BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Reference for composition-based statistics starting in round 2: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= gi|254781170|ref|YP_003065583.1| deoxyribodipyrimidine photolyase [Candidatus Liberibacter asiaticus str. psy62] (483 letters) Database: nr 14,124,377 sequences; 4,842,793,630 total letters Searching..................................................done Results from round 1 >gi|254781170|ref|YP_003065583.1| deoxyribodipyrimidine photolyase [Candidatus Liberibacter asiaticus str. psy62] gi|254040847|gb|ACT57643.1| deoxyribodipyrimidine photolyase [Candidatus Liberibacter asiaticus str. psy62] Length = 483 Score = 1010 bits (2611), Expect = 0.0, Method: Compositional matrix adjust. Identities = 483/483 (100%), Positives = 483/483 (100%) Query: 1 MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHF 60 MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHF Sbjct: 1 MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHF 60 Query: 61 IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120 IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD Sbjct: 61 IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120 Query: 121 KLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVP 180 KLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVP Sbjct: 121 KLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVP 180 Query: 181 AIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ 240 AIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ Sbjct: 181 AIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ 240 Query: 241 GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPS 300 GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPS Sbjct: 241 GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPS 300 Query: 301 VCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASF 360 VCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASF Sbjct: 301 VCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASF 360 Query: 361 LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDP 420 LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDP Sbjct: 361 LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDP 420 Query: 421 QGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQ 480 QGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQ Sbjct: 421 QGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQ 480 Query: 481 SLL 483 SLL Sbjct: 481 SLL 483 >gi|315122561|ref|YP_004063050.1| deoxyribodipyrimidine photolyase [Candidatus Liberibacter solanacearum CLso-ZC1] gi|313495963|gb|ADR52562.1| deoxyribodipyrimidine photolyase [Candidatus Liberibacter solanacearum CLso-ZC1] Length = 477 Score = 786 bits (2029), Expect = 0.0, Method: Compositional matrix adjust. Identities = 363/476 (76%), Positives = 414/476 (86%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 MSVHLVWLRNDLRITDNKALYAAC N +AKVIAVFIATP+QW QHG+SARQ+ FIYA+LL Sbjct: 1 MSVHLVWLRNDLRITDNKALYAACKNPNAKVIAVFIATPQQWNQHGMSARQATFIYATLL 60 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 QVQ+SLS++GIV QYHQCS+FDD+I+WLD YC +++VT+LFYNRQYEINE RRD+ LE+R Sbjct: 61 QVQQSLSKRGIVLQYHQCSHFDDAIKWLDVYCQEKKVTELFYNRQYEINEHRRDQELERR 120 Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 L++RVIC+ FDDSVLLPPG I N A +MYK+YTPFRK IQNL Q+DLRS+P P IR TG Sbjct: 121 LKNRVICRGFDDSVLLPPGKIFNRACEMYKIYTPFRKEFIQNLTQSDLRSVPAPTIRQTG 180 Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246 PV + +P +FDYPFQ +DP+FPIGE NAL ILRKFCKEKV YYVEQRDIPAIQGTS LS Sbjct: 181 PVILTKVPLYFDYPFQEVDPIFPIGEYNALQILRKFCKEKVQYYVEQRDIPAIQGTSHLS 240 Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP 306 PYLSIG LSPRQCWNRL EF D+LIK SGAFSWLNELIWREFY HL+ FYPS+C GKP Sbjct: 241 PYLSIGALSPRQCWNRLNVEFSDVLIKTNSGAFSWLNELIWREFYHHLIVFYPSLCTGKP 300 Query: 307 FIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLL 366 FI WT+KIEWN D L+ WKQG TGFP++DAAMRQLNT+GWMHNRLRMITASFLVKDLL Sbjct: 301 FIQWTDKIEWNNDPRALEVWKQGNTGFPLVDAAMRQLNTMGWMHNRLRMITASFLVKDLL 360 Query: 367 VDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIR 426 +DWRIGE+YFMSQLLDG+LASNNGGWQWAASTG+DSVPYFRIFNPT QGKRFDP+G FIR Sbjct: 361 IDWRIGEKYFMSQLLDGNLASNNGGWQWAASTGHDSVPYFRIFNPTTQGKRFDPKGIFIR 420 Query: 427 HWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQSL 482 WLPEL NVP QYIH PH+W+D + YP PIVDHK+A HT+++Y A+KQS+ Sbjct: 421 QWLPELKNVPDQYIHTPHNWIDNKNTIHPYPHPIVDHKQARQHTISKYSIAQKQSI 476 >gi|157369495|ref|YP_001477484.1| deoxyribodipyrimidine photolyase [Serratia proteamaculans 568] gi|157321259|gb|ABV40356.1| Deoxyribodipyrimidine photo-lyase [Serratia proteamaculans 568] Length = 476 Score = 665 bits (1715), Expect = 0.0, Method: Compositional matrix adjust. Identities = 305/473 (64%), Positives = 374/473 (79%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M+ HLVWLRNDLRITDNKAL+AAC + DA+V+AVFIATP+QWRQH ++ RQ FI+A+LL Sbjct: 1 MTTHLVWLRNDLRITDNKALHAACSDPDARVLAVFIATPQQWRQHEMAPRQVAFIHANLL 60 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 QVQ++L+++GI YHQC +F +++WL +YC QQ+V +LFYNRQYEINE +RD+ LE+R Sbjct: 61 QVQQALAERGIPLGYHQCDDFAAAVDWLTAYCAQQQVDRLFYNRQYEINERQRDQRLEQR 120 Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 L + IC+SFDDS+LLPPGS+ + +MYK+YTPFRKA IQ L ++D++SLP P R G Sbjct: 121 LSGQAICQSFDDSLLLPPGSVQTGSGEMYKIYTPFRKAFIQRLTESDIQSLPAPKPRAGG 180 Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246 + + IP FDYP + FP GE+ AL LR FC+E+V Y+EQRD+PAI GTS LS Sbjct: 181 ALPVTAIPEAFDYPPAEPNEDFPAGEEAALQRLRSFCREQVQDYLEQRDLPAIAGTSSLS 240 Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP 306 PYL+IGVLSPRQC+NRL+ E LL SGAF WLNELIWREFYRHLM YP++C +P Sbjct: 241 PYLAIGVLSPRQCFNRLRAECPQLLENHDSGAFGWLNELIWREFYRHLMVAYPALCKHRP 300 Query: 307 FIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLL 366 FI WT+++ W + LLQAW+QG TG+PI+DAAMRQLNT GWMHNRLRMI+ASFLVKDLL Sbjct: 301 FIEWTDRVRWQDNQELLQAWQQGVTGYPIVDAAMRQLNTTGWMHNRLRMISASFLVKDLL 360 Query: 367 VDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIR 426 +DWR GE YFMSQLLDGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG+RFDPQGTFIR Sbjct: 361 IDWRAGESYFMSQLLDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGERFDPQGTFIR 420 Query: 427 HWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479 WL EL +VP IH PH W ++ L+YPLPIVDHK+A TL + AAK+ Sbjct: 421 KWLSELADVPDNAIHQPHRWAEQQQRVLDYPLPIVDHKQARLETLAAFEAAKR 473 >gi|270263757|ref|ZP_06192026.1| deoxyribodipyrimidine photolyase [Serratia odorifera 4Rx13] gi|270042641|gb|EFA15736.1| deoxyribodipyrimidine photolyase [Serratia odorifera 4Rx13] Length = 476 Score = 649 bits (1674), Expect = 0.0, Method: Compositional matrix adjust. Identities = 299/473 (63%), Positives = 366/473 (77%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M+ HLVWLRNDLRITDNKAL+AAC + A+V+AVFIATP QWRQH ++ RQ+ FI+A+LL Sbjct: 1 MATHLVWLRNDLRITDNKALHAACCDPAARVLAVFIATPGQWRQHEMAPRQAAFIHANLL 60 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 QVQ++L+ +GI HQC +F +++WL +YC Q+RV LFYNRQYEINE++RD+ ++R Sbjct: 61 QVQQALADRGIPLVCHQCDDFSAAVDWLVAYCAQERVNALFYNRQYEINELKRDQQAQRR 120 Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 L +VIC+SFDDS+LLPPGS+ +MYK+YTPFRKA IQ L ++D+RSLP P R G Sbjct: 121 LSGQVICQSFDDSLLLPPGSVQTGGGEMYKIYTPFRKAFIQRLTESDVRSLPAPKRREGG 180 Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246 + S P FDYP FP GE AL LR FC+E+V Y++QRD PAI GTS LS Sbjct: 181 ALPVSVAPAAFDYPQVEAGADFPAGEDAALKRLRAFCREQVQDYLQQRDFPAIAGTSSLS 240 Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP 306 PYL+IGVLSPRQC+NRL+ E +L SGAF WLNELIWREFYRHLM YP++C +P Sbjct: 241 PYLAIGVLSPRQCFNRLRAECPQVLENSDSGAFGWLNELIWREFYRHLMVAYPALCRHRP 300 Query: 307 FIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLL 366 FI WT+++ W + LL AW++G TG+PI+DAAMRQLN GWMHNRLRMI+ASFLVKDLL Sbjct: 301 FIEWTDRVRWRNNDALLLAWQKGATGYPIVDAAMRQLNKTGWMHNRLRMISASFLVKDLL 360 Query: 367 VDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIR 426 +DWR GE YFMSQLLDGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG+RFDPQGTFIR Sbjct: 361 IDWRAGERYFMSQLLDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGERFDPQGTFIR 420 Query: 427 HWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479 WLPEL +VP +H PH W +K +L+YPLPIVDHK+A TL + AAK+ Sbjct: 421 KWLPELADVPDNALHQPHLWAEKQQRTLDYPLPIVDHKQARLETLAAFEAAKR 473 >gi|320539319|ref|ZP_08038988.1| putative deoxyribodipyrimidine photolyase, FAD-binding [Serratia symbiotica str. Tucson] gi|320030444|gb|EFW12454.1| putative deoxyribodipyrimidine photolyase, FAD-binding [Serratia symbiotica str. Tucson] Length = 475 Score = 639 bits (1647), Expect = 0.0, Method: Compositional matrix adjust. Identities = 301/473 (63%), Positives = 365/473 (77%), Gaps = 1/473 (0%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M+ HLVWLRNDLRITDNKAL+AAC+ DA+V+AVFIATP+QWR+H I+ RQ+ I+ASL Sbjct: 1 MTTHLVWLRNDLRITDNKALHAACNEPDARVLAVFIATPQQWRRHDIAPRQAALIHASLK 60 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 Q+Q++L QKGI HQC +F SI+WL YC +Q+VT LFYNRQYE+NE RRD+ +E+R Sbjct: 61 QLQQALEQKGIPLYCHQCDDFAASIDWLTDYCAKQQVTVLFYNRQYELNEWRRDQQVEQR 120 Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 L RV C+ FDDS+LLPPGS+ + +MYKVYTPFR A I+ L ++D+R LP P R G Sbjct: 121 LAGRVRCQHFDDSLLLPPGSVQTGSGEMYKVYTPFRNAFIRRLTESDVRCLPAPQPR-AG 179 Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246 + + P F+Y FP GEQ AL LR FC+++V Y+ QRD+PAI GTS LS Sbjct: 180 ALPIPDAPPAFEYSHADPGEDFPAGEQAALQRLRAFCRQQVQDYLTQRDLPAIAGTSSLS 239 Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP 306 PYL+IG LSPRQC+NRL E +L + +SGAF WLNELIWREFYRHLMA YP++C +P Sbjct: 240 PYLAIGTLSPRQCFNRLCAEHPSVLEERESGAFGWLNELIWREFYRHLMAAYPALCRHRP 299 Query: 307 FIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLL 366 FI WT+K+ W D LLQAW++G TG+PI+DAAMRQLN GWMHNRLRMI+ASFLVKDLL Sbjct: 300 FIAWTDKVRWRNDESLLQAWQRGKTGYPIVDAAMRQLNNTGWMHNRLRMISASFLVKDLL 359 Query: 367 VDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIR 426 +DWR+GE YFMSQLLDGDLA+NNGGWQWAASTG D+VPYFRIFNPT Q +RFDPQGTFIR Sbjct: 360 IDWRVGERYFMSQLLDGDLAANNGGWQWAASTGTDAVPYFRIFNPTSQSERFDPQGTFIR 419 Query: 427 HWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479 WLPEL +VP IH PH W K L LNYPLP+VDH++A TL + AAK+ Sbjct: 420 KWLPELADVPDNDIHQPHLWAQKQQLVLNYPLPVVDHRQARLETLAAFEAAKQ 472 >gi|293397249|ref|ZP_06641522.1| deoxyribodipyrimidine photolyase [Serratia odorifera DSM 4582] gi|291420269|gb|EFE93525.1| deoxyribodipyrimidine photolyase [Serratia odorifera DSM 4582] Length = 476 Score = 623 bits (1607), Expect = e-176, Method: Compositional matrix adjust. Identities = 287/473 (60%), Positives = 355/473 (75%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M+ HLVWLRNDLR+TDN+ALYAAC + A V+AVFIATP+QWRQH ++ARQ+ FI+A+L Sbjct: 1 MTTHLVWLRNDLRVTDNQALYAACRDPQATVMAVFIATPQQWRQHHMAARQAAFIHATLR 60 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 Q+Q++L+Q+GI QC +F +++WL +C V LFYNRQYE+NE RRD+ LE+R Sbjct: 61 QLQQALAQRGIPLVTQQCDDFAAAVDWLADFCQASHVDALFYNRQYELNERRRDRQLEQR 120 Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 L V C++FDDS+LLPPGS+L+ +MYK+YTPFR+A + L ++D+ SLP PA R G Sbjct: 121 LNGMVNCQAFDDSLLLPPGSVLSGNGEMYKMYTPFRRAFLARLAESDIASLPAPAQRSCG 180 Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246 P FDYP +D FP GE+ AL LR FC+++V Y QRDIPA+ GTS LS Sbjct: 181 QWQAITPPAPFDYPAAELDDGFPAGEEAALRRLRHFCRQQVQDYHHQRDIPAVDGTSVLS 240 Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP 306 PYL++G LSPRQC NRL+ E D+L P GAF WLNELIWREFYRHL+ P++C +P Sbjct: 241 PYLAVGALSPRQCVNRLRAECPDMLANPHGGAFCWLNELIWREFYRHLLVANPALCRHRP 300 Query: 307 FIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLL 366 FI WT+++ WN + AW+QG TG+PI+DAAMRQLN GWMHNRLRMI ASFLVKDLL Sbjct: 301 FIAWTDRVRWNPAADNFLAWQQGRTGYPIVDAAMRQLNQTGWMHNRLRMIAASFLVKDLL 360 Query: 367 VDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIR 426 +DWR GE YFMSQLLDGDLA+NNGGWQWAASTG D+ PYFRIFNPT QGKRFDPQG+FIR Sbjct: 361 IDWRAGERYFMSQLLDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGKRFDPQGSFIR 420 Query: 427 HWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479 WLPEL +VP +H PH W +K L+YPLPIVDH +A TL + AAK+ Sbjct: 421 KWLPELADVPDNELHQPHRWAEKQQRVLDYPLPIVDHPQARLATLAAFDAAKR 473 >gi|322833858|ref|YP_004213885.1| Deoxyribodipyrimidine photo-lyase [Rahnella sp. Y9602] gi|321169059|gb|ADW74758.1| Deoxyribodipyrimidine photo-lyase [Rahnella sp. Y9602] Length = 476 Score = 606 bits (1563), Expect = e-171, Method: Compositional matrix adjust. Identities = 276/475 (58%), Positives = 347/475 (73%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M+ HLVW RNDLRITDN+AL+AAC + A+VIAVF+ATPEQW+QH ++ RQ+ FIY L Sbjct: 1 MTTHLVWFRNDLRITDNRALHAACEDPQARVIAVFVATPEQWKQHEMAPRQAMFIYQHLQ 60 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 +Q +L+++GI YHQC +F DS+ WL +C ++V LFYN+QYE NE +RD LE Sbjct: 61 ALQHALAERGIGLHYHQCDDFADSVTWLKDFCKTEKVDALFYNKQYEFNERQRDAALENA 120 Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 + VIC +FDDS+LLPPGS++ +MYKVYTPFR+A + L ++D RSLP P R Sbjct: 121 VSESVICHAFDDSLLLPPGSVMTGNNEMYKVYTPFRRAFLSRLTESDSRSLPAPQTRGNA 180 Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246 ++ FDYP I F IGE+ A + LR FC+E+V Y+EQRD+PA+ GTS LS Sbjct: 181 EKVVTHRLMPFDYPLADIGDHFAIGEEAARNRLRSFCREQVQDYLEQRDLPAVDGTSSLS 240 Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP 306 PYL+IGVLSPRQC NRL+ E D+L K GAF WLNEL+WREFYRHL+ +P +C +P Sbjct: 241 PYLAIGVLSPRQCLNRLRAECPDVLEKTDGGAFGWLNELVWREFYRHLIVAWPKLCKHQP 300 Query: 307 FIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLL 366 F+ WT+ + W LQAWK G TG+PI+DAAMRQLN GWMHNRLRMI ASFLVKDLL Sbjct: 301 FVAWTDNVRWRHAPDDLQAWKDGKTGYPIVDAAMRQLNATGWMHNRLRMIVASFLVKDLL 360 Query: 367 VDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIR 426 ++WR GE YFMSQLLDGDLA+NNGGWQW ASTG D+ PYFRIFNPT QG+RFD G FI+ Sbjct: 361 INWREGERYFMSQLLDGDLAANNGGWQWGASTGTDAAPYFRIFNPTTQGERFDKTGCFIK 420 Query: 427 HWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481 W+PEL +VP + IH PH W +K+ L+YPLP++DH +A TL + AAK +S Sbjct: 421 AWVPELADVPERDIHQPHRWAEKHHRVLDYPLPVIDHAQARKDTLAAFEAAKNRS 475 >gi|238797755|ref|ZP_04641249.1| Deoxyribodipyrimidine photo-lyase [Yersinia mollaretii ATCC 43969] gi|238718396|gb|EEQ10218.1| Deoxyribodipyrimidine photo-lyase [Yersinia mollaretii ATCC 43969] Length = 481 Score = 596 bits (1537), Expect = e-168, Method: Compositional matrix adjust. Identities = 282/475 (59%), Positives = 349/475 (73%), Gaps = 2/475 (0%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M+ HLVW R+DLRITDN AL+AAC + AKV+AVFIATP+QW H ++ RQ+ F+ +L Sbjct: 1 MATHLVWFRHDLRITDNLALHAACQDEQAKVMAVFIATPKQWAAHDMAPRQAAFLRQNLH 60 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 +Q +L+ +GI YHQC++F DSI WL +C QQ+V LFYN+QYE+NE+RRD+ + Sbjct: 61 LLQAALADRGIPLHYHQCADFQDSILWLADFCQQQQVDALFYNQQYELNEMRRDEAFTVQ 120 Query: 127 LQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185 L R I C SF DSVLLPPGS+ +MYK++TPFR+A IQ L+ +D RS+P P R Sbjct: 121 LNRRSIACHSFHDSVLLPPGSVQTGNNEMYKIFTPFRRAFIQRLMMSDCRSVPAPKARQN 180 Query: 186 GPVTPSNIPRFFDYPFQAIDP-MFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244 FDYP Q++D +FP GE+ AL LR FC+E+V Y++QRD+PA+ GTS Sbjct: 181 AGAITLTPLEPFDYPQQSVDSQLFPAGEEAALQRLRSFCREQVQDYLQQRDLPAVAGTSG 240 Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304 LSPYL++G+LSPRQC+NRL+ E DLL SGAF+WLNELIWREFYRHL+ YP +C Sbjct: 241 LSPYLALGILSPRQCFNRLRAECPDLLESSDSGAFTWLNELIWREFYRHLLVAYPRLCQH 300 Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364 PF+ WT+ + WN L AW+QG TG+PI+DAAMRQLN GWMHNRLRMITASFLVKD Sbjct: 301 HPFMGWTDAVRWNHSEPQLIAWQQGLTGYPIVDAAMRQLNETGWMHNRLRMITASFLVKD 360 Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424 LL+DWR+GE YFMSQLLDGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG+RFD +GTF Sbjct: 361 LLIDWRLGERYFMSQLLDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGERFDKEGTF 420 Query: 425 IRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479 IR WLPEL VP + IH P W + LNYP P+VDHK A TL + AAK+ Sbjct: 421 IRRWLPELAAVPDRDIHQPWRWAQQQQQHLNYPPPLVDHKLARLATLAAFDAAKR 475 >gi|253687618|ref|YP_003016808.1| Deoxyribodipyrimidine photo-lyase [Pectobacterium carotovorum subsp. carotovorum PC1] gi|251754196|gb|ACT12272.1| Deoxyribodipyrimidine photo-lyase [Pectobacterium carotovorum subsp. carotovorum PC1] Length = 497 Score = 594 bits (1532), Expect = e-168, Method: Compositional matrix adjust. Identities = 278/477 (58%), Positives = 353/477 (74%), Gaps = 2/477 (0%) Query: 3 ATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIY 62 AT + HLVWLRNDLRITDN AL AAC + +A V+AVFIATP QW +H ++ RQ+ F+ Sbjct: 6 ATHHAATHLVWLRNDLRITDNLALSAACQDPNATVLAVFIATPAQWEKHDMAPRQAAFLL 65 Query: 63 ASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKL 122 +L VQ +L++KGI YH+C++F S++WL +C QQ+ T LFYN QYEINE RDK Sbjct: 66 ENLTSVQHALAEKGIPLHYHECADFAASVDWLVQFCAQQQATDLFYNYQYEINERLRDKQ 125 Query: 123 LEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAI 182 ++ RL V+C + DS+LLPPGS+L +MYKV+TPFR+A I+ L++A+ +P P Sbjct: 126 VKDRLADSVVCHGYHDSLLLPPGSVLTGNGEMYKVFTPFRQAFIKRLLEAETTCVPAPDA 185 Query: 183 RLTGPVTPSNIPRFFDYPFQAIDPM-FPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQG 241 R P+ F YP + +D FP GE+ AL LR+FC+E+V Y QRD+PA+ G Sbjct: 186 R-GEPIHNMMALAPFSYPQREVDSDDFPCGERAALQQLRRFCREQVQDYDRQRDVPALPG 244 Query: 242 TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSV 301 TS+LSPYL++G++SPRQC+NRL+ E D+L + + GAF+W NEL+WREFYRHL+ +P + Sbjct: 245 TSKLSPYLALGIVSPRQCFNRLRAECPDMLERREGGAFTWFNELVWREFYRHLIVSWPQL 304 Query: 302 CMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFL 361 C +PF WT+ ++W + S L AW+QG TG+PI+DAAMRQLN GWMHNRLRMI ASFL Sbjct: 305 CKHRPFTAWTQWVKWRESSEDLTAWQQGKTGYPIVDAAMRQLNGTGWMHNRLRMICASFL 364 Query: 362 VKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQ 421 VKDLL+DWR GE YFMSQLLDGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG+RFDP+ Sbjct: 365 VKDLLIDWREGERYFMSQLLDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGERFDPE 424 Query: 422 GTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478 G FIRHWLPEL VP + IH PH W DK+ LNYPLPIVDHK A +TL + AAK Sbjct: 425 GRFIRHWLPELAAVPDKDIHQPHRWADKHHHQLNYPLPIVDHKTARQNTLAAFEAAK 481 >gi|238756042|ref|ZP_04617366.1| Deoxyribodipyrimidine photo-lyase [Yersinia ruckeri ATCC 29473] gi|238705767|gb|EEP98160.1| Deoxyribodipyrimidine photo-lyase [Yersinia ruckeri ATCC 29473] Length = 479 Score = 594 bits (1532), Expect = e-167, Method: Compositional matrix adjust. Identities = 281/474 (59%), Positives = 352/474 (74%), Gaps = 2/474 (0%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M+ HL+W R+DLR+TDN AL+AAC + A+VIAVFIATP+QW H +S +Q+ FI +L Sbjct: 1 MATHLIWFRHDLRVTDNLALHAACQDPQAQVIAVFIATPQQWAAHNMSPKQATFIQQNLQ 60 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 +Q++L+ + I YHQC +FD S WL ++ +++V KLFYN QYE+NE RRD LE Sbjct: 61 CLQQALALRSIPLYYHQCHDFDASRRWLAAFSREKQVDKLFYNHQYELNERRRDAELEDS 120 Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 L+ +V C+ + DS+LL PGS+L MYK+YTPFR+A IQ L+ +D + +P P R Sbjct: 121 LRGQVACQGYHDSLLLAPGSVLTGNGDMYKIYTPFRRAFIQRLLISDCQCVPAPRAR-GE 179 Query: 187 PVTPSNIPRFFDYPFQAIDP-MFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245 P+T FDYP + +D +FP GE+ AL LR+FC+E V Y +QRD+PAI GTSQL Sbjct: 180 PITTIQPLAPFDYPTENVDSVLFPAGEEAALQRLRQFCREPVRDYHQQRDLPAIAGTSQL 239 Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305 SPYL+IG LSPRQC+NRL+ E D+L +P SGAFSWLNELIWREFYRHL+ YP +C + Sbjct: 240 SPYLAIGQLSPRQCFNRLRVECPDMLEQPDSGAFSWLNELIWREFYRHLLVAYPRLCQHR 299 Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365 PFI WT+++ WN D+ LQAW+QG TG+PI+DAAMRQ+N GWMHNRLRMITASFLVKDL Sbjct: 300 PFIGWTDEVRWNTDAERLQAWQQGMTGYPIVDAAMRQMNATGWMHNRLRMITASFLVKDL 359 Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425 LVDWR GE YFMS+LLDGDLA+NNGGWQWAASTG DS PYFRIFNPT QG+RFD G FI Sbjct: 360 LVDWRQGERYFMSKLLDGDLAANNGGWQWAASTGTDSAPYFRIFNPTTQGERFDKHGVFI 419 Query: 426 RHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479 RHWLPEL VP IH P W + L+YPLP+VDHK+A TL + AA++ Sbjct: 420 RHWLPELAAVPASDIHQPWRWAQRQQQHLDYPLPMVDHKQARLDTLAAFEAARR 473 >gi|238786314|ref|ZP_04630253.1| Deoxyribodipyrimidine photo-lyase [Yersinia bercovieri ATCC 43970] gi|238712773|gb|EEQ04846.1| Deoxyribodipyrimidine photo-lyase [Yersinia bercovieri ATCC 43970] Length = 481 Score = 594 bits (1531), Expect = e-167, Method: Compositional matrix adjust. Identities = 282/475 (59%), Positives = 346/475 (72%), Gaps = 2/475 (0%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M+ HLVWLRNDLR+TDN ALYAAC + A+VIAVFIATP+QW H ++ RQ+ F+ +L Sbjct: 1 MATHLVWLRNDLRVTDNLALYAACQDEHARVIAVFIATPKQWAAHDMAPRQAAFLRQNLQ 60 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 +Q +L+ +GI YHQC +F DSI WLD++C QQ+V LFYN+QYE+NE RRD+ + Sbjct: 61 LLQGALASRGIPLHYHQCDDFQDSIVWLDNFCQQQQVDALFYNQQYELNERRRDEAFTAQ 120 Query: 127 LQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185 L + I C SF DSVLLPPGS+ +MYK++TPFR+A IQ L+ +D R +P P R Sbjct: 121 LNRQSIACHSFHDSVLLPPGSVQTGNHEMYKIFTPFRRAFIQRLMMSDCRCVPAPQARQN 180 Query: 186 GPVTPSNIPRFFDYPFQAID-PMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244 + FDYP + D +FP GE+ AL LR FC+E+V Y++QRD PAI GTS Sbjct: 181 SGAVELSPLEPFDYPQHSADNSLFPAGEEAALQRLRSFCREQVQDYLQQRDRPAIAGTSC 240 Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304 LSPYL++G++SPRQC+NRL+ E DLL + SGAF+WLNELIWREFYRHL+ YP +C Sbjct: 241 LSPYLALGIVSPRQCFNRLRAECPDLLERSDSGAFTWLNELIWREFYRHLLVAYPRLCQH 300 Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364 PFI WT+ + WN L AW+QG TG+PI+DAAMRQLN GWMHNRLRMI+ASFLVKD Sbjct: 301 HPFIGWTDAVRWNHSEQQLIAWQQGQTGYPIVDAAMRQLNETGWMHNRLRMISASFLVKD 360 Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424 LL+DWR GE YFMSQLLDGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG+RFD +GTF Sbjct: 361 LLIDWRHGERYFMSQLLDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGERFDKEGTF 420 Query: 425 IRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479 IR WLPEL VP IH P W + LNYP P+VDHK A TL + AAK+ Sbjct: 421 IRRWLPELAAVPDSDIHQPWRWAQRQQQHLNYPPPLVDHKLARLATLAAFDAAKR 475 >gi|227114750|ref|ZP_03828406.1| deoxyribodipyrimidine photolyase [Pectobacterium carotovorum subsp. brasiliensis PBR1692] Length = 492 Score = 589 bits (1518), Expect = e-166, Method: Compositional matrix adjust. Identities = 275/476 (57%), Positives = 352/476 (73%), Gaps = 2/476 (0%) Query: 4 TTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYA 63 TT H+VWLRNDLR+TDN ALYAAC + +A V+AVFIATP QW +H ++ RQ+ F+ Sbjct: 2 TTHAVTHVVWLRNDLRVTDNLALYAACQDPNATVLAVFIATPVQWEKHDMAPRQAAFLLE 61 Query: 64 SLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLL 123 +L VQ++L++KGI YH+C++F S++WL +C QQ+ T LFYN QYEINE RDK + Sbjct: 62 NLRLVQQALAEKGIPLHYHECADFAASVDWLVQFCAQQQATDLFYNYQYEINERLRDKQV 121 Query: 124 EKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIR 183 + RL V+C + DS+LLPPGS+L +MYKV+TPFR+A I+ L+++D +P P R Sbjct: 122 KDRLADSVVCHGYHDSLLLPPGSVLTGNGEMYKVFTPFRQAFIKRLLESDTTCVPAPDAR 181 Query: 184 LTGPVTPSNIPRFFDYPFQAID-PMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGT 242 P+ F YP + +D FP GE+ AL LR+FC+E+V Y +QRD PA+ GT Sbjct: 182 -GEPINNMVELAPFSYPQREVDGDDFPSGERAALQQLRRFCREQVQDYDQQRDFPALPGT 240 Query: 243 SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVC 302 S+LSPYL++G++SPRQC+NRL+ E ++L + + GAF+W NEL+WREFYRHL+ +P +C Sbjct: 241 SKLSPYLALGIVSPRQCFNRLRAECPEMLERREGGAFTWFNELVWREFYRHLIVSWPQLC 300 Query: 303 MGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLV 362 +PF WT+ ++W + L AW+QG TG+PI+DAAMRQLN GWMHNRLRMI ASFLV Sbjct: 301 KHRPFTAWTQWVKWRESREDLAAWQQGKTGYPIVDAAMRQLNETGWMHNRLRMICASFLV 360 Query: 363 KDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQG 422 KDLL+DWR GE YFMSQLLDGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG+RFDP+G Sbjct: 361 KDLLIDWREGERYFMSQLLDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGERFDPEG 420 Query: 423 TFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478 FIRHWLPEL VP + IH PH W DK+ LNYPLPIVDHK A TL + AAK Sbjct: 421 RFIRHWLPELAAVPDKDIHQPHRWADKHHHQLNYPLPIVDHKTARQDTLAAFEAAK 476 >gi|227327531|ref|ZP_03831555.1| deoxyribodipyrimidine photolyase [Pectobacterium carotovorum subsp. carotovorum WPP14] Length = 492 Score = 588 bits (1517), Expect = e-166, Method: Compositional matrix adjust. Identities = 275/476 (57%), Positives = 353/476 (74%), Gaps = 2/476 (0%) Query: 4 TTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYA 63 TT + H+VWLRNDLR+TDN ALYAAC + +A V+AVFIATP QW +H ++ RQ+ F+ Sbjct: 2 TTHVVTHVVWLRNDLRVTDNLALYAACQDPNASVLAVFIATPAQWEKHDMAPRQAAFLLE 61 Query: 64 SLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLL 123 +L VQ +L++KGI YH+C++F S++WL +C QQ+ T LFYN QYEINE RDK + Sbjct: 62 NLTLVQHALAEKGIPLHYHECADFAASVDWLVQFCAQQQATDLFYNYQYEINERLRDKQV 121 Query: 124 EKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIR 183 + RL V+ + DS+LLPPGS+L +MYKV+TPFR+A I+ L+++D +P P R Sbjct: 122 KDRLADSVVFHGYHDSLLLPPGSVLTGNGEMYKVFTPFRQAFIKRLLESDTTCVPAPDAR 181 Query: 184 LTGPVTPSNIPRFFDYPFQAIDPM-FPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGT 242 P+ + F YP + +D FP GE+ AL LR+FC+E+V Y +QRD PA+ GT Sbjct: 182 -GEPIDNTVELAPFSYPQREVDSEDFPRGERAALQQLRRFCREQVQDYDQQRDFPALPGT 240 Query: 243 SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVC 302 S+LSPYL++G++SPRQC+NRL+ E D+L + + GAF+W NEL+WREFYRHL+ +P +C Sbjct: 241 SKLSPYLALGIVSPRQCFNRLRAECPDMLERREGGAFTWFNELVWREFYRHLIVSWPQLC 300 Query: 303 MGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLV 362 +PF WT+ ++W + L AW+QG TG+PI+DAAMRQLN GWMHNRLRMI ASFLV Sbjct: 301 KHRPFTAWTQWVKWRESPKDLAAWQQGRTGYPIVDAAMRQLNETGWMHNRLRMICASFLV 360 Query: 363 KDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQG 422 KDLL+DWR GE YFMSQLLDGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG+RFDP+G Sbjct: 361 KDLLIDWREGERYFMSQLLDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGERFDPEG 420 Query: 423 TFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478 FIRHWLPEL VP + IH PH W DK+ LNYPLPIVDHK A +TL + AAK Sbjct: 421 RFIRHWLPELAAVPDKDIHQPHRWADKHHHQLNYPLPIVDHKTARQNTLAAFEAAK 476 >gi|238762829|ref|ZP_04623797.1| Deoxyribodipyrimidine photo-lyase [Yersinia kristensenii ATCC 33638] gi|238698840|gb|EEP91589.1| Deoxyribodipyrimidine photo-lyase [Yersinia kristensenii ATCC 33638] Length = 481 Score = 587 bits (1514), Expect = e-165, Method: Compositional matrix adjust. Identities = 283/475 (59%), Positives = 343/475 (72%), Gaps = 2/475 (0%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M+ HLVW RNDLR+TDN AL+AAC + A V+AVFIATP QW H ++ RQ+ F+ +L Sbjct: 1 MATHLVWFRNDLRLTDNLALHAACQDPQAIVMAVFIATPAQWAAHDMAPRQAAFLLQNLQ 60 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 +Q +L+++GI YHQC +F DSI WL+ +C QQ V LFYN+QYE+NE RD+ L + Sbjct: 61 LLQSALAERGIPLHYHQCDDFKDSITWLNDFCQQQPVDALFYNQQYELNERVRDEALMAQ 120 Query: 127 LQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185 L R I C F DSVLLPPG++L +MYKV+TPFR+A IQ L+ +D RS+P P R T Sbjct: 121 LSQRAIACHGFHDSVLLPPGTVLTGNNEMYKVFTPFRRAFIQRLMMSDCRSVPAPKARTT 180 Query: 186 GPVTPSNIPRFFDYPFQAID-PMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244 VTPS FDYP Q +D +FP GE+ AL LR+FC+E Y +QRD PAI GTS Sbjct: 181 AAVTPSQPLAPFDYPQQPVDNQLFPAGEEAALQRLRRFCREDAQDYQQQRDFPAIAGTSC 240 Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304 LSPYL++G+LSPRQC NRL+ E DLL + GAF WLNELIWREFYRHL+ YP +C Sbjct: 241 LSPYLALGILSPRQCVNRLRAECPDLLENVEGGAFIWLNELIWREFYRHLLVAYPRLCQH 300 Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364 PFI WT+ + WN L AW+QG TG+PI+DAAMRQLN GWMHNRLRMI+ASFLVKD Sbjct: 301 HPFISWTDAVIWNHSEQQLIAWQQGRTGYPIVDAAMRQLNETGWMHNRLRMISASFLVKD 360 Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424 LL+DWR GE YFMSQLLDGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG+RFD G F Sbjct: 361 LLIDWRHGERYFMSQLLDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGERFDKDGVF 420 Query: 425 IRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479 IR WLPEL VP IH P W ++ L+YP P+VDHK+A TL + AAK+ Sbjct: 421 IRRWLPELAAVPDSDIHQPWRWAERQQQPLDYPPPLVDHKQARLATLAAFEAAKR 475 >gi|261822355|ref|YP_003260461.1| deoxyribodipyrimidine photolyase [Pectobacterium wasabiae WPP163] gi|261606368|gb|ACX88854.1| Deoxyribodipyrimidine photo-lyase [Pectobacterium wasabiae WPP163] Length = 492 Score = 587 bits (1513), Expect = e-165, Method: Compositional matrix adjust. Identities = 274/476 (57%), Positives = 351/476 (73%), Gaps = 2/476 (0%) Query: 4 TTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYA 63 TT + H+VWLRNDLR+TDN AL+AAC N +A V+AVFIATP QW+QH ++ Q+ F+ Sbjct: 2 TTPVVTHVVWLRNDLRVTDNLALHAACQNPNATVLAVFIATPAQWKQHDMAPHQATFLLD 61 Query: 64 SLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLL 123 +L VQ++L++KGI YH+C++F S++WL +C QQ+ T LFYN QYEINE RDK + Sbjct: 62 NLTLVQQALAEKGIPLHYHECADFAASVDWLVQFCAQQQATDLFYNHQYEINERLRDKQV 121 Query: 124 EKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIR 183 + RL V+C + DS+LLPPGS+L +MYKV+TPFR+A I+ L++AD +P P +R Sbjct: 122 KDRLTDSVVCHGYHDSLLLPPGSVLTGNGEMYKVFTPFRQAFIKRLLEADTMCVPAPDVR 181 Query: 184 LTGPVTPSNIPRFFDYP-FQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGT 242 P+ + F YP + + FP GE+ AL LR+FC+E+V Y +QRD PA GT Sbjct: 182 -GEPINNTVAFVPFSYPRVEVNNDDFPCGERAALQQLRRFCREQVQDYDQQRDFPAQPGT 240 Query: 243 SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVC 302 S+LSPYL++G++SPRQC+NRL+ E ++L + + GAF+W NEL+WREFYRHL+ +P +C Sbjct: 241 SKLSPYLALGIVSPRQCFNRLRTECPEMLERREGGAFTWFNELVWREFYRHLIVSWPLLC 300 Query: 303 MGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLV 362 +PF WT+ ++W + L AW+QG TG+PI+DAAMRQLN GWMHNRLRMI ASFLV Sbjct: 301 KHRPFTAWTQWVKWRESPEDLAAWQQGKTGYPIVDAAMRQLNETGWMHNRLRMICASFLV 360 Query: 363 KDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQG 422 KDLL+DWR GE YFMSQLLDGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG+RFDP+G Sbjct: 361 KDLLIDWREGERYFMSQLLDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGERFDPEG 420 Query: 423 TFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478 FIRHWLPEL VP + IH PH W DK LNYP PIVDHK A TL + AAK Sbjct: 421 RFIRHWLPELAIVPDKDIHQPHRWADKQHFKLNYPQPIVDHKTARQDTLAAFEAAK 476 >gi|50120288|ref|YP_049455.1| deoxyribodipyrimidine photolyase [Pectobacterium atrosepticum SCRI1043] gi|49610814|emb|CAG74259.1| deoxyribodipyrimidine photolyase [Pectobacterium atrosepticum SCRI1043] Length = 497 Score = 586 bits (1511), Expect = e-165, Method: Compositional matrix adjust. Identities = 274/471 (58%), Positives = 345/471 (73%), Gaps = 2/471 (0%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 H+VWLRNDLRITDN ALYAAC + A V+AVFIATP QW +H ++ RQ+ F+ +L V Sbjct: 12 THVVWLRNDLRITDNLALYAACQDPSATVLAVFIATPAQWEKHDMAPRQAAFLLENLTLV 71 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128 Q L++KGI YH+C++F S++WL +C +Q+ T LFYN QYEINE RDK ++ RL Sbjct: 72 QHVLAEKGIPLHYHECADFAASVDWLMQFCAEQQATDLFYNHQYEINERLRDKQVKDRLA 131 Query: 129 HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188 V+C + DS+LLPPGS+L +MYKV+TPFR+A I+ L++AD +P P R P+ Sbjct: 132 DSVVCHGYHDSLLLPPGSVLTGNGEMYKVFTPFRQAFIKRLLEADTTCVPAPDAR-GEPI 190 Query: 189 TPSNIPRFFDYPFQAIDPM-FPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSP 247 + F YP +D FP GE+ AL LR+FC+E+V Y +QRD PA+ GTS+LSP Sbjct: 191 NNTAELVPFSYPQCEVDSEDFPCGERAALQQLRRFCREQVQDYDQQRDFPALPGTSKLSP 250 Query: 248 YLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPF 307 YL++G++SPRQC+NRL+ E D+L + + GAF+W NEL+WREFYRHL+ +P +C +PF Sbjct: 251 YLALGIVSPRQCFNRLRAECPDMLERREGGAFTWFNELVWREFYRHLIVSWPQLCKHRPF 310 Query: 308 IPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLV 367 WT+ ++W + L AW+QG TG+PI+DAAM QLN GWMHNRLRMI ASFLVKDLL+ Sbjct: 311 TAWTQWVKWRESPEDLTAWQQGKTGYPIVDAAMHQLNETGWMHNRLRMICASFLVKDLLI 370 Query: 368 DWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRH 427 DWR GE YFMSQLLDGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG+RFDP G FIRH Sbjct: 371 DWREGERYFMSQLLDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGERFDPDGRFIRH 430 Query: 428 WLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478 WLPEL VP + IH PH W DK + LNYPLPIVDHK A TL + AAK Sbjct: 431 WLPELAAVPDKDIHQPHRWADKQHVKLNYPLPIVDHKTARLDTLAAFEAAK 481 >gi|307130086|ref|YP_003882102.1| deoxyribodipyrimidine photolyase, FAD-binding protein [Dickeya dadantii 3937] gi|306527615|gb|ADM97545.1| deoxyribodipyrimidine photolyase, FAD-binding protein [Dickeya dadantii 3937] Length = 476 Score = 586 bits (1510), Expect = e-165, Method: Compositional matrix adjust. Identities = 267/472 (56%), Positives = 346/472 (73%), Gaps = 1/472 (0%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M+ HLVW R+DLR+TDN AL+AAC + DA+V AVFIATP+QW H ++ Q+ F+ +L Sbjct: 1 MTTHLVWFRHDLRLTDNLALHAACQDPDARVEAVFIATPQQWASHAMAPCQAAFLLGNLR 60 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 +Q+ L +K I Y QC +F + WL +C ++VT+LFYNRQYE NE +RD+ LE+ Sbjct: 61 CLQQELREKSIPLHYRQCDDFAAGVRWLADFCRARQVTRLFYNRQYEWNERQRDQQLEQA 120 Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 L C+ FDDS+LLPPGS++ + MYKV+TPFR A ++ L Q D+ S+P PA R G Sbjct: 121 LTDVTECRGFDDSLLLPPGSVVTGSGDMYKVFTPFRAAFLKQLQQRDVGSVPAPAARQQG 180 Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246 +TP+++ F DYP + FP GE AL LR+FC+E+V +Y EQRD+PA+ TS+LS Sbjct: 181 DITPASLAPF-DYPQTDVHADFPAGEPAALQRLRQFCREQVMFYHEQRDLPALAATSKLS 239 Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP 306 PYL++GVLSPRQC+NRL+ E D L + +SGAF+W NEL+WREFYRHL+ F P++C +P Sbjct: 240 PYLALGVLSPRQCFNRLRMEHPDWLARSESGAFTWFNELVWREFYRHLLVFSPALCKHQP 299 Query: 307 FIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLL 366 FI WT ++ W L AW++G TG+PI+DAAMRQLN GWMHNRLRMI ASFLVKDLL Sbjct: 300 FISWTRRVAWRNAPDELAAWQRGETGYPIVDAAMRQLNQTGWMHNRLRMICASFLVKDLL 359 Query: 367 VDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIR 426 +DW GE YFMSQLLDGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG+RFDP+G FIR Sbjct: 360 IDWCEGERYFMSQLLDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGERFDPEGEFIR 419 Query: 427 HWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478 W+PEL +P + +H PH W + ++YPLP+VDHK+A TL + AAK Sbjct: 420 RWVPELAQIPGKAVHQPHEWAIRQQRQIDYPLPMVDHKQARTRTLAAFEAAK 471 >gi|332160904|ref|YP_004297481.1| deoxyribodipyrimidine photolyase [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|318604809|emb|CBY26307.1| deoxyribodipyrimidine photolyase [Yersinia enterocolitica subsp. palearctica Y11] gi|325665134|gb|ADZ41778.1| deoxyribodipyrimidine photolyase [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|330862934|emb|CBX73069.1| deoxyribodipyrimidine photo-lyase [Yersinia enterocolitica W22703] Length = 481 Score = 585 bits (1509), Expect = e-165, Method: Compositional matrix adjust. Identities = 281/475 (59%), Positives = 341/475 (71%), Gaps = 2/475 (0%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M+ HLVW RNDLR+TDN AL+ AC + A VIAVFIATP QW H ++ RQ+ F+ +L Sbjct: 1 MATHLVWFRNDLRVTDNLALHTACQDPQATVIAVFIATPAQWAAHDMAPRQAAFLLQNLQ 60 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 +Q +L+ + I YHQC +F DSI WLD +C QQ+V LFYN QYE+NE RD+ L + Sbjct: 61 LLQDALAARAIPLHYHQCDDFKDSITWLDDFCQQQQVDALFYNHQYELNERMRDEALVVQ 120 Query: 127 LQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185 + HR I C F D+VLLPPGSIL +MYKV+TPFR+A IQ L+ +D RS+P P R T Sbjct: 121 MGHRAIACHGFHDAVLLPPGSILTGNNEMYKVFTPFRRAFIQRLMMSDCRSVPAPKARTT 180 Query: 186 GPVTPSNIPRFFDYPFQAIDP-MFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244 V PS FDYP Q +D +FP GE+ AL LR+FC+E V Y +QRD PA+ GTS Sbjct: 181 AAVIPSQPLAPFDYPQQPVDSQLFPAGEEAALQRLRRFCREDVQDYQQQRDFPAVAGTSC 240 Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304 LSPYL++G+LSPRQC NRL+ E ++L GAF WLNELIWREFYRHL+ YP +C Sbjct: 241 LSPYLALGILSPRQCVNRLRAECPEVLENADGGAFIWLNELIWREFYRHLLVAYPRLCQH 300 Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364 PFI WT+ + WN L AW+QG TG+PI+DAAMRQLN GWMHNRLRMI+ASFLVKD Sbjct: 301 HPFIGWTDAVIWNHSEQQLIAWQQGRTGYPIVDAAMRQLNETGWMHNRLRMISASFLVKD 360 Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424 LL+DWR GE YFMSQLLDGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG+RFD G F Sbjct: 361 LLIDWRQGERYFMSQLLDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGERFDQDGVF 420 Query: 425 IRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479 IR WLPEL VP IH P W ++ SL+YP P+V+HK+A TL + AAK+ Sbjct: 421 IRRWLPELAAVPDSDIHQPWRWAERQQQSLDYPPPLVEHKQARLATLAAFEAAKR 475 >gi|123443172|ref|YP_001007146.1| deoxyribodipyrimidine photolyase [Yersinia enterocolitica subsp. enterocolitica 8081] gi|122090133|emb|CAL12996.1| putative deoxyribodipyrimidine photolyase [Yersinia enterocolitica subsp. enterocolitica 8081] Length = 481 Score = 584 bits (1506), Expect = e-165, Method: Compositional matrix adjust. Identities = 281/475 (59%), Positives = 338/475 (71%), Gaps = 2/475 (0%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M+ HLVW RNDLR+TDN AL+ AC + A VIAVFIATP QW H ++ RQ+ F+ +L Sbjct: 1 MATHLVWFRNDLRVTDNLALHTACQDPQATVIAVFIATPAQWAAHDMAPRQAAFLLQNLQ 60 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 +Q +L+ + I YHQC +F DSI WL +C QQ+V LFYN QYE+NE RD+ L + Sbjct: 61 LLQDALAARAIPLHYHQCDDFKDSITWLADFCQQQQVDALFYNHQYELNERMRDEALMTK 120 Query: 127 LQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185 L HR I C F DSVLLPPGS+L +MYKV+TPFR+A IQ L+ +D RS+P P R T Sbjct: 121 LSHRAIACHGFHDSVLLPPGSVLTGNNEMYKVFTPFRRAFIQRLMMSDCRSVPAPKTRTT 180 Query: 186 GPVTPSNIPRFFDYPFQAIDP-MFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244 V PS FDYP Q +D +FP GE+ AL LR FC+E V Y +QRD PA+ GTS Sbjct: 181 AAVIPSQPLAPFDYPQQPVDSQLFPAGEEAALQRLRSFCREDVQDYQQQRDFPAVAGTSC 240 Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304 LSPYL++G+LSPRQC NRL+ E +L GAF WLNELIWREFYRHL+ YP +C Sbjct: 241 LSPYLALGILSPRQCVNRLRAECPQVLENADGGAFIWLNELIWREFYRHLLVAYPRLCQH 300 Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364 PFI WT+ + WN L AW+QG TG+PI+DAAMRQLN GWMHNRLRMI+ASFLVKD Sbjct: 301 HPFIGWTDAVLWNHSKQQLIAWQQGRTGYPIVDAAMRQLNETGWMHNRLRMISASFLVKD 360 Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424 LL+DWR GE YFMSQLLDGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG+RFD G F Sbjct: 361 LLIDWRQGERYFMSQLLDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGERFDQDGVF 420 Query: 425 IRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479 IR WLPEL VP IH P W ++ SL+YP P+V+HK+A TL + AAK+ Sbjct: 421 IRRWLPELAAVPDSDIHQPWRWAERQQQSLDYPPPLVEHKQARLATLAAFEAAKR 475 >gi|251790504|ref|YP_003005225.1| deoxyribodipyrimidine photolyase [Dickeya zeae Ech1591] gi|247539125|gb|ACT07746.1| Deoxyribodipyrimidine photo-lyase [Dickeya zeae Ech1591] Length = 476 Score = 583 bits (1503), Expect = e-164, Method: Compositional matrix adjust. Identities = 270/478 (56%), Positives = 345/478 (72%), Gaps = 11/478 (2%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M+ HLVW R+DLR+TDN AL+AAC + +A+V AVFIATP+QW H ++ Q+ F+ +L Sbjct: 1 MTTHLVWFRHDLRLTDNLALHAACQDPEARVEAVFIATPQQWASHDMAPCQAAFLLGNLR 60 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 +Q++L +KGI YHQC +F S+ WL ++C + +VT+LFYNRQYE NE RRD+ LE Sbjct: 61 CLQQALQEKGIPLHYHQCDDFAASVRWLTAFCREHQVTRLFYNRQYEWNERRRDEQLEPA 120 Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 L C FDDS+LLPPGS++ + MYKV+TPFR A I+ L Q D+ S+P P R G Sbjct: 121 LAGVTDCYGFDDSLLLPPGSVVTGSGDMYKVFTPFRAAFIKRLQQQDVGSVPAPVSRHQG 180 Query: 187 -----PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQG 241 P+ P FDYP + FP+GE AL LR+FC+E+ +Y E+RD+PA Sbjct: 181 EFTLVPLAP------FDYPQTDVHADFPVGESAALQRLRQFCREQAAFYHERRDLPAQAA 234 Query: 242 TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSV 301 TS+LSPYL++G+LSPRQC+NRL+ E D L +P+SGAF+W NEL+WREFYRHL+ F PS+ Sbjct: 235 TSKLSPYLALGILSPRQCFNRLRMEHPDWLTRPESGAFTWFNELVWREFYRHLLVFSPSL 294 Query: 302 CMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFL 361 C +PFI WT K+ W L AW++G TG+PI+DAAMRQLN GWMHNRLRMI ASFL Sbjct: 295 CKHQPFIGWTRKVAWRNAPDELAAWQRGETGYPIVDAAMRQLNQTGWMHNRLRMICASFL 354 Query: 362 VKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQ 421 VKDLL+DW GE YFMS+LLDGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG+RFDP+ Sbjct: 355 VKDLLIDWCEGERYFMSRLLDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGERFDPE 414 Query: 422 GTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479 G FIR W+PEL +P + +H PH W + ++YP PIVDHK+A TL + AAKK Sbjct: 415 GEFIRRWVPELAQIPGKAVHQPHDWAIRQHRRIDYPAPIVDHKQARTRTLTAFEAAKK 472 >gi|238898396|ref|YP_002924077.1| deoxyribodipyrimidine photolyase (photoreactivation), FAD-binding [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] gi|229466155|gb|ACQ67929.1| deoxyribodipyrimidine photolyase (photoreactivation), FAD-binding [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] Length = 484 Score = 582 bits (1500), Expect = e-164, Method: Compositional matrix adjust. Identities = 278/476 (58%), Positives = 344/476 (72%), Gaps = 2/476 (0%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M HLVWLR+DLR+TDN+AL AAC +S+AKV+AVFIATP QW+ H ++ RQ+ F+ A L Sbjct: 1 MPTHLVWLRHDLRVTDNRALNAACQHSEAKVLAVFIATPIQWKTHHMAPRQAAFLLAHLK 60 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 VQ L++ I YH+C +F D+++WL +C +V KLFYN QYEINE RRD LEK+ Sbjct: 61 AVQARLAELNIPLHYHECDDFQDAVKWLIDFCDHHKVDKLFYNHQYEINESRRDHALEKK 120 Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 L H+VIC+ F D+VLLPP +L QMY+V+TPFR+A ++ L +L +PVP R Sbjct: 121 LSHQVICQGFHDAVLLPPEKVLKENGQMYQVFTPFRRAFLKQLFLTNLSCIPVPKKRDGP 180 Query: 187 PVTPSNIPRFFDYPFQAID-PMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245 V+ S FDYP D +FPIGE A L +FC KV Y RD+ AI+GTS L Sbjct: 181 QVSISLTELSFDYPLLDFDTELFPIGEAAAQKQLTRFCDAKVSAYSHARDMLAIKGTSGL 240 Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305 SPYL++G+LSPRQC L+E F + I+ GAF WLNELIWR+FYRHL+ YP + G Sbjct: 241 SPYLTLGILSPRQCLGCLREAFPEG-IEDHKGAFDWLNELIWRDFYRHLLIAYPRLSKGH 299 Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365 PFI WT ++W+ LL+ W+QG TG+PI+DAAMRQLNT GWMHNRLRMITASFLVKDL Sbjct: 300 PFIGWTTFVQWHHSDSLLEKWQQGQTGYPIVDAAMRQLNTTGWMHNRLRMITASFLVKDL 359 Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425 L+DWR+GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG+RFDP+G FI Sbjct: 360 LIDWRLGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGERFDPKGEFI 419 Query: 426 RHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481 RHWLPELN VP IH P SW +KN L+YP PIVDH++A TL+ + AK S Sbjct: 420 RHWLPELNPVPESEIHQPWSWAEKNHKQLDYPTPIVDHQQARQATLSAFATAKNLS 475 >gi|242238580|ref|YP_002986761.1| deoxyribodipyrimidine photolyase [Dickeya dadantii Ech703] gi|242130637|gb|ACS84939.1| Deoxyribodipyrimidine photo-lyase [Dickeya dadantii Ech703] Length = 477 Score = 582 bits (1499), Expect = e-164, Method: Compositional matrix adjust. Identities = 271/473 (57%), Positives = 346/473 (73%), Gaps = 1/473 (0%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M+ HLVW RNDLRITDN ALYAAC + +A+V AVFIATP QW++H ++ RQ+ ++ +L Sbjct: 1 MTTHLVWFRNDLRITDNLALYAACQDPEAQVEAVFIATPGQWKRHEMAPRQAALLFDCVL 60 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 Q+Q++L +KGI YHQC +FD ++EWL + C Q++ T LFYNRQYE NE RRD+ L + Sbjct: 61 QLQRALYEKGIPLHYHQCEDFDGALEWLAALCRQRQATHLFYNRQYEWNEQRRDQALSRH 120 Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 L++ V ++FDDS+LL PGS++ + +MYKV+TPFR A I L+Q S+P P R Sbjct: 121 LENGVRIQAFDDSLLLAPGSVVTGSGEMYKVFTPFRTAFITQLLQTSTDSVPAPTARRQP 180 Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246 + FDYP + FP GE AL LR+FC+E+V+ Y E RD+P+ TS+LS Sbjct: 181 LPPLTPP-APFDYPQLDVAGDFPAGEAAALQRLRQFCREQVHVYHELRDVPSRPATSRLS 239 Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP 306 PYL++GVLSPRQC+NRL+ E D L + + GAF W NEL+WREFYRHL+ F+P++C +P Sbjct: 240 PYLALGVLSPRQCFNRLRAEHPDWLAQREGGAFCWFNELVWREFYRHLLVFHPALCRHRP 299 Query: 307 FIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLL 366 FI WT+++ W L AW++G TG+PI+DA MRQL+ GWMHNRLRMI ASFLVKDLL Sbjct: 300 FIAWTDRVVWRSAPQELLAWQRGETGYPIVDAGMRQLHQTGWMHNRLRMICASFLVKDLL 359 Query: 367 VDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIR 426 +DWR GE YFMSQLLDGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG+RFDP G FIR Sbjct: 360 IDWREGERYFMSQLLDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGERFDPNGDFIR 419 Query: 427 HWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479 W+PEL VP + IH PH W +K L+YPLPIVDHK+A TL + AAKK Sbjct: 420 RWVPELAGVPGKDIHQPHRWAEKMRCRLDYPLPIVDHKQARVRTLAAFDAAKK 472 >gi|271499741|ref|YP_003332766.1| Deoxyribodipyrimidine photo-lyase [Dickeya dadantii Ech586] gi|270343296|gb|ACZ76061.1| Deoxyribodipyrimidine photo-lyase [Dickeya dadantii Ech586] Length = 481 Score = 581 bits (1497), Expect = e-163, Method: Compositional matrix adjust. Identities = 266/475 (56%), Positives = 346/475 (72%), Gaps = 1/475 (0%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M+ HLVW R+DLR+TDN AL+AAC + DA+V AVFIATP+QW H ++ Q+ F+ +L Sbjct: 1 MTTHLVWFRHDLRLTDNLALHAACQDPDARVEAVFIATPQQWASHDMAPCQAAFLLGNLR 60 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 +Q++L +KGI Y QC +F S+ WL +C +++VT+LFYNRQYE NE +RD L + Sbjct: 61 CLQQALQEKGIPLHYQQCDDFAASVRWLADFCRERQVTQLFYNRQYEWNERQRDGQLTQA 120 Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 L +C+ FDDS+LLPPGS++ + +MYKV+TPFR A I+ L D+ SLP P R G Sbjct: 121 LAGVTVCREFDDSLLLPPGSVVTGSGEMYKVFTPFRTAFIKRLQLQDVSSLPAPVTRQQG 180 Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246 VT + + F DYP + FP+GE A+ LR+FC+E+V +Y RD+PA TS+LS Sbjct: 181 DVTLAPLAPF-DYPQAEVHADFPVGEAAAVQRLRQFCREQVAFYHALRDLPARPATSKLS 239 Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP 306 PYL++G+LSPRQC+NRL+ E D L +P+ GAF+W NEL+WREFYRHL+ F PS+C +P Sbjct: 240 PYLALGILSPRQCFNRLRMEHPDWLSQPEGGAFTWFNELVWREFYRHLLVFSPSLCRHQP 299 Query: 307 FIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLL 366 FI WT ++ W L AW++G TG+PI+DAAMRQLN GWMHNRLRMI ASFLVKDLL Sbjct: 300 FIGWTRRVAWRHAPDELAAWQRGETGYPIVDAAMRQLNQTGWMHNRLRMICASFLVKDLL 359 Query: 367 VDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIR 426 +DWR GE YFMS+LLDGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG+RFDP G FIR Sbjct: 360 IDWREGERYFMSRLLDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGERFDPDGEFIR 419 Query: 427 HWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481 HW+PEL +P + +H PH W ++YP PIVDHK+A TL + AAK+++ Sbjct: 420 HWIPELAQIPGKAVHQPHDWAACQHRRIDYPAPIVDHKQARTRTLAAFEAAKQEA 474 >gi|292898878|ref|YP_003538247.1| deoxyribodipyrimidine photolyase [Erwinia amylovora ATCC 49946] gi|291198726|emb|CBJ45835.1| deoxyribodipyrimidine photolyase [Erwinia amylovora ATCC 49946] Length = 482 Score = 580 bits (1495), Expect = e-163, Method: Compositional matrix adjust. Identities = 276/476 (57%), Positives = 349/476 (73%), Gaps = 5/476 (1%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M+ HLVWLRNDLRI DN ALYAAC + A VIA+FIATP+QWR H ++ +Q+ FI+ SL Sbjct: 1 MTTHLVWLRNDLRINDNHALYAACRSEQANVIALFIATPQQWRMHHMAPKQAEFIWQSLQ 60 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 VQ+SL+ KGIV QC +F S+ L +C + RV +LFYN QYE+NE +RD +E+ Sbjct: 61 DVQQSLAAKGIVLHVAQCDDFSASVTLLQDFCREHRVDRLFYNYQYEVNERQRDAAVERA 120 Query: 127 L-QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185 L + V+ + FDDS+LLPPGS+L +MYKV+TPF KA ++ L Q LP PA+R + Sbjct: 121 LFEDDVVSQGFDDSLLLPPGSVLTGNREMYKVFTPFSKAFVKRLQQGLPECLPAPAVRQS 180 Query: 186 GPVTP-SNIPRFFDYPFQAIDP-MFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS 243 G + P + + FDYP + I+ +FP GE+ A+ LR+FC++ V Y +QRD+PA GTS Sbjct: 181 GAIEPEAGSLKPFDYPREDIESSLFPSGEKAAIARLREFCQQAVTDYPKQRDLPARDGTS 240 Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCM 303 +LS YL+ GVLSPRQC +RL ++ L S F WLNELIWREFYRHL+ +P++C Sbjct: 241 RLSVYLATGVLSPRQCLHRLLKQHPAGL--EDSRVFVWLNELIWREFYRHLLVAFPALCR 298 Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363 +PF WT ++W D L AW+QG TG+PI+DAAMRQLN++GWMHNRLRMITASFLVK Sbjct: 299 HQPFTRWTNSVKWRDDKQQLTAWQQGKTGYPIVDAAMRQLNSLGWMHNRLRMITASFLVK 358 Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423 DLL+DWR GE YFMSQLLDGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG+RFD G Sbjct: 359 DLLIDWREGERYFMSQLLDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGERFDKDGE 418 Query: 424 FIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479 FIR WLPEL VPT+YIH PH W KN +L+YPLP+VDHK+A TL+ + AA+K Sbjct: 419 FIRRWLPELRQVPTEYIHQPHQWARKNQRTLDYPLPLVDHKQARQQTLDVFEAARK 474 >gi|22125169|ref|NP_668592.1| deoxyribodipyrimidine photolyase [Yersinia pestis KIM 10] gi|45442282|ref|NP_993821.1| deoxyribodipyrimidine photolyase [Yersinia pestis biovar Microtus str. 91001] gi|108811346|ref|YP_647113.1| deoxyribodipyrimidine photolyase [Yersinia pestis Nepal516] gi|149365412|ref|ZP_01887447.1| putative deoxyribodipyrimidine photolyase [Yersinia pestis CA88-4125] gi|162421421|ref|YP_001607911.1| deoxyribodipyrimidine photolyase [Yersinia pestis Angola] gi|165925225|ref|ZP_02221057.1| deoxyribodipyrimidine photolyase [Yersinia pestis biovar Orientalis str. F1991016] gi|165937153|ref|ZP_02225718.1| deoxyribodipyrimidine photolyase [Yersinia pestis biovar Orientalis str. IP275] gi|166008496|ref|ZP_02229394.1| deoxyribodipyrimidine photolyase [Yersinia pestis biovar Antiqua str. E1979001] gi|166212293|ref|ZP_02238328.1| deoxyribodipyrimidine photolyase [Yersinia pestis biovar Antiqua str. B42003004] gi|167421168|ref|ZP_02312921.1| deoxyribodipyrimidine photolyase [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167423664|ref|ZP_02315417.1| deoxyribodipyrimidine photolyase [Yersinia pestis biovar Mediaevalis str. K1973002] gi|167468999|ref|ZP_02333703.1| deoxyribodipyrimidine photolyase [Yersinia pestis FV-1] gi|218929768|ref|YP_002347643.1| deoxyribodipyrimidine photolyase [Yersinia pestis CO92] gi|229838256|ref|ZP_04458415.1| deoxyribodipyrimidine photolyase, FAD-binding [Yersinia pestis biovar Orientalis str. PEXU2] gi|229895550|ref|ZP_04510721.1| deoxyribodipyrimidine photolyase, FAD-binding [Yersinia pestis Pestoides A] gi|229898820|ref|ZP_04513965.1| deoxyribodipyrimidine photolyase, FAD-binding [Yersinia pestis biovar Orientalis str. India 195] gi|229901594|ref|ZP_04516716.1| deoxyribodipyrimidine photolyase, FAD-binding [Yersinia pestis Nepal516] gi|270489781|ref|ZP_06206855.1| FAD binding domain of DNA photolyase [Yersinia pestis KIM D27] gi|294504486|ref|YP_003568548.1| putative deoxyribodipyrimidine photolyase [Yersinia pestis Z176003] gi|21958032|gb|AAM84843.1|AE013730_2 deoxyribodipyrimidine photolyase (photoreactivation) [Yersinia pestis KIM 10] gi|45437146|gb|AAS62698.1| putative deoxyribodipyrimidine photolyase [Yersinia pestis biovar Microtus str. 91001] gi|108774994|gb|ABG17513.1| Deoxyribodipyrimidine photo-lyase type I [Yersinia pestis Nepal516] gi|115348379|emb|CAL21314.1| putative deoxyribodipyrimidine photolyase [Yersinia pestis CO92] gi|149291825|gb|EDM41899.1| putative deoxyribodipyrimidine photolyase [Yersinia pestis CA88-4125] gi|162354236|gb|ABX88184.1| deoxyribodipyrimidine photolyase [Yersinia pestis Angola] gi|165915016|gb|EDR33628.1| deoxyribodipyrimidine photolyase [Yersinia pestis biovar Orientalis str. IP275] gi|165922832|gb|EDR39983.1| deoxyribodipyrimidine photolyase [Yersinia pestis biovar Orientalis str. F1991016] gi|165992878|gb|EDR45179.1| deoxyribodipyrimidine photolyase [Yersinia pestis biovar Antiqua str. E1979001] gi|166206224|gb|EDR50704.1| deoxyribodipyrimidine photolyase [Yersinia pestis biovar Antiqua str. B42003004] gi|166960657|gb|EDR56678.1| deoxyribodipyrimidine photolyase [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167057834|gb|EDR67580.1| deoxyribodipyrimidine photolyase [Yersinia pestis biovar Mediaevalis str. K1973002] gi|229681523|gb|EEO77617.1| deoxyribodipyrimidine photolyase, FAD-binding [Yersinia pestis Nepal516] gi|229688368|gb|EEO80439.1| deoxyribodipyrimidine photolyase, FAD-binding [Yersinia pestis biovar Orientalis str. India 195] gi|229694622|gb|EEO84669.1| deoxyribodipyrimidine photolyase, FAD-binding [Yersinia pestis biovar Orientalis str. PEXU2] gi|229701356|gb|EEO89384.1| deoxyribodipyrimidine photolyase, FAD-binding [Yersinia pestis Pestoides A] gi|262362522|gb|ACY59243.1| putative deoxyribodipyrimidine photolyase [Yersinia pestis D106004] gi|262366473|gb|ACY63030.1| putative deoxyribodipyrimidine photolyase [Yersinia pestis D182038] gi|270338285|gb|EFA49062.1| FAD binding domain of DNA photolyase [Yersinia pestis KIM D27] gi|294354945|gb|ADE65286.1| putative deoxyribodipyrimidine photolyase [Yersinia pestis Z176003] gi|320016095|gb|ADV99666.1| deoxyribodipyrimidine photolyase [Yersinia pestis biovar Medievalis str. Harbin 35] Length = 487 Score = 580 bits (1494), Expect = e-163, Method: Compositional matrix adjust. Identities = 278/477 (58%), Positives = 345/477 (72%), Gaps = 4/477 (0%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 MS HLVW RNDLR+TDN AL+AAC + A VIAVFIATP QW HG++ RQ+ F+ +L Sbjct: 1 MSTHLVWFRNDLRVTDNLALHAACQDPQASVIAVFIATPVQWAAHGMAPRQAAFLRQNLQ 60 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 +Q +L+ +GI YHQC +F S WL +C QQ+V LFY++QYE+NE RD L + Sbjct: 61 HLQAALAARGIPLHYHQCDDFQASNTWLVDFCQQQQVDSLFYSQQYELNERLRDDALAVQ 120 Query: 127 LQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185 L R I C+SF DSVLL PG++L +MYKV+TPFR+A IQ L+ +D +P P R Sbjct: 121 LSERAITCQSFHDSVLLAPGTVLTGNNEMYKVFTPFRRAFIQRLLMSDNHCVPAPKARHA 180 Query: 186 GPVTPSNIPRFFDYPFQAIDP-MFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244 PV S +P FDYP Q++D +FP GE AL LR+FC+E+V Y + RD+PA+ GTS Sbjct: 181 PPVLLSPLP--FDYPQQSVDSQLFPAGEDAALQRLRRFCREQVQDYRQYRDLPAVPGTSC 238 Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304 LSPYL +GVLSPRQC+NRL E ++L SGAF+WLNELIWREFYRHL+ YP +C Sbjct: 239 LSPYLVLGVLSPRQCFNRLWAESPEMLENADSGAFTWLNELIWREFYRHLLVAYPRLCQH 298 Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364 PFI WT+ + WN+ L+AW+QG TG+PI+DAAMRQ+N GWMHNRLRMI+ASFLVKD Sbjct: 299 HPFIGWTDGLVWNRSESQLKAWQQGQTGYPIVDAAMRQMNETGWMHNRLRMISASFLVKD 358 Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424 LL+DWR GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG+RFD G F Sbjct: 359 LLIDWRQGERYFMSQLVDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGERFDKDGVF 418 Query: 425 IRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481 IR WLPEL VP IH P W ++ L+YP+P+VDHK+A TL + AAK+ S Sbjct: 419 IRRWLPELAAVPDSDIHQPWRWAERQQQHLDYPVPLVDHKQARLATLAAFEAAKRDS 475 >gi|186896329|ref|YP_001873441.1| deoxyribodipyrimidine photolyase [Yersinia pseudotuberculosis PB1/+] gi|186699355|gb|ACC89984.1| DNA photolyase FAD-binding [Yersinia pseudotuberculosis PB1/+] Length = 487 Score = 579 bits (1493), Expect = e-163, Method: Compositional matrix adjust. Identities = 278/477 (58%), Positives = 345/477 (72%), Gaps = 4/477 (0%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 MS HLVW RNDLR+TDN AL+AAC + A VIAVFIATP QW HG++ RQ+ F+ +L Sbjct: 1 MSTHLVWFRNDLRVTDNLALHAACQDPQASVIAVFIATPVQWAAHGMAPRQAAFLRQNLQ 60 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 +Q +L+ +GI YHQC +F S WL +C QQ+V LFY++QYE+NE RD L + Sbjct: 61 HLQAALAARGIPLHYHQCDDFQASNTWLVDFCQQQQVDSLFYSQQYELNERLRDDALAVQ 120 Query: 127 LQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185 L R I C+SF DSVLL PG++L +MYKV+TPFR+A IQ L+ +D +P P R Sbjct: 121 LSGRAITCQSFHDSVLLAPGTVLTGNNEMYKVFTPFRRAFIQRLLMSDNHCVPAPKTRHA 180 Query: 186 GPVTPSNIPRFFDYPFQAIDP-MFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244 PV S +P FDYP Q++D +FP GE AL LR+FC+E+V Y + RD+PA+ GTS Sbjct: 181 PPVLLSPLP--FDYPQQSVDSQLFPAGEDAALQRLRRFCREQVQDYRQYRDLPAVPGTSC 238 Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304 LSPYL +GVLSPRQC+NRL E ++L SGAF+WLNELIWREFYRHL+ YP +C Sbjct: 239 LSPYLVLGVLSPRQCFNRLWAESPEMLESADSGAFTWLNELIWREFYRHLLVAYPRLCQH 298 Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364 PFI WT+ + WN+ L+AW+QG TG+PI+DAAMRQ+N GWMHNRLRMI+ASFLVKD Sbjct: 299 HPFIGWTDGLVWNRSESQLKAWQQGQTGYPIVDAAMRQMNETGWMHNRLRMISASFLVKD 358 Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424 LL+DWR GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG+RFD G F Sbjct: 359 LLIDWRQGERYFMSQLVDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGERFDKDGVF 418 Query: 425 IRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481 IR WLPEL VP IH P W ++ L+YP+P+VDHK+A TL + AAK+ S Sbjct: 419 IRRWLPELAAVPDSDIHQPWRWAERQQQHLDYPVPLVDHKQARLATLAAFEAAKRDS 475 >gi|238752103|ref|ZP_04613586.1| Deoxyribodipyrimidine photo-lyase [Yersinia rohdei ATCC 43380] gi|238709680|gb|EEQ01915.1| Deoxyribodipyrimidine photo-lyase [Yersinia rohdei ATCC 43380] Length = 480 Score = 579 bits (1493), Expect = e-163, Method: Compositional matrix adjust. Identities = 276/474 (58%), Positives = 344/474 (72%), Gaps = 1/474 (0%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M+ HLVW RNDLRITDN AL+AAC +S A VIAVF+ATP QW + ++ RQ+ F++ +L Sbjct: 1 MATHLVWFRNDLRITDNLALHAACKDSQATVIAVFVATPVQWGKQDMAPRQAAFLWQNLQ 60 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 Q++ L+++ I YHQC F DSI WLD +C Q ++ LFYN+QYE NE +RD L + Sbjct: 61 QLRAVLAERAIPLHYHQCDEFKDSINWLDDFCQQHQIDALFYNQQYEWNERQRDDALIAK 120 Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 L RVIC SF DS+LLPPGS+L +MY+V+TPFR+A IQ L+ +D RS+P P R T Sbjct: 121 LAGRVICHSFHDSLLLPPGSVLTGNGKMYQVFTPFRRAFIQRLMMSDYRSVPAPKARQTK 180 Query: 187 PVTPSNIPRFFDYPFQAID-PMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245 FDYP Q++D +FP GE+ AL LR FC+E+V Y +QRD+PA+ GTS L Sbjct: 181 IAIEPASWGPFDYPQQSVDNQLFPAGEEAALLRLRTFCREQVQDYQQQRDLPAVAGTSCL 240 Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305 SPYL++G+LSPRQC NRL+ E ++ K GAF WLNELIWREFYRHL+ YP +C + Sbjct: 241 SPYLALGILSPRQCVNRLRAECPEVFEKADGGAFIWLNELIWREFYRHLLVAYPRLCQHR 300 Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365 PFI WT+ + WN L AW+QG TG+PI+DAAMRQLN GWMHNRLRMI+ASFLVKDL Sbjct: 301 PFIDWTDAVVWNHSEQHLLAWQQGRTGYPIVDAAMRQLNETGWMHNRLRMISASFLVKDL 360 Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425 L++WR GE YFMSQLLDGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG+RFD +G FI Sbjct: 361 LINWRHGERYFMSQLLDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGERFDKKGIFI 420 Query: 426 RHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479 R WLPEL+ VP IH P W + L+YP P+VDHK+A TL + AAK+ Sbjct: 421 RRWLPELSAVPDSDIHQPWHWAQQQQHPLDYPPPLVDHKQARLATLAAFDAAKR 474 >gi|170023409|ref|YP_001719914.1| deoxyribodipyrimidine photolyase [Yersinia pseudotuberculosis YPIII] gi|169749943|gb|ACA67461.1| Deoxyribodipyrimidine photo-lyase [Yersinia pseudotuberculosis YPIII] Length = 487 Score = 579 bits (1492), Expect = e-163, Method: Compositional matrix adjust. Identities = 278/477 (58%), Positives = 345/477 (72%), Gaps = 4/477 (0%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 MS HLVW RNDLR+TDN AL+AAC + A VIAVFIATP QW HG++ RQ+ F+ +L Sbjct: 1 MSTHLVWFRNDLRVTDNLALHAACQDPQASVIAVFIATPVQWATHGMAPRQAAFLRQNLQ 60 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 +Q +L+ +GI YHQC +F S WL +C QQ+V LFY++QYE+NE RD L + Sbjct: 61 HLQAALAARGIPLHYHQCDDFQASNTWLVDFCQQQQVDSLFYSQQYELNERLRDDALAVQ 120 Query: 127 LQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185 L R I C+SF DSVLL PG++L +MYKV+TPFR+A IQ L+ +D +P P R Sbjct: 121 LSGRAITCQSFHDSVLLAPGTVLTGNNEMYKVFTPFRRAFIQRLLMSDNHCVPAPKARHA 180 Query: 186 GPVTPSNIPRFFDYPFQAIDP-MFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244 PV S +P FDYP Q++D +FP GE AL LR+FC+E+V Y + RD+PA+ GTS Sbjct: 181 PPVLLSPLP--FDYPQQSVDSQLFPAGEDAALQRLRRFCREQVQDYRQYRDLPAVPGTSC 238 Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304 LSPYL +GVLSPRQC+NRL E ++L SGAF+WLNELIWREFYRHL+ YP +C Sbjct: 239 LSPYLVLGVLSPRQCFNRLWAESPEMLENADSGAFTWLNELIWREFYRHLLVAYPRLCQH 298 Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364 PFI WT+ + WN+ L+AW+QG TG+PI+DAAMRQ+N GWMHNRLRMI+ASFLVKD Sbjct: 299 HPFIGWTDGLVWNRSESQLKAWQQGQTGYPIVDAAMRQMNETGWMHNRLRMISASFLVKD 358 Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424 LL+DWR GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG+RFD G F Sbjct: 359 LLIDWRQGERYFMSQLVDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGERFDKDGVF 418 Query: 425 IRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481 IR WLPEL VP IH P W ++ L+YP+P+VDHK+A TL + AAK+ S Sbjct: 419 IRRWLPELAAVPDSDIHQPWRWAERQQQHLDYPVPLVDHKQARLATLAAFEAAKRDS 475 >gi|51597229|ref|YP_071420.1| deoxyribodipyrimidine photolyase [Yersinia pseudotuberculosis IP 32953] gi|51590511|emb|CAH22151.1| putative deoxyribodipyrimidine photolyase [Yersinia pseudotuberculosis IP 32953] Length = 487 Score = 579 bits (1492), Expect = e-163, Method: Compositional matrix adjust. Identities = 278/477 (58%), Positives = 345/477 (72%), Gaps = 4/477 (0%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 MS HLVW RNDLR+TDN AL+AAC + A VIAVFIATP QW HG++ RQ+ F+ +L Sbjct: 1 MSTHLVWFRNDLRVTDNLALHAACQDPQASVIAVFIATPVQWAAHGMAPRQAAFLRQNLQ 60 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 +Q +L+ +GI YHQC +F S WL +C QQ+V LFY++QYE+NE RD L + Sbjct: 61 HLQAALAARGIPLHYHQCDDFQASNTWLVDFCQQQQVDSLFYSQQYELNERLRDDALAVQ 120 Query: 127 LQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185 L R I C+SF DSVLL PG++L +MYKV+TPFR+A IQ L+ +D +P P R Sbjct: 121 LSGRAITCQSFHDSVLLAPGTVLTGNNEMYKVFTPFRRAFIQRLLMSDNHCVPAPKARHA 180 Query: 186 GPVTPSNIPRFFDYPFQAIDP-MFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244 PV S +P FDYP Q++D +FP GE AL LR+FC+E+V Y + RD+PA+ GTS Sbjct: 181 PPVLLSPLP--FDYPQQSVDSQLFPAGEDAALQRLRRFCREQVQDYRQYRDLPAVPGTSC 238 Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304 LSPYL +GVLSPRQC+NRL E ++L SGAF+WLNELIWREFYRHL+ YP +C Sbjct: 239 LSPYLVLGVLSPRQCFNRLWAESPEMLENADSGAFTWLNELIWREFYRHLLVAYPRLCQH 298 Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364 PFI WT+ + WN+ L+AW+QG TG+PI+DAAMRQ+N GWMHNRLRMI+ASFLVKD Sbjct: 299 HPFIGWTDGLVWNRSESQLKAWQQGQTGYPIVDAAMRQMNETGWMHNRLRMISASFLVKD 358 Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424 LL+DWR GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG+RFD G F Sbjct: 359 LLIDWRQGERYFMSQLVDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGERFDKDGVF 418 Query: 425 IRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481 IR WLPEL VP IH P W ++ L+YP+P+VDHK+A TL + AAK+ S Sbjct: 419 IRRWLPELAAVPDSDIHQPWRWAERQQQHLDYPVPLVDHKQARLATLAAFEAAKRDS 475 >gi|145598860|ref|YP_001162936.1| deoxyribodipyrimidine photolyase [Yersinia pestis Pestoides F] gi|145210556|gb|ABP39963.1| Deoxyribodipyrimidine photo-lyase type I [Yersinia pestis Pestoides F] Length = 487 Score = 579 bits (1492), Expect = e-163, Method: Compositional matrix adjust. Identities = 278/477 (58%), Positives = 344/477 (72%), Gaps = 4/477 (0%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 MS HLVW RNDLR+TDN AL+AAC + A VIAVFIATP QW HG++ RQ+ F+ +L Sbjct: 1 MSTHLVWFRNDLRVTDNLALHAACQDPQASVIAVFIATPVQWAAHGMAPRQAAFLRQNLQ 60 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 +Q +L+ +GI YHQC +F S WL +C QQ+V LFY++QYE+NE RD L + Sbjct: 61 HLQAALAARGIPLHYHQCDDFQASNTWLVDFCQQQQVDSLFYSQQYELNERLRDDALAVQ 120 Query: 127 LQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185 L R I C+SF DSVLL PG++L +MYKV+TPFR+A IQ L+ +D +P P R Sbjct: 121 LSERAITCQSFHDSVLLAPGTVLTGNNEMYKVFTPFRRAFIQRLLMSDNHCVPAPKARHA 180 Query: 186 GPVTPSNIPRFFDYPFQAIDP-MFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244 PV S +P FDYP Q++D +FP GE AL LR+FC+E+V Y + RD+PA+ GTS Sbjct: 181 PPVLLSPLP--FDYPQQSVDSQLFPAGEDAALQRLRRFCREQVQDYRQYRDLPAVPGTSC 238 Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304 LSPYL +GVLSPRQC+NRL E ++L SGAF+WLNELIWREFYRHL+ YP +C Sbjct: 239 LSPYLVLGVLSPRQCFNRLWAESPEMLENADSGAFTWLNELIWREFYRHLLVAYPRLCQH 298 Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364 PFI WT+ + WN+ L+AW+QG TG+PI+DAAMRQ+N GWMHNRLRMI+ASFLVKD Sbjct: 299 HPFIGWTDGLVWNRSESQLKAWQQGQTGYPIVDAAMRQMNETGWMHNRLRMISASFLVKD 358 Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424 LL+DWR GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG+RFD G F Sbjct: 359 LLIDWRQGERYFMSQLVDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGERFDKDGVF 418 Query: 425 IRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481 IR WLPEL VP IH P W ++ L+YP P+VDHK+A TL + AAK+ S Sbjct: 419 IRRWLPELAAVPDSDIHQPWRWAERQQQHLDYPAPLVDHKQARLATLAAFEAAKRDS 475 >gi|238793873|ref|ZP_04637493.1| Deoxyribodipyrimidine photo-lyase [Yersinia intermedia ATCC 29909] gi|238726776|gb|EEQ18310.1| Deoxyribodipyrimidine photo-lyase [Yersinia intermedia ATCC 29909] Length = 485 Score = 578 bits (1490), Expect = e-163, Method: Compositional matrix adjust. Identities = 285/483 (59%), Positives = 345/483 (71%), Gaps = 10/483 (2%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M+ HL+W RNDLRITDN AL+AAC + A VIA+FIATP QW H ++ RQ+ F+ +L Sbjct: 1 MATHLIWFRNDLRITDNLALHAACQDPQATVIALFIATPAQWAAHDMAPRQAAFLLQNLQ 60 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 Q+Q +L+ +GI YHQC +F DSI WLD +C QQ+V LF+N+QYE+NE RD L R Sbjct: 61 QLQHALAIRGIPLHYHQCDDFQDSIIWLDDFCQQQQVDALFFNQQYELNEQLRDGALVTR 120 Query: 127 LQHR------VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVP 180 L HR + C FDDSVLLPPGS+L +MYKV+TPFR+A IQ L+ ++ R +P P Sbjct: 121 LNHRQGAGHTITCHRFDDSVLLPPGSVLTGNNEMYKVFTPFRRAFIQRLMMSECRCVPAP 180 Query: 181 AIRLTGPVTPSNIPRF-FDYPFQAID-PMFPIGEQNALHILRKFCKEKVYYYVEQRDIPA 238 IR + V P +P FDYP Q +D +FP GE+ AL LR FC+E+V Y QRD+PA Sbjct: 181 KIRDSVAVMP--LPLLPFDYPQQPVDNQLFPAGEEAALQRLRSFCREQVQDYQLQRDLPA 238 Query: 239 IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFY 298 + GTS LSPYL++GVLSPRQC+NRL E LL GAF+WLNELIWREFYRHL+ Y Sbjct: 239 VAGTSCLSPYLALGVLSPRQCFNRLLAECPALLENTDGGAFTWLNELIWREFYRHLLVAY 298 Query: 299 PSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITA 358 P +C +PFI WT+ + WN L AW+QG TG+PI+DAAMRQLN GWMHNRLRMI+A Sbjct: 299 PRLCRHRPFIDWTDGVIWNHSEQQLIAWQQGRTGYPIVDAAMRQLNETGWMHNRLRMISA 358 Query: 359 SFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRF 418 SFLVKDLL+DWR GE YFMSQLLDGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG+RF Sbjct: 359 SFLVKDLLIDWRHGERYFMSQLLDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGERF 418 Query: 419 DPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478 D G FIR WLPEL VP IH P W + L+YPLP+VDHK A TL + AAK Sbjct: 419 DSNGAFIRRWLPELAGVPDSDIHQPWRWAQRQQQHLDYPLPLVDHKLARLATLAAFEAAK 478 Query: 479 KQS 481 + Sbjct: 479 RDG 481 >gi|283479118|emb|CAY75034.1| deoxyribodipyrimidine photolyase (photoreactivation) [Erwinia pyrifoliae DSM 12163] Length = 504 Score = 578 bits (1489), Expect = e-163, Method: Compositional matrix adjust. Identities = 276/477 (57%), Positives = 348/477 (72%), Gaps = 5/477 (1%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M+ HLVWLRNDLRI DN ALYAAC + A VIA+FIATP QWR H ++ +Q+ FI+ SL Sbjct: 28 MTTHLVWLRNDLRINDNHALYAACRSEQANVIALFIATPGQWRTHLMAPKQAEFIWQSLQ 87 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 VQ+SL+ +GIV QC +F S+ L +C + RV +LFYN QYE+NE +RD +E+ Sbjct: 88 DVQQSLAARGIVLHVAQCDDFSASVTLLQEFCREHRVNRLFYNYQYEVNERQRDAAVERT 147 Query: 127 LQH-RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185 LQH V+ + FDDS+LLPPGS+L +MYKV+TPF KA ++ L Q LP PA+R Sbjct: 148 LQHDNVVVQGFDDSLLLPPGSVLTGNREMYKVFTPFSKAFVKRLQQGLPECLPAPAVRPG 207 Query: 186 GPVTP-SNIPRFFDYPFQAIDP-MFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS 243 G V + FDYP + ID +FP GE+ A+ LR+FC++ V Y ++R++PA GTS Sbjct: 208 GAVEARAGSLVAFDYPREDIDAGLFPSGEKAAIARLREFCQQAVADYPDKRNLPACDGTS 267 Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCM 303 +LS YL+ GVLSPRQC +RL ++ L S F WLNELIWREFYRHL+ +P++C Sbjct: 268 RLSVYLATGVLSPRQCLHRLLKQHPGAL--EDSRVFVWLNELIWREFYRHLLVAFPALCR 325 Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363 +PF+ WT+ ++W DS L AW+QG TG+PI+DAAMRQLN++GWMHNRLRMITASFLVK Sbjct: 326 HQPFMRWTKSVKWRVDSQQLTAWQQGITGYPIVDAAMRQLNSLGWMHNRLRMITASFLVK 385 Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423 DLL+DWR GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG+RFD G Sbjct: 386 DLLIDWREGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGERFDKDGE 445 Query: 424 FIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQ 480 FIRHWLPEL +VP +YIH PH W KN +L+YP P+VDHK A TL+ + AAK Q Sbjct: 446 FIRHWLPELRHVPPEYIHQPHQWARKNRQTLDYPQPLVDHKLARQQTLDAFEAAKTQ 502 >gi|188534445|ref|YP_001908242.1| deoxyribodipyrimidine photolyase [Erwinia tasmaniensis Et1/99] gi|188029487|emb|CAO97364.1| Deoxyribodipyrimidine photo-lyase [Erwinia tasmaniensis Et1/99] Length = 477 Score = 578 bits (1489), Expect = e-162, Method: Compositional matrix adjust. Identities = 274/477 (57%), Positives = 348/477 (72%), Gaps = 5/477 (1%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M+ HLVWLRNDLRI DN ALYAAC + AKVIA+FIATPEQWR H ++ +Q+ FI+ SL Sbjct: 1 MTTHLVWLRNDLRINDNHALYAACRSQQAKVIALFIATPEQWRAHHMAPKQAEFIWQSLQ 60 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 VQ+SL+ KGI QC +FD S+ L ++C + RV +LFYN QYE+NE +RD +E+ Sbjct: 61 DVQQSLAAKGIALHVAQCDDFDASVPLLQAFCREHRVDRLFYNYQYEVNERQRDAAMEQA 120 Query: 127 L-QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185 L + V+ + FDDS+LLPPGS+L +MYKV+TPF KA ++ L Q LP P +R Sbjct: 121 LFEDDVVAQGFDDSLLLPPGSVLTGNREMYKVFTPFSKAFVKRLQQGLPECLPAPDVRQG 180 Query: 186 GPVTPSNIP-RFFDYPFQAIDP-MFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS 243 G + P F+YP + IDP +FP GE+ A+ LR+FC++ V Y ++RD+PA GTS Sbjct: 181 GAIEAGADPLEPFNYPREDIDPSLFPSGEKAAIARLREFCQQAVTDYPDKRDLPASDGTS 240 Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCM 303 +LS YL+ GVLSPRQC +RL ++ L + F WLNELIWREFYRHL+ +P++C Sbjct: 241 RLSVYLATGVLSPRQCLHRLLKQHSGALEDAR--VFVWLNELIWREFYRHLLVAFPALCR 298 Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363 +PF WT ++W + L AW+QG TG+PI+DAAMRQLN++GWMHNRLRMITASFLVK Sbjct: 299 HQPFTRWTRNVKWREAPQHLTAWQQGKTGYPIVDAAMRQLNSLGWMHNRLRMITASFLVK 358 Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423 DLLVDWR GE YFMSQLLDGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG+RFD G Sbjct: 359 DLLVDWREGERYFMSQLLDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGERFDKDGE 418 Query: 424 FIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQ 480 FIR WLPEL +VP +YIH PH W KN +L+YP P+VDHK+A TL+ + AA+K+ Sbjct: 419 FIRRWLPELRDVPAEYIHQPHQWARKNQQTLDYPQPLVDHKQARQQTLDAFEAARKK 475 >gi|308186057|ref|YP_003930188.1| Deoxyribodipyrimidine photolyase [Pantoea vagans C9-1] gi|308056567|gb|ADO08739.1| Deoxyribodipyrimidine photolyase [Pantoea vagans C9-1] Length = 474 Score = 577 bits (1487), Expect = e-162, Method: Compositional matrix adjust. Identities = 277/477 (58%), Positives = 345/477 (72%), Gaps = 5/477 (1%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M+ HLVWLRNDLRI DN AL+AAC +S AKVIA+F+ATPEQW+QH +S RQ+ FI+ASL+ Sbjct: 1 MTTHLVWLRNDLRINDNLALHAACRDSKAKVIALFLATPEQWQQHDMSPRQAAFIHASLV 60 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 +VQ +L+++GI Y C+ F DSI+ L +C + +V +LFYN QYE+NE +RD EKR Sbjct: 61 EVQNALAERGIALHYQACNAFSDSIDALAEFCDKHQVDQLFYNYQYEVNERQRDAEAEKR 120 Query: 127 LQHR-VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185 L VIC+ FDDS+LLPPGS+ + MYKV+TPF KA ++ L Q+ +P P R Sbjct: 121 LDDTGVICQGFDDSLLLPPGSVQSGDRSMYKVFTPFSKAFVRRLQQSLPECVPAPKPRDG 180 Query: 186 GPVTPSNIPRFFDYPFQAIDP-MFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244 P+ + IP F D P +A D +FP GE AL LR F + + Y +RD+PA+ TS+ Sbjct: 181 APLKTTPIPAF-DCPTEAFDEDLFPAGEAAALKRLRHFATQPIIDYPAKRDLPALDATSR 239 Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304 LS YLS GVLSPRQC +R+ E D L S AF+WLNELIWREFYRHL+ YP++C Sbjct: 240 LSVYLSTGVLSPRQCLHRVLHEHPDAL--DNSRAFTWLNELIWREFYRHLLVAYPALCRH 297 Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364 KPFI WT +EW ++ AWK G TG+PI+DAAMRQ+ +GWMHNRLRMITASFLVKD Sbjct: 298 KPFIDWTRNVEWQREDAHFDAWKAGKTGYPIVDAAMRQMKALGWMHNRLRMITASFLVKD 357 Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424 LL+DWR GE YFM QL+DGDLA+NNGGWQWAASTG DS PYFRIFNPT QG+RFD QG F Sbjct: 358 LLIDWREGERYFMQQLIDGDLAANNGGWQWAASTGTDSAPYFRIFNPTTQGERFDEQGEF 417 Query: 425 IRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481 IRH+LPEL +VP +IH PH W +KN+ L+YP PIVDHK A TL+ + AK + Sbjct: 418 IRHYLPELADVPDSHIHQPHVWAEKNNRKLDYPAPIVDHKAARKKTLDAFERAKSAA 474 >gi|153947154|ref|YP_001400093.1| deoxyribodipyrimidine photolyase [Yersinia pseudotuberculosis IP 31758] gi|152958649|gb|ABS46110.1| deoxyribodipyrimidine photolyase [Yersinia pseudotuberculosis IP 31758] Length = 487 Score = 577 bits (1487), Expect = e-162, Method: Compositional matrix adjust. Identities = 278/477 (58%), Positives = 344/477 (72%), Gaps = 4/477 (0%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 MS HLVW RNDLR+TDN AL+AAC + A VIAVFIATP QW H ++ RQ+ F+ +L Sbjct: 1 MSTHLVWFRNDLRVTDNLALHAACQDPQASVIAVFIATPVQWAAHVMAPRQAAFLRQNLQ 60 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 +Q +LS +GI YHQC +F S WL +C QQ+V LFY++QYE+NE RD L + Sbjct: 61 HLQAALSARGIPLHYHQCDDFQASNTWLVDFCQQQQVDSLFYSQQYELNERLRDDALAVQ 120 Query: 127 LQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185 L R I C+SF DSVLL PG++L +MYKV+TPFR+A IQ L+ +D +P P R Sbjct: 121 LSERAITCQSFHDSVLLAPGTVLTGNNEMYKVFTPFRRAFIQRLLMSDNHCVPAPKARHA 180 Query: 186 GPVTPSNIPRFFDYPFQAIDP-MFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244 PV S +P FDYP Q++D +FP GE AL LR+FC+E+V Y + RD+PA+ GTS Sbjct: 181 PPVLLSPLP--FDYPQQSVDSQLFPAGEDAALQRLRRFCREQVQDYRQYRDLPAVPGTSC 238 Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304 LSPYL +GVLSPRQC+NRL E ++L SGAF+WLNELIWREFYRHL+ YP +C Sbjct: 239 LSPYLVLGVLSPRQCFNRLWAESPEMLENADSGAFTWLNELIWREFYRHLLVAYPRLCQH 298 Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364 PFI WT+ + WN+ L+AW+QG TG+PI+DAAMRQ+N GWMHNRLRMI+ASFLVKD Sbjct: 299 HPFIGWTDGLVWNRSESQLKAWQQGQTGYPIVDAAMRQMNETGWMHNRLRMISASFLVKD 358 Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424 LL+DWR GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG+RFD G F Sbjct: 359 LLIDWRQGERYFMSQLVDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGERFDKDGVF 418 Query: 425 IRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481 IR WLPEL VP IH P W ++ L+YP+P+VDHK+A TL + AAK+ S Sbjct: 419 IRRWLPELAAVPDSDIHQPWRWAERQQQHLDYPVPLVDHKQARLATLAAFEAAKRDS 475 >gi|85058846|ref|YP_454548.1| deoxyribodipyrimidine photolyase [Sodalis glossinidius str. 'morsitans'] gi|84779366|dbj|BAE74143.1| deoxyribodipyrimidine photolyase [Sodalis glossinidius str. 'morsitans'] Length = 481 Score = 576 bits (1485), Expect = e-162, Method: Compositional matrix adjust. Identities = 265/475 (55%), Positives = 337/475 (70%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M++HLVWLRNDLR+ DN AL+AAC ++ A+V+AVFIATP+QWR H +S RQ+ FI +L Sbjct: 1 MTIHLVWLRNDLRLHDNTALHAACQDTQARVLAVFIATPQQWRDHDMSPRQAAFIRQNLR 60 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 + + L+ +GI YHQC++F +EWL ++C ++RV KLFYN QYE+NE RD+ LE+R Sbjct: 61 HLAEELAARGIALHYHQCADFAAQVEWLAAFCQRERVDKLFYNYQYELNERERDRRLEQR 120 Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 + + +C+ FDDSVLLPPGS+ QMYKVYTPFR A + L + D LP P+ R Sbjct: 121 IGEKTLCQGFDDSVLLPPGSVHTGNQQMYKVYTPFRNAFLGRLEEQDPACLPAPSPRAGA 180 Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246 P FDYP +P GE AL LR FC +++ Y RDIPA+ TS+LS Sbjct: 181 PCAKVCEIAPFDYPMTPPGEAYPAGEAAALSRLRTFCHQQLQDYHRGRDIPALDATSRLS 240 Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP 306 +L++GVLSPRQC+ RL++ + L ++GAF+WLNELIWR+FYRHL+ +P++C +P Sbjct: 241 AWLAVGVLSPRQCYQRLRKAYPRALTPGQNGAFTWLNELIWRDFYRHLLVAWPALCRYQP 300 Query: 307 FIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLL 366 FIPWT + W +D L AW G TG+PI+DAAMRQL GWMHNRLRMI+ASFLVKDLL Sbjct: 301 FIPWTRHVVWRQDDDLFDAWCAGRTGYPIVDAAMRQLAETGWMHNRLRMISASFLVKDLL 360 Query: 367 VDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIR 426 +DWR GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG+RFD G FIR Sbjct: 361 IDWRRGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGERFDGDGAFIR 420 Query: 427 HWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481 WLP L +VP Y+H P+ W D L+YPLPIVDH KA L+ Y AAK + Sbjct: 421 RWLPALESVPDTYLHQPNRWPDAQRAGLDYPLPIVDHGKARAWALDAYEAAKARG 475 >gi|259909092|ref|YP_002649448.1| deoxyribodipyrimidine photolyase [Erwinia pyrifoliae Ep1/96] gi|224964714|emb|CAX56231.1| Deoxyribodipyrimidine photo-lyase [Erwinia pyrifoliae Ep1/96] Length = 477 Score = 576 bits (1484), Expect = e-162, Method: Compositional matrix adjust. Identities = 276/477 (57%), Positives = 348/477 (72%), Gaps = 5/477 (1%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M+ HLVWLRNDLRI DN ALYAAC + A VIA+FIATP QWR H ++ +Q+ FI+ SL Sbjct: 1 MTTHLVWLRNDLRINDNHALYAACRSEQANVIALFIATPGQWRTHLMAPKQAEFIWQSLQ 60 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 VQ+SL+ +GIV QC +F S+ L +C + RV +LFYN QYE+NE +RD +E+ Sbjct: 61 DVQQSLAARGIVLHVAQCDDFSASVTLLQEFCREHRVNRLFYNYQYEVNERQRDAAVERT 120 Query: 127 LQH-RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185 LQH V+ + FDDS+LLPPGS+L +MYKV+TPF KA ++ L Q LP PA+R Sbjct: 121 LQHDNVVVQGFDDSLLLPPGSVLTGNREMYKVFTPFSKAFVKRLQQGLPECLPAPAVRPG 180 Query: 186 GPVTP-SNIPRFFDYPFQAIDP-MFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS 243 G V + FDYP + ID +FP GE+ A+ LR+FC++ V Y ++R++PA GTS Sbjct: 181 GAVEARAGSLVAFDYPREDIDAGLFPSGEKAAIARLREFCQQAVADYPDKRNLPACDGTS 240 Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCM 303 +LS YL+ GVLSPRQC +RL ++ L S F WLNELIWREFYRHL+ +P++C Sbjct: 241 RLSVYLATGVLSPRQCLHRLLKQHPGAL--EDSRVFVWLNELIWREFYRHLLVAFPALCR 298 Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363 +PF+ WT+ ++W DS L AW+QG TG+PI+DAAMRQLN++GWMHNRLRMITASFLVK Sbjct: 299 HQPFMRWTKSVKWRVDSQQLTAWQQGITGYPIVDAAMRQLNSLGWMHNRLRMITASFLVK 358 Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423 DLL+DWR GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG+RFD G Sbjct: 359 DLLIDWREGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGERFDKDGE 418 Query: 424 FIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQ 480 FIRHWLPEL +VP +YIH PH W KN +L+YP P+VDHK A TL+ + AAK Q Sbjct: 419 FIRHWLPELRHVPPEYIHQPHQWARKNRQTLDYPQPLVDHKLARQQTLDAFEAAKTQ 475 >gi|310767008|gb|ADP11958.1| deoxyribodipyrimidine photolyase (photoreactivation) [Erwinia sp. Ejp617] Length = 477 Score = 575 bits (1483), Expect = e-162, Method: Compositional matrix adjust. Identities = 276/477 (57%), Positives = 348/477 (72%), Gaps = 5/477 (1%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M+ HLVWLRNDLRI DN ALYAAC + A VIA+FIATP QWR H ++ +Q+ FI+ SL Sbjct: 1 MTTHLVWLRNDLRINDNHALYAACRSKQANVIALFIATPGQWRTHLMAPKQAEFIWQSLQ 60 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 VQ+SL+ KGIV QC +F S+ L +C + RV +LFYN QYE+NE +RD +E+ Sbjct: 61 DVQQSLAAKGIVLHVAQCDDFSASVTLLQEFCREHRVNRLFYNYQYEVNERQRDAAVERT 120 Query: 127 LQH-RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185 LQH V+ + FDDS+LLPPGS+L +MYKV+TPF KA ++ L Q LP PA+R Sbjct: 121 LQHDNVVVQGFDDSLLLPPGSVLTGNREMYKVFTPFSKAFVKRLQQGLPECLPAPAVRPG 180 Query: 186 GPVTP-SNIPRFFDYPFQAIDP-MFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS 243 G V ++ DYP + ID +FP GE+ A+ LR+FC++ V Y ++R++PA GTS Sbjct: 181 GAVEARADSLVALDYPREDIDAGLFPSGEKAAIARLREFCQQAVADYPDKRNLPACDGTS 240 Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCM 303 +LS YL+ GVLSPRQC +RL ++ L S F WLNELIWREFYRHL+ +P++C Sbjct: 241 RLSVYLATGVLSPRQCLHRLLKQHPGAL--EDSRVFVWLNELIWREFYRHLLVAFPALCR 298 Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363 +PF+ WT+ ++W DS L AW+QG TG+PI+DAAMRQLN++GWMHNRLRMITASFLVK Sbjct: 299 HQPFMRWTKSVKWRVDSQQLTAWQQGKTGYPIVDAAMRQLNSLGWMHNRLRMITASFLVK 358 Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423 DLL+DWR GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG+RFD G Sbjct: 359 DLLIDWREGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGERFDKDGE 418 Query: 424 FIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQ 480 FIRHWLPEL +VP +YIH PH W KN +L+YP P+VDHK A TL+ + AAK Q Sbjct: 419 FIRHWLPELRHVPPEYIHQPHQWARKNRQTLDYPQPLVDHKLARQQTLDAFEAAKTQ 475 >gi|108808420|ref|YP_652336.1| deoxyribodipyrimidine photolyase [Yersinia pestis Antiqua] gi|167398528|ref|ZP_02304052.1| deoxyribodipyrimidine photolyase [Yersinia pestis biovar Antiqua str. UG05-0454] gi|108780333|gb|ABG14391.1| Deoxyribodipyrimidine photo-lyase type I [Yersinia pestis Antiqua] gi|167051032|gb|EDR62440.1| deoxyribodipyrimidine photolyase [Yersinia pestis biovar Antiqua str. UG05-0454] Length = 485 Score = 575 bits (1482), Expect = e-162, Method: Compositional matrix adjust. Identities = 278/477 (58%), Positives = 345/477 (72%), Gaps = 6/477 (1%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 MS HLVW RNDLR+TDN AL+AAC + A VIAVFIATP QW HG++ RQ+ F+ +L Sbjct: 1 MSTHLVWFRNDLRVTDNLALHAACQDPQASVIAVFIATPVQWAAHGMAPRQAAFLRQNLQ 60 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 +Q +L+ +GI YHQC +F S WL +C QQ+V LFY++QYE+NE RD L + Sbjct: 61 HLQAALAARGIPLHYHQCDDFQASNTWLVDFCQQQQVDSLFYSQQYELNERLRDDALAVQ 120 Query: 127 LQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185 L R I C+SF DSVLL PG++L +MYKV+TPFR+A IQ L+ +D +P P R Sbjct: 121 LSERAITCQSFHDSVLLAPGTVLTGNNEMYKVFTPFRRAFIQRLLMSDNHCVPAPKARHA 180 Query: 186 GPVTPSNIPRFFDYPFQAIDP-MFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244 PV S +P FDYP Q++D +FP GE AL LR+FC+E+V Y + RD+PA+ GTS Sbjct: 181 PPVLLSPLP--FDYPQQSVDSQLFPAGEDAALQRLRRFCREQVQDYRQYRDLPAVPGTSC 238 Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304 LSPYL +GVLSPRQC+NRL E ++L SGAF+WLNELIWREFYRHL+ YP +C Sbjct: 239 LSPYLVLGVLSPRQCFNRLWAESPEMLENADSGAFTWLNELIWREFYRHLLVAYPRLCQH 298 Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364 PFI WT+ + WN+ L+AW+QG TG+PI+DAAMRQ+N GWMHNRLRMI+ASFLVKD Sbjct: 299 HPFIGWTDGLVWNRSESQLKAWQQGQTGYPIVDAAMRQMNETGWMHNRLRMISASFLVKD 358 Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424 LL+DWR GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG+RFD G F Sbjct: 359 LLIDWRQGERYFMSQLVDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGERFDKDGVF 418 Query: 425 IRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481 IR WLPEL VP IH P W ++ L+YP+P+VDHK+A TL + AAK+ S Sbjct: 419 IRRWLPELAAVPDSDIHQPWRWAERQ--HLDYPVPLVDHKQARLATLAAFEAAKRDS 473 >gi|317491170|ref|ZP_07949606.1| DNA photolyase [Enterobacteriaceae bacterium 9_2_54FAA] gi|316920717|gb|EFV42040.1| DNA photolyase [Enterobacteriaceae bacterium 9_2_54FAA] Length = 476 Score = 573 bits (1478), Expect = e-161, Method: Compositional matrix adjust. Identities = 273/475 (57%), Positives = 340/475 (71%), Gaps = 3/475 (0%) Query: 8 SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67 + H+VW RNDLRITDN+AL+AAC + AKVIAV+IATPEQW+QH ++ RQ+ FI+ +L Sbjct: 3 ATHVVWFRNDLRITDNRALHAACQDPQAKVIAVYIATPEQWKQHDMAPRQAAFIHQNLQC 62 Query: 68 VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127 + +L+ K I YHQC++F S +WL +C + VT LFYNRQYE+NE RRD + + L Sbjct: 63 LVHALAGKNIPLFYHQCTDFTASAKWLVDFCQKNEVTDLFYNRQYELNERRRDDAVTELL 122 Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187 SFDD++LLPPGS++ + +MYKV+TPFR A +Q L +D+RSLP P R Sbjct: 123 AGVCGIHSFDDALLLPPGSVVTGSGEMYKVFTPFRNAFLQRLTHSDVRSLPAPKTREQAC 182 Query: 188 VTPSNIPRFFDYPFQAIDP-MFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246 P FDY Q +D +FP GE+ AL LR FC+E V Y +QRDIPA+ GTS LS Sbjct: 183 EMSEIKP--FDYSQQGLDSVLFPAGEEAALQRLRVFCREHVQDYAQQRDIPAVDGTSVLS 240 Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP 306 PYL++GVLSPRQC NRL E D L +SGAF WLNEL+WREFYRHL+ +P +C KP Sbjct: 241 PYLAVGVLSPRQCLNRLLAECPDTLEDGESGAFVWLNELVWREFYRHLLVAHPKLCRHKP 300 Query: 307 FIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLL 366 FI WT+ + W+ D L AW+QG TG+PI+DAAMRQLN GWMHNRLRMI ASFLVKDLL Sbjct: 301 FIAWTDHVHWSGDIEHLTAWQQGETGYPIVDAAMRQLNHTGWMHNRLRMIVASFLVKDLL 360 Query: 367 VDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIR 426 ++WR GE YFMSQL+DGDLA+NNGGWQWAAS+G D+ PYFRIFNPT QG+RFD +G FIR Sbjct: 361 INWRAGERYFMSQLIDGDLAANNGGWQWAASSGTDAAPYFRIFNPTTQGERFDKKGDFIR 420 Query: 427 HWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481 WLPEL +VP IH PH W K L+YP P+VDH A TL + AK+++ Sbjct: 421 RWLPELADVPDSDIHHPHQWAMKQCRVLDYPQPLVDHALARKQTLQAFEDAKRRA 475 >gi|329296060|ref|ZP_08253396.1| deoxyribodipyrimidine photolyase [Plautia stali symbiont] Length = 477 Score = 572 bits (1475), Expect = e-161, Method: Compositional matrix adjust. Identities = 270/476 (56%), Positives = 343/476 (72%), Gaps = 6/476 (1%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 MS HLVWLRNDLRI DN AL AAC S A+V+A+FIATP QW+QH ++ +Q+ FI+ +L Sbjct: 1 MSTHLVWLRNDLRINDNSALAAACRESQAEVLALFIATPGQWQQHSMAPKQAAFIHQNLC 60 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 +Q+SL+++GI +HQC +F S+++L ++C Q +V LFYN QYEINE +RD +EK+ Sbjct: 61 LLQQSLAERGIKLHFHQCDDFAASVDYLATFCQQHKVDALFYNYQYEINERQRDAAVEKQ 120 Query: 127 L-QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185 L Q V+C+ FDDS+LLPPGS+ + M+KV+TPF KA I+ L Q P R Sbjct: 121 LDQQSVVCQGFDDSLLLPPGSVQTGSNSMFKVFTPFSKAFIRRLQQGLPECHHAPKARAR 180 Query: 186 GPVTPSNIPRFFDYPFQAIDPM-FPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244 PV FDYP + D FP GE+ AL LR+F +++V Y +QRDIPAI GTS+ Sbjct: 181 APVAAGKKIAAFDYPLEEFDETWFPAGEEAALKQLRQFVQQRVEKYDQQRDIPAIDGTSR 240 Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304 LSPYL+IGVLSPRQC +R+ +E L A WLNEL+WREFYRHLM +P++C Sbjct: 241 LSPYLAIGVLSPRQCLHRILKEHPQAL--NNGSALVWLNELVWREFYRHLMVTFPALCKH 298 Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364 +PF+ WT + W ++ L AW+QG TG+PI+DAAMRQLNT+GWMHNRLRMITASFLVKD Sbjct: 299 QPFVDWTRNVSWQQNEQYLTAWQQGKTGYPIVDAAMRQLNTLGWMHNRLRMITASFLVKD 358 Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAAS--TGNDSVPYFRIFNPTIQGKRFDPQG 422 LL+DWR GE YFM QL+DGDLA+NNGGWQWAAS TG D+ PYFRIFNPT QG+RFD QG Sbjct: 359 LLIDWREGERYFMQQLIDGDLAANNGGWQWAASTGTGTDAAPYFRIFNPTTQGERFDKQG 418 Query: 423 TFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478 FIR WLPEL +VP IH PH+W +KN+ L+YP PIV+HK A TL+ + A+ Sbjct: 419 EFIRRWLPELQDVPDSAIHQPHAWAEKNNKKLDYPAPIVEHKAARKKTLDAFERAR 474 >gi|238790472|ref|ZP_04634241.1| Deoxyribodipyrimidine photo-lyase [Yersinia frederiksenii ATCC 33641] gi|238721416|gb|EEQ13087.1| Deoxyribodipyrimidine photo-lyase [Yersinia frederiksenii ATCC 33641] Length = 481 Score = 571 bits (1472), Expect = e-161, Method: Compositional matrix adjust. Identities = 280/481 (58%), Positives = 341/481 (70%), Gaps = 14/481 (2%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M+ HLVW RNDLR+TDN AL+AAC + A VIAVF+ATP QW H ++ RQ+ F+ +L Sbjct: 1 MATHLVWFRNDLRLTDNLALHAACQDPQATVIAVFVATPTQWATHDMAPRQAAFLLQNLQ 60 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 Q+Q +L+ + I YHQC +F SI+WLD +C Q +V LFYN+QYE+NE RD L R Sbjct: 61 QLQTALAARAIPLHYHQCDDFQGSIDWLDDFCQQHQVNVLFYNQQYELNEQLRDNALVAR 120 Query: 127 LQHR-VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIR-- 183 L R + C SF DSVLLPPGS+L +MYKV+TPFR+A IQ L+ +D S+P P R Sbjct: 121 LNGRDIACNSFHDSVLLPPGSVLTGNNEMYKVFTPFRRAFIQRLIMSDCGSVPAPKARSA 180 Query: 184 ----LTGPVTPSNIPRFFDYPFQAIDP-MFPIGEQNALHILRKFCKEKVYYYVEQRDIPA 238 + P+TP FDYP Q +D +FP GE+ AL LR FC+E+V Y +QRD PA Sbjct: 181 SMEIVPQPLTP------FDYPQQPLDNVLFPAGEEAALQRLRTFCREQVQDYQQQRDFPA 234 Query: 239 IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFY 298 I TS LSPYL++G+LSPRQC NRL+ E ++L GAF WLNELIWREFYRHL+ Y Sbjct: 235 IAATSCLSPYLALGILSPRQCVNRLRAECPEVLENADGGAFIWLNELIWREFYRHLLVAY 294 Query: 299 PSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITA 358 P +C +PFI WT+ + WN L AW+QG TG+PI+DAAMRQLN GWMHNRLRMI+A Sbjct: 295 PRLCQHRPFIGWTDAVVWNHSQQQLIAWQQGQTGYPIVDAAMRQLNETGWMHNRLRMISA 354 Query: 359 SFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRF 418 SFLVKDLL+DWR GE YFMSQLLDGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG+RF Sbjct: 355 SFLVKDLLIDWRQGERYFMSQLLDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGERF 414 Query: 419 DPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478 D G FIR WLPEL VP IH P +W + L+YPLP+VDHK A TL + AAK Sbjct: 415 DKDGVFIRRWLPELAMVPDSDIHQPWNWAQRQQQPLDYPLPLVDHKAARLATLAAFDAAK 474 Query: 479 K 479 + Sbjct: 475 R 475 >gi|304395693|ref|ZP_07377576.1| Deoxyribodipyrimidine photo-lyase [Pantoea sp. aB] gi|304356987|gb|EFM21351.1| Deoxyribodipyrimidine photo-lyase [Pantoea sp. aB] Length = 474 Score = 570 bits (1469), Expect = e-160, Method: Compositional matrix adjust. Identities = 274/477 (57%), Positives = 345/477 (72%), Gaps = 5/477 (1%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M+ HLVWLRNDLRI DN AL+AAC +SDAKVIA++++TPEQW+QH +S +Q+ FI+ASLL Sbjct: 1 MTTHLVWLRNDLRINDNLALHAACRDSDAKVIALYLSTPEQWQQHDMSPKQAAFIHASLL 60 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 +VQ +L+++GI Y C F DSI+ L +C +Q+V +LFYN QYE+NE +RD EKR Sbjct: 61 EVQSALAERGIPLHYQACHAFSDSIDALAEFCEKQKVDQLFYNYQYEVNERQRDARAEKR 120 Query: 127 LQHR-VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185 L VIC+ FDDS+LLPPGS+ + MYKV+TPF KA ++ L Q+ +P P R Sbjct: 121 LDDAGVICQGFDDSLLLPPGSVQSGDRSMYKVFTPFSKAFVRRLQQSLPECVPAPKPREG 180 Query: 186 GPVTPSNIPRFFDYPFQAIDP-MFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244 P+ + IP F DYP +A D +FP GE AL LR F + V Y +RD+PA+ TS+ Sbjct: 181 SPLKVTPIPAF-DYPTKAFDEDLFPAGEAAALKRLRHFATKPVIDYPAKRDLPALDATSR 239 Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304 LS YL+ GVLSPRQC +R+ E D L S AF+WLNELIWREFYRHL+ YP++C Sbjct: 240 LSVYLATGVLSPRQCLHRVLHEHPDAL--DNSRAFTWLNELIWREFYRHLLVAYPALCRH 297 Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364 +PFI WT +EW ++ AWK G TG+PI+DAAMRQ+ +GWMHNRLRMITASFLVKD Sbjct: 298 QPFIDWTRNVEWQRNDAHFDAWKAGRTGYPIVDAAMRQMKALGWMHNRLRMITASFLVKD 357 Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424 LL+DWR GE YFM QL+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG+RFD +G F Sbjct: 358 LLIDWREGERYFMQQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGERFDEKGDF 417 Query: 425 IRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481 IRH+LPEL +VP IH PH W +K+ L+YP PIVDHK A TL+ + AK + Sbjct: 418 IRHYLPELADVPDSDIHQPHVWAEKHHKKLDYPAPIVDHKAARKKTLDAFERAKSAA 474 >gi|261344548|ref|ZP_05972192.1| deoxyribodipyrimidine photolyase [Providencia rustigianii DSM 4541] gi|282567462|gb|EFB72997.1| deoxyribodipyrimidine photolyase [Providencia rustigianii DSM 4541] Length = 478 Score = 570 bits (1468), Expect = e-160, Method: Compositional matrix adjust. Identities = 268/473 (56%), Positives = 340/473 (71%), Gaps = 2/473 (0%) Query: 10 HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69 HLVW R DLR+TDNKAL +AC +SD++VI VFIATP+QW HG+S RQ F++ +L+++Q Sbjct: 5 HLVWFRGDLRVTDNKALSSACQDSDSQVIGVFIATPDQWASHGVSPRQITFMHQNLIELQ 64 Query: 70 KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH 129 ++L+++GI H S F DS +WL Y QQ+V LF+N+QYE+NE +RD+ + + Q Sbjct: 65 RALAERGIPLVCHTVSTFADSAKWLLEYAKQQQVKALFFNQQYELNERQRDQWVTQHAQS 124 Query: 130 RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189 + S+DD+VL+ PG + +MY+VYTPFR+A + L+ D RSLP P R + P+ Sbjct: 125 LNVF-SYDDAVLISPGVVQTQKGEMYQVYTPFRRAFLSQLMMTDYRSLPAPKPR-SEPII 182 Query: 190 PSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYL 249 N F + I P F GEQ AL LR FC+E+V Y RDIP+I GTSQLSPYL Sbjct: 183 IDNSQPLFPHTPVEIAPQFIAGEQAALAKLRLFCRERVQDYQRDRDIPSIDGTSQLSPYL 242 Query: 250 SIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIP 309 +IG LSPRQC NRL E + P SG FSWLNEL+WREFY HL+ +P +C +PFI Sbjct: 243 AIGTLSPRQCVNRLLAENPHIFDSPDSGGFSWLNELVWREFYSHLLVAFPRLCRHQPFIE 302 Query: 310 WTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDW 369 WT+ I+WN D AWK G TG+PI+DAAMRQLN GWMHNRLRMI ASFLVKDLL+DW Sbjct: 303 WTQHIQWNPDEDAFTAWKTGQTGYPIVDAAMRQLNQTGWMHNRLRMIVASFLVKDLLIDW 362 Query: 370 RIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWL 429 R GE YF+SQL+DG LA+NNGGWQW+ASTG D+ P+FRIFNPT QGK+FDPQGTFI WL Sbjct: 363 RKGEHYFISQLIDGTLAANNGGWQWSASTGVDASPWFRIFNPTTQGKKFDPQGTFIHKWL 422 Query: 430 PELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQSL 482 PEL NVP Q+IH PH+W + N ++LNYP PIVDHK+A +TL + A K+ S+ Sbjct: 423 PELRNVPEQFIHEPHTWAESNQVTLNYPTPIVDHKQARLNTLEAFEAGKRGSM 475 >gi|300715863|ref|YP_003740666.1| deoxyribodipyrimidine photo-lyase [Erwinia billingiae Eb661] gi|299061699|emb|CAX58815.1| Deoxyribodipyrimidine photo-lyase [Erwinia billingiae Eb661] Length = 475 Score = 566 bits (1458), Expect = e-159, Method: Compositional matrix adjust. Identities = 267/477 (55%), Positives = 345/477 (72%), Gaps = 4/477 (0%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M+ HL+WLRNDLR+ DN AL+AAC ++DA V+A+FIATP QW+ H ++ +Q+ FIY +LL Sbjct: 1 MATHLIWLRNDLRVHDNYALHAACRDADATVLALFIATPAQWKSHSMAPKQAAFIYQNLL 60 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 VQ SL++KGI QC +F S+E L +C Q V +LFYN QYE+NE +RD E+R Sbjct: 61 DVQHSLAEKGIALHTVQCDDFAASVEALSDFCQQHHVDRLFYNYQYEVNERQRDAAAERR 120 Query: 127 L-QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185 L +I + FDDS+LLPPGS+L +MYKV+TPF +A ++ L + +P P R Sbjct: 121 LFDLDIISQGFDDSLLLPPGSVLTGNREMYKVFTPFSRAFVKRLHEGLPECVPAPKPRQG 180 Query: 186 GPVTPSNIPRFFDYPFQAIDP-MFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244 P++ + + FDYP +A D +F GE+ ALH LR FC++ V Y + R+IPA+ GTS+ Sbjct: 181 APLSKTPEIKPFDYPTEAFDSELFAAGEKAALHQLRHFCQQPVTEYPDTRNIPAVDGTSR 240 Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304 LS YL+ GVLSPRQC +RL E L S F WLNELIWREFYRHL+ +P +C Sbjct: 241 LSVYLATGVLSPRQCLHRLLAEHPRGL--DDSNVFVWLNELIWREFYRHLLVAWPKLCRY 298 Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364 KPFI WT+ ++W L+AW+QG TG+PI+DAAMRQ+N +GWMHNRLRMI ASFLVKD Sbjct: 299 KPFIAWTDNVKWQPADKQLEAWQQGKTGYPIVDAAMRQMNQLGWMHNRLRMIVASFLVKD 358 Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424 LL+DWR GE YFMSQL+DGDLA+NNGGWQWAAS+GND+ PYFRIFNPT QG+RFD +G F Sbjct: 359 LLIDWREGERYFMSQLIDGDLAANNGGWQWAASSGNDAAPYFRIFNPTTQGERFDKEGEF 418 Query: 425 IRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481 IR WLPEL +VP ++IH PH W D ++L+YP P+VDHK+A TL + AA+KQS Sbjct: 419 IRKWLPELKDVPVKHIHQPHIWADNVGVALDYPQPVVDHKEARKRTLEAFEAARKQS 475 >gi|212711667|ref|ZP_03319795.1| hypothetical protein PROVALCAL_02742 [Providencia alcalifaciens DSM 30120] gi|212685769|gb|EEB45297.1| hypothetical protein PROVALCAL_02742 [Providencia alcalifaciens DSM 30120] Length = 477 Score = 564 bits (1454), Expect = e-158, Method: Compositional matrix adjust. Identities = 269/477 (56%), Positives = 338/477 (70%), Gaps = 3/477 (0%) Query: 7 MSV-HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASL 65 MSV HLVW RNDLR+TDNKAL AC + A VI V+IATPEQW H +S RQ F++ +L Sbjct: 1 MSVCHLVWFRNDLRVTDNKALTFACEDPTATVIGVYIATPEQWATHNVSPRQIAFLHQNL 60 Query: 66 LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125 +++Q +L+++GI H + F DS++WL + QQ T L++N QYE+NE RD+ L + Sbjct: 61 VELQHALAKRGIPLICHTAATFADSVKWLLDFAQQQNATGLYFNHQYELNERLRDEQLRQ 120 Query: 126 RLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185 + QH I ++DD++LLPPGS+ MY+VYTPFR+A + L+ +D RS P P R Sbjct: 121 QSQHLNIL-TYDDALLLPPGSVTTQKGDMYQVYTPFRRAFLSQLMMSDFRSFPAPKPRGA 179 Query: 186 GPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245 + P F + P F GE AL LR+FC E+V Y RDIPAI GTSQL Sbjct: 180 ALAVENTHPLFVHQSVET-SPQFIAGEHAALAKLRQFCSERVQDYQRDRDIPAINGTSQL 238 Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305 SPYL++GVLSPRQC NRL E + +SG FSWLNELIWREFY HL+ +P +C + Sbjct: 239 SPYLALGVLSPRQCVNRLLAENPQVFDSQESGGFSWLNELIWREFYSHLLVAFPRLCRHQ 298 Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365 PFI WT+ I+WN D + AWK G TG+PI+DAAMRQLN GWMHNRLRMI ASFLVKDL Sbjct: 299 PFIKWTQHIQWNPDDAIFSAWKSGQTGYPIVDAAMRQLNQTGWMHNRLRMIVASFLVKDL 358 Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425 LVDWR GE YFMSQL+DG LA+NNGGWQW+ASTG D+ P+FRIFNPT QGK+FDPQGTFI Sbjct: 359 LVDWRKGEHYFMSQLIDGTLAANNGGWQWSASTGVDASPWFRIFNPTTQGKKFDPQGTFI 418 Query: 426 RHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQSL 482 R WLPEL +VP ++IH PH+W + + +SLNYP PIVDHK+A TL + A K++S+ Sbjct: 419 REWLPELRDVPEKFIHEPHTWAESHQVSLNYPTPIVDHKQARLMTLEAFEAGKRKSI 475 >gi|183596981|ref|ZP_02958474.1| hypothetical protein PROSTU_00210 [Providencia stuartii ATCC 25827] gi|188023634|gb|EDU61674.1| hypothetical protein PROSTU_00210 [Providencia stuartii ATCC 25827] Length = 483 Score = 558 bits (1437), Expect = e-156, Method: Compositional matrix adjust. Identities = 265/476 (55%), Positives = 338/476 (71%), Gaps = 2/476 (0%) Query: 8 SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67 + HLVW RNDLR+TDNKAL +AC + DAKV+AVF ATPEQWR H +S+RQ F++ +L+ Sbjct: 6 ACHLVWFRNDLRVTDNKALSSACADPDAKVLAVFTATPEQWRAHHLSSRQITFLHQNLIA 65 Query: 68 VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127 ++ SL++ I +F + +W+ + QQ+V L++N QYE+NE RRD+ L Sbjct: 66 LRDSLAKLSIPLFCQTTPDFLSAAQWVLDFAQQQQVDHLYFNHQYELNEHRRDEWLIHHP 125 Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG- 186 Q +FDD++LLPP S+ N +MY+VYTPFR+A I LV D RSLP P R Sbjct: 126 QRAFRVHAFDDALLLPPKSVTNQKGEMYQVYTPFRRAFISQLVTTDFRSLPAPQPRGEAL 185 Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246 + ++P F + + P FP GE A LR+FC+ KV +Y + RDIP+I+GTS LS Sbjct: 186 AIDDLSLPLFAHHAVDIV-PHFPAGESAARQQLRQFCRLKVQHYQQHRDIPSIEGTSLLS 244 Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP 306 PYL+IGVLSPRQC NRL E+ L P SGAF+WLNELIWREFY HL+ +P +C +P Sbjct: 245 PYLAIGVLSPRQCLNRLLAEYPPLFDSPDSGAFTWLNELIWREFYHHLLVAFPRLCRHQP 304 Query: 307 FIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLL 366 FI WT I+WN +AW+ G TG+PI+DAAMRQLNT GWMHNRLRMITASFLVKDLL Sbjct: 305 FIEWTNHIQWNSSDADFKAWQLGQTGYPIVDAAMRQLNTTGWMHNRLRMITASFLVKDLL 364 Query: 367 VDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIR 426 +DWR+GE+YFM QL+DG LA+NNGGWQW+ASTG D+ P+FRIFNPT QGK+FDPQG FIR Sbjct: 365 IDWRLGEQYFMQQLIDGTLAANNGGWQWSASTGTDAQPWFRIFNPTTQGKKFDPQGAFIR 424 Query: 427 HWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQSL 482 WLPEL +VP +YIH PH W + N ++L+YP PIVDHK+A TL + A K S+ Sbjct: 425 QWLPELQSVPDKYIHTPHEWAEANHVTLDYPAPIVDHKQARLATLAAFEAGKSDSV 480 >gi|327393138|dbj|BAK10560.1| deoxyribodipyrimidine photo-lyase PhrB [Pantoea ananatis AJ13355] Length = 475 Score = 556 bits (1434), Expect = e-156, Method: Compositional matrix adjust. Identities = 272/475 (57%), Positives = 338/475 (71%), Gaps = 6/475 (1%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M+ HLVWLRNDLRI DN AL+AAC DA+VIA+FIATP QW+QH ++ARQ FI+ SL Sbjct: 1 MTTHLVWLRNDLRINDNLALHAACTQPDARVIALFIATPGQWQQHEMAARQVAFIHQSLD 60 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 +Q SL+++G +HQC +F SI++L +C +Q+V KLFYN QYE+NE RD EKR Sbjct: 61 MLQSSLAERGFPLHFHQCDDFAASIDFLVGFCQKQQVDKLFYNYQYEVNERERDASAEKR 120 Query: 127 L-QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185 L + V+C+ FDDS+LLPPGSI +MYKV+TPF KA ++ L Q +P P R Sbjct: 121 LHEANVVCQGFDDSLLLPPGSIQTGDGEMYKVFTPFSKAFLRRLQQGLPECVPAPKAREG 180 Query: 186 GPV-TPSNIPRFFDYPFQAID-PMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS 243 P+ P ++P F DYP ID +FP GEQ A+ LR+F K+ V Y +QRD+PA+ TS Sbjct: 181 APLKEPKSLPPF-DYPKADIDTSLFPPGEQAAVKRLREFAKQAVLDYAKQRDLPALDSTS 239 Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCM 303 +LS YLS GVLSPRQC +R+ E L S A W+NELIWREFYRHL+ +P +C Sbjct: 240 RLSVYLSTGVLSPRQCLHRILHEQPKAL--ESSPAAVWINELIWREFYRHLIVAHPRLCK 297 Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363 +PF+ WT + W ++S AWK G TG+PI+DAAMRQ+ TIGWMHNRLRMITASFLVK Sbjct: 298 HQPFVHWTRNVAWQRNSAHFDAWKAGKTGYPIVDAAMRQMQTIGWMHNRLRMITASFLVK 357 Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423 DLL+DWR GE YFM QL+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG+RFD +G Sbjct: 358 DLLIDWREGERYFMQQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGERFDKEGE 417 Query: 424 FIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478 FIR +LPEL VP IH PH W KN+ L+YP PIV+HK A TL+ + AK Sbjct: 418 FIRRYLPELKEVPDSDIHQPHQWAQKNNKKLDYPAPIVEHKDARKKTLDAFERAK 472 >gi|291616713|ref|YP_003519455.1| PhrB [Pantoea ananatis LMG 20103] gi|291151743|gb|ADD76327.1| PhrB [Pantoea ananatis LMG 20103] Length = 475 Score = 555 bits (1429), Expect = e-156, Method: Compositional matrix adjust. Identities = 273/476 (57%), Positives = 340/476 (71%), Gaps = 8/476 (1%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M+ HLVWLRNDLRI DN AL+AAC DA+VIA+FIATP QW+QH ++ARQ FI+ SL Sbjct: 1 MTTHLVWLRNDLRINDNLALHAACTQPDARVIALFIATPGQWQQHEMAARQVAFIHQSLD 60 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 +Q SL+++GI +HQC +F SI++L +C +Q+V KLFYN QYE+NE RD EKR Sbjct: 61 MLQSSLAERGIPLHFHQCDDFAASIDFLVGFCQKQQVDKLFYNYQYEVNERERDASAEKR 120 Query: 127 L-QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185 L + V+C+ FDDS+LLPPGSI +MYKV+TPF KA ++ L Q +P P R Sbjct: 121 LHEANVVCQGFDDSLLLPPGSIQTGDGEMYKVFTPFSKAFLRRLQQGLPECVPAPKAREG 180 Query: 186 GPVT-PSNIPRFFDYPFQAID-PMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS 243 P+ P ++P F DYP ID +FP GEQ A+ LR+F K+ V Y +QRD+PA+ TS Sbjct: 181 TPLKEPKSLPPF-DYPKADIDTSLFPPGEQAAVKRLREFAKQAVLDYAKQRDLPALDSTS 239 Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSG-AFSWLNELIWREFYRHLMAFYPSVC 302 +LS YLS GVLSPRQC +R+ E L SG A W+NELIWREFYRHL+ +P +C Sbjct: 240 RLSVYLSTGVLSPRQCLHRILHEQPKAL---DSGPAAVWINELIWREFYRHLIVAHPRLC 296 Query: 303 MGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLV 362 +PF+ WT + W ++S AWK G TG+PI+DAAMRQ+ TIGWMHNRLRMITASFLV Sbjct: 297 KHQPFVHWTRNVAWQRNSAHFDAWKAGKTGYPIVDAAMRQMQTIGWMHNRLRMITASFLV 356 Query: 363 KDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQG 422 KDLL+DWR GE YF+ QL+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG+RFD +G Sbjct: 357 KDLLIDWREGERYFIQQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGERFDKEG 416 Query: 423 TFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478 FIR +LPEL VP IH PH W KN+ L+YP PIV+HK A TL+ + AK Sbjct: 417 EFIRRYLPELKEVPDSDIHQPHQWAQKNNKKLDYPAPIVEHKDARKKTLDAFERAK 472 >gi|268592334|ref|ZP_06126555.1| deoxyribodipyrimidine photolyase [Providencia rettgeri DSM 1131] gi|291312119|gb|EFE52572.1| deoxyribodipyrimidine photolyase [Providencia rettgeri DSM 1131] Length = 480 Score = 552 bits (1422), Expect = e-155, Method: Compositional matrix adjust. Identities = 266/473 (56%), Positives = 335/473 (70%), Gaps = 2/473 (0%) Query: 10 HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69 HL+W RNDLR+TDNKAL +AC + +AKVIA+F ATP+QW+QH ++ RQ FI+ +L+++Q Sbjct: 8 HLIWFRNDLRVTDNKALSSACADPNAKVIALFTATPKQWQQHDMAERQISFIHQNLVELQ 67 Query: 70 KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH 129 SL++ GI ++F D+ +W+ Y Q+ LF+NRQYE NE +RD+ L + H Sbjct: 68 NSLAELGIPLVCQTVNHFTDAAQWVLDYAKTQQADALFFNRQYEWNEKQRDEWLINQ-PH 126 Query: 130 RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189 + +FDD +LLPPGS+ +MY+VYTPFR+A + L D RSL P R Sbjct: 127 GLHIHAFDDYLLLPPGSVTTQKGEMYQVYTPFRRAFLTQLTVTDCRSLRAPEKRAAAINI 186 Query: 190 PSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYL 249 +P F P + FP GE++AL LR+FC KV Y RDIP+I GTSQLSPYL Sbjct: 187 DKALPLFPHQPIEDFQ-QFPAGEKSALTRLRQFCSLKVGDYQNDRDIPSIDGTSQLSPYL 245 Query: 250 SIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIP 309 ++GVLSPRQC+NRL+ E +L P SGAF+WLNEL+WREFY HL+ +P +C +PFI Sbjct: 246 AVGVLSPRQCFNRLQAENPQVLDHPDSGAFTWLNELVWREFYSHLLVAFPRLCRHQPFIQ 305 Query: 310 WTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDW 369 WT+ I WN S AWK G TG+PI+DAAMRQLNT GWMHNRLRMI ASFLVKDLL+DW Sbjct: 306 WTQHIHWNDSSTDFAAWKTGQTGYPIVDAAMRQLNTTGWMHNRLRMIVASFLVKDLLIDW 365 Query: 370 RIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWL 429 R GE+YFMSQLLDG LA+NNGGWQW+ASTG D+ P+FRIFNPT QGK+FD QG FIRHWL Sbjct: 366 RKGEKYFMSQLLDGSLAANNGGWQWSASTGVDASPWFRIFNPTTQGKKFDAQGAFIRHWL 425 Query: 430 PELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQSL 482 PEL VP +YIH PH W ++ +LNYP PIVDHK+A TL + A K+ SL Sbjct: 426 PELQQVPDKYIHTPHEWAVISNTALNYPEPIVDHKQARLATLAAFEAGKRNSL 478 >gi|317047331|ref|YP_004114979.1| deoxyribodipyrimidine photo-lyase [Pantoea sp. At-9b] gi|316948948|gb|ADU68423.1| Deoxyribodipyrimidine photo-lyase [Pantoea sp. At-9b] Length = 475 Score = 551 bits (1421), Expect = e-155, Method: Compositional matrix adjust. Identities = 264/477 (55%), Positives = 333/477 (69%), Gaps = 4/477 (0%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M+ HLVWLRNDLRI DN AL+AAC + A+V+A+FIATP QW+QH ++ +Q+ FIY SL Sbjct: 1 MTTHLVWLRNDLRINDNSALHAACRDPGARVLALFIATPGQWQQHHMAPKQAAFIYQSLC 60 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 +Q +L+++GI Y QC +F S+E L +C QQ+V +LFYN QYEINE +RD EKR Sbjct: 61 LLQAALAERGIPLHYQQCDDFAASLEVLADFCQQQQVDQLFYNYQYEINERQRDAAAEKR 120 Query: 127 LQHR-VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185 L + VIC+ FDDS+LL PGS+ M+KV+TPF KA ++ L Q P R Sbjct: 121 LDDQGVICQGFDDSLLLAPGSVQTGNHTMFKVFTPFSKAFVRRLHQGLPECHMAPRARQG 180 Query: 186 GPVTPSNIPRFFDYPFQAID-PMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244 P+ FDYP + D +FP GE+ AL LR F ++ V Y +RD PA+ GTS+ Sbjct: 181 APINVEKKIPPFDYPMEDFDVTLFPAGEEAALQQLRHFAQQSVVDYAAERDKPAVDGTSR 240 Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304 LS YL+ GVLSPRQC +R+ ++ D L AF WLNELIWREFYRHLM +P++C Sbjct: 241 LSVYLATGVLSPRQCLHRILKQHPDAL--DGGLAFVWLNELIWREFYRHLMVAFPALCKH 298 Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364 +PF+ WT + W K+ L AW+QG TG+PI+DAAMRQLN +GWMHNRLRMI A FLVKD Sbjct: 299 QPFVGWTRHVRWQKNQRHLTAWQQGKTGYPIVDAAMRQLNALGWMHNRLRMIVACFLVKD 358 Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424 LL+DW GE YFM QL+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG+RFDPQG F Sbjct: 359 LLIDWHDGERYFMQQLMDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGERFDPQGAF 418 Query: 425 IRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481 IR WLPEL VP +IH PH W KN+++L YP PIV+HK A TL+ + A+ + Sbjct: 419 IRQWLPELAVVPDAHIHQPHVWAQKNNMTLAYPAPIVEHKDARKKTLDAFERARSAA 475 >gi|261341301|ref|ZP_05969159.1| deoxyribodipyrimidine photolyase [Enterobacter cancerogenus ATCC 35316] gi|288316605|gb|EFC55543.1| deoxyribodipyrimidine photolyase [Enterobacter cancerogenus ATCC 35316] Length = 470 Score = 548 bits (1413), Expect = e-154, Method: Compositional matrix adjust. Identities = 266/474 (56%), Positives = 341/474 (71%), Gaps = 8/474 (1%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M HLVW R DLR+ DN AL AAC DA+V+A+FIATPEQW+QH ++ RQ+ ++ A L Sbjct: 1 MPTHLVWFRADLRVHDNIALAAACRAKDARVLALFIATPEQWQQHDMAPRQAAYLCAHLN 60 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 ++Q+SL +KGI Y + S+F ++ + + C + VT LFYN QYE NE +RD+ LE R Sbjct: 61 ELQRSLGEKGIPLIYKEVSDFSAQLQAVQAICDEHDVTHLFYNYQYEFNEQQRDRQLENR 120 Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 L V+C+ FDDSV+LPPGS++ +MYKV+TPF+ A I+ L +A + PA R Sbjct: 121 LD-TVVCQGFDDSVMLPPGSVMTGNHEMYKVFTPFKNAFIKRLKEALPECVAAPAAR-GE 178 Query: 187 PVTPSNIPRF-FDYPFQAIDP-MFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244 P+T ++P FDYP QA D +FP E+ A+ LR FCK+ Y QRD PA++GTS+ Sbjct: 179 PLT--DLPALTFDYPQQAFDETLFPADEKAAITQLRHFCKQGAAEYESQRDFPAVEGTSR 236 Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304 LS L++GVLSPRQC +RL E L +GA WLNEL WREFYRHLM ++P +C Sbjct: 237 LSACLALGVLSPRQCLHRLLAEQPQAL-DGAAGAV-WLNELTWREFYRHLMTYHPDLCKH 294 Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364 +PFI WTE ++W ++ L+AW+ G TG+PI+DAAMRQLN GWMHNRLRMITASFLVKD Sbjct: 295 RPFIRWTENVKWQQNDDRLRAWQNGTTGYPIVDAAMRQLNATGWMHNRLRMITASFLVKD 354 Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424 LL+DWR+GE YF+SQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG+RFD G F Sbjct: 355 LLIDWRVGERYFISQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGQRFDADGEF 414 Query: 425 IRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478 IRHWLPELN VP + IH P +W DK ++L+YP P+VDHK+A TL Y AA+ Sbjct: 415 IRHWLPELNEVPAKAIHEPWTWADKQGVTLDYPRPLVDHKQARVATLAAYEAAR 468 >gi|161504129|ref|YP_001571241.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp. arizonae serovar 62:z4,z23:-- str. RSK2980] gi|160865476|gb|ABX22099.1| hypothetical protein SARI_02227 [Salmonella enterica subsp. arizonae serovar 62:z4,z23:--] Length = 473 Score = 541 bits (1393), Expect = e-151, Method: Compositional matrix adjust. Identities = 257/475 (54%), Positives = 338/475 (71%), Gaps = 6/475 (1%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M HLVW R DLR+ DN AL AAC ++ A+V+A++IATP QW+ H ++ RQ+ FI A L Sbjct: 1 MPTHLVWFRRDLRLQDNLALAAACRDASARVLALYIATPAQWQAHDMAPRQAAFISAQLN 60 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 +Q +L++KGI +H+ ++F SIE + + C Q V+ LFYN +YE+NE +RD +EK Sbjct: 61 ALQTALAEKGIPLLFHEVADFSASIETVKNVCRQHDVSHLFYNYEYEVNERQRDAAVEKA 120 Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 LQ VIC+ FDDSV+LPPG+++ +MYKV+TPF+ A ++ L + +P P IR +G Sbjct: 121 LQS-VICEGFDDSVILPPGAVMTGNHEMYKVFTPFKNAWLKRLKEDIPPCVPAPKIRASG 179 Query: 187 PVTPSNIPRFFDYPFQAIDP-MFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245 ++ P +YP QA D +FP+ E A+ LR+FC + Y +RD PA++GTS+L Sbjct: 180 ALSTPLTPVSLNYPQQAFDAALFPVEENAAIAQLRQFCAQGADGYASRRDFPAVEGTSRL 239 Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFS-WLNELIWREFYRHLMAFYPSVCMG 304 S L+ G LSPRQC +RL E L G S WLNELIWREFYRHLM +YP++C Sbjct: 240 SASLATGGLSPRQCLHRLLAEQPQAL---DGGPGSVWLNELIWREFYRHLMTWYPALCKH 296 Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364 +PFI WT+++ W ++ H QAW++G TG+PI+DAAMRQLN GWMHNRLRMITASFLVKD Sbjct: 297 QPFIRWTKRVTWQENPHYFQAWRKGETGYPIVDAAMRQLNATGWMHNRLRMITASFLVKD 356 Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424 LL+DWR+GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG+RFD G F Sbjct: 357 LLIDWRLGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGERFDRDGEF 416 Query: 425 IRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479 IR WLP L ++P + IH P W +K + L+YP PIVDHK+A TL+ Y AA+K Sbjct: 417 IRQWLPALRDIPGKAIHEPWRWAEKAGVVLDYPRPIVDHKQARIATLSAYEAARK 471 >gi|323976322|gb|EGB71412.1| DNA photolyase [Escherichia coli TW10509] Length = 472 Score = 538 bits (1387), Expect = e-151, Method: Compositional matrix adjust. Identities = 257/476 (53%), Positives = 341/476 (71%), Gaps = 9/476 (1%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M+ HLVW R DLR+ DN AL AAC S A+V+A++IATP QW H +S RQ+ FI A L Sbjct: 1 MTTHLVWFRQDLRLHDNLALAAACRYSSARVLALYIATPRQWAAHNMSPRQAEFINAQLN 60 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 +Q +L++KGI +H+ +F S+E + C + RVT LFYN QYE+NE RD +E+ Sbjct: 61 GLQIALAEKGIPLLFHEVDDFAASVEIVKQVCAENRVTHLFYNYQYEVNERARDVQVERT 120 Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 L++ V+C+ FDDSV+LPPG+++ +MYKV+TPF+ A ++ L + + P +R +G Sbjct: 121 LRN-VVCEGFDDSVILPPGAVMTGNHEMYKVFTPFKNAWLKRLREGGPECVAAPKVRSSG 179 Query: 187 PVTPSNIPRF-FDYPFQAIDPM-FPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244 + P+ P +YP Q+ D FP+ E+ A+ LR+FC+ Y +QRD PA++GTS+ Sbjct: 180 SIEPA--PSITLNYPRQSFDTAHFPVEEKAAIAQLRQFCQNGAGEYEQQRDFPAVEGTSR 237 Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFS-WLNELIWREFYRHLMAFYPSVCM 303 LS L+ G LSPRQC +RL E L GA S WLNELIWREFYRHLM ++PS+C Sbjct: 238 LSASLATGGLSPRQCLHRLLAEQPQAL---DGGAGSVWLNELIWREFYRHLMTYHPSLCK 294 Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363 +PFI WT++++W + L+AW++G TG+PI+DAAMRQLN+ GWMHNRLRMITASFLVK Sbjct: 295 HRPFIAWTDRVQWQSNPAHLKAWQEGKTGYPIVDAAMRQLNSSGWMHNRLRMITASFLVK 354 Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423 DLL+DWR GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG++FD +G Sbjct: 355 DLLIDWREGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGEKFDREGE 414 Query: 424 FIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479 FIR WLPEL +VP + +H P W DK+ ++L+YP PIVDHK+A TL Y AA+K Sbjct: 415 FIRRWLPELRDVPGKAVHEPWKWADKSGVTLDYPQPIVDHKEARVRTLAAYEAARK 470 >gi|156934798|ref|YP_001438714.1| deoxyribodipyrimidine photolyase [Cronobacter sakazakii ATCC BAA-894] gi|156533052|gb|ABU77878.1| hypothetical protein ESA_02638 [Cronobacter sakazakii ATCC BAA-894] Length = 473 Score = 537 bits (1384), Expect = e-150, Method: Compositional matrix adjust. Identities = 261/477 (54%), Positives = 342/477 (71%), Gaps = 7/477 (1%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M+ HLVW R DLR+ DN AL AAC + DA+VI +FIATP+QWR H ++ RQ+ FI+ +L Sbjct: 1 MTTHLVWFRADLRVNDNLALAAACRDPDARVIGLFIATPQQWRDHTLAPRQAAFIHQNLE 60 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 +Q++L+++GI + +F +++ L ++C +Q+V+ LFYN QYE+NE RRD +E+R Sbjct: 61 ALQQALAKRGIALFTREVPDFAAAVDALAAFCDEQQVSALFYNYQYELNEARRDAAVERR 120 Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 L+ RV C+ FDDSV+LPPGS++ +MYKV+TP+ +A ++ L + + P R G Sbjct: 121 LEGRVACQGFDDSVMLPPGSVVTGNGEMYKVFTPYSRAFLRRLGEGLPACVSAPKPRHGG 180 Query: 187 PVT--PSNIPRFFDYPFQAIDPM-FPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS 243 +T P P FDYP + D + FP GE+ AL LR+FC+ Y E+RD PAI+GTS Sbjct: 181 AITDVPGLAP--FDYPCETPDALLFPAGEEAALKRLREFCQTAAGDYPEKRDFPAIRGTS 238 Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCM 303 LS YL+IGVLSPRQC +RL E L + SGA WLNELIWREFYRHL+ +P +C Sbjct: 239 LLSAYLAIGVLSPRQCLHRLLTEHPRAL-EGGSGAV-WLNELIWREFYRHLIVAWPHLCR 296 Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363 +PFI WT ++ W ++ QAW +G TG+PI+DAAMRQ+N GWMHNRLRMITASFLVK Sbjct: 297 HQPFIDWTARVAWQQNDAHFQAWCEGNTGYPIVDAAMRQMNATGWMHNRLRMITASFLVK 356 Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423 DLLVDWR GE YFMSQL+DGD A+NNGGWQWAASTG D+ PYFRIFNPT QG+RFD +G Sbjct: 357 DLLVDWRRGERYFMSQLIDGDFAANNGGWQWAASTGTDAAPYFRIFNPTTQGQRFDAEGE 416 Query: 424 FIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQ 480 FIR W+PEL+++P + +H PH W KN +L YP PIVDHK+A TL Y AA+K+ Sbjct: 417 FIRRWVPELSHIPGKAVHEPHLWAKKNGKALRYPQPIVDHKQARVATLAAYEAARKE 473 >gi|331662061|ref|ZP_08362984.1| deoxyribodipyrimidine photolyase [Escherichia coli TA143] gi|331060483|gb|EGI32447.1| deoxyribodipyrimidine photolyase [Escherichia coli TA143] Length = 472 Score = 537 bits (1384), Expect = e-150, Method: Compositional matrix adjust. Identities = 257/476 (53%), Positives = 338/476 (71%), Gaps = 9/476 (1%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M+ HLVW R DLR DN AL AAC NS A+V+A++IATP QW H +S RQ+ I A L Sbjct: 1 MTTHLVWFRQDLRQHDNLALAAACRNSSARVLALYIATPRQWAAHNVSPRQAELINAQLN 60 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 +Q +L++KGI +H+ +F S+E + C + RVT+LFYN QYE+NE RD +E+ Sbjct: 61 GLQIALAEKGIPLLFHEVDDFAASVEIVKQVCAENRVTRLFYNYQYEVNERARDAQVERT 120 Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 L++ V+C+ FDDSV+LPPG+++ +MYKV+TPF+ A ++ L + + P +R +G Sbjct: 121 LRN-VVCEGFDDSVILPPGAVMTGNHEMYKVFTPFKNAWLKRLREGMPECVAAPKVRSSG 179 Query: 187 PVTPSNIPRF-FDYPFQAIDPM-FPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244 + P+ P +YP Q D FP+ E+ A+ LR+FC+ Y +QRD PA++GTS+ Sbjct: 180 SIDPA--PSITLNYPRQPFDTAHFPVEEKAAIAQLRQFCQNGAGEYEQQRDFPAVEGTSR 237 Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFS-WLNELIWREFYRHLMAFYPSVCM 303 LS L+ G LSPRQC +RL E L GA S WL+ELIWREFYRHLM +YPS+C Sbjct: 238 LSASLATGGLSPRQCLHRLLAEQPQAL---DGGAGSVWLSELIWREFYRHLMTYYPSLCK 294 Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363 PFI WT++++W + LQAW++G TG+PI+DAAMRQLN+ GWMHNRLRMITASFLVK Sbjct: 295 HCPFIAWTDRVQWQSNPAHLQAWQEGKTGYPIVDAAMRQLNSTGWMHNRLRMITASFLVK 354 Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423 DLL+DWR GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG++FD +G Sbjct: 355 DLLIDWREGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGEKFDREGE 414 Query: 424 FIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479 FIR WLPEL +VP + +H P W DK+ ++L+YP PIVDHK+A TL Y A+K Sbjct: 415 FIRQWLPELRDVPGKVVHEPWKWADKSGVTLDYPQPIVDHKEARLRTLAAYEEARK 470 >gi|218688505|ref|YP_002396717.1| deoxyribodipyrimidine photolyase [Escherichia coli ED1a] gi|218426069|emb|CAR06886.1| deoxyribodipyrimidine photolyase, FAD-binding [Escherichia coli ED1a] Length = 472 Score = 535 bits (1378), Expect = e-150, Method: Compositional matrix adjust. Identities = 253/476 (53%), Positives = 337/476 (70%), Gaps = 9/476 (1%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M+ HLVW R DLR DN AL AAC NS A+V+A++IATP QW H +S RQ+ I L Sbjct: 1 MTTHLVWFRQDLRQHDNLALAAACRNSSARVLALYIATPRQWAAHNVSPRQAELINTQLN 60 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 +Q +L++KGI +H+ +F S+E + C + R+T LFYN QYE+NE RD E+ Sbjct: 61 ALQNALAEKGIPLLFHEVDDFAASVETVKQVCAENRITHLFYNYQYEVNERARDVQAERT 120 Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 L++ V+C+ FDDSV+LPPG+++ +MYKV+TPF+ A ++ L + + P +R +G Sbjct: 121 LRN-VVCEGFDDSVILPPGAVMTGNHEMYKVFTPFKNAWLKRLREGMPECVAAPKVRSSG 179 Query: 187 PVTPSNIPRF-FDYPFQAIDPM-FPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244 + P+ P +YP Q+ D FP+ E+ A+ LR+FC+ Y +QRD PA++GTS+ Sbjct: 180 SIEPA--PSITLNYPRQSFDTAHFPVEEKAAIAQLRQFCQNGAGEYEQQRDFPAVEGTSR 237 Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFS-WLNELIWREFYRHLMAFYPSVCM 303 LS L+ G LSPRQC +RL E +L + G S WLNELIWREFYRHLM +YPS+C Sbjct: 238 LSASLATGGLSPRQCLHRLLAEQPQVL---EGGPGSVWLNELIWREFYRHLMTYYPSLCK 294 Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363 +PFI WT++++W + L+AW++G TG+PI+DAAMRQLN+ GWMHNRLRMITASFLVK Sbjct: 295 HRPFIAWTDRVQWQSNPAHLKAWQEGKTGYPIVDAAMRQLNSTGWMHNRLRMITASFLVK 354 Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423 DLL+DWR GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG++FD +G Sbjct: 355 DLLIDWREGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGEKFDREGE 414 Query: 424 FIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479 FIR WLPEL +VP + +H P W +K ++L+YP PIVDHK+A TL Y A+K Sbjct: 415 FIRQWLPELRDVPGKAVHEPWKWAEKTGVTLDYPQPIVDHKEARLRTLAAYEEARK 470 >gi|296103357|ref|YP_003613503.1| deoxyribodipyrimidine photolyase [Enterobacter cloacae subsp. cloacae ATCC 13047] gi|295057816|gb|ADF62554.1| deoxyribodipyrimidine photolyase [Enterobacter cloacae subsp. cloacae ATCC 13047] Length = 470 Score = 535 bits (1378), Expect = e-150, Method: Compositional matrix adjust. Identities = 263/476 (55%), Positives = 339/476 (71%), Gaps = 10/476 (2%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M HLVW R DLR+ DN AL AAC + A+V+A+FIATP QW+QH ++ RQ+ ++ + L Sbjct: 1 MPTHLVWFRADLRLHDNIALAAACRSEHARVLALFIATPGQWQQHDMAPRQAAYLCSHLN 60 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 +Q+SL++KGI Y + S+F + + C Q VT LFYN QYE NE +RD+ LE R Sbjct: 61 ALQRSLAEKGIPLIYKEVSDFTAQLSAVQEVCQQNDVTHLFYNYQYEFNEQQRDRELE-R 119 Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 + V C+ FDDSV+L PGS++ +MYKV+TPF+ A I+ L +A + P+ R G Sbjct: 120 ILGDVECQGFDDSVMLAPGSVMTGNREMYKVFTPFKNAFIKRLKEALPECVAAPSAR--G 177 Query: 187 PVTPSNIPRF-FDYPFQAID-PMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244 +++P FDYP QA D +FP E+ A+ LR+FCK Y +RD PAI+GTS+ Sbjct: 178 ECV-NDLPELTFDYPQQAYDHSLFPADEKAAIAQLRQFCKTGAAAYEARRDFPAIEGTSR 236 Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFS-WLNELIWREFYRHLMAFYPSVCM 303 LS L++GVLSPRQC +RL E L + GA S WLNELIWREFYRHLM ++P +C Sbjct: 237 LSACLALGVLSPRQCLHRLLAEQPQAL---EGGAGSVWLNELIWREFYRHLMTYHPELCK 293 Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363 +PFI WTE ++W ++ LLQAW++G TG+PI+DAAMRQLN GWMHNRLRMITASFLVK Sbjct: 294 HRPFIRWTENVQWQQNEMLLQAWQKGETGYPIVDAAMRQLNETGWMHNRLRMITASFLVK 353 Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423 DLL+DWR+GE YF+SQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG++FD GT Sbjct: 354 DLLIDWRVGERYFISQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGQKFDADGT 413 Query: 424 FIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479 FIRHWLP L VP + IH P +W DK ++L+YP PIV+HK+A TL Y AA+K Sbjct: 414 FIRHWLPALKAVPAKAIHDPWAWADKQGVTLDYPRPIVEHKQARVATLAAYEAARK 469 >gi|291281640|ref|YP_003498458.1| Deoxyribodipyrimidine photolyase [Escherichia coli O55:H7 str. CB9615] gi|209776604|gb|ACI86614.1| deoxyribodipyrimidine photolyase [Escherichia coli] gi|290761513|gb|ADD55474.1| Deoxyribodipyrimidine photolyase [Escherichia coli O55:H7 str. CB9615] gi|320654283|gb|EFX22336.1| deoxyribodipyrimidine photolyase [Escherichia coli O55:H7 str. 3256-97 TW 07815] gi|320659916|gb|EFX27458.1| deoxyribodipyrimidine photolyase [Escherichia coli O55:H7 str. USDA 5905] Length = 472 Score = 534 bits (1375), Expect = e-149, Method: Compositional matrix adjust. Identities = 256/476 (53%), Positives = 336/476 (70%), Gaps = 9/476 (1%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M+ HLVW R DLR+ DN AL AAC NS A+V+A++IATP QW H +S RQ+ I A L Sbjct: 1 MTTHLVWFRQDLRLHDNLALAAACRNSSARVLALYIATPRQWAAHNMSPRQAELINAQLN 60 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 +Q +L++KGI + + +F S+E + C + VT LFYN QYE+NE RD +E+ Sbjct: 61 GLQIALAEKGIPLLFREVDDFAASVEIVKQVCAENSVTHLFYNYQYEVNERARDVQVERT 120 Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 L++ V+C+ FDDSV+LPPG+++ +MYKV+TPF+ A ++ L + + P +R +G Sbjct: 121 LRN-VVCEGFDDSVILPPGAVMTGNHEMYKVFTPFKNAWLKRLREGMPECVAAPKVRSSG 179 Query: 187 PVTPSNIPRF-FDYPFQAIDPM-FPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244 + P+ P +YP Q+ D FP+ E+ A+ LR+FC+ Y +QRD PA++GTS+ Sbjct: 180 SIKPA--PSITLNYPRQSFDTAHFPVEEKAAIAQLRQFCQNGAGEYEQQRDFPAVEGTSR 237 Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFS-WLNELIWREFYRHLMAFYPSVCM 303 LS L+ G LSPRQC +RL E L GA S WLNELIWREFYRHLM +YPS+C Sbjct: 238 LSASLATGGLSPRQCLHRLLAEQPQAL---DGGAGSVWLNELIWREFYRHLMTYYPSLCK 294 Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363 PFI WT++++W + LQAW++G TG+PI+DAAMRQLN+ GWMHNRLRMITASFLVK Sbjct: 295 HCPFIAWTDRVQWQSNPAHLQAWQEGKTGYPIVDAAMRQLNSTGWMHNRLRMITASFLVK 354 Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423 DLL+DWR GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG++FD +G Sbjct: 355 DLLIDWREGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGEKFDREGE 414 Query: 424 FIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479 FIR WLPEL NVP + +H P W +K + L+YP PIV+HK+A TL Y AA+K Sbjct: 415 FIRQWLPELRNVPGKSVHEPWKWAEKAGVKLDYPQPIVEHKEARVQTLAAYEAARK 470 >gi|281177846|dbj|BAI54176.1| deoxyribodipyrimidine photolyase [Escherichia coli SE15] Length = 472 Score = 533 bits (1374), Expect = e-149, Method: Compositional matrix adjust. Identities = 253/478 (52%), Positives = 338/478 (70%), Gaps = 9/478 (1%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M+ HLVW R DLR+ DN AL AAC NS A+V+A++IATP QW H +S RQ+ I L Sbjct: 1 MTTHLVWFRQDLRLHDNLALAAACRNSSARVLALYIATPRQWAAHNVSPRQAELINTQLN 60 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 +Q +L++KGI + + +F S+E + C + RVT LFYN QYE+NE RD +E+ Sbjct: 61 ALQNALAEKGIPLLFREVDDFAASVEIVKQVCAENRVTHLFYNYQYEVNERARDVEVERA 120 Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 L++ V+C+ FDDSV+LPPG+++ +MYKV+TPF+ A ++ L + + P +R +G Sbjct: 121 LRN-VVCEGFDDSVILPPGAVMTGNHEMYKVFTPFKNAWLKRLREGMPECVAAPKVRSSG 179 Query: 187 PVTPSNIPRF-FDYPFQAIDPM-FPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244 + P+ P +YP Q+ D FP+ E+ A+ LR+FC+ Y +QRD PA++GTS+ Sbjct: 180 AIDPA--PSITLNYPRQSFDTAHFPVEEKAAIAQLRQFCQNGAGEYEQQRDFPAVEGTSR 237 Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFS-WLNELIWREFYRHLMAFYPSVCM 303 LS L+ G LSPRQC +RL E L GA S WL+ELIWREFYRHLM +YPS+C Sbjct: 238 LSASLATGGLSPRQCLHRLLAEQPQAL---DGGAGSVWLSELIWREFYRHLMTYYPSLCK 294 Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363 +PFI WT++++W + L+AW++G TG+PI+DAAMRQLN+ GWMHNRLRMITASFLVK Sbjct: 295 HRPFIAWTDRVQWQSNPAHLKAWQEGKTGYPIVDAAMRQLNSTGWMHNRLRMITASFLVK 354 Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423 DLL+DWR GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG++FD +G Sbjct: 355 DLLIDWREGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGEKFDREGE 414 Query: 424 FIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481 FIR WLPEL +VP + +H P W +K ++L+YP PIVDHK+A TL Y A+K + Sbjct: 415 FIRQWLPELRDVPGKAVHEPWKWAEKTGVTLDYPQPIVDHKEARLRTLAAYEEARKGA 472 >gi|323967456|gb|EGB62875.1| DNA photolyase [Escherichia coli M863] gi|327254382|gb|EGE66004.1| deoxyribodipyrimidine photo-lyase [Escherichia coli STEC_7v] Length = 472 Score = 533 bits (1374), Expect = e-149, Method: Compositional matrix adjust. Identities = 257/476 (53%), Positives = 336/476 (70%), Gaps = 9/476 (1%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M+ HLVW R DLR+ DN AL AAC NS A+V+A++IATP QW H +S RQ+ FI A L Sbjct: 1 MTTHLVWFRQDLRLHDNLALAAACRNSSARVLALYIATPRQWAAHNVSPRQAEFINAQLN 60 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 +Q +L++KGI +H+ +F S+E + C + RVT LFYN QYE+NE RD +E+ Sbjct: 61 GLQIALAEKGIPLLFHEVDDFAASVEIVKQVCAENRVTHLFYNYQYEVNERARDVQVERT 120 Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 L++ V+C+ FDDSV+LPPG+++ +MYKV+TPF+ A ++ L + + P +R + Sbjct: 121 LRN-VVCEGFDDSVILPPGAVMTGNHEMYKVFTPFKNAWLKRLREGVPECVAAPKVRSS- 178 Query: 187 PVTPSNIPRF-FDYPFQAIDPM-FPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244 V P +YP Q D FP+ E+ A+ LR+FC+ Y +QRD PA++GTS+ Sbjct: 179 -VMIEAAPSITLNYPRQPFDTAHFPVEEKAAIAQLRQFCQSGAGEYEQQRDFPAVEGTSR 237 Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFS-WLNELIWREFYRHLMAFYPSVCM 303 LS L+ G LSPRQC +RL E L GA S WLNELIWREFYRHLM +YPS+C Sbjct: 238 LSASLATGGLSPRQCLHRLLAEQPQAL---DGGAGSVWLNELIWREFYRHLMTYYPSLCK 294 Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363 +PFI WT++++W + L+AW++G TG+PI+DAAMRQLN+ GWMHNRLRMITASFLVK Sbjct: 295 HRPFIAWTDRVQWQSNPAHLKAWQEGKTGYPIVDAAMRQLNSTGWMHNRLRMITASFLVK 354 Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423 DLL+DWR GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG++FD +G Sbjct: 355 DLLIDWREGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGEKFDHEGE 414 Query: 424 FIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479 FIR WLPEL +VP + +H P W K ++L+YP PIVDHK+A TL Y AA+K Sbjct: 415 FIRQWLPELRDVPGKAVHEPWKWAQKAGVTLDYPQPIVDHKEARVRTLAAYEAARK 470 >gi|331645860|ref|ZP_08346963.1| deoxyribodipyrimidine photo-lyase (DNA photolyase)(Photoreactivating enzyme) [Escherichia coli M605] gi|330910459|gb|EGH38969.1| deoxyribodipyrimidine photolyase [Escherichia coli AA86] gi|331044612|gb|EGI16739.1| deoxyribodipyrimidine photo-lyase (DNA photolyase)(Photoreactivating enzyme) [Escherichia coli M605] Length = 472 Score = 533 bits (1373), Expect = e-149, Method: Compositional matrix adjust. Identities = 253/478 (52%), Positives = 338/478 (70%), Gaps = 9/478 (1%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M+ HLVW R DLR+ DN AL AAC NS A+V+A++IATP QW H +S RQ+ I L Sbjct: 1 MTTHLVWFRQDLRLHDNLALAAACRNSSARVLALYIATPRQWAAHNVSPRQAELINTQLN 60 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 +Q +L++KGI + + +F S+E + C + RVT LFYN QYE+NE RD +E+ Sbjct: 61 ALQNALAEKGIPLLFREVDDFAASVEIVKQVCAENRVTHLFYNYQYEVNERARDVEVERA 120 Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 L++ V+C+ FDDSV+LPPG+++ +MYKV+TPF+ A ++ L + + P +R +G Sbjct: 121 LRN-VVCEGFDDSVILPPGAVMTGNHEMYKVFTPFKNAWLKRLREGMPECVAAPKVRSSG 179 Query: 187 PVTPSNIPRF-FDYPFQAIDPM-FPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244 + P+ P +YP Q+ D FP+ E+ A+ LR+FC+ Y +QRD PA++GTS+ Sbjct: 180 SIDPA--PSITLNYPCQSFDTAHFPVEEKAAIAQLRQFCQNGAGEYEQQRDFPAVEGTSR 237 Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFS-WLNELIWREFYRHLMAFYPSVCM 303 LS L+ G LSPRQC +RL E L GA S WL+ELIWREFYRHLM +YPS+C Sbjct: 238 LSASLATGGLSPRQCLHRLLAEQPQAL---DGGAGSVWLSELIWREFYRHLMTYYPSLCK 294 Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363 +PFI WT++++W + L+AW++G TG+PI+DAAMRQLN+ GWMHNRLRMITASFLVK Sbjct: 295 HRPFIAWTDRVQWQSNPAHLKAWQEGKTGYPIVDAAMRQLNSTGWMHNRLRMITASFLVK 354 Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423 DLL+DWR GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG++FD +G Sbjct: 355 DLLIDWREGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGEKFDHEGE 414 Query: 424 FIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481 FIR WLPEL +VP + +H P W +K ++L+YP PIVDHK+A TL Y A+K + Sbjct: 415 FIRQWLPELRDVPGKAVHEPWKWAEKTGVTLDYPQPIVDHKEARLRTLAAYEEARKGA 472 >gi|293409079|ref|ZP_06652655.1| conserved hypothetical protein [Escherichia coli B354] gi|291469547|gb|EFF12031.1| conserved hypothetical protein [Escherichia coli B354] Length = 472 Score = 533 bits (1372), Expect = e-149, Method: Compositional matrix adjust. Identities = 254/478 (53%), Positives = 341/478 (71%), Gaps = 9/478 (1%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M++HLVW R DLR+ DN AL AAC S A+V+A++IATP QW H +S RQ+ FI A L Sbjct: 1 MTIHLVWFRQDLRLHDNFALAAACRYSSARVLALYIATPRQWAAHNMSPRQAEFINAQLN 60 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 +Q +L++KGI +H+ +F S+E ++ C + RVT LFYN QYE+NE RD +E+ Sbjct: 61 GLQIALAEKGIPLLFHEVDDFAASVEIVEQVCAENRVTHLFYNYQYEVNERARDVQVERT 120 Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 L++ V+C+ FDDSV+LPPG+++ +MYKV+TPF+ A ++ L + + P +R +G Sbjct: 121 LRN-VVCEGFDDSVILPPGTVMTGNHEMYKVFTPFKNAWLKRLREGMPECVAAPKVRSSG 179 Query: 187 PVTPSNIPRF-FDYPFQAIDPM-FPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244 + P+ P +YP Q D FP+ E+ A+ LR+FC+ Y +QRD PA++GTS+ Sbjct: 180 SIDPA--PSITLNYPRQPFDTAHFPVEEKAAIAQLRQFCQNGAGEYEQQRDFPAVEGTSR 237 Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFS-WLNELIWREFYRHLMAFYPSVCM 303 LS L+ G LSPRQC +RL E L GA S WLNELIWREFYRHL+ ++PS+C Sbjct: 238 LSASLATGGLSPRQCLHRLLAEQPQAL---DGGAGSVWLNELIWREFYRHLITYHPSLCK 294 Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363 +PFI WT++++W ++ +AW++G TG+PI+DAAMRQLN+ GWMHNRLRMITASFLVK Sbjct: 295 HRPFIVWTDRVQWQRNPTHFKAWQEGKTGYPIVDAAMRQLNSTGWMHNRLRMITASFLVK 354 Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423 DLL+DWR GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG++FD +G Sbjct: 355 DLLIDWREGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGEKFDREGE 414 Query: 424 FIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481 FIR WLPEL NVP + +H P W +K ++L+YP PIVDHK+A TL Y A+K + Sbjct: 415 FIRQWLPELRNVPGKAVHEPWKWAEKAGVTLDYPQPIVDHKEARLRTLAAYEEARKGA 472 >gi|204929858|ref|ZP_03220879.1| deoxyribodipyrimidine photo-lyase [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|204320852|gb|EDZ06053.1| deoxyribodipyrimidine photo-lyase [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] Length = 473 Score = 533 bits (1372), Expect = e-149, Method: Compositional matrix adjust. Identities = 255/477 (53%), Positives = 337/477 (70%), Gaps = 6/477 (1%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M HLVW R DLR+ DN AL AAC ++ A+V+A++I+TP QW+ H ++ RQ+ FI A L Sbjct: 1 MPTHLVWFRRDLRLQDNLALAAACRDASARVLALYISTPAQWQAHDMAPRQAAFISAQLN 60 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 +Q +L++KGI +H+ ++F+ SIE + + C Q V+ LFYN QYE NE +RD +EK Sbjct: 61 ALQAALAEKGIPLLFHEVADFNASIETVKNVCRQHDVSHLFYNYQYEFNERQRDAAVEKT 120 Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 L VIC+ FDDSV+L PG+++ +MYKV+TPF+ A ++ L + +P P IR++G Sbjct: 121 LPS-VICEGFDDSVILAPGAVMTGNHEMYKVFTPFKNAWLKRLKEDIPPCVPAPKIRVSG 179 Query: 187 PVTPSNIPRFFDYPFQAIDP-MFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245 ++ P +YP QA D +FP+ E + LR+FC + Y QRD PA+ GTS+L Sbjct: 180 ALSTPLTPVSLNYPQQAFDAALFPVEENAVIAQLRQFCAQGADEYESQRDFPAVDGTSRL 239 Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFS-WLNELIWREFYRHLMAFYPSVCMG 304 S L+ G LSPRQC +RL E L G S WLNELIWREFYRHLM +YP++C Sbjct: 240 SASLATGGLSPRQCLHRLLAEQPQAL---DGGPGSVWLNELIWREFYRHLMTWYPALCKH 296 Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364 +PFI WT+++ W ++SH QAW++G TG+PI+DAAMRQLN GWMHNRLRMITASFLVKD Sbjct: 297 QPFIRWTKRVAWQENSHYFQAWQKGETGYPIVDAAMRQLNATGWMHNRLRMITASFLVKD 356 Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424 LL+DWR+GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG+RFD G F Sbjct: 357 LLIDWRLGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGERFDRDGEF 416 Query: 425 IRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481 IR WLP L ++P + IH P W +K + L+YP PIV+HK+A TL+ Y AA+K + Sbjct: 417 IRQWLPALRDIPGKAIHEPWRWAEKAGVVLDYPRPIVEHKQARIATLSAYEAARKGA 473 >gi|168230599|ref|ZP_02655657.1| deoxyribodipyrimidine photo-lyase [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|194472292|ref|ZP_03078276.1| deoxyribodipyrimidine photo-lyase [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|194458656|gb|EDX47495.1| deoxyribodipyrimidine photo-lyase [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|205334675|gb|EDZ21439.1| deoxyribodipyrimidine photo-lyase [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] Length = 473 Score = 533 bits (1372), Expect = e-149, Method: Compositional matrix adjust. Identities = 254/477 (53%), Positives = 337/477 (70%), Gaps = 6/477 (1%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M HLVW R DLR+ DN AL AAC ++ A+V+A++I+TP QW+ H ++ RQ+ FI A L Sbjct: 1 MPTHLVWFRRDLRLQDNLALAAACRDASARVLALYISTPAQWQAHDMAPRQAAFISAQLN 60 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 +Q +L++KGI +H+ ++F+ SIE + + C Q V+ LFYN QYE NE +RD +EK Sbjct: 61 ALQAALAEKGIPLLFHEVADFNASIETVKNVCRQHDVSHLFYNYQYEFNERQRDAAVEKT 120 Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 L VIC+ FDDSV+L PG+++ +MYKV+TPF+ A ++ L + +P P IR++G Sbjct: 121 LPS-VICEGFDDSVILAPGAVMTGNHEMYKVFTPFKNAWLKRLKEDIPPCVPAPKIRVSG 179 Query: 187 PVTPSNIPRFFDYPFQAIDP-MFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245 ++ P +YP QA D +FP+ E + LR+FC + Y QRD PA++GTS+L Sbjct: 180 ALSTPLTPVSLNYPQQAFDAALFPVEENAVIAQLRQFCAQGADGYASQRDFPAVEGTSRL 239 Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFS-WLNELIWREFYRHLMAFYPSVCMG 304 S L+ G LSPRQC +RL E L G S WLNELIWREFYRHLM +YP++C Sbjct: 240 SASLATGGLSPRQCLHRLLAEQPQAL---DGGPGSVWLNELIWREFYRHLMTWYPALCKH 296 Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364 +PFI WT+++ W ++ H QAW++G TG+PI+DAAMRQLN GWMHNRLRMITASFLVKD Sbjct: 297 QPFIRWTKRVAWQENPHYFQAWQKGETGYPIVDAAMRQLNATGWMHNRLRMITASFLVKD 356 Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424 LL+DWR+GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG+RFD G F Sbjct: 357 LLIDWRLGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGERFDRDGEF 416 Query: 425 IRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481 IR WLP L ++P + IH P W +K + L+YP PIV+HK+A TL+ Y AA+K + Sbjct: 417 IRQWLPALRDIPGKAIHEPWRWAEKAGVMLDYPRPIVEHKQARIATLSAYEAARKGA 473 >gi|198244498|ref|YP_002214691.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|197939014|gb|ACH76347.1| deoxyribodipyrimidine photo-lyase [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|326622447|gb|EGE28792.1| deoxyribodipyrimidine photo-lyase [Salmonella enterica subsp. enterica serovar Dublin str. 3246] Length = 473 Score = 532 bits (1371), Expect = e-149, Method: Compositional matrix adjust. Identities = 254/477 (53%), Positives = 337/477 (70%), Gaps = 6/477 (1%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M HLVW R DLR+ DN AL AAC ++ A+V+A++I+TP QW+ HG++ RQ+ FI A L Sbjct: 1 MPTHLVWFRRDLRLQDNLALAAACRDASARVLALYISTPAQWQAHGMAPRQAAFISAQLN 60 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 +Q +L++KGI +H+ ++F+ SIE + + C Q V+ LFYN QYE NE +RD +EK Sbjct: 61 ALQAALAEKGIPLLFHEVADFNASIETVKNVCRQHDVSHLFYNYQYEFNERQRDAAVEKT 120 Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 L VIC+ FDDSV+L PG+++ +MYKV+TPF+ A ++ L + +P P IR++G Sbjct: 121 LPS-VICEGFDDSVILAPGAVMTGNHEMYKVFTPFKNAWLKRLKEDIPPCVPAPKIRVSG 179 Query: 187 PVTPSNIPRFFDYPFQAIDP-MFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245 ++ P +YP QA D +FP+ E + LR+FC + Y +RD PA+ GTS+L Sbjct: 180 ALSTPLTPVSLNYPQQAFDAALFPVEENAVIAQLRQFCAQGADGYALRRDFPAVDGTSRL 239 Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFS-WLNELIWREFYRHLMAFYPSVCMG 304 S L+ G LSPRQC +RL E L G S WLNELIWREFYRHLM +YP++C Sbjct: 240 SASLATGGLSPRQCLHRLLAEHPQAL---DGGPGSVWLNELIWREFYRHLMTWYPALCKH 296 Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364 +PFI WT+++ W ++ H QAW++G TG+PI+DAAMRQLN GWMHNRLRMITASFLVKD Sbjct: 297 QPFIRWTKRVAWQENPHYFQAWQKGETGYPIVDAAMRQLNATGWMHNRLRMITASFLVKD 356 Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424 LL+DWR+GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG+RFD G F Sbjct: 357 LLIDWRLGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGERFDRDGEF 416 Query: 425 IRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481 IR WLP L ++P + IH P W +K + L+YP PIV+HK+A TL+ Y AA+K + Sbjct: 417 IRQWLPALRDIPGKAIHEPWRWAEKAGVVLDYPRPIVEHKQARIATLSAYEAARKGA 473 >gi|306812880|ref|ZP_07447073.1| deoxyribodipyrimidine photolyase [Escherichia coli NC101] gi|305853643|gb|EFM54082.1| deoxyribodipyrimidine photolyase [Escherichia coli NC101] gi|324006250|gb|EGB75469.1| FAD binding domain of DNA photolyase [Escherichia coli MS 57-2] Length = 472 Score = 532 bits (1371), Expect = e-149, Method: Compositional matrix adjust. Identities = 252/476 (52%), Positives = 336/476 (70%), Gaps = 9/476 (1%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M+ HLVW R DLR DN AL AAC NS A+V+A++IATP QW H +S RQ+ I L Sbjct: 1 MTTHLVWFRQDLRQHDNLALAAACRNSSARVLALYIATPRQWAAHNVSPRQAELINTQLN 60 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 +Q +L++KGI + + +F S+E + C + R+T LFYN QYE+NE RD E+ Sbjct: 61 ALQNALAEKGIPLLFREVDDFAASVETVKQVCAENRITHLFYNYQYEVNERARDVQAERT 120 Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 L++ V+C+ FDDSV+LPPG+++ +MYKV+TPF+ A ++ L + + P +R +G Sbjct: 121 LRN-VVCEGFDDSVILPPGAVMTGNHEMYKVFTPFKNAWLKRLREGMPECVAAPKVRSSG 179 Query: 187 PVTPSNIPRF-FDYPFQAIDPM-FPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244 + P+ P +YP Q+ D FP+ E+ A+ LR+FC+ Y +QRD PA++GTS+ Sbjct: 180 SIEPA--PSITLNYPRQSFDTAHFPVEEKAAIAQLRQFCQNGAGEYEQQRDFPAVEGTSR 237 Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFS-WLNELIWREFYRHLMAFYPSVCM 303 LS L+ G LSPRQC +RL E +L + G S WLNELIWREFYRHLM +YPS+C Sbjct: 238 LSASLATGGLSPRQCLHRLLAEQPQVL---EGGPGSVWLNELIWREFYRHLMTYYPSLCK 294 Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363 +PFI WT++++W + L+AW++G TG+PI+DAAMRQLN+ GWMHNRLRMITASFLVK Sbjct: 295 HRPFIAWTDRVQWQSNPAHLKAWQEGKTGYPIVDAAMRQLNSTGWMHNRLRMITASFLVK 354 Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423 DLL+DWR GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG++FD +G Sbjct: 355 DLLIDWREGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGEKFDREGE 414 Query: 424 FIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479 FIR WLPEL +VP + +H P W +K ++L+YP PIVDHK+A TL Y A+K Sbjct: 415 FIRQWLPELRDVPGKAVHEPWKWAEKTGVTLDYPQPIVDHKEARLRTLAAYEEARK 470 >gi|15829987|ref|NP_308760.1| deoxyribodipyrimidine photolyase [Escherichia coli O157:H7 str. Sakai] gi|168750637|ref|ZP_02775659.1| deoxyribodipyrimidine photolyase [Escherichia coli O157:H7 str. EC4113] gi|168757158|ref|ZP_02782165.1| deoxyribodipyrimidine photolyase [Escherichia coli O157:H7 str. EC4401] gi|168763986|ref|ZP_02788993.1| deoxyribodipyrimidine photolyase [Escherichia coli O157:H7 str. EC4501] gi|168767146|ref|ZP_02792153.1| deoxyribodipyrimidine photolyase [Escherichia coli O157:H7 str. EC4486] gi|168777031|ref|ZP_02802038.1| deoxyribodipyrimidine photolyase [Escherichia coli O157:H7 str. EC4196] gi|168779189|ref|ZP_02804196.1| deoxyribodipyrimidine photolyase [Escherichia coli O157:H7 str. EC4076] gi|168786859|ref|ZP_02811866.1| deoxyribodipyrimidine photolyase [Escherichia coli O157:H7 str. EC869] gi|168801385|ref|ZP_02826392.1| deoxyribodipyrimidine photolyase [Escherichia coli O157:H7 str. EC508] gi|195939049|ref|ZP_03084431.1| deoxyribodipyrimidine photolyase [Escherichia coli O157:H7 str. EC4024] gi|208809646|ref|ZP_03251983.1| deoxyribodipyrimidine photolyase [Escherichia coli O157:H7 str. EC4206] gi|208815503|ref|ZP_03256682.1| deoxyribodipyrimidine photolyase [Escherichia coli O157:H7 str. EC4045] gi|208822977|ref|ZP_03263295.1| deoxyribodipyrimidine photolyase [Escherichia coli O157:H7 str. EC4042] gi|209397896|ref|YP_002269331.1| deoxyribodipyrimidine photolyase [Escherichia coli O157:H7 str. EC4115] gi|217325709|ref|ZP_03441793.1| deoxyribodipyrimidine photolyase [Escherichia coli O157:H7 str. TW14588] gi|254791854|ref|YP_003076691.1| deoxyribodipyrimidine photolyase [Escherichia coli O157:H7 str. TW14359] gi|261224409|ref|ZP_05938690.1| deoxyribodipyrimidine photolyase, FAD-binding protein [Escherichia coli O157:H7 str. FRIK2000] gi|261254600|ref|ZP_05947133.1| deoxyribodipyrimidine photolyase, FAD-binding protein [Escherichia coli O157:H7 str. FRIK966] gi|13360191|dbj|BAB34156.1| deoxyribodipyrimidine photolyase [Escherichia coli O157:H7 str. Sakai] gi|187767666|gb|EDU31510.1| deoxyribodipyrimidine photolyase [Escherichia coli O157:H7 str. EC4196] gi|188015195|gb|EDU53317.1| deoxyribodipyrimidine photolyase [Escherichia coli O157:H7 str. EC4113] gi|189003074|gb|EDU72060.1| deoxyribodipyrimidine photolyase [Escherichia coli O157:H7 str. EC4076] gi|189355803|gb|EDU74222.1| deoxyribodipyrimidine photolyase [Escherichia coli O157:H7 str. EC4401] gi|189363333|gb|EDU81752.1| deoxyribodipyrimidine photolyase [Escherichia coli O157:H7 str. EC4486] gi|189365922|gb|EDU84338.1| deoxyribodipyrimidine photolyase [Escherichia coli O157:H7 str. EC4501] gi|189373172|gb|EDU91588.1| deoxyribodipyrimidine photolyase [Escherichia coli O157:H7 str. EC869] gi|189376468|gb|EDU94884.1| deoxyribodipyrimidine photolyase [Escherichia coli O157:H7 str. EC508] gi|208729447|gb|EDZ79048.1| deoxyribodipyrimidine photolyase [Escherichia coli O157:H7 str. EC4206] gi|208732151|gb|EDZ80839.1| deoxyribodipyrimidine photolyase [Escherichia coli O157:H7 str. EC4045] gi|208737170|gb|EDZ84854.1| deoxyribodipyrimidine photolyase [Escherichia coli O157:H7 str. EC4042] gi|209159296|gb|ACI36729.1| deoxyribodipyrimidine photolyase [Escherichia coli O157:H7 str. EC4115] gi|209776598|gb|ACI86611.1| deoxyribodipyrimidine photolyase [Escherichia coli] gi|209776600|gb|ACI86612.1| deoxyribodipyrimidine photolyase [Escherichia coli] gi|209776602|gb|ACI86613.1| deoxyribodipyrimidine photolyase [Escherichia coli] gi|209776606|gb|ACI86615.1| deoxyribodipyrimidine photolyase [Escherichia coli] gi|217321930|gb|EEC30354.1| deoxyribodipyrimidine photolyase [Escherichia coli O157:H7 str. TW14588] gi|254591254|gb|ACT70615.1| deoxyribodipyrimidine photolyase, FAD-binding [Escherichia coli O157:H7 str. TW14359] gi|320193102|gb|EFW67742.1| Deoxyribodipyrimidine photolyase [Escherichia coli O157:H7 str. EC1212] gi|320637955|gb|EFX07724.1| deoxyribodipyrimidine photolyase [Escherichia coli O157:H7 str. G5101] gi|320643350|gb|EFX12530.1| deoxyribodipyrimidine photolyase [Escherichia coli O157:H- str. 493-89] gi|320648699|gb|EFX17332.1| deoxyribodipyrimidine photolyase [Escherichia coli O157:H- str. H 2687] gi|320664741|gb|EFX31879.1| deoxyribodipyrimidine photolyase [Escherichia coli O157:H7 str. LSU-61] gi|326341556|gb|EGD65346.1| Deoxyribodipyrimidine photolyase [Escherichia coli O157:H7 str. 1044] gi|326345773|gb|EGD69512.1| Deoxyribodipyrimidine photolyase [Escherichia coli O157:H7 str. 1125] Length = 472 Score = 532 bits (1371), Expect = e-149, Method: Compositional matrix adjust. Identities = 255/476 (53%), Positives = 336/476 (70%), Gaps = 9/476 (1%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M+ HLVW R DLR+ DN AL AAC NS A+++A++IATP QW H +S RQ+ I A L Sbjct: 1 MTTHLVWFRQDLRLHDNLALAAACRNSSARLLALYIATPRQWAAHNMSPRQAELINAQLN 60 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 +Q +L++KGI + + +F S+E + C + VT LFYN QYE+NE RD +E+ Sbjct: 61 GLQIALAEKGIPLLFREVDDFAASVEIVKQVCAENSVTHLFYNYQYEVNERARDVQVERT 120 Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 L++ V+C+ FDDSV+LPPG+++ +MYKV+TPF+ A ++ L + + P +R +G Sbjct: 121 LRN-VVCEGFDDSVILPPGAVMTGNHEMYKVFTPFKNAWLKRLREGMPECVAAPKVRSSG 179 Query: 187 PVTPSNIPRF-FDYPFQAIDPM-FPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244 + P+ P +YP Q+ D FP+ E+ A+ LR+FC+ Y +QRD PA++GTS+ Sbjct: 180 SIKPA--PSITLNYPRQSFDTAHFPVEEKAAIAQLRQFCQNGAGEYEQQRDFPAVEGTSR 237 Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFS-WLNELIWREFYRHLMAFYPSVCM 303 LS L+ G LSPRQC +RL E L GA S WLNELIWREFYRHLM +YPS+C Sbjct: 238 LSASLATGGLSPRQCLHRLLAEQPQAL---DGGAGSVWLNELIWREFYRHLMTYYPSLCK 294 Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363 PFI WT++++W + LQAW++G TG+PI+DAAMRQLN+ GWMHNRLRMITASFLVK Sbjct: 295 HCPFIAWTDRVQWQSNPAHLQAWQEGKTGYPIVDAAMRQLNSTGWMHNRLRMITASFLVK 354 Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423 DLL+DWR GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG++FD +G Sbjct: 355 DLLIDWREGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGEKFDREGE 414 Query: 424 FIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479 FIR WLPEL NVP + +H P W +K + L+YP PIV+HK+A TL Y AA+K Sbjct: 415 FIRQWLPELRNVPGKSVHEPWKWAEKAGVKLDYPQPIVEHKEARVQTLAAYEAARK 470 >gi|15800411|ref|NP_286423.1| deoxyribodipyrimidine photolyase [Escherichia coli O157:H7 EDL933] gi|12513619|gb|AAG55031.1|AE005249_2 deoxyribodipyrimidine photolyase (photoreactivation) [Escherichia coli O157:H7 str. EDL933] Length = 472 Score = 531 bits (1369), Expect = e-149, Method: Compositional matrix adjust. Identities = 255/476 (53%), Positives = 336/476 (70%), Gaps = 9/476 (1%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M+ HLVW R DLR+ DN AL AAC NS A+++A++IATP QW H +S RQ+ I A L Sbjct: 1 MTTHLVWFRQDLRLHDNLALAAACRNSSARLLALYIATPRQWAAHNMSPRQAELINAQLN 60 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 +Q +L++KGI + + +F S+E + C + VT LFYN QYE+NE RD +E+ Sbjct: 61 GLQIALAEKGIPLLFREVDDFAASVEIVKQVCAENSVTHLFYNYQYEVNERARDVQVERT 120 Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 L++ V+C+ FDDSV+LPPG+++ +MYKV+TPF+ A ++ L + + P +R +G Sbjct: 121 LRN-VVCEGFDDSVILPPGAVMTGNHEMYKVFTPFKNAWLKRLREGMPECVAAPKVRSSG 179 Query: 187 PVTPSNIPRF-FDYPFQAIDPM-FPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244 + P+ P +YP Q+ D FP+ E+ A+ LR+FC+ Y +QRD PA++GTS+ Sbjct: 180 SIKPA--PSITLNYPRQSFDTAHFPVEEKAAIAQLRQFCQNGAGEYEQQRDFPAVEGTSR 237 Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFS-WLNELIWREFYRHLMAFYPSVCM 303 LS L+ G LSPRQC +RL E L GA S WLNELIWREFYRHLM +YPS+C Sbjct: 238 LSASLATGGLSPRQCLHRLLAEQPQAL---DGGAGSVWLNELIWREFYRHLMTYYPSLCK 294 Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363 PFI WT++++W + LQAW++G TG+PI+DAAMRQLN+ GWMHNRLRMITASFLVK Sbjct: 295 HCPFIAWTDRVQWQXNPAHLQAWQEGKTGYPIVDAAMRQLNSTGWMHNRLRMITASFLVK 354 Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423 DLL+DWR GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG++FD +G Sbjct: 355 DLLIDWREGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGEKFDREGE 414 Query: 424 FIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479 FIR WLPEL NVP + +H P W +K + L+YP PIV+HK+A TL Y AA+K Sbjct: 415 FIRQWLPELRNVPGKSVHEPWKWAEKAGVKLDYPQPIVEHKEARVQTLAAYEAARK 470 >gi|222032448|emb|CAP75187.1| Deoxyribodipyrimidine photo-lyase [Escherichia coli LF82] gi|312945236|gb|ADR26063.1| deoxyribodipyrimidine photolyase [Escherichia coli O83:H1 str. NRG 857C] Length = 472 Score = 531 bits (1369), Expect = e-149, Method: Compositional matrix adjust. Identities = 252/476 (52%), Positives = 335/476 (70%), Gaps = 9/476 (1%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M+ HLVW R DLR DN AL AAC NS A+V+A++IATP QW H +S RQ+ I L Sbjct: 1 MTTHLVWFRQDLRQHDNLALAAACRNSSARVLALYIATPRQWAAHNVSPRQAELINTQLN 60 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 +Q +L++KGI + + +F S+E + C + R+T LFYN QYE+NE RD E+ Sbjct: 61 ALQNALAEKGIPLLFREVDDFAASVETVKQVCAENRITHLFYNYQYEVNERARDVQAERT 120 Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 L++ V+C+ FDDSV+LPPG+++ +MYKV+TPF+ A ++ L + + P +R +G Sbjct: 121 LRN-VVCEGFDDSVILPPGAVMTGNHEMYKVFTPFKNAWLKRLREGMPECVAAPKVRSSG 179 Query: 187 PVTPSNIPRF-FDYPFQAIDPM-FPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244 + P+ P +YP Q+ D FP+ E+ A+ LR+FC+ Y +QRD PA++GTS+ Sbjct: 180 SIEPA--PSITLNYPRQSFDTAHFPVEEKAAIAQLRQFCQNGAGEYEQQRDFPAVEGTSR 237 Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFS-WLNELIWREFYRHLMAFYPSVCM 303 LS L+ G LSPRQC +RL E L GA S WL+ELIWREFYRHLM +YPS+C Sbjct: 238 LSASLATGGLSPRQCLHRLLAEQPQAL---DGGAGSVWLSELIWREFYRHLMTYYPSLCK 294 Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363 +PFI WT++++W + L+AW++G TG+PI+DAAMRQLN+ GWMHNRLRMITASFLVK Sbjct: 295 HRPFIAWTDRVQWQSNPAHLKAWQEGKTGYPIVDAAMRQLNSTGWMHNRLRMITASFLVK 354 Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423 DLL+DWR GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG++FD +G Sbjct: 355 DLLIDWREGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGEKFDREGE 414 Query: 424 FIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479 FIR WLPEL +VP + +H P W +K ++L+YP PIVDHK+A TL Y A+K Sbjct: 415 FIRQWLPELRDVPGKAVHEPWKWAEKTGVTLDYPQPIVDHKEARLRTLAAYEEARK 470 >gi|170681516|ref|YP_001742812.1| deoxyribodipyrimidine photolyase [Escherichia coli SMS-3-5] gi|300937834|ref|ZP_07152629.1| FAD binding domain of DNA photolyase [Escherichia coli MS 21-1] gi|170519234|gb|ACB17412.1| deoxyribodipyrimidine photolyase [Escherichia coli SMS-3-5] gi|300457153|gb|EFK20646.1| FAD binding domain of DNA photolyase [Escherichia coli MS 21-1] Length = 472 Score = 531 bits (1368), Expect = e-149, Method: Compositional matrix adjust. Identities = 255/478 (53%), Positives = 336/478 (70%), Gaps = 9/478 (1%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M+ HLVW R DLR DN AL AAC NS +V+A++IATP QW H +S RQ+ FI A L Sbjct: 1 MTTHLVWFRQDLRQHDNLALAAACRNSSVRVLALYIATPRQWAAHNMSPRQAEFINAQLN 60 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 +Q +L++KGI +H+ +F S+E + C + RVT LFYN QYE+NE RD E+ Sbjct: 61 GLQIALAEKGIPLLFHEVDDFAASVEIVKQVCAENRVTHLFYNYQYEVNERARDVQAERA 120 Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 L++ V+C+ FDD V+LPPG+++ +MYKV+TPF+ A ++ L + + P +R +G Sbjct: 121 LRN-VVCEGFDDGVILPPGAVMTGNHEMYKVFTPFKNAWLKRLREGMPECVAAPKVRSSG 179 Query: 187 PVTPSNIPRF-FDYPFQAIDPM-FPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244 + P+ P +YP Q D FP+ E+ A+ LR+FC+ Y +QRD PA++GTS+ Sbjct: 180 SIDPA--PSITLNYPRQPFDTAHFPVEEKAAIAQLRQFCQNGAGEYEQQRDFPAVEGTSR 237 Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFS-WLNELIWREFYRHLMAFYPSVCM 303 LS L+ G LSPRQC +RL E L GA S WLNELIWREFYRHL+ +YPS+C Sbjct: 238 LSASLATGGLSPRQCLHRLLAEQPQAL---DGGAGSIWLNELIWREFYRHLITYYPSLCK 294 Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363 +PFI WT++++W +S L+AW++G TG+PI+DAAMRQLN+ GWMHNRLRMITASFLVK Sbjct: 295 HRPFIVWTDRVQWQSNSAHLKAWQEGKTGYPIVDAAMRQLNSTGWMHNRLRMITASFLVK 354 Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423 DLL+DWR GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG++FD +G Sbjct: 355 DLLIDWREGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGEKFDREGE 414 Query: 424 FIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481 FIR WLPEL +VP + +H P W K ++L+YP PIVDHK+A TL Y A+K + Sbjct: 415 FIRQWLPELRDVPGKVVHEPWKWAQKAGVTLDYPQPIVDHKEARLRTLAAYEEARKGA 472 >gi|325498130|gb|EGC95989.1| deoxyribodipyrimidine photolyase [Escherichia fergusonii ECD227] Length = 472 Score = 531 bits (1368), Expect = e-149, Method: Compositional matrix adjust. Identities = 256/478 (53%), Positives = 337/478 (70%), Gaps = 9/478 (1%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M+ HLVW R DLR+ DN AL AAC NS A V+A++IATP QW H +S RQ+ FI A L Sbjct: 1 MTTHLVWFRQDLRLHDNLALAAACRNSSAHVLALYIATPRQWAAHNMSPRQAEFINAQLN 60 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 +Q +L++KGI +H+ +F S+E + C + RVT LFYN QYE+NE RD +E+ Sbjct: 61 GLQIALAEKGIPLLFHEVDDFAASVEIVKQVCAENRVTHLFYNYQYEVNERARDVEVERA 120 Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 L++ V+C+ FDD V+LPPG+++ +MYKV+TPF+ A ++ L + + P +R +G Sbjct: 121 LRN-VVCEGFDDCVILPPGAVMTGNHEMYKVFTPFKNAWLKRLREGMPECVAAPKVRSSG 179 Query: 187 PVTPSNIPRF-FDYPFQAIDPM-FPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244 + P+ P +YP Q+ D FP+ E+ A+ LR+FC+ Y +QRD PA++GTS+ Sbjct: 180 SLDPA--PSITLNYPRQSFDTAHFPVEEKAAIAQLRQFCQNGASQYDQQRDFPAVEGTSR 237 Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFS-WLNELIWREFYRHLMAFYPSVCM 303 LS L+ G LSPRQC +RL E L GA S WLNELIWREFYRHLM ++PS+C Sbjct: 238 LSASLATGRLSPRQCLHRLLAEQPQAL---DGGAGSVWLNELIWREFYRHLMTYHPSLCK 294 Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363 +PFI WT++++W + L+AW++G TG+PI+DAAMRQLN+ GWMHNRLRMITASFLVK Sbjct: 295 HRPFIAWTDRVQWQSNPAHLKAWQEGKTGYPIVDAAMRQLNSTGWMHNRLRMITASFLVK 354 Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423 DLL+DWR GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG++FD +G Sbjct: 355 DLLIDWREGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGEKFDHEGE 414 Query: 424 FIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481 FIR WLPEL +VP + +H P W K + L+YP PIVDHK+A TL Y AKK + Sbjct: 415 FIRQWLPELRDVPGKAVHEPWKWAQKAGVMLDYPQPIVDHKEARLRTLAAYEEAKKGA 472 >gi|224582537|ref|YP_002636335.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|224467064|gb|ACN44894.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|322713765|gb|EFZ05336.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp. enterica serovar Choleraesuis str. A50] Length = 473 Score = 531 bits (1368), Expect = e-148, Method: Compositional matrix adjust. Identities = 253/477 (53%), Positives = 338/477 (70%), Gaps = 6/477 (1%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M HLVW R DLR+ DN AL AAC ++ A+V+A++I+TP QW+ H ++ RQ+ FI A L Sbjct: 1 MPTHLVWFRRDLRLQDNLALAAACRDASARVLALYISTPAQWQAHDMAPRQAAFISAQLN 60 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 +Q +L++KGI +H+ ++F+ SIE + ++C Q V+ LFYN QY+ NE +RD +EK Sbjct: 61 ALQAALAEKGIPLLFHEVADFNASIETVKNFCRQHDVSHLFYNYQYQFNERQRDAAVEKT 120 Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 L VIC+ FDDSV+L PG+++ +MYKV+TPF+ A ++ L + +P P IR++G Sbjct: 121 LPS-VICEGFDDSVILAPGAVMTGNHEMYKVFTPFKNAWLKRLKEDIPPCVPAPKIRVSG 179 Query: 187 PVTPSNIPRFFDYPFQAIDP-MFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245 ++ P +YP QA D +FP+ E + LR+FC + Y +RD PA+ GTS+L Sbjct: 180 ALSTPLTPVSLNYPQQAFDAALFPVEENAVIAQLRQFCAQGADEYALRRDFPAVDGTSRL 239 Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFS-WLNELIWREFYRHLMAFYPSVCMG 304 S L+ G LSPRQC +RL E L G S WLNELIWREFYRHLM +YP++C Sbjct: 240 SASLATGGLSPRQCLHRLLAEQPQAL---DGGPGSVWLNELIWREFYRHLMTWYPALCKH 296 Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364 +PFI WT+++ W ++SH QAW++G TG+PI+DAAMRQLN GWMHNRLRMITASFLVKD Sbjct: 297 QPFIRWTKRVAWQENSHYFQAWQKGETGYPIVDAAMRQLNATGWMHNRLRMITASFLVKD 356 Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424 LL+DWR+GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG+RFD G F Sbjct: 357 LLIDWRLGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGERFDRDGEF 416 Query: 425 IRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481 IR WLP L ++P + IH P W +K + L+YP PIV+HK+A TL+ Y AA+K + Sbjct: 417 IRQWLPALRDIPGKAIHEPWRWAEKAGVVLDYPRPIVEHKQARIATLSAYEAARKGA 473 >gi|91209744|ref|YP_539730.1| deoxyribodipyrimidine photolyase [Escherichia coli UTI89] gi|91071318|gb|ABE06199.1| deoxyribodipyrimidine photolyase [Escherichia coli UTI89] Length = 472 Score = 531 bits (1367), Expect = e-148, Method: Compositional matrix adjust. Identities = 252/476 (52%), Positives = 335/476 (70%), Gaps = 9/476 (1%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M+ HLVW R DLR DN AL AAC NS A+V+A++IATP QW H +S RQ+ I L Sbjct: 1 MTTHLVWFRQDLRQHDNLALAAACRNSSARVLALYIATPRQWAAHNVSPRQAELINTQLN 60 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 +Q +L++KGI + + +F S+E + C + R+T LFYN QYE+NE RD E+ Sbjct: 61 ALQNALAEKGIPLLFREVDDFAASVETVKQMCAENRITHLFYNYQYEVNERARDVQAERT 120 Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 L++ V+C+ FDDSV+LPPG+++ +MYKV+TPF+ A ++ L + + P R +G Sbjct: 121 LRN-VVCEGFDDSVILPPGAVMTGNHEMYKVFTPFKNAWLKRLREGMPECVAAPKFRSSG 179 Query: 187 PVTPSNIPRF-FDYPFQAIDPM-FPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244 + P+ P +YP Q+ D FP+ E+ A+ LR+FC+ Y +QRD PA++GTS+ Sbjct: 180 SIEPA--PSITLNYPRQSFDTAHFPVEEKAAIAQLRQFCQNGAGEYEQQRDFPAVEGTSR 237 Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFS-WLNELIWREFYRHLMAFYPSVCM 303 LS L+ G LSPRQC +RL E +L + G S WLNELIWREFYRHLM +YPS+C Sbjct: 238 LSASLATGGLSPRQCLHRLLAEQPQVL---EGGPGSVWLNELIWREFYRHLMTYYPSLCK 294 Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363 +PFI WT++++W + L+AW++G TG+PI+DAAMRQLN+ GWMHNRLRMITASFLVK Sbjct: 295 HRPFIAWTDRVQWQSNPAHLKAWQEGKTGYPIVDAAMRQLNSTGWMHNRLRMITASFLVK 354 Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423 DLL+DWR GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG++FD +G Sbjct: 355 DLLIDWREGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGEKFDREGE 414 Query: 424 FIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479 FIR WLPEL +VP + +H P W +K ++L+YP PIVDHK+A TL Y A+K Sbjct: 415 FIRQWLPELRDVPGKAVHEPWKWAEKTGVTLDYPQPIVDHKEARLRTLAAYEEARK 470 >gi|110640918|ref|YP_668646.1| deoxyribodipyrimidine photolyase [Escherichia coli 536] gi|191174072|ref|ZP_03035588.1| deoxyribodipyrimidine photolyase [Escherichia coli F11] gi|300996480|ref|ZP_07181454.1| FAD binding domain of DNA photolyase [Escherichia coli MS 200-1] gi|110342510|gb|ABG68747.1| deoxyribodipyrimidine photolyase [Escherichia coli 536] gi|190905680|gb|EDV65303.1| deoxyribodipyrimidine photolyase [Escherichia coli F11] gi|300304534|gb|EFJ59054.1| FAD binding domain of DNA photolyase [Escherichia coli MS 200-1] gi|324010431|gb|EGB79650.1| FAD binding domain of DNA photolyase [Escherichia coli MS 60-1] Length = 472 Score = 531 bits (1367), Expect = e-148, Method: Compositional matrix adjust. Identities = 253/478 (52%), Positives = 337/478 (70%), Gaps = 9/478 (1%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M+ HLVW R DLR+ DN AL AAC NS A+V+A++IATP QW H +S RQ+ I L Sbjct: 1 MTTHLVWFRQDLRLHDNLALAAACRNSSARVLALYIATPRQWAAHNVSPRQAELINTQLN 60 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 +Q +L++KGI + + +F S+E + C + RVT LFYN QYE+NE RD E+ Sbjct: 61 ALQIALAEKGIPLLFREVDDFAASVEIVKQVCAEYRVTHLFYNYQYEVNERARDVQAERT 120 Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 L++ V+C+ FDDSV+LPPG+++ +MYKV+TPF+ A ++ L + + P +R +G Sbjct: 121 LRN-VVCEGFDDSVILPPGAVMTGNHEMYKVFTPFKNAWLKRLREGMPECVAAPKVRSSG 179 Query: 187 PVTPSNIPRF-FDYPFQAIDPM-FPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244 + P+ P +YP Q+ D FP+ E+ A+ LR+FC Y +QRD PA++GTS+ Sbjct: 180 SIEPA--PSITLNYPRQSFDTAHFPVEEKAAIAQLRQFCLNGAGEYEQQRDFPAVEGTSR 237 Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFS-WLNELIWREFYRHLMAFYPSVCM 303 LS L+ G LSPRQC +RL E +L + G S WLNELIWREFYRHLM +YPS+C Sbjct: 238 LSASLATGGLSPRQCLHRLLAEQPQVL---EGGPGSVWLNELIWREFYRHLMTYYPSLCK 294 Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363 +PFI WT++++W + L+AW++G TG+PI+DAAMRQLN+ GWMHNRLRMITASFLVK Sbjct: 295 HRPFIAWTDRVQWQSNPAHLKAWQEGKTGYPIVDAAMRQLNSTGWMHNRLRMITASFLVK 354 Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423 DLL+DWR GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG++FD +G Sbjct: 355 DLLIDWREGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGEKFDREGE 414 Query: 424 FIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481 FIR WLPEL +VP + +H P W +K ++L+YP PIVDHK+A TL Y A+K + Sbjct: 415 FIRQWLPELRDVPGKAVHEPWKWAEKTGVTLDYPQPIVDHKEARLRTLAAYEEARKGA 472 >gi|170769095|ref|ZP_02903548.1| deoxyribodipyrimidine photolyase [Escherichia albertii TW07627] gi|170122167|gb|EDS91098.1| deoxyribodipyrimidine photolyase [Escherichia albertii TW07627] Length = 472 Score = 531 bits (1367), Expect = e-148, Method: Compositional matrix adjust. Identities = 254/476 (53%), Positives = 339/476 (71%), Gaps = 9/476 (1%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M++HLVW R DLR+ DN AL AC NS A+V+A++IATP QW H +S RQ+ FI A L Sbjct: 1 MTIHLVWFRQDLRLHDNLALAVACRNSSARVLALYIATPCQWAAHSMSPRQAEFINAQLN 60 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 +Q +L++KGI + + +F S+E + C + RVT LFYN QYE+NE RD +E+ Sbjct: 61 GLQIALAEKGIPLLFREVDDFAASVEIVKQVCAENRVTHLFYNYQYEVNERARDVQVERA 120 Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 L++ V+C+ FDDSV+LPPG+++ +MYKV+TPF+ A ++ L + + P +R +G Sbjct: 121 LRN-VVCEGFDDSVILPPGAVMTGNHEMYKVFTPFKNAWLKRLREGMPECVAAPKVRSSG 179 Query: 187 PVTPSNIPRF-FDYPFQAIDPM-FPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244 + P+ P +YP Q+ D FP+ E+ A+ LR+FC+ V Y +QRD PA++GTS+ Sbjct: 180 SIDPA--PSITLNYPRQSFDTAHFPVEEKAAIAQLRQFCQNGVGQYEQQRDFPAVEGTSR 237 Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFS-WLNELIWREFYRHLMAFYPSVCM 303 LS L+ G SPRQC +RL E L + GA S WLNELIWREFYRHL+ +YP++C Sbjct: 238 LSASLATGGGSPRQCLHRLLAEQPQAL---EGGAGSVWLNELIWREFYRHLITYYPTLCK 294 Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363 +PFI WT++++W + L+AW++G TG+PI+DAAMRQLN+ GWMHNRLRMITASFLVK Sbjct: 295 HRPFIAWTDRVQWQSNPAHLKAWQEGKTGYPIVDAAMRQLNSTGWMHNRLRMITASFLVK 354 Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423 DLL+DWR GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG++FD +G Sbjct: 355 DLLIDWREGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGEKFDHEGE 414 Query: 424 FIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479 FIR WLPEL +VP + +H P W K + L+YP PIVDHK+A TL Y AA+K Sbjct: 415 FIRQWLPELRDVPGKAVHEPWKWAQKAGVRLDYPEPIVDHKEARLRTLAAYEAARK 470 >gi|117622905|ref|YP_851818.1| deoxyribodipyrimidine photolyase [Escherichia coli APEC O1] gi|218557628|ref|YP_002390541.1| deoxyribodipyrimidine photolyase [Escherichia coli S88] gi|237707328|ref|ZP_04537809.1| deoxyribodipyrimidine photolyase [Escherichia sp. 3_2_53FAA] gi|115512029|gb|ABJ00104.1| deoxyribodipyrimidine photolyase [Escherichia coli APEC O1] gi|218364397|emb|CAR02076.1| deoxyribodipyrimidine photolyase, FAD-binding [Escherichia coli S88] gi|226898538|gb|EEH84797.1| deoxyribodipyrimidine photolyase [Escherichia sp. 3_2_53FAA] gi|294490015|gb|ADE88771.1| deoxyribodipyrimidine photo-lyase [Escherichia coli IHE3034] gi|307627874|gb|ADN72178.1| deoxyribodipyrimidine photolyase [Escherichia coli UM146] gi|315287176|gb|EFU46588.1| FAD binding domain of DNA photolyase [Escherichia coli MS 110-3] gi|320194132|gb|EFW68764.1| Deoxyribodipyrimidine photolyase [Escherichia coli WV_060327] gi|323952730|gb|EGB48598.1| DNA photolyase [Escherichia coli H252] gi|323958455|gb|EGB54161.1| DNA photolyase [Escherichia coli H263] Length = 472 Score = 530 bits (1366), Expect = e-148, Method: Compositional matrix adjust. Identities = 252/476 (52%), Positives = 335/476 (70%), Gaps = 9/476 (1%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M+ HLVW R DLR DN AL AAC NS A+V+A++IATP QW H +S RQ+ I L Sbjct: 1 MTTHLVWFRQDLRQHDNLALAAACRNSSARVLALYIATPRQWAAHNVSPRQAELINTQLN 60 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 +Q +L++KGI + + +F S+E + C + R+T LFYN QYE+NE RD E+ Sbjct: 61 ALQNALAEKGIPLLFREVDDFAASVETVKQVCAENRITHLFYNYQYEVNERARDVQAERT 120 Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 L++ V+C+ FDDSV+LPPG+++ +MYKV+TPF+ A ++ L + + P R +G Sbjct: 121 LRN-VVCEGFDDSVILPPGAVMTGNHEMYKVFTPFKNAWLKRLREGMPECVAAPKFRSSG 179 Query: 187 PVTPSNIPRF-FDYPFQAIDPM-FPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244 + P+ P +YP Q+ D FP+ E+ A+ LR+FC+ Y +QRD PA++GTS+ Sbjct: 180 SIEPA--PSITLNYPRQSFDTAHFPVEEKAAIAQLRQFCQNGAGEYEQQRDFPAVEGTSR 237 Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFS-WLNELIWREFYRHLMAFYPSVCM 303 LS L+ G LSPRQC +RL E +L + G S WLNELIWREFYRHLM +YPS+C Sbjct: 238 LSASLATGGLSPRQCLHRLLAEQPQVL---EGGPGSVWLNELIWREFYRHLMTYYPSLCK 294 Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363 +PFI WT++++W + L+AW++G TG+PI+DAAMRQLN+ GWMHNRLRMITASFLVK Sbjct: 295 HRPFIAWTDRVQWQSNPAHLKAWQEGKTGYPIVDAAMRQLNSTGWMHNRLRMITASFLVK 354 Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423 DLL+DWR GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG++FD +G Sbjct: 355 DLLIDWREGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGEKFDREGE 414 Query: 424 FIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479 FIR WLPEL +VP + +H P W +K ++L+YP PIVDHK+A TL Y A+K Sbjct: 415 FIRQWLPELRDVPGKAVHEPWKWAEKTGVTLDYPQPIVDHKEARLRTLAAYEEARK 470 >gi|168238850|ref|ZP_02663908.1| deoxyribodipyrimidine photo-lyase (DNA photolyase) [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|194736598|ref|YP_002113816.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|194712100|gb|ACF91321.1| deoxyribodipyrimidine photo-lyase [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|197288345|gb|EDY27726.1| deoxyribodipyrimidine photo-lyase (DNA photolyase) [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] Length = 473 Score = 530 bits (1366), Expect = e-148, Method: Compositional matrix adjust. Identities = 254/477 (53%), Positives = 336/477 (70%), Gaps = 6/477 (1%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M HLVW R DLR+ DN AL AAC ++ A+V+A++I+TP QW+ H ++ RQ+ FI A L Sbjct: 1 MPTHLVWFRRDLRLQDNLALAAACRDASARVLALYISTPAQWQAHDMAPRQAAFISAQLN 60 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 +Q +L++KGI +H+ ++F+ SIE + + C Q V+ LFYN QYE NE +RD +EK Sbjct: 61 ALQTALAEKGIPLLFHEVADFNASIETVKNVCRQHDVSHLFYNYQYEFNERQRDAAVEKT 120 Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 L VIC+ FDDSV+L PG+++ +MYKV+TPF+ A ++ L + +P P IR++G Sbjct: 121 LPS-VICEGFDDSVILAPGAVMTGNHEMYKVFTPFKNAWLKRLKEDIPPCVPAPKIRVSG 179 Query: 187 PVTPSNIPRFFDYPFQAIDP-MFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245 ++ P +YP QA D +FP+ E + LR+FC + Y QRD PA+ GTS+L Sbjct: 180 ALSTPLTPVSLNYPQQAFDAALFPVEENAVIAQLRQFCAQGADEYESQRDFPAVDGTSRL 239 Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFS-WLNELIWREFYRHLMAFYPSVCMG 304 S L+ G LSPRQC +RL E L G S WLNELIWREFYRHLM +YP++C Sbjct: 240 SASLATGGLSPRQCLHRLLAEQPQAL---DGGPGSVWLNELIWREFYRHLMTWYPALCKH 296 Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364 +PFI WT+++ W ++ H QAW++G TG+PI+DAAMRQLN GWMHNRLRMITASFLVKD Sbjct: 297 QPFIRWTKRVAWQENPHYFQAWQKGETGYPIVDAAMRQLNATGWMHNRLRMITASFLVKD 356 Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424 LL+DWR+GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG+RFD G F Sbjct: 357 LLIDWRLGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGERFDRDGEF 416 Query: 425 IRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481 IR WLP L ++P + IH P W +K + L+YP PIV+HK+A TL+ Y AA+K + Sbjct: 417 IRQWLPALRDIPGKAIHEPWRWAEKAGVVLDYPRPIVEHKQARIATLSAYEAARKGA 473 >gi|16128683|ref|NP_415236.1| deoxyribodipyrimidine photolyase, FAD-binding [Escherichia coli str. K-12 substr. MG1655] gi|89107566|ref|AP_001346.1| deoxyribodipyrimidine photolyase, FAD-binding [Escherichia coli str. K-12 substr. W3110] gi|157160187|ref|YP_001457505.1| deoxyribodipyrimidine photolyase [Escherichia coli HS] gi|170080375|ref|YP_001729695.1| deoxyribodipyrimidine photolyase, FAD-binding [Escherichia coli str. K-12 substr. DH10B] gi|188495323|ref|ZP_03002593.1| deoxyribodipyrimidine photolyase [Escherichia coli 53638] gi|238899973|ref|YP_002925769.1| deoxyribodipyrimidine photolyase, FAD-binding [Escherichia coli BW2952] gi|256023690|ref|ZP_05437555.1| deoxyribodipyrimidine photolyase [Escherichia sp. 4_1_40B] gi|300947213|ref|ZP_07161423.1| FAD binding domain of DNA photolyase [Escherichia coli MS 116-1] gi|301027120|ref|ZP_07190490.1| FAD binding domain of DNA photolyase [Escherichia coli MS 196-1] gi|307137319|ref|ZP_07496675.1| deoxyribodipyrimidine photolyase [Escherichia coli H736] gi|331641209|ref|ZP_08342344.1| deoxyribodipyrimidine photo-lyase (DNA photolyase)(Photoreactivating enzyme) [Escherichia coli H736] gi|130152|sp|P00914|PHR_ECOLI RecName: Full=Deoxyribodipyrimidine photo-lyase; AltName: Full=DNA photolyase; AltName: Full=Photoreactivating enzyme gi|147268|gb|AAA24388.1| deoxyribopyrimidine photolyase [Escherichia coli] gi|1651311|dbj|BAA35367.1| deoxyribodipyrimidine photolyase, FAD-binding [Escherichia coli str. K12 substr. W3110] gi|1786926|gb|AAC73802.1| deoxyribodipyrimidine photolyase, FAD-binding [Escherichia coli str. K-12 substr. MG1655] gi|6006450|emb|CAB56782.1| DNA photolyase [Escherichia coli str. K-12 substr. W3110] gi|157065867|gb|ABV05122.1| deoxyribodipyrimidine photolyase [Escherichia coli HS] gi|169888210|gb|ACB01917.1| deoxyribodipyrimidine photolyase, FAD-binding [Escherichia coli str. K-12 substr. DH10B] gi|188490522|gb|EDU65625.1| deoxyribodipyrimidine photolyase [Escherichia coli 53638] gi|238860746|gb|ACR62744.1| deoxyribodipyrimidine photolyase, FAD-binding [Escherichia coli BW2952] gi|260450139|gb|ACX40561.1| Deoxyribodipyrimidine photo-lyase [Escherichia coli DH1] gi|299879409|gb|EFI87620.1| FAD binding domain of DNA photolyase [Escherichia coli MS 196-1] gi|300453199|gb|EFK16819.1| FAD binding domain of DNA photolyase [Escherichia coli MS 116-1] gi|309700930|emb|CBJ00227.1| deoxyribodipyrimidine photolyase [Escherichia coli ETEC H10407] gi|315135364|dbj|BAJ42523.1| deoxyribodipyrimidine photolyase [Escherichia coli DH1] gi|315614653|gb|EFU95294.1| deoxyribodipyrimidine photo-lyase [Escherichia coli 3431] gi|323938286|gb|EGB34543.1| DNA photolyase [Escherichia coli E1520] gi|323942969|gb|EGB39132.1| DNA photolyase [Escherichia coli E482] gi|331038007|gb|EGI10227.1| deoxyribodipyrimidine photo-lyase (DNA photolyase)(Photoreactivating enzyme) [Escherichia coli H736] gi|332342043|gb|AEE55377.1| deoxyribodipyrimidine photo-lyase [Escherichia coli UMNK88] Length = 472 Score = 530 bits (1366), Expect = e-148, Method: Compositional matrix adjust. Identities = 254/476 (53%), Positives = 337/476 (70%), Gaps = 9/476 (1%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M+ HLVW R DLR+ DN AL AAC NS A+V+A++IATP QW H +S RQ+ I A L Sbjct: 1 MTTHLVWFRQDLRLHDNLALAAACRNSSARVLALYIATPRQWATHNMSPRQAELINAQLN 60 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 +Q +L++KGI + + +F S+E + C + VT LFYN QYE+NE RD +E+ Sbjct: 61 GLQIALAEKGIPLLFREVDDFVASVEIVKQVCAENSVTHLFYNYQYEVNERARDVEVERA 120 Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 L++ V+C+ FDDSV+LPPG+++ +MYKV+TPF+ A ++ L + + P +R +G Sbjct: 121 LRN-VVCEGFDDSVILPPGAVMTGNHEMYKVFTPFKNAWLKRLREGMPECVAAPKVRSSG 179 Query: 187 PVTPSNIPRF-FDYPFQAIDPM-FPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244 + PS P +YP Q+ D FP+ E+ A+ LR+FC+ Y +QRD PA++GTS+ Sbjct: 180 SIEPS--PSITLNYPRQSFDTAHFPVEEKAAIAQLRQFCQNGAGEYEQQRDFPAVEGTSR 237 Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFS-WLNELIWREFYRHLMAFYPSVCM 303 LS L+ G LSPRQC +RL E L GA S WLNELIWREFYRHL+ ++PS+C Sbjct: 238 LSASLATGGLSPRQCLHRLLAEQPQAL---DGGAGSVWLNELIWREFYRHLITYHPSLCK 294 Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363 +PFI WT++++W + LQAW++G TG+PI+DAAMRQLN+ GWMHNRLRMITASFLVK Sbjct: 295 HRPFIAWTDRVQWQSNPAHLQAWQEGKTGYPIVDAAMRQLNSTGWMHNRLRMITASFLVK 354 Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423 DLL+DWR GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG++FD +G Sbjct: 355 DLLIDWREGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGEKFDHEGE 414 Query: 424 FIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479 FIR WLPEL +VP + +H P W K ++L+YP PIV+HK+A TL Y AA+K Sbjct: 415 FIRQWLPELRDVPGKVVHEPWKWAQKAGVTLDYPQPIVEHKEARVQTLAAYEAARK 470 >gi|168264324|ref|ZP_02686297.1| deoxyribodipyrimidine photo-lyase [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|205347157|gb|EDZ33788.1| deoxyribodipyrimidine photo-lyase [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] Length = 473 Score = 530 bits (1366), Expect = e-148, Method: Compositional matrix adjust. Identities = 253/477 (53%), Positives = 336/477 (70%), Gaps = 6/477 (1%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M HLVW R DLR+ DN AL AAC ++ A+V+A++I+TP QW+ H ++ RQ+ FI A L Sbjct: 1 MPTHLVWFRRDLRLQDNLALAAACRDASARVLALYISTPAQWQAHDMAPRQAAFISAQLN 60 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 +Q +L++KGI +H+ ++F+ SIE + + C Q V+ LFYN QYE NE +RD +EK Sbjct: 61 ALQAALAEKGIPLLFHEVADFNASIETVKNVCRQHDVSHLFYNYQYEFNERQRDAAVEKT 120 Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 L VIC+ FDDSV+L PG+++ +MYKV+TPF+ A ++ L + +P P IR++G Sbjct: 121 LPS-VICEGFDDSVILAPGAVMTGNHEMYKVFTPFKNAWLKRLKEDIPPCVPAPKIRVSG 179 Query: 187 PVTPSNIPRFFDYPFQAIDP-MFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245 ++ P +YP QA D +FP+ E + LR+FC + Y +RD PA+ GTS+L Sbjct: 180 ALSTPLTPVSLNYPQQAFDAALFPVEENAVIAQLRQFCAQGADEYALRRDFPAVDGTSRL 239 Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFS-WLNELIWREFYRHLMAFYPSVCMG 304 S L+ G LSPRQC +RL E L G S WLNELIWREFYRHLM +YP++C Sbjct: 240 SASLATGGLSPRQCLHRLLAELPQAL---DGGPGSVWLNELIWREFYRHLMTWYPALCKH 296 Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364 +PFI WT+++ W ++ H QAW++G TG+PI+DAAMRQLN GWMHNRLRMITASFLVKD Sbjct: 297 QPFIRWTKRVAWQENPHYFQAWQKGETGYPIVDAAMRQLNATGWMHNRLRMITASFLVKD 356 Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424 LL+DWR+GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG+RFD G F Sbjct: 357 LLIDWRLGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGERFDRDGEF 416 Query: 425 IRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481 IR WLP L ++P + IH P W +K + L+YP PIV+HK+A TL+ Y AA+K + Sbjct: 417 IRQWLPALRDIPGKAIHEPWRWAEKAGVVLDYPRPIVEHKQARIATLSAYEAARKGA 473 >gi|288936505|ref|YP_003440564.1| deoxyribodipyrimidine photo-lyase [Klebsiella variicola At-22] gi|288891214|gb|ADC59532.1| Deoxyribodipyrimidine photo-lyase [Klebsiella variicola At-22] Length = 480 Score = 530 bits (1365), Expect = e-148, Method: Compositional matrix adjust. Identities = 257/474 (54%), Positives = 328/474 (69%), Gaps = 5/474 (1%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M+ HLVWLR DLRI DN AL AAC + A+V+A++IATP QWR+H ++ RQ+ FI + L Sbjct: 1 MATHLVWLRTDLRIHDNLALAAACRDPQAQVLALYIATPGQWREHHLAPRQAAFIVSHLH 60 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 + +L+++GI + +F S+E L +C Q +V+ LFYN QYE NE +RD +E Sbjct: 61 SLHTALAERGIPLWVEEAGDFTASVERLAHFCQQHQVSHLFYNYQYEFNERQRDAAVENT 120 Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 L+ VIC+ FDDSVLLPPGS++ + +MYKV+TPF+ A I+ L + P R Sbjct: 121 LRD-VICQGFDDSVLLPPGSVMTGSGEMYKVFTPFKNAFIRRLRDGLPACVAAPKPRQAP 179 Query: 187 PVTPSNIPRFFDYPFQAIDPM-FPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245 +P +YP D + F E+ AL LR FC++ Y QRD PA++GTS+L Sbjct: 180 ARQAPPLPEL-NYPQTPFDGLLFAADEKTALARLRAFCQQPAAEYEGQRDFPAVEGTSRL 238 Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305 SP L+ GVLSPRQC +RL E L +GA +WLNELIWREFYRHLM +YP +C G+ Sbjct: 239 SPCLATGVLSPRQCLHRLLTEHPAAL-DGGAGA-TWLNELIWREFYRHLMVYYPKLCKGR 296 Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365 PFI WT+K+ W +D LQAW++G TGFPI+DAAMRQLN GWMHNRLRMI ASFL KDL Sbjct: 297 PFIAWTDKVAWREDDAALQAWQRGETGFPIVDAAMRQLNATGWMHNRLRMIVASFLTKDL 356 Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425 +DWR GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG++FD QG F+ Sbjct: 357 RLDWRAGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGEKFDKQGVFM 416 Query: 426 RHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479 R WLPEL VP + +H P +W DK + L+YP PIVDHK+A TL + AA+K Sbjct: 417 RRWLPELAKVPEKALHQPWAWADKQGIKLDYPRPIVDHKQARQETLAAWEAARK 470 >gi|206580444|ref|YP_002239663.1| deoxyribodipyrimidine photo-lyase [Klebsiella pneumoniae 342] gi|206569502|gb|ACI11278.1| deoxyribodipyrimidine photo-lyase [Klebsiella pneumoniae 342] Length = 480 Score = 530 bits (1365), Expect = e-148, Method: Compositional matrix adjust. Identities = 257/474 (54%), Positives = 328/474 (69%), Gaps = 5/474 (1%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M+ HLVWLR DLRI DN AL AAC + A+V+A++IATP QWR+H ++ RQ+ FI + L Sbjct: 1 MATHLVWLRTDLRIHDNLALAAACRDPQAQVLALYIATPGQWREHHLAPRQAAFIASHLH 60 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 + +L+++GI + +F S+E L +C Q +V+ LFYN QYE NE +RD +E Sbjct: 61 SLHAALAERGIPLWVEEADDFTASVERLAHFCQQHQVSHLFYNYQYEFNERQRDAAVENT 120 Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 L+ VIC+ FDDSVLLPPGS++ + +MYKV+TPF+ A I+ L + P R Sbjct: 121 LRD-VICQGFDDSVLLPPGSVMTGSGEMYKVFTPFKNAFIRRLRDGLPACVAAPKPRQAP 179 Query: 187 PVTPSNIPRFFDYPFQAIDPM-FPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245 +P +YP D + F E+ AL LR FC++ Y QRD PA++GTS+L Sbjct: 180 ARQAPPLPEL-NYPQTPFDGLLFAADEKTALARLRAFCQQPAAEYEGQRDFPAVEGTSRL 238 Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305 SP L+ GVLSPRQC +RL E L +GA +WLNELIWREFYRHLM +YP +C G+ Sbjct: 239 SPCLATGVLSPRQCLHRLLTEHPAAL-DGGAGA-TWLNELIWREFYRHLMVYYPKLCKGR 296 Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365 PFI WT+K+ W +D LQAW++G TGFPI+DAAMRQLN GWMHNRLRMI ASFL KDL Sbjct: 297 PFIAWTDKVAWREDDAALQAWQRGETGFPIVDAAMRQLNATGWMHNRLRMIVASFLTKDL 356 Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425 +DWR GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG++FD QG F+ Sbjct: 357 RLDWRAGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGEKFDKQGVFM 416 Query: 426 RHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479 R WLPEL VP + +H P +W DK + L+YP PIVDHK+A TL + AA+K Sbjct: 417 RRWLPELAKVPEKALHQPWAWADKQGIKLDYPRPIVDHKQARQETLAAWEAARK 470 >gi|161615066|ref|YP_001589031.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|161364430|gb|ABX68198.1| hypothetical protein SPAB_02826 [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] Length = 500 Score = 530 bits (1365), Expect = e-148, Method: Compositional matrix adjust. Identities = 253/479 (52%), Positives = 337/479 (70%), Gaps = 6/479 (1%) Query: 5 TAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYAS 64 + M HLVW R DLR+ DN AL AAC ++ A+V+A++I+TP QW+ H ++ RQ+ FI A Sbjct: 26 SCMPTHLVWFRRDLRLQDNLALAAACRDASARVLALYISTPAQWQAHDMAPRQAAFISAQ 85 Query: 65 LLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLE 124 L +Q +L++KGI +H+ ++F+ SIE + + C Q V+ LFYN QYE NE +RD +E Sbjct: 86 LNALQAALAEKGIPLLFHEVADFNASIETVKNVCRQHDVSHLFYNYQYEFNERQRDAAVE 145 Query: 125 KRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL 184 K L VIC+ FDDSV+L PG+++ +MYKV+TPF+ A ++ L + +P P IR+ Sbjct: 146 KTLPS-VICEGFDDSVILAPGAVMTGNHEMYKVFTPFKNAWLKRLKEDIPPCVPAPKIRV 204 Query: 185 TGPVTPSNIPRFFDYPFQAIDP-MFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS 243 +G ++ P +YP QA D +FP+ E + LR+FC + Y +RD PA+ GTS Sbjct: 205 SGALSTPLTPVSLNYPQQAFDAALFPVEENAVIAQLRQFCAQGADGYESRRDFPAVDGTS 264 Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFS-WLNELIWREFYRHLMAFYPSVC 302 +LS L+ G LSPRQC +RL E L G S WLNELIWREFYRHLM +YP++C Sbjct: 265 RLSASLATGGLSPRQCLHRLLAEQPQAL---DGGPGSVWLNELIWREFYRHLMTWYPALC 321 Query: 303 MGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLV 362 +PFI WT+++ W ++ H QAW++G TG+PI+DAAMRQLN GWMHNRLRMITASFLV Sbjct: 322 KHQPFIRWTKRVAWQENPHYFQAWQKGETGYPIVDAAMRQLNATGWMHNRLRMITASFLV 381 Query: 363 KDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQG 422 KDLL+DWR+GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG+RFD G Sbjct: 382 KDLLIDWRLGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGERFDRDG 441 Query: 423 TFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481 FIR WLP L ++P + IH P W +K + L+YP PIV+HK+A TL+ Y AA+K + Sbjct: 442 EFIRQWLPALRDIPGKAIHEPWRWAEKAGVVLDYPRPIVEHKQARIATLSAYEAARKGA 500 >gi|283834013|ref|ZP_06353754.1| deoxyribodipyrimidine photolyase [Citrobacter youngae ATCC 29220] gi|291070150|gb|EFE08259.1| deoxyribodipyrimidine photolyase [Citrobacter youngae ATCC 29220] Length = 472 Score = 530 bits (1365), Expect = e-148, Method: Compositional matrix adjust. Identities = 255/476 (53%), Positives = 333/476 (69%), Gaps = 6/476 (1%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M+ HLVW R DLR+ DN AL AAC + A+V+A++IATP QW+ H ++ RQ+ F+ A L Sbjct: 1 MTTHLVWFRRDLRLHDNLALAAACRDRSAQVLALYIATPGQWQAHDMAPRQAAFVSAQLN 60 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 +Q +L++KGI +H+ ++F S++ + CLQ V++LFYN QYEINE +RD +EK Sbjct: 61 TLQTALAEKGIPLLFHEVADFAASVDTVKRVCLQHGVSRLFYNYQYEINERQRDANVEKS 120 Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 L +V+C+ FDDSV+LPPG+++ +MYKV+TPF+ A ++ + + P R +G Sbjct: 121 LP-QVVCEGFDDSVILPPGAVMTGNHEMYKVFTPFKNAWLKRIKDGIPECVSAPKERASG 179 Query: 187 PVTPSNIPRFFDYPFQAIDPM-FPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245 + YP Q D FP E+ A+ LR+FC++ Y ++RD PAI GTS+L Sbjct: 180 ALDAPLTAITLSYPQQEFDAQWFPADEKLAIAQLRQFCQQAAGEYEQRRDFPAINGTSRL 239 Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFS-WLNELIWREFYRHLMAFYPSVCMG 304 S L+ G LSPRQC NRL E L + GA S WLNELIWREFYRHLM ++P++C Sbjct: 240 SASLATGGLSPRQCLNRLLAEQPQAL---EGGAGSVWLNELIWREFYRHLMTYHPALCRH 296 Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364 +PFI WTE+++W + LQAW+ G TG+PI+DAAMRQLN GWMHNRLRMI ASFLVKD Sbjct: 297 QPFIRWTERVQWQNNPAHLQAWQTGKTGYPIVDAAMRQLNATGWMHNRLRMIAASFLVKD 356 Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424 LL+DWR GE+YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG++FD G F Sbjct: 357 LLIDWRKGEQYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGEKFDRDGEF 416 Query: 425 IRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQ 480 IR WLPEL NVP + IH P SW + +LNYP PIVDHK+A TL Y AA+K+ Sbjct: 417 IRQWLPELRNVPGKAIHNPWSWAENAQATLNYPRPIVDHKQARLATLAAYEAARKE 472 >gi|218704025|ref|YP_002411544.1| deoxyribodipyrimidine photolyase [Escherichia coli UMN026] gi|293403952|ref|ZP_06647946.1| deoxyribodipyrimidine photolyase [Escherichia coli FVEC1412] gi|298379728|ref|ZP_06989333.1| deoxyribodipyrimidine photo-lyase [Escherichia coli FVEC1302] gi|300900701|ref|ZP_07118851.1| FAD binding domain of DNA photolyase [Escherichia coli MS 198-1] gi|218431122|emb|CAR11998.1| deoxyribodipyrimidine photolyase, FAD-binding [Escherichia coli UMN026] gi|291428538|gb|EFF01563.1| deoxyribodipyrimidine photolyase [Escherichia coli FVEC1412] gi|298279426|gb|EFI20934.1| deoxyribodipyrimidine photo-lyase [Escherichia coli FVEC1302] gi|300355813|gb|EFJ71683.1| FAD binding domain of DNA photolyase [Escherichia coli MS 198-1] Length = 472 Score = 530 bits (1365), Expect = e-148, Method: Compositional matrix adjust. Identities = 254/478 (53%), Positives = 338/478 (70%), Gaps = 9/478 (1%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M+ HLVW R DLR+ DN AL AAC NS A+V+A++IATP QW H +S RQ+ I A L Sbjct: 1 MTTHLVWFRQDLRLHDNLALAAACRNSSARVLALYIATPRQWATHNMSPRQAKLINAQLN 60 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 ++ +L++KGI + + +F S+E + C + VT LFYN QYE+NE RD +E+ Sbjct: 61 GLRIALAEKGIPLLFREVDDFAASVEIIKQVCAENSVTHLFYNYQYEVNERARDVEVERA 120 Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 L++ V+C+ FDDSV+LPPG+++ +MYKV+TPF+ A ++ L + + P +R +G Sbjct: 121 LRN-VVCEGFDDSVILPPGAVMTGNHEMYKVFTPFKNAWLKRLREGMPECVAAPKVRSSG 179 Query: 187 PVTPSNIPRF-FDYPFQAIDPM-FPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244 + P+ P +YP Q D FP+ E+ A+ LR+FC+ Y +QRD PA++GTS+ Sbjct: 180 MIEPA--PSITLNYPRQPFDTAHFPVEEKAAIAQLRQFCQSGAGEYEQQRDFPAVEGTSR 237 Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFS-WLNELIWREFYRHLMAFYPSVCM 303 LS L+ G LSPRQC +RL E L + GA S WLNELIWREFYRHLM +YPS+C Sbjct: 238 LSASLATGGLSPRQCLHRLLAEQPQAL---EGGAGSVWLNELIWREFYRHLMTYYPSLCK 294 Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363 +PFI WT++++W ++ LQAW++G TG+PI+DAAMRQLN+ GWMHNRLRMITASFLVK Sbjct: 295 HRPFIVWTDRVQWQRNPAHLQAWQEGKTGYPIVDAAMRQLNSTGWMHNRLRMITASFLVK 354 Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423 DLL+DWR GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG++FD +G Sbjct: 355 DLLIDWREGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGEKFDREGE 414 Query: 424 FIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481 FIR WLPEL +VP + +H P W K ++L+YP PIVDHK+A TL Y A+K + Sbjct: 415 FIRRWLPELRDVPGKAVHEPWKWAQKAGVTLDYPQPIVDHKEARLRTLAAYEEARKGA 472 >gi|238911653|ref|ZP_04655490.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp. enterica serovar Tennessee str. CDC07-0191] Length = 473 Score = 530 bits (1364), Expect = e-148, Method: Compositional matrix adjust. Identities = 253/477 (53%), Positives = 337/477 (70%), Gaps = 6/477 (1%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M HLVW R DLR+ DN AL AAC ++ A+V+A++I+TP QW+ H ++ RQ+ FI A L Sbjct: 1 MPTHLVWFRRDLRLQDNLALAAACRDASARVLALYISTPAQWQAHDMAPRQAAFISAQLN 60 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 +Q +L++KGI +H+ ++F+ SI+ + + C Q V+ LFYN QYE NE +RD +EK Sbjct: 61 ALQTALAEKGIPLLFHEVADFNASIKTVKNICRQHDVSHLFYNYQYEFNERQRDAAVEKT 120 Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 L VIC+ FDDSV+L PG+++ +MYKV+TPF+ A ++ L + +P P IR++G Sbjct: 121 LPS-VICEGFDDSVILAPGAVMTGNHEMYKVFTPFKNAWLKRLKEDIPPCVPAPKIRVSG 179 Query: 187 PVTPSNIPRFFDYPFQAIDP-MFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245 ++ P +YP QA D +FP+ E + LR+FC + Y QRD PA++GTS+L Sbjct: 180 ALSTPLTPVSLNYPQQAFDAALFPVEENAVIAQLRQFCAQGADGYESQRDFPAVEGTSRL 239 Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFS-WLNELIWREFYRHLMAFYPSVCMG 304 S L+ G LSPRQC +RL E L G S WLNELIWREFYRHLM +YP++C Sbjct: 240 SASLATGGLSPRQCLHRLLAEQPQAL---DGGPGSVWLNELIWREFYRHLMTWYPALCKH 296 Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364 +PFI WT+++ W ++ H QAW++G TG+PI+DAAMRQLN GWMHNRLRMITASFLVKD Sbjct: 297 QPFIRWTKRVAWQENPHYFQAWQKGETGYPIVDAAMRQLNATGWMHNRLRMITASFLVKD 356 Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424 LL+DWR+GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG+RFD G F Sbjct: 357 LLIDWRLGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGERFDRDGEF 416 Query: 425 IRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481 IR WLP L ++P + IH P W +K + L+YP PIV+HK+A TL+ Y AA+K + Sbjct: 417 IRQWLPALRDIPGKAIHEPWRWAEKAGVVLDYPRPIVEHKQARIATLSAYEAARKGA 473 >gi|322615844|gb|EFY12762.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp. enterica serovar Montevideo str. 315996572] gi|322621240|gb|EFY18097.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-1] gi|322623660|gb|EFY20498.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-3] gi|322628932|gb|EFY25712.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-4] gi|322634912|gb|EFY31642.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-1] gi|322636560|gb|EFY33264.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-2] gi|322641813|gb|EFY38445.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp. enterica serovar Montevideo str. 531954] gi|322647801|gb|EFY44281.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp. enterica serovar Montevideo str. NC_MB110209-0054] gi|322651869|gb|EFY48238.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp. enterica serovar Montevideo str. OH_2009072675] gi|322652634|gb|EFY48983.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp. enterica serovar Montevideo str. CASC_09SCPH15965] gi|322658442|gb|EFY54705.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp. enterica serovar Montevideo str. 19N] gi|322664955|gb|EFY61146.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp. enterica serovar Montevideo str. 81038-01] gi|322668375|gb|EFY64531.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp. enterica serovar Montevideo str. MD_MDA09249507] gi|322670537|gb|EFY66670.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp. enterica serovar Montevideo str. 414877] gi|322675277|gb|EFY71353.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp. enterica serovar Montevideo str. 366867] gi|322679703|gb|EFY75744.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp. enterica serovar Montevideo str. 413180] gi|322684821|gb|EFY80820.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp. enterica serovar Montevideo str. 446600] gi|323200590|gb|EFZ85665.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp. enterica serovar Montevideo str. 556150-1] gi|323202262|gb|EFZ87310.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp. enterica serovar Montevideo str. 609460] gi|323205471|gb|EFZ90437.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp. enterica serovar Montevideo str. 507440-20] gi|323213490|gb|EFZ98283.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp. enterica serovar Montevideo str. 556152] gi|323215324|gb|EGA00069.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp. enterica serovar Montevideo str. MB101509-0077] gi|323220237|gb|EGA04693.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp. enterica serovar Montevideo str. MB102109-0047] gi|323231025|gb|EGA15141.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp. enterica serovar Montevideo str. MB111609-0052] gi|323234142|gb|EGA18231.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp. enterica serovar Montevideo str. 2009083312] gi|323238163|gb|EGA22221.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp. enterica serovar Montevideo str. 2009085258] gi|323243598|gb|EGA27616.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp. enterica serovar Montevideo str. 315731156] gi|323247378|gb|EGA31337.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2009159199] gi|323251366|gb|EGA35238.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008282] gi|323258495|gb|EGA42167.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008283] gi|323263118|gb|EGA46658.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008284] gi|323264721|gb|EGA48223.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008285] gi|323272232|gb|EGA55644.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008287] Length = 473 Score = 530 bits (1364), Expect = e-148, Method: Compositional matrix adjust. Identities = 254/477 (53%), Positives = 336/477 (70%), Gaps = 6/477 (1%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M HLVW R DLR+ DN AL AAC ++ A+V+A++I+TP QW+ H ++ RQ+ FI A L Sbjct: 1 MPTHLVWFRRDLRLQDNLALAAACRDASARVLALYISTPAQWQAHDMAPRQAAFISAQLN 60 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 +Q +L++KGI +H+ ++F SIE + + C Q V+ LFYN QYE NE +RD +EK Sbjct: 61 ALQTALAEKGIPLLFHEVADFSASIETVKNVCRQHDVSHLFYNYQYEFNERQRDAAVEKT 120 Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 L VIC+ FDDSV+L PG+++ +MYKV+TPF+ A ++ L + +P P IR++G Sbjct: 121 LPS-VICEGFDDSVILAPGAVMTGNHEMYKVFTPFKNAWLKRLKEDIPPCVPAPKIRVSG 179 Query: 187 PVTPSNIPRFFDYPFQAIDP-MFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245 ++ P +YP QA D +FP+ E + LR+FC + Y +RD PA+ GTS+L Sbjct: 180 ALSTPLTPVSLNYPQQAFDAALFPVEENAVIAQLRQFCAQGADEYESRRDFPAVDGTSRL 239 Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFS-WLNELIWREFYRHLMAFYPSVCMG 304 S L+ G LSPRQC +RL E L G S WLNELIWREFYRHLM +YP++C Sbjct: 240 SASLATGGLSPRQCLHRLLAEQPQAL---DGGPGSVWLNELIWREFYRHLMIWYPALCKH 296 Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364 +PFI WT+++ W ++SH QAW++G TG+PI+DAAMRQLN GWMHNRLRMITASFLVKD Sbjct: 297 QPFIRWTKRVAWQENSHDFQAWQKGETGYPIVDAAMRQLNATGWMHNRLRMITASFLVKD 356 Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424 LL+DWR+GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG+RFD G F Sbjct: 357 LLIDWRLGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGERFDRDGEF 416 Query: 425 IRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481 IR WLP L ++P + IH P W +K + L+YP PIV+HK+A TL+ Y AA+K + Sbjct: 417 IRQWLPALRDIPGKAIHEPWRWAEKAGVVLDYPRPIVEHKQARIATLSAYEAARKGA 473 >gi|315299251|gb|EFU58505.1| FAD binding domain of DNA photolyase [Escherichia coli MS 16-3] Length = 472 Score = 530 bits (1364), Expect = e-148, Method: Compositional matrix adjust. Identities = 251/476 (52%), Positives = 335/476 (70%), Gaps = 9/476 (1%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M+ HLVW R DLR DN AL AAC NS A+V+A++IATP QW H +S RQ+ I L Sbjct: 1 MTTHLVWFRQDLRQHDNLALAAACRNSSARVLALYIATPRQWAAHNVSPRQAELINTQLN 60 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 +Q +L++KGI + + +F S+E + C + R+T LFYN QYE+NE RD E+ Sbjct: 61 ALQNALAEKGIPLLFREVDDFAASVETVKQVCAENRITHLFYNYQYEVNERARDVQAERT 120 Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 L++ V+C+ FDDSV+LPPG+++ +MYKV+T F+ A ++ L + + P +R +G Sbjct: 121 LRN-VVCEGFDDSVILPPGAVMTGNHEMYKVFTSFKNAWLKRLREGMPECVAAPKVRSSG 179 Query: 187 PVTPSNIPRF-FDYPFQAIDPM-FPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244 + P+ P +YP Q+ D FP+ E+ A+ LR+FC+ Y +QRD PA++GTS+ Sbjct: 180 SIEPA--PSITLNYPRQSFDTAHFPVEEKAAIAQLRQFCQNGAGEYEQQRDFPAVEGTSR 237 Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFS-WLNELIWREFYRHLMAFYPSVCM 303 LS L+ G LSPRQC +RL E +L + G S WLNELIWREFYRHLM +YPS+C Sbjct: 238 LSASLATGGLSPRQCLHRLLAEQPQVL---EGGPGSVWLNELIWREFYRHLMTYYPSLCK 294 Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363 +PFI WT++++W + L+AW++G TG+PI+DAAMRQLN+ GWMHNRLRMITASFLVK Sbjct: 295 HRPFIAWTDRVQWQSNPAHLKAWQEGKTGYPIVDAAMRQLNSTGWMHNRLRMITASFLVK 354 Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423 DLL+DWR GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG++FD +G Sbjct: 355 DLLIDWREGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGEKFDREGE 414 Query: 424 FIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479 FIR WLPEL +VP + +H P W +K ++L+YP PIVDHK+A TL Y A+K Sbjct: 415 FIRQWLPELRDVPGKAVHEPWKWAEKTGVTLDYPQPIVDHKEARLRTLAAYEEARK 470 >gi|323191055|gb|EFZ76320.1| deoxyribodipyrimidine photo-lyase [Escherichia coli RN587/1] Length = 472 Score = 530 bits (1364), Expect = e-148, Method: Compositional matrix adjust. Identities = 255/476 (53%), Positives = 334/476 (70%), Gaps = 9/476 (1%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M+ HLVW R DLR DN AL AAC S A+V+A++IATP QW H +S RQ+ I A L Sbjct: 1 MTTHLVWFRQDLRQHDNLALAAACRYSSARVLALYIATPRQWAAHNVSPRQAELINAQLN 60 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 +Q +L++KGI +H+ +F S+E + C + RVT LFYN QYE+NE RD +E+ Sbjct: 61 GLQIALAEKGIPLLFHEVDDFAASVEIVKQVCAENRVTHLFYNYQYEVNERARDAQVERT 120 Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 L++ V+C+ FDDSV+LPPG+++ +MYKV+TPF+ A ++ L + + P +R +G Sbjct: 121 LRN-VVCEGFDDSVILPPGAVMTGNHEMYKVFTPFKNAWLKRLREGMPECVAAPKVRSSG 179 Query: 187 PVTPSNIPRF-FDYPFQAIDPM-FPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244 + P+ P +YP Q D FP+ E+ A+ LR+FC+ Y +QRD PA++GTS+ Sbjct: 180 SIDPA--PSITLNYPRQPFDTAHFPVEEKAAIAQLRQFCQNGAGEYEQQRDFPAVEGTSR 237 Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFS-WLNELIWREFYRHLMAFYPSVCM 303 LS L+ G LSPRQC +RL E L GA S WL+ELIWREFYRHLM +YPS+C Sbjct: 238 LSASLATGGLSPRQCLHRLLAEQPQAL---DGGAGSVWLSELIWREFYRHLMTYYPSLCK 294 Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363 PFI WT++++W + LQAW++G TG+PI+DAAMRQLN+ GWMHNRLRMITASFLVK Sbjct: 295 HCPFIAWTDRVQWQSNPAHLQAWQEGKTGYPIVDAAMRQLNSTGWMHNRLRMITASFLVK 354 Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423 DLL+DWR GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG++FD +G Sbjct: 355 DLLIDWREGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGEKFDREGE 414 Query: 424 FIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479 FIR WLPEL +VP + +H P W K ++L+YP PIVDHK+A TL Y A+K Sbjct: 415 FIRQWLPELRDVPGKVVHEPWKWAQKAGMTLDYPQPIVDHKEARLRTLAAYEEARK 470 >gi|331672227|ref|ZP_08373018.1| deoxyribodipyrimidine photolyase [Escherichia coli TA280] gi|331070422|gb|EGI41786.1| deoxyribodipyrimidine photolyase [Escherichia coli TA280] Length = 472 Score = 530 bits (1364), Expect = e-148, Method: Compositional matrix adjust. Identities = 255/476 (53%), Positives = 334/476 (70%), Gaps = 9/476 (1%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M+ HLVW R DLR DN AL AAC S A+V+A++IATP QW H +S RQ+ I A L Sbjct: 1 MTTHLVWFRQDLRQHDNLALAAACRYSSARVLALYIATPRQWAAHNVSPRQAELINAQLN 60 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 +Q +L++KGI +H+ +F S+E + C + RVT LFYN QYE+NE RD +E+ Sbjct: 61 GLQIALAEKGIPLLFHEVDDFAASVEIVKQVCAENRVTHLFYNYQYEVNERARDAQVERT 120 Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 L++ V+C+ FDDSV+LPPG+++ +MYKV+TPF+ A ++ L + + P +R +G Sbjct: 121 LRN-VVCEGFDDSVILPPGAVMTGNHEMYKVFTPFKNAWLKRLREGMPECVAAPKVRSSG 179 Query: 187 PVTPSNIPRF-FDYPFQAIDPM-FPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244 + P+ P +YP Q D FP+ E+ A+ LR+FC+ Y +QRD PA++GTS+ Sbjct: 180 SIDPA--PSITLNYPRQPFDTAHFPVEEKAAIAQLRQFCQNGAGEYEQQRDFPAVEGTSR 237 Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFS-WLNELIWREFYRHLMAFYPSVCM 303 LS L+ G LSPRQC +RL E L GA S WL+ELIWREFYRHLM +YPS+C Sbjct: 238 LSASLATGGLSPRQCLHRLLAEQPQAL---DGGAGSVWLSELIWREFYRHLMTYYPSLCK 294 Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363 PFI WT++++W + LQAW++G TG+PI+DAAMRQLN+ GWMHNRLRMITASFLVK Sbjct: 295 HCPFIAWTDRVQWQSNPAHLQAWQEGKTGYPIVDAAMRQLNSTGWMHNRLRMITASFLVK 354 Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423 DLL+DWR GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG++FD +G Sbjct: 355 DLLIDWREGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGEKFDREGE 414 Query: 424 FIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479 FIR WLPEL +VP + +H P W K ++L+YP PIVDHK+A TL Y A+K Sbjct: 415 FIRQWLPELRDVPGKVVHEPWKWAQKAGVTLDYPQPIVDHKEARLRTLAAYEEARK 470 >gi|311280415|ref|YP_003942646.1| Deoxyribodipyrimidine photo-lyase [Enterobacter cloacae SCF1] gi|308749610|gb|ADO49362.1| Deoxyribodipyrimidine photo-lyase [Enterobacter cloacae SCF1] Length = 471 Score = 529 bits (1363), Expect = e-148, Method: Compositional matrix adjust. Identities = 256/475 (53%), Positives = 336/475 (70%), Gaps = 7/475 (1%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M+ HLVW R DLR+ DN AL AAC +S AKV+A+FIATP QWRQH ++ RQ+ +I A L Sbjct: 1 MTTHLVWFRADLRLHDNLALAAACRDSYAKVLALFIATPGQWRQHRMAPRQAAYIQAQLN 60 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 +Q++L+ KGI + +F S + + C + +V+ L+YN QYE+NE RRD +EK Sbjct: 61 DLQRNLADKGIPLLLREAEDFAASAQVIRQVCNEHKVSSLYYNYQYELNERRRDARVEKA 120 Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 L+ V+C+ FDDSV+L PGS++ QMYKV+TPF+ A ++ L + + P++R G Sbjct: 121 LKD-VLCQGFDDSVMLAPGSVMTGDRQMYKVFTPFKNAYLKRLKEGLPECVRAPSVREEG 179 Query: 187 PVTPSNIPRFFDYPFQAIDP-MFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245 + P +YP DP +FP E++A+ LR+FC+++ Y ++RD PA++GTS+L Sbjct: 180 AIKVCQ-PLKLNYPQTPFDPDLFPADEKSAIARLRQFCQQQAAEYEQKRDFPAMEGTSRL 238 Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFS-WLNELIWREFYRHLMAFYPSVCMG 304 S L++GVLSPRQC RL E L + GA S WLNELIWREFYRHLM F+P +C Sbjct: 239 SCCLTVGVLSPRQCLRRLLAECSGAL---EGGAGSVWLNELIWREFYRHLMTFHPELCRF 295 Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364 KPFI WT+ ++W +D L AW++G TG+PI+DAAMRQLN GWMHNRLRMI ASFLVKD Sbjct: 296 KPFIKWTDNVKWCEDHTRLNAWQRGQTGYPIVDAAMRQLNDTGWMHNRLRMIVASFLVKD 355 Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424 LL+DWR GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG++FD QG F Sbjct: 356 LLIDWREGERYFMSQLVDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGEKFDKQGEF 415 Query: 425 IRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479 IR WLPEL +VP + +H+P W DK +++YP PIVDH +A TL Y AA+K Sbjct: 416 IRRWLPELKDVPDKALHSPWQWADKEGGTIDYPRPIVDHPQARLETLAAYEAARK 470 >gi|323170823|gb|EFZ56473.1| deoxyribodipyrimidine photo-lyase [Escherichia coli LT-68] Length = 472 Score = 529 bits (1363), Expect = e-148, Method: Compositional matrix adjust. Identities = 255/478 (53%), Positives = 336/478 (70%), Gaps = 9/478 (1%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M+ HLVW R DLR+ DN AL AAC NS A+V+A++IATP QW H +S RQ+ I A L Sbjct: 1 MTTHLVWFRQDLRLHDNLALAAACRNSSARVLALYIATPRQWATHNMSPRQAELINAQLN 60 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 +Q +L++KGI + + +F S+E + C + VT LFYN QYE+NE RD +E+ Sbjct: 61 GLQIALAEKGIPLLFREVDDFVASVEIVKQVCAENSVTHLFYNYQYEVNERARDVEVERA 120 Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 L++ V+C+ FDDSV+LPPG+++ +MYKV+TPF+ A ++ L + + P +R +G Sbjct: 121 LRN-VVCEGFDDSVILPPGAVMTGNHEMYKVFTPFKNAWLKRLREGMPECVAAPKVRSSG 179 Query: 187 PVTPSNIPRF-FDYPFQAIDPM-FPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244 + PS P +YP Q+ D FP+ E+ A+ LR+FC+ Y +QRD PA++GTS+ Sbjct: 180 SIEPS--PSITLNYPRQSFDTAHFPVEEKAAIAQLRQFCQNGAGEYEQQRDFPAVEGTSR 237 Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFS-WLNELIWREFYRHLMAFYPSVCM 303 LS L+ G LSPRQC +RL E L GA S WL+ELIWREFYRHLM +YPS+C Sbjct: 238 LSASLATGGLSPRQCLHRLLAEQPQAL---DGGAGSVWLSELIWREFYRHLMTYYPSLCK 294 Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363 PFI WT++++W + LQAW++G TG+PI+DAAMRQLN+ GWMHNRLRMITASFLVK Sbjct: 295 HCPFIAWTDRVQWQSNPAHLQAWQEGKTGYPIVDAAMRQLNSTGWMHNRLRMITASFLVK 354 Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423 DLL+DWR GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG++FD +G Sbjct: 355 DLLIDWREGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGEKFDREGE 414 Query: 424 FIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481 FIR WLPEL +VP + +H P W K + L+YP PIVDHK+A TL Y A+K++ Sbjct: 415 FIRRWLPELRDVPGKAVHEPWKWAQKAGVMLDYPQPIVDHKEARLRTLAAYEEARKEA 472 >gi|301647446|ref|ZP_07247253.1| FAD binding domain of DNA photolyase [Escherichia coli MS 146-1] gi|301074420|gb|EFK89226.1| FAD binding domain of DNA photolyase [Escherichia coli MS 146-1] Length = 472 Score = 529 bits (1363), Expect = e-148, Method: Compositional matrix adjust. Identities = 254/476 (53%), Positives = 336/476 (70%), Gaps = 9/476 (1%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M+ HLVW R DLR+ DN AL AAC NS A+V+A++IATP QW H +S RQ+ I A L Sbjct: 1 MTTHLVWFRQDLRLHDNLALAAACRNSSARVLALYIATPRQWATHNMSPRQAELINAQLN 60 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 +Q +L++KGI + + +F S+E + C + VT LFYN QYE+NE RD +E+ Sbjct: 61 GLQIALAEKGIPLLFREVDDFVASVEIVKQVCAENSVTHLFYNYQYEVNERARDVEVERA 120 Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 L++ V+C+ FDDSV+LPPG+++ +MYKV+TPF+ A ++ L + + P +R +G Sbjct: 121 LRN-VVCEGFDDSVILPPGAVMTGNHEMYKVFTPFKNAWLKRLREGMPECVAAPKVRSSG 179 Query: 187 PVTPSNIPRF-FDYPFQAIDPM-FPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244 + PS P +YP Q+ D FP+ E+ A+ LR+FC+ Y +QRD PA++GTS+ Sbjct: 180 SIEPS--PSITLNYPRQSFDTAHFPVEEKAAIAQLRQFCQNGAGEYEQQRDFPAVEGTSR 237 Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFS-WLNELIWREFYRHLMAFYPSVCM 303 LS L+ G LSPRQC +RL E L GA S WLNELIWREFYRHL+ ++PS+C Sbjct: 238 LSASLATGGLSPRQCLHRLLAEQPQAL---DGGAGSVWLNELIWREFYRHLITYHPSLCK 294 Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363 +PFI WT++++W + LQAW++G TG+PI+DAAMRQLN+ GWMHNRLRMITASFLVK Sbjct: 295 HRPFIAWTDRVQWQSNPAHLQAWQEGKTGYPIVDAAMRQLNSTGWMHNRLRMITASFLVK 354 Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423 DLL+DWR GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG++FD G Sbjct: 355 DLLIDWREGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGEKFDQGGE 414 Query: 424 FIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479 FIR WLPEL +VP + +H P W K ++L+YP PIV+HK+A TL Y AA+K Sbjct: 415 FIRQWLPELRDVPGKVVHEPWKWAQKAGVTLDYPQPIVEHKEARVQTLAAYEAARK 470 >gi|26246677|ref|NP_752717.1| deoxyribodipyrimidine photolyase [Escherichia coli CFT073] gi|227884323|ref|ZP_04002128.1| deoxyribodipyrimidine photolyase [Escherichia coli 83972] gi|300989880|ref|ZP_07179009.1| FAD binding domain of DNA photolyase [Escherichia coli MS 45-1] gi|301046034|ref|ZP_07193214.1| FAD binding domain of DNA photolyase [Escherichia coli MS 185-1] gi|26107076|gb|AAN79260.1|AE016757_164 Deoxyribodipyrimidine photolyase [Escherichia coli CFT073] gi|227838409|gb|EEJ48875.1| deoxyribodipyrimidine photolyase [Escherichia coli 83972] gi|300301951|gb|EFJ58336.1| FAD binding domain of DNA photolyase [Escherichia coli MS 185-1] gi|300407283|gb|EFJ90821.1| FAD binding domain of DNA photolyase [Escherichia coli MS 45-1] gi|307552561|gb|ADN45336.1| deoxyribodipyrimidine photolyase PhrB [Escherichia coli ABU 83972] gi|315292023|gb|EFU51375.1| FAD binding domain of DNA photolyase [Escherichia coli MS 153-1] Length = 472 Score = 529 bits (1363), Expect = e-148, Method: Compositional matrix adjust. Identities = 253/478 (52%), Positives = 336/478 (70%), Gaps = 9/478 (1%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M+ HLVW R DLR DN AL AAC NS A+V+A++IATP QW H +S RQ+ I L Sbjct: 1 MTTHLVWFRQDLRQHDNLALAAACRNSSARVLALYIATPRQWAAHNVSPRQAELINTQLN 60 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 +Q +L++KGI + + +F S+E + C + RVT LFYN QYE+NE RD E+ Sbjct: 61 ALQIALAEKGIPLLFREVDDFAASVEIVKQVCAEYRVTHLFYNYQYEVNERARDVQAERT 120 Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 L++ V+C+ FDDSV+LPPG+++ +MYKV+TPF+ A ++ L + + P +R +G Sbjct: 121 LRN-VVCEGFDDSVILPPGAVMTGNHEMYKVFTPFKNAWLKRLREGMPECVAAPKVRSSG 179 Query: 187 PVTPSNIPRF-FDYPFQAIDPM-FPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244 + P+ P +YP Q+ D FP+ E+ A+ LR+FC Y +QRD PA++GTS+ Sbjct: 180 SIEPA--PSITLNYPRQSFDTAHFPVEEKAAIAQLRQFCLNGAGEYEQQRDFPAVEGTSR 237 Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFS-WLNELIWREFYRHLMAFYPSVCM 303 LS L+ G LSPRQC +RL E +L + G S WLNELIWREFYRHLM +YPS+C Sbjct: 238 LSASLATGGLSPRQCLHRLLAEQPQVL---EGGPGSVWLNELIWREFYRHLMTYYPSLCK 294 Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363 +PFI WT++++W + L+AW++G TG+PI+DAAMRQLN+ GWMHNRLRMITASFLVK Sbjct: 295 HRPFIAWTDRVQWQSNPAHLKAWQEGKTGYPIVDAAMRQLNSTGWMHNRLRMITASFLVK 354 Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423 DLL+DWR GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG++FD +G Sbjct: 355 DLLIDWREGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGEKFDREGE 414 Query: 424 FIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481 FIR WLPEL +VP + +H P W +K ++L+YP PIVDHK+A TL Y A+K + Sbjct: 415 FIRQWLPELRDVPGKAVHEPWKWAEKTGVTLDYPQPIVDHKEARLRTLAAYEEARKGA 472 >gi|197250843|ref|YP_002145681.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|197214546|gb|ACH51943.1| deoxyribodipyrimidine photo-lyase [Salmonella enterica subsp. enterica serovar Agona str. SL483] Length = 473 Score = 529 bits (1363), Expect = e-148, Method: Compositional matrix adjust. Identities = 253/477 (53%), Positives = 337/477 (70%), Gaps = 6/477 (1%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M HLVW R DLR+ DN AL AAC ++ A+V+A++I+TP QW+ H ++ RQ+ FI A L Sbjct: 1 MPTHLVWFRRDLRLQDNLALAAACRDASARVLALYISTPAQWQAHDMAPRQAAFISAQLN 60 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 +Q +L++KGI +H+ ++F+ SI+ + + C Q V+ LFYN QYE NE +RD +EK Sbjct: 61 ALQTALAEKGIPLLFHEVADFNASIKTVKNVCRQHDVSHLFYNYQYEFNERQRDAAVEKT 120 Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 L VIC+ FDDSV+L PG+++ +MYKV+TPF+ A ++ L + +P P IR++G Sbjct: 121 LPS-VICEGFDDSVILAPGAVMTGNHEMYKVFTPFKNAWLKRLKEDIPPCVPAPKIRVSG 179 Query: 187 PVTPSNIPRFFDYPFQAIDP-MFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245 ++ P +YP QA D +FP+ E + LR+FC + Y +RD PA+ GTS+L Sbjct: 180 ALSTPLTPVSLNYPQQAFDAALFPVEENAVIAQLRQFCAQGADGYESRRDFPAVDGTSRL 239 Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFS-WLNELIWREFYRHLMAFYPSVCMG 304 S L+ G LSPRQC +RL E L G S WLNELIWREFYRHLM +YP++C Sbjct: 240 SASLATGGLSPRQCLHRLLAEQPQAL---DGGPGSVWLNELIWREFYRHLMTWYPALCKH 296 Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364 +PFI WT+++ W ++SH QAW++G TG+PI+DAAMRQLN GWMHNRLRMITASFLVKD Sbjct: 297 QPFIRWTKRVAWQENSHYFQAWQKGETGYPIVDAAMRQLNATGWMHNRLRMITASFLVKD 356 Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424 LL+DWR+GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG+RFD G F Sbjct: 357 LLIDWRLGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGERFDRDGEF 416 Query: 425 IRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481 IR WLP L ++P + IH P W +K + L+YP PIV+HK+A TL+ Y AA+K + Sbjct: 417 IRQWLPALRDIPGKAIHEPWRWAEKAGVVLDYPRPIVEHKQARIATLSAYEAARKGA 473 >gi|205351986|ref|YP_002225787.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|205271767|emb|CAR36601.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|326627026|gb|EGE33369.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp. enterica serovar Gallinarum str. 9] Length = 473 Score = 529 bits (1362), Expect = e-148, Method: Compositional matrix adjust. Identities = 253/477 (53%), Positives = 336/477 (70%), Gaps = 6/477 (1%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M HLVW R DLR+ DN AL AAC ++ A+V+A++I+TP QW+ H ++ RQ+ FI A L Sbjct: 1 MPTHLVWFRRDLRLQDNLALAAACRDASARVLALYISTPAQWQAHDMAPRQAAFISAQLN 60 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 +Q +L++KGI +H+ ++F+ SIE + + C Q V+ LFYN QYE NE +RD +EK Sbjct: 61 ALQTALAEKGIPLLFHEVADFNASIETVKNVCRQHDVSHLFYNYQYEFNERQRDAAVEKT 120 Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 L VIC+ FDDSV+L PG+++ +MYKV+TPF+ A ++ L + +P P IR++G Sbjct: 121 LPS-VICEGFDDSVILAPGAVMTGNHEMYKVFTPFKNAWLKRLKEDIPPCVPAPKIRVSG 179 Query: 187 PVTPSNIPRFFDYPFQAIDP-MFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245 ++ P +YP QA D +FP+ E + LR+FC + Y +RD PA+ GTS+L Sbjct: 180 ALSTPLTPVSLNYPQQAFDAALFPVEENAVIAQLRQFCAQGADEYALRRDFPAVDGTSRL 239 Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFS-WLNELIWREFYRHLMAFYPSVCMG 304 S L+ G LSPRQC +RL E L G S WLNELIWREFYRHLM +YP++C Sbjct: 240 SASLATGGLSPRQCLHRLLAEQPQAL---DGGPGSVWLNELIWREFYRHLMTWYPALCKH 296 Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364 +PFI WT+++ W ++ H QAW++G TG+PI+DAAMRQLN GWMHNRLRMITASFLVKD Sbjct: 297 QPFIRWTKRVAWQENPHYFQAWQKGETGYPIVDAAMRQLNATGWMHNRLRMITASFLVKD 356 Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424 LL+DWR+GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG+RFD G F Sbjct: 357 LLIDWRLGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGERFDRDGEF 416 Query: 425 IRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481 IR WLP L ++P + IH P W +K + L+YP PIV+HK+A TL+ Y AA+K + Sbjct: 417 IRQWLPALRDIPGRAIHEPWRWAEKAGVVLDYPRPIVEHKQARISTLSAYEAARKGA 473 >gi|168467738|ref|ZP_02701575.1| deoxyribodipyrimidine photo-lyase [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|195629172|gb|EDX48540.1| deoxyribodipyrimidine photo-lyase [Salmonella enterica subsp. enterica serovar Newport str. SL317] Length = 473 Score = 529 bits (1362), Expect = e-148, Method: Compositional matrix adjust. Identities = 253/477 (53%), Positives = 336/477 (70%), Gaps = 6/477 (1%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M HLVW R DLR+ DN AL AAC ++ A+V+A++I+TP QW+ H ++ RQ+ FI A L Sbjct: 1 MPTHLVWFRRDLRLQDNLALAAACRDASARVLALYISTPAQWQAHDMAPRQAAFISAQLN 60 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 +Q +L++KGI +H+ ++F+ SIE + + C Q V+ LFYN QYE NE +RD +EK Sbjct: 61 ALQAALAEKGIPLLFHEVADFNASIETVKNVCRQHDVSHLFYNYQYEFNERQRDAAVEKT 120 Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 L VIC+ FDDSV+L PG+++ +MYKV+TPF+ A ++ L + +P P IR++G Sbjct: 121 LPS-VICEGFDDSVILAPGAVMTGNHEMYKVFTPFKNAWLKRLKEDIPPCVPAPKIRVSG 179 Query: 187 PVTPSNIPRFFDYPFQAIDP-MFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245 ++ P +YP QA D +FP+ E + LR+FC + Y +RD PA+ GTS+L Sbjct: 180 ALSTPLTPVSLNYPQQAFDAALFPVEENAVIAQLRQFCAQGADEYALRRDFPAVDGTSRL 239 Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFS-WLNELIWREFYRHLMAFYPSVCMG 304 S L+ G LSPRQC +RL E L G S WLNELIWREFYRHLM +YP++C Sbjct: 240 SASLATGGLSPRQCLHRLLAEQPQAL---DGGPGSVWLNELIWREFYRHLMTWYPALCKH 296 Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364 +PFI WT+++ W ++ H QAW++G TG+PI+DAAMRQLN GWMHNRLRMITASFLVKD Sbjct: 297 QPFIRWTKRVAWQENPHYFQAWQKGETGYPIVDAAMRQLNATGWMHNRLRMITASFLVKD 356 Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424 LL+DWR+GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG+RFD G F Sbjct: 357 LLIDWRLGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGERFDRDGEF 416 Query: 425 IRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481 IR WLP L ++P + IH P W +K + L+YP PIV+HK+A TL+ Y AA+K + Sbjct: 417 IRQWLPALRDIPGKAIHEPWRWAEKAGVVLDYPRPIVEHKQARIATLSAYEAARKGA 473 >gi|16764079|ref|NP_459694.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|167992982|ref|ZP_02574077.1| deoxyribodipyrimidine photo-lyase [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|197262487|ref|ZP_03162561.1| deoxyribodipyrimidine photo-lyase [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|207856166|ref|YP_002242817.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|20141633|sp|P25078|PHR_SALTY RecName: Full=Deoxyribodipyrimidine photo-lyase; AltName: Full=DNA photolyase; AltName: Full=Photoreactivating enzyme gi|16419217|gb|AAL19653.1| deoxyribodipyrimidine photolyase (photoreactivation) [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|197240742|gb|EDY23362.1| deoxyribodipyrimidine photo-lyase [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|205328867|gb|EDZ15631.1| deoxyribodipyrimidine photo-lyase [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|206707969|emb|CAR32258.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|261245973|emb|CBG23775.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp. enterica serovar Typhimurium str. D23580] gi|267992447|gb|ACY87332.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S] gi|301157301|emb|CBW16789.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344] gi|312911734|dbj|BAJ35708.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp. enterica serovar Typhimurium str. T000240] gi|320084977|emb|CBY94766.1| deoxyribodipyrimidine photolyase (photoreactivation) [Salmonella enterica subsp. enterica serovar Weltevreden str. 2007-60-3289-1] gi|321226285|gb|EFX51336.1| Deoxyribodipyrimidine photolyase [Salmonella enterica subsp. enterica serovar Typhimurium str. TN061786] gi|323129020|gb|ADX16450.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp. enterica serovar Typhimurium str. 4/74] gi|332987646|gb|AEF06629.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1] Length = 473 Score = 529 bits (1362), Expect = e-148, Method: Compositional matrix adjust. Identities = 253/477 (53%), Positives = 336/477 (70%), Gaps = 6/477 (1%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M HLVW R DLR+ DN AL AAC ++ A+V+A++I+TP QW+ H ++ RQ+ FI A L Sbjct: 1 MPTHLVWFRRDLRLQDNLALAAACRDASARVLALYISTPAQWQAHDMAPRQAAFISAQLN 60 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 +Q +L++KGI +H+ ++F+ SIE + + C Q V+ LFYN QYE NE +RD +EK Sbjct: 61 ALQTALAEKGIPLLFHEVADFNASIETVKNVCRQHDVSHLFYNYQYEFNERQRDAAVEKT 120 Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 L VIC+ FDDSV+L PG+++ +MYKV+TPF+ A ++ L + +P P IR++G Sbjct: 121 LPS-VICEGFDDSVILAPGAVMTGNHEMYKVFTPFKNAWLKRLKEDIPPCVPAPKIRVSG 179 Query: 187 PVTPSNIPRFFDYPFQAIDP-MFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245 ++ P +YP QA D +FP+ E + LR+FC + Y +RD PA+ GTS+L Sbjct: 180 ALSTPLTPVSLNYPQQAFDAALFPVEENAVIAQLRQFCAQGADEYALRRDFPAVDGTSRL 239 Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFS-WLNELIWREFYRHLMAFYPSVCMG 304 S L+ G LSPRQC +RL E L G S WLNELIWREFYRHLM +YP++C Sbjct: 240 SASLATGGLSPRQCLHRLLAEQPQAL---DGGPGSVWLNELIWREFYRHLMTWYPALCKH 296 Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364 +PFI WT+++ W ++ H QAW++G TG+PI+DAAMRQLN GWMHNRLRMITASFLVKD Sbjct: 297 QPFIRWTKRVAWQENPHYFQAWQKGETGYPIVDAAMRQLNATGWMHNRLRMITASFLVKD 356 Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424 LL+DWR+GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG+RFD G F Sbjct: 357 LLIDWRLGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGERFDRDGEF 416 Query: 425 IRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481 IR WLP L ++P + IH P W +K + L+YP PIV+HK+A TL+ Y AA+K + Sbjct: 417 IRQWLPALRDIPGKAIHEPWRWAEKAGVVLDYPRPIVEHKQARIATLSAYEAARKGA 473 >gi|331651706|ref|ZP_08352725.1| deoxyribodipyrimidine photo-lyase (DNA photolyase)(Photoreactivating enzyme) [Escherichia coli M718] gi|331049984|gb|EGI22042.1| deoxyribodipyrimidine photo-lyase (DNA photolyase)(Photoreactivating enzyme) [Escherichia coli M718] Length = 472 Score = 529 bits (1362), Expect = e-148, Method: Compositional matrix adjust. Identities = 254/476 (53%), Positives = 336/476 (70%), Gaps = 9/476 (1%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M+ HLVW R DLR+ DN AL AAC NS A+V+A++IATP QW H +S RQ+ I A L Sbjct: 1 MTTHLVWFRQDLRLHDNLALAAACRNSSARVLALYIATPRQWAAHNMSPRQAELINAQLN 60 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 +Q +L++KGI + + +F S+E + C + VT LFYN QYE+NE RD +E+ Sbjct: 61 GLQIALAEKGIPLLFREVDDFVASVELVKQVCAENSVTHLFYNYQYEVNERARDVDVERA 120 Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 L++ V+C+ FDDSV+LPPG+++ +MYKV+TPF+ A ++ L + + P +R +G Sbjct: 121 LRN-VVCEGFDDSVILPPGAVMTGNHEMYKVFTPFKNAWLKRLREGMPECVAAPKVRSSG 179 Query: 187 PVTPSNIPRF-FDYPFQAIDPM-FPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244 + P+ P +YP Q+ D FP+ E+ A+ LR+FC+ Y +QRD PA++GTS+ Sbjct: 180 SIKPA--PSITLNYPRQSFDTAHFPVEEKAAIAQLRQFCQNGAGEYEQQRDFPAVEGTSR 237 Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFS-WLNELIWREFYRHLMAFYPSVCM 303 LS L+ G LSPRQC +RL E L GA S WL+ELIWREFYRHLM +YPS+C Sbjct: 238 LSASLATGGLSPRQCLHRLLAEQPQAL---DGGAGSVWLSELIWREFYRHLMTYYPSLCK 294 Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363 PFI WT++++W + LQAW++G TG+PI+DAAMRQLN+ GWMHNRLRMITASFLVK Sbjct: 295 HCPFIAWTDRVQWQSNPAHLQAWQEGKTGYPIVDAAMRQLNSTGWMHNRLRMITASFLVK 354 Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423 DLL+DWR GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG++FD +G Sbjct: 355 DLLIDWREGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGEKFDREGE 414 Query: 424 FIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479 FIR WLPEL +VP + +H P W +K + L+YP PIV+HK+A TL Y AA+K Sbjct: 415 FIRQWLPELRDVPGKVVHEPWKWAEKAGVKLDYPQPIVEHKEARVQTLAAYEAARK 470 >gi|194444359|ref|YP_002039947.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194403022|gb|ACF63244.1| deoxyribodipyrimidine photo-lyase [Salmonella enterica subsp. enterica serovar Newport str. SL254] Length = 473 Score = 529 bits (1362), Expect = e-148, Method: Compositional matrix adjust. Identities = 253/477 (53%), Positives = 336/477 (70%), Gaps = 6/477 (1%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M HLVW R DLR+ DN AL AAC ++ A+V+A++I+TP QW+ H ++ RQ+ FI A L Sbjct: 1 MPTHLVWFRRDLRLQDNLALAAACRDASARVLALYISTPAQWQAHDMAPRQAAFISAQLN 60 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 +Q +L++KGI +H+ ++F+ SIE + + C Q V+ LFYN QYE NE +RD +EK Sbjct: 61 ALQTALAEKGIPLLFHEVADFNASIETVKNVCRQHDVSHLFYNYQYEFNERQRDAAVEKT 120 Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 L VIC+ FDDSV+L PG+++ +MYKV+TPF+ A ++ L + +P P IR++G Sbjct: 121 LPS-VICEGFDDSVILAPGAVMTGNHEMYKVFTPFKNAWLKRLKEDIPPCVPAPKIRVSG 179 Query: 187 PVTPSNIPRFFDYPFQAIDP-MFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245 ++ P +YP QA D +FP+ E + LR+FC + Y +RD PA+ GTS+L Sbjct: 180 ALSTPLTPVSLNYPQQAFDAELFPVEENAVIAQLRQFCAQGADEYALRRDFPAVDGTSRL 239 Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFS-WLNELIWREFYRHLMAFYPSVCMG 304 S L+ G LSPRQC +RL E L G S WLNELIWREFYRHLM +YP++C Sbjct: 240 SASLATGGLSPRQCLHRLLAEQPQAL---DGGPGSVWLNELIWREFYRHLMTWYPALCKH 296 Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364 +PFI WT+++ W ++ H QAW++G TG+PI+DAAMRQLN GWMHNRLRMITASFLVKD Sbjct: 297 QPFIRWTKRVAWQENPHYFQAWQKGETGYPIVDAAMRQLNATGWMHNRLRMITASFLVKD 356 Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424 LL+DWR+GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG+RFD G F Sbjct: 357 LLIDWRLGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGERFDRDGEF 416 Query: 425 IRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481 IR WLP L ++P + IH P W +K + L+YP PIV+HK+A TL+ Y AA+K + Sbjct: 417 IRQWLPALRDIPGKAIHEPWRWAEKAGVVLDYPRPIVEHKQARIATLSAYEAARKGA 473 >gi|168240558|ref|ZP_02665490.1| deoxyribodipyrimidine photo-lyase [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|194448497|ref|YP_002044740.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|194406801|gb|ACF67020.1| deoxyribodipyrimidine photo-lyase [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|205339950|gb|EDZ26714.1| deoxyribodipyrimidine photo-lyase [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] Length = 473 Score = 528 bits (1361), Expect = e-148, Method: Compositional matrix adjust. Identities = 253/477 (53%), Positives = 336/477 (70%), Gaps = 6/477 (1%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M HLVW R DLR+ DN AL AAC ++ A+V+A++I+TP QW+ H ++ RQ+ FI A L Sbjct: 1 MPTHLVWFRRDLRLQDNLALAAACRDASARVLALYISTPAQWQAHDMAPRQAAFISAQLN 60 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 +Q +L++KGI +H+ ++F+ SIE + + C Q V+ LFYN QYE NE +RD +EK Sbjct: 61 ALQAALAEKGIPLLFHEVADFNASIETVKNVCRQHDVSHLFYNYQYEFNERQRDAAVEKT 120 Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 L VIC+ FDDSV+L PG+++ +MYKV+TPF+ A ++ L + +P P IR++G Sbjct: 121 LPS-VICEGFDDSVILAPGAVMTGNHEMYKVFTPFKNAWLKRLKEDIPPCVPAPKIRVSG 179 Query: 187 PVTPSNIPRFFDYPFQAIDP-MFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245 ++ P +YP QA D +FP+ E + LR+FC + Y +RD PA+ GTS+L Sbjct: 180 ALSTPLTPVSLNYPQQAFDAALFPVEENAVIAQLRQFCAQGADGYESRRDFPAVDGTSRL 239 Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFS-WLNELIWREFYRHLMAFYPSVCMG 304 S L+ G LSPRQC +RL E L G S WLNELIWREFYRHLM +YP++C Sbjct: 240 SASLATGGLSPRQCLHRLLAEQPQAL---DGGPGSVWLNELIWREFYRHLMTWYPALCKH 296 Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364 +PFI WT+++ W ++ H QAW++G TG+PI+DAAMRQLN GWMHNRLRMITASFLVKD Sbjct: 297 QPFIRWTKRVAWQENPHYFQAWQKGETGYPIVDAAMRQLNATGWMHNRLRMITASFLVKD 356 Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424 LL+DWR+GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG+RFD G F Sbjct: 357 LLIDWRLGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGERFDRDGEF 416 Query: 425 IRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481 IR WLP L ++P + IH P W +K + L+YP PIV+HK+A TL+ Y AA+K + Sbjct: 417 IRQWLPALRDIPGKAIHEPWRWAEKAGVVLDYPRPIVEHKQARIATLSAYEAARKGA 473 >gi|167552876|ref|ZP_02346627.1| deoxyribodipyrimidine photo-lyase [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|205322586|gb|EDZ10425.1| deoxyribodipyrimidine photo-lyase [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] Length = 473 Score = 528 bits (1361), Expect = e-148, Method: Compositional matrix adjust. Identities = 253/477 (53%), Positives = 336/477 (70%), Gaps = 6/477 (1%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M HLVW R DLR+ DN AL AAC ++ A+V+A++I+TP QW+ H ++ RQ+ FI A L Sbjct: 1 MPTHLVWFRRDLRLQDNLALAAACRDASARVLALYISTPAQWQAHDMAPRQAAFISAQLN 60 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 +Q +L++KGI +H+ ++F+ SIE + + C Q V+ LFYN QYE NE +RD +EK Sbjct: 61 ALQTALAEKGIPLLFHEVADFNASIETVKNVCRQHDVSHLFYNYQYEFNERQRDAAVEKT 120 Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 L VIC+ FDDSV+L PG+++ +MYKV+TPF+ A ++ L + +P P IR++G Sbjct: 121 LPS-VICEGFDDSVILAPGAVMTGNHEMYKVFTPFKNAWLKRLKEDIPPCVPAPKIRVSG 179 Query: 187 PVTPSNIPRFFDYPFQAIDP-MFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245 ++ P +YP QA D +FP+ E + LR+FC + Y +RD PA+ GTS+L Sbjct: 180 ALSTPLTPVSLNYPQQAFDAALFPVEENAVIAQLRQFCAQGADGYESRRDFPAVDGTSRL 239 Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFS-WLNELIWREFYRHLMAFYPSVCMG 304 S L+ G LSPRQC +RL E L G S WLNELIWREFYRHLM +YP++C Sbjct: 240 SASLATGGLSPRQCLHRLLAEQPQAL---DGGPGSVWLNELIWREFYRHLMTWYPALCKH 296 Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364 +PFI WT+++ W ++ H QAW++G TG+PI+DAAMRQLN GWMHNRLRMITASFLVKD Sbjct: 297 QPFIRWTKRVAWQENPHYFQAWQKGETGYPIVDAAMRQLNATGWMHNRLRMITASFLVKD 356 Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424 LL+DWR+GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG+RFD G F Sbjct: 357 LLIDWRLGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGERFDRDGEF 416 Query: 425 IRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481 IR WLP L ++P + IH P W +K + L+YP PIV+HK+A TL+ Y AA+K + Sbjct: 417 IRQWLPALRDIPGKAIHEPWRWAEKAGVVLDYPRPIVEHKQARIATLSAYEAARKGA 473 >gi|293413984|ref|ZP_06656633.1| deoxyribodipyrimidine photo-lyase [Escherichia coli B185] gi|291434042|gb|EFF07015.1| deoxyribodipyrimidine photo-lyase [Escherichia coli B185] Length = 472 Score = 528 bits (1361), Expect = e-148, Method: Compositional matrix adjust. Identities = 253/476 (53%), Positives = 337/476 (70%), Gaps = 9/476 (1%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M+ HLVW R DLR+ DN AL AAC NS A+V+A++IATP QW H +S RQ+ I A L Sbjct: 1 MTTHLVWFRQDLRLHDNLALAAACRNSSARVLALYIATPRQWAAHNMSPRQAELINAQLN 60 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 +Q +L++KGI + + +F S+E + C + VT LFYN QYE+NE RD +E+ Sbjct: 61 GLQIALAEKGIPLLFREVDDFVASVELVKQVCAENSVTHLFYNYQYEVNERARDVDVERA 120 Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 L++ V+C+ FDDSV+LPPG+++ +MYKV+TPF+ A ++ L + + P +R +G Sbjct: 121 LRN-VVCEGFDDSVILPPGAVMTGNHEMYKVFTPFKNAWLKRLREGMPECVAAPKVRSSG 179 Query: 187 PVTPSNIPRF-FDYPFQAIDPM-FPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244 + P+ P +YP Q+ D FP+ E+ A+ LR+FC+ Y +QRD PA++GTS+ Sbjct: 180 SIKPA--PSITLNYPRQSFDTAHFPVEEKAAIAQLRQFCQNGAGEYEQQRDFPAVEGTSR 237 Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFS-WLNELIWREFYRHLMAFYPSVCM 303 LS L+ G LSPRQC +RL E L GA S WLNELIWREFYRHL+ ++PS+C Sbjct: 238 LSASLATGGLSPRQCLHRLLAEQPQAL---DGGAGSVWLNELIWREFYRHLITYHPSLCK 294 Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363 +PFI WT++++W + LQAW++G TG+PI+DAAMRQLN+ GWMHNRLRMITASFLVK Sbjct: 295 HRPFIAWTDRVQWQSNPAHLQAWQEGKTGYPIVDAAMRQLNSSGWMHNRLRMITASFLVK 354 Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423 DLL++WR GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG++FD +G Sbjct: 355 DLLINWREGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGEKFDREGE 414 Query: 424 FIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479 FIR WLPEL NVP + +H P W +K + L+YP PIV+HK+A TL Y AA+K Sbjct: 415 FIRQWLPELRNVPGKSVHEPWKWAEKAGVKLDYPQPIVEHKEARVQTLAAYEAARK 470 >gi|323971992|gb|EGB67212.1| DNA photolyase [Escherichia coli TA007] Length = 472 Score = 528 bits (1360), Expect = e-148, Method: Compositional matrix adjust. Identities = 254/476 (53%), Positives = 336/476 (70%), Gaps = 9/476 (1%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M+ HLVW R DLR+ DN AL AAC NS A+V+A++IATP QW H +S RQ+ I A L Sbjct: 1 MTTHLVWFRQDLRLHDNLALAAACRNSSARVLALYIATPRQWATHNMSPRQAELINAQLN 60 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 +Q +L++KGI + + +F S+E + C + VT LFYN QYE+NE RD +E+ Sbjct: 61 GLQIALAEKGIPLLFREVDDFVASVEIVKQVCAENSVTHLFYNYQYEVNERARDVEVERA 120 Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 L++ V+C+ FDDSV+LPPG+++ +MYKV+TPF+ A ++ L + + P +R +G Sbjct: 121 LRN-VVCEGFDDSVILPPGAVMTGNHEMYKVFTPFKNAWLKRLREGMPECVAAPKVRSSG 179 Query: 187 PVTPSNIPRF-FDYPFQAIDPM-FPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244 + PS P +YP Q+ D FP+ E+ A+ LR+FC+ Y +QRD PA++GTS+ Sbjct: 180 SIEPS--PSITLNYPRQSFDTAHFPVEEKAAIAQLRQFCQNGAGEYEQQRDFPAVEGTSR 237 Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFS-WLNELIWREFYRHLMAFYPSVCM 303 LS L+ G LSPRQC +RL E L GA S WLNELIWREFYRHL+ ++PS+C Sbjct: 238 LSASLATGGLSPRQCLHRLLAEQPQAL---DGGAGSVWLNELIWREFYRHLITYHPSLCK 294 Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363 +PFI WT++++W + LQAW++G TG+PI+DAAMRQLN+ GWMHNRLRMITASFLVK Sbjct: 295 HRPFIAWTDRVQWQSNPAHLQAWQEGKTGYPIVDAAMRQLNSTGWMHNRLRMITASFLVK 354 Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423 DLL DWR GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG++FD +G Sbjct: 355 DLLNDWREGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGEKFDHEGE 414 Query: 424 FIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479 FIR WLPEL +VP + +H P W K ++L+YP PIV+HK+A TL Y AA+K Sbjct: 415 FIRQWLPELRDVPGKVVHEPWKWAQKAGVTLDYPQPIVEHKEARVQTLAAYEAARK 470 >gi|320175355|gb|EFW50459.1| Deoxyribodipyrimidine photolyase [Shigella dysenteriae CDC 74-1112] Length = 472 Score = 528 bits (1359), Expect = e-148, Method: Compositional matrix adjust. Identities = 255/478 (53%), Positives = 335/478 (70%), Gaps = 9/478 (1%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M+ HLVW R DLR+ DN AL AAC NS A+V+A++IATP QW H +S RQ+ I A L Sbjct: 1 MTTHLVWFRQDLRLHDNLALAAACRNSSARVLALYIATPRQWATHNMSPRQAELINAQLN 60 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 +Q +L++KGI + + +F S+E + C + VT LFYN QYE+NE RD +E+ Sbjct: 61 GLQIALAEKGIPLLFREVDDFVASVEIVKQVCAENSVTHLFYNYQYEVNERARDVEVERA 120 Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 L++ V+C+ FDDSV+LPPG+++ +MYKV+TPF+ A ++ L + + P +R +G Sbjct: 121 LRN-VVCEGFDDSVILPPGAVMTGNHEMYKVFTPFKNAWLKRLREGMPECVAAPKVRSSG 179 Query: 187 PVTPSNIPRF-FDYPFQAIDPM-FPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244 + PS P +YP Q+ D FP+ E+ A+ LR+FC+ Y +QRD PA++GTS+ Sbjct: 180 SIEPS--PSITLNYPRQSFDTAHFPVEEKAAIAQLRQFCQNGAGEYEQQRDFPAVEGTSR 237 Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFS-WLNELIWREFYRHLMAFYPSVCM 303 LS L+ G LSPRQC +RL E L GA S WL+ELIWREFYRHLM +YPS+C Sbjct: 238 LSASLATGGLSPRQCLHRLLAEQPQAL---DGGAGSVWLSELIWREFYRHLMTYYPSLCK 294 Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363 PFI WT++++W + LQAW++G TG+PI+DAAMRQLN+ GWMHNRLRMITASFLVK Sbjct: 295 HCPFIAWTDRVQWQSNPAHLQAWQEGKTGYPIVDAAMRQLNSTGWMHNRLRMITASFLVK 354 Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423 DLL+DWR GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG++FD +G Sbjct: 355 DLLIDWREGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGEKFDREGE 414 Query: 424 FIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481 FIR WLPEL +VP + +H P W K + L+YP PIVDHK+A TL Y A+K + Sbjct: 415 FIRRWLPELRDVPGKAVHEPWKWAQKAGVMLDYPQPIVDHKEARLRTLAAYEEARKGA 472 >gi|215485731|ref|YP_002328162.1| deoxyribodipyrimidine photolyase [Escherichia coli O127:H6 str. E2348/69] gi|312965140|ref|ZP_07779377.1| deoxyribodipyrimidine photo-lyase [Escherichia coli 2362-75] gi|215263803|emb|CAS08139.1| deoxyribodipyrimidine photolyase, FAD-binding [Escherichia coli O127:H6 str. E2348/69] gi|312290231|gb|EFR18114.1| deoxyribodipyrimidine photo-lyase [Escherichia coli 2362-75] Length = 472 Score = 528 bits (1359), Expect = e-148, Method: Compositional matrix adjust. Identities = 253/478 (52%), Positives = 334/478 (69%), Gaps = 9/478 (1%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M+ HLVW R DLR DN AL AAC NS A+V+A++IATP QW H +S RQ+ I L Sbjct: 1 MTTHLVWFRQDLRQHDNLALAAACRNSSARVLALYIATPRQWAVHNVSPRQAELINTQLN 60 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 +Q +L++KGI + + +F S+E + C + RVT LFYN QYE+NE RD E+ Sbjct: 61 ALQNALAEKGIPLLFREVDDFAASVEIVKQVCAENRVTHLFYNYQYEVNERARDVQAERA 120 Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 L++ V+C+ FDD V+LPPG+++ +MYKV+TPF+ A ++ L + + P +R +G Sbjct: 121 LRN-VVCEGFDDGVILPPGAVMTGNHEMYKVFTPFKNAWLKRLREGMPECVAAPKVRSSG 179 Query: 187 PVTPSNIPRF-FDYPFQAIDPM-FPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244 + P+ P +YP Q D FP+ E+ A+ LR+FC+ Y +QRD PA++GTS+ Sbjct: 180 SIDPA--PSITLNYPRQPFDTAHFPVEEKAAIAQLRQFCQNGAGEYEQQRDFPAVEGTSR 237 Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFS-WLNELIWREFYRHLMAFYPSVCM 303 LS L+ G LSPRQC +RL E L GA S WLNELIWREFYRHL+ +YPS+C Sbjct: 238 LSASLATGGLSPRQCLHRLLAEQPQAL---DGGAGSIWLNELIWREFYRHLITYYPSLCK 294 Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363 +PFI WT++++W +S L+AW++G TG+PI+DAAMRQLN+ GWMHNRLRMITASFLVK Sbjct: 295 HRPFIVWTDRVQWQSNSAHLKAWQEGKTGYPIVDAAMRQLNSTGWMHNRLRMITASFLVK 354 Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423 DLL+DWR GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG++FD +G Sbjct: 355 DLLIDWREGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGEKFDREGE 414 Query: 424 FIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481 FIR WLPEL +VP + +H P W K ++L+YP PIVDHK+A TL Y A+K + Sbjct: 415 FIRQWLPELRDVPGKVVHEPWKWAQKAGVTLDYPQPIVDHKEARLRTLAAYEEARKGA 472 >gi|301020834|ref|ZP_07184898.1| FAD binding domain of DNA photolyase [Escherichia coli MS 69-1] gi|300398480|gb|EFJ82018.1| FAD binding domain of DNA photolyase [Escherichia coli MS 69-1] Length = 472 Score = 528 bits (1359), Expect = e-147, Method: Compositional matrix adjust. Identities = 254/476 (53%), Positives = 334/476 (70%), Gaps = 9/476 (1%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M+ HLVW R DLR DN AL AAC S A+V+A++IATP QW H +S RQ+ I A L Sbjct: 1 MTTHLVWFRQDLRQHDNLALAAACRYSSARVLALYIATPRQWAAHNVSPRQAELINAQLN 60 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 ++Q +L++KGI +H+ +F S+E + C + RVT LFYN QYE+NE RD +E+ Sbjct: 61 RLQIALAEKGIPLLFHEVDDFAASVEIVKQVCAENRVTHLFYNYQYEVNERARDAQVERT 120 Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 L++ V+C+ FDDSV+LPPG+++ +MYKV+TPF+ A ++ L + + P +R +G Sbjct: 121 LRN-VVCEGFDDSVILPPGAVMTGNHEMYKVFTPFKNAWLKRLREGMPECVAAPKVRSSG 179 Query: 187 PVTPSNIPRF-FDYPFQAIDPM-FPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244 + P+ P +YP Q D FP+ E+ A+ LR+FC+ Y +QRD PA++GTS+ Sbjct: 180 SIDPA--PSITLNYPRQPFDTAHFPVEEKAAIAQLRQFCQNGAGEYEQQRDFPAVEGTSR 237 Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFS-WLNELIWREFYRHLMAFYPSVCM 303 LS L+ G LSPRQC +RL E L GA S WL+ELIWREFYRHLM +YPS+C Sbjct: 238 LSASLATGGLSPRQCLHRLLAEQPQAL---DGGAGSVWLSELIWREFYRHLMTYYPSLCK 294 Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363 PFI WT++++W + LQ W++G TG+PI+DAAMRQLN+ GWMHNRLRMITASFLVK Sbjct: 295 HCPFIAWTDRVQWQSNPAHLQVWQEGKTGYPIVDAAMRQLNSTGWMHNRLRMITASFLVK 354 Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423 DLL+DWR GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG++FD +G Sbjct: 355 DLLIDWREGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGEKFDREGE 414 Query: 424 FIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479 FIR WLPEL +VP + +H P W K ++L+YP PIVDHK+A TL Y A+K Sbjct: 415 FIRQWLPELRDVPGKVVHEPWKWAQKAGVTLDYPQPIVDHKEARLRTLAAYEEARK 470 >gi|1827916|pdb|1DNP|A Chain A, Structure Of Deoxyribodipyrimidine Photolyase gi|1827917|pdb|1DNP|B Chain B, Structure Of Deoxyribodipyrimidine Photolyase Length = 471 Score = 528 bits (1359), Expect = e-147, Method: Compositional matrix adjust. Identities = 253/475 (53%), Positives = 336/475 (70%), Gaps = 9/475 (1%) Query: 8 SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67 + HLVW R DLR+ DN AL AAC NS A+V+A++IATP QW H +S RQ+ I A L Sbjct: 1 TTHLVWFRQDLRLHDNLALAAACRNSSARVLALYIATPRQWATHNMSPRQAELINAQLNG 60 Query: 68 VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127 +Q +L++KGI + + +F S+E + C + VT LFYN QYE+NE RD +E+ L Sbjct: 61 LQIALAEKGIPLLFREVDDFVASVEIVKQVCAENSVTHLFYNYQYEVNERARDVEVERAL 120 Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187 ++ V+C+ FDDSV+LPPG+++ +MYKV+TPF+ A ++ L + + P +R +G Sbjct: 121 RN-VVCEGFDDSVILPPGAVMTGNHEMYKVFTPFKNAWLKRLREGMPECVAAPKVRSSGS 179 Query: 188 VTPSNIPRF-FDYPFQAIDPM-FPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245 + PS P +YP Q+ D FP+ E+ A+ LR+FC+ Y +QRD PA++GTS+L Sbjct: 180 IEPS--PSITLNYPRQSFDTAHFPVEEKAAIAQLRQFCQNGAGEYEQQRDFPAVEGTSRL 237 Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFS-WLNELIWREFYRHLMAFYPSVCMG 304 S L+ G LSPRQC +RL E L GA S WLNELIWREFYRHL+ ++PS+C Sbjct: 238 SASLATGGLSPRQCLHRLLAEQPQAL---DGGAGSVWLNELIWREFYRHLITYHPSLCKH 294 Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364 +PFI WT++++W + LQAW++G TG+PI+DAAMRQLN+ GWMHNRLRMITASFLVKD Sbjct: 295 RPFIAWTDRVQWQSNPAHLQAWQEGKTGYPIVDAAMRQLNSTGWMHNRLRMITASFLVKD 354 Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424 LL+DWR GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG++FD +G F Sbjct: 355 LLIDWREGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGEKFDHEGEF 414 Query: 425 IRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479 IR WLPEL +VP + +H P W K ++L+YP PIV+HK+A TL Y AA+K Sbjct: 415 IRQWLPELRDVPGKVVHEPWKWAQKAGVTLDYPQPIVEHKEARVQTLAAYEAARK 469 >gi|187734160|ref|YP_001879362.1| deoxyribodipyrimidine photolyase [Shigella boydii CDC 3083-94] gi|187431152|gb|ACD10426.1| deoxyribodipyrimidine photolyase [Shigella boydii CDC 3083-94] Length = 472 Score = 528 bits (1359), Expect = e-147, Method: Compositional matrix adjust. Identities = 255/478 (53%), Positives = 335/478 (70%), Gaps = 9/478 (1%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M+ HLVW R DLR+ DN AL AAC NS A+V+A++IATP QW H +S RQ+ I A L Sbjct: 1 MTTHLVWFRQDLRLHDNLALAAACRNSSARVLALYIATPRQWATHNMSPRQAELINAQLN 60 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 +Q +L++KGI + + +F S+E + C + VT LFYN QYE+NE RD +E+ Sbjct: 61 GLQIALAEKGIPLLFREVDDFIASVEIVKQVCAENSVTHLFYNYQYEVNERARDVEVERA 120 Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 L++ V+C+ FDDSV+LPPG+++ +MYKV+TPF+ A ++ L + + P +R +G Sbjct: 121 LRN-VVCEGFDDSVILPPGAVMTGNHEMYKVFTPFKNAWLKRLREGMPECVAAPKVRSSG 179 Query: 187 PVTPSNIPRF-FDYPFQAIDPM-FPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244 + PS P +YP Q+ D FP+ E+ A+ LR+FC+ Y +QRD PA++GTS+ Sbjct: 180 SIEPS--PSITLNYPRQSFDTAHFPVEEKAAIAQLRQFCQNGAGEYEQQRDFPAVEGTSR 237 Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFS-WLNELIWREFYRHLMAFYPSVCM 303 LS L+ G LSPRQC +RL E L GA S WL+ELIWREFYRHLM +YPS+C Sbjct: 238 LSASLATGGLSPRQCLHRLLAEQPQAL---DGGAGSVWLSELIWREFYRHLMTYYPSLCK 294 Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363 PFI WT++++W + LQAW++G TG+PI+DAAMRQLN+ GWMHNRLRMITASFLVK Sbjct: 295 HCPFIAWTDRVQWQSNPAHLQAWQEGKTGYPIVDAAMRQLNSTGWMHNRLRMITASFLVK 354 Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423 DLL+DWR GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG++FD +G Sbjct: 355 DLLIDWREGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGEKFDREGE 414 Query: 424 FIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481 FIR WLPEL +VP + +H P W K + L+YP PIVDHK+A TL Y A+K + Sbjct: 415 FIRRWLPELRDVPGKAVHEPWKWAQKAGVMLDYPQPIVDHKEARLRTLAAYEEARKGA 472 >gi|82543137|ref|YP_407084.1| deoxyribodipyrimidine photolyase [Shigella boydii Sb227] gi|81244548|gb|ABB65256.1| deoxyribodipyrimidine photolyase [Shigella boydii Sb227] gi|320183678|gb|EFW58518.1| Deoxyribodipyrimidine photolyase [Shigella flexneri CDC 796-83] gi|332097668|gb|EGJ02643.1| deoxyribodipyrimidine photo-lyase [Shigella boydii 3594-74] Length = 472 Score = 527 bits (1358), Expect = e-147, Method: Compositional matrix adjust. Identities = 255/476 (53%), Positives = 334/476 (70%), Gaps = 9/476 (1%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M+ HLVW R DLR+ DN AL AAC NS A+V+A++IATP QW H +S RQ+ I A L Sbjct: 1 MTTHLVWFRQDLRLHDNLALAAACSNSSARVLALYIATPRQWATHNMSPRQAELINAQLN 60 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 +Q +L++KGI + + +F S+E + C + VT LFYN QYE+NE RD +E+ Sbjct: 61 GLQIALAEKGIPLLFREVDDFVASVEIVKQVCAENSVTHLFYNYQYEVNERARDVEVERA 120 Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 L++ V+C+ FDDSV+LPPG+++ +MYKV+TPF+ A ++ L + + P +R +G Sbjct: 121 LRN-VVCEGFDDSVILPPGAVMTGNHEMYKVFTPFKNAWLKRLREGMPECVAAPKVRSSG 179 Query: 187 PVTPSNIPRF-FDYPFQAIDPM-FPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244 + PS P +YP Q+ D FP+ E+ A+ LR+FC+ Y +QRD PA++GTS+ Sbjct: 180 SIEPS--PSITLNYPRQSFDTAHFPVEEKAAIAQLRQFCQNGAGEYEQQRDFPAVEGTSR 237 Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFS-WLNELIWREFYRHLMAFYPSVCM 303 LS L+ G LSPRQC +RL E L GA S WL+ELIWREFYRHLM +YPS+C Sbjct: 238 LSASLATGGLSPRQCLHRLLAEQPQAL---DGGAGSVWLSELIWREFYRHLMTYYPSLCK 294 Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363 PFI WT++++W + LQAW++G TG+PI+DAAMRQLN+ GWMHNRLRMITASFLVK Sbjct: 295 HCPFIAWTDRVQWQSNPAHLQAWQEGKTGYPIVDAAMRQLNSTGWMHNRLRMITASFLVK 354 Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423 DLL+DWR GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG++FD +G Sbjct: 355 DLLIDWREGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGEKFDREGE 414 Query: 424 FIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479 FIR WLPEL +VP + +H P W K + L+YP PIVDHK+A TL Y A+K Sbjct: 415 FIRRWLPELRDVPGKAVHEPWKWAQKAGVMLDYPQPIVDHKEARLRTLAAYEEARK 470 >gi|200390561|ref|ZP_03217172.1| deoxyribodipyrimidine photo-lyase [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|199603006|gb|EDZ01552.1| deoxyribodipyrimidine photo-lyase [Salmonella enterica subsp. enterica serovar Virchow str. SL491] Length = 473 Score = 527 bits (1358), Expect = e-147, Method: Compositional matrix adjust. Identities = 253/477 (53%), Positives = 335/477 (70%), Gaps = 6/477 (1%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M HLVW R DLR+ DN AL AAC ++ A+V A++I+TP QW+ H ++ RQ+ FI A L Sbjct: 1 MPTHLVWFRRDLRLQDNLALAAACRDASARVRALYISTPAQWQAHDMAPRQAAFISAQLN 60 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 +Q +L++KGI +H+ ++F+ SIE + + C Q V+ LFYN QYE NE +RD +EK Sbjct: 61 ALQTALAEKGIPLLFHEVADFNASIETVKNVCRQHDVSHLFYNYQYEFNERQRDAAVEKT 120 Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 L VIC+ FDDSV+L PG+++ +MYKV+TPF+ A ++ L + +P P IR++G Sbjct: 121 LPS-VICEGFDDSVILAPGAVMTGNHEMYKVFTPFKNAWLKRLKEDIPPCVPAPKIRVSG 179 Query: 187 PVTPSNIPRFFDYPFQAIDP-MFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245 ++ P +YP QA D +FP+ E + LR+FC + Y +RD PA+ GTS+L Sbjct: 180 ALSTPLTPVSLNYPQQAFDAALFPVEENAVIAQLRQFCAQGADGYESRRDFPAVDGTSRL 239 Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFS-WLNELIWREFYRHLMAFYPSVCMG 304 S L+ G LSPRQC +RL E L G S WLNELIWREFYRHLM +YP++C Sbjct: 240 SASLATGGLSPRQCLHRLLAEQPQAL---DGGPGSVWLNELIWREFYRHLMTWYPALCKH 296 Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364 +PFI WT+++ W ++ H QAW++G TG+PI+DAAMRQLN GWMHNRLRMITASFLVKD Sbjct: 297 QPFIRWTKRVAWQENPHYFQAWQKGETGYPIVDAAMRQLNATGWMHNRLRMITASFLVKD 356 Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424 LL+DWR+GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG+RFD G F Sbjct: 357 LLIDWRLGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGERFDRDGEF 416 Query: 425 IRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481 IR WLP L ++P + IH P W +K + L+YP PIV+HK+A TL+ Y AA+K + Sbjct: 417 IRQWLPALRDIPGKAIHEPWRWAEKAGVVLDYPRPIVEHKQARIATLSAYEAARKGA 473 >gi|209917958|ref|YP_002292042.1| deoxyribodipyrimidine photolyase [Escherichia coli SE11] gi|293432976|ref|ZP_06661404.1| deoxyribodipyrimidine photo-lyase [Escherichia coli B088] gi|300823005|ref|ZP_07103140.1| FAD binding domain of DNA photolyase [Escherichia coli MS 119-7] gi|331667072|ref|ZP_08367937.1| deoxyribodipyrimidine photo-lyase (DNA photolyase)(Photoreactivating enzyme) [Escherichia coli TA271] gi|331676388|ref|ZP_08377085.1| deoxyribodipyrimidine photo-lyase (DNA photolyase)(Photoreactivating enzyme) [Escherichia coli H591] gi|209911217|dbj|BAG76291.1| deoxyribodipyrimidine photolyase [Escherichia coli SE11] gi|291323795|gb|EFE63217.1| deoxyribodipyrimidine photo-lyase [Escherichia coli B088] gi|300524546|gb|EFK45615.1| FAD binding domain of DNA photolyase [Escherichia coli MS 119-7] gi|324020349|gb|EGB89568.1| FAD binding domain of DNA photolyase [Escherichia coli MS 117-3] gi|331065428|gb|EGI37321.1| deoxyribodipyrimidine photo-lyase (DNA photolyase)(Photoreactivating enzyme) [Escherichia coli TA271] gi|331075881|gb|EGI47178.1| deoxyribodipyrimidine photo-lyase (DNA photolyase)(Photoreactivating enzyme) [Escherichia coli H591] Length = 472 Score = 527 bits (1358), Expect = e-147, Method: Compositional matrix adjust. Identities = 254/478 (53%), Positives = 335/478 (70%), Gaps = 9/478 (1%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M+ HLVW R DLR+ DN AL AAC NS A+V+A++IATP QW H +S RQ+ I A L Sbjct: 1 MTTHLVWFRQDLRLHDNLALAAACRNSSARVLALYIATPRQWETHNMSPRQAELINAQLN 60 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 +Q +L++KGI + + +F S+E + C + VT LFYN QYE+NE RD +E+ Sbjct: 61 GLQIALAEKGIPLLFREVDDFVASVEIVKQVCAENSVTHLFYNYQYEVNERARDVEVERA 120 Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 L++ V+C+ FDDSV+LPPG+++ +MYKV+TPF+ A ++ L + + P +R +G Sbjct: 121 LRN-VVCEGFDDSVILPPGAVMTGNHEMYKVFTPFKNAWLKRLREGMPECVAAPKVRSSG 179 Query: 187 PVTPSNIPRF-FDYPFQAIDPM-FPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244 + PS P +YP Q+ D FP+ E+ A+ LR+FC+ Y +QRD PA++GTS+ Sbjct: 180 SIEPS--PSITLNYPRQSFDTAHFPVEEKAAIAQLRQFCQNGAGDYEQQRDFPAVEGTSR 237 Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFS-WLNELIWREFYRHLMAFYPSVCM 303 LS L+ G LSPRQC +RL E L GA S WL+ELIWREFYRHLM +YPS+C Sbjct: 238 LSASLATGGLSPRQCLHRLLAEQPQAL---DGGAGSVWLSELIWREFYRHLMTYYPSLCK 294 Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363 +PFI WT++++W + LQAW++G TG+PI+DAAMRQLN+ GWMHNRLRMITASFLVK Sbjct: 295 HRPFIAWTDRVQWQSNPAHLQAWQKGKTGYPIVDAAMRQLNSTGWMHNRLRMITASFLVK 354 Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423 DLL+DWR GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNP QG++FD +G Sbjct: 355 DLLIDWREGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPITQGEKFDREGE 414 Query: 424 FIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481 FIR WLPEL +VP + +H P W K + L+YP PIVDHK+A TL Y A+K + Sbjct: 415 FIRRWLPELRDVPGKAVHEPWKWAQKAGVKLDYPQPIVDHKEARLRTLAAYEEARKGA 472 >gi|284920486|emb|CBG33548.1| deoxyribodipyrimidine photolyase [Escherichia coli 042] Length = 472 Score = 527 bits (1358), Expect = e-147, Method: Compositional matrix adjust. Identities = 252/478 (52%), Positives = 337/478 (70%), Gaps = 9/478 (1%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M+ HLVW R DLR+ DN AL AAC NS A+V+A++IATP QW H +S RQ+ I A L Sbjct: 1 MTTHLVWFRQDLRLHDNLALAAACRNSSARVLALYIATPRQWATHNMSPRQAKLINAQLN 60 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 ++ +L++KGI + + +F S+E + C + VT LFYN QYE+NE RD +E+ Sbjct: 61 GLRIALAEKGIPLLFREVDDFAASVEIIKQVCAENSVTHLFYNYQYEVNERARDVQVERT 120 Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 L++ V+C+ FDDSV+LPPG+++ +MYKV+TPF+ A ++ L + + P +R +G Sbjct: 121 LRN-VLCEGFDDSVILPPGAVMTGNHEMYKVFTPFKNAWLKRLREGMPECVAAPKVRSSG 179 Query: 187 PVTPSNIPRF-FDYPFQAIDPM-FPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244 + P+ P +YP Q+ D FP+ E+ A+ LR+FC+ Y +QRD PA++GTS+ Sbjct: 180 SIEPA--PSITLNYPRQSFDTAHFPVEEKAAIAQLRQFCQNGAGEYEQQRDFPAVEGTSR 237 Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFS-WLNELIWREFYRHLMAFYPSVCM 303 LS L+ G LSPRQC +RL E L GA S WLNELIWREFYRHLM +YPS+C Sbjct: 238 LSASLATGGLSPRQCLHRLLAEQPQAL---DGGAGSVWLNELIWREFYRHLMTYYPSLCK 294 Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363 +PFI WT++++W ++ +AW++G TG+PI+DAAMRQLN+ GWMHNRLRMITASFLVK Sbjct: 295 HRPFIVWTDRVQWQRNPAHFKAWQEGKTGYPIVDAAMRQLNSTGWMHNRLRMITASFLVK 354 Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423 DLL+DWR GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG++FD +G Sbjct: 355 DLLIDWREGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGEKFDREGE 414 Query: 424 FIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481 FIR WLPEL +VP + +H P W K ++L+YP PIVDHK+A TL Y A+K + Sbjct: 415 FIRRWLPELRDVPGKAVHEPWKWAQKAGVTLDYPQPIVDHKEARLRTLAAYEEARKGA 472 >gi|218699057|ref|YP_002406686.1| deoxyribodipyrimidine photolyase [Escherichia coli IAI39] gi|218369043|emb|CAR16797.1| deoxyribodipyrimidine photolyase, FAD-binding [Escherichia coli IAI39] Length = 472 Score = 527 bits (1358), Expect = e-147, Method: Compositional matrix adjust. Identities = 253/478 (52%), Positives = 334/478 (69%), Gaps = 9/478 (1%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M+ HLVW R DLR DN AL AAC NS +V+A++IATP QW H +S RQ+ FI A L Sbjct: 1 MTTHLVWFRQDLRQHDNLALAAACRNSSVRVLALYIATPRQWAAHNMSPRQAEFINAQLN 60 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 +Q +L++KGI +H+ +F S+E + C + RVT LFYN QYE+NE RD E+ Sbjct: 61 GLQIALAEKGIPLLFHEVDDFAASVEIVKQVCAENRVTHLFYNYQYEVNERARDVQAERA 120 Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 L++ V+C+ FDD V+LPPG+++ +MYKV+TPF+ A ++ L + + P +R +G Sbjct: 121 LRN-VVCEGFDDGVILPPGAVMTGNHEMYKVFTPFKNAWLKRLREGMPECVAAPKVRSSG 179 Query: 187 PVTPSNIPRF-FDYPFQAIDPM-FPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244 + P+ P +YP Q D FP+ E+ A+ LR+FC+ Y +QRD PA++GTS+ Sbjct: 180 SIDPA--PSITLNYPRQPFDTAHFPVEEKAAIAQLRQFCQNGAGEYEQQRDFPAVEGTSR 237 Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFS-WLNELIWREFYRHLMAFYPSVCM 303 LS L+ G LSPRQC +RL E L GA S WLNELIWREFYRHLM +YP +C Sbjct: 238 LSASLATGGLSPRQCLHRLLAEQPQAL---DGGAGSVWLNELIWREFYRHLMTYYPLLCK 294 Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363 +PFI WT++++W ++ +AW++G TG+PI+DAAMRQLN+ GWMHNRLRMITASFLVK Sbjct: 295 HRPFIVWTDRVQWQRNPAHFKAWQEGKTGYPIVDAAMRQLNSTGWMHNRLRMITASFLVK 354 Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423 DLL+DWR GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG++FD +G Sbjct: 355 DLLIDWREGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGEKFDREGE 414 Query: 424 FIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481 FIR WLPEL +VP + +H P W K ++L+YP PIVDHK+A TL Y A+K + Sbjct: 415 FIRQWLPELRDVPGKVVHEPWKWAQKAGVTLDYPQPIVDHKEARLRTLAAYEEARKGA 472 >gi|333010183|gb|EGK29618.1| deoxyribodipyrimidine photo-lyase [Shigella flexneri K-272] gi|333021140|gb|EGK40397.1| deoxyribodipyrimidine photo-lyase [Shigella flexneri K-227] Length = 472 Score = 527 bits (1358), Expect = e-147, Method: Compositional matrix adjust. Identities = 254/476 (53%), Positives = 334/476 (70%), Gaps = 9/476 (1%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M+ HL W R DLR+ DN AL AAC NS A+V+A++IATP QW H +S RQ+ I A L Sbjct: 1 MTTHLAWFRQDLRLHDNLALAAACRNSSARVLALYIATPRQWETHNMSPRQAELINAQLN 60 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 +Q +L++KGI + + +F S+E + C + VT LFYN QYE+NE RD +E+ Sbjct: 61 GLQIALAEKGIPLLFREVDDFVASVEIVKQVCAENSVTHLFYNYQYEVNERARDVDVERA 120 Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 L++ V+C+ FDDSV+LPPG+++ +MYKV+TPF+ A ++ L + + P +R +G Sbjct: 121 LRN-VVCEGFDDSVILPPGAVMTGNHEMYKVFTPFKNAWLKRLREGMPECVAAPKVRSSG 179 Query: 187 PVTPSNIPRF-FDYPFQAIDPM-FPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244 + P+ P +YP Q+ D FP+ E+ A+ LR+FC+ Y +QRD PA++GTS+ Sbjct: 180 SIKPA--PSITLNYPRQSFDTAHFPVEEKAAIAQLRQFCENGAGEYEQQRDFPAVEGTSR 237 Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFS-WLNELIWREFYRHLMAFYPSVCM 303 LS L+ G LSPRQC +RL E L GA S WL+ELIWREFYRHLM +YPS+C Sbjct: 238 LSASLATGGLSPRQCLHRLLAEQPQAL---DGGAGSVWLSELIWREFYRHLMTYYPSLCK 294 Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363 +PFI WT++++W + LQAW++G TG+PIIDAAMRQLN+ GWMHNRLRMITASFLVK Sbjct: 295 HRPFIVWTDRVQWQSNPAHLQAWQKGKTGYPIIDAAMRQLNSTGWMHNRLRMITASFLVK 354 Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423 DLL+DWR GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNP QG++FD +G Sbjct: 355 DLLIDWREGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPITQGEKFDREGE 414 Query: 424 FIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479 FIR WLPEL NVP + +H P W K + L+YP PIV+HK+A TL Y AA+K Sbjct: 415 FIRRWLPELRNVPGKAVHEPWKWAQKAGVKLDYPQPIVEHKEARVQTLAAYEAARK 470 >gi|168820166|ref|ZP_02832166.1| deoxyribodipyrimidine photo-lyase [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|205343136|gb|EDZ29900.1| deoxyribodipyrimidine photo-lyase [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] Length = 473 Score = 527 bits (1357), Expect = e-147, Method: Compositional matrix adjust. Identities = 253/477 (53%), Positives = 335/477 (70%), Gaps = 6/477 (1%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M HLVW R DLR+ DN AL AAC ++ A+V+A++I+TP QW+ H ++ RQ+ FI A L Sbjct: 1 MPTHLVWFRRDLRLQDNLALAAACRDASARVLALYISTPAQWQAHDMAPRQAAFISAQLN 60 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 +Q +L++KGI +H+ ++F+ SIE + + C Q V+ LFYN QYE NE +RD +EK Sbjct: 61 ALQTALAEKGIPLLFHEVADFNASIETVKNVCRQHDVSHLFYNYQYEFNERQRDAAVEKT 120 Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 L VIC+ FDDSV+L PG+++ +MYKV+TPF+ A ++ L + +P P IR++G Sbjct: 121 LPS-VICEGFDDSVILAPGAVMTGNHEMYKVFTPFKNAWLKRLKEDIPPCVPAPKIRVSG 179 Query: 187 PVTPSNIPRFFDYPFQAIDP-MFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245 ++ P +YP QA D +FP+ E + LR+FC + Y +RD PA+ GTS+L Sbjct: 180 ALSTPLTPVSLNYPQQAFDAALFPVEENAVIAQLRQFCAQGADEYALRRDFPAVDGTSRL 239 Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFS-WLNELIWREFYRHLMAFYPSVCMG 304 S L+ G LSPRQC +RL E L G S WLNELIWREFYRHLM +YP++C Sbjct: 240 SASLATGGLSPRQCLHRLLAEQPQAL---DGGPGSVWLNELIWREFYRHLMTWYPALCKH 296 Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364 +PFI WT ++ W ++ H QAW++G TG+PI+DAAMRQLN GWMHNRLRMITASFLVKD Sbjct: 297 QPFIRWTIRVAWQENPHYFQAWQKGETGYPIVDAAMRQLNATGWMHNRLRMITASFLVKD 356 Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424 LL+DWR+GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG+RFD G F Sbjct: 357 LLIDWRLGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGERFDRDGEF 416 Query: 425 IRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481 IR WLP L ++P + IH P W +K + L+YP PIV+HK+A TL+ Y AA+K + Sbjct: 417 IRQWLPALRDIPGKAIHEPWRWAEKAGVVLDYPRPIVEHKQARIATLSAYEAARKGA 473 >gi|218549732|ref|YP_002383523.1| deoxyribodipyrimidine photolyase [Escherichia fergusonii ATCC 35469] gi|218357273|emb|CAQ89908.1| deoxyribodipyrimidine photolyase, FAD-binding [Escherichia fergusonii ATCC 35469] Length = 472 Score = 527 bits (1357), Expect = e-147, Method: Compositional matrix adjust. Identities = 255/478 (53%), Positives = 337/478 (70%), Gaps = 9/478 (1%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M+ HLVW R DLR+ DN AL AAC NS A+V+A+ IATP QW H +S RQ+ I A L Sbjct: 1 MTTHLVWFRQDLRLHDNLALAAACRNSSARVLALNIATPRQWAAHNMSPRQAELINAQLN 60 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 ++ +L++KGI + + +F S+E + C + RVT LFYN QYE+NE RD +E+ Sbjct: 61 GLRIALAEKGIPLLFREVDDFVASVEIVKQVCAENRVTHLFYNYQYEVNERARDVEVERA 120 Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 L++ V+C+ FDDSV+LPPG+++ +MYKV+TPF+ A ++ L + + P +R +G Sbjct: 121 LRN-VVCEGFDDSVILPPGAVMTGNHEMYKVFTPFKNAWLKRLREGMPECVAAPKVRSSG 179 Query: 187 PV-TPSNIPRFFDYPFQAIDPM-FPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244 + T +I +YP Q+ D FP+ E+ A+ LR+FC+ Y +QRD PA++GTS+ Sbjct: 180 SIETAPSIT--LNYPRQSFDTAHFPVEEKAAIAQLRQFCQNGAGEYEQQRDFPAVEGTSR 237 Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFS-WLNELIWREFYRHLMAFYPSVCM 303 LS L+ G LSPRQC +RL E L GA S WLNELIWREFYRHLM +YPS+C Sbjct: 238 LSASLATGRLSPRQCLHRLLAEQPQAL---DGGAGSVWLNELIWREFYRHLMTYYPSLCK 294 Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363 +PFI WT++++W + L+AW++G TG+PI+DAAMRQLN+ GWMHNRLRMITASFLVK Sbjct: 295 HRPFIAWTDRVQWQSNPAHLKAWQEGKTGYPIVDAAMRQLNSSGWMHNRLRMITASFLVK 354 Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423 DLL+DWR GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG++FD +G Sbjct: 355 DLLIDWREGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGEKFDHEGE 414 Query: 424 FIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481 FIR WLPEL +VP + +H P W K ++L+YP PIVDHK+A TL Y AKK + Sbjct: 415 FIRQWLPELRDVPGKAVHEPWKWAQKAGVTLDYPQPIVDHKEARLRTLAAYEEAKKGA 472 >gi|74311231|ref|YP_309650.1| deoxyribodipyrimidine photolyase [Shigella sonnei Ss046] gi|73854708|gb|AAZ87415.1| deoxyribodipyrimidine photolyase (photoreactivation) [Shigella sonnei Ss046] gi|323163860|gb|EFZ49670.1| deoxyribodipyrimidine photo-lyase [Shigella sonnei 53G] Length = 472 Score = 527 bits (1357), Expect = e-147, Method: Compositional matrix adjust. Identities = 253/476 (53%), Positives = 334/476 (70%), Gaps = 9/476 (1%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M+ HLVW R DLR+ DN AL AAC NS A+V+A++IATP QW H +S RQ+ I A L Sbjct: 1 MTTHLVWFRQDLRLHDNLALAAACRNSSARVLALYIATPRQWATHNMSPRQAELINAQLN 60 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 +Q +L++KGI + + +F S+E + C + VT LFYN QYE+NE RD +E+ Sbjct: 61 GLQIALAEKGIPLLFREVDDFVASVEIVKQVCAENSVTHLFYNYQYEVNERARDVEVERA 120 Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 L++ V+C+ FDDSV+LPPG+++ +MYKV+TPF+ A ++ L + + P +R +G Sbjct: 121 LRN-VVCEGFDDSVILPPGAVMTGNHEMYKVFTPFKNAWLKRLREGMPECVAAPKVRSSG 179 Query: 187 PVTPSNIPRF-FDYPFQAIDPM-FPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244 + PS P +YP Q+ D FP+ E+ A+ LR+FC+ Y +QRD PA++GTS+ Sbjct: 180 SIEPS--PSITLNYPRQSFDTAHFPVEEKAAIAQLRQFCQNGAGEYEQQRDFPAVEGTSR 237 Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFS-WLNELIWREFYRHLMAFYPSVCM 303 LS L+ G LSPRQC +RL E L G S WLNELIWREFYRHL+ ++PS+C Sbjct: 238 LSASLATGGLSPRQCLHRLLAEQPQAL---DGGVGSVWLNELIWREFYRHLITYHPSLCK 294 Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363 +P I WT++++W + LQAW++G TG+PI+DAAMRQLN+ GWMHNRLRMITASFLVK Sbjct: 295 HRPIIAWTDRVQWQSNPAHLQAWQEGKTGYPIVDAAMRQLNSTGWMHNRLRMITASFLVK 354 Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423 DLL+DWR GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG++FD +G Sbjct: 355 DLLIDWREGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGEKFDLEGE 414 Query: 424 FIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479 FIR WLPEL NVP + +H P W K + L+YP PIV+HK+A TL Y AA+K Sbjct: 415 FIRQWLPELRNVPGKSVHEPWKWAQKAGVKLDYPQPIVEHKEARVQTLAAYEAARK 470 >gi|238893748|ref|YP_002918482.1| deoxyribodipyrimidine photolyase [Klebsiella pneumoniae NTUH-K2044] gi|238546064|dbj|BAH62415.1| deoxyribodipyrimidine photolyase [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044] Length = 480 Score = 527 bits (1357), Expect = e-147, Method: Compositional matrix adjust. Identities = 256/474 (54%), Positives = 325/474 (68%), Gaps = 5/474 (1%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M+ HLVWLR DLRI DN AL AAC + A+V+A++IATP QWR+H ++ RQ+ FI + L Sbjct: 1 MATHLVWLRTDLRIHDNLALAAACRDPQAQVLALYIATPGQWREHHLAPRQAAFIASHLQ 60 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 + +L+++GI + +F S+E L +C Q + + LFYN QYE NE +RD +E Sbjct: 61 SLHAALAERGIPLWVEEADDFTASVERLADFCQQHQASHLFYNYQYEFNERQRDAAVENT 120 Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 L+ VIC+ FDDSVLLPPGS+L +MYKV+TPF+ A I+ L + P R Sbjct: 121 LRD-VICQGFDDSVLLPPGSVLTGGGEMYKVFTPFKNAFIRRLRDGLPACVAAPKPRQAP 179 Query: 187 PVTPSNIPRFFDYPFQAIDPM-FPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245 +P +YP D + F E+ AL LR FC++ Y QRD PA++GTS+L Sbjct: 180 ARQAPPLPEL-NYPQTPFDGLLFAADEKTALARLRAFCQQAAADYEGQRDFPAVEGTSRL 238 Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305 SP L+IGVLSPRQC +RL E L +GA +WLNELIWREFYRHLM +YP +C G+ Sbjct: 239 SPCLAIGVLSPRQCLHRLLTEHPAAL-DGGAGA-TWLNELIWREFYRHLMVYYPKLCKGR 296 Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365 PF WT+K+ W + LQAW++G TGFPI+DAAMRQLN GWMHNRLRMI ASFL KDL Sbjct: 297 PFTAWTDKVAWRAEEAALQAWQRGETGFPIVDAAMRQLNATGWMHNRLRMIVASFLTKDL 356 Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425 +DWR GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG++FD QG FI Sbjct: 357 RLDWRAGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGEKFDKQGVFI 416 Query: 426 RHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479 R WLPEL VP + +H P +W DK ++L+Y PIVDHK+A TL + AA+K Sbjct: 417 RRWLPELAKVPEKALHQPWAWADKQGITLDYSRPIVDHKQARQETLAAWEAARK 470 >gi|331682139|ref|ZP_08382761.1| deoxyribodipyrimidine photo-lyase (DNA photolyase)(Photoreactivating enzyme) [Escherichia coli H299] gi|331080563|gb|EGI51739.1| deoxyribodipyrimidine photo-lyase (DNA photolyase)(Photoreactivating enzyme) [Escherichia coli H299] Length = 472 Score = 526 bits (1356), Expect = e-147, Method: Compositional matrix adjust. Identities = 254/476 (53%), Positives = 333/476 (69%), Gaps = 9/476 (1%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M+ HLVW R DLR DN AL AAC NS A V+A++IATP QW H +S RQ+ I A L Sbjct: 1 MTTHLVWFRQDLRQHDNLALAAACRNSSASVLALYIATPRQWAAHNMSPRQAELINAQLN 60 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 +Q +L++KGI + + +F S+E + C + VT LFYN QYE+NE RD +E+ Sbjct: 61 GLQIALAEKGIPLLFREVDDFAASVEIVKQVCAENSVTHLFYNYQYEVNERARDVQVERT 120 Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 L++ V+C+ FDDSV+LPPG+++ +MYKV+TPF+ A ++ L + + P +R +G Sbjct: 121 LRN-VVCEGFDDSVILPPGAVMTDNHEMYKVFTPFQNAWLKRLREGMPECVAAPKVRSSG 179 Query: 187 PVTPSNIPRF-FDYPFQAIDPM-FPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244 + P+ P +YP Q+ D FP+ E+ A+ LR+FC+ Y +QRD PA++GTS+ Sbjct: 180 SIKPA--PSITLNYPRQSFDTAHFPVEEKAAIAQLRQFCQNGAGEYEQQRDFPAVEGTSR 237 Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFS-WLNELIWREFYRHLMAFYPSVCM 303 LS L+ G LSPRQC +RL E L GA S WL+ELIWREFYRHLM +YPS+C Sbjct: 238 LSASLATGGLSPRQCLHRLLAEQPQAL---DGGAGSVWLSELIWREFYRHLMTYYPSLCK 294 Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363 PFI WT++++W + LQAW++G TG+PI+DAAMRQLN+ GWMHNRLRMITASFLVK Sbjct: 295 HCPFIAWTDRVQWQSNPAHLQAWQEGKTGYPIVDAAMRQLNSTGWMHNRLRMITASFLVK 354 Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423 DLL+DWR GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG++FD +G Sbjct: 355 DLLIDWREGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGEKFDREGE 414 Query: 424 FIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479 FIR WLPEL +VP + +H P W K ++L+YP PIVDHK+A TL Y A+K Sbjct: 415 FIRQWLPELRDVPGKVVHEPWKWAQKAGMTLDYPQPIVDHKEARLRTLAAYEEARK 470 >gi|193070647|ref|ZP_03051584.1| deoxyribodipyrimidine photolyase [Escherichia coli E110019] gi|260866839|ref|YP_003233241.1| deoxyribodipyrimidine photolyase, FAD-binding [Escherichia coli O111:H- str. 11128] gi|300906963|ref|ZP_07124633.1| FAD binding domain of DNA photolyase [Escherichia coli MS 84-1] gi|301305193|ref|ZP_07211291.1| FAD binding domain of DNA photolyase [Escherichia coli MS 124-1] gi|192956035|gb|EDV86501.1| deoxyribodipyrimidine photolyase [Escherichia coli E110019] gi|257763195|dbj|BAI34690.1| deoxyribodipyrimidine photolyase, FAD-binding [Escherichia coli O111:H- str. 11128] gi|300401266|gb|EFJ84804.1| FAD binding domain of DNA photolyase [Escherichia coli MS 84-1] gi|300839505|gb|EFK67265.1| FAD binding domain of DNA photolyase [Escherichia coli MS 124-1] gi|315257624|gb|EFU37592.1| FAD binding domain of DNA photolyase [Escherichia coli MS 85-1] gi|323180055|gb|EFZ65611.1| deoxyribodipyrimidine photo-lyase [Escherichia coli 1180] Length = 472 Score = 526 bits (1356), Expect = e-147, Method: Compositional matrix adjust. Identities = 254/476 (53%), Positives = 334/476 (70%), Gaps = 9/476 (1%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M+ HLVW R DLR+ DN AL AAC NS A+V+A++IATP QW H +S RQ+ I A L Sbjct: 1 MTTHLVWFRQDLRLHDNLALAAACRNSSARVLALYIATPRQWATHNMSPRQAELINAQLN 60 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 +Q +L++KGI + + +F S+E + C + VT LFYN QYE+NE RD +E+ Sbjct: 61 GLQIALAEKGIPLLFREVDDFVASVEIVKQVCAENSVTHLFYNYQYEVNERARDVEVERA 120 Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 L++ V+C+ FDDSV+LPPG+++ +MYKV+TPF+ A ++ L + + P +R +G Sbjct: 121 LRN-VVCEGFDDSVILPPGAVMTGNHEMYKVFTPFKNAWLKRLREGMPECVAAPKVRSSG 179 Query: 187 PVTPSNIPRF-FDYPFQAIDPM-FPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244 + PS P +YP Q+ D FP+ E+ A+ LR+FC+ Y +QRD PA++GTS+ Sbjct: 180 SIEPS--PSITLNYPRQSFDTAHFPVEEKAAIAQLRQFCQNGAGEYEQQRDFPAVEGTSR 237 Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFS-WLNELIWREFYRHLMAFYPSVCM 303 LS L+ G LSPRQC +RL E L GA S WL+ELIWREFYRHLM +YPS+C Sbjct: 238 LSASLATGGLSPRQCLHRLLAEQPQAL---DGGAGSVWLSELIWREFYRHLMTYYPSLCK 294 Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363 PFI WT++++W + LQAW++G TG+PI+DAAMRQLN+ GWMHNRLRMI+ASFLVK Sbjct: 295 HCPFIAWTDRVQWQSNPAHLQAWQEGKTGYPIVDAAMRQLNSTGWMHNRLRMISASFLVK 354 Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423 DLL+DWR GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG++FD +G Sbjct: 355 DLLIDWREGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGEKFDREGE 414 Query: 424 FIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479 FIR WLPEL +VP + +H P W K + L+YP PIVDHK+A TL Y A+K Sbjct: 415 FIRRWLPELRDVPGKAVHEPWKWAQKAGVMLDYPQPIVDHKEARLRTLAAYEEARK 470 >gi|110804662|ref|YP_688182.1| deoxyribodipyrimidine photolyase [Shigella flexneri 5 str. 8401] gi|110614210|gb|ABF02877.1| deoxyribodipyrimidine photolyase [Shigella flexneri 5 str. 8401] gi|332760931|gb|EGJ91219.1| deoxyribodipyrimidine photo-lyase [Shigella flexneri 4343-70] gi|333008008|gb|EGK27484.1| deoxyribodipyrimidine photo-lyase [Shigella flexneri K-218] Length = 472 Score = 526 bits (1355), Expect = e-147, Method: Compositional matrix adjust. Identities = 253/476 (53%), Positives = 334/476 (70%), Gaps = 9/476 (1%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M+ HL W R DLR+ DN AL AAC NS A+V+A++IATP QW H +S RQ+ I A L Sbjct: 1 MTTHLAWFRQDLRLHDNLALAAACRNSSARVLALYIATPRQWETHNMSPRQAELINAQLN 60 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 +Q +L++KGI + + +F S+E + C + VT LFYN QYE+NE RD +E+ Sbjct: 61 GLQIALAEKGIPLLFREVDDFVASVEIVKQVCAENSVTHLFYNYQYEVNERARDVDVERA 120 Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 L++ V+C+ FDDSV+LPPG+++ +MYKV+TPF+ A ++ L + + P +R +G Sbjct: 121 LRN-VVCEGFDDSVILPPGAVMTGNHEMYKVFTPFKNAWLKRLREGMPECVAAPKVRSSG 179 Query: 187 PVTPSNIPRF-FDYPFQAIDPM-FPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244 + P+ P +YP Q+ D FP+ E+ A+ LR+FC+ Y +QRD PA++GTS+ Sbjct: 180 SIKPA--PSITLNYPRQSFDTAHFPVEEKAAIAQLRQFCENGAGEYEQQRDFPAVEGTSR 237 Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFS-WLNELIWREFYRHLMAFYPSVCM 303 LS L+ G LSPRQC +RL E L GA S WL+ELIWREFYRHLM +YPS+C Sbjct: 238 LSASLATGGLSPRQCLHRLLAEQPQAL---DGGAGSVWLSELIWREFYRHLMTYYPSLCK 294 Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363 +PFI WT++++W + LQAW++G TG+PIIDAAMRQLN+ GWMHNRLRMITASFLVK Sbjct: 295 HRPFIAWTDRVQWQSNPAHLQAWQKGKTGYPIIDAAMRQLNSTGWMHNRLRMITASFLVK 354 Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423 DLL+DWR GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNP QG++FD +G Sbjct: 355 DLLIDWREGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPITQGEKFDREGE 414 Query: 424 FIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479 FIR WLPEL +VP + +H P W K + L+YP PIV+HK+A TL Y AA+K Sbjct: 415 FIRRWLPELRDVPGKAVHEPWKWAQKAGVKLDYPQPIVEHKEARVQTLAAYEAARK 470 >gi|152969283|ref|YP_001334392.1| deoxyribodipyrimidine photolyase [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|150954132|gb|ABR76162.1| deoxyribodipyrimidine photolyase (photoreactivation) [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] Length = 480 Score = 526 bits (1355), Expect = e-147, Method: Compositional matrix adjust. Identities = 257/474 (54%), Positives = 325/474 (68%), Gaps = 5/474 (1%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M+ HLVWLR DLRI DN AL AAC + A+V+A++IATP QWR+H ++ RQ+ FI + L Sbjct: 1 MATHLVWLRTDLRIHDNLALAAACRDPQAQVLALYIATPGQWREHHLAPRQAAFIASHLQ 60 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 + +L+++GI + +F S+E L +C Q +V+ LFYN QYE NE +RD +E Sbjct: 61 SLHAALAERGIPLWVEEADDFTASVERLADFCQQHQVSHLFYNYQYEFNERQRDAAVENT 120 Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 L VIC+ FDDSVLLPPGS+L +MYKV+TPF+ A I+ L + P R Sbjct: 121 LCD-VICQGFDDSVLLPPGSVLTGGGEMYKVFTPFKNAFIRRLRDGLPACVAAPKPRQAP 179 Query: 187 PVTPSNIPRFFDYPFQAIDPM-FPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245 +P +YP D + F E+ AL LR FC++ Y QRD PA++GTS+L Sbjct: 180 ARQAPPLPEL-NYPQTPFDGLLFAADEKTALARLRAFCQQAAADYEGQRDFPAVEGTSRL 238 Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305 SP L+IGVLSPRQC +RL E L +GA +WLNELIWREFYRHLM +YP +C G+ Sbjct: 239 SPCLAIGVLSPRQCLHRLLTEHPAAL-DGGAGA-TWLNELIWREFYRHLMVYYPKLCKGR 296 Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365 PF WT+K+ W + LQAW++G TGFPI+DAAMRQLN GWMHNRLRMI ASFL KDL Sbjct: 297 PFTAWTDKVAWRAEEASLQAWQRGETGFPIVDAAMRQLNATGWMHNRLRMIVASFLTKDL 356 Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425 +DWR GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG++FD QG FI Sbjct: 357 RLDWRAGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGEKFDKQGVFI 416 Query: 426 RHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479 R WLPEL VP + +H P +W DK ++L+Y PIVDHK+A TL + AA+K Sbjct: 417 RRWLPELAKVPEKALHQPWAWADKQGITLDYSRPIVDHKQARQETLAAWEAARK 470 >gi|324114816|gb|EGC08784.1| DNA photolyase [Escherichia fergusonii B253] Length = 472 Score = 526 bits (1355), Expect = e-147, Method: Compositional matrix adjust. Identities = 253/478 (52%), Positives = 335/478 (70%), Gaps = 9/478 (1%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M+ HLVW R DLR+ DN AL AAC NS A+V+A++IATP QW H +S RQ+ I A L Sbjct: 1 MTTHLVWFRQDLRLHDNLALAAACRNSSARVLALYIATPRQWAAHNMSPRQAELINAQLN 60 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 ++ +L++KGI + + +F S+E + C + RVT LFYN QYE+NE RD +E R Sbjct: 61 GLRIALAEKGIPLLFREVDDFVASVEIVKQVCAENRVTHLFYNYQYEVNERARDVEVE-R 119 Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 + V+C+ FDDSV+LPPG+++ +MYKV+TPF+ A ++ L + + P +R +G Sbjct: 120 ARRNVVCEGFDDSVILPPGAVMTGNHEMYKVFTPFKNAWLKRLREGMPECVAAPKVRSSG 179 Query: 187 PVTPSNIPRF-FDYPFQAIDPM-FPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244 + P+ P +YP Q+ D FP+ E+ + LR+FC+ Y +QRD PA++GTS+ Sbjct: 180 SLDPA--PSITLNYPRQSFDTAHFPVEEKAVIAQLRQFCQSGAGEYEQQRDFPAVEGTSR 237 Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFS-WLNELIWREFYRHLMAFYPSVCM 303 LS L+ G LSPRQC +RL E L GA S WLNELIWREFYRHLM ++PS+C Sbjct: 238 LSASLATGRLSPRQCLHRLLAEQPQAL---DGGAGSVWLNELIWREFYRHLMTYHPSLCK 294 Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363 +PFI WT++++W + L+AW++G TG+PI+DAAMRQLN+ GWMHNRLRMITASFLVK Sbjct: 295 HRPFIAWTDRVQWQSNPAHLKAWQEGKTGYPIVDAAMRQLNSTGWMHNRLRMITASFLVK 354 Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423 DLL+DWR GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG++FD +G Sbjct: 355 DLLIDWREGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGEKFDHEGE 414 Query: 424 FIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481 FIR WLPEL +VP + +H P W K ++L+YP PIVDHK+A TL Y AKK + Sbjct: 415 FIRQWLPELRDVPGKAVHEPWKWAQKAGVTLDYPQPIVDHKEARLRTLAVYEEAKKGA 472 >gi|260597109|ref|YP_003209680.1| deoxyribodipyrimidine photolyase [Cronobacter turicensis z3032] gi|260216286|emb|CBA29241.1| Deoxyribodipyrimidine photo-lyase [Cronobacter turicensis z3032] Length = 473 Score = 526 bits (1355), Expect = e-147, Method: Compositional matrix adjust. Identities = 261/475 (54%), Positives = 337/475 (70%), Gaps = 3/475 (0%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M+ HLVW R DLR+ DN AL AAC + DA+VI +FIATP+QWR H ++ RQ+ FI+ +L Sbjct: 1 MTTHLVWFRADLRVNDNLALAAACRDPDARVIGLFIATPQQWRDHTLAPRQAAFIHQNLE 60 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 +Q++L+ +GI + +F +++ L ++C +Q+V LFYN QYE+NE RRD + +R Sbjct: 61 ALQQALATRGIALFTREAPDFAAAVDALAAFCDEQQVAALFYNYQYELNEARRDAAVARR 120 Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 L+ RV C+ FDDSV+LPPGS + +MYKV+TP+ +A I+ L + + P R G Sbjct: 121 LEGRVACQGFDDSVMLPPGSAVTGNGEMYKVFTPYSRAFIRRLGEGLPPCVSAPKPRAGG 180 Query: 187 PVTPSNIPRFFDYPFQAIDPM-FPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245 +T + FDYP + D M FP GE+ AL LR FC+ Y E+RD PAI+GTS L Sbjct: 181 ALTDAPALAPFDYPCETPDGMLFPAGEEAALKRLRDFCRHDAGDYPEKRDFPAIRGTSLL 240 Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305 SPYL+IGVLSPRQC +RL E L + SGA WLNELIWREFYRHL+ +P +C + Sbjct: 241 SPYLAIGVLSPRQCLHRLLTEHPRAL-EGGSGAV-WLNELIWREFYRHLIVAWPHLCRHQ 298 Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365 PFI WT ++ W ++ QAW +G TG+PI+DAAMRQ+N GWMHNRLRMITASFLVKDL Sbjct: 299 PFIDWTARVAWQRNDAHFQAWCEGNTGYPIVDAAMRQMNATGWMHNRLRMITASFLVKDL 358 Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425 LVDWR GE YFMSQL+DGD A+NNGGWQWAASTG D+ PYFRIFNPT QG+RFD +G FI Sbjct: 359 LVDWRRGERYFMSQLIDGDFAANNGGWQWAASTGTDAAPYFRIFNPTTQGQRFDAEGEFI 418 Query: 426 RHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQ 480 R W+PEL+++P + +H PH W KN +L YP PIVDHK+A TL Y AA+K+ Sbjct: 419 RRWVPELSHIPGKAVHEPHVWAKKNGKALRYPQPIVDHKQARVATLAAYEAARKE 473 >gi|300918366|ref|ZP_07134966.1| FAD binding domain of DNA photolyase [Escherichia coli MS 115-1] gi|300414429|gb|EFJ97739.1| FAD binding domain of DNA photolyase [Escherichia coli MS 115-1] Length = 472 Score = 526 bits (1355), Expect = e-147, Method: Compositional matrix adjust. Identities = 253/476 (53%), Positives = 335/476 (70%), Gaps = 9/476 (1%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M+ HLVW R DLR+ DN AL AAC NS A+V+A++IATP QW H +S RQ+ I A L Sbjct: 1 MTTHLVWFRQDLRLHDNLALAAACRNSSARVLALYIATPRQWATHNMSPRQAELINAQLN 60 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 +Q +L++KGI + + +F S+E + C + VT LFYN QYE+NE RD +E+ Sbjct: 61 GLQIALAEKGIPLLFREVDDFVASVEIVKQVCAENSVTHLFYNYQYEVNERARDVEVERA 120 Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 L++ V+C+ FDDSV+LPPG+++ +MYKV+TPF+ A ++ L + + P +R +G Sbjct: 121 LRN-VVCEGFDDSVILPPGAVMTGNHEMYKVFTPFKNAWLKRLREGMPECVAAPKVRSSG 179 Query: 187 PVTPSNIPRF-FDYPFQAIDPM-FPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244 + P+ P +YP Q+ D FP+ E+ A+ LR+FC+ Y +QRD PA++GTS+ Sbjct: 180 SIKPA--PSITLNYPRQSFDTAHFPVEEKAAIAQLRQFCQNGAGEYEQQRDFPAVEGTSR 237 Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFS-WLNELIWREFYRHLMAFYPSVCM 303 LS L+ G LSPRQC +RL E L GA S WL+ELIWREFYRHLM +YPS+C Sbjct: 238 LSASLATGGLSPRQCLHRLLAEQPQAL---DGGAGSVWLSELIWREFYRHLMTYYPSLCK 294 Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363 PFI WT++++W + LQAW++G TG+PI+DAAMRQLN+ GWMHNRLRMITASFLVK Sbjct: 295 HCPFIAWTDRVQWQSNPAHLQAWQEGKTGYPIVDAAMRQLNSTGWMHNRLRMITASFLVK 354 Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423 DLL+DWR GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNP QG++FD +G Sbjct: 355 DLLIDWREGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPITQGEKFDHEGE 414 Query: 424 FIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479 FIR WLPEL +VP + +H P W K ++L+YP PIV+HK+A TL Y AA+K Sbjct: 415 FIRQWLPELRDVPGKVVHEPWKWAQKAGVTLDYPQPIVEHKEARVQTLAAYEAARK 470 >gi|194433989|ref|ZP_03066260.1| deoxyribodipyrimidine photolyase [Shigella dysenteriae 1012] gi|194417754|gb|EDX33852.1| deoxyribodipyrimidine photolyase [Shigella dysenteriae 1012] gi|332096470|gb|EGJ01466.1| deoxyribodipyrimidine photo-lyase [Shigella dysenteriae 155-74] Length = 472 Score = 526 bits (1354), Expect = e-147, Method: Compositional matrix adjust. Identities = 252/476 (52%), Positives = 335/476 (70%), Gaps = 9/476 (1%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M+ HL W R DLR+ DN AL AAC NS A+V+A++IATP QW H +S RQ+ I A L Sbjct: 1 MTTHLAWFRQDLRLHDNLALAAACRNSSARVLALYIATPRQWETHNMSPRQAELINAQLN 60 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 +Q +L++KGI + + +F S+E + C + VT LFYN QYE+NE RD +E+ Sbjct: 61 GLQIALAEKGIPLLFREVDDFVASVEIVKQVCAENSVTHLFYNYQYEVNERARDVDVERA 120 Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 L++ V+C+ FDDSV+LPPG+++ +MYKV+TPF+ A ++ L + + P +R +G Sbjct: 121 LRN-VVCEGFDDSVILPPGAVMTGNHEMYKVFTPFKNAWLKRLREGMPECVAAPKVRSSG 179 Query: 187 PVTPSNIPRF-FDYPFQAIDPM-FPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244 + P+ P +YP Q+ D FP+ E+ A+ LR+FC+ Y +QRD PA++GTS+ Sbjct: 180 SIKPA--PSITLNYPRQSFDTAHFPVEEKAAIAQLRQFCENGAGEYEQQRDFPAVEGTSR 237 Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFS-WLNELIWREFYRHLMAFYPSVCM 303 LS L+ G LSPRQC +RL E L GA S WL+ELIWREFYRHLM +YPS+C Sbjct: 238 LSVSLATGGLSPRQCLHRLLAEQPQAL---DGGAGSVWLSELIWREFYRHLMTYYPSLCK 294 Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363 +PFI WT++++W + LQAW++G TG+PI+DAAMRQLN+ GWMHNRLRMITASFLVK Sbjct: 295 HRPFIAWTDRVQWQSNPAHLQAWQKGKTGYPIVDAAMRQLNSTGWMHNRLRMITASFLVK 354 Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423 DLL+DWR GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNP QG++FD +G Sbjct: 355 DLLIDWREGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPITQGEKFDREGE 414 Query: 424 FIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479 FIR WLPEL +VP + +H P W+ K + L+YP PIV+HK+A TL Y AA+K Sbjct: 415 FIRRWLPELRDVPGKAVHEPWKWVQKAGVKLDYPQPIVEHKEARVQTLAAYEAARK 470 >gi|191167217|ref|ZP_03029036.1| deoxyribodipyrimidine photolyase [Escherichia coli B7A] gi|309797420|ref|ZP_07691812.1| FAD binding domain of DNA photolyase [Escherichia coli MS 145-7] gi|190902765|gb|EDV62495.1| deoxyribodipyrimidine photolyase [Escherichia coli B7A] gi|308118944|gb|EFO56206.1| FAD binding domain of DNA photolyase [Escherichia coli MS 145-7] Length = 472 Score = 525 bits (1353), Expect = e-147, Method: Compositional matrix adjust. Identities = 253/478 (52%), Positives = 335/478 (70%), Gaps = 9/478 (1%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M+ HLVW R DLR+ DN AL AAC NS A+V+A++IATP QW H +S RQ+ I A L Sbjct: 1 MTTHLVWFRQDLRLHDNLALAAACRNSSARVLALYIATPRQWATHNMSPRQAELINAQLN 60 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 +Q +L++KGI + + +F S+E + C + VT LFYN QYE+NE RD +E+ Sbjct: 61 GLQIALAEKGIPLLFREVDDFVASVEIVKQVCAENSVTHLFYNYQYEVNERARDVEVERA 120 Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 L++ V+C+ FDDSV+LPPG+++ +MYKV+TPF+ A ++ L + + P +R +G Sbjct: 121 LRN-VVCEGFDDSVILPPGAVMTGNHEMYKVFTPFKNAWLKRLREGMPECVAAPKVRSSG 179 Query: 187 PVTPSNIPRF-FDYPFQAIDPM-FPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244 + P+ P +YP Q+ D FP+ E+ A+ LR+FC+ Y +QRD PA++GTS+ Sbjct: 180 SIEPA--PSITLNYPRQSFDTAHFPVEEKAAIAQLRQFCQNGAGEYEQQRDFPAVEGTSR 237 Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFS-WLNELIWREFYRHLMAFYPSVCM 303 LS L+ G LSPRQC +RL E L GA S WL+ELIWREFYRHLM +YPS+C Sbjct: 238 LSASLATGGLSPRQCLHRLLAEQPQAL---DGGAGSVWLSELIWREFYRHLMTYYPSLCK 294 Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363 PFI WT++++W + LQAW++G TG+PI+DAAMRQLN+ GWMHNRLRMI+ASFLVK Sbjct: 295 HCPFIAWTDRVQWQSNPAHLQAWQEGKTGYPIVDAAMRQLNSTGWMHNRLRMISASFLVK 354 Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423 DLL+DWR GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG++FD +G Sbjct: 355 DLLIDWREGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGEKFDREGE 414 Query: 424 FIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481 FIR WLPEL +VP + +H P W K + L+YP PIVDHK+A TL Y A+K + Sbjct: 415 FIRRWLPELRDVPGKAVHEPWKWAQKAGVMLDYPQPIVDHKEARLRTLAAYEEARKGA 472 >gi|323947030|gb|EGB43044.1| DNA photolyase [Escherichia coli H120] Length = 472 Score = 525 bits (1353), Expect = e-147, Method: Compositional matrix adjust. Identities = 254/478 (53%), Positives = 334/478 (69%), Gaps = 9/478 (1%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M HLVW R DLR+ DN AL AAC NS A+V+A++IATP QW H +S RQ+ I A L Sbjct: 1 MITHLVWFRQDLRLHDNLALAAACRNSSARVLALYIATPRQWATHNMSPRQAELINAQLN 60 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 +Q +L++KGI + + +F S+E + C + VT LFYN QYE+NE RD +E+ Sbjct: 61 GLQIALAEKGIPLLFREVDDFVASVEIVKQVCAENSVTHLFYNYQYEVNERARDVEVERA 120 Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 L++ V+C+ FDDSV+LPPG+++ +MYKV+TPF+ A ++ L + + P +R +G Sbjct: 121 LRN-VVCEGFDDSVILPPGAVMTGNHEMYKVFTPFKNAWLKRLREGMPECVAAPKVRSSG 179 Query: 187 PVTPSNIPRF-FDYPFQAIDPM-FPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244 + PS P +YP Q+ D FP+ E+ A+ LR+FC+ Y +QRD PA++GTS+ Sbjct: 180 SIEPS--PSITLNYPRQSFDTAHFPVEEKAAIAQLRQFCQNGAGDYEQQRDFPAVEGTSR 237 Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFS-WLNELIWREFYRHLMAFYPSVCM 303 LS L+ G LSPRQC +RL E L GA S WL+ELIWREFYRHLM +YPS+C Sbjct: 238 LSASLATGGLSPRQCLHRLLAEQPQAL---DGGAGSVWLSELIWREFYRHLMTYYPSLCK 294 Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363 +PFI WT++++W + LQAW++G TG+PI+DAAMRQLN+ GWMHNRLRMITASFLVK Sbjct: 295 HRPFIAWTDRVQWQSNPAHLQAWQKGKTGYPIVDAAMRQLNSTGWMHNRLRMITASFLVK 354 Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423 DLL+DWR GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNP QG++FD +G Sbjct: 355 DLLIDWREGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPITQGEKFDREGE 414 Query: 424 FIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481 FIR WLPEL +VP + +H P W K + L+YP PIVDHK+A TL Y A+K + Sbjct: 415 FIRRWLPELRDVPGKAVHEPWKWAQKAGVKLDYPQPIVDHKEARLRTLAAYEEARKGA 472 >gi|16759651|ref|NP_455268.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp. enterica serovar Typhi str. CT18] gi|29142576|ref|NP_805918.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|213163180|ref|ZP_03348890.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp. enterica serovar Typhi str. E00-7866] gi|213865098|ref|ZP_03387217.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp. enterica serovar Typhi str. M223] gi|289826651|ref|ZP_06545657.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp. enterica serovar Typhi str. E98-3139] gi|25291449|pir||AI0587 deoxyribodipyrimidine photolyase [imported] - Salmonella enterica subsp. enterica serovar Typhi (strain CT18) gi|16501943|emb|CAD05171.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp. enterica serovar Typhi] gi|29138207|gb|AAO69778.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] Length = 473 Score = 525 bits (1353), Expect = e-147, Method: Compositional matrix adjust. Identities = 252/477 (52%), Positives = 334/477 (70%), Gaps = 6/477 (1%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M HLVW R DLR+ DN AL AAC ++ A+V+A++I+TP QW+ H ++ RQ+ FI A L Sbjct: 1 MPTHLVWFRRDLRLQDNLALAAACRDASARVLALYISTPAQWQAHDMAPRQAAFISAQLN 60 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 +Q +L++KGI +H+ ++F+ SIE + + C Q V+ LFYN QYE NE +RD +EK Sbjct: 61 ALQTALAEKGIPLLFHEVADFNASIETVKNVCRQHDVSHLFYNYQYEFNERQRDAAVEKT 120 Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 L VIC+ FDDSV+L PG+++ +MYKV+TPF+ A ++ L + +P P IR++G Sbjct: 121 LPS-VICEGFDDSVILAPGAVMTGNHEMYKVFTPFKNAWLKRLKEDIPPCVPAPKIRVSG 179 Query: 187 PVTPSNIPRFFDYPFQAIDP-MFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245 ++ P +YP QA D +FP+ E + LR FC + Y +RD PA+ GTS+L Sbjct: 180 ALSIPLTPVSLNYPQQAFDAALFPVEENAVIAQLRHFCSQGADEYASRRDFPAVDGTSRL 239 Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFS-WLNELIWREFYRHLMAFYPSVCMG 304 S L+ G LSPRQC +RL E L G S WLNELIWREFYRHLM +YP++C Sbjct: 240 SASLATGGLSPRQCLHRLLAEQPQAL---DGGPGSVWLNELIWREFYRHLMTWYPALCKH 296 Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364 +PFI WT+++ W ++ H QAW++G TG+PI+DAAMRQLN GWMHNRLRMITASFLVKD Sbjct: 297 QPFIRWTKRVAWQENPHYFQAWQKGETGYPIVDAAMRQLNATGWMHNRLRMITASFLVKD 356 Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424 LL+DWR+GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT Q +RFD G F Sbjct: 357 LLIDWRLGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQRERFDRDGEF 416 Query: 425 IRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481 IR WLP L ++P + IH P W +K + L+YP PIV+HK+A TL+ Y AA+K + Sbjct: 417 IRQWLPALRDIPGKAIHEPWRWAEKAGVVLDYPRPIVEHKQARIATLSAYEAARKGA 473 >gi|194439253|ref|ZP_03071333.1| deoxyribodipyrimidine photolyase [Escherichia coli 101-1] gi|253774322|ref|YP_003037153.1| deoxyribodipyrimidine photolyase [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|254160778|ref|YP_003043886.1| deoxyribodipyrimidine photolyase [Escherichia coli B str. REL606] gi|300929490|ref|ZP_07144958.1| FAD binding domain of DNA photolyase [Escherichia coli MS 187-1] gi|194421838|gb|EDX37845.1| deoxyribodipyrimidine photolyase [Escherichia coli 101-1] gi|253325366|gb|ACT29968.1| Deoxyribodipyrimidine photo-lyase [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|253972679|gb|ACT38350.1| deoxyribodipyrimidine photolyase, FAD-binding [Escherichia coli B str. REL606] gi|253976873|gb|ACT42543.1| deoxyribodipyrimidine photolyase, FAD-binding [Escherichia coli BL21(DE3)] gi|300462599|gb|EFK26092.1| FAD binding domain of DNA photolyase [Escherichia coli MS 187-1] gi|313848579|emb|CAQ31174.2| deoxyribodipyrimidine photolyase (photoreactivation) [Escherichia coli BL21(DE3)] gi|323963088|gb|EGB58658.1| DNA photolyase [Escherichia coli H489] Length = 473 Score = 525 bits (1353), Expect = e-147, Method: Compositional matrix adjust. Identities = 254/478 (53%), Positives = 334/478 (69%), Gaps = 9/478 (1%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M HLVW R DLR+ DN AL AAC NS A+V+A++IATP QW H +S RQ+ I A L Sbjct: 1 MITHLVWFRQDLRLHDNLALAAACRNSSARVLALYIATPRQWATHNMSPRQAELINAQLN 60 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 +Q +L++KGI + + +F S+E + C + VT LFYN QYE+NE RD +E+ Sbjct: 61 GLQIALAEKGIPLLFREVDDFVASVEIVKQVCAENSVTHLFYNYQYEVNERARDVEVERA 120 Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 L++ V+C+ FDDSV+LPPG+++ +MYKV+TPF+ A ++ L + + P +R +G Sbjct: 121 LRN-VVCEGFDDSVILPPGAVMTGNHEMYKVFTPFKNAWLKRLREGMPECVAAPKVRSSG 179 Query: 187 PVTPSNIPRF-FDYPFQAIDPM-FPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244 + P+ P +YP Q+ D FP+ E+ A+ LR+FC+ Y +QRD PA++GTS+ Sbjct: 180 SIEPA--PSITLNYPRQSFDTAHFPVEEKAAIAQLRQFCQNGAGEYEQQRDFPAVEGTSR 237 Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFS-WLNELIWREFYRHLMAFYPSVCM 303 LS L+ G LSPRQC +RL E L GA S WL+ELIWREFYRHLM +YPS+C Sbjct: 238 LSASLATGGLSPRQCLHRLLAEQPQAL---DGGAGSVWLSELIWREFYRHLMTYYPSLCK 294 Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363 PFI WT++++W + LQAW++G TG+PI+DAAMRQLN+ GWMHNRLRMITASFLVK Sbjct: 295 HCPFIAWTDRVQWQSNPAHLQAWQEGKTGYPIVDAAMRQLNSTGWMHNRLRMITASFLVK 354 Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423 DLL+DWR GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG++FD +G Sbjct: 355 DLLIDWREGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGEKFDREGE 414 Query: 424 FIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481 FIR WLPEL +VP + +H P W K + L+YP PIVDHK+A TL Y A+K + Sbjct: 415 FIRRWLPELRDVPGKAVHEPWKWAQKAGVMLDYPQPIVDHKEARLRTLAAYEEARKGA 472 >gi|320179459|gb|EFW54416.1| Deoxyribodipyrimidine photolyase [Shigella boydii ATCC 9905] Length = 472 Score = 525 bits (1352), Expect = e-147, Method: Compositional matrix adjust. Identities = 252/476 (52%), Positives = 335/476 (70%), Gaps = 9/476 (1%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M+ HL W R DLR+ DN AL AAC NS A+V+A++IATP QW H +S RQ+ I A L Sbjct: 1 MTTHLAWFRQDLRLHDNLALAAACRNSSARVLALYIATPRQWETHNMSPRQAELINAQLN 60 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 +Q +L++KGI + + +F S+E + C + VT LFYN QYE+NE RD +E+ Sbjct: 61 GLQIALAEKGIPLLFREVDDFVASVEIVKQVCAENSVTHLFYNYQYEVNERARDVDVERA 120 Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 L++ V+C+ FDDSV+LPPG+++ +M+KV+TPF+ A ++ L + + VP +R +G Sbjct: 121 LRN-VVCEGFDDSVILPPGAVMTGNHEMHKVFTPFKNAWLKRLREGMPECVAVPKVRSSG 179 Query: 187 PVTPSNIPRF-FDYPFQAIDPM-FPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244 + P+ P +YP Q+ D FP+ E+ A+ LR+FC+ Y +QRD PA++GTS+ Sbjct: 180 SIKPA--PSITLNYPRQSFDTAHFPVEEKAAIAQLRQFCENGAGEYEQQRDFPAVEGTSR 237 Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFS-WLNELIWREFYRHLMAFYPSVCM 303 LS L+ G LSPRQC +RL E L GA S WL+ELIWREFYRHLM +YPS+C Sbjct: 238 LSASLATGGLSPRQCLHRLLAEQPQAL---DGGAGSVWLSELIWREFYRHLMTYYPSLCK 294 Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363 +PFI WT++++W + LQAW++G TG+PI+DAAMRQLN+ GWMHNRLRMITASFLVK Sbjct: 295 HRPFIAWTDRVQWQSNPAHLQAWQKGKTGYPIVDAAMRQLNSTGWMHNRLRMITASFLVK 354 Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423 DLL+DWR GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNP QG++FD +G Sbjct: 355 DLLIDWREGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPITQGEKFDREGE 414 Query: 424 FIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479 FIR WLPEL +VP + +H P W K + L+YP PIV+HK+A TL Y AA+K Sbjct: 415 FIRRWLPELRDVPGKAVHEPWKWAQKAGVKLDYPQPIVEHKEARVQTLAAYEAARK 470 >gi|170020947|ref|YP_001725901.1| deoxyribodipyrimidine photolyase [Escherichia coli ATCC 8739] gi|169755875|gb|ACA78574.1| Deoxyribodipyrimidine photo-lyase [Escherichia coli ATCC 8739] Length = 472 Score = 525 bits (1352), Expect = e-147, Method: Compositional matrix adjust. Identities = 254/478 (53%), Positives = 334/478 (69%), Gaps = 9/478 (1%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M HLVW R DLR+ DN AL AAC NS A+V+A++IATP QW H +S RQ+ I A L Sbjct: 1 MITHLVWFRQDLRLHDNLALAAACRNSSARVLALYIATPRQWATHNMSPRQAELINAQLN 60 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 +Q +L++KGI + + +F S+E + C + VT LFYN QYE+NE RD +E+ Sbjct: 61 GLQIALAEKGIPLLFREVDDFVASVEIVKQVCAENSVTHLFYNYQYEVNERARDVEVERA 120 Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 L++ V+C+ FDDSV+LPPG+++ +MYKV+TPF+ A ++ L + + P +R +G Sbjct: 121 LRN-VVCEGFDDSVILPPGAVMTGNHEMYKVFTPFKNAWLKRLREGMPECVAAPKVRSSG 179 Query: 187 PVTPSNIPRF-FDYPFQAIDPM-FPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244 + P+ P +YP Q+ D FP+ E+ A+ LR+FC+ Y +QRD PA++GTS+ Sbjct: 180 SIEPA--PSITLNYPRQSFDTAHFPVEEKAAIAQLRQFCQNGAGEYEQQRDFPAVEGTSR 237 Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFS-WLNELIWREFYRHLMAFYPSVCM 303 LS L+ G LSPRQC +RL E L GA S WL+ELIWREFYRHLM +YPS+C Sbjct: 238 LSASLATGGLSPRQCLHRLLAEQPQAL---DGGAGSVWLSELIWREFYRHLMTYYPSLCK 294 Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363 PFI WT++++W + LQAW++G TG+PI+DAAMRQLN+ GWMHNRLRMITASFLVK Sbjct: 295 HCPFIAWTDRVQWQSNPAHLQAWQEGKTGYPIVDAAMRQLNSTGWMHNRLRMITASFLVK 354 Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423 DLL+DWR GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG++FD +G Sbjct: 355 DLLIDWREGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGEKFDREGE 414 Query: 424 FIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481 FIR WLPEL +VP + +H P W K + L+YP PIVDHK+A TL Y A+K + Sbjct: 415 FIRRWLPELRDVPGKAVHEPWKWAQKAGVMLDYPQPIVDHKEARLRTLAAYEEARKGA 472 >gi|300816355|ref|ZP_07096577.1| FAD binding domain of DNA photolyase [Escherichia coli MS 107-1] gi|300531045|gb|EFK52107.1| FAD binding domain of DNA photolyase [Escherichia coli MS 107-1] Length = 472 Score = 525 bits (1352), Expect = e-147, Method: Compositional matrix adjust. Identities = 253/478 (52%), Positives = 334/478 (69%), Gaps = 9/478 (1%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M HLVW R DLR+ DN AL AAC NS A+V+A++IATP QW H +S RQ+ I A L Sbjct: 1 MITHLVWFRQDLRLHDNLALAAACRNSSARVLALYIATPRQWATHNMSPRQAELINAQLN 60 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 +Q +L++KGI + + +F S+E + C + VT LFYN QYE+NE RD +E+ Sbjct: 61 GLQIALAEKGIPLLFREVDDFVASVEIVKQVCAENSVTHLFYNYQYEVNERARDVEVERA 120 Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 L++ V+C+ FDDSV+LPPG+++ +MYKV+TPF+ A ++ L + + P +R +G Sbjct: 121 LRN-VVCEGFDDSVILPPGAVMTGNHEMYKVFTPFKNAWLKRLREGMPECVAAPKVRSSG 179 Query: 187 PVTPSNIPRF-FDYPFQAIDPM-FPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244 + P+ P +YP Q+ D FP+ E+ A+ LR+FC+ Y +QRD PA++GTS+ Sbjct: 180 SIEPA--PSITLNYPRQSFDTAHFPVEEKAAIAQLRQFCQNGAGEYEQQRDFPAVEGTSR 237 Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFS-WLNELIWREFYRHLMAFYPSVCM 303 LS L+ G LSPRQC +RL E L GA S WL+ELIWREFYRHLM +YPS+C Sbjct: 238 LSASLATGGLSPRQCLHRLLAEQPQAL---DGGAGSVWLSELIWREFYRHLMTYYPSLCK 294 Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363 +PFI WT++++W + LQAW++G TG+PI+DAAMRQLN+ GWMHNRLRMITASFLVK Sbjct: 295 HRPFIAWTDRVQWQSNPAHLQAWQKGKTGYPIVDAAMRQLNSTGWMHNRLRMITASFLVK 354 Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423 DLL+DWR GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNP QG++FD +G Sbjct: 355 DLLIDWREGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPITQGEKFDREGE 414 Query: 424 FIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481 FIR WLPEL +VP + +H P W K + L+YP PIVDHK+A TL Y A+K + Sbjct: 415 FIRRWLPELRDVPGKAVHEPWKWAQKAGVKLDYPQPIVDHKEARLRTLAAYEEARKGA 472 >gi|24112014|ref|NP_706524.1| deoxyribodipyrimidine photolyase [Shigella flexneri 2a str. 301] gi|30062127|ref|NP_836298.1| deoxyribodipyrimidine photolyase [Shigella flexneri 2a str. 2457T] gi|24050832|gb|AAN42231.1| deoxyribodipyrimidine photolyase (photoreactivation) [Shigella flexneri 2a str. 301] gi|30040372|gb|AAP16104.1| deoxyribodipyrimidine photolyase (photoreactivation) [Shigella flexneri 2a str. 2457T] gi|281599976|gb|ADA72960.1| Deoxyribodipyrimidine photolyase [Shigella flexneri 2002017] gi|313649656|gb|EFS14080.1| deoxyribodipyrimidine photo-lyase [Shigella flexneri 2a str. 2457T] gi|332761188|gb|EGJ91474.1| deoxyribodipyrimidine photo-lyase [Shigella flexneri 2747-71] gi|332763978|gb|EGJ94216.1| deoxyribodipyrimidine photo-lyase [Shigella flexneri K-671] gi|332768197|gb|EGJ98382.1| deoxyribodipyrimidine photolyase [Shigella flexneri 2930-71] gi|333021492|gb|EGK40742.1| deoxyribodipyrimidine photo-lyase [Shigella flexneri K-304] Length = 472 Score = 525 bits (1352), Expect = e-147, Method: Compositional matrix adjust. Identities = 252/476 (52%), Positives = 334/476 (70%), Gaps = 9/476 (1%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M+ HL W R DLR+ DN AL AAC NS A+V+A++IATP +W H +S RQ+ I A L Sbjct: 1 MTTHLAWFRQDLRLHDNLALAAACRNSSARVLALYIATPRKWETHNMSPRQAELINAQLN 60 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 +Q +L++KGI + + +F S+E + C + VT LFYN QYE+NE RD +E+ Sbjct: 61 GLQIALAEKGIPLLFREVDDFVASVEIVKQVCAENSVTHLFYNYQYEVNERARDVDVERA 120 Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 L++ V+C+ FDDSV+LPPG+++ +MYKV+TPF+ A ++ L + + P +R +G Sbjct: 121 LRN-VVCEGFDDSVILPPGAVMTGNHEMYKVFTPFKNAWLKRLREGMPECVAAPKVRSSG 179 Query: 187 PVTPSNIPRF-FDYPFQAIDPM-FPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244 + P+ P +YP Q+ D FP+ E+ A+ LR+FC+ Y +QRD PA++GTS+ Sbjct: 180 SIKPA--PSITLNYPRQSFDTAHFPVEEKAAIAQLRQFCENGAGEYEQQRDFPAVEGTSR 237 Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFS-WLNELIWREFYRHLMAFYPSVCM 303 LS L+ G LSPRQC +RL E L GA S WL+ELIWREFYRHLM +YPS+C Sbjct: 238 LSASLATGGLSPRQCLHRLLAEQPQAL---DGGAGSVWLSELIWREFYRHLMTYYPSLCK 294 Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363 +PFI WT++++W + LQAW++G TG+PIIDAAMRQLN+ GWMHNRLRMITASFLVK Sbjct: 295 HRPFIAWTDRVQWQSNPAHLQAWQKGKTGYPIIDAAMRQLNSTGWMHNRLRMITASFLVK 354 Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423 DLL+DWR GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNP QG++FD +G Sbjct: 355 DLLIDWREGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPITQGEKFDREGE 414 Query: 424 FIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479 FIR WLPEL +VP + +H P W K + L+YP PIV+HK+A TL Y AA+K Sbjct: 415 FIRRWLPELRDVPGKAVHEPWKWAQKAGVKLDYPQPIVEHKEARVQTLAAYEAARK 470 >gi|333007384|gb|EGK26864.1| deoxyribodipyrimidine photo-lyase [Shigella flexneri VA-6] Length = 472 Score = 525 bits (1352), Expect = e-147, Method: Compositional matrix adjust. Identities = 252/476 (52%), Positives = 333/476 (69%), Gaps = 9/476 (1%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M+ HL W R DLR+ DN AL AAC NS A+V+A++IATP QW H +S RQ+ I A L Sbjct: 1 MTTHLAWFRQDLRLHDNLALAAACRNSSARVLALYIATPRQWETHNMSPRQAELINAQLN 60 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 +Q +L++KGI + + +F S+E + C + VT LFYN QYE+NE RD +E+ Sbjct: 61 GLQIALAEKGIPLLFREVDDFVASVEIVKQVCAENSVTHLFYNYQYEVNERARDVDVERA 120 Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 L++ V+C+ FDDSV+LPPG+++ +MYKV+TPF+ A ++ L + + P +R +G Sbjct: 121 LRN-VVCEGFDDSVILPPGAVMTGNHEMYKVFTPFKNAWLKRLREGMPECVAAPKVRSSG 179 Query: 187 PVTPSNIPRF-FDYPFQAIDPM-FPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244 + P+ P +YP Q+ D FP+ E+ A+ LR+FC+ Y +QRD PA++GTS+ Sbjct: 180 SIKPA--PSITLNYPRQSFDTAHFPVEEKAAIAQLRQFCENGAGEYEQQRDFPAVEGTSR 237 Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFS-WLNELIWREFYRHLMAFYPSVCM 303 LS L+ G LSPRQC +RL E L GA S WL+ELIWREFYRHLM +YPS+C Sbjct: 238 LSASLATGGLSPRQCLHRLLAEQPQAL---DGGAGSVWLSELIWREFYRHLMTYYPSLCK 294 Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363 +PFI WT++++W + LQAW++G TG+PIIDAAMRQLN+ GWMHNRLRMITASFLVK Sbjct: 295 HRPFIAWTDRVQWQSNPAHLQAWQKGKTGYPIIDAAMRQLNSTGWMHNRLRMITASFLVK 354 Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423 DLL+DWR GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNP QG++FD +G Sbjct: 355 DLLIDWREGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPITQGEKFDREGE 414 Query: 424 FIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479 FIR WLPEL +VP + +H P W K + L+YP PIV+HK+A TL Y A+K Sbjct: 415 FIRRWLPELRDVPGKAVHEPWKWAQKAGVKLDYPQPIVEHKEARVQTLAAYETARK 470 >gi|56414171|ref|YP_151246.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|197363094|ref|YP_002142731.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|56128428|gb|AAV77934.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|197094571|emb|CAR60092.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] Length = 473 Score = 525 bits (1351), Expect = e-147, Method: Compositional matrix adjust. Identities = 252/477 (52%), Positives = 334/477 (70%), Gaps = 6/477 (1%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M HLVW R DLR+ DN AL AAC ++ A+V+A++I+TP QW+ H ++ RQ+ FI A L Sbjct: 1 MPTHLVWFRRDLRLQDNLALAAACRDASARVLALYISTPAQWQAHDMAPRQAAFISAQLN 60 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 +Q +L++KGI +H+ ++F+ SIE + + C Q V+ LFYN QYE NE +RD +EK Sbjct: 61 ALQTALAEKGIPLLFHEVADFNASIETVKNVCRQHDVSHLFYNYQYEFNERQRDAAVEKT 120 Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 L VIC+ FDDSV+L PG+++ +MYKV+TPF+ A ++ L + +P P IR++G Sbjct: 121 LPS-VICEGFDDSVILAPGAVMTGNHEMYKVFTPFKNAWLKRLKEDIPPCVPAPKIRVSG 179 Query: 187 PVTPSNIPRFFDYPFQAIDP-MFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245 ++ P +YP QA D +FP+ E + LR FC + Y +RD PA+ GTS+L Sbjct: 180 ALSIPLTPVSLNYPQQAFDAALFPVEENAVIAQLRHFCSQGADEYASRRDFPAVDGTSRL 239 Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFS-WLNELIWREFYRHLMAFYPSVCMG 304 S L+ G LSPRQC +RL E L G S WLNELIWREFYRHLM +YP++C Sbjct: 240 SASLATGGLSPRQCLHRLLAEQPQAL---DGGPGSVWLNELIWREFYRHLMTWYPALCKH 296 Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364 +PFI WT+++ W ++ H QAW++G TG+PI+DAAMRQLN GWMHNRLRMITASFLVKD Sbjct: 297 QPFIRWTKRVAWQENPHYFQAWQKGETGYPIVDAAMRQLNATGWMHNRLRMITASFLVKD 356 Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424 LL+DW +GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG+RFD G F Sbjct: 357 LLIDWWLGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGERFDRDGEF 416 Query: 425 IRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481 IR WLP L ++P + IH P W +K + L+YP PIV+HK+A TL+ Y AA+K + Sbjct: 417 IRQWLPALRDIPGKAIHEPWRWAEKAGVVLDYPRPIVEHKQARIATLSAYEAARKGA 473 >gi|82775975|ref|YP_402322.1| deoxyribodipyrimidine photolyase [Shigella dysenteriae Sd197] gi|309786366|ref|ZP_07680992.1| deoxyribodipyrimidine photo-lyase [Shigella dysenteriae 1617] gi|81240123|gb|ABB60833.1| deoxyribodipyrimidine photolyase [Shigella dysenteriae Sd197] gi|308925760|gb|EFP71241.1| deoxyribodipyrimidine photo-lyase [Shigella dysenteriae 1617] Length = 472 Score = 525 bits (1351), Expect = e-146, Method: Compositional matrix adjust. Identities = 253/476 (53%), Positives = 334/476 (70%), Gaps = 9/476 (1%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M+ HLVW R DLR+ DN AL AAC NS A+V+A++IATP QW H +S RQ+ I A L Sbjct: 1 MTTHLVWFRQDLRLHDNLALAAACRNSSARVLALYIATPRQWAAHNMSPRQAELINAQLN 60 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 +Q +L++KGI + + +F S+E + C + VT LFYN QYE+NE RD +E+ Sbjct: 61 GLQIALAEKGIPLLFREVDDFAASVEIIKQVCAENSVTHLFYNYQYEVNERARDVEVERA 120 Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 L++ V+C+ FDDSV+LPPG+++ +MYKV+TPF+ A ++ L + + P +R +G Sbjct: 121 LRN-VVCEGFDDSVILPPGAVMTGNHEMYKVFTPFQNAWLKRLREGMPECVAAPKVRSSG 179 Query: 187 PVTPSNIPRF-FDYPFQAIDPM-FPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244 + P+ P +YP Q+ D F + E+ A+ LR+FC+ Y +QRD PA +GTS+ Sbjct: 180 SIKPA--PSITLNYPRQSFDTAHFLVEEKAAIAQLRQFCQNGAGEYEQQRDFPAAEGTSR 237 Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFS-WLNELIWREFYRHLMAFYPSVCM 303 LS L+ G LSPRQC +RL E L GA S WL+ELIWREFYRHLM +YPS+C Sbjct: 238 LSASLATGGLSPRQCLHRLLAEQPQAL---DGGAGSVWLSELIWREFYRHLMTYYPSLCK 294 Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363 PFI WT++++W + LQAW++G TG+PI+DAAMRQLN+ GWMHNRLRMITASFLVK Sbjct: 295 HCPFIAWTDRVQWQSNPAHLQAWQEGKTGYPIVDAAMRQLNSTGWMHNRLRMITASFLVK 354 Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423 DLL+DWR GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG++FD +G Sbjct: 355 DLLIDWREGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGEKFDREGE 414 Query: 424 FIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479 FIR WLPEL +VP + +H P W +K + L+YP PIV+HK+A TL Y AA+K Sbjct: 415 FIRQWLPELRDVPGKVVHEPWKWAEKAGVKLDYPQPIVEHKEARVQTLAAYEAARK 470 >gi|260853943|ref|YP_003227834.1| deoxyribodipyrimidine photolyase, FAD-binding [Escherichia coli O26:H11 str. 11368] gi|257752592|dbj|BAI24094.1| deoxyribodipyrimidine photolyase, FAD-binding [Escherichia coli O26:H11 str. 11368] gi|323153779|gb|EFZ40026.1| deoxyribodipyrimidine photo-lyase [Escherichia coli EPECa14] Length = 472 Score = 524 bits (1350), Expect = e-146, Method: Compositional matrix adjust. Identities = 254/476 (53%), Positives = 333/476 (69%), Gaps = 9/476 (1%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M+ HLVW R DLR+ DN AL AAC NS A+V+A++IATP QW H +S RQ+ I A L Sbjct: 1 MTTHLVWFRQDLRLHDNLALAAACRNSSARVLALYIATPRQWATHNMSPRQAELINAQLN 60 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 +Q +L++KGI + + +F S+E + C + VT LFYN QYE+NE RD +E+ Sbjct: 61 GLQIALAEKGIPLLFREVDDFVASVEIVKQVCAENSVTHLFYNYQYEVNERARDVEVERA 120 Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 L++ V+C+ FDDSV+LPPG++ +MYKV+TPF+ A ++ L + + P +R +G Sbjct: 121 LRN-VVCEGFDDSVILPPGAVKTGNHEMYKVFTPFKNAWLKRLREGMPECVAAPKVRSSG 179 Query: 187 PVTPSNIPRF-FDYPFQAIDPM-FPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244 + PS P +YP Q+ D FP+ E+ A+ LR+FC+ Y +QRD PA++GTS+ Sbjct: 180 SIEPS--PSITLNYPRQSFDTAHFPVEEKAAIAQLRQFCQNGAGEYEQQRDFPAVEGTSR 237 Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFS-WLNELIWREFYRHLMAFYPSVCM 303 LS L+ G LSPRQC +RL E L GA S WL+ELIWREFYRHLM +YPS+C Sbjct: 238 LSASLATGGLSPRQCLHRLLAEQPQAL---DGGAGSVWLSELIWREFYRHLMTYYPSLCK 294 Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363 PFI WT++++W + LQAW++G TG+PI+DAAMRQLN+ GWMHNRLRMI+ASFLVK Sbjct: 295 HCPFIAWTDRVQWQSNPAHLQAWQEGKTGYPIVDAAMRQLNSTGWMHNRLRMISASFLVK 354 Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423 DLL+DWR GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG++FD +G Sbjct: 355 DLLIDWREGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGEKFDREGE 414 Query: 424 FIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479 FIR WLPEL +VP + +H P W K + L+YP PIVDHK+A TL Y A+K Sbjct: 415 FIRRWLPELRDVPGKAVHEPWKWAQKAGVMLDYPQPIVDHKEARLRTLAAYEEARK 470 >gi|307315377|ref|ZP_07594947.1| Deoxyribodipyrimidine photo-lyase [Escherichia coli W] gi|306905271|gb|EFN35815.1| Deoxyribodipyrimidine photo-lyase [Escherichia coli W] gi|315059950|gb|ADT74277.1| deoxyribodipyrimidine photolyase, FAD-binding protein [Escherichia coli W] gi|323379489|gb|ADX51757.1| Deoxyribodipyrimidine photo-lyase [Escherichia coli KO11] Length = 472 Score = 524 bits (1349), Expect = e-146, Method: Compositional matrix adjust. Identities = 253/478 (52%), Positives = 334/478 (69%), Gaps = 9/478 (1%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M HLVW R DLR+ DN AL AAC NS A+V+A++IATP QW H +S RQ+ I A L Sbjct: 1 MITHLVWFRQDLRLHDNLALAAACRNSSARVLALYIATPRQWATHNMSPRQAELINAQLN 60 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 +Q +L++KGI + + +F S+E + C + VT LFYN QYE+NE RD +E+ Sbjct: 61 GLQIALAEKGIPLLFREVDDFVASVEIVKQVCAENSVTHLFYNYQYEVNERARDVEVERA 120 Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 L++ V+C+ FDDSV+LPPG+++ +MYKV+TPF+ A ++ L + + P +R +G Sbjct: 121 LRN-VVCEGFDDSVILPPGAVMTGNHEMYKVFTPFKNAWLKRLREGMPECVAAPKVRSSG 179 Query: 187 PVTPSNIPRF-FDYPFQAIDPM-FPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244 + P+ P +YP Q+ D FP+ E+ A+ LR+FC+ Y +QRD PA++GTS+ Sbjct: 180 SIEPA--PSITLNYPRQSFDTAHFPVEEKAAIAQLRQFCQNGAGEYEQQRDFPAVEGTSR 237 Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFS-WLNELIWREFYRHLMAFYPSVCM 303 LS L+ G LSPRQC +RL E L GA S WL+ELIWREFYRHLM +YPS+C Sbjct: 238 LSASLATGGLSPRQCLHRLLAEQPQAL---DGGAGSVWLSELIWREFYRHLMTYYPSLCK 294 Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363 PFI WT++++W + LQAW++G TG+PI+DAAMRQLN+ GWMHNRLRMI+ASFLVK Sbjct: 295 HCPFIAWTDRVQWQSNPAHLQAWQEGKTGYPIVDAAMRQLNSTGWMHNRLRMISASFLVK 354 Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423 DLL+DWR GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG++FD +G Sbjct: 355 DLLIDWREGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGEKFDREGE 414 Query: 424 FIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481 FIR WLPEL +VP + +H P W K + L+YP PIVDHK+A TL Y A+K + Sbjct: 415 FIRRWLPELRDVPGKAVHEPWKWAQKAGVMLDYPQPIVDHKEARLRTLAAYEEARKGA 472 >gi|157154932|ref|YP_001461868.1| deoxyribodipyrimidine photolyase [Escherichia coli E24377A] gi|218553235|ref|YP_002386148.1| deoxyribodipyrimidine photolyase [Escherichia coli IAI1] gi|218694131|ref|YP_002401798.1| deoxyribodipyrimidine photolyase [Escherichia coli 55989] gi|256021218|ref|ZP_05435083.1| deoxyribodipyrimidine photolyase [Shigella sp. D9] gi|300926110|ref|ZP_07141923.1| FAD binding domain of DNA photolyase [Escherichia coli MS 182-1] gi|301327896|ref|ZP_07221069.1| FAD binding domain of DNA photolyase [Escherichia coli MS 78-1] gi|332282445|ref|ZP_08394858.1| deoxyribodipyrimidine photolyase [Shigella sp. D9] gi|157076962|gb|ABV16670.1| deoxyribodipyrimidine photolyase [Escherichia coli E24377A] gi|218350863|emb|CAU96561.1| deoxyribodipyrimidine photolyase, FAD-binding [Escherichia coli 55989] gi|218360003|emb|CAQ97550.1| deoxyribodipyrimidine photolyase, FAD-binding [Escherichia coli IAI1] gi|300417809|gb|EFK01120.1| FAD binding domain of DNA photolyase [Escherichia coli MS 182-1] gi|300845580|gb|EFK73340.1| FAD binding domain of DNA photolyase [Escherichia coli MS 78-1] gi|323185134|gb|EFZ70500.1| deoxyribodipyrimidine photo-lyase [Escherichia coli 1357] gi|332104797|gb|EGJ08143.1| deoxyribodipyrimidine photolyase [Shigella sp. D9] Length = 472 Score = 523 bits (1347), Expect = e-146, Method: Compositional matrix adjust. Identities = 253/478 (52%), Positives = 333/478 (69%), Gaps = 9/478 (1%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M HLVW R DLR+ DN AL AAC NS A+V+A++IATP QW H +S RQ+ I A L Sbjct: 1 MITHLVWFRQDLRLHDNLALAAACRNSSARVLALYIATPRQWATHNMSPRQAELINAQLN 60 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 +Q +L++KGI + + +F S+E + C + VT LFYN QYE+NE RD +E+ Sbjct: 61 GLQIALAEKGIPLLFREVDDFVASVEIVKQVCAENSVTHLFYNYQYEVNERARDVEVERA 120 Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 L++ V+C+ FDDSV+LPPG+++ +MYKV+TPF+ A ++ L + + P +R +G Sbjct: 121 LRN-VVCEGFDDSVILPPGAVMTGNHEMYKVFTPFKNAWLKRLREGMPECVAAPKVRSSG 179 Query: 187 PVTPSNIPRF-FDYPFQAIDPM-FPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244 + P+ P +YP Q+ D FP+ E+ A+ LR+FC+ Y +QRD PA++GTS+ Sbjct: 180 SIEPA--PSITLNYPRQSFDTAHFPVEEKAAIAQLRQFCQNGAGEYEQQRDFPAVEGTSR 237 Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFS-WLNELIWREFYRHLMAFYPSVCM 303 LS L+ G LSPRQC +RL E L GA S WL+ELIWREFYRHLM +YPS+C Sbjct: 238 LSASLATGGLSPRQCLHRLLAEQPQAL---DGGAGSVWLSELIWREFYRHLMTYYPSLCK 294 Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363 PFI WT++++W + LQAW++G TG+PI+DAAMRQLN+ GWMHNRLRMITASFLVK Sbjct: 295 HCPFIAWTDRVQWQSNPAHLQAWQKGKTGYPIVDAAMRQLNSTGWMHNRLRMITASFLVK 354 Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423 DLL+DWR GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNP QG++FD +G Sbjct: 355 DLLIDWREGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPITQGEKFDREGE 414 Query: 424 FIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481 FIR WLPEL +VP + +H P W K + L+YP PIVDHK+A TL Y A+K + Sbjct: 415 FIRRWLPELRDVPGKAVHEPWKWAQKAGVKLDYPQPIVDHKEARLRTLAAYEEARKGA 472 >gi|312970785|ref|ZP_07784964.1| deoxyribodipyrimidine photo-lyase [Escherichia coli 1827-70] gi|310336546|gb|EFQ01713.1| deoxyribodipyrimidine photo-lyase [Escherichia coli 1827-70] Length = 472 Score = 523 bits (1347), Expect = e-146, Method: Compositional matrix adjust. Identities = 253/478 (52%), Positives = 333/478 (69%), Gaps = 9/478 (1%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M HLVW R DLR+ DN AL AAC NS A+V+A++IATP QW H +S RQ+ I A L Sbjct: 1 MITHLVWFRQDLRLHDNLALAAACRNSSARVLALYIATPRQWATHNMSPRQAELINAQLN 60 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 +Q +L++KGI + + +F S+E + C + VT LFYN QYE+NE RD +E+ Sbjct: 61 GLQIALAEKGIPLLFREVDDFVASVEIVKQVCAENSVTHLFYNYQYEVNERARDVEVERA 120 Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 L++ V+C+ FD SV+LPPG+++ +MYKV+TPF+ A ++ L + + P +R +G Sbjct: 121 LRN-VVCEGFDGSVILPPGAVMTGNHEMYKVFTPFKNAWLKRLREGMPECVAAPKVRSSG 179 Query: 187 PVTPSNIPRF-FDYPFQAIDPM-FPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244 + P+ P +YP Q+ D FP+ E+ A+ LR+FC+ Y +QRD PA++GTS+ Sbjct: 180 SIEPA--PSITLNYPRQSFDTAHFPVEEKAAIAQLRQFCQNGAGEYEQQRDFPAVEGTSR 237 Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFS-WLNELIWREFYRHLMAFYPSVCM 303 LS L+ G LSPRQC +RL E L GA S WL+ELIWREFYRHLM +YPS+C Sbjct: 238 LSASLATGGLSPRQCLHRLLAEQPQAL---DGGAGSVWLSELIWREFYRHLMTYYPSLCK 294 Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363 PFI WT++++W + LQAW++G TG+PI+DAAMRQLN+ GWMHNRLRMITASFLVK Sbjct: 295 HCPFIAWTDRVQWQSNPAHLQAWQEGKTGYPIVDAAMRQLNSTGWMHNRLRMITASFLVK 354 Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423 DLL+DWR GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG++FD +G Sbjct: 355 DLLIDWREGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGEKFDREGE 414 Query: 424 FIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481 FIR WLPEL +VP + +H P W K + L+YP PIVDHK+A TL Y A+K + Sbjct: 415 FIRRWLPELRDVPGKAVHEPWKWAQKAGVMLDYPQPIVDHKEARLRTLAAYEEARKGA 472 >gi|146310870|ref|YP_001175944.1| deoxyribodipyrimidine photolyase [Enterobacter sp. 638] gi|145317746|gb|ABP59893.1| deoxyribodipyrimidine photo-lyase type I [Enterobacter sp. 638] Length = 470 Score = 523 bits (1347), Expect = e-146, Method: Compositional matrix adjust. Identities = 255/474 (53%), Positives = 325/474 (68%), Gaps = 6/474 (1%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M+ HLVW R DLR+ DN AL AAC + A+V+AVFIATP+QWRQH ++ RQ+ ++ A L Sbjct: 1 MTTHLVWFRADLRLHDNIALAAACRSQHARVLAVFIATPDQWRQHDMAPRQAAYLRAHLN 60 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 +Q+ L+++GI Y + S+F + C Q VT LFYN QYE NE +RD+ LEK Sbjct: 61 GLQQGLAERGIPLIYEEVSDFAAQSAKVQQLCQQHDVTHLFYNYQYEFNEQQRDRQLEKM 120 Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 L V+C+ FDDSV+LPPGS++ +MYKV+TPF+ A ++ L + + PA+R Sbjct: 121 LDG-VVCQGFDDSVMLPPGSVMTGNHEMYKVFTPFKNAYVKRLKEGLPECVAAPAVREQK 179 Query: 187 PVTPSNIPRFFDYPFQAIDP-MFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245 P + F+YP Q D +FP E+ A+ LR FC+ Y +RD P+I GTS+L Sbjct: 180 --LPPSAEIEFNYPQQDFDAELFPASEKAAIAQLRHFCQHGAGEYEARRDFPSIDGTSRL 237 Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305 S L++GVLSPRQC +RL E L + WLNELIWREFYRHLM ++P +C + Sbjct: 238 SACLALGVLSPRQCLHRLLAEQPRALDGGEGSV--WLNELIWREFYRHLMTYHPDLCKHR 295 Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365 PFI WT+ ++W D LLQAW+ G TG+PI+DAAMRQLN GWMHNRLRMI ASFLVKDL Sbjct: 296 PFIRWTDNVQWQHDDVLLQAWQDGKTGYPIVDAAMRQLNETGWMHNRLRMIVASFLVKDL 355 Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425 L+DWR GE YFM+QL+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG+RFD G FI Sbjct: 356 LIDWRAGERYFMAQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGQRFDATGEFI 415 Query: 426 RHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479 R WLP L VP + +H P W DK ++L+YP PIVDHK+A TL Y AA+K Sbjct: 416 RKWLPSLRGVPIKSLHEPWVWADKTGVTLDYPRPIVDHKQARVATLAAYEAARK 469 >gi|237730671|ref|ZP_04561152.1| deoxyribodipyrimidine photolyase [Citrobacter sp. 30_2] gi|226906210|gb|EEH92128.1| deoxyribodipyrimidine photolyase [Citrobacter sp. 30_2] Length = 472 Score = 523 bits (1346), Expect = e-146, Method: Compositional matrix adjust. Identities = 251/475 (52%), Positives = 332/475 (69%), Gaps = 6/475 (1%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M+ HLVW R DLR+ DN AL AAC + A V+A++I+TPEQW+ H ++ RQ+ + A L Sbjct: 1 MTTHLVWFRRDLRLHDNLALAAACRDRSAHVLALYISTPEQWKAHDMAPRQAALVNAQLN 60 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 +Q +L++KGI +H+ +F S+E + + C+Q V+++FYN QYEINE +RD +EK Sbjct: 61 ALQTALAEKGIPLLFHEVGDFATSVETVKNVCVQHGVSRMFYNYQYEINERQRDAAVEKS 120 Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 L +V+C+ FDDSV+LP G+++ +MYKV+TPF+ A ++ + + P +R +G Sbjct: 121 LP-QVVCEGFDDSVILPAGAVMTGNHEMYKVFTPFKNAWLKRIKDGIPECVSAPKVRESG 179 Query: 187 PVTPSNIPRFFDYPFQAIDPM-FPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245 + YP Q D FP E+ A+ LR FC++ Y + RD PAI GTS+L Sbjct: 180 ALDSPLTSITLSYPQQDFDSQQFPAEEKLAIAQLRHFCQQAAGEYEQLRDFPAIDGTSRL 239 Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFS-WLNELIWREFYRHLMAFYPSVCMG 304 S L+ G LSPRQC NRL E L + GA S WLNELIWREFYRHLM ++P++C Sbjct: 240 SASLATGGLSPRQCLNRLLVEQPQAL---EDGAGSVWLNELIWREFYRHLMTYHPALCRY 296 Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364 +PFI WT++++W + LQAWK G TG+PI+DAAMRQLN GWMHNRLRMITASFLVKD Sbjct: 297 QPFIRWTDRVQWQNNPTHLQAWKTGNTGYPIVDAAMRQLNATGWMHNRLRMITASFLVKD 356 Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424 LL+DWR GE+YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG++FD G F Sbjct: 357 LLIDWRKGEQYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGEKFDRDGEF 416 Query: 425 IRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479 IR W+PEL +VP + IH P SW +K ++L+YP PIVDHK+A TL Y AA+K Sbjct: 417 IRQWVPELRDVPGKAIHEPWSWAEKAQVTLSYPRPIVDHKQARLATLAAYEAARK 471 >gi|193065554|ref|ZP_03046622.1| deoxyribodipyrimidine photolyase [Escherichia coli E22] gi|194429065|ref|ZP_03061596.1| deoxyribodipyrimidine photolyase [Escherichia coli B171] gi|260842916|ref|YP_003220694.1| deoxyribodipyrimidine photolyase, FAD-binding [Escherichia coli O103:H2 str. 12009] gi|192926843|gb|EDV81469.1| deoxyribodipyrimidine photolyase [Escherichia coli E22] gi|194412896|gb|EDX29187.1| deoxyribodipyrimidine photolyase [Escherichia coli B171] gi|257758063|dbj|BAI29560.1| deoxyribodipyrimidine photolyase, FAD-binding [Escherichia coli O103:H2 str. 12009] gi|320198176|gb|EFW72780.1| Deoxyribodipyrimidine photolyase [Escherichia coli EC4100B] gi|323158756|gb|EFZ44769.1| deoxyribodipyrimidine photo-lyase [Escherichia coli E128010] Length = 472 Score = 522 bits (1345), Expect = e-146, Method: Compositional matrix adjust. Identities = 253/478 (52%), Positives = 333/478 (69%), Gaps = 9/478 (1%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M HLVW R DLR+ DN AL AAC NS A+V+A++IATP QW H +S RQ+ I A L Sbjct: 1 MITHLVWFRQDLRLHDNLALAAACRNSSARVLALYIATPRQWATHNMSPRQAELINAQLN 60 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 +Q +L++KGI + + +F S+E + C + VT LFYN QYE+NE RD +E+ Sbjct: 61 GLQIALAEKGIPLLFREVDDFVASVEIVKQVCAENSVTHLFYNYQYEVNERARDVEVERA 120 Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 L++ V+C+ FDDSV+LPPG+++ +MYKV+TPF+ A ++ L + + P +R +G Sbjct: 121 LRN-VVCEGFDDSVILPPGAVMTGNHEMYKVFTPFKNAWLKRLREGMPECVAAPKVRSSG 179 Query: 187 PVTPSNIPRF-FDYPFQAIDPM-FPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244 + P+ P +YP Q+ D FP+ E+ A+ LR+FC+ Y +QRD PA++GTS+ Sbjct: 180 SIEPA--PSITLNYPRQSFDTAHFPVEEKAAIAQLRQFCQNGAGEYEQQRDFPAVEGTSR 237 Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFS-WLNELIWREFYRHLMAFYPSVCM 303 LS L+ G LSPRQC +RL E L GA S WL+ELIWREFYRHLM +YPS+C Sbjct: 238 LSASLATGGLSPRQCLHRLLAEQPQAL---DGGAGSVWLSELIWREFYRHLMTYYPSLCK 294 Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363 PFI WT++++W + LQAW++G TG+PI+DAAMRQLN+ GWMHNRLRMITASFLVK Sbjct: 295 HCPFIAWTDRVQWQSNPAHLQAWQKGKTGYPIVDAAMRQLNSTGWMHNRLRMITASFLVK 354 Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423 DLL+DWR GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNP QG++FD +G Sbjct: 355 DLLIDWREGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPITQGEKFDREGE 414 Query: 424 FIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481 FIR WLPEL +VP + +H P W K + L+YP PIVDHK+A TL Y A+K + Sbjct: 415 FIRRWLPELRDVPGKAVHEPWKWAQKAGVMLDYPQPIVDHKEARLRTLAAYEEARKGA 472 >gi|283784466|ref|YP_003364331.1| deoxyribodipyrimidine photolyase [Citrobacter rodentium ICC168] gi|282947920|emb|CBG87482.1| deoxyribodipyrimidine photolyase [Citrobacter rodentium ICC168] Length = 472 Score = 522 bits (1344), Expect = e-146, Method: Compositional matrix adjust. Identities = 253/477 (53%), Positives = 327/477 (68%), Gaps = 7/477 (1%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 MS HLVW R DLR+ DN AL AAC +S A+V+A++I+TP QW +H +S RQ+ FI A L Sbjct: 1 MSTHLVWFRCDLRLHDNLALAAACRSSTARVLALYISTPAQWTKHTMSPRQAAFIAAQLE 60 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 +Q++L+ KGI + + ++FD S+E + + C VT LFYN QYE+NE RD +EK Sbjct: 61 ALQQALADKGIPLLFEETADFDASVETVKAVCESHDVTHLFYNYQYELNERERDAAVEKA 120 Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 L+ +VIC+ FDDSV+LPPGS++ +MYKV+TPF+ A ++ L + P R Sbjct: 121 LR-KVICEGFDDSVILPPGSVMTGNHEMYKVFTPFKNAWLKRLKEGMPECAAAPKARDRA 179 Query: 187 PVTPSNIPRFFDYPFQAID-PMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245 V P +YP Q D +FP+ E+ + LR+FC++ Y QRD PA GTS+L Sbjct: 180 AVAPQQ-KITLNYPQQQFDRTLFPVDEKAVIAQLRQFCQQGAGEYEHQRDFPATDGTSRL 238 Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFS-WLNELIWREFYRHLMAFYPSVCMG 304 S L+ G LSPRQC +RL E L GA S WLNELIWREFYRHLM P++C Sbjct: 239 SASLATGGLSPRQCLHRLLAEHPQAL---DGGAGSVWLNELIWREFYRHLMTRNPALCKH 295 Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364 +PFI WT+++ W ++ QAW++G TG+PI+DAAMRQLN GWMHNRLRMITASFLVKD Sbjct: 296 RPFIAWTDRVAWRDNAAHFQAWQEGKTGYPIVDAAMRQLNATGWMHNRLRMITASFLVKD 355 Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424 LL+DWR GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG++FD G F Sbjct: 356 LLIDWRKGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGEKFDRDGEF 415 Query: 425 IRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481 IR W+PEL VP + IH P W + ++L+YP P+VDHK+A TL Y AA+K + Sbjct: 416 IRRWIPELREVPGKAIHEPWKWANSVGVTLSYPQPVVDHKQARATTLAAYEAARKGA 472 >gi|329998823|ref|ZP_08303226.1| deoxyribodipyrimidine photo-lyase [Klebsiella sp. MS 92-3] gi|328538550|gb|EGF64657.1| deoxyribodipyrimidine photo-lyase [Klebsiella sp. MS 92-3] Length = 461 Score = 521 bits (1341), Expect = e-145, Method: Compositional matrix adjust. Identities = 253/465 (54%), Positives = 320/465 (68%), Gaps = 5/465 (1%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M+ HLVWLR DLRI DN AL AAC + A+V+A++IATP QWR+H ++ RQ+ FI + L Sbjct: 1 MATHLVWLRTDLRIHDNLALAAACRDPQAQVLALYIATPGQWREHHLAPRQAAFIASHLQ 60 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 + +L+++GI + +F S+E L +C Q +V+ LFYN QYE NE +RD +E Sbjct: 61 SLHAALAERGIPLWVEEADDFTASVERLADFCQQHQVSHLFYNYQYEFNERQRDAAVENT 120 Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 L+ VIC+ FDDSVLLPPGS+L +MYKV+TPF+ A I+ L + P R Sbjct: 121 LRD-VICQGFDDSVLLPPGSVLTGGGEMYKVFTPFKNAFIRRLRDGLPACVAAPKPRQAP 179 Query: 187 PVTPSNIPRFFDYPFQAIDPM-FPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245 +P +YP D + F E+ AL LR FC++ Y QRD PA++GTS+L Sbjct: 180 ARQAPPLPEL-NYPQTPFDGLLFAADEKTALARLRAFCQQAAADYEGQRDFPAVEGTSRL 238 Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305 SP L+IGVLSPRQC +RL E L +GA +WLNELIWREFYRHLM +YP +C G+ Sbjct: 239 SPCLAIGVLSPRQCLHRLLTEHPAAL-DGGAGA-TWLNELIWREFYRHLMVYYPKLCKGR 296 Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365 PF WT+K+ W + LQAW++G TGFPI+DAAMRQLN GWMHNRLRMI ASFL KDL Sbjct: 297 PFTAWTDKVAWRAEEASLQAWQRGETGFPIVDAAMRQLNATGWMHNRLRMIVASFLTKDL 356 Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425 +DWR GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG++FD QG FI Sbjct: 357 RLDWRAGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGEKFDKQGVFI 416 Query: 426 RHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHT 470 R WLPEL VP + +H P +W DK ++L+Y PIVDHK+A T Sbjct: 417 RRWLPELAKVPEKALHQPWAWADKQGITLDYSRPIVDHKQARQET 461 >gi|197287042|ref|YP_002152914.1| deoxyribodipyrimidine photolyase [Proteus mirabilis HI4320] gi|194684529|emb|CAR46324.1| deoxyribodipyrimidine photolyase [Proteus mirabilis HI4320] Length = 476 Score = 520 bits (1338), Expect = e-145, Method: Compositional matrix adjust. Identities = 253/473 (53%), Positives = 316/473 (66%), Gaps = 3/473 (0%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 VHLVW R+DLR+TDNKAL+ AC N+ A+V A+F TP QW+ H ++ Q FI+ +LL + Sbjct: 6 VHLVWFRHDLRVTDNKALFYACQNTQAQVHAIFTVTPAQWKAHHMALSQQAFIHDALLNL 65 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128 +L++ I + D+ + + YC Q +VT LF+N QY +NE RDK + + L Sbjct: 66 SHALAKLNIPLTLIISDTYADAAQSIVDYCQQHQVTALFFNHQYALNEQNRDKKVMELLA 125 Query: 129 HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL-TGP 187 H + D+V +PPG+++ +MYKV+TPFR A ++ + D SLP P IR Sbjct: 126 HNTTVYCYHDNVFVPPGNVVTQQGEMYKVFTPFRTAFLRLFLSQDNASLPAPEIRAHQKA 185 Query: 188 VTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSP 247 V+P + P F P + MFP EQ AL L++FC E+V +Y + RDIPAI GTSQLSP Sbjct: 186 VSPLSAP-LFALPISSTK-MFPASEQAALQRLKQFCYERVIHYAKWRDIPAIDGTSQLSP 243 Query: 248 YLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPF 307 YL+IG++S RQC+NRL + D L S F W NEL+WREFY+HL+ PS+ F Sbjct: 244 YLAIGLVSVRQCFNRLYQTEPDFLENNHSSTFVWFNELVWREFYQHLIVANPSLSKQIAF 303 Query: 308 IPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLV 367 PWTE I W D AW QG TGFPIIDAAMRQLN GWMHNRLRM+TASFLVKDLL+ Sbjct: 304 QPWTENIRWRNDQTEFTAWTQGLTGFPIIDAAMRQLNQTGWMHNRLRMLTASFLVKDLLI 363 Query: 368 DWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRH 427 DWR GE YFMSQL+DGD ASNNGGWQWAASTG D+VPYFRIFNPT QG++FDP G FIRH Sbjct: 364 DWRWGENYFMSQLIDGDFASNNGGWQWAASTGTDAVPYFRIFNPTTQGRKFDPDGEFIRH 423 Query: 428 WLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQ 480 WLPEL +VP +YIH P W K L+YP PIVDH KA + Y AKK+ Sbjct: 424 WLPELADVPDRYIHTPSEWAIKTGHYLDYPQPIVDHAKARVTAIASYEEAKKR 476 >gi|324116248|gb|EGC10169.1| DNA photolyase [Escherichia coli E1167] Length = 472 Score = 519 bits (1336), Expect = e-145, Method: Compositional matrix adjust. Identities = 252/478 (52%), Positives = 332/478 (69%), Gaps = 9/478 (1%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M HLVW R DLR+ DN AL AAC NS A+V+A++IATP QW H +S RQ+ I A L Sbjct: 1 MITHLVWFRQDLRLHDNLALAAACRNSSARVLALYIATPRQWATHNMSPRQAELINAQLN 60 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 +Q +L++KGI + + +F S+E + C + VT LFYN QYE+NE RD +E+ Sbjct: 61 GLQIALAEKGIPLLFREVDDFVASVEIVKQVCAENSVTHLFYNYQYEVNERARDVEVERA 120 Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 L++ V+C+ FDDSV+LPPG+++ +MYKV+TPF+ A ++ L + + P +R +G Sbjct: 121 LRN-VVCEGFDDSVILPPGAVMTGNHEMYKVFTPFKNAWLKRLREGMPECVAAPKVRSSG 179 Query: 187 PVTPSNIPRF-FDYPFQAIDPM-FPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244 + P+ P +YP Q+ D FP+ E+ A+ LR+FC+ Y +QRD PA++GTS+ Sbjct: 180 SIEPA--PSITLNYPRQSFDTAHFPVEEKAAIAQLRQFCQNGAGEYEQQRDFPAVEGTSR 237 Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFS-WLNELIWREFYRHLMAFYPSVCM 303 LS L+ G LSPRQC +RL E L GA S WL+ELIWREFYRHLM +YPS+C Sbjct: 238 LSASLATGGLSPRQCLHRLLAEQPQAL---DGGAGSVWLSELIWREFYRHLMTYYPSLCK 294 Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363 PFI WT++++W + LQAW++G TG+PI+DAAMRQLN+ GWMHNRLRMITASFLVK Sbjct: 295 HCPFIAWTDRVQWQSNPAHLQAWQKGKTGYPIVDAAMRQLNSTGWMHNRLRMITASFLVK 354 Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423 DLL+DWR GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNP QG++FD +G Sbjct: 355 DLLIDWREGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPITQGEKFDREGE 414 Query: 424 FIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481 FIR WLPEL +VP + +H P W K + L+YP IVDHK+A TL Y A+K + Sbjct: 415 FIRRWLPELRDVPGKAVHEPWKWAQKAGVKLDYPQLIVDHKEARLRTLAAYEEARKGA 472 >gi|227354710|ref|ZP_03839129.1| deoxyribodipyrimidine photolyase [Proteus mirabilis ATCC 29906] gi|227165220|gb|EEI50045.1| deoxyribodipyrimidine photolyase [Proteus mirabilis ATCC 29906] Length = 476 Score = 518 bits (1333), Expect = e-144, Method: Compositional matrix adjust. Identities = 253/473 (53%), Positives = 316/473 (66%), Gaps = 3/473 (0%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 VHLVW R+DLR+TDNKAL+ AC N+ A+V A+F TP QW+ H ++ Q FI+ +LL + Sbjct: 6 VHLVWFRHDLRVTDNKALFYACQNTQAQVHAIFTVTPAQWKAHHMALSQQAFIHDALLNL 65 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128 +L++ I + D+ + + YC Q +VT LF+N QY +NE RDK + + L Sbjct: 66 SHALAKLNIPLTLIISDTYADAAQSIVDYCQQHQVTALFFNHQYALNEQNRDKKVMELLA 125 Query: 129 HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL-TGP 187 H + D+V +PPG+++ +MYKV+TPFR A ++ + D SLP P IR Sbjct: 126 HNTTVYCYHDNVFVPPGNVVTQQGEMYKVFTPFRTAFLRLFLSQDNASLPAPEIRAHQKT 185 Query: 188 VTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSP 247 V+P + P F P + MFP EQ AL L++FC E+V +Y + RDIPAI GTSQLSP Sbjct: 186 VSPLSAP-LFALPISSTK-MFPASEQAALQRLKQFCYERVIHYAKWRDIPAIDGTSQLSP 243 Query: 248 YLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPF 307 YL+IG++S RQC+NRL + D L S AF W NEL+WREFY+HL+ PS+ F Sbjct: 244 YLAIGLVSVRQCFNRLYQTEPDFLENNHSSAFVWFNELVWREFYQHLIVANPSLSKQIAF 303 Query: 308 IPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLV 367 PWTE I W D AW QG TGFPIIDAAMRQLN GWMHNRLRM+TASFLVKDLL+ Sbjct: 304 QPWTENIRWRNDQTEFTAWTQGLTGFPIIDAAMRQLNQTGWMHNRLRMLTASFLVKDLLI 363 Query: 368 DWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRH 427 DWR GE YFMSQL+DGD ASNNGGWQWAASTG D+VPYFRIFNPT QG++FDP G FIRH Sbjct: 364 DWRWGENYFMSQLIDGDFASNNGGWQWAASTGTDAVPYFRIFNPTTQGRKFDPDGEFIRH 423 Query: 428 WLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQ 480 WLPEL +VP + IH P W K L+YP PIVDH KA + Y AKK+ Sbjct: 424 WLPELADVPDRDIHTPSEWAIKTGHYLDYPQPIVDHAKARVTAIASYEEAKKR 476 >gi|294637450|ref|ZP_06715740.1| deoxyribodipyrimidine photolyase [Edwardsiella tarda ATCC 23685] gi|291089391|gb|EFE21952.1| deoxyribodipyrimidine photolyase [Edwardsiella tarda ATCC 23685] Length = 477 Score = 515 bits (1326), Expect = e-144, Method: Compositional matrix adjust. Identities = 243/473 (51%), Positives = 320/473 (67%), Gaps = 4/473 (0%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M+ H+VWLRNDLR+TDN+AL+AAC + DA+V+A+++ATP QW+ ++ RQ+ FI+ +L Sbjct: 1 MTTHVVWLRNDLRVTDNRALHAACADPDARVLALYVATPRQWQAQDMAPRQAQFIWQNLQ 60 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 ++ L+ + I +++ + + +C Q + T LF+NRQYE+NE RRD+ L Sbjct: 61 CLRLELAARHIALHGLSVADYAAQRQAVAHFCAQHQATALFFNRQYELNERRRDEALCAT 120 Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 L + C FDD++LLPPG++L A QM+KV+TPF+ A +Q L Q D LP P R Sbjct: 121 LS--IPCHGFDDALLLPPGAVLTAAGQMFKVFTPFKHAFLQALGQQDNAPLPAP-TRRAY 177 Query: 187 PVTPSNIPRFFDYPFQAIDP-MFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245 P P + FDYP +D +FP GE A L FC+ + Y +RD PA GTS L Sbjct: 178 PCAPPPVLPTFDYPAATVDATLFPAGEAAAQARLAHFCRTDLATYAVRRDFPAQAGTSLL 237 Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305 SPYL++GV+SPRQC L+ +D G +WLNELIWREFYRHL+ +P +C + Sbjct: 238 SPYLTLGVVSPRQCLAVLQSGMLDSPNAASGGGAAWLNELIWREFYRHLLVAWPDLCRHR 297 Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365 PF+PWT +I W D L+ W+QG TGFP+IDAAMRQLN GWMHNRLRM+TASFLVKDL Sbjct: 298 PFLPWTARIRWRDDEQGLRRWQQGMTGFPLIDAAMRQLNHCGWMHNRLRMLTASFLVKDL 357 Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425 L+DWR+GE YF+SQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG+R+D QG FI Sbjct: 358 LIDWRLGERYFLSQLIDGDLAANNGGWQWAASTGCDAAPYFRIFNPTTQGQRYDAQGQFI 417 Query: 426 RHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478 R WLP L +VP IH P W + L+YP P+VDH +A TL + A+ Sbjct: 418 RRWLPALKDVPDSEIHHPQRWALRQRRVLDYPDPMVDHARARQDTLLAFQRAR 470 >gi|238920766|ref|YP_002934281.1| deoxyribodipyrimidine photo-lyase [Edwardsiella ictaluri 93-146] gi|238870335|gb|ACR70046.1| deoxyribodipyrimidine photo-lyase [Edwardsiella ictaluri 93-146] Length = 471 Score = 512 bits (1319), Expect = e-143, Method: Compositional matrix adjust. Identities = 247/470 (52%), Positives = 321/470 (68%), Gaps = 9/470 (1%) Query: 12 VWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQKS 71 +WLR+DLR+TDN+AL+AAC + A+V+A+++ATP QW ++ RQ+ FI+ +LL +Q + Sbjct: 1 MWLRSDLRMTDNRALHAACADVRARVVALYVATPRQWLAQEMAPRQAQFIWQNLLALQVT 60 Query: 72 LSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHRV 131 L Q+ I ++ + CL++R LF NRQYE+NE RRD L L + Sbjct: 61 LGQRQIPLYCLSVDDYAAQARAVREVCLRERADALFVNRQYELNERRRDDALAAALT--I 118 Query: 132 ICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPS 191 C FDD++LL PG++L A QM+KV+TPF++A ++ L+ ADLR LP P+ R G P Sbjct: 119 PCHFFDDALLLAPGTVLTGAGQMFKVFTPFKRAFLRGLMSADLRVLPAPSPRQPGSAPPV 178 Query: 192 NIPRFFDYPFQAID-PMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLS 250 RF +YP +D +FP GE A L +FC + Y +RD PA GTSQLSPYL+ Sbjct: 179 QAERF-NYPDAEVDSALFPAGEAAAQTRLVQFCHGALAAYAARRDFPAQAGTSQLSPYLT 237 Query: 251 IGVLSPRQCWNRLKEEFVDLLIKP--KSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFI 308 +GVLSPRQC L+ + L+ P SGA +WLNELIWREFYRHL+ +P +C +PFI Sbjct: 238 LGVLSPRQCLAALQPQ---ALVSPGLSSGAEAWLNELIWREFYRHLLVAWPDLCRHRPFI 294 Query: 309 PWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVD 368 PWT +I W D L W+QG TGFP++DAAMRQLN GWMHNRLRM+TASFLVKDLL+D Sbjct: 295 PWTARIRWRDDPAGLLRWQQGMTGFPLVDAAMRQLNRCGWMHNRLRMLTASFLVKDLLID 354 Query: 369 WRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHW 428 WR+GE YF+ QLLDGDLA+NNGGWQWAASTG+D+ PYFRIFNP +QG+R+DPQG FIR W Sbjct: 355 WRLGERYFLRQLLDGDLAANNGGWQWAASTGSDAAPYFRIFNPRVQGQRYDPQGQFIRRW 414 Query: 429 LPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478 LPEL +VP IH P W + L+YP P VDH +A TL + A+ Sbjct: 415 LPELRDVPDSDIHHPQRWALRRQRVLDYPDPQVDHARARQDTLLAFARAR 464 >gi|237747870|ref|ZP_04578350.1| deoxyribodipyrimidine photolyase [Oxalobacter formigenes OXCC13] gi|229379232|gb|EEO29323.1| deoxyribodipyrimidine photolyase [Oxalobacter formigenes OXCC13] Length = 498 Score = 508 bits (1309), Expect = e-142, Method: Compositional matrix adjust. Identities = 236/480 (49%), Positives = 321/480 (66%) Query: 2 KATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFI 61 +A HLVW R DLR+TDNKAL AAC + DA V A+F A QW +HG+S RQ F+ Sbjct: 4 QAGNPSRKHLVWFRQDLRLTDNKALAAACEDKDATVYALFTAPLSQWEEHGVSERQVAFM 63 Query: 62 YASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDK 121 + L ++ + L + GI H C NFDD+ ++ +C ++++ +F+N QYE+NE RRD+ Sbjct: 64 HRHLEKLSEGLERIGIPLVCHVCGNFDDAARFVIDFCRREQIDDVFFNNQYELNEQRRDR 123 Query: 122 LLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPA 181 LE L +DD +LLPPG+ N +MY+V+TPF++ ++ L AD SLP P Sbjct: 124 WLEDNLPQETSLNRYDDCLLLPPGAANNRQGEMYRVFTPFKRTFLEKLGSADTGSLPQPE 183 Query: 182 IRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQG 241 RL + FF Y + + GE+ A+ +L FC+EKV+ Y + RD P + G Sbjct: 184 RRLHVTRIKGSSSPFFPYEKVSFGAEYTPGEEAAIALLENFCREKVHDYDKTRDRPDLDG 243 Query: 242 TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSV 301 TS++S YL+IGVLSPRQC N L E D + + K G WLNEL+WREFY HL+A +P + Sbjct: 244 TSRVSAYLAIGVLSPRQCLNALLAEVPDAIWQSKGGGAVWLNELVWREFYYHLIAAFPRL 303 Query: 302 CMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFL 361 C +PF+ WT++I WN + +AW +G TG+PI+DAAMR+L GWMHNRLRMI ASFL Sbjct: 304 CRYEPFLEWTDRIVWNANEADFRAWVEGRTGYPIVDAAMRELKETGWMHNRLRMIVASFL 363 Query: 362 VKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQ 421 VKDLLVDWR GE YFMSQL+DG+L +NNGGWQW+ASTG D++P+FRIFNP QG++FDP Sbjct: 364 VKDLLVDWRKGERYFMSQLIDGNLPANNGGWQWSASTGVDAMPWFRIFNPVTQGQKFDPA 423 Query: 422 GTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481 G ++R WLPEL +VP IH P W KN + L+YP P+VDH++A TLN + A ++++ Sbjct: 424 GHYVRRWLPELKDVPEGDIHTPQLWAKKNHVVLDYPDPVVDHRQAREKTLNAFNAVRQKA 483 >gi|269139942|ref|YP_003296643.1| deoxyribodipyrimidine photo-lyase [Edwardsiella tarda EIB202] gi|267985603|gb|ACY85432.1| deoxyribodipyrimidine photo-lyase [Edwardsiella tarda EIB202] gi|304559777|gb|ADM42441.1| Deoxyribodipyrimidine photolyase [Edwardsiella tarda FL6-60] Length = 471 Score = 502 bits (1292), Expect = e-140, Method: Compositional matrix adjust. Identities = 243/468 (51%), Positives = 317/468 (67%), Gaps = 5/468 (1%) Query: 12 VWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQKS 71 +WLR+DLR+TDN+AL+AAC ++ A+V+A+++ATP QW ++ RQ+ FI+ +L +Q++ Sbjct: 1 MWLRSDLRMTDNRALHAACADARARVVALYVATPRQWLAQEMAPRQAQFIWQNLSALQEA 60 Query: 72 LSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHRV 131 L Q+ I ++ + CL++R LF NRQYE+NE RRD L L Sbjct: 61 LGQRQIPLYCLSVDDYAAQARTVREVCLRERADALFANRQYELNERRRDDALAAALP--F 118 Query: 132 ICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPS 191 C FDD++LL PG++L A M+KV+TPF++A ++ L ADLR LP P+ R P+ Sbjct: 119 PCHFFDDALLLAPGAVLTGAGAMFKVFTPFKRAFLRGLASADLRVLPAPSPRQPIAAAPT 178 Query: 192 NIPRFFDYPFQAID-PMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLS 250 + R DYP A+D +FP GE A L +FC + Y +RD PA GTSQLSPYL+ Sbjct: 179 PVARV-DYPDAAVDSALFPAGETAAQVRLAQFCHGALATYAARRDFPAQAGTSQLSPYLT 237 Query: 251 IGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPW 310 +GVLSPRQC + P SGA +WLNELIWREFYRHL+ +P +C +PFIPW Sbjct: 238 LGVLSPRQC-LAALQAQALASPSPSSGAEAWLNELIWREFYRHLLVAWPDLCRHRPFIPW 296 Query: 311 TEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWR 370 T +I W D LQ W+QG TGFP++DAAMRQLN GWMHNRLRM+TASFLVKDLL+DWR Sbjct: 297 TARIRWRDDPAGLQRWQQGMTGFPLVDAAMRQLNRCGWMHNRLRMLTASFLVKDLLIDWR 356 Query: 371 IGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLP 430 +GE YF+ QL+DGDLA+NNGGWQWAASTG+D+ PYFRIFNP +QG+R+DPQG FIR WLP Sbjct: 357 LGERYFLRQLIDGDLAANNGGWQWAASTGSDAAPYFRIFNPRVQGQRYDPQGQFIRRWLP 416 Query: 431 ELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478 EL VP IH P W + L+YP P+VDH +A TL + A+ Sbjct: 417 ELREVPDSDIHHPQRWALRQRRVLDYPDPLVDHARARQDTLLAFARAR 464 >gi|297521407|ref|ZP_06939793.1| deoxyribodipyrimidine photolyase [Escherichia coli OP50] Length = 452 Score = 498 bits (1281), Expect = e-138, Method: Compositional matrix adjust. Identities = 240/456 (52%), Positives = 319/456 (69%), Gaps = 9/456 (1%) Query: 29 ACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFD 88 AC NS A+V+A++IATP QW H +S RQ+ I A L +Q +L++KGI + + +F Sbjct: 2 ACRNSSARVLALYIATPRQWATHNMSPRQAELINAQLNGLQIALAEKGIPLLFREVDDFV 61 Query: 89 DSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHRVICKSFDDSVLLPPGSIL 148 S+E + C + VT LFYN QYE+NE RD +E+ L++ V+C+ FDDSV+LPPG+++ Sbjct: 62 ASVEIVKQVCAENSVTHLFYNYQYEVNERARDVEVERALRN-VVCEGFDDSVILPPGAVM 120 Query: 149 NHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPSNIPRF-FDYPFQAIDPM 207 +MYKV+TPF+ A ++ L + + P +R +G + P+ P +YP Q+ D Sbjct: 121 TGNHEMYKVFTPFKNAWLKRLREGMPECVAAPKVRSSGSIEPA--PSITLNYPRQSFDTA 178 Query: 208 -FPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEE 266 FP+ E+ A+ LR+FC+ Y +QRD PA++GTS+LS L+ G LSPRQC +RL E Sbjct: 179 HFPVEEKAAIAQLRQFCQNGAGEYEQQRDFPAVEGTSRLSASLATGGLSPRQCLHRLLAE 238 Query: 267 FVDLLIKPKSGAFS-WLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQA 325 L GA S WL+ELIWREFYRHLM +YPS+C PFI WT++++W + LQA Sbjct: 239 QPQAL---DGGAGSVWLSELIWREFYRHLMTYYPSLCKHCPFIAWTDRVQWQSNPAHLQA 295 Query: 326 WKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDL 385 W++G TG+PI+DAAMRQLN+ GWMHNRLRMITASFLVKDLL+DWR GE YFMSQL+DGDL Sbjct: 296 WQEGKTGYPIVDAAMRQLNSTGWMHNRLRMITASFLVKDLLIDWREGERYFMSQLIDGDL 355 Query: 386 ASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHS 445 A+NNGGWQWAASTG D+ PYFRIFNPT QG++FD +G FIR WLPEL +VP + +H P Sbjct: 356 AANNGGWQWAASTGTDAAPYFRIFNPTTQGEKFDREGEFIRRWLPELRDVPGKAVHEPWK 415 Query: 446 WLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481 W K + L+YP PIVDHK+A TL Y A+K + Sbjct: 416 WAQKAGVMLDYPQPIVDHKEARLRTLAAYEEARKGA 451 >gi|62179298|ref|YP_215715.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|62126931|gb|AAX64634.1| deoxyribodipyrimidine photolyase (photoreactivation) [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] Length = 446 Score = 493 bits (1268), Expect = e-137, Method: Compositional matrix adjust. Identities = 233/432 (53%), Positives = 309/432 (71%), Gaps = 6/432 (1%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M HLVW R DLR+ DN AL AAC ++ A+V+A++I+TP QW+ H ++ RQ+ FI A L Sbjct: 1 MPTHLVWFRRDLRLQDNLALAAACRDASARVLALYISTPAQWQAHDMAPRQAAFISAQLN 60 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 +Q +L++KGI +H+ ++F+ SIE + ++C Q V+ LFYN QY+ NE +RD +EK Sbjct: 61 ALQAALAEKGIPLLFHEVADFNASIETVKNFCRQHDVSHLFYNYQYQFNERQRDAAVEKT 120 Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 L VIC+ FDDSV+L PG+++ +MYKV+TPF+ A ++ L + +P P IR++G Sbjct: 121 LPS-VICEGFDDSVILAPGAVMTGNHEMYKVFTPFKNAWLKRLKEDIPPCVPAPKIRVSG 179 Query: 187 PVTPSNIPRFFDYPFQAIDP-MFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245 ++ P +YP QA D +FP+ E + LR+FC + Y +RD PA+ GTS+L Sbjct: 180 ALSTPLTPVSLNYPQQAFDAALFPVEENAVIAQLRQFCAQGADEYALRRDFPAVDGTSRL 239 Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFS-WLNELIWREFYRHLMAFYPSVCMG 304 S L+ G LSPRQC +RL E L G S WLNELIWREFYRHLM +YP++C Sbjct: 240 SASLATGGLSPRQCLHRLLAEQPQAL---DGGPGSVWLNELIWREFYRHLMTWYPALCKH 296 Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364 +PFI WT+++ W ++SH QAW++G TG+PI+DAAMRQLN GWMHNRLRMITASFLVKD Sbjct: 297 QPFIRWTKRVAWQENSHYFQAWQKGETGYPIVDAAMRQLNATGWMHNRLRMITASFLVKD 356 Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424 LL+DWR+GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG+RFD G F Sbjct: 357 LLIDWRLGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGERFDRDGEF 416 Query: 425 IRHWLPELNNVP 436 IR WLP L ++P Sbjct: 417 IRQWLPALRDMP 428 >gi|323193139|gb|EFZ78358.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp. enterica serovar Montevideo str. 609458-1] Length = 427 Score = 473 bits (1217), Expect = e-131, Method: Compositional matrix adjust. Identities = 229/431 (53%), Positives = 302/431 (70%), Gaps = 6/431 (1%) Query: 53 ISARQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQY 112 ++ RQ+ FI A L +Q +L++KGI +H+ ++F SIE + + C Q V+ LFYN QY Sbjct: 1 MAPRQAAFISAQLNALQTALAEKGIPLLFHEVADFSASIETVKNVCRQHDVSHLFYNYQY 60 Query: 113 EINEVRRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQA 172 E NE +RD +EK L VIC+ FDDSV+L PG+++ +MYKV+TPF+ A ++ L + Sbjct: 61 EFNERQRDAAVEKTLPS-VICEGFDDSVILAPGAVMTGNHEMYKVFTPFKNAWLKRLKED 119 Query: 173 DLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDP-MFPIGEQNALHILRKFCKEKVYYYV 231 +P P IR++G ++ P +YP QA D +FP+ E + LR+FC + Y Sbjct: 120 IPPCVPAPKIRVSGALSTPLTPVSLNYPQQAFDAALFPVEENAVIAQLRQFCAQGADEYE 179 Query: 232 EQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFS-WLNELIWREF 290 +RD PA+ GTS+LS L+ G LSPRQC +RL E L G S WLNELIWREF Sbjct: 180 SRRDFPAVDGTSRLSASLATGGLSPRQCLHRLLAEQPQAL---DGGPGSVWLNELIWREF 236 Query: 291 YRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMH 350 YRHLM +YP++C +PFI WT+++ W ++SH QAW++G TG+PI+DAAMRQLN GWMH Sbjct: 237 YRHLMIWYPALCKHQPFIRWTKRVAWQENSHDFQAWQKGETGYPIVDAAMRQLNATGWMH 296 Query: 351 NRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFN 410 NRLRMITASFLVKDLL+DWR+GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFN Sbjct: 297 NRLRMITASFLVKDLLIDWRLGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFN 356 Query: 411 PTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHT 470 PT QG+RFD G FIR WLP L ++P + IH P W +K + L+YP PIV+HK+A T Sbjct: 357 PTTQGERFDRDGEFIRQWLPALRDIPGKAIHEPWRWAEKAGVVLDYPRPIVEHKQARIAT 416 Query: 471 LNQYYAAKKQS 481 L+ Y AA+K + Sbjct: 417 LSAYEAARKGA 427 >gi|213428164|ref|ZP_03360914.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp. enterica serovar Typhi str. E02-1180] Length = 427 Score = 469 bits (1206), Expect = e-130, Method: Compositional matrix adjust. Identities = 227/431 (52%), Positives = 300/431 (69%), Gaps = 6/431 (1%) Query: 53 ISARQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQY 112 ++ RQ+ FI A L +Q +L++KGI +H+ ++F+ SIE + + C Q V+ LFYN QY Sbjct: 1 MAPRQAAFISAQLNALQTALAEKGIPLLFHEVADFNASIETVKNVCRQHDVSHLFYNYQY 60 Query: 113 EINEVRRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQA 172 E NE +RD +EK L VIC+ FDDSV+L PG+++ +MYKV+TPF+ A ++ L + Sbjct: 61 EFNERQRDAAVEKTLPS-VICEGFDDSVILAPGAVMTGNHEMYKVFTPFKNAWLKRLKED 119 Query: 173 DLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDP-MFPIGEQNALHILRKFCKEKVYYYV 231 +P P IR++G ++ P +YP QA D +FP+ E + LR FC + Y Sbjct: 120 IPPCVPAPKIRVSGALSIPLTPVSLNYPQQAFDAALFPVEENAVIAQLRHFCSQGADEYA 179 Query: 232 EQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFS-WLNELIWREF 290 +RD PA+ GTS+LS L+ G LSPRQC +RL E L G S WLNELIWREF Sbjct: 180 SRRDFPAVDGTSRLSASLATGGLSPRQCLHRLLAEQPQAL---DGGPGSVWLNELIWREF 236 Query: 291 YRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMH 350 YRHLM +YP++C +PFI WT+++ W ++ H QAW++G TG+PI+DAAMRQLN GWMH Sbjct: 237 YRHLMTWYPALCKHQPFIRWTKRVAWQENPHYFQAWQKGETGYPIVDAAMRQLNATGWMH 296 Query: 351 NRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFN 410 NRLRMITASFLVKDLL+DWR+GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFN Sbjct: 297 NRLRMITASFLVKDLLIDWRLGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFN 356 Query: 411 PTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHT 470 PT Q +RFD G FIR WLP L ++P + IH P W +K + L+YP PIV+HK+A T Sbjct: 357 PTTQRERFDRDGEFIRQWLPALRDIPGKAIHEPWRWAEKAGVVLDYPRPIVEHKQARIAT 416 Query: 471 LNQYYAAKKQS 481 L+ Y AA+K + Sbjct: 417 LSAYEAARKGA 427 >gi|213581260|ref|ZP_03363086.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp. enterica serovar Typhi str. E98-0664] Length = 426 Score = 467 bits (1202), Expect = e-129, Method: Compositional matrix adjust. Identities = 227/428 (53%), Positives = 298/428 (69%), Gaps = 6/428 (1%) Query: 56 RQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEIN 115 RQ+ FI A L +Q +L++KGI +H+ ++F+ SIE + + C Q V+ LFYN QYE N Sbjct: 3 RQAAFISAQLNALQTALAEKGIPLLFHEVADFNASIETVKNVCRQHDVSHLFYNYQYEFN 62 Query: 116 EVRRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLR 175 E +RD +EK L VIC+ FDDSV+L PG+++ +MYKV+TPF+ A ++ L + Sbjct: 63 ERQRDAAVEKTLPS-VICEGFDDSVILAPGAVMTGNHEMYKVFTPFKNAWLKRLKEDIPP 121 Query: 176 SLPVPAIRLTGPVTPSNIPRFFDYPFQAIDP-MFPIGEQNALHILRKFCKEKVYYYVEQR 234 +P P IR++G ++ P +YP QA D +FP+ E + LR FC + Y +R Sbjct: 122 CVPAPKIRVSGALSIPLTPVSLNYPQQAFDAALFPVEENAVIAQLRHFCSQGADEYASRR 181 Query: 235 DIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFS-WLNELIWREFYRH 293 D PA+ GTS+LS L+ G LSPRQC +RL E L G S WLNELIWREFYRH Sbjct: 182 DFPAVDGTSRLSASLATGGLSPRQCLHRLLAEQPQAL---DGGPGSVWLNELIWREFYRH 238 Query: 294 LMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRL 353 LM +YP++C +PFI WT+++ W ++ H QAW++G TG+PI+DAAMRQLN GWMHNRL Sbjct: 239 LMTWYPALCKHQPFIRWTKRVAWQENPHYFQAWQKGETGYPIVDAAMRQLNATGWMHNRL 298 Query: 354 RMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTI 413 RMITASFLVKDLL+DWR+GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT Sbjct: 299 RMITASFLVKDLLIDWRLGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTT 358 Query: 414 QGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQ 473 Q +RFD G FIR WLP L ++P + IH P W +K + L+YP PIV+HK+A TL+ Sbjct: 359 QRERFDRDGEFIRQWLPALRDIPGKAIHEPWRWAEKAGVVLDYPRPIVEHKQARIATLSA 418 Query: 474 YYAAKKQS 481 Y AA+K + Sbjct: 419 YEAARKGA 426 >gi|300957650|ref|ZP_07169842.1| FAD binding domain of DNA photolyase [Escherichia coli MS 175-1] gi|300315627|gb|EFJ65411.1| FAD binding domain of DNA photolyase [Escherichia coli MS 175-1] Length = 395 Score = 449 bits (1155), Expect = e-124, Method: Compositional matrix adjust. Identities = 215/397 (54%), Positives = 284/397 (71%), Gaps = 9/397 (2%) Query: 86 NFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHRVICKSFDDSVLLPPG 145 +F S+E + C + VT LFYN QYE+NE RD +E+ L++ V+C+ FDDSV+LPPG Sbjct: 3 DFVASVEIVKQVCAENSVTHLFYNYQYEVNERARDVEVERALRN-VVCEGFDDSVILPPG 61 Query: 146 SILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPSNIPRF-FDYPFQAI 204 +++ +MYKV+TPF+ A ++ L + + P +R +G + PS P +YP Q+ Sbjct: 62 AVMTGNHEMYKVFTPFKNAWLKRLREGMPECVAAPKVRSSGSIEPS--PSITLNYPRQSF 119 Query: 205 DPM-FPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRL 263 D FP+ E+ A+ LR+FC+ Y +QRD PA++GTS+LS L+ G LSPRQC +RL Sbjct: 120 DTAHFPVEEKAAIAQLRQFCQNGAGEYEQQRDFPAVEGTSRLSASLATGGLSPRQCLHRL 179 Query: 264 KEEFVDLLIKPKSGAFS-WLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHL 322 E L GA S WLNELIWREFYRHL+ ++PS+C +PFI WT++++W + Sbjct: 180 LAEQPQAL---DGGAGSVWLNELIWREFYRHLITYHPSLCKHRPFIAWTDRVQWQSNPAH 236 Query: 323 LQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLD 382 LQAW++G TG+PI+DAAMRQLN+ GWMHNRLRMITASFLVKDLL+DWR GE YFMSQL+D Sbjct: 237 LQAWQEGKTGYPIVDAAMRQLNSTGWMHNRLRMITASFLVKDLLIDWREGERYFMSQLID 296 Query: 383 GDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHA 442 GDLA+NNGGWQWAASTG D+ PYFRIFNPT QG++FD +G FIR WLPEL +VP + +H Sbjct: 297 GDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGEKFDHEGEFIRQWLPELRDVPGKVVHE 356 Query: 443 PHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479 P W K ++L+YP PIV+HK+A TL Y AA+K Sbjct: 357 PWKWAQKAGVTLDYPQPIVEHKEARVQTLAAYEAARK 393 >gi|331656728|ref|ZP_08357690.1| deoxyribodipyrimidine photo-lyase (DNA photolyase)(Photoreactivating enzyme) [Escherichia coli TA206] gi|331054976|gb|EGI26985.1| deoxyribodipyrimidine photo-lyase (DNA photolyase)(Photoreactivating enzyme) [Escherichia coli TA206] Length = 382 Score = 446 bits (1146), Expect = e-123, Method: Compositional matrix adjust. Identities = 211/387 (54%), Positives = 279/387 (72%), Gaps = 9/387 (2%) Query: 98 CLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKV 157 C + R+T LFYN QYE+NE RD E+ L++ V+C+ FDDSV+LPPG+++ +MYKV Sbjct: 2 CAENRITHLFYNYQYEVNERARDVQAERTLRN-VVCEGFDDSVILPPGAVMTGNHEMYKV 60 Query: 158 YTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPSNIPRF-FDYPFQAIDPM-FPIGEQNA 215 +TPF+ A ++ L + + P +R +G + P+ P +YP Q+ D FP+ E+ A Sbjct: 61 FTPFKNAWLKRLREGMPECVAAPKVRSSGSIEPA--PSITLNYPRQSFDTAHFPVEEKAA 118 Query: 216 LHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPK 275 + LR+FC+ Y +QRD PA++GTS+LS L+ G LSPRQC +RL E +L + Sbjct: 119 IAQLRQFCQNGAGEYEQQRDFPAVEGTSRLSASLATGGLSPRQCLHRLLAEQPQVL---E 175 Query: 276 SGAFS-WLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFP 334 G S WLNELIWREFYRHLM +YPS+C +PFI WT++++W + L+AW++G TG+P Sbjct: 176 GGPGSVWLNELIWREFYRHLMTYYPSLCKHRPFIAWTDRVQWQSNPAHLKAWQEGKTGYP 235 Query: 335 IIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQW 394 I+DAAMRQLN+ GWMHNRLRMITASFLVKDLL+DWR GE YFMSQL+DGDLA+NNGGWQW Sbjct: 236 IVDAAMRQLNSTGWMHNRLRMITASFLVKDLLIDWREGERYFMSQLIDGDLAANNGGWQW 295 Query: 395 AASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSL 454 AASTG D+ PYFRIFNPT QG++FD +G FIR WLPEL +VP + +H P W K ++L Sbjct: 296 AASTGTDAAPYFRIFNPTTQGEKFDREGEFIRQWLPELRDVPGKVVHEPWKWAQKAGMTL 355 Query: 455 NYPLPIVDHKKACHHTLNQYYAAKKQS 481 +YP PIVDHK+A TL Y A+K + Sbjct: 356 DYPQPIVDHKEARLRTLAAYEEARKGA 382 >gi|89073732|ref|ZP_01160246.1| deoxyribodipyrimidine photolyase [Photobacterium sp. SKA34] gi|89050507|gb|EAR55999.1| deoxyribodipyrimidine photolyase [Photobacterium sp. SKA34] Length = 489 Score = 444 bits (1142), Expect = e-122, Method: Compositional matrix adjust. Identities = 222/476 (46%), Positives = 311/476 (65%), Gaps = 13/476 (2%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 ++W R+DLR+ DN AL A S +IA+FIATP QW QH ++A Q FI+ L +++ Sbjct: 12 IIWFRSDLRVVDNTALNHAI-ESGLPIIALFIATPMQWHQHNMAAVQVDFIHRRLQVLKQ 70 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130 L+++ I Q + ++F +S+ ++ C+ +F N+QY INE +RD + + L + Sbjct: 71 QLAKRNIPLQVIEVNDFSESVYLIEQVCIDYNAVHVFANKQYPINEHKRDNSVGELLAKK 130 Query: 131 VICKS-FDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV- 188 I S FDD+ +L P +L +++KV+TPFR A I+ + + + + +T V Sbjct: 131 SIKFSIFDDNYILQPEMVLTRDGELFKVFTPFRNAWIKRFSSSTCYPVTINSDIVTSGVV 190 Query: 189 ----TPSNIPRFFDYPFQAIDP-MFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS 243 + S+ + F+YP ID ++P+ E+ L FC+ K Y + RD PAI GTS Sbjct: 191 SKLLSDSSQIKAFNYPI--IDSVLWPVDEETIAQRLETFCETKAETYHQNRDFPAIDGTS 248 Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLL-IKPKSGAFSWLNELIWREFYRHLMAFYPSVC 302 LSPYL+IG LS RQC ++L++ F + I GAF+WLNE++WREFY HL+ YP + Sbjct: 249 CLSPYLAIGALSARQCLHQLQQYFPNAFEINKDDGAFTWLNEIVWREFYGHLLHRYPELS 308 Query: 303 MGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLV 362 +PF +T+ ++W D LL+AW++G TGFPI+DA MRQL GWMHNRLRMITASFL Sbjct: 309 KHQPFQKFTQFVKWKDDEALLKAWQEGKTGFPIVDAGMRQLRATGWMHNRLRMITASFLT 368 Query: 363 KDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQG 422 KDLL DWR+GE++FM L+DGD +SNNGGWQWAASTG D+ PYFR+FNPT+QG+RFDP+G Sbjct: 369 KDLLCDWRVGEQWFMQHLIDGDFSSNNGGWQWAASTGTDAQPYFRVFNPTLQGQRFDPKG 428 Query: 423 TFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478 FIR W+ EL +VP +YIH PH W + SLNYPLPIVDHK+A + + AK Sbjct: 429 DFIRTWVKELEHVPDKYIHTPHQWASEE--SLNYPLPIVDHKEARLIAIESFKQAK 482 >gi|90577743|ref|ZP_01233554.1| deoxyribodipyrimidine photolyase [Vibrio angustum S14] gi|90440829|gb|EAS66009.1| deoxyribodipyrimidine photolyase [Vibrio angustum S14] Length = 489 Score = 440 bits (1131), Expect = e-121, Method: Compositional matrix adjust. Identities = 228/487 (46%), Positives = 311/487 (63%), Gaps = 14/487 (2%) Query: 1 MKATTAMSVHLV-WLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSH 59 M T H+V W R+DLR+ DN AL A +S +IA+FIATP QW QH ++A Q Sbjct: 1 MTNKTVTEQHVVIWFRSDLRVVDNTALNHAI-DSGLPIIALFIATPMQWHQHNMAAVQVD 59 Query: 60 FIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRR 119 FI+ L +++ L+++ I Q + ++F +S+ +D C +F N+QY INE +R Sbjct: 60 FIHRRLQVLKQQLAKRNIPLQVIEVNDFAESVHVIDQICFDYNAVHVFANKQYPINEQQR 119 Query: 120 DKLLEKRLQHRVICKS-FDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLP 178 D + + + I S FDD+ +L P ++L +++KV+TPFR A I+ + + Sbjct: 120 DNSAGELIAKKGIKFSIFDDNYILQPETVLTRDGELFKVFTPFRNAWIKRFTLSPCYPVT 179 Query: 179 VPAIRLTGP-----VTPSNIPRFFDYPFQAIDP-MFPIGEQNALHILRKFCKEKVYYYVE 232 +T ++ SN + F+YP ID ++P+ E+ L F + K Y + Sbjct: 180 KDGYIVTSDAVIKLLSVSNPIKAFNYPI--IDSVLWPVDEETIAQRLETFFETKAETYHQ 237 Query: 233 QRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLL-IKPKSGAFSWLNELIWREFY 291 RD PAI GTS LSPYL+IG LS RQC +L + F + L I GAF+WLNE++WREFY Sbjct: 238 NRDFPAIDGTSCLSPYLAIGALSARQCLYQLLQHFPNALEINKDDGAFTWLNEIVWREFY 297 Query: 292 RHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHN 351 HL+ YP + +PF +T ++W D+ LL+AW++G TGFPI+DAAMRQL + GWMHN Sbjct: 298 GHLLHRYPELSQYQPFQKFTRFVQWKDDAVLLKAWQEGKTGFPIVDAAMRQLRSTGWMHN 357 Query: 352 RLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNP 411 RLRMITASFL KDLL DWR+GE++FM L+DGD ASNNGGWQWAASTG D+ PYFR+FNP Sbjct: 358 RLRMITASFLTKDLLCDWRVGEQWFMQHLIDGDFASNNGGWQWAASTGTDAQPYFRVFNP 417 Query: 412 TIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTL 471 T+QG+RFDP+G FIR W+ EL +VP +YIH PH W SLNYPLPIVDHK+A + Sbjct: 418 TLQGQRFDPKGDFIRTWVKELEHVPDKYIHTPHQWASAE--SLNYPLPIVDHKEARLIAI 475 Query: 472 NQYYAAK 478 + AK Sbjct: 476 ESFKQAK 482 >gi|330448252|ref|ZP_08311900.1| deoxyribodipyrimidine photolyase [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] gi|328492443|dbj|GAA06397.1| deoxyribodipyrimidine photolyase [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] Length = 489 Score = 440 bits (1131), Expect = e-121, Method: Compositional matrix adjust. Identities = 229/476 (48%), Positives = 304/476 (63%), Gaps = 13/476 (2%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 ++W R+DLR DN AL A + VIA+F+ATP QW +H ++A Q FI+ L +++ Sbjct: 12 IIWFRDDLRTVDNTALNHAI-ETGLPVIALFVATPMQWHEHHVAAIQIDFIHRRLRVLKQ 70 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130 L+ I Q QC++F +S++ + YC Q RV +F N+QY +NE RD+ L L Sbjct: 71 QLAALNIPLQVMQCNDFSESVDAIAEYCHQHRVVHVFANKQYPLNEQLRDEKLGVLLAQS 130 Query: 131 VICKS-FDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVP-----AIRL 184 I +S FDD+ +L P +ILN +++KV+TP+R A I+ +S PV A+ Sbjct: 131 GIKQSLFDDNYVLEPETILNREGELFKVFTPYRNAWIKRFSAE--QSYPVTTNKEVALSD 188 Query: 185 TGPVTPSNIPRFFDYPFQAIDP-MFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS 243 T ++ + I+ ++P+ E+ L L FC K Y +QRD PAI GTS Sbjct: 189 TTSAMLADSTDIQSLGYPVIESVLWPVDEEAILQRLDTFCVTKAQDYHQQRDFPAIDGTS 248 Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLL-IKPKSGAFSWLNELIWREFYRHLMAFYPSVC 302 LSP+L+IG LS RQC +L + F L + + GAF+WLNE+IWREFY HL+ YP + Sbjct: 249 CLSPFLAIGALSARQCVYQLLQHFPHALEVNKEDGAFTWLNEIIWREFYGHLLHRYPELS 308 Query: 303 MGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLV 362 PF +T+ + W + LL+AW+ G TGFPI+DAAMRQL GWMHNRLRMITASFL Sbjct: 309 KNHPFQDYTQYVRWQDNPILLKAWQDGKTGFPIVDAAMRQLRATGWMHNRLRMITASFLT 368 Query: 363 KDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQG 422 KDLL DWR GE++FM L+DGD ASNNGGWQWAASTG DS PYFRIFNPT+QG+RFDP+G Sbjct: 369 KDLLCDWRAGEQWFMQHLIDGDFASNNGGWQWAASTGTDSQPYFRIFNPTLQGQRFDPKG 428 Query: 423 TFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478 FIR W+ EL VP +YIH PH W + SL+YPLPIVDHK+A + + AK Sbjct: 429 DFIRTWVKELAKVPDKYIHTPHQW--DSSGSLDYPLPIVDHKEARLLAIEAFKQAK 482 >gi|332093770|gb|EGI98824.1| deoxyribodipyrimidine photo-lyase [Shigella boydii 5216-82] Length = 406 Score = 440 bits (1131), Expect = e-121, Method: Compositional matrix adjust. Identities = 213/407 (52%), Positives = 284/407 (69%), Gaps = 9/407 (2%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M+ HL W R DLR+ DN AL AAC NS A+V+A++IATP QW H +S RQ+ I A L Sbjct: 1 MTTHLAWFRQDLRLHDNLALAAACRNSSARVLALYIATPRQWETHNMSPRQAELINAQLN 60 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 +Q +L++KGI + + +F S+E + C + VT LFYN QYE+NE RD +E+ Sbjct: 61 GLQIALAEKGIPLLFREVDDFVASVEIVKQVCAENSVTHLFYNYQYEVNERARDVDVERA 120 Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 L++ V+C+ FDDSV+LPPG+++ +MYKV+TPF+ A ++ L + + P +R +G Sbjct: 121 LRN-VVCEGFDDSVILPPGAVMTGNHEMYKVFTPFKNAWLKRLREGMPECVAAPKVRSSG 179 Query: 187 PVTPSNIPRF-FDYPFQAIDPM-FPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244 + P+ P +YP Q+ D FP+ E+ A+ LR+FC+ Y +QRD PA++GTS+ Sbjct: 180 SIKPA--PSITLNYPRQSFDTAHFPVEEKAAIAQLRQFCENGAGEYEQQRDFPAVEGTSR 237 Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFS-WLNELIWREFYRHLMAFYPSVCM 303 LS L+ G L PRQC RL E L GA S WL+ELIWREFYRHLM +YPS+C Sbjct: 238 LSASLATGGLLPRQCLYRLLAEQPQAL---DGGAGSVWLSELIWREFYRHLMTYYPSLCK 294 Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363 +PFI WT++++W + LQAW++G TG+PI+DAAMRQLN+ GWMHNRLRMITASFLVK Sbjct: 295 HRPFIAWTDRVQWQSNPAHLQAWQKGKTGYPIVDAAMRQLNSTGWMHNRLRMITASFLVK 354 Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFN 410 DLL+DWR GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYF+ N Sbjct: 355 DLLIDWREGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFQSDN 401 >gi|262274043|ref|ZP_06051855.1| deoxyribodipyrimidine photolyase [Grimontia hollisae CIP 101886] gi|262221853|gb|EEY73166.1| deoxyribodipyrimidine photolyase [Grimontia hollisae CIP 101886] Length = 483 Score = 439 bits (1128), Expect = e-121, Method: Compositional matrix adjust. Identities = 224/477 (46%), Positives = 285/477 (59%), Gaps = 11/477 (2%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 + LVW R DLR+ DN AL AC + + VIA++ TP QW+ H ++ Q+ I L+ + Sbjct: 1 MKLVWFRRDLRVKDNVALTEACKSGEP-VIAIYYETPVQWKAHALAPMQADLIQRRLVTL 59 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128 ++ L I + + D + L C Q ++ +F R YE +EV RD + L Sbjct: 60 RQELETLNIPLLFRSVDRYKDINQSLAQLCQQYQIADIFCTRDYETDEVDRDNAIAGMLS 119 Query: 129 -HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187 FD + PG + N A Y+V+TPF+KA I Q DL + P+ T Sbjct: 120 LTGTTLHRFDYKCIFAPGMVTNGAGNTYRVFTPFKKAWITQATQLDLSPIGAPSPVKTDA 179 Query: 188 VT------PSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQG 241 +T P I F YP Q +PI + + LR FC+ +V +Y RD PAI G Sbjct: 180 LTSALLRQPCQIA--FRYP-QCDSVGWPIDDSAIIQRLRDFCRYRVDHYQATRDFPAIPG 236 Query: 242 TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSV 301 TSQLSPYL+IG +SPRQC RL E + + K GA WL+ELIWREFY+H+ A Y V Sbjct: 237 TSQLSPYLAIGAISPRQCLARLLAEVPNCMEKDAGGAHVWLSELIWREFYQHIAAAYIDV 296 Query: 302 CMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFL 361 GK F WT+ IEWN+D Q WKQG TGFPI+DAAMRQLN GWMHNRLRMI ASFL Sbjct: 297 SKGKAFQDWTDNIEWNRDELQFQRWKQGKTGFPIVDAAMRQLNDTGWMHNRLRMIVASFL 356 Query: 362 VKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQ 421 VKDL +DWR GE YFMS+L+DGD A+NNGGWQW+ASTG D+ PYFR+FNP Q K+FDP Sbjct: 357 VKDLHIDWRWGERYFMSKLIDGDFAANNGGWQWSASTGTDAQPYFRVFNPASQSKKFDPN 416 Query: 422 GTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478 FIR WL EL +VP +H PH W +K + L+YP PIVDHK A + + AK Sbjct: 417 VRFIRRWLKELESVPDSALHTPHIWAEKKGIELSYPAPIVDHKTARISAIEMFEMAK 473 >gi|90411278|ref|ZP_01219290.1| Deoxyribodipyrimidine photolyase [Photobacterium profundum 3TCK] gi|90327807|gb|EAS44138.1| Deoxyribodipyrimidine photolyase [Photobacterium profundum 3TCK] Length = 488 Score = 437 bits (1124), Expect = e-120, Method: Compositional matrix adjust. Identities = 229/477 (48%), Positives = 294/477 (61%), Gaps = 10/477 (2%) Query: 8 SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67 + L+W R+DLRITDN AL ACH S VIA++IATP+QW +H ++ Q I LL Sbjct: 5 GLQLIWFRSDLRITDNTALIHACH-SGRPVIALYIATPKQWYEHTVAPIQIDLIQRRLLV 63 Query: 68 VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127 +Q+ L I + ++ E + + Q ++ +F N+Q E NE +RD + + L Sbjct: 64 LQQQLHTLNIPLLICEVDDYTSIPELMKNLVNQHHISHVFCNKQDEWNEKQRDHSVNQAL 123 Query: 128 -QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 + +V FDDS + PG + +KV+TPFR+ + + P P + Sbjct: 124 VEKQVKVSIFDDSCAIAPGRVKTKQGGTFKVFTPFRREWLNVYHSLLPEAQPAPQAVVLH 183 Query: 187 PVTP-----SNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQG 241 P+T S F YP + +P+ E + L+ FC EKV+ Y E RDIPAI G Sbjct: 184 PITSELLAQSATSVSFSYP-EKDSAFWPVEEDDIRRQLQAFCLEKVHLYNEHRDIPAIDG 242 Query: 242 TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSV 301 TS LSPYL+IG LS RQC + L+ EF L + GAF WLNELIWREFYRHL Y + Sbjct: 243 TSCLSPYLAIGALSVRQCISILRSEFPHCLESSEQGAFIWLNELIWREFYRHLTESYGKL 302 Query: 302 CMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFL 361 +PF WT KI W L+ W+QG TGFPI+DAAM+QL GWMHNRLRMI ASFL Sbjct: 303 SRNQPFHAWTTKIRWRSADDELKCWQQGETGFPIVDAAMKQLLATGWMHNRLRMIVASFL 362 Query: 362 VKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQ 421 KDLL+DWR GE++FMSQL+DGD ASNNGGWQWAASTG D+ PYFR+FNPT+QG+RFDP Sbjct: 363 TKDLLIDWREGEKWFMSQLIDGDFASNNGGWQWAASTGTDAQPYFRVFNPTLQGQRFDPN 422 Query: 422 GTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478 G FIR W+ EL +VP +YIH PH W N +LNYP PIVDHK+A + + AK Sbjct: 423 GDFIRKWIKELKDVPNKYIHTPHLWDGAN--TLNYPKPIVDHKQARLLAIETFKQAK 477 >gi|269104447|ref|ZP_06157143.1| deoxyribodipyrimidine photolyase [Photobacterium damselae subsp. damselae CIP 102761] gi|268161087|gb|EEZ39584.1| deoxyribodipyrimidine photolyase [Photobacterium damselae subsp. damselae CIP 102761] Length = 494 Score = 431 bits (1107), Expect = e-118, Method: Compositional matrix adjust. Identities = 225/491 (45%), Positives = 301/491 (61%), Gaps = 24/491 (4%) Query: 8 SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67 S +L+W R+DLRITDN AL C N VIA++IATP QW QH ++ Q I L Sbjct: 13 SHNLMWFRSDLRITDNTALSEVC-NQSLPVIALYIATPMQWHQHHVAPIQVDLIKRRLAV 71 Query: 68 VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127 + + L++ I + +FD ++E ++ CL + + N QY +NE RD+ L L Sbjct: 72 LTEQLAELSIPLIVLETEDFDSTVEKIEEICLMFNIASVHCNNQYLVNEEHRDQKLAANL 131 Query: 128 Q-HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 + +++ +DD L PGS+LN + +KV+TP+ KA ++ Q + P + T Sbjct: 132 KRYQISLVQYDDDCALAPGSVLNKQGEPFKVFTPYSKAWLKQYKQQTVE--PTAMVGNTH 189 Query: 187 PVTPSNIPRF-----------FDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRD 235 I F YP Q +P+ ++ L L FC +KV Y +QRD Sbjct: 190 KELSQEIEELLAVCGTVQHYDFQYP-QVSSLTWPVDDEVILQHLYSFCCDKVGVYHQQRD 248 Query: 236 IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVD---LLIKPKSGAFSWLNELIWREFYR 292 P+++GTS LSPYL+IG LS RQC +++ VD L I + G F W+NELIWREFY Sbjct: 249 YPSLEGTSTLSPYLAIGALSVRQCLKAVQQ--VDPSCLEINKECGGFVWVNELIWREFYH 306 Query: 293 HLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNR 352 HLMA Y +C G+PF +T+ + WN+DSH L+AW+QG TGFPI+DAAMRQL GWMHNR Sbjct: 307 HLMAEYKHLCKGQPFQAYTQYVTWNEDSHYLKAWQQGKTGFPIVDAAMRQLQQTGWMHNR 366 Query: 353 LRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPT 412 LRMITASFL KDLL+ W GE +F+ L+DGD ASNNGGWQWAASTG D+ PYFR+FNPT Sbjct: 367 LRMITASFLTKDLLLHWHHGERWFLQHLIDGDFASNNGGWQWAASTGTDAQPYFRVFNPT 426 Query: 413 IQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLN 472 QG+RFDP+G FIR W+PEL +VP +YIH PH W YP PI+DHK+A + Sbjct: 427 TQGERFDPEGEFIRKWIPELVDVPNKYIHTPHLWHGDKK---GYPAPIIDHKQARLRAIE 483 Query: 473 QYYAAKKQSLL 483 + AK+ + L Sbjct: 484 VFKNAKEINTL 494 >gi|219682219|ref|YP_002468603.1| deoxyribodipyrimidine photolyase [Buchnera aphidicola str. Tuc7 (Acyrthosiphon pisum)] gi|219621952|gb|ACL30108.1| deoxyribodipyrimidine photolyase [Buchnera aphidicola str. Tuc7 (Acyrthosiphon pisum)] gi|311086037|gb|ADP66119.1| deoxyribodipyrimidine photolyase [Buchnera aphidicola str. LL01 (Acyrthosiphon pisum)] gi|311086610|gb|ADP66691.1| deoxyribodipyrimidine photolyase [Buchnera aphidicola str. TLW03 (Acyrthosiphon pisum)] Length = 483 Score = 430 bits (1106), Expect = e-118, Method: Compositional matrix adjust. Identities = 212/486 (43%), Positives = 304/486 (62%), Gaps = 28/486 (5%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M +L+W RNDLR+ DN AL+ AC N KVI++FI+TP+QW +S ++ F+Y L+ Sbjct: 1 MQKNLIWFRNDLRVHDNTALHQACQNDTDKVISLFISTPKQWHNQSVSKKKISFMYYHLI 60 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 +QK L + I+ YH+ ++F +SIE+L +C + +V LFYN +Y INE RD L++K+ Sbjct: 61 SLQKELLKLNIILYYHESTDFLNSIEYLIFFCKKHKVNNLFYNYEYAINERYRDYLVKKK 120 Query: 127 L-QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIR-- 183 L Q + K F D++L I N + YKV+T F+K +IQNL + PVP+ R Sbjct: 121 LSQKGFLVKGFHDNLLFSNRQIRNQKNETYKVFTFFKKKVIQNLHNNIPQCFPVPSKRKS 180 Query: 184 ----LTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAI 239 ++ N+ F+ F FP+GE+ A++ L+ FC K Y +RD P + Sbjct: 181 DRDIFLTSISLKNVNLNFNKSF------FPVGEKEAINRLKNFCIYKFNDYFLKRDYPFL 234 Query: 240 QGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSG-------AFSWLNELIWREFYR 292 TS LSPYLS G++S R C + +L+K K+ SW ++++WREFY Sbjct: 235 DATSMLSPYLSAGIISSRYC--------LKVLLKTKNSLPLNVLLTSSWFDQILWREFYY 286 Query: 293 HLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNR 352 HL+ +P + + + W ++I W + AWK+G TGFPIIDA MRQLN +GWMHNR Sbjct: 287 HLLIGFPKISRSESLVTWEKEIHWINNIKHFNAWKEGNTGFPIIDAGMRQLNELGWMHNR 346 Query: 353 LRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPT 412 LRMIT+SFLVK+LL++WR GEEYF+S L+DGDLA NNGGWQW+AS G DSVPY RIFNP Sbjct: 347 LRMITSSFLVKNLLINWREGEEYFISNLIDGDLALNNGGWQWSASVGCDSVPYIRIFNPL 406 Query: 413 IQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLN 472 Q K FD G FI+ ++PEL NVP +IH PH W + + ++YP PI+++ ++ +L+ Sbjct: 407 HQSKTFDESGNFIKKFIPELKNVPNHHIHQPHEWSKQKNFKIDYPNPIINYSESRKTSLS 466 Query: 473 QYYAAK 478 + A+ Sbjct: 467 LFKQAR 472 >gi|261251524|ref|ZP_05944098.1| deoxyribodipyrimidine photolyase [Vibrio orientalis CIP 102891] gi|260938397|gb|EEX94385.1| deoxyribodipyrimidine photolyase [Vibrio orientalis CIP 102891] Length = 475 Score = 429 bits (1104), Expect = e-118, Method: Compositional matrix adjust. Identities = 223/480 (46%), Positives = 294/480 (61%), Gaps = 19/480 (3%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 + +VWLR DLR+ DN AL A S V AV+IATP+ W++H ++ Q+ I+ LL + Sbjct: 1 MKIVWLRRDLRVDDNTALVEAVM-SGGSVAAVYIATPKTWQRHNMAPIQADLIFRRLLVL 59 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDK-LLEKRL 127 ++ LS K I Y + + D+ + L Q +++N QYE++E++RD+ L+ + L Sbjct: 60 KQELSAKNIPLYYAEVPTYRDAAQLLADVAQQSDAGSVYFNHQYEVDEIQRDRHLVNQLL 119 Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187 + C FDD +L PGS++N + YKV+TPF++A Q L Q + V + Sbjct: 120 DTNIECVGFDDKCVLSPGSVVNKQREYYKVFTPFKRAYCQRLYQTPISVKRVIEVGSVAE 179 Query: 188 VTPSNIPRF-----FDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGT 242 ++ + F F YP + F + +N + LR F EKV Y QRD P ++GT Sbjct: 180 LSSEKVTHFHPKVEFSYPRVTSERYF-VDTKNIIQKLRDFESEKVDAYALQRDFPEMEGT 238 Query: 243 SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKP---KSGAFSWLNELIWREFYRHLMAFYP 299 SQLSPYL+IG LS RQC RL L P G WL+EL+WREFY+HL+ F P Sbjct: 239 SQLSPYLAIGALSVRQCLIRL------LCNNPPPIAGGREVWLSELVWREFYQHLIYFEP 292 Query: 300 SVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITAS 359 + G F W + + W + ++AWK G TG+PI+DAAM QLN GWMHNRLRMI AS Sbjct: 293 KLSKGHSFTSWGDNLVWRNNPAEIEAWKLGRTGYPIVDAAMAQLNRTGWMHNRLRMIVAS 352 Query: 360 FLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFD 419 FLVKDL VDWRIGEEYFMS+L+DGD A+NNGGWQW ASTG D PYFR+FNPT QG++FD Sbjct: 353 FLVKDLHVDWRIGEEYFMSKLIDGDYAANNGGWQWCASTGCDGQPYFRVFNPTTQGEKFD 412 Query: 420 PQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479 + +FIR WLPEL VP +YIH P W N SL+YP PIVDHK TL Y AK+ Sbjct: 413 SEASFIRSWLPELEEVPDRYIHKPWCW--PNAKSLSYPTPIVDHKAEREITLALYKDAKE 470 >gi|330830812|ref|YP_004393764.1| deoxyribodipyrimidine photolyase [Aeromonas veronii B565] gi|328805948|gb|AEB51147.1| Deoxyribodipyrimidine photolyase [Aeromonas veronii B565] Length = 473 Score = 429 bits (1103), Expect = e-118, Method: Compositional matrix adjust. Identities = 219/478 (45%), Positives = 298/478 (62%), Gaps = 12/478 (2%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 + LVW RNDLR+ DN AL AC D V A+FI +P QWRQH ++ + F+ A + ++ Sbjct: 1 MKLVWFRNDLRLADNPALRHAC-AGDEPVAALFIISPTQWRQHKMAPIRQRFMLAQVDEL 59 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128 + L+ GI + F + L + C +Q VT+L+ N+ EI+E+RRD + L Sbjct: 60 GRELAALGIQLHLLRVETFAEVPAVLANLCREQGVTQLYANQAIEIDELRRDHAVSAALA 119 Query: 129 HRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG- 186 + + C F+ +LPPG +L + +M+KV+TPF +A +++L + P R Sbjct: 120 EQAVSCHWFNGCCVLPPGRVLTGSGEMFKVFTPFSRAWLKSLDEEGFVIHRAPTPRGEPL 179 Query: 187 PVTPSNIPRFFDYPFQ--AIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244 P P + D +DP +P+GE AL L F ++ V Y E RD PAI GTS Sbjct: 180 PWQPLAERAWVDEALGELTVDPRWPVGEAEALRRLNIFLEQAVLDYGETRDFPAIAGTSV 239 Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGA---FSWLNELIWREFYRHLMAFYPSV 301 LSPYL+ G++SPRQC L++ L +P+S A F WLNELIWREFYRHL+ P++ Sbjct: 240 LSPYLAAGIISPRQCVAVLQQR---LGYRPQSKAQPGFVWLNELIWREFYRHLLVLIPAL 296 Query: 302 CMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFL 361 M +PF P T + W+ D AW +G TG+PI+DAAMR LNT GWMHNRLRMI ASFL Sbjct: 297 SMNRPFKPETAALPWSWDPDAFAAWCEGRTGYPIVDAAMRCLNTTGWMHNRLRMIVASFL 356 Query: 362 VKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQ 421 KDL + WR+GE+YFMS+L+DGDLA+NNGGWQWAA TG D+ PYFR+FNPT QG+RFDPQ Sbjct: 357 TKDLHIHWRLGEDYFMSRLIDGDLAANNGGWQWAAGTGADAAPYFRVFNPTTQGQRFDPQ 416 Query: 422 GTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479 G FIR W+ EL ++P Y+H PH WL +YP+P+VDH A + + + +K Sbjct: 417 GEFIRTWVTELADIPPAYVHQPHDWLRLKGRQ-DYPVPMVDHAVARVRAIEMFRSLEK 473 >gi|254505847|ref|ZP_05117992.1| deoxyribodipyrimidine photo-lyase [Vibrio parahaemolyticus 16] gi|219551070|gb|EED28050.1| deoxyribodipyrimidine photo-lyase [Vibrio parahaemolyticus 16] Length = 465 Score = 429 bits (1102), Expect = e-118, Method: Compositional matrix adjust. Identities = 216/466 (46%), Positives = 296/466 (63%), Gaps = 12/466 (2%) Query: 18 LRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQKSLSQKGI 77 +R DN AL AA + + VIA F+ATP+ WR+H ++ Q+ I L++++ LS+ I Sbjct: 1 MRTIDNTALNAAIESGEP-VIAAFVATPDSWREHKMAPIQADLIKRRLVELKSELSELNI 59 Query: 78 VFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH-RVICKSF 136 Y + ++ S++ + S+ Q VT + N++YE+NEV RD E +L V + Sbjct: 60 PLIYSEAPDYSSSVDVVLSWVKQYGVTNVHVNKEYELNEVSRDDKAESKLSELGVPLHRY 119 Query: 137 DDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVP-AIRLTGPVTPSNIPR 195 DD PGS++N +KV+TP+++A +Q L Q ++ V A+ L + P +I + Sbjct: 120 DDKCHFAPGSVVNKQGHYFKVFTPYKRAYLQKLEQYPVQVQKVKGAVELGRELRPQDILQ 179 Query: 196 F---FDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIG 252 F YP + D ++P+ L +LR F E+ Y RD P+I+GTS+LS YL+IG Sbjct: 180 HDMTFSYPTECSD-VYPVKTTQILELLRAFVNERSDDYQADRDFPSIEGTSRLSLYLAIG 238 Query: 253 VLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTE 312 LS RQC RL + ++ G +WL+ELIWREFY+HL+ F P + G+ F+PW Sbjct: 239 ALSVRQCMARL---LYEQILPLSEGRQTWLSELIWREFYQHLIYFEPKLSRGESFLPWGR 295 Query: 313 KIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIG 372 + W D +QAWK+G TG+PI+DAAMRQLN GWMHNRLRMI ASFL+KDL VDWRIG Sbjct: 296 HLTWQNDEKRIQAWKEGMTGYPIVDAAMRQLNQTGWMHNRLRMIAASFLIKDLQVDWRIG 355 Query: 373 EEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPEL 432 E+YFMS+L+DG+ ++NNGGWQW ASTG D PYFRIFNPT QG+RFDP+G F+RHW+PEL Sbjct: 356 EDYFMSKLIDGEYSANNGGWQWCASTGCDGQPYFRIFNPTTQGERFDPKGDFVRHWVPEL 415 Query: 433 NNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478 NVP +YIH P W + +S YP PIVDHK TL Y AK Sbjct: 416 KNVPDKYIHQPSKWANAKGVS--YPSPIVDHKAQREITLANYKNAK 459 >gi|311087193|gb|ADP67273.1| deoxyribodipyrimidine photolyase [Buchnera aphidicola str. JF99 (Acyrthosiphon pisum)] Length = 483 Score = 428 bits (1100), Expect = e-117, Method: Compositional matrix adjust. Identities = 211/486 (43%), Positives = 303/486 (62%), Gaps = 28/486 (5%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M +L+W RNDLR+ DN AL+ AC N KVI++FI+TP+QW +S ++ F+Y L+ Sbjct: 1 MQKNLIWFRNDLRVHDNTALHQACQNDTDKVISLFISTPKQWHNQSVSKKKISFMYYHLI 60 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 +QK L + I+ YH+ ++F +SIE+L +C + +V LFYN +Y INE RD L++K+ Sbjct: 61 SLQKELLKLNIILYYHESTDFLNSIEYLIFFCKKHKVNNLFYNYEYAINERYRDYLVKKK 120 Query: 127 L-QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIR-- 183 L Q + K F D++L I N + YKV+T F+K +IQNL + PVP+ R Sbjct: 121 LSQKGFLVKGFHDNLLFSNRQIRNQKNETYKVFTFFKKKVIQNLHNNIPQCFPVPSKRKS 180 Query: 184 ----LTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAI 239 ++ N+ F+ F FP+GE+ A++ L+ FC K Y +RD P + Sbjct: 181 DRDIFLTSISLKNVNLNFNKSF------FPVGEKEAINRLKNFCIYKFNDYFLKRDYPFL 234 Query: 240 QGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSG-------AFSWLNELIWREFYR 292 TS LSPYLS G++S R C + +L+K K+ W ++++WREFY Sbjct: 235 DATSMLSPYLSAGIISSRYC--------LKVLLKTKNSLPLNVLLTSPWFDQILWREFYY 286 Query: 293 HLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNR 352 HL+ +P + + + W ++I W + AWK+G TGFPIIDA MRQLN +GWMHNR Sbjct: 287 HLLIGFPKISRSESLVTWEKEIHWINNIKHFNAWKEGNTGFPIIDAGMRQLNELGWMHNR 346 Query: 353 LRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPT 412 LRMIT+SFLVK+LL++WR GEEYF+S L+DGDLA NNGGWQW+AS G DSVPY RIFNP Sbjct: 347 LRMITSSFLVKNLLINWREGEEYFISNLIDGDLALNNGGWQWSASVGCDSVPYIRIFNPL 406 Query: 413 IQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLN 472 Q K FD G FI+ ++PEL NVP +IH PH W + + ++YP PI+++ ++ +L+ Sbjct: 407 HQSKTFDESGNFIKKFIPELKNVPNHHIHQPHEWSKQKNFKIDYPNPIINYSESRKTSLS 466 Query: 473 QYYAAK 478 + A+ Sbjct: 467 LFKQAR 472 >gi|323228026|gb|EGA12170.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp. enterica serovar Montevideo str. MB110209-0055] Length = 387 Score = 427 bits (1097), Expect = e-117, Method: Compositional matrix adjust. Identities = 206/391 (52%), Positives = 275/391 (70%), Gaps = 6/391 (1%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M HLVW R DLR+ DN AL AAC ++ A+V+A++I+TP QW+ H ++ RQ+ FI A L Sbjct: 1 MPTHLVWFRRDLRLQDNLALAAACRDASARVLALYISTPAQWQAHDMAPRQAAFISAQLN 60 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 +Q +L++KGI +H+ ++F SIE + + C Q V+ LFYN QYE NE +RD +EK Sbjct: 61 ALQTALAEKGIPLLFHEVADFSASIETVKNVCRQHDVSHLFYNYQYEFNERQRDAAVEKT 120 Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 L VIC+ FDDSV+L PG+++ +MYKV+TPF+ A ++ L + +P P IR++G Sbjct: 121 LPS-VICEGFDDSVILAPGAVMTGNHEMYKVFTPFKNAWLKRLKEDIPPCVPAPKIRVSG 179 Query: 187 PVTPSNIPRFFDYPFQAIDP-MFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245 ++ P +YP QA D +FP+ E + LR+FC + Y +RD PA+ GTS+L Sbjct: 180 ALSTPLTPVSLNYPQQAFDAALFPVEENAVIAQLRQFCAQGADEYESRRDFPAVDGTSRL 239 Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFS-WLNELIWREFYRHLMAFYPSVCMG 304 S L+ G LSPRQC +RL E L G S WLNELIWREFYRHLM +YP++C Sbjct: 240 SASLATGGLSPRQCLHRLLAEQPQAL---DGGPGSVWLNELIWREFYRHLMIWYPALCKH 296 Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364 +PFI WT+++ W ++SH QAW++G TG+PI+DAAMRQLN GWMHNRLRMITASFLVKD Sbjct: 297 QPFIRWTKRVAWQENSHDFQAWQKGETGYPIVDAAMRQLNATGWMHNRLRMITASFLVKD 356 Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWA 395 LL+DWR+GE YFMSQL+DGDLA+NNGGWQWA Sbjct: 357 LLIDWRLGERYFMSQLIDGDLAANNGGWQWA 387 >gi|311087720|gb|ADP67799.1| deoxyribodipyrimidine photolyase [Buchnera aphidicola str. JF98 (Acyrthosiphon pisum)] Length = 483 Score = 426 bits (1095), Expect = e-117, Method: Compositional matrix adjust. Identities = 210/486 (43%), Positives = 303/486 (62%), Gaps = 28/486 (5%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M +L+W RNDLR+ DN AL+ AC N KVI++FI+TP+QW +S ++ F+Y L+ Sbjct: 1 MQKNLIWFRNDLRVHDNTALHQACQNDTDKVISLFISTPKQWHNQSVSKKKISFMYYHLI 60 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 +QK L + I+ YH+ ++F +SIE+L +C + +V LFYN +Y INE RD L++K+ Sbjct: 61 SLQKELLKLNIILYYHESTDFLNSIEYLIFFCKKHKVNNLFYNYEYAINERYRDYLVKKK 120 Query: 127 L-QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIR-- 183 L Q + K F D++L I N + YKV+T F+K +IQNL + PVP+ R Sbjct: 121 LSQKGFLVKGFHDNLLFSNRQIRNQKNETYKVFTFFKKKVIQNLHNNIPQCFPVPSKRKS 180 Query: 184 ----LTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAI 239 ++ N+ F+ F FP+GE+ A++ L+ FC K Y +RD P + Sbjct: 181 DRDIFLTSISLKNVNLNFNKSF------FPVGEKEAINRLKNFCIYKFNDYFLKRDYPFL 234 Query: 240 QGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSG-------AFSWLNELIWREFYR 292 TS LSPYLS G++S R C + +L+K K+ W ++++WREFY Sbjct: 235 DATSMLSPYLSAGIISSRYC--------LKVLLKTKNSLPLNVLLTSPWFDQILWREFYY 286 Query: 293 HLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNR 352 HL+ +P + + + W ++I W + AWK+G TGFPIIDA MRQLN +GWMHNR Sbjct: 287 HLLIGFPKISRSESLVTWEKEIHWINNIKHFNAWKEGNTGFPIIDAGMRQLNELGWMHNR 346 Query: 353 LRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPT 412 LRMIT+SFLVK+LL++WR GE+YF+S L+DGDLA NNGGWQW+AS G DSVPY RIFNP Sbjct: 347 LRMITSSFLVKNLLINWREGEKYFISNLIDGDLALNNGGWQWSASVGCDSVPYIRIFNPL 406 Query: 413 IQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLN 472 Q K FD G FI+ ++PEL NVP +IH PH W + + ++YP PI+++ ++ +L+ Sbjct: 407 HQSKTFDESGNFIKKFIPELKNVPNHHIHQPHEWSKQKNFKIDYPNPIINYSESRKTSLS 466 Query: 473 QYYAAK 478 + A+ Sbjct: 467 LFKQAR 472 >gi|15616910|ref|NP_240123.1| deoxyribodipyrimidine photolyase [Buchnera aphidicola str. APS (Acyrthosiphon pisum)] gi|11133758|sp|P57386|PHR_BUCAI RecName: Full=Deoxyribodipyrimidine photo-lyase; AltName: Full=DNA photolyase; AltName: Full=Photoreactivating enzyme gi|25291445|pir||A84965 deoxyribodipyrimidine photo-lyase (EC 4.1.99.3) [imported] - Buchnera sp. (strain APS) gi|10038974|dbj|BAB13009.1| deoxyribodipyrimidine photolyase [Buchnera aphidicola str. APS (Acyrthosiphon pisum)] Length = 483 Score = 425 bits (1093), Expect = e-117, Method: Compositional matrix adjust. Identities = 210/486 (43%), Positives = 303/486 (62%), Gaps = 28/486 (5%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M +L+W RNDLR+ DN AL+ AC N KVI++FI+TP+QW +S ++ F+Y L+ Sbjct: 1 MQKNLIWFRNDLRVYDNTALHQACQNDTDKVISLFISTPKQWHNQSVSKKKISFMYYHLI 60 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 +QK L + I+ YH+ ++F +SIE+L +C + +V LFYN +Y INE RD L++K+ Sbjct: 61 SLQKELLKLNIILYYHESTDFLNSIEYLIFFCKKHKVNNLFYNYEYAINERYRDYLVKKK 120 Query: 127 L-QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIR-- 183 L Q + K F D++L I N + YKV+T F+K +IQNL + PVP+ R Sbjct: 121 LSQKGFLVKGFHDNLLFSNRQIRNQKNETYKVFTFFKKKVIQNLHNNIPQCFPVPSKRKS 180 Query: 184 ----LTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAI 239 ++ N+ F+ F FP+GE+ A++ L+ FC K Y +RD P + Sbjct: 181 DRDIFLTSISLKNVNLNFNKNF------FPVGEKEAINRLKNFCIYKFNDYFLKRDYPFL 234 Query: 240 QGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSG-------AFSWLNELIWREFYR 292 TS LSPYLS G++S R C + +L+K K+ W ++++WREFY Sbjct: 235 DATSMLSPYLSAGIISSRYC--------LKVLLKTKNSLPLNVLLTSPWFDQILWREFYY 286 Query: 293 HLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNR 352 HL+ +P + + + W ++I W + AWK+G TGFPIIDA MRQLN +GWMHNR Sbjct: 287 HLLIGFPKISRSESLVTWEKEIHWINNIKHFNAWKEGNTGFPIIDAGMRQLNELGWMHNR 346 Query: 353 LRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPT 412 LRMIT+SFLVK+LL++WR GEE+F+S L+DGDLA NNGGWQW+AS G DSVPY RIFNP Sbjct: 347 LRMITSSFLVKNLLINWREGEEHFISNLIDGDLALNNGGWQWSASVGCDSVPYIRIFNPL 406 Query: 413 IQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLN 472 Q K FD G FI+ ++PEL NVP +IH PH W + + ++YP PI+++ ++ +L+ Sbjct: 407 HQSKTFDESGNFIKKFIPELKNVPNHHIHQPHEWSKQKNFKIDYPNPIINYSESRKTSLS 466 Query: 473 QYYAAK 478 + A+ Sbjct: 467 LFKQAR 472 >gi|219681664|ref|YP_002468050.1| deoxyribodipyrimidine photolyase [Buchnera aphidicola str. 5A (Acyrthosiphon pisum)] gi|257471353|ref|ZP_05635352.1| deoxyribodipyrimidine photolyase [Buchnera aphidicola str. LSR1 (Acyrthosiphon pisum)] gi|219624507|gb|ACL30662.1| deoxyribodipyrimidine photolyase [Buchnera aphidicola str. 5A (Acyrthosiphon pisum)] Length = 483 Score = 425 bits (1092), Expect = e-117, Method: Compositional matrix adjust. Identities = 210/486 (43%), Positives = 302/486 (62%), Gaps = 28/486 (5%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M +L+W RNDLR+ DN AL+ AC N KVI++FI+TP+QW +S ++ F+Y L+ Sbjct: 1 MQKNLIWFRNDLRVHDNTALHQACQNDTDKVISLFISTPKQWHNQSVSKKKISFMYYHLI 60 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 +QK L + I+ YH+ ++F +SIE+L +C + +V LFYN +Y INE RD L++K+ Sbjct: 61 SLQKELLKLNIILYYHESTDFLNSIEYLIFFCKKHKVNNLFYNYEYAINERYRDYLVKKK 120 Query: 127 L-QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIR-- 183 L Q + K F D++L I N + YKV+T F+K +IQNL + PVP+ R Sbjct: 121 LSQKGFLVKGFHDNLLFSNRQIRNQKNETYKVFTFFKKKVIQNLHNNIPQCFPVPSKRKS 180 Query: 184 ----LTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAI 239 ++ N+ F+ F FP+GE+ A++ L+ FC K Y +RD P + Sbjct: 181 DRDIFLTSISLKNVNLNFNKNF------FPVGEKEAINRLKNFCIYKFNDYFLKRDYPFL 234 Query: 240 QGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSG-------AFSWLNELIWREFYR 292 TS LSPYLS G++S R C + +L+K K+ W ++++WREFY Sbjct: 235 DATSMLSPYLSAGIISSRYC--------LKVLLKTKNSLPLNVLLTSPWFDQILWREFYY 286 Query: 293 HLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNR 352 HL+ +P + + + W ++I W + AWK+G TGFPIIDA MRQLN +GWMHNR Sbjct: 287 HLLIGFPKIGRSESLVTWEKEIHWINNIKHFNAWKEGNTGFPIIDAGMRQLNELGWMHNR 346 Query: 353 LRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPT 412 LRMIT+SFLVK+LL++WR GEEYF+S L+DGDLA NNGGWQW+AS G DS PY RIFNP Sbjct: 347 LRMITSSFLVKNLLINWREGEEYFISNLIDGDLALNNGGWQWSASVGCDSAPYIRIFNPL 406 Query: 413 IQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLN 472 Q K FD G FI+ ++PEL NVP +IH PH W + + ++YP PI+++ ++ +L+ Sbjct: 407 HQSKTFDESGNFIKKFIPELKNVPNHHIHQPHEWSKQKNFKIDYPNPIINYSESRKTSLS 466 Query: 473 QYYAAK 478 + A+ Sbjct: 467 LFKQAR 472 >gi|323496501|ref|ZP_08101559.1| deoxyribodipyrimidine photolyase [Vibrio sinaloensis DSM 21326] gi|323318778|gb|EGA71731.1| deoxyribodipyrimidine photolyase [Vibrio sinaloensis DSM 21326] Length = 474 Score = 422 bits (1085), Expect = e-116, Method: Compositional matrix adjust. Identities = 221/475 (46%), Positives = 294/475 (61%), Gaps = 12/475 (2%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 + LVW R DLR DN A AA NS+ V+A FIATP+ W QH ++ Q+ I L ++ Sbjct: 1 MRLVWFRRDLRTIDNTAFIAAI-NSNEPVVAAFIATPDSWSQHHMAPMQADLIKRRLFEL 59 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128 Q L+ G+ Y + S++ S++ + ++ Q VT + N++YEINEVRRD E+ L Sbjct: 60 QNDLASLGVPLIYAETSDYASSVDVVCNWVKQYSVTSVHLNKEYEINEVRRDDKAEQALT 119 Query: 129 H-RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIR-LTG 186 V+ DD PGS++N +KV+TP+++A +Q L Q ++ V A+ Sbjct: 120 RLDVVLHRHDDKCQFIPGSVVNKQGHYFKVFTPYKRAYLQKLEQFPVQVQKVTAVNGQKA 179 Query: 187 PVTPSNI---PRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS 243 V ++ F YP + + + + L LR F KE Y ++RD PAI+GTS Sbjct: 180 KVDECDLFSKDCSFRYPTEE-SQAYQVSTEQILDQLRSFVKEHSDDYQDERDFPAIEGTS 238 Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCM 303 +LSPYL+IG LS RQC RL + L G +WL+ELIWREFY+HL+ F P + Sbjct: 239 RLSPYLAIGALSVRQCMARLLYQQTAPL---SEGRQTWLSELIWREFYQHLLYFEPKLSR 295 Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363 G+ F+PW + W ++AW+QG TG+PI+DAAMRQLN GWMHNRLRMI ASFLVK Sbjct: 296 GESFLPWGVHLRWENCPRRIKAWQQGQTGYPIVDAAMRQLNQTGWMHNRLRMIVASFLVK 355 Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423 DL VDWR+GE+YFMS+L+DG+ A+NNGGWQW ASTG D PYFRIFNPT QG+RFDP+G Sbjct: 356 DLQVDWRVGEDYFMSKLVDGEYAANNGGWQWCASTGCDGQPYFRIFNPTTQGERFDPKGE 415 Query: 424 FIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478 F+R W+PEL ++P + IH P WL S YP PIVDHK TL Y AK Sbjct: 416 FVRRWVPELADLPDKQIHQPSKWLSVKGSS--YPAPIVDHKVQREITLANYKNAK 468 >gi|117618175|ref|YP_855643.1| deoxyribodipyrimidine photolyase [Aeromonas hydrophila subsp. hydrophila ATCC 7966] gi|117559582|gb|ABK36530.1| deoxyribodipyrimidine photolyase [Aeromonas hydrophila subsp. hydrophila ATCC 7966] Length = 473 Score = 420 bits (1080), Expect = e-115, Method: Compositional matrix adjust. Identities = 217/478 (45%), Positives = 292/478 (61%), Gaps = 12/478 (2%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 + L+W RNDLR+ DN AL AC D V A+FI +P QWRQH ++ + F+ A + + Sbjct: 1 MKLIWFRNDLRLADNPALRHAC-AGDEPVAALFILSPSQWRQHKLAPIRQRFLLAQVDVL 59 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128 + L+ GI + F + L C + VT+L+ N+ EI+E+RRD+ + L Sbjct: 60 GRELAALGIPLHLLRVETFSEVPAALAELCRELGVTQLYANQAIEIDELRRDQAVSAALA 119 Query: 129 HRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG- 186 + + C + +LPPG +L + +M+KV+TPF +A ++ L + PA R Sbjct: 120 EQTVGCHWLNGCCVLPPGRVLTGSGEMFKVFTPFSRAWLKALDEDGFVIHRPPAPRGEPL 179 Query: 187 PVTPSNIPRFFDYPFQAI--DPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244 P P F D + DP +P+GE A L F ++ V Y E RD PAI GTS Sbjct: 180 PWQPLAERHFVDAALGELTADPRWPVGEAEASRRLNDFLEQAVLDYGETRDFPAIAGTSV 239 Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGA---FSWLNELIWREFYRHLMAFYPSV 301 LSPYL+ G++SPRQC L++ L +P+S A F WLNELIWREFYRHL+ P++ Sbjct: 240 LSPYLAAGIISPRQCVAALQQR---LGYRPQSKAQPGFVWLNELIWREFYRHLLVQIPTL 296 Query: 302 CMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFL 361 M +PF P T + W+ D AW +G TG+PI+DAAMR LN GWMHNRLRMI ASFL Sbjct: 297 SMNRPFKPETAALPWSWDPDAFAAWCEGRTGYPIVDAAMRCLNATGWMHNRLRMIVASFL 356 Query: 362 VKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQ 421 KDL + WR+GE+YFMS+L+DGDLA+NNGGWQWAA TG D+ PYFR+FNPT QG+RFDPQ Sbjct: 357 TKDLHIHWRLGEDYFMSRLIDGDLAANNGGWQWAAGTGADAAPYFRVFNPTTQGQRFDPQ 416 Query: 422 GTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479 G FIR W+ EL ++P Y+H PH WL +YP P+VDH A + + A +K Sbjct: 417 GEFIRTWVSELADLPAAYLHQPHDWLRLKGRH-DYPAPMVDHAVARVRAIEMFRALEK 473 >gi|237807886|ref|YP_002892326.1| Deoxyribodipyrimidine photo-lyase [Tolumonas auensis DSM 9187] gi|237500147|gb|ACQ92740.1| Deoxyribodipyrimidine photo-lyase [Tolumonas auensis DSM 9187] Length = 465 Score = 418 bits (1074), Expect = e-114, Method: Compositional matrix adjust. Identities = 213/457 (46%), Positives = 290/457 (63%), Gaps = 6/457 (1%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 LVW R+DLR+ D+ ALYAA + + + A++ TPEQW++ ++ ++ I L Q+ + Sbjct: 4 LVWFRDDLRVHDHPALYAASLHPE-PLQAIYFVTPEQWKKQDLAPVRADLIARQLNQLGE 62 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130 +L+ GI F +++ L SYC Q V++LF NR I E+ RD ++++ Sbjct: 63 ALAALGIPFSVLTVADYQQIPARLASYCQQHEVSQLFVNRDIGIYELARDLSVQQQCDAT 122 Query: 131 VI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189 I + FD + PGS+L + +M+KV+TPF KA ++ L + P P+ R G ++ Sbjct: 123 GIRVQWFDARCVFAPGSVLTGSKEMFKVFTPFSKAWLKKLAAEGYQVWPKPSAR-GGILS 181 Query: 190 PSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYL 249 S++ DYP + +P+GE L L+ FC EK+ Y EQRD PA GTS++SPYL Sbjct: 182 WSSVS--IDYP-RVDSSDWPVGEAAVLQQLQDFCAEKLRQYDEQRDFPACPGTSRISPYL 238 Query: 250 SIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIP 309 ++G++S RQC ++ L + + F WLNELIWREFY+HL+ +P V K F P Sbjct: 239 TLGIISVRQCLAAIEAALGQLPFERGAPGFVWLNELIWREFYQHLLVAFPHVSKHKAFKP 298 Query: 310 WTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDW 369 T+ I W D AW +G TG+PI+DAAMR LN GWMHNRLRMI ASFL KDL +DW Sbjct: 299 ETDHIRWLWDDARFTAWCEGKTGYPIVDAAMRCLNQTGWMHNRLRMIVASFLTKDLHIDW 358 Query: 370 RIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWL 429 R+GE YFM L+DG+LA+NNGGWQWAASTG D+ PYFRIFNPT QG+RFD QG FI+ WL Sbjct: 359 RLGERYFMQHLIDGELAANNGGWQWAASTGADAAPYFRIFNPTTQGQRFDEQGQFIKQWL 418 Query: 430 PELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKA 466 PEL VP +YIH PH WL D +YP PIVDH ++ Sbjct: 419 PELELVPAKYIHTPHDWLKVFDPQDSYPAPIVDHSES 455 >gi|260769655|ref|ZP_05878588.1| deoxyribodipyrimidine photolyase [Vibrio furnissii CIP 102972] gi|260614993|gb|EEX40179.1| deoxyribodipyrimidine photolyase [Vibrio furnissii CIP 102972] Length = 475 Score = 417 bits (1071), Expect = e-114, Method: Compositional matrix adjust. Identities = 220/482 (45%), Positives = 286/482 (59%), Gaps = 26/482 (5%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 + LVWLR DLR DN AL A SD V A+F+ATP QW+QH ++ Q+ FI+ L + Sbjct: 1 MKLVWLRRDLRSVDNTALNEAL-ASDEAVCALFVATPTQWQQHDMAPMQADFIHRRLFVL 59 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL- 127 Q L+ + Y + + F ++++ + ++ NR YE+NE +RD +RL Sbjct: 60 QTELAALNVPLLYREVATFTEAVDAVTEVASALHANQVLANRDYELNEQQRDAQAAERLH 119 Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187 Q + +SFDD ++PPGS+ N +KV+TPF++A L P I+ + Sbjct: 120 QQGIEWQSFDDKCVMPPGSLRNKQGDYFKVFTPFKRAW--------LTQFSPPRIQASRA 171 Query: 188 VTPSNIPRF-----------FDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDI 236 P ++P F +P + D +P+ LR FC+E++ Y +QRD Sbjct: 172 AKPWSLPEALQSLLWCEAQPFTHPRVSSD-AWPVDFDTIRRRLRAFCQEQLDDYKQQRDF 230 Query: 237 PAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMA 296 PA GTS LSPYL+IG LSPRQC R+ E + GA +WL+ELIWREFY+HL+ Sbjct: 231 PAQDGTSSLSPYLAIGALSPRQCIARVYAE--SAMGALSDGAQTWLSELIWREFYQHLLT 288 Query: 297 FYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMI 356 F P + K F+ W ++ W D W +G TG+PI+DAAMRQLN GWMHNRLRMI Sbjct: 289 FEPKLSKSKDFLAWGARLTWWTDEAKFARWCEGNTGYPIVDAAMRQLNQTGWMHNRLRMI 348 Query: 357 TASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGK 416 ASFL KDL +DWR GE YFM L+DGD A+NNGGWQW ASTG D PYFRIFNPT QG+ Sbjct: 349 VASFLTKDLHIDWRWGERYFMQHLVDGDYAANNGGWQWCASTGCDGQPYFRIFNPTTQGE 408 Query: 417 RFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYA 476 +FDPQG FIR W+PEL VP +IHAP +W N SL YP PIVDHK TL Y Sbjct: 409 KFDPQGRFIRQWVPELATVPEAHIHAPSNWGGVN--SLLYPQPIVDHKAEREVTLRLYKE 466 Query: 477 AK 478 AK Sbjct: 467 AK 468 >gi|315182348|gb|ADT89261.1| deoxyribodipyrimidine photolyase, cyclobutane pyrimidine dimer-specific [Vibrio furnissii NCTC 11218] Length = 475 Score = 416 bits (1069), Expect = e-114, Method: Compositional matrix adjust. Identities = 220/482 (45%), Positives = 285/482 (59%), Gaps = 26/482 (5%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 + LVWLR DLR DN AL A SD V A+F+ATP QW+QH ++ Q+ FI+ L + Sbjct: 1 MKLVWLRRDLRSVDNTALNEAL-ASDEAVCALFVATPTQWQQHDMAPMQADFIHRRLFAL 59 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL- 127 Q L+ + Y + F ++++ + ++ NR YE+NE +RD +RL Sbjct: 60 QTELAALNVPLLYREVVTFTEAVDAVTEVASALHANQVLANRDYELNEQQRDAQAAERLH 119 Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187 Q + +SFDD ++PPGS+ N +KV+TPF++A L P I+ + Sbjct: 120 QQGIEWQSFDDKCVMPPGSVRNKQGDYFKVFTPFKRAW--------LTQFSPPRIQASRA 171 Query: 188 VTPSNIPRF-----------FDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDI 236 P ++P F +P + D +P+ LR FC+E++ Y +QRD Sbjct: 172 AKPWSLPEALQSLLWCESQPFTHPRVSSD-AWPVDFDTIRGRLRAFCQEQLDDYKQQRDF 230 Query: 237 PAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMA 296 PA GTS LSPYL+IG LSPRQC R+ E + GA +WL+ELIWREFY+HL+ Sbjct: 231 PAQDGTSSLSPYLAIGALSPRQCIARVYAE--SAMGALSDGAQTWLSELIWREFYQHLLT 288 Query: 297 FYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMI 356 F P + K F+ W ++ W D W +G TG+PI+DAAMRQLN GWMHNRLRMI Sbjct: 289 FEPKLSKSKDFLAWGARLTWWTDEAKFARWCEGNTGYPIVDAAMRQLNQTGWMHNRLRMI 348 Query: 357 TASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGK 416 ASFL KDL +DWR GE YFM L+DGD A+NNGGWQW ASTG D PYFRIFNPT QG+ Sbjct: 349 VASFLTKDLHIDWRWGERYFMQHLVDGDYAANNGGWQWCASTGCDGQPYFRIFNPTTQGE 408 Query: 417 RFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYA 476 +FDPQG FIR W+PEL VP +IHAP +W N SL YP PIVDHK TL Y Sbjct: 409 KFDPQGRFIRQWVPELATVPEAHIHAPSNWGGVN--SLLYPQPIVDHKAEREVTLRLYKE 466 Query: 477 AK 478 AK Sbjct: 467 AK 468 >gi|312883049|ref|ZP_07742780.1| deoxyribodipyrimidine photolyase [Vibrio caribbenthicus ATCC BAA-2122] gi|309369209|gb|EFP96730.1| deoxyribodipyrimidine photolyase [Vibrio caribbenthicus ATCC BAA-2122] Length = 476 Score = 414 bits (1065), Expect = e-113, Method: Compositional matrix adjust. Identities = 209/479 (43%), Positives = 286/479 (59%), Gaps = 12/479 (2%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 +++VW R DLR+ DN AL AC + + V+ V+ ATP+ W +H +SA Q+ IY L + Sbjct: 1 MNVVWFRRDLRVEDNTALIEACQSGEP-VVGVYFATPKTWERHSLSAIQADLIYRRLFAL 59 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128 Q L + I Y + ++ D +E + + LF+N+QYE +EV+RD + + L+ Sbjct: 60 QDDLRKLNIPLYYAEVDSYKDCVELIADVMTSSSASGLFFNKQYEFDEVQRDSAIVQLLK 119 Query: 129 H-RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187 V C + +D LPPGS+LN +KV+TPF++A +Q + L + T P Sbjct: 120 ESNVDCSAHEDKCFLPPGSVLNKQGGYFKVFTPFKRAYLQQMEVTPLNVIKAKKQSNTLP 179 Query: 188 VTPSNIPRFF--DYPF---QAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGT 242 + R F D PF + + + + LR+F ++KV Y E RD P++ T Sbjct: 180 TLDNTRLRLFSQDSPFSYPRVSSNNYKVETTEVIQALREFEEKKVKLYAENRDYPSVDAT 239 Query: 243 SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVC 302 S LSPYL++G+LS RQC R+ + G W +ELIWREFY+HL F P + Sbjct: 240 SILSPYLAVGILSIRQCMARV---MYQQQLPLSGGREVWQSELIWREFYQHLAYFEPKLS 296 Query: 303 MGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLV 362 G+ F PW E + W L+AWK G TG+PI+DAAM+QLN GWMHNRLRMI ASFL+ Sbjct: 297 KGESFNPWGEHLRWENSQVFLEAWKSGKTGYPIVDAAMKQLNETGWMHNRLRMIVASFLI 356 Query: 363 KDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQG 422 KDL +DWR+GE+YFMS+L+DGD +NNGGWQW +STG D PYFRIFNP QG+RFDP G Sbjct: 357 KDLHIDWRVGEQYFMSKLVDGDYPANNGGWQWCSSTGCDGQPYFRIFNPITQGERFDPDG 416 Query: 423 TFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481 FI WLP+L VP +++H P W + L YP PIVDHK TL+ Y AK+ S Sbjct: 417 RFIIRWLPQLAEVPKKFLHQPWKWSRAS--QLKYPAPIVDHKVQRGITLDLYKQAKEYS 473 >gi|260776993|ref|ZP_05885887.1| deoxyribodipyrimidine photolyase [Vibrio coralliilyticus ATCC BAA-450] gi|260606659|gb|EEX32933.1| deoxyribodipyrimidine photolyase [Vibrio coralliilyticus ATCC BAA-450] Length = 471 Score = 413 bits (1061), Expect = e-113, Method: Compositional matrix adjust. Identities = 218/482 (45%), Positives = 281/482 (58%), Gaps = 25/482 (5%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 ++LVWLR DLRI DN AL A + V+ ++ ATPE W +HG++ Q+ IY L + Sbjct: 1 MNLVWLRRDLRIEDNSALVNAVETGEP-VVCIYTATPETWHEHGLAPIQADLIYRRLQGL 59 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128 ++ L I Y + + +S + + ++ N++YE+NE RRD LE L Sbjct: 60 KQDLESLRIPLLYEEVDTYTESAKRVAEIATLLSANRVLVNKEYEVNEQRRDATLEMCLN 119 Query: 129 HRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187 I KS DD + PGSI+N +KV+TPF+KA + L + + +R Sbjct: 120 DTAIQVKSSDDKCIFAPGSIVNKQGSYFKVFTPFKKAYLAELGECSFQ------VRKPQV 173 Query: 188 VTPSNIPRF-----------FDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDI 236 S +P F YP + D F Q+ + LR F + V Y RD Sbjct: 174 ACSSRLPEHLSSLLFADDVTFSYPREPSD-QFAADTQSIIQTLRDFDSQDVEGYASNRDF 232 Query: 237 PAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMA 296 PAI GTSQLSPYL+IG LS RQC RL L G W +ELIWREFY+HL+ Sbjct: 233 PAIAGTSQLSPYLAIGALSVRQCMARLMFGQAPPL---SQGREVWQSELIWREFYQHLIY 289 Query: 297 FYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMI 356 F + G+ F+ W +++ W + ++AWKQG TGFPI+DAAM+QLN GWMHNRLRMI Sbjct: 290 FEAKLSKGRSFVDWGDRLVWKNEPQYIEAWKQGETGFPIVDAAMKQLNQTGWMHNRLRMI 349 Query: 357 TASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGK 416 ASFLVKDL VDWR+GE YF+++L+DGD A+NNGGWQW ASTG D PYFRIFNP QG+ Sbjct: 350 VASFLVKDLHVDWRVGERYFINKLIDGDYAANNGGWQWCASTGCDGQPYFRIFNPITQGE 409 Query: 417 RFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYA 476 RFDPQG F+R WLPEL VP +Y+H P W SL+YP PIVDHK TL Y Sbjct: 410 RFDPQGEFVRQWLPELAQVPDKYLHQPWKW--SGVRSLSYPPPIVDHKVEREVTLRLYKE 467 Query: 477 AK 478 AK Sbjct: 468 AK 469 >gi|261213071|ref|ZP_05927355.1| deoxyribodipyrimidine photolyase [Vibrio sp. RC341] gi|260838136|gb|EEX64813.1| deoxyribodipyrimidine photolyase [Vibrio sp. RC341] Length = 469 Score = 412 bits (1058), Expect = e-113, Method: Compositional matrix adjust. Identities = 222/479 (46%), Positives = 298/479 (62%), Gaps = 20/479 (4%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 + LVW R DLR DN AL AA + + V+AV+IATP QW+QH ++ Q+ FI+ L ++ Sbjct: 1 MKLVWFRRDLRSFDNTALSAAIASGE-PVVAVYIATPAQWQQHHVAPIQADFIWRRLGEL 59 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128 Q+ L+ + Y Q ++F + E + + T++F NR YE++E +RD+ E L Sbjct: 60 QQELAALNVPLLYQQVADFKAAAEAVSQLASKLNATQVFANRDYELDEQQRDRHTELLLD 119 Query: 129 HRVIC-KSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187 R I +FDD LLPPG + + +KV+TPF++A + +L Q + + PA P Sbjct: 120 ERGISWATFDDKCLLPPGCVRTKQGEHFKVFTPFKRAWL-SLFQPPIITKNQPA----EP 174 Query: 188 VTPS--------NIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAI 239 T S N + FDYP + +P+ + + LR FC+++V Y +QRD PA Sbjct: 175 WTLSSEWASWVWNSAQTFDYP-RVDSQSWPVDFETIRNQLRDFCRDQVQNYHQQRDFPAR 233 Query: 240 QGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYP 299 +GTS LSPYL+IG LS RQC RL E + GA WL+ELIWREFY+HL+A P Sbjct: 234 EGTSVLSPYLAIGALSARQCVARLYRE--SSMGALSEGAQVWLSELIWREFYQHLVAIEP 291 Query: 300 SVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITAS 359 ++ + F W ++EW D+ Q W +G TG+PI+DAAMRQLN GWMHNRLRMI AS Sbjct: 292 NISKSRDFHEWGSRLEWWDDNEKFQRWCEGTTGYPIVDAAMRQLNQTGWMHNRLRMIVAS 351 Query: 360 FLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFD 419 FL KDL +DWR GE YFMS+L+DGD A+NNGGWQW ASTG D PYFRIFNP QG++FD Sbjct: 352 FLTKDLHIDWRWGERYFMSKLIDGDYAANNGGWQWCASTGCDGQPYFRIFNPVSQGEKFD 411 Query: 420 PQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478 PQG FIRHW+PEL ++ YIH P ++ N S+ YP +VDHK+ TL Y AK Sbjct: 412 PQGEFIRHWVPELRSMSAAYIHQPWTYPAVN--SVPYPARLVDHKQEREVTLRLYKTAK 468 >gi|238757988|ref|ZP_04619169.1| Deoxyribodipyrimidine photo-lyase [Yersinia aldovae ATCC 35236] gi|238703742|gb|EEP96278.1| Deoxyribodipyrimidine photo-lyase [Yersinia aldovae ATCC 35236] Length = 362 Score = 411 bits (1057), Expect = e-112, Method: Compositional matrix adjust. Identities = 200/361 (55%), Positives = 250/361 (69%), Gaps = 6/361 (1%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M+ HLVW RNDLRITDN AL AAC + A+VIA+FIATP+QW H ++ RQ+ F+ +L Sbjct: 1 MATHLVWFRNDLRITDNLALNAACQDPQARVIALFIATPKQWAAHDMAPRQAAFLQQNLQ 60 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 +Q +L+ K I YHQC +F D++ WLD++C QQ+V LFYN+QYE+NE RRD+ L R Sbjct: 61 LLQSALAAKSIALHYHQCDDFQDAVIWLDNFCQQQQVDALFYNQQYELNERRRDEALAVR 120 Query: 127 LQ-----HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPA 181 L + C F DS+LLPPGS+L +MYKV+TPFR+A IQ L+ +D +P P Sbjct: 121 LNSGANGRNITCHRFHDSLLLPPGSVLTGNNEMYKVFTPFRRAFIQRLLMSDNACVPAPI 180 Query: 182 IRLTGPVTPSNIPRFFDYPFQAIDP-MFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ 240 R S P FDYP Q +DP +FP GE AL LR FC+E+V Y +QRD PA+ Sbjct: 181 ARDNMAAATSFPPLLFDYPQQPVDPILFPAGEDAALQRLRSFCREQVQDYHQQRDFPAVS 240 Query: 241 GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPS 300 GTS LSPYL++GVLSPRQC+NRL+ E L P SGAF+WLNELIWREFY HL+ YP Sbjct: 241 GTSCLSPYLALGVLSPRQCFNRLRAECPAGLENPDSGAFTWLNELIWREFYCHLLVAYPR 300 Query: 301 VCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASF 360 +C PFI WT+ + WN L AW+QG TG+PI+DAAMRQLN GWMHNRLRMI+ASF Sbjct: 301 LCQHHPFIGWTDAVIWNHSELQLTAWQQGRTGYPIVDAAMRQLNETGWMHNRLRMISASF 360 Query: 361 L 361 Sbjct: 361 F 361 >gi|260774030|ref|ZP_05882945.1| deoxyribodipyrimidine photolyase [Vibrio metschnikovii CIP 69.14] gi|260610991|gb|EEX36195.1| deoxyribodipyrimidine photolyase [Vibrio metschnikovii CIP 69.14] Length = 475 Score = 411 bits (1057), Expect = e-112, Method: Compositional matrix adjust. Identities = 219/477 (45%), Positives = 291/477 (61%), Gaps = 16/477 (3%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 + LVWLR DLR DN AL A + ++ V A+F+ATP QW++H ++ Q+ FIY L + Sbjct: 1 MKLVWLRRDLRAIDNTALQQAIASGES-VSALFVATPHQWQRHDLAPIQADFIYRRLFTL 59 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128 Q+ L+ I Y Q ++ + + + + V ++ NR YE NE +RD E+ L Sbjct: 60 QQELAALNIPLFYKQVDDYQQASQVVSEFAQSLSVNQVLVNRDYEWNEQQRDSQTEQALS 119 Query: 129 HRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187 I + DD LL PG +LN + +KV+TPF++A + + S P A+ P Sbjct: 120 TLGIDWLACDDKCLLTPGQVLNKQGEYFKVFTPFKRAWLSRFTPPVIVSTPTAAV---NP 176 Query: 188 VTPS------NIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQG 241 + S N + F YP + D +P+ + H LR+FC++ + Y +QRD PA +G Sbjct: 177 LLDSEHNALWNERQDFAYPRVSSD-QWPVDFETVRHQLRQFCQQSIDDYHQQRDFPAQEG 235 Query: 242 TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSV 301 TS+LSPYL+IG+LS RQC R+ + L+ SGA WL+ELIWREFY+HL+ F + Sbjct: 236 TSRLSPYLAIGMLSVRQCIARMYAQSQSGLLS--SGAEIWLSELIWREFYQHLLVFESKL 293 Query: 302 CMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFL 361 GK F W ++++W+ D W +G TG+PI+DAAMRQLN GWMHNRLRM+ ASFL Sbjct: 294 SKGKAFHSWGDQLQWSDDKQAFARWCEGNTGYPIVDAAMRQLNQTGWMHNRLRMVVASFL 353 Query: 362 VKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQ 421 KDL +DW GE YFM QL+DGD A+NNGGWQW ASTG D PYFRIFNP QG+RFDP Sbjct: 354 TKDLHIDWHWGERYFMQQLIDGDYAANNGGWQWCASTGCDGQPYFRIFNPITQGERFDPS 413 Query: 422 GTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478 G FIR W+PEL +VPT YIH P W SL YP P+VDHK A TL Y AK Sbjct: 414 GQFIRQWVPELASVPTAYIHTPWKWPGVK--SLLYPSPMVDHKVAREVTLRLYKEAK 468 >gi|48951|emb|CAA43069.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp. enterica serovar Typhimurium] Length = 450 Score = 411 bits (1056), Expect = e-112, Method: Compositional matrix adjust. Identities = 244/476 (51%), Positives = 324/476 (68%), Gaps = 27/476 (5%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M HLVW R DLR+ DN AAC ++ A+V+A++I+TP QW+ H ++ RQ+ FI A L Sbjct: 1 MPTHLVWFRRDLRLQDN-LAAAACRDASARVLALYISTP-QWQAHDMAPRQAAFISAQL- 57 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 +Q +L++KGI +H+ + F+ SIE + + C Q V+ FYN QYE NE +RD+ +EK Sbjct: 58 ALQTALAEKGIPLLFHEVA-FNASIETVKNVCRQHDVSH-FYNYQYEFNERQRDRAVEKL 115 Query: 127 LQHRVICKSFDDSVLLPPGSIL-NHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185 VIC+ FDDSV+L PG++ NH +MYKV+TPF+ A ++ L + +P P IR++ Sbjct: 116 PS--VICEGFDDSVILAPGAMTGNH--EMYKVFTPFKNAWLR-LKEDIPPCVPAPKIRVS 170 Query: 186 GPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245 G TP P +YP Q D +FP+ E + LR+FC + Y + +RD PA+ GTS+L Sbjct: 171 GLSTPLT-PVSLNYPQQEFDALFPVEENAVIAQLRQFCAQADEYAL-RRDFPAVDGTSRL 228 Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305 + L+ G LSPRQC +RL + L P S WLNELIW EFYRHLM +YP++C + Sbjct: 229 AS-LATGGLSPRQCLHRLLAQPQALDGGPGS---VWLNELIW-EFYRHLMTWYPALCKHQ 283 Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365 PF WT+++ W ++ H QAW QG TG+PI+DAAMRQLN G MHNRLRMITASFLVKDL Sbjct: 284 PFR-WTKRVAWQENPHYFQAW-QGETGYPIVDAAMRQLNATG-MHNRLRMITASFLVKDL 340 Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425 L+ WR+GE YFMSQL+DGDLA+ NGGWQWAASTG D+ PYFR FNPT QG+RFD G FI Sbjct: 341 LI-WRLGERYFMSQLIDGDLAA-NGGWQWAASTGTDAAPYFR-FNPTTQGERFDRDGEFI 397 Query: 426 RHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481 R LP L ++P + IH P W K + L+YP PIV+HK+A TL+ Y AA+K + Sbjct: 398 RQ-LPALRDIPGKAIHEPWRWA-KAGVVLDYPRPIVEHKQA-RATLSAYEAARKGA 450 >gi|262403201|ref|ZP_06079761.1| deoxyribodipyrimidine photolyase [Vibrio sp. RC586] gi|262350700|gb|EEY99833.1| deoxyribodipyrimidine photolyase [Vibrio sp. RC586] Length = 469 Score = 410 bits (1054), Expect = e-112, Method: Compositional matrix adjust. Identities = 219/475 (46%), Positives = 297/475 (62%), Gaps = 12/475 (2%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 + LVWLR DLR DN AL AA + D V+AV++ATP+QW+QH ++ Q+ FI+ L + Sbjct: 1 MRLVWLRRDLRCVDNSALSAAIASGDP-VVAVYLATPKQWQQHHLAPIQADFIWRRLGAL 59 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL- 127 Q+ L++ + Y Q ++F D+ E + + ++F NR YE++E +RD E+RL Sbjct: 60 QQELAKLNVPLLYRQVADFHDAAEVICQLAKTLKAKQVFANRDYELDEQQRDLRTEQRLA 119 Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187 + ++ +FDD +LPPGS+ + +KV+TPF++A + +L Q PA++ P Sbjct: 120 EQQIAWWAFDDKCILPPGSVRTQQGEFFKVFTPFKRAWL-SLFQPPTIVKNSPALKGIIP 178 Query: 188 VTPS----NIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS 243 + N + FDY + +P+ + + LR FC+E+V Y + RD PA GTS Sbjct: 179 SELTDWIWNSEQAFDYE-RVDSSQWPVEFETIRNQLRDFCRERVQDYHQWRDFPARTGTS 237 Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCM 303 LSPYL+IG LS RQC RL E ++ GA WL+ELIWREFY+HL+A P++ Sbjct: 238 SLSPYLAIGALSARQCVARLYRESAMGVLG--EGAQVWLSELIWREFYQHLVAREPNLSK 295 Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363 + F W +EW D Q W +G TG+PI+DAAMRQLN GWMHNRLRMI ASFL K Sbjct: 296 SRDFHEWGSHLEWWNDHEKFQRWCEGQTGYPIVDAAMRQLNQTGWMHNRLRMIVASFLTK 355 Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423 DL +DWR GE YFMSQL+DGD A+NNGGWQW ASTG D PYFRIFNP QG++FDP G Sbjct: 356 DLHIDWRWGERYFMSQLIDGDYAANNGGWQWCASTGCDGQPYFRIFNPVSQGEKFDPNGD 415 Query: 424 FIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478 FIR W+PEL + + YIH P ++ N S+ YP P+VDHK+ TL Y AK Sbjct: 416 FIRRWVPELRGLSSAYIHQPWTYPAVN--SVLYPAPLVDHKQEREVTLRLYKTAK 468 >gi|323494304|ref|ZP_08099416.1| deoxyribodipyrimidine photolyase [Vibrio brasiliensis LMG 20546] gi|323311467|gb|EGA64619.1| deoxyribodipyrimidine photolyase [Vibrio brasiliensis LMG 20546] Length = 475 Score = 410 bits (1054), Expect = e-112, Method: Compositional matrix adjust. Identities = 211/476 (44%), Positives = 290/476 (60%), Gaps = 13/476 (2%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 + LVWLR DLRI DN+AL +A S+ V+A++IATPE W++HG++ Q+ I L+ + Sbjct: 1 MKLVWLRRDLRIEDNRALCSAI-ESEQPVMALYIATPETWQRHGLAPIQADLIKRRLVTL 59 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128 Q L+ + Y Q + + + + + +++N++YE +E RD L++ L Sbjct: 60 QTDLATINVPLYYAQVDTYQQAAQLVAEIAKSNSLDGVYFNKEYEFDEQNRDARLQELLV 119 Query: 129 HRVICK-SFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187 H I SFDD L PGS+LN +KV+TPF++A + Q + + I Sbjct: 120 HAGIAAHSFDDKCALQPGSVLNKQGHYFKVFTPFKRAYLTRFYQQPISVIRPQPIGEVAQ 179 Query: 188 VTPSNIPRF-----FDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGT 242 + F FDYP ++ +P+ + ++ LR F + Y + RDIP+I+GT Sbjct: 180 LHGEQAQLFSDNSSFDYPTES-SATYPVDTSSIINQLRDFVAHRSERYSDLRDIPSIEGT 238 Query: 243 SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVC 302 S+LSPYL+IG LS RQC RL ++ L G W++ELIWREFY+HL+ F + Sbjct: 239 SRLSPYLAIGALSVRQCMARLHDQHPKPL---PPGREMWMSELIWREFYQHLIYFESKLS 295 Query: 303 MGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLV 362 GK F+ W +++ W S + AWK+G TG+PI+DAAMRQLN GWMHNRLRM+ ASFL+ Sbjct: 296 KGKCFLEWGDRLSWRNSSADIDAWKKGQTGYPIVDAAMRQLNHTGWMHNRLRMVVASFLI 355 Query: 363 KDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQG 422 KDL VDW +GE YFMS+L+DGD A+NNGGWQW ASTG D PYFRIFNP QG+RFDP G Sbjct: 356 KDLHVDWHVGERYFMSKLVDGDYAANNGGWQWCASTGCDGQPYFRIFNPVSQGERFDPDG 415 Query: 423 TFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478 F+ W+PEL VP ++IH P W +LS YP PIVDHK TL+ Y AK Sbjct: 416 EFVCQWIPELAAVPRKFIHQPWKWCKAKELS--YPPPIVDHKTEREITLSLYKEAK 469 >gi|269962802|ref|ZP_06177143.1| conserved hypothetical protein [Vibrio harveyi 1DA3] gi|269832492|gb|EEZ86610.1| conserved hypothetical protein [Vibrio harveyi 1DA3] Length = 471 Score = 408 bits (1049), Expect = e-112, Method: Compositional matrix adjust. Identities = 212/478 (44%), Positives = 294/478 (61%), Gaps = 18/478 (3%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 LVW R DLR D+ AL AA +S V+A F+ATPEQW++H ++ Q+ I L +++ Sbjct: 3 LVWFRRDLRTLDHTALKAAL-DSGQPVVAGFVATPEQWQEHHMAPMQADLIARRLTHLEE 61 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH- 129 L++ + Y + F D E + + L V + N YE+NE D+ + + L + Sbjct: 62 ELTELNVPLLYKEVPKFSDVTEVIKGWALSLNVESVMANIHYEVNEQALDREVSEVLANS 121 Query: 130 RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189 V ++F D + P ++LN + +KV+TPF++A + Q + S P P L+ V Sbjct: 122 EVTFEAFHDKCVHAPTTVLNKQGEYFKVFTPFKRAWLLKF-QMPMVSKPQPQAELSKEVL 180 Query: 190 PS--------NIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQG 241 + ++P F YP ++ + + + + LR+F +E+ Y +RD+PA+ G Sbjct: 181 QAVEADRYHADVP--FSYPRESSE-RWHASTTDIVQQLREFARERSDAYQAERDLPAVDG 237 Query: 242 TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSV 301 TSQLSPYL+IG LSPRQC RL E + L G +WL+E+IWREFY+HL+ F P + Sbjct: 238 TSQLSPYLAIGALSPRQCIARLYAE--NPLPDLTEGKATWLSEIIWREFYQHLLVFEPKL 295 Query: 302 CMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFL 361 GK FIPW EKI+W+ D + WK G TG+PI+DAAMRQLN GWMHNRLRM+ ASFL Sbjct: 296 VRGKGFIPWEEKIQWSYDEQAFERWKTGTTGYPIVDAAMRQLNMTGWMHNRLRMVVASFL 355 Query: 362 VKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQ 421 KDL +DWR GE YFMS+L+DGD A+NNGGWQW+ASTG D PYFRIFNP QG++FD Sbjct: 356 TKDLHIDWRWGEAYFMSKLVDGDFAANNGGWQWSASTGCDGQPYFRIFNPISQGEKFDSD 415 Query: 422 GTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479 GTF+RHW+PE+ VP ++IH P W N L+Y P+VDHK TL + AK+ Sbjct: 416 GTFVRHWVPEIKEVPNKFIHNPWLWSGFN--LLDYHKPMVDHKVEREITLRLFKNAKE 471 >gi|145300128|ref|YP_001142969.1| deoxyribodipyrimidine photolyase [Aeromonas salmonicida subsp. salmonicida A449] gi|142852900|gb|ABO91221.1| deoxyribodipyrimidine photolyase [Aeromonas salmonicida subsp. salmonicida A449] Length = 473 Score = 408 bits (1049), Expect = e-112, Method: Compositional matrix adjust. Identities = 215/479 (44%), Positives = 288/479 (60%), Gaps = 40/479 (8%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 + LVW RNDLR+ DN AL AC + +V A+F+ +P QW+QH ++ + F+ A + ++ Sbjct: 1 MKLVWFRNDLRLADNPALRHACAEA-GEVAALFVISPTQWQQHKMAPIRQQFLLAQVDEL 59 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL- 127 K+L+ GI + F + L S + V++L+ N+ EI+E RRD + L Sbjct: 60 GKALAALGIPLHLLRVETFAEMPTALASLSRELGVSQLYANQAIEIDEQRRDLAVSAMLA 119 Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADL--------RSLPV 179 + V C F+ +LPPG +L + +M+KV+TPF +A ++ L + R+ P+ Sbjct: 120 EQEVSCHWFNGCCVLPPGRVLTGSGEMFKVFTPFSRAWLKALEEDGFVIHRAPAPRAEPL 179 Query: 180 PAIRLT---------GPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYY 230 P LT G VTP DP +P+GE A L F + V Y Sbjct: 180 PWQPLTEREWSYGALGEVTP--------------DPRWPVGEAEAQRRLHAFLEPAVLDY 225 Query: 231 VEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGA---FSWLNELIW 287 E RD PA GTS LSPYL+ G++SPRQC L++ L +P+S A F WLNEL+W Sbjct: 226 EETRDFPAQAGTSILSPYLAAGIISPRQCVGVLQQR---LGHRPQSKAQPGFVWLNELVW 282 Query: 288 REFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIG 347 REFYRHL+ P++ M PF P T + W+ D AW +G TG+PI+DAAMR L+ G Sbjct: 283 REFYRHLLVLVPTLSMNLPFKPETATLPWSWDPVAFAAWCEGRTGYPIVDAAMRCLHATG 342 Query: 348 WMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFR 407 WMHNRLRMI ASFL KDL + WR+GE+YFMSQL+DGDLA+NNGGWQWAA TG D+ PYFR Sbjct: 343 WMHNRLRMIVASFLTKDLHIHWRLGEDYFMSQLIDGDLAANNGGWQWAAGTGADAAPYFR 402 Query: 408 IFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKA 466 +FNPT QG+RFDPQG FIR W+ EL ++P Y+H PH WL YP P+VDH A Sbjct: 403 VFNPTTQGQRFDPQGDFIRTWVTELADIPAAYVHQPHDWLRLKG-GRGYPAPMVDHALA 460 >gi|149187439|ref|ZP_01865737.1| deoxyribodipyrimidine photolyase [Vibrio shilonii AK1] gi|148838975|gb|EDL55914.1| deoxyribodipyrimidine photolyase [Vibrio shilonii AK1] Length = 467 Score = 407 bits (1045), Expect = e-111, Method: Compositional matrix adjust. Identities = 212/477 (44%), Positives = 288/477 (60%), Gaps = 16/477 (3%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 + LV DLR+TDN AL A + + VIA F+ATPEQW+ H +S Q+ I+ L + Sbjct: 1 MRLVLFNRDLRVTDNTALIEAI-DGETPVIAAFVATPEQWKSHSLSPIQADLIWRRLTVL 59 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128 Q L Q + Y + ++ + WL C Q V ++F NR YEINE R + L + Sbjct: 60 QSELKQINVPLIYQEAQDYAAANTWLAEICHQFDVQEVFLNRDYEINEANRIQELSEIAG 119 Query: 129 HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188 ++FDD +L PGS+LN +KV+TPF+KA ++ + + +R V A+ Sbjct: 120 TEWRVRAFDDKCILKPGSVLNQKGDYFKVFTPFKKAWLKIVGEFIVRKPQVSAL----VT 175 Query: 189 TPSNIPRFFDYPFQAIDPM-----FPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS 243 P+N+ FD P + + + LR F +K Y +RD PA+ TS Sbjct: 176 APANL--LFDSSSSFSYPTRDSSGWSVDSHEIIQQLRDFSADKANLYHAERDFPALDSTS 233 Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCM 303 LSPYL+IG +S RQC RLK + + + +GA +WL+ELIWREFY+HL+ F P +C Sbjct: 234 MLSPYLAIGAISARQCVARLKYDAANTSLS--TGAETWLSELIWREFYQHLIYFEPKLCK 291 Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363 ++ W + ++W + W +G TG+PI+DAAMRQLNT GWMHNRLRM+ ASFL K Sbjct: 292 HHGYLSWEKHLKWTGKLDHFKQWCEGKTGYPIVDAAMRQLNTKGWMHNRLRMVVASFLTK 351 Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423 DL +DWR+GE+YFM+QL+DGD A+NNGGWQW ASTG D PYFRIFNP QG++FD G Sbjct: 352 DLHIDWRLGEQYFMTQLIDGDFAANNGGWQWCASTGCDGQPYFRIFNPISQGEKFDANGE 411 Query: 424 FIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQ 480 FIR W+PELN+VP ++IH P WL +++YP PIVDHK TL Y AK Q Sbjct: 412 FIRTWIPELNSVPNKFIHKP--WLWNEFENVDYPQPIVDHKIQRDITLALYKDAKDQ 466 >gi|156976349|ref|YP_001447255.1| deoxyribodipyrimidine photolyase [Vibrio harveyi ATCC BAA-1116] gi|156527943|gb|ABU73028.1| hypothetical protein VIBHAR_05122 [Vibrio harveyi ATCC BAA-1116] Length = 471 Score = 407 bits (1045), Expect = e-111, Method: Compositional matrix adjust. Identities = 212/478 (44%), Positives = 292/478 (61%), Gaps = 18/478 (3%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 LVW R DLR D+ AL AA ++ V+A F++TPEQW++H ++ Q+ I L+ + + Sbjct: 3 LVWFRRDLRTLDHTALKAAL-DTGQPVVAAFVSTPEQWQEHNMAPMQADLIARRLVHLDE 61 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL-QH 129 L+ I Y + F D + + L + N YE+NE D+ + L + Sbjct: 62 ELADLNIPLLYKEVPKFSDVTGVIKGWALSLNAKSVMANIHYEVNEQALDREIADVLAKS 121 Query: 130 RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189 +V ++F D + P ++LN + +KV+TPF++A + Q + S P P + T Sbjct: 122 QVTFEAFHDKCVHAPTTVLNKQGEYFKVFTPFKRAWLLKF-QMPMVSKPQPQAEILQEAT 180 Query: 190 -PSNIPRF-----FDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS 243 P R+ F YP ++ + F + + +H LR+F +E+ Y E+RD+P++ GTS Sbjct: 181 QPLEADRYHADVPFTYPRESSEQWF-VSTSDIVHHLREFARERSDAYQEKRDLPSVDGTS 239 Query: 244 QLSPYLSIGVLSPRQCWNRLKEE--FVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSV 301 QLSPYL+IG LSPRQC RL E DL G +WL+E+IWREFY+HL+ F P + Sbjct: 240 QLSPYLAIGALSPRQCIARLYAENPHTDL----TDGKATWLSEIIWREFYQHLLVFEPKL 295 Query: 302 CMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFL 361 GK FIPW +KIEW+ D + WK G TG+PI+DAAMRQLNT GWMHNRLRMI ASFL Sbjct: 296 VKGKGFIPWEDKIEWSYDEAAFERWKTGTTGYPIVDAAMRQLNTTGWMHNRLRMIVASFL 355 Query: 362 VKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQ 421 KDL +DWR GE YFMS+L+DGD A+NNGGWQW+ASTG D PYFRIFNP QG++FD Sbjct: 356 TKDLHIDWRWGEAYFMSKLVDGDFAANNGGWQWSASTGCDGQPYFRIFNPISQGEKFDSD 415 Query: 422 GTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479 G F+R+W+PE+ VP ++IH P W N L+Y P+VDHK TL + AK+ Sbjct: 416 GAFVRYWVPEIKQVPNKFIHNPWLWSGFN--LLDYHKPMVDHKVEREITLRLFKNAKE 471 >gi|15600828|ref|NP_232458.1| deoxyribodipyrimidine photolyase [Vibrio cholerae O1 biovar eltor str. N16961] gi|121585968|ref|ZP_01675761.1| deoxyribodipyrimidine photolyase, cyclobutane pyrimidine dimer-specific [Vibrio cholerae 2740-80] gi|153820061|ref|ZP_01972728.1| deoxyribodipyrimidine photolyase, cyclobutane pyrimidine dimer-specific [Vibrio cholerae NCTC 8457] gi|227811685|ref|YP_002811695.1| deoxyribodipyrimidine photolyase [Vibrio cholerae M66-2] gi|229506767|ref|ZP_04396276.1| deoxyribodipyrimidine photolyase [Vibrio cholerae BX 330286] gi|229510438|ref|ZP_04399918.1| deoxyribodipyrimidine photolyase [Vibrio cholerae B33] gi|229517431|ref|ZP_04406876.1| deoxyribodipyrimidine photolyase [Vibrio cholerae RC9] gi|229605241|ref|YP_002875945.1| deoxyribodipyrimidine photolyase [Vibrio cholerae MJ-1236] gi|254850324|ref|ZP_05239674.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae MO10] gi|255746116|ref|ZP_05420063.1| deoxyribodipyrimidine photolyase [Vibrio cholera CIRS 101] gi|262158603|ref|ZP_06029717.1| deoxyribodipyrimidine photolyase [Vibrio cholerae INDRE 91/1] gi|298499922|ref|ZP_07009728.1| deoxyribodipyrimidine photolyase [Vibrio cholerae MAK 757] gi|81858027|sp|Q9KNA8|PHR_VIBCH RecName: Full=Deoxyribodipyrimidine photo-lyase; AltName: Full=DNA photolyase; AltName: Full=Photoreactivating enzyme gi|9657440|gb|AAF95971.1| deoxyribodipyrimidine photolyase [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121549904|gb|EAX59924.1| deoxyribodipyrimidine photolyase, cyclobutane pyrimidine dimer-specific [Vibrio cholerae 2740-80] gi|126509396|gb|EAZ71990.1| deoxyribodipyrimidine photolyase, cyclobutane pyrimidine dimer-specific [Vibrio cholerae NCTC 8457] gi|227010827|gb|ACP07038.1| deoxyribodipyrimidine photolyase [Vibrio cholerae M66-2] gi|229345467|gb|EEO10440.1| deoxyribodipyrimidine photolyase [Vibrio cholerae RC9] gi|229352883|gb|EEO17823.1| deoxyribodipyrimidine photolyase [Vibrio cholerae B33] gi|229357118|gb|EEO22036.1| deoxyribodipyrimidine photolyase [Vibrio cholerae BX 330286] gi|229371727|gb|ACQ62149.1| deoxyribodipyrimidine photolyase [Vibrio cholerae MJ-1236] gi|254846029|gb|EET24443.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae MO10] gi|255735870|gb|EET91268.1| deoxyribodipyrimidine photolyase [Vibrio cholera CIRS 101] gi|262029483|gb|EEY48133.1| deoxyribodipyrimidine photolyase [Vibrio cholerae INDRE 91/1] gi|297541903|gb|EFH77954.1| deoxyribodipyrimidine photolyase [Vibrio cholerae MAK 757] Length = 469 Score = 406 bits (1043), Expect = e-111, Method: Compositional matrix adjust. Identities = 219/482 (45%), Positives = 294/482 (60%), Gaps = 26/482 (5%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 + LVW R DLR DN AL AA ++ D V A++IATPEQW QH ++ Q+ I+ L ++ Sbjct: 1 MRLVWFRRDLRSFDNTALTAALNSGD-PVAAMYIATPEQWHQHHLAPIQADLIWRRLAEL 59 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128 Q+ L+ + Y Q ++F + + T++ NR YE++E +RD+L ++ L Sbjct: 60 QQELAALNVPLFYQQVADFQAAAVAVSQLAKTLNATQVLANRDYELDEQQRDQLAQQLLS 119 Query: 129 HR-VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187 + +I +FDD +LPPGS+ + +KV+TPF++A + L Q P I P Sbjct: 120 EQGIIWSAFDDKCVLPPGSVRTKQGEFFKVFTPFKRAWL-TLFQP-------PVIGKNRP 171 Query: 188 VTPSNIP-----------RFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDI 236 V N+P + FDYP P + + LR FC+E+V Y + RD Sbjct: 172 VALWNVPSALAELVWHPEQAFDYPRIDSTP-WAADFETVRAQLRDFCRERVQDYHQARDF 230 Query: 237 PAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMA 296 PA +GTS LSPYL+IGVLS RQC RL E + + GA WL+ELIWREFY+HL+A Sbjct: 231 PAREGTSSLSPYLAIGVLSARQCVARLYHE--SSMGELSEGAQVWLSELIWREFYQHLVA 288 Query: 297 FYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMI 356 P++ + F+ W ++EW D+ Q W +G TG+PI+DAAMRQLN GWMHNRLRMI Sbjct: 289 IEPNLSKSRDFVEWGARLEWWNDNEKFQLWCEGKTGYPIVDAAMRQLNQTGWMHNRLRMI 348 Query: 357 TASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGK 416 ASFL KDL +DWR GE YFMS+L+DGD A+NNGGWQW ASTG D PYFRIFNP QG+ Sbjct: 349 VASFLTKDLHIDWRWGERYFMSRLIDGDYAANNGGWQWCASTGCDGQPYFRIFNPVSQGE 408 Query: 417 RFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYA 476 +FDP G FIR W+PEL +V + YIH P ++ N S+ YP +VDHK+ TL Y Sbjct: 409 KFDPNGDFIRRWVPELRSVSSAYIHQPWTYPAVN--SVLYPARLVDHKQEREVTLRLYKT 466 Query: 477 AK 478 AK Sbjct: 467 AK 468 >gi|254228731|ref|ZP_04922154.1| deoxyribodipyrimidine photolyase family [Vibrio sp. Ex25] gi|262396547|ref|YP_003288400.1| deoxyribodipyrimidine photolyase [Vibrio sp. Ex25] gi|151938678|gb|EDN57513.1| deoxyribodipyrimidine photolyase family [Vibrio sp. Ex25] gi|262340141|gb|ACY53935.1| deoxyribodipyrimidine photolyase [Vibrio sp. Ex25] Length = 471 Score = 405 bits (1042), Expect = e-111, Method: Compositional matrix adjust. Identities = 214/476 (44%), Positives = 286/476 (60%), Gaps = 14/476 (2%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 LVW R DLR D+ AL AA +S V+A FIATPEQWR+H ++ Q+ I L + Sbjct: 3 LVWFRRDLRTLDHTALKAAL-DSGQPVVACFIATPEQWREHHMAPMQADLIARRLEYLND 61 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL-QH 129 L + F Y + +F D E + + T + N YE+NE D + + L H Sbjct: 62 ELESLNVPFLYKEVPSFSDCTEVISEWAKTLEATSVMANIHYEVNERELDAQVSEALASH 121 Query: 130 RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189 + + F D + PP ++LN + +KV+TPF++A + Q + P L+ + Sbjct: 122 DIDFELFHDKCVHPPTTVLNKQGEYFKVFTPFKRAWLTQF-QMPAVTKPQEQAPLSSKLL 180 Query: 190 PSNIP-RF-----FDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS 243 P RF F YP ++ + F + L LR+F +E+ Y E+RD PAI GTS Sbjct: 181 EQLEPIRFSSDFTFSYPRESSEDWF-ASTNDVLKQLREFARERSDAYKEERDFPAIDGTS 239 Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCM 303 QLSPYL+IG LSPRQC RL E + G +WL+E+IWREFY+HL+ F P + Sbjct: 240 QLSPYLAIGALSPRQCIARLYAE--NQQNDLTEGKATWLSEIIWREFYQHLLVFEPKLVK 297 Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363 GK FI W +KI+W+ D + WK G TG+PI+DAAMRQLN GWMHNRLRM+ ASFL K Sbjct: 298 GKGFIDWEDKIQWSYDEQAFERWKAGATGYPIVDAAMRQLNQTGWMHNRLRMVVASFLTK 357 Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423 DL +DWR GE YFMS+L+DGD A+NNGGWQW+ASTG D PYFRIFNP QG++FD G Sbjct: 358 DLHIDWRWGEAYFMSKLVDGDFAANNGGWQWSASTGCDGQPYFRIFNPISQGEKFDSDGQ 417 Query: 424 FIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479 F+RHW+PE+ +VP +YIH P +W + L Y P+VDHK TL + +AK+ Sbjct: 418 FVRHWVPEIKSVPNKYIHKPWTW--EGFSLLEYHKPMVDHKTEREITLRLFKSAKE 471 >gi|153831640|ref|ZP_01984307.1| deoxyribodipyrimidine photo-lyase [Vibrio harveyi HY01] gi|148872150|gb|EDL70967.1| deoxyribodipyrimidine photo-lyase [Vibrio harveyi HY01] Length = 471 Score = 405 bits (1041), Expect = e-111, Method: Compositional matrix adjust. Identities = 211/478 (44%), Positives = 293/478 (61%), Gaps = 18/478 (3%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 LVW R DLR D+ AL AA ++ V+A F++TPEQW++H ++ Q+ I L+ + + Sbjct: 3 LVWFRRDLRTLDHTALKAAL-DTGQPVVAGFVSTPEQWQEHNMAPMQADLIARRLVHLNE 61 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL-QH 129 L+ I Y + F + E + + L + N YE+NE D+ + L + Sbjct: 62 ELADLNIPLLYKEVPKFSNVTEVIKDWALSLNAKSVMANIHYEVNEQALDREVADVLAKS 121 Query: 130 RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL-TGPV 188 +V ++F D + P ++LN + +KV+TPF++A + Q + S P P + + Sbjct: 122 QVTFEAFHDKCVHAPTTVLNKQGEYFKVFTPFKRAWLLKF-QMPMVSKPEPQAEIPQEAI 180 Query: 189 TPSNIPRF-----FDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS 243 P R+ F YP ++ D + + + +H LR+F +E+ Y E+RD+P++ GTS Sbjct: 181 QPLEADRYHADVPFTYPRESSDQWY-VSTSDIVHHLREFARERSDAYQEKRDLPSVDGTS 239 Query: 244 QLSPYLSIGVLSPRQCWNRLKEE--FVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSV 301 QLSPYL+IG LSPRQC RL E DL G +WL+E+IWREFY+HL+ F P + Sbjct: 240 QLSPYLAIGALSPRQCIARLYAENPHTDL----TDGKATWLSEIIWREFYQHLLVFEPKL 295 Query: 302 CMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFL 361 GK FIPW +KIEW+ D + WK G TG+PI+DAAMRQLN GWMHNRLRMI ASFL Sbjct: 296 VKGKGFIPWEDKIEWSYDEAAFERWKTGTTGYPIVDAAMRQLNATGWMHNRLRMIVASFL 355 Query: 362 VKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQ 421 KDL +DWR GE YFMS+L+DGD A+NNGGWQW+ASTG D PYFRIFNP QG++FD Sbjct: 356 TKDLHIDWRWGEAYFMSKLVDGDFAANNGGWQWSASTGCDGQPYFRIFNPISQGEKFDSD 415 Query: 422 GTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479 GTF+R+W+PE+ VP ++IH P W N L+Y P+VDHK TL + AK+ Sbjct: 416 GTFVRYWVPEIKQVPNKFIHNPWLWSGFN--LLDYHKPMVDHKVEREITLRLFKNAKE 471 >gi|229514567|ref|ZP_04404028.1| deoxyribodipyrimidine photolyase [Vibrio cholerae TMA 21] gi|229348547|gb|EEO13505.1| deoxyribodipyrimidine photolyase [Vibrio cholerae TMA 21] Length = 469 Score = 404 bits (1037), Expect = e-110, Method: Compositional matrix adjust. Identities = 218/482 (45%), Positives = 293/482 (60%), Gaps = 26/482 (5%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 + LVW R DLR DN AL AA ++ D V A++IATPEQW QH ++ Q+ I+ L ++ Sbjct: 1 MRLVWFRRDLRSFDNTALTAALNSGD-PVAAMYIATPEQWHQHHLAPIQADLIWRRLAEL 59 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128 Q+ L+ + Y Q ++F + + T++ NR YE++E +RD+ ++ L Sbjct: 60 QQELAALNVPLFYQQVADFQAAAVAVSQLAKTLNATQVLANRDYELDEQQRDQSAQQLLS 119 Query: 129 HR-VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187 + +I +FDD +LPPGS+ + +KV+TPF++A + L Q P I P Sbjct: 120 EQGIIWSAFDDKCVLPPGSVRTKQGEFFKVFTPFKRAWL-TLFQP-------PVIGKNRP 171 Query: 188 VTPSNIP-----------RFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDI 236 V N+P + FDYP P + + LR FC+E+V Y + RD Sbjct: 172 VALWNVPSALAELVWHPEQTFDYPRVDSTP-WAADFETVRAQLRDFCRERVQDYHQARDF 230 Query: 237 PAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMA 296 PA +GTS LSPYL+IGVLS RQC RL E + + GA WL+ELIWREFY+HL+A Sbjct: 231 PAQEGTSSLSPYLAIGVLSARQCVARLYHE--SSMGELSEGAQVWLSELIWREFYQHLVA 288 Query: 297 FYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMI 356 P++ + F+ W ++EW D+ Q W +G TG+PI+DAAMRQLN GWMHNRLRMI Sbjct: 289 IEPNLSKSRDFVEWGARLEWWNDNEKFQLWCEGKTGYPIVDAAMRQLNQTGWMHNRLRMI 348 Query: 357 TASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGK 416 ASFL KDL +DWR GE YFMS+L+DGD A+NNGGWQW ASTG D PYFRIFNP QG+ Sbjct: 349 VASFLTKDLHIDWRWGERYFMSRLIDGDYAANNGGWQWCASTGCDGQPYFRIFNPVSQGE 408 Query: 417 RFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYA 476 +FDP G FIR W+PEL +V + YIH P ++ N S+ YP +VDHK+ TL Y Sbjct: 409 KFDPNGDFIRRWVPELRSVSSAYIHQPWTYPAVN--SVLYPARLVDHKQEREVTLRLYKT 466 Query: 477 AK 478 AK Sbjct: 467 AK 468 >gi|262173169|ref|ZP_06040846.1| deoxyribodipyrimidine photolyase [Vibrio mimicus MB-451] gi|261890527|gb|EEY36514.1| deoxyribodipyrimidine photolyase [Vibrio mimicus MB-451] Length = 469 Score = 404 bits (1037), Expect = e-110, Method: Compositional matrix adjust. Identities = 217/481 (45%), Positives = 290/481 (60%), Gaps = 24/481 (4%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 + LVW R DLR DN AL AA + + V AV++ATP+QW QH ++ Q+ FI+ L + Sbjct: 1 MKLVWFRRDLRSFDNTALTAAIESGET-VAAVYVATPQQWLQHHLAPIQADFIWRRLAAL 59 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128 Q+ L+ + Y Q ++F ++ ++ ++ NR YE++E +RD E+ L Sbjct: 60 QQELAAINVPLFYQQVADFREAANAVNQLAKALNANQVLANRDYELDEQQRDLRTEQLLA 119 Query: 129 HRVIC-KSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187 + I +FDD +LPPGS+ + +KV+TPF++A + +L Q P I Sbjct: 120 EQGISWSAFDDKCILPPGSLRTKQGEFFKVFTPFKRAWL-SLFQP-------PVIPRNHS 171 Query: 188 VTPSNIPRFFDYPFQAIDPMF----------PIGEQNALHILRKFCKEKVYYYVEQRDIP 237 P N+P F + D MF P+ + LR FC+E+V Y + RD P Sbjct: 172 AAPWNVPNEFSHLVWNTDQMFNYPRVDSSQWPVEFEVIRTQLRDFCRERVQDYHQWRDFP 231 Query: 238 AIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAF 297 A +GTS LSPYL+IG LS RQC RL E + GA WL+ELIWREFY+HL+A Sbjct: 232 AREGTSILSPYLAIGALSARQCVARLYRE--SEMSALSEGAQVWLSELIWREFYQHLVAI 289 Query: 298 YPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMIT 357 P++ + F+ W ++EW DS Q W +G TG+PI+DAAMRQLN GWMHNRLRMI Sbjct: 290 EPNISKSRDFLEWGARLEWWNDSEKFQRWCEGNTGYPIVDAAMRQLNQTGWMHNRLRMIV 349 Query: 358 ASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKR 417 ASFL KDL +DWR GE YFMS+L+DGD A+NNGGWQW ASTG D PYFRIFNP QG++ Sbjct: 350 ASFLTKDLHIDWRWGERYFMSRLIDGDYAANNGGWQWCASTGCDGQPYFRIFNPVSQGEK 409 Query: 418 FDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477 FDP G FIR W+PEL +V + YIH P ++ N S+ YP P+VDHK+ TL Y A Sbjct: 410 FDPNGDFIRRWVPELRSVSSAYIHQPWTYPAVN--SVLYPPPLVDHKQEREVTLRLYKTA 467 Query: 478 K 478 K Sbjct: 468 K 468 >gi|28901326|ref|NP_800981.1| deoxyribodipyrimidine photolyase [Vibrio parahaemolyticus RIMD 2210633] gi|260362883|ref|ZP_05775752.1| deoxyribodipyrimidine photo-lyase [Vibrio parahaemolyticus K5030] gi|260880171|ref|ZP_05892526.1| deoxyribodipyrimidine photo-lyase [Vibrio parahaemolyticus AN-5034] gi|260895288|ref|ZP_05903784.1| deoxyribodipyrimidine photo-lyase [Vibrio parahaemolyticus Peru-466] gi|28809873|dbj|BAC62814.1| deoxyribodipyrimidine photolyase [Vibrio parahaemolyticus RIMD 2210633] gi|308085662|gb|EFO35357.1| deoxyribodipyrimidine photo-lyase [Vibrio parahaemolyticus Peru-466] gi|308091875|gb|EFO41570.1| deoxyribodipyrimidine photo-lyase [Vibrio parahaemolyticus AN-5034] gi|308112450|gb|EFO49990.1| deoxyribodipyrimidine photo-lyase [Vibrio parahaemolyticus K5030] Length = 471 Score = 403 bits (1036), Expect = e-110, Method: Compositional matrix adjust. Identities = 211/475 (44%), Positives = 290/475 (61%), Gaps = 12/475 (2%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 LVW R DLR D+ AL AA ++ V+A FIATPEQW++H ++ Q+ I L V + Sbjct: 3 LVWFRRDLRTLDHTALKAAL-DTGQPVVACFIATPEQWQEHHMAPMQADLIARRLEHVHQ 61 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130 L++ I Y + FDD + + + + T N YE+NEV D+ + + L +R Sbjct: 62 ELTELNIPLLYKEVPRFDDCTQVICDWADKLNATAAMVNINYEVNEVELDRKVSQALDNR 121 Query: 131 -VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNL----VQADLRSLPVPAIRLT 185 V +F D + P ++LN + +KV+TPF++A +Q V R +P+ +L Sbjct: 122 GVEFHAFHDKCVHAPTTVLNKQGEYFKVFTPFKRAWLQKFSLPTVSKPQRQNELPSAQLA 181 Query: 186 GPVTPSNIPRF-FDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244 F F YP ++ + + + + L LR F +E+ Y +RD PAI GTSQ Sbjct: 182 AVKQDGFDADFTFSYPRESSE-AWCVSTNDILKQLRTFARERSDGYQMKRDFPAIDGTSQ 240 Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304 LSPYL+IG LSPRQC RL E + G +WL+E+IWREFY+HL+ F P + G Sbjct: 241 LSPYLAIGALSPRQCIARLYAENPQPDLS--EGKATWLSEIIWREFYQHLLVFEPKLVKG 298 Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364 + FI W +KI+W+ D + WK G TG+PI+DAAMRQLN GWMHNRLRMI ASFL KD Sbjct: 299 RGFIDWEDKIQWSYDEQAFECWKTGTTGYPIVDAAMRQLNQTGWMHNRLRMIVASFLTKD 358 Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424 L +DWR GEEYFMS+L+DGD A+NNGGWQW+ASTG D PYFRIFNP QG++FD G F Sbjct: 359 LHIDWRWGEEYFMSKLVDGDFAANNGGWQWSASTGCDGQPYFRIFNPISQGEKFDSDGQF 418 Query: 425 IRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479 +RHW+PE+ +VP +++H P +W + L Y P+VDHK TL + +AK+ Sbjct: 419 VRHWVPEIKSVPNKFVHKPWTW--EGFSLLEYHKPMVDHKVEREITLRLFKSAKE 471 >gi|153827504|ref|ZP_01980171.1| deoxyribodipyrimidine photolyase, cyclobutane pyrimidine dimer-specific [Vibrio cholerae MZO-2] gi|149738567|gb|EDM52922.1| deoxyribodipyrimidine photolyase, cyclobutane pyrimidine dimer-specific [Vibrio cholerae MZO-2] Length = 469 Score = 403 bits (1036), Expect = e-110, Method: Compositional matrix adjust. Identities = 216/475 (45%), Positives = 292/475 (61%), Gaps = 12/475 (2%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 + LVW R DLR DN AL AA ++ D V A++IATPEQW QH ++ Q+ I+ L ++ Sbjct: 1 MRLVWFRRDLRSFDNTALTAALNSGD-PVAAMYIATPEQWHQHHLAPIQADLIWRRLAEL 59 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128 Q+ L+ + Y Q ++F + + T++ NR YE++E +RD+ ++ L Sbjct: 60 QQELAALNVPLFYQQVADFQAAAVAVSQLAKTLNATQVLANRDYELDEQQRDQSAQQLLS 119 Query: 129 HRVIC-KSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187 + I +FDD +LPPGS+ + +KV+TPF++A + L Q + PA P Sbjct: 120 EQGITWSAFDDKCVLPPGSVRTKQGEFFKVFTPFKRAWL-TLFQPPVIGKNRPAALWDVP 178 Query: 188 VTPSNI----PRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS 243 T + + + FDYP P + + LR FC+E+V Y + RD PA +GTS Sbjct: 179 STLAELVWHPEQTFDYPRVDSTP-WAADFETVRAQLRDFCRERVQDYHQARDFPAQEGTS 237 Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCM 303 LSPYL+IGVLS RQC RL E + + GA WL+ELIWREFY+HL+A P++ Sbjct: 238 SLSPYLAIGVLSARQCVARLYHE--SSMGELSEGAQVWLSELIWREFYQHLVAIEPNLSK 295 Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363 + F+ W ++EW D+ Q W +G TG+PI+DAAMRQLN GWMHNRLRMI ASFL K Sbjct: 296 SRDFVEWGARLEWWNDNEKFQLWCEGKTGYPIVDAAMRQLNQTGWMHNRLRMIVASFLTK 355 Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423 DL +DWR GE YFMS+L+DGD A+NNGGWQW ASTG D PYFRIFNP QG++FDP G Sbjct: 356 DLHIDWRWGERYFMSRLIDGDYAANNGGWQWCASTGCDGQPYFRIFNPVSQGEKFDPNGD 415 Query: 424 FIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478 FIR W+PEL +V + YIH P ++ N S+ YP +VDHK+ TL Y AK Sbjct: 416 FIRRWVPELRSVSSAYIHQPWTYPAVN--SVLYPARLVDHKQEREVTLRLYKTAK 468 >gi|258624237|ref|ZP_05719186.1| deoxyribodipyrimidine photolyase, cyclobutane pyrimidine dimer-specific [Vibrio mimicus VM603] gi|258583388|gb|EEW08188.1| deoxyribodipyrimidine photolyase, cyclobutane pyrimidine dimer-specific [Vibrio mimicus VM603] Length = 469 Score = 402 bits (1032), Expect = e-110, Method: Compositional matrix adjust. Identities = 215/481 (44%), Positives = 289/481 (60%), Gaps = 24/481 (4%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 + LVW R DLR DN AL AA + + V AV++A P+QW QH ++ Q+ FI+ L + Sbjct: 1 MKLVWFRRDLRSFDNTALTAAIESGET-VAAVYVAAPQQWHQHHLAPIQADFIWRRLAAL 59 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128 Q+ L+ + Y Q ++F ++ ++ ++ NR YE++E +RD E+ L Sbjct: 60 QQELAAINVPLFYQQVADFREAATAVNQLAKALNANQVLANRDYELDEQQRDLRTEQLLA 119 Query: 129 HRVIC-KSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187 + I +FDD +LPPGS+ + +KV+TPF++A + +L Q P I Sbjct: 120 EQGISWSAFDDKCILPPGSVRTKQGEFFKVFTPFKRAWL-SLFQP-------PVIPRNHS 171 Query: 188 VTPSNIPRFFDYPFQAIDPMF----------PIGEQNALHILRKFCKEKVYYYVEQRDIP 237 P ++P F + D MF P+ + LR FC+E+V Y + RD P Sbjct: 172 AAPWDVPNEFSHLVWHTDQMFNYPRVDSSQWPVEFEVIRTQLRDFCRERVQDYHQWRDFP 231 Query: 238 AIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAF 297 A +GTS LSPYL+IG LS RQC RL E + GA WL+ELIWREFY+HL+A Sbjct: 232 AREGTSVLSPYLAIGALSARQCVARLYRE--SAMSALSEGAQVWLSELIWREFYQHLVAI 289 Query: 298 YPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMIT 357 P++ + F+ W ++EW DS Q W +G TG+PI+DAAMRQLN GWMHNRLRMI Sbjct: 290 EPNISKSRDFLEWGARLEWWNDSEKFQRWCEGNTGYPIVDAAMRQLNQTGWMHNRLRMIV 349 Query: 358 ASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKR 417 ASFL KDL +DWR GE YFMS+L+DGD A+NNGGWQW ASTG D PYFRIFNP QG++ Sbjct: 350 ASFLTKDLHIDWRWGERYFMSRLIDGDYAANNGGWQWCASTGCDGQPYFRIFNPVSQGEK 409 Query: 418 FDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477 FDP G FIR W+PEL +V + YIH P ++ N S+ YP P+VDHK+ TL Y A Sbjct: 410 FDPNGDFIRRWVPELRSVSSAYIHQPWTYPAVN--SVLYPPPLVDHKQEREVTLRLYKTA 467 Query: 478 K 478 K Sbjct: 468 K 468 >gi|229522729|ref|ZP_04412145.1| deoxyribodipyrimidine photolyase [Vibrio cholerae TM 11079-80] gi|229340714|gb|EEO05720.1| deoxyribodipyrimidine photolyase [Vibrio cholerae TM 11079-80] Length = 469 Score = 402 bits (1032), Expect = e-110, Method: Compositional matrix adjust. Identities = 215/475 (45%), Positives = 291/475 (61%), Gaps = 12/475 (2%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 + LVW R DLR DN AL AA ++ D V A++IATPEQW QH ++ Q+ ++ L ++ Sbjct: 1 MRLVWFRRDLRSFDNTALTAALNSGD-PVAAMYIATPEQWHQHHLAPIQADLMWRRLAEL 59 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128 Q+ L+ + Y Q ++F + + T++ NR YE++E +RD+ ++ L Sbjct: 60 QQELAALNVPLFYQQVADFQAAAVAVSQLAKTLNATQVLANRDYELDEQQRDQSAQQLLS 119 Query: 129 HRVIC-KSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187 + I +FDD +LPPGS+ + +KV+TPF++A + L Q + PA P Sbjct: 120 EQGITWSAFDDKCVLPPGSVRTKQGEFFKVFTPFKRAWL-TLFQPPVIGKNRPAALWGVP 178 Query: 188 VTPSNI----PRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS 243 + + + FDYP P + + LR FC+E+V Y + RD PA +GTS Sbjct: 179 SALAELVWHPEQAFDYPRIDSTP-WAADFETVRAQLRDFCRERVQDYHQARDFPAREGTS 237 Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCM 303 LSPYL+IGVLS RQC RL E + +P GA WL+ELIWREFY+HL+A P++ Sbjct: 238 SLSPYLAIGVLSARQCVARLYHE--SSMGEPSEGAQVWLSELIWREFYQHLVAIEPNLSK 295 Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363 F+ W ++EW D+ Q W +G TG+PI+DAAMRQLN GWMHNRLRMI ASFL K Sbjct: 296 SLDFVEWGARLEWWNDNEKFQLWCEGKTGYPIVDAAMRQLNQTGWMHNRLRMIVASFLTK 355 Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423 DL +DWR GE YFMS+L+DGD A+NNGGWQW ASTG D PYFRIFNP QG++FDP G Sbjct: 356 DLHIDWRWGERYFMSRLIDGDYAANNGGWQWCASTGCDGQPYFRIFNPVSQGEKFDPNGD 415 Query: 424 FIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478 FIR W+PEL +V + YIH P ++ N S+ YP +VDHK+ TL Y AK Sbjct: 416 FIRRWVPELRSVSSAYIHQPWTYPAVN--SVLYPARLVDHKQEREVTLRLYKTAK 468 >gi|262164645|ref|ZP_06032383.1| deoxyribodipyrimidine photolyase [Vibrio mimicus VM223] gi|262027025|gb|EEY45692.1| deoxyribodipyrimidine photolyase [Vibrio mimicus VM223] Length = 469 Score = 402 bits (1032), Expect = e-110, Method: Compositional matrix adjust. Identities = 216/481 (44%), Positives = 289/481 (60%), Gaps = 24/481 (4%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 + LVW R DLR DN AL AA + + V AV++ATP+QW QH ++ Q+ FI+ L + Sbjct: 1 MKLVWFRRDLRSFDNTALTAAIESGET-VAAVYVATPQQWLQHHLAPIQADFIWRRLSAL 59 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128 Q+ L+ I Y Q ++F ++ ++ ++ NR YE++E +RD E+ L Sbjct: 60 QQELAAINIPLFYQQVADFREAAHAVNQLAKALNANQVLANRDYELDEQQRDLRTEQLLA 119 Query: 129 HRVIC-KSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187 + I +FDD +LPPGS+ +KV+TPF++A + +L Q P I Sbjct: 120 EQGISWSAFDDKCILPPGSVRTKQGDFFKVFTPFKRAWL-SLFQP-------PVIPRNHS 171 Query: 188 VTPSNIPRFFDYPFQAIDPMF----------PIGEQNALHILRKFCKEKVYYYVEQRDIP 237 P ++P F + D +F P+ + LR FC+E+V Y + RD P Sbjct: 172 AAPWDVPNEFSHLVWNTDQVFNYPRVDSSQWPVEFEVIRTQLRDFCRERVQDYHQWRDFP 231 Query: 238 AIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAF 297 A +GTS LSPYL+IG LS RQC RL E + GA WL+ELIWREFY+HL+A Sbjct: 232 AREGTSVLSPYLAIGALSARQCVARLYRE--SAMSALSEGAQVWLSELIWREFYQHLVAI 289 Query: 298 YPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMIT 357 P++ + F+ W ++EW DS Q W +G TG+PI+DAAMRQLN GWMHNRLRMI Sbjct: 290 EPNISKSRDFLEWGARLEWWNDSEKFQRWCEGNTGYPIVDAAMRQLNQTGWMHNRLRMIV 349 Query: 358 ASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKR 417 ASFL KDL +DWR GE YFMS+L+DGD A+NNGGWQW ASTG D PYFRIFNP QG++ Sbjct: 350 ASFLTKDLHIDWRWGERYFMSRLIDGDYAANNGGWQWCASTGCDGQPYFRIFNPVSQGEK 409 Query: 418 FDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477 FDP G FIR W+PEL +V + YIH P ++ N S+ YP P+VDHK+ TL Y A Sbjct: 410 FDPNGDFIRRWVPELRSVSSAYIHQPWTYPAVN--SVLYPAPLVDHKQEREVTLRLYKTA 467 Query: 478 K 478 K Sbjct: 468 K 468 >gi|153212812|ref|ZP_01948448.1| deoxyribodipyrimidine photolyase, cyclobutane pyrimidine dimer-specific [Vibrio cholerae 1587] gi|124116325|gb|EAY35145.1| deoxyribodipyrimidine photolyase, cyclobutane pyrimidine dimer-specific [Vibrio cholerae 1587] Length = 469 Score = 401 bits (1030), Expect = e-109, Method: Compositional matrix adjust. Identities = 215/475 (45%), Positives = 291/475 (61%), Gaps = 12/475 (2%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 + LVW R DLR DN AL AA ++ D V A++IATPEQW QH ++ Q+ I+ L ++ Sbjct: 1 MRLVWFRRDLRSFDNTALTAALNSGD-PVAAMYIATPEQWHQHHLAPIQADLIWRRLAEL 59 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128 Q+ L+ + Y Q ++F + + T++ NR YE++E +RD+ ++ L Sbjct: 60 QQELAALNVPLFYQQVADFQAAAVAVSQLAKTLNATQVLANRDYELDEQQRDQSAQQLLS 119 Query: 129 HRVIC-KSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187 + I +FDD +LPPGS+ + +KV+TPF++A + L Q + PA P Sbjct: 120 EQGITWSAFDDKCVLPPGSVRTKQGEFFKVFTPFKRAWL-TLFQPPVIGKNRPAALWNVP 178 Query: 188 VTPSNI----PRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS 243 + + + FDYP P + + LR FC+E+V Y + RD PA +GTS Sbjct: 179 SALAELVWHPEQTFDYPRIDSTP-WAADFETVRAQLRDFCRERVQDYHQARDFPAREGTS 237 Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCM 303 LSPYL+IGVLS RQC RL E + + GA WL+ELIWREFY+HL+A P++ Sbjct: 238 SLSPYLAIGVLSARQCVARLYHE--SSMGELSEGAQVWLSELIWREFYQHLVAIEPNLSK 295 Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363 + F+ W ++EW D+ Q W +G TG+PI+DAAMRQLN GWMHNRLRMI ASFL K Sbjct: 296 SRDFVEWGARLEWWNDNEKFQLWCEGKTGYPIVDAAMRQLNQTGWMHNRLRMIVASFLTK 355 Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423 DL +DWR GE YFMS+L+DGD A+NNGGWQW ASTG D PYFRIFNP QG++FDP G Sbjct: 356 DLHIDWRWGERYFMSRLIDGDYAANNGGWQWCASTGCDGQPYFRIFNPVSQGEKFDPNGD 415 Query: 424 FIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478 FIR W+PEL +V + YIH P ++ N S+ YP +VDHK+ TL Y AK Sbjct: 416 FIRRWVPELRSVSSAYIHQPWTYPAVN--SVLYPARLVDHKQEREVTLRLYKTAK 468 >gi|254284783|ref|ZP_04959750.1| deoxyribodipyrimidine photolyase, cyclobutane pyrimidine dimer-specific [Vibrio cholerae AM-19226] gi|150425568|gb|EDN17344.1| deoxyribodipyrimidine photolyase, cyclobutane pyrimidine dimer-specific [Vibrio cholerae AM-19226] Length = 469 Score = 401 bits (1030), Expect = e-109, Method: Compositional matrix adjust. Identities = 215/475 (45%), Positives = 291/475 (61%), Gaps = 12/475 (2%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 + LVW R DLR DN AL AA ++ D V A++IATPEQW QH ++ Q+ I+ L ++ Sbjct: 1 MRLVWFRRDLRSFDNTALTAALNSGD-PVAAMYIATPEQWHQHHLAPIQADLIWRRLAEL 59 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128 Q+ L+ + Y Q ++F + + T++ NR YE++E +RD+ ++ L Sbjct: 60 QQELAALNVPLFYQQVADFQAAAVAVSQLAKTLNATQVLANRDYELDEQQRDQSAQQLLS 119 Query: 129 HRVIC-KSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187 + I +FDD +LPPGS+ + +KV+TPF++A + L Q + PA P Sbjct: 120 EQGITWSAFDDKCVLPPGSVRTKQGEFFKVFTPFKRAWL-TLFQPPVIGKNRPAALWNVP 178 Query: 188 VTPSNI----PRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS 243 + + + FDYP P + + LR FC+E+V Y + RD PA +GTS Sbjct: 179 SALAELVWHPEQTFDYPRIDSTP-WAADFETVRAQLRDFCRERVQDYHQARDFPAQEGTS 237 Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCM 303 LSPYL+IGVLS RQC RL E + + GA WL+ELIWREFY+HL+A P++ Sbjct: 238 SLSPYLAIGVLSARQCVARLYHE--SSMGELSEGAQVWLSELIWREFYQHLVAIEPNLSK 295 Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363 + F+ W ++EW D+ Q W +G TG+PI+DAAMRQLN GWMHNRLRMI ASFL K Sbjct: 296 SRDFVEWGARLEWWNDNEKFQLWCEGKTGYPIVDAAMRQLNQTGWMHNRLRMIVASFLTK 355 Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423 DL +DWR GE YFMS+L+DGD A+NNGGWQW ASTG D PYFRIFNP QG++FDP G Sbjct: 356 DLHIDWRWGERYFMSRLIDGDYAANNGGWQWCASTGCDGQPYFRIFNPVSQGEKFDPNGD 415 Query: 424 FIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478 FIR W+PEL +V + YIH P ++ N S+ YP +VDHK+ TL Y AK Sbjct: 416 FIRRWVPELRSVSSAYIHQPWTYPAVN--SVLYPARLVDHKQEREVTLRLYKTAK 468 >gi|229527954|ref|ZP_04417345.1| deoxyribodipyrimidine photolyase [Vibrio cholerae 12129(1)] gi|229334316|gb|EEN99801.1| deoxyribodipyrimidine photolyase [Vibrio cholerae 12129(1)] Length = 469 Score = 401 bits (1030), Expect = e-109, Method: Compositional matrix adjust. Identities = 215/475 (45%), Positives = 291/475 (61%), Gaps = 12/475 (2%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 + LVW R DLR DN AL AA ++ D V A++IATPEQW QH ++ Q+ I+ L ++ Sbjct: 1 MRLVWFRRDLRSFDNTALTAALNSGD-PVAAMYIATPEQWHQHHLAPIQADLIWRRLAEL 59 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128 Q+ L+ + Y Q ++F + + T++ NR YE++E +RD+ ++ L Sbjct: 60 QQELAALNVPLFYQQVADFQAAAVAVSQLAKTLNATQVLANRDYELDEQQRDQSAQQLLS 119 Query: 129 HRVIC-KSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187 + I +FDD +LPPGS+ + +KV+TPF++A + L Q + PA P Sbjct: 120 EQGITWSAFDDKCVLPPGSVRTKQGEFFKVFTPFKRAWL-TLFQPPVIGKNRPAALWDVP 178 Query: 188 VTPSNI----PRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS 243 + + + FDYP P + + LR FC+E+V Y + RD PA +GTS Sbjct: 179 SAFAELVWHPEQTFDYPRVDSTP-WAADFETVRAQLRDFCRERVQDYHQARDFPAREGTS 237 Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCM 303 LSPYL+IGVLS RQC RL E + + GA WL+ELIWREFY+HL+A P++ Sbjct: 238 SLSPYLAIGVLSARQCVARLYHE--SSMGELSEGAQVWLSELIWREFYQHLVAIEPNLSK 295 Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363 + F+ W ++EW D+ Q W +G TG+PI+DAAMRQLN GWMHNRLRMI ASFL K Sbjct: 296 SRDFVEWGARLEWWNDNEKFQLWCEGKTGYPIVDAAMRQLNQTGWMHNRLRMIVASFLTK 355 Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423 DL +DWR GE YFMS+L+DGD A+NNGGWQW ASTG D PYFRIFNP QG++FDP G Sbjct: 356 DLHIDWRWGERYFMSRLIDGDYAANNGGWQWCASTGCDGQPYFRIFNPVSQGEKFDPNGD 415 Query: 424 FIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478 FIR W+PEL +V + YIH P ++ N S+ YP +VDHK+ TL Y AK Sbjct: 416 FIRRWVPELRSVSSAYIHQPWTYPAVN--SVLYPARLVDHKQEREVTLRLYKTAK 468 >gi|121730224|ref|ZP_01682610.1| deoxyribodipyrimidine photolyase, cyclobutane pyrimidine dimer-specific [Vibrio cholerae V52] gi|147672153|ref|YP_001214921.1| deoxyribodipyrimidine photolyase, cyclobutane pyrimidine dimer-specific [Vibrio cholerae O395] gi|262168985|ref|ZP_06036679.1| deoxyribodipyrimidine photolyase [Vibrio cholerae RC27] gi|121628028|gb|EAX60578.1| deoxyribodipyrimidine photolyase, cyclobutane pyrimidine dimer-specific [Vibrio cholerae V52] gi|146314536|gb|ABQ19076.1| deoxyribodipyrimidine photolyase, cyclobutane pyrimidine dimer-specific [Vibrio cholerae O395] gi|227014689|gb|ACP10898.1| deoxyribodipyrimidine photolyase [Vibrio cholerae O395] gi|262022684|gb|EEY41391.1| deoxyribodipyrimidine photolyase [Vibrio cholerae RC27] Length = 469 Score = 401 bits (1030), Expect = e-109, Method: Compositional matrix adjust. Identities = 214/475 (45%), Positives = 292/475 (61%), Gaps = 12/475 (2%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 + LVW R DLR DN AL AA ++ D V A++IATPEQW QH ++ Q+ I+ L ++ Sbjct: 1 MRLVWFRRDLRSFDNTALTAALNSGD-PVAAMYIATPEQWHQHHLAPIQADLIWRRLAEL 59 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128 Q+ L+ + Y Q ++F + + ++ NR YE++E +RD+ ++ L Sbjct: 60 QQELAALNVPLFYQQVADFQAAAVAVSQLAKTLNAKQVLANRDYELDEQQRDQSAQQLLS 119 Query: 129 HRVIC-KSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187 + I +FDD +LPPGS+ + +KV+TPF++A + L Q + PA P Sbjct: 120 EQGITWSAFDDKCVLPPGSVRTKQGEFFKVFTPFKRAWL-TLFQPPVIGKNRPAALWNVP 178 Query: 188 VTPSNI----PRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS 243 + + + FDYP P + + LR+FC+E+V Y + RD PA +GTS Sbjct: 179 SALAELVWHPEQAFDYPRIDSTP-WAADFETVRAQLREFCRERVQDYHQARDFPAQEGTS 237 Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCM 303 LSPYL+IGVLS RQC RL E + + GA +WL+ELIWREFY+HL+A P++ Sbjct: 238 SLSPYLAIGVLSARQCVARLYHE--SSMGELSEGAQAWLSELIWREFYQHLVAIEPNLSK 295 Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363 + F+ W ++EW D+ Q W +G TG+PI+DAAMRQLN GWMHNRLRMI ASFL K Sbjct: 296 SRDFVEWGARLEWWNDNEKFQLWCEGKTGYPIVDAAMRQLNQTGWMHNRLRMIVASFLTK 355 Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423 DL +DWR GE YFMS+L+DGD A+NNGGWQW ASTG D PYFRIFNP QG++FDP G Sbjct: 356 DLHIDWRWGERYFMSRLIDGDYAANNGGWQWCASTGCDGQPYFRIFNPVSQGEKFDPNGD 415 Query: 424 FIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478 FIR W+PEL +V + YIH P ++ N S+ YP +VDHK+ TL Y AK Sbjct: 416 FIRRWVPELRSVSSAYIHQPWAYPAVN--SVLYPARLVDHKQEREVTLRLYKTAK 468 >gi|328469264|gb|EGF40210.1| deoxyribodipyrimidine photolyase [Vibrio parahaemolyticus 10329] Length = 471 Score = 401 bits (1030), Expect = e-109, Method: Compositional matrix adjust. Identities = 210/475 (44%), Positives = 289/475 (60%), Gaps = 12/475 (2%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 LVW R DLR D+ AL AA ++ V+A F+ATPEQW++H ++ Q+ I L V + Sbjct: 3 LVWFRRDLRTLDHTALKAAL-DTGQPVVACFVATPEQWQEHHMAPMQADLIARRLEHVHQ 61 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130 L++ I Y + FDD + + + + T N YE+NEV D+ + + L +R Sbjct: 62 ELTELNIPLLYKEVPRFDDCTKVICDWADKLNATAAMVNINYEVNEVELDRKVSQALDNR 121 Query: 131 -VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNL----VQADLRSLPVPAIRLT 185 V +F D + P ++LN + +KV+TPF++A +Q V R +P+ +L Sbjct: 122 GVEFHAFHDKCVHAPTTVLNKQGEYFKVFTPFKRAWLQKFSLPTVSKPQRQNELPSAQLA 181 Query: 186 GPVTPSNIPRF-FDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244 + F F YP ++ + + L LR F +E+ Y +RD PAI GTSQ Sbjct: 182 AVKQDAFDADFTFSYPRES-SKAWCASTNDILKQLRTFARERSDGYQMKRDFPAIDGTSQ 240 Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304 LSPYL+IG LSPRQC RL E + G +WL+E+IWREFY+HL+ F P + G Sbjct: 241 LSPYLAIGALSPRQCIARLYAENPQPDLS--EGKATWLSEIIWREFYQHLLVFEPKLVKG 298 Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364 + FI W +KI+W+ D + WK G TG+PI+DAAMRQLN GWMHNRLRMI ASFL KD Sbjct: 299 RGFIDWEDKIQWSYDEQAFECWKTGSTGYPIVDAAMRQLNQTGWMHNRLRMIVASFLAKD 358 Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424 L +DWR GEEYFMS+L+DGD A+NNGGWQW+ASTG D PYFRIFNP QG++FD G F Sbjct: 359 LHIDWRWGEEYFMSKLVDGDFAANNGGWQWSASTGCDGQPYFRIFNPISQGEKFDSDGQF 418 Query: 425 IRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479 +RHW+PE+ +VP +++H P +W + L Y P+VDHK TL + +AK+ Sbjct: 419 VRHWVPEIKSVPNKFVHKPWTW--EGFSLLEYHKPMVDHKVEREITLRLFKSAKE 471 >gi|153835921|ref|ZP_01988588.1| deoxyribodipyrimidine photo-lyase [Vibrio parahaemolyticus AQ3810] gi|149750675|gb|EDM61420.1| deoxyribodipyrimidine photo-lyase [Vibrio parahaemolyticus AQ3810] Length = 471 Score = 400 bits (1029), Expect = e-109, Method: Compositional matrix adjust. Identities = 211/479 (44%), Positives = 292/479 (60%), Gaps = 20/479 (4%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 LVW R DLR D+ AL AA ++ V+A F+ATPEQW++H ++ Q+ I L V + Sbjct: 3 LVWFRRDLRTLDHTALKAAL-DTGQPVVACFVATPEQWQEHHMAPMQADLIARRLEHVHQ 61 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130 L++ I Y + FDD + + + + T + N YE+NEV D+ + + L +R Sbjct: 62 ELTELNIPLLYKEVPRFDDCTKVICDWADKLNATAVMVNINYEVNEVELDRKVSQALDNR 121 Query: 131 -VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLV---------QADLRSLPVP 180 V +F D + P ++LN + +KV+TPF++A +Q Q +L S + Sbjct: 122 GVEFHAFHDKCVHAPTTVLNKQGEYFKVFTPFKRAWLQKFSLPTVSKPQKQNELPSEQLA 181 Query: 181 AIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ 240 A++ G + F YP ++ + + + L LR F +E+ Y +RD PAI Sbjct: 182 AVKQDG----FDADFTFSYPRESSE-AWCASTNDILKQLRTFARERSDGYQMKRDFPAID 236 Query: 241 GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPS 300 GTSQLSPYL+IG LSPRQC RL E + G +WL+E+IWREFY+HL+ F P Sbjct: 237 GTSQLSPYLAIGALSPRQCIARLYAENPQPDLS--EGKATWLSEIIWREFYQHLLVFEPK 294 Query: 301 VCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASF 360 + G+ FI W +KI+W+ D + WK G TG+PI+DAAMRQLN GWMHNRLRMI ASF Sbjct: 295 LVKGRGFIDWEDKIQWSYDEQAFECWKTGTTGYPIVDAAMRQLNQTGWMHNRLRMIVASF 354 Query: 361 LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDP 420 L KDL +DWR GEEYFMS+L+DGD A+NNGGWQW+ASTG D PYFRIFNP QG++FD Sbjct: 355 LTKDLHIDWRWGEEYFMSKLVDGDFAANNGGWQWSASTGCDGQPYFRIFNPISQGEKFDS 414 Query: 421 QGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479 G F+RHW+PE+ +VP ++IH P +W + L Y P+VDHK TL + +AK+ Sbjct: 415 DGQFVRHWVPEIKSVPNKFIHKPWTW--EGFSLLEYHKPMVDHKVEREITLRLFKSAKE 471 >gi|27904772|ref|NP_777898.1| deoxyribodipyrimidine photolyase [Buchnera aphidicola str. Bp (Baizongia pistaciae)] gi|46396630|sp|Q89AJ9|PHR_BUCBP RecName: Full=Deoxyribodipyrimidine photo-lyase; AltName: Full=DNA photolyase; AltName: Full=Photoreactivating enzyme gi|27904170|gb|AAO27003.1| deoxyribodipyrimidine photolyase [Buchnera aphidicola str. Bp (Baizongia pistaciae)] Length = 478 Score = 400 bits (1028), Expect = e-109, Method: Compositional matrix adjust. Identities = 210/480 (43%), Positives = 305/480 (63%), Gaps = 16/480 (3%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M+V+L+W RNDLR++DN AL+ +C N+ + V+A+FIATP+QW +H ++ ++ IY +++ Sbjct: 1 MNVNLMWFRNDLRLSDNSALHFSCRNNASTVLALFIATPKQWERHCLAPKKKMLIYKNIV 60 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 ++K +++ GI+F Y++ +++ +S ++ +C +VT +F+N +YE E +RDK+++K+ Sbjct: 61 ALKKKITELGIIFYYYESTDYLESTNYIIEFCKIHKVTSIFFNLEYEFYERQRDKIIKKK 120 Query: 127 LQHRVICK-SFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185 L+ I F DSVL+ PGSI N +MYK ++ F+ I+ L P P + Sbjct: 121 LKKNNIIINCFHDSVLITPGSIKNSYGKMYKKFSYFKYKCIKQLQLNIPSCFPKPQNKNL 180 Query: 186 GP--VTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS 243 IP F Y + +FPIGE L+ F K Y ++I + TS Sbjct: 181 HDHYSLDFTIPIFHTYLEKFDANIFPIGEDIVYEKLKFFIKYAFNKYNFDQEIFELNSTS 240 Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCM 303 LS +LSIGV+SPRQC L +E+ D++ K + W+NEL+WREFY+HL+ FYP++ Sbjct: 241 MLSAHLSIGVISPRQCVTLLFKEYPDIIHKLEEC--KWINELLWREFYQHLLYFYPNIGQ 298 Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363 + W +I+W+ + + L WKQG TG+PIIDA MRQL +GW+ NRLRMITASFLVK Sbjct: 299 NQSLYHWENRIKWDNNLYYLNLWKQGNTGYPIIDAGMRQLKQLGWISNRLRMITASFLVK 358 Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423 +LL+DWR GEEYFMSQL+DGD ASNNG WQW AS G DS+PYFRIFNP +Q K+FD Sbjct: 359 NLLIDWRKGEEYFMSQLIDGDFASNNGNWQWIASVGTDSMPYFRIFNPMLQSKKFDINAK 418 Query: 424 FIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQSLL 483 FIR ++PEL+NV T IH P N + YP PI++ YY +KK++LL Sbjct: 419 FIRKYIPELSNVSTYNIHNPCDNNKTNKIHSKYPQPIIN-----------YYHSKKKTLL 467 >gi|258622171|ref|ZP_05717197.1| deoxyribodipyrimidine photolyase, cyclobutane pyrimidine dimer-specific [Vibrio mimicus VM573] gi|258585495|gb|EEW10218.1| deoxyribodipyrimidine photolyase, cyclobutane pyrimidine dimer-specific [Vibrio mimicus VM573] Length = 469 Score = 400 bits (1028), Expect = e-109, Method: Compositional matrix adjust. Identities = 213/479 (44%), Positives = 292/479 (60%), Gaps = 20/479 (4%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 + LVW R DLR DN AL A + + V AV++ATP+QW+QH ++ Q+ FI+ L + Sbjct: 1 MKLVWFRRDLRSFDNTALTVAIESGET-VAAVYVATPQQWQQHHLAPIQADFIWRRLAAL 59 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL- 127 Q+ L+ + Y Q ++F ++ ++ ++ NR YE++E +RD E+ L Sbjct: 60 QQELAAINVPLFYQQVADFREAANAVNQLAKALNANQVLANRDYELDEQQRDLRTEQLLA 119 Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187 + ++ +FDD +LPPGS+ + +KV+TPF++A + +L Q + +P P Sbjct: 120 EQGILWSAFDDKCILPPGSVRTKQGEFFKVFTPFKRAWL-SLFQPPV----IPRNHSAAP 174 Query: 188 VTPSN--------IPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAI 239 SN + FDY + +P+ + LR FC+E+V Y + RD PA Sbjct: 175 WDVSNEFSHLVWHTDQIFDYT-RVDSSQWPVEFEVIRTQLRDFCRERVQDYHQWRDFPAR 233 Query: 240 QGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYP 299 +GTS LSPYL+IG LS RQC RL E + GA WL+ELIWREFY+HL+A P Sbjct: 234 EGTSVLSPYLAIGALSARQCVARLYRE--SAMSALSEGAQVWLSELIWREFYQHLVAIEP 291 Query: 300 SVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITAS 359 ++ + F+ W ++EW DS Q W +G TG+PI+DAAMRQLN GWMHNRLRMI AS Sbjct: 292 NISKSRDFLEWGARLEWWNDSEKFQRWCEGNTGYPIVDAAMRQLNQTGWMHNRLRMIVAS 351 Query: 360 FLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFD 419 FL KDL +DWR GE YFMS+L+DGD A+NNGGWQW ASTG D PYFRIFNP QG++FD Sbjct: 352 FLTKDLHIDWRWGERYFMSRLIDGDYAANNGGWQWCASTGCDGQPYFRIFNPVSQGEKFD 411 Query: 420 PQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478 P G FIR W+PEL +V + YIH P ++ N S+ YP P+VDHK+ TL Y AK Sbjct: 412 PNGDFIRRWVPELRSVSSAYIHQPWTYPAVN--SVLYPAPLVDHKQEREVTLRLYKTAK 468 >gi|254224596|ref|ZP_04918212.1| deoxyribodipyrimidine photolyase, cyclobutane pyrimidine dimer-specific [Vibrio cholerae V51] gi|125622659|gb|EAZ50977.1| deoxyribodipyrimidine photolyase, cyclobutane pyrimidine dimer-specific [Vibrio cholerae V51] Length = 469 Score = 400 bits (1027), Expect = e-109, Method: Compositional matrix adjust. Identities = 214/475 (45%), Positives = 290/475 (61%), Gaps = 12/475 (2%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 + LVW R DLR DN AL A ++ D V A++IATPEQW QH ++ Q+ I+ L ++ Sbjct: 1 MRLVWFRRDLRSFDNTALTTALNSGD-PVAAMYIATPEQWHQHHLAPIQADLIWRRLAEL 59 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128 Q+ L+ + Y Q ++F + + T++ NR YE++E +RD+ ++ L Sbjct: 60 QQELAALNVPLFYQQVADFQAAAVAVSQLAKTLNATQVLANRDYELDEQQRDQSAQQLLS 119 Query: 129 HRVIC-KSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187 + I +FDD +LPPGS+ + +KV+TPF++A + L Q + PA P Sbjct: 120 EQGITWSAFDDKCVLPPGSVRTKQGEFFKVFTPFKRAWL-TLFQPPVIGKNRPAALWDVP 178 Query: 188 VTPSNI----PRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS 243 + + + FDYP P + + LR FC+E+V Y + RD PA +GTS Sbjct: 179 SALAELVWHPEQTFDYPRVDSTP-WAADFETVRAQLRDFCRERVQDYHQARDFPAQEGTS 237 Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCM 303 LSPYL+IGVLS RQC RL E + + GA WL+ELIWREFY+HL+A P++ Sbjct: 238 SLSPYLAIGVLSARQCVARLYHE--SSMGELSEGAQVWLSELIWREFYQHLVAIEPNLSK 295 Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363 + F+ W ++EW D+ Q W +G TG+PI+DAAMRQLN GWMHNRLRMI ASFL K Sbjct: 296 SRDFVEWGARLEWWNDNEKFQLWCEGKTGYPIVDAAMRQLNQTGWMHNRLRMIVASFLTK 355 Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423 DL +DWR GE YFMS+L+DGD A+NNGGWQW ASTG D PYFRIFNP QG++FDP G Sbjct: 356 DLHIDWRWGERYFMSRLIDGDYAANNGGWQWCASTGCDGQPYFRIFNPVSQGEKFDPNGD 415 Query: 424 FIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478 FIR W+PEL +V + YIH P ++ N S+ YP +VDHK+ TL Y AK Sbjct: 416 FIRRWVPELRSVSSAYIHQPWTYPAVN--SVLYPARLVDHKQEREVTLRLYKTAK 468 >gi|229526306|ref|ZP_04415710.1| deoxyribodipyrimidine photolyase [Vibrio cholerae bv. albensis VL426] gi|229336464|gb|EEO01482.1| deoxyribodipyrimidine photolyase [Vibrio cholerae bv. albensis VL426] Length = 469 Score = 399 bits (1026), Expect = e-109, Method: Compositional matrix adjust. Identities = 215/475 (45%), Positives = 291/475 (61%), Gaps = 12/475 (2%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 + LVW R DLR DN AL AA ++ D V A++IATPEQW QH ++ Q+ I+ L ++ Sbjct: 1 MRLVWFRRDLRSFDNTALTAALNSGD-PVAAMYIATPEQWHQHHLAPIQADLIWRRLAEL 59 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128 Q+ L+ + Y Q ++F + + T++ NR YE++E +RD+ ++ L Sbjct: 60 QQELAALNVPLFYQQVADFQAAAVAVSQLAKTLNATQVLANRDYELDEQQRDQSAQQFLS 119 Query: 129 HRVICK-SFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187 + I +FDD +LPPGS+ + +KV+TPF++A + L Q + PA P Sbjct: 120 EQGITWFAFDDKCVLPPGSVRTKQGEFFKVFTPFKRAWL-TLFQPPVIGKNRPAALWNVP 178 Query: 188 VTPSNI----PRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS 243 + + + FDYP P + + LR FC+E+V Y + RD PA +GTS Sbjct: 179 SALAELVWHPEQTFDYPRVDSTP-WAADFETVRAQLRDFCRERVQDYHQARDFPAQEGTS 237 Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCM 303 LSPYL+IGVLS RQC RL E + + GA WL+ELIWREFY+HL+A P++ Sbjct: 238 SLSPYLAIGVLSARQCVARLYHE--SSMGELSEGAQVWLSELIWREFYQHLVAIEPNLSK 295 Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363 + F+ W ++EW D+ Q W +G TG+PI+DAAMRQLN GWMHNRLRMI ASFL K Sbjct: 296 SRDFVEWGARLEWWNDNEKFQLWCEGKTGYPIVDAAMRQLNQTGWMHNRLRMIVASFLTK 355 Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423 DL +DWR GE YFMS+L+DGD A+NNGGWQW ASTG D PYFRIFNP QG++FDP G Sbjct: 356 DLHIDWRWGERYFMSRLIDGDYAANNGGWQWCASTGCDGQPYFRIFNPVSQGEKFDPNGD 415 Query: 424 FIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478 FIR W+PEL +V + YIH P ++ N S+ YP +VDHK+ TL Y AK Sbjct: 416 FIRRWVPELRSVSSAYIHQPWTYPAIN--SVLYPARLVDHKQEREVTLRLYKTAK 468 >gi|37676017|ref|NP_936413.1| deoxyribodipyrimidine photolyase [Vibrio vulnificus YJ016] gi|37200557|dbj|BAC96383.1| deoxyribodipyrimidine photolyase [Vibrio vulnificus YJ016] Length = 471 Score = 399 bits (1025), Expect = e-109, Method: Compositional matrix adjust. Identities = 214/484 (44%), Positives = 286/484 (59%), Gaps = 28/484 (5%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M++ LVWLR DLR DN AL A S +V+A F+ATP QWR H ++ Q+ I L Sbjct: 1 MAMKLVWLRRDLRCVDNTALNHAIATSQ-EVVACFVATPLQWRDHHMAPMQADLIARRLA 59 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 + + L+ I Y + ++ S + ++ Q V+++ NR+YE+NE RD+ L R Sbjct: 60 VLAEELNALNIPLLYDEVDDYAQSATRVANWAEQLAVSEVVLNREYEVNERVRDEQLVNR 119 Query: 127 L-QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185 L + +D + PG +LN +KV+TPF+KA L+S P I T Sbjct: 120 LASSEMGVLDVEDKCVQAPGCVLNKQGDYFKVFTPFKKAW--------LKSFIPPQIIKT 171 Query: 186 GPVTPSNIPRF-----------FDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQR 234 P +P F YP Q+ + + + Q LR+FC E+V Y EQR Sbjct: 172 SAAQPVVLPEALQSSLWHEQAPFSYPRQSSE-AWSVDSQQIRETLRRFCHEEVDRYHEQR 230 Query: 235 DIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHL 294 D PA GTS LSPYL+IG +S RQC RL + L +G WL+ELIWREFY HL Sbjct: 231 DFPATAGTSVLSPYLAIGAISVRQCIARLYWQQSYL----SNGREVWLSELIWREFYHHL 286 Query: 295 MAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLR 354 + F P + G+ F+ W + + W + W +G TG+PI+DAAMRQLN GWMHNRLR Sbjct: 287 IHFEPKLVKGQGFVEWEKHLLWPAKPDWFERWCRGETGYPIVDAAMRQLNQTGWMHNRLR 346 Query: 355 MITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQ 414 MI ASFL KDL V+WR+GE+YFM +L+DGD A+NNGGWQW ASTG D PYFRIFNP Q Sbjct: 347 MIVASFLTKDLHVNWRLGEQYFMQKLVDGDFAANNGGWQWCASTGCDGQPYFRIFNPITQ 406 Query: 415 GKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQY 474 G++FDP G F++HWLPEL VP++++H P WL + L+YP P+VDHK+ TL+ Y Sbjct: 407 GEKFDPNGEFVKHWLPELAEVPSKFVHQPWKWL--GHMRLDYPAPMVDHKQEREITLSLY 464 Query: 475 YAAK 478 AK Sbjct: 465 TQAK 468 >gi|183179740|ref|ZP_02957951.1| deoxyribodipyrimidine photolyase, cyclobutane pyrimidine dimer-specific [Vibrio cholerae MZO-3] gi|183013151|gb|EDT88451.1| deoxyribodipyrimidine photolyase, cyclobutane pyrimidine dimer-specific [Vibrio cholerae MZO-3] Length = 469 Score = 399 bits (1025), Expect = e-109, Method: Compositional matrix adjust. Identities = 214/475 (45%), Positives = 290/475 (61%), Gaps = 12/475 (2%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 + LVW R DLR DN AL AA ++ D V A++IATPEQW QH ++ Q+ I+ L ++ Sbjct: 1 MRLVWFRRDLRSFDNTALTAALNSGD-PVAAMYIATPEQWHQHHLAPIQADLIWRRLAEL 59 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128 Q+ L+ + Y Q ++F + + T++ NR YE++E +RD+ ++ L Sbjct: 60 QQELAALNVPLFYQQVADFQAAAVAVSQLAKTLNATQVLANRDYELDEQQRDQSAQQLLS 119 Query: 129 HRVIC-KSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187 + I +FDD +LPPGS+ + +KV+TPF++A + L Q + PA P Sbjct: 120 EQGITWSAFDDKCVLPPGSVRTKQGEFFKVFTPFKRAWL-TLFQPPVIGKNRPAALWNVP 178 Query: 188 VTPSNI----PRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS 243 + + + F YP P + + LR FC+E+V Y + RD PA +GTS Sbjct: 179 SALAELVWHPEQTFGYPRVDSTP-WAADFETVRAQLRDFCRERVQDYHQARDFPAREGTS 237 Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCM 303 LSPYL+IGVLS RQC RL E + + GA WL+ELIWREFY+HL+A P++ Sbjct: 238 SLSPYLAIGVLSARQCVARLYHE--SSMGELSEGAQVWLSELIWREFYQHLVAIEPNLSK 295 Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363 + F+ W ++EW D+ Q W +G TG+PI+DAAMRQLN GWMHNRLRMI ASFL K Sbjct: 296 SRDFVEWGARLEWWNDNEKFQLWCEGKTGYPIVDAAMRQLNQTGWMHNRLRMIVASFLTK 355 Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423 DL +DWR GE YFMS+L+DGD A+NNGGWQW ASTG D PYFRIFNP QG++FDP G Sbjct: 356 DLHIDWRWGERYFMSRLIDGDYAANNGGWQWCASTGCDGQPYFRIFNPVSQGEKFDPNGD 415 Query: 424 FIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478 FIR W+PEL +V + YIH P ++ N S+ YP +VDHK+ TL Y AK Sbjct: 416 FIRRWVPELRSVSSAYIHQPWTYPAVN--SVLYPARLVDHKQEREVTLRLYKTAK 468 >gi|260901113|ref|ZP_05909508.1| deoxyribodipyrimidine photo-lyase [Vibrio parahaemolyticus AQ4037] gi|308109383|gb|EFO46923.1| deoxyribodipyrimidine photo-lyase [Vibrio parahaemolyticus AQ4037] Length = 471 Score = 399 bits (1024), Expect = e-109, Method: Compositional matrix adjust. Identities = 210/479 (43%), Positives = 290/479 (60%), Gaps = 20/479 (4%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 LVW R DLR D+ AL AA ++ V+A F+ATPEQW++H ++ Q+ I L V + Sbjct: 3 LVWFRRDLRTLDHTALKAAL-DTGQPVVACFVATPEQWQEHHMAPMQADLIARRLQHVHQ 61 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130 L++ I + FDD + + + + T N YE+NEV D+ + + L +R Sbjct: 62 ELTELNIPLLCKEVPRFDDCTKVICDWADKLNATAAMVNINYEVNEVELDRKVSQALDNR 121 Query: 131 -VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLV---------QADLRSLPVP 180 V +F D +L P ++LN + +KV+TPF++A +Q Q +L S + Sbjct: 122 GVEFHAFHDKCVLAPTTVLNKQGEYFKVFTPFKRAWLQKFSLPTVSKPQRQNELPSEQLE 181 Query: 181 AIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ 240 A++ G + F YP ++ + + + L LR F +E+ Y +RD PAI Sbjct: 182 AVKQDG----FDADYTFSYPRESSE-AWCASTNDILKQLRTFARERSDGYQMKRDFPAID 236 Query: 241 GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPS 300 GTSQLSPYL+IG LSPRQC RL E + G +WL+E+IWREFY+HL+ F P Sbjct: 237 GTSQLSPYLAIGALSPRQCIARLYAENPQPDLS--EGKATWLSEIIWREFYQHLLVFEPK 294 Query: 301 VCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASF 360 + G+ FI W +KI+W+ D + WK G TG+PI+DAAMRQLN GWMHNRLRMI ASF Sbjct: 295 LVKGRGFIDWEDKIQWSYDEQAFECWKTGTTGYPIVDAAMRQLNQTGWMHNRLRMIVASF 354 Query: 361 LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDP 420 L KDL +DWR GEEYFMS+L+DGD A+NNGGWQW+ASTG D PYFRIFNP QG++FD Sbjct: 355 LTKDLHIDWRWGEEYFMSKLVDGDFAANNGGWQWSASTGCDGQPYFRIFNPISQGEKFDS 414 Query: 421 QGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479 G F+RHW+PE+ VP +++H P +W + L Y P+VDHK TL + +AK+ Sbjct: 415 DGQFVRHWVPEIKRVPNKFVHKPWTW--EGFSLLEYHKPMVDHKVEREITLRLFKSAKE 471 >gi|327485291|gb|AEA79697.1| Deoxyribodipyrimidine photolyase [Vibrio cholerae LMA3894-4] Length = 469 Score = 399 bits (1024), Expect = e-109, Method: Compositional matrix adjust. Identities = 214/475 (45%), Positives = 290/475 (61%), Gaps = 12/475 (2%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 + LVW R DLR DN AL AA ++ D V A++IATPEQW QH ++ Q+ I+ L ++ Sbjct: 1 MRLVWFRRDLRSFDNTALTAALNSGD-PVAAMYIATPEQWHQHHLAPIQADLIWRRLAEL 59 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128 Q+ L+ + Y Q ++F + + ++ NR YE++E +RD+ ++ L Sbjct: 60 QQELAALNVPLFYQQVADFQAAAVAVSQLAKTLNAIQVLANRDYELDEQQRDQSAQQLLS 119 Query: 129 HRVIC-KSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187 + I +FDD +LPPGS+ + +KV+TPF++A + L Q + PA P Sbjct: 120 EQGITWSAFDDKCVLPPGSVRTKQGEFFKVFTPFKRAWL-TLFQPPVIGKNRPAALWDVP 178 Query: 188 VTPSNI----PRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS 243 + + + FDYP P + + LR FC+E+V Y + RD PA +GTS Sbjct: 179 SALAELVWHPEQTFDYPRVDSTP-WAADFETVRAQLRGFCRERVQDYHQARDFPAREGTS 237 Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCM 303 LSPYL+IGVLS RQC RL E + + GA WL+ELIWREFY+HL+A P++ Sbjct: 238 SLSPYLAIGVLSARQCVARLYHE--SSMGELSEGAQVWLSELIWREFYQHLVAIEPNLSK 295 Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363 + F+ W ++EW D+ Q W +G TG+PI+DAAMRQLN GWMHNRLRMI ASFL K Sbjct: 296 SRDFVEWGARLEWWNDNEKFQLWCEGKTGYPIVDAAMRQLNQTGWMHNRLRMIVASFLTK 355 Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423 DL +DWR GE YFMS+L+DGD A+NNGGWQW ASTG D PYFRIFNP QG++FDP G Sbjct: 356 DLHIDWRWGERYFMSRLIDGDYAANNGGWQWCASTGCDGQPYFRIFNPVSQGEKFDPNGD 415 Query: 424 FIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478 FIR W+PEL +V + YIH P ++ N S+ YP +VDHK+ TL Y AK Sbjct: 416 FIRRWVPELRSVSSAYIHQPWTYPAVN--SVLYPARLVDHKQEREVTLRLYKTAK 468 >gi|297579803|ref|ZP_06941730.1| deoxyribodipyrimidine photolyase [Vibrio cholerae RC385] gi|297535449|gb|EFH74283.1| deoxyribodipyrimidine photolyase [Vibrio cholerae RC385] Length = 469 Score = 398 bits (1022), Expect = e-108, Method: Compositional matrix adjust. Identities = 215/475 (45%), Positives = 291/475 (61%), Gaps = 12/475 (2%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 + LVW R DLR DN AL AA ++ D V A++IATPEQW QH ++ Q+ I+ L ++ Sbjct: 1 MRLVWFRRDLRSFDNTALTAALNSGD-PVAAMYIATPEQWHQHHLAPIQADLIWRRLAEL 59 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128 Q+ L+ + Y Q ++F + + T++ NR YE++E +RD+ ++ L Sbjct: 60 QQELAALNVPLFYQQVADFQAAAVAVSQVAKTLNATQVLANRDYELDEQQRDQSAQQLLS 119 Query: 129 HRVIC-KSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187 + I +FDD +LPPGS+ + +KV+TPF++A + L Q + PA P Sbjct: 120 EQGITWSAFDDKCVLPPGSVRTKQGEFFKVFTPFKRAWL-TLFQPPVIGKNRPAALWDVP 178 Query: 188 VTPSNI----PRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS 243 + + + FDYP P + + LR FC+E+V Y + RD PA +GTS Sbjct: 179 SALAELVWHPEQTFDYPRIDSTP-WAADFETVRAQLRDFCRERVQDYHQARDFPAREGTS 237 Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCM 303 LSPYL+IGVLS RQC RL E + + GA WL+ELIWREFY+HL+A P++ Sbjct: 238 SLSPYLAIGVLSARQCVARLYHE--SSMGELSEGAQVWLSELIWREFYQHLVAIEPNLSK 295 Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363 + F+ W ++EW D+ Q W +G TG+PI+DAAMRQLN GWMHNRLRMI ASFL K Sbjct: 296 SRDFVEWGARLEWWNDNEKFQLWCEGKTGYPIVDAAMRQLNQTGWMHNRLRMIVASFLTK 355 Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423 DL +DWR GE YFMS+L+DGD A+NNGGWQW ASTG D PYFRIFNP QG++FDP G Sbjct: 356 DLHIDWRWGERYFMSRLIDGDYAANNGGWQWCASTGCDGQPYFRIFNPVSQGEKFDPNGD 415 Query: 424 FIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478 FIR W+PEL +V + YIH P ++ N S+ YP +VDHK+ TL Y AK Sbjct: 416 FIRRWVPELRSVSSAYIHQPWTYPAVN--SVLYPARLVDHKQEREVTLRLYKTAK 468 >gi|254448088|ref|ZP_05061551.1| deoxyribodipyrimidine photolyase [gamma proteobacterium HTCC5015] gi|198262214|gb|EDY86496.1| deoxyribodipyrimidine photolyase [gamma proteobacterium HTCC5015] Length = 486 Score = 397 bits (1020), Expect = e-108, Method: Compositional matrix adjust. Identities = 205/480 (42%), Positives = 287/480 (59%), Gaps = 12/480 (2%) Query: 12 VWLRNDLRITDNKALYAACHNSDAK---VIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 VW R+DLR DN+AL A ++A+ +IA +IATP+QW +H +SA Q FI L + Sbjct: 9 VWFRSDLRCHDNRALSRAAEQANAQNLPLIAFYIATPKQWLEHDVSALQVDFILRHLPIL 68 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128 Q L++ I F+ C +F E L C + +LF NR+Y +NE++RD+ + + L+ Sbjct: 69 QTQLARYQIPFRVWVCDDFSQVPELLLEQCQNWNIQQLFANREYPVNEIQRDQRVARTLE 128 Query: 129 HRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187 I FDD LL PGS+ YKV+TPF+K + L +AD+ P I P Sbjct: 129 STSIETHFFDDFTLLAPGSVRTGQGDPYKVFTPFKKQCFKQLQEADIAEAPTARIEAEAP 188 Query: 188 V-----TPSNIPRFFDY-PFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQG 241 P ++ F + + ++ ++P GE AL L F + ++++Y ++RD P +G Sbjct: 189 SHFAQSPPESLADFAPHLDTKTLEHLWPAGESAALERLETFAEHRLHHYQQRRDYPNAKG 248 Query: 242 TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSV 301 TS +S YL+IG LSPR GA +W++EL+WR+FY+H++ +P V Sbjct: 249 TSAISAYLAIGSLSPRAAMRAATRANQGEWTSGSEGAQTWISELLWRDFYQHILTAFPRV 308 Query: 302 CMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFL 361 G+ F P TE I W D QAW +G TG PI+DAAMRQL GWMHNRLRM+TA FL Sbjct: 309 SRGRAFQPHTENIVWRDDPEAFQAWCEGRTGIPIVDAAMRQLLQTGWMHNRLRMVTAMFL 368 Query: 362 VKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQ 421 K+LL+DWR GE+YF QL+DG+L +NNGGWQWAASTG D+ PYFRIFNP QG+RFD Sbjct: 369 SKNLLIDWRRGEQYFRRQLIDGELGANNGGWQWAASTGTDAAPYFRIFNPVTQGQRFDKD 428 Query: 422 GTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481 G FIRH++PEL ++P +Y+H P W + L+YP PIVD K + + + A + S Sbjct: 429 GAFIRHYVPELKDLPNKYLHEP--WTHPDADQLDYPQPIVDLKLSRQRAIEVFRQASEHS 486 >gi|119773948|ref|YP_926688.1| deoxyribodipyrimidine photo-lyase [Shewanella amazonensis SB2B] gi|119766448|gb|ABL99018.1| Deoxyribodipyrimidine photo-lyase type I [Shewanella amazonensis SB2B] Length = 475 Score = 397 bits (1019), Expect = e-108, Method: Compositional matrix adjust. Identities = 212/480 (44%), Positives = 287/480 (59%), Gaps = 20/480 (4%) Query: 11 LVWLRNDLRITDNKALYAACHNSDA---KVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67 LVW R DLR DN+AL AC +++A KV A+FIA+P QW++H + RQ F+ A+L Sbjct: 4 LVWFRQDLRTIDNQALTRACEDANARGGKVHALFIASPGQWQRHDMGVRQQRFLLANLNA 63 Query: 68 VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDK-LLEKR 126 + + L+ GI + F + L ++C + ++ +F Q EI+E RRD+ LL+K Sbjct: 64 LGEELASMGIPLSLLKVDFFYQTAAALKAFCKEHGISSIFAGAQIEIDERRRDQALLDKG 123 Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQ-----MYKVYTPFRKALIQNLVQADLRSLPVPA 181 ++ D+ +LPPGS++ + MY+V+TPF + + L +P PA Sbjct: 124 FPLQLT----DEHCMLPPGSVVTQGQRDQGGAMYRVFTPFARRWREIAASRSLWPIPAPA 179 Query: 182 IRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQG 241 T PV + + D +P+G+ AL L +F + + Y E RD PAI G Sbjct: 180 SVAT-PVVFTPFAFWGDINDDPALDKWPVGQDAALEKLSRFRELGMGRYGENRDFPAIDG 238 Query: 242 TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSV 301 TS LSPYL++GV+SPRQC L E+F D+ + S A WLNEL+WREFYRHL+ +P + Sbjct: 239 TSSLSPYLALGVISPRQCLAALLEDFPDVFVNESSPARPWLNELVWREFYRHLLVAFPGL 298 Query: 302 CMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFL 361 M K F P + I W D +AWK G TG+P++DAAMRQLN GWMHNRLRM+ ASFL Sbjct: 299 SMAKNFNPLGDGIRWRNDETEFEAWKHGRTGYPLVDAAMRQLNQTGWMHNRLRMVVASFL 358 Query: 362 VKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQ 421 K LL+DWR GE YF QL+DG LA+NNGGWQWAA TG D+ PYFRIFNP Q ++FDP+ Sbjct: 359 TKHLLIDWRWGERYFREQLIDGCLAANNGGWQWAAGTGCDAQPYFRIFNPMSQSEKFDPE 418 Query: 422 GTFIRHWLPELNNVPTQYIH--APHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479 G FIR +LPEL PT+ +H + D S YP PIV+H +A L+ KK Sbjct: 419 GRFIRKYLPELAQWPTRSLHQASGPGLFD----SSGYPSPIVEHTQARVRALDVMAVMKK 474 >gi|269965348|ref|ZP_06179468.1| deoxyribodipyrimidine photolyase [Vibrio alginolyticus 40B] gi|269829994|gb|EEZ84223.1| deoxyribodipyrimidine photolyase [Vibrio alginolyticus 40B] Length = 471 Score = 395 bits (1014), Expect = e-107, Method: Compositional matrix adjust. Identities = 212/483 (43%), Positives = 282/483 (58%), Gaps = 28/483 (5%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 LVW R DLR D+ AL AA +S V+A FIATPEQWR+H ++ Q+ I L + + Sbjct: 3 LVWFRRDLRTLDHTALKAAL-DSGQPVVACFIATPEQWREHHMAPMQADLIARRLACLNE 61 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL-QH 129 L I F Y + +F D + + + T + N YE+NE D + + L H Sbjct: 62 ELESLNIPFLYKEVPSFSDCTDVISGWAETLEATSVMANIHYEVNERELDTQVSEALASH 121 Query: 130 RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189 + + F D + P ++LN + +KV+TPF++A L +P + Sbjct: 122 DIEFELFHDKCVHAPTTVLNKQGEYFKVFTPFKRAW--------LTQFHMPTVVKPHEQA 173 Query: 190 PSN--------IPRF-----FDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDI 236 P N RF F YP ++ + + L LR+F +E+ Y +RD Sbjct: 174 PLNKKVLEQLESARFNSSFTFSYPRESSEDWLA-STNDILKQLREFARERSDAYQSERDF 232 Query: 237 PAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMA 296 PAI GTSQLSPYL+IG LSPRQC RL E + G +WL+E+IWREFY+HL+ Sbjct: 233 PAIDGTSQLSPYLAIGALSPRQCIARLYAE--NQQNDLTEGKATWLSEIIWREFYQHLLV 290 Query: 297 FYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMI 356 F P + GK FI W +KI+W+ D + WK G TG+PI+DAAMRQLN GWMHNRLRMI Sbjct: 291 FEPKLVKGKGFIDWEDKIQWSYDEKAFERWKTGTTGYPIVDAAMRQLNQTGWMHNRLRMI 350 Query: 357 TASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGK 416 ASFL KDL +DWR GE YFMS+L+DGD A+NNGGWQW+ASTG D PYFRIFNP QG+ Sbjct: 351 VASFLTKDLHIDWRWGEAYFMSKLVDGDFAANNGGWQWSASTGCDGQPYFRIFNPISQGE 410 Query: 417 RFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYA 476 +FD G F+RHW+PE+ +VP +YIH P +W + L Y P+VDHK TL + + Sbjct: 411 KFDANGEFVRHWVPEIKSVPNKYIHKPWTW--EGFSLLEYHKPMVDHKTEREITLQLFKS 468 Query: 477 AKK 479 AK+ Sbjct: 469 AKE 471 >gi|91223275|ref|ZP_01258541.1| deoxyribodipyrimidine photolyase [Vibrio alginolyticus 12G01] gi|91192088|gb|EAS78351.1| deoxyribodipyrimidine photolyase [Vibrio alginolyticus 12G01] Length = 471 Score = 395 bits (1014), Expect = e-107, Method: Compositional matrix adjust. Identities = 212/483 (43%), Positives = 282/483 (58%), Gaps = 28/483 (5%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 LVW R DLR D+ AL AA +S V+A FIATPEQWR+H ++ Q+ I L + + Sbjct: 3 LVWFRRDLRTLDHTALKAAL-DSGHPVVACFIATPEQWREHHMAPMQADLIARRLACLNE 61 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL-QH 129 L I F Y + +F D + + + T + N YE+NE D + + L H Sbjct: 62 ELESLNIPFLYKEVPSFSDCTDVISGWAETLEATSVMANIHYEVNERELDTQVSEALASH 121 Query: 130 RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189 + + F D + P ++LN + +KV+TPF++A L +P + Sbjct: 122 DIEFELFHDKCVHAPTTVLNKQGEYFKVFTPFKRAW--------LTQFHMPTVVKPHEQA 173 Query: 190 PSN--------IPRF-----FDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDI 236 P N RF F YP ++ + + L LR+F +E+ Y +RD Sbjct: 174 PLNKKVLEQLESARFNSSFTFSYPRESSEDWLA-STNDILKQLREFARERSDAYQSERDF 232 Query: 237 PAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMA 296 PAI GTSQLSPYL+IG LSPRQC RL E + G +WL+E+IWREFY+HL+ Sbjct: 233 PAIDGTSQLSPYLAIGALSPRQCIARLYAE--NQQNDLTEGKATWLSEIIWREFYQHLLV 290 Query: 297 FYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMI 356 F P + GK FI W +KI+W+ D + WK G TG+PI+DAAMRQLN GWMHNRLRMI Sbjct: 291 FEPKLVKGKGFIDWEDKIQWSYDEKAFERWKTGTTGYPIVDAAMRQLNQTGWMHNRLRMI 350 Query: 357 TASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGK 416 ASFL KDL +DWR GE YFMS+L+DGD A+NNGGWQW+ASTG D PYFRIFNP QG+ Sbjct: 351 VASFLTKDLHIDWRWGEAYFMSKLVDGDFAANNGGWQWSASTGCDGQPYFRIFNPISQGE 410 Query: 417 RFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYA 476 +FD G F+RHW+PE+ +VP +YIH P +W + L Y P+VDHK TL + + Sbjct: 411 KFDANGEFVRHWVPEIKSVPNKYIHKPWTW--EGFSLLEYHKPMVDHKTEREITLQLFKS 468 Query: 477 AKK 479 AK+ Sbjct: 469 AKE 471 >gi|311693606|gb|ADP96479.1| deoxyribodipyrimidine photolyase [marine bacterium HP15] Length = 467 Score = 394 bits (1011), Expect = e-107, Method: Compositional matrix adjust. Identities = 202/471 (42%), Positives = 280/471 (59%), Gaps = 7/471 (1%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 LVW RNDLR+ DN AL AAC +S+ +V A FI TP+QW++H S + F+ A + Sbjct: 2 TQLVWFRNDLRVADNPALTAACESSE-EVRACFILTPDQWQEHDWSPARVQFVVAHANAL 60 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL- 127 + L++ GI + Q FDDS+ L+S+C + VT L +N +Y +NE +RDK L+ R Sbjct: 61 AEELAKLGIPLSFIQAKRFDDSLGKLESHCEEHGVTALHFNEEYGVNERKRDKALKHRFD 120 Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187 Q + + + D + P G IL Y V+TPF + + + P P R Sbjct: 121 QLGIAVRKYRDQTVAPVGEILTQQNDPYSVFTPFSRRWRSWIEETHPGLFPTPKARGNA- 179 Query: 188 VTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSP 247 V+P I + A +P+ GE A L +F +++ Y E+RD PAI GTSQ+SP Sbjct: 180 VSPEQIDAIPEAFRDAPEPLVATGEDAAHDQLERFLEKRGGAYKEKRDFPAIDGTSQISP 239 Query: 248 YLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPF 307 YL+ GVLS RQC ++ + G +W+ E+ WR+FY +++ +P V M + F Sbjct: 240 YLANGVLSGRQCLIAGRQ--AQGAGGNQEGLGTWITEIAWRDFYINILYHFPRVSMHRAF 297 Query: 308 IPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLV 367 P TE +EWN +AWK G TG PI+DAAMRQLN GWMHNRLRMITA +L K+L + Sbjct: 298 KPETETLEWNNPGDRFEAWKTGNTGVPIVDAAMRQLNQTGWMHNRLRMITAMYLTKNLFI 357 Query: 368 DWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRH 427 DWR+GE YFMS+L+DG LASNNGGWQW+ASTG D+ PYFR+FNP Q +RFDP G FIR Sbjct: 358 DWRLGEAYFMSKLIDGFLASNNGGWQWSASTGTDAAPYFRVFNPVTQSERFDPDGDFIRE 417 Query: 428 WLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478 W+PEL + ++ IH P + + YP IVD K++ + ++ K Sbjct: 418 WVPELAKLDSKRIHDPGA--KGGVIPKGYPRQIVDLKESRKEAIAKFQELK 466 >gi|330722082|gb|EGG99998.1| Deoxyribodipyrimidine photolyase [gamma proteobacterium IMCC2047] Length = 463 Score = 394 bits (1011), Expect = e-107, Method: Compositional matrix adjust. Identities = 210/458 (45%), Positives = 287/458 (62%), Gaps = 6/458 (1%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 + LVWLRNDLR+ DN ALYAACH + A V AV+IATP+QW QH SA + F A+L + Sbjct: 1 MKLVWLRNDLRLDDNPALYAACHGT-APVRAVYIATPKQWLQHDESAAKLGFRSAALTDL 59 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128 + L++ GI F+ Q S F D + L YC + VT L++NR++ ++E RD + +RL Sbjct: 60 KSKLAELGIGFELLQASYFSDIADLLADYCQRHAVTDLYFNREFPLHEQDRDNQVCQRLT 119 Query: 129 HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188 I ++ LL I N Q YKV+TP+ KA ++ L D L P + Sbjct: 120 ALNINCHTSNADLLICAPIQNLQGQPYKVFTPWYKAWLKQLNNQDNTPLTAPKAVGSALN 179 Query: 189 TPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPY 248 +P+N D ++P EQ+AL L +FC+ ++++Y + RD PAI GTS LSPY Sbjct: 180 SPNNEHVKLPNSGAFRDDLWPASEQDALQHLAQFCQRRLHHYSDTRDFPAINGTSTLSPY 239 Query: 249 LSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFI 308 L+ G++SPR+C +++ + + A WL EL WREFYR+LM +P + GKPF Sbjct: 240 LASGLVSPRRCLMAIQQTAFEQGWDWRESA--WLRELGWREFYRYLMISFPHISHGKPFK 297 Query: 309 PWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVD 368 ++ W ++ LL AW+ G TGFPIIDAAMRQL + WMHNRLRM+ ASFL K +L+D Sbjct: 298 TTPQQWPWRENPALLSAWQTGNTGFPIIDAAMRQLVSTSWMHNRLRMLVASFLCKLMLID 357 Query: 369 WRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHW 428 WR GE +FM QL+DGD SNNGGWQW+ASTG D+ P+FRIFNPT Q ++FD +G FIR + Sbjct: 358 WREGERFFMQQLIDGDFTSNNGGWQWSASTGCDASPWFRIFNPTTQSQKFDAEGKFIRKF 417 Query: 429 LPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKA 466 LPEL + + IH P + L + L YP PI+D+K A Sbjct: 418 LPELAELDNKQIHNPSNTLRQ---KLGYPDPIIDYKTA 452 >gi|27367890|ref|NP_763417.1| Deoxyribodipyrimidine photolyase [Vibrio vulnificus CMCP6] gi|27359463|gb|AAO08407.1|AE016813_159 Deoxyribodipyrimidine photolyase [Vibrio vulnificus CMCP6] Length = 471 Score = 393 bits (1010), Expect = e-107, Method: Compositional matrix adjust. Identities = 210/484 (43%), Positives = 286/484 (59%), Gaps = 28/484 (5%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M++ LVWLR DLR DN AL A S +V+A F+ATP QWR H ++ Q+ I L Sbjct: 1 MAMKLVWLRRDLRSVDNTALNHAIATSQ-EVVACFVATPLQWRDHHMAPMQADLIARRLA 59 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINE-VRRDKLLEK 125 + + L+ I Y + ++ S + ++ Q V+++ NR+YE+NE VR ++L+ + Sbjct: 60 VLAEELNALNIPLLYDEVDDYAQSATRVANWAEQLAVSEVVLNREYEVNERVRDEQLVNQ 119 Query: 126 RLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185 + +D + PG +LN +KV+TPF+KA +++ V P I T Sbjct: 120 LASSEIGVLDVEDKCVQAPGCVLNKQGDYFKVFTPFKKAWLKSFVP--------PQIIKT 171 Query: 186 GPVTPSNIPRF-----------FDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQR 234 P +P F YP Q+ + + + Q LR FC E+V Y EQR Sbjct: 172 SAAQPVVLPEALQSSLWHEQAPFSYPRQSSEE-WSVDSQQIRETLRHFCHEEVDRYHEQR 230 Query: 235 DIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHL 294 D PA GTS LSPYL+IG +S RQC RL + L +G WL+ELIWREFY HL Sbjct: 231 DFPATAGTSVLSPYLAIGAISVRQCIARLYWQQSYL----SNGREVWLSELIWREFYHHL 286 Query: 295 MAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLR 354 + F P + G+ F+ W + + W W +G TG+PI+DAAMRQLN GWMHNRLR Sbjct: 287 IHFEPKLVKGQGFVEWEKHLLWPAKPDWFDRWCRGETGYPIVDAAMRQLNQTGWMHNRLR 346 Query: 355 MITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQ 414 MI ASFL KDL V+WR+GE+YFM +L+DGD A+NNGGWQW ASTG D PYFRIFNP Q Sbjct: 347 MIVASFLTKDLHVNWRLGEQYFMQKLVDGDFAANNGGWQWCASTGCDGQPYFRIFNPITQ 406 Query: 415 GKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQY 474 G++FDP G F++HWLPEL VP++++H P +W + L+YP P+VDHK+ TL+ Y Sbjct: 407 GEKFDPNGEFVKHWLPELVEVPSKFVHQPWNW--PGHMQLDYPAPMVDHKQEREITLSLY 464 Query: 475 YAAK 478 AK Sbjct: 465 TQAK 468 >gi|320158160|ref|YP_004190538.1| deoxyribodipyrimidine photolyase [Vibrio vulnificus MO6-24/O] gi|319933472|gb|ADV88335.1| deoxyribodipyrimidine photolyase [Vibrio vulnificus MO6-24/O] Length = 469 Score = 392 bits (1008), Expect = e-107, Method: Compositional matrix adjust. Identities = 208/480 (43%), Positives = 285/480 (59%), Gaps = 28/480 (5%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 LVWLR DLR DN AL A S +V+A F+ATP QWR H ++ Q+ I L + + Sbjct: 3 LVWLRRDLRSVDNTALNHAIATSQ-EVVACFVATPLQWRDHHMAPMQADLIARRLAVLAE 61 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINE-VRRDKLLEKRLQH 129 L+ I Y + ++ S + ++ Q V+++ +NR+YE+NE VR ++L+ + Sbjct: 62 ELNALNIPLLYDEVDDYAQSATRVANWAEQLAVSEVVFNREYEVNERVRDEQLINQLASS 121 Query: 130 RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189 + +D + PG +LN +KV+TPF+KA +++ V P I T Sbjct: 122 EMGVLDVEDKCVQAPGCVLNKQGDYFKVFTPFKKAWLKSFVP--------PQIIKTSAAQ 173 Query: 190 PSNIPRF-----------FDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPA 238 P +P F YP ++ + + + Q LR FC E+V Y EQRD PA Sbjct: 174 PVVLPEALQPSLWHEQAPFSYPRESSE-AWSVDSQQIRETLRHFCHEEVDRYHEQRDFPA 232 Query: 239 IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFY 298 GTS LSPYL+IG +S RQC RL + L +G WL+ELIWREFY HL+ F Sbjct: 233 TAGTSVLSPYLAIGAISVRQCIARLYWQQSYL----SNGREVWLSELIWREFYHHLIHFE 288 Query: 299 PSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITA 358 P + G+ F+ W + + W + W +G TG+PI+DAAMRQLN GWMHNRLRMI A Sbjct: 289 PKLVKGQGFVEWEKHLLWPAKPDWFERWCRGETGYPIVDAAMRQLNQTGWMHNRLRMIVA 348 Query: 359 SFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRF 418 SFL KDL V+WR+GE+YFM +L+DGD A+NNGGWQW ASTG D PYFRIFNP QG++F Sbjct: 349 SFLTKDLHVNWRLGEQYFMQKLVDGDFAANNGGWQWCASTGCDGQPYFRIFNPITQGEKF 408 Query: 419 DPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478 DP G F++HWLPEL VP++++H P +W + L+YP P+VDHK+ TL+ Y AK Sbjct: 409 DPNGEFVKHWLPELAQVPSKFVHQPWNW--PGHMQLDYPAPMVDHKQEREITLSLYTQAK 466 >gi|94501522|ref|ZP_01308040.1| Deoxyribodipyrimidine photolyase [Oceanobacter sp. RED65] gi|94426340|gb|EAT11330.1| Deoxyribodipyrimidine photolyase [Oceanobacter sp. RED65] Length = 478 Score = 389 bits (1000), Expect = e-106, Method: Compositional matrix adjust. Identities = 213/466 (45%), Positives = 281/466 (60%), Gaps = 14/466 (3%) Query: 8 SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67 S + VW R DLR+ DN AL+ A N + IA + +QW +H +S RQ I L Sbjct: 3 SFNAVWFRRDLRVHDNPALFHAMKN--GQCIAFYCLAQKQWDEHQVSLRQRSLIRQQLED 60 Query: 68 VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127 + +SL+ G+ ++F + S Q V +LF N +YE+NEV K + + L Sbjct: 61 LTQSLAALGVPLIVIDTADFKSIPKTFVSVLQQYNVEQLFCNAEYEVNEVALTKNVTEAL 120 Query: 128 QHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNL--VQADLRSLPVPAIRL 184 Q + I C + D L+ PG I+N Q YKV+T F+KA + L DL LP + Sbjct: 121 QQQDIKCHEYHDQCLIQPGVIVNKQDQPYKVFTAFKKAYLAQLDIYMRDLYPLPK---KQ 177 Query: 185 TGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244 P ++I IDP + EQ AL L +FCK+++ Y RDIP++ GTS Sbjct: 178 QAPKVKTDISALQSIAQVDIDP-WQGSEQVALDALDEFCKDRIKAYKRDRDIPSLDGTST 236 Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304 LSPYL+IG LS RQCW ++ ++ KP+ G +W +ELIWR+FYRHL+ F+P VC Sbjct: 237 LSPYLAIGSLSVRQCW-QMSQQVSPSGSKPE-GIATWQSELIWRDFYRHLIYFFPHVCQY 294 Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364 K F T+ + W KD L QAW G TG+P++DAAMRQLN GWMHNRLRM+ A FL K Sbjct: 295 KAFKQETDHLPWKKDQALFQAWCDGRTGYPLVDAAMRQLNQTGWMHNRLRMVAAMFLSKH 354 Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424 L +DWR+GE YFM QL+DGDLASNNGGWQW+ASTG D+VPYFRIFNP Q +RFD +GTF Sbjct: 355 LFIDWRLGEAYFMQQLIDGDLASNNGGWQWSASTGVDAVPYFRIFNPIRQSERFDSKGTF 414 Query: 425 IRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHT 470 +R ++PEL ++ + IH P K L YP PIVDHK+A T Sbjct: 415 LRQYVPELASLDDKRIHNPDPITVKK---LGYPAPIVDHKQAVVQT 457 >gi|163800188|ref|ZP_02194089.1| deoxyribodipyrimidine photolyase [Vibrio sp. AND4] gi|159175631|gb|EDP60425.1| deoxyribodipyrimidine photolyase [Vibrio sp. AND4] Length = 471 Score = 389 bits (1000), Expect = e-106, Method: Compositional matrix adjust. Identities = 208/478 (43%), Positives = 282/478 (58%), Gaps = 18/478 (3%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 LVW R DLR D+ AL AA V+A F++TPEQWR+H +S Q+ I L+ +++ Sbjct: 3 LVWFRRDLRTLDHTALKAALETGQP-VVAGFVSTPEQWREHNMSPMQADLIARRLVLLEE 61 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130 L+ I Y + F D + + + + V + N YE+NE D+ + L Sbjct: 62 ELTGLNIPLIYKEVPKFADVGKVIHQWAVSLNVKSVMANIHYEVNEQALDREVVNLLNES 121 Query: 131 VIC-KSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189 I +F D + P ++LN + +KV+TPF++A + + P P L+ V Sbjct: 122 SITFDAFHDKCVHAPTTVLNKQGEYFKVFTPFKRAWLSQFQMPKVWK-PEPQAALSKEVL 180 Query: 190 PS------NIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS 243 + ++ F YP ++ + + + L LR F +E+ Y +RD PA+ GTS Sbjct: 181 QAVKADRYHVDVSFSYPRESSE-RWHVSTSAILQQLRGFTRERSDAYQAERDFPAVDGTS 239 Query: 244 QLSPYLSIGVLSPRQCWNRLKEE--FVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSV 301 QLSPYL+IG LSPRQC RL E DL G +WL+E+IWREFY+HL+ F P + Sbjct: 240 QLSPYLAIGALSPRQCIARLHAENPHTDL----TEGKATWLSEIIWREFYQHLLVFEPKL 295 Query: 302 CMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFL 361 G+ FI W +KIEW+ D + W G TG+PI+DAAMRQLN GWMHNRLRMI ASFL Sbjct: 296 VKGQGFIQWEDKIEWSYDEVAFERWSNGTTGYPIVDAAMRQLNQTGWMHNRLRMIVASFL 355 Query: 362 VKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQ 421 KDL +DWR GE YFMS+L+DGD A+NNGGWQW+ASTG D PYFRIFNP QG++FD Sbjct: 356 TKDLHIDWRWGEAYFMSKLVDGDFAANNGGWQWSASTGCDGQPYFRIFNPISQGEKFDHD 415 Query: 422 GTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479 GTF+RHW+PE+ VP ++IH P W N L+Y P+VDHK TL + AK+ Sbjct: 416 GTFVRHWVPEIKQVPNKFIHNPWLWSGFN--LLDYHKPMVDHKVEREITLRLFKNAKE 471 >gi|153001581|ref|YP_001367262.1| deoxyribodipyrimidine photo-lyase [Shewanella baltica OS185] gi|151366199|gb|ABS09199.1| Deoxyribodipyrimidine photo-lyase [Shewanella baltica OS185] Length = 500 Score = 389 bits (998), Expect = e-106, Method: Compositional matrix adjust. Identities = 203/481 (42%), Positives = 283/481 (58%), Gaps = 15/481 (3%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIA---VFIATPEQWRQHGISARQSHFIYASLLQ 67 L+W R DLR+ DN+AL AAC + A +A ++IATP QW++H ++ Q FI + Sbjct: 23 LMWFRQDLRLADNQALTAACDWARANGVALKAIYIATPTQWQRHDVAPIQLDFIERHINL 82 Query: 68 VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127 + + L+ GI F+ Q F D ++ YC QQ + ++F + EINE +RD+ + Sbjct: 83 LAQGLASLGIAFELIQLDTFADVPAFISDYCHQQGIDRVFAGSEPEINEQQRDQAC---I 139 Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187 Q + D+ LL PG++LN + MYKV+TPF + + + + LPVPA GP Sbjct: 140 QAGIPLVLTDEHCLLKPGTVLNLSGDMYKVFTPFSRKWREIAARHAILPLPVPAP--LGP 197 Query: 188 VTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSP 247 V P FF++ + ++ GE A IL F ++KV Y + RD PAI GTS +SP Sbjct: 198 VLTEPKPHFFNHVTKVSSELWAAGEGQAKRILSAFIQQKVQDYKQDRDFPAIDGTSSISP 257 Query: 248 YLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPF 307 YL+IGV+SPRQC L F ++++ S A +WLNEL WREFYRHL+ +P + F Sbjct: 258 YLAIGVISPRQCVAALLHHFPEVIVDDTSPARTWLNELTWREFYRHLLVAFPDLSKNHNF 317 Query: 308 IPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLV 367 + ++W + AW +G TG+PI+DAAMRQLN GWMHNRLRM+ ASFL K LL+ Sbjct: 318 NRQADHVQWRNNPQEFAAWCEGRTGYPIVDAAMRQLNQTGWMHNRLRMVVASFLTKHLLI 377 Query: 368 DWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRH 427 DWR GE YF +L+DGDLA+NNGGWQW+A G D+ PYFRIFNP Q ++FDP G+FIR Sbjct: 378 DWRWGERYFRQKLIDGDLAANNGGWQWSAGCGCDAQPYFRIFNPISQSEKFDPDGSFIRK 437 Query: 428 WLPELNNVPTQYIHAPHSWLDKN-------DLSLNYPLPIVDHKKACHHTLNQYYAAKKQ 480 +LPEL + + +H P + + + YP IV+H A L KK Sbjct: 438 YLPELASWGIKQLHQPSTAQTPSLFEQPLFNTKTAYPSAIVEHSAARARALTVLGVLKKA 497 Query: 481 S 481 + Sbjct: 498 T 498 >gi|126175256|ref|YP_001051405.1| deoxyribodipyrimidine photo-lyase [Shewanella baltica OS155] gi|125998461|gb|ABN62536.1| Deoxyribodipyrimidine photo-lyase type I [Shewanella baltica OS155] Length = 505 Score = 386 bits (992), Expect = e-105, Method: Compositional matrix adjust. Identities = 202/481 (41%), Positives = 284/481 (59%), Gaps = 15/481 (3%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIA---VFIATPEQWRQHGISARQSHFIYASLLQ 67 L+W R DLR+ DN+AL AAC + A +A ++IATP QW++H ++ Q FI + Sbjct: 28 LMWFRQDLRLADNQALTAACDWARANGVALKAIYIATPTQWQRHDVAPIQLDFIERHINL 87 Query: 68 VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127 + + L+ GI F+ Q F D ++ YC QQ ++++F + EINE +RD+ + Sbjct: 88 LAQGLASLGITFELIQLDAFADVPAFIGHYCQQQGISRVFAGSEPEINEQQRDQAC---I 144 Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187 Q + D+ LL PG++LN + MYKV+TPF + + + + LPVPA GP Sbjct: 145 QAGIPLVLTDEHCLLKPGTVLNLSGDMYKVFTPFSRKWREIAARHAIFLLPVPAP--LGP 202 Query: 188 VTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSP 247 V P F+ + ++ GE A IL F ++KV Y + RD PAI GTS +SP Sbjct: 203 VLTEPKPHLFNNVTKVSSELWAAGEGQAKRILSAFIQQKVQDYKQDRDFPAIDGTSSISP 262 Query: 248 YLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPF 307 YL+IGV+SPRQC L +F ++++ S A +WLNEL WREFYRHL+ +P + F Sbjct: 263 YLAIGVISPRQCVAALLHDFPEVIVDDTSPARTWLNELTWREFYRHLLVAFPDLSKNHNF 322 Query: 308 IPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLV 367 + ++W + AW +G TG+PI+DAAMRQLN GWMHNRLRM+ ASFL K LL+ Sbjct: 323 NRQADHVQWRNNPQEFAAWCEGRTGYPIVDAAMRQLNQTGWMHNRLRMVVASFLTKHLLI 382 Query: 368 DWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRH 427 DWR GE YF +L+DGDLA+NNGGWQW+A G D+ PYFRIFNP Q ++FDP G+FIR Sbjct: 383 DWRWGERYFRQKLIDGDLAANNGGWQWSAGCGCDAQPYFRIFNPMSQSEKFDPDGSFIRK 442 Query: 428 WLPELNNVPTQYIHAPHSWLDKN-------DLSLNYPLPIVDHKKACHHTLNQYYAAKKQ 480 +LPEL + + +H P + + ++ YP IV+H A L KK Sbjct: 443 YLPELASWGIKQLHQPSTAQTPSLFEQPLFNIKTAYPSAIVEHSAARARALTVLGVLKKA 502 Query: 481 S 481 + Sbjct: 503 A 503 >gi|127512408|ref|YP_001093605.1| deoxyribodipyrimidine photo-lyase [Shewanella loihica PV-4] gi|126637703|gb|ABO23346.1| Deoxyribodipyrimidine photo-lyase type I [Shewanella loihica PV-4] Length = 478 Score = 385 bits (990), Expect = e-105, Method: Compositional matrix adjust. Identities = 205/478 (42%), Positives = 281/478 (58%), Gaps = 20/478 (4%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 L+WLR D R+ DN AL A + A+FIATP QW+QH ++ ++ I L + Sbjct: 4 LLWLRRDFRLHDNPALSEAVRLRVKQ--ALFIATPAQWQQHDMAPIKADLIRRHLELMAG 61 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130 L++ GI ++F D + L YC V L N + E++E RDK + + Sbjct: 62 ELAEYGIELVILSATDFSDQVRVLCDYCRDHGVKLLLANSEPELDEQERDKQV---MAAG 118 Query: 131 VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPA----IRLTG 186 + + + + +LPPGS+LN +M+KV+TPF+KA ++ + + +P PA ++ G Sbjct: 119 IDLRLWQNDTILPPGSVLNQQGEMFKVFTPFKKAWLKCVAAKGIECVPTPAKSTPVKSIG 178 Query: 187 PV----------TPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDI 236 TP + DYP +P EQ +L F ++K+ Y E+RD Sbjct: 179 DAQAASQLPQQPTPQSSSINLDYPL-VDSGRWPDSEQVMGQLLPHFWQDKLLNYGERRDF 237 Query: 237 PAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMA 296 PAI+GTS LSPYL+IG +S R +L + +++ + GAF+WLNELIWR+FY+HL+ Sbjct: 238 PAIKGTSGLSPYLAIGAISSRWLALQLVQRHPEVIYDTQHGAFTWLNELIWRDFYKHLLF 297 Query: 297 FYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMI 356 YP + G F P E + W + QAW +G TG+PI+DAAM+QL GWMHNRLRMI Sbjct: 298 HYPELIKGGSFQPKYESLPWPNNEAHFQAWCEGRTGYPIVDAAMKQLRRTGWMHNRLRMI 357 Query: 357 TASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGK 416 ASFL K LLVDW GE +FM QL+DGD ++NNGGWQWAASTG D+ PYFRIFNP Q + Sbjct: 358 VASFLTKHLLVDWHKGERFFMQQLIDGDFSANNGGWQWAASTGCDAQPYFRIFNPITQSQ 417 Query: 417 RFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQY 474 +FDP+G FIR +LPEL VP + IH PH +L + YP PIVDHK A L Y Sbjct: 418 KFDPRGEFIRKYLPELREVPDKQIHFPHDYLASQGKAEIYPAPIVDHKAARQRALAFY 475 >gi|330961741|gb|EGH62001.1| deoxyribodipyrimidine photolyase [Pseudomonas syringae pv. maculicola str. ES4326] Length = 481 Score = 384 bits (987), Expect = e-104, Method: Compositional matrix adjust. Identities = 200/472 (42%), Positives = 278/472 (58%), Gaps = 8/472 (1%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 + L+WLR+DLR+ DN AL AA +AV++ +P QWR H + + F +L+++ Sbjct: 1 MQLIWLRSDLRVHDNTALTAAMER--GPTLAVYLLSPAQWRSHDDADCKVDFWLRNLVEL 58 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128 + +L + + Q +D + E L + C Q +V L+ N +Y INE RRD ++K L+ Sbjct: 59 EAALGKLNVPLLIRQADTWDKAPEVLSTLCQQFKVEGLYLNEEYGINETRRDLAVQKMLE 118 Query: 129 HR-VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187 V S+ D +L PGSIL ++V+T F+K L +A + +PA + Sbjct: 119 EAGVQVNSYLDQLLFKPGSILTKTGNYFQVFTQFKKVCYTRLHEA-THPVRMPAAQQALS 177 Query: 188 VTPSNIP---RFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244 +T +P + F P Q + ++P GE A + F E++ YY ++RD PA GTSQ Sbjct: 178 ITSDPVPDQVKGFATPSQTLRALWPAGEGEAKRRMDAFADEQISYYKDERDFPAKPGTSQ 237 Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304 LS YL+ GV+SPRQC + G +W+NEL+WREFY+H + YP V Sbjct: 238 LSAYLAAGVISPRQCLHAALSSNHGEFETGDVGTVTWINELLWREFYKHTLVGYPRVSRH 297 Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364 + F P TE ++W L AW++ TG PIIDAAMRQL GWMHNRLRM+ A FL K+ Sbjct: 298 RAFRPETEALKWRDAPDELLAWQEARTGLPIIDAAMRQLLETGWMHNRLRMVVAMFLTKN 357 Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424 LL+DWR GE +FM L+DGDLASNNGGWQW++STG DS PYFRIFNP Q +RFDP+G F Sbjct: 358 LLIDWREGERFFMRHLIDGDLASNNGGWQWSSSTGTDSAPYFRIFNPLSQSERFDPEGVF 417 Query: 425 IRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYA 476 I+ WLPEL N+ + IH P S ++ +YP PIVD K+ L + A Sbjct: 418 IKRWLPELANLNKKQIHDPSSMGGLFGVA-DYPKPIVDLSKSRARALAAFKA 468 >gi|217972489|ref|YP_002357240.1| Deoxyribodipyrimidine photo-lyase [Shewanella baltica OS223] gi|217497624|gb|ACK45817.1| Deoxyribodipyrimidine photo-lyase [Shewanella baltica OS223] Length = 499 Score = 384 bits (986), Expect = e-104, Method: Compositional matrix adjust. Identities = 201/480 (41%), Positives = 284/480 (59%), Gaps = 14/480 (2%) Query: 11 LVWLRNDLRITDNKALYAAC---HNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67 L+W R DLR+ DN+AL AAC + + A++IATP QW++H ++ Q FI + Sbjct: 23 LMWFRQDLRLADNQALSAACDWARENGVALKAIYIATPTQWQRHDVAPIQLDFIERHINL 82 Query: 68 VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127 + + L+ GI+F+ Q F D ++ YC QQ ++++F + EINE +RD+ + Sbjct: 83 LAQGLASLGIIFELIQLDTFADVPAFISDYCQQQGISRVFAGSEPEINEQQRDQAC---I 139 Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187 Q + ++ LL PG++LN + MYKV+TPF + + + + LPVPA GP Sbjct: 140 QVGIPLVLTEEHCLLKPGTVLNLSGDMYKVFTPFSRKWREIAARHAILPLPVPAP--LGP 197 Query: 188 VTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSP 247 V P F+ + ++ GE A IL F ++KV Y + RD P+I GTS +SP Sbjct: 198 VLTEPKPHLFNNVTKVSSELWAAGEGQAKRILSAFIQQKVQDYKQDRDFPSIDGTSSISP 257 Query: 248 YLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPF 307 YL+IGV+SPRQC L +F ++++ S A +WLNEL WREFYRHL+ +P + F Sbjct: 258 YLAIGVVSPRQCVAALLHDFPEVIVDDTSPARTWLNELTWREFYRHLLVAFPDLSKNHNF 317 Query: 308 IPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLV 367 + ++W + AW +G TG+PI+DAAMRQLN GWMHNRLRM+ ASFL K LL+ Sbjct: 318 NRQADHVQWRNNPQEFAAWCEGRTGYPIVDAAMRQLNQTGWMHNRLRMVVASFLTKHLLI 377 Query: 368 DWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRH 427 DWR GE YF +L+DGDLA+NNGGWQW+A G D+ PYFRIFNP Q ++FDP G+FIR Sbjct: 378 DWRWGERYFRQKLIDGDLAANNGGWQWSAGCGCDAQPYFRIFNPMSQSEKFDPDGSFIRK 437 Query: 428 WLPELNNVPTQYIHAPH-----SWLDKNDLS-LNYPLPIVDHKKACHHTLNQYYAAKKQS 481 +LPEL + + +H P S D+ + YP IV+H A L KK + Sbjct: 438 YLPELASWGIKQLHQPSTAQTPSLFDQPLFTKTAYPSAIVEHSAARSRALTVLGVLKKAA 497 >gi|117919615|ref|YP_868807.1| deoxyribodipyrimidine photo-lyase type I [Shewanella sp. ANA-3] gi|117611947|gb|ABK47401.1| Deoxyribodipyrimidine photo-lyase type I [Shewanella sp. ANA-3] Length = 493 Score = 384 bits (985), Expect = e-104, Method: Compositional matrix adjust. Identities = 209/476 (43%), Positives = 282/476 (59%), Gaps = 21/476 (4%) Query: 4 TTAMSVHLVWLRNDLRITDNKALYAAC----HNSDAKVIAVFIATPEQWRQHGISARQSH 59 T A L+W R DLR+TDN+AL AAC AK+ A++IATP QW H ++ Q Sbjct: 6 TPAAKHALMWFRQDLRLTDNQALTAACDWVRQAPGAKLRAIYIATPNQWLSHDMAPIQID 65 Query: 60 FIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRR 119 FI + + + L+ GI F+ Q +F + +L SYC + V ++F R+ EINE +R Sbjct: 66 FIQRHVNLLAQGLASLGIEFELIQLDSFKEVPAFLASYCEKLGVERVFAGREPEINEQKR 125 Query: 120 DKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPV 179 D+ L + D+ LLPPG++LN + MYKV+TPF + + + + L V Sbjct: 126 DQAC---LDTGIPLVLSDEHCLLPPGTVLNLSGDMYKVFTPFSRKWREIAAKRAIFPLAV 182 Query: 180 PAIRLTGPVTPSNIPRFFDYPFQAIDPM-----FPIGEQNALHILRKFCKEKVYYYVEQR 234 PA GP+ P P F FQ+ + + GE A IL F K+KV Y + R Sbjct: 183 PAP--LGPMLPEPKPISFKERFQSTSKLTSSEQWAAGEGQAKRILTAFIKQKVQDYKQDR 240 Query: 235 DIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHL 294 D PA+ GTS +SPYL++GVLSPRQC L F D+++ S +WLNELIWREFYRHL Sbjct: 241 DFPALDGTSVISPYLALGVLSPRQCIAALLGRFPDVIVDDTSPGRTWLNELIWREFYRHL 300 Query: 295 MAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLR 354 + +P + G F + ++W + AW +G TG+PI+DAAMRQLN GWMHNRLR Sbjct: 301 LVAFPDLSKGHNFNRQADHVQWRNNQAEFLAWCEGKTGYPIVDAAMRQLNQTGWMHNRLR 360 Query: 355 MITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQ 414 M+ ASFL K LL+DWR GE YF L+DGDLA+NNGGWQW+A G D+ PYFRIFNP Q Sbjct: 361 MVVASFLTKHLLIDWRWGERYFRQHLIDGDLAANNGGWQWSAGCGCDAQPYFRIFNPISQ 420 Query: 415 GKRFDPQGTFIRHWLPELNNVPTQYIHAPH-----SWLDKNDLSLN--YPLPIVDH 463 ++FDP G+FIR +LPEL + + +H P+ S + L + YP IV+H Sbjct: 421 SEKFDPDGSFIRKYLPELASWGIKRLHQPNMQKTPSLFEAPMLESDSAYPCAIVEH 476 >gi|330887853|gb|EGH20514.1| deoxyribodipyrimidine photolyase [Pseudomonas syringae pv. mori str. 301020] Length = 482 Score = 383 bits (984), Expect = e-104, Method: Compositional matrix adjust. Identities = 198/472 (41%), Positives = 278/472 (58%), Gaps = 7/472 (1%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 + L+WLR+DLR+ DN AL AA +AV++ +P QWR H + + F +L+++ Sbjct: 1 MQLIWLRSDLRVHDNTALTAAMER--GPTLAVYLLSPAQWRSHDDADCKVDFWLRNLVEL 58 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128 +K+L + + +D + E L + C Q +V L N++Y INE RRD+ ++K L+ Sbjct: 59 EKALGALNVPLLIREADTWDQAPEVLSTLCTQLKVEGLHLNQEYGINETRRDQAVQKALE 118 Query: 129 HR-VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187 V S+ D +L PGSIL A ++V+T F+K + QA + + P + + Sbjct: 119 KAGVQVTSYLDQLLFKPGSILTKAGNYFQVFTQFKKVCYNRMHQAMPQPVRTPKAQQSLS 178 Query: 188 VTPSNIP---RFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244 + +IP F P +A+ ++P GE A + F ++ YY +RD PA GTSQ Sbjct: 179 IKSDSIPDQVEGFATPSKALRDLWPAGEAEARRRMATFADAQISYYKTERDFPAKPGTSQ 238 Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304 LS YL+ GV+SPRQC + G +W+NEL+WREFY+H + YP V Sbjct: 239 LSAYLAAGVISPRQCLHAALGSNQGEFETGDVGTVTWINELLWREFYKHTLVGYPRVSRH 298 Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364 + F P TE ++W L AW++ TG PIIDAAMRQL GWMHNRLRM+ A FL K+ Sbjct: 299 RAFRPETEALKWRDAPEELLAWQEARTGLPIIDAAMRQLLETGWMHNRLRMVVAMFLTKN 358 Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424 LL+DWR GE +FM L+DGDLASNNGGWQW++STG DS PYFRIFNP Q +RFDP+G F Sbjct: 359 LLIDWREGERFFMRHLIDGDLASNNGGWQWSSSTGTDSAPYFRIFNPLSQSERFDPEGLF 418 Query: 425 IRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYA 476 I+ WLPEL ++ + IH P S + + +YP PIVD K+ L + A Sbjct: 419 IKRWLPELADLNKKQIHDPAS-IGGLFGAADYPKPIVDLSKSRARALAAFKA 469 >gi|86144852|ref|ZP_01063184.1| putative deoxyribodipyrimidine photolyase [Vibrio sp. MED222] gi|85837751|gb|EAQ55863.1| putative deoxyribodipyrimidine photolyase [Vibrio sp. MED222] Length = 481 Score = 383 bits (983), Expect = e-104, Method: Compositional matrix adjust. Identities = 201/475 (42%), Positives = 292/475 (61%), Gaps = 25/475 (5%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 ++W+R DLRI DN AL +A N + IAVFI+TP+QW+QH ++ ++ FIY L Q + Sbjct: 4 ILWIRRDLRIHDNPALVSAVENGVS--IAVFISTPQQWQQHHLAPIKADFIYRHLKQFES 61 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130 L++ GI + + ++F+D L + C Q T ++ N + E++E RDK L + Sbjct: 62 QLAEFGITLLHLKATDFNDQAIQLINLCKQVDATYVYANSEPEVDEQLRDKHL---IASG 118 Query: 131 VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV-- 188 + K D +LP GS+LN +M+KV+TPF+ A ++ + + P P + TG Sbjct: 119 IKLKITDCDTILPLGSVLNKQGEMFKVFTPFKNAWLKEVQAKGIICSPTP-VHSTGSAQA 177 Query: 189 ---------TPSNIPRF-------FDYPFQAIDP-MFPIGEQNALHILRKFCKEKVYYYV 231 PS + + +D+ F D +P+ + ++ F KV Y Sbjct: 178 GSSETDSLQNPSQLKQSLSGFSGEYDFEFPRTDSERWPLSQDVLESVIPNFLANKVNDYS 237 Query: 232 EQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFY 291 RDIP+++GTS LSPYL+IG +SPR +L ++ DLL + AFSWLNELIWR+FY Sbjct: 238 RLRDIPSVKGTSGLSPYLTIGAVSPRWLAIQLIQQQPDLLFDTQLPAFSWLNELIWRDFY 297 Query: 292 RHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHN 351 +HLM +P + G F ++W D+ +AW +G TG+P++DAAMRQL GWMHN Sbjct: 298 KHLMFHHPILVKGANFQQKYNGLDWYHDNPSFKAWCEGRTGYPLVDAAMRQLVETGWMHN 357 Query: 352 RLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNP 411 RLRM+ ASFL K LL+DWR GE +FMS L+DGD ++NNGGWQWA+STG D+ PYFRIFNP Sbjct: 358 RLRMVVASFLTKHLLIDWRWGERFFMSHLIDGDFSANNGGWQWASSTGCDAQPYFRIFNP 417 Query: 412 TIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKA 466 Q ++FDP+G FIR ++PEL N+P +++H PH ++ KN + Y PIV+HK+A Sbjct: 418 ITQSEKFDPKGIFIRKYIPELQNIPDKHVHFPHDFIAKNGIDSEYWQPIVEHKEA 472 >gi|329894045|ref|ZP_08270030.1| Deoxyribodipyrimidine photolyase [gamma proteobacterium IMCC3088] gi|328923217|gb|EGG30537.1| Deoxyribodipyrimidine photolyase [gamma proteobacterium IMCC3088] Length = 467 Score = 382 bits (982), Expect = e-104, Method: Compositional matrix adjust. Identities = 193/468 (41%), Positives = 276/468 (58%), Gaps = 4/468 (0%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M+ HLVW R DLR+ DN AL+ AC + +A VIA+F ATP+QWR H ++ + F++ +L Sbjct: 1 MTRHLVWFRQDLRVYDNTALWHACLDPEADVIALFCATPQQWRLHDMAPVRERFLWRNLT 60 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 +++ L + I C F+D ++ + + C VT L+ N +Y +NE +RD+ + + Sbjct: 61 ALKERLGELNIPLVVKHCQTFEDCVQDVPTLCEALGVTNLYANCEYPVNEQKRDRAIREA 120 Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 L +V C D + P G +L Y V++PF++A I+ P P R Sbjct: 121 LADKVSCHWHHDFGIKPLG-LLTKTGNPYTVFSPFKRAWIERWRADPAPIYPAPEPRRCS 179 Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246 P + QA+D +P GE A++ L FC++++ +Y +RD+PA GTS+LS Sbjct: 180 AAVPGS--ELLASDKQAMDQFWPAGEDAAMNRLAHFCEDRIDHYKAKRDLPAEPGTSELS 237 Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP 306 PYL+ GV+SPR C + + + + G +W++ELIWR+FY H++ YP V M + Sbjct: 238 PYLAAGVISPRVCLDAAIRANRGDIHEGRQGPDTWISELIWRDFYIHILDTYPRVSMNRC 297 Query: 307 FIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLL 366 F EKI W AW +G TG+PI+DAAMRQL GWMHNRLRM+ A FL K LL Sbjct: 298 FRVEGEKIPWRNAPEDFAAWCEGRTGYPIVDAAMRQLVQTGWMHNRLRMLVAMFLTKQLL 357 Query: 367 VDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIR 426 +DWR GE +FM L+DGDL +NNGGWQWAASTG D+ PYFRIFNP Q ++FD G FIR Sbjct: 358 IDWREGERFFMQHLIDGDLGANNGGWQWAASTGTDAAPYFRIFNPITQSQKFDASGAFIR 417 Query: 427 HWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQY 474 ++PEL + + IH P L + L+ YP P+V+ K A L + Sbjct: 418 RFVPELRELSDKDIHMPAP-LMRQSLASAYPEPVVELKFARERALAAF 464 >gi|120555269|ref|YP_959620.1| deoxyribodipyrimidine photo-lyase [Marinobacter aquaeolei VT8] gi|120325118|gb|ABM19433.1| deoxyribodipyrimidine photo-lyase type I [Marinobacter aquaeolei VT8] Length = 463 Score = 382 bits (982), Expect = e-104, Method: Compositional matrix adjust. Identities = 199/472 (42%), Positives = 268/472 (56%), Gaps = 13/472 (2%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 LVW RNDLR+ DN AL AAC + + V A F+ TP+QW +H SA + F+ + Sbjct: 2 TQLVWFRNDLRLADNPALTAACQSGE-PVRACFVVTPQQWLEHDWSAARVRFVLEHANAL 60 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL- 127 + L++ G+ + F D + L +C + + +N +Y INE RRDK L RL Sbjct: 61 ARELAELGVPLTFLNAERFSDGSDALLQFCKDSDIADVHFNEEYGINERRRDKALRDRLV 120 Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187 + + D + P G IL + Y V+TPF + + + P PA + Sbjct: 121 DFGIRVSKYRDQTVAPVGQILTQQNEPYSVFTPFSRRWRSWIEETRPTLHPRPAA-IGNA 179 Query: 188 VTPSNIPRFFDYPFQ-AIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246 V P PF+ A +P+ P GE A L F E+ Y + RD PA+ GTSQLS Sbjct: 180 VKPEQTDTL-PAPFRDAPEPLVPTGEDAAHEQLEAFLTERAKDYKDNRDFPALDGTSQLS 238 Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP 306 PYL+ GVLS RQC K+ + G +W+NE+ WR+FY H++ YP V MG+ Sbjct: 239 PYLANGVLSGRQCLIAAKQSGLS-----GEGVETWINEIAWRDFYIHILYHYPRVSMGRA 293 Query: 307 FIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLL 366 F TE + WN +AWK+G TG PI+DAAMRQL GWMHNRLRMITA FL K+L Sbjct: 294 FKEETEALAWNTPGEHFEAWKEGRTGIPIVDAAMRQLKATGWMHNRLRMITAMFLTKNLF 353 Query: 367 VDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIR 426 +DWR+GE +FM L+DG LASNNGGWQW+ASTG D+ PYFR+FNP Q +RFDP+G FIR Sbjct: 354 IDWRLGEAWFMQNLVDGFLASNNGGWQWSASTGTDAAPYFRVFNPVTQSERFDPKGEFIR 413 Query: 427 HWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478 +W+PEL + + IH P + YP PIVD K++ + ++ A K Sbjct: 414 NWVPELAKLDNKRIHDPSR---GGVIPKGYPRPIVDLKESRKEAIARFQALK 462 >gi|304410099|ref|ZP_07391718.1| Deoxyribodipyrimidine photo-lyase [Shewanella baltica OS183] gi|307302189|ref|ZP_07581947.1| Deoxyribodipyrimidine photo-lyase [Shewanella baltica BA175] gi|304351508|gb|EFM15907.1| Deoxyribodipyrimidine photo-lyase [Shewanella baltica OS183] gi|306914227|gb|EFN44648.1| Deoxyribodipyrimidine photo-lyase [Shewanella baltica BA175] Length = 503 Score = 382 bits (982), Expect = e-104, Method: Compositional matrix adjust. Identities = 201/480 (41%), Positives = 282/480 (58%), Gaps = 14/480 (2%) Query: 11 LVWLRNDLRITDNKALYAAC---HNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67 L+W R DLR+ DN+AL AAC + + A++IATP QW++H ++ Q FI + Sbjct: 28 LMWFRQDLRLADNQALSAACDWARENGVALKAIYIATPTQWQRHDVAPIQLDFIERHINL 87 Query: 68 VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127 + + L+ GI F+ Q F D ++ YC QQ ++++F + EINE +RD+ + Sbjct: 88 LAQGLASLGITFELIQLDTFADVPAFISDYCQQQGISRVFAGSEPEINEQQRDQAC---I 144 Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187 Q + ++ LL PG++LN + MYKV+TPF + + + + LPVPA GP Sbjct: 145 QAGIPLVLTEEHCLLKPGTVLNLSGDMYKVFTPFSRKWREIAARHAILPLPVPAP--LGP 202 Query: 188 VTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSP 247 V P F+ + ++ GE A IL F ++KV Y + RD PAI GTS +SP Sbjct: 203 VLTEPKPHLFNNVIKVSSELWAAGEGQAKRILSAFIQQKVQDYKQDRDFPAIDGTSSISP 262 Query: 248 YLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPF 307 YL+IGV+SPRQC L +F ++++ S A +WLNEL WREFYRHL+ +P + F Sbjct: 263 YLAIGVVSPRQCVAALLHDFPEVIVDDTSPARTWLNELTWREFYRHLLVAFPDLSKNHNF 322 Query: 308 IPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLV 367 + ++W + AW +G TG+PI+DAAMRQLN GWMHNRLRM+ ASFL K LL+ Sbjct: 323 NRQADHVQWRNNPQEFAAWCEGRTGYPIVDAAMRQLNQTGWMHNRLRMVVASFLTKHLLI 382 Query: 368 DWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRH 427 DWR GE YF +L+DGDLA+NNGGWQW+A G D+ PYFRIFNP Q ++FDP G+FIR Sbjct: 383 DWRWGERYFRQKLIDGDLAANNGGWQWSAGCGCDAQPYFRIFNPMSQSEKFDPDGSFIRK 442 Query: 428 WLPELNNVPTQYIHAPH-----SWLDKNDLS-LNYPLPIVDHKKACHHTLNQYYAAKKQS 481 +LPEL + + +H S D+ + YP IV+H A L KK + Sbjct: 443 YLPELASWGIKQLHQSSTAQTPSLFDQPLFTKTAYPSAIVEHSAARARALTVLGVLKKAA 502 >gi|257482020|ref|ZP_05636061.1| deoxyribodipyrimidine photolyase [Pseudomonas syringae pv. tabaci ATCC 11528] gi|330988593|gb|EGH86696.1| deoxyribodipyrimidine photolyase [Pseudomonas syringae pv. lachrymans str. M301315] Length = 482 Score = 382 bits (981), Expect = e-104, Method: Compositional matrix adjust. Identities = 197/472 (41%), Positives = 277/472 (58%), Gaps = 7/472 (1%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 + L+WLR+DLR+ DN AL AA +AV++ +P QWR H + + F +L+++ Sbjct: 1 MQLIWLRSDLRVHDNTALTAAMER--GPTLAVYLLSPAQWRSHDDADCKVDFWLRNLVEL 58 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128 +K+L + + +D + E L + C Q +V L N++Y INE RRD+ ++K L+ Sbjct: 59 EKALGALNVPLLIREADTWDQAPEVLSTLCTQFKVEGLHLNQEYGINETRRDQAVQKALE 118 Query: 129 HR-VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187 V S+ D +L PGSIL ++V+T F+K + QA + + P + + Sbjct: 119 KAGVQVTSYLDQLLFKPGSILTKTGNYFQVFTQFKKVCYNRMHQAMPQPVRTPKAQQSLS 178 Query: 188 VTPSNIP---RFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244 + +IP F P +A+ ++P GE A + F ++ YY +RD PA GTSQ Sbjct: 179 IKSDSIPDQVEGFATPSKALRDLWPAGEAEARRRMATFADAQISYYKTERDFPAKPGTSQ 238 Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304 LS YL+ GV+SPRQC + G +W+NEL+WREFY+H + YP V Sbjct: 239 LSAYLAAGVISPRQCLHAALGSNQGEFETGDVGTVTWINELLWREFYKHTLVGYPRVSRH 298 Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364 + F P TE ++W L AW++ TG PIIDAAMRQL GWMHNRLRM+ A FL K+ Sbjct: 299 RAFRPETEALKWRDAPEELLAWQEARTGLPIIDAAMRQLLETGWMHNRLRMVVAMFLTKN 358 Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424 LL+DWR GE +FM L+DGDLASNNGGWQW++STG DS PYFRIFNP Q +RFDP+G F Sbjct: 359 LLIDWREGERFFMRHLIDGDLASNNGGWQWSSSTGTDSAPYFRIFNPLSQSERFDPEGVF 418 Query: 425 IRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYA 476 I+ WLPEL ++ + IH P S + + +YP PIVD K+ L + A Sbjct: 419 IKRWLPELADLNKKQIHDPAS-IGGLFGAADYPKPIVDLSKSRARALTAFKA 469 >gi|160876317|ref|YP_001555633.1| deoxyribodipyrimidine photo-lyase [Shewanella baltica OS195] gi|160861839|gb|ABX50373.1| Deoxyribodipyrimidine photo-lyase [Shewanella baltica OS195] gi|315268506|gb|ADT95359.1| Deoxyribodipyrimidine photo-lyase [Shewanella baltica OS678] Length = 499 Score = 382 bits (980), Expect = e-104, Method: Compositional matrix adjust. Identities = 201/480 (41%), Positives = 282/480 (58%), Gaps = 14/480 (2%) Query: 11 LVWLRNDLRITDNKALYAAC---HNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67 L+W R DLR+ DN+AL AAC + + A++IATP QW++H ++ Q FI + Sbjct: 23 LMWFRQDLRLADNQALSAACDWARENGVALKAIYIATPTQWQRHDVAPIQLDFIERHINL 82 Query: 68 VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127 + + L+ GI F+ Q F D ++ YC QQ ++++F + EINE +RD+ + Sbjct: 83 LAQGLASLGITFELIQLDTFADVPAFISDYCQQQGISRVFAGSEPEINEQQRDQAC---I 139 Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187 Q + ++ LL PG++LN + MYKV+TPF + + + + LPVPA GP Sbjct: 140 QAGIPLVLTEEHCLLKPGTVLNLSGDMYKVFTPFSRKWREIAARHAILPLPVPAP--LGP 197 Query: 188 VTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSP 247 V P F+ + ++ GE A IL F ++KV Y + RD PAI GTS +SP Sbjct: 198 VLTEPKPHLFNNVTKVSSELWAAGEGQAKRILSAFIQQKVQDYKQDRDFPAIDGTSSISP 257 Query: 248 YLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPF 307 YL+IGV+SPRQC L +F ++++ S A +WLNEL WREFYRHL+ +P + F Sbjct: 258 YLAIGVVSPRQCVAALLHDFPEVIVDDTSPARTWLNELTWREFYRHLLVAFPDLSKNYNF 317 Query: 308 IPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLV 367 + ++W + AW +G TG+PI+DAAMRQLN GWMHNRLRM+ ASFL K LL+ Sbjct: 318 NRQADHVQWRNNQQEFAAWCEGRTGYPIVDAAMRQLNQTGWMHNRLRMVVASFLTKHLLI 377 Query: 368 DWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRH 427 DWR GE F +L+DGDLA+NNGGWQW+A G D+ PYFRIFNP Q ++FDP G+FIR Sbjct: 378 DWRWGERNFRQKLIDGDLAANNGGWQWSAGCGCDAQPYFRIFNPMSQSEKFDPDGSFIRK 437 Query: 428 WLPELNNVPTQYIHAPH-----SWLDKNDLS-LNYPLPIVDHKKACHHTLNQYYAAKKQS 481 +LPEL + + +H P S D+ + YP IV+H A L KK + Sbjct: 438 YLPELASWGIKQLHQPSTAQTPSLFDQPLFTKTAYPSAIVEHSAARARALTVLGVLKKAA 497 >gi|289624749|ref|ZP_06457703.1| deoxyribodipyrimidine photolyase [Pseudomonas syringae pv. aesculi str. NCPPB3681] gi|289648378|ref|ZP_06479721.1| deoxyribodipyrimidine photolyase [Pseudomonas syringae pv. aesculi str. 2250] gi|330868910|gb|EGH03619.1| deoxyribodipyrimidine photolyase [Pseudomonas syringae pv. aesculi str. 0893_23] Length = 482 Score = 382 bits (980), Expect = e-104, Method: Compositional matrix adjust. Identities = 197/472 (41%), Positives = 277/472 (58%), Gaps = 7/472 (1%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 + L+WLR+DLR+ DN AL AA +AV++ +P QWR H + + F +L+++ Sbjct: 1 MQLIWLRSDLRVHDNTALTAAMER--GPTLAVYLLSPAQWRSHDDADCKVDFWLRNLVEL 58 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128 +K+L + + +D + E L + C Q +V L N++Y INE RRD+ ++K L+ Sbjct: 59 EKALGALNVPLLIREADTWDQAPEVLSTLCTQFKVEGLHLNQEYGINETRRDQAVQKALE 118 Query: 129 HR-VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187 V S+ D +L PGSIL ++V+T F+K + QA + + P + + Sbjct: 119 KAGVQVTSYLDQLLFKPGSILTKTGNYFQVFTQFKKVCYNRMHQAMPQPVRTPKAQQSLS 178 Query: 188 VTPSNIP---RFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244 + +IP F P +A+ ++P GE A + F ++ YY +RD PA GTSQ Sbjct: 179 IKSDSIPDQVEGFATPSKALRDLWPAGEAEARRRMATFADAQISYYKTERDFPAKPGTSQ 238 Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304 LS YL+ GV+SPRQC + G +W+NEL+WREFY+H + YP V Sbjct: 239 LSAYLAAGVISPRQCLHAALGSNQGEFETGDVGTVTWINELLWREFYKHTLVGYPRVSRH 298 Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364 + F P TE ++W L AW++ TG PIIDAAMRQL GWMHNRLRM+ A FL K+ Sbjct: 299 RAFRPETEALKWRDAPEELLAWQEARTGLPIIDAAMRQLLETGWMHNRLRMVVAMFLTKN 358 Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424 LL+DWR GE +FM L+DGDLASNNGGWQW++STG DS PYFRIFNP Q +RFDP+G F Sbjct: 359 LLIDWREGERFFMRHLIDGDLASNNGGWQWSSSTGTDSAPYFRIFNPLSQSERFDPEGVF 418 Query: 425 IRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYA 476 I+ WLPEL ++ + IH P S + + +YP PIVD K+ L + A Sbjct: 419 IKRWLPELADLNKKQIHDPAS-IGGLFGAADYPKPIVDLSKSRARALAAFKA 469 >gi|213967212|ref|ZP_03395361.1| deoxyribodipyrimidine photolyase [Pseudomonas syringae pv. tomato T1] gi|301381052|ref|ZP_07229470.1| deoxyribodipyrimidine photolyase [Pseudomonas syringae pv. tomato Max13] gi|302062191|ref|ZP_07253732.1| deoxyribodipyrimidine photolyase [Pseudomonas syringae pv. tomato K40] gi|213928054|gb|EEB61600.1| deoxyribodipyrimidine photolyase [Pseudomonas syringae pv. tomato T1] Length = 482 Score = 382 bits (980), Expect = e-103, Method: Compositional matrix adjust. Identities = 197/472 (41%), Positives = 278/472 (58%), Gaps = 7/472 (1%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 + L+WLR+DLR+ DN AL AA +AV++ +P QWR H + + F +L+++ Sbjct: 1 MQLIWLRSDLRVHDNTALTAAMQR--GPTLAVYLLSPTQWRNHDDADCKVDFWLRNLVEL 58 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128 +K+L + + + +D + E L + C Q +V L+ N +Y INE RRD+ +++ +Q Sbjct: 59 EKALGKLNVPLLIREADTWDQAPEVLSTLCKQLKVEGLYLNEEYGINETRRDQAVQQSMQ 118 Query: 129 -HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187 V S D +L PGSIL ++V+T F+K L QA R++ P + Sbjct: 119 ADGVHFTSHLDQLLFKPGSILTKTGNYFQVFTQFKKVCYTRLHQAMPRTVHTPEAQQPLS 178 Query: 188 VTPSNIP---RFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244 + IP + F P + + ++P GE A + F E++ YY ++RD PA GTSQ Sbjct: 179 IKSDAIPDQVKGFSTPSKTLRDLWPAGEVEASRRIEAFAGEQISYYKDERDFPARPGTSQ 238 Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304 LS YL+ GV+SPRQC + G +W+NEL+WREFY+H + YP V Sbjct: 239 LSAYLAAGVISPRQCLHAALASNQGEFETGDVGTVTWINELLWREFYKHTLVGYPRVSRH 298 Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364 + F P TE ++W L AW++ TG PIIDAAMRQL GWMHNRLRM+ A FL K+ Sbjct: 299 RAFRPETEALKWRDAPEELLAWQEARTGLPIIDAAMRQLLETGWMHNRLRMVVAMFLTKN 358 Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424 LL+DWR GE +FM L+DGDLA+NNGGWQW++STG DS PYFRIFNP Q +RFDP+G F Sbjct: 359 LLIDWREGERFFMRHLIDGDLAANNGGWQWSSSTGTDSAPYFRIFNPLSQSERFDPEGVF 418 Query: 425 IRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYA 476 I+ WLPEL ++ + IH P S ++ +YP PIVD K+ L + A Sbjct: 419 IKRWLPELADLNKKQIHDPASVGGLFGVA-DYPKPIVDLSKSRARALAAFKA 469 >gi|298485692|ref|ZP_07003771.1| Deoxyribodipyrimidine photolyase [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|298159718|gb|EFI00760.1| Deoxyribodipyrimidine photolyase [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] Length = 482 Score = 381 bits (979), Expect = e-103, Method: Compositional matrix adjust. Identities = 198/472 (41%), Positives = 277/472 (58%), Gaps = 7/472 (1%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 + L+WLR+DLR+ DN AL AA +AV++ +P QWR H + + F +L+++ Sbjct: 1 MQLIWLRSDLRVHDNTALTAAMER--GPTLAVYLLSPAQWRSHDDADCKVDFWLRNLVEL 58 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128 +K+L + + +D + E L + C Q +V L N++Y INE RRD+ ++K L+ Sbjct: 59 EKALGALNVPLLIREADTWDQAPEVLSTLCTQFKVEGLHLNQEYGINETRRDQAVQKALE 118 Query: 129 HR-VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187 V S+ D +L PGSIL ++V+T F+K + QA + + P + + Sbjct: 119 KAGVQVTSYLDQLLFKPGSILTKTGNYFQVFTQFKKVCYNRMHQAMPQPVRTPKAQQSLS 178 Query: 188 VTPSNIP---RFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244 + +IP F P +A+ ++P GE A + F ++ YY +RD PA GTSQ Sbjct: 179 IKSDSIPDQVEGFATPSKALRDLWPAGEAEARRRVATFADAQISYYKTERDFPAKPGTSQ 238 Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304 LS YL+ GV+SPRQC + G +W+NEL+WREFY+H + YP V Sbjct: 239 LSAYLAAGVISPRQCLHAALGSNQGEFETGDVGTVTWINELLWREFYKHTLVGYPRVSRH 298 Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364 + F P TE ++W L AW++ TG PIIDAAMRQL GWMHNRLRM+ A FL K+ Sbjct: 299 RAFRPETEALKWRDAPEELLAWQEARTGLPIIDAAMRQLLETGWMHNRLRMVVAMFLTKN 358 Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424 LL+DWR GE +FM L+DGDLASNNGGWQW++STG DS PYFRIFNP Q +RFDP+G F Sbjct: 359 LLIDWREGERFFMRHLIDGDLASNNGGWQWSSSTGTDSAPYFRIFNPLSQSERFDPEGLF 418 Query: 425 IRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYA 476 I+ WLPEL ++ + IH P S D + +YP PIVD K+ L + A Sbjct: 419 IKRWLPELADLNRKQIHDPASIGGLFD-AADYPKPIVDLSKSRARALAAFKA 469 >gi|330969367|gb|EGH69433.1| deoxyribodipyrimidine photolyase [Pseudomonas syringae pv. aceris str. M302273PT] Length = 482 Score = 381 bits (978), Expect = e-103, Method: Compositional matrix adjust. Identities = 195/472 (41%), Positives = 277/472 (58%), Gaps = 7/472 (1%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 + L+WLR+DLR DN AL AA +AV++ +P QWR H + + F +L+++ Sbjct: 1 MQLIWLRSDLRAQDNTALTAAMER--GPTLAVYLLSPAQWRSHDDADCKVDFWLRNLVEL 58 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128 +K+L + + + +D + E L + C Q +V L N++Y INE RRD+ ++K ++ Sbjct: 59 EKALGELNVPLLIREADTWDQAPEVLATLCTQFKVEGLHLNQEYGINETRRDQAVQKAME 118 Query: 129 HRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187 + S+ D +L PGSIL ++V+T F+K L +A + P + Sbjct: 119 KAGVHFNSYLDQLLFKPGSILTKTGNYFQVFTQFKKVCYTRLHEAMPHPVRTPQAQAAQS 178 Query: 188 VTPSNIP---RFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244 + +P + F P +A+ ++P GE A + F E++ YY +RD PA GTSQ Sbjct: 179 MKSDAVPEQVKGFATPSKALRDLWPAGEAEARRRMDAFADEQISYYKTERDFPAKPGTSQ 238 Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304 LS YL+ GV+SPRQC + G +W+NEL+WREFY+H + YP V Sbjct: 239 LSAYLAAGVISPRQCLHAALASNQGEFETGDVGTVTWINELLWREFYKHTLVGYPRVSRH 298 Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364 + F P TE ++W L+AW++ TG PIIDAAMRQL GWMHNRLRM+ A FL K+ Sbjct: 299 RAFRPETEALKWRDAPEELRAWQEARTGLPIIDAAMRQLLETGWMHNRLRMVVAMFLTKN 358 Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424 LL+DWR GE +FM L+DGDLASNNGGWQW++STG DS PYFRIFNP Q +RFDP+G F Sbjct: 359 LLIDWREGERFFMRHLIDGDLASNNGGWQWSSSTGTDSAPYFRIFNPLSQSERFDPEGVF 418 Query: 425 IRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYA 476 I+ WLPEL ++ + IH P S + + +YP PIVD K+ L + A Sbjct: 419 IKRWLPELADMNKKQIHDP-SLIGDLFGAADYPKPIVDLSKSRARALAAFKA 469 >gi|66044214|ref|YP_234055.1| deoxyribodipyrimidine photolyase [Pseudomonas syringae pv. syringae B728a] gi|63254921|gb|AAY36017.1| Deoxyribodipyrimidine photolyase [Pseudomonas syringae pv. syringae B728a] Length = 482 Score = 381 bits (978), Expect = e-103, Method: Compositional matrix adjust. Identities = 196/472 (41%), Positives = 277/472 (58%), Gaps = 7/472 (1%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 + L+WLR+DLR DN AL AA +AV++ +P QWR H + + F +L+++ Sbjct: 1 MQLIWLRSDLRAQDNTALTAAMER--GPTLAVYLLSPAQWRSHDDADCKVDFWLRNLVEL 58 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL- 127 +K+L + + + +D + E L + C Q +V L N++Y INE RRD+ ++K + Sbjct: 59 EKALGELNVPLLIREADTWDQAPEVLATLCTQFKVEGLHLNQEYGINETRRDQAVQKAMG 118 Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187 + V S+ D +L PGSIL ++V+T F+K L +A + P + Sbjct: 119 KAGVHFNSYLDQLLFKPGSILTKTGNYFQVFTQFKKVCYTRLHEAMPHPVRTPQAQAAQS 178 Query: 188 VTPSNIPR---FFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244 + +P+ F P +A+ ++P GE A + F E++ YY +RD PA GTSQ Sbjct: 179 IKSDAVPKQVKGFATPSKALRDLWPAGEAEARRRMDAFAAEQISYYKTERDFPAKPGTSQ 238 Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304 LS YL+ GV+SPRQC + G +W+NEL+WREFY+H + YP V Sbjct: 239 LSAYLAAGVISPRQCLHAALASNQGEFETGDVGTVTWINELLWREFYKHTLVGYPRVSRH 298 Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364 + F P TE ++W L+AW++ TG PIIDAAMRQL GWMHNRLRM+ A FL K+ Sbjct: 299 RAFRPETEALKWRDAPEELRAWQEARTGLPIIDAAMRQLLETGWMHNRLRMVVAMFLTKN 358 Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424 LL+DWR GE +FM L+DGDLASNNGGWQW++STG DS PYFRIFNP Q +RFDP+G F Sbjct: 359 LLIDWREGERFFMRHLIDGDLASNNGGWQWSSSTGTDSAPYFRIFNPLSQSERFDPEGVF 418 Query: 425 IRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYA 476 I+ WLPEL ++ + IH P S + + +YP PIVD K+ L + A Sbjct: 419 IKRWLPELADMNKKQIHDP-SLIGDLFGAADYPKPIVDLSKSRARALAAFKA 469 >gi|302130079|ref|ZP_07256069.1| deoxyribodipyrimidine photolyase [Pseudomonas syringae pv. tomato NCPPB 1108] Length = 482 Score = 381 bits (978), Expect = e-103, Method: Compositional matrix adjust. Identities = 196/472 (41%), Positives = 278/472 (58%), Gaps = 7/472 (1%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 + L+WLR+DLR+ DN AL AA +AV++ +P QWR H + + F +L+++ Sbjct: 1 MQLIWLRSDLRVHDNTALTAAMQR--GPTLAVYLLSPTQWRNHDDADCKVDFWLRNLVEL 58 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128 +K++ + + + +D + E L + C Q +V L+ N +Y INE RRD+ +++ +Q Sbjct: 59 EKAIGKLNVPLLIREADTWDQAPEVLSTLCKQLKVEGLYLNEEYGINETRRDQAVQQSMQ 118 Query: 129 -HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187 V S D +L PGSIL ++V+T F+K L QA R++ P + Sbjct: 119 ADGVHFTSHLDQLLFKPGSILTKTGNYFQVFTQFKKVCYTRLHQAMPRTVHTPEAQQPLS 178 Query: 188 VTPSNIP---RFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244 + IP + F P + + ++P GE A + F E++ YY ++RD PA GTSQ Sbjct: 179 IKSDAIPDQVKGFSTPSKTLRDLWPAGEVEASRRIEAFAGEQISYYKDERDFPARPGTSQ 238 Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304 LS YL+ GV+SPRQC + G +W+NEL+WREFY+H + YP V Sbjct: 239 LSAYLAAGVISPRQCLHAALASNQGEFETGDVGTVTWINELLWREFYKHTLVGYPRVSRH 298 Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364 + F P TE ++W L AW++ TG PIIDAAMRQL GWMHNRLRM+ A FL K+ Sbjct: 299 RAFRPETEALKWRDAPEELLAWQEARTGLPIIDAAMRQLLETGWMHNRLRMVVAMFLTKN 358 Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424 LL+DWR GE +FM L+DGDLA+NNGGWQW++STG DS PYFRIFNP Q +RFDP+G F Sbjct: 359 LLIDWREGERFFMRHLIDGDLAANNGGWQWSSSTGTDSAPYFRIFNPLSQSERFDPEGVF 418 Query: 425 IRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYA 476 I+ WLPEL ++ + IH P S ++ +YP PIVD K+ L + A Sbjct: 419 IKRWLPELADLNKKQIHDPASVGGLFGVA-DYPKPIVDLSKSRARALAAFKA 469 >gi|148975313|ref|ZP_01812237.1| putative deoxyribodipyrimidine photolyase [Vibrionales bacterium SWAT-3] gi|145965237|gb|EDK30487.1| putative deoxyribodipyrimidine photolyase [Vibrionales bacterium SWAT-3] Length = 471 Score = 380 bits (977), Expect = e-103, Method: Compositional matrix adjust. Identities = 194/464 (41%), Positives = 292/464 (62%), Gaps = 13/464 (2%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 ++W+R DLRI DN AL +A N + IAVFI+TP++W QH ++ ++ FI+ L Q++ Sbjct: 4 ILWIRRDLRIHDNPALVSAIENGVS--IAVFISTPQKWHQHHLAPIKADFIFRHLKQLEA 61 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130 L+ GI + + ++FDD + L Q +F N + E++E RD+ L + Sbjct: 62 ELADLGITLLHLKATDFDDQSKQLTELYQQLGSQAVFANSEPEVDEQARDQQL---ISSG 118 Query: 131 VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLP--VPAIRLTGPV 188 + + D V+LP GS+LN +M+KV+TPF+ A ++ + ++ P + + + Sbjct: 119 INLQISDCDVMLPLGSVLNQQGEMFKVFTPFKNAWLKEVQAKGIQCSPAVLTSKNNAKAL 178 Query: 189 TPSNIPRF-----FDYPFQAIDPM-FPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGT 242 P+N+ +D+ F +D +P+ + +++ F KV Y RDIP+++GT Sbjct: 179 LPNNLQTLQLASDYDFDFPHVDSSRWPLSQDVLGNVIPNFLANKVNDYAHLRDIPSVKGT 238 Query: 243 SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVC 302 S LSPYL+IG +SPR +L ++ DLL + AFSWLNELIWR+FY+HLM +P + Sbjct: 239 SGLSPYLAIGAVSPRWLAIQLIQQQPDLLFDTQLPAFSWLNELIWRDFYKHLMFHHPKLV 298 Query: 303 MGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLV 362 G F ++W +D +AW +G TG+P++DAAMRQL GWMHNRLRM+ ASFL Sbjct: 299 KGANFQQKYNGLDWYQDHPNFKAWCEGKTGYPLVDAAMRQLVDTGWMHNRLRMVVASFLT 358 Query: 363 KDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQG 422 K LL+DWR GE +FM L+DGD ++NNGGWQWA+STG D+ PYFRIFNP Q ++FDP+G Sbjct: 359 KHLLIDWRWGERFFMDHLIDGDFSANNGGWQWASSTGCDAQPYFRIFNPITQSEKFDPKG 418 Query: 423 TFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKA 466 FIR ++PEL N+P +++H PH ++ KN ++ Y PIV+HK+A Sbjct: 419 IFIRKYIPELKNIPDKHVHFPHDYIAKNGINSEYWQPIVEHKEA 462 >gi|331008878|gb|EGH88934.1| deoxyribodipyrimidine photolyase [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 482 Score = 380 bits (977), Expect = e-103, Method: Compositional matrix adjust. Identities = 197/472 (41%), Positives = 277/472 (58%), Gaps = 7/472 (1%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 + L+WLR+DLR+ DN AL AA +AV++ +P QWR H + + F +L+++ Sbjct: 1 MQLIWLRSDLRVHDNTALTAAMER--GPTLAVYLLSPAQWRSHDDADCKVDFWLRNLVEL 58 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128 +K+L + + +D + E L + C Q +V L N++Y INE RRD+ ++K L+ Sbjct: 59 EKALGALNVPLLIREADTWDQAPEVLSTLCTQFKVEGLHLNQEYGINETRRDQAVQKALE 118 Query: 129 HR-VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187 V S+ D +L PGSIL ++V+T F+K + QA + + P + + Sbjct: 119 KAGVQVTSYLDQLLFKPGSILTKTGNYFQVFTQFKKVCYNRMHQAMPQPVRTPKAQQSLS 178 Query: 188 VTPSNIP---RFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244 + +IP F P +A+ ++P GE A + F ++ YY +RD PA GTSQ Sbjct: 179 IKSDSIPDQVEGFATPSKALRDLWPAGEAEARRRMATFADAQISYYKTERDFPAKPGTSQ 238 Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304 LS YL+ GV+SPRQC + G +W+NEL+WREFY+H + YP V Sbjct: 239 LSAYLAAGVISPRQCLHAALGSNQGEFETGDVGTVTWINELLWREFYKHTLVGYPRVSRH 298 Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364 + F P TE ++W L AW++ TG PIIDAAMRQL GWMHNRLRM+ A FL K+ Sbjct: 299 RAFRPETEALKWRDAPEELLAWQEARTGLPIIDAAMRQLLETGWMHNRLRMVVAMFLTKN 358 Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424 LL+DWR GE +FM L+DGDLASNNGGWQW++STG DS PYFRIFNP Q +RFDP+G F Sbjct: 359 LLIDWREGERFFMRHLIDGDLASNNGGWQWSSSTGTDSPPYFRIFNPLSQSERFDPEGVF 418 Query: 425 IRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYA 476 I+ WLPEL ++ + IH P S + + +YP PIVD K+ L + A Sbjct: 419 IKRWLPELADLNKKQIHDPAS-IGGLFGAADYPKPIVDLSKSRARALTAFKA 469 >gi|218677191|ref|YP_002396010.1| Deoxyribodipyrimidine photolyase [Vibrio splendidus LGP32] gi|218325459|emb|CAV27611.1| Deoxyribodipyrimidine photolyase [Vibrio splendidus LGP32] Length = 486 Score = 380 bits (977), Expect = e-103, Method: Compositional matrix adjust. Identities = 201/479 (41%), Positives = 290/479 (60%), Gaps = 28/479 (5%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 ++W+R DLRI DN AL +A N + IAVFI+TP+QW+QH ++ ++ FIY L Q + Sbjct: 4 ILWIRRDLRIHDNPALVSAVENGAS--IAVFISTPQQWQQHHLAPIKADFIYRHLKQFES 61 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130 L++ GI + + ++F+D L + C Q T ++ N + E++E RDK L + Sbjct: 62 QLAEFGITLLHLKATDFNDQASQLINLCKQVDATCVYANSEPEVDEQLRDKRL---IATG 118 Query: 131 VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNL---------------VQADLR 175 + K D +LP GS+LN +M+KV+TPF+ A ++ + A Sbjct: 119 IKLKITDCDTILPLGSVLNKQGEMFKVFTPFKNAWLKEVQAKGIICSHAPVHSTGSAQAG 178 Query: 176 SLPVPAIRLTGPVTP-------SNIPRFFDYPFQAIDP-MFPIGEQNALHILRKFCKEKV 227 S +++ P P S +D+ F D +P+ + ++ F KV Sbjct: 179 SSETDSLQNLSPQNPTPLNQSLSGFSGEYDFDFPRTDSERWPLSQDVLESVIPNFLANKV 238 Query: 228 YYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIW 287 Y RDIP+I+GTS LSPYL+IG +SPR +L ++ DLL + AFSWLNELIW Sbjct: 239 NDYSRLRDIPSIKGTSGLSPYLAIGAVSPRWLAIQLIQQQPDLLFDTQLPAFSWLNELIW 298 Query: 288 REFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIG 347 R+FY+HLM +P + G F ++W D+ +AW +G TG+P++DAAMRQL G Sbjct: 299 RDFYKHLMFHHPILVKGANFQQKYNGLDWYHDNPSFKAWCEGKTGYPLVDAAMRQLVETG 358 Query: 348 WMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFR 407 WMHNRLRM+ ASFL K LL+DWR GE +FMS L+DGD ++NNGGWQWA+STG D+ PYFR Sbjct: 359 WMHNRLRMVVASFLTKHLLIDWRWGERFFMSHLIDGDFSANNGGWQWASSTGCDAQPYFR 418 Query: 408 IFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKA 466 IFNP Q ++FDP+G FIR ++PEL N+P +++H PH ++ KN + Y PIV+HK+A Sbjct: 419 IFNPITQSEKFDPKGIFIRKYIPELQNIPDKHVHFPHDFIAKNGIDSEYWQPIVEHKEA 477 >gi|71280055|ref|YP_268123.1| deoxyribodipyrimidine photolyase [Colwellia psychrerythraea 34H] gi|71145795|gb|AAZ26268.1| deoxyribodipyrimidine photolyase [Colwellia psychrerythraea 34H] Length = 470 Score = 380 bits (977), Expect = e-103, Method: Compositional matrix adjust. Identities = 201/464 (43%), Positives = 281/464 (60%), Gaps = 13/464 (2%) Query: 11 LVWLRNDLRITDNKALY-------AACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYA 63 L+WLRNDLR DN AL+ + H+S A+F +QW+QH S + FI Sbjct: 2 LLWLRNDLRTHDNPALHYFLSRNALSQHDSAVPAKAIFFICEQQWQQHDWSPIKIDFIKR 61 Query: 64 SLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLL 123 + K L+ I + + NF +L SYC +T++ N + E NE +RDK L Sbjct: 62 HAHALVKELALLNIELELIELDNFTQQKTYLHSYCQLHNITEVVANSEVEFNEQQRDKAL 121 Query: 124 EKRLQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAI 182 L+ I + V++P G +LN + MYKV+TPF++A + + Q L ++ Sbjct: 122 YLELKASGIPLTLLEADVIVPKGKVLNQSGIMYKVFTPFKRAWLTYIQQGGFEYLGKVSV 181 Query: 183 RLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGT 242 + + N + +I +P+ IL KF ++K+ Y RDIP+I+GT Sbjct: 182 KSSAVNKADNQ----EEDQGSISSTWPLATVFEQQILPKFYQQKISTYKLNRDIPSIKGT 237 Query: 243 SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVC 302 S +SPYL+ GV+SPR L + DLL+ S FSWLNE+IWREFYRHL+ +C Sbjct: 238 SGISPYLAAGVISPRFVLRLLLNKHPDLLVASDSEEFSWLNEIIWREFYRHLLFHEQRLC 297 Query: 303 MGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLV 362 + + +++ W+ D+ L AW QG TG+P++DAAMRQLN GWMHNRLRM+ ASFL Sbjct: 298 KHQCYKENYQEMLWHNDAALFDAWCQGRTGYPLVDAAMRQLNQTGWMHNRLRMVVASFLT 357 Query: 363 KDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQG 422 K LL+DWR+GE+YFM L+DGDLASNNGGWQWAASTG D+ PYFRIFNP Q +RFDP+G Sbjct: 358 KHLLIDWRLGEKYFMQHLIDGDLASNNGGWQWAASTGCDAQPYFRIFNPIRQSERFDPKG 417 Query: 423 TFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKA 466 FIR ++PELNN+ + IH PH ++ N+L++ +P IV+HK+A Sbjct: 418 VFIRKYIPELNNISDKAIHFPHQYIKDNELNIYWP-AIVEHKEA 460 >gi|320325702|gb|EFW81763.1| deoxyribodipyrimidine photolyase [Pseudomonas syringae pv. glycinea str. B076] gi|320327379|gb|EFW83393.1| deoxyribodipyrimidine photolyase [Pseudomonas syringae pv. glycinea str. race 4] gi|330881872|gb|EGH16021.1| deoxyribodipyrimidine photolyase [Pseudomonas syringae pv. glycinea str. race 4] Length = 482 Score = 380 bits (975), Expect = e-103, Method: Compositional matrix adjust. Identities = 195/472 (41%), Positives = 277/472 (58%), Gaps = 7/472 (1%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 + L+WLR+DLR+ DN AL AA +AV++ +P QWR H + + F +L+++ Sbjct: 1 MQLIWLRSDLRVHDNTALTAAMER--GPTLAVYLLSPAQWRSHDDADCKVDFWLRNLVEL 58 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128 +K+L + + +D + E L + C Q ++ L N++Y INE RRD+ ++K L+ Sbjct: 59 EKALGALNVPLLIREADTWDQAPEVLSTLCTQLKIEGLHLNQEYGINETRRDQAVQKALE 118 Query: 129 HR-VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187 V S+ D +L PGSIL ++V+T F+K + QA + + P + + Sbjct: 119 KAGVQVTSYLDQLLFKPGSILTKTGNYFQVFTQFKKVCYNRMHQAMPQPVRTPKAQQSLS 178 Query: 188 VTPSNIP---RFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244 + +IP F P +A+ ++P GE A + F ++ YY +RD PA GTSQ Sbjct: 179 IKSDSIPDQVEGFATPSKALRDLWPAGEAEARRRMATFADAQISYYKTERDFPAKPGTSQ 238 Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304 LS YL+ GV+SPRQC + G +W+NEL+WREFY+H + YP V Sbjct: 239 LSAYLAAGVISPRQCLHAALGSNQGEFETGDVGTVTWINELLWREFYKHTLVGYPRVSRH 298 Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364 + F P TE ++W L AW++ TG PIIDAAMRQL GWMHNRLRM+ A FL K+ Sbjct: 299 RAFRPETEALKWRDAPEELLAWQEARTGLPIIDAAMRQLLETGWMHNRLRMVVAMFLTKN 358 Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424 LL+DWR GE +FM L+DGDLA+NNGGWQW++STG DS PYFRIFNP Q +RFDP+G F Sbjct: 359 LLIDWREGERFFMRHLIDGDLAANNGGWQWSSSTGTDSAPYFRIFNPLSQSERFDPEGLF 418 Query: 425 IRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYA 476 I+ WLPEL ++ + IH P S + + +YP PIVD K+ L + A Sbjct: 419 IKRWLPELADLNKKQIHDPAS-IGGLFGAADYPKPIVDLSKSRARALAAFKA 469 >gi|146306105|ref|YP_001186570.1| deoxyribodipyrimidine photo-lyase type I [Pseudomonas mendocina ymp] gi|145574306|gb|ABP83838.1| deoxyribodipyrimidine photo-lyase type I [Pseudomonas mendocina ymp] Length = 477 Score = 380 bits (975), Expect = e-103, Method: Compositional matrix adjust. Identities = 198/469 (42%), Positives = 272/469 (57%), Gaps = 7/469 (1%) Query: 10 HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69 L+W R+DLRI DN AL A S IA+++ TP QW++H + + F +L + Sbjct: 3 QLMWFRSDLRIDDNTALSQAM--SRGSTIALYLVTPGQWQRHDDAPCKVDFWLRNLAHLS 60 Query: 70 KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL-Q 128 ++L+ + QC +++ + + C Q V + N +Y INE RD+ + L Q Sbjct: 61 RALAALNVPLLIRQCEDWNQAPAVIAEVCHQHNVCAVHANEEYGINENLRDRCVAAYLAQ 120 Query: 129 HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188 + S D +L PGSIL + ++VY+ FRK ++L A + P + P+ Sbjct: 121 QDIAWHSHLDQLLFKPGSILTRSGGYFQVYSQFRKVCYEHLHMALPGLVARPVAQAPTPL 180 Query: 189 TPSNIPRFFD---YPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245 IP D P + + ++P GE+ A L +F E++ YY ++RD PA+ GTSQL Sbjct: 181 ASDAIPHAVDGFAMPSEQLRSLWPAGEEAARQRLERFADEQIGYYKDERDFPALPGTSQL 240 Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305 SPYL+ GVLSPRQC + +G +W+NEL+WREFY+H++ YP V + Sbjct: 241 SPYLAAGVLSPRQCLHAALAANRGEFDSGNAGVVTWVNELLWREFYKHILVGYPRVSRHR 300 Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365 F P TE + W + L AW+QG TG PIIDAAMRQL GWMHNRLRMI A FL K+L Sbjct: 301 AFRPETEAVAWRRAPEELAAWQQGRTGLPIIDAAMRQLLETGWMHNRLRMIVAMFLTKNL 360 Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425 L+DWR GE +FM L+DGDLA+NNGGWQW+ASTG D+ PYFRIFNP Q ++FD +G FI Sbjct: 361 LIDWREGERFFMRHLIDGDLAANNGGWQWSASTGTDAAPYFRIFNPISQSQKFDSEGRFI 420 Query: 426 RHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQY 474 RHWLPEL + + IH P S L YP PIVD ++ L + Sbjct: 421 RHWLPELAGLNKRDIHDPAS-LGGLFAPAGYPRPIVDLSRSRERALAAF 468 >gi|330873295|gb|EGH07444.1| deoxyribodipyrimidine photolyase [Pseudomonas syringae pv. morsprunorum str. M302280PT] Length = 482 Score = 379 bits (974), Expect = e-103, Method: Compositional matrix adjust. Identities = 196/472 (41%), Positives = 278/472 (58%), Gaps = 7/472 (1%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 + L+WLR+DLR+ DN AL AA +AV++ +P QWR H + + F +L+++ Sbjct: 1 MQLIWLRSDLRVHDNTALTAALQR--GPTLAVYLLSPTQWRNHDDADCKVDFWLRNLVEL 58 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128 +K+L + + + +D + E L S C Q +V L N +Y INE RRD+ +++ +Q Sbjct: 59 EKALGKLNVPLLIREADTWDQAPEVLSSLCKQFKVEGLHLNEEYGINETRRDQAVQQAMQ 118 Query: 129 -HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187 V S D +L PGSIL ++V+T F+K L +A R++ P + Sbjct: 119 ADGVHFTSHLDQLLFKPGSILTKTGNYFQVFTQFKKVCYTRLHEAMPRTVHTPEAQQPLS 178 Query: 188 VTPSNIP---RFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244 + IP + F P +++ ++P GE A + F E++ YY ++RD PA GTSQ Sbjct: 179 IKSDAIPDQVKGFSTPSKSLRDLWPAGEVEASRRIEAFADEQISYYKDERDFPAKPGTSQ 238 Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304 LS YL+ GV+SPRQC + G +W+NEL+WREFY+H + YP V Sbjct: 239 LSAYLAAGVISPRQCLHAALASNQGEFETGDVGTVTWINELLWREFYKHTLVGYPRVSRH 298 Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364 + F P TE ++W L AW++ TG PIIDAAMRQL GWMHNRLRM+ A FL K+ Sbjct: 299 RAFRPETEALKWRDAPEELLAWQEARTGLPIIDAAMRQLLETGWMHNRLRMVVAMFLTKN 358 Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424 LL+DWR GE +FM L+DGDLA+NNGGWQW++STG DS PYFRIFNP Q +RFDP+G F Sbjct: 359 LLIDWREGERFFMRHLIDGDLAANNGGWQWSSSTGTDSAPYFRIFNPLSQSERFDPEGVF 418 Query: 425 IRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYA 476 I+ W+PEL ++ + IH P S ++ +YP PIVD K+ L + A Sbjct: 419 IKRWMPELADLNKKQIHDPASVGGLFGVA-DYPKPIVDLSKSRARALAAFKA 469 >gi|330941669|gb|EGH44445.1| deoxyribodipyrimidine photolyase [Pseudomonas syringae pv. pisi str. 1704B] Length = 482 Score = 379 bits (974), Expect = e-103, Method: Compositional matrix adjust. Identities = 195/472 (41%), Positives = 276/472 (58%), Gaps = 7/472 (1%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 + L+WLR+DLR DN AL AA +AV++ +P QWR H + + F +L+++ Sbjct: 1 MQLIWLRSDLRAQDNTALTAAMER--GPTLAVYLLSPAQWRSHDDADCKVDFWLRNLVEL 58 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128 +K+L + + ++D + E L C Q +V L N++Y INE RRD+ ++K ++ Sbjct: 59 EKALGALNVPLLIREADSWDQAPEVLAKLCTQFKVEGLHLNQEYGINETRRDQAVQKAME 118 Query: 129 HRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187 + S+ D +L PGSIL ++V+T F+K L +A + P + Sbjct: 119 KAGVHFNSYLDQLLFKPGSILTKTGNYFQVFTQFKKVCYTRLHEAMPHPVRTPKAQPAQS 178 Query: 188 VTPSNIP---RFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244 + +P + F P +A+ ++P GE A + F E++ YY +RD PA GTSQ Sbjct: 179 IKSDAVPDQVKGFATPSKALRDLWPAGEAEARRRMDAFADEQISYYKTERDFPAKPGTSQ 238 Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304 LS YL+ GV+SPRQC + G +W+NEL+WREFY+H + YP V Sbjct: 239 LSAYLAAGVISPRQCLHAALASNQGEFETGDVGTVTWINELLWREFYKHTLVGYPRVSRH 298 Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364 + F P TE ++W L+AW++ TG PIIDAAMRQL GWMHNRLRM+ A FL K+ Sbjct: 299 RAFRPETEALKWRDAPEELRAWQEARTGLPIIDAAMRQLLETGWMHNRLRMVVAMFLTKN 358 Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424 LL+DWR GE +FM L+DGDLASNNGGWQW++STG DS PYFRIFNP Q +RFDP+G F Sbjct: 359 LLIDWREGERFFMRHLIDGDLASNNGGWQWSSSTGTDSAPYFRIFNPLSQSERFDPEGVF 418 Query: 425 IRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYA 476 I+ WLPEL ++ + IH P S + + +YP PIVD K+ L + A Sbjct: 419 IKRWLPELADMNKKQIHDP-SLIGDLFGAADYPKPIVDLSKSRARALAAFKA 469 >gi|28868336|ref|NP_790955.1| deoxyribodipyrimidine photolyase [Pseudomonas syringae pv. tomato str. DC3000] gi|28851573|gb|AAO54650.1| deoxyribodipyrimidine photolyase [Pseudomonas syringae pv. tomato str. DC3000] gi|331018110|gb|EGH98166.1| deoxyribodipyrimidine photolyase [Pseudomonas syringae pv. lachrymans str. M302278PT] Length = 482 Score = 379 bits (973), Expect = e-103, Method: Compositional matrix adjust. Identities = 197/472 (41%), Positives = 277/472 (58%), Gaps = 7/472 (1%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 + L+WLR+DLR+ DN AL AA +AV++ +P QWR H + + F +L+++ Sbjct: 1 MQLIWLRSDLRVHDNTALTAAMQR--GPTLAVYLLSPTQWRNHDDADCKVDFWLRNLVEL 58 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128 +K+L + + + +D + E L + C Q +V L N +Y INE RRD+ +++ +Q Sbjct: 59 EKALGKLNVPLLIREADTWDQAPEVLATLCKQFKVEGLHLNEEYGINETRRDQAVQQSMQ 118 Query: 129 -HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187 V S D +L PGSIL ++V+T F+K L QA R++ P + Sbjct: 119 ADGVHFTSHLDQLLFKPGSILTKTGNYFQVFTQFKKVCYTRLHQAMPRTVHTPEAQQPLS 178 Query: 188 VTPSNIP---RFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244 + IP + F P + + ++P GE A + F E++ YY ++RD PA GTSQ Sbjct: 179 IKSDAIPDQVKGFSTPSKTLRDLWPAGEVEASRRIEAFAGEQISYYKDERDFPARPGTSQ 238 Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304 LS YL+ GV+SPRQC + G +W+NEL+WREFY+H + YP V Sbjct: 239 LSAYLAAGVISPRQCLHAALASNQGEFETGDVGTVTWINELLWREFYKHTLVGYPRVSRH 298 Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364 + F P TE ++W L AW++ TG PIIDAAMRQL GWMHNRLRM+ A FL K+ Sbjct: 299 RAFRPETEALKWRDAPEELLAWQEARTGLPIIDAAMRQLLETGWMHNRLRMVVAMFLTKN 358 Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424 LL+DWR GE +FM L+DGDLA+NNGGWQW++STG DS PYFRIFNP Q +RFDP+G F Sbjct: 359 LLIDWREGERFFMRHLIDGDLAANNGGWQWSSSTGTDSAPYFRIFNPLSQSERFDPEGVF 418 Query: 425 IRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYA 476 I+ WLPEL ++ + IH P S ++ +YP PIVD K+ L + A Sbjct: 419 IKRWLPELADLNKKQIHDPASVGGLFGVA-DYPKPIVDLSKSRARALAAFKA 469 >gi|289678393|ref|ZP_06499283.1| deoxyribodipyrimidine photolyase [Pseudomonas syringae pv. syringae FF5] Length = 482 Score = 379 bits (973), Expect = e-103, Method: Compositional matrix adjust. Identities = 199/475 (41%), Positives = 278/475 (58%), Gaps = 13/475 (2%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 + L+WLR+DLR DN AL AA +AV++ +P QWR H + + F +L+++ Sbjct: 1 MQLIWLRSDLRAQDNTALTAAMER--GPTLAVYLLSPAQWRSHDDADCKVDFWLRNLVEL 58 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128 +K+L + + ++D + E L C Q +V L N++Y INE RRD+ ++K ++ Sbjct: 59 EKALGALNVPLLIREADSWDQAPEVLAKLCTQFKVEGLHLNQEYGINETRRDQAVQKAME 118 Query: 129 HRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPV------PA 181 + S+ D +L PGSIL ++V+T F+K L +A PV PA Sbjct: 119 KAGVHFNSYLDQLLFKPGSILTKTGNYFQVFTQFKKVCYTRLHEA--MPYPVRTPKAQPA 176 Query: 182 IRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQG 241 + V P + + F P +A+ ++P GE A + F E++ YY +RD PA G Sbjct: 177 QSIKSDVVPDQV-KGFAMPSKALRDLWPAGEAEARRRMDTFADEQISYYKTERDFPAKPG 235 Query: 242 TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSV 301 TSQLS YL+ GV+SPRQC + G +W+NEL+WREFY+H + YP V Sbjct: 236 TSQLSAYLAAGVISPRQCLHAALASNQGEFETGDVGTVTWINELLWREFYKHTLVGYPRV 295 Query: 302 CMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFL 361 + F P TE ++W L+AW++ TG PIIDAAMRQL GWMHNRLRM+ A FL Sbjct: 296 SRHRAFRPETEALKWRDAPEELRAWQEARTGLPIIDAAMRQLLETGWMHNRLRMVVAMFL 355 Query: 362 VKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQ 421 K+LL+DWR GE +FM L+DGDLASNNGGWQW++STG DS PYFRIFNP Q +RFDP+ Sbjct: 356 TKNLLIDWREGERFFMRHLIDGDLASNNGGWQWSSSTGTDSAPYFRIFNPLSQSERFDPE 415 Query: 422 GTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYA 476 G FI+ WLPEL ++ + IH P S + + +YP PIVD K+ L + A Sbjct: 416 GVFIKRWLPELADMNKKQIHDP-SLIGDLFGAADYPKPIVDLSKSRARALAAFKA 469 >gi|71733434|ref|YP_273281.1| deoxyribodipyrimidine photolyase [Pseudomonas syringae pv. phaseolicola 1448A] gi|71553987|gb|AAZ33198.1| deoxyribodipyrimidine photolyase [Pseudomonas syringae pv. phaseolicola 1448A] Length = 482 Score = 379 bits (972), Expect = e-103, Method: Compositional matrix adjust. Identities = 195/472 (41%), Positives = 276/472 (58%), Gaps = 7/472 (1%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 + L+WLR+DLR+ DN AL AA +AV++ +P QWR H + + F +L+++ Sbjct: 1 MQLIWLRSDLRVHDNTALTAAMER--GPTLAVYLLSPAQWRSHDDADCKVDFWLRNLVEL 58 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128 +K+L + + +D + E L + C Q ++ L N++Y INE RRD+ ++K L+ Sbjct: 59 EKALGALNVPLLIREADTWDQAPEVLSTLCTQLKIEGLHLNQEYGINETRRDQAVQKALE 118 Query: 129 HR-VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187 V S+ D +L PGSIL ++V+T F+K + QA + + P + + Sbjct: 119 KAGVQVTSYLDQLLFKPGSILTKTGNYFQVFTQFKKVCYNRMHQAMPQPVRTPKAQQSLS 178 Query: 188 VTPSNIP---RFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244 + +IP F P +A+ ++P GE A + F ++ YY +RD PA GTSQ Sbjct: 179 IKSDSIPDQVEGFATPSKALRDLWPAGEAEARRRMATFADAQISYYKTERDFPAKPGTSQ 238 Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304 LS YL+ GV+SPRQC + G +W+NEL+WREFY+H + YP V Sbjct: 239 LSAYLAAGVISPRQCLHAALGSNQGEFETGDVGTVTWINELLWREFYKHTLVGYPRVSRH 298 Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364 + F P TE ++W L AW++ TG PIIDAAMRQL GWMHNRLRM+ A FL K+ Sbjct: 299 RAFRPETEALKWRDAPEELLAWQEARTGLPIIDAAMRQLLETGWMHNRLRMVVAMFLTKN 358 Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424 LL+DW GE +FM L+DGDLASNNGGWQW++STG DS PYFRIFNP Q +RFDP+G F Sbjct: 359 LLIDWHEGERFFMRHLIDGDLASNNGGWQWSSSTGTDSAPYFRIFNPLSQSERFDPEGVF 418 Query: 425 IRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYA 476 I+ WLPEL ++ + IH P S + + +YP PIVD K+ L + A Sbjct: 419 IKRWLPELADLNKKQIHDPAS-IGGLFGAADYPKPIVDLSKSRARALAAFKA 469 >gi|327480577|gb|AEA83887.1| deoxyribodipyrimidine photolyase [Pseudomonas stutzeri DSM 4166] Length = 476 Score = 379 bits (972), Expect = e-103, Method: Compositional matrix adjust. Identities = 199/474 (41%), Positives = 282/474 (59%), Gaps = 15/474 (3%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 L+WLR+DLR +DN AL +A + +AV++ TP QW H +A + F +L+++ Sbjct: 2 TQLIWLRSDLRTSDNTALASAM--AAGPTVAVYLITPGQWLAHDDAACKVDFWLRNLVEL 59 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128 L + ++ + + L C + V +L YN +Y +NE RRD+ + RL+ Sbjct: 60 AGRLQALNVPLLIRDAEDWQAAPDALLKLCQELAVQRLHYNDEYGVNEQRRDQAVAARLR 119 Query: 129 HRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPA----IR 183 I + + D +L PGS+L + +KV+ FR+A + L + + PA + Sbjct: 120 AAGIDVRGYLDQLLFAPGSVLTQSGGYFKVFGQFRRACLARLSMSLPACVAPPAPQQPMT 179 Query: 184 LTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS 243 +T V P + R FD P + ++P GE A H L F ++ ++ Y ++RD+PA GTS Sbjct: 180 VTSDVPPDEV-RGFDRPSDYLRTLWPAGETFAQHRLAAFIEDDLHQYHQRRDLPAEPGTS 238 Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCM 303 QLS YL+ GV+S RQC + L +GA +W+NEL+WREFY+H++ YP V M Sbjct: 239 QLSAYLAAGVISIRQCLHAAVASNRGELDSGSAGATTWINELLWREFYKHILVGYPRVSM 298 Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363 + F TE + W + + LQAW++G TGFPIIDAAMRQL GWMHNRLRM+TA FL K Sbjct: 299 HRAFRAETEALPWRRATDELQAWQEGRTGFPIIDAAMRQLRETGWMHNRLRMVTAMFLSK 358 Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423 +LL+DWR GE +FM L+DGDLA+NNGGWQW+ASTG DSVPYFR+FNP Q +RFDP G Sbjct: 359 NLLIDWREGERWFMRNLIDGDLAANNGGWQWSASTGTDSVPYFRLFNPISQSQRFDPDGQ 418 Query: 424 FIRHWLPELNNVPTQYIHAP---HSWLDKNDLSLNYPLPIVDHKKACHHTLNQY 474 F+R WLPEL + + IH P S K D YP PI+D ++ L+ + Sbjct: 419 FLRRWLPELQGLGKREIHNPSAQRSLFGKAD----YPAPIIDLGESRARALDAF 468 >gi|302185909|ref|ZP_07262582.1| deoxyribodipyrimidine photolyase [Pseudomonas syringae pv. syringae 642] Length = 482 Score = 379 bits (972), Expect = e-103, Method: Compositional matrix adjust. Identities = 193/472 (40%), Positives = 276/472 (58%), Gaps = 7/472 (1%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 + L+WLR+DLR DN AL AA +AV++ +P QWR H + + F +L+++ Sbjct: 1 MQLIWLRSDLRAQDNTALTAAMER--GPTLAVYLLSPAQWRSHDDADCKVDFWLRNLVEL 58 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128 +++L + + + +D + E L C Q +V L N++Y INE RRD+ ++K ++ Sbjct: 59 EQALGELNVPLLIREADTWDQAPEVLAKLCTQFKVEGLHLNQEYGINETRRDQAVQKAME 118 Query: 129 HRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187 + S+ D +L PGSIL ++V+T F+K + +A + P + Sbjct: 119 KAGVHFNSYLDQLLFKPGSILTKTGNYFQVFTQFKKVCYTRMHEAMPHPIRTPKAQPAQS 178 Query: 188 VTPSNIP---RFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244 + +P + F P +A+ ++P GE A + F E++ YY +RD PA GTSQ Sbjct: 179 IKSDTVPDQVKGFATPSKALRDLWPAGEAEARRRMDAFADEQISYYKTERDFPAKPGTSQ 238 Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304 LS YL+ GV+SPRQC + G +W+NEL+WREFY+H + YP V Sbjct: 239 LSAYLAAGVISPRQCLHAALASNQGEFETGDVGTVTWINELLWREFYKHTLVGYPRVSRH 298 Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364 + F P TE ++W L+AW++ TG PIIDAAMRQL GWMHNRLRM+ A FL K+ Sbjct: 299 RAFRPETEALKWRDAPEELRAWQEARTGLPIIDAAMRQLLETGWMHNRLRMVVAMFLTKN 358 Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424 LL+DWR GE +FM L+DGDLASNNGGWQW++STG DS PYFRIFNP Q +RFDP+G F Sbjct: 359 LLIDWREGERFFMRHLIDGDLASNNGGWQWSSSTGTDSAPYFRIFNPLSQSERFDPEGVF 418 Query: 425 IRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYA 476 I+ WLPEL ++ + IH P S + + +YP PIVD K+ L + A Sbjct: 419 IKRWLPELADMNKKQIHNP-SLIGDLFGAADYPKPIVDLSKSRARALAAFKA 469 >gi|254786801|ref|YP_003074230.1| deoxyribodipyrimidine photolyase [Teredinibacter turnerae T7901] gi|237686103|gb|ACR13367.1| deoxyribodipyrimidine photolyase [Teredinibacter turnerae T7901] Length = 465 Score = 378 bits (970), Expect = e-102, Method: Compositional matrix adjust. Identities = 198/463 (42%), Positives = 273/463 (58%), Gaps = 7/463 (1%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 ++L+W R DLR+ DN AL A+ AV+ W +H +S + I L ++ Sbjct: 1 MNLMWFRADLRVADNPALCASMQA--GPTAAVYTLCEATWSEHRLSPAKISLICRQLEKL 58 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128 + +L+ + CSNF L S+ + ++ +++N ++EINE K + LQ Sbjct: 59 ESALAALHVPLIIIPCSNFKRVPGELKSFAAKHNISAVYFNHEFEINERLLSKRVIAELQ 118 Query: 129 HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188 + SF+D + PG + + YKV+TPF+K + P P + P+ Sbjct: 119 PHIDTWSFNDQCAIAPGKLKTGSDDWYKVFTPFKKRYLAEFSSMARAVYPTPKAQKKIPI 178 Query: 189 TPSNIPRFFDYPFQAI-DPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSP 247 T S P F++ ++P GE A L +F K+ + Y E RD PA+ GTS LSP Sbjct: 179 TSSIAP-LQQVQFESCWQNLWPAGEDEAHRRLHRFGKDGMSRYHEDRDFPAVDGTSTLSP 237 Query: 248 YLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPF 307 YL++G +S RQC + ++ + GA +WL+EL+WR+FYRHL+ YP +C K F Sbjct: 238 YLAVGAISTRQCMDAAIQQGGMENDQSTQGAQTWLSELVWRDFYRHLLYGYPDLCKFKAF 297 Query: 308 IPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLV 367 TE++ W DS LL AW++G TGFPI+DAAM+QL GWMHNRLRMITA FL K L V Sbjct: 298 QQNTERLPWRHDSRLLTAWQEGRTGFPIVDAAMKQLVQTGWMHNRLRMITAMFLTKHLFV 357 Query: 368 DWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRH 427 DWR+GE++FM L+DGDLASNNGGWQW+ASTG D+ PYFRIFNPT Q +RFDP G FIRH Sbjct: 358 DWRLGEDFFMQHLVDGDLASNNGGWQWSASTGVDAAPYFRIFNPTRQSERFDPNGEFIRH 417 Query: 428 WLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHT 470 +LPEL N+ + IH+P S ++ S YP PIVDH A T Sbjct: 418 YLPELKNLSNKAIHSP-SVIEAE--SCGYPKPIVDHSTAVKQT 457 >gi|84386253|ref|ZP_00989282.1| putative deoxyribodipyrimidine photolyase [Vibrio splendidus 12B01] gi|84379023|gb|EAP95877.1| putative deoxyribodipyrimidine photolyase [Vibrio splendidus 12B01] Length = 481 Score = 378 bits (970), Expect = e-102, Method: Compositional matrix adjust. Identities = 199/474 (41%), Positives = 285/474 (60%), Gaps = 23/474 (4%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 ++W+R DLRI DN AL AA N AVFI+TP+QW+QH ++ ++ IY L Q++ Sbjct: 4 ILWIRRDLRIHDNPALVAAVEN--GVTTAVFISTPQQWQQHHLAPIKADLIYRHLQQLES 61 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130 L++ GI + + +FDD L Q T ++ N + E++E RDK L + Sbjct: 62 QLAEFGIDLLHLKARDFDDQAVQLTHLYKQLDATCIYANSEPEVDEQLRDKRL---IASG 118 Query: 131 VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAI-------- 182 + K D +LP GS+LN +M+KV+TPF+ A ++ + + P P Sbjct: 119 IKLKITDCDTILPLGSVLNKQGEMFKVFTPFKNAWLKEVQVKGIICSPAPVAPAKLQQTP 178 Query: 183 ---------RLTGPVTPSNIPRFFDYPFQAIDP-MFPIGEQNALHILRKFCKEKVYYYVE 232 +L+ I +D+ F +D +P+ + ++ F KV Y Sbjct: 179 LQQTQRPQSQLSDDSKALRISADYDFDFPRVDSSRWPLSQDVLESVIPNFLSNKVNDYSR 238 Query: 233 QRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYR 292 RDIP+I+GTS LSPYL+IG +SPR +L ++ DLL + AFSWLNELIWR+FY+ Sbjct: 239 LRDIPSIKGTSGLSPYLAIGAVSPRWLAIQLIQQQPDLLFDTQLPAFSWLNELIWRDFYK 298 Query: 293 HLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNR 352 HLM +P + G F ++W D+ +AW +G TG+P++DAAMRQL GWMHNR Sbjct: 299 HLMFHHPKLVKGANFQQKYNGLDWYHDNPSFKAWCEGKTGYPLVDAAMRQLVETGWMHNR 358 Query: 353 LRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPT 412 LRM+ ASFL K LL+DWR GE +FMS L+DGD ++NNGGWQWA+STG D+ PYFRIFNP Sbjct: 359 LRMVVASFLTKHLLIDWRWGERFFMSHLIDGDFSANNGGWQWASSTGCDAQPYFRIFNPI 418 Query: 413 IQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKA 466 Q ++FDP+G FIR ++PEL N+P +++H PH ++ KN + Y PIV+HK+A Sbjct: 419 TQSEKFDPKGIFIRKYIPELQNIPDKHVHFPHDFIAKNRIDSEYWQPIVEHKEA 472 >gi|330964968|gb|EGH65228.1| deoxyribodipyrimidine photolyase [Pseudomonas syringae pv. actinidiae str. M302091] Length = 482 Score = 378 bits (970), Expect = e-102, Method: Compositional matrix adjust. Identities = 196/472 (41%), Positives = 277/472 (58%), Gaps = 7/472 (1%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 + L+WLR+DLR+ DN AL AA +AV++ +P QWR H + + F +L+++ Sbjct: 1 MQLIWLRSDLRVHDNTALTAALQR--GPTLAVYLLSPTQWRNHDDADCKVDFWLRNLVEL 58 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128 +K+L + + + +D + E L S C Q +V L N +Y INE RRD+ +++ +Q Sbjct: 59 EKALGKLNVPLLIREADTWDQAPEVLSSLCKQFKVEGLHLNEEYGINETRRDQAVQQAMQ 118 Query: 129 -HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187 V S D +L PGSIL ++V+T F+K L +A R++ P + Sbjct: 119 ADGVHFTSHLDQLLFKPGSILTKTGNYFQVFTQFKKVCYTRLHEAMPRTVHTPEAQQPLS 178 Query: 188 VTPSNIP---RFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244 + IP + F P +++ ++P GE A + F E++ YY ++RD PA GTSQ Sbjct: 179 IKSDAIPDQVKGFSTPSKSLRDLWPAGEVEASRRIEAFADEQISYYKDERDFPAKPGTSQ 238 Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304 LS YL GV+SPRQC + G +W+NEL+WREFY+H + YP V Sbjct: 239 LSAYLVAGVISPRQCLHAALASNQGEFETGDVGTVTWINELLWREFYKHTLVGYPRVSRH 298 Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364 + F P TE ++W L AW++ TG PIIDAAMRQL GWMHNRLRM+ A FL K+ Sbjct: 299 RAFRPETEALKWRDAPEELLAWQEARTGLPIIDAAMRQLLETGWMHNRLRMVVAMFLTKN 358 Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424 LL+DWR GE +FM L+DGDLA+NNGGWQW++STG DS PYFRIFNP Q +RFDP+G F Sbjct: 359 LLIDWREGERFFMRHLIDGDLAANNGGWQWSSSTGTDSAPYFRIFNPLSQSERFDPEGVF 418 Query: 425 IRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYA 476 I+ W+PEL ++ + IH P S ++ +YP PIVD K+ L + A Sbjct: 419 IKRWMPELADLNKKQIHDPASVGGLFGVA-DYPKPIVDLSKSRARALAAFKA 469 >gi|330975589|gb|EGH75655.1| deoxyribodipyrimidine photolyase [Pseudomonas syringae pv. aptata str. DSM 50252] Length = 482 Score = 377 bits (969), Expect = e-102, Method: Compositional matrix adjust. Identities = 194/472 (41%), Positives = 275/472 (58%), Gaps = 7/472 (1%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 + L+WLR+DLR DN AL AA +AV++ +P QWR H + + F +L+++ Sbjct: 1 MQLIWLRSDLRAQDNTALTAAMER--GPTLAVYLLSPAQWRSHDDADCKVDFWLRNLVEL 58 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128 +K+L + + ++D + E L C Q +V L N++Y INE RRD+ ++K ++ Sbjct: 59 EKALGALNVPLLIREADSWDQAPEVLAKLCAQFKVEGLHLNQEYGINETRRDQAVQKAME 118 Query: 129 HRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187 + S+ D +L PGSIL ++V+T F+K L +A + P + Sbjct: 119 KAGVHFNSYLDQLLFKPGSILTKTGNYFQVFTQFKKVCYTRLHEAMPHPVRTPKAQPAQS 178 Query: 188 VTPSNIP---RFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244 + +P + F P + + ++P GE A + F E++ YY +RD PA GTSQ Sbjct: 179 IKSDAVPDQVKGFATPSKTLRDLWPAGEAEARRRMDAFADEQISYYKTERDFPAKPGTSQ 238 Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304 LS YL+ GV+SPRQC + G +W+NEL+WREFY+H + YP V Sbjct: 239 LSAYLAAGVISPRQCLHAALASNQGEFETGDVGTVTWINELLWREFYKHTLVGYPRVSRH 298 Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364 + F P TE ++W L+AW++ TG PIIDAAMRQL GWMHNRLRM+ A FL K+ Sbjct: 299 RAFRPETEALKWRDAPEELRAWQEARTGLPIIDAAMRQLLETGWMHNRLRMVVAMFLTKN 358 Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424 LL+DWR GE +FM L+DGDLASNNGGWQW++STG DS PYFRIFNP Q +RFDP+G F Sbjct: 359 LLIDWREGERFFMRHLIDGDLASNNGGWQWSSSTGTDSAPYFRIFNPLSQSERFDPEGVF 418 Query: 425 IRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYA 476 I+ WLPEL ++ + IH P S + + +YP PIVD K+ L + A Sbjct: 419 IKRWLPELADMNKKQIHDP-SLIGDLFGAADYPKPIVDLSKSRARALAAFKA 469 >gi|114046742|ref|YP_737292.1| deoxyribodipyrimidine photo-lyase type I [Shewanella sp. MR-7] gi|113888184|gb|ABI42235.1| Deoxyribodipyrimidine photo-lyase type I [Shewanella sp. MR-7] Length = 493 Score = 377 bits (969), Expect = e-102, Method: Compositional matrix adjust. Identities = 204/469 (43%), Positives = 280/469 (59%), Gaps = 21/469 (4%) Query: 11 LVWLRNDLRITDNKALYAAC----HNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 L+W R DLR+TDN+AL AAC AK+ A++IATP QW H ++ Q FI + Sbjct: 13 LMWFRQDLRLTDNQALTAACDWVRQAPGAKLRAIYIATPSQWLSHDMAPIQIDFIQRHVN 72 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 + + L+ GI F+ Q +F + +L SYC + V ++F R+ EINE +RD+ Sbjct: 73 LLAQGLASLGIEFELIQLDSFKEVPAFLASYCEKLGVERVFAGREPEINEQKRDQAC--- 129 Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 L + D+ LLPPG++LN + MYKV+TPF + + + + L VPA G Sbjct: 130 LDAGIPLVLSDEHCLLPPGTVLNLSGDMYKVFTPFSRKWREVAAKRAILPLAVPAP--LG 187 Query: 187 PVTPSNIPRFFD--YPFQA---IDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQG 241 P+ P P F +PF + + GE A IL F ++K Y + RD PA++G Sbjct: 188 PMLPEPKPISFKERFPFTSKLTSSEQWAAGEGQAKRILTAFIQQKAQDYKQDRDFPALEG 247 Query: 242 TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSV 301 TS +SPYL++GVLSPRQC L F ++++ S +WLNELIWREFYRHL+ +P + Sbjct: 248 TSVISPYLALGVLSPRQCIAALLGRFPEVIVDDTSPGRTWLNELIWREFYRHLLVAFPDL 307 Query: 302 CMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFL 361 G F + ++W + AW +G TG+PI+DAAMRQLN GWMHNRLRM+ ASFL Sbjct: 308 SKGHNFNRQADHVQWRNNQAEFLAWCEGKTGYPIVDAAMRQLNQTGWMHNRLRMVVASFL 367 Query: 362 VKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQ 421 K LL+DWR GE YF L+DGDLA+NNGGWQW+A G D+ PYFRIFNP Q ++FDP Sbjct: 368 TKHLLIDWRWGERYFRQHLIDGDLAANNGGWQWSAGCGCDAQPYFRIFNPISQSEKFDPD 427 Query: 422 GTFIRHWLPELNNVPTQYIHAPH-----SWLDKNDLSLN--YPLPIVDH 463 G+FIR +LPEL + + +H P+ S + L + YP IV+H Sbjct: 428 GSFIRKYLPELASWGIKRLHQPNMQKTPSLFEVQMLESDSAYPCAIVEH 476 >gi|330900868|gb|EGH32287.1| deoxyribodipyrimidine photolyase [Pseudomonas syringae pv. japonica str. M301072PT] Length = 482 Score = 377 bits (969), Expect = e-102, Method: Compositional matrix adjust. Identities = 196/472 (41%), Positives = 274/472 (58%), Gaps = 7/472 (1%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 + L+WLR+DLR DN AL AA +AV++ +P QWR H + + F +L+++ Sbjct: 1 MQLIWLRSDLRAQDNTALTAAMER--GPTLAVYLLSPAQWRSHDDADCKVDFWLRNLVEL 58 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128 +K+L + + ++D + E L C Q +V L N++Y INE RRD+ + K ++ Sbjct: 59 EKALGALNVPLLIREADSWDQAPEVLAKLCTQFKVEGLHLNQEYGINETRRDQAVHKAME 118 Query: 129 HRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187 + S+ D +L PGSIL ++V+T F+K L +A ++ P + Sbjct: 119 KAGVHFNSYLDQLLFKPGSILTKTGNYFQVFTQFKKVCYTRLHEAMPHTVRTPKAQPAQS 178 Query: 188 VTPSNIP---RFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244 + IP + F P A+ ++P GE A + F E++ YY +RD PA GTSQ Sbjct: 179 IKSDAIPDQAKGFATPSIALRDLWPAGEAEARRRMDAFADEQISYYKTERDFPAKPGTSQ 238 Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304 LS YL+ GV+SPRQC + G +W+NEL+WREFY+H + YP V Sbjct: 239 LSAYLAAGVISPRQCLHAALASNQGEFETGDVGTVTWINELLWREFYKHTLVGYPRVSRH 298 Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364 + F P TE + W L+AW++ TG PIIDAAMRQL GWMHNRLRM+ A FL K+ Sbjct: 299 RAFRPETEALNWRDAPEELRAWQEARTGLPIIDAAMRQLLETGWMHNRLRMVVAMFLTKN 358 Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424 LL+DWR GE +FM L+DGDLASNNGGWQW++STG DS PYFRIFNP Q +RFDP+G F Sbjct: 359 LLIDWREGERFFMRHLIDGDLASNNGGWQWSSSTGTDSAPYFRIFNPLSQSERFDPEGVF 418 Query: 425 IRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYA 476 I+ WLPEL ++ + IH P S + + +YP PIVD K+ L + A Sbjct: 419 IKRWLPELADMNKKQIHDP-SLIGDLFGAADYPKPIVDLSKSRARALAAFKA 469 >gi|119473269|ref|ZP_01614930.1| putative deoxyribodipyrimidine photolyase [Alteromonadales bacterium TW-7] gi|119444513|gb|EAW25832.1| putative deoxyribodipyrimidine photolyase [Alteromonadales bacterium TW-7] Length = 464 Score = 377 bits (968), Expect = e-102, Method: Compositional matrix adjust. Identities = 195/466 (41%), Positives = 272/466 (58%), Gaps = 9/466 (1%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 L W R DLR+ N+AL A +N A+F +QW+QH + Q + + +Q+ Sbjct: 4 LFWFRRDLRLFSNEALIEALNNGAKH--AIFFVCEKQWQQHQAAPIQIDLLKRRVTYLQE 61 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130 L+ GI +F D L S+C + + N +YE+NEV RDK + + R Sbjct: 62 QLANFGITLNVINAPSFSDCESELLSFCETHDIQHIIANTEYELNEVNRDKAVLAQCDKR 121 Query: 131 VICKS-FDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189 I + ++ ++ P GSI N + +MYKV+TPF++A ++ P + Sbjct: 122 SITFTLYEGDLIAPVGSIKNQSNEMYKVFTPFKRAWLKQYQDTHFSLAQWPQEQ-----N 176 Query: 190 PSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYL 249 P I + +P+ ++ L ++ F +K+ Y +QRDIP+I+GTS LSPYL Sbjct: 177 PIKIEKSQHLESDGSSDKWPVDDETLLSVVDNFICDKLTSYDDQRDIPSIKGTSGLSPYL 236 Query: 250 SIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIP 309 ++G++SP+Q +++ + D+L KS F+W+NELIWREFYRHL+A YP + G+ F Sbjct: 237 ALGIVSPKQLLINIQQRYPDILTTSKSKTFTWVNELIWREFYRHLIAEYPKLSRGENFNE 296 Query: 310 WTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDW 369 +EW K AW +G TG+P++DAAM QL GWMHNRLRM+ ASFL K LL+DW Sbjct: 297 KYNPVEWRKSEKEFNAWCEGRTGYPLVDAAMLQLKQTGWMHNRLRMVVASFLTKHLLIDW 356 Query: 370 RIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWL 429 R GE +FM L+DGDLASNNGGWQWAASTG D+ PYFRIFNP Q +RFDP G FIR +L Sbjct: 357 REGERFFMQHLIDGDLASNNGGWQWAASTGCDAQPYFRIFNPITQSERFDPTGKFIRKYL 416 Query: 430 PELNNVPTQYIHAPHSWLDKNDLSLNYPLP-IVDHKKACHHTLNQY 474 PEL NVP ++IH PH++L P IVDHK A L + Sbjct: 417 PELENVPDKHIHFPHTYLAATGKGSECYWPAIVDHKAARERALAAF 462 >gi|104780105|ref|YP_606603.1| deoxyribodipyrimidine photolyase (photoreactivation), FAD-binding [Pseudomonas entomophila L48] gi|95109092|emb|CAK13789.1| deoxyribodipyrimidine photolyase (photoreactivation), FAD-binding [Pseudomonas entomophila L48] Length = 484 Score = 377 bits (967), Expect = e-102, Method: Compositional matrix adjust. Identities = 205/477 (42%), Positives = 280/477 (58%), Gaps = 17/477 (3%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 + L+WLR+DLRI DN AL AAC A +A++IA+P QW++H +A + F +L + Sbjct: 1 MQLIWLRSDLRIDDNTALSAACQGGPA--VALWIASPGQWQRHDDAACKVDFWLRNLRLL 58 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL- 127 ++L I + + + L C + ++ + +N +Y +NE RD L Sbjct: 59 SQALEALNIPLLVRTTDTWREVPQVLLEACREHQIGTVHWNEEYGVNETLRDSAARALLE 118 Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIR--LT 185 Q V + D +L PGS+L Q ++V++ F++ +++L RSLP A R Sbjct: 119 QSGVATHTHLDQLLFKPGSVLTRGGQYFQVFSQFKRVCLEHL----HRSLPARAQRPKRQ 174 Query: 186 GPVTPSNIP-----RFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ 240 P+ ++ P F P Q++ +P GE+ A L +F E V Y + RD+PA Sbjct: 175 APLDIASDPIPEQIDGFAIPPQSLRDHWPAGEEEAQRRLSRFIDETVEDYPQLRDLPAKA 234 Query: 241 GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPS 300 GTSQLSPYL+ GV+SPRQC + +G +W+NEL+WREFY+H++ YP Sbjct: 235 GTSQLSPYLAAGVISPRQCLHAALASNHGEFDSGNAGVQTWVNELLWREFYKHILVGYPQ 294 Query: 301 VCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASF 360 V + F TE + W L+AWKQG TGFPIIDAAMRQL GWMHNRLRMI A F Sbjct: 295 VSRHRAFRVHTEALPWRNAPDDLEAWKQGRTGFPIIDAAMRQLLETGWMHNRLRMIVAMF 354 Query: 361 LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDP 420 L K+LL+DWR GE +FM L+DGDLA+NNGGWQW+ASTG D+VPYFRIFNPT Q +RFDP Sbjct: 355 LSKNLLIDWREGERHFMRHLIDGDLAANNGGWQWSASTGTDAVPYFRIFNPTTQSQRFDP 414 Query: 421 QGTFIRHWLPELNNVPTQYIHAPHSWLD---KNDLSLNYPLPIVDHKKACHHTLNQY 474 +GTFIR WLPEL + + IH P D N+ S NY PIVD + L+ + Sbjct: 415 KGTFIRQWLPELQAMDEKTIHRPVKSADLFVTNNYSSNYTSPIVDLDSSRQRALDAF 471 >gi|91794189|ref|YP_563840.1| deoxyribodipyrimidine photolyase [Shewanella denitrificans OS217] gi|91716191|gb|ABE56117.1| Deoxyribodipyrimidine photo-lyase type I [Shewanella denitrificans OS217] Length = 497 Score = 376 bits (965), Expect = e-102, Method: Compositional matrix adjust. Identities = 205/485 (42%), Positives = 278/485 (57%), Gaps = 22/485 (4%) Query: 11 LVWLRNDLRITDNKALYAACHNSD---AKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67 L+W RNDLR+ DN AL AAC + KV AV++ TP+QW+ H ++ Q FI L Sbjct: 18 LMWFRNDLRLGDNPALNAACEYAGVHGGKVRAVYLVTPKQWQHHHVAPMQIDFIRRHLEL 77 Query: 68 VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127 + +SL GI FDD+ L Y + ++ +F ++ EINE RRD L + Sbjct: 78 LARSLGALGIPLDVLYGQVFDDTAALLVDYVNEHQIGAIFAGKEPEINEQRRDNAL---I 134 Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187 + LL PG++LN + MYKV+TPF K Q + A ++ LPVP G Sbjct: 135 ASGLNLTLLQQDCLLAPGAVLNLSGDMYKVFTPFSKKWKQ--IAASMQILPVPVPAPVGS 192 Query: 188 VTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSP 247 P FD P ++ + + GE A IL +F + V Y RD PA +GTS+LSP Sbjct: 193 AITQIAPIVFDCPMRSSE-AWQAGEGAAKRILERFLNQNVAEYQVLRDFPAEEGTSRLSP 251 Query: 248 YLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPF 307 YL++G++SP+QC + + F + L+ S A +WLNEL+WREFYRHL+ +P + MG F Sbjct: 252 YLALGIISPKQCVAAILQRFPEALVDYTSPAKTWLNELMWREFYRHLLVAFPRLSMGHNF 311 Query: 308 IPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLV 367 + I+W D AW +G TG+P++DAAMRQLN GWMHNRLRM+ ASFL K LL+ Sbjct: 312 NALGDGIKWRNDKAEFNAWCEGRTGYPLVDAAMRQLNQTGWMHNRLRMLVASFLTKHLLI 371 Query: 368 DWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRH 427 DWR GE+YF QL+DGDLA+NNGGWQW+A TG D+ PYFR+F+P Q +FD FI+ Sbjct: 372 DWRWGEQYFRQQLIDGDLAANNGGWQWSAGTGCDAQPYFRVFSPLSQSAKFDSDCEFIKR 431 Query: 428 WLPELNNVPTQYIH----APHSWLDKNDL---------SLNYPLPIVDHKKACHHTLNQY 474 ++PEL+ V + IH + K DL S YP PIV+H A + Sbjct: 432 FVPELSEVSNKAIHEIKCSAAYEAAKVDLFAPPELEGKSATYPAPIVEHSFARKRAIEVL 491 Query: 475 YAAKK 479 A KK Sbjct: 492 SALKK 496 >gi|107099673|ref|ZP_01363591.1| hypothetical protein PaerPA_01000691 [Pseudomonas aeruginosa PACS2] gi|254244448|ref|ZP_04937770.1| deoxyribodipyrimidine photolyase [Pseudomonas aeruginosa 2192] gi|126197826|gb|EAZ61889.1| deoxyribodipyrimidine photolyase [Pseudomonas aeruginosa 2192] Length = 481 Score = 376 bits (965), Expect = e-102, Method: Compositional matrix adjust. Identities = 198/481 (41%), Positives = 281/481 (58%), Gaps = 22/481 (4%) Query: 5 TAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYAS 64 + ++L+W R DLR TDN AL AA +A+++ +P QWR+H + + F + Sbjct: 2 NGLPMNLIWFRCDLRTTDNSALLAAADGR--PCVALYLLSPAQWREHDDAPCKVDFWLRN 59 Query: 65 LLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLE 124 L ++Q+ L+ I C ++ + E + C + V + N++Y +NE RRD+ + Sbjct: 60 LGELQRQLAALNIPLLVRDCGHWRQAPEVIGRLCRELGVGAVHVNQEYGVNEERRDQAVG 119 Query: 125 KRLQHRVIC-KSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIR 183 +RL+ + + S D + PGS+L ++V++ FRK + L QA +P +R Sbjct: 120 QRLREQGVAFHSHLDQLFFAPGSVLTRTGGYFQVFSQFRKVCHERLYQA------LPGVR 173 Query: 184 ----------LTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQ 233 L P +P F P ++ ++P GE+ A LR F + + Y E+ Sbjct: 174 PRPQPQPPHALASDPLPDAVP-AFPRPADSLRRLWPAGEEVAQERLRDFADQHLADYHER 232 Query: 234 RDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRH 293 RD PA+ GTSQLSPYL+ GVLSPRQC + + GA +W+NEL+WREFY+H Sbjct: 233 RDFPALPGTSQLSPYLAAGVLSPRQCLDAALVANRGEFSGGQQGAATWINELLWREFYKH 292 Query: 294 LMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRL 353 ++ YP V +PF TE + W + L+AW+QG TG PIIDAAMRQL GWMHNRL Sbjct: 293 ILVGYPRVSRHRPFREETEALRWRQAPAELEAWQQGRTGIPIIDAAMRQLLATGWMHNRL 352 Query: 354 RMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTI 413 RM+ A FL K+LL+DWR GE +FM L+DGDLA+NNGGWQW+ASTG D+VPYFR+FNP Sbjct: 353 RMVVAMFLSKNLLIDWREGERWFMRHLIDGDLAANNGGWQWSASTGTDAVPYFRLFNPLS 412 Query: 414 QGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQ 473 Q +RFDP+G FIRHWLPEL + + IH P S ++YP P+VD K + L Sbjct: 413 QSERFDPRGEFIRHWLPELAGLERKAIHDPSSL--GLFAGVDYPRPMVDLKASRERALAA 470 Query: 474 Y 474 + Sbjct: 471 F 471 >gi|113969509|ref|YP_733302.1| deoxyribodipyrimidine photo-lyase type I [Shewanella sp. MR-4] gi|113884193|gb|ABI38245.1| Deoxyribodipyrimidine photo-lyase type I [Shewanella sp. MR-4] Length = 493 Score = 375 bits (964), Expect = e-102, Method: Compositional matrix adjust. Identities = 204/469 (43%), Positives = 280/469 (59%), Gaps = 21/469 (4%) Query: 11 LVWLRNDLRITDNKALYAAC----HNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 L+W R DLR+TDN+AL AAC AK+ A++IATP QW H ++ Q FI + Sbjct: 13 LMWFRQDLRLTDNQALTAACDWVRQVPGAKLRAIYIATPSQWLSHDMAPIQIDFIQRHVN 72 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 + + L+ GI F+ Q +F + +L SYC + V ++F R+ EINE +RD+ Sbjct: 73 LLAQGLASLGIEFELIQLDSFKEVPAFLASYCEKLGVERVFAGREPEINEQKRDQAC--- 129 Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 L + D+ LLPPG++LN + MYKV+TPF + + + + L VPA G Sbjct: 130 LDVGIPLVLSDEHCLLPPGTVLNLSGDMYKVFTPFSRKWREVAAKRAILPLAVPAP--LG 187 Query: 187 PVTPSNIPRFFD--YPFQA---IDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQG 241 P+ P P F +PF + + GE A IL F ++K Y + RD PA++G Sbjct: 188 PMLPEPKPISFKERFPFTSKLTSSEQWAAGEGQAKRILTAFIQQKAQDYKQDRDFPALEG 247 Query: 242 TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSV 301 TS +SPYL++GVLSPRQC L F ++++ S +WLNELIWREFYRHL+ +P + Sbjct: 248 TSVISPYLALGVLSPRQCIAALLGRFPEVIVDDTSPGRTWLNELIWREFYRHLLVAFPDL 307 Query: 302 CMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFL 361 G F + ++W + AW +G TG+PI+DAAMRQLN GWMHNRLRM+ ASFL Sbjct: 308 SKGHNFNRQADHVQWRNNQAEFLAWCEGKTGYPIVDAAMRQLNQTGWMHNRLRMVVASFL 367 Query: 362 VKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQ 421 K LL+DWR GE YF L+DGDLA+NNGGWQW+A G D+ PYFRIFNP Q ++FDP Sbjct: 368 TKHLLIDWRWGERYFRQHLIDGDLAANNGGWQWSAGCGCDAQPYFRIFNPISQSEKFDPD 427 Query: 422 GTFIRHWLPELNNVPTQYIHAPH-----SWLDKNDLSLN--YPLPIVDH 463 G+FIR +LPEL + + +H P+ S + L + YP IV+H Sbjct: 428 GSFIRKYLPELASWGIKRLHQPNMQKTPSLFEVPTLESDSAYPYAIVEH 476 >gi|296391481|ref|ZP_06880956.1| deoxyribodipyrimidine photolyase [Pseudomonas aeruginosa PAb1] Length = 481 Score = 375 bits (964), Expect = e-102, Method: Compositional matrix adjust. Identities = 197/481 (40%), Positives = 281/481 (58%), Gaps = 22/481 (4%) Query: 5 TAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYAS 64 + ++L+W R DLR TDN AL AA +A+++ +P QWR+H + + F + Sbjct: 2 NGLPMNLIWFRCDLRTTDNSALLAAADGR--PCVALYLLSPAQWREHDDAPCKVDFWLRN 59 Query: 65 LLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLE 124 L ++Q+ L+ I C ++ + E + C + + + N++Y +NE RRD+ + Sbjct: 60 LGELQRQLAALNIPLLVRDCGHWRQAPEVIGRLCRELGIGAVHVNQEYGVNEERRDQAVG 119 Query: 125 KRLQHRVIC-KSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIR 183 +RL+ + + S D + PGS+L ++V++ FRK + L QA +P +R Sbjct: 120 QRLREQGVAFHSHLDQLFFAPGSVLTRTGGYFQVFSQFRKVCHERLYQA------LPGVR 173 Query: 184 ----------LTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQ 233 L P +P F P ++ ++P GE+ A LR F + + Y E+ Sbjct: 174 PRPQPQPPHALASDPLPDAVP-AFPRPADSLRRLWPAGEEVAQERLRDFADQHLADYHER 232 Query: 234 RDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRH 293 RD PA+ GTSQLSPYL+ GVLSPRQC + + GA +W+NEL+WREFY+H Sbjct: 233 RDFPALPGTSQLSPYLAAGVLSPRQCLDAALVANRGEFSGGQQGAATWINELLWREFYKH 292 Query: 294 LMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRL 353 ++ YP V +PF TE + W + L+AW+QG TG PIIDAAMRQL GWMHNRL Sbjct: 293 ILVGYPRVSRHRPFREETEALRWRQAPAELEAWQQGRTGIPIIDAAMRQLLATGWMHNRL 352 Query: 354 RMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTI 413 RM+ A FL K+LL+DWR GE +FM L+DGDLA+NNGGWQW+ASTG D+VPYFR+FNP Sbjct: 353 RMVVAMFLSKNLLIDWREGERWFMRHLIDGDLAANNGGWQWSASTGTDAVPYFRLFNPLS 412 Query: 414 QGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQ 473 Q +RFDP+G FIRHWLPEL + + IH P S ++YP P+VD K + L Sbjct: 413 QSERFDPRGEFIRHWLPELAGLERKAIHDPSSL--GLFAGVDYPRPMVDLKASRERALAA 470 Query: 474 Y 474 + Sbjct: 471 F 471 >gi|116052805|ref|YP_793122.1| deoxyribodipyrimidine photolyase [Pseudomonas aeruginosa UCBPP-PA14] gi|115588026|gb|ABJ14041.1| deoxyribodipyrimidine photolyase [Pseudomonas aeruginosa UCBPP-PA14] Length = 481 Score = 375 bits (964), Expect = e-102, Method: Compositional matrix adjust. Identities = 197/481 (40%), Positives = 281/481 (58%), Gaps = 22/481 (4%) Query: 5 TAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYAS 64 + ++L+W R DLR TDN AL AA +A+++ +P QWR+H + + F + Sbjct: 2 NGLPMNLIWFRCDLRTTDNSALLAAADGR--PCVALYLLSPAQWREHDDAPCKVDFWLRN 59 Query: 65 LLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLE 124 L ++Q+ L+ I C ++ + E + C + + + N++Y +NE RRD+ + Sbjct: 60 LGELQRQLAALNIPLLVRDCGHWRQAPEVIGRLCRELGIGAVHVNQEYGVNEERRDQAVG 119 Query: 125 KRLQHRVIC-KSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIR 183 +RL+ + + S D + PGS+L ++V++ FRK + L QA +P +R Sbjct: 120 QRLREQGVAFHSHLDQLFFAPGSVLTRTGGYFQVFSQFRKVCHERLYQA------LPGVR 173 Query: 184 ----------LTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQ 233 L P +P F P ++ ++P GE+ A LR F + + Y E+ Sbjct: 174 PRPQPQPPHALASDPLPDAVP-AFPRPADSLRRLWPAGEEVAQERLRGFADQHLADYHER 232 Query: 234 RDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRH 293 RD PA+ GTSQLSPYL+ GVLSPRQC + + GA +W+NEL+WREFY+H Sbjct: 233 RDFPALPGTSQLSPYLAAGVLSPRQCLDAALVANRGEFSGGQQGAATWINELLWREFYKH 292 Query: 294 LMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRL 353 ++ YP V +PF TE + W + L+AW+QG TG PIIDAAMRQL GWMHNRL Sbjct: 293 ILVGYPRVSRHRPFREETEALRWRQAPAELEAWQQGRTGIPIIDAAMRQLLATGWMHNRL 352 Query: 354 RMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTI 413 RM+ A FL K+LL+DWR GE +FM L+DGDLA+NNGGWQW+ASTG D+VPYFR+FNP Sbjct: 353 RMVVAMFLSKNLLIDWREGERWFMRHLIDGDLAANNGGWQWSASTGTDAVPYFRLFNPLS 412 Query: 414 QGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQ 473 Q +RFDP+G FIRHWLPEL + + IH P S ++YP P+VD K + L Sbjct: 413 QSERFDPRGEFIRHWLPELAGLERKAIHDPSSL--GLFAGVDYPRPMVDLKASRERALAA 470 Query: 474 Y 474 + Sbjct: 471 F 471 >gi|15599855|ref|NP_253349.1| deoxyribodipyrimidine photolyase [Pseudomonas aeruginosa PAO1] gi|9950915|gb|AAG08047.1|AE004880_3 deoxyribodipyrimidine photolyase [Pseudomonas aeruginosa PAO1] Length = 481 Score = 375 bits (963), Expect = e-102, Method: Compositional matrix adjust. Identities = 198/481 (41%), Positives = 281/481 (58%), Gaps = 22/481 (4%) Query: 5 TAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYAS 64 + ++L+W R DLR TDN AL AA +A+++ +P QWR+H + + F + Sbjct: 2 NGLPMNLIWFRCDLRTTDNSALLAAADGR--PCLALYLLSPAQWREHDDAPCKVDFWLRN 59 Query: 65 LLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLE 124 L ++Q+ L+ I C ++ + E + C + V + N++Y +NE RRD+ + Sbjct: 60 LGELQRQLAALNIPLLVRDCGHWRQAPEVIGRLCRELGVGAVHVNQEYGVNEERRDQAVG 119 Query: 125 KRLQHRVIC-KSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIR 183 +RL+ + + S D + PGS+L ++V++ FRK + L QA +P +R Sbjct: 120 QRLREQGVAFHSHLDQLFFAPGSVLTRTGGYFQVFSQFRKVCHERLYQA------LPGVR 173 Query: 184 ----------LTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQ 233 L P +P F P ++ ++P GE+ A LR F + + Y E+ Sbjct: 174 PRPQPQPPHALASDPLPDAVP-AFPRPADSLRRLWPAGEEVAQERLRDFADQHLADYHER 232 Query: 234 RDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRH 293 RD PA+ GTSQLSPYL+ GVLSPRQC + + GA +W+NEL+WREFY+H Sbjct: 233 RDFPALPGTSQLSPYLAAGVLSPRQCLDAALVANRGEFSGGQQGAATWINELLWREFYKH 292 Query: 294 LMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRL 353 ++ YP V +PF TE + W + L+AW+QG TG PIIDAAMRQL GWMHNRL Sbjct: 293 ILVGYPRVSRHRPFREETEALRWRQAPAELEAWQQGRTGIPIIDAAMRQLLATGWMHNRL 352 Query: 354 RMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTI 413 RM+ A FL K+LL+DWR GE +FM L+DGDLA+NNGGWQW+ASTG D+VPYFR+FNP Sbjct: 353 RMVVAMFLSKNLLIDWREGERWFMRHLIDGDLAANNGGWQWSASTGTDAVPYFRLFNPLS 412 Query: 414 QGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQ 473 Q +RFDP+G FIRHWLPEL + + IH P S ++YP P+VD K + L Sbjct: 413 QSERFDPRGEFIRHWLPELAGLERKAIHDPSSL--GLFAGVDYPRPMVDLKASRERALAA 470 Query: 474 Y 474 + Sbjct: 471 F 471 >gi|325273235|ref|ZP_08139517.1| deoxyribodipyrimidine photolyase [Pseudomonas sp. TJI-51] gi|324101641|gb|EGB99205.1| deoxyribodipyrimidine photolyase [Pseudomonas sp. TJI-51] Length = 473 Score = 375 bits (963), Expect = e-101, Method: Compositional matrix adjust. Identities = 204/478 (42%), Positives = 284/478 (59%), Gaps = 23/478 (4%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 +HL WLR+DLRI DN AL AA +A+++ +P QWR H + + F +L + Sbjct: 1 MHLTWLRSDLRIDDNTALSAATER--GPTVALWLVSPGQWRAHDDADCKVDFWLRNLRDL 58 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128 +++L + I + +D + + + C Q +V + +N +Y INE RRD K L+ Sbjct: 59 RQALEKLNIPLLIRKIDTWDQAPQAVLDVCQQHQVQSVHWNEEYGINEQRRDAATRKLLE 118 Query: 129 H-RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL--- 184 V S+ D +L PG+IL + ++V++ F+K +++L RSLP A R+ Sbjct: 119 KASVQAHSYLDQLLFRPGTILTRSGDYFQVFSQFKKTCLEHL----HRSLPALARRVKRQ 174 Query: 185 ------TGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPA 238 + P+ P +I F P +A+ +P GE +A L +F E + Y++ RD+PA Sbjct: 175 AALKIHSDPI-PQDIDGFEKTP-RALREHWPAGEAHAQQRLSQFLDETIDDYLKTRDLPA 232 Query: 239 IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFY 298 + GTSQLSPYL+ GV+SPRQC + +G +W+NEL+WREFY+H++ Y Sbjct: 233 MPGTSQLSPYLAAGVISPRQCLHGALAANKGEFDSGSTGVQTWVNELLWREFYKHILTGY 292 Query: 299 PSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITA 358 P V + F TE + W L+AW+QG TGFPIIDAAMRQL GWMHNRLRMI A Sbjct: 293 PQVSRHRAFRSHTEALPWRDAPGDLEAWEQGRTGFPIIDAAMRQLLHTGWMHNRLRMIVA 352 Query: 359 SFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRF 418 FL K+LL+DWR GE +FM L+DGDLA+NNGGWQW+ASTG DSVPYFRIFNP Q +RF Sbjct: 353 MFLSKNLLIDWRKGERHFMRHLIDGDLAANNGGWQWSASTGTDSVPYFRIFNPVSQSQRF 412 Query: 419 DPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDL--SLNYPLPIVDHKKACHHTLNQY 474 DP+G FIRHWLPEL ++ + IH P + DL +Y PIVD + L + Sbjct: 413 DPEGRFIRHWLPELRDIDEKTIHGP---MKSTDLFAGNSYHNPIVDLGSSRQRALEAF 467 >gi|146282327|ref|YP_001172480.1| deoxyribodipyrimidine photolyase [Pseudomonas stutzeri A1501] gi|145570532|gb|ABP79638.1| deoxyribodipyrimidine photolyase [Pseudomonas stutzeri A1501] Length = 476 Score = 375 bits (963), Expect = e-101, Method: Compositional matrix adjust. Identities = 198/474 (41%), Positives = 279/474 (58%), Gaps = 15/474 (3%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 L+WLR+DLR +DN AL +A + +AV++ TP QW H +A + F +L+++ Sbjct: 2 TQLIWLRSDLRTSDNTALASAM--AAGPTVAVYLITPGQWLAHDDAACKVDFWLRNLVEL 59 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128 L + + + + L C + V +L YN +Y +NE RRD+ + RL+ Sbjct: 60 AGRLQALNVPLLIRDVEEWQAAPDALLKLCQELAVQRLHYNGEYGVNEQRRDQAVAARLR 119 Query: 129 HRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPA----IR 183 I + + D +L PGS+L + +KV+ FR+A + L + + PA + Sbjct: 120 AAGIDVRRYLDQLLFAPGSVLTQSGGYFKVFGQFRRACLARLSMSLPACVAPPAPQHPMT 179 Query: 184 LTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS 243 + V P + R FD P + ++P GE A H L F + ++ Y ++RD+PA GTS Sbjct: 180 VASDVPPDEV-RGFDRPSDYLRTLWPAGETFAQHRLAAFIGDDLHQYHQRRDLPAEPGTS 238 Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCM 303 QLS YL+ GV+S RQC + L +GA +W+NEL+WREFY+H++ YP V M Sbjct: 239 QLSAYLAAGVISIRQCLHAAVASNRGELDSGSAGATTWINELLWREFYKHILVGYPRVSM 298 Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363 + F TE + W + + LQAW++G TGFPIIDAAMRQL GWMHNRLRM+TA FL K Sbjct: 299 HRAFRAETEALPWRRATDELQAWQEGRTGFPIIDAAMRQLRETGWMHNRLRMVTAMFLSK 358 Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423 +LL+DWR GE +FM L+DGDLA+NNGGWQW+ASTG DSVPYFR+FNP Q +RFDP G Sbjct: 359 NLLIDWREGERWFMRHLIDGDLAANNGGWQWSASTGTDSVPYFRLFNPISQSQRFDPDGQ 418 Query: 424 FIRHWLPELNNVPTQYIHAP---HSWLDKNDLSLNYPLPIVDHKKACHHTLNQY 474 F+R WLPEL + + IH P S K D YP PI+D ++ L+ + Sbjct: 419 FLRRWLPELQGLGKREIHNPSTQRSLFGKAD----YPAPIIDLGESRARALDAF 468 >gi|218893757|ref|YP_002442626.1| deoxyribodipyrimidine photolyase [Pseudomonas aeruginosa LESB58] gi|218773985|emb|CAW29800.1| deoxyribodipyrimidine photolyase [Pseudomonas aeruginosa LESB58] Length = 481 Score = 374 bits (961), Expect = e-101, Method: Compositional matrix adjust. Identities = 198/481 (41%), Positives = 281/481 (58%), Gaps = 22/481 (4%) Query: 5 TAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYAS 64 + ++L+W R DLR TDN AL AA +A+++ +P QWR+H + + F + Sbjct: 2 NGLPMNLIWFRCDLRTTDNSALLAAADGR--PCVALYLLSPAQWREHDDAPCKVDFWLRN 59 Query: 65 LLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLE 124 L ++Q+ L+ I C ++ + E + C + V + N++Y +NE RRD+ + Sbjct: 60 LGELQRQLAALNIPLLVRDCGHWRQAPEVIGRLCRELGVGAVHVNQEYGVNEERRDQAVG 119 Query: 125 KRLQHRVIC-KSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIR 183 +RL+ + + S D + PGS+L ++V++ FRK + L QA +P +R Sbjct: 120 QRLREQGVAFHSHLDQLFFAPGSVLTRTGGYFQVFSQFRKVCHERLYQA------LPGVR 173 Query: 184 ----------LTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQ 233 L P +P F P ++ ++P GE+ A LR F + + Y E+ Sbjct: 174 PRPQPQPPHALASDPLPDAVP-AFPRPADSLRRLWPAGEEVAQERLRDFADQHLADYHER 232 Query: 234 RDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRH 293 RD PA+ GTSQLSPYL+ GVLSPRQC + + GA +W+NEL+WREFY+H Sbjct: 233 RDFPALPGTSQLSPYLAAGVLSPRQCLDAALVANRGEFSGGQQGAATWINELLWREFYKH 292 Query: 294 LMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRL 353 ++ YP V +PF TE + W + L+AW+QG TG PIIDAAMRQL GWMHNRL Sbjct: 293 ILVGYPRVSRHRPFREETEALCWRQAPAELEAWQQGRTGIPIIDAAMRQLLATGWMHNRL 352 Query: 354 RMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTI 413 RM+ A FL K+LL+DWR GE +FM L+DGDLA+NNGGWQW+ASTG D+VPYFR+FNP Sbjct: 353 RMVVAMFLSKNLLIDWREGERWFMRHLIDGDLAANNGGWQWSASTGTDAVPYFRLFNPLS 412 Query: 414 QGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQ 473 Q +RFDP+G FIRHWLPEL + + IH P S ++YP P+VD K + L Sbjct: 413 QSERFDPRGEFIRHWLPELAGLERKAIHDPSSL--GLFAGVDYPRPMVDLKASRERALAA 470 Query: 474 Y 474 + Sbjct: 471 F 471 >gi|170723611|ref|YP_001751299.1| deoxyribodipyrimidine photo-lyase [Pseudomonas putida W619] gi|169761614|gb|ACA74930.1| Deoxyribodipyrimidine photo-lyase [Pseudomonas putida W619] Length = 480 Score = 374 bits (961), Expect = e-101, Method: Compositional matrix adjust. Identities = 201/475 (42%), Positives = 282/475 (59%), Gaps = 17/475 (3%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 + L+WLR+DLR+ DN AL AAC A +A+++A+P QW+ H +A + F +L + Sbjct: 1 MQLIWLRSDLRVNDNTALSAACERGPA--VALWLASPGQWQAHDDAACKVDFWLRNLRDL 58 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128 ++SL I + +D + + L C Q ++ + +N +Y INE RD+ L+ Sbjct: 59 RQSLEGLNIPLLVRRIDTWDQAAQTLLDVCRQHKIEAVHWNDEYGINENSRDQATRALLE 118 Query: 129 HR-VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLP--VPAIRLT 185 V ++ D +L PGS+L + ++V++ F+K +++L RSLP P ++ Sbjct: 119 ASGVQAHNYLDQLLFRPGSVLTRSGDYFQVFSQFKKVCLEHL----HRSLPSQAPRVKRQ 174 Query: 186 GPVTPSNIP-----RFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ 240 PV ++ P FD P +A+ +P GE A L +F E + Y RD+PA Sbjct: 175 APVGIASDPIPQHIEGFDKPSRALSEHWPAGEDEAQARLSRFVDETIEDYHHLRDLPAKP 234 Query: 241 GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPS 300 GTSQLS YL+ GV+SPRQC + +G +W+NEL+WREFY+H++ YP Sbjct: 235 GTSQLSAYLAAGVISPRQCLHAALASNRGEFDSGSTGTQTWINELLWREFYKHILTGYPQ 294 Query: 301 VCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASF 360 V + F TE + W L+AW+QG TGFPIIDAAMRQL GWMHNRLRMI A F Sbjct: 295 VSRHRAFRTHTELLPWRDAPADLEAWEQGRTGFPIIDAAMRQLLHTGWMHNRLRMIVAMF 354 Query: 361 LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDP 420 L K+LL+DWR+GE +FM L+DGDLA+NNGGWQW+ASTG D+VPYFRIFNP Q +RFDP Sbjct: 355 LSKNLLIDWRLGERHFMRHLIDGDLAANNGGWQWSASTGTDAVPYFRIFNPVSQSQRFDP 414 Query: 421 QGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLN-YPLPIVDHKKACHHTLNQY 474 QG FIRHW+PEL + + IH P +K+ + N Y PIVD + L + Sbjct: 415 QGHFIRHWVPELRGLDEKSIHQPTQ--NKDLFADNSYHRPIVDLSSSRQRALEAF 467 >gi|92112598|ref|YP_572526.1| deoxyribodipyrimidine photo-lyase type I [Chromohalobacter salexigens DSM 3043] gi|91795688|gb|ABE57827.1| deoxyribodipyrimidine photo-lyase type I [Chromohalobacter salexigens DSM 3043] Length = 473 Score = 372 bits (956), Expect = e-101, Method: Compositional matrix adjust. Identities = 200/472 (42%), Positives = 268/472 (56%), Gaps = 13/472 (2%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 + +VW R+DLR DN+AL AA VIAVF+ + QW++H A + F + + Sbjct: 4 LQMVWFRSDLRTLDNRALSAAAER--GPVIAVFLTSIPQWQRHDHGANKIDFWLRGVAAL 61 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128 ++ LS I + +D++ + L Q T L +NR+Y +NE RRD +E+ Sbjct: 62 REHLSGLNIPLLQRRIETYDEAPDALLKLAHQHGATALHFNREYPLNERRRDAAVERAFH 121 Query: 129 HRVIC-KSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLV--QADLRSLPVPAIRLT 185 I D+V PG +L + Y V+TPF KA + L + L P P RL Sbjct: 122 DAGIAVTGHTDAVAYAPGELLTGKGEPYSVFTPFAKAWHRQLEGHRLALTHAPAPQTRLA 181 Query: 186 ---GPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGT 242 P +P D P A +P G++ A L +F + + +Y QRD PA+ GT Sbjct: 182 IEADPAPSRELPDACDTPLDA--SRWPAGQEEAGDRLERFLRFRGRHYRRQRDFPALPGT 239 Query: 243 SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVC 302 S+LSPYL++G+LS RQC + + L +G +W NELIWREFY H+ A +P + Sbjct: 240 SELSPYLALGMLSHRQCLQAVMSDNDGHLADGDAGLTAWANELIWREFYLHIAASFPDIS 299 Query: 303 MGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLV 362 +PF P T + W D +AW +G TG+P++DAAMRQL GWMHNRLRM+TA FL Sbjct: 300 RHRPFQPHTRDLAWRDDDAGFRAWCEGRTGYPLVDAAMRQLVQCGWMHNRLRMVTAMFLS 359 Query: 363 KDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQG 422 K LL+DWR GE +FM L+DGD ASNNGGWQWAASTG D+ PYFRIFNPT Q +RFDP+G Sbjct: 360 KHLLIDWRRGEAFFMRHLVDGDFASNNGGWQWAASTGTDAAPYFRIFNPTTQAERFDPEG 419 Query: 423 TFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQY 474 FI HWLPEL + + P S + D Y LPIVDHK A L+ + Sbjct: 420 RFIAHWLPELAPLAVKSRFFP-SEAQRRD--TGYTLPIVDHKAARQRALDAF 468 >gi|319427180|gb|ADV55254.1| Deoxyribodipyrimidine photo-lyase [Shewanella putrefaciens 200] Length = 493 Score = 372 bits (955), Expect = e-101, Method: Compositional matrix adjust. Identities = 206/492 (41%), Positives = 289/492 (58%), Gaps = 18/492 (3%) Query: 3 ATTAMSVHLVWLRNDLRITDNKALYAACHNSDAK---VIAVFIATPEQWRQHGISARQSH 59 AT+ + L+W R DLR+ DN+AL AAC + A+ + A++IATP QW H ++ Q Sbjct: 9 ATSNVGDTLMWFRQDLRLADNQALTAACDWARAQGTALRAIYIATPIQWACHDVAPIQLD 68 Query: 60 FIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRR 119 FI + + K L GI F+ Q F D +++ YC Q +T++F + EINE R Sbjct: 69 FIERHINLLAKGLGCLGIQFELIQLERFADIPQFMLDYCQQHNITRVFAGSEPEINERVR 128 Query: 120 DKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPV 179 D+ + V D+ LL PG++LN + +MY+V+TPF + + + + L V Sbjct: 129 DQAC---IDAGVPLLLTDEHCLLAPGTVLNLSGEMYRVFTPFSRKWREIAARHAILPLGV 185 Query: 180 PAIRLTGPVTPSNIPRFFDYPFQAIDP-MFPIGEQNALHILRKFCKEKVYYYVEQRDIPA 238 PA GPV P P+ + + + GE A +L F ++KV Y + RD PA Sbjct: 186 PAP--LGPVLPE--PKALNLAVNKVSSEQWGAGEGQAKRLLCDFVQQKVQDYKQDRDFPA 241 Query: 239 IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFY 298 + GTS +SPYL+IGVLS RQC L + F ++++ S +WLNEL+WREFYRHL+ + Sbjct: 242 LDGTSCISPYLAIGVLSARQCVAALLQRFPEVIVDDTSLGRTWLNELVWREFYRHLLVAF 301 Query: 299 PSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITA 358 P + F ++++W + +AW +G TG+PI+DAAMRQLN GWMHNRLRM+ A Sbjct: 302 PDLSKNHNFNRQADQVQWRNNIEEFKAWCEGRTGYPIVDAAMRQLNQTGWMHNRLRMVVA 361 Query: 359 SFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRF 418 SFL K LL+DWR GE YF +L+DGDLA+NNGGWQW+A G D+ PYFRIFNP Q ++F Sbjct: 362 SFLTKHLLIDWRWGERYFRQKLIDGDLAANNGGWQWSAGCGCDAQPYFRIFNPMSQSEKF 421 Query: 419 DPQGTFIRHWLPELNNVPTQYIHAPHS----WLDKNDL---SLNYPLPIVDHKKACHHTL 471 DP G+FIR +LPEL + + +H P++ L K L YP IVDH +A L Sbjct: 422 DPDGSFIRKYLPELASWGIKQLHQPNTAKTPLLFKQPLFAEQAAYPSAIVDHTEARVRAL 481 Query: 472 NQYYAAKKQSLL 483 + KK S L Sbjct: 482 SVLGVLKKASAL 493 >gi|237799740|ref|ZP_04588201.1| deoxyribodipyrimidine photolyase [Pseudomonas syringae pv. oryzae str. 1_6] gi|331022595|gb|EGI02652.1| deoxyribodipyrimidine photolyase [Pseudomonas syringae pv. oryzae str. 1_6] Length = 482 Score = 372 bits (954), Expect = e-101, Method: Compositional matrix adjust. Identities = 192/472 (40%), Positives = 275/472 (58%), Gaps = 7/472 (1%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 + L+WLR+DLR+ DN AL AA +AV++ +P QW H + + F +L+++ Sbjct: 1 MQLIWLRSDLRVHDNTALTAALQR--GPTLAVYLLSPAQWHSHDDADCKVDFWLRNLVEL 58 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128 +K+L + + + +D + E L + C + +V + N++Y +NE RRD+ +++ L+ Sbjct: 59 EKALGKLNVPLLIREADTWDKAPEVLSTLCKELKVEGVHLNQEYGVNETRRDQAVQQTLE 118 Query: 129 HRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187 I + D +L PGSIL ++V+T F+K L +A R + P + Sbjct: 119 KDGIHVTHYLDQLLFKPGSILTKTGNYFQVFTQFKKVCYTRLHEAMPRLVRTPPAQQPLS 178 Query: 188 VTPSNIP---RFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244 V IP + F P +A+ ++P GE A + F E++ YY RD PA GTSQ Sbjct: 179 VKSDAIPEQVKGFATPSKALRDLWPAGEAEASRRMAAFADEQISYYKTDRDFPAKPGTSQ 238 Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304 LS YL+ GV+SPRQC + G +W+NEL+WREFY+H + +P V Sbjct: 239 LSAYLAAGVISPRQCLHAALASNQGEFETGDVGTVTWINELLWREFYKHTLVGFPRVSRH 298 Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364 + F P TE ++W L AW++ TG PIIDAAMRQL GWMHNRLRM+ A FL K+ Sbjct: 299 RAFRPETEALKWRDAPDELLAWQEARTGLPIIDAAMRQLLETGWMHNRLRMVVAMFLTKN 358 Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424 LL+DWR GE +FM L+DGDLASNNGGWQW++STG DS PYFRIFNP Q +RFDP+G F Sbjct: 359 LLIDWREGERFFMRHLIDGDLASNNGGWQWSSSTGTDSAPYFRIFNPLSQSERFDPEGVF 418 Query: 425 IRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYA 476 I+ WLPEL ++ + +H P S + + +YP PIVD K+ L + A Sbjct: 419 IKRWLPELADLNKKQLHDPSS-IGGLFGAADYPKPIVDLSKSRARALAAFKA 469 >gi|146293808|ref|YP_001184232.1| deoxyribodipyrimidine photo-lyase [Shewanella putrefaciens CN-32] gi|145565498|gb|ABP76433.1| Deoxyribodipyrimidine photo-lyase type I [Shewanella putrefaciens CN-32] Length = 493 Score = 372 bits (954), Expect = e-101, Method: Compositional matrix adjust. Identities = 206/492 (41%), Positives = 289/492 (58%), Gaps = 18/492 (3%) Query: 3 ATTAMSVHLVWLRNDLRITDNKALYAACHNSDAK---VIAVFIATPEQWRQHGISARQSH 59 AT+ + L+W R DLR+ DN+AL AAC + A+ + A++IATP QW H ++ Q Sbjct: 9 ATSNVGDTLMWFRQDLRLADNQALTAACDWARAQGTALRAIYIATPIQWECHDVAPIQLD 68 Query: 60 FIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRR 119 FI + + K L GI F+ Q F D +++ YC Q +T++F + EINE R Sbjct: 69 FIERHINLLAKGLGCLGIQFELIQLERFADIPQFMLDYCQQHNITRVFAGSEPEINERVR 128 Query: 120 DKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPV 179 D+ + V D+ LL PG++LN + +MY+V+TPF + + + + L V Sbjct: 129 DQAC---IDAGVPLLLTDEHCLLAPGTVLNLSGEMYRVFTPFSRKWREIAARHAILPLGV 185 Query: 180 PAIRLTGPVTPSNIPRFFDYPFQAIDP-MFPIGEQNALHILRKFCKEKVYYYVEQRDIPA 238 PA GPV P P+ + + + GE A +L F ++KV Y + RD PA Sbjct: 186 PAP--LGPVLPE--PKALNLAVNKVSSEQWGAGEGQAKRLLCDFIQQKVQDYKQDRDFPA 241 Query: 239 IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFY 298 + GTS +SPYL+IGVLS RQC L + F ++++ S +WLNEL+WREFYRHL+ + Sbjct: 242 LDGTSCISPYLAIGVLSARQCVAALLQRFPEVIVDDTSLGRTWLNELVWREFYRHLLVAF 301 Query: 299 PSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITA 358 P + F ++++W + +AW +G TG+PI+DAAMRQLN GWMHNRLRM+ A Sbjct: 302 PDLSKNHNFNRQADQVQWRNNIEEFKAWCEGRTGYPIVDAAMRQLNQTGWMHNRLRMVVA 361 Query: 359 SFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRF 418 SFL K LL+DWR GE YF +L+DGDLA+NNGGWQW+A G D+ PYFRIFNP Q ++F Sbjct: 362 SFLTKHLLIDWRWGERYFRQKLIDGDLAANNGGWQWSAGCGCDAQPYFRIFNPMSQSEKF 421 Query: 419 DPQGTFIRHWLPELNNVPTQYIHAPHS----WLDKNDL---SLNYPLPIVDHKKACHHTL 471 DP G+FIR +LPEL + + +H P++ L K L YP IVDH +A L Sbjct: 422 DPDGSFIRKYLPELASWGIKQLHQPNTAKTPLLFKQPLFAEQAAYPSAIVDHTEARVRAL 481 Query: 472 NQYYAAKKQSLL 483 + KK S L Sbjct: 482 SVLGVLKKASAL 493 >gi|120598121|ref|YP_962695.1| deoxyribodipyrimidine photo-lyase [Shewanella sp. W3-18-1] gi|120558214|gb|ABM24141.1| Deoxyribodipyrimidine photo-lyase type I [Shewanella sp. W3-18-1] Length = 493 Score = 371 bits (953), Expect = e-100, Method: Compositional matrix adjust. Identities = 206/492 (41%), Positives = 289/492 (58%), Gaps = 18/492 (3%) Query: 3 ATTAMSVHLVWLRNDLRITDNKALYAACHNSDAK---VIAVFIATPEQWRQHGISARQSH 59 AT+ + L+W R DLR+ DN+AL AAC + A+ + A++IATP QW H ++ Q Sbjct: 9 ATSNVGDTLMWFRQDLRLADNQALTAACDWARAQGTALRAIYIATPIQWACHDVAPIQLD 68 Query: 60 FIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRR 119 FI + + K L GI F+ Q F D +++ YC Q +T++F + EINE R Sbjct: 69 FIERHINLLAKGLGCLGIQFELIQLERFADIPQFMLDYCQQHNITRVFAGSEPEINERVR 128 Query: 120 DKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPV 179 D+ + V D+ LL PG++LN + +MY+V+TPF + + + + L V Sbjct: 129 DQAC---IDAGVPLLLTDEHCLLAPGTVLNLSGEMYRVFTPFSRKWREIAARHAILPLGV 185 Query: 180 PAIRLTGPVTPSNIPRFFDYPFQAIDP-MFPIGEQNALHILRKFCKEKVYYYVEQRDIPA 238 PA GPV P P+ + + + GE A +L F ++KV Y + RD PA Sbjct: 186 PAP--LGPVLPE--PKALNLAVNKVSSEQWGAGEGQAKRLLCDFVQQKVQDYKQDRDFPA 241 Query: 239 IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFY 298 + GTS +SPYL+IGVLS RQC L + F ++++ S +WLNEL+WREFYRHL+ + Sbjct: 242 LDGTSCISPYLAIGVLSARQCVAALLQRFPEVIVDDTSLGRTWLNELVWREFYRHLLVAF 301 Query: 299 PSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITA 358 P + F ++++W + +AW +G TG+PI+DAAMRQLN GWMHNRLRM+ A Sbjct: 302 PDLSKNYNFNRQADQVQWRNNIEEFKAWCEGRTGYPIVDAAMRQLNQTGWMHNRLRMVVA 361 Query: 359 SFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRF 418 SFL K LL+DWR GE YF +L+DGDLA+NNGGWQW+A G D+ PYFRIFNP Q ++F Sbjct: 362 SFLTKHLLIDWRWGERYFRQKLIDGDLAANNGGWQWSAGCGCDAQPYFRIFNPMSQSEKF 421 Query: 419 DPQGTFIRHWLPELNNVPTQYIHAPHS----WLDKNDL---SLNYPLPIVDHKKACHHTL 471 DP G+FIR +LPEL + + +H P++ L K L YP IVDH +A L Sbjct: 422 DPDGSFIRKYLPELASWGIKQLHQPNTAKTPLLFKQPLFAEQAAYPSAIVDHTEARVRAL 481 Query: 472 NQYYAAKKQSLL 483 + KK S L Sbjct: 482 SVLGVLKKASAL 493 >gi|170727122|ref|YP_001761148.1| deoxyribodipyrimidine photo-lyase [Shewanella woodyi ATCC 51908] gi|169812469|gb|ACA87053.1| Deoxyribodipyrimidine photo-lyase [Shewanella woodyi ATCC 51908] Length = 469 Score = 371 bits (953), Expect = e-100, Method: Compositional matrix adjust. Identities = 193/463 (41%), Positives = 282/463 (60%), Gaps = 13/463 (2%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 L+W+R DLR DN AL A N A+FI+TP+QW H + + FI LLQ+++ Sbjct: 3 LLWIRRDLRCFDNPALMDAVAN--GCRYALFISTPQQWDLHHEAPIKLDFIRRHLLQLEQ 60 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130 L + G+ + ++F E L +C + + ++ N + E NE +RD+ L L Sbjct: 61 QLFELGVKLVHLTSTDFSAQSELLIRFCREHHIHRVLANSEPEFNEQQRDRSL---LSSG 117 Query: 131 VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTP 190 + + +D V+ P G +LN + +M+KV+TPF+KA ++++ + + + P L+ P++P Sbjct: 118 LDIEFYDCDVIAPRGRVLNQSGEMFKVFTPFKKAWLKHVREFGVECIGRPQ-GLSKPLSP 176 Query: 191 -------SNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS 243 ++ +P+ ++ ++ F KV Y E+RD PAI+GTS Sbjct: 177 PARDLIGELNSSSSLINSSSLSTSWPLADEVMEKVIPHFFSAKVCDYKERRDFPAIKGTS 236 Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCM 303 LSPYL+IG LSPR + +L + L+ AF WLNELIWR+FY+HL+ YP + Sbjct: 237 GLSPYLAIGALSPRTLYQQLLARYPQLIEDDNHPAFCWLNELIWRDFYKHLLFHYPRLSK 296 Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363 F+ K +W AW +G TG+P++DAAMRQL GWMHNRLRM+ ASFL K Sbjct: 297 QTSFLEKYAKTQWPGTQAEFDAWSKGETGYPLVDAAMRQLVRTGWMHNRLRMVVASFLTK 356 Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423 LLVDWR GE++FMS L+DGD ++NNGGWQWAASTG D+ PYFR+FNP +Q ++FDP G Sbjct: 357 HLLVDWRQGEQFFMSHLIDGDHSANNGGWQWAASTGCDAQPYFRVFNPILQSQKFDPNGD 416 Query: 424 FIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKA 466 FIR +LPELN++PT+YIH PH ++ K+ +S Y P+V+HK A Sbjct: 417 FIRKYLPELNDIPTKYIHFPHDYMAKHGVSDTYWPPVVEHKAA 459 >gi|313107322|ref|ZP_07793517.1| deoxyribodipyrimidine photolyase [Pseudomonas aeruginosa 39016] gi|310880019|gb|EFQ38613.1| deoxyribodipyrimidine photolyase [Pseudomonas aeruginosa 39016] Length = 476 Score = 371 bits (952), Expect = e-100, Method: Compositional matrix adjust. Identities = 196/477 (41%), Positives = 279/477 (58%), Gaps = 22/477 (4%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 ++L+W R DLR TDN AL AA +A+++ +P QWR+H + + F +L ++ Sbjct: 1 MNLIWFRCDLRTTDNSALLAAADGR--PCVALYLLSPAQWREHDDAPCKVDFWLRNLGEL 58 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128 Q+ L+ I C ++ + E + C + + + N++Y +NE RRD+ + +RL+ Sbjct: 59 QRQLAALNIPLLVRDCGHWRQAPEVIGRLCRELGIGAVHVNQEYGVNEERRDQAVGQRLR 118 Query: 129 HRVIC-KSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIR---- 183 + + S D + PGS+L ++V++ FRK + L QA +P +R Sbjct: 119 EQGVAFHSHLDQLFFAPGSVLTRTGGYFQVFSQFRKVCHERLYQA------LPGVRPRPQ 172 Query: 184 ------LTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIP 237 L P +P F P ++ ++P GE+ A LR F + + Y E+RD P Sbjct: 173 PQPPHALASDPLPDAVP-AFPRPADSLRRLWPAGEKVAQERLRDFADQHLADYHERRDFP 231 Query: 238 AIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAF 297 A+ GTSQLSPYL+ GVLSPRQC + + GA +W+NEL+WREFY+H++ Sbjct: 232 ALPGTSQLSPYLAAGVLSPRQCLDAALVANRGEFSGGQQGAATWINELLWREFYKHILVG 291 Query: 298 YPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMIT 357 YP V +PF TE + W + L+AW+QG TG IIDAAMRQL GWMHNRLRM+ Sbjct: 292 YPRVSRHRPFREETEALRWRQAPAELEAWQQGRTGITIIDAAMRQLLATGWMHNRLRMVV 351 Query: 358 ASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKR 417 A FL K+LL+DWR GE +FM L+DGDLA+NNGGWQW+ASTG D+VPYFR+FNP Q +R Sbjct: 352 AMFLSKNLLIDWREGERWFMRHLIDGDLAANNGGWQWSASTGTDAVPYFRLFNPLSQSER 411 Query: 418 FDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQY 474 FDP+G FIRHWLPEL + + IH P S ++YP P+VD K + L + Sbjct: 412 FDPRGEFIRHWLPELAGLERKAIHDPSSL--GLFAGVDYPRPMVDLKASRERALAAF 466 >gi|149377119|ref|ZP_01894869.1| Deoxyribodipyrimidine photolyase [Marinobacter algicola DG893] gi|149358655|gb|EDM47127.1| Deoxyribodipyrimidine photolyase [Marinobacter algicola DG893] Length = 466 Score = 370 bits (951), Expect = e-100, Method: Compositional matrix adjust. Identities = 193/473 (40%), Positives = 272/473 (57%), Gaps = 12/473 (2%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 LVW RNDLRI DN AL AAC +V A FI TP QW++H S + F+ + Sbjct: 2 TQLVWFRNDLRIADNAALTAACKQQQ-QVQACFIVTPTQWQEHDWSPARVQFVLDHANAL 60 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128 + L++ GI + + F DS+E L+ +C ++ + + +N +Y +NE RRDK ++ L Sbjct: 61 SEELAKLGISLSFITATTFADSVEKLEKFCRRESIRHVHFNEEYGVNERRRDKAVKHALD 120 Query: 129 H-RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQ--NLVQADLRSLPVPAIRLT 185 V + D + P G+IL + Y V+TPF + + Q L +P P Sbjct: 121 EIGVAVNKYRDQTVAPVGNILTQQGEPYSVFTPFSRRWRSWIDEAQPTLFPIPKPVGDTV 180 Query: 186 GPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245 P + + FD P + GE A L +F + Y RD+P++ GTS L Sbjct: 181 EPPHYEGLSKSFDNPPPR---LVETGEDAAHRQLEQFLDDHAGDYKNLRDLPSVDGTSLL 237 Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305 SPYL+ GVLS +QC ++ + + G +W NE+ WR+FY +++ YP + M + Sbjct: 238 SPYLANGVLSGKQCLIAARQN--QGMGGNQEGLVTWTNEIAWRDFYINILYHYPRISMHR 295 Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365 F P TE ++WN +AWK G TG PI+DAAMRQLN GWMHNRLRMITA FL K+L Sbjct: 296 AFKPETEALKWNTPGENFEAWKAGNTGIPIVDAAMRQLNQTGWMHNRLRMITAMFLTKNL 355 Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425 +DWR+GE YFMS+L+DG LASNNGGWQW+ASTG D+ PYFR+FNP Q +RFDP G FI Sbjct: 356 FIDWRLGEAYFMSKLVDGFLASNNGGWQWSASTGTDAAPYFRVFNPATQSERFDPDGEFI 415 Query: 426 RHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478 R ++PE+ + + IH P W+ + YP P+VD K++ + ++ A K Sbjct: 416 RKYVPEIAKLDNKRIHQP--WVG-GVIPGGYPRPVVDLKESRKEAIAKFQALK 465 >gi|330502050|ref|YP_004378919.1| deoxyribodipyrimidine photo-lyase type I [Pseudomonas mendocina NK-01] gi|328916336|gb|AEB57167.1| deoxyribodipyrimidine photo-lyase type I [Pseudomonas mendocina NK-01] Length = 478 Score = 370 bits (949), Expect = e-100, Method: Compositional matrix adjust. Identities = 193/469 (41%), Positives = 270/469 (57%), Gaps = 7/469 (1%) Query: 10 HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69 L+W R+DLR+ DN AL A + IA+++ TP+QW++H + + F +L ++ Sbjct: 3 QLMWFRSDLRVQDNTALSQAMNR--GATIALYLITPDQWQRHDDAPCKVDFWLRNLRELS 60 Query: 70 KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH 129 K+L++ + QC ++ D + C + + + N +Y INE RD+ + L Sbjct: 61 KALAELNVPLLVRQCHDWGDVPVQVADVCQEHTICAVHVNEEYGINESLRDRRVSAYLSQ 120 Query: 130 RVIC-KSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188 + I S D +L PGS+L + ++VY+ FRK + L A + P + V Sbjct: 121 QAIAWHSHLDQILFKPGSVLTRSGGYFQVYSQFRKVCYERLHSALPALVTQPKAQTPMDV 180 Query: 189 TPSNIP---RFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245 IP + F P +++ ++P GEQ AL L +F E+V +Y ++RD PA GTSQL Sbjct: 181 KSDIIPDSVKGFATPSESLRLLWPAGEQAALQRLERFADEQVAFYKDERDFPAKPGTSQL 240 Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305 S YL+ G+LSPRQC + G +W+NEL+WREFY+H++ YP V + Sbjct: 241 SAYLAAGILSPRQCLHAALSANRGEFDSGNQGVITWINELLWREFYKHILVGYPRVSRHR 300 Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365 F P TE + W L AW++G TG PIIDAAMRQL GWMHNRLRMI A FL K+L Sbjct: 301 AFRPETEAVPWRNAPEELAAWQEGRTGLPIIDAAMRQLLETGWMHNRLRMIVAMFLTKNL 360 Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425 L+DWR GE +FM L+DGDLA+NNGGWQW+ASTG D+ PYFRIFNP Q ++FDP G FI Sbjct: 361 LIDWREGERFFMRHLIDGDLAANNGGWQWSASTGTDAAPYFRIFNPISQSQKFDPDGQFI 420 Query: 426 RHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQY 474 R W+PEL + + IH P S L YP PIVD ++ L + Sbjct: 421 RQWVPELAGLNKRDIHDP-SALGGLFAPSGYPRPIVDLARSRERALAAF 468 >gi|119944756|ref|YP_942436.1| deoxyribodipyrimidine photo-lyase [Psychromonas ingrahamii 37] gi|119863360|gb|ABM02837.1| Deoxyribodipyrimidine photo-lyase type I [Psychromonas ingrahamii 37] Length = 453 Score = 369 bits (947), Expect = e-100, Method: Compositional matrix adjust. Identities = 201/473 (42%), Positives = 271/473 (57%), Gaps = 23/473 (4%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 +HLVW RNDLR +DN ALY AC V ++ TP QW+ H ++ Q+ FI +L + Sbjct: 1 MHLVWFRNDLRTSDNSALYYACLK--GPVTGIYFVTPGQWKNHQLAPIQADFIEQNLKVL 58 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128 + L+ GI + ++F L + + N + EINE RD+ ++K Sbjct: 59 AEELAALGIPLLIEEVADFSHIPARLKQIQKDHHINTIHANDEPEINEKERDQAVKKAGL 118 Query: 129 HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188 V+ + +L GS+L MYKV+T FR A ++ + Q DL LP PA ++ Sbjct: 119 PLVL---YQCDCILQAGSVLTKQGGMYKVFTAFRNAWMKEVKQTDLTPLPKPADQMPSLN 175 Query: 189 TP--SNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246 NI +D + +P GE AL LR F + + Y RDIP++ GTS LS Sbjct: 176 VSWSKNISVNYD---KKSSQAWPAGETAALRRLRHFLLQDIEDYHHNRDIPSLDGTSGLS 232 Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP 306 YL GV+S ++C + F D L S FSW+NE++WREFYRHLM F P +C GK Sbjct: 233 AYLKFGVISAKRCVYEVLAAFPDALDAQDSSVFSWINEIVWREFYRHLMIFNPQLCKGKN 292 Query: 307 FIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLL 366 F + I W+ + +AW +G TG+ ++DAAMRQLN GWMHNRLRM+TASFL K LL Sbjct: 293 FNKLADNITWSNNPDDFKAWCEGRTGYGLVDAAMRQLNQTGWMHNRLRMVTASFLTKHLL 352 Query: 367 VDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIR 426 +DWR GE YF L+DGDLASNNGGWQWAASTG D+ PYFRIFNP IQ ++FDP+G FIR Sbjct: 353 IDWRWGEAYFREHLIDGDLASNNGGWQWAASTGCDAQPYFRIFNPIIQSQKFDPKGLFIR 412 Query: 427 HWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479 ++ ELN + IH P + IV+HK+A + L++Y KK Sbjct: 413 KYVKELNGFDNKKIHFPVN-------------AIVEHKQARLNALDRYSVLKK 452 >gi|24374895|ref|NP_718938.1| deoxyribodipyrimidine photolyase [Shewanella oneidensis MR-1] gi|24349596|gb|AAN56382.1|AE015774_17 deoxyribodipyrimidine photolyase [Shewanella oneidensis MR-1] Length = 512 Score = 369 bits (946), Expect = e-100, Method: Compositional matrix adjust. Identities = 205/504 (40%), Positives = 284/504 (56%), Gaps = 40/504 (7%) Query: 11 LVWLRNDLRITDNKALYAAC----HNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 L+W R DLR+TDN+A AAC + AK+ A++IATP QW QH I+ Q FI + Sbjct: 13 LMWFRQDLRLTDNQAFTAACDWVRQHHAAKLKAIYIATPSQWHQHDIAPIQLDFIQRHVN 72 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 + + L G+ F+ Q +F D +L SYC + + ++F ++ EINE +RD+ Sbjct: 73 LLAQGLVSLGVEFELIQLDSFRDIPAFLTSYCEEHSIGRVFAGQEPEINEQKRDQAC--- 129 Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 ++ + D+ LLPPG++LN + MY+V+TPF + + + + L VPA G Sbjct: 130 VEAGIPLSLSDEHCLLPPGTVLNLSGDMYRVFTPFSRKWREVAAKQAILPLGVPAP--LG 187 Query: 187 PVTPSNIPRFF-------------------DYPFQAIDPM-----FPIGEQNALHILRKF 222 + P FF + A +P+ + GE A +L +F Sbjct: 188 SILSEPKPLFFKNIGSTYLAASKDIASSKKGFNQTAPNPLISSEQWAAGEGQAKRLLNQF 247 Query: 223 CKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWL 282 ++KV Y + RD PAI GTS +SPYL+IGVLSPRQC L + F ++++ S +WL Sbjct: 248 IQQKVQDYKQDRDFPAIDGTSVISPYLAIGVLSPRQCVAALLQRFPEVIVDDTSPGRTWL 307 Query: 283 NELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQ 342 NELIWREFYRHL+ +P + G F + + W + AW +G TG+PI+DAAMRQ Sbjct: 308 NELIWREFYRHLLVAFPDLSKGNNFNRQADHVLWRNNQSEFLAWCEGKTGYPIVDAAMRQ 367 Query: 343 LNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDS 402 LN GWMHNRLRM+ ASFL K LL+DWR GE YF L+DGDLA+NNGGWQW+A G D+ Sbjct: 368 LNQTGWMHNRLRMVVASFLTKHLLIDWRWGERYFRQHLIDGDLAANNGGWQWSAGCGCDA 427 Query: 403 VPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPH-----SWLDKNDLS--LN 455 PYFRIFNP Q ++FDP G FIR +LPEL + +H P+ S + + + Sbjct: 428 QPYFRIFNPMSQSEKFDPDGRFIRKYLPELASWGVTRLHQPNQQKMPSLFEAPLFASQAD 487 Query: 456 YPLPIVDHKKACHHTLNQYYAAKK 479 YP IV+H A L KK Sbjct: 488 YPNAIVEHNAARARALTVLGVLKK 511 >gi|290510440|ref|ZP_06549810.1| deoxyribodipyrimidine photo-lyase [Klebsiella sp. 1_1_55] gi|289777156|gb|EFD85154.1| deoxyribodipyrimidine photo-lyase [Klebsiella sp. 1_1_55] Length = 295 Score = 369 bits (946), Expect = e-100, Method: Compositional matrix adjust. Identities = 172/280 (61%), Positives = 208/280 (74%), Gaps = 4/280 (1%) Query: 200 PFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQC 259 PF + +F E+ AL LR FC++ Y QRD PA++GTS+LSP L+ GVLSPRQC Sbjct: 10 PFDGL--LFAADEKTALARLRAFCQQPAAEYEGQRDFPAVEGTSRLSPCLATGVLSPRQC 67 Query: 260 WNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKD 319 +RL E L +GA +WLNELIWREFYRHLM +YP +C G+PFI WT+K+ W +D Sbjct: 68 LHRLLTEHPAAL-DGGAGA-TWLNELIWREFYRHLMVYYPKLCKGRPFIAWTDKVAWRED 125 Query: 320 SHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQ 379 LQAW++G TGFPI+DAAMRQLN GWMHNRLRMI ASFL KDL +DWR GE YFMSQ Sbjct: 126 DAALQAWQRGETGFPIVDAAMRQLNATGWMHNRLRMIVASFLTKDLRLDWRAGERYFMSQ 185 Query: 380 LLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQY 439 L+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG++FD QG F+R WLPEL VP + Sbjct: 186 LIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGEKFDKQGVFMRRWLPELAKVPEKA 245 Query: 440 IHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479 +H P +W DK + L+YP PIVDHK+A TL + AA+K Sbjct: 246 LHQPWAWADKQGIKLDYPRPIVDHKQARQETLAAWEAARK 285 >gi|59713936|ref|YP_206711.1| deoxyribodipyrimidine photolyase Phr, FAD-binding [Vibrio fischeri ES114] gi|59482184|gb|AAW87823.1| deoxyribodipyrimidine photolyase Phr, FAD-binding [Vibrio fischeri ES114] Length = 479 Score = 368 bits (945), Expect = e-100, Method: Compositional matrix adjust. Identities = 212/483 (43%), Positives = 280/483 (57%), Gaps = 25/483 (5%) Query: 8 SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67 ++ VW R+DLR DN AL AA N A+FI + QW++H + Q I L++ Sbjct: 6 NLQCVWFRHDLRTIDNPALQAAVDNQQP-TFALFIYSESQWKKHNKAPIQIDLIKRRLVE 64 Query: 68 VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127 ++ L Q I F + + + + V LF N++YE +E RD + + L Sbjct: 65 LKNELEQLNIPLIVISSPLFSEIPAKITALFNELSVNALFANKEYEHDERLRDTQVYESL 124 Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187 + C FD +LP G+I+N Q YKV+TPF+KA + Q P I TG Sbjct: 125 LN-TNCYFFDAKCILPVGTIINRTQQPYKVFTPFKKAWKASFYQQQ------PHITKTGK 177 Query: 188 ---VTPSNIPRF-------FDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIP 237 P I + F + +P+ + + ILR+FC++KV Y RD P Sbjct: 178 SVLCDPKLIKKLSLNNDDSFVFSSSNESGSWPVSTKAIIDILRQFCRQKVSQYHNNRDYP 237 Query: 238 AIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAF 297 IQGTSQLSPYL+IG +S +QC RL E L G WL+ELIWREFY HL+ F Sbjct: 238 EIQGTSQLSPYLAIGAISAKQCALRLHLEANYEL---NQGEDIWLDELIWREFYTHLLHF 294 Query: 298 YPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMIT 357 YP++ + F+ + + IEW+ + + W +G TGFPI+DAAM+QLNT GWMHNRLRMIT Sbjct: 295 YPNLSKNQAFLSYDKYIEWDNNLDHFERWCKGETGFPIVDAAMKQLNTTGWMHNRLRMIT 354 Query: 358 ASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKR 417 ASFLVKDL +DWR GE+YFMS+L+DGD ASNNGGWQW AS G DS PYFRIFNP QGK+ Sbjct: 355 ASFLVKDLHIDWRWGEQYFMSKLIDGDFASNNGGWQWCASVGCDSSPYFRIFNPITQGKK 414 Query: 418 FDPQGTFIRHWLPELNNVPTQYIHAPH-SWLDKNDLSLNYPLPIVDHKKACHHTLNQYYA 476 FD TFI+HWLPEL + + IH P+ + L K+D NYP IVDH + + Y Sbjct: 415 FDADCTFIKHWLPELKALSNKEIHHPNPAPLLKSD---NYPDQIVDHAQQRIKVIEVYKQ 471 Query: 477 AKK 479 AK+ Sbjct: 472 AKQ 474 >gi|152989300|ref|YP_001350641.1| deoxyribodipyrimidine photolyase [Pseudomonas aeruginosa PA7] gi|150964458|gb|ABR86483.1| deoxyribodipyrimidine photolyase [Pseudomonas aeruginosa PA7] Length = 477 Score = 368 bits (944), Expect = 2e-99, Method: Compositional matrix adjust. Identities = 196/480 (40%), Positives = 277/480 (57%), Gaps = 27/480 (5%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 ++LVW R DLR +DN AL AA +A+++ +P QWR+H + + F +L ++ Sbjct: 1 MNLVWFRCDLRTSDNSALLAAADGR--PCVALYLLSPAQWREHDDAPCKVDFWLRNLSEL 58 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128 Q+ L+ I C ++ + L C + + + N++Y NE RRD+ + + L+ Sbjct: 59 QRQLAALNIPLLVRDCEHWRQAPTVLGRLCSELGIGAVHVNQEYGANEQRRDQAVARHLR 118 Query: 129 HRVIC-KSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIR---- 183 + + D + PGS+L ++V++ FR+ + L QA +PA++ Sbjct: 119 EQGVAFHEHLDQLFFAPGSVLTRGGGYFQVFSQFRRVCHERLYQA------LPAVQPRPQ 172 Query: 184 -------LTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDI 236 L G P +P F P + ++P GE A LR F ++ + Y EQRD Sbjct: 173 PQPPHRLLPGDPLPDAVP-GFAAPGAGLRALWPAGETAAQQRLRDFAEQHLDDYHEQRDF 231 Query: 237 PAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMA 296 PA+ GTSQLSPYL+ GVLSPRQC + + GA +W+NEL+WREFY+H++ Sbjct: 232 PALPGTSQLSPYLAAGVLSPRQCLDAALVANRGEFSGGRQGAATWINELLWREFYKHILV 291 Query: 297 FYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMI 356 YP V +PF TE + W + L+AW+QG TG PIIDAAMRQL GWMHNRLRM+ Sbjct: 292 GYPRVSRHRPFREETEALRWRQAPAELEAWQQGRTGIPIIDAAMRQLLATGWMHNRLRMV 351 Query: 357 TASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGK 416 A FL K+LL+DWR GE +FM L+DGDLA+NNGGWQW+ASTG D+VPYFR+FNP Q K Sbjct: 352 VAMFLSKNLLIDWREGERWFMRHLIDGDLAANNGGWQWSASTGTDAVPYFRLFNPLSQSK 411 Query: 417 RFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDL--SLNYPLPIVDHKKACHHTLNQY 474 RFDP+G FIRHWLPEL + + IH P + L ++YP +VD K + L + Sbjct: 412 RFDPRGEFIRHWLPELAGLERKAIHDP----SRLGLFAGVDYPQSMVDLKASRERALAAF 467 >gi|226946177|ref|YP_002801250.1| Deoxyribodipyrimidine photolyase [Azotobacter vinelandii DJ] gi|226721104|gb|ACO80275.1| Deoxyribodipyrimidine photolyase [Azotobacter vinelandii DJ] Length = 468 Score = 366 bits (940), Expect = 3e-99, Method: Compositional matrix adjust. Identities = 194/478 (40%), Positives = 284/478 (59%), Gaps = 18/478 (3%) Query: 10 HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69 L+WLR+DLR+ DN+AL AA +A+++ +P QWR H + + F +L ++ Sbjct: 3 QLIWLRSDLRVRDNRALGAAM--GAGPTLALYLLSPAQWRTHDDAPCKVDFRLRNLAELS 60 Query: 70 KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH 129 L+ G+ + +D++ L C +Q + ++ N +Y ++E RRD +E+ LQ Sbjct: 61 HGLASLGVPLLIRRVDTWDEAPALLTRLCHEQNIVRVHVNDEYGVHESRRDAAVERALQA 120 Query: 130 R-VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQA--DLRSLPV--PAIRL 184 + V + D +LL P S+ + ++++ FR+A L + + LP+ P + + Sbjct: 121 QGVGLQRHLDQLLLAPDSLRTRSGGSFRLFAQFRRACHWRLAVSLPAVGGLPMAQPPLNV 180 Query: 185 TGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244 G P+ + F P +++ ++P GE A L +F + ++ Y E RD PA GTS+ Sbjct: 181 VGNAVPAAL-EGFATPPESLRRLWPAGEIAAQRRLHEFVENRLAAYAEARDFPAEPGTSR 239 Query: 245 LSPYLSIGVLSPRQCWNR-LKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCM 303 LSPYL+ GVLSPRQC + L+ D +P++ A W +EL+WREFY+H++A +P V M Sbjct: 240 LSPYLAAGVLSPRQCLHAVLRTGGFD---RPEASA--WFDELLWREFYKHILAGHPRVSM 294 Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363 G+ TE + W L AW+QG TGFP+IDAAMRQL GWMHNRLRM+ A FL K Sbjct: 295 GRALRTETEALPWRDAPQELAAWQQGRTGFPLIDAAMRQLLATGWMHNRLRMVVAMFLSK 354 Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423 +LL+DWR GE +FM L+DGDLA+NNGGWQW ASTG D+VPYFR+FNP Q +RFDP+G Sbjct: 355 NLLIDWRHGERWFMHHLIDGDLAANNGGWQWCASTGTDAVPYFRLFNPLAQSRRFDPEGR 414 Query: 424 FIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481 FIR WLPEL ++ + IHAP L YP PIVD + L + A +++ Sbjct: 415 FIRQWLPELASLDNRDIHAPAGALRPA----GYPPPIVDLPSSRERALAAFKALRRRG 468 >gi|187478325|ref|YP_786349.1| deoxyribodipyrimidine photo-lyase [Bordetella avium 197N] gi|115422911|emb|CAJ49439.1| deoxyribodipyrimidine photo-lyase [Bordetella avium 197N] Length = 485 Score = 366 bits (940), Expect = 4e-99, Method: Compositional matrix adjust. Identities = 195/462 (42%), Positives = 271/462 (58%), Gaps = 16/462 (3%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 LVWLR+DLR+ DN AL AA A+F A P QW+ HG +A + F +L+ + + Sbjct: 15 LVWLRSDLRLHDNPALAAAAAQGHTH--ALFFAAPGQWQSHGDAAIKIDFWRRNLVALHQ 72 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130 +L++ G ++ ++ + L +C Q R+ + N ++ INE RRD +RLQ Sbjct: 73 ALAELGFDLSVITLQDWSEAPQALAQFCRQHRIESVHVNAEWGINERRRDGACAQRLQAE 132 Query: 131 VIC-KSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189 I + LLPPGS+ N Y+V+TP+ +A + L R P +R Sbjct: 133 GIAFEVHQGGTLLPPGSVRNGKGDPYRVFTPYARACREKL-----RVAPPAPVRAPKAQG 187 Query: 190 PSNIPRFFDYPFQAIDP-----MFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244 P+ P FD+P A P ++P GE A LR F + + Y E+RD+PA+ GTS Sbjct: 188 PAFAPAEFDWPPSAEFPAQAATLWPAGETAAHERLRAFLDDGLMRYHERRDLPAVPGTSA 247 Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304 LSPYL+ GVLSP QC + ++G W+ E++WREFY+HL+A YP++ M Sbjct: 248 LSPYLACGVLSPAQCLRAALRANQGEIDSGQTGPRVWITEILWREFYQHLLAAYPALSMH 307 Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364 +P P T + W AW+ G TG PI+DAA RQL GWMHNRLRMI+A FL K+ Sbjct: 308 QPMRPETAYLAWRDAPQDAAAWRAGRTGIPIVDAAQRQLLATGWMHNRLRMISAMFLSKN 367 Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424 LL+DWR+GE +FM+ L+DG+LA+NNGGWQW+ASTG D+VPYFR+FNP Q ++FDP G F Sbjct: 368 LLIDWRLGEAWFMAHLIDGELAANNGGWQWSASTGADAVPYFRVFNPITQSQKFDPDGVF 427 Query: 425 IRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKA 466 +R WLPEL N+ ++ IH P D + YP IVD K + Sbjct: 428 LRRWLPELANLDSKSIHEPS---DAQRRASAYPKAIVDLKSS 466 >gi|83644572|ref|YP_433007.1| deoxyribodipyrimidine photolyase [Hahella chejuensis KCTC 2396] gi|83632615|gb|ABC28582.1| Deoxyribodipyrimidine photolyase [Hahella chejuensis KCTC 2396] Length = 481 Score = 366 bits (939), Expect = 5e-99, Method: Compositional matrix adjust. Identities = 199/480 (41%), Positives = 275/480 (57%), Gaps = 10/480 (2%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNS---DAKVIAVFIATPEQWRQHGISARQSHFIYA 63 M L W RNDLR DN ALYAA + ++++IA F+ +PEQWR H ++ + F+ Sbjct: 1 MPRTLHWFRNDLRTRDNPALYAAAQRAREQNSELIACFLVSPEQWRSHDMADIKLDFMLR 60 Query: 64 SLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLL 123 +L +Q L++ I FD++ L + Q + + L +N ++ +NE RRDK + Sbjct: 61 NLKALQAELAKLNIPLFILDAPRFDEAPTKLLTLMQQHQCSALTFNEEFGVNERRRDKAV 120 Query: 124 EKRLQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAI 182 ++ L + F D +LP GSI Y V+TP+++A + + P PA Sbjct: 121 KETLNAEGLEALKFRDQSILPAGSIRTGQGTPYAVFTPYKRAWFSQCPE-HIELWPEPAK 179 Query: 183 RLTGPVTP-SNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQG 241 + + TP ++P + + GE AL L F + KV Y EQRD PAI G Sbjct: 180 QPSPMQTPEGDVPESVSGFDKVSSQTYAAGEDAALQKLDDFLEHKVDRYHEQRDFPAIDG 239 Query: 242 TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSV 301 SQLSPYL++GVLS RQC++ + G +W+NELIWR+FY H++ +P + Sbjct: 240 VSQLSPYLALGVLSGRQCFH-AAQRHRHASPNASEGVDTWINELIWRDFYIHILYDFPRI 298 Query: 302 CMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFL 361 M K F TE ++W AW +G TG PI+DAAMRQLN GWMHNRLRMI A FL Sbjct: 299 SMTKAFKQETENLQWRHSEKDFLAWCEGKTGIPIVDAAMRQLNQTGWMHNRLRMICAMFL 358 Query: 362 VKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQ 421 K+LL+DWR+GE YFM +L+DG LA+NNGGWQW+ASTG D+ PYFR+FNP Q +RFDP Sbjct: 359 SKNLLLDWRLGERYFMCKLIDGHLAANNGGWQWSASTGVDAAPYFRMFNPVAQSERFDPN 418 Query: 422 GTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481 G FIRH+ PEL + + IH P S + L YP+PIVD K + L + K + Sbjct: 419 GDFIRHYAPELAELSAKLIHQPPSDVRSR---LGYPVPIVDLKASRERALQAFRELKNST 475 >gi|167031795|ref|YP_001667026.1| deoxyribodipyrimidine photo-lyase [Pseudomonas putida GB-1] gi|166858283|gb|ABY96690.1| Deoxyribodipyrimidine photo-lyase [Pseudomonas putida GB-1] Length = 475 Score = 365 bits (937), Expect = 8e-99, Method: Compositional matrix adjust. Identities = 201/463 (43%), Positives = 275/463 (59%), Gaps = 19/463 (4%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 +HL WLR+DLRI DN AL AA IA+++ +P QW+ H +A + F +L + Sbjct: 1 MHLTWLRSDLRIDDNTALSAATER--GPTIALWLVSPGQWQAHDDAACKVDFWLRNLRAL 58 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128 ++SL I + +D + + + C Q +V + +N +Y INE +RD L+ Sbjct: 59 RQSLEGLNIPLLIRKIDTWDQAPQAVLDVCRQHQVQSVHWNEEYGINEQQRDDATRALLE 118 Query: 129 HRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT-- 185 I S D +L PG+IL + ++V++ F+K +++L RSLP A R+ Sbjct: 119 KSSIQACSHLDQLLFRPGTILTRSGDYFQVFSQFKKTCLEHLH----RSLPALARRVERQ 174 Query: 186 GP--VTPSNIPRF---FDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ 240 P + IP+ F+ P +A+ +P GE A L +F E + Y + RD+PA Sbjct: 175 APLQIQSDPIPQHVDGFETPTRALREHWPAGEAEAQARLSRFLDETIDEYQQLRDLPAKH 234 Query: 241 GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPS 300 GTSQLS YL+ GV+SPRQC + +G +W+NEL+WREFY+H++ YP Sbjct: 235 GTSQLSTYLAAGVISPRQCLHGALASNRGEFDSGSTGVQTWINELLWREFYKHILNGYPQ 294 Query: 301 VCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASF 360 V + F TE + W L+AWKQG TGFPIIDAAMRQL GWMHNRLRM+ A F Sbjct: 295 VSRHRAFRAHTEALPWRDAPADLEAWKQGRTGFPIIDAAMRQLLHTGWMHNRLRMVVAMF 354 Query: 361 LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDP 420 L K+LL+DWR GE +FM L+DGDLA+NNGGWQW+ASTG D+VPYFRIFNP Q +RFDP Sbjct: 355 LSKNLLIDWRKGERHFMRHLIDGDLAANNGGWQWSASTGTDAVPYFRIFNPVSQSQRFDP 414 Query: 421 QGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLN--YPLPIV 461 QG FIRHWLPEL ++ + IH P + +DL N Y P+V Sbjct: 415 QGRFIRHWLPELRDMDEKTIHEP---MKSDDLFANNSYHRPMV 454 >gi|77460957|ref|YP_350464.1| deoxyribodipyrimidine photo-lyase type I [Pseudomonas fluorescens Pf0-1] gi|77384960|gb|ABA76473.1| deoxyribodipyrimidine photo-lyase type I [Pseudomonas fluorescens Pf0-1] Length = 488 Score = 365 bits (937), Expect = 1e-98, Method: Compositional matrix adjust. Identities = 195/475 (41%), Positives = 273/475 (57%), Gaps = 9/475 (1%) Query: 5 TAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYAS 64 T + L+WLR+DLR DN AL AA + +AV++ +P+QW++H + + F + Sbjct: 4 TETDMQLIWLRSDLRQHDNTALAAAAERGPS--VAVYLLSPQQWQEHDDAPCKIDFWLRN 61 Query: 65 LLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLE 124 L ++ KSL I ++D + L C Q ++ + N +Y INE RRD + Sbjct: 62 LHKLSKSLGDLNIPLLIRTAPHWDQAPAVLLELCRQLKIEAVHVNEEYGINESRRDAAVA 121 Query: 125 KRLQHRVIC-KSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQA--DLRSLPV-- 179 K LQ I S+ D +L PGS+L ++V++ FRK ++L ++ L+ P Sbjct: 122 KALQAEGITFHSYLDQLLFKPGSVLTRTGTYFQVFSQFRKVCYEHLHRSMPSLKQAPGKQ 181 Query: 180 PAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAI 239 A+ + P I F P ++ ++P GE A L F ++ YY +RD PA Sbjct: 182 SALNIASDPVPEAI-EGFPTPGASLRALWPAGETEARRRLDTFADAQIDYYKSERDFPAK 240 Query: 240 QGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYP 299 GTSQLS YL+ GV+SPRQC + + K GA +W+NEL+WREFY+H++ YP Sbjct: 241 PGTSQLSAYLAAGVISPRQCLHAALQSNQGEFESGKVGAVTWINELLWREFYKHILVGYP 300 Query: 300 SVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITAS 359 V + F P TE + W L AW++ TG PIIDAAMRQL GWMHNRLRM+ A Sbjct: 301 RVSRHRAFRPETEDLAWRNAPEDLAAWQEARTGLPIIDAAMRQLLETGWMHNRLRMVVAM 360 Query: 360 FLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFD 419 FL K+LL+DWR GE +FM L+DGDLA+NNGGWQW+ASTG DS PYFRIFNP Q ++FD Sbjct: 361 FLTKNLLIDWREGERFFMRHLIDGDLAANNGGWQWSASTGTDSAPYFRIFNPVSQSEKFD 420 Query: 420 PQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQY 474 +G FI+HWLPEL + + IH P S ++ +YP PIV+ + L + Sbjct: 421 SEGLFIKHWLPELAGLNKKEIHNPASVGGLFGVA-DYPAPIVNLSASRERALAAF 474 >gi|317052654|ref|YP_004113770.1| deoxyribodipyrimidine photo-lyase [Desulfurispirillum indicum S5] gi|316947738|gb|ADU67214.1| Deoxyribodipyrimidine photo-lyase [Desulfurispirillum indicum S5] Length = 469 Score = 365 bits (937), Expect = 1e-98, Method: Compositional matrix adjust. Identities = 199/474 (41%), Positives = 277/474 (58%), Gaps = 20/474 (4%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 ++LVWLRNDLRI+D +AL AA V+AVF QW++H ++A + F+ +L + Sbjct: 1 MNLVWLRNDLRISDQRALGAA-AAEGGSVLAVFCLCQRQWQRHHMAAVRRDFLLRNLECL 59 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128 + L GI C +F E L +LF+N +Y I+E RRD +E+ + Sbjct: 60 RLQLQAVGIPLFVLDCHDFAAVPEALLKLARTTGARRLFFNEEYAIDEWRRDMAVERCFR 119 Query: 129 HRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL--- 184 + + D V++P G + + + Y+V+TPF+KA ++ +V+ P P + Sbjct: 120 ENGMEVRRCCDHVVVPAGQLRSGRGECYRVFTPFQKAWLKLVVENPALLAPAPIVNTQPH 179 Query: 185 ----TGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ 240 G P++IP + ++P GE A L+ F + Y RD PAI+ Sbjct: 180 PFPGDGAALPTDIP-------HPLAHLWPAGEAEAQRRLQAFLDGPIRRYHLDRDFPAIE 232 Query: 241 GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPS 300 GTS LSPYL+ GVLS RQC ++L GA WL+ELIWREF++H++ +P Sbjct: 233 GTSALSPYLACGVLSIRQC----VSAALELANGGSEGARVWLSELIWREFFQHILRAFPR 288 Query: 301 VCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASF 360 V + F TE + W D AW +G TG+PI+DAAM QL++ GWMHNRLRMI A F Sbjct: 289 VSTNRAFQEHTETVAWRYDEGEFAAWCEGRTGYPIVDAAMAQLHSTGWMHNRLRMICAMF 348 Query: 361 LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDP 420 L KDLL+DWR GE YFM L+DGDLA+NNGGWQWAASTG D+VPYFR+F+PT Q KRFDP Sbjct: 349 LTKDLLIDWRWGERYFMEHLVDGDLAANNGGWQWAASTGTDAVPYFRVFHPTTQSKRFDP 408 Query: 421 QGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQY 474 G FIRH+LP+L + +YIH PH +++YP P+VDHK A ++ + Sbjct: 409 HGQFIRHFLPQLAELDEKYIHEPHDSSGLLRPNIDYPRPMVDHKVARQRAIDAF 462 >gi|192360182|ref|YP_001982413.1| deoxyribodipyrimidine photolyase [Cellvibrio japonicus Ueda107] gi|190686347|gb|ACE84025.1| deoxyribodipyrimidine photolyase [Cellvibrio japonicus Ueda107] Length = 476 Score = 364 bits (935), Expect = 1e-98, Method: Compositional matrix adjust. Identities = 195/473 (41%), Positives = 280/473 (59%), Gaps = 22/473 (4%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 LVW RNDLR+ DN ALY A V+AV++ + I+ + FI LL + + Sbjct: 4 LVWFRNDLRVRDNPALYKAAEEKQG-VLAVYVHCEAYVGRFPIAPARLDFIRRHLLVLVR 62 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130 L+Q I + + + L + Q + K F+N +Y ++E+ RD + + L+ + Sbjct: 63 ELAQLNIPLRLIAVNRAEQIAPALAALVTQYNIDKCFFNAEYPLDELARDHQVNQLLRAQ 122 Query: 131 -VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL----T 185 V+ K D V++PPG I + YKV+T F++ +Q ++ L+ L +P + Sbjct: 123 GVLVKRCHDRVIVPPGMIRTGNGEPYKVFTAFKRKWLQTVMPLHLQPLGLPDKQAQPMPV 182 Query: 186 GPVTPSNIPRFF-DYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244 PVT ++I R F ++ + ++ ++P GE A L F + + +Y ++RD PA+QGTS Sbjct: 183 KPVTQADINRLFGEHSVRDLEHLWPAGEDEACARLDSFIESGLTHYQDKRDFPALQGTST 242 Query: 245 LSPYLSIGVLSPRQ------CWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFY 298 LSPYL+IG LSPRQ C+ + E +GA W++ELIWREFY+H++ + Sbjct: 243 LSPYLAIGSLSPRQAISSVLCYTQGDWE-------SNAGASCWISELIWREFYQHVVVDF 295 Query: 299 PSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITA 358 P VC + TE W KD W QG TG P++DAAMRQL GWMHNRLRM+ A Sbjct: 296 PQVCKHRAMQVHTEAFPWKKDKKQFSRWCQGNTGIPLVDAAMRQLVMTGWMHNRLRMVVA 355 Query: 359 SFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRF 418 FL K+L +DWR+GE +FM L+DGD A+NNGGWQW+ASTG D+ PYFR+FNP Q +RF Sbjct: 356 MFLTKNLQIDWRLGERFFMEHLIDGDFAANNGGWQWSASTGTDAAPYFRVFNPISQSERF 415 Query: 419 DPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTL 471 DPQG FIR W+PEL +VP +YIH P + DK+ SL YP P+VD ++ T+ Sbjct: 416 DPQGDFIRSWIPELADVPLKYIHNPSA--DKSFSSLQYPAPMVDLAESRKSTI 466 >gi|56460496|ref|YP_155777.1| deoxyribodipyrimidine photolyase [Idiomarina loihiensis L2TR] gi|56179506|gb|AAV82228.1| Deoxyribodipyrimidine photolyase [Idiomarina loihiensis L2TR] Length = 468 Score = 364 bits (935), Expect = 2e-98, Method: Compositional matrix adjust. Identities = 198/469 (42%), Positives = 270/469 (57%), Gaps = 9/469 (1%) Query: 12 VWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQKS 71 +W R+DLRI DN A+++ACH D +A+F E W+ H + + FI+ +L +Q+ Sbjct: 5 IWFRSDLRILDNPAVFSACHG-DEPPLAIFFVCHETWKSHDWAPIKVDFIWRNLECLQQD 63 Query: 72 LSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHRV 131 L++KGI Q F L S+C + ++ ++ N +Y ++E RRD L + Sbjct: 64 LAEKGIELQVQLVPKFSQVPGALRSFCRENKIARVHINAEYALDEKRRDAATNAVLSNDD 123 Query: 132 I-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTP 190 I S ++L+ PG + YK +TPF + Q L + S P+ I+ VT Sbjct: 124 IELVSHHGNLLVSPGEVRTQQGDYYKKFTPFNRRWRQVLSEKTY-SEPL-QIKSYSRVTA 181 Query: 191 SNIPRFFDYPFQAIDPM-FPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYL 249 +P + P D + GEQ L L +F V Y + RD+PA GTSQLS YL Sbjct: 182 KGLP---ECPLGRKDSSDWSAGEQQVLGKLGQFVGHSVDDYQQARDLPAENGTSQLSAYL 238 Query: 250 SIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIP 309 + GV+ P+ L + + SGA +WL EL WREFY+HLM F P + G+ F Sbjct: 239 AQGVIGPQTAVRALHKFSPEFPFGLASGADTWLTELAWREFYQHLMYFVPRLSKGESFQS 298 Query: 310 WTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDW 369 T+ I+W +D Q W G TG+PI+DA MRQL + GWMHNRLRMITA+FLVKDLLVDW Sbjct: 299 ETDSIQWLEDDDAFQRWCDGRTGYPIVDAGMRQLTSTGWMHNRLRMITANFLVKDLLVDW 358 Query: 370 RIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWL 429 R GE +FM L+DG +NNGGWQW+AS G D+VPYFR+FNP Q ++FDP G +IR W+ Sbjct: 359 RKGEAFFMQHLIDGSFPANNGGWQWSASVGTDAVPYFRVFNPVKQSEKFDPDGQYIRKWV 418 Query: 430 PELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478 EL VPT+YIH PHSWL + S NY P+V+HK A L + K Sbjct: 419 EELKEVPTKYIHWPHSWLQQQS-SNNYCDPMVEHKFARERFLTTFKQVK 466 >gi|229588295|ref|YP_002870414.1| deoxyribodipyrimidine photo-lyase [Pseudomonas fluorescens SBW25] gi|229360161|emb|CAY47018.1| deoxyribodipyrimidine photo-lyase [Pseudomonas fluorescens SBW25] Length = 481 Score = 364 bits (935), Expect = 2e-98, Method: Compositional matrix adjust. Identities = 191/471 (40%), Positives = 269/471 (57%), Gaps = 9/471 (1%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 +HL+WLR DLR+ DN AL AA + AV++ TPEQW H + + F +L + Sbjct: 1 MHLIWLRTDLRLHDNTALAAASQR--GPIAAVYLITPEQWLAHDDAPCKVDFWLRNLHAL 58 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128 +L + I + +D + L C + V + N +Y I+E RRD + K L+ Sbjct: 59 SATLGELNIPLLIRTAATWDQAPRVLSQLCQELSVESVHVNEEYGIHESRRDAAVSKALE 118 Query: 129 HRVIC-KSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVP----AIR 183 + + S+ D + PGS+L ++V++ FRK L A R + P A+ Sbjct: 119 AQGVSFHSYLDQLFFQPGSVLTKTGTYFQVFSQFRKVCYSRLHSALPRIVAAPKAQAALT 178 Query: 184 LTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS 243 L P+ + F+ P QA+ ++P GE A L F +++ YY ++RD PA GTS Sbjct: 179 LKSDPIPTTV-EGFEPPSQALRALWPAGEDEARRRLDAFADQQISYYKDERDFPAKPGTS 237 Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCM 303 QLS YL+ GV+SPRQC + + GA +W+NEL+WREFY+H++ YP V Sbjct: 238 QLSAYLAAGVVSPRQCLHAALQTNGGEFESGDMGAITWINELLWREFYKHILVGYPRVSR 297 Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363 + F P TE + W L AW++ TG PIIDAAMRQL GWMHNRLRM+ A FL K Sbjct: 298 HRAFRPETEAVAWRNAPKDLAAWQEARTGLPIIDAAMRQLLETGWMHNRLRMVVAMFLTK 357 Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423 +LL+DWR GE +FM L+DGDLA+NNGGWQW++STG DS PYFRIF+P Q ++FD G Sbjct: 358 NLLIDWREGERFFMRHLIDGDLAANNGGWQWSSSTGTDSAPYFRIFSPLSQSEKFDSDGV 417 Query: 424 FIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQY 474 FI+HWLPEL + + +H P + ++ +YP IVD KK+ L + Sbjct: 418 FIKHWLPELAALNKKDVHNPDAAGGLFGVA-DYPRSIVDLKKSRERALAAF 467 >gi|307543860|ref|YP_003896339.1| deoxyribodipyrimidine photolyase [Halomonas elongata DSM 2581] gi|307215884|emb|CBV41154.1| deoxyribodipyrimidine photolyase [Halomonas elongata DSM 2581] Length = 502 Score = 363 bits (932), Expect = 3e-98, Method: Compositional matrix adjust. Identities = 188/470 (40%), Positives = 267/470 (56%), Gaps = 7/470 (1%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M L+W R+DLR+ DN AL AA S+ V+AVF+ + QW +HG A + F + +L Sbjct: 1 MPPSLIWFRSDLRVHDNTALAAAA--SEGPVVAVFLRSTAQWLEHGHGANKLDFWHRGVL 58 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 ++ +L GI + +F + + L + + +L +N +Y +NE RRD + Sbjct: 59 ALRAALHGLGIPLLHRDIDDFAAAPDALLALARETGARRLHFNHEYPLNERRRDASVVDA 118 Query: 127 LQHRVICK-SFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185 + + D V PG + Y ++TPF KA + + L +PAI+ + Sbjct: 119 FEAAGLSAVGHHDGVAFAPGELRTGKGDFYGIFTPFAKAWHRQVTPERLALRDLPAIQAS 178 Query: 186 GPVTPSNIPRFFDYPFQAIDPM-FPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244 PV P P +P GE A L +F + + +Y E+RD PA GTS Sbjct: 179 LPVASDPEPELPALDTAPAAPENWPAGENAAADRLERFLRWRARHYAERRDFPAESGTSS 238 Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304 LSPYL++G++S RQC E L + +G +W+NELIWREFY+H++ +P VC Sbjct: 239 LSPYLALGMISHRQCLQAALAENDGGLAEGDAGLTAWVNELIWREFYQHVVVGFPEVCRH 298 Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364 + F TE + W D+ +AW +G TG+P++DAAMRQL GWMHNRLRM+TA FL K Sbjct: 299 RAFQAHTEALPWRDDTSAWRAWTEGRTGYPLVDAAMRQLRATGWMHNRLRMVTAMFLAKH 358 Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424 LL+DWR GE +F+ L+DG+ A+NNGGWQWAASTG D+VPYFRIFNP Q +RFDP G F Sbjct: 359 LLIDWRHGERFFLHHLVDGEFAANNGGWQWAASTGTDAVPYFRIFNPITQSRRFDPDGRF 418 Query: 425 IRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQY 474 I WLPEL ++P + H P + + YP+PIV+H+ A L + Sbjct: 419 IAEWLPELADLPAKERHDPSP---EQRAARRYPMPIVEHRAARARALEAF 465 >gi|88857379|ref|ZP_01132022.1| putative deoxyribodipyrimidine photolyase [Pseudoalteromonas tunicata D2] gi|88820576|gb|EAR30388.1| putative deoxyribodipyrimidine photolyase [Pseudoalteromonas tunicata D2] Length = 475 Score = 363 bits (931), Expect = 4e-98, Method: Compositional matrix adjust. Identities = 187/458 (40%), Positives = 275/458 (60%), Gaps = 6/458 (1%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 ++L+WLR DLRI DN AL AA + + A+FIATPEQW+QH ++ Q FI L + Sbjct: 1 MNLMWLRRDLRIDDNPALIAALQSGPTQ--ALFIATPEQWQQHDMAPIQVDFIERHLNLL 58 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128 + L++ GI N+ L +C Q+++++F N++ E+NE RD+ + L Sbjct: 59 AEQLAKYGIPLTVLTVPNYASCTIALKEFCHTQQISQIFANQEVELNECIRDRQI---LA 115 Query: 129 HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188 + ++ V++P G++ M+ V+TPFR A ++ L Q +++ P+ LT Sbjct: 116 AGLNLTLYEADVIVPKGTVKTGKGDMFHVFTPFRNAWVKQLQQHSIKTSSHPSEVLTH-Y 174 Query: 189 TPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPY 248 + + +P+ H++ +F + K Y + RD PA++GTS +SPY Sbjct: 175 QSIRAEKIVLEATKKSSEKWPLVSDIKKHVMPEFLQTKHADYKQYRDFPALKGTSGVSPY 234 Query: 249 LSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFI 308 L+IG LS + +++ + +L K+ F WLNEL WR+FY+HL+ YP++ G F Sbjct: 235 LAIGALSSKMLASQVLQHVPFILDNAKADIFCWLNELAWRDFYKHLLFAYPNLIKGITFS 294 Query: 309 PWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVD 368 + W + AW +G TG+P++DAAMRQL GWMHNRLRM+ ASFL K LLVD Sbjct: 295 EKYSNLNWPNSNEYFIAWCEGRTGYPLVDAAMRQLRQTGWMHNRLRMVVASFLTKHLLVD 354 Query: 369 WRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHW 428 WR+GE++FM L+DGD ++NNGGWQWAA TG D+ PYFRIFNP Q ++FDP G+FIR + Sbjct: 355 WRLGEQFFMQHLIDGDFSANNGGWQWAAGTGCDAQPYFRIFNPITQSEKFDPDGSFIRKY 414 Query: 429 LPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKA 466 LPEL+NVP +YIH PHS+L S Y IV+H +A Sbjct: 415 LPELSNVPVKYIHLPHSYLAATGQSECYWPAIVEHSQA 452 >gi|70732464|ref|YP_262226.1| deoxyribodipyrimidine photolyase [Pseudomonas fluorescens Pf-5] gi|68346763|gb|AAY94369.1| deoxyribodipyrimidine photolyase [Pseudomonas fluorescens Pf-5] Length = 481 Score = 362 bits (930), Expect = 6e-98, Method: Compositional matrix adjust. Identities = 191/472 (40%), Positives = 273/472 (57%), Gaps = 7/472 (1%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 + L+WLR+DLR+ DN AL + +AV++ +PEQW H + + F +L + Sbjct: 1 MQLIWLRSDLRLHDNTAL--SAAAQRGAAVAVYLLSPEQWLAHDDAPCKIDFWLRNLQSL 58 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128 +L + I + ++ + + L C Q +V L +N++Y I+E RRD + + LQ Sbjct: 59 STALGRLNIPLLIRSAATWEQAPQVLLELCRQLQVQMLHFNQEYGIHESRRDAAVTRALQ 118 Query: 129 HRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187 H I + D +L PGS+L + ++V++ FRK L A + P +L Sbjct: 119 HAGISVQGHLDQLLFQPGSVLTKSGGYFQVFSQFRKVCYSRLHTALPALVKAPGAQLPLS 178 Query: 188 VTPSNIPR---FFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244 + +P+ F P QA+ ++P G+ A L KF E+++YY +RD PA GTSQ Sbjct: 179 INADPLPQRVEGFPSPTQALRELWPAGDDEAQRRLEKFSDEQIHYYQSERDFPAKPGTSQ 238 Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304 LSPYL+ GV+SPRQC + GA +W+NEL+WREFY+H++ YP V Sbjct: 239 LSPYLAAGVISPRQCLHAALRGNQGEFESGSPGAVTWINELLWREFYKHILVGYPRVSRH 298 Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364 + F P TE ++W L AW++ TG PIIDAAMRQL GWMHNRLRM+ A FL K+ Sbjct: 299 RAFRPETEAVKWRHAPEELAAWQEARTGLPIIDAAMRQLLETGWMHNRLRMVVAMFLTKN 358 Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424 LL+DWR GE +FM L+DGDLA+NNGGWQW++STG DS PYFRIFNP Q ++FD +G F Sbjct: 359 LLIDWREGERFFMRHLIDGDLAANNGGWQWSSSTGTDSAPYFRIFNPISQSQKFDSEGRF 418 Query: 425 IRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYA 476 I+HWLP+L + + IH P + + YP PIVD ++ L + A Sbjct: 419 IKHWLPQLAGLNKKDIHNPAAMGGLFGVP-GYPAPIVDLSRSRERALAAFKA 469 >gi|148546013|ref|YP_001266115.1| deoxyribodipyrimidine photo-lyase [Pseudomonas putida F1] gi|148510071|gb|ABQ76931.1| Deoxyribodipyrimidine photo-lyase type I [Pseudomonas putida F1] Length = 475 Score = 362 bits (928), Expect = 9e-98, Method: Compositional matrix adjust. Identities = 199/476 (41%), Positives = 274/476 (57%), Gaps = 19/476 (3%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 +HL WLR+DLRI DN AL A+ IA+++ +P QW+ H +A + F +L + Sbjct: 1 MHLTWLRSDLRIDDNTALSASTER--GPTIALWLVSPGQWQAHDDAACKVDFWLRNLHDL 58 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128 ++SL + I +D + + + C Q +V + +N +Y INE RRD L+ Sbjct: 59 RQSLEKLNIPLLIRTIDTWDQAPQAVLDVCRQHQVQSVHWNEEYGINEQRRDDATRALLE 118 Query: 129 HRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT-- 185 I S+ D + PG++L + ++V++ F+K +++L RSLP A R+ Sbjct: 119 KSAIQAHSYLDQLFFRPGTVLTRSGDYFQVFSQFKKTCLEHL----HRSLPALARRVKRQ 174 Query: 186 GPVTPSNIP-----RFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ 240 P+ + P F A+ +P GE A L +F E + Y RD+PA Sbjct: 175 APLNIGSDPIPQHVEGFGKTTPALRDHWPAGEAEAQSRLSRFLDETIDDYQHLRDLPAKP 234 Query: 241 GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPS 300 GTSQLSPYL+ GV+SPRQC + G +W+NEL+WREFY+H+++ YP Sbjct: 235 GTSQLSPYLAAGVISPRQCLHGALASNRGEFDSGSMGVQTWINELLWREFYKHILSGYPQ 294 Query: 301 VCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASF 360 V + F TE + W L+AW+QG TGFPIIDAAMRQL GWMHNRLRMI A F Sbjct: 295 VSRHRAFRAQTEALPWRDAPADLEAWEQGRTGFPIIDAAMRQLLHTGWMHNRLRMIVAMF 354 Query: 361 LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDP 420 L K+LL+DWR GE +FM L+DGDLA+NNGGWQW+ASTG D+VPYFRIFNP Q +RFDP Sbjct: 355 LSKNLLIDWRKGERHFMRNLIDGDLAANNGGWQWSASTGTDAVPYFRIFNPVSQSQRFDP 414 Query: 421 QGTFIRHWLPELNNVPTQYIHAPHSWLDKNDL--SLNYPLPIVDHKKACHHTLNQY 474 QG FIRHW+PEL + + IH P + DL + +Y PIVD + L + Sbjct: 415 QGHFIRHWVPELQALDEKAIHQP---IKSTDLFGNTSYLSPIVDLSSSRQRALEAF 467 >gi|332535427|ref|ZP_08411214.1| deoxyribodipyrimidine photolyase [Pseudoalteromonas haloplanktis ANT/505] gi|332035151|gb|EGI71663.1| deoxyribodipyrimidine photolyase [Pseudoalteromonas haloplanktis ANT/505] Length = 464 Score = 362 bits (928), Expect = 9e-98, Method: Compositional matrix adjust. Identities = 191/471 (40%), Positives = 276/471 (58%), Gaps = 19/471 (4%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 L W R DLR+ N+AL A +N A+F + +QW+QH + Q + + +Q Sbjct: 4 LFWFRRDLRLFSNEALIQALNNGAKH--AIFFVSEKQWQQHQAAPIQIDLLKRRVAYLQS 61 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDK-LLEKRLQH 129 L+ GI + +F D L ++C V + N +YE+NEV RDK +L + + Sbjct: 62 QLADYGITLHIIEAPSFCDCTRELINFCKANDVKHVIANTEYELNEVNRDKAILHECDEL 121 Query: 130 RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189 + ++ ++ P G++ N + +MYKV+TPF++A ++ SLP P+T Sbjct: 122 SITFTLYEGDLIAPVGTVKNQSNEMYKVFTPFKRAWLKQYQDTHF-SLP------QWPLT 174 Query: 190 PSNIPRFFD----YPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245 P FD +P+ ++ ++ F +K+ Y +QRDIP+++GTS L Sbjct: 175 SD--PIEFDESDLLKSDGCSDKWPVDDETLSTVVDNFICDKLTSYDDQRDIPSVKGTSGL 232 Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305 SPYL++G++S +Q +++ + D+L KS F+W+NEL+WREFYRHL+A +P + G Sbjct: 233 SPYLALGIVSTKQLLINIQQRYPDILTTSKSKTFTWINELVWREFYRHLIAEFPKLSRGD 292 Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365 F + W K +AW +G TG+P++DAAM QL GWMHNRLRM+ ASFL K L Sbjct: 293 NFNEKYNAVVWRKSESDFKAWCEGRTGYPLVDAAMLQLKQTGWMHNRLRMVVASFLTKHL 352 Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425 L+DWR GE +FM L+DGDLASNNGGWQWAASTG D+ PYFR+FNP Q +RFDP G FI Sbjct: 353 LIDWREGERFFMQHLIDGDLASNNGGWQWAASTGCDAQPYFRVFNPIRQSERFDPTGKFI 412 Query: 426 RHWLPELNNVPTQYIHAPHSWL--DKNDLSLNYPLPIVDHKKACHHTLNQY 474 R +LPEL NVP ++IH PH++L D +P IVDHK A L + Sbjct: 413 RKYLPELENVPDKHIHFPHTYLAATGKDKECYWP-AIVDHKAARERALAAF 462 >gi|313497105|gb|ADR58471.1| PhrB [Pseudomonas putida BIRD-1] Length = 480 Score = 362 bits (928), Expect = 1e-97, Method: Compositional matrix adjust. Identities = 198/484 (40%), Positives = 280/484 (57%), Gaps = 20/484 (4%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 +HL WLR+DLRI DN AL A+ + IA+++ +P QW+ H + + F +L + Sbjct: 1 MHLTWLRSDLRIDDNTALSASTER--GQTIALWLVSPGQWQAHDDADCKVDFWLRNLHDL 58 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128 ++SL + I +D + + + C Q +V + +N +Y INE RRD L+ Sbjct: 59 RQSLEKLNIPLLIRTIDTWDQAPQAVLDICRQHQVQSVHWNEEYGINEQRRDDATRALLE 118 Query: 129 HRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT-- 185 I S+ D + PG++L + ++V++ F+K +++L RSLP A R+ Sbjct: 119 KSAIQAHSYLDQLFFRPGTVLTRSGDYFQVFSQFKKTCLEHL----HRSLPALARRVKRQ 174 Query: 186 GPVTPSNIP-----RFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ 240 P+ + P F A+ +P GE A L +F + + Y RD+PA Sbjct: 175 APLNIGSDPIPQHVEGFGKTTHALRDHWPAGEAEAQSRLSRFLDDTIDDYHHLRDLPAKP 234 Query: 241 GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPS 300 GTSQLSPYL+ GV+SPRQC + +G +W+NEL+WREFY+H+++ YP Sbjct: 235 GTSQLSPYLAAGVISPRQCLHGALAGNRGEFDSGSTGVQTWINELLWREFYKHILSGYPQ 294 Query: 301 VCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASF 360 V + F TE + W L+AW+QG TGFPIIDAAMRQL GWMHNRLRM+ A F Sbjct: 295 VSRHRAFRAQTEALPWRDAPADLEAWEQGRTGFPIIDAAMRQLLHTGWMHNRLRMVVAMF 354 Query: 361 LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDP 420 L K+LL+DWR GE +FM L+DGDLA+NNGGWQW+ASTG D+VPYFRIFNP Q +RFDP Sbjct: 355 LSKNLLIDWRKGERHFMRHLIDGDLAANNGGWQWSASTGTDAVPYFRIFNPVSQSQRFDP 414 Query: 421 QGTFIRHWLPELNNVPTQYIHAPHSWLDKNDL--SLNYPLPIVDHKKACHHTLNQYYA-A 477 QG FIRHW+PEL + + IH P + DL + +Y PIVD + L + A Sbjct: 415 QGQFIRHWVPELQELDEKAIHQP---IKPTDLFGNTSYLSPIVDLSSSRQRALEAFKGLA 471 Query: 478 KKQS 481 ++Q+ Sbjct: 472 RRQN 475 >gi|209809629|ref|YP_002265168.1| deoxyribodipyrimidine photo-lyase (photoreactivating enzyme) [Aliivibrio salmonicida LFI1238] gi|208011192|emb|CAQ81620.1| deoxyribodipyrimidine photo-lyase (photoreactivating enzyme) [Aliivibrio salmonicida LFI1238] Length = 479 Score = 360 bits (925), Expect = 2e-97, Method: Compositional matrix adjust. Identities = 209/482 (43%), Positives = 282/482 (58%), Gaps = 17/482 (3%) Query: 8 SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67 + VW R DLRI DN AL AA N + IA+++ + QW++H S+ Q I LL+ Sbjct: 6 TTQCVWFRTDLRIADNPALSAALANQEP-TIALYVVSEAQWKKHHKSSIQIDLIKRRLLE 64 Query: 68 VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127 ++K L + + C F ++ E L C +T LF N++YE +E+ RD + +L Sbjct: 65 LEKELQEINVPLIIVSCPWFKNTSEQLTMLCNDLNITHLFANKEYEADELARDADVRSQL 124 Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKA----LIQNL--VQADLRSLPVPA 181 + + ++ + G I+N + YKV+TPF+KA Q+ ++ + S+P+ Sbjct: 125 TN-IESHFYNAKCAVTVGKIINKTQKPYKVFTPFKKAWRAYFYQHFPTIEKVIPSVPLSE 183 Query: 182 IRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQG 241 +L+ S + R F ++P+ L +R FC+EK Y +QRD PAI G Sbjct: 184 QQLS--TLTSYLDRKFTSSMNNESKVWPVSNTAILKKMRLFCREKSQDYHDQRDYPAIDG 241 Query: 242 TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSV 301 TSQ+SPYL+IG LS +QC RL E + L G WL+ELIWREFY HL+ F+PS+ Sbjct: 242 TSQISPYLAIGALSAKQCILRLHLEANNQL---SQGQEIWLDELIWREFYTHLLYFFPSL 298 Query: 302 CMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFL 361 F+ + + I+WN + W G TG+PI+DAAM+QLNT GWMHNRLRMITASFL Sbjct: 299 SKNHAFLDFEKHIQWNNKQDQFEQWCNGETGYPIVDAAMKQLNTTGWMHNRLRMITASFL 358 Query: 362 VKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQ 421 VKDL +DWR GE+YFMS L+DGD ASNNGGWQW AS G DS PYFRIFNPT Q +RFD Sbjct: 359 VKDLHIDWRWGEQYFMSTLIDGDFASNNGGWQWCASVGCDSSPYFRIFNPTTQSERFDNN 418 Query: 422 GTFIRHWLPELNNVPTQYIHAPH-SWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQ 480 G FI++WLP L + + +H P L K D NY PIVDH TL Y AK Q Sbjct: 419 GVFIKYWLPNLAALLGKQLHQPSVKPLLKPD---NYVDPIVDHSVQRLKTLELYKQAKIQ 475 Query: 481 SL 482 + Sbjct: 476 DV 477 >gi|77362362|ref|YP_341936.1| putative deoxyribodipyrimidine photolyase [Pseudoalteromonas haloplanktis TAC125] gi|76877273|emb|CAI89490.1| putative deoxyribodipyrimidine photolyase [Pseudoalteromonas haloplanktis TAC125] Length = 468 Score = 360 bits (924), Expect = 3e-97, Method: Compositional matrix adjust. Identities = 191/467 (40%), Positives = 273/467 (58%), Gaps = 7/467 (1%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 L W R DLR+ N+AL A +N A+F +QW+QH + Q + + + + Sbjct: 4 LFWFRRDLRLFSNEALIQALNNGANH--AIFFICEKQWQQHQAAPIQIDLLKRRITYLHQ 61 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDK-LLEKRLQH 129 L+ GI F D L +C V + N +YE+NEV RDK +L K + Sbjct: 62 QLADHGITLHIIDAPYFADCETQLIDFCKANNVKHVIANTEYELNEVNRDKAILAKCDEL 121 Query: 130 RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPV-PAIRLTGPV 188 + ++ ++ P GS+ N + +MYKV+TPF++A ++ ++ SLP P ++G Sbjct: 122 SITFTLYEGDLIAPVGSVKNQSNEMYKVFTPFKRAWLKQYIEVHF-SLPQWPVEHVSGGA 180 Query: 189 TPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPY 248 S + +P+ ++ ++ F +K+ Y + RDIP+I+GTS LSPY Sbjct: 181 QLSKNETNL-LKGDSSSEKWPVDDKTLATVVDNFICDKLTSYDDHRDIPSIKGTSGLSPY 239 Query: 249 LSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFI 308 L++G++S +Q +++ + D+L KS F+W+NELIWREFYRHL+A +P + G F Sbjct: 240 LALGIISTKQLLINIQQRYPDILSTSKSKTFTWVNELIWREFYRHLIAQFPKLSRGDNFN 299 Query: 309 PWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVD 368 + W +AW +G TG+P++DAAMRQL GWMHNRLRM+ ASFL K LL+D Sbjct: 300 EKYNAVVWRSSDDDFKAWCEGRTGYPLVDAAMRQLLQTGWMHNRLRMVVASFLTKHLLID 359 Query: 369 WRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHW 428 WR GE +FM L+DGDLASNNGGWQWAASTG D+ PYFR+FNP Q +RFDP G FIR + Sbjct: 360 WRKGERFFMQHLIDGDLASNNGGWQWAASTGCDAQPYFRVFNPIRQSERFDPNGEFIRKY 419 Query: 429 LPELNNVPTQYIHAPHSWLDKNDLSLNYPLP-IVDHKKACHHTLNQY 474 +PEL NVP ++IH PHS+L S + P IVDHK A L + Sbjct: 420 IPELENVPDKHIHFPHSYLASLGQSDSCYWPAIVDHKAARERALAAF 466 >gi|26987475|ref|NP_742900.1| deoxyribodipyrimidine photo-lyase [Pseudomonas putida KT2440] gi|24982139|gb|AAN66364.1|AE016264_8 deoxyribodipyrimidine photolyase [Pseudomonas putida KT2440] Length = 480 Score = 358 bits (919), Expect = 1e-96, Method: Compositional matrix adjust. Identities = 197/476 (41%), Positives = 272/476 (57%), Gaps = 19/476 (3%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 +HL WLR+DLRI DN AL A+ IA+++ +P QW+ H + + F +L + Sbjct: 1 MHLTWLRSDLRIDDNTALSASTER--GPTIALWLVSPGQWQAHDDADCKVDFWLRNLHDL 58 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128 ++SL + I +D + + + C Q +V + +N +Y INE RRD L+ Sbjct: 59 RQSLEKLNIPLLIRTIDTWDQAPQAVLDICRQHQVQSVHWNEEYGINEQRRDDATRAMLE 118 Query: 129 HRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT-- 185 I S D + PG++L + ++V++ F+K +++L RSLP A R+ Sbjct: 119 KSAIQAHSHLDQLFFRPGTVLTRSGDYFQVFSQFKKTCLEHL----HRSLPALARRVKRQ 174 Query: 186 GPVTPSNIP-----RFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ 240 P+ + P F A+ +P GE A L +F E + Y RD+PA Sbjct: 175 APLNIGSDPIPQHVEGFGKTTPALRDHWPAGEAEAQSRLSRFLDETIDDYHHLRDLPAKP 234 Query: 241 GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPS 300 GTSQLSPYL+ GV+SPRQC + +G +W+NEL+WREFY+H+++ YP Sbjct: 235 GTSQLSPYLAAGVISPRQCLHGALAGNRGEFDSGSTGVQTWINELLWREFYKHILSGYPQ 294 Query: 301 VCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASF 360 V + F TE + W L AW+QG TGFPIIDAAMRQL GWMHNRLRM+ A F Sbjct: 295 VSRHRAFRAQTEALPWRDAPADLAAWEQGRTGFPIIDAAMRQLLHTGWMHNRLRMVVAMF 354 Query: 361 LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDP 420 L K+LL+DWR GE +FM L+DGDLA+NNGGWQW+ASTG D+VPYFRIFNP Q +RFDP Sbjct: 355 LSKNLLIDWRKGERHFMRHLIDGDLAANNGGWQWSASTGTDAVPYFRIFNPVSQSQRFDP 414 Query: 421 QGTFIRHWLPELNNVPTQYIHAPHSWLDKNDL--SLNYPLPIVDHKKACHHTLNQY 474 QG FIRHW+PEL + + IH P + DL + +Y PIVD + L + Sbjct: 415 QGRFIRHWVPELQELDEKAIHQP---IKSTDLFGNTSYLSPIVDLSSSRQRALEAF 467 >gi|254489691|ref|ZP_05102887.1| deoxyribodipyrimidine photolyase family [Methylophaga thiooxidans DMS010] gi|224465100|gb|EEF81353.1| deoxyribodipyrimidine photolyase family [Methylophaga thiooxydans DMS010] Length = 464 Score = 357 bits (917), Expect = 2e-96, Method: Compositional matrix adjust. Identities = 195/472 (41%), Positives = 276/472 (58%), Gaps = 14/472 (2%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 LVWLRNDLR+ DN A+ A D + VFIATP+QW+QH SA + AS+ + Sbjct: 4 TQLVWLRNDLRLDDNPAISQAQQQGDLHL--VFIATPKQWQQHDESAAKQGLKAASIEDI 61 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128 + L++ G+ F + F D + L ++C Q+ + +++N++ ++E RRD + L+ Sbjct: 62 NQQLAKLGVPFTILETDWFADIPKLLKTFCQQKNIRDIWFNQETPLDERRRDDAVIDVLE 121 Query: 129 H-RVICKSFD-DSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 V C + D D ++ P +L + +KV+TP+ + +Q L + PVP + Sbjct: 122 GFGVNCHALDADLIVTVP--VLTQQNEPFKVFTPYYRRWLQILQETQKPPYPVPDKQGEA 179 Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246 P + D D ++P E + L L +FC+ KV Y + RDIPA GTS LS Sbjct: 180 IAVDLLKPGWSD---DYRDDLWPADEASVLKKLSQFCRNKVKAYPKYRDIPAESGTSTLS 236 Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP 306 PYLSIG + PR+ ++ + + + WL EL WR+FYR L+ +P + M KP Sbjct: 237 PYLSIGRIGPRRLLASIQYHCSEQGLHWQDN--DWLRELAWRDFYRQLLLHFPRLSMEKP 294 Query: 307 FIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLL 366 F P T+ + W D AW +G TGFPI+DAAMRQL GWMHNRLRMITASFL K LL Sbjct: 295 FKPETDNVVWRDDETGFHAWCEGKTGFPIVDAAMRQLQQTGWMHNRLRMITASFLTKLLL 354 Query: 367 VDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIR 426 +DWR GE++FM LLDG+ A+NNGGWQW+ASTG D+ PYFR+FNPT Q +RFDP G FIR Sbjct: 355 IDWRRGEQFFMQHLLDGEFAANNGGWQWSASTGVDAAPYFRVFNPTRQSERFDPDGEFIR 414 Query: 427 HWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478 ++PEL + + IH P D+ YP+PI+D+K A ++ + K Sbjct: 415 RFVPELKKLSGKQIHNPS---DQLRTETGYPMPIIDYKPARQTAIDAFADLK 463 >gi|262278230|ref|ZP_06056015.1| deoxyribodipyrimidine photolyase FAD-binding [Acinetobacter calcoaceticus RUH2202] gi|262258581|gb|EEY77314.1| deoxyribodipyrimidine photolyase FAD-binding [Acinetobacter calcoaceticus RUH2202] Length = 480 Score = 357 bits (916), Expect = 2e-96, Method: Compositional matrix adjust. Identities = 196/468 (41%), Positives = 275/468 (58%), Gaps = 17/468 (3%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 L+W R DLR+ D+ AL+ AC + I + I +PEQW+ H + + +F L Q++K Sbjct: 7 LIWFRQDLRVRDHAALWHACQQGPS--IGLIILSPEQWKIHHDAPIKINFYLRQLQQLKK 64 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL-QH 129 L Q I + D +++ Q + ++ N + +NE++RDK++++ L Q Sbjct: 65 ELEQLNIPLIIQVIPYWKDIADYISKLAQQLNIENVYSNIEVGVNELKRDKIVQQALNQQ 124 Query: 130 RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADL-RSLPVPAIRLTGPV 188 F D + P SI N + Q Y+V++ F+KA L + L + P+P + P Sbjct: 125 SKELFLFHDRTIFPLRSIRNQSQQPYQVFSAFKKACYSKLDISGLPQCYPIPEKQNAYPQ 184 Query: 189 TPSNIPR--------FFD--YPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPA 238 + SNI FFD P + D ++P GE AL L F + + +Y +RD P Sbjct: 185 SFSNIKSLGLEDIEAFFDSSIPKEQQD-LWPTGEDFALEQLDLFINDHLSHYKLERDFPN 243 Query: 239 IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFY 298 ++GTSQLSPYL++G+LS RQC L G +WL+EL+WREFY+H++ + Sbjct: 244 VKGTSQLSPYLNLGILSIRQCLQALFRAEHGNFHLTNEGQQTWLDELLWREFYQHILFDF 303 Query: 299 PSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITA 358 P V PF T+ I+W + L AW+ G TG PIIDA MRQL GWMHNR+RMITA Sbjct: 304 PHVSKHYPFKKNTQNIKWENNQEHLVAWQNGQTGIPIIDAGMRQLQKTGWMHNRVRMITA 363 Query: 359 SFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRF 418 FL K+LL+DWR+GE++FM L+DGDLA+NNGGWQW ASTG D+VPYFRIFNP Q K+F Sbjct: 364 MFLCKNLLIDWRVGEQWFMQHLIDGDLAANNGGWQWCASTGTDAVPYFRIFNPIAQSKKF 423 Query: 419 DPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKA 466 DP G +IR W+ EL ++ + IH P+S K L LNYP PIVD K+ Sbjct: 424 DPNGDYIRQWVNELAHLDNKMIHEPYS--TKTHLQLNYPKPIVDLKET 469 >gi|197336881|ref|YP_002158424.1| deoxyribodipyrimidine photo-lyase [Vibrio fischeri MJ11] gi|197314133|gb|ACH63582.1| deoxyribodipyrimidine photo-lyase [Vibrio fischeri MJ11] Length = 464 Score = 357 bits (916), Expect = 3e-96, Method: Compositional matrix adjust. Identities = 202/467 (43%), Positives = 269/467 (57%), Gaps = 13/467 (2%) Query: 18 LRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQKSLSQKGI 77 +R DN AL AA N A+F+ + QW++H + Q I L++++ L Q I Sbjct: 1 MRTIDNPALQAAVENQQP-TFALFVYSESQWKKHNKAPIQIDLIKRRLVELKNELEQLNI 59 Query: 78 VFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHRVICKSFD 137 F + + + + V LF N++YE +E RD + + L + C FD Sbjct: 60 PLIVISSPLFSEIPAKITALFSELSVNALFANKEYEHDERLRDTQVYESLLN-TNCSFFD 118 Query: 138 DSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPSNIPRFF 197 +LP G+I+N Q YKV+TPF+KA + Q L P + Sbjct: 119 AKCILPVGTIINRTQQPYKVFTPFKKAWKASFYQQQPHITKTERSVLCDPKLIEKLSLNN 178 Query: 198 DYPFQAIDP----MFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGV 253 D F + + + + + ILR+FC++KV Y RD P IQGTSQLSPYL+IG Sbjct: 179 DDSFTFLSSNESGSWTVSTKAIIDILRQFCRQKVSQYHNNRDYPEIQGTSQLSPYLAIGA 238 Query: 254 LSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEK 313 +S +QC RL E L G WL+ELIWREFY HL+ FYP++ + F+ + + Sbjct: 239 ISAKQCALRLHLEANYEL---NQGEDIWLDELIWREFYTHLLHFYPNLSKNQAFLSYDKY 295 Query: 314 IEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGE 373 IEW+ + + W +G TGFPI+DAAM+QLNT GWMHNRLRMITASFLVKDL +DWR GE Sbjct: 296 IEWDNNLDNFERWCKGETGFPIVDAAMKQLNTTGWMHNRLRMITASFLVKDLHIDWRWGE 355 Query: 374 EYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELN 433 +YFMS+L+DGD ASNNGGWQW AS G DS PYFRIFNP QGK+FD TFI+HWLPEL Sbjct: 356 QYFMSKLIDGDFASNNGGWQWCASVGCDSSPYFRIFNPITQGKKFDADCTFIKHWLPELK 415 Query: 434 NVPTQYIHAPH-SWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479 + + IH P+ + L K+D NYP IVDH + + Y AK+ Sbjct: 416 ALSNKEIHHPNPAPLLKSD---NYPDQIVDHAQQRIKVIEVYKQAKQ 459 >gi|315123469|ref|YP_004065475.1| putative deoxyribodipyrimidine photolyase [Pseudoalteromonas sp. SM9913] gi|315017229|gb|ADT70566.1| putative deoxyribodipyrimidine photolyase [Pseudoalteromonas sp. SM9913] Length = 464 Score = 357 bits (916), Expect = 3e-96, Method: Compositional matrix adjust. Identities = 183/468 (39%), Positives = 273/468 (58%), Gaps = 13/468 (2%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 L W R DLR+ N+AL A +N I F +QW QH + Q + + +++ Sbjct: 4 LFWFRRDLRLFSNEALIEALNNGAKHTI--FFVCEKQWAQHNTAPIQIDLLKRRVSYIRE 61 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL-QH 129 L++ GI + F D L +C Q + + N++YE+NE RDK ++ + Q Sbjct: 62 KLAEYGINLHVIEAPYFTDCQTKLLDFCQQYEIKHIIANKEYELNEFNRDKAIQAQCDQQ 121 Query: 130 RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNL--VQADLRSLPVPAIRLTGP 187 ++ ++ ++ P GS+ +MYKV+TPF++A ++ L S P+ + Sbjct: 122 QITFTLYEGDIIAPVGSVRTQNNEMYKVFTPFKRAWLKQYQDTHFSLVSWPLSS------ 175 Query: 188 VTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSP 247 P +I +P+ + ++ F +K+ Y + RDIP+++GTS LSP Sbjct: 176 -NPIDIESCELLSSDDSSKKWPVDDDTLASVVDNFIHDKLASYDDVRDIPSVKGTSGLSP 234 Query: 248 YLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPF 307 YL++GV+S +Q +++++ D+L KS F+W+NELIWREFY+HL+A +P + G F Sbjct: 235 YLALGVVSSKQLMVNIQQQYPDILTTSKSKTFTWVNELIWREFYKHLIAEFPKLSRGANF 294 Query: 308 IPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLV 367 + + W + + W +G TG+P++DAAM+QL GWMHNRLRM+ ASFL K LL+ Sbjct: 295 NEKYDSVAWRDNEAEFKLWCEGRTGYPLVDAAMQQLLQTGWMHNRLRMVVASFLTKHLLI 354 Query: 368 DWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRH 427 DWR GE++FM L+DGDLASNNGGWQWAASTG D+ PYFR+FNP Q +RFDP G FIR Sbjct: 355 DWRKGEQFFMQHLIDGDLASNNGGWQWAASTGCDAQPYFRVFNPITQSERFDPSGQFIRK 414 Query: 428 WLPELNNVPTQYIHAPHSWLDKNDLSLNYPLP-IVDHKKACHHTLNQY 474 +LPEL VP ++IH PH++L S + P IVDHK A L+ + Sbjct: 415 YLPELEKVPDKHIHFPHTYLAATGQSEHCYWPAIVDHKAARARALDAF 462 >gi|299769190|ref|YP_003731216.1| deoxyribodipyrimidine photo-lyase [Acinetobacter sp. DR1] gi|298699278|gb|ADI89843.1| deoxyribodipyrimidine photo-lyase [Acinetobacter sp. DR1] Length = 480 Score = 356 bits (914), Expect = 4e-96, Method: Compositional matrix adjust. Identities = 198/468 (42%), Positives = 277/468 (59%), Gaps = 17/468 (3%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 L+W R DLR+ D+ AL+ AC + I + I +PEQW+ H + + +F L Q++K Sbjct: 7 LIWFRQDLRVRDHAALWHACQQGPS--IGLVILSPEQWKIHHDAPIKINFYLRQLQQLKK 64 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL-QH 129 L + I + D +++ Q + ++ N + +NE++RDK +++ L Q Sbjct: 65 ELEKLNIPLIIQVIPYWKDIADYICELTHQLHIENVYSNIEVGVNELKRDKTVQQALNQQ 124 Query: 130 RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADL-RSLPVPAIRLTGPV 188 F D + P SI N + Q Y+V+ F+KA L + L + P+P + + P Sbjct: 125 GKELFLFHDRTIFPLRSIRNQSQQPYQVFGAFKKACYSKLDISGLPQCYPIPEKQKSNPE 184 Query: 189 TPSNIPR--------FFDYPF-QAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAI 239 + SNI FFD + ++P GE AL L F + + Y +RD P + Sbjct: 185 SDSNIKSLSLEDIEAFFDSSISKDQQNLWPTGEGFALEQLDVFIENHLSDYKLERDFPNV 244 Query: 240 QGTSQLSPYLSIGVLSPRQCWNRL-KEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFY 298 +GTSQLSPYL++G+LS RQC L + E + I G +WL+EL+WREFY+H++ + Sbjct: 245 KGTSQLSPYLNLGILSIRQCLQALFRTEHGNFHIA-NEGQQTWLDELLWREFYQHILFDF 303 Query: 299 PSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITA 358 P V PF T+KI+WN + L AW+ G TG PIIDA MRQL GWMHNR+RMITA Sbjct: 304 PHVSKHIPFKKDTQKIKWNHNPEHLTAWQTGQTGIPIIDAGMRQLQKTGWMHNRVRMITA 363 Query: 359 SFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRF 418 FL K+LL+DWRIGE++FM L+DGDLA+NNGGWQW ASTG D+VPYFRIFNP Q K+F Sbjct: 364 MFLCKNLLIDWRIGEQWFMEHLIDGDLAANNGGWQWCASTGTDAVPYFRIFNPIAQSKKF 423 Query: 419 DPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKA 466 DP G +IR W+ EL ++ + IH P+S K L LNYP PIVD K+ Sbjct: 424 DPNGDYIRQWVDELADLDNKMIHEPYS--SKTPLQLNYPKPIVDLKET 469 >gi|193077986|gb|ABO12900.2| deoxyribodipyrimidine photolyase (photoreactivation) FAD-binding [Acinetobacter baumannii ATCC 17978] Length = 480 Score = 356 bits (913), Expect = 5e-96, Method: Compositional matrix adjust. Identities = 195/470 (41%), Positives = 275/470 (58%), Gaps = 15/470 (3%) Query: 8 SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67 + L+W R DLRI D+ AL+ A + + + I +PEQW+QH + + F L Sbjct: 4 AYQLIWFRQDLRIHDHAALWHASQQGPS--LGLVILSPEQWKQHADAPIKIGFYLRQLRT 61 Query: 68 VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127 +QK L+ I + + ++ + + + ++ N + +NE++RDK ++ L Sbjct: 62 LQKELAALHIPLVIQVIPYWKEIANFISDFSKKYNIENVYANIEIGVNELKRDKTVQDYL 121 Query: 128 -QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADL-RSLPVPAIRLT 185 +H F D + P SI N + Q Y+V++ F+KA L + L + PVP + Sbjct: 122 NRHGKELFLFHDRTIFPLRSIRNQSQQPYQVFSAFKKACYTKLDTSGLPQCYPVPNKQNE 181 Query: 186 GP--------VTPSNIPRFFDYPF-QAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDI 236 P + I + F + ++P+GEQ AL L +F +E V +Y +RD Sbjct: 182 VPLDFLQGKNIDLDEIEKLFCSSLSKEQQDLWPVGEQYALEQLDQFIEESVCHYKVERDF 241 Query: 237 PAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMA 296 P IQ TS+LSPYL+IG+LS RQC L G +WL+EL+WREFY+H++ Sbjct: 242 PNIQATSKLSPYLNIGILSIRQCLQALFRNQHGNFHLVNEGQQTWLDELLWREFYQHILF 301 Query: 297 FYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMI 356 +P V PF T+KI+WN + L AW+ G TG PI+DA MRQL GWMHNR+RMI Sbjct: 302 DFPHVSKHIPFKKDTQKIKWNHNPEHLTAWQMGQTGIPIVDAGMRQLLQTGWMHNRVRMI 361 Query: 357 TASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGK 416 TA FL K+LL+DWRIGE++FM L+DGDLA+NNGGWQW ASTG D+VPYFRIFNP Q K Sbjct: 362 TAMFLCKNLLIDWRIGEQWFMQHLIDGDLAANNGGWQWCASTGTDAVPYFRIFNPITQSK 421 Query: 417 RFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKA 466 +FDP+G +IR W+ EL ++ + IH P+S K DL LNYP PIVD K+ Sbjct: 422 KFDPEGEYIRQWVKELAHLDNKTIHEPYS--SKTDLGLNYPKPIVDLKET 469 >gi|239501100|ref|ZP_04660410.1| deoxyribodipyrimidine photolyase [Acinetobacter baumannii AB900] Length = 480 Score = 356 bits (913), Expect = 5e-96, Method: Compositional matrix adjust. Identities = 195/470 (41%), Positives = 276/470 (58%), Gaps = 15/470 (3%) Query: 8 SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67 + L+W R DLRI D+ AL+ A + + + I +PEQW+QH + + F L Sbjct: 4 AYQLIWFRQDLRIHDHAALWHASQQGTS--LGLVILSPEQWKQHADAPIKISFYLRQLRT 61 Query: 68 VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127 +QK L+ I + + ++ + + + ++ N + +NE++RDK ++ L Sbjct: 62 LQKELAALHIPLVIQVIPYWKEIANFISDFSKKYNIENVYANIEIGVNELKRDKTVQDYL 121 Query: 128 -QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADL-RSLPVPAIRLT 185 +H F D + P SI N + Q Y+V++ F+KA L + L + PVP + Sbjct: 122 NRHGKELFLFHDRTIFPLRSIRNQSQQPYQVFSAFKKACYTKLDTSGLPQCYPVPNKQNE 181 Query: 186 GP--------VTPSNIPRFFDYPF-QAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDI 236 P + I + F + ++P+GEQ AL L +F +E V +Y +RD Sbjct: 182 VPLDFLQGKNIDLDEIEKLFCSSLSKEQQDLWPVGEQYALDQLDQFIEESVCHYKLERDF 241 Query: 237 PAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMA 296 P IQGTS+LSPYL+IG+LS RQC L G +WL+EL+WREFY+H++ Sbjct: 242 PHIQGTSKLSPYLNIGILSIRQCLQALFRNQHGNFHLVNEGQQTWLDELLWREFYQHILF 301 Query: 297 FYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMI 356 +P V PF T+KI+WN + L AW+ G TG PI+DA MRQL GWMHNR+RMI Sbjct: 302 DFPHVSKHIPFKKDTQKIKWNHNPEHLTAWQTGQTGIPIVDAGMRQLLQTGWMHNRVRMI 361 Query: 357 TASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGK 416 TA FL K+LL+DWRIGE++FM L+DGDLA+NNGGWQW ASTG D+VPYFRIF+P Q K Sbjct: 362 TAMFLCKNLLIDWRIGEQWFMQHLIDGDLAANNGGWQWCASTGTDAVPYFRIFHPIAQSK 421 Query: 417 RFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKA 466 +FDP+G +IR W+ EL ++ + IH P+S K DL LNYP PIVD K+ Sbjct: 422 KFDPEGEYIRQWVKELAHLDNKTIHEPYS--SKTDLGLNYPKPIVDLKET 469 >gi|114564201|ref|YP_751715.1| deoxyribodipyrimidine photo-lyase [Shewanella frigidimarina NCIMB 400] gi|114335494|gb|ABI72876.1| Deoxyribodipyrimidine photo-lyase type I [Shewanella frigidimarina NCIMB 400] Length = 477 Score = 356 bits (913), Expect = 6e-96, Method: Compositional matrix adjust. Identities = 197/477 (41%), Positives = 269/477 (56%), Gaps = 15/477 (3%) Query: 11 LVWLRNDLRITDNKALYAACH---NSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67 L+W R DLR+ DN AL AAC ++ V AV+ TP QW QH ++ Q FI + Sbjct: 7 LMWFRQDLRVADNPALVAACEFASSNRGHVRAVYFVTPAQWAQHDVAPIQIDFIQRHVNL 66 Query: 68 VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127 + ++L+ GI +FD+ L +Y Q + ++ + EINE RRD+ L + Sbjct: 67 LAQALAVLGIHLDVLHAQDFDEVQTLLAAYIAQHDIAAVYAANEPEINERRRDRAL---I 123 Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187 V D +L G + N A MYKV++PF K Q + + VPA Sbjct: 124 DSGVPLTLIDQDCVLAAGQVKNLAGDMYKVFSPFAKKWKSIAGQRAIVPVAVPAPIAAVL 183 Query: 188 VTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSP 247 TP+ + F+ ++ +P GE A IL +F +V Y +RD PA++GTS+LSP Sbjct: 184 ATPNEV--VFNC-YKMSSEQWPAGEGAAKRILDQFLANQVADYQAERDFPALEGTSRLSP 240 Query: 248 YLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPF 307 +L+IGV+S RQC + + L++ A +WLNELIWREFYRHL+ +P + M F Sbjct: 241 FLAIGVISSRQCVAAILARYPQALVEDTCPAKTWLNELIWREFYRHLLVAFPRLSMNHNF 300 Query: 308 IPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLV 367 + I W + AW G TG+PIIDAAMRQLN GWMHNRLRM+ ASFL K LLV Sbjct: 301 NELGDGIVWRNNLAEFTAWCDGQTGYPIIDAAMRQLNQTGWMHNRLRMVVASFLTKHLLV 360 Query: 368 DWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRH 427 DWR GE YF +L+DGDLA+NNGGWQW+A TG D+ PYFR+FNP Q +FDP +FI+ Sbjct: 361 DWRWGERYFRQKLIDGDLAANNGGWQWSAGTGCDAQPYFRVFNPMTQSSKFDPDASFIKR 420 Query: 428 WLPELNNVPTQYIHAPHSWLDKNDL-----SLNYPLPIVDHKKACHHTLNQYYAAKK 479 ++ EL+ IH P + ++ NDL YP PIV+HK A + A K+ Sbjct: 421 YVSELSAWSLADIHQPKT-INVNDLFAQRQDDRYPQPIVEHKMARLRAIEVLSALKR 476 >gi|260549666|ref|ZP_05823883.1| deoxyribodipyrimidine photolyase FAD-binding [Acinetobacter sp. RUH2624] gi|260407183|gb|EEX00659.1| deoxyribodipyrimidine photolyase FAD-binding [Acinetobacter sp. RUH2624] Length = 480 Score = 355 bits (912), Expect = 6e-96, Method: Compositional matrix adjust. Identities = 195/467 (41%), Positives = 279/467 (59%), Gaps = 15/467 (3%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 L+W R DLRI D+ AL+ AC + I + I +PEQW+QH + + F L ++QK Sbjct: 7 LIWFRQDLRIHDHAALWHACQQGPS--IGLVILSPEQWKQHDDAPIKISFYLRQLKELQK 64 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL-QH 129 L+ I ++D+ +++ + + + ++ N + NE++RDK ++ L + Sbjct: 65 ELASLHIPLVIQVIPYWEDTAKFISDFSKKYNIENVYANIEMGANELKRDKTVQDSLNKE 124 Query: 130 RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADL-RSLPVP----AIRL 184 F D + P SI N + Q Y+V++ F+KA L + L + P+P I L Sbjct: 125 SKELFLFHDRTIFPLRSIRNQSQQPYQVFSAFKKACYAKLNTSGLPQCFPLPHKQNEISL 184 Query: 185 T----GPVTPSNIPRFFDYPF-QAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAI 239 V + I + F + ++P+GE AL L +F ++ V +Y +RD P + Sbjct: 185 EFLDEKSVDLAEIEKLFCSSISKEQQDLWPVGESYALEQLDQFVEDSVSHYKVERDFPHV 244 Query: 240 QGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYP 299 GTS+LSPYL+IG+LS RQC L G +WL+ELIWREFY+H++ +P Sbjct: 245 HGTSKLSPYLNIGILSVRQCLQALFRNQHGNFHLDNEGQQTWLDELIWREFYQHILFDFP 304 Query: 300 SVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITAS 359 V PF T+KI+WN + L+AW+ G TG PI+DA MRQL GWMHNR+RMITA Sbjct: 305 YVSKHLPFKKDTQKIKWNHNPEHLKAWQTGQTGIPIVDAGMRQLLQTGWMHNRVRMITAM 364 Query: 360 FLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFD 419 FL K+LL+DWRIGE++FM L+DGDLA+NNGGWQW ASTG D+VPYFRIFNP Q ++FD Sbjct: 365 FLCKNLLIDWRIGEQWFMQHLIDGDLAANNGGWQWCASTGTDAVPYFRIFNPISQSQKFD 424 Query: 420 PQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKA 466 P G +IR W+ EL ++ + IH P+S +K +LSLNYP PIVD K+ Sbjct: 425 PNGDYIRKWVKELAHLDNKSIHDPYS--NKINLSLNYPKPIVDLKET 469 >gi|184159014|ref|YP_001847353.1| deoxyribodipyrimidine photolyase [Acinetobacter baumannii ACICU] gi|332874793|ref|ZP_08442663.1| deoxyribodipyrimidine photo-lyase [Acinetobacter baumannii 6014059] gi|183210608|gb|ACC58006.1| Deoxyribodipyrimidine photolyase [Acinetobacter baumannii ACICU] gi|322508994|gb|ADX04448.1| Deoxyribodipyrimidine photolyase Photoreactivation [Acinetobacter baumannii 1656-2] gi|323518978|gb|ADX93359.1| deoxyribodipyrimidine photolyase [Acinetobacter baumannii TCDC-AB0715] gi|332737054|gb|EGJ68011.1| deoxyribodipyrimidine photo-lyase [Acinetobacter baumannii 6014059] Length = 480 Score = 355 bits (912), Expect = 7e-96, Method: Compositional matrix adjust. Identities = 195/470 (41%), Positives = 275/470 (58%), Gaps = 15/470 (3%) Query: 8 SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67 + L+W R DLRI D+ AL+ A + + + I +PEQW+QH + + F L Sbjct: 4 AYQLIWFRQDLRIHDHAALWHASQQGPS--LGLVILSPEQWKQHADAPIKISFYLRQLRT 61 Query: 68 VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127 +QK L+ I + + ++ + + + ++ N + +NE++RDK ++ L Sbjct: 62 LQKELAALHIPLVIQVIPYWKEIANFISDFSKKYNIENVYANIEIGVNELKRDKNVQDYL 121 Query: 128 -QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADL-RSLPVPAIRLT 185 +H F D + P SI N + Q Y+V++ F+KA L + L + PVP + Sbjct: 122 NRHGKELFLFHDRTIFPLRSIRNQSQQPYQVFSAFKKACYTKLDTSGLSQCYPVPNKQNE 181 Query: 186 GP--------VTPSNIPRFFDYPF-QAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDI 236 P + I + F + ++P+GEQ AL L +F +E V +Y +RD Sbjct: 182 VPLDFLQGKNIDLDEIEKLFCSSLSKEQQDLWPVGEQYALEQLDQFIEESVCHYKVERDF 241 Query: 237 PAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMA 296 P IQ TS+LSPYL+IG+LS RQC L G +WL+EL+WREFY+H++ Sbjct: 242 PHIQATSKLSPYLNIGILSIRQCLQALFRNQHGNFHLVNEGQQTWLDELLWREFYQHILF 301 Query: 297 FYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMI 356 +P V PF T+KI+WN + L AW+ G TG PI+DA MRQL GWMHNR+RMI Sbjct: 302 DFPHVSKHIPFKKDTQKIKWNHNPEHLTAWQTGQTGIPIVDAGMRQLLQTGWMHNRVRMI 361 Query: 357 TASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGK 416 TA FL K+LL+DWRIGE++FM L+DGDLA+NNGGWQW ASTG D+VPYFRIFNP Q K Sbjct: 362 TAMFLCKNLLIDWRIGEQWFMQHLIDGDLAANNGGWQWCASTGTDAVPYFRIFNPIAQSK 421 Query: 417 RFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKA 466 +FDP+G +IR W+ EL ++ + IH P+S K DL LNYP PIVD K+ Sbjct: 422 KFDPEGEYIRQWIKELTHLDNKTIHDPYS--SKTDLGLNYPKPIVDLKET 469 >gi|311106052|ref|YP_003978905.1| deoxyribodipyrimidine photo-lyase [Achromobacter xylosoxidans A8] gi|310760741|gb|ADP16190.1| deoxyribodipyrimidine photo-lyase [Achromobacter xylosoxidans A8] Length = 472 Score = 355 bits (912), Expect = 7e-96, Method: Compositional matrix adjust. Identities = 197/468 (42%), Positives = 276/468 (58%), Gaps = 9/468 (1%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 L+WLR DLR DN AL AA V A+F+A P QWR HG + + F +L ++ + Sbjct: 4 LLWLRTDLRAHDNPALAAAAEAG--TVTALFLAAPGQWRLHGDAPTKVDFWLRNLRELSR 61 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130 L + GI + ++ ++ + L +C + ++ N ++ +NE RRD + RLQ Sbjct: 62 ELGRLGIPLRLLTVPDWSNAPDALADFCRTHAIGQVHANAEWAVNERRRDAAVAARLQAL 121 Query: 131 VICKSFD-DSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189 + + + LL PG++L + Y+VYTP+ +A + L A LR+LP P + P Sbjct: 122 GVDWTLHHGASLLRPGTVLTGKGECYRVYTPYARACRERLRTAPLRALPAPRAQTPPPWP 181 Query: 190 PSNIP---RFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246 +P F+ P + ++P GE A L F + Y EQRD P++ TS LS Sbjct: 182 ADPLPAAFEGFEAPADPVRALWPAGEDAASERLEAFADGVIDAYQEQRDFPSLPATSCLS 241 Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP 306 PYL+ GVLSP Q + K GA +W+NEL+WREFY+HL+A +PS+ M +P Sbjct: 242 PYLAAGVLSPGQALRAALAANHGEVDGGKRGAATWINELLWREFYQHLLAAHPSLSMHQP 301 Query: 307 FIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLL 366 P T + W L+AW+QG TG PI+DAAMRQL +GWMHNRLRM+TA FL K+LL Sbjct: 302 MKPETAAVPWRDAPDDLRAWQQGQTGIPIVDAAMRQLLALGWMHNRLRMVTAMFLSKNLL 361 Query: 367 VDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIR 426 +DWR+GE +FM+QL+DGDLA+NNGGWQW+ASTG D+VPYFRIFNP Q ++FDP G F+R Sbjct: 362 IDWRLGEAWFMAQLVDGDLAANNGGWQWSASTGADAVPYFRIFNPLSQSRKFDPDGVFLR 421 Query: 427 HWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQY 474 WLPEL ++ ++ IH P YPL IVD ++ L + Sbjct: 422 EWLPELAHLDSRAIHDPSP---MERAQAGYPLAIVDLAQSRLRALEAF 466 >gi|260556618|ref|ZP_05828836.1| deoxyribodipyrimidine photolyase FAD-binding [Acinetobacter baumannii ATCC 19606] gi|260409877|gb|EEX03177.1| deoxyribodipyrimidine photolyase FAD-binding [Acinetobacter baumannii ATCC 19606] Length = 480 Score = 355 bits (911), Expect = 9e-96, Method: Compositional matrix adjust. Identities = 196/470 (41%), Positives = 275/470 (58%), Gaps = 15/470 (3%) Query: 8 SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67 + L+W R DLRI D+ AL+ A + + + I +PEQW+QH + + F L Sbjct: 4 AYQLIWFRQDLRIHDHAALWHASQQGPS--LGLVILSPEQWKQHADAPIKIGFYLRQLRT 61 Query: 68 VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127 +QK L+ I + + ++ + + + ++ N + +NE++RDK ++ L Sbjct: 62 LQKELAALHIPLVIQVIPYWKEIANFISDFSKKYNIENVYANIEIGVNELKRDKTVQDYL 121 Query: 128 -QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADL-RSLPVPAIRLT 185 +H F D + P SI N + Q Y+V++ F+KA L + L + PVP + Sbjct: 122 NRHGKELFLFHDRTIFPLRSIRNQSQQPYQVFSAFKKACYTKLDTSGLPQCYPVPNKQNE 181 Query: 186 GP--------VTPSNIPRFFDYPF-QAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDI 236 P + I + F + ++P+GEQ AL L +F +E V +Y +RD Sbjct: 182 VPLDFLQGKNIDLDEIEKLFCPSLSKEQQDLWPVGEQYALEQLDQFIEESVCHYKLERDF 241 Query: 237 PAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMA 296 P IQGTS+LSPYL+IG+LS RQC L G WL+EL+WREFY+H++ Sbjct: 242 PHIQGTSKLSPYLNIGILSIRQCLQALFRNQHGNFHLVNEGQQIWLDELLWREFYQHILF 301 Query: 297 FYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMI 356 +P V PF T+KI+WN + L AW+ G TG PI+DA MRQL GWMHNR+RMI Sbjct: 302 DFPHVSKHIPFKKDTQKIKWNHNPEHLTAWQTGQTGIPIVDAGMRQLLQTGWMHNRIRMI 361 Query: 357 TASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGK 416 TA FL K+LL+DWRIGE++FM L+DGDLA+NNGGWQW ASTG D+VPYFRIFNP Q K Sbjct: 362 TAMFLCKNLLIDWRIGEQWFMQHLIDGDLAANNGGWQWCASTGTDAVPYFRIFNPIAQSK 421 Query: 417 RFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKA 466 +FDP+G +IR W+ EL ++ + IH P+S K DL LNYP PIVD K+ Sbjct: 422 KFDPEGEYIRQWVKELAHLDNKTIHEPYS--SKTDLGLNYPKPIVDLKET 469 >gi|293609792|ref|ZP_06692094.1| deoxyribodipyrimidine photolyase [Acinetobacter sp. SH024] gi|292828244|gb|EFF86607.1| deoxyribodipyrimidine photolyase [Acinetobacter sp. SH024] Length = 480 Score = 354 bits (908), Expect = 2e-95, Method: Compositional matrix adjust. Identities = 196/468 (41%), Positives = 274/468 (58%), Gaps = 15/468 (3%) Query: 10 HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69 L+W R DLR+ D+ AL+ A + I + I +PEQW+ H + + +F L Q++ Sbjct: 6 QLIWFRQDLRVRDHAALWHA--SQQGPCIGLIILSPEQWKMHHDAPIKINFYLRQLQQLK 63 Query: 70 KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL-Q 128 K L Q I + D +++ Q + ++ N + +NE++RDK ++ L Q Sbjct: 64 KELEQLNIPLIIQVIPYWKDIADYIGELSTQLNIENVYSNIEIGVNELKRDKTVQDFLNQ 123 Query: 129 HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADL-RSLPVPAIRLTGP 187 F D + P SI N + Q Y+V+ F+KA L + L + P+P + + P Sbjct: 124 QGKELFLFHDRTIFPLCSIRNQSQQPYQVFGAFKKACYSKLDISGLPQCYPIPEKQSSYP 183 Query: 188 --------VTPSNIPRFFDYPF-QAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPA 238 +T +I FFD + ++P GE AL L F K+++ Y +RD P Sbjct: 184 ASFSKINSLTLEDIEAFFDPSVSKEQQGLWPAGENFALEQLDIFIKDRLSDYKLERDFPN 243 Query: 239 IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFY 298 ++GTSQLSPYL+IG+LS RQC L G +WL+ELIWREFY+H++ + Sbjct: 244 VRGTSQLSPYLNIGILSIRQCLQALFRAEHGNFHLTNEGQQTWLDELIWREFYQHILFDF 303 Query: 299 PSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITA 358 P V PF T+KI+WN + L AW+ G TG PIIDA MRQL GWMHNR+RMITA Sbjct: 304 PHVSKHIPFKKDTQKIKWNHNPEHLIAWQTGQTGIPIIDAGMRQLLKTGWMHNRVRMITA 363 Query: 359 SFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRF 418 FL K+LL+DWR+GE++FM L+DGDLA+NNGGWQW ASTG D+VPYFRIFNP Q K+F Sbjct: 364 MFLCKNLLIDWRVGEQWFMEHLIDGDLAANNGGWQWCASTGTDAVPYFRIFNPIAQSKKF 423 Query: 419 DPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKA 466 DP G +IR W+ EL ++ + IH P+S K ++ LNYP PIVD K+ Sbjct: 424 DPNGDYIRQWVEELAHLDNKAIHEPYS--TKTNIQLNYPKPIVDLKET 469 >gi|312958863|ref|ZP_07773382.1| DNA photolyase, FAD-binding [Pseudomonas fluorescens WH6] gi|311286633|gb|EFQ65195.1| DNA photolyase, FAD-binding [Pseudomonas fluorescens WH6] Length = 480 Score = 353 bits (907), Expect = 2e-95, Method: Compositional matrix adjust. Identities = 186/470 (39%), Positives = 265/470 (56%), Gaps = 7/470 (1%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 +HL+WLR DLR+ DN AL AA V AV++ TPEQWR H + + F +L ++ Sbjct: 1 MHLIWLRTDLRLHDNTALAAASQR--GPVAAVYLITPEQWRAHDDAPCKVDFWLRNLQRL 58 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128 +L + I + + + C + V + N +Y I+E RRD + ++L+ Sbjct: 59 SLALGELNIPLLIRSAATWQQVPAVVSELCRELSVKSVHVNEEYGIHENRRDAAVAQQLE 118 Query: 129 H-RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187 V + D +L PGS+L ++V++ FRK L A R + P + Sbjct: 119 ACGVTFHRYLDQLLFQPGSVLTKTGTYFQVFSQFRKVCYSRLHSALPRIVATPKAQQKLA 178 Query: 188 VTPSNIPRF---FDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244 +P+ F+ P + ++P GE A L F ++++ YY ++RD PA GTSQ Sbjct: 179 FNSDPVPQTVDGFEPPSDCLRALWPAGEDEARRRLDAFAEQQISYYKDERDFPAKPGTSQ 238 Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304 LS YL+ GV+SPRQC + + G +W+NEL+WREFY+H++ YP V Sbjct: 239 LSAYLAAGVVSPRQCLHAALQSNQGEFESGDIGTITWINELLWREFYKHILVGYPRVSRH 298 Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364 + F P TE + W L AW++ TG PIIDAAMRQL GWMHNRLRM+ A FL K+ Sbjct: 299 RAFRPETEAVAWRHAPKDLAAWQEARTGLPIIDAAMRQLLETGWMHNRLRMVVAMFLTKN 358 Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424 LL+DWR GE +FM L+DGDLA+NNGGWQW++STG DS PYFRIF+P Q ++FD G F Sbjct: 359 LLIDWREGERFFMRHLIDGDLAANNGGWQWSSSTGTDSAPYFRIFSPLSQSEKFDSDGVF 418 Query: 425 IRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQY 474 I+HWLPEL + + +H P + ++ +YP IVD KK+ L + Sbjct: 419 IKHWLPELAALNKKDVHNPEAVGGLFGMA-DYPRAIVDLKKSRERALAAF 467 >gi|332529962|ref|ZP_08405912.1| deoxyribodipyrimidine photolyase [Hylemonella gracilis ATCC 19624] gi|332040435|gb|EGI76811.1| deoxyribodipyrimidine photolyase [Hylemonella gracilis ATCC 19624] Length = 501 Score = 353 bits (907), Expect = 3e-95, Method: Compositional matrix adjust. Identities = 194/459 (42%), Positives = 265/459 (57%), Gaps = 13/459 (2%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 LVWLRNDLR+ DN AL+AA VIAV++ + I+ + F L + Sbjct: 4 LVWLRNDLRLHDNPALHAAAELRQG-VIAVYVHCDAYVTRFPIAPSRLDFARRHLHLLTT 62 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130 L++ I Q + + + L ++ F+N +Y ++E+ RD+ + + L+ + Sbjct: 63 ELARHHIALQVLRVAQVSEIAPALARLARDHGISHCFFNAEYPLDELNRDQQVNQLLRAQ 122 Query: 131 -VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189 V K D V++PPG + N A YKV+TP+++ +Q LR + PA + P Sbjct: 123 GVTVKRCHDRVVIPPGKVRNEAGTPYKVFTPYKRKWLQLASLLPLRPVEAPAHQAALPC- 181 Query: 190 PSNIPRFFDYPFQA-----IDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244 PS + D+ F+ + +P GE A L++F + + +Y QRD+PA+ GTS Sbjct: 182 PSASAQDIDHLFEGQELRDLSTPWPAGEAVARARLQRFVAQDLDHYQTQRDLPAVAGTSG 241 Query: 245 LSPYLSIGVLSPRQCWNR-LKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCM 303 LSPYL+IG LSPRQ L D +G +W++ELIWREFY+HL+ YP VCM Sbjct: 242 LSPYLAIGALSPRQALAAVLSRTGGDW--NANAGVSTWISELIWREFYQHLVVDYPQVCM 299 Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363 + TE W + W+QG TG PIIDAAMRQLN GWMHNRLRM+ A FL K Sbjct: 300 HRAMQVHTEAFPWRQAPEDFALWRQGRTGIPIIDAAMRQLNATGWMHNRLRMLVAMFLTK 359 Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423 +L +DWR GE YFM QL+DGD A+NNGGWQW+ASTG D+ PYFRIFNP Q +RFDP+G Sbjct: 360 NLQIDWRWGERYFMEQLIDGDFAANNGGWQWSASTGTDAAPYFRIFNPITQSQRFDPRGQ 419 Query: 424 FIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVD 462 FIR W+PEL + + IHAPH L + YP P+VD Sbjct: 420 FIRLWVPELAGLSDKAIHAPH--LAPSGPPPGYPAPMVD 456 >gi|93005295|ref|YP_579732.1| deoxyribodipyrimidine photolyase [Psychrobacter cryohalolentis K5] gi|92392973|gb|ABE74248.1| Deoxyribodipyrimidine photo-lyase type I [Psychrobacter cryohalolentis K5] Length = 541 Score = 353 bits (905), Expect = 5e-95, Method: Compositional matrix adjust. Identities = 204/507 (40%), Positives = 278/507 (54%), Gaps = 50/507 (9%) Query: 10 HLVWLRNDLRITDNKALYAACHNSD---AKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 +L+W R DLR+ DN AL A C ++ A++ AVF TPEQW+ H +S Q I +L Sbjct: 24 YLMWFRRDLRVHDNTALAAICERANEDNAQLSAVFFLTPEQWQAHDMSLTQLDHIARTLP 83 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 + + L Q I+ C +F D I L + C ++ + N +YE NEV RD+LL K+ Sbjct: 84 ILAEKLHQLNIILTVQVCPSFTDCIVTLSALCESNNISCVMANHEYEGNEVARDELLTKQ 143 Query: 127 LQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAI--- 182 L + I + D +LPP SI + MY+V+TPF K L +D++ AI Sbjct: 144 LANNEIEFIRWHDQCILPPKSITTNDDSMYQVFTPFYKKWRHTLEVSDIQIHTALAIIDN 203 Query: 183 ---RLTGPVTPSNIPR---------FFDY--------PFQAIDP---------MFPIGEQ 213 LT +N + DY +Q ID +P GE Sbjct: 204 KQVNLTLSEHSANTTQDIEALCKKTVHDYQEYLQTHESYQNIDTDKQISQARLAYPAGEA 263 Query: 214 NALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCW-------NRLKEE 266 A H L F + + Y RD+P++Q TSQLS YL+IG +SPR C+ +L+ Sbjct: 264 EACHRLEHFIADDIDNYDVSRDVPSLQATSQLSTYLTIGAISPRLCYLQATQALGKLRRN 323 Query: 267 FVDLLIKPKSGAFS-WLNELIWREFYRHLMAFYPSVCMGKPFIPWTEK-IEWNKDSHLLQ 324 D + + W++EL WR+FYRH++ + P + + + T+K I W+ D Sbjct: 324 DGDNFDSGDNNDINRWISELAWRDFYRHVLDYKPELIRHQAYKYETDKKINWSYDEDAFA 383 Query: 325 AWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGD 384 AW++G TG P++DAAMR LN G+MHNRLRM+TA FL KDLL+DWR GE YFM QL+DGD Sbjct: 384 AWREGKTGVPLVDAAMRCLNATGFMHNRLRMVTAMFLTKDLLIDWRWGERYFMQQLIDGD 443 Query: 385 LASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPH 444 ASNNGGWQW+ASTG DS PYFRI NP Q K D +G FI+ WLPEL +PT +H Sbjct: 444 FASNNGGWQWSASTGTDSAPYFRIMNPFSQAKSHDTEGIFIKTWLPELKPIPTSILHRED 503 Query: 445 SW---LDKNDL--SLNYPLPIVDHKKA 466 L KN ++YP+PIV+HK A Sbjct: 504 KMRKALSKNGTFADIDYPVPIVEHKLA 530 >gi|126665160|ref|ZP_01736143.1| Deoxyribodipyrimidine photolyase [Marinobacter sp. ELB17] gi|126630530|gb|EBA01145.1| Deoxyribodipyrimidine photolyase [Marinobacter sp. ELB17] Length = 488 Score = 353 bits (905), Expect = 5e-95, Method: Compositional matrix adjust. Identities = 199/488 (40%), Positives = 273/488 (55%), Gaps = 24/488 (4%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAK----VIAVFIATPEQWRQHGISARQSHFIYAS 64 LVW RNDLR DN AL AAC ++ V A FI T EQW H SA + H + Sbjct: 2 TQLVWFRNDLRAADNPALAAACQSAAQSSGEPVEACFIVTTEQWLSHDWSAAKVHLMLDH 61 Query: 65 LLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLE 124 + + L++ GI + + ++F+ S+ L+++C +++++ +N +Y +NE RRDK L+ Sbjct: 62 ADALAQELAKLGIALSFLRAADFEQSLSTLEAFCRDHKISQVHFNEEYGVNERRRDKALK 121 Query: 125 KRLQH-RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALI--QNLVQADLRSLPVPA 181 R V + D +P G +L + Y V+TPF + Q Q L ++P Sbjct: 122 PRFDTLGVKVSKYRDQAAVPVGEVLTQQSEPYSVFTPFSRRWRSWQEEQQPALLAVPKKV 181 Query: 182 IRLTGPVTPSN-----IPRFFDYPFQAIDPMFPIGEQNALH-ILRKFCKEKVYYYVEQRD 235 N + + D F P +NA H L+ F +E+ Y RD Sbjct: 182 GEALAGADVKNSSSVILKKEVDALFGEAPPALVATGENAAHDALQDFLQERAGDYKNDRD 241 Query: 236 IPAIQGTSQLSPYLSIGVLSPRQC----WNRLKEEFVDLLIKP---KSGAFSWLNELIWR 288 PAI+GTS+LSPYL+IG LS RQC W +LK+ K + G F+W EL WR Sbjct: 242 FPAIEGTSKLSPYLAIGALSGRQCVQAAW-QLKQSMGSSFGKAANDEEGFFTWETELAWR 300 Query: 289 EFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGW 348 +FY H++ P V M + F P TE ++WN +AWK G TG P++DAAMRQLN W Sbjct: 301 DFYIHILYHCPRVSMHRAFKPETEALQWNTADEHFEAWKNGRTGIPMVDAAMRQLNETSW 360 Query: 349 MHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRI 408 MHNRLRM+ A FL K+L +DWR GE YFMS+L DG LASNNGGWQW+ASTG D+ PYFR+ Sbjct: 361 MHNRLRMVAAMFLTKNLFIDWRRGEAYFMSKLADGYLASNNGGWQWSASTGTDASPYFRV 420 Query: 409 FNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACH 468 FNP QG+RFD G FIRHW+PEL + ++ IH P + YP PIVD K++ Sbjct: 421 FNPMTQGERFDADGEFIRHWVPELAKLDSKRIHNPGK---GGVIPGGYPRPIVDLKESRK 477 Query: 469 HTLNQYYA 476 + ++ A Sbjct: 478 EAIARFQA 485 >gi|169795130|ref|YP_001712923.1| deoxyribodipyrimidine photolyase (photoreactivation), FAD-binding [Acinetobacter baumannii AYE] gi|169148057|emb|CAM85920.1| deoxyribodipyrimidine photolyase (photoreactivation), FAD-binding [Acinetobacter baumannii AYE] Length = 498 Score = 352 bits (903), Expect = 8e-95, Method: Compositional matrix adjust. Identities = 196/475 (41%), Positives = 277/475 (58%), Gaps = 17/475 (3%) Query: 5 TAMS--VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIY 62 T MS L+W R DLRI D+ AL+ A + + + I +PEQW+QH + + F Sbjct: 17 TCMSNAYQLIWFRQDLRIHDHAALWHASQQGPS--LGLVILSPEQWKQHADAPIKISFYL 74 Query: 63 ASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKL 122 L +QK LS I + + ++ + + + ++ N + +NE++RDK Sbjct: 75 RQLRTLQKELSALHIPLVIQVIPYWKEIATFISDFSKKYNIENVYANIEIGVNELKRDKT 134 Query: 123 LEKRL-QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADL-RSLPVP 180 ++ L +H F D + P SI N + Q Y+V++ F+KA L + L + PVP Sbjct: 135 VQDYLNRHGKELFLFHDRTIFPLRSIRNQSQQPYQVFSAFKKACYTKLDTSGLPQCYPVP 194 Query: 181 AIRLTGP--------VTPSNIPRFFDYPF-QAIDPMFPIGEQNALHILRKFCKEKVYYYV 231 + P + I + F + ++P+GEQ AL L +F ++ V +Y Sbjct: 195 NKQNEVPLDFLQGKNIDLDEIEKLFCSSLSKEQQDLWPVGEQYALEQLDQFIEQSVCHYK 254 Query: 232 EQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFY 291 +RD P IQ TS+LSPYL+IG+LS RQC L G +WL+EL+WREFY Sbjct: 255 VERDFPHIQATSKLSPYLNIGILSIRQCLQALFRNQHGNFHLVNEGQQTWLDELLWREFY 314 Query: 292 RHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHN 351 +H++ +P V PF ++KI+WN + L AW+ G TG PI+DA MRQL GWMHN Sbjct: 315 QHILFDFPHVSKHIPFKKDSQKIKWNHNPEHLTAWQTGQTGIPIVDAGMRQLLQTGWMHN 374 Query: 352 RLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNP 411 R+RMITA FL K+LL+DWRIGE++FM L+DGDLA+NNGGWQW ASTG D+VPYFRIFNP Sbjct: 375 RVRMITAMFLCKNLLIDWRIGEQWFMQHLIDGDLAANNGGWQWCASTGTDAVPYFRIFNP 434 Query: 412 TIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKA 466 Q K+FDP+G +IR W+ EL ++ + IH P+S K+DL LNY PIVD K+ Sbjct: 435 IAQSKKFDPEGEYIRQWIKELAHLDNKTIHEPYS--SKSDLGLNYSKPIVDLKET 487 >gi|301345220|ref|ZP_07225961.1| deoxyribodipyrimidine photo-lyase [Acinetobacter baumannii AB056] gi|301596996|ref|ZP_07242004.1| deoxyribodipyrimidine photo-lyase [Acinetobacter baumannii AB059] Length = 480 Score = 352 bits (903), Expect = 9e-95, Method: Compositional matrix adjust. Identities = 193/467 (41%), Positives = 274/467 (58%), Gaps = 15/467 (3%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 L+W R DLRI D+ AL+ A + + + I +PEQW+QH + + F L +QK Sbjct: 7 LIWFRQDLRIHDHAALWHASQQGPS--LGLVILSPEQWKQHADAPIKISFYLRQLRTLQK 64 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL-QH 129 LS I + + ++ + + + ++ N + +NE++RDK ++ L +H Sbjct: 65 ELSALHIPLVIQVIPYWKEIATFISDFSKKYNIENVYANIEIGVNELKRDKTVQDYLNRH 124 Query: 130 RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADL-RSLPVPAIRLTGP- 187 F D + P SI N + Q Y+V++ F+KA L + L + PVP + P Sbjct: 125 GKELFLFHDRTIFPLRSIRNQSQQPYQVFSAFKKACYTKLDTSGLSQCYPVPNKQNEVPL 184 Query: 188 -------VTPSNIPRFFDYPF-QAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAI 239 + I + F + ++P+GEQ AL L +F ++ V +Y +RD P I Sbjct: 185 DFLQGKNIDLDEIEKLFCSSLSKEQQDLWPVGEQYALEQLDQFIEQSVCHYKVERDFPHI 244 Query: 240 QGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYP 299 Q TS+LSPYL+IG+LS RQC L G +WL+EL+WREFY+H++ +P Sbjct: 245 QATSKLSPYLNIGILSIRQCLQALFRNQHGNFHLVNEGQQTWLDELLWREFYQHILFDFP 304 Query: 300 SVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITAS 359 V PF ++KI+WN + L AW+ G TG PI+DA MRQL GWMHNR+RMITA Sbjct: 305 HVSKHIPFKKDSQKIKWNHNPEHLTAWQTGQTGIPIVDAGMRQLLQTGWMHNRVRMITAM 364 Query: 360 FLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFD 419 FL K+LL+DWRIGE++FM L+DGDLA+NNGGWQW ASTG D+VPYFRIFNP Q K+FD Sbjct: 365 FLCKNLLIDWRIGEQWFMQHLIDGDLAANNGGWQWCASTGTDAVPYFRIFNPIAQSKKFD 424 Query: 420 PQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKA 466 P+G +IR W+ EL ++ + IH P+S K+DL LNY PIVD K+ Sbjct: 425 PEGEYIRQWIKELAHLDNKTIHEPYS--SKSDLGLNYSKPIVDLKET 469 >gi|325123018|gb|ADY82541.1| deoxyribodipyrimidine photolyase (photoreactivation), FAD-binding protein [Acinetobacter calcoaceticus PHEA-2] Length = 480 Score = 352 bits (902), Expect = 1e-94, Method: Compositional matrix adjust. Identities = 193/468 (41%), Positives = 275/468 (58%), Gaps = 15/468 (3%) Query: 10 HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69 L+W R DLR+ D+ AL+ A + I + I +PEQW+ H + + +F L Q++ Sbjct: 6 QLIWFRQDLRVRDHAALWHA--SQQGPCIGLIILSPEQWQTHHDAPIKINFYLRQLQQLK 63 Query: 70 KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL-Q 128 K L Q I + D +++ +Q + ++ N ++ +NE++RDK ++ L Q Sbjct: 64 KELEQLNIPLIIQVIPYWKDIADYIGELSIQLNIENVYSNIEFGVNELKRDKTVQDFLNQ 123 Query: 129 HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADL-RSLPVPAIRLTGP 187 F D + P SI N + Q Y+V+ F+KA L + L + P+P + + P Sbjct: 124 QGKELFLFHDRTIFPLCSIRNQSQQPYQVFGAFKKACYSKLDISGLPQCYPIPEKQSSYP 183 Query: 188 --------VTPSNIPRFFDYPF-QAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPA 238 +T +I FFD + ++P GE AL L F K+ + Y +RD P Sbjct: 184 ASFSKINSLTLEDIEAFFDPSVSKEQQGLWPAGENFALEQLDIFIKDHLSDYKLERDFPN 243 Query: 239 IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFY 298 ++GTSQLSPYL+IG+LS RQC L G +WL+EL+WREFY+H++ + Sbjct: 244 VRGTSQLSPYLNIGILSIRQCLQALFRAEHGNFHLTNEGQQTWLDELLWREFYQHILFDF 303 Query: 299 PSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITA 358 P V PF T+KI+W+ + L AW+ G TG PIIDA MRQL GWMHNR+RMITA Sbjct: 304 PHVSKHIPFKKNTQKIKWSHNPEHLTAWQTGQTGIPIIDAGMRQLLKTGWMHNRVRMITA 363 Query: 359 SFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRF 418 FL K++L+DWR+GE++FM L+DGDLA+NNGGWQW ASTG D+VPYFRIFNP Q K+F Sbjct: 364 MFLCKNMLIDWRVGEQWFMEHLIDGDLAANNGGWQWCASTGTDAVPYFRIFNPIAQSKKF 423 Query: 419 DPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKA 466 DP G +IR W+ EL ++ + IH P+S K ++ LNYP PIVD K+ Sbjct: 424 DPNGDYIRQWVQELAHLDNKAIHEPYS--TKTNIQLNYPKPIVDLKET 469 >gi|215482677|ref|YP_002324873.1| Deoxyribodipyrimidine photo-lyase [Acinetobacter baumannii AB307-0294] gi|301511002|ref|ZP_07236239.1| deoxyribodipyrimidine photo-lyase [Acinetobacter baumannii AB058] gi|213987651|gb|ACJ57950.1| Deoxyribodipyrimidine photo-lyase [Acinetobacter baumannii AB307-0294] Length = 480 Score = 352 bits (902), Expect = 1e-94, Method: Compositional matrix adjust. Identities = 193/470 (41%), Positives = 275/470 (58%), Gaps = 15/470 (3%) Query: 8 SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67 + L+W R DLRI D+ AL+ A + + + I +PEQW+QH + + F L Sbjct: 4 AYQLIWFRQDLRIHDHAALWHASQQGPS--LGLVILSPEQWKQHADAPIKISFYLRQLRT 61 Query: 68 VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127 +QK LS I + + ++ + + + ++ N + +NE++RDK ++ L Sbjct: 62 LQKELSALHIPLVIQVIPYWKEIATFISDFSKKYNIENVYANIEIGVNELKRDKTVQDYL 121 Query: 128 -QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADL-RSLPVPAIRLT 185 +H F D + P SI N + Q Y+V++ F+KA L + L + PVP + Sbjct: 122 NRHGKELFLFHDRTIFPLRSIRNQSQQPYQVFSAFKKACYTKLDTSGLPQCYPVPNKQNE 181 Query: 186 GP--------VTPSNIPRFFDYPF-QAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDI 236 P + I + F + ++P+GEQ AL L +F ++ V +Y +RD Sbjct: 182 VPLDFLQGKNIDLDEIEKLFCSSLSKEQQDLWPVGEQYALEQLDQFIEQSVCHYKVERDF 241 Query: 237 PAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMA 296 P IQ TS+LSPYL+IG+LS RQC L G +WL+EL+WREFY+H++ Sbjct: 242 PHIQATSKLSPYLNIGILSIRQCLQALFRNQHGNFHLVNEGQQTWLDELLWREFYQHILF 301 Query: 297 FYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMI 356 +P V PF ++KI+WN + L AW+ G TG PI+DA MRQL GWMHNR+RMI Sbjct: 302 DFPHVSKHIPFKKDSQKIKWNHNPEHLTAWQTGQTGIPIVDAGMRQLLQTGWMHNRVRMI 361 Query: 357 TASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGK 416 TA FL K+LL+DWRIGE++FM L+DGDLA+NNGGWQW ASTG D+VPYFRIFNP Q K Sbjct: 362 TAMFLCKNLLIDWRIGEQWFMQHLIDGDLAANNGGWQWCASTGTDAVPYFRIFNPIAQSK 421 Query: 417 RFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKA 466 +FDP+G +IR W+ EL ++ + IH P+S K+DL LNY PIVD K+ Sbjct: 422 KFDPEGEYIRQWIKELAHLDNKTIHEPYS--SKSDLGLNYSKPIVDLKET 469 >gi|226326776|ref|ZP_03802294.1| hypothetical protein PROPEN_00636 [Proteus penneri ATCC 35198] gi|225204613|gb|EEG86967.1| hypothetical protein PROPEN_00636 [Proteus penneri ATCC 35198] Length = 256 Score = 350 bits (899), Expect = 2e-94, Method: Compositional matrix adjust. Identities = 164/251 (65%), Positives = 190/251 (75%) Query: 229 YYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWR 288 +Y + RDIPA+ GTS+LSPYLSIG+LS RQC+NRL + + L SGAF W NELIWR Sbjct: 3 HYAKWRDIPAVDGTSRLSPYLSIGLLSIRQCFNRLYQTEPNFLENNTSGAFVWFNELIWR 62 Query: 289 EFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGW 348 EFY+HL+ P++C F WTEKI W + AW QG TGFPIIDAAMRQLN GW Sbjct: 63 EFYQHLIVANPNLCKHIAFQLWTEKINWRNNQDEFNAWTQGSTGFPIIDAAMRQLNQTGW 122 Query: 349 MHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRI 408 MHNRLRM+TASFL+KDLL+DWR GE YFMSQL+DGD ASNNGGWQWAASTG D+VPYFRI Sbjct: 123 MHNRLRMLTASFLIKDLLIDWRWGERYFMSQLIDGDFASNNGGWQWAASTGTDAVPYFRI 182 Query: 409 FNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACH 468 FNPT QG++FDP G FIRHWLPEL +VP++YIH PH W K + L+YPLPIVDH KA Sbjct: 183 FNPTTQGRKFDPDGEFIRHWLPELASVPSRYIHTPHEWAAKTNNPLDYPLPIVDHAKARI 242 Query: 469 HTLNQYYAAKK 479 + Y KK Sbjct: 243 RAIESYEKDKK 253 >gi|330811712|ref|YP_004356174.1| Deoxyribodipyrimidine photo-lyase [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327379820|gb|AEA71170.1| Deoxyribodipyrimidine photo-lyase [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 483 Score = 348 bits (894), Expect = 9e-94, Method: Compositional matrix adjust. Identities = 190/472 (40%), Positives = 275/472 (58%), Gaps = 11/472 (2%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 + L+WLR+DLR+ DN AL AA + +AV++ +PEQWR H + + F +L + Sbjct: 1 MQLIWLRSDLRLHDNTALAAA--AAQGPCVAVYLTSPEQWRAHDDAPCKIDFWLRNLGAL 58 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128 +L++ I +++ + + L C + V + N +Y +NE RRD + + L Sbjct: 59 SATLAELNIPLLIRAAAHWHQAPQVLLKLCRELNVGAVHVNEEYGLNETRRDAEVARVLN 118 Query: 129 HR-VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187 + V S D +L PGS+L ++V++ FRK L + + PA + Sbjct: 119 DQGVEFHSHLDQLLFKPGSVLTKTGNYFQVFSQFRKVCYSRLHFSLPSLVATPARQALTG 178 Query: 188 VTPSNIPRFFDY---PFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244 + +P D P +A+ ++P GE A L F + + Y +RD PA GTSQ Sbjct: 179 IARDPVPTQVDGFAPPSEALRALWPAGETEARRRLDTFVDQHIDDYQGERDYPARPGTSQ 238 Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304 LS YL GV+SPRQC + + +GA +W+NEL+WREFY+H++ YP V Sbjct: 239 LSAYLVAGVVSPRQCLHAALQANQGEFESGSAGAVTWINELLWREFYKHILVGYPRVSRH 298 Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364 + F P TE + W K L+AWKQ TG PIIDAAMRQL GWMHNRLRM+ A FL K+ Sbjct: 299 RAFRPETEALAWRKAPAELEAWKQARTGLPIIDAAMRQLLETGWMHNRLRMVVAMFLTKN 358 Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424 LL+DWR GE +FM L+DGDLA+NNGGWQW+ASTG DS P+FRIFNP Q ++FD +G F Sbjct: 359 LLIDWREGERFFMQHLIDGDLAANNGGWQWSASTGTDSAPWFRIFNPLSQSEKFDREGLF 418 Query: 425 IRHWLPELNNVPTQYIHAPHSWLDKNDL--SLNYPLPIVDHKKACHHTLNQY 474 I+ WLPELN++ Q +H+P++ + L +++YP PIVD +++ L + Sbjct: 419 IKRWLPELNDLDKQQVHSPNT---QGGLFGAVDYPAPIVDLRQSRARALAAF 467 >gi|332853990|ref|ZP_08435106.1| deoxyribodipyrimidine photo-lyase [Acinetobacter baumannii 6013150] gi|332869730|ref|ZP_08438918.1| deoxyribodipyrimidine photo-lyase [Acinetobacter baumannii 6013113] gi|332728272|gb|EGJ59654.1| deoxyribodipyrimidine photo-lyase [Acinetobacter baumannii 6013150] gi|332732632|gb|EGJ63865.1| deoxyribodipyrimidine photo-lyase [Acinetobacter baumannii 6013113] Length = 480 Score = 348 bits (893), Expect = 1e-93, Method: Compositional matrix adjust. Identities = 192/470 (40%), Positives = 274/470 (58%), Gaps = 15/470 (3%) Query: 8 SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67 + L+W R DLRI D+ AL+ A + + + I +PEQW+QH + + F L Sbjct: 4 AYQLIWFRQDLRIHDHAALWHASQQGPS--LGLVILSPEQWKQHADAPIKISFYLRQLRT 61 Query: 68 VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127 +QK LS I + + ++ + + + ++ N + +NE++RDK ++ L Sbjct: 62 LQKELSALHIPLVIQVIPYWKEIATFISDFSKKYNIENVYANIEIGVNELKRDKTVQDYL 121 Query: 128 -QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADL-RSLPVPAIRLT 185 +H F D + P SI N + Q Y+V++ F+KA L + L + PVP + Sbjct: 122 NRHGKELFLFHDRTIFPLRSIRNQSQQPYQVFSAFKKACYTKLDTSGLPQCYPVPNKQNE 181 Query: 186 GP--------VTPSNIPRFFDYPF-QAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDI 236 P + I + F + ++P+GEQ AL L +F ++ V +Y +RD Sbjct: 182 VPLDFLQGKNIDLDEIEKLFCSSLSKEQQDLWPVGEQYALEQLDQFIEQSVCHYKVERDF 241 Query: 237 PAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMA 296 P IQ TS+LSPYL+IG+LS RQC L G +WL+EL+WREFY+H++ Sbjct: 242 PHIQATSKLSPYLNIGILSIRQCLQALFRNQHGNFHLVNEGQQTWLDELLWREFYQHILF 301 Query: 297 FYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMI 356 +P V PF ++KI+WN + L AW+ G TG PI+DA MRQL GWMHNR+RMI Sbjct: 302 DFPHVSKHIPFKKDSQKIKWNHNPEHLTAWQTGQTGIPIVDAGMRQLLQTGWMHNRVRMI 361 Query: 357 TASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGK 416 TA FL K+LL+DWRIGE++FM L+DGDLA+NNGGWQW ASTG D+VPYFRIFNP Q K Sbjct: 362 TAMFLCKNLLIDWRIGEQWFMQHLIDGDLAANNGGWQWCASTGTDAVPYFRIFNPIAQSK 421 Query: 417 RFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKA 466 +FD +G +IR W+ EL ++ + IH P+S K+DL LNY PIVD K+ Sbjct: 422 KFDLEGEYIRQWIKELAHLDNKTIHEPYS--SKSDLGLNYSKPIVDLKET 469 >gi|110833627|ref|YP_692486.1| DNA photolyase [Alcanivorax borkumensis SK2] gi|110646738|emb|CAL16214.1| DNA photolyase [Alcanivorax borkumensis SK2] Length = 484 Score = 347 bits (890), Expect = 2e-93, Method: Compositional matrix adjust. Identities = 186/485 (38%), Positives = 273/485 (56%), Gaps = 19/485 (3%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSD-------AKVIAVFIATPEQWRQHGISARQSHFI 61 ++LVW RNDLR+ + L+AA S + +AV+ QW +H ++ + ++ Sbjct: 1 MNLVWYRNDLRVAAHSPLHAALTESSISAGETRPQALAVYCLCQGQWDRHQVAPLRRWYV 60 Query: 62 YASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDK 121 SL ++ +SL+ +GI F+ E L + Q VT L+ NR+Y +NE +RD Sbjct: 61 LESLRELGESLANRGIDLHVLDVDTFEKVPEALAEFAQSQGVTHLYCNREYPLNEKQRDT 120 Query: 122 LLEKRLQHR-VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVP 180 L+ +RL+ + +I + FDD VL+PP ++ Y V+ ++K PVP Sbjct: 121 LVAERLREQGIILRGFDDGVLVPPAALRTGKGTPYTVFGAYKKRWDVWTADHHPAMTPVP 180 Query: 181 A-IRLTGPVTPSNIP----RFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRD 235 + R G + + D P +A+ + GE+ A L +F + + Y RD Sbjct: 181 SQCRAEGTFMGAKVVAKALEMLDVP-EALTQQWAPGEEAAWQQLDQFMERSLADYRRNRD 239 Query: 236 IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLM 295 P + GTS LS LS G LS C+ + D + GA W++EL WR+FYR +M Sbjct: 240 FPDLSGTSGLSVALSAGTLSVASCFRAATQAMAD--AGSRDGAACWIDELAWRDFYRQIM 297 Query: 296 AFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRM 355 A +P V G+ F P T+ +EW D L AW +G TG+P++DAAMRQL GWMHNRLRM Sbjct: 298 AQFPRVSRGQGFRPETDLLEWKNDDELFAAWCEGRTGYPLVDAAMRQLVATGWMHNRLRM 357 Query: 356 ITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQG 415 +TA FL K L +DWR GE +FM+ L+DGD A+NNGGWQW+AS+G D+VPYFR+FNP QG Sbjct: 358 VTAMFLSKHLWLDWRRGEAFFMTHLIDGDFAANNGGWQWSASSGTDAVPYFRVFNPVRQG 417 Query: 416 KRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYY 475 +RFD +G FI HW+P+L ++ ++ IH P W + L+ +YP P+V H + Sbjct: 418 QRFDSEGRFIAHWVPQLRDLDSKQIHEP--W-KQPLLARDYPPPVVPHAGVRERVTVAFK 474 Query: 476 AAKKQ 480 AAK + Sbjct: 475 AAKSR 479 >gi|332306448|ref|YP_004434299.1| Deoxyribodipyrimidine photo-lyase [Glaciecola agarilytica 4H-3-7+YE-5] gi|332173777|gb|AEE23031.1| Deoxyribodipyrimidine photo-lyase [Glaciecola agarilytica 4H-3-7+YE-5] Length = 482 Score = 347 bits (890), Expect = 2e-93, Method: Compositional matrix adjust. Identities = 193/480 (40%), Positives = 276/480 (57%), Gaps = 25/480 (5%) Query: 11 LVWLRNDLRITDNKAL-YA-ACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 LVWLR DLR + N A+ YA A H S V AV+ T +QW ++ ++ + IY L+ + Sbjct: 4 LVWLRTDLRSSWNSAIDYAVASHES---VSAVYFVTQKQWSKYNMANSKIALIYQRLVSL 60 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL- 127 Q+ L ++ I Q ++ E L C++ VT ++ N +YE +E +RD ++ L Sbjct: 61 QEELKERNINLQVMDGGIYETLPEKLTELCVKNHVTHVYCNAEYEWDERQRDASVKNSLN 120 Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLP-VP---AIR 183 + V +F D+ L+ P I+N + YKV+TP+ K ++ LR LP VP + Sbjct: 121 KMDVAFATFHDTCLVKPTEIMNLKNEPYKVFTPYFK----RWLEMTLRQLPGVPEKCSAN 176 Query: 184 LTGPVTPSNIPRFFDYPFQAID---------PMFPIGEQNALHILRKFCKEKVYYYVEQR 234 TG + ++ + + P +P + F E Y + R Sbjct: 177 DTGLKHSEDDNQYIESLISKTNRQGSDGSDAPSWPATASEITKKMNGFIVEFAPDYPKNR 236 Query: 235 DIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHL 294 DIP+I+GTS++SPYLSIG LSPRQC + +E+ + + P+ GA++W+ E+ WR+FYR++ Sbjct: 237 DIPSIEGTSKISPYLSIGALSPRQCLFHVLQEYGEDALSPEHGAYTWVKEIAWRDFYRYV 296 Query: 295 MAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLR 354 M +P V G PF + +W + AWK G TG+PI+DAAM L GWMHNRLR Sbjct: 297 MFHFPHVSRGLPFQKHYQYFKWENNQQHFDAWKAGETGYPIVDAAMIALKQTGWMHNRLR 356 Query: 355 MITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQ 414 MI ASF K LL+ W+ E+YFMSQL+DGD ASNNGGWQW+AS G D+ PYFRIFNPT Q Sbjct: 357 MIVASFYCKHLLLPWKWAEDYFMSQLIDGDYASNNGGWQWSASVGTDAAPYFRIFNPTTQ 416 Query: 415 GKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQY 474 +RFDPQG FI+ WLP+L ++ + +H P D L Y LPIV+HK + T Q+ Sbjct: 417 SERFDPQGEFIKTWLPQLAHLSPKQVHEPSKHCDVQ--RLGYALPIVEHKASVARTKAQF 474 >gi|152995181|ref|YP_001340016.1| deoxyribodipyrimidine photo-lyase [Marinomonas sp. MWYL1] gi|150836105|gb|ABR70081.1| Deoxyribodipyrimidine photo-lyase [Marinomonas sp. MWYL1] Length = 470 Score = 346 bits (888), Expect = 4e-93, Method: Compositional matrix adjust. Identities = 189/462 (40%), Positives = 262/462 (56%), Gaps = 13/462 (2%) Query: 9 VHLVWLRNDLRITDNKALYAAC--HNSDAKVIAVFIA-TPEQWRQHGISARQSHFIYASL 65 HLVWLRNDLR DN ALY A N + IAV + TP+QW QH S ++ + Sbjct: 4 THLVWLRNDLRCVDNPALYLASLEANFAREGIAVIVTPTPKQWEQHNESDAKNGLRAGLI 63 Query: 66 LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125 + K+L+ GI + FD + + +CL + L++NR I+E +RD+ + + Sbjct: 64 KNLAKTLATLGIPLHTLEADTFDQLPDAITVFCLSNNIKHLWFNRDLPIHEQQRDQAVCE 123 Query: 126 RLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185 +LQ I + ++ +L+ +KV+TPF + L Q D+ LP P + Sbjct: 124 QLQQHQISTHVQATDIIVSQDVLSQQGTPFKVFTPFFNRWVTMLAQQDITPLPTPDPQAE 183 Query: 186 GPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245 P + ++ PF+ D ++P A L +FC K +Y E RD P TS L Sbjct: 184 ALPEPC-LNLTWEKPFR--DDLWPADHDTAKQKLWQFCHHKERHYQEGRDYPIEPATSTL 240 Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFS-WLNELIWREFYRHLMAFYPSVCMG 304 SPYL++G L PRQC L+ F + + S WL EL WR+FYR LM+ +P +C Sbjct: 241 SPYLALGALGPRQC---LEAIFYTCNQEERRWQDSIWLKELAWRDFYRQLMSHFPFLCKS 297 Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364 +PF P T + W ++ QAW +G TGFPI+DAAMRQLN GWMHNRLRM+ ASF K Sbjct: 298 RPFKPETSALIWRQNEEEFQAWCEGRTGFPIVDAAMRQLNQTGWMHNRLRMVAASFFTKL 357 Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424 + DWR GE YFMS+L+DG+ A+NNGGWQW+ASTG D+ PYFR+FNPT Q + +D G F Sbjct: 358 MFADWRRGEAYFMSKLIDGEFAANNGGWQWSASTGCDAAPYFRVFNPTRQSQTYDKNGDF 417 Query: 425 IRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKA 466 IR ++PEL + + IH P K +YP PI+D+K A Sbjct: 418 IRRFVPELTKLDAKSIHDPKPEQRKQ---CHYPEPIIDYKPA 456 >gi|32490931|ref|NP_871185.1| hypothetical protein WGLp182 [Wigglesworthia glossinidia endosymbiont of Glossina brevipalpis] gi|25166137|dbj|BAC24328.1| phrB [Wigglesworthia glossinidia endosymbiont of Glossina brevipalpis] Length = 475 Score = 346 bits (888), Expect = 5e-93, Method: Compositional matrix adjust. Identities = 190/473 (40%), Positives = 278/473 (58%), Gaps = 10/473 (2%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M +L+W R DLR+ DN ALY AC + + I ++W + +S + F+Y ++ Sbjct: 1 MIDNLIWFRKDLRLNDNPALYYACVDEYKSASGILILNKKKWNEKIVSKNRIRFMYKNIF 60 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 ++++L + GI ++ C +F + L ++C +V +L++N+ E ++ DK++ K+ Sbjct: 61 SLKRNLKKIGIELIFYTCRDFFEYTCLLYNFCYTNKVKELYFNKGIEKEDLEEDKIIIKK 120 Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 L+ C F+ ++L+ P I N + YKVY+ F K+ I + ++ +P P IR Sbjct: 121 LKKITKCICFNGNLLIDPEKIKNKNKKTYKVYSYFLKSCISFISNNNINIIPFPKIR--- 177 Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246 N+ + ++ + + P E++AL+ L F K K+ Y RD I TS LS Sbjct: 178 -KNKLNLIKSYNDSIKIKKKLSPCYEEHALNKLNNFIKLKINKYHITRDF-CINSTSFLS 235 Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP 306 PY++IGVLS R+C N +K D + K SG F W +E+IWREF HL+ Y K Sbjct: 236 PYINIGVLSLRECINNIKNNNFDFIEKKNSGHFKWFSEIIWREFCHHLIIEYSDFFDSKK 295 Query: 307 FIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLL 366 I WT+ I+W +QAWK G TGFPIIDAAMRQL GWMHNRLRMIT+SFLVKDLL Sbjct: 296 LIKWTKYIKWENKIKKIQAWKNGTTGFPIIDAAMRQLKKTGWMHNRLRMITSSFLVKDLL 355 Query: 367 VDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIR 426 VDW+IGE+YF L+DG+ A NN WQW +S+G S PYFR+ NP Q K+F +I+ Sbjct: 356 VDWKIGEKYFYYHLIDGNSAINNFNWQWISSSGICSSPYFRMINPITQSKKFKSIYKYIK 415 Query: 427 HWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479 W+PEL N+P IH P++W+ KN +NYP I++HK A +N + A KK Sbjct: 416 FWIPELKNIPFNEIHEPYNWIIKN--KINYPNQIIEHKTA---KINFFKACKK 463 >gi|71065000|ref|YP_263727.1| deoxyribodipyrimidine photo-lyase type I [Psychrobacter arcticus 273-4] gi|71037985|gb|AAZ18293.1| Deoxyribodipyrimidine photo-lyase type I [Psychrobacter arcticus 273-4] Length = 541 Score = 345 bits (886), Expect = 8e-93, Method: Compositional matrix adjust. Identities = 198/507 (39%), Positives = 273/507 (53%), Gaps = 50/507 (9%) Query: 10 HLVWLRNDLRITDNKALYAACH--NSD-AKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 +L+W R DLR+ DN AL A C N+D AK+ AVF TPEQW+ H +S Q I +L Sbjct: 24 YLMWFRRDLRVHDNTALAAICERANTDNAKLSAVFFLTPEQWQTHDMSLTQLDHIARTLP 83 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 + + L I C +F D I L + C ++ + N +YE NE+ RD+ L K+ Sbjct: 84 ILAQKLQALNITLTVQICPSFTDCIAALSALCESNNISCVMANHEYEGNEIARDEQLTKQ 143 Query: 127 LQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIR-- 183 L I + D +LPP +I + MY+V+TPF K L D++ PAI Sbjct: 144 LAKTDIEFIRWHDQCILPPQTITTNDNSMYQVFTPFYKKWRHTLEVGDIQIHTAPAITNN 203 Query: 184 -----LTGPVTPSNI--------PRFFDYP--------FQAIDP---------MFPIGEQ 213 ++ + + I DY +Q ID +P GE Sbjct: 204 EQINLISSEFSANTIQAIEALCKETVHDYQQYLQTHECYQYIDTDKQISQARTAYPAGEA 263 Query: 214 NALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIK 273 A H L +F + + +Y RD+P++ TS LS YL+IG LSPR C+ + + +L Sbjct: 264 EACHRLTQFISDDINHYDVSRDVPSLHATSHLSAYLTIGALSPRLCYLQATKALGELHRN 323 Query: 274 PKSGAFS--------WLNELIWREFYRHLMAFYPSVCMGKPFIPWTEK-IEWNKDSHLLQ 324 S W++EL WR+FYRH++ + P + + + T+K I W+ D Sbjct: 324 DGDNFDSGDNNDINRWISELAWRDFYRHVLDYKPELIRHQAYKHETDKKINWSYDEDAFA 383 Query: 325 AWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGD 384 AW++G TG P++DAAMR LN G+MHNRLRM+TA FL KDLL+DWR GE YFM QL+DGD Sbjct: 384 AWREGKTGVPLVDAAMRCLNATGFMHNRLRMVTAMFLTKDLLIDWRWGERYFMQQLIDGD 443 Query: 385 LASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPH 444 ASNNGGWQW+ASTG DS PYFRI NP Q K D G F++ WLPEL +P +H+ Sbjct: 444 FASNNGGWQWSASTGTDSAPYFRIMNPFSQAKTHDSDGIFLKTWLPELEPIPASILHSED 503 Query: 445 SW---LDKND--LSLNYPLPIVDHKKA 466 L KN ++YP+P+V+HK A Sbjct: 504 KMRKALSKNGAFADIDYPIPMVEHKLA 530 >gi|308049190|ref|YP_003912756.1| deoxyribodipyrimidine photo-lyase [Ferrimonas balearica DSM 9799] gi|307631380|gb|ADN75682.1| Deoxyribodipyrimidine photo-lyase [Ferrimonas balearica DSM 9799] Length = 456 Score = 345 bits (885), Expect = 9e-93, Method: Compositional matrix adjust. Identities = 185/458 (40%), Positives = 272/458 (59%), Gaps = 25/458 (5%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 + LVW R+DLR+ D+ AL+AA + V+A++IA+P+QW+ H R++ + YA++ + Sbjct: 1 MQLVWFRDDLRVHDHPALFAAAQRGE-PVVALYIASPQQWQLHDCGPRKAQWHYANVQAL 59 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL- 127 +++L+ GI +C +FDD L + C + + + + +NE + LE++L Sbjct: 60 REALAGLGIPLTVWRCEHFDDIPARLGALCNEAGIGAVHCHHGLGVNE----RALEQKLA 115 Query: 128 -QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 Q V + D+ L+ +I +Y+V+TPF + Q + P + Sbjct: 116 DQLPVPLHRYADANLVDYSAITTGQGGLYQVFTPFARRCRQWMAPPQPLPAPE--PQAAQ 173 Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246 P ++ D + +D ++P GEQ A L +FC++++ Y + RD PA GTS LS Sbjct: 174 PPLQAD-----DAWSETVDLLWPAGEQAAARTLARFCQQRLSAYHDDRDWPAKAGTSALS 228 Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP 306 PY + GVLSPRQ + L ++ GA SWLNEL+WREFYR+L+ + + Sbjct: 229 PYFAAGVLSPRQAAHALSQQ------ADGEGAQSWLNELLWREFYRYLLYHHARLSRHDA 282 Query: 307 FIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLL 366 P ++ W + L+ W+QG TGFP++DA MRQLN GWMHNR+RM+ ASFLVKDL Sbjct: 283 LFP-AKEARWEANDEWLRRWQQGRTGFPLVDAGMRQLNATGWMHNRVRMLCASFLVKDLH 341 Query: 367 VDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIR 426 +DWR+GE YFM QL+DGDLASNNGGWQWAA G D+ PYFR F+P Q +RFDP G +IR Sbjct: 342 IDWRLGEAYFMQQLVDGDLASNNGGWQWAAGCGADAAPYFRSFSPYRQSERFDPDGDYIR 401 Query: 427 HWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHK 464 W+PEL VP + +H +L L+ +YP P+VDHK Sbjct: 402 QWVPELAEVPARQLHKGGPFL----LAPDYPAPMVDHK 435 >gi|85711625|ref|ZP_01042682.1| Deoxyribodipyrimidine photolyase [Idiomarina baltica OS145] gi|85694485|gb|EAQ32426.1| Deoxyribodipyrimidine photolyase [Idiomarina baltica OS145] Length = 468 Score = 345 bits (884), Expect = 1e-92, Method: Compositional matrix adjust. Identities = 182/471 (38%), Positives = 268/471 (56%), Gaps = 11/471 (2%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 +VW R+DLR DN AL AAC N V A+F+ W+ H + + + L + ++ Sbjct: 4 VVWFRSDLRTVDNPALDAACLNH-KHVYALFLVPQRTWQAHDWAPIKVDLWWRHLAEFKQ 62 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130 L+ KGI F F S + +C + +V ++ NR+Y ++E+ RDK + R Sbjct: 63 ELADKGIGFSIFTIDRFSQSGATIADFCEKHKVNTVYANREYPLDEIERDKQARACFEQR 122 Query: 131 VI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189 I + FD ++L+PP ++ YKV+TPF +A + A + + R+ V Sbjct: 123 DIEFQLFDGNLLVPPEAVETKQGGYYKVFTPFNRAWRTEV--AKISDWTPESWRVENTVA 180 Query: 190 PSN-IPRFFDYPFQAIDP-MFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSP 247 S +P+ P + + +P+G Q + L +F + +V Y +RD P++ GTS +S Sbjct: 181 SSTELPQC---PLERKNSQTYPVGRQAIMGKLGQFIEHQVDEYKARRDEPSVDGTSMMSA 237 Query: 248 YLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPF 307 Y +G ++P+ L + + GA +WL E+ WREFY+HLM P + G+ + Sbjct: 238 YFEMGAIAPKTVARALSSLSPEFPYGLEPGADTWLTEVAWREFYQHLMFHEPRLSRGENY 297 Query: 308 IPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLV 367 T+ + W QAW G TGFPI+DA MRQLN GWMHNRLRMI A+FLVKDLL+ Sbjct: 298 QTETQGLPWRDAEEDFQAWCDGRTGFPIVDAGMRQLNETGWMHNRLRMIVANFLVKDLLI 357 Query: 368 DWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRH 427 DWR GE+YFM L+DG +NNGGWQW+AS G D+VPYFR+FNP Q ++FDP G +IR Sbjct: 358 DWRKGEQYFMRNLVDGSFPANNGGWQWSASVGTDAVPYFRVFNPVRQSEKFDPDGIYIRT 417 Query: 428 WLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478 W+ EL +VP+++IH PHS+L ++ Y PIVDH +A L+ + K Sbjct: 418 WIKELADVPSKHIHWPHSYLKQH--KTGYVSPIVDHSEARERFLSTFKQVK 466 >gi|262377211|ref|ZP_06070436.1| deoxyribodipyrimidine photolyase FAD-binding [Acinetobacter lwoffii SH145] gi|262307949|gb|EEY89087.1| deoxyribodipyrimidine photolyase FAD-binding [Acinetobacter lwoffii SH145] Length = 469 Score = 343 bits (880), Expect = 3e-92, Method: Compositional matrix adjust. Identities = 191/470 (40%), Positives = 281/470 (59%), Gaps = 24/470 (5%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 + L+W R DLRI D+ AL+ A IAV + +PEQW+ H + + F L + Sbjct: 1 MQLIWFRQDLRIHDHAALWHATQQ--GSCIAVMVLSPEQWKLHQDARIKIDFYLRRLDIL 58 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128 ++ L+Q I + D + S C + ++ L N + +NE++RD +++ L+ Sbjct: 59 KQQLAQLNIPLIILNVPLWQDLPAEMRSLCQKLQIDTLHANIEVGVNELQRDAQVQQMLE 118 Query: 129 HRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLP--VPAIRLT 185 + I + + D L P SI N + Q Y++Y+ F+K + L+Q ++P P I+ Sbjct: 119 QQQIRVELYHDRSLFPLTSIRNQSNQPYQIYSAFKKKCYERLIQ----NIPGCYPDIQAQ 174 Query: 186 GPVT-PSNIPRF------FDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPA 238 PV P + F +Y ++P + AL +L F ++K+ +Y +R++PA Sbjct: 175 DPVELPDQLTSFDLQKFAANYEVDHAAQLWPAQDHTALELLDDFIEDKIAHYKTERELPA 234 Query: 239 IQGTSQLSPYLSIGVLSPRQCWNRL-KEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAF 297 + GTS+LSPYL+IG+LS RQC L K+ + + G +WL+EL+WREFY H + Sbjct: 235 VDGTSRLSPYLNIGILSIRQCMQTLFKDSYFQI---DDIGQQTWLDELLWREFYLHTLFD 291 Query: 298 YPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMIT 357 +P V +PF T+ I+W L AW+QG TG PI+DA MRQ+ GWMHNR+RMIT Sbjct: 292 FPRVSRHRPFKENTDNIQWRNAPDNLAAWQQGQTGIPIVDAGMRQMRATGWMHNRVRMIT 351 Query: 358 ASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKR 417 A FL K+LL+DWR+GE +FM L+DGDLA+NNGGWQW ASTG D+VPYFRIFNP Q ++ Sbjct: 352 AMFLCKNLLIDWRLGESWFMQHLIDGDLAANNGGWQWCASTGMDAVPYFRIFNPVSQSQK 411 Query: 418 FDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKN-DLSLNYPLPIVDHKKA 466 FDP G +IR W+PEL ++ + IH P++ KN DL+L+YP PIVD K + Sbjct: 412 FDPNGDYIRQWVPELTHLNAKSIHEPYA---KNPDLALDYPKPIVDLKAS 458 >gi|50084372|ref|YP_045882.1| deoxyribodipyrimidine photolyase (photoreactivation), FAD-binding [Acinetobacter sp. ADP1] gi|49530348|emb|CAG68060.1| deoxyribodipyrimidine photolyase (photoreactivation), FAD-binding [Acinetobacter sp. ADP1] Length = 477 Score = 342 bits (877), Expect = 8e-92, Method: Compositional matrix adjust. Identities = 186/464 (40%), Positives = 268/464 (57%), Gaps = 16/464 (3%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 L+W RNDLR+ D+ AL+ A IA +P QW+QH + + F L Q+++ Sbjct: 4 LIWFRNDLRLNDHAALWHATQA--GSTIAFVALSPLQWQQHDDAIIKIDFYMRQLTQLKQ 61 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130 L+ I + D + S + + ++ N + INE+ RD +++ L Sbjct: 62 ELNTINIPLIVQIIPLWKDIATEIISISDRYHIQDVYANIETGINEIERDHAVQEALSK- 120 Query: 131 VICKS---FDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187 I K+ F D L P GSI N + Y+V+TPF+K + L + P P + P Sbjct: 121 -IGKNLILFHDKTLFPLGSIRNKSQAPYQVFTPFKKTCYERLNIDIPKCFPYPHKQKQQP 179 Query: 188 VTP---SNIPRFFDYPFQAIDPM----FPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ 240 + IP + ID +PIGE AL++L F ++K+ Y E RD PA Sbjct: 180 EIAKKEAAIPSLKQLGYSQIDQHIQNEWPIGETFALNLLEDFTQDKINRYHESRDYPAQD 239 Query: 241 GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPS 300 GTS +S YL+IG+LS RQC + ++ G WLNEL+WREFY+ L+ +P Sbjct: 240 GTSHISAYLTIGILSIRQCIQAIFQKQHGQFFLNNKGQEIWLNELLWREFYQQLLFDFPK 299 Query: 301 VCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASF 360 + +PF T+ I WN++ +AW QG TG PI+DA MRQL GWMHNR+RMI A F Sbjct: 300 LSRHQPFQDHTKNIPWNENDEHFEAWIQGKTGIPIVDAGMRQLKATGWMHNRVRMICAMF 359 Query: 361 LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDP 420 L K+LL+DWR GE++FM L+DGDLA+N+GGWQW+ASTG D+ PYFRIFNP Q ++FDP Sbjct: 360 LSKNLLIDWRKGEKWFMQHLIDGDLAANDGGWQWSASTGTDASPYFRIFNPVTQSQKFDP 419 Query: 421 QGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHK 464 +G F++ W+PEL ++ +++IH P+++ K + LNYP PI+D K Sbjct: 420 EGVFLKKWIPELKHLDSKHIHDPYAYQHKTE--LNYPKPIIDLK 461 >gi|109898496|ref|YP_661751.1| deoxyribodipyrimidine photolyase [Pseudoalteromonas atlantica T6c] gi|109700777|gb|ABG40697.1| deoxyribodipyrimidine photo-lyase type I [Pseudoalteromonas atlantica T6c] Length = 481 Score = 342 bits (877), Expect = 8e-92, Method: Compositional matrix adjust. Identities = 191/480 (39%), Positives = 269/480 (56%), Gaps = 26/480 (5%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 LVWLR DLR N A+ A N D V AV+ T EQW + +S+ + IY L+ + K Sbjct: 4 LVWLRTDLRSKWNSAIDYAVDNHD-NVTAVYFTTKEQWDTYNLSSHKVALIYQRLVNLHK 62 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130 L+++ I Q + S + L C + VT ++ N +YE +E +RD ++ L+ Sbjct: 63 ELAERNIELQVIEGSIYQAIPVRLKDICTKIGVTHVYCNAEYEWDERQRDLAVKNILKKI 122 Query: 131 VI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189 I F D+ L+ P I+N + YKV+TP+ K + +Q +P + + Sbjct: 123 DIPLAMFHDTCLVKPTEIMNLKNEPYKVFTPYFKRWLDTTLQQ------LPGVPDNHKAS 176 Query: 190 PSNIPRFFDYPFQAIDPMFPIGE------------QNALHILRK---FCKEKVYYYVEQR 234 + + + + Q ID + E A I +K F E Y + R Sbjct: 177 DTGLSQSANDSIQ-IDSLLKTNEIEISKEFSTNWPTTAAKITKKLNAFIIEFSPVYPKNR 235 Query: 235 DIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHL 294 DIP++ GTS++SPYLSIG LSP QC + +E+ D + + GA++W+ E+ WR+FYR++ Sbjct: 236 DIPSVDGTSKVSPYLSIGALSPAQCLFHVLQEYGDDALSLEHGAYTWIKEIAWRDFYRYV 295 Query: 295 MAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLR 354 M +P V G PF + +W + H AWK G TG+PI+DAAM L GWMHNRLR Sbjct: 296 MYHFPHVSRGLPFQKHYQHFKWESNQHHFDAWKAGKTGYPIVDAAMIALRETGWMHNRLR 355 Query: 355 MITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQ 414 MI ASF K LL+ W+ E+YFMSQL+DGD ASNNGGWQW+AS G D+ PYFRIFNPT Q Sbjct: 356 MIVASFYCKHLLLPWKWAEDYFMSQLIDGDYASNNGGWQWSASVGTDAAPYFRIFNPTTQ 415 Query: 415 GKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQY 474 +RFDP+G FI+ WLPEL ++ + IH P D + Y LPIV+HK + T Q+ Sbjct: 416 SERFDPKGEFIKTWLPELEHLSPKQIHEPSKHCDVQ--RIGYALPIVEHKASVMRTKEQF 473 >gi|254428910|ref|ZP_05042617.1| deoxyribodipyrimidine photolyase family [Alcanivorax sp. DG881] gi|196195079|gb|EDX90038.1| deoxyribodipyrimidine photolyase family [Alcanivorax sp. DG881] Length = 501 Score = 342 bits (877), Expect = 9e-92, Method: Compositional matrix adjust. Identities = 184/490 (37%), Positives = 274/490 (55%), Gaps = 30/490 (6%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVI------AVFIATPEQWRQHGISARQSHFIY 62 ++LVW RNDLR+ + L AA S + + AV+ QW +H ++ + ++ Sbjct: 1 MNLVWYRNDLRVAAHSPLQAALSESSGEAVSGPRALAVYCLCQGQWDRHQVAPLRRWYVL 60 Query: 63 ASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKL 122 S+ ++ ++L+++GI + F E L + + VT L+ NR+Y +NE +RDK Sbjct: 61 ESVRELGEALARRGIDLHVLEADTFAAVPEVLAQFAQEHGVTHLYCNREYPLNEKQRDKA 120 Query: 123 LEKRLQHR-VICKSFDDSVLLPPGSILNHALQMYKVYTPFRK-----------ALIQNLV 170 + +RL+ + V + FDD VL+PP ++ Y V+ ++K A+ Sbjct: 121 VAERLRGQGVSLQGFDDGVLVPPAALRTGKGTPYTVFGAYKKRWDVWMADHHPAVTPAPP 180 Query: 171 QADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYY 230 ++D R V A + + ++P +A+ + GE+ A L +F ++ + Y Sbjct: 181 ESDHRGNFVGAAVVDKALKALSVP-------EALTQQWLPGEEAAWQQLDQFVEQALAGY 233 Query: 231 VEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREF 290 QRD P I GTS LS LS G LS C+ + D + GA W+ EL WR+F Sbjct: 234 RRQRDFPDIAGTSGLSAALSAGALSVASCYRAASQAMAD--AGSRDGATCWIGELAWRDF 291 Query: 291 YRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMH 350 YR +MA +P V G+ F P T+ ++W++D AW +G TG+P++DAAMRQL GWMH Sbjct: 292 YRQIMAQFPRVSRGQAFRPETDLLQWDQDDERFAAWCEGRTGYPLVDAAMRQLVATGWMH 351 Query: 351 NRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFN 410 NRLRM+TA FL K L +DWR GE +FM+ L+DGD A+NNGGWQW+AS G D+VPYFR+FN Sbjct: 352 NRLRMVTAMFLSKHLWLDWRRGEAFFMAHLMDGDFAANNGGWQWSASAGTDAVPYFRVFN 411 Query: 411 PTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHT 470 P QG+RFD +G FI W+PEL + ++ IH P W + L+ +YP PIV H Sbjct: 412 PVRQGQRFDSEGRFIARWVPELRGLDSKQIHEP--W-KQPLLAPDYPPPIVPHAGVRERV 468 Query: 471 LNQYYAAKKQ 480 + AAK Q Sbjct: 469 TTAFKAAKTQ 478 >gi|294649780|ref|ZP_06727183.1| deoxyribodipyrimidine photo-lyase [Acinetobacter haemolyticus ATCC 19194] gi|292824331|gb|EFF83131.1| deoxyribodipyrimidine photo-lyase [Acinetobacter haemolyticus ATCC 19194] Length = 476 Score = 341 bits (874), Expect = 2e-91, Method: Compositional matrix adjust. Identities = 191/467 (40%), Positives = 273/467 (58%), Gaps = 18/467 (3%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 L+W R DLRI D+ AL+ A + +A+ I +PEQW+ H + + F L Q+Q Sbjct: 7 LIWFRQDLRIHDHAALWHATQT--GRTVALVILSPEQWQLHDDAPIKIDFYLRQLQQLQI 64 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL-QH 129 +L I + D + + +++ N + +NE++RD ++K L Q Sbjct: 65 ALQSLNIPLIVQHLPLWKDITQLFADLMQNIPIQQVYANIELGVNELKRDNEVQKLLNQQ 124 Query: 130 RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189 F D L P SI N + Q Y+V++ F+K Q L Q+ + PVP ++ P+ Sbjct: 125 NKELVLFHDRTLFPVASIRNQSHQPYQVFSAFKKVCYQRLQQSLPQCYPVPDVQ--QPIN 182 Query: 190 PSNIPRFFDYP---------FQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ 240 P D+ + +P+ E AL +L +F +++ Y RD PA Sbjct: 183 IDPYPSLEDFKELQLKYTQQLNHLTQQWPVSESFALTLLDQFIHDRLDDYKNARDFPAQA 242 Query: 241 GTSQLSPYLSIGVLSPRQCWNRL-KEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYP 299 GTSQ+S YL+IG+LS RQC L ++ D LI+ + G +WL+EL+WREFY+H++ YP Sbjct: 243 GTSQVSAYLNIGILSIRQCLQALFHKQHGDFLIESE-GQQTWLDELLWREFYQHILFDYP 301 Query: 300 SVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITAS 359 V PF T+KI W D LQ W+QG+TG PI+DA MRQL GWMHNR+RMI A Sbjct: 302 RVSKHLPFQLSTQKIHWRDDPVALQQWQQGHTGIPIVDAGMRQLLATGWMHNRVRMICAM 361 Query: 360 FLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFD 419 FL K+LL+DWR GE++FM L+DGDLA+NNGGWQW ASTG D+ PYFRIFNP Q ++FD Sbjct: 362 FLSKNLLIDWRKGEQWFMQHLIDGDLAANNGGWQWCASTGTDAAPYFRIFNPISQSQKFD 421 Query: 420 PQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKA 466 P G ++R W+PEL ++ + IH P+++ K + SLNYP+PIVD K + Sbjct: 422 PNGDYLRQWIPELAHLDAKSIHEPYAY--KMNSSLNYPIPIVDLKSS 466 >gi|255318398|ref|ZP_05359631.1| deoxyribodipyrimidine photo-lyase [Acinetobacter radioresistens SK82] gi|262378628|ref|ZP_06071785.1| deoxyribodipyrimidine photolyase FAD-binding [Acinetobacter radioresistens SH164] gi|255304390|gb|EET83574.1| deoxyribodipyrimidine photo-lyase [Acinetobacter radioresistens SK82] gi|262299913|gb|EEY87825.1| deoxyribodipyrimidine photolyase FAD-binding [Acinetobacter radioresistens SH164] Length = 479 Score = 339 bits (869), Expect = 7e-91, Method: Compositional matrix adjust. Identities = 195/470 (41%), Positives = 267/470 (56%), Gaps = 17/470 (3%) Query: 7 MSVH-LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASL 65 MSV+ LVW R DLRI D+ AL+ A IA+ +P QWRQH + + L Sbjct: 1 MSVYQLVWFRQDLRIVDHSALWHA--RQTGPCIALVTLSPVQWRQHDDAVIKIDLYLRQL 58 Query: 66 LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125 +++ L Q I + + E+L C V ++ + + INE +RD+ ++ Sbjct: 59 KVLKEQLKQLNIPIIIQTIPLWKEVPEFLLECCQSLSVQQIHAHIEAGINEQQRDQDCQQ 118 Query: 126 RLQHRVICKS-FDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRS-------- 176 L I + + D L P GSI N Q Y+V+ F+KA L A + Sbjct: 119 LLDTSGIALTLYQDRTLFPFGSITNQNGQPYQVFGAFKKACYSRLEIALPKCYTEITAQN 178 Query: 177 -LPVPAIRLTGPVTPSNIPRFFDYPF-QAIDPMFPIGEQNALHILRKFCKEKVYYYVEQR 234 + +PA+ P +I + D P ++I ++P E +A +L +F + + +Y +R Sbjct: 179 PITLPALDQFQQTVP-DIRQLCDIPVPESIQQLWPACENHAHTLLEQFLENHIQHYHIER 237 Query: 235 DIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHL 294 D PA GTSQLS YL+IGVLS RQC L + + G WL+EL+WREFY+H+ Sbjct: 238 DFPAHSGTSQLSAYLNIGVLSIRQCIQALFRHQSGYFVPEQEGQSIWLDELLWREFYQHI 297 Query: 295 MAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLR 354 + +P+V PF I W D L AW+QG TG PI+DA MRQL GWMHNR+R Sbjct: 298 LYLFPNVSKYLPFKANARNIPWQDDKTALTAWQQGQTGIPIVDAGMRQLLVTGWMHNRVR 357 Query: 355 MITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQ 414 MITA FL K+LL+DWR GE++FM L+DGDLA+NNGGWQW ASTG DSVPYFRIFNP Q Sbjct: 358 MITAMFLCKNLLIDWRQGEQWFMQHLIDGDLAANNGGWQWCASTGTDSVPYFRIFNPVSQ 417 Query: 415 GKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHK 464 ++FDP+G +IR W+PEL ++ + IHAP+ K L+YP PIVD K Sbjct: 418 SRKFDPEGQYIRTWIPELAHLDAKTIHAPYE--SKTVQQLDYPKPIVDLK 465 >gi|329133694|gb|AEB78728.1| DNA photolyase [Acinetobacter sp. Ver3] Length = 470 Score = 338 bits (867), Expect = 1e-90, Method: Compositional matrix adjust. Identities = 190/475 (40%), Positives = 272/475 (57%), Gaps = 11/475 (2%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 ++L+ DLR+ DN AL A + ++ AV I + EQW+ H S + F L V Sbjct: 1 MNLIGFSQDLRVRDNTALMEATRHGNS--CAVVILSHEQWKLHDDSEIKIDFYLRQLKSV 58 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128 + L Q I ++D L ++ + +VT + N + +NE+ RD ++ L+ Sbjct: 59 ENELKQFNIPVMVEIVPQWEDVPARLLTFANKYQVTVIHANIEIGVNELHRDAQVQTLLE 118 Query: 129 -HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIR---L 184 H+V + + D + P GSI N Q Y+V +++A + L + L+ L VP ++ L Sbjct: 119 SHKVTVEYYHDRTIFPLGSIRNKTHQPYQVLGAYKRACYEILNISVLQPLAVPKVQPHEL 178 Query: 185 TGPVTPSNIPRFFD-YPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS 243 IP D YP + +P+GE AL +L KF E + Y +QRD P I TS Sbjct: 179 IQRFHTFKIPSIHDFYPDAQVKYQWPVGESFALQMLEKFVDENLEPYKQQRDFPNIDATS 238 Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCM 303 QLSPYL++G++S RQC + G +WL+EL+WREFY+H++ +P + Sbjct: 239 QLSPYLNLGIVSIRQCLAAIFSRSNGNFHLYSDGQQTWLDELLWREFYQHILFDFPRLSK 298 Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363 +PF T + W L AWK G TG PI+DA +RQ+ GWMHNR+RMI A FL K Sbjct: 299 YQPFNLNTSNVPWRDAPDELNAWKFGQTGIPIVDAGIRQMLETGWMHNRVRMIVAMFLSK 358 Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423 +LL+DWR GE++FM L+DGDLA+NNGGWQW ASTG D+VPYFRIFNP Q ++FD QG Sbjct: 359 NLLIDWRKGEQWFMQHLIDGDLAANNGGWQWCASTGTDAVPYFRIFNPISQSQKFDSQGN 418 Query: 424 FIRHWLPELNNVPTQYIHAPHSWLDKN-DLSLNYPLPIVDHKKACHHTLNQYYAA 477 +IR W+PEL ++ + IH P++ KN +L LNYP PIVD K + L + +A Sbjct: 419 YIRKWVPELAHLDAKIIHEPYA---KNPNLKLNYPKPIVDLKMSRQRALAAFKSA 470 >gi|148652562|ref|YP_001279655.1| deoxyribodipyrimidine photo-lyase [Psychrobacter sp. PRwf-1] gi|148571646|gb|ABQ93705.1| Deoxyribodipyrimidine photo-lyase type I [Psychrobacter sp. PRwf-1] Length = 550 Score = 338 bits (866), Expect = 1e-90, Method: Compositional matrix adjust. Identities = 201/547 (36%), Positives = 284/547 (51%), Gaps = 89/547 (16%) Query: 11 LVWLRNDLRITDNKAL-------YAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYA 63 L+W R DLR+ DN AL A ++++ + AVF+ TP+QW H +S Q + Sbjct: 10 LMWFRRDLRLHDNTALTLLLEQVVQASQHTESCLQAVFVMTPKQWLAHDMSISQVDLMMR 69 Query: 64 SLLQVQKSLSQK-GIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKL 122 +L + + L GI Q ++ DSI+ ++++C+ +T + N +YE+NE +RD Sbjct: 70 TLTHLTRDLHHTLGIKLSVLQAESYSDSIDVIEAFCVDNHITHVGCNYEYEVNEQQRDTA 129 Query: 123 LEKRLQH-RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNL-----VQADLRS 176 L KRL + + D +LPP +I +YKV+TPF K Q L V D+ S Sbjct: 130 LAKRLSKLNIKFNQYHDQCILPPNTIKTGDDTLYKVFTPFYKKWQQTLQISPPVLYDINS 189 Query: 177 LPVPAIRLTGPVTPSNI---------------------------------PRFF------ 197 L I+ +T NI RF Sbjct: 190 LTEGDIK--QKLTDLNINQASTDTSSTQNTSSTQHTSSTQSIKDSHQSVLQRFTSHYQLS 247 Query: 198 ----DYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGV 253 D ++ +P GEQ A+ L F ++ + Y RD PA+ GTSQLS YL++G+ Sbjct: 248 KNNADTILESARADYPAGEQAAIDRLNSFVQQDIEEYGITRDQPALMGTSQLSAYLTLGI 307 Query: 254 LSPRQCW----NRLKEE-FVDLLIK-------PKSGAFSWLNELIWREFYRHLMAFYPSV 301 +SPR C+ RL+ + F D K KS W++EL WR+FYRH+ P + Sbjct: 308 ISPRLCYLTANARLESKSFADNESKLEIFENNSKSDVERWISELAWRDFYRHVTVDRPDI 367 Query: 302 CMGKPFIPWTE-KIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASF 360 G + T+ K+ W+ D+ +AW QG TG P+IDAAMR LN G+MHNRLRM+TA F Sbjct: 368 VKGAAYKKDTDNKLNWSYDNDDFEAWCQGMTGVPLIDAAMRCLNQTGFMHNRLRMVTAMF 427 Query: 361 LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDP 420 L KDL +DWR+GE YFM L+DGD ASNNGGWQW+ASTG D+ PYFRI NP Q K D Sbjct: 428 LTKDLFIDWRLGERYFMQNLIDGDFASNNGGWQWSASTGTDAAPYFRIMNPFSQAKTHDK 487 Query: 421 QGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLS-----------LNYPLPIVDHKKACHH 469 FI+ WLPEL ++ +H D+N L +NYPLP+++HK+A + Sbjct: 488 DAIFIKSWLPELTDITANILH------DENKLRKALSKQGAFAHVNYPLPMIEHKQARRY 541 Query: 470 TLNQYYA 476 + Q+ A Sbjct: 542 AIEQFKA 548 >gi|226952488|ref|ZP_03822952.1| deoxyribodipyrimidine photolyase (photoreactivation) FAD-binding [Acinetobacter sp. ATCC 27244] gi|226836759|gb|EEH69142.1| deoxyribodipyrimidine photolyase (photoreactivation) FAD-binding [Acinetobacter sp. ATCC 27244] Length = 476 Score = 337 bits (863), Expect = 3e-90, Method: Compositional matrix adjust. Identities = 191/468 (40%), Positives = 271/468 (57%), Gaps = 18/468 (3%) Query: 10 HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69 L+W R DLRI D+ AL+ A +A+ I +PEQ + H + + F L Q+Q Sbjct: 6 QLIWFRQDLRIHDHAALWHATQT--GPTVALVILSPEQCQLHDDAPIKIDFYLRQLQQLQ 63 Query: 70 KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL-Q 128 +L I + D + + +++ N + +NE++RD ++K L Q Sbjct: 64 IALQSLNIPLIVQHLPLWKDITQLFADLMQNIPIQQVYANIELGVNELKRDNEVQKLLNQ 123 Query: 129 HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188 F D L P SI N + Q Y+V++ F+K Q L Q+ + PVP ++ P+ Sbjct: 124 QNKELVLFHDRTLFPVASIRNQSHQPYQVFSAFKKVCYQRLQQSLPQCYPVPDVQ--QPI 181 Query: 189 TPSNIPRFFDYP---------FQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAI 239 P D+ + +P+GE AL +L +F +++ Y RD PA Sbjct: 182 NIDPYPSLEDFKELQLKYTQQINHLTQQWPVGESYALTLLDQFIHDRLDDYKNARDFPAQ 241 Query: 240 QGTSQLSPYLSIGVLSPRQCWNRL-KEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFY 298 GTSQLS YL+IG LS RQC L +++ D +I+ G +WL+EL+WREFY+H++ Y Sbjct: 242 AGTSQLSAYLNIGTLSIRQCLQALFRKQHGDFVIE-SEGQQTWLDELLWREFYQHILFDY 300 Query: 299 PSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITA 358 P V PF T+KI W D LQ W+QG+TG PI+DA MRQL GWMHNR+RMI A Sbjct: 301 PRVSKHLPFQLSTKKINWCDDPVALQQWQQGHTGIPIVDAGMRQLLATGWMHNRVRMICA 360 Query: 359 SFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRF 418 FL K+LL+DWR GE++FM L+DGDLA+NNGGWQW ASTG D+ PYFRIFNP Q ++F Sbjct: 361 MFLSKNLLIDWRKGEQWFMQHLIDGDLAANNGGWQWCASTGTDAAPYFRIFNPISQSQKF 420 Query: 419 DPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKA 466 DP G ++R W+PEL ++ + IH P+++ K + SLNYP+PIVD K + Sbjct: 421 DPNGDYLRQWIPELAHLDAKSIHEPYAY--KMNSSLNYPIPIVDLKSS 466 >gi|256823595|ref|YP_003147558.1| Deoxyribodipyrimidine photo-lyase [Kangiella koreensis DSM 16069] gi|256797134|gb|ACV27790.1| Deoxyribodipyrimidine photo-lyase [Kangiella koreensis DSM 16069] Length = 459 Score = 335 bits (858), Expect = 1e-89, Method: Compositional matrix adjust. Identities = 191/470 (40%), Positives = 267/470 (56%), Gaps = 24/470 (5%) Query: 8 SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67 +++LVW RNDLR+ DN AL+ A VI +++ EQ H + + FIY S+ + Sbjct: 4 NINLVWFRNDLRVGDNPALFYAAEQ--GAVIGIYLEPVEQREAHDDAPCKIGFIYDSVNE 61 Query: 68 VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127 ++K L++ I + ++ S+E + Q +++N +Y NE RD LEK L Sbjct: 62 LRKKLNKLNIPLHSFKVKDYQQSVEKIVQLVEQYNTDGVYFNNEYPFNERNRDDELEKVL 121 Query: 128 QHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 + K FD V++PP S+ + YKV+TP++K+ I+ + LP+P+ + Sbjct: 122 LGKGKEVKRFDGDVIIPPNSVSTGKGEPYKVFTPYKKSWIEFHKTQGISPLPIPSKQ--- 178 Query: 187 PVTPSNIPRFFDYPF--QAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244 I + DY F ++P GE A L++F K YY E RDIPA++GTS Sbjct: 179 ---DFKIEKQHDYDFGHDYRKDLWPAGELAAQDRLKEFLP-KAGYYKEHRDIPAVKGTSM 234 Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAF---SWLNELIWREFYRHLMAFYPSV 301 LSPYL++G +S +QC L E + + AF +WL+E+IWREFYR ++ P + Sbjct: 235 LSPYLTVGAISAKQCIESLLEWY-----EGDQEAFYLDTWLSEIIWREFYRQIIIDNPQI 289 Query: 302 CMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFL 361 PF +++ WN L + W Q TGFP+IDAAMRQL GWMHNRLRM A FL Sbjct: 290 SYHLPFKKDAKEV-WNGQHELFEKWCQAETGFPLIDAAMRQLIQTGWMHNRLRMNVAMFL 348 Query: 362 VKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQ 421 K L+DWR GE +FM L+DGD ASNNGGWQW +STG D PYFRI +P Q +RFDPQ Sbjct: 349 NKLCLIDWREGEAFFMRHLIDGDFASNNGGWQWCSSTGADGAPYFRIMSPITQSQRFDPQ 408 Query: 422 GTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTL 471 G FIR +PEL ++ + IH P S K L YP PI+D+K+A L Sbjct: 409 GKFIRKLVPELASLNNKDIHFPTSQQRK---ELGYPEPIIDYKEARKAAL 455 >gi|262372026|ref|ZP_06065305.1| deoxyribodipyrimidine photolyase FAD-binding [Acinetobacter junii SH205] gi|262312051|gb|EEY93136.1| deoxyribodipyrimidine photolyase FAD-binding [Acinetobacter junii SH205] Length = 480 Score = 333 bits (854), Expect = 3e-89, Method: Compositional matrix adjust. Identities = 180/480 (37%), Positives = 274/480 (57%), Gaps = 16/480 (3%) Query: 8 SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67 + L+W R DLR+ D AL+ A N IA+ I +PEQW++H + + F LL+ Sbjct: 4 TYQLIWFRQDLRVRDQAALWHARQN--GPCIAICILSPEQWQRHDDADIKIDFYLRQLLE 61 Query: 68 VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127 ++ LS+ I +DD E+ + ++ N ++ NE++RD +++ L Sbjct: 62 LKTELSKLQIPLLIFTVPLWDDIAEFFVDLAEKLPFENVYANIEFGFNELKRDNEVQQSL 121 Query: 128 -QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT- 185 + + F D L P SI + Y+V+ F+K+ Q L + P+P + T Sbjct: 122 NRQKKQLILFQDRTLFPVASIRTQSNLPYQVFGAFKKSCYQRLELGLPQCYPIPETQATL 181 Query: 186 -------GPVTPSNIPRFFDYPFQAIDPM-FPIGEQNALHILRKFCKEKVYYYVEQRDIP 237 NI + + + + +GE++A ++L +F ++++ Y RD P Sbjct: 182 EFDFCQLHQTDLQNIQNHYADKIKDKNASEWRVGEKHARNLLNQFVEKRIIQYNALRDYP 241 Query: 238 AIQGTSQLSPYLSIGVLSPRQCWN-RLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMA 296 +++GTSQLS YL+IG++S RQC + + D +I+ + G +WLNEL+WREFY+H++ Sbjct: 242 SVKGTSQLSAYLNIGIISIRQCIQAAFRHQQGDFVIQSE-GQQTWLNELLWREFYQHILF 300 Query: 297 FYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMI 356 +P V PF T+ ++W DS + WK+G TG PI+DA MRQL + GWMHNR+RMI Sbjct: 301 DFPQVSKHLPFKAATQNVQWRDDSEGFEKWKRGQTGIPIVDAGMRQLLSTGWMHNRVRMI 360 Query: 357 TASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGK 416 A FL K+LL+DWR GE++FM L+DGDLA+NNGGWQW ASTG D+ PYFRIFNP Q + Sbjct: 361 CAMFLTKNLLIDWRKGEQWFMQNLIDGDLAANNGGWQWCASTGTDAAPYFRIFNPISQSQ 420 Query: 417 RFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYA 476 +FD G +IR W+PEL + + IH P++ L L+YP PIVD K + + + A Sbjct: 421 KFDENGVYIRRWVPELTQLDAKRIHEPYA--QNTALKLDYPHPIVDLKTSRERAIQAFQA 478 >gi|331005568|ref|ZP_08328940.1| Deoxyribodipyrimidine photolyase [gamma proteobacterium IMCC1989] gi|330420618|gb|EGG94912.1| Deoxyribodipyrimidine photolyase [gamma proteobacterium IMCC1989] Length = 480 Score = 330 bits (847), Expect = 2e-88, Method: Compositional matrix adjust. Identities = 190/482 (39%), Positives = 269/482 (55%), Gaps = 29/482 (6%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 ++LVWLRNDLR+ DN ALY A H D V+ TPEQWRQH + + L+ V Sbjct: 1 MNLVWLRNDLRLEDNPALYHATHQGD--TCCVYSITPEQWRQHDDAPAKIALWRERLIAV 58 Query: 69 QKSLSQKGIVFQYHQCSNFDDSI------EWLDSYCLQQRVT--KLFYNRQYEINEVRRD 120 Q L + I + + +N ++S LD L R+ +++N +Y +NE +RD Sbjct: 59 QHELREHNIPLKLIRFTNDNESTYSNMPAALLD---LANRIDAHSIYFNNEYPLNEKQRD 115 Query: 121 K-LLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPV 179 + + E + +D V++ PG++ YKV+TPF + + + L + Sbjct: 116 RHVSELFIYEGKQINRYDGDVVMRPGTVKTQQDATYKVFTPFSRQWHKLAGENQLVMVGK 175 Query: 180 PAIRLTGPVTPSNIPR----FFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRD 235 PA + ++ + D P++ ++P + L +F + Y E RD Sbjct: 176 PATQNASLLSLDEDVKTQWLVEDTPYR--QDLWPAKTEAIHQRLHQFAANRASNYKEMRD 233 Query: 236 IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLM 295 IP++ GTS LSPYL+ G +S RQC + +++ + + W+ ELIWREFYRHL+ Sbjct: 234 IPSVNGTSTLSPYLACGAISVRQCISAIRQNVEEWR------SNQWITELIWREFYRHLI 287 Query: 296 AFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRM 355 YP + + FI + I WN D AW +G TG+PI+DAAM+QL GWMHNRLRM Sbjct: 288 DSYPHLSRSENFISLVKPIPWNNDEENFLAWCEGRTGYPIVDAAMKQLVQTGWMHNRLRM 347 Query: 356 ITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQG 415 +TA+FL K LLVDWR GE +FM LLDGD ASNNGGWQWAASTG D+ PYFRIF+P Q Sbjct: 348 VTAAFLTKLLLVDWRKGEAFFMQHLLDGDYASNNGGWQWAASTGADAAPYFRIFSPERQS 407 Query: 416 KRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYY 475 +RFD +G FI+ LPEL ++ + IH P+S K + Y P+VD+K A L +Y Sbjct: 408 ERFDKEGVFIKKLLPELCSLTKKTIHTPNSEQRK---TYGYIEPVVDYKWARQRALEEYA 464 Query: 476 AA 477 A Sbjct: 465 TA 466 >gi|262369609|ref|ZP_06062937.1| deoxyribodipyrimidine photolyase FAD-binding [Acinetobacter johnsonii SH046] gi|262315677|gb|EEY96716.1| deoxyribodipyrimidine photolyase FAD-binding [Acinetobacter johnsonii SH046] Length = 475 Score = 330 bits (847), Expect = 3e-88, Method: Compositional matrix adjust. Identities = 183/468 (39%), Positives = 267/468 (57%), Gaps = 14/468 (2%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 ++++W R DLRI D+ AL+ A + ++A+ I +P+QW H +A + L + Sbjct: 1 MNIIWFRQDLRIHDHAALWHASQH--GPMLALVILSPQQWLLHHDAAVKIDLYVRQLHDL 58 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL- 127 ++SL+Q I + D L S C +V K+F N + +NE++RD +++ L Sbjct: 59 KQSLAQLNIPLLILNIPLWQDIPPQLSSLCHTLQVQKIFANIEMGVNELKRDAEVQQCLN 118 Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIR---L 184 Q + F D L P SI N + + Y+V+ F+K + L + P+P+ + L Sbjct: 119 QQHIEFTLFQDRTLFPLNSIRNQSDKPYQVFGAFKKTCYERLNIGLPQCYPLPSAQQPIL 178 Query: 185 TGPVTPSNIPRFFDY------PFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPA 238 + IP I +P E AL +L F KV Y ++RD P Sbjct: 179 LPADLNAAIPHIESLIHVNTNELNQIKAYWPETEIYALSVLDDFIDHKVSDYQKERDFPF 238 Query: 239 IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFY 298 + TSQLS YL++G++S RQC N L + +G +WL+EL+WREFY+H++ + Sbjct: 239 LNSTSQLSAYLNLGIVSIRQCLNALFRAQHGQFMIDNTGQQTWLDELLWREFYQHILFDF 298 Query: 299 PSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITA 358 P V PF T++I W L AW+QG TG PI+DA MRQL GWMHNR+RMI A Sbjct: 299 PQVSKHLPFKANTQRIVWRDSPEDLNAWQQGRTGIPIVDAGMRQLLATGWMHNRVRMIVA 358 Query: 359 SFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRF 418 FL K+LL+DWR+GE++FM L DGDLA+NNGGWQW ASTG D+VPYFR+FNP Q ++F Sbjct: 359 MFLTKNLLIDWRLGEQWFMQHLADGDLAANNGGWQWCASTGTDAVPYFRVFNPVSQSQKF 418 Query: 419 DPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKA 466 D G +IR WLPEL ++ + IH P++ + ++ L+YP PIVD K + Sbjct: 419 DSNGDYIRQWLPELAHLDAKSIHEPYA--KQQNMELDYPQPIVDLKSS 464 >gi|219847792|ref|YP_002462225.1| deoxyribodipyrimidine photo-lyase [Chloroflexus aggregans DSM 9485] gi|219542051|gb|ACL23789.1| Deoxyribodipyrimidine photo-lyase [Chloroflexus aggregans DSM 9485] Length = 479 Score = 330 bits (846), Expect = 3e-88, Method: Compositional matrix adjust. Identities = 193/495 (38%), Positives = 253/495 (51%), Gaps = 48/495 (9%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M +H W R DLR+ DN AL AA S VI VFI S ++ F+ SL Sbjct: 1 MLIH--WFRRDLRLRDNTALLAAADASGGAVIPVFIFDDAILGGRFASPARTQFLLDSLT 58 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 + L G+ H + + L + + + +NR Y V+RD +++ Sbjct: 59 ALDGELRSLGL----HLVLRRGEPLTTLMALLRESGAHGVTWNRDYTPYAVQRDSTIKRE 114 Query: 127 LQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLR---------- 175 L+ +S+ D+V+ ++ A Q Y VYTP+ K L +R Sbjct: 115 LRAAGYRAESYKDAVIFEMNEVVTAAGQPYTVYTPYAKRWRARLESEPVRVQGVPELTAI 174 Query: 176 ----SLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYV 231 S P+PA+ P P+++PRF GE A L F + Y Sbjct: 175 PLPASDPLPALNDLLPTAPTSVPRF------------ATGETAARAALEHFIHNAIANYA 222 Query: 232 EQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKS-GAFSWLNELIWREF 290 RD+ AI GTS+LSPYL GVLSPRQC V P G SW+ ELIWREF Sbjct: 223 TARDLVAIAGTSRLSPYLRFGVLSPRQC-------VVAARAAPSGPGPESWIGELIWREF 275 Query: 291 YRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMH 350 Y ++ +P G F P ++I W D L AW+QG TG+PI+DAAMRQL GWMH Sbjct: 276 YIQVLYHFPHALRGS-FKPVYDRIVWPNDPALFAAWQQGRTGYPIVDAAMRQLQQEGWMH 334 Query: 351 NRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFN 410 NR RMI ASFL KDLL+DWR GE +FM L+DGD A+NNGGWQWAA TG D+ PYFRIFN Sbjct: 335 NRARMIVASFLTKDLLIDWRWGERHFMHLLIDGDPAANNGGWQWAAGTGTDAQPYFRIFN 394 Query: 411 PTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKN------DLSLNYPLPIVDHK 464 P QG++FDP G ++R ++PEL VPT+YIH PH + +Y P+VDH Sbjct: 395 PVSQGQKFDPDGAYVRRYVPELAGVPTRYIHEPHKMPPSEQVRAGVQIGRDYSAPVVDHA 454 Query: 465 KACHHTLNQYYAAKK 479 L Y +A + Sbjct: 455 TQRLRALELYRSATR 469 >gi|213613247|ref|ZP_03371073.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp. enterica serovar Typhi str. E98-2068] Length = 339 Score = 330 bits (845), Expect = 4e-88, Method: Compositional matrix adjust. Identities = 162/343 (47%), Positives = 227/343 (66%), Gaps = 6/343 (1%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M HLVW R DLR+ DN AL AAC ++ A+V+A++I+TP QW+ H ++ RQ+ FI A L Sbjct: 1 MPTHLVWFRRDLRLQDNLALAAACRDASARVLALYISTPAQWQAHDMAPRQAAFISAQLN 60 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 +Q +L++KGI +H+ ++F+ SIE + + C Q V+ LFYN QYE NE +RD +EK Sbjct: 61 ALQTALAEKGIPLLFHEVADFNASIETVKNVCRQHDVSHLFYNYQYEFNERQRDAAVEKT 120 Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 L VIC+ FDDSV+L PG+++ +MYKV+TPF+ A ++ L + +P P IR++G Sbjct: 121 LP-SVICEGFDDSVILAPGAVMTGNHEMYKVFTPFKNAWLKRLKEDIPPCVPAPKIRVSG 179 Query: 187 PVTPSNIPRFFDYPFQAID-PMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245 ++ P +YP QA D +FP+ E + LR FC + Y +RD PA+ GTS+L Sbjct: 180 ALSIPLTPVSLNYPQQAFDAALFPVEENAVIAQLRHFCSQGADEYASRRDFPAVDGTSRL 239 Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFS-WLNELIWREFYRHLMAFYPSVCMG 304 S L+ G LSPRQC +RL E L G S WLNELIWREFYRHLM +YP++C Sbjct: 240 SASLATGGLSPRQCLHRLLAEQPQAL---DGGPGSVWLNELIWREFYRHLMTWYPALCKH 296 Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIG 347 +PFI WT+++ W ++ H QAW++G TG+PI+DAAMRQLN G Sbjct: 297 QPFIRWTKRVAWQENPHYFQAWQKGETGYPIVDAAMRQLNATG 339 >gi|89094232|ref|ZP_01167174.1| Deoxyribodipyrimidine photolyase [Oceanospirillum sp. MED92] gi|89081487|gb|EAR60717.1| Deoxyribodipyrimidine photolyase [Oceanospirillum sp. MED92] Length = 468 Score = 325 bits (834), Expect = 7e-87, Method: Compositional matrix adjust. Identities = 187/475 (39%), Positives = 267/475 (56%), Gaps = 16/475 (3%) Query: 9 VHLVWLRNDLRITDNKALYAAC-HNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67 + LVW RNDLR D+ ALY AC N+ V+ V I TP QW+ S + F A+L Sbjct: 1 MKLVWFRNDLRTGDHHALYQACMDNTGEGVLGVAIITPVQWKIQDESKSRVQFWRANLES 60 Query: 68 VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDK-LLEKR 126 + L I + + + L + +V+ +++NR+Y + E +RD ++ Sbjct: 61 LSCDLQSLNIPLLILRVPSNREIPALLVELAKRYQVSGVYFNREYPLYEQQRDNAVISAM 120 Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 + V C SFD V+LP G++LN +KV+TPF K Q + ++ + LPVP ++ Sbjct: 121 AEISVPCLSFDSDVVLPAGTVLNQQGLPFKVFTPFSKRWRQQYLTSNPQPLPVPPVQAKL 180 Query: 187 PVTPSNIPRFFDYPFQA----IDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGT 242 ++ ++P+ YP +P G + A +L+ + EKV Y + RD PA GT Sbjct: 181 DISTDSVPKEICYPITVGADWSSERWPAGTEAAHKLLQHYVLEKVADYKQSRDFPAEPGT 240 Query: 243 SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVC 302 S LSPYLS+GVLS RQC ++ F +P+ W+ ELIWREFYRHL+ +P + Sbjct: 241 SSLSPYLSVGVLSTRQCLAAMQAYF----DQPEWFDSQWVTELIWREFYRHLLVLFPEMN 296 Query: 303 MGKPFIPWTE-KIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFL 361 +PF P E K+ W D L QAW +G TGF I+DA M++L GWMHNR+RMITASFL Sbjct: 297 RWEPFKPEVEEKLSWQYDESLFQAWCKGETGFAIVDAGMKELLETGWMHNRVRMITASFL 356 Query: 362 VKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQ 421 K L DWR+G +FM L+DGD ASN GGWQW+AS G D+ PYFRIFNP Q +RFD + Sbjct: 357 TKLLRQDWRLGARFFMQHLIDGDFASNLGGWQWSASVGADAAPYFRIFNPMRQAERFDAK 416 Query: 422 GTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYA 476 G ++ ++P L + + H P S + P PI+D+ ++L+ Y A Sbjct: 417 GRYVGQYVPSLQGLTSVQQHDPMF-----AASYSRPTPIIDYAYERQYSLDAYKA 466 >gi|326794343|ref|YP_004312163.1| deoxyribodipyrimidine photo-lyase [Marinomonas mediterranea MMB-1] gi|326545107|gb|ADZ90327.1| Deoxyribodipyrimidine photo-lyase [Marinomonas mediterranea MMB-1] Length = 497 Score = 324 bits (831), Expect = 2e-86, Method: Compositional matrix adjust. Identities = 186/495 (37%), Positives = 262/495 (52%), Gaps = 31/495 (6%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIA---------------------VFIATP 45 M+ LVWLRNDLR+TD+ ALY A A+ I V TP Sbjct: 1 MATQLVWLRNDLRLTDHPALYGASDMGGAQSITTASEKADSTAASTTTTPDVHIVICMTP 60 Query: 46 EQWRQHGISARQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTK 105 EQW H SA + A + + K QKGI+ + F + L C + Sbjct: 61 EQWCAHSESAAKQSLRVALIDALGKECEQKGIMLHTLHLNTFSECAPALLDLCQSLKCES 120 Query: 106 LFYNRQYEINEVRRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKAL 165 +++ + +E +RD +E+ L + L+ +LN+ +KV+TP+ + Sbjct: 121 IWWQSELPFDEQQRDSQVERLLSEHGVTVHHLAPDLIVSQPLLNNQGTPFKVFTPYYRRW 180 Query: 166 IQNLVQADLRSLPVPAIRLTGPV------TPSNIPRFFDYPFQAIDPMFPIGEQNALHIL 219 I+ L S P + G T NI + + D ++P + L Sbjct: 181 IEILKSNAFYSYPEMPSKAKGTYGDVNHSTAINISNEYFANERYRDDIWPANYAHIKETL 240 Query: 220 RKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAF 279 FC K Y R+IP+ GTS LSPYL++G + PR+ + LK + + + Sbjct: 241 DSFCSLKEADYEAVREIPSTAGTSLLSPYLALGAVGPRELLSALKNGY-QIREEGYWADS 299 Query: 280 SWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAA 339 WL EL WR+FY+ LM +P + M + F P TE+I W+K+ QAW G TGFPI+DAA Sbjct: 300 IWLKELAWRDFYKQLMWHFPRLSMRQAFKPETEQIIWSKNDTHFQAWCDGQTGFPIVDAA 359 Query: 340 MRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTG 399 MRQLN GWMHNRLRMITASFL K L +DWR GE+YFMS+L+DG+ A+NNGGWQW+ASTG Sbjct: 360 MRQLNQTGWMHNRLRMITASFLTKLLFIDWRKGEDYFMSKLIDGEFAANNGGWQWSASTG 419 Query: 400 NDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLP 459 D+VPYFR+FNPT Q + +D G FIR ++PEL+ + + IH+P + YP P Sbjct: 420 CDAVPYFRVFNPTRQSETYDTNGHFIRRFVPELSALSDKEIHSPSV---SHRQQCRYPEP 476 Query: 460 IVDHKKACHHTLNQY 474 I+D+K A H ++ + Sbjct: 477 IIDYKSARKHAIDAF 491 >gi|46107828|ref|XP_380973.1| hypothetical protein FG00797.1 [Gibberella zeae PH-1] Length = 635 Score = 324 bits (830), Expect = 2e-86, Method: Compositional matrix adjust. Identities = 186/488 (38%), Positives = 275/488 (56%), Gaps = 32/488 (6%) Query: 13 WLRNDLRITDNKALYAA---CHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69 W + DLRI+DN+AL A + +IA++I +P+ + H + + F+ +L ++ Sbjct: 146 WFKMDLRISDNRALALASDKAKEAGVPLIALYIISPQDYEAHLRAPVRIDFMLRTLSVIK 205 Query: 70 KSLSQKGI---VFQYHQCSNFDDSI-EWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125 + L++ I V + + D I E +D + + L+ N +YE++E+RR+ + K Sbjct: 206 EDLAKLDIPLYVETVEKRKHLPDRILELMDEWG----ASHLYANMEYEVDELRREAAMIK 261 Query: 126 RLQHRVICKSFD---DSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQA-DLRSL---- 177 K+F+ D+ ++PPG + A + Y VYTP+ K I ++ + DL L Sbjct: 262 DFAEN--GKAFEVVHDTCIVPPGELHTGAGKQYAVYTPWFKTWIAHIHENLDLLELYEPP 319 Query: 178 ---PVPAIRLTGPVTPSNIP------RFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVY 228 P A + + + IP R D + + ++P GE A L KFC+E++ Sbjct: 320 EKNPDSARKKFKKLFNAEIPEAPKSKRLGDEEKERLRSLWPCGEHEAKKRLDKFCEERIG 379 Query: 229 YYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEF-VDLLIKPKSGAFSWLNELIW 287 Y E+R+IPA TS LS +L+ G +S R C ++ L G +W++E+ W Sbjct: 380 NYHEKRNIPADAATSSLSVHLASGTISARTCVRTARDRNKTKKLNGGNDGIQTWISEVAW 439 Query: 288 REFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIG 347 R+FY+H++ +P VCM KPF P I W+ D+ AW +G TGFPI+DAAMRQ+NTIG Sbjct: 440 RDFYKHVLVNWPYVCMNKPFKPEYSNISWSYDNDHFAAWCEGRTGFPIVDAAMRQMNTIG 499 Query: 348 WMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFR 407 +MHNR RMI ASFL KDLL+DWR GE+YFM L+DGD ASNNGGW ++AS G D PYFR Sbjct: 500 YMHNRCRMIVASFLAKDLLLDWRKGEKYFMEHLVDGDFASNNGGWGFSASVGVDPQPYFR 559 Query: 408 IFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSW-LDKNDLSLNYPLPIVDHKKA 466 IFNP +Q ++FDP G +IR W+PEL ++ + IH P++ YP PIV HK Sbjct: 560 IFNPLLQSEKFDPDGDYIRKWVPELKDLDNKAIHDPYNRKAGPQAKKKGYPEPIVTHKDC 619 Query: 467 CHHTLNQY 474 L Y Sbjct: 620 RERALAAY 627 >gi|310798711|gb|EFQ33604.1| DNA photolyase [Glomerella graminicola M1.001] Length = 591 Score = 323 bits (829), Expect = 3e-86, Method: Compositional matrix adjust. Identities = 183/497 (36%), Positives = 267/497 (53%), Gaps = 28/497 (5%) Query: 2 KATTAMSVHLVWLRNDLRITDNKALYAACHNSDAK---VIAVFIATPEQWRQHGISARQS 58 KA + W + DLR DN++L A + +IA+FI +P+ + H + + Sbjct: 90 KAVKPKDAVVHWFKMDLRTADNRSLSLASEKAKEAGVPLIAMFIVSPQDYEAHLTAPIRV 149 Query: 59 HFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVR 118 F+ +L ++ L++ I + + Q + LF N +YE++E+R Sbjct: 150 DFMLRTLHTLRGDLAKLDIPLYVETVEKRKRIPDRIAELMDQWGASHLFANMEYEVDELR 209 Query: 119 RDKLLEKRLQHRVIC-KSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNL-VQADLRS 176 R+ + + R + + D+ ++PPG + + + + Y VYTP+ +A ++++ DL Sbjct: 210 REAKMVRMFADRGLSYEVLHDTCVVPPGQLTSGSGKQYAVYTPWFRAWVRHVHDNLDLLE 269 Query: 177 LPVPAIRLTGPVTPSNIPRFFDY--PFQAID------------PMFPIGEQNALHILRKF 222 L P + P T FD P + D +FP GE A L KF Sbjct: 270 LCHPPAK-NPPSTRDKFNSLFDTDIPSEIADRKLDDEQKKRFRAIFPAGEHEARSRLEKF 328 Query: 223 CKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQC----WNRLKEEFVDLLIKPKSGA 278 C+EKV Y +R+IP GTS LS +L+ G +S R C +R K + +D I+ G Sbjct: 329 CEEKVGQYHNKRNIPHDSGTSNLSVHLASGTISSRTCVRYARDRNKTKKLDAGIE---GI 385 Query: 279 FSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDA 338 W++E+ WR+FY+H++ +P VCM KP+ P IEW+ D +AW G TGFPI+DA Sbjct: 386 RVWISEVAWRDFYKHVLVHWPYVCMNKPYKPEYANIEWSYDMDNFKAWCAGQTGFPIVDA 445 Query: 339 AMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAAST 398 AMRQ++ +GWMHNR RMI A FL KDLL+DWR+GE YFM L+DGD ASNNGGW ++AS Sbjct: 446 AMRQMHAMGWMHNRCRMIVACFLAKDLLIDWRMGERYFMENLIDGDFASNNGGWGFSASV 505 Query: 399 GNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHS-WLDKNDLSLNYP 457 G D PYFRIFNP +Q ++FDP G +IR W+PEL + + IH P+ YP Sbjct: 506 GVDPQPYFRIFNPLLQSEKFDPDGEYIRKWVPELKGITGKAIHDPYGRGAGAQAKKTGYP 565 Query: 458 LPIVDHKKACHHTLNQY 474 IVDHK L Y Sbjct: 566 QQIVDHKGCRERALAAY 582 >gi|309791051|ref|ZP_07685587.1| Deoxyribodipyrimidine photo-lyase [Oscillochloris trichoides DG6] gi|308226906|gb|EFO80598.1| Deoxyribodipyrimidine photo-lyase [Oscillochloris trichoides DG6] Length = 459 Score = 323 bits (828), Expect = 3e-86, Method: Compositional matrix adjust. Identities = 192/477 (40%), Positives = 252/477 (52%), Gaps = 29/477 (6%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M +H W R DLR++DN AL AA S V+ V+I P S +S F+ A L Sbjct: 1 MIIH--WFRRDLRLSDNPALSAAALASGGHVLPVYILDPTLLNGLWASPARSAFLIAGLR 58 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 + L G+ + + L + + + +NR Y RRD+ +E Sbjct: 59 ALDAQLQHHGLRL----IVRHGEPVATLLHLVAETGASAVTWNRDYSPYSRRRDQAIEAA 114 Query: 127 LQHRVIC--KSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL 184 L H C + D + PP IL Y VYTP+ + L ADLR + P ++ Sbjct: 115 L-HAAGCAVQHTHDVAICPPDQILTKNATPYSVYTPYARQWRTWLAHADLRPVAAPILQP 173 Query: 185 TGPVTPSN-IPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS 243 + S+ IP A P+ P GE A IL +F + + Y QRD+PA+ GTS Sbjct: 174 CRDLPVSHAIPDLL-----APHPLPPAGELAAQTILDEFTRTSLRTYATQRDLPAVPGTS 228 Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCM 303 +LSPYL G+++ RQC + P GA +W+ EL WR+FY ++ +P V Sbjct: 229 RLSPYLRFGMIAVRQCLAVAQAH-------PGPGADTWIAELAWRDFYIQVLFHHPHVLR 281 Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363 G F P + + W D L AW G+TG+P++DAAMRQL GWMHNR RMI ASFL K Sbjct: 282 GA-FKPQYDDLAWENDPDLFAAWCAGHTGYPMVDAAMRQLQQEGWMHNRARMIVASFLTK 340 Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423 DLL+DWR GE YFM LLDGD A+NNGGWQWAASTG D+ PYFRIFNPT QG++FDP G Sbjct: 341 DLLIDWRWGERYFMQMLLDGDPAANNGGWQWAASTGTDAQPYFRIFNPTCQGQKFDPHGD 400 Query: 424 FIRHWLPELNNVPTQYIHAPHSWLDKNDLSL------NYPLPIVDHKKACHHTLNQY 474 +IR +LPEL VP IH PH + +YP P+VDH + L Y Sbjct: 401 YIRRYLPELAGVPNHKIHTPHLLSASEQMRAGVRIGHDYPAPLVDHAQRRERALGIY 457 >gi|163849034|ref|YP_001637078.1| deoxyribodipyrimidine photo-lyase [Chloroflexus aurantiacus J-10-fl] gi|222527000|ref|YP_002571471.1| deoxyribodipyrimidine photo-lyase [Chloroflexus sp. Y-400-fl] gi|163670323|gb|ABY36689.1| Deoxyribodipyrimidine photo-lyase [Chloroflexus aurantiacus J-10-fl] gi|222450879|gb|ACM55145.1| Deoxyribodipyrimidine photo-lyase [Chloroflexus sp. Y-400-fl] Length = 479 Score = 323 bits (828), Expect = 4e-86, Method: Compositional matrix adjust. Identities = 191/498 (38%), Positives = 257/498 (51%), Gaps = 50/498 (10%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M +H W R DLR+ DN AL AA + V+ VFI R S ++ F+ L Sbjct: 1 MYIH--WFRRDLRLRDNTALMAAATAAGGAVVPVFIFDDAILRGRFASPARTQFLLDCLA 58 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 + L G+ H D + L + + + +NR Y VRRD +++ Sbjct: 59 ALDAELRTFGL----HLVVRRGDPLRTLFDVLRESGASGVTWNRDYTPYAVRRDTAIKQA 114 Query: 127 LQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185 L+ SF D+V+ + + Y VYTP+ K L Sbjct: 115 LREAGYEAHSFKDTVIFEMKEVATADGRPYTVYTPYAKRWRSRLAAE------------- 161 Query: 186 GPVTPSNIPRFFDYPFQAIDPM----------------FPIGEQNALHILRKFCKEKVYY 229 PVT ++PR P +P+ FP GE AL L +F + + Sbjct: 162 -PVTVQDMPRLATIPLPVSEPLPHLTDLLPDAPATLPRFPAGEAVALEALERFVRGPLAS 220 Query: 230 YVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWRE 289 Y + RD+ A+ GTS+LSPYL +GVLSPRQC + SW+ ELIWR+ Sbjct: 221 YAQGRDLMAVAGTSRLSPYLRLGVLSPRQCVAAALAAPPGPGPE------SWIGELIWRD 274 Query: 290 FYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWM 349 FY ++ +P G F P +I+W D L AW+QG TG+PI+DAAMRQL GWM Sbjct: 275 FYVQVLYHFPHALRGS-FKPAYNRIDWPNDPVLFAAWQQGLTGYPIVDAAMRQLQREGWM 333 Query: 350 HNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIF 409 HNR RMI ASFL KDLL+DWR GE +FM L+DGD A+NNGGWQWAA TG D+ P+FRIF Sbjct: 334 HNRARMIVASFLTKDLLIDWRWGERHFMHLLIDGDPAANNGGWQWAAGTGTDAQPFFRIF 393 Query: 410 NPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPH--SWLDKNDLSL----NYPLPIVDH 463 NP QG++FDP+G ++R ++PEL NVPT+YIH PH S ++ + +YP PIVDH Sbjct: 394 NPVSQGQKFDPEGAYVRRYVPELVNVPTRYIHEPHKMSLAEQRKAGVLIGRDYPAPIVDH 453 Query: 464 KKACHHTLNQYYAAKKQS 481 L Y AA + + Sbjct: 454 ATQRTKALELYRAATRHN 471 >gi|88800847|ref|ZP_01116402.1| putative deoxyribodipyrimidine photolyase [Reinekea sp. MED297] gi|88776420|gb|EAR07640.1| putative deoxyribodipyrimidine photolyase [Reinekea sp. MED297] Length = 465 Score = 322 bits (824), Expect = 1e-85, Method: Compositional matrix adjust. Identities = 180/476 (37%), Positives = 273/476 (57%), Gaps = 27/476 (5%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAK---VIAVFIATPEQWRQHGISARQSHFIYASL 65 LVW RNDLR++D++AL+ A + + + V A+F + QWR HG + +++L Sbjct: 2 TQLVWFRNDLRVSDHEALFQALNRAKQQQTPVRALFFWSDAQWRSHGAGDAKIAATFSAL 61 Query: 66 LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125 + + L++ GI S + + E + +YC ++T + Y+ + NE+RRD + + Sbjct: 62 QALHQKLAKLGIPLDVLSVSWWTECAEQMVNYCQSHQITAIHYHTEPGWNELRRDDRVAQ 121 Query: 126 RLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLP----VPA 181 +L V + D + P L Q+YKV+T ++K+L++ L + P PA Sbjct: 122 QLSKSVELHRYHDLYFIDPAHHLTQQGQVYKVFTAYKKSLLRQFSIDHLATFPPRKAGPA 181 Query: 182 IRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQG 241 ++++ P+ ++P + + P Q P+ E AL L FC+E V Y ++RD PA G Sbjct: 182 LKVS-PLAMKDLPNWQN-PLQ-----LPVTEDQALTRLDAFCEE-VRDYADRRDFPADNG 233 Query: 242 TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSV 301 TSQLS L++G S RQ + L + L + ++ +E+IWR+FY++L+ P + Sbjct: 234 TSQLSAALALGCTSSRQVAHTLHRHHISL------ASDTFFSEIIWRDFYKYLLFHTPRL 287 Query: 302 CMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFL 361 C+G+P+ + W K+ L+ W++G TG PI+DAAMRQL GWMHNRLRM+T +L Sbjct: 288 CLGEPYNEKWDAFPWQKNETWLERWREGKTGVPIVDAAMRQLRETGWMHNRLRMVTGMYL 347 Query: 362 VKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQ 421 VK L DWR GE +F L D D A+NNGGWQW ASTG D+VPYFRIFNP Q KRFDP Sbjct: 348 VKILQQDWRQGEAWFAEHLADFDFAANNGGWQWVASTGVDAVPYFRIFNPYQQSKRFDPN 407 Query: 422 GTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSL-NYPLPIVDHKKACHHTLNQYYA 476 G FI ++ ELN+V +H K LS+ +YP P+ D+ KA TL+++ A Sbjct: 408 GQFILTFVTELNDVKPALLHD-----HKRALSVSSYPKPLTDYSKARQDTLDKFKA 458 >gi|126642518|ref|YP_001085502.1| deoxyribodipyrimidine photolyase (photoreactivation) FAD-binding [Acinetobacter baumannii ATCC 17978] Length = 381 Score = 321 bits (823), Expect = 1e-85, Method: Compositional matrix adjust. Identities = 171/372 (45%), Positives = 231/372 (62%), Gaps = 13/372 (3%) Query: 106 LFYNRQYEINEVRRDKLLEKRL-QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKA 164 ++ N + +NE++RDK ++ L +H F D + P SI N + Q Y+V++ F+KA Sbjct: 1 MYANIEIGVNELKRDKTVQDYLNRHGKELFLFHDRTIFPLRSIRNQSQQPYQVFSAFKKA 60 Query: 165 LIQNLVQADL-RSLPVPAIRLTGP--------VTPSNIPRFFDYPF-QAIDPMFPIGEQN 214 L + L + PVP + P + I + F + ++P+GEQ Sbjct: 61 CYTKLDTSGLPQCYPVPNKQNEVPLDFLQGKNIDLDEIEKLFCSSLSKEQQDLWPVGEQY 120 Query: 215 ALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKP 274 AL L +F +E V +Y +RD P IQ TS+LSPYL+IG+LS RQC L Sbjct: 121 ALEQLDQFIEESVCHYKVERDFPNIQATSKLSPYLNIGILSIRQCLQALFRNQHGNFHLV 180 Query: 275 KSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFP 334 G +WL+EL+WREFY+H++ +P V PF T+KI+WN + L AW+ G TG P Sbjct: 181 NEGQQTWLDELLWREFYQHILFDFPHVSKHIPFKKDTQKIKWNHNPEHLTAWQMGQTGIP 240 Query: 335 IIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQW 394 I+DA MRQL GWMHNR+RMITA FL K+LL+DWRIGE++FM L+DGDLA+NNGGWQW Sbjct: 241 IVDAGMRQLLQTGWMHNRVRMITAMFLCKNLLIDWRIGEQWFMQHLIDGDLAANNGGWQW 300 Query: 395 AASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSL 454 ASTG D+VPYFRIFNP Q K+FDP+G +IR W+ EL ++ + IH P+S K DL L Sbjct: 301 CASTGTDAVPYFRIFNPITQSKKFDPEGEYIRQWVKELAHLDNKTIHEPYS--SKTDLGL 358 Query: 455 NYPLPIVDHKKA 466 NYP PIVD K+ Sbjct: 359 NYPKPIVDLKET 370 >gi|115396894|ref|XP_001214086.1| deoxyribodipyrimidine photo-lyase [Aspergillus terreus NIH2624] gi|114193655|gb|EAU35355.1| deoxyribodipyrimidine photo-lyase [Aspergillus terreus NIH2624] Length = 583 Score = 321 bits (822), Expect = 2e-85, Method: Compositional matrix adjust. Identities = 181/498 (36%), Positives = 270/498 (54%), Gaps = 25/498 (5%) Query: 5 TAMSVHLVWLRNDLRITDNKALYAACH---NSDAKVIAVFIATPEQWRQHGISARQSHFI 61 A VH W ++DLR+ DN+AL+ A + +I ++I +PE H S + Sbjct: 90 NAAVVH--WFKSDLRLHDNRALHKAAQVAREHNLPLIGLYILSPEDLTAHLSSPARVDLT 147 Query: 62 YASLLQVQKSLSQKGIVFQYHQCSNFDDSI-EWLDSYCLQQRVTKLFYNRQYEINEVRRD 120 +L Q+Q+ L++ I Y + +I + C + LF N +YE++E+RR+ Sbjct: 148 LRTLAQLQRDLNESDIPL-YMETQERRQAIPARIVELCQKWGANHLFANLEYEVDELRRE 206 Query: 121 -KLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQ-------- 171 +L+ ++ + + D+ ++PPGS+ + + Y VY+P+ +A + L + Sbjct: 207 ARLIRLCAKNGIRFDALHDTCVVPPGSLSSQQGKQYAVYSPWYRAWVAFLKENPDYLEVS 266 Query: 172 -------ADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCK 224 D R P P+N + D + + ++P GE ALH L F K Sbjct: 267 EEPGANSGDARKHFAELFDSEVPQAPAN-KQLSDSQKEHLSALYPAGEHEALHRLETFLK 325 Query: 225 EKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNE 284 EK Y E R+I A Q TS LSPY + G LS R + + +LL + + G SW++E Sbjct: 326 EKAVEYDEDRNILAGQHTSVLSPYFASGSLSARTAVVQARRANKNLLDRNEPGYMSWISE 385 Query: 285 LIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLN 344 + WR+FY+H++ +P +CM K F P +EW D QAW +G TG P++DAAMRQLN Sbjct: 386 VAWRDFYKHVLVQWPFICMNKCFKPEFTDLEWEYDEIKFQAWCEGRTGVPVVDAAMRQLN 445 Query: 345 TIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVP 404 WMHNR RMI +S+L KDLL+DWR GE YFM L+DGD ASN+GGW + +STG D P Sbjct: 446 HDAWMHNRARMIVSSYLSKDLLIDWRRGERYFMEHLIDGDFASNHGGWGFGSSTGVDPQP 505 Query: 405 YFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSL-NYPLPIVDH 463 YFRIFNP Q +RFD +G +IRHW+PEL + IH P+ + YP +VDH Sbjct: 506 YFRIFNPLRQSERFDAEGEYIRHWVPELQGIEGAAIHDPYGRGAGDQAGRQGYPHALVDH 565 Query: 464 KKACHHTLNQYYAAKKQS 481 ++ + L +Y A ++ Sbjct: 566 SQSRNRALERYKRASQKE 583 >gi|119497467|ref|XP_001265492.1| deoxyribodipyrimidine photo-lyase Phr1, putative [Neosartorya fischeri NRRL 181] gi|119413654|gb|EAW23595.1| deoxyribodipyrimidine photo-lyase Phr1, putative [Neosartorya fischeri NRRL 181] Length = 584 Score = 320 bits (821), Expect = 2e-85, Method: Compositional matrix adjust. Identities = 182/501 (36%), Positives = 267/501 (53%), Gaps = 23/501 (4%) Query: 2 KATTAMSVHLVWLRNDLRITDNKAL---YAACHNSDAKVIAVFIATPEQWRQHGISARQS 58 +A A + + W ++DLR+ DN+AL Y + +IA++I +P+ H +S + Sbjct: 85 RAIRANNAVVYWFKSDLRLYDNRALRLAYETAKEHNIPLIALYILSPQDLTAHLLSPARV 144 Query: 59 HFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSI-EWLDSYCLQQRVTKLFYNRQYEINEV 117 I +L Q+++ LS+ I Y + +I + + C Q L+ N +YE++E+ Sbjct: 145 DLILRTLHQLKRDLSELDIPL-YLETQEIRKNIPQRIVDLCQQWGANHLYANLEYEVDEL 203 Query: 118 RRD-KLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQ----- 171 RR+ KL+ ++ + + D+ ++PPG + + + Y VY+P+ + + L + Sbjct: 204 RREAKLVRLCAKNGIKFDTAHDACVVPPGQVTSQQGKQYAVYSPWYRTWLAYLNENPDCL 263 Query: 172 ----------ADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRK 221 D R P P N + + Q + ++P GE AL L Sbjct: 264 ELSEEPGSNPGDARKYFKELFDSEVPAAPEN-KQLSEEEKQHLGQLYPAGEHEALRRLEA 322 Query: 222 FCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSW 281 F +EKV Y E R++ + Q TS LSPY + G+LS R + L G W Sbjct: 323 FLEEKVRDYAEARNMVSGQTTSILSPYFASGLLSARTAIEHARRANKGSLQHGDPGLVHW 382 Query: 282 LNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMR 341 + E+ WREFYRH++ +PS+CM K F P +EW D W +G TGFPI+DAAMR Sbjct: 383 IGEVAWREFYRHVLVHWPSICMNKCFKPEFTNLEWEYDEDRFTTWCEGKTGFPIVDAAMR 442 Query: 342 QLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGND 401 Q+ WMHNR RMI ASFL KDLL+DWR GE YFM L+DGD ASN+GGW + +STG D Sbjct: 443 QVKQDKWMHNRTRMIVASFLSKDLLIDWRRGERYFMETLIDGDFASNHGGWGFGSSTGVD 502 Query: 402 SVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLN-YPLPI 460 PYFRIFNP Q +RFDP G +IR W+PEL ++ IH P++ + N YP P+ Sbjct: 503 PQPYFRIFNPLRQSERFDPDGEYIRKWVPELRDIKEAAIHEPYARGAGANAEKNGYPRPM 562 Query: 461 VDHKKACHHTLNQYYAAKKQS 481 VDH K+ L++Y A K Sbjct: 563 VDHSKSRDLALHRYKRACKNG 583 >gi|315046714|ref|XP_003172732.1| deoxyribodipyrimidine photo-lyase [Arthroderma gypseum CBS 118893] gi|311343118|gb|EFR02321.1| deoxyribodipyrimidine photo-lyase [Arthroderma gypseum CBS 118893] Length = 589 Score = 319 bits (818), Expect = 5e-85, Method: Compositional matrix adjust. Identities = 179/484 (36%), Positives = 262/484 (54%), Gaps = 19/484 (3%) Query: 13 WLRNDLRITDNKAL---YAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69 W + DLR+ DN++L Y+ + + +I ++I +PE H S + + +L ++ Sbjct: 102 WFKQDLRLQDNRSLHRAYSLARSHNIPLICLYIFSPEDLTAHLCSRPRVDLMLRTLATLK 161 Query: 70 KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH 129 L++K I + + C + +F N +YE++E+RR+ L + Sbjct: 162 SELAKKDIPLYMESQEKRKEIPSRIVELCKKWGAKHIFANLEYEVDELRREARLVRLCAE 221 Query: 130 RVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQA----DLRSLPVP---- 180 + I + DD+ ++ PG++ + Y VYTP+ ++ + L Q DL P Sbjct: 222 QAIKFATEDDTCVVDPGALATQQGKQYAVYTPWYRSWVAYLKQHPENLDLVDAPGANAGD 281 Query: 181 AIRLTGPVTPSNIPRFFD------YPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQR 234 A + + S++P+ D Q M+P GE A+ LRKF EK Y ++R Sbjct: 282 ARKDFKDLFDSDVPKAPDQMKLSETEQQRFRDMYPEGEHEAMQRLRKFLSEKGRQYHDKR 341 Query: 235 DIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHL 294 D + Q TS LSPY S G LS R K+ + L +G +W++E+ WR+FY+H+ Sbjct: 342 DFMSSQSTSVLSPYFSCGALSARTAVRIAKDTNSNELAGKNAGYTTWISEVAWRDFYKHV 401 Query: 295 MAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLR 354 + +P +CM K F P +EW D AW +G TGFPI+DAAMRQL WMHNR R Sbjct: 402 LVHWPFICMNKCFKPEFTDLEWEYDLTQFDAWCEGRTGFPIVDAAMRQLKHCAWMHNRTR 461 Query: 355 MITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQ 414 MI +SFL KDLL+DWR GE++FM L+DGD ASNNGGW + +STG D PYFRIFNP Q Sbjct: 462 MIVSSFLSKDLLIDWRRGEQFFMLHLIDGDFASNNGGWGFGSSTGVDPQPYFRIFNPLRQ 521 Query: 415 GKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLN-YPLPIVDHKKACHHTLNQ 473 +RFDP G +IRHW+PEL +V IH P+ + N YP PIV+H ++ L + Sbjct: 522 SERFDPDGDYIRHWVPELRDVEGSAIHDPYGRGAQKIAEKNGYPKPIVNHSESRGKALER 581 Query: 474 YYAA 477 Y A Sbjct: 582 YKKA 585 >gi|171694686|ref|XP_001912267.1| hypothetical protein [Podospora anserina S mat+] gi|170947585|emb|CAP59746.1| unnamed protein product [Podospora anserina S mat+] Length = 734 Score = 319 bits (817), Expect = 7e-85, Method: Compositional matrix adjust. Identities = 179/495 (36%), Positives = 268/495 (54%), Gaps = 23/495 (4%) Query: 2 KATTAMSVHLV-WLRNDLRITDNKALYAACHNSDAK---VIAVFIATPEQWRQHGISARQ 57 +A T ++ +V W + DLR TDN AL+ A + A +IA++I +P+ + H + + Sbjct: 233 RANTPVAGAVVHWFKMDLRTTDNTALFCASQKAQAAGVPLIALYILSPQDFEAHLTAPVR 292 Query: 58 SHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEV 117 F+ +L ++K L+ I + + + + LF N +YE++E+ Sbjct: 293 VDFMLRTLEILKKDLAALDIPLWVETVKKRKEIPSRIVELMGEWGASHLFANMEYEVDEL 352 Query: 118 RRDKLLEKRLQHR-VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRS 176 RRD + + L R ++ D+ ++PPG + + + Y VYTP+ + +++ V +L Sbjct: 353 RRDARMARLLAKRGLVMDVLHDTCIVPPGRLTSGSGGQYAVYTPWFRTWVRH-VHENLDL 411 Query: 177 LPVPAIRLTGP-VTPSNIPRFFDYPF--------------QAIDPMFPIGEQNALHILRK 221 L + P T + F+ P + ++P GE A+ L K Sbjct: 412 LELVESPTKNPESTRQKLAHLFECPIPSAPENKTLSKEDRERFRALWPAGEHEAMKRLSK 471 Query: 222 FCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLK-EEFVDLLIKPKSGAFS 280 F + + Y + R+IP+ GTS LS + + G LS R + L G + Sbjct: 472 FADQAIGKYQQNRNIPSNPGTSSLSVHFASGTLSARTAVRTARGRNNTKKLDGGNEGIQT 531 Query: 281 WLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAM 340 W+ E+ WR+FY+H++ +P +CM KPF P IEW+ + AWK+G TGFPI+DAAM Sbjct: 532 WIREVAWRDFYKHVLVQWPYICMNKPFKPEYANIEWSYNMEHFDAWKEGRTGFPIVDAAM 591 Query: 341 RQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGN 400 RQL ++GW+HNR RMI ASFL KDLL+DWR+GE+YFM L+DGD ASNNGGW ++AS G Sbjct: 592 RQLRSMGWVHNRCRMIVASFLCKDLLLDWRMGEKYFMEHLVDGDFASNNGGWGFSASVGV 651 Query: 401 DSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHS-WLDKNDLSLNYPLP 459 D PYFRIFNP +Q ++FDP G +IR W+PEL V + IH P+ + YP Sbjct: 652 DPQPYFRIFNPLLQSEKFDPDGEYIRKWVPELKEVKGKAIHDPYGRGAAALAIKAGYPKH 711 Query: 460 IVDHKKACHHTLNQY 474 IVDHK A TL Y Sbjct: 712 IVDHKGARERTLAAY 726 >gi|320585730|gb|EFW98409.1| deoxyribodipyrimidine photo-lyase [Grosmannia clavigera kw1407] Length = 584 Score = 318 bits (816), Expect = 1e-84, Method: Compositional matrix adjust. Identities = 175/490 (35%), Positives = 264/490 (53%), Gaps = 25/490 (5%) Query: 13 WLRNDLRITDNKALYAACHNS---DAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69 W ++DLR DN+AL A + +I +++ +P+ W H + + F+ +L +Q Sbjct: 91 WFKSDLRTLDNRALAMASEKAQMAGVPLIGLYVVSPQDWEAHLTAPVRVDFVLRTLAVLQ 150 Query: 70 KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH 129 + L++ GI + S + LF N +YE++E+RR+ + ++ Sbjct: 151 RDLAELGIPLWMETVEQRKQIPHRILSLMDKWGANHLFANMEYEVDELRRETAMVRQCAA 210 Query: 130 RVICKSF-DDSVLLPPGSILNHAL-QMYKVYTPFRKALIQNLVQADLRSLPV-------- 179 + + D ++PPG++ + + + Y VYTP+ +A Q++ + P+ Sbjct: 211 QGKSMAVVHDICVVPPGNLTSKSSGKAYAVYTPWFRAWKQHVYTNEHILGPIDNPKTQAK 270 Query: 180 -----PAIRLTGPVTPSNIPRFFDYPFQA--IDPMFPIGEQNALHILRKFCKEKVYYYVE 232 PA + P+ + + +A ++P GE A+ L FC E+V Y + Sbjct: 271 TKTRWPAELMDCPIPSAPKGKTLGTKAEAKRFCTLWPAGEHEAMRRLEHFCDERVADYSD 330 Query: 233 QRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFS-WLNELIWREFY 291 +RD PA++ TS LSPYL+ GVLS R ++ + + F W++E+ WR+FY Sbjct: 331 ERDFPAVEATSSLSPYLAAGVLSARTVIRTARDRTGAKTLDDGTEGFRVWISEVSWRDFY 390 Query: 292 RHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHN 351 RH++ +P VC KPF I W+ + AW +G TG+PI+DAAMRQLN GW+HN Sbjct: 391 RHILVAWPHVCFNKPFKLAYSGIAWSYNHDHFTAWTEGRTGYPIVDAAMRQLNKQGWLHN 450 Query: 352 RLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNP 411 R RMI ASFL KDLL+DWR+GE YFM L+DGD ASN+GGW ++AS G D PYFRIFNP Sbjct: 451 RCRMIVASFLAKDLLLDWRLGERYFMEHLVDGDFASNSGGWGFSASVGVDPQPYFRIFNP 510 Query: 412 TIQGKRFDPQGTFIRHWLPELNN---VPTQYIHAPHS-WLDKNDLSLNYPLPIVDHKKAC 467 +Q +RFDP GT+IR W+PEL + + IH P+ + YP PIV HK+A Sbjct: 511 ILQSERFDPDGTYIRRWVPELQDSGIADNKAIHEPYGRGFGDQARAAGYPEPIVQHKQAR 570 Query: 468 HHTLNQYYAA 477 L Y A Sbjct: 571 EAALEAYKKA 580 >gi|302404190|ref|XP_002999933.1| deoxyribodipyrimidine photo-lyase [Verticillium albo-atrum VaMs.102] gi|261361435|gb|EEY23863.1| deoxyribodipyrimidine photo-lyase [Verticillium albo-atrum VaMs.102] Length = 589 Score = 318 bits (814), Expect = 2e-84, Method: Compositional matrix adjust. Identities = 177/491 (36%), Positives = 266/491 (54%), Gaps = 26/491 (5%) Query: 6 AMSVHLVWLRNDLRITDNKALYAACHNS-DAKV--IAVFIATPEQWRQHGISARQSHFIY 62 A VH W + DLR++DN +L A + DA V IA++I +P+ + H + + F Sbjct: 94 AAVVH--WFKMDLRLSDNTSLRLASERAKDAGVPLIAMYIISPQDFEAHLTAPIRVDFTL 151 Query: 63 ASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKL 122 +L ++ L++ I + + + T LF N +YE++E+RR+ Sbjct: 152 RTLEILKHDLAKLDIPLHIETVEKRRQISDRIVELMGEWGATHLFANMEYEVDELRREAK 211 Query: 123 LEKRLQHRVIC-KSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLR------ 175 L + + + ++ D+ ++PPG + + Y VYTP+ ++ ++++ + R Sbjct: 212 LVRTFADKGMSFEAVHDTCVVPPGQLQTGTGKQYAVYTPWYRSWMRHVHENPDRLELFDH 271 Query: 176 --SLPVPAIRLTGPVTPSNIPRFFDYPFQAIDP--------MFPIGEQNALHILRKFCKE 225 P A G + S IP + P + + +FP GE A L KFC Sbjct: 272 PNKNPSSAKERFGNLFASEIPE--EVPNKTLGAEEKKRFRALFPAGEHAARERLDKFCDG 329 Query: 226 KVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAF-SWLNE 284 + Y ++R+IP GTS LS +L+ G +S R C ++ + +G +W++E Sbjct: 330 SISSYADRRNIPGDNGTSSLSMHLASGTISSRTCVRTARDRNKTKKLDGGNGGIQTWISE 389 Query: 285 LIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLN 344 + WR+FY+H++ +P VCM KPF P IEW+ + +AW +G TGFPI+DAAMRQ+ Sbjct: 390 VAWRDFYKHVLVHWPYVCMNKPFKPEYANIEWSYEKDDFKAWCEGKTGFPIVDAAMRQMI 449 Query: 345 TIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVP 404 +GWMHNR RMI ASFL KDLL+DWR+GE +FM L+DGD ASNNGGW ++AS G D P Sbjct: 450 HVGWMHNRCRMIVASFLCKDLLIDWRMGERFFMEHLVDGDFASNNGGWGFSASVGVDPQP 509 Query: 405 YFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHS-WLDKNDLSLNYPLPIVDH 463 YFRIFNP +Q ++FDP G +IR W+PEL V + IH P+ YP PIV H Sbjct: 510 YFRIFNPLLQSEKFDPDGEYIRKWVPELAGVKGKAIHDPYGRGAGPQAKKKGYPEPIVAH 569 Query: 464 KKACHHTLNQY 474 K L +Y Sbjct: 570 KDVRERALTEY 580 >gi|70990122|ref|XP_749910.1| deoxyribodipyrimidine photo-lyase Phr1 [Aspergillus fumigatus Af293] gi|66847542|gb|EAL87872.1| deoxyribodipyrimidine photo-lyase Phr1, putative [Aspergillus fumigatus Af293] gi|159130392|gb|EDP55505.1| deoxyribodipyrimidine photo-lyase Phr1, putative [Aspergillus fumigatus A1163] Length = 586 Score = 316 bits (810), Expect = 5e-84, Method: Compositional matrix adjust. Identities = 177/500 (35%), Positives = 272/500 (54%), Gaps = 21/500 (4%) Query: 2 KATTAMSVHLVWLRNDLRITDNKAL---YAACHNSDAKVIAVFIATPEQWRQHGISARQS 58 +A A S + W ++DLR+ DN+AL Y + +I ++I +P+ H +S + Sbjct: 87 RAIGANSAVVFWFKSDLRLYDNRALRMAYETAKGCNIPLIGLYILSPQDLTAHLLSPARV 146 Query: 59 HFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSI-EWLDSYCLQQRVTKLFYNRQYEINEV 117 I +L Q+++ LS+ I Y + +I + + C Q L+ N +YE++E+ Sbjct: 147 DLILRTLHQLKRDLSELDIPL-YMETQEIRKNIPQRIVDLCQQWGANHLYANLEYEVDEL 205 Query: 118 RRD-KLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNL------- 169 RR+ KL+ ++ + ++ D+ ++PPG + + + Y VY+P+ + + L Sbjct: 206 RREAKLVRLCAKNGIKFETAHDACVVPPGQVTSQQGKQYAVYSPWYRTWVAYLNENPGCL 265 Query: 170 -VQADLRSLPVPAIRLTGPVTPSNIP------RFFDYPFQAIDPMFPIGEQNALHILRKF 222 V + S P A + + S +P + + Q + ++P GE AL L F Sbjct: 266 EVSEEPGSNPGDARKYFKELFESEVPAAPEHKQLSEEEKQHLGHLYPAGEHEALRRLEAF 325 Query: 223 CKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWL 282 +EK Y E+R++ + Q TS LSPY + G+LS R + L G W+ Sbjct: 326 LEEKGRDYAEERNMVSGQTTSILSPYFASGLLSARTAIEHARRANKGSLQHGDPGLVRWI 385 Query: 283 NELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQ 342 E+ WREFYRH++ +P +CM K F P +EW + AW++G TGFPI+DAAMRQ Sbjct: 386 GEVAWREFYRHVLVHWPFICMNKCFKPEFTNLEWEYEEDRFTAWREGKTGFPIVDAAMRQ 445 Query: 343 LNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDS 402 WMHNR RMI ASFL KDLL+DWR GE YFM L+DGD ASN+GGW + +STG D Sbjct: 446 AKQDKWMHNRTRMIVASFLSKDLLLDWRRGERYFMETLIDGDFASNHGGWGFGSSTGVDP 505 Query: 403 VPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLN-YPLPIV 461 PYFRIFNP +Q +RFDP G +IR W+PEL ++ IH P++ + N YP P++ Sbjct: 506 QPYFRIFNPLLQSERFDPDGEYIRKWVPELRDIQGAAIHEPYARGGGAIAAKNGYPRPML 565 Query: 462 DHKKACHHTLNQYYAAKKQS 481 +H ++ L++Y A + Sbjct: 566 NHSQSRDLALHRYKRASESG 585 >gi|255950764|ref|XP_002566149.1| Pc22g22550 [Penicillium chrysogenum Wisconsin 54-1255] gi|211593166|emb|CAP99543.1| Pc22g22550 [Penicillium chrysogenum Wisconsin 54-1255] Length = 581 Score = 316 bits (810), Expect = 5e-84, Method: Compositional matrix adjust. Identities = 179/498 (35%), Positives = 266/498 (53%), Gaps = 21/498 (4%) Query: 2 KATTAMSVHLVWLRNDLRITDNKALYAA---CHNSDAKVIAVFIATPEQWRQHGISARQS 58 ++ S + W ++DLR+ D++ALYAA +I +++ +PE W H S + Sbjct: 85 RSINVGSAVVHWFKSDLRLHDSRALYAAYQFAKEHQVPLIGLYVVSPEDWTAHSTSPARV 144 Query: 59 HFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSI-EWLDSYCLQQRVTKLFYNRQYEINEV 117 F +L ++Q+ L + I Y + + +I + C Q L+ N +YE++E+ Sbjct: 145 DFTLRTLKRLQQDLGELDIPL-YMETQDKRKTIPNRIVELCQQWGAKSLYANIEYEVDEL 203 Query: 118 RRD-KLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNL------- 169 RR+ KL+ + + D+ ++ PG++ + + Y VYTP+ ++ + L Sbjct: 204 RREAKLVRLCADNDINFTPSHDTCVVTPGALASQQGKQYSVYTPWYRSWLAFLKENPDYL 263 Query: 170 -VQADLRSLPVPAIRLTGPVTPSNIPR------FFDYPFQAIDPMFPIGEQNALHILRKF 222 V + S P A + N+P D + + ++P GE AL L F Sbjct: 264 EVSEEPGSNPGNARQQFKDFFDCNVPAAPNTHILLDEEQKRFEGLYPAGEHEALQRLDNF 323 Query: 223 CKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWL 282 +EK Y E R + + + TS LSPY + G LS R K + + G +W+ Sbjct: 324 LEEKGKEYEETRSMLSGESTSVLSPYFACGALSARTAVATAKRINKGHIDRYNPGYMTWI 383 Query: 283 NELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQ 342 +EL WR+FY+H++ +P +CM K F P IEW D QAW G TGFPI+DAAMRQ Sbjct: 384 SELAWRDFYKHVLVNWPFICMNKCFKPEHTNIEWEYDKDQFQAWCDGKTGFPIVDAAMRQ 443 Query: 343 LNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDS 402 L WMHNR RM+ +SF KDL++DWR GE YFM L+DGD ASN+GGW + +STG D Sbjct: 444 LRHCAWMHNRTRMVVSSFFTKDLMLDWRRGERYFMENLIDGDFASNHGGWGFGSSTGVDP 503 Query: 403 VPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLN-YPLPIV 461 PYFRIFNP Q +RFDP+G +I+HWLPEL +V + IH P++ N YP PIV Sbjct: 504 QPYFRIFNPLRQSERFDPEGEYIQHWLPELRDVSGKAIHEPYARGAAEIAQKNGYPRPIV 563 Query: 462 DHKKACHHTLNQYYAAKK 479 DH ++ L ++ A K Sbjct: 564 DHAESRDRALERFKKALK 581 >gi|3947746|emb|CAA08916.1| DNA photolyase [Trichoderma atroviride] Length = 629 Score = 315 bits (808), Expect = 9e-84, Method: Compositional matrix adjust. Identities = 177/483 (36%), Positives = 265/483 (54%), Gaps = 22/483 (4%) Query: 13 WLRNDLRITDNKALY---AACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69 W + DLR +DN++L A + +I V+I +P+ + H S + F+ +L ++ Sbjct: 140 WFKMDLRHSDNRSLALASAKAKEAGVPLICVYIISPQDFEAHLTSPVRVDFMLRTLSVLK 199 Query: 70 KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD-KLLEKRLQ 128 L+ I D + + LF N +YE++E+RR+ +++ + + Sbjct: 200 DDLAALDIPLHVETVDKRKDIPRRILELMEEWGSNHLFANMEYEVDELRRETRMIRQFAE 259 Query: 129 HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKA----LIQNLVQADLRSLPVP---A 181 + + + D+ ++PPG + + + Y VYTP+ +A + +NL ++ P A Sbjct: 260 NNMSFEVVHDTCVVPPGELHSGTGKQYAVYTPWYRAWMAHIHENLDLLEIYDRPEKNPGA 319 Query: 182 IRLTG--------PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQ 233 R T P P N + D + ++P GE A+ L KFC E V Y ++ Sbjct: 320 TRRTFKTLFDCPIPDAPKN-KQLNDEEKKRFHGLWPCGEHEAMSRLEKFCDEAVTSYHDR 378 Query: 234 RDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEF-VDLLIKPKSGAFSWLNELIWREFYR 292 R+IP GTS LS +L+ G +S R C ++ L G W++E+ WR+FY+ Sbjct: 379 RNIPGDNGTSCLSVHLASGTISSRTCVRTARDRNKTKRLDGGHQGIHVWISEVAWRDFYK 438 Query: 293 HLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNR 352 H++ +P VCM KPF P IEW+ + +AW +G TGFPI+DAAMRQLN +G+MHNR Sbjct: 439 HVLVNWPYVCMNKPFKPEYANIEWSYNMDHFEAWCEGRTGFPIVDAAMRQLNHMGYMHNR 498 Query: 353 LRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPT 412 RMI ASFL KDLL+DWR+GE+YFM L+DGD ASNNGGW ++AS G D PYFR+FNP Sbjct: 499 CRMIVASFLSKDLLIDWRMGEKYFMEHLVDGDFASNNGGWGFSASVGVDPQPYFRVFNPL 558 Query: 413 IQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHS-WLDKNDLSLNYPLPIVDHKKACHHTL 471 +Q ++FDP G +IR W+PEL + + IH P++ YP IVDHK A L Sbjct: 559 LQSEKFDPNGEYIRKWIPELKALSDKEIHDPYNRGAGTKAKKQGYPKQIVDHKGARERAL 618 Query: 472 NQY 474 + Y Sbjct: 619 SAY 621 >gi|322696650|gb|EFY88439.1| photolyase [Metarhizium acridum CQMa 102] Length = 587 Score = 315 bits (807), Expect = 1e-83, Method: Compositional matrix adjust. Identities = 183/497 (36%), Positives = 263/497 (52%), Gaps = 28/497 (5%) Query: 2 KATTAMSVHLVWLRNDLRITDNKALYAACHNSDAK---VIAVFIATPEQWRQHGISARQS 58 K A + W + DLR DN+AL A + +I ++I +P+ + H S + Sbjct: 87 KKVEAKDSVVHWFKTDLRCNDNRALALASEKAKEAAVPLICMYIVSPQDFEAHLTSPVRV 146 Query: 59 HFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVR 118 FI +L ++K L+ I + + Q LF N +YE++E+R Sbjct: 147 DFILRTLEILKKDLANLDIPLYIETVERRKQIPDKILELMEQWGSRHLFANMEYEVDELR 206 Query: 119 RDKLLEKRLQHRVICKSFD---DSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLR 175 R+ L L KSF+ D+ ++PPG + + + Y VY+P+ ++ + + + ADL Sbjct: 207 REANLVHDLAEN--GKSFEVVHDTCVVPPGQLRSGSGNQYAVYSPWYRSWVAH-IHADLE 263 Query: 176 SLPV--PAIRLTG--------------PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHIL 219 L + P + G P PSN + + ++P GE A L Sbjct: 264 LLELFDPPNKNPGTARKQFKDLFECAVPEAPSN-KQLTKEEKRRFHSLWPAGESAAKERL 322 Query: 220 RKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEF-VDLLIKPKSGA 278 KFC+EKV Y R+IP GTS LS +L+ G +S R C ++ L G Sbjct: 323 EKFCEEKVGGYSNNRNIPGEDGTSSLSVHLASGTISSRTCVRTARDRNKTKRLDAGNEGI 382 Query: 279 FSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDA 338 W++E+ WR+FY+H++ +P VCM KP+ P I W+ + AW +G TGFPI+DA Sbjct: 383 RVWISEVAWRDFYKHVLVHWPYVCMNKPYKPEYSNIAWSYNEEHFNAWCEGRTGFPIVDA 442 Query: 339 AMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAAST 398 AMRQLN G+MHNR RMI ASFL KDLL+DWR GE YFM L+DGD ASNNGGW ++AS Sbjct: 443 AMRQLNHNGYMHNRCRMIVASFLSKDLLIDWRKGERYFMEHLIDGDFASNNGGWGFSASV 502 Query: 399 GNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHS-WLDKNDLSLNYP 457 G D PYFRIFNP +Q ++FDP+G +IR W+PEL ++ ++ IH P+ YP Sbjct: 503 GVDPQPYFRIFNPLLQSEKFDPEGVYIRKWVPELQDLDSKEIHEPYGRGAGGKAKKAGYP 562 Query: 458 LPIVDHKKACHHTLNQY 474 PIV+HK L+ Y Sbjct: 563 KPIVNHKDCRDRALDAY 579 >gi|327305599|ref|XP_003237491.1| deoxyribodipyrimidine photo-lyase [Trichophyton rubrum CBS 118892] gi|326460489|gb|EGD85942.1| deoxyribodipyrimidine photo-lyase [Trichophyton rubrum CBS 118892] Length = 589 Score = 315 bits (807), Expect = 1e-83, Method: Compositional matrix adjust. Identities = 176/489 (35%), Positives = 259/489 (52%), Gaps = 21/489 (4%) Query: 13 WLRNDLRITDNKAL---YAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69 W + DLR+ DN++L Y+ + +I ++I +PE H S + I +L+ ++ Sbjct: 102 WFKQDLRLQDNRSLHRAYSFARYHNIPLICLYIFSPEDLTAHLCSPPRVDLILRTLVTLK 161 Query: 70 KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH 129 LS+K I + C LF N +YE++E+RR+ L + Sbjct: 162 SELSRKDIPLYMESIERRKGIPSRIVELCKTWGANHLFANIEYEVDELRREAKLTRLCAT 221 Query: 130 RVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQ--ADLRSLPVPAIRLTG 186 + I + DD+ ++ PG + + Y VY+P+ ++ + L Q +L + PA+ Sbjct: 222 QGIRFDTEDDTCVVAPGELTTQQGKQYAVYSPWYRSWVAYLKQHPENLELVDAPAVNAGN 281 Query: 187 -------------PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQ 233 P+ P+ + + + + M+P GEQ A LR+F +K Y + Sbjct: 282 ARKHFKNLFDSAVPIAPNQM-KLSEAEQERFKKMYPEGEQEAARRLREFLSKKGKQYHAK 340 Query: 234 RDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRH 293 RD + Q TS LSPY S G LS R ++ + L G +W++E+ WR+FY+H Sbjct: 341 RDFMSSQFTSVLSPYFSCGALSARTAVRMARDANGNELAGKSPGYSTWISEVAWRDFYKH 400 Query: 294 LMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRL 353 ++ +P +CM K F P +EW DS AW +G TGFPI+DAAMRQL WMHNR Sbjct: 401 VLTHWPYICMNKCFKPEFTDLEWEYDSTQFDAWCEGKTGFPIVDAAMRQLKHCAWMHNRT 460 Query: 354 RMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTI 413 RMI +SFL KDLL+DWR GE++FM L+DGD ASN+GGW + +STG D PYFRIFNP Sbjct: 461 RMIVSSFLSKDLLIDWRCGEQFFMLHLIDGDFASNHGGWGFGSSTGVDPQPYFRIFNPLR 520 Query: 414 QGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLN-YPLPIVDHKKACHHTLN 472 Q +RFDP G +IR+W+PEL +V IH P+ N YP PIV+H ++ L Sbjct: 521 QSERFDPDGDYIRYWVPELRDVEGSAIHDPYGRGAGGIAEKNGYPKPIVNHTESRERALE 580 Query: 473 QYYAAKKQS 481 +Y A S Sbjct: 581 KYKKAAHGS 589 >gi|326484060|gb|EGE08070.1| deoxyribodipyrimidine photo-lyase [Trichophyton equinum CBS 127.97] Length = 589 Score = 315 bits (807), Expect = 1e-83, Method: Compositional matrix adjust. Identities = 177/489 (36%), Positives = 259/489 (52%), Gaps = 21/489 (4%) Query: 13 WLRNDLRITDNKAL---YAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69 W + DLR+ DN++L Y+ + + +I ++I +PE H S + I +L ++ Sbjct: 102 WFKQDLRLQDNRSLHRAYSFARDHNIPLICLYIFSPEDLTAHLCSPPRVDLILRALATLK 161 Query: 70 KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH 129 LS+ I + C +LF N +YE++E+RR+ L + Sbjct: 162 SELSKNDIPLYMESIERRKGVPSRIVELCKTWGANQLFANIEYEVDELRREANLVRLCAK 221 Query: 130 RVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQ--ADLRSLPVPAIRLTG 186 + I + DD+ ++ PG + + Y VYTP+ ++ + L Q +L + PA+ Sbjct: 222 QGIRFYTEDDTCVVTPGELTTQQGKQYAVYTPWYRSWVAYLKQHPENLELVDAPAVNAGD 281 Query: 187 -------------PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQ 233 P P+ + + F + M+P GEQ A LR+F +K Y + Sbjct: 282 ARNHFKDLFDSAVPTAPNQM-KLFGAEQERFKKMYPEGEQEATRRLREFLSKKGKQYHAK 340 Query: 234 RDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRH 293 RD + Q TS LSPY S G LS R ++ + L G +W++E+ WR+FY+H Sbjct: 341 RDSMSSQFTSVLSPYFSCGALSARTAVRMARDANGNELAGKSPGYSTWISEVAWRDFYKH 400 Query: 294 LMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRL 353 ++ +P +CM K F P +EW D AW +G TGFPI+DAAMRQL WMHNR Sbjct: 401 VLTNWPYICMNKCFKPEFTDLEWEYDPTKFDAWCEGKTGFPIVDAAMRQLKHCAWMHNRT 460 Query: 354 RMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTI 413 RMI +SFL KDLL+DWR GE++FM L+DGD ASN+GGW + +STG D PYFRIFNP Sbjct: 461 RMIVSSFLSKDLLIDWRRGEQFFMLHLIDGDFASNHGGWGFGSSTGVDPQPYFRIFNPLR 520 Query: 414 QGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLN-YPLPIVDHKKACHHTLN 472 Q +RFDP G +IRHW+PEL +V IH P+ + N YP PIV+H ++ L Sbjct: 521 QSERFDPDGEYIRHWVPELRDVEGSAIHDPYGRGAEKIAEKNGYPRPIVNHTESRERALA 580 Query: 473 QYYAAKKQS 481 +Y A + S Sbjct: 581 KYKKAAQGS 589 >gi|332978155|gb|EGK14890.1| deoxyribodipyrimidine photo-lyase [Psychrobacter sp. 1501(2011)] Length = 566 Score = 315 bits (807), Expect = 1e-83, Method: Compositional matrix adjust. Identities = 195/560 (34%), Positives = 283/560 (50%), Gaps = 98/560 (17%) Query: 8 SVHLVWLRNDLRITDNKALY-------------------------------AACHNSDAK 36 + +L+W R DLR+ DN AL +++ K Sbjct: 10 TSYLMWFRRDLRVEDNTALSQLTDLAKQALTQNDPSQLDVSQSSVSKAAQPTILNSAQPK 69 Query: 37 VIAVFIATPEQWRQHGISARQSHFIYASLLQVQKSL-SQKGIVFQYHQCSNFDDSIEWLD 95 + A+F+ T EQW +H +S Q FI+ +L + SL +Q I + ++FD IE + Sbjct: 70 IHALFVVTAEQWLEHDMSIVQMDFIFRTLKVLATSLFNQLNIELHVLKTADFDSCIETVA 129 Query: 96 SYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHRVICKS-FDDSVLLPPGSILNHALQM 154 ++C Q +T + N +YE+NE++RD +E+RL+ + I S + D +LPP ++ + M Sbjct: 130 NFCQQHSITHMASNYEYEVNEMQRDAAIEQRLKQQDIEFSRYHDQCILPPKALTTNDETM 189 Query: 155 YKVYTPFRK---------------------------------ALIQNLVQADLRSLPVPA 181 YKV+TPF K A I +L Q LR L A Sbjct: 190 YKVFTPFYKKWQSILETSPPNLYSTEKVNSDKPTAERLSQILATIDDLHQQTLR-LFSKA 248 Query: 182 IRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQG 241 T V + + + + F GE A L+ F E V Y RD P+++ Sbjct: 249 YFETESVNQDHQAQLL----KNAEETFVAGEVAAYQQLQTFLAEDVQRYDIARDQPSLEA 304 Query: 242 TSQLSPYLSIGVLSPRQCWNRLKEEFVDLL------------IKP-----KSGAFS---- 280 TS+LS YL++G +SPR C+ + K+ + KP ++GA Sbjct: 305 TSRLSAYLTVGAISPRVCYLKAKQAAEAIYETNALNQSKKRPTKPLENSNEAGAEQDIQR 364 Query: 281 WLNELIWREFYRHLMAFYPSVCMGKPFIPWTE-KIEWNKDSHLLQAWKQGYTGFPIIDAA 339 W++EL WR+FYRH++A P + G F + K+ W+ D W QG TG P+IDAA Sbjct: 365 WISELAWRDFYRHVIADRPDIVKGTAFNKVADTKVHWSYDEQDFNRWCQGQTGVPLIDAA 424 Query: 340 MRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTG 399 MR LN G+MHNRLRM+TA FL KDL +DWR GE YFM +L+DGD ASNNGGWQW+AS G Sbjct: 425 MRCLNQTGFMHNRLRMVTAMFLTKDLFIDWRWGERYFMQRLIDGDFASNNGGWQWSASVG 484 Query: 400 NDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAP----HSWLDKNDLS-L 454 D+ PYFRI NP Q K D + FI+ WLPEL V +H + K +L+ + Sbjct: 485 TDAAPYFRIMNPFSQAKTHDKEAIFIKTWLPELKAVKPSILHDEAKLRQALSAKGELANV 544 Query: 455 NYPLPIVDHKKACHHTLNQY 474 +YP P+V+HK+A + + Q+ Sbjct: 545 DYPQPMVEHKQARLYAIGQF 564 >gi|322707580|gb|EFY99158.1| photolyase [Metarhizium anisopliae ARSEF 23] Length = 587 Score = 315 bits (806), Expect = 1e-83, Method: Compositional matrix adjust. Identities = 178/485 (36%), Positives = 260/485 (53%), Gaps = 26/485 (5%) Query: 13 WLRNDLRITDNKALYAACHNSDAK---VIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69 W + DLR DN+AL A + +I ++I +P+ + H S + FI +L ++ Sbjct: 98 WFKTDLRCNDNRALALASEKAKETAVPLICMYIVSPQDFEAHLTSPVRVDFILRTLEILK 157 Query: 70 KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH 129 + L++ I + + Q LF N +YE++E+RR+ + L Sbjct: 158 RDLAKLDIPLYIETVERRKQIPDRVLELMEQWGSRHLFANMEYEVDELRREANMVHDLAE 217 Query: 130 RVICKSFD---DSVLLPPGSILNHALQMYKVYTPFRKALIQNL-VQADLRSLPVPAIRLT 185 KSF+ D+ ++PPG + + + Y VY+P+ ++ + ++ DL L P + Sbjct: 218 N--GKSFEVVHDTCVVPPGQLQSGSGNQYAVYSPWYRSWVAHIHADLDLLELFDPPNKNP 275 Query: 186 G--------------PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYV 231 G P PSN + ++P GE A L KFC+E++ Y Sbjct: 276 GTARKRFKDLFDCAVPEAPSN-KELTKEEKRRFHSLWPAGENAAKERLDKFCEERIGGYS 334 Query: 232 EQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEF-VDLLIKPKSGAFSWLNELIWREF 290 + R+IPA GTS LS +L+ G +S R C ++ L G W++E+ WR+F Sbjct: 335 DNRNIPAEDGTSSLSVHLASGSISSRTCVRTARDRNKTKKLDGGNEGIRVWISEVAWRDF 394 Query: 291 YRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMH 350 Y+H++ +P VCM KP+ P I W+ + +AW +G TGFPI+DAAMRQLN G+MH Sbjct: 395 YKHVLVHWPYVCMNKPYKPEYSNIAWSYNEEHFKAWCEGRTGFPIVDAAMRQLNHNGYMH 454 Query: 351 NRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFN 410 NR RMI ASFL KDLL+DWR GE YFM L+DGD ASNNGGW ++AS G D PYFRIFN Sbjct: 455 NRCRMIVASFLSKDLLIDWRKGERYFMEHLIDGDFASNNGGWGFSASVGVDPQPYFRIFN 514 Query: 411 PTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHS-WLDKNDLSLNYPLPIVDHKKACHH 469 P +Q ++FDP+G +IR W+PEL ++ + IH P+ YP PIV+HK Sbjct: 515 PLLQSEKFDPEGVYIRKWVPELQDLDNKEIHDPYGRGAGAKARKAGYPKPIVNHKDCRDR 574 Query: 470 TLNQY 474 LN Y Sbjct: 575 ALNAY 579 >gi|30315019|gb|AAP30741.1|AF500083_1 photolyase [Fusarium oxysporum] Length = 630 Score = 314 bits (805), Expect = 2e-83, Method: Compositional matrix adjust. Identities = 179/488 (36%), Positives = 269/488 (55%), Gaps = 32/488 (6%) Query: 13 WLRNDLRITDNKALYAA---CHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69 W + DLR++DN+AL A + +IA++I +P+ + H S + F+ +L ++ Sbjct: 141 WFKMDLRLSDNRALALASDKAKEAGVPLIAMYIISPQDYEAHLRSPVRVDFMLRTLEVIK 200 Query: 70 KSLSQKGIVFQYHQCSNF----DDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125 L++ I D +E +D Q L+ N +YE++E+RR+ + + Sbjct: 201 HDLAKLDIPLYVETVEKRKRVPDRILELMD----QWGAGHLYANMEYEVDELRREASMIR 256 Query: 126 RLQHRVICKSFD---DSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQA-DLRSL---- 177 K+F+ D+ ++PPG + A + Y VYTP+ ++ + ++ + DL L Sbjct: 257 DFAEN--GKAFEVVHDTCVVPPGELHTGAGKQYAVYTPWYRSWVAHIHENLDLLELYEPP 314 Query: 178 ---PVPAIRLTGPVTPSNIP------RFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVY 228 P A ++ + IP R + + ++P GE A L KFC+E + Sbjct: 315 EKNPSSARKVFAKLFDVEIPDAPKSKRLDGEEKERLRSLWPCGEHEAKKRLDKFCEEMIG 374 Query: 229 YYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEF-VDLLIKPKSGAFSWLNELIW 287 Y ++R+IPA GTS +S +L+ G +S R C ++ L G +W++E+ W Sbjct: 375 NYQKKRNIPAEAGTSSISVHLASGTISARTCVRTARDRNKTKKLNGGNEGIQTWISEVAW 434 Query: 288 REFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIG 347 R+FY+H++ +P VCM KPF P I W+ D+ AW +G TGFPI+DAAMRQLN +G Sbjct: 435 RDFYKHVLVHWPYVCMNKPFKPEYSNISWSYDNEHFAAWCEGRTGFPIVDAAMRQLNHLG 494 Query: 348 WMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFR 407 +MHNR RMI A FL KDLL+DWR GE YFM L+DGD ASNNGGW ++AS G D PYFR Sbjct: 495 YMHNRCRMIVACFLAKDLLLDWRKGERYFMEHLVDGDFASNNGGWGFSASVGVDPQPYFR 554 Query: 408 IFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLN-YPLPIVDHKKA 466 IFNP +Q ++FDP G +IR W+PEL ++ + IH P++ + N YP PIV HK Sbjct: 555 IFNPLLQSEKFDPDGDYIRKWVPELKDLDRKAIHDPYNRGAGSKAKKNGYPAPIVTHKDC 614 Query: 467 CHHTLNQY 474 L Y Sbjct: 615 RDRALAAY 622 >gi|121703429|ref|XP_001269979.1| deoxyribodipyrimidine photo-lyase Phr1, putative [Aspergillus clavatus NRRL 1] gi|119398122|gb|EAW08553.1| deoxyribodipyrimidine photo-lyase Phr1, putative [Aspergillus clavatus NRRL 1] Length = 586 Score = 314 bits (804), Expect = 2e-83, Method: Compositional matrix adjust. Identities = 173/488 (35%), Positives = 264/488 (54%), Gaps = 19/488 (3%) Query: 13 WLRNDLRITDNKAL---YAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69 W ++DLR+ DN+AL Y + +I ++I +P+ H S + +L Q++ Sbjct: 98 WFKSDLRLHDNRALQMAYQTAKEHNIPLIGLYILSPQDLTAHLSSPARVDLTLRTLDQLK 157 Query: 70 KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD-KLLEKRLQ 128 + L++ I D + + C + V +F N +YE++E+RR+ KL+ Q Sbjct: 158 RDLNELDIPLYMETQETRKDIPQRIIDLCQEWGVNNIFANLEYEVDELRREAKLVRMCAQ 217 Query: 129 HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNL--------VQADLRSLPVP 180 + + ++ D+ ++ PG++ + + Y VY+P+ +A + +L + + S P Sbjct: 218 NGIKFETAHDACVVTPGAVASQQGKQYAVYSPWYRAWLVHLRENPDCLELSEEPGSNPGN 277 Query: 181 AIRLTGPVTPSNIP------RFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQR 234 A + + S +P R D + ++P GE AL L KF +E+V Y + R Sbjct: 278 ARKHFAKLFESEVPAAPENKRLSDEQRKYFGQLYPAGEHEALDRLEKFVEERVKDYADAR 337 Query: 235 DIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHL 294 ++ Q TS LSPY + G LS R ++ L + G SW++E+ WR+FY+H+ Sbjct: 338 NMMFGQTTSILSPYFASGSLSARTAVVHARKANKGSLDRGDPGLASWISEVAWRDFYKHV 397 Query: 295 MAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLR 354 + +P +CM K F P +EW D + AW +G TGFPI+DAAMRQ+ WMHNR R Sbjct: 398 LVHWPFICMNKCFKPEFTNLEWEYDENKFAAWCEGKTGFPIVDAAMRQMKHDAWMHNRAR 457 Query: 355 MITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQ 414 MI ASFL KDLL+DWR GE YFM L+DGD ASN+GGW + +STG D PYFRIFNP Q Sbjct: 458 MIVASFLSKDLLIDWRRGERYFMEHLIDGDFASNHGGWGFGSSTGVDPQPYFRIFNPLRQ 517 Query: 415 GKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLN-YPLPIVDHKKACHHTLNQ 473 +RFDP G +IR WLPEL + +H P++ N YP PI++H K+ L + Sbjct: 518 SERFDPDGEYIRKWLPELRGIKGSAVHEPYARGAGATAEKNGYPRPILEHSKSRAQALER 577 Query: 474 YYAAKKQS 481 + A + Sbjct: 578 FKRASENG 585 >gi|242208527|ref|XP_002470114.1| hypothetical DNA photolyase [Postia placenta Mad-698-R] gi|220730866|gb|EED84717.1| hypothetical DNA photolyase [Postia placenta Mad-698-R] Length = 543 Score = 313 bits (803), Expect = 3e-83, Method: Compositional matrix adjust. Identities = 185/528 (35%), Positives = 272/528 (51%), Gaps = 76/528 (14%) Query: 13 WLR-NDLRITDNKALYAACHNSDAK---VIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 W+R DLR DN+AL A + +IA+F+ +P + H SAR+ F +L + Sbjct: 20 WMRIEDLRTRDNRALAQASEQAREDHVPLIALFVLSPHDYIAHDRSARRIDFTLRNLRCI 79 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD-KLLEKRL 127 + SL++ + + + ++ S + T+L+ N +YE++E+RRD K+ E Sbjct: 80 RSSLAELHVPLYTTTHTPRTNIPSYVLSLLNEWNATRLYANIEYEVDELRRDIKVCELAR 139 Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187 + +V C D ++PPG +L + Y VY+PF +A +L + + P+ P Sbjct: 140 EKKVACTFVHDKCIIPPGKVLTKGEKGYTVYSPFLRAWTPHLTPSKGEADPL----ACAP 195 Query: 188 VTPSNIPRFFDYPFQA------------------------IDPMFPIGEQNALHILRKFC 223 +N P ++P I +P GE A IL +F Sbjct: 196 SPAANSPSIHNHPVYGKLFDQSVPDEVDGFSLQDTEERDRIRTCWPAGEDAAKEILERFV 255 Query: 224 K----------------------------EKVYYYVEQRDIPAIQGTSQLSPYLSIGVLS 255 ++ Y + RD TS+LSPYL+ GV+S Sbjct: 256 NTMARSEQMGAVNPLSNGAKVPTKSPTKDSRIGKYKDARDKVDADTTSRLSPYLAAGVIS 315 Query: 256 PRQC------WNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIP 309 R+C + K VD + ++G+ W+ E+ WR+FY H++A +P V MG+PF Sbjct: 316 ARECIRATMQLSASKAPKVD--VSRETGSGRWVQEIAWRDFYTHVVALFPRVSMGRPFQE 373 Query: 310 WTEKIEWNKDS--HLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLV 367 I+W D+ LQAWK G TG PI+DA MRQ +GWMHNR+RM+ A +LVKDL++ Sbjct: 374 KLSSIKWEADTAGDHLQAWKDGRTGVPIVDAGMRQALAMGWMHNRVRMVAAMYLVKDLMI 433 Query: 368 DWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRH 427 DWR+GE++FM L+DGDLASNNGGWQW+ASTG D PYFRIFNP Q ++ DP G +IR+ Sbjct: 434 DWRLGEKHFMETLIDGDLASNNGGWQWSASTGVDPAPYFRIFNPYTQSQKADPTGDYIRY 493 Query: 428 WLPELNNVPTQYIHAPHSWL-DKNDLSLNYPLPIVDHKKACHHTLNQY 474 ++PEL NV IH P L DK L YP P+V H +A + +Y Sbjct: 494 FVPELANVRGADIHNPPPALADK----LGYPRPLVKHDEARQRAIRRY 537 >gi|302035591|ref|YP_003795913.1| deoxyribodipyrimidine photolyase [Candidatus Nitrospira defluvii] gi|300603655|emb|CBK39986.1| Deoxyribodipyrimidine photolyase [Candidatus Nitrospira defluvii] Length = 481 Score = 313 bits (802), Expect = 4e-83, Method: Compositional matrix adjust. Identities = 172/476 (36%), Positives = 265/476 (55%), Gaps = 20/476 (4%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 LVW R DLR++DN AL AAC +++ +F+ R H + F+ L ++++ Sbjct: 4 LVWFRRDLRLSDNPALSAACQECR-EIVPLFVFDEPLLRSHAFGSACVGFMLGCLEELRR 62 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL-QH 129 SL+ G+ + + ++ D + +V +++NR YE + RD+ +++RL Q Sbjct: 63 SLALHGVSLAWRMGDPVESVLQAADDF----KVDAVYWNRDYEPAALERDREVQQRLAQQ 118 Query: 130 RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV- 188 ++F D V+ + + ++ Y+ +R A L +P+ G Sbjct: 119 GRTVRTFKDHVVFEAEEVRGLSGDPFQRYSAYRDRWWTKWRAAAPPLLGIPSFPPAGKAS 178 Query: 189 TPSNI--PRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246 TP + P D ++++ GEQ A L+ F + V+ YV R++PAI GTS+LS Sbjct: 179 TPDSRKWPSVTDLGYESVPMWIEPGEQAAHARLQWFLRGPVHQYVTGRNLPAIDGTSKLS 238 Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG-- 304 P+L G +S R + ++ F+W++EL+WREF++ ++A +P V G Sbjct: 239 PHLRFGTVSARTLVHAALNALAKGGAVSRADVFTWVDELVWREFFQQVLAAFPHVAHGPF 298 Query: 305 --KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLV 362 KP +P +D L AW QG TG+PI+DA MRQLN GWMHNR+RM+ ASFLV Sbjct: 299 KAKPGLPEPRPAGPERD-RLFAAWSQGLTGYPIVDAGMRQLNQTGWMHNRVRMVVASFLV 357 Query: 363 KDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQG 422 KDL VDW+ GE YFM +L+DGDLA+NNG WQW ASTG D++ +RIFNP IQ ++FD +G Sbjct: 358 KDLRVDWQSGERYFMERLVDGDLAANNGNWQWCASTGTDAMQGYRIFNPRIQSEKFDAEG 417 Query: 423 TFIRHWLPELNNVPTQYIHAPH------SWLDKNDLSLNYPLPIVDHKKACHHTLN 472 ++R ++PEL +VPT++IH PH + +YP PIVDH++A L+ Sbjct: 418 EYLRRYVPELKHVPTKWIHEPHLMPPLEQVQAGCRIGSDYPEPIVDHRQARQEYLD 473 >gi|67516211|ref|XP_657991.1| hypothetical protein AN0387.2 [Aspergillus nidulans FGSC A4] gi|40747330|gb|EAA66486.1| hypothetical protein AN0387.2 [Aspergillus nidulans FGSC A4] gi|259489370|tpe|CBF89585.1| TPA: DNA photolyase (Eurofung) [Aspergillus nidulans FGSC A4] Length = 567 Score = 312 bits (799), Expect = 8e-83, Method: Compositional matrix adjust. Identities = 179/500 (35%), Positives = 269/500 (53%), Gaps = 23/500 (4%) Query: 3 ATTAMSVHLVWLRNDLRITDNKAL---YAACHNSDAKVIAVFIATPEQWRQHGISARQSH 59 A TA + + W ++DLR+ DN+AL Y +I ++I +PE H S + Sbjct: 70 AMTANAAVVHWFKSDLRLHDNRALQMAYRVAREHKIPLIGLYILSPEDLTAHLSSPARVD 129 Query: 60 FIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRR 119 +L Q+++ L + + + D + + C + LF N +YE++E+RR Sbjct: 130 LTLRTLEQLKRDLGELDVPLYMETQACRKDIPRRIINLCQEWGANHLFANLEYEVDELRR 189 Query: 120 D-KLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNL--------V 170 + KL+ ++ + ++ D ++PPG + + + Y VY+P+ ++ + L V Sbjct: 190 EAKLIRLCAENGIRFETAHDMCVVPPGVLSSQQGRQYAVYSPWFRSWLAFLNENPEYLEV 249 Query: 171 QADLRSLPVPAIRLTG-------PVTPSNIPRFFDYP-FQAIDPMFPIGEQNALHILRKF 222 D S P A R P TP N RF D + FP GE L L +F Sbjct: 250 SEDPTSNPGDARRYFKELFECPVPATPEN-KRFDDVEKADRVRRAFPAGEHEGLRRLEEF 308 Query: 223 CKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWL 282 EK Y ++R+ + + TS+LSPY + G LS R + +E + + ++G SW+ Sbjct: 309 L-EKATAYDDERNFLSGETTSKLSPYFASGSLSARTAVAKAREANAGKISRGEAGYISWI 367 Query: 283 NELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQ 342 +E+ WR+FY+H++ +P +CM K F I+W+ ++ +AW G TG+P++DAAMRQ Sbjct: 368 SEVAWRDFYKHVLVHWPFICMNKCFKFEFTNIDWSYNNTHFEAWAAGKTGYPLVDAAMRQ 427 Query: 343 LNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDS 402 L+ WMHNR RM+ +SFL KDLL+DWR GE YFM L+DGD ASN+GGW + +STG D Sbjct: 428 LHATAWMHNRCRMVVSSFLCKDLLIDWRRGERYFMEHLIDGDFASNHGGWGFGSSTGVDP 487 Query: 403 VPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLN-YPLPIV 461 PYFRIFNP Q +RFDP G FIR W+PEL V IHAP+ + N YP PIV Sbjct: 488 QPYFRIFNPIRQSERFDPDGEFIRRWVPELRGVEGNAIHAPYERGAGDIARANGYPEPIV 547 Query: 462 DHKKACHHTLNQYYAAKKQS 481 DH + L +Y A + + Sbjct: 548 DHARQRGVALRKYKDAARGA 567 >gi|193216116|ref|YP_001997315.1| deoxyribodipyrimidine photo-lyase [Chloroherpeton thalassium ATCC 35110] gi|193089593|gb|ACF14868.1| Deoxyribodipyrimidine photo-lyase [Chloroherpeton thalassium ATCC 35110] Length = 477 Score = 311 bits (798), Expect = 1e-82, Method: Compositional matrix adjust. Identities = 192/489 (39%), Positives = 265/489 (54%), Gaps = 33/489 (6%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPE-QWRQHGISARQSHFIYASL 65 M+ +VW R DLRI D+ AL A +D ++I +FI + R+ S F+ SL Sbjct: 1 MNRIIVWHRRDLRIFDHSALAEAAKFAD-EIIPIFILDDDILLRREDFSPACVGFMLESL 59 Query: 66 LQVQKSLSQKG--IVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLL 123 + S + G ++ + Q +E L S + R +++N YE RD+ + Sbjct: 60 EALALSYANIGGKLIVRRGQV------LEVLKSLVGETRAQAIYFNEDYEPFAKMRDQAV 113 Query: 124 EKRLQH-RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRK---ALIQNLVQADLRSLPV 179 + + V K+F D V P +L Q Y V+TP++K AL N+ P Sbjct: 114 QSEFEKLGVRVKAFTDQVCFHPQRVLKDNGQPYTVFTPYQKKWLALSGNI------PTPQ 167 Query: 180 PAI-RLTGPVTPS-NIPRFFDYPFQ-AIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDI 236 PA+ R++ P PS +P+ D + ++ P+ GE L LR F + +Y+Y E RD Sbjct: 168 PALTRISTPELPSIPLPKTSDIRKKFSVQPIVQGGEPKGLKRLRAFLSQNIYHYKELRDF 227 Query: 237 PAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMA 296 PA TS LS L G LS R ++ + G ++++ELIWREFY ++ Sbjct: 228 PATNATSLLSADLRFGTLSIRHVFHESMRLVPQASEPAREGIQTFISELIWREFYFQILD 287 Query: 297 FYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMI 356 +P V F P E ++W + +AWK G TG+PI+DAAMR L GWMHNRLRMI Sbjct: 288 HFPHV-EKHSFKPEFENLKWENNEVFFEAWKNGQTGYPIVDAAMRALRQTGWMHNRLRMI 346 Query: 357 TASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGK 416 ASFL KDLL+DWR GE YFM L+DGDLA+NNGGWQW+ASTG D+ PYFRIFNP +Q + Sbjct: 347 VASFLTKDLLIDWRWGELYFMQHLIDGDLAANNGGWQWSASTGTDAQPYFRIFNPVLQSQ 406 Query: 417 RFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKN---------DLSLNYPLPIVDHKKAC 467 +FDP+G FIR ++PEL VP +YIH P L K+ L +YP PIV+HK Sbjct: 407 KFDPKGEFIRKYVPELQAVPVRYIHFPAEILRKSPLLAREIGVALGKDYPHPIVEHKVQR 466 Query: 468 HHTLNQYYA 476 L Y A Sbjct: 467 EKALRLYKA 475 >gi|257454814|ref|ZP_05620065.1| deoxyribodipyrimidine photo-lyase [Enhydrobacter aerosaccus SK60] gi|257447747|gb|EEV22739.1| deoxyribodipyrimidine photo-lyase [Enhydrobacter aerosaccus SK60] Length = 515 Score = 311 bits (796), Expect = 2e-82, Method: Compositional matrix adjust. Identities = 175/475 (36%), Positives = 250/475 (52%), Gaps = 42/475 (8%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSD---AKVIAVFIATPEQWRQHGISARQSHFIYASL 65 ++L+W R DLR DN A A C ++ A VIAV TP+QW+ H S Q I + Sbjct: 1 MNLMWFRQDLRTFDNTAFAACCEHAQQNHAGVIAVVYLTPKQWQSHRKSLWQIDLILRQI 60 Query: 66 LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125 +++SLSQ I +F + C Q ++ LF N +Y +NEV RD+ + + Sbjct: 61 RALEQSLSQLNIGIIIRVVDDFASQATDVLELCQQLSISHLFANLEYPVNEVARDQYIAQ 120 Query: 126 RLQH-RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL 184 + Q ++ + FDDS ++ P I+ YKV+TPF K + + L P PA + Sbjct: 121 QAQSLGIVTQWFDDSQVVAPQRIVTDKGMPYKVFTPFYKRWLAMIETGGLTLSPTPAAMV 180 Query: 185 TGPV---------------------TPSNIPRFFDYPFQAIDP-----------MFPIGE 212 + T R + P A+D ++P GE Sbjct: 181 INTIQLAKDSRNTNTNTNTNTNDYITIDAFYRAYLIPTAALDKQLNHVSELAQLLYPAGE 240 Query: 213 QNALHILRKFCKEKVYYYVEQRDIPAIQ----GTSQLSPYLSIGVLSPRQCWNRLKEEF- 267 A L F K+ + Y RD+PA+ TS+LSPYL+IG+LSPR C+ +++ Sbjct: 241 AAAQSRLDDFLKKHIADYNTARDVPALNNHLGATSRLSPYLAIGMLSPRLCYLEARQKLN 300 Query: 268 VDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFI-PWTEKIEWNKDSHLLQAW 326 + + W++EL WR+FY +M P + GK F+ P E + W D ++W Sbjct: 301 SQQGLGSEKDIMRWISELAWRDFYYDVMVNRPDIVKGKAFLTPLDESVAWRYDLADFESW 360 Query: 327 KQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLA 386 QG TG P++DAAMR LN+ G+MHNRLRM+ A +L K+LL+DWR GE YFM L+DGD A Sbjct: 361 YQGKTGVPLVDAAMRCLNSTGFMHNRLRMVVAMYLSKNLLIDWRWGEAYFMQHLVDGDFA 420 Query: 387 SNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIH 441 SNNGGWQW+AS G D+ PYFR+ NP Q DP ++I+HW+PEL VP I+ Sbjct: 421 SNNGGWQWSASVGTDAQPYFRVMNPFSQAATHDPDASYIQHWVPELGTVPANIIN 475 >gi|326476092|gb|EGE00102.1| deoxyribodipyrimidine photo-lyase [Trichophyton tonsurans CBS 112818] Length = 589 Score = 310 bits (793), Expect = 4e-82, Method: Compositional matrix adjust. Identities = 175/489 (35%), Positives = 257/489 (52%), Gaps = 21/489 (4%) Query: 13 WLRNDLRITDNKAL---YAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69 W + DLR+ DN++L Y+ + + +I ++I +PE H S + I +L ++ Sbjct: 102 WFKQDLRLQDNRSLHRAYSFARDHNIPLICLYIFSPEDLTAHLCSPPRVDLILRALATLK 161 Query: 70 KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH 129 LS+ I + C +LF N +YE++E+RR+ L + Sbjct: 162 SELSKNDIPLYMESIERRKGVPSRIVELCKTWGANQLFANIEYEVDELRREANLVRLCAK 221 Query: 130 RVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQ--ADLRSLPVPAIRLTG 186 + I + DD+ ++ PG + + Y VYTP+ ++ + L Q +L + PA+ Sbjct: 222 QGIRFYTEDDTCVVTPGELTTQQGKQYAVYTPWYRSWVAYLKQHPENLELVDAPAVNAGD 281 Query: 187 -------------PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQ 233 P P+ + + + M+P GEQ A LR+F + Y + Sbjct: 282 ARNHFKDLFDSAVPTAPNQM-KLSGAEQERFKKMYPEGEQEATRRLREFLSKNGKQYHAK 340 Query: 234 RDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRH 293 RD + Q TS LSPY S G LS R ++ + L G +W++E+ WR+FY+H Sbjct: 341 RDSMSSQFTSVLSPYFSCGALSARTAVRMARDANGNELAGKSPGYSTWISEVAWRDFYKH 400 Query: 294 LMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRL 353 ++ +P +CM K F P +EW D AW +G TGFPI+DAAMRQL WMHNR Sbjct: 401 VLTNWPYICMNKCFKPEFTDLEWEYDPTKFDAWCEGKTGFPIVDAAMRQLKHCAWMHNRT 460 Query: 354 RMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTI 413 RMI +SFL KDLL+DWR GE++FM L+DGD ASN+GGW + +STG D PYFRIFNP Sbjct: 461 RMIVSSFLSKDLLIDWRRGEQFFMLHLIDGDFASNHGGWGFGSSTGVDPQPYFRIFNPLR 520 Query: 414 QGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLN-YPLPIVDHKKACHHTLN 472 Q +RFDP G +IRHW+PEL +V IH P+ + N YP PIV+H ++ L Sbjct: 521 QSERFDPDGEYIRHWVPELRDVEGSAIHDPYGRGAEKIAEKNGYPRPIVNHTESRERALA 580 Query: 473 QYYAAKKQS 481 +Y A + S Sbjct: 581 KYKKAAQGS 589 >gi|16799672|ref|NP_469940.1| hypothetical protein lin0597 [Listeria innocua Clip11262] gi|16413037|emb|CAC95829.1| lin0597 [Listeria innocua Clip11262] Length = 467 Score = 310 bits (793), Expect = 4e-82, Method: Compositional matrix adjust. Identities = 186/482 (38%), Positives = 258/482 (53%), Gaps = 33/482 (6%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSH-FIYASLLQVQ 69 ++W R DLR+ DNKALY AC D +I +F PEQ+ I SH +AS+ Q Sbjct: 4 VMWFRRDLRVNDNKALYHACKEED--LILLFQVNPEQF----IKGSPSHQAFFASVAHFQ 57 Query: 70 KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRV---TKLFYNRQYEINEVRRDKLLEKR 126 + L++ H F + IE L L++++ K+F+NR RD+ Sbjct: 58 QELNKNT-----HLQIMFGEPIELLKQ--LKEKIPTWDKVFFNRDETGYGASRDEAARAF 110 Query: 127 LQHRVIC-KSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185 + I S+ DS L + A + YK++TP+ K + + + L+ P Sbjct: 111 FADKEITVHSYHDSYLHSAEEVKKSATEYYKIFTPYYKKWREEIKEMPLKVTLKPEKIRK 170 Query: 186 GPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245 + P N F Q + P F GE+ A L F KE + Y + RD+PA+ TS L Sbjct: 171 ESLFP-NYEEQFRELIQDL-PAFDSGEKAANTRLANFVKEDLADYDKARDVPALDKTSHL 228 Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305 S YL G +S R W L++E + G ++ EL WR+FY + +P + Sbjct: 229 SRYLRTGEISIRTVWQALQKE------EATEGRATFEKELCWRDFYNMIYVSFPK-QKNE 281 Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365 P IEW + + W+ G TGFP++DAAMRQL GWMHNRLRMITASFL KDL Sbjct: 282 PIQENYRFIEWENNREFFKKWQDGQTGFPLVDAAMRQLKETGWMHNRLRMITASFLTKDL 341 Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425 L+DWR GE+YF L+D D ASN GGWQWAASTG D+VPYFRIFNPT Q ++FDP GTFI Sbjct: 342 LIDWRFGEKYFQQMLIDYDPASNIGGWQWAASTGTDAVPYFRIFNPTTQSEKFDPDGTFI 401 Query: 426 RHWLPELNNVPTQYIHAPHSWLDKND------LSLNYPLPIVDHKKACHHTLNQYYAAKK 479 R ++ EL ++P ++IH P + L +YPLPI+DHK+ + +Y +K+ Sbjct: 402 RKYVKELRDLPDKFIHQPEKMSETEQKEHGLILGKDYPLPIIDHKERRKLAIARYEFSKE 461 Query: 480 QS 481 S Sbjct: 462 HS 463 >gi|330916654|ref|XP_003297506.1| hypothetical protein PTT_07932 [Pyrenophora teres f. teres 0-1] gi|311329779|gb|EFQ94400.1| hypothetical protein PTT_07932 [Pyrenophora teres f. teres 0-1] Length = 632 Score = 309 bits (791), Expect = 7e-82, Method: Compositional matrix adjust. Identities = 177/492 (35%), Positives = 265/492 (53%), Gaps = 38/492 (7%) Query: 13 WLRNDLRITDNKALYAACHNSDAK---VIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69 W + DLRI DN L A + + +I +++ +P+ W H +S + F S+ +Q Sbjct: 140 WFKRDLRIRDNTGLSKAAELAKERGVGLIGIWLMSPQDWEAHLVSPPKCDFELRSVELLQ 199 Query: 70 KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD-KLLEKRLQ 128 K LS+ I + + L + V +F N +YE +E+RR+ +L+ L+ Sbjct: 200 KELSELDIPLYIETIPERKNVTKRLVELAQEWNVKNVFCNLEYEPDELRREERLVRMMLE 259 Query: 129 HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNL-VQADL---RSLP------ 178 + + D ++PPGS+ A + Y VY+P+ +A I +L DL R +P Sbjct: 260 KGIGFDPYHDDCVVPPGSLKTGAGKQYAVYSPWCRAWIAHLHAHPDLLIERPMPGRNPTN 319 Query: 179 ------------VPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEK 226 VP++ +TP RF ++P GE A+ L +F EK Sbjct: 320 FRDKFSKLFEFSVPSLPECKALTPEEKERF--------SRLWPAGEAAAVDRLERFLVEK 371 Query: 227 VYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKE-EFVDLLIKPKSGAFSWLNEL 285 + Y + R+ PA+ T ++S + + G L+ R ++ L K G +W+ E+ Sbjct: 372 IVKYKDTRNFPALNSTGRVSVHHAAGTLAARTSIRMARDINSAQKLDGGKDGVKTWIGEV 431 Query: 286 IWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNT 345 WR+FYRH++ +P VCM KPF I W ++ AW +G TG+PI+DAAMR LN Sbjct: 432 AWRDFYRHVLVNWPYVCMNKPFKYEYTNIHWEYNTAHFTAWTRGLTGYPIVDAAMRCLNH 491 Query: 346 IGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPY 405 G+MHNRLRMITASFL K LL+DWR+GE+YF++ L+DGD ASNNGGW ++ASTG D PY Sbjct: 492 TGYMHNRLRMITASFLSKHLLLDWRLGEQYFLTHLIDGDFASNNGGWGFSASTGVDPQPY 551 Query: 406 FRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKN---DLSLNYPLPIVD 462 FRIFNP IQ ++FD G FIR W+ EL+ V + +H P++ K + YP P+V+ Sbjct: 552 FRIFNPWIQSEKFDADGEFIRMWVEELSGVQGKEVHNPYAAGGKAAEVARRMGYPEPVVE 611 Query: 463 HKKACHHTLNQY 474 H+ A L +Y Sbjct: 612 HRVARERCLKRY 623 >gi|145605824|ref|XP_370339.2| hypothetical protein MGG_06836 [Magnaporthe oryzae 70-15] gi|145013607|gb|EDJ98248.1| hypothetical protein MGG_06836 [Magnaporthe oryzae 70-15] Length = 595 Score = 308 bits (789), Expect = 1e-81, Method: Compositional matrix adjust. Identities = 170/482 (35%), Positives = 249/482 (51%), Gaps = 20/482 (4%) Query: 13 WLRNDLRITDNKALYAACHNSDAK---VIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69 W + DLR+ DN AL A + + +IA++ +P+ W H + + F SL ++ Sbjct: 106 WFKMDLRVADNTALRLASEKAKSAGVPLIALYTVSPKDWEAHLRAPVRVDFTLRSLEVLR 165 Query: 70 KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL-Q 128 + L++ I + + + S + + L+ N +YE++E+RR+ L + L + Sbjct: 166 QDLAKLDIPLHVETVDDRRAMKQRVLSLMEEWDASHLYANMEYEVDELRREANLVRLLAE 225 Query: 129 HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188 + + D+ ++PPG + + Y VY+P+ +A +++L P+ Sbjct: 226 NGKSMEVVHDTCVVPPGKLQTGTGRQYAVYSPWYRAWLKHLSGDPELLEPMEPPHKNPAS 285 Query: 189 TPSNIPRFFDYPF--------------QAIDPMFPIGEQNALHILRKFCKEKVYYYVEQR 234 FD Q + M+P GE A L F K ++ Y +R Sbjct: 286 AREKFSHLFDGKIPAAPKSKQMNEEEQQRLAAMWPAGEHEARKRLDAFIKRRIDGYAAKR 345 Query: 235 DIPAIQGTSQLSPYLSIGVLSPRQCWNRL-KEEFVDLLIKPKSGAFSWLNELIWREFYRH 293 + PA GTS +S +L+ G LS R + K L G +W++E+ WR+FY+H Sbjct: 346 NFPADDGTSSISVHLAAGTLSARTAVHLAHKASGTRKLDGGSQGIQTWISEVAWRDFYKH 405 Query: 294 LMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRL 353 ++ +P VCM KPF P I W+ D AW +G TGFPI+DAAMRQL GWMHNR Sbjct: 406 VLVNWPYVCMNKPFKPEYSNIAWSYDMEHFAAWCEGRTGFPIVDAAMRQLRGTGWMHNRC 465 Query: 354 RMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTI 413 RMI ASFL KD L+DWR+GE YFM L+DGD ASNNGGW +AAS G D PYFR+FNP + Sbjct: 466 RMIVASFLAKDFLIDWRMGERYFMENLVDGDFASNNGGWGFAASVGVDPQPYFRVFNPLL 525 Query: 414 QGKRFDPQGTFIRHWLPELNNVPTQYIHAPHS-WLDKNDLSLNYPLPIVDHKKACHHTLN 472 Q ++FDP G +IR W+PEL + + IH P+ YP P+VDHK L Sbjct: 526 QSEKFDPNGEYIRKWIPELKGIKGKAIHDPYGRGCGVEAKKKGYPKPLVDHKGCRERALK 585 Query: 473 QY 474 Y Sbjct: 586 AY 587 >gi|293605130|ref|ZP_06687522.1| deoxyribodipyrimidine photolyase [Achromobacter piechaudii ATCC 43553] gi|292816533|gb|EFF75622.1| deoxyribodipyrimidine photolyase [Achromobacter piechaudii ATCC 43553] Length = 363 Score = 308 bits (788), Expect = 2e-81, Method: Compositional matrix adjust. Identities = 156/339 (46%), Positives = 213/339 (62%), Gaps = 6/339 (1%) Query: 139 SVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFD 198 + LL PG++ Y+VYTP+ + L A + ++P P + +P +P FD Sbjct: 21 ASLLRPGTVTTGKGDCYRVYTPYARTCRDRLRTAPVVAVPPPRPQTPPDWSPDPLPDTFD 80 Query: 199 ---YPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLS 255 P +AI ++P GE A L F + + Y ++RD P++ GTS LSPYL+ GVLS Sbjct: 81 GFARPSEAIRALWPAGEAAAGDRLEAFTEGVIDAYKDERDFPSLPGTSCLSPYLAAGVLS 140 Query: 256 PRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIE 315 P Q L K+GA +W+NEL+WREFY+HL+A YPS+ M +P P T + Sbjct: 141 PGQALRAALSANHGELDSGKAGAATWINELLWREFYQHLLAAYPSLSMHQPMKPETAAVP 200 Query: 316 WNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEY 375 W L+AW+QG TG PI+DAAMRQL +GWMHNRLRM+TA FL K+LL+DWR+GE + Sbjct: 201 WRDAPDDLRAWQQGKTGIPIVDAAMRQLLALGWMHNRLRMVTAMFLSKNLLIDWRLGEAW 260 Query: 376 FMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNV 435 FM+ L+DGDLA+NNGGWQW+ASTG D+VPYFR+FNP Q +RFDP+G F+R WLPEL ++ Sbjct: 261 FMAHLVDGDLAANNGGWQWSASTGADAVPYFRVFNPLSQSRRFDPRGVFLREWLPELADL 320 Query: 436 PTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQY 474 + IH P + YP+PIVD ++ L + Sbjct: 321 DDKAIHDPSP---MERAAAGYPMPIVDLAQSRLRALEAF 356 >gi|302924301|ref|XP_003053859.1| predicted protein [Nectria haematococca mpVI 77-13-4] gi|256734800|gb|EEU48146.1| predicted protein [Nectria haematococca mpVI 77-13-4] Length = 597 Score = 307 bits (787), Expect = 2e-81, Method: Compositional matrix adjust. Identities = 176/489 (35%), Positives = 272/489 (55%), Gaps = 34/489 (6%) Query: 13 WLRNDLRITDNKALYAA---CHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69 W + DLRI+DNKAL A + +IA+FI +P+ + H + + F+ +L ++ Sbjct: 107 WFKMDLRISDNKALALASDKAKQAGVPLIAMFIVSPQDYEAHLRAPVRVDFMLRTLAVLK 166 Query: 70 KSLSQKGI---VFQYHQCSNFDDSI-EWLDSYCLQQRVTKLFYNRQYEINEVRRDK-LLE 124 + L++ I V + N D I E +D + + ++ N +YE++E+RR+ ++ Sbjct: 167 EDLAKLDIPLYVETVEKRRNIPDRILELMDEWG----ASHMYANMEYEVDELRREAAMIR 222 Query: 125 KRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQ-ADLRSL------ 177 ++ ++ D+ ++PPG + A + Y VYTP+ +A + ++ + DL L Sbjct: 223 DFAENGKAFEAVHDTCVVPPGKLQTGAGKQYAVYTPWYRAWVAHIHENPDLLELYDPPEK 282 Query: 178 -PVPAIRLTGPVTPSNIPRFFDYPF---------QAIDPMFPIGEQNALHILRKFCKEKV 227 P A + + +IP D P + + ++P GE A L KFC+E + Sbjct: 283 NPASARKTFKKLFDIDIP---DAPKNKQLDTEEKKRLRSLWPCGEHEAKKRLDKFCEEMI 339 Query: 228 YYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKS-GAFSWLNELI 286 Y ++R+IP+ GTS LS +L+ G +S R C ++ + S G +W++E+ Sbjct: 340 GNYHKKRNIPSDLGTSCLSVHLASGTISARTCVRTARDRNKTKKLNAGSEGIQTWISEVA 399 Query: 287 WREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTI 346 WR+FY+H++ +P VCM KPF P I W+ D AW +G TGFPI+DAAMRQ+ + Sbjct: 400 WRDFYKHVLVNWPYVCMNKPFKPEYSNISWSYDEEQFAAWCEGRTGFPIVDAAMRQMKHL 459 Query: 347 GWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYF 406 G+MH+R RMI A FL KDLL+DWR GE +FM L+DGD ASNNGGW ++AS G D PYF Sbjct: 460 GYMHSRCRMIVACFLAKDLLIDWRKGERFFMESLIDGDFASNNGGWGFSASVGVDPQPYF 519 Query: 407 RIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLN-YPLPIVDHKK 465 RIFNP +Q ++FDP G +IR W+PEL + + +H P++ N YP IV+HK Sbjct: 520 RIFNPLLQSEKFDPDGDYIRKWVPELKDCNKKEVHDPYNRGAGPKAKKNGYPKAIVEHKG 579 Query: 466 ACHHTLNQY 474 L Y Sbjct: 580 CRERALEAY 588 >gi|242786742|ref|XP_002480865.1| deoxyribodipyrimidine photo-lyase Phr1, putative [Talaromyces stipitatus ATCC 10500] gi|218721012|gb|EED20431.1| deoxyribodipyrimidine photo-lyase Phr1, putative [Talaromyces stipitatus ATCC 10500] Length = 771 Score = 307 bits (786), Expect = 3e-81, Method: Compositional matrix adjust. Identities = 176/483 (36%), Positives = 263/483 (54%), Gaps = 21/483 (4%) Query: 13 WLRNDLRITDNKALYAACH---NSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69 W + DLR+ DN+AL A ++ ++ ++I +P+ H S + F +L +Q Sbjct: 280 WFKGDLRLNDNRALKMASELAAKNEIPLVCMYIMSPQDLTAHCSSPARVDFTLRNLRVLQ 339 Query: 70 KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH 129 + L I + E + C Q + LF N +YE++E+RR+ L + L Sbjct: 340 RELGTLDIPLYIETQERRRNIPERIGELCEQWGASHLFANIEYEVDELRREAKLVRLLAD 399 Query: 130 RVIC-KSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQA---DLRSLPVP----- 180 + I ++ DS ++ PG++ + + Y VY+P+ +A + L Q +LR L P Sbjct: 400 KGIAFETAHDSCVVTPGALQSQQGKQYAVYSPWYRAWMGYLHQHGDHNLRVLEPPGKNHE 459 Query: 181 -AIRLTGPVTPSNIP------RFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQ 233 A G + S IP R D Q + M+P GEQ A L +F +V Y ++ Sbjct: 460 SARSHFGDLFDSQIPGASENRRLSDEEKQRFEKMYPEGEQEARKRLDEFITTRVKEYSKK 519 Query: 234 RDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRH 293 R + Q T+ LSPYL+ GVLS R ++ K+ L + SW++E+ WR+FY+H Sbjct: 520 RSMVDGQYTAILSPYLASGVLSARTAVSKAKDANGGYLDGKNASLASWISEVAWRDFYKH 579 Query: 294 LMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRL 353 ++ +P +CM K F P + W D+ L W +G TG+PI+DAAMRQL W+HNR Sbjct: 580 VLVHWPFICMNKCFKPEFTNVTWEYDTDLFTRWTEGQTGYPIVDAAMRQLRHDAWLHNRN 639 Query: 354 RMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTI 413 RMI +SFL KDL++DWR GE YFM L+DGD ASN+GGW + +STG D PYFRIFNP + Sbjct: 640 RMIVSSFLSKDLMIDWRRGERYFMETLIDGDFASNHGGWGFGSSTGVDPQPYFRIFNPLL 699 Query: 414 QGKRFDPQGTFIRHWLPELNNVP-TQYIHAPHS-WLDKNDLSLNYPLPIVDHKKACHHTL 471 Q ++FDP G FIR W+PEL+++ ++ IH P+ YP PIV+H + L Sbjct: 700 QSEKFDPNGDFIRKWVPELSDIKDSKAIHDPYGRGAGAIAQKAGYPRPIVEHAASRVRAL 759 Query: 472 NQY 474 +Y Sbjct: 760 KRY 762 >gi|242786746|ref|XP_002480866.1| deoxyribodipyrimidine photo-lyase Phr1, putative [Talaromyces stipitatus ATCC 10500] gi|218721013|gb|EED20432.1| deoxyribodipyrimidine photo-lyase Phr1, putative [Talaromyces stipitatus ATCC 10500] Length = 593 Score = 307 bits (786), Expect = 3e-81, Method: Compositional matrix adjust. Identities = 176/483 (36%), Positives = 263/483 (54%), Gaps = 21/483 (4%) Query: 13 WLRNDLRITDNKALYAACH---NSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69 W + DLR+ DN+AL A ++ ++ ++I +P+ H S + F +L +Q Sbjct: 102 WFKGDLRLNDNRALKMASELAAKNEIPLVCMYIMSPQDLTAHCSSPARVDFTLRNLRVLQ 161 Query: 70 KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH 129 + L I + E + C Q + LF N +YE++E+RR+ L + L Sbjct: 162 RELGTLDIPLYIETQERRRNIPERIGELCEQWGASHLFANIEYEVDELRREAKLVRLLAD 221 Query: 130 RVIC-KSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQA---DLRSLPVP----- 180 + I ++ DS ++ PG++ + + Y VY+P+ +A + L Q +LR L P Sbjct: 222 KGIAFETAHDSCVVTPGALQSQQGKQYAVYSPWYRAWMGYLHQHGDHNLRVLEPPGKNHE 281 Query: 181 -AIRLTGPVTPSNIP------RFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQ 233 A G + S IP R D Q + M+P GEQ A L +F +V Y ++ Sbjct: 282 SARSHFGDLFDSQIPGASENRRLSDEEKQRFEKMYPEGEQEARKRLDEFITTRVKEYSKK 341 Query: 234 RDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRH 293 R + Q T+ LSPYL+ GVLS R ++ K+ L + SW++E+ WR+FY+H Sbjct: 342 RSMVDGQYTAILSPYLASGVLSARTAVSKAKDANGGYLDGKNASLASWISEVAWRDFYKH 401 Query: 294 LMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRL 353 ++ +P +CM K F P + W D+ L W +G TG+PI+DAAMRQL W+HNR Sbjct: 402 VLVHWPFICMNKCFKPEFTNVTWEYDTDLFTRWTEGQTGYPIVDAAMRQLRHDAWLHNRN 461 Query: 354 RMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTI 413 RMI +SFL KDL++DWR GE YFM L+DGD ASN+GGW + +STG D PYFRIFNP + Sbjct: 462 RMIVSSFLSKDLMIDWRRGERYFMETLIDGDFASNHGGWGFGSSTGVDPQPYFRIFNPLL 521 Query: 414 QGKRFDPQGTFIRHWLPELNNVP-TQYIHAPHS-WLDKNDLSLNYPLPIVDHKKACHHTL 471 Q ++FDP G FIR W+PEL+++ ++ IH P+ YP PIV+H + L Sbjct: 522 QSEKFDPNGDFIRKWVPELSDIKDSKAIHDPYGRGAGAIAQKAGYPRPIVEHAASRVRAL 581 Query: 472 NQY 474 +Y Sbjct: 582 KRY 584 >gi|313624820|gb|EFR94752.1| deoxyribodipyrimidine photo-lyase [Listeria innocua FSL J1-023] Length = 467 Score = 306 bits (785), Expect = 3e-81, Method: Compositional matrix adjust. Identities = 185/485 (38%), Positives = 263/485 (54%), Gaps = 39/485 (8%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSH-FIYASLLQVQ 69 ++W R DLR+ DNKALY A D +I +F PEQ+ I SH +AS+ Q Sbjct: 4 VMWFRRDLRVNDNKALYHAXXEED--LILLFQVNPEQF----IKGSPSHQAFFASVAHFQ 57 Query: 70 KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRV---TKLFYNRQYEINEVRRDKLLEKR 126 + L++ H F + IE L L++++ K+F+NR RD+ + Sbjct: 58 QELNKNT-----HLQIMFGEPIELLKQ--LKEKIPTWDKVFFNRDETGYGASRDEAAQAF 110 Query: 127 L-QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLR-SLPVPAIRL 184 + + S+ DS L + A + YK++TP+ K + + + L+ +L IR Sbjct: 111 FADNEITVHSYHDSYLHSAEEVKKSATEYYKIFTPYYKKWREEIKEMPLKVTLKPENIR- 169 Query: 185 TGPVTPSNIPRFFDYPFQAID--PMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGT 242 S P++ + + I P F GE+ A L F KE + Y + RD+PA+ T Sbjct: 170 ----KESLFPKYEEQFRELIQDLPAFDSGEKAANTRLANFVKEDLASYDKARDVPALDKT 225 Query: 243 SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVC 302 S LS YL G +S R W L++E + G ++ EL WR+FY + +P Sbjct: 226 SHLSRYLRTGEISIRTVWQALQKE------EATEGRATFEKELCWRDFYNMIYVSFPK-Q 278 Query: 303 MGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLV 362 +P IEW + + W++G TGFP++DAAMRQL GWMHNRLRMITASFL Sbjct: 279 KNEPIQENYRFIEWENNREFFKKWQEGQTGFPLVDAAMRQLKETGWMHNRLRMITASFLT 338 Query: 363 KDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQG 422 KDLL+DWR GE+YF L+D D ASN GGWQWAASTG D+VPYFRIFNPT Q ++FDP G Sbjct: 339 KDLLIDWRFGEKYFQQMLIDYDPASNIGGWQWAASTGTDAVPYFRIFNPTTQSEKFDPDG 398 Query: 423 TFIRHWLPELNNVPTQYIHAPHSWLDKND------LSLNYPLPIVDHKKACHHTLNQYYA 476 TFIR ++ EL ++P ++IH P + L +YPLPI+DHK+ + +Y Sbjct: 399 TFIRKYVKELRDLPDKFIHQPEKMSETEQQEHGLILGKDYPLPIIDHKERRKLAIARYEF 458 Query: 477 AKKQS 481 +K+ S Sbjct: 459 SKEHS 463 >gi|156744316|ref|YP_001434445.1| deoxyribodipyrimidine photo-lyase [Roseiflexus castenholzii DSM 13941] gi|156235644|gb|ABU60427.1| Deoxyribodipyrimidine photo-lyase [Roseiflexus castenholzii DSM 13941] Length = 487 Score = 306 bits (785), Expect = 4e-81, Method: Compositional matrix adjust. Identities = 183/488 (37%), Positives = 250/488 (51%), Gaps = 24/488 (4%) Query: 13 WLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQKSL 72 W R DLR+ DN AL+ A SD +VI +FI A + F+ A+L + +L Sbjct: 6 WFRRDLRLHDNPALHTASIRSDGRVIPLFILDDAILHAPRTGAARIAFMIAALRDLDANL 65 Query: 73 SQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHRVI 132 +G + D + + + T + +NR Y RRD +E L+ + Sbjct: 66 RARGSRLVIRRGRTLD----VIRAMVQETGATGVAWNRDYTPFARRRDAQVEAALRDLNV 121 Query: 133 CKSF-DDSVLLPPGSILNHALQMYKVYTPFRK---ALIQNLVQADLRSLPVPAIR-LTGP 187 S +D+V+ P + + Y VYTP+R+ AL + LR++ P +R Sbjct: 122 ETSIAEDAVVFSPDDVRTGDGRPYTVYTPYRRRWRALTEQRRAEVLRAIEPPLLRPAPEA 181 Query: 188 VTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKF----CKEKVYYYVEQRDIPAIQGTS 243 V +P D + P GE + L F + Y E RD+ A TS Sbjct: 182 VADQTVPDHADLGIVVSQRIPPGGETHGAARLAAFVDLAAAHSIAGYAEGRDLLAEPATS 241 Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFS---WLNELIWREFYRHLMAFYPS 300 +LSPYL G ++PRQ R +D++ S W+ EL WR+FY ++ YP Sbjct: 242 RLSPYLRFGCVAPRQAL-RAALRLLDIVGDDHRTVRSIETWIGELAWRDFYYQILWHYPH 300 Query: 301 VCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASF 360 V + F P + + W D L AWK+G TG+PIIDAAM QL WMHNR RMI ASF Sbjct: 301 VVR-RSFKPQYDALAWENDPALFDAWKEGRTGYPIIDAAMHQLRQEAWMHNRARMIVASF 359 Query: 361 LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDP 420 L KDLL+DWR GE YFM QL+DGD A+NNGGWQW+A TG D+ PYFRIFNP QG++FDP Sbjct: 360 LTKDLLIDWRWGERYFMQQLVDGDHAANNGGWQWSAGTGTDAQPYFRIFNPVSQGQKFDP 419 Query: 421 QGTFIRHWLPELNNVPTQYIHAPHSWLDKND------LSLNYPLPIVDHKKACHHTLNQY 474 +G ++R +LPEL VP +YIHAP + + +YP PIVDH + L Y Sbjct: 420 KGLYVRRYLPELAQVPDRYIHAPWTMPRAEQQRCGVVIGRDYPAPIVDHAERRMRALALY 479 Query: 475 YAAKKQSL 482 A +L Sbjct: 480 RAVSSVAL 487 >gi|47169691|dbj|BAD18969.1| photolyase [Bipolaris oryzae] Length = 634 Score = 306 bits (784), Expect = 5e-81, Method: Compositional matrix adjust. Identities = 182/495 (36%), Positives = 260/495 (52%), Gaps = 38/495 (7%) Query: 13 WLRNDLRITDNKALYAACHNSDAK---VIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69 W + DLR+ DN L A + +K ++AV+I +P+ W H +S + F S+ ++ Sbjct: 142 WFKRDLRVRDNTGLSKAAELAKSKGIGLVAVWIMSPQDWEAHLVSPPKCDFELRSVQLLK 201 Query: 70 KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD-KLLEKRLQ 128 + L + I + + L L+ V +F N +YE +E+RR+ +L+ L+ Sbjct: 202 QELEELDIPLYIETVHERKNIKKRLVEMALEWNVKSVFCNLEYEPDELRREERLVRMMLE 261 Query: 129 HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQA----DLRSLP------ 178 + D ++PPGS+ + Y VYTP+ +A I L + RS+P Sbjct: 262 KGINMDPQHDDCVVPPGSLKTGTGKQYAVYTPWYRAWIAYLHAHPHLLNERSMPEKNPTG 321 Query: 179 ------------VPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEK 226 VP + +T RF ++P GE A+ L +F EK Sbjct: 322 FREKFTKLFDSRVPDLPDCKSLTAEEKERFHH--------LWPAGEAAAIDRLERFLTEK 373 Query: 227 VYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKE-EFVDLLIKPKSGAFSWLNEL 285 V Y + R+ PA+ T ++S + + G L+ R ++ V L K G W+ E+ Sbjct: 374 VIKYKDTRNFPALNSTGRISAHHAAGTLAARTSVRMARDINSVKKLDGGKEGIKGWIGEV 433 Query: 286 IWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNT 345 WR+FYRH++ +P VCM KPF IEW + +AW QG TG+PI+DAAMR L Sbjct: 434 AWRDFYRHVLVHWPYVCMNKPFKYEYTNIEWEYNDAHFEAWTQGRTGYPIVDAAMRCLKH 493 Query: 346 IGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPY 405 G+MHNRLRMITASFL K LL+DWR+GE+YF++ L+DGD ASNNGGW ++ASTG D PY Sbjct: 494 TGYMHNRLRMITASFLAKHLLLDWRLGEQYFITHLIDGDFASNNGGWGFSASTGVDPQPY 553 Query: 406 FRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPH---SWLDKNDLSLNYPLPIVD 462 FRIFNP Q ++FD QG FIR W+ EL +V IH P+ K YP PIV+ Sbjct: 554 FRIFNPWTQSEKFDEQGEFIRLWVKELEDVQGAAIHNPYQAKGEAAKIAKKNGYPEPIVE 613 Query: 463 HKKACHHTLNQYYAA 477 HK A L +Y A Sbjct: 614 HKFARERCLARYKAG 628 >gi|312211251|emb|CBX91336.1| hypothetical protein [Leptosphaeria maculans] Length = 811 Score = 306 bits (783), Expect = 7e-81, Method: Compositional matrix adjust. Identities = 183/506 (36%), Positives = 266/506 (52%), Gaps = 38/506 (7%) Query: 2 KATTAMSVHLVWLRNDLRITDNKAL---YAACHNSDAKVIAVFIATPEQWRQHGISARQS 58 + T+ + W + DLR+ DN L Y ++ VI V+I +P+ W H +S + Sbjct: 308 EGGTSGDAVIHWFKRDLRLRDNTGLSKAYELAKENNIGVIGVWIMSPQDWEAHLVSPAKC 367 Query: 59 HFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVR 118 F S+ + K L++ I S + + + V ++ N +YE +E+R Sbjct: 368 DFELRSVEALSKELNELDIPLHIETVSRRKEVAYRMVELAQEWNVKNVYCNLEYEPDELR 427 Query: 119 RDKLLEKRLQHRVICKSFD---DSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLR 175 R++ L + + + I +FD D ++PPGS+ + Y VY+P+ ++ + A L Sbjct: 428 REERLVRLMLQKGI--NFDPQHDDCVVPPGSLKTGGGKQYAVYSPWFRSWL-----AHLH 480 Query: 176 SLPVPAIRLTGPV-TPSNIPRFFDYPFQAIDP------------------MFPIGEQNAL 216 + P T P PS F F + P ++P GE A+ Sbjct: 481 AHPHLLNERTMPEKNPSGFRERFAKLFDSTIPELPESKSLTEDQRKQFHHLWPAGEAAAI 540 Query: 217 HILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEF--VDLLIKP 274 LR+F EKV Y + R+ P + T ++S + + G L+ R RL + L Sbjct: 541 ERLRRFLTEKVAKYNDTRNFPNLNSTGRVSAHHAAGTLAARTSV-RLARDMNTSKKLDGG 599 Query: 275 KSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFP 334 K G W++E+ WR+FYRH++ +P VCM KPF IEW + ++W QG TG+P Sbjct: 600 KDGIKVWISEVAWRDFYRHVLVHWPYVCMNKPFKYEYTNIEWEYNDPHFRSWTQGKTGYP 659 Query: 335 IIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQW 394 I+DAAMR LN +MHNRLRMITASFL K LL+DWR+GE+YF+S L+DGD ASNNGGW + Sbjct: 660 IVDAAMRSLNQTAYMHNRLRMITASFLAKHLLLDWRLGEQYFISHLIDGDFASNNGGWGF 719 Query: 395 AASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKN---D 451 +ASTG D PYFRIFNP +Q ++FD +G FIR W+PEL V IH P++ K Sbjct: 720 SASTGVDPQPYFRIFNPWLQSEKFDAEGDFIRKWVPELQGVEGAAIHNPYAAGGKAAQIA 779 Query: 452 LSLNYPLPIVDHKKACHHTLNQYYAA 477 YP PIV+HK A L +Y A Sbjct: 780 KKNRYPEPIVEHKFARERCLARYKAG 805 >gi|189209473|ref|XP_001941069.1| deoxyribodipyrimidine photo-lyase [Pyrenophora tritici-repentis Pt-1C-BFP] gi|187977162|gb|EDU43788.1| deoxyribodipyrimidine photo-lyase [Pyrenophora tritici-repentis Pt-1C-BFP] Length = 632 Score = 305 bits (780), Expect = 1e-80, Method: Compositional matrix adjust. Identities = 179/492 (36%), Positives = 265/492 (53%), Gaps = 38/492 (7%) Query: 13 WLRNDLRITDNKALYAACHNSDAK---VIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69 W + DLRI DN L A + + VI V++ +P+ W H +S + F S+ ++ Sbjct: 140 WFKRDLRIRDNTGLSKAAELAKERGIGVIGVWLMSPQDWEAHIVSPPKCDFELRSVELLK 199 Query: 70 KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD-KLLEKRLQ 128 K L + I + + L + V +F N +YE +E+RR+ +L+ L+ Sbjct: 200 KELEELDIPLYIETIPERRNVTKRLVELAQEWNVKNVFCNLEYEPDELRREERLVRMMLE 259 Query: 129 HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNL-VQADL---RSLP------ 178 + + D ++PPGS+ + A + Y VY+P+ +A I +L DL R +P Sbjct: 260 KGIGFDPYHDDCVVPPGSLKSGAGKQYAVYSPWCRAWIAHLHSHPDLLIERPMPGQNPAN 319 Query: 179 ------------VPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEK 226 VP+I + +TP RF ++P GE A+ L +F EK Sbjct: 320 FRNKFSKLFDASVPSIPESKSLTPEEKERF--------SRLWPAGEAAAIDRLERFLVEK 371 Query: 227 VYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKE-EFVDLLIKPKSGAFSWLNEL 285 + Y + R+ PA+ T ++S + + G L+ R ++ L K G +W+ E+ Sbjct: 372 IVKYKDTRNFPALNSTGRVSVHHAAGTLAARTSIRMARDINSAQKLDGGKDGVKTWIGEV 431 Query: 286 IWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNT 345 WR+FYRH++ +P VCM KPF I+W ++ AW +G TG+PI+DAAMR LN Sbjct: 432 AWRDFYRHVLVHWPYVCMNKPFKYEYTNIDWEYNTAHFTAWTRGQTGYPIVDAAMRCLNH 491 Query: 346 IGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPY 405 G+MHNRLRMITASFL K LL+DWR+GE+YF+S L+DGD ASNNGGW ++ASTG D PY Sbjct: 492 TGYMHNRLRMITASFLAKHLLLDWRLGEQYFLSHLIDGDFASNNGGWGFSASTGVDPQPY 551 Query: 406 FRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDK---NDLSLNYPLPIVD 462 FRIFNP IQ ++FD G FIR W+ EL +V + +H P+ + + YP PIV+ Sbjct: 552 FRIFNPWIQSEKFDADGEFIRTWVEELKDVQGKDVHNPYKAGGRAMETARRMGYPEPIVE 611 Query: 463 HKKACHHTLNQY 474 H A L +Y Sbjct: 612 HTVARARCLKRY 623 >gi|85115208|ref|XP_964834.1| hypothetical protein NCU08626 [Neurospora crassa OR74A] gi|130155|sp|P27526|PHR_NEUCR RecName: Full=Deoxyribodipyrimidine photo-lyase; AltName: Full=DNA photolyase; AltName: Full=Photoreactivating enzyme gi|3054|emb|CAA41549.1| deoxyribodipyrimidine photolyase [Neurospora crassa] gi|28926629|gb|EAA35598.1| hypothetical protein NCU08626 [Neurospora crassa OR74A] Length = 642 Score = 305 bits (780), Expect = 1e-80, Method: Compositional matrix adjust. Identities = 179/498 (35%), Positives = 261/498 (52%), Gaps = 39/498 (7%) Query: 13 WLRNDLRITDNKALYAACH---NSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69 W + DLR+ DN++L+ A + +I +++ +PE H + + F+ +L ++ Sbjct: 140 WFKMDLRLHDNRSLWLASQKAKEAGVPLICLYVLSPEDLEAHLRAPIRVDFMLRTLEVLK 199 Query: 70 KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH 129 L GI + + + LF +YE++E+RR+ L K L Sbjct: 200 TDLEDLGIPLWVETVEKRKEVPTKIKELMKSWGASHLFCAMEYEVDELRREAKLVKLLAE 259 Query: 130 -----RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL 184 ++ D+ ++ PG++ + + Y VY+P+ +A I++ ++ + L + Sbjct: 260 GEKGEKMAADVVHDTCVVMPGALQSGSGGQYAVYSPWFRAWIKH-IEENPECLEI--YEK 316 Query: 185 TGPVTPS-----------NIP------RFFDYPFQAIDPMFPIGEQNALHILRKFCKEKV 227 GP P +IP R D ++P GE AL L KFC E + Sbjct: 317 PGPNPPGTKEKHENLFACSIPEAPEGKRLRDDEKARYHSLWPAGEHEALKRLEKFCDEAI 376 Query: 228 YYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEF-VDLLIKPKSGAFSWLNELI 286 Y E+R+IPA+QGTS LS + + G LS R ++ L G W++E+ Sbjct: 377 GKYAERRNIPAMQGTSNLSVHFASGTLSARTAIRTARDRNNTKKLNGGNEGIQRWISEVA 436 Query: 287 WREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTI 346 WR+FY+H++ +P VCM KPF P IEW+ + AW QG TGFPIIDAAMRQ+ + Sbjct: 437 WRDFYKHVLVHWPYVCMNKPFKPTYSNIEWSYNVDHFHAWTQGRTGFPIIDAAMRQVLST 496 Query: 347 GWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYF 406 G+MHNRLRMI ASFL KDLLVDWR+GE YFM L+DGD ASNNGGW +AAS G D PYF Sbjct: 497 GYMHNRLRMIVASFLAKDLLVDWRMGERYFMEHLIDGDFASNNGGWGFAASVGVDPQPYF 556 Query: 407 RIFNPTIQGKRFDPQGTFIRHWLPELNNVPT------QYIHAPHS----WLDKNDLSLNY 456 R+FNP +Q ++FDP G +IR W+ EL ++P IH P+ + K Y Sbjct: 557 RVFNPLLQSEKFDPDGDYIRKWVEELRDLPELKGGKGGEIHDPYGRGSEKVKKKLEEKGY 616 Query: 457 PLPIVDHKKACHHTLNQY 474 P PIV+H A L+ Y Sbjct: 617 PRPIVEHSGARDRALDAY 634 >gi|323529228|ref|YP_004231380.1| DNA photolyase FAD-binding protein [Burkholderia sp. CCGE1001] gi|323386230|gb|ADX58320.1| DNA photolyase FAD-binding protein protein [Burkholderia sp. CCGE1001] Length = 499 Score = 304 bits (779), Expect = 2e-80, Method: Compositional matrix adjust. Identities = 192/502 (38%), Positives = 269/502 (53%), Gaps = 47/502 (9%) Query: 6 AMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPE---------QWRQHGISA- 55 + + LVW R DLR TDN ALY A + + +V VF+ Q R G A Sbjct: 10 SFNTGLVWFRRDLRTTDNAALYYALKHCE-RVWCVFVFDTTILQPLVDRWQTRHPGTQAQ 68 Query: 56 -RQSHFIYASLLQVQKSLSQKG--IVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQY 112 R+ FI SL ++ ++L +G +V Y D + + Q +V +F N Y Sbjct: 69 DRRVEFILGSLRELDEALRAQGGGLVVLY------GDPADLVPKLADQLQVDAVFINHDY 122 Query: 113 EINEVRRDKLLEKRL-QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQ 171 E + RD+ + +RL + +F D V+ +L + + V+TP++ A ++ L Sbjct: 123 EPAAIERDEAVRERLAETGRTFLTFKDQVIFERAELLTGQKKPFTVFTPYKNAWLKQLTS 182 Query: 172 ADLRSLPVP--AIRLTG--PVTPSNIPRFFDY---PFQAIDPMFPIGEQNALHILRKFCK 224 DL+ PV A RL P +P P + P G + A +L F Sbjct: 183 FDLKPYPVETYATRLASLPPALDRQLPTLEQLGFAPGNLAELDLPTGMRGAQRLLDDFLT 242 Query: 225 EKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKS-GAFSWLN 283 ++ Y E+RD PA++G S LS +L G +S R RL E + ++P GA +WL+ Sbjct: 243 -RLDSYAERRDFPAVKGPSYLSVHLRFGTVSIRTL-ARLAHE---MSLQPDGRGAATWLS 297 Query: 284 ELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHL---LQAWKQGYTGFPIIDAAM 340 ELIWR+FY ++A +P + G F +++ W + AW +G TG+P+IDAAM Sbjct: 298 ELIWRDFYFMILAHHPRLAGGASFKEEYDRLRWEQGPEADAAFAAWCEGRTGYPLIDAAM 357 Query: 341 RQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGN 400 QLN G+MHNRLRM+TASFLVKDL VDWR+GE YF QL D D A+NNGGWQWAASTG Sbjct: 358 LQLNRTGYMHNRLRMVTASFLVKDLGVDWRLGERYFAEQLNDYDFAANNGGWQWAASTGC 417 Query: 401 DSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND--------L 452 D+ PYFRIFNP Q ++FD G FI+ +LP+L +P ++IHAP WL L Sbjct: 418 DAQPYFRIFNPITQSEKFDADGRFIKRYLPQLGKLPAKWIHAP--WLAGAQRLAEFGVAL 475 Query: 453 SLNYPLPIVDHKKACHHTLNQY 474 NYP PIVDH +A TL ++ Sbjct: 476 GDNYPAPIVDHAQARARTLARF 497 >gi|83770999|dbj|BAE61131.1| unnamed protein product [Aspergillus oryzae] Length = 624 Score = 304 bits (778), Expect = 2e-80, Method: Compositional matrix adjust. Identities = 179/493 (36%), Positives = 264/493 (53%), Gaps = 23/493 (4%) Query: 5 TAMSVHLVWLRNDLRITDNKAL---YAACHNSDAKVIAVFIATPEQWRQHGISARQSHFI 61 A VH W ++DLR+ DN+AL Y +IA++I +PE H S + Sbjct: 129 NAAVVH--WFKSDLRLHDNRALRKAYEVAREHSIPLIALYILSPEDLTAHLSSPARVDLT 186 Query: 62 YASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD- 120 +L Q++ L + I + D + + C + LF N +YE++E+RR+ Sbjct: 187 LRTLEQLKLDLGELDIPLHMETQESRRDIPQRIIHLCQEWGANHLFANIEYEVDELRREA 246 Query: 121 KLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKA----LIQN----LVQA 172 KL+ +++ + D+ ++PPG + + + Y VY+P+ ++ L+ N V Sbjct: 247 KLVRLCVENGIAFDVLHDTCVVPPGLLSSQQGKQYAVYSPWFRSWQMFLMDNPEHLEVSE 306 Query: 173 DLRSLPVPAIRLTGPVTPSNIP------RFFDYPFQAIDPMFPIGEQNALHILRKFCKEK 226 + S P A ++ + S +P R D + ++P GE L L F +EK Sbjct: 307 EPGSNPGNARKVFKDLFASEVPGAPNNKRLSDEEREHFRQLYPAGEHEGLDRLESFLEEK 366 Query: 227 VYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELI 286 Y + R+ + Q TS LSPY + G LS R + K+ + L + + G SW++E+ Sbjct: 367 ATAYDDMRNSLSKQTTSVLSPYFASGSLSARTAVAKAKKANKNQLDRNELGFVSWISEVA 426 Query: 287 WREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTI 346 WR+FY+H++ +P +CM K F P +EW + AW +G TGFPI+DAAMRQ+ + Sbjct: 427 WRDFYKHVLVRWPFICMNKCFKPEFTDLEWEYNMDYFNAWCEGRTGFPIVDAAMRQMKSS 486 Query: 347 GWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYF 406 WMHNR RMI ASFL KDLL+DWR GE YFM L+DGD ASN+GGW + +STG D PYF Sbjct: 487 AWMHNRSRMIVASFLSKDLLIDWRRGERYFMEHLIDGDFASNHGGWGFGSSTGVDPQPYF 546 Query: 407 RIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSL--NYPLPIVDHK 464 RIF+P Q +RFDP G +IR W+PEL + IH P+ DL+ YP PIVDH Sbjct: 547 RIFSPLRQSERFDPDGDYIRRWVPELREIEGSAIHDPYD-RGAGDLAEKNGYPRPIVDHA 605 Query: 465 KACHHTLNQYYAA 477 L++Y A Sbjct: 606 TRRALALDRYKKA 618 >gi|307726566|ref|YP_003909779.1| Deoxyribodipyrimidine photo-lyase [Burkholderia sp. CCGE1003] gi|307587091|gb|ADN60488.1| Deoxyribodipyrimidine photo-lyase [Burkholderia sp. CCGE1003] Length = 499 Score = 304 bits (778), Expect = 3e-80, Method: Compositional matrix adjust. Identities = 191/506 (37%), Positives = 273/506 (53%), Gaps = 49/506 (9%) Query: 3 ATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATP-------EQW--RQHGI 53 +T LVW R DLR TDN ALY A + + +V VF+ ++W R G Sbjct: 7 STDTFDTGLVWFRRDLRHTDNAALYYALKHCE-RVWCVFVFDTTILQPLIDKWQSRHPGT 65 Query: 54 SA--RQSHFIYASLLQVQKSLSQKG--IVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYN 109 A R+ FI ASL ++ ++L +G +V Y D ++ + + V +F N Sbjct: 66 QAQDRRVEFILASLHELDEALRARGGGLVVLY------GDPVDLVPKLAAELEVDAVFAN 119 Query: 110 RQYEINEVRRDKLLEKRLQHRV-ICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQN 168 YE + RD+ + +RL ++F D V+ +L + + V+TP++ A ++ Sbjct: 120 HDYEPAAIERDEAVRERLSDAGRALQTFKDQVIFERAELLTGQNKPFTVFTPYKNAWLKQ 179 Query: 169 LVQADLRSLPVP--AIRLTGPVTPS------NIPRFFDYPFQAIDPMFPIGEQNALHILR 220 L DL+ PV A RL P+ P + + P + P G A +L Sbjct: 180 LTSFDLKPFPVETYANRLA-PLPPRLNRQLPTLEQLGFAPGNLGELELPTGMSGAQRLLD 238 Query: 221 KFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKS-GAF 279 F ++ Y E+RD PA +G S LS +L G +S R RL E + ++P GA Sbjct: 239 DFLS-RIDSYAERRDFPAAKGPSYLSVHLRFGTVSIRTL-ARLAHE---MSLQPDGRGAA 293 Query: 280 SWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHL---LQAWKQGYTGFPII 336 +WL+EL+WR+FY ++A +P + G F +++ W + AW +G TG+P+I Sbjct: 294 TWLSELVWRDFYFMILAHHPRLAAGASFRADYDRLRWEQGPEAEAAFAAWCEGRTGYPLI 353 Query: 337 DAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAA 396 DAAM QLN G+MHNRLRM+TASFLVKDL VDWR+GE YF QL D D A+NNGGWQWAA Sbjct: 354 DAAMLQLNRTGYMHNRLRMVTASFLVKDLGVDWRLGERYFAEQLNDYDFAANNGGWQWAA 413 Query: 397 STGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND----- 451 STG D+ PYFRIFNP Q ++FD +G FI+ +LP+L +P ++IHAP WL Sbjct: 414 STGCDAQPYFRIFNPVTQSEKFDAEGRFIKRYLPQLAKLPAKWIHAP--WLAGAQRLAEY 471 Query: 452 ---LSLNYPLPIVDHKKACHHTLNQY 474 L +YP PIVDH +A TL ++ Sbjct: 472 GVMLGEDYPAPIVDHAQARARTLARF 497 >gi|119899747|ref|YP_934960.1| deoxyribodipyrimidine photo-lyase [Azoarcus sp. BH72] gi|119672160|emb|CAL96074.1| deoxyribodipyrimidine photo-lyase [Azoarcus sp. BH72] Length = 503 Score = 304 bits (778), Expect = 3e-80, Method: Compositional matrix adjust. Identities = 180/496 (36%), Positives = 270/496 (54%), Gaps = 42/496 (8%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISA-RQSHFIYASL 65 M+V LVW R DLR D+ ALY A + +V F+ + A R+ FI+A++ Sbjct: 24 MTVALVWFRRDLRCVDHAALYHALREHE-RVYCAFVFDTDILDALPTRADRRVEFIHAAV 82 Query: 66 LQVQKSL---------SQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINE 116 +++ ++L S G++ ++ + E + + V ++ NR YE Sbjct: 83 VELDRALEALSREAGGSGSGLIVRHGRAQ------EAIPALAQALGVDAVYVNRDYEPAA 136 Query: 117 VRRDKLLEKRL-QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLR 175 + RD+ + +RL +H + F D V+ +L A Q + V+TP++ A ++ L L+ Sbjct: 137 IARDRAVAERLAEHGRTLRDFKDQVIFDRDEVLTQAGQPFSVFTPYKNAWLRKLDPFYLQ 196 Query: 176 SLPVP--AIRLTGPVTPSNIPRFFDYPFQAIDP---MFPIGEQNALHILRKFCKEKVYYY 230 + P+ A RL +P F+ D P G A + FC ++ Y Sbjct: 197 AYPIAPRARRLAPKPAGEGVPALGRIGFEPTDLRGLALPTGASGARALFGDFCG-RIEDY 255 Query: 231 VEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREF 290 RD PA++G S LS +L G + ++E + + +GA +WL+ELIWR+F Sbjct: 256 RIARDFPAVKGVSYLSTHLRFGTIP-------VRELAAYAVHQGGAGAQTWLSELIWRDF 308 Query: 291 YRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMH 350 Y+ ++ +P V + + F P ++I W+ L AW++G TG+PI+DA MRQL G+MH Sbjct: 309 YQMILWHHPRV-VDQAFRPEFDRIRWDDAPALFDAWREGRTGYPIVDAGMRQLLRSGYMH 367 Query: 351 NRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFN 410 NRLRMI ASFL KDL VDWR+GE +F + L D DLA+NNGGWQWAASTG D+ PYFRIFN Sbjct: 368 NRLRMIVASFLTKDLGVDWRLGERHFAAHLNDYDLAANNGGWQWAASTGCDAQPYFRIFN 427 Query: 411 PTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSW-LDKN-------DLSLNYPLPIVD 462 P Q ++FDP+G FIR ++PEL VP ++IHAP W +D + +YP P+VD Sbjct: 428 PVTQSQKFDPEGRFIRRYVPELARVPDRHIHAP--WQMDAATQSRACVQIGRDYPAPVVD 485 Query: 463 HKKACHHTLNQYYAAK 478 H A TL ++ K Sbjct: 486 HALARERTLARFAVTK 501 >gi|317148478|ref|XP_001822264.2| deoxyribodipyrimidine photo-lyase [Aspergillus oryzae RIB40] Length = 588 Score = 303 bits (777), Expect = 3e-80, Method: Compositional matrix adjust. Identities = 179/493 (36%), Positives = 264/493 (53%), Gaps = 23/493 (4%) Query: 5 TAMSVHLVWLRNDLRITDNKAL---YAACHNSDAKVIAVFIATPEQWRQHGISARQSHFI 61 A VH W ++DLR+ DN+AL Y +IA++I +PE H S + Sbjct: 93 NAAVVH--WFKSDLRLHDNRALRKAYEVAREHSIPLIALYILSPEDLTAHLSSPARVDLT 150 Query: 62 YASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD- 120 +L Q++ L + I + D + + C + LF N +YE++E+RR+ Sbjct: 151 LRTLEQLKLDLGELDIPLHMETQESRRDIPQRIIHLCQEWGANHLFANIEYEVDELRREA 210 Query: 121 KLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKA----LIQN----LVQA 172 KL+ +++ + D+ ++PPG + + + Y VY+P+ ++ L+ N V Sbjct: 211 KLVRLCVENGIAFDVLHDTCVVPPGLLSSQQGKQYAVYSPWFRSWQMFLMDNPEHLEVSE 270 Query: 173 DLRSLPVPAIRLTGPVTPSNIP------RFFDYPFQAIDPMFPIGEQNALHILRKFCKEK 226 + S P A ++ + S +P R D + ++P GE L L F +EK Sbjct: 271 EPGSNPGNARKVFKDLFASEVPGAPNNKRLSDEEREHFRQLYPAGEHEGLDRLESFLEEK 330 Query: 227 VYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELI 286 Y + R+ + Q TS LSPY + G LS R + K+ + L + + G SW++E+ Sbjct: 331 ATAYDDMRNSLSKQTTSVLSPYFASGSLSARTAVAKAKKANKNQLDRNELGFVSWISEVA 390 Query: 287 WREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTI 346 WR+FY+H++ +P +CM K F P +EW + AW +G TGFPI+DAAMRQ+ + Sbjct: 391 WRDFYKHVLVRWPFICMNKCFKPEFTDLEWEYNMDYFNAWCEGRTGFPIVDAAMRQMKSS 450 Query: 347 GWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYF 406 WMHNR RMI ASFL KDLL+DWR GE YFM L+DGD ASN+GGW + +STG D PYF Sbjct: 451 AWMHNRSRMIVASFLSKDLLIDWRRGERYFMEHLIDGDFASNHGGWGFGSSTGVDPQPYF 510 Query: 407 RIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSL--NYPLPIVDHK 464 RIF+P Q +RFDP G +IR W+PEL + IH P+ DL+ YP PIVDH Sbjct: 511 RIFSPLRQSERFDPDGDYIRRWVPELREIEGSAIHDPYD-RGAGDLAEKNGYPRPIVDHA 569 Query: 465 KACHHTLNQYYAA 477 L++Y A Sbjct: 570 TRRALALDRYKKA 582 >gi|295700812|ref|YP_003608705.1| deoxyribodipyrimidine photo-lyase [Burkholderia sp. CCGE1002] gi|295440025|gb|ADG19194.1| Deoxyribodipyrimidine photo-lyase [Burkholderia sp. CCGE1002] Length = 499 Score = 303 bits (775), Expect = 6e-80, Method: Compositional matrix adjust. Identities = 193/497 (38%), Positives = 261/497 (52%), Gaps = 47/497 (9%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVF---------IATPEQWRQHG--ISARQSH 59 LVW R DLR TD+ ALY A + + +V VF I Q R G + R+ Sbjct: 15 LVWFRRDLRNTDHAALYYALEHCE-RVWCVFVFDTTILQPIVDAWQTRHPGEPVKDRRID 73 Query: 60 FIYASLLQVQKSL--SQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEV 117 FI ASL ++ +L + G+V Y D E + + RV +F N YE + Sbjct: 74 FILASLAELDDALRANGGGLVVLY------GDPAELVPKLAAELRVDAVFANHDYEPVAI 127 Query: 118 RRDKLLEKRLQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRS 176 RD + +RL + +F D + +LN + + V+TP++ A ++ L DL+ Sbjct: 128 ERDATVGERLAEKGRQWLTFKDQTIFERDELLNGQDKPFAVFTPYKNAWLKQLSAFDLKP 187 Query: 177 LPVPAIRLTGPVTPSNIPRFFDY-------PFQAIDPMFPIGEQNALHILRKFCKEKVYY 229 PV P + R P D P G A +L F ++ Sbjct: 188 YPVETYAKHLAALPPKLDRRLPTLDQLCFAPSNLTDLPLPAGMSGAQQLLDDFLT-RIDS 246 Query: 230 YVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKS-GAFSWLNELIWR 288 Y E+RD PA +G S LS +L G +S R RL E + ++P GA +WL+ELIWR Sbjct: 247 YAERRDFPAAKGPSYLSVHLRFGTVSIRTL-ARLAYE---MSLQPDGKGAATWLSELIWR 302 Query: 289 EFYRHLMAFYPSVCMGKPFIPWTEKIEWNKD---SHLLQAWKQGYTGFPIIDAAMRQLNT 345 +FY ++A +P + G PF P E + W K AW G TG+P++DAAM QLN Sbjct: 303 DFYFMVLAHHPRIAKGAPFKPEYEHLRWEKGPSADAAFAAWCDGRTGYPLVDAAMLQLNH 362 Query: 346 IGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPY 405 G+MHNRLRM+TASFL KDL VDWR+GE YF L D D ++NNGGWQWAASTG D+ PY Sbjct: 363 TGYMHNRLRMVTASFLAKDLGVDWRLGERYFADLLNDFDFSANNGGWQWAASTGCDAQPY 422 Query: 406 FRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND--------LSLNYP 457 FRIFNP Q ++FDP G FI+ +LP+L +P ++IHAP WL + L NYP Sbjct: 423 FRIFNPVTQSEKFDPDGRFIKRYLPQLAQLPAKWIHAP--WLAGAERLAEYGVVLGGNYP 480 Query: 458 LPIVDHKKACHHTLNQY 474 PIVDH +A TL +Y Sbjct: 481 EPIVDHAQARERTLIRY 497 >gi|297585056|ref|YP_003700836.1| deoxyribodipyrimidine photo-lyase [Bacillus selenitireducens MLS10] gi|297143513|gb|ADI00271.1| Deoxyribodipyrimidine photo-lyase [Bacillus selenitireducens MLS10] Length = 474 Score = 302 bits (774), Expect = 6e-80, Method: Compositional matrix adjust. Identities = 179/480 (37%), Positives = 249/480 (51%), Gaps = 22/480 (4%) Query: 11 LVWLRNDLRITDNKALYAA---CHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67 +VW RNDLR+ D+ A+ A + D K++ VF + + + R +F + +L Sbjct: 7 VVWFRNDLRLNDHPAIDEALTFAEDHDTKILCVFHIHDDLFSH--LHTRHDYF-FQTLRH 63 Query: 68 VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127 L + I ++ + L Y Q V F ++ Y RD+ + Sbjct: 64 FSDDLKSRNIAIRFLYGEVTEAFASLLKEYSGVQAV---FASKDYTSFATERDRTVRTLF 120 Query: 128 QHRVICKSFDDSV-LLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 + R I + S L P SI+ YKVYTP+ K ++ V+ L T Sbjct: 121 EERNIRFTLTVSNHLQEPSSIMKDDGTPYKVYTPYSKQWLKKPVRGLLAGHEKKLRERTC 180 Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246 V N + D+ + +GE +A L +F +++ +Y E RD PA+ GTS+LS Sbjct: 181 EVA-MNRGKLDDFLASSDRTWQALGEDHAHERLEQFVTDRLTHYGESRDFPAVAGTSRLS 239 Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP 306 PYL GVLS Q ++ L K A +++ EL WR+FY ++ ++ + Sbjct: 240 PYLKTGVLSVAQVYHAA----YPLFEKGDDAAVTFIKELAWRDFYT-MIHYHFENLRNQE 294 Query: 307 FIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLL 366 F + WN+D LL+ WKQG TGFP+IDAAMRQLNT GWMHNRLRM TASFL KD Sbjct: 295 FQEKYRTLSWNEDDELLEYWKQGQTGFPLIDAAMRQLNTTGWMHNRLRMATASFLTKDYR 354 Query: 367 VDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIR 426 +DWR GE YF +L+D D ASN GGWQWAAS G D+VPYFR+FNP Q KRFDP+GTFIR Sbjct: 355 IDWREGERYFAEKLIDYDEASNTGGWQWAASVGTDAVPYFRVFNPVRQSKRFDPEGTFIR 414 Query: 427 HWLPELNNVPTQYIHAPHSWLDKND------LSLNYPLPIVDHKKACHHTLNQYYAAKKQ 480 ++PEL +VP IH P + + +YPLP VDH +A + + Q Sbjct: 415 QYVPELKDVPASSIHEPAKLSEAKQKEYRVRIGTDYPLPTVDHSEARKAAITMFEGGTNQ 474 >gi|226315066|ref|YP_002774962.1| deoxyribodipyrimidine photolyase [Brevibacillus brevis NBRC 100599] gi|226098016|dbj|BAH46458.1| deoxyribodipyrimidine photolyase [Brevibacillus brevis NBRC 100599] Length = 484 Score = 301 bits (772), Expect = 1e-79, Method: Compositional matrix adjust. Identities = 180/493 (36%), Positives = 261/493 (52%), Gaps = 40/493 (8%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 +VW R DLR+ D+ AL+AA D +I V+I + ++ H ++++ + Sbjct: 4 IVWFRRDLRLHDHAALHAAMLTGDP-IIPVYIVEDSLCLSAAVGDKRLHAHFSAIAALDD 62 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL-QH 129 +L Q G + + + L + KLF+NR Y + +RD+L+ + L +H Sbjct: 63 ALVQLGGRLLIRR----GEPQQVLCQLAQETGAEKLFFNRDYTPDARKRDELVSEVLSRH 118 Query: 130 RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQ----------------AD 173 V + D VL PG I+ Y V+TP+R+ + Q L + + Sbjct: 119 GVFVHACKDLVLHEPGEIMTKQRTPYAVFTPYRR-VWQTLPKDRPFPQPTEWILFDRLKE 177 Query: 174 LRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQ 233 L S PVP + G N P ++ M GE+ A L++F +Y Y E+ Sbjct: 178 LPSEPVPTVEAFG----RNRPMGTEWE------MEQFGERAARKRLQQFLDRDIYTYKEK 227 Query: 234 RDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRH 293 RD+P + TS+LS L+ G LS R ++R++E + + ++L ELIWREFY+ Sbjct: 228 RDMPGVNATSRLSFALNAGTLSIRTVYHRVQEVLASARGEQVTSIEAFLTELIWREFYQQ 287 Query: 294 LMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRL 353 ++ F+P ++P E++ W L W QG TG+PI+DAAM+QLN GWMHNRL Sbjct: 288 VLYFHPHTT-NHAYLPQFEEVAWENKKDLFVRWCQGETGYPIVDAAMKQLNETGWMHNRL 346 Query: 354 RMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTI 413 RMITASFL KDLLVDWR G YF QL+D D A+N GGWQW+ASTG D+ PYFRIFNP Sbjct: 347 RMITASFLTKDLLVDWRWGMAYFAQQLIDFDEAANIGGWQWSASTGTDAQPYFRIFNPVT 406 Query: 414 QGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLD------KNDLSLNYPLPIVDHKKAC 467 QG++FD G F++ +LP L VP QYIH P + + +YPLP VDH + Sbjct: 407 QGEKFDRDGVFVKKYLPVLREVPLQYIHKPWDMPEHIQEQAGCKIGFDYPLPCVDHAQRR 466 Query: 468 HHTLNQYYAAKKQ 480 + + AK + Sbjct: 467 KLAMALFQEAKDR 479 >gi|169595566|ref|XP_001791207.1| hypothetical protein SNOG_00523 [Phaeosphaeria nodorum SN15] gi|111070898|gb|EAT92018.1| hypothetical protein SNOG_00523 [Phaeosphaeria nodorum SN15] Length = 632 Score = 300 bits (768), Expect = 3e-79, Method: Compositional matrix adjust. Identities = 175/492 (35%), Positives = 263/492 (53%), Gaps = 25/492 (5%) Query: 13 WLRNDLRITDNKALYAACHNSDAK---VIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69 W + DLRI DN L A + K +I V+I +P+ W H +S + F S+ ++ Sbjct: 141 WFKRDLRIRDNTGLSEAAALAKEKGIGLIGVWIMSPQDWVAHLVSPPKCDFELRSVELMK 200 Query: 70 KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD-KLLEKRLQ 128 K L + I + + L + V +F N +YE +E+RR+ +L+E L+ Sbjct: 201 KELDELDIPLHIETVPKRRNVAKRLLELAQEWNVKNIFCNLEYEPDELRREARLVELMLE 260 Query: 129 HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQAD--LRSLPVPAIRLTG 186 + + D ++PPG++ + Y VY+P+ ++ + +L L P+P L G Sbjct: 261 NGIGFNPQHDDCVVPPGALKTGGGKQYAVYSPWFRSWVAHLHAHPHLLNERPMPERNLAG 320 Query: 187 ------PVTPSNIP------RFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQR 234 + + IP D ++P GE A+ L +F EK+ Y R Sbjct: 321 FREKHAGLFDAKIPDLPESKSLTDEEKTRFHALWPAGEAAAIDRLERFASEKIGRYQATR 380 Query: 235 DIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKS-GAFSWLNELIWREFYRH 293 + PA+ T ++S + + G L+ R + + S G +W++E+ WR+FYRH Sbjct: 381 NFPALNSTGRVSAHHAAGTLAARTSVRMARSANTSKKLDGGSDGIKTWISEVAWRDFYRH 440 Query: 294 LMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRL 353 ++ +P VCM KPF IEW + AWK+G TG+PI+DAAMR L +MHNR Sbjct: 441 VLVHWPYVCMNKPFKFEYTNIEWEYNDAHFTAWKEGRTGYPIVDAAMRCLKHTAYMHNRN 500 Query: 354 RMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTI 413 RMITASFL K LL+DWR+GE+YFM+ L+DGD ASNNGGW ++ASTG D PYFRIFNP + Sbjct: 501 RMITASFLAKHLLLDWRLGEQYFMTHLIDGDFASNNGGWGFSASTGVDPQPYFRIFNPWL 560 Query: 414 QGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSL----NYPLPIVDHKKACHH 469 Q ++FD +G FIR W+ EL+ V + +H P++ DK + YP P+V+HK A Sbjct: 561 QSEKFDEEGDFIRLWVEELSGVQGKAVHNPYA--DKKAAEVARKNGYPKPVVEHKFARER 618 Query: 470 TLNQYYAAKKQS 481 L +Y A +S Sbjct: 619 CLARYKAGIGRS 630 >gi|145258924|ref|XP_001402217.1| deoxyribodipyrimidine photo-lyase [Aspergillus niger CBS 513.88] gi|134074832|emb|CAK38946.1| unnamed protein product [Aspergillus niger] Length = 584 Score = 300 bits (768), Expect = 4e-79, Method: Compositional matrix adjust. Identities = 174/490 (35%), Positives = 264/490 (53%), Gaps = 23/490 (4%) Query: 5 TAMSVHLVWLRNDLRITDNKAL---YAACHNSDAKVIAVFIATPEQWRQHGISARQSHFI 61 A VH W + DLR+ DN+ L Y ++ ++I +PE H SA + + Sbjct: 91 NAAVVH--WFKTDLRLHDNRGLQMAYQVAREHKLPLVGLYILSPEDLTAHLSSAPRVDLM 148 Query: 62 YASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD- 120 +L +++ LS+ I +D + + C + T LF N +YE++E+RR+ Sbjct: 149 LRTLELLRRDLSELDIPLYMETQEKRNDIPQRIIDLCQEWGATHLFANLEYEVDELRREA 208 Query: 121 KLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNL--------VQA 172 KL+ ++ + ++ D+ ++ PG +++ + Y VY+P+ +A L V Sbjct: 209 KLVRLCARNGIRFEAAHDTCVVTPGKLVSQQGKQYAVYSPWFRAWCAFLNENPEYLEVAD 268 Query: 173 DLRSLPVPAIR----LTG---PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKE 225 + S P A + L G PV P N R + ++P GE AL L F +E Sbjct: 269 EPGSNPGDARKHFKTLFGCEVPVAPEN-KRLSEEEKTRFRELYPEGEHEALRRLEAFLEE 327 Query: 226 KVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNEL 285 K Y + R+ A + TS LSPY + G LS R + +++ L + ++G SW++E+ Sbjct: 328 KANDYDDLRNTLAGRNTSVLSPYFASGSLSARTAVFQARKKNKGHLKRNQTGYTSWISEV 387 Query: 286 IWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNT 345 WR+FY+H++ +P +CM K F P + W+ + AW +G TG+PI+DAAMRQ+ Sbjct: 388 AWRDFYKHVLVHWPFICMNKCFKPEFTNLAWSYNKDHFNAWCEGKTGYPIVDAAMRQIKH 447 Query: 346 IGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPY 405 WMHNR RM+ +SFL KDLL+DWR GE YFM L+DGD ASN+GGW + +STG D PY Sbjct: 448 AAWMHNRTRMVVSSFLSKDLLIDWRRGERYFMENLIDGDFASNHGGWGFGSSTGVDPQPY 507 Query: 406 FRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLN-YPLPIVDHK 464 FRIFNP Q +RFDP+G +IR W+PEL + +H P+ + N YP PIVDH Sbjct: 508 FRIFNPLRQSERFDPEGEYIRLWVPELRAIEGAAVHDPYGRGAGDIAEKNGYPRPIVDHS 567 Query: 465 KACHHTLNQY 474 ++ L Y Sbjct: 568 ESRDRALENY 577 >gi|218437085|ref|YP_002375414.1| deoxyribodipyrimidine photo-lyase [Cyanothece sp. PCC 7424] gi|218169813|gb|ACK68546.1| Deoxyribodipyrimidine photo-lyase [Cyanothece sp. PCC 7424] Length = 475 Score = 300 bits (767), Expect = 4e-79, Method: Compositional matrix adjust. Identities = 184/483 (38%), Positives = 258/483 (53%), Gaps = 29/483 (6%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 L W R DLRI+DN L A S V+ +F P+ + ++ + ++ L ++Q+ Sbjct: 6 LFWHRRDLRISDNIGLSTARQRS-PHVVGIFCLDPDILEKDDVAPARVTYLIGCLQELQQ 64 Query: 71 SLSQKG---IVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127 + Q G ++ + E L + +F+N E RD+ + L Sbjct: 65 NYQQAGSQLLILKGKPSQAIPILAESL-------KAQAVFWNLDVEPYAQTRDEQVSNAL 117 Query: 128 QHRVIC-KSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNL----VQA--DLRSLPVP 180 Q + I + F D +L PG IL + + YKVYTPF + Q L VQA D++ L Sbjct: 118 QEKGIATEKFWDQLLHAPGKILTLSKEPYKVYTPFWRNWSQELKKSPVQALEDVQGLNQQ 177 Query: 181 AIRLTGPVTPSNIPRFFDYPFQAIDP-MFPIGEQNALHILRKFCKEKVYYYVEQRDIPAI 239 I L ++P D + +P M GE A L++FCK + Y EQRD+PAI Sbjct: 178 QISLAKEAGIIDLPTAKDLGYLWENPLMLNPGETAAKERLQEFCKTSINNYQEQRDLPAI 237 Query: 240 QGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKP-KSGAFSWLNELIWREFYRHLMAFY 298 GTS+LS L G + R W E + + + +W EL WREFY+H M F+ Sbjct: 238 DGTSRLSAALKFGAIGIRTVWQATLELYENSRSDEVRESIQTWQQELAWREFYQHCMYFF 297 Query: 299 PSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITA 358 P + G P+ + W+ D L QAW +G TG+PI+DAAMRQLN GWMHNR RMI A Sbjct: 298 PELADG-PYRKEFREFPWDNDEDLFQAWCEGKTGYPIVDAAMRQLNETGWMHNRCRMIVA 356 Query: 359 SFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRF 418 SFL KDL+++W+ GE+YFM +L DGDL++NNGGWQW+AS+G D P RIFNP Q +++ Sbjct: 357 SFLTKDLIINWQWGEKYFMQKLYDGDLSANNGGWQWSASSGMDPKP-LRIFNPASQSQKY 415 Query: 419 DPQGTFIRHWLPELNNVPTQYI---HAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYY 475 DP G +IR W+PEL ++ T+Y+ P S L + YP PIVDHKK +Y Sbjct: 416 DPDGEYIRQWIPELKSLDTEYLVTGKIPTSELRQ----CGYPEPIVDHKKRQAEFKQRYK 471 Query: 476 AAK 478 K Sbjct: 472 EVK 474 >gi|29654479|ref|NP_820171.1| deoxyribodipyrimidine photolyase [Coxiella burnetii RSA 493] gi|212212435|ref|YP_002303371.1| deoxyribodipyrimidine photolyase [Coxiella burnetii CbuG_Q212] gi|29541746|gb|AAO90685.1| deoxyribodipyrimidine photolyase [Coxiella burnetii RSA 493] gi|212010845|gb|ACJ18226.1| deoxyribodipyrimidine photolyase [Coxiella burnetii CbuG_Q212] Length = 472 Score = 300 bits (767), Expect = 4e-79, Method: Compositional matrix adjust. Identities = 186/477 (38%), Positives = 272/477 (57%), Gaps = 28/477 (5%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 + W R DLR++DN AL A ++D +I ++I +Q + G + R +++ SL +Q Sbjct: 4 IFWFRQDLRLSDNPALVEAAKSAD-HLIPLYILD-DQLKMLGDAQRW--WLHHSLSSLQT 59 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130 +LS+KG + +E + Y +V K+++NR YE D LE RL Sbjct: 60 ALSKKGTSLILKKGDTKRVLLELIKKY----KVEKIYWNRSYEPPYREIDTYLENRLP-P 114 Query: 131 VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVP-----AIRLT 185 + + + ++L P I N + YK++TPF K + +L + P AI+ Sbjct: 115 LSVEIYHSTLLTEPQKIKNKSGGYYKIFTPFWKHINASLQPRKTLAAPKKFSQHRAIKSD 174 Query: 186 GPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245 T + +P+ D+ Q D P GE+NA +L+KF KE + Y RD P I TS L Sbjct: 175 NLETWNLLPKHPDWS-QGFDQWKP-GEKNAQIVLKKFIKENLKNYPAHRDRPDISSTSHL 232 Query: 246 SPYLSIGVLSPRQCWNRLKEEFV-DLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304 SPYL G +S RQ W + + + D ++ + F L +LIWREF +L+ +P MG Sbjct: 233 SPYLHFGEISIRQVWTAITQATIQDKNLQKAADVF--LRQLIWREFAYYLLWHFPQ--MG 288 Query: 305 KP-FIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363 + F + +W K+ + L+AW++G TG+PI+DA MR+L G+MHNR+RMI ASFLVK Sbjct: 289 RSNFRNQFDNFKWKKNKNWLRAWQKGLTGYPIVDAGMRELWCTGYMHNRVRMIVASFLVK 348 Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423 DL++DWR GE++F + LLD DLA+N GWQW A G D+ PYFRIFNP +Q K+FDP GT Sbjct: 349 DLMIDWREGEKWFWNTLLDADLANNALGWQWIAGCGPDAAPYFRIFNPILQSKKFDPDGT 408 Query: 424 FIRHWLPELNNVPTQYIHAPHSWLD------KNDLSLNYPLPIVDHKKACHHTLNQY 474 +I+ W+PEL VP++YIH P D K +L ++YP PIV+H KA L Y Sbjct: 409 YIKRWIPELAKVPSKYIHYPADMPDNISESSKVNLGVDYPFPIVNHHKAKELALKAY 465 >gi|172058000|ref|YP_001814460.1| deoxyribodipyrimidine photo-lyase [Exiguobacterium sibiricum 255-15] gi|171990521|gb|ACB61443.1| Deoxyribodipyrimidine photo-lyase [Exiguobacterium sibiricum 255-15] Length = 451 Score = 299 bits (766), Expect = 6e-79, Method: Compositional matrix adjust. Identities = 184/473 (38%), Positives = 250/473 (52%), Gaps = 35/473 (7%) Query: 11 LVWLRNDLRITDNKALYAACH----NSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 + W+R+D R+ DN L A + A V VF P+ ++ ARQ +F + +L Sbjct: 4 ICWIRSDFRLEDNHMLARAVEYLEKDEQANVEFVFWVNPDYIGEY--DARQQYF-FQALE 60 Query: 67 QVQKSLSQKG--IVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLE 124 K+ I F Q +F ++ E D + F +R I + R DK E Sbjct: 61 HFAKNCKTHDMPIRFIEGQEKDFLEATEMADVLLFNAEYVEPFKSRDDGIMKKRGDKKTE 120 Query: 125 KRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL 184 + L D LL P ++ + YKV+TP++ A ++ V + PV L Sbjct: 121 RLL----------DRHLLHPHAVKKNDGSYYKVFTPYKNAFLKKDVD---KPYPVKLNLL 167 Query: 185 TGPVTP--SNIPRFFDY-PFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQG 241 N DY A D F +GE+ A LR F K + Y EQRD+PA+ G Sbjct: 168 KERYHKRRQNNAFMLDYFKRAASDTDFAVGEETARKRLRSFLKNNLSAYEEQRDLPAVDG 227 Query: 242 TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSV 301 TS +S YL G + R ++ +++E + G ++L ELIWREFY ++ YP Sbjct: 228 TSLMSRYLRTGEIGIRTIFDAVQQE------QDSKGKQTYLTELIWREFYYTILMHYPE- 280 Query: 302 CMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFL 361 P KIEW D +AW +G TG+PI+DAAMRQLNT GWMHNRLRMI ASFL Sbjct: 281 SKRLPVNEQYTKIEWETDEKGFKAWAEGKTGYPIVDAAMRQLNTTGWMHNRLRMIVASFL 340 Query: 362 VKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQ 421 KDLLVDW+ GE YF +L+D + ASN GGWQWAAS G D+VPYFR+FNPT Q K+FD Sbjct: 341 TKDLLVDWQKGERYFQQKLVDYEAASNIGGWQWAASVGTDAVPYFRVFNPTTQSKKFDKD 400 Query: 422 GTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQY 474 GTFIR +LPEL ++P IH P K+ +YP+PIV+H A + ++ Sbjct: 401 GTFIRTYLPELKDLPKTSIHEPTEQQRKD---YDYPMPIVEHDMARKRAIARF 450 >gi|156039880|ref|XP_001587047.1| hypothetical protein SS1G_12076 [Sclerotinia sclerotiorum 1980] gi|154696133|gb|EDN95871.1| hypothetical protein SS1G_12076 [Sclerotinia sclerotiorum 1980 UF-70] Length = 595 Score = 299 bits (765), Expect = 7e-79, Method: Compositional matrix adjust. Identities = 173/476 (36%), Positives = 256/476 (53%), Gaps = 27/476 (5%) Query: 13 WLRNDLRITDNKALYAACHNSDAK---VIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69 W + DLR DN AL+ A + K ++A++I +P+ + H + + FI +L ++ Sbjct: 114 WFKCDLRTRDNTALWMASEKAKEKGVPLVAMYIISPQDFEAHLTAPVRVDFILRTLEILK 173 Query: 70 KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQ-RVTKLFYNRQYEINEVRRDKLLEKRLQ 128 + L++ + Y + +E L + + L+ N +YE++E+RR+ + + Sbjct: 174 RDLAELDVPL-YVETVEKRKGVEGRILELLGEWGASHLYANMEYEVDELRREARMVRDCA 232 Query: 129 HRVICKS-FDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQ-ADLRSL-------PV 179 R I D+ ++ PG + + + Y VYTP+ KA I ++ + +DL L P Sbjct: 233 ERGIAMDVLHDTCVVRPGELRSGQGKQYSVYTPWFKAWIAHVHENSDLLDLFDAPGKNPA 292 Query: 180 PAIRLTGPVTPSNIP------RFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQ 233 A + + IP D + M+P GE A L KF EK+ Y E Sbjct: 293 SAREKFAKLFETKIPDAPANKSLTDEEKKRFHSMWPAGEHAAQERLSKFADEKINKYEEH 352 Query: 234 RDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKE-EFVDLLIKPKSGAFSWLNELIWREFYR 292 R+ P + TS LS + + G LS R ++ L G +W++E+ WR+FY+ Sbjct: 353 RNFPNLNSTSSLSVHFASGTLSARTAIRTARDHNNTKKLNAGYQGIQTWISEVAWRDFYK 412 Query: 293 HLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNR 352 H++ +P VCM KPF P I W ++ QAW +G TG+PI+DAAMRQL G+MHNR Sbjct: 413 HVLVHWPYVCMNKPFKPEYTNITWEYNNTHFQAWTEGKTGYPIVDAAMRQLKHCGYMHNR 472 Query: 353 LRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPT 412 RMI SFL K LL+DWR+GE +FM L+DGD ASNNGGW + ASTG D PYFRIFNP Sbjct: 473 CRMIVGSFLAKHLLIDWRMGERFFMEHLIDGDFASNNGGWGFCASTGVDPQPYFRIFNPL 532 Query: 413 IQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSL----NYPLPIVDHK 464 +Q ++FD +G FIR W+PEL +V ++IH P DK + YP IV+HK Sbjct: 533 LQSEKFDAEGEFIRKWVPELKSVKGKFIHEPFG--DKVAAGVARKNGYPERIVEHK 586 >gi|313201853|ref|YP_004040511.1| deoxyribodipyrimidine photo-lyase [Methylovorus sp. MP688] gi|312441169|gb|ADQ85275.1| Deoxyribodipyrimidine photo-lyase [Methylovorus sp. MP688] Length = 481 Score = 299 bits (765), Expect = 8e-79, Method: Compositional matrix adjust. Identities = 182/499 (36%), Positives = 266/499 (53%), Gaps = 43/499 (8%) Query: 5 TAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFI-------ATPEQWRQHGISARQ 57 T S LVW R DLR D+ ALY A + V F+ A P++ + R+ Sbjct: 2 TTSSYALVWFRRDLRDFDHAALYHAL-KAHTHVYCAFVFDTDILDALPDR------ADRR 54 Query: 58 SHFIYASLLQVQKSL-SQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINE 116 FI+ S+ ++Q++L SQ G + H C+ E + + ++ + + ++ NR YE + Sbjct: 55 VEFIWESVRELQQALRSQGGDLIMLHACAK-----EGIPALAVKLKASAVYSNRDYEPDA 109 Query: 117 VRRDKLLEKRL-QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLR 175 V RD + +L H + + D V+ +L A + Y V+TP++ A ++ L L+ Sbjct: 110 VARDAEVAAKLASHDIAFHQYKDQVIFEQDEVLTQAGKPYGVFTPYKNAHLKKLNDFYLQ 169 Query: 176 SLPVPAIRL-TGPVTPSNIPRFFDYPFQAI---DPMFPIGEQNALHILRKFCKEKVYYYV 231 + PV R + +P F + P G + +F +E++ Y Sbjct: 170 AYPVDRYRQHLAAADKTEMPTLESMGFARTNLGEMKLPTGMSGGQQLFAEF-QERMARYK 228 Query: 232 EQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFY 291 + RD PA++G S LS +L G +S R ++ +GA +WLNELIWR+FY Sbjct: 229 DARDFPAVKGPSYLSVHLRFGTVSIRHLARTAWQQH-------NAGAETWLNELIWRDFY 281 Query: 292 RHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHN 351 ++ +P V G+ F + I + L AW +G TG+P++DAAMRQLN G+MHN Sbjct: 282 FQVLHHHPQVAAGRAFKLEFDAIAFPNQQALFDAWCEGRTGYPLVDAAMRQLNQTGYMHN 341 Query: 352 RLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNP 411 RLRM+TASFLVKDLL+DWR GE YF +L+D DLA+NNGGWQWAASTG D+ P+FRIFNP Sbjct: 342 RLRMVTASFLVKDLLIDWRWGERYFAERLIDFDLAANNGGWQWAASTGCDAQPWFRIFNP 401 Query: 412 TIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSW----LDKNDLSL----NYPLPIVDH 463 Q ++FD QG FIR ++PEL + IHAP W L + L L +YP P+V+H Sbjct: 402 VTQSEKFDAQGKFIRKYVPELAACHEKEIHAP--WLMPPLRQQSLGLVIGKDYPAPVVEH 459 Query: 464 KKACHHTLNQYYAAKKQSL 482 L Y A +L Sbjct: 460 SVQREKALALYKNASSTAL 478 >gi|213648432|ref|ZP_03378485.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp. enterica serovar Typhi str. J185] Length = 202 Score = 299 bits (765), Expect = 9e-79, Method: Compositional matrix adjust. Identities = 132/201 (65%), Positives = 162/201 (80%) Query: 281 WLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAM 340 WLNELIWREFYRHLM +YP++C +PFI WT+++ W ++ H QAW++G TG+PI+DAAM Sbjct: 2 WLNELIWREFYRHLMTWYPALCKHQPFIRWTKRVAWQENPHYFQAWQKGETGYPIVDAAM 61 Query: 341 RQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGN 400 RQLN GWMHNRLRMITASFLVKDLL+DWR+GE YFMSQL+DGDLA+NNGGWQWAASTG Sbjct: 62 RQLNATGWMHNRLRMITASFLVKDLLIDWRLGERYFMSQLIDGDLAANNGGWQWAASTGT 121 Query: 401 DSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPI 460 D+ PYFRIFNPT Q +RFD G FIR WLP L ++P + IH P W +K + L+YP PI Sbjct: 122 DAAPYFRIFNPTTQRERFDRDGEFIRQWLPALRDIPGKAIHEPWRWAEKAGVVLDYPRPI 181 Query: 461 VDHKKACHHTLNQYYAAKKQS 481 V+HK+A TL+ Y AA+K + Sbjct: 182 VEHKQARIATLSAYEAARKGA 202 >gi|116871975|ref|YP_848756.1| deoxyribodipyrimidine photolyase [Listeria welshimeri serovar 6b str. SLCC5334] gi|116740853|emb|CAK19973.1| deoxyribodipyrimidine photolyase [Listeria welshimeri serovar 6b str. SLCC5334] Length = 470 Score = 298 bits (763), Expect = 1e-78, Method: Compositional matrix adjust. Identities = 179/485 (36%), Positives = 262/485 (54%), Gaps = 38/485 (7%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSH-FIYASLLQVQ 69 ++W R DLRI DNKALY A +D +I +F PEQ+ IS SH ++S+ + Sbjct: 4 VMWFRRDLRINDNKALYHASKEND--LILLFQVNPEQF----ISGSPSHQAFFSSVANFK 57 Query: 70 KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRV---TKLFYNRQYEINEVRRDKLLEKR 126 K + + H F + IE L L+ + K+F+N+ +RDK Sbjct: 58 KEIDKNA-----HLQIMFGEPIELLKR--LKDAIPAWDKVFFNQDETGYGAKRDKAARAF 110 Query: 127 LQHR-VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185 ++ + ++ D+ L + + + YK++TP+ K + + + +S+ P + Sbjct: 111 FEYNNITVHAYHDAYLHSAEEVKKTSTEYYKIFTPYYKKWREEIKETPFKSVLTPENIIK 170 Query: 186 GPVTPSNIPRFF----DYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQG 241 + P + +F D P +D + +GE+ A L+ F K + Y + RDIP Sbjct: 171 KELFPHDEEQFEKLIQDLP--ELD-LKVLGEEAANTRLKNFIKRDLAEYAKARDIPDSDQ 227 Query: 242 TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSV 301 TS LS YL G +S R W L++ KP G + EL WR+FY + +P+ Sbjct: 228 TSHLSRYLRTGEISIRTVWQALQQ------TKPTEGRAIFEKELCWRDFYNMIYVSFPN- 280 Query: 302 CMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFL 361 +P IEW + + W++G TG+P++DAAMRQL GWMHNRLRMITASFL Sbjct: 281 QKNEPIQENYRFIEWENNREFFKQWQEGKTGYPLVDAAMRQLKETGWMHNRLRMITASFL 340 Query: 362 VKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQ 421 KDLL+DWR GE+YF L+D D ASN GWQWAASTG D+VPYFRIFNPT Q ++FDP Sbjct: 341 TKDLLIDWRYGEKYFQQMLIDYDPASNISGWQWAASTGTDAVPYFRIFNPTTQSEKFDPS 400 Query: 422 GTFIRHWLPELNNVPTQYIHAPHSWLDKND------LSLNYPLPIVDHKKACHHTLNQYY 475 G FIR ++ EL+N+P ++IH P + L +YPLPIVDHK+ +++Y Sbjct: 401 GKFIRKYVEELSNLPDKFIHQPEKMSESQQKEHNLILGDDYPLPIVDHKERRKLAISRYE 460 Query: 476 AAKKQ 480 +K+Q Sbjct: 461 FSKEQ 465 >gi|153209159|ref|ZP_01947255.1| deoxyribodipyrimidine photolyase [Coxiella burnetii 'MSU Goat Q177'] gi|212218603|ref|YP_002305390.1| deoxyribodipyrimidine photolyase [Coxiella burnetii CbuK_Q154] gi|120575482|gb|EAX32106.1| deoxyribodipyrimidine photolyase [Coxiella burnetii 'MSU Goat Q177'] gi|212012865|gb|ACJ20245.1| deoxyribodipyrimidine photolyase [Coxiella burnetii CbuK_Q154] Length = 472 Score = 298 bits (762), Expect = 2e-78, Method: Compositional matrix adjust. Identities = 185/477 (38%), Positives = 268/477 (56%), Gaps = 28/477 (5%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 + W R DLR++DN AL A ++D +I ++I + + Q ++Y SL +Q Sbjct: 4 IFWFRQDLRLSDNPALVEAAKSAD-HLIPLYILDDQL---KMLVDAQRWWLYHSLSSLQT 59 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130 +LS+KG + +E + Y +V K+++NR YE D LE RL Sbjct: 60 ALSKKGTSLILKKGDTKRVLLELIKKY----KVEKIYWNRSYEPPYREIDTYLENRLPP- 114 Query: 131 VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVP-----AIRLT 185 + + + ++L P I N + YK++TPF K + +L + P AI+ Sbjct: 115 LSVEIYHSTLLTEPQKIKNKSGGYYKIFTPFWKHINASLQPRKTLAAPKKFSQHRAIKSD 174 Query: 186 GPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245 T + +P+ D+ Q D P GE+NA +L+KF KE + Y RD P I TS L Sbjct: 175 NLETWNLLPKHPDWS-QGFDQWKP-GEKNAQIVLKKFIKENLKNYPAHRDRPDISSTSHL 232 Query: 246 SPYLSIGVLSPRQCWNRLKEEFV-DLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304 SPYL G +S RQ W + + + D ++ + F L +LIWREF +L+ +P MG Sbjct: 233 SPYLHFGEISIRQVWTAITQATIQDKNLQKAADVF--LRQLIWREFAYYLLWHFPQ--MG 288 Query: 305 KP-FIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363 K F + +W K+ + L+AW++ TG+PI+DA MR+L G+MHNR+RMI ASFLVK Sbjct: 289 KSNFRNQFDNFKWKKNKNWLRAWQKWLTGYPIVDAGMRELWCTGYMHNRVRMIVASFLVK 348 Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423 DL++DWR GE++F + LLD DLA+N GWQW A G D+ PYFRIFNP +Q K+FDP GT Sbjct: 349 DLMIDWREGEKWFWNTLLDADLANNALGWQWIAGCGPDAAPYFRIFNPILQSKKFDPDGT 408 Query: 424 FIRHWLPELNNVPTQYIHAPHSWLD------KNDLSLNYPLPIVDHKKACHHTLNQY 474 +I+ W+PEL VP++YIH P D K +L ++YP PIV+H KA L Y Sbjct: 409 YIKRWIPELAKVPSKYIHYPADMPDNISESSKVNLGVDYPFPIVNHHKAKELALKAY 465 >gi|331222855|ref|XP_003324101.1| photolyase [Puccinia graminis f. sp. tritici CRL 75-36-700-3] gi|309303091|gb|EFP79682.1| photolyase [Puccinia graminis f. sp. tritici CRL 75-36-700-3] Length = 606 Score = 298 bits (762), Expect = 2e-78, Method: Compositional matrix adjust. Identities = 194/536 (36%), Positives = 280/536 (52%), Gaps = 75/536 (13%) Query: 6 AMSVHLVWLR-NDLRITDNKALYAACH---NSDAKVIAVFIATPEQWRQHGISARQSHFI 61 A V + W+R DLR++DN+AL A + ++ + + +P +R H S R+ F+ Sbjct: 72 AEGVVVWWMRMRDLRLSDNRALAVASQLAKDQAKHLVVLHVLSPGDYRSHDRSPRRIDFV 131 Query: 62 YASLLQVQKSLSQKGI------VFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEIN 115 +L +Q L + I V HQ + I+ + S+ + L N ++E++ Sbjct: 132 LRNLSDLQARLHKLNIPLWTITVEPRHQIP--EKIIQLVSSWG----ASYLTANIEHEVD 185 Query: 116 EVRRD-KLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADL 174 E+RRD ++L + + D+ L+ PG +L + Y V+ P+++ NL+ ++L Sbjct: 186 ELRRDIQVLNLAREKNIGVDFLHDTCLVEPGKVLTKENKPYSVFGPWQRNWA-NLINSNL 244 Query: 175 RSLPVPAIRLTGPVTPSN-----IPRFFDYPFQAIDPMFPI--------------GEQNA 215 + A P PS + + F+ P A P F + GEQ A Sbjct: 245 DEY-IAAAEDCHPNDPSIKDVEILNQLFECPVPASLPGFELSAEDSKIMHENWKAGEQAA 303 Query: 216 LHILRKF------------------------CKEKVYYYVEQ----RDIPAIQGTSQLSP 247 +L +F + VEQ R+ P + GTS+LS Sbjct: 304 EELLNQFLNSPLKSQSTRQTTLTKDGKTSGATTRRAETIVEQYSSLRNRPDLPGTSRLSA 363 Query: 248 YLSIGVLSPRQCWN---RLKEEF---VDLLIKPKS--GAFSWLNELIWREFYRHLMAFYP 299 YL+ GV+SPR C R+ E+ VD L + G W +EL WR+FY+H++A +P Sbjct: 364 YLAAGVISPRACIRASFRISEKGKKPVDGLQVDRRDLGVGVWQSELGWRDFYQHVLAAWP 423 Query: 300 SVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITAS 359 VCM KPF E + W +D LL+ WKQG TG+P IDA MRQL IG+MHNR RM A Sbjct: 424 RVCMRKPFNLKYESLVWEEDEGLLEKWKQGLTGYPFIDACMRQLKHIGYMHNRGRMCVAM 483 Query: 360 FLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFD 419 FL KDL++DW++GE++FM L+DGDL SNNGGWQW+ASTG D+ PYFRIF P Q ++ D Sbjct: 484 FLTKDLMMDWKLGEKWFMENLVDGDLGSNNGGWQWSASTGTDAQPYFRIFAPLSQSEKSD 543 Query: 420 PQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDL-SLNYPLPIVDHKKACHHTLNQY 474 P G FIRHW+PEL ++ + IHAP L + LNYP PIVDH A L +Y Sbjct: 544 PNGDFIRHWVPELKSITGKNIHAPFDSLPPDKFKKLNYPKPIVDHSVARKRALARY 599 >gi|237654350|ref|YP_002890664.1| deoxyribodipyrimidine photo-lyase [Thauera sp. MZ1T] gi|237625597|gb|ACR02287.1| Deoxyribodipyrimidine photo-lyase [Thauera sp. MZ1T] Length = 484 Score = 297 bits (761), Expect = 2e-78, Method: Compositional matrix adjust. Identities = 182/499 (36%), Positives = 260/499 (52%), Gaps = 42/499 (8%) Query: 7 MSVHLVWLRNDLRITDNKALYAA------CHNSDAKVIAVFIATPEQWRQHGISARQSHF 60 MS LVW R DLR D+ AL+ A H + A+ A P + + R+ F Sbjct: 1 MSSALVWFRRDLRSFDHAALHHALRFAERVHCAFVFDTAILDALPAR------ADRRVEF 54 Query: 61 IYASLLQVQKSLSQKGIVFQYH------QCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEI 114 I+ASL ++ +L + +D I L + V K+F NR YE Sbjct: 55 IHASLAELDAALDAMARAAGGTGGGLIVRHGRAEDEIPRL---AAELGVDKVFANRDYEP 111 Query: 115 NEVRRDKLLEKRLQHRVIC-KSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQAD 173 + + RD + +RL I + F D V+ +L + Y V+TP++ A ++ + + Sbjct: 112 DAILRDSRVAQRLAEDGIGYEDFKDQVVFERDEVLTQTGKPYSVFTPYKNAWLKAVDDSQ 171 Query: 174 LRSLPVP--AIRLTGPVTPSNIPRFFDYPFQAIDPM---FPIGEQNALHILRKFCKEKVY 228 + S V A L +P D F + P+G + F ++ Sbjct: 172 VSSHAVEKYAAHLAPKPAGETLPGLADIGFAPTNLAELNMPVGMSGGKRLFDDFAA-RIE 230 Query: 229 YYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWR 288 Y RD PA++G S LS +L G +S RQ + + GA +WL+ELIWR Sbjct: 231 RYKRARDFPAVKGVSYLSTHLRFGTVSIRQLAAHAR-------ARGGEGAETWLSELIWR 283 Query: 289 EFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGW 348 +FY ++ +P V + + F P + ++W+ L AW + TG+PI+DAAMRQL+ GW Sbjct: 284 DFYHQILWHHPQV-VDRAFRPEYDAVQWDDAPELFAAWCEARTGYPIVDAAMRQLDQTGW 342 Query: 349 MHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRI 408 MHNRLRMI ASFL KDL VDWR+GE YF +L D DLA+NNGGWQWAASTG D+ P+FRI Sbjct: 343 MHNRLRMIVASFLTKDLGVDWRLGERYFAIRLNDYDLAANNGGWQWAASTGCDAQPWFRI 402 Query: 409 FNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAP--HSWLD----KNDLSLNYPLPIVD 462 FNP Q ++FDP+G FIR +LPEL VP ++IHAP +D + + ++YP PIVD Sbjct: 403 FNPVTQSEKFDPEGRFIRRYLPELARVPDKFIHAPWTMGGIDQTACRTKIGVDYPGPIVD 462 Query: 463 HKKACHHTLNQYYAAKKQS 481 H A TL ++ K + Sbjct: 463 HAAARERTLQRFGVVKNDA 481 >gi|327193153|gb|EGE60063.1| deoxyribodipyrimidine photo-lyase protein [Rhizobium etli CNPAF512] Length = 482 Score = 297 bits (760), Expect = 3e-78, Method: Compositional matrix adjust. Identities = 179/491 (36%), Positives = 265/491 (53%), Gaps = 28/491 (5%) Query: 3 ATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIY 62 A A ++W R DLR+ DNKAL AA H S +I+++I PE + A Q+ +++ Sbjct: 2 AKDAAKPVILWFRKDLRLDDNKALNAA-HFSGRPIISLYIREPEAAGTGPLGAAQAWWLH 60 Query: 63 ASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKL 122 SL + SL ++ +++E L S Q +F+NR+Y+ + D Sbjct: 61 HSLEALDGSLRKRRGGLSLASG----EALEVLRSLIKQSDADAVFWNRRYDPPGISIDAR 116 Query: 123 LEKRLQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVP- 180 +E L+ R I KSF +L P ++ + Y+VYTPF +AL ++ ++A+ +P Sbjct: 117 IEHELEKRAIEVKSFGGQLLHEPSQLMTGSGTPYRVYTPFWRAL-ESSIEAEPLDIPSKL 175 Query: 181 --AIRLTGPVTPSNIPRFFDYPFQAID--PMFPIGEQNALHILRKFCKEKVYYYVEQRDI 236 A +L G + P A + + GE+ A LR F ++++ Y E RD Sbjct: 176 QLASKLPGSEKLESWKLLSTQPDWASNFADLCTPGEEGAQEKLRTFIEDRLDGYKENRDY 235 Query: 237 PAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMA 296 PA TS LSP+L++G +SP + W+ + + P + + E+ WREF HL+A Sbjct: 236 PAKPATSMLSPHLALGEISPARIWDATRGLSKHV---PAADIVHFRKEIAWREFSYHLLA 292 Query: 297 FYPSVCMGKPFIPWTEKI---EWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRL 353 +P + W ++ EW + +AW +G TG+PI+DA MRQL GWMHNR+ Sbjct: 293 HFPRLATAN----WDDRFDGFEWRRAEKDFKAWSRGMTGYPIVDAGMRQLWRYGWMHNRV 348 Query: 354 RMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTI 413 RMI ASFL+KDL+VDWR GE +F L+D D A+N WQW A +G D+ P+FRIFNP + Sbjct: 349 RMIAASFLIKDLMVDWRHGEAWFRDTLVDADPANNAASWQWVAGSGADASPFFRIFNPVL 408 Query: 414 QGKRFDPQGTFIRHWLPELNNVPTQYIH----APHSWLDKNDLSLN--YPLPIVDHKKAC 467 QG++FDP G F+R +PEL + +YIH AP S LD D+ L YP P+VDH A Sbjct: 409 QGEKFDPDGDFVRAHVPELRKLDAKYIHRPFEAPKSVLDAADVILGETYPEPVVDHAGAR 468 Query: 468 HHTLNQYYAAK 478 L Y A + Sbjct: 469 KRALAAYNAIR 479 >gi|254497872|ref|ZP_05110637.1| deoxyribodipyrimidine photolyase [Legionella drancourtii LLAP12] gi|254352870|gb|EET11640.1| deoxyribodipyrimidine photolyase [Legionella drancourtii LLAP12] Length = 477 Score = 296 bits (759), Expect = 3e-78, Method: Compositional matrix adjust. Identities = 177/488 (36%), Positives = 266/488 (54%), Gaps = 35/488 (7%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 MS +VW R DLR DN+AL AC N +I ++I + Q + A Q +++ SLL Sbjct: 1 MSTAIVWFRQDLRCNDNQALAEAC-NHHQYIIPLYIYS-----QESLGAAQHWWLHHSLL 54 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 +QK L ++G+ C ++ + ++ +++NR YE ++RDK ++ Sbjct: 55 ALQKELKKQGLDL----CLKQGQALSIIHELIKNHKIEAVYWNRCYEPKSIQRDKQIKDE 110 Query: 127 LQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185 L+ + + SF+ S+L P ++ N +KV+TP+ K I+ Q+ + S I Sbjct: 111 LRLKGLQVYSFNGSLLNEPWTVKNKNGDYFKVFTPYWKQCIRQTTQSRVSS-----INQR 165 Query: 186 GPVTPSNIPRFFDYPFQAIDPMFPI--------GEQNALHILRKFCKEKVYYYVEQRDIP 237 P S + D+ P + I GE A++ L F + + Y E R+ P Sbjct: 166 PPPLTSTSEQLSDWRLLPQKPNWAIEFPNYWEPGEHGAMNKLNFFIEHHLQDYQEARNHP 225 Query: 238 AIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKS---GAFSWLNELIWREFYRHL 294 + TS+L+P+L G +SP Q WN ++E ++PK A +L EL WREF +L Sbjct: 226 SKTATSRLAPHLHFGEISPWQVWNAIEEA----KLQPKCDLRSADHFLAELGWREFSYYL 281 Query: 295 MAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLR 354 + +P + K F + W +D L+ W+ G TGFPI+DA MR+L G+MHNR+R Sbjct: 282 LYHFPELP-NKNFRQEFDAFPWQQDETHLKCWQTGMTGFPIVDAGMRELWHTGYMHNRVR 340 Query: 355 MITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQ 414 MI ASFL+KDL++DWR G +F + LLD DLA+N+ WQW A TG DS PYFRIFNPT+Q Sbjct: 341 MIVASFLIKDLMIDWRAGAAWFYNTLLDADLANNSASWQWVAGTGADSAPYFRIFNPTLQ 400 Query: 415 GKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKN---DLSLNYPLPIVDHKKACHHTL 471 ++FDPQG +I+ W+PEL+ VP Q+IH P + L +YP P+VDH L Sbjct: 401 SEKFDPQGEYIKMWIPELSQVPRQWIHKPWEAPPQTLAITLGKDYPYPLVDHALVRKIAL 460 Query: 472 NQYYAAKK 479 Y + +K Sbjct: 461 QHYQSLRK 468 >gi|226941562|ref|YP_002796636.1| PhrB [Laribacter hongkongensis HLHK9] gi|226716489|gb|ACO75627.1| PhrB [Laribacter hongkongensis HLHK9] Length = 469 Score = 296 bits (759), Expect = 3e-78, Method: Compositional matrix adjust. Identities = 182/476 (38%), Positives = 251/476 (52%), Gaps = 29/476 (6%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 L WLR DLR+ D+ AL +A S +V+ VF+ S R+ FI+ SL ++Q Sbjct: 7 LCWLRRDLRLDDHAALSSALQQSR-EVVCVFVFDRAILDSLPASDRRVDFIHRSLCELQA 65 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL-QH 129 L Q G + + E L + + +F + E V RD + +L Q Sbjct: 66 RLQQHGSTL----VCRYGWADEALPALAAELGAQVVFAAQDDEPASVTRDARVAGQLEQA 121 Query: 130 RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPV-PAIRLTGPV 188 I D L +L + V+TP+ +A + L AD+ PV P + P+ Sbjct: 122 GCILHLVKDHTLRARDELLTRTGTPFTVFTPYARAWLARLAPADMAEWPVAPYLDRLCPL 181 Query: 189 TPSNIPR-----FFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS 243 +P F D A+ + G A L +F ++ Y E+RD PA+ TS Sbjct: 182 PAQPLPSLASMGFTDTGLAALG--WQAGSTGAQAALAQFLP-RLPLYHEERDFPALDATS 238 Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCM 303 +LSP+L G LS RQ RL + GA +WLNEL+WR+FY ++ P + Sbjct: 239 RLSPHLRFGTLSVRQL-VRLATD------AGHEGAQAWLNELVWRDFYHQVLWHRPQLAQ 291 Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363 G F P ++++W ++ AW +G TG+P++DAAMRQL GWMHNRLRMI ASFL K Sbjct: 292 GHAFKPVYDQLDWPGEADHFAAWTEGRTGYPLVDAAMRQLRQTGWMHNRLRMICASFLAK 351 Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423 DLL+DWR+GE +F LLD D A+NNGGWQWAASTG D+ PYFRIFNP Q ++FDP G Sbjct: 352 DLLLDWRLGEAWFAECLLDFDFAANNGGWQWAASTGCDAQPYFRIFNPVSQSRKFDPDGH 411 Query: 424 FIRHWLPELNNVPTQYIHAPHSWLDKN-----DLSLNYPLPIVDHKKACHHTLNQY 474 FIRH++PEL + + IHAP WL + +YPLP+VDH + L Y Sbjct: 412 FIRHFVPELARLDAEAIHAP--WLARRLPPGFSPGHDYPLPLVDHARQRERALALY 465 >gi|313610351|gb|EFR85579.1| deoxyribodipyrimidine photo-lyase [Listeria monocytogenes FSL F2-208] Length = 467 Score = 296 bits (759), Expect = 4e-78, Method: Compositional matrix adjust. Identities = 176/485 (36%), Positives = 250/485 (51%), Gaps = 39/485 (8%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSH-FIYASLLQVQ 69 ++W R DLR+ DNKALY AC D ++ +F P Q+ I+ SH + S+ + Sbjct: 4 VMWFRRDLRVNDNKALYNACKEDD--LLLLFQVNPAQF----ITGSPSHQAFFTSVAHFK 57 Query: 70 KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVT------KLFYNRQYEINEVRRDKLL 123 + + + H F + IE C QQ K+++NR RD+ Sbjct: 58 QEIDKTA-----HLQIMFGEPIE-----CFQQLKDTLPSWDKVYFNRDETGYGAERDEAA 107 Query: 124 EKRL-QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAI 182 + + ++ +SF DS L + + YK++TP+ K + + + + P Sbjct: 108 QAFFDEQKIEVQSFHDSYLHSAEEVKKSPTEYYKIFTPYYKKWREEIKETPFKVTLKPEN 167 Query: 183 RLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGT 242 + P +F + P+ GE+ A L F K + Y + RD P + T Sbjct: 168 IRKESLFPKYEEQFAEMTCDL--PILDSGERAANTRLANFIKHDIADYDKARDFPELDKT 225 Query: 243 SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVC 302 S LS YL G +S R W L+E + G ++ EL WR+FY + +P+ Sbjct: 226 SHLSRYLRTGEISIRTIWQALQE------TEATEGRATFEKELCWRDFYNMIYVSFPNQ- 278 Query: 303 MGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLV 362 +P IEW + +AW++G TGFP++DAAMRQL GWMHNRLRMITASFL Sbjct: 279 KNEPIQENYRFIEWENNREFFKAWQEGETGFPLVDAAMRQLKETGWMHNRLRMITASFLT 338 Query: 363 KDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQG 422 KDLL+DWR GE+YF L+D D ASN GGWQWAASTG D+VPYFRIFNPT Q ++FDP G Sbjct: 339 KDLLIDWRFGEKYFQQMLIDYDPASNIGGWQWAASTGTDAVPYFRIFNPTTQSQKFDPTG 398 Query: 423 TFIRHWLPELNNVPTQYIHAPHSWLDKND------LSLNYPLPIVDHKKACHHTLNQYYA 476 FIR ++ EL N+P +YIH P + L +YP PIVDHK+ + +Y Sbjct: 399 EFIRKYVKELANLPDKYIHQPEKMTETEQKEHGLLLGKDYPFPIVDHKERRKLAIARYEF 458 Query: 477 AKKQS 481 +K+ S Sbjct: 459 SKEHS 463 >gi|253999882|ref|YP_003051945.1| Deoxyribodipyrimidine photo-lyase [Methylovorus sp. SIP3-4] gi|253986561|gb|ACT51418.1| Deoxyribodipyrimidine photo-lyase [Methylovorus sp. SIP3-4] Length = 481 Score = 296 bits (759), Expect = 4e-78, Method: Compositional matrix adjust. Identities = 181/491 (36%), Positives = 263/491 (53%), Gaps = 43/491 (8%) Query: 5 TAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFI-------ATPEQWRQHGISARQ 57 T S LVW R DLR D+ ALY A + V F+ A P++ + R+ Sbjct: 2 TTSSYALVWFRRDLRDFDHAALYHAL-KAHTHVYCAFVFDTDILDALPDR------ADRR 54 Query: 58 SHFIYASLLQVQKSL-SQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINE 116 FI+ S+ ++Q++L SQ G + H C+ E + + ++ + ++ NR YE + Sbjct: 55 VEFIWESVRELQQALRSQGGDLIVLHACAK-----EAIPALAVKLKANAVYSNRDYEPDA 109 Query: 117 VRRD-KLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLR 175 V RD K+ K H + + D V+ +L A + Y V+TP++ A ++ L L+ Sbjct: 110 VARDAKVAAKLASHDIAFHQYKDQVIFEQDEVLTQAGKPYGVFTPYKNAHLKKLNDFYLQ 169 Query: 176 SLPVPAIRL-TGPVTPSNIPRFFDYPFQAI---DPMFPIGEQNALHILRKFCKEKVYYYV 231 + PV R + +P F + P G + +F +E++ Y Sbjct: 170 AYPVDRYRQHLAASDKTEMPTLESMGFARTNLAEMKLPTGMSGGQQLFAEF-QERMARYK 228 Query: 232 EQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFY 291 + RD PA++G S LS +L G +S R ++ +GA +WLNELIWR+FY Sbjct: 229 DARDFPAVKGPSYLSVHLRFGTVSIRHLARTAWQQH-------NAGAETWLNELIWRDFY 281 Query: 292 RHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHN 351 ++ +P V G+ F + I + L AW +G TG+P++DAAMRQLN G+MHN Sbjct: 282 FQVLHHHPQVAAGRAFKLEFDAIAFPNQQALFDAWCEGRTGYPLVDAAMRQLNQTGYMHN 341 Query: 352 RLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNP 411 RLRM+TASFLVKDLL+DWR GE YF +L+D DLA+NNGGWQWAASTG D+ P+FRIFNP Sbjct: 342 RLRMVTASFLVKDLLIDWRWGERYFAERLIDFDLAANNGGWQWAASTGCDAQPWFRIFNP 401 Query: 412 TIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSW----LDKNDLSL----NYPLPIVDH 463 Q ++FD QG FIR ++PEL + IHAP W L + L L +YP P+V+H Sbjct: 402 VTQSEKFDAQGKFIRKYVPELAACHEKEIHAP--WLMPPLRQQSLGLVIGKDYPAPVVEH 459 Query: 464 KKACHHTLNQY 474 L+ Y Sbjct: 460 SVQREKALSLY 470 >gi|315281208|ref|ZP_07869885.1| deoxyribodipyrimidine photo-lyase [Listeria marthii FSL S4-120] gi|313615150|gb|EFR88618.1| deoxyribodipyrimidine photo-lyase [Listeria marthii FSL S4-120] Length = 467 Score = 296 bits (759), Expect = 4e-78, Method: Compositional matrix adjust. Identities = 186/491 (37%), Positives = 258/491 (52%), Gaps = 55/491 (11%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSH-FIYASLLQVQ 69 ++W R DLR++DNKALY A D +I +F P Q+ I+ SH +AS+ Q Sbjct: 4 VMWFRRDLRVSDNKALYHASKEDD--LILLFQVNPAQF----ITGSPSHQAFFASVAHFQ 57 Query: 70 KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRV------TKLFYNRQYEINEVRRDKLL 123 + L++ + F D +E CLQQ K+F+NR RD Sbjct: 58 QELAKTARL-----QIMFGDPME-----CLQQLKEAVPTWNKVFFNRDETGYGASRDAAA 107 Query: 124 EKRLQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAI 182 ++ R I +F DS L + + YK++TP+ K + +++ +P Sbjct: 108 QQFFDERQIEVHAFHDSYLHSAEEVKKSPTEYYKIFTPYYKKW-----REEMKEMP---- 158 Query: 183 RLTGPVTPSNIPRFFDYP-----FQAIDPMFPI---GEQNALHILRKFCKEKVYYYVEQR 234 L + P NI + +P F I P+ GEQ A L F KE + Y + R Sbjct: 159 -LKVTLKPENIRKESLFPKYEEQFAEIVHDLPVSDAGEQAANARLASFIKEDLTDYDKAR 217 Query: 235 DIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHL 294 D P + TS LS YL G +S R W L++ + G ++ EL WR+FY + Sbjct: 218 DFPELDKTSHLSRYLRTGEISIRTIWQALQQ------TEATEGRATFEKELCWRDFYNMI 271 Query: 295 MAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLR 354 +P +P IEW + W++G TGFP++DAAMRQL GWMHNRLR Sbjct: 272 YVSFPD-QKNEPIQENYRYIEWENSRAFFKCWQEGQTGFPLVDAAMRQLKETGWMHNRLR 330 Query: 355 MITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQ 414 MITASFL KDLL+DWR GE+YF L+D D ASN GGWQWAASTG D+VPYFRIFNPT Q Sbjct: 331 MITASFLTKDLLIDWRFGEKYFQQMLIDYDPASNIGGWQWAASTGTDAVPYFRIFNPTTQ 390 Query: 415 GKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDK--NDLSL----NYPLPIVDHKKACH 468 ++FDP G FIR ++ EL ++P ++IH P +K N+ L +YPLPIVDHK+ Sbjct: 391 SEKFDPAGKFIRKYVKELAHIPDKFIHQPEKMSEKEQNEYGLLVGKDYPLPIVDHKERRK 450 Query: 469 HTLNQYYAAKK 479 + +Y +K+ Sbjct: 451 LAIARYEFSKE 461 >gi|254991721|ref|ZP_05273911.1| DNA photolyase [Listeria monocytogenes FSL J2-064] Length = 467 Score = 296 bits (758), Expect = 5e-78, Method: Compositional matrix adjust. Identities = 179/490 (36%), Positives = 253/490 (51%), Gaps = 49/490 (10%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSH-FIYASLLQVQ 69 ++W R DLR+ DNKALY AC D ++ +F P Q+ I+ SH +AS+ + Sbjct: 4 VMWFRRDLRVNDNKALYHACKEDD--LLLLFQVNPAQF----ITGSPSHQAFFASVAHFK 57 Query: 70 KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVT------KLFYNRQYEINEVRRDKLL 123 + + + H F + IE C QQ K+++NR RD+ Sbjct: 58 QEIDKTA-----HLQIMFGEPIE-----CFQQLKDTLPSWDKVYFNRDETGYGAERDEAA 107 Query: 124 EKRL-QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAI 182 + + ++ ++F DS L + + YK++TP+ K + +++ P Sbjct: 108 QAFFDEQKIEVQAFHDSYLHSAEEVKKSPTEYYKIFTPYYKKW-----REEIKETPFKVT 162 Query: 183 RLTGPVTPSNIPRFFDYPFQAID-----PMFPIGEQNALHILRKFCKEKVYYYVEQRDIP 237 + ++ F Y Q + P+ IGE+ A L F K V Y + RD P Sbjct: 163 LKHENIRKESL--FLKYEEQFAEMTSDLPILDIGERAANTRLANFIKHDVADYDKARDFP 220 Query: 238 AIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAF 297 + TS LS YL G +S R W L+E + G ++ EL WR+FY + Sbjct: 221 ELDKTSHLSRYLRTGEISIRTIWQSLQE------TEATEGRATFEKELCWRDFYNMIYVS 274 Query: 298 YPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMIT 357 +P+ +P IEW + +AW++G TGFP++DAAMRQL GWMHNRLRMIT Sbjct: 275 FPN-QKNEPIQENYRFIEWENNREFFKAWQEGKTGFPLVDAAMRQLKETGWMHNRLRMIT 333 Query: 358 ASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKR 417 ASFL KDLL+DWR GE+YF L+D D ASN GGWQWAASTG DSVPYFRIFNPT Q ++ Sbjct: 334 ASFLTKDLLIDWRFGEKYFQQMLIDYDPASNIGGWQWAASTGTDSVPYFRIFNPTTQSQK 393 Query: 418 FDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND------LSLNYPLPIVDHKKACHHTL 471 FD G FIR ++ EL N+P +YIH P + L +YP PIVDHK+ + Sbjct: 394 FDSTGKFIRKYVKELANLPDKYIHQPEKMSETEQKEHGLLLGKDYPFPIVDHKERRKLAI 453 Query: 472 NQYYAAKKQS 481 +Y +K+ S Sbjct: 454 ARYEFSKEHS 463 >gi|217965318|ref|YP_002350996.1| deoxyribodipyrimidine photolyase [Listeria monocytogenes HCC23] gi|217334588|gb|ACK40382.1| deoxyribodipyrimidine photolyase [Listeria monocytogenes HCC23] gi|307570126|emb|CAR83305.1| phr [Listeria monocytogenes L99] Length = 467 Score = 296 bits (758), Expect = 5e-78, Method: Compositional matrix adjust. Identities = 175/485 (36%), Positives = 251/485 (51%), Gaps = 39/485 (8%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSH-FIYASLLQVQ 69 ++W R DLR+ DNKALY AC D ++ +F P Q+ I+ SH +AS+ + Sbjct: 4 VMWFRRDLRVNDNKALYHACKEDD--LLLLFQVNPAQF----ITGSPSHQAFFASVAHFK 57 Query: 70 KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVT------KLFYNRQYEINEVRRDKLL 123 + + + H F + IE C QQ K+++NR +RD+ Sbjct: 58 QEIDKTA-----HVQIMFGEPIE-----CFQQLKDTLPSWDKVYFNRDETGYGAKRDEAA 107 Query: 124 EKRL-QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAI 182 + + ++ +SF DS L + + YK++TP+ K + + + + P Sbjct: 108 QAFFDEQKIEVQSFHDSYLHSAEEVKKSPTEYYKIFTPYYKKWREEIKETPFKVTLKPEN 167 Query: 183 RLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGT 242 + P +F + P+ GE+ A L F K + Y + RD P + T Sbjct: 168 IRKESLFPKYEEQFAEMTCDL--PILDSGERAANTRLANFIKHDIADYDKARDFPELDKT 225 Query: 243 SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVC 302 S LS YL G +S R W L+E K G ++ EL WR+FY + +P+ Sbjct: 226 SHLSRYLRTGEISIRTVWQALQE------TKATEGRATFEKELCWRDFYNMIYVSFPNQ- 278 Query: 303 MGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLV 362 +P IEW + +AW++G TGFP++DAAMRQL GWMHNRLRMITASFL Sbjct: 279 KNEPIQENYRFIEWENNREFFKAWQEGKTGFPLVDAAMRQLKETGWMHNRLRMITASFLT 338 Query: 363 KDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQG 422 KDLL+DWR GE+YF L+D D ASN GGWQWAASTG D+VPYFRIFNPT Q ++FDP Sbjct: 339 KDLLIDWRFGEKYFQQMLIDYDPASNIGGWQWAASTGTDAVPYFRIFNPTTQSQKFDPTA 398 Query: 423 TFIRHWLPELNNVPTQYIHAPHSWLDKND------LSLNYPLPIVDHKKACHHTLNQYYA 476 FIR ++ EL N+P +YIH P + L +YP P++DHK+ + +Y Sbjct: 399 KFIRKYVKELANLPDKYIHQPEKMSETEQKEYGLVLGKDYPFPLIDHKERRKLAIARYEF 458 Query: 477 AKKQS 481 +K+ S Sbjct: 459 SKEHS 463 >gi|145588429|ref|YP_001155026.1| deoxyribodipyrimidine photo-lyase [Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1] gi|145046835|gb|ABP33462.1| deoxyribodipyrimidine photo-lyase type I [Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1] Length = 492 Score = 296 bits (758), Expect = 5e-78, Method: Compositional matrix adjust. Identities = 187/498 (37%), Positives = 262/498 (52%), Gaps = 35/498 (7%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWR---------QHGISARQ 57 M LVWLR DLR+ DN AL+ A S +V FI E + Q R+ Sbjct: 1 MQKGLVWLRRDLRLYDNAALHYALKES-KQVWVTFIFDEEILKPLLKGELDAQRLKHDRR 59 Query: 58 SHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEV 117 FI+ L Q+ + L ++G F +E + V +F N YE + + Sbjct: 60 VDFIWQGLEQIDEELRKQGGGL----IVRFGKPVECIPQIAKDLGVDTVFTNHDYEPSAI 115 Query: 118 RRDKLLEKRLQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRS 176 RD+ ++ L I +SF D V+ IL ++ ++ ++TP++ ++ L + DL + Sbjct: 116 ARDEAVKTLLAKSDIQFESFKDQVIFEKKEILTNSNTVFSIFTPYKNNWLKTLQEKDLVA 175 Query: 177 LPVPAIRLTGPVTPS----NIPRFFDYPF--QAIDPMFPIGEQNALHILRKFCKEKVYYY 230 A P IP F I+ P G + L F ++ Y Sbjct: 176 YECSAKPGQFAAIPKKLAQEIPTLESMGFCKTGIEAYLPPGAEGGQAFLEDFLP-RIDQY 234 Query: 231 VEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREF 290 RD PAI+G S LS +L G+LS R L E ++ GA WL+ELIWR+F Sbjct: 235 QVGRDFPAIKGVSYLSTHLRFGMLSIRG----LVREAHRRMLAGSMGATIWLSELIWRDF 290 Query: 291 YRHLMAFYPSVCMGKPFIPWTEKIEWNKDS---HLLQAWKQGYTGFPIIDAAMRQLNTIG 347 Y ++A +P + G F P + I W + S L AW +G TG+P++DAAM QLN G Sbjct: 291 YFMILANHPRLAKGASFKPDYDNIVWEQGSVAKKLFAAWCEGKTGYPLVDAAMHQLNQSG 350 Query: 348 WMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFR 407 +MHNRLRM+ ASFL KDL VDWR GE YF L D +L+SNNGGWQWA+S+G D+ PYFR Sbjct: 351 YMHNRLRMVVASFLTKDLGVDWRWGEAYFAEHLNDFELSSNNGGWQWASSSGCDAQPYFR 410 Query: 408 IFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAP----HSWLDKNDLSL--NYPLPIV 461 IFNP Q ++FDP+G FIR +LP+LN++ + IHAP H L+ ++L +YPLP+V Sbjct: 411 IFNPITQSEKFDPEGKFIRRYLPQLNHLSKKSIHAPWKAGHIELEAAGITLGRDYPLPVV 470 Query: 462 DHKKACHHTLNQYYAAKK 479 DH +A TL +Y KK Sbjct: 471 DHDEARKKTLVRYSVVKK 488 >gi|153007684|ref|YP_001368899.1| deoxyribodipyrimidine photo-lyase [Ochrobactrum anthropi ATCC 49188] gi|151559572|gb|ABS13070.1| Deoxyribodipyrimidine photo-lyase [Ochrobactrum anthropi ATCC 49188] Length = 484 Score = 295 bits (756), Expect = 9e-78, Method: Compositional matrix adjust. Identities = 178/467 (38%), Positives = 256/467 (54%), Gaps = 35/467 (7%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFI-ATPEQWRQHGISARQSHFIYASLLQVQ 69 LVWLRNDLRI DN AL AA + + AV++ T + R G + R ++ SL ++ Sbjct: 22 LVWLRNDLRINDNPALDAAA-ETGGHITAVYVHETVAEIRAPGCAVRW--WLDQSLEAIR 78 Query: 70 KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH 129 K L+ +GI D + L + VT+LF+NR+Y E D L+ +L+ Sbjct: 79 KQLADRGIELLIETG----DPRDILPQLIAKLAVTELFWNRRYAPAEREFDANLKAQLKE 134 Query: 130 R-VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188 SF ++LL P + + Y+V+TPF KAL + +P P R + Sbjct: 135 SGTGVTSFPGNLLLEPWELKTASDTPYQVFTPFAKALRHH-------HIPRPLSRRQWDI 187 Query: 189 TPS-------NIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQG 241 P+ N+P + + D ++ IGE A L +F + + Y E RD+P I G Sbjct: 188 KPTQETCYSPNVPAWA----KKFDGLWNIGEDAARDCLTRFLENTLSTYTEDRDVPGIDG 243 Query: 242 TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSV 301 TS+LSP+L G +S RQ W F+D ++G +L+ELIWR+F H + ++ Sbjct: 244 TSRLSPHLRFGEISARQAWY-ATLAFMDEHHSARAGGEKFLSELIWRDFNYHQL-YHRRD 301 Query: 302 CMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFL 361 I W D +AW++G TGFPIIDA MRQL GWMHNR+RM+ ASFL Sbjct: 302 ISRHDMRDTLSGIAWRDDRAAFEAWRRGQTGFPIIDAGMRQLWATGWMHNRVRMLVASFL 361 Query: 362 VKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQ 421 K+LL+DWR GEE+F L+DGD+ASN G WQW A G D+ PYFR+FNP +QG++FD + Sbjct: 362 TKNLLIDWRKGEEWFWDTLVDGDIASNPGSWQWVAGCGMDAAPYFRVFNPILQGEKFDAE 421 Query: 422 GTFIRHWLPELNNVPTQYIH----APHSWLDKNDLSLN--YPLPIVD 462 G ++RHW+PEL+ + +++H AP L ++L YP PI+D Sbjct: 422 GQYVRHWVPELSGLSNKWLHKPFEAPKDVLTSAGIALGSTYPKPIID 468 >gi|46906833|ref|YP_013222.1| deoxyribodipyrimidine photolyase [Listeria monocytogenes serotype 4b str. F2365] gi|46880099|gb|AAT03399.1| deoxyribodipyrimidine photolyase [Listeria monocytogenes serotype 4b str. F2365] Length = 467 Score = 295 bits (756), Expect = 9e-78, Method: Compositional matrix adjust. Identities = 178/490 (36%), Positives = 255/490 (52%), Gaps = 49/490 (10%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSH-FIYASLLQVQ 69 ++W R DLR+ DNKALY AC +D ++ +F P Q+ I+ SH +AS+ + Sbjct: 4 VMWFRRDLRVNDNKALYHACKEND--LLLLFQVNPAQF----ITGSPSHQAFFASVAHFK 57 Query: 70 KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVT------KLFYNRQYEINEVRRDKLL 123 + + + H F + IE C QQ K+++NR +RD+ Sbjct: 58 QEIDKTA-----HLQIMFGEPIE-----CFQQLKDSLPSWDKVYFNRDETGYGAKRDEAA 107 Query: 124 EKRL-QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAI 182 + + ++ ++F DS L + + YK++TP+ K + +++ P Sbjct: 108 QAFFDEQKIEVQAFHDSYLHSAEEVKKSPTEYYKIFTPYYKKW-----REEIKETPFKVT 162 Query: 183 RLTGPVTPSNIPRFFDYPFQAID-----PMFPIGEQNALHILRKFCKEKVYYYVEQRDIP 237 + ++ F Y Q + P+ IGE+ A L F K V Y + RD P Sbjct: 163 LKHENIRKESL--FLKYEEQFAEMTSDLPILDIGERAANTRLANFIKHDVADYDKARDFP 220 Query: 238 AIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAF 297 + TS LS YL G +S R W L+E + G ++ EL WR+FY + Sbjct: 221 ELDKTSHLSRYLRTGEISIRTIWQSLQE------TEATEGRATFEKELCWRDFYNMIYVS 274 Query: 298 YPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMIT 357 +P+ +P IEW + +AW++G TGFP++DAAMRQL GWMHNRLRMIT Sbjct: 275 FPN-QKNEPIQENYRFIEWENNREYFKAWQEGKTGFPLVDAAMRQLKETGWMHNRLRMIT 333 Query: 358 ASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKR 417 ASFL KDLL+DWR GE+YF L+D D ASN GGWQWAASTG D+VPYFRIFNPT Q ++ Sbjct: 334 ASFLTKDLLIDWRFGEKYFQQMLIDYDPASNIGGWQWAASTGTDAVPYFRIFNPTTQSQK 393 Query: 418 FDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND------LSLNYPLPIVDHKKACHHTL 471 FD G FIR ++ EL N+P +YIH P + L +YP PIVDHK+ + Sbjct: 394 FDSTGKFIRKYVKELANLPDKYIHQPEKMSETEQKEHGLLLGKDYPFPIVDHKERRKLAI 453 Query: 472 NQYYAAKKQS 481 +Y +K+ S Sbjct: 454 ARYEFSKEHS 463 >gi|47093329|ref|ZP_00231098.1| deoxyribodipyrimidine photolyase [Listeria monocytogenes str. 4b H7858] gi|226223217|ref|YP_002757324.1| DNA photolyase [Listeria monocytogenes Clip81459] gi|47018298|gb|EAL09062.1| deoxyribodipyrimidine photolyase [Listeria monocytogenes str. 4b H7858] gi|225875679|emb|CAS04382.1| Putative DNA photolyase [Listeria monocytogenes serotype 4b str. CLIP 80459] gi|328467416|gb|EGF38492.1| deoxyribodipyrimidine photolyase [Listeria monocytogenes 1816] Length = 467 Score = 295 bits (755), Expect = 1e-77, Method: Compositional matrix adjust. Identities = 178/490 (36%), Positives = 254/490 (51%), Gaps = 49/490 (10%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSH-FIYASLLQVQ 69 ++W R DLR+ DNKALY AC D ++ +F P Q+ I+ SH +AS+ + Sbjct: 4 VMWFRRDLRVNDNKALYHACKEDD--LLLLFQVNPAQF----ITGSPSHQAFFASVAHFK 57 Query: 70 KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVT------KLFYNRQYEINEVRRDKLL 123 + + + H F + IE C QQ K+++NR +RD+ Sbjct: 58 QEIDKTA-----HLQIMFGEPIE-----CFQQLKDSLPSWDKVYFNRDETGYGAKRDEAA 107 Query: 124 EKRL-QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAI 182 + + ++ ++F DS L + + YK++TP+ K + +++ P Sbjct: 108 QAFFDEQKIEVQAFHDSYLHSAEEVKKSPTEYYKIFTPYYKKW-----REEIKETPFKVT 162 Query: 183 RLTGPVTPSNIPRFFDYPFQAID-----PMFPIGEQNALHILRKFCKEKVYYYVEQRDIP 237 + ++ F Y Q + P+ IGE+ A L F K V Y + RD P Sbjct: 163 LKHENIRKESL--FLKYEEQFAEMTSDLPILDIGERAANTRLANFIKHDVADYDKARDFP 220 Query: 238 AIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAF 297 + TS LS YL G +S R W L+E + G ++ EL WR+FY + Sbjct: 221 ELDKTSHLSRYLRTGEISIRTIWQTLQE------TEATEGRATFEKELCWRDFYNMIYVS 274 Query: 298 YPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMIT 357 +P+ +P IEW + +AW++G TGFP++DAAMRQL GWMHNRLRMIT Sbjct: 275 FPN-QKNEPIQENYRFIEWENNREYFKAWQEGKTGFPLVDAAMRQLKETGWMHNRLRMIT 333 Query: 358 ASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKR 417 ASFL KDLL+DWR GE+YF L+D D ASN GGWQWAASTG D+VPYFRIFNPT Q ++ Sbjct: 334 ASFLTKDLLIDWRFGEKYFQQMLIDYDPASNIGGWQWAASTGTDAVPYFRIFNPTTQSQK 393 Query: 418 FDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND------LSLNYPLPIVDHKKACHHTL 471 FD G FIR ++ EL N+P +YIH P + L +YP PIVDHK+ + Sbjct: 394 FDSTGKFIRKYVKELANLPDKYIHQPEKMSETEQKEHGLLLGKDYPFPIVDHKERRKLAI 453 Query: 472 NQYYAAKKQS 481 +Y +K+ S Sbjct: 454 ARYEFSKEHS 463 >gi|254824139|ref|ZP_05229140.1| deoxyribodipyrimidine photolyase [Listeria monocytogenes FSL J1-194] gi|254932137|ref|ZP_05265496.1| deoxyribodipyrimidine photolyase [Listeria monocytogenes HPB2262] gi|255521880|ref|ZP_05389117.1| DNA photolyase [Listeria monocytogenes FSL J1-175] gi|293583693|gb|EFF95725.1| deoxyribodipyrimidine photolyase [Listeria monocytogenes HPB2262] gi|293593371|gb|EFG01132.1| deoxyribodipyrimidine photolyase [Listeria monocytogenes FSL J1-194] gi|328475764|gb|EGF46505.1| deoxyribodipyrimidine photolyase [Listeria monocytogenes 220] gi|332311009|gb|EGJ24104.1| Deoxyribodipyrimidine photolyase [Listeria monocytogenes str. Scott A] Length = 467 Score = 295 bits (755), Expect = 1e-77, Method: Compositional matrix adjust. Identities = 178/490 (36%), Positives = 254/490 (51%), Gaps = 49/490 (10%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSH-FIYASLLQVQ 69 ++W R DLR+ DNKALY AC D ++ +F P Q+ I+ SH +AS+ + Sbjct: 4 VMWFRRDLRVNDNKALYHACKEDD--LLLLFQVNPAQF----ITGSPSHQAFFASVAHFK 57 Query: 70 KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVT------KLFYNRQYEINEVRRDKLL 123 + + + H F + IE C QQ K+++NR +RD+ Sbjct: 58 QEIDKTA-----HLQIMFGEPIE-----CFQQLKDTLPSWDKVYFNRDETGYGAKRDEAA 107 Query: 124 EKRL-QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAI 182 + + ++ ++F DS L + + YK++TP+ K + +++ P Sbjct: 108 QAFFDEQKIEVQAFHDSYLHSAEEVKKSPTEYYKIFTPYYKKW-----REEIKETPFKVT 162 Query: 183 RLTGPVTPSNIPRFFDYPFQAID-----PMFPIGEQNALHILRKFCKEKVYYYVEQRDIP 237 + ++ F Y Q + P+ IGE+ A L F K V Y + RD P Sbjct: 163 LKHENIRKESL--FLKYEEQFAEMTSDLPILDIGERAANTRLANFIKHDVADYDKARDFP 220 Query: 238 AIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAF 297 + TS LS YL G +S R W L+E + G ++ EL WR+FY + Sbjct: 221 ELDKTSHLSRYLRTGEISIRTIWQTLQE------TEATEGRATFEKELCWRDFYNMIYVS 274 Query: 298 YPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMIT 357 +P+ +P IEW + +AW++G TGFP++DAAMRQL GWMHNRLRMIT Sbjct: 275 FPN-QKNEPIQENYRFIEWENNREYFKAWQEGKTGFPLVDAAMRQLKETGWMHNRLRMIT 333 Query: 358 ASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKR 417 ASFL KDLL+DWR GE+YF L+D D ASN GGWQWAASTG D+VPYFRIFNPT Q ++ Sbjct: 334 ASFLTKDLLIDWRFGEKYFQQMLIDYDPASNIGGWQWAASTGTDAVPYFRIFNPTTQSQK 393 Query: 418 FDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND------LSLNYPLPIVDHKKACHHTL 471 FD G FIR ++ EL N+P +YIH P + L +YP PIVDHK+ + Sbjct: 394 FDSTGKFIRKYVKELANLPDKYIHQPEKMSETEQKEHGLLLGKDYPFPIVDHKERRKLAI 453 Query: 472 NQYYAAKKQS 481 +Y +K+ S Sbjct: 454 ARYEFSKEHS 463 >gi|254828345|ref|ZP_05233032.1| deoxyribodipyrimidine photolyase [Listeria monocytogenes FSL N3-165] gi|258600738|gb|EEW14063.1| deoxyribodipyrimidine photolyase [Listeria monocytogenes FSL N3-165] Length = 467 Score = 295 bits (755), Expect = 1e-77, Method: Compositional matrix adjust. Identities = 176/486 (36%), Positives = 254/486 (52%), Gaps = 45/486 (9%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSH-FIYASLLQVQ 69 ++W R DLR++DNKALY AC D ++ +F P Q+ I+ SH +AS+ + Sbjct: 4 VMWFRRDLRVSDNKALYHACKEDD--LLLLFQVNPAQF----ITGSPSHQAFFASVAHFK 57 Query: 70 KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVT------KLFYNRQYEINEVRRDKLL 123 + + + ++ F + +E CL+Q K+++NR RD+ Sbjct: 58 QEVDKTALL-----QIMFGEPVE-----CLKQLKETLPSWDKVYFNRDETGYGAERDEAA 107 Query: 124 EKRLQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAI 182 + + I ++F DS L + + YK++TP+ K + +++ P Sbjct: 108 KTFFDEQEIEVQAFHDSYLHSAEEVKKSPTEYYKIFTPYYKKW-----REEIKETPFKVT 162 Query: 183 RLTGPVTPSNIPRFFDYPFQAIDPMFPI---GEQNALHILRKFCKEKVYYYVEQRDIPAI 239 + N+ ++ F + PI GE+ A L F K V Y + RD P + Sbjct: 163 LKADNIRKENLFPKYEEQFAEMTCDLPILDSGEKTANTRLANFIKHDVADYDKARDFPEL 222 Query: 240 QGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYP 299 TS LS YL G +S R W L+E + G + EL WR+FY + +P Sbjct: 223 DKTSHLSRYLRTGEISVRTIWQALQEN------EATEGRAIFEKELCWRDFYNMIYVSFP 276 Query: 300 SVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITAS 359 + +P IEW + +AW++G TGFP++DAAMRQL GWMHNRLRM+TAS Sbjct: 277 NQ-KNEPIQENYRFIEWENNREFFKAWQEGKTGFPLVDAAMRQLKETGWMHNRLRMVTAS 335 Query: 360 FLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFD 419 FL KDLL+DWR GE+YF L+D D ASN GGWQWAASTG D+VPYFRIFNPTIQ ++FD Sbjct: 336 FLTKDLLIDWRFGEKYFQQMLIDYDPASNIGGWQWAASTGTDAVPYFRIFNPTIQSQKFD 395 Query: 420 PQGTFIRHWLPELNNVPTQYIHAPHSWLDKND------LSLNYPLPIVDHKKACHHTLNQ 473 P G FIR ++ EL N+P +YIH P + L +YP PIVDHK+ + + Sbjct: 396 PTGKFIRKYVKELANLPDKYIHQPEKMSETEQKEYGLLLGKDYPFPIVDHKERRKLAIAR 455 Query: 474 YYAAKK 479 Y +K+ Sbjct: 456 YEFSKE 461 >gi|300765347|ref|ZP_07075330.1| deoxyribodipyrimidine photolyase [Listeria monocytogenes FSL N1-017] gi|300513908|gb|EFK40972.1| deoxyribodipyrimidine photolyase [Listeria monocytogenes FSL N1-017] Length = 467 Score = 295 bits (755), Expect = 1e-77, Method: Compositional matrix adjust. Identities = 178/490 (36%), Positives = 254/490 (51%), Gaps = 49/490 (10%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSH-FIYASLLQVQ 69 ++W R DLR+ DNKALY AC D ++ +F P Q+ I+ SH +AS+ + Sbjct: 4 VMWFRRDLRVNDNKALYHACKEDD--LLLLFQVNPAQF----ITGSPSHQGFFASVAHFK 57 Query: 70 KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVT------KLFYNRQYEINEVRRDKLL 123 + + + H F + IE C QQ K+++NR +RD+ Sbjct: 58 QEIDKTA-----HLQIMFGEPIE-----CFQQLKDSLPSWDKVYFNRDETGYGAKRDEAA 107 Query: 124 EKRL-QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAI 182 + + ++ ++F DS L + + YK++TP+ K + +++ P Sbjct: 108 QAFFDEQKIEVQAFHDSYLHSAEEVKKSPTEYYKIFTPYYKKW-----REEIKETPFKVT 162 Query: 183 RLTGPVTPSNIPRFFDYPFQAID-----PMFPIGEQNALHILRKFCKEKVYYYVEQRDIP 237 + ++ F Y Q + P+ IGE+ A L F K V Y + RD P Sbjct: 163 LKHENIRKESL--FLKYEEQFAEMTSDLPILDIGERAANTRLANFIKHDVADYDKARDFP 220 Query: 238 AIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAF 297 + TS LS YL G +S R W L+E + G ++ EL WR+FY + Sbjct: 221 ELDKTSHLSRYLRTGEISIRTIWQTLQE------TEATEGRATFEKELCWRDFYNMIYVS 274 Query: 298 YPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMIT 357 +P+ +P IEW + +AW++G TGFP++DAAMRQL GWMHNRLRMIT Sbjct: 275 FPN-QKNEPIQENYRFIEWENNREYFKAWQEGKTGFPLVDAAMRQLKETGWMHNRLRMIT 333 Query: 358 ASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKR 417 ASFL KDLL+DWR GE+YF L+D D ASN GGWQWAASTG D+VPYFRIFNPT Q ++ Sbjct: 334 ASFLTKDLLIDWRFGEKYFQQMLIDYDPASNIGGWQWAASTGTDAVPYFRIFNPTTQSQK 393 Query: 418 FDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND------LSLNYPLPIVDHKKACHHTL 471 FD G FIR ++ EL N+P +YIH P + L +YP PIVDHK+ + Sbjct: 394 FDSTGKFIRKYVKELANLPDKYIHQPEKMSETEQKEHGLLLGKDYPFPIVDHKERRKLAI 453 Query: 472 NQYYAAKKQS 481 +Y +K+ S Sbjct: 454 ARYEFSKEHS 463 >gi|254414764|ref|ZP_05028529.1| deoxyribodipyrimidine photolyase family [Microcoleus chthonoplastes PCC 7420] gi|196178612|gb|EDX73611.1| deoxyribodipyrimidine photolyase family [Microcoleus chthonoplastes PCC 7420] Length = 475 Score = 294 bits (753), Expect = 2e-77, Method: Compositional matrix adjust. Identities = 177/465 (38%), Positives = 248/465 (53%), Gaps = 19/465 (4%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 L W R DLRI+DN L AAC S KVI VF P+ + I+ + ++ L ++Q+ Sbjct: 6 LFWHRRDLRISDNIGLAAACQKSQ-KVIGVFCLDPDILERDDIAPARVTYMMGCLQELQQ 64 Query: 71 SLSQKGI-VFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH 129 ++ G + HQ + + + + + +NR E RD+ ++ L+ Sbjct: 65 RYAEAGSQLLILHQ-----NPSQGIPTLADTLNAKAVVWNRDVEPYARTRDRTVQDALEE 119 Query: 130 RVIC-KSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSL------PVPAI 182 + I +SF D +L PG I ++ YKVYTPF K A SL Sbjct: 120 KGIAVESFWDQLLHAPGEIRTNSGNPYKVYTPFWKNWKDQAKAAPAESLKNGEGLTETEQ 179 Query: 183 RLTGPVTPSNIPRFFDYPFQAIDP-MFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQG 241 + V +P + F + M GE+ A L +FC + Y QR++PAI G Sbjct: 180 DVVKKVGVMELPTAKELGFTWDNSLMLEPGEKAAKQRLEEFCDRAIDDYQHQRNLPAIDG 239 Query: 242 TSQLSPYLSIGVLSPRQCWNRLKEEFV-DLLIKPKSGAFSWLNELIWREFYRHLMAFYPS 300 TS+LS L G + R W + + + G +W EL WREFY+H + F+P Sbjct: 240 TSRLSAALKFGAIGIRTVWQATQTAIERSRSDETRDGIQTWQQELAWREFYQHALYFFPE 299 Query: 301 VCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASF 360 + G P+ E W+ + L QAW +G TG+PI+DAAMRQLN GWMHNR RMI ASF Sbjct: 300 LASG-PYRDTFENFPWDNNQTLFQAWCEGRTGYPIVDAAMRQLNQTGWMHNRCRMIVASF 358 Query: 361 LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDP 420 L KDL+++W+ GE YFM +L DGDLA+NNGGWQW+AS+G D P RIFNP Q +++DP Sbjct: 359 LTKDLIINWQWGETYFMQKLYDGDLAANNGGWQWSASSGMDPKP-LRIFNPASQAQKYDP 417 Query: 421 QGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKK 465 G +IR WLPEL+++ T+ + D+ S YP PIVDHKK Sbjct: 418 DGEYIRQWLPELSSLDTKDLVTGKISSDECS-SCGYPEPIVDHKK 461 >gi|302693713|ref|XP_003036535.1| hypothetical protein SCHCODRAFT_49182 [Schizophyllum commune H4-8] gi|300110232|gb|EFJ01633.1| hypothetical protein SCHCODRAFT_49182 [Schizophyllum commune H4-8] Length = 587 Score = 294 bits (753), Expect = 2e-77, Method: Compositional matrix adjust. Identities = 181/516 (35%), Positives = 268/516 (51%), Gaps = 58/516 (11%) Query: 13 WLR-NDLRITDNKALY---AACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 W+R D+RI DN+AL A + ++A+++ +P+ + H AR+ F+ +L + Sbjct: 74 WMRMQDMRIEDNRALALASAEAQKTKKPLVAIYVISPQDYAAHDRGARRIDFMLRNLRII 133 Query: 69 QKSLSQKGI---VFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD-KLLE 124 + L + I V + S I L S KL+ N +YE++E+RRD ++ E Sbjct: 134 KIKLDEMHIPLHVVTHAPRSTLPRRIISLLSLVGAH---KLYANIEYEVDELRRDIQVCE 190 Query: 125 KRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSL---PVPA 181 + + D ++ PG + Y VY+PF++ + L + R L P PA Sbjct: 191 IAKKDGMKATFVHDKCIVEPGVAVKKDGSYYAVYSPFQRLWLATLNDSQGRFLDPSPEPA 250 Query: 182 IRLT--------GPVTPSNIPRFFDYPFQAIDPM------FPIGEQNALHILRKFCKEK- 226 G + N+P + A D +P GE+ AL +L +F K Sbjct: 251 ANSKSVRKHEKLGDLFEGNVPETVEGFELAEDDRKKMAEYWPAGEEAALLVLDRFLSTKS 310 Query: 227 -----------------------VYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRL 263 ++ Y ++RD TS++SPYL+ GV+S R+C Sbjct: 311 RPEQAGGVNPLSQGAEESDKYSRIHVYGDERDRVNADTTSRISPYLASGVISARRCVRST 370 Query: 264 KEEFVDLLIKP--KSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEW-NKDS 320 + + +G W+ EL WR+FY ++ +P V MG+PFI I W D Sbjct: 371 MKLTGSSKVDGGRNTGIGRWVQELAWRDFYVSVLVGFPRVSMGRPFIEKYADIVWEGGDI 430 Query: 321 HLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQL 380 ++AWK+G TG+PI+DA MR + GW+HNRLRM TA FLVKDL+VDWR+GE Y+M L Sbjct: 431 SEVRAWKEGRTGYPIVDAGMRCIKETGWLHNRLRMTTAMFLVKDLMVDWRVGERYYMQNL 490 Query: 381 LDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYI 440 +DGDLASNNGGWQW+ASTG D PYFRIFNP +Q ++ DP+G FIR +LPEL ++ + I Sbjct: 491 IDGDLASNNGGWQWSASTGVDPAPYFRIFNPYLQSEKADPEGDFIRMFLPELKSLKGKEI 550 Query: 441 HAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYA 476 H P + + K L YPLPIV H +A + ++ A Sbjct: 551 HNPPANVAKR---LGYPLPIVKHSEAKDRAIRRFKA 583 >gi|114321405|ref|YP_743088.1| deoxyribodipyrimidine photo-lyase type I [Alkalilimnicola ehrlichii MLHE-1] gi|114227799|gb|ABI57598.1| deoxyribodipyrimidine photo-lyase type I [Alkalilimnicola ehrlichii MLHE-1] Length = 479 Score = 293 bits (750), Expect = 4e-77, Method: Compositional matrix adjust. Identities = 181/487 (37%), Positives = 261/487 (53%), Gaps = 33/487 (6%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 LVWLR DLR+TDN AL A VIAV++ PE+ Q+ A +++ SL + Sbjct: 6 LVWLRRDLRLTDNPALDQAARRG-GPVIAVYLHAPEETPQYPPGAASHWYLHHSLKALGP 64 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130 +L+Q GI + ++ L + +++NR YE + V RD+ +++ L+ Sbjct: 65 ALAQAGIPLVLRRGP----ALATLRALIRATGAGAVYWNRLYEPDAVARDRTVKQALRTE 120 Query: 131 VI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQA------DLRSLPVPAIR 183 + C+SF ++L P ++ N A + Y+ +TPF +A + A DLR PVPA+ Sbjct: 121 GLDCRSFPTALLHEPWAVRNQADRPYRAFTPFWRACRRQPPPAAPLPAPDLRDRPVPAVE 180 Query: 184 LTGPVTPSNIPRFFDYPFQ-AIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGT 242 +PR P+ + + GE AL L F +++ Y + RD PA GT Sbjct: 181 GLDLAALGLLPR---TPWDTGLRNTWQAGESAALARLEAFAADRLARYAQDRDRPAEPGT 237 Query: 243 SQLSPYLSIGVLSPRQCWNRL---KEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYP 299 S LSP L G LSPRQ W ++ +E V P+ ++L+EL WREF HL+ +P Sbjct: 238 SGLSPALHFGELSPRQVWWQVMAAREAGV-----PEDACETFLSELGWREFAHHLLWSHP 292 Query: 300 SVCMGKPFIPWTEKIEWNKD--SHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMIT 357 + P W D L AW+ G TG P++DA M +L GWMHNR+RM+T Sbjct: 293 DLG-DAPVDDRFGAFPWRPDPGDGWLHAWQAGRTGIPLVDAGMHELWQTGWMHNRVRMVT 351 Query: 358 ASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKR 417 SFLVK L + W+ GE +F L+D D ASN GWQW A G D+ PYFRIFNP QG+R Sbjct: 352 GSFLVKHLRLPWQRGERWFRDTLVDWDAASNAMGWQWVAGCGADAAPYFRIFNPVRQGER 411 Query: 418 FDPQGTFIRHWLPELNNVPTQYIH----APHSWLDKNDLSL--NYPLPIVDHKKACHHTL 471 FDPQG ++R WLP L N+P +YIH AP + L + ++L +YP P++D + L Sbjct: 412 FDPQGRYVRRWLPALANLPDKYIHAPWTAPEAVLRRAGVTLGSDYPCPLIDLRLGREQAL 471 Query: 472 NQYYAAK 478 + + A K Sbjct: 472 SAFQAIK 478 >gi|154296018|ref|XP_001548442.1| hypothetical protein BC1G_13162 [Botryotinia fuckeliana B05.10] gi|150843814|gb|EDN19007.1| hypothetical protein BC1G_13162 [Botryotinia fuckeliana B05.10] Length = 607 Score = 293 bits (750), Expect = 4e-77, Method: Compositional matrix adjust. Identities = 173/486 (35%), Positives = 257/486 (52%), Gaps = 27/486 (5%) Query: 13 WLRNDLRITDNKALYAACHNSDA---KVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69 W + DLR DN AL A + ++ ++I +P+ + H + + FI +L ++ Sbjct: 116 WFKCDLRTKDNTALSMASQKAKELGIPLVTMYIVSPQDFEAHLTAPVRVDFILRTLDILK 175 Query: 70 KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFY-NRQYEINEVRRDKLLEKRLQ 128 K L++ I Y + + +E L + FY N +YE++E+RR+ + + Sbjct: 176 KDLAKLDIPL-YVETIDKRKRVESRILELLGEWGCSHFYANMEYEVDELRREARMVRACV 234 Query: 129 HRVICKS-FDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQ-ADLRSL-------PV 179 + IC D+ ++ PG + + + Y VYTP+ K+ + + + +DL L P Sbjct: 235 EKGICMDVIHDTCVVRPGELKSGQGKQYAVYTPWFKSWVAYVHENSDLLELFDAPEKNPS 294 Query: 180 PAIRLTGPVTPSNIP------RFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQ 233 A + + + IP + M+P GE A L KF EK+ Y + Sbjct: 295 SARKTFAKLFETEIPDAPKNKSLTSEEKERFRSMWPAGEHAAHERLSKFADEKINKYQDH 354 Query: 234 RDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKE-EFVDLLIKPKSGAFSWLNELIWREFYR 292 R+ P++ TS LS + + G LS R ++ L G +W++E+ WR+FY+ Sbjct: 355 RNFPSLNSTSSLSVHFASGTLSSRTAIRTARDHNNTKKLNAGYQGIQTWISEVAWRDFYK 414 Query: 293 HLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNR 352 H++ +P VCM KPF P IEW + QAW +G TG+PI+DAAMRQLN G+MHNR Sbjct: 415 HVLVHWPYVCMNKPFKPEYTNIEWEYNRAHFQAWTEGRTGYPIVDAAMRQLNHCGYMHNR 474 Query: 353 LRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPT 412 RMI SFL K LL+DWR+GE YFM L+DGD ASNNGGW + ASTG D PYFRIFNP Sbjct: 475 SRMIVGSFLAKHLLLDWRMGERYFMEHLIDGDFASNNGGWGFCASTGVDPQPYFRIFNPL 534 Query: 413 IQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSL----NYPLPIVDHKKACH 468 +Q ++FD +G +IR W+ EL V + IH P+ DK + YP IV+HK + Sbjct: 535 LQSEKFDAEGEYIRKWVEELKGVKGKAIHEPYG--DKEAAKIAKKSGYPERIVEHKVSRE 592 Query: 469 HTLNQY 474 L +Y Sbjct: 593 RCLKRY 598 >gi|91774946|ref|YP_544702.1| deoxyribodipyrimidine photo-lyase type I [Methylobacillus flagellatus KT] gi|91708933|gb|ABE48861.1| deoxyribodipyrimidine photo-lyase type I [Methylobacillus flagellatus KT] Length = 481 Score = 293 bits (749), Expect = 5e-77, Method: Compositional matrix adjust. Identities = 177/493 (35%), Positives = 265/493 (53%), Gaps = 40/493 (8%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M+ LVW R DLR D+ ALY A +S+ +V+ F+ + R+ FI+ S+ Sbjct: 1 MTKSLVWFRRDLRDYDHAALYHALKDSE-QVVCAFVFDTDILDGLPRDDRRVEFIWESVR 59 Query: 67 QVQKSLSQKG--IVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLE 124 +++ +L ++G ++ ++ + + E + + V ++ NR YE V+RD + Sbjct: 60 ELKLALQERGGDLLVRHGKAT------EEIPALASVLGVECVYCNRDYEPAAVKRDDTVS 113 Query: 125 KRLQHRVIC-KSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPA-I 182 ++L + I KSF D V+ I+ + + V+TP++ A ++ L L++ PV I Sbjct: 114 QQLGTQGIAFKSFKDQVIFERDEIMTKSGTPFSVFTPYKNACLRKLDDFHLKAYPVDRYI 173 Query: 183 RLTGPVTPSNIPRFFDYPFQAIDPM---FPIGEQNALHILRKFCKEKVYYYVEQRDIPAI 239 P +P F + P G + + F E++ Y + RD PA+ Sbjct: 174 HHLAQSAPQPMPSLESLAFARSNLKQLRLPTGMSGGMALFEDFS-ERMPRYRDARDFPAL 232 Query: 240 QGTSQLSPYLSIGVLS----PRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLM 295 +G S LS +L G +S R W + +GA +WLNEL+WR+FY ++ Sbjct: 233 KGPSYLSVHLRFGTVSIRHLARTAWQ-----------QGGAGAETWLNELLWRDFYFQVL 281 Query: 296 AFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRM 355 +P V G F P E I + L +AW +G TG+P++DAAMRQ+N G+MHNRLRM Sbjct: 282 YHHPQVAEGHSFKPEFEHIPFPNGESLFKAWCEGRTGYPLVDAAMRQINQTGYMHNRLRM 341 Query: 356 ITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQG 415 + A FLVKDLL+DWR GE YF +L+D DLA+NNGGWQWAASTG D+ P+FRIFNP Q Sbjct: 342 VAAGFLVKDLLIDWRWGERYFAEKLIDFDLAANNGGWQWAASTGCDAQPWFRIFNPVTQS 401 Query: 416 KRFDPQGTFIRHWLPELNNVPTQYIHAPHSW----LDKNDLSL----NYPLPIVDHKKAC 467 ++FDP+G FIR ++PEL + IHAP W L + L L +YP P+VDH Sbjct: 402 EKFDPEGKFIRKYVPELQPCDDKEIHAP--WLIPPLRQQALGLVIGKDYPAPVVDHAMRR 459 Query: 468 HHTLNQYYAAKKQ 480 L+ Y A + Sbjct: 460 EQVLSLYRQASSR 472 >gi|224498666|ref|ZP_03667015.1| hypothetical protein LmonF1_02791 [Listeria monocytogenes Finland 1988] Length = 467 Score = 293 bits (749), Expect = 6e-77, Method: Compositional matrix adjust. Identities = 172/486 (35%), Positives = 253/486 (52%), Gaps = 45/486 (9%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSH-FIYASLLQVQ 69 ++W R DLR++DNKALY AC D ++ +F P Q+ I+ SH +AS+ + Sbjct: 4 VMWFRRDLRVSDNKALYHACKEDD--LLLLFQVNPAQF----ITGSPSHQAFFASVAHFK 57 Query: 70 KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVT------KLFYNRQYEINEVRRDKLL 123 + + + ++ F + + CL+Q K+++NR RD+ Sbjct: 58 QEVDKTALL-----QIMFGEPVG-----CLKQLKETLPSWDKVYFNRDETGYGAERDEAA 107 Query: 124 EKRLQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAI 182 + + I ++F DS L + + YK++TP+ K + +++ P Sbjct: 108 KTFFDEQEIEVQAFHDSYLHSAEEVKKSPTEYYKIFTPYYKKW-----REEIKETPFKVT 162 Query: 183 RLTGPVTPSNIPRFFDYPFQAIDPMFPI---GEQNALHILRKFCKEKVYYYVEQRDIPAI 239 + N+ ++ F + FPI GE+ A L F K + Y + RD P + Sbjct: 163 LKADNIRKENLFPKYEEQFAEMTCDFPILDSGEKTANTRLANFIKHDIADYDKARDFPEL 222 Query: 240 QGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYP 299 TS LS YL G +S R W L+E + G ++ EL WR+FY + +P Sbjct: 223 DKTSHLSRYLRTGEISIRTIWQALQE------TEATEGRATFEKELCWRDFYNMIYVSFP 276 Query: 300 SVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITAS 359 + +P IEW + +AW+ G TGFP++DAAMRQL GWMHNRLRM+TAS Sbjct: 277 NQ-KNEPIQENYRFIEWENNREFFKAWQDGKTGFPLVDAAMRQLKETGWMHNRLRMVTAS 335 Query: 360 FLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFD 419 FL KDLL+DWR GE+YF L+D D ASN GGWQWAASTG D+VPYFRIFNPT Q ++FD Sbjct: 336 FLTKDLLIDWRFGEKYFQQMLIDYDSASNIGGWQWAASTGTDAVPYFRIFNPTTQSQKFD 395 Query: 420 PQGTFIRHWLPELNNVPTQYIHAPHSWLDKND------LSLNYPLPIVDHKKACHHTLNQ 473 P G FIR ++ EL N+P +YIH P + L +YP P++DHK+ + + Sbjct: 396 PTGKFIRKYVKELANLPDKYIHQPEKMSETEQKEYGLLLGKDYPFPLIDHKERRKLAIAR 455 Query: 474 YYAAKK 479 Y +K+ Sbjct: 456 YEFSKE 461 >gi|290892787|ref|ZP_06555778.1| deoxyribodipyrimidine photolyase [Listeria monocytogenes FSL J2-071] gi|290557599|gb|EFD91122.1| deoxyribodipyrimidine photolyase [Listeria monocytogenes FSL J2-071] Length = 467 Score = 292 bits (748), Expect = 8e-77, Method: Compositional matrix adjust. Identities = 173/485 (35%), Positives = 251/485 (51%), Gaps = 39/485 (8%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSH-FIYASLLQVQ 69 ++W R DLR+ DNKALY AC D ++ +F P Q+ I+ SH +AS+ + Sbjct: 4 VMWFRRDLRVNDNKALYHACKEDD--LLLLFQVNPAQF----ITGSPSHQAFFASVAHFK 57 Query: 70 KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVT------KLFYNRQYEINEVRRDKLL 123 + + + H F + IE C QQ K+++N +RD+ Sbjct: 58 QEIDKNA-----HVQIMFGEPIE-----CFQQLKDTLPSWDKVYFNLDETGYGAKRDEAA 107 Query: 124 EKRL-QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAI 182 + + ++ +SF DS L + + YK++TP+ K + + + + P Sbjct: 108 QAFFDEQKIEVQSFHDSYLHSAEEVKKSPTEYYKIFTPYYKKWREEIKETPFKVTLKPEN 167 Query: 183 RLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGT 242 + P +F + P+ GE+ A L F K + Y + RD P + T Sbjct: 168 IWKESLFPKYEEQFAEMTCDL--PILDSGERAANTRLANFIKHDIADYDKARDFPELDKT 225 Query: 243 SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVC 302 S LS YL G +S R W L+E + G ++ EL WR+FY + +P+ Sbjct: 226 SHLSRYLRTGEISIRTIWQELQE------TEATEGRATFEKELCWRDFYNMIYVSFPNQ- 278 Query: 303 MGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLV 362 +P IEW + +AW++G TGFP++DAAMRQL GWMHNRLRMITASFL Sbjct: 279 KNEPIQENYRFIEWENNREFFKAWQEGKTGFPLVDAAMRQLKETGWMHNRLRMITASFLT 338 Query: 363 KDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQG 422 KDLL+DWR GE+YF L+D D ASN GGWQWAASTG D+VPYFRIFNPT Q ++FDP Sbjct: 339 KDLLIDWRFGEKYFQQMLIDYDPASNIGGWQWAASTGTDAVPYFRIFNPTTQSQKFDPTA 398 Query: 423 TFIRHWLPELNNVPTQYIHAPHSWLDKND------LSLNYPLPIVDHKKACHHTLNQYYA 476 FIR ++ EL N+P +YIH P + L +YP P++DHK+ + +Y Sbjct: 399 KFIRKYVKELANLPDKYIHQPEKMSETEQKEYGLLLGKDYPFPLIDHKERRKLAIARYEF 458 Query: 477 AKKQS 481 +K++S Sbjct: 459 SKERS 463 >gi|297539339|ref|YP_003675108.1| Deoxyribodipyrimidine photo-lyase [Methylotenera sp. 301] gi|297258686|gb|ADI30531.1| Deoxyribodipyrimidine photo-lyase [Methylotenera sp. 301] Length = 479 Score = 292 bits (747), Expect = 9e-77, Method: Compositional matrix adjust. Identities = 182/477 (38%), Positives = 261/477 (54%), Gaps = 49/477 (10%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISA-RQSHFIYASLLQVQ 69 LVW R DLR D+ ALY A +S KV VF+ Q A R+ FI+ S+ +++ Sbjct: 14 LVWFRRDLRDYDHAALYHALKSS-KKVYCVFVFDTAILNQLNDKADRRVEFIWESVRELK 72 Query: 70 KSLSQKG---IVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 SL + G IV N D I L + L V +F N YE + + RD + ++ Sbjct: 73 TSLQKHGSDLIVLH----GNAGDEIPKLANTLL---VNAVFTNHDYEPSAITRDAHVAEQ 125 Query: 127 LQHRVIC-KSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185 L I + D V+ +LN + + Y V+TP++ ++ + ++ PV Sbjct: 126 LNKSSIAFHHYKDHVIFEKDEVLNLSGKPYCVFTPYKNMWLKTVNDFFFKAYPVDN---- 181 Query: 186 GPVTPSNIPRFFDYPFQAIDPM-----------FPIGEQNALHILRKFCKEKVYYYVEQR 234 +N+ + PF +++ + P G Q L + F E++ Y + R Sbjct: 182 ---HLNNLAKTNASPFISLEDLGFKHTNLASMRLPTGMQGGLTLFNDFI-ERMSRYKDAR 237 Query: 235 DIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHL 294 D PAI+G S LS +L G +S R + + +GA +WL+ELIWR+FY + Sbjct: 238 DFPAIKGVSYLSVHLRFGTISIRHLAR-------EAMQSANTGAQTWLSELIWRDFYVQI 290 Query: 295 MAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLR 354 + PSV G+ + E +++ D+ L QAW G TG+P++DAAMRQLNT G+MHNRLR Sbjct: 291 LHHNPSVAAGRAYKVEFESLKFPNDTALFQAWCDGKTGYPLVDAAMRQLNTTGFMHNRLR 350 Query: 355 MITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQ 414 M+ ASFLVKDLL+DWR GE YF +L+D DL++NNGGWQWAASTG D+ P+FRIFNP Q Sbjct: 351 MVAASFLVKDLLIDWRWGERYFAEKLIDFDLSANNGGWQWAASTGCDAQPWFRIFNPITQ 410 Query: 415 GKRFDPQGTFIRHWLPELNNVPTQYIHAPHSW------LDKNDLSL--NYPLPIVDH 463 +RFD QG FIR ++PEL + IHAP W L + +LS+ +Y P+VDH Sbjct: 411 SERFDAQGKFIRKYVPELTKCNDKEIHAP--WLIPLLRLQELNLSIGKDYAAPVVDH 465 >gi|71909505|ref|YP_287092.1| deoxyribodipyrimidine photo-lyase type I [Dechloromonas aromatica RCB] gi|71849126|gb|AAZ48622.1| deoxyribodipyrimidine photo-lyase type I [Dechloromonas aromatica RCB] Length = 470 Score = 292 bits (747), Expect = 9e-77, Method: Compositional matrix adjust. Identities = 182/488 (37%), Positives = 266/488 (54%), Gaps = 41/488 (8%) Query: 11 LVWLRNDLRITDNKALYAACHNSD----AKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 LVW R DLR D+ AL AA + A V I P R R+ HFI SL+ Sbjct: 7 LVWFRRDLRDHDHAALSAALAEAQQVYCAFVFDSEILDPLPTRHD----RRVHFIRESLV 62 Query: 67 QVQKSLSQKG--IVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLE 124 ++ +L +G ++ ++ Q +++ + + + V+ +F NR YE + RRD + Sbjct: 63 ELDAALRARGGGLIIRHGQ------AVDEIPALARRLGVSAVFTNRDYEPSAKRRDAQVA 116 Query: 125 KRLQHRVIC-KSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIR 183 ++L++ I D + +L A + + V+TP++ A ++ L AD + P R Sbjct: 117 RQLRNDDIAFHGVKDQAIFDGDEVLTQAGKAFSVFTPYKNAWLKRLTTADYAAWPCDG-R 175 Query: 184 LTGPVTPSNIPRFFDYPFQAIDPMFPIGEQ----NALHILRKFCKEKVYYYVEQRDIPAI 239 L G + IP + F D + +G Q A + F ++++ Y RD PA+ Sbjct: 176 LAGQEL-AGIPTLEEIGFTPTD-LAELGIQPGMSGAKGLWDDFSRDRIERYGSLRDFPAV 233 Query: 240 QGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYP 299 +G S LS +L G +S RQ + D +WL+ELIWR+FY ++ +P Sbjct: 234 KGVSYLSVHLRFGTISIRQLVRQALAHQAD----------TWLSELIWRDFYFMILDHFP 283 Query: 300 SVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITAS 359 V G F P + I+W AW +G TG+P++DAAMRQLN GWMHNRLRM+ AS Sbjct: 284 HVA-GHAFKPEYDAIQWASRPEAFAAWCEGCTGYPLVDAAMRQLNFSGWMHNRLRMVVAS 342 Query: 360 FLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFD 419 FL KDL +DWR+GE+YF QL D DL++NNGGWQWA+S+G D+ PYFRIFNP Q ++FD Sbjct: 343 FLTKDLGIDWRLGEKYFAEQLNDFDLSANNGGWQWASSSGCDAQPYFRIFNPVTQSEKFD 402 Query: 420 PQGTFIRHWLPELNNVPTQYIHAP--HSWLDKNDLSL----NYPLPIVDHKKACHHTLNQ 473 +G FIR ++PEL V +YIHAP +++ L + +YP PIVDH A TL + Sbjct: 403 AEGKFIRRYVPELAKVHDKYIHAPWKMGRIEQEALGVVIGRDYPSPIVDHATARDETLAR 462 Query: 474 YYAAKKQS 481 Y KKQ+ Sbjct: 463 YAVVKKQA 470 >gi|71023993|ref|XP_762226.1| hypothetical protein UM06079.1 [Ustilago maydis 521] gi|46101669|gb|EAK86902.1| hypothetical protein UM06079.1 [Ustilago maydis 521] Length = 655 Score = 292 bits (747), Expect = 1e-76, Method: Compositional matrix adjust. Identities = 186/525 (35%), Positives = 268/525 (51%), Gaps = 61/525 (11%) Query: 11 LVWLR-NDLRITDNKALYAAC--------HNSDAKVIAVFIATPEQWRQHGISARQSHFI 61 + W+R +DLRI DN+AL A + +IA+F+ TP + H AR+ F+ Sbjct: 125 VYWMRMHDLRIHDNRALAHASSLAAARRKNGKGGHLIALFVITPADYSAHDRGARRIDFV 184 Query: 62 YASLLQVQKSLSQKGIVFQYHQCSNFDDS--IEWLDSYCLQQRVTKLFYNRQYEINEVRR 119 +L ++ + I F + S D + E + S C Q ++L N +YE++E+ R Sbjct: 185 LRTLASLKSQFDKLDIPFVVYTYSGEDRAQVGEKVFSLCEQCDASQLTANIEYEVDELWR 244 Query: 120 D-KLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQN------LVQA 172 D +LE + + V D ++PPG I + + Y V++P+ + ++ L++A Sbjct: 245 DLAMLEAKDKKGVSFSLLHDCYVVPPGRIKTNDGRPYSVFSPWNRRWTESISKDMSLIEA 304 Query: 173 D---------LRSLPVPAIRL------TGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALH 217 +RS P TG P + F + + ++P +Q A Sbjct: 305 SEDPEANPKSIRSHPKLGALFELSKLGTGYGIPEELSGFECKDREYMAKLWPATDQAAHQ 364 Query: 218 ILRKFCKEK--------------------------VYYYVEQRDIPAIQGTSQLSPYLSI 251 +L F K K + Y E R++ + GTS++SPYL+ Sbjct: 365 VLDNFIKGKGGETALDRAANEPSTAEVGANAKDSRLARYAEGRNLLSENGTSRISPYLAA 424 Query: 252 GVLSPRQCWNRLKE-EFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPW 310 GV+S R+C R K+ L + SG W E+ +R+FY H++A +P VCMG FI Sbjct: 425 GVVSARECLRRTKQLTKGKLHVGRDSGVAMWNTEISFRDFYAHVLAAWPKVCMGHAFITK 484 Query: 311 TEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWR 370 E + W DS L AWKQG TG+PI+DAA RQ G++HNR RMI+A FL K LL DWR Sbjct: 485 YEDVVWETDSSTLDAWKQGRTGYPIVDAAQRQCIQQGYIHNRGRMISAMFLTKHLLHDWR 544 Query: 371 IGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLP 430 GE +F +D D ASNNGGWQW+ASTG D PYFRIFNP Q ++ DP G +IRH++P Sbjct: 545 HGERHFSLNFIDQDFASNNGGWQWSASTGTDPQPYFRIFNPLSQSEKCDPHGDYIRHFVP 604 Query: 431 ELNNVPTQYIHAPHSWLDKNDLS-LNYPLPIVDHKKACHHTLNQY 474 EL NV IH P L K + L YP PIV+H +A L +Y Sbjct: 605 ELKNVKGNAIHDPFHRLSKAEFEKLGYPKPIVEHAQARQRALKRY 649 >gi|190891474|ref|YP_001978016.1| deoxyribodipyrimidine photo-lyase [Rhizobium etli CIAT 652] gi|190696753|gb|ACE90838.1| deoxyribodipyrimidine photo-lyase protein [Rhizobium etli CIAT 652] Length = 482 Score = 291 bits (746), Expect = 1e-76, Method: Compositional matrix adjust. Identities = 178/495 (35%), Positives = 263/495 (53%), Gaps = 30/495 (6%) Query: 3 ATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIY 62 A A ++W R DLR+ DNKAL AA H S +I+++I PE + A QS +++ Sbjct: 2 ANDAAKPLILWFRKDLRLDDNKALNAA-HFSGRPIISLYIREPEAAGTGPLGAAQSWWLH 60 Query: 63 ASLLQVQKSLSQK--GIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120 SL + SL ++ G++ + L S Q +F+NR+Y+ + D Sbjct: 61 HSLEALDGSLRKRRGGLLLASGEALGV------LRSLIRQSDADAVFWNRRYDPPGISID 114 Query: 121 KLLEKRLQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQA--DLRSL 177 +E L+ + I KSF +L P ++ + Y+VYTPF +AL +++ D+ S Sbjct: 115 AHIEHELEKQAIEVKSFGGQLLHEPSQLMTGSGTPYRVYTPFWRALERSIEPEPLDIPSK 174 Query: 178 PVPAIRLTGPVTPSNIPRFFDYPFQAID--PMFPIGEQNALHILRKFCKEKVYYYVEQRD 235 A +L G + P A + ++ GE+ A LR F ++++ Y E RD Sbjct: 175 LQLASKLPGSEKLESWKLLSTQPDWASNFADLWTPGEEGAQEKLRTFIEDRLDGYKENRD 234 Query: 236 IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLM 295 PA TS LSP+L++G +SP + W+ + L P + + E+ WR+F HL+ Sbjct: 235 YPAKPATSMLSPHLALGEISPARIWDATRGLSKHL---PAADIVHFRKEIAWRDFSYHLL 291 Query: 296 AFYPSVCMGKPFIPWTEKI---EWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNR 352 A +P + W ++ EW AW +G TG+PI+DA MRQL GWMHNR Sbjct: 292 AHFPRLATAN----WDDRFDRFEWGSAEEDFNAWSRGMTGYPIVDAGMRQLWRYGWMHNR 347 Query: 353 LRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPT 412 +RMI ASFL+KDL+VDWR GE +F L+D D A+N WQW A +G D+ P+FR+FNP Sbjct: 348 VRMIAASFLIKDLMVDWRHGEAWFRDTLVDADPANNAASWQWVAGSGADASPFFRVFNPV 407 Query: 413 IQGKRFDPQGTFIRHWLPELNNVPTQYIH----APHSWLDKNDLSLN--YPLPIVDHKKA 466 +QG++FDP G F+R +PEL + +YIH AP S LD D+ L YP P+VDH A Sbjct: 408 LQGEKFDPDGDFVRSHVPELRKLDAKYIHRPFEAPKSVLDAADVILGETYPEPVVDHAGA 467 Query: 467 CHHTLNQYYAAKKQS 481 L Y A + + Sbjct: 468 RKRALAAYNAIRGAA 482 >gi|254830427|ref|ZP_05235082.1| hypothetical protein Lmon1_03662 [Listeria monocytogenes 10403S] Length = 467 Score = 291 bits (746), Expect = 1e-76, Method: Compositional matrix adjust. Identities = 175/486 (36%), Positives = 255/486 (52%), Gaps = 45/486 (9%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSH-FIYASLLQVQ 69 ++W R DLR+ DNKALY AC D ++ +F P Q+ I+ SH +AS+ + Sbjct: 4 VMWFRRDLRVNDNKALYHACKEDD--LLLLFQVNPAQF----ITGSPSHQAFFASVAHFK 57 Query: 70 KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVT------KLFYNRQYEINEVRRDKLL 123 + + + ++ F + +E CL+Q K+++NR RD+ Sbjct: 58 QEVDKTALL-----QIMFGEPVE-----CLKQLKETLPSWDKVYFNRDETGYGAERDEAA 107 Query: 124 EKRLQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAI 182 + + I ++F DS L + + YK++TP+ K + +++ P Sbjct: 108 KTFFDEQEIEVQAFHDSYLHSAEEVKKSPTEYYKIFTPYYKKW-----REEIKETPFKVT 162 Query: 183 RLTGPVTPSNIPRFFDYPFQAIDPMFPI---GEQNALHILRKFCKEKVYYYVEQRDIPAI 239 + N+ ++ F + PI GE+ A L F K V Y + RD P + Sbjct: 163 LKADNIRKENLFPKYEEQFAEMTCDLPILDSGEKTANTRLANFIKHDVADYDKARDFPEL 222 Query: 240 QGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYP 299 TS LS YL G +S R W L+E + G + EL WR+FY + +P Sbjct: 223 DKTSHLSRYLRTGEISVRTIWQALQEN------EATEGRAIFEKELCWRDFYNMIYVSFP 276 Query: 300 SVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITAS 359 + +P IEW + +AW+ G TGFP++DAAMRQL GWMHNRLRM+TAS Sbjct: 277 NQ-KNEPIQENYRFIEWENNREFFKAWQDGKTGFPLVDAAMRQLKETGWMHNRLRMVTAS 335 Query: 360 FLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFD 419 FL KDLL+DWR GE+YF L+D D ASN GGWQWAASTG D+VPYFRIFNPT Q ++FD Sbjct: 336 FLTKDLLIDWRFGEKYFQQMLIDYDSASNIGGWQWAASTGTDAVPYFRIFNPTTQSQKFD 395 Query: 420 PQGTFIRHWLPELNNVPTQYIHAPH--SWLDKND----LSLNYPLPIVDHKKACHHTLNQ 473 P G FIR ++ EL N+P ++IH P S +++ + L +YP PIVDHK+ + + Sbjct: 396 PTGKFIREYVKELANLPDKFIHQPEKMSEIEQKEHGLLLGKDYPFPIVDHKERRKLAIAR 455 Query: 474 YYAAKK 479 Y +K+ Sbjct: 456 YEFSKE 461 >gi|325568101|ref|ZP_08144542.1| deoxyribodipyrimidine photolyase [Enterococcus casseliflavus ATCC 12755] gi|325158302|gb|EGC70453.1| deoxyribodipyrimidine photolyase [Enterococcus casseliflavus ATCC 12755] Length = 473 Score = 291 bits (746), Expect = 1e-76, Method: Compositional matrix adjust. Identities = 173/491 (35%), Positives = 264/491 (53%), Gaps = 46/491 (9%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHN--SDAKVIAVFIATPEQWRQHGISARQSHFIYAS 64 M++H++W R DLR+ DN AL A + ++ +++ VF +Q+ A + +++ Sbjct: 1 MAIHVMWFRKDLRLEDNTALTEALLSLQANDQLLCVFHLNEKQFLP---DAPSHDYFFSA 57 Query: 65 LLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLE 124 + +++ ++ + ++ + L + ++L++N +RD ++ Sbjct: 58 VAHFIEAVKKQNLTIHL-LTGTLTEAFDQL--FACYPEWSQLYFNFDNRGYGRKRDLYIK 114 Query: 125 KRLQHR-VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIR 183 + ++ + V SF++ L P + YK +TP+ K IQ LP P + Sbjct: 115 ELVEKKGVTVHSFEEHHLHQPTEVTKEDGTYYKKFTPYYKKWIQ---------LPKPVYQ 165 Query: 184 LTGPVTPSNIPRFFDYP-FQAIDPMFP-------------IGEQNALHILRKFCKEKVYY 229 + F D P F+A + +GE A L+ F ++++ Sbjct: 166 KQA-LDFEKAAHFNDAPHFKAGTALLAEVLNNRKTDFSTIVGEDYAHKQLQAFVQKRLAA 224 Query: 230 YVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWRE 289 Y + RD+P+I+GTS+LSP+LS G +S R+ W + + P +G ++L EL WR+ Sbjct: 225 YEKDRDLPSIKGTSRLSPFLSFGQISIRKVWAACQG------MPPSTGKATFLKELAWRD 278 Query: 290 FYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWM 349 FY H++ F I ++W KD W+ G TG+PIIDAAMRQLN GWM Sbjct: 279 FY-HMIYFTHPEQKNYELIEKYRNMDWQKDEEAFNKWQAGQTGYPIIDAAMRQLNQTGWM 337 Query: 350 HNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIF 409 HNRLRMI ASFL KDLL+DWR GE YF QL+D D ASN GGWQWAASTG D+VPYFRIF Sbjct: 338 HNRLRMIVASFLTKDLLIDWRQGEAYFARQLIDYDAASNIGGWQWAASTGTDAVPYFRIF 397 Query: 410 NPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND------LSLNYPLPIVDH 463 NP QGK+FD +GT+I+ ++PEL +P ++IH P+ D+ L +YPLPIVDH Sbjct: 398 NPITQGKKFDKEGTYIKQFVPELAQLPLKFIHEPYLMTDEEQADLKVVLGTDYPLPIVDH 457 Query: 464 KKACHHTLNQY 474 +A L+ Y Sbjct: 458 NEARKRALDLY 468 >gi|320160751|ref|YP_004173975.1| deoxyribodipyrimidine photolyase [Anaerolinea thermophila UNI-1] gi|319994604|dbj|BAJ63375.1| deoxyribodipyrimidine photolyase [Anaerolinea thermophila UNI-1] Length = 466 Score = 291 bits (746), Expect = 1e-76, Method: Compositional matrix adjust. Identities = 178/492 (36%), Positives = 256/492 (52%), Gaps = 45/492 (9%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M+ L W+R DLR+ D+ AL A +VI VFI ++ ++++ F+++ L Sbjct: 1 MTTILWWIRRDLRLHDHPALEYALQK--GRVIPVFILDDRLLQKE--ASKRKQFLFSGLR 56 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 Q+ + L ++G + + L + ++ Y RRD + + Sbjct: 57 QLDEDLRKRGSQLIIRRGEPLAE----LTRLIQETGAEEIVALEDYSPYARRRDSHIARE 112 Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 L + F + PP +L Y V+TPF +A ++LP Sbjct: 113 LPLHL----FAGETVYPPSLVLKPDGSPYTVFTPFSRAW---------KALP-----FAS 154 Query: 187 PVTPSNIPRFFDYPFQAID-PM--------FPIGEQNALHILRKFCKEKVYYYVEQRDIP 237 P S RF P + + P+ FP GE AL L F Y + R+ Sbjct: 155 PSVVSLPERFPAVPDKLVSLPIPEAIFLQDFPPGELEALRRLENFLSGPAREYADGRNRL 214 Query: 238 AIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKP--KSGAFSWLNELIWREFYRHLM 295 GTS LSPY G+LSPR ++++ + + P K G +WLNELIWREFY ++ Sbjct: 215 DQPGTSFLSPYFRFGMLSPRWAVFQVRK-MIQITSSPDEKRGYEAWLNELIWREFYISIL 273 Query: 296 AFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRM 355 YP V + F P IEW LQAWK+G TG+P++DAAMRQL GWMHNR RM Sbjct: 274 YHYPHV-LAMAFNPALRAIEWRDAPSELQAWKEGKTGYPVVDAAMRQLKATGWMHNRARM 332 Query: 356 ITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQG 415 I ASFL KDLL++W+ GE++FM L+DGD A+NNGGWQW A G D+ PYFRIFNP +Q Sbjct: 333 IVASFLTKDLLINWQEGEQWFMQNLVDGDPAANNGGWQWTAGVGTDAAPYFRIFNPVLQS 392 Query: 416 KRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSL------NYPLPIVDHKKACHH 469 +FDPQG +I+ W+PEL +VPT++IHAP + +SL +YP P+VDH++ Sbjct: 393 AKFDPQGRYIKTWVPELTSVPTEFIHAPWTMPLSLQISLGVRIGRDYPTPMVDHQEVRGR 452 Query: 470 TLNQYYAAKKQS 481 L Y ++ ++ Sbjct: 453 VLEAYRTSQGKT 464 >gi|289208005|ref|YP_003460071.1| deoxyribodipyrimidine photo-lyase [Thioalkalivibrio sp. K90mix] gi|288943636|gb|ADC71335.1| Deoxyribodipyrimidine photo-lyase [Thioalkalivibrio sp. K90mix] Length = 469 Score = 291 bits (746), Expect = 1e-76, Method: Compositional matrix adjust. Identities = 177/479 (36%), Positives = 253/479 (52%), Gaps = 25/479 (5%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 LVWLR DLR+ D AL+AA A VI VFI P++ Q A + +++ SL + + Sbjct: 6 LVWLRQDLRLADQPALHAAVERGGA-VIPVFIHAPDEDLQWPPGAASNWWLHHSLQSLNE 64 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130 +L++ G + D L + T +++NR YE V RD+ ++ L+ Sbjct: 65 ALNKAGSPLVVRAGPSLDT----LRELVAETGATAVYWNRVYEPARVLRDQGIKAGLRAD 120 Query: 131 VI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189 + +SF+ ++L+ P + Y+V+TPF +A +Q ++ + LP P+ RL P Sbjct: 121 GLDVRSFNAALLIEPWDVETGQGGPYRVFTPFWRACLQRGIEQN--PLPAPS-RLPAPGK 177 Query: 190 PSNIPRFFDYPF-------QAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGT 242 P D + + GE+ A L +F ++ + Y + RD P GT Sbjct: 178 PPRSLMLDDLELLPPIDWAGGLRATWTPGERGARDRLERFLEQAIAGYADSRDRPDQDGT 237 Query: 243 SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVC 302 S+LSP+L G +SPRQ L++ V L K G S++ EL WR+F H++ +P Sbjct: 238 SRLSPHLHFGEVSPRQVLRALRDAGVSLDHK---GPESFVRELGWRDFAHHVLYHFPHTT 294 Query: 303 MGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLV 362 +P P E W + L AW+QG TG PI+DAAMRQL GWMHNRLRM+ SFL Sbjct: 295 E-QPLNPRFEDFPWRESEADLAAWQQGRTGIPIVDAAMRQLWETGWMHNRLRMVVGSFLT 353 Query: 363 KDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQG 422 K+L + W G +F L+D DLASN GWQWA G D+ PYFRIFNP QG+++DP G Sbjct: 354 KNLRLHWGHGARWFWDTLVDADLASNTLGWQWAGGCGADAAPYFRIFNPQRQGEQYDPDG 413 Query: 423 TFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481 F+R +LP L T+YIHAP + + YP PIVD K + L + A KK S Sbjct: 414 RFVRSFLPVLKKTETRYIHAPGA-----GGTPGYPDPIVDLKASRQAALEAFEAIKKTS 467 >gi|186473227|ref|YP_001860569.1| deoxyribodipyrimidine photo-lyase [Burkholderia phymatum STM815] gi|184195559|gb|ACC73523.1| Deoxyribodipyrimidine photo-lyase [Burkholderia phymatum STM815] Length = 504 Score = 291 bits (745), Expect = 2e-76, Method: Compositional matrix adjust. Identities = 188/504 (37%), Positives = 270/504 (53%), Gaps = 60/504 (11%) Query: 11 LVWLRNDLRITDNKALYAACHNS---------DAKVIAVFIATPEQWRQHGISARQS--H 59 LVW R DLR DN ALY A + D ++ I + H + + Sbjct: 15 LVWFRRDLRTGDNAALYYALRHCERVWCAFVFDTTILQPLINWAHRRNAHAGKVQDARIE 74 Query: 60 FIYASLLQVQKSLSQKG---IVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINE 116 FI AS+ ++ +SL + G IV D ++ + Q V +F N YE + Sbjct: 75 FILASVEELDRSLEEGGGALIVLH-------GDPVDAIPKLAAQLPVDAVFTNHDYEPSA 127 Query: 117 VRRDKLLEKRLQ---HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQAD 173 + RD+ + RL+ R++ +F D V+ +LN + + V+TP++ A ++ L D Sbjct: 128 IERDETVADRLRADGRRLL--TFKDQVIFERDELLNGQRKPFAVFTPYKNAWLKQLTPFD 185 Query: 174 LRSLPVPAIRLTGPVTPSNIPRFFDY-----------PFQAIDPMFPIGEQNALHILRKF 222 L+ P P R + + + PR D+ P + + G A L F Sbjct: 186 LK--PYPVERYSQSL--ARPPRTLDHAWPTLAKMGFAPGKLAETELQAGMSGAQARLEDF 241 Query: 223 CKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKS-GAFSW 281 ++ Y E+RD+PA +GTS LS +L G +S R RL E + ++P GA +W Sbjct: 242 LT-RIDSYAERRDLPAARGTSHLSVHLRFGTVSIRTL-ARLAHE---MSLRPGGQGAATW 296 Query: 282 LNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEW--NKDSH-LLQAWKQGYTGFPIIDA 338 L+ELIWR+FY ++A +P + + F + + W KD+ L AW G TG+P++DA Sbjct: 297 LSELIWRDFYFMILAHHPHIAKRESFKREFDALRWETGKDADALFAAWCDGRTGYPLVDA 356 Query: 339 AMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAAST 398 AM QLN G+MHNRLRM+TASFLVKDL +DWR GE YF +L D D ++NNGGWQWAAST Sbjct: 357 AMLQLNRTGFMHNRLRMVTASFLVKDLGIDWRRGERYFEEKLNDFDFSANNGGWQWAAST 416 Query: 399 GNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSW-LDKND------ 451 G D+ P+FRIFNP Q ++FD QG FI+ +LPEL VP ++IHAP W D +D Sbjct: 417 GCDAQPWFRIFNPVTQSEKFDSQGLFIKRFLPELGKVPAKWIHAP--WQADPDDLEDWGV 474 Query: 452 -LSLNYPLPIVDHKKACHHTLNQY 474 L +YP P+V+H KA TL +Y Sbjct: 475 VLGKDYPHPVVEHAKARQQTLARY 498 >gi|328860259|gb|EGG09365.1| hypothetical protein MELLADRAFT_34389 [Melampsora larici-populina 98AG31] Length = 578 Score = 291 bits (745), Expect = 2e-76, Method: Compositional matrix adjust. Identities = 180/494 (36%), Positives = 265/494 (53%), Gaps = 34/494 (6%) Query: 13 WLR-NDLRITDNKALYAACHNSD---AKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 W+R DLR+ DN+AL AA + A +I + I +P + H SAR+ F+ +L+ + Sbjct: 70 WMRMRDLRLADNRALSAASQVAQTLQAHLIVLHIFSPGDYHAHDRSARRIDFVLRNLIDL 129 Query: 69 QKSLSQKGIVFQYHQCSNFDD----SIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLE 124 + L + I +E L+++ VT++F N ++E++E+RRD L Sbjct: 130 RLRLRELNIPLYTISIEKRKTIPKRVVELLNAW----EVTRIFANIEHEVDELRRDIELI 185 Query: 125 KRLQHRVICKSFD-DSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSL--PVPA 181 + I D+ L+ PG +L + Y V++P++K N++ +DL + P Sbjct: 186 NLCHPQGIKVDLSHDTCLVEPGKVLTKENKPYSVFSPWQKNW-ANIINSDLSNHLDAAPE 244 Query: 182 IRLTGP--VTPSNIPRFFDYPFQAIDPMFPIGEQNALHILR--------KFCKEKVYYYV 231 I+ P + + F+ + P F + ++ A I K + Y Sbjct: 245 IKGNDPSAMDDDRLQSLFEVEIPSFIPGFELPDEEAKRIRDYWEADTKPKSTPTILEEYS 304 Query: 232 EQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPK-------SGAFSWLNE 284 R+ P + GTS+LS YL+ G++SPR C E+ K +G W +E Sbjct: 305 TLRNRPDLPGTSRLSAYLAAGIISPRTCVRITLEKNGKQFKNQKLQVDQRDTGIGMWQSE 364 Query: 285 LIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLN 344 L WR+FY+H++A +P V MG+ F + + W KD L+AWK G TGFP IDA MRQL Sbjct: 365 LGWRDFYQHVLAAWPRVSMGQNFNQKFDPMVWEKDESKLEAWKLGKTGFPFIDACMRQLL 424 Query: 345 TIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVP 404 +G+MHNR RM A FL KDLL+DWRIGE++FM L+DGDL SNNGGWQW++STG DS P Sbjct: 425 EMGYMHNRGRMCVAMFLTKDLLIDWRIGEKWFMQHLVDGDLGSNNGGWQWSSSTGCDSQP 484 Query: 405 YFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDL-SLNYPLPIVDH 463 YFRIF P Q ++ DP G FIR ++PELN++ + IH P+ L + L YP PIVDH Sbjct: 485 YFRIFAPLSQSEKSDPNGDFIRKYVPELNSLSGKAIHDPYKALSPDKFKKLGYPKPIVDH 544 Query: 464 KKACHHTLNQYYAA 477 L +Y + Sbjct: 545 SVVRKRALVRYKVS 558 >gi|163793481|ref|ZP_02187456.1| Deoxyribodipyrimidine photolyase [alpha proteobacterium BAL199] gi|159181283|gb|EDP65798.1| Deoxyribodipyrimidine photolyase [alpha proteobacterium BAL199] Length = 484 Score = 291 bits (745), Expect = 2e-76, Method: Compositional matrix adjust. Identities = 173/487 (35%), Positives = 252/487 (51%), Gaps = 30/487 (6%) Query: 3 ATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIY 62 A + S L+W R DLR+ DN AL AA V+AV+I E +++ Sbjct: 7 AMSNASPTLLWFRRDLRLADNPALTAAVRRGR-PVVAVYILDDEDAGDWASGGASRWWLH 65 Query: 63 ASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKL 122 SL ++ +SL +G + + + LD + +++NR YE RD+ Sbjct: 66 HSLERLAESLRGRGSRLILRRGA----AAAVLDRLISETGAEAVYWNRCYEPWATARDQA 121 Query: 123 LEKRLQHRV-ICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPA 181 ++ L+ R +SF+ S+L P I + Y+V+TPF KAL DL LP P Sbjct: 122 IKASLRLRGHEVRSFNASLLREPWEIASKVGGPYRVFTPFWKALRAMGDPGDL--LPTPD 179 Query: 182 IRLTGPVTPSN--------IPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQ 233 T V P++ P D+ F + + GE A L F Y ++ Sbjct: 180 RIPTLEVAPASDDIDAWALTPSKPDWAF-GLRAAWKPGEAAARQRLEAFLDGAAPEYAKR 238 Query: 234 RDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRH 293 R+ P GTS+LSP+L G + PRQ W+ + +L+E+ WREF H Sbjct: 239 RNFPGTNGTSRLSPHLHFGEIGPRQIWHAASFHHTGMATD------QFLSEIAWREFSHH 292 Query: 294 LMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRL 353 L+ +P + P P +W+ D L AW+ G TG+PI+DA MR+L GWMHNR+ Sbjct: 293 LLFHFPMLPT-TPLRPEFADFQWSDDPGALAAWRHGMTGYPIVDAGMRELWATGWMHNRV 351 Query: 354 RMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTI 413 RMI ASFLVKDLL+ W++G +F L+D DLASN+ WQW A G+D+ P+FR+FNP++ Sbjct: 352 RMIVASFLVKDLLLPWQVGARWFWDTLVDADLASNSASWQWVAGCGSDAAPFFRVFNPSL 411 Query: 414 QGKRFDPQGTFIRHWLPELNNVPTQYIHAPHS--WLDKND----LSLNYPLPIVDHKKAC 467 QG +FDPQGT++R W+PE+ +P IH P +D +D L +YPLPI+DH+ A Sbjct: 412 QGAKFDPQGTYVRRWVPEIAGLPDSIIHKPSDARLIDLSDAGIRLGHDYPLPIIDHRAAR 471 Query: 468 HHTLNQY 474 L + Sbjct: 472 DRALTAF 478 >gi|47096881|ref|ZP_00234460.1| deoxyribodipyrimidine photolyase [Listeria monocytogenes str. 1/2a F6854] gi|254900179|ref|ZP_05260103.1| hypothetical protein LmonJ_10210 [Listeria monocytogenes J0161] gi|254911267|ref|ZP_05261279.1| deoxyribodipyrimidine photolyase [Listeria monocytogenes J2818] gi|254935594|ref|ZP_05267291.1| deoxyribodipyrimidine photolyase [Listeria monocytogenes F6900] gi|47014746|gb|EAL05700.1| deoxyribodipyrimidine photolyase [Listeria monocytogenes str. 1/2a F6854] gi|258608175|gb|EEW20783.1| deoxyribodipyrimidine photolyase [Listeria monocytogenes F6900] gi|293589198|gb|EFF97532.1| deoxyribodipyrimidine photolyase [Listeria monocytogenes J2818] Length = 467 Score = 291 bits (745), Expect = 2e-76, Method: Compositional matrix adjust. Identities = 174/486 (35%), Positives = 256/486 (52%), Gaps = 45/486 (9%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSH-FIYASLLQVQ 69 ++W R DLR++DNKALY AC D ++ +F P Q+ I+ SH +AS+ + Sbjct: 4 VMWFRRDLRVSDNKALYHACKEDD--LLLLFQVNPAQF----ITGSPSHQAFFASVAHFK 57 Query: 70 KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVT------KLFYNRQYEINEVRRDKLL 123 + + + ++ F + +E CL+Q K+++NR RD+ Sbjct: 58 QEVDKTALL-----QIMFGEPVE-----CLKQLKETLPSWDKVYFNRDETGYGAERDEAA 107 Query: 124 EKRLQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAI 182 + + I ++F DS L + + YK++TP+ K + +++ P Sbjct: 108 KTFFDEQEIEVQAFHDSYLHSAEEVKKSPTEYYKIFTPYYKKW-----REEIKETPFKVT 162 Query: 183 RLTGPVTPSNIPRFFDYPFQAIDPMFPI---GEQNALHILRKFCKEKVYYYVEQRDIPAI 239 + N+ ++ F + PI GE+ A L F K V Y + RD P + Sbjct: 163 LKADNIRKENLFPKYEEQFAEMTCDLPILDSGEKTANTRLANFIKHDVADYDKARDFPEL 222 Query: 240 QGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYP 299 TS LS YL G +S R W L+E + G + EL WR+FY + +P Sbjct: 223 DKTSHLSRYLRTGEISVRTIWQALQEN------EATEGRAIFEKELCWRDFYNMIYVSFP 276 Query: 300 SVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITAS 359 + +P IEW + +AW+ G TGFP++DAAMRQL GWMHNRLRM+TAS Sbjct: 277 NQ-KNEPIQENYRFIEWENNREFFKAWQDGKTGFPLVDAAMRQLKETGWMHNRLRMVTAS 335 Query: 360 FLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFD 419 FL KDLL+DWR GE+YF L+D D ASN GGWQWAASTG D+VPYFRIFNPT Q ++FD Sbjct: 336 FLTKDLLIDWRFGEKYFQQMLIDYDPASNIGGWQWAASTGTDAVPYFRIFNPTTQSQKFD 395 Query: 420 PQGTFIRHWLPELNNVPTQYIHAPH--SWLDKNDLSL----NYPLPIVDHKKACHHTLNQ 473 P G FIR ++ EL N+P +YIH P S +++ + L +YP P++DHK+ + + Sbjct: 396 PTGKFIRKYVKELANLPDKYIHQPEKMSEIEQKEYGLLLGKDYPFPLIDHKERRKLAIAR 455 Query: 474 YYAAKK 479 Y +K+ Sbjct: 456 YEFSKE 461 >gi|116251748|ref|YP_767586.1| deoxyribodipyrimidine photo-lyase [Rhizobium leguminosarum bv. viciae 3841] gi|115256396|emb|CAK07478.1| putative deoxyribodipyrimidine photo-lyase [Rhizobium leguminosarum bv. viciae 3841] Length = 483 Score = 291 bits (745), Expect = 2e-76, Method: Compositional matrix adjust. Identities = 173/499 (34%), Positives = 268/499 (53%), Gaps = 37/499 (7%) Query: 3 ATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIY 62 A A ++W R DLR+ DN+AL AA H S +I ++I P + A Q+ +++ Sbjct: 2 AKDAAKPVILWFRKDLRLDDNQALTAA-HRSGRPIIPLYIGEPAAAGTGPLGAAQAWWLH 60 Query: 63 ASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKL 122 SL + +SL ++ +++E L ++ + +F+NR+Y+ + D Sbjct: 61 HSLEALNRSLQKR----HGRLVLASGEALEVLRAFIKESGAEAVFWNRRYDPAGISIDAR 116 Query: 123 LEKRLQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPA 181 ++ L+ + I +SF +L P ++ Y+VYTPF +AL D P+ A Sbjct: 117 IKHELEKQAIEARSFGGQLLHEPSRLMTGNGTPYRVYTPFWRAL----EGGDEPEPPLEA 172 Query: 182 ---IRLTGPVTPSN-------IPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYV 231 +RLT + S +P D+ +D P GE+ A L F ++ + Y Sbjct: 173 PAELRLTSQLPTSETLESWKLLPTKPDWAGDFVDLWTP-GEEGAQQRLHAFVEDALEGYK 231 Query: 232 EQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFY 291 E RD PA TS LSP+L++G +SP + W+ + + P + + E+ WREF Sbjct: 232 ENRDYPARPATSMLSPHLALGEISPARIWDATRGLSQRV---PAADIVHFRKEIAWREFS 288 Query: 292 RHLMAFYPSVCMGKPFIPWTEK---IEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGW 348 HL+ +P + W ++ +EW DS +AW++G TG+PI+DA MRQL GW Sbjct: 289 YHLLFHFPRLASAN----WNDRFDGLEWCNDSDDFEAWRRGMTGYPIVDAGMRQLWRHGW 344 Query: 349 MHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRI 408 MHNR+RMI ASFL+KDL++DWR GE +F L+D D A+N WQW A +G D+ P+FRI Sbjct: 345 MHNRVRMIVASFLIKDLMIDWRRGEAWFRDTLVDADPANNAASWQWVAGSGADASPFFRI 404 Query: 409 FNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIH----APHSWLDKNDLSLN--YPLPIVD 462 FNP +QG++FDP G +++ ++PEL + +YIH AP S LD+ ++L YP PIVD Sbjct: 405 FNPVLQGEKFDPNGDYVKTYVPELRELGAKYIHRPFEAPKSMLDEAGITLGQTYPRPIVD 464 Query: 463 HKKACHHTLNQYYAAKKQS 481 H A + L Y A + + Sbjct: 465 HASARNRALAAYSATRDAA 483 >gi|329904543|ref|ZP_08273850.1| Deoxyribodipyrimidine photolyase [Oxalobacteraceae bacterium IMCC9480] gi|327547937|gb|EGF32686.1| Deoxyribodipyrimidine photolyase [Oxalobacteraceae bacterium IMCC9480] Length = 504 Score = 290 bits (743), Expect = 3e-76, Method: Compositional matrix adjust. Identities = 177/493 (35%), Positives = 259/493 (52%), Gaps = 32/493 (6%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 L+W R DLR+ D AL+ A S V VFI + + R+ F++ASL ++ + Sbjct: 15 LIWFRRDLRVFDQAALHHALRQSRT-VFCVFIFDSDILQHLPEQDRRIEFLHASLTELHE 73 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ-H 129 L + G ++E + + + V +F N YE + RD + LQ H Sbjct: 74 ELVKLGGALIVRHAR----AVEAIPALARELDVEAVFINHDYEPQAIARDAAIATALQQH 129 Query: 130 RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNL----VQADLRSLPVPAIRLT 185 + S D V+ +L+ A + + V+TP++ A ++ L +R+ PV + Sbjct: 130 DIALHSSKDQVVFENDEVLSLAGKPFSVFTPYKNAWLKQLQFNSSDVHVRAYPVEPLADR 189 Query: 186 GPVTPSN--IPRFFDYPFQAID---PMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ 240 V+P +P + F + P G ++ F E++ Y + RD PAI+ Sbjct: 190 FAVSPVAHVMPTLAELGFAPTNFAQLKIPTGMSGGQQLVDNFM-ERIDKYKQTRDFPAIK 248 Query: 241 GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPS 300 G S LS +L G +S R R E + SGA +WL EL+WR+FY ++ +P Sbjct: 249 GPSYLSVHLRFGTVSIRHLARRACE--AARIAADASGANTWLAELVWRDFYFMILQHHPR 306 Query: 301 VCMGKPFIPWTEKIEWNKD---SHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMIT 357 V G F P + I+W L QAW G TG+P++DAAM Q+N G+MHNRLRM+T Sbjct: 307 VVHGA-FKPDYDAIQWETGPAADALFQAWCDGRTGYPLVDAAMAQINQTGYMHNRLRMVT 365 Query: 358 ASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKR 417 A FL+KDL +DWR GE YF +L+D DL++NNGGWQWA+S+G D+ PYFRIFNP Q ++ Sbjct: 366 ACFLIKDLGIDWRRGEAYFAEKLIDFDLSANNGGWQWASSSGCDAQPYFRIFNPITQSEK 425 Query: 418 FDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKN--------DLSLNYPLPIVDHKKACHH 469 FD G FIR +LP+L + + IHAP WL +L +NYPLP+V H A Sbjct: 426 FDTDGRFIRRYLPQLAQLGNKQIHAP--WLLTKMELDHAGVELGVNYPLPVVQHDVARKQ 483 Query: 470 TLNQYYAAKKQSL 482 TL +Y KK ++ Sbjct: 484 TLARYAVVKKVAV 496 >gi|170691102|ref|ZP_02882268.1| Deoxyribodipyrimidine photo-lyase [Burkholderia graminis C4D1M] gi|170144351|gb|EDT12513.1| Deoxyribodipyrimidine photo-lyase [Burkholderia graminis C4D1M] Length = 493 Score = 290 bits (743), Expect = 3e-76, Method: Compositional matrix adjust. Identities = 189/498 (37%), Positives = 264/498 (53%), Gaps = 49/498 (9%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPE---------QWRQHGISA--RQSH 59 LVW R DLR TD+ ALY A + + +V VF+ Q R G A R+ Sbjct: 9 LVWFRRDLRTTDHAALYHALKHCE-RVWCVFVFDTTILQPLIDTWQARHPGAPAQDRRVE 67 Query: 60 FIYASLLQVQKSLSQKG---IVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINE 116 FI ASL ++ +L +G IV + D + + + RV +F N YE Sbjct: 68 FILASLRELDDALRAQGGGLIVL-------YGDPADLVPKLADELRVDAVFANHDYEPAA 120 Query: 117 VRRDKLLEKRL-QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLR 175 + RD+ + +RL + C +F D V+ +L + + V+TP++ A ++ L L+ Sbjct: 121 IERDETVRERLAEAGRACLTFKDQVIFERAELLTGQNKPFTVFTPYKNAWLKQLTSFYLK 180 Query: 176 SLPVP--AIRLTG--PVTPSNIPRFFDY---PFQAIDPMFPIGEQNALHILRKFCKEKVY 228 PV A RL P +P P + P G A +L F ++ Sbjct: 181 PYPVETYANRLAALPPGLNRQLPTLEQLGFAPGNLAELDLPTGMSGAQRLLDDFVT-RIA 239 Query: 229 YYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKS-GAFSWLNELIW 287 Y E+RD PA +G S LS +L G +S R RL E + ++P GA +WL+ELIW Sbjct: 240 SYAERRDFPAARGPSYLSVHLRFGTVSIRTL-ARLAHE---ISLQPDGRGAATWLSELIW 295 Query: 288 REFYRHLMAFYPSVCMGKPFIPWTEKIEWNKD---SHLLQAWKQGYTGFPIIDAAMRQLN 344 R+FY +++ +P + G F + + W + AW +G TG+P+IDAAM QLN Sbjct: 296 RDFYFMILSHHPRLASGASFKQEYDALRWEQGPAADAAFAAWCEGRTGYPLIDAAMLQLN 355 Query: 345 TIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVP 404 G+MHNRLRM+TASFLVKDL +DWR GE YF QL D DLA+NNGGWQWAASTG D+ P Sbjct: 356 RTGYMHNRLRMVTASFLVKDLGIDWRRGERYFADQLNDYDLAANNGGWQWAASTGCDAQP 415 Query: 405 YFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND--------LSLNY 456 YFRIFNP Q ++FD G FI+ +LP+L +P +++HAP WL L +Y Sbjct: 416 YFRIFNPITQSEKFDADGRFIKRYLPQLAKLPAKWVHAP--WLAGAQKLAAFGVVLGEDY 473 Query: 457 PLPIVDHKKACHHTLNQY 474 P PIVDH +A TL ++ Sbjct: 474 PQPIVDHAQARARTLARF 491 >gi|323137318|ref|ZP_08072396.1| DNA photolyase, FAD-binding [Methylocystis sp. ATCC 49242] gi|322397305|gb|EFX99828.1| DNA photolyase, FAD-binding [Methylocystis sp. ATCC 49242] Length = 472 Score = 290 bits (743), Expect = 3e-76, Method: Compositional matrix adjust. Identities = 171/487 (35%), Positives = 265/487 (54%), Gaps = 40/487 (8%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 +VW RNDLR+ DN AL AA S A +IA+++ E + + + +++ SL + Sbjct: 6 VVWFRNDLRLADNPALTAAAR-SGAPIIALYVLDDESAGEWRMGSASRWWLHHSLTALAH 64 Query: 71 SLSQKGIVFQYHQC-SNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH 129 L++ G+ + + F L++ +++NR YE +RRD ++ +L+ Sbjct: 65 DLARLGVTLTLRRGRAEFV-----LENIVADAGAGAVYWNRLYEPWAMRRDSEIKSQLRA 119 Query: 130 R-VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188 R V+ +SF+ S+L PG + N + ++V+TPF +A + A+ P+PA + Sbjct: 120 RGVMVESFNGSLLFEPGGLRNKQGEPFRVFTPFWRACLA----AEAPDAPLPAPKKLTAA 175 Query: 189 TPSNIPRFFDYPFQAIDP--------MFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ 240 P D+ P + GE AL L +F K++V Y RD A + Sbjct: 176 PPPASDALADWRLLPTKPDWAGGLRETWRAGEHAALERLAEFAKKRVRDYKIDRDFMARE 235 Query: 241 GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPS 300 G S++SP+L G +SPR+ W + E D +GA ++L E+ WREF HL+ P Sbjct: 236 GVSRMSPHLHFGEVSPRRIWAEITEAAGD------AGA-AYLREIGWREFCHHLLVANPQ 288 Query: 301 V---CMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMIT 357 + + + F W +D+ L+AW++G TG+P++DAAMR+L G MHNR RM+ Sbjct: 289 MPERALDERF----RDFPWREDAAALEAWRRGQTGYPLVDAAMRELWITGNMHNRARMVA 344 Query: 358 ASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKR 417 ASFLVK LL+ W+ GE +F L+D DLA+N+GGWQW A G D+ PYFR+FNP +QG++ Sbjct: 345 ASFLVKHLLIPWQEGERWFWDTLVDADLANNSGGWQWVAGCGADAAPYFRVFNPVLQGEK 404 Query: 418 FDPQGTFIRHWLPELNNVPTQYIH----APHSWLDKNDLSLN--YPLPIVDHKKACHHTL 471 FDP+G ++R ++PEL + ++IH AP L + L YP PIVDH KA L Sbjct: 405 FDPEGDYLRRYVPELARLDARHIHCPWEAPEEVLRAAGVRLGETYPRPIVDHAKARDRAL 464 Query: 472 NQYYAAK 478 + A + Sbjct: 465 KAFEATR 471 >gi|16802631|ref|NP_464116.1| hypothetical protein lmo0588 [Listeria monocytogenes EGD-e] gi|224502111|ref|ZP_03670418.1| hypothetical protein LmonFR_06272 [Listeria monocytogenes FSL R2-561] gi|16409964|emb|CAC98667.1| lmo0588 [Listeria monocytogenes EGD-e] Length = 467 Score = 290 bits (742), Expect = 4e-76, Method: Compositional matrix adjust. Identities = 173/486 (35%), Positives = 256/486 (52%), Gaps = 45/486 (9%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSH-FIYASLLQVQ 69 ++W R DLR+ DNKALY AC D ++ +F P Q+ I+ SH +AS+ + Sbjct: 4 VMWFRRDLRVNDNKALYHACKEDD--LLLLFQVNPAQF----ITGSPSHQAFFASVAHFK 57 Query: 70 KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVT------KLFYNRQYEINEVRRDKLL 123 + + + ++ F + +E CL+Q K+++NR RD+ Sbjct: 58 QEVDKTALL-----QIMFGEPVE-----CLKQLKETLPSWDKVYFNRDETGYGAERDEAA 107 Query: 124 EKRLQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAI 182 + + I ++F DS L + + YK++TP+ K + +++ P Sbjct: 108 KTFFDEQEIEVQAFHDSYLHSAEEVKKSPTEYYKIFTPYYKKW-----REEIKETPFKVT 162 Query: 183 RLTGPVTPSNIPRFFDYPFQAIDPMFPI---GEQNALHILRKFCKEKVYYYVEQRDIPAI 239 + N+ ++ F + PI GE+ A L F K V Y + RD P + Sbjct: 163 LKADNIRKENLFPKYEEQFAEMTCDLPILDSGEKTANTRLANFIKHDVADYDKARDFPEL 222 Query: 240 QGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYP 299 TS LS YL G +S R W L+E + G + EL WR+FY + +P Sbjct: 223 DKTSHLSRYLRTGEISVRTIWQALQEN------EATEGRAIFEKELCWRDFYNMIYVSFP 276 Query: 300 SVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITAS 359 + +P IEW + +AW++G TGFP++DAAMRQL GWMHNRLRM+TAS Sbjct: 277 NQ-KNEPIQENYRFIEWENNREFFKAWQEGKTGFPLVDAAMRQLKETGWMHNRLRMVTAS 335 Query: 360 FLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFD 419 FL KDLL+DWR GE+YF L+D D ASN GGWQWAASTG D+VPYFRIFNPT Q ++FD Sbjct: 336 FLTKDLLIDWRFGEKYFQQMLIDYDPASNIGGWQWAASTGTDAVPYFRIFNPTTQSQKFD 395 Query: 420 PQGTFIRHWLPELNNVPTQYIHAPH--SWLDKNDLSL----NYPLPIVDHKKACHHTLNQ 473 P G FIR ++ EL N+P ++IH P S +++ + L +YP P++DHK+ + + Sbjct: 396 PTGKFIRKYVKELANLPDKFIHQPEKMSEIEQKEYGLLLGKDYPFPLIDHKERRKLAIAR 455 Query: 474 YYAAKK 479 Y +K+ Sbjct: 456 YEFSKE 461 >gi|172037341|ref|YP_001803842.1| DNA photolyase [Cyanothece sp. ATCC 51142] gi|171698795|gb|ACB51776.1| DNA photolyase [Cyanothece sp. ATCC 51142] Length = 476 Score = 290 bits (742), Expect = 4e-76, Method: Compositional matrix adjust. Identities = 169/471 (35%), Positives = 263/471 (55%), Gaps = 26/471 (5%) Query: 8 SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67 ++ + W R DLR++DN L A S +K++ +F P ++ I+ + +++ L Sbjct: 3 NIIIFWHRRDLRLSDNIGLSKAYQKS-SKLVGLFCLDPNILQRDDIAPARVNYMLGCLRN 61 Query: 68 VQKSLSQKG---IVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLE 124 +Q+S + G ++FQ + + L C+ +N E RDK ++ Sbjct: 62 LQESYQKLGGQLLIFQGQPTKIIPEVAKSLKVNCV-------IWNNDVEPYSKERDKQVK 114 Query: 125 KRLQHR-VICKSFDDSVLLPPGSILNHALQM-YKVYTPFRKALIQ----NLVQA--DLRS 176 + LQ + + +++ D +L PG IL + YKVYTPF ++ ++ N+ ++ L S Sbjct: 115 EALQEKGITSETYWDQLLHAPGEILTKSNNDPYKVYTPFWRSWVKEDKANIAESIEKLDS 174 Query: 177 LPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMF-PIGEQNALHILRKFCKEKVYYYVEQRD 235 L I + ++P D + P+ +GE A L FC +Y Y EQR+ Sbjct: 175 LSDEEINTVKNIGLIDLPTAKDLGYGWDIPLLLELGETAAKEQLHYFCNSTIYSYQEQRN 234 Query: 236 IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLI-KPKSGAFSWLNELIWREFYRHL 294 PAI GTS+LSP GV+ R+ W E + + + + +W E+ WREFY+H Sbjct: 235 FPAIDGTSKLSPAFKFGVIGIREVWQTTIEAYENTRSDEARENIQTWQQEIAWREFYQHC 294 Query: 295 MAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLR 354 + F+P + G P+ + W+ + QAW +G TG+PI+DAAMRQLN GWMHNR R Sbjct: 295 LYFFPELAEG-PYREEFQDFPWDNNEDHFQAWCEGKTGYPIVDAAMRQLNETGWMHNRCR 353 Query: 355 MITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQ 414 MI ASFL KDL+++W+ GE+YFM +L+DGDL++NNGGWQW+AS+G D P RIFNP Q Sbjct: 354 MIVASFLTKDLMINWQWGEKYFMQKLIDGDLSANNGGWQWSASSGMDPKP-LRIFNPASQ 412 Query: 415 GKRFDPQGTFIRHWLPELNNVPTQY-IHAPHSWLDKNDLSLNYPLPIVDHK 464 +++DP G +IR W+PE++++ T+Y + L+ + S YP PIVDHK Sbjct: 413 AQKYDPDGEYIRLWVPEISSLDTEYLVTGKIPPLEAH--SCGYPQPIVDHK 461 >gi|326315673|ref|YP_004233345.1| Deoxyribodipyrimidine photo-lyase [Acidovorax avenae subsp. avenae ATCC 19860] gi|323372509|gb|ADX44778.1| Deoxyribodipyrimidine photo-lyase [Acidovorax avenae subsp. avenae ATCC 19860] Length = 495 Score = 290 bits (742), Expect = 4e-76, Method: Compositional matrix adjust. Identities = 185/508 (36%), Positives = 269/508 (52%), Gaps = 43/508 (8%) Query: 1 MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHF 60 M S LVW R DLR D+ ALY A +V VF+ + + R+ F Sbjct: 1 MIMVPTFSKGLVWFRRDLRSDDHAALYHALRQC-GQVHCVFVFDTDILDPLPRADRRVEF 59 Query: 61 IYASLLQVQKSLS------QKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEI 114 I SL+Q+ SL G++ ++ + E + + ++ V LF N E Sbjct: 60 IRESLVQLDASLRDLSGHRHGGLIVRHGVAA------EEVPALAVRLGVQALFANHDDEP 113 Query: 115 NEVRRDKLLEKRL-QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQAD 173 + RD + RL V ++ D + +L Y V+TP++ A ++ + Sbjct: 114 AALERDDRVRHRLGAGGVQMLTYKDHTVFERAEVLTQGGTPYTVFTPYKNAWLRKVDAFY 173 Query: 174 LRSLPVPAIRLTGPVTP------SNIPRFFDYPFQ--AIDPM-FPIGEQNALHILRKFCK 224 L + PV R G + P ++P D F+ +D + P G + A +L F Sbjct: 174 LSAYPVE--RHAGRLAPRPEGARGSVPALADIGFEPAGLDRLPLPPGMEGARTLLDDFL- 230 Query: 225 EKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNE 284 +++ Y E RD PA++G S LS +L G LSPR+ E + + +GA +WL+E Sbjct: 231 QRIDQYGEARDFPAVKGPSYLSVHLRFGTLSPRRAARAAHER----MRQGSTGAATWLSE 286 Query: 285 LIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQ---AWKQGYTGFPIIDAAMR 341 LIWR+FY ++A +P V G F P + I W + AW +G TG+P++DAAM Sbjct: 287 LIWRDFYFQVLAHHPQVAGGASFKPAYDAIPWEDGPQAQERFAAWCEGRTGYPLVDAAMA 346 Query: 342 QLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGND 401 Q+N G+MHNRLRM+ ASFLVKDL VDWR GE YF +L D DL++NNGGWQWA+S+G D Sbjct: 347 QINQTGYMHNRLRMVVASFLVKDLGVDWRRGERYFAEKLNDFDLSANNGGWQWASSSGCD 406 Query: 402 SVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSW------LDKNDLSL- 454 + PYFRIFNP Q ++FDP+G FIR +LP+L +P +++HAP W L+ + L Sbjct: 407 AQPYFRIFNPVSQSRKFDPKGRFIRLYLPQLAALPDRWLHAP--WEAGPLELEAAGVRLG 464 Query: 455 -NYPLPIVDHKKACHHTLNQYYAAKKQS 481 NYP PIVDH +A TL +Y K ++ Sbjct: 465 DNYPHPIVDHDEARQKTLARYAVVKSEA 492 >gi|257095136|ref|YP_003168777.1| Deoxyribodipyrimidine photo-lyase [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] gi|257047660|gb|ACV36848.1| Deoxyribodipyrimidine photo-lyase [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] Length = 482 Score = 289 bits (740), Expect = 7e-76, Method: Compositional matrix adjust. Identities = 182/494 (36%), Positives = 254/494 (51%), Gaps = 31/494 (6%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISA-RQSHFIYASL 65 M LVW R DLR +D+ AL A +V F+ E A R+ FI SL Sbjct: 1 MDSILVWFRRDLRDSDHAALCEALRRG-RRVFCAFVFDREILDALDHEADRRVEFIRESL 59 Query: 66 LQVQKSLSQKG---IVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKL 122 +++ +L +G +V D L V +F NR YE +RD Sbjct: 60 VELDAALRTRGGALLVRHGWATREIPDLARGLG-------VAAVFVNRDYEPGAKQRDAA 112 Query: 123 LEKRLQHRVIC-KSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPA 181 + L+ I +SF D +L +L+ A + Y V+TP+R A ++ L D + Sbjct: 113 VSAALKADGIAFESFKDQAILDGDEVLSQAGRPYTVFTPYRNAWLKRLTDDDWYPHQAGS 172 Query: 182 IRLTGPVTPSNIPRFFDYPFQAID----PMFPIGEQNALHILRKFCKEKVYYYVEQRDIP 237 L +P F D + P G + +L F ++ Y +QRD P Sbjct: 173 GVLAATPAADGVPPLAKIGFSGTDLRRLGIVP-GMRGGRQLLADFLG-RIGRYRQQRDFP 230 Query: 238 AIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAF 297 A++G S LS +L G +S R K + GA +WL+EL+WR+FY ++ Sbjct: 231 AVKGVSYLSVHLRFGTVSVRDLVA--KAIAAGAFREGGEGAATWLSELVWRDFYFMILDR 288 Query: 298 YPSVCMGKPFIPWTEKIEWNKDSHL---LQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLR 354 +P V + F P + I W + AW G TG+P++DAAMRQLN+ G+MHNRLR Sbjct: 289 FPHVVE-RAFKPAYDLINWQAGAQAEDAFSAWCAGRTGYPLVDAAMRQLNSSGYMHNRLR 347 Query: 355 MITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQ 414 M+ ASFL KDL +DWR+GE YF QL D DL++NNGGWQWAASTG D+ PYFRIFNP Q Sbjct: 348 MLVASFLTKDLGIDWRLGERYFARQLNDYDLSANNGGWQWAASTGCDAQPYFRIFNPVTQ 407 Query: 415 GKRFDPQGTFIRHWLPELNNVPTQYIHAP--HSWLDKNDLSL----NYPLPIVDHKKACH 468 +RFDP G FIR +LPEL NVP ++IHAP S ++++ + P P+VDH +A Sbjct: 408 SERFDPAGKFIRRYLPELANVPDRFIHAPWRMSSVEQSACGVLIGRTTPAPLVDHDQARQ 467 Query: 469 HTLNQYYAAKKQSL 482 TL +Y K ++ Sbjct: 468 RTLERYAIVKSPAV 481 >gi|315301776|ref|ZP_07872823.1| deoxyribodipyrimidine photo-lyase [Listeria ivanovii FSL F6-596] gi|313629850|gb|EFR97936.1| deoxyribodipyrimidine photo-lyase [Listeria ivanovii FSL F6-596] Length = 471 Score = 289 bits (739), Expect = 8e-76, Method: Compositional matrix adjust. Identities = 178/481 (37%), Positives = 260/481 (54%), Gaps = 33/481 (6%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 ++W R DLR++DN ALY AC ++D ++I +F PEQ+ I+ SH + S + K Sbjct: 4 VMWFRRDLRLSDNTALYQACKDND-ELILLFQVNPEQF----ITKSPSHQAFFSSVAYFK 58 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRV---TKLFYNRQYEINEVRRDKL-LEKR 126 K Q F + I L+ L+++V K+++NR +RD+ L Sbjct: 59 QQVDKIAHLQIM----FGEPINLLEK--LKEKVPSWDKVYFNRDETGYGAKRDETALRFF 112 Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 Q + +FDD+ L ++ + YK++TP+ K + + + ++ PA Sbjct: 113 AQAGMTVFAFDDAYLHHADAVKKSTSEFYKIFTPYYKKWREEIKEFPIQVTVNPAKIQKA 172 Query: 187 PVTPSNIPRFFDYPFQAIDPMFP---IGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS 243 + P + +F QA+ PM +GE A + L F KE + Y E RD P + TS Sbjct: 173 ILFPEDEEQFVQMA-QAL-PMLAENMLGETVANNQLNHFVKENLAQYKEVRDFPDLDKTS 230 Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCM 303 LS +L G LS R W +++ +P G ++ EL WR+FY + +P+ Sbjct: 231 HLSRFLRTGELSIRTVWQAVQK------AEPTDGRTTFEKELCWRDFYNMIYVSFPN-QK 283 Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363 + IEW + + Q W+QG TG+P++DAAMRQL GWMHNRLRMITASFL K Sbjct: 284 NEAIQTNYRFIEWENNRNYFQKWQQGATGYPLVDAAMRQLKETGWMHNRLRMITASFLTK 343 Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423 DLL+DWR GE+YF L+D D ASN GGWQWAASTG D+VPYFRIFNPT Q ++FD G Sbjct: 344 DLLIDWRWGEKYFQQMLVDYDPASNIGGWQWAASTGTDAVPYFRIFNPTTQSEKFDSLGN 403 Query: 424 FIRHWLPELNNVPTQYIHAPHSWLDKND------LSLNYPLPIVDHKKACHHTLNQYYAA 477 FIR ++ EL N+P ++IH P K L +YP PI++H++ + +Y + Sbjct: 404 FIRKYVQELANLPDKFIHQPEKMTAKEQTEFKVILGEDYPFPIINHQERRKEAIARYEFS 463 Query: 478 K 478 K Sbjct: 464 K 464 >gi|34498936|ref|NP_903151.1| deoxyribodipyrimidine photo-lyase [Chromobacterium violaceum ATCC 12472] gi|34104785|gb|AAQ61142.1| deoxyribodipyrimidine photo-lyase [Chromobacterium violaceum ATCC 12472] Length = 471 Score = 289 bits (739), Expect = 8e-76, Method: Compositional matrix adjust. Identities = 179/471 (38%), Positives = 251/471 (53%), Gaps = 39/471 (8%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 LVWLR DLR+ D+ A Y A +S+A V+ VF+ R+ FI+ S ++ Sbjct: 9 LVWLRRDLRLDDHAAFYHALKHSEA-VLPVFVFDASILAALPRDDRRVDFIWQSAAALKA 67 Query: 71 SLSQ-KGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL-Q 128 L+Q G + H + + + +F NR YE RD + +RL + Sbjct: 68 ELNQLGGDLLIRHGLPQHE-----IPRLAAELGAEAVFCNRDYEPAARARDAEVAQRLAE 122 Query: 129 HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPA-IRLTGP 187 V + D V+ +L A + + V+TP++ A ++ L L++ PV + P Sbjct: 123 QGVAFRDSKDQVIFETDEVLTGAGKPFSVFTPYKNAWLKKLTPFHLQAYPVRRYLDALMP 182 Query: 188 VTPSNIPRFFDYPFQAID-PMFPI--GEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244 P ++P D F D P+ G A + F ++ Y QRD P ++G S Sbjct: 183 REPQSMPSLADIGFLPSDLASLPVKAGAAGAEALFADFAG-RIERYKAQRDFPGVKGVSY 241 Query: 245 LSPYLSIGVLSPRQ----CWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPS 300 LS +L G LS R+ W+ E GA +WL+ELIWR+FY+ ++ P Sbjct: 242 LSVHLRFGTLSIRRLAAYAWHDGGE-----------GAMTWLSELIWRDFYQQVLWHRPD 290 Query: 301 VCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASF 360 F P + + + D AW++G TG+P++DAAMRQLN G+MHNRLRM+ ASF Sbjct: 291 AAK-HAFKPEYDALPFPNDPEWFDAWREGRTGYPLVDAAMRQLNRSGYMHNRLRMVAASF 349 Query: 361 LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDP 420 LVKDLL+DWR GE+YF +LLD DLA+NNGGWQWAASTG D+ PYFRIFNP Q ++FDP Sbjct: 350 LVKDLLIDWRWGEQYFAEKLLDFDLAANNGGWQWAASTGCDAQPYFRIFNPVSQSEKFDP 409 Query: 421 QGTFIRHWLPELNNVPTQYIHAPHSWLDKND--------LSLNYPLPIVDH 463 G FIR ++PEL +P + IHAP W K + L +YP PIVDH Sbjct: 410 DGRFIRRYVPELAALPDKLIHAP--WQAKPEQLMSAGVRLGRDYPHPIVDH 458 >gi|116617921|ref|YP_818292.1| deoxyribodipyrimidine photo-lyase type I [Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293] gi|116096768|gb|ABJ61919.1| deoxyribodipyrimidine photo-lyase type I [Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293] Length = 470 Score = 289 bits (739), Expect = 8e-76, Method: Compositional matrix adjust. Identities = 184/490 (37%), Positives = 258/490 (52%), Gaps = 44/490 (8%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 V ++W R DLR+ DN AL+ A +S+ +++ VF PEQ + + QS F +AS+L Sbjct: 2 VSVMWFRRDLRLEDNIALFNALRHSN-EILCVFHINPEQVTEKS-TVNQSAF-FASVLYF 58 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTK---LFYNRQYEINEVRRDK---- 121 + L ++GI + +D L+Q++ +F+N RD+ Sbjct: 59 KNKLKKQGINLNI-MYGDINDCFA-----SLKQKLPDWHDIFFNFDERGFGRNRDQKSVA 112 Query: 122 LLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSL---P 178 E +L +V + D L + + YKV+TP+ K I+ A + + Sbjct: 113 FFEDKL--KVKAHPYIDYNLHGATEVKKDSGAGYKVFTPYFKRWIRQEKPAPVSYVIDKR 170 Query: 179 VPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPA 238 + + RL P + F D F I +G + A +L +F E + Y E+RD PA Sbjct: 171 IKSARLLFPENEQLLETFIDDRFSFIKK--DLGSETAKKVLNRFINESLDQYDEERDFPA 228 Query: 239 IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKS-GAFSWLNELIWREFYRHLMAF 297 TS LS YL G +S R W + + P S G +++ EL WR+FY + Sbjct: 229 NDSTSHLSRYLRTGEISIRTVWRAIDQS-------PDSDGKSTFMKELCWRDFYNMIYVM 281 Query: 298 YPS---VCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLR 354 YP+ + K F ++W + +AW+ G TGFPI+DAAMRQLN GWMHNRLR Sbjct: 282 YPNQNVESVNKDF----RHVDWINNEQQFEAWRTGQTGFPIVDAAMRQLNATGWMHNRLR 337 Query: 355 MITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQ 414 MI ASFL KDLL+DWR GE YF ++LLD D ASN GGWQWAASTG DSVPYFRIFNPT+Q Sbjct: 338 MIVASFLTKDLLIDWRWGEAYFHNKLLDYDAASNIGGWQWAASTGTDSVPYFRIFNPTLQ 397 Query: 415 GKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND------LSLNYPLPIVDHKKACH 468 K+FD G FI+ ++PEL NV + IH P + + NYP PIVDH A Sbjct: 398 SKKFDSNGLFIKKYVPELKNVDNKMIHEPGKLSESEQTRFNVRIGQNYPFPIVDHSYARK 457 Query: 469 HTLNQYYAAK 478 ++ Y ++K Sbjct: 458 RAISIYESSK 467 >gi|120609600|ref|YP_969278.1| deoxyribodipyrimidine photo-lyase type I [Acidovorax citrulli AAC00-1] gi|120588064|gb|ABM31504.1| deoxyribodipyrimidine photo-lyase type I [Acidovorax citrulli AAC00-1] Length = 493 Score = 288 bits (738), Expect = 9e-76, Method: Compositional matrix adjust. Identities = 183/502 (36%), Positives = 265/502 (52%), Gaps = 43/502 (8%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 S LVW R DLR D+ ALY A +V VF+ + R+ FI SL+ Sbjct: 5 FSKGLVWFRRDLRSDDHAALYHALRQC-GQVHCVFVFDTAILDPLPRADRRVEFIRESLV 63 Query: 67 QVQKSLS------QKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120 Q+ SL G++ ++ + E + + + V +F N E + RD Sbjct: 64 QLDASLRALSGHRHGGLIVRHGVAA------EEVPALAARLGVQAVFANHDDEPVALERD 117 Query: 121 KLLEKRL-QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPV 179 + +RL V ++ D + +L Y V+TP++ A ++ + L + PV Sbjct: 118 DRVRRRLGTGGVQMLTYKDHAIFERAEVLTQGGTPYTVFTPYKNAWLRKVDAFYLSAYPV 177 Query: 180 PAIRLTGPVTP------SNIPRFFDYPFQ--AIDPM-FPIGEQNALHILRKFCKEKVYYY 230 R G + P +P D F+ +D + P G A +L F +++ Y Sbjct: 178 E--RHAGRLAPRPEGERGGVPALADIGFEPAGLDRLPLPPGMDGARALLDDFL-QRIDQY 234 Query: 231 VEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREF 290 E RD PA++G S LS +L G LSPR+ E + + +GA +WLNELIWR+F Sbjct: 235 GEARDFPAVKGPSYLSVHLRFGTLSPRRAARAAHER----MRQGSTGAATWLNELIWRDF 290 Query: 291 YRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQ---AWKQGYTGFPIIDAAMRQLNTIG 347 Y ++A +P V G F P + I W + AW +G TG+P++DAAM Q+N G Sbjct: 291 YFQVLAHHPQVAGGASFKPAYDAIAWEDGPQARERFAAWCEGRTGYPLVDAAMAQINRTG 350 Query: 348 WMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFR 407 +MHNRLRM+ ASFLVKDL VDWR GE YF +L D DL++NNGGWQWA+S+G D+ PYFR Sbjct: 351 YMHNRLRMVVASFLVKDLGVDWRWGERYFAEKLNDFDLSANNGGWQWASSSGCDAQPYFR 410 Query: 408 IFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSW------LDKNDLSL--NYPLP 459 IFNP Q ++FDP+G FIR +LP+L +P +++HAP W L+ + L NYP P Sbjct: 411 IFNPVSQSRKFDPKGRFIRLYLPQLAALPDRWLHAP--WEAGPLELEAAGVRLGDNYPHP 468 Query: 460 IVDHKKACHHTLNQYYAAKKQS 481 +VDH +A TL +Y K ++ Sbjct: 469 VVDHDEARQRTLARYAVVKSEA 490 >gi|221065219|ref|ZP_03541324.1| Deoxyribodipyrimidine photo-lyase [Comamonas testosteroni KF-1] gi|220710242|gb|EED65610.1| Deoxyribodipyrimidine photo-lyase [Comamonas testosteroni KF-1] Length = 496 Score = 288 bits (738), Expect = 1e-75, Method: Compositional matrix adjust. Identities = 190/502 (37%), Positives = 266/502 (52%), Gaps = 31/502 (6%) Query: 4 TTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYA 63 T + V L+WLR DLR+ DN ALY A + K+ VF+ + R+ FI Sbjct: 2 TPSYPVGLIWLRRDLRLADNAALYHALQQCE-KLYCVFVFDDSILAALPRADRRVEFICQ 60 Query: 64 SLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLL 123 SL ++ +L + Q + + + + Q +F N E + RD + Sbjct: 61 SLAELDAALRETTGRPQTGLITRRGLPQDIIPALARQLGAGAVFCNDDDEPAALARDAQV 120 Query: 124 EKRLQHRV-ICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVP-- 180 + L+ + + F D + +L +L + V+TP++ A ++ + L + P Sbjct: 121 ARSLKSQGQLLLRFKDHRIFARDEVLTQSLSPFSVFTPYKNAWLRKITPFYLSAYPSERD 180 Query: 181 -AIRLTG-PVTPS-NIPRFFDYPFQAIDPM----FPIGEQNALHILRKFCKEKVYYYVEQ 233 A +L P T IP D F A D + P G A +L F ++ Y Sbjct: 181 LASKLADLPDTERRTIPSAADLGF-APDTLAGLRLPTGVSGARRLLADFLP-RLPQYKAA 238 Query: 234 RDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFV---DLLIKPKSGAFSWLNELIWREF 290 RD PA++G S LS +L G +S R+ RL E D + GA +WL+ELIWR+F Sbjct: 239 RDFPALKGPSYLSVHLRFGTVSIREL-ARLAHEAAHHEDWSAAAREGAATWLSELIWRDF 297 Query: 291 YRHLMAFYPSVCMGKPFIPWTEKIEWNKDSH---LLQAWKQGYTGFPIIDAAMRQLNTIG 347 Y ++A P V + + F P + IEW + L AW +G TG+P++DAAMRQLNT G Sbjct: 298 YFQILAHQPYV-VERSFKPAYDAIEWETGAEADALFAAWCEGRTGYPLVDAAMRQLNTSG 356 Query: 348 WMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFR 407 +MHNRLRM+TASFLVKDL +DWR GE YF +L D DLA+NNGGWQWAASTG D+ P+FR Sbjct: 357 YMHNRLRMVTASFLVKDLGLDWRRGEAYFGEKLNDFDLAANNGGWQWAASTGCDAQPWFR 416 Query: 408 IFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKN--------DLSLNYPLP 459 IFNP Q ++FDP+G FI ++PEL +P + HAP WL K L +YPLP Sbjct: 417 IFNPVTQSEKFDPEGKFIVRYVPELTPLPAKLRHAP--WLAKPLELAEAGIALGRDYPLP 474 Query: 460 IVDHKKACHHTLNQYYAAKKQS 481 +VDH A TL +Y KK+S Sbjct: 475 VVDHAAAREKTLARYGILKKES 496 >gi|257877829|ref|ZP_05657482.1| deoxyribodipyrimidine photo-lyase type I [Enterococcus casseliflavus EC20] gi|257811995|gb|EEV40815.1| deoxyribodipyrimidine photo-lyase type I [Enterococcus casseliflavus EC20] Length = 473 Score = 288 bits (738), Expect = 1e-75, Method: Compositional matrix adjust. Identities = 175/491 (35%), Positives = 261/491 (53%), Gaps = 46/491 (9%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHN--SDAKVIAVFIATPEQWRQHGISARQSHFIYAS 64 M++H++W R DLR+ DN AL A + + ++ VF +Q+ S + +++ Sbjct: 1 MAIHVMWFRKDLRLEDNTALTEALVSLQENDHLLCVFHLNDKQFLPEAPS---HDYFFSA 57 Query: 65 LLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLE 124 + K+ ++ + ++ + L + ++L++N +RD ++ Sbjct: 58 VAHFIKAAKKQNLTIHL-LTGTLTEAFDQL--FACYPEWSQLYFNFDNRGFGRKRDLYIK 114 Query: 125 KRLQHR-VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIR 183 + ++ + + SF+D L P + YK +TP+ K IQ LP P + Sbjct: 115 ELVEKKGITVHSFEDHHLHQPTEVTKEDGTYYKKFTPYYKKWIQ---------LPKPVYQ 165 Query: 184 LTGPVTPSNIPRFFDYP-FQAIDPMFP-------------IGEQNALHILRKFCKEKVYY 229 ++ F D P F+A + +GE A L+ F ++++ Sbjct: 166 KQALDFEKSV-HFDDAPHFKAGTALLAKLLENRKTDFSTIVGEDYAHKQLQAFVQKRLAA 224 Query: 230 YVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWRE 289 Y + RDIP+I+GTS+LSP+LS G +S R+ W + + +G ++L EL WR+ Sbjct: 225 YEKDRDIPSIKGTSRLSPFLSFGQISIRKVWAACQG------MPSSTGKATFLKELAWRD 278 Query: 290 FYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWM 349 FY H++ F I ++W K+ L W+ G TG+PIIDAAMRQLN GWM Sbjct: 279 FY-HMIYFSHPEQKNYELIEKYRNMDWRKNEEELTKWQAGQTGYPIIDAAMRQLNQTGWM 337 Query: 350 HNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIF 409 HNRLRMI ASFL KDLL+DWR GE YF QL+D D ASN GGWQWAASTG D+VPYFRIF Sbjct: 338 HNRLRMIVASFLTKDLLIDWRQGEAYFARQLIDYDAASNIGGWQWAASTGTDAVPYFRIF 397 Query: 410 NPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND------LSLNYPLPIVDH 463 NP QGK+FD GTFI+ ++PEL +P ++IH P+ D+ L +YPLPIVDH Sbjct: 398 NPITQGKKFDKDGTFIKQFVPELAQLPLKFIHEPYLMTDEEQADLKVVLGTDYPLPIVDH 457 Query: 464 KKACHHTLNQY 474 +A L+ Y Sbjct: 458 NEARKRALDLY 468 >gi|170079382|ref|YP_001736020.1| deoxyribopyrimidine photolyase [Synechococcus sp. PCC 7002] gi|169887051|gb|ACB00765.1| deoxyribopyrimidine photolyase [Synechococcus sp. PCC 7002] Length = 477 Score = 288 bits (737), Expect = 1e-75, Method: Compositional matrix adjust. Identities = 173/469 (36%), Positives = 245/469 (52%), Gaps = 29/469 (6%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 L W R DLR+ DN AL A S AKV+ +F P + ++ + ++ A L ++ + Sbjct: 6 LHWHRRDLRLQDNVALAEARQQS-AKVVGIFCLDPAILEKEDVAPARVKYLLACLAELAE 64 Query: 71 SLSQKG---IVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127 + + G ++FQ + +E L +V +++N E +RD + L Sbjct: 65 NYQKAGSQLLIFQ-------GNPLEVLPKVAESLKVHTVYWNLDVEPYAQQRDHQMAIAL 117 Query: 128 -QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQA------DLRSLPVP 180 Q ++F D +L PG + + + Y VY+PF K Q A D + L Sbjct: 118 RQVGAKIETFWDQLLHAPGKVFTQSKKPYSVYSPFWKNWSQKSKAAPVTALRDCQGLSDA 177 Query: 181 AIRLTGPVTPSNIPRFFDYPFQAIDPM-FPIGEQNALHILRKFCKEKVYYYVEQRDIPAI 239 +L + +P D F P P+GE +L L +F + + Y R+ PA Sbjct: 178 EQKLAKDLGAIALPTLADLGFSWDKPFTVPVGETASLGQLDRFTENFIEKYDGDRNFPAT 237 Query: 240 QGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIK-PKSGAFSWLNELIWREFYRHLMAFY 298 GTS+LS L G + R W + K ++G +W EL WREFY+H + F+ Sbjct: 238 DGTSRLSAALKFGAIGIRTVWQATETALNHCRSKEAEAGVITWQQELAWREFYQHCLFFF 297 Query: 299 PSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITA 358 P + G P+ + W D QAW G TG+PIIDAAMRQLN GWMHNR RMI A Sbjct: 298 PELAQG-PYREEFKDFPWENDEEKFQAWCAGQTGYPIIDAAMRQLNETGWMHNRCRMIVA 356 Query: 359 SFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRF 418 SFL KDL++DWR GE+YFM L+DGDLA+NNGGWQW+AS+G D P RIFNP Q ++F Sbjct: 357 SFLTKDLIIDWRWGEKYFMQTLVDGDLAANNGGWQWSASSGMDPKP-LRIFNPYTQAQKF 415 Query: 419 DPQGTFIRHWLPELNNVPTQYI---HAPHSWLDKNDLSLNYPLPIVDHK 464 DP+ +IRHWLPEL+ + TQ + P ++D YP PIV+H+ Sbjct: 416 DPEADYIRHWLPELSGLDTQVLLTGQIPRLLCQQHD----YPEPIVEHR 460 >gi|319795849|ref|YP_004157489.1| deoxyribodipyrimidine photo-lyase [Variovorax paradoxus EPS] gi|315598312|gb|ADU39378.1| Deoxyribodipyrimidine photo-lyase [Variovorax paradoxus EPS] Length = 499 Score = 288 bits (736), Expect = 2e-75, Method: Compositional matrix adjust. Identities = 179/494 (36%), Positives = 266/494 (53%), Gaps = 34/494 (6%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 L+W R DLR+ DN ALY A +V+ VF+ + R+ FI SLL++Q Sbjct: 16 LMWFRRDLRVDDNAALYRALRAC-RQVVCVFVFDKAILDPLPSADRRVEFIRESLLELQA 74 Query: 71 SLS--QKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD-KLLEKRL 127 L G++ ++ +++ + + V +F NR E + + RD K+L Sbjct: 75 ELGALSGGLIVRHSH------AVQEIPALASDLGVQAVFANRDDEPDALERDAKVLGALA 128 Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVP--AIRLT 185 + ++ DS + +L Q Y V+TP+++A + + L+ PV A L Sbjct: 129 NAGIAFHTYKDSTVFDRDEVLTKTGQPYTVFTPYKRAWLAKVDSFFLKPYPVRGHADALV 188 Query: 186 GP--VTPSNIPRFFDYPFQAIDPM---FPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ 240 P +P + F+ + P G A + F E++ Y E R+ PA++ Sbjct: 189 PPPQAYREPMPSLGELGFEKTNLSALEIPTGSLGAGVLFEDFF-ERIDRYDEARNFPAVR 247 Query: 241 GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPS 300 G S + +L G +S RQ + + L ++ +GA +WL+ELIWR+FY ++ +P Sbjct: 248 GPSYMGVHLRFGTVSIRQVASVAHQ----LSLQGNAGAATWLSELIWRDFYFQILTHFPH 303 Query: 301 V---CMGKPFIPWTEKIEWNKDSH---LLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLR 354 V K F P +KI+W+ H LL AW +G TG+P++DAAM Q+N G+MHNRLR Sbjct: 304 VHKDGESKSFRPEYDKIQWHHGKHADQLLDAWCEGRTGYPLVDAAMLQINQSGYMHNRLR 363 Query: 355 MITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQ 414 M+ ASFL KDL +DWR GE YF L D +LASNNGGWQWA+S+G D+ PYFRIFNP Q Sbjct: 364 MVVASFLCKDLGLDWRRGERYFALHLNDFELASNNGGWQWASSSGCDAQPYFRIFNPVTQ 423 Query: 415 GKRFDPQGTFIRHWLPELNNVPTQYIHAPHSW----LDKNDLSLN--YPLPIVDHKKACH 468 +RFDP+G FIR +LP+L + IHAP + L+ + L YPLP+VDH +A Sbjct: 424 SERFDPEGKFIRRYLPQLARLSNAAIHAPWTASPVELEAAGIKLGETYPLPVVDHAEARE 483 Query: 469 HTLNQYYAAKKQSL 482 TL +Y A+ ++L Sbjct: 484 KTLQRYGVARAKAL 497 >gi|91777293|ref|YP_552501.1| deoxyribodipyrimidine photo-lyase type I [Burkholderia xenovorans LB400] gi|91689953|gb|ABE33151.1| deoxyribodipyrimidine photo-lyase type I [Burkholderia xenovorans LB400] Length = 499 Score = 287 bits (735), Expect = 2e-75, Method: Compositional matrix adjust. Identities = 185/504 (36%), Positives = 266/504 (52%), Gaps = 61/504 (12%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATP-------EQWRQHGISA----RQSH 59 LVWLR DLR TDN ALY A + + +V VF+ + W R+ Sbjct: 15 LVWLRRDLRNTDNAALYYALKHCE-RVWCVFVFDTTILQPLVDAWHARHPDTQPQDRRIE 73 Query: 60 FIYASLLQVQKSLSQKG---IVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINE 116 FI A+L ++ ++L G IV + + E + + V +F N YE Sbjct: 74 FILAALGELDEALRADGGGLIVL-------YGNPAELVPKLADELGVDAVFANHDYEPVA 126 Query: 117 VRRDKLLEKRL-QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLR 175 + RD + +RL + +F D V+ +L + + V+TP+R A ++ L DL+ Sbjct: 127 IERDGTVRERLAEAGRQWLTFKDQVIFERDEVLTGQSKPFTVFTPYRNAWLRQLSAFDLK 186 Query: 176 SLPVP--AIRLTGPVTPSNIPRFFDYPFQAIDPM-----------FPIGEQNALHILRKF 222 PV A RL +P FD ++ + P G A +L F Sbjct: 187 PYPVETYAKRLAA------LPSKFDRQLPTLEQLGFAPSNLGELNLPAGMSGAQRLLDDF 240 Query: 223 CKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKS-GAFSW 281 ++ Y ++RD PA +G S LS +L G +S R RL E + ++P G+ +W Sbjct: 241 MT-RIDSYADRRDFPAAKGPSYLSIHLRFGTVSIRTL-ARLAHE---MSLQPDGQGSATW 295 Query: 282 LNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKD---SHLLQAWKQGYTGFPIIDA 338 L+ELIWR+FY ++A +P + G F +++ W + AW G TG+P++DA Sbjct: 296 LSELIWRDFYFMILAHHPRLARGASFREEYDRLRWEQGLQADEAFAAWCNGRTGYPLVDA 355 Query: 339 AMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAAST 398 AM QLN G+MHNRLRM+TASFLVKDL VDWR+GE YF QL D D ++NNGGWQWAAST Sbjct: 356 AMLQLNRTGYMHNRLRMVTASFLVKDLGVDWRLGERYFAEQLNDFDFSANNGGWQWAAST 415 Query: 399 GNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND------- 451 G D+ PYFRIFNP Q ++FD +G FI+ +LP+L +P+++IHAP WL + Sbjct: 416 GCDAQPYFRIFNPVTQSEKFDAEGRFIKRYLPQLAKLPSKWIHAP--WLAGAERLADCGV 473 Query: 452 -LSLNYPLPIVDHKKACHHTLNQY 474 L +YP PIVDH +A TL ++ Sbjct: 474 VLGKDYPAPIVDHAEARARTLARF 497 >gi|330825562|ref|YP_004388865.1| deoxyribodipyrimidine photo-lyase [Alicycliphilus denitrificans K601] gi|329310934|gb|AEB85349.1| Deoxyribodipyrimidine photo-lyase [Alicycliphilus denitrificans K601] Length = 487 Score = 287 bits (735), Expect = 2e-75, Method: Compositional matrix adjust. Identities = 182/489 (37%), Positives = 258/489 (52%), Gaps = 35/489 (7%) Query: 8 SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67 S LVWLR DLR D+ ALY A A T R+ FI+ASLL+ Sbjct: 3 STALVWLRRDLRCDDHAALYHALRRYPRVYCAFVFDTGILDELPSRQDRRVEFIHASLLE 62 Query: 68 VQKSLSQ---------KGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVR 118 + + L Q G++ ++ ++E + + V ++ NR YE + Sbjct: 63 LHQGLQQLAARSGAPGGGLIVRH------GPALECIVQLAQELGVQEVLANRDYEPQAIA 116 Query: 119 RDKLLEKRLQHRVICKS-FDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSL 177 RD+ + + L I S + D VLL +L + Y V+TP+++A +Q L L+ Sbjct: 117 RDQSVAQALHALGIAFSDYKDQVLLDRDEVLTQQGRPYSVFTPYKRAWLQRLDDFQLKPY 176 Query: 178 PVP--AIRLTGPVTPSNIPRFFDYPFQAID----PMFPIGEQNALHILRKFCKEKVYYYV 231 PV A L P +P D F + P+ P G A +L+ F ++ Y Sbjct: 177 PVDRYAHHLAPPPADERLPTLSDLSFGPTNLRELPL-PSGMSGAQRLLQDFVP-RMAAYQ 234 Query: 232 EQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFY 291 E RD P +G S LS +L G +S RQ ++ + GA +WL+EL WR+FY Sbjct: 235 EARDYPGRKGVSYLSVHLRFGTVSIRQLAALAAKQAAEGC----GGAQTWLSELAWRDFY 290 Query: 292 RHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHN 351 ++ +P V + F P ++++W++ L QAW + TG+P++DAAM QL G+MHN Sbjct: 291 FMILWHHPQVVT-QSFKPEYDRVQWDEAPELWQAWCEARTGYPLVDAAMHQLLQTGYMHN 349 Query: 352 RLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNP 411 RLRM+ ASFL KDL +DWR GE +F L D DLA+NNGGWQWAASTG D+ PYFRIFNP Sbjct: 350 RLRMVVASFLTKDLGIDWRRGERFFAQHLNDYDLAANNGGWQWAASTGCDAQPYFRIFNP 409 Query: 412 TIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND------LSLNYPLPIVDHKK 465 Q +RFDP GTFIR +LPEL VP +IH P + L ++YP+P+VDH + Sbjct: 410 ITQSQRFDPDGTFIRRYLPELVGVPDAHIHFPAAMKPAALAACGLRLGVDYPVPVVDHAR 469 Query: 466 ACHHTLNQY 474 A TL ++ Sbjct: 470 ARQRTLMRF 478 >gi|171463059|ref|YP_001797172.1| Deoxyribodipyrimidine photo-lyase [Polynucleobacter necessarius subsp. necessarius STIR1] gi|171192597|gb|ACB43558.1| Deoxyribodipyrimidine photo-lyase [Polynucleobacter necessarius subsp. necessarius STIR1] Length = 490 Score = 287 bits (735), Expect = 2e-75, Method: Compositional matrix adjust. Identities = 180/498 (36%), Positives = 260/498 (52%), Gaps = 35/498 (7%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPE--------QWRQHGIS-ARQ 57 M LVWLR DLR+ DN AL+ A S +V FI E + +G+ R+ Sbjct: 1 MQKALVWLRRDLRLYDNSALHHALKES-RQVWLAFIFDTEILKPLLRGKLDANGLKHDRR 59 Query: 58 SHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEV 117 FI+ + Q+ L +G F + E + + V +F N YE + + Sbjct: 60 VDFIWQGIKQIDDQLRAQGGGL----IVRFSNPTECIPQLASELGVNAVFANHDYEPSAI 115 Query: 118 RRDKLLEKRLQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRS 176 RD+++ +L+ I +F D V+ IL ++ ++ ++TP++ + L + DL + Sbjct: 116 ERDEVVTAKLEKEGIEFLTFKDQVIFEKKEILTNSNTVFSIFTPYKNNWFKTLQEKDLAA 175 Query: 177 L---PVPAIRLTGPVTPSN-IPRFFDYPF--QAIDPMFPIGEQNALHILRKFCKEKVYYY 230 P P P S +P F I+ P G + L F ++ Y Sbjct: 176 YECNPKPGQLAAIPKKISKPLPSLESMGFCPTGIESYLPPGSEGGQAFLEDFLT-RIDQY 234 Query: 231 VEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREF 290 RD PAI+G S LS +L G+LS R L E ++ GA WL+ELIWR+F Sbjct: 235 QISRDFPAIKGVSYLSTHLRFGMLSIRG----LVREAHRRMLAGSMGATIWLSELIWRDF 290 Query: 291 YRHLMAFYPSVCMGKPFIPWTEKIEWNKDS---HLLQAWKQGYTGFPIIDAAMRQLNTIG 347 Y ++A +P + G F P + I W + L AW +G TG+P++DAAM QLN G Sbjct: 291 YFMILANHPRLAKGASFKPDYDNIVWESGATAKKLFTAWCEGKTGYPLVDAAMHQLNQSG 350 Query: 348 WMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFR 407 +MHNRLRM+ ASFL KDL +DWR GE YF L D +L+SNNGGWQW +S+G D+ PYFR Sbjct: 351 YMHNRLRMVVASFLTKDLGIDWRWGEAYFAEHLNDFELSSNNGGWQWVSSSGCDAQPYFR 410 Query: 408 IFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAP----HSWLDKNDLSL--NYPLPIV 461 IFNP Q ++FDP+G FI+ +LP+L + + +H P H L+ +SL +YPLP+V Sbjct: 411 IFNPITQSEKFDPEGKFIKRYLPQLEKLSKKSVHTPWKAGHIELEAAGISLDKDYPLPVV 470 Query: 462 DHKKACHHTLNQYYAAKK 479 DH +A TL +Y KK Sbjct: 471 DHDEARKKTLVRYSVVKK 488 >gi|264680117|ref|YP_003280026.1| DNA photolyase, FAD-binding protein [Comamonas testosteroni CNB-2] gi|262210632|gb|ACY34730.1| DNA photolyase, FAD-binding protein [Comamonas testosteroni CNB-2] Length = 512 Score = 287 bits (734), Expect = 3e-75, Method: Compositional matrix adjust. Identities = 188/502 (37%), Positives = 265/502 (52%), Gaps = 31/502 (6%) Query: 4 TTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYA 63 T + V L+WLR DLR+ DN ALY A + K+ VF+ + R+ FI Sbjct: 18 TPSYPVGLIWLRRDLRLADNAALYHALQQCE-KLYCVFVFDDSILAALPRADRRVEFICQ 76 Query: 64 SLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLL 123 SL ++ +L + Q + + + + Q +F N E + RD + Sbjct: 77 SLTELAAALRETAGRPQTGLITRRGLPQDIIPALARQLGAGAVFCNDDDEPAAIARDAQV 136 Query: 124 EKRLQHRV-ICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVP-- 180 + L+ + + F D + +L +L + V+TP++ A ++ + L + P Sbjct: 137 ARSLKSQGQLLLRFKDHRIFARDEVLTQSLSPFSVFTPYKNAWLRKITPFYLSAYPSERD 196 Query: 181 -AIRLTG-PVTPSN-IPRFFDYPFQAIDPM----FPIGEQNALHILRKFCKEKVYYYVEQ 233 A +L P T IP D F A D + P G A +L F ++ Y Sbjct: 197 LASKLADLPDTERRPIPSAADLGF-APDTLAGLRLPTGVSGARQLLADFLP-RLPQYKTA 254 Query: 234 RDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFV---DLLIKPKSGAFSWLNELIWREF 290 RD PA++G S LS +L G +S R+ RL E D + GA +WL+ELIWR+F Sbjct: 255 RDFPALKGPSYLSVHLRFGTVSIREL-ARLAHEAAHNEDWSAAAREGAATWLSELIWRDF 313 Query: 291 YRHLMAFYPSVCMGKPFIPWTEKIEWNKDSH---LLQAWKQGYTGFPIIDAAMRQLNTIG 347 Y ++A P V + + F P + IEW + L AW +G TG+P++DAAMRQLN+ G Sbjct: 314 YFQILAHQPYV-VERSFKPAYDAIEWETGAEADTLFAAWCEGRTGYPLVDAAMRQLNSSG 372 Query: 348 WMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFR 407 +MHNRLRM+TASFLVKDL +DWR GE YF +L D DLA+NNGGWQWAASTG D+ P+FR Sbjct: 373 YMHNRLRMVTASFLVKDLGLDWRRGEAYFAEKLNDFDLAANNGGWQWAASTGCDAQPWFR 432 Query: 408 IFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKN--------DLSLNYPLP 459 IFNP Q ++FDP G FI ++PEL +P + HAP WL K L +YPLP Sbjct: 433 IFNPVTQSEKFDPDGKFIVRYVPELTPLPAKLRHAP--WLAKPLELAEAGITLGRDYPLP 490 Query: 460 IVDHKKACHHTLNQYYAAKKQS 481 +VDH A TL +Y KK++ Sbjct: 491 VVDHAAAREKTLARYGILKKEA 512 >gi|332711249|ref|ZP_08431182.1| deoxyribodipyrimidine photo-lyase type I [Lyngbya majuscula 3L] gi|332350063|gb|EGJ29670.1| deoxyribodipyrimidine photo-lyase type I [Lyngbya majuscula 3L] Length = 474 Score = 287 bits (734), Expect = 3e-75, Method: Compositional matrix adjust. Identities = 171/470 (36%), Positives = 249/470 (52%), Gaps = 29/470 (6%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 L W R DLRI+DN L AA S K++ VF P + I+ + ++ L Q+Q+ Sbjct: 6 LFWHRRDLRISDNVGLAAAFELS-PKLVGVFCLDPTILERDDIAPARVTYMIGCLEQLQQ 64 Query: 71 SLSQKGI-VFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH 129 Q G + HQ D + + + + +N E RD+ + L+ Sbjct: 65 GYRQAGSQLLILHQ-----DPRQGIPNLAAALEAKAVCWNWDVEPYSKERDQDVAAGLKE 119 Query: 130 RVICK-SFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188 + I ++ D +L PG I + Y VYTPF K Q ++ PV + + Sbjct: 120 KGIAVYNYWDQLLHAPGEIFTKSGNPYSVYTPFWKNW-----QGQSKAEPVATLTRVESL 174 Query: 189 TP-----------SNIPRFFDYPFQAIDPMF-PIGEQNALHILRKFCKEKVYYYVEQRDI 236 T +++P D + + + P GE+ A IL +FC + Y EQR+ Sbjct: 175 TEIEQDNALAAGVTDLPSAIDLGYVWENELLVPPGEKVAQEILEEFCDRTIGDYHEQRNF 234 Query: 237 PAIQGTSQLSPYLSIGVLSPRQCWNRLKEEF-VDLLIKPKSGAFSWLNELIWREFYRHLM 295 P + GTS+LS L GV+ R+ W + + + + + +W EL WREFY+H M Sbjct: 235 PGVDGTSKLSAALKFGVIGIRRVWQAAQNAYNLSRSDEARQSIQTWQQELAWREFYQHAM 294 Query: 296 AFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRM 355 F+P + G P+ + W+ + QAW +G TG+PI+DAAMRQLN GWMHNR RM Sbjct: 295 YFFPELAQG-PYRQKFQDFPWDNNPEFFQAWCEGKTGYPIVDAAMRQLNQTGWMHNRCRM 353 Query: 356 ITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQG 415 I ASFL KDL+++W+ GE+YFM +L DGDL++NNGGWQW+AS+G D P RIFNP Q Sbjct: 354 IVASFLTKDLIINWQWGEKYFMQRLSDGDLSANNGGWQWSASSGMDPKP-LRIFNPASQA 412 Query: 416 KRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKK 465 K+FDP G +IR WLPEL++V T+Y+ + ++ YP PIVDH + Sbjct: 413 KKFDPDGEYIREWLPELSSVDTEYVVSGKIPESGREM-CGYPAPIVDHNQ 461 >gi|253997258|ref|YP_003049322.1| Deoxyribodipyrimidine photo-lyase [Methylotenera mobilis JLW8] gi|253983937|gb|ACT48795.1| Deoxyribodipyrimidine photo-lyase [Methylotenera mobilis JLW8] Length = 473 Score = 287 bits (734), Expect = 3e-75, Method: Compositional matrix adjust. Identities = 178/487 (36%), Positives = 254/487 (52%), Gaps = 41/487 (8%) Query: 8 SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISA-RQSHFIYASLL 66 S LVW R DLR D+ ALY A S +V VF+ + Q A R+ FI+ S+ Sbjct: 4 STSLVWFRRDLRDYDHAALYYALKASQ-QVYCVFVFDTDILNQLSDKADRRVEFIWESVQ 62 Query: 67 QVQKSLSQKG---IVFQ---YHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120 +++ +L Q+G IV H+ +++ +F N YE + + RD Sbjct: 63 ELKTALQQRGSDLIVLHGSAQHEVPQLAQTLQ----------AQAVFANHDYEPSAIARD 112 Query: 121 KLLEKRLQ-HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPV 179 + ++LQ H + + D + +L A + Y V+TP++ A ++ + L++ PV Sbjct: 113 AQVAQQLQAHDIDFHHYKDQAIFEKDEVLTMAHKPYSVFTPYKNAWLKTVNDFYLKAYPV 172 Query: 180 PA-IRLTGPVTPSNIPRFFDYPFQAIDPM---FPIGEQNALHILRKFCKEKVYYYVEQRD 235 + + P + + FQ + P G + + F E++ +Y E RD Sbjct: 173 EHYLNKLAKIQPQPLASLESFGFQRTNLSSLRLPTGMSGSATLFDDFI-ERIKHYKEARD 231 Query: 236 IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLM 295 PA++G S LS +L G +S RQ R + GA +WL+ELIWR+FY ++ Sbjct: 232 FPAVKGVSYLSVHLRFGTISIRQL-ARTAMQIGGF------GAETWLSELIWRDFYFQIL 284 Query: 296 AFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRM 355 P + GK F E I + + L AW +G TG+P++DAAMRQLNT G+MHNRLRM Sbjct: 285 HHNPQLEAGKAFKTEFEAIAFPNSATLFTAWCEGKTGYPLVDAAMRQLNTTGFMHNRLRM 344 Query: 356 ITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQG 415 + ASFLVKDLL+DWR GE YF L+D D ++NNGGWQWAASTG D+ P+FRIFNP Q Sbjct: 345 VAASFLVKDLLIDWRWGERYFAENLIDFDFSANNGGWQWAASTGCDAQPWFRIFNPITQS 404 Query: 416 KRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND--------LSLNYPLPIVDHKKAC 467 +RFD G FIR ++ EL + IHAP WL + NYP PIVDH Sbjct: 405 ERFDGHGKFIRKYVAELAQCNDKEIHAP--WLMSAQRQSSINTVIGQNYPKPIVDHATQR 462 Query: 468 HHTLNQY 474 L+ Y Sbjct: 463 ERVLSLY 469 >gi|171060633|ref|YP_001792982.1| deoxyribodipyrimidine photo-lyase [Leptothrix cholodnii SP-6] gi|170778078|gb|ACB36217.1| Deoxyribodipyrimidine photo-lyase [Leptothrix cholodnii SP-6] Length = 511 Score = 287 bits (734), Expect = 3e-75, Method: Compositional matrix adjust. Identities = 189/497 (38%), Positives = 253/497 (50%), Gaps = 35/497 (7%) Query: 5 TAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYAS 64 T + LVWLR DLR+ D+ AL+ A S KV FI + R+ FI+ Sbjct: 28 TPVDAALVWLRRDLRLDDHAALHHAL-RSAKKVWCAFIFDTTILDALPRADRRVEFIHHG 86 Query: 65 LLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLE 124 ++++ L G D ++ + + V + NR YE V RD + Sbjct: 87 IVELDGLLRAHGSGL----IVRHGDPLQEIPAIAGALGVQAVHINRDYEPAAVARDAQVR 142 Query: 125 KRLQHRVIC-KSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIR 183 L H I S D V+ IL A + V+TP++ A ++ L LR+ PV R Sbjct: 143 GALAHAGIALHSHKDQVIFETDEILTMAGSPFSVFTPYKNAWLKKLDGYYLRAYPVQ--R 200 Query: 184 LTGPVTP------SNIPRFFDYPFQAIDPMFPI--GEQNALHILRKFCKEKVYYYVEQRD 235 G + P +P D F D + G +L F E++ Y + RD Sbjct: 201 HIGALAPVPAALDRGVPTLNDLDFLPTDMAARLHPGASGGATLLLDFL-ERIDRYADTRD 259 Query: 236 IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLM 295 PAI+G S LS +L G +S RQ RL E ++ GA WL+ELIWR+FY ++ Sbjct: 260 FPAIKGPSYLSVHLRFGTVSIRQL-ARLAHE---RMVGGSRGAEVWLSELIWRDFYHQIL 315 Query: 296 AFYPSVCMGKPFIPWTEKIEWNKDSH---LLQAWKQGYTGFPIIDAAMRQLNTIGWMHNR 352 +P V + P E + W H L AW +G TG+PIIDAAM QLN G+MHNR Sbjct: 316 HHHPRVVT-HCYKPEYEALRWEHGKHAEQLFAAWCEGRTGYPIIDAAMLQLNRTGYMHNR 374 Query: 353 LRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPT 412 LRM+ ASFL KDL +DWR GE YF QL D DLA+NNGGWQWAASTG D+ PYFRIFNP Sbjct: 375 LRMVVASFLTKDLGIDWRRGEAYFALQLNDYDLAANNGGWQWAASTGCDAQPYFRIFNPI 434 Query: 413 IQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKN--------DLSLNYPLPIVDHK 464 Q RFD +G FIR +LP+L ++ IHAP W K L +YP+P+V+H Sbjct: 435 SQSLRFDAEGRFIRRYLPQLADLSRAAIHAP--WQAKPLELQAAGVKLGRDYPMPVVEHA 492 Query: 465 KACHHTLNQYYAAKKQS 481 +A TL ++ A K + Sbjct: 493 EARELTLARFAAVKGAA 509 >gi|46446306|ref|YP_007671.1| putative photolyase [Candidatus Protochlamydia amoebophila UWE25] gi|46399947|emb|CAF23396.1| putative photolyase [Candidatus Protochlamydia amoebophila UWE25] Length = 471 Score = 287 bits (734), Expect = 3e-75, Method: Compositional matrix adjust. Identities = 173/480 (36%), Positives = 261/480 (54%), Gaps = 33/480 (6%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVF--IATPE-QWRQHGISARQSHFIYASLLQ 67 +VW R D R+ DN AL AA VI VF + PE +W+ G S ++Y SL+ Sbjct: 6 IVWFRQDFRLEDNPALNAATQKG-GPVIPVFNWVFNPEKEWQLGGAS---QWWLYYSLIS 61 Query: 68 VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127 ++ LS+ G+ + +D ++ L + +++NR+YE ++ D ++ L Sbjct: 62 LKNDLSELGLSLIIRK----EDPLKSLLEIAHETGADTVYWNRRYEPMLIQDDAKIKTEL 117 Query: 128 QHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVP--AIRL 184 Q + I SF+ ++L P +I N + ++V+TPF ++ + LPVP + Sbjct: 118 QKQGIKAHSFNGNLLFEPWTIANKQGKPFQVFTPFWNQCLK--LNDPEVPLPVPHSLKKF 175 Query: 185 TGPVTPSNIPRFFDYPF----QAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ 240 G + +I P + + ++ G ++A +L+K + Y++ RD+P Sbjct: 176 VGQLQTESIDSLNLLPKIKWDKGLKEVWSPGAKSAKALLKKGLTGVIDQYLDIRDLPDHD 235 Query: 241 GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPS 300 GTS LSPYL G +SPR W +KE GA +L ++ WREF HL+ +P Sbjct: 236 GTSLLSPYLHFGEISPRMIWQAVKENSTS------KGAEGYLRQIGWREFAHHLLYHFPE 289 Query: 301 VCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASF 360 KP W D L+AW++G TG+PIIDA MRQL IGWMHNR+R+I SF Sbjct: 290 TPQ-KPLRSQFNSFSWKNDKQNLKAWQKGQTGYPIIDAGMRQLWKIGWMHNRVRLIVGSF 348 Query: 361 LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDP 420 LVKDL++ W G ++F L+D DLA+N GWQW A G D+ PYFRIFNP QG++FDP Sbjct: 349 LVKDLMIHWIEGAKWFWDTLVDADLANNTMGWQWIAGCGADAAPYFRIFNPITQGEKFDP 408 Query: 421 QGTFIRHWLPELNNVPTQYIH----APHSWLDKN--DLSLNYPLPIVDHKKACHHTLNQY 474 +G +++ W+PEL N+P +++H AP L ++ +L +NYP PIV+H KA L Y Sbjct: 409 EGNYVKKWVPELINLPKEWLHQPWEAPEEILRQSGIELGINYPKPIVNHAKAREEALQAY 468 >gi|86607703|ref|YP_476465.1| deoxyribodipyrimidine photolyase [Synechococcus sp. JA-2-3B'a(2-13)] gi|86556245|gb|ABD01202.1| deoxyribodipyrimidine photolyase [Synechococcus sp. JA-2-3B'a(2-13)] Length = 487 Score = 286 bits (733), Expect = 4e-75, Method: Compositional matrix adjust. Identities = 177/477 (37%), Positives = 258/477 (54%), Gaps = 17/477 (3%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 L+W R DLR+ DN AL+ A S ++V+ VFI P+ R+ ++ + F+ +L ++Q+ Sbjct: 6 LLWHRRDLRLGDNTALHEAAQRS-SQVVPVFIFDPQMLRRSDMAPARVAFLLQALQELQE 64 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130 +Q GI + D S+E L + +F+N E ++++ ++ L Sbjct: 65 RYAQMGIPLIWRLG---DPSVE-LRCLAIDLGARAVFWNADGEPFALQQESRVQASLAAA 120 Query: 131 VICK-SFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189 I S+ D +L PG +L A + Y V+TPF + +L + D +P ++G + Sbjct: 121 GIQSFSYQDMLLHGPGEVLTQAGEPYSVFTPFWRRWA-SLPKPDPYPIPKGLQPVSG-LK 178 Query: 190 PSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKE-KVYYYVEQRDIPAIQGTSQLSPY 248 +P D F + GE A +L FC+ ++ Y R+ PA GTS LSP+ Sbjct: 179 AQPLPTLADLGFVCDQRIPAAGEAAAQALLEDFCQGLRILDYERARNFPAEPGTSLLSPH 238 Query: 249 LSIGVLSPRQCWNRLKEEFVDLLIKPKSGAF-SWLNELIWREFYRHLMAFYPSVCMGKPF 307 L G + RQ W +E ++ + + +W EL WREFY+H++A +P V G + Sbjct: 239 LCWGTIGIRQVWQATREVEAEVRSQEAESSLQTWRQELCWREFYKHVLAHWPHVETGA-Y 297 Query: 308 IPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLV 367 + +EW+ QAW G TG+PI+DAAMRQLN GWMHNR RMI ASFL KDLL+ Sbjct: 298 RRAFDALEWDNRQDWFQAWCTGQTGYPIVDAAMRQLNETGWMHNRCRMIVASFLTKDLLI 357 Query: 368 DWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRH 427 DWR GE YFM +L+DGDLA+NNGGWQW+AS G D P RIFNP Q R+DP+G +IR Sbjct: 358 DWRWGERYFMQKLVDGDLAANNGGWQWSASVGTDPKP-LRIFNPATQAARYDPEGEYIRR 416 Query: 428 WLPELNNVPTQYI-----HAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479 +LPEL + T + +W + S YP PIVDHK +Y A ++ Sbjct: 417 YLPELARLDTPALLWVGDDPKGAWALRERRSCGYPDPIVDHKVQQQAFKRRYQAVQQ 473 >gi|62910844|gb|AAY21157.1| deoxyribopyrimidine photolyase [Prochloron didemni] Length = 475 Score = 286 bits (733), Expect = 4e-75, Method: Compositional matrix adjust. Identities = 168/462 (36%), Positives = 256/462 (55%), Gaps = 17/462 (3%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 L W R DLRI+DN L AA +K++ +F P + ++ + ++ L ++++ Sbjct: 6 LFWHRRDLRISDNMGL-AAARKQSSKIVGLFCLDPNILNSNEVAPARVTYMLGCLQELKE 64 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL-QH 129 S S+ G + + IE + + +VT +F+++ E RD +E+ L + Sbjct: 65 SYSKIGSQLLIVR----GEPIEAIPQLAVALQVTGVFWHKDGEPYARERDGKVEQELLKQ 120 Query: 130 RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQN--LVQAD----LRSLPVPAIR 183 + ++ D +L PP IL + + Y VYTPF K Q L A+ ++ L I+ Sbjct: 121 GIAVTNYWDQLLHPPEDILTQSGKPYTVYTPFWKNWSQKPKLEVAEKLDRIQGLTAEEIK 180 Query: 184 LTGPVTPSNIPRFFDYPFQ-AIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGT 242 + ++P D + + + GE A L +F + + Y EQR+ PA++GT Sbjct: 181 IAQETGVVSLPTGKDLGYYWDGELILTPGETAAREQLEEFSERAIAQYQEQRNFPAVEGT 240 Query: 243 SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKP-KSGAFSWLNELIWREFYRHLMAFYPSV 301 S LSP L GV+ R W E + + ++ +W EL WREFY+H + +P + Sbjct: 241 SLLSPALRFGVIGIRTVWQATLEATKNSYSEEVRANIETWQKELAWREFYQHALYHFPQL 300 Query: 302 CMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFL 361 + +P+ + W+ + QAW +G TG+P++DAAMRQLN GWMHNR RMI ASFL Sbjct: 301 TV-EPYRQQFKDFPWDNNPEHFQAWCEGKTGYPMVDAAMRQLNETGWMHNRCRMIVASFL 359 Query: 362 VKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQ 421 KDL+++W+ GE+YFM +L DGDLASNNGGWQW+AS G D P RIFNP Q K+FDP+ Sbjct: 360 TKDLIINWQWGEQYFMQKLCDGDLASNNGGWQWSASCGMDPKP-LRIFNPASQAKKFDPE 418 Query: 422 GTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDH 463 G +IR WLPEL+++ T+Y+ D+ + +YP PIVDH Sbjct: 419 GEYIRQWLPELSSIDTEYLVRGKIPDDERE-RCDYPQPIVDH 459 >gi|220905687|ref|YP_002480998.1| Deoxyribodipyrimidine photo-lyase [Cyanothece sp. PCC 7425] gi|219862298|gb|ACL42637.1| Deoxyribodipyrimidine photo-lyase [Cyanothece sp. PCC 7425] Length = 475 Score = 286 bits (733), Expect = 4e-75, Method: Compositional matrix adjust. Identities = 180/477 (37%), Positives = 253/477 (53%), Gaps = 39/477 (8%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 L W R DLRI DN L AA AKV+ VF P + ++ + ++ SL +Q+ Sbjct: 6 LFWHRRDLRIADNVGL-AAARQRTAKVVGVFCLDPNLLERDDVAPARVAYMIGSLQHLQQ 64 Query: 71 SLSQKGI-VFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH 129 Q G + HQ +I L + LQ + +F+N E RD+ ++ L+ Sbjct: 65 QYVQSGSQLLILHQQPTI--AIPQL-ATALQAKA--VFWNWDVEPYSQERDRTVQTALET 119 Query: 130 RVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188 I ++F D +L PP +I + + Y V++PF + + + PVP++ + Sbjct: 120 VGIEVQNFWDQLLHPPAAIKTGSGEAYTVFSPFWRNWSRQP-----KEPPVPSLATATGL 174 Query: 189 TPSN-----------IPRFFDYPFQAIDPM-FPIGEQNALHILRKFCKEKVYYYVEQRDI 236 TP+ +P D F P+ GE A L +FC+ +Y Y ++R+ Sbjct: 175 TPTEQQAADQVGAIALPTAKDLGFIWDTPLPLEPGETAAQERLEQFCQRAIYAYQQERNF 234 Query: 237 PAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAF-SWLNELIWREFYRHLM 295 PA GTSQLS L GVL R W + + + +W EL WREFY+H + Sbjct: 235 PATTGTSQLSAALKFGVLGIRTVWATTQSALESSRSQEAEDSIQTWQQELAWREFYQHAL 294 Query: 296 AFYPSVCMG---KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNR 352 ++P++ G +PF + W QAW +G TG+PI+DAAMRQ+NTIGWMHNR Sbjct: 295 YWFPALAEGAYRQPF----KTFPWQNRPDYFQAWCEGRTGYPIVDAAMRQMNTIGWMHNR 350 Query: 353 LRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPT 412 RMI ASFL KDLL+D R GE+YFM +L+DGDLA+NNGGWQW+AS+G D P RIFNP Sbjct: 351 CRMIVASFLTKDLLIDPRWGEKYFMQKLVDGDLAANNGGWQWSASSGMDPKP-LRIFNPA 409 Query: 413 IQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHH 469 Q ++FDP+ +IR WLPEL +V T + L++ D YPL IVDH HH Sbjct: 410 SQSQKFDPEADYIREWLPELRSVETADLVTGKISLEERD-RCGYPLAIVDH----HH 461 >gi|73540409|ref|YP_294929.1| deoxyribodipyrimidine photo-lyase type I [Ralstonia eutropha JMP134] gi|72117822|gb|AAZ60085.1| Deoxyribodipyrimidine photo-lyase type I [Ralstonia eutropha JMP134] Length = 525 Score = 286 bits (733), Expect = 4e-75, Method: Compositional matrix adjust. Identities = 185/497 (37%), Positives = 259/497 (52%), Gaps = 42/497 (8%) Query: 11 LVWLRNDLRITDNKAL-YAACHNSDAKVIAVF---IATPEQWRQHGISA-RQSHFIYASL 65 LVW R DLR TD+ AL YA H + + VF I P R G+ R+ FI ASL Sbjct: 37 LVWFRRDLRSTDHAALHYALKHCREVWCVFVFDRDILDPLLAR--GLKGDRRVDFIRASL 94 Query: 66 LQVQKSLSQKG---IVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKL 122 +++ +L G IV D + + + + V +F N YE + V RD Sbjct: 95 IELDATLRAAGGGLIVMN-------DSAASAIPALARELGVQAVFANHDYEPDAVARDAA 147 Query: 123 LEKRLQHRV-ICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPV-P 180 + L + +F D V+ IL + + V+TP++ A ++ + DLR P+ P Sbjct: 148 VRDSLAGDARVLFTFKDQVIFERDEILTSQGKPFAVFTPYKNAWLKTIQPFDLRPYPIEP 207 Query: 181 AIRLTGPVTPSN----IPRFFDY---PFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQ 233 + P+ PS +P D P + P G + +F ++ Y + Sbjct: 208 YLHALAPL-PSKRLVPLPSLEDLGFAPSNLAEVAMPTGSSGGQALFEEFTS-RMGDYGRR 265 Query: 234 RDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRH 293 RD PA++G S LS +L G +S R R V +GA +WL+EL+WR+FY Sbjct: 266 RDYPALRGPSYLSVHLRFGTVSIRTL-ARAAHGAVLRGGADSAGAATWLSELVWRDFYFM 324 Query: 294 LMAFYPSVCMGKPFIPWTEKIEW---NKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMH 350 ++ +P V G+ F P + I W ++W+ TG+P++DAAM Q+ G+MH Sbjct: 325 ILHHHPRVAAGEAFHPAYDIIRWRDGETGDRYFESWRDAATGYPLVDAAMLQIRQSGYMH 384 Query: 351 NRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFN 410 NRLRM+TASFLVKDL VDWR GE YF QL D D A+NNGGWQWAASTG D+ P+FRIFN Sbjct: 385 NRLRMVTASFLVKDLGVDWRRGEHYFADQLNDFDFAANNGGWQWAASTGCDAQPWFRIFN 444 Query: 411 PTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSL--------NYPLPIVD 462 P Q ++FDPQG FIR +LP+L +P +Y+HAP W D+ L NYP P+V Sbjct: 445 PVTQSEKFDPQGRFIRKYLPQLAALPDKYVHAP--WTAPQDVLLAAGVRLGENYPRPLVQ 502 Query: 463 HKKACHHTLNQYYAAKK 479 H A TL +Y K+ Sbjct: 503 HDVARKETLERYAVVKE 519 >gi|284800868|ref|YP_003412733.1| hypothetical protein LM5578_0616 [Listeria monocytogenes 08-5578] gi|284994054|ref|YP_003415822.1| hypothetical protein LM5923_0615 [Listeria monocytogenes 08-5923] gi|284056430|gb|ADB67371.1| hypothetical protein LM5578_0616 [Listeria monocytogenes 08-5578] gi|284059521|gb|ADB70460.1| hypothetical protein LM5923_0615 [Listeria monocytogenes 08-5923] Length = 467 Score = 286 bits (732), Expect = 5e-75, Method: Compositional matrix adjust. Identities = 171/483 (35%), Positives = 252/483 (52%), Gaps = 39/483 (8%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSH-FIYASLLQVQ 69 ++W R DLR+ DNKALY AC D ++ +F P Q+ I+ SH +AS+ + Sbjct: 4 VMWFRRDLRVNDNKALYHACKEDD--LLLLFQVNPAQF----ITGSPSHQAFFASVAHFK 57 Query: 70 KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVT------KLFYNRQYEINEVRRDKLL 123 + + + H F + IE C QQ K+++N +RD+ Sbjct: 58 QEVDKTA-----HLQIMFGEPIE-----CFQQLKDTLPSWDKVYFNLDETGYGAKRDEAA 107 Query: 124 EKRL-QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAI 182 + + ++ ++F DS L + + YK++TP+ K + + + + P Sbjct: 108 QAFFDEQKIEVQAFHDSYLHSAEEVKKSPTEYYKIFTPYYKKWREEIKETPFKMTLKPEN 167 Query: 183 RLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGT 242 + P +F + P+ GE+ A L F K + Y + RD P + T Sbjct: 168 IWKESLFPKYEEQFAEMTCDL--PILDSGERAANTRLANFIKHDIADYDKARDFPELDKT 225 Query: 243 SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVC 302 S LS YL G +S R W L+E + G + EL WR+FY + +P+ Sbjct: 226 SHLSRYLRTGEISVRTIWQALQEN------EATEGRAIFEKELCWRDFYNMIYVSFPNQ- 278 Query: 303 MGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLV 362 +P IEW + +AW+ G TGFP++DAAMRQL GWMHNRLRM+TASFL Sbjct: 279 KNEPIQENYRFIEWENNREFFKAWQDGKTGFPLVDAAMRQLKETGWMHNRLRMVTASFLT 338 Query: 363 KDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQG 422 KDLL+DWR GE+YF L+D D ASN GGWQWAASTG D+VPYFRIFNPT Q ++FDP G Sbjct: 339 KDLLIDWRFGEKYFQQMLIDYDPASNIGGWQWAASTGTDAVPYFRIFNPTTQSQKFDPTG 398 Query: 423 TFIRHWLPELNNVPTQYIHAPH--SWLDKNDLSL----NYPLPIVDHKKACHHTLNQYYA 476 FIR ++ EL N+P ++IH P S +++ + L +YP P++DHK+ + +Y Sbjct: 399 KFIRKYVKELANLPDKFIHQPEKMSEIEQKEYGLLLGKDYPFPLIDHKERRKLAIARYEF 458 Query: 477 AKK 479 +K+ Sbjct: 459 SKE 461 >gi|330824678|ref|YP_004387981.1| deoxyribodipyrimidine photo-lyase [Alicycliphilus denitrificans K601] gi|329310050|gb|AEB84465.1| Deoxyribodipyrimidine photo-lyase [Alicycliphilus denitrificans K601] Length = 491 Score = 286 bits (732), Expect = 5e-75, Method: Compositional matrix adjust. Identities = 185/499 (37%), Positives = 264/499 (52%), Gaps = 49/499 (9%) Query: 6 AMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFI-------ATPEQWRQHGISARQS 58 A + LVWLR DLR D+ ALY A +V F+ A P + S R+ Sbjct: 5 ATASALVWLRRDLRCDDHAALYHALRRF-GRVYCAFVFDTDILDALPTR------SDRRV 57 Query: 59 HFIYASLLQVQKSLSQ---------KGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYN 109 FI+AS+L++ + L++ G++ ++ + E + V ++ N Sbjct: 58 EFIHASVLELHQGLAELAARSGAPGGGLIVRH------GPAPECIVRLARSLGVQEVLAN 111 Query: 110 RQYEINEVRRDKLLEKRLQHRVICKS-FDDSVLLPPGSILNHALQMYKVYTPFRKALIQN 168 R YE + RD+ + + LQ I S + D LL +L + Y V+TP+R+A +Q Sbjct: 112 RDYEPQAIERDRRVARALQAAGIAFSDYKDQALLDRDEVLTRQGRPYGVFTPYRRAWLQR 171 Query: 169 LVQADLRSLPVP--AIRLTGPVTPSNIPRFFDYPFQAID----PMFPIGEQNALHILRKF 222 L L PV A L P +P + F + P+ P G + A +L+ F Sbjct: 172 LDAFQLTPYPVASHARHLAAPPAGECLPTLQELGFARTNLHELPL-PTGMRGAQLLLQDF 230 Query: 223 CKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWL 282 Y+ E RD P +G S LS +L G +S RQ L + GA +WL Sbjct: 231 MPRMAAYH-EARDYPGRKGVSYLSVHLRFGTVSIRQ----LAALAAAQAAQGCEGAQAWL 285 Query: 283 NELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQ 342 +EL WR+FY ++ +P V + F P ++++W+ L QAW TG+P++DAAMRQ Sbjct: 286 SELAWRDFYFMILWHHPQVAT-QSFKPVYDRVQWDDAPELWQAWCGARTGYPLVDAAMRQ 344 Query: 343 LNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDS 402 L+ G+MHNRLRM+ ASFL KDL +DWR GE +F + L D DLA+NNGGWQWAASTG D+ Sbjct: 345 LHQTGYMHNRLRMVVASFLTKDLGLDWRRGERHFAAHLNDYDLAANNGGWQWAASTGCDA 404 Query: 403 VPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKN------DLSLNY 456 P+FRIFNP Q +RFDPQG FIR +LPEL VP +IH P + L ++Y Sbjct: 405 QPWFRIFNPVTQSQRFDPQGRFIRCYLPELARVPDAHIHFPAAMGPLELAACGLRLGVDY 464 Query: 457 PLPIVDHKKACHHTLNQYY 475 PLP+VDH +A TL +++ Sbjct: 465 PLPVVDHARARERTLMRFH 483 >gi|319762589|ref|YP_004126526.1| deoxyribodipyrimidine photo-lyase [Alicycliphilus denitrificans BC] gi|317117150|gb|ADU99638.1| Deoxyribodipyrimidine photo-lyase [Alicycliphilus denitrificans BC] Length = 491 Score = 286 bits (731), Expect = 7e-75, Method: Compositional matrix adjust. Identities = 184/499 (36%), Positives = 264/499 (52%), Gaps = 49/499 (9%) Query: 6 AMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFI-------ATPEQWRQHGISARQS 58 A + LVWLR DLR D+ ALY A +V F+ A P + S R+ Sbjct: 5 ATASALVWLRRDLRCDDHAALYHALRRF-GRVYCAFVFDTDILDALPTR------SDRRV 57 Query: 59 HFIYASLLQVQKSLSQ---------KGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYN 109 FI+AS+L++ + L++ G++ ++ + E + V ++ N Sbjct: 58 EFIHASVLELHQGLAELAARSGAPGGGLIVRH------GPAPECIVRLARSLGVQEVLAN 111 Query: 110 RQYEINEVRRDKLLEKRLQHRVICKS-FDDSVLLPPGSILNHALQMYKVYTPFRKALIQN 168 R YE + RD+ + + LQ I S + D LL +L + Y V+TP+R+A +Q Sbjct: 112 RDYEPQAIERDRRVARALQAAGIAFSDYKDQALLDRDEVLTRQGRPYGVFTPYRRAWLQR 171 Query: 169 LVQADLRSLPVP--AIRLTGPVTPSNIPRFFDYPFQAID----PMFPIGEQNALHILRKF 222 L L PV A L P +P + F + P+ P G + A +L+ F Sbjct: 172 LDAFQLTPYPVASHARHLAAPPAGECLPTLQELGFARTNLHELPL-PTGMRGAQQLLQDF 230 Query: 223 CKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWL 282 Y+ E RD P +G S LS +L G +S RQ L + GA +WL Sbjct: 231 MPRMAAYH-EARDYPGRKGVSYLSVHLRFGTVSIRQ----LAALAAAQAAQGCEGAQAWL 285 Query: 283 NELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQ 342 +EL WR+FY ++ +P V + F P ++++W+ L QAW TG+P++DAAMRQ Sbjct: 286 SELAWRDFYFMILWHHPQVAT-QSFKPVYDRVQWDDAPELWQAWCGARTGYPLVDAAMRQ 344 Query: 343 LNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDS 402 L+ G+MHNRLRM+ ASFL KDL +DWR GE +F + L D DLA+NNGGWQWAASTG D+ Sbjct: 345 LHQTGYMHNRLRMVVASFLTKDLGLDWRRGERHFAAHLNDYDLAANNGGWQWAASTGCDA 404 Query: 403 VPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKN------DLSLNY 456 P+FRIFNP Q ++FDPQG FIR +LPEL VP +IH P + L ++Y Sbjct: 405 QPWFRIFNPVTQSQKFDPQGRFIRCYLPELARVPDAHIHFPAAMGPLELAACGLRLGVDY 464 Query: 457 PLPIVDHKKACHHTLNQYY 475 PLP+VDH +A TL +++ Sbjct: 465 PLPVVDHARARERTLMRFH 483 >gi|296159661|ref|ZP_06842484.1| Deoxyribodipyrimidine photo-lyase [Burkholderia sp. Ch1-1] gi|295890105|gb|EFG69900.1| Deoxyribodipyrimidine photo-lyase [Burkholderia sp. Ch1-1] Length = 499 Score = 285 bits (730), Expect = 8e-75, Method: Compositional matrix adjust. Identities = 180/497 (36%), Positives = 263/497 (52%), Gaps = 47/497 (9%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATP-------EQWRQHGISA----RQSH 59 LVWLR DLR TDN ALY A + + +V VF+ + W R+ Sbjct: 15 LVWLRRDLRNTDNAALYYALKHCE-RVWCVFVFDTTILQPLVDAWHARHPDTQPQDRRIE 73 Query: 60 FIYASLLQVQKSL--SQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEV 117 FI A+L ++ ++L G++ Y ++ + + + +F N YE + Sbjct: 74 FILAALGELDEALRTDGGGLIVLYGNPADL------VPTLADELGADAVFANHDYEPVAI 127 Query: 118 RRDKLLEKRL-QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRS 176 RD+ + ++L + +F D V+ +L + + V+TP+R A ++ L DL+ Sbjct: 128 ERDETVREQLAEAGRQWLTFKDQVIFERDEVLTGQSKPFTVFTPYRNAWLRQLSTFDLKP 187 Query: 177 LPVPAIRLTGPVTPSNIPRFFDY-------PFQAIDPMFPIGEQNALHILRKFCKEKVYY 229 PV PS + R P + P G A +L F ++ Sbjct: 188 YPVETYAKHLAALPSRLDRQLPTLEQLGFAPSNLGELSLPTGMSGAQRLLDDFMT-RIDS 246 Query: 230 YVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKS-GAFSWLNELIWR 288 Y ++RD PA +G S LS +L G +S R RL E L ++P G+ +WL+ELIWR Sbjct: 247 YADRRDFPAAKGPSYLSIHLRFGTVSIRTL-ARLAHE---LSLQPDGQGSATWLSELIWR 302 Query: 289 EFYRHLMAFYPSVCMGKPFIPWTEKIEWNKD---SHLLQAWKQGYTGFPIIDAAMRQLNT 345 +FY ++A +P + G F +++ W + AW G TG+P++DAAM QLN Sbjct: 303 DFYFMILAHHPRLARGASFKEEYDRLRWEQGPEADEAFAAWCDGRTGYPLVDAAMLQLNR 362 Query: 346 IGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPY 405 G+MHNRLRM+TASFLVKDL VDWR+GE YF QL D D ++NNGGWQWAASTG D+ PY Sbjct: 363 TGYMHNRLRMVTASFLVKDLGVDWRLGERYFAEQLNDFDFSANNGGWQWAASTGCDAQPY 422 Query: 406 FRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND--------LSLNYP 457 FRIFNP Q ++FD +G FI+ +LP+L +P+++IHAP WL + L +YP Sbjct: 423 FRIFNPVTQSEKFDAEGRFIKRYLPQLAKLPSKWIHAP--WLAGAERLAECGVVLGKDYP 480 Query: 458 LPIVDHKKACHHTLNQY 474 PIVDH +A TL ++ Sbjct: 481 APIVDHAEARARTLARF 497 >gi|257868228|ref|ZP_05647881.1| deoxyribodipyrimidine photo-lyase type I [Enterococcus casseliflavus EC30] gi|257874499|ref|ZP_05654152.1| deoxyribodipyrimidine photo-lyase type I [Enterococcus casseliflavus EC10] gi|257802342|gb|EEV31214.1| deoxyribodipyrimidine photo-lyase type I [Enterococcus casseliflavus EC30] gi|257808663|gb|EEV37485.1| deoxyribodipyrimidine photo-lyase type I [Enterococcus casseliflavus EC10] Length = 469 Score = 285 bits (730), Expect = 9e-75, Method: Compositional matrix adjust. Identities = 182/493 (36%), Positives = 259/493 (52%), Gaps = 58/493 (11%) Query: 11 LVWLRNDLRITDNKALYAACHN--SDAKVIAVFIATPEQWRQHGIS-----ARQSHFIYA 63 ++W R DLR+ DN AL A + ++ +++ VF +Q+ S + +HFI A Sbjct: 1 MMWFRKDLRLEDNTALTEALASLQANDQLLCVFHLNDKQFLPDAPSHDYFFSAVAHFIEA 60 Query: 64 SLLQ-VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKL 122 + Q + L + + Q F EW ++L++N +RD Sbjct: 61 AKKQNLTIHLLTGTLTEAFDQL--FACYPEW----------SQLYFNFDNRGYGRKRDLY 108 Query: 123 LEKRLQHR-VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPA 181 + + ++ + + SF+D L P + YK +TP+ K IQ LP P Sbjct: 109 ITELVEQKGITVHSFEDHHLHQPTEVTKEDGTYYKKFTPYYKKWIQ---------LPKPV 159 Query: 182 IRLTGPVTPSNIPRFFDYP-FQA-------------IDPMFPIGEQNALHILRKFCKEKV 227 + + F D P F+A D +GE A L+ F ++++ Sbjct: 160 YQ-KHALDFEKAAHFNDAPHFKAGTMLLAELIKNRKTDFSTIVGEDYAHKQLQAFVQKRL 218 Query: 228 YYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIW 287 Y + RDIP+I+GTS+LSP+LS G +S R+ W +E + +G ++L EL W Sbjct: 219 AAYEKDRDIPSIKGTSRLSPFLSFGQISIRKVWAACQE------MPSSTGKATFLKELAW 272 Query: 288 REFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIG 347 R+FY H++ F I ++W KD L W+ G TG+PIIDAAMRQLN G Sbjct: 273 RDFY-HMIYFTHPEQKNYELIEKYRNMDWQKDEEALNKWQAGQTGYPIIDAAMRQLNQTG 331 Query: 348 WMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFR 407 WMHNRLRMI ASFL KDLL+DWR GE YF QL+D D ASN GGWQWAASTG D+VPYFR Sbjct: 332 WMHNRLRMIVASFLTKDLLIDWRQGEAYFARQLIDYDAASNIGGWQWAASTGTDAVPYFR 391 Query: 408 IFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND------LSLNYPLPIV 461 IFNP QGK+FD GTFI+ ++PEL +P +++H P+ ++ L +YPLPIV Sbjct: 392 IFNPITQGKKFDKDGTFIKQFVPELAQLPLKFVHEPYLMTNQEQADLQIVLGTDYPLPIV 451 Query: 462 DHKKACHHTLNQY 474 DH +A L+ Y Sbjct: 452 DHNEARKRALDLY 464 >gi|218246283|ref|YP_002371654.1| Deoxyribodipyrimidine photo-lyase [Cyanothece sp. PCC 8801] gi|218166761|gb|ACK65498.1| Deoxyribodipyrimidine photo-lyase [Cyanothece sp. PCC 8801] Length = 481 Score = 285 bits (730), Expect = 9e-75, Method: Compositional matrix adjust. Identities = 181/491 (36%), Positives = 258/491 (52%), Gaps = 43/491 (8%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 L W R DLRI+DN L A S +KV+ +F Q+ I+ + ++ L ++Q+ Sbjct: 6 LFWHRKDLRISDNIGLAKARQKS-SKVVGIFCFDSNILEQNDIAPVRIAYLIGCLQELQQ 64 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKL-----FYNRQYEINEVRRDKLLEK 125 + + G + Q S+ + Q L F+N E RRD+ + + Sbjct: 65 TYQKLGSNLLFIQGE---------PSHIIPQLAAVLDAEAVFWNLDVEPYSQRRDEQVIQ 115 Query: 126 RLQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPF--------RKALIQNLVQADLRS 176 L+ + I +++ D +L PG I+ + + YKVYTPF + ++ NL L Sbjct: 116 ALKEQGIKTQTYWDQLLHYPGEIVTKSGEPYKVYTPFWKNWELQSKDSITNNL--ESLEG 173 Query: 177 LPVPAIRLTGPVTPSNIPRF------FDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYY 230 L ++ V ++P +DYP + GE A L FC + Y Sbjct: 174 LTQTELQQAKNVNIIDLPTVQELGYRWDYPL-----ILSPGETAAAERLDYFCDAAINEY 228 Query: 231 VEQRDIPAIQGTSQLSPYLSIGVLSPRQCWN-RLKEEFVDLLIKPKSGAFSWLNELIWRE 289 EQR+ PAI+GTSQLSP L GV+ R W LK + + +W EL WRE Sbjct: 229 QEQRNFPAIEGTSQLSPALKFGVIGIRTVWQATLKAMENSRSDEVRESIVTWQKELAWRE 288 Query: 290 FYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWM 349 FY+H + F+P + G P+ + W+ + L QAW +G TG+PI+DAAMRQLN GWM Sbjct: 289 FYQHCLYFFPELAEG-PYREDFQDFPWDNNEVLFQAWCEGKTGYPIVDAAMRQLNETGWM 347 Query: 350 HNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIF 409 HNR RMI ASFL KDL+++W+ GE+YFM L+DGDLA+NNGGWQW+AS+G D P RIF Sbjct: 348 HNRCRMIVASFLTKDLMINWQWGEKYFMQTLIDGDLAANNGGWQWSASSGMDPKP-LRIF 406 Query: 410 NPTIQGKRFDPQGTFIRHWLPELNNVPTQY-IHAPHSWLDKNDLSLNYPLPIVDHKKACH 468 NP Q ++FDP +IR WLPEL ++ T+ + S LD LS YP PIV+H + Sbjct: 407 NPASQAQKFDPDADYIRQWLPELRSLDTEVLVTGKISPLDC--LSCGYPQPIVNHNQQQR 464 Query: 469 HTLNQYYAAKK 479 +Y K+ Sbjct: 465 EFKRRYSQVKQ 475 >gi|209549047|ref|YP_002280964.1| deoxyribodipyrimidine photo-lyase [Rhizobium leguminosarum bv. trifolii WSM2304] gi|209534803|gb|ACI54738.1| Deoxyribodipyrimidine photo-lyase [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 483 Score = 285 bits (730), Expect = 9e-75, Method: Compositional matrix adjust. Identities = 177/497 (35%), Positives = 266/497 (53%), Gaps = 33/497 (6%) Query: 3 ATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIY 62 A A+ ++W R DLR+ DN+AL AA H S +I V+I P + A Q+ +++ Sbjct: 2 AKDAVKPVILWFRRDLRLDDNQALNAA-HLSGRPIIPVYINEPAAAGTGPLGAAQAWWLH 60 Query: 63 ASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKL 122 SL + +SL ++ Q D++E L + + +F+NR+Y+ + + D Sbjct: 61 HSLEALDRSLHER----QGELVLASGDALEVLRAVIKKSGAEAVFWNRRYDPSGISVDTH 116 Query: 123 LEKRLQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPA 181 +++ L+ + I +SF +L P ++ Y+VYTPF +AL + +A+ L PA Sbjct: 117 IKQELEKQAIEARSFGGQLLHEPSRLMTGNGTPYRVYTPFWRAL-EGAGEAEP-PLEAPA 174 Query: 182 -IRLTGPVTPSN-------IPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQ 233 +RL S +P D+ D P GEQ A L F ++++ Y E Sbjct: 175 KLRLASQRPASETLKSWKLLPTKPDWAKGFADLWTP-GEQGARERLSAFVEDELKGYKEN 233 Query: 234 RDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRH 293 RD PA TS LSP+L++G +SP + W+ + + P + + E+ WREF H Sbjct: 234 RDYPAKPATSMLSPHLALGEISPARIWDATRGLSNRV---PAADIVHFRKEIAWREFSYH 290 Query: 294 LMAFYPSVCMGKPFIPWTEKIE---WNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMH 350 L+ +P + W ++ + W D +AW++G TG+PI+DA MRQL GWMH Sbjct: 291 LLFHFPRLASEN----WNDRFDGFKWRNDDGDFEAWRRGMTGYPIVDAGMRQLWRHGWMH 346 Query: 351 NRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFN 410 NR+RMI ASFL+KDL++DWR GE +F L+D D A+N WQW A +G D+ P+FRIFN Sbjct: 347 NRVRMIVASFLIKDLMIDWRDGEAWFRDTLVDADPANNAASWQWVAGSGADASPFFRIFN 406 Query: 411 PTIQGKRFDPQGTFIRHWLPELNNVPTQYIH----APHSWLDKNDLSLN--YPLPIVDHK 464 P +QG+ FDP G ++R +PEL + +YIH AP S LD+ + L YP PIVDH Sbjct: 407 PMLQGETFDPDGDYVRAHVPELQRLGAKYIHRPFEAPKSALDEAGIILGQTYPKPIVDHA 466 Query: 465 KACHHTLNQYYAAKKQS 481 A L Y A K + Sbjct: 467 SARDRALAAYKATKDAA 483 >gi|254422518|ref|ZP_05036236.1| deoxyribodipyrimidine photolyase family [Synechococcus sp. PCC 7335] gi|196190007|gb|EDX84971.1| deoxyribodipyrimidine photolyase family [Synechococcus sp. PCC 7335] Length = 480 Score = 285 bits (729), Expect = 1e-74, Method: Compositional matrix adjust. Identities = 181/488 (37%), Positives = 250/488 (51%), Gaps = 31/488 (6%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 L W R DLRI DN L AA KV+ VF P I+ + ++ SL ++Q+ Sbjct: 7 LFWHRRDLRIRDNLGL-AAARKRTPKVVGVFCLDPGILNGDDIAPARVSYMIGSLAELQE 65 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130 + G + +++I L S +++NR E RD + L+ R Sbjct: 66 NYQSAGSELLILK-GKPEEAIPNLASAL---GAAAVYWNRDVEPYARERDPNVASALKDR 121 Query: 131 VICKSFD--DSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188 I S D +LLPP ++ A + YKVYTPF + I+ Q + Sbjct: 122 DIESSTQYWDQLLLPPDALKTGAGEPYKVYTPFWRKWIRQEKQPPASTFAAATGLSPHEK 181 Query: 189 TPSNIPRFFDYPFQAI-------DPMFPIGEQNALHILRKFCKEK--VYYYVEQRDIPAI 239 + +N D P + + GE AL L KFC ++ + Y +QRD P+I Sbjct: 182 SLANKAGNIDLPTAKALGYEWENELLLQPGEAAALAQLEKFCDDRRVIAEYDQQRDYPSI 241 Query: 240 QGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAF-----SWLNELIWREFYRHL 294 GTS LS L G L R W E D + +S +W EL WREFY+ + Sbjct: 242 AGTSTLSAALKFGTLGIRTVW----EAASDAYSRARSEETHRNIRTWQQELAWREFYQSV 297 Query: 295 MAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLR 354 M +P++ G P+ + W+ D L QAW +G TG+PI+DAAMRQLN GWMHNR R Sbjct: 298 MYTFPNLAEG-PYREPLKDFPWDNDEDLFQAWCEGKTGYPIVDAAMRQLNQTGWMHNRCR 356 Query: 355 MITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQ 414 MI ASFL KDL++DWR GE+YFM L DGDL++NNGGWQW+AS+G D P RIFNP Q Sbjct: 357 MIVASFLTKDLIIDWRWGEKYFMQHLFDGDLSANNGGWQWSASSGMDPKP-LRIFNPASQ 415 Query: 415 GKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDL-SLNYPLPIVDHKKACHHTLNQ 473 K++DP+ +IR WLPE+ ++ T + + +D NDL YP +VDHK+ + Sbjct: 416 AKKYDPEAEYIREWLPEIRHLDTGALVSGK--IDSNDLEGTGYPCKVVDHKEQ-QAIFKE 472 Query: 474 YYAAKKQS 481 Y A+K S Sbjct: 473 RYKAQKAS 480 >gi|83858274|ref|ZP_00951796.1| Deoxyribodipyrimidine photolyase [Oceanicaulis alexandrii HTCC2633] gi|83853097|gb|EAP90949.1| Deoxyribodipyrimidine photolyase [Oceanicaulis alexandrii HTCC2633] Length = 480 Score = 285 bits (729), Expect = 1e-74, Method: Compositional matrix adjust. Identities = 179/483 (37%), Positives = 263/483 (54%), Gaps = 29/483 (6%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFI---ATPEQWRQHGISARQSHFIYASLLQ 67 +VW R DLR+ DN AL AA A VI V+I P WR G S +++ SL Sbjct: 9 IVWFRQDLRLADNPALQAAAATG-APVIPVYILDDDAPGDWRPGGAS---RWWLHHSLAS 64 Query: 68 VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127 + L Q G + ++ E LD+ Q +F+NR YE +RD+ ++ L Sbjct: 65 LASDLQQLGGELALMKG----EAQEQLDALIEQTGADTVFWNRLYEPWARKRDEAIKSSL 120 Query: 128 QHR-VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 + R V +SF+ S+++ P I YKV+TPF K+L + A+ P A++L Sbjct: 121 KDRGVRARSFNGSLIVEPWDIATKTGNPYKVFTPFWKSLKADHTPAEPTGRP-DALQLHA 179 Query: 187 PVTPSNIPRFFDYPFQ-----AIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQG 241 ++ P + + + GE A L +F K V Y ++RD+P G Sbjct: 180 HEGGLSLDDLDLLPTKPDWSGGLQENWTPGEAAAHGRLGQFLKAAVSDYSDRRDLPGQSG 239 Query: 242 TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSV 301 TS+LSP+L G +SPRQ W+ +K+ GA ++L+E+ WREF +L+ +P + Sbjct: 240 TSRLSPHLHFGEISPRQVWHAVKQSD----HARTGGADTYLSEIAWREFSYNLLYHFPDL 295 Query: 302 CMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFL 361 F + EW++ L+AW++G TG+PI+DA MR+L GWMHNR+RMI ASFL Sbjct: 296 PEAN-FQSKFDAFEWDECEDKLKAWQKGQTGYPIVDAGMRELWATGWMHNRVRMIVASFL 354 Query: 362 VKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQ 421 +KDL + WR GE++F L+D DLASN WQW A +G D+ PYFR+FNP Q ++FDP+ Sbjct: 355 IKDLFIHWRRGEDWFWDTLVDADLASNAASWQWTAGSGADAAPYFRVFNPVGQSEKFDPK 414 Query: 422 GTFIRHWLPELNNVPTQYIHAP----HSWLDKNDLSLN--YPLPIVDHKKACHHTLNQYY 475 G ++R W+PEL ++P + IHAP S L + ++L YP PIVDH +A L + Sbjct: 415 GDYLRKWIPELADLPDKVIHAPWTAEKSVLSRAGVTLGETYPEPIVDHGEARKRALAAFE 474 Query: 476 AAK 478 K Sbjct: 475 KIK 477 >gi|241204354|ref|YP_002975450.1| deoxyribodipyrimidine photo-lyase [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240858244|gb|ACS55911.1| Deoxyribodipyrimidine photo-lyase [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 482 Score = 285 bits (728), Expect = 1e-74, Method: Compositional matrix adjust. Identities = 171/501 (34%), Positives = 261/501 (52%), Gaps = 42/501 (8%) Query: 3 ATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIY 62 A A ++W R DLR+ DN+AL AA H S +I ++I P + A Q+ +++ Sbjct: 2 AKDAAKPVILWFRKDLRLDDNQALTAA-HRSGRPIIPLYIREPAAAGTGPLGAAQAWWLH 60 Query: 63 ASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKL 122 SL + +SL + +++E L ++ + +F+NR+Y+ + D Sbjct: 61 HSLEALNRSLQK----LNGRLVLASGEALEVLCAFIKESAAEAVFWNRRYDPAGISIDAR 116 Query: 123 LEKRLQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNL-------VQADL 174 ++ L+ + I +SF +L P ++ Y+VYTPF +AL A L Sbjct: 117 IKHELEKQAIEARSFGGQLLHEPSRLMTGNGTPYRVYTPFWRALEGGGEPEPPLDAPAKL 176 Query: 175 RSLPVPAIRLTG-----PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYY 229 R P + G P P F D ++ GE+ A L F ++ + Sbjct: 177 RLASQPKSEVLGSWKLLPTKPDWAGDFVD--------LWTPGEEGAQQRLHVFVEDALEG 228 Query: 230 YVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWRE 289 Y E RD PA TS LSP+L++G +SP + W+ + + P + + E+ WRE Sbjct: 229 YKENRDYPARPATSMLSPHLALGEISPARIWDATRGLSQRV---PAADIVHFREEIAWRE 285 Query: 290 FYRHLMAFYPSVCMGKPFIPWTEKI---EWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTI 346 F HL+ +P + W ++ EW +S +AW++G TG+PI+DA MRQL Sbjct: 286 FSYHLLFHFPRLASAN----WNDRFDGFEWRNNSGDFEAWRRGMTGYPIVDAGMRQLWRH 341 Query: 347 GWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYF 406 GWMHNR+RMI ASFL+KDL++DWR GE +F L+D D A+N WQW A +G D+ P+F Sbjct: 342 GWMHNRVRMIVASFLIKDLMIDWRRGEAWFRDTLVDADPANNAASWQWVAGSGADASPFF 401 Query: 407 RIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIH----APHSWLDKNDLSLN--YPLPI 460 RIFNP +QG++FDP G ++R ++PEL + +YIH AP S LD+ ++L YP PI Sbjct: 402 RIFNPVLQGEKFDPDGDYVRTYVPELRELGPKYIHRPFEAPKSMLDEAGITLGQTYPKPI 461 Query: 461 VDHKKACHHTLNQYYAAKKQS 481 VDH A + L Y A + + Sbjct: 462 VDHASARNRALAAYKAIRDAA 482 >gi|288553212|ref|YP_003425147.1| deoxyribodipyrimidine photolyase PhrB [Bacillus pseudofirmus OF4] gi|298286845|sp|Q04449|PHR_BACPE RecName: Full=Deoxyribodipyrimidine photo-lyase; AltName: Full=DNA photolyase; AltName: Full=Photoreactivating enzyme gi|288544372|gb|ADC48255.1| Deoxyribodipyrimidine photolyase, FAD-binding PhrB [Bacillus pseudofirmus OF4] Length = 479 Score = 284 bits (727), Expect = 2e-74, Method: Compositional matrix adjust. Identities = 179/488 (36%), Positives = 254/488 (52%), Gaps = 45/488 (9%) Query: 8 SVHLVWLRNDLRITDNKAL---YAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYAS 64 S+ VW R D R+ D+ AL A K +A F P + + + + + Sbjct: 6 SLKAVWFRRDFRLHDHTALKHAIEAIEKHGGKWLAFFYLDP---KTASVEPVHHDYFFQT 62 Query: 65 LLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQ--RVTKLFYNRQYEINEVRRDKL 122 ++Q ++ L G +IE S LQ + ++ N + RD+ Sbjct: 63 VMQFKQMLKTNG-----GDLYIITGTIEGALSKLLQAFPEIDAVYANDDRVGDGRLRDEA 117 Query: 123 LEKRLQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQN------LVQADLR 175 E L + I +F+D+ L P +L YKV+TP+ KA + +++ D+ Sbjct: 118 AEHFLAKQSIPFYTFEDAYLTEPDQVLKKDGTPYKVFTPYYKAWAKERKRTPAVIKRDV- 176 Query: 176 SLPVPAIRLTGPVTPS-----NIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYY 230 L + T P + N+ + Y + A IGE++A+ L+ F K+++ Y Sbjct: 177 -LLGSVHKGTAPDREAETLFNNLIKKCSYDWSA------IGEEHAIKRLQMFTKKRLSGY 229 Query: 231 VEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREF 290 RD P+I GTS+LSPY+ G +S R + + D A ++L EL WR+F Sbjct: 230 KANRDFPSITGTSRLSPYIKTGAVSSRSIYYHILNAEAD-----SYSAETFLKELAWRDF 284 Query: 291 YRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMH 350 YR ++ FY C + + ++ W+ D L +WK+G TGFPI+DA MRQL GWMH Sbjct: 285 YR-MVHFYEPDCKDREIMEGYRELNWSHDQDDLTSWKRGETGFPIVDAGMRQLLNEGWMH 343 Query: 351 NRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFN 410 NRLRMITASFL KDLL+DWR+GE YF L+D D +SN GGWQWAAS G D+VPYFRIFN Sbjct: 344 NRLRMITASFLTKDLLIDWRLGERYFERMLIDYDPSSNIGGWQWAASVGTDAVPYFRIFN 403 Query: 411 PTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND------LSLNYPLPIVDHK 464 P Q KRFD GT+IR ++PELN+VP YIH P ++ L +YPLPIVDH Sbjct: 404 PVTQSKRFDENGTYIRTYIPELNHVPDHYIHEPWKMSEEEQVKYKCRLDEDYPLPIVDHS 463 Query: 465 KACHHTLN 472 K L+ Sbjct: 464 KQRKKALS 471 >gi|86605487|ref|YP_474250.1| deoxyribodipyrimidine photolyase [Synechococcus sp. JA-3-3Ab] gi|86554029|gb|ABC98987.1| deoxyribodipyrimidine photolyase [Synechococcus sp. JA-3-3Ab] Length = 479 Score = 284 bits (727), Expect = 2e-74, Method: Compositional matrix adjust. Identities = 173/481 (35%), Positives = 256/481 (53%), Gaps = 19/481 (3%) Query: 8 SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67 S+ L+W R DLR+ DN AL+ A S +V+ VF+ P+ ++ ++ + F+ +L + Sbjct: 3 SLVLLWHRRDLRLGDNTALHGAAQRS-PQVVPVFVFDPQLLQRADMAPARVAFLLQALQE 61 Query: 68 VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127 +Q+ +Q GI + + D ++E L + +F+N + +++ + L Sbjct: 62 LQERYAQMGIPLLWRRG---DPAVE-LRQLAAELGAQAVFWNEDLDPWARQQESRVRASL 117 Query: 128 QHRVICK-SFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVP-AIRLT 185 I S+ D +L PG +L A + Y V+TPF + +L + D P+P +++ Sbjct: 118 AEAGIPSFSYQDMLLHGPGEVLTQAGEPYSVFTPFWRRW-SSLPKPD--PFPIPKSLQAV 174 Query: 186 GPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKE-KVYYYVEQRDIPAIQGTSQ 244 + +P D F + GE A +L FC+ +++ Y RD PA QGTS Sbjct: 175 SSLKAQPLPSLADLGFVCNQRIPAAGESVAQGLLEDFCQGLRIFEYGRARDFPAEQGTSL 234 Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAF-SWLNELIWREFYRHLMAFYPSVCM 303 LSP+L G + R+ W E + + + +W EL WREFY+H++ +P V Sbjct: 235 LSPHLCWGTIGIRRVWQATCEVEAEARSEEAESSLKTWRQELCWREFYKHVLVHWPHVES 294 Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363 G + + +EW+ QAW G TG+PI+DAAMRQLN GWMHNR RMI ASFL K Sbjct: 295 GA-YRRAFDALEWDNRQDWFQAWCAGQTGYPIVDAAMRQLNETGWMHNRCRMIVASFLTK 353 Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423 DLL+DWR GE YFM +L+DGDLA+NNGGWQW+A G D P RIFNP Q R+DP+G Sbjct: 354 DLLIDWRWGERYFMQKLVDGDLAANNGGWQWSAGVGTDPRP-LRIFNPATQAARYDPEGE 412 Query: 424 FIRHWLPELNNVPTQYI-----HAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478 +IR +LPEL + T + SW + YP PIVDHK +Y A + Sbjct: 413 YIRRYLPELAGLDTPALLWVGDDPKGSWALQERRRCGYPDPIVDHKVQQQEFKRRYQAVQ 472 Query: 479 K 479 + Sbjct: 473 Q 473 >gi|257059330|ref|YP_003137218.1| deoxyribodipyrimidine photo-lyase [Cyanothece sp. PCC 8802] gi|256589496|gb|ACV00383.1| Deoxyribodipyrimidine photo-lyase [Cyanothece sp. PCC 8802] Length = 481 Score = 284 bits (727), Expect = 2e-74, Method: Compositional matrix adjust. Identities = 179/491 (36%), Positives = 255/491 (51%), Gaps = 43/491 (8%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 L W R DLRI+DN L A S +KV+ +F + I+ + ++ L ++Q+ Sbjct: 6 LFWHRKDLRISDNVGLAKARQES-SKVVGIFCFDSNILERDDIAPARIAYLLGCLQELQQ 64 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKL-----FYNRQYEINEVRRDKLLEK 125 + + G + Q S+ + Q L F+N E RRD+ + + Sbjct: 65 TYQKLGSNLLFIQGE---------PSHIIPQLAAVLDAEAVFWNLDVEPYSQRRDEQVIQ 115 Query: 126 RLQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKAL--------------IQNLV 170 L+ + I +++ D +L PG I+ + + YKVYTPF K ++ L Sbjct: 116 ALKEQGIKTQTYWDQLLHYPGEIVTKSGEPYKVYTPFWKNWELQSKDSITNNLENLEGLT 175 Query: 171 QADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYY 230 Q +L +++ T + +DYP + GE A L FC + Y Sbjct: 176 QTELEQ--AKTVKIIDLPTVKELGYRWDYPL-----ILSPGETAAAERLDYFCDAAINEY 228 Query: 231 VEQRDIPAIQGTSQLSPYLSIGVLSPRQCWN-RLKEEFVDLLIKPKSGAFSWLNELIWRE 289 EQR+ PAI+GTSQLSP L GV+ R W LK + + +W EL WRE Sbjct: 229 QEQRNFPAIEGTSQLSPALKFGVIGIRTVWQATLKAMENSRSDEVRESIVTWQKELAWRE 288 Query: 290 FYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWM 349 FY+H + F+P + G P+ + W+ + L QAW G TG+PI+DAAMRQLN GWM Sbjct: 289 FYQHCLYFFPELAEG-PYREDFQDFPWDNNEVLFQAWCDGKTGYPIVDAAMRQLNETGWM 347 Query: 350 HNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIF 409 HNR RMI ASFL KDL+++W+ GE+YFM L+DGDLA+NNGGWQW+AS+G D P RIF Sbjct: 348 HNRCRMIVASFLTKDLMINWQWGEKYFMQTLIDGDLAANNGGWQWSASSGMDPKP-LRIF 406 Query: 410 NPTIQGKRFDPQGTFIRHWLPELNNVPTQY-IHAPHSWLDKNDLSLNYPLPIVDHKKACH 468 NP Q ++FDP +IR WLPEL ++ T+ + S LD LS YP PIV+H + Sbjct: 407 NPASQAQKFDPDADYIRQWLPELRSLDTEVLVTGKISPLDC--LSCGYPQPIVNHNQQQR 464 Query: 469 HTLNQYYAAKK 479 +Y K+ Sbjct: 465 EFKRRYSQVKQ 475 >gi|71903837|ref|YP_280640.1| deoxyribodipyrimidine photolyase [Streptococcus pyogenes MGAS6180] gi|71802932|gb|AAX72285.1| deoxyribodipyrimidine photolyase [Streptococcus pyogenes MGAS6180] Length = 477 Score = 284 bits (727), Expect = 2e-74, Method: Compositional matrix adjust. Identities = 185/495 (37%), Positives = 266/495 (53%), Gaps = 46/495 (9%) Query: 6 AMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASL 65 ++ V ++W R DLRI D KAL A S + + VF EQ S QS FI S+ Sbjct: 7 SVMVSVMWFRRDLRIDDQKALAHAI-ASQSPTLCVFQFNKEQLNLLH-SRNQSSFI-TSV 63 Query: 66 LQVQKSLSQKGIVFQYHQCSNFDDSIEWLD-SYCLQQRVTKL-------FYNRQYEINEV 117 L +K L +C + D + + D C +Q +T+L F + + Sbjct: 64 LAFRKLL----------KCESIDLYLMYGDLMTCFEQLLTQLKDWTDVYFNYDESGYGRL 113 Query: 118 RRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSL 177 R K + ++ + ++ D L I+N + Q YKV+TP+ + + QN + + Sbjct: 114 RDQKAAQFFKKNGIAVHTYQDHYLHGSQEIINQSGQPYKVFTPYYR-IWQNYPKETPIKV 172 Query: 178 PVPAIRLTGPVTPSNIPR----FFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQ 233 + R TP ++ R F D +Q + +Q L +F ++++ Y Sbjct: 173 ELSQGRWLNLETPDDVLRTVESFKDEKYQDVATFDEASKQ-----LNRFIQDQLAAYHAN 227 Query: 234 RDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKS-GAFSWLNELIWREFYR 292 RD PA GTS+LSP+L IG + R ++ +++ P S G ++L EL WR+FY Sbjct: 228 RDFPAQLGTSRLSPFLRIGAIGIRTVYHAVRQ-------APNSLGQATFLKELAWRDFYN 280 Query: 293 HLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNR 352 + YP +P +IEW + Q WK+G TG+PI+DAAM QL GWMHNR Sbjct: 281 MVYVAYPDQ-KTQPIQKAFSQIEWVNNPDWFQLWKEGKTGYPIVDAAMLQLQKTGWMHNR 339 Query: 353 LRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPT 412 LRMI ASFL KDLL DWR+GE+YF QL+D D ASN GGWQWAASTG D+VPYFRIFNP Sbjct: 340 LRMIVASFLTKDLLCDWRLGEQYFQQQLIDYDAASNIGGWQWAASTGTDAVPYFRIFNPV 399 Query: 413 IQGKRFDPQGTFIRHWLPELNNVPTQYIHAP---HSWLDKND---LSLNYPLPIVDHKKA 466 QGKRFDP+G FI+ +LP+L +VP +Y+H P +L ++ + +YP PIVDH K Sbjct: 400 TQGKRFDPKGEFIKAYLPQLEHVPEKYLHEPWKMPKYLQESVSCIIGTDYPQPIVDHAKQ 459 Query: 467 CHHTLNQYYAAKKQS 481 + +Y AK+++ Sbjct: 460 REQAIAKYEWAKEKA 474 >gi|254445216|ref|ZP_05058692.1| deoxyribodipyrimidine photolyase family [Verrucomicrobiae bacterium DG1235] gi|198259524|gb|EDY83832.1| deoxyribodipyrimidine photolyase family [Verrucomicrobiae bacterium DG1235] Length = 472 Score = 284 bits (727), Expect = 2e-74, Method: Compositional matrix adjust. Identities = 175/481 (36%), Positives = 251/481 (52%), Gaps = 40/481 (8%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 +VW R DLR+ DN AL A + + V+ V++ E A +++ SL + + Sbjct: 8 IVWFRRDLRLADNPALSEALASGE-PVLPVYVFDEEGEGDSPDGAASKWWLHHSLASLDE 66 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL-QH 129 SL G + S+ +E C + +F+NR+YE V RD ++K L Sbjct: 67 SLKGLGSRLVLLRGSSKSALVE----LCREMGARAVFWNRRYEPAVVERDTEIKKSLVDC 122 Query: 130 RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189 V +SF+ S++ P S+ N + +KV+TPF K IQNL S P + T Sbjct: 123 GVQARSFNGSLMQSPLSVANKSGTPFKVFTPFWKH-IQNL------STRTPLAKPDALTT 175 Query: 190 PSNIPR------FFDYP----FQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAI 239 P ++P+ F P + + GE+ A L F K Y + RD P++ Sbjct: 176 PKSLPKGESLESFELLPRLSWADGFNEEWIPGEKGAEKALSLFAKGGAAKYAKDRDTPSV 235 Query: 240 QGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYP 299 +G S+LSP+L G +SP Q W+ L + + +L ++ WREF HL+ F+ Sbjct: 236 RGVSRLSPHLHFGEISPNQIWHALDRKKHE----------PYLRQIAWREFAHHLL-FHF 284 Query: 300 SVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITAS 359 +P P W ++ L+AW+ G TG+PI+DA MR+L GWMHNR+RMI +S Sbjct: 285 KDTPSEPLRPEFAAFPWTRNPGWLKAWQTGQTGYPIVDAGMRELWQTGWMHNRVRMIASS 344 Query: 360 FLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFD 419 FLVK LL W+ G +F L+D DLA+N GWQW A G D+ PYFRIFNP QG+RFD Sbjct: 345 FLVKHLLQPWQDGAAWFWDTLVDADLANNTMGWQWVAGCGADAAPYFRIFNPITQGERFD 404 Query: 420 PQGTFIRHWLPELNNVPTQYI----HAPHSWLDKN--DLSLNYPLPIVDHKKACHHTLNQ 473 GT+ R W+PEL +P +Y+ AP + L+K DL NYP+PIVDH KA L+ Sbjct: 405 GDGTYTRRWMPELARLPNKYLFKPWEAPAALLEKAGVDLGGNYPMPIVDHGKARKAALDA 464 Query: 474 Y 474 Y Sbjct: 465 Y 465 >gi|94990761|ref|YP_598861.1| deoxyribodipyrimidine photolyase [Streptococcus pyogenes MGAS10270] gi|94544269|gb|ABF34317.1| Deoxyribodipyrimidine photolyase [Streptococcus pyogenes MGAS10270] Length = 477 Score = 284 bits (726), Expect = 2e-74, Method: Compositional matrix adjust. Identities = 186/496 (37%), Positives = 264/496 (53%), Gaps = 48/496 (9%) Query: 6 AMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASL 65 ++ V ++W R DLRI D KAL A S + + VF EQ S QS FI S+ Sbjct: 7 SVMVSVMWFRRDLRIDDQKAL-AHVIASQSPTLCVFQFNKEQLNLLH-SRNQSSFI-TSV 63 Query: 66 LQVQKSLSQKGIVFQYHQCSNFDDSIEWLD-SYCLQQRVTKL-------FYNRQYEINEV 117 L +K L +C D + + D C +Q +T+L F + + Sbjct: 64 LAFRKLL----------KCEGIDLYLMYGDLMTCFEQLLTQLKDWTDVYFNYDESGYGRL 113 Query: 118 RRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSL 177 R K + ++ + ++ D L I+N + Q YKV+TP+ + + QN + + Sbjct: 114 RDQKAAQFFKKNGIAVHTYQDHYLHGSQEIINQSGQPYKVFTPYYR-IWQNYPKETPIKV 172 Query: 178 PVPAIRLTGPVTPSNIPR----FFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQ 233 + R TP ++ R F D +Q + +Q L +F ++++ Y Sbjct: 173 ELSQDRWLNLETPDDVLRTVESFKDEKYQDVATFDEASKQ-----LNRFIQDQLAAYHAN 227 Query: 234 RDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKS-GAFSWLNELIWREFYR 292 RD PA GTS+LSP+L IG + R ++ +++ P S G ++L EL WR+FY Sbjct: 228 RDFPAQLGTSRLSPFLRIGAIGIRTVYHAVRQ-------APNSLGQATFLKELAWRDFYN 280 Query: 293 HLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNR 352 + YP +P +IEW + Q WK+G TG+PI+DAAM QL GWMHNR Sbjct: 281 MVYVAYPDQ-KTQPIQKAFSQIEWVNNPDWFQLWKEGKTGYPIVDAAMLQLQKTGWMHNR 339 Query: 353 LRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPT 412 LRMI ASFL KDLL DWR+GE+YF QL+D D ASN GGWQWAASTG D+VPYFRIFNP Sbjct: 340 LRMIVASFLTKDLLCDWRLGEQYFQQQLIDYDAASNIGGWQWAASTGTDAVPYFRIFNPV 399 Query: 413 IQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKN-------DLSLNYPLPIVDHKK 465 QGKRFDP+G FI+ +LP+L +VP +Y+H P + KN + +YP PIVDH K Sbjct: 400 TQGKRFDPKGEFIKAYLPQLEHVPEKYLHEPWK-MPKNLQESVSCIIGTDYPQPIVDHAK 458 Query: 466 ACHHTLNQYYAAKKQS 481 + +Y AK+++ Sbjct: 459 QREQAIAKYEWAKEKA 474 >gi|94994739|ref|YP_602837.1| deoxyribodipyrimidine photolyase [Streptococcus pyogenes MGAS10750] gi|94548247|gb|ABF38293.1| Deoxyribodipyrimidine photolyase [Streptococcus pyogenes MGAS10750] Length = 477 Score = 284 bits (726), Expect = 2e-74, Method: Compositional matrix adjust. Identities = 186/496 (37%), Positives = 264/496 (53%), Gaps = 48/496 (9%) Query: 6 AMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASL 65 ++ V ++W R DLRI D KAL A S + + VF EQ S QS FI S+ Sbjct: 7 SVMVSVMWFRRDLRIDDQKAL-AHVIASQSPTLCVFQFNKEQLNLLH-SRNQSSFI-TSV 63 Query: 66 LQVQKSLSQKGIVFQYHQCSNFDDSIEWLD-SYCLQQRVTKL-------FYNRQYEINEV 117 L +K L +C D + + D C +Q +T+L F + + Sbjct: 64 LAFRKLL----------KCEGIDLYLMYGDLMTCFEQLLTQLKDWTDVYFNYDESGYGRL 113 Query: 118 RRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSL 177 R K + ++ + ++ D L I+N + Q YKV+TP+ + + QN + + Sbjct: 114 RDQKAAQFFKKNGIAVHTYQDHYLHGSQEIINQSGQPYKVFTPYYR-IWQNYPKETPIKV 172 Query: 178 PVPAIRLTGPVTPSNIPR----FFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQ 233 + R TP ++ R F D +Q + +Q L +F ++++ Y Sbjct: 173 ELSQGRWLNLETPDDVLRTVESFKDEKYQDVATFDEASKQ-----LNRFIQDQLAAYHAN 227 Query: 234 RDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKS-GAFSWLNELIWREFYR 292 RD PA GTS+LSP+L IG + R ++ +++ P S G ++L EL WR+FY Sbjct: 228 RDFPAQLGTSRLSPFLRIGAIGIRTVYHAVRQ-------APNSLGQATFLKELAWRDFYN 280 Query: 293 HLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNR 352 + YP +P +IEW + Q WK+G TG+PI+DAAM QL GWMHNR Sbjct: 281 MVYVAYPDQ-KTQPIQKAFSQIEWVNNPDWFQLWKEGKTGYPIVDAAMLQLQKTGWMHNR 339 Query: 353 LRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPT 412 LRMI ASFL KDLL DWR+GE+YF QL+D D ASN GGWQWAASTG D+VPYFRIFNP Sbjct: 340 LRMIVASFLTKDLLCDWRLGEQYFQQQLIDYDAASNIGGWQWAASTGTDAVPYFRIFNPV 399 Query: 413 IQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKN-------DLSLNYPLPIVDHKK 465 QGKRFDP+G FI+ +LP+L +VP +Y+H P + KN + +YP PIVDH K Sbjct: 400 TQGKRFDPKGEFIKAYLPQLEHVPEKYLHEPWK-MPKNLQESVSCIIGTDYPQPIVDHAK 458 Query: 466 ACHHTLNQYYAAKKQS 481 + +Y AK+++ Sbjct: 459 QREQAIAKYEWAKEKA 474 >gi|15675407|ref|NP_269581.1| putative deoxyribodipyrimidine photolyase [Streptococcus pyogenes M1 GAS] gi|71911049|ref|YP_282599.1| deoxyribodipyrimidine photolyase [Streptococcus pyogenes MGAS5005] gi|13622594|gb|AAK34302.1| putative deoxyribodipyrimidine photolyase [Streptococcus pyogenes M1 GAS] gi|71853831|gb|AAZ51854.1| deoxyribodipyrimidine photolyase [Streptococcus pyogenes MGAS5005] Length = 469 Score = 284 bits (726), Expect = 3e-74, Method: Compositional matrix adjust. Identities = 186/493 (37%), Positives = 262/493 (53%), Gaps = 48/493 (9%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 V ++W R DLRI D KAL A S + + VF EQ S QS FI S+L Sbjct: 2 VSVMWFRRDLRIDDQKALAHAI-ASQSPTLCVFQFNKEQLNLLH-SRNQSSFI-TSVLAF 58 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLD-SYCLQQRVTKL-------FYNRQYEINEVRRD 120 +K L +C D + + D C +Q +T+L F + +R Sbjct: 59 RKLL----------KCEGIDLYLMYGDLMTCFEQLLTQLKDWTDVYFNYDESGYGRLRDQ 108 Query: 121 KLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVP 180 K + ++ + ++ D L I+N + Q YKV+TP+ + + QN + + + Sbjct: 109 KAAQFFKKNGIAVHTYQDHYLHGSQEIINQSGQPYKVFTPYYR-IWQNYPKETPIKVELS 167 Query: 181 AIRLTGPVTPSNIPR----FFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDI 236 R TP ++ R F D +Q + +Q L +F ++++ Y RD Sbjct: 168 QGRWLNLETPDDVLRTVESFKDEKYQDVATFDEASKQ-----LNRFIQDQLAAYHANRDF 222 Query: 237 PAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKS-GAFSWLNELIWREFYRHLM 295 PA GTS+LSP+L IG + R ++ +++ P S G ++L EL WR+FY + Sbjct: 223 PAQLGTSRLSPFLRIGAIGIRTVYHAVRQ-------APNSLGQATFLKELAWRDFYNMVY 275 Query: 296 AFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRM 355 YP +P +IEW + Q WK+G TG+PI+DAAM QL GWMHNRLRM Sbjct: 276 VAYPDQ-KTQPIQKAFSQIEWVNNPDWFQLWKEGKTGYPIVDAAMLQLQKTGWMHNRLRM 334 Query: 356 ITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQG 415 I ASFL KDLL DWR+GE+YF QL+D D ASN GGWQWAASTG D+VPYFRIFNP QG Sbjct: 335 IVASFLTKDLLCDWRLGEQYFQQQLIDYDAASNIGGWQWAASTGTDAVPYFRIFNPVTQG 394 Query: 416 KRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKN-------DLSLNYPLPIVDHKKACH 468 KRFDP+G FI+ +LP+L +VP +Y+H P + KN + +YP PIVDH K Sbjct: 395 KRFDPKGEFIKAYLPQLEHVPEKYLHEPWK-MPKNLQESVSCIIGTDYPQPIVDHAKQRE 453 Query: 469 HTLNQYYAAKKQS 481 + +Y AK+++ Sbjct: 454 QAIAKYEWAKEKA 466 >gi|209364020|ref|YP_002268317.1| deoxyribodipyrimidine photolyase [Coxiella burnetii Dugway 5J108-111] gi|207081953|gb|ACI23155.1| deoxyribodipyrimidine photolyase [Coxiella burnetii Dugway 5J108-111] Length = 452 Score = 283 bits (725), Expect = 3e-74, Method: Compositional matrix adjust. Identities = 174/440 (39%), Positives = 254/440 (57%), Gaps = 22/440 (5%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 + W R DLR++DN AL A ++D +I ++I +Q + G + R +++ SL +Q Sbjct: 4 IFWFRQDLRLSDNPALVEAAKSAD-HLIPLYILD-DQLKMLGDAQRW--WLHHSLSSLQT 59 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130 +LS+KG + +E + Y +V K+++NR YE D LE RL Sbjct: 60 ALSKKGTSLILKKGDTKRVLLELIKKY----KVEKIYWNRSYEPPYREIDTYLENRLPP- 114 Query: 131 VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVP-----AIRLT 185 + + + ++L P I N + YK++TPF K + +L + P AI+ Sbjct: 115 LSVEIYHSTLLTEPQKIKNKSGGYYKIFTPFWKHINASLQPRKTLAAPKKFSQHRAIKSD 174 Query: 186 GPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245 T + +P+ D+ Q D P GE+NA +L+KF KE + Y RD P I TS L Sbjct: 175 NLETWNLLPKHPDWS-QGFDQWKP-GEKNAQIVLKKFIKENLKNYPAHRDRPDISSTSHL 232 Query: 246 SPYLSIGVLSPRQCWNRLKEEFV-DLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304 SPYL G +S RQ W + + + D ++ + F L +LIWREF +L+ +P MG Sbjct: 233 SPYLHFGEISIRQVWTAITQATIQDKNLQKAADVF--LRQLIWREFAYYLLWHFPQ--MG 288 Query: 305 KP-FIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363 K F + +W K+ + L+AW++G TG+PI+DA MR+L G+MHNR RMI ASFLVK Sbjct: 289 KSNFRNQFDNFKWKKNKNWLRAWQKGLTGYPIVDAGMRELWCTGYMHNRARMIVASFLVK 348 Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423 DL++DWR GE++F + LLD DLA+N GWQW A G D+ PYFRIFNP +Q K+FDP GT Sbjct: 349 DLMIDWREGEKWFWNTLLDADLANNALGWQWIAGCGLDAAPYFRIFNPILQSKKFDPDGT 408 Query: 424 FIRHWLPELNNVPTQYIHAP 443 +I+ W+PEL VP++YIH P Sbjct: 409 YIKRWIPELAKVPSKYIHYP 428 >gi|332524149|ref|ZP_08400379.1| deoxyribodipyrimidine photo-lyase [Rubrivivax benzoatilyticus JA2] gi|332107488|gb|EGJ08712.1| deoxyribodipyrimidine photo-lyase [Rubrivivax benzoatilyticus JA2] Length = 505 Score = 283 bits (725), Expect = 3e-74, Method: Compositional matrix adjust. Identities = 180/492 (36%), Positives = 250/492 (50%), Gaps = 45/492 (9%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 LVWLR DLR DN ALY A + +V VF+ PE + R+ FI S++ V Sbjct: 9 LVWLRRDLRTEDNAALYHALRAA-RRVWCVFVFDPEILEPLPRADRRVEFIRDSVVGVDA 67 Query: 71 SL---------SQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDK 121 L G++ ++ + ++ + ++ + E + RD Sbjct: 68 ELRALAASHGIDGAGLIVRHGR------PLQEIPRLAAALGAQAVYASHDDEPEALARDA 121 Query: 122 LLEKRLQHRVIC-KSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVP 180 + L I D V+ +L + V+TP+R A ++ L L S PV Sbjct: 122 RVRGALADAGIAFHGSKDHVIFERDEVLTQGGGPFSVFTPYRNAWLKKLDDFYLSSYPVE 181 Query: 181 AIRLTGPVTP----SNIPRFFDYPFQAIDP---MFPIGEQNALHILRKFCKEKVYYYVEQ 233 R G + P +P D F++ + P G +L F E+V +Y + Sbjct: 182 --RHAGALAPKPAGETLPTLADIGFESTNLHALKLPSGPAGGRELLADFL-ERVDHYADW 238 Query: 234 RDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRH 293 RD PA++G S L P+L G +S R RL E L GA WL+EL+WR+FY Sbjct: 239 RDFPAVKGPSYLGPHLRFGTVSIR----RLAREAHQRLTAGSRGAEVWLSELVWRDFYHQ 294 Query: 294 LMAFYPSVCMGKPFIPWTEKIEWNKDSH---LLQAWKQGYTGFPIIDAAMRQLNTIGWMH 350 L+ +P V +G F P +++ W H L AW +G TG+PI+DAAM QL G+MH Sbjct: 295 LLHHHPRV-VGGCFKPEYDRLHWEHGKHADELFAAWCEGRTGYPIVDAAMHQLTRTGYMH 353 Query: 351 NRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFN 410 NRLRMI+ASFL KDL +DWR GE +F L D DLASNNGGWQWAASTG D+ PYFRIFN Sbjct: 354 NRLRMISASFLTKDLGIDWRRGEAWFARHLNDFDLASNNGGWQWAASTGCDAQPYFRIFN 413 Query: 411 PTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND--------LSLNYPLPIVD 462 P Q +RFDP+G FIR +LP+L +P +HAP W + L +YP P+V Sbjct: 414 PVSQSERFDPEGRFIRRYLPQLAKLPDTLLHAP--WRARPADLAAAGVVLGRDYPAPVVA 471 Query: 463 HKKACHHTLNQY 474 H++A TL ++ Sbjct: 472 HEEARERTLARF 483 >gi|295689308|ref|YP_003593001.1| deoxyribodipyrimidine photo-lyase [Caulobacter segnis ATCC 21756] gi|295431211|gb|ADG10383.1| Deoxyribodipyrimidine photo-lyase [Caulobacter segnis ATCC 21756] Length = 481 Score = 283 bits (725), Expect = 3e-74, Method: Compositional matrix adjust. Identities = 181/489 (37%), Positives = 260/489 (53%), Gaps = 47/489 (9%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 +VW R DLRI DN AL A +S V+ ++I E + A ++ SL + + Sbjct: 16 IVWFRKDLRIADNPALRHAA-DSGRPVVCLYILD-ETPGVRPMGAASLWWLDKSLKSLAQ 73 Query: 71 SLSQKG--IVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128 L + G +V + ++ LD+ + T + +NR Y+ V RD ++ RL+ Sbjct: 74 ELEKLGNRLVLRKGVAADV------LDALIAETGATGVVWNRLYDKASVDRDATIKARLK 127 Query: 129 HR-VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNL--------------VQAD 173 V C+SF+ +L P ++ N + Q YKV+TP+ +A Q+L + Sbjct: 128 EAGVDCQSFNAGLLNEPWTVQNGSGQPYKVFTPYWRAARQHLDDVTVEPAPKVLRCLDKA 187 Query: 174 LRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQ 233 +RS P+ A L P P + + FD ++ GE A L F + Y E+ Sbjct: 188 VRSEPLAAWDLH-PTRP-DWSKGFD--------LWTPGEAGARARLDAFLSGPITGYGEK 237 Query: 234 RDIPAIQGTSQLSPYLSIGVLSPRQCW--NRLKEEFVDLLIKPKSGAFSWLNELIWREFY 291 RDIP+ TS+LSP+L G + PRQ W R E D+ P + A +L+EL WREF Sbjct: 238 RDIPSAPATSRLSPHLHFGEIGPRQVWLAARNAAEAGDI---PTAEADKFLSELGWREFN 294 Query: 292 RHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHN 351 ++ +P + + F P + W KD +AW +G TG+PI+DA MR+L T G+MHN Sbjct: 295 HSILFHWPQLP-ARNFKPEFDGFPWAKDHAAFEAWTRGETGYPIVDAGMRELWTTGFMHN 353 Query: 352 RLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNP 411 R+RMI ASFL+K L++DWR GE +F L+D DLA+N G WQW A +G D+ PYFRIFNP Sbjct: 354 RVRMIVASFLIKHLMIDWREGEAWFWDTLVDADLANNVGNWQWTAGSGADAAPYFRIFNP 413 Query: 412 TIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLN----YPLPIVDHKKAC 467 QG++FDP+G ++R W+PEL VP IH P W LS Y PIVDH KA Sbjct: 414 ISQGEKFDPRGDYVRRWVPELKTVPDDVIHKP--WERPLHLSPAARRIYAKPIVDHAKAR 471 Query: 468 HHTLNQYYA 476 L Y++ Sbjct: 472 ERALEAYHS 480 >gi|94311677|ref|YP_584887.1| deoxyribodipyrimidine photo-lyase type I [Cupriavidus metallidurans CH34] gi|93355529|gb|ABF09618.1| deoxyribodipyrimidine photolyase, FAD-binding protein [Cupriavidus metallidurans CH34] Length = 513 Score = 283 bits (725), Expect = 3e-74, Method: Compositional matrix adjust. Identities = 191/499 (38%), Positives = 257/499 (51%), Gaps = 48/499 (9%) Query: 11 LVWLRNDLRITDNKAL-YAACHNSDAKVIAVF---IATPEQWRQHGISA-RQSHFIYASL 65 LVWLR DLR DN AL YA H + VF I P R G+ A R+ FI SL Sbjct: 28 LVWLRRDLRTDDNAALHYALKHCRQVWCVFVFDREILAPLLAR--GLHADRRVEFILRSL 85 Query: 66 LQVQKSLSQKG---IVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKL 122 ++++L G IV + + + + V +F N YE RD+ Sbjct: 86 EPLRRALEDSGGGLIVLD-------GTARQAIPRLAAELEVEAVFANHDYEPAANDRDEA 138 Query: 123 LEKRL--QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVP 180 + + L RV+ +F D V+ IL + + V+TP++ A ++ + DLR P+ Sbjct: 139 VRRTLAADSRVLL-TFKDQVIFERDEILTGQGRPFSVFTPYKNAWLRTVRPFDLRPYPIE 197 Query: 181 AIRLTGPVTP----SNIPRFFDYPFQAID---PMFPIGEQNALHILRKFCKEKVYYYVEQ 233 + T P +P D F A + P G A + +F ++ Y + Sbjct: 198 KHQETLAPVPQRYRGQLPTLADLGFTATNLAGIAMPTGSDGAHALFDEFLS-RIGDYGRR 256 Query: 234 RDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKS---GAFSWLNELIWREF 290 RD PA++G S LS +L G +S R L D +++ + GA WL+ELIWR+F Sbjct: 257 RDFPAVRGPSYLSVHLRFGTISIRT----LARAAHDTMLRGGAASEGATVWLSELIWRDF 312 Query: 291 YRHLMAFYPSVCMGKPFIPWTEKIEW---NKDSHLLQAWKQGYTGFPIIDAAMRQLNTIG 347 Y ++ +P V GK F + + W AW TG+P+IDAAM Q+ G Sbjct: 313 YFMILHHHPRVAEGKSFHAEYDGLRWIAPATGDRYFAAWCDARTGYPLIDAAMLQIRQSG 372 Query: 348 WMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFR 407 +MHNRLRM+TASFLVKDL VDWR GE+YF QL D DLA+NNGGWQWAASTG D+ PYFR Sbjct: 373 YMHNRLRMVTASFLVKDLGVDWRRGEQYFADQLNDFDLAANNGGWQWAASTGCDAQPYFR 432 Query: 408 IFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND--------LSLNYPLP 459 IFNP Q ++FDPQG FIR +LP L +P +YIHAP W N+ L +YP P Sbjct: 433 IFNPVTQSEKFDPQGQFIRRYLPMLAALPDRYIHAP--WTAPNEVLRAAGVTLGKDYPRP 490 Query: 460 IVDHKKACHHTLNQYYAAK 478 IV H A TL +Y K Sbjct: 491 IVQHDVARKETLERYGVVK 509 >gi|19746457|ref|NP_607593.1| deoxyribodipyrimidine photolyase [Streptococcus pyogenes MGAS8232] gi|306827047|ref|ZP_07460345.1| deoxyribodipyrimidine photolyase [Streptococcus pyogenes ATCC 10782] gi|19748660|gb|AAL98092.1| putative deoxyribodipyrimidine photolyase [Streptococcus pyogenes MGAS8232] gi|304430793|gb|EFM33804.1| deoxyribodipyrimidine photolyase [Streptococcus pyogenes ATCC 10782] Length = 469 Score = 283 bits (725), Expect = 3e-74, Method: Compositional matrix adjust. Identities = 186/493 (37%), Positives = 262/493 (53%), Gaps = 48/493 (9%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 V ++W R DLRI D KAL A S + + VF EQ S QS FI S+L Sbjct: 2 VSVMWFRRDLRIDDQKAL-AHVIASQSPTLCVFQFNKEQLNLLH-SRNQSSFI-TSVLAF 58 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLD-SYCLQQRVTKL-------FYNRQYEINEVRRD 120 +K L +C D + + D C +Q +T+L F + +R Sbjct: 59 RKLL----------KCEGIDLYLMYGDLMTCFEQLLTQLKDWTDVYFNYDESGYGRLRDQ 108 Query: 121 KLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVP 180 K + ++ + ++ D L I+N + Q YKV+TP+ + + QN + + + Sbjct: 109 KAAQFFKKNGIAVHTYQDHYLHGSQEIINQSGQPYKVFTPYYR-IWQNYPKETPIKVELS 167 Query: 181 AIRLTGPVTPSNIPR----FFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDI 236 R TP ++ R F D +Q + +Q L +F ++++ Y RD Sbjct: 168 QGRWLNLETPDDVLRTVESFKDEKYQDVATFDEASKQ-----LNRFIQDQLAAYHANRDF 222 Query: 237 PAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKS-GAFSWLNELIWREFYRHLM 295 PA GTS+LSP+L IG + R ++ +++ P S G ++L EL WR+FY + Sbjct: 223 PAQLGTSRLSPFLRIGAIGIRTVYHAVRQ-------APNSLGQATFLKELAWRDFYNMVY 275 Query: 296 AFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRM 355 YP +P +IEW + Q WK+G TG+PI+DAAM QL GWMHNRLRM Sbjct: 276 VAYPDQ-KTQPIQKAFSQIEWVNNPDWFQLWKEGKTGYPIVDAAMLQLQKTGWMHNRLRM 334 Query: 356 ITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQG 415 I ASFL KDLL DWR+GE+YF QL+D D ASN GGWQWAASTG D+VPYFRIFNP QG Sbjct: 335 IVASFLTKDLLCDWRLGEQYFQQQLIDYDAASNIGGWQWAASTGTDAVPYFRIFNPVTQG 394 Query: 416 KRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKN-------DLSLNYPLPIVDHKKACH 468 KRFDP+G FI+ +LP+L +VP +Y+H P + KN + +YP PIVDH K Sbjct: 395 KRFDPKGEFIKAYLPQLEHVPEKYLHEPWK-MPKNLQESVSCIIGTDYPQPIVDHAKQRE 453 Query: 469 HTLNQYYAAKKQS 481 + +Y AK+++ Sbjct: 454 QAIAKYEWAKEKA 466 >gi|313634631|gb|EFS01103.1| deoxyribodipyrimidine photo-lyase [Listeria seeligeri FSL N1-067] Length = 471 Score = 283 bits (725), Expect = 4e-74, Method: Compositional matrix adjust. Identities = 175/486 (36%), Positives = 261/486 (53%), Gaps = 43/486 (8%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSH-FIYASLLQVQ 69 ++W R DLR+ DNKALY AC + D +I +F PEQ+ I+ SH ++S+ + Sbjct: 4 VMWFRRDLRLNDNKALYQACRDKD-DLILLFQVNPEQF----INGSPSHQAFFSSVAYFK 58 Query: 70 KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRV---TKLFYNRQYEINEVRRDKL-LEK 125 + L + H F + + L+ L++++ K+++NR +RD+ L+ Sbjct: 59 QKLDKTA-----HLQIMFGEPMGLLEK--LKEKIPAWDKVYFNRDETGYGAKRDEAALQF 111 Query: 126 RLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185 + + ++ D+ L + A YKV+TP+ K + +++ P+P + Sbjct: 112 FAKEEIEVFAYHDAYLHHANDVKKSATDFYKVFTPYYKKW-----REEIKERPLPISLNS 166 Query: 186 GPVT-----PSNIPRFFDYPFQAIDPM--FPIGEQNALHILRKFCKEKVYYYVEQRDIPA 238 V P + +F + + + P+ +GEQ A + L F KE + Y E RD P Sbjct: 167 EKVNKTILFPEDEKQFVEMT-RELPPLDATKLGEQAAQNHLNYFVKENMADYNEARDFPD 225 Query: 239 IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFY 298 + TS LS +L G +S R W ++E + +G ++ EL WR+FY + + Sbjct: 226 LDKTSHLSRFLRTGEVSIRTVWQAVQE------AEHTNGRATFEKELCWRDFYNMIYVSF 279 Query: 299 PSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITA 358 P+ + IEW + Q W+QG TGFP++DAAMRQL GWMHNRLRMITA Sbjct: 280 PN-QKNEAIQANYRFIEWENNRTNFQKWQQGVTGFPLVDAAMRQLKETGWMHNRLRMITA 338 Query: 359 SFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRF 418 SFL KDLL+DWR GE+YF L+D D ASN GGWQWAASTG D+VPYFRIFNPT Q ++F Sbjct: 339 SFLTKDLLIDWRWGEKYFQQMLIDYDPASNIGGWQWAASTGTDAVPYFRIFNPTTQSEKF 398 Query: 419 DPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND------LSLNYPLPIVDHKKACHHTLN 472 DP G FIR ++ EL +P ++IH P + + +YP PIVDHK+ + Sbjct: 399 DPSGNFIRKYVQELAGLPDKFIHQPEKMTKQEQEKFHLIIGEDYPFPIVDHKERRKLAIA 458 Query: 473 QYYAAK 478 +Y +K Sbjct: 459 RYEFSK 464 >gi|296110301|ref|YP_003620682.1| hypothetical protein LKI_00850 [Leuconostoc kimchii IMSNU 11154] gi|295831832|gb|ADG39713.1| hypothetical protein LKI_00850 [Leuconostoc kimchii IMSNU 11154] Length = 478 Score = 283 bits (725), Expect = 4e-74, Method: Compositional matrix adjust. Identities = 185/491 (37%), Positives = 268/491 (54%), Gaps = 48/491 (9%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 ++W R DLR++DN AL A NSD K++ VF +Q + + QS F +AS+ Q++K Sbjct: 6 VMWFRRDLRVSDNIALAHAVENSD-KILFVFHIDTQQLEKQP-TVNQSSF-FASVQQLKK 62 Query: 71 SLSQKGI---VFQYHQCSNFDDSIE-----WLDSYCLQQRVTKLFYNRQYEINEVRRDKL 122 SL ++ I VF Y + + + I+ W D L++NR RD++ Sbjct: 63 SLKKQNINLYVF-YGELKDMFNHIKKQLPHWRD----------LYFNRDEHGYGGERDQV 111 Query: 123 LEKRLQHR--VICKSFDDSVLLPPGSILNHALQMYKVYTPFRK---ALIQ-NLVQADLRS 176 + K Q + + + D L I Y+V+TP+ K L++ N + DL + Sbjct: 112 ITKYCQEKLNISVHATMDYNLHAAHDIKKADGHYYQVFTPYFKRWMTLVKSNPITIDLTN 171 Query: 177 LPVPAIRLTGPVTPSNIPRFFD--YPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQR 234 + + ++ S + D + + +D IGE A IL F + K+ Y + R Sbjct: 172 ISQEHLTVSTLEQDSMLDALIDEKHSYAYVDQ---IGEDKARKILSDFIENKLTQYDQNR 228 Query: 235 DIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKS-GAFSWLNELIWREFYRH 293 D+P++ TS LS YL G +S R + +K+ P S G +++ EL WR++Y Sbjct: 229 DVPSLDATSHLSRYLRTGEISIRVVYEGIKQA-------PDSDGRSTFIKELCWRDYYNM 281 Query: 294 LMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRL 353 + A +P P +I W D W+ G+TGFPI+DAAMRQLN GWMHNRL Sbjct: 282 IYATHPQQNES-AIRPEFRQIRWRDDKIGFDDWQTGHTGFPIVDAAMRQLNETGWMHNRL 340 Query: 354 RMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTI 413 RMI ASFL KDLL++W+ GE YF +L+D D ASN GGWQWAASTG DSVPYFRIFNPT+ Sbjct: 341 RMIVASFLTKDLLINWQWGENYFKQKLVDYDPASNIGGWQWAASTGTDSVPYFRIFNPTL 400 Query: 414 QGKRFDPQGTFIRHWLPELNNVPTQYIHAPH--SWLDKN----DLSLNYPLPIVDHKKAC 467 Q K+FDPQG FI+ ++PEL +P IH P+ S +D+ + +YP PIV+HK A Sbjct: 401 QSKKFDPQGLFIKKYIPELKRIPGAKIHEPNKLSSIDQKRYHISIGHDYPKPIVNHKTAR 460 Query: 468 HHTLNQYYAAK 478 + + Y +K Sbjct: 461 INAIAAYEKSK 471 >gi|16125677|ref|NP_420241.1| deoxyribodipyrimidine photolyase [Caulobacter crescentus CB15] gi|221234432|ref|YP_002516868.1| deoxyribodipyrimidine photolyase [Caulobacter crescentus NA1000] gi|13422791|gb|AAK23409.1| deoxyribodipyrimidine photolyase - classI [Caulobacter crescentus CB15] gi|220963604|gb|ACL94960.1| deoxyribodipyrimidine photolyase [Caulobacter crescentus NA1000] Length = 483 Score = 283 bits (724), Expect = 4e-74, Method: Compositional matrix adjust. Identities = 179/483 (37%), Positives = 246/483 (50%), Gaps = 35/483 (7%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFI--ATPEQWRQHGISARQSHFIYASLLQV 68 +VW R DLRI DN AL A S VI ++I TP G S ++ SL + Sbjct: 18 IVWFRKDLRIADNPALRHAAQ-SGRPVIPLYILDETPGIRPMGGASL---WWLDKSLKSL 73 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128 SL G + + E LD Q + +NR Y+ RD ++ L+ Sbjct: 74 AASLETLGTKLVLRKGV----AAEVLDQLIAQSGARSVVWNRLYDKPSTDRDAAIKAALR 129 Query: 129 HR-VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187 R V C+SF+ +L P ++ N + Q YKV+TP+ +A ++L + + P Sbjct: 130 DRGVDCQSFNAGLLNEPWTVKNGSDQPYKVFTPYWRAAREHLTDVAVTAAPGHL------ 183 Query: 188 VTPSNIPRFFDYPFQAIDPMFPI----------GEQNALHILRKFCKEKVYYYVEQRDIP 237 V P+ P + P P GE A L F K + Y +QRDIP Sbjct: 184 VAPARFPASESLASWNLHPTKPDWSKGFDLWTPGEAGAHARLDAFLKGPIKGYGDQRDIP 243 Query: 238 AIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAF 297 ++ TS+LSP+L G + PRQ W + D P + A +L+E+ WREF ++ Sbjct: 244 GVEATSKLSPHLHFGEIGPRQVWLATRSA-ADQGDIPLAEADKFLSEIGWREFNHSILYN 302 Query: 298 YPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMIT 357 +P + F P + W KD L+AWK+G TG+PI+DA MR+L T G+MHNR+RMI Sbjct: 303 WPHMPSAN-FKPEFDGFPWVKDEGALEAWKRGQTGYPIVDAGMRELWTTGFMHNRVRMIV 361 Query: 358 ASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKR 417 ASFL+K L++DWR GE +F LLD DLA+N G WQW A +G D+ PYFRIFNP QG++ Sbjct: 362 ASFLIKHLMIDWREGEAWFWDTLLDADLANNVGNWQWTAGSGADAAPYFRIFNPIAQGEK 421 Query: 418 FDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLN----YPLPIVDHKKACHHTLNQ 473 FDP+G ++R W+PEL NV IH P W L Y PIVDH A L Sbjct: 422 FDPKGDYVRRWVPELRNVSDDVIHKP--WTKPLHLPAGAKRLYSRPIVDHAMARARALEA 479 Query: 474 YYA 476 Y+ Sbjct: 480 YHG 482 >gi|67921140|ref|ZP_00514659.1| Deoxyribodipyrimidine photolyase [Crocosphaera watsonii WH 8501] gi|67857257|gb|EAM52497.1| Deoxyribodipyrimidine photolyase [Crocosphaera watsonii WH 8501] Length = 518 Score = 283 bits (724), Expect = 4e-74, Method: Compositional matrix adjust. Identities = 170/469 (36%), Positives = 256/469 (54%), Gaps = 26/469 (5%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 + W R DLR++DN L A +S +K++ +F + Q ++ + ++ L +++ Sbjct: 48 IFWHRRDLRVSDNIGLSKAYQHS-SKLVGLFCLDTDILNQDNVAPARITYMLGCLQDLRE 106 Query: 71 SLSQKG---IVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127 S Q G ++FQ + + L C+ F+N E +RD + + L Sbjct: 107 SYQQLGGQLLIFQGNPTQIIPQVADALKVDCV-------FWNNDVEPYSKKRDNQVIEAL 159 Query: 128 QHRVI-CKSFDDSVLLPPGSILNHALQM-YKVYTPFRKALIQ----NLVQA--DLRSLPV 179 Q R I +++ D +L PG IL + YKVYTPF ++ ++ N+ QA L SL Sbjct: 160 QERGIHSQTYWDQLLHAPGDILTKSNNAPYKVYTPFWRSWLKEEKANIAQALGKLESLSE 219 Query: 180 PAIRLTGPVTPSNIPRFFDYPFQAIDPM-FPIGEQNALHILRKFCKEKVYYYVEQRDIPA 238 I + ++P D + P+ GE A L FC +Y Y EQR+ P Sbjct: 220 EEINTVKNLGIIDLPTAKDLGYSWDAPLILEPGETAAKEQLNYFCDSLIYNYQEQRNYPG 279 Query: 239 IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLI-KPKSGAFSWLNELIWREFYRHLMAF 297 I GTS LSP GV+ R+ W + + + + +W E+ WREFY+H M F Sbjct: 280 INGTSTLSPAFKFGVIGIREVWQATLSAYENTYSDEARENIQTWQQEIAWREFYQHCMYF 339 Query: 298 YPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMIT 357 +P + G P+ + W+ + QAW +G TG+PI+DAAMRQLN GWMHNR RMI Sbjct: 340 FPELATG-PYRQEFKDFSWDNNEQHFQAWCEGKTGYPIVDAAMRQLNETGWMHNRCRMIV 398 Query: 358 ASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKR 417 ASFL KDL+++W+ GE+YFM +L+DGDL++NNGGWQW+AS+G D P RIFNP Q ++ Sbjct: 399 ASFLTKDLIINWQWGEKYFMQKLIDGDLSANNGGWQWSASSGMDPKP-LRIFNPASQAQK 457 Query: 418 FDPQGTFIRHWLPELNNVPTQY-IHAPHSWLDKNDLSLNYPLPIVDHKK 465 +DP G +IR W+PE++++ T+Y + L+ + S Y PIVDHK+ Sbjct: 458 YDPDGEYIRLWVPEISSLDTEYLVTGKIPPLEAH--SCGYLQPIVDHKQ 504 >gi|224823842|ref|ZP_03696951.1| Deoxyribodipyrimidine photo-lyase [Lutiella nitroferrum 2002] gi|224604297|gb|EEG10471.1| Deoxyribodipyrimidine photo-lyase [Lutiella nitroferrum 2002] Length = 469 Score = 283 bits (724), Expect = 4e-74, Method: Compositional matrix adjust. Identities = 174/475 (36%), Positives = 258/475 (54%), Gaps = 40/475 (8%) Query: 8 SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67 + L W R DLR+ D+ ALYAA +S+ +V+ VF+ + + R+ FI+ SL++ Sbjct: 3 TTALCWFRRDLRLDDHAALYAALRHSE-RVVCVFVFDRDILKHLPAQDRRVDFIWHSLVE 61 Query: 68 VQKSLSQKG---IVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLE 124 +++ L G +V ++ + + + + ++ +R YE RD + Sbjct: 62 LKEQLCALGSDLVVVS-------GRPVDCIPALAQEHGASTVWASRDYEPAACLRDAAVA 114 Query: 125 KRL-QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPA-I 182 +RL +H ++ D V+ +L + Y V+TP+R A ++ L L++ P + Sbjct: 115 ERLSRHGTRLETVKDQVIFEQDEVLTVNSKPYTVFTPYRNAWLKKLTPFFLQAYPSTRYL 174 Query: 183 RLTGPVTPSNIPRFFDYPFQAIDPM---FPIGEQNALHILRKFCKEKVYYYVEQRDIPAI 239 + + +P D F G A + F +++ +Y + RD PA Sbjct: 175 NRLARLAETPLPSLADLGFTDTGLGRLGIRAGMAGAAAVFTDF-GQRIEHYQQWRDFPAA 233 Query: 240 QGTSQLSPYLSIGVLSPRQ----CWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLM 295 +G S LS +L G +S RQ W + +GA +WL+ELIWREFY+ L+ Sbjct: 234 KGVSYLSVHLRFGTISIRQLAQFAWQ-----------QGSAGATTWLSELIWREFYQQLL 282 Query: 296 AFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRM 355 YP V + + F P ++ + D L AW G TG+P++DAAMRQL G+MHNRLRM Sbjct: 283 WHYPHV-VEESFKPEYRQLGFPNDETLFAAWCAGRTGYPLVDAAMRQLAYSGYMHNRLRM 341 Query: 356 ITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQG 415 +TASFLVKDLLVDWR GE YF +L+D DLA+NNGGWQWAASTG D+ P+FRIFNP Q Sbjct: 342 VTASFLVKDLLVDWRWGERYFAEKLIDYDLAANNGGWQWAASTGCDAQPWFRIFNPVTQS 401 Query: 416 KRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKN-----DLSLNYPLPIVDHKK 465 ++FDP+G FIR ++PEL + + IHAP W K L +YP PIVDH + Sbjct: 402 QKFDPEGKFIRRYVPELAALDNKAIHAP--WQAKVLPGGFLLGRDYPRPIVDHAE 454 >gi|222111113|ref|YP_002553377.1| deoxyribodipyrimidine photo-lyase [Acidovorax ebreus TPSY] gi|221730557|gb|ACM33377.1| Deoxyribodipyrimidine photo-lyase [Acidovorax ebreus TPSY] Length = 488 Score = 283 bits (724), Expect = 4e-74, Method: Compositional matrix adjust. Identities = 176/481 (36%), Positives = 253/481 (52%), Gaps = 23/481 (4%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISA-RQSHFIYASLLQVQ 69 LVWLR DLR D+ ALY A + +V VF+ + R+ FI+AS+ + Sbjct: 6 LVWLRRDLRCHDHAALYHALRRFE-RVYCVFVFDTDILDALLTRCDRRVEFIHASVCALD 64 Query: 70 ---KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 ++L+ + +++ + V ++ NR YE + RD+ + Sbjct: 65 EDLRALAARSGAPGGGLIVRHGTAVQCIVQLARSLGVREVLANRDYEPAALARDRRVADG 124 Query: 127 LQHRVICKS-FDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVP--AIR 183 L I S + D VLL G +LN Q Y V+TP+++ +Q L + PV A Sbjct: 125 LAACGIAFSDYKDQVLLEQGEVLNQLGQPYSVFTPYKRTWLQKLDAFQTKPYPVERHAHH 184 Query: 184 LTGPVTPSNIPRFFDYPFQAI---DPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ 240 L P +P D F A D P+G + A +L+ F Y + RD P + Sbjct: 185 LAVPPAGERLPTLADLGFVATNLADLQLPVGSRGAQQLLQDFLPHMAAYKLA-RDFPGRK 243 Query: 241 GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPS 300 G S LS +L G +S RQ + + + GA +WL+EL WR+FY ++ +P Sbjct: 244 GVSYLSVHLRFGTVSIRQLASLAARQAA----QGCEGAQTWLSELAWRDFYFMILWHHPH 299 Query: 301 VCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASF 360 V + + F P ++++W+ QAW TG+P++DAAMRQL G+MHNRLRM+ ASF Sbjct: 300 V-VTQAFRPEYDRVQWDDAPEYWQAWCAARTGYPLVDAAMRQLLQTGYMHNRLRMVVASF 358 Query: 361 LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDP 420 L KDL +DWR GE +F L D DLA+NNGGWQWAASTG D+ P+FRIFNP Q ++FDP Sbjct: 359 LTKDLGIDWRRGERFFAQHLNDYDLAANNGGWQWAASTGCDAQPWFRIFNPVAQSQKFDP 418 Query: 421 QGTFIRHWLPELNNVPTQYIHAPHSWLDKN------DLSLNYPLPIVDHKKACHHTLNQY 474 G FIR +LPEL VP +++H P S L ++YPLP+VDH A TL ++ Sbjct: 419 DGRFIRRYLPELACVPDKHLHFPASMKPLELQACGLRLGIDYPLPVVDHASARERTLMRF 478 Query: 475 Y 475 + Sbjct: 479 H 479 >gi|299534052|ref|ZP_07047404.1| deoxyribodipyrimidine photo-lyase [Comamonas testosteroni S44] gi|298717961|gb|EFI58966.1| deoxyribodipyrimidine photo-lyase [Comamonas testosteroni S44] Length = 490 Score = 283 bits (724), Expect = 5e-74, Method: Compositional matrix adjust. Identities = 184/497 (37%), Positives = 264/497 (53%), Gaps = 31/497 (6%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 + L+WLR DLR+ DN ALY A + K+ VF+ + R+ FI SL ++ Sbjct: 1 MGLIWLRRDLRLADNAALYHALQQCE-KLYCVFVFDDSILATLPHADRRVEFICQSLAEL 59 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128 +L + Q + + + + Q +F N E + RD + + L+ Sbjct: 60 DAALRETAGRPQTGLITRRGLPQDIIPALARQLGAGAVFCNDDDEPAAIARDAQVARSLK 119 Query: 129 HRV-ICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVP---AIRL 184 + + F D + +L +L + V+TP++ A ++ + L + P A +L Sbjct: 120 SQGQLLLRFKDHRIFARDEVLTQSLSPFSVFTPYKNAWLRKITPFYLSAYPSERDLASKL 179 Query: 185 TG-PVTPSN-IPRFFDYPFQAIDPM----FPIGEQNALHILRKFCKEKVYYYVEQRDIPA 238 P + IP D F A D + P G A +L F ++ Y RD PA Sbjct: 180 ADLPDSERRPIPTAADLGF-APDTLAGLRLPTGVSGARQLLADFLP-RLPQYKTARDFPA 237 Query: 239 IQGTSQLSPYLSIGVLSPRQCWNRLKEEFV---DLLIKPKSGAFSWLNELIWREFYRHLM 295 ++G S LS +L G +S R+ RL E D + GA +WL+ELIWR+FY ++ Sbjct: 238 LKGPSYLSVHLRFGTVSIREL-ARLAHEAAHNEDWSAAAREGAATWLSELIWRDFYFQIL 296 Query: 296 AFYPSVCMGKPFIPWTEKIEWNKDSH---LLQAWKQGYTGFPIIDAAMRQLNTIGWMHNR 352 A P V + + F P + IEW + L AW +G TG+P++DAAMRQLN+ G+MHNR Sbjct: 297 AHQPYV-VERSFKPAYDAIEWETGAEADPLFAAWCEGRTGYPLVDAAMRQLNSSGYMHNR 355 Query: 353 LRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPT 412 LRM+TASFLVKDL +DWR GE YF +L D DLA+NNGGWQWAASTG D+ P+FRIFNP Sbjct: 356 LRMVTASFLVKDLGLDWRRGEAYFAEKLNDFDLAANNGGWQWAASTGCDAQPWFRIFNPV 415 Query: 413 IQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKN--------DLSLNYPLPIVDHK 464 Q ++FDP G FI ++PE+ +P++ HAP WL K L +YPLP+VDH Sbjct: 416 TQSEKFDPDGKFIARYVPEVAQLPSKLRHAP--WLAKPLELAEAGIALGRDYPLPVVDHA 473 Query: 465 KACHHTLNQYYAAKKQS 481 A TL +Y KK++ Sbjct: 474 AAREKTLARYGILKKEA 490 >gi|21910695|ref|NP_664963.1| putative deoxyribodipyrimidine photolyase [Streptococcus pyogenes MGAS315] gi|28895615|ref|NP_801965.1| deoxyribodipyrimidine photolyase [Streptococcus pyogenes SSI-1] gi|21904898|gb|AAM79766.1| putative deoxyribodipyrimidine photolyase [Streptococcus pyogenes MGAS315] gi|28810864|dbj|BAC63798.1| putative deoxyribodipyrimidine photolyase [Streptococcus pyogenes SSI-1] Length = 469 Score = 283 bits (723), Expect = 5e-74, Method: Compositional matrix adjust. Identities = 185/492 (37%), Positives = 263/492 (53%), Gaps = 46/492 (9%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 V ++W R DLRI D KAL A S + + VF EQ S QS FI S+L Sbjct: 2 VSVMWFRRDLRIDDQKALAHAI-ASQSPTLCVFQFNNEQLNLLH-SRNQSSFI-TSVLAF 58 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLD-SYCLQQRVTKL-------FYNRQYEINEVRRD 120 +K L +C D + + D C +Q +T+L F + +R Sbjct: 59 RKLL----------KCEGIDLYLMYGDLMTCFEQLLTQLKDWTDVYFNYDESGYGRLRDQ 108 Query: 121 KLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVP 180 K + ++ + ++ D L I+N + Q YKV+TP+ + + QN + + + Sbjct: 109 KAAQFFKKNGIAVHTYQDHYLHGSQEIINQSGQPYKVFTPYYR-IWQNYPKETPIKVELS 167 Query: 181 AIRLTGPVTPSNIPR----FFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDI 236 R TP ++ R F D +Q + +Q L +F ++++ Y RD Sbjct: 168 QGRWLNLETPDDVLRTVESFKDEKYQDVATFDEASKQ-----LNRFIQDQLAAYHANRDF 222 Query: 237 PAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKS-GAFSWLNELIWREFYRHLM 295 PA GTS+LSP+L IG + R ++ +++ P S G ++L EL WR+FY + Sbjct: 223 PAQLGTSRLSPFLRIGAIGIRTVYHAVRQ-------APNSLGQATFLKELAWRDFYNMVY 275 Query: 296 AFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRM 355 YP +P +IEW + Q WK+G TG+PI+DAAM QL GWMHNRLRM Sbjct: 276 VAYPDQ-KTQPIQKAFSQIEWVNNPDWFQLWKEGKTGYPIVDAAMLQLQKTGWMHNRLRM 334 Query: 356 ITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQG 415 I ASFL KDLL DWR+GE+YF QL+D D ASN GGWQWAASTG D+VPYFRIFNP QG Sbjct: 335 IVASFLTKDLLCDWRLGEQYFQQQLIDYDAASNIGGWQWAASTGTDAVPYFRIFNPVTQG 394 Query: 416 KRFDPQGTFIRHWLPELNNVPTQYIHAP---HSWLDKND---LSLNYPLPIVDHKKACHH 469 KRFDP+G FI+ +LP+L +VP +Y+H P +L ++ + +YP PIVDH K Sbjct: 395 KRFDPKGEFIKAYLPQLEHVPEKYLHEPWKMPKYLQESVSCIIGTDYPQPIVDHAKQREQ 454 Query: 470 TLNQYYAAKKQS 481 + +Y AK+++ Sbjct: 455 AIAKYEWAKEKA 466 >gi|313639222|gb|EFS04159.1| deoxyribodipyrimidine photo-lyase [Listeria seeligeri FSL S4-171] Length = 471 Score = 283 bits (723), Expect = 5e-74, Method: Compositional matrix adjust. Identities = 174/483 (36%), Positives = 260/483 (53%), Gaps = 37/483 (7%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSH-FIYASLLQVQ 69 ++W R DLR+ DNKALY AC + D +I +F PEQ+ I+ SH ++S+ + Sbjct: 4 VMWFRRDLRLNDNKALYQACRDKD-DLILLFQVNPEQF----INGSPSHQAFFSSVAYFK 58 Query: 70 KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRV---TKLFYNRQYEINEVRRDKL-LEK 125 + L + H F + + L+ L++++ K+++NR +RD+ L+ Sbjct: 59 QKLDKIA-----HLQIMFGEPMGLLEK--LKEKIPAWDKVYFNRDETGYGAKRDEAALQF 111 Query: 126 RLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVP--AIR 183 + + ++ D+ L + A YKV+TP+ K + + + R LP+ + + Sbjct: 112 FAKEEIEVFAYHDAYLHHANDVKKSATDFYKVFTPYYKKWREEIKE---RPLPISLNSEK 168 Query: 184 LTGPVTPSNIPRFFDYPFQAIDPM--FPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQG 241 + + + F + + P+ +GEQ A + L F KE + Y E RD P + Sbjct: 169 VNKTILFPEEEKQFAEMTRELPPLDATKLGEQAAQNHLNHFVKENLADYNEARDFPDLDK 228 Query: 242 TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSV 301 TS LS +L G +S R W ++E + +G ++ EL WR+FY + +P+ Sbjct: 229 TSHLSRFLRTGEVSIRTVWQAVQE------AEHTNGRATFEKELCWRDFYNMIYVSFPN- 281 Query: 302 CMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFL 361 + IEW + Q W+QG TGFP++DAAMRQL GWMHNRLRMITASFL Sbjct: 282 QKNEAIQANYRFIEWENNRTNFQKWQQGITGFPLVDAAMRQLKETGWMHNRLRMITASFL 341 Query: 362 VKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQ 421 KDLL+DWR GE+YF L+D D ASN GGWQWAASTG D+VPYFRIFNPT Q ++FDP Sbjct: 342 TKDLLIDWRWGEKYFQQMLIDYDPASNIGGWQWAASTGTDAVPYFRIFNPTTQSEKFDPS 401 Query: 422 GTFIRHWLPELNNVPTQYIHAPHSWLDKND------LSLNYPLPIVDHKKACHHTLNQYY 475 G FIR ++ EL +P ++IH P + + +YP PIVDHK+ + +Y Sbjct: 402 GNFIRKYVQELAGLPDKFIHQPEKMTKQEQEKFHLIIGEDYPFPIVDHKERRKLAIARYE 461 Query: 476 AAK 478 +K Sbjct: 462 FSK 464 >gi|296805628|ref|XP_002843638.1| deoxyribodipyrimidine photo-lyase [Arthroderma otae CBS 113480] gi|238844940|gb|EEQ34602.1| deoxyribodipyrimidine photo-lyase [Arthroderma otae CBS 113480] Length = 591 Score = 283 bits (723), Expect = 5e-74, Method: Compositional matrix adjust. Identities = 169/486 (34%), Positives = 246/486 (50%), Gaps = 51/486 (10%) Query: 13 WLRNDLRITDNKAL---YAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69 W ++DLR+ DN++L Y+ N D +I ++I +PE H S + I +L ++ Sbjct: 102 WFKSDLRLQDNRSLHKAYSLARNYDIPLICIYIFSPEDLTAHLCSRPRVDLILRTLAILK 161 Query: 70 KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD-KLLEKRLQ 128 L ++ I D + + C Q ++F N +YE++E+RR+ K++ + Sbjct: 162 SDLEKQDIPLYMETQEKRKDIPKRIVELCKQWGANQIFTNLEYEVDELRREAKIVRLCAR 221 Query: 129 HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQ--ADLRSLPVPAIRLTG 186 +I + DD+ ++ PG + + Y VYTP+ ++ + L++ +L + P R G Sbjct: 222 QGIIFDTEDDTCVVAPGDLSTQQGKQYAVYTPWYRSWVAFLMEHPENLELVDAPT-RNAG 280 Query: 187 --------------PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVE 232 P P+ + + D Q M+P GE A L++F ++ Y E Sbjct: 281 DARKHFEELFHSQVPEAPTYM-QLSDSESQRFREMYPAGEHEADRRLKEFLAKRGNQYHE 339 Query: 233 QRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYR 292 RD + Q TS LSPY S G LS R +E V Sbjct: 340 NRDFMSSQTTSVLSPYFSCGSLSARAAICMAQEANV------------------------ 375 Query: 293 HLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNR 352 +P +CM K P +EW D AW +G TGFPI+DAAMRQL WMHNR Sbjct: 376 ----HWPYICMNKCLNPEFTNLEWEYDLAQFNAWCEGKTGFPIVDAAMRQLKHSAWMHNR 431 Query: 353 LRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPT 412 RMI +SFL KDLL+DWR+GE++FM L+DGD ASN+GGW + +STG D PYFRIFNP Sbjct: 432 TRMIVSSFLSKDLLIDWRLGEQFFMKHLIDGDFASNHGGWGFGSSTGVDPQPYFRIFNPL 491 Query: 413 IQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLN-YPLPIVDHKKACHHTL 471 Q +RFDP G +IRHW+PEL N+ IH P+ + N YP PIV+H ++ L Sbjct: 492 RQSERFDPNGDYIRHWVPELRNIEGSAIHDPYGRGARETAEKNGYPRPIVNHSESRSKAL 551 Query: 472 NQYYAA 477 +Y A Sbjct: 552 ERYKKA 557 >gi|126658357|ref|ZP_01729506.1| deoxyribopyrimidine photolyase [Cyanothece sp. CCY0110] gi|126620289|gb|EAZ91009.1| deoxyribopyrimidine photolyase [Cyanothece sp. CCY0110] Length = 476 Score = 282 bits (722), Expect = 7e-74, Method: Compositional matrix adjust. Identities = 167/472 (35%), Positives = 262/472 (55%), Gaps = 26/472 (5%) Query: 8 SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67 ++ + W R DLR++DN L A S +K++ +F + I+ + +++ L Sbjct: 3 NIIIFWHRRDLRVSDNIGLSQAYQKS-SKLVGLFCLDSNLLNRDDIAPARVNYMLGCLQH 61 Query: 68 VQKSLSQKG---IVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLE 124 +QKS + G ++FQ + L+ C+ F+N E RDK ++ Sbjct: 62 LQKSYQKLGSQLLIFQGEPTKIIPKVADALNVDCV-------FWNNDVEPYSKERDKQVK 114 Query: 125 KRLQHRVI-CKSFDDSVLLPPGSILNHALQM-YKVYTPFRKALIQ----NLVQA--DLRS 176 + L+ + I K++ D +L PG IL + YKVYTPF ++ ++ ++V++ L S Sbjct: 115 EALEEKSIQSKTYWDQLLHAPGEILTKSNNDPYKVYTPFWRSWVKEEKADIVESIEKLES 174 Query: 177 LPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMF-PIGEQNALHILRKFCKEKVYYYVEQRD 235 L I + ++P D + P+ GE A L F +Y Y EQR+ Sbjct: 175 LSDEEINTVKDLGLIDLPTAKDLGYSWDAPLLLEPGETAAKEQLNYFSDNAIYSYQEQRN 234 Query: 236 IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLI-KPKSGAFSWLNELIWREFYRHL 294 +PAI TS+LSP G++ R+ W E + + + + +W E+ WREFY+H Sbjct: 235 LPAIDATSKLSPAFKFGIIGIREVWQATVEAYENTRSDEARENIQTWQQEIAWREFYQHC 294 Query: 295 MAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLR 354 + F+P + G P+ ++ W+ + QAW +G TG+PI+DAAMRQLN GWMHNR R Sbjct: 295 LYFFPELAEG-PYRDEFKEFPWDNNEQHFQAWCEGKTGYPIVDAAMRQLNETGWMHNRCR 353 Query: 355 MITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQ 414 MI ASFL KDL+++W+ GE+YFM +L+DGDL++NNGGWQW+AS+G D P RIFNP Q Sbjct: 354 MIVASFLTKDLIINWQWGEKYFMQKLIDGDLSANNGGWQWSASSGMDPKP-LRIFNPASQ 412 Query: 415 GKRFDPQGTFIRHWLPELNNVPTQ-YIHAPHSWLDKNDLSLNYPLPIVDHKK 465 +++DP G +IR W+PE++++ T+ + L+ + S YP PIVDHK+ Sbjct: 413 AQKYDPDGEYIRLWVPEISSLDTECLVTGKIPPLEAH--SCGYPQPIVDHKQ 462 >gi|317406109|gb|EFV86370.1| deoxyribodipyrimidine photo-lyase [Achromobacter xylosoxidans C54] Length = 277 Score = 282 bits (722), Expect = 8e-74, Method: Compositional matrix adjust. Identities = 135/272 (49%), Positives = 177/272 (65%), Gaps = 3/272 (1%) Query: 203 AIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNR 262 AI ++P GE A L F + Y ++RD P++ TS LSPYL+ GVLSP Q Sbjct: 3 AIRALWPAGESAAGARLDAFADGVIDAYRDERDFPSLPATSCLSPYLAAGVLSPGQALRA 62 Query: 263 LKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHL 322 L K+GA +W+NEL+WREFY+HL+A P++ M +P P T + W Sbjct: 63 ALAANQGELESGKAGAATWINELLWREFYQHLLAACPALSMHQPMKPETAAVPWRDAPDD 122 Query: 323 LQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLD 382 L+AW+QG TG PI+DAAMRQL +GWMHNRLRM+TA FL K+LL+DWR+GE +FM+ L+D Sbjct: 123 LRAWQQGRTGLPIVDAAMRQLLALGWMHNRLRMVTAMFLTKNLLIDWRLGEAWFMAHLVD 182 Query: 383 GDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHA 442 GDLA+NNGGWQW+ASTG DSVPYFR+FNP Q ++FDP+G F+R WLPEL ++ IH Sbjct: 183 GDLAANNGGWQWSASTGADSVPYFRVFNPLSQSRKFDPRGVFLREWLPELAHLDDNAIHD 242 Query: 443 PHSWLDKNDLSLNYPLPIVDHKKACHHTLNQY 474 P + YP PIVD ++ L + Sbjct: 243 PSP---MERAAAGYPAPIVDLPQSRLRALEAF 271 >gi|113867687|ref|YP_726176.1| deoxyribodipyrimidine photolyase [Ralstonia eutropha H16] gi|113526463|emb|CAJ92808.1| deoxyribodipyrimidine photolyase [Ralstonia eutropha H16] Length = 513 Score = 282 bits (722), Expect = 9e-74, Method: Compositional matrix adjust. Identities = 189/501 (37%), Positives = 260/501 (51%), Gaps = 50/501 (9%) Query: 11 LVWLRNDLRITDNKAL-YAACHNSDAKVIAVF---IATPEQWRQHGISARQSHFIYASLL 66 LVW R DLR D+ AL YA H + VF I P R + R+ FI SL Sbjct: 29 LVWFRRDLRADDHAALHYALKHCRQVWCVFVFDREILDPLIARGRKVD-RRVEFILRSLE 87 Query: 67 QVQKSLSQKG---IVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLL 123 ++++L+ G IV D + + + + +F N YE RRD + Sbjct: 88 PLRRTLTDAGGGLIVLD-------DIARDAIPRLAAELDADAVFTNHDYEPAAKRRDTAV 140 Query: 124 EKRL--QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPA 181 + L RV+ +F D V+ +L Q + V+ P++ A ++ + DLR P P Sbjct: 141 RQALASDSRVLF-TFKDQVIFEADELLTGQGQPFSVFAPYKNAWLRAVQPFDLR--PYPV 197 Query: 182 IRLTGPVTP------SNIPRFFDYPFQA---IDPMFPIGEQNALHILRKFCKEKVYYYVE 232 + G + P P D F A + P G A + +F +++ Y Sbjct: 198 DQYLGALAPVPRQYQKASPMLHDLGFAASNLAEIAMPTGSDGARALFDEFI-DRIGDYGY 256 Query: 233 QRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKS---GAFSWLNELIWRE 289 +RD P+++G S LS +L G +S R L +D +++ S GA WL+ELIWR+ Sbjct: 257 RRDFPSLRGPSYLSVHLRFGTISIRT----LARAALDAVLRGGSESAGAAVWLSELIWRD 312 Query: 290 FYRHLMAFYPSVCMGKPFIPWTEKIEWNKD---SHLLQAWKQGYTGFPIIDAAMRQLNTI 346 FY ++ +P V GK F P + ++W QAW TG+P++DAAM Q+ Sbjct: 313 FYFMILHHHPRVADGKSFRPEYDALQWVDSVTGDKYFQAWCDAQTGYPLVDAAMLQIRQS 372 Query: 347 GWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYF 406 G+MHNRLRM+TASFLVKDL VDWR GE+YF QL D D ++NNGGWQWAASTG D+ PYF Sbjct: 373 GYMHNRLRMVTASFLVKDLGVDWRRGEQYFADQLNDFDFSANNGGWQWAASTGCDAQPYF 432 Query: 407 RIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND--------LSLNYPL 458 RIFNP Q ++FDPQG FIR +LP L +P QYIHAP W + L NYP Sbjct: 433 RIFNPVKQSEKFDPQGRFIRKYLPVLAQMPDQYIHAP--WTAPVNVLATAGVKLGENYPP 490 Query: 459 PIVDHKKACHHTLNQYYAAKK 479 PIV H+ A TL +Y A +K Sbjct: 491 PIVQHEVARKQTLERYAAIRK 511 >gi|302498692|ref|XP_003011343.1| hypothetical protein ARB_02402 [Arthroderma benhamiae CBS 112371] gi|291174893|gb|EFE30703.1| hypothetical protein ARB_02402 [Arthroderma benhamiae CBS 112371] Length = 565 Score = 282 bits (721), Expect = 1e-73, Method: Compositional matrix adjust. Identities = 173/489 (35%), Positives = 243/489 (49%), Gaps = 45/489 (9%) Query: 13 WLRNDLRITDNKALYAA---CHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69 W + DLR+ DN++L+ A + + +I ++I +PE H S + I +L ++ Sbjct: 102 WFKQDLRLQDNRSLHRAYNFARDHNIPLICLYIFSPEDLTAHLCSPPRVDLILRTLATLK 161 Query: 70 KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD-KLLEKRLQ 128 LS+K I + C + LF N +YE++E+RR+ KL Sbjct: 162 SGLSKKDIPLYMESIKRRKRIPSRIVELCKTWGASHLFANIEYEVDELRREAKLTRLCAT 221 Query: 129 HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQ--ADLRSLPVPAIRLTG 186 +I S DD+ ++ PG + + Y VYTP+ ++ + L Q +L + PA+ Sbjct: 222 QGIIFDSEDDACVVAPGELSTQQGKQYAVYTPWYRSWVAYLKQHPENLELVDAPAVNAGD 281 Query: 187 -------------PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQ 233 P+ P+ + + + + M+P GEQ A LR+F EK Y + Sbjct: 282 ARKHFKDLFDSAVPIAPNQM-KLSEAEQERFKKMYPEGEQEATRRLREFLSEKGKQYHSK 340 Query: 234 RDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRH 293 RD + Q TS LSPY S G LS R + L+I S + Sbjct: 341 RDFMSSQFTSVLSPYFSCGALSARTAPFIEAMKLCGLVITDDSSS--------------- 385 Query: 294 LMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRL 353 M K F P +EW DS AW +G TGFPI+DAAMRQL WMHNR Sbjct: 386 ---------MNKCFKPEFTDLEWEYDSTQFDAWCEGKTGFPIVDAAMRQLKHCAWMHNRT 436 Query: 354 RMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTI 413 RMI +SFL KDLL+DWR GE++FM L+DGD ASN+GGW + +STG D PYFRIFNP Sbjct: 437 RMIVSSFLSKDLLIDWRRGEQFFMLHLIDGDFASNHGGWGFGSSTGVDPQPYFRIFNPLR 496 Query: 414 QGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLN-YPLPIVDHKKACHHTLN 472 Q +RFDP G +IRHW+PEL +V IH P+ + N YP PIV+H ++ L Sbjct: 497 QSERFDPDGDYIRHWVPELRDVEGSAIHDPYGRGAEEIAEKNGYPRPIVNHTESRERALE 556 Query: 473 QYYAAKKQS 481 +Y A S Sbjct: 557 KYKKAAHGS 565 >gi|187921432|ref|YP_001890464.1| Deoxyribodipyrimidine photo-lyase [Burkholderia phytofirmans PsJN] gi|187719870|gb|ACD21093.1| Deoxyribodipyrimidine photo-lyase [Burkholderia phytofirmans PsJN] Length = 499 Score = 282 bits (721), Expect = 1e-73, Method: Compositional matrix adjust. Identities = 179/503 (35%), Positives = 262/503 (52%), Gaps = 49/503 (9%) Query: 6 AMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATP-------EQWRQHGISA--- 55 + LVW R DLR TDN ALY A + + +V VF+ E W+ Sbjct: 10 SFDTGLVWFRRDLRSTDNAALYYALKHCE-RVWCVFVFDTTILQPLVEAWQARHPDTQPQ 68 Query: 56 -RQSHFIYASLLQVQKSLSQKG---IVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQ 111 R+ I +L ++ ++L G IV + D + + + V +F N Sbjct: 69 DRRIELILGALGELDEALRANGGGLIVL-------YGDPADLVPKLADELGVDAVFANHD 121 Query: 112 YEINEVRRDKLLEKRL-QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLV 170 YE + RD+ + + L + +F D V+ +L + + V+TP++ A ++ L Sbjct: 122 YEPVAIARDETVRETLAEAGRQWLTFKDQVIFERDEVLTGQNKPFTVFTPYKNAWLKQLT 181 Query: 171 QADLRSLPVPAIRLTGPVTPSNIPRFFDY-------PFQAIDPMFPIGEQNALHILRKFC 223 DL+ PV + PS + R P + P G A +L F Sbjct: 182 AFDLKPYPVESYTKHLAAPPSKLDRRLPTLDQLGFAPSNLAELDLPAGMSGAQRLLDDFA 241 Query: 224 KEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKS-GAFSWL 282 ++ Y ++RD PA +G S LS +L G +S R RL E + ++P G+ +WL Sbjct: 242 T-RIDSYKDRRDFPAAKGPSYLSIHLRFGTVSIRTL-ARLAHE---MSLQPDGEGSTTWL 296 Query: 283 NELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKD---SHLLQAWKQGYTGFPIIDAA 339 +ELIWR+FY ++A +P + G F +++ W + AW G TG+P++DAA Sbjct: 297 SELIWRDFYFMILAHHPRLANGASFKEEYDQLRWEQGPEADEAFAAWCDGRTGYPLVDAA 356 Query: 340 MRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTG 399 M QLN G+MHNRLRM+TASFLVKDL VDWR+GE YF QL D D ++NNGGWQWAASTG Sbjct: 357 MLQLNRTGYMHNRLRMVTASFLVKDLGVDWRLGERYFAQQLNDFDFSANNGGWQWAASTG 416 Query: 400 NDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND-------- 451 D+ PYFRIFNP Q ++FD +G FI+ +LP+L +P+++IHAP WL + Sbjct: 417 CDAQPYFRIFNPITQSEKFDAEGRFIKRYLPQLARLPSKWIHAP--WLAGTERLAEFGVV 474 Query: 452 LSLNYPLPIVDHKKACHHTLNQY 474 L +YP PIVDH +A TL ++ Sbjct: 475 LGKDYPAPIVDHAEARARTLARF 497 >gi|746118|prf||2017201A DNA photolyase Length = 486 Score = 282 bits (721), Expect = 1e-73, Method: Compositional matrix adjust. Identities = 178/487 (36%), Positives = 252/487 (51%), Gaps = 56/487 (11%) Query: 8 SVHLVWLRNDLRITDNKAL---YAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYAS 64 S+ VW R D R+ D+ AL A K +A F P + + + + + Sbjct: 12 SLKAVWFRRDFRLHDHTALKHAIEAIEKHGGKWLAFFYLDP---KTASVEPVHHDYFFQT 68 Query: 65 LLQVQKSLSQKGI-------VFQYHQCSNFDDSIEWLDS-YCLQQRVTKLFYNRQYEINE 116 ++Q ++ L G + Q S + +D+ Y RV + Sbjct: 69 VMQFKQMLKTNGGDLYIITGTIEGGQLSKLLQAFPEIDAVYANDDRVG----------DG 118 Query: 117 VRRDKLLEKRLQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQN------L 169 RD+ E L + I +F+D+ L P +L YKV+TP+ KA + + Sbjct: 119 RLRDEAAEHFLAKQSIPFYTFEDAYLTEPDQVLKKDGTPYKVFTPYYKAWAKERKRTPAV 178 Query: 170 VQADLRSLPVPAIRLTGPVTPS-----NIPRFFDYPFQAIDPMFPIGEQNALHILRKFCK 224 ++ D+ L + T P + N+ + Y + A IGE++A+ L+ F K Sbjct: 179 IKRDV--LLGSVHKGTAPDREAETLFNNLIKKCSYDWSA------IGEEHAIKRLQMFTK 230 Query: 225 EKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNE 284 +++ Y RD P+I GTS+LSPY+ G +S R + + D A ++L E Sbjct: 231 KRLSGYKANRDFPSITGTSRLSPYIKTGAVSSRSIYYHILNAEAD-----SYSAETFLKE 285 Query: 285 LIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLN 344 L WR+FYR ++ FY C + + ++ W+ D L +WK+G TGFPI+DA MRQL Sbjct: 286 LAWRDFYR-MVHFYEPDCKDREIMEGYRELNWSHDQDDLTSWKRGETGFPIVDAGMRQLL 344 Query: 345 TIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVP 404 GWMHNRLRMITASFL KDLL+DWR+GE YF L+D D +SN GGWQWAAS G D+VP Sbjct: 345 NEGWMHNRLRMITASFLTKDLLIDWRLGERYFERMLIDYDPSSNIGGWQWAASVGTDAVP 404 Query: 405 YFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND------LSLNYPL 458 YFRIFNP Q KRFD GT+IR ++PELN+VP YIH P ++ L +YPL Sbjct: 405 YFRIFNPVTQSKRFDENGTYIRTYIPELNHVPDHYIHEPWKMSEEEQVKYKCRLDEDYPL 464 Query: 459 PIVDHKK 465 PIVDH K Sbjct: 465 PIVDHSK 471 >gi|121594169|ref|YP_986065.1| deoxyribodipyrimidine photo-lyase type I [Acidovorax sp. JS42] gi|120606249|gb|ABM41989.1| deoxyribodipyrimidine photo-lyase type I [Acidovorax sp. JS42] Length = 488 Score = 281 bits (720), Expect = 1e-73, Method: Compositional matrix adjust. Identities = 177/487 (36%), Positives = 252/487 (51%), Gaps = 35/487 (7%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFI-------ATPEQWRQHGISARQSHFIYA 63 LVWLR DLR D+ ALY A + +V VF+ A P + R+ FI+A Sbjct: 6 LVWLRRDLRCHDHAALYHALRRFE-RVYCVFVFDTDILDALPTR------CDRRVEFIHA 58 Query: 64 SLLQVQ---KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120 S+ + ++L+ + +++ + V ++ NR YE + RD Sbjct: 59 SVCALDEDLRALAARSGAPGGGLIVRHGTAVQCIVQLARSLGVREVLANRDYEPAALARD 118 Query: 121 KLLEKRLQHRVICKS-FDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPV 179 + + L I S + D VLL G +LN Q Y V+TP+++ +Q L + PV Sbjct: 119 RRVADGLAACGIAFSDYKDQVLLEQGEVLNQQGQPYSVFTPYKRTWLQKLDAFQTKPYPV 178 Query: 180 P--AIRLTGPVTPSNIPRFFD---YPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQR 234 A L P +P D P D P+G + A +L+ F Y + R Sbjct: 179 ERHAQHLAVPPAGERLPTLADLGFVPTNLADLQLPVGSRGAQQLLQDFLPRMAAYKLA-R 237 Query: 235 DIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHL 294 D P +G S LS +L G +S RQ L + GA +WL+EL WR+FY + Sbjct: 238 DFPGRKGVSYLSVHLRFGTVSIRQ----LASLAARQAAQGCQGAQTWLSELAWRDFYFMI 293 Query: 295 MAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLR 354 + +P V + + F P ++++W+ QAW TG+P++DAAMRQL G+MHNRLR Sbjct: 294 LWHHPHV-VTQAFRPEYDRVQWDDAPEYWQAWCAARTGYPLVDAAMRQLLQTGYMHNRLR 352 Query: 355 MITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQ 414 M+ ASFL KDL +DWR GE +F L D DLA+NNGGWQWAASTG D+ P+FRIFNP Q Sbjct: 353 MVVASFLTKDLGIDWRRGERFFAQHLNDYDLAANNGGWQWAASTGCDAQPWFRIFNPVAQ 412 Query: 415 GKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKN------DLSLNYPLPIVDHKKACH 468 ++FDP G FIR +LPEL VP +++H P L ++YPLP+VDH A Sbjct: 413 SQKFDPDGRFIRRYLPELACVPDKHLHFPAGMKPLELQACGLRLGIDYPLPVVDHASARE 472 Query: 469 HTLNQYY 475 TL +++ Sbjct: 473 RTLMRFH 479 >gi|296105770|ref|YP_003617470.1| deoxyribodipyrimidine photo-lyase [Legionella pneumophila 2300/99 Alcoy] gi|295647671|gb|ADG23518.1| deoxyribodipyrimidine photo-lyase [Legionella pneumophila 2300/99 Alcoy] Length = 471 Score = 281 bits (720), Expect = 1e-73, Method: Compositional matrix adjust. Identities = 176/491 (35%), Positives = 267/491 (54%), Gaps = 41/491 (8%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M++ LVW R DLR+TDN A AC + + +I ++I + + Q+ +++ SL+ Sbjct: 1 MTIALVWFRQDLRLTDNPAFIEACSHHET-IIPLYIYDD---KCSVLGQAQAWWLHHSLI 56 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 + KSL+Q+G+ + S + +E + Y L+ +++NR YE + RDK ++ Sbjct: 57 ALGKSLNQQGLSLVLRKGSPLEIILELVTQYGLE----SVYWNRCYEPQVIARDKKIKLA 112 Query: 127 LQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185 L + I SF+ ++L P +I N +KV+TP+ K Q L ++P P + Sbjct: 113 LGEKGIKVHSFNGNLLHEPWTIKNKNGDFFKVFTPYWKQCRQIL------NIPSPFMLTK 166 Query: 186 GP----VTPSNIPRFFDYPF----QAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIP 237 P +T ++ ++ P + GE+ A L +F + Y +RD P Sbjct: 167 RPRGIEITSDDLGKWKLLPAINWAARFSEYWTPGEEGAQKKLNEFVVHHLSGYKRERDFP 226 Query: 238 AIQGTSQLSPYLSIGVLSPRQCWNRLK----EEFVDLLIKPKSGAFSWLNELIWREFYRH 293 A TS+LSP+L G +SP L+ E+ DL + +L+EL WREF + Sbjct: 227 AKNATSRLSPHLHFGEISPWVILRALELAKLEQTCDL-----ASLEHFLSELGWREFSVY 281 Query: 294 LMAFYPSV-CMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNR 352 L+ +P + C + F + W D LL W++G TG+PIIDA MR+L G+MHNR Sbjct: 282 LLYHFPKLDC--ENFRKEFDAFPWQNDEQLLTCWQKGMTGYPIIDAGMRELWATGYMHNR 339 Query: 353 LRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPT 412 +RMI ASFL KDLL+DWR G ++F+ L+D DLA+N+ WQW A G D+ PYFRIFNP Sbjct: 340 VRMIVASFLTKDLLIDWRSGAQWFLDTLVDADLANNSASWQWVAGCGADAAPYFRIFNPV 399 Query: 413 IQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSL----NYPLPIVDHKKACH 468 +Q ++FDP G +IR W+PEL + +Q IH P W D N S+ YP PI+DH++A Sbjct: 400 LQSQKFDPDGVYIRQWIPELAQLNSQSIHQP--WTDANASSIFLGKKYPKPIIDHQEART 457 Query: 469 HTLNQYYAAKK 479 L+ Y KK Sbjct: 458 KALSYYQQIKK 468 >gi|289433865|ref|YP_003463737.1| hypothetical protein lse_0498 [Listeria seeligeri serovar 1/2b str. SLCC3954] gi|289170109|emb|CBH26649.1| phrB [Listeria seeligeri serovar 1/2b str. SLCC3954] Length = 471 Score = 281 bits (718), Expect = 2e-73, Method: Compositional matrix adjust. Identities = 174/484 (35%), Positives = 260/484 (53%), Gaps = 39/484 (8%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSH-FIYASLLQVQ 69 ++W R DLR+ DNKALY AC + D +I +F PEQ+ I+ SH ++S+ + Sbjct: 4 VMWFRRDLRLNDNKALYQACRDKD-DLILLFQVNPEQF----INGSPSHQAFFSSVAYFK 58 Query: 70 KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRV---TKLFYNRQYEINEVRRDKL-LEK 125 + + + H F + + L+ L++++ K+++NR +RD+ L+ Sbjct: 59 QKVDETA-----HLQIMFGEPMGLLEK--LKEKIPAWDKVYFNRDETGYGAKRDEAALQF 111 Query: 126 RLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPV---PAI 182 + + ++ D+ L + A YKV+TP+ K + + + R LP+ P Sbjct: 112 FAKEEIEVFAYHDAYLHHADDVKKSATDFYKVFTPYYKKWREEIKE---RPLPISINPEK 168 Query: 183 RLTGPVTPSNIPRFFDYPFQAIDPM--FPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ 240 + P + +F + + + P+ +GE A L F KE + Y E RD P + Sbjct: 169 VNNTILFPEDEKQFVEMT-RELPPLDATKLGELAAQSHLNHFVKENLADYNEARDFPDLD 227 Query: 241 GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPS 300 TS LS +L G +S R W ++E + +G ++ EL WR+FY + +P+ Sbjct: 228 KTSHLSRFLRTGEVSIRTVWQAVQE------AEHTNGRATFEKELCWRDFYNMIYVSFPN 281 Query: 301 VCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASF 360 + IEW + Q W+QG TGFP++DAAMRQL GWMHNRLRMITASF Sbjct: 282 -QKNEAIQANYRFIEWENNRTNFQKWQQGATGFPLVDAAMRQLKETGWMHNRLRMITASF 340 Query: 361 LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDP 420 L KDLL+DWR GE+YF L+D D ASN GGWQWAASTG D+VPYFRIFNPT Q ++FDP Sbjct: 341 LTKDLLIDWRWGEKYFQQMLIDYDPASNIGGWQWAASTGTDAVPYFRIFNPTTQSEKFDP 400 Query: 421 QGTFIRHWLPELNNVPTQYIHAPHSWLDKND------LSLNYPLPIVDHKKACHHTLNQY 474 G FIR ++ EL +P ++IH P ++ + +YP PIVDHK+ + +Y Sbjct: 401 SGNFIRKYVQELAGLPDKFIHQPEKMTNQEQEKFHLIIGEDYPFPIVDHKERRKLAIARY 460 Query: 475 YAAK 478 +K Sbjct: 461 EFSK 464 >gi|148657549|ref|YP_001277754.1| deoxyribodipyrimidine photolyase [Roseiflexus sp. RS-1] gi|148569659|gb|ABQ91804.1| Deoxyribodipyrimidine photo-lyase type I [Roseiflexus sp. RS-1] Length = 491 Score = 281 bits (718), Expect = 2e-73, Method: Compositional matrix adjust. Identities = 177/493 (35%), Positives = 252/493 (51%), Gaps = 32/493 (6%) Query: 13 WLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQKSL 72 W R DLR+ DN AL A S +VI +FI + F+ A+L + SL Sbjct: 6 WFRRDLRLRDNPALSGAAARSGGRVIPLFILDDAILHAPRTGMARVAFMIAALRDLDASL 65 Query: 73 SQKG--IVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH- 129 +G +V + + S+ L + +NR Y +RD+ +E L+ Sbjct: 66 RARGSRLVVRRGRPSDV------LRDLVGATGAVGVSWNRDYTPFARQRDQHIEAMLRDL 119 Query: 130 RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRK---ALIQNLVQADLRSLPVPAIR-LT 185 V D+V++ P + + Y VYTP+R+ AL++ LR+ P ++ + Sbjct: 120 NVATFIAADAVIMEPDDVRTDDGRPYTVYTPYRRRWRALVEQRRDDVLRAYEPPVLQPVP 179 Query: 186 GPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYY----YVEQRDIPAIQG 241 V IP D I + GE L F + + Y + R++ A Sbjct: 180 DGVADLPIPDNPDLDVSVIQRIPAGGETTGAARLAAFLDPRATHGIAGYADGRNLLAEPA 239 Query: 242 TSQLSPYLSIGVLSPRQCW-------NRLKEE-FVDLLIKPKSGAFSWLNELIWREFYRH 293 TS+LSPYL G ++PR +R EE + +W+ EL WR+FY Sbjct: 240 TSRLSPYLRFGCVAPRAALRAALNLLDRAGEEQDAECAATLTRSIETWIGELAWRDFYYQ 299 Query: 294 LMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRL 353 ++ +P V + F P + +EW D L AWK+G TG+P++DAAMRQLN WMHNR Sbjct: 300 ILWHHPHV-LRSAFKPQYDALEWENDPALFDAWKEGRTGYPVVDAAMRQLNREAWMHNRA 358 Query: 354 RMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTI 413 RMI ASFL KDLL+DWR GE YFM QL+DGD A+NNGGWQW+A TG D+ PYFRIFNP Sbjct: 359 RMIVASFLTKDLLIDWRWGERYFMQQLVDGDHAANNGGWQWSAGTGTDAQPYFRIFNPVS 418 Query: 414 QGKRFDPQGTFIRHWLPELNNVPTQYIHAPHS--WLDKNDLSL----NYPLPIVDHKKAC 467 QG+ FDP+G ++R +LPEL VP +YIHAP + + ++ + +YP P+VDH + Sbjct: 419 QGQTFDPKGAYVRRYLPELEAVPDRYIHAPWTMPYAEQQRCGVIIGRDYPAPVVDHAERR 478 Query: 468 HHTLNQYYAAKKQ 480 L Y A + Sbjct: 479 ARALALYRAVSSR 491 >gi|118594490|ref|ZP_01551837.1| deoxyribodipyrimidine photo-lyase [Methylophilales bacterium HTCC2181] gi|118440268|gb|EAV46895.1| deoxyribodipyrimidine photo-lyase [Methylophilales bacterium HTCC2181] Length = 465 Score = 280 bits (717), Expect = 3e-73, Method: Compositional matrix adjust. Identities = 175/489 (35%), Positives = 253/489 (51%), Gaps = 47/489 (9%) Query: 12 VWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQS-HFIYASLLQVQK 70 +W R DLR+ DN AL+ A SD V VFI Q FI+ +L +++ Sbjct: 1 MWFRRDLRLHDNHALHHALSQSD-NVYCVFIFDKNILNDLKSKEDQRIEFIWEALSEMKA 59 Query: 71 SL-SQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD-KLLEKRLQ 128 SL S + H D I + + LF+N+ YE +RD +++E Q Sbjct: 60 SLNSLSSDITVIH-----GDPIHAIPLLLKKYDCEALFFNKDYESYANKRDMRIMEHIQQ 114 Query: 129 HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFR---------KALIQNLVQADLRSLPV 179 F D+VL IL+ A + Y V++P++ K + Q + + RS Sbjct: 115 SSADAYQFKDTVLFEEKEILSQADKPYTVFSPYKNNHLAKLYQKGITQYDCENNKRSFAK 174 Query: 180 PAIRL-----TGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQR 234 I + T +N+ + P G +L F K ++ Y +R Sbjct: 175 IKIEKLLSLDSLGFTKTNLSKL----------AIPTGSSGGRSLLLDFEK-RIDQYKLKR 223 Query: 235 DIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHL 294 D P +G S LS + G +S ++E+ + + K G+ WLNELIWR+FY + Sbjct: 224 DYPGKKGVSYLSVHNRFGTIS-------IREQALIAINKQSEGSLVWLNELIWRDFYFQI 276 Query: 295 MAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLR 354 ++ +P + GK F P ++ + + +AWK G TGFPIIDAAM QLN G+MHNRLR Sbjct: 277 LSNFPHINDGKSFKPQFNQLRFENNVTFFEAWKNGRTGFPIIDAAMHQLNKTGFMHNRLR 336 Query: 355 MITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQ 414 MI ASFLVKDLL+DWR GE YF +L+D D ++NNGGWQWAASTG D+ P+FRIFNP +Q Sbjct: 337 MIVASFLVKDLLIDWRWGESYFAEKLIDFDFSANNGGWQWAASTGCDAQPWFRIFNPLLQ 396 Query: 415 GKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKN------DLSLNYPLPIVDHKKACH 468 ++FDP+G FI+ +LP+L + + IH PH + +K+ L +YP PI+DH Sbjct: 397 SEKFDPEGLFIKKYLPQLTPLSAKEIHRPHFFYEKDPDTFKVKLGEDYPFPIIDHAIQRQ 456 Query: 469 HTLNQYYAA 477 L+ Y A Sbjct: 457 KALSMYQAT 465 >gi|241662182|ref|YP_002980542.1| deoxyribodipyrimidine photo-lyase [Ralstonia pickettii 12D] gi|240864209|gb|ACS61870.1| Deoxyribodipyrimidine photo-lyase [Ralstonia pickettii 12D] Length = 518 Score = 280 bits (717), Expect = 3e-73, Method: Compositional matrix adjust. Identities = 183/496 (36%), Positives = 254/496 (51%), Gaps = 45/496 (9%) Query: 11 LVWLRNDLRITDNKAL-YAACHNSDAKVIAVFIATP-EQWRQHGISA-RQSHFIYASLLQ 67 LVW R DLR D+ AL YA H + + VF + G+ A R+ FI AS+ + Sbjct: 21 LVWFRRDLRHVDHAALHYALRHCREVYCVFVFDRDILDALLARGLKADRRVEFIRASIEE 80 Query: 68 VQKSLSQKG---IVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLE 124 ++ +L + G IV H + Q V +F N E + RD+ + Sbjct: 81 LRGALREAGGDLIVVHDHPRHA-------IPEIARQLNVEAVFANHDEEPSAQARDEAVR 133 Query: 125 KRLQHRVICKSFD--DSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPV--- 179 K L + C FD D V+ ILN + Y V+TP++ A + L DLR+ P Sbjct: 134 KALAQQP-CAWFDFKDQVIFERDEILNGQGKPYGVFTPYKNAWLAALTPLDLRAYPTEPY 192 Query: 180 ------PAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQ 233 P L P F I P G +L +F +E++ Y + Sbjct: 193 FGALARPPEALAQPTPALEAMGFARTNLSEI--ALPSGMSGGQTLLDEF-EERMDDYHAR 249 Query: 234 RDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRH 293 RD PA++G S LS +L G +S R R +++ GA +WL+EL+WR+FY Sbjct: 250 RDFPAVRGPSYLSTHLRFGTVSIRTLAARAHAA----MLRGSRGAATWLSELVWRDFYFM 305 Query: 294 LMAFYPSVCMGKPFIPWTEKIEW---NKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMH 350 ++ P + G F P ++I W + +AWK TG+P++DAAM Q+ G+MH Sbjct: 306 ILHHRPDLADGAAFHPEFDRIRWVDGDTGDARFEAWKAARTGYPLVDAAMLQIFQSGYMH 365 Query: 351 NRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFN 410 NRLRM+ ASFL+KDL +DWR GE+YF L D D A+NNGGWQWAAS+G D+ P+FRIFN Sbjct: 366 NRLRMVAASFLIKDLGIDWRRGEQYFADVLNDFDFAANNGGWQWAASSGCDAQPWFRIFN 425 Query: 411 PTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND--------LSLNYPLPIVD 462 P Q ++FDPQG FIR +LP+L +P +YIHAP W + L YPLPIVD Sbjct: 426 PVTQSEKFDPQGRFIRKYLPQLAKLPDKYIHAP--WTAPANVLKEASVVLGETYPLPIVD 483 Query: 463 HKKACHHTLNQYYAAK 478 H A TL++Y K Sbjct: 484 HAAARAATLDRYAVTK 499 >gi|229918519|ref|YP_002887165.1| Deoxyribodipyrimidine photo-lyase [Exiguobacterium sp. AT1b] gi|229469948|gb|ACQ71720.1| Deoxyribodipyrimidine photo-lyase [Exiguobacterium sp. AT1b] Length = 450 Score = 280 bits (717), Expect = 3e-73, Method: Compositional matrix adjust. Identities = 177/474 (37%), Positives = 252/474 (53%), Gaps = 36/474 (7%) Query: 11 LVWLRNDLRITDNKALYAACHNSDA--KVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 + W R+D R+TDN L+ + + + VF P+ H R +F ++++ Sbjct: 4 ICWFRSDFRLTDNHMLHRVLKDMEEGDDLDFVFWLNPKYC--HPFEVRHDYF-FSTMRTF 60 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQY-EINEVRRDKLLEKRL 127 L KG+ + D ++ L + L++N +Y E + R D+++E L Sbjct: 61 MDDLEAKGLGLRVLVAETEDAFVKQLGEMDV------LYFNAEYVEPFKQRDDRVIEA-L 113 Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187 V D L P + + YKV+TPF+KA A V RL+ Sbjct: 114 SEDVKVVRLLDRHLFHPDAFRTKSGDPYKVFTPFKKAAYAEQPPA---PYEVDVNRLSQY 170 Query: 188 V-----TPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGT 242 + PS + F + +GE A L +F +++ Y E+RDIP+I GT Sbjct: 171 IRSKNEQPSELKELFK---RCKREWKGLGETEAKKRLTRFVNDRMVDYDEKRDIPSIAGT 227 Query: 243 SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVC 302 S+LSPYL GVLS R ++ L + G ++ +EL+WREFY +MA + + Sbjct: 228 SRLSPYLRTGVLSIRTITEQV------LSARQSKGRDTYYDELLWREFYYMVMAKFHGL- 280 Query: 303 MGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLV 362 +PF + IEW + + W G TG+PI+DAAMRQLN GWMHNRLRMI ASFL Sbjct: 281 KDQPFNDKYKSIEWEDNEEQFEKWCNGETGYPIVDAAMRQLNETGWMHNRLRMIVASFLS 340 Query: 363 KDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQG 422 K LL+DWR GE YF +L+D + ASN GGWQWAAS G D+VPYFRIFNPT Q +RFDP G Sbjct: 341 KHLLLDWRKGERYFEQKLIDYEAASNIGGWQWAASVGTDAVPYFRIFNPTTQSERFDPDG 400 Query: 423 TFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYA 476 TFIR ++PEL +V + IH P +++D Y +P+VDHK+A L ++ A Sbjct: 401 TFIRKYVPELKHVSDKSIHFPDP-SERDD----YAMPLVDHKEARERALERFKA 449 >gi|284054552|ref|ZP_06384762.1| Deoxyribodipyrimidine photo-lyase [Arthrospira platensis str. Paraca] Length = 474 Score = 280 bits (717), Expect = 3e-73, Method: Compositional matrix adjust. Identities = 175/472 (37%), Positives = 247/472 (52%), Gaps = 34/472 (7%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 L W R DLRI+DN L AA ++V+ VF PE I+ + ++ L +Q+ Sbjct: 6 LFWHRRDLRISDNWGL-AAARRVTSQVVGVFCLDPEILSGDDIAPVRVAYMLGCLQCLQE 64 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130 + G Q D+ + L + +++NR E +RD+ +E+ L Sbjct: 65 DYQRGGSQLLIIQ----DNPAQGLRKLAVALGAIAIYWNRDVEPLPRQRDRSVEESLTEV 120 Query: 131 VI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQN--------LVQADLRSLPVPA 181 I ++F D VL P +I + + YKVYTP+ + IQ L L A Sbjct: 121 GIKVETFWDQVLHSPEAIFTGSKEPYKVYTPYWRKWIQQPKPEPCQRLKSTGLTEAQEKA 180 Query: 182 IRLTGPVTPSNIPRFFDYPFQAIDP-MFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ 240 G + +P D F +P + GE A L FC +Y Y E R+ PAI Sbjct: 181 ALEAGAIA---LPTAKDLGFIWSEPFILEPGETAASDRLEIFCDRAIYEYDEGRNFPAID 237 Query: 241 GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAF---SWLNELIWREFYRHLMAF 297 GTS LSP L G + R W + +E + L + +W EL WREFY+ + Sbjct: 238 GTSVLSPALRFGAIGIRTLWQKTQE--IMALTRSDEARHHIQTWQQELAWREFYQQALYH 295 Query: 298 YPSVCMG---KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLR 354 +P++ G +PF ++ W+ + QAW QG TG+PI+DAAMRQLN GWMHNR R Sbjct: 296 FPALATGAFRQPF----DRFPWSDNQEHFQAWCQGRTGYPIVDAAMRQLNETGWMHNRCR 351 Query: 355 MITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQ 414 MI ASFL KDL+++W+ GE+YFM L+DGDLASNNGGWQW++S+G D P RIFNP Q Sbjct: 352 MIVASFLTKDLIINWQWGEKYFMQTLIDGDLASNNGGWQWSSSSGMDPKP-LRIFNPASQ 410 Query: 415 GKRFDPQGTFIRHWLPELNNVPTQY-IHAPHSWLDKNDLSLNYPLPIVDHKK 465 +++DP+ +IR WLPEL N+ T + + S D+ + YP PIVDH + Sbjct: 411 TQKYDPEAEYIRQWLPELRNLDTAHLVTGKISSGDRQ--ACGYPQPIVDHNR 460 >gi|159027902|emb|CAO89709.1| unnamed protein product [Microcystis aeruginosa PCC 7806] Length = 474 Score = 280 bits (717), Expect = 3e-73, Method: Compositional matrix adjust. Identities = 175/472 (37%), Positives = 247/472 (52%), Gaps = 36/472 (7%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 L W R DLR++DN L A S K+I VF P I+ + ++ L +++K Sbjct: 6 LFWHRRDLRLSDNIGLSKARERS-PKIIGVFCLDPAILEGDDIAPARVAYLLGCLEELEK 64 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130 + QKG + + L + +F+N E +RD+ + LQ + Sbjct: 65 NYRQKGSQLLIIR----GKPSQTLVNLAGNLSAKAVFFNLDIEPYARQRDQQVIAALQTK 120 Query: 131 VI-CKSFDDSVLLPPGSILNHALQMYKVYTPF----------RKALIQNLVQADLRSLPV 179 I ++F D +L PG +L + Y VYTPF R ++NL D Sbjct: 121 GIEVETFWDQLLQAPGQVLTLSKSPYTVYTPFWKNWSQLAKARPTTLENLQGLDKNE--- 177 Query: 180 PAIRLTGPVTPSNIPRFFDYPFQAIDPM-FPIGEQNALHILRKFCKEKVYYYVEQRDIPA 238 +LT + N+P + F +P+ GE+ A L +FC+ + Y E R+ PA Sbjct: 178 -GEKLTETI---NLPTLENLGFTWQNPLPLTPGEKAANSTLEEFCQGVINNYQEDRNFPA 233 Query: 239 IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIK-PKSGAFSWLNELIWREFYRHLMAF 297 + GTS+LS L G + R W E + + K +W EL WREFY+H + F Sbjct: 234 VDGTSRLSAALKFGTIGIRTIWTATLELLENCRAQEAKDSIITWQQELAWREFYQHCLYF 293 Query: 298 YPSVCMG---KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLR 354 +P + +G K F W + QAW QG TG+PI+DAAMRQLN GWMHNR R Sbjct: 294 FPELAVGAYRKEF----RHFPWQDNEEHFQAWCQGKTGYPIVDAAMRQLNETGWMHNRCR 349 Query: 355 MITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQ 414 MI ASFL KDL+++W+ GE+YFM +L DGDLA+NNGGWQW+AS+G D P RIFNP Q Sbjct: 350 MIVASFLTKDLIINWQKGEKYFMQKLFDGDLAANNGGWQWSASSGMDPKP-LRIFNPASQ 408 Query: 415 GKRFDPQGTFIRHWLPELNNVPTQY-IHAPHSWLDKNDLSLNYPLPIVDHKK 465 ++FDP+G +IR WLPEL +V T+Y + L+++ YP PIVDH + Sbjct: 409 TQKFDPEGEYIRQWLPELASVDTEYLVTGKIPRLERH--RCGYPEPIVDHNQ 458 >gi|209965317|ref|YP_002298232.1| deoxyribodipyrimidine photolyase family protein [Rhodospirillum centenum SW] gi|209958783|gb|ACI99419.1| deoxyribodipyrimidine photolyase family protein [Rhodospirillum centenum SW] Length = 489 Score = 280 bits (717), Expect = 3e-73, Method: Compositional matrix adjust. Identities = 180/489 (36%), Positives = 251/489 (51%), Gaps = 43/489 (8%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFI---ATPEQWRQHGISARQSHFIYASLLQ 67 LVW R DLR+ DN AL A S V+ VF+ TP WR G S +++ SL Sbjct: 7 LVWFRQDLRLADNPALSDAAR-SGRPVVPVFVLDDDTPGGWRPGGAS---RWWLHHSLAS 62 Query: 68 VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127 + +SL+ G + D +I + + +NR YE RD L+ L Sbjct: 63 LSRSLATAGSPLVLRR-GRADVAI---GELVRETGAGTVLWNRCYEPWATERDSRLKADL 118 Query: 128 QHR-VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 + V KSF+ S+L P ++ A + Y+V+TPF +A+ + + + P RL Sbjct: 119 RAAGVEVKSFNGSLLREPMTVRTAAGEPYRVFTPFWRAVSSSPDWPEPLAAP---DRLEA 175 Query: 187 PVT-PSN--------IPRFFDYPF---QAIDPMFPIGEQNALHILRKFCKEKVYYYVEQR 234 P T P++ +P D+ QA P GE LR F + Y E R Sbjct: 176 PPTAPASDPLESWGLLPTTPDWAGGLRQAWQP----GEAAVAARLRAFLEGAAADYAEGR 231 Query: 235 DIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKP---KSGAFSWLNELIWREFY 291 D P GTS+LSPYL G +SPRQ W ++ L P + A S+L EL WREF Sbjct: 232 DRPGSDGTSRLSPYLHFGEISPRQVWAATRDAM--LSGNPPEHRRHAESFLRELGWREFC 289 Query: 292 RHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHN 351 +L+ +P + +P P E W DS L +W++G TG+PI+DA MRQL T GWMHN Sbjct: 290 YNLLYHFPKLPE-RPLNPRFEDFPWQPDSAALDSWQRGRTGYPIVDAGMRQLWTTGWMHN 348 Query: 352 RLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNP 411 R+RMI SFLVK LL+ W+ G+ +F L+D DLA+N GWQW A G D+ PYFR+FNP Sbjct: 349 RVRMIVGSFLVKHLLLPWQEGQRWFWDTLVDADLANNAAGWQWIAGCGADAAPYFRVFNP 408 Query: 412 TIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKN------DLSLNYPLPIVDHKK 465 +QG +FDP G ++R W+PEL +P IH P + + L +YP P ++HK+ Sbjct: 409 VLQGGKFDPDGRYVRRWVPELAALPDTLIHQPWTATAETLRRAGIRLGTDYPAPCIEHKR 468 Query: 466 ACHHTLNQY 474 L + Sbjct: 469 GRDRALAAF 477 >gi|54296244|ref|YP_122613.1| hypothetical protein lpp0271 [Legionella pneumophila str. Paris] gi|53750029|emb|CAH11419.1| hypothetical protein lpp0271 [Legionella pneumophila str. Paris] Length = 471 Score = 280 bits (716), Expect = 3e-73, Method: Compositional matrix adjust. Identities = 177/489 (36%), Positives = 265/489 (54%), Gaps = 37/489 (7%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M++ LVW R DLR+TDN A AC + + VI ++I + + Q+ +++ SL+ Sbjct: 1 MTIALVWFRQDLRLTDNPAFIEACSHHEI-VIPLYIYDD---KCSVLGQAQAWWLHHSLI 56 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 + KSL+Q+G+ + D E + Q V +++NR YE + RDK ++ Sbjct: 57 ALGKSLNQQGLSLVLRK----GDPQEIILELVAQYGVESVYWNRCYEPQVIARDKKIKLA 112 Query: 127 LQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185 L R I +SF+ ++L P +I N +KV+TP+ K Q L ++P P + Sbjct: 113 LGEREIKVQSFNGNLLHEPWTIKNKNGDFFKVFTPYWKQCRQIL------NIPSPFMLTK 166 Query: 186 GP----VTPSNIPRFFDYPF----QAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIP 237 P +T ++ ++ P + GE+ A L +F + Y +RD P Sbjct: 167 RPRGIEITSDDLGKWKLLPAINWAARFSEYWTPGEEGAQKKLDEFIVHHLSGYKRERDFP 226 Query: 238 AIQGTSQLSPYLSIGVLSPRQCWNRLK----EEFVDLLIKPKSGAFSWLNELIWREFYRH 293 A TS+LSP+L G +SP L+ E+ DL + +L+EL WREF + Sbjct: 227 AKNATSRLSPHLHFGEISPWVILRALELAKLEQTCDL-----ASVEHFLSELGWREFSVY 281 Query: 294 LMAFYPSV-CMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNR 352 L+ +P + C + F + W D LL W++G TG+PIIDA MR+L G+MHNR Sbjct: 282 LLYHFPKLDC--ENFRKEFDAFPWQNDEQLLTCWQKGMTGYPIIDAGMRELWATGYMHNR 339 Query: 353 LRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPT 412 +RMI ASFL KDLL+DWR G ++F+ L+D DLA+N+ WQW A G D+ PYFRIFNP Sbjct: 340 VRMIVASFLTKDLLIDWRSGAQWFLDTLVDADLANNSASWQWVAGCGADAAPYFRIFNPV 399 Query: 413 IQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLN--YPLPIVDHKKACHHT 470 +Q ++FDP G +IR W+PEL + +Q IH P + D N + L YP PI+DH++A Sbjct: 400 LQSQKFDPDGIYIRQWIPELAQLNSQSIHQPWTDADANSIFLGKKYPKPIIDHQEARTKA 459 Query: 471 LNQYYAAKK 479 L+ Y KK Sbjct: 460 LSYYQQIKK 468 >gi|119484468|ref|ZP_01619085.1| deoxyribopyrimidine photolyase [Lyngbya sp. PCC 8106] gi|119457942|gb|EAW39065.1| deoxyribopyrimidine photolyase [Lyngbya sp. PCC 8106] Length = 479 Score = 280 bits (716), Expect = 4e-73, Method: Compositional matrix adjust. Identities = 172/485 (35%), Positives = 262/485 (54%), Gaps = 25/485 (5%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 L W R DLRI+D+K L AA S ++V+ VF P Q ++ + ++ L ++QK Sbjct: 6 LFWHRRDLRISDHKGLAAAREKS-SQVVGVFCLDPNILDQDDVAPARVTYMIGCLQELQK 64 Query: 71 SLSQKG---IVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127 + G ++ Q S + L++ + ++N E RD+ + + L Sbjct: 65 QYEKVGSQLLILQGQPSSAIPKLAKALEAKAV-------YWNLDVEPYAKDRDQQVSEAL 117 Query: 128 QH-RVICKSFDDSVLLPPGSI-LNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185 + + ++ D +L P I A + YKVYTP+ + Q + + LT Sbjct: 118 KEVNIGVETVWDQLLHTPDEIRTKSANEPYKVYTPYWNNWSKRKKQKPIHTFSENPTGLT 177 Query: 186 GP---VTPSN----IPRFFDYPFQAIDPM-FPIGEQNALHILRKFCKEKVYYYVEQRDIP 237 + N +P D F + + GE+ A + L +FC ++ Y EQR+ P Sbjct: 178 EKQLKIAKENGIIDLPLAEDLGFVWENELILEPGEEAAQNRLEEFCDRALFEYDEQRNFP 237 Query: 238 AIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLI-KPKSGAFSWLNELIWREFYRHLMA 296 A GTSQLS L GV+S R W + E + + ++ +W EL WREFY+ M Sbjct: 238 ANDGTSQLSAALKFGVISIRTVWAKTVEAMENTRSDEARNNIKAWQQELAWREFYQQAMY 297 Query: 297 FYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMI 356 +P + G P+ + W+++ QAW +G TG+PI+DAAMRQLN IGWMHNR RMI Sbjct: 298 HFPELANG-PYRDHFKDFPWSENQEHFQAWCEGKTGYPIVDAAMRQLNEIGWMHNRCRMI 356 Query: 357 TASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGK 416 A+FL KDL+++W+ GE+YFM +L+DGDL++NNGGWQW+AS+G D P RIFNPT Q + Sbjct: 357 VANFLTKDLMINWQWGEKYFMQKLMDGDLSANNGGWQWSASSGMDPKP-LRIFNPTTQAQ 415 Query: 417 RFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYA 476 ++DP+G +IR WLPEL+++ T+Y+ K+ + +YP PIVDHK+ + Y Sbjct: 416 KYDPEGEYIRQWLPELSSLDTEYL-VTGKISSKDREACDYPEPIVDHKQQQQQFKSLYKE 474 Query: 477 AKKQS 481 K+ S Sbjct: 475 QKEAS 479 >gi|220934567|ref|YP_002513466.1| Deoxyribodipyrimidine photo-lyase [Thioalkalivibrio sp. HL-EbGR7] gi|219995877|gb|ACL72479.1| Deoxyribodipyrimidine photo-lyase [Thioalkalivibrio sp. HL-EbGR7] Length = 483 Score = 280 bits (716), Expect = 4e-73, Method: Compositional matrix adjust. Identities = 175/490 (35%), Positives = 254/490 (51%), Gaps = 38/490 (7%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 L+W R DLR+TDN AL A D +VI V+I PE+ +++ SL + + Sbjct: 4 LLWFRRDLRLTDNPALARALE--DGEVIPVYIHAPEEEGDWAPGGASLWWLHHSLAALGE 61 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130 L +G+ Q + S+E L + + ++ +NR YE + RD ++++L+ + Sbjct: 62 DLRARGVDLVIRQGA----SLETLQALIRETGAQQVLWNRLYEPALIARDTGIKQQLRDQ 117 Query: 131 VI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV- 188 I +SF+ ++L P ++ YKV+TPF KA + V D+ P R+ GP Sbjct: 118 GIRTQSFNAALLFEPWTVAKQDGTPYKVFTPFWKACLGLGVPVDVTPAPE---RIQGPAQ 174 Query: 189 -----TPSNIPRFFDYPFQA-IDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGT 242 T ++ D + A ++ GE AL L +F E V Y E R+ P G+ Sbjct: 175 LPPGETLKSLGLLPDIDWAAGFTELWQPGEAGALARLAEFMDEAVADYDEMRNRPDRDGS 234 Query: 243 SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAF-------SWLNELIWREFYRHLM 295 S+LSPYL G + PRQ + + K + G S+L E+ WREF HL+ Sbjct: 235 SRLSPYLHFGEIGPRQAAAACQ------VAKDRHGGKAAHQGIDSFLREIGWREFAHHLL 288 Query: 296 AFYPSVCMGKPFIPWTEKIEWNK-DSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLR 354 +P +P P K+ W + D L+AW++G TG P++DAAMR L GWMHNR+R Sbjct: 289 YHFPRTS-DEPLDPRFRKLPWRELDEETLRAWQRGRTGIPLVDAAMRALWATGWMHNRVR 347 Query: 355 MITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQ 414 MI AS L K+L W G +F L+D DLA N GWQW A G D+ PYFR+FNP +Q Sbjct: 348 MIVASLLTKNLGAHWLTGARWFWDTLVDADLAGNTLGWQWTAGCGADAAPYFRVFNPVLQ 407 Query: 415 GKRFDPQGTFIRHWLPELNNVPTQYIH----APHSWLDKNDLSL--NYPLPIVDHKKACH 468 G+RFDP G ++R W+PEL +P +YIH AP + L + L NYP PIVD ++ Sbjct: 408 GERFDPNGDYLRQWVPELAKLPAKYIHRPWEAPEAILKAAGVRLGGNYPRPIVDLAESRR 467 Query: 469 HTLNQYYAAK 478 L + K Sbjct: 468 QALEMWEVIK 477 >gi|212639063|ref|YP_002315583.1| Deoxyribodipyrimidine photolyase [Anoxybacillus flavithermus WK1] gi|212560543|gb|ACJ33598.1| Deoxyribodipyrimidine photolyase [Anoxybacillus flavithermus WK1] Length = 468 Score = 280 bits (716), Expect = 4e-73, Method: Compositional matrix adjust. Identities = 169/468 (36%), Positives = 253/468 (54%), Gaps = 27/468 (5%) Query: 7 MSVHLVWLRNDLRITDNKALYAA---CHNSDAKVIAVFIATPEQWRQHGISARQSH--FI 61 M +VW R D R+ D+ AL A K++ F P + R H + Sbjct: 4 MHTAVVWFRRDFRLHDHTALVHALRWAKERQGKLLFFFHFDP-----YFAKERTYHHEYF 58 Query: 62 YASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDK 121 + ++ Q ++ L + + + DD L S + + +F+N+ RD+ Sbjct: 59 FQTVEQFRQMLRHLYGIHVHILHGDIDDVFVRLIS---RTHMNAIFFNKDEVGRGKERDE 115 Query: 122 LLEKRLQ-HRVICKSFDDSVLLPPGSILNHALQMYKVYTPF----RKALIQNLVQADLRS 176 + LQ + + ++DD+ L +L YKVYTP+ RK + + D+ Sbjct: 116 YVRTLLQKYGIDVYTYDDAHLHGAFEVLKADGTPYKVYTPYYRAWRKRPKRFPLSIDIDL 175 Query: 177 LPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDI 236 L +++T P++ + + Q EQ+ALH+L++F + YY QRDI Sbjct: 176 LRAHMLQIT-PLSEYDEHMLKMWLSQCTKRWERTSEQDALHVLQQFIDTSLPYYHRQRDI 234 Query: 237 PAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMA 296 PA+ GTS+LSP+L G LS R ++ + ++F + +++ EL WR+FY + A Sbjct: 235 PAVSGTSRLSPHLKTGTLSIRTVFHAVAQQFGNGY---DEAVETYIKELAWRDFYHMIYA 291 Query: 297 FYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMI 356 +P + FI + W++D +AWK+G TGFP++DA MRQL GWMHNRLRMI Sbjct: 292 HFP-FTKTEAFIEKYRHLPWSRDDERFEAWKEGKTGFPLVDAGMRQLKEEGWMHNRLRMI 350 Query: 357 TASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGK 416 ASFL KD L+DWR+GE+YF L+D D ASN GGWQWAAS G D+VPYFR+FNP Q K Sbjct: 351 AASFLTKDYLIDWRMGEQYFQHMLIDYDEASNIGGWQWAASVGTDAVPYFRVFNPIEQSK 410 Query: 417 RFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHK 464 +FDP GT+IR ++ EL + P+ YIH P W K+++ +YP P VDH+ Sbjct: 411 KFDPDGTYIRTYVQELASFPSLYIHEP--W--KSNIQTDYPAPTVDHQ 454 >gi|309780777|ref|ZP_07675518.1| deoxyribodipyrimidine photo-lyase (DNA photolyase)(Photoreactivating enzyme) [Ralstonia sp. 5_7_47FAA] gi|308920459|gb|EFP66115.1| deoxyribodipyrimidine photo-lyase (DNA photolyase)(Photoreactivating enzyme) [Ralstonia sp. 5_7_47FAA] Length = 518 Score = 280 bits (715), Expect = 5e-73, Method: Compositional matrix adjust. Identities = 183/500 (36%), Positives = 258/500 (51%), Gaps = 53/500 (10%) Query: 11 LVWLRNDLRITDNKAL-YAACHNSDAKVIAVFIATP-EQWRQHGI-SARQSHFIYASLLQ 67 LVW R DLR D+ AL YA H + + VF + G+ S R+ FI AS+ + Sbjct: 21 LVWFRRDLRHVDHAALHYALRHCREVYCVFVFDRDILDALLARGLKSDRRVEFIRASIEE 80 Query: 68 VQKSLSQKG---IVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLE 124 ++ +L + G IV H + Q V +F N E + RD+ + Sbjct: 81 LRGALRETGGDLIVVHDHPRHA-------IPEIARQLNVEAVFANHDEEPSAQARDEAVR 133 Query: 125 KRLQHRVICKSFD--DSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAI 182 K L + C FD D V+ ILN + Y V+TP++ A + L DLR+ P Sbjct: 134 KALAQQP-CAWFDFKDQVIFERDEILNGQGKPYGVFTPYKNAWLAALTPFDLRAYPTEPY 192 Query: 183 --RLTGPVTPSNIPRFFDYPFQAIDPM-----------FPIGEQNALHILRKFCKEKVYY 229 L P P +P A++ M P G +L +F +E++ Sbjct: 193 FGALAKP------PEALAHPTPALEAMGFARTNLSEIALPSGMSGGQTLLDEF-EERMDD 245 Query: 230 YVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWRE 289 Y +RD PA++G S LS +L G +S R R +++ GA +WL+EL+WR+ Sbjct: 246 YHARRDFPAVRGPSYLSTHLRFGTVSIRTLAARAHAS----MLRGSRGAATWLSELVWRD 301 Query: 290 FYRHLMAFYPSVCMGKPFIPWTEKIEW---NKDSHLLQAWKQGYTGFPIIDAAMRQLNTI 346 FY ++ P + G F P ++I W + +AWK TG+P++DAAM Q+ Sbjct: 302 FYFMILHHRPDLADGAAFHPEFDRIRWVDGDTGDARFEAWKAARTGYPLVDAAMLQIFQS 361 Query: 347 GWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYF 406 G+MHNRLRM+ ASFL+KDL +DWR GE+YF L D D ++NNGGWQWAAS+G D+ P+F Sbjct: 362 GYMHNRLRMVAASFLIKDLGIDWRRGEQYFADVLNDFDFSANNGGWQWAASSGCDAQPWF 421 Query: 407 RIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND--------LSLNYPL 458 RIFNP Q ++FDPQG FIR +LP+L +P +YIHAP W + L YPL Sbjct: 422 RIFNPVTQSEKFDPQGRFIRKYLPQLAKLPDKYIHAP--WTAPANVLKEASVVLGETYPL 479 Query: 459 PIVDHKKACHHTLNQYYAAK 478 PIVDH A TL++Y K Sbjct: 480 PIVDHAAARAATLDRYAVTK 499 >gi|54293218|ref|YP_125633.1| hypothetical protein lpl0266 [Legionella pneumophila str. Lens] gi|53753050|emb|CAH14497.1| hypothetical protein lpl0266 [Legionella pneumophila str. Lens] Length = 471 Score = 280 bits (715), Expect = 5e-73, Method: Compositional matrix adjust. Identities = 175/489 (35%), Positives = 267/489 (54%), Gaps = 37/489 (7%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M++ LVW R DLR+TDN A AC + + VI ++I + + Q+ +++ SL+ Sbjct: 1 MTIALVWFRQDLRLTDNPAFIEACSHHEI-VIPLYIYDD---KCSVLGQAQAWWLHHSLI 56 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 + KSL+Q+G+ + + + +E + Y V +++NR YE + RDK ++ Sbjct: 57 ALGKSLNQQGLCLVLRKGAPQEIILELVAQYG----VESVYWNRCYEPQAIARDKKIKLA 112 Query: 127 LQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185 L R I +SF+ ++L P +I N +KV+TP+ K Q L ++P P + Sbjct: 113 LGEREIKVQSFNGNLLHEPWTIKNKNGDFFKVFTPYWKQCRQIL------NIPSPFMLTK 166 Query: 186 GP----VTPSNIPRFFDYPF----QAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIP 237 P +T ++ ++ P + GE+ A L +F + Y +RD P Sbjct: 167 RPRGIKITSDDLGKWKLLPAINWAARFSEYWTPGEEGAQKKLDEFIVHHLSGYKRERDFP 226 Query: 238 AIQGTSQLSPYLSIGVLSPRQCWNRLK----EEFVDLLIKPKSGAFSWLNELIWREFYRH 293 A TS+LSP+L G +SP L+ E+ DL + +L+EL WREF + Sbjct: 227 AKNATSRLSPHLHFGEISPWVILRALELAKLEQTCDL-----ASVEHFLSELGWREFSVY 281 Query: 294 LMAFYPSV-CMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNR 352 L+ +P + C + F + W D LL W++G TG+PIIDA MR+L G+MHNR Sbjct: 282 LLYHFPKLDC--ENFRKEFDAFPWQNDEQLLTCWQKGMTGYPIIDAGMRELWATGYMHNR 339 Query: 353 LRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPT 412 +RMI ASFL KDLL+DWR G ++F+ L+D DLA+N+ WQW A G D+ PYFRIFNP Sbjct: 340 VRMIVASFLTKDLLIDWRSGAQWFLDTLVDADLANNSASWQWVAGCGADAAPYFRIFNPV 399 Query: 413 IQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLN--YPLPIVDHKKACHHT 470 +Q ++FDP G +IR W+PEL + +Q IH P + D + + L YP PI+DH++A Sbjct: 400 LQSQKFDPDGVYIRQWIPELAQLNSQSIHQPWTDADASSIFLGKKYPKPIIDHQEARTKA 459 Query: 471 LNQYYAAKK 479 L+ Y KK Sbjct: 460 LSYYQQIKK 468 >gi|166363455|ref|YP_001655728.1| DNA photolyase [Microcystis aeruginosa NIES-843] gi|166085828|dbj|BAG00536.1| DNA photolyase [Microcystis aeruginosa NIES-843] Length = 474 Score = 279 bits (714), Expect = 6e-73, Method: Compositional matrix adjust. Identities = 174/466 (37%), Positives = 248/466 (53%), Gaps = 24/466 (5%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 L W R DLR++DN L A S K+I VF P I+ + ++ L +++K Sbjct: 6 LFWHRRDLRLSDNIGLSKARERS-PKIIGVFCLDPAILEGDDIAPARVAYLLGCLEELEK 64 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130 + QKG + + + L + +F+N E +RD+ + LQ + Sbjct: 65 NYHQKGSQLLIIR----GNPSQTLVNLAGNLSAKAVFFNLDIEPYARQRDQQVIAALQTK 120 Query: 131 VI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPV-------PAI 182 I ++F D +L PG +L + Y VYTPF K Q L +A ++L Sbjct: 121 GIEVETFWDQLLHAPGQVLTLSKSPYTVYTPFWKNWSQ-LAKASPKTLENLQGLDENEGE 179 Query: 183 RLTGPVTPSNIPRFFDYPFQAIDPM-FPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQG 241 +LT + N+P + F +P+ GE+ A L +FC+ + Y E R+ PA G Sbjct: 180 KLTETI---NLPTLENLGFTWQNPLPLTPGEKAAHSRLEEFCQGVINNYQEDRNFPAFDG 236 Query: 242 TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIK-PKSGAFSWLNELIWREFYRHLMAFYPS 300 TS+LS L G + R W E + + K +W EL WREFY+H + F+P Sbjct: 237 TSRLSAALKFGAIGIRTIWTATLELLENCCAQEAKDSIITWQQELAWREFYQHCLYFFPE 296 Query: 301 VCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASF 360 + +G + W + QAW QG TG+PI+DAAMRQLN GWMHNR RMI ASF Sbjct: 297 LAVGA-YRKEFRHFPWQDNEEHFQAWCQGKTGYPIVDAAMRQLNETGWMHNRCRMIVASF 355 Query: 361 LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDP 420 L KDL+++W+ GE+YFM +L DGDLA+NNGGWQW+AS+G D P RIFNP Q ++FDP Sbjct: 356 LTKDLIINWQKGEKYFMQKLFDGDLAANNGGWQWSASSGMDPKP-LRIFNPASQTQKFDP 414 Query: 421 QGTFIRHWLPELNNVPTQY-IHAPHSWLDKNDLSLNYPLPIVDHKK 465 +G +IR WLPEL +V T+Y + L+++ YP PIVDH + Sbjct: 415 EGEYIRQWLPELASVDTEYLVTGKIPRLERH--RCGYPEPIVDHNQ 458 >gi|302664116|ref|XP_003023694.1| hypothetical protein TRV_02203 [Trichophyton verrucosum HKI 0517] gi|291187700|gb|EFE43076.1| hypothetical protein TRV_02203 [Trichophyton verrucosum HKI 0517] Length = 565 Score = 279 bits (714), Expect = 7e-73, Method: Compositional matrix adjust. Identities = 172/489 (35%), Positives = 243/489 (49%), Gaps = 45/489 (9%) Query: 13 WLRNDLRITDNKAL---YAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69 W + DLR+ DN++L Y+ + + +I ++I +PE H S + FI +L ++ Sbjct: 102 WFKQDLRLQDNRSLHRAYSFARDHNIPLICLYIFSPEDLTAHLCSPPRVDFILRTLATLK 161 Query: 70 KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH 129 LS+K I + C LF N +YE++E+RR+ L + Sbjct: 162 SELSKKDIPLYMESMERRKRIPIRIVELCKTWGANHLFANIEYEVDELRREAKLTRLCTT 221 Query: 130 RVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQ--ADLRSLPVPAIRLTG 186 + I + DD+ ++ PG + + Y VYTP+ ++ + L Q +L + PA+ Sbjct: 222 QGIRFDTEDDTCVVAPGELTTQQGKQYAVYTPWYRSWVAYLKQHPENLELVDAPAVNAGD 281 Query: 187 -------------PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQ 233 P+ P+ + + + + M+P GEQ A LR+F EK Y + Sbjct: 282 ARKHFEDLFDSAVPIAPNQM-KLSEAEQERFKKMYPEGEQEATRRLREFLSEKGKQYRSK 340 Query: 234 RDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRH 293 RD + Q TS LSPY S G LS R + L+I S + Sbjct: 341 RDFMSSQITSVLSPYFSCGALSARTAPFIEAMKLCGLVITDVSSS--------------- 385 Query: 294 LMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRL 353 M K F P +EW DS AW +G TGFPI+DAAMRQL WMHNR Sbjct: 386 ---------MNKCFKPEFTDLEWGYDSTQFDAWCEGKTGFPIVDAAMRQLKHCAWMHNRT 436 Query: 354 RMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTI 413 RMI +SFL KDLL+DWR GE++FM L+DGD ASN+GGW + +STG D PYFRIFNP Sbjct: 437 RMIVSSFLSKDLLIDWRRGEQFFMLHLIDGDFASNHGGWGFGSSTGVDPQPYFRIFNPLR 496 Query: 414 QGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLN-YPLPIVDHKKACHHTLN 472 Q +RFDP G +IRHW+PEL +V IH P+ + N YP PIV+H ++ L Sbjct: 497 QSERFDPDGDYIRHWVPELRDVEGSAIHDPYGRGAEEIAEKNGYPRPIVNHTESRERALE 556 Query: 473 QYYAAKKQS 481 +Y A S Sbjct: 557 KYKKAAHGS 565 >gi|163759469|ref|ZP_02166554.1| DNA photolyase [Hoeflea phototrophica DFL-43] gi|162283066|gb|EDQ33352.1| DNA photolyase [Hoeflea phototrophica DFL-43] Length = 484 Score = 279 bits (713), Expect = 8e-73, Method: Compositional matrix adjust. Identities = 167/488 (34%), Positives = 250/488 (51%), Gaps = 33/488 (6%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 +VW RNDLR+ DN AL AA S +V+ V+I P I + +++ SL ++ + Sbjct: 13 IVWFRNDLRVNDNAALLAAS--SHKQVVPVYILEPAA-NTRAIGGARKWWLHHSLAKLGE 69 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130 L+ G + D + + +++NR+Y+ + D L+ L+ + Sbjct: 70 KLADLGAPLMLMRG----DPALLIAGLVEKTDAAAVYWNRRYDPAFLSSDASLKDALRAQ 125 Query: 131 -VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189 ++ +SF +L P + YKVY+PF +A+ + D P P RLT Sbjct: 126 DIVVESFAGQLLHEPTRVRTGNDTFYKVYSPFWRAIEGGI--EDREPAPAPD-RLTALAN 182 Query: 190 PSNIPRFFDYPFQAIDP--------MFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQG 241 D+ P + GE A L +F E+V Y RD+P ++ Sbjct: 183 APQSETLSDWGLLPTKPDWARGLRETWKPGEDGAHERLDEFVSERVCGYASLRDVPGVES 242 Query: 242 TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSV 301 TS+LSP+L+ G ++P Q LK D K ++ + E+ WREF HL+ P + Sbjct: 243 TSRLSPHLANGEITPAQIIQALKASDADASPKDRT---VFRKEVGWREFSYHLLVNEPDL 299 Query: 302 CMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFL 361 + + W D L AW++G TG+PI+DA MR+L GWMHNR+RM+TASFL Sbjct: 300 PQ-QNHNSRFDGFPWKDDETALLAWQKGVTGYPIVDAGMRELWRTGWMHNRVRMVTASFL 358 Query: 362 VKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQ 421 K L+VDWR GE +F L+D D ASN WQW A +G D+ PYFR+FNP IQG++FDP Sbjct: 359 TKHLMVDWREGERWFWDTLVDADPASNAASWQWVAGSGADAAPYFRVFNPIIQGEKFDPD 418 Query: 422 GTFIRHWLPELNNVPTQYIHAPHSWLDKND--------LSLNYPLPIVDHKKACHHTLNQ 473 G ++R ++PEL N+P+++IH P W +D L YP+PIVDH++A + L Sbjct: 419 GDYVRRYVPELANLPSKFIHKP--WTAPDDALAKAGVHLGETYPMPIVDHQQARNRALAA 476 Query: 474 YYAAKKQS 481 Y K + Sbjct: 477 YEKIKDAA 484 >gi|289580258|ref|YP_003478724.1| deoxyribodipyrimidine photo-lyase [Natrialba magadii ATCC 43099] gi|289529811|gb|ADD04162.1| Deoxyribodipyrimidine photo-lyase [Natrialba magadii ATCC 43099] Length = 468 Score = 278 bits (712), Expect = 1e-72, Method: Compositional matrix adjust. Identities = 176/487 (36%), Positives = 243/487 (49%), Gaps = 37/487 (7%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 MSVH+ W R DLR TDN +L AA VI FI P S + F+ SL Sbjct: 1 MSVHVHWHRRDLRATDNHSLSAAAET--GSVIPAFIFDPAVL--EFASPPRVAFMLESLS 56 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 +++ ++G D E L + ++ +NR Y +RD+ + + Sbjct: 57 ELRAWYRERGGDL----VVATGDPREELPRIAREHGAERVSWNRDYSGLASKRDEEVREA 112 Query: 127 LQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPA---- 181 L I S DD++L PGSI + Y VY+ F K ++ PV A Sbjct: 113 LTDAGIEATSVDDALLFEPGSITTQQGETYAVYSYFWKKWRDREKES-----PVSAPDGE 167 Query: 182 --IRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAI 239 ++G PS FD P I G + A L FC + +Y Y +QRD PA Sbjct: 168 QLASVSGDSLPSQEALGFDDPEATIPDA---GMEAARRRLETFCADPIYRYADQRDDPAA 224 Query: 240 QGTSQLSPYL---SIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMA 296 TS LSP+L +IG+ + + +R K E D F ++L WR FY H++ Sbjct: 225 DATSGLSPHLKWGTIGIRTVYEALDRAKSEAPDEAAADSCEEFE--SQLAWRAFYAHVLD 282 Query: 297 FYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMI 356 P + + I+W D+ LQAWK G TG+PI+DA MRQL +MHNRLRMI Sbjct: 283 TNPHTVTAN-YRSYENPIQWQTDAAALQAWKDGKTGYPIVDAGMRQLRAEAFMHNRLRMI 341 Query: 357 TASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGK 416 ASFL KDL++DWR G +F +L D D AS+ GGWQWA+ TG D+ PYFRIFNP QG+ Sbjct: 342 VASFLTKDLMLDWREGYAWFREKLADHDTASDVGGWQWASGTGTDAQPYFRIFNPMTQGE 401 Query: 417 RFDPQGTFIRHWLPELNNVPTQYIHAPHSWL-----DKNDLSLNYPLPIVDHKKACHHTL 471 R DP +IR ++PEL +VP + I H W+ ++ ++ YP PIVDH L Sbjct: 402 RHDPDAEYIRTYVPELADVPAETI---HEWVALEPDERASVAPEYPDPIVDHAARREAAL 458 Query: 472 NQYYAAK 478 + + AA+ Sbjct: 459 DMFEAAR 465 >gi|94988861|ref|YP_596962.1| deoxyribodipyrimidine photolyase [Streptococcus pyogenes MGAS9429] gi|94992751|ref|YP_600850.1| deoxyribodipyrimidine photolyase [Streptococcus pyogenes MGAS2096] gi|94542369|gb|ABF32418.1| deoxyribodipyrimidine photolyase [Streptococcus pyogenes MGAS9429] gi|94546259|gb|ABF36306.1| Deoxyribodipyrimidine photolyase [Streptococcus pyogenes MGAS2096] Length = 480 Score = 278 bits (712), Expect = 1e-72, Method: Compositional matrix adjust. Identities = 182/495 (36%), Positives = 264/495 (53%), Gaps = 46/495 (9%) Query: 6 AMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASL 65 ++ V ++W R DLRI D KAL A S + + VF EQ S QS FI S+ Sbjct: 10 SVMVSVMWFRRDLRIDDQKALAHAI-ASQSPTLCVFQFNKEQLNLLH-SRNQSSFI-TSV 66 Query: 66 LQVQKSLSQKGIVFQYHQCSNFDDSIEWLD-SYCLQQRVTKL-------FYNRQYEINEV 117 L +K L +C D + + D C +Q +T+L F + + Sbjct: 67 LAFRKLL----------KCEGIDLYLMYGDLMTCFEQLLTQLKDWTDVYFNYDESGYGRL 116 Query: 118 RRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSL 177 R K + ++ + ++ D L I+N + Q YKV+TP+ + + QN + + Sbjct: 117 RDQKAAQFFKKNGIAVHTYQDHYLHGSQEIINQSGQPYKVFTPYYR-IWQNYPKETPIKV 175 Query: 178 PVPAIRLTGPVTPSNIPR----FFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQ 233 + R TP ++ R F D +Q + +Q L +F ++++ Y Sbjct: 176 ELSQGRWLNLETPDDVLRTVESFKDEKYQDVATFDEASKQ-----LNRFIQDQLAAYHAN 230 Query: 234 RDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKS-GAFSWLNELIWREFYR 292 RD PA GTS+LSP+L IG + R ++ +++ P S G ++L EL WR+FY Sbjct: 231 RDFPAQLGTSRLSPFLRIGAIGIRTVYHAVRQ-------APNSLGQATFLKELAWRDFYN 283 Query: 293 HLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNR 352 + YP +P +IEW + Q WK+G TG+PI+DAAM QL GWMHNR Sbjct: 284 MVYVAYPDQ-KTQPIQKAFSQIEWVNNPDWFQLWKEGKTGYPIVDAAMLQLQKTGWMHNR 342 Query: 353 LRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPT 412 LRMI ASFL KDLL DWR+GE++F QL+D D ASN GGWQWAASTG D+VPYFR+FNP Sbjct: 343 LRMIVASFLTKDLLCDWRLGEQHFQQQLIDYDAASNIGGWQWAASTGTDAVPYFRVFNPV 402 Query: 413 IQGKRFDPQGTFIRHWLPELNNVPTQYIHAP---HSWLDKND---LSLNYPLPIVDHKKA 466 Q KRFDP+G FI+ +LP+L +VP +Y+H P +L ++ + +YP PIVDH K Sbjct: 403 TQSKRFDPKGEFIKAYLPQLEHVPEKYLHEPWKMPKYLQESVSCIIGTDYPQPIVDHAKQ 462 Query: 467 CHHTLNQYYAAKKQS 481 + +Y AK+++ Sbjct: 463 REQAIAKYEWAKEKA 477 >gi|291570180|dbj|BAI92452.1| deoxyribopyrimidine photolyase [Arthrospira platensis NIES-39] Length = 474 Score = 278 bits (712), Expect = 1e-72, Method: Compositional matrix adjust. Identities = 174/472 (36%), Positives = 248/472 (52%), Gaps = 34/472 (7%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 L W R DLRI+DN L AA ++V+ VF PE I+ + ++ L +Q+ Sbjct: 6 LFWHRRDLRISDNWGL-AAARRVTSQVVGVFCLDPEILSGDDIAPVRVAYMLGCLQCLQE 64 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130 + G Q D+ + L + +++N+ E +RD+ +E+ L Sbjct: 65 DYQRGGSQLLIIQ----DNPAQGLRKLAVALGAIAVYWNQDVEPLPRQRDRSVEESLTEV 120 Query: 131 VI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQN--------LVQADLRSLPVPA 181 I ++F D VL P +I + + YKVYTP+ + IQ L L A Sbjct: 121 GIKVETFWDQVLHSPEAIFTGSKEPYKVYTPYWRKWIQQPKPEPCQRLKSTGLTEAQEKA 180 Query: 182 IRLTGPVTPSNIPRFFDYPFQAIDP-MFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ 240 G + +P D F +P + GE A L FC +Y Y E R+ PAI Sbjct: 181 ALEAGAIA---LPTAKDLGFIWSEPFILEPGETAASDRLEIFCDRAIYEYDEGRNFPAID 237 Query: 241 GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAF---SWLNELIWREFYRHLMAF 297 GTS LSP L G + R W + +E + L + +W EL WREFY+ + Sbjct: 238 GTSVLSPALRFGAIGIRTLWQKTQE--IIALTRSDEARHHIQTWQQELAWREFYQQALYH 295 Query: 298 YPSVCMG---KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLR 354 +P++ +G +PF ++ W+ + QAW QG TG+PI+DAAMRQLN GWMHNR R Sbjct: 296 FPALAIGAFRQPF----DRFPWSDNQEHFQAWCQGRTGYPIVDAAMRQLNQTGWMHNRCR 351 Query: 355 MITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQ 414 MI ASFL KDL+++W+ GE+YFM L+DGDLASNNGGWQW++S+G D P RIFNP Q Sbjct: 352 MIVASFLTKDLIINWQWGEKYFMQTLIDGDLASNNGGWQWSSSSGMDPKP-LRIFNPASQ 410 Query: 415 GKRFDPQGTFIRHWLPELNNVPTQY-IHAPHSWLDKNDLSLNYPLPIVDHKK 465 +++DP+ +IR WLPEL N+ T + + S D+ + YP PIVDH + Sbjct: 411 TQKYDPEAEYIRQWLPELRNLDTAHLVTGKISSGDRQ--ACGYPQPIVDHNR 460 >gi|139473471|ref|YP_001128187.1| deoxyribodipyrimidine photolyase [Streptococcus pyogenes str. Manfredo] gi|134271718|emb|CAM29951.1| putative deoxyribodipyrimidine photolyase [Streptococcus pyogenes str. Manfredo] Length = 469 Score = 278 bits (712), Expect = 1e-72, Method: Compositional matrix adjust. Identities = 183/492 (37%), Positives = 261/492 (53%), Gaps = 46/492 (9%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 V ++W R DLRI D KAL A S + + VF EQ S QS FI S+L Sbjct: 2 VSVMWFRRDLRIDDQKALAHAI-ASQSPTLCVFQFNKEQLNLLH-SRNQSSFI-TSVLAF 58 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLD-SYCLQQRVTKL-------FYNRQYEINEVRRD 120 +K L +C D + + D C +Q +T+L F + +R Sbjct: 59 RKLL----------KCEGIDLYLMYGDLMTCFEQLLTQLKDWTDVYFNYDESGYGRLRDQ 108 Query: 121 KLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVP 180 K + ++ + ++ D L I+N + Q YKV+TP+ + + QN + + + Sbjct: 109 KAAQFFKKNGIAVHTYQDHYLHGSQEIINQSGQPYKVFTPYYR-IWQNYPKETPIKVELS 167 Query: 181 AIRLTGPVTPSNIPRFF----DYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDI 236 R TP ++ R D +Q + +Q L +F ++++ Y RD Sbjct: 168 QGRWLNLETPDDVLRTVESIKDEKYQDVATFDEASKQ-----LNRFIQDQLAAYHANRDF 222 Query: 237 PAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKS-GAFSWLNELIWREFYRHLM 295 PA GTS+LSP+L IG + R ++ +++ P S G ++L EL WR+FY + Sbjct: 223 PAQLGTSRLSPFLRIGAIGIRTVYHAVRQ-------APNSLGQATFLKELAWRDFYNMVY 275 Query: 296 AFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRM 355 YP +P +IEW + Q WK+G TG+PI+DAAM QL GWMHNRLRM Sbjct: 276 VAYPDQ-KTQPIQKAFSQIEWVNNPDWFQLWKEGKTGYPIVDAAMLQLQKTGWMHNRLRM 334 Query: 356 ITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQG 415 I ASFL KDLL DWR+GE+YF QL+D D ASN GGWQWAASTG D+VPYFRIFNP Q Sbjct: 335 IVASFLTKDLLCDWRLGEQYFQQQLIDYDAASNIGGWQWAASTGTDAVPYFRIFNPVTQS 394 Query: 416 KRFDPQGTFIRHWLPELNNVPTQYIHAP---HSWLDKND---LSLNYPLPIVDHKKACHH 469 KRFDP+G FI+ +LP+L +VP +Y+H P +L ++ + +YP PIVDH K Sbjct: 395 KRFDPKGEFIKAYLPQLEHVPEKYLHEPWKMPKYLQESVSCIIGTDYPQPIVDHAKQREQ 454 Query: 470 TLNQYYAAKKQS 481 + +Y AK+++ Sbjct: 455 AIAKYEWAKEKA 466 >gi|209525318|ref|ZP_03273859.1| Deoxyribodipyrimidine photo-lyase [Arthrospira maxima CS-328] gi|209494169|gb|EDZ94483.1| Deoxyribodipyrimidine photo-lyase [Arthrospira maxima CS-328] Length = 474 Score = 278 bits (710), Expect = 2e-72, Method: Compositional matrix adjust. Identities = 171/470 (36%), Positives = 249/470 (52%), Gaps = 30/470 (6%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 L W R DLRI+DN L AA ++V+ VF P I+ + ++ L +Q+ Sbjct: 6 LFWHRRDLRISDNWGL-AAARRVTSQVVGVFCLDPAILSGDDIAPVRVAYMIGCLQCLQR 64 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130 + G Q D+ + L + +++N+ E +RD+ +E+ L Sbjct: 65 DYQRGGSQLLIIQ----DNPAQGLRKLAVALGAIAVYWNQDVEPLPRQRDRSVEESLTEV 120 Query: 131 VI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQ--------NLVQADLRSLPVPA 181 I ++F D VL P +I + + YKVYTP+ + IQ L L A Sbjct: 121 GIKVETFWDQVLHSPEAIFTGSKEPYKVYTPYWRKWIQQPKPEPCDTLKSRGLTEAQEKA 180 Query: 182 IRLTGPVTPSNIPRFFDYPFQAIDP-MFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ 240 R G + +P D F +P + GE A L+ FC +Y Y + R+ PAI Sbjct: 181 AREAGAIA---LPTAKDLGFIWSEPFILEPGETAASDRLQLFCDRAIYEYDQGRNFPAID 237 Query: 241 GTSQLSPYLSIGVLSPRQCWNRLKEEF-VDLLIKPKSGAFSWLNELIWREFYRHLMAFYP 299 GTS LSP L G + R W + +E + + + +W E+ WREFY+ + +P Sbjct: 238 GTSLLSPALRFGAIGIRTLWQKTQEIMALTRSDEARDHIQTWQQEIAWREFYQQALYHFP 297 Query: 300 SVCMG---KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMI 356 ++ G +PF ++ W+ + QAW QG TG+PI+DAAMRQLN GWMHNR RMI Sbjct: 298 ALATGAFRQPF----DRFPWSDNQEHFQAWCQGRTGYPIVDAAMRQLNETGWMHNRCRMI 353 Query: 357 TASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGK 416 ASFL KDL+++W+ GE+YFM +L+DGDLASNNGGWQW++S+G D P RIFNP Q + Sbjct: 354 VASFLTKDLIINWQWGEKYFMQRLIDGDLASNNGGWQWSSSSGMDPKP-LRIFNPASQAQ 412 Query: 417 RFDPQGTFIRHWLPELNNVPTQY-IHAPHSWLDKNDLSLNYPLPIVDHKK 465 ++DP+ +IR WLPEL N+ T + + S D+ + YP PIVDH + Sbjct: 413 KYDPEAEYIRQWLPELRNLETAHLVTGKISSSDRQ--ACGYPQPIVDHNQ 460 >gi|300023724|ref|YP_003756335.1| DNA photolyase FAD-binding protein [Hyphomicrobium denitrificans ATCC 51888] gi|299525545|gb|ADJ24014.1| DNA photolyase FAD-binding protein [Hyphomicrobium denitrificans ATCC 51888] Length = 482 Score = 278 bits (710), Expect = 2e-72, Method: Compositional matrix adjust. Identities = 171/484 (35%), Positives = 255/484 (52%), Gaps = 35/484 (7%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFI---ATPEQWRQHGISARQSHFIYASLLQ 67 ++W RNDLR+ D+ AL AA H + A ++ ++I A+P+QW+ G S ++ SL Sbjct: 7 VLWFRNDLRLGDHAALVAAVH-TGAPILPLYILDDASPKQWKMGGAS---HWWLDKSLAA 62 Query: 68 VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127 + L+ +G + DS L + +++ R YE V ++ L+ +L Sbjct: 63 LAGDLASRGGPLVLRRG----DSETELLRMIEETGAAAVYFTRSYEPWAVALEQRLKTKL 118 Query: 128 QH-RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 V C+ F +L P + YKVYTPF +A++++LV A +S+ P T Sbjct: 119 DDANVACRRFGGRLLREPEDMRTSNGGFYKVYTPFSRAIMKDLVPA--KSVRAPERIATL 176 Query: 187 PVTPSNIPRFFDYPFQAIDP--------MFPIGEQNALHILRKFCKEKVYYYVEQRDIPA 238 P + R D+ P + GE A L F + + Y R+ PA Sbjct: 177 EKQPKS-ERLRDWALHPQKPDWSKGFAAAWQPGEAGARKRLSDFVRTALKSYARDRNCPA 235 Query: 239 IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFY 298 GTS+LSP+L+ G +SP C + A ++L EL+WREF L+ + Sbjct: 236 TPGTSRLSPHLAFGEISPAAC-WHAAAHAGGKTNGSDNAAETFLKELLWREFSAGLLFHF 294 Query: 299 PSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITA 358 P + +PF P W+ ++ L+AW+ G TG+PI+DA MR+L G+MHNR+RMITA Sbjct: 295 PELPE-EPFRPEFSAFPWHGNAKHLKAWQTGQTGYPIVDAGMRELWATGYMHNRVRMITA 353 Query: 359 SFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRF 418 SFL+K LL+ W+ GE +F L+D DLA+N+ WQW A +G D+ PYFRIFNP +QG++F Sbjct: 354 SFLIKHLLIPWQTGEAWFWDTLVDADLANNSANWQWVAGSGADAAPYFRIFNPVLQGEKF 413 Query: 419 DPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND--------LSLNYPLPIVDHKKACHHT 470 DP G ++R W+PEL +P Q IHAP W + L +YP PIV+H +A Sbjct: 414 DPDGDYVRRWVPELAKLPRQIIHAP--WKADSGTLMEAGVKLGKSYPNPIVEHGEARARA 471 Query: 471 LNQY 474 L Y Sbjct: 472 LAGY 475 >gi|171913802|ref|ZP_02929272.1| Deoxyribodipyrimidine photo-lyase [Verrucomicrobium spinosum DSM 4136] Length = 475 Score = 278 bits (710), Expect = 2e-72, Method: Compositional matrix adjust. Identities = 175/492 (35%), Positives = 261/492 (53%), Gaps = 35/492 (7%) Query: 5 TAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYAS 64 T V L W R DLR+TDN AL+AA + +VI ++ + + + HF+ + Sbjct: 3 TKTPVSLHWFRRDLRLTDNTALHAA-QTASTQVIPFYVLSSWKKAHAWTGPNRQHFLCGN 61 Query: 65 LLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQ----YEINEVRRD 120 L + K+L G +++ ++ + T L+ NR + E Sbjct: 62 LESLAKNLEAIGSRLIIRS----GETVSEIERLIRETGATALYTNRDPDPYGQTIETHVI 117 Query: 121 KLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVP 180 L K CK D+VL P +L Y+V+TP+ K + +L +A P+ Sbjct: 118 ALCNKLGVAFHTCK---DAVLHQPQEVLTGNGGPYRVFTPYSKNWL-SLPKAQ----PLS 169 Query: 181 AIRLTGPVTPSNIPRFFDYPFQAI------DPMFPI---GEQNALHILRKFCKE-KVYYY 230 +R G PS P+ P + +P + GE+ A ++ F ++ Y Sbjct: 170 KVRTLGDA-PS--PKIKSLPLPTVVHWHLPEPTATLPTPGEKAARDRMKTFVDSVRLPRY 226 Query: 231 VEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKP--KSGAFSWLNELIWR 288 E R+ P++ GTSQLSP L G++S R+ ++R ++ +P +SG +++ EL WR Sbjct: 227 EETRNFPSVPGTSQLSPDLRYGLISIRELYHRCQQALAQAGGQPAAQSGINTYIKELAWR 286 Query: 289 EFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGW 348 EFY ++ FYP V + F P + W++D L AWK+G TGFP++DA MRQL GW Sbjct: 287 EFYMAVLHFYPEV-LETDFNPDLRGVSWHQDPAGLAAWKEGRTGFPLVDAGMRQLLATGW 345 Query: 349 MHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRI 408 MHNR+RMI + FL KDL V W GE +FM L+DG++ASNNGGWQW+A TG D+ P+FRI Sbjct: 346 MHNRVRMIVSMFLTKDLHVHWMEGESHFMQLLVDGEIASNNGGWQWSAGTGADAAPWFRI 405 Query: 409 FNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACH 468 NP Q KR+DP+G +I+ W+PEL +VP + AP + + L+ YPLPIVDH Sbjct: 406 QNPWTQTKRYDPEGKYIKTWVPELKDVPAEMFFAPPT--NGLPLAKGYPLPIVDHATERD 463 Query: 469 HTLNQYYAAKKQ 480 TL ++ A K+ Sbjct: 464 RTLQRFKVATKR 475 >gi|121606238|ref|YP_983567.1| deoxyribodipyrimidine photo-lyase [Polaromonas naphthalenivorans CJ2] gi|120595207|gb|ABM38646.1| deoxyribodipyrimidine photo-lyase type I [Polaromonas naphthalenivorans CJ2] Length = 477 Score = 277 bits (709), Expect = 2e-72, Method: Compositional matrix adjust. Identities = 176/492 (35%), Positives = 258/492 (52%), Gaps = 40/492 (8%) Query: 12 VWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQKS 71 +W R DLR+ DN AL+ A + + +V F+ + R+ FI SL+ + + Sbjct: 1 MWFRRDLRLQDNAALHHALKSCE-QVFCAFVFDRAILDSLPKADRRVEFIRESLVDLNRQ 59 Query: 72 LSQ----KGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127 L++ G++ ++ +++ L + + V +F N E + RD ++ L Sbjct: 60 LAKLALPAGLLIRHGT------ALDALPALASRLSVDAVFANHDDEPCSLARDAEVQGLL 113 Query: 128 Q-HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 + V +F D V+ +L A Q Y V+TP++KA ++ + L+ PV Sbjct: 114 ECAGVAFHTFKDHVIFERQEVLTLAGQPYTVFTPYKKAWLKKVDAFYLQPYPVEKYASAL 173 Query: 187 PVTPSN----IPRFFDYPFQAIDPM---FPIGEQNALHILRKFCKEKVYYYVEQRDIPAI 239 P++ +P + F+ + P G Q A + F +++ +Y + RD PA+ Sbjct: 174 AARPADERQDVPALAELGFEKTNLSALRLPTGSQGAEALFDDFL-DRMPHYADTRDFPAV 232 Query: 240 QGTSQLSPYLSIGVLSPRQ-CWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFY 298 +G S L +L G +S R+ N L ++ GA +WL+ELIWR+FY ++A + Sbjct: 233 KGPSYLGVHLRFGTISIRKITLNALAQQQTG-----SEGAATWLSELIWRDFYAQILANF 287 Query: 299 PSVCMGKPFIPWTEKIEWN---KDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRM 355 P F P + I W K L QAW +G TG+P++DAAM QLN G+MHNRLRM Sbjct: 288 PHAA-SSAFKPGYDAIAWEQGEKAELLFQAWCEGRTGYPLVDAAMAQLNQTGYMHNRLRM 346 Query: 356 ITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQG 415 +TASFLVKDL +DWR GE YF +L D DLASNNGGWQWAASTG D+ PYFRIFNP Q Sbjct: 347 VTASFLVKDLGIDWRWGERYFAEKLNDFDLASNNGGWQWAASTGCDAQPYFRIFNPVSQS 406 Query: 416 KRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKN--------DLSLNYPLPIVDHKKAC 467 ++FD G FIR +LP L +P +H+P WL L NY P+V H +A Sbjct: 407 EKFDADGKFIRKYLPVLAKLPKAALHSP--WLASPMERAAASVALGSNYARPVVAHAEAR 464 Query: 468 HHTLNQYYAAKK 479 TL +Y KK Sbjct: 465 ALTLQRYALVKK 476 >gi|52840467|ref|YP_094266.1| deoxyribodipyrimidine photolyase [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] gi|52627578|gb|AAU26319.1| deoxyribodipyrimidine photolyase [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] Length = 471 Score = 277 bits (708), Expect = 3e-72, Method: Compositional matrix adjust. Identities = 178/489 (36%), Positives = 264/489 (53%), Gaps = 37/489 (7%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M++ LVW R DLR+TDN A AC + + VI ++I + + Q+ +++ SL+ Sbjct: 1 MTIALVWFRQDLRLTDNPAFIEACSHHEI-VIPLYIYDD---KCSVLGQAQAWWLHYSLI 56 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 + KSL+Q+G+ + S + +E + Y V +++NR YE + RDK ++ Sbjct: 57 ALGKSLNQQGLSLVLRKGSPQEIILELVAQYG----VESVYWNRCYEPQVIARDKKIKLA 112 Query: 127 LQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185 L R I +SF+ ++L P +I N +KV+TP+ K Q L ++P P I Sbjct: 113 LVEREIKVQSFNGNLLHEPWTIKNKNGDFFKVFTPYWKQCRQIL------NIPSPFILTK 166 Query: 186 GP----VTPSNIPRFFDYPFQAIDPMFPI----GEQNALHILRKFCKEKVYYYVEQRDIP 237 P + +I ++ P F GE+ A L +F + Y RD P Sbjct: 167 RPRGIEIASDDIGKWKLLPAINWAARFSEYWIPGEEGAQKKLDEFIVHHLSGYKRDRDFP 226 Query: 238 AIQGTSQLSPYLSIGVLSPRQCWNRLK----EEFVDLLIKPKSGAFSWLNELIWREFYRH 293 A TS+LSP+L G +SP L+ E DL + +L+EL WREF + Sbjct: 227 AKNATSRLSPHLHFGEISPWVILRALELAKLEHTCDL-----ASVEHFLSELGWREFSVY 281 Query: 294 LMAFYPSV-CMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNR 352 L+ +P + C + F + W D LL W++G TG+PIIDA MR+L G+MHNR Sbjct: 282 LLYHFPKLDC--ENFRKEFDAFPWQNDEQLLTCWQKGMTGYPIIDAGMRELWATGYMHNR 339 Query: 353 LRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPT 412 +RMI ASFL KDLL+DWR G ++F+ L+D DLA+N+ WQW A G D+ PYFRIFNP Sbjct: 340 VRMIVASFLTKDLLIDWRSGAQWFLDTLVDADLANNSASWQWVAGCGADAAPYFRIFNPI 399 Query: 413 IQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLN--YPLPIVDHKKACHHT 470 +Q ++FDP G +IR W+PEL + +Q IH P + D + + L YP PI+DH++A Sbjct: 400 LQSQKFDPDGVYIRQWIPELAQLNSQSIHQPWTDADASSIFLGKKYPKPIIDHQEARTKA 459 Query: 471 LNQYYAAKK 479 L+ Y KK Sbjct: 460 LSYYQQIKK 468 >gi|194290487|ref|YP_002006394.1| deoxyribodipyrimidine photolyase (photoreactivation), fad-binding [Cupriavidus taiwanensis LMG 19424] gi|193224322|emb|CAQ70333.1| deoxyribodipyrimidine photolyase (photoreactivation), FAD-binding [Cupriavidus taiwanensis LMG 19424] Length = 519 Score = 277 bits (708), Expect = 3e-72, Method: Compositional matrix adjust. Identities = 187/493 (37%), Positives = 262/493 (53%), Gaps = 34/493 (6%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATP---EQWRQHGISA-RQSHFIYASLL 66 LVW R DLR TD+ AL+ A + A+V VF+ E G+ A R+ FI SL+ Sbjct: 24 LVWFRRDLRATDHAALHYALRHC-AQVWCVFVFDRDILEPLLARGLQADRRIEFIRQSLV 82 Query: 67 QVQKSLSQKG---IVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLL 123 ++ +L+ G IV + LD+ +F N YE RD+ + Sbjct: 83 ELAGTLAAAGGGLIVLHDRAQTAIPALARALDA-------EAVFANHDYEPAANARDEAV 135 Query: 124 EKRLQHRVICK-SFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPV-PA 181 + L + +F D + ILN + + V+TP++ A ++ DLR PV P Sbjct: 136 RQALAAQACALFTFKDQAIFERDEILNGQGKPFSVFTPYKNAWLRAAEPFDLRPYPVEPY 195 Query: 182 IRLTGPVTPS---NIPRFFDYPFQA---IDPMFPIGEQNALHILRKFCKEKVYYYVEQRD 235 + PV + +P F+A + P G A + +F ++ Y +RD Sbjct: 196 LPALAPVPAAYRLPVPTIAQLGFRASNLAEIAMPTGASGAQALFEEFTG-RMGDYGRRRD 254 Query: 236 IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLM 295 PA++G S LS +L G +S R R+ E + +GA WL+ELIWR+FY ++ Sbjct: 255 YPALRGPSYLSVHLRFGTISIRTL-ARVAHEAMLRGGADSAGAAVWLSELIWRDFYFMIL 313 Query: 296 AFYPSVCMGKPFIPWTEKIEW---NKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNR 352 +P V G F P + I W + AW+ TG+P+IDAAM Q+ G+MHNR Sbjct: 314 HHHPRVAAGAAFHPAYDAIRWQDGDTGERYFHAWRDAATGYPLIDAAMLQIRQSGYMHNR 373 Query: 353 LRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPT 412 LRM+TASFLVKDL VDWR GE+YF QL D DLA+NNGGWQWAASTG D+ P+FRIFNP Sbjct: 374 LRMVTASFLVKDLGVDWRRGEQYFADQLNDFDLAANNGGWQWAASTGCDAQPWFRIFNPV 433 Query: 413 IQGKRFDPQGTFIRHWLPELNNVPTQYIH----APHSWLDKNDLSL--NYPLPIVDHKKA 466 Q ++FDPQG FIR +LP+L +P +Y+H AP + L + + L NYP P+V H A Sbjct: 434 TQSQKFDPQGRFIRKYLPQLAALPDKYLHAPWTAPEAVLAEAGVRLGDNYPRPLVQHDVA 493 Query: 467 CHHTLNQYYAAKK 479 TL +Y A K+ Sbjct: 494 RQQTLRRYEAVKQ 506 >gi|149926765|ref|ZP_01915025.1| Deoxyribodipyrimidine photolyase [Limnobacter sp. MED105] gi|149824694|gb|EDM83910.1| Deoxyribodipyrimidine photolyase [Limnobacter sp. MED105] Length = 500 Score = 277 bits (708), Expect = 3e-72, Method: Compositional matrix adjust. Identities = 180/493 (36%), Positives = 250/493 (50%), Gaps = 38/493 (7%) Query: 8 SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFI-------ATPEQWRQHGISARQSHF 60 S L+W R DLR DN AL+ A + + +V VF+ A P + + R+ F Sbjct: 21 SKGLMWFRRDLRTHDNAALFYALKHCE-QVHCVFVYDKTILDALPNK------ADRRVEF 73 Query: 61 IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120 I+ S + ++ L +G H +D + + + V +F N+ YE + RD Sbjct: 74 IWESCMALKTKL--QGFGGDLHLM--YDHAETAIPDLATKLGVQAVFTNKDYEPAAIHRD 129 Query: 121 KLLEKRLQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPV 179 + K LQ + I F D + +L A + + V+TPF+ A ++ L L P Sbjct: 130 ITVGKTLQGKGIELFRFKDQAIFEEDEVLTQAGKFFSVFTPFKNACLKKLDAFHLTPYPS 189 Query: 180 PAIRLTGPVTPSNI--PRFFDYPFQAID--PMFPIGEQNALHILRKFCKEKVYYYVEQRD 235 A R+ SN+ P F+ + M GE+ AL F Y V RD Sbjct: 190 EA-RVGSLAKDSNLTAPSLDHMGFKRTNLLDMIKPGEEGALDAFEDFLNRMDKYKV-ARD 247 Query: 236 IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLM 295 PAI+G S LS + G +S R+ + F GA WLNELIWR+FY ++ Sbjct: 248 FPAIKGVSYLSVHNRFGTISIRRLAKAAYDRFK---FDGSEGAMGWLNELIWRDFYFQII 304 Query: 296 AFYPSVCMGKPFIPWTEKIEWNKDS---HLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNR 352 P K F P ++I+W+ D L +AW +G TG+P++DAA RQLN G+ HNR Sbjct: 305 YHRPDAAE-KAFKPEYDQIQWDADEKAQRLFKAWCEGKTGYPLVDAAQRQLNQTGFQHNR 363 Query: 353 LRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPT 412 LRM+TASFL KDL +DWR GE+YF L D DL++NNGGWQWAAS+G D+ PYFRIFNP Sbjct: 364 LRMVTASFLTKDLGLDWRWGEKYFAEHLNDFDLSANNGGWQWAASSGCDAQPYFRIFNPY 423 Query: 413 IQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSW------LDKNDLSLNYPLPIVDHKKA 466 Q ++FD G FIR + PEL + +YIH P + L YP P+V+H A Sbjct: 424 SQSEKFDADGKFIRKYCPELAKLSNKYIHNPAECPPFELQMAGVVLGETYPRPVVEHDVA 483 Query: 467 CHHTLNQYYAAKK 479 TL +Y KK Sbjct: 484 RKKTLERYSVVKK 496 >gi|255022161|ref|ZP_05294164.1| Deoxyribodipyrimidine photolyase [Acidithiobacillus caldus ATCC 51756] gi|254968425|gb|EET25984.1| Deoxyribodipyrimidine photolyase [Acidithiobacillus caldus ATCC 51756] Length = 476 Score = 276 bits (707), Expect = 5e-72, Method: Compositional matrix adjust. Identities = 175/499 (35%), Positives = 263/499 (52%), Gaps = 57/499 (11%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 +V RNDLR+ D+ AL+ A V+ V++ +G + R H SLL++Q Sbjct: 7 IVLFRNDLRLADHPALWYAAQRG--PVLPVYLRHAAD--SYGSAWRWWHG--ESLLKLQA 60 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH- 129 +L+Q+G+ S ++ L +++NR+Y+ + + D+ L+ + Sbjct: 61 ALAQRGLPLLLR--SGTAKAV--LPEIVRASGADAVYWNRRYDRDGIAEDQELKSLFKEL 116 Query: 130 RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189 V +SF ++L+ P L Q Y+V+TPF KA++ P P Sbjct: 117 GVEARSFPGNLLVEPWEHLREG-QPYRVFTPFWKAMLAR------HRFPQPLAEPESYRA 169 Query: 190 PSNIPRFFDYPFQAIDPMFP-----------IGEQNALHILRKFCKEKVYYYVEQRDIPA 238 P+ IP D P P +GE+ A LR F E + +Y E R++P Sbjct: 170 PTAIPASEDLARWGWHPHHPDWSIGLARHWEVGEEAAWRRLRDFVDEGLAHYAEGRNLPG 229 Query: 239 IQGTSQLSPYLSIGVLSPRQCW---NRLKEEFVDLLIKPKSGAF-----SWLNELIWREF 290 S+LSPYL+ G +SPRQ W +RL EE GA+ ++L EL WREF Sbjct: 230 KPFVSRLSPYLAHGEISPRQIWWHLSRLAEE---------QGAWRRNVDAFLRELGWREF 280 Query: 291 YRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMH 350 HL+ +P + +P P ++ W +D L+AW + TG+PIIDA MR+L GWMH Sbjct: 281 SWHLLYHFPDLPR-EPLRPEFQRFPWRQDPAALRAWTRARTGYPIIDAGMRELWESGWMH 339 Query: 351 NRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFN 410 NR+RMI ASFLVKDL + W+ GE +F L+D DLA+N+ WQW A G D+ PYFR+FN Sbjct: 340 NRVRMIVASFLVKDLRIPWQEGEAWFWDTLVDADLANNSASWQWVAGCGADAAPYFRVFN 399 Query: 411 PTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSW------LDKNDLSLN--YPLPIVD 462 P +Q ++FDPQG ++R WLP+L +P +IHAP W L++ ++L YP P+VD Sbjct: 400 PVLQAQKFDPQGDYVRRWLPQLQRLPADHIHAP--WQAPAVVLEQAGIALGKEYPRPLVD 457 Query: 463 HKKACHHTLNQYYAAKKQS 481 H +A L + A ++++ Sbjct: 458 HHEAREAALAAWEAIRREN 476 >gi|90020376|ref|YP_526203.1| deoxyribodipyrimidine photo-lyase type I [Saccharophagus degradans 2-40] gi|89949976|gb|ABD79991.1| Deoxyribodipyrimidine photo-lyase type I [Saccharophagus degradans 2-40] Length = 483 Score = 276 bits (707), Expect = 5e-72, Method: Compositional matrix adjust. Identities = 173/493 (35%), Positives = 256/493 (51%), Gaps = 48/493 (9%) Query: 11 LVWLRNDLRITDNKALYAACHNSDA--KVIAVFIA-TPEQWRQHGISARQSHFIYASLLQ 67 L+WL N+LR++DN AL+AA ++DA +V+ +I T W G +A +++ SL Sbjct: 4 LLWLSNNLRLSDNPALHAAVDSADANGEVLPAYIKDTANPWPIQGAAAW---WLHHSLAA 60 Query: 68 VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127 S+ KG V + D + Q ++ ++ ++ +E EV+ + K Sbjct: 61 FTNSIKNKGGVLSLFE----GDPATLVPELISQNKIDAVYLSQGFEPYEVQLQANIHKWC 116 Query: 128 -QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 QH + CK F +LL P + LN + ++V+TP+ KA + R+ P+P+ L Sbjct: 117 KQHNIECKRFAGHLLLNPDTHLNKQGKPFQVFTPYYKAAL--ATHTIPRAKPIPS-NLAK 173 Query: 187 PVTPSNIPRFFDYPFQA----------IDPMFPIGEQNALHILRKFCKEKVYYYVEQRDI 236 +P+ + + GE+ A LR+ ++K+ Y RD Sbjct: 174 VWAAKKLPKSVALNKLKLLPNLNWADQFNSQWQPGEEGAHKNLREAIEDKIASYTRDRDF 233 Query: 237 PAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMA 296 PA+ GTS LS +L G +SPRQ W ++ + P +L +L+WR+F L+ Sbjct: 234 PAVDGTSLLSAHLRFGEISPRQIWQQVATQMDGEQCAP------FLRQLMWRDFSYALLH 287 Query: 297 FYPSVCMGKPFIPWTEKIEWNKDSH-----LLQAWKQGYTGFPIIDAAMRQLNTIGWMHN 351 +P + + F EK W K S+ L AW+ G TG+PI+DA MRQL GWMHN Sbjct: 288 HWPHIPQ-QAFKQQFEKFPWQKASNKNVAKQLHAWQTGTTGYPIVDAGMRQLWQTGWMHN 346 Query: 352 RLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNP 411 R+RMI ASFL K L + W G ++F L+D DLA+N GWQW A G D+ PYFRIFNP Sbjct: 347 RVRMIVASFLTKHLRIHWHEGAKWFWDTLVDADLANNTAGWQWVAGCGADAAPYFRIFNP 406 Query: 412 TIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDL----------SLNYPLPIV 461 +QG++FD QG +I+ W+PEL +P ++IHAP WL D+ + YPLPIV Sbjct: 407 VLQGEKFDKQGEYIKTWVPELAALPAKFIHAP--WLAPQDILQTAGISLGNNSTYPLPIV 464 Query: 462 DHKKACHHTLNQY 474 DHK A L Y Sbjct: 465 DHKYAREAALAAY 477 >gi|289617143|emb|CBI56211.1| unnamed protein product [Sordaria macrospora] Length = 554 Score = 276 bits (706), Expect = 6e-72, Method: Compositional matrix adjust. Identities = 160/460 (34%), Positives = 247/460 (53%), Gaps = 54/460 (11%) Query: 13 WLRNDLRITDNKALYAA---CHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69 W + DLR+ DN++L+ A + +I +++ +PE H + + F+ +L ++ Sbjct: 114 WFKMDLRLHDNRSLWLASQKAQEAGVPLICLYVLSPEDLEAHLRAPIRVDFMLRTLEILK 173 Query: 70 KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK---R 126 + L GI W+++Y E++E+RR+ L K Sbjct: 174 RDLEALGIPL-------------WIETY---------------EVDELRREARLVKIFAE 205 Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQA----DLRSLPVP-- 180 +++ + D+ ++ PG++ + + Y VY+P+ +A I+++ + ++ P+P Sbjct: 206 GDEKMVAEVVHDTCVVMPGALKSGSGGQYAVYSPWYRAWIKHVEENPDCLEIYEKPLPNP 265 Query: 181 -------AIRLTGPVTPS----NIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYY 229 A T P+ P+ N+P D ++P GE AL L KFC E + Sbjct: 266 PSTKSKYAHLFTCPIPPAPENKNLPDN-DETKARYRALWPAGEHEALKRLHKFCDENIGK 324 Query: 230 YVEQRDIPAIQG-TSQLSPYLSIGVLSPRQCWNRLKEEF-VDLLIKPKSGAFSWLNELIW 287 Y E+RDIP+++G TS+LS + + G LS R ++ L G W++E+ W Sbjct: 325 YAERRDIPSVEGGTSKLSVHFASGTLSARTAIRAARDRNNTKRLNGGNEGIQRWISEVAW 384 Query: 288 REFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIG 347 REFYRH++ +P VCM KPF P I W+ + AW G TG+PIIDAAMRQ+ + G Sbjct: 385 REFYRHVLVGWPYVCMNKPFKPLYSNITWSYNPTHFHAWTSGQTGYPIIDAAMRQVLSTG 444 Query: 348 WMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFR 407 +M NRLRMI ASFL KDLL+DWR+GE YFM L+DGD ASNNGGW +AAS G D PYFR Sbjct: 445 FMPNRLRMIVASFLAKDLLIDWRMGERYFMEHLIDGDFASNNGGWGFAASVGVDPQPYFR 504 Query: 408 IFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWL 447 +FNP +Q ++FD G +IR W+ EL ++ + W+ Sbjct: 505 VFNPLLQSEKFDEGGEYIRRWVEELRDLEGGKLGGKGGWI 544 >gi|83746230|ref|ZP_00943284.1| Deoxyribodipyrimidine photolyase [Ralstonia solanacearum UW551] gi|83727196|gb|EAP74320.1| Deoxyribodipyrimidine photolyase [Ralstonia solanacearum UW551] Length = 560 Score = 276 bits (705), Expect = 7e-72, Method: Compositional matrix adjust. Identities = 182/499 (36%), Positives = 252/499 (50%), Gaps = 47/499 (9%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFI---ATPEQWRQHGISA-RQSHFIYASLL 66 LVW R DLR D+ AL+ A + +V F+ + HG+ A R+ FI A++ Sbjct: 66 LVWFRRDLRHIDHAALHYALRHCR-EVFCAFVFDRGILDPLLAHGLRADRRVEFIRAAVE 124 Query: 67 QVQKSLSQKG---IVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLL 123 ++ +L + G IV D + + S Q V +F N E + RD + Sbjct: 125 ALRGALREAGGELIVLH-------DHAHHAIPSLAQQLGVEAVFANHDEEPAALARDAAV 177 Query: 124 EKRLQHRVICK--SFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPV-P 180 L R C F D V+ +LN + Y V+TP++ A + + DLR+ P+ P Sbjct: 178 RDALA-RQPCAWLDFKDQVIFERAEVLNGQGKPYGVFTPYKNAWLAAVSPFDLRAYPIEP 236 Query: 181 AIRLTG-------PVTPS-NIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVE 232 + P TPS F AI P G A +L F Y+ Sbjct: 237 HLHALARPPQGLAPATPSLEAMGFARSNLSAI--ALPTGMSGAEALLDDFATRMDDYHA- 293 Query: 233 QRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYR 292 +RD PA++G S LS +L G +S R L ++ GA +WL+ELIWR+FY Sbjct: 294 RRDYPAVRGPSYLSTHLRFGTVSIRT----LAAHAHAAMLHGSRGAATWLSELIWRDFYF 349 Query: 293 HLMAFYPSVCMGKPFIPWTEKIEW---NKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWM 349 ++ P + G F P ++I W + AW+ TG+P++DAAM Q+ G+M Sbjct: 350 MILHHRPDLAGGASFRPEFDRIRWVDGDAGDVRFAAWRDARTGYPLVDAAMLQIRQSGYM 409 Query: 350 HNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIF 409 HNRLRM+ ASFL+KDL VDWR GE YF L D D A+NNGGWQWAAS+G D+ P+FRIF Sbjct: 410 HNRLRMVAASFLIKDLGVDWRRGEHYFADALNDFDFAANNGGWQWAASSGCDAQPWFRIF 469 Query: 410 NPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND--------LSLNYPLPIV 461 NP Q ++FDPQG FIR +LP+L +P +Y+HAP W D L YP PIV Sbjct: 470 NPVTQSEKFDPQGHFIRKYLPQLAKLPDRYLHAP--WTAPADVLKTAGVALGETYPRPIV 527 Query: 462 DHKKACHHTLNQYYAAKKQ 480 +H A TL +Y AK + Sbjct: 528 EHAAARAATLERYAPAKVE 546 >gi|159898493|ref|YP_001544740.1| deoxyribodipyrimidine photo-lyase [Herpetosiphon aurantiacus ATCC 23779] gi|159891532|gb|ABX04612.1| Deoxyribodipyrimidine photo-lyase [Herpetosiphon aurantiacus ATCC 23779] Length = 486 Score = 275 bits (704), Expect = 8e-72, Method: Compositional matrix adjust. Identities = 183/489 (37%), Positives = 258/489 (52%), Gaps = 33/489 (6%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 + W R DLR+TD++ALYAA S VI VFI + A A L + Sbjct: 4 ICWFRRDLRLTDHRALYAAAEASAGAVIPVFILDDTILHDGYVGAALIAVTLAMLEALDH 63 Query: 71 SLSQKG--IVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128 L Q+G ++ ++ Q + L + + + +++NR Y ++RD ++ L+ Sbjct: 64 DLQQRGSRLIVRHGQ------PLAELQRLVSETQASGVYWNRDYLPYAIKRDSAVKHWLR 117 Query: 129 HRVI-CKSFDDSVLLPPGSILNHALQM-YKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 + + SF DSVL+ P + Q Y VY + K + + +P P+ + Sbjct: 118 EQGLQAHSFHDSVLVEPEGLKTKTEQKPYVVYGSYVKRWSELAYHQAEQLVPAPSKFVAP 177 Query: 187 PVTPSN--IPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEK----VYYYVEQRDIPAIQ 240 P ++ IP D F+ + +GE A L +F + V Y + R++PA Sbjct: 178 PSDLASLPIPSLADLGFELQQTIPQVGETIAQQRLAQFFDRRQKLSVLKYTKAREVPAEA 237 Query: 241 GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKP-----KSGAFSWLNELIWREFYRHLM 295 GTSQLS L +G +S RQC LK+ VDLL +P + G +WL EL WR++Y L+ Sbjct: 238 GTSQLSVDLRMGTISIRQC---LKQA-VDLLTEPLNAEQRQGVDTWLKELAWRDYYTQLI 293 Query: 296 AFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRM 355 P + G P ++I W D AW+QG TG+PI+DA RQLN + WMHNR+RM Sbjct: 294 YHNPYMLNGS-LDPRYDQIIWRNDPSEFLAWQQGQTGYPIVDAGQRQLNQMAWMHNRVRM 352 Query: 356 ITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAA-STGNDSVPYFRIFNPTIQ 414 I+ASFL+KDLL+DWR GE YFM QL DGD +NNGGWQWAA S+G + PYFRIFNP Q Sbjct: 353 ISASFLIKDLLIDWRWGERYFMQQLCDGDPTANNGGWQWAAGSSGPSAQPYFRIFNPIAQ 412 Query: 415 GKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND------LSLNYPLPIVDHKKACH 468 K+ DP G +IR ++PEL NVP YIH P + + +YP P+V+H A Sbjct: 413 SKKHDPDGQYIRRFVPELANVPDHYIHEPWTMPPAVQAHVGCVIGRDYPAPLVEHSFARE 472 Query: 469 HTLNQYYAA 477 L Y A Sbjct: 473 RALAAYRTA 481 >gi|134095905|ref|YP_001100980.1| deoxyribodipyrimidine photolyase [Herminiimonas arsenicoxydans] gi|133739808|emb|CAL62859.1| Deoxyribodipyrimidine photolyase [Herminiimonas arsenicoxydans] Length = 493 Score = 275 bits (704), Expect = 1e-71, Method: Compositional matrix adjust. Identities = 180/493 (36%), Positives = 259/493 (52%), Gaps = 37/493 (7%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 LVW R DLR D+ AL+ A S +V VFI + R+ FI+ASLL++ + Sbjct: 8 LVWFRRDLRSVDHAALHHALAQS-RQVYCVFIFDRAILDALPRADRRVEFIHASLLELAQ 66 Query: 71 SLSQ--KGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128 +L G++ Q+ + ++ V +F N YE + RD + LQ Sbjct: 67 ALRALGGGLIVQHAWAETA------IPELAIELGVDAVFANHDYEPQAITRDAHVAAALQ 120 Query: 129 HRV-ICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLV----QADLRSLPVPAIR 183 +F D V+ +L A + + V+TP++ A ++ L +A LR + A Sbjct: 121 AAGRSLHTFKDQVVFEKNEVLTQAEKPFSVFTPYKNAWLKKLYAESNEATLRPYEIDAYA 180 Query: 184 ---LTGPVTPSNIPRFFDYPFQAI---DPMFPIGEQNALHILRKFCKEKVYYYVEQRDIP 237 + P + IP D F+ D P G Q A +L F +++ Y + RD P Sbjct: 181 DRFVNLPESKFPIPSLTDLGFEKTNLPDLNIPTGMQGAQDLLDAFA-DRMQRYDQTRDFP 239 Query: 238 AIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAF 297 A++G S LS ++ G +S R R + +GA WL+EL+WR+FY ++ Sbjct: 240 ALKGPSYLSVHVRFGTVSIRALARRALDAM--RTGTGGNGAAVWLSELVWRDFYFMILFQ 297 Query: 298 YPSVCMGKPFIPWTEKIEWNKDSH---LLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLR 354 +P V + F + I W H L QAW G TG+P++DAAM QLN G+MHNRLR Sbjct: 298 HPHV-VDHAFKADYDAITWESGDHARRLFQAWCDGQTGYPLVDAAMAQLNQTGYMHNRLR 356 Query: 355 MITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQ 414 M+TASFL+KDL +DWR GE YF +L D DLA+NNGGWQWA+S+G D+ PYFRIFNP Q Sbjct: 357 MVTASFLIKDLGIDWRWGEHYFAEKLNDFDLAANNGGWQWASSSGCDAQPYFRIFNPITQ 416 Query: 415 GKRFDPQGTFIRHWLPELNNVPTQYIHAPHSW--------LDKNDLSLNYPLPIVDHKKA 466 ++FD QG FIR +LP+L + ++IHAP W + ++ NYP P+V H +A Sbjct: 417 SEKFDQQGKFIRRYLPQLAKLSDRHIHAP--WCAPALELRMAGVEIGNNYPGPLVQHDEA 474 Query: 467 CHHTLNQYYAAKK 479 TL +Y KK Sbjct: 475 RARTLQRYAVVKK 487 >gi|207744141|ref|YP_002260533.1| deoxyribodipyrimidine photolyase, class 1 protein [Ralstonia solanacearum IPO1609] gi|206595545|emb|CAQ62472.1| putative deoxyribodipyrimidine photolyase, class 1 protein [Ralstonia solanacearum IPO1609] Length = 522 Score = 275 bits (704), Expect = 1e-71, Method: Compositional matrix adjust. Identities = 182/499 (36%), Positives = 252/499 (50%), Gaps = 47/499 (9%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFI---ATPEQWRQHGISA-RQSHFIYASLL 66 LVW R DLR D+ AL+ A + +V F+ + HG+ A R+ FI A++ Sbjct: 28 LVWFRRDLRHIDHAALHYALRHCR-EVFCAFVFDRGILDPLLAHGLRADRRVEFIRAAVE 86 Query: 67 QVQKSLSQKG---IVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLL 123 ++ +L + G IV D + + S Q V +F N E + RD + Sbjct: 87 ALRGALREAGGELIVLH-------DHAHHAIPSLAQQLGVEAVFANHDEEPAALARDAAV 139 Query: 124 EKRLQHRVICK--SFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPV-P 180 L R C F D V+ +LN + Y V+TP++ A + + DLR+ P+ P Sbjct: 140 RDALA-RQPCAWLDFKDQVIFERAEVLNGQGKPYGVFTPYKNAWLAAVSPFDLRAYPIEP 198 Query: 181 AIRLTG-------PVTPS-NIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVE 232 + P TPS F AI P G A +L F Y+ Sbjct: 199 HLHALARPPQGLAPATPSLEAMGFARSNLSAI--ALPTGMSGAEALLDDFATRMDDYHA- 255 Query: 233 QRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYR 292 +RD PA++G S LS +L G +S R L ++ GA +WL+ELIWR+FY Sbjct: 256 RRDYPAVRGPSYLSTHLRFGTVSIRT----LAAHAHAAMLHGSRGAATWLSELIWRDFYF 311 Query: 293 HLMAFYPSVCMGKPFIPWTEKIEW---NKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWM 349 ++ P + G F P ++I W + AW+ TG+P++DAAM Q+ G+M Sbjct: 312 MILHHRPDLAGGASFRPEFDRIRWVDGDAGDVRFAAWRDARTGYPLVDAAMLQIRQSGYM 371 Query: 350 HNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIF 409 HNRLRM+ ASFL+KDL VDWR GE YF L D D A+NNGGWQWAAS+G D+ P+FRIF Sbjct: 372 HNRLRMVAASFLIKDLGVDWRRGEHYFADALNDFDFAANNGGWQWAASSGCDAQPWFRIF 431 Query: 410 NPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND--------LSLNYPLPIV 461 NP Q ++FDPQG FIR +LP+L +P +Y+HAP W D L YP PIV Sbjct: 432 NPVTQSEKFDPQGHFIRKYLPQLAKLPDRYLHAP--WTAPADVLKTAGVALGETYPRPIV 489 Query: 462 DHKKACHHTLNQYYAAKKQ 480 +H A TL +Y AK + Sbjct: 490 EHAAARAATLERYAPAKVE 508 >gi|148358421|ref|YP_001249628.1| deoxyribodipyrimidine photolyase [Legionella pneumophila str. Corby] gi|148280194|gb|ABQ54282.1| deoxyribodipyrimidine photolyase [Legionella pneumophila str. Corby] Length = 471 Score = 275 bits (703), Expect = 1e-71, Method: Compositional matrix adjust. Identities = 176/491 (35%), Positives = 266/491 (54%), Gaps = 41/491 (8%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M++ LVW R DLR+TDN A AC + + VI ++I + + Q+ +++ SL+ Sbjct: 1 MTIALVWFRQDLRLTDNPAFIEACSHHEI-VIPLYIYDD---KCSVLGQAQAWWLHHSLI 56 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 + KSL+Q+G+ + S + +E + Y V +++NR YE RDK ++ Sbjct: 57 ALGKSLNQQGLSLVLRKGSPQEIILELVSQYG----VESVYWNRCYEPPVFARDKKIKLA 112 Query: 127 LQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185 L R I +SF+ ++L P +I N +KV+TP+ K Q L ++P P + Sbjct: 113 LGEREIKAQSFNGNLLHEPWAIKNKNGDFFKVFTPYWKQCRQIL------NIPSPLMLTK 166 Query: 186 GP----VTPSNIPRFFDYPF----QAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIP 237 P +T +I ++ P + GE+ A L +F + Y RD P Sbjct: 167 RPRGIEITSDDIDKWKLLPAINWAARFSEYWTPGEKGAQKKLDEFIIHHLSGYKRDRDFP 226 Query: 238 AIQGTSQLSPYLSIGVLSPRQCWNRLK----EEFVDLLIKPKSGAFSWLNELIWREFYRH 293 A TS+LSP+L G +SP L+ E+ DL + +L+EL WREF + Sbjct: 227 AKNATSRLSPHLHFGEISPWVILRALELTKLEQTCDL-----ASVEHFLSELGWREFSVY 281 Query: 294 LMAFYPSV-CMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNR 352 L+ +P + C + F + W D LL W++G TG+P+IDA MR+L G+MHNR Sbjct: 282 LLYHFPKLDC--ENFRNEFDAFPWQNDEQLLTRWQKGMTGYPLIDAGMRELWATGYMHNR 339 Query: 353 LRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPT 412 +RMI ASFL KDLL+DWR+G ++F+ L+D DLA+N+ WQW A G D+ PYFRIFNP Sbjct: 340 VRMIVASFLTKDLLIDWRLGAQWFLDTLVDADLANNSASWQWVAGCGADAAPYFRIFNPV 399 Query: 413 IQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSL----NYPLPIVDHKKACH 468 +Q ++FDP G +IR W+PEL + +Q IH P W D + S+ YP PI++H++A Sbjct: 400 LQSQKFDPDGVYIRQWIPELAQLNSQSIHQP--WTDASASSIFLGNKYPKPIINHQEART 457 Query: 469 HTLNQYYAAKK 479 L+ Y KK Sbjct: 458 KALSYYQQIKK 468 >gi|294341149|emb|CAZ89550.1| putative Deoxyribodipyrimidine photo-lyase PhrB [Thiomonas sp. 3As] Length = 497 Score = 275 bits (702), Expect = 1e-71, Method: Compositional matrix adjust. Identities = 178/512 (34%), Positives = 258/512 (50%), Gaps = 59/512 (11%) Query: 2 KATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFI---ATPEQWRQHGISA-RQ 57 A + + LVWLR DLR+ DN AL+AA D KV F+ + Q G+ A R+ Sbjct: 12 SAVEKLPLGLVWLRRDLRLHDNAALHAALRACD-KVALAFVFDRDILDPLLQRGLQADRR 70 Query: 58 SHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEV 117 FI A++ ++ +L + G S + E + + + +F R E + Sbjct: 71 VEFILAAVAEIDAALREHGAALIVRHAS----AREAIPALAAELGAQTVFCGRDDEPEAL 126 Query: 118 RRDKLLEKRL-QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALI-------QNL 169 RD +E+ L Q ++ + ++ +L + Y V+TP+R A + Q Sbjct: 127 ARDAAVERALRQDGRALRTVKEHMIFERDEVLTAQGKPYSVFTPYRTAWLARYAAQPQQP 186 Query: 170 VQADLRSL-----------PVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHI 218 V + + S P+P + G PSN+ P+G A + Sbjct: 187 VDSAVTSARLAALPAALRQPLPTLSELG-FAPSNLHAL----------KLPLGASGAAAL 235 Query: 219 LRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQ----CWNRLKEEFVDLLIKP 274 + F + ++ Y + RD PA +G S LS +L G +S R+ W R + Sbjct: 236 VDDFSR-RIDDYDQARDYPARKGPSYLSVHLRFGTVSVRELVAMAWARQQ--------AG 286 Query: 275 KSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFP 334 GA WL+EL+WR+FY ++ +P V + F P ++I+W D AW +G TG+P Sbjct: 287 SEGARVWLSELVWRDFYFQILFHHPHV-VNAAFKPVYDRIQWRNDPAQFAAWCEGRTGYP 345 Query: 335 IIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQW 394 ++DAAMRQ+N G+MHNRLRM+ ASFL KDL +DWR GE YF L D DLA+NNGGWQW Sbjct: 346 LVDAAMRQINQTGYMHNRLRMVVASFLTKDLGIDWRWGERYFADHLNDFDLAANNGGWQW 405 Query: 395 AASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIH----APHSWLDKN 450 AAS+G D+ PYFRIFNP Q ++FD G FIR ++PEL ++ IH AP + L Sbjct: 406 AASSGCDAQPYFRIFNPVAQSEKFDAGGDFIRRYVPELAQFASKDIHAPWKAPAALLQAA 465 Query: 451 DLSLN--YPLPIVDHKKACHHTLNQYYAAKKQ 480 + L YP+PIV H A TL +Y K Q Sbjct: 466 GVRLGSTYPVPIVRHDLARAETLERYAVVKAQ 497 >gi|170017540|ref|YP_001728459.1| deoxyribodipyrimidine photolyase [Leuconostoc citreum KM20] gi|169804397|gb|ACA83015.1| Deoxyribodipyrimidine photolyase [Leuconostoc citreum KM20] Length = 478 Score = 275 bits (702), Expect = 1e-71, Method: Compositional matrix adjust. Identities = 184/488 (37%), Positives = 251/488 (51%), Gaps = 35/488 (7%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 V +VW+R D RI DN AL AA NSD+ V+ VFI PEQ S QS F +AS Sbjct: 4 VSIVWIRRDFRIQDNLALAAATENSDS-VLLVFIVDPEQIETTA-SLNQSAF-FASAKAF 60 Query: 69 QKSLSQKGI---VFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125 Q +L+ + I V + S F+ L ++ L++N +RD+ + Sbjct: 61 QANLANENIHLLVLKGTPESQFEKLTAALP------EISDLYFNFDERGYGRQRDQQVAH 114 Query: 126 RLQHRVICKS--FDDSVLLPPGSILNHALQMYKVYTPFRKALIQ----NLVQADLRSLPV 179 Q + K+ + D L I Y+++TP+ K I V+A + SL Sbjct: 115 HCQTTLGLKTHAYIDYNLHSANEIKKADGAGYQIFTPYFKRWITLPKPTPVKASVTSLQG 174 Query: 180 PAIRLTGPVTPSNIPRFFDYPFQAIDPMF--PIGEQNALHILRKFCKEKVYYYVEQRDIP 237 + P+ + D +GE AL L+ F + + Y QRD+P Sbjct: 175 KQMANIEPLHLHQEGLLTSLINEKHDKQLVGQVGEAKALQTLKDFIQSHLSEYDTQRDLP 234 Query: 238 AIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKS-GAFSWLNELIWREFYRHLMA 296 + TS LS YL G ++ R + + E P+S G +++ EL WR++Y + A Sbjct: 235 FLDATSHLSRYLRTGEIAIRTIYQAVINE-------PESEGQQTFIKELAWRDYYNMIYA 287 Query: 297 FYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMI 356 P + P +KI W + + W+ G TGFPI+DAAMRQLN GWMHNRLRMI Sbjct: 288 MNPQQNT-QSLRPEFQKIAWRNNHNDFLLWQTGQTGFPIVDAAMRQLNQTGWMHNRLRMI 346 Query: 357 TASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGK 416 ASFL KDLL+DWR GE+YF QLLD D ASN GGWQWAASTG DSVPYFRIFNPT Q + Sbjct: 347 VASFLTKDLLIDWRWGEQYFHDQLLDYDPASNIGGWQWAASTGTDSVPYFRIFNPTRQSQ 406 Query: 417 RFDPQGTFIRHWLPELNNVPTQYIHAPHSWLD------KNDLSLNYPLPIVDHKKACHHT 470 +FDP G FI+ ++PEL+ + IH P D + L +YP P+V HK+A Sbjct: 407 KFDPDGKFIKQFVPELSQITNDKIHEPQLLTDLEQKEFQVTLDKDYPKPMVTHKQARLRA 466 Query: 471 LNQYYAAK 478 + Y +K Sbjct: 467 IEVYEQSK 474 >gi|254418176|ref|ZP_05031900.1| deoxyribodipyrimidine photolyase family [Brevundimonas sp. BAL3] gi|196184353|gb|EDX79329.1| deoxyribodipyrimidine photolyase family [Brevundimonas sp. BAL3] Length = 488 Score = 275 bits (702), Expect = 2e-71, Method: Compositional matrix adjust. Identities = 176/490 (35%), Positives = 250/490 (51%), Gaps = 40/490 (8%) Query: 3 ATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIY 62 A A ++W R DLR+ DN ALY A ++ VFI + R G A ++ Sbjct: 4 ACVATKPVVLWFRRDLRLNDNPALYHAVATG-RPILPVFILDRDPDRPAG--AASLWWLD 60 Query: 63 ASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKL 122 SL + SL ++G + DS+ L S LF NR +E RD Sbjct: 61 KSLRALDDSLRERGSRLILRRG----DSLTQLQSLIEDTGADALFMNRLFEPAAFARDAE 116 Query: 123 LEKRLQHR-VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADL----RSL 177 + L+ V C+ F+ S+L PG++LN + YKV+TPF KAL+ R + Sbjct: 117 IAHELKSAGVDCRGFNGSLLARPGAVLNGSDAPYKVFTPFMKALLATAEPPPPTTAPRRI 176 Query: 178 PVPAIRLTGPV-------TPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYY 230 P T + T S+ + FD+ GE A L F + Y Sbjct: 177 ATPDAVQTESIDDWRLHPTRSDWSKGFDWT---------PGEAGADAALSDFLARGLKTY 227 Query: 231 VEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREF 290 + RD PA+ TS+LSP+L G +SP + R + + P A ++ EL WR+F Sbjct: 228 AKGRDHPALPTTSRLSPHLHWGEISPWRAAQRARGAADAGAV-PAGEADKFVAELGWRDF 286 Query: 291 YRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMH 350 HL+ +P++ + F P E + W D L+AWK+G TG+P++DA MRQL T GWMH Sbjct: 287 SAHLLHHFPTIT-DRAFRPEYESMPWRGDPEGLEAWKRGRTGYPLVDAGMRQLWTTGWMH 345 Query: 351 NRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFN 410 NR+RM+ ASFLVK LL+DWR GE +F L+D DLASN WQW A +G D+ PYFRIFN Sbjct: 346 NRVRMVVASFLVKHLLIDWREGEAWFWDTLVDADLASNVQNWQWVAGSGADAAPYFRIFN 405 Query: 411 PTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND--------LSLNYPLPIVD 462 P QG++FD G ++R W+PEL +P +++ +P W + L +YP PI+D Sbjct: 406 PITQGEKFDATGGYVRRWVPELRRLPDRWLPSP--WTAPPEVLRDAGVRLGKDYPHPILD 463 Query: 463 HKKACHHTLN 472 H +A L+ Sbjct: 464 HAQARARALD 473 >gi|194014306|ref|ZP_03052923.1| deoxyribodipyrimidine photo-lyase [Bacillus pumilus ATCC 7061] gi|194013332|gb|EDW22897.1| deoxyribodipyrimidine photo-lyase [Bacillus pumilus ATCC 7061] Length = 477 Score = 275 bits (702), Expect = 2e-71, Method: Compositional matrix adjust. Identities = 168/488 (34%), Positives = 255/488 (52%), Gaps = 25/488 (5%) Query: 7 MSVHLVWLRNDLRITDNKALYAA---CHNSDAKVIAVFIATPEQWRQHGISARQSHFIYA 63 M + ++W R D+R+ D+ AL A + K++A++ P + + + HF Sbjct: 1 MEIVVIWFRRDMRLDDHIALSKAITYAKKHEYKLLALYHLDP-FFTEMEMDINNEHFFQN 59 Query: 64 SLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLL 123 V+++ + V H DD + + +F+N RRDK + Sbjct: 60 LAHFVKEARESQVYVHLLH-----DDVLRAFQQVMEVYDIKAVFFNEDEVGIGQRRDKQV 114 Query: 124 EKRLQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPF----RKALIQNLVQADLRSLP 178 L+ + I ++ D+ L IL Y+V+TP+ RK Q +++ D Sbjct: 115 TDFLEKKGIHVSTWQDTHLHGARDILKADGSHYQVFTPYYQSWRKQEKQPVIKVDKSFFS 174 Query: 179 VPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPA 238 P++ + + IG A++ L +F ++++ Y E+RDIP+ Sbjct: 175 SEHTICDEPLSQKGNDKLRELIKGCSRKFDQIGSDKAMNTLHQFIQKRLTRYHEKRDIPS 234 Query: 239 IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFY 298 + GTS+LS +L G +S R ++ + EE + G +++ EL WR+FY + A Y Sbjct: 235 VFGTSKLSRFLKTGTISIRTIFHAIYEE----ALYEDEGRETFIKELAWRDFYHMIYAHY 290 Query: 299 PSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITA 358 P + K + ++WN+D L +AW +G TGFP++DA MRQLN GWMHNRLRM+TA Sbjct: 291 PEM-KEKEINSAFQGMKWNEDETLFEAWCKGETGFPLVDAGMRQLNEEGWMHNRLRMVTA 349 Query: 359 SFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRF 418 SFL KD L+DWR GE YF +L+D D ASN GG+QWAAS G D+VPYFRIFNPT Q KRF Sbjct: 350 SFLTKDYLIDWRKGESYFAKKLVDYDEASNIGGFQWAASVGTDAVPYFRIFNPTTQSKRF 409 Query: 419 DPQGTFIRHWLPELNNVPTQYIHAPHSW-LDKN-----DLSLNYPLPIVDHKKACHHTLN 472 DP G IR ++PEL V ++IH P +D+ L YPLP VDH++ ++ Sbjct: 410 DPSGELIRKYVPELERVDEKWIHEPSKMPIDEQLKSGCVLGDTYPLPAVDHQERRKKAIS 469 Query: 473 QYYAAKKQ 480 + AK+Q Sbjct: 470 LFEEAKQQ 477 >gi|37520353|ref|NP_923730.1| DNA photolyase [Gloeobacter violaceus PCC 7421] gi|35211346|dbj|BAC88725.1| DNA photolyase [Gloeobacter violaceus PCC 7421] Length = 479 Score = 274 bits (701), Expect = 2e-71, Method: Compositional matrix adjust. Identities = 172/479 (35%), Positives = 245/479 (51%), Gaps = 18/479 (3%) Query: 8 SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67 S+ +VW R DLR+ DN AL+ A +V+AVFI P + + + +F+ S+L+ Sbjct: 3 SIAIVWHRRDLRVHDNPALWQASRTG-GQVLAVFIVDPTIVERDDTAPARIYFLRESVLE 61 Query: 68 VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127 +QK+ G + ++ L + +++N E RD + L Sbjct: 62 LQKAYRTIGGRL----AVRVGEPVQQLVALAQAVGAGAVYFNDDIEPYARERDARAAEAL 117 Query: 128 QHRVICKSFDDSVLL-PPGSILNHAL-QMYKVYTPFRK---ALIQNLVQADLRSLPVPAI 182 + I +LL P G +L A + Y VYTPF + A + L P + Sbjct: 118 RAAGITVHACAEILLHPAGEVLTAAGGKPYTVYTPFWRQWSAKPKPKPFPTPERLEAPTV 177 Query: 183 RLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGT 242 + + R F A + + GEQ+ L L F +E +Y Y E+RD+P GT Sbjct: 178 EEQSFPELAQLGRPF-----AGELLVSPGEQSGLEQLEAFAREGLYRYGERRDLPGCDGT 232 Query: 243 SQLSPYLSIGVLSPRQCWNRLKEEFVDLL-IKPKSGAFSWLNELIWREFYRHLMAFYPSV 301 S+LS +L G + R W R + + + ++G W EL WREFY++ + P + Sbjct: 233 SRLSAHLKFGTVGIRAVWARTMDAWKQAEHDRDRAGLAVWQQELGWREFYKYELFHLPQL 292 Query: 302 CMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFL 361 G+PF E +W++D + W QG TG+PI+DAAMRQLNT+ WMHNRLRMI ASFL Sbjct: 293 A-GRPFRREFENFQWDEDQERFERWCQGETGYPIVDAAMRQLNTVSWMHNRLRMIVASFL 351 Query: 362 VKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQ 421 KDLL+ + GE YFM +L+DGDL++NNGGWQWAAS G D P RIFNP+ Q R+DP+ Sbjct: 352 TKDLLLPYGWGERYFMQKLVDGDLSANNGGWQWAASVGTDPKP-LRIFNPSTQAGRYDPK 410 Query: 422 GTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQ 480 FIR WLPEL V T + Y PIV+HK+ +Y A + Q Sbjct: 411 AVFIRRWLPELEGVDTALLVTSERLPPLMRAQHRYAQPIVEHKRQQQVFKERYRAVRAQ 469 >gi|288958781|ref|YP_003449122.1| deoxyribodipyrimidine photo-lyase [Azospirillum sp. B510] gi|288911089|dbj|BAI72578.1| deoxyribodipyrimidine photo-lyase [Azospirillum sp. B510] Length = 504 Score = 273 bits (699), Expect = 3e-71, Method: Compositional matrix adjust. Identities = 167/490 (34%), Positives = 251/490 (51%), Gaps = 29/490 (5%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAK---VIAVFIATPEQWRQHGISARQSHFIYASLLQ 67 +VW RNDLR+ DN AL AA + + VI ++I E + Q +++ SL + Sbjct: 21 IVWFRNDLRLADNPALTAAAQMAGERGGAVIPLYILEEETGDPWTLGGAQRWWLHGSLER 80 Query: 68 VQKSLSQKG--IVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125 + ++ G +V + + + LD+ + + +NR+Y + RD +++ Sbjct: 81 LATCCARHGSPLVLRRGEPAAV------LDALIAETGAGCVLWNRRYAPAQTARDAAIKQ 134 Query: 126 RLQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKAL----IQNLVQADLRSLPVP 180 L+ R I +SF+ +L P ++ N + +KV+TPF + L +L P Sbjct: 135 GLKARGIDARSFNAGLLAEPWTVRNKSGGSFKVFTPFWRHLSATLTPPPPTRAPAALKAP 194 Query: 181 AIRLTGPVTPS-NIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAI 239 A G +P + + GE AL L F V Y +RD P Sbjct: 195 ATAPAGDALEGWGLPPTAPDWAAGLRKRWVPGETAALSHLADFLDGPVGVYATERDRPDR 254 Query: 240 QGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYP 299 GTS LSP+L+ G + PRQ W+ + + +G +L E+ WREF HL+ P Sbjct: 255 HGTSTLSPHLAFGEIGPRQVWHAARHAAE-ARPELAAGIDFFLREVGWREFQYHLLHHAP 313 Query: 300 SVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITAS 359 + +P P W +D+ LQAW++G TG+PI+DA MRQL GWMHNR+RMI AS Sbjct: 314 ELPE-RPLDPRFADFPWREDAAGLQAWRRGRTGYPIVDAGMRQLWETGWMHNRVRMIVAS 372 Query: 360 FLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFD 419 FLVKDLL+ W+ GE +F L+D DLA N G WQW A G D+ P+FR+FNP +QG++FD Sbjct: 373 FLVKDLLLPWQEGERWFWDTLVDADLAQNAGNWQWVAGCGADAAPFFRVFNPVLQGEKFD 432 Query: 420 PQGTFIRHWLPELNNVPTQYIHAPHSWLDKND--------LSLNYPLPIVDHKKACHHTL 471 P G ++R ++PEL+ +P ++IH P W + L +YP PI+DH A L Sbjct: 433 PDGDYVRRYVPELDRLPPRWIHQP--WTAPTEILRQAGIRLGADYPRPILDHGAARDRAL 490 Query: 472 NQYYAAKKQS 481 Y K ++ Sbjct: 491 ALYNERKAKA 500 >gi|187927713|ref|YP_001898200.1| Deoxyribodipyrimidine photo-lyase [Ralstonia pickettii 12J] gi|187724603|gb|ACD25768.1| Deoxyribodipyrimidine photo-lyase [Ralstonia pickettii 12J] Length = 518 Score = 273 bits (699), Expect = 3e-71, Method: Compositional matrix adjust. Identities = 178/498 (35%), Positives = 258/498 (51%), Gaps = 49/498 (9%) Query: 11 LVWLRNDLRITDNKAL-YAACHNSDAKVIAVFIATP-EQWRQHGISA-RQSHFIYASLLQ 67 LVW R DLR D+ AL YA H + + VF + G+ A R+ FI AS+ + Sbjct: 21 LVWFRRDLRHFDHAALHYALRHCREVYCVFVFDRDILDALLARGLQADRRIEFIRASIEE 80 Query: 68 VQKSLSQKG---IVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLE 124 ++ +L + G +V H + L+ + +F N E + RD+ + Sbjct: 81 LRSALREAGGDLMVVHDHPRHAIPEIARKLN-------IEAVFANHDEEPSAQARDEAVR 133 Query: 125 KRLQHRVICKSFD--DSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAI 182 K L + C FD D V+ ILN + Y V+TP++ A + L DLR+ P Sbjct: 134 KVLAQQP-CAWFDFKDQVIFERDEILNGQGRPYGVFTPYKNAWLAALTPFDLRAYPTEPY 192 Query: 183 RLTGPVTPSNIPRFFDYPFQAIDPM-----------FPIGEQNALHILRKFCKEKVYYYV 231 L P P +P A++ M P G +L +F ++++ Y Sbjct: 193 -LGALARP---PEALAHPTPALEAMGFAHTNLSEIALPTGMSGGQALLDEF-EDRMDDYH 247 Query: 232 EQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFY 291 +RD PA++G S LS +L G +S R R +++ GA +WL+EL+WR+FY Sbjct: 248 ARRDFPAVRGPSYLSTHLRFGTVSIRTLAARAHAA----MLRGSRGAATWLSELVWRDFY 303 Query: 292 RHLMAFYPSVCMGKPFIPWTEKIEW---NKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGW 348 ++ P + G F P ++I W + +AWK TG+P++DAAM Q+ G+ Sbjct: 304 FMILHHRPDLADGAAFHPEFDRIRWVDGDTGDARFEAWKGAQTGYPLVDAAMLQIFQSGY 363 Query: 349 MHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRI 408 MHNRLRM+ ASFL+KDL +DWR GE+YF L D D ++NNGGWQWAAS+G D+ P+FRI Sbjct: 364 MHNRLRMVAASFLIKDLGIDWRRGEQYFADVLNDFDFSANNGGWQWAASSGCDAQPWFRI 423 Query: 409 FNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND--------LSLNYPLPI 460 FNP Q ++FDPQG FIR +LP+L +P +YIHAP W + L YP PI Sbjct: 424 FNPVTQSEKFDPQGRFIRKYLPQLAKLPDKYIHAP--WTAPANVLKEAGVVLGETYPRPI 481 Query: 461 VDHKKACHHTLNQYYAAK 478 +DH A TL++Y K Sbjct: 482 IDHAGARAATLDRYAVTK 499 >gi|294055436|ref|YP_003549094.1| Deoxyribodipyrimidine photo-lyase [Coraliomargarita akajimensis DSM 45221] gi|293614769|gb|ADE54924.1| Deoxyribodipyrimidine photo-lyase [Coraliomargarita akajimensis DSM 45221] Length = 476 Score = 273 bits (698), Expect = 5e-71, Method: Compositional matrix adjust. Identities = 168/475 (35%), Positives = 255/475 (53%), Gaps = 21/475 (4%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 +VW RNDLR +DN AL AA +A ++ VFI + + A +++ SL + + Sbjct: 7 IVWFRNDLRFSDNAALAAAIAEGNA-ILPVFIRDQVSEGRWPMGAASKWWLHESLKRFAQ 65 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL-QH 129 S + G + DS+ L + + T +++NR+YE + +D +++ L + Sbjct: 66 SWNSCGGDLIFRNG----DSLAELRAIAAESGATSIYWNRRYEGHLREQDAQIKRELFED 121 Query: 130 RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKAL----IQNLVQADLRSLPVPAIRLT 185 + KS++ S+L P +I N + YKVYTP+ KA+ + V DL ++ P Sbjct: 122 GLEVKSYNSSLLNEPHTIGNKEGRPYKVYTPYFKAVKDRPVARPVVPDLTAMAFPDELPQ 181 Query: 186 GPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245 + + ++ + + E+ A + +F +V Y RD P + GTS L Sbjct: 182 SLALDALDLLPSNQWYRKFESKWEPSEEGAKQQVDEFLSLRVERYDTDRDRPDLDGTSAL 241 Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305 SPYL G + PRQ + L E DL + G F +L E+ WREF +++ +P Sbjct: 242 SPYLHFGQIGPRQLVHEL-ELRADL---EEQGPFIFLKEIYWREFAYNVLYHFPRTAE-S 296 Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365 P P E W +++ LL WK+G TG+PI+DA MRQL GWMHNR+RMI +S LVK L Sbjct: 297 PLQPQYESFPWEQNADLLSLWKRGKTGYPIVDAGMRQLWQTGWMHNRVRMIVSSLLVKHL 356 Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425 L DW+ G +F L+D DLASN GWQW+ G D+ PYFRIFNP IQGK+FDP+ ++ Sbjct: 357 LQDWKEGARWFWDTLVDADLASNTLGWQWSGGCGADAAPYFRIFNPMIQGKKFDPEALYV 416 Query: 426 RHWLPELNNVPTQYIHAPHSWLDKN------DLSLNYPLPIVDHKKACHHTLNQY 474 R ++PEL+ +P +YIH P D+ +L ++YP P+V+H L+ Y Sbjct: 417 RRFVPELSRLPNKYIHEPWEAPDEVLAEAGIELGVDYPYPVVEHAVGRQRALSAY 471 >gi|312114970|ref|YP_004012566.1| DNA photolyase FAD-binding protein [Rhodomicrobium vannielii ATCC 17100] gi|311220099|gb|ADP71467.1| DNA photolyase FAD-binding protein [Rhodomicrobium vannielii ATCC 17100] Length = 484 Score = 273 bits (698), Expect = 5e-71, Method: Compositional matrix adjust. Identities = 177/503 (35%), Positives = 260/503 (51%), Gaps = 42/503 (8%) Query: 1 MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFI---ATPEQWRQHGISARQ 57 M ++ + LV R DLR+ D+ AL AA + A V+ V+I TP +WR G S Sbjct: 1 MPLSSRAAPALVLFRRDLRLADHPALSAAA-ETGAPVLPVYILDDETPGRWRMGGAS--- 56 Query: 58 SHFIYASLLQVQKSLSQKG--IVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEIN 115 ++Y SL + L +G +V ++ + L + + + R YE Sbjct: 57 RWWLYQSLRSLGADLEARGSRLVLRHGETKRV------LGELIEETGARSVLFTRGYEPY 110 Query: 116 EVRRDKLLEKRLQHR-VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADL 174 + + L+ L+ R V + F +L+ P SI N A + ++V+TPF +AL Q A Sbjct: 111 QRALEGRLKPSLEARGVSLRRFGGQILVEPESIANLAGEPFRVFTPFFRALSQRGAPAT- 169 Query: 175 RSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFP-----------IGEQNALHILRKFC 223 P+PA + P + PR A++P P GE A L F Sbjct: 170 ---PLPAPQKL--AAPDSWPRSDALASLALEPTRPDWAGGIRAAWRPGETAARERLTAFI 224 Query: 224 KEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLN 283 + + Y +RD P I GTS+LSP+L+ G + PRQ W+ ++ + A+ L Sbjct: 225 EAALPSYRTRRDEPGIDGTSRLSPHLAFGEIGPRQIWHAVQAAAEAAGDHAAADAY--LR 282 Query: 284 ELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQL 343 E+ WREF HL+ +P + PF P W D+ L+AW++G TG+PI+DA MRQL Sbjct: 283 EVGWREFSYHLLFHFPHLPEA-PFRPEFTAFPWRDDADALEAWQRGRTGYPIVDAGMRQL 341 Query: 344 NTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSV 403 GWMHNR+RMI ASFL+K LL W+ G ++F L+D DLA+N WQW A +G D+ Sbjct: 342 WQTGWMHNRVRMIVASFLIKHLLSPWQTGADWFWDTLVDADLANNAASWQWVAGSGADAA 401 Query: 404 PYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAP----HSWLDKNDLSLN--YP 457 PYFRIFNP +QG++FDP+G ++R ++PEL +P IH P + L ++L +P Sbjct: 402 PYFRIFNPVLQGEKFDPRGDYVRAFVPELAKLPASLIHKPWTASAAALRDAGVTLGETWP 461 Query: 458 LPIVDHKKACHHTLNQYYAAKKQ 480 PIVDH A L + A KK+ Sbjct: 462 HPIVDHAAARARALTAFAAVKKK 484 >gi|209559671|ref|YP_002286143.1| Putative deoxyribodipyrimidine photolyase [Streptococcus pyogenes NZ131] gi|209540872|gb|ACI61448.1| Putative deoxyribodipyrimidine photolyase [Streptococcus pyogenes NZ131] Length = 469 Score = 273 bits (697), Expect = 7e-71, Method: Compositional matrix adjust. Identities = 183/492 (37%), Positives = 257/492 (52%), Gaps = 48/492 (9%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 V ++W R DLRI D KAL A S + + VF EQ S QS FI S+L Sbjct: 2 VSVMWFRRDLRIDDQKALAHAIA-SQSPTLCVFQFNKEQLNLLH-SRNQSSFI-TSVLAF 58 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLD-SYCLQQRVTKL-------FYNRQYEINEVRRD 120 +K L +C D + + D C +Q +T+L F + +R Sbjct: 59 RKLL----------KCEGIDLYLMYGDLMTCFEQLLTQLKDWTDVYFNYDESGYGRLRDQ 108 Query: 121 KLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVP 180 K + ++ + ++ D L I+N + Q YKV+TP+ + + QN + + + Sbjct: 109 KAAQFFKKNGIAVHTYQDHYLHGSQEIINQSGQPYKVFTPYYR-IWQNYPKETPIKVELS 167 Query: 181 AIRLTGPVTPSNIPR----FFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDI 236 R TP ++ R F D +Q + +Q L +F ++++ Y RD Sbjct: 168 QGRWLNLETPDDVLRTVESFKDEKYQDVATFDEASKQ-----LNRFIQDQLAAYHANRDF 222 Query: 237 PAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKS-GAFSWLNELIWREFYRHLM 295 PA GTS+LSP+L IG + R ++ +++ P S G ++L EL WR+FY + Sbjct: 223 PAQLGTSRLSPFLRIGAIGIRTVYHAVRQ-------APNSLGQATFLKELAWRDFYNMVY 275 Query: 296 AFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRM 355 YP +P +IEW + Q WK+G TG+PI+DAAM QL GWMHNRLRM Sbjct: 276 VAYPDQ-KTQPIQKAFSQIEWVNNPDWFQLWKEGKTGYPIVDAAMLQLQKTGWMHNRLRM 334 Query: 356 ITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQG 415 I ASFL KDLL D R+GE+YF QL+D D ASN GGWQWAASTG D+VPYFRIFNP QG Sbjct: 335 IVASFLTKDLLCDGRLGEQYFQQQLIDYDAASNIGGWQWAASTGTDAVPYFRIFNPVTQG 394 Query: 416 KRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKN-------DLSLNYPLPIVDHKKACH 468 KRFDP+G FI+ +LP+L +VP Y+ P + KN + +Y PIVDH K Sbjct: 395 KRFDPKGEFIKAYLPQLEHVPENYLLEPGK-MPKNLQESVSCIIGTDYAQPIVDHAKQRE 453 Query: 469 HTLNQYYAAKKQ 480 + +Y AK++ Sbjct: 454 QAIAKYEWAKEK 465 >gi|207728124|ref|YP_002256518.1| deoxyribodipyrimidine photolyase, class 1 protein [Ralstonia solanacearum MolK2] gi|206591369|emb|CAQ56981.1| deoxyribodipyrimidine photolyase, class 1 protein [Ralstonia solanacearum MolK2] Length = 522 Score = 272 bits (696), Expect = 7e-71, Method: Compositional matrix adjust. Identities = 186/500 (37%), Positives = 253/500 (50%), Gaps = 49/500 (9%) Query: 11 LVWLRNDLRITDNKAL-YAACHNSDAKVIAVF---IATPEQWRQHGISA-RQSHFIYASL 65 LVW R DLR D+ AL YA H + VF I P R G+ A R+ FI A++ Sbjct: 28 LVWFRRDLRHIDHAALHYALRHCREVFCAFVFDRGILDPLLAR--GLRADRRVEFIRAAV 85 Query: 66 LQVQKSLSQKG---IVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKL 122 ++ +L + G IV D + + S Q V +F N E + RD Sbjct: 86 EALRGALREAGGELIVLH-------DHAHHAIPSLAQQLGVEAVFANHDEEPAALARDAA 138 Query: 123 LEKRLQHRVICKSFD--DSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPV- 179 + L R C FD D V+ +LN + Y V+TP++ A + + DLR+ P+ Sbjct: 139 VRDALA-RQPCAWFDFKDQVIFERAEVLNGQGKPYGVFTPYKNAWLAAVSPFDLRAYPIE 197 Query: 180 PAIRLTG-------PVTPS-NIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYV 231 P + P TPS F AI P G A +L F Y+ Sbjct: 198 PHLHALARPPQGLAPATPSLEAMGFARSNLSAI--ALPTGMSGAKALLDDFATRMDDYHA 255 Query: 232 EQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFY 291 +RD PA++G S LS +L G +S R L ++ GA +WL+ELIWR+FY Sbjct: 256 -RRDYPAVRGPSYLSTHLRFGTVSIRT----LAAHAHAAMLHGSRGAATWLSELIWRDFY 310 Query: 292 RHLMAFYPSVCMGKPFIPWTEKIEW---NKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGW 348 ++ P + G F P ++I W + AW+ TG+P++DAAM Q+ G+ Sbjct: 311 FMILHHRPDLADGASFRPEFDRIRWVEGDAGDVRFAAWRDARTGYPLVDAAMLQIRQSGY 370 Query: 349 MHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRI 408 MHNRLRM+ ASFL+KDL VDWR GE YF L D D A+NNGGWQWAAS+G D+ P+FRI Sbjct: 371 MHNRLRMVAASFLIKDLGVDWRRGEHYFADALNDFDFAANNGGWQWAASSGCDAQPWFRI 430 Query: 409 FNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND--------LSLNYPLPI 460 FNP Q ++FDPQG FIR +LP+L +P +Y+HAP W D L YP PI Sbjct: 431 FNPVTQSEKFDPQGHFIRKYLPQLAKLPDRYLHAP--WTAPADVLKTAGVALGETYPQPI 488 Query: 461 VDHKKACHHTLNQYYAAKKQ 480 V+H A TL +Y A+ + Sbjct: 489 VEHAAARAATLERYAPAQVE 508 >gi|160897024|ref|YP_001562606.1| deoxyribodipyrimidine photo-lyase [Delftia acidovorans SPH-1] gi|160362608|gb|ABX34221.1| Deoxyribodipyrimidine photo-lyase [Delftia acidovorans SPH-1] Length = 493 Score = 272 bits (696), Expect = 9e-71, Method: Compositional matrix adjust. Identities = 183/495 (36%), Positives = 250/495 (50%), Gaps = 30/495 (6%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 V LVWLR DLR+ D+ ALY A +V VFI + + R+ FI SL + Sbjct: 7 VGLVWLRRDLRLADHAALYHALRQCR-QVHCVFIFDDDILAPLPCADRRVEFICQSLSGL 65 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128 +L Q E + Q +F N E + + RD + + L Sbjct: 66 DDALRQASGRADTGLIVRRGQPAEQIPDLARQLGAQAVFCNWDDEPDALARDTRVRQALA 125 Query: 129 HR-VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVP------- 180 V SF D ++ +L A + V+TP++ A ++ + L + P Sbjct: 126 AEGVALHSFKDHMVFARDEVLTQAGAPFSVFTPYKNAWLRQITPFFLSAYPSERDLPERL 185 Query: 181 AIRLTGPVTPSNIPRFFDYPFQA--IDPM-FPIGEQNALHILRKFCKEKVYYYVEQRDIP 237 A R G P +P D F+A +D + P G A +L F ++ Y + RD P Sbjct: 186 APRPEGERRP--VPTAADLGFEAGTLDGLRLPTGCAGAEELLADFLP-RLPRYKQARDFP 242 Query: 238 AIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAF 297 A++G S LS +L G +S R+ RL E GA +WL+ELIWR+FY ++A Sbjct: 243 AVKGPSYLSVHLRFGTVSIRRL-ARLAWEQTQSQPHDAEGAATWLSELIWRDFYFQILAH 301 Query: 298 YPSVCMGKPFIPWTEKIEWNKDSH---LLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLR 354 +P V F P + I W+ L AW +G TG+P++DAAMRQLNT G+MHNRLR Sbjct: 302 HPHVVHAS-FKPAYDAIVWDTGPEADALYAAWCEGRTGYPLVDAAMRQLNTTGYMHNRLR 360 Query: 355 MITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQ 414 M+ ASFLVKDL +DWR GE +F QL D DLA+NNGGWQWAASTG D+ P+FRIFNP Q Sbjct: 361 MVAASFLVKDLGIDWRRGEAWFARQLNDFDLAANNGGWQWAASTGCDAQPWFRIFNPVTQ 420 Query: 415 GKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKN--------DLSLNYPLPIVDHKKA 466 ++FD FI ++PEL +P HAP W + L +YP P+VDH A Sbjct: 421 SQKFDADARFIERYVPELARLPAALRHAP--WQARPLELAEAGVVLGTDYPHPVVDHAAA 478 Query: 467 CHHTLNQYYAAKKQS 481 TL +Y K+ S Sbjct: 479 RERTLARYGVVKQAS 493 >gi|89900170|ref|YP_522641.1| deoxyribodipyrimidine photolyase [Rhodoferax ferrireducens T118] gi|89344907|gb|ABD69110.1| Deoxyribodipyrimidine photo-lyase type I [Rhodoferax ferrireducens T118] Length = 492 Score = 271 bits (694), Expect = 1e-70, Method: Compositional matrix adjust. Identities = 175/492 (35%), Positives = 251/492 (51%), Gaps = 36/492 (7%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 L+W R DLR+ DN AL A ++ VF+ + + R+ FI ASL ++ Sbjct: 9 LMWFRRDLRVIDNAALCLALAACR-QLHCVFVFDRDILDTLPRADRRVEFIRASLCELDV 67 Query: 71 SLSQ------KGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLE 124 +L Q G++ ++ S E + + +V +F YE + RD + Sbjct: 68 ALGQLSGKAGVGLIVRHAVAS------EEIVTLAKTLQVQAVFAAHDYEPQALARDARVR 121 Query: 125 KRLQH-RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLR---SLPVP 180 L H ++ + D V+ IL+ Y V+TP++ + + LR + PV Sbjct: 122 GALAHVGIVLHTCKDHVIFENREILSKTGTPYGVFTPYKNTWLATVTPQHLRHHDATPVA 181 Query: 181 AIRLTGPVTPSN-IPRFFDYPFQAIDP---MFPIGEQNALHILRKFCKEKVYYYVEQRDI 236 + P +P F+ + P G + F E++ Y E RD+ Sbjct: 182 QALVPRPEGLQQPVPTLAAIGFEKTNLSQLKIPTGASGGARLFEDFF-ERMDSYHETRDL 240 Query: 237 PAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMA 296 PA++G S L +L G +S RQ L + I+ GA WL ELIWR+FY ++A Sbjct: 241 PAVKGPSYLGVHLRFGTVSVRQ----LAATALQRQIQGSRGAAVWLGELIWRDFYFSILA 296 Query: 297 FYPSVCMGKPFIPWTEKIEWNKDSH---LLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRL 353 +P V G F P + I+W H L QAW +G TG+P++DAAM Q+N G+MHNRL Sbjct: 297 NFPHVAQGA-FKPEYDAIKWEHGKHADSLFQAWCEGRTGYPLVDAAMAQINQTGYMHNRL 355 Query: 354 RMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTI 413 RM+ SFLVKDL +DWR GE+YF L D DLA+NNGGWQW +S+G D+ PYFRIFNP Sbjct: 356 RMVAGSFLVKDLGIDWRWGEKYFARHLNDFDLAANNGGWQWVSSSGCDAQPYFRIFNPVT 415 Query: 414 QGKRFDPQGTFIRHWLPELNNVPTQYIHAPHS------WLDKNDLSLNYPLPIVDHKKAC 467 Q ++FD G FIR +LP+L +P++ IHAP + ++ L NYP PIV H A Sbjct: 416 QSEKFDADGKFIRRYLPQLARLPSKVIHAPWTAQALELQMEGVTLGQNYPAPIVAHAAAR 475 Query: 468 HHTLNQYYAAKK 479 TL +Y KK Sbjct: 476 ALTLQRYAVVKK 487 >gi|307151428|ref|YP_003886812.1| deoxyribodipyrimidine photo-lyase [Cyanothece sp. PCC 7822] gi|306981656|gb|ADN13537.1| Deoxyribodipyrimidine photo-lyase [Cyanothece sp. PCC 7822] Length = 476 Score = 271 bits (694), Expect = 1e-70, Method: Compositional matrix adjust. Identities = 169/470 (35%), Positives = 248/470 (52%), Gaps = 29/470 (6%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 L W R DLRI+DN L AA S K++ +F P + ++ + ++ L ++Q+ Sbjct: 6 LFWHRRDLRISDNIGLSAARQKS-PKIVGIFCLDPNILNKDDVAPARVTYLIGCLQELQQ 64 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130 Q G + + + + + + +F+N E RD+ + LQ + Sbjct: 65 QYQQAGSQLLILR----GEPSQAIPRLAATLKASAVFWNLDVEPYAKNRDEQVINVLQEK 120 Query: 131 VICK-SFDDSVLLPPGSILNHALQMYKVYTPF--------RKALIQNLVQADLRSLPVPA 181 I + +F D +L PG ++ + YKV+TPF +++ +Q L L+ L Sbjct: 121 GIARENFWDQLLHAPGQLVTQSKDYYKVFTPFWRNWSKLKKQSPLQKL--EGLKGLTEEE 178 Query: 182 IRLTGPVTPSNIPRFFDYPFQAIDPMF-PIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ 240 + LT ++P + +P+ GE A L +FC + Y EQR+ PA+ Sbjct: 179 LTLTINAGVIDLPTAKKLGYAWENPLLLDPGETAAKKRLEEFCSSAINEYQEQRNFPAVD 238 Query: 241 GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLI-KPKSGAFSWLNELIWREFYRHLMAFYP 299 GTS+LS L G + R W E + + + + +W EL WREFY+H M F+P Sbjct: 239 GTSRLSAALKFGAIGIRTVWKATLEVYENSRSDEARKSIETWQQELAWREFYQHCMYFFP 298 Query: 300 SVCMG---KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMI 356 + G K F W + QAW +G TG+PI+DAAMRQLN WMHNR RMI Sbjct: 299 ELAEGSYRKDF----RSFPWQNNEDYFQAWCEGKTGYPIVDAAMRQLNETAWMHNRCRMI 354 Query: 357 TASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGK 416 ASFL KDL+++W+ GE+YFM +L DGDL++NNGGWQW+AS+G D P RIFNP Q + Sbjct: 355 VASFLTKDLIINWQWGEKYFMQKLYDGDLSANNGGWQWSASSGMDPKP-LRIFNPASQAQ 413 Query: 417 RFDPQGTFIRHWLPELNNVPTQY-IHAPHSWLDKNDLSLNYPLPIVDHKK 465 +FDP+G +IR WLPEL +V T++ I L++ YP PIVDHKK Sbjct: 414 KFDPEGEYIRQWLPELRSVDTEFLISGKIPSLER--YQCGYPEPIVDHKK 461 >gi|296136973|ref|YP_003644215.1| DNA photolyase FAD-binding protein [Thiomonas intermedia K12] gi|295797095|gb|ADG31885.1| DNA photolyase FAD-binding protein [Thiomonas intermedia K12] Length = 497 Score = 271 bits (693), Expect = 2e-70, Method: Compositional matrix adjust. Identities = 175/500 (35%), Positives = 253/500 (50%), Gaps = 37/500 (7%) Query: 3 ATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFI---ATPEQWRQHGISA-RQS 58 A + + LVWLR DLR+ DN AL+AA D KV F+ + Q G+ A R+ Sbjct: 13 AVEKLPLGLVWLRRDLRLHDNAALHAALRACD-KVALAFVFDRDILDPLLQRGLQADRRV 71 Query: 59 HFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVR 118 FI A++ ++ +L ++G S + E + + +F R E + Sbjct: 72 EFILAAVAEIDAALRERGAALIVRHAS----AREAIPVLAAELGAQAVFCGRDDEPAALA 127 Query: 119 RDKLLEKRL-QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALI-------QNLV 170 RD +E+ L Q S + ++ +L + Y V+TP+R A + Q V Sbjct: 128 RDAAVERALRQDGRALHSVKEHMIFERDEVLTAQDKPYSVFTPYRTAWLARYAAQPQQPV 187 Query: 171 QADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYY 230 + + S + A+ + P P+G A ++ F + ++ Y Sbjct: 188 DSAVTSARLAALPAALQQPLPTLSELGFAPSNLHALKLPLGASGASALVDDFSR-RIDDY 246 Query: 231 VEQRDIPAIQGTSQLSPYLSIGVLSPRQ----CWNRLKEEFVDLLIKPKSGAFSWLNELI 286 + RD PA +G S LS +L G +S R+ W R + GA WL+EL+ Sbjct: 247 DQARDYPARKGPSYLSVHLRFGTVSVRELVAMAWARQQ--------AGSEGARVWLSELV 298 Query: 287 WREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTI 346 WR+FY ++ +P V + F P ++I+W D AW +G TG+P++DAAMRQ+N Sbjct: 299 WRDFYFQILFHHPHV-VNAAFKPVYDRIQWRNDPAQFAAWCEGRTGYPLVDAAMRQINQT 357 Query: 347 GWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYF 406 G+MHNRLRM+ ASFL KDL +DWR GE YF L D DLA+NNGGWQWAAS+G D+ PYF Sbjct: 358 GYMHNRLRMVVASFLTKDLGIDWRWGERYFADHLNDFDLAANNGGWQWAASSGCDAQPYF 417 Query: 407 RIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIH----APHSWLDKNDLSLN--YPLPI 460 RIFNP Q ++FD G FIR ++PEL + ++ IH AP + L + L YP PI Sbjct: 418 RIFNPVAQSEKFDAGGDFIRRYVPELAQLASKDIHAPWKAPAALLQAAGVRLGSTYPAPI 477 Query: 461 VDHKKACHHTLNQYYAAKKQ 480 V H A TL +Y K Q Sbjct: 478 VRHDLARAETLERYAVVKAQ 497 >gi|154250969|ref|YP_001411793.1| deoxyribodipyrimidine photo-lyase [Parvibaculum lavamentivorans DS-1] gi|154154919|gb|ABS62136.1| Deoxyribodipyrimidine photo-lyase [Parvibaculum lavamentivorans DS-1] Length = 475 Score = 271 bits (693), Expect = 2e-70, Method: Compositional matrix adjust. Identities = 170/494 (34%), Positives = 259/494 (52%), Gaps = 38/494 (7%) Query: 6 AMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASL 65 + S ++W R DLR+ + A + VI +FI P + G ++R +++ SL Sbjct: 2 SASPAILWFRRDLRL--DANPALAAAMARGPVIPLFILDPAD--RPGAASRW--WLHGSL 55 Query: 66 LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125 + +SL++ G + S E L + + +F+NR YE + + RDK L+ Sbjct: 56 EALGESLARLGAPLILRRGS----PSEILPALTAETDARAIFWNRLYEPHLIGRDKALKS 111 Query: 126 RLQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL 184 L + I +SF+ S+L P + + YKV+TPF ++L Q A P PA + Sbjct: 112 ALTAQGIEVESFNGSLLAEPWQVRTQSGDPYKVFTPFWRSLAQMPFPA-----PHPAPKK 166 Query: 185 TGPVTPSNIPRFFDYPFQAIDP--------MFPIGEQNALHILRKFCKEKVYYYVEQRDI 236 ++P + + P + GE+ A L F + + Y E RDI Sbjct: 167 CAGLSPLPSDDLASWSLRPSKPDWAGGLRATWQPGERAAQSRLAAFIDDAMVGYREARDI 226 Query: 237 PAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMA 296 PA +GTS+LSP+L G +SP + W+ ++ ++G ++L EL WR+F HL+ Sbjct: 227 PAAEGTSRLSPHLHWGEVSPHRIWSAVEAATAAHPSGAEAGR-AFLRELAWRDFAHHLLF 285 Query: 297 FYPSVCMGKPFIPWTEKIE---WNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRL 353 +P + W + + W +D+ AW +G TG+PI+DA MRQL GWMHNR+ Sbjct: 286 HWPDIAREN----WKSQFDAFPWKEDTAAFTAWTKGETGYPIVDAGMRQLWQTGWMHNRV 341 Query: 354 RMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTI 413 RMI ASFLVK L+VDWR G E+F + L+D DLA N WQW A +G D+ PYFRIFNP + Sbjct: 342 RMIAASFLVKHLMVDWRRGAEWFENTLVDADLAVNRASWQWVAGSGADAAPYFRIFNPVL 401 Query: 414 QGKRFDPQGTFIRHWLPELNNVPTQYIH----APHSWLDKNDLSLN--YPLPIVDHKKAC 467 QG++FD G ++R ++PEL + ++IH AP + L K ++L YP P+VDH A Sbjct: 402 QGEKFDGDGAYVRAFVPELAKLDARFIHKPWAAPDAELSKAGIALGRTYPKPLVDHGHAR 461 Query: 468 HHTLNQYYAAKKQS 481 L Y + +S Sbjct: 462 ARALAAYEQIRNES 475 >gi|88705106|ref|ZP_01102818.1| Deoxyribodipyrimidine photo-lyase [Congregibacter litoralis KT71] gi|88700801|gb|EAQ97908.1| Deoxyribodipyrimidine photo-lyase [Congregibacter litoralis KT71] Length = 482 Score = 271 bits (693), Expect = 2e-70, Method: Compositional matrix adjust. Identities = 166/482 (34%), Positives = 258/482 (53%), Gaps = 34/482 (7%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFI---ATPEQWRQHGISARQSHFIYASLLQ 67 ++W R DLR+ D AL AA + +V+ ++I +P W G S +++ SL Sbjct: 6 ILWFRQDLRLNDLPALQAASRDG-RRVLPLYIFDEDSPGDWVMGGAS---RWWLHHSLSA 61 Query: 68 VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127 + + + +G + + S E L C T ++ +R+YE +K+L + L Sbjct: 62 LARDIEDQGGKLIFRRGK----SREVLGDICKSTDATAVYCSRRYEPWASEEEKMLHEDL 117 Query: 128 QHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 + I K + ++L PG+++ + YKV+TPF +A ++ L +A+ +PVP + + Sbjct: 118 GNSDIDFKRYGGTLLHEPGNVMTQSGGPYKVFTPFWRACLE-LDRAE--PVPVPDVTWS- 173 Query: 187 PVTPSNIPRFFDYPFQAIDPMFPI--------GEQNALHILRKFCKEKVYYYVEQRDIPA 238 T + D+ + P + GE A L F +E V Y ++RD PA Sbjct: 174 --TFTKSDALDDWQLRPTSPNWAASWEEYWTPGEDGAQQRLHDFLEESVSRYADERDFPA 231 Query: 239 IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFY 298 + +S+LSP+L G LSPRQ W +++ ++ K+ + E+ WREF HL+ F+ Sbjct: 232 EEVSSRLSPHLHHGELSPRQVWAMCEQKKLETPASEKA-IKKFQAEIGWREFSYHLLHFF 290 Query: 299 PSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITA 358 P + K F W D L+ W+QG TG+PI+DA MR+L G MHNR+RM+ A Sbjct: 291 PEIPE-KAFKENFADFPWQPDKTRLERWQQGQTGYPIVDAGMRELWATGTMHNRIRMVVA 349 Query: 359 SFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRF 418 SFL K LL WR GE++F L+D D+ASN WQW A +G D+ PYFRIFNP QG++F Sbjct: 350 SFLCKHLLQHWRSGEDWFWDTLVDADMASNGCSWQWVAGSGADAAPYFRIFNPITQGEKF 409 Query: 419 DPQGTFIRHWLPELNNVPTQYIHAP----HSWLDKNDLSL--NYPLPIVDHKKACHHTLN 472 D G ++R W+PE+ +P +Y+H P L++ + L +YP PIVDHK+A L+ Sbjct: 410 DKHGDYVRQWVPEIARLPNKYLHKPWEASKEALEEAGIKLGSDYPEPIVDHKEARQAALD 469 Query: 473 QY 474 Y Sbjct: 470 AY 471 >gi|311748125|ref|ZP_07721910.1| deoxyribodipyrimidine photolyase [Algoriphagus sp. PR1] gi|126576610|gb|EAZ80858.1| deoxyribodipyrimidine photolyase [Algoriphagus sp. PR1] Length = 432 Score = 271 bits (693), Expect = 2e-70, Method: Compositional matrix adjust. Identities = 163/472 (34%), Positives = 241/472 (51%), Gaps = 47/472 (9%) Query: 8 SVHLVWLRNDLRITDNKALYAACH-NSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 + + W R DLR+ DN LY A +D + +F T + AR S FI+ + Sbjct: 3 KLSVFWFRRDLRLEDNTGLYYALQQETDVLPLFIFDRTILDDLEDKTDARVS-FIHDQIQ 61 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 +++ L +KG + + E + + +Q ++ NR YE +RD+ +EK Sbjct: 62 NLKEELEKKGSTLLVKYGTPEEVYQELIKKFEIQA----IYTNRDYEPYAKKRDRAIEKL 117 Query: 127 LQHRVIC-KSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185 + + I +F D V+ PG ILN + + YKV+TPF + + + ++ +L + Sbjct: 118 AEEKGISFLTFKDQVIFEPGEILNGSGEFYKVFTPFSRVWLSKFEETNIEALSYFHWKNL 177 Query: 186 GPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245 P + + F+ + +E + YY + R+ PA GTS+L Sbjct: 178 YQTKPEPLISLKEMGFE---------RSSISIPSSNPNEEIIKYYDKTRNFPAENGTSRL 228 Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305 +L G +S RQ L +K S ++LNELIWREFY ++ + P V + K Sbjct: 229 GIHLRFGTISIRQ-----------LALKAASLNETYLNELIWREFYMMILDYNPQV-VDK 276 Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365 F P ++I W + +AW +G TG+PI+DA MR+LN G+MHNR+RMI ASFL K L Sbjct: 277 AFKPAYDQIPWRNNEEEFKAWCEGKTGYPIVDAGMRELNQTGYMHNRVRMIVASFLTKHL 336 Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425 L+DWR GE YF +LLD DLA+NNGGWQWAA TG D+ PYFR+FNP+ Q ++FD +I Sbjct: 337 LIDWRWGEAYFAKKLLDFDLAANNGGWQWAAGTGTDAQPYFRVFNPSSQTEKFDKDLKYI 396 Query: 426 RHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477 + W+PE + YP PIVDHK A L+ Y A Sbjct: 397 KKWIPEFG-------------------TEKYPKPIVDHKFARQRALDTYKKA 429 >gi|113474888|ref|YP_720949.1| deoxyribodipyrimidine photo-lyase type I [Trichodesmium erythraeum IMS101] gi|110165936|gb|ABG50476.1| Deoxyribodipyrimidine photo-lyase type I [Trichodesmium erythraeum IMS101] Length = 474 Score = 271 bits (693), Expect = 2e-70, Method: Compositional matrix adjust. Identities = 166/466 (35%), Positives = 241/466 (51%), Gaps = 22/466 (4%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 L W R DLRI+DN L A V+ +F ++ I++ + ++ L +QK Sbjct: 6 LFWHRRDLRISDNVGLTQASQEGQT-VVGIFCLDENILKRDDIASARVTYMIGCLQHLQK 64 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130 Q G IE + +++N E +RD+ +++ L+ Sbjct: 65 RYKQIGSQLLIMS----GKPIEAIPKLATFLEAKAVYWNLDVEPYSRKRDRQVKENLEAA 120 Query: 131 VI-CKSFDDSVLLPPGSILNHALQMYKVYTPF-----RKALIQNLVQADLRSLPVPAIRL 184 I K+F + +L P I + Y VYTPF K L L+ L ++ Sbjct: 121 NIQVKTFWEQLLHSPEEIFTSTKKPYSVYTPFWKNWQGKKKSNPLNTPVLKGLTEDQLQY 180 Query: 185 TGPVTPSNIPRFFDYPFQAIDPM-FPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS 243 T + ++P F + + GE AL L KF + Y EQR+ P++ GTS Sbjct: 181 TKKIGVIDLPTAKQLGFNWDNKLILEPGETAALEKLEKFSNGAISSYQEQRNFPSLDGTS 240 Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAF----SWLNELIWREFYRHLMAFYP 299 QLS L G + R W + +E + S F +W E+ WREFY+++M YP Sbjct: 241 QLSVALKFGTIGIRTVWAKTQELIENCY---SSEVFENIETWQKEIAWREFYQYVMYHYP 297 Query: 300 SVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITAS 359 + G P+ + W + QAW +G TG+PI+DAAMRQLN GWMHNR RMI AS Sbjct: 298 ELETG-PYREHWKNFPWKNNKAHFQAWCEGNTGYPIVDAAMRQLNETGWMHNRCRMIVAS 356 Query: 360 FLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFD 419 FL KDL+++W+ GE+YFM L+DGDL +NNGGWQW+AS+G D P RIFNP Q +++D Sbjct: 357 FLTKDLIINWQWGEKYFMQNLIDGDLCANNGGWQWSASSGMDPKP-LRIFNPVSQTQKYD 415 Query: 420 PQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKK 465 P+G +IR W+ EL +V TQY+ ++ + ++ YPLPIVDHKK Sbjct: 416 PEGEYIRQWVCELRSVDTQYLVTGKIPAEERE-AIGYPLPIVDHKK 460 >gi|302383034|ref|YP_003818857.1| deoxyribodipyrimidine photo-lyase [Brevundimonas subvibrioides ATCC 15264] gi|302193662|gb|ADL01234.1| Deoxyribodipyrimidine photo-lyase [Brevundimonas subvibrioides ATCC 15264] Length = 490 Score = 271 bits (692), Expect = 2e-70, Method: Compositional matrix adjust. Identities = 175/487 (35%), Positives = 242/487 (49%), Gaps = 49/487 (10%) Query: 2 KATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSH-- 59 KA + ++W R DLR+ DN AL A H + V+ V+I G + R + Sbjct: 4 KAQDGPAPVILWFRRDLRLADNPALNKA-HATGRPVVPVYI------HDEGTAVRPAGAA 56 Query: 60 ---FIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINE 116 ++ SL + SL+++G + DS L Q +F NR +E Sbjct: 57 SLWWLDKSLRALAGSLAERGATLILRRG----DSETELRRLIDQTGADTVFLNRLFEPEA 112 Query: 117 VRRDKLLEKRLQ-HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLR 175 RD + L+ V C+ + S+L PGS+LN + YKV+TPF KAL R Sbjct: 113 WTRDADIAHGLKTDGVECRGSNGSLLALPGSLLNGSGGPYKVFTPFMKAL---------R 163 Query: 176 SLPVPAIRLTGPVTPSNIPRFF--DYPFQAIDPMFP---------IGEQNALHILRKFCK 224 + P TGP P D + P P GE A L +F Sbjct: 164 AQAEPPAHTTGPRQLGAAPGLESDDLDAWGLHPTRPDWSKGFDWTPGEDGATAALHRFVS 223 Query: 225 EKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNE 284 + Y RD PA TS+LSP+L G +SP + W ++ D A ++ E Sbjct: 224 GGLADYSNGRDRPAEPATSRLSPHLHFGEISPWRAWIAARDA-ADGGKVTSGEADKFIAE 282 Query: 285 LIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLN 344 LIWR+F HL+ +P++ K F P + + W D AW +G TG+PI+DA MR+L Sbjct: 283 LIWRDFSAHLLHHFPTLP-DKAFRPEYDAMPWRDDEPGFLAWTRGMTGYPIVDAGMRELW 341 Query: 345 TIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVP 404 G MHNR+RMI ASFL+KDLL+DWR GE +F L+D DLASN+ WQW A +G D+ P Sbjct: 342 ATGVMHNRVRMIVASFLIKDLLIDWRRGEAWFWDTLVDADLASNSQNWQWVAGSGADASP 401 Query: 405 YFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND--------LSLNY 456 YFRIFNP QG++FD + +++ W+PEL VP ++IHAP W + L Y Sbjct: 402 YFRIFNPVTQGQKFDAEARYVKRWIPELAPVPARWIHAP--WNAPPEILRDCGIRLGTTY 459 Query: 457 PLPIVDH 463 P PIVDH Sbjct: 460 PRPIVDH 466 >gi|270159915|ref|ZP_06188571.1| deoxyribodipyrimidine photo-lyase [Legionella longbeachae D-4968] gi|289165333|ref|YP_003455471.1| deoxyribodipyrimidine photolyase phrB [Legionella longbeachae NSW150] gi|269988254|gb|EEZ94509.1| deoxyribodipyrimidine photo-lyase [Legionella longbeachae D-4968] gi|288858506|emb|CBJ12387.1| putative deoxyribodipyrimidine photolyase phrB [Legionella longbeachae NSW150] Length = 472 Score = 271 bits (692), Expect = 2e-70, Method: Compositional matrix adjust. Identities = 172/486 (35%), Positives = 261/486 (53%), Gaps = 25/486 (5%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M+ LVW R DLR+ DN A AC + VI ++I + + Q+ ++Y SL Sbjct: 1 MTTALVWFRFDLRLNDNPAFIEACSHHQF-VIPLYIYDE---KNSVLGGAQAWWLYHSLT 56 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 + SL+Q+G+ + D +E + ++ +++NR YE + RDK ++ Sbjct: 57 SLSNSLAQRGLNLILRK----GDPLEIILDLAKTVSISSVYWNRCYEPVAISRDKGIKAT 112 Query: 127 LQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRK---ALIQNLVQADLRSLPVPAI 182 L R I S + S+L P +I N + +KV+TP+ K LI +L PV Sbjct: 113 LLERGIDVHSSNGSLLHEPWTIRNKSGDYFKVFTPYWKHCKQLINIQRPMNLEHRPVGVE 172 Query: 183 RLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGT 242 + + + ++ + + P GE A L++F + + Y RD P T Sbjct: 173 VQSELLNDWKLLPTINWAARFSEYWIP-GEGGAQQKLKEFIEHHLNGYKNNRDFPIKNAT 231 Query: 243 SQLSPYLSIGVLSPRQCWNRLKEEFVDLL-IKPK---SGAFSWLNELIWREFYRHLMAFY 298 S+LSP+L G +SP W L+ ++L + P + A +L+EL WREF +L+ + Sbjct: 232 SRLSPHLHFGEISP---WTILRA--IELAKLNPNCDLASAEHFLSELGWREFSVYLLYHF 286 Query: 299 PSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITA 358 P + + F + W+ D LL W++G TG+PIIDA MR+L G+MHNR+RMI A Sbjct: 287 PKLP-SENFRNEFDAFPWHNDEKLLSYWRRGLTGYPIIDAGMRELWATGYMHNRVRMIAA 345 Query: 359 SFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRF 418 SFL K LL+DWR+G ++F+ L+D DLA+N+ WQW A G D+ PYFRIFNP +Q ++F Sbjct: 346 SFLTKGLLIDWRLGADWFLDTLVDADLANNSASWQWVAGCGADAAPYFRIFNPVLQSQKF 405 Query: 419 DPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLN--YPLPIVDHKKACHHTLNQYYA 476 D G++IRHW+PEL+ + +Q IHAP + LN YP PI+DH +A LN Y Sbjct: 406 DADGSYIRHWVPELSQLDSQSIHAPWESVGSERFYLNTKYPKPIIDHHEARTRALNYYNQ 465 Query: 477 AKKQSL 482 K+ L Sbjct: 466 LKRNDL 471 >gi|75763261|ref|ZP_00743014.1| Deoxyribodipyrimidine photolyase [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|74489251|gb|EAO52714.1| Deoxyribodipyrimidine photolyase [Bacillus thuringiensis serovar israelensis ATCC 35646] Length = 478 Score = 271 bits (692), Expect = 2e-70, Method: Compositional matrix adjust. Identities = 168/485 (34%), Positives = 262/485 (54%), Gaps = 32/485 (6%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 +V + D R+ DN AL+ A + + V+ V+I Q I + +++ +++ VQK Sbjct: 8 IVMFQKDFRLYDNPALFEAVQSGE--VLPVYI----QDETFSIGSAAKWWLHHAIIDVQK 61 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130 L G F ++ + ++ Q +T +++N Y+ + ++ ++ ++ L+ + Sbjct: 62 QLKALGSTFIIRNGKTQEEILSLIE----QLDITAVYWNICYDPDRLQSNQKMKMMLEDK 117 Query: 131 -VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIR----LT 185 +ICK F+ +LL P I YKV+TPF A + ++ + V +I+ L Sbjct: 118 GIICKEFNSHLLLEPWIIKKKDNTEYKVFTPFYNAFQKQVIPKPISK--VQSIKWGSSLP 175 Query: 186 GPVTPSNIPRFFDYPFQA-IDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244 ++ S + P+ + I+ ++ E+ A +KF K+ Y E RD P S Sbjct: 176 ASLSVSELHLLPTIPWTSHIESIWEPTEEGAYKTFKKFFSSKLASYSEGRDFPNQNAHSM 235 Query: 245 LSPYLSIGVLSPRQCW----NRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPS 300 L+PYLS G +S + + N+ E L K + S++ +LIWREF +L+ YP Sbjct: 236 LAPYLSFGQISVKLMYHYLINKSTERQCSLFEKQVN---SFIRQLIWREFSYYLLYHYP- 291 Query: 301 VCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASF 360 + KP E WNK+ LL+ W++G TG+P IDA MR+L G+MHNR RM ASF Sbjct: 292 FTVYKPLNKNFEHFPWNKEEELLRVWQKGETGYPFIDAGMRELWQTGFMHNRTRMAVASF 351 Query: 361 LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDP 420 LVK LL+ W+ G ++FM LLD D+A+N GWQW A +G D+ PYFRIFNP QG++FD Sbjct: 352 LVKHLLIPWQEGAKWFMDTLLDADIANNTMGWQWVAGSGADASPYFRIFNPITQGEKFDK 411 Query: 421 QGTFIRHWLPELNNVPTQYIH----APHSWLDKNDLSLN--YPLPIVDHKKACHHTLNQY 474 G +IR W+PEL ++P +YIH AP L K ++ L YPLP+VDHK A L Y Sbjct: 412 NGEYIRKWVPELRDIPNKYIHKPWEAPEHILQKANIELGNTYPLPVVDHKAARERALCAY 471 Query: 475 YAAKK 479 + K+ Sbjct: 472 KSMKE 476 >gi|299747808|ref|XP_002911220.1| photolyase [Coprinopsis cinerea okayama7#130] gi|298407687|gb|EFI27726.1| photolyase [Coprinopsis cinerea okayama7#130] Length = 633 Score = 271 bits (692), Expect = 2e-70, Method: Compositional matrix adjust. Identities = 174/495 (35%), Positives = 258/495 (52%), Gaps = 77/495 (15%) Query: 11 LVWLR-NDLRITDNKALYAACHNSDAK---VIAVFIATPEQWRQHGISARQSHFIYASLL 66 + W+R DLR+ DN+AL A + + ++A+F+ +P+ + H S+R+ F +L+ Sbjct: 71 VFWMRMTDLRVKDNRALARASQQAASDGVPLVALFVVSPQDFVAHDRSSRKIDFTLRNLV 130 Query: 67 QVQKSLSQKGIVFQY----HQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKL 122 ++ L++ I + + + I +LDS +F N +YE++E+RRD Sbjct: 131 SIKCRLAELHIPLHVATLPRRKTVVSEVIIFLDSIGCNH----VFANIEYEVDELRRD-- 184 Query: 123 LEKRLQHRVICKS---FDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSL-- 177 +E + R I K + + ++ PG I + + Y VY+P+ + + ++V + L Sbjct: 185 IELCSKAREISKQVSLYHNKSVVEPGIIQSKGGKGYAVYSPYARQWV-SIVNSHLSDYLE 243 Query: 178 ----PVP---AIRLT---GPVTPSNIPRFFD-YPFQAIDPMF-----PIGEQNALHILRK 221 P P A+R GP+ S IP + + + D M P GE A IL++ Sbjct: 244 EAQDPAPNGAAVRSCPKIGPLFLSEIPSYVEGFVLDPEDSMIMRELWPEGEDAASQILQR 303 Query: 222 FCKEK------------------------VYYYVEQRDIPAIQGTSQLSPYLSIGVLSPR 257 F + K + Y RD TS+LSPYLS GV+S R Sbjct: 304 FLQTKARASQLEARGPLNEGVTYDVKHNRISKYHTDRDRADKDTTSRLSPYLSSGVISIR 363 Query: 258 QCWNRLKE--EFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIE 315 + + + L K+GA +++EL WR+FY ++A YP + MG+PF+ I Sbjct: 364 EVLRAILKVTGAQQLNTDSKTGAGRFISELAWRDFYTDVLASYPRISMGRPFLEKYSGII 423 Query: 316 WNK---------------DSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASF 360 W D+ L WK+G TG PI+DAAMR LN +GW+HNR+RMI A + Sbjct: 424 WENHQAPANSKDPAGTEMDAEALFRWKRGTTGVPIVDAAMRCLNKMGWVHNRMRMIVAMY 483 Query: 361 LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDP 420 L K L++DWR+GE YFM L+DGDLASNNGGWQW+ASTG D PYFRIFNP Q + DP Sbjct: 484 LTKHLMIDWRVGERYFMQTLVDGDLASNNGGWQWSASTGVDPCPYFRIFNPHTQSLKADP 543 Query: 421 QGTFIRHWLPELNNV 435 G FIRHW+PEL N+ Sbjct: 544 TGDFIRHWVPELRNL 558 >gi|323127700|gb|ADX24997.1| deoxyribodipyrimidine photolyase [Streptococcus dysgalactiae subsp. equisimilis ATCC 12394] Length = 474 Score = 270 bits (691), Expect = 3e-70, Method: Compositional matrix adjust. Identities = 175/497 (35%), Positives = 257/497 (51%), Gaps = 52/497 (10%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 V ++W R DLR+ D KAL A S + + VF EQ Q +R + AS+L Sbjct: 2 VSVMWFRRDLRVEDQKALARAI-ASQSPTLCVFQFNQEQLSQP--PSRNQSAVVASVLAF 58 Query: 69 QKSLSQKGI---VFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125 ++ L +KGI V + F+ + LD + T +++N RRD+ + Sbjct: 59 KEELKEKGIDLYVMHGDLITCFEQLAQQLDQW------TDVYFNYDESGFGRRRDQQAAQ 112 Query: 126 RLQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKA---------LIQNLVQADLR 175 + + I ++ D L I N + Q YK++TP+ + ++ +L + + Sbjct: 113 WFRAKKINIHAYQDHYLHGSQEIKNQSGQYYKIFTPYYRVWQCLPKETPVVVDLSRGNWL 172 Query: 176 SLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRD 235 SL +P L I D F + + + A L F ++ Y RD Sbjct: 173 SLKIPQATL------ELIETLKDTTFNDV-----MTVKEAKERLNHFVDNQLADYDTTRD 221 Query: 236 IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLM 295 P+ GTS LSPYL +G++S R + + + SG +L EL WR+FY + Sbjct: 222 FPSRCGTSFLSPYLRLGMVSIRTVYQAVSQ------APASSGQAVFLKELAWRDFYHMVY 275 Query: 296 AFYPS---VCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNR 352 P+ + + + F +EW+++ +AWK+G TG+PIIDAAM+QL GWMHNR Sbjct: 276 VANPNQKKLAIQEAF----RHLEWDENPAAFKAWKEGQTGYPIIDAAMKQLLATGWMHNR 331 Query: 353 LRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPT 412 LRM+ ASFL KDL +DWR+GE YF QL+D D ASN GGWQWAAS G D+VPYFRIFNP Sbjct: 332 LRMVVASFLTKDLQIDWRLGEAYFQEQLIDYDAASNIGGWQWAASVGTDAVPYFRIFNPV 391 Query: 413 IQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSL------NYPLPIVDHKKA 466 QGKRFDP G FIR +LP L +VP Y++ P + S+ +YP P+VDH + Sbjct: 392 TQGKRFDPDGEFIRSYLPSLVSVPQTYLYEPWKMPEALQESIACIIGEDYPHPLVDHAEQ 451 Query: 467 CHHTLNQYYAAKKQSLL 483 + +Y AK+++ + Sbjct: 452 RKRAIARYEWAKEKAQM 468 >gi|255037995|ref|YP_003088616.1| Deoxyribodipyrimidine photo-lyase [Dyadobacter fermentans DSM 18053] gi|254950751|gb|ACT95451.1| Deoxyribodipyrimidine photo-lyase [Dyadobacter fermentans DSM 18053] Length = 442 Score = 270 bits (691), Expect = 3e-70, Method: Compositional matrix adjust. Identities = 167/483 (34%), Positives = 255/483 (52%), Gaps = 53/483 (10%) Query: 1 MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWR--QHGISARQS 58 M T + + W R DLR+ DN LY A S V+ +FI + AR + Sbjct: 1 MGLKTKDKIAIFWFRRDLRLHDNAGLYYALR-SGYPVVPLFIFDRNILDDLEEKTDARLT 59 Query: 59 HFIYASLLQVQKSLSQK--GIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINE 116 FI+ ++ +++++L QK I+ +Y F + I W ++ + +++ N YE Sbjct: 60 -FIHKAVSEIRQALRQKEADIMVEY----GFPEKI-W-ENLVAGHDIAEVYTNTDYEPYA 112 Query: 117 VRRDKLLEKRLQHR-VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLR 175 RDK + + L+ + ++ K+ D V+ IL+ Y V+TP+ +A Q L L+ Sbjct: 113 TDRDKAIYRILKQKDIVFKTCKDQVIFEKQEILSGQGSPYTVFTPYSRAWKQKLNDFYLK 172 Query: 176 SLPVPA-IRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQR 234 S P R S +P + F+ D FP + + +L+ + KE R Sbjct: 173 SYPTKKYFRHFHQWHGSALPSLREMGFEKTDYDFPPADVDDT-LLKNYAKE--------R 223 Query: 235 DIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHL 294 D PA++ TS++ +L G +S R DL + ++ + ++LNELIWR+FY+ + Sbjct: 224 DFPAMEATSRIGVHLRFGTVSIR-----------DLARQARAHSDTFLNELIWRDFYQQI 272 Query: 295 MAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLR 354 ++ +P V G F + I+W D + W +G TG+P++DA MRQLN IG+MHNR+R Sbjct: 273 LSNFPHVGKGDAFRKAYDLIKWRYDKADFKKWCEGKTGYPLVDAGMRQLNAIGFMHNRVR 332 Query: 355 MITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQ 414 M+TASFL K LL+DWR+GE YF +LLD DLA+NNGGWQWAA +G D+ PYFRIFNP Q Sbjct: 333 MVTASFLSKHLLIDWRLGEAYFAQKLLDYDLAANNGGWQWAAGSGTDAAPYFRIFNPASQ 392 Query: 415 GKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQY 474 ++FDP+ +I+ W+PE + YP P+VDHK+A L Y Sbjct: 393 AEKFDPKMEYIKKWVPEFG-------------------TDEYPEPMVDHKEARERCLQAY 433 Query: 475 YAA 477 A Sbjct: 434 KTA 436 >gi|251782896|ref|YP_002997199.1| deoxyribodipyrimidine photolyase [Streptococcus dysgalactiae subsp. equisimilis GGS_124] gi|242391526|dbj|BAH81985.1| deoxyribodipyrimidine photolyase [Streptococcus dysgalactiae subsp. equisimilis GGS_124] Length = 474 Score = 270 bits (691), Expect = 3e-70, Method: Compositional matrix adjust. Identities = 175/497 (35%), Positives = 257/497 (51%), Gaps = 52/497 (10%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 V ++W R DLR+ D KAL A S + + VF EQ Q +R + AS+L Sbjct: 2 VSVMWFRRDLRVEDQKALARAI-ASQSPTLCVFQFNQEQLSQP--PSRNQSAVVASVLAF 58 Query: 69 QKSLSQKGI---VFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125 ++ L +KGI V + F+ + LD + T +++N RRD+ + Sbjct: 59 KEELKEKGIDLYVMHGDLITCFEQLAQQLDQW------TDVYFNYDESGFGRRRDQQAAQ 112 Query: 126 RLQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKA---------LIQNLVQADLR 175 + + I ++ D L I N + Q YK++TP+ + ++ +L + + Sbjct: 113 WFRAKKINIHAYQDHYLHGSQEIKNQSGQYYKIFTPYYRVWQCLPKETPVVVDLSRGNWL 172 Query: 176 SLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRD 235 SL +P L I D F + + + A L F ++ Y RD Sbjct: 173 SLKIPQATL------ELIETLKDTTFNDV-----MTVKEAKERLNHFVDNQLADYDTTRD 221 Query: 236 IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLM 295 P+ GTS LSPYL +G++S R + + + SG +L EL WR+FY + Sbjct: 222 FPSRCGTSFLSPYLRLGMVSIRTVYQAVSQ------APASSGQAVFLKELAWRDFYHMVY 275 Query: 296 AFYPS---VCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNR 352 P+ + + + F +EW+++ +AWK+G TG+PIIDAAM+QL GWMHNR Sbjct: 276 VANPNQKKLAIQEAF----RHLEWDENPAAFKAWKEGQTGYPIIDAAMKQLLATGWMHNR 331 Query: 353 LRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPT 412 LRM+ ASFL KDL +DWR+GE YF QL+D D ASN GGWQWAAS G D+VPYFRIFNP Sbjct: 332 LRMVVASFLTKDLQIDWRLGEAYFQEQLIDYDAASNIGGWQWAASVGTDAVPYFRIFNPV 391 Query: 413 IQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSL------NYPLPIVDHKKA 466 QGKRFDP G FIR +LP L +VP Y++ P + S+ +YP P+VDH + Sbjct: 392 TQGKRFDPDGEFIRSYLPSLVSVPQTYLYEPWKMPEALQESIACIIGKDYPHPLVDHAEQ 451 Query: 467 CHHTLNQYYAAKKQSLL 483 + +Y AK+++ + Sbjct: 452 RKRAIARYEWAKEKAQM 468 >gi|171779964|ref|ZP_02920868.1| hypothetical protein STRINF_01751 [Streptococcus infantarius subsp. infantarius ATCC BAA-102] gi|171281312|gb|EDT46747.1| hypothetical protein STRINF_01751 [Streptococcus infantarius subsp. infantarius ATCC BAA-102] Length = 471 Score = 270 bits (691), Expect = 3e-70, Method: Compositional matrix adjust. Identities = 177/486 (36%), Positives = 248/486 (51%), Gaps = 35/486 (7%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHN--SDAKVIAVFIATPEQWRQHGISARQSHFIYAS 64 M ++W+RND R DN AL A ++ + +I ++ PE + I + ++S Sbjct: 1 MGNSVLWIRNDFRFHDNTALINAINDIKDNENLIFIYHLDPEIIK---IETTSYAYFFSS 57 Query: 65 LLQVQKSLSQKG--IVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNR-QYEINEVRRDK 121 L +S +KG I F Y + D++ L+ + + K++YN + + + K Sbjct: 58 LNSYYESCLKKGLDIYFLYGEILTCFDTL--LNEFS---NIDKIYYNTIECGYGKSQEQK 112 Query: 122 LLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPF-------RKALIQNLVQADL 174 L + V SF D L +L YKV+T + +K QN+ A L Sbjct: 113 LNRFLKRKNVEVFSFYDHHLHSANKVLKEDNSHYKVFTHYYNKWMSSKKPEEQNIDYAKL 172 Query: 175 RSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQR 234 + + P+ + MF GE+ A L F K+ Y E R Sbjct: 173 SEIILSDFSKKDPIGKEKFIELRNLLNNDF-SMFT-GEEKARECLADFMNAKLCSYNENR 230 Query: 235 DIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHL 294 + P + GTS LS YL+ G LS R+ +N ++ G ++ EL WR+FY + Sbjct: 231 EYPFLDGTSHLSHYLTTGQLSVREVFN------AATMMPFSLGQEIFIKELAWRDFYNMI 284 Query: 295 MAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLR 354 F+P+ + I I W D WK G TGFPIIDAAMRQL GWMHNRLR Sbjct: 285 YYFHPNQ-HNEEIIEKYRYINWEYDEENFIKWKSGLTGFPIIDAAMRQLREEGWMHNRLR 343 Query: 355 MITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQ 414 MITASFL+KDLL+DWR+GE+YF L+D D ASN GGWQWAAS G D+VPYFRIFNP Q Sbjct: 344 MITASFLIKDLLIDWRLGEKYFSEMLIDYDTASNIGGWQWAASVGTDAVPYFRIFNPITQ 403 Query: 415 GKRFDPQGTFIRHWLPELNNVPTQYIHAPHSW---LDKN---DLSLNYPLPIVDHKKACH 468 K++DP+G FI+ ++ EL ++PTQYIH P + L++N D+ Y PIVDHK Sbjct: 404 SKKYDPEGKFIKRYVKELEDIPTQYIHEPFKFKKQLEENYGIDIKKLYVSPIVDHKTQRQ 463 Query: 469 HTLNQY 474 L + Sbjct: 464 KALEMF 469 >gi|262277239|ref|ZP_06055032.1| deoxyribodipyrimidine photo-lyase [alpha proteobacterium HIMB114] gi|262224342|gb|EEY74801.1| deoxyribodipyrimidine photo-lyase [alpha proteobacterium HIMB114] Length = 470 Score = 270 bits (690), Expect = 4e-70, Method: Compositional matrix adjust. Identities = 171/498 (34%), Positives = 264/498 (53%), Gaps = 53/498 (10%) Query: 7 MSVHLV-WLRNDLRITDNKAL--YAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYA 63 M + L+ WLRND R+ DN+AL + N+D VF + ++ ++ + Q ++Y Sbjct: 1 MKIMLIYWLRNDFRLNDNEALSYLLSSENNDF----VFFSYDKE--KYKFRSAQKWWLYK 54 Query: 64 SLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD--- 120 +L K LS+ G+ F D +L+ +++T++ +N+ + E+ + Sbjct: 55 TLKIFDKKLSEIGVKFIVEN----DLEYSFLEKIIKNKKITEVCWNKIFSPEEIAIENNI 110 Query: 121 -KLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRK----------ALIQNL 169 KLLEK + + K F ++L P ++V+TPF K +NL Sbjct: 111 IKLLEK---NNIKYKIFSSNLLQNPDQCRKKDNTPFQVFTPFWKNAEMIYLKNYKYKKNL 167 Query: 170 VQADLRSLPVPAIRLTGPVTPSN--IPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKV 227 +++ +SL + P +F Y FP GE AL ++ F EK+ Sbjct: 168 IKSK-KSLKNNNQSKIETILPKKKWYEKFEKY-------WFP-GEDIALKKIKSFNSEKI 218 Query: 228 YYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIW 287 +Y + RD P+I+GTS+LSP+L+ G +SP++ ++ + + K G +LNE+ W Sbjct: 219 NFYDKNRDFPSIEGTSKLSPHLAFGEISPKKIYDECTK-----IKNKKIGVTKFLNEIGW 273 Query: 288 REFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIG 347 REF HL+ +P + + K +K W+++ L WK+G TG+PI+DAAM+QL G Sbjct: 274 REFAYHLINHFP-IMLKKNLRKNFDKFPWSENKKFLDKWKKGNTGYPIVDAAMKQLYETG 332 Query: 348 WMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFR 407 WMHNRLRM+ SFLVK L ++W GE+YF LLD D A+N GWQW A G D+ PYFR Sbjct: 333 WMHNRLRMVVGSFLVKHLRINWTEGEKYFKDTLLDYDTANNVSGWQWIAGCGADAAPYFR 392 Query: 408 IFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPL------PIV 461 IFNP QG++FDP G F+++W+P L VP ++IH P ++ +N+ L PIV Sbjct: 393 IFNPITQGEKFDPNGEFVKYWIPNLKKVPKKFIHKPWELPEEQAKLINFNLIKDYFEPIV 452 Query: 462 DHKKACHHTLNQYYAAKK 479 DHK A L + KK Sbjct: 453 DHKIAREAALKAFEFTKK 470 >gi|254283655|ref|ZP_04958623.1| deoxyribodipyrimidine photo-lyase [gamma proteobacterium NOR51-B] gi|219679858|gb|EED36207.1| deoxyribodipyrimidine photo-lyase [gamma proteobacterium NOR51-B] Length = 477 Score = 270 bits (690), Expect = 4e-70, Method: Compositional matrix adjust. Identities = 171/483 (35%), Positives = 251/483 (51%), Gaps = 28/483 (5%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 + W R DLR+TD L AA V+ VFI P + + +++ SL +Q Sbjct: 6 IFWFRQDLRLTDLPGLCAAAER--GAVLPVFIHDPSLGNEWSLGGASQWWLHYSLKSLQA 63 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130 S+ +G + + D L + + + ++ +RQY+ + L + L Sbjct: 64 SIEARGGELILRRGAPEDV----LTALIEESGASAVYSSRQYQPWATSLETTLHETLTDE 119 Query: 131 VI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVP----AIRLT 185 I K + ++L PGS+L YKV+TPF +A +Q+ + RS+P +R Sbjct: 120 GIDYKRYAGTLLFEPGSVLTGGGTPYKVFTPFWRACLQSEAPREPRSIPDVEWHVGVRSE 179 Query: 186 G----PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQG 241 + PSN P + D + ++ GE+ A L F V +Y + RDIPA Sbjct: 180 SVEDWNLRPSN-PNWAD----GWESLWSPGEEGATRRLDDFLAGTVKHYGDGRDIPAEAY 234 Query: 242 TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSV 301 TS+LSP+L G +SPRQ W+ + L + +L+E+ WREF L+ +P + Sbjct: 235 TSRLSPHLKFGEISPRQIWH-AAQYAKQRLPEAAESIDKFLSEIGWREFCYTLLDQFPEM 293 Query: 302 CMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFL 361 KPF + W L+AW++G TG+PI+DA MR+L G+MHNR+RMIT SFL Sbjct: 294 P-NKPFKAQFDHFPWAGTQKALKAWQKGLTGYPIVDAGMRELWQTGFMHNRVRMITGSFL 352 Query: 362 VKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQ 421 K LL WR GE +F L+D D+ASN WQW A +G D+ PYFRIFNP QG++FD Sbjct: 353 TKHLLTHWRAGELWFWDCLVDADIASNACSWQWVAGSGADASPYFRIFNPIAQGEKFDKA 412 Query: 422 GTFIRHWLPELNNVPTQYIH----APHSWLDKNDLSLN--YPLPIVDHKKACHHTLNQYY 475 G ++R ++PE+ N+P +YIH AP S L+++ + L YP PIVDHK A L Y Sbjct: 413 GEYVRRYVPEIANLPDKYIHKPWEAPASILEQSGIVLGDTYPEPIVDHKSARQSALAAYE 472 Query: 476 AAK 478 K Sbjct: 473 EVK 475 >gi|322369279|ref|ZP_08043844.1| deoxyribodipyrimidine photo-lyase [Haladaptatus paucihalophilus DX253] gi|320551011|gb|EFW92660.1| deoxyribodipyrimidine photo-lyase [Haladaptatus paucihalophilus DX253] Length = 464 Score = 270 bits (690), Expect = 4e-70, Method: Compositional matrix adjust. Identities = 170/485 (35%), Positives = 255/485 (52%), Gaps = 37/485 (7%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 +H+ W R DLR+ DN+AL + + V+ VF+ H R S F+ ++L + Sbjct: 1 MHVHWHRRDLRVADNRAL-----SRGSPVLPVFVFDGAVL-SHAAPPRVS-FMLSALESL 53 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128 ++S ++G + D E + ++ +NR Y RD + L Sbjct: 54 RESYRERGGDLLVLRG----DPREEIPRIAAAADADRVVWNRDYSGLAKERDADVRDALS 109 Query: 129 HRVICK-SFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRS---LPVPAIRL 184 I + +F D++L PGSI + Y VYT F K A + + VP + Sbjct: 110 DAGIERRAFHDALLHTPGSITTNQGDYYSVYTYFWKKWRDGAKDAPFDAPDEIVVPDEVV 169 Query: 185 TGPVTPSNIPRFFDYPFQAIDP---MFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQG 241 + IP D F+ DP + P G + A +L FC++ VY Y + RD PA + Sbjct: 170 EEGI---EIPTLADLGFE--DPEAEIPPAGTEAARDLLSAFCEDDVYRYDKARDYPARES 224 Query: 242 TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFS---WLNELIWREFYRHLMAFY 298 TS+LSP+L G + R+ W E + + A S + +L WREFY H++ Sbjct: 225 TSRLSPHLKFGTVGIREVWE--ATERAKDAAESEDAAESVEEFQGQLAWREFYAHVLDDT 282 Query: 299 PSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITA 358 PSV + + + + I W D ++AWK G TG+PI+DA MRQL W+HNR+RMI A Sbjct: 283 PSVVV-ENYKDYQYDIAWRDDPDGVRAWKDGETGYPIVDAGMRQLREEAWVHNRVRMIIA 341 Query: 359 SFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRF 418 SFL KDLLVDWR G +++ +L+D D A++NGGWQWAASTG D+ PYFR+FNPT QG+RF Sbjct: 342 SFLTKDLLVDWREGYDWYRRKLVDHDTANDNGGWQWAASTGTDAQPYFRVFNPTTQGERF 401 Query: 419 DPQGTFIRHWLPELNNVPTQYIHAPHSWL-----DKNDLSLNYPLPIVDHKKACHHTLNQ 473 DP +I+ ++PEL +VP + + H W ++ +L+ +YP PIVDH + + Sbjct: 402 DPDAEYIKRFVPELADVPPKTV---HEWTELDPDERRELAPDYPDPIVDHSERREMAITM 458 Query: 474 YYAAK 478 + A+ Sbjct: 459 FENAR 463 >gi|300311186|ref|YP_003775278.1| deoxyribodipyrimidine photolyase [Herbaspirillum seropedicae SmR1] gi|300073971|gb|ADJ63370.1| deoxyribodipyrimidine photolyase (photoreactivation) protein [Herbaspirillum seropedicae SmR1] Length = 494 Score = 270 bits (690), Expect = 4e-70, Method: Compositional matrix adjust. Identities = 175/498 (35%), Positives = 253/498 (50%), Gaps = 42/498 (8%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPE---QWRQHGISA-RQSHFIYASLL 66 LVW R DLR+TD+ ALY A S +V VF+ + + G++ R+ F+ AS+ Sbjct: 8 LVWFRRDLRMTDHAALYYALSQSR-QVWCVFVFDTDILAALKAEGVTQDRRIDFLLASVA 66 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 ++ ++L G S ++ + + + V ++ N YE V RD + + Sbjct: 67 ELDEALRHAGGGLIVLHGS----AVTQIPALAAELDVQAVYANTDYEPAAVERDAAVAQT 122 Query: 127 L-QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQAD------------ 173 L + S+ D V+ +L + + + V+TP++ A + L AD Sbjct: 123 LAKSGAQLLSYKDQVIFEKDEVLTQSAKPFSVFTPYKNAWMSKLAAADGDFFLKPYPVEK 182 Query: 174 -LRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVE 232 L +L P + G PS+ F P + P G A +L +F +++ Y Sbjct: 183 YLTALASPPGK-AGHALPSHRQLGF-APSNLQELKIPTGMSGAQSLLDEFL-DRIGSYGA 239 Query: 233 QRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYR 292 RD PA++G S LS +L G +S R + + WL+EL WR+FY Sbjct: 240 ARDFPAVKGPSYLSVHLRFGTISIRTLARAAMQAMHAGQGAAGAAV--WLSELTWRDFYF 297 Query: 293 HLMAFYPSVCMGKPFIPWTEKIEWNKDSH---LLQAWKQGYTGFPIIDAAMRQLNTIGWM 349 ++ +P V F P + I+W + L AW +G TG+P++DAAM Q+N G+M Sbjct: 298 MILHHHPRVTR-HAFKPEYDAIQWEQGPQAEALFAAWCEGRTGYPLVDAAMAQINQSGYM 356 Query: 350 HNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIF 409 HNRLRM+ ASFL KDL +DWR GE YF L D DLA+NNGGWQWA+S+G D+ PYFRIF Sbjct: 357 HNRLRMVVASFLTKDLGIDWRWGERYFARHLNDFDLAANNGGWQWASSSGCDAQPYFRIF 416 Query: 410 NPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND--------LSLNYPLPIV 461 NP Q ++FDP G FIR +LP+L + + IHAP W D L NYP PIV Sbjct: 417 NPVTQSEKFDPDGKFIRRYLPQLAKLSNKRIHAP--WTATPDERMDAGVVLGQNYPRPIV 474 Query: 462 DHKKACHHTLNQYYAAKK 479 DH +A TL +Y KK Sbjct: 475 DHAQARERTLARYAVVKK 492 >gi|47564301|ref|ZP_00235346.1| deoxyribodipyrimidine photolyase classI [Bacillus cereus G9241] gi|47558453|gb|EAL16776.1| deoxyribodipyrimidine photolyase classI [Bacillus cereus G9241] Length = 476 Score = 270 bits (689), Expect = 5e-70, Method: Compositional matrix adjust. Identities = 165/491 (33%), Positives = 261/491 (53%), Gaps = 44/491 (8%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 ++ + D R+ DN AL+ A + + V+ V++ Q I + +++ +++ VQK Sbjct: 6 IMMFQKDFRLYDNPALFEAAQSGE--VVPVYV----QDETFSIGSAAKWWLHHAIIDVQK 59 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130 L G F + ++ + ++ Q +T +++N YE + ++ ++ ++ L+ + Sbjct: 60 QLKALGATFIIRKGKTQEEILSLIE----QLDITAVYWNICYEPDRLQSNQKMKMMLEDK 115 Query: 131 -VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189 +ICK F+ +LL P I YKV+TPF A + +++P P ++ Sbjct: 116 GIICKEFNSHLLLEPWIIKKKDNTEYKVFTPFYNAFQK-------QAIPKPTSKVQSIKW 168 Query: 190 PSNIPRFFDYPFQAIDPMFP----------IGEQNALHILRKFCKEKVYYYVEQRDIPAI 239 S++P + P P E+ A +KF K+ +Y E RD P Sbjct: 169 GSSLPASLSVSELHLLPTIPWTSHMESIWNPTEEGAYKTFKKFFSSKLTFYSEGRDFPNQ 228 Query: 240 QGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAF-----SWLNELIWREFYRHL 294 S L+PYLS G +S + ++ L ++ + +S F S++ +LIWREF +L Sbjct: 229 NVHSMLAPYLSFGQISVKLMFHYL----INKSTERQSSLFEKQVNSFIRQLIWREFSYYL 284 Query: 295 MAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLR 354 + YP + KP E W+K+ LL+ W++G TG+P IDA MR+L G+MHNR R Sbjct: 285 LYHYP-FTVYKPLNKNFEHFPWDKEEELLRVWQKGETGYPFIDAGMRELWQTGFMHNRAR 343 Query: 355 MITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQ 414 M ASFLVK LL+ W+ G ++FM LLD D+A+N GWQW A +G D+ PYFRIFNP Q Sbjct: 344 MAVASFLVKHLLIPWQEGAKWFMDTLLDADIANNTMGWQWVAGSGADASPYFRIFNPITQ 403 Query: 415 GKRFDPQGTFIRHWLPELNNVPTQYIH----APHSWLDKNDLSLN--YPLPIVDHKKACH 468 G++FD G +IR W+PEL ++P +YIH AP L K ++ L YPLP+VDHK A Sbjct: 404 GEKFDKDGEYIRKWVPELRDIPNKYIHKPWEAPEPILQKANIQLGDTYPLPVVDHKAARE 463 Query: 469 HTLNQYYAAKK 479 L Y + K+ Sbjct: 464 RALCAYKSMKE 474 >gi|114570041|ref|YP_756721.1| deoxyribodipyrimidine photo-lyase type I [Maricaulis maris MCS10] gi|114340503|gb|ABI65783.1| deoxyribodipyrimidine photo-lyase type I [Maricaulis maris MCS10] Length = 499 Score = 270 bits (689), Expect = 5e-70, Method: Compositional matrix adjust. Identities = 171/490 (34%), Positives = 245/490 (50%), Gaps = 35/490 (7%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 LVW R DLR+ DN AL+AA S ++ FI P+ Q +++ SL + + Sbjct: 11 LVWFRRDLRLHDNPALWAAVR-SGRPLVCAFIDDPDAVAQLAPGRASRWWLHHSLAALSR 69 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130 S+ Q+G + D+ L C + +++F+NR D L RL R Sbjct: 70 SIRQRGGQLVLRRG----DTTSELVRLCGETGSSEVFWNRGDNPTRDSGDTALAARLADR 125 Query: 131 -VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189 V + F L P + LN + + Y+V+TPF KA ++ +LP P VT Sbjct: 126 GVKARGFASGTLFNPATHLNGSGKPYRVFTPFWKACLR--APEPSAALPAPDRLPGAAVT 183 Query: 190 PSNIPRFFDYPFQAID------PMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS 243 S+ + QA D + GE AL+ L F ++ Y + RD P GTS Sbjct: 184 ASDNLEDWSLRPQAPDWASGFSQDWEPGEDGALNRLEAFLANELADYPQSRDRPDEDGTS 243 Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAF----SWLNELIWREFYRHLMAFYP 299 +LSP+L+ G +SPR W+ +++ + G+F +L+EL WR+F +L + Sbjct: 244 RLSPHLAWGEISPRTIWHTVRDH------AERGGSFQGGEKFLSELGWRDFAIYLAHHFG 297 Query: 300 SVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITAS 359 S+ + F + W + L AWK+G TG PI+DA MRQL T GWMHNR+RMITAS Sbjct: 298 SL-RDENFNRQFDHFPWRSNPAGLDAWKRGQTGIPIVDAGMRQLWTTGWMHNRVRMITAS 356 Query: 360 FLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFD 419 FL+K L V WR G +F L+D DL N WQW A +G D+ PYFRIFNP QG+RFD Sbjct: 357 FLIKHLGVHWRDGMAWFEDTLVDADLNVNAASWQWVAGSGADAAPYFRIFNPVTQGERFD 416 Query: 420 PQGTFIRHWLPELNNVPTQYIHAPHSWLDKND--------LSLNYPLPIVDHKKACHHTL 471 PQG ++ W+PEL + + +HAP W + L YP P+ D K L Sbjct: 417 PQGLYVHRWVPELTGLSGKAVHAP--WTRPANELIAAGISLGQTYPAPVTDLKTGREQAL 474 Query: 472 NQYYAAKKQS 481 + Y K ++ Sbjct: 475 DAYQTMKARA 484 >gi|328725336|ref|XP_003248433.1| PREDICTED: deoxyribodipyrimidine photo-lyase-like [Acyrthosiphon pisum] Length = 187 Score = 270 bits (689), Expect = 5e-70, Method: Compositional matrix adjust. Identities = 118/184 (64%), Positives = 143/184 (77%) Query: 295 MAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLR 354 M +P++C +PF+ WT ++W ++ L+AW+QG TG+PI+DAAMRQLNT+GWMHNRLR Sbjct: 1 MVAFPALCKHQPFVDWTRNVDWQQNEAHLKAWQQGKTGYPIVDAAMRQLNTLGWMHNRLR 60 Query: 355 MITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQ 414 MITASFLVKDLL+DWR GE YFM QL+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT Q Sbjct: 61 MITASFLVKDLLIDWREGERYFMQQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQ 120 Query: 415 GKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQY 474 G+RFD QG FIR WLPEL VP IH P W KN+ L+YP PIV+HK A TL+ + Sbjct: 121 GERFDKQGAFIREWLPELKEVPDSDIHQPQVWAQKNNKKLDYPAPIVEHKDARKKTLDAF 180 Query: 475 YAAK 478 A+ Sbjct: 181 ERAR 184 >gi|124265897|ref|YP_001019901.1| deoxyribodipyrimidine photo-lyase type I [Methylibium petroleiphilum PM1] gi|124258672|gb|ABM93666.1| Deoxyribodipyrimidine photo-lyase type I [Methylibium petroleiphilum PM1] Length = 497 Score = 270 bits (689), Expect = 5e-70, Method: Compositional matrix adjust. Identities = 180/507 (35%), Positives = 253/507 (49%), Gaps = 56/507 (11%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 + LVW R DLR D+ ALY A + +V F+ E + R+ FI SL+ Sbjct: 9 LDAALVWCRRDLRAHDHAALYHALRAAR-RVWVAFVFDTEILDPLPRTDRRVEFIRDSLV 67 Query: 67 QVQKSL---------SQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEV 117 + L G++ ++ + D I L + V ++ N YE V Sbjct: 68 DLDAQLHTLGRSHGTEGVGLIVRHGRAR---DEIPRLAAAL---HVQAVYANTDYEPAAV 121 Query: 118 RRDKLLEKRL-QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRS 176 RD + L Q + D V+ +L A Y V+TP++ A ++ L L++ Sbjct: 122 ARDAQVRGALAQTGIAFHPAKDQVVFDTDEVLTGAGTPYGVFTPYKNAWLKKLEPFYLQA 181 Query: 177 LPVPAIRLTGPVTP------SNIPRFFDYPFQAIDPM---FPIGEQNALHILRKFCKEKV 227 PV R G + P + +P F+ + G +L F E++ Sbjct: 182 YPVG--RHAGALAPRPAGEAAGVPTLAAIGFEPTNLAALKLAPGTAGGRALLEDFGDERI 239 Query: 228 YYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQ----CWNRLKEEFVDLLIKPKSGAFSWLN 283 Y + RD PA++G S LS +L G LS R+ W+R + GA WL+ Sbjct: 240 DRYDQTRDFPAVKGPSYLSVHLRFGTLSIRELARLAWDRARAG--------SRGAEVWLS 291 Query: 284 ELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSH---LLQAWKQGYTGFPIIDAAM 340 ELIWR+FY ++ +P V + F P +KI+W H L AW +G TG+P++DAAM Sbjct: 292 ELIWRDFYHQVLHHHPQVVE-RSFKPEYDKIKWEHGKHADALFAAWCEGRTGYPLVDAAM 350 Query: 341 RQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGN 400 Q+N G+MHNRLRM+ ASFL KDL +DWR GE YF +L D DLA+NNGGWQWA+S+G Sbjct: 351 LQINQTGYMHNRLRMVVASFLCKDLGLDWRRGERYFAEKLNDYDLAANNGGWQWASSSGC 410 Query: 401 DSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSL------ 454 D+ PYFRIFNP Q ++FD QG FIR +LP+L +P +HAP W D L L Sbjct: 411 DAQPYFRIFNPVSQSQKFDAQGKFIRRYLPQLAALPDAALHAP--W-DAKPLDLVAAGLV 467 Query: 455 ---NYPLPIVDHKKACHHTLNQYYAAK 478 +YP PIV H+ A TL +Y K Sbjct: 468 LGRDYPEPIVRHELARERTLARYAVVK 494 >gi|296116904|ref|ZP_06835507.1| deoxyribodipyrimidine photolyase [Gluconacetobacter hansenii ATCC 23769] gi|295976544|gb|EFG83319.1| deoxyribodipyrimidine photolyase [Gluconacetobacter hansenii ATCC 23769] Length = 513 Score = 269 bits (688), Expect = 6e-70, Method: Compositional matrix adjust. Identities = 165/471 (35%), Positives = 236/471 (50%), Gaps = 32/471 (6%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 +VW RNDLR++DN AL A S V+ +F+ P+ R+H + A ++ L + Sbjct: 33 IVWFRNDLRLSDNPALSHAV-ASGRPVLCLFVHDPQHAREHALGAAAQWWLDGGLRALHA 91 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130 L++ G V C D++ + Q ++ +NR+Y+ D ++ L+H Sbjct: 92 DLARMGAVLHV-ACG---DALALVPRMAAQAGAAEVVWNRRYDPLGRETDTAIKATLKHA 147 Query: 131 -VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189 VI SF VL P ++ A ++V+T + +A A P+P + G V Sbjct: 148 GVIAHSFAAGVLYEPWTVRTRAGDAFRVFTAWWRA-------ARASGEPLPPLPAPGHVH 200 Query: 190 PSNIPRFFDYPFQAID-----PMFP-----------IGEQNALHILRKFCKEKVYYYVEQ 233 + P ++ ID P+ P GE A L F + Y + Sbjct: 201 AAVSPGAWEGCCVGIDALRLVPVSPDWAGGLREAWQPGEAQARDRLHHFVDGGLGGYADA 260 Query: 234 RDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKP--KSGAFSWLNELIWREFY 291 RD P + TS+LSP L G +SPRQ W+ + +L+EL WR+F Sbjct: 261 RDRPDLPATSRLSPDLRFGHISPRQAWHAAVAAVRGGAAGGMGEQDLEKFLSELGWRDFA 320 Query: 292 RHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHN 351 L+ P + F + + W D+ L AW+QG TG+PI+DA MRQL GWMHN Sbjct: 321 VSLLYAQPELVSCN-FRTEFDAMPWRNDARDLCAWQQGRTGYPIVDAGMRQLWRTGWMHN 379 Query: 352 RLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNP 411 R+RMI ASFL K LL DWR+GE +F L+D D+ASN WQW A G D+ PYFR+FNP Sbjct: 380 RVRMIVASFLTKHLLCDWRMGEAWFRDTLVDADIASNVINWQWVAGCGVDAAPYFRVFNP 439 Query: 412 TIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVD 462 +Q +RFDP GT++R W+PEL VPT +HAP + + YP PIVD Sbjct: 440 VLQARRFDPDGTYVRRWVPELAGVPTSCVHAPWTCDPAIRARVAYPSPIVD 490 >gi|300710895|ref|YP_003736709.1| deoxyribodipyrimidine photo-lyase [Halalkalicoccus jeotgali B3] gi|299124578|gb|ADJ14917.1| deoxyribodipyrimidine photo-lyase [Halalkalicoccus jeotgali B3] Length = 459 Score = 269 bits (688), Expect = 7e-70, Method: Compositional matrix adjust. Identities = 162/461 (35%), Positives = 238/461 (51%), Gaps = 26/461 (5%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 + L W R DLR+TDN+ L A N+ + VF+ E +H R + F+ +L + Sbjct: 1 MDLCWHRRDLRVTDNRML--AGRNA----LPVFVLD-EAVLEHAAPPRVA-FMLDALESL 52 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128 +++ ++G + D + + + V + +N Y RD+ + L Sbjct: 53 REAYRERGGNLLIERG----DPSAVVPTLAAEFGVDTVVWNHDYSGLARERDEAVRAALD 108 Query: 129 HRVIC-KSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAI---RL 184 R I + + D+V+ PGSI Y V+T F K + R P P + Sbjct: 109 ERGINHEQYHDAVIHEPGSITTTDGDPYSVFTYFGKKWLD-------RDKPDPVSAPESV 161 Query: 185 TGPVTPSNIPRFFDYPFQAIDPMFP-IGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS 243 + P P IP D F+A + P G A + L FC + Y E RD P+ GTS Sbjct: 162 SDPDDPGGIPALSDLGFEAPEGSVPDAGPDAAENRLETFCDGPIRRYEEDRDYPSRGGTS 221 Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFS-WLNELIWREFYRHLMAFYPSVC 302 +LS L G + R+ + + + K + G+ + ++L WREFY ++ ++P+V Sbjct: 222 RLSVDLKFGTVGIRRVYAATENAKAEAGSKEERGSVEEFQSQLAWREFYTQVLYYHPNVV 281 Query: 303 MGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLV 362 K + + +IEW D AW +G TG+PI+DA MRQL WMHNR+RM+ A+FL Sbjct: 282 T-KNYKTYDGEIEWRTDEEGFDAWTEGKTGYPIVDAGMRQLREESWMHNRVRMLVAAFLT 340 Query: 363 KDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQG 422 KDLLVDWR G ++F L+D D ++ GGWQWAASTG D+ PYFRIFNP QG+R+DP Sbjct: 341 KDLLVDWREGYDWFRKHLVDHDTGNDTGGWQWAASTGTDAQPYFRIFNPMTQGERYDPDA 400 Query: 423 TFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDH 463 +IR ++PEL V + IHA H D+ + YP PIVDH Sbjct: 401 EYIREYVPELREVDPKTIHAWHDLDDEARPDVGYPAPIVDH 441 >gi|228921829|ref|ZP_04085144.1| Deoxyribodipyrimidine photolyase [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228837834|gb|EEM83160.1| Deoxyribodipyrimidine photolyase [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] Length = 476 Score = 269 bits (688), Expect = 7e-70, Method: Compositional matrix adjust. Identities = 164/490 (33%), Positives = 256/490 (52%), Gaps = 42/490 (8%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 +V + D R+ DN AL+ A + + V+ ++I Q I + +++ +++ ++K Sbjct: 6 IVMFQKDFRLYDNPALFEAVQSGE--VLPIYI----QDETFSIGSAAKWWLHHAIIDIKK 59 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130 L G + + ++ + S Q +T +++N Y+ + ++ ++ ++ L+ + Sbjct: 60 QLEALGSTLIIRKGNTQEEIL----SLIKQLDITAVYWNSCYDPDRLKSNQKMKMILEDK 115 Query: 131 -VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189 +ICK F+ +LL P I YKV+TPF A + ++ P P ++ Sbjct: 116 GIICKEFNSHLLLEPWIIKKKDNTEYKVFTPFYNAFQKQVI-------PKPTSKVQSIKW 168 Query: 190 PSNIPRFFDYPFQAIDPMFPIG----------EQNALHILRKFCKEKVYYYVEQRDIPAI 239 S++P + P P E+ A + +KF K+ +Y E RD P Sbjct: 169 GSSLPASLSVSELHLLPTIPWTSHMEAIWDPTEEGAYKVFKKFFSSKLAFYSEGRDFPNQ 228 Query: 240 QGTSQLSPYLSIGVLSPRQCW----NRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLM 295 S L+PYLS G + + + N+ E L K S++ +LIWREF +L+ Sbjct: 229 NAHSMLAPYLSFGQIPVKLMYHYLINKSTERQCSLFEK---QVISFIRQLIWREFSYYLL 285 Query: 296 AFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRM 355 YP + KP E WNK+ LL+ W++G TG+P IDA MR+L G+MHNR RM Sbjct: 286 YHYP-FTVYKPLNKNFEHFPWNKEEELLRVWQKGETGYPFIDAGMRELWQTGFMHNRARM 344 Query: 356 ITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQG 415 ASFLVK LL+ W+ G ++FM LLD D+A+N GWQW A +G D+ PYFRIFNP QG Sbjct: 345 AVASFLVKHLLISWQEGAKWFMDTLLDADIANNTMGWQWVAGSGADASPYFRIFNPITQG 404 Query: 416 KRFDPQGTFIRHWLPELNNVPTQYIH----APHSWLDKNDLSLN--YPLPIVDHKKACHH 469 ++FD G +IR W+PEL ++P +YIH AP L K ++ L YPLP+VDHK A Sbjct: 405 EKFDKNGEYIRKWVPELRDIPNKYIHKPWEAPEHILQKANIKLGHTYPLPVVDHKAARER 464 Query: 470 TLNQYYAAKK 479 L Y + K+ Sbjct: 465 ALCAYKSMKE 474 >gi|254471109|ref|ZP_05084512.1| deoxyribodipyrimidine photo-lyase [Pseudovibrio sp. JE062] gi|211960251|gb|EEA95448.1| deoxyribodipyrimidine photo-lyase [Pseudovibrio sp. JE062] Length = 471 Score = 269 bits (687), Expect = 8e-70, Method: Compositional matrix adjust. Identities = 177/493 (35%), Positives = 262/493 (53%), Gaps = 43/493 (8%) Query: 6 AMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASL 65 + S+ + W R DLR++DN AL AAC +VI ++I +++ +++Y SL Sbjct: 2 SASIVIHWFRQDLRLSDNPALSAACEA--GEVIPLYILNDKEYGAREFGGATKNWLYYSL 59 Query: 66 LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125 + +SL + ++ + D ++S + +F+NR YE V D L+ Sbjct: 60 KALNESLKGQLLIRR-------GDPAVIINSLIQETGAAGVFWNRCYEPWRVEHDAQLKT 112 Query: 126 RLQHR-VICKSFDDSVLLPPGSILNHALQMYKVYTPF-RKALIQNLVQADLRSLPVP--- 180 L+ + KSF+ S+L P + YKV+TPF RK +Q + + LPVP Sbjct: 113 DLEENGITAKSFNGSLLWEPWQVGKPDGSPYKVFTPFYRKGCLQ--AEEPRKPLPVPDQL 170 Query: 181 ---AIRLTGPVTPSNIPRFFDYPFQA-IDPMFPIGEQNALHILRKFCKEKVYYYVEQRDI 236 + G ++ + D P+ A + + GE+ A + L F ++ + Y + R+ Sbjct: 171 RIHPLNTEGALSIDELNLLEDRPWSAQVSSHWEHGEKAAQNRLYAFFEDGLSDYKDGRNF 230 Query: 237 PAIQGTSQLSPYLSIGVLSPRQCWNRLK--EEFVDLLIKPKSGAFSWLNELIWREFYRHL 294 PA+ TS+LSP+L G +SP Q W L EE D+ + +EL WREF L Sbjct: 231 PALTHTSRLSPHLHFGEISPNQIWWVLGSHEETRDI--------DHFRSELGWREFSYSL 282 Query: 295 MAFYPSVCMGKPFIPWTEKIE---WNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHN 351 + PS+ P EK + W D L AW++G TG PI+DA MR+L G+MHN Sbjct: 283 LFNNPSL----PKSNLNEKFDNFPWLSDDQRLLAWQKGQTGVPIVDAGMRELWQTGYMHN 338 Query: 352 RLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNP 411 RLRMI SFLVK+LL+DWR+GEE+F L+D DLA+N+ WQW A G D+ PYFRIFNP Sbjct: 339 RLRMIVGSFLVKNLLLDWRLGEEWFWDCLVDADLANNSASWQWIAGCGADAAPYFRIFNP 398 Query: 412 TIQGKRFDPQGTFIRHWLPELNNVPTQYI----HAPHSWLDKNDLSL--NYPLPIVDHKK 465 +QG++FD G + R +LPEL ++P +Y+ AP L ++L NYPLPIVD KK Sbjct: 399 ILQGEKFDAHGDYTRRFLPELKDLPDKYLFKPWEAPKDVLKGAGVTLGENYPLPIVDLKK 458 Query: 466 ACHHTLNQYYAAK 478 + L + K Sbjct: 459 SRDEALRAFEEIK 471 >gi|304321394|ref|YP_003855037.1| blue light photoreceptor cryptochrome [Parvularcula bermudensis HTCC2503] gi|303300296|gb|ADM09895.1| blue light photoreceptor cryptochrome [Parvularcula bermudensis HTCC2503] Length = 478 Score = 269 bits (687), Expect = 1e-69, Method: Compositional matrix adjust. Identities = 166/483 (34%), Positives = 252/483 (52%), Gaps = 25/483 (5%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 ++WLR DLR DN A+ A S A V+ +++ + A Q +++ SL ++ Sbjct: 6 ILWLREDLRFDDNPAMREAAA-SGAPVLCLYVLDDATAGDFAMGAAQRWWLHHSLCAFKE 64 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130 L +G + E + + + + + +F+NR+Y + D ++ LQ Sbjct: 65 DLETRGGALILRRGKE----TEIVPALAKEIKASHVFWNRRYMKWQTDPDTEIKSALQDM 120 Query: 131 VICK-SFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189 I S + +L P I + YKVYTP+ K+L Q + +LP +L P + Sbjct: 121 GIKGISCNGRLLYEPWEIETKSGDPYKVYTPYWKSLQQK--EGPRAALPR-TDKLNAPPS 177 Query: 190 PSNIPRFFDYPF--------QAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQG 241 + R D+ + +P++ GE+ A LR + Y + R+ P Sbjct: 178 LPSTDRLDDWNLLPRSPNWAEGFEPVWTPGEKGARARLRAWLDTDAASYDDCRNRPDQDR 237 Query: 242 TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSV 301 TS+LSP+L G +SP W+ + + I PK S+L+E+ WREF L+ ++P++ Sbjct: 238 TSRLSPHLHFGEISPVVLWHSVSDAMEAGDI-PKDQGTSFLSEIAWREFSYQLLYYHPTM 296 Query: 302 CMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFL 361 +P + EW+ D L AW++G TG+PI+DA MRQL T GWMHNR+RMI SFL Sbjct: 297 -RDQPLMEKFTDFEWDTDKKALNAWQRGRTGYPIVDAGMRQLWTEGWMHNRVRMIVGSFL 355 Query: 362 VKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQ 421 VKDLL+DWR G +F L+D D A+N WQW A G D+ P+FRIFNPT Q ++FDP Sbjct: 356 VKDLLLDWRDGMRWFWDCLVDADPANNTASWQWIAGCGADAAPFFRIFNPTTQSEKFDPD 415 Query: 422 GTFIRHWLPELNNVPTQYIHAPH----SWLDKNDLSLN--YPLPIVDHKKACHHTLNQYY 475 G +IR ++PEL ++PT++IH P + L + L YP PIVDH L++Y Sbjct: 416 GAYIRRYVPELRDLPTRFIHEPRKASTAILKDAGIVLGETYPDPIVDHSDRRKQALSRYE 475 Query: 476 AAK 478 A K Sbjct: 476 AIK 478 >gi|322412229|gb|EFY03137.1| deoxyribodipyrimidine photolyase [Streptococcus dysgalactiae subsp. dysgalactiae ATCC 27957] Length = 474 Score = 268 bits (686), Expect = 1e-69, Method: Compositional matrix adjust. Identities = 174/497 (35%), Positives = 257/497 (51%), Gaps = 52/497 (10%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 V ++W R DLRI D KAL A S + + VF +Q Q +R + AS+L Sbjct: 2 VSVMWFRRDLRIEDQKALARAI-ASQSPTLCVFQFNQKQLSQP--PSRNQSAVVASVLAF 58 Query: 69 QKSLSQKGI---VFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125 ++ L ++GI V + F+ + LD + T +++N RRD+ + Sbjct: 59 KEELKERGIDLYVMHGDLITCFEQLAQQLDQW------TDVYFNYDESGFGRRRDQQAAQ 112 Query: 126 RLQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKA---------LIQNLVQADLR 175 + + I ++ D L I N + + YKV+TP+ + ++ +L + + Sbjct: 113 WFRAKKINIHAYQDHYLHGSQEIKNQSGEYYKVFTPYYRVWQCLPKETPVVVDLSRGNWL 172 Query: 176 SLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRD 235 SL P L I D F + + + A L F ++ Y RD Sbjct: 173 SLKTPQATL------ELIETLKDTTFNDV-----MTVKEAKERLNHFVDNQLADYDTTRD 221 Query: 236 IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLM 295 P+ GTS LSPYL +G++S R + + + SG +L EL WR+FY + Sbjct: 222 FPSRCGTSFLSPYLRLGMVSIRTVYQAVSQ------APASSGQAVFLKELAWRDFYHMVY 275 Query: 296 AFYPS---VCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNR 352 P+ + + + F +EW+++ +AWK+G TG+PIIDAAM+QL GWMHNR Sbjct: 276 VANPNQKKLAIQEAF----RHLEWDENPATFKAWKEGQTGYPIIDAAMKQLRATGWMHNR 331 Query: 353 LRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPT 412 LRM+ ASFL KDL +DWR+GE YF QL+D D ASN GGWQWAAS G D+VPYFRIFNP Sbjct: 332 LRMVVASFLTKDLQIDWRLGEAYFQEQLIDYDAASNIGGWQWAASVGTDAVPYFRIFNPV 391 Query: 413 IQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSL------NYPLPIVDHKKA 466 QGKRFDP G FIR +LP L +VP +Y++ P + S+ +YP P+VDH + Sbjct: 392 TQGKRFDPDGDFIRSYLPSLVSVPQKYLYEPWKMPEALQESIACIIGKDYPHPLVDHAEQ 451 Query: 467 CHHTLNQYYAAKKQSLL 483 + +Y AK+++ + Sbjct: 452 RKRAIARYEWAKEKAQM 468 >gi|260940315|ref|XP_002614457.1| hypothetical protein CLUG_05235 [Clavispora lusitaniae ATCC 42720] gi|238851643|gb|EEQ41107.1| hypothetical protein CLUG_05235 [Clavispora lusitaniae ATCC 42720] Length = 548 Score = 268 bits (685), Expect = 1e-69, Method: Compositional matrix adjust. Identities = 162/491 (32%), Positives = 256/491 (52%), Gaps = 33/491 (6%) Query: 13 WLRNDLRITDNKALYAA---CHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69 W DLR+ DN L A + ++ ++ PE H + Q ++ + SL Q+Q Sbjct: 64 WFMRDLRVRDNNGLSHANKLALKNGIPMLCFWVHCPEMELAHNVGDFQKYYRFLSLHQLQ 123 Query: 70 KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVR-RDKLLEKRLQ 128 + L++ I + D I + + V+ LF N +YE++E+R + K L+ Sbjct: 124 EKLAKLNINLIIVKAERRADIIPQVLQLLQKYGVSHLFSNLEYEVDELRLATTAMTKFLE 183 Query: 129 HRVICKSFDDSVLLPPGSILNHAL-QMYKVYTPFRKALIQNLVQADL------------- 174 ++ +S ++ PG++ + Y V++P+ +A + + Q Sbjct: 184 EKISFTPCHNSCVVLPGALKTKSKGTQYAVFSPWFRAWMAYVDQELFSKEHFEYDSPIKL 243 Query: 175 -RSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCK-EKVYYYVE 232 + L V L P + RF Y IGE AL L ++ + +++ Y + Sbjct: 244 EKQLSVSQQDLEIPDVDVDKERFHKY-------WKMIGEDGALEQLAEYIESDEINKYKD 296 Query: 233 QRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKE--EFVDLLIKPKSGAFSWLNELIWREF 290 +RD ++ S +S ++S G +S R L++ + +L SG F W+ ++ WR+F Sbjct: 297 ERDFLDLESVSNMSVHISSGTISTRTILQELRQNKKMKNLHTLKTSGVFEWIRQISWRDF 356 Query: 291 YRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMH 350 Y+H++ ++P VCM KPF + + W D + W G TGFPI+DA MR LN G+++ Sbjct: 357 YKHIICYWPYVCMFKPFHLEYDDLSWEYDEDHFERWCSGNTGFPIVDACMRCLNETGYLN 416 Query: 351 NRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFN 410 NR R+I ASFL K+LL+DWR GE+YF+S+L+D D SNNGGW +A+STG D PYFRIFN Sbjct: 417 NRGRLIVASFLSKNLLIDWRNGEQYFLSKLIDSDFCSNNGGWGFASSTGVDPQPYFRIFN 476 Query: 411 PTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHT 470 P Q +RFDP G FI+ W+PEL +V + +H S + L NY PIV HK+ Sbjct: 477 PWTQSERFDPDGEFIKKWVPELVDVSPKMLHKETS----DPLCANYTAPIVSHKETRSRA 532 Query: 471 LNQYYAAKKQS 481 L +Y AA ++ Sbjct: 533 LEKYKAAMEEG 543 >gi|76802655|ref|YP_330750.1| deoxyribodipyrimidine photolyase [Natronomonas pharaonis DSM 2160] gi|76558520|emb|CAI50112.1| deoxyribodipyrimidine photolyase [Natronomonas pharaonis DSM 2160] Length = 462 Score = 268 bits (685), Expect = 1e-69, Method: Compositional matrix adjust. Identities = 167/477 (35%), Positives = 243/477 (50%), Gaps = 23/477 (4%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M +H W R DLR+ DN+ L A + + +F+ E H R + F+ +L Sbjct: 1 MRIH--WHRRDLRVADNRGLADAP----GRPVGLFVFD-EAVLDHAAPPRVA-FLLDALS 52 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 ++ + +G + D L + V + +NR Y RD + Sbjct: 53 SLRAAYRDRGSELFIRRG----DPANVLSALADDLGVDVVSWNRDYSGLAADRDDRVADV 108 Query: 127 LQH-RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185 L V + F D++ PPG+I +A Y VY+ F K ++ + D PVPA L Sbjct: 109 LDEVGVTPQRFHDAICHPPGTITTNAGDPYSVYSYFWKKW-RDREKDD--PYPVPA--LA 163 Query: 186 GPVTPSNIPRFFDYPFQAIDPMFP-IGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244 + +P D F P G A L F ++ +Y Y E RD PA + TS+ Sbjct: 164 DATDETTLPTLADLGFDEPTAELPKAGTAPARGRLAAFLEDDIYRYEEARDYPATECTSR 223 Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKP-KSGAFSWLNELIWREFYRHLMAFYPSVCM 303 LS L G + R +++E + A + ++L WREFY H++AF P V Sbjct: 224 LSADLKFGTIGIRAVDKQVREAIAAAETDSERESAAEFRSQLAWREFYTHVLAFNPEVVT 283 Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363 + + + I+W D LL AWK+G TG+PI+DA MRQL +MHNR+RMI ASFL K Sbjct: 284 -ENYKRYEHDIDWEDDPELLAAWKRGETGYPIVDAGMRQLQAEAYMHNRVRMIVASFLTK 342 Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423 DLL+DWR G +F +L+D D A++NGGWQWAASTG D+ PYFRIFNP QG+R+DP Sbjct: 343 DLLIDWRHGYAHFRDRLVDHDTANDNGGWQWAASTGTDAQPYFRIFNPMTQGERYDPDAE 402 Query: 424 FIRHWLPELNNVPTQYIHAPH--SWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478 +IR ++PEL+ V IH+ H S + + + YP P+VDH + L+ + A+ Sbjct: 403 YIREYVPELSGVEADVIHSWHELSPTQRANAAPEYPQPVVDHSQRREQALDMFEQAR 459 >gi|332993097|gb|AEF03152.1| deoxyribodipyrimidine photo-lyase [Alteromonas sp. SN2] Length = 474 Score = 268 bits (685), Expect = 1e-69, Method: Compositional matrix adjust. Identities = 169/489 (34%), Positives = 250/489 (51%), Gaps = 36/489 (7%) Query: 12 VWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQKS 71 +W R DLR+ DN AL AAC + K+I ++I + + +++ SL + Sbjct: 1 MWFRQDLRVKDNPALNAAC--DEGKIIPIYIYDDNATDGRALGGASNWWLHHSLNSLNDR 58 Query: 72 LSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL-QHR 130 L+ VF+ D + + +++NR YE ++ RDK ++K+L + Sbjct: 59 LNGHLKVFK-------GDPKALIPALMEAYEAKGIYWNRCYEPWQINRDKAIKKQLLDND 111 Query: 131 VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAI-------- 182 S + S+L P +L Y+V+TP+ + N+ P I Sbjct: 112 YEAHSSNGSLLWEPMKVLKKDGTPYRVFTPYYRKGCLNVEPPRYPQAPPARITYADVDDS 171 Query: 183 RLTGPVTPSNIPRFFDYPFQAIDPMFP----IGEQNALHILRKFCKEKVYYYVEQRDIPA 238 ++T NI P D F GE A L+ F + Y + RDIP+ Sbjct: 172 KITKANHSCNIDDLNLLPSLGWDSDFKNHWKPGEDGAADNLQYFIQHAARKYKDARDIPS 231 Query: 239 IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFY 298 + GTS LSP+L G +SP Q W +K+ F ++L+EL WREF +L+ + Sbjct: 232 MNGTSHLSPHLHFGEVSPNQVWYAIKDRFE---TSEDKSIDTYLSELGWREFSYYLLYHF 288 Query: 299 PSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITA 358 P++ K F +K W D+ L+AW+ G TG PI+DA MR+L G+MHNR+RMI Sbjct: 289 PTIPT-KNFNDKFDKFNWRSDAKSLKAWQTGQTGIPIVDAGMRELWQTGYMHNRVRMIVG 347 Query: 359 SFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRF 418 SFLVK+LL+ W+ GE +F L+D DLASN GWQW A TG D+ PYFRIFNP +QG++F Sbjct: 348 SFLVKNLLISWQEGERWFWDCLVDADLASNTAGWQWVAGTGADAAPYFRIFNPLLQGEKF 407 Query: 419 DPQGTFIRHWLPELNNVPTQYIHAPHSW-----LDKN---DLSLNYPLPIVDHKKACHHT 470 D QG ++R + PEL ++P +YIH P W + K+ L YP PIVD K + Sbjct: 408 DKQGKYVRKYCPELADLPDKYIHKP--WDAPPVIAKDAGVHLGDTYPKPIVDLKASRQRA 465 Query: 471 LNQYYAAKK 479 L+ + A K+ Sbjct: 466 LDAFQALKE 474 >gi|300864867|ref|ZP_07109715.1| deoxyribopyrimidine photolyase [Oscillatoria sp. PCC 6506] gi|300337160|emb|CBN54865.1| deoxyribopyrimidine photolyase [Oscillatoria sp. PCC 6506] Length = 482 Score = 268 bits (685), Expect = 1e-69, Method: Compositional matrix adjust. Identities = 168/474 (35%), Positives = 247/474 (52%), Gaps = 32/474 (6%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 L W R DLRI+DN L AA H S KV+ +F ++ ++ + ++ L ++Q+ Sbjct: 6 LFWHRRDLRISDNIGLAAARHLSQ-KVVGIFCLDFNILQRDDVAPARVAYMIGCLQELQR 64 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL-QH 129 + G Q + + + + + +F+N E RD + L Q Sbjct: 65 RYLEAGSQLLILQA----EPTQGIPKLAIALQAKAVFWNLDVEPYSRERDDAVSNALKQA 120 Query: 130 RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAI-RLTGPV 188 + ++F D +L P I Y VYTPF K + + +LP+ ++ +LTG Sbjct: 121 GIKVENFWDQLLHAPDEIRTGMGTKYTVYTPFWKNWVSKPKAEPVDTLPIMSLEQLTGLT 180 Query: 189 TPSN----------IPRFFDYPFQAIDPMF-PIGEQNALHILRKFCKEKVYYYVEQRDIP 237 +P + F P+ GE A L FC +Y Y +QR+ P Sbjct: 181 AKEQEIAKLSGTIRLPSAKELGFVWNAPLIIEPGEDGAQEKLDDFCDRAIYDYDKQRNFP 240 Query: 238 AIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAF-----SWLNELIWREFYR 292 A+ GTSQLS L G + R W + V ++ K + A +W EL WREFY+ Sbjct: 241 ALDGTSQLSAALKFGAIGIRTVW----QATVTVMEKCHTEAARINIQTWQQELAWREFYQ 296 Query: 293 HLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNR 352 H M +P + G + + W+ + L QAW +G TG+PIIDAAMRQ+N GWMHNR Sbjct: 297 HAMYNFPELANGA-YREAFKDFPWDNNQELFQAWCEGKTGYPIIDAAMRQMNQTGWMHNR 355 Query: 353 LRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPT 412 RMI ASFL KDL+++W+ GE+YFM L+DGDL++NNGGWQW+AS+G D P RIFNP Sbjct: 356 CRMIVASFLTKDLIINWQWGEKYFMQNLIDGDLSANNGGWQWSASSGMDPKP-LRIFNPF 414 Query: 413 IQGKRFDPQGTFIRHWLPELNNVPTQYIHAPH-SWLDKNDLSLNYPLPIVDHKK 465 QG++FDP+ +IR W+PEL + T + A + +++ S+ YP PIVDH + Sbjct: 415 TQGQKFDPKSEYIRKWVPELRWIDTASLLAGKITPIERR--SIGYPEPIVDHNQ 466 >gi|295706162|ref|YP_003599237.1| FAD binding domain of DNA photolyase [Bacillus megaterium DSM 319] gi|294803821|gb|ADF40887.1| FAD binding domain of DNA photolyase [Bacillus megaterium DSM 319] Length = 475 Score = 268 bits (685), Expect = 1e-69, Method: Compositional matrix adjust. Identities = 165/485 (34%), Positives = 266/485 (54%), Gaps = 40/485 (8%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 +VW+R D R+ DN AL+ A + V+ V+I + + + + + +++ +L + Sbjct: 6 IVWIRKDFRLVDNPALFHAA--KEGMVVPVYIH--DDYEESSMGSASKWWLHHALNDFKN 61 Query: 71 SLSQ-KGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL-Q 128 S+ + +G + Q N D ++ L Q +++NR+YE + ++RDK L+ + Sbjct: 62 SIEKIQGTLIV--QKGNPKDVLQKL---LHQTNAQDIYWNRRYEPHVLKRDKELQAFFSE 116 Query: 129 HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLR--------SLPVP 180 ++ ++F+ +L P I YKV+T + KA ++ V + ++ S PV Sbjct: 117 QQINIRTFEGFLLHEPWKITKENGDPYKVFTAYYKASQKHSVSSAVKKVTSIQASSKPVE 176 Query: 181 AIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ 240 ++ ++ +IP +D + I + E+ A+ + + F K K+ +Y + RD PA Sbjct: 177 SLSVSDLDLLPSIP--WD---ETIKSTWEATEKGAIDVFKTFLKNKLLHYEKGRDFPAEA 231 Query: 241 GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFS-----WLNELIWREFYRHLM 295 S LSPY + G LS R ++ L+ + K S AF ++ +LIWR+F L+ Sbjct: 232 LNSFLSPYFATGQLSARVLYHYLRTK----AEKVSSDAFEQQAEMFIRQLIWRDFAYQLL 287 Query: 296 AFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRM 355 +P +P ++ +W + LQAWK G TG+P++DA MR+L G+MHNR+RM Sbjct: 288 YHFPHTTT-EPLNEKFKQFQWADGNEELQAWKNGKTGYPLVDAGMRELWETGFMHNRVRM 346 Query: 356 ITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQG 415 I ASFLVK LL+ W+ G +F L+D DLA+N GWQW A +G D+ PYFRIFNP Q Sbjct: 347 IAASFLVKHLLIHWKHGANWFFDTLVDADLANNTMGWQWVAGSGADAAPYFRIFNPITQS 406 Query: 416 KRFDPQGTFIRHWLPELNNVPTQYIH----APHSWLDKNDLSLN--YPLPIVDHKKACHH 469 ++FD +G +I+ WLPEL ++P+ YIH AP L+K +++LN YP PIVDHK A Sbjct: 407 EKFDKEGEYIKKWLPELKHIPSSYIHKPWEAPADVLEKANVTLNKTYPTPIVDHKAARER 466 Query: 470 TLNQY 474 L Y Sbjct: 467 ALEHY 471 >gi|229179435|ref|ZP_04306788.1| Deoxyribodipyrimidine photolyase [Bacillus cereus 172560W] gi|228603936|gb|EEK61404.1| Deoxyribodipyrimidine photolyase [Bacillus cereus 172560W] Length = 476 Score = 268 bits (684), Expect = 2e-69, Method: Compositional matrix adjust. Identities = 167/490 (34%), Positives = 254/490 (51%), Gaps = 42/490 (8%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 +V + D R+ DN AL+ A + + V+ V++ Q I + +++ +++ VQK Sbjct: 6 IVMFQKDFRLYDNPALFEAVQSGE--VLPVYV----QDETFSIGSAAKWWLHHAIIDVQK 59 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130 L G + + ++ + S Q +T +++N Y+ + ++ ++ ++ L+ + Sbjct: 60 QLKALGSTLIIRKGNTQEEIL----SLIKQLDITAVYWNSCYDPDRLKSNQKMKMILEDK 115 Query: 131 -VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189 +ICK F+ +LL P I YKV+TPF A + ++ P P R+ Sbjct: 116 GIICKEFNSHLLLEPWIIKKKDNTEYKVFTPFYNAFQKQVI-------PKPISRVQSIKW 168 Query: 190 PSNIPRFFDYPFQAIDPMFPIG----------EQNALHILRKFCKEKVYYYVEQRDIPAI 239 S++P + P P E+ A +KF K+ Y E RD P Sbjct: 169 GSSLPASLSVSELHLLPTIPWTSHMEAIWEPTEEGAYKTFKKFFSSKLASYSEGRDFPNQ 228 Query: 240 QGTSQLSPYLSIGVLSPRQCW----NRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLM 295 S L+PYLS G +S + + N+ E K S++ +LIWREF +L+ Sbjct: 229 NAHSMLAPYLSFGQISVKLMYHYLINKSTERQCSFFEK---QVISFIRQLIWREFSYYLL 285 Query: 296 AFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRM 355 YP + KP E WNK+ LL+ W++G TG+P IDA MR+L G+MHNR RM Sbjct: 286 YHYP-FTVYKPLNKNFEHFPWNKEEELLRVWQKGETGYPFIDAGMRELWQTGFMHNRARM 344 Query: 356 ITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQG 415 ASFLVK LL+ W+ G ++FM LLD D+A+N GWQW A +G D+ PYFRIFNP QG Sbjct: 345 AVASFLVKHLLIPWQEGAKWFMDTLLDADIANNTMGWQWVAGSGADASPYFRIFNPITQG 404 Query: 416 KRFDPQGTFIRHWLPELNNVPTQYIH----APHSWLDKNDLSLN--YPLPIVDHKKACHH 469 ++FD G +IR W+PEL ++P +YIH AP L K+++ L YP PIVDHK A Sbjct: 405 EKFDKNGEYIRRWVPELRDIPNKYIHKPWEAPEHILQKSNIKLGNTYPYPIVDHKAARER 464 Query: 470 TLNQYYAAKK 479 L Y + K+ Sbjct: 465 ALCAYKSMKE 474 >gi|311743511|ref|ZP_07717317.1| deoxyribodipyrimidine photo-lyase [Aeromicrobium marinum DSM 15272] gi|311312641|gb|EFQ82552.1| deoxyribodipyrimidine photo-lyase [Aeromicrobium marinum DSM 15272] Length = 463 Score = 268 bits (684), Expect = 2e-69, Method: Compositional matrix adjust. Identities = 165/476 (34%), Positives = 234/476 (49%), Gaps = 33/476 (6%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M ++W R DLR+ DN AL AA V+ + + W G A +A LL Sbjct: 17 MGTSVMWFRADLRLHDNPALRAAVEAGPDGVVPLVVLDDHLW---GPGAGVRTACFARLL 73 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 V + +D+ + Y RRD +E+ Sbjct: 74 AEFDERIGGLHVVHGDPVAEVVRVARAVDAGTVHVAAAHTPYG-------ARRDAAVERA 126 Query: 127 L-QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185 L H V + + PG + Y+VYTPF +A + +A P PA+R Sbjct: 127 LADHDVALVRTGSAYAVSPGRVTKPDGTPYRVYTPFHRAWSAHGWRA-----PAPAVRSV 181 Query: 186 GPVTPSNIPRFFDYPFQAIDP---MFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGT 242 + P R P A+ + P+GE+ A R + KE+V Y + RD+P + T Sbjct: 182 PWLRPGG--RTHRIPEVAVPEGVTLPPLGEEAARRRWRDW-KEQVTQYDDVRDLPGVDRT 238 Query: 243 SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVC 302 S++S +L G + PR DL G S++ E+ +REFY ++ P Sbjct: 239 SRMSVHLKWGTIHPRTL-------LADLDGHDSDGVRSYVREIAFREFYADVLHHRPDSA 291 Query: 303 MGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLV 362 G + P ++E+++ L AW+ G TG+PI+DA MRQL GWMHNR+RMI ASFLV Sbjct: 292 HGY-YNPALARMEYDRPGESLDAWRTGTTGYPIVDAGMRQLAAEGWMHNRVRMIVASFLV 350 Query: 363 KDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQG 422 KDL V+W G +FM +L DGDLASN GWQW A G D+ PY+R+FNPT QGK+FDP G Sbjct: 351 KDLHVEWTHGAAHFMDRLADGDLASNQHGWQWVAGCGTDASPYYRVFNPTTQGKKFDPDG 410 Query: 423 TFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478 T++R W+PEL +VP +++H P + D YP PIVDH + L +Y A + Sbjct: 411 TYVRRWVPELRDVPDRFVHEPWTAPTPPD---GYPAPIVDHAEERREALRRYEAVR 463 >gi|332141440|ref|YP_004427178.1| deoxyribodipyrimidine photo-lyase [Alteromonas macleodii str. 'Deep ecotype'] gi|327551462|gb|AEA98180.1| deoxyribodipyrimidine photo-lyase [Alteromonas macleodii str. 'Deep ecotype'] Length = 474 Score = 268 bits (684), Expect = 2e-69, Method: Compositional matrix adjust. Identities = 168/488 (34%), Positives = 252/488 (51%), Gaps = 29/488 (5%) Query: 6 AMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASL 65 + V ++W R DLR+ DN AL AAC I +F + R G +++ +++ SL Sbjct: 2 TIPVSIMWFRQDLRVKDNPALNAACDMGKIVPIYIFDESAPDGRMPGGASKW--WLHHSL 59 Query: 66 LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125 + K L+ +F+ + +E ++ + +F+NR YE ++ RDK ++K Sbjct: 60 KSLNKRLNGHLQIFKGDPQTLIPKLMESFNA-------SSIFWNRCYEPWQINRDKAIKK 112 Query: 126 RL-QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL 184 L SF+ S L P +L Y+V+TP+ K + + R P R+ Sbjct: 113 SLLGSDYEAHSFNGSSLWEPMKVLKKDGTPYRVFTPYYKNGCLQIEEP--RYPKAPPARI 170 Query: 185 TGPVTPSNIPRFFDYPF-------QAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIP 237 T N I + GE A L F + Y + RDIP Sbjct: 171 TYADVDDNSDGLAALALLPTIKWDDTIAKEWTPGEDGAADNLSDFIENSARRYKDGRDIP 230 Query: 238 AIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAF 297 + +GTS+LSP+L G +SP Q W +K+ F ++L+EL WREF +L+ Sbjct: 231 SAKGTSRLSPHLHFGEVSPNQVWYAIKDRFG---TSEDKSIETYLSELGWREFSYYLLFH 287 Query: 298 YPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMIT 357 +P++ K F +K W D+ L+AW+ G TG PI+DA MR+L G+MHNR+RMI Sbjct: 288 FPTLP-NKNFNDKFDKFPWRTDAKALKAWQTGNTGIPIVDAGMRELWQTGYMHNRVRMIV 346 Query: 358 ASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKR 417 SFLVK+LL+ W GE +F LLD DLASN+ WQW A +G D+ PYFRIFNP +QG++ Sbjct: 347 GSFLVKNLLLSWHEGERWFWDTLLDADLASNSASWQWVAGSGADAAPYFRIFNPILQGEK 406 Query: 418 FDPQGTFIRHWLPELNNVPTQYIH----APHSWLDKNDLSL--NYPLPIVDHKKACHHTL 471 FD +G ++R + PELN + +YIH AP + L + + L +YP PIVD K + L Sbjct: 407 FDKKGGYVRQYCPELNGLSDKYIHKPWEAPSAILKEAGVELGKDYPKPIVDLKASRQRAL 466 Query: 472 NQYYAAKK 479 + + K+ Sbjct: 467 DAFQTLKE 474 >gi|229191248|ref|ZP_04318236.1| Deoxyribodipyrimidine photolyase [Bacillus cereus ATCC 10876] gi|228592263|gb|EEK50094.1| Deoxyribodipyrimidine photolyase [Bacillus cereus ATCC 10876] Length = 476 Score = 268 bits (684), Expect = 2e-69, Method: Compositional matrix adjust. Identities = 166/490 (33%), Positives = 254/490 (51%), Gaps = 42/490 (8%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 +V + D R+ DN AL+ A + + V+ V++ Q I + +++ +++ VQK Sbjct: 6 IVMFQKDFRLYDNPALFEAVQSGE--VLPVYV----QDETFSIGSAAKWWLHHAIIDVQK 59 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130 L G + + ++ + S Q +T +++N Y+ + ++ ++ ++ L+ + Sbjct: 60 QLEALGSTLIIRKGNTQEEIL----SLIKQLDITAVYWNSCYDPDRLKSNQKMKMMLEDK 115 Query: 131 -VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189 +ICK F+ +LL P I YKV+TPF A + ++ P P R+ Sbjct: 116 GIICKEFNSHLLLEPWIIKKKDNTEYKVFTPFYNAFQKQVI-------PKPISRVQSIKW 168 Query: 190 PSNIPRFFDYPFQAIDPMFP----------IGEQNALHILRKFCKEKVYYYVEQRDIPAI 239 S++P + P P E+ A +KF K+ Y E RD P Sbjct: 169 GSSLPASLSVSELHLLPTIPWTSHMEAIWEPTEEGAYKTFKKFFSSKLASYSEGRDFPNQ 228 Query: 240 QGTSQLSPYLSIGVLSPRQCW----NRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLM 295 S L+PYLS G +S + + N+ E K S++ +LIWREF +L+ Sbjct: 229 NAHSMLAPYLSFGQISVKLMYHYLINKSTERQCSFFEK---QVISFIRQLIWREFSYYLL 285 Query: 296 AFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRM 355 YP + KP E WNK+ LL+ W++G TG+P IDA MR+L G+MHNR RM Sbjct: 286 YHYP-FTVYKPLNKNFEHFPWNKEEELLRVWQKGETGYPFIDAGMRELWQTGFMHNRARM 344 Query: 356 ITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQG 415 ASFLVK LL+ W+ G ++FM LLD D+A+N GWQW A +G D+ PYFRIFNP QG Sbjct: 345 AVASFLVKHLLIPWQEGAKWFMDTLLDADIANNTMGWQWVAGSGADASPYFRIFNPITQG 404 Query: 416 KRFDPQGTFIRHWLPELNNVPTQYIH----APHSWLDKNDLSLN--YPLPIVDHKKACHH 469 ++FD G +IR W+PEL ++P +YIH AP L K ++ L YPLP+V+HK A Sbjct: 405 EKFDKNGEYIRKWVPELRDIPNKYIHKPWEAPEHILQKANIKLGHTYPLPVVEHKAARER 464 Query: 470 TLNQYYAAKK 479 L Y + K+ Sbjct: 465 ALCAYKSMKE 474 >gi|16330382|ref|NP_441110.1| deoxyribopyrimidine photolyase [Synechocystis sp. PCC 6803] gi|2499552|sp|Q55081|PHR_SYNY3 RecName: Full=Deoxyribodipyrimidine photo-lyase; AltName: Full=DNA photolyase; AltName: Full=Photoreactivating enzyme gi|1652872|dbj|BAA17790.1| deoxyribopyrimidine photolyase [Synechocystis sp. PCC 6803] gi|1771978|gb|AAB81109.1| DNA photolyase [Synechocystis sp. PCC 6803] Length = 488 Score = 267 bits (683), Expect = 2e-69, Method: Compositional matrix adjust. Identities = 171/480 (35%), Positives = 243/480 (50%), Gaps = 23/480 (4%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ- 69 L+W R DLR+ D+ AL A AK++ VF + + ++ + ++ L +Q Sbjct: 20 LLWHRRDLRLNDHLAL-AKARQKTAKIVGVFCLDNKILQAEDMAPARVAYLLGCLQSLQD 78 Query: 70 --KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127 + L + +VFQ D ++ L + + E +RD + + L Sbjct: 79 HYQRLGSELLVFQA-------DPVQLLPKLANTLGAHGVTWTLDTEPYAQKRDLAVAQAL 131 Query: 128 QHRVICKSFD-DSVLLPPGSILNHALQMYKVYTPFRKALIQ------NLVQADLRSLPVP 180 + R + + + D ++ PG +L A Y VYTPF K Q DL+ L Sbjct: 132 RERGLAIATEWDQLMHHPGEVLTQAGSPYTVYTPFWKNWSQLPKTSPVPTPKDLQGLTPA 191 Query: 181 AIRLTGPVTPSNIPRFFDYPFQAIDPM-FPIGEQNALHILRKFCKEKVYYYVEQRDIPAI 239 P+ P IP+ D F P+ GE+ A L F + Y + R+ PA+ Sbjct: 192 EKEKLAPLEPLAIPQLADLGFIWDQPLPLTPGEEAAEQRLDWFVAHGLEEYQQNRNFPAL 251 Query: 240 QGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAF-SWLNELIWREFYRHLMAFY 298 GTSQLS L GV+SPR W E + + + +W EL WREFY+H + + Sbjct: 252 DGTSQLSAALKFGVISPRTLWQTTLEAWEQSRSEEARASIETWQQELAWREFYQHCLYSF 311 Query: 299 PSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITA 358 P++ G P+ E W ++ QAW +G TG+PIIDAAM QLN GWMHNR RMI A Sbjct: 312 PALAQGPYRSPFQE-FPWEENQDHFQAWCEGRTGYPIIDAAMAQLNQTGWMHNRCRMIVA 370 Query: 359 SFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRF 418 SFL+KDL+++W+ GE YFM L DGDLA+NNGGWQW+AS+G D P RIFNP Q ++F Sbjct: 371 SFLIKDLILNWQWGELYFMQTLYDGDLAANNGGWQWSASSGMDPKP-LRIFNPHTQAQKF 429 Query: 419 DPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478 DP+G +IR WLP+L T + + S+NYP PIVDH + +Y K Sbjct: 430 DPEGEYIRTWLPQLARFDTGDLLT-GKLTPGSRRSVNYPEPIVDHNQQQREFKRRYQLVK 488 >gi|157827751|ref|YP_001496815.1| deoxyribodipyrimidine photo-lyase [Rickettsia bellii OSU 85-389] gi|157803055|gb|ABV79778.1| Deoxyribodipyrimidine photo-lyase [Rickettsia bellii OSU 85-389] Length = 475 Score = 267 bits (683), Expect = 3e-69, Method: Compositional matrix adjust. Identities = 165/470 (35%), Positives = 243/470 (51%), Gaps = 32/470 (6%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFI-ATPEQWRQHGISARQSHFIYASLLQVQ 69 +VWLR +LR+ DNK+ AA NSD K++ +FI T R R+ F+ +L + Sbjct: 6 IVWLRRNLRLHDNKSFAAALRNSD-KILPIFIFDTTILERFKNPHDRRLSFLANTLCLIN 64 Query: 70 KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH 129 L + + ++ + ++ ++ + YE N + RDK +++ L Sbjct: 65 DELKKLKGKLLVF----YGKPLDIIPKLAATLKIKNIYADEDYEPNNIERDKKVQELLGS 120 Query: 130 RVICKSFDDSVLLPPGSILNHALQMYKVYTP----FRKALIQNLVQADLRSLPVPAIRLT 185 + D +L+ P +L + YKVYTP FRK + N + + L + L Sbjct: 121 NCTLNLYCDHLLIKPDRVLTKDNKAYKVYTPYMQAFRKFIADNGSISHNKLLTNYSYNLD 180 Query: 186 GPV-TPSNIP-RFFDYPFQAIDPMFPIG----------EQNALHILRKFCKEKVYYYVEQ 233 G + TP +I + D + + IG +NA ++L KF ++ Y Sbjct: 181 GKLYTPQDIELKTIDLNIGKSEALKQIGYVYKEDELWQPKNAQNVLDKFITRRINRYKID 240 Query: 234 RDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRH 293 RD + GTS +SPYL G++S R+C+ + G+ +W+NELIWREFY Sbjct: 241 RDFLYLDGTSTISPYLRFGLVSIRECYRKA------FNAASNPGSITWINELIWREFYAT 294 Query: 294 LMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRL 353 ++ +P+ + + KI WN + TG+PIIDAA++QL GWMHNR Sbjct: 295 ILYHFPNTVNEEFLEKYKNKIPWNNKKEYFDKFINAETGYPIIDAAVKQLVGDGWMHNRA 354 Query: 354 RMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTI 413 RMI ASF K+LL+DWR GEE+F L+D +LASN GGWQWA+S G D+ PYFRIFNP Sbjct: 355 RMIVASFFSKNLLLDWRKGEEFFAQYLMDYELASNVGGWQWASSCGTDAQPYFRIFNPYT 414 Query: 414 QGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDH 463 QGK FDP +I+ +LP L NV IH +S + + NYP PIVD+ Sbjct: 415 QGKNFDPDAEYIKKYLPILKNVQPHIIHNINS----HKMYDNYPKPIVDY 460 >gi|239835007|ref|ZP_04683335.1| Deoxyribodipyrimidine photo-lyase [Ochrobactrum intermedium LMG 3301] gi|239823070|gb|EEQ94639.1| Deoxyribodipyrimidine photo-lyase [Ochrobactrum intermedium LMG 3301] Length = 461 Score = 267 bits (683), Expect = 3e-69, Method: Compositional matrix adjust. Identities = 168/475 (35%), Positives = 260/475 (54%), Gaps = 37/475 (7%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFI-ATPEQWRQHGISARQSHFIYASLLQVQ 69 LVWLRNDLR+ DN AL+AA A + A+F+ + Q R G + R ++ SL + Sbjct: 6 LVWLRNDLRLADNPALHAAFKLGGA-ITALFVHESNPQLRDPGAAVRW--WLEQSLDLLA 62 Query: 70 KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH 129 +SL+++ I +++ ++ + +F+NR+Y E D +++ L+ Sbjct: 63 RSLNERNIELIVADG----EALNTIEQLIEENNFDTVFWNRRYAPQEREVDAVIKSGLKD 118 Query: 130 RVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188 + + +SF ++L+ P I + Y+V+TP+ K+L Q+ V R LP+P R Sbjct: 119 KGLRVESFAGNLLVEPWEIKSGNGGSYQVFTPYAKSLRQHGVS---RPLPLPD-RSVETT 174 Query: 189 TPSNIPRFFDYP----FQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244 T + P+ +Y + + ++ IGE A+ L F + Y RD P + GTS+ Sbjct: 175 TVKHTPKQKNYKEAVWSRKMSGLWMIGEAAAIDQLYHFFDTTIRDYAGDRDRPDLDGTSK 234 Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKS---GAFSWLNELIWREFYRHLMAFYPSV 301 LS +L G +SPRQ W+ V L+ + S G +L+ELIWR+F+ H + + P + Sbjct: 235 LSAHLRFGEISPRQVWHAT----VSLMDQDHSTVPGGQKFLSELIWRDFHYHQLYYRPDI 290 Query: 302 C---MGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITA 358 M W +S + +W++G TG PIIDA MRQL GWMHNR+RM+ A Sbjct: 291 AEIDMRDTL----ANTRWQSNSVGINSWRRGKTGIPIIDAGMRQLWATGWMHNRVRMLVA 346 Query: 359 SFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRF 418 S L K++ +DWR GE++F L+D D+ASN G WQW A G D+ PYFR+FNP +QG++F Sbjct: 347 SALCKNMQIDWREGEKWFWDTLVDADVASNPGNWQWVAGCGMDAAPYFRVFNPVLQGEKF 406 Query: 419 DPQGTFIRHWLPELNNVPTQYIH----APHSWLDKNDLSLN--YPLPIVDHKKAC 467 D +G ++R W+PE+ +P +IH AP + L + + L YPLPI KAC Sbjct: 407 DTKGVYVRKWVPEIAALPDCWIHKPFAAPPAVLREAGVVLGQTYPLPIFTPSKAC 461 >gi|325103845|ref|YP_004273499.1| Deoxyribodipyrimidine photo-lyase [Pedobacter saltans DSM 12145] gi|324972693|gb|ADY51677.1| Deoxyribodipyrimidine photo-lyase [Pedobacter saltans DSM 12145] Length = 448 Score = 267 bits (683), Expect = 3e-69, Method: Compositional matrix adjust. Identities = 171/491 (34%), Positives = 250/491 (50%), Gaps = 70/491 (14%) Query: 1 MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFI-------ATPEQWRQHGI 53 + T + LVWLR DLR+ D ALY A N + V+ +FI P ++ Sbjct: 11 LNTITMKQISLVWLRRDLRLDDQAALYHALKN-ETNVLPLFIFDTTILNLLPNKF----- 64 Query: 54 SARQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYE 113 R+ FI+ L ++K L D E +D + ++ ++ NR YE Sbjct: 65 -DRRVDFIHQVLSDMKKELDAINSSLLVEYGDPIDVFSELIDRFTIKA----IYTNRDYE 119 Query: 114 INEVRRDKLLEKRLQHRVIC-KSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQA 172 + RD+ ++K ++ + I K+F D + I+ Y ++TP+ + L Sbjct: 120 PTAIARDESVKKLVESKGIAFKTFKDQCIFEQSEIVKDDGSPYSIFTPYSRKWKSKLNDF 179 Query: 173 DLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFP----IGEQNALHILRKFC--KEK 226 L+S P +++ + +Q D FP +G + KF +E Sbjct: 180 YLKSYPCK--------------KYYHHFYQGDDFKFPDLESLGFSKTDIVYNKFVLSREI 225 Query: 227 VYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELI 286 V +Y + RD PA++GTS+ S +L G +S R+ R ++ + ++LNELI Sbjct: 226 VRHYDKTRDFPALKGTSRASMHLRFGTISIRKL-ARYALDYNE----------TYLNELI 274 Query: 287 WREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTI 346 WR+FY ++ YP + F +KI W + +AW +G TG+PI+DA MR+LNT Sbjct: 275 WRDFYMMILYHYPKIVR-HSFKADYDKIPWLNNEKDFKAWCEGKTGYPIVDAGMRELNTT 333 Query: 347 GWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYF 406 G+MHNR+RMI ASFL K LL+DWR GE YF +L D DL++NNGGWQWAAS+G D+VPYF Sbjct: 334 GFMHNRVRMIVASFLTKHLLIDWRWGEAYFAEKLDDYDLSANNGGWQWAASSGCDAVPYF 393 Query: 407 RIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKA 466 RIFNP Q K+FDP +IR W+PEL+ SL+YP PIV+HK A Sbjct: 394 RIFNPEEQTKKFDPNRAYIRKWIPELD-------------------SLDYPKPIVEHKFA 434 Query: 467 CHHTLNQYYAA 477 LN Y A Sbjct: 435 RERALNVYKKA 445 >gi|294654321|ref|XP_456362.2| DEHA2A00594p [Debaryomyces hansenii CBS767] gi|199428788|emb|CAG84307.2| DEHA2A00594p [Debaryomyces hansenii] Length = 555 Score = 267 bits (683), Expect = 3e-69, Method: Compositional matrix adjust. Identities = 173/498 (34%), Positives = 254/498 (51%), Gaps = 35/498 (7%) Query: 8 SVHLVWLRNDLRITDNKALYAACH---NSDAKVIAVFIATPEQWRQHGISARQSHFIYAS 64 S+ ++LR D R DNK L A + +I I E++ H +S + ++ S Sbjct: 65 SIAHLFLR-DFRTIDNKGLSIASELATTTKTPLITFHIFCLEEFDAHSVSPFKLEYMLGS 123 Query: 65 LLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRR-DKLL 123 L ++K L + I Q D + + Q + +F N +YE++E+R KL+ Sbjct: 124 LDVLKKDLREMNIPLVSLQVEKRKDVPTKIAEFLEQNNTSHVFCNMEYEVDELRLLSKLV 183 Query: 124 EKRLQHRVICKSFDDSVLLPPGSILNHAL-QMYKVYTPFRKALIQNLVQADLRSLPVPAI 182 L + DS ++ PG + + Y V+TP+ KA L D + P Sbjct: 184 CFLLDKHISFNPVHDSCIVKPGELKTKSKGTQYAVFTPWYKAWCNYLKIEDAPFMEYPRP 243 Query: 183 RLTGPVTPSNIPRFFDYPF--------------QAIDPMFPIGEQNALHILRKFCK-EKV 227 + N + FD + D + GE A L F + +K Sbjct: 244 HANESFSDPN--KLFDSEIPQVPESKRLTHDQQKEFDTCWKCGEHEAWSALSVFLESDKF 301 Query: 228 YYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNR-LKEEFVDLLIKPKSGAFSWLNELI 286 Y E R+ + + S++S +S G++S R L+ +FV + + G W+ ++ Sbjct: 302 KKYDESRNEISEESVSRMSCPISSGIISTRSIIRYILENKFVKKIDSGEQGT-GWIRQIA 360 Query: 287 WREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTI 346 WR+FYRH++ +P VCM KPF+ + + W +S W QG TGFPI+DAAMRQLN Sbjct: 361 WRDFYRHILCNWPYVCMFKPFLLEYDDLNWEYNSDHFYKWCQGKTGFPIVDAAMRQLNQT 420 Query: 347 GWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYF 406 G++HNR RMI ASFL K LL+DW+ GE YFM L+DGD ASNNGGW +++STG D PYF Sbjct: 421 GYLHNRCRMIVASFLSKHLLIDWKYGEYYFMEHLIDGDFASNNGGWGFSSSTGVDPQPYF 480 Query: 407 RIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQY-IHAPHS-----WLDKNDLSLNYPLPI 460 RIFNP +Q +RFD +GT+IR W+PEL ++ + IH P+ +KN YP PI Sbjct: 481 RIFNPWLQSERFDKKGTYIRTWVPELKDIQDEKGIHNPYEKGYGHIAEKN----GYPKPI 536 Query: 461 VDHKKACHHTLNQYYAAK 478 VDHK LN++ AK Sbjct: 537 VDHKYCRERALNRFKDAK 554 >gi|229097643|ref|ZP_04228601.1| Deoxyribodipyrimidine photolyase [Bacillus cereus Rock3-29] gi|229116646|ref|ZP_04246032.1| Deoxyribodipyrimidine photolyase [Bacillus cereus Rock1-3] gi|228666818|gb|EEL22274.1| Deoxyribodipyrimidine photolyase [Bacillus cereus Rock1-3] gi|228685782|gb|EEL39702.1| Deoxyribodipyrimidine photolyase [Bacillus cereus Rock3-29] Length = 476 Score = 267 bits (683), Expect = 3e-69, Method: Compositional matrix adjust. Identities = 164/485 (33%), Positives = 260/485 (53%), Gaps = 32/485 (6%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 +V + D R+ DN AL+ A + + V+ V++ + + +++ +++ V+K Sbjct: 6 IVMFQKDFRLYDNPALFEAAQSGE--VVPVYVHD----ETFSMGSASKWWLHHAVIDVKK 59 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130 L G + ++ + S Q R+T +++N Y+ + ++ ++ ++ L+ + Sbjct: 60 QLEALGSTLIIRKGRTEEE----IRSLIEQLRITAVYWNICYDPDRLQSNQKMKMMLEGK 115 Query: 131 -VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIR----LT 185 +ICK F+ +LL P I YKV+TPF A + ++ + V +I+ L Sbjct: 116 GIICKEFNSHLLLEPWIIKKKDNTEYKVFTPFYNAFQKQIIPKPISK--VQSIKWGNSLP 173 Query: 186 GPVTPSNIPRFFDYPFQA-IDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244 ++ S + P+ + ++ ++ E+ A +KF K+ +Y E RD P S Sbjct: 174 ASLSVSELHLLPTIPWTSHMEAIWDPTEEGAYKTFKKFFSSKLVFYSEGRDFPDQNVHSM 233 Query: 245 LSPYLSIGVLSPRQCW----NRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPS 300 L+PYLS G +S R + N+ E L K + S++ +LIWREF +L+ YP Sbjct: 234 LAPYLSFGQISVRLMYHYLINKSTERQCSLFEKQVN---SFIRQLIWREFSYYLLYHYP- 289 Query: 301 VCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASF 360 + KP E WN + LL W++G TG+P IDA MR+L G+MHNR RM ASF Sbjct: 290 FTVYKPLNKSFEHFPWNNEEELLTVWQKGETGYPFIDAGMRELWQTGFMHNRARMAVASF 349 Query: 361 LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDP 420 LVK LL+ W+ G ++FM LLD D+A+N GWQW A +G D+ PYFRIFNP QG++FD Sbjct: 350 LVKHLLIPWQEGAKWFMDTLLDADIANNTMGWQWVAGSGADASPYFRIFNPITQGEKFDK 409 Query: 421 QGTFIRHWLPELNNVPTQYIH----APHSWLDKNDLSLN--YPLPIVDHKKACHHTLNQY 474 G +IR W+PEL ++P +YIH AP L K ++ L YPLP+VDHK A L Y Sbjct: 410 NGEYIRRWVPELRDIPNKYIHKPWEAPEHILQKANIQLGHTYPLPVVDHKAARERALCAY 469 Query: 475 YAAKK 479 + K+ Sbjct: 470 KSMKE 474 >gi|84495534|ref|ZP_00994653.1| Phr [Janibacter sp. HTCC2649] gi|84385027|gb|EAQ00907.1| Phr [Janibacter sp. HTCC2649] Length = 455 Score = 267 bits (683), Expect = 3e-69, Method: Compositional matrix adjust. Identities = 166/477 (34%), Positives = 240/477 (50%), Gaps = 46/477 (9%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 ++WLR DLR D+ AL AA + +++ ++ P W G R A+ L+ + Sbjct: 4 VLWLRRDLRRADHPALLAARDAAGGELVVAYVIDPALWAGAGAVRRA---WLAAALEATR 60 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130 G+ + D E + + + T + R+ RRD+ + L + Sbjct: 61 EEFDDGLTLLW------GDPREVVPALAKRVGATSVHVTRETTPFGRRRDETVASSLAAQ 114 Query: 131 VI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189 I + PG + N + YKV+TPF KA + P PA R Sbjct: 115 GIEWVETGTPYAVGPGLVQNLSGAPYKVFTPFAKAWRGH-------GWPDPAPR------ 161 Query: 190 PSNIP----RFFDYPFQAID--------PMFPI-GEQNALHILRKFCKEKVYYYVEQRDI 236 PS +P R QAI+ P P GE+ A+ R+FC+ + Y RD+ Sbjct: 162 PSELPLRHVRNDAKATQAIEEALAAPDLPDLPAAGERAAMARWREFCETGLTAYATDRDL 221 Query: 237 PAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMA 296 PA GTS+LSPYL +GV+ PR DL + GA +++NEL WREFY ++ Sbjct: 222 PATDGTSRLSPYLKLGVVHPRTL-------LADLAGRRGEGAQTYINELGWREFYADVLW 274 Query: 297 FYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMI 356 PS P + +++ + ++AW+ G TG+PI+DA MRQL GWMHNR+RMI Sbjct: 275 HNPSSAWKDLRDP-LAGMAYDEPADAIEAWQTGTTGYPIVDAGMRQLLAQGWMHNRVRMI 333 Query: 357 TASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGK 416 TASFL KDL V W +G +F+ L+DGD+ASNN GWQW A TG D+ PYFR+FNP QG+ Sbjct: 334 TASFLTKDLHVWWPVGARHFLELLIDGDIASNNHGWQWVAGTGTDASPYFRVFNPVTQGE 393 Query: 417 RFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQ 473 +FD G ++R W+PEL ++ + H P W + + YP IVDH + L + Sbjct: 394 KFDVDGDYVREWVPELAHLAGKAAHQP--WEHPDGYAHGYPQRIVDHAEERREALRR 448 >gi|218231250|ref|YP_002367872.1| deoxyribodipyrimidine photolyase family protein [Bacillus cereus B4264] gi|218159207|gb|ACK59199.1| deoxyribodipyrimidine photo-lyase [Bacillus cereus B4264] Length = 476 Score = 267 bits (682), Expect = 3e-69, Method: Compositional matrix adjust. Identities = 167/490 (34%), Positives = 252/490 (51%), Gaps = 42/490 (8%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 +V + D R+ DN AL+ A + + V+ V++ Q I + +++ +++ VQK Sbjct: 6 IVMFQKDFRLYDNPALFEAVQSGE--VLPVYV----QDETFSIGSAAKWWLHHAIIDVQK 59 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130 L G + + ++ + S Q +T +++N Y+ + ++ ++ ++ L+ + Sbjct: 60 QLKALGSTLIIRKGNTQEEIL----SLIKQLDITAVYWNSCYDPDRLKSNQKMKMILEDK 115 Query: 131 -VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189 +ICK F+ +LL P I YKV+TPF A + ++ P P R+ Sbjct: 116 GIICKEFNSHLLLEPWIIKKKDNTEYKVFTPFYNAFQKQVI-------PKPISRVQSIKW 168 Query: 190 PSNIPRFFDYPFQAIDPMFPIG----------EQNALHILRKFCKEKVYYYVEQRDIPAI 239 S++P + P P E+ A +KF K+ Y E RD P Sbjct: 169 GSSLPASLSVSELHLLPTIPWTSHMEAIWEPTEEGAYKTFKKFFSSKLASYSEGRDFPNQ 228 Query: 240 QGTSQLSPYLSIGVLSPRQCW----NRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLM 295 S L+PYLS G +S + + N+ E K S++ +LIWREF +L+ Sbjct: 229 NAHSMLAPYLSFGQISVKLMYHYLINKSTERQCSFFEK---QVISFIRQLIWREFSYYLL 285 Query: 296 AFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRM 355 YP KP E WNK+ LL+ W++G TG+P IDA MR+L G+MHNR RM Sbjct: 286 YHYPFTAY-KPLNKNFEHFPWNKEEELLRVWQKGETGYPFIDAGMRELWQTGFMHNRARM 344 Query: 356 ITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQG 415 ASFLVK LL+ W+ G ++FM LLD D+A+N GWQW A +G D+ PYFRIFNP QG Sbjct: 345 AVASFLVKHLLIPWQEGAKWFMDTLLDADIANNTMGWQWVAGSGADASPYFRIFNPITQG 404 Query: 416 KRFDPQGTFIRHWLPELNNVPTQYIH----APHSWLDKNDLSLN--YPLPIVDHKKACHH 469 ++FD G +IR W+PEL ++P +YIH AP L K+++ L YP PIVDHK A Sbjct: 405 EKFDKNGEYIRRWIPELRDIPNKYIHKPWEAPEHILQKSNIKLGNTYPYPIVDHKAARER 464 Query: 470 TLNQYYAAKK 479 L Y K+ Sbjct: 465 ALCAYKNMKE 474 >gi|218898230|ref|YP_002446641.1| deoxyribodipyrimidine photolyase family protein [Bacillus cereus G9842] gi|218544312|gb|ACK96706.1| deoxyribodipyrimidine photolyase family protein [Bacillus cereus G9842] Length = 476 Score = 267 bits (682), Expect = 3e-69, Method: Compositional matrix adjust. Identities = 165/485 (34%), Positives = 262/485 (54%), Gaps = 32/485 (6%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 +V + D R+ DN AL+ A + + V+ V++ Q I + +++ +++ V+K Sbjct: 6 IVMFQKDFRLYDNPALFEAVQSGE--VLPVYV----QDETFSIGSAAKWWLHHAVIDVKK 59 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130 L G + ++ + ++ Q +T +++N Y+ + ++ ++ ++ L+ + Sbjct: 60 QLEALGSTLIIRKGRTEEEILSLIE----QLDITAVYWNICYDPDRLQSNQKMKMMLEDK 115 Query: 131 -VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIR----LT 185 +ICK F+ +LL P I YKV+TPF A + ++ + V +I+ L Sbjct: 116 GIICKEFNSHLLLEPWIIKKKDNTEYKVFTPFYNAFQKQVIPKPISK--VQSIKWGSSLP 173 Query: 186 GPVTPSNIPRFFDYPFQA-IDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244 ++ S + P+ + I+ ++ E+ A +KF K+ Y E RD P S Sbjct: 174 ASLSVSELHLLPTIPWTSHIESIWEPTEEGAYKTFKKFFSSKLASYSEGRDFPNQNAHSM 233 Query: 245 LSPYLSIGVLSPRQCW----NRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPS 300 L+PYLS G +S + + N+ E L K + S++ +LIWREF +L+ YP Sbjct: 234 LAPYLSFGQISVKLMYHYLINKSTERQCSLFEKQVN---SFIRQLIWREFSYYLLYHYP- 289 Query: 301 VCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASF 360 + KP E WNK+ LL+ W++G TG+P IDA MR+L G+MHNR RM ASF Sbjct: 290 FTVYKPLNKNFEHFPWNKEEELLRVWQKGETGYPFIDAGMRELWQTGFMHNRTRMAVASF 349 Query: 361 LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDP 420 LVK LL+ W+ G ++FM LLD D+A+N GWQW A +G D+ PYFRIFNP QG++FD Sbjct: 350 LVKHLLIPWQEGAKWFMDTLLDADIANNTMGWQWVAGSGADASPYFRIFNPITQGEKFDK 409 Query: 421 QGTFIRHWLPELNNVPTQYIH----APHSWLDKNDLSLN--YPLPIVDHKKACHHTLNQY 474 G +IR W+PEL ++P +YIH AP L K ++ L YPLP+VDHK A L Y Sbjct: 410 NGEYIRKWVPELRDIPNKYIHKPWEAPEHILQKANIKLGNTYPLPVVDHKAARERALCAY 469 Query: 475 YAAKK 479 + K+ Sbjct: 470 KSMKE 474 >gi|190349137|gb|EDK41731.2| hypothetical protein PGUG_05829 [Meyerozyma guilliermondii ATCC 6260] Length = 607 Score = 267 bits (682), Expect = 4e-69, Method: Compositional matrix adjust. Identities = 158/485 (32%), Positives = 257/485 (52%), Gaps = 23/485 (4%) Query: 17 DLRITDNKALYAACH---NSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQKSLS 73 D R +DN L AA + ++ +++ + HG+S Q + SL +++ L+ Sbjct: 122 DFRQSDNTGLNAASRMAAKENLPLVCLYVLCRDDLFAHGVSGFQLEYRLRSLELLREELA 181 Query: 74 QKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRR-DKLLEKRLQHRVI 132 QK I + + + + Q +++ LF N +YE++E+RR L ++ L+ + Sbjct: 182 QKNIPLVFLNVDERKEVVPIVKEKAQQLKISHLFANIEYEVDELRRYTNLCKELLKADIS 241 Query: 133 CKSFDDSVLLPPGSILNHAL-QMYKVYTPFRKALIQNL--------VQADLRSLPVPAIR 183 + +D+ L PG+I+ + + V+TP+ +A +L V+A + + Sbjct: 242 FQPHNDTTLAVPGTIVTKSKGTQFSVFTPWYRAWCAHLNKMKDPFQVRAKPEANSDEFRQ 301 Query: 184 LTGPVTPSNIPR------FFDYPFQAIDPMFPIGEQNALHILRKFCKE-KVYYYVEQRDI 236 + S IP+ + +A + GE A L+ F ++ Y R+ Sbjct: 302 RNSHLFDSKIPQAPPGKQLTEKQKEAFEKYHKPGENAAWDDLQDFITSGRIKRYNVDRND 361 Query: 237 PAIQGTSQLSPYLSIGVLSPRQCWNRL-KEEFVDLLIKPKSGAFSWLNELIWREFYRHLM 295 P++ G S++S + + G ++ R L + + + GA W ++ WR+FYRH++ Sbjct: 362 PSVNGVSRMSVHFASGTINARTVIRSLLDHKLLRTIDSGNDGAREWARQVAWRDFYRHVL 421 Query: 296 AFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRM 355 +P +CM KPFI ++++W +S + W QG TG+PI+DAAMRQL+ +G++HNR+RM Sbjct: 422 CNWPHICMFKPFISNMDEVKWEYNSDHFERWCQGKTGYPIVDAAMRQLSEMGYLHNRVRM 481 Query: 356 ITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQG 415 + ASFL K L++DWR GE YF+ L DGD SNNGGW +++S G D PYFRIFNP Q Sbjct: 482 VVASFLSKHLMIDWREGERYFLENLADGDFPSNNGGWGFSSSVGVDPQPYFRIFNPWTQA 541 Query: 416 KRFDPQGTFIRHWLPELNNV-PTQYIHAPHSWLDKNDLSLN-YPLPIVDHKKACHHTLNQ 473 ++FD +G +IR WLPEL + + IH P+ + N YP PIVDHK A L + Sbjct: 542 EKFDKKGDYIRKWLPELREIQDVKGIHNPYENGYRQIAEKNGYPPPIVDHKTARERALER 601 Query: 474 YYAAK 478 Y AK Sbjct: 602 YKEAK 606 >gi|239817579|ref|YP_002946489.1| deoxyribodipyrimidine photo-lyase [Variovorax paradoxus S110] gi|239804156|gb|ACS21223.1| Deoxyribodipyrimidine photo-lyase [Variovorax paradoxus S110] Length = 515 Score = 267 bits (682), Expect = 4e-69, Method: Compositional matrix adjust. Identities = 177/492 (35%), Positives = 260/492 (52%), Gaps = 38/492 (7%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 L+W R DLR+ DN ALY A +V+ VF+ R+ FI SL+++++ Sbjct: 16 LMWFRRDLRVDDNAALYHALRACR-QVVCVFVFDRAILDPLPRIDRRVEFIRESLVELEE 74 Query: 71 SLSQ--KGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD-KLLEKRL 127 L G++ ++ +IE + + V +F NR E + + RD ++L Sbjct: 75 ELRALSGGLIVRHAH------AIEEIPALAHSLDVQAVFANRDDEPDALARDAQVLGALA 128 Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187 V ++ DS + +LN Q Y V+TP+++A + + L+ PV + Sbjct: 129 NAGVSFYTYKDSTVFERDELLNKTGQPYTVFTPYKRAWLAKVDAFFLKPYPVRSHADALA 188 Query: 188 V------TPSNIPRFFDYPF---QAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPA 238 TP+ P D F + P G Q A + F +++ Y R+ PA Sbjct: 189 PPPAAHRTPA--PSLEDLGFGRSNLSELGIPTGSQGAAALFEDFF-QRIDRYDAARNFPA 245 Query: 239 IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFY 298 ++G S L +L G +S RQ + L ++ +GA +WL ELIWREFY ++ + Sbjct: 246 VRGPSYLGVHLRFGTVSIRQLAGVAHQ----LFLQGDAGAAAWLGELIWREFYFQILVHF 301 Query: 299 PSVCMG---KPFIPWTEKIEWNKDSH---LLQAWKQGYTGFPIIDAAMRQLNTIGWMHNR 352 P V G K F P +KI+W+ H L +AW QG TG+P++DAAM Q+N G+MHNR Sbjct: 302 PHVHSGGESKSFRPEYDKIQWHHGKHADQLFEAWCQGRTGYPLVDAAMLQINQSGYMHNR 361 Query: 353 LRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPT 412 LRM+ ASFL KDL +DWR GE YF L D +LASNNG WQWA+S+G D+ P+FRIFNP Sbjct: 362 LRMVVASFLCKDLGLDWRRGERYFALHLNDFELASNNGNWQWASSSGCDAQPWFRIFNPV 421 Query: 413 IQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSW----LDKNDLSLN--YPLPIVDHKKA 466 Q +RFDP+G FIR +LP+L + IHAP + L+ + L YP P+VDH +A Sbjct: 422 TQSERFDPEGKFIRRYLPQLAGLSNAAIHAPWTASPVELEAAGIKLGETYPRPVVDHAEA 481 Query: 467 CHHTLNQYYAAK 478 T+ +Y A + Sbjct: 482 REQTMRRYAAVR 493 >gi|326332769|ref|ZP_08199030.1| deoxyribodipyrimidine photolyase [Nocardioidaceae bacterium Broad-1] gi|325949468|gb|EGD41547.1| deoxyribodipyrimidine photolyase [Nocardioidaceae bacterium Broad-1] Length = 446 Score = 267 bits (682), Expect = 4e-69, Method: Compositional matrix adjust. Identities = 163/480 (33%), Positives = 239/480 (49%), Gaps = 40/480 (8%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M+ L+W R DLR+ D+ AL AA ++ +V+ +F+ P R G S R+ + ASL Sbjct: 1 MTTSLMWFRRDLRLGDHPALQAAA--AEGQVVPLFVLDP---RLAG-SGRRWERLLASLA 54 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 +++ ++ Q D E + + +++ + + RRD +E+R Sbjct: 55 ALREETDGALVIRQ-------GDPAEVVADVAAEAGASQVHVSTETTPYGRRRDAAVEQR 107 Query: 127 LQHRVICKSFDDS-VLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185 L I S + PG + N + Y+V+TPF +A ++ +A P + Sbjct: 108 LAAAGIGLVGTGSPYAVTPGRVRNASGAPYRVFTPFLRAWREHGWRAPAGD---PEVEWM 164 Query: 186 GPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245 + +P D GE+ ALH FC E + Y E RD P + TS+L Sbjct: 165 TKLESDPLPSHSDQE---------AGERAALHRWEDFCAEDLAGYAESRDRPDLDRTSRL 215 Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFS----WLNELIWREFYRHLMAFYPSV 301 S L G + PR DL + ++ EL WREFY ++ P Sbjct: 216 SVALKYGEIHPRTL-------LADLGTHGTGASGEDVERFVAELAWREFYADVLWHDPGS 268 Query: 302 CMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFL 361 + + + + D LL+AWK G TG+P +DA MRQL GWMHNR+RM+ ASFL Sbjct: 269 AW-RDLKDGLDGMRYEDDPELLEAWKSGTTGYPFVDAGMRQLLAEGWMHNRVRMVVASFL 327 Query: 362 VKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQ 421 VKDL + W +G +FM LLDGD+ASN+ GWQWAA TG D+ PYFR+FNP QG RFDPQ Sbjct: 328 VKDLHMWWPVGARHFMDHLLDGDMASNSHGWQWAAGTGTDAAPYFRVFNPVTQGIRFDPQ 387 Query: 422 GTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481 G ++R W+PEL ++P H P W L+ YP P+VDH + L++ K+ + Sbjct: 388 GDYVRRWVPELRHLPGAAAHEP--WRHSEGLAHGYPEPVVDHAEERREALDRLAELKEST 445 >gi|300704913|ref|YP_003746516.1| deoxyribodipyrimidine photolyase [Ralstonia solanacearum CFBP2957] gi|299072577|emb|CBJ43927.1| deoxyribodipyrimidine photolyase (photoreactivation), FAD-binding [Ralstonia solanacearum CFBP2957] Length = 522 Score = 266 bits (681), Expect = 4e-69, Method: Compositional matrix adjust. Identities = 179/482 (37%), Positives = 246/482 (51%), Gaps = 47/482 (9%) Query: 11 LVWLRNDLRITDNKAL-YAACHNSDAKVIAVF---IATPEQWRQHGISA-RQSHFIYASL 65 LVW R DLR D+ AL YA H + VF I P R G+ A R+ FI A++ Sbjct: 28 LVWFRRDLRHIDHAALHYALRHCREVFCAFVFDRGILDPLLAR--GLRADRRVEFIRAAV 85 Query: 66 LQVQKSLSQKG---IVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKL 122 ++ +L + G IV D + + S Q V +F N E + RD Sbjct: 86 EALRSALREAGGELIVLH-------DHAHHAIPSLAQQLGVEAVFANHDEEPAALARDAA 138 Query: 123 LEKRLQHRVICKSFD--DSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPV- 179 + L R C FD D V+ +LN + Y V+TP++ A + + DLR+ P+ Sbjct: 139 VRDALA-RQPCAWFDFKDQVIFERAEVLNGQGKPYGVFTPYKNAWLAAVSPFDLRAYPIE 197 Query: 180 PAIRLTG-------PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVE 232 P + P TPS F ++ + P G A +L F Y+ Sbjct: 198 PHLHALARPPQGLAPATPSLEAMGFARSNLSVIAL-PTGMSGAEALLDDFATRMDDYHA- 255 Query: 233 QRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYR 292 +RD PA++G S LS +L G +S R R ++ GA +WL+ELIWR+FY Sbjct: 256 RRDYPAVRGPSYLSTHLRFGTVSIRTLAARAHSA----MLHGSRGAATWLSELIWRDFYF 311 Query: 293 HLMAFYPSVCMGKPFIPWTEKIEW---NKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWM 349 ++ P + G F P ++I W AW+ TG+P++DAAM Q+ G+M Sbjct: 312 MILHHRPDLAEGTSFRPEFDRIRWVGGETGDVRFAAWRDARTGYPLVDAAMLQIRQSGYM 371 Query: 350 HNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIF 409 HNRLRM+TASFL+KDL VDWR GE +F L D D A+NNGGWQWAAS+G D+ P+FRIF Sbjct: 372 HNRLRMVTASFLIKDLGVDWRRGEHHFADALNDFDFAANNGGWQWAASSGCDAQPWFRIF 431 Query: 410 NPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND--------LSLNYPLPIV 461 NP Q ++FDPQG FIR +LP+L +P +Y+HAP W D L YP PIV Sbjct: 432 NPVTQSEKFDPQGHFIRKYLPQLAKLPDRYLHAP--WTAPADVLKAAGVALGATYPRPIV 489 Query: 462 DH 463 +H Sbjct: 490 EH 491 >gi|330951089|gb|EGH51349.1| deoxyribodipyrimidine photolyase [Pseudomonas syringae Cit 7] Length = 367 Score = 266 bits (681), Expect = 5e-69, Method: Compositional matrix adjust. Identities = 141/369 (38%), Positives = 206/369 (55%), Gaps = 6/369 (1%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 + L+WLR+DLR DN AL AA +AV++ +P QWR H + + F +L+++ Sbjct: 1 MQLIWLRSDLRAQDNTALTAAMER--GPTLAVYLLSPAQWRSHDDADCKVDFWLRNLVEL 58 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128 +K+L + + + +D + E L C Q +V L N++Y INE RRD+ ++K ++ Sbjct: 59 EKALGELNVPLLIREADTWDQAPEVLAKLCTQFKVEGLHLNQEYGINETRRDQAVQKAME 118 Query: 129 HR-VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187 V S+ D +L PGSIL ++V+T F+K L +A + P + Sbjct: 119 KAGVHFNSYLDQLLFKPGSILTKTGNYFQVFTQFKKVCYTRLHEAMPHPVRTPKAQPAQS 178 Query: 188 VTPSNIP---RFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244 + IP + F P +A+ ++P GE A + F E++ YY ++RD P GTSQ Sbjct: 179 IKSDPIPDQVKGFATPAKALRELWPAGEAEARRRMDAFADEQISYYKDERDFPTKPGTSQ 238 Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304 LS YL+ GV+SPRQC + G +W+NEL+WREFY+H + YP V Sbjct: 239 LSAYLAAGVISPRQCLHAALASNQGEFETGNVGTVTWINELLWREFYKHTLVGYPRVSRH 298 Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364 + F P TE ++W L+AW++ TG PIIDAAMRQL GWMHNRLRM+ A FL K+ Sbjct: 299 RAFRPETEALKWRDAPEELRAWQEARTGLPIIDAAMRQLLETGWMHNRLRMVVAMFLTKN 358 Query: 365 LLVDWRIGE 373 LL+DWR GE Sbjct: 359 LLIDWREGE 367 >gi|229145749|ref|ZP_04274130.1| Deoxyribodipyrimidine photolyase [Bacillus cereus BDRD-ST24] gi|296503680|ref|YP_003665380.1| deoxyribodipyrimidine photolyase [Bacillus thuringiensis BMB171] gi|228637730|gb|EEK94179.1| Deoxyribodipyrimidine photolyase [Bacillus cereus BDRD-ST24] gi|296324732|gb|ADH07660.1| deoxyribodipyrimidine photolyase [Bacillus thuringiensis BMB171] Length = 476 Score = 266 bits (680), Expect = 5e-69, Method: Compositional matrix adjust. Identities = 166/490 (33%), Positives = 257/490 (52%), Gaps = 42/490 (8%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 +V + D R+ DN AL+ A + + V+ V+I Q I + +++ +++ V+K Sbjct: 6 IVMFQKDFRLYDNPALFEAVQSGE--VLPVYI----QDETFSIGSASKWWLHHAVIDVKK 59 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130 L G + ++ + ++ Q +T +++N Y+ + ++ ++ ++ L+ + Sbjct: 60 QLEALGSTLIIRKGRTEEEILSLIE----QLDITAVYWNICYDPDRLQSNQKMKMMLEDK 115 Query: 131 -VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189 +ICK F+ +LL P I YKV+TPF A + ++ P P R+ Sbjct: 116 GIICKEFNSHLLLEPWIIKKKDNTEYKVFTPFYNAFQKQVI-------PKPFSRVQSIKW 168 Query: 190 PSNIPRFFDYPFQAIDPMFPIG----------EQNALHILRKFCKEKVYYYVEQRDIPAI 239 +++P + P+ P E+ A +KF K+ Y E RD P Sbjct: 169 GNSLPASLSVSELQLLPIIPWTSHMEVIWDPTEEGAYKTFKKFFSSKLVSYSEGRDFPGQ 228 Query: 240 QGTSQLSPYLSIGVLSPRQCW----NRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLM 295 S L+PYLS G +S + + N+ E L K + S++ +LIWREF +L+ Sbjct: 229 NVHSMLAPYLSFGQISVKLMFHYLINKSTERQCSLFEKQVN---SFIRQLIWREFSYYLL 285 Query: 296 AFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRM 355 YP + KP E W+K+ LL+ W++G TG+P IDA MR+L G+MHNR RM Sbjct: 286 YHYP-FTVYKPLNKSFENFPWDKEEELLRVWQKGKTGYPFIDAGMRELWQTGFMHNRARM 344 Query: 356 ITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQG 415 ASFLVK LL+ W+ G ++FM LLD D+A+N GWQW A +G D+ PYFRIFNP QG Sbjct: 345 AVASFLVKHLLIPWQEGAKWFMDTLLDADIANNTMGWQWVAGSGADASPYFRIFNPITQG 404 Query: 416 KRFDPQGTFIRHWLPELNNVPTQYIH----APHSWLDKNDLSLN--YPLPIVDHKKACHH 469 ++FD G +IR W+PEL ++P +YIH AP L K+++ L YP PIVDHK A Sbjct: 405 EKFDKNGEYIRRWVPELRDIPNKYIHKPWEAPEHILQKSNIKLGDTYPFPIVDHKAARER 464 Query: 470 TLNQYYAAKK 479 L Y + KK Sbjct: 465 ALCAYKSMKK 474 >gi|152981216|ref|YP_001354641.1| deoxyribodipyrimidine photo-lyase [Janthinobacterium sp. Marseille] gi|151281293|gb|ABR89703.1| deoxyribodipyrimidine photo-lyase [Janthinobacterium sp. Marseille] Length = 495 Score = 266 bits (680), Expect = 5e-69, Method: Compositional matrix adjust. Identities = 169/494 (34%), Positives = 257/494 (52%), Gaps = 33/494 (6%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 LVW R DLR D+ AL+ A +V FI + + R+ FI+ASL ++ Sbjct: 8 LVWFRRDLRSFDHAALHHALRQG-RQVYCAFIFDRAILDELPSTDRRVEFIHASLQELDT 66 Query: 71 SLSQ--KGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL- 127 +L G++ ++ + + + + V +F N YE + RD + L Sbjct: 67 ALRALGGGLIVRHARAE------QAIPQLAAELGVDAVFCNHDYEPQAIARDGAVAAALA 120 Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQ----NLVQADLRSLPVPAIR 183 +++ D V+ +L+ + + + V+TP++ A ++ L AD+ + + +R Sbjct: 121 TDGRKLQTYKDHVIFEKDEVLSQSGKPFSVFTPYKNAWLKKLHTELAPADMPAYEIDTLR 180 Query: 184 LTGPVTPSN---IPRFFDYPFQAIDPM---FPIGEQNALHILRKFCKEKVYYYVEQRDIP 237 P+N IP + F+ + P G Q + F +++ Y RD P Sbjct: 181 AHFAPLPANLSGIPALSELGFEKTNLTELNIPTGMQGGQALFDDFI-DRMPDYDSTRDFP 239 Query: 238 AIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAF 297 A++G S LS +L G +S R R + + +GA WL+EL+WR+FY ++ Sbjct: 240 AVKGPSYLSVHLRFGTVSIRALVRRALDAM--RIGAGGTGAAVWLSELVWRDFYFMILYQ 297 Query: 298 YPSVCMGKPFIPWTEKIEWNKDSH---LLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLR 354 +P V + F P + I W H L QAW G TG+P++DAAM QLN G+MHNRLR Sbjct: 298 HPHV-RERAFKPDYDAIIWENGPHAEELFQAWCDGRTGYPLVDAAMAQLNQTGYMHNRLR 356 Query: 355 MITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQ 414 M+TASFL+KDL +DWR GE YF +L D DLA+NNGGWQWA+S+G D+ PYFRIFNP Q Sbjct: 357 MVTASFLIKDLGIDWRWGERYFAEKLNDFDLAANNGGWQWASSSGCDAQPYFRIFNPLTQ 416 Query: 415 GKRFDPQGTFIRHWLPELNNVPTQYIHAP------HSWLDKNDLSLNYPLPIVDHKKACH 468 ++FDP G FIR +LP+L + + IHAP + L +YP P++ H +A Sbjct: 417 SEKFDPDGKFIRRYLPQLGKLSGKQIHAPWRVPALELQMAGITLGRDYPHPLLQHDEARA 476 Query: 469 HTLNQYYAAKKQSL 482 TL +Y KK ++ Sbjct: 477 RTLLRYAVVKKVTV 490 >gi|254238599|ref|ZP_04931922.1| deoxyribodipyrimidine photolyase [Pseudomonas aeruginosa C3719] gi|126170530|gb|EAZ56041.1| deoxyribodipyrimidine photolyase [Pseudomonas aeruginosa C3719] Length = 394 Score = 266 bits (680), Expect = 6e-69, Method: Compositional matrix adjust. Identities = 146/387 (37%), Positives = 215/387 (55%), Gaps = 20/387 (5%) Query: 5 TAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYAS 64 + ++L+W R DLR TDN AL AA +A+++ +P QWR+H + + F + Sbjct: 2 NGLPMNLIWFRCDLRTTDNSALLAAADGR--PCVALYLLSPAQWREHDDAPCKVDFWLRN 59 Query: 65 LLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLE 124 L ++Q+ L+ I C ++ + E + C + V + N++Y +NE RRD+ + Sbjct: 60 LGELQRQLAALNIPLLVRDCGHWRQAPEVIGRLCRELGVGAVHVNQEYGVNEERRDQAVG 119 Query: 125 KRLQHRVIC-KSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIR 183 +RL+ + + S D + PGS+L ++V++ FRK + L QA +P +R Sbjct: 120 QRLREQGVAFHSHLDQLFFAPGSVLTRTGGYFQVFSQFRKVCHERLYQA------LPGVR 173 Query: 184 ----------LTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQ 233 L P +P F P ++ ++P GE+ A LR F + + Y E+ Sbjct: 174 PRPQPQPPHALASDPLPDAVP-AFPRPADSLRRLWPAGEEVAQERLRDFADQHLADYHER 232 Query: 234 RDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRH 293 RD PA+ GTSQLSPYL+ GVLSPRQC + + GA +W+NEL+WREFY+H Sbjct: 233 RDFPALPGTSQLSPYLAAGVLSPRQCLDAALVANRGEFSGGQQGAATWINELLWREFYKH 292 Query: 294 LMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRL 353 ++ YP V +PF TE + W + L+AW+QG TG PIIDAAM QL GWMHNRL Sbjct: 293 ILVGYPRVSRHRPFREETEALRWRQAPAELEAWQQGRTGIPIIDAAMSQLLATGWMHNRL 352 Query: 354 RMITASFLVKDLLVDWRIGEEYFMSQL 380 RM+ A FL K+LL+DWR GE +FM L Sbjct: 353 RMVVAMFLSKNLLIDWREGERWFMRHL 379 >gi|228953466|ref|ZP_04115511.1| Deoxyribodipyrimidine photolyase [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228806205|gb|EEM52779.1| Deoxyribodipyrimidine photolyase [Bacillus thuringiensis serovar kurstaki str. T03a001] Length = 476 Score = 266 bits (680), Expect = 6e-69, Method: Compositional matrix adjust. Identities = 165/486 (33%), Positives = 264/486 (54%), Gaps = 34/486 (6%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 +V + D R+ DN AL+ A + + V+ V++ Q I + +++ +++ VQK Sbjct: 6 IVMFQKDFRLYDNPALFEAVQSGE--VLPVYV----QDETFSIGSAAKWWLHHAIIDVQK 59 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130 L G + + ++ + S Q +T +++N Y+ + ++ ++ ++ L+ + Sbjct: 60 QLKALGSTLIIRKGNTQEEIL----SLIKQLDITAVYWNSCYDPDRLKSNQKMKMILEDK 115 Query: 131 -VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIR----LT 185 +ICK F+ +LL P I YKV+TPF A + ++ + V +I+ L Sbjct: 116 GIICKEFNSHLLLEPWIIKKKDNTEYKVFTPFYNAFQKQVIPKPINR--VQSIKWGNSLP 173 Query: 186 GPVTPSNIPRFFDYPFQA-IDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244 ++ S + P+ + ++ ++ E+ A +KF K+ Y E RD P S Sbjct: 174 ASLSVSELHLLPTIPWTSHMEAIWEPTEEGAYKTFKKFFSSKLASYSEGRDFPNQNVHSM 233 Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAF-----SWLNELIWREFYRHLMAFYP 299 L+PYLS G +S + ++ L ++ + +S F S++ +LIWREF +L+ YP Sbjct: 234 LAPYLSFGQISVKLMFHYL----INKSTERQSSLFEKQVNSFIRQLIWREFSYYLLYHYP 289 Query: 300 SVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITAS 359 + KP E WNK+ LL+ W++G TG+P IDA MR+L G+MHNR RM AS Sbjct: 290 -FTVYKPLNKSFEHFPWNKEEELLRVWQKGETGYPFIDAGMRELWQTGFMHNRARMAVAS 348 Query: 360 FLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFD 419 FLVK LL+ W+ G ++FM LLD D+A+N GWQW A +G D+ PYFRIFNP QG++FD Sbjct: 349 FLVKHLLIPWQEGAKWFMDTLLDADIANNTMGWQWVAGSGADASPYFRIFNPITQGEKFD 408 Query: 420 PQGTFIRHWLPELNNVPTQYIH----APHSWLDKNDLSLN--YPLPIVDHKKACHHTLNQ 473 G +IR W+PEL ++P +YIH AP L K+++ L YP PIVDHK A L Sbjct: 409 KNGEYIRRWVPELRDIPNKYIHKPWEAPEHILQKSNIKLGNTYPYPIVDHKAARERALCA 468 Query: 474 YYAAKK 479 Y + K+ Sbjct: 469 YKSMKE 474 >gi|229156755|ref|ZP_04284842.1| Deoxyribodipyrimidine photolyase [Bacillus cereus ATCC 4342] gi|228626675|gb|EEK83415.1| Deoxyribodipyrimidine photolyase [Bacillus cereus ATCC 4342] Length = 476 Score = 266 bits (680), Expect = 6e-69, Method: Compositional matrix adjust. Identities = 164/483 (33%), Positives = 259/483 (53%), Gaps = 28/483 (5%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 ++ + D R+ DN AL+ A + + V+ V++ Q I + +++ +++ VQK Sbjct: 6 IMMFQKDFRLYDNPALFEAAQSGE--VVPVYV----QDETFSIGSASKWWLHHAIIDVQK 59 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130 L G + + ++ + ++ Q +T +++N Y+ + ++ ++ ++ L+ + Sbjct: 60 QLEALGSTLIIRKGNTQEEILSLIE----QLNITAVYWNSCYDPDRLKSNQKMKIVLEDK 115 Query: 131 -VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLP--VPAIRLTGP 187 +ICK F+ +LL P I YKV+TPF A + ++ + + L Sbjct: 116 GIICKEFNSHLLLEPWIIKKKDNTEYKVFTPFYNAFQKQVIPKPISKVQRIKGGSSLPAS 175 Query: 188 VTPSNIPRFFDYPFQA-IDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246 ++ S + P+ + I+ ++ E+ A +KF K+ Y E RD P S L+ Sbjct: 176 LSVSELHLLPTIPWTSHIESIWNPTEEGAYKTCKKFFFSKLASYSEGRDFPNENAHSMLA 235 Query: 247 PYLSIGVLSPRQCW----NRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVC 302 PYLS G +S R + N+ E L K + S++ +LIWREF +L+ YP Sbjct: 236 PYLSFGQISVRWMYHYLINKSTERQCSLFEKQVN---SFIRQLIWREFSYYLLYHYP-FT 291 Query: 303 MGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLV 362 + KP E WNK+ LL W++G TG+P IDA MR+L G+MHNR RM ASFLV Sbjct: 292 VYKPLNKNFEHFPWNKEEELLTVWQKGETGYPFIDAGMRELWQTGFMHNRARMAVASFLV 351 Query: 363 KDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQG 422 K LL+ W+ G ++FM LLD D+A+N GWQW A +G D+ PYFRIFNP QG++FD G Sbjct: 352 KHLLIPWQEGAKWFMDTLLDADIANNTMGWQWVAGSGADASPYFRIFNPITQGEKFDKDG 411 Query: 423 TFIRHWLPELNNVPTQYIH----APHSWLDKNDLSLN--YPLPIVDHKKACHHTLNQYYA 476 +IR W+PEL ++P +YIH AP L K ++ L YPLP+VDHK A L Y + Sbjct: 412 EYIRKWVPELRDMPNKYIHKPWEAPEHILQKANIKLGDTYPLPVVDHKAARERALCAYKS 471 Query: 477 AKK 479 K+ Sbjct: 472 MKE 474 >gi|330817717|ref|YP_004361422.1| Deoxyribodipyrimidine photolyase [Burkholderia gladioli BSR3] gi|327370110|gb|AEA61466.1| Deoxyribodipyrimidine photolyase [Burkholderia gladioli BSR3] Length = 487 Score = 266 bits (680), Expect = 6e-69, Method: Compositional matrix adjust. Identities = 170/504 (33%), Positives = 252/504 (50%), Gaps = 42/504 (8%) Query: 1 MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHF 60 M A ++ +VW R+DLR+TDN AL A S + V++ E R G +AR + Sbjct: 1 MPAESSAQAAIVWFRDDLRLTDNPALARAAE-SGRPFVCVYVLEREGTRPLGGAAR--WW 57 Query: 61 IYASLLQVQKSLSQKG---IVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEV 117 + +L + SL+ G +V + + E LD+ + ++NR+Y+ Sbjct: 58 LDGALRSLDASLAGHGGRLLVLEGDERETIAALAEELDAGAV-------YWNRRYDGIAR 110 Query: 118 RRDKLLEKRLQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPF-RKALIQNLVQADL- 174 D L++ L+ I +SF+ ++L P + + ++V+T + R AL V A L Sbjct: 111 ETDGALKRSLKEAGIEAESFNGALLREPWELQTGSGGAFQVFTAYWRAALKSGDVSAPLA 170 Query: 175 -------RSLPVPAIRLTGPVTPSNI-PRFFDYPFQAIDPMFPIGEQNALHILRKFCKEK 226 +LP R + + P D+ + P E+ AL +L +F +K Sbjct: 171 EPSTWRFHTLPASLARRALKIDALGLLPTRPDWAGGLREAWVPT-EEAALELLERFLDKK 229 Query: 227 VYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELI 286 + Y E RD P TS+LSPYL G LS RQ W+ + + +++EL Sbjct: 230 IRGYGEARDRPDRPATSRLSPYLRFGQLSARQVWHAAMAAAREGGAAVAADIEKFVSELG 289 Query: 287 WREFYRHLMAFYPSVCMGKPFIPWTEKIE---WNKDSHLLQAWKQGYTGFPIIDAAMRQL 343 WREF L+ +P + P + E+ + W D AW +G TG+P++DA MR+L Sbjct: 290 WREFDTSLLYHFPEL----PTRNYRERFDAMPWRDDEAGFTAWCRGRTGYPLVDAGMREL 345 Query: 344 NTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSV 403 T GWMHNR+RM+ ASFL+K LL+DWR GE +F L+D D+A+N+ WQW A G D+ Sbjct: 346 WTTGWMHNRVRMVVASFLIKHLLIDWRAGERWFWDTLVDADIANNSANWQWVAGCGADAA 405 Query: 404 PYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKN--------DLSLN 455 PYFRIFNP QG++FDP+G ++R W+PEL +P IH P W K L Sbjct: 406 PYFRIFNPVTQGRKFDPEGDYVRRWVPELARLPADAIHEP--WRAKPIVLEAAGVVLGQT 463 Query: 456 YPLPIVDHKKACHHTLNQYYAAKK 479 YP PIVDH A L K+ Sbjct: 464 YPEPIVDHDAARQRALGALELTKR 487 >gi|118590290|ref|ZP_01547693.1| DNA photolyase [Stappia aggregata IAM 12614] gi|118437262|gb|EAV43900.1| DNA photolyase [Stappia aggregata IAM 12614] Length = 478 Score = 266 bits (680), Expect = 6e-69, Method: Compositional matrix adjust. Identities = 170/487 (34%), Positives = 252/487 (51%), Gaps = 36/487 (7%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATP--EQWRQHGISARQSHFIYASLLQV 68 LVW R DLRI DN AL+ A + +V+ VFI P + H + +++ SL + Sbjct: 4 LVWFRQDLRIKDNPALFEAAKS--GRVLPVFILEPADKTGETHPLGGASRWWLHHSLKAL 61 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128 Q+ L G+V + + + V +F+NR YE + RD L+ L+ Sbjct: 62 QQDLP--GLVLLKGDARHL------IPEVAKRAGVEAVFWNRCYEPYAIERDTDLKSSLK 113 Query: 129 HRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPA-IRLTG 186 KSF S+L P I + YKVY+PF KA Q ++ D +LP P + + Sbjct: 114 DDGYEVKSFKASLLYEPWEIETQSGGPYKVYSPFWKAARQ--IEID-DALPAPEKLDIAD 170 Query: 187 PVTPSNIPRFFDYP-----FQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQG 241 + F P + + ++ GE A L F +E + Y + R+ P + Sbjct: 171 YDGGEELESFDLLPKKPNWAKGWEDLWTPGEAGASERLGSFLEEGLKGYGKLRNRPDLPN 230 Query: 242 TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSV 301 S+LSP+L G +SPRQ W+ ++ +D +L+E+ WREF +L+ +P + Sbjct: 231 VSRLSPHLHFGEISPRQIWH-ATQDVMDRRSSLGDDGMKFLSEIAWREFSHNLLYHFPKL 289 Query: 302 CMGKPFIPWTEKIE---WNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITA 358 P W + W + L+ W++G TG+PI+DA MR+L G+MHNR+RMI A Sbjct: 290 ----PSENWRSTFDEYPWKEPDGELEKWQKGQTGYPIVDAGMRELWQTGYMHNRVRMIAA 345 Query: 359 SFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRF 418 SFL+K L + WR GE +F L+D DLA+N+ GWQW A +G D+ PYFR+FNP QG++F Sbjct: 346 SFLIKHLRLHWRHGEAWFRDTLVDADLANNSAGWQWVAGSGADAAPYFRVFNPITQGEKF 405 Query: 419 DPQGTFIRHWLPELNNVPTQYI----HAPHSWLDKNDLSLN--YPLPIVDHKKACHHTLN 472 DP G +IR W+PEL + T+Y+ AP L K ++L YP P+VDH A L Sbjct: 406 DPDGNYIRQWVPELRELDTRYLFAPFDAPAEALKKARITLGDTYPKPLVDHASAREAALE 465 Query: 473 QYYAAKK 479 Y A K+ Sbjct: 466 GYEAVKQ 472 >gi|294500818|ref|YP_003564518.1| FAD binding domain of DNA photolyase [Bacillus megaterium QM B1551] gi|294350755|gb|ADE71084.1| FAD binding domain of DNA photolyase [Bacillus megaterium QM B1551] Length = 475 Score = 266 bits (680), Expect = 6e-69, Method: Compositional matrix adjust. Identities = 164/485 (33%), Positives = 265/485 (54%), Gaps = 40/485 (8%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 +VW+R D R+ DN AL+ A + V+ V+I + + + + + +++ +L + Sbjct: 6 IVWIRKDFRLVDNPALFHAA--KEGMVVPVYIH--DDYEESSMGSASKWWLHHALNDFKT 61 Query: 71 SLSQ-KGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH 129 S+ + +G + Q N D ++ L + +++N +YE + ++RDK L+ Sbjct: 62 SIKKIEGTLIV--QKGNPKDVLQKL---LHETNAQDIYWNSRYEPHALKRDKELQAFFSE 116 Query: 130 RVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLR--------SLPVP 180 + I ++F+ +L P I YKV+T + KA ++ V + ++ S PV Sbjct: 117 QQINIRTFEGFLLHEPWKITKENGDPYKVFTAYYKASQKHSVSSAVKKVTSIQASSKPVE 176 Query: 181 AIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ 240 ++ ++ +IP +D + I + E+ A+ + + F K K+ +Y + RD PA Sbjct: 177 SLSVSDLDLLPSIP--WD---ETIKSTWEATEKGAIDVFKTFLKNKLLHYEKGRDFPAEA 231 Query: 241 GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFS-----WLNELIWREFYRHLM 295 S LSPYL+ G LS R ++ L+ + K S AF ++ +LIWR+F L+ Sbjct: 232 LNSFLSPYLATGQLSARVLYHYLRTK----AEKVGSDAFEQQAEMFIRQLIWRDFAYQLL 287 Query: 296 AFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRM 355 +P +P ++ +W + LQAWK G TG+P++DA MR+L G+MHNR+RM Sbjct: 288 YHFPHTTT-EPLNEKFKQFQWADGNEELQAWKNGKTGYPLVDAGMRELWETGFMHNRVRM 346 Query: 356 ITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQG 415 + ASFLVK LL+ W+ G +F L+D DLA+N GWQW A +G D+ PYFRIFNP Q Sbjct: 347 VAASFLVKHLLIHWKHGANWFFDTLVDADLANNTMGWQWVAGSGADAAPYFRIFNPITQS 406 Query: 416 KRFDPQGTFIRHWLPELNNVPTQYIH----APHSWLDKNDLSLN--YPLPIVDHKKACHH 469 ++FD +G +I+ WLPEL ++P+ YIH AP L+K +++LN YP PIVDHK A Sbjct: 407 EKFDKEGEYIKKWLPELKDIPSSYIHKPWEAPADVLEKANVTLNKTYPAPIVDHKAARER 466 Query: 470 TLNQY 474 L Y Sbjct: 467 ALEHY 471 >gi|114797406|ref|YP_760502.1| deoxyribodipyrimidine photolyase family protein [Hyphomonas neptunium ATCC 15444] gi|114737580|gb|ABI75705.1| deoxyribodipyrimidine photolyase family protein [Hyphomonas neptunium ATCC 15444] Length = 485 Score = 266 bits (679), Expect = 6e-69, Method: Compositional matrix adjust. Identities = 169/500 (33%), Positives = 256/500 (51%), Gaps = 44/500 (8%) Query: 5 TAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYAS 64 ++ S ++W R DLR+TDN AL AA NS +I V++ R+ G A + AS Sbjct: 2 SSASPAILWFREDLRLTDNPALNAAV-NSGRPLICVYL------RETGAGAPR-EMGGAS 53 Query: 65 LLQVQKSLSQKGIVFQYHQCS---NFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDK 121 + KSL+ G + + + + + + +F+NR+Y + E D Sbjct: 54 RWWLNKSLASLGASLEAIGGKLTLRTGPAEKIIPALVEETGAAAVFWNRRYGLPERETDA 113 Query: 122 LLEKRLQ-HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRS---L 177 ++K L+ + V C+SF+ +L+ P + + YKV+TPF +AL QA + + Sbjct: 114 AIKKTLKDNGVECQSFNGRLLMEPWDLKTGSGGWYKVFTPFWRAL-----QAQYKPPAFI 168 Query: 178 PVPAIRLTGPVTPSNIPRFFDYPFQ-----AIDPMFPIGEQNALHILRKFCKEKVYYYVE 232 P P N+ + +P + I + GE A L F V YV Sbjct: 169 PSPKKIAGASAETENLKDWGLHPEKPDWSGGIAAAWEPGEVGAQKRLDAFLDGPVSDYVG 228 Query: 233 QRDIPAIQ-GTSQLSPYLSIGVLSPRQCWN----RLKEEFVDLLIKPKSGAFSWLNELIW 287 R++P + GTS+LSP+L G + P Q W RL+ + D + A +L+E+ W Sbjct: 229 TRNLPGVSTGTSRLSPHLRFGEIGPAQIWRAVRARLEAQQAD-----EDSARVFLSEIAW 283 Query: 288 REFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIG 347 REF L+ + P++ + + ++ W KD AW +G TG+PI+DA MR+L G Sbjct: 284 REFSYTLLYYNPALAT-ENYNSNFNQMAWRKDDSGFAAWSRGQTGYPIVDAGMRELWHTG 342 Query: 348 WMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFR 407 WMHNR+RMI ASFL K LL+ W+ GE++F L+D D A+N WQW A +G D+ PYFR Sbjct: 343 WMHNRVRMIVASFLTKHLLLPWQQGEQWFWDTLVDADPAANPASWQWTAGSGADAAPYFR 402 Query: 408 IFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND-------LSLNYPLPI 460 +FNP QG++FD G ++RHW PEL +P +Y+HAP D L +YP PI Sbjct: 403 VFNPISQGQKFDEDGAYVRHWCPELAGLPDKYLHAPFE-ADAQTLKRARVMLGTDYPEPI 461 Query: 461 VDHKKACHHTLNQYYAAKKQ 480 +DH L+ Y A K++ Sbjct: 462 IDHPVGRQRALDAYKAMKEE 481 >gi|239994036|ref|ZP_04714560.1| DNA photolyase [Alteromonas macleodii ATCC 27126] Length = 467 Score = 266 bits (679), Expect = 7e-69, Method: Compositional matrix adjust. Identities = 170/486 (34%), Positives = 256/486 (52%), Gaps = 37/486 (7%) Query: 12 VWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQKS 71 +W R DLR+ DN AL AAC I ++ T R+ G +++ +++ SL + K Sbjct: 1 MWFRQDLRVKDNPALNAACDMGKIVPIYIYDDTAPNGREPGGASKW--WLHHSLSSLNKR 58 Query: 72 LSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL-QHR 130 L+ +F+ D + +F+NR YE ++ RDK ++K L +H Sbjct: 59 LNGHLQIFK-------GDPQTLIPKLMKSFNAKGIFWNRCYEPWQINRDKTIKKTLIEHE 111 Query: 131 VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLP-VPAIRLT---- 185 S + S+L P +L Y+V+TP+ K + +Q + P P R+T Sbjct: 112 YEAHSCNGSLLWEPMKVLKKDGTPYRVFTPYYK---KGCLQVEEPRYPKAPPARITYADV 168 Query: 186 -----GPVTPSNIPRF-FDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAI 239 G + +P +D I+ + GE A L F + Y + RDIP+ Sbjct: 169 DNDSDGLTSLDLLPSINWD---ATIEKEWSPGEDGAADNLADFIENSARKYKDGRDIPSA 225 Query: 240 QGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYP 299 GTS+LSP+L G +SP Q W +K++F + K ++L+EL WREF +L+ +P Sbjct: 226 NGTSRLSPHLHFGEVSPNQVWYAIKDKFGNSEDK---SIETYLSELGWREFSYYLLFHFP 282 Query: 300 SVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITAS 359 ++ K F +K W D+ L+AW++G TG PI+DA MR+L G+MHNR+RMI S Sbjct: 283 TLP-NKNFNEKFDKFPWRTDAKALKAWQKGNTGIPIVDAGMRELWQTGYMHNRVRMIVGS 341 Query: 360 FLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFD 419 FLVK+LL+ W GE +F LLD DLASN+ WQW A +G D+ PYFRIFNP +QG++FD Sbjct: 342 FLVKNLLLSWHEGERWFWDTLLDADLASNSASWQWVAGSGADAAPYFRIFNPILQGEKFD 401 Query: 420 PQGTFIRHWLPELNNVPTQYIH----APHSWLDKNDLSLN--YPLPIVDHKKACHHTLNQ 473 +G ++R + PEL + +YIH AP + L + L YP PIVD K + L+ Sbjct: 402 KKGNYVRKYCPELKKLSDKYIHKPWEAPSAILKDAGIELGKEYPKPIVDLKASRQRALDA 461 Query: 474 YYAAKK 479 + K+ Sbjct: 462 FQTLKE 467 >gi|291277653|ref|YP_003495244.1| deoxyribodipyrimidine photo-lyase [Candidatus Rickettsia amblyommii] gi|289657737|gb|ADD14598.1| deoxyribodipyrimidine photo-lyase [Candidatus Rickettsia amblyommii AaR/Sc] Length = 478 Score = 266 bits (679), Expect = 7e-69, Method: Compositional matrix adjust. Identities = 164/470 (34%), Positives = 245/470 (52%), Gaps = 32/470 (6%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFI-ATPEQWRQHGISARQSHFIYASLLQVQ 69 ++WLR +LR+ DN++ AA NSD K++ +FI T R R+ F+ +L + Sbjct: 6 IIWLRRNLRLHDNRSFAAALRNSD-KILPIFIFDTTILERFKNPHDRRLSFLANTLCLIN 64 Query: 70 KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH 129 L + + IE + ++ ++ + YE + + RDK +++ L Sbjct: 65 DELKKLKGKLLVFH----GNPIEIISKLTAILKIENIYADEDYEPSNIARDKTVQELLGS 120 Query: 130 RVICKSFDDSVLLPPGSILNHALQMYKVYTP----FRKALIQNLVQADLRSLPVPAIRLT 185 + D +L+ P +L + YKVYTP FRK + N V A + L + L Sbjct: 121 NCTLNLYCDHLLIKPARVLTKDNKPYKVYTPYMQAFRKFIANNGVIAHNKLLMNYSYNLE 180 Query: 186 GPV-TPSNIP-RFFDYPFQAIDPMFPIG----------EQNALHILRKFCKEKVYYYVEQ 233 G + P +I + D A + + IG +NA +IL KF ++ +Y Sbjct: 181 GKLYIPQDIDLKTIDLNVGASEALKQIGYVYKEDELWQPRNAQNILNKFIANRINFYKTD 240 Query: 234 RDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRH 293 RD GTS +SPYL G++S R+C+ + + + P G +W+NELIWREFY Sbjct: 241 RDFLYRNGTSTISPYLRFGLISIRECYRKA----FNASLNP--GTVTWINELIWREFYAT 294 Query: 294 LMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRL 353 ++ +P+ + + KI WN + TG+PIIDAA++QL + GWMHNR Sbjct: 295 ILYHFPNTVNEEFLEKYRNKIPWNNKKEYFNKFINAETGYPIIDAAVKQLISDGWMHNRS 354 Query: 354 RMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTI 413 RMI ASF K+LL+DWR GEE+F L+D +LASN GGWQWA+S G D+ PYFRIFNP Sbjct: 355 RMIVASFFTKNLLLDWRKGEEFFAQYLMDYELASNVGGWQWASSCGTDAQPYFRIFNPYT 414 Query: 414 QGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDH 463 QG+ FDP +I+ +LP L T IH + + + NYP P+VD+ Sbjct: 415 QGQHFDPDAEYIKKYLPTLKKAQTHIIHNINFY----KMYDNYPKPMVDY 460 >gi|282889865|ref|ZP_06298404.1| hypothetical protein pah_c004o286 [Parachlamydia acanthamoebae str. Hall's coccus] gi|281500439|gb|EFB42719.1| hypothetical protein pah_c004o286 [Parachlamydia acanthamoebae str. Hall's coccus] Length = 474 Score = 266 bits (679), Expect = 7e-69, Method: Compositional matrix adjust. Identities = 162/484 (33%), Positives = 253/484 (52%), Gaps = 30/484 (6%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 V +VW+R DLRI D+ AL AA VI ++I +P++ + +++ SL + Sbjct: 4 VTIVWMRQDLRIEDHPALDAAAQR--GSVIPLYIWSPQEEGHWPLGGASKWWLHHSLKSL 61 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL- 127 + L G+ + + D L + +F++R+YE ++RD ++ +L Sbjct: 62 ENDLRSLGLPLIIRKGKSLDC----LRDVIKETNADAVFWSRRYEPYAIKRDIQVKSKLS 117 Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187 + ++ KSF +VL P SI N + ++V+T F K + + L L P I + G Sbjct: 118 EEGLLAKSFPGNVLYEPWSIQNKQGKPFQVFTFFWKNCLAK--EQPLAPLSAP-IGVKGK 174 Query: 188 VTPSNIPRFFDYPF-------QAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ 240 + + D + I + G A L F + + Y E+RD P + Sbjct: 175 IVEVDSLHIEDLKLLPTTSWDEGIAHTWKPGSVYAKEFLSYFLEGGAHDYNERRDRPDLP 234 Query: 241 GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPS 300 G S+LSPYL G +S R W+ + ++ +P +L +L WR+F HL+ +P Sbjct: 235 GVSRLSPYLHFGEISVRMVWDEIVKKLGFQEAEP------YLRQLGWRDFAYHLLYHFPK 288 Query: 301 VCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASF 360 +P W ++ LL+ W++G TG+P +DA MRQL GWMHNR RM+ SF Sbjct: 289 TPE-EPLRQEFAYFPWKENKKLLKVWQKGMTGYPFVDAGMRQLWMTGWMHNRARMVVGSF 347 Query: 361 LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDP 420 LVKDLL+ W+ G ++F L+D DLA+N GWQW A +G D+ PYFRIFNP QG++FDP Sbjct: 348 LVKDLLLPWQTGAQWFWDTLVDADLANNTLGWQWVAGSGADAAPYFRIFNPITQGEKFDP 407 Query: 421 QGTFIRHWLPELNNVPTQYIH----APHSWLDKNDLSLN--YPLPIVDHKKACHHTLNQY 474 +G+++R W+PE+ N+P ++IH AP L+K + L YP PIV+H +A L + Sbjct: 408 EGSYVRKWVPEIANLPDKWIHKPWEAPLDVLEKAGVKLGQTYPYPIVNHDEARLAALEAF 467 Query: 475 YAAK 478 K Sbjct: 468 EEIK 471 >gi|17230217|ref|NP_486765.1| deoxyribopyrimidine photolyase [Nostoc sp. PCC 7120] gi|17131818|dbj|BAB74424.1| deoxyribopyrimidine photolyase [Nostoc sp. PCC 7120] Length = 479 Score = 266 bits (679), Expect = 8e-69, Method: Compositional matrix adjust. Identities = 171/486 (35%), Positives = 248/486 (51%), Gaps = 26/486 (5%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 L W R DLRI DN L AA S +KV+ VF P + ++ + ++ SL ++Q+ Sbjct: 6 LFWHRRDLRIADNIGLAAARQQS-SKVVGVFCLDPNILERDDVAPARVTYMIGSLQELQQ 64 Query: 71 SLSQKGI-VFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH 129 Q G + H D ++ + +F+N E RD+ + L+ Sbjct: 65 RYVQAGSQLLILH-----GDPVQAIPHLAEALNAKAVFWNWDVEPYSQTRDRAILDILKD 119 Query: 130 RVI--CKSFDDSVLLPPGSILNHALQMYKVYTPF--------RKALIQNLVQADLRSLPV 179 + I D +L P I + + Y VYTPF + ++ L A+ L Sbjct: 120 KGIQFLTHKWDQILHSPDEIRSGSNTPYTVYTPFWKNWSSKPKAKPVETLQNAE--GLTE 177 Query: 180 PAIRLTGPVTPSNIPRFFDYPF-QAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPA 238 L +P D F D + GE A L +F + + Y EQR+ PA Sbjct: 178 SEQELAQKAGVKTLPTAKDLGFFWDADLIIAPGEAAAQAKLEEFTAKAITEYQEQRNFPA 237 Query: 239 IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAF-SWLNELIWREFYRHLMAF 297 + GTSQLS L GV+ R W E + + S A +W EL WREFY+H M Sbjct: 238 VDGTSQLSAALKFGVIGIRTVWQATLEALENSRSEEASAAIRTWQQELAWREFYQHAMYN 297 Query: 298 YPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMIT 357 +P + G + + W + QAW++G TG+PI+DAAMRQ+N GWMHNR RMI Sbjct: 298 FPELADGA-YRETFKNFPWETNEEHFQAWREGKTGYPIVDAAMRQMNESGWMHNRCRMIV 356 Query: 358 ASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKR 417 ASFL KDLL++ ++GE+YFM +L+DGDL++NNGGWQW+AS+G D P RIFNP Q ++ Sbjct: 357 ASFLTKDLLINPQLGEKYFMQKLIDGDLSANNGGWQWSASSGMDPKP-LRIFNPASQSQK 415 Query: 418 FDPQGTFIRHWLPELNNVPTQY-IHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYA 476 FDP +IR W+PEL ++ T+Y + + L+++ ++ Y PIVDH+K +Y Sbjct: 416 FDPDAEYIRRWVPELRSMDTEYLVTGKITPLERH--AVGYVKPIVDHQKQQQLFKQRYQQ 473 Query: 477 AKKQSL 482 K SL Sbjct: 474 QKATSL 479 >gi|257053940|ref|YP_003131773.1| Deoxyribodipyrimidine photo-lyase [Halorhabdus utahensis DSM 12940] gi|256692703|gb|ACV13040.1| Deoxyribodipyrimidine photo-lyase [Halorhabdus utahensis DSM 12940] Length = 470 Score = 265 bits (678), Expect = 9e-69, Method: Compositional matrix adjust. Identities = 166/479 (34%), Positives = 243/479 (50%), Gaps = 19/479 (3%) Query: 7 MSVHLVWLRNDLRITDNKALYA-ACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASL 65 M +H W R DLR+ DN+AL +D +V+ VF+ P +H AR + A + Sbjct: 1 MRIH--WHRRDLRLADNRALAGDGIETNDEQVLGVFVFDPAVL-EHAGPARVVALLDA-V 56 Query: 66 LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125 ++++ ++G D + L + + +NR+Y RD + Sbjct: 57 AALREAYRERGSDLVLASG----DPVAELPTLATTYGAELVTWNREYSPLARDRDAAVRA 112 Query: 126 RLQHRVICK-SFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL 184 L I + + D+VL PG+I + Y+V+T F + A + P A L Sbjct: 113 SLDDAGIGRDAVHDAVLHEPGTIRTNDGDPYQVFTYFWRKWRDRRKSAPI--APPDADSL 170 Query: 185 TGPVTPSNIPRFFDYPFQAIDPMFP-IGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS 243 + +P + D + P + A L FC +Y Y ++RD PA TS Sbjct: 171 GDVTDDTPVPTWADLDVEEPTASIPGVTPAAARERLDSFCAGDIYRYEDRRDYPAEDCTS 230 Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFV-DLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVC 302 +LS +L G + R + + ++ + ++L WREFY ++ F PSV Sbjct: 231 RLSHHLKYGTIGIRAVYAATERACERGETADDRASVREFQSQLAWREFYTQVLWFNPSVV 290 Query: 303 MGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLV 362 + F + IEW D LQAWK G TG+PI+DA MRQL T +MHNR+RMI ASFL Sbjct: 291 T-ENFKSYENPIEWRTDPEGLQAWKDGETGYPIVDAGMRQLETAAYMHNRVRMIVASFLT 349 Query: 363 KDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQG 422 KDLL+DWR G ++F ++L+D D A++NGGWQWAASTG D+ PYFRIFNP QG+R+DP Sbjct: 350 KDLLIDWREGYDWFRAKLVDHDTANDNGGWQWAASTGTDAQPYFRIFNPMTQGERYDPDA 409 Query: 423 TFIRHWLPELNNVPTQYIHAPHSWLDKNDLSL---NYPLPIVDHKKACHHTLNQYYAAK 478 +IR ++PEL+ VP IH+ H LD + +YP PIVDH L + A+ Sbjct: 410 AYIREYVPELDGVPADVIHSWHE-LDPGAREMHAPDYPAPIVDHADRREQALAMFERAR 467 >gi|91204921|ref|YP_537276.1| deoxyribodipyrimidine photo-lyase [Rickettsia bellii RML369-C] gi|91068465|gb|ABE04187.1| Deoxyribodipyrimidine photo-lyase [Rickettsia bellii RML369-C] Length = 475 Score = 265 bits (678), Expect = 1e-68, Method: Compositional matrix adjust. Identities = 164/470 (34%), Positives = 243/470 (51%), Gaps = 32/470 (6%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFI-ATPEQWRQHGISARQSHFIYASLLQVQ 69 +VWLR +LR+ DNK+ AA NSD K++ +FI T R R+ F+ +L + Sbjct: 6 IVWLRRNLRLHDNKSFAAALRNSD-KILPIFIFDTTILERFKNPHDRRLSFLANTLCLIN 64 Query: 70 KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH 129 L + + ++ + ++ ++ + YE N + RDK +++ L Sbjct: 65 DELKKLKGKLLVF----YGKPLDIIPKLAATLKIENIYADEDYEPNNIERDKKVQELLGS 120 Query: 130 RVICKSFDDSVLLPPGSILNHALQMYKVYTP----FRKALIQNLVQADLRSLPVPAIRLT 185 + D +L+ P +L + YKVYTP FRK + N + + L + L Sbjct: 121 NCTLNLYCDHLLIKPDRVLTKDNKAYKVYTPYMQAFRKFIADNGSISHNKLLTNYSYNLD 180 Query: 186 GPV-TPSNIP-RFFDYPFQAIDPMFPIG----------EQNALHILRKFCKEKVYYYVEQ 233 G + TP +I + D + + IG +NA ++L KF ++ Y Sbjct: 181 GKLYTPQDIELKTIDLNIGKSEALKQIGYVYKEDELWQPKNAQNVLDKFITRRINRYKID 240 Query: 234 RDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRH 293 +D + GTS +SPYL G++S R+C+ + G+ +W+NELIWREFY Sbjct: 241 QDFLYLDGTSTISPYLRFGLVSIRECYRKA------FNAASNPGSITWINELIWREFYAT 294 Query: 294 LMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRL 353 ++ +P+ + + KI WN + TG+PIIDAA++QL GWMHNR Sbjct: 295 ILYHFPNTVNEEFLEKYKNKIPWNNKKEYFDKFINAETGYPIIDAAVKQLVGDGWMHNRA 354 Query: 354 RMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTI 413 RMI ASF K+LL+DWR GEE+F L+D +LASN GGWQWA+S G D+ PYFRIFNP Sbjct: 355 RMIVASFFSKNLLLDWRKGEEFFAQYLMDYELASNVGGWQWASSCGTDAQPYFRIFNPYT 414 Query: 414 QGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDH 463 QGK FDP +I+ +LP L NV IH +S + + NYP PIVD+ Sbjct: 415 QGKNFDPDAEYIKKYLPILKNVQPHIIHNINS----HKMYDNYPKPIVDY 460 >gi|206974530|ref|ZP_03235446.1| deoxyribodipyrimidine photolyase family protein [Bacillus cereus H3081.97] gi|206747173|gb|EDZ58564.1| deoxyribodipyrimidine photolyase family protein [Bacillus cereus H3081.97] Length = 476 Score = 265 bits (678), Expect = 1e-68, Method: Compositional matrix adjust. Identities = 160/485 (32%), Positives = 261/485 (53%), Gaps = 32/485 (6%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 +V + D R+ DN AL+ A + + + V+ T I + +++ +++ V++ Sbjct: 6 IVMFQKDFRLYDNPALFEAAQSGEVLPLYVYDET------FSIGSASKWWLHHTIIDVKR 59 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130 L G + + ++ + ++ Q +T +++N Y+ + ++ ++ ++ L+ + Sbjct: 60 QLEALGSTLIIRKGNTMEEILSLIE----QLGITAVYWNICYDPDRLQSNQKMKMMLEDK 115 Query: 131 -VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIR----LT 185 + CK F+ +LL P I YKV+TPF A + ++ + V +I+ L Sbjct: 116 GITCKEFNSHLLLEPWIIKKKDNTEYKVFTPFYNAFQKQVISKPISK--VQSIKWGSSLP 173 Query: 186 GPVTPSNIPRFFDYPFQA-IDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244 ++ S + P+ + ++ ++ E+ A +KF K+ Y E RD P S Sbjct: 174 ASLSVSELHLLPTIPWTSHMESIWEPTEEGAYKTCKKFFSSKLVSYSEGRDFPNQNAHSM 233 Query: 245 LSPYLSIGVLSPRQCW----NRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPS 300 L+PYLS G +S + + N+ E+ L K + S++ +LIWREF +L+ YP Sbjct: 234 LAPYLSFGQISVKLMYHYLINKSNEKQCSLFEKQVN---SFIRQLIWREFSYYLLYHYP- 289 Query: 301 VCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASF 360 + KP E W+K+ LL+ W++G TG+P IDA MR+L G+MHNR RM ASF Sbjct: 290 FTVYKPLNKSFENFPWDKEEELLRVWQKGKTGYPFIDAGMRELWQTGFMHNRARMAVASF 349 Query: 361 LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDP 420 LVK LL+ W+ G ++FM LLD D+A+N GWQW A +G D+ PYFRIFNP QG++FD Sbjct: 350 LVKHLLIPWQEGAKWFMDTLLDADIANNTMGWQWVAGSGADASPYFRIFNPITQGEKFDK 409 Query: 421 QGTFIRHWLPELNNVPTQYIH----APHSWLDKNDLSLN--YPLPIVDHKKACHHTLNQY 474 G +IR W+PEL ++P +YIH AP L K ++ L YPLP+VDHK A L Y Sbjct: 410 NGEYIRRWVPELRDIPNKYIHKPWEAPEHILQKANIKLGDTYPLPVVDHKAARERALCAY 469 Query: 475 YAAKK 479 + K+ Sbjct: 470 KSMKE 474 >gi|229030832|ref|ZP_04186854.1| Deoxyribodipyrimidine photolyase [Bacillus cereus AH1271] gi|228730481|gb|EEL81439.1| Deoxyribodipyrimidine photolyase [Bacillus cereus AH1271] Length = 476 Score = 265 bits (677), Expect = 1e-68, Method: Compositional matrix adjust. Identities = 165/483 (34%), Positives = 256/483 (53%), Gaps = 28/483 (5%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 +V + D R+ DN AL+ A + + V+ V++ Q I + +++ +++ VQK Sbjct: 6 IVMFQKDFRLYDNPALFEAVQSGE--VLPVYV----QDETFSIGSAAKWWLHHAIIDVQK 59 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130 L G + + ++ + ++ Q +T +++N Y+ ++ ++ ++ L+ + Sbjct: 60 QLEALGSTLIIRKGNTQEEILSLIE----QLGITAVYWNICYDPERLQSNQKMKMMLEDK 115 Query: 131 -VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLP--VPAIRLTGP 187 +ICK F+ +LL P I YKV+TPF A + ++ + + L Sbjct: 116 GIICKEFNSHLLLEPWIIKKKDNTEYKVFTPFYNAFQKQVIPKPISKVQRIKGGNSLPAS 175 Query: 188 VTPSNIPRFFDYPFQA-IDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246 ++ S + P+ + I+ M+ E+ A +KF K+ Y E RD P S L+ Sbjct: 176 LSVSKLHLLPTIPWTSHIESMWEPTEEGAYKTCKKFFSSKLASYSEGRDFPNENAHSMLA 235 Query: 247 PYLSIGVLSPRQCW----NRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVC 302 PYLS G +S R + N+ E L K + S++ + IWREF +L+ YP Sbjct: 236 PYLSFGQISVRWMYHYLINKSTERQCSLFEKQVN---SFIRQFIWREFSYYLLYHYP-FT 291 Query: 303 MGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLV 362 + KP E WN + LL W++G TG+P IDA MR+L G+MHNR RM ASFLV Sbjct: 292 VYKPLNKSFEHFPWNNEEELLTVWQKGDTGYPFIDAGMRELWQTGFMHNRARMAVASFLV 351 Query: 363 KDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQG 422 K LL+ W+ G ++FM LLD D+A+N GWQW A +G D+ PYFRIFNP QG++FD G Sbjct: 352 KHLLIPWQEGAKWFMDTLLDADIANNTMGWQWVAGSGADASPYFRIFNPITQGEKFDKDG 411 Query: 423 TFIRHWLPELNNVPTQYIH----APHSWLDKNDLSLN--YPLPIVDHKKACHHTLNQYYA 476 +IR W+PEL ++P +YIH AP L + ++ L YPLPIVDHK A L Y + Sbjct: 412 EYIRKWVPELRDMPNKYIHKPWEAPEHILQEANIQLGHTYPLPIVDHKAARERALCAYKS 471 Query: 477 AKK 479 KK Sbjct: 472 MKK 474 >gi|146412189|ref|XP_001482066.1| hypothetical protein PGUG_05829 [Meyerozyma guilliermondii ATCC 6260] Length = 607 Score = 265 bits (677), Expect = 1e-68, Method: Compositional matrix adjust. Identities = 159/486 (32%), Positives = 255/486 (52%), Gaps = 25/486 (5%) Query: 17 DLRITDNKALYAACH---NSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQKSLS 73 D R +DN L AA + ++ +++ + HG+S Q + SL +++ L+ Sbjct: 122 DFRQSDNTGLNAASRMAAKENLPLVCLYVLCRDDLFAHGVSGFQLEYRLRSLELLREELA 181 Query: 74 QKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRR-DKLLEKRLQHRVI 132 QK I + + + + Q +++ LF N +YE++E+RR L ++ L+ + Sbjct: 182 QKNIPLVFLNVDERKEVVPIVKEKAQQLKISHLFANIEYEVDELRRYTNLCKELLKADIS 241 Query: 133 CKSFDDSVLLPPGSILNHAL-QMYKVYTPFRKALIQNL--------VQA-------DLRS 176 + +D+ L PG+I+ + + V+TP+ +A +L V+A + R Sbjct: 242 FQPHNDTTLAVPGTIVTKSKGTQFSVFTPWYRAWCAHLNKMKDPFQVRAKPEANSDEFRQ 301 Query: 177 LPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKE-KVYYYVEQRD 235 L P P + + +A + GE A L+ F ++ Y R+ Sbjct: 302 RNSHLFDLKIPQAPPG-KQLTEKQKEAFEKYHKPGENAAWDDLQDFITSGRIKRYNVDRN 360 Query: 236 IPAIQGTSQLSPYLSIGVLSPRQCWNRL-KEEFVDLLIKPKSGAFSWLNELIWREFYRHL 294 P++ G S++S + + G ++ R L + + + GA W ++ WR+FYRH+ Sbjct: 361 DPSVNGVSRMSVHFASGTINARTVIRSLLDHKLLRTIDSGNDGAREWARQVAWRDFYRHV 420 Query: 295 MAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLR 354 + +P +CM KPFI ++++W +S + W QG TG+PI+DAAMRQL +G++HNR+R Sbjct: 421 LCNWPHICMFKPFISNMDEVKWEYNSDHFERWCQGKTGYPIVDAAMRQLLEMGYLHNRVR 480 Query: 355 MITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQ 414 M+ ASFL K L++DWR GE YF+ L DGD SNNGGW +++S G D PYFRIFNP Q Sbjct: 481 MVVASFLSKHLMIDWREGERYFLENLADGDFPSNNGGWGFSSSVGVDPQPYFRIFNPWTQ 540 Query: 415 GKRFDPQGTFIRHWLPELNNV-PTQYIHAPHSWLDKNDLSLN-YPLPIVDHKKACHHTLN 472 ++FD +G +IR WLPEL + + IH P+ + N YP PIVDHK A L Sbjct: 541 AEKFDKKGDYIRKWLPELREIQDVKGIHNPYENGYRQIAEKNGYPPPIVDHKTARERALE 600 Query: 473 QYYAAK 478 +Y AK Sbjct: 601 RYKEAK 606 >gi|302877366|ref|YP_003845930.1| Deoxyribodipyrimidine photo-lyase [Gallionella capsiferriformans ES-2] gi|302580155|gb|ADL54166.1| Deoxyribodipyrimidine photo-lyase [Gallionella capsiferriformans ES-2] Length = 473 Score = 265 bits (677), Expect = 1e-68, Method: Compositional matrix adjust. Identities = 174/479 (36%), Positives = 238/479 (49%), Gaps = 27/479 (5%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 + W R DLR+ D+ ALY A NS A T R+ FI+ SL ++ Sbjct: 8 ICWFRRDLRLDDHAALYHALKNSRAVHCVFVFDTVILDALSDKHDRRVEFIWHSLYELNA 67 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130 L Q G Q + +E + + V +F NR YE VRRD + L Sbjct: 68 LLQQHGSTLQILH----GNPVELIPHLARELEVQAVFCNRDYEPLAVRRDAAVAASLSD- 122 Query: 131 VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPV----PAIRLTG 186 + + D V+ IL Y V+TP++ A ++ L LR+ PV ++ + Sbjct: 123 IDFHQYKDQVIFEQSEILTGGGTPYSVFTPYKNAWLKKLDDFYLRAYPVERYFSSLAKSA 182 Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246 P + P + P G A + F ++ Y E R+ PA++G S LS Sbjct: 183 PQAFPALALLGFLPGKLNVQALPTGASGAATLFENFVS-RIDAYGEARNFPAVKGVSYLS 241 Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP 306 +L G +S R+ F +G WL+ELIWR+FY+ + +P + G Sbjct: 242 VHLRFGTISIRRV-----ASFA--YYSGGAGGQVWLSELIWRDFYQMQLHHHPQLGQGAA 294 Query: 307 FIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLL 366 F I + + AW + TG+P+IDAAMRQLN G+MHNRLRM+ ASFLVKDL Sbjct: 295 FKAQFNDIRFPNEEGKFAAWCEARTGYPLIDAAMRQLNGSGYMHNRLRMVVASFLVKDLH 354 Query: 367 VDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIR 426 +DWR GE YF L+D DLA+NNGGWQWAASTG D+ P+FRIFNP Q ++FD G FIR Sbjct: 355 IDWRWGERYFAQHLIDFDLAANNGGWQWAASTGCDAQPWFRIFNPVTQSEKFDGAGRFIR 414 Query: 427 HWLPELNNVPTQYIHAPHSWLDKND--------LSLNYPLPIVDHKKACHHTLNQYYAA 477 ++PEL P ++IHAP WL + YPLP+VDH A TL + AA Sbjct: 415 RYVPELAGCPDKWIHAP--WLMPAAEQQRCGVLVGKTYPLPVVDHAVARITTLALFKAA 471 >gi|298490155|ref|YP_003720332.1| deoxyribodipyrimidine photo-lyase ['Nostoc azollae' 0708] gi|298232073|gb|ADI63209.1| Deoxyribodipyrimidine photo-lyase ['Nostoc azollae' 0708] Length = 479 Score = 265 bits (677), Expect = 1e-68, Method: Compositional matrix adjust. Identities = 178/497 (35%), Positives = 260/497 (52%), Gaps = 49/497 (9%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 L W R DLRI+DN L AA S +K++ VF P ++ + ++ L ++K Sbjct: 6 LFWHRRDLRISDNTGLIAAREQS-SKIVGVFCLDPCILNSDDVAPARIKYMMGCLQSLEK 64 Query: 71 SLSQKG--IVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDK-----LL 123 +Q G +V Y D+ I + + +V +F+N E RD L Sbjct: 65 QYTQAGSQLVILY------DNPIAVIPALAEALKVKAVFWNWDVEPYAQIRDNDVICVLR 118 Query: 124 EKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIR 183 EK +Q + +++D +L P IL+ + Y VYTPF K + ++ PV ++ Sbjct: 119 EKGIQ--TLNQNWD-QLLHSPDEILSGSKTPYTVYTPFWKNW-----SSKPKANPVATLK 170 Query: 184 LTGPVTPS-----------NIPRFFDYPF-----QAIDPMFPIGEQNALHILRKFCKEKV 227 + +T + N+P D F I+P GE A L F + Sbjct: 171 NSEGLTAAEQEIAKQSGAINLPSAQDLGFIWDGELIIEP----GEAVAKARLETFTTSAI 226 Query: 228 YYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAF-SWLNELI 286 Y EQR+ P + GTSQLS L GV+ R W KE + + + +W E Sbjct: 227 NEYQEQRNFPTVHGTSQLSAALKFGVIGIRTIWQATKELLETSNSEEVTASIRTWQQEFA 286 Query: 287 WREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTI 346 WREFY+H M +P++ G + +K W + QAW +G TG+PI+DAAMRQLN I Sbjct: 287 WREFYQHAMYHFPALANG-AYRDIFKKFPWQNNQAHFQAWCEGKTGYPIVDAAMRQLNEI 345 Query: 347 GWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYF 406 GWMHNR RMI ASFL KDL+++ + GE+YFM +L+DGDL++NNGGWQW+AS+G DS P Sbjct: 346 GWMHNRCRMIVASFLTKDLIINPQWGEKYFMQKLIDGDLSANNGGWQWSASSGMDSKP-L 404 Query: 407 RIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPH-SWLDKNDLSLNYPLPIVDHKK 465 RIFNP Q ++FD G +IR W+ EL +V T+Y+ + + + L++ ++ YP PIVDHKK Sbjct: 405 RIFNPASQAQKFDIDGEYIRQWVRELKSVDTEYLVSGNITPLERR--AVGYPTPIVDHKK 462 Query: 466 ACHHTLNQYYAAKKQSL 482 Q Y +K + Sbjct: 463 Q-QGLFKQLYQEQKTGM 478 >gi|110668379|ref|YP_658190.1| deoxyribodipyrimidine photolyase [Haloquadratum walsbyi DSM 16790] gi|109626126|emb|CAJ52578.1| deoxyribodipyrimidine photolyase [Haloquadratum walsbyi DSM 16790] Length = 478 Score = 265 bits (677), Expect = 1e-68, Method: Compositional matrix adjust. Identities = 169/490 (34%), Positives = 244/490 (49%), Gaps = 29/490 (5%) Query: 9 VHLVWLRNDLRITDNKALYAACH--------NSDAKVIAVFIATPEQWRQHGISARQSHF 60 + L W R+DLR DN+ L A ++D +I VFI G + Q + Sbjct: 1 MQLYWHRSDLRGVDNRGLAEAASAVSPDLLPDADG-IIPVFIFDDNALEHDGNARVQ--Y 57 Query: 61 IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120 + S+ +++ + + D + L V ++ +NR+Y RD Sbjct: 58 MLESIAELRSWYRDRDSDLLIARG----DPVSILPELASTHDVDRVVWNREYSGFAQSRD 113 Query: 121 KLLEKRL-QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPF----RKALIQNLVQADLR 175 + + L +H + S DS+ PGSI + + Y VYT F R + A Sbjct: 114 QQVADALTEHDIAHCSVRDSIFFEPGSITTNKGEPYSVYTYFWKKWRDREKNAPIDAPDA 173 Query: 176 SLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRD 235 + VP + G P+ F+ P I P G A + L FC + +Y Y + RD Sbjct: 174 DMFVPDEGI-GDSLPTIDSLGFEEPTADIQPA---GTNAARNRLSDFCADGIYRYDDDRD 229 Query: 236 IPAIQGTSQLSPYLSIGVLSPRQC-WNRLKEEFVDLLIKPKSGAFS-WLNELIWREFYRH 293 P+ S+LS LS G + R + VD + ++ + + ++L WREFY H Sbjct: 230 YPSRDAVSRLSADLSFGTIGVRDVHAATVAAAEVDGITDAEAESVEEFQSQLAWREFYTH 289 Query: 294 LMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRL 353 ++ F P V + + + I+W D LQAWK G TG+PI+DA MRQL + +MHNRL Sbjct: 290 VLYFNPEVVT-ENYKSYENGIQWRDDPAALQAWKDGETGYPIVDAGMRQLKSEAYMHNRL 348 Query: 354 RMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTI 413 RMI ASFL KDLL+DWR G +F L D ++A+NNGGWQWAASTG D+ PYFRIFNP Sbjct: 349 RMIVASFLTKDLLIDWREGYGHFRQYLADHNIANNNGGWQWAASTGTDAQPYFRIFNPMT 408 Query: 414 QGKRFDPQGTFIRHWLPELNNVPTQYIHAPH--SWLDKNDLSLNYPLPIVDHKKACHHTL 471 QG+R+DP +I+ ++PEL VP IH H S ++ L +YP PIVDH K L Sbjct: 409 QGERYDPDAEYIKQYVPELREVPADTIHEWHELSPTERARLDTDYPAPIVDHSKQREKAL 468 Query: 472 NQYYAAKKQS 481 + A+ + Sbjct: 469 EMFETARGDA 478 >gi|229151347|ref|ZP_04279551.1| Deoxyribodipyrimidine photolyase [Bacillus cereus m1550] gi|228632137|gb|EEK88762.1| Deoxyribodipyrimidine photolyase [Bacillus cereus m1550] Length = 476 Score = 265 bits (677), Expect = 1e-68, Method: Compositional matrix adjust. Identities = 168/490 (34%), Positives = 254/490 (51%), Gaps = 42/490 (8%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 +V + D R+ DN AL+ A + + V+ V+I Q I + +++ +++ VQK Sbjct: 6 IVMFQKDFRLYDNPALFEAVQSGE--VLPVYI----QDETFSIGSAAKWWLHHAIIDVQK 59 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130 L G + + ++ + S Q +T +++N Y+ + ++ ++ ++ L+ + Sbjct: 60 QLEALGSTLIIRKGNTQEEIL----SLIKQLDITAVYWNSCYDPDRLKSNQKMKMILEDK 115 Query: 131 -VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189 +ICK F+ +LL P I YKV+TPF A + ++ P P R+ Sbjct: 116 GIICKEFNSHLLLEPWIIKKKDNTEYKVFTPFYNAFQKQVI-------PKPISRVQSIKW 168 Query: 190 PSNIPRFFDYPFQAIDPMFP----------IGEQNALHILRKFCKEKVYYYVEQRDIPAI 239 S++P + P P E+ A +KF K+ Y E RD P Sbjct: 169 GSSLPTSLSVSELHLLPTIPWTSHMEAIWDPTEEGAYKTFKKFFSSKLVSYSEGRDFPDQ 228 Query: 240 QGTSQLSPYLSIGVLSPRQCW----NRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLM 295 S L+PYLS +S + + N+ E L K + S++ +LIWREF +L+ Sbjct: 229 NVHSMLAPYLSFSQISVKLMFHYLINKSTERQCSLFEKQVN---SFIRQLIWREFSYYLL 285 Query: 296 AFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRM 355 YP + KP E WNK+ LL+ W++G TG+P IDA MR+L G+MHNR RM Sbjct: 286 YHYP-FTVYKPLNKSFEHFPWNKEEELLRVWQKGETGYPFIDAGMRELWQTGFMHNRARM 344 Query: 356 ITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQG 415 ASFLVK LL+ W+ G ++FM LLD D+A+N GWQW A +G D+ PYFRIFNP QG Sbjct: 345 AVASFLVKHLLIPWQEGAKWFMDTLLDADIANNTMGWQWVAGSGADASPYFRIFNPITQG 404 Query: 416 KRFDPQGTFIRHWLPELNNVPTQYIH----APHSWLDKNDLSLN--YPLPIVDHKKACHH 469 ++FD G +IR W+PEL ++P +YIH AP L K ++ L YP PIVDHK A Sbjct: 405 EKFDKNGEYIRKWVPELRDIPNKYIHKPWEAPEHILQKANIKLGNTYPYPIVDHKAARER 464 Query: 470 TLNQYYAAKK 479 L Y + K+ Sbjct: 465 ALCAYKSMKE 474 >gi|30021247|ref|NP_832878.1| deoxyribodipyrimidine photolyase [Bacillus cereus ATCC 14579] gi|229130975|ref|ZP_04259903.1| Deoxyribodipyrimidine photolyase [Bacillus cereus BDRD-Cer4] gi|29896801|gb|AAP10079.1| Deoxyribodipyrimidine photolyase [Bacillus cereus ATCC 14579] gi|228652473|gb|EEL08383.1| Deoxyribodipyrimidine photolyase [Bacillus cereus BDRD-Cer4] Length = 476 Score = 265 bits (677), Expect = 1e-68, Method: Compositional matrix adjust. Identities = 165/490 (33%), Positives = 257/490 (52%), Gaps = 42/490 (8%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 +V + D R+ DN AL+ A + + V+ V+I Q I + +++ +++ V+K Sbjct: 6 IVMFQKDFRLYDNPALFEAVQSGE--VLPVYI----QDETFSIGSASKWWLHHAVIDVKK 59 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130 L G + ++ + ++ Q +T +++N Y+ + ++ ++ ++ L+ + Sbjct: 60 QLEALGSTLIIRKGRTEEEILSLIE----QLDITAVYWNICYDPDRLQSNQKMKMMLEDK 115 Query: 131 -VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189 +ICK F+ +LL P I YKV+TPF A + ++ P P R+ Sbjct: 116 GIICKEFNSHLLLEPWIIKKKDNTEYKVFTPFYNAFQKQVI-------PKPFSRVQSIKW 168 Query: 190 PSNIPRFFDYPFQAIDPMFPIG----------EQNALHILRKFCKEKVYYYVEQRDIPAI 239 +++P + P+ P E+ A +KF K+ Y E RD P Sbjct: 169 GNSLPASLSVSELQLLPIIPWTSHMEVIWDPTEEGAYKTFKKFFSSKLVSYSEGRDFPGQ 228 Query: 240 QGTSQLSPYLSIGVLSPRQCW----NRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLM 295 S L+PYLS G +S + + N+ E L K + S++ +LIWREF +L+ Sbjct: 229 NVHSMLAPYLSFGQISVKLMFHYLINKSTERQCSLFEKQVN---SFIRQLIWREFSYYLL 285 Query: 296 AFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRM 355 YP + KP E W+K+ LL+ W++G TG+P IDA MR+L G+MHNR RM Sbjct: 286 YHYP-FTVYKPLNKSFENFPWDKEEELLRVWQKGKTGYPFIDAGMRELWQTGFMHNRARM 344 Query: 356 ITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQG 415 ASFLVK LL+ W+ G ++FM LLD D+A+N GWQW A +G D+ PYFRIFNP QG Sbjct: 345 AVASFLVKHLLIPWQEGAKWFMDTLLDADIANNTMGWQWVAGSGADASPYFRIFNPITQG 404 Query: 416 KRFDPQGTFIRHWLPELNNVPTQYIH----APHSWLDKNDLSLN--YPLPIVDHKKACHH 469 ++FD G +IR W+PEL ++P +YIH AP L K+++ L YP PIVDHK A Sbjct: 405 EKFDKNGEYIRRWVPELRDIPNKYIHKPWEAPEHILQKSNIKLGDTYPFPIVDHKAARER 464 Query: 470 TLNQYYAAKK 479 L Y + K+ Sbjct: 465 ALCAYKSMKE 474 >gi|325110039|ref|YP_004271107.1| deoxyribodipyrimidine photo-lyase type I [Planctomyces brasiliensis DSM 5305] gi|324970307|gb|ADY61085.1| deoxyribodipyrimidine photo-lyase type I [Planctomyces brasiliensis DSM 5305] Length = 502 Score = 265 bits (676), Expect = 1e-68, Method: Compositional matrix adjust. Identities = 180/498 (36%), Positives = 261/498 (52%), Gaps = 53/498 (10%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFI--ATPEQWRQHGISARQSHFIYASLLQV 68 LVWLR DLR+ DN ALYAA N+ VI V++ + W G + S +++ SL + Sbjct: 28 LVWLRQDLRLRDNPALYAAA-NTGRSVIVVYLLPNRNDDWFPGGAA---SWWLHHSLDAL 83 Query: 69 QKSLSQKGIVFQYHQ----CSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD-KLL 123 +L ++ +HQ + + L C + +F+NR YE + RD K Sbjct: 84 TTNLHKR-----HHQLILRSGSAATEMTRLAEDC---KAAAVFWNRCYEPADRERDEKTA 135 Query: 124 EKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIR 183 +K Q +SF S+L+ P ++ Y+V+TPF KA + A LP P Sbjct: 136 DKLAQAGYQVRSFPGSLLIEPWTLSTKQGDPYQVFTPFWKAARSRVEFAS--PLPAPE-S 192 Query: 184 LTGPVTPSNIPRFFDY---PFQAIDPMFP----IGEQNALHILRKFCKEKVYYYVEQRDI 236 L P + D+ P FP GE A +KF + + Y +RD+ Sbjct: 193 LKTPDQWPDSEELADWKLLPTLDWADEFPERWKPGEDAAHAAWQKFLDDNIAEYGTERDV 252 Query: 237 PAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFS-------WLNELIWRE 289 P+ GTS+LSP+L G +SPRQ + E V+ + + ++ S +L+E+ WRE Sbjct: 253 PSHHGTSRLSPHLHYGEISPRQ----IYAEAVEKMNRKQTATESFEKNVNVYLSEIGWRE 308 Query: 290 FYRHLMAFYPSVCMGKPFIPWTEKI---EWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTI 346 F H++ +P P P EK W L+AW+QG TG+PI+DA MR+L Sbjct: 309 FGYHVLYHFPHT----PENPLREKFADFNWETKKSWLKAWQQGQTGYPIVDAGMRELWRT 364 Query: 347 GWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYF 406 GWMHNR+RMI ASFL KDL + W G ++F L+D DLA+N GWQWA+ G D+ PYF Sbjct: 365 GWMHNRVRMIVASFLTKDLRIHWLEGSKWFWDTLVDADLANNTLGWQWASGCGADAAPYF 424 Query: 407 RIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIH----APHSWLDKNDLSL--NYPLPI 460 R+FNPT Q ++FDP+G ++R W PEL ++P +Y+H AP S L+K + L +YP PI Sbjct: 425 RVFNPTRQSEKFDPKGNYLRRWCPELADLPDKYLHCPADAPESVLNKAGVRLGKDYPEPI 484 Query: 461 VDHKKACHHTLNQYYAAK 478 VDH + L ++ K Sbjct: 485 VDHAEQRDAALAEWEKVK 502 >gi|83594235|ref|YP_427987.1| deoxyribodipyrimidine photo-lyase type I [Rhodospirillum rubrum ATCC 11170] gi|83577149|gb|ABC23700.1| Deoxyribodipyrimidine photo-lyase type I [Rhodospirillum rubrum ATCC 11170] Length = 478 Score = 265 bits (676), Expect = 1e-68, Method: Compositional matrix adjust. Identities = 171/480 (35%), Positives = 244/480 (50%), Gaps = 44/480 (9%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFI---ATPEQWRQHGISARQSHFIYASLLQ 67 LVW R+DLR+ DN AL AA +S A VI ++ +T + R G + R ++ SL Sbjct: 6 LVWFRDDLRLADNPALCAAL-DSGAPVIPFYLLDDSTSDGHRPLGGATRW--WLGRSLTS 62 Query: 68 VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127 + +S++Q+G + +++ + + LF NR Y ++ +R D L Sbjct: 63 LAESIAQRGGRLVLRRG----EALSAVPELAAETDAAALFANRLYGMDSLRDDDLFMVLR 118 Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187 + + FD +L P ++ + ++V+TPF K L L LP+ A P Sbjct: 119 VAGLTVRLFDSGLLHRPEAVTTKTGRPFRVFTPFWKTLSATLDPG----LPLAAPDSFPP 174 Query: 188 V--TPSNIPRFFDYPFQAIDP--------MFPIGEQNALHILRKFCKEKVYYYVEQRDIP 237 V P D+ + P + GE A L F V Y RD P Sbjct: 175 VDDPPPASDSLADWSLEPTTPDWAGGLRDTWQPGEAGAQARLEAFFNGPVADYASGRDRP 234 Query: 238 AIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAF 297 TS+LSP+L G +SPRQ W + P G ++L EL WREF HL+ Sbjct: 235 DKPLTSKLSPHLRFGEISPRQVWTAARHH------PPGGGMDAFLRELGWREFCHHLLFQ 288 Query: 298 YPSVC---MGKPFI--PWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNR 352 P++ + F+ PWTE E L AW+ G TG+PI+DA MR+L GWMHNR Sbjct: 289 APTMAEEPLKAEFLAFPWTEAKEIGP---ALAAWQSGETGYPIVDAGMRELWHTGWMHNR 345 Query: 353 LRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPT 412 +RMI ASFL+KDLL+ W+ GE +F L+D A+N GWQW A G D+ P+FRIFNP Sbjct: 346 VRMIAASFLIKDLLIPWQHGERWFWDTLVDACPANNAAGWQWVAGCGADAAPFFRIFNPV 405 Query: 413 IQGKRFDPQGTFIRHWLPELNNVPTQYIH----APHSWLDKNDLSLN--YPLPIVDHKKA 466 QG+RFDP+G ++R WLPEL ++P+ IH AP L + ++L YP P++DH A Sbjct: 406 TQGERFDPEGAYVRRWLPELADLPSSLIHRPWEAPPLILRQAGVTLGKTYPPPLIDHAHA 465 >gi|157692159|ref|YP_001486621.1| deoxyribodipyrimidine photo-lyase [Bacillus pumilus SAFR-032] gi|157680917|gb|ABV62061.1| deoxyribodipyrimidine photo-lyase [Bacillus pumilus SAFR-032] Length = 466 Score = 265 bits (676), Expect = 1e-68, Method: Compositional matrix adjust. Identities = 148/389 (38%), Positives = 218/389 (56%), Gaps = 16/389 (4%) Query: 103 VTKLFYNRQYEINEVRRDKLLEKRLQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPF 161 + +F+N RRDK + L+ + I ++ D+ L IL Y+V+TP+ Sbjct: 83 INAVFFNEDEVGIGQRRDKQVTDFLEKKGIHVSTWQDTHLHGAQDILKADGSHYQVFTPY 142 Query: 162 ----RKALIQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALH 217 RK Q +++ D + ++ + D IG + A++ Sbjct: 143 YQSWRKQEKQPVIKVDKSFFSSGHMICDESLSQKGNEKLRDLIKGCSRKFDQIGTEKAMN 202 Query: 218 ILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSG 277 L++F ++++ Y E+RDIP++ GTS+LS +L G +S R ++ + EE + G Sbjct: 203 TLQQFIQKRLTRYQEKRDIPSVFGTSKLSRFLKTGTISIRTIFHAIYEE----ALYEDEG 258 Query: 278 AFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIID 337 +++ EL WR+FY + A YP + K + + WN D L +AW +G TGFP++D Sbjct: 259 RETFIKELAWRDFYHMIYAHYPEM-KEKEINSAFQGMRWNDDETLFEAWCKGETGFPLVD 317 Query: 338 AAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAAS 397 A MRQLN GWMHNRLRM+TASFL KD L+DWR GE YF +L+D D ASN GG+QWAAS Sbjct: 318 AGMRQLNEEGWMHNRLRMVTASFLTKDYLIDWRKGEAYFAKKLVDYDEASNIGGFQWAAS 377 Query: 398 TGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSW-LDKN-----D 451 G D+VPYFRIFNP Q KRFDP G FIR ++PEL ++ ++IH P +D+ Sbjct: 378 VGTDAVPYFRIFNPITQSKRFDPSGEFIRKYVPELEHIDEKWIHEPSKMPIDEQLKSGCV 437 Query: 452 LSLNYPLPIVDHKKACHHTLNQYYAAKKQ 480 L YPLP VDH++ ++ + AK+Q Sbjct: 438 LGDTYPLPTVDHQERRKKAISLFEEAKQQ 466 >gi|254468959|ref|ZP_05082365.1| deoxyribodipyrimidine photo-lyase [beta proteobacterium KB13] gi|207087769|gb|EDZ65052.1| deoxyribodipyrimidine photo-lyase [beta proteobacterium KB13] Length = 429 Score = 265 bits (676), Expect = 2e-68, Method: Compositional matrix adjust. Identities = 157/418 (37%), Positives = 229/418 (54%), Gaps = 38/418 (9%) Query: 60 FIYASLLQVQKSLSQKG----IVFQ--YHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYE 113 FIY L ++++L + G I+F H+ +SI +F NR YE Sbjct: 14 FIYQVLQDIKQTLKKYGSDIWILFGDPVHEIPKLAESI----------NANAIFVNRDYE 63 Query: 114 INEVRRDKLLEKRLQH-RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQA 172 V RD ++K+L +SF D VL I+ Y V++P+R ++ L+ Sbjct: 64 KYGVNRDNDVQKKLSELNKTFQSFKDQVLFEADEIVTKNNTHYSVFSPYRNNHLEKLL-- 121 Query: 173 DLRSLPVPAIRLTG-PVTPSNIPRFF---DYPFQAID-PMFPIG--EQNALHILRKFCKE 225 + V + +L NI + D F + + F I Q+ + +F K+ Sbjct: 122 -ISGSGVSSYKLDDITFEKFNIDKMLTLDDIGFNSSNISSFQIATTHQDIQKQINEF-KD 179 Query: 226 KVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNEL 285 ++ +Y + R+ PAI+G S LS + G +S R+ N + + SG+ SWLNEL Sbjct: 180 RLEHYDQTRNFPAIKGVSYLSVHNRFGTISIREMANICLQNYA------TSGSKSWLNEL 233 Query: 286 IWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNT 345 IWR+FY ++ + V G F + +++ + ++WKQG TGFPI+DAAMRQLNT Sbjct: 234 IWRDFYFQIIVNFSHVQDGHSFKLQYDNLQYENNESFFESWKQGMTGFPIVDAAMRQLNT 293 Query: 346 IGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPY 405 G+MHNRLRMI ASFL KDLL+DWR GEEYF +L+D D ++NNGGWQWAAS G D+ P+ Sbjct: 294 TGYMHNRLRMIVASFLTKDLLIDWRWGEEYFKEKLIDYDFSANNGGWQWAASVGCDAQPW 353 Query: 406 FRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDH 463 FRIFNP +Q ++FD G FI+ ++PEL+ + IH PH+ D YP PI+DH Sbjct: 354 FRIFNPLLQSQKFDSDGKFIKKYVPELSEFDKKNIHEPHAKFTPKD----YPKPIIDH 407 >gi|218904303|ref|YP_002452137.1| deoxyribodipyrimidine photolyase family protein [Bacillus cereus AH820] gi|218535120|gb|ACK87518.1| deoxyribodipyrimidine photolyase family protein [Bacillus cereus AH820] Length = 476 Score = 264 bits (675), Expect = 2e-68, Method: Compositional matrix adjust. Identities = 162/483 (33%), Positives = 258/483 (53%), Gaps = 28/483 (5%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 +V + D R+ DN AL+ A + + V+ V++ + + +++ +++ V+K Sbjct: 6 IVMFQKDFRLYDNPALFEATQSGE--VVPVYVHD----ETFSMGSASKWWLHHAIIDVKK 59 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130 L G + S ++ + S Q +T +++N Y+ + ++ ++ ++ L+H+ Sbjct: 60 QLEALGSTLIIRKGSTQEEIL----SLVEQLGITAVYWNICYDPDRLQSNQKMKMMLEHK 115 Query: 131 -VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189 +ICK F+ +LL P I YKV+TPF A + ++ + + + PV+ Sbjct: 116 GMICKEFNSHLLLEPWVIKKKDNTEYKVFTPFYNAFQKQVIHKPISKVQSIKGGNSLPVS 175 Query: 190 --PSNIPRFFDYPFQA-IDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246 S + P+ + ++ ++ E+ A ++F K+ Y E RD P S L+ Sbjct: 176 LSVSELHLLPTIPWTSHMESIWEPTEEGAYKTWKEFFSSKLASYSEGRDFPNQNAHSMLA 235 Query: 247 PYLSIGVLSPRQCW----NRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVC 302 PYLS G +S + + N+ E L K + S++ +LIWREF +L+ YP Sbjct: 236 PYLSFGQISVKLIYHYLINKSTESQCSLFEKQVN---SFIRQLIWREFSYYLLYHYPFTA 292 Query: 303 MGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLV 362 KP E WN + LL+ W++G TG+P IDA MR+L G+MHNR RM ASFLV Sbjct: 293 Y-KPLNKSFEHFPWNNEEELLRVWQKGDTGYPFIDAGMRELWQTGFMHNRTRMAVASFLV 351 Query: 363 KDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQG 422 K LL+ W+ G ++FM LLD D+A+N GWQW A +G D+ PYFRIFNP QG++FD G Sbjct: 352 KHLLIPWQEGAKWFMDTLLDADIANNTMGWQWVAGSGADASPYFRIFNPITQGEKFDKNG 411 Query: 423 TFIRHWLPELNNVPTQYIH----APHSWLDKNDLSLN--YPLPIVDHKKACHHTLNQYYA 476 +IR W+PEL ++P +YIH AP L K ++ L YPLP+VDHK A L Y + Sbjct: 412 EYIREWVPELKDMPNKYIHKPWEAPEHILQKANIQLGHTYPLPVVDHKAARERALCAYKS 471 Query: 477 AKK 479 K+ Sbjct: 472 MKE 474 >gi|229046850|ref|ZP_04192484.1| Deoxyribodipyrimidine photolyase [Bacillus cereus AH676] gi|229110596|ref|ZP_04240162.1| Deoxyribodipyrimidine photolyase [Bacillus cereus Rock1-15] gi|228672847|gb|EEL28125.1| Deoxyribodipyrimidine photolyase [Bacillus cereus Rock1-15] gi|228724483|gb|EEL75806.1| Deoxyribodipyrimidine photolyase [Bacillus cereus AH676] Length = 476 Score = 264 bits (675), Expect = 2e-68, Method: Compositional matrix adjust. Identities = 165/490 (33%), Positives = 256/490 (52%), Gaps = 42/490 (8%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 +V + D R+ DN AL+ A + + V+ V+I Q I + +++ +++ V+K Sbjct: 6 IVMFQKDFRLYDNPALFEAVQSGE--VLPVYI----QEETFSIGSASKWWLHHAVIDVKK 59 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130 L G + ++ + ++ Q +T +++N Y+ + ++ ++ ++ L+ + Sbjct: 60 QLEALGSTLIIRKGRTEEEILSLIE----QLDITAVYWNICYDPDRLQSNQKMKMMLEDK 115 Query: 131 -VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189 +ICK F+ +LL P I YKV+TPF A + ++ P P R+ Sbjct: 116 GIICKEFNSHLLLEPWIIKKKDNTEYKVFTPFYNAFQKQVI-------PKPFSRVQSIKW 168 Query: 190 PSNIPRFFDYPFQAIDPMFPIG----------EQNALHILRKFCKEKVYYYVEQRDIPAI 239 +++P + P P E+ A +KF K+ Y E RD P Sbjct: 169 GNSLPASLSVSELQLLPTIPWTSHMEVIWDPTEEGAYKTFKKFFSSKLVSYSEGRDFPGQ 228 Query: 240 QGTSQLSPYLSIGVLSPRQCW----NRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLM 295 S L+PYLS G +S + + N+ E L K + S++ +LIWREF +L+ Sbjct: 229 NVHSMLAPYLSFGQISVKLMFHYLINKSTERQCSLFEKQVN---SFIRQLIWREFSYYLL 285 Query: 296 AFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRM 355 YP + KP E WNK+ LL+ W++G TG+P IDA MR+L G+MHNR RM Sbjct: 286 YHYP-FTVYKPLNKSFEHFPWNKEEELLRVWQKGKTGYPFIDAGMRELWQTGFMHNRARM 344 Query: 356 ITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQG 415 ASFLVK LL+ W+ G ++FM LLD D+A+N GWQW A +G D+ PYFRIFNP QG Sbjct: 345 AVASFLVKHLLIPWQEGAKWFMDTLLDADIANNTMGWQWVAGSGADASPYFRIFNPITQG 404 Query: 416 KRFDPQGTFIRHWLPELNNVPTQYIH----APHSWLDKNDLSLN--YPLPIVDHKKACHH 469 ++FD G +IR W+PEL ++P +YI+ AP L K+++ L YP PIVDHK A Sbjct: 405 EKFDKNGEYIRRWVPELKDIPNKYIYKPWEAPEHILQKSNIKLGDTYPFPIVDHKAARER 464 Query: 470 TLNQYYAAKK 479 L Y + K+ Sbjct: 465 ALCAYKSMKE 474 >gi|228966105|ref|ZP_04127168.1| Deoxyribodipyrimidine photolyase [Bacillus thuringiensis serovar sotto str. T04001] gi|228793590|gb|EEM41130.1| Deoxyribodipyrimidine photolyase [Bacillus thuringiensis serovar sotto str. T04001] Length = 476 Score = 264 bits (675), Expect = 2e-68, Method: Compositional matrix adjust. Identities = 164/485 (33%), Positives = 261/485 (53%), Gaps = 32/485 (6%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 +V + D R+ DN AL+ A + + V+ V++ Q + +++ +++ V+K Sbjct: 6 IVMFQKDFRLYDNPALFEAVQSGE--VLPVYV----QDEDFLMGEASKWWLHHAVIDVKK 59 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130 L G + ++ + ++ Q +T +++N Y+ + ++ ++ ++ L+ + Sbjct: 60 QLEALGSTLIIRKGRTEEEILSLIE----QLDITAVYWNICYDPDRLQSNQKMKMMLEDK 115 Query: 131 -VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIR----LT 185 +ICK F+ +LL P I YKV+TPF A + ++ + V +I+ L Sbjct: 116 GIICKEFNSHLLLEPWIIKKKDNTEYKVFTPFYNAFQKQVIPKPISK--VQSIKWGSSLP 173 Query: 186 GPVTPSNIPRFFDYPFQA-IDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244 ++ S + P+ + I+ ++ E+ A +KF K+ Y E RD P S Sbjct: 174 ASLSVSELHLLPTIPWTSHIESIWEPTEEGAYKTFKKFFSSKLASYSEGRDFPNQNAHSM 233 Query: 245 LSPYLSIGVLSPRQCW----NRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPS 300 L+PYLS G +S + + N+ E L K + S++ +LIWREF +L+ YP Sbjct: 234 LAPYLSFGQISVKLMYHYLINKSTERQCSLFEKQVN---SFIRQLIWREFSYYLLYHYP- 289 Query: 301 VCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASF 360 + KP E WNK+ LL+ W++G TG+P IDA MR+L G+MHNR RM ASF Sbjct: 290 FTVYKPLNKNFEHFPWNKEEELLRVWQKGETGYPFIDAGMRELWQTGFMHNRTRMAVASF 349 Query: 361 LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDP 420 LVK LL+ W+ G ++FM LLD D+A+N GWQW A +G D+ PYFRIFNP QG++FD Sbjct: 350 LVKHLLIPWQEGAKWFMDTLLDADIANNTMGWQWVAGSGADASPYFRIFNPITQGEKFDK 409 Query: 421 QGTFIRHWLPELNNVPTQYIH----APHSWLDKNDLSLN--YPLPIVDHKKACHHTLNQY 474 G +IR W+PEL ++P +YIH AP L K ++ L YPLP+VDHK A L Y Sbjct: 410 NGEYIRKWVPELRDIPNKYIHKPWEAPEHILQKANIKLGNTYPLPVVDHKAARERALCAY 469 Query: 475 YAAKK 479 + K+ Sbjct: 470 KSMKE 474 >gi|49478047|ref|YP_037258.1| deoxyribodipyrimidine photolyase [Bacillus thuringiensis serovar konkukian str. 97-27] gi|49329603|gb|AAT60249.1| deoxyribodipyrimidine photolyase [Bacillus thuringiensis serovar konkukian str. 97-27] Length = 476 Score = 264 bits (674), Expect = 2e-68, Method: Compositional matrix adjust. Identities = 162/483 (33%), Positives = 258/483 (53%), Gaps = 28/483 (5%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 +V + D R+ DN AL+ A + + V+ V++ + + +++ +++ V+K Sbjct: 6 IVMFQKDFRLYDNPALFEAAQSGE--VVPVYVHD----ETFSMGSASKWWLHHAIIDVKK 59 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130 L G + S ++ + S Q +T +++N Y+ + ++ ++ ++ L+H+ Sbjct: 60 QLEALGSTLIIRKGSTQEEIL----SLVEQLGITAVYWNICYDPDRLQFNQKMKMMLEHK 115 Query: 131 -VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189 +ICK F+ +LL P I YKV+TPF A + ++ + + + PV+ Sbjct: 116 GMICKEFNSHLLLEPWVIKKKDNTEYKVFTPFYNAFQKQVIHKPISKVQSIKGGNSLPVS 175 Query: 190 --PSNIPRFFDYPFQA-IDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246 S + P+ + ++ ++ E+ A ++F K+ Y E RD P S L+ Sbjct: 176 LSVSELHLLPTIPWTSHMESIWEPTEEGAYKTWKEFFSSKLASYSEGRDFPNQNAHSMLA 235 Query: 247 PYLSIGVLSPRQCW----NRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVC 302 PYLS G +S + + N+ E L K + S++ +LIWREF +L+ YP Sbjct: 236 PYLSFGQISVKLIYHYLINKSTESQCSLFEKQVN---SFIRQLIWREFSYYLLYHYPFTA 292 Query: 303 MGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLV 362 KP E WN + LL+ W++G TG+P IDA MR+L G+MHNR RM ASFLV Sbjct: 293 Y-KPLNKSFEHFPWNNEEELLRVWQKGDTGYPFIDAGMRELWQTGFMHNRTRMAVASFLV 351 Query: 363 KDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQG 422 K LL+ W+ G ++FM LLD D+A+N GWQW A +G D+ PYFRIFNP QG++FD G Sbjct: 352 KHLLIPWQEGAKWFMDTLLDADIANNTMGWQWVAGSGADASPYFRIFNPITQGEKFDKNG 411 Query: 423 TFIRHWLPELNNVPTQYIH----APHSWLDKNDLSLN--YPLPIVDHKKACHHTLNQYYA 476 +IR W+PEL ++P +YIH AP L K ++ L YPLP+VDHK A L Y + Sbjct: 412 EYIREWVPELKDMPNKYIHKPWEAPEHILQKANIQLGHTYPLPVVDHKAARERALCAYKS 471 Query: 477 AKK 479 K+ Sbjct: 472 MKE 474 >gi|229070649|ref|ZP_04203886.1| Deoxyribodipyrimidine photolyase [Bacillus cereus F65185] gi|229080332|ref|ZP_04212857.1| Deoxyribodipyrimidine photolyase [Bacillus cereus Rock4-2] gi|228703001|gb|EEL55462.1| Deoxyribodipyrimidine photolyase [Bacillus cereus Rock4-2] gi|228712471|gb|EEL64409.1| Deoxyribodipyrimidine photolyase [Bacillus cereus F65185] Length = 476 Score = 264 bits (674), Expect = 2e-68, Method: Compositional matrix adjust. Identities = 166/485 (34%), Positives = 260/485 (53%), Gaps = 32/485 (6%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 +V + D R+ DN AL+ A + + V+ V++ Q I + ++ +++ VQK Sbjct: 6 IVMFQKDFRLYDNPALFEAVQSGE--VLPVYV----QDETFSIGSAAKWWLRHAIMDVQK 59 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130 L G + + ++ + S Q +T +++N Y+ + ++ ++ ++ L+ + Sbjct: 60 QLKALGSTLIIRKGNTQEEIL----SLIKQLDITAVYWNSCYDPDRLKSNQKMKMILEDK 115 Query: 131 -VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIR----LT 185 +ICK F+ +LL P I YKV+TPF A + ++ + V +I+ L Sbjct: 116 GIICKEFNSHLLLEPWIIKKKDNTEYKVFTPFYNAFQKQVIPKPISR--VQSIKWGNSLP 173 Query: 186 GPVTPSNIPRFFDYPFQA-IDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244 ++ S + P+ + ++ ++ E+ A +KF K+ Y E RD P S Sbjct: 174 ASLSVSELHLLPTIPWTSHMEAIWDPTEEGAYKTFKKFFSSKLVSYSEGRDFPDQNVHSM 233 Query: 245 LSPYLSIGVLSPRQCW----NRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPS 300 L+PYLS G +S + + N+ E L K + S++ +LIWREF +L+ YP Sbjct: 234 LAPYLSFGQISVKLMFHYLINKSTERQCSLFEKQVN---SFIRQLIWREFSYYLLYHYP- 289 Query: 301 VCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASF 360 + KP E WNK+ LL+ W++G TG+P IDA MR+L G+MHNR RM ASF Sbjct: 290 FTVYKPLNKSFEHFPWNKEEELLRVWQKGETGYPFIDAGMRELWQTGFMHNRARMAVASF 349 Query: 361 LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDP 420 LVK LL+ W+ G ++FM LLD D+A+N GWQW A +G D+ PYFRIFNP QG++FD Sbjct: 350 LVKHLLIPWQEGAKWFMDTLLDADIANNTMGWQWVAGSGADASPYFRIFNPITQGEKFDK 409 Query: 421 QGTFIRHWLPELNNVPTQYIH----APHSWLDKNDLSLN--YPLPIVDHKKACHHTLNQY 474 G +IR W+PEL ++P +YIH AP L K+++ L YP PIVDHK A L Y Sbjct: 410 NGEYIRRWVPELRDIPNKYIHKPWEAPEHILQKSNIKLGNTYPYPIVDHKAARERALCAY 469 Query: 475 YAAKK 479 K+ Sbjct: 470 KNMKE 474 >gi|49185961|ref|YP_029213.1| deoxyribodipyrimidine photolyase family protein [Bacillus anthracis str. Sterne] gi|65320437|ref|ZP_00393396.1| COG0415: Deoxyribodipyrimidine photolyase [Bacillus anthracis str. A2012] gi|165868433|ref|ZP_02213093.1| deoxyribodipyrimidine photolyase family protein [Bacillus anthracis str. A0488] gi|167631730|ref|ZP_02390057.1| deoxyribodipyrimidine photolyase family protein [Bacillus anthracis str. A0442] gi|167637299|ref|ZP_02395579.1| deoxyribodipyrimidine photolyase family protein [Bacillus anthracis str. A0193] gi|170684891|ref|ZP_02876116.1| deoxyribodipyrimidine photolyase family protein [Bacillus anthracis str. A0465] gi|177649852|ref|ZP_02932853.1| deoxyribodipyrimidine photolyase family protein [Bacillus anthracis str. A0174] gi|190564773|ref|ZP_03017694.1| deoxyribodipyrimidine photolyase family protein [Bacillus anthracis Tsiankovskii-I] gi|227814024|ref|YP_002814033.1| deoxyribodipyrimidine photolyase family protein [Bacillus anthracis str. CDC 684] gi|229603798|ref|YP_002867382.1| deoxyribodipyrimidine photolyase family protein [Bacillus anthracis str. A0248] gi|254685712|ref|ZP_05149571.1| deoxyribodipyrimidine photolyase family protein [Bacillus anthracis str. CNEVA-9066] gi|254723122|ref|ZP_05184910.1| deoxyribodipyrimidine photolyase family protein [Bacillus anthracis str. A1055] gi|254738183|ref|ZP_05195886.1| deoxyribodipyrimidine photolyase family protein [Bacillus anthracis str. Western North America USA6153] gi|254742647|ref|ZP_05200332.1| deoxyribodipyrimidine photolyase family protein [Bacillus anthracis str. Kruger B] gi|254752497|ref|ZP_05204533.1| deoxyribodipyrimidine photolyase family protein [Bacillus anthracis str. Vollum] gi|254761013|ref|ZP_05213037.1| deoxyribodipyrimidine photolyase family protein [Bacillus anthracis str. Australia 94] gi|270000553|ref|NP_845490.2| deoxyribodipyrimidine photolyase family protein [Bacillus anthracis str. Ames] gi|49179888|gb|AAT55264.1| deoxyribodipyrimidine photolyase family protein [Bacillus anthracis str. Sterne] gi|164715159|gb|EDR20676.1| deoxyribodipyrimidine photolyase family protein [Bacillus anthracis str. A0488] gi|167514806|gb|EDR90172.1| deoxyribodipyrimidine photolyase family protein [Bacillus anthracis str. A0193] gi|167532028|gb|EDR94664.1| deoxyribodipyrimidine photolyase family protein [Bacillus anthracis str. A0442] gi|170671151|gb|EDT21889.1| deoxyribodipyrimidine photolyase family protein [Bacillus anthracis str. A0465] gi|172083804|gb|EDT68863.1| deoxyribodipyrimidine photolyase family protein [Bacillus anthracis str. A0174] gi|190564090|gb|EDV18054.1| deoxyribodipyrimidine photolyase family protein [Bacillus anthracis Tsiankovskii-I] gi|227005678|gb|ACP15421.1| deoxyribodipyrimidine photo-lyase [Bacillus anthracis str. CDC 684] gi|229268206|gb|ACQ49843.1| deoxyribodipyrimidine photolyase family protein [Bacillus anthracis str. A0248] gi|269850227|gb|AAP26976.2| deoxyribodipyrimidine photo-lyase [Bacillus anthracis str. Ames] Length = 476 Score = 264 bits (674), Expect = 3e-68, Method: Compositional matrix adjust. Identities = 162/483 (33%), Positives = 258/483 (53%), Gaps = 28/483 (5%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 +V + D R+ DN AL+ A + + V+ V++ + + +++ +++ V+K Sbjct: 6 IVMFQKDFRLYDNPALFEAAQSGE--VVPVYVHD----ETFSMGSASKWWLHHAIIDVKK 59 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130 L G + S ++ + S Q +T +++N Y+ + ++ ++ ++ L+H+ Sbjct: 60 QLEALGSTLIIRKGSTQEEIL----SLVEQLGITAVYWNICYDPDRLQSNQKMKMMLEHK 115 Query: 131 -VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189 +ICK F+ +LL P I YKV+TPF A + ++ + + + PV+ Sbjct: 116 GMICKEFNSHLLLEPWVIKKKDNTEYKVFTPFYNAFQKQVIHKPISKVQSIKGGNSLPVS 175 Query: 190 --PSNIPRFFDYPFQA-IDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246 S + P+ + ++ ++ E+ A ++F K+ Y E RD P S L+ Sbjct: 176 LSVSELHLLPTIPWTSHMESIWEPTEEGAYKTWKEFFSSKLASYSEGRDFPNQNAHSMLA 235 Query: 247 PYLSIGVLSPRQCW----NRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVC 302 PYLS G +S + + N+ E L K + S++ +LIWREF +L+ YP Sbjct: 236 PYLSFGQISVKLIYHYLINKSTESQCSLFEKQVN---SFIRQLIWREFSYYLLYHYPFTA 292 Query: 303 MGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLV 362 KP E WN + LL+ W++G TG+P IDA MR+L G+MHNR RM ASFLV Sbjct: 293 Y-KPLNKSFEHFPWNNEEELLRVWQKGDTGYPFIDAGMRELWQTGFMHNRTRMAVASFLV 351 Query: 363 KDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQG 422 K LL+ W+ G ++FM LLD D+A+N GWQW A +G D+ PYFRIFNP QG++FD G Sbjct: 352 KHLLIPWQEGAKWFMDTLLDADIANNTMGWQWVAGSGADASPYFRIFNPITQGEKFDKNG 411 Query: 423 TFIRHWLPELNNVPTQYIH----APHSWLDKNDLSLN--YPLPIVDHKKACHHTLNQYYA 476 +IR W+PEL ++P +YIH AP L K ++ L YPLP+VDHK A L Y + Sbjct: 412 EYIRKWVPELKDMPNKYIHKPWEAPEHILQKANIQLGHTYPLPVVDHKAARERALCAYKS 471 Query: 477 AKK 479 K+ Sbjct: 472 MKE 474 >gi|229185362|ref|ZP_04312545.1| Deoxyribodipyrimidine photolyase [Bacillus cereus BGSC 6E1] gi|228598095|gb|EEK55732.1| Deoxyribodipyrimidine photolyase [Bacillus cereus BGSC 6E1] Length = 476 Score = 264 bits (674), Expect = 3e-68, Method: Compositional matrix adjust. Identities = 161/485 (33%), Positives = 260/485 (53%), Gaps = 32/485 (6%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 +V + D R+ DN AL+ A + + V+ V++ I + +++ +++ V+K Sbjct: 6 IVMFQKDFRLYDNPALFEAAQSGE--VVPVYVHD----ETFSIGSASKWWLHHAIIDVKK 59 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130 L G + S ++ + ++ Q +T +++N Y+ + ++ ++ ++ L+ + Sbjct: 60 QLEALGSTLIIRKGSTEEEILSLIE----QLGITAVYWNICYDPDRLQFNQKMKMMLEDK 115 Query: 131 -VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIR----LT 185 +ICK F+ +LL P I YKV+TPF A + ++ + V +I+ L Sbjct: 116 GMICKEFNSHLLLEPWVIKKKDNTEYKVFTPFYNAFQKQVIHKPISK--VQSIKGGNSLP 173 Query: 186 GPVTPSNIPRFFDYPFQA-IDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244 ++ S + P+ + ++ ++ E+ A +KF K+ Y E RD P S Sbjct: 174 SSLSVSELHLLPTIPWTSHMESIWEPTEEGAYKTCKKFFSSKLASYSEGRDFPNQNAHSM 233 Query: 245 LSPYLSIGVLSPRQCW----NRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPS 300 L+PYLS G +S + + N+ E L K + S++ +LIWREF +++ YP Sbjct: 234 LAPYLSFGQISVKLIYHYLINKSTESQCSLFEKQVN---SFIRQLIWREFSYYMLYHYPF 290 Query: 301 VCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASF 360 KP E WN + LL+ W++G TG+P IDA MR+L G+MHNR RM ASF Sbjct: 291 TAY-KPLNKSFEHFPWNNEKELLRVWQKGETGYPFIDAGMRELWQTGFMHNRTRMAVASF 349 Query: 361 LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDP 420 L+K LL+ W+ G ++FM LLD D+A+N GWQW A +G D+ PYFRIFNP QG++FD Sbjct: 350 LIKHLLIPWQEGAKWFMDTLLDADIANNTMGWQWVAGSGADASPYFRIFNPITQGEKFDK 409 Query: 421 QGTFIRHWLPELNNVPTQYIH----APHSWLDKNDLSLN--YPLPIVDHKKACHHTLNQY 474 G +IR W+PEL ++P +YIH AP L K ++ L YPLP+VDHK A L Y Sbjct: 410 NGEYIREWVPELKDMPNKYIHKPWEAPEHILQKANIQLGHTYPLPVVDHKAARERALCAY 469 Query: 475 YAAKK 479 + K+ Sbjct: 470 KSMKE 474 >gi|124007987|ref|ZP_01692687.1| deoxyribodipyrimidine photo-lyase [Microscilla marina ATCC 23134] gi|123986571|gb|EAY26370.1| deoxyribodipyrimidine photo-lyase [Microscilla marina ATCC 23134] Length = 447 Score = 264 bits (674), Expect = 3e-68, Method: Compositional matrix adjust. Identities = 172/494 (34%), Positives = 258/494 (52%), Gaps = 80/494 (16%) Query: 8 SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSH------FI 61 S+ + W R DLR+ DN LY A N + V+ +FI + +H + + +I Sbjct: 3 SITVFWFRRDLRLHDNTGLYEALKN-EQNVLPIFI-----FDRHILDDLEDKKDLRVAYI 56 Query: 62 YASLLQVQKSLS---QKGIVFQYHQCSNFDDSIEW----LDSYCLQQRVTKLFYNRQYEI 114 YA+L Q+Q+SL+ Q + Y + + L+ Q V ++ N YE Sbjct: 57 YAALQQIQQSLADDLQSSLKVYYDYPEQVFEQLTQAGITLNGETYQ--VKSVYTNHDYEP 114 Query: 115 NEVRRDKLLEKRLQHRVIC-KSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQAD 173 +RD+ +++ L + + SF D V+ +L +A + Y V+TP+ K +L A Sbjct: 115 YARQRDEKVQQILSNSGVAWHSFKDQVIFEKQEVLTNADKPYTVFTPYSKKWKHHLTDAH 174 Query: 174 LRSLPVPA-----IRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFC----- 223 L+ V + ++L+ + P+ P+ + + I + F Sbjct: 175 LQERLVASHAQNLLKLSPQL-----------------PLMPLEKTGFVDINKSFSSKTIK 217 Query: 224 KEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLN 283 K+ V Y + RD PA+QGTS+LS +L G +S R+ + +++ D +WLN Sbjct: 218 KQLVIDYQQNRDFPAVQGTSRLSVHLRFGTVSIRKI-VKAAQKYSD----------TWLN 266 Query: 284 ELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQL 343 ELIWREFY ++ +P V + K F P + I+W + + W +G TG+PI+DA MR+L Sbjct: 267 ELIWREFYMMILYSFPHV-VDKSFKPAYDCIQWRNNPDEFKRWCEGTTGYPIVDAGMREL 325 Query: 344 NTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSV 403 NT G+MHNR+RMITASFL K LL+DWR GE YF +LLD DL++NNGGWQWAA +G D+ Sbjct: 326 NTTGFMHNRVRMITASFLTKHLLIDWRWGEAYFAKKLLDYDLSANNGGWQWAAGSGCDAA 385 Query: 404 PYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDH 463 PYFR+FNP Q ++FD Q +IR W+PE +LS YP PIV+H Sbjct: 386 PYFRVFNPYAQTEKFDKQRQYIRQWVPEF------------------ELS-RYPAPIVEH 426 Query: 464 KKACHHTLNQYYAA 477 K A L+ Y A Sbjct: 427 KFARQRALDTYKAG 440 >gi|304391382|ref|ZP_07373324.1| cryptochrome-2 [Ahrensia sp. R2A130] gi|303295611|gb|EFL89969.1| cryptochrome-2 [Ahrensia sp. R2A130] Length = 480 Score = 264 bits (674), Expect = 3e-68, Method: Compositional matrix adjust. Identities = 165/478 (34%), Positives = 240/478 (50%), Gaps = 34/478 (7%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFI--ATPEQWRQHGISARQSHFIYASLLQV 68 ++W R DLR+ DN AL AA S V+AVF+ E R+ G + R +++ SL + Sbjct: 8 IMWFRQDLRLDDNPALIAAAE-SGKPVVAVFVFDEASEGIRKLGGAMR--WWLHHSLKSL 64 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128 K L G+ + E + + + +NR+Y E D ++ + Sbjct: 65 TKDLGALGVDLILRRGPG----AEVIFDLAKEVGAENVVWNRRYGDAEQTVDATIKGDFE 120 Query: 129 HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188 KS+ ++ P ++ YKVYTPF K + + D P G V Sbjct: 121 GE--AKSYGGIIMHEPINVRTGTGNPYKVYTPFWKKFCEMGLPRDAHPAPQEIAGFGGDV 178 Query: 189 TPSNI---------PRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAI 239 N+ P + D + P GE A R F + + Y RD+P Sbjct: 179 ASDNLDEWDLLPTKPDWSDGWLKVWTP----GESAAQTRARAFMSDDLDVYDSARDLPGD 234 Query: 240 QGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYP 299 TS+LSP+L G +SP + W ++ + K + +W+ EL+WREF HL+ +P Sbjct: 235 DRTSRLSPHLRWGEISPYRLWQMAQDGRLSAGSKARE---TWVKELVWREFSYHLLQEWP 291 Query: 300 SVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITAS 359 + + F + W D L+AW++G TG+PI+DA MRQL GWMHNR+RMI S Sbjct: 292 DLA-NENFNTKYDSFPWRSDDEQLRAWQKGQTGYPIVDAGMRQLWQTGWMHNRVRMIVGS 350 Query: 360 FLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFD 419 FLVK LL+DWR GE++F L+DGD ASN+ WQW A TG D+ P+FRIFNP +Q ++FD Sbjct: 351 FLVKHLLLDWRHGEDWFWDTLVDGDPASNSAQWQWVAGTGADAAPFFRIFNPIMQAEKFD 410 Query: 420 PQGTFIRHWLPELNNVPTQYI----HAPHSWLDKNDLSLN--YPLPIVDHKKACHHTL 471 G +I+ W+PEL +P +Y+ AP + L + L YP PIVDHK+A L Sbjct: 411 KDGVYIKKWVPELAKLPAKYLPSPWEAPLTVLRDAGVKLGDTYPRPIVDHKEARERAL 468 >gi|2126786|pir||I39818 deoxyribodipyrimidine photo-lyase (EC 4.1.99.3) - Bacillus firmus (fragment) gi|142783|gb|AAA22361.1| DNA photolyase [Bacillus firmus] Length = 339 Score = 263 bits (673), Expect = 3e-68, Method: Compositional matrix adjust. Identities = 147/335 (43%), Positives = 197/335 (58%), Gaps = 31/335 (9%) Query: 155 YKVYTPFRKALIQN------LVQADLRSLPVPAIRLTGPVTPS-----NIPRFFDYPFQA 203 YKV+TP+ KA + +++ D+ L + T P + N+ + Y + A Sbjct: 11 YKVFTPYYKAWAKERKRTPAVIKRDV--LLGSVHKGTAPDREAETLFNNLIKKCSYDWSA 68 Query: 204 IDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRL 263 I GE++A+ L+ F K+++ Y RD P+I GTS+LSPY+ G +S R + + Sbjct: 69 I------GEEHAIKRLQMFTKKRLSGYKANRDFPSITGTSRLSPYIKTGAVSSRSIYYHI 122 Query: 264 KEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLL 323 D A ++L EL WR+FYR ++ FY C + + ++ W+ D L Sbjct: 123 LNAEAD-----SYSAETFLKELAWRDFYR-MVHFYEPDCKDREIMEGYRELNWSHDQDDL 176 Query: 324 QAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDG 383 +WK+G TGFPI+DA MRQL GWMHNRLRMITASFL KDLL+DWR+GE YF L+D Sbjct: 177 TSWKRGETGFPIVDAGMRQLLNEGWMHNRLRMITASFLTKDLLIDWRLGERYFERMLIDY 236 Query: 384 DLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAP 443 D +SN GGWQWAAS G D+VPYFRIFNP Q KRFD GT+IR ++PELN+VP YIH P Sbjct: 237 DPSSNIGGWQWAASVGTDAVPYFRIFNPVTQSKRFDENGTYIRTYIPELNHVPDHYIHEP 296 Query: 444 HSWLD------KNDLSLNYPLPIVDHKKACHHTLN 472 + K L +YPLPIVDH K L+ Sbjct: 297 WKMSEEEQVKYKCRLDEDYPLPIVDHSKQRKKALS 331 >gi|254514439|ref|ZP_05126500.1| DNA photolyase [gamma proteobacterium NOR5-3] gi|219676682|gb|EED33047.1| DNA photolyase [gamma proteobacterium NOR5-3] Length = 482 Score = 263 bits (673), Expect = 3e-68, Method: Compositional matrix adjust. Identities = 169/488 (34%), Positives = 251/488 (51%), Gaps = 46/488 (9%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFI---ATPEQWRQHGISARQSHFIYASLLQ 67 ++W R DLRI D AL AA + KV+ ++I P W G S +++ SL Sbjct: 6 VLWFRQDLRINDLPALQAATRDGQ-KVLPIYILDEDAPGDWSPGGAS---RWWLHHSLTA 61 Query: 68 VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127 + + + G + + SI L C ++ +R+YE + ++ L K L Sbjct: 62 LAQDIDHLGGTLIFRKGKTL--SI--LRDVCEASGARAIYCSRRYEPWAGQEEQTLYKAL 117 Query: 128 QHRVIC-KSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 I K F S+L PGS+L +KV+TPF +A +N V P++ Sbjct: 118 DSDNISFKRFPGSLLHEPGSVLTQGGGPFKVFTPFWRACRRNEVPQPAEK---PSVAWAE 174 Query: 187 PVTPSNI------PRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ 240 + + PR D+ + + + GE A L F + V Y ++RD+P++ Sbjct: 175 GIQSDTLDAWKLLPRDPDWA-ASWNEFWQPGENGAQARLHAFLDDTVSRYADERDLPSVD 233 Query: 241 GTSQLSPYLSIGVLSPRQCW-----NRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLM 295 TS++S +L G +SPRQ W +L++ D I + EL WREF HL+ Sbjct: 234 ATSRMSAHLHHGEISPRQIWAMCEQKKLEQPHSDTAIN------KFQAELGWREFSYHLL 287 Query: 296 AFYPSVCMGKPFIPWTEKIE---WNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNR 352 F+P + P P+ E W + LQAW++G TG+PI+DA MR+L G MHNR Sbjct: 288 HFFPHL----PETPFKENFSGFPWQANETYLQAWQRGQTGYPIVDAGMRELWATGIMHNR 343 Query: 353 LRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPT 412 +RM+ ASFL K LL WR GE++F L+D DLASN WQW A +G D+ PYFRIFNP Sbjct: 344 VRMVVASFLCKHLLQHWRCGEDWFWDTLVDADLASNGCSWQWVAGSGADAAPYFRIFNPV 403 Query: 413 IQGKRFDPQGTFIRHWLPELNNVPTQYIH----APHSWLDKNDLSL--NYPLPIVDHKKA 466 QG++FD QG ++R W+PE+ + +Y+H AP L + ++L +YP PIVDH++A Sbjct: 404 TQGEKFDKQGDYVRRWVPEIAALSNKYLHKPWEAPAEVLSQAGVTLGADYPEPIVDHREA 463 Query: 467 CHHTLNQY 474 L+ Y Sbjct: 464 RQAALDAY 471 >gi|6324962|ref|NP_015031.1| Phr1p [Saccharomyces cerevisiae S288c] gi|130158|sp|P05066|PHR_YEAST RecName: Full=Deoxyribodipyrimidine photo-lyase, mitochondrial; AltName: Full=DNA photolyase; AltName: Full=Photoreactivating enzyme; Flags: Precursor gi|4176|emb|CAA26944.1| unnamed protein product [Saccharomyces cerevisiae] gi|1420831|emb|CAA99718.1| PHR1 [Saccharomyces cerevisiae] gi|151945461|gb|EDN63704.1| photolyase [Saccharomyces cerevisiae YJM789] gi|207340799|gb|EDZ69038.1| YOR386Wp-like protein [Saccharomyces cerevisiae AWRI1631] gi|256269949|gb|EEU05204.1| Phr1p [Saccharomyces cerevisiae JAY291] gi|259149859|emb|CAY86663.1| Phr1p [Saccharomyces cerevisiae EC1118] gi|285815252|tpg|DAA11145.1| TPA: Phr1p [Saccharomyces cerevisiae S288c] gi|323346400|gb|EGA80689.1| Phr1p [Saccharomyces cerevisiae Lalvin QA23] Length = 565 Score = 263 bits (673), Expect = 3e-68, Method: Compositional matrix adjust. Identities = 166/506 (32%), Positives = 257/506 (50%), Gaps = 50/506 (9%) Query: 7 MSVHLVWLRNDLRITDNKALYAAC--------HNSDAKVIAVFIATPEQWRQHGISARQS 58 +S + W RNDLR+ DN LY + N+ AK+ AV++ + WR H S + Sbjct: 74 VSTVMHWFRNDLRLYDNVGLYKSVALFQQLRQKNAKAKLYAVYVINEDDWRAHMDSGWKL 133 Query: 59 HFIYASLLQVQKSLSQKGI---VFQYHQ----CSNFDDSIEWLDSYCLQQRV---TKLFY 108 FI +L +Q+SL++ I ++++H SN + +E+ C+ T + Sbjct: 134 MFIMGALKNLQQSLAELHIPLLLWEFHTPKSTLSNSKEFVEFFKEKCMNVSSGTGTIITA 193 Query: 109 NRQYEINEVRRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQN 168 N +Y+ +E+ RD L + HR+ K + DS ++ PG I Y V+TP+ K + Sbjct: 194 NIEYQTDELYRDIRLLENEDHRLQLKYYHDSCIVAPGLITTDRGTNYSVFTPWYKKWVLY 253 Query: 169 LVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDP-------------MFPIGEQNA 215 + + + + + P+ + F PFQ P + + E+ A Sbjct: 254 VNNYKKSTSEICHLHIIEPLKYNET--FELKPFQYSLPDEFLQYIPKSKWCLPDVSEEAA 311 Query: 216 LHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPR----QCWNRLKEEFVDLL 271 L L+ F K Y ++D+ + GTS LS Y++ G +S R Q + + + Sbjct: 312 LSRLKDFLGTKSSKYNNEKDMLYLGGTSGLSVYITTGRISTRLIVNQAFQSCNGQIMSKA 371 Query: 272 IKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYT 331 +K S +++ E+ WR+FYRH M +P MG P+ T I+W + + W G T Sbjct: 372 LKDNSSTQNFIKEVAWRDFYRHCMCNWPYTSMGMPYRLDTLDIKWENNPVAFEKWCTGNT 431 Query: 332 GFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGG 391 G PI+DA MR+L G+++NR RMITASFL K+LL+DWR GE +FM L+DGD +SN GG Sbjct: 432 GIPIVDAIMRKLLYTGYINNRSRMITASFLSKNLLIDWRWGERWFMKHLIDGDSSSNVGG 491 Query: 392 WQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND 451 W + +STG D+ PYFR+FN IQ K++DPQ F++ W+PEL + +N Sbjct: 492 WGFCSSTGIDAQPYFRVFNMDIQAKKYDPQMIFVKQWVPELIS-------------SENK 538 Query: 452 LSLNYPLPIVDHKKACHHTLNQYYAA 477 NYP P+VD K + L Y A Sbjct: 539 RPENYPKPLVDLKHSRERALKVYKDA 564 >gi|206969086|ref|ZP_03230041.1| deoxyribodipyrimidine photolyase family protein [Bacillus cereus AH1134] gi|206736127|gb|EDZ53285.1| deoxyribodipyrimidine photolyase family protein [Bacillus cereus AH1134] Length = 476 Score = 263 bits (673), Expect = 3e-68, Method: Compositional matrix adjust. Identities = 165/485 (34%), Positives = 260/485 (53%), Gaps = 32/485 (6%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 +V + D R+ DN AL+ A + + V+ V++ Q I + ++ +++ VQK Sbjct: 6 IVMFQKDFRLYDNPALFEAVQSGE--VLPVYV----QDETFSIGSAAKWWLRHAIMDVQK 59 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130 L G + + ++ + S Q +T +++N Y+ + ++ ++ ++ L+ + Sbjct: 60 QLKALGSTLIIRKGNTQEEIL----SLIKQLDITAVYWNSCYDPDRLKSNQKMKMILEDK 115 Query: 131 -VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIR----LT 185 +ICK F+ +LL P I YKV+TPF A + ++ + V +I+ L Sbjct: 116 GIICKEFNSHLLLEPWIIKKKDNTEYKVFTPFYNAFQKQVIPKPISR--VQSIKWGNSLP 173 Query: 186 GPVTPSNIPRFFDYPFQA-IDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244 ++ S + P+ + ++ ++ E+ A +KF K+ Y E RD P S Sbjct: 174 ASLSVSELHLLPTIPWTSHMEAIWDPTEEGAYKTFKKFFSSKLASYSEGRDFPDQNVHSM 233 Query: 245 LSPYLSIGVLSPRQCW----NRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPS 300 L+PYLS G +S + + N+ E L K + S++ +LIWREF +L+ YP Sbjct: 234 LAPYLSFGQISVKLMFHYLINKSTERQCSLFEKQVN---SFIRQLIWREFSYYLLYHYP- 289 Query: 301 VCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASF 360 + KP E W+K+ LL W++G TG+P IDA MR+L G+MHNR RM ASF Sbjct: 290 FTVSKPLNKSFENFPWDKEEELLSVWQKGETGYPFIDAGMRELWQTGFMHNRARMAVASF 349 Query: 361 LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDP 420 LVK LL+ W+ G ++FM LLD D+A+N GWQW A +G D+ PYFRIFNP QG++FD Sbjct: 350 LVKHLLIPWQEGAKWFMDTLLDADIANNTMGWQWVAGSGADASPYFRIFNPITQGEKFDK 409 Query: 421 QGTFIRHWLPELNNVPTQYIH----APHSWLDKNDLSLN--YPLPIVDHKKACHHTLNQY 474 G +IR W+PEL+++P +YIH AP L K ++ L YP PIVDHK A L Y Sbjct: 410 NGEYIRRWVPELSDIPNKYIHKPWEAPAHILQKANIKLGDTYPYPIVDHKAARERALCAY 469 Query: 475 YAAKK 479 + K+ Sbjct: 470 KSMKE 474 >gi|148241324|ref|YP_001226481.1| deoxyribodipyrimidine photolyase [Synechococcus sp. RCC307] gi|147849634|emb|CAK27128.1| Deoxyribodipyrimidine photolyase [Synechococcus sp. RCC307] Length = 467 Score = 263 bits (673), Expect = 4e-68, Method: Compositional matrix adjust. Identities = 169/469 (36%), Positives = 244/469 (52%), Gaps = 26/469 (5%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M L W R DLR+ DN L AA +V+ VF+ P + ++ + F+ SL Sbjct: 1 MGPWLFWHRRDLRLADNLGL-AAVSAITPEVMGVFVLDPAELEHPTMAPARRWFLLESLR 59 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 ++Q+ Q G + + +E L Q + +NR E +RD+ L Sbjct: 60 ELQQRWRQAGSQLLLLE----GNPVELLPRLAQQLGAAGVAWNRDVEPLVRQRDRELAAA 115 Query: 127 LQHRVICKSFD-DSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185 L+ + + D D +L+PP + Y+VY P+ ++ + Q + +P P+ L Sbjct: 116 LKAIGVRVAADWDQLLVPPEQLKTGGGDPYRVYGPYWRSWEK---QPKAKPVPAPS-ELK 171 Query: 186 GPVTP--SNIPRFFDYPFQAID-----PMFPIGEQNALHILRKFCKEKVYYYVEQRDIPA 238 + P S +P + P + + P P GE AL L F + +Y E R++P Sbjct: 172 ALLKPDLSGLPVLNEVPVEPWEGADLCPCRP-GETAALEQLEHFAARAMEHYCEGRNLPG 230 Query: 239 IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFS-WLNELIWREFYRHLMAF 297 +GTS LS L G LSPR W + + + + + W EL WREFY+ + Sbjct: 231 DEGTSTLSAALRAGSLSPRTAWAASLDVWSHCRSDEQRQSVTVWQQELAWREFYQQALFH 290 Query: 298 YPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMIT 357 +P + G P+ P + W D L+AW+ G TG PI+DAAMRQL G+MHNR RMI Sbjct: 291 FPELADG-PYRPQWRQFPWEDDPVRLKAWQDGLTGVPIVDAAMRQLVQTGFMHNRCRMIV 349 Query: 358 ASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKR 417 ASFLVKDL+ DWR GE +FM+ +DGDLA+NNGGWQW+AS+G D P RIFNP Q + Sbjct: 350 ASFLVKDLICDWRHGEAFFMAHEVDGDLAANNGGWQWSASSGMDPKP-LRIFNPFTQASK 408 Query: 418 FDPQGTFIRHWLPELNNVPTQ-YIHAPHSWLDKNDLSLNYPLPIVDHKK 465 FDP+ T+IR WLPEL ++ T+ I L++ YP PIV+HK+ Sbjct: 409 FDPEATYIRRWLPELAHINTKDLISGDIGALERR----GYPEPIVNHKQ 453 >gi|190407676|gb|EDV10943.1| photolyase [Saccharomyces cerevisiae RM11-1a] Length = 565 Score = 263 bits (673), Expect = 4e-68, Method: Compositional matrix adjust. Identities = 166/506 (32%), Positives = 257/506 (50%), Gaps = 50/506 (9%) Query: 7 MSVHLVWLRNDLRITDNKALYAAC--------HNSDAKVIAVFIATPEQWRQHGISARQS 58 +S + W RNDLR+ DN LY + N+ AK+ AV++ + WR H S + Sbjct: 74 VSTVMHWFRNDLRLYDNVGLYKSVALFQQLRQKNAKAKLYAVYVINEDDWRAHMDSGWKL 133 Query: 59 HFIYASLLQVQKSLSQKGI---VFQYHQ----CSNFDDSIEWLDSYCLQQRV---TKLFY 108 FI +L +Q+SL++ I ++++H SN + +E+ C+ T + Sbjct: 134 MFIMGALKNLQQSLAELHIPLLLWEFHTPKSTLSNSKEFVEFFKEKCMNVSSGTGTIITA 193 Query: 109 NRQYEINEVRRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQN 168 N +Y+ +E+ RD L + HR+ K + DS ++ PG I Y V+TP+ K + Sbjct: 194 NIEYQTDELYRDIRLLENEDHRLQLKYYHDSCIVTPGLITTDRGTNYSVFTPWYKKWVLY 253 Query: 169 LVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDP-------------MFPIGEQNA 215 + + + + + P+ + F PFQ P + + E+ A Sbjct: 254 VNNYKKSTSEICHLHIIEPLKYNET--FELKPFQYSLPDEFLQYIPKSKWCLPDVSEEAA 311 Query: 216 LHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPR----QCWNRLKEEFVDLL 271 L L+ F K Y ++D+ + GTS LS Y++ G +S R Q + + + Sbjct: 312 LSRLKDFLGTKSSKYNNEKDMLYLGGTSGLSVYITTGRISTRLIVNQAFQSCNGQIMSKA 371 Query: 272 IKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYT 331 +K S +++ E+ WR+FYRH M +P MG P+ T I+W + + W G T Sbjct: 372 LKDNSSTQNFIKEVAWRDFYRHCMCNWPYTSMGMPYRLDTLDIKWENNPVAFEKWCTGNT 431 Query: 332 GFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGG 391 G PI+DA MR+L G+++NR RMITASFL K+LL+DWR GE +FM L+DGD +SN GG Sbjct: 432 GIPIVDAIMRKLLYTGYINNRSRMITASFLSKNLLIDWRWGERWFMKHLIDGDSSSNVGG 491 Query: 392 WQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND 451 W + +STG D+ PYFR+FN IQ K++DPQ F++ W+PEL + +N Sbjct: 492 WGFCSSTGIDAQPYFRVFNMDIQAKKYDPQMIFVKQWVPELIS-------------SENK 538 Query: 452 LSLNYPLPIVDHKKACHHTLNQYYAA 477 NYP P+VD K + L Y A Sbjct: 539 RPENYPKPLVDLKHSRERALKVYKDA 564 >gi|221633352|ref|YP_002522577.1| deoxyribodipyrimidine photo-lyase [Thermomicrobium roseum DSM 5159] gi|221156145|gb|ACM05272.1| deoxyribodipyrimidine photo-lyase [Thermomicrobium roseum DSM 5159] Length = 467 Score = 263 bits (673), Expect = 4e-68, Method: Compositional matrix adjust. Identities = 167/498 (33%), Positives = 262/498 (52%), Gaps = 59/498 (11%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M+ + W+R DLR+ DN+AL AA + +++ +F+ P S R++ F++A+L Sbjct: 1 MTTVVWWVRRDLRLHDNQALAAALTRA-RELVPLFVLDPALLAGPTSSQRRNAFLFAALR 59 Query: 67 QVQKSLSQKG--IVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLE 124 + +L ++G ++ + + L + + T + RRD+ + Sbjct: 60 SLDAALRRRGSRLIVRAGRPEQV------LPTVVRESGATLVMAEADGSPYARRRDEAVA 113 Query: 125 KRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIR- 183 + + +++ + S L P GSI + Y+VY+ FR+A + LP+P+ + Sbjct: 114 RSVPLQLV----EGSTLRPLGSIRAPTGEPYRVYSQFRRAWFR---------LPIPSPQD 160 Query: 184 --------------LTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYY 229 + P+ S + A+ F E A L+ F + + Sbjct: 161 ILPAPPRLPPVPRLASEPIPESPL---------AVPERFAPSEDAARQRLQHFLAQGLAS 211 Query: 230 YVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWRE 289 Y +R+ G+SQLSPY G+LS R+ W ++D +GA +WL+EL+WRE Sbjct: 212 YHLRRNALDGSGSSQLSPYFRFGLLSVREAWC-AAARYLDE-PDAAAGARAWLDELLWRE 269 Query: 290 FYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWM 349 FY+HL+A +P P + W + L W++G TGFP++DAAMRQL + GWM Sbjct: 270 FYQHLLAAWPESARMS-MQPEFRDVAWPGSNDALARWQEGRTGFPVVDAAMRQLVSEGWM 328 Query: 350 HNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIF 409 NR RMI ASFL K LLVDWR GE +F +L+DGDLA+N GGWQW+A TG D+ PYFRIF Sbjct: 329 SNRARMIVASFLSKLLLVDWREGERFFRRELVDGDLAANVGGWQWSAGTGTDAAPYFRIF 388 Query: 410 NPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSL--------NYPLPIV 461 NP +QG++ DP G+++R WLPEL NVP +Y+ AP W ++ L +YP PIV Sbjct: 389 NPVLQGEQHDPNGSWVRTWLPELANVPREYLFAP--WRMPIEVQLRAGCRIGHDYPAPIV 446 Query: 462 DHKKACHHTLNQYYAAKK 479 +++ A L + + ++ Sbjct: 447 EYESARARALEWFRSVRQ 464 >gi|118478461|ref|YP_895612.1| deoxyribodipyrimidine photo-lyase type I [Bacillus thuringiensis str. Al Hakam] gi|196042568|ref|ZP_03109807.1| deoxyribodipyrimidine photolyase family protein [Bacillus cereus 03BB108] gi|118417686|gb|ABK86105.1| deoxyribodipyrimidine photo-lyase type I [Bacillus thuringiensis str. Al Hakam] gi|196026052|gb|EDX64720.1| deoxyribodipyrimidine photolyase family protein [Bacillus cereus 03BB108] Length = 476 Score = 263 bits (673), Expect = 4e-68, Method: Compositional matrix adjust. Identities = 161/485 (33%), Positives = 260/485 (53%), Gaps = 32/485 (6%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 +V + D R+ DN AL+ A + + V+ V++ I + +++ +++ V+K Sbjct: 6 IVMFQKDFRLYDNPALFEAAQSGE--VVPVYVHD----ETFSIGSASKWWLHHAIIDVKK 59 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130 L G + S ++ + ++ Q +T +++N Y+ + ++ ++ ++ L+ + Sbjct: 60 QLEALGSTLIIRKGSTEEEILSLIE----QLGITAVYWNICYDPDRLQFNQKMKMMLEDK 115 Query: 131 -VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIR----LT 185 +ICK F+ +LL P I YKV+TPF A + ++ + V +I+ L Sbjct: 116 GMICKEFNSHLLLEPWVIKKKDNTEYKVFTPFYNAFQKQVIHKPISK--VQSIKGGNSLP 173 Query: 186 GPVTPSNIPRFFDYPFQA-IDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244 ++ S + P+ + ++ ++ E+ A +KF K+ Y E RD P S Sbjct: 174 SSLSVSELHLLPTIPWTSHMESIWEPTEEGAYKTCKKFFSSKLASYSEGRDFPNQNAHSM 233 Query: 245 LSPYLSIGVLSPRQCW----NRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPS 300 L+PYLS G +S + + N+ E L K + S++ +LIWREF +++ YP Sbjct: 234 LAPYLSFGQISVKLIYHYLINKSTESQCSLFEKQVN---SFIRQLIWREFSYYMLYHYPF 290 Query: 301 VCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASF 360 KP E WN + LL+ W++G TG+P IDA MR+L G+MHNR RM ASF Sbjct: 291 TAY-KPLNKSFEHFPWNNEKELLRVWQKGETGYPFIDAGMRELWQTGFMHNRTRMAVASF 349 Query: 361 LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDP 420 L+K LL+ W+ G ++FM LLD D+A+N GWQW A +G D+ PYFRIFNP QG++FD Sbjct: 350 LIKHLLIPWQEGAKWFMDTLLDADIANNTMGWQWVAGSGADASPYFRIFNPITQGEKFDK 409 Query: 421 QGTFIRHWLPELNNVPTQYIH----APHSWLDKNDLSLN--YPLPIVDHKKACHHTLNQY 474 G +IR W+PEL ++P +YIH AP L K ++ L YPLP+VDHK A L Y Sbjct: 410 NGEYIRKWVPELKDMPNKYIHKPWEAPEHILQKANIQLGHTYPLPVVDHKAARERALCAY 469 Query: 475 YAAKK 479 + K+ Sbjct: 470 KSMKE 474 >gi|186682403|ref|YP_001865599.1| DNA photolyase, FAD-binding [Nostoc punctiforme PCC 73102] gi|186464855|gb|ACC80656.1| DNA photolyase, FAD-binding [Nostoc punctiforme PCC 73102] Length = 481 Score = 263 bits (672), Expect = 4e-68, Method: Compositional matrix adjust. Identities = 171/468 (36%), Positives = 241/468 (51%), Gaps = 26/468 (5%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 L W R DLRI+DN L AA S KV+ VF P + ++ + ++ L ++Q+ Sbjct: 6 LFWHRRDLRISDNTGLAAAKRRS-PKVVGVFCLDPHILERDDVAPVRVTYMIGCLQKLQE 64 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130 +Q G D ++ + + +F+N E RD+ + L+ + Sbjct: 65 RYAQVGSQLLILHA----DPVQAIPALAEAINAKAVFWNWDVEPYSQERDRTIINALKEK 120 Query: 131 VI--CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQ----NLVQA-----DLRSLPV 179 I D +L P I Y VYTPF K I N V+ L Sbjct: 121 GIEFLNQNWDQILNSPDEIRTGGNSPYTVYTPFWKNWITKPKANPVETLQNVEGLTEAEQ 180 Query: 180 PAIRLTGPVT-PSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPA 238 +L+G +T PS F + Q I GE A L +F + + Y EQR+ PA Sbjct: 181 EIAKLSGSLTLPSAKDLGFIWDEQLI---ISPGEAAAQERLEEFTNKAITEYQEQRNFPA 237 Query: 239 IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKS-GAFSWLNELIWREFYRHLMAF 297 + GTSQLS L GV+ R W E + + + +W EL WREFY+H M Sbjct: 238 VDGTSQLSAALKFGVIGIRTVWQATIEALENSRSEETAVNIRTWQQELAWREFYQHAMYN 297 Query: 298 YPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMIT 357 +P + G F + W + QAW +G TG+PI+DAAMRQ+N GWMHNR RMI Sbjct: 298 FPELADGA-FRDTFKNFPWETNEEHFQAWCEGRTGYPIVDAAMRQMNESGWMHNRCRMIV 356 Query: 358 ASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKR 417 ASFL KDLL++ ++GE+YFM L+DGDL++NNGGWQW+AS+G D P RIFNP Q ++ Sbjct: 357 ASFLTKDLLINPQLGEKYFMKHLIDGDLSANNGGWQWSASSGMDPKP-VRIFNPASQTQK 415 Query: 418 FDPQGTFIRHWLPELNNVPTQY-IHAPHSWLDKNDLSLNYPLPIVDHK 464 FDP+G +IR W+ EL +V T+Y + L+++ ++ YP PIVDHK Sbjct: 416 FDPEGEYIRQWVSELRSVDTEYLVTGKIPPLERH--AVGYPDPIVDHK 461 >gi|228959394|ref|ZP_04121085.1| Deoxyribodipyrimidine photolyase [Bacillus thuringiensis serovar pakistani str. T13001] gi|228800294|gb|EEM47220.1| Deoxyribodipyrimidine photolyase [Bacillus thuringiensis serovar pakistani str. T13001] Length = 476 Score = 263 bits (672), Expect = 4e-68, Method: Compositional matrix adjust. Identities = 165/490 (33%), Positives = 256/490 (52%), Gaps = 42/490 (8%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 +V + D R+ DN AL+ A + + V+ V+I Q I + +++ +++ V+K Sbjct: 6 IVMFQKDFRLYDNLALFEAVQSGE--VLPVYI----QDETFSIGSASKWWLHHAVIDVKK 59 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130 L G + ++ + ++ Q +T +++N Y+ + ++ ++ ++ L+ + Sbjct: 60 QLEALGSTLIIRKGRTEEEILSLIE----QLDITAVYWNICYDPDRLQSNQKMKMMLEDK 115 Query: 131 -VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189 +ICK F+ +LL P I YKV+TPF A + ++ P P R+ Sbjct: 116 GIICKEFNSHLLLEPWIIKKKDNTEYKVFTPFYNAFQKQVI-------PKPFSRVQSIKW 168 Query: 190 PSNIPRFFDYPFQAIDPMFPIG----------EQNALHILRKFCKEKVYYYVEQRDIPAI 239 +++P + P P E+ A +KF K+ Y E RD P Sbjct: 169 GNSLPASLSVSELQLLPTIPWTSHMEVIWDPTEEGAYKTFKKFFSSKLVSYSEGRDFPGQ 228 Query: 240 QGTSQLSPYLSIGVLSPRQCW----NRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLM 295 S L+PYLS G +S + + N+ E L K + S++ +LIWREF +L+ Sbjct: 229 NVHSMLAPYLSFGQISVKLMFHYLINKSTERQCSLFEKQVN---SFIRQLIWREFSYYLL 285 Query: 296 AFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRM 355 YP + KP E W+K+ LL+ W++G TG+P IDA MR+L G+MHNR RM Sbjct: 286 YHYP-FTVYKPLNKSFENFPWDKEEELLRVWQKGKTGYPFIDAGMRELWQTGFMHNRARM 344 Query: 356 ITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQG 415 ASFLVK LL+ W+ G ++FM LLD D+A+N GWQW A +G D+ PYFRIFNP QG Sbjct: 345 AVASFLVKHLLIPWQEGAKWFMDTLLDADIANNTMGWQWVAGSGADASPYFRIFNPITQG 404 Query: 416 KRFDPQGTFIRHWLPELNNVPTQYIH----APHSWLDKNDLSLN--YPLPIVDHKKACHH 469 ++FD G +IR W+PEL ++P +YIH AP L K+++ L YP PIVDHK A Sbjct: 405 EKFDKNGEYIRRWVPELRDIPNKYIHKPWEAPEHILQKSNIKLGDTYPYPIVDHKAARER 464 Query: 470 TLNQYYAAKK 479 L Y + K+ Sbjct: 465 ALCAYKSMKE 474 >gi|172170|gb|AAA34875.1| photolyase (EC 4.1.99.3) [Saccharomyces cerevisiae] Length = 565 Score = 263 bits (672), Expect = 4e-68, Method: Compositional matrix adjust. Identities = 165/506 (32%), Positives = 257/506 (50%), Gaps = 50/506 (9%) Query: 7 MSVHLVWLRNDLRITDNKALYAAC--------HNSDAKVIAVFIATPEQWRQHGISARQS 58 +S + W RNDLR+ DN LY + N+ AK+ AV++ + WR H S + Sbjct: 74 VSTAMHWFRNDLRLYDNVGLYKSVALFQQLRQKNAKAKLYAVYVINEDDWRAHMDSGWKL 133 Query: 59 HFIYASLLQVQKSLSQKGI---VFQYH----QCSNFDDSIEWLDSYCLQQRV---TKLFY 108 FI +L +Q+SL++ I ++++H SN + +E+ C+ T + Sbjct: 134 MFIMGALKNLQQSLAELHIPLLLWEFHTPKSSLSNTKEFVEFFKEKCMNVSSGTGTIITA 193 Query: 109 NRQYEINEVRRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQN 168 N +Y+ +E+ RD L + HR+ K + DS ++ PG I Y V+TP+ K + Sbjct: 194 NIEYQTSELYRDIRLLENEDHRLQLKYYHDSCIVAPGLITTDRGTNYSVFTPWYKKWVLY 253 Query: 169 LVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDP-------------MFPIGEQNA 215 + + + + + P+ + F PFQ P + + E+ A Sbjct: 254 VNNYKKSTSEICHLHIIEPLKYNET--FELKPFQYSLPDEFLQYIPKSKWCLPDVSEEAA 311 Query: 216 LHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPR----QCWNRLKEEFVDLL 271 L L+ F K Y ++D+ + GTS LS Y++ G + R Q + E+ + Sbjct: 312 LSRLKDFLGTKSSKYNNEKDMLYLGGTSGLSVYITTGRIRTRLIVNQAFQSCNEQIMSKA 371 Query: 272 IKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYT 331 +K S +++ E+ WR+FYRH M +P MG P+ T I+W + + W G T Sbjct: 372 LKDNSSTQNFIKEVAWRDFYRHCMCNWPYTSMGMPYRLDTLDIKWENNPVAFEKWCTGNT 431 Query: 332 GFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGG 391 G PI+DA MR+L G+++NR RMITASFL K+LL+DWR G+ +FM L+DGD +SN GG Sbjct: 432 GIPIVDAIMRKLLYTGYINNRSRMITASFLSKNLLIDWRWGKRWFMKHLIDGDSSSNVGG 491 Query: 392 WQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND 451 W + +STG D+ PYFR+FN IQ K++DPQ F++ W+PEL + +N Sbjct: 492 WGFCSSTGIDAQPYFRVFNMDIQAKKYDPQMIFVKQWVPELIS-------------SENK 538 Query: 452 LSLNYPLPIVDHKKACHHTLNQYYAA 477 NYP P+VD K + L Y A Sbjct: 539 RPENYPKPLVDLKHSRERALKVYKDA 564 >gi|221134512|ref|ZP_03560817.1| DNA photolyase [Glaciecola sp. HTCC2999] Length = 487 Score = 263 bits (672), Expect = 5e-68, Method: Compositional matrix adjust. Identities = 168/488 (34%), Positives = 251/488 (51%), Gaps = 30/488 (6%) Query: 11 LVWLRNDLRITDNKALYAACH--NSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 ++W R+DLR+ DN ALY A V+ +FI + +++ SL + Sbjct: 7 IMWFRHDLRLNDNPALYRAIELAGEHGTVLPIFIHDTSAPDLAKLGEASQWWLHQSLASL 66 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128 S Q +FQ D + ++S Q T + +NR YE ++ RD ++ L+ Sbjct: 67 SASTGQHLQLFQ-------GDPLAIIESLINQYDATHVIWNRGYEPWQITRDSHIKATLK 119 Query: 129 HRVICKSFDDSVLLPPGSILNHALQMYKVYTPF-RKALIQNLVQADLRSLP-----VPAI 182 V S + +L P +L YKV+TP+ RK + S+P I Sbjct: 120 DCVEVLSCNGHLLWEPMQVLKKDNTPYKVFTPYYRKGCLTRSAPRYPESIPEHLPWATRI 179 Query: 183 RLTGPVTPSNIPRFFDYP----FQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPA 238 T P + P + I + GEQ A L + +E Y E R++PA Sbjct: 180 NSTNIFEPLTLDELKLMPSIQWYDTIAAQWQPGEQGAKDRLATYIEEAAGRYREDRNLPA 239 Query: 239 IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSG-AFSWLNELIWREFYRHLMAF 297 ++GTS LSP+L G +S W +K+ F D P++ A ++L+EL WREF +L+ Sbjct: 240 VKGTSLLSPHLHFGEISVNTVWYAIKDAFKD---DPENEHADTYLSELGWREFSHYLLFH 296 Query: 298 YPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMIT 357 +P + + F W L+AW+ G TG PI+DA MR+L G+MHNR+RMI Sbjct: 297 FPHI-QTENFSSKFNVFPWRSSPEELKAWQFGNTGIPIVDAGMRELYQTGYMHNRVRMIV 355 Query: 358 ASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKR 417 SFLVK+LL+DWR GE +F LLD D+A+N+ WQW A +G D+ PYFRIFNP +QG++ Sbjct: 356 GSFLVKNLLIDWREGERWFWDCLLDADMAANSASWQWVAGSGADASPYFRIFNPILQGEK 415 Query: 418 FDPQGTFIRHWLPELNNVPTQYIH----APHSWLDKNDLSL--NYPLPIVDHKKACHHTL 471 FD QG +++H+ PEL +P ++IH AP + L ++ L NYP PIVD K + L Sbjct: 416 FDKQGDYVKHYCPELRLLPPKFIHKPWEAPSNILQACNIVLGHNYPKPIVDLKVSRQRAL 475 Query: 472 NQYYAAKK 479 + + K+ Sbjct: 476 DAFAVTKE 483 >gi|15888554|ref|NP_354235.1| DNA photolyase [Agrobacterium tumefaciens str. C58] gi|15156266|gb|AAK87020.1| DNA photolyase [Agrobacterium tumefaciens str. C58] Length = 479 Score = 263 bits (672), Expect = 5e-68, Method: Compositional matrix adjust. Identities = 170/490 (34%), Positives = 244/490 (49%), Gaps = 38/490 (7%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 +VW R DLR++DN AL AA + VI V+I + + Q +++ SL + Sbjct: 9 IVWFRKDLRLSDNLALLAAVEHG-GPVIPVYI---REKSAGPLGGAQEWWLHHSLAALSS 64 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130 SL + G D+ L + + +NR+Y+ + DK L+++L+ Sbjct: 65 SLEKAGGRLVLASG----DAERILRDLISETGADTVVWNRRYDPTGMATDKALKQKLRDD 120 Query: 131 -VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPV-PAIRLTGPV 188 + +SF +L P + + Y+VYTPF +AL +D P P LT P Sbjct: 121 GLTVRSFSGQLLHEPSRLQTKSGGPYRVYTPFWRAL----EGSDEPHAPADPPKSLTAPK 176 Query: 189 TPSNIPRFFDYPFQAIDP--------MFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ 240 + ++ P ++ GE AL L F + Y E RD PA Sbjct: 177 VWPKSEKLSNWKLLPTKPDWAKDFSDIWTPGETGALDKLDDFIDGALKGYEEGRDFPAKP 236 Query: 241 GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPS 300 TS LSP+L+ G +SP W+ K + S + E++WREF HL+ +P Sbjct: 237 ATSLLSPHLAAGEISPAAVWHATKGLSRHIASNDIS---RFRKEIVWREFCYHLLFHFPE 293 Query: 301 VCMGKPFIPWTEKIE---WNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMIT 357 + W + + W D +AW +G TG+PI+DA MRQL G MHNR+RMI Sbjct: 294 LGEKN----WNDSFDAFSWRDDEKSFKAWTRGMTGYPIVDAGMRQLWQHGTMHNRVRMIV 349 Query: 358 ASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKR 417 ASFL+K LL+DWR GE++F L+D D ASN WQW A +G D+ P+FRIFNP +QG++ Sbjct: 350 ASFLIKHLLIDWRKGEKWFRDTLVDADPASNAANWQWVAGSGADASPFFRIFNPILQGEK 409 Query: 418 FDPQGTFIRHWLPELNNVPTQYIH----APHSWLDKNDLSLN--YPLPIVDHKKACHHTL 471 FD G ++R ++PEL + +YIH AP L K + L YPLPIVDH KA L Sbjct: 410 FDGDGDYVRRFVPELEKLERKYIHKPFEAPKDALKKAGVELGKTYPLPIVDHGKARERAL 469 Query: 472 NQYYAAKKQS 481 Y A KK + Sbjct: 470 AAYAAVKKTT 479 >gi|315169765|gb|EFU13782.1| FAD binding domain of DNA photolyase [Enterococcus faecalis TX1342] Length = 477 Score = 263 bits (672), Expect = 5e-68, Method: Compositional matrix adjust. Identities = 177/493 (35%), Positives = 254/493 (51%), Gaps = 54/493 (10%) Query: 11 LVWLRNDLRITDNKALYAACHNSDA-KVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69 ++W R DLR+ DNKAL A NS A ++I +F P+Q+ Q SA + F +ASL ++ Sbjct: 4 VMWFRRDLRLQDNKALAHALQNSAADELILLFQMNPQQFIQE--SANHNAF-FASLASLK 60 Query: 70 KSLSQKG---IVFQYHQCSNFDDSIEWLDSYCLQQRV----TKLFYNRQYEINEVRRDKL 122 + + Q+ I+ E LD + +R +++N +RD+ Sbjct: 61 ERIDQEAHLQIMVG-----------EPLDLFSRLKRKLPDWQAIYFNEDTCGFGAKRDQQ 109 Query: 123 LEKRLQHRVICK-SFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPA 181 + + I SF D+ L I + Y+V+TP+ N + + P+P Sbjct: 110 AMRFFEENNIQSFSFQDAYLHGSEEIKKNDGSKYQVFTPYY-----NKWKEAPKETPIPV 164 Query: 182 IR-----LTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDI 236 + + P + + + + +GE+ A L F +K+ Y +RD Sbjct: 165 SYTAEKIFSACLFPEEEAAYREQIARIPLTHYSVGEETARRRLNTFIDQKLQSYENKRDF 224 Query: 237 PAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKS-GAFSWLNELIWREFYRHLM 295 P TS LS +L G LS R W +L P S ++ EL WR+FY + Sbjct: 225 PYQDQTSHLSTFLRTGELSIRTIWQ-------ELASAPSSLSKETFKKELAWRDFYNMIY 277 Query: 296 AFYP---SVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNR 352 + +P + + F I+W D + W++G TG+PIIDAAMRQLN GWMHNR Sbjct: 278 STFPQQKEEAIQEKF----RYIQWTNDPEMFAKWQKGETGYPIIDAAMRQLNQTGWMHNR 333 Query: 353 LRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPT 412 LRMITASFLVK+L +DWR GE+YF L+D D+A+N GGWQWAASTG D+VPYFRIFNP Sbjct: 334 LRMITASFLVKNLHIDWRWGEKYFQKMLIDYDVANNIGGWQWAASTGTDAVPYFRIFNPI 393 Query: 413 IQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND------LSLNYPLPIVDHKKA 466 IQ K+FD G FI+ ++PEL VP +YIH P+ + L NYP PIVD+ + Sbjct: 394 IQSKKFDNDGQFIKKYVPELKQVPQKYIHQPNLMNETLQTQYHVHLGENYPKPIVDYASS 453 Query: 467 CHHTLNQYYAAKK 479 TL Y A+K+ Sbjct: 454 KKQTLFLYEASKE 466 >gi|47528471|ref|YP_019820.1| deoxyribodipyrimidine photolyase family protein [Bacillus anthracis str. 'Ames Ancestor'] gi|47503619|gb|AAT32295.1| deoxyribodipyrimidine photolyase family protein [Bacillus anthracis str. 'Ames Ancestor'] Length = 469 Score = 263 bits (672), Expect = 5e-68, Method: Compositional matrix adjust. Identities = 161/480 (33%), Positives = 256/480 (53%), Gaps = 28/480 (5%) Query: 14 LRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQKSLS 73 + D R+ DN AL+ A + + V+ V++ + + +++ +++ V+K L Sbjct: 2 FQKDFRLYDNPALFEAAQSGE--VVPVYVHD----ETFSMGSASKWWLHHAIIDVKKQLE 55 Query: 74 QKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR-VI 132 G + S ++ + S Q +T +++N Y+ + ++ ++ ++ L+H+ +I Sbjct: 56 ALGSTLIIRKGSTQEEIL----SLVEQLGITAVYWNICYDPDRLQSNQKMKMMLEHKGMI 111 Query: 133 CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT--P 190 CK F+ +LL P I YKV+TPF A + ++ + + + PV+ Sbjct: 112 CKEFNSHLLLEPWVIKKKDNTEYKVFTPFYNAFQKQVIHKPISKVQSIKGGNSLPVSLSV 171 Query: 191 SNIPRFFDYPFQA-IDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYL 249 S + P+ + ++ ++ E+ A ++F K+ Y E RD P S L+PYL Sbjct: 172 SELHLLPTIPWTSHMESIWEPTEEGAYKTWKEFFSSKLASYSEGRDFPNQNAHSMLAPYL 231 Query: 250 SIGVLSPRQCW----NRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305 S G +S + + N+ E L K + S++ +LIWREF +L+ YP K Sbjct: 232 SFGQISVKLIYHYLINKSTESQCSLFEKQVN---SFIRQLIWREFSYYLLYHYPFTAY-K 287 Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365 P E WN + LL+ W++G TG+P IDA MR+L G+MHNR RM ASFLVK L Sbjct: 288 PLNKSFEHFPWNNEEELLRVWQKGDTGYPFIDAGMRELWQTGFMHNRTRMAVASFLVKHL 347 Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425 L+ W+ G ++FM LLD D+A+N GWQW A +G D+ PYFRIFNP QG++FD G +I Sbjct: 348 LIPWQEGAKWFMDTLLDADIANNTMGWQWVAGSGADASPYFRIFNPITQGEKFDKNGEYI 407 Query: 426 RHWLPELNNVPTQYIH----APHSWLDKNDLSLN--YPLPIVDHKKACHHTLNQYYAAKK 479 R W+PEL ++P +YIH AP L K ++ L YPLP+VDHK A L Y + K+ Sbjct: 408 RKWVPELKDMPNKYIHKPWEAPEHILQKANIQLGHTYPLPVVDHKAARERALCAYKSMKE 467 >gi|228986230|ref|ZP_04146370.1| Deoxyribodipyrimidine photolyase [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|228773492|gb|EEM21918.1| Deoxyribodipyrimidine photolyase [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] Length = 476 Score = 263 bits (671), Expect = 6e-68, Method: Compositional matrix adjust. Identities = 159/485 (32%), Positives = 259/485 (53%), Gaps = 32/485 (6%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 +V + D R+ DN AL+ A + + + V+ T I + +++ +++ V++ Sbjct: 6 IVMFQKDFRLYDNPALFEAAQSGEVLPLYVYDET------FSIGSASKWWLHHTIIDVKR 59 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130 L G + + ++ + ++ Q +T +++N Y+ + ++ ++ ++ L+ + Sbjct: 60 QLEALGSTLIIRKGNTMEEILSLIE----QLGMTAVYWNICYDPDRLQSNQKMKMMLEDK 115 Query: 131 -VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIR----LT 185 +ICK F+ +LL P I YKV+TPF A + ++ + V +I+ L Sbjct: 116 GIICKEFNSHLLLEPWIIKKKDNTEYKVFTPFYHAFQKQVISKPISK--VQSIKWGSSLP 173 Query: 186 GPVTPSNIPRFFDYPFQA-IDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244 ++ S + P+ + ++ ++ E+ A +KF K+ Y E RD P S Sbjct: 174 ASLSVSELHLLPTIPWTSHMESIWEPTEEGAYKTFKKFFSSKLVSYSEGRDFPNQNAHSM 233 Query: 245 LSPYLSIGVLSPRQCW----NRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPS 300 L+PYLS G +S + + N+ E+ L + S++ + IWREF +L+ YP Sbjct: 234 LAPYLSFGQISVKLIYHYLINKSNEKQCSLF---EQQVNSFIRQFIWREFSYYLLYHYP- 289 Query: 301 VCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASF 360 + KP E WN + LL+ W++G TG+P IDA MR+L G+MHNR RM ASF Sbjct: 290 FTVYKPLNKNFEHFPWNNEEELLRVWQKGETGYPFIDAGMRELWQTGFMHNRARMAVASF 349 Query: 361 LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDP 420 LVK LL+ W+ G ++FM LLD D+A+N GWQW A +G D+ PYFRIFNP QG++FD Sbjct: 350 LVKHLLIPWQEGAKWFMDTLLDADIANNTMGWQWVAGSGADASPYFRIFNPITQGEKFDK 409 Query: 421 QGTFIRHWLPELNNVPTQYIH----APHSWLDKNDLSLN--YPLPIVDHKKACHHTLNQY 474 G +IR W+PEL ++P +YIH AP L K ++ L YPLP+VDHK A L Y Sbjct: 410 DGEYIRKWVPELRDIPNKYIHKPWEAPEHILQKANIKLGDTYPLPVVDHKAARERALCAY 469 Query: 475 YAAKK 479 + K+ Sbjct: 470 KSMKE 474 >gi|228940236|ref|ZP_04102807.1| Deoxyribodipyrimidine photolyase [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228973152|ref|ZP_04133742.1| Deoxyribodipyrimidine photolyase [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228979734|ref|ZP_04140058.1| Deoxyribodipyrimidine photolyase [Bacillus thuringiensis Bt407] gi|228780047|gb|EEM28290.1| Deoxyribodipyrimidine photolyase [Bacillus thuringiensis Bt407] gi|228786555|gb|EEM34544.1| Deoxyribodipyrimidine photolyase [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228819362|gb|EEM65416.1| Deoxyribodipyrimidine photolyase [Bacillus thuringiensis serovar berliner ATCC 10792] gi|326940880|gb|AEA16776.1| deoxyribodipyrimidine photolyase [Bacillus thuringiensis serovar chinensis CT-43] Length = 476 Score = 263 bits (671), Expect = 6e-68, Method: Compositional matrix adjust. Identities = 165/490 (33%), Positives = 255/490 (52%), Gaps = 42/490 (8%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 +V + D R+ DN AL+ A + + V+ V+I Q I + +++ +++ V+K Sbjct: 6 IVMFQKDFRLYDNPALFEAVQSGE--VLPVYI----QEETFSIGSASKWWLHHAVIDVKK 59 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130 L G + ++ + ++ Q +T +++N Y+ + ++ ++ ++ L+ + Sbjct: 60 QLEALGSTLIIRKGRTEEEILSLIE----QLDITAVYWNICYDPDRLQSNQKMKMMLEDK 115 Query: 131 -VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189 +ICK F+ +LL P I YKV+TPF A + ++ P P R+ Sbjct: 116 GIICKEFNSHLLLEPWVIKKKDNTEYKVFTPFYNAFQKQVI-------PKPISRVQSIKW 168 Query: 190 PSNIPRFFDYPFQAIDPMFPIG----------EQNALHILRKFCKEKVYYYVEQRDIPAI 239 +++P + P P E+ A +KF K+ Y E RD P Sbjct: 169 GNSLPASLSVSELHLLPTIPWTSHMEVIWDPTEEGAYKTFKKFFSSKLVSYSEGRDFPDQ 228 Query: 240 QGTSQLSPYLSIGVLSPRQCW----NRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLM 295 S L+PYLS G +S + + N+ E L K + S++ +LIWREF +L+ Sbjct: 229 NVHSMLAPYLSFGQISVKLMFHYLINKSTERQCSLFEKQVN---SFIRQLIWREFSYYLL 285 Query: 296 AFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRM 355 YP + +P E WNK+ LL+ W++G TG+P IDA MR+L G+MHNR RM Sbjct: 286 YHYP-FTVYRPLNKSFENFPWNKEEELLRVWQKGKTGYPFIDAGMRELWQTGFMHNRARM 344 Query: 356 ITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQG 415 ASFLVK LL+ W+ G ++FM LLD D+A+N GWQW A +G D+ PYFRIFNP QG Sbjct: 345 AVASFLVKHLLIPWQEGAKWFMDTLLDADIANNTMGWQWVAGSGADASPYFRIFNPITQG 404 Query: 416 KRFDPQGTFIRHWLPELNNVPTQYIH----APHSWLDKNDLSLN--YPLPIVDHKKACHH 469 ++FD G +IR W+PEL +P +YIH AP L K+++ L YP PIVDHK A Sbjct: 405 EKFDKNGEYIRRWVPELRYIPNKYIHKPWEAPEHILQKSNIKLGDTYPYPIVDHKAARER 464 Query: 470 TLNQYYAAKK 479 L Y + K+ Sbjct: 465 ALCAYKSMKE 474 >gi|195941048|ref|ZP_03086430.1| deoxyribodipyrimidine photolyase [Escherichia coli O157:H7 str. EC4024] Length = 172 Score = 263 bits (671), Expect = 6e-68, Method: Compositional matrix adjust. Identities = 117/170 (68%), Positives = 137/170 (80%) Query: 310 WTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDW 369 WTE+++W + LL+AW+ G TGFPI+DAAMRQLN GWMHNRLRMITASFLVKDLL+DW Sbjct: 2 WTEEVQWQSNETLLKAWQHGLTGFPIVDAAMRQLNETGWMHNRLRMITASFLVKDLLIDW 61 Query: 370 RIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWL 429 R GE YF+SQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG+RFD G FIR W+ Sbjct: 62 RTGERYFISQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGQRFDADGEFIRRWV 121 Query: 430 PELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479 PEL +VP + IH P W DK ++LNYP PIVDHK+A TL Y AA+K Sbjct: 122 PELKDVPAKAIHEPWVWADKQRVTLNYPRPIVDHKQARVATLAAYEAARK 171 >gi|241764783|ref|ZP_04762791.1| Deoxyribodipyrimidine photo-lyase [Acidovorax delafieldii 2AN] gi|241365713|gb|EER60409.1| Deoxyribodipyrimidine photo-lyase [Acidovorax delafieldii 2AN] Length = 488 Score = 263 bits (671), Expect = 7e-68, Method: Compositional matrix adjust. Identities = 184/503 (36%), Positives = 263/503 (52%), Gaps = 42/503 (8%) Query: 1 MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHF 60 M++T A LVW R DLR D+ ALY A KV VF+ + R+ F Sbjct: 1 MESTYATG--LVWFRRDLRACDHAALYHALTQCR-KVHCVFVFDRAILDALPRADRRVAF 57 Query: 61 IYASLLQVQKSLSQ------KGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEI 114 I +L+++ +L G++ ++ + D++ L Q V + N E Sbjct: 58 IREALVELDAALRTLASHPAGGLIVRHALAT---DAVPELAQALQAQAV---YANHDDEP 111 Query: 115 NEVRRDKLLEKRL-QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQAD 173 + RD L+ RL Q + +F D LL +L A Y V+TP++ A ++ + Sbjct: 112 QALSRDSLVRTRLAQTGIAFHTFKDHTLLERDEVLTQAGTPYSVFTPYKNAWLRTIDAFQ 171 Query: 174 LRSLPVPAIRLTGPVTPSNIPRFFDYP------FQAID--PM-FPIGEQNALHILRKFCK 224 L+S V +R + P P P F+A P+ P G A+ + F Sbjct: 172 LQSYAV--VRHAHRLAPRPAPECLPVPALGALGFEAAQNTPLGLPTGSSGAMRLFEDFL- 228 Query: 225 EKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNE 284 ++++ Y + RD PAI+G S LS +L G +SPR L L GA +WLNE Sbjct: 229 QRIHRYADTRDYPAIKGPSYLSVHLRFGTISPRL----LARSAHALAQGGNPGATTWLNE 284 Query: 285 LIWREFYRHLMAFYPSVCMGKPFIPWTEKIEW---NKDSHLLQAWKQGYTGFPIIDAAMR 341 LIWR+FY ++A +P V + + F P + I+W ++ L AW +G TG+P++DAAM Sbjct: 285 LIWRDFYCQILAHHPHV-VERSFKPAYDAIQWETGDEAQALFSAWCEGRTGYPLVDAAMA 343 Query: 342 QLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGND 401 QLN G+MHNRLRM+ ASFLVK L +DWR GE YF + L D DLA+NNGGWQWA+S+G D Sbjct: 344 QLNQTGYMHNRLRMVAASFLVKHLGIDWRWGEHYFATHLNDFDLAANNGGWQWASSSGCD 403 Query: 402 SVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYI----HAPHSWLDKNDLSL--N 455 + PYFRIFNP Q ++FD +G FIR +LP+L +P + A L + + L + Sbjct: 404 AQPYFRIFNPVSQSEKFDAEGRFIRRYLPQLAALPLAALHAPWRARPLELQEAGVVLGHH 463 Query: 456 YPLPIVDHKKACHHTLNQYYAAK 478 YP PIVDH A TL +Y K Sbjct: 464 YPQPIVDHDSARQRTLQRYAVVK 486 >gi|313126193|ref|YP_004036463.1| deoxyribodipyrimidine photo-lyase type i [Halogeometricum borinquense DSM 11551] gi|312292558|gb|ADQ67018.1| deoxyribodipyrimidine photo-lyase type I [Halogeometricum borinquense DSM 11551] Length = 469 Score = 262 bits (670), Expect = 7e-68, Method: Compositional matrix adjust. Identities = 160/475 (33%), Positives = 246/475 (51%), Gaps = 17/475 (3%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 +HL W R DLR++DN L A D V+ VF+ + G A + F+ +L ++ Sbjct: 1 MHLHWHRRDLRVSDNHGLVTAADAGD--VVPVFVFDDDVLAHAG--AARVRFMLDALARL 56 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128 +++ ++ + D E L + + +N+ Y RD+ + + L Sbjct: 57 RETYRERDSDLVVVRG----DPTEELPRLAAEYDADGVVWNKDYSRLARTRDEAVRRALD 112 Query: 129 HRVIC-KSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187 + + D++ PGSI +A Y VYT F K +N +AD P Sbjct: 113 EAGVAHDAVHDAIHHEPGSITTNAGDPYSVYTYFWKKW-RNRNKAD--PFSPPEADSLAD 169 Query: 188 VTPSNIPRFFDYPFQAIDPMF-PIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246 V+ +++P + F D G + A L FC++ +Y Y RD P TS+LS Sbjct: 170 VSGADLPTIEELGFSDPDATIQEAGTEAARERLAAFCEDAIYRYATDRDYPERNATSRLS 229 Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFS-WLNELIWREFYRHLMAFYPSVCMGK 305 L G + R+ + +E + ++ + + ++L WREFY H++ F P V + Sbjct: 230 ADLKWGTIGIREVYAATEEAAENADSDDEAKSVEEFQSQLAWREFYTHVLYFNPDVVT-Q 288 Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365 + + I W +D L AWK+G TG+PI+DA MRQL +MHNR+RMI ASFL KDL Sbjct: 289 NYKEYENDIAWREDEEALTAWKEGRTGYPIVDAGMRQLREEAYMHNRMRMIVASFLTKDL 348 Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425 L+DWR G +F + L D D A++NGGWQWAASTG D+ PYFRIFNP QG+R+DP T+I Sbjct: 349 LIDWREGYAHFRAYLADHDTANDNGGWQWAASTGTDAQPYFRIFNPMTQGERYDPDATYI 408 Query: 426 RHWLPELNNVPTQYIHA-PH-SWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478 + ++PEL + IH P+ S ++ ++ YP PIV+H K ++ + AA+ Sbjct: 409 QQYVPELRDATADEIHDWPNLSPTERETVAPEYPDPIVEHSKRRDQAISMFEAAR 463 >gi|256965091|ref|ZP_05569262.1| deoxyribodipyrimidine photolyase [Enterococcus faecalis HIP11704] gi|307273190|ref|ZP_07554436.1| FAD binding domain of DNA photolyase [Enterococcus faecalis TX0855] gi|256955587|gb|EEU72219.1| deoxyribodipyrimidine photolyase [Enterococcus faecalis HIP11704] gi|306510175|gb|EFM79199.1| FAD binding domain of DNA photolyase [Enterococcus faecalis TX0855] Length = 477 Score = 262 bits (670), Expect = 9e-68, Method: Compositional matrix adjust. Identities = 175/492 (35%), Positives = 251/492 (51%), Gaps = 52/492 (10%) Query: 11 LVWLRNDLRITDNKALYAACHNSDA-KVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69 ++W R DLR+ DNKAL A NS A ++I +F P+Q+ Q SA + F +ASL ++ Sbjct: 4 VMWFRRDLRLQDNKALAHALQNSAADELILLFQMNPQQFIQE--SANHNAF-FASLASLK 60 Query: 70 KSLSQKG---IVFQYHQCSNFDDSIEWLDSYCLQQRV----TKLFYNRQYEINEVRRDKL 122 + + Q+ I+ E LD + +R +++N +RD+ Sbjct: 61 ERIDQEAHLQIMVG-----------EPLDLFSRLKRKLPDWQAIYFNEDTCGFGAKRDQQ 109 Query: 123 LEKRLQHRVICK-SFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPA 181 + + I SF D+ L I + Y+V+TP+ N + + P+P Sbjct: 110 AMRFFEENNIQSFSFQDAYLHGSEEIKKNDGSKYQVFTPYY-----NKWKEAPKETPIPV 164 Query: 182 IR-----LTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDI 236 + + P + + + + +GE+ A L F +K+ Y +RD Sbjct: 165 SYTAEKIFSACLFPEEEAAYREQIARIPLTHYSVGEKTARRCLNTFIDQKLQSYENKRDF 224 Query: 237 PAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMA 296 P TS LS +L G LS R W L + ++ EL WR+FY + + Sbjct: 225 PYQDQTSHLSTFLRTGELSIRTIWQELAS------VPSSLSKETFKKELAWRDFYNMIYS 278 Query: 297 FYP---SVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRL 353 +P + + F I+W D + W++G TG+PIIDAAMRQLN GWMHNRL Sbjct: 279 AFPQQKEEAIQEKF----RYIQWTNDPEMFAKWQKGETGYPIIDAAMRQLNQTGWMHNRL 334 Query: 354 RMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTI 413 RMITASFLVK+L +DWR GE+YF L+D D A+N GGWQWAASTG D+VPYFRIFNP I Sbjct: 335 RMITASFLVKNLHIDWRWGEKYFQKMLIDYDAANNIGGWQWAASTGTDAVPYFRIFNPII 394 Query: 414 QGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND------LSLNYPLPIVDHKKAC 467 Q K+FD G FI+ ++PEL VP +YIH P+ + L NYP PIVD+ + Sbjct: 395 QSKKFDNDGQFIKKYVPELKQVPQKYIHQPNLMNEALQTQYHVHLGENYPKPIVDYASSK 454 Query: 468 HHTLNQYYAAKK 479 TL Y A+K+ Sbjct: 455 KQTLFLYEASKE 466 >gi|228934418|ref|ZP_04097254.1| Deoxyribodipyrimidine photolyase [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228825271|gb|EEM71067.1| Deoxyribodipyrimidine photolyase [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] Length = 476 Score = 262 bits (669), Expect = 1e-67, Method: Compositional matrix adjust. Identities = 161/483 (33%), Positives = 257/483 (53%), Gaps = 28/483 (5%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 +V + D R+ DN AL+ A + + V+ V++ + + +++ +++ V+K Sbjct: 6 IVMFQKDFRLYDNPALFEAAQSGE--VVPVYVHD----ETFSMGSASKWWLHHAIIDVKK 59 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130 L G + S ++ + S Q +T +++N Y+ + ++ ++ ++ L+ + Sbjct: 60 QLEALGSTLIIRKGSTEEEIL----SLVEQLGITAVYWNICYDPDRLQFNQKMKMMLEDK 115 Query: 131 -VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189 +ICK F+ +LL P I YKV+TPF A + ++ + + + PV+ Sbjct: 116 GMICKEFNSHLLLEPWVIKKKDNTEYKVFTPFYNAFQKQVIHKPISKVQSIKGGNSLPVS 175 Query: 190 --PSNIPRFFDYPFQA-IDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246 S + P+ + ++ ++ E+ A +KF K+ Y E RD P S L+ Sbjct: 176 LSVSELHLLPTIPWTSHMESIWEPTEEGAYKTCKKFFSSKLASYSEGRDFPNQNAHSMLA 235 Query: 247 PYLSIGVLSPRQCW----NRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVC 302 PYLS G +S + + N+ E L K + S++ +LIWREF +L+ YP Sbjct: 236 PYLSFGQISVKLIYHYLINKSTESQCSLFEKQVN---SFIRQLIWREFSYYLLYHYPFTA 292 Query: 303 MGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLV 362 KP E WN + LL+ W++G TG+P IDA MR+L G+MHNR RM ASFL+ Sbjct: 293 Y-KPLNKSFEHFPWNNEEELLRVWQKGETGYPFIDAGMRELWQTGFMHNRTRMAVASFLI 351 Query: 363 KDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQG 422 K LL+ W+ G ++FM LLD D+A+N GWQW A +G D+ PYFRIFNP QG++FD G Sbjct: 352 KHLLIPWQEGAKWFMDTLLDADIANNTMGWQWVAGSGADASPYFRIFNPITQGEKFDKNG 411 Query: 423 TFIRHWLPELNNVPTQYIH----APHSWLDKNDLSLN--YPLPIVDHKKACHHTLNQYYA 476 +IR W+PEL ++P +YIH AP L K ++ L YPLP+VDHK A L Y + Sbjct: 412 EYIRKWVPELKDMPNKYIHKPWEAPEHILQKANIQLGHTYPLPVVDHKAARERALCAYKS 471 Query: 477 AKK 479 K+ Sbjct: 472 MKE 474 >gi|257086709|ref|ZP_05581070.1| deoxyribodipyrimidine photolyase [Enterococcus faecalis D6] gi|256994739|gb|EEU82041.1| deoxyribodipyrimidine photolyase [Enterococcus faecalis D6] gi|315027232|gb|EFT39164.1| FAD binding domain of DNA photolyase [Enterococcus faecalis TX2137] Length = 477 Score = 262 bits (669), Expect = 1e-67, Method: Compositional matrix adjust. Identities = 177/490 (36%), Positives = 252/490 (51%), Gaps = 48/490 (9%) Query: 11 LVWLRNDLRITDNKALYAACHNSDA-KVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69 ++W R DLR+ DNKAL A NS A ++I +F P+Q+ Q SA + F +ASL + Sbjct: 4 VMWFRRDLRLQDNKALAHALQNSAADELILLFQMNPQQFIQE--SANHNAF-FASLASFK 60 Query: 70 KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRV----TKLFYNRQYEINEVRRDKLLEK 125 + + Q+ + Q E LD + +R +++N +RD+ + Sbjct: 61 ERIDQEAHL----QIM----VGEPLDLFSRLKRKLPDWQAIYFNEDTCGFGAKRDQQAMR 112 Query: 126 RLQHRVICK-SFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIR- 183 + I SF D+ L I + Y+V+TP+ N + + P+P Sbjct: 113 FFEENNIQSFSFQDAYLHGSEEIKKNDGSKYQVFTPYY-----NKWKEAPKETPIPVSYT 167 Query: 184 ----LTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAI 239 + + P + + + + +GE+ A L F +K+ Y +RD P Sbjct: 168 AEKIFSACLFPEEEAAYREQIARIPLTHYSVGEETARRRLNTFINQKLRSYENKRDFPYQ 227 Query: 240 QGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKS-GAFSWLNELIWREFYRHLMAFY 298 TS LS +L G LS R W +L P S ++ EL WR+FY + + + Sbjct: 228 DQTSHLSTFLRTGELSIRTIWQ-------ELASAPSSLSKETFKKELAWRDFYNMIYSTF 280 Query: 299 P---SVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRM 355 P + + F I+W D + W++G TG+PIIDAAMRQLN GWMHNRLRM Sbjct: 281 PQQKEEAIQEKF----RYIQWTNDPEMFAKWQKGETGYPIIDAAMRQLNQTGWMHNRLRM 336 Query: 356 ITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQG 415 ITASFLVK+L +DWR GE+YF L+D D A+N GGWQWAASTG D+VPYFRIFNP IQ Sbjct: 337 ITASFLVKNLHIDWRWGEKYFQKMLIDYDAANNIGGWQWAASTGTDAVPYFRIFNPIIQS 396 Query: 416 KRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND------LSLNYPLPIVDHKKACHH 469 K+FD G FI+ ++PEL VP +YIH P+ + L NYP PIVD+ + Sbjct: 397 KKFDNDGQFIKKYVPELKQVPQKYIHQPNLMNEALQTQYHVHLGENYPKPIVDYASSKKQ 456 Query: 470 TLNQYYAAKK 479 TL Y A+K+ Sbjct: 457 TLFLYEASKE 466 >gi|315147299|gb|EFT91315.1| FAD binding domain of DNA photolyase [Enterococcus faecalis TX4244] Length = 477 Score = 262 bits (669), Expect = 1e-67, Method: Compositional matrix adjust. Identities = 177/493 (35%), Positives = 252/493 (51%), Gaps = 54/493 (10%) Query: 11 LVWLRNDLRITDNKALYAACHNSDA-KVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69 ++W R DLR+ DNKAL A NS A ++I +F P+Q+ Q SA + F +ASL + Sbjct: 4 VMWFRRDLRLQDNKALAHALQNSAADELILLFQMNPQQFIQE--SANHNAF-FASLASFK 60 Query: 70 KSLSQKG---IVFQYHQCSNFDDSIEWLDSYCLQQRV----TKLFYNRQYEINEVRRDKL 122 + + Q+ I+ E LD + +R +++N +RD+ Sbjct: 61 ERIDQEAHLQIMVG-----------EPLDLFSRLKRKLPDWQAIYFNEDTCGFGAKRDQQ 109 Query: 123 LEKRLQHRVICK-SFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPA 181 + + I SF D+ L I + Y+V+TP+ N + + P+P Sbjct: 110 AMRFFEENNIQSFSFQDAYLHGSEEIKKNDGSKYQVFTPYY-----NKWKEAPKETPIPV 164 Query: 182 IR-----LTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDI 236 + + P + + + + +GE+ A L F +K+ Y +RD Sbjct: 165 SYTAEKIFSACLFPEEEAAYGEQIARIPLTHYSVGEKTARRCLNTFIDQKLQSYENKRDF 224 Query: 237 PAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKS-GAFSWLNELIWREFYRHLM 295 P TS LS +L G LS R W +L P S ++ EL WR+FY + Sbjct: 225 PYQDQTSHLSTFLRTGELSIRTIWQ-------ELASAPSSLSKETFKKELAWRDFYNMIY 277 Query: 296 AFYP---SVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNR 352 + +P + + F I+W D + W++G TG+PIIDAAMRQLN GWMHNR Sbjct: 278 STFPQQKEEAIQEKF----RYIQWTNDPEMFAKWQKGETGYPIIDAAMRQLNQTGWMHNR 333 Query: 353 LRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPT 412 LRMITASFLVK+L +DWR GE+YF L+D D A+N GGWQWAASTG D+VPYFRIFNP Sbjct: 334 LRMITASFLVKNLHIDWRWGEKYFQKMLIDYDAANNIGGWQWAASTGTDAVPYFRIFNPI 393 Query: 413 IQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND------LSLNYPLPIVDHKKA 466 IQ K+FD G FI+ ++PEL VP +YIH P+ + L NYP PIVD+ + Sbjct: 394 IQSKKFDNDGQFIKKYVPELKQVPQKYIHQPNLMNEALQTQYHVHLGENYPKPIVDYASS 453 Query: 467 CHHTLNQYYAAKK 479 TL Y A+K+ Sbjct: 454 KKQTLFLYEASKE 466 >gi|228915743|ref|ZP_04079325.1| Deoxyribodipyrimidine photolyase [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228843918|gb|EEM88985.1| Deoxyribodipyrimidine photolyase [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] Length = 476 Score = 261 bits (668), Expect = 1e-67, Method: Compositional matrix adjust. Identities = 160/485 (32%), Positives = 257/485 (52%), Gaps = 32/485 (6%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 +V + D R+ DN AL+ A + + + V+ T I + +++ +++ V++ Sbjct: 6 IVMFQKDFRLYDNPALFEAAQSGEVLPLYVYDET------FSIGSASKWWLHHTIIDVKR 59 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130 L G + +++E + S Q +T +++N Y+ ++ ++ ++ L+ + Sbjct: 60 QLETLGSTLIIRK----GNTLEEILSLIKQLGITAVYWNICYDPERLQFNQKMKMMLEDK 115 Query: 131 -VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIR----LT 185 + CK F+ +LL P I YKV+TPF A + ++ + V +I+ L Sbjct: 116 GITCKEFNSHLLLEPWIIKKKDNTEYKVFTPFYNAFQKQVISKPISK--VQSIKWGSSLP 173 Query: 186 GPVTPSNIPRFFDYPFQA-IDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244 ++ S + P+ + ++ ++ E+ A +KF K+ Y E RD P S Sbjct: 174 ASLSVSELHLLPTIPWTSHMESIWEPTEEGAYKTFKKFFSSKLVSYSEGRDFPNQNAHSM 233 Query: 245 LSPYLSIGVLSPRQCW----NRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPS 300 L+PYLS G +S + + N+ E+ L + S++ + IWREF +L+ YP Sbjct: 234 LAPYLSFGQISVKLIYHYLINKSNEKQCSLF---EQQVNSFIRQFIWREFSYYLLYHYP- 289 Query: 301 VCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASF 360 + KP E WN + LL+ W++G TG+P IDA MR+L G+MHNR RM ASF Sbjct: 290 FTVNKPLNKNFEHFPWNNEEELLRVWQKGETGYPFIDAGMRELWQTGFMHNRARMAVASF 349 Query: 361 LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDP 420 LVK LL+ W+ G ++FM LLD D+A+N GWQW A +G D+ PYFRIFNP QG++FD Sbjct: 350 LVKHLLIPWQEGAKWFMDTLLDADIANNTMGWQWVAGSGADASPYFRIFNPITQGEKFDK 409 Query: 421 QGTFIRHWLPELNNVPTQYIH----APHSWLDKNDLSLN--YPLPIVDHKKACHHTLNQY 474 G +IR W+PEL ++P +YIH AP L K ++ L YPLP+VDHK A L Y Sbjct: 410 DGEYIRKWVPELRDMPNKYIHKPWEAPEHILQKANIKLGDTYPLPVVDHKAARERALCAY 469 Query: 475 YAAKK 479 + K+ Sbjct: 470 KSMKE 474 >gi|257085148|ref|ZP_05579509.1| deoxyribodipyrimidine photolyase [Enterococcus faecalis Fly1] gi|256993178|gb|EEU80480.1| deoxyribodipyrimidine photolyase [Enterococcus faecalis Fly1] Length = 477 Score = 261 bits (668), Expect = 1e-67, Method: Compositional matrix adjust. Identities = 177/490 (36%), Positives = 252/490 (51%), Gaps = 48/490 (9%) Query: 11 LVWLRNDLRITDNKALYAACHNSDA-KVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69 ++W R DLR+ DNKAL A NS A ++I +F P+Q+ Q SA + F +ASL + Sbjct: 4 VMWFRRDLRLQDNKALAHALQNSAADELILLFQMNPQQFIQE--SANHNAF-FASLASFK 60 Query: 70 KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRV----TKLFYNRQYEINEVRRDKLLEK 125 + + Q+ + Q E LD + +R +++N +RD+ + Sbjct: 61 ERIDQEAHL----QIM----VGEPLDLFSRLKRKLPDWQAIYFNEDTCGFGAKRDQQAMR 112 Query: 126 RLQHRVICK-SFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIR- 183 + I SF D+ L I + Y+V+TP+ N + + P+P Sbjct: 113 FFEENNIQSFSFQDAYLHGSEEIKKNDGSKYQVFTPYY-----NKWKEAPKETPIPVSYT 167 Query: 184 ----LTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAI 239 + + P + + + + +GE+ A L F +K+ Y +RD P Sbjct: 168 AEKIFSACLFPEEEAAYGEQIARIPLTHYSVGEETARRRLNTFIDQKLQSYENKRDFPYQ 227 Query: 240 QGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKS-GAFSWLNELIWREFYRHLMAFY 298 TS LS +L G LS R W +L P S ++ EL WR+FY + + + Sbjct: 228 DQTSHLSTFLRTGELSIRTIWQ-------ELASAPSSLSKETFKKELAWRDFYNMIYSAF 280 Query: 299 P---SVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRM 355 P + + F I+W D + W++G TG+PIIDAAMRQLN GWMHNRLRM Sbjct: 281 PQQKEEAIQEKF----RYIQWTNDPEMFAKWQKGETGYPIIDAAMRQLNQTGWMHNRLRM 336 Query: 356 ITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQG 415 ITASFLVK+L +DWR GE+YF L+D D A+N GGWQWAASTG D+VPYFRIFNP IQ Sbjct: 337 ITASFLVKNLHIDWRWGEKYFQKMLIDYDAANNIGGWQWAASTGTDAVPYFRIFNPIIQS 396 Query: 416 KRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND------LSLNYPLPIVDHKKACHH 469 K+FD G FI+ ++PEL VP +YIH P+ + L NYP PIVD+ + Sbjct: 397 KKFDNDGQFIKKYVPELKQVPQKYIHQPNLMNEALQTQYHVHLGENYPKPIVDYASSKKQ 456 Query: 470 TLNQYYAAKK 479 TL Y A+K+ Sbjct: 457 TLFLYEASKE 466 >gi|118363134|ref|XP_001014668.1| FAD binding domain of DNA photolyase family protein [Tetrahymena thermophila] gi|89296559|gb|EAR94547.1| FAD binding domain of DNA photolyase family protein [Tetrahymena thermophila SB210] Length = 486 Score = 261 bits (668), Expect = 1e-67, Method: Compositional matrix adjust. Identities = 164/487 (33%), Positives = 249/487 (51%), Gaps = 66/487 (13%) Query: 3 ATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQ-HGISARQSHFI 61 A V + W R DLR+ DN ALY A S +V+ +FI E + + FI Sbjct: 51 AKQKRKVSIFWFRRDLRLNDNTALYNALK-SQNEVVPLFIFDTEILDKLEDKKDARVEFI 109 Query: 62 YASLLQVQKSLSQKG--IVFQYHQCSN-FDDSIEWLDSYCLQQRVTKLFYNRQYEINEVR 118 + ++++Q+ L Q G ++ ++ N F + + D + ++ NR YE + + Sbjct: 110 HLYIMKIQEQLKQVGSTLIVKHGTVDNAFKELVSEFD-------IQSVYVNRDYESSAKQ 162 Query: 119 RDKLLEKRLQHRVICKSFD--DSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRS 176 RD+ ++K ++ + +D D V+ S N YKV+TP+ K + L D Sbjct: 163 RDERIKKYVKQSANAEFYDFKDQVIFEASST-NKDGSPYKVFTPYSKKWLSILTSEDYSC 221 Query: 177 LPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNA------LHILRKFCKEKVYYY 230 P ++ + +F+ P + + + IG + A + + K K Y Sbjct: 222 RPSESL----------MEKFWKSPERKVMSLEEIGFEKAGIPFPSVELNEKIVKN----Y 267 Query: 231 VEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREF 290 + RD P+I+GT+++S +L G +S R DL+ + K ++LNELIWR+F Sbjct: 268 DKTRDTPSIEGTTRMSVHLRFGTVSIR-----------DLVRRSKGLNATYLNELIWRDF 316 Query: 291 YRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMH 350 Y ++ +P V F P +K+ W + AW +G TG+ ++DA MRQLN G+MH Sbjct: 317 YMMILDQFPHV-ENNNFKPAYDKLVWRNNVDEFMAWCEGKTGYHLVDAGMRQLNQTGYMH 375 Query: 351 NRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFN 410 NR+RM+ ASFL K LL+DW+ GE YF S+LLD DL++NNGGWQWAA TG D+ PYFRIFN Sbjct: 376 NRVRMVVASFLTKHLLIDWKWGERYFASKLLDYDLSANNGGWQWAAGTGTDAQPYFRIFN 435 Query: 411 PTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHT 470 P Q K+FDP T+I+ W+ +LN + YP PIVDHK A Sbjct: 436 PDSQQKKFDPNYTYIKTWIKDLN-------------------TKTYPKPIVDHKLARERC 476 Query: 471 LNQYYAA 477 L + A Sbjct: 477 LQAFKKA 483 >gi|257089919|ref|ZP_05584280.1| deoxyribodipyrimidine photolyase [Enterococcus faecalis CH188] gi|256998731|gb|EEU85251.1| deoxyribodipyrimidine photolyase [Enterococcus faecalis CH188] Length = 477 Score = 261 bits (668), Expect = 1e-67, Method: Compositional matrix adjust. Identities = 177/493 (35%), Positives = 251/493 (50%), Gaps = 54/493 (10%) Query: 11 LVWLRNDLRITDNKALYAACHNSDA-KVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69 ++W R DLR+ DNKAL A NS A ++I +F P+Q+ Q SA + F +ASL + Sbjct: 4 VMWFRRDLRLQDNKALAHALQNSAADELILLFQMNPQQFIQE--SANHNAF-FASLASFK 60 Query: 70 KSLSQKG---IVFQYHQCSNFDDSIEWLDSYCLQQRV----TKLFYNRQYEINEVRRDKL 122 + + Q+ I+ E LD + +R +++N +RD+ Sbjct: 61 ERIDQEAHLQIMVG-----------EPLDLFSRLKRKLPDWQAIYFNEDTCGFGAKRDQQ 109 Query: 123 LEKRLQHRVICK-SFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPA 181 + + I SF D+ L I + Y+V+TP+ N + + P+P Sbjct: 110 AMRFFEENNIQSFSFQDAYLHGSEEIKKNDGSKYQVFTPYY-----NKWKEAPKETPIPV 164 Query: 182 IRLTGPVT-----PSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDI 236 + P + + + + +GE+ A L F +K+ Y +RD Sbjct: 165 SYTAEKIFSTCLFPEEEAAYREQIARIPLKHYSVGEKTARRCLNTFIDQKLRSYENKRDF 224 Query: 237 PAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKS-GAFSWLNELIWREFYRHLM 295 P TS LS +L G LS R W +L P S ++ EL WR+FY + Sbjct: 225 PYQDQTSHLSTFLRTGELSIRTIWQ-------ELASMPSSLSKETFKKELAWRDFYNMIY 277 Query: 296 AFYP---SVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNR 352 + +P + + F I+W D + W++G TG+PIIDAAMRQLN GWMHNR Sbjct: 278 STFPQQKEEAIQEKF----RYIQWTNDPEMFAKWQKGETGYPIIDAAMRQLNQTGWMHNR 333 Query: 353 LRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPT 412 LRMITASFLVK+L +DWR GE+YF L+D D A+N GGWQWAASTG D+VPYFRIFNP Sbjct: 334 LRMITASFLVKNLHIDWRGGEKYFQKMLIDYDAANNIGGWQWAASTGTDAVPYFRIFNPI 393 Query: 413 IQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND------LSLNYPLPIVDHKKA 466 IQ K+FD G FI+ ++PEL VP +YIH P+ + L NYP PIVD+ + Sbjct: 394 IQSKKFDNDGQFIKKYVPELKQVPQKYIHQPNIMNEALQTQYHVHLGENYPKPIVDYASS 453 Query: 467 CHHTLNQYYAAKK 479 TL Y A+K+ Sbjct: 454 KKQTLFLYEASKE 466 >gi|29376159|ref|NP_815313.1| deoxyribodipyrimidine photolyase [Enterococcus faecalis V583] gi|227518787|ref|ZP_03948836.1| deoxyribodipyrimidine photolyase [Enterococcus faecalis TX0104] gi|29343622|gb|AAO81383.1| deoxyribodipyrimidine photolyase [Enterococcus faecalis V583] gi|227073782|gb|EEI11745.1| deoxyribodipyrimidine photolyase [Enterococcus faecalis TX0104] gi|315575832|gb|EFU88023.1| FAD binding domain of DNA photolyase [Enterococcus faecalis TX0309B] gi|315580484|gb|EFU92675.1| FAD binding domain of DNA photolyase [Enterococcus faecalis TX0309A] Length = 477 Score = 261 bits (668), Expect = 1e-67, Method: Compositional matrix adjust. Identities = 175/489 (35%), Positives = 250/489 (51%), Gaps = 46/489 (9%) Query: 11 LVWLRNDLRITDNKALYAACHNSDA-KVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69 ++W R DLR+ DNKAL A NS A ++I +F P+Q+ Q SA + F +ASL + Sbjct: 4 VIWFRRDLRLQDNKALAHALQNSAADELILLFQMNPQQFIQE--SANHNAF-FASLASFK 60 Query: 70 KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRV----TKLFYNRQYEINEVRRDKLLEK 125 + + Q+ + Q E LD + +R +++N +RD+ + Sbjct: 61 ERIDQEAHL----QIM----VGEPLDLFSRLKRKLPDWQAIYFNEDTCGFGAKRDQQAMR 112 Query: 126 RLQHRVICK-SFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIR- 183 + I SF D+ L I + Y+V+TP+ N + + P+P Sbjct: 113 FFEENNIQSFSFQDAYLHGSEEIKKNDGSKYQVFTPYY-----NKWKEAPKETPIPVSYT 167 Query: 184 ----LTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAI 239 + + P + + + + +GE+ A L F +K+ Y +RD P Sbjct: 168 AEKIFSACLFPEEEAAYREQIARIPLTHYSVGEETARRRLNTFIDQKLQSYENKRDFPYQ 227 Query: 240 QGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYP 299 TS LS +L G LS R W L + ++ EL WR+FY + + +P Sbjct: 228 DQTSHLSTFLRTGELSIRTIWQELAS------VPSSLSKETFKKELAWRDFYNMIYSAFP 281 Query: 300 ---SVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMI 356 + + F I+W D + W++G TG+PIIDAAMRQLN GWMHNRLRMI Sbjct: 282 QQKEEAIQEKF----RYIQWTNDPEMFVKWQKGETGYPIIDAAMRQLNQTGWMHNRLRMI 337 Query: 357 TASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGK 416 TASFLVK+L +DWR GE+YF L+D D A+N GGWQWAASTG D+VPYFRIFNP IQ K Sbjct: 338 TASFLVKNLHIDWRWGEKYFQKMLIDYDAANNIGGWQWAASTGTDAVPYFRIFNPIIQSK 397 Query: 417 RFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND------LSLNYPLPIVDHKKACHHT 470 +FD G FI+ ++PEL VP +YIH P+ + L NYP PIVD+ + T Sbjct: 398 KFDNDGQFIKKYVPELKQVPQKYIHQPNLMNEALQTQYHVHLGENYPKPIVDYASSKKQT 457 Query: 471 LNQYYAAKK 479 L Y A+K+ Sbjct: 458 LFLYEASKE 466 >gi|256959014|ref|ZP_05563185.1| deoxyribodipyrimidine photolyase [Enterococcus faecalis DS5] gi|257079045|ref|ZP_05573406.1| deoxyribodipyrimidine photolyase [Enterococcus faecalis JH1] gi|294781685|ref|ZP_06747020.1| FAD binding domain of DNA photolyase [Enterococcus faecalis PC1.1] gi|307270984|ref|ZP_07552267.1| FAD binding domain of DNA photolyase [Enterococcus faecalis TX4248] gi|307289140|ref|ZP_07569096.1| FAD binding domain of DNA photolyase [Enterococcus faecalis TX0109] gi|256949510|gb|EEU66142.1| deoxyribodipyrimidine photolyase [Enterococcus faecalis DS5] gi|256987075|gb|EEU74377.1| deoxyribodipyrimidine photolyase [Enterococcus faecalis JH1] gi|294451237|gb|EFG19704.1| FAD binding domain of DNA photolyase [Enterococcus faecalis PC1.1] gi|306499849|gb|EFM69210.1| FAD binding domain of DNA photolyase [Enterococcus faecalis TX0109] gi|306512482|gb|EFM81131.1| FAD binding domain of DNA photolyase [Enterococcus faecalis TX4248] gi|315037012|gb|EFT48944.1| FAD binding domain of DNA photolyase [Enterococcus faecalis TX0027] gi|315164049|gb|EFU08066.1| FAD binding domain of DNA photolyase [Enterococcus faecalis TX1302] gi|329571665|gb|EGG53346.1| putative deoxyribodipyrimidine photo-lyase [Enterococcus faecalis TX1467] Length = 477 Score = 261 bits (668), Expect = 1e-67, Method: Compositional matrix adjust. Identities = 175/492 (35%), Positives = 251/492 (51%), Gaps = 52/492 (10%) Query: 11 LVWLRNDLRITDNKALYAACHNSDA-KVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69 ++W R DLR+ DNKAL A NS A ++I +F P+Q+ Q SA + F +ASL ++ Sbjct: 4 VMWFRRDLRLQDNKALAHALQNSAADELILLFQMNPQQFIQE--SANHNAF-FASLASLK 60 Query: 70 KSLSQKG---IVFQYHQCSNFDDSIEWLDSYCLQQRV----TKLFYNRQYEINEVRRDKL 122 + + Q+ I+ E LD + +R +++N +RD+ Sbjct: 61 ERIDQEAHLQIMVG-----------EPLDLFSRLKRKLPDWQAIYFNEDTCGFGAKRDQQ 109 Query: 123 LEKRLQHRVICK-SFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPA 181 + + I SF D+ L I + Y+V+TP+ N + + P+P Sbjct: 110 AMRFFEENNIQSFSFQDAYLHGSEEIKKNDGSKYQVFTPYY-----NKWKEAPKETPIPV 164 Query: 182 IR-----LTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDI 236 + + P + + + + +GE+ A L F +K+ Y +RD Sbjct: 165 SYTAEKIFSACLFPEEEAAYREQIARIPLTHYSVGEKTARRCLNTFIDQKLQSYENKRDF 224 Query: 237 PAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMA 296 P TS LS +L G LS R W L + ++ EL WR+FY + + Sbjct: 225 PYQDQTSHLSTFLRTGELSIRTIWQELAS------VPSSLSKETFKKELAWRDFYNMIYS 278 Query: 297 FYP---SVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRL 353 +P + + F I+W D + W++G TG+PIIDAAMRQLN GWMHNRL Sbjct: 279 AFPQQKEEAIQEKF----RYIQWTNDPEMFVKWQKGETGYPIIDAAMRQLNQTGWMHNRL 334 Query: 354 RMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTI 413 RMITASFLVK+L +DWR GE+YF L+D D A+N GGWQWAASTG D+VPYFRIFNP I Sbjct: 335 RMITASFLVKNLHIDWRWGEKYFQKMLIDYDAANNIGGWQWAASTGTDAVPYFRIFNPII 394 Query: 414 QGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND------LSLNYPLPIVDHKKAC 467 Q K+FD G FI+ ++PEL VP +YIH P+ + L NYP PIVD+ + Sbjct: 395 QSKKFDNDGQFIKKYVPELKQVPQKYIHQPNLMNEALQTQYHVHLGENYPKPIVDYASSK 454 Query: 468 HHTLNQYYAAKK 479 TL Y A+K+ Sbjct: 455 KQTLFLYEASKE 466 >gi|229549977|ref|ZP_04438702.1| deoxyribodipyrimidine photolyase [Enterococcus faecalis ATCC 29200] gi|312951532|ref|ZP_07770428.1| FAD binding domain of DNA photolyase [Enterococcus faecalis TX0102] gi|229304890|gb|EEN70886.1| deoxyribodipyrimidine photolyase [Enterococcus faecalis ATCC 29200] gi|310630498|gb|EFQ13781.1| FAD binding domain of DNA photolyase [Enterococcus faecalis TX0102] gi|315152445|gb|EFT96461.1| FAD binding domain of DNA photolyase [Enterococcus faecalis TX0031] gi|315158111|gb|EFU02128.1| FAD binding domain of DNA photolyase [Enterococcus faecalis TX0312] gi|327535168|gb|AEA94002.1| deoxyribodipyrimidine photolyase [Enterococcus faecalis OG1RF] Length = 477 Score = 261 bits (668), Expect = 2e-67, Method: Compositional matrix adjust. Identities = 177/490 (36%), Positives = 252/490 (51%), Gaps = 48/490 (9%) Query: 11 LVWLRNDLRITDNKALYAACHNSDA-KVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69 ++W R DLR+ DNKAL A NS A ++I +F P+Q+ Q SA + F +ASL + Sbjct: 4 VMWFRRDLRLQDNKALAHALQNSAADELILLFQMNPQQFIQE--SANHNAF-FASLASFK 60 Query: 70 KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRV----TKLFYNRQYEINEVRRDKLLEK 125 + + Q+ + Q E LD + +R +++N +RD+ + Sbjct: 61 ERIDQEAHL----QIM----VGEPLDLFSRLKRKLPDWQAIYFNEDTCGFGAKRDQQAMR 112 Query: 126 RLQHRVICK-SFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIR- 183 + I SF D+ L I + Y+V+TP+ N + + P+P Sbjct: 113 FFEENNIQSFSFQDAYLHGSEEIKKNDGSKYQVFTPYY-----NKWKEAPKETPIPVSYT 167 Query: 184 ----LTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAI 239 + + P + + + + +GE+ A L F +K+ Y +RD P Sbjct: 168 AEKIFSACLFPEEEAAYREQIARIPLTHYSVGEETARRRLNTFIDQKLQSYENKRDFPYQ 227 Query: 240 QGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKS-GAFSWLNELIWREFYRHLMAFY 298 TS LS +L G LS R W +L P S ++ EL WR+FY + + + Sbjct: 228 DQTSHLSTFLRTGELSIRTIWQ-------ELASMPSSLSKETFKKELAWRDFYNMIYSTF 280 Query: 299 P---SVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRM 355 P + + F I+W D + W++G TG+PIIDAAMRQLN GWMHNRLRM Sbjct: 281 PQQKEEAIQEKF----RYIQWTNDPEMFAKWQKGETGYPIIDAAMRQLNQTGWMHNRLRM 336 Query: 356 ITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQG 415 ITASFLVK+L +DWR GE+YF L+D D A+N GGWQWAASTG D+VPYFRIFNP IQ Sbjct: 337 ITASFLVKNLHIDWRWGEKYFQKMLIDYDAANNIGGWQWAASTGTDAVPYFRIFNPIIQS 396 Query: 416 KRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND------LSLNYPLPIVDHKKACHH 469 K+FD G FI+ ++PEL VP +YIH P+ + L NYP PIVD+ + Sbjct: 397 KKFDNDGQFIKKYVPELKQVPQKYIHQPNLMNEALQTQYHVHLGENYPKPIVDYASSKKQ 456 Query: 470 TLNQYYAAKK 479 TL Y A+K+ Sbjct: 457 TLFLYEASKE 466 >gi|312903342|ref|ZP_07762522.1| FAD binding domain of DNA photolyase [Enterococcus faecalis TX0635] gi|310633218|gb|EFQ16501.1| FAD binding domain of DNA photolyase [Enterococcus faecalis TX0635] gi|315577672|gb|EFU89863.1| FAD binding domain of DNA photolyase [Enterococcus faecalis TX0630] Length = 477 Score = 261 bits (667), Expect = 2e-67, Method: Compositional matrix adjust. Identities = 177/493 (35%), Positives = 252/493 (51%), Gaps = 54/493 (10%) Query: 11 LVWLRNDLRITDNKALYAACHNSDA-KVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69 ++W R DLR+ DNKAL A NS A ++I +F P+Q+ Q SA + F +ASL + Sbjct: 4 VMWFRRDLRLQDNKALAHALQNSAADELILLFQMNPQQFIQE--SANHNAF-FASLASFK 60 Query: 70 KSLSQKG---IVFQYHQCSNFDDSIEWLDSYCLQQRV----TKLFYNRQYEINEVRRDKL 122 + + Q+ I+ E LD + +R +++N +RD+ Sbjct: 61 ERIDQEAHLQIMVG-----------EPLDLFSRLKRKLPDWQAIYFNEDTCGFGAKRDQQ 109 Query: 123 LEKRLQHRVICK-SFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPA 181 + + I SF D+ L I + Y+V+TP+ N + + P+P Sbjct: 110 AMRFFEENNIQSFSFQDAYLHGSEEIKKNDGSKYQVFTPYY-----NKWKEAPKETPIPV 164 Query: 182 IR-----LTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDI 236 + + P + + + + +GE+ A L F +K+ Y +RD Sbjct: 165 SYTAEKIFSACLFPEEEAAYREQIARIPLKHYSVGEKTARRCLNTFIDQKLRSYENKRDF 224 Query: 237 PAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKS-GAFSWLNELIWREFYRHLM 295 P TS LS +L G LS R W +L P S ++ EL WR+FY + Sbjct: 225 PYQDQTSHLSTFLRTGELSIRTIWQ-------ELASMPSSLSKETFKKELAWRDFYNMIY 277 Query: 296 AFYP---SVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNR 352 + +P + + F I+W D + W++G TG+PIIDAAMRQLN GWMHNR Sbjct: 278 STFPQQKEEAIQEKF----RYIQWTNDPEMFAKWQKGETGYPIIDAAMRQLNQTGWMHNR 333 Query: 353 LRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPT 412 LRMITASFLVK+L +DWR GE+YF L+D D A+N GGWQWAASTG D+VPYFRIFNP Sbjct: 334 LRMITASFLVKNLHIDWRWGEKYFQKMLIDYDAANNIGGWQWAASTGTDAVPYFRIFNPI 393 Query: 413 IQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND------LSLNYPLPIVDHKKA 466 IQ K+FD G FI+ ++PEL VP +YIH P+ + L NYP PIVD+ + Sbjct: 394 IQSKKFDNDGQFIKKYVPELKQVPQKYIHQPNIMNEALQTQYHVHLGENYPKPIVDYASS 453 Query: 467 CHHTLNQYYAAKK 479 TL Y A+K+ Sbjct: 454 KKQTLFLYEASKE 466 >gi|42782239|ref|NP_979486.1| deoxyribodipyrimidine photolyase family protein [Bacillus cereus ATCC 10987] gi|42738164|gb|AAS42094.1| deoxyribodipyrimidine photolyase family protein [Bacillus cereus ATCC 10987] Length = 476 Score = 261 bits (667), Expect = 2e-67, Method: Compositional matrix adjust. Identities = 162/485 (33%), Positives = 259/485 (53%), Gaps = 32/485 (6%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 +V + D R+ DN AL+ A + + V+ V++ + + +++ +++ V+K Sbjct: 6 IVMFQKDFRLYDNPALFKATQSGE--VVPVYVHD----ETFSMGSASKWWLHHAIIDVKK 59 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130 L G + S ++ + ++ Q +T +++N Y+ + ++ ++ ++ L+ + Sbjct: 60 QLEALGSTLIIRKGSTEEEILSLIE----QLGITAVYWNICYDPDRLQFNQNMKMMLEDK 115 Query: 131 -VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIR----LT 185 + CK F+ +LL P I YKV+TPF A + ++ + V +I+ L Sbjct: 116 GITCKEFNSHLLLEPWMIKKKDNTEYKVFTPFYNAFQKQVISKPISK--VQSIKWGSSLP 173 Query: 186 GPVTPSNIPRFFDYPFQA-IDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244 ++ + + P+ + I+ ++ E+ A +KF K+ Y E RD P S Sbjct: 174 ESLSVTELHLLPTIPWTSHIESIWDPTEEGAYKTCKKFFSSKLASYSEGRDFPNQNAHSM 233 Query: 245 LSPYLSIGVLSPRQCW----NRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPS 300 L+PYLS G +S R + N+ E L K + S++ +LIWREF +L+ YP Sbjct: 234 LAPYLSFGQISVRWMYHYLINKSTERQCSLFEKQVN---SFIRQLIWREFSYYLLYHYP- 289 Query: 301 VCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASF 360 + KP E WN + LL W++G TG+P IDA MR+L G+MHNR RM ASF Sbjct: 290 FTVYKPLNKNFEHFPWNNEEELLTVWQKGETGYPFIDAGMRELWQTGFMHNRARMAVASF 349 Query: 361 LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDP 420 LVK LL+ W+ G ++FM LLD D+A+N GWQW A +G D+ PYFRIFNP QG++FD Sbjct: 350 LVKHLLIPWQEGAKWFMDTLLDADIANNTMGWQWVAGSGADASPYFRIFNPITQGEKFDK 409 Query: 421 QGTFIRHWLPELNNVPTQYIH----APHSWLDKNDLSLN--YPLPIVDHKKACHHTLNQY 474 G +IR W+PEL ++P +YIH AP L K ++ L YPLP+VDHK A L Y Sbjct: 410 DGEYIRKWVPELKDMPNKYIHKPWEAPEHILQKANIKLGDTYPLPVVDHKAARERALCAY 469 Query: 475 YAAKK 479 + K+ Sbjct: 470 KSMKE 474 >gi|256961892|ref|ZP_05566063.1| phrB [Enterococcus faecalis Merz96] gi|293382960|ref|ZP_06628878.1| deoxyribodipyrimidine photolyase [Enterococcus faecalis R712] gi|293389551|ref|ZP_06634008.1| deoxyribodipyrimidine photolyase [Enterococcus faecalis S613] gi|312907569|ref|ZP_07766560.1| FAD binding domain of DNA photolyase [Enterococcus faecalis DAPTO 512] gi|312910187|ref|ZP_07769034.1| FAD binding domain of DNA photolyase [Enterococcus faecalis DAPTO 516] gi|256952388|gb|EEU69020.1| phrB [Enterococcus faecalis Merz96] gi|291079625|gb|EFE16989.1| deoxyribodipyrimidine photolyase [Enterococcus faecalis R712] gi|291081168|gb|EFE18131.1| deoxyribodipyrimidine photolyase [Enterococcus faecalis S613] gi|310626597|gb|EFQ09880.1| FAD binding domain of DNA photolyase [Enterococcus faecalis DAPTO 512] gi|311289460|gb|EFQ68016.1| FAD binding domain of DNA photolyase [Enterococcus faecalis DAPTO 516] Length = 477 Score = 261 bits (667), Expect = 2e-67, Method: Compositional matrix adjust. Identities = 175/489 (35%), Positives = 251/489 (51%), Gaps = 46/489 (9%) Query: 11 LVWLRNDLRITDNKALYAACHNSDA-KVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69 ++W R DLR+ DNKAL A NS A ++I +F P+Q+ Q SA + F +ASL ++ Sbjct: 4 VMWFRRDLRLQDNKALAHALQNSAADELILLFQMNPQQFIQE--SANHNAF-FASLASLK 60 Query: 70 KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRV----TKLFYNRQYEINEVRRDKLLEK 125 + + Q+ + Q E LD + +R +++N +RD+ + Sbjct: 61 ERIDQEAHL----QIM----VGEPLDLFSRLKRKLPDWQAIYFNEDTCGFGAKRDQQAMR 112 Query: 126 RLQHRVICK-SFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIR- 183 + I SF D+ L I + Y+V+TP+ N + + P+P Sbjct: 113 FFEENNIQSFSFQDAYLHGSEEIKKNDGSKYQVFTPYY-----NKWKEAPKETPIPVSYT 167 Query: 184 ----LTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAI 239 + + P + + + + +GE+ A L F +K+ Y +RD P Sbjct: 168 AEKIFSACLFPEEEAAYREQIARIPLTHYSVGEETARRRLNTFIDQKLQSYENKRDFPYQ 227 Query: 240 QGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYP 299 TS LS +L G LS R W L + ++ EL WR+FY + + +P Sbjct: 228 DQTSHLSTFLRTGELSIRTIWQELAS------VPSSLSKETFKKELAWRDFYNMIYSAFP 281 Query: 300 ---SVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMI 356 + + F I+W D + W++G TG+PIIDAAMRQLN GWMHNRLRMI Sbjct: 282 QQKEEAIQEKF----RYIQWTNDPEMFVKWQKGETGYPIIDAAMRQLNQTGWMHNRLRMI 337 Query: 357 TASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGK 416 TASFLVK+L +DWR GE+YF L+D D A+N GGWQWAASTG D+VPYFRIFNP IQ K Sbjct: 338 TASFLVKNLHIDWRWGEKYFQKMLIDYDAANNIGGWQWAASTGTDAVPYFRIFNPIIQSK 397 Query: 417 RFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND------LSLNYPLPIVDHKKACHHT 470 +FD G FI+ ++PEL VP +YIH P+ + L NYP PIVD+ + T Sbjct: 398 KFDNDGQFIKKYVPELKQVPQKYIHQPNIMNEALQTQYHVHLGENYPKPIVDYASSKKQT 457 Query: 471 LNQYYAAKK 479 L Y A+K+ Sbjct: 458 LFLYEASKE 466 >gi|307278038|ref|ZP_07559122.1| FAD binding domain of DNA photolyase [Enterococcus faecalis TX0860] gi|306505435|gb|EFM74621.1| FAD binding domain of DNA photolyase [Enterococcus faecalis TX0860] Length = 477 Score = 261 bits (667), Expect = 2e-67, Method: Compositional matrix adjust. Identities = 177/493 (35%), Positives = 252/493 (51%), Gaps = 54/493 (10%) Query: 11 LVWLRNDLRITDNKALYAACHNSDA-KVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69 ++W R DLR+ DNKAL A NS A ++I +F P+Q+ Q SA + F +ASL + Sbjct: 4 VMWFRRDLRLQDNKALAHALQNSAADELILLFQMNPQQFIQE--SANHNAF-FASLASFK 60 Query: 70 KSLSQKG---IVFQYHQCSNFDDSIEWLDSYCLQQRV----TKLFYNRQYEINEVRRDKL 122 + + Q+ I+ E LD + +R +++N +RD+ Sbjct: 61 ERIDQEAHLQIMVG-----------EPLDLFSRLKRKLPDWQAIYFNEDTCGFGAKRDQQ 109 Query: 123 LEKRLQHRVICK-SFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPA 181 + + I SF D+ L I + Y+V+TP+ N + + P+P Sbjct: 110 AMRFFEENNIQSFSFQDAYLHGSEEIKKNDGSKYQVFTPYY-----NKWKEAPKETPIPV 164 Query: 182 IR-----LTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDI 236 + + P + + + + +GE+ A L F +K+ Y +RD Sbjct: 165 SYTAEKIFSACLFPEEEAAYREQIARIPLKHYSVGEKTARRCLNTFIDQKLRSYENKRDF 224 Query: 237 PAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKS-GAFSWLNELIWREFYRHLM 295 P TS LS +L G LS R W +L P S ++ EL WR+FY + Sbjct: 225 PYQDQTSHLSTFLRTGELSIRTIWQ-------ELASMPSSLSKETFKKELAWRDFYNMIY 277 Query: 296 AFYP---SVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNR 352 + +P + + F I+W D + W++G TG+PIIDAAMRQLN GWMHNR Sbjct: 278 STFPQQKEEAIQEKF----RYIQWTNDPEMFAKWQKGETGYPIIDAAMRQLNQTGWMHNR 333 Query: 353 LRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPT 412 LRMITASFLVK+L +DWR GE+YF L+D D A+N GGWQWAASTG D+VPYFRIFNP Sbjct: 334 LRMITASFLVKNLHIDWRWGEKYFQKMLIDYDAANNIGGWQWAASTGTDAVPYFRIFNPI 393 Query: 413 IQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND------LSLNYPLPIVDHKKA 466 IQ K+FD G FI+ ++PEL VP +YIH P+ + L NYP PIVD+ + Sbjct: 394 IQSKKFDNDGQFIKKYVPELKQVPQKYIHQPNLMNEALQTQYHVHLGENYPKPIVDYASS 453 Query: 467 CHHTLNQYYAAKK 479 TL Y A+K+ Sbjct: 454 KKQTLFLYEASKE 466 >gi|228908916|ref|ZP_04072746.1| Deoxyribodipyrimidine photolyase [Bacillus thuringiensis IBL 200] gi|228850638|gb|EEM95462.1| Deoxyribodipyrimidine photolyase [Bacillus thuringiensis IBL 200] Length = 476 Score = 261 bits (666), Expect = 2e-67, Method: Compositional matrix adjust. Identities = 168/488 (34%), Positives = 260/488 (53%), Gaps = 38/488 (7%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 +V + D R+ DN AL+ A + + V+ V++ Q + +++ +++ V+K Sbjct: 6 IVMFQKDFRLYDNPALFEAVQSGE--VLPVYV----QDEAFSMGEASKWWLHHAVIDVKK 59 Query: 71 SLSQKG---IVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127 L G I+ + IE LD +T +++N Y+ + ++ ++ ++ L Sbjct: 60 QLEALGSTLIIRKGRTEEAILSLIEKLD-------ITAVYWNICYDPDRLKSNQKMKMML 112 Query: 128 QHR-VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIR--- 183 + + +ICK F+ +LL I YKV+TPF A + ++ + V +I+ Sbjct: 113 EDKGIICKEFNSHLLLESWIIKKKDNTEYKVFTPFYNAFQKQVIPKPVSK--VQSIKWGS 170 Query: 184 -LTGPVTPSNIPRFFDYPFQA-IDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQG 241 L ++ S + P+ + I+ M+ E+ A +KF K+ Y E RD P Sbjct: 171 SLPASLSVSELHLLPTIPWTSHIESMWEPTEEGAYKTFKKFFSSKLASYSEGRDFPNQNA 230 Query: 242 TSQLSPYLSIGVLSPRQCW----NRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAF 297 S L+PYLS G +S + + N+ E L K + S++ +LIWREF +L+ Sbjct: 231 HSMLAPYLSFGQISVKLMYHYLINKSTERQCSLFEKQVN---SFIRQLIWREFSYYLLYH 287 Query: 298 YPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMIT 357 YP + KP E WNK+ LL+ W++G TG+P IDA MR+L G+MHNR RM Sbjct: 288 YP-FAVYKPLNKNFEHFPWNKEEELLRVWQKGETGYPFIDAGMRELWQTGFMHNRTRMAV 346 Query: 358 ASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKR 417 ASFLVK LL+ W+ G ++FM LLD D+A+N GWQW A +G D+ PYFRIFNP QG++ Sbjct: 347 ASFLVKHLLIPWQEGAKWFMDTLLDADIANNIMGWQWVAGSGADASPYFRIFNPITQGEK 406 Query: 418 FDPQGTFIRHWLPELNNVPTQYIH----APHSWLDKNDLSLN--YPLPIVDHKKACHHTL 471 FD G +IR W+PEL ++P +YIH AP L K ++ L YPLP+VDHK A L Sbjct: 407 FDKNGEYIRKWVPELRDIPNKYIHKPWEAPEHILQKANIKLGNAYPLPVVDHKAARERAL 466 Query: 472 NQYYAAKK 479 Y + K+ Sbjct: 467 CAYKSMKE 474 >gi|257416128|ref|ZP_05593122.1| deoxyribodipyrimidine photolyase [Enterococcus faecalis AR01/DG] gi|257157956|gb|EEU87916.1| deoxyribodipyrimidine photolyase [Enterococcus faecalis ARO1/DG] Length = 477 Score = 261 bits (666), Expect = 2e-67, Method: Compositional matrix adjust. Identities = 177/493 (35%), Positives = 252/493 (51%), Gaps = 54/493 (10%) Query: 11 LVWLRNDLRITDNKALYAACHNSDA-KVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69 ++W R DLR+ DNKAL A NS A ++I +F P+Q+ Q SA + F +ASL + Sbjct: 4 VMWFRRDLRLQDNKALAHALQNSAADELILLFQMNPQQFIQE--SANHNAF-FASLASFK 60 Query: 70 KSLSQKG---IVFQYHQCSNFDDSIEWLDSYCLQQRV----TKLFYNRQYEINEVRRDKL 122 + + Q+ I+ E LD + +R +++N +RD+ Sbjct: 61 ERIDQEAHLQIMVG-----------EPLDLFLRLKRKLPDWQAIYFNEDTCGFGAKRDQQ 109 Query: 123 LEKRLQHRVICK-SFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPA 181 + + I SF D+ L I + Y+V+TP+ N + + P+P Sbjct: 110 AMRFFEENNIQSFSFQDAYLHGSEEIKKNDGNKYQVFTPYY-----NKWKEAPKETPIPV 164 Query: 182 IR-----LTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDI 236 + + P + + + + +GE+ A L F +K+ Y +RD Sbjct: 165 SYTAEKIFSACLFPEEEAAYGEQIARIPLTHYSVGEKTARRCLNTFIDQKLRSYENKRDF 224 Query: 237 PAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKS-GAFSWLNELIWREFYRHLM 295 P TS LS +L G LS R W +L P S ++ EL WR+FY + Sbjct: 225 PYQDQTSHLSTFLRTGELSIRTIWQ-------ELASAPSSLSKETFKKELAWRDFYNMIY 277 Query: 296 AFYP---SVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNR 352 + +P + + F I+W D + W++G TG+PIIDAAMRQLN GWMHNR Sbjct: 278 STFPQQKEEAIQEKF----RYIQWTNDPEMFVKWQKGETGYPIIDAAMRQLNQTGWMHNR 333 Query: 353 LRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPT 412 LRMITASFLVK+L +DWR GE+YF L+D D A+N GGWQWAASTG D+VPYFRIFNP Sbjct: 334 LRMITASFLVKNLHIDWRWGEKYFQKMLIDYDAANNIGGWQWAASTGTDAVPYFRIFNPI 393 Query: 413 IQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND------LSLNYPLPIVDHKKA 466 IQ K+FD G FI+ ++PEL VP +YIH P+ + L NYP PIVD+ + Sbjct: 394 IQSKKFDNDGQFIKKYVPELKQVPQKYIHQPNLMNEALQTQYHVHLGENYPKPIVDYASS 453 Query: 467 CHHTLNQYYAAKK 479 TL Y A+K+ Sbjct: 454 KKQTLFLYEASKE 466 >gi|313674183|ref|YP_004052179.1| deoxyribodipyrimidine photo-lyase [Marivirga tractuosa DSM 4126] gi|312940881|gb|ADR20071.1| Deoxyribodipyrimidine photo-lyase [Marivirga tractuosa DSM 4126] Length = 433 Score = 261 bits (666), Expect = 2e-67, Method: Compositional matrix adjust. Identities = 161/473 (34%), Positives = 232/473 (49%), Gaps = 51/473 (10%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQ-HGISARQSHFIYASLLQ 67 + + W R DLR+ DN ALY A + V+ +FI E S + +FI+ L + Sbjct: 4 ISIFWFRRDLRLYDNTALYYAIQ-ENIPVLPLFIFDSEILDDLKDKSDARVNFIHDQLTE 62 Query: 68 VQKSLSQ--KGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125 + L + G++ ++ + E S + + +F NR YE + RD+ ++ Sbjct: 63 INDQLKKIGSGVLIKHGKPE------EVYKSLIKEYNIQAVFTNRDYEPYALERDQKIDN 116 Query: 126 RLQHRVIC-KSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL 184 LQ + I F D V+ IL + YKV+TPF+ ++ L + + Sbjct: 117 ILQQKGIGFYDFKDHVIFEKDEILTGGNEPYKVFTPFKNKWLEKLESGHIHPYEIHLTAE 176 Query: 185 TGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244 IP + F+ D P E + + + Y ++RD PA GTS+ Sbjct: 177 NFFQFEPEIPTLDEIGFRESDVPIPKKE---------YEESTIQKYDQERDFPAKNGTSR 227 Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304 L +L G +S R+ + + +WLNELIWR+FY ++A +P V Sbjct: 228 LGIHLRFGTISIREA-----------VAHAQKLNDTWLNELIWRDFYSMILANFPHVVKN 276 Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364 F + I W Q W G TG+PI+DA MR+LN G+MHNR+RMI ASFL K Sbjct: 277 -AFKAKYDAIPWRNSKEDFQKWCAGKTGYPIVDAGMRELNETGYMHNRVRMIVASFLTKH 335 Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424 LL+DWR GE YF +LLD +LASNNGGWQWAA TG D+ PYFRIFNP Q +FD + Sbjct: 336 LLIDWRWGEAYFAEKLLDYELASNNGGWQWAAGTGTDAQPYFRIFNPYSQTDKFDKNKAY 395 Query: 425 IRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477 I+ W+PE+N + +YP P+VDHKKA L+ Y +A Sbjct: 396 IKKWIPEIN-------------------TSDYPEPMVDHKKARQRALDTYKSA 429 >gi|229545787|ref|ZP_04434512.1| deoxyribodipyrimidine photolyase [Enterococcus faecalis TX1322] gi|256619098|ref|ZP_05475944.1| deoxyribodipyrimidine photolyase [Enterococcus faecalis ATCC 4200] gi|256853160|ref|ZP_05558530.1| deoxyribodipyrimidine photolyase [Enterococcus faecalis T8] gi|307274924|ref|ZP_07556087.1| FAD binding domain of DNA photolyase [Enterococcus faecalis TX2134] gi|307291962|ref|ZP_07571831.1| FAD binding domain of DNA photolyase [Enterococcus faecalis TX0411] gi|229309099|gb|EEN75086.1| deoxyribodipyrimidine photolyase [Enterococcus faecalis TX1322] gi|256598625|gb|EEU17801.1| deoxyribodipyrimidine photolyase [Enterococcus faecalis ATCC 4200] gi|256711619|gb|EEU26657.1| deoxyribodipyrimidine photolyase [Enterococcus faecalis T8] gi|306496960|gb|EFM66508.1| FAD binding domain of DNA photolyase [Enterococcus faecalis TX0411] gi|306508372|gb|EFM77479.1| FAD binding domain of DNA photolyase [Enterococcus faecalis TX2134] gi|315029350|gb|EFT41282.1| FAD binding domain of DNA photolyase [Enterococcus faecalis TX4000] gi|315034003|gb|EFT45935.1| FAD binding domain of DNA photolyase [Enterococcus faecalis TX0017] Length = 477 Score = 261 bits (666), Expect = 2e-67, Method: Compositional matrix adjust. Identities = 177/493 (35%), Positives = 252/493 (51%), Gaps = 54/493 (10%) Query: 11 LVWLRNDLRITDNKALYAACHNSDA-KVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69 ++W R DLR+ DNKAL A NS A ++I +F P+Q+ Q SA + F +ASL + Sbjct: 4 VMWFRRDLRLQDNKALAHALQNSAADELILLFQMNPQQFIQE--SANHNAF-FASLASFK 60 Query: 70 KSLSQKG---IVFQYHQCSNFDDSIEWLDSYCLQQRV----TKLFYNRQYEINEVRRDKL 122 + + Q+ I+ E LD + +R +++N +RD+ Sbjct: 61 ERIDQEAHLQIMVG-----------EPLDLFSRLKRKLPDWQAIYFNEDTCGFGAKRDQQ 109 Query: 123 LEKRLQHRVICK-SFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPA 181 + + I SF D+ L I + Y+V+TP+ N + + P+P Sbjct: 110 AMRFFEENNIQSFSFQDAYLHGSEEIKKNDGSKYQVFTPYY-----NKWKEAPKETPIPV 164 Query: 182 IR-----LTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDI 236 + + P + + + + +GE+ A L F +K+ Y +RD Sbjct: 165 SYTAEKIFSACLFPEEEAAYGEQIARIPLTHYSVGEKTARRCLNTFIDQKLQSYENKRDF 224 Query: 237 PAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKS-GAFSWLNELIWREFYRHLM 295 P TS LS +L G LS R W +L P S ++ EL WR+FY + Sbjct: 225 PYQDQTSHLSTFLRTGELSIRTIWQ-------ELASAPSSLSKETFKKELAWRDFYNMIY 277 Query: 296 AFYP---SVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNR 352 + +P + + F I+W D + W++G TG+PIIDAAMRQLN GWMHNR Sbjct: 278 STFPQQKEEVIQEKF----RYIQWTNDPEMFVKWQKGETGYPIIDAAMRQLNQTGWMHNR 333 Query: 353 LRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPT 412 LRMITASFLVK+L +DWR GE+YF L+D D A+N GGWQWAASTG D+VPYFRIFNP Sbjct: 334 LRMITASFLVKNLHIDWRWGEKYFQKMLIDYDAANNIGGWQWAASTGTDAVPYFRIFNPI 393 Query: 413 IQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND------LSLNYPLPIVDHKKA 466 IQ K+FD G FI+ ++PEL VP +YIH P+ + L NYP PIVD+ + Sbjct: 394 IQSKKFDNDGQFIKKYVPELKQVPQKYIHQPNLMNEALQTQYHVHLGENYPKPIVDYASS 453 Query: 467 CHHTLNQYYAAKK 479 TL Y A+K+ Sbjct: 454 KKQTLFLYEASKE 466 >gi|257082516|ref|ZP_05576877.1| deoxyribodipyrimidine photolyase [Enterococcus faecalis E1Sol] gi|256990546|gb|EEU77848.1| deoxyribodipyrimidine photolyase [Enterococcus faecalis E1Sol] Length = 477 Score = 261 bits (666), Expect = 2e-67, Method: Compositional matrix adjust. Identities = 175/492 (35%), Positives = 250/492 (50%), Gaps = 52/492 (10%) Query: 11 LVWLRNDLRITDNKALYAACHNSDA-KVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69 ++W R DLR+ DNKAL A NS A ++I +F P+Q+ Q SA + F +ASL + Sbjct: 4 VMWFRRDLRLQDNKALAHALQNSAADELILLFQMNPQQFIQE--SANHNAF-FASLASFK 60 Query: 70 KSLSQKG---IVFQYHQCSNFDDSIEWLDSYCLQQRV----TKLFYNRQYEINEVRRDKL 122 + + Q+ I+ E LD + +R +++N +RD+ Sbjct: 61 ERIDQEAHLQIMVG-----------EPLDLFSRLKRKLPDWQAIYFNEDTCGFGAKRDQQ 109 Query: 123 LEKRLQHRVICK-SFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPA 181 + + I SF D+ L I + Y+V+TP+ N + + P+P Sbjct: 110 AMRFFEENNIQSFSFQDAYLHGSEEIKKNDGSKYQVFTPYY-----NKWKEAPKETPIPV 164 Query: 182 IR-----LTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDI 236 + + P + + + + +GE+ A L F +K+ Y +RD Sbjct: 165 SYTAEKIFSACLFPEEEAAYGEQIARIPLKHYSVGEKTARRCLNTFINQKLRSYENKRDF 224 Query: 237 PAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMA 296 P TS LS +L G LS R W L + ++ EL WR+FY + + Sbjct: 225 PYQDQTSHLSTFLRTGELSIRTIWQELAS------VPSSLSKETFKKELAWRDFYNMIYS 278 Query: 297 FYP---SVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRL 353 +P + + F I+W D + W++G TG+PIIDAAMRQLN GWMHNRL Sbjct: 279 AFPQQKEEAIQEKF----RYIQWTNDPEMFVKWQKGETGYPIIDAAMRQLNQTGWMHNRL 334 Query: 354 RMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTI 413 RMITASFLVK+L +DWR GE+YF L+D D A+N GGWQWAASTG D+VPYFRIFNP I Sbjct: 335 RMITASFLVKNLHIDWRWGEKYFQKMLIDYDAANNIGGWQWAASTGTDAVPYFRIFNPII 394 Query: 414 QGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND------LSLNYPLPIVDHKKAC 467 Q K+FD G FI+ ++PEL VP +YIH P+ + L NYP PIVD+ + Sbjct: 395 QSKKFDNDGQFIKKYVPELKQVPQKYIHQPNLMNEALQTQYHVHLGENYPKPIVDYASSK 454 Query: 468 HHTLNQYYAAKK 479 TL Y A+K+ Sbjct: 455 KQTLFLYEASKE 466 >gi|257422581|ref|ZP_05599571.1| deoxyribodipyrimidine photolyase [Enterococcus faecalis X98] gi|257164405|gb|EEU94365.1| deoxyribodipyrimidine photolyase [Enterococcus faecalis X98] gi|315155723|gb|EFT99739.1| FAD binding domain of DNA photolyase [Enterococcus faecalis TX0043] Length = 477 Score = 261 bits (666), Expect = 2e-67, Method: Compositional matrix adjust. Identities = 175/489 (35%), Positives = 250/489 (51%), Gaps = 46/489 (9%) Query: 11 LVWLRNDLRITDNKALYAACHNSDA-KVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69 ++W R DLR+ DNKAL A NS A ++I +F P+Q+ Q SA + F +ASL + Sbjct: 4 VMWFRRDLRLQDNKALAHALQNSAADELILLFQMNPQQFIQE--SANHNAF-FASLASFK 60 Query: 70 KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRV----TKLFYNRQYEINEVRRDKLLEK 125 + + Q+ + Q E LD + +R +++N +RD+ + Sbjct: 61 ERIDQEAHL----QIM----VGEPLDLFSRLKRKLPDWQAIYFNEDTCGFGAKRDQQAMR 112 Query: 126 RLQHRVICK-SFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIR- 183 + I SF D+ L I + Y+V+TP+ N + + P+P Sbjct: 113 FFEENNIQSFSFQDAYLHGSEEIKKNDGSKYQVFTPYY-----NKWKEAPKETPIPVSYT 167 Query: 184 ----LTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAI 239 + + P + + + + +GE+ A L F +K+ Y +RD P Sbjct: 168 AEKIFSACLFPEEEAAYREQIARIPLTHYSVGEETARRRLNTFIDQKLQSYENKRDFPYQ 227 Query: 240 QGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYP 299 TS LS +L G LS R W L + ++ EL WR+FY + + +P Sbjct: 228 DQTSHLSTFLRTGELSIRTIWQELAS------VPSSLSKETFKKELAWRDFYNMIYSAFP 281 Query: 300 ---SVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMI 356 + + F I+W D + W++G TG+PIIDAAMRQLN GWMHNRLRMI Sbjct: 282 QQKEEAIQEKF----RYIQWTNDPEMFVKWQKGETGYPIIDAAMRQLNQTGWMHNRLRMI 337 Query: 357 TASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGK 416 TASFLVK+L +DWR GE+YF L+D D A+N GGWQWAASTG D+VPYFRIFNP IQ K Sbjct: 338 TASFLVKNLHIDWRWGEKYFQKMLIDYDAANNIGGWQWAASTGTDAVPYFRIFNPIIQSK 397 Query: 417 RFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND------LSLNYPLPIVDHKKACHHT 470 +FD G FI+ ++PEL VP +YIH P+ + L NYP PIVD+ + T Sbjct: 398 KFDNDGQFIKKYVPELKQVPQKYIHQPNIMNEALQTQYHVHLGENYPKPIVDYASSKKQT 457 Query: 471 LNQYYAAKK 479 L Y A+K+ Sbjct: 458 LFLYEASKE 466 >gi|55377670|ref|YP_135520.1| deoxyribodipyrimidine photolyase [Haloarcula marismortui ATCC 43049] gi|55230395|gb|AAV45814.1| deoxyribodipyrimidine photolyase [Haloarcula marismortui ATCC 43049] Length = 465 Score = 261 bits (666), Expect = 2e-67, Method: Compositional matrix adjust. Identities = 163/480 (33%), Positives = 233/480 (48%), Gaps = 28/480 (5%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 + L W R DLR TDN L AA + V+ VFI G + F+ +L + Sbjct: 1 MRLHWHRRDLRATDNAGLAAATPSD--PVVPVFIFDTAVLDHAGPP--RVAFMLDALDSL 56 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128 ++ KG + D L Q K+ + + Y RD + + L Sbjct: 57 REWYRDKGSDLVVAEG----DPTSVLPELAAQHGAEKVTWGKDYSGLARERDAAVRQALD 112 Query: 129 HRVICK-SFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187 + + + ++VL PG I + Y V+T F + A P+ Sbjct: 113 DADVAREAVQNAVLHEPGEITTNDGDPYSVFTYFGRKWHDREKAA---PYDPPSADTLAD 169 Query: 188 VTPSNIPRFFDYPFQAIDPMFPI-GEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246 V +P D F+ + P G + A +L F E VY Y E+RD PA + TS+LS Sbjct: 170 VDGDALPTLADLGFEEPEADVPAAGTEEARALLDDFLDENVYEYEERRDFPADECTSRLS 229 Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP 306 +L G + R+ ++R + + + ++L WREFY ++ +P V Sbjct: 230 AHLKFGTIGIREVYDRTQAAKEGTGGDRRDSVREFQSQLAWREFYTQVLFAHPHVVSSN- 288 Query: 307 FIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLL 366 + + IEW D LLQAWK G TG+PI+DA MRQL +MHNR+RMI ASFL KDLL Sbjct: 289 YKSYENPIEWENDEELLQAWKDGDTGYPIVDAGMRQLRDEAYMHNRVRMIVASFLTKDLL 348 Query: 367 VDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIR 426 +DWR G E+F +L+D D A++NGGWQWAASTG D+ PYFRIFNP QG+ +DP +I+ Sbjct: 349 IDWRHGYEWFREKLVDHDTANDNGGWQWAASTGTDAQPYFRIFNPMTQGEDYDPNAEYIK 408 Query: 427 HWLPELNNVPTQYIHAPHSWLDKNDLSL--------NYPLPIVDHKKACHHTLNQYYAAK 478 ++PEL + + IH D ND SL YP P+VDH + L + A+ Sbjct: 409 EYVPELRDAAPEIIH------DWNDCSLTQRRSAAPEYPDPVVDHSERREEALAMFERAR 462 >gi|255975817|ref|ZP_05426403.1| deoxyribodipyrimidine photolyase [Enterococcus faecalis T2] gi|255968689|gb|EET99311.1| deoxyribodipyrimidine photolyase [Enterococcus faecalis T2] Length = 473 Score = 261 bits (666), Expect = 2e-67, Method: Compositional matrix adjust. Identities = 177/492 (35%), Positives = 251/492 (51%), Gaps = 54/492 (10%) Query: 12 VWLRNDLRITDNKALYAACHNSDA-KVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 +W R DLR+ DNKAL A NS A ++I +F P+Q+ Q SA + F +ASL ++ Sbjct: 1 MWFRRDLRLQDNKALAHALQNSAADELILLFQMNPQQFIQE--SANHNAF-FASLASFKE 57 Query: 71 SLSQKG---IVFQYHQCSNFDDSIEWLDSYCLQQRV----TKLFYNRQYEINEVRRDKLL 123 + Q+ I+ E LD + +R +++N +RD+ Sbjct: 58 RIDQEAHLQIMVG-----------EPLDLFSRLKRKLPDWQAIYFNEDTCGFGAKRDQQA 106 Query: 124 EKRLQHRVICK-SFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAI 182 + + I SF D+ L I + Y+V+TP+ N + + P+P Sbjct: 107 MRFFEENNIQSFSFQDAYLHGSEEIKKNDGSKYQVFTPYY-----NKWKEAPKETPIPVS 161 Query: 183 R-----LTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIP 237 + + P + + + + +GE+ A L F +K+ Y +RD P Sbjct: 162 YTAEKIFSACLFPEEEAAYREQIARIPLKHYSVGEKTARRCLNTFIDQKLRSYENKRDFP 221 Query: 238 AIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKS-GAFSWLNELIWREFYRHLMA 296 TS LS +L G LS R W +L P S ++ EL WR+FY + + Sbjct: 222 YQDQTSHLSTFLRTGELSIRTIWQ-------ELASMPSSLSKETFKKELAWRDFYNMIYS 274 Query: 297 FYP---SVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRL 353 +P + + F I+W D + W++G TG+PIIDAAMRQLN GWMHNRL Sbjct: 275 TFPQQKEEAIQEKF----RYIQWTNDPEMFAKWQKGETGYPIIDAAMRQLNQTGWMHNRL 330 Query: 354 RMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTI 413 RMITASFLVK+L +DWR GE+YF L+D D A+N GGWQWAASTG D+VPYFRIFNP I Sbjct: 331 RMITASFLVKNLHIDWRWGEKYFQKMLIDYDAANNIGGWQWAASTGTDAVPYFRIFNPII 390 Query: 414 QGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND------LSLNYPLPIVDHKKAC 467 Q K+FD G FI+ ++PEL VP +YIH P+ + L NYP PIVD+ + Sbjct: 391 QSKKFDNDGQFIKKYVPELKQVPQKYIHQPNLMNEALQTQYHVHLGENYPKPIVDYASSK 450 Query: 468 HHTLNQYYAAKK 479 TL Y A+K+ Sbjct: 451 KQTLFLYEASKE 462 >gi|217960578|ref|YP_002339142.1| deoxyribodipyrimidine photolyase family protein [Bacillus cereus AH187] gi|229139780|ref|ZP_04268347.1| Deoxyribodipyrimidine photolyase [Bacillus cereus BDRD-ST26] gi|217063006|gb|ACJ77256.1| deoxyribodipyrimidine photolyase family protein [Bacillus cereus AH187] gi|228643660|gb|EEK99924.1| Deoxyribodipyrimidine photolyase [Bacillus cereus BDRD-ST26] Length = 476 Score = 261 bits (666), Expect = 2e-67, Method: Compositional matrix adjust. Identities = 158/485 (32%), Positives = 258/485 (53%), Gaps = 32/485 (6%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 +V + D R+ DN AL+ A + + + V+ T I + +++ +++ V++ Sbjct: 6 IVMFQKDFRLYDNPALFEAAQSGEVLPLYVYDET------FSIGSASKWWLHHTIIDVKR 59 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130 L G + + ++ + ++ Q +T +++N Y+ + ++ ++ ++ L+ + Sbjct: 60 QLEALGSTLIIRKGNTMEEILSLIE----QLGITAVYWNICYDPDRLQSNQKMKMMLEDK 115 Query: 131 -VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIR----LT 185 + CK F+ +LL P I YKV+TPF A + ++ + V +I+ L Sbjct: 116 GITCKEFNSHLLLEPWIIKKKDNTEYKVFTPFYNAFQKQVISKPISK--VQSIKWGSSLP 173 Query: 186 GPVTPSNIPRFFDYPFQA-IDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244 ++ S + P+ + ++ ++ E+ A +KF K+ Y E RD P S Sbjct: 174 ASLSVSELHLLPTIPWTSHMESIWEPTEEGAYKTCKKFFSSKLVSYSEGRDFPNQNAHSM 233 Query: 245 LSPYLSIGVLSPRQCW----NRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPS 300 L+PYLS G +S + + N+ E+ L + S++ + IWREF +L+ YP Sbjct: 234 LAPYLSFGQISVKLMYHYLINKSNEKQCSLF---EQQVNSFIRQFIWREFSYYLLYHYP- 289 Query: 301 VCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASF 360 + KP E WN + LL+ W++G TG+P IDA MR+L G+MHNR RM ASF Sbjct: 290 FTVYKPLNKSFEYFPWNNEKKLLRVWQKGKTGYPFIDAGMRELWQTGFMHNRARMAVASF 349 Query: 361 LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDP 420 LVK LL+ W+ G ++FM LLD D+A+N GWQW A +G D+ PYFRIFNP QG++FD Sbjct: 350 LVKHLLIPWQEGAKWFMDTLLDADIANNTMGWQWVAGSGADASPYFRIFNPITQGEKFDK 409 Query: 421 QGTFIRHWLPELNNVPTQYIH----APHSWLDKNDLSLN--YPLPIVDHKKACHHTLNQY 474 G +IR W+PEL ++P +YIH AP L K ++ L YPLP+VDHK A L Y Sbjct: 410 DGEYIRKWVPELRDMPNKYIHKPWEAPEHILQKANIKLGDTYPLPVVDHKAARERALCAY 469 Query: 475 YAAKK 479 + K+ Sbjct: 470 KSMKE 474 >gi|307945306|ref|ZP_07660642.1| cryptochrome-2 [Roseibium sp. TrichSKD4] gi|307771179|gb|EFO30404.1| cryptochrome-2 [Roseibium sp. TrichSKD4] Length = 486 Score = 261 bits (666), Expect = 3e-67, Method: Compositional matrix adjust. Identities = 174/506 (34%), Positives = 258/506 (50%), Gaps = 50/506 (9%) Query: 1 MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFI---ATPEQWRQHGISARQ 57 M A +VW R DLR+ DN ALY A + VI VFI A P I A Sbjct: 1 MSNRVAFMTSIVWFRQDLRVADNAALYHAAQ--EGPVIPVFIWDDAAPLT-NSQAIGAAG 57 Query: 58 SHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEV 117 +++ SL +++ L ++ D L L+ + + +NR Y+ + Sbjct: 58 KWWLHHSLTALREQLGDLVVLR--------GDPATVLQELALETKAEAVRWNRAYDEYGI 109 Query: 118 RRDKLLEKRLQHR-VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRS 176 RDK ++ L+ ++ KSF +VL P I + YKVY+ + +A+ V A Sbjct: 110 ERDKKIKTELRESGLMVKSFKGNVLHEPWDIKTGSGSSYKVYSHYWRAVKARGVAA---P 166 Query: 177 LPVP-AIRLT------GPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYY 229 LPVP I L G +PR ++ + + ++ GEQ A L F + + Sbjct: 167 LPVPDKIELAVGWVSLGIEALDLLPRDPNWA-EGWENVWTPGEQGARERLCVFLDQGLNG 225 Query: 230 YVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWRE 289 Y E R+ P + S+LSP+L G +SP Q W + D+ + + A +L+E++WRE Sbjct: 226 YGELRNRPDLPNVSRLSPHLRFGEISPTQIWA-TTQMHADVHPEHATDADKFLSEIVWRE 284 Query: 290 FYRHLMAFYPSVC-----MGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLN 344 F HL+ +P + +G PW E E L+AW++G TG+PI+DA MR+L Sbjct: 285 FSYHLLFHFPDLPEKNWKVGFDAYPWRENAE------DLRAWQRGQTGYPIVDAGMRELW 338 Query: 345 TIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVP 404 G+MHNR+RMI ASFLVK L + W+ GE +F LLD D+A+N+ WQW + TG D+ P Sbjct: 339 QTGYMHNRVRMIVASFLVKHLRISWQHGENWFRDTLLDADVANNSASWQWVSGTGADAAP 398 Query: 405 YFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSL---------N 455 YFRIFNP Q ++FDP G +IR W+PEL ++ + AP D + + L Sbjct: 399 YFRIFNPYTQAQKFDPDGAYIRKWVPELKDLRAPQLFAPQ---DASPMDLRAAGVRLGET 455 Query: 456 YPLPIVDHKKACHHTLNQYYAAKKQS 481 YPLP+VDH+ A L+ Y A K ++ Sbjct: 456 YPLPMVDHQTARKKALDGYEAVKAEN 481 >gi|255972759|ref|ZP_05423345.1| deoxyribodipyrimidine photolyase [Enterococcus faecalis T1] gi|255963777|gb|EET96253.1| deoxyribodipyrimidine photolyase [Enterococcus faecalis T1] Length = 473 Score = 261 bits (666), Expect = 3e-67, Method: Compositional matrix adjust. Identities = 177/489 (36%), Positives = 251/489 (51%), Gaps = 48/489 (9%) Query: 12 VWLRNDLRITDNKALYAACHNSDA-KVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 +W R DLR+ DNKAL A NS A ++I +F P+Q+ Q SA + F +ASL ++ Sbjct: 1 MWFRRDLRLQDNKALAHALQNSAADELILLFQMNPQQFIQE--SANHNAF-FASLASFKE 57 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRV----TKLFYNRQYEINEVRRDKLLEKR 126 + Q+ + Q E LD + +R +++N +RD+ + Sbjct: 58 RIDQEAHL----QIM----VGEPLDLFSRLKRKLPDWQAIYFNEDTCGFGAKRDQQAMRF 109 Query: 127 LQHRVICK-SFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIR-- 183 + I SF D+ L I + Y+V+TP+ N + + P+P Sbjct: 110 FEENNIQSFSFQDAYLHGSEEIKKNDGSKYQVFTPYY-----NKWKEAPKETPIPVSYTA 164 Query: 184 ---LTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ 240 + + P + + + + +GE+ A L F +K+ Y +RD P Sbjct: 165 EKIFSACLFPEEEAAYREQIARIPLTHYSVGEETARRRLNTFIDQKLQSYENKRDFPYQD 224 Query: 241 GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKS-GAFSWLNELIWREFYRHLMAFYP 299 TS LS +L G LS R W +L P S ++ EL WR+FY + + +P Sbjct: 225 QTSHLSTFLRTGELSIRTIWQ-------ELASMPSSLSKETFKKELAWRDFYNMIYSTFP 277 Query: 300 ---SVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMI 356 + + F I+W D + W++G TG+PIIDAAMRQLN GWMHNRLRMI Sbjct: 278 QQKEEAIQEKF----RYIQWTNDPEMFAKWQKGETGYPIIDAAMRQLNQTGWMHNRLRMI 333 Query: 357 TASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGK 416 TASFLVK+L +DWR GE+YF L+D D A+N GGWQWAASTG D+VPYFRIFNP IQ K Sbjct: 334 TASFLVKNLHIDWRWGEKYFQKMLIDYDAANNIGGWQWAASTGTDAVPYFRIFNPIIQSK 393 Query: 417 RFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND------LSLNYPLPIVDHKKACHHT 470 +FD G FI+ ++PEL VP +YIH P+ + L NYP PIVD+ + T Sbjct: 394 KFDNDGQFIKKYVPELKQVPQKYIHQPNLMNEALQTQYHVHLGENYPKPIVDYASSKKQT 453 Query: 471 LNQYYAAKK 479 L Y A+K+ Sbjct: 454 LFLYEASKE 462 >gi|284989430|ref|YP_003407984.1| Deoxyribodipyrimidine photo-lyase [Geodermatophilus obscurus DSM 43160] gi|284062675|gb|ADB73613.1| Deoxyribodipyrimidine photo-lyase [Geodermatophilus obscurus DSM 43160] Length = 454 Score = 260 bits (665), Expect = 3e-67, Method: Compositional matrix adjust. Identities = 163/481 (33%), Positives = 233/481 (48%), Gaps = 46/481 (9%) Query: 7 MSVHLVWLRNDLRITDNKALYAA--CHNSDAKVIAVFIATPEQWRQHGISARQSHFIYAS 64 M L+W R DLR+ D+ AL A D V+ VF+ P W G+ RQ F+ Sbjct: 1 MPTALLWFRRDLRLADHPALLDAREAAGPDGAVVPVFVFDPRLWGPSGLPRRQ--FLLDC 58 Query: 65 LLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLE 124 L + + ++ D + + + + Y R+ RD +E Sbjct: 59 LADLGAQVDGALVMRSGDPARVLPDLVREVGAGSVHVSADTGPYGRE-------RDAAVE 111 Query: 125 KRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL 184 + L + ++ + P G + ++V++PF +A ++ + PA R Sbjct: 112 RALGDVPLVRTGSPYAVTP-GRVTKSDGTPFRVFSPFARAWREHGWRD-------PAPR- 162 Query: 185 TGPVTPSNIP-----RFFDYP-FQAIDP--MFPIGEQNALHILRKFCKEKVYYYVEQRDI 236 P +P R D P +D + P GE A R+F E++ Y R+ Sbjct: 163 -----PDAVPWSTGVRSEDPPEVPGLDGVRLPPAGEAAASDAWRRFRAERLEGYKSTRNT 217 Query: 237 PAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMA 296 P GTS+LS YL G + PR DL A S+ NEL WR+FY ++ Sbjct: 218 PGSDGTSRLSAYLKYGCVHPRTL-------LADLEDLDSDSADSFRNELAWRDFYADVLW 270 Query: 297 FYPSVCMGKPFIPWTEKIEWNKD---SHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRL 353 P +P + ++ AW +G TG+PI+DA MRQL ++HNR+ Sbjct: 271 HRPESAR-EPLDERMHAMAYDTGPDADERFAAWARGRTGYPIVDAGMRQLLGEAYVHNRV 329 Query: 354 RMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTI 413 RMI ASFLVKDL VDWR G YFM L+DGDLASNN GWQW A TG D+ PY+R+FNPT Sbjct: 330 RMIIASFLVKDLHVDWRRGARYFMQHLVDGDLASNNHGWQWVAGTGTDASPYYRVFNPTR 389 Query: 414 QGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQ 473 QG+ FDP G ++R W+PEL +VP +++H P WL + + YPLPIVDH + L + Sbjct: 390 QGREFDPDGDYVRRWVPELRDVPARHVHEP--WLAPDGVPDGYPLPIVDHAEERRVALER 447 Query: 474 Y 474 Y Sbjct: 448 Y 448 >gi|257419331|ref|ZP_05596325.1| deoxyribodipyrimidine photolyase [Enterococcus faecalis T11] gi|257161159|gb|EEU91119.1| deoxyribodipyrimidine photolyase [Enterococcus faecalis T11] Length = 477 Score = 260 bits (665), Expect = 3e-67, Method: Compositional matrix adjust. Identities = 175/489 (35%), Positives = 250/489 (51%), Gaps = 46/489 (9%) Query: 11 LVWLRNDLRITDNKALYAACHNSDA-KVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69 ++W R DLR+ DNKAL A NS A ++I +F P+Q+ Q SA + F +ASL + Sbjct: 4 VMWFRRDLRLQDNKALAHALQNSAADELILLFQMNPQQFIQE--SANHNAF-FASLASFK 60 Query: 70 KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRV----TKLFYNRQYEINEVRRDKLLEK 125 + + Q+ + Q E LD + +R +++N +RD+ + Sbjct: 61 ERIDQEAHL----QIM----VGEPLDLFSRLKRKLPDWQAIYFNEDTCGFGAKRDQQAMR 112 Query: 126 RLQHRVICK-SFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIR- 183 + I SF D+ L I + Y+V+TP+ N + + P+P Sbjct: 113 FFEENNIQSFSFQDAYLHGSEEIKKNDGSRYQVFTPYY-----NKWKEAPKETPIPVSYT 167 Query: 184 ----LTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAI 239 + + P + + + + +GE+ A L F +K+ Y +RD P Sbjct: 168 AEKIFSACLFPEEEAAYGEQIARIPLTHYSVGEETARRRLNTFIDQKLQSYENKRDFPYQ 227 Query: 240 QGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYP 299 TS LS +L G LS R W L + ++ EL WR+FY + + +P Sbjct: 228 DQTSHLSTFLRTGELSIRTIWQELAS------VPSSLSKETFKKELAWRDFYNMIYSAFP 281 Query: 300 ---SVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMI 356 + + F I+W D + W++G TG+PIIDAAMRQLN GWMHNRLRMI Sbjct: 282 QQKEEAIQEKF----RYIQWTNDPEMFVKWQKGETGYPIIDAAMRQLNQTGWMHNRLRMI 337 Query: 357 TASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGK 416 TASFLVK+L +DWR GE+YF L+D D A+N GGWQWAASTG D+VPYFRIFNP IQ K Sbjct: 338 TASFLVKNLHIDWRWGEKYFQKMLIDYDAANNIGGWQWAASTGTDAVPYFRIFNPIIQSK 397 Query: 417 RFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND------LSLNYPLPIVDHKKACHHT 470 +FD G FI+ ++PEL VP +YIH P+ + L NYP PIVD+ + T Sbjct: 398 KFDNDGQFIKKYVPELKQVPQKYIHQPNLMNEALQTQYHVHLGENYPKPIVDYASSKKQT 457 Query: 471 LNQYYAAKK 479 L Y A+K+ Sbjct: 458 LFLYEASKE 466 >gi|196037804|ref|ZP_03105114.1| deoxyribodipyrimidine photo-lyase [Bacillus cereus NVH0597-99] gi|196031074|gb|EDX69671.1| deoxyribodipyrimidine photo-lyase [Bacillus cereus NVH0597-99] Length = 476 Score = 260 bits (665), Expect = 3e-67, Method: Compositional matrix adjust. Identities = 161/483 (33%), Positives = 257/483 (53%), Gaps = 28/483 (5%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 +V + D R+ DN AL+ A + + V+ V++ + + +++ +++ V+K Sbjct: 6 IVMFQKDFRLYDNPALFEAAQSGE--VVPVYVHD----ETFSMGSASKWWLHHAIIDVKK 59 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130 L G + S ++ + S Q +T +++N Y+ + ++ ++ ++ L+ + Sbjct: 60 QLEALGSTLIIRKGSTQEEIL----SLVEQLGITAVYWNICYDPDRLQSNQKMKMMLEDK 115 Query: 131 -VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189 +ICK F+ +LL P I YKV+TPF A + ++ + + + PV+ Sbjct: 116 GMICKEFNSHLLLEPWIIKKKDNTEYKVFTPFYNAFQKQVIHKPISKVQSIKGGNSLPVS 175 Query: 190 --PSNIPRFFDYPFQA-IDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246 S + P+ + ++ ++ E+ A ++F K+ Y E RD P S L+ Sbjct: 176 LSVSELHLLPTIPWTSHMESIWEPTEEGAYKTWKEFFSSKLASYSEGRDFPNQNAHSMLA 235 Query: 247 PYLSIGVLSPRQCW----NRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVC 302 PYLS G +S + + N+ E L K + S++ +LIWREF +L+ YP Sbjct: 236 PYLSFGQISVKLIYHYLINKSTESQCSLFEKQVN---SFIRQLIWREFSYYLLYHYPFTA 292 Query: 303 MGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLV 362 KP E WN + LL+ W++G TG+P IDA MR+L G+MHNR RM ASFLV Sbjct: 293 Y-KPLNKSFEHFPWNNEEELLRVWQKGDTGYPFIDAGMRELWQTGFMHNRTRMAVASFLV 351 Query: 363 KDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQG 422 K LL+ W+ G ++FM LLD D+A+N GWQW A +G D+ PYFRIFNP QG++FD G Sbjct: 352 KHLLIPWQEGAKWFMDTLLDADIANNTMGWQWVAGSGADASPYFRIFNPITQGEKFDKNG 411 Query: 423 TFIRHWLPELNNVPTQYIH----APHSWLDKNDLSLN--YPLPIVDHKKACHHTLNQYYA 476 +IR W+PEL ++P +YIH AP L K ++ L YPLP+VDHK A L Y + Sbjct: 412 EYIRKWVPELKDMPNKYIHKPWEAPEHILQKANIQLGHTYPLPVVDHKAARERALCAYKS 471 Query: 477 AKK 479 K+ Sbjct: 472 MKE 474 >gi|324327109|gb|ADY22369.1| deoxyribodipyrimidine photolyase family protein [Bacillus thuringiensis serovar finitimus YBT-020] Length = 476 Score = 260 bits (665), Expect = 3e-67, Method: Compositional matrix adjust. Identities = 163/488 (33%), Positives = 253/488 (51%), Gaps = 38/488 (7%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 +V + D R+ DN AL+ A + + V+ V++ I + +++ +++ VQ+ Sbjct: 6 IVMFQKDFRLYDNPALFEAAQSGE--VVPVYVHD----ETFSIGSASKWWLHHAIIDVQR 59 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130 L G + + ++ + S Q +T +++N Y+ ++ ++ ++ L+ + Sbjct: 60 QLEAVGSTLIIRKGNILEEIL----SLIKQLGITAVYWNICYDPERLQFNQKMKMMLEDK 115 Query: 131 -VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSL-------PVPAI 182 + CK F+ +LL P I YKV+TPF A + +V + + +PA Sbjct: 116 GITCKEFNSHLLLEPWVIKKKDNTEYKVFTPFYNAFQKQIVPKPISKVQRIKGGNSLPAS 175 Query: 183 RLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGT 242 + R+ + DP E+ A +KF K+ Y E RD P Sbjct: 176 LSVSELHLLPTIRWTTHMESIWDPT----EEGAYKTCKKFFSSKLASYSEGRDFPNENAH 231 Query: 243 SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAF-----SWLNELIWREFYRHLMAF 297 S L+PYLS G +S + ++ L +D + + F S++ +LIWREF +L+ Sbjct: 232 SMLAPYLSFGQISVKWMYHYL----IDKSTERQCSLFEKQVNSFIRQLIWREFSYYLLYH 287 Query: 298 YPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMIT 357 YP + KP E WNK+ LL W++G TG+P IDA MR+L G+MHNR RM Sbjct: 288 YP-FTVYKPLNKNFEHFPWNKEEELLTVWQKGETGYPFIDAGMRELWQTGFMHNRARMAV 346 Query: 358 ASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKR 417 ASFLVK LL+ W+ G ++FM LLD D+A+N GWQW A +G D+ PYFRIFNP QG++ Sbjct: 347 ASFLVKHLLIPWQEGAKWFMDTLLDADIANNTMGWQWVAGSGADASPYFRIFNPITQGEK 406 Query: 418 FDPQGTFIRHWLPELNNVPTQYIH----APHSWLDKNDLSLN--YPLPIVDHKKACHHTL 471 FD G +IR W+PEL ++P +YIH AP L K ++ L YPLP+VDHK A L Sbjct: 407 FDKNGEYIRKWVPELRDIPNKYIHKPWEAPEHILQKANIKLGHTYPLPVVDHKAARERAL 466 Query: 472 NQYYAAKK 479 Y + K+ Sbjct: 467 CAYKSMKE 474 >gi|315172271|gb|EFU16288.1| FAD binding domain of DNA photolyase [Enterococcus faecalis TX1346] Length = 477 Score = 260 bits (665), Expect = 3e-67, Method: Compositional matrix adjust. Identities = 174/492 (35%), Positives = 249/492 (50%), Gaps = 52/492 (10%) Query: 11 LVWLRNDLRITDNKALYAACHNSDA-KVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69 ++W R DLR+ DNKA A NS A ++I +F P+Q+ Q SA + F +ASL + Sbjct: 4 VMWFRRDLRLQDNKAFAHALQNSAADELILLFQMNPQQFIQE--SANHNAF-FASLASFK 60 Query: 70 KSLSQKG---IVFQYHQCSNFDDSIEWLDSYCLQQRV----TKLFYNRQYEINEVRRDKL 122 + + Q+ I+ E LD + +R +++N +RD+ Sbjct: 61 ERIDQEAHLQIMVG-----------EPLDLFSRLKRKLPDWQAIYFNEDTCGFGAKRDQQ 109 Query: 123 LEKRLQHRVICK-SFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPA 181 + + I SF D+ L I + Y+V+TP+ N + + P+P Sbjct: 110 AMRFFEENNIQSFSFQDAYLHGSEEIKKNDGSKYQVFTPYY-----NKWKEAPKETPIPV 164 Query: 182 IR-----LTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDI 236 + + P + + + + +GE+ A L F +K+ Y +RD Sbjct: 165 SYTAEKIFSACLFPEEEAAYREQIARIPLKHYSVGEKTARRCLNTFIDQKLQSYENKRDF 224 Query: 237 PAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMA 296 P TS LS +L G LS R W L + ++ EL WR+FY + + Sbjct: 225 PYQDQTSHLSTFLRTGELSIRTIWQELAS------VPSSLSKETFKKELAWRDFYNMIYS 278 Query: 297 FYP---SVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRL 353 +P + + F I+W D + W++G TG+PIIDAAMRQLN GWMHNRL Sbjct: 279 TFPQQKEEAIQEKF----RYIQWTNDPEMFAKWQKGETGYPIIDAAMRQLNQTGWMHNRL 334 Query: 354 RMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTI 413 RMITASFLVK+L +DWR GE+YF L+D D A+N GGWQWAASTG D+VPYFRIFNP I Sbjct: 335 RMITASFLVKNLHIDWRWGEKYFQKMLIDYDAANNIGGWQWAASTGTDAVPYFRIFNPII 394 Query: 414 QGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND------LSLNYPLPIVDHKKAC 467 Q K+FD G FI+ ++PEL VP +YIH P+ + L NYP PIVD+ + Sbjct: 395 QSKKFDNDGQFIKKYVPELKQVPQKYIHQPNLMNEALQTQYHVHLGENYPKPIVDYASSK 454 Query: 468 HHTLNQYYAAKK 479 TL Y A+K+ Sbjct: 455 KQTLFLYEASKE 466 >gi|222096635|ref|YP_002530692.1| deoxyribodipyrimidine photolyase [Bacillus cereus Q1] gi|221240693|gb|ACM13403.1| deoxyribodipyrimidine photolyase [Bacillus cereus Q1] Length = 476 Score = 260 bits (664), Expect = 4e-67, Method: Compositional matrix adjust. Identities = 160/485 (32%), Positives = 258/485 (53%), Gaps = 32/485 (6%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 +V + D R+ DN AL+ A + + V+ V++ I + +++ +++ V++ Sbjct: 6 IVMFQKDFRLYDNPALFEAAQSGE--VVPVYVHD----ETFSIGSASKWWLHHTIIDVKR 59 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130 L G + +++E + S Q +T +++N Y+ ++ ++ ++ L+ + Sbjct: 60 QLEALGSTLIIRK----GNTLEEILSLIKQLGITAVYWNICYDPERLQFNQKMKMMLEDK 115 Query: 131 -VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIR----LT 185 + CK F+ +LL P I YKV+TPF A + ++ + V +I+ L Sbjct: 116 GITCKEFNSHLLLEPWIIKKKDNTEYKVFTPFYNAFQKQVISKPISK--VQSIKWGSSLP 173 Query: 186 GPVTPSNIPRFFDYPFQA-IDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244 ++ S + P+ + ++ ++ E+ A +KF K+ Y E RD P S Sbjct: 174 ASLSVSELHLLPTIPWTSHMESIWEPTEEGAYKTFKKFFSSKLVSYSEGRDFPNQNAHSM 233 Query: 245 LSPYLSIGVLSPRQCW----NRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPS 300 L+PYLS G +S + + N+ E+ L + S++ + IWREF +L+ YP Sbjct: 234 LAPYLSFGQISVKLMYHYLINKSNEKQCSLF---EQQVNSFIRQFIWREFSYYLLYHYP- 289 Query: 301 VCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASF 360 + KP E WN + LL+ W++G TG+P IDA MR+L G+MHNR RM ASF Sbjct: 290 FTVYKPLNKNFEHFPWNNEEELLRVWQKGETGYPFIDAGMRELWQTGFMHNRARMAVASF 349 Query: 361 LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDP 420 LVK LL+ W+ G ++FM LLD D+A+N GWQW A +G D+ PYFRIFNP QG++FD Sbjct: 350 LVKHLLIPWQEGAKWFMDTLLDADIANNTMGWQWVAGSGADASPYFRIFNPITQGEKFDK 409 Query: 421 QGTFIRHWLPELNNVPTQYIH----APHSWLDKNDLSLN--YPLPIVDHKKACHHTLNQY 474 G +IR W+PEL ++P +YIH AP L K ++ L YPLP+VDHK A L Y Sbjct: 410 DGEYIRKWVPELRDMPNKYIHKPWEAPEHILQKANIKLGDTYPLPVVDHKAARERALCAY 469 Query: 475 YAAKK 479 + K+ Sbjct: 470 KSMKE 474 >gi|313620250|gb|EFR91701.1| deoxyribodipyrimidine photo-lyase [Listeria innocua FSL S4-378] Length = 302 Score = 260 bits (664), Expect = 4e-67, Method: Compositional matrix adjust. Identities = 131/282 (46%), Positives = 171/282 (60%), Gaps = 13/282 (4%) Query: 206 PMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKE 265 P F GE+ A L F KE + Y + RD+PA+ TS LS YL G +S R W L++ Sbjct: 24 PAFDSGEKAANTRLANFVKEDLADYDKARDVPALDKTSHLSRYLRTGEISIRTVWQALQK 83 Query: 266 EFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQA 325 E + G ++ EL WR+FY + +P +P IEW + + Sbjct: 84 E------EATEGRATFEKELCWRDFYNMIYVSFPK-QKNEPIQENYRFIEWENNREFFKK 136 Query: 326 WKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDL 385 W+ G TGFP++DAAMRQL GWMHNRLRMITASFL KDLL+DWR GE+YF L+D D Sbjct: 137 WQDGQTGFPLVDAAMRQLKETGWMHNRLRMITASFLTKDLLIDWRFGEKYFQQMLIDYDP 196 Query: 386 ASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHS 445 ASN GGWQWAASTG D+VPYFRIFNPT Q ++FDP GTFIR ++ EL ++P ++IH P Sbjct: 197 ASNIGGWQWAASTGTDAVPYFRIFNPTTQSEKFDPDGTFIRKYVKELRDLPDKFIHQPEK 256 Query: 446 WLDKND------LSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481 + L +YPLPI+DHK+ + +Y +K+ S Sbjct: 257 MSETEQKEHGLILGKDYPLPIIDHKERRKLAIARYEFSKEHS 298 >gi|256762534|ref|ZP_05503114.1| deoxyribodipyrimidine photolyase [Enterococcus faecalis T3] gi|256683785|gb|EEU23480.1| deoxyribodipyrimidine photolyase [Enterococcus faecalis T3] Length = 473 Score = 260 bits (664), Expect = 4e-67, Method: Compositional matrix adjust. Identities = 175/488 (35%), Positives = 249/488 (51%), Gaps = 46/488 (9%) Query: 12 VWLRNDLRITDNKALYAACHNSDA-KVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 +W R DLR+ DNKAL A NS A ++I +F P+Q+ Q SA + F +ASL ++ Sbjct: 1 MWFRRDLRLQDNKALAHALQNSAADELILLFQMNPQQFIQE--SANHNAF-FASLASFKE 57 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRV----TKLFYNRQYEINEVRRDKLLEKR 126 + Q+ + Q E LD + +R +++N +RD+ + Sbjct: 58 RIDQEAHL----QIM----VGEPLDLFSRLKRKLPDWQAIYFNEDTCGFGAKRDQQAMRF 109 Query: 127 LQHRVICK-SFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIR-- 183 + I SF D+ L I + Y+V+TP+ N + + P+P Sbjct: 110 FEENNIQSFSFQDAYLHGSEEIKKNDGSKYQVFTPYY-----NKWKEAPKETPIPVSYTA 164 Query: 184 ---LTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ 240 + + P + + + + +GE+ A L F +K+ Y +RD P Sbjct: 165 EKIFSACLFPEEEAAYREQIARIPLTHYSVGEETARRRLNTFIDQKLQSYENKRDFPYQD 224 Query: 241 GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYP- 299 TS LS +L G LS R W L + ++ EL WR+FY + + +P Sbjct: 225 QTSHLSTFLRTGELSIRTIWQELAS------VPSSLSKETFKKELAWRDFYNMIYSAFPQ 278 Query: 300 --SVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMIT 357 + + F I+W D + W++G TG+PIIDAAMRQLN GWMHNRLRMIT Sbjct: 279 QKEEAIQEKF----RYIQWTNDPEMFVKWQKGETGYPIIDAAMRQLNQTGWMHNRLRMIT 334 Query: 358 ASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKR 417 ASFLVK+L +DWR GE+YF L+D D A+N GGWQWAASTG D+VPYFRIFNP IQ K+ Sbjct: 335 ASFLVKNLHIDWRWGEKYFQKMLIDYDAANNIGGWQWAASTGTDAVPYFRIFNPIIQSKK 394 Query: 418 FDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND------LSLNYPLPIVDHKKACHHTL 471 FD G FI+ ++PEL VP +YIH P+ + L NYP PIVD+ + TL Sbjct: 395 FDNDGQFIKKYVPELKQVPQKYIHQPNIMNEALQTQYHVHLGENYPKPIVDYASSKKQTL 454 Query: 472 NQYYAAKK 479 Y A+K+ Sbjct: 455 FLYEASKE 462 >gi|254504495|ref|ZP_05116646.1| deoxyribodipyrimidine photolyase family [Labrenzia alexandrii DFL-11] gi|222440566|gb|EEE47245.1| deoxyribodipyrimidine photolyase family [Labrenzia alexandrii DFL-11] Length = 478 Score = 260 bits (664), Expect = 4e-67, Method: Compositional matrix adjust. Identities = 166/483 (34%), Positives = 251/483 (51%), Gaps = 30/483 (6%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFI-ATPEQ-WRQHGISARQSHFIYASLLQV 68 +VW R DLR++DN AL+ A V+ V+I TP+Q +H + +++ SL + Sbjct: 4 IVWFRQDLRVSDNPALHEATRR--GPVLPVYILETPDQSGDEHPLGGASRWWLHHSLAAL 61 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128 ++ L G+VF + + + +++NR YE + + RD L++ L+ Sbjct: 62 KEDLP--GLVFLRGSARHL------IPELVQETGADAVYWNRCYEPHAIERDSALKESLK 113 Query: 129 HRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPA-IRLTG 186 +I KSF S+L P + YKVY+PF KA Q + D LP PA I T Sbjct: 114 TDLIDAKSFKASLLFEPWDVETKTGGPYKVYSPFWKA-AQKISVPD--PLPAPAEINFTA 170 Query: 187 PVTPSNIPRFFDYPF-----QAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQG 241 N+ P + + ++ G A L +F + Y ++R+ P + Sbjct: 171 YDRGDNLSDLELLPTKPNWAEGWEDIWQPGAAGAKDRLIEFLDHGLSGYGDKRNRPDLPN 230 Query: 242 TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSV 301 S+LSP+L G +SP+Q W+ + G +L+E+ WREF HL+ YP + Sbjct: 231 VSRLSPHLHFGDISPKQVWSATQHATARKSSLSSDG-HKFLSEIAWREFSYHLLYHYPQL 289 Query: 302 CMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFL 361 K + P + W + L+ W+ G TG+P++DA MR+L G+MHNR+RM+ SFL Sbjct: 290 PE-KNWRPAFDAYPWRESEEDLKKWQTGLTGYPMVDAGMRELWHTGYMHNRVRMLAGSFL 348 Query: 362 VKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQ 421 VK L + W+ GE +F L+D DLA+N+ WQW A +G D+ PYFRIFNP QG +FDP Sbjct: 349 VKHLRLHWKHGEAWFRDTLVDADLANNSASWQWVAGSGADAAPYFRIFNPISQGPKFDPD 408 Query: 422 GTFIRHWLPELNNVPTQYI----HAPHSWLDKNDLSLN--YPLPIVDHKKACHHTLNQYY 475 G ++R W+PEL +PT+++ AP S L + + L YP PIVDH KA L+ Y Sbjct: 409 GKYVRRWVPELAKLPTKHLFSPFEAPASVLSEAGVRLGETYPYPIVDHGKARQAALDGYE 468 Query: 476 AAK 478 K Sbjct: 469 DVK 471 >gi|196032015|ref|ZP_03099429.1| deoxyribodipyrimidine photolyase family protein [Bacillus cereus W] gi|228928215|ref|ZP_04091256.1| Deoxyribodipyrimidine photolyase [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228946776|ref|ZP_04109081.1| Deoxyribodipyrimidine photolyase [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|229122697|ref|ZP_04251907.1| Deoxyribodipyrimidine photolyase [Bacillus cereus 95/8201] gi|195994766|gb|EDX58720.1| deoxyribodipyrimidine photolyase family protein [Bacillus cereus W] gi|228660748|gb|EEL16378.1| Deoxyribodipyrimidine photolyase [Bacillus cereus 95/8201] gi|228812900|gb|EEM59216.1| Deoxyribodipyrimidine photolyase [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228831262|gb|EEM76858.1| Deoxyribodipyrimidine photolyase [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] Length = 476 Score = 260 bits (664), Expect = 4e-67, Method: Compositional matrix adjust. Identities = 162/483 (33%), Positives = 257/483 (53%), Gaps = 28/483 (5%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 +V + D R+ DN AL+ A + + V+ V++ + + +++ +++ V+K Sbjct: 6 IVMFQKDFRLYDNPALFEAAQSGE--VVPVYVHD----ETFSMGSASKWWLHHAIIDVKK 59 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130 L G + S + E + S Q +T +++N Y+ + ++ ++ ++ L+ + Sbjct: 60 QLEALGSTLIIRKGS----TQEKILSLVEQLGITAVYWNICYDPDRLQSNQKMKMMLEDK 115 Query: 131 -VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189 +ICK F+ +LL P I YKV+TPF A + ++ + + + PV+ Sbjct: 116 GMICKEFNSHLLLEPWIIKKKDNTEYKVFTPFYNAFQKQVIHKPISKVQSIKGGNSLPVS 175 Query: 190 --PSNIPRFFDYPFQA-IDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246 S + P+ + ++ ++ E+ A ++F K+ Y E RD P S L+ Sbjct: 176 LSVSELHLLPTIPWTSHMESIWEPTEEGAYKTWKEFFSSKLASYSEGRDFPNQNAHSMLA 235 Query: 247 PYLSIGVLSPRQCW----NRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVC 302 PYLS G +S + + N+ E L K + S++ +LIWREF +L+ YP Sbjct: 236 PYLSFGQISVKLIYHYLINKSTESQCSLFEKQVN---SFIRQLIWREFSYYLLYHYPFTA 292 Query: 303 MGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLV 362 KP E WN + LL+ W++G TG+P IDA MR+L G+MHNR RM ASFLV Sbjct: 293 Y-KPLNKSFEHFPWNNEEELLRVWQKGDTGYPFIDAGMRELWQTGFMHNRTRMAVASFLV 351 Query: 363 KDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQG 422 K LL+ W+ G ++FM LLD D+A+N GWQW A +G D+ PYFRIFNP QG++FD G Sbjct: 352 KHLLIPWQEGAKWFMDTLLDADIANNTMGWQWVAGSGADASPYFRIFNPITQGEKFDKNG 411 Query: 423 TFIRHWLPELNNVPTQYIH----APHSWLDKNDLSLN--YPLPIVDHKKACHHTLNQYYA 476 +IR W+PEL ++P +YIH AP L K ++ L YPLP+VDHK A L Y + Sbjct: 412 EYIREWVPELKDMPNKYIHKPWEAPEHILQKANIQLGHTYPLPVVDHKAARERALCAYKS 471 Query: 477 AKK 479 K+ Sbjct: 472 MKE 474 >gi|300860779|ref|ZP_07106866.1| putative deoxyribodipyrimidine photo-lyase [Enterococcus faecalis TUSoD Ef11] gi|300849818|gb|EFK77568.1| putative deoxyribodipyrimidine photo-lyase [Enterococcus faecalis TUSoD Ef11] gi|315145075|gb|EFT89091.1| FAD binding domain of DNA photolyase [Enterococcus faecalis TX2141] gi|315160408|gb|EFU04425.1| FAD binding domain of DNA photolyase [Enterococcus faecalis TX0645] Length = 477 Score = 260 bits (664), Expect = 5e-67, Method: Compositional matrix adjust. Identities = 175/489 (35%), Positives = 251/489 (51%), Gaps = 46/489 (9%) Query: 11 LVWLRNDLRITDNKALYAACHNSDA-KVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69 ++W R DLR+ DNKAL A NS A ++I +F P+Q+ Q SA + F +ASL ++ Sbjct: 4 VMWFRRDLRLQDNKALAHALQNSAADELILLFQMNPQQFIQE--SANHNAF-FASLASLK 60 Query: 70 KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRV----TKLFYNRQYEINEVRRDKLLEK 125 + + Q+ + Q E LD + +R +++N +RD+ + Sbjct: 61 ERIDQEAHL----QIM----VGEPLDLFSRLKRKLPDWQAIYFNEDTCGFGAKRDQQAMR 112 Query: 126 RLQHRVICK-SFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIR- 183 + I SF D+ L I + Y+V+TP+ N + + P+P Sbjct: 113 FFEENNIQSFSFQDAYLHGSEEIKKNDGSKYQVFTPYY-----NKWKEAPKETPIPVSYT 167 Query: 184 ----LTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAI 239 + + P + + + + +GE+ A L F +K+ Y +RD P Sbjct: 168 AEKIFSACLFPEEEAAYREQIARIPLTHYSVGEETARRRLNTFIDQKLQSYENKRDFPYQ 227 Query: 240 QGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYP 299 TS LS +L G LS R W L + ++ EL WR+FY + + +P Sbjct: 228 DQTSHLSTFLRTGELSIRTIWQELAS------VPSSLSKETFKKELAWRDFYNMIYSAFP 281 Query: 300 ---SVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMI 356 + + F I+W D + W++G TG+PIIDAAMRQLN GWMHNRLRMI Sbjct: 282 QQKEEAIQEKF----RYIQWINDPEMFVKWQKGETGYPIIDAAMRQLNQTGWMHNRLRMI 337 Query: 357 TASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGK 416 TASFLVK+L +DWR GE+YF L+D D A+N GGWQWAASTG D+VPYFRIFNP IQ K Sbjct: 338 TASFLVKNLHIDWRWGEKYFQKMLIDYDAANNIGGWQWAASTGTDAVPYFRIFNPIIQSK 397 Query: 417 RFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND------LSLNYPLPIVDHKKACHHT 470 +FD G FI+ ++PEL VP +YIH P+ + L NYP PIVD+ + T Sbjct: 398 KFDNDGQFIKKYVPELKQVPQKYIHQPNLMNEALQTQYHVHLGENYPKPIVDYASSKKQT 457 Query: 471 LNQYYAAKK 479 L Y A+K+ Sbjct: 458 LFLYEASKE 466 >gi|119509710|ref|ZP_01628855.1| deoxyribopyrimidine photolyase [Nodularia spumigena CCY9414] gi|119465576|gb|EAW46468.1| deoxyribopyrimidine photolyase [Nodularia spumigena CCY9414] Length = 482 Score = 259 bits (663), Expect = 5e-67, Method: Compositional matrix adjust. Identities = 164/469 (34%), Positives = 240/469 (51%), Gaps = 28/469 (5%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 L W R DLRI+DN L AA S AKV+ VF P+ + ++ + ++ L +Q+ Sbjct: 6 LFWHRRDLRISDNTGLVAARERS-AKVVGVFCLDPQILSRDDVAPARVTYMMGCLQALQQ 64 Query: 71 SLSQKGI-VFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH 129 +Q G + H + +E + + +F+N E RD+ + L+ Sbjct: 65 RYAQVGSQLLILH-----GNPVEVIPALAKALNAKAVFWNWDVEPYSQTRDRTIIDILKS 119 Query: 130 RVICKSFD--DSVLLPPGSILNHALQMYKVYTPF--------RKALIQNLVQADLRSLPV 179 I + D +L P I Y VY+PF + ++ L A + Sbjct: 120 NSIEFLHENWDQILHAPDEIRTGTKSPYTVYSPFWKNWSSKPKAKSVETLQNAAGLTEAE 179 Query: 180 PAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAI 239 I V P R + + + P GE A L++F + Y EQR++P + Sbjct: 180 QEIAKQAGVIPLPTARDLGFIWDGELSISP-GEAAAQERLQEFTDSAITEYQEQRNLPGV 238 Query: 240 QGTSQLSPYLSIGVLSPRQCWN-RLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFY 298 GTS+LS L GV+ RQ W L+ + + + +W EL WREFY+H M + Sbjct: 239 DGTSRLSAALKFGVIGIRQVWEATLEAQEFSRSEETAASIRTWQQELAWREFYQHAMYNF 298 Query: 299 PSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITA 358 P + G + + W + QAW +G TG+PI+DAAMRQLN +GWMHNR RMI A Sbjct: 299 PELAEGA-YRDTFKNFPWQNNDEYFQAWCEGRTGYPIVDAAMRQLNEMGWMHNRCRMIVA 357 Query: 359 SFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRF 418 SFL KDL+++ ++GE+YFM +L+DGDL++NNGGWQW+ S+G D P RIFNP Q ++F Sbjct: 358 SFLTKDLMINPQLGEKYFMQKLIDGDLSANNGGWQWSTSSGMDPKP-LRIFNPASQAQKF 416 Query: 419 DPQGTFIRHWLPELNNVPTQYI---HAPHSWLDKNDLSLNYPLPIVDHK 464 D +G +IR W+ EL +V T+Y+ P L S+ YP PIVDHK Sbjct: 417 DGEGEYIRQWVSELRSVDTEYLVTGKIPPLELQ----SIGYPAPIVDHK 461 >gi|301054669|ref|YP_003792880.1| deoxyribodipyrimidine photolyase [Bacillus anthracis CI] gi|300376838|gb|ADK05742.1| deoxyribodipyrimidine photolyase [Bacillus cereus biovar anthracis str. CI] Length = 476 Score = 259 bits (663), Expect = 6e-67, Method: Compositional matrix adjust. Identities = 158/485 (32%), Positives = 258/485 (53%), Gaps = 32/485 (6%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 +V + D R+ DN AL+ A + + V+ V++ I + +++ +++ V++ Sbjct: 6 IVMFQKDFRLYDNPALFEAAQSGE--VLPVYVHD----ETFSIGSASKWWLHHTIIDVKR 59 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130 L G + + ++ + ++ Q +T +++N Y+ ++ ++ ++ L+ + Sbjct: 60 QLEALGSTLIIRKGNTMEEILSLIE----QLGITAVYWNICYDPERLQFNQKMKMMLEDK 115 Query: 131 -VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIR----LT 185 + CK F+ +LL P I YKV+TPF A + ++ + V +I+ L Sbjct: 116 GITCKEFNSHLLLEPWIIKKKDNTEYKVFTPFYNAFQKQVISKPISK--VQSIKWGSSLP 173 Query: 186 GPVTPSNIPRFFDYPFQA-IDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244 ++ S + P+ + ++ ++ E+ A +KF K+ Y E RD P S Sbjct: 174 ASLSVSELHLLPTIPWTSHMESIWEPTEEGAYKTFKKFFSSKLVSYSEGRDFPNQNAHSM 233 Query: 245 LSPYLSIGVLSPRQCW----NRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPS 300 L+PYLS G +S + + N+ E+ L + S++ + IWREF +L+ YP Sbjct: 234 LAPYLSFGQISVKLIYHYLINKSNEKQCSLF---EQQVNSFIRQFIWREFSYYLLYHYP- 289 Query: 301 VCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASF 360 + KP E WN + LL+ W++G TG+P IDA MR+L G+MHNR RM ASF Sbjct: 290 FTVYKPLNKNFEHFPWNNEEELLRVWQKGETGYPFIDAGMRELWQTGFMHNRARMAVASF 349 Query: 361 LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDP 420 LVK LL+ W+ G ++FM LLD D+A+N GWQW A +G D+ PYFRIFNP QG++FD Sbjct: 350 LVKHLLIPWQEGAKWFMDTLLDADIANNTMGWQWVAGSGADASPYFRIFNPITQGEKFDK 409 Query: 421 QGTFIRHWLPELNNVPTQYIH----APHSWLDKNDLSLN--YPLPIVDHKKACHHTLNQY 474 G +IR W+PEL ++P +YIH AP L K ++ L YPLP+VDHK A L Y Sbjct: 410 DGEYIRKWVPELRDMPNKYIHKPWEAPEHILQKANIKLGDTYPLPVVDHKAARERALCAY 469 Query: 475 YAAKK 479 + K+ Sbjct: 470 KSMKE 474 >gi|119477185|ref|ZP_01617421.1| putative photolyase [marine gamma proteobacterium HTCC2143] gi|119449548|gb|EAW30786.1| putative photolyase [marine gamma proteobacterium HTCC2143] Length = 477 Score = 259 bits (662), Expect = 6e-67, Method: Compositional matrix adjust. Identities = 168/491 (34%), Positives = 243/491 (49%), Gaps = 43/491 (8%) Query: 12 VWLRNDLRITDNKALYAACHNSDAKVIAVFIATPE---QWRQHGISARQSHFIYASLLQV 68 +W R DLR+ DN AL AAC + +I V+I + QW+ G S HF A L Sbjct: 1 MWFRQDLRLADNPALCAACERGE--IIPVYILDDQGAGQWKMGGASRWWLHFALADL--- 55 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128 SL Q ++Q D++ L Q + +NR YE + RD ++ L+ Sbjct: 56 NASLKQCLQIYQ-------GDALTILGDLADQTGAATVVWNRCYEPWRIGRDATIKTSLK 108 Query: 129 HRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPF-RKALIQNLVQADLRSLPVPAIRLTG 186 + +SF+ S+L P +L YKV+TP+ R+ + + P Sbjct: 109 ESGLDVQSFNGSLLWEPWQVLKKDGTPYKVFTPYYRRGCLSTVAPRRPMDPPKTLKVFVD 168 Query: 187 PVTPSNIPRFFDYPFQAID----PMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGT 242 + P A D + I E A L +F ++ Y E R+ PA Q Sbjct: 169 SGDSLELDNLNLLPKIAWDESMKACWDISEAAAHARLDEFVMNELQDYREGRNFPAKQNV 228 Query: 243 SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVC 302 S+LSPYL G +SP W R E I + ++++EL WREF +L+ +P + Sbjct: 229 SRLSPYLHFGQISPNSAWYRAAE--AGAFINNEQSLDTFMSELGWREFSYYLLYHWPKLP 286 Query: 303 MGK-----PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMIT 357 PW N L AW+QG TG+P++DA MR+L + G+MHNR+RM+ Sbjct: 287 TENLQTRFDLFPWA-----NNTDEDLSAWQQGKTGYPLVDAGMRELYSTGYMHNRVRMVV 341 Query: 358 ASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKR 417 SFLVK+LL+ W GEE+F L+D DLASN+ WQW A G D+ P+FRIFNP Q ++ Sbjct: 342 GSFLVKNLLIHWHRGEEWFWDCLVDADLASNSASWQWIAGCGADAAPFFRIFNPITQSEK 401 Query: 418 FDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND--------LSLNYPLPIVDHKKACHH 469 FD QG++IR ++PEL ++P +YIHAP WL + + +NYP P+VD K + Sbjct: 402 FDKQGSYIRRYVPELKDMPEKYIHAP--WLAPAEVLAVAGVNIGINYPEPVVDIKVSRAR 459 Query: 470 TLNQYYAAKKQ 480 L + K Q Sbjct: 460 ALEAFAVTKIQ 470 >gi|148271713|ref|YP_001221274.1| deoxyribodipyrimidine photo-lyase [Clavibacter michiganensis subsp. michiganensis NCPPB 382] gi|147829643|emb|CAN00559.1| Deoxyribodipyrimidine photo-lyase [Clavibacter michiganensis subsp. michiganensis NCPPB 382] Length = 508 Score = 259 bits (662), Expect = 7e-67, Method: Compositional matrix adjust. Identities = 172/509 (33%), Positives = 261/509 (51%), Gaps = 48/509 (9%) Query: 3 ATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIA-VFIATPEQWRQHGISARQSHFI 61 A A +VWLR+DLR+ DN AL+AA + V+ V + R G +AR ++ Sbjct: 17 AEEAHGPSIVWLRDDLRVADNPALHAAVERGEPIVVLYVLDEESDGIRPLGGAARW--WL 74 Query: 62 YASLLQVQKSLSQKG--IVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRR 119 + SL ++ +SL + G +V + + ++ +D + + +NR+Y E+ Sbjct: 75 HMSLSRLAESLRELGSDLVLRRGKAADV------VDDLVREIGAGAVLWNRRYGGAEIAV 128 Query: 120 DKLLEKRLQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLP 178 D ++K L R + +SF S+L+ P ++ N + ++VYTPF KA + + + LP Sbjct: 129 DTAIKKDLGDRGLDVRSFQGSLLVEPWTVTNKQGEPFRVYTPFWKAAQER--EEPRKPLP 186 Query: 179 VPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPI-----------GEQNALHILRKFCKEKV 227 P L P PR D + P P GE L L F ++ Sbjct: 187 APK-ELD---APREAPRSDDLDGWGLLPTKPDWAAGLRESCDPGEAAGLQRLEDFVHHEL 242 Query: 228 YYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIW 287 Y QRD PA TS+LS YL G +SP Q W+R++ + + A +L+EL W Sbjct: 243 EDYAAQRDEPAAMTTSRLSAYLRWGEVSPFQVWHRIQRTRGKKVGGDEVNATKFLSELGW 302 Query: 288 REFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDS-HLLQAWKQGYTGFPIIDAAMRQLNTI 346 REF HL+ P + + F+P + W++ + L AW++G TG P++DA MR L Sbjct: 303 REFSYHLLYHQPDLAT-RNFVPRFDAFPWDEPTDETLGAWQRGETGVPLVDAGMRALWKD 361 Query: 347 GWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYF 406 G +HNR+RM+ ASFL+K+LL+DWR GE++F L+D D A+N WQW A +G D+ PYF Sbjct: 362 GHLHNRVRMVVASFLIKNLLIDWRHGEQWFWDTLVDADAANNAASWQWVAGSGADAAPYF 421 Query: 407 RIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLN----------- 455 R+FNP +QG++FDP G +IR ++PEL + P +H P W DL + Sbjct: 422 RVFNPVLQGQKFDPSGEYIRSYVPELAHAPRDVVHEP--WKAMGDLVASAEDGADDSDDG 479 Query: 456 ----YPLPIVDHKKACHHTLNQYYAAKKQ 480 YP PIVD K++ L Y K + Sbjct: 480 GLAAYPAPIVDLKESRQRALAAYDEIKDR 508 >gi|296775719|gb|ADH42995.1| Deoxyribodipyrimidine photolyase [uncultured SAR11 cluster alpha proteobacterium H17925_38M03] Length = 466 Score = 259 bits (662), Expect = 7e-67, Method: Compositional matrix adjust. Identities = 157/476 (32%), Positives = 251/476 (52%), Gaps = 25/476 (5%) Query: 8 SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67 + L WLR+D R N L A + +V+ ++ + Q ++ SL Sbjct: 4 KIGLFWLRDDFRFVKNHGLIEATTKHN-QVVVFYLYKKNIYNDQ---EAQKWWLSKSLSN 59 Query: 68 VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDK-LLEKR 126 +K L++ IV + + ++F + L ++++ +++N+ YE + ++ D+ LL Sbjct: 60 FKKKLNELNIVLEIVETNSFKIFFDAL----IKKKDFXIYWNKVYEPDYLKFDEYLLNIF 115 Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPF----RKALIQNLVQAD--LRSLPVP 180 + + K F + L I +KV+TPF K + + + ++ Sbjct: 116 KNNNIYXKRFKGNALNEINEIKKGDGTPFKVFTPFWRTAEKFFSEKIPSKERVIKKCKNK 175 Query: 181 AIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ 240 ++ I D+ F+ + ++ EQ+A L+KF KE++ Y E R+ P+I+ Sbjct: 176 TNFFKNSISVEKILPEKDW-FKNFEKIWLPDEQHAFKELQKFIKERIVNYSEGRNFPSIK 234 Query: 241 GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKS-GAFSWLNELIWREFYRHLMAFYP 299 GTS+LSP++ G L WN + KPK G +L E+ WREF L+ +P Sbjct: 235 GTSKLSPFIKFGQLHVETIWNEC------IKKKPKKIGTSKFLTEIGWREFNHSLINHFP 288 Query: 300 SVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITAS 359 + + + +K W K+S L WK+G TG+PI+DA MR+L + GWMHNR+RMI S Sbjct: 289 HM-LKSNYSKKFDKFPWEKNSKFLDKWKKGMTGYPIVDAGMRELYSTGWMHNRVRMIVGS 347 Query: 360 FLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFD 419 FLVK LL+DW+ GE+YF + LLD ASN GWQW A G D+ PYFRIFNP +QG++FD Sbjct: 348 FLVKHLLIDWKYGEKYFKNCLLDYSPASNVSGWQWVAGCGADAAPYFRIFNPILQGEKFD 407 Query: 420 PQGTFIRHWLPELNNVPTQYIHAPHSW-LDKNDLSLNYPLPIVDHKKACHHTLNQY 474 G +++ W+PEL N+ ++IH P + +K L +YP PIV H++A LN + Sbjct: 408 KDGEYVKKWVPELKNLSKKFIHKPWEFNNEKFKLGRDYPYPIVKHEEAREKALNAF 463 >gi|315169001|gb|EFU13018.1| FAD binding domain of DNA photolyase [Enterococcus faecalis TX1341] Length = 477 Score = 259 bits (662), Expect = 8e-67, Method: Compositional matrix adjust. Identities = 176/489 (35%), Positives = 249/489 (50%), Gaps = 46/489 (9%) Query: 11 LVWLRNDLRITDNKALYAACHNSDA-KVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69 ++W R DLR+ DNKAL A NS A ++I +F P+Q+ Q SA + F +ASL + Sbjct: 4 VMWFRRDLRLQDNKALAHALQNSAADELILLFQMNPQQFIQE--SANHNAF-FASLASFK 60 Query: 70 KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRV----TKLFYNRQYEINEVRRDKLLEK 125 + + Q+ + Q E LD + +R +++N +RD+ + Sbjct: 61 ERIDQEAHL----QIM----VGEPLDLFSRLKRKLPDWQAIYFNEDICGFGAKRDQQAMR 112 Query: 126 RLQHRVICK-SFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIR- 183 + I SF D+ L I + Y+V+TP+ N + + P+P Sbjct: 113 FFEENNIQSFSFQDAYLHGSEEIKKNDGSKYQVFTPYY-----NKWKEAPKETPIPVSYT 167 Query: 184 ----LTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAI 239 + + P + + + + +GE+ A L F +K+ Y +RD P Sbjct: 168 AEKIFSACLFPEEEAAYREQIARIPLTHYSVGEETARRRLNTFIDQKLQSYENKRDFPYQ 227 Query: 240 QGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYP 299 TS LS +L G LS R W +E F EL WR+FY + + +P Sbjct: 228 DQTSHLSTFLRTGELSIRTIW----QELASASSSLSKETFK--KELAWRDFYNMIYSTFP 281 Query: 300 ---SVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMI 356 + + F I+W D + W++G TG+PIIDAAMRQLN GWMHNRLRMI Sbjct: 282 QQKEEAIQEKF----RYIQWTNDPEMFAKWQKGETGYPIIDAAMRQLNQTGWMHNRLRMI 337 Query: 357 TASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGK 416 TASFLVK+L +DWR GE+YF L+D D A+N GGWQWAASTG D+VPYFRIFNP IQ K Sbjct: 338 TASFLVKNLHIDWRWGEKYFQKMLIDYDAANNIGGWQWAASTGTDAVPYFRIFNPIIQSK 397 Query: 417 RFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND------LSLNYPLPIVDHKKACHHT 470 +FD G FI+ ++PEL VP +YIH P+ + L NYP PIVD+ + T Sbjct: 398 KFDNDGQFIKKYVPELKQVPQKYIHQPNLMNEALQTQYHVHLGENYPKPIVDYASSKKQT 457 Query: 471 LNQYYAAKK 479 L Y A+K+ Sbjct: 458 LFLYEASKE 466 >gi|171319558|ref|ZP_02908656.1| Deoxyribodipyrimidine photo-lyase [Burkholderia ambifaria MEX-5] gi|171095203|gb|EDT40197.1| Deoxyribodipyrimidine photo-lyase [Burkholderia ambifaria MEX-5] Length = 500 Score = 259 bits (661), Expect = 8e-67, Method: Compositional matrix adjust. Identities = 161/500 (32%), Positives = 248/500 (49%), Gaps = 27/500 (5%) Query: 1 MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHF 60 M A ++++ +VW R+DLR+TD AL A S ++ V++ + + + Sbjct: 1 MSAKSSVAPAVVWFRDDLRVTDQPALMRAV-ASGRPLVCVYVDDTGEGAGRALGGAARWW 59 Query: 61 IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120 ++ SL + +L++ G + D+ ++ +++NR+Y + D Sbjct: 60 LHGSLATLDAALARHGGRLLLLRG----DARREIERVVHDTGAAAVYWNRRYAQPQRDAD 115 Query: 121 KLLEKRLQ-HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPV 179 L+ L+ H + +S + S+L P ++ A ++V+T + +A+ ++ A LP Sbjct: 116 AALKASLKAHGLEVESSNGSLLNEPWEVMTGAGTPFQVFTAYWRAVRRDRTVA--APLPA 173 Query: 180 PAIRLTGPVTPSNIPRFFDYPFQAIDP-----------MFPIGEQNALHI-LRKFCKEKV 227 P P R A+ P +P ++ H L F + Sbjct: 174 PERIAFHPWPAGVRERALALDTLALRPHAPDWAGGLRDAWPAPDEAGAHARLDAFVHASL 233 Query: 228 YYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIW 287 Y + RD P TS+LSP+L G +SPRQ W+ ++ +GA +L+EL W Sbjct: 234 AGYADTRDRPGEPATSRLSPFLRFGNVSPRQVWHAVQGVAQAGGAACAAGAEKFLSELGW 293 Query: 288 REFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIG 347 REF L+ +P++ F + I W D L+AW++G TG+P++DA MR+L T G Sbjct: 294 REFSHVLLYHFPALATDN-FRAQFDAIPWRDDPAALRAWQRGLTGYPLVDAGMRELWTTG 352 Query: 348 WMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFR 407 WMHNR+RM+ ASFLVK LL+DWR GE +F L+D D A+N WQW A G D+ PYFR Sbjct: 353 WMHNRVRMVVASFLVKHLLIDWRAGERWFHDTLVDADAANNPANWQWVAGCGADAAPYFR 412 Query: 408 IFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND------LSLNYPLPIV 461 IFNP QG++FDPQG ++R W+PEL + IHAP L L+YP PIV Sbjct: 413 IFNPVAQGRKFDPQGAYVRRWVPELAGLDAAAIHAPWEASAAQLAAAGVRLGLDYPAPIV 472 Query: 462 DHKKACHHTLNQYYAAKKQS 481 DH A L+ K S Sbjct: 473 DHDGARRRALDALATLPKPS 492 >gi|13476703|ref|NP_108272.1| blue light photoreceptor cryptochrome [Mesorhizobium loti MAFF303099] gi|14027464|dbj|BAB53733.1| blue light photoreceptor cryptochrome [Mesorhizobium loti MAFF303099] Length = 477 Score = 259 bits (661), Expect = 8e-67, Method: Compositional matrix adjust. Identities = 170/488 (34%), Positives = 252/488 (51%), Gaps = 31/488 (6%) Query: 6 AMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFI--ATPEQWRQHGISARQSHFIYA 63 A + +V R DLR+ DN AL AA V+A++I T + R G ++R +++ Sbjct: 5 AQAPTIVLFRRDLRMGDNAALAAAAERG-VPVVALYILDETTKGLRAMGAASRW--WLHH 61 Query: 64 SLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLL 123 SL + L + G D + +D+ +F+NR+Y+ +EV D L Sbjct: 62 SLAALGDLLRKAGANLFLAHGRTEDAVAKAIDASG----ANCVFWNRRYDPSEVAVDARL 117 Query: 124 EKRLQHRVICK-SFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAI 182 + L+ + + SFD ++L P + + YKV+TPF KA+ + D P Sbjct: 118 KAALREKGLTALSFDGALLHEPSLLKTGSGGFYKVFTPFWKAMADKVDVRDPIDTPGQID 177 Query: 183 RLTGPVTPSNI------PRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDI 236 G + + P D+ + + P GE+ A L +F + + Y QRD Sbjct: 178 GWRGELGGLRLDELDLLPSKPDWAYGLRETWTP-GEKGAQARLGQFIEHGLANYERQRDY 236 Query: 237 PAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMA 296 P TS+LSP+L+ G ++P Q F L SG + E+ WREF HL+ Sbjct: 237 PGQPSTSRLSPHLTFGEITPFQI-------FAALRRSKSSGTSKFRAEIGWREFSYHLLF 289 Query: 297 FYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMI 356 P + G+ F P + + W D L+ W++G TG+PI+DA MR+L GWMHNR+RMI Sbjct: 290 HNPDLS-GRNFRPEFDAMSWRDDIRALRTWQRGLTGYPIVDAGMRELWRTGWMHNRVRMI 348 Query: 357 TASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGK 416 ASFL+KDL++DWR GE++F L+D D A+N WQW A +G D PYFRIFNP +QG+ Sbjct: 349 VASFLIKDLMIDWRHGEKWFWDTLVDADAANNPASWQWVAGSGADPAPYFRIFNPVLQGE 408 Query: 417 RFDPQGTFIRHWLPELNNVPTQYIH----APHSWLDKNDLSLN--YPLPIVDHKKACHHT 470 +FDP G ++R +PE++ +P +YIH AP + L + L YP PIVDH A Sbjct: 409 KFDPHGDYVRQHVPEISALPDRYIHRPWEAPAAVLKDKGIVLGKTYPNPIVDHGAARERA 468 Query: 471 LNQYYAAK 478 L Y + K Sbjct: 469 LIVYQSLK 476 >gi|282899861|ref|ZP_06307822.1| DNA photolyase, FAD-binding [Cylindrospermopsis raciborskii CS-505] gi|281195131|gb|EFA70067.1| DNA photolyase, FAD-binding [Cylindrospermopsis raciborskii CS-505] Length = 484 Score = 258 bits (660), Expect = 1e-66, Method: Compositional matrix adjust. Identities = 177/481 (36%), Positives = 248/481 (51%), Gaps = 30/481 (6%) Query: 1 MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHF 60 M T + L W R DLR +DN L A + KV+ VF P Q I+ + + Sbjct: 1 MGYLTMSDLILFWHRRDLRTSDNTGLGVAREKT-KKVVGVFCLDPNILGQDDIAPARITY 59 Query: 61 IYASLLQVQKSLSQKGI-VFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRR 119 + L ++ SQ G + H D+ + + + +F+N E R Sbjct: 60 MIGCLKSLESLYSQAGSQLLILH-----DNPVRAIPNLAEALEAKAVFWNWDVEPYAQIR 114 Query: 120 DKLLEKRLQHRVI--CKSFDDSVLLPPGSILNHALQMYKVYTPF-RKALIQNLVQ----- 171 D+ + L+ R I + D +L P +IL+ A Y VYTPF +K Q V+ Sbjct: 115 DRDVTLALKTRGIETLEKNWDQLLHSPDTILSGAGTPYTVYTPFWKKWHSQPKVEPIEIL 174 Query: 172 ADLRSLPVPAIRLTGPVTPSNIPRFFDYPF-QAIDPMFPIGEQNALHILRKFCKEKVYYY 230 A+ +L + +P D F + + + GE A L F + Y Sbjct: 175 ANCENLTAREEEIAEKSGVIKLPTARDLGFIWSGELILEPGEVAAWERLTDFLDCAIDEY 234 Query: 231 VEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFS-----WLNEL 285 E+R+ PAI GTS LSP L GV+ R W + +E LL S FS W EL Sbjct: 235 EEKRNYPAIDGTSLLSPALKFGVIGIRTIWQKTQE----LLAISNSQEFSNGIITWQKEL 290 Query: 286 IWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNT 345 WREFY+H M +P + G + + W+ + QAW +G TG+PI+DAAMRQLN Sbjct: 291 AWREFYQHAMYHFPELAEGA-YRDVFKNFPWSDNQEHFQAWCEGKTGYPIVDAAMRQLNE 349 Query: 346 IGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPY 405 GWMHNR RMI ASFL KDL+++ + GE+YFM +L+DGDL++NNGGWQW+AS+G D P Sbjct: 350 TGWMHNRCRMIVASFLTKDLIINPQWGEKYFMQKLIDGDLSANNGGWQWSASSGMDPKP- 408 Query: 406 FRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQY-IHAPHSWLDKNDLSLNYPLPIVDHK 464 RIFNP+ Q ++FD G +IRHW+ EL +V T+Y I + L++ S+ YP IVDHK Sbjct: 409 LRIFNPSSQAQKFDSDGEYIRHWVGELASVETEYLIGGNITPLERQ--SVGYPTSIVDHK 466 Query: 465 K 465 K Sbjct: 467 K 467 >gi|75910490|ref|YP_324786.1| deoxyribodipyrimidine photo-lyase type I [Anabaena variabilis ATCC 29413] gi|75704215|gb|ABA23891.1| deoxyribodipyrimidine photo-lyase type I [Anabaena variabilis ATCC 29413] Length = 479 Score = 258 bits (660), Expect = 1e-66, Method: Compositional matrix adjust. Identities = 163/473 (34%), Positives = 246/473 (52%), Gaps = 34/473 (7%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 L W R DLRITDN L A +S +KV+ VF P + ++ + ++ SL ++Q+ Sbjct: 6 LFWHRRDLRITDNIGLATARQHS-SKVVGVFCLDPNILERDDVAPVRVTYMIGSLQELQQ 64 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130 Q G + D ++ + +F+N E RD+ + L+ + Sbjct: 65 RYVQAGSQLLILRG----DPVQAIPHLAEALNAKAVFWNWDVEPYSQTRDRAIIATLKDK 120 Query: 131 VI-CKSFD-DSVLLPPGSILNHALQMYKVYTPFRKAL--------------IQNLVQADL 174 I C + + D +L P I + + Y VYTPF K ++ L +A+ Sbjct: 121 GIQCLTHNWDQILHSPDEIRSGSNTPYTVYTPFWKNWSSKPKAKPVETLHNVEGLTEAEQ 180 Query: 175 RSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQR 234 ++ T ++ F+D D + GE A L +F + + Y EQR Sbjct: 181 ELAQKAGVKAL--PTAKDLGFFWD-----ADLIIAPGEAAAQAKLAEFTAKAITEYQEQR 233 Query: 235 DIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAF-SWLNELIWREFYRH 293 + P + GTSQLS L GV+ R W E + + + + +W EL WREFY+H Sbjct: 234 NFPGVNGTSQLSAALKFGVIGIRTVWQTTLEALENSRSEETTTSIRTWQQELAWREFYQH 293 Query: 294 LMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRL 353 M +P + G + + W + QAW +G TG+PI+DAAMRQ+N GWMHNR Sbjct: 294 AMYNFPELADGA-YRATFKNFPWETNEEHFQAWCEGKTGYPIVDAAMRQMNESGWMHNRC 352 Query: 354 RMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTI 413 RMI ASFL KDLL++ + GE+YFM +L+DGDL++NNGGWQW+AS+G D P RIFNP Sbjct: 353 RMIVASFLTKDLLINPQWGEKYFMQKLIDGDLSANNGGWQWSASSGMDPKP-LRIFNPAS 411 Query: 414 QGKRFDPQGTFIRHWLPELNNVPTQY-IHAPHSWLDKNDLSLNYPLPIVDHKK 465 Q ++FDP +IR W+PEL ++ T+Y + + L+++ ++ Y PIVDH+K Sbjct: 412 QSQKFDPDAEYIRQWVPELRSMDTEYLVTGKITPLERH--AVGYVKPIVDHQK 462 >gi|148256271|ref|YP_001240856.1| deoxyribodipyrimidine photo-lyase type I [Bradyrhizobium sp. BTAi1] gi|146408444|gb|ABQ36950.1| deoxyribodipyrimidine photo-lyase type I [Bradyrhizobium sp. BTAi1] Length = 481 Score = 258 bits (660), Expect = 1e-66, Method: Compositional matrix adjust. Identities = 162/486 (33%), Positives = 245/486 (50%), Gaps = 40/486 (8%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 +VW R LR++D+ AL+AA S A VI ++ E + ++ SL +Q Sbjct: 7 VVWFRESLRLSDHPALHAAA-TSGAPVICCYVYDTESAALRPLGGASRWWLAQSLRALQD 65 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH- 129 L G+ + S + + + + +++N + +E L Sbjct: 66 ELDALGVKLVIRRGP----SAKAISELAREASTSAVYWNDVAQTGPRAVAAEVEAALDAI 121 Query: 130 RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189 V + F D +L+ P + + +V+TPF K ++ + + LPVP +RL+ P Sbjct: 122 GVKSRVFADDLLIDPAELRGKDGRGPRVFTPFWKRVLA--LGDPPKPLPVP-VRLSSPSG 178 Query: 190 PSNIPRFFDYPFQAIDPMFP-----------IGEQNALHILRKFCKEKVYYYVEQRDIPA 238 +++ A++P P GE+ A L KF + V Y RD P Sbjct: 179 VASL----TVDKLALEPTSPDWAGGLRTTWRAGERAAQARLAKFLETTVRGYAADRDRPD 234 Query: 239 IQGTSQLSPYLSIGVLSPRQCWN--RLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMA 296 I+ TS+LSP+L G +SPRQ W+ R E + G +L+EL WREF RHL+ Sbjct: 235 IEATSRLSPHLRFGEISPRQIWHAARFAAEQQPAFAR---GIDKFLSELGWREFSRHLLF 291 Query: 297 FYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMI 356 P + + P + W++D+ L+AW++G TG+PI+DA MR+L G MHNR+RM+ Sbjct: 292 NNPDLAT-RNLQPSFDAFPWSQDAAALRAWQRGQTGYPIVDAGMRELWHTGSMHNRVRMV 350 Query: 357 TASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGK 416 AS LVK LL+DWR+GE++F L+D D SN WQW A +G D+ PYFR+FNP +QG+ Sbjct: 351 AASLLVKHLLIDWRLGEQWFWDTLVDADPGSNPASWQWVAGSGADAAPYFRVFNPVLQGE 410 Query: 417 RFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKN--------DLSLNYPLPIVDHKKACH 468 +FD GT++R W+PEL +P IH P W K L +YP P+VDH+ Sbjct: 411 KFDSSGTYVRRWVPELARLPAALIHQP--WAAKPLELAEAGVVLGRSYPAPVVDHRHGRE 468 Query: 469 HTLNQY 474 L Y Sbjct: 469 RALAAY 474 >gi|292657024|ref|YP_003536921.1| deoxyribodipyrimidine photolyase [Haloferax volcanii DS2] gi|291372710|gb|ADE04937.1| deoxyribodipyrimidine photolyase [Haloferax volcanii DS2] Length = 484 Score = 258 bits (660), Expect = 1e-66, Method: Compositional matrix adjust. Identities = 158/492 (32%), Positives = 237/492 (48%), Gaps = 33/492 (6%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 + L W R DLR+ DN+ L A V +F+ + G A + ++ +L ++ Sbjct: 1 MQLHWHRRDLRVADNRGLATAAEAG--PVAPLFVFDRDVLDHAG--APRVRYLLDALAEL 56 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128 + + ++G + D + + + + Y RD + L Sbjct: 57 RGAYQERGSDLLVARG----DPRTVVPAVAAAFDAERAVWGIDYSGLARERDADVRLALD 112 Query: 129 HRVICKS-FDDSVLLPPGSILNHALQMYKVYT-------------PFRKALIQNLVQADL 174 + + D++ PPGSI +A Y VYT P+ + +LV D Sbjct: 113 DAGVAREPVHDAIFHPPGSITTNAGDTYSVYTYFWKKWRDRDKPDPYPEPDADDLV--DA 170 Query: 175 RSLPVPAIRLTG-----PVTPSNIPRFFDYPFQAIDPMF-PIGEQNALHILRKFCKEKVY 228 +L A LT + +P D F+ P G + A L FC + +Y Sbjct: 171 ATLESAAEDLTNGDAEFDIAVGGLPTISDLGFEEPSASVQPAGTEAARERLSAFCADAIY 230 Query: 229 YYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWR 288 Y + RD P TS+LS L G + R+ + + + + ++L WR Sbjct: 231 RYADDRDYPTRDATSRLSTDLKFGTIGIREVYAATAAAREGVGGERDESVEEFQSQLAWR 290 Query: 289 EFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGW 348 EFY H++ +P+V + + + E I W D L AWK G TG+PI+DA MRQL + Sbjct: 291 EFYAHVLRGHPNVVT-ENYKEYEEDIAWRDDDEELAAWKAGETGYPIVDAGMRQLREEAY 349 Query: 349 MHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRI 408 MHNR+RMI ASFL KDLL DWR G +F L D D A++NGGWQWAASTG D+ PYFRI Sbjct: 350 MHNRVRMIVASFLTKDLLCDWRHGYAHFREHLADHDTANDNGGWQWAASTGTDAQPYFRI 409 Query: 409 FNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSW--LDKNDLSLNYPLPIVDHKKA 466 FNP QG+R+DP G +I+ ++PEL++V IH H L++ L+ +YP PIVDH + Sbjct: 410 FNPMTQGERYDPDGEYIKRYVPELSDVTANTIHEWHELTDLERERLAPDYPEPIVDHAER 469 Query: 467 CHHTLNQYYAAK 478 ++ + AA+ Sbjct: 470 RERAISMFEAAR 481 >gi|297180123|gb|ADI16346.1| deoxyribodipyrimidine photolyase [uncultured bacterium HF130_01F24] Length = 478 Score = 258 bits (660), Expect = 1e-66, Method: Compositional matrix adjust. Identities = 164/494 (33%), Positives = 252/494 (51%), Gaps = 46/494 (9%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 +VW R DLR+ DN AL A S +V+ ++I + + ++ SL + + Sbjct: 8 IVWFRQDLRLQDNPALEFAA--SVGEVLPIYIVDEKNAADWRLGRASQWWLNESLRSLNE 65 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH- 129 S++ +++ D + ++ + ++ +F+NR YE +V RDK ++ ++ Sbjct: 66 SMNGALCLYR-------GDPLGIIEKLITEHSISNIFWNRCYEPWQVLRDKTIKSEVRKF 118 Query: 130 RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLP-------VPAI 182 +SF+ +L P I YKV+TPF K Q+ L+ P V I Sbjct: 119 GAKARSFNGFLLNEPWEIAKSDGTPYKVFTPFYK-------QSRLKGTPREASIDYVSKI 171 Query: 183 RLTG------PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDI 236 R + N+ D+ + P GE+ +L+ F + + Y RD Sbjct: 172 RFVSNSKKNREIDSLNLLNENDWSTEMASRWTP-GERGGEQVLKLFLERGLCNYKIGRDF 230 Query: 237 PAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMA 296 P + S+LSPYL G LSP W+++ V I+ ++ F EL+WREF L+ Sbjct: 231 PDKEAVSRLSPYLHFGELSPNYVWHKVNNFAVLENIETQAEHFH--RELVWREFSYSLIH 288 Query: 297 FYPSVC---MGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRL 353 ++P + + + F + W K+ ++ W+ G TG+P+IDA MR+L + G+MHNR+ Sbjct: 289 YFPDLTYRNLNRRF----DDFPWKKNDQFMKKWRTGMTGYPLIDAGMRELASTGYMHNRV 344 Query: 354 RMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTI 413 RMITASFLVK+LL+DWR G E+F L+D DLA+N+ WQW A +G D+ PYFRIFNP Sbjct: 345 RMITASFLVKNLLIDWRNGAEWFWDSLIDADLANNSCSWQWVAGSGADAAPYFRIFNPVT 404 Query: 414 QGKRFDPQGTFIRHWLPELNNVPTQYIH----APHSWLDKNDLSLN--YPLPIVDHKKAC 467 Q K+FDP +IR W+ EL P +YIH AP S L + L+ YP IVD K + Sbjct: 405 QSKKFDPDAKYIRRWITELEKCPNKYIHDPSSAPESELQHFGIKLDQTYPSAIVDLKTSR 464 Query: 468 HHTLNQYYAAKKQS 481 L Y + K +S Sbjct: 465 EAALRAYQSLKGRS 478 >gi|220913214|ref|YP_002488523.1| deoxyribodipyrimidine photo-lyase [Arthrobacter chlorophenolicus A6] gi|219860092|gb|ACL40434.1| Deoxyribodipyrimidine photo-lyase [Arthrobacter chlorophenolicus A6] Length = 475 Score = 258 bits (660), Expect = 1e-66, Method: Compositional matrix adjust. Identities = 172/483 (35%), Positives = 245/483 (50%), Gaps = 37/483 (7%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 LVWLR+DLR+ DN AL A H A + V++ E + +++ SL + Sbjct: 7 TSLVWLRDDLRLDDNPALSEAAHLG-APMTVVYVLDEESPGVRPLGGASRWWLHHSLAAL 65 Query: 69 QKSLSQKG--IVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDK-LLEK 125 L KG +V + + ++ + S Q LF+NR+Y E D L E Sbjct: 66 AAVLEAKGSRLVLRRGKAADV------ISSLAAQTHAGHLFWNRRYGGPERDIDAGLKEW 119 Query: 126 RLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRS-------LP 178 + + SF ++L P +I A YKVY+PF +A L D+R LP Sbjct: 120 AAGNGIEASSFQANLLFEPWTIKTGAGGPYKVYSPFWRAC---LAAGDIRDPLDIPKDLP 176 Query: 179 VPAIRLTG-PVTPSN-----IPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVE 232 PA G P + S +P D+ + P GE+ A+ L F + Y Sbjct: 177 EPAASGRGLPASDSLGSWKLLPTSPDWSGGLAETWVP-GEKGAVDRLTDFLDGPIEDYGT 235 Query: 233 QRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYR 292 R+IP +GTS+LSPYL G +SP + W ++ + G F +EL WREF Sbjct: 236 GRNIPGTEGTSRLSPYLRFGEVSPFRVWREIRRRHP-RQVPADVGIFR--SELGWREFNW 292 Query: 293 HLMAFYPSVCMGKPFIPWTEKIEWNKDSHL-LQAWKQGYTGFPIIDAAMRQLNTIGWMHN 351 HL+ P + + F P EK EW S L AW+QG TG+P++DA MRQL GWMHN Sbjct: 293 HLLYHNPELAT-RSFRPDFEKFEWASLSRKELAAWQQGRTGYPLVDAGMRQLWQTGWMHN 351 Query: 352 RLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNP 411 R+RM ASFLVK+LL DWR+GE++F L+D D A+N WQW A +G D+ PY+RIFNP Sbjct: 352 RVRMAAASFLVKNLLTDWRVGEQWFWDTLVDADAANNPANWQWVAGSGADASPYYRIFNP 411 Query: 412 TIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTL 471 Q K+FD G ++R ++PE+ + + IH P W + D YP P+V+ ++ L Sbjct: 412 VTQSKKFDAGGDYLRRFIPEIAGLEGKAIHEP--WTAEPD---GYPQPLVELPESRERAL 466 Query: 472 NQY 474 + Y Sbjct: 467 DAY 469 >gi|161522875|ref|YP_001585804.1| deoxyribodipyrimidine photo-lyase [Burkholderia multivorans ATCC 17616] gi|189348291|ref|YP_001941487.1| deoxyribodipyrimidine photo lyase [Burkholderia multivorans ATCC 17616] gi|160346428|gb|ABX19512.1| Deoxyribodipyrimidine photo-lyase [Burkholderia multivorans ATCC 17616] gi|189338429|dbj|BAG47497.1| deoxyribodipyrimidine photo lyase [Burkholderia multivorans ATCC 17616] Length = 505 Score = 258 bits (659), Expect = 1e-66, Method: Compositional matrix adjust. Identities = 164/492 (33%), Positives = 246/492 (50%), Gaps = 53/492 (10%) Query: 11 LVWLRNDLRITDNKALYAACHN--SDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 +VW R+D R+ DN AL CH S V+ V++ P + + Q +++ SL ++ Sbjct: 14 VVWFRDDQRLGDNPAL---CHAVASGHPVVCVYVHDPAPSIRRPMGGAQRWWLHESLGKL 70 Query: 69 QKSLSQKG---IVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125 +LS G IV + D E + + + K+ +NR+Y D +++ Sbjct: 71 DDALSALGGSLIVLR-------GDEHEAIRDFAVGIGAAKVVWNRRYSKAHTGTDASIKQ 123 Query: 126 RLQHRVICKS-FDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL 184 L R I S F+ +L P ++L Y+V++ + +A ++ + I Sbjct: 124 DLVGRGIAVSTFNGHLLHEPWTVLTREGLPYQVFSAYWRAACRDDLSPPPPLPAPSRIAF 183 Query: 185 TGPVTPSNIPRFFDYPFQAIDPMFP-----------IGEQNALHILRKFCKEKVYYYVEQ 233 PV + P + P P GE+ A L F + + Y + Sbjct: 184 F-PVPHNVTPHVCTLRALGLQPTAPDWASGLRLTWRCGEEAARQRLDAFLEHSLRDYADM 242 Query: 234 RDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDL-------LIKPKSGAFS-WLNEL 285 RD+PA TS+LSPYL G +S RQ W + L P+SG + +L+E+ Sbjct: 243 RDLPAAHATSRLSPYLRFGNISVRQVWYAASSAASAMQRTRKADLGDPQSGPLNKFLSEI 302 Query: 286 IWREFYRHLMAFYP---SVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQ 342 WREF HL+ +P V + F + + W D + L+ W+ G+TG+P++DA MR+ Sbjct: 303 GWREFSYHLLYHFPPLHQVNFRRQF----DSMPWRDDPNALRKWQTGHTGYPLVDAGMRE 358 Query: 343 LNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDS 402 L GWMHNR+RM+ ASFL K LL+DWR GE +F L+D D ASN WQW + +G D+ Sbjct: 359 LWHTGWMHNRVRMVVASFLSKHLLIDWREGEAWFWDTLVDADEASNPASWQWVSGSGADA 418 Query: 403 VPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND--------LSL 454 PYFRIFNP +QG++FDPQG + RHW+PEL+ + + IHAP W + L Sbjct: 419 APYFRIFNPVLQGQKFDPQGEYTRHWVPELSKMSAEKIHAP--WTASAEQLHDACVSLGR 476 Query: 455 NYPLPIVDHKKA 466 YP PIVDH+ A Sbjct: 477 TYPFPIVDHQAA 488 >gi|229199867|ref|ZP_04326458.1| Deoxyribodipyrimidine photolyase [Bacillus cereus m1293] gi|228583609|gb|EEK41836.1| Deoxyribodipyrimidine photolyase [Bacillus cereus m1293] Length = 476 Score = 258 bits (659), Expect = 1e-66, Method: Compositional matrix adjust. Identities = 159/485 (32%), Positives = 256/485 (52%), Gaps = 32/485 (6%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 +V + D R+ DN AL+ A + + + V+ T I + +++ +++ V++ Sbjct: 6 IVMFQKDFRLYDNPALFEAAQSGEVLPLYVYDET------FSIGSASKWWLHHTIIDVKR 59 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130 L G + + ++ + S Q +T +++N Y+ ++ ++ ++ L+ + Sbjct: 60 QLEALGSTLIIRKGNILEEIL----SLIKQLGITAVYWNICYDPERLQFNQKVKMMLEDK 115 Query: 131 -VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIR----LT 185 + CK F+ +LL P I YKV+TPF A + ++ + V +I+ L Sbjct: 116 GITCKEFNSHLLLEPWIIKKKDNTEYKVFTPFYNAFQKQVISKPISK--VQSIKWGSSLP 173 Query: 186 GPVTPSNIPRFFDYPFQA-IDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244 ++ S + P+ + ++ ++ E+ A +KF K+ Y E RD P S Sbjct: 174 ASLSVSELHLLPTIPWTSHMESIWEPTEEGAYKTFKKFFSSKLVSYSEGRDFPNQNAHSM 233 Query: 245 LSPYLSIGVLSPRQCW----NRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPS 300 L+PYLS G +S + + N+ E+ L + S++ + IWREF +L+ YP Sbjct: 234 LAPYLSFGQISVKVMYHYLINKSNEKQCSLF---EQQVNSFIRQFIWREFSYYLLYHYP- 289 Query: 301 VCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASF 360 + KP E WN + LL+ W++G TG+P IDA MR+L G+MHNR RM ASF Sbjct: 290 FTVYKPLNKNFEHFPWNNEEELLRVWQKGETGYPFIDAGMRELWQTGFMHNRARMAVASF 349 Query: 361 LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDP 420 LVK LL+ W+ G ++FM LLD D+A+N GWQW A +G D+ PYFRIFNP QG++FD Sbjct: 350 LVKHLLIPWQEGAKWFMDTLLDADIANNTMGWQWVAGSGADASPYFRIFNPITQGEKFDK 409 Query: 421 QGTFIRHWLPELNNVPTQYIH----APHSWLDKNDLSLN--YPLPIVDHKKACHHTLNQY 474 G +IR W+PEL ++P +YIH AP L K ++ L YPLP+VDHK A L Y Sbjct: 410 DGEYIRKWVPELRDMPNKYIHKPWEAPEHILQKANIKLGDTYPLPVVDHKAARERALCAY 469 Query: 475 YAAKK 479 + K+ Sbjct: 470 KSMKE 474 >gi|56807956|ref|ZP_00365772.1| COG0415: Deoxyribodipyrimidine photolyase [Streptococcus pyogenes M49 591] Length = 381 Score = 258 bits (659), Expect = 2e-66, Method: Compositional matrix adjust. Identities = 153/387 (39%), Positives = 214/387 (55%), Gaps = 34/387 (8%) Query: 98 CLQQRVTKL-------FYNRQYEINEVRRDKLLEKRLQHRVICKSFDDSVLLPPGSILNH 150 C +Q +T+L F + +R K + ++ + ++ D L I+N Sbjct: 8 CFEQLLTQLKDWTDVYFNYDESGYGRLRDQKAAQFFKKNGIAVHTYQDHYLHGSQEIINQ 67 Query: 151 ALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPSNIPR----FFDYPFQAIDP 206 + Q YKV+TP+ + QN + + + R TP ++ R F D +Q + Sbjct: 68 SGQPYKVFTPYYRXW-QNYPKETPIKVELSQGRWLNLETPDDVLRTVESFKDEKYQDVAT 126 Query: 207 MFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEE 266 +Q L +F ++++ Y RD PA GTS+LSP+L IG + R ++ +++ Sbjct: 127 FDEASKQ-----LNRFIQDQLAAYHANRDFPAQLGTSRLSPFLRIGAIGIRTVYHAVRQ- 180 Query: 267 FVDLLIKPKS-GAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQA 325 P S G ++L EL WR+FY + YP +P +IEW + Q Sbjct: 181 ------APNSLGQATFLKELAWRDFYNMVYVAYPDQKT-QPIQKAFSQIEWVNNPDWFQL 233 Query: 326 WKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDL 385 WK+G TG+PI+DAAM QL GWMHNRLRMI ASFL KDLL DWR+GE+YF QL+D D Sbjct: 234 WKEGKTGYPIVDAAMLQLQKTGWMHNRLRMIVASFLTKDLLCDWRLGEQYFQQQLIDYDA 293 Query: 386 ASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHS 445 ASN GGWQWAASTG D+VPYFRIFNP QGKRFDP+G FI+ +LP+L +VP +Y+H P Sbjct: 294 ASNIGGWQWAASTGTDAVPYFRIFNPVTQGKRFDPKGEFIKAYLPQLEHVPEKYLHEPWK 353 Query: 446 WLDKN-------DLSLNYPLPIVDHKK 465 + KN + +Y PIVDH K Sbjct: 354 -MPKNLQESVSCIIGTDYAQPIVDHAK 379 >gi|323480758|gb|ADX80197.1| deoxyribodipyrimidine photo-lyase [Enterococcus faecalis 62] Length = 477 Score = 258 bits (658), Expect = 2e-66, Method: Compositional matrix adjust. Identities = 174/489 (35%), Positives = 251/489 (51%), Gaps = 46/489 (9%) Query: 11 LVWLRNDLRITDNKALYAACHNSDA-KVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69 ++W R DLR+ DNKAL A NS A ++I +F P+Q+ Q SA + F +ASL ++ Sbjct: 4 VMWFRRDLRLQDNKALAHALQNSAADELILLFQMNPQQFIQE--SANHNAF-FASLASLK 60 Query: 70 KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRV----TKLFYNRQYEINEVRRDKLLEK 125 + + Q+ + Q E LD + +R +++N +RD+ + Sbjct: 61 ERIDQEAHL----QIM----VGEPLDLFSRLKRKLPDWQAIYFNEDTCGFGAKRDQQAMR 112 Query: 126 RLQHRVICK-SFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIR- 183 + I SF D+ L I + Y+V+TP+ N + + P+P Sbjct: 113 FFEENNIQSFSFQDAYLHGSEEIKKNDGSKYQVFTPYY-----NKWKEAPKETPIPVSYT 167 Query: 184 ----LTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAI 239 + + P + + + + +GE+ A L F +K+ Y +RD P Sbjct: 168 AEKIFSACLFPEEEAAYREQIARIPLTHYSVGEETARRRLNTFIDQKLQSYENKRDFPYQ 227 Query: 240 QGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYP 299 TS LS +L G LS R W L + ++ EL WR+FY + + +P Sbjct: 228 DQTSHLSTFLRTGELSIRTIWQELAS------VPSSLSKETFKKELAWRDFYNMIYSAFP 281 Query: 300 ---SVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMI 356 + + F I+W D + W++G TG+PIIDAAMRQLN GWMHNRLRMI Sbjct: 282 QQKEEAIQEKF----RYIQWINDPEMFVKWQKGETGYPIIDAAMRQLNQTGWMHNRLRMI 337 Query: 357 TASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGK 416 TASFLVK+L +DWR GE+YF L+D D A+N GGWQWAASTG D+VPYFRIFNP IQ K Sbjct: 338 TASFLVKNLHIDWRWGEKYFQKMLIDYDAANNIGGWQWAASTGTDAVPYFRIFNPIIQSK 397 Query: 417 RFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND------LSLNYPLPIVDHKKACHHT 470 +FD G FI+ ++PEL VP +YIH P+ + L NYP PIV++ + T Sbjct: 398 KFDNDGQFIKKYVPELKQVPQKYIHQPNLMNEALQTQYHVHLGENYPKPIVNYASSKKQT 457 Query: 471 LNQYYAAKK 479 L Y A+K+ Sbjct: 458 LFLYEASKE 466 >gi|229075148|ref|ZP_04208142.1| Deoxyribodipyrimidine photolyase [Bacillus cereus Rock4-18] gi|228707925|gb|EEL60104.1| Deoxyribodipyrimidine photolyase [Bacillus cereus Rock4-18] Length = 476 Score = 258 bits (658), Expect = 2e-66, Method: Compositional matrix adjust. Identities = 163/490 (33%), Positives = 254/490 (51%), Gaps = 42/490 (8%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 +V + D R+ DN AL+ A + + V+ V++ + + +++ +++ V+K Sbjct: 6 IVMFQKDFRLYDNPALFEAAQSGE--VVPVYVHD----ETFPMGSASKWWLHHAIIDVKK 59 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130 L G + ++ E + S Q +T +++N Y+ + ++ ++ ++ L+ + Sbjct: 60 QLETLGSTLIIRK----GNTQEEIFSLIEQLGITAVYWNICYDPDRLQSNQKMKMMLEDK 115 Query: 131 -VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189 ++CK F+ +LL P I YKV+TPF A + ++ P P R+ Sbjct: 116 GIVCKEFNSHLLLEPWIIKKKDNTEYKVFTPFYNAFQKQVI-------PKPISRVQSIKW 168 Query: 190 PSNIPRFFDYPFQAIDPMFP----------IGEQNALHILRKFCKEKVYYYVEQRDIPAI 239 +++P + P P E+ A +KF K+ Y E RD P Sbjct: 169 GNSLPASLFVSELHLLPTIPWTSHMEVIWDPTEEGAYKTFKKFFSSKLVSYSEGRDFPNQ 228 Query: 240 QGTSQLSPYLSIGVLSPRQCW----NRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLM 295 S L+PYLS G +S + + N+ E L K + S++ +LIWREF +L+ Sbjct: 229 NVHSMLAPYLSFGQISVKLMFHYLINKSTERQCSLFEKQVN---SFIRQLIWREFSYYLL 285 Query: 296 AFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRM 355 YP + KP E W+K+ LL+ W++G TG+P IDA MR+L G+MHNR RM Sbjct: 286 YHYP-FTVYKPLNKSFENFPWDKEEELLRVWQKGKTGYPFIDAGMRELWQTGFMHNRARM 344 Query: 356 ITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQG 415 ASFLVK LL+ W+ G ++FM LLD D+A+N GWQW A +G D+ PYFRIFNP QG Sbjct: 345 AVASFLVKHLLIPWQEGAKWFMDTLLDADIANNTMGWQWVAGSGADASPYFRIFNPITQG 404 Query: 416 KRFDPQGTFIRHWLPELNNVPTQYIH----APHSWLDKNDLSLN--YPLPIVDHKKACHH 469 ++FD G +IR W+PEL ++P +YIH AP L K ++ L YP PIVDHK A Sbjct: 405 EKFDKNGEYIRRWVPELRDIPNKYIHKPWEAPEHILQKANIQLGHTYPFPIVDHKAARER 464 Query: 470 TLNQYYAAKK 479 L Y + K+ Sbjct: 465 ALCAYKSMKE 474 >gi|114707205|ref|ZP_01440103.1| DNA photolyase [Fulvimarina pelagi HTCC2506] gi|114537401|gb|EAU40527.1| DNA photolyase [Fulvimarina pelagi HTCC2506] Length = 492 Score = 258 bits (658), Expect = 2e-66, Method: Compositional matrix adjust. Identities = 158/484 (32%), Positives = 236/484 (48%), Gaps = 28/484 (5%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 +VWLR+DLR+ DN AL A ++ ++ + + E + +++ SL Sbjct: 20 VVWLRDDLRLDDNPALALAAE-TNRPIVPLVVLDEESDGVRALGGAHKWWLHHSLESFAS 78 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130 SL KG + D ++ ++ + + LF+NR+Y+ D + + L + Sbjct: 79 SLRGKGSRLTLRRGKAKDQVLDVIE----KTGASALFFNRRYDQASRAVDDAIGEALGDQ 134 Query: 131 VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTP 190 V + F ++L P ++ + YKV+TPF + + ++ R P L P T Sbjct: 135 VSVERFTANLLHDPENVETTSGGYYKVFTPF----WRKVSESGPRDPIDPPDGLKQPDTF 190 Query: 191 SNIPRFFDYPFQAIDP--------MFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGT 242 D+ P + GE+ A FC + + Y + R+ P T Sbjct: 191 PQSDDLEDWELLPTKPDWSGGIADFWTPGEKAAHDRFETFCDDLLSDYHKGRERPYADDT 250 Query: 243 SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVC 302 S++SPYL G +SP + W+ + P ++L EL+WR+F HL+ F+ Sbjct: 251 SRMSPYLRWGEISPYRLWHTAQAYANRRKTVPDEAIRTFLQELVWRDFNYHLL-FHFGPL 309 Query: 303 MGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLV 362 K F + W L+AW+ G TG+PI+DA MRQL GWMHNR+RMI SFL Sbjct: 310 ADKNFNDRFDNFSWRSSKKDLKAWQNGLTGYPIVDAGMRQLWKTGWMHNRVRMIVGSFLT 369 Query: 363 KDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQG 422 KDLL+DWR GE +F L+DGD+ASN WQW G D+ P+FRIFNP Q +RFD G Sbjct: 370 KDLLIDWRDGERWFWDTLVDGDIASNTAQWQWIGGAGADAQPFFRIFNPITQSERFDKNG 429 Query: 423 TFIRHWLPELNNVPTQYIHAPHSWLDKND--------LSLNYPLPIVDHKKACHHTLNQY 474 +IR ++PEL +P ++IHAP W D L YP P+VDH +A L+ Y Sbjct: 430 AYIRQFVPELKEMPDKHIHAP--WKADKDVLEKAGVKLGETYPEPLVDHSEARDRALSAY 487 Query: 475 YAAK 478 K Sbjct: 488 DEVK 491 >gi|238502227|ref|XP_002382347.1| deoxyribodipyrimidine photo-lyase Phr1, putative [Aspergillus flavus NRRL3357] gi|220691157|gb|EED47505.1| deoxyribodipyrimidine photo-lyase Phr1, putative [Aspergillus flavus NRRL3357] Length = 572 Score = 258 bits (658), Expect = 2e-66, Method: Compositional matrix adjust. Identities = 151/422 (35%), Positives = 229/422 (54%), Gaps = 20/422 (4%) Query: 6 AMSVHLVWLRNDLRITDNKAL---YAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIY 62 A VH W ++DLR+ DN+AL Y +IA++I +PE H S + Sbjct: 130 AAVVH--WFKSDLRLHDNRALRKAYEVAREHSIPLIALYILSPEDLTAHLSSPARVDLTL 187 Query: 63 ASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD-K 121 +L Q++ L + I + D + + C + LF N +YE++E+RR+ K Sbjct: 188 RTLEQLKLDLGELDIPLHMETQESRRDIPQRIIHLCQEWGANHLFANIEYEVDELRREAK 247 Query: 122 LLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKA----LIQN----LVQAD 173 L+ +++ + D+ ++PPG + + + Y VY+P+ ++ L+ N V + Sbjct: 248 LVRLCVENGIAFDVLHDTCVVPPGLLSSQQGKQYAVYSPWFRSWQMFLMDNPEHLEVSEE 307 Query: 174 LRSLPVPAIRLTGPVTPSNIP------RFFDYPFQAIDPMFPIGEQNALHILRKFCKEKV 227 S P A ++ + S +P R D + ++P GE L L F +EK Sbjct: 308 PGSNPGNARKVFKDLFASEVPGAPNNKRLSDEEREHFRQLYPAGEHEGLDRLESFLEEKA 367 Query: 228 YYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIW 287 Y + R+ + Q TS LSPY + G LS R + K+ + L + + G SW++E+ W Sbjct: 368 TAYDDMRNSLSKQTTSVLSPYFASGSLSARTAVAKAKKANKNQLDRNELGFVSWISEVAW 427 Query: 288 REFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIG 347 R+FY+H++ +P +CM K F P +EW ++ +AW +G TGFPI+DAAMRQ+ + Sbjct: 428 RDFYKHVLVRWPFICMNKCFKPEFTDLEWEYNTDYFKAWCEGRTGFPIVDAAMRQMKSSA 487 Query: 348 WMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFR 407 WMHNR RMI ASFL KDLL+DWR GE YFM L+DGD ASN+GGW + +STG D PYFR Sbjct: 488 WMHNRSRMIVASFLSKDLLIDWRRGERYFMEHLIDGDFASNHGGWGFGSSTGVDPQPYFR 547 Query: 408 IF 409 IF Sbjct: 548 IF 549 >gi|33864755|ref|NP_896314.1| deoxyribodipyrimidine photolyase [Synechococcus sp. WH 8102] gi|33632278|emb|CAE06734.1| probable deoxyribodipyrimidine photolyase [Synechococcus sp. WH 8102] Length = 477 Score = 258 bits (658), Expect = 2e-66, Method: Compositional matrix adjust. Identities = 170/468 (36%), Positives = 239/468 (51%), Gaps = 26/468 (5%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPE--QWRQHGISARQSH--FIYASLL 66 L W R DLR+TDN L AA S A V V++ P+ +H + + F+ SL+ Sbjct: 7 LFWHRRDLRLTDNLGLAAAAAISPA-VTGVYVLDPQVISPSEHLLPMAPARLWFLIESLI 65 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 ++Q+ G + D ++ L + + +NR E RD+ + +R Sbjct: 66 ELQQRWRDAGSRLLVVE----GDPVQLLPQLAERIAAEAVVWNRDVEPYARERDRQVAQR 121 Query: 127 LQHRVICKSFD-DSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPA--IR 183 LQ D D +L+ P + Y+VY PF + + ++P PA + Sbjct: 122 LQADGRKVVVDWDQLLIAPELLKTGGGDPYRVYGPFLRNWRGQVQAKQPVTVPAPAGLVD 181 Query: 184 LTGPVTPSNIP---RFFDYPFQAID--PMFPIGEQNALHILRKFCKEKVYYYVEQRDIPA 238 L PS P R + F+ + P P GE A+ L FC ++ Y R+ P Sbjct: 182 LDPAAVPSGEPLMARRDSHGFKGTELCPCRP-GEAAAMQQLTSFCDGALFGYEPDRNFPG 240 Query: 239 IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFS-WLNELIWREFYRHLMAF 297 + GTS LS LS+G LSPRQ W+ +E + + A + W EL WREFY+ + Sbjct: 241 VVGTSYLSAALSVGTLSPRQAWSAAQEAREQARSEEQLHAIAVWEQELCWREFYQQALFH 300 Query: 298 YPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMIT 357 +P + G P+ + W + W++G TG PIIDAAMRQLN GWMHNR RMI Sbjct: 301 FPELSDG-PYREQWRRFPWENNEDWFDFWREGQTGMPIIDAAMRQLNQTGWMHNRCRMIV 359 Query: 358 ASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKR 417 AS+LVKDL+ DWR GE FM +DGDLA+NNGGWQW+AS+G D P RIFNP Q + Sbjct: 360 ASYLVKDLICDWRWGERAFMELEVDGDLAANNGGWQWSASSGMDPKP-LRIFNPATQASK 418 Query: 418 FDPQGTFIRHWLPELNNVPTQ-YIHAPHSWLDKNDLSLNYPLPIVDHK 464 FD G +IR W+PEL +V T+ + L++ D YP P+V+HK Sbjct: 419 FDAAGDYIRQWVPELRHVNTKDLLSGEIGALERRD----YPEPLVNHK 462 >gi|238028072|ref|YP_002912303.1| Deoxyribodipyrimidine photolyase [Burkholderia glumae BGR1] gi|237877266|gb|ACR29599.1| Deoxyribodipyrimidine photolyase [Burkholderia glumae BGR1] Length = 489 Score = 258 bits (658), Expect = 2e-66, Method: Compositional matrix adjust. Identities = 162/501 (32%), Positives = 248/501 (49%), Gaps = 36/501 (7%) Query: 1 MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHF 60 + A + LVW R+DLR+TDN AL A S ++ V++ + R G + R + Sbjct: 3 LSADSQAQPALVWFRDDLRVTDNPALARAAE-SGRPLVCVYVFERDGTRPLGGAVR--WW 59 Query: 61 IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120 + +L + L+ +G + D E + + + +++NR+Y+ D Sbjct: 60 LDGALRSLDAKLAAQGGGLVVLEG----DERETIAALAGELGAGAVYWNRRYDGLARETD 115 Query: 121 KLLEKRLQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPF-RKALIQNLVQADLRS-- 176 L++ L+ I +SF+ ++L P I + ++V+T + R A + A L Sbjct: 116 AALKRSLKEAGIEVESFNGALLHEPWEIRTGSGGAFQVFTAYWRAARAAGELPAPLAEPA 175 Query: 177 ------LPVPAIRLTGPVTPSNI----PRFFDYPFQAIDPMFPIGEQNALHILRKFCKEK 226 LP R + + P + +A +P E+ L L F ++ Sbjct: 176 KWRFHRLPEALARRATRIDALGLLPVRPDWAGGLREAWEPS----EEGGLARLEAFLDKQ 231 Query: 227 VYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELI 286 + Y + RD P TS+LSPYL G LS RQ W+ + + + +L+EL Sbjct: 232 IRGYGDARDRPDRPATSRLSPYLRFGQLSARQVWHAAQAAGREGGAAVAADIEKFLSELG 291 Query: 287 WREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTI 346 WREF L+ +P + M + + + + W D AW +G TG+P++DA MR+L Sbjct: 292 WREFNTSLLYHFPELPM-RNYRDRFDAMPWRSDEAAFAAWCRGRTGYPLVDAGMRELWAT 350 Query: 347 GWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYF 406 GWMHNR+RM+TASFL+K LL+DWR GE +F L+D D+A+N+ WQW A +G D+ PYF Sbjct: 351 GWMHNRVRMVTASFLIKHLLIDWRAGERWFWDTLVDADIANNSANWQWVAGSGADAAPYF 410 Query: 407 RIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKN--------DLSLNYPL 458 RIFNP +QG++FDP G ++R W+PEL +P IH P W K L YP Sbjct: 411 RIFNPVMQGRKFDPDGAYVRRWVPELAGLPADAIHEP--WRAKPVVLEAAGVVLGRTYPA 468 Query: 459 PIVDHKKACHHTLNQYYAAKK 479 PIVDH A L A K+ Sbjct: 469 PIVDHDAARKRALGALEATKR 489 >gi|119715025|ref|YP_921990.1| deoxyribodipyrimidine photo-lyase type I [Nocardioides sp. JS614] gi|119535686|gb|ABL80303.1| deoxyribodipyrimidine photo-lyase type I [Nocardioides sp. JS614] Length = 453 Score = 258 bits (658), Expect = 2e-66, Method: Compositional matrix adjust. Identities = 157/471 (33%), Positives = 231/471 (49%), Gaps = 36/471 (7%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 ++W R DLR+ DN AL A +D V+ +F+ P W G + R ++ ASL + Sbjct: 8 VLWFRRDLRLADNPALVEAA--ADGPVLPLFVLDPVLWGPAGAARRA--YLGASLRALDA 63 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130 SL ++G + D + ++ + RRD +E+ L Sbjct: 64 SLRERGTRLSVVRG----DPARLVPRAARAVGAARVHVAADFGPYGSRRDGAVEQALTGA 119 Query: 131 -VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189 + PG + N A Y+V+TPF +A ++ + PV TG + Sbjct: 120 GAELVRTGSPYAVAPGRVTNTAGAPYRVFTPFHRAWAEHGWRG-----PVGVPEGTGWL- 173 Query: 190 PSNIPRFFDYPFQAIDPMFPIG------EQNALHILRKFCKEKVYYYVEQRDIPAIQGTS 243 R + + DP P G + A ++V Y E RD PA+ GTS Sbjct: 174 -----RLAEGTAEIPDPALPDGLTLPAAGEAAARRRWAEFLDRVDEYAEDRDRPAVDGTS 228 Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCM 303 Q+S +L G + PR DL + +GA ++ EL WREFY ++ P Sbjct: 229 QMSAHLKWGEIHPRTM-------LADLARRRGAGAATYRKELAWREFYADVLHARPETAR 281 Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363 + P ++ +++ L AW+ G TGF ++DA MRQL GWMHNR+RMITASFLVK Sbjct: 282 -QYLRPEFARMRYDEPGEHLDAWRHGRTGFSVVDAGMRQLRATGWMHNRVRMITASFLVK 340 Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423 DL ++W++G +F+ L+DGDLASN GWQW A G D+ PYFR+FNPT QG+RFDP+G Sbjct: 341 DLHLEWQLGARHFLRWLVDGDLASNQHGWQWTAGCGTDAAPYFRVFNPTAQGRRFDPRGE 400 Query: 424 FIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQY 474 ++R W+PEL + + PH ++ YP PIVDH L ++ Sbjct: 401 YVRRWVPELAD--PDVVADPHDPSPSERQAVGYPEPIVDHAAERREALGRW 449 >gi|301167819|emb|CBW27403.1| putative deoxyribodipyrimidine photolyase [Bacteriovorax marinus SJ] Length = 434 Score = 257 bits (656), Expect = 3e-66, Method: Compositional matrix adjust. Identities = 167/473 (35%), Positives = 229/473 (48%), Gaps = 48/473 (10%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 V + W R DLR+ DN LY A NS V+ +FI + + FI+ L + Sbjct: 8 VSIFWFRRDLRVEDNIGLYHAL-NSSFPVLPIFIFDKNILNKLERDDSRVSFIHECLQNL 66 Query: 69 QKSLSQ-KGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127 + + G + ++ + E +S+ +Q+ ++ N YE + RDK +E L Sbjct: 67 SEKFRKYDGDLLTFYNSPK-NAWKEIFESFDVQE----VYTNEDYEPYALSRDKSIEDYL 121 Query: 128 QHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 + I +S+ D + IL Y VYTP++ ++ L +DL S+ Sbjct: 122 TRKGIKFQSYKDQCIFSKFDILKKDGTPYTVYTPYKNKWLETLQPSDLASIKSEKNLSKI 181 Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246 S I F FP I Y E RD+P+I GTS L Sbjct: 182 YKFKSEIHSLMSLGFTKSHISFPKRIIKKKIITN---------YHETRDLPSINGTSLLG 232 Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP 306 +L G + PR+ L +WLNELIWREF+ ++ +P V + P Sbjct: 233 VHLRFGTIGPRK-----------LASIAYHTNKTWLNELIWREFFSQILFHFPHV-VNAP 280 Query: 307 FIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLL 366 F E IEW + + W +G TGFP++DA MR+LN G MHNR+RM+ ASFLVKDLL Sbjct: 281 FREKYESIEWRNNKEEFKLWCEGRTGFPLVDAGMRELNQTGHMHNRVRMLVASFLVKDLL 340 Query: 367 VDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIR 426 +DWR GE+YF +LLD DLASNNG WQWAA TG D+ PYFRIFNPT Q K+FDP +++ Sbjct: 341 IDWRWGEKYFAKKLLDFDLASNNGNWQWAAGTGCDAAPYFRIFNPTTQIKKFDPDLIYVK 400 Query: 427 HWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479 W+PE S NY IVDHK+A H + Y A K Sbjct: 401 KWVPEYG-------------------SDNYTEEIVDHKEAYHRAIFTYNKALK 434 >gi|312796611|ref|YP_004029533.1| Deoxyribodipyrimidine photolyase [Burkholderia rhizoxinica HKI 454] gi|312168386|emb|CBW75389.1| Deoxyribodipyrimidine photolyase (EC 4.1.99.3) [Burkholderia rhizoxinica HKI 454] Length = 522 Score = 257 bits (656), Expect = 3e-66, Method: Compositional matrix adjust. Identities = 166/492 (33%), Positives = 250/492 (50%), Gaps = 40/492 (8%) Query: 11 LVWLRNDLRITDNKAL-YAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69 +VW R+D R+ DN AL YA + V P R G + R +++ SL + Sbjct: 24 VVWFRDDQRLADNPALEYATATGHPVVCVYVHDPAPRNTRPPGAAGRW--WLHESLRALN 81 Query: 70 KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH 129 +L G S + ++++ + K+ +NR+Y + D ++ L+ Sbjct: 82 AALVALGGELTVLHGSE----SQAIEAFAVAIGAIKVCWNRRYSAPQRETDTAIKTALKE 137 Query: 130 RVICK-SFDDSVLLPPGSILNHALQMYKVYTPF-RKALIQNLVQAD------LRSLPVP- 180 R I +F+ +L P ++ + ++V++ + R A Q +A + PVP Sbjct: 138 RGIAVFTFNGHLLREPWAVATRDGRPFQVFSAYWRAARHQYSPEAPQPAPQRINFFPVPD 197 Query: 181 ----AIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDI 236 A R+ + PR D+ + + GEQ L F + Y RD+ Sbjct: 198 NIGVAARVENLSALALQPRTPDWA-SGLRETWQCGEQAGQTQLDAFLANALTRYASGRDV 256 Query: 237 PAIQGTSQLSPYLSIGVLSPRQCWN------RLKEEFVDL--LIKPKSGAFSWLNELIWR 288 PA+Q TS+LSPYL G LS RQ W+ R+ D SG +L+EL WR Sbjct: 257 PAMQATSRLSPYLRFGNLSARQVWHAALSAARVGRHCGDARRTCTASSGVDKFLDELGWR 316 Query: 289 EFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGW 348 EF +L+ ++ + F + + W D+ L+AW+ G TG+P++DA MR+L GW Sbjct: 317 EFSYYLL-YHCAPLHQVNFKRQFDTMPWRADTADLRAWQHGRTGYPLVDAGMRELWHTGW 375 Query: 349 MHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRI 408 MHNR+RM+TASFLVK LL++WR GE +F L+D D ASN WQW A +G D+ PYFRI Sbjct: 376 MHNRVRMVTASFLVKHLLINWREGEAWFWDTLVDADEASNPANWQWVAGSGADAAPYFRI 435 Query: 409 FNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND--------LSLNYPLPI 460 FNP +QG++FDPQG ++R W+PEL VP+ +HAP WL + L +YPLP+ Sbjct: 436 FNPVLQGQKFDPQGAYVRRWVPELARVPSGCVHAP--WLAQPAQLASASVRLGQDYPLPV 493 Query: 461 VDHKKACHHTLN 472 V H++A L Sbjct: 494 VPHQQARERALK 505 >gi|225865104|ref|YP_002750482.1| deoxyribodipyrimidine photolyase family protein [Bacillus cereus 03BB102] gi|225786063|gb|ACO26280.1| deoxyribodipyrimidine photo-lyase [Bacillus cereus 03BB102] Length = 476 Score = 257 bits (656), Expect = 3e-66, Method: Compositional matrix adjust. Identities = 162/499 (32%), Positives = 257/499 (51%), Gaps = 60/499 (12%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 +V + D R+ DN AL+ A + + V+ V++ + + +++ +++ VQK Sbjct: 6 IVIFQKDFRLYDNPALFEAAQSGE--VVPVYVHD----ETFSMGSASKWWLHHAIIDVQK 59 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130 L G + + ++ + ++ Q +T +++N Y+ ++++ ++ ++ L+ + Sbjct: 60 QLEALGSTLIIRKGNTQEEILSLIE----QLDITAVYWNICYDPDKLQSNQKMKIVLEGK 115 Query: 131 -VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADL---------RSLP-- 178 ++CK F+ +LL P I YKV+TPF A + ++ + SLP Sbjct: 116 GIVCKEFNSHLLLEPWIIKKKDNTEYKVFTPFYNAFQKQVIPKPISKVQRIKGGNSLPAS 175 Query: 179 --------VPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYY 230 +P IR T I+ ++ E+ A +KF K+ +Y Sbjct: 176 LSVSELHLLPTIRWTS----------------HIELIWEPTEEGAYKTCKKFFSSKLAFY 219 Query: 231 VEQRDIPAIQGTSQLSPYLSIGVLSPRQCW----NRLKEEFVDLLIKPKSGAFSWLNELI 286 E RD P S L+PYLS G +S + + N+ E L K + S++ + I Sbjct: 220 CEGRDFPNENAHSMLAPYLSFGQISVKWMYHYLINKSTERQCSLFEKQVN---SFIRQFI 276 Query: 287 WREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTI 346 WREF +L+ YP + KP E WNK+ LL W++G TG+P IDA MR+L Sbjct: 277 WREFSYYLLYHYP-FTVYKPLNKSFEHFPWNKEDELLTVWQKGETGYPFIDAGMRELWQT 335 Query: 347 GWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYF 406 G+MHNR RM ASFLVK LL+ W+ G ++FM LL D+A+N GWQW A +G D+ PYF Sbjct: 336 GFMHNRARMAVASFLVKHLLIPWQEGAKWFMDTLLAADIANNTMGWQWVAGSGADASPYF 395 Query: 407 RIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIH----APHSWLDKNDLSLN--YPLPI 460 RIFNP QG++FD G +IR W+PEL ++P +YIH AP L K ++ + YPLP+ Sbjct: 396 RIFNPITQGEKFDKDGEYIRKWVPELRDMPNKYIHKPWEAPEHILQKANIQIGHTYPLPV 455 Query: 461 VDHKKACHHTLNQYYAAKK 479 VDHK A L Y + K+ Sbjct: 456 VDHKAARERALCAYKSMKE 474 >gi|90419365|ref|ZP_01227275.1| putative deoxyribodipyrimidine photolyase [Aurantimonas manganoxydans SI85-9A1] gi|90336302|gb|EAS50043.1| putative deoxyribodipyrimidine photolyase [Aurantimonas manganoxydans SI85-9A1] Length = 483 Score = 257 bits (656), Expect = 4e-66, Method: Compositional matrix adjust. Identities = 161/494 (32%), Positives = 236/494 (47%), Gaps = 28/494 (5%) Query: 1 MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHF 60 M T+ +VWLR+DLR+ DN AL A +S V+ + + E + + Sbjct: 1 MTQTSQSEPIVVWLRDDLRLDDNPALAEAA-DSGRPVVPLVVLDEESDGVRSLGGTHKWW 59 Query: 61 IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120 ++ SL K L+ KG + + ++ ++S T L NR+Y+ D Sbjct: 60 LHHSLQCFGKDLADKGAPLILRRGKASEHVVDIVESTG----ATTLLMNRRYDQASRAVD 115 Query: 121 KLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVP 180 +E L V + F ++L P + YKVYTPF K NL + + R P Sbjct: 116 DAVEAALGSDVEVQRFTANILHDPDKVRTKTGGWYKVYTPFWK----NLAEDEPRDPIDP 171 Query: 181 AIRLTGPVTPSNIPRFFDYPF--------QAIDPMFPIGEQNALHILRKFCKEKVYYYVE 232 +L R ++ I + +GE A +F E + Y + Sbjct: 172 PDKLASLDDQPRSDRLEEWDLLPTRPDWSGGIAAFWKVGEAAAHERFEEFSDEWLNDYPD 231 Query: 233 QRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYR 292 RD P TS++SP+L G +SP + W+ + P ++ EL+WR+F Sbjct: 232 GRDRPGDDATSRMSPHLRWGEISPYRLWHMAEACANRRKTIPGDALKTFKKELVWRDFNY 291 Query: 293 HLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNR 352 HL+ + + + + + W L+AW++G TG+PI+DA MRQL GWMHNR Sbjct: 292 HLLHNFGPLAT-QNYNDRFDAFPWRSAKSELRAWQKGLTGYPIVDAGMRQLWECGWMHNR 350 Query: 353 LRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPT 412 +RMI SFL KDLL+DWR GE +F L+DGD+ASN WQW +G D+ PYFR+FNP Sbjct: 351 VRMIVGSFLTKDLLIDWREGERWFWDTLVDGDIASNTAQWQWIGGSGADAQPYFRVFNPV 410 Query: 413 IQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND--------LSLNYPLPIVDHK 464 Q +RFD G +IR ++PEL ++P + +HAP W D L YP PIVDH Sbjct: 411 TQSQRFDGDGDYIRRFVPELADLPDKVLHAP--WEADADTLAEAGVELGKTYPKPIVDHG 468 Query: 465 KACHHTLNQYYAAK 478 A L+ Y K Sbjct: 469 TARKRALDAYGEVK 482 >gi|78211765|ref|YP_380544.1| deoxyribodipyrimidine photo-lyase type I [Synechococcus sp. CC9605] gi|78196224|gb|ABB33989.1| Deoxyribodipyrimidine photolyase [Synechococcus sp. CC9605] Length = 477 Score = 257 bits (656), Expect = 4e-66, Method: Compositional matrix adjust. Identities = 172/470 (36%), Positives = 232/470 (49%), Gaps = 30/470 (6%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSH----FIYASLL 66 L W R DLR+ DN L A S A V V++ P + F+ SL+ Sbjct: 7 LFWHRRDLRLADNLGLVVAAQISPA-VTGVYVLDPAVINPPPELPPMAPARLWFLIESLV 65 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 ++Q+ + G + D + L Q + +NR E +RD+ + K Sbjct: 66 ELQQRWREAGSRLLVVE----GDPVAVLPQVAQQISAEAVVWNRDVEPYARKRDRQVAKT 121 Query: 127 LQ---HRVICKSFDDSVLLPPGSILNHALQMYKVYTPF-RKALIQNLVQADLR-SLPVPA 181 LQ RV+ D +L+ P + A Y+VY PF R Q L Q + P Sbjct: 122 LQADGRRVVADW--DQLLIAPELLKTGAGDPYRVYGPFLRNWRGQVLAQKPATVAAPTGL 179 Query: 182 IRLTGPVTPSNIP-----RFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDI 236 + L + P+ P + I P P GE AL L FC + Y R+ Sbjct: 180 VDLPPELMPAGDPLPALRESHGFQGSEICPCRP-GEAAALEQLTTFCNGPLLGYEPDRNF 238 Query: 237 PAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFS-WLNELIWREFYRHLM 295 P GTS LS LS+G LSPRQ W ++ + + A + W EL WREFY+ + Sbjct: 239 PGTAGTSYLSAALSVGTLSPRQAWCAAQDSREQARSEEQLQAIAVWEQELGWREFYQQAL 298 Query: 296 AFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRM 355 ++P + G P+ + W + WK+G TG PIIDAAMRQLN GWMHNR RM Sbjct: 299 FYFPELADG-PYREQWRRFPWENNEDWFDFWKEGQTGMPIIDAAMRQLNQTGWMHNRCRM 357 Query: 356 ITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQG 415 I AS+LVKDL+ DWR GE FM +DGDLA+NNGGWQW+AS+G D+ P RIFNP Q Sbjct: 358 IVASYLVKDLICDWRWGERAFMELEVDGDLAANNGGWQWSASSGMDTKP-LRIFNPATQA 416 Query: 416 KRFDPQGTFIRHWLPELNNVPTQ-YIHAPHSWLDKNDLSLNYPLPIVDHK 464 +FD G +IR W+PEL +V T+ + L++ D YP P+VDHK Sbjct: 417 SKFDSAGDYIRRWVPELRHVNTKDLLSGEIGALERRD----YPEPLVDHK 462 >gi|315150502|gb|EFT94518.1| FAD binding domain of DNA photolyase [Enterococcus faecalis TX0012] Length = 477 Score = 256 bits (655), Expect = 4e-66, Method: Compositional matrix adjust. Identities = 177/490 (36%), Positives = 253/490 (51%), Gaps = 48/490 (9%) Query: 11 LVWLRNDLRITDNKALYAACHNSDA-KVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69 ++W R DLR+ DNKAL A NS A ++I +F P+Q+ Q SA + F +ASL + Sbjct: 4 VMWFRRDLRLQDNKALAHALQNSAADELILLFQMNPQQFIQE--SANHNAF-FASLASFK 60 Query: 70 KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRV----TKLFYNRQYEINEVRRDKLLEK 125 + + Q+ + Q E LD + +R +++N +RD+ + Sbjct: 61 ERIDQEAHL----QIM----VGEPLDLFSRLKRKLPDWQAIYFNEDTCGFGAKRDQQAMR 112 Query: 126 RLQHRVICK-SFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIR- 183 + I SF D+ L I + Y+V+TP+ N + + P+P Sbjct: 113 FFEENNIQSFSFQDAYLHGSEEIKKNDGSKYQVFTPYY-----NKWKEAPKETPIPVSYT 167 Query: 184 ----LTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAI 239 + + P + + + + +GE+ A L F +K+ Y RD P Sbjct: 168 AEKIFSACLFPEEEAAYGEQIARIPLTHYSVGEETARRRLNTFIDQKLQSYENNRDFPYQ 227 Query: 240 QGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKS-GAFSWLNELIWREFYRHLMAFY 298 TS LS +L G LS R +++E L P S ++ EL WR+FY + + + Sbjct: 228 DQTSHLSTFLRTGELSIR----TIRQE---LASAPSSLSKETFKKELAWRDFYNMIYSAF 280 Query: 299 P---SVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRM 355 P + + F I+W D + W++G TG+PIIDAAMRQLN GWMHNRLRM Sbjct: 281 PQQKEEAIQEKF----RYIQWTNDPEMFAKWQKGETGYPIIDAAMRQLNQTGWMHNRLRM 336 Query: 356 ITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQG 415 ITASFLVK+L +DWR GE+YF L+D D A+N GGWQWAASTG D+VPYFRIFNP IQ Sbjct: 337 ITASFLVKNLHIDWRWGEKYFQKMLIDYDAANNIGGWQWAASTGTDAVPYFRIFNPIIQS 396 Query: 416 KRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND------LSLNYPLPIVDHKKACHH 469 K+FD G FI+ ++PEL VP +YIH P+ + L NYP PIVD+ + Sbjct: 397 KKFDNDGQFIKKYVPELKQVPQKYIHQPNLMNEALQTQYHVHLGENYPKPIVDYASSKKQ 456 Query: 470 TLNQYYAAKK 479 TL Y A+K+ Sbjct: 457 TLFLYEASKE 466 >gi|167646881|ref|YP_001684544.1| deoxyribodipyrimidine photo-lyase [Caulobacter sp. K31] gi|167349311|gb|ABZ72046.1| Deoxyribodipyrimidine photo-lyase [Caulobacter sp. K31] Length = 478 Score = 256 bits (654), Expect = 5e-66, Method: Compositional matrix adjust. Identities = 176/484 (36%), Positives = 237/484 (48%), Gaps = 33/484 (6%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFI--ATPEQWRQHGISARQSHFIYASLLQV 68 +VWLRNDLR+ DN AL AA + VI ++I TP G+ ASL + Sbjct: 10 IVWLRNDLRLADNPALIAAA-ATGRPVIPLYILDETP------GVRPMGD----ASLWWL 58 Query: 69 QKSLSQKGIVFQYHQCS---NFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125 KSL+ + + L+ + +NR Y+ + RD L+ Sbjct: 59 DKSLAALDAALRATGSRLILRRGPARAVLEEVVADAEAAAVVWNRLYDAASIERDSALKA 118 Query: 126 RLQHR-VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNL----VQADLRSLPVP 180 L+ V C+SF+ +L P ++ N + Q YKV+TP+ +A L V+ ++L P Sbjct: 119 WLKDEGVACESFNAGLLNEPWTVKNGSGQPYKVFTPYWRAARDQLHDVHVEPAPKTLAAP 178 Query: 181 AIRLTGPVTPSNI--PRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPA 238 A G P D+ D P GE AL L F V Y +RD P Sbjct: 179 AHWPHGDALEDWTLHPALLDW-STGFDLWTP-GEAGALARLDDFLSGPVQDYGHKRDFPG 236 Query: 239 IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFY 298 ++ TS+LSP+L G + PRQ W + P +L+E+ WREF H + F+ Sbjct: 237 VEATSRLSPHLHFGEIGPRQVWAAARHAAE-AGDAPAGQVEKFLSEIGWREF-NHSILFH 294 Query: 299 PSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITA 358 F P + W K+ +AW +G TG+PI+DA MR+L G+MHNR+RMI A Sbjct: 295 NPDLPHTSFRPEFDGFPWVKNPAAFEAWSRGQTGYPIVDAGMRELWATGFMHNRVRMIVA 354 Query: 359 SFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRF 418 SFLVK LL+DWR GE +F L+D DLASN G WQW A G D+ PYFRIFNP QG++F Sbjct: 355 SFLVKHLLIDWREGEAWFWDTLVDADLASNVGNWQWVAGGGADAAPYFRIFNPIAQGQKF 414 Query: 419 DPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLN----YPLPIVDHKKACHHTLNQY 474 DP G ++R W+PEL +P IH P W D YP PIV H A L Y Sbjct: 415 DPAGAYVRRWVPELAKLPDALIHEP--WKASPDPGAAAARIYPEPIVGHPAARERALEAY 472 Query: 475 YAAK 478 K Sbjct: 473 RGLK 476 >gi|58176791|pdb|1TEZ|A Chain A, Complex Between Dna And The Dna Photolyase From Anacystis Nidulans gi|58176792|pdb|1TEZ|B Chain B, Complex Between Dna And The Dna Photolyase From Anacystis Nidulans gi|58176793|pdb|1TEZ|C Chain C, Complex Between Dna And The Dna Photolyase From Anacystis Nidulans gi|58176794|pdb|1TEZ|D Chain D, Complex Between Dna And The Dna Photolyase From Anacystis Nidulans Length = 474 Score = 256 bits (654), Expect = 6e-66, Method: Compositional matrix adjust. Identities = 171/481 (35%), Positives = 239/481 (49%), Gaps = 26/481 (5%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 L W R DLR++DN L AA S A++I +F P+ + ++ + ++ L ++Q+ Sbjct: 5 LFWHRRDLRLSDNIGLAAARAQS-AQLIGLFCLDPQILQSADMAPARVAYLQGCLQELQQ 63 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130 Q G Q D + Q + +++N+ E RD + L+ Sbjct: 64 RYQQAGSRLLLLQ----GDPQHLIPQLAQQLQAEAVYWNQDIEPYGRDRDGQVAAALKTA 119 Query: 131 VI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQN------LVQADLRSLPVPAIR 183 I D +L P IL+ + Y VY PF K +L L + Sbjct: 120 GIRAVQLWDQLLHSPDQILSGSGNPYSVYGPFWKNWQAQPKPTPVATPTELVDLSPEQLT 179 Query: 184 LTGPVTPSNIPRFFDYPFQAIDPMFPI--GEQNALHILRKFCKEKVYYYVEQRDIPAIQG 241 P+ S +P F D FP+ GE A+ L++FC + Y QR+ PA G Sbjct: 180 AIAPLLLSELPTLKQLGFD-WDGGFPVEPGETAAIARLQEFCDRAIADYDPQRNFPAEAG 238 Query: 242 TSQLSPYLSIGVLSPRQCWNRLKEEF-VDLLIKPKSGAFSWLNELIWREFYRHLMAFYPS 300 TS LSP L G + RQ W + + ++ W EL WREFY+H + +PS Sbjct: 239 TSGLSPALKFGAIGIRQAWQAASAAHALSRSDEARNSIRVWQQELAWREFYQHALYHFPS 298 Query: 301 VCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASF 360 + G P+ ++ W L AW Q TG+PI+DAAMRQL GWMHNR RMI ASF Sbjct: 299 LADG-PYRSLWQQFPWENREALFTAWTQAQTGYPIVDAAMRQLTETGWMHNRCRMIVASF 357 Query: 361 LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDP 420 L KDL++DWR GE++FM L+DGDLA+NNGGWQW+AS+G D P RIFNP Q K+FD Sbjct: 358 LTKDLIIDWRRGEQFFMQHLVDGDLAANNGGWQWSASSGMDPKP-LRIFNPASQAKKFDA 416 Query: 421 QGTFIRHWLPELNNV-PTQYIHAPHSWLDKNDLSLNYPLPIVDH---KKACHHTLNQYYA 476 T+I+ WLPEL +V P I + +++ YP PIV+H +K NQ A Sbjct: 417 TATYIKRWLPELRHVHPKDLISGEITPIERR----GYPAPIVNHNLRQKQFKALYNQLKA 472 Query: 477 A 477 A Sbjct: 473 A 473 >gi|111219604|ref|YP_710398.1| deoxyribodipyrimidine photo-lyase [Frankia alni ACN14a] gi|111147136|emb|CAJ58783.1| Deoxyribodipyrimidine photolyase (DNA photolyase) (Photoreactivating enzyme) [Frankia alni ACN14a] Length = 451 Score = 256 bits (653), Expect = 7e-66, Method: Compositional matrix adjust. Identities = 157/477 (32%), Positives = 234/477 (49%), Gaps = 28/477 (5%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M+V + WLR DLR++D+ AL AA +D V+ +F+ R G + F+Y L Sbjct: 1 MTVSVCWLRRDLRLSDSPALCAAVDGAD-DVLVLFVLDDALRRPAGPV--RLAFLYRCLR 57 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK- 125 ++ L + C D ++ + ++ + Y RRD +E+ Sbjct: 58 ELDDRLGGR-------LCVRRGDPVDVVPEVARAVDARRVHISADYGPYGRRRDGEVEQA 110 Query: 126 -RLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL 184 R R + ++ + PG + ++V+TPF +A ++ + R + P Sbjct: 111 LRAGGRELVRT-GSPYAVAPGRLATAGGTPFRVFTPFYRAWKEHGWR---RPVAEPVGAR 166 Query: 185 TGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244 + IP D + GE+ A L +F + Y E+RD+P TS+ Sbjct: 167 WALLASDGIPADPDLGGTRLPAA---GERAARERLAEFLAGSLTGYAERRDVPGQDTTSR 223 Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304 LSPYL G + PR L D P+ A + +EL WREFY ++A P+ Sbjct: 224 LSPYLKYGCIHPRTVLAEL-----DRATSPRD-AEKFRSELAWREFYAEVLAANPASARA 277 Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364 + ++ +AWK G TGFPI+DA MRQL GW+ NR+RMI ASF+ KD Sbjct: 278 D-LTGALADMAYDPPEGGFEAWKWGRTGFPIVDAGMRQLLAEGWVPNRVRMIEASFVCKD 336 Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424 L V W G +F+ L+DGDLASN+ GWQW A TG D+ PYFR+FNP QG R+DP GT+ Sbjct: 337 LHVHWTHGARWFLDHLVDGDLASNHHGWQWTAGTGTDAAPYFRVFNPVSQGHRYDPDGTY 396 Query: 425 IRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481 +R W+P+L +VP +H P W YP P+VDH +L +Y AA+++ Sbjct: 397 VRRWIPQLRDVPAAKVHEP--WTLPGGPPAGYPAPVVDHATERRESLARYEAARRRG 451 >gi|81298923|ref|YP_399131.1| deoxyribodipyrimidine photo-lyase type I [Synechococcus elongatus PCC 7942] gi|79621|pir||S00757 deoxyribodipyrimidine photo-lyase (EC 4.1.99.3) [validated] - Synechococcus sp. (Anacystis nidulans) gi|48425154|pdb|1OWL|A Chain A, Structure Of Apophotolyase From Anacystis Nidulans gi|48425155|pdb|1OWM|A Chain A, Data1:dna Photolyase RECEIVED X-Rays Dose 1.2 Exp15 PhotonsMM2 gi|48425156|pdb|1OWN|A Chain A, Data3:dna Photolyase RECEIVED X-Rays Dose 4.8 Exp15 PhotonsMM2 gi|48425157|pdb|1OWO|A Chain A, Data4:photoreduced Dna Photolyase RECEIVED X-Rays Dose 1.2 Exp15 PhotonsMM2 gi|48425158|pdb|1OWP|A Chain A, Data6:photoreduced Dna Pholyase RECEIVED X-Rays Dose 4.8 Exp15 PhotonsMM2 gi|157833609|pdb|1QNF|A Chain A, Structure Of Photolyase gi|580717|emb|CAA30190.1| unnamed protein product [Synechococcus elongatus PCC 6301] gi|81167804|gb|ABB56144.1| Deoxyribodipyrimidine photo-lyase type I [Synechococcus elongatus PCC 7942] Length = 484 Score = 256 bits (653), Expect = 7e-66, Method: Compositional matrix adjust. Identities = 173/486 (35%), Positives = 241/486 (49%), Gaps = 36/486 (7%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 L W R DLR++DN L AA S A++I +F P+ + ++ + ++ L ++Q+ Sbjct: 6 LFWHRRDLRLSDNIGLAAARAQS-AQLIGLFCLDPQILQSADMAPARVAYLQGCLQELQQ 64 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130 Q G Q D + Q + +++N+ E RD + L+ Sbjct: 65 RYQQAGSRLLLLQ----GDPQHLIPQLAQQLQAEAVYWNQDIEPYGRDRDGQVAAALKTA 120 Query: 131 VI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPA-------- 181 I D +L P IL+ + Y VY PF K QA + PV Sbjct: 121 GIRAVQLWDQLLHSPDQILSGSGNPYSVYGPFWKNW-----QAQPKPTPVATPTELVDLS 175 Query: 182 ---IRLTGPVTPSNIPRFFDYPFQAIDPMFPI--GEQNALHILRKFCKEKVYYYVEQRDI 236 + P+ S +P F D FP+ GE A+ L++FC + Y QR+ Sbjct: 176 PEQLTAIAPLLLSELPTLKQLGFD-WDGGFPVEPGETAAIARLQEFCDRAIADYDPQRNF 234 Query: 237 PAIQGTSQLSPYLSIGVLSPRQCWNRLKEEF-VDLLIKPKSGAFSWLNELIWREFYRHLM 295 PA GTS LSP L G + RQ W + + ++ W EL WREFY+H + Sbjct: 235 PAEAGTSGLSPALKFGAIGIRQAWQAASAAHALSRSDEARNSIRVWQQELAWREFYQHAL 294 Query: 296 AFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRM 355 +PS+ G P+ ++ W L AW Q TG+PI+DAAMRQL GWMHNR RM Sbjct: 295 YHFPSLADG-PYRSLWQQFPWENREALFTAWTQAQTGYPIVDAAMRQLTETGWMHNRCRM 353 Query: 356 ITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQG 415 I ASFL KDL++DWR GE++FM L+DGDLA+NNGGWQW+AS+G D P RIFNP Q Sbjct: 354 IVASFLTKDLIIDWRRGEQFFMQHLVDGDLAANNGGWQWSASSGMDPKP-LRIFNPASQA 412 Query: 416 KRFDPQGTFIRHWLPELNNV-PTQYIHAPHSWLDKNDLSLNYPLPIVDH---KKACHHTL 471 K+FD T+I+ WLPEL +V P I + +++ YP PIV+H +K Sbjct: 413 KKFDATATYIKRWLPELRHVHPKDLISGEITPIERR----GYPAPIVNHNLRQKQFKALY 468 Query: 472 NQYYAA 477 NQ AA Sbjct: 469 NQLKAA 474 >gi|144897443|emb|CAM74307.1| Deoxyribodipyrimidine photo-lyase [Magnetospirillum gryphiswaldense MSR-1] Length = 457 Score = 255 bits (652), Expect = 1e-65, Method: Compositional matrix adjust. Identities = 160/465 (34%), Positives = 239/465 (51%), Gaps = 50/465 (10%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 LVWLR DLR+TD+ AL A V+ F + R G ++R +++ SL + Sbjct: 7 LVWLRRDLRLTDHPALTHAAQQG--PVVLAFCHDDQDGRALGGASRW--WLHHSLAALGD 62 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130 + + +C + I L C + V ++N + + + + L + Sbjct: 63 T-----VTLARGRC---EAEIPRLAEACGARAV---YWNASADPALSATEARVRQAL--K 109 Query: 131 VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNL------------VQADLRSLP 178 + ++F L G++ +A ++V+TPF + + V A LP Sbjct: 110 IPTETFAGDELFSIGAVRTNAGTPFQVFTPFWRTALALPPPPQPLPRPAPLVLAPCPGLP 169 Query: 179 VPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPA 238 + A+ L +P+ D+ ++ + ++ GE A L F V Y RD+PA Sbjct: 170 LAALEL--------MPKL-DW-WRGMAELWQPGEAGAAARLADFLDGPVETYQRDRDLPA 219 Query: 239 IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFY 298 GTS LSP+L+ G +SPRQ W+ + + P G ++L EL WREF RHL+A Sbjct: 220 KPGTSLLSPHLAFGEISPRQIWHAARA------LPPGDGIHTFLKELGWREFSRHLLARQ 273 Query: 299 PSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITA 358 P + P P W D L+ W+ G TG+PIIDA +RQL GWMHNR+RMI A Sbjct: 274 PDLAT-IPLRPEFRAFPWRDDPEALRKWQMGRTGYPIIDAGLRQLWQTGWMHNRVRMIVA 332 Query: 359 SFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRF 418 SFL+KDLL+ W+ GE +F L+D D A+N WQW A +G D+ P+FRIFNP QG++F Sbjct: 333 SFLIKDLLIPWQAGEAWFWDTLVDADSANNAASWQWVAGSGADAAPFFRIFNPVTQGEKF 392 Query: 419 DPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDH 463 DP GT++R W+PEL ++P ++H P W K + YP P+VDH Sbjct: 393 DPDGTYVRTWVPELAHLPKAFVHQP--W--KMGRAPGYPPPMVDH 433 >gi|123967845|ref|YP_001008703.1| putative DNA photolyase [Prochlorococcus marinus str. AS9601] gi|123197955|gb|ABM69596.1| putative DNA photolyase [Prochlorococcus marinus str. AS9601] Length = 477 Score = 255 bits (651), Expect = 1e-65, Method: Compositional matrix adjust. Identities = 173/474 (36%), Positives = 245/474 (51%), Gaps = 36/474 (7%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 L W R DLRI DN+AL A S+A + + +I S+R + F+ SL ++ Sbjct: 7 LFWHRKDLRIFDNQALIKAFSLSNA-ITSTYIFDKNYSHDFNASSR-AWFLGNSLQELGN 64 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130 + + G + D + + + +F+NR E E+ RD ++K L+ + Sbjct: 65 NWKKMGSRLVMEE----GDPVLIIPKLAKKINAKFVFWNRSIEPYEINRDLQIKKNLKEQ 120 Query: 131 VI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALI----------QNLVQADLRSLPV 179 I D +L+ P I + Y VY PF K L Q+ V + + Sbjct: 121 NIQVIETWDHLLVEPLKIFSGNNNPYSVYGPFYKNLKSKMNLLGLYEQDKVGFQFKDIDN 180 Query: 180 PAIRLTGPVTPSNIPRFFD---YPFQAIDPMFPIGEQNALHILRKFCKEK-VYYYVEQRD 235 T + S + +F +P I P P GE A +L F EK +Y Y RD Sbjct: 181 KLKDKTINSSDSVLEKFIKNIKFPGSNICPCKP-GENAAETLLENFINEKKIYSYNSARD 239 Query: 236 IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAF----SWLNELIWREFY 291 P+ GTS LS L G +S R+ WN DL G + +W EL+WREFY Sbjct: 240 FPSHNGTSFLSASLRFGTISIRKVWNATLNLNSDL---ENQGNYLSIETWQKELVWREFY 296 Query: 292 RHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHN 351 +H + +P + G P+ + W ++ Q W G TG PI+DAAMRQLN+ GWMHN Sbjct: 297 QHCLFHFPELEKG-PYRKKWDHFRWQNNNEWFQHWSNGETGVPIVDAAMRQLNSTGWMHN 355 Query: 352 RLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNP 411 R RMI ASFLVKDL+ +W++GE+ FM L+DGDLA+NNGGWQW+AS+G D P RIFNP Sbjct: 356 RCRMIVASFLVKDLICNWQMGEKKFMETLVDGDLAANNGGWQWSASSGMDPKP-LRIFNP 414 Query: 412 TIQGKRFDPQGTFIRHWLPELNNVP-TQYIHAPHSWLDKNDLSLNYPLPIVDHK 464 Q K+FDP +I++W+PEL+ V ++ ++ S L+KND Y PIV+HK Sbjct: 415 YTQAKKFDPICEYIKYWIPELSKVSNSELLNGDISNLEKND----YSSPIVNHK 464 >gi|326799093|ref|YP_004316912.1| deoxyribodipyrimidine photo-lyase [Sphingobacterium sp. 21] gi|326549857|gb|ADZ78242.1| Deoxyribodipyrimidine photo-lyase [Sphingobacterium sp. 21] Length = 437 Score = 255 bits (651), Expect = 1e-65, Method: Compositional matrix adjust. Identities = 169/478 (35%), Positives = 238/478 (49%), Gaps = 59/478 (12%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFI-ATPEQWRQHGISARQSHFIYASLLQVQ 69 + W R DLR+ DN ALY A S KV VFI T + + FI+ L + Sbjct: 9 IFWFRRDLRLQDNHALYEAL-RSGYKVQPVFIFDTAILSKLEDRDDARVSFIHRELRAIN 67 Query: 70 KSLSQK--GIVFQYHQCSN--FDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125 K L Q+ GI F YH N +++ ++ D + ++N YE +RDK + Sbjct: 68 KQLEQQSSGIAF-YHDEPNKAWEEIVKEFDPIAV-------YFNHDYEPYARKRDKEISD 119 Query: 126 RL-QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL 184 L Q+ + +F D V+ +L + Y V+TP+R + L ++ L++ P Sbjct: 120 FLRQYHIAVYTFKDQVIFEKEEVLKSNGEPYTVFTPYRNCWLAQLGESHLKNYPSERHLA 179 Query: 185 TGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ-GTS 243 IP + F A FP A+ + Y + RDIPA + GTS Sbjct: 180 ALRSHWQTIPTLKELGFVATKQTFPSKSYKAV----------IGDYHQTRDIPADEKGTS 229 Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKP--KSGAFSWLNELIWREFYRHLMAFYPSV 301 LS +L G +S R LIK ++ +WLNELIWREFY ++ +P Sbjct: 230 HLSVHLRFGTVSIRS------------LIKDARQASEKTWLNELIWREFYMMILWHFPET 277 Query: 302 CMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFL 361 + K F ++I W + AW QG TG+P++DA MRQLN G+MHNR+RM+ ASFL Sbjct: 278 -VNKAFKSAYDRIHWRNNESEFDAWCQGKTGYPLVDAGMRQLNETGFMHNRVRMVVASFL 336 Query: 362 VKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQ 421 K LL+DWR GE YF +L D + +SN G WQWAA +GND+ PYFR+FNP IQ K+FDP+ Sbjct: 337 CKHLLIDWRWGEAYFARKLQDYEQSSNVGNWQWAAGSGNDAAPYFRVFNPEIQLKKFDPK 396 Query: 422 GTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479 + + W+PEL++ YP PI++HKKA L Y A K Sbjct: 397 LVYAKRWIPELDD------------------PFRYPSPIIEHKKARERALEVYKNALK 436 >gi|327402941|ref|YP_004343779.1| Deoxyribodipyrimidine photo-lyase [Fluviicola taffensis DSM 16823] gi|327318449|gb|AEA42941.1| Deoxyribodipyrimidine photo-lyase [Fluviicola taffensis DSM 16823] Length = 434 Score = 254 bits (650), Expect = 2e-65, Method: Compositional matrix adjust. Identities = 166/471 (35%), Positives = 235/471 (49%), Gaps = 56/471 (11%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 L W R DLRI+DN LY A S KV A+FI + + ++ FI+ ++ +Q+ Sbjct: 6 LFWHRRDLRISDNAGLYKAL-KSGLKVQAIFIFDSQILAHLSKNDQRVLFIHQTIQNLQQ 64 Query: 71 SLSQKGI-VFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH 129 + + G ++ +H + E + + + +F NR YE N ++RDK + L Sbjct: 65 AYQKLGASLWIFH-----GNPTEIIPQLVQKHEIKHVFCNRDYEPNALKRDKSVYDALT- 118 Query: 130 RVICK--SFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187 ++ C+ D V+ I+ Y V+TP+ K + L D P P + Sbjct: 119 KIGCQFSGSKDHVIFEKEEIVKSDGNPYHVFTPYMKRWKEQL--NDFYLQPYPVEKYIHN 176 Query: 188 VTPSN---IPRFFDYPFQAIDPM-FPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS 243 + P+N +P + F I FP E + + Y RD PAI GT+ Sbjct: 177 LNPNNHVELPTLSELGFSEIQTQHFPSAE---------IPQTIIQSYENTRDFPAINGTT 227 Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCM 303 +LS +L G +S R E +K F NELIWR+FY+ ++ FYP + Sbjct: 228 RLSIHLRFGTISIR--------ELAKQALKTNEKYF---NELIWRDFYQMILFFYPRT-I 275 Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363 + F +IEW D L QAW G TG+P++DA MR+LN G MHNR+RM+ ASF K Sbjct: 276 EETFRKEYGRIEWEFDEKLFQAWCDGKTGYPLVDAGMRELNETGHMHNRVRMVVASFFCK 335 Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423 L DW++GE YF +LLD +LASN GGWQWAA G D+ PYFRIFNPT Q +RFDPQ Sbjct: 336 HLFHDWKLGERYFAEKLLDFELASNVGGWQWAAGCGVDAAPYFRIFNPTTQQERFDPQFE 395 Query: 424 FIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQY 474 +I+ W+PE + +YP PIV+HK A TL Y Sbjct: 396 YIKKWVPEFG-------------------TSDYPQPIVEHKWARERTLENY 427 >gi|124025078|ref|YP_001014194.1| putative DNA photolyase [Prochlorococcus marinus str. NATL1A] gi|123960146|gb|ABM74929.1| putative DNA photolyase [Prochlorococcus marinus str. NATL1A] Length = 504 Score = 254 bits (650), Expect = 2e-65, Method: Compositional matrix adjust. Identities = 168/490 (34%), Positives = 248/490 (50%), Gaps = 53/490 (10%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWR-QHGISARQSHFIYASLLQVQ 69 + W R DLR DN L+ A NS + +I V++ P S ++ F+ SLL++Q Sbjct: 18 IFWHRRDLRFGDNIGLFEASKNSKS-LIGVYVLDPNLLDLNRTTSEAKNWFLGESLLELQ 76 Query: 70 KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDK-LLEKRLQ 128 K+ +G + D IE + +++N E E+ RDK + EK + Sbjct: 77 KNWEIRGSLLLILN----GDPIELISKLAELVHAECIYWNENIEPYEINRDKQIAEKLSK 132 Query: 129 HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALI----------QNLVQADLRSLP 178 + +F D +++ P I + + YKVY PF + I NL+Q + Sbjct: 133 EKRKVYTFLDQLIVNPSDIKTNNDEPYKVYGPFYRKWIDIINRTKSSDNNLIQTSETAKK 192 Query: 179 VPAI--RLTGPVTPSNIPRFFDYPFQAIDPMFPI-------------GEQNALHILRKFC 223 + + R + S++ ++I + GE ++ L F Sbjct: 193 LTGLNERELSSIKNSDLNYCITKKSKSIYELLSSNRFSNTSLCPCKPGESESIKQLNSFI 252 Query: 224 KEKVY-YYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAF-SW 281 V Y + RDIP+++ TS LS LS+G +S R WN + + K + +W Sbjct: 253 HSGVINSYNQARDIPSLENTSNLSAALSLGTISCRAVWNGAQVSKSSTHDEYKINSIDTW 312 Query: 282 LNELIWREFYRHLMAFYPSVCMGKPF------IPWTEKIEWNKDSHLLQAWKQGYTGFPI 335 + EL WREFY++ + +P + G P+ PW + +W +AW G TG PI Sbjct: 313 IKELAWREFYQNALINFPELEKG-PYREKWLNFPWQNRPDW------FEAWGDGLTGIPI 365 Query: 336 IDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWA 395 IDAAMRQL GWMHNR RMI ASFLVKDLL+DWR+GE +FM L+DGDLA+NNGGWQW+ Sbjct: 366 IDAAMRQLKCSGWMHNRCRMIVASFLVKDLLIDWRLGELFFMKSLVDGDLAANNGGWQWS 425 Query: 396 ASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPT-QYIHAPHSWLDKNDLSL 454 AS+G D P RIFNP Q +FD G +IR W+PEL+++ T + S ++N Sbjct: 426 ASSGMDPKP-MRIFNPFRQASKFDEDGEYIRKWIPELSHISTPNLLSGEISSAERN---- 480 Query: 455 NYPLPIVDHK 464 +YP PI++HK Sbjct: 481 SYPNPIINHK 490 >gi|298291394|ref|YP_003693333.1| deoxyribodipyrimidine photo-lyase [Starkeya novella DSM 506] gi|296927905|gb|ADH88714.1| Deoxyribodipyrimidine photo-lyase [Starkeya novella DSM 506] Length = 479 Score = 254 bits (649), Expect = 2e-65, Method: Compositional matrix adjust. Identities = 165/485 (34%), Positives = 249/485 (51%), Gaps = 33/485 (6%) Query: 8 SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFI-ATPEQWRQHGISARQSHFIYASLL 66 S LVW R+DLR+ DN AL+AA + V+ + E R G +AR ++ +L Sbjct: 4 SPALVWFRDDLRLADNPALHAAQRSGRPLVLLYLLDEESEGIRPLGGAARW--WLGRALA 61 Query: 67 QVQKSLSQKG--IVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLE 124 V +++ KG ++ + + E + + + + +++NR+Y E+ D L+ Sbjct: 62 SVTEAIEAKGGQLILRRGKAG------EVVPAVAAEAKAGAIYWNRRYGAAEIAVDAALK 115 Query: 125 KRL-QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIR 183 L Q ++ +SF+ S+L P ++ + +KV+ PF +N Q D+R Sbjct: 116 TELAQKGLMVESFNGSLLHEPWTVKTQSGGPFKVFGPF----YRNAAQHDIRRPARVGSH 171 Query: 184 LTGPVTPSNIPRFFDYPFQAIDPMFPIG--------EQNALHILRKFCKEKVYYYVEQRD 235 TP+ D+ + P + G E L F + Y RD Sbjct: 172 WHFAETPAG-DELRDWKLEPTTPDWAGGLRESWIPGEDGGRAALAAFVDGGLRSYAAGRD 230 Query: 236 IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLM 295 P ++ TS+LSPYL G LSP+Q ++ D + +++EL WREF HL+ Sbjct: 231 RPDMEHTSRLSPYLRFGHLSPQQVLAAVRHA-ADAGEVRGTDVEKFVSELYWREFSYHLL 289 Query: 296 AFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRM 355 +P + F + EWN+D+ + +AW++G TG+P+IDA MRQL GWMHNR+RM Sbjct: 290 FHFPDLAQVN-FNRRFDGFEWNQDAKIERAWQRGLTGYPLIDAGMRQLWQTGWMHNRVRM 348 Query: 356 ITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQG 415 + ASFL+K LVDWR GE +F L+D D A+N WQW A +G D+ PYFRIFNP QG Sbjct: 349 VAASFLIKHALVDWRRGEVWFWDTLVDADPANNAASWQWVAGSGADAAPYFRIFNPVTQG 408 Query: 416 KRFDPQGTFIRHWLPELNNVPTQYIH----APHSWLDKNDLSLN--YPLPIVDHKKACHH 469 ++FDP G ++R ++PEL +P IH AP L + + L YP PIVDH A Sbjct: 409 EKFDPDGAYVRRFVPELAGLPDTSIHKPWQAPPQVLAQAGVRLGETYPHPIVDHAAARRR 468 Query: 470 TLNQY 474 L +Y Sbjct: 469 ALERY 473 >gi|72383487|ref|YP_292842.1| deoxyribodipyrimidine photo-lyase type I [Prochlorococcus marinus str. NATL2A] gi|72003337|gb|AAZ59139.1| deoxyribodipyrimidine photo-lyase type I [Prochlorococcus marinus str. NATL2A] Length = 493 Score = 253 bits (647), Expect = 3e-65, Method: Compositional matrix adjust. Identities = 168/491 (34%), Positives = 252/491 (51%), Gaps = 55/491 (11%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWR-QHGISARQSHFIYASLLQVQ 69 + W R DLR DN L+ A NS + +I V++ P+ S ++ F+ SL+++Q Sbjct: 7 IFWHRRDLRFGDNIGLFEASKNSKS-LIGVYVLDPKLLDLNRTTSEAKNWFLGESLIELQ 65 Query: 70 KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL-Q 128 K+ +G D IE + +++N E E+ RDK + ++L + Sbjct: 66 KNWEIRGSRLLILN----GDPIELISKLAELVHAECIYWNENIEPYEINRDKQIAEKLSK 121 Query: 129 HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALI----------QNLVQADLRSLP 178 + +F D +++ P +I + + YKVY PF + I NL+Q + Sbjct: 122 EKRKVYTFLDQLIVNPSNIKTNNDEPYKVYGPFYRKWIDLINITKSSENNLIQTSETAKQ 181 Query: 179 VPAI--RLTGPVTPSNIPRFFDYPFQAIDPMFPI-------------GEQNALHILRKFC 223 + + R + S++ ++I + + GE ++ L F Sbjct: 182 LTGLNERELSSIKNSDLNYCITNKSKSIYELLSLNRFNKTNLCPCKPGESESIKQLNSFI 241 Query: 224 KEKVY-YYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWN--RLKEEFVDLLIKPKSGAFS 280 V Y + RDIP+++ TS LS LS+G +S R WN ++ + D K S + Sbjct: 242 HSGVINSYNKARDIPSLENTSHLSAALSLGTISCRVVWNGAQVSKNATDDEYKINS-IDT 300 Query: 281 WLNELIWREFYRHLMAFYPSVCMGKPF------IPWTEKIEWNKDSHLLQAWKQGYTGFP 334 W+ EL WREFY++ + +P + G P+ PW + +W +AW G TG P Sbjct: 301 WIKELAWREFYQNALINFPELEKG-PYREKWLDFPWQNRPDW------FEAWGDGLTGIP 353 Query: 335 IIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQW 394 IIDAAMRQL GWMHNR RMI ASFLVKDLL+DWR+GE +FM L+DGDLA+NNGGWQW Sbjct: 354 IIDAAMRQLKCSGWMHNRCRMIVASFLVKDLLIDWRLGELFFMKSLVDGDLAANNGGWQW 413 Query: 395 AASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPT-QYIHAPHSWLDKNDLS 453 +AS+G D P RIFNP Q +FD G +IR W+PEL+++ T + S ++N Sbjct: 414 SASSGMDPKP-MRIFNPFRQASKFDEDGEYIRKWIPELSHISTPNLLSGEISSAERN--- 469 Query: 454 LNYPLPIVDHK 464 +YP PI+ HK Sbjct: 470 -SYPKPIISHK 479 >gi|254292413|ref|YP_003058436.1| deoxyribodipyrimidine photo-lyase [Hirschia baltica ATCC 49814] gi|254040944|gb|ACT57739.1| Deoxyribodipyrimidine photo-lyase [Hirschia baltica ATCC 49814] Length = 475 Score = 253 bits (646), Expect = 4e-65, Method: Compositional matrix adjust. Identities = 165/490 (33%), Positives = 254/490 (51%), Gaps = 44/490 (8%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 ++L W R DLR++DN AL +A SD IA+FI E Q + + +++ SL+++ Sbjct: 1 MNLCWFRQDLRLSDNPALRSAL--SDNSAIALFILE-ETDTQRPMGSACKAWLHESLIRL 57 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128 Q L G+ + D+ + + ++ +++NR+Y+ +V D+ L + L+ Sbjct: 58 QSDLEAIGVPLVLRRG----DARDIIPKLTSDLKIDNVYWNRRYDPKDVAIDRALMEHLK 113 Query: 129 HR-VICKSFDDSVLLPPGSILN-HALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 V +SF +VL P I + A YKV++PF KA ++ VPA L Sbjct: 114 EEGVNVESFKANVLFEPWEIKSAGAGTPYKVFSPFWKAALKE---------GVPAQSLAV 164 Query: 187 PVTPSNIPRFFDYPFQAID-----PMFP-----------IGEQNALHILRKFCKEKVYYY 230 P + P+ PF ++ P P GE A ++F + + Y Sbjct: 165 PTKIQSKPQLDQLPFDNLEDWDLMPASPNWTNGFWDVWVPGEAGAFERFKEFLEINLKGY 224 Query: 231 VEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREF 290 + RD+P+ TS LSP+L G +SP Q W+ + + K + +L E+ WREF Sbjct: 225 SQNRDVPSKNHTSCLSPHLRFGEISPLQIWHGVHAHSGGEVDK---DGYKFLAEVGWREF 281 Query: 291 YRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMH 350 H + FY + + W +D + L AW+ G TG+P++DA MR+L G++H Sbjct: 282 -SHSILFYADNLSQTNWKSDFDGFAWVQDENGLTAWQSGQTGYPLVDAGMRELWQTGYIH 340 Query: 351 NRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFN 410 NR+RM+ ASFL+K L +DWR GE +F L+D A+N WQW A +G D+ P+FRIFN Sbjct: 341 NRVRMVVASFLIKHLRIDWREGEAWFWDTLVDACPANNPASWQWVAGSGADASPFFRIFN 400 Query: 411 PTIQGKRFDPQGTFIRHWLPELNNVPTQYIH----APHSWLDKNDLSL--NYPLPIVDHK 464 P +Q ++FDP+G++IR W+PEL N+ + IH AP L + + L NYP PIVDHK Sbjct: 401 PIMQSEKFDPKGSYIRKWVPELANLDNKSIHTPWEAPKLVLQEVGVRLGENYPKPIVDHK 460 Query: 465 KACHHTLNQY 474 A L Y Sbjct: 461 TARDKALAAY 470 >gi|255720052|ref|XP_002556306.1| KLTH0H09922p [Lachancea thermotolerans] gi|238942272|emb|CAR30444.1| KLTH0H09922p [Lachancea thermotolerans] Length = 574 Score = 253 bits (645), Expect = 7e-65, Method: Compositional matrix adjust. Identities = 165/512 (32%), Positives = 250/512 (48%), Gaps = 42/512 (8%) Query: 2 KATTAMSVHLVWLRNDLRITDNKALYAAC--------HNSDAKVIAVFIATPEQWRQHGI 53 KA + VH W R DLR+ DN AL A DA++IA++ WR H Sbjct: 68 KADISAVVH--WFRTDLRVRDNAALSNAIKLLREIRGQKKDAQLIALYTINEHDWRAHLD 125 Query: 54 SARQSHFIYASLLQVQKSLSQKGIVFQYHQ-------CSNFDDSIEWLDSYC--LQQRVT 104 S + F +L +++ L Q + + S + ++W+ C L Q Sbjct: 126 SGWKLTFALNALESLREMLKQMNVALVVRKFESKKPLLSRSSEFVDWVKEQCVSLAQGNV 185 Query: 105 KLFYNRQYEINEVRRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKA 164 + N QYE +E+ RD L + + + + D ++ PGS+ Y V+TP+ K Sbjct: 186 LVTANAQYETDELYRDLKLFDKQDEQFRFQVYHDQCIVQPGSLTTGKGSQYTVFTPWYKR 245 Query: 165 LIQNLV--QADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMF-----------PIG 211 ++ L + ++ + A+ V S + +F ++ D P Sbjct: 246 WVEYLKSHKQGKEAIKIHAVDQESKVNES-LAKFESEAYELSDEFLAYLPCDKLEVPPAT 304 Query: 212 EQNALHILRKFCKE-KVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDL 270 E +A +L++F + Y E++D ++ TS LS Y++ G++S R+ NR E D Sbjct: 305 EADAHELLQEFISSGNAHKYNEKKDTLSLDSTSHLSCYITSGLISTREVVNRAFHENGDS 364 Query: 271 L----IKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAW 326 L IK + +++ E+ WR+FY+H+M +P + M T I+W D W Sbjct: 365 LMRRDIKQNNSVENFIKEVAWRDFYKHVMCNWPYMSMEIAIKFETMDIKWENDEEKFSKW 424 Query: 327 KQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLA 386 G TG P++DA MR+L G++ NR RMI ASFL K+LLVDWR GE +F LLD DLA Sbjct: 425 CLGETGLPVVDAIMRKLLYTGYISNRCRMIVASFLSKNLLVDWRWGERWFRKHLLDADLA 484 Query: 387 SNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVP-TQYIHAPHS 445 SN GGW + +STG D+ PYFRIFN +Q +R+DP G F++ W+PEL + + I S Sbjct: 485 SNAGGWGFCSSTGIDAQPYFRIFNMKLQCERYDPDGKFVKMWVPELKDADNVRIIREGRS 544 Query: 446 WLDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477 D D YP PIVD K + L + A Sbjct: 545 EKDAVD---GYPSPIVDLKDSRERALEAFREA 573 >gi|182414480|ref|YP_001819546.1| deoxyribodipyrimidine photo-lyase [Opitutus terrae PB90-1] gi|177841694|gb|ACB75946.1| Deoxyribodipyrimidine photo-lyase [Opitutus terrae PB90-1] Length = 501 Score = 252 bits (644), Expect = 7e-65, Method: Compositional matrix adjust. Identities = 169/497 (34%), Positives = 249/497 (50%), Gaps = 60/497 (12%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFI-----ATP--------EQWR-QHG 52 M+ L+W R DLR+ DN AL+AA VI V++ +P + W Q G Sbjct: 1 MTPTLLWFRQDLRLQDNPALHAALARG-GPVIPVYVWEESCESPAAEGARANDGWAAQPG 59 Query: 53 ISARQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQY 112 ++R +++ SL + ++ ++G + D + L +++NR+Y Sbjct: 60 AASRW--WLHHSLEALDAAVRERGGRLILRR----GDPLAELQEIVRATGAKGVYWNRRY 113 Query: 113 EINEVRRDKLLEKRLQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQ 171 E RD ++ L + K+F+ ++L P +ILN ++V++ + + + L Sbjct: 114 EPAARARDARVQTELAAAGLDVKTFNSALLNEPETILNKQGGPFQVFSAYWRHCL-TLPV 172 Query: 172 ADLRSLPVPAIRLTGPV-TPSNIPRFFDYPFQAIDP----------MFPIGEQNALHILR 220 A R LP GP+ P PR D + P + GE +A + Sbjct: 173 AAPRKLPA------GPIPAPERWPRSLDVAALELRPRVAWDRGLAQAWTPGEASAAKRMT 226 Query: 221 KFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCW----NRLKEEFVDLLIKPKS 276 +F + Y E+RD P GTS LS L G +SPRQ W R +E V P + Sbjct: 227 RFVAGAIDRYDEERDFPGCDGTSMLSAALHWGEISPRQLWAAVRGRSRESGV---FPPSN 283 Query: 277 GAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKD--SHLLQAWKQGYTGFP 334 GA +L EL WREF HL+ +P + +P + W +D L+AW++G TG+P Sbjct: 284 GARIFLAELGWREFAYHLLWHFPHT-IEQPLRRAFARFSWAEDPEGRRLRAWQRGQTGYP 342 Query: 335 IIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQW 394 I+DA MRQL GWMHNR+RMI ASFLVK L + W G +F L+D DLA+N GWQW Sbjct: 343 IVDAGMRQLWQTGWMHNRVRMIVASFLVKHLRLSWPHGATWFWDTLVDADLANNTLGWQW 402 Query: 395 AASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND--- 451 +A G D+ PYFRIF P +QG++FD G ++R W+PEL +P +++HAP W Sbjct: 403 SAGCGADAAPYFRIFAPVLQGRKFDSDGVYVRRWVPELARLPDRFLHAP--WTATAQTLA 460 Query: 452 -----LSLNYPLPIVDH 463 L NYP P+VDH Sbjct: 461 AAGVRLGENYPRPVVDH 477 >gi|170780895|ref|YP_001709227.1| putative deoxyribodipyrimidine photolyase [Clavibacter michiganensis subsp. sepedonicus] gi|169155463|emb|CAQ00571.1| putative deoxyribodipyrimidine photolyase [Clavibacter michiganensis subsp. sepedonicus] Length = 508 Score = 252 bits (644), Expect = 8e-65, Method: Compositional matrix adjust. Identities = 163/508 (32%), Positives = 255/508 (50%), Gaps = 46/508 (9%) Query: 3 ATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIY 62 A A +VWLR+DLR+ DN A++AA + ++ +++ E + +++ Sbjct: 17 ADQAHGPTIVWLRDDLRVADNPAMHAAVERGE-PIVVLYVLDEESAGIRPLGGAARWWLH 75 Query: 63 ASLLQVQKSLSQKG--IVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120 SL ++ +SL G +V + + ++ +D + + +NR+Y E+ D Sbjct: 76 MSLSRLGESLRGLGSPLVLRRGKAADV------VDDLVREVGAGAVLWNRRYGGAEIAVD 129 Query: 121 KLLEKRLQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPV 179 ++K L R + +SF S+L+ P +++N + ++VYTPF K + + P Sbjct: 130 TAIKKDLGDRGLDVRSFQGSLLVEPWTVVNKQGEPFRVYTPFWKTAQDR--EEPRKPFPA 187 Query: 180 PAIRLTGPVTPSNIPRFFDYPFQAIDPMFPI-----------GEQNALHILRKFCKEKVY 228 P P PR D + P P GE L L F ++ Sbjct: 188 P----DALEAPRKAPRSDDLDDWGLLPTKPDWAAGLREACDPGEAAGLQRLEDFVHHELE 243 Query: 229 YYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWR 288 Y QRD PA TS+LS YL G +SP Q W+R++ + + A +L+EL WR Sbjct: 244 DYAAQRDEPAAMTTSRLSAYLRWGEVSPFQVWHRVQRTRGKKVGGDEVNATKFLSELGWR 303 Query: 289 EFYRHLMAFYPSVCMGKPFIPWTEKIEWNKD-SHLLQAWKQGYTGFPIIDAAMRQLNTIG 347 EF HL+ P + + F+P + W++ L AW++G TG P++DA MR L G Sbjct: 304 EFSYHLLYHQPDLAT-RNFVPRFDAFPWDEPRDDTLGAWQRGETGVPLVDAGMRALWKDG 362 Query: 348 WMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFR 407 +HNR+RM+ ASFL+K+LL+DWR GE++F L+D D A+N WQW A +G D+ PYFR Sbjct: 363 HLHNRVRMVVASFLIKNLLIDWRHGEQWFWDTLVDADAANNAASWQWVAGSGADAAPYFR 422 Query: 408 IFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLN------------ 455 +FNP +QG++FDP G +IR ++PEL + P +H P W + DL + Sbjct: 423 VFNPVLQGQKFDPSGEYIRSYVPELAHAPRDVVHEP--WKAQGDLVASAEDDADASADGG 480 Query: 456 ---YPLPIVDHKKACHHTLNQYYAAKKQ 480 YP PIVD K++ L Y K + Sbjct: 481 LAAYPSPIVDLKESRQRALAAYDEIKDR 508 >gi|317968588|ref|ZP_07969978.1| deoxyribodipyrimidine photolyase [Synechococcus sp. CB0205] Length = 479 Score = 252 bits (644), Expect = 9e-65, Method: Compositional matrix adjust. Identities = 172/478 (35%), Positives = 239/478 (50%), Gaps = 35/478 (7%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 L W R DLR+ DN L AA + V VF+ P ++ + F+ SL ++Q Sbjct: 7 LFWHRRDLRLVDNLGLAAAAAAT-LAVTGVFVLDPAILSAADMAPARVWFLLESLKELQA 65 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130 S + G Q D E L + +NR E RD+ + LQ + Sbjct: 66 SWRKAGSQLLLLQ----GDPAEVLPQLAKAIGAGVVAWNRDVEPYGRERDRRVAAALQAQ 121 Query: 131 VICKSFD-DSVLLPPGSILNHALQMYKVYTPFRK---ALIQNLVQADL---RSLPVPAIR 183 D D +L+ P ++ Y+VY PF++ ++ +A RS P + Sbjct: 122 GQKVLVDWDQLLVAPEALKTGGGDPYRVYGPFKRNWFGQVERRAEAGELAPRSAPQGLLA 181 Query: 184 LTGPVTPSNIPRFFDYP-FQAIDPMF------PI--GEQNALHILRKFCKEK-VYYYVEQ 233 G +P + P +++ F P GE A L FC + Y Sbjct: 182 YDG-----ELPVLAELPSLESLGKTFLGAELCPCRPGEAAAKQQLEAFCDGGPLLSYEPG 236 Query: 234 RDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKE-EFVDLLIKPKSGAFSWLNELIWREFYR 292 R++P GTS LS L G LSPRQ W+ ++ + + + + W EL WREFY+ Sbjct: 237 RNMPGEAGTSGLSAALKFGTLSPRQAWDAAQQAKALARSDEQRESIQVWEQELAWREFYQ 296 Query: 293 HLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNR 352 + +P + G P+ P + W D QAW G TG PIIDAAMRQLN GWMHNR Sbjct: 297 QALFHFPELADG-PYRPQWKLFPWENDPDRYQAWCDGLTGMPIIDAAMRQLNESGWMHNR 355 Query: 353 LRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPT 412 RMI AS+LVKDL+ DWR+GE FM++L+DGDLA+NNGGWQW+AS+G D P RIFNP Sbjct: 356 CRMIVASYLVKDLICDWRLGETAFMARLVDGDLAANNGGWQWSASSGMDPKP-LRIFNPA 414 Query: 413 IQGKRFDPQGTFIRHWLPELNNVPTQ-YIHAPHSWLDKNDLSLNYPLPIVDHKKACHH 469 Q +FDP+G +IR WLPEL++V T+ + + +++ YP PIV HKK H Sbjct: 415 TQASKFDPEGDYIRRWLPELSHVNTKDLLSGEITPMERR----GYPAPIVSHKKQQAH 468 >gi|116671293|ref|YP_832226.1| deoxyribodipyrimidine photo-lyase type I [Arthrobacter sp. FB24] gi|116611402|gb|ABK04126.1| deoxyribodipyrimidine photo-lyase type I [Arthrobacter sp. FB24] Length = 474 Score = 252 bits (644), Expect = 9e-65, Method: Compositional matrix adjust. Identities = 163/483 (33%), Positives = 241/483 (49%), Gaps = 30/483 (6%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M +VWLR+DLR+ DN AL A + V+I E + +++ SL+ Sbjct: 1 MPSTIVWLRDDLRLDDNPALADAAAMGHPLTV-VYILDEESPGVRPLGGAAKWWLHHSLV 59 Query: 67 QVQKSLSQKG--IVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLE 124 + L G +V + + + + T L +NR+Y E D ++ Sbjct: 60 SLAGGLEAAGSRLVLRRGSAAGI------IQELAAETGATHLRWNRRYGGPERSIDAGVK 113 Query: 125 KRLQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQN----LVQADLRSLPV 179 + + SF S++ P ++ A YKV+TPF +A +++ + +LP Sbjct: 114 AWAGEQGLDAASFQASLMFEPWTVRTGAGGPYKVFTPFWRACLESGEPRIPSDGPGTLPH 173 Query: 180 PAIRLTGPVTPSN-------IPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVE 232 PA G S+ +PR D+ + P GE A L+ F V Y Sbjct: 174 PAGHGDGGPPQSDDLDSWALLPRTPDWSAGLAEQWTP-GEAGAHSRLKDFLDGPVEEYGT 232 Query: 233 QRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYR 292 RD P ++GTS+LSP+L G +SP + W+ L+E F G F +EL WREF Sbjct: 233 GRDRPGVEGTSRLSPHLRFGEISPFRIWHALRERFP-RQAPADVGIFR--SELGWREFCW 289 Query: 293 HLMAFYPSVCMGKPFIPWTEKIEWNKDSHL-LQAWKQGYTGFPIIDAAMRQLNTIGWMHN 351 L+ P + + + P ++ EW S L+AW+QG TG+P++DA MRQL GWMHN Sbjct: 290 QLLYENPELAS-RNYRPDFDRFEWQTPSDAELEAWQQGRTGYPLVDAGMRQLWQTGWMHN 348 Query: 352 RLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNP 411 R+RM ASFLVK+LL DWR+GE +F L+D D ASN WQW A +G D+ PYFRIFNP Sbjct: 349 RVRMAAASFLVKNLLADWRLGEAWFWDTLVDADSASNPANWQWVAGSGADASPYFRIFNP 408 Query: 412 TIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTL 471 Q K+FD G ++R ++PE+ N+ + IH P +L+ YP P+V ++ L Sbjct: 409 VTQSKKFDAAGRYLREFIPEIANLSEKEIHEP---WKAPELAAGYPEPLVGLPESRERAL 465 Query: 472 NQY 474 Y Sbjct: 466 ETY 468 >gi|115525443|ref|YP_782354.1| deoxyribodipyrimidine photolyase [Rhodopseudomonas palustris BisA53] gi|115519390|gb|ABJ07374.1| Deoxyribodipyrimidine photo-lyase type I [Rhodopseudomonas palustris BisA53] Length = 483 Score = 252 bits (643), Expect = 1e-64, Method: Compositional matrix adjust. Identities = 156/485 (32%), Positives = 234/485 (48%), Gaps = 28/485 (5%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 LVW R+DLR++D+ AL AA +S V+ +++ + + ++ SL +Q+ Sbjct: 10 LVWFRDDLRLSDHPALNAAA-SSGRPVLCLYVLDEQSPGGRPLGGAARWWLAQSLRSLQQ 68 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRR--DKLLEKRLQ 128 LS++G + + + + + + ++YN + R +L Sbjct: 69 ILSERGATLMLRRGA----AAQVVAGLARETNAEVVYYN-DIAMAPARTVAAELAATLAD 123 Query: 129 HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188 H + +L P +I + +V+TPF K ++ A P+PA GP Sbjct: 124 HGIAVHQHPGDLLAAPETIRTKEGRGLRVFTPFWKRVLSLGDPAK----PLPAPTALGPP 179 Query: 189 TPSNIPRFFDYPFQAIDP--------MFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ 240 + R D+ + P + GE A L F + Y RD P Sbjct: 180 PAAASDRLDDWALEPTAPDWAGGLRAAWQPGEAAAQRALTDFLTTGIAGYAGDRDRPDRP 239 Query: 241 GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPS 300 GTS LSP+L G + PRQ W+ + +L+EL WREF RHL+ F S Sbjct: 240 GTSLLSPHLRFGEIGPRQIWHAARFAAAARPAI-AGDVDKFLSELGWREFCRHLL-FDHS 297 Query: 301 VCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASF 360 + P + W +D L+AW++G TG+PI+DA MRQL G MHNR+RM+ ASF Sbjct: 298 DLATRNLQPAFDAFPWVEDPAGLRAWQRGLTGYPIVDAGMRQLWQTGVMHNRVRMVVASF 357 Query: 361 LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDP 420 LVK LL+DWR GE++F L+D D SN G WQW A G D+ PYFR+FNP +QG++FDP Sbjct: 358 LVKHLLIDWRCGEQWFWDTLVDADAGSNPGNWQWVAGCGADAAPYFRVFNPILQGEKFDP 417 Query: 421 QGTFIRHWLPELNNVPTQYIHAPHSWLDKN------DLSLNYPLPIVDHKKACHHTLNQY 474 G ++R ++PEL +P IH P + L NYP PI++H++ L Y Sbjct: 418 DGAYVRRFVPELARLPAALIHQPWTATPLELASAGVQLGHNYPEPIIEHRRGRERALAAY 477 Query: 475 YAAKK 479 +K Sbjct: 478 ATVRK 482 >gi|195995781|ref|XP_002107759.1| hypothetical protein TRIADDRAFT_18352 [Trichoplax adhaerens] gi|190588535|gb|EDV28557.1| hypothetical protein TRIADDRAFT_18352 [Trichoplax adhaerens] Length = 503 Score = 251 bits (642), Expect = 1e-64, Method: Compositional matrix adjust. Identities = 175/508 (34%), Positives = 254/508 (50%), Gaps = 51/508 (10%) Query: 3 ATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIY 62 +++ + LVWLR DLR+ DN AL+ A + +F R+ G + ++Y Sbjct: 2 SSSKIPCTLVWLRQDLRLIDNPALFHAAKRGQLITVYIFDEDCSGKRRTGQACL--WWLY 59 Query: 63 ASLLQVQKSLSQKGIVFQYHQCSN-FDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDK 121 SL ++ LSQ I + F E LDSY +++NR YE E RD Sbjct: 60 HSLKSLRNQLSQWNIPLIVKSGKDAFTILKELLDSY----NADAIYWNRCYEPFEYNRDC 115 Query: 122 LLEKRLQ-HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVP 180 +E++L+ V +++ D VL P +I ++Y F + SLP P Sbjct: 116 SIEEKLKMENVTVETYQDRVLFEPWTIKTAKGGPVQIYVHFWNQCL---------SLPQP 166 Query: 181 AI--------RLTGPVTPSNIPRFF--------DYPFQAIDPMFPIGEQNALHILRKFCK 224 TG + + P + D P + D P GE+ A+ L+ F K Sbjct: 167 RKPYDKPKFKNQTGCQSKCDEPAVWQRLAKLSQDMPMKLQDFWHP-GEEQAISKLKSFIK 225 Query: 225 EKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDL---LIKPKSGAFSW 281 + Y E+ + TS LSPYL G +SP W+ ++ +K +S + Sbjct: 226 NSLNAYAEKSQCLRLNTTSNLSPYLHFGEISPFTVWHSVRHASSSAEPPAVKSESLK-QY 284 Query: 282 LNELIWREFYRHLMAFYPSV---CMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDA 338 L L WRE+ HL+ YP + C F E+++ D LQ+W+QG TG+P++DA Sbjct: 285 LRSLGWREYTCHLLFHYPDLPQKCFRSSF----EQLKLQVDPVKLQSWQQGNTGYPVVDA 340 Query: 339 AMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAAST 398 MRQL+ G M NRLRMI ASFL+K LLV W+ GEE+F S+L+D DLA N WQWAA + Sbjct: 341 GMRQLSVAGIMPNRLRMIVASFLIKHLLVPWQKGEEWFWSKLIDADLAQNAFNWQWAAGS 400 Query: 399 GNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIH----APHSWLDKNDLSL 454 G ++ PYFR+FNP QG++FD G ++R W+PEL +P YIH AP + L K ++ L Sbjct: 401 GPNACPYFRVFNPITQGEKFDADGYYVRKWIPELAALPNAYIHKPWEAPSTVLKKANIVL 460 Query: 455 N--YPLPIVDHKKACHHTLNQYYAAKKQ 480 YP PIV HK A L + K++ Sbjct: 461 GKTYPRPIVQHKAARELALATFGQTKRK 488 >gi|260436423|ref|ZP_05790393.1| deoxyribodipyrimidine photo-lyase [Synechococcus sp. WH 8109] gi|260414297|gb|EEX07593.1| deoxyribodipyrimidine photo-lyase [Synechococcus sp. WH 8109] Length = 477 Score = 251 bits (642), Expect = 1e-64, Method: Compositional matrix adjust. Identities = 172/473 (36%), Positives = 233/473 (49%), Gaps = 34/473 (7%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPE--QWRQH--GISARQSHFIYASLL 66 L W R DLR+ DN L AA S A V V++ P+ +H ++ + F+ SL+ Sbjct: 7 LFWHRRDLRLADNLGLVAATDISPA-VTGVYVLDPQLINPTEHLPPMAPARLWFLIESLV 65 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 ++Q+ + G + D + L Q + ++R E RD+ + K+ Sbjct: 66 ELQQRWREAGSRLLVVK----GDPVAVLPQLAQQIGAEAVVWSRDVEPYARERDRQVAKK 121 Query: 127 LQHRVICKSFD-DSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185 LQ D D +L+ P + Y+VY PF ++N L P T Sbjct: 122 LQADGRKVVVDWDQLLIAPELLKTGGGDPYRVYGPF----LRNWRGQVLAKQPSTVAAPT 177 Query: 186 GPVT--PSNIPRF---------FDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQR 234 G V P+ +P + I P P GE AL L FC + Y R Sbjct: 178 GLVDLDPAQLPALESLEALRESHGFKGAEICPCRP-GEAAALAQLNSFCDGPLLAYEPDR 236 Query: 235 DIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFS-WLNELIWREFYRH 293 + P GTS LS LS+G LSPRQ W ++ + A + W EL WREFY+ Sbjct: 237 NFPGTAGTSYLSAALSVGTLSPRQAWCAAQDSREQARSEEHLQAIAVWEQELGWREFYQQ 296 Query: 294 LMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRL 353 + +P + G P+ + W + WK+G TG PIIDAAMRQLN GWMHNR Sbjct: 297 ALFHFPELADG-PYREKWHRFPWENNEDWFDFWKEGQTGMPIIDAAMRQLNQTGWMHNRC 355 Query: 354 RMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTI 413 RMI AS+LVKDL+ DWR GE FM +DGDLA+NNGGWQW+AS+G D P RIFNP Sbjct: 356 RMIVASYLVKDLICDWRWGERAFMELEVDGDLAANNGGWQWSASSGMDPKP-LRIFNPAT 414 Query: 414 QGKRFDPQGTFIRHWLPELNNVPTQ-YIHAPHSWLDKNDLSLNYPLPIVDHKK 465 Q +FD G +IR W+PEL +V T+ + L++ D YP P+VDHKK Sbjct: 415 QASKFDSAGDYIRQWVPELRHVNTKDLLSGEIGALERRD----YPEPLVDHKK 463 >gi|33860843|ref|NP_892404.1| putative DNA photolyase [Prochlorococcus marinus subsp. pastoris str. CCMP1986] gi|33633785|emb|CAE18744.1| putative DNA photolyase [Prochlorococcus marinus subsp. pastoris str. CCMP1986] Length = 478 Score = 251 bits (642), Expect = 1e-64, Method: Compositional matrix adjust. Identities = 176/478 (36%), Positives = 247/478 (51%), Gaps = 45/478 (9%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 L W R DLRI DN+AL A SDA + + +I S+R + F+ SL ++ Sbjct: 7 LFWHRKDLRIFDNQALIKAFSLSDA-ITSTYIFDKNYSHDFNASSR-AWFLGNSLQELGN 64 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130 + + G + D + + + +F+NR E E+ RD ++ L+ + Sbjct: 65 NWKKMGSRLVLEE----GDPVLIIPQLAKKIDAKFVFWNRSIEPYEINRDLEIKNNLKEQ 120 Query: 131 VI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQ--NLVQA-------------DL 174 I D +L+ P I + Y VY PF K L NL+ + D Sbjct: 121 NIQVIETWDHLLIEPLKIFSGNNNPYSVYGPFYKNLKSKINLLGSFEQDKVVFQFKDIDN 180 Query: 175 RSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEK-VYYYVEQ 233 + AI + V I + +P I P P GE A +L F EK +Y Y Sbjct: 181 KFKENKAINSSDSVLEKFI-KNIKFPGSNICPCRP-GENAAQTLLENFINEKKIYSYNSA 238 Query: 234 RDIPAIQGTSQLSPYLSIGVLSPRQCWN---RLKEEFVD----LLIKPKSGAFSWLNELI 286 RD P+ GTS LS L G +S R+ WN L +F + L I+ +W EL+ Sbjct: 239 RDFPSHNGTSFLSASLRFGTISIRKVWNATLNLNSDFANQENYLSIE------TWQKELV 292 Query: 287 WREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTI 346 WREFY+H + +P + G P+ + W ++ L Q W G TG PI+DAAMRQLN+ Sbjct: 293 WREFYQHCLFHFPELEKG-PYRKKWDHFPWQNNNELFQHWSNGETGVPIVDAAMRQLNST 351 Query: 347 GWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYF 406 GWMHNR RMI ASFLVKDL+ W++GE+ FM L+DGDLA+NNGGWQW+AS+G D P Sbjct: 352 GWMHNRCRMIVASFLVKDLICSWQMGEKKFMETLVDGDLAANNGGWQWSASSGMDPKP-L 410 Query: 407 RIFNPTIQGKRFDPQGTFIRHWLPELNNVP-TQYIHAPHSWLDKNDLSLNYPLPIVDH 463 RIFNP Q K+FDP +I++W+PEL+ V ++ ++ S L+KN NY PIV+H Sbjct: 411 RIFNPYTQAKKFDPICEYIKYWIPELSRVSNSELLNGEISNLEKN----NYSSPIVNH 464 >gi|282897058|ref|ZP_06305060.1| DNA photolyase, FAD-binding [Raphidiopsis brookii D9] gi|281197710|gb|EFA72604.1| DNA photolyase, FAD-binding [Raphidiopsis brookii D9] Length = 479 Score = 251 bits (642), Expect = 1e-64, Method: Compositional matrix adjust. Identities = 172/471 (36%), Positives = 240/471 (50%), Gaps = 30/471 (6%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 L W R DLR +DN L A + KV+ VF P Q I+ + ++ L ++ Sbjct: 6 LFWHRRDLRTSDNTGLGVAREKT-KKVVGVFCLDPNILGQDDIAPARITYMIGCLKSLES 64 Query: 71 SLSQKGI-VFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH 129 Q G + H D+ + + + +F+N E RD+ + L+ Sbjct: 65 LYLQAGSQLLILH-----DNPVRAIPNLAEALEAKAVFWNWDVEPYAQIRDRDVTLALKT 119 Query: 130 RVI--CKSFDDSVLLPPGSILNHALQMYKVYTPFRKA------LIQNLVQADLRSLPVPA 181 R I + D +L P +IL+ Y VYTPF K L + A+ +L Sbjct: 120 RGIETLEKNWDQLLHSPETILSGTRTPYTVYTPFWKKWHSQPKLEPIEILANCENLTARE 179 Query: 182 IRLTGPVTPSNIPRFFDYPF-QAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ 240 + +P D F + + GE A L F + Y E+R+ PAI Sbjct: 180 EEIAEKSGVIKLPTARDLGFIWDGELILEPGEVAAWERLTDFLDCAIDEYEEKRNYPAID 239 Query: 241 GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFS-----WLNELIWREFYRHLM 295 GTS LSP L GV+ R W + +E LL S FS W EL WREFY+H M Sbjct: 240 GTSLLSPALKFGVIGIRTIWQKTQE----LLAISNSQEFSNGIITWQKELAWREFYQHAM 295 Query: 296 AFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRM 355 +P + G + + W+ + Q+W +G TG+PI+DAAMRQLN GWMHNR RM Sbjct: 296 YHFPELAEGA-YRDVFKNFPWSDNQDHFQSWCEGKTGYPIVDAAMRQLNETGWMHNRCRM 354 Query: 356 ITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQG 415 I ASFL KDL+++ + GE+YFM +L+DGDL++NNGGWQW+AS+G D P RIFNP+ Q Sbjct: 355 IVASFLTKDLIINPQWGEKYFMQKLIDGDLSANNGGWQWSASSGMDPKP-LRIFNPSSQA 413 Query: 416 KRFDPQGTFIRHWLPELNNVPTQY-IHAPHSWLDKNDLSLNYPLPIVDHKK 465 ++FD G +IRHW+ EL +V T+Y I + L++ L YP PIVDHKK Sbjct: 414 QKFDGDGEYIRHWVGELASVDTEYLIGGNITPLERQ--GLGYPPPIVDHKK 462 >gi|221215267|ref|ZP_03588233.1| deoxyribodipyrimidine photo-lyase (DNA photolyase)(Photoreactivating enzyme) [Burkholderia multivorans CGD1] gi|221164951|gb|EED97431.1| deoxyribodipyrimidine photo-lyase (DNA photolyase)(Photoreactivating enzyme) [Burkholderia multivorans CGD1] Length = 554 Score = 251 bits (641), Expect = 2e-64, Method: Compositional matrix adjust. Identities = 162/471 (34%), Positives = 232/471 (49%), Gaps = 32/471 (6%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 MSV +V R DLR++D+ AL AAC DA V+ V++ P++ A +++ SL Sbjct: 79 MSVAIVLFRRDLRLSDHPALSAACARHDA-VLPVYVHAPDEDTAWAPGAASRWWLHHSLT 137 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 + ++L Q+G Q H D +I + +++ R+YE + D L+ Sbjct: 138 SLDRALRQQGA--QLHVMEG-DPTIA-VPMLARAVGAQAVYWTRRYEPTAIACDTALKTT 193 Query: 127 LQHRVICK-SFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185 L+ I S ++ P ++ A Q Y+V+TPF + L +L P+PA R Sbjct: 194 LRAEGIAAHSHPGALWQEPWTLTTEAGQPYRVFTPFWRKLRTSLSDCH----PLPAARPR 249 Query: 186 GPVTPSNIPRFFDYPFQAIDPMFPI------------GEQNALHILRKFCKEKVYYYVEQ 233 +T P AI + PI GE A L +F E + Y + Sbjct: 250 RWLTADG-----SIPIDAIGLLPPIRWDAGLAEAWRPGEAGAWERLEQFVDEALAEYGDA 304 Query: 234 RDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRH 293 RD PA GTS+LS +L G ++P Q L+E + +L EL WREF H Sbjct: 305 RDAPARMGTSRLSAHLHFGEITPTQMLRTLQERVARTSDSDRPDLEPFLRELGWREFAHH 364 Query: 294 LMAFYPSVCMGKPFIPWTEKIEWN-KDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNR 352 L+ +P F + W D L W+QG TG P++DA MRQL GWMHNR Sbjct: 365 LLYHFPHTTDAN-FDARFDTFAWAPDDDDQLARWQQGRTGIPLVDAGMRQLWQTGWMHNR 423 Query: 353 LRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPT 412 +RM ASFL K+L WR G +F L+D DLA+N GWQW A G D+ PYFR+FNP Sbjct: 424 VRMAVASFLTKNLRQHWRHGARWFWDTLVDADLANNTLGWQWVAGCGADAAPYFRVFNPY 483 Query: 413 IQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSL-NYPLPIVD 462 +Q RFDP +++ WLPEL+ +P +H P W L++ YP P++D Sbjct: 484 LQAARFDPDAAYLKRWLPELSGLPADVLHRP--WKHPAALAVCGYPAPMID 532 >gi|170703393|ref|ZP_02894172.1| Deoxyribodipyrimidine photo-lyase [Burkholderia ambifaria IOP40-10] gi|170131701|gb|EDT00250.1| Deoxyribodipyrimidine photo-lyase [Burkholderia ambifaria IOP40-10] Length = 505 Score = 251 bits (641), Expect = 2e-64, Method: Compositional matrix adjust. Identities = 158/493 (32%), Positives = 249/493 (50%), Gaps = 31/493 (6%) Query: 1 MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHF 60 M A ++++ +VW R+DLR+TD AL A S ++ V++ + + + Sbjct: 1 MSAKSSVAPAVVWFRDDLRVTDQPALTRAV-ASGRPLVCVYLDDTGEGAGRALGGAARWW 59 Query: 61 IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120 ++ SL + +L++ G + D+ ++ +++NR+Y + D Sbjct: 60 LHGSLAALDAALARHGGRLLLLRG----DAQREIERVVHDTGAAAVYWNRRYAQPQRDAD 115 Query: 121 KLLEKRLQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPV 179 L+ L+ R + +S + S+L P ++ A ++++T + +A+ ++ A LP Sbjct: 116 AALKATLKARGLEVESSNGSLLNEPWEVMTGAGTPFQIFTAYWRAVRRDRTVA--APLPE 173 Query: 180 PAIRLTGPVTPSNIPRFFDYPFQAIDP-----------MFPIGEQNALHI-LRKFCKEKV 227 P P R A+ P +P ++ H L F + Sbjct: 174 PERIAFHPWPAGMRERALALDTLALRPHAPDWAGGLRDAWPTPDEAGAHAGLDAFVHASL 233 Query: 228 YYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIW 287 Y + RD P TS+LSP+L G +SPRQ W+ ++ +GA +L+EL W Sbjct: 234 AGYADSRDRPGQPATSRLSPFLRFGNVSPRQVWHAVQGAAQAGGAACAAGAEKFLSELGW 293 Query: 288 REFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIG 347 REF L+ +P++ F + + W D L+AW++G TG+P++DA MR+L T G Sbjct: 294 REFSHVLLYHFPALATDN-FRAQFDAMPWRDDPAALRAWQRGLTGYPLVDAGMRELWTTG 352 Query: 348 WMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFR 407 WMHNR+RM+ ASFLVK LL+DWR+GE +F L+D D A+N WQW A G D+ PYFR Sbjct: 353 WMHNRVRMVVASFLVKHLLIDWRVGERWFHDTLVDADAANNPANWQWVAGCGADAAPYFR 412 Query: 408 IFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND--------LSLNYPLP 459 IFNP QG++FDPQG ++R W+PEL + IHAP W L+L+YP P Sbjct: 413 IFNPVTQGRKFDPQGAYVRRWVPELAGLDAAAIHAP--WEASTAQLAAAGVRLALDYPAP 470 Query: 460 IVDHKKACHHTLN 472 IVDH A L+ Sbjct: 471 IVDHDGARRRALD 483 >gi|161521234|ref|YP_001584661.1| deoxyribodipyrimidine photo-lyase [Burkholderia multivorans ATCC 17616] gi|189352592|ref|YP_001948219.1| deoxyribodipyrimidine photo lyase [Burkholderia multivorans ATCC 17616] gi|160345284|gb|ABX18369.1| Deoxyribodipyrimidine photo-lyase [Burkholderia multivorans ATCC 17616] gi|189336614|dbj|BAG45683.1| deoxyribodipyrimidine photo lyase [Burkholderia multivorans ATCC 17616] Length = 476 Score = 251 bits (641), Expect = 2e-64, Method: Compositional matrix adjust. Identities = 161/468 (34%), Positives = 237/468 (50%), Gaps = 26/468 (5%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 MSV +V R DLR++D+ AL AAC DA V+ V++ TP++ A +++ SL Sbjct: 1 MSVAIVLFRRDLRLSDHPALSAACARHDA-VLPVYVHTPDEDAIWSPGAASRWWLHHSLT 59 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 + ++L ++G Q D +I + + +++ R+YE + RD L+ Sbjct: 60 SLDRALREQGGRLLAMQS---DPTIA-VPALARAVDAQGVYWTRRYEPAAIARDAALKST 115 Query: 127 LQHRVICK-SFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185 L+ + I S+ ++ P ++ A Q Y+V+TPF + L +L P+PA R Sbjct: 116 LRAQGIAAHSYPGALWQEPWTLATDAGQPYRVFTPFWRKLRTSLSDCH----PLPAARPR 171 Query: 186 GPVTPSN---------IPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDI 236 +T + +PR + D P GE A L +F E + Y + RD Sbjct: 172 RWMTTDDSTAVEALGLLPRI-RWDAGLADAWRP-GEGGAWERLEQFVDEALAEYGDARDA 229 Query: 237 PAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMA 296 PA GTS+LS +L G ++P Q L+E + +L EL WREF HL+ Sbjct: 230 PARLGTSRLSAHLHYGEITPTQILRTLQERVARTSGSVRPDLEPFLRELGWREFAHHLLY 289 Query: 297 FYPSVCMGKPFIPWTEKIEWN-KDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRM 355 +P F + W D L W+QG TG P++DA MRQL GWMHNR+RM Sbjct: 290 HFPHTTDAN-FDARFDAFAWAPDDGEQLARWQQGRTGIPLVDAGMRQLWQTGWMHNRVRM 348 Query: 356 ITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQG 415 + ASFL K+L WR G +F L+D DLA+N GWQW A G D+ PYFR+FNP +Q Sbjct: 349 VVASFLTKNLRQHWRHGARWFWDTLVDADLANNTLGWQWVAGCGADAAPYFRVFNPYLQA 408 Query: 416 KRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDL-SLNYPLPIVD 462 +FDP +++ WLPEL+ +P +H P W L + YP P+VD Sbjct: 409 AKFDPDAAYLKRWLPELSRLPADVLHRP--WKHSAALAACGYPTPMVD 454 >gi|163756034|ref|ZP_02163150.1| deoxyribodipyrimidine photolyase-class I [Kordia algicida OT-1] gi|161323908|gb|EDP95241.1| deoxyribodipyrimidine photolyase-class I [Kordia algicida OT-1] Length = 433 Score = 251 bits (641), Expect = 2e-64, Method: Compositional matrix adjust. Identities = 161/472 (34%), Positives = 231/472 (48%), Gaps = 53/472 (11%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 L W R DLRI DN LY A NS KVI +FI + + + FIY L ++ Sbjct: 7 LFWHRRDLRIEDNIGLYHAL-NSGKKVIPLFIFDSDILEKLPKDDARVTFIYEELEKINT 65 Query: 71 SLSQKGIVFQYHQCS---NFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127 +L Q H S +E L+ + ++ ++ N YE + RDK + + L Sbjct: 66 TL-------QSHDASILVKHGKPLEVLEEIIGKHEISAVYTNHDYEPYAIARDKEVGELL 118 Query: 128 QHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 + I K++ D V+ ++ Y +YTP+ K + L + D S+ + Sbjct: 119 ASKNIEFKTYKDQVIFERNEVVKADGDPYIIYTPYSKKWLDKLTKNDYTSVDCASYYKNY 178 Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHIL-RKFCKEKVYYYVEQRDIPAIQGTSQL 245 N P D F A +++ +L + + Y + R+ PAI+GTS+L Sbjct: 179 AKKSFNFPSLKDIGFTA----------SSIKVLPYTMAENMIDNYEDTRNFPAIEGTSRL 228 Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305 SP+L G +S R+C V ++ ++ F L EL+WREF+ ++ +P Sbjct: 229 SPHLRFGTISVRKC--------VQNGLQSENNVF--LKELVWREFFMQILWHFPKSVTNN 278 Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365 F + I+W D +AW +G TG+P++DA MR+LN G+MHNR+RMITASFL K L Sbjct: 279 -FKSKYDGIKWRNDEDEYKAWCEGKTGYPLVDAGMRELNESGYMHNRVRMITASFLCKHL 337 Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425 L+DW+ GE YF +LLD DLA N G WQW A TG DS PYFRIFNPT Q K+FD T+I Sbjct: 338 LIDWKWGEAYFAKKLLDFDLAQNVGNWQWVAGTGCDSSPYFRIFNPTSQIKKFDKDHTYI 397 Query: 426 RHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477 W + L YP PIV+HK A L+ Y + Sbjct: 398 NKWASDYQ-------------------ELTYPSPIVEHKFARERCLSTYKSG 430 >gi|56751401|ref|YP_172102.1| DNA photolyase [Synechococcus elongatus PCC 6301] gi|118595452|sp|P05327|PHR_SYNP6 RecName: Full=Deoxyribodipyrimidine photo-lyase; AltName: Full=DNA photolyase; AltName: Full=Photoreactivating enzyme gi|56686360|dbj|BAD79582.1| DNA photolyase [Synechococcus elongatus PCC 6301] Length = 484 Score = 251 bits (641), Expect = 2e-64, Method: Compositional matrix adjust. Identities = 170/481 (35%), Positives = 237/481 (49%), Gaps = 26/481 (5%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 L W R DLR++DN L AA S A++I +F P+ + ++ + ++ L ++Q+ Sbjct: 6 LFWHRRDLRLSDNIGLAAARAQS-AQLIGLFCLDPQILQSADMAPARVAYLQGCLQELQQ 64 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130 Q G Q D + Q + +++N+ E RD + L+ Sbjct: 65 RYQQAGSRLLLLQ----GDPQHLIPQLAQQLQAEAVYWNQDIEPYGRDRDGQVAAALKTA 120 Query: 131 VI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQN------LVQADLRSLPVPAIR 183 I D +L P IL+ + Y VY PF K +L L + Sbjct: 121 GIRAVQLWDQLLHSPDQILSGSGNPYSVYGPFWKNWQAQPKPTPVATPTELVDLSPEQLT 180 Query: 184 LTGPVTPSNIPRFFDYPFQAIDPMFPI--GEQNALHILRKFCKEKVYYYVEQRDIPAIQG 241 P+ S +P F D FP+ GE A+ L++FC + Y QR+ PA G Sbjct: 181 AIAPLLLSELPTLKQLGFD-WDGGFPVEPGETAAIARLQEFCDRAIADYDPQRNFPAEAG 239 Query: 242 TSQLSPYLSIGVLSPRQCWNRLKEEF-VDLLIKPKSGAFSWLNELIWREFYRHLMAFYPS 300 TS LSP L G + RQ W + + ++ W EL WREFY+H + +PS Sbjct: 240 TSGLSPALKFGAIGIRQAWRAASAAHALSRSDEARNSIRVWQQELAWREFYQHALYHFPS 299 Query: 301 VCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASF 360 + G P+ ++ W L AW Q TG+PI+DAAMRQL GWMHNR MI ASF Sbjct: 300 LADG-PYRSLWQQFPWENREALFTAWTQAQTGYPIVDAAMRQLTETGWMHNRCWMIVASF 358 Query: 361 LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDP 420 L KDL++DWR GE++FM L+DGDLA+NNGGWQW+AS+G D P RIFNP Q K+FD Sbjct: 359 LTKDLIIDWRRGEQFFMQHLVDGDLAANNGGWQWSASSGMDPKP-LRIFNPASQAKKFDA 417 Query: 421 QGTFIRHWLPELNNV-PTQYIHAPHSWLDKNDLSLNYPLPIVDH---KKACHHTLNQYYA 476 T+I+ WLPEL +V P I + + + YP PIV+H +K NQ A Sbjct: 418 TATYIKRWLPELRHVHPKDLISGEITPIGRR----GYPAPIVNHNLRQKQFKALYNQLKA 473 Query: 477 A 477 A Sbjct: 474 A 474 >gi|86749484|ref|YP_485980.1| deoxyribodipyrimidine photolyase [Rhodopseudomonas palustris HaA2] gi|86572512|gb|ABD07069.1| Deoxyribodipyrimidine photo-lyase type I [Rhodopseudomonas palustris HaA2] Length = 487 Score = 251 bits (640), Expect = 2e-64, Method: Compositional matrix adjust. Identities = 165/485 (34%), Positives = 245/485 (50%), Gaps = 34/485 (7%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIAT-------PEQWRQHGISARQSHFIYA 63 +VW R+DLR++D+ AL+AA S + +I +++ P Q R G +AR ++ Sbjct: 10 IVWFRDDLRLSDHPALHAAA-ASGSPLICIYVHDEQSPQLRPPQARPIGGAARW--WLAQ 66 Query: 64 SLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRR--DK 121 SL + L Q+G + + + Q + +N + EI R D Sbjct: 67 SLRALAAELEQRGARLILRRGP----AAAIVGELARQVDAAAVHWN-EIEIAPHRAIADD 121 Query: 122 LLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPA 181 L E + +L+ P I + +V+TPF + ++ + + LP PA Sbjct: 122 LAETLSMSGIDHHRHPGDLLVAPSEIRTKDGRGLRVFTPFWRRVLG--LGDPPKPLPAPA 179 Query: 182 IRLTGPVTPSNIPRFFDYPFQAID------PMFPIGEQNALHILRKFCKEKVYYYVEQRD 235 + GP S+ P + A D + GE+ A +L F +++ Y RD Sbjct: 180 MLRAGPDIASDDPATWQLEPTAPDWAGGLRASWTPGERAAHDLLTAFL-DRLPGYAADRD 238 Query: 236 IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLM 295 P TS LSP+L G +SPRQ W + + +L+EL WREF RHL+ Sbjct: 239 RPDRDATSLLSPHLRFGEISPRQLWYAARFAAAKRPAI-AADIDKFLSELGWREFCRHLL 297 Query: 296 AFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRM 355 +P + + + W +D L AW++G TG+PI+DA MRQL G MHNR+RM Sbjct: 298 HDHPDLAE-RNLQSAFDAFPWTRDDAALAAWQRGRTGYPIVDAGMRQLWHTGVMHNRIRM 356 Query: 356 ITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQG 415 + ASFLVK LL+DWR+GEE+F L+D D SN G WQW A +G D+ PYFR+FNP +QG Sbjct: 357 VVASFLVKHLLIDWRLGEEWFWDTLVDADPGSNPGNWQWVAGSGADAAPYFRVFNPILQG 416 Query: 416 KRFDPQGTFIRHWLPELNNVPTQYIHAP--HSWLDKN----DLSLNYPLPIVDHKKACHH 469 ++FDP G ++R W+PE+ +P ++IH P + L++ L NYP PIVDHK Sbjct: 417 EKFDPAGDYVRRWVPEIAALPNKFIHQPWTATLLERAAAGVALGGNYPAPIVDHKVGRAR 476 Query: 470 TLNQY 474 L Y Sbjct: 477 ALAAY 481 >gi|91762930|ref|ZP_01264895.1| Deoxyribodipyrimidine photolyase (DNA photolyase) (Photoreactivating enzyme) [Candidatus Pelagibacter ubique HTCC1002] gi|91718732|gb|EAS85382.1| Deoxyribodipyrimidine photolyase (DNA photolyase) (Photoreactivating enzyme) [Candidatus Pelagibacter ubique HTCC1002] Length = 473 Score = 251 bits (640), Expect = 2e-64, Method: Compositional matrix adjust. Identities = 161/492 (32%), Positives = 252/492 (51%), Gaps = 48/492 (9%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 +VW+R D RI N+AL A N + V A++I P+ + + Q ++ SL + Sbjct: 6 IVWIREDFRIEYNEALATATQNHEY-VSAIYIYNPKNFDKK--REAQKWWLSKSLENLSI 62 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR-LQH 129 L + I + D +E L + VT +++++ YE + + + K + +++ Sbjct: 63 DLKKLNITLEVQ----LGDELEVLSILKKKDDVT-VYWSKVYEPDVINKGKKIRDLFIKN 117 Query: 130 RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189 + K F ++L+ + YKV+TPF K Q+ + P IR+ + Sbjct: 118 EIQYKYFKGNILIEFQEMTKDDGTPYKVFTPFWKKTEQHYIS----KAPSKLIRVKSKIK 173 Query: 190 PSNI------------PRFFDYPFQAI-DPMFPIGEQNALHILRKFCKEKVYYYVEQRDI 236 NI + + F+ DP E+ A L++ K+ Y + RDI Sbjct: 174 KINIFKNSISIKEILPKKNWHKKFEKYWDP----SEKEAKKYLQELINNKIEDYGDARDI 229 Query: 237 PAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMA 296 P + GTS+LSP+L G + W + + D+ +K K G ++NEL WREF L+ Sbjct: 230 PGVNGTSKLSPFLKFGQIHVETIWKKCQ----DIKVK-KIGYRKYINELGWREFSHSLIN 284 Query: 297 FYPSVCMG---KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRL 353 ++P + G K F + W K+ L+AWK G TG+PI+DA MR+L GWMHNR+ Sbjct: 285 YFPQMLKGNLRKDF----DNFPWVKNDKFLKAWKAGMTGYPIVDAGMRELYETGWMHNRV 340 Query: 354 RMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTI 413 RMI ASFLVK L + W GE++F + L+D + ASN WQW A G D+ PYFRIFNP + Sbjct: 341 RMIVASFLVKHLRIHWMEGEKHFKNCLVDYNEASNVAQWQWVAGCGADAAPYFRIFNPIL 400 Query: 414 QGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND------LSLNYPLPIVDHKKAC 467 QG++FD G + + W+PEL N+P ++++ P K + +NYP PIVDH +A Sbjct: 401 QGEKFDKAGIYTKKWVPELKNMPNKFLYKPWELETKYQEQIKVIVGINYPKPIVDHVEAR 460 Query: 468 HHTLNQYYAAKK 479 + L+ + KK Sbjct: 461 NAALDAFKTIKK 472 >gi|91217400|ref|ZP_01254360.1| deoxyribodipyrimidine photolyase-class I [Psychroflexus torquis ATCC 700755] gi|91184508|gb|EAS70891.1| deoxyribodipyrimidine photolyase-class I [Psychroflexus torquis ATCC 700755] Length = 457 Score = 251 bits (640), Expect = 3e-64, Method: Compositional matrix adjust. Identities = 158/474 (33%), Positives = 227/474 (47%), Gaps = 47/474 (9%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 V + W R D+R+ DN LY A + V+ +FI + + FI+ L ++ Sbjct: 27 VRVFWFRRDMRLEDNVGLYHALSGVFS-VVPLFIFDKNILNELQEDDARISFIFEQLQKM 85 Query: 69 QKSLSQ--KGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 + L + YH E V ++ NR YE +RD + Sbjct: 86 RSHLQDHYGSSIATYHSTPE-----EAFHELLKDFEVEAVYTNRDYEPYAHQRDSKINTL 140 Query: 127 LQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185 L ++ I F D V+ + + MY V+TP+ + + DL++ P L Sbjct: 141 LANQGIEFHDFKDQVIFEKTEVEKNDGGMYLVFTPYMRQWKKEFENIDLKTFPSED-HLD 199 Query: 186 GPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245 S +P + + + N K+ + +Y + R+IP+I+GTS+L Sbjct: 200 NTYKNSMLPDVSLSDMGFVKSSIQVPDYN-------ITKDLLEHYEDTRNIPSIEGTSRL 252 Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305 SPYL G++ R+ + + K+ F LNELIWREFY+ ++ +P Sbjct: 253 SPYLRFGLIGYRKL--------IQAALSVKNETF--LNELIWREFYKAILYNHPK-TQNS 301 Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365 F P ++IEW D + + WK+G TG+PI+DA MRQLN GWMHNRLRM+ SFL K L Sbjct: 302 AFKPKYDRIEWRNDENEFEKWKKGKTGYPIVDAGMRQLNETGWMHNRLRMVVGSFLCKHL 361 Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425 L+DWR GE YF +LLD +++SN GGWQW A +G D+ PYFRIFNP Q RFD +I Sbjct: 362 LIDWRWGEAYFAEKLLDYEMSSNVGGWQWVAGSGVDAAPYFRIFNPYSQTDRFDKDKKYI 421 Query: 426 RHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479 W+PELN + YP P+VDHK A L Y A K Sbjct: 422 MKWIPELN-------------------TDRYPKPMVDHKIARERCLETYKEAVK 456 >gi|254373077|ref|ZP_04988566.1| hypothetical protein FTCG_00652 [Francisella tularensis subsp. novicida GA99-3549] gi|151570804|gb|EDN36458.1| hypothetical protein FTCG_00652 [Francisella novicida GA99-3549] Length = 464 Score = 251 bits (640), Expect = 3e-64, Method: Compositional matrix adjust. Identities = 165/490 (33%), Positives = 254/490 (51%), Gaps = 56/490 (11%) Query: 4 TTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYA 63 + +++H W R DLR+ DN ALY A + I +FI Q GI +++ Sbjct: 2 SKKIAIH--WFRQDLRLADNPALYQASQADE--TITIFILDKNQ----GIGGASKLWLHY 53 Query: 64 SLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLL 123 SL + SL K + + +E + + +T ++NR Y+ + RD + Sbjct: 54 SLNSLNSSLDNKLNFYS-------GNPLEIIRKIIKENNITDFYWNRCYDKYSIDRDTQI 106 Query: 124 EKRLQ-HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQ------NLVQAD--- 173 ++ LQ H++ SF+ S+L+ P YKVYTPF K LI+ N+ + + Sbjct: 107 KQFLQQHKINVNSFNGSLLIEPWQCKKDDGTHYKVYTPFYKELIKIRKYRSNIAKPNFSY 166 Query: 174 LRSLP----VPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYY 229 LR L + +++L P + +Q I + IGE + IL +F KV Sbjct: 167 LRKLNNSENLDSLKLLQP----------KHSWQNIIKQWQIGESASHQILEEFLDNKVKE 216 Query: 230 YVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWRE 289 Y RD + TS+LSPYL G +SP Q +N ++ +D + + ++ EL+WR+ Sbjct: 217 YKTARDFMSTDSTSKLSPYLHFGEISPNQIFNAVQS--LDYI---GNNEEHFIKELVWRD 271 Query: 290 FYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWM 349 F + + +YP + K + +W+ D LL+ W++G TG PI+DA MR+L G+M Sbjct: 272 FSYYQIYYYPEL-HNKNINQKFDSFKWDNDPTLLKKWQKGQTGIPIVDAGMRELWQTGYM 330 Query: 350 HNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIF 409 HNR+RMI ASFL+K+ L+ W+ GE++F L D D ASNN WQW A G D+ PYFRIF Sbjct: 331 HNRVRMIVASFLIKNCLIHWKYGEKWFFDTLFDADFASNNANWQWVAGCGLDAAPYFRIF 390 Query: 410 NPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSW------LDKNDLSL--NYPLPIV 461 NP +Q ++F+ +IR ++PEL +P + I P W L + ++L NYP PIV Sbjct: 391 NPVLQAEKFEAY-EYIRKYVPELKLLPNKLIAKP--WEASELVLQEAGITLGQNYPKPIV 447 Query: 462 DHKKACHHTL 471 D KK+ L Sbjct: 448 DLKKSRDRAL 457 >gi|71084006|ref|YP_266726.1| deoxyribodipyrimidine photo-lyase [Candidatus Pelagibacter ubique HTCC1062] gi|71063119|gb|AAZ22122.1| Deoxyribodipyrimidine photolyase (DNA photolyase) (Photoreactivating enzyme) [Candidatus Pelagibacter ubique HTCC1062] Length = 473 Score = 250 bits (639), Expect = 3e-64, Method: Compositional matrix adjust. Identities = 160/492 (32%), Positives = 252/492 (51%), Gaps = 48/492 (9%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 +VW+R D RI N+AL A N + V A++I P+ + + Q ++ SL + Sbjct: 6 IVWIREDFRIEYNEALATATQNHEY-VSAIYIYNPKNFDKK--REAQKWWLSKSLENLSI 62 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR-LQH 129 L + I + D +E L + VT +++++ YE + + + K + +++ Sbjct: 63 DLKKLNITLEVQ----LGDELEVLSILKKKDDVT-VYWSKVYEPDVINKGKKIRDLFIKN 117 Query: 130 RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189 + K F ++L+ + YKV+TPF K Q+ + P IR+ + Sbjct: 118 EIQYKYFKGNILVEFQEMTKDDGTPYKVFTPFWKKTEQHYIS----KAPSKLIRVKSKIK 173 Query: 190 PSNI------------PRFFDYPFQAI-DPMFPIGEQNALHILRKFCKEKVYYYVEQRDI 236 NI + + F+ DP E+ A L++ K+ Y + RDI Sbjct: 174 KINIFKNSISIKEILPKKNWHKKFEKYWDP----SEKEAKKYLQELINNKIEDYGDARDI 229 Query: 237 PAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMA 296 P + GTS+LSP+L G + W + + D+ +K K G ++NEL WREF L+ Sbjct: 230 PGVNGTSKLSPFLKFGQIHVETIWKKCQ----DIKVK-KIGYRKYINELGWREFSHSLIN 284 Query: 297 FYPSVCMG---KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRL 353 ++P + G K F + W K+ L+AWK G TG+PI+DA MR+L GWMHNR+ Sbjct: 285 YFPQMLKGNLRKDF----DNFPWVKNDKFLKAWKAGMTGYPIVDAGMRELYETGWMHNRV 340 Query: 354 RMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTI 413 RMI ASFLVK L + W GE++F + L+D + ASN WQW A G D+ PYFRIFNP + Sbjct: 341 RMIVASFLVKHLRIHWMEGEKHFKNCLVDYNEASNVAQWQWVAGCGADAAPYFRIFNPIL 400 Query: 414 QGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND------LSLNYPLPIVDHKKAC 467 QG++FD G + + W+PEL N+P ++++ P K + +NYP PI+DH +A Sbjct: 401 QGEKFDKDGIYTKKWVPELKNMPNKFLYKPWELETKYQEQIKVIVGINYPKPIIDHVEAR 460 Query: 468 HHTLNQYYAAKK 479 + L+ + KK Sbjct: 461 NAALDAFKTIKK 472 >gi|22297968|ref|NP_681215.1| DNA photolyase [Thermosynechococcus elongatus BP-1] gi|22294146|dbj|BAC07977.1| DNA photolyase [Thermosynechococcus elongatus BP-1] Length = 480 Score = 250 bits (639), Expect = 3e-64, Method: Compositional matrix adjust. Identities = 168/475 (35%), Positives = 244/475 (51%), Gaps = 31/475 (6%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 MS+ L W R DLR+ DN L AA + KV+ +F P I+A + ++ L Sbjct: 1 MSLRLFWHRRDLRLNDNLGL-AAAYTRTPKVVGLFCFDPAILSASDIAAVRVAYLVGCLQ 59 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 +Q++ + G F + D + L + ++ E RD+ + Sbjct: 60 ALQEAYRRLGGSFLIFR----GDPRQILPQVAKGLGAVAVHWHEDVEPYGRERDRAVAAA 115 Query: 127 LQHRVIC-KSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185 L+ + I ++ D +L PP +I Q Y VY+PF + +L + + S P LT Sbjct: 116 LKEKGIAVETAWDQLLHPPEAIQTKQGQPYTVYSPFWRNW-SSLAKPEPVSAPRHLEPLT 174 Query: 186 -------GPVTPSNIPRFFDYPFQ-AIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIP 237 G + +P D F + D + GE A L F + + Y EQR+ P Sbjct: 175 EIEQATAGTLGAICLPTAKDLGFHWSGDLILAPGEAAAQAQLETFIDQHIQDYGEQRNYP 234 Query: 238 AIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAF-SWLNELIWREFYRHLMA 296 A GTS LSP L GV+ R+ W + + + +W EL WREFY+H + Sbjct: 235 AQPGTSLLSPALKFGVIGIRRVWTATQAAMAAARSEEAQRSIRTWQQELAWREFYQHALY 294 Query: 297 FYPSVCM-----GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHN 351 ++P + G PW N ++H AW +G TG+PI+DAAMRQLN GWMHN Sbjct: 295 WFPHLAERPHREGFATFPWL-----NNEAHFA-AWCEGRTGYPIVDAAMRQLNETGWMHN 348 Query: 352 RLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNP 411 R RMI ASFL KDL+++ + GE YFM +L+DGDLA+NNGGWQW+AS+G D P RIFNP Sbjct: 349 RCRMIVASFLTKDLIINPQWGERYFMQKLIDGDLAANNGGWQWSASSGMDPKP-LRIFNP 407 Query: 412 TIQGKRFDPQGTFIRHWLPELNNVPT-QYIHAPHSWLDKNDLSLNYPLPIVDHKK 465 Q ++FDP+ +IR WLPE+ ++ T + S L+++ YPLPIVDH++ Sbjct: 408 ASQAQKFDPEAEYIRRWLPEVRSLDTIDLVTGNISPLERH--RCGYPLPIVDHRQ 460 >gi|172061140|ref|YP_001808792.1| deoxyribodipyrimidine photo-lyase [Burkholderia ambifaria MC40-6] gi|171993657|gb|ACB64576.1| Deoxyribodipyrimidine photo-lyase [Burkholderia ambifaria MC40-6] Length = 500 Score = 250 bits (639), Expect = 4e-64, Method: Compositional matrix adjust. Identities = 162/489 (33%), Positives = 247/489 (50%), Gaps = 23/489 (4%) Query: 1 MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHF 60 M A ++++ +VW R+DLR+TD AL A S ++ V++ + + Sbjct: 1 MSAKSSVAPAIVWFRDDLRVTDQPALTRAV-ASGRPLVCVYVDDTGDGAGRALGGAARWW 59 Query: 61 IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120 ++ +L + +L++ G + D+ ++ +++NR+Y + D Sbjct: 60 LHGALAALDAALARHGGRLLLLRG----DAQREIERVVHDTGAAAVYWNRRYAQPQRDAD 115 Query: 121 KLLEKRLQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQN-LVQADLRSL- 177 L+ L+ R + +S + S+L P ++ A ++V+T + +A+ ++ LV A L Sbjct: 116 AALKASLKARGLEVESSNGSLLNEPWEVMTGAGTPFQVFTAYWRAVRRDRLVAAPLPEPE 175 Query: 178 -----PVPAI---RLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYY 229 P PA R T + P D+ D E A L F E + Sbjct: 176 RIAFHPWPAAVRERALALNTLALRPHAPDWAGGLRDAWPAPDEAGAHARLDAFVHESLAG 235 Query: 230 YVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWRE 289 Y + RD P TS+LSP+L G +SPRQ W+ ++ +GA +L+EL WRE Sbjct: 236 YADTRDRPGESATSRLSPFLRFGNVSPRQVWHAVQGAAQAGGAACAAGAEKFLSELGWRE 295 Query: 290 FYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWM 349 F L+ +P++ F + + W D L+AW++G TG+P++DA MR+L T GWM Sbjct: 296 FSHVLLYHFPALATDN-FRAQFDAMPWRDDPAALRAWQRGLTGYPLVDAGMRELWTTGWM 354 Query: 350 HNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIF 409 HNR RM+ ASFLVK LL+DWR GE +F L+D D A+N WQW A G D+ PYFRIF Sbjct: 355 HNRARMVVASFLVKHLLIDWRAGERWFHDTLVDADAANNPANWQWVAGCGADAAPYFRIF 414 Query: 410 NPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND------LSLNYPLPIVDH 463 NP QG++FDPQG ++R W+PEL + IHAP L L+YP PIVDH Sbjct: 415 NPVTQGRKFDPQGAYVRRWVPELAGLDAAAIHAPWDASAAQLAAAGVRLGLDYPAPIVDH 474 Query: 464 KKACHHTLN 472 A L+ Sbjct: 475 DGARRRALD 483 >gi|160902458|ref|YP_001568039.1| deoxyribodipyrimidine photo-lyase [Petrotoga mobilis SJ95] gi|160360102|gb|ABX31716.1| Deoxyribodipyrimidine photo-lyase [Petrotoga mobilis SJ95] Length = 462 Score = 250 bits (638), Expect = 4e-64, Method: Compositional matrix adjust. Identities = 156/465 (33%), Positives = 239/465 (51%), Gaps = 30/465 (6%) Query: 14 LRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQS-HFIYASLLQVQKSL 72 R DLR+ DN +L A + + +VI FI Q + + + + F+ A L ++ L Sbjct: 22 FRRDLRLEDNTSLIEALQSCE-RVIPAFIFDDRQIKDNDYKSDNAVQFMIACLKELNDQL 80 Query: 73 SQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ-HRV 131 Q + + + + ++S + +F N+ Y +RD ++ + RV Sbjct: 81 HQLNARLYFFEGL----TAKVVESLIKTLGIEAVFVNKDYTPFSKKRDNEIKAICERERV 136 Query: 132 ICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIR--LTGPVT 189 K D +L P +L Y +T F ++ + D+R + T ++ Sbjct: 137 DFKEHFDVLLHEPTEVLKDNGMPYIKFTDF----LKKSKKIDVREPQKNKFKNYFTEEIS 192 Query: 190 PSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYL 249 S + +P Q + + G + L + + K K Y E R+ P+I GT++LSP+L Sbjct: 193 SSIALQVDKFP-QNENLILKGGRKEGLSYIERIVKLK--NYSETRNTPSIDGTTKLSPHL 249 Query: 250 SIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIP 309 G +S R+ + ++ E F + +L WR+F+ H++ +P V +G F Sbjct: 250 KFGTVSVREVYGKVNENF--------GNEHEIITQLHWRDFFTHILYHFPHV-LGNSFKE 300 Query: 310 WTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDW 369 +I+W D +AW G TG+PI+DA MRQLN GWMHNR+RMIT SFLVKDL +DW Sbjct: 301 KYNQIQWENDVDKFKAWCTGRTGYPIVDAGMRQLNLTGWMHNRVRMITGSFLVKDLHIDW 360 Query: 370 RIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWL 429 R GE+YF +L+D D A NNG WQW ASTG D+ P+FRIFNP +Q ++FDP+ +I+ WL Sbjct: 361 RWGEKYFAQRLVDYDPAINNGNWQWVASTGCDAQPFFRIFNPILQQQKFDPECNYIKTWL 420 Query: 430 PELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQY 474 PEL N+ + IH + D ++YP PIVDHK A Y Sbjct: 421 PELTNLNLEQIHTLNIPKD-----IDYPTPIVDHKVASEKAKKLY 460 >gi|116071567|ref|ZP_01468835.1| Deoxyribodipyrimidine photolyase [Synechococcus sp. BL107] gi|116065190|gb|EAU70948.1| Deoxyribodipyrimidine photolyase [Synechococcus sp. BL107] Length = 477 Score = 249 bits (636), Expect = 6e-64, Method: Compositional matrix adjust. Identities = 168/473 (35%), Positives = 233/473 (49%), Gaps = 26/473 (5%) Query: 6 AMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHG----ISARQSHFI 61 A S L W R DLR+ DN + AA S A V V++ P ++ + F+ Sbjct: 2 AASRVLFWHRRDLRLADNLGIQAAVEISPA-VTGVYVLDPALIHPPQALPPMAPARLWFL 60 Query: 62 YASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDK 121 SL+++Q+ G + D ++ L + + +NR E RD+ Sbjct: 61 LESLIELQQRWRAAGSRLLILE----GDPVQMLPPLAERLSAEAVVWNRDVEPYSRERDR 116 Query: 122 LLEKRLQHRVICKSFD-DSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVP 180 + KRLQ D D +L+ P + A Y+VY PF + + ++ P Sbjct: 117 QVAKRLQADGRQVVVDWDQLLIAPELLKTGAGDPYRVYGPFLRNWRGKVQAQQPTTIEAP 176 Query: 181 A--IRLTGPVTPSNIPRF---FDYPFQAID--PMFPIGEQNALHILRKFCKEKVYYYVEQ 233 + + L + P P D+ FQ + P P GE AL L F + Y Sbjct: 177 SGLVDLDSSLVPEGDPLAALRHDHGFQGTEICPCRP-GESAALEQLTCFADGALSAYEPD 235 Query: 234 RDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFS-WLNELIWREFYR 292 R+ P + GTS LS LS+G LSPRQ W ++ + A + W EL WREFY+ Sbjct: 236 RNFPNVVGTSYLSAALSVGTLSPRQAWCAAQQGRDHARSDEQRTAIAVWEQELGWREFYQ 295 Query: 293 HLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNR 352 + +P + G P+ + W + +W+ G TG PIIDAAMRQLN GWMHNR Sbjct: 296 QALFHFPELADG-PYREQWRRFPWENNEAWFSSWRDGMTGMPIIDAAMRQLNESGWMHNR 354 Query: 353 LRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPT 412 RMI ASFLVKDL+ DWR GE FM +DGDLA+NNGGWQW+AS+G D P RIFNP Sbjct: 355 CRMIVASFLVKDLICDWRWGERAFMELEVDGDLAANNGGWQWSASSGMDPKP-LRIFNPA 413 Query: 413 IQGKRFDPQGTFIRHWLPELNNVPTQ-YIHAPHSWLDKNDLSLNYPLPIVDHK 464 Q +FD G +IR WLPEL +V T+ + L++ YP P+++HK Sbjct: 414 TQATKFDADGDYIRRWLPELRHVNTKDLLTGEIGGLERR----GYPEPLINHK 462 >gi|256425909|ref|YP_003126562.1| deoxyribodipyrimidine photo-lyase [Chitinophaga pinensis DSM 2588] gi|256040817|gb|ACU64361.1| Deoxyribodipyrimidine photo-lyase [Chitinophaga pinensis DSM 2588] Length = 434 Score = 249 bits (636), Expect = 7e-64, Method: Compositional matrix adjust. Identities = 167/473 (35%), Positives = 234/473 (49%), Gaps = 48/473 (10%) Query: 8 SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQ-HGISARQSHFIYASLL 66 +V+L WLR DLR+ D+ ALY A + + V+ VF+ R+ FI+ L Sbjct: 4 TVNLCWLRRDLRLLDHAALYHALKSGNP-VVPVFVFDTNILNDLDDKHDRRVTFIHDILE 62 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 +Q+ LS+ G + + + Y + V ++F N YE V+RD + K Sbjct: 63 DLQEKLSKLGSTLDVF----YGTPQQAFEHYTREYDVQEVFTNIDYEPYAVKRDSDIAKI 118 Query: 127 LQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPA-IRL 184 L+ + I + D V+ +L Q Y V+TP+ K L L+ PV R Sbjct: 119 LKAKNIHFHLYKDHVIFDHSEVLKDNGQPYTVFTPYSKKWKSLLTDFYLKPYPVEKYFRN 178 Query: 185 TGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244 IP FQA FP +++ K Y + RDIP I+GTS Sbjct: 179 FYKQKAKKIPSLRALGFQAGFRGFP-----PVNVKDNILKN----YDKTRDIPGIEGTSH 229 Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304 L +L G +S R DL + + ++L ELIWR+F++ ++ +P V Sbjct: 230 LGVHLRFGTISIR-----------DLAERANTLNETFLGELIWRDFFQMILWHFPHVVT- 277 Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364 + F + I+W + Q W G TG+PI+DA MR+LNT G+MHNR+RMITASFL K Sbjct: 278 QSFRREYDNIQWRNNEKEFQRWCDGETGYPIVDAGMRELNTTGFMHNRVRMITASFLTKH 337 Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424 LL+DWR GE YF +LLD DLA+NNG WQWAA G D+ PYFR+FNPT+Q +RFDP + Sbjct: 338 LLIDWRWGEAYFAKKLLDYDLAANNGNWQWAAGCGCDAAPYFRVFNPTLQTQRFDPDFEY 397 Query: 425 IRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477 IR W+PE L Y P+V H++A L Y AA Sbjct: 398 IRKWVPEFE-------------------ELTYVKPMVVHEQARKRVLEVYKAA 431 >gi|294085609|ref|YP_003552369.1| deoxyribodipyrimidine photo-lyase [Candidatus Puniceispirillum marinum IMCC1322] gi|292665184|gb|ADE40285.1| Deoxyribodipyrimidine photo-lyase [Candidatus Puniceispirillum marinum IMCC1322] Length = 477 Score = 249 bits (636), Expect = 7e-64, Method: Compositional matrix adjust. Identities = 164/487 (33%), Positives = 249/487 (51%), Gaps = 24/487 (4%) Query: 6 AMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASL 65 A S+ + W R DLR+ DN +L AA D V+ +FI + H A +++ +L Sbjct: 2 ASSIIIHWFRQDLRLADNPSLVAAAQAGD--VLPLFILDDDNAGDHKTGAAGRSWLHHAL 59 Query: 66 LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125 + SL K C D ++ + + + +F+NR YE + RDK+L+ Sbjct: 60 NALNMSLDGK-------LCVMRGDPVDIIPKLVAKVGASGVFWNRCYEPWRIARDKMLKT 112 Query: 126 RLQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL 184 L + I +SF+ S+L P ++L Y+V+TPF + N L A++L Sbjct: 113 NLTNNNIQVESFNGSLLWEPWTVLKGDGTPYRVFTPFYRRGCLNAAPPRLPLARPDAMQL 172 Query: 185 TG-PVTPSNIPRFF---DYPFQA-IDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAI 239 P + +I D+ + A + + IGE A+ L F + + Y + R+ PA Sbjct: 173 VADPESSMSIDALNLLPDHDWGAKMASHWQIGEAAAMTRLHDFVEGGLNGYKDGRNFPAR 232 Query: 240 QGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYP 299 TS+LS +L G +SP W E+ F L+EL WREF L+ +P Sbjct: 233 PHTSRLSAHLHWGEISPNMAWYAAIEKRDQAGFDNDIDVF--LSELGWREFSHSLLYHFP 290 Query: 300 SVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITAS 359 + + P + W D + L+AW+QG TG+PIIDA MR+L G+MHNR+RMI S Sbjct: 291 HLPR-QNLQPKFDSFPWQSDDNALRAWQQGKTGYPIIDAGMRELWETGYMHNRVRMIVGS 349 Query: 360 FLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFD 419 FLVK+LL+ W GE +F L+D DLA+N+ GWQW A G D+ PYFR+FNP QG +FD Sbjct: 350 FLVKNLLLHWHHGEAWFWDCLVDADLANNSAGWQWIAGCGADAAPYFRVFNPITQGTKFD 409 Query: 420 PQGTFIRHWLPELNNVPTQYI----HAPHSWLDKNDLSL--NYPLPIVDHKKACHHTLNQ 473 G++ R ++PEL +P +Y+ AP L ++L +YP PIVD K++ L Sbjct: 410 ADGSYTRRFVPELATLPNKYLFSPWEAPALELQAAGITLGKDYPNPIVDVKRSREAALAA 469 Query: 474 YYAAKKQ 480 + + + Sbjct: 470 FATTRVE 476 >gi|251772673|gb|EES53237.1| Deoxyribodipyrimidine photo-lyase [Leptospirillum ferrodiazotrophum] Length = 468 Score = 249 bits (635), Expect = 9e-64, Method: Compositional matrix adjust. Identities = 164/493 (33%), Positives = 242/493 (49%), Gaps = 65/493 (13%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATP----------EQWRQHGISARQSHF 60 +VW R++LR++DN+ L A + V+ V++ P ++WR+ Sbjct: 4 IVWFRHNLRLSDNRPLSLAA--KEGAVLPVYVHDPTLSLFPDRVRQRWRKR--------- 52 Query: 61 IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120 SL ++ +SL + G S S E L + R +++ R D Sbjct: 53 ---SLWELDRSLRKLGNRLHVFSGS----SCEILLKVATRVRAERVYAFRGL----TGED 101 Query: 121 KLLEKRLQHRVI-------CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQAD 173 + LE+RL++ + FD L PP +K++TP+ + Q+ + Sbjct: 102 RALEERLENELRKAGVSLHLTGFD--TLYPPDLAAEGRSSPWKIFTPYHRFCRQSFLPE- 158 Query: 174 LRSLPVPAIRLTGPVTPS------NIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKV 227 LP P+ + P S F +P GE A+H LR+F + + Sbjct: 159 -HPLPAPSRVDSLPSLASLGGEEEVGGAGEVVSFVGFEP----GEAGAMHCLREFLENSL 213 Query: 228 YYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIW 287 Y +RD PA +GTS+LSP+L+ G +S R+ RL+E P +L EL W Sbjct: 214 AGYASRRDYPAEEGTSRLSPHLASGEISVREIVQRLQESDA-----PGKDREKFLEELGW 268 Query: 288 REFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAM-RQLNTI 346 REF HL+ F+P + + W +EW D AWK+G TGFP++DA M R+L Sbjct: 269 REFSAHLLFFHPEMLVDPLKKEWA-TMEWTSDEAGFLAWKEGRTGFPLVDAGMMRELAET 327 Query: 347 GWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYF 406 GWMHNR+RM+ ASFLVK+L V W+ G +F +LLD D A+N WQW A G D+ PYF Sbjct: 328 GWMHNRVRMVAASFLVKNLGVSWQSGSRWFAERLLDYDPANNAASWQWVAGCGIDAAPYF 387 Query: 407 RIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND-----LSLNYPLPIV 461 RIFNP +QG+R+DP G ++R +LPEL+ +P + IH P D S YP PIV Sbjct: 388 RIFNPVLQGQRYDPHGKYVRRFLPELSALPDEKIHLPRKQSSSADWERPASSQGYPEPIV 447 Query: 462 DHKKACHHTLNQY 474 D ++ L +Y Sbjct: 448 DLSESREAALRRY 460 >gi|296448539|ref|ZP_06890415.1| Deoxyribodipyrimidine photo-lyase [Methylosinus trichosporium OB3b] gi|296253957|gb|EFH01108.1| Deoxyribodipyrimidine photo-lyase [Methylosinus trichosporium OB3b] Length = 477 Score = 249 bits (635), Expect = 9e-64, Method: Compositional matrix adjust. Identities = 174/468 (37%), Positives = 246/468 (52%), Gaps = 35/468 (7%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 ++W R DLR+TDN AL AA A ++A+FI + G +AR +++ SL+ + Sbjct: 6 ILWFRRDLRLTDNLALAAAATTG-APLVALFILDEDDDPPLGGAARW--WLHHSLVSLTH 62 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130 L ++G+ + S L + +F++R YE +RRD +E L+ Sbjct: 63 DLRERGLSLTLRRGP----SAASLTRLVPETGARAVFWSRVYEPAALRRDGEIETMLRAS 118 Query: 131 -VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPA-IRLTGPV 188 V +SF ++L PG I + + ++V+ PF +A Q +V P PA RL Sbjct: 119 GVEAQSFSGALLFEPGEIRSAQGRAFRVFAPFWRA-AQAIVAP---GAPKPAPTRLRAAP 174 Query: 189 TPSN--------IPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ 240 P + PR D+ D P GE A L F ++ V Y RD PA Sbjct: 175 APRSERLEDWGLTPREPDWAGGLRDAWRP-GESGARARLDAFVEDGVRDYAAARDFPAKD 233 Query: 241 GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPS 300 S+LSP+L G + PRQ W + E D P++ ++L EL WREF H++ +PS Sbjct: 234 NVSRLSPHLHWGEIGPRQVWRAI--EGAD---APRADIAAFLRELGWREFCHHILLDHPS 288 Query: 301 VCMGKPFIPWTEKIEWNKD-SHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITAS 359 + P P + W +D L +AW +G TG+P +DA MRQL GWMHNRLRMI AS Sbjct: 289 LPEA-PLDPDFARFPWAQDDGTLFRAWARGATGYPFVDAGMRQLWLTGWMHNRLRMIVAS 347 Query: 360 FLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFD 419 FLVK LL+DWR GE +F L+D DL+SN WQWAA G D+ PYFRIFNP +QG+++D Sbjct: 348 FLVKHLLLDWREGERWFFDTLVDADLSSNAFNWQWAAGCGADAAPYFRIFNPVLQGEKYD 407 Query: 420 PQGTFIRHWLPELNNVPTQYIH----APHSWLDKNDLSLN--YPLPIV 461 G F+R ++PEL + YIH AP L + + L YPL I+ Sbjct: 408 ADGAFVRRFVPELARLDAHYIHRPWTAPEQKLREAGVRLGETYPLAII 455 >gi|6118527|gb|AAF04135.1|AF191033_3 DNA photolyase [Mycobacterium smegmatis] Length = 431 Score = 249 bits (635), Expect = 9e-64, Method: Compositional matrix adjust. Identities = 162/469 (34%), Positives = 228/469 (48%), Gaps = 50/469 (10%) Query: 12 VWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQKS 71 +WLR DLR+ D AL AA D+ V+ F+ P R G R+ F++ SL ++ Sbjct: 1 MWLRRDLRLGDLPALQAARGTDDSSVLLCFVVDPRLARSSG--ERRLAFLFDSLRELDDK 58 Query: 72 LSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHRV 131 L + +V + +D+ + + R RRD+ + + L V Sbjct: 59 LDGRLLVVRGRPDEEIPRLARAVDAEAVHISADFTPFGR-------RRDEAVAEALGE-V 110 Query: 132 ICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPS 191 ++ L+ PG I + YKV+TPF + + + S VP+ + P + Sbjct: 111 PLEATGSPYLVSPGRITKDDGEPYKVFTPFFRRWRDHGWRRPAES-SVPSSAVVDPADIA 169 Query: 192 NIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSI 251 N R P + FP GE A +F + Y E RD PA TS++S YL Sbjct: 170 NSGRIA-VPTAPVKLSFPAGEDAARQRWAEFVDADLADYDEIRDDPAADATSRMSAYLKY 228 Query: 252 GVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWT 311 G + PR VDL GA ++L EL +R+FY ++ +P W Sbjct: 229 GNIHPRTL-------AVDL--GKGKGAQAYLRELAFRDFYADVLWHWPHSLWHN----WN 275 Query: 312 EK---IEWNKDS---HLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365 + IE + D + WK G TGFP++DA MRQLN GWMHNR+RMITASFLVKDL Sbjct: 276 RRFDAIELDTDDAAYERFEVWKAGRTGFPLVDAGMRQLNETGWMHNRVRMITASFLVKDL 335 Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425 + W G EYF+ QL+DGD+ASNN GWQWAA TG D+ PYFR+FNP Q K+FDP+G ++ Sbjct: 336 HLPWWWGAEYFLEQLVDGDMASNNHGWQWAAGTGTDAAPYFRVFNPQTQAKKFDPKGEYV 395 Query: 426 RHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQY 474 R W+ ++ + +YP PIVDH L +Y Sbjct: 396 RRWVGDVE-------------------ADDYPGPIVDHSAERAEALRRY 425 >gi|196231423|ref|ZP_03130282.1| Deoxyribodipyrimidine photo-lyase [Chthoniobacter flavus Ellin428] gi|196224759|gb|EDY19270.1| Deoxyribodipyrimidine photo-lyase [Chthoniobacter flavus Ellin428] Length = 468 Score = 249 bits (635), Expect = 1e-63, Method: Compositional matrix adjust. Identities = 164/473 (34%), Positives = 238/473 (50%), Gaps = 29/473 (6%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 MS + W R DLRITDN AL AA D +V+ V+I + + A + F+ L Sbjct: 1 MSTAIHWFRRDLRITDNTALAAAAAAHD-QVVPVYIVSEWKAEHRWCGAPRQAFLCGCLD 59 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYE-INEVRRDKLLEK 125 + ++L KG Q D++ L Q +++NR + ++L + Sbjct: 60 SLARNLEAKGGRLIIRQGRA--DAV--LKKLVQQTEAEAIYFNRDPDPFGRAMEERLTKI 115 Query: 126 RLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185 + + D L +L +KV+TP+ KA ++ P P ++ Sbjct: 116 ARDLGIRLHPYKDIALHERNEVLTGGGSPFKVFTPYAKAWLK-------LDKPEPTRAIS 168 Query: 186 GPVTPSNI-----PRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ 240 TP +I P + + GE A L F +++Y +RD+PA + Sbjct: 169 KLSTPPHIASDPLPTLHTWKLVGEAAILEPGEAAARKRLGCFLDGPIFHYQTRRDLPAEE 228 Query: 241 GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPS 300 GTS+LS L G LS R+ + + + ++NELIWREFY ++ +P Sbjct: 229 GTSRLSQDLRHGTLSIREVYAKCARAAEKAPAAHQRNIGIFINELIWREFYLQVLWHWPQ 288 Query: 301 VCMGKPFIPWTEKIEW-------NKDS-HLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNR 352 V + F +++W KD Q W +G TGFPI+DA MRQL G+MHNR Sbjct: 289 V-LDHEFQEDCRRLKWRDYWRPEKKDGGQDYQRWCRGETGFPIVDAGMRQLAATGFMHNR 347 Query: 353 LRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPT 412 +RMI A FL KDL V W GE +FM L+DG++ASNNGGWQW+ASTG D+ PYFRI NP Sbjct: 348 VRMIVAMFLTKDLHVWWMHGESWFMRHLVDGEIASNNGGWQWSASTGTDAAPYFRIQNPW 407 Query: 413 IQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKK 465 Q KRFDP+G +I+ W+PEL +VP + AP + L+ +YPLP+VDH + Sbjct: 408 SQSKRFDPEGAYIKRWVPELRDVPAGQLCAPPK--EGEALARDYPLPMVDHAR 458 >gi|254374529|ref|ZP_04990010.1| deoxyribodipyrimidine photolyase [Francisella novicida GA99-3548] gi|151572248|gb|EDN37902.1| deoxyribodipyrimidine photolyase [Francisella novicida GA99-3548] gi|332678425|gb|AEE87554.1| Deoxyribodipyrimidine photolyase [Francisella cf. novicida Fx1] Length = 464 Score = 248 bits (634), Expect = 1e-63, Method: Compositional matrix adjust. Identities = 164/490 (33%), Positives = 254/490 (51%), Gaps = 56/490 (11%) Query: 4 TTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYA 63 + +++H W R DLR+ DN ALY A + I +FI Q I + +++ Sbjct: 2 SKKIAIH--WFRQDLRLADNPALYQASQADE--TITIFILDKNQ----DIGSASKLWLHH 53 Query: 64 SLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLL 123 SL + SL K + + +E + + +T ++NR Y+ + RD + Sbjct: 54 SLNSLNSSLDNKLNFYS-------GNPLEIIKKIIKENNITDFYWNRCYDKYSIDRDTQI 106 Query: 124 EKRLQ-HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQ------NLVQAD--- 173 ++ LQ H++ SF+ S+L+ P YKVYTPF K LI+ N+ + + Sbjct: 107 KQFLQQHKINVNSFNGSLLIEPWQCKKDDGTHYKVYTPFYKELIKIRKYRSNIAKPNFSY 166 Query: 174 LRSLP----VPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYY 229 LR L + +++L P + +Q I + IGE + IL +F KV Sbjct: 167 LRKLNNSENLDSLKLLQP----------KHSWQNIIKQWQIGESASHQILEEFLDNKVKE 216 Query: 230 YVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWRE 289 Y RD + TS+LSPYL G +SP Q +N ++ +D + + ++ EL+WR+ Sbjct: 217 YKTARDFMSTDSTSKLSPYLHFGEISPNQIFNAVQS--LDYI---GNNEEHFIKELVWRD 271 Query: 290 FYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWM 349 F + + +YP + K + +W+ D LL+ W++G TG PI+DA MR+L G+M Sbjct: 272 FSYYQIYYYPEL-HNKNINQKFDSFKWDNDPTLLKKWQKGQTGIPIVDAGMRELWQTGYM 330 Query: 350 HNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIF 409 HNR+RMI ASFL+K+ L+ W+ GE++F L D D ASNN WQW A G D+ PYFRIF Sbjct: 331 HNRVRMIVASFLIKNCLIHWKYGEKWFFDTLFDADFASNNANWQWVAGCGLDAAPYFRIF 390 Query: 410 NPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSW------LDKNDLSL--NYPLPIV 461 NP +Q ++F+ +IR ++PEL +P + I P W L + ++L NYP PIV Sbjct: 391 NPVLQAEKFEAY-EYIRKYVPELKLLPNKLIAKP--WEASELVLKEAGITLGQNYPKPIV 447 Query: 462 DHKKACHHTL 471 D KK+ L Sbjct: 448 DLKKSRDRAL 457 >gi|118497711|ref|YP_898761.1| deoxyribodipyrimidine photolyase [Francisella tularensis subsp. novicida U112] gi|194323683|ref|ZP_03057459.1| deoxyribodipyrimidine photolyase family protein [Francisella tularensis subsp. novicida FTE] gi|208779776|ref|ZP_03247120.1| deoxyribodipyrimidine photolyase family protein [Francisella novicida FTG] gi|118423617|gb|ABK90007.1| deoxyribodipyrimidine photolyase [Francisella novicida U112] gi|194322047|gb|EDX19529.1| deoxyribodipyrimidine photolyase family protein [Francisella tularensis subsp. novicida FTE] gi|208744231|gb|EDZ90531.1| deoxyribodipyrimidine photolyase family protein [Francisella novicida FTG] Length = 464 Score = 248 bits (634), Expect = 1e-63, Method: Compositional matrix adjust. Identities = 164/490 (33%), Positives = 254/490 (51%), Gaps = 56/490 (11%) Query: 4 TTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYA 63 + +++H W R DLR+ DN ALY A + I +FI Q I + +++ Sbjct: 2 SKKIAIH--WFRQDLRLADNPALYQASQADE--TITIFILDKNQ----DIGSASKLWLHH 53 Query: 64 SLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLL 123 SL + SL K + + +E + + +T ++NR Y+ + RD + Sbjct: 54 SLNSLNSSLDNKLNFYS-------GNPLEIIKKIIKENNITDFYWNRCYDKYSIDRDTQI 106 Query: 124 EKRLQ-HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQ------NLVQAD--- 173 ++ LQ H++ SF+ S+L+ P YKVYTPF K LI+ N+ + + Sbjct: 107 KQFLQQHKINVNSFNGSLLIEPWQCKKDDGTHYKVYTPFYKELIKIRKYRSNIAKPNFSY 166 Query: 174 LRSLP----VPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYY 229 LR L + +++L P + +Q I + IGE + IL +F KV Sbjct: 167 LRKLNNSENLDSLKLLEP----------KHSWQNIIKQWQIGESASHQILEEFLNNKVKE 216 Query: 230 YVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWRE 289 Y RD + TS+LSPYL G +SP Q +N ++ +D + + ++ EL+WR+ Sbjct: 217 YKTARDFMSTDSTSKLSPYLHFGEISPSQIFNAVQS--LDYI---GNNEEHFIKELVWRD 271 Query: 290 FYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWM 349 F + + +YP + K + +W+ D LL+ W++G TG PI+DA MR+L G+M Sbjct: 272 FSYYQIYYYPEL-HNKNINQKFDSFKWDNDPTLLKKWQKGQTGIPIVDAGMRELWQTGYM 330 Query: 350 HNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIF 409 HNR+RMI ASFL+K+ L+ W+ GE++F L D D ASNN WQW A G D+ PYFRIF Sbjct: 331 HNRVRMIVASFLIKNCLIHWKYGEKWFFDTLFDADFASNNANWQWVAGCGLDAAPYFRIF 390 Query: 410 NPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSW------LDKNDLSL--NYPLPIV 461 NP +Q ++F+ +IR ++PEL +P + I P W L + ++L NYP PIV Sbjct: 391 NPVLQAEKFEAY-EYIRKYVPELKLLPNKLIAKP--WEASELVLQEAGITLGQNYPKPIV 447 Query: 462 DHKKACHHTL 471 D KK+ L Sbjct: 448 DLKKSRDRAL 457 >gi|91774219|ref|YP_566911.1| deoxyribodipyrimidine photo-lyase type I [Methanococcoides burtonii DSM 6242] gi|91713234|gb|ABE53161.1| Deoxyribodipyrimidine photolyase [Methanococcoides burtonii DSM 6242] Length = 467 Score = 248 bits (633), Expect = 1e-63, Method: Compositional matrix adjust. Identities = 168/495 (33%), Positives = 242/495 (48%), Gaps = 52/495 (10%) Query: 4 TTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHG--ISARQSHFI 61 T+ ++ L R D+R+ DN AL AA SD VI FI P G ++ F+ Sbjct: 2 TSRLNRSLFVFRRDMRVDDNSALLAALDMSDV-VIPCFILDPRLCDPKGKAFNSNALQFL 60 Query: 62 YASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDK 121 SL ++ L + + + + S + + + + +F N Y ++RD Sbjct: 61 LESLYDLKGQLEK--VNGRLYLFSGLPEGV--IGQLLENLEIDAVFVNHDYTPFSIKRD- 115 Query: 122 LLEKRLQHRVICKS-------FDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADL 174 +Q IC F D +L PGSI YKV+T F + +A Sbjct: 116 -----MQIASICTDKGVDMLQFHDCLLHEPGSIRTKKGTPYKVFTQFFR-------EASK 163 Query: 175 RSLPVPAIRLTGP-------VTPSNIPRFFDYPFQAIDPMFPI--GEQNALHILRKFCKE 225 R + VP++ G V + F + + G N L +L+ Sbjct: 164 RDVAVPSMFSGGSFFTGDCGVDEVDEGSFLKRSLPERNEQIFVHGGRANGLSVLQSL--S 221 Query: 226 KVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNEL 285 + Y +RD+P+++GT+ LS + +G +S R EF +I + +NEL Sbjct: 222 QFVNYDTERDLPSVKGTTGLSAHNKLGTISIR--------EFYYSVIDELGRGHTLINEL 273 Query: 286 IWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNT 345 WR+F+ + +P V F + + W+ D AW G TGFPI+DA MR+LNT Sbjct: 274 YWRDFFTQISFEFPDV-FKHAFKKKFDHLSWDNDRIFFDAWCLGKTGFPIVDAGMRELNT 332 Query: 346 IGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPY 405 G+MHNR+RMI ASFLVKDL +DW+ GE YF S+L+D D NNG WQWAASTG DS PY Sbjct: 333 TGYMHNRVRMIVASFLVKDLHIDWKRGERYFASKLVDYDPCVNNGNWQWAASTGADSQPY 392 Query: 406 FRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSL-NYPLPIVDHK 464 FRIFNP +Q K+FD +I+ W+PEL ++ Q IH L+K D+ + YP PIVDH Sbjct: 393 FRIFNPWLQQKKFDKDCKYIKKWIPELEDIEPQRIHK----LEKGDMDIPGYPAPIVDHS 448 Query: 465 KACHHTLNQYYAAKK 479 K L + AA + Sbjct: 449 KEREVALFMFKAASQ 463 >gi|260753965|ref|YP_003226858.1| deoxyribodipyrimidine photo-lyase [Zymomonas mobilis subsp. mobilis NCIMB 11163] gi|258553328|gb|ACV76274.1| Deoxyribodipyrimidine photo-lyase [Zymomonas mobilis subsp. mobilis NCIMB 11163] Length = 469 Score = 248 bits (633), Expect = 1e-63, Method: Compositional matrix adjust. Identities = 164/485 (33%), Positives = 253/485 (52%), Gaps = 50/485 (10%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSH----FIYASLL 66 L+W R+D R+ DN A+ AA + + VI +I Q A+ + ++ SLL Sbjct: 8 LIWFRHDFRLRDNAAITAAIQSRNP-VICFYI-------QESADAKTENAADWWVAESLL 59 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQ-RVTKLFYNRQYEINEVRRDKLLEK 125 + + L +KG Q F+ E + +QQ KLF+NR+Y+ D++L+K Sbjct: 60 ALNRQLKEKG-----GQLHLFEGDAEKIIPEIVQQSHACKLFWNRRYDFKGKETDQILKK 114 Query: 126 RLQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNL-VQADLRSLPVPAIR 183 ++ + +SF +++L P ++ N Q +++++ + +A+ +++ +QA LP P Sbjct: 115 SIRAMGLEVQSFPNNLLNEPWTVKNDKGQPFRIFSAYWRAVQRHMNIQA---VLPCPENW 171 Query: 184 LTGPVTPSNIPRFFDYPFQAI------DPMFPI--------GEQNALHILRKFCKEKVYY 229 + + I Y AI D + I GE A L+ F + + + Sbjct: 172 V---FSTREIRHCLGYKDIAILAKETQDSSWKIKLKQSHRFGENEAHERLKSFIENDLAH 228 Query: 230 YVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWRE 289 Y ++RD PA GTS LS +L G +S +Q W+ + + G +L EL WRE Sbjct: 229 YAKERDFPAKDGTSLLSAFLRSGQISSKQIWHEVTKN------GSGEGTSKFLAELGWRE 282 Query: 290 FYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWM 349 F ++ +P + + P +K+ W K S LQ WK+G TG+P IDA MR L G+M Sbjct: 283 FAWSVLWEHPDLNQ-RNLRPEFDKMPWEKASDNLQRWKEGQTGYPFIDAGMRALWQTGFM 341 Query: 350 HNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIF 409 NRLRM+TASFLVK LL+DWR GE++F L+D D A N WQW A +G +S PYFRI Sbjct: 342 PNRLRMVTASFLVKHLLIDWREGEKWFAQTLVDYDPACNATNWQWVAGSGIESAPYFRIM 401 Query: 410 NPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHH 469 NP +Q ++FDP G +IR W+ EL +V T +IH P + NYPLPI+ H++ Sbjct: 402 NPILQSQKFDPDGQYIREWVKELADVSTAFIHTP---WKADKQPANYPLPIIAHEEGRDR 458 Query: 470 TLNQY 474 L + Sbjct: 459 ALRAW 463 >gi|284034972|ref|YP_003384902.1| deoxyribodipyrimidine photo-lyase [Spirosoma linguale DSM 74] gi|283814265|gb|ADB36103.1| Deoxyribodipyrimidine photo-lyase [Spirosoma linguale DSM 74] Length = 438 Score = 248 bits (633), Expect = 2e-63, Method: Compositional matrix adjust. Identities = 167/478 (34%), Positives = 233/478 (48%), Gaps = 58/478 (12%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISA------RQSHFIY 62 + LVWLR DLR+ DN ALY A S VI VFI + + + A R+ F+ Sbjct: 5 LSLVWLRRDLRLHDNAALYYAL-KSGRPVIPVFI-----FDRVILDALDDRLDRRVEFLV 58 Query: 63 ASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKL 122 + ++ L++ G D E +++Y + +F N YE RDK Sbjct: 59 QEVNRLHDELAKLGSTIIVRYGKPVDVWKELIETYT----IGDVFTNHDYEGYAKERDKA 114 Query: 123 LEKRLQHRVIC-KSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPA 181 + + L R I + D + +L+ Y V+TP+ + L L+S P Sbjct: 115 IGELLAERGIGFHTSKDQAIFERDEVLSGKKTPYTVFTPYSRKWKDTLTDFYLKSYPTEN 174 Query: 182 IRL-TGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAI- 239 P D FQ + FP E + +L Y E RD PA+ Sbjct: 175 YSSHYWQTKPEPAITLADMGFQPVGEPFP-AETVSDKLLDT--------YNETRDFPALP 225 Query: 240 QGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYP 299 TSQLS +L G +S R+ + K + ++LNEL WR+FY ++ +P Sbjct: 226 HSTSQLSIHLRFGTISIRELARQAK----------AADDQTFLNELCWRDFYFQVLDHFP 275 Query: 300 SVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITAS 359 V F ++IEW + W +G TG+PI+DA MRQLNTIGWMHNR+RMITAS Sbjct: 276 HVEQ-YSFRREYDQIEWRNNEDEFDKWCRGETGYPIVDAGMRQLNTIGWMHNRVRMITAS 334 Query: 360 FLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFD 419 FL K LL+DWR GE YF +L D DL++NNGGWQWAA +G D+ PYFR+FNPT Q +RFD Sbjct: 335 FLCKHLLIDWRWGEAYFGKKLRDYDLSANNGGWQWAAGSGTDAAPYFRVFNPTAQAQRFD 394 Query: 420 PQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477 P+ +IR W+PE++ +YP P+VDH A ++ Y A Sbjct: 395 PKSVYIRQWVPEVDKP-------------------SYPKPMVDHAMARQRAIDTYRKA 433 >gi|255531982|ref|YP_003092354.1| Deoxyribodipyrimidine photo-lyase [Pedobacter heparinus DSM 2366] gi|255344966|gb|ACU04292.1| Deoxyribodipyrimidine photo-lyase [Pedobacter heparinus DSM 2366] Length = 434 Score = 248 bits (633), Expect = 2e-63, Method: Compositional matrix adjust. Identities = 163/478 (34%), Positives = 237/478 (49%), Gaps = 54/478 (11%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISA-RQSHFIYASLLQ 67 V + W R DLR+ DN LY A +S V+ +FI + G R+ +I +LL+ Sbjct: 5 VSIFWFRRDLRLEDNVGLYHAL-SSGFPVLPIFIFDENILGKLGDKKDRRVDYIDQALLK 63 Query: 68 VQKSLS-QKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD-KLLEK 125 + L K + +H + IE + Q V +F NR YE ++RD ++ E Sbjct: 64 INTQLKLSKTRLNTFH-----GNPIEIFNMLSEQYAVQAVFCNRDYEPLTIQRDVEIYEF 118 Query: 126 RLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185 ++++ K+F D V+ +L + Y VYTP+ K + L + RS Sbjct: 119 FKRNQIPFKAFKDQVIFDKSDVLKNDGTPYTVYTPYSKKWKELLKEEHYRSYH------- 171 Query: 186 GPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILR--KFCKEKVYYYVEQRDIPAIQGTS 243 + FF F I + IG + K + Y + RD PA+Q T+ Sbjct: 172 -----PDYNNFFRQEFTGIHSLNDIGFEKTDIAFETPKLTTTIIDEYDKYRDYPAMQRTT 226 Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCM 303 QL L G +S R+C V +K +WLNELIWREF+ ++ +P V + Sbjct: 227 QLGIALRFGTISIRKC--------VAFGLKHNQ---TWLNELIWREFFMQILYHFPKV-V 274 Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363 + F + I+W + H W +G TG+PI+DA MRQLN G+MHNR+RMI ASFL K Sbjct: 275 DQSFKSKYDNIKWRNNEHEFDRWCEGKTGYPIVDAGMRQLNQTGFMHNRVRMIAASFLCK 334 Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423 LL+DWR GE YF +L D DL++NNG WQWA+ +G DS PYFR+FNPT+Q ++FD Sbjct: 335 HLLIDWRWGEAYFAQKLNDYDLSANNGNWQWASGSGCDSAPYFRVFNPTLQTEKFDKNFA 394 Query: 424 FIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481 +++ W+PE + NYP PIV+H A L Y A K++ Sbjct: 395 YLKKWIPEFE-------------------TENYPEPIVEHSFARERALKTYGNAIKEN 433 >gi|292490401|ref|YP_003525840.1| deoxyribodipyrimidine photo-lyase [Nitrosococcus halophilus Nc4] gi|291578996|gb|ADE13453.1| Deoxyribodipyrimidine photo-lyase [Nitrosococcus halophilus Nc4] Length = 477 Score = 248 bits (633), Expect = 2e-63, Method: Compositional matrix adjust. Identities = 162/457 (35%), Positives = 238/457 (52%), Gaps = 39/457 (8%) Query: 6 AMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQ---WRQHGISARQSHFIY 62 A LVW R DLR+ DN AL AAC +VI V+I PE+ W S H Sbjct: 2 AQPTALVWFRRDLRLGDNPALAAAC-ALGGQVIPVYIDAPEEEGAWPPGAASRWWQHHSL 60 Query: 63 ASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKL 122 A+L K + + IV Q S + L + T +F+NR+YE ++RD+ Sbjct: 61 AALDSGLKKRNSRLIVRQ-------GPSHKALGQLAEETSATHIFWNRRYEPAVIKRDQA 113 Query: 123 LEKRLQHR-VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQN------------- 168 ++++L+ + KS + +L P I + Y+++TPF K ++ Sbjct: 114 IKQQLRAAGLTVKSTNALLLFEPWEIAKNDGMPYRIFTPFWKTCLEKGIGRSPFPPPQHL 173 Query: 169 -LVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKV 227 V L+S P+ + L P P + Q + GE A F +E + Sbjct: 174 PPVNRQLQSEPLSTLGLL-PKIPWD---------QEFYTHWTPGEAGAWRQWECFLEEAL 223 Query: 228 YYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIW 287 Y ++RD P + GTS+LSP+L G +SPRQ +++ + +D + +G ++L +L W Sbjct: 224 GKYHQERDRPDLPGTSRLSPHLHFGEISPRQIAFQIQIQ-MDRRAELTAGGQAYLRQLGW 282 Query: 288 REFYRHLMAFYPSVCMGKPFIPWTEKIEWNKD-SHLLQAWKQGYTGFPIIDAAMRQLNTI 346 REF HL+ +P KP W +D L AW+QG TG P++DA MR+L Sbjct: 283 REFAYHLLYHFPETPE-KPLNEGFTHFPWAEDYGEALTAWQQGRTGIPLVDAGMRELWRT 341 Query: 347 GWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYF 406 GWMHNR+RMI AS L K+L + W+ GE +F L+D DLASN GWQW A G D+ PYF Sbjct: 342 GWMHNRVRMIAASLLTKNLRIPWQEGERWFWETLVDADLASNTLGWQWVAGCGADAAPYF 401 Query: 407 RIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAP 443 R+FNP +QGK+FDP+G +++ W+PEL + Q+IH P Sbjct: 402 RVFNPVLQGKKFDPEGKYVQQWIPELRKISKQHIHEP 438 >gi|256372081|ref|YP_003109905.1| Deoxyribodipyrimidine photo-lyase [Acidimicrobium ferrooxidans DSM 10331] gi|256008665|gb|ACU54232.1| Deoxyribodipyrimidine photo-lyase [Acidimicrobium ferrooxidans DSM 10331] Length = 456 Score = 247 bits (631), Expect = 3e-63, Method: Compositional matrix adjust. Identities = 159/486 (32%), Positives = 237/486 (48%), Gaps = 53/486 (10%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 + ++WLR DLR D+ A ++ DA AVF+ P R H R++ ++ +L ++ Sbjct: 1 MRVLWLRGDLRSYDH-AGWSELGIGDA---AVFVLDPGLAR-HASPIRRA-WLAGALGEI 54 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128 + + L + T++ ++ RR + L+ Sbjct: 55 DDWTDHRLSLLHARHGDE-------LAAIFAAWGATEVLTHQGVAPGIRRRIDATRRSLE 107 Query: 129 HRVIC-KSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187 R I + D + + PGS+ ++V+ F + PA+ GP Sbjct: 108 ARGIALRVVDSAYAVAPGSLTRPEGGAWRVFGAFWRQW-------------RPAVHGLGP 154 Query: 188 VTPSNIP------RFFDYPFQAIDPMFPI--GEQNALHILRKFCKEKVYYYVEQRDIPAI 239 + P R F+ P P P+ ++ AL L +F ++ +Y RD PA+ Sbjct: 155 FEATAPPSLAVTERHFE-PADLRPPDQPLLTPQRTALERLERFVDSRLAHYAADRDRPAV 213 Query: 240 QGTSQLSPYLSIGVLSPRQCWNRLKE-EFVDLLIKPKSGAFSWLNELIWREFYRHLMAFY 298 TS+LSP L IG + PR L + + D ++ EL WREFY H + + Sbjct: 214 AATSELSPALHIGAIHPRTILAALGDLDRADRFVR----------ELAWREFYAHALWHH 263 Query: 299 PSVCMGKPFIPWTEKIEWNKDSHL---LQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRM 355 P + + P +I W++ +AW G TGFPI+DA MR+L GW+HNR+RM Sbjct: 264 PDL-VDLELDPTLRQIAWDEGDEADARFRAWCDGRTGFPIVDAGMRELAATGWLHNRVRM 322 Query: 356 ITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQG 415 I AS LVKDL +DWR G +F + L D D+ASN G WQW A TG D+ PYFR+FNPT+QG Sbjct: 323 IVASLLVKDLHLDWRRGAAWFEATLADADIASNRGNWQWVAGTGLDAAPYFRVFNPTLQG 382 Query: 416 KRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYY 475 K+FDP G ++R W+PEL PT IH P W+ + + YPLPIVDH + L +Y Sbjct: 383 KKFDPDGHYVRRWVPELRACPTSLIHEPWRWVGREN--AGYPLPIVDHDRERREALARYD 440 Query: 476 AAKKQS 481 AA+ + Sbjct: 441 AARASA 446 >gi|87300679|ref|ZP_01083521.1| Deoxyribodipyrimidine photolyase [Synechococcus sp. WH 5701] gi|87284550|gb|EAQ76502.1| Deoxyribodipyrimidine photolyase [Synechococcus sp. WH 5701] Length = 499 Score = 247 bits (630), Expect = 3e-63, Method: Compositional matrix adjust. Identities = 181/490 (36%), Positives = 234/490 (47%), Gaps = 57/490 (11%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 L W R DLR+ DN L AA + A V VF+ P +S + F+ SL ++Q Sbjct: 7 LFWHRRDLRLADNLGLAAAARAT-AAVTGVFVFDPALLDAPDLSPARLWFLSESLRELQG 65 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130 + G + D E L + +NR E + RD+ + + L+ Sbjct: 66 RWREAGSRLLLLR----GDPAEVLPQLAQAAGAQVVAWNRDVEPDGRARDRRVAEALRAG 121 Query: 131 VICKSFDD--SVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSL-----PVPAIR 183 CK D +L+PP ++ A Y+VY PF ++ + + QA + P I Sbjct: 122 G-CKLLADWDQLLVPPDALATGAGDPYRVYGPFFRSWRRRIEQAGAEACAPVAAPASLID 180 Query: 184 LTGPVTPSNIPRFFD-----------------YPFQAID--PMFPIGEQNALHILRKFCK 224 L P+ R +D PF D P P GE A L F Sbjct: 181 LDPAALPAERRRLWDQLNWLETVPTPGDGLPGAPFAGADLCPCRP-GEAAAAAQLAAFAD 239 Query: 225 EKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPR---------QCWNRLKEEFVDLLIKPK 275 + Y R++PA GTS LS L G LSPR + R +EE + + Sbjct: 240 GPLLGYEPGRNLPAEPGTSGLSAALRFGTLSPRQAWAAAQQQRPRARSEEELQSITV--- 296 Query: 276 SGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPI 335 W EL WREFY+ + +P + G P+ P W D AW G TG PI Sbjct: 297 -----WEQELAWREFYQQALFHFPELAEG-PYRPQWRHFPWENDEGRFAAWCDGLTGVPI 350 Query: 336 IDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWA 395 +DAAMRQLN GWMHNR RMI ASFLVKDL+VDWR GE FM L+DGDLA+NNGGWQW+ Sbjct: 351 VDAAMRQLNDSGWMHNRCRMIVASFLVKDLIVDWRWGERQFMRLLVDGDLAANNGGWQWS 410 Query: 396 ASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPT-QYIHAPHSWLDKNDLSL 454 AS+G D P RIFNP Q RFDP+ T+IR WLPEL+ V T I + L++ Sbjct: 411 ASSGMDPKP-LRIFNPYTQAARFDPEATYIRRWLPELSRVATADLIRGEIAPLERR---- 465 Query: 455 NYPLPIVDHK 464 YP PIVDHK Sbjct: 466 GYPGPIVDHK 475 >gi|126728554|ref|ZP_01744369.1| Deoxyribodipyrimidine photolyase [Sagittula stellata E-37] gi|126710484|gb|EBA09535.1| Deoxyribodipyrimidine photolyase [Sagittula stellata E-37] Length = 472 Score = 247 bits (630), Expect = 3e-63, Method: Compositional matrix adjust. Identities = 173/485 (35%), Positives = 234/485 (48%), Gaps = 46/485 (9%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFI--------ATPEQWRQHGISARQSHFIY 62 LVW R DLR++D+ AL A S VI VFI T QWR + Sbjct: 8 LVWFRRDLRLSDHAALTEAA--SGGPVIPVFIRDALVDGLGTAPQWR-----------LG 54 Query: 63 ASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKL 122 L ++L KG ++E L + ++++R Y+ + V RD Sbjct: 55 LGLKSFAEALEAKGSRLILRSGP----AVEVLSELVNETGAKAVYWSRAYDPDSVDRDTR 110 Query: 123 LEKRLQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRS---LP 178 +++ L+ I +SF +L P ++ YKVYTPF KA+ V A L S L Sbjct: 111 VKETLKGDGIDAQSFTGHLLFEPWTVETGQGGFYKVYTPFWKAVRGCDVPAALSSPSDLQ 170 Query: 179 VPAIRLTGPVTPS-NIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIP 237 PA G + + + P +GEQ A L F ++KV Y RD Sbjct: 171 APATWPDGETLADWELGKGMRRGADVVRPYVQLGEQAAQTRLGVFMRDKVADYATTRDEV 230 Query: 238 AIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAF 297 + GTS LS LS+G +SP QCW+ D K GA ++L EL+WREF HLM Sbjct: 231 SKDGTSCLSENLSLGEISPAQCWHAGCRAIED----GKPGAETFLKELVWREFAYHLMWH 286 Query: 298 YPSVCMGKPFIPWTEKIEWNKDSHL--LQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRM 355 P + G W + W D L ++AWKQG TG P +DAAMR+L G MHNR RM Sbjct: 287 TPRLLDGNWRQEW-DGFPWKTDERLREVKAWKQGRTGIPFVDAAMRELYVTGRMHNRARM 345 Query: 356 ITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQG 415 I AS+L K L+ W+IG +F L+D D ASN GWQW+A +G D+ PYFR+FNP Q Sbjct: 346 IVASYLTKHLMCHWKIGMAWFEDCLIDWDPASNALGWQWSAGSGPDATPYFRVFNPVTQR 405 Query: 416 KRFDPQGTFIRHWLPELNNVPT----QYIHA-PHSW-LDKNDLSLNYPLPIVDHKKACHH 469 ++FDP ++ W+ E P+ Y A P SW + D YP PIVD K+ Sbjct: 406 EKFDPDCAYVTRWIAEGRKSPSDTALSYFDAIPESWPMAPGDA---YPDPIVDPKEGREA 462 Query: 470 TLNQY 474 L+ Y Sbjct: 463 ALDAY 467 >gi|189202516|ref|XP_001937594.1| deoxyribodipyrimidine photo-lyase [Pyrenophora tritici-repentis Pt-1C-BFP] gi|187984693|gb|EDU50181.1| deoxyribodipyrimidine photo-lyase [Pyrenophora tritici-repentis Pt-1C-BFP] Length = 534 Score = 247 bits (630), Expect = 3e-63, Method: Compositional matrix adjust. Identities = 153/488 (31%), Positives = 243/488 (49%), Gaps = 48/488 (9%) Query: 17 DLRITDNKALYAA---CHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQKSLS 73 DLRI DN AL+ A ++ ++ +++ P HG SA + F+ L +QK L Sbjct: 56 DLRIQDNTALHHASELAQSAKKPLVCIYVDCPADESWHGTSAARVDFMCEGLKIMQKELK 115 Query: 74 QKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHRVIC 133 I + QC + +E + +Q+V+ +F N +YEI+E+RRD L K + ++ Sbjct: 116 DLNIPLVFLQCEDRKKIVETAVEWVKKQQVSHVFGNYEYEIDEMRRDLKLVKTVGDKIQV 175 Query: 134 KSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLP-VPAIRLTGPVTPSN 192 + D ++ PG++L K++TP+ KA + A LRS P + L PS+ Sbjct: 176 SLYHDQTVVEPGTMLTGTGTPMKIFTPYHKAWL-----AKLRSEPELLDNNLPPAANPSS 230 Query: 193 IPR----FFDYPF---------------QAIDPMFPIGEQNALHILRKFCKEKVYYYVEQ 233 + + FD P + I ++P G A + F K+ + +Y Sbjct: 231 MKKDLKDLFDTPAPKPASDKQFASDEEKKRIRKLWPAGHSAASARMDSFLKQ-ISHYAAT 289 Query: 234 RDIPAIQGTSQLSPYLSIGVLSPRQC------WNRLKEEFVDLLIKPKSGAFSWLNELIW 287 R PA TS++S Y S G++S R +NR +F + K +G + W+ E+++ Sbjct: 290 RSNPAANSTSRMSAYFSAGMISMRSTLQKVVDYNRGSTDFTE--AKASTGVYGWVREIVF 347 Query: 288 REFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIG 347 RE YR P M P + ++W D + W +G TG P IDA MRQLN Sbjct: 348 RELYRQTTMTTPHTSMNLPQNLKFDAVQWEDDEEGWEKWYKGQTGEPFIDAGMRQLNAEA 407 Query: 348 WMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFR 407 +MHNRLRM +S+L +LL+D+R GE YF L+D DL++N GW+ P + Sbjct: 408 YMHNRLRMNVSSYLYCNLLLDYRRGERYFAETLIDWDLSNNTQGWE----------PSYT 457 Query: 408 IFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLS-LNYPLPIVDHKKA 466 +FNP Q ++ DP G +IR W+PEL +V + + AP++ L K + L YP P VD K+ Sbjct: 458 VFNPVSQAEKNDPDGEYIRKWVPELKHVKGKAVFAPYARLSKEEFEKLGYPKPHVDWKET 517 Query: 467 CHHTLNQY 474 ++++ Sbjct: 518 KARAIDRF 525 >gi|328544427|ref|YP_004304536.1| Deoxyribodipyrimidine photolyase family [polymorphum gilvum SL003B-26A1] gi|326414169|gb|ADZ71232.1| Deoxyribodipyrimidine photolyase family [Polymorphum gilvum SL003B-26A1] Length = 480 Score = 247 bits (630), Expect = 4e-63, Method: Compositional matrix adjust. Identities = 162/489 (33%), Positives = 233/489 (47%), Gaps = 37/489 (7%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 LVW R DLRI DN AL+ A + V P H + A +++ SL + + Sbjct: 4 LVWFRQDLRIADNPALFEAAARGSVLPVFVLDEGPGD-NTHPLGAASRWWLHHSLEALAR 62 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL-QH 129 L + +V + D + V + +NR YE + VRRD L+ L Sbjct: 63 DLGR--LVLLH------GDPQRLIPELARAAGVGAVHWNRCYEPHAVRRDTALKAALIAA 114 Query: 130 RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189 V +SF+ ++L P + +KV++P+ +A + V L P I Sbjct: 115 GVEVRSFNAALLNEPWELETKTGGPFKVFSPYWRAALARPVATPLPRPPRLEI-----AA 169 Query: 190 PSNIPRFFDYPFQAIDP--------MFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQG 241 R D+ + P ++ GE A L F + + Y RD P + Sbjct: 170 GQAGDRLDDWRLRPTAPDWAAGWRDLWHPGEAGAAERLEHFLEAGLDGYATLRDRPDLSH 229 Query: 242 TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSV 301 S+LSP+L G +SPRQ R + + A +L E+ WREF HL+ +P + Sbjct: 230 VSRLSPHLHFGEVSPRQVVARTRFA-AGRTPGLERDADKFLAEIGWREFSHHLLYHFPRL 288 Query: 302 CMGKPFIPWTEKIE---WNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITA 358 P W + W S L W++G TG+P++DA MR+L G+MHNR+RM+ A Sbjct: 289 ----PERNWKSTFDAYPWRDSSGDLAVWQRGQTGYPMVDAGMRELWATGYMHNRVRMLAA 344 Query: 359 SFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRF 418 SFLVK L +DWR+GE +F L+D DLA+N GWQW A +G D+ PYFRIF+P QG+RF Sbjct: 345 SFLVKHLRLDWRLGEAWFRDTLVDADLANNAAGWQWVAGSGADAAPYFRIFSPVGQGRRF 404 Query: 419 DPQGTFIRHWLPELNNVPTQYIHAPHSW------LDKNDLSLNYPLPIVDHKKACHHTLN 472 DP G ++R W PEL +P ++HAP +L YP PIVDH A L Sbjct: 405 DPGGAYVRRWCPELARLPDDHVHAPFDAPAVVLKAAGVELGRTYPHPIVDHAAARAEALA 464 Query: 473 QYYAAKKQS 481 Y A ++ Sbjct: 465 GYEAVRRAG 473 >gi|78183823|ref|YP_376257.1| deoxyribodipyrimidine photolyase [Synechococcus sp. CC9902] gi|78168117|gb|ABB25214.1| Deoxyribodipyrimidine photo-lyase type I [Synechococcus sp. CC9902] Length = 477 Score = 247 bits (630), Expect = 4e-63, Method: Compositional matrix adjust. Identities = 167/468 (35%), Positives = 234/468 (50%), Gaps = 26/468 (5%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPE--QWRQH--GISARQSHFIYASLL 66 L W R DLR+ DN + AA S A V V++ P Q Q ++ + F+ SL+ Sbjct: 7 LFWHRRDLRLADNLGIQAAVEISPA-VTGVYVLDPALIQPPQSLPPMAPARLWFLLESLI 65 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 ++Q+ G + D ++ L + + +NR E RD+ + KR Sbjct: 66 ELQQRWRAAGSRLLILE----GDPVQVLPPLAERLGAEAVVWNRDVEPYSRERDRQVAKR 121 Query: 127 LQHRVICKSFD-DSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPA--IR 183 LQ D D +L+PP + A Y+VY PF + + ++ P+ + Sbjct: 122 LQADGRKVVVDWDQLLIPPELLKTGAGDPYRVYGPFLRNWRGKVQAQQPITIEAPSGLVD 181 Query: 184 LTGPVTPSNIPR---FFDYPFQAID--PMFPIGEQNALHILRKFCKEKVYYYVEQRDIPA 238 L + P P + FQ + P P GE AL L F + Y R+ P+ Sbjct: 182 LHSDLVPDRDPLAALLHRHGFQGTEICPCRP-GESAALEQLTLFADGPLSGYEPDRNFPS 240 Query: 239 IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFS-WLNELIWREFYRHLMAF 297 + GTS LS LS+G LSPRQ W ++ + A + W EL WREFY+ + Sbjct: 241 VVGTSYLSAALSVGTLSPRQAWCAAQQGRDHARSDEQRTAIAVWEQELGWREFYQQALFH 300 Query: 298 YPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMIT 357 +P + G P+ + W + +W++G TG PIIDAAMRQLN GWMHNR RMI Sbjct: 301 FPELADG-PYREQWRRFPWENNEAWFSSWREGMTGMPIIDAAMRQLNESGWMHNRCRMIV 359 Query: 358 ASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKR 417 ASFLVKDL+ DWR GE FM +DGDLA+NNGGWQW+AS+G D P RIFNP Q + Sbjct: 360 ASFLVKDLICDWRWGERAFMELEVDGDLAANNGGWQWSASSGMDPKP-LRIFNPATQATK 418 Query: 418 FDPQGTFIRHWLPELNNVPTQ-YIHAPHSWLDKNDLSLNYPLPIVDHK 464 FD G +IR W+PEL +V T+ + L++ YP P++ HK Sbjct: 419 FDADGEYIRRWVPELRHVNTKDLLTGEIGGLERR----GYPEPLITHK 462 >gi|254430204|ref|ZP_05043907.1| deoxyribodipyrimidine photolyase [Cyanobium sp. PCC 7001] gi|197624657|gb|EDY37216.1| deoxyribodipyrimidine photolyase [Cyanobium sp. PCC 7001] Length = 504 Score = 247 bits (630), Expect = 4e-63, Method: Compositional matrix adjust. Identities = 182/502 (36%), Positives = 240/502 (47%), Gaps = 51/502 (10%) Query: 1 MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHF 60 M A T L W R DLR+ DN L AA + A V VF+ P ++ + F Sbjct: 1 MAAETGAERWLFWHRRDLRLADNLGLAAAAAATPA-VTGVFVLDPGILEAADLAPARLWF 59 Query: 61 IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120 + SL ++ + G + D L R L +NR E RD Sbjct: 60 LAESLRELAERWRAAGSRLLVLR----GDPAVVLPQLAAALRAPVLAWNRDVEPYGRERD 115 Query: 121 KLLEKRLQ---HRVICKSFDDSVLLPPGSILNHALQMYKVYTPF-RKALIQNLVQADLRS 176 + + LQ RV+ D +L+ P ++ Y+VY PF R Q +ADL S Sbjct: 116 RRVAAALQAEGRRVLVDW--DQLLIAPEALRTGQGDPYRVYGPFWRNWRGQVAARADLGS 173 Query: 177 L------PVPA---IRLTGPVTPSNIPRFFDYPFQAIDP----------MFP-------- 209 PV A +R G + R P ++P FP Sbjct: 174 AAAGGLEPVAAPTGLRDLGEPELQALHRSTASPLPLVEPDAATGLHLPHSFPGADLCPCR 233 Query: 210 IGEQNALHILRKFCKEK-----VYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLK 264 GE A L+ FC + Y + R++P GTS LS L G LSPRQ W + Sbjct: 234 PGEAAAQEQLQAFCDGGCDGGPLLAYEQGRNLPGEAGTSGLSAALKFGTLSPRQAWAAAQ 293 Query: 265 EEFVDLLIKPKSGAFS-WLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLL 323 + + + W EL WREFY+ + +P + G P+ P ++ W D Sbjct: 294 QARALARSTEAEQSITVWEQELAWREFYQQALFHFPELAEG-PYRPQWKRFPWENDEGRF 352 Query: 324 QAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDG 383 +AW+QG TG PI+DAAMRQLN GWMHNR RMI ASFLVKDL+ DWR GE FM+QL+DG Sbjct: 353 EAWRQGLTGMPIVDAAMRQLNESGWMHNRCRMIVASFLVKDLICDWRWGERAFMAQLVDG 412 Query: 384 DLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPT-QYIHA 442 DLA+NNGGWQW+AS+G D P RIFNP Q +FDP+ ++IR WLPEL +V T I Sbjct: 413 DLAANNGGWQWSASSGMDPKP-LRIFNPATQATKFDPEASYIRTWLPELRHVATADLISG 471 Query: 443 PHSWLDKNDLSLNYPLPIVDHK 464 L++ YP PIV+HK Sbjct: 472 AIPPLERR----GYPEPIVEHK 489 >gi|15790367|ref|NP_280191.1| photolyase/cryptochrome [Halobacterium sp. NRC-1] gi|10580849|gb|AAG19671.1| photolyase/cryptochrome [Halobacterium sp. NRC-1] Length = 489 Score = 246 bits (629), Expect = 4e-63, Method: Compositional matrix adjust. Identities = 164/494 (33%), Positives = 235/494 (47%), Gaps = 24/494 (4%) Query: 1 MKATTAMSVHLVWLRNDLRITDNKALYAAC-------HNSDAKVIAVFIATPEQWRQHGI 53 M A + L W R DLR TDN+ L AA D +A ++ H Sbjct: 1 MPAAQPPGMQLFWHRRDLRTTDNRGLAAAAPGVTAVDGGHDQGPVAAVFCFDDEVLAHAA 60 Query: 54 SARQSHFI--YASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQ 111 R + + A+L + + L IV D L + T++ +N Sbjct: 61 PPRVAFMLDALAALRERYRDLGSDLIV-------RHGDPAAVLPAVANDLDATRVVWNHD 113 Query: 112 YEINEVRRDKLLEKRLQHRVICKS-FDDSVLLPPGSILNHALQMYKVYTPF-RKALIQNL 169 Y RD + L + + F D+V PG I +A Y VYT F RK + Sbjct: 114 YSGLATDRDAGVRDALDAAGVAHAQFHDAVHHRPGEIRTNAGDPYSVYTYFWRKWQDREK 173 Query: 170 VQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFP-IGEQNALHILRKFCKE-KV 227 P T S +P + F + P G A +L F + + Sbjct: 174 NPPAPEPEPADLAADTALADTSPLPSVQELGFAEPEAAVPDAGTAAARSLLDAFRESGDI 233 Query: 228 YYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDL-LIKPKSGAFSWLNELI 286 Y Y ++RD P + TS+LSP+L G + R + + D + +++ +L Sbjct: 234 YRYEDRRDYPHEEPTSRLSPHLKFGTIGIRTVYEAARAAKSDADTDDERENVAAFIGQLA 293 Query: 287 WREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTI 346 WREFY ++ F +V + + F + IEW D LQAWK G TG+PI+DA MRQL Sbjct: 294 WREFYAQVLYFNQNV-VSENFKAYEHPIEWRDDPAALQAWKDGETGYPIVDAGMRQLRAE 352 Query: 347 GWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYF 406 +MHNR+RMI A+FL KDLLVDWR G ++F +L D D A++NGGWQWAASTG D+ PYF Sbjct: 353 AYMHNRVRMIVAAFLTKDLLVDWRAGYDWFREKLADHDTANDNGGWQWAASTGTDAQPYF 412 Query: 407 RIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPH--SWLDKNDLSLNYPLPIVDHK 464 R+FNP QG+R+DP +I ++PEL +VP IH+ H S ++ + YP PIVDH Sbjct: 413 RVFNPMTQGERYDPDADYITEFVPELRDVPADAIHSWHELSLSERRRHAPEYPDPIVDHS 472 Query: 465 KACHHTLNQYYAAK 478 + + + A+ Sbjct: 473 QRREDAIAMFERAR 486 >gi|189346874|ref|YP_001943403.1| Deoxyribodipyrimidine photo-lyase [Chlorobium limicola DSM 245] gi|189341021|gb|ACD90424.1| Deoxyribodipyrimidine photo-lyase [Chlorobium limicola DSM 245] Length = 473 Score = 246 bits (629), Expect = 4e-63, Method: Compositional matrix adjust. Identities = 166/498 (33%), Positives = 248/498 (49%), Gaps = 52/498 (10%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 +++H W R DLR+ DN +LY A V+ V+I + +++ SL Sbjct: 5 LTIH--WFRQDLRLEDNPSLYYAALK--GSVLPVYILDDRNAGDFRMGGANRWWLHHSLE 60 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 + +SL + + D +E L + TK+++NR YE + RD L+ + Sbjct: 61 SLNRSLQGRLTLL-------MGDPLEILPALAASTGATKVYWNRCYEPWRISRDTRLKHK 113 Query: 127 LQHR-VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVP-AIRL 184 L+ + + +S++ S+L P + YKV+TPF + + + A +P+P ++L Sbjct: 114 LREQGITAESYNGSMLWEPWEVHKSDGTPYKVFTPFYR---KGCLSAASPRMPLPLPVKL 170 Query: 185 TGPVTPSN---------IPRF-FDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQR 234 P P +PR +D + ++P + IGE AL L F K + Y E R Sbjct: 171 DCPSPPEESLPLEALGLLPRIRWD---RQLEPHWTIGENGALERLAIFLKHGLPGYREGR 227 Query: 235 DIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAF--SWLNELIWREFYR 292 D PA S+LSP L G +SP Q W+ I SG + +EL WREF Sbjct: 228 DFPARPNVSRLSPSLHFGEISPNQAWHGA--------IAAGSGIDLDHFQSELAWREFSY 279 Query: 293 HLMAFYPSV---CMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWM 349 L+ P + + K F ++ W ++ L W+QG TG+PI+DA MR+L G+M Sbjct: 280 SLLYHNPGLPEKNLQKSF----DRFPWEENPAALMRWQQGLTGYPIVDAGMRELWQTGYM 335 Query: 350 HNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIF 409 HNR+RM+ SFLVK+LL+ W GE +F L D DLA N+ WQW A G D+ PYFRIF Sbjct: 336 HNRIRMVAGSFLVKNLLLHWHEGESWFRDCLADADLAINSASWQWIAGCGADAAPYFRIF 395 Query: 410 NPTIQGKRFDPQGTFIRHWLPELNNVPTQYI----HAPHSWLDKNDLSLN--YPLPIVDH 463 NP QG++FD G++ R +LPEL +P +Y+ AP S L ++ YP PIVD Sbjct: 396 NPVTQGQKFDADGSYTRRYLPELARLPDRYLFSPWEAPVSVLADAGIATGKTYPEPIVDL 455 Query: 464 KKACHHTLNQYYAAKKQS 481 K + L Y + S Sbjct: 456 KSSRRQALEAYALTRNHS 473 >gi|325003004|ref|ZP_08124116.1| deoxyribodipyrimidine photo-lyase [Pseudonocardia sp. P1] Length = 464 Score = 246 bits (629), Expect = 4e-63, Method: Compositional matrix adjust. Identities = 161/482 (33%), Positives = 232/482 (48%), Gaps = 33/482 (6%) Query: 6 AMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASL 65 A S +VW R DLR+ D + + A ++ + +A+F+ P G + R +F+Y L Sbjct: 2 ASSTAVVWFRRDLRVAD-QPTFLAAADAADRALALFVLDPALLDPSGAARR--NFLYGCL 58 Query: 66 LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125 ++ +L + +V + + + + Y R+ RD+ +EK Sbjct: 59 RELDSALGGRLLVVKGDPADVVPRVATAVGADTVHVAADYGPYGRE-------RDEQVEK 111 Query: 126 RLQHR-VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL 184 L + PG + +KV+TPF +A ++ +A + + Sbjct: 112 ALTDAGAELVRTGSPYAVAPGRVTKGDGDPFKVFTPFSRAWAEHGWRAPAETSASTCTWM 171 Query: 185 TGPVTPSNIPRFFDYPF-QAIDPMFP-IGEQNALHILRKFCKEKVYYYVEQRDIPAIQGT 242 P PR P + D P GE A F E V Y QRD+PA +GT Sbjct: 172 D-PSGKGGGPRAVQVPADEPCDSALPDAGETAAAARWADFLDEGVAEYESQRDMPAKKGT 230 Query: 243 SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVC 302 S +SPYL G + PR DL + ++ E+ WREFY ++ P Sbjct: 231 SGMSPYLKYGCVHPRTL-------LADLGSRRGDSVKAYRTEIAWREFYADVLYRRPDSA 283 Query: 303 -----MGKPFIPW-TEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMI 356 G +P T++ ++ L+ WK G TGFPI+DA MRQL WMHNR+RM+ Sbjct: 284 RRNYDTGFDHLPLRTDEAAYDD----LERWKDGRTGFPIVDAGMRQLRAEAWMHNRVRMV 339 Query: 357 TASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGK 416 ASFLVKDL + W G +FM L+DGDLASN GWQW A +G D+ PYFRIFNP QG+ Sbjct: 340 VASFLVKDLHLPWWWGARHFMQLLVDGDLASNQHGWQWTAGSGTDAAPYFRIFNPITQGE 399 Query: 417 RFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYA 476 RFDP G ++R W+PEL +VP + +H P W K+ L YP +V+HK L +Y A Sbjct: 400 RFDPDGDYVRRWVPELADVPGKAVHQP--WKLKDGLPDGYPERMVEHKAEREEALARYEA 457 Query: 477 AK 478 K Sbjct: 458 VK 459 >gi|307825778|ref|ZP_07655994.1| Deoxyribodipyrimidine photo-lyase [Methylobacter tundripaludum SV96] gi|307733086|gb|EFO03947.1| Deoxyribodipyrimidine photo-lyase [Methylobacter tundripaludum SV96] Length = 453 Score = 246 bits (629), Expect = 4e-63, Method: Compositional matrix adjust. Identities = 166/467 (35%), Positives = 227/467 (48%), Gaps = 42/467 (8%) Query: 8 SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQS-HFIYASLL 66 S L R DLR+ DN AL A S +VI FI P Q H ++ F+ S+ Sbjct: 5 STSLFIFRRDLRLQDNTALLEALRLS-GQVIPCFIFDPRQIEPHPYQSKPGLQFMLQSIQ 63 Query: 67 QVQKSL-SQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125 +Q+ L S G + YH + + QQ++ +F NR Y RRD L Sbjct: 64 DLQQQLQSAGGKLALYHALPE-----QVVRQLVEQQQIQAVFINRDYTPFSRRRDDELA- 117 Query: 126 RLQHRVICKSFDDSVLLPPGSILN---HALQM----YKVYTPFRKALIQNLVQADLRSLP 178 +CK ++ P S+LN A++M YKV+T F Q V +LP Sbjct: 118 -----AVCKQLGIALHTLPDSLLNEPEQAVKMDKTPYKVFTAFYNNAKQFPV-----ALP 167 Query: 179 VPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPA 238 ++ S +P G + AL IL + Y+ RD PA Sbjct: 168 EVLVKSNFLAAASEF-TIDQLDLSVTEPAIKGGRKQALAILDRLGD--YVDYLNTRDFPA 224 Query: 239 IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFY 298 + TS+LS +L G S R+ + + E+ + +L WR+F+ H+ + Sbjct: 225 LDATSKLSAHLKFGTCSVREVFYAITEQL--------GSEHPLIRQLYWRDFFTHIAYHF 276 Query: 299 PSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITA 358 P V G+ F+ + W+ + QAW G TGFPI+DA MR+LN G+MHNR+RMITA Sbjct: 277 PQV-FGRAFLEKFADLTWDNNPDYFQAWCDGKTGFPIVDAGMRELNATGYMHNRVRMITA 335 Query: 359 SFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRF 418 SFLVKDL +DWR GE YF L+D D NNG WQW ASTG D+ PYFRI NP +Q +F Sbjct: 336 SFLVKDLHIDWRWGERYFARHLVDYDPCVNNGNWQWTASTGCDAQPYFRILNPWLQQLKF 395 Query: 419 DPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKK 465 D +I WLPEL P + I H W DK + +YP PI+DH + Sbjct: 396 DQDCRYIYRWLPELQAFPPKTI---HQW-DKKHSACSYPAPIIDHAR 438 >gi|56552346|ref|YP_163185.1| deoxyribodipyrimidine photo-lyase [Zymomonas mobilis subsp. mobilis ZM4] gi|56543920|gb|AAV90074.1| Deoxyribodipyrimidine photo-lyase [Zymomonas mobilis subsp. mobilis ZM4] Length = 469 Score = 246 bits (629), Expect = 4e-63, Method: Compositional matrix adjust. Identities = 161/481 (33%), Positives = 251/481 (52%), Gaps = 42/481 (8%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 L+W R+D R+ DN A+ AA + + VI +I + + ++ SLL + + Sbjct: 8 LIWFRHDFRLRDNAAITAAIQSRNP-VICFYIQESADAKTESAA---DWWVAESLLALNR 63 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQ-RVTKLFYNRQYEINEVRRDKLLEKRLQH 129 L +KG Q F+ E + +QQ KLF+NR+Y+ D++L+K ++ Sbjct: 64 QLKEKG-----GQLHLFEGDAEKIIPEIVQQSHACKLFWNRRYDFKGKETDQILKKSIRA 118 Query: 130 RVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNL-VQADLRSLPVPAIRLTGP 187 + +SF +++L P ++ N Q +++++ + +A+ +++ +QA LP P + Sbjct: 119 MGLEVQSFPNNLLNEPWTVKNDKGQPFRIFSAYWRAVQRHMNIQA---VLPCPENWV--- 172 Query: 188 VTPSNIPRFFDYPFQAI------DPMFPI--------GEQNALHILRKFCKEKVYYYVEQ 233 + I Y AI D + I GE A L+ F + + +Y ++ Sbjct: 173 FSTREIRHCLGYKDIAILAKETQDSSWKIKLKQSHRFGENEAHKQLKSFIENDLAHYAKE 232 Query: 234 RDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRH 293 RD PA GTS LS +L G +S +Q W+ + + G +L EL WREF Sbjct: 233 RDFPAKDGTSLLSAFLRSGQISSKQIWHEVTKN------GSGEGTSKFLEELGWREFAWS 286 Query: 294 LMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRL 353 ++ +P + P +K+ W K S LQ WK+G TG+P IDA MR L G+M NRL Sbjct: 287 VLWEHPDLNQHN-LRPEFDKMPWKKASDNLQRWKEGQTGYPFIDAGMRALWQTGFMPNRL 345 Query: 354 RMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTI 413 RM+TASFLVK LL+DWR G+++F L+D D A N WQW A +G +S PYFRI NP + Sbjct: 346 RMVTASFLVKHLLIDWREGKKWFAQTLVDYDPACNATNWQWVAGSGIESAPYFRIMNPIL 405 Query: 414 QGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQ 473 Q ++FDP G +IR W+ EL +V T +IH P + NYPLPI+ H++ + L Sbjct: 406 QSQKFDPDGQYIREWVKELADVSTAFIHTP---WKADKQPANYPLPIIAHEEGRNRALRA 462 Query: 474 Y 474 + Sbjct: 463 W 463 >gi|134302129|ref|YP_001122098.1| deoxyribodipyrimidine photolyase [Francisella tularensis subsp. tularensis WY96-3418] gi|134049906|gb|ABO46977.1| deoxyribodipyrimidine photolyase [Francisella tularensis subsp. tularensis WY96-3418] Length = 464 Score = 246 bits (629), Expect = 5e-63, Method: Compositional matrix adjust. Identities = 163/490 (33%), Positives = 253/490 (51%), Gaps = 56/490 (11%) Query: 4 TTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYA 63 + +++H W R DLR+ DN ALY + I +FI Q I + +++ Sbjct: 2 SKKIAIH--WFRQDLRLADNPALYQVSQADE--TITIFILDKNQ----DIGSASKLWLHH 53 Query: 64 SLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLL 123 SL + SL K + + +E + + +T ++NR Y+ + RD + Sbjct: 54 SLNSLNSSLDNKLNFYS-------GNPLEIIKKIIKENNITDFYWNRCYDKYSIDRDTQI 106 Query: 124 EKRLQ-HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQ------NLVQAD--- 173 ++ LQ H++ SF+ S+L+ P YKVYTPF K LI+ N+ + + Sbjct: 107 KQFLQQHKINVNSFNGSLLIEPWQCKKDDGTHYKVYTPFYKELIKIRKYRSNIAKPNFSY 166 Query: 174 LRSLP----VPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYY 229 LR L + +++L P + +Q I + IGE + IL +F KV Sbjct: 167 LRKLNNSENLDSLKLIEP----------KHSWQNIIKQWQIGESASHQILEEFLDNKVKE 216 Query: 230 YVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWRE 289 Y RD + TS+LSPYL G +SP Q +N ++ +D + + ++ EL+WR+ Sbjct: 217 YKTARDFMSTDSTSKLSPYLHFGEISPNQIFNAVQS--LDYI---GNNEEHFIKELVWRD 271 Query: 290 FYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWM 349 F + + +YP + K + +W+ D LL+ W++G TG PI+DA MR+L G+M Sbjct: 272 FSYYQIYYYPEL-HNKNINQKFDSFKWDNDPTLLKKWQKGQTGIPIVDAGMRELWQAGYM 330 Query: 350 HNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIF 409 HNR+RMI ASFL+K+ L+ W+ GE++F L D D ASNN WQW A G D+ PYFRIF Sbjct: 331 HNRVRMIVASFLIKNCLIHWKYGEKWFFDTLFDADFASNNANWQWVAGCGLDAAPYFRIF 390 Query: 410 NPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSW------LDKNDLSL--NYPLPIV 461 NP +Q ++F+ +IR ++PEL +P + I P W L + ++L NYP PIV Sbjct: 391 NPVLQAEKFEAY-EYIRKYVPELKLLPNKLIAKP--WEASELVLQEAGITLGQNYPKPIV 447 Query: 462 DHKKACHHTL 471 D KK+ L Sbjct: 448 DLKKSRDRAL 457 >gi|254481485|ref|ZP_05094729.1| deoxyribodipyrimidine photolyase family protein [marine gamma proteobacterium HTCC2148] gi|214038113|gb|EEB78776.1| deoxyribodipyrimidine photolyase family protein [marine gamma proteobacterium HTCC2148] Length = 483 Score = 246 bits (629), Expect = 5e-63, Method: Compositional matrix adjust. Identities = 162/494 (32%), Positives = 246/494 (49%), Gaps = 42/494 (8%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 + W R DLR+TD L+AA S VI FI E + + +++ SL + K Sbjct: 8 IYWFRRDLRLTDLPGLHAAL-ASGKPVIPCFILDDESTEEWAMGGASRWWLHHSLQALTK 66 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL-QH 129 S++++G + D+ L++ + ++ + YE + +K L + L + Sbjct: 67 SVAEQGGNLLVRR----GDTQAQLNALVNETGAAAVYCSELYEPDARELEKTLGEELAKS 122 Query: 130 RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAI------- 182 ++ P + N + +KV+TPF + +Q L S+P+P Sbjct: 123 GAALHCLPGTLFFRPHEVRNGSGLPFKVFTPFWRHCMQRLP-----SMPLPQKTTFTTNS 177 Query: 183 ----RLTGPVTPSNIPRFFDYPFQAID--PMFPIGEQNALHILRKFCKEKVYYYVEQRDI 236 LTG ++ D P A D + GE A L++F + Y + RD Sbjct: 178 FLQHSLTG-LSCEQWQLLPDSPNWAADWHSYWTPGEAGATETLKQFVTNTLADYAQGRDF 236 Query: 237 PAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGA---FSWLNELIWREFYRH 293 PA +S+LS + G +SPRQ W + + P S +L+EL WR+F H Sbjct: 237 PARDASSRLSAHFHWGEISPRQAWAAVNK-------APGSNEKDQHKFLSELGWRDFNHH 289 Query: 294 LMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRL 353 L+ +P + +PF P ++ W +AW +G TG+PI+DA MR+L G+MHNR+ Sbjct: 290 LLFHFPHIA-DRPFKPSFSQMPWQGSDETFKAWCEGRTGYPIVDAGMRELWQTGFMHNRV 348 Query: 354 RMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTI 413 RMI ASFL K LL+ W+ G +F L+D DLA+N+GGWQW A G D+ P+FRIFNP + Sbjct: 349 RMICASFLTKHLLLPWQWGARWFWDTLVDADLANNSGGWQWVAGCGADASPWFRIFNPML 408 Query: 414 QGKRFDPQGTFIRHWLPELNNVPTQYIH----APHSWLDKNDLSL--NYPLPIVDHKKAC 467 QGK+FD G ++R WLPEL + + + AP L ++L +YP PIVDHK+A Sbjct: 409 QGKKFDGDGEYVRRWLPELAGLSDRDLQIPWEAPPLVLADAGVTLGSDYPFPIVDHKEAR 468 Query: 468 HHTLNQYYAAKKQS 481 L+ Y A K S Sbjct: 469 VAALDAYDAVSKAS 482 >gi|296283766|ref|ZP_06861764.1| deoxyribodipyrimidine photolyase [Citromicrobium bathyomarinum JL354] Length = 467 Score = 246 bits (628), Expect = 5e-63, Method: Compositional matrix adjust. Identities = 169/492 (34%), Positives = 252/492 (51%), Gaps = 50/492 (10%) Query: 8 SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQW--RQHGISARQSHFIYASL 65 S +VWLR DLR+ DN ALYAA +I VF+ E+ R++G ++R +++ SL Sbjct: 3 SPQIVWLRRDLRLADNPALYAAAQA--GPIIPVFVLDDERTGDRKYGDASRW--WLHHSL 58 Query: 66 LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125 + +S + + DS+ L + + + NR YE + L+K Sbjct: 59 ESLARSFGRHNASLILRRG----DSVNILADLAAKTGASAIHANRHYEPWWRKAQGDLKK 114 Query: 126 RLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVP-AIRL 184 L + D + L+P G+ + YK+YTPF + + + D LP P I Sbjct: 115 ALPEGCDLELHDGNYLMPLGTATTGSGDPYKIYTPFSRTMRDLMPPRD--DLPAPETISQ 172 Query: 185 TGPVTPSNIPRFFDYPFQAIDP--------MFPIGEQNALHILRKFCKEKVYYYVEQRDI 236 G + PS+ D+ +P + IGE +A H + + V Y E R++ Sbjct: 173 PGDLPPSD--DLADWSLLPTNPDWSTEMAKFWSIGE-DAAHERLDWWADHVGEYDEGRNL 229 Query: 237 PAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMA 296 P++ TSQ+SP+L G +SP Q W+R+K++ D G ++ +ELIWR++ ++++ Sbjct: 230 PSVDQTSQMSPHLHWGEISPVQIWHRMKDKRSD-------GWRTYESELIWRDYAQNVLC 282 Query: 297 FYPSVCMGKPFIPWTEKIEWNK------DSHLLQ----AWKQGYTGFPIIDAAMRQLNTI 346 +P P + + I+ K H++Q AW+ G TG+PI+DA MRQL I Sbjct: 283 QFPRY----PEESYRDAIDDAKLWRNPNRGHVIQEELEAWQYGRTGYPIVDAGMRQLWAI 338 Query: 347 GWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYF 406 GWMHNR+RMI ASFL+K LL+DWR GE +F L+D D ASN WQW A TG DS + Sbjct: 339 GWMHNRVRMIAASFLIKHLLIDWRHGERWFWDTLVDADYASNGTNWQWVAGTGVDSNMFP 398 Query: 407 RIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKA 466 RI P Q ++FD ++IR W+PEL ++P IH P ND YP I+ HK+A Sbjct: 399 RIMAPLSQSEKFD-AASYIREWVPELADLPDSEIHDPSDKCRPND----YPAKIIGHKEA 453 Query: 467 CHHTLNQYYAAK 478 L Y A K Sbjct: 454 RERALEAYRAMK 465 >gi|84684767|ref|ZP_01012667.1| deoxyribodipyrimidine photolyase [Maritimibacter alkaliphilus HTCC2654] gi|84667102|gb|EAQ13572.1| deoxyribodipyrimidine photolyase [Rhodobacterales bacterium HTCC2654] Length = 475 Score = 246 bits (628), Expect = 6e-63, Method: Compositional matrix adjust. Identities = 160/493 (32%), Positives = 244/493 (49%), Gaps = 38/493 (7%) Query: 6 AMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASL 65 + S ++W R DLR++D+ AL+AA + VI +FI G+ A + L Sbjct: 2 SASTVILWFRRDLRLSDHPALWAAANA--GLVIPLFIRDQSV---DGLGAAAKWRLGEGL 56 Query: 66 LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125 ++L +G+ + + D L + T++ ++R Y+ + RD ++ Sbjct: 57 RVFGEALEDRGLKLILRRGNARDV----LREVIEETGATEVHWSRLYDPEAIERDTDVKS 112 Query: 126 RLQHR-VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL 184 L+ ++ +S ++ P ++ YKVY+PF +A+ V P+P L Sbjct: 113 ALKEAGIVAESHPGHLIFEPWTVETQTGGPYKVYSPFWRAVKDRDVDE-----PLPTPDL 167 Query: 185 TGPVTPSNIPRFFDYPFQA--------IDPMFPIGEQNALHILRKFCKEKVYYYVEQRDI 236 TGP + + D+ A + GE+ A L F +K+ Y RD+ Sbjct: 168 TGPESWPDSDDLADWALGADMNRGAGVLAKYCNPGERAATSRLGSFVAQKIDAYKADRDL 227 Query: 237 PAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMA 296 PA TS++S YL+ G +SPRQ W + K+GA +L E++WREF HL+ Sbjct: 228 PAEDATSRMSEYLTYGEISPRQLWA----AGARAMDAGKAGAEHYLKEVVWREFAYHLLY 283 Query: 297 FYPSVCMGKPFIPWTEKIEWNKDSHL--LQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLR 354 +P + W + W +D L ++AWKQG TG P +DAA+R++ G+MHNR R Sbjct: 284 HFPQMLTENWREGW-DDFPWREDERLAEVKAWKQGRTGVPFVDAALREMYVTGYMHNRAR 342 Query: 355 MITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQ 414 MI AS+L K ++ WR+G+ +F L D D ASN GWQW A G D+ PYFR+FNP Q Sbjct: 343 MIVASYLTKHCMIHWRVGQAWFDDCLTDWDPASNAMGWQWVAGCGPDAAPYFRVFNPETQ 402 Query: 415 GKRFDPQGTFIRHWLPELNNVP----TQYIHA-PHSWLDKNDLSLNYPL-PIVDHKKACH 468 G++FDP+GT+ + W+ E P T Y A P SW K + NYP P+V K+ Sbjct: 403 GEKFDPKGTYQKRWIAEGQTSPPETATDYFEAIPRSW--KMEPGGNYPREPVVGLKEGRE 460 Query: 469 HTLNQYYAAKKQS 481 L Y A K S Sbjct: 461 AALAAYEARPKAS 473 >gi|299135199|ref|ZP_07028390.1| DNA photolyase FAD-binding [Afipia sp. 1NLS2] gi|298590176|gb|EFI50380.1| DNA photolyase FAD-binding [Afipia sp. 1NLS2] Length = 485 Score = 246 bits (628), Expect = 6e-63, Method: Compositional matrix adjust. Identities = 170/503 (33%), Positives = 244/503 (48%), Gaps = 42/503 (8%) Query: 1 MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHG---ISARQ 57 M A A ++ VW R+DLR++D+ AL AA ++ A +I +++ + +HG + A Sbjct: 1 MNAPAATAI--VWFRDDLRLSDHAALIAA-RDAGATLICLYVLDDTETGKHGPRSLGAAA 57 Query: 58 SHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEV 117 ++ SL + L + G H D+ E L + +F+ E Sbjct: 58 QWWLANSLRALDTDLKKLG----QHLVLRRGDAHEVLPKLAREANAKAVFWIDSEVSAEA 113 Query: 118 RRDKLLEKRLQHRVICKSFDDSVLLP-PGSILNHALQMYKVYTPFRKALIQNLVQADLRS 176 R + + + L+ + S LL P SI N +V+TPF K + Q + Sbjct: 114 ARARDVAEALKEIGVEVHVSASDLLASPQSIRNKEGHGLRVFTPFWKRV---RAQGEP-P 169 Query: 177 LPVPAIR-LTGPVTPSNIPRFFDYPFQAIDP--------MFPIGEQNALHILRKFCKEKV 227 P+ A+R L PV D+ + P + GE A L F + Sbjct: 170 RPLAAVRKLPPPVVSLKSENLEDWQLEPTRPDWAGGFRETWTPGEAGAHRRLHDFLDGAI 229 Query: 228 YYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWN--RLKEEFVDLLIKPKSGAFSWLNEL 285 Y E RD P S LSP+L G +SPRQ ++ R E L + +L+EL Sbjct: 230 KGYAEGRDFPGKDHASHLSPHLRFGEISPRQVFHAARFAAERHPALSRDIE---KFLSEL 286 Query: 286 IWREFYRHLMAFYPSV---CMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQ 342 WREF RHL+ +P + + F + W +D+ L+AW+QG TG+PI+DA MR+ Sbjct: 287 GWREFCRHLLFDHPDLHRHNLQSSF----DDFPWRRDAKALRAWQQGRTGYPIVDAGMRE 342 Query: 343 LNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDS 402 L G M NR+RM+TASFLVK LL+DWR GE++F L+D D SN G WQW A G D+ Sbjct: 343 LWHTGAMQNRIRMVTASFLVKHLLLDWRDGEQWFWDTLVDADPGSNPGNWQWVAGCGADA 402 Query: 403 VPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKN------DLSLNY 456 PYFRIFNP +QG++FDP G ++ W+PEL+ +P IH P L Y Sbjct: 403 APYFRIFNPILQGEKFDPDGAYVARWVPELSKLPPALIHKPWEATPMELAAAGVTLGKTY 462 Query: 457 PLPIVDHKKACHHTLNQYYAAKK 479 P PIVDHK A L Y ++ Sbjct: 463 PEPIVDHKDARERALAAYRRTRR 485 >gi|312214969|emb|CBX94922.1| hypothetical protein [Leptosphaeria maculans] Length = 633 Score = 246 bits (628), Expect = 6e-63, Method: Compositional matrix adjust. Identities = 159/488 (32%), Positives = 239/488 (48%), Gaps = 48/488 (9%) Query: 17 DLRITDNKALYAA---CHNSDAKVIAVFI--ATPEQWRQHGISARQSHFIYASLLQVQKS 71 DLRI DN AL+ A + ++ V++ A E W HG SA + F+Y L +QK Sbjct: 155 DLRIQDNTALHHASQLAQKNKQHLVCVYVNCAADESW--HGTSAARVDFMYEGLKLIQKE 212 Query: 72 LSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHRV 131 L I + +C N D + + S+ +Q V+ +F N +YEI+E+RRD L K + + Sbjct: 213 LKDLNIPLVFLECENRKDIVSTVISWFKEQGVSHVFGNIEYEIDEIRRDIKLVKTIGDDI 272 Query: 132 ICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQAD---LRSLPVPAIRLTGPV 188 D ++ PG++L + + K++TP+ KA + ++V+ L + P PA+ Sbjct: 273 QVSLHHDQTVVEPGTMLTGSGKPMKIFTPYFKAWL-DIVKDQPSLLDTNPPPAVNPAS-- 329 Query: 189 TPSNIPRFFDYPF---------------QAIDPMFPIGEQNALHILRKFCKEKVYYYVEQ 233 ++ FD P + I +P G A + KF K + Y Sbjct: 330 AKQDLESLFDTPAPRPAKDKQFENDEDKKRIRKFWPPGYTAASTRMDKFLKH-IPNYAAT 388 Query: 234 RDIPAIQGTSQLSPYLSIGVLSPRQC------WNRLKEEFVDLLIKPKSGAFSWLNELIW 287 R P+ TS+LSPY S G+ S R +NR +F + +G ++W+ E+++ Sbjct: 389 RSDPSKDSTSRLSPYFSAGMYSVRSALRKVTDYNRGSTDFRESAAS--AGVYAWVREIVF 446 Query: 288 REFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIG 347 RE YR P M P + W + QAW G TG P +DA MRQL Sbjct: 447 RELYRQTTLCTPHTSMNLPQNLKFNSVRWEDNEDHWQAWINGQTGVPFVDAGMRQLAHEA 506 Query: 348 WMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFR 407 WMHNRLRM +S+L +LL+D+R GE YF L+D DL +N GW+ P + Sbjct: 507 WMHNRLRMNVSSYLYCNLLLDYRRGERYFAETLIDWDLGNNTQGWE----------PSYT 556 Query: 408 IFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLS-LNYPLPIVDHKKA 466 +FNPT Q ++ DP G FIR W+PEL NV + + APH L + L YP P VD ++ Sbjct: 557 VFNPTSQAEKNDPDGAFIRKWVPELRNVQGKAVFAPHERLSGTEFEQLGYPRPCVDWRQT 616 Query: 467 CHHTLNQY 474 L+++ Sbjct: 617 KERCLSRF 624 >gi|194334030|ref|YP_002015890.1| Deoxyribodipyrimidine photo-lyase [Prosthecochloris aestuarii DSM 271] gi|194311848|gb|ACF46243.1| Deoxyribodipyrimidine photo-lyase [Prosthecochloris aestuarii DSM 271] Length = 477 Score = 246 bits (627), Expect = 7e-63, Method: Compositional matrix adjust. Identities = 166/491 (33%), Positives = 253/491 (51%), Gaps = 42/491 (8%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFI---ATPEQWRQHGISARQSHFIYASLLQ 67 + W R DLR+ DN AL+ A + V+ V+I ++P W Q G + R +++ SL+ Sbjct: 7 ICWFRQDLRLEDNPALFVAAE--EGYVLPVYILDDSSPGTW-QMGSATR--CWLHHSLVS 61 Query: 68 VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127 + +S K +F+ + +E L + Q + K+ +NR YE ++RD+ ++ L Sbjct: 62 LNRSFDGKLGIFR-------GEPLEILKTLARQHKAEKIVWNRCYEPWRMKRDQGIKATL 114 Query: 128 QHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPF-RKALIQNL-----VQADLRSLPVP 180 Q I SF+ S+L P +L Y+V+TPF R+ + L + A R L Sbjct: 115 QAEGIEVSSFNGSLLWEPHEVLKQNNTPYRVFTPFFRRGCLNALPPRTPLPAPQRMLMAD 174 Query: 181 AIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ 240 I + V N+ + Q I + +GE +A L +F + + Y E RD P Sbjct: 175 TIDNSISVQDLNLLPSIPWDSQLIS-HWSVGENSARQSLLRFLDQGLNGYKEGRDFPGQN 233 Query: 241 GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAF--- 297 S+LSP L G LSP W K +L+EL WREF L+ Sbjct: 234 HVSRLSPALHFGELSPNTVWYEAKR------CGSGQDLDHFLSELGWREFAYTLLYHNHD 287 Query: 298 YPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMIT 357 P + F + W + L W+QG TG+P++DA MR+L G+MHNR+RMIT Sbjct: 288 MPEKNLQSAF----DAFPWVHNDETLIRWQQGMTGYPLVDAGMRELWQTGYMHNRVRMIT 343 Query: 358 ASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKR 417 SFLVK+LL+ W G+++F LLD DLA+N+ GWQW A G D+ PYFR+FNP QG++ Sbjct: 344 GSFLVKNLLLHWHYGQQWFHDCLLDADLANNSAGWQWIAGCGVDAAPYFRVFNPVRQGEK 403 Query: 418 FDPQGTFIRHWLPELNNVPTQYI----HAPHSWLDKNDLSLN--YPLPIVDHKKACHHTL 471 FDP GT+ ++PEL +P +Y+ AP + L + ++L YP PIVD + + L Sbjct: 404 FDPDGTYTLRFVPELAKLPKKYLFNPWEAPKNILQEAGITLGKTYPEPIVDLAISRNRAL 463 Query: 472 NQYYAAKKQSL 482 + Y + +K+ + Sbjct: 464 SAYASIRKKKI 474 >gi|325963959|ref|YP_004241865.1| deoxyribodipyrimidine photo-lyase type I [Arthrobacter phenanthrenivorans Sphe3] gi|323470046|gb|ADX73731.1| deoxyribodipyrimidine photo-lyase type I [Arthrobacter phenanthrenivorans Sphe3] Length = 478 Score = 246 bits (627), Expect = 7e-63, Method: Compositional matrix adjust. Identities = 166/485 (34%), Positives = 237/485 (48%), Gaps = 38/485 (7%) Query: 9 VHLVWLRNDLRITDNKALYAACH-NSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67 +VWLR+DLR+ DN AL AA V+ + E R G ++R +++ SL Sbjct: 7 TSIVWLRDDLRLDDNPALAAAVDLGLPLTVVYILDEDSEGVRPLGSASRW--WLHHSLAS 64 Query: 68 VQKSLSQKG--IVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125 + SL G ++ Q L LF+NR+Y + E D ++ Sbjct: 65 LASSLEASGSRLLLQRGPAEPI------LKDLAAATNAGHLFWNRRYGLPERTVDAAVKA 118 Query: 126 -RLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL 184 ++ + S+ ++L P +I A YKV+TPF +A L D+R +L Sbjct: 119 WAGENGIEALSYQANLLFEPWTIRTGAGGPYKVFTPFWRAC---LASGDVRDPLSAPPQL 175 Query: 185 ---------TGPV-----TPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYY 230 +GP T P D+ + + GE+ A L F + Y Sbjct: 176 PPPPAGKTGSGPAGDALETWRLFPSSPDWS-GGLAKTWEPGEEGARQRLEDFLEGSAQDY 234 Query: 231 VEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREF 290 R+IP ++GTS+LSP+L G +SP + W ++ F + G F +EL WREF Sbjct: 235 GTGRNIPGVEGTSRLSPHLRFGEVSPFRVWREIRGRFP-REVPADVGIFR--SELGWREF 291 Query: 291 YRHLMAFYPSVCMGKPFIPWTEKIEWNK-DSHLLQAWKQGYTGFPIIDAAMRQLNTIGWM 349 HL+ P + + F P ++ EW K L AW+QG TG+P +DA MRQL GWM Sbjct: 292 CWHLLYTNPDLAT-RNFRPEFDRFEWEKPGKDELAAWQQGRTGYPFVDAGMRQLWQTGWM 350 Query: 350 HNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIF 409 HNR+RM ASFLVK+LL DWR GE +F L+D D ASN WQW A +G D+ PY+RIF Sbjct: 351 HNRVRMAAASFLVKNLLADWRTGEAWFWDTLVDADAASNPANWQWVAGSGADASPYYRIF 410 Query: 410 NPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHH 469 NP Q K+FD G ++R ++PEL + + IH P W + L YP P+VD + Sbjct: 411 NPVTQSKKFDAAGNYLRQYIPELAGLEAKAIHEP--WKAADGLH-GYPRPLVDLPGSRER 467 Query: 470 TLNQY 474 L Y Sbjct: 468 ALAAY 472 >gi|78778672|ref|YP_396784.1| deoxyribodipyrimidine photo-lyase type I [Prochlorococcus marinus str. MIT 9312] gi|78712171|gb|ABB49348.1| deoxyribodipyrimidine photo-lyase type I [Prochlorococcus marinus str. MIT 9312] Length = 478 Score = 246 bits (627), Expect = 7e-63, Method: Compositional matrix adjust. Identities = 170/473 (35%), Positives = 242/473 (51%), Gaps = 35/473 (7%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISAR-QSHFIYASLLQVQ 69 L W R DLRI DN+AL A S+A + + +I ++ H SA ++ F+ SL ++ Sbjct: 7 LFWHRKDLRIFDNQALIKAFSLSNA-ITSTYIL--DRNYTHDFSANSRAWFLGDSLQELG 63 Query: 70 KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH 129 + + G + D + + + +N+ E E+ RD ++K L+ Sbjct: 64 NNWEKMGSRLVIEE----GDPVLIIPQLAKTIDAKFVIWNKTIEPYEINRDLQIKKNLKE 119 Query: 130 RVI--CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADL------------- 174 + I +S+D +L+ P I + + Y VY PF K L + L Sbjct: 120 KNIQVIESWD-HLLVEPLKIFSGNNKPYSVYGPFYKNLKSKMNLLGLYDQDKVIFQFKDI 178 Query: 175 -RSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEK-VYYYVE 232 L + + T + + I P P GE A +L KF EK +Y Y Sbjct: 179 DNKLKENKLINSSDSTLKKFLKNIKFSGSNICPCRP-GENGAEILLEKFINEKNIYSYNS 237 Query: 233 QRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAF-SWLNELIWREFY 291 RD+P+ GTS LS L G +S R+ WN + D S + +W EL+WREFY Sbjct: 238 ARDLPSHNGTSFLSASLRFGTISIRKVWNATLDLNSDFESHENSLSIETWQKELVWREFY 297 Query: 292 RHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHN 351 +H + +P + G W + W ++ Q W G TG PI+DAAMRQLN+ GWMHN Sbjct: 298 QHCLFHFPELEKGPYRKKWGQ-FPWQNNNEWFQHWSNGETGVPIVDAAMRQLNSTGWMHN 356 Query: 352 RLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNP 411 R RMI ASFLVKDL+ W++GE+ FM L+DGDLA+NNGGWQW+AS+G D P RIFNP Sbjct: 357 RCRMIVASFLVKDLICSWQMGEKKFMETLVDGDLAANNGGWQWSASSGMDPKP-LRIFNP 415 Query: 412 TIQGKRFDPQGTFIRHWLPELNNVP-TQYIHAPHSWLDKNDLSLNYPLPIVDH 463 Q K+FDP +I+ W+PEL+ V + ++ S L+KN NY PIVDH Sbjct: 416 YTQAKKFDPICEYIKSWIPELSKVSNSDLLNGEISNLEKN----NYSTPIVDH 464 >gi|115352268|ref|YP_774107.1| deoxyribodipyrimidine photo-lyase [Burkholderia ambifaria AMMD] gi|115282256|gb|ABI87773.1| deoxyribodipyrimidine photo-lyase type I [Burkholderia ambifaria AMMD] Length = 525 Score = 246 bits (627), Expect = 8e-63, Method: Compositional matrix adjust. Identities = 157/492 (31%), Positives = 247/492 (50%), Gaps = 29/492 (5%) Query: 1 MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHF 60 + A ++++ +VW R+DLR+TD AL A S ++ V++ + + Sbjct: 26 VSAKSSVAPAVVWFRDDLRVTDQPALTRAV-ASGRPLVCVYVDDTGDGAGRALGGAARWW 84 Query: 61 IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120 ++ +L + +L++ G H D+ ++ +++NR+Y + D Sbjct: 85 LHGALAALDAALARHG----GHLLLLRGDAQREIERIVHDTGAAAVYWNRRYAQPQRDAD 140 Query: 121 KLLEKRLQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPV 179 L+ L+ R + +S + S+L P ++ A ++V+T + +A+ ++ + + LP Sbjct: 141 AALKASLKARGLEVESSNGSLLNEPWEVMTGAGTPFQVFTAYWRAVRRD--RTVMAPLPE 198 Query: 180 PAIRLTGPVTPSNI-------------PRFFDYPFQAIDPMFPIGEQNALHILRKFCKEK 226 P R+ P+ + P D+ D E A L F Sbjct: 199 PE-RIAFHPWPAAVRERALALDALALRPHAPDWAGGLRDEWPAPDEAGAHARLDAFVHAS 257 Query: 227 VYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELI 286 + Y + RD P TS+LSP+L G +SPRQ W+ ++ +GA +L+EL Sbjct: 258 LAGYADTRDRPGEPATSRLSPFLRFGNVSPRQVWHAVQGATQAGGAACAAGAEKFLSELG 317 Query: 287 WREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTI 346 WREF L+ +P++ F + + W D L+AW++G TG+P++DA MR+L T Sbjct: 318 WREFSHVLLYHFPALATDN-FRAQFDAMPWRDDPAALRAWQRGLTGYPLVDAGMRELWTT 376 Query: 347 GWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYF 406 GWMHNR+RM+ ASFLVK LL+DWR GE +F L+D D A+N WQW A G D+ PYF Sbjct: 377 GWMHNRVRMVVASFLVKHLLIDWRAGERWFHDTLVDADAANNPANWQWVAGCGADAAPYF 436 Query: 407 RIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND------LSLNYPLPI 460 RIFNP QG++FDPQG ++R W+PEL + IHAP L L+YP PI Sbjct: 437 RIFNPVTQGRKFDPQGEYVRRWVPELAGLDAAAIHAPWEASAAQLAAAGVRLGLDYPAPI 496 Query: 461 VDHKKACHHTLN 472 VDH A L+ Sbjct: 497 VDHDGARRRALD 508 >gi|328675930|gb|AEB28605.1| Deoxyribodipyrimidine photolyase [Francisella cf. novicida 3523] Length = 464 Score = 246 bits (627), Expect = 8e-63, Method: Compositional matrix adjust. Identities = 163/486 (33%), Positives = 249/486 (51%), Gaps = 50/486 (10%) Query: 6 AMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASL 65 + V + W R DLR+ DN ALY A + I +FI Q I +++ SL Sbjct: 2 SKKVAIHWFRQDLRLADNPALYHASQADE--TITIFILDENQ----DIGGASKLWLHHSL 55 Query: 66 LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125 + +SL+ K + + +E + + +VT ++NR Y+ + RD +++ Sbjct: 56 NNLNRSLNDKLNFYN-------GNPLEIIKKLIKENKVTDFYWNRCYDKYSINRDTQIKQ 108 Query: 126 RLQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQ------NLVQADLRSLP 178 LQ + I SF+ S+L+ P YKVYTPF K LI+ N+ +A L Sbjct: 109 FLQEQSINVNSFNGSLLIEPWQCKKDDGTHYKVYTPFYKELIKIRKYQPNIKKAVFSRL- 167 Query: 179 VPAIRLTGPVTPSNI----PRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQR 234 I+L T ++ P+ +Q I + +GE+ A +L +F K+ Y R Sbjct: 168 ---IKLASSDTLDSLKLLEPKL---TWQNIIKQWQVGEKAAAQLLEQFLTTKIKDYKIAR 221 Query: 235 DIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHL 294 D + TS LSPYL G +SP Q +N ++ L + ++ EL+WR+F + Sbjct: 222 DYMSTDATSTLSPYLHFGEISPNQIFNAVQS-----LDSIGNNEEHFIKELVWRDFSYYQ 276 Query: 295 MAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLR 354 + +YP + K + W+ ++ LL+ W++G TG PI+DA MRQL G+MHNR+R Sbjct: 277 IYYYPEL-HNKNINQKFDNFAWDNNATLLKKWQKGQTGIPIVDAGMRQLWQTGYMHNRVR 335 Query: 355 MITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQ 414 MI ASFL+K+ L+ W+ GE++F L D D ASNN WQW A G D+ PYFRIFNP +Q Sbjct: 336 MIVASFLIKNCLIHWKYGEKWFFDTLFDADFASNNANWQWVAGCGLDAAPYFRIFNPVLQ 395 Query: 415 GKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSL---------NYPLPIVDHKK 465 ++F+ +IR ++PEL +P + I P W + ++L L NYP PIVD K Sbjct: 396 AEKFEAY-EYIRKYVPELKLLPNKLIAKP--W-EASELVLQEAGIILGQNYPRPIVDLKN 451 Query: 466 ACHHTL 471 + L Sbjct: 452 SRDKAL 457 >gi|241761599|ref|ZP_04759686.1| Deoxyribodipyrimidine photo-lyase [Zymomonas mobilis subsp. mobilis ATCC 10988] gi|241373907|gb|EER63440.1| Deoxyribodipyrimidine photo-lyase [Zymomonas mobilis subsp. mobilis ATCC 10988] Length = 467 Score = 246 bits (627), Expect = 9e-63, Method: Compositional matrix adjust. Identities = 162/481 (33%), Positives = 249/481 (51%), Gaps = 42/481 (8%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 L+W R+D R+ DN A+ AA + + VI +I + + ++ SLL + + Sbjct: 8 LIWFRHDFRLRDNAAVTAAIQSRNP-VICFYIQESADAKTESAA---DWWVAESLLALNR 63 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQ-RVTKLFYNRQYEINEVRRDKLLEKRLQH 129 L +KG Q F+ E + +QQ KLF+NR+Y+ D++L+K ++ Sbjct: 64 QLKEKG-----GQLHLFEGDAEKIIPEIVQQSHACKLFWNRRYDFKGKETDQILKKSIRA 118 Query: 130 RVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNL-VQADLRSLPVPAIRLTGP 187 + +SF +++L P ++ N Q +++++ + +A+ + + +QA LP P + Sbjct: 119 MGLEVQSFPNNLLNEPWTVKNDKGQPFRIFSAYWRAVQRYMNIQA---VLPCPENWV--- 172 Query: 188 VTPSNIPRFFDYPFQAI------DPMFPI--------GEQNALHILRKFCKEKVYYYVEQ 233 + I Y AI D + I GE A L+ F + + +Y ++ Sbjct: 173 FSTREIRHCLGYKDIAILAKETQDSSWKIKLKQSHRFGENEAHKQLKSFIENDLAHYAKE 232 Query: 234 RDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRH 293 RD PA GTS LS +L G +S +Q W+ + + G +L EL WREF Sbjct: 233 RDFPAKDGTSLLSAFLRSGQISSKQIWHEVTKN------GSGEGTSKFLAELGWREFAWS 286 Query: 294 LMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRL 353 ++ +P + P +K+ W K S LQ WK+G TG+P IDA MR L G+M NRL Sbjct: 287 VLWEHPDLNQHN-LRPEFDKMPWKKASDNLQRWKEGQTGYPFIDAGMRALWQTGFMPNRL 345 Query: 354 RMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTI 413 RM+TASFLVK LL+DWR GE++F L+D D A N WQW A +G +S PYFRI NP + Sbjct: 346 RMVTASFLVKHLLIDWREGEKWFAQTLVDYDPACNATNWQWVAGSGIESAPYFRIMNPIL 405 Query: 414 QGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQ 473 Q ++FDP G +IR W+ EL +V T +IH P + NYPLPI+ H++ L Sbjct: 406 QSQKFDPDGQYIREWVKELADVSTAFIHTP---WKADKQPANYPLPIIAHEEGRDRALRA 462 Query: 474 Y 474 + Sbjct: 463 W 463 >gi|170733532|ref|YP_001765479.1| deoxyribodipyrimidine photo-lyase [Burkholderia cenocepacia MC0-3] gi|169816774|gb|ACA91357.1| Deoxyribodipyrimidine photo-lyase [Burkholderia cenocepacia MC0-3] Length = 519 Score = 245 bits (626), Expect = 9e-63, Method: Compositional matrix adjust. Identities = 155/485 (31%), Positives = 243/485 (50%), Gaps = 33/485 (6%) Query: 1 MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHF 60 + A +++ +VW R+DLR+TD AL A S ++ VF+ + + Sbjct: 28 VSAKPSVAPAIVWFRDDLRVTDQPALTRAVE-SGRPLVCVFVDDTGAGAGPALGGAARWW 86 Query: 61 IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120 ++ SL + +L++ G + D+ ++ +++NR+Y + D Sbjct: 87 LHGSLAGLDAALARHGGRLLLLRG----DAQREIERVVGDTGAAAVYWNRRYAQQQRDAD 142 Query: 121 KLLEKRLQHR-VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPV 179 L+ L+ R V +S + S+L P +L + Y+V+T + +A ++ A LP Sbjct: 143 AALKASLKARGVTVESSNGSLLNEPWEVLTGSGGPYQVFTAYWRAARRDRTVA--APLPA 200 Query: 180 PAIRLTGPVTPSNI-------------PRFFDYPFQAIDPMFPIGEQNALHILRKFCKEK 226 P R+ P + P D+ D E AL L +F Sbjct: 201 PE-RIAFHPWPKAVRDRALALDALALRPHAPDWAGGLRDAWPAPDEAGALARLDRFLTTS 259 Query: 227 VYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELI 286 + Y + RD P TS+LSP+L G +SPRQ W+ ++ + A +L+EL Sbjct: 260 LAGYADARDRPDRPATSRLSPFLRFGNVSPRQVWHAVQGAANAGGAAYAAHADKFLSELG 319 Query: 287 WREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTI 346 WREF L+ +P++ F + + W D L+AW++G TG+P++DA +R+L T Sbjct: 320 WREFSYTLLYHFPALATDN-FRAQFDAMPWRDDPAALRAWQRGRTGYPLVDAGLRELWTT 378 Query: 347 GWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYF 406 GWMHNR+RM+ ASFL+K LL+DWR GE +F L+D D A+N WQW A G D+ PYF Sbjct: 379 GWMHNRVRMVVASFLIKHLLIDWRAGEAWFRDTLVDADPANNAASWQWVAGCGADAAPYF 438 Query: 407 RIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSW------LDKND--LSLNYPL 458 RIFNP QG++FDP G ++R W+PEL + IHAP W L+ L ++YP Sbjct: 439 RIFNPVAQGQKFDPGGAYVRRWVPELAGLDDASIHAP--WEASPLALEAAGVRLGVDYPA 496 Query: 459 PIVDH 463 P+V+H Sbjct: 497 PLVEH 501 >gi|316933592|ref|YP_004108574.1| DNA photolyase FAD-binding protein [Rhodopseudomonas palustris DX-1] gi|315601306|gb|ADU43841.1| DNA photolyase FAD-binding protein [Rhodopseudomonas palustris DX-1] Length = 483 Score = 245 bits (626), Expect = 9e-63, Method: Compositional matrix adjust. Identities = 166/493 (33%), Positives = 236/493 (47%), Gaps = 35/493 (7%) Query: 1 MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFI--ATPEQWRQHGISARQS 58 M T +VW R+DLR+ D+ AL+AA S A V+ V++ ++ R G +AR Sbjct: 1 MLTTAGSRPVIVWFRDDLRLADHPALHAAAQ-SGAPVLCVYVLDEVSDEVRALGGAARW- 58 Query: 59 HFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVR 118 ++ SL ++ L G + + + L Q + +N + EI R Sbjct: 59 -WLAQSLRSLEAELRAAGALLILRRGP----AAAVLAELAQQSDAAAVHWN-EIEIAPHR 112 Query: 119 RDKLLEKR--LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRS 176 + L+ P +I + + +V+TPF + ++ + + Sbjct: 113 AVADALADALTMAGIAYHRHSGDTLVAPSAIRSKDGRGMRVFTPFWRRVLS--LGDPPQP 170 Query: 177 LPVPAIRLTGPVTPSNIPRFFDYPFQAIDP--------MFPIGEQNALHILRKFCKEKVY 228 LP PA P P + D+ + P + GE A L F ++ Sbjct: 171 LPRPAALRPAPALPGA--QLSDWQLEPTAPDWAGGLRATWRPGEAAAKTRLADFLA-RLP 227 Query: 229 YYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDL-LIKPKSGAFSWLNELIW 287 Y E RD P TS LSPYL G +SPRQ W + + I P F L+EL W Sbjct: 228 GYAEGRDYPDRHVTSGLSPYLRFGEISPRQVWYAARFAAAERPAIAPDIDKF--LSELGW 285 Query: 288 REFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIG 347 REF RHL+A +P + + P + W D L AW++G TG+PI+DA M +L G Sbjct: 286 REFCRHLLADHPDLA-ARNLQPAFDAFPWQSDDGALTAWQRGRTGYPIVDAGMHELWHSG 344 Query: 348 WMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFR 407 MHNR+RM+ SFLVK LL+DWR+GE++F L+D D SN G WQW A G D+ PYFR Sbjct: 345 VMHNRVRMVVGSFLVKHLLIDWRLGEQWFWDTLVDADPGSNPGNWQWVAGCGADAAPYFR 404 Query: 408 IFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKN------DLSLNYPLPIV 461 +FNP +Q ++FD G +IR WLPEL +P IH P + +L NYP PIV Sbjct: 405 VFNPVLQSEKFDADGAYIRRWLPELAGLPNNLIHQPWTATPLELAAAGVELGGNYPRPIV 464 Query: 462 DHKKACHHTLNQY 474 DHK A L+ Y Sbjct: 465 DHKAARQRALSAY 477 >gi|126439700|ref|YP_001059701.1| deoxyribodipyrimidine photolyase [Burkholderia pseudomallei 668] gi|126219193|gb|ABN82699.1| deoxyribodipyrimidine photolyase [Burkholderia pseudomallei 668] Length = 486 Score = 245 bits (626), Expect = 1e-62, Method: Compositional matrix adjust. Identities = 164/504 (32%), Positives = 253/504 (50%), Gaps = 44/504 (8%) Query: 1 MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQW-RQHGISARQSH 59 M ++ +++ +VW R+DLR++D+ AL A S VI V++ R G +AR Sbjct: 1 MSSSISIAPAVVWFRDDLRVSDHPALMRAA-ESGRPVIGVYVFDERAGGRPLGGAARW-- 57 Query: 60 FIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRR 119 +++ SL + +L+ G + D + S+ ++++R+Y + Sbjct: 58 WLHGSLRALGAALAALGGTLALLRGDEHDTIV----SFAAALGAGAVYWSRRYALAARAV 113 Query: 120 DKLLEKRLQHRVIC-KSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLP 178 D ++ L + I ++F+ S+L PG ++N + Y+V++ + +A ++ R +P Sbjct: 114 DNAVQTALDAQGIAVETFNASLLFEPGDLVNADGRPYQVFSAYWRAAMR-------RGVP 166 Query: 179 VPAI----RLTGPVTPSNIPR-FFDYPFQAIDPMFP-----------IGEQNALHILRKF 222 P + RL G P+ + R ++P P GE A LR F Sbjct: 167 APPLGAPRRLNGGALPAALARQCVALDALGLEPTGPDWAGGLRDAWRFGEDAAHRRLRAF 226 Query: 223 CKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWL 282 ++ Y +RD P I TS+LSPY+ G LS RQ W+ + + ++ +L Sbjct: 227 VDSRLGGYAAERDRPGIASTSRLSPYVRFGNLSARQLWHAAADAYAHGAAT-QADLDKFL 285 Query: 283 NELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQ 342 +EL WREF L+ +P + + + + W D L AW++G TG+P +DA MR+ Sbjct: 286 SELGWREFGWTLLHHFPDLPR-RNLRHTLDGMPWRDDPAALAAWRRGATGYPFVDAGMRE 344 Query: 343 LNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDS 402 L GWMHNR+RM+ ASFLVK LL+DWR GE +F L+D D ASN WQW A G D+ Sbjct: 345 LWATGWMHNRVRMVCASFLVKHLLIDWRAGEAWFWDTLVDADAASNAANWQWVAGCGADA 404 Query: 403 VPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND--------LSL 454 PYFRIFNP QG++FDP G ++R W+PEL +P IH P W L Sbjct: 405 APYFRIFNPVAQGRKFDPDGAYVRRWVPELAGLPPATIHEP--WAAPGAQLAAAGVRLGE 462 Query: 455 NYPLPIVDHKKACHHTLNQYYAAK 478 YPLPIV H A L+ + A + Sbjct: 463 TYPLPIVAHDAARRRALDAFGAIR 486 >gi|312889452|ref|ZP_07749004.1| Deoxyribodipyrimidine photo-lyase [Mucilaginibacter paludis DSM 18603] gi|311298004|gb|EFQ75121.1| Deoxyribodipyrimidine photo-lyase [Mucilaginibacter paludis DSM 18603] Length = 437 Score = 245 bits (626), Expect = 1e-62, Method: Compositional matrix adjust. Identities = 158/484 (32%), Positives = 240/484 (49%), Gaps = 60/484 (12%) Query: 8 SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSH---FIYAS 64 +V + W R DLR+ DN LY A V+ +FI E Q + R+ FIY + Sbjct: 4 TVSIFWFRRDLRLDDNAGLYYALKGGHP-VLPLFIFDTEILNQ--LEDREDARVTFIYQT 60 Query: 65 LLQVQKSLSQK---GIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD- 120 + + L ++ I+ +Y+ + + + + ++ N YE RD Sbjct: 61 IEALNNELREQQSSSILIKYNSTGQAWNEV------LAEYDIAAVYTNHDYEPYARHRDA 114 Query: 121 KLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVP 180 +L E Q + ++ D V+ G ++ + Y V+TP+++ L L+ P P Sbjct: 115 ELKELFTQKNIEFYTYKDQVIFEKGEVVKDDQKPYTVFTPYKRKWYDKLKPFYLK--PYP 172 Query: 181 AIRLTGPVTPSNIPRFFDYPFQAIDPMFPIG-EQNALHILRKFCKEKVYYYVEQRDIPAI 239 + ++ ++ PFQ + + +G ++ H K K + Y EQRD PAI Sbjct: 173 TRKYLDNISKTS-------PFQ-LPTLKSMGFAESKTHFPDKQYKTIIAGYHEQRDFPAI 224 Query: 240 QGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAF--SWLNELIWREFYRHLMAF 297 +GTS + +L G +S RQ L GA +WLNELIWREFY ++ Sbjct: 225 KGTSHIGLHLRFGTVSIRQ------------LATDAYGAEEKTWLNELIWREFYMMILYH 272 Query: 298 YPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMIT 357 +P F P ++I W + +AW +G TG+P++DA MR+LN G+MHNR+RM+ Sbjct: 273 FPQTA-DHAFKPEYDRIRWRNNETEFKAWCEGKTGYPLVDAGMRELNATGYMHNRVRMVV 331 Query: 358 ASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKR 417 ASFL K LL+DWR GE YF +LLD ++ASN GGWQWAA +G D+ PYFR+FNP +Q K+ Sbjct: 332 ASFLSKHLLIDWRWGERYFARKLLDYEMASNVGGWQWAAGSGTDAAPYFRVFNPELQLKK 391 Query: 418 FDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477 FDP+ +++ W+PE + YP PIVDH A L + A Sbjct: 392 FDPKLQYVKKWVPEYADFS------------------KYPEPIVDHAFARERCLKVFKEA 433 Query: 478 KKQS 481 +S Sbjct: 434 LSKS 437 >gi|157412647|ref|YP_001483513.1| putative DNA photolyase [Prochlorococcus marinus str. MIT 9215] gi|157387222|gb|ABV49927.1| putative DNA photolyase [Prochlorococcus marinus str. MIT 9215] Length = 478 Score = 245 bits (625), Expect = 1e-62, Method: Compositional matrix adjust. Identities = 170/478 (35%), Positives = 248/478 (51%), Gaps = 45/478 (9%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 L W R DLRI DN+AL A S+A + + +I E + + ++ F+ SL ++ Sbjct: 7 LFWYRKDLRIFDNQALNKAISLSNA-ITSTYIFD-ENYSHDFNANSRAWFLANSLQELGN 64 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKL------FYNRQYEINEVRRDKLLE 124 + ++ G IE D + ++ KL F+N+ E E+ RD ++ Sbjct: 65 NWNKMGSRL----------VIEKGDPILIIPQLAKLIDAKFVFWNKSIEPYEINRDLKIK 114 Query: 125 KRLQHRVI--CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNL------------- 169 K L+ + I +S+D +L+ P I + + Y VY PF K L + Sbjct: 115 KNLKEKNIQFIESWD-HLLVEPSKIFSGNNKPYSVYGPFYKNLKSKMKFLGSYNQYKVIF 173 Query: 170 -VQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEK-V 227 + L I + + + +P I P P GE A +L+ F EK + Sbjct: 174 QFKDIDNKLKENKIINSSDSVLNKFLKNIKFPGSNICPCRP-GEVAAESLLKNFINEKKI 232 Query: 228 YYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAF-SWLNELI 286 Y Y RD+P+ GTS LS L G +S R+ WN D S + +W EL+ Sbjct: 233 YSYNSVRDLPSHIGTSFLSASLRFGTISIRKVWNATLNLNSDFESHENSLSIETWQKELV 292 Query: 287 WREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTI 346 WREFY+H + +P + G P+ ++ W ++ Q W +G TG PI+DAAMRQLN+ Sbjct: 293 WREFYQHCLFHFPELEKG-PYRKKWDQFPWLNNNEWFQHWSKGETGVPIVDAAMRQLNST 351 Query: 347 GWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYF 406 GWMHNR RMI ASFLVKDL+ +W++GE+ FM L+DGDLA+NNGGWQW+AS+G D P Sbjct: 352 GWMHNRCRMIVASFLVKDLICNWQMGEKKFMETLVDGDLAANNGGWQWSASSGMDPKP-L 410 Query: 407 RIFNPTIQGKRFDPQGTFIRHWLPELNNVP-TQYIHAPHSWLDKNDLSLNYPLPIVDH 463 RIFNP Q K+FDP +I+ W+PEL+ V + ++ S L+ N NY PIV+H Sbjct: 411 RIFNPYTQAKKFDPICEYIKSWIPELSKVSNSDILNGEISNLENN----NYSKPIVNH 464 >gi|296536181|ref|ZP_06898305.1| deoxyribodipyrimidine photo-lyase [Roseomonas cervicalis ATCC 49957] gi|296263491|gb|EFH09992.1| deoxyribodipyrimidine photo-lyase [Roseomonas cervicalis ATCC 49957] Length = 477 Score = 245 bits (625), Expect = 1e-62, Method: Compositional matrix adjust. Identities = 162/476 (34%), Positives = 232/476 (48%), Gaps = 42/476 (8%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 L+WLR DLR D+ AL+A V+ VF+ G +AR +++ SL K Sbjct: 9 LLWLRQDLRTADHPALHAVAGQP---VLPVFVLDESDPWAPGGAARW--WLHHSL----K 59 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL--Q 128 +L +K + + + ++ +R YE +RD + K L Q Sbjct: 60 ALGEKLAALGAPLLLLRGKAADLIPELADALGAAEVHASRLYEPWARQRDAGIAKALEGQ 119 Query: 129 HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188 R +C + LL P + + Y VYTPF +A+ L D RL Sbjct: 120 GRRLCL-HSGATLLEPHRLRTGQGKPYSVYTPFARAV---LALGDPPPPIPAPDRLRAAP 175 Query: 189 TPSN---------IPRFFDYPFQAIDPMF-PIGEQNALHILRKFCKEKVYYYVEQRDIPA 238 P +PR + + A P + GE A LR F + Y RD+P Sbjct: 176 PPREGLALDALDLLPRPPEPDWAAAFPEYWTPGEDGAAARLRDFAAQAAQGYDRGRDLPG 235 Query: 239 IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFY 298 T++LSP+L G +SPRQ W + E G +WL E++WREF H + Sbjct: 236 EDRTARLSPHLHWGEVSPRQAWQAVAEGGK------SGGHITWLKEILWREFAYHTLWHR 289 Query: 299 PSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITA 358 P + P P + W D LLQAW++G TG+PI+DA +RQL GWMHNR+RM+ Sbjct: 290 PELP-DTPLRPEFAEFPWQPDDTLLQAWQRGRTGYPIVDAGLRQLWRHGWMHNRVRMVVG 348 Query: 359 SFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRF 418 S LVK LL W+ G +F L+D DLA+N+ WQW A +G D+ PYFRIFNP +QG++F Sbjct: 349 SLLVKHLLQPWQQGSLWFWDTLVDADLAANSMNWQWVAGSGIDASPYFRIFNPILQGEKF 408 Query: 419 DPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND--------LSLNYPLPIVDHKKA 466 DP+G ++RH++PEL +P ++H P W + L +YP PIVDH+ Sbjct: 409 DPEGRYVRHFVPELARLPDAWLHKP--WQASPEMLRAAGLRLGHDYPAPIVDHEGG 462 >gi|296271918|ref|YP_003654549.1| deoxyribodipyrimidine photo-lyase [Arcobacter nitrofigilis DSM 7299] gi|296096093|gb|ADG92043.1| Deoxyribodipyrimidine photo-lyase [Arcobacter nitrofigilis DSM 7299] Length = 443 Score = 245 bits (625), Expect = 1e-62, Method: Compositional matrix adjust. Identities = 170/487 (34%), Positives = 244/487 (50%), Gaps = 68/487 (13%) Query: 10 HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69 ++W R DLRI DNK L A + +V+ +FI + ++ FIY ++L ++ Sbjct: 3 QILWFRRDLRIIDNKILEKASN----EVLPIFIFDKNILEKLDFDDKRVTFIYDAVLALK 58 Query: 70 KSLSQKGI-----------VFQYHQCSNFDDSIEW--LDSYCLQQRVTKLFYNRQYEINE 116 KSL + G+ VF + FD+ + DSY ++ R +INE Sbjct: 59 KSLQELGLDLYIFFDTPKNVFTKLKNEGFDEVLCSCDFDSYSIK---------RDKQINE 109 Query: 117 VRRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADL-- 174 + + K + DS L+ P L YKV+TPF K+L L +D Sbjct: 110 I-------------LPLKRYLDSFLINPNKNLKKDGTPYKVFTPFYKSLSW-LTSSDKIG 155 Query: 175 RSLPVPAIRLTGPVTPSNIPRFFDYPFQAID-PMF-PIGEQNALHILRKFCKEKVYYYVE 232 ++ P ++L+ + P + F+ + P F QN L KEKV Y + Sbjct: 156 EAMINPNLKLSK--YENKTPTLDELGFERVTLPEFLKKSPQNRLDDF----KEKVKEYEK 209 Query: 233 QRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYR 292 RDI GTS L L G LSPR +N +K+ K + +++ +L WREFY Sbjct: 210 NRDIFYKDGTSNLGVDLRFGTLSPRMIFNEIKKS-------DKENSEAFIRQLFWREFYN 262 Query: 293 HLMAFYPSVCMGKPFIPWTE-KIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHN 351 +++ +P+ W +I W++D Q W +G TG PIIDAAMR N G MHN Sbjct: 263 YILFHFPNSENEN----WNGIEISWSEDEEDFQKWCEGKTGVPIIDAAMRHFNKTGMMHN 318 Query: 352 RLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNP 411 RLRMI +SFL K+LL+DW+ GE+YF +LLD + +SN G WQWAASTG DSVPYFRIFNP Sbjct: 319 RLRMIVSSFLCKNLLIDWKKGEQYFAKKLLDYEASSNIGSWQWAASTGADSVPYFRIFNP 378 Query: 412 TIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTL 471 +Q +FD + FI+ +PEL +V + IH + DK Y IVD K + + Sbjct: 379 YLQSAKFDKEAIFIKSVMPELKDVDAKLIHIEGALKDK------YVNSIVDIKYSRDRAM 432 Query: 472 NQYYAAK 478 + AK Sbjct: 433 RIFKEAK 439 >gi|217421243|ref|ZP_03452748.1| deoxyribodipyrimidine photolyase [Burkholderia pseudomallei 576] gi|217396655|gb|EEC36672.1| deoxyribodipyrimidine photolyase [Burkholderia pseudomallei 576] Length = 486 Score = 245 bits (625), Expect = 1e-62, Method: Compositional matrix adjust. Identities = 161/503 (32%), Positives = 250/503 (49%), Gaps = 42/503 (8%) Query: 1 MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHF 60 M ++ +++ +VW R+DLR++D+ AL A S VI V++ E+ + + Sbjct: 1 MSSSISIAPAVVWFRDDLRVSDHPALMRAA-ESGRPVIGVYVFD-ERAGGRPLGGAARWW 58 Query: 61 IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120 ++ SL + +L+ G + D + S+ ++++R+Y + D Sbjct: 59 LHGSLRALGAALAALGGTLALLRGDEHDTIV----SFAAALGAGAVYWSRRYALAARAVD 114 Query: 121 KLLEKRLQHRVIC-KSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPV 179 ++ L R I ++F+ S+L PG ++N + Y+V++ + +A ++ R +P Sbjct: 115 NAVQTALDARGIAVETFNASLLFEPGDLVNADGRPYQVFSAYWRAAMR-------RGVPA 167 Query: 180 PAI----RLTGPVTPSNIPR-FFDYPFQAIDPMFP-----------IGEQNALHILRKFC 223 P + RL G P+ + R ++P P GE A LR F Sbjct: 168 PPLGAPRRLNGGALPAALARQCVALDALGLEPTGPDWAGGLRDAWRFGEDAAHRRLRAFV 227 Query: 224 KEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLN 283 ++ Y +RD P I TS+LSPY+ G LS RQ W+ + + ++ +L+ Sbjct: 228 DSRLGGYAAERDRPGIASTSRLSPYVRFGNLSARQLWHAAADAYAHGAAT-QADLDKFLS 286 Query: 284 ELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQL 343 EL WREF + +P + + + + W D L AW++G TG+P +DA MR+L Sbjct: 287 ELGWREFGWTQLHHFPDLPR-RNLRHTLDGMPWRDDPAALAAWRRGATGYPFVDAGMREL 345 Query: 344 NTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSV 403 GWMHNR+RM+ ASFLVK LL+DWR GE +F L+D D ASN WQW A G D+ Sbjct: 346 WATGWMHNRVRMVCASFLVKHLLIDWRAGEAWFWDTLVDADAASNAANWQWVAGCGADAA 405 Query: 404 PYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND--------LSLN 455 PYFRIFNP QG++FDP G ++R W+PEL +P IH P W L Sbjct: 406 PYFRIFNPVAQGRKFDPDGAYVRRWVPELAGLPPATIHEP--WAAPGAQLAAAGVRLGET 463 Query: 456 YPLPIVDHKKACHHTLNQYYAAK 478 YPLPIV H A L+ + A + Sbjct: 464 YPLPIVAHDAARRRALDAFGAIR 486 >gi|319949517|ref|ZP_08023567.1| Deoxyribodipyrimidine photo-lyase [Dietzia cinnamea P4] gi|319436807|gb|EFV91877.1| Deoxyribodipyrimidine photo-lyase [Dietzia cinnamea P4] Length = 466 Score = 244 bits (624), Expect = 2e-62, Method: Compositional matrix adjust. Identities = 169/512 (33%), Positives = 241/512 (47%), Gaps = 84/512 (16%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M + ++W R DLR++D+ AL AA D +V+ VF+ P + G A + + AS+ Sbjct: 1 MGISILWFRRDLRLSDHPALLAAVEAGD-EVLPVFVRDPALLSRAGARADR---MAASIA 56 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 + + +V D + ++ +R+ RRD + Sbjct: 57 ALSGDIGGALVV-------RTGDPARVIPGLAALTGAREVHVSRESTPYGRRRDGRVRAA 109 Query: 127 LQ--HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL 184 L+ R + ++ + PG +LN + + Y+V+TPF +A R Sbjct: 110 LEADGRRLVET-GSPYAVGPGRVLNGSGRPYQVFTPFSRAW-----------------RE 151 Query: 185 TGPVTPSNIPRFFDYPFQAIDPMFPIGE---------------------------QNALH 217 G P PR D P+ A+ P GE AL Sbjct: 152 HGWPEPGRRPR--DDPWAAM----PAGELPGDDGDGWGRDTAGGAVRGAAGDAGEAAALA 205 Query: 218 ILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKS- 276 R F ++ + +Y +QRD P + TS+LS L G + PR DL P + Sbjct: 206 RWRAFLEDDLEHYGQQRDRPDLDTTSRLSAPLKYGEIHPRTI-------LADLAAHPAAD 258 Query: 277 --GAFSWLNELIWREFYRHLMAFYPSVCM-----GKPFIPWTEKIEWNKDSHLLQAWKQG 329 GA ++ EL WREFY ++ P +P+ E N L++AW++G Sbjct: 259 GEGARRFVTELAWREFYADVLWHQPRSAWRDLRDALSGMPYDRGPEVND---LVEAWRRG 315 Query: 330 YTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNN 389 TGFP +DA MRQL GWMHNR+RM+TASFLVKDL V W +G +F+ LLDGDLASNN Sbjct: 316 RTGFPFVDAGMRQLVAQGWMHNRVRMVTASFLVKDLHVWWPVGARHFLDHLLDGDLASNN 375 Query: 390 GGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDK 449 GWQW A TG D+ P+FR+FNP QG+RFDP G +IR W+PEL ++P H P W D Sbjct: 376 HGWQWVAGTGTDASPFFRVFNPVTQGQRFDPDGDYIRRWVPELRHLPGAAAHEPWLWPDG 435 Query: 450 NDLSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481 +D YP IVDH + L +Y + S Sbjct: 436 HD--HGYPERIVDHAEERLEALRRYDVVRNGS 465 >gi|78066957|ref|YP_369726.1| deoxyribodipyrimidine photo-lyase type I [Burkholderia sp. 383] gi|77967702|gb|ABB09082.1| deoxyribodipyrimidine photo-lyase type I [Burkholderia sp. 383] Length = 518 Score = 244 bits (624), Expect = 2e-62, Method: Compositional matrix adjust. Identities = 156/485 (32%), Positives = 243/485 (50%), Gaps = 33/485 (6%) Query: 1 MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHF 60 + A ++++ +VW R+DLR+TD AL A S ++ VF+ + + Sbjct: 27 VPAKSSVAPAIVWFRDDLRVTDQPALTRAV-ESGRPLVCVFVDDTGDGAGRALGGAARWW 85 Query: 61 IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120 ++ SL + +L++ G + D+ ++ +++NR+Y + D Sbjct: 86 LHGSLAGLDAALARHGGRLLLLRG----DAQREIERVVHDTGAEAVYWNRRYAQPQRDAD 141 Query: 121 KLLEKRLQHR-VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPV 179 L+ L+ R V +S + S+L P +L + Y+V+T + +A ++ A LP Sbjct: 142 AALKASLKARGVTVESSNGSLLNEPWEVLTGSGGPYQVFTAYWRAARRDRTVA--VPLPE 199 Query: 180 PAIRLTGPVTPSNI-------------PRFFDYPFQAIDPMFPIGEQNALHILRKFCKEK 226 P R+ P + P D+ D E A L F Sbjct: 200 PE-RIAFHPWPKAVRDCALALDVLALRPPVPDWAGGLRDAWPAPDEAGAHARLDAFLTAS 258 Query: 227 VYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELI 286 + Y + RD+P TS+LSP+L G LSPRQ W+ ++ + A +L+EL Sbjct: 259 LAGYADARDLPDRPATSRLSPFLRFGNLSPRQVWHAVQGAANAGGAAVAADADKFLSELG 318 Query: 287 WREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTI 346 WREF L+ +P++ F + + W D L+AW++G TG+P++DA +R+L T Sbjct: 319 WREFSYTLLYHFPALASDN-FRAQFDAMPWRDDPAALRAWQRGRTGYPLVDAGLRELWTT 377 Query: 347 GWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYF 406 GWMHNR+RM+ ASFL+K LL+DWR GE +F L+D D A+N WQW A G D+ PYF Sbjct: 378 GWMHNRVRMVVASFLIKHLLIDWRAGEAWFWDTLVDADPANNAASWQWVAGCGADAAPYF 437 Query: 407 RIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSW------LDKND--LSLNYPL 458 RIFNP QG++FDP G ++R W+PEL + IHAP W LD L ++YP Sbjct: 438 RIFNPVAQGQKFDPDGAYVRRWVPELAGLDNASIHAP--WEASPLELDAAGVRLGVDYPA 495 Query: 459 PIVDH 463 P+V+H Sbjct: 496 PLVEH 500 >gi|330927872|ref|XP_003302036.1| hypothetical protein PTT_13712 [Pyrenophora teres f. teres 0-1] gi|311322808|gb|EFQ89849.1| hypothetical protein PTT_13712 [Pyrenophora teres f. teres 0-1] Length = 534 Score = 244 bits (624), Expect = 2e-62, Method: Compositional matrix adjust. Identities = 153/490 (31%), Positives = 241/490 (49%), Gaps = 52/490 (10%) Query: 17 DLRITDNKALYAA---CHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQKSLS 73 DLRI DN AL+ A ++ ++ +++ P HG S + F+ L +QK L Sbjct: 56 DLRIQDNTALHHASELAQSARKPLVCIYVDCPADESWHGTSPARVDFMCEGLKIMQKELK 115 Query: 74 QKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHRVIC 133 I + QC N +E + +Q+V+ +F N +YEI+E+RRD L K + ++ Sbjct: 116 DLNIPLVFLQCENRKKIVETAVEWLKKQQVSHVFGNYEYEIDEMRRDFKLVKTVGDKIQV 175 Query: 134 KSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP---VTP 190 + D ++ PG++L KV+TP+ KA + A LRS P + T P P Sbjct: 176 SLYHDQTVVEPGTMLTGTGTPMKVFTPYHKAWL-----AKLRS--EPELLDTNPPPAANP 228 Query: 191 SNIPRFFDYPFQAIDP-------------------MFPIGEQNALHILRKFCKEKVYYYV 231 S++ + F + P ++P G A + F K+ + +Y Sbjct: 229 SSMKKDLKDLFDTLAPKPASDKQFTSEEEKKRIRKLWPAGHSAASARMDTFLKQ-ISHYA 287 Query: 232 EQRDIPAIQGTSQLSPYLSIGVLSPRQC------WNRLKEEFVDLLIKPKSGAFSWLNEL 285 R PA TS++S Y S G++S R +NR +F + K +G + W+ E+ Sbjct: 288 ATRSNPAANSTSRMSAYFSAGMISMRSTLQKVVDYNRGSTDFTE--AKASTGVYGWVREI 345 Query: 286 IWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNT 345 ++RE YR P M P + ++W D + W +G TG P IDA MRQLN Sbjct: 346 VFRELYRQTTMTTPHTSMNLPQNLKFDAVQWEDDEEGWEKWYKGQTGEPFIDAGMRQLNA 405 Query: 346 IGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPY 405 +MHNRLRM +S+L +LL+D+R GE YF L+D DL++N GW+ P Sbjct: 406 EAYMHNRLRMNVSSYLYCNLLLDYRRGERYFAETLIDWDLSNNTQGWE----------PS 455 Query: 406 FRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLS-LNYPLPIVDHK 464 + +FNP Q ++ DP G +IR W+PEL +V + + AP++ L K + L YP P VD K Sbjct: 456 YTVFNPVSQAEKNDPDGEYIRKWVPELRHVEGKAVFAPYARLSKKEFEKLGYPKPHVDWK 515 Query: 465 KACHHTLNQY 474 + ++++ Sbjct: 516 ETKARAIDRF 525 >gi|257388583|ref|YP_003178356.1| deoxyribodipyrimidine photo-lyase [Halomicrobium mukohataei DSM 12286] gi|257170890|gb|ACV48649.1| Deoxyribodipyrimidine photo-lyase [Halomicrobium mukohataei DSM 12286] Length = 466 Score = 244 bits (624), Expect = 2e-62, Method: Compositional matrix adjust. Identities = 164/494 (33%), Positives = 248/494 (50%), Gaps = 47/494 (9%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M +H W R DLR TDN L AA +D+ V+ VF+ + H R + F+ +L Sbjct: 1 MRIH--WHRRDLRTTDNAGLAAAT--ADSPVVPVFVFD-DAVLDHAAPPRVA-FMLDALD 54 Query: 67 QVQKSLSQKG--IVFQYHQCSN---------FDDSIEWLDSYCLQQRVTKLFYNRQYEIN 115 ++ +G +V + + D + W ++Y + L R + Sbjct: 55 SLRAQYRDRGSDLVIAHGDPTAEIPRLAEAFGADGVTWGEAY------SGLGIERDIAVR 108 Query: 116 EVRRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLR 175 + D +E+ ++ DSV PG I + Y V+T F + + + D Sbjct: 109 QALDDVGVER--------EAVTDSVHHRPGEITTNDGDPYSVFTYFGRKW-HDREKEDPY 159 Query: 176 SLPVPA--IRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQ 233 P P ++G PS F+ P QA P P G + A +L FC++ +Y Y ++ Sbjct: 160 DAPGPDELADVSGDPLPSVGDLGFEEP-QAEIP--PAGTEPARELLDAFCEDDIYRYEDR 216 Query: 234 RDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFS-WLNELIWREFYR 292 RD PA TS+LS +L G + R+ + R + + + + + ++L WREFY Sbjct: 217 RDYPADDCTSRLSAHLKFGTIGIREVYERTASAAAAADDEERRESVAEFQSQLAWREFYT 276 Query: 293 HLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNR 352 ++ SV + + ++W D LQAWK G TG+PI+DA MRQL ++HNR Sbjct: 277 QVLFANRSVVTDN-YKTYERPLQWRDDPEALQAWKDGETGYPIVDAGMRQLRQEAFVHNR 335 Query: 353 LRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPT 412 +RMI ASFL KDLL+DWR G E+F +L+D D A++NGGWQWAASTG D+ PYFRIFNP Sbjct: 336 VRMIVASFLTKDLLIDWRAGYEWFKERLVDHDTANDNGGWQWAASTGTDAQPYFRIFNPM 395 Query: 413 IQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLD-----KNDLSLNYPLPIVDHKKAC 467 QG+R+DP +I+ ++PEL + I H W D + + + YP PIVDH + Sbjct: 396 TQGERYDPDAEYIKTYVPELRDAEPSVI---HEWPDLSLTQRRNAAPEYPDPIVDHSERR 452 Query: 468 HHTLNQYYAAKKQS 481 L + A+ +S Sbjct: 453 DQALEMFETARGES 466 >gi|221197023|ref|ZP_03570070.1| deoxyribodipyrimidine photo-lyase (DNA photolyase)(Photoreactivating enzyme) [Burkholderia multivorans CGD2M] gi|221203696|ref|ZP_03576714.1| deoxyribodipyrimidine photo-lyase (DNA photolyase)(Photoreactivating enzyme) [Burkholderia multivorans CGD2] gi|221175862|gb|EEE08291.1| deoxyribodipyrimidine photo-lyase (DNA photolyase)(Photoreactivating enzyme) [Burkholderia multivorans CGD2] gi|221183577|gb|EEE15977.1| deoxyribodipyrimidine photo-lyase (DNA photolyase)(Photoreactivating enzyme) [Burkholderia multivorans CGD2M] Length = 476 Score = 244 bits (624), Expect = 2e-62, Method: Compositional matrix adjust. Identities = 159/472 (33%), Positives = 238/472 (50%), Gaps = 34/472 (7%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 MSV +V R DLR++D+ AL AAC DA V+ V++ TP++ A +++ SL Sbjct: 1 MSVAIVLFRRDLRLSDHPALSAACARHDA-VLPVYVHTPDEDAIWSPGAASRWWLHHSLT 59 Query: 67 QVQKSLSQKG---IVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLL 123 + ++L Q+G +V Q + + C+ ++ R+YE + D L Sbjct: 60 SLDRALRQQGGRLLVMQNDPTIAVPALARAVGAQCV-------YWTRRYEPAAIACDAAL 112 Query: 124 EKRLQHR-VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAI 182 + L+ + V +S+ ++ P + + Q Y+V+TPF + L +L P+PA Sbjct: 113 KSALRAQGVAAQSYPGTLWQEPWKVATDSGQPYRVFTPFWRKLRTSLSDCH----PLPAA 168 Query: 183 RLTGPVTPSN---------IPRF-FDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVE 232 R +T + +PR +D + + GE A L +F E + Y + Sbjct: 169 RPRRWMTTDDSTAVEAIGLLPRVRWD---AGLAEAWRPGEAGAWERLAEFVDEALAEYGD 225 Query: 233 QRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYR 292 RD PA GTS+LS +L G ++P Q L+E + + +L EL WREF Sbjct: 226 ARDAPARMGTSRLSAHLHYGEITPTQILRTLQERASRTTDRDRPDLEPFLRELGWREFAH 285 Query: 293 HLMAFYPSVCMGKPFIPWTEKIEWNKDSHL-LQAWKQGYTGFPIIDAAMRQLNTIGWMHN 351 HL+ +P F + W D + L W+QG TG P++DA MRQL GWMHN Sbjct: 286 HLLYHFPHTTDAN-FDARFDTFAWAPDDNDDLARWQQGRTGIPLVDAGMRQLWQTGWMHN 344 Query: 352 RLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNP 411 R+RM+ ASFL K+L WR G +F L+D DLA+N GWQW A G D+ PYFR+FNP Sbjct: 345 RVRMVVASFLTKNLRRHWRHGARWFWDTLVDADLANNTLGWQWVAGCGADAAPYFRVFNP 404 Query: 412 TIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLS-LNYPLPIVD 462 +Q +FDP +++ WLPEL+ +P +H P W LS YP +VD Sbjct: 405 YLQAAKFDPDAAYLKRWLPELSALPANVLHQP--WKHPAALSACGYPASMVD 454 >gi|169236101|ref|YP_001689301.1| deoxyribodipyrimidine photo-lyase [Halobacterium salinarum R1] gi|47117035|sp|Q9HQ46|PHR_HALSA RecName: Full=Deoxyribodipyrimidine photo-lyase; AltName: Full=DNA photolyase; AltName: Full=Photoreactivating enzyme gi|148793|gb|AAA72749.1| photolyase (EC 4.1.99.3) [Halobacterium salinarum] gi|167727167|emb|CAP13953.1| deoxyribodipyrimidine photo-lyase [Halobacterium salinarum R1] Length = 481 Score = 244 bits (624), Expect = 2e-62, Method: Compositional matrix adjust. Identities = 162/486 (33%), Positives = 233/486 (47%), Gaps = 24/486 (4%) Query: 9 VHLVWLRNDLRITDNKALYAAC-------HNSDAKVIAVFIATPEQWRQHGISARQSHFI 61 + L W R DLR TDN+ L AA D +A ++ H R + + Sbjct: 1 MQLFWHRRDLRTTDNRGLAAAAPGVTAVDGGHDQGPVAAVFCFDDEVLAHAAPPRVAFML 60 Query: 62 --YASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRR 119 A+L + + L IV D L + T++ +N Y R Sbjct: 61 DALAALRERYRDLGSDLIV-------RHGDPAAVLPAVANDLDATRVVWNHDYSGLATDR 113 Query: 120 DKLLEKRLQHRVICKS-FDDSVLLPPGSILNHALQMYKVYTPF-RKALIQNLVQADLRSL 177 D + L + + F D+V PG I +A Y VYT F RK + Sbjct: 114 DAGVRDALDAAGVAHAQFHDAVHHRPGEIRTNAGDPYSVYTYFWRKWQDREKNPPAPEPE 173 Query: 178 PVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFP-IGEQNALHILRKFCKE-KVYYYVEQRD 235 P T S +P + F + P G A +L F + +Y Y ++RD Sbjct: 174 PADLAADTALADTSPLPSVQELGFAEPEAAVPDAGTAAARSLLDAFRESGDIYRYEDRRD 233 Query: 236 IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIK-PKSGAFSWLNELIWREFYRHL 294 P + TS+LSP+L G + R + + D + +++ +L WREFY + Sbjct: 234 YPHEEPTSRLSPHLKFGTIGIRTVYEAARAAKSDADTDDERENVAAFIGQLAWREFYAQV 293 Query: 295 MAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLR 354 + F +V + + F + IEW D LQAWK G TG+PI+DA MRQL +MHNR+R Sbjct: 294 LYFNQNV-VSENFKAYEHPIEWRDDPAALQAWKDGETGYPIVDAGMRQLRAEAYMHNRVR 352 Query: 355 MITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQ 414 MI A+FL KDLLVDWR G ++F +L D D A++NGGWQWAASTG D+ PYFR+FNP Q Sbjct: 353 MIVAAFLTKDLLVDWRAGYDWFREKLADHDTANDNGGWQWAASTGTDAQPYFRVFNPMTQ 412 Query: 415 GKRFDPQGTFIRHWLPELNNVPTQYIHAPH--SWLDKNDLSLNYPLPIVDHKKACHHTLN 472 G+R+DP +I ++PEL +VP IH+ H S ++ + YP PIVDH + + Sbjct: 413 GERYDPDADYITEFVPELRDVPADAIHSWHELSLSERRRHAPEYPDPIVDHSQRREDAIA 472 Query: 473 QYYAAK 478 + A+ Sbjct: 473 MFERAR 478 >gi|21230891|ref|NP_636808.1| photolyase-like protein [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66769110|ref|YP_243872.1| photolyase-like protein [Xanthomonas campestris pv. campestris str. 8004] gi|21112501|gb|AAM40732.1| photolyase-like protein [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66574442|gb|AAY49852.1| photolyase-like protein [Xanthomonas campestris pv. campestris str. 8004] Length = 484 Score = 244 bits (623), Expect = 2e-62, Method: Compositional matrix adjust. Identities = 163/489 (33%), Positives = 238/489 (48%), Gaps = 25/489 (5%) Query: 2 KATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFI 61 + MS +VW R DLR+ DN AL AA ++ I ++I P + Q A + Sbjct: 8 RCRVCMSYAIVWFRRDLRLEDNPALRAAL-DAGHDPIPLYIDAPHEEGQWAPGAASRAWR 66 Query: 62 YASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDK 121 + SL + SL +G Q DS + LD+ Q +++NR+YE RD Sbjct: 67 HRSLAALDASLRARGSALLIRQ----GDSAQVLDAVIAQTEAVAVYWNRKYEPATQPRDA 122 Query: 122 LLEKRLQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVP 180 +++ L+ R + +S + ++L P ++ + YKV+TPF + + L D P Sbjct: 123 QIKRSLRERGLEVQSCNAALLFEPWTLATQQGRPYKVFTPFWRNALTQLRLPDAMPAPRS 182 Query: 181 AIRLTGPVTPSNIPRFFDYPFQAIDPMF----PIGEQNALHILRKFCKEKVYYYVEQRDI 236 L + ++ P A D F GE A +L F + Y E RD Sbjct: 183 LPPLPASLDGVHVDALNLLPTPAWDQGFWEHWQPGEAGAHEMLEIFVDGALSGYRENRDR 242 Query: 237 PAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAF--SWLNELIWREFYRHL 294 P GTSQLSP+L G ++P + + L+ + ++GA ++ +L WR+F HL Sbjct: 243 PDRVGTSQLSPHLHFGEIAPWRIASTLEAQR-----SARNGADIDGYIRQLGWRDFAYHL 297 Query: 295 MAFYPSVCMGKPFIPWTEKIEWNK-DSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRL 353 + +P + P +W D L AW++G TG PI+DA +RQL GWMHNR+ Sbjct: 298 LHHFPDTTT-QNLNPRFAGFDWATVDPVTLDAWQRGRTGIPIVDAGLRQLWHTGWMHNRV 356 Query: 354 RMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTI 413 RMI AS L K L V W G +F L+D DLA+N GWQW A TG D+ PYFR+FNP Sbjct: 357 RMIVASLLCKHLRVHWLEGARWFWDTLVDADLANNTMGWQWVAGTGADAAPYFRVFNPVT 416 Query: 414 QGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDK---NDLSLNYP-LPIVDHKKACHH 469 Q ++FDPQ T+I W+PEL +P + AP WL L+ YP PI+ + Sbjct: 417 QAEKFDPQATYITRWIPELAALPVKERFAP--WLHPLSLARLAPTYPRAPIIGLAEGRDA 474 Query: 470 TLNQYYAAK 478 L Y + Sbjct: 475 ALAAYAGTR 483 >gi|258654813|ref|YP_003203969.1| deoxyribodipyrimidine photo-lyase [Nakamurella multipartita DSM 44233] gi|258558038|gb|ACV80980.1| Deoxyribodipyrimidine photo-lyase [Nakamurella multipartita DSM 44233] Length = 459 Score = 244 bits (622), Expect = 3e-62, Method: Compositional matrix adjust. Identities = 159/476 (33%), Positives = 228/476 (47%), Gaps = 32/476 (6%) Query: 8 SVHLVWLRNDLRITDNKALYAAC-HNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 S L+W R DLR+ D+ AL AA HN +V+ VF+A G R + +L Sbjct: 3 STSLLWFRRDLRLGDHPALAAAADHNH--RVLGVFVADDVPLDASGSPRRA--VLARTLA 58 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 + +++ + ++ S +D+ + Y R RRD+ +++ Sbjct: 59 ALAQAMDGRLLIAHGRPRSVLPRLARAVDADVVHVSADYGPYGR-------RRDEQVQRA 111 Query: 127 LQHR-VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185 LQ V + + PG + + Y V+TPF + + + RS + Sbjct: 112 LQDAGVEWVATGSPYAVAPGRVRKSNGERYAVFTPFYRGWTDHGWRKPARS--GSGVDWV 169 Query: 186 GPVTPSNI----PRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQG 241 P I P+ + A + +GEQ AL R F E + Y RD P G Sbjct: 170 DPGEVDGITAHDPQEYARTVPAGMSLPEVGEQAALDGWRTFRDEALDDYDGDRDRPDRPG 229 Query: 242 TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSV 301 TS +S YL G + PR DL + +GA S+ EL WREFY + P Sbjct: 230 TSHMSVYLKWGSIHPRTL-------LADLAGRRSTGAASYRRELAWREFYADSVFHLPES 282 Query: 302 CMGKPFIPWTEKIEWNKD---SHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITA 358 P +++ W+ +AW+ G TG+P IDA MRQL GWMHNRLRM TA Sbjct: 283 VW-TSVDPVIDRMAWDSGQPAEERFEAWRAGRTGYPFIDAGMRQLLAEGWMHNRLRMATA 341 Query: 359 SFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRF 418 SFL+KDL + W+ G E+F+ L+DGD ASNN GWQW A +G + P+FRIFNP QG++F Sbjct: 342 SFLIKDLHLPWQRGAEHFLEHLVDGDYASNNHGWQWVAGSGAQAAPFFRIFNPLTQGEKF 401 Query: 419 DPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQY 474 DP G F+R ++PEL +VP + +H P W + YP PIVDH L ++ Sbjct: 402 DPSGDFVRRYIPELRDVPGRKVHRP--WELDGGVPAGYPEPIVDHADERAEALRRW 455 >gi|126695647|ref|YP_001090533.1| putative DNA photolyase [Prochlorococcus marinus str. MIT 9301] gi|126542690|gb|ABO16932.1| putative DNA photolyase [Prochlorococcus marinus str. MIT 9301] Length = 478 Score = 244 bits (622), Expect = 3e-62, Method: Compositional matrix adjust. Identities = 167/472 (35%), Positives = 241/472 (51%), Gaps = 33/472 (6%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 L W R DLRI DN++L A S+A + + +I ++R + F+ SL ++ Sbjct: 7 LFWHRKDLRIFDNQSLIKAFSLSNA-ITSTYIFDKNYPHDFNANSR-AWFLGNSLQELGN 64 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130 + + G + D + + + +F+N+ E E+ RD ++K L+ + Sbjct: 65 NWKKMGSRLIMEE----GDPVLIIPQLAKKIDAKFVFWNKSIEPYEINRDLKIKKNLEEQ 120 Query: 131 VI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKAL---------------IQNLVQADL 174 I D +L+ P I + + Y VY PF K L + D Sbjct: 121 NIQVIETWDHLLIEPLKIFSGNNKPYSVYGPFYKNLKSKMNLLGPYDQDKVVFQFKDIDN 180 Query: 175 RSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEK-VYYYVEQ 233 + I + V I + +P I P P GE A IL F EK +Y Y Sbjct: 181 KLKENKTINSSDSVLEKFI-KNIKFPGSNICPCKP-GENAAETILENFINEKKIYSYDSA 238 Query: 234 RDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAF-SWLNELIWREFYR 292 RD P+ GTS LS L G +S R+ WN D + + +W EL+WREFY+ Sbjct: 239 RDFPSHNGTSFLSASLRFGTISIRKIWNATLNLNSDCANRVNYLSIETWQKELVWREFYQ 298 Query: 293 HLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNR 352 H + +P + G P+ + W ++ Q W G TG PI+DAAMRQLN+ GWMHNR Sbjct: 299 HCLFHFPELEKG-PYRKKWDHFPWQNNNEWFQHWSNGETGVPIVDAAMRQLNSTGWMHNR 357 Query: 353 LRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPT 412 RMI ASFLVKDL+ +W++GE+ FM L+DGDLA+NNGGWQW+AS+G D P RIFNP Sbjct: 358 CRMIVASFLVKDLICNWQMGEKKFMETLVDGDLAANNGGWQWSASSGMDPKP-LRIFNPY 416 Query: 413 IQGKRFDPQGTFIRHWLPELNNVP-TQYIHAPHSWLDKNDLSLNYPLPIVDH 463 Q K+FDP +I++W+PEL+ V ++ ++ S L+KN NY PIV+H Sbjct: 417 TQAKKFDPICEYIKYWIPELSKVSNSELLNGEISNLEKN----NYSSPIVNH 464 >gi|188992258|ref|YP_001904268.1| Putative photolyase [Xanthomonas campestris pv. campestris str. B100] gi|167734018|emb|CAP52224.1| Putative photolyase [Xanthomonas campestris pv. campestris] Length = 520 Score = 243 bits (621), Expect = 3e-62, Method: Compositional matrix adjust. Identities = 163/489 (33%), Positives = 237/489 (48%), Gaps = 25/489 (5%) Query: 2 KATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFI 61 + MS +VW R DLR+ DN AL AA ++ I ++I P + Q A + Sbjct: 44 RCRVCMSYAIVWFRRDLRLEDNPALRAAL-DAGHDPIPLYIDAPHEEGQWAPGAASRAWR 102 Query: 62 YASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDK 121 + SL + SL +G Q DS + LD+ Q +++NR+YE RD Sbjct: 103 HRSLAALDASLRARGSALLIRQ----GDSAQVLDAVIAQTEAVAVYWNRKYEPATQPRDA 158 Query: 122 LLEKRLQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVP 180 +++ L+ R + +S + ++L P ++ YKV+TPF + + L D P Sbjct: 159 QIKRSLRERGLEVQSCNAALLFEPWTLATQQGGPYKVFTPFWRNALTQLRLPDAMPAPRS 218 Query: 181 AIRLTGPVTPSNIPRFFDYPFQAIDPMF----PIGEQNALHILRKFCKEKVYYYVEQRDI 236 L + ++ P A D F GE A +L F + Y E RD Sbjct: 219 LPPLPASLDGVHVDALNLLPTPAWDQGFWEHWQPGEAGAHEMLEIFVDGALSGYRENRDR 278 Query: 237 PAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAF--SWLNELIWREFYRHL 294 P GTSQLSP+L G ++P + + L+ + ++GA ++ +L WR+F HL Sbjct: 279 PDRVGTSQLSPHLHFGEIAPWRIASTLEAQR-----SARNGADIDGYIRQLGWRDFAYHL 333 Query: 295 MAFYPSVCMGKPFIPWTEKIEWNK-DSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRL 353 + +P + P +W D L AW++G TG PI+DA +RQL GWMHNR+ Sbjct: 334 LHHFPDTTT-QNLNPRFAGFDWATVDPVTLDAWQRGRTGIPIVDAGLRQLWHTGWMHNRV 392 Query: 354 RMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTI 413 RMI AS L K L V W G +F L+D DLA+N GWQW A TG D+ PYFR+FNP Sbjct: 393 RMIVASLLCKHLRVHWLEGARWFWDTLVDADLANNTMGWQWVAGTGADAAPYFRVFNPVT 452 Query: 414 QGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDK---NDLSLNYP-LPIVDHKKACHH 469 Q ++FDPQ T+I W+PEL +P + AP WL L+ YP PI+ + Sbjct: 453 QAEKFDPQATYITRWIPELAALPVKERFAP--WLHPLSLARLAPTYPRAPIIGLAEGRDA 510 Query: 470 TLNQYYAAK 478 L Y + Sbjct: 511 ALAAYAGTR 519 >gi|145224666|ref|YP_001135344.1| deoxyribodipyrimidine photo-lyase [Mycobacterium gilvum PYR-GCK] gi|145217152|gb|ABP46556.1| deoxyribodipyrimidine photo-lyase type I [Mycobacterium gilvum PYR-GCK] Length = 449 Score = 243 bits (621), Expect = 4e-62, Method: Compositional matrix adjust. Identities = 153/471 (32%), Positives = 237/471 (50%), Gaps = 37/471 (7%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 ++W R DLR+ D AL AA D V+A ++ P G +R+ ++Y +L +++ Sbjct: 4 VLWFRRDLRLADLPALVAAAE-VDGDVLACYVLDPRLKATGG--SRRLQYLYDALRDLRE 60 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130 SL + ++ + D + + + + + + +RRD+ + L Sbjct: 61 SLDGRLLITR-------GDPVSRIPVLAAAVGASSVHVSEDFTPFGMRRDEQVRDALGD- 112 Query: 131 VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTP 190 V + L+ PG + YKV+TPF A Q+ + S P P+ P Sbjct: 113 VELVATGSPYLVSPGRVTKGDGSPYKVFTPFFDAWRQHGWRPPAESGP-PSAHWLDPADV 171 Query: 191 SNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLS 250 + P D P ++ P GE A ++F + + Y E R+ P + TS++S +L Sbjct: 172 AGKPGITDIPDAGVELDLPAGETAARRQWKQFVDDGLAGYAEDRNRPDLAATSRMSAHLK 231 Query: 251 IGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPW 310 G + PR L GA ++L EL +R+FY ++A +P + W Sbjct: 232 FGTIHPRTLAADLGR---------GKGAQAYLRELAFRDFYAAVVAEWPRST----WWNW 278 Query: 311 TE-----KIEWNKDSH-LLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364 +++ D+ +AWK G TGFPI+DA MRQL G++HNR+RMI ASFLVKD Sbjct: 279 NSTFDAIEVDDGPDAQRAFEAWKAGRTGFPIVDAGMRQLAETGFVHNRVRMIVASFLVKD 338 Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424 L + W+ G +F+ QL DGD+A+N GWQWAA G D+ PYFR+FNPT QGK+FDP G + Sbjct: 339 LHLPWQWGARWFLDQLTDGDMANNQHGWQWAAGCGTDAAPYFRVFNPTTQGKKFDPAGVY 398 Query: 425 IRHWLPELNNVPTQY-IHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQY 474 ++ W+ EL +V + +H LD+ D +YP PIVDH + L +Y Sbjct: 399 VKRWVEELRDVASSVDVHN----LDR-DRPADYPEPIVDHAQERAEALRRY 444 >gi|166712667|ref|ZP_02243874.1| photolyase [Xanthomonas oryzae pv. oryzicola BLS256] Length = 484 Score = 243 bits (621), Expect = 4e-62, Method: Compositional matrix adjust. Identities = 170/494 (34%), Positives = 248/494 (50%), Gaps = 33/494 (6%) Query: 1 MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQ---WRQHGISARQ 57 ++ MS +VW R DLR+ DN AL AA ++ I ++I P + W G S Sbjct: 7 VRCRVRMSYAIVWFRRDLRLQDNPALRAAL-DAGHHPIPLYIDAPHEEGEWTPGGASRTW 65 Query: 58 SHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEV 117 H A+L ++L G+V + DS + LD Q +++NR+YE Sbjct: 66 RHRSLAALEDALRALG-SGLVIRA------GDSAQVLDDVIAQTGAVAVYWNRKYEPATQ 118 Query: 118 RRDKLLEKRLQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPF-RKALIQNLVQADLR 175 RD +++ L+ R I +S + ++L P + YKV+TPF R AL Q + A Sbjct: 119 PRDAQIKRALRERGIEAQSCNCALLFEPWQLSTQQGGPYKVFTPFWRNALTQLQLPATAP 178 Query: 176 SL----PVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYV 231 + P+PA+ T + + ++ Q + GE A +L F + Y Sbjct: 179 APGSLPPLPAMLKTDALDTLQLVPSLNWD-QGFWEHWHAGEAGAHEMLEIFIDGGLSGYR 237 Query: 232 EQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAF--SWLNELIWRE 289 E RD P GTSQLSP+L G ++P + + L+ + ++GA ++ +L WR+ Sbjct: 238 ENRDRPDRVGTSQLSPHLHFGEIAPWRIASALEAQRT-----ARNGAEIDGYIRQLGWRD 292 Query: 290 FYRHLMAFYPSVCMGKPFIPWTEKIEWNK-DSHLLQAWKQGYTGFPIIDAAMRQLNTIGW 348 F HL+ +P + P E +W K D LQAW++G TG PI+DA MRQL GW Sbjct: 293 FAYHLLHHFPDTT-NQNLNPRFEGFDWAKVDPVALQAWQRGRTGVPIVDAGMRQLWHTGW 351 Query: 349 MHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRI 408 MHNR+RMI ASFL K L + W G +F L+D DLA+N GWQW A TG D+ PYFR+ Sbjct: 352 MHNRVRMIVASFLCKHLRIHWIEGARWFWDTLVDADLANNTLGWQWVAGTGADAAPYFRV 411 Query: 409 FNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSL---NYP-LPIVDHK 464 FNP Q ++FDP T+I W+PEL +P + AP WL L+ YP PI+ Sbjct: 412 FNPVTQAEKFDPHATYITRWVPELGKLPVKERFAP--WLHPLSLARFAPEYPRTPIIGLA 469 Query: 465 KACHHTLNQYYAAK 478 + L Y ++ Sbjct: 470 EGRDAALAAYSKSR 483 >gi|217976568|ref|YP_002360715.1| Deoxyribodipyrimidine photo-lyase [Methylocella silvestris BL2] gi|217501944|gb|ACK49353.1| Deoxyribodipyrimidine photo-lyase [Methylocella silvestris BL2] Length = 486 Score = 243 bits (620), Expect = 5e-62, Method: Compositional matrix adjust. Identities = 165/501 (32%), Positives = 257/501 (51%), Gaps = 39/501 (7%) Query: 1 MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFI--ATPEQWRQHGISARQS 58 M A + +VW R+DLR+ DN+AL AA ++ ++ V+I +R G +AR Sbjct: 1 MAAPKTQNTAIVWFRDDLRLADNEALAAAL-STGGPLLCVYILEDGTAGFRPLGGAARW- 58 Query: 59 HFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVR 118 +++ SL + + ++ KG C ++ L + + + R+Y E+ Sbjct: 59 -WLHHSLQALGQDIAAKGGRLDLF-CG---EARRILPALAEAAGARIICWTRRYGGPEMA 113 Query: 119 RDKLLEKRLQ-HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKA------LIQNLVQ 171 D L+ + + V KSF+ +L P I + VYTP+ +A + + L Sbjct: 114 VDAALKAQFKTSGVEAKSFNGHLLHEPWDITRGDGHGFAVYTPYWRAASAAAQVGEPLPA 173 Query: 172 AD-LRSLPVP--AIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVY 228 D L + P+P A+R T + +P D+ + + GE A L+ F + ++ Sbjct: 174 PDRLPAAPIPRGALRTTSIEALALLPEKPDWA-GGLRAAWRPGENGAQERLKAFLEGEIA 232 Query: 229 YYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWR 288 Y +R+ P+ S+LSP+L G + PRQ + ++ + + K G +L EL WR Sbjct: 233 SYSLERNRPSADAVSRLSPHLRFGEIGPRQIFAAVRTAWDNAAQK---GGVKFLAELGWR 289 Query: 289 EFYRHLMAFYPSVC---MGKPF--IPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQL 343 EF HL ++P + + F +PW E L AW++G TG+P+IDA MR+L Sbjct: 290 EFNYHLSFYHPDAARQNIQRRFDKMPWREPA-----PRELSAWQRGETGYPLIDAGMREL 344 Query: 344 NTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSV 403 G+MHNR+RM+ ASFL+K LL+DWRIGE +F L D D A+N WQW A +G D+ Sbjct: 345 WATGYMHNRVRMVVASFLIKHLLIDWRIGENWFWDTLCDADPANNPMNWQWVAGSGADAA 404 Query: 404 PYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIH----APHSWLDKNDLSL--NYP 457 PYFRIFNP +QG++FD G ++R W+PEL +P ++IH AP + L + L NYP Sbjct: 405 PYFRIFNPVLQGEKFDAAGDYVRRWIPELAKLPNKWIHKPFAAPPALLRGAGVELGKNYP 464 Query: 458 LPIVDHKKACHHTLNQYYAAK 478 PIVD + L + K Sbjct: 465 RPIVDLAEGRARALAAFEKVK 485 >gi|300790232|ref|YP_003770523.1| deoxyribodipyrimidine photo-lyase [Amycolatopsis mediterranei U32] gi|299799746|gb|ADJ50121.1| deoxyribodipyrimidine photo-lyase [Amycolatopsis mediterranei U32] Length = 448 Score = 243 bits (620), Expect = 5e-62, Method: Compositional matrix adjust. Identities = 158/469 (33%), Positives = 237/469 (50%), Gaps = 38/469 (8%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 ++W R DLR+ D+ AL A +S V+A+++ E + G + R++ F+Y L ++ + Sbjct: 8 VLWFRRDLRLGDHAALLEASRHS-KHVLALYVLD-EALLKPGGAPREA-FLYGCLEKLNE 64 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL-QH 129 L + ++ + + + + + + + Y R RRD + K L +H Sbjct: 65 QLGGRLMLVRGEPAAEVVKAAKKIGAAAVHVSADTGPYGR-------RRDASVAKALAEH 117 Query: 130 RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP-- 187 + S + PG + Y+V+TPF +A R PA TGP Sbjct: 118 NIEWVETGSSYAVTPGRVTKPDGSPYRVFTPFFRAWTA-------RGWHSPAD--TGPSL 168 Query: 188 VTPSNIPRFFDYP-FQAIDPMFP-IGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245 V PR P A+ P GEQ AL + +F + + Y E RD P +GT++L Sbjct: 169 VDWVEPPRSLKIPKAPAVSATLPEPGEQAALDVWHEFLDDGIETYDEDRDRPDREGTTRL 228 Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305 SPYL G + PR DL + GA S +E+ WREF+ ++ P + Sbjct: 229 SPYLRWGCIHPRTI-------LADLAGDDRVGAKSLRSEICWREFHADVLWHRPETAR-E 280 Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365 + + ++++ D + W G TG+PI+DA MRQL GWMHNR+RM+ ASFLVKDL Sbjct: 281 NYDHRFDGMKYDDDREAFERWCAGRTGYPIVDAGMRQLLAEGWMHNRVRMVVASFLVKDL 340 Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425 + W +G +FM L+DGDLASN WQW A G D+ PYFRIFNPT QG++FDP G ++ Sbjct: 341 HLPWWLGARHFMKHLVDGDLASNQLNWQWVAGCGTDAAPYFRIFNPTTQGEKFDPAGDYV 400 Query: 426 RHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQY 474 R ++PEL +VP + +H D YP P+VDH +L +Y Sbjct: 401 RKYVPELRSVPGKAVH------QLKDRPEGYPEPMVDHAHERQVSLERY 443 >gi|162146574|ref|YP_001601033.1| deoxyribodipyrimidine photo-lyase [Gluconacetobacter diazotrophicus PAl 5] gi|161785149|emb|CAP54694.1| putative deoxyribodipyrimidine photo-lyase [Gluconacetobacter diazotrophicus PAl 5] Length = 463 Score = 243 bits (620), Expect = 6e-62, Method: Compositional matrix adjust. Identities = 155/466 (33%), Positives = 232/466 (49%), Gaps = 39/466 (8%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 +VW R D RI DN AL A + V + H A +++ ++ + + Sbjct: 10 IVWFREDFRIADNMALLEAEKRGQPTLCIVILDD-----AHLPGAAARWWLHGAIRSLDE 64 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130 +L +G+ H ++ L + +F+NR+Y+ D ++ L+ R Sbjct: 65 TL--RGMGGALHVFRGAARAV--LAEIVRKTGAGAVFWNRRYDPAGREADTAIKADLRAR 120 Query: 131 -VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALI------------QNLVQADLRSL 177 + +SF ++L P S+ ++ YK++T F +A + LV A Sbjct: 121 GLTVRSFPGALLHEPWSVCTRSVAPYKIFTAFWRAACALPAPFPPHPAPERLVFAP--PP 178 Query: 178 PVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIP 237 P+P +T +PR D+ D M+ GE+ A L F + Y RD P Sbjct: 179 PMPDSLITRHEQDGLLPRHPDWAGGLRD-MWSPGEEEAGDQLSDFLRHDGAGYATARDFP 237 Query: 238 AIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAF 297 + TS+LSP+L G +SP Q W+ K+ +L EL WR+F L+ F Sbjct: 238 GDEATSRLSPFLRFGHVSPAQVWHAATR---------KACPDKFLMELGWRDFAWSLLFF 288 Query: 298 YPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMIT 357 P + + P + + W D L AW++G TG+P++DA MR+L GWMHNR+RM+ Sbjct: 289 NPDLAT-RNLRPEFDAMPWRHDPGGLAAWQRGQTGYPLVDAGMRELWHTGWMHNRVRMVA 347 Query: 358 ASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKR 417 ASFLVK LL+DWR GE +F L+D D ASN WQW A TG D+ PYFR+ NP +Q ++ Sbjct: 348 ASFLVKHLLIDWREGERWFADTLVDHDPASNPMNWQWNAGTGVDAAPYFRVMNPILQSRK 407 Query: 418 FDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDH 463 FDP G +IR W+PEL ++ IHAP W ++ + YP PIVDH Sbjct: 408 FDPHGVYIRRWVPELAHLSDDAIHAP--W--ESGATHPYPAPIVDH 449 >gi|307354928|ref|YP_003895979.1| deoxyribodipyrimidine photo-lyase [Methanoplanus petrolearius DSM 11571] gi|307158161|gb|ADN37541.1| Deoxyribodipyrimidine photo-lyase [Methanoplanus petrolearius DSM 11571] Length = 475 Score = 243 bits (619), Expect = 6e-62, Method: Compositional matrix adjust. Identities = 163/474 (34%), Positives = 239/474 (50%), Gaps = 40/474 (8%) Query: 2 KATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQH-GISARQSHF 60 + T ++S H+ DLRI DN L +A +S++ VI F A ++ + + F Sbjct: 3 EKTFSLSAHI--FTRDLRIDDNPPLLSALASSES-VITFFAAEKNLATENPALCENRLAF 59 Query: 61 IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120 + SL + ++++KG ++ +D+ L + V ++ R Y ++R+ Sbjct: 60 LSESLSDLSGAIAEKGGEIRF-----YDEGALKLAEKLCRTGVEAVYMTRDYTPYAIKRE 114 Query: 121 KLLEKRLQHRVICKSFDDSVLLPPGSILNHALQM-------YKVYTPF-RKALIQNLVQA 172 L+K C S PG++LN + YKV+TPF R A + + + Sbjct: 115 NSLKK------TCNDAGCSFFPVPGALLNEPEDVRKSDGEPYKVFTPFYRNASLIPVHEP 168 Query: 173 DLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVE 232 + + + +IP +A + F G L +L + + K Y + Sbjct: 169 ETCTFQNFSREELFDGASHDIPFGKSGTEEAKNRAFSGGRSEGLRLLGETGRLK--NYED 226 Query: 233 QRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYR 292 +RD PA TS LS +L G +S R+ R+ + + P G + +L WR+F+ Sbjct: 227 ERDFPAKACTSMLSAHLRFGTVSVREICRRISD-----TLGPGHG---LIRQLYWRDFFT 278 Query: 293 HLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNR 352 H+ YP V G PF E + W L W +G TGFPIIDA MR+LN G+MHNR Sbjct: 279 HIAYHYPHVFKG-PFQKRFESLHWTDSKELFDKWCKGMTGFPIIDAGMRELNDTGYMHNR 337 Query: 353 LRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPT 412 R+ ASFLVKDL +DWR GE YF S+L D D + NNG WQW+ASTG D+ PYFRIFNP Sbjct: 338 ERLAAASFLVKDLHIDWRSGERYFASKLTDYDPSVNNGNWQWSASTGCDAQPYFRIFNPW 397 Query: 413 IQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDL--SLNYPLPIVDHK 464 +Q K+FDP +IR W+PEL+++ + IH LDK YP PIVDHK Sbjct: 398 LQQKKFDPDCIYIRRWVPELSDLEPKEIHN----LDKTGSVPPAGYPNPIVDHK 447 >gi|53719958|ref|YP_108944.1| putative DNA photolyase [Burkholderia pseudomallei K96243] gi|126453768|ref|YP_001066985.1| deoxyribodipyrimidine photolyase [Burkholderia pseudomallei 1106a] gi|134277838|ref|ZP_01764553.1| deoxyribodipyrimidine photolyase [Burkholderia pseudomallei 305] gi|226200012|ref|ZP_03795562.1| deoxyribodipyrimidine photolyase [Burkholderia pseudomallei Pakistan 9] gi|242315962|ref|ZP_04814978.1| deoxyribodipyrimidine photolyase [Burkholderia pseudomallei 1106b] gi|254195952|ref|ZP_04902378.1| deoxyribodipyrimidine photolyase [Burkholderia pseudomallei S13] gi|254296960|ref|ZP_04964413.1| deoxyribodipyrimidine photolyase [Burkholderia pseudomallei 406e] gi|52210372|emb|CAH36352.1| putative DNA photolyase [Burkholderia pseudomallei K96243] gi|126227410|gb|ABN90950.1| deoxyribodipyrimidine photolyase [Burkholderia pseudomallei 1106a] gi|134251488|gb|EBA51567.1| deoxyribodipyrimidine photolyase [Burkholderia pseudomallei 305] gi|157807746|gb|EDO84916.1| deoxyribodipyrimidine photolyase [Burkholderia pseudomallei 406e] gi|169652697|gb|EDS85390.1| deoxyribodipyrimidine photolyase [Burkholderia pseudomallei S13] gi|225928068|gb|EEH24105.1| deoxyribodipyrimidine photolyase [Burkholderia pseudomallei Pakistan 9] gi|242139201|gb|EES25603.1| deoxyribodipyrimidine photolyase [Burkholderia pseudomallei 1106b] Length = 486 Score = 243 bits (619), Expect = 6e-62, Method: Compositional matrix adjust. Identities = 160/503 (31%), Positives = 250/503 (49%), Gaps = 42/503 (8%) Query: 1 MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHF 60 M ++ +++ +VW R+DLR++D+ AL A S VI V++ E+ + + Sbjct: 1 MSSSISIAPAVVWFRDDLRVSDHPALMRAA-ESGRPVIGVYVFD-ERAGGRPLGGAARWW 58 Query: 61 IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120 ++ SL + +L+ G + D + S+ ++++R+Y + D Sbjct: 59 LHGSLRALGAALAALGGTLALLRGDEHDTIV----SFAAALGAGAVYWSRRYALAARAVD 114 Query: 121 KLLEKRLQHRVIC-KSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPV 179 ++ L + I ++F+ S+L PG ++N + Y+V++ + +A ++ R +P Sbjct: 115 NAVQTALDAQGIAVETFNASLLFEPGDLVNADGRPYQVFSAYWRAAMR-------RGVPA 167 Query: 180 PAI----RLTGPVTPSNIPR-FFDYPFQAIDPMFP-----------IGEQNALHILRKFC 223 P + RL G P+ + R ++P P GE A LR F Sbjct: 168 PPLGAPRRLNGGALPAALARQCVALDALGLEPTGPDWAGGLRDAWRFGEDAAHRRLRAFV 227 Query: 224 KEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLN 283 ++ Y +RD P I TS+LSPY+ G LS RQ W+ + + ++ +L+ Sbjct: 228 DSRLGGYAAERDRPGIASTSRLSPYVRFGNLSARQLWHAAADAYAHGAAT-QADLDKFLS 286 Query: 284 ELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQL 343 EL WREF + +P + + + + W D L AW++G TG+P +DA MR+L Sbjct: 287 ELGWREFGWTQLHHFPDLPR-RNLRHTLDGMPWRDDPAALAAWRRGATGYPFVDAGMREL 345 Query: 344 NTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSV 403 GWMHNR+RM+ ASFLVK LL+DWR GE +F L+D D ASN WQW A G D+ Sbjct: 346 WATGWMHNRVRMVCASFLVKHLLIDWRAGEAWFWDTLVDADAASNAANWQWVAGCGADAA 405 Query: 404 PYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND--------LSLN 455 PYFRIFNP QG++FDP G ++R W+PEL +P IH P W L Sbjct: 406 PYFRIFNPVAQGRKFDPDGAYVRRWVPELAGLPPATIHEP--WAAPGAQLAAAGVRLGET 463 Query: 456 YPLPIVDHKKACHHTLNQYYAAK 478 YPLPIV H A L+ + A + Sbjct: 464 YPLPIVAHDAARRRALDAFGAIR 486 >gi|222148397|ref|YP_002549354.1| DNA photolyase [Agrobacterium vitis S4] gi|221735385|gb|ACM36348.1| DNA photolyase [Agrobacterium vitis S4] Length = 483 Score = 243 bits (619), Expect = 6e-62, Method: Compositional matrix adjust. Identities = 166/490 (33%), Positives = 249/490 (50%), Gaps = 43/490 (8%) Query: 8 SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67 S ++W R DLR+ DN+AL AA + VI ++I PE+ + Q+ +++ SL+ Sbjct: 7 SPTILWFRKDLRLDDNRALLAALQAA-GPVIPLYIREPEEMGTGPLGPAQAWWLHHSLVS 65 Query: 68 VQKSLSQKG--IVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125 + +SL G +V + L + + +NR+Y+ + + D L+ Sbjct: 66 LDQSLQSYGSRLVLRRGPPGQV------LRHLIEETGSKAVHWNRRYDPSGMAIDAELKA 119 Query: 126 RLQHRVICKSFDDSVLL-PPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL 184 L+ + + LL P + + ++VYTPF +AL + Q D P P R Sbjct: 120 ALRSDGLEATSHAGFLLHEPSKVKTGSGGPFRVYTPFWRALEK---QGDP---PPPVERP 173 Query: 185 TGPVTPSNIP---RFFDYPFQAIDP--------MFPIGEQNALHILRKFCKEKVYYYVEQ 233 P++ P R D+ P ++ GE A L +F + Y Q Sbjct: 174 KTLHNPAHWPDSDRLEDWQLLPTKPDWAKEFSEIWTPGEPGAQDKLSQFIDHGLKGYRTQ 233 Query: 234 RDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRH 293 RD PA+ TS LSP+L++G +SP + W+ D+ + EL+WREF H Sbjct: 234 RDFPALPHTSGLSPHLALGEISPARIWHATIGLGDDVST---DDYVHFRKELVWREFSYH 290 Query: 294 LMAFYPSVCMGKPFIPWTEKIE---WNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMH 350 L+ + + W ++ W K++ L AW++G TG+PI+DA MRQL G MH Sbjct: 291 LLFHFADLASQN----WNDRFNDFPWKKNAEFLSAWQRGQTGYPIVDAGMRQLWRHGVMH 346 Query: 351 NRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFN 410 NR+RMI ASFL+KDL++DWR GE +F L+D D ASN WQW A +G D+ P+FRIFN Sbjct: 347 NRVRMIVASFLIKDLMIDWREGEAWFRYTLVDADPASNAASWQWVAGSGADASPFFRIFN 406 Query: 411 PTIQGKRFDPQGTFIRHWLPELNNVPTQYIH----APHSWLDKNDLSLN--YPLPIVDHK 464 P Q ++FDP G +IR ++PEL +P IH AP L+K ++L YP P+VDHK Sbjct: 407 PITQSEKFDPDGDYIRQFVPELAKLPNNLIHRPFEAPAPLLEKAGITLGKTYPAPLVDHK 466 Query: 465 KACHHTLNQY 474 +A L Y Sbjct: 467 RARAVALEAY 476 >gi|110679555|ref|YP_682562.1| deoxyribodipyrimidine photolyase, putative [Roseobacter denitrificans OCh 114] gi|109455671|gb|ABG31876.1| deoxyribodipyrimidine photolyase, putative [Roseobacter denitrificans OCh 114] Length = 472 Score = 243 bits (619), Expect = 6e-62, Method: Compositional matrix adjust. Identities = 169/481 (35%), Positives = 241/481 (50%), Gaps = 37/481 (7%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISAR-QSHFIYASLLQVQ 69 LVW R DLR++D+ AL AA + + VI VFI +Q G + R + L + Sbjct: 7 LVWFRRDLRLSDHPALDAAVKSGN-PVIPVFIHD-DQVETLGAAPRWRLGLGIGHLSETL 64 Query: 70 KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL-Q 128 + L+ + I+ + ++E L + L+ +F++R Y+ V RD ++ L Q Sbjct: 65 EGLNSRLILRR-------GPALETLRTLILETGAGAVFWSRLYDPAAVERDTEVKAALKQ 117 Query: 129 HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRS---LPVPAIRLT 185 + +SF ++ P ++ YKVYTPF + V A L + + PA Sbjct: 118 DGIDARSFGGHLMFEPWTVETKTGGFYKVYTPFWNMVKNRDVDAPLSAPSRIDAPAA-WP 176 Query: 186 GPVTPS--NIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS 243 G T S N+ D + P +GE A L F + V Y RD PAI GTS Sbjct: 177 GSDTLSDWNMGAAMDRGAAVVAPYVRLGEAAAQTRLNTFIDKIVAGYDTTRDQPAIDGTS 236 Query: 244 QLSPYLSIGVLSPRQCWN---RLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPS 300 LS L++G +SP QCW R +EE K GA ++L EL+WREF HLM P Sbjct: 237 GLSENLALGEISPHQCWYAGLRAREE-------EKPGAETFLKELVWREFAYHLMHHTPR 289 Query: 301 VCMGKPFIPWTEKIEWNKD--SHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITA 358 + G W + WN+D + ++ W+QG TG +DAAMR++ G MHNR RMI A Sbjct: 290 ILTGNWKEDW-DSFPWNRDETTQAVRRWQQGRTGIQFVDAAMREMYVTGRMHNRGRMIVA 348 Query: 359 SFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRF 418 S+L K LL DW+IG ++F L+D D ASN GWQW+A +G D+ PYFR+FNP Q +F Sbjct: 349 SYLTKHLLSDWKIGLKWFEDCLIDWDPASNAMGWQWSAGSGPDATPYFRVFNPVTQLDKF 408 Query: 419 DPQGTFIRHWLPELNNVPTQ----YIHA-PHSWLDKNDLSLNYPLPIVDHKKACHHTLNQ 473 D +++ W+ E PTQ Y A P +W D +YP P+V + L Sbjct: 409 DKNRQYVKRWVAEERRAPTQTALSYFDAIPRAWGLSAD--QDYPAPVVAADEGRKRALEA 466 Query: 474 Y 474 Y Sbjct: 467 Y 467 >gi|237813094|ref|YP_002897545.1| deoxyribodipyrimidine photolyase [Burkholderia pseudomallei MSHR346] gi|237504878|gb|ACQ97196.1| deoxyribodipyrimidine photolyase [Burkholderia pseudomallei MSHR346] Length = 486 Score = 243 bits (619), Expect = 7e-62, Method: Compositional matrix adjust. Identities = 163/504 (32%), Positives = 252/504 (50%), Gaps = 44/504 (8%) Query: 1 MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPE-QWRQHGISARQSH 59 M ++ +++ +VW R+DLR++D+ AL A S VI V++ R G +AR Sbjct: 1 MSSSISIAPAVVWFRDDLRVSDHPALMRAA-ESGRPVIGVYVFDERVGGRPLGGAARW-- 57 Query: 60 FIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRR 119 +++ SL + +L+ G + D + S+ ++++R+Y + Sbjct: 58 WLHGSLRALGAALAALGGTLALLRGDEHDTIV----SFAAALGAGAVYWSRRYALAARAV 113 Query: 120 DKLLEKRLQHRVIC-KSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLP 178 D ++ L + I ++F+ S+L PG ++N + Y+V++ + +A ++ R +P Sbjct: 114 DNAVQTALDAQGIAVETFNASLLFEPGDLVNADGRPYQVFSAYWRAAMR-------RGVP 166 Query: 179 VPAI----RLTGPVTPSNIPR-FFDYPFQAIDPMFP-----------IGEQNALHILRKF 222 P + RL G P+ + R ++P P GE A LR F Sbjct: 167 APPLGAPRRLNGGALPAALARQCVALDALGLEPTGPDWAGGLRDAWRFGEDAAHRRLRAF 226 Query: 223 CKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWL 282 ++ Y +RD P I TS+LSPY+ G LS RQ W+ + + ++ +L Sbjct: 227 VDSRLGGYAAERDRPGIASTSRLSPYVRFGNLSARQLWHAAADAYAHGAAT-QADLDKFL 285 Query: 283 NELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQ 342 +EL WREF + +P + + + + W D L AW++G TG+P +DA MR+ Sbjct: 286 SELGWREFGWTQLHHFPDLPR-RNLRHTLDGMPWRDDPAALAAWRRGATGYPFVDAGMRE 344 Query: 343 LNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDS 402 L GWMHNR+RM+ ASFLVK LL+DWR GE +F L+D D ASN WQW A G D+ Sbjct: 345 LWATGWMHNRVRMVCASFLVKHLLIDWRAGEAWFWDTLVDADAASNAANWQWVAGCGADA 404 Query: 403 VPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND--------LSL 454 PYFRIFNP QG++FDP G ++R W+PEL +P IH P W L Sbjct: 405 APYFRIFNPVAQGRKFDPDGAYVRRWVPELAGLPPATIHEP--WAAPGAQLAAAGVRLGE 462 Query: 455 NYPLPIVDHKKACHHTLNQYYAAK 478 YPLPIV H A L+ + A + Sbjct: 463 TYPLPIVAHDAARRRALDAFGAIR 486 >gi|76808656|ref|YP_334184.1| deoxyribodipyrimidine photolyase [Burkholderia pseudomallei 1710b] gi|254258748|ref|ZP_04949802.1| deoxyribodipyrimidine photolyase [Burkholderia pseudomallei 1710a] gi|76578109|gb|ABA47584.1| deoxyribodipyrimidine photolyase [Burkholderia pseudomallei 1710b] gi|254217437|gb|EET06821.1| deoxyribodipyrimidine photolyase [Burkholderia pseudomallei 1710a] Length = 486 Score = 243 bits (619), Expect = 7e-62, Method: Compositional matrix adjust. Identities = 160/503 (31%), Positives = 250/503 (49%), Gaps = 42/503 (8%) Query: 1 MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHF 60 M ++ +++ +VW R+DLR++D+ AL A S VI V++ E+ + + Sbjct: 1 MSSSISIAPAVVWFRDDLRVSDHPALMRAA-ESGRPVIGVYVFD-ERAGGRPLGGAARWW 58 Query: 61 IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120 ++ SL + +L+ G + D + S+ ++++R+Y + D Sbjct: 59 LHGSLRALGAALAALGGTLALLRGDEHDTIV----SFAAALGAGAVYWSRRYALAPRAVD 114 Query: 121 KLLEKRLQHRVIC-KSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPV 179 ++ L + I ++F+ S+L PG ++N + Y+V++ + +A ++ R +P Sbjct: 115 NAVQTALDAQGIAVETFNASLLFEPGDLVNADGRPYQVFSAYWRAAMR-------RGVPA 167 Query: 180 PAI----RLTGPVTPSNIPR-FFDYPFQAIDPMFP-----------IGEQNALHILRKFC 223 P + RL G P+ + R ++P P GE A LR F Sbjct: 168 PPLGAPRRLNGGALPAALARQCVALDALGLEPTGPDWAGGLRDAWRFGEDAAHRRLRAFV 227 Query: 224 KEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLN 283 ++ Y +RD P I TS+LSPY+ G LS RQ W+ + + ++ +L+ Sbjct: 228 DSRLGGYAAERDRPGIASTSRLSPYVRFGNLSARQLWHAAADAYAHGAAT-QADLDKFLS 286 Query: 284 ELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQL 343 EL WREF + +P + + + + W D L AW++G TG+P +DA MR+L Sbjct: 287 ELGWREFGWTQLHHFPDLPR-RNLRHTLDGMPWRDDPAALAAWRRGATGYPFVDAGMREL 345 Query: 344 NTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSV 403 GWMHNR+RM+ ASFLVK LL+DWR GE +F L+D D ASN WQW A G D+ Sbjct: 346 WATGWMHNRVRMVCASFLVKHLLIDWRAGEAWFWDTLVDADAASNAANWQWVAGCGADAA 405 Query: 404 PYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND--------LSLN 455 PYFRIFNP QG++FDP G ++R W+PEL +P IH P W L Sbjct: 406 PYFRIFNPVAQGRKFDPDGAYVRRWVPELAGLPPATIHEP--WAAPGAQLAAAGVRLGET 463 Query: 456 YPLPIVDHKKACHHTLNQYYAAK 478 YPLPIV H A L+ + A + Sbjct: 464 YPLPIVAHDAARRRALDAFGAIR 486 >gi|85374236|ref|YP_458298.1| hypothetical protein ELI_07045 [Erythrobacter litoralis HTCC2594] gi|84787319|gb|ABC63501.1| hypothetical protein ELI_07045 [Erythrobacter litoralis HTCC2594] Length = 463 Score = 243 bits (619), Expect = 7e-62, Method: Compositional matrix adjust. Identities = 156/477 (32%), Positives = 242/477 (50%), Gaps = 37/477 (7%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 +VWLR DLR+ DN ALY A V+AV++ E+ + H + +++ SL + K Sbjct: 6 IVWLRRDLRMADNPALYHAAKA--GPVVAVYVLDDERPKDHKLGGAARWWLHHSLESLGK 63 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130 S + + D++E L + + NR YE + + L Sbjct: 64 SFGARNSRIVLRRG----DAVEELKTVANAVGAETVHANRHYEPWW----RKAQGELAEE 115 Query: 131 VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTP 190 + K +D + L PPG + + YK+YTPF KA++Q + D +P P L+ P Sbjct: 116 LELKLYDGNYLFPPGHVTTGSGDPYKIYTPFSKAMLQEMPPRD--EVPEPET-LSSPGEW 172 Query: 191 SNIPRFFDYPFQAIDPMFPIG-------EQNALHILRKFCKEKVYYYVEQRDIPAIQGTS 243 D+ P + G ++A H + ++V Y + R++P++ TS Sbjct: 173 PASDDLGDWNLLPTKPDWAGGLRDFWTVGEDAAHERLDWWSDEVDKYDDGRNMPSVDETS 232 Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCM 303 Q+SP+L G +SP Q W+R K++ D G ++ ELIWR++ ++++ +P+ Sbjct: 233 QMSPHLHHGEISPVQIWHRFKDKRSD-------GWKTYEKELIWRDYAQNVICQFPAYPK 285 Query: 304 GKPFIPWTEKIEWNKDS--HLLQA----WKQGYTGFPIIDAAMRQLNTIGWMHNRLRMIT 357 W + W + H++Q W++G TG+PI+DA MRQL GWMHNR+RMI Sbjct: 286 ESYRDGWDADMAWRNPNRGHIIQEELKRWQKGQTGYPIVDAGMRQLWQTGWMHNRVRMIA 345 Query: 358 ASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKR 417 ASFL+K LL+DWR GE++F L+D D ASN WQW + TG DS + RI P Q ++ Sbjct: 346 ASFLIKHLLIDWRHGEKWFWDTLVDADYASNGTNWQWVSGTGVDSNMFSRIMAPLTQSEK 405 Query: 418 FDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQY 474 FD G +IR ++PEL ++P + IH P K D +YP I+ HK+ L Y Sbjct: 406 FDAAG-YIREYVPELADLPDETIHDPEEHGCKPD---DYPSKIIAHKEGRERALEAY 458 >gi|118472574|ref|YP_886913.1| deoxyribodipyrimidine photo-lyase [Mycobacterium smegmatis str. MC2 155] gi|118173861|gb|ABK74757.1| deoxyribodipyrimidine photo-lyase [Mycobacterium smegmatis str. MC2 155] Length = 452 Score = 243 bits (619), Expect = 7e-62, Method: Compositional matrix adjust. Identities = 158/468 (33%), Positives = 229/468 (48%), Gaps = 27/468 (5%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISA-RQSHFIYASLLQVQ 69 L+W R DLR D+ A+ A DA V+A ++ P R G S R+ ++Y +L ++ Sbjct: 4 LLWFRRDLRCADHPAVLDAAQG-DADVLACYVLDP---RLTGSSGDRRLAYLYGALRDLR 59 Query: 70 KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH 129 + L K +V + + + + + V+ F +E R L + L Sbjct: 60 EQLGGKLLVTRGRPEQRIPELAAAIGAASVH--VSGDFSPFGLRRDEAVRAALAD--LPG 115 Query: 130 RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189 V + L+ PG I Y+V+TPF +A + +A S P A + Sbjct: 116 DVGLYATGSPYLVTPGRITKDDGNPYRVFTPFFRAWRDHGWRAPADSGPGSARW----ID 171 Query: 190 PSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYL 249 PS +P + P D P GE A R F +E + Y R+ P + TS++S +L Sbjct: 172 PSEVPGGAEIPEPPTDLELPAGETAARAQWRAFVRESLRDYSSNRNRPDLDATSRMSAHL 231 Query: 250 SIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCM---GKP 306 G + PR L+ + GA ++L EL +R+FY ++ +P + Sbjct: 232 KFGTIHPRTMAADLERDGA------GDGAAAYLRELAFRDFYAAVLHHWPDSAWWNWNRT 285 Query: 307 FIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLL 366 F E E L AWK G TGFPI+DA MRQL G++HNR+RMI ASFLVKDL Sbjct: 286 FDA-IETDEGPDAQRLFDAWKAGMTGFPIVDAGMRQLAATGFVHNRVRMIVASFLVKDLH 344 Query: 367 VDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIR 426 + W+ G +F+ QL+DGD+A+N GWQW A G D+ PYFR+FNPT QG++FDP G +IR Sbjct: 345 LPWQWGARWFLDQLVDGDIANNQHGWQWTAGCGTDAAPYFRVFNPTKQGEKFDPDGVYIR 404 Query: 427 HWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQY 474 W+PEL + T P +YP PIVDH + L +Y Sbjct: 405 RWVPELADPAT----VPDVHRIDGSRPADYPEPIVDHAQERAEALRRY 448 >gi|195995779|ref|XP_002107758.1| hypothetical protein TRIADDRAFT_51591 [Trichoplax adhaerens] gi|190588534|gb|EDV28556.1| hypothetical protein TRIADDRAFT_51591 [Trichoplax adhaerens] Length = 513 Score = 242 bits (618), Expect = 8e-62, Method: Compositional matrix adjust. Identities = 162/506 (32%), Positives = 247/506 (48%), Gaps = 43/506 (8%) Query: 3 ATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIY 62 +++ + LVWLR DLR+ DN AL+ A + +F R+ G + ++Y Sbjct: 2 SSSKIPCTLVWLRRDLRLIDNPALFHAAKRGQLITVYIFDEDCSGKRRTGQACLW--WLY 59 Query: 63 ASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKL 122 SL ++ LSQ I + D+ L + +++NR YE E RD Sbjct: 60 HSLKSLRNQLSQWNIPLI---VKSGKDAFTILKKLLDRYNADAIYWNRCYEPFEYNRDYS 116 Query: 123 LEKRLQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPA 181 +EKR R I +++ D VL P + N Q ++++ + + SLP P Sbjct: 117 IEKRFVARKIKVETYQDRVLYEPWKVKNGKGQPFQLFPCYWNQCL---------SLPQPR 167 Query: 182 IRLTGPVTPSNIPRFFDYPFQ------------------AIDPMFPIGEQNALHILRKFC 223 P + +Y + + + GE+ A+ L++F Sbjct: 168 KPYDKPKFTVHNQGCVEYKYDDAGVWQLLASIADNDTSTRLQDFWHPGEEGAIQKLKRFM 227 Query: 224 KEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNR---LKEEFVDLLIKPKSGAFS 280 K + Y E+RD + TS LSPYL G +SP W+ ++ + P Sbjct: 228 KNSLKVYSEKRDCIWLDATSNLSPYLHFGEISPFTIWHTACFMRHSTTRSISVPLHCTKR 287 Query: 281 WLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAM 340 +L EL WREF HL+ YP + K F +++ D L AW+ G TG+PI+DA M Sbjct: 288 YLTELGWREFTCHLLFHYPDL-PEKSFKSNFHQLKLEIDEEKLHAWQNGSTGYPIVDAGM 346 Query: 341 RQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGN 400 RQL+ G+M NR+RMI ASFL+ LL+ W+ GEE+F ++L+D DLA + WQW A G Sbjct: 347 RQLSQAGFMPNRVRMIVASFLIMHLLIPWQKGEEWFWNRLVDADLAQSVCNWQWIAGCGP 406 Query: 401 DSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIH----APHSWLDKNDLSLN- 455 D PYFR+FNP IQG++FD +G ++R W+PE+ +P Y+ AP + L +++L Sbjct: 407 DVAPYFRMFNPVIQGEKFDAEGYYVRKWIPEIAKLPNSYVQKPWEAPPTMLKIANITLGK 466 Query: 456 -YPLPIVDHKKACHHTLNQYYAAKKQ 480 YP PIV+HK A L Y K++ Sbjct: 467 TYPRPIVEHKVARELALATYSQLKRK 492 >gi|254247729|ref|ZP_04941050.1| Deoxyribodipyrimidine photolyase [Burkholderia cenocepacia PC184] gi|124872505|gb|EAY64221.1| Deoxyribodipyrimidine photolyase [Burkholderia cenocepacia PC184] Length = 531 Score = 242 bits (618), Expect = 8e-62, Method: Compositional matrix adjust. Identities = 155/485 (31%), Positives = 241/485 (49%), Gaps = 33/485 (6%) Query: 1 MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHF 60 + A + + +VW R+DLR+TD AL A S ++ VFI + + Sbjct: 40 VSAKPSAAPAIVWFRDDLRVTDQPALTRAVE-SGRPLVCVFIDDTGAGAGPALGGAARWW 98 Query: 61 IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120 ++ SL ++ +L++ G + D+ ++ +++NR+Y + D Sbjct: 99 LHGSLARLDTALARHGGRLLLLRG----DAQREIERVVGDTGAAAVYWNRRYAQPQRDAD 154 Query: 121 KLLEKRLQHR-VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPV 179 L+ L+ R V +S + S+L P +L + Y+V+T + +A ++ A LP Sbjct: 155 AALKASLKARGVTVESSNGSLLNEPWEVLTGSGGPYQVFTAYWRAARRDRTVA--APLPA 212 Query: 180 PAIRLTGPVTPSNI-------------PRFFDYPFQAIDPMFPIGEQNALHILRKFCKEK 226 P R+ P + P D+ D E AL L F Sbjct: 213 PE-RIAFHPWPQAVRDRALALDALALRPHAPDWAGGLRDAWPAPDEAGALARLDTFLTTS 271 Query: 227 VYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELI 286 + Y + RD P TS+LSP+L G +SPRQ W+ ++ + A +L+EL Sbjct: 272 LAGYADARDRPDRPATSRLSPFLRFGNVSPRQVWHAVQGAANAGGAVYAAHADKFLSELG 331 Query: 287 WREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTI 346 WREF L+ +P++ F + + W D L+AW++G TG+P++DA +R+L T Sbjct: 332 WREFSYTLLYHFPALATDN-FRAQFDAMPWRDDPAALRAWQRGRTGYPLVDAGLRELWTT 390 Query: 347 GWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYF 406 GWMHNR+RM+ ASFL+K LL+DWR GE +F L+D D A+N WQW A G D+ PYF Sbjct: 391 GWMHNRVRMVVASFLIKHLLIDWRAGEAWFRDTLVDADPANNAASWQWVAGCGADAAPYF 450 Query: 407 RIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSW------LDKND--LSLNYPL 458 RIFNP QG++ DP G ++R W+PEL + IHAP W L+ L ++YP Sbjct: 451 RIFNPVAQGQKCDPDGAYVRRWVPELAGLDDASIHAP--WEASPLALEAAGVRLGIDYPA 508 Query: 459 PIVDH 463 P+V+H Sbjct: 509 PLVEH 513 >gi|188575662|ref|YP_001912591.1| photolyase [Xanthomonas oryzae pv. oryzae PXO99A] gi|188520114|gb|ACD58059.1| photolyase [Xanthomonas oryzae pv. oryzae PXO99A] Length = 472 Score = 242 bits (618), Expect = 9e-62, Method: Compositional matrix adjust. Identities = 171/488 (35%), Positives = 248/488 (50%), Gaps = 33/488 (6%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQ---WRQHGISARQSHFIYA 63 MS +VW R DLR+ DN AL AA ++ I ++I P + W S H A Sbjct: 1 MSYAIVWFRRDLRLQDNPALRAAL-DAGHHPIPLYIDAPHEEGEWTPGAASRTWRHRSLA 59 Query: 64 SLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLL 123 +L ++L G+V + DS + LD+ Q +++NR+YE RD + Sbjct: 60 ALEDALRALG-SGLVIRA------GDSAQVLDAVIAQTGAVAVYWNRKYEPATQPRDAQI 112 Query: 124 EKRLQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPF-RKALIQNLVQADL---RSLP 178 ++ L+ R I +S + ++L P + YKV+TPF R AL Q + A RSLP Sbjct: 113 KRALRERGIEAQSCNCALLFEPWQLSTQQGGPYKVFTPFWRNALTQLQLPATAPAPRSLP 172 Query: 179 -VPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIP 237 +PA+ T + + ++ Q + GE A +L F + Y + RD P Sbjct: 173 PLPAMLKTDALDTLQLVPSLNWD-QGFWEHWHAGEAGAHEMLEFFIDGGLSGYRKNRDRP 231 Query: 238 AIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAF--SWLNELIWREFYRHLM 295 GTSQLSP+L G ++P + + L+ + ++GA ++ +L WR+F HL+ Sbjct: 232 DRVGTSQLSPHLHFGEIAPWRIASALEAQRT-----ARNGAEIDGYIRQLGWRDFAYHLL 286 Query: 296 AFYPSVCMGKPFIPWTEKIEWNK-DSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLR 354 +P + P E +W K D LQAW++G TG PI+DA MRQL GWMHNR+R Sbjct: 287 HHFPDTT-NQNLNPRFEGFDWAKVDPVALQAWQRGRTGIPIVDAGMRQLWHTGWMHNRVR 345 Query: 355 MITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQ 414 MI ASFL K L + W G +F L+D DLA+N GWQW A TG D+ PYFR+FNP Q Sbjct: 346 MIVASFLCKHLRIHWIEGARWFWDTLVDADLANNTLGWQWVAGTGADAAPYFRVFNPVTQ 405 Query: 415 GKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSL---NYP-LPIVDHKKACHHT 470 ++FDP T+I W+PEL +P + AP WL L+ YP PI+ + Sbjct: 406 AEKFDPHATYITRWVPELGKLPVKERFAP--WLHPLSLARFAPEYPRTPIIGLAEGRDAA 463 Query: 471 LNQYYAAK 478 L Y ++ Sbjct: 464 LAAYSKSR 471 >gi|58581149|ref|YP_200165.1| photolyase [Xanthomonas oryzae pv. oryzae KACC10331] gi|84623072|ref|YP_450444.1| photolyase [Xanthomonas oryzae pv. oryzae MAFF 311018] gi|58425743|gb|AAW74780.1| photolyase [Xanthomonas oryzae pv. oryzae KACC10331] gi|84367012|dbj|BAE68170.1| photolyase [Xanthomonas oryzae pv. oryzae MAFF 311018] Length = 484 Score = 242 bits (618), Expect = 9e-62, Method: Compositional matrix adjust. Identities = 171/494 (34%), Positives = 250/494 (50%), Gaps = 33/494 (6%) Query: 1 MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQ---WRQHGISARQ 57 ++ MS +VW R DLR+ DN AL AA ++ I ++I P + W S Sbjct: 7 VRCRVRMSYAIVWFRRDLRLQDNPALRAAL-DAGHHPIPLYIDAPHEEGEWTPGAASRTW 65 Query: 58 SHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEV 117 H A+L ++L G+V + DS + LD+ Q +++NR+YE Sbjct: 66 RHRSLAALEDALRALG-SGLVIRA------GDSAQVLDAVIAQTGAVAVYWNRKYEPATQ 118 Query: 118 RRDKLLEKRLQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPF-RKALIQNLVQADL- 174 RD +++ L+ R I +S + ++L P + YKV+TPF R AL Q + A Sbjct: 119 PRDAQIKRALRERGIEAQSCNCALLFEPWQLSTQQGGPYKVFTPFWRNALTQLQLPATAP 178 Query: 175 --RSLP-VPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYV 231 RSLP +PA+ T + + ++ Q + GE A +L F + Y Sbjct: 179 APRSLPPLPAMLKTDALDTLQLVPSLNWD-QGFWEHWHAGEAGAHEMLEFFIDGGLSGYR 237 Query: 232 EQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAF--SWLNELIWRE 289 + RD P GTSQLSP+L G ++P + + L+ + ++GA ++ +L WR+ Sbjct: 238 KNRDRPDRVGTSQLSPHLHFGEIAPWRIASALEAQRT-----ARNGAEIDGYIRQLGWRD 292 Query: 290 FYRHLMAFYPSVCMGKPFIPWTEKIEWNK-DSHLLQAWKQGYTGFPIIDAAMRQLNTIGW 348 F HL+ +P + P E +W K D LQAW++G TG PI+DA MRQL GW Sbjct: 293 FAYHLLHHFPDTT-NQNLNPRFEGFDWAKVDPVALQAWQRGRTGIPIVDAGMRQLWHTGW 351 Query: 349 MHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRI 408 MHNR+RMI ASFL K L + W G +F L+D DLA+N GWQW A TG D+ PYFR+ Sbjct: 352 MHNRVRMIVASFLCKHLRIHWIEGARWFWDTLVDADLANNTLGWQWVAGTGADAAPYFRV 411 Query: 409 FNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSL---NYP-LPIVDHK 464 FNP Q ++FDP T+I W+PEL +P + AP WL L+ YP PI+ Sbjct: 412 FNPVTQAEKFDPHATYITRWVPELGKLPVKERFAP--WLHPLSLARFAPEYPRTPIIGLA 469 Query: 465 KACHHTLNQYYAAK 478 + L Y ++ Sbjct: 470 EGRDAALAAYSKSR 483 >gi|315444996|ref|YP_004077875.1| deoxyribodipyrimidine photo-lyase type I [Mycobacterium sp. Spyr1] gi|315263299|gb|ADU00041.1| deoxyribodipyrimidine photo-lyase type I [Mycobacterium sp. Spyr1] Length = 446 Score = 242 bits (618), Expect = 9e-62, Method: Compositional matrix adjust. Identities = 154/471 (32%), Positives = 237/471 (50%), Gaps = 37/471 (7%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 ++W R DLR+ D AL AA D V+A ++ P G +R+ ++Y +L +++ Sbjct: 1 MLWFRRDLRLADLPALVAAAE-VDGDVLACYVLDPRLKATGG--SRRLQYLYDALRDLRE 57 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130 SL + ++ + D + + + + + + +RRD+ + L Sbjct: 58 SLDGRLLITR-------GDPVSRIPVLAAAVGASSVHVSEDFTPFGMRRDEQVRDALGD- 109 Query: 131 VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTP 190 V + L+ PG + YKV+TPF A Q+ + S P A L P Sbjct: 110 VELVATGSPYLVSPGRVTKGDGSPYKVFTPFFDAWRQHGWRPPAESGPRSAHWLD-PADV 168 Query: 191 SNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLS 250 + P D P ++ P GE A ++F + + Y E R+ P + TS++S +L Sbjct: 169 AGKPGITDIPDAGVELDLPAGETAARRQWKQFVDDGLAGYAEDRNRPDLAATSRMSAHLK 228 Query: 251 IGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPW 310 G + PR L GA ++L EL +R+FY ++A +P + W Sbjct: 229 FGTIHPRTLAADLGR---------GKGAQAYLRELAFRDFYAAVVAEWPRST----WWNW 275 Query: 311 TE-----KIEWNKDSH-LLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364 +++ D+ +AWK G TGFPI+DA MRQL G++HNR+RMI ASFLVKD Sbjct: 276 NSTFDAIEVDDGPDAQRAFEAWKAGRTGFPIVDAGMRQLAETGFVHNRVRMIVASFLVKD 335 Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424 L + W+ G +F+ QL DGD+A+N GWQWAA G D+ PYFR+FNPT QGK+FDP G + Sbjct: 336 LHLPWQWGARWFLDQLTDGDMANNQHGWQWAAGCGTDAAPYFRVFNPTTQGKKFDPAGVY 395 Query: 425 IRHWLPELNNVPTQY-IHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQY 474 ++ W+ EL +V + +H LD+ D +YP PIVDH + L +Y Sbjct: 396 VKRWVEELRDVASSVDVHN----LDR-DRPADYPEPIVDHAQERAEALRRY 441 >gi|254184299|ref|ZP_04890889.1| deoxyribodipyrimidine photolyase [Burkholderia pseudomallei 1655] gi|184214830|gb|EDU11873.1| deoxyribodipyrimidine photolyase [Burkholderia pseudomallei 1655] Length = 534 Score = 241 bits (616), Expect = 1e-61, Method: Compositional matrix adjust. Identities = 159/503 (31%), Positives = 250/503 (49%), Gaps = 42/503 (8%) Query: 1 MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHF 60 + ++ +++ +VW R+DLR++D+ AL A S VI V++ E+ + + Sbjct: 49 LSSSISIAPAVVWFRDDLRVSDHPALMRAA-ESGRPVIGVYVFD-ERAGGRPLGGAARWW 106 Query: 61 IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120 ++ SL + +L+ G + D + S+ ++++R+Y + D Sbjct: 107 LHGSLRALGAALAALGGTLALLRGDEHDTIV----SFAAALGAGAVYWSRRYALAARAVD 162 Query: 121 KLLEKRLQHRVIC-KSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPV 179 ++ L + I ++F+ S+L PG ++N + Y+V++ + +A ++ R +P Sbjct: 163 NAVQTALDAQGIAVETFNASLLFEPGDLVNADGRPYQVFSAYWRAAMR-------RGVPA 215 Query: 180 PAI----RLTGPVTPSNIPR-FFDYPFQAIDPMFP-----------IGEQNALHILRKFC 223 P + RL G P+ + R ++P P GE A LR F Sbjct: 216 PPLGAPRRLNGGALPAALARQCVALDALGLEPTGPDWAGGLRDAWRFGEDAAHRRLRAFV 275 Query: 224 KEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLN 283 ++ Y +RD P I TS+LSPY+ G LS RQ W+ + + ++ +L+ Sbjct: 276 DSRLGGYAAERDRPGIASTSRLSPYVRFGNLSARQLWHAAADAYAHGAAT-QADLDKFLS 334 Query: 284 ELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQL 343 EL WREF + +P + + + + W D L AW++G TG+P +DA MR+L Sbjct: 335 ELGWREFGWTQLHHFPDLPR-RNLRHTLDGMPWRDDPAALAAWRRGATGYPFVDAGMREL 393 Query: 344 NTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSV 403 GWMHNR+RM+ ASFLVK LL+DWR GE +F L+D D ASN WQW A G D+ Sbjct: 394 WATGWMHNRVRMVCASFLVKHLLIDWRAGEAWFWDTLVDADAASNAANWQWVAGCGADAA 453 Query: 404 PYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND--------LSLN 455 PYFRIFNP QG++FDP G ++R W+PEL +P IH P W L Sbjct: 454 PYFRIFNPVAQGRKFDPDGAYVRRWVPELAGLPPATIHEP--WAAPGAQLAAAGVRLGET 511 Query: 456 YPLPIVDHKKACHHTLNQYYAAK 478 YPLPIV H A L+ + A + Sbjct: 512 YPLPIVAHDAARRRALDAFGAIR 534 >gi|209543430|ref|YP_002275659.1| Deoxyribodipyrimidine photo-lyase [Gluconacetobacter diazotrophicus PAl 5] gi|209531107|gb|ACI51044.1| Deoxyribodipyrimidine photo-lyase [Gluconacetobacter diazotrophicus PAl 5] Length = 463 Score = 241 bits (616), Expect = 1e-61, Method: Compositional matrix adjust. Identities = 155/466 (33%), Positives = 231/466 (49%), Gaps = 39/466 (8%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 +VW R D RI DN AL A + V + H A +++ ++ + + Sbjct: 10 IVWFREDFRIADNMALLEAEKRGQPTLCIVILDD-----AHLPGAAARWWLHGAIRSLDE 64 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130 +L +G+ H ++ L + +F+NR+Y+ D ++ L+ R Sbjct: 65 TL--RGMGGALHVFRGAARAV--LAEIVRKTGAGAVFWNRRYDPAGREADTAIKADLRAR 120 Query: 131 -VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALI------------QNLVQADLRSL 177 + +SF ++L P S+ + YK++T F +A + LV A Sbjct: 121 GLTVRSFPGALLHEPWSVCTRSGAPYKIFTAFWRAACALPAPFPPHPAPERLVFAP--PP 178 Query: 178 PVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIP 237 P+P +T +PR D+ D M+ GE+ A L F + Y RD P Sbjct: 179 PMPDSLITRHEQDGLLPRHPDWAGGLRD-MWSPGEEEAGDQLSDFLRHDGAGYATARDFP 237 Query: 238 AIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAF 297 + TS+LSP+L G +SP Q W+ K+ +L EL WR+F L+ F Sbjct: 238 GDEATSRLSPFLRFGHVSPAQVWHAATR---------KACPDKFLMELGWRDFAWSLLFF 288 Query: 298 YPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMIT 357 P + + P + + W D L AW++G TG+P++DA MR+L GWMHNR+RM+ Sbjct: 289 NPDLAT-RNLRPEFDAMPWRHDPGGLAAWQRGQTGYPLVDAGMRELWHTGWMHNRVRMVA 347 Query: 358 ASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKR 417 ASFLVK LL+DWR GE +F L+D D ASN WQW A TG D+ PYFR+ NP +Q ++ Sbjct: 348 ASFLVKHLLIDWREGERWFADTLVDHDPASNPMNWQWNAGTGVDAAPYFRVMNPILQSRK 407 Query: 418 FDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDH 463 FDP G +IR W+PEL ++ IHAP W ++ + YP PIVDH Sbjct: 408 FDPHGVYIRRWVPELAHLSDDAIHAP--W--ESGATHPYPAPIVDH 449 >gi|126735833|ref|ZP_01751578.1| deoxyribodipyrimidine photolyase, putative [Roseobacter sp. CCS2] gi|126715020|gb|EBA11886.1| deoxyribodipyrimidine photolyase, putative [Roseobacter sp. CCS2] Length = 472 Score = 241 bits (616), Expect = 2e-61, Method: Compositional matrix adjust. Identities = 167/484 (34%), Positives = 234/484 (48%), Gaps = 43/484 (8%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 L+W R DLR+ D++AL AAC ++D VI VFI + A + S+ + Sbjct: 7 LMWFRRDLRLGDHEALTAAC-DADRPVIPVFIYDE---LTESMGAAPKMRLGLSVADLAA 62 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130 SL++KG + D L ++++R Y+ + RD ++ L+ Sbjct: 63 SLNEKGSKLILRRGKALDV----LRELIKDTGADTVYWSRLYDPDGKTRDTDVKAALKDD 118 Query: 131 -VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189 + +SF VL P ++ YKVYTP K++ N V A +LP P T PV Sbjct: 119 GITAESFKGHVLFEPWTVETKIGGFYKVYTPMWKSVRGNDVPA---ALPTPG---TIPV- 171 Query: 190 PSNIPRFFDYPFQAIDPMF-----------PIGEQNALHILRKFCKEKVYYYVEQRDIPA 238 P + P+ D +D +GE A H L F V YV+ RD+PA Sbjct: 172 PDSWPKSDDIADWQMDAAMHRGADTLKSHCTVGEAAASHRLGAFIANHVANYVKNRDLPA 231 Query: 239 IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFY 298 + GTS LS L+ G +SPR+CW+ + D K A ++L EL+WREF HL Sbjct: 232 VDGTSGLSENLTYGEISPRKCWHSGWQALND----GKGDAETFLKELVWREFAYHLAYHT 287 Query: 299 PSVCMGKPFIPWTEKIEWNKDSHL--LQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMI 356 P + W + WN D L ++AWKQG TG +DAAMR++ G MHNR RMI Sbjct: 288 PRITTDNWKEDW-DAFPWNTDERLAEVKAWKQGRTGIRFVDAAMREMYVTGTMHNRGRMI 346 Query: 357 TASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGK 416 AS+L K LL W+IG +F L+D D SN GWQW+A +G D+ PYFR+FNP Q Sbjct: 347 VASYLTKHLLCHWKIGMNWFADCLIDWDPCSNAMGWQWSAGSGPDATPYFRVFNPVTQLD 406 Query: 417 RFDPQGTFIRHWLPELNNVPTQ-----YIHAPHSW-LDKNDLSLNYPLPIVDHKKACHHT 470 +FD +I+ W+ E P+ Y P SW + D +YP PIV Sbjct: 407 KFDKDRAYIKKWIAEGTKRPSATALSYYDMIPESWGMTAQD---SYPDPIVPADVGRSRA 463 Query: 471 LNQY 474 L+ Y Sbjct: 464 LDAY 467 >gi|84517100|ref|ZP_01004456.1| deoxyribodipyrimidine photolyase [Loktanella vestfoldensis SKA53] gi|84508995|gb|EAQ05456.1| deoxyribodipyrimidine photolyase [Loktanella vestfoldensis SKA53] Length = 471 Score = 241 bits (615), Expect = 2e-61, Method: Compositional matrix adjust. Identities = 159/479 (33%), Positives = 238/479 (49%), Gaps = 34/479 (7%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 +VW+R DLR+ D+ AL AAC S VIAV+I + + Q + +L Q K Sbjct: 7 IVWVRRDLRLADHPALTAACE-SGQPVIAVYIHDDQV---ASLGGAQKLRLDLALAQFGK 62 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ-H 129 +L+ +G + ++ L + ++++R Y RD ++ L+ Sbjct: 63 TLADRGSRLILRKGP----ALGVLRDLIRETGAGAVYWSRLYHATANDRDAAVKSALKAD 118 Query: 130 RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP-V 188 ++ +SF +L P ++ YKVYTP A+ N V LP PA ++T P V Sbjct: 119 GIVARSFTGHLLFEPWTVATKTGGFYKVYTPMWNAVRGNEVA---EPLPCPA-KITAPAV 174 Query: 189 TPSN-------IPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQG 241 P++ + R + +GE A L F ++V YV+ RD+PAI+G Sbjct: 175 WPASDALADWQLRRAMQRGGDILARHCTVGEDAARDRLGAFIADRVANYVKGRDLPAIKG 234 Query: 242 TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSV 301 TS LS L+ G +SPR CW+ + D K+ A +L EL+WREF HL P + Sbjct: 235 TSNLSENLTFGEISPRMCWHAGQRALRD----GKADAEVFLKELVWREFAYHLAHHTPRI 290 Query: 302 CMGKPFIPWTEKIEWNKD-SHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASF 360 W + WN + + AW+QG TG P +DAAMR++ G MHNR RMI AS+ Sbjct: 291 LTDNWKEDW-DAFPWNTQITPEVAAWQQGRTGIPFVDAAMREMYVTGTMHNRGRMIVASY 349 Query: 361 LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDP 420 L K LL W++G ++F L+D D ASN GWQW+A +G D+ PYFR+FNP Q +FD Sbjct: 350 LTKHLLTHWKVGLDWFADHLIDWDPASNAMGWQWSAGSGPDATPYFRVFNPVTQLDKFDK 409 Query: 421 QGTFIRHWLPELNNVP-----TQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQY 474 +++ W+ E P T + P SW + D + YP P+V ++ L+ Y Sbjct: 410 DRAYVKRWIAERYRSPQDSALTYFEMIPQSWQMRPDAA--YPDPVVTPEQGRTRALDAY 466 >gi|27380421|ref|NP_771950.1| DNA photolyase [Bradyrhizobium japonicum USDA 110] gi|27353585|dbj|BAC50575.1| DNA photolyase [Bradyrhizobium japonicum USDA 110] Length = 442 Score = 241 bits (615), Expect = 2e-61, Method: Compositional matrix adjust. Identities = 143/386 (37%), Positives = 200/386 (51%), Gaps = 41/386 (10%) Query: 121 KLLEKRLQHR-----VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLR 175 + +E+RL+ V +SF +L+PP +I N + +V+TPF + ++ + + Sbjct: 70 QAIERRLEAALAKLGVDSQSFPGDLLVPPSAIRNKEGRGLRVFTPFWRRVLS--LGDPPK 127 Query: 176 SLPVPAIRLTGPVTPSNIPRFFDYPFQAIDP--------MFPIGEQNALHILRKFCKEKV 227 LP P GP S+ R + P + GE +A LR F K Sbjct: 128 PLPAPKQLRPGPKIVSD--RLESWQLAPTKPDWAGGLRERWTPGEASARARLRDFLKTIA 185 Query: 228 YYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLL-IKPKSGAFSWLNELI 286 Y RD P GTS LSP+L G LSPRQ W+ + + + P G +L+EL Sbjct: 186 RGYAGDRDRPDRVGTSGLSPHLRFGELSPRQVWHAARFAAAEDAALGP--GIEKFLSELG 243 Query: 287 WREFYRHLMAFYPSVCMGKPFIPWTEKIE-------WNKDSHLLQAWKQGYTGFPIIDAA 339 WREF RHL+ +P + TE ++ W D +L AW++G TG+PI+DA Sbjct: 244 WREFCRHLLHDHPDLA--------TENLQTNFDGFPWQSDGKVLAAWQRGRTGYPIVDAG 295 Query: 340 MRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTG 399 +R+L G MHNR+RM+ ASFLVK LL+DWR GE +F L+D D SN WQW A G Sbjct: 296 LRELWHTGVMHNRVRMVVASFLVKHLLIDWRDGEAWFWDTLVDADAGSNPANWQWVAGCG 355 Query: 400 NDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKN------DLS 453 D+ PYFR+FNP +QG++FDP GT++R W+PEL +P + IH P L Sbjct: 356 ADAAPYFRVFNPQLQGEKFDPDGTYVRRWVPELQGLPAKLIHQPWQATPNELASAGVTLG 415 Query: 454 LNYPLPIVDHKKACHHTLNQYYAAKK 479 YP PIVDH + L+ Y +K Sbjct: 416 KTYPQPIVDHARGRERALSAYAKIRK 441 >gi|254191331|ref|ZP_04897835.1| deoxyribodipyrimidine photolyase [Burkholderia pseudomallei Pasteur 52237] gi|157939003|gb|EDO94673.1| deoxyribodipyrimidine photolyase [Burkholderia pseudomallei Pasteur 52237] Length = 534 Score = 241 bits (615), Expect = 2e-61, Method: Compositional matrix adjust. Identities = 159/503 (31%), Positives = 250/503 (49%), Gaps = 42/503 (8%) Query: 1 MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHF 60 + ++ +++ +VW R+DLR++D+ AL A S VI V++ E+ + + Sbjct: 49 LSSSISIAPAVVWFRDDLRVSDHPALMRAA-ESGRPVIGVYVFD-ERAGGRPLGGAARWW 106 Query: 61 IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120 ++ SL + +L+ G + D + S+ ++++R+Y + D Sbjct: 107 LHGSLRALGAALAALGGTLALLRGDEHDTIV----SFAAALGAGAVYWSRRYALAARAVD 162 Query: 121 KLLEKRLQHRVIC-KSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPV 179 ++ L + I ++F+ S+L PG ++N + Y+V++ + +A ++ R +P Sbjct: 163 NAVQTALDAQGIAVETFNASLLFEPGDLVNADGRPYQVFSAYWRAAMR-------RGVPA 215 Query: 180 PAI----RLTGPVTPSNIPR-FFDYPFQAIDPMFP-----------IGEQNALHILRKFC 223 P + RL G P+ + R ++P P GE A LR F Sbjct: 216 PPLGAPRRLNGGALPAALARQCVALDALGLEPTGPDWAGGLRDAWRFGEDAAHRRLRAFV 275 Query: 224 KEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLN 283 ++ Y +RD P I TS+LSPY+ G LS RQ W+ + + ++ +L+ Sbjct: 276 DSRLGGYAAERDRPGIASTSRLSPYVRFGNLSARQLWHAAADAYAHGAAT-QADLDKFLS 334 Query: 284 ELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQL 343 EL WREF + +P + + + + W D L AW++G TG+P +DA MR+L Sbjct: 335 ELGWREFGWTQLHHFPDLPR-RNLRHTLDGMPWRDDPAALAAWRRGATGYPFVDAGMREL 393 Query: 344 NTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSV 403 GWMHNR+RM+ ASFLVK LL+DWR GE +F L+D D ASN WQW A G D+ Sbjct: 394 WATGWMHNRVRMVCASFLVKHLLIDWRAGEAWFWDTLVDADAASNAANWQWVAGCGADAA 453 Query: 404 PYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND--------LSLN 455 PYFRIFNP QG++FDP G ++R W+PEL +P IH P W L Sbjct: 454 PYFRIFNPVAQGRKFDPDGAYVRRWVPELAGLPPATIHEP--WAAPGAQLAAAGVRLGET 511 Query: 456 YPLPIVDHKKACHHTLNQYYAAK 478 YPLPIV H A L+ + A + Sbjct: 512 YPLPIVAHDAARRRALDAFGAIR 534 >gi|331694491|ref|YP_004330730.1| Deoxyribodipyrimidine photo-lyase [Pseudonocardia dioxanivorans CB1190] gi|326949180|gb|AEA22877.1| Deoxyribodipyrimidine photo-lyase [Pseudonocardia dioxanivorans CB1190] Length = 462 Score = 241 bits (615), Expect = 2e-61, Method: Compositional matrix adjust. Identities = 157/478 (32%), Positives = 232/478 (48%), Gaps = 35/478 (7%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 +VW R DLR+ D + ++ A +S +A+F+ P G + R F+Y L + Sbjct: 6 VVWFRRDLRVRD-QPIFLAAADSGPAALALFVLDPALLDPSGPARRT--FLYGCLRALDD 62 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL--Q 128 +L + +V + D + + + + RRD+ +E+ L Sbjct: 63 ALGGRLLVVR-------GDPADVVPRVAAAVGAGTVHVAADFGPYGTRRDQAVEEALAVD 115 Query: 129 HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188 R + ++ + PG + ++V+TPFR+ + + + +R P Sbjct: 116 GRELVRT-GSPYAVAPGRVTKDDGDPFRVFTPFRRTWSRQRRRGPADTSAA-TVRWIDPS 173 Query: 189 TPSNIPRFFDYPF-QAIDPMFP-IGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246 + PR P + +D P GE A + F + V Y E R+ P ++GTS++S Sbjct: 174 DEGSGPRAVRIPDDEPLDAALPDPGEDAAHRQWKAFLSDAVDRYGEDRNRPDVEGTSRMS 233 Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSG-AFSWLNELIWREFYRHLMAFYPSVCM-- 303 YL G + PR + L +SG A ++ EL WREFY ++ P Sbjct: 234 VYLKWGCIHPRTMLHDLSRH--------RSGSAETYRTELAWREFYADVLFRRPDSARHN 285 Query: 304 -GKPF--IPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASF 360 + F +P + L AW++G TGFPI+DA MRQL WMHNRLRMI ASF Sbjct: 286 YDRAFDALP---SASGKRADELFAAWREGRTGFPIVDAGMRQLRAQAWMHNRLRMIVASF 342 Query: 361 LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDP 420 LVKDL + W G +FM L+DGDLASN GWQW A +G D PYFRIFNP QG+RFDP Sbjct: 343 LVKDLHLPWWWGARHFMQLLVDGDLASNQHGWQWTAGSGTDPAPYFRIFNPVTQGERFDP 402 Query: 421 QGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478 G ++R ++PEL +VP + +H P W + + YP PIVDH+ L +Y K Sbjct: 403 DGDYVRRFVPELADVPGRAVHQP--WKLPDGVPDGYPQPIVDHRAERDEALARYERVK 458 >gi|87120903|ref|ZP_01076795.1| putative photolyase [Marinomonas sp. MED121] gi|86163741|gb|EAQ65014.1| putative photolyase [Marinomonas sp. MED121] Length = 475 Score = 241 bits (615), Expect = 2e-61, Method: Compositional matrix adjust. Identities = 164/489 (33%), Positives = 259/489 (52%), Gaps = 45/489 (9%) Query: 13 WLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQKSL 72 W R DLR++DN AL AA D V+ ++I + + + +++ SL + SL Sbjct: 9 WFRQDLRLSDNPALSAAVSQGD--VLPIYILDDKNANEFAMGGASRWWLHHSLTALDASL 66 Query: 73 SQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHRVI 132 + +++ + IE LD VT + +NR YE ++RD+ +++ L+ I Sbjct: 67 TACLNLYKGEPLEVLLELIERLD-------VTHVVWNRCYEPWRMQRDEKIKQTLKEIGI 119 Query: 133 -CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVP-----AIRLTG 186 +S++ S+L P I YKV+TPF + + ++A++ P+P A+ L Sbjct: 120 QVQSYNASLLWEPWQIKKPDGTAYKVFTPFYR---KGCLKAEMPRQPLPRPDNQAVYLKD 176 Query: 187 PVTPSN-----IPRF-FDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ 240 + +P +D PF+ ++ IGE A KF +E + Y E R+IP+ Sbjct: 177 DKGQALDGLNLLPTIAWDEPFKD---LWQIGEDKAQSQFFKFLEEGLASYKEGRNIPSKP 233 Query: 241 GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPS 300 ++LSP++ G +SP Q W ++ + + +EL WREF + PS Sbjct: 234 FVTRLSPHIHFGEISPNQLWYGVQS------VADNEHVDHFCSELGWREFSYSQLFVNPS 287 Query: 301 V---CMGKPF--IPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRM 355 + + F PW E+ +KDS LL+AW+QG TG P++DA MR+L G+MHNR+RM Sbjct: 288 LPTHNLQSKFDAFPWREEDTSSKDS-LLRAWQQGKTGIPMVDAGMRELWQTGYMHNRVRM 346 Query: 356 ITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQG 415 I ASFLVK+L + W GE +F LLD DLA+N+ WQW A G D+ PYFRIFNP +QG Sbjct: 347 IVASFLVKNLRIHWHQGERWFWDTLLDADLANNSASWQWVAGCGADAAPYFRIFNPVVQG 406 Query: 416 KRFDPQGTFIRHWLPELNNVPTQYI----HAPHSWLDKNDLSLN--YPLPIVDHKKACHH 469 +RFD +G +I+ ++PE++ +P +Y+ AP L + + L YP PI+D K + Sbjct: 407 QRFDAEGDYIKKFVPEISLLPKKYLFSPWEAPELVLQEAGVKLGETYPQPIIDLKASREA 466 Query: 470 TLNQYYAAK 478 L + + K Sbjct: 467 ALEAFKSLK 475 >gi|159044861|ref|YP_001533655.1| deoxyribodipyrimidine photo-lyase [Dinoroseobacter shibae DFL 12] gi|157912621|gb|ABV94054.1| deoxyribodipyrimidine photo-lyase [Dinoroseobacter shibae DFL 12] Length = 476 Score = 241 bits (614), Expect = 2e-61, Method: Compositional matrix adjust. Identities = 164/499 (32%), Positives = 241/499 (48%), Gaps = 41/499 (8%) Query: 1 MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHF 60 M + T + + W+R DLR++DN+AL AA A VI VF+ P + A Sbjct: 1 MSSQTDRAPVIWWVRRDLRLSDNRALVAAVETG-APVIPVFLCDPIL---DSLGAAPKWR 56 Query: 61 IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120 + +L +G Y + D++E L + + ++++R Y+ ++V RD Sbjct: 57 FGLGAAALDAALRDRGSRLIYRKG----DALETLRALVSETGAETVYWSRAYDPDQVARD 112 Query: 121 KLLEKRLQHR-VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPV 179 K ++ LQ V +SF +L+ P ++ + YKVYTPF KA+ R++P Sbjct: 113 KAVKSGLQDDGVDARSFTGHLLIEPWTVETGSGGFYKVYTPFWKAVRD-------RAMPE 165 Query: 180 PAIRLTGPVTPSNIPRFFDYPFQA-----------IDPMFPIGEQNALHILRKFCKEKVY 228 P P N P + A + P IGE A L F +V Sbjct: 166 PQPAPDRIPAPDNWPESDRLDYWALGAAMNRGAAIVAPHLAIGEDAARGRLGAFIAHRVG 225 Query: 229 YYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWR 288 Y RDIP I+GTS+LS L+ G + P CW + L + K+GA ++L EL+WR Sbjct: 226 DYDRARDIPGIEGTSRLSENLTYGEIGPATCWQAGQR----ALAEGKAGAETFLKELVWR 281 Query: 289 EFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGW 348 EF HL+ P + W + W D+ + W++G TG +DAAMR++ G Sbjct: 282 EFAYHLVWHTPHLIEKNWRAEW-DHFPWRDDNADAETWRRGRTGIRFVDAAMREMYVTGT 340 Query: 349 MHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRI 408 MHNR RMI AS+L K L+ WR+G+ +F L+D D ASN GWQWAA +G D+ PYFR+ Sbjct: 341 MHNRGRMIVASYLTKHLMTHWRVGQAWFDDCLVDWDPASNAMGWQWAAGSGPDAAPYFRV 400 Query: 409 FNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHA-----PHSW-LDKNDLSLNYPLPIVD 462 FNP Q +FD ++ R ++ E P + A P SW L +D YP PIV Sbjct: 401 FNPDTQLDKFDRDQSYQRRFIAEGQGTPPEDARAYFDAIPRSWGLSPDDA---YPDPIVP 457 Query: 463 HKKACHHTLNQYYAAKKQS 481 + L+ Y A K + Sbjct: 458 LDEGRKRALDAYQARKDAA 476 >gi|134291309|ref|YP_001115078.1| deoxyribodipyrimidine photo-lyase type I [Burkholderia vietnamiensis G4] gi|134134498|gb|ABO58823.1| deoxyribodipyrimidine photo-lyase type I [Burkholderia vietnamiensis G4] Length = 505 Score = 241 bits (614), Expect = 3e-61, Method: Compositional matrix adjust. Identities = 162/500 (32%), Positives = 249/500 (49%), Gaps = 69/500 (13%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFI--ATPEQWRQHGISARQSHFIYASLLQV 68 +VW R+D R+ DN AL A ++ V+ V++ A P+ R G + R +++ SL ++ Sbjct: 14 VVWFRDDQRLADNPALTHAL-DTGHPVVCVYVHDAAPKHGRAMGGAQRW--WLHESLSKL 70 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128 +L+ G + + E + + + +NR+Y + D +++ L Sbjct: 71 DDALAAHGGSLILLRGNEH----EAITGFAAAIGAAMVVWNRRYAKAQTGTDASIKRDLI 126 Query: 129 HRVICKS-FDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187 R I S F+ +L P ++ ++V++ + +A ++ +P+PA Sbjct: 127 DRGIAVSTFNGHLLREPWTVTTREGLPFQVFSAYWRAARRDDF---FPPVPLPA------ 177 Query: 188 VTPSNIPRFFDYPFQA-----------IDPMFP-----------IGEQNALHILRKFCKE 225 PS+I RFF P A + P P GEQ A L F + Sbjct: 178 --PSHI-RFFPVPAHATPHVCTLRELELQPSAPDWAGGLRETWQCGEQAASDQLEAFLEN 234 Query: 226 KVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCW-------NRLKEEFVDLLIKPKSGA 278 + Y RD PA + TS+LSPYL G +S RQ W + ++ + + K G Sbjct: 235 SLSDYPTLRDFPAARATSRLSPYLRFGNISVRQVWYATLSAADAMRSARIVRGVDSKDGP 294 Query: 279 FS-WLNELIWREFYRHLM-AFYP--SVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFP 334 S +L+E+ WREF HL+ F P V + F + + W D+ L+ W+ G TG+P Sbjct: 295 LSKFLSEIGWREFSYHLLYHFAPLHQVNFRRQF----DSMPWRDDAKSLRKWQTGRTGYP 350 Query: 335 IIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQW 394 ++DA MR+L GWMHNR+RM+ ASFL K LL+DWR GE +F L+D D ASN WQW Sbjct: 351 LVDAGMRELWHTGWMHNRVRMVAASFLSKHLLIDWRQGEAWFWDTLVDADEASNPASWQW 410 Query: 395 AASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND--- 451 + +G D+ PYFRIFNP +Q ++FDP G + R W+PEL + +HAP W + Sbjct: 411 VSGSGADAAPYFRIFNPVLQAQKFDPHGDYTRRWVPELAQLSADTVHAP--WAASREQLQ 468 Query: 452 -----LSLNYPLPIVDHKKA 466 L +YP+PIVDH+ A Sbjct: 469 RASVTLGRSYPMPIVDHQCA 488 >gi|325914014|ref|ZP_08176370.1| deoxyribodipyrimidine photo-lyase type I [Xanthomonas vesicatoria ATCC 35937] gi|325539783|gb|EGD11423.1| deoxyribodipyrimidine photo-lyase type I [Xanthomonas vesicatoria ATCC 35937] Length = 472 Score = 240 bits (613), Expect = 4e-61, Method: Compositional matrix adjust. Identities = 174/484 (35%), Positives = 245/484 (50%), Gaps = 33/484 (6%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQ---WRQHGISARQSHFIYA 63 MS +VW R DLR+ DN AL AA ++ I ++I P + W S H A Sbjct: 1 MSYAIVWFRRDLRLQDNPALRAAL-DAGHDPIPLYIDAPHEEGEWAPGAASRSWRHRSLA 59 Query: 64 SLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLL 123 +L ++L G+V + DS + LD Q +++NR+YE RD + Sbjct: 60 ALDDTLRALG-SGLVIRA------GDSAQVLDEVIAQTGAVAVYWNRKYEPATQPRDAQI 112 Query: 124 EKRLQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPF-RKALIQNLVQADL---RSLP 178 ++ L+ R I +S + ++L P + YKV+TPF R AL Q + A + RSLP Sbjct: 113 KRNLRERGIEVQSCNAALLFEPWQLSTQQGGPYKVFTPFWRNALTQLQLPAAVPAPRSLP 172 Query: 179 -VPAIRLTGPVTP-SNIPRF-FDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRD 235 +PA T + + +PR +D+ F + GE A +L F + Y E RD Sbjct: 173 PLPATLETVALESLALLPRLDWDHGFWE---HWQPGEAGAHEMLEIFIDGALDGYRENRD 229 Query: 236 IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLM 295 P GTSQLSP+L G ++P + + L+ + G ++ +L WR+F HL+ Sbjct: 230 RPDRVGTSQLSPHLHFGEIAPWRIASTLEAQRNARNAAEIDG---YIRQLGWRDFSYHLL 286 Query: 296 AFYPSVCMGKPFIPWTEKIEWNK-DSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLR 354 +P + P E +W K D LQAW++G TG PI+DA MRQL GWMHNR+R Sbjct: 287 HHFPDTT-NQNLNPRFEGFDWAKADPVALQAWQRGRTGIPIVDAGMRQLWHTGWMHNRVR 345 Query: 355 MITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQ 414 MI AS L K L V W G +F L+D DLA+N GWQW A TG D+ PYFR+FNP Q Sbjct: 346 MIVASLLCKHLRVHWLDGARWFWDTLVDADLANNTMGWQWVAGTGADAAPYFRVFNPVTQ 405 Query: 415 GKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDK---NDLSLNYPL-PIVDHKKACHHT 470 ++FDPQ T+I W+PEL + + AP WL L+ YP PI+ + Sbjct: 406 AEKFDPQATYITRWVPELGKLAVKERFAP--WLHPLSLARLAPEYPRSPIIGLAEGRDAA 463 Query: 471 LNQY 474 L Y Sbjct: 464 LAAY 467 >gi|332662341|ref|YP_004445129.1| Deoxyribodipyrimidine photo-lyase [Haliscomenobacter hydrossis DSM 1100] gi|332331155|gb|AEE48256.1| Deoxyribodipyrimidine photo-lyase [Haliscomenobacter hydrossis DSM 1100] Length = 449 Score = 240 bits (612), Expect = 4e-61, Method: Compositional matrix adjust. Identities = 161/489 (32%), Positives = 240/489 (49%), Gaps = 61/489 (12%) Query: 8 SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQ-HGISARQSHFIYASLL 66 ++ L W R DLR+ DN LY A S+ V+ +FI E + + F++ + Sbjct: 3 AITLFWFRRDLRLQDNAGLYHAL-KSNFPVLPLFIFDTEILDELDDPEDARVAFLHQRIT 61 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 ++Q L G + E L Y V +++ N YE ++RD+ ++ Sbjct: 62 ELQAELEHLGSSMLVRYGKPAEVWPEILQDYL----VAEVYTNHDYEPRAIQRDEAVQNL 117 Query: 127 L-QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIR-- 183 L Q + SF D V+ + + Y V+TP+ + + +N + + + ++ I Sbjct: 118 LAQQNIPYFSFKDQVIFEKLEVTKLDGKPYTVFTPYSR-MWKNCLASQMETIQENGIEQV 176 Query: 184 LTGPVTPSNIPRFFDYPFQAIDPMFP----IGEQNA------LHILRKFCKEKVYYYVEQ 233 ++ + P +++ +Q P P +G Q + + R K+ Y + Sbjct: 177 ISFFLKPYPTEKYYPNFWQTAPPPLPALSAMGFQPSSIAIPPTTVSRGLIKQ----YDKT 232 Query: 234 RDIPAIQGTSQLSPYLSIGVLSPRQCWNR---LKEEFVDLLIKPKSGAFSWLNELIWREF 290 RD P + GTS+L + G +S R+ R L E F LNELIWR+F Sbjct: 233 RDFPYLNGTSRLGIHFRFGTISIREKARRALELNETF--------------LNELIWRDF 278 Query: 291 YRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMH 350 Y ++ +P V + F P ++IEW D + W G TG+PI+DA +R+LN G+MH Sbjct: 279 YAQILFNFPHVAQ-RSFRPEYDQIEWRNDEDEFEKWCAGKTGYPIVDAGLRELNATGYMH 337 Query: 351 NRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFN 410 NR+RMITASFL K LL+DWR GE YF +LLD DLASNNGGWQWAA G D+ PYFR+F+ Sbjct: 338 NRVRMITASFLTKHLLIDWRWGEAYFAKKLLDYDLASNNGGWQWAAGCGTDAAPYFRVFS 397 Query: 411 PTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHT 470 P Q ++FDP+ ++R W+PE + YP PIVDHK A Sbjct: 398 PAAQQEKFDPEYKYVRKWVPEYG-------------------TDAYPKPIVDHKFARERC 438 Query: 471 LNQYYAAKK 479 L Y AA K Sbjct: 439 LEVYKAALK 447 >gi|259416145|ref|ZP_05740065.1| deoxyribodipyrimidine photo-lyase type I [Silicibacter sp. TrichCH4B] gi|259347584|gb|EEW59361.1| deoxyribodipyrimidine photo-lyase type I [Silicibacter sp. TrichCH4B] Length = 474 Score = 240 bits (612), Expect = 5e-61, Method: Compositional matrix adjust. Identities = 158/482 (32%), Positives = 240/482 (49%), Gaps = 30/482 (6%) Query: 13 WLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQKSL 72 W+R DLR+ DN AL AA +I ++I P+ + A + L + K+L Sbjct: 10 WIRRDLRLRDNPALTAALETG-GPIIPLYIHDPQD---EALGAAPKFRLGLGLERFAKTL 65 Query: 73 SQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR-V 131 G + D++E L + + ++R Y+ ++RD ++++L+ + Sbjct: 66 EGHGSRLTLRKG----DALEVLREVIKESGAGHVVWSRLYDPEAIKRDTEIKEQLKAADI 121 Query: 132 ICKSFDDSVLLPPGSILNHALQMYKVYTPFRKAL----IQNLVQADLRSLPVP-AIRLTG 186 KS ++ P ++ MYKVYTPF KA+ ++ L+ A +LP P A T Sbjct: 122 TVKSTGGRLMFEPWTVETKDGGMYKVYTPFWKAVRDREVEGLIDAPA-NLPKPDAWPATD 180 Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246 + NI + + +G+ AL L +F +E+V Y RD P+ TS+LS Sbjct: 181 ELADYNISAAMRRGAEIVAGYCRVGDDAALEQLDRFLEERVQTYKADRDFPSRAATSELS 240 Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP 306 L+ G +SP + W+ + D K GA +L E++WREF HLM P + Sbjct: 241 ENLAWGEISPHRMWHLGAQAMRD----GKQGAEHFLKEVVWREFAYHLMYHSPHILTRNW 296 Query: 307 FIPWTEKIEWNKD-SHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365 W + W D L W+QG TG+ +DAAMR+L G MHNR RMI ASFL K L Sbjct: 297 REEW-DGFPWQDDPGEALLRWQQGQTGYDFVDAAMRELYVTGKMHNRARMIVASFLTKHL 355 Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425 ++ W+ G ++F L+D D ASN GWQW A +G D+ P+FRIFNP Q ++FDP+G ++ Sbjct: 356 MIHWKFGMQWFEDCLVDWDPASNAMGWQWVAGSGPDAAPFFRIFNPDGQLEKFDPKGRYV 415 Query: 426 RHWLPELNNVPTQ-----YIHAPHSW-LDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479 R+WL E + P Q + P SW L D PI+D K+ L Y+ ++ Sbjct: 416 RNWLAEGQSDPPQTATDFFAATPLSWELSAKDTRAR---PIIDLKRGRERALEAYHDSRD 472 Query: 480 QS 481 +S Sbjct: 473 KS 474 >gi|260220093|emb|CBA27286.1| Deoxyribodipyrimidine photo-lyase [Curvibacter putative symbiont of Hydra magnipapillata] Length = 534 Score = 239 bits (611), Expect = 6e-61, Method: Compositional matrix adjust. Identities = 164/469 (34%), Positives = 234/469 (49%), Gaps = 52/469 (11%) Query: 8 SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67 S LVW R DLR DN AL A D V VF+ + R+ FI S+ Sbjct: 6 STGLVWFRRDLRTEDNAALSRALACCDT-VYCVFVYDTAILDKLPRQDRRVEFIQESVTA 64 Query: 68 VQKSLSQKGIVFQYHQCSNF----DDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLL 123 ++ SL + H D + + Q + +F R YE V RD + Sbjct: 65 LESSLQ----ALRGHASRTLITLHDVAHSAIPELAKQLQANAVFVARDYEPAAVTRDTAV 120 Query: 124 EKRL----QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPV 179 +++L + V+ K D V+ +L + Y V+TP+ +A + A + S V Sbjct: 121 QQQLLAEGKQLVLVK---DQVIFEDREVLTQTGKPYGVFTPYHRAWL-----ARIGSELV 172 Query: 180 P--------AIRLTGP-VTPSNIPRFFDYPFQAIDPM---FPIGEQNALHILRKFCKEKV 227 P A+ P +P D F+A + G +L+ F ++ Sbjct: 173 PGHDVCRGHAVLAAAPDALAKPLPSLADLGFEATNLRALGMHGGSAAGEAMLQDFLG-RM 231 Query: 228 YYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIK----PKSGAFSWLN 283 Y E R+ P+++G S L +L G +S R+ V+L +K GA WL Sbjct: 232 DRYSEARNFPSVKGPSYLGVHLRFGTVSIRK--------LVNLALKRVRTGSEGASVWLA 283 Query: 284 ELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSH---LLQAWKQGYTGFPIIDAAM 340 EL WR+FY ++A +P V + F P + I W + L +AW +G TG+PI+DAAM Sbjct: 284 ELAWRDFYFQILANFPHVAT-QAFKPEYDAIAWEQGEEAEALFEAWCEGKTGYPIVDAAM 342 Query: 341 RQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGN 400 QLN G+MHNRLRM+ SFLVK L +DWR GE+YF +L D DL++NNGGWQW AS+G Sbjct: 343 AQLNQTGYMHNRLRMVAGSFLVKHLGLDWRWGEKYFALKLNDFDLSANNGGWQWVASSGC 402 Query: 401 DSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDK 449 D+ PYFRIFNP Q ++FD QG FI+ +LP+L ++ + IHAP WL K Sbjct: 403 DAQPYFRIFNPVTQSEKFDGQGKFIKRYLPQLADLSDKAIHAP--WLAK 449 >gi|146297827|ref|YP_001192418.1| deoxyribodipyrimidine photo-lyase [Flavobacterium johnsoniae UW101] gi|146152245|gb|ABQ03099.1| Deoxyribodipyrimidine photo-lyase [Flavobacterium johnsoniae UW101] Length = 431 Score = 239 bits (611), Expect = 6e-61, Method: Compositional matrix adjust. Identities = 158/479 (32%), Positives = 236/479 (49%), Gaps = 58/479 (12%) Query: 5 TAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYAS 64 T V W R DLR+ DN L+ A SD VI +FI + + + FIY S Sbjct: 2 TKQKVSFFWFRRDLRLEDNTGLFHALQ-SDLPVIPLFIFDEDILDNLPKNDARVSFIYDS 60 Query: 65 LLQVQKSLS--QKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKL 122 L ++ L+ + I+ + + + S+ L + +Q +F+N+ YE ++RD Sbjct: 61 LQKINNELNTFESSILIKKGKTTAVWKSL--LSEFDIQN----VFFNKDYEPFAIKRDTA 114 Query: 123 LEKRL-QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPA 181 + L ++ V C SF D V+ I Y VYTP++ ++ L ++P Sbjct: 115 ICSLLKENNVECFSFKDHVIFEEKEITKADGSPYTVYTPYKNKWLEKY--HFLGTVP--- 169 Query: 182 IRLTGPVTPSNIPRF-FDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ 240 SN + F +P + IG + + + ++ Y E RD PA+ Sbjct: 170 -ECDSSSMHSNFAKTKFSFP-----DLTEIGFKRSTIKVLPHNLTQIANYKETRDFPALD 223 Query: 241 GTSQLSPYLSIGVLSPRQC--WNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFY 298 TS LSP+L G +S R+ W K + ++L+ELIWREF+ ++ + Sbjct: 224 STSYLSPHLRFGTVSIRKLVNWANRKNQ-------------TFLSELIWREFFIQILFSF 270 Query: 299 PSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITA 358 P+ C+ F + I+W + + W G TG+P++DA MRQLN G+MHNR+RM+ A Sbjct: 271 PN-CVNHNFKSAYDGIQWRNNEEDFKRWCSGNTGYPMVDAGMRQLNETGYMHNRVRMVVA 329 Query: 359 SFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRF 418 SFL K LL++W+ GE YF +LLD +LASN G WQWAA TG D+ PYFR+FNP IQ K+F Sbjct: 330 SFLCKHLLINWQWGEAYFAEKLLDFELASNVGNWQWAAGTGCDAAPYFRVFNPEIQQKKF 389 Query: 419 DPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477 D +G +IR W+PE + Y P+VDH A T+ Y A Sbjct: 390 DEKGEYIRKWIPEFD--------------------FGYAEPMVDHAFARDRTIATYKAG 428 >gi|83953690|ref|ZP_00962411.1| deoxyribodipyrimidine photolyase [Sulfitobacter sp. NAS-14.1] gi|83841635|gb|EAP80804.1| deoxyribodipyrimidine photolyase [Sulfitobacter sp. NAS-14.1] Length = 473 Score = 239 bits (610), Expect = 7e-61, Method: Compositional matrix adjust. Identities = 168/486 (34%), Positives = 238/486 (48%), Gaps = 47/486 (9%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFI--------ATPEQWRQH-GISARQSHFI 61 L+W R DLR++D+ AL AA N+ VI VFI +WR GI A Sbjct: 8 LLWYRRDLRLSDHPALSAAA-NAGRPVIPVFIKDKSVDALGAAPKWRLGLGIGA------ 60 Query: 62 YASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD- 120 L + +S + I+ + D++E L + + ++++R Y+ + V+RD Sbjct: 61 ---LADSLEGVSSRLILRE-------GDALEVLQALIKETGAGTVYWSRLYDPDSVKRDS 110 Query: 121 KLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRS---L 177 K+ E + KSF V+ P ++ A YKVYTPF + V+ L + L Sbjct: 111 KIKETLCNDGIEAKSFGGHVMFEPWTVETKAGDCYKVYTPFWNNVKTRDVEPPLSAPSDL 170 Query: 178 PVP-AIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDI 236 P P + + + ++ D + P +GE+ A L F V Y + RDI Sbjct: 171 PAPESWPDSDALDGWDLGAAMDRGADVVRPFVCLGEKAAQSRLGAFMAHGVADYKQTRDI 230 Query: 237 PAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMA 296 P GTS LS LS+G +SP QCW+ + D K GA ++L EL+WREF HLM Sbjct: 231 PGTDGTSNLSENLSLGEISPHQCWHAAQRALHD----GKQGAETFLKELVWREFAYHLMH 286 Query: 297 FYPSVCMGKPFIPWTEKIEWNKDSHL--LQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLR 354 P + W + WN+D ++AWKQG TG P +DAAMR+L G MHNR R Sbjct: 287 HTPRMLTDNWREEW-DAFPWNEDERRAEVKAWKQGRTGEPFVDAAMRELYVTGRMHNRGR 345 Query: 355 MITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQ 414 MI AS+L K L+ WRIG+++F L+D D ASN GWQWAA +G D+ PYFR+FNP Q Sbjct: 346 MIVASYLTKHLMCHWRIGQKWFEHCLIDWDPASNAMGWQWAAGSGPDASPYFRVFNPETQ 405 Query: 415 GKRFDPQGTFIRHWLPELNNVPTQYIHA-----PHSW-LDKNDLSLNYPLPIVDHKKACH 468 +FD + W+ E P + A P SW L +D +YP I+ + Sbjct: 406 LDKFDKNRDYASRWIAEGRANPHKDALAFFDAIPRSWPLSADD---DYPEKIIALDEGRE 462 Query: 469 HTLNQY 474 L Y Sbjct: 463 RALETY 468 >gi|117924446|ref|YP_865063.1| deoxyribodipyrimidine photo-lyase type I [Magnetococcus sp. MC-1] gi|117608202|gb|ABK43657.1| deoxyribodipyrimidine photo-lyase type I [Magnetococcus sp. MC-1] Length = 476 Score = 239 bits (610), Expect = 7e-61, Method: Compositional matrix adjust. Identities = 162/476 (34%), Positives = 239/476 (50%), Gaps = 49/476 (10%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 +VW R DLR++DN AL AA + +V+ V+I Q G + R +Q+ Sbjct: 9 IVWFRRDLRLSDNPALLAA--TAMGQVLPVYIHENNQQEGGGGAWRWG---------LQQ 57 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130 +L+ Q C D L T +++NR Y ++RD+ +++ L R Sbjct: 58 ALAALNADLQGKLCCYVGDPARLLPEVAHAVGATGVYWNRLYTPQAIKRDRAIKQSLIER 117 Query: 131 VI-CKSFDDSVLLPPGSILNHALQMYKVYTPF--RKALIQNLVQADLRSLPVPAIRLTGP 187 + +SF+ S+L P +L YKV+TP+ R L+Q++ + + + P Sbjct: 118 GLQVRSFNGSLLWEPWQVLKADKTPYKVFTPYYRRGCLVQDVPRQPMDAPPT-------- 169 Query: 188 VTPSNIPRFFDY-PFQAIDPM--------------FPIGEQNALHILRKFCKEKVYYYVE 232 VT + +P QA+D + + +GE+ A F + Y + Sbjct: 170 VTWATLPAAAPAPSMQALDALLLGDVSWHKKWHGIWSMGEEAAQTRFEHFLSHGLACYDQ 229 Query: 233 QRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYR 292 RD P TS+LS L G+LSP Q W L+ D + + +EL WREF Sbjct: 230 GRDFPGRDCTSRLSTALQYGLLSPNQVWYGLEHAKAD-----EHSVDKFRSELAWREFAY 284 Query: 293 HLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNR 352 + + +PS+ K F P + W +D L W+ G TG PI+DA MR+L G MHNR Sbjct: 285 YQLFHFPSLPH-KNFQPKFDHFPWLEDEVALGRWQTGQTGIPIVDAGMRELWQTGVMHNR 343 Query: 353 LRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPT 412 +RM+ SFLVK+LL+DWR G +F L+D DLA N+ WQW A G D+ PYFRIFNP Sbjct: 344 VRMLVGSFLVKNLLLDWRAGAAWFKDCLVDYDLAINSASWQWVAGCGADAAPYFRIFNPV 403 Query: 413 IQGKRFDPQGTFIRHWLPELNNVPTQYIH----APHSWLDKNDLSL--NYPLPIVD 462 QG++FD GT+ R ++PEL N+P QY+ AP S L + + L +YP P+VD Sbjct: 404 TQGEKFDRNGTYTRRFVPELANLPDQYLFKPWMAPASILRQAGVRLGQDYPEPLVD 459 >gi|300778354|ref|ZP_07088212.1| possible deoxyribodipyrimidine photo-lyase [Chryseobacterium gleum ATCC 35910] gi|300503864|gb|EFK35004.1| possible deoxyribodipyrimidine photo-lyase [Chryseobacterium gleum ATCC 35910] Length = 431 Score = 239 bits (610), Expect = 7e-61, Method: Compositional matrix adjust. Identities = 162/475 (34%), Positives = 231/475 (48%), Gaps = 56/475 (11%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFI-ATPEQWRQHGISARQSHFIYASLLQ 67 + L WLR DLR+ DN L+ A SDA V+ VFI T + R+ +I+ +L Sbjct: 5 ITLFWLRRDLRLEDNIGLHHALQ-SDAPVMPVFIFDTDILGKLEDKEDRRVDYIHQALTD 63 Query: 68 VQKSLSQKGIVFQYHQCSN--FDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125 + SL + YH N + IE + + +F NR YE + RDK + Sbjct: 64 INISLKK------YHSKLNTYYGKPIEIFRKLSEEYDIESVFCNRDYEPQAIERDKEIYY 117 Query: 126 RLQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL 184 + I K+ D V+ I+ Y VYTP+ K + L +++ + Sbjct: 118 FFTEKKIPFKACKDQVIFDKDQIVKKDGTPYTVYTPYAKKWRELLTPEHYQAVEL----- 172 Query: 185 TGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEK--VYYYVEQRDIPAIQGT 242 N F + I IG + K + + Y + RD PA+Q T Sbjct: 173 -------NFKNLFSQEYSDILTSKEIGFKKTDFKFSKPVLDASIIDDYDQYRDYPALQHT 225 Query: 243 SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVC 302 +QL L G +S R+C V +K + WL+ELIWREF+ ++ +P V Sbjct: 226 TQLGIALRFGTISIRKC--------VAFALKHNA---VWLSELIWREFFMQILYHFPRV- 273 Query: 303 MGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLV 362 + + F + I+W + + W +G TG+PI+DA MR+LN G+MHNR+RMI ASFL Sbjct: 274 VHQSFKERYDDIQWRNNEKEFRHWCEGTTGYPIVDAGMRELNQTGYMHNRVRMIVASFLC 333 Query: 363 KDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQG 422 K LL+DWR GE YF S+L D DLA+NNG WQWAA +G D+ PYFR+FNPT Q ++FD Sbjct: 334 KHLLIDWRWGEAYFASKLNDYDLAANNGNWQWAAGSGCDAAPYFRVFNPTTQTEKFDKDL 393 Query: 423 TFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477 +I+ WLPE N + YP PIV+H A L++Y A Sbjct: 394 QYIKKWLPEWN-------------------TPEYPSPIVEHTFARERALSEYKKA 429 >gi|119503382|ref|ZP_01625466.1| DNA photolyase [marine gamma proteobacterium HTCC2080] gi|119461028|gb|EAW42119.1| DNA photolyase [marine gamma proteobacterium HTCC2080] Length = 481 Score = 239 bits (610), Expect = 7e-61, Method: Compositional matrix adjust. Identities = 164/491 (33%), Positives = 231/491 (47%), Gaps = 37/491 (7%) Query: 8 SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFI---ATPEQWRQHGISARQSHFIYAS 64 + L W R+DLR+ D L AA VI VF+ A W G S H S Sbjct: 3 NASLYWFRHDLRLADLPGLIAAAKA--GTVIPVFVWDEALGGDWSLGGASQWWLHHSLQS 60 Query: 65 LLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLE 124 L L + I+ + +E + +F +RQY+ + ++ Sbjct: 61 LAADLNGLGSRLILRRGETSKVIAKLLE-------ETGAQNVFASRQYQPWAADTENAVK 113 Query: 125 KRLQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQAD-----LRSLP 178 + K + ++L P +I +KV+TPF +A ++ L + P Sbjct: 114 AVTESAGGDFKRYPGTLLFEPENIRTGGGTPFKVFTPFWRAALKQPAPPQPQPVPLLTSP 173 Query: 179 VPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPA 238 + T P+ ++ + ++ GE A LR F V Y RD PA Sbjct: 174 DEWPQSDALNTWQLCPKTPNWA-TGWEELWSPGEAGASGALRTFLDSHVDSYGNGRDFPA 232 Query: 239 IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAF--SWLNELIWREFYRHLMA 296 TS+LSPYL G +SPRQ W + P G+ +L+E+ WREF HL+A Sbjct: 233 QPNTSRLSPYLKFGEISPRQIWWTAQNTKQS---NPDEGSSIDKFLSEIGWREFCNHLVA 289 Query: 297 FYPSVCMGKPFIPWTEKIE---WNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRL 353 +P++ P W K E W L AW+QG TG+PIIDA MR+L G+MHNR+ Sbjct: 290 QFPAM----PDKAWNPKFEYFPWQSHQRNLSAWQQGNTGYPIIDAGMRELWQTGFMHNRV 345 Query: 354 RMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTI 413 RM+ ASFL K LL+ WR+GE++F LLD DLASN WQW +G D+ PYFRIFNP Sbjct: 346 RMVVASFLTKHLLMHWRVGEQWFWDCLLDADLASNACSWQWVGGSGADASPYFRIFNPIA 405 Query: 414 QGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKN------DLSLNYPLPIVDHKKAC 467 QG++FD G + R W+PEL +P +Y++ P + +L YP PIVDH+ A Sbjct: 406 QGEKFDKAGMYTRRWVPELAELPDKYLYKPWEAPELTLKAAGVELGTTYPNPIVDHRTAR 465 Query: 468 HHTLNQYYAAK 478 L Y K Sbjct: 466 ESALEAYATLK 476 >gi|149202510|ref|ZP_01879482.1| Deoxyribodipyrimidine photolyase [Roseovarius sp. TM1035] gi|149143792|gb|EDM31826.1| Deoxyribodipyrimidine photolyase [Roseovarius sp. TM1035] Length = 473 Score = 239 bits (609), Expect = 9e-61, Method: Compositional matrix adjust. Identities = 163/487 (33%), Positives = 235/487 (48%), Gaps = 33/487 (6%) Query: 5 TAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYAS 64 T ++ +VWLR DLR+ D+ AL AA A VI VFI + A + S Sbjct: 2 TDIAPSIVWLRRDLRLADHPALCAALAGGGA-VIPVFIHDESV---EALGAAPKWRLGLS 57 Query: 65 LLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLE 124 L + + L+ G + + D L + + + ++R Y+ + RDK ++ Sbjct: 58 LASLARDLAACGSRLILRRGAALDV----LRALVAETGAGAVHWSRLYDPQSIARDKAVK 113 Query: 125 KRLQHR-VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRS---LPVP 180 L+ V +S V+ P ++ Y+VY+P +A+ V L + +P P Sbjct: 114 SALREAGVDAQSHPGHVMFEPWTVETKTGGFYRVYSPMWRAVKDRDVAVPLTAPGQIPAP 173 Query: 181 AIRLTGPVTPS-NIPRFFDYPFQAIDPMFP---IGEQNALHILRKFCKEKVYYYVEQRDI 236 + P + S + + ++ D P +GE A+ L F + Y + R+ Sbjct: 174 KVW---PASDSLDDWQMGAAMYRGADVCLPYQRVGEAAAMERLHAFADGAIAEYQDARNF 230 Query: 237 PAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMA 296 PA+ TS LS L+ G +SPRQCW+ + L GA +WL EL+WREF HLM Sbjct: 231 PAVDATSALSENLTYGEISPRQCWHAGQRA----LHGGAKGAETWLKELVWREFAYHLMY 286 Query: 297 FYPSVCMGKPFIPWTEKIEWNKDSHLLQ--AWKQGYTGFPIIDAAMRQLNTIGWMHNRLR 354 P + G W + W+ D+ + AWKQG TG P +DAAMR++ G MHNR R Sbjct: 287 HTPHILSGNWRTDW-DAFPWSTDADHPEVIAWKQGRTGEPFVDAAMREMYVTGKMHNRAR 345 Query: 355 MITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQ 414 MI AS+L K L+ W+IG ++F L D D ASN GWQWAA G D+ PYFR+FNP Q Sbjct: 346 MIVASYLTKHLMTHWKIGLDWFAECLTDWDPASNAMGWQWAAGCGPDAAPYFRVFNPETQ 405 Query: 415 GKRFDPQGTFIRHWLPELNNVPT----QYIHA-PHSWLDKNDLSLNYPLPIVDHKKACHH 469 +FD G + R W+ E P Y A P +W + D S+ YP IVD + Sbjct: 406 LDKFDRGGAYTRRWIAEGQRTPPATALDYFKAVPRAW--QLDPSMLYPGRIVDLSQGRQR 463 Query: 470 TLNQYYA 476 LN Y A Sbjct: 464 ALNAYEA 470 >gi|289670152|ref|ZP_06491227.1| photolyase [Xanthomonas campestris pv. musacearum NCPPB4381] Length = 484 Score = 239 bits (609), Expect = 1e-60, Method: Compositional matrix adjust. Identities = 167/491 (34%), Positives = 244/491 (49%), Gaps = 27/491 (5%) Query: 1 MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHF 60 ++ MS +VW R DLR+ DN AL AA ++ I ++I P + + + Sbjct: 7 VRCRVRMSYAIVWFRRDLRLEDNPALRAAL-DAGHHPIPLYIDAPHEEGEWTPGVASRTW 65 Query: 61 IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120 + SL + +L +G DS + LD Q +++NR+YE RD Sbjct: 66 RHRSLAALDDALRARGSGL----VIRAGDSAQVLDEVIAQTGAVAVYWNRKYEPATQPRD 121 Query: 121 KLLEKRLQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPF-RKALIQNLVQADL---R 175 +++ L+ R I +S + ++L P + YK++TPF R AL Q + A + R Sbjct: 122 AQIKRALRERGIEAQSCNSALLFEPWQLSTQQGGPYKMFTPFWRNALTQLHLPAAVPAPR 181 Query: 176 SLP-VPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQR 234 SLP +PA T + + ++ Q GE A +L F + Y E R Sbjct: 182 SLPPLPAALKTDALDTLQLVPSLNWD-QGFWEHGQPGEAGAHEMLEIFIDGALSGYRENR 240 Query: 235 DIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAF--SWLNELIWREFYR 292 D P GTSQLSP+L G ++P + + L+ ++GA ++ +L WR+F Sbjct: 241 DRPDRVGTSQLSPHLHFGEIAPWRIASTLEARRT-----ARNGAEIDGYIRQLGWRDFAY 295 Query: 293 HLMAFYPSVCMGKPFIPWTEKIEWNK-DSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHN 351 HL+ +P + P E +W K D LQAW++G TG PI+DA MRQL GWMHN Sbjct: 296 HLLHHFPDTT-NQNLNPRFEGFDWTKVDPVALQAWQRGRTGIPIVDAGMRQLWHTGWMHN 354 Query: 352 RLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNP 411 R+RMI ASFL K L + W G +F L+D DLA+N GWQW A TG D+ PYFR+FNP Sbjct: 355 RVRMIVASFLCKHLRIHWIEGARWFWDTLVDADLANNTLGWQWVAGTGADAAPYFRVFNP 414 Query: 412 TIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSL---NYP-LPIVDHKKAC 467 Q ++FDPQ T+I W+PEL + + AP WL L+ YP PI+ + Sbjct: 415 VTQAEKFDPQATYITRWVPELGKLAVKERFAP--WLHPLSLARFASEYPRAPIIGLAEGR 472 Query: 468 HHTLNQYYAAK 478 L Y ++ Sbjct: 473 DAALAAYAKSR 483 >gi|325285379|ref|YP_004261169.1| Deoxyribodipyrimidine photo-lyase [Cellulophaga lytica DSM 7489] gi|324320833|gb|ADY28298.1| Deoxyribodipyrimidine photo-lyase [Cellulophaga lytica DSM 7489] Length = 429 Score = 238 bits (608), Expect = 1e-60, Method: Compositional matrix adjust. Identities = 154/470 (32%), Positives = 232/470 (49%), Gaps = 55/470 (11%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 + + W R DLRI DN AL A + + V+ VFI + + FI+ ++ + Sbjct: 5 ISVFWFRRDLRIEDNTALCNALKSGNP-VLPVFIFDENILNELDADDARVTFIHKTISAI 63 Query: 69 QKSLSQ--KGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 +L + G++ C + + W V ++F+N+ YE RD+ + Sbjct: 64 NLTLKEYNSGVL-----CLHTTPELAW-KKIVSTYNVERVFFNKDYEPYARERDQKITSF 117 Query: 127 LQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185 L + I KS DSV+ +L + Y VYTP++ + DL + Sbjct: 118 LNDKSIKVKSNKDSVIFEENDVLKNDGDPYTVYTPYKNKWLSKFT-PDL--IEDKKCDFK 174 Query: 186 GPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245 G + N+ D+P + +G + + + E + Y E+RD P+ T+ L Sbjct: 175 GKLLEFNV----DFP-----SLENLGFSASNITVEPYNLEHLDIYAEKRDFPSDDITTYL 225 Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFS-WLNELIWREFYRHLMAFYPSVCMG 304 P+L G +S R+ LI+ G S +L+EL+WREF+ ++ +P V + Sbjct: 226 GPHLRFGTVSVRK------------LIRGLDGLESVFLSELVWREFFTQILFHFPKV-VT 272 Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364 + F + I+W + + W G TG+P++DA MRQLN G+MHNR+RMITA FL K Sbjct: 273 QNFRSKYDGIKWRNNKEDFEKWCTGNTGYPMVDAGMRQLNKTGYMHNRVRMITAGFLCKH 332 Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424 LL+DW+ GE YF +LLD +LASNNG WQWAA TG D+ PYFRIFNP Q K+FD + Sbjct: 333 LLIDWQWGEAYFAKKLLDYELASNNGNWQWAAGTGCDAAPYFRIFNPITQLKKFDKDFKY 392 Query: 425 IRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQY 474 ++HW+PEL+ NYP P+V+HK A L Y Sbjct: 393 VKHWIPELD-------------------GFNYPQPMVEHKAARERALKVY 423 >gi|107028642|ref|YP_625737.1| deoxyribodipyrimidine photolyase [Burkholderia cenocepacia AU 1054] gi|116690199|ref|YP_835822.1| deoxyribodipyrimidine photo-lyase [Burkholderia cenocepacia HI2424] gi|105897806|gb|ABF80764.1| deoxyribodipyrimidine photo-lyase type I [Burkholderia cenocepacia AU 1054] gi|116648288|gb|ABK08929.1| deoxyribodipyrimidine photo-lyase type I [Burkholderia cenocepacia HI2424] Length = 519 Score = 238 bits (608), Expect = 1e-60, Method: Compositional matrix adjust. Identities = 154/486 (31%), Positives = 241/486 (49%), Gaps = 35/486 (7%) Query: 1 MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHF 60 + A +++ +VW R+DLR+TD AL A S ++ VF+ + + Sbjct: 28 VSAKPSVAPAIVWFRDDLRVTDQPALTRAVE-SGRPLVCVFVDDTGAGAGPALGGAARWW 86 Query: 61 IYASLLQVQKSLSQ-KGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRR 119 ++ SL + +L++ G + D+ ++ +++NR+Y + Sbjct: 87 LHGSLAGLDAALARHDGRLLLLRG-----DAQREIERVVGDTGAAAVYWNRRYAQPQRDA 141 Query: 120 DKLLEKRLQHR-VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLP 178 D L+ L+ R V +S + S+L P +L + Y+V+T + +A ++ A LP Sbjct: 142 DAALKASLKARGVTVESSNGSLLNEPWEVLTGSGGPYQVFTAYWRAARRDRTVA--APLP 199 Query: 179 VPAIRLTGPVTPSNI-------------PRFFDYPFQAIDPMFPIGEQNALHILRKFCKE 225 P R+ P + P D+ D E AL L F Sbjct: 200 APE-RIAFHPWPQAVRDRALALDALALRPHAPDWAGGLRDAWPAPDEAGALARLDTFLTT 258 Query: 226 KVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNEL 285 + Y + RD P TS+LSP+L G +SPRQ W+ ++ + A +L+EL Sbjct: 259 SLAGYADARDRPDRPATSRLSPFLRFGNVSPRQVWHAVQGAANAGGAVYAAHADKFLSEL 318 Query: 286 IWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNT 345 WREF L+ +P++ F + + W D L+AW++G TG+P++DA +R+L T Sbjct: 319 GWREFSYTLLYHFPALATDN-FRAQFDAMPWRDDPAALRAWQRGRTGYPLVDAGLRELWT 377 Query: 346 IGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPY 405 GWMHNR+RM+ ASFL+K LL+DWR GE +F L+D D A+N WQW A G D+ PY Sbjct: 378 TGWMHNRVRMVVASFLIKHLLIDWRAGEAWFRDTLVDADPANNAASWQWVAGCGADAAPY 437 Query: 406 FRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSW------LDKND--LSLNYP 457 FRIFNP QG++ DP G ++R W+PEL + IHAP W L+ L ++YP Sbjct: 438 FRIFNPVAQGQKCDPDGAYVRRWVPELAGLDDASIHAP--WEASPLALEAAGVRLGIDYP 495 Query: 458 LPIVDH 463 P+V+H Sbjct: 496 APLVEH 501 >gi|126663929|ref|ZP_01734924.1| deoxyribodipyrimidine photolyase-class I [Flavobacteria bacterium BAL38] gi|126624193|gb|EAZ94886.1| deoxyribodipyrimidine photolyase-class I [Flavobacteria bacterium BAL38] Length = 428 Score = 238 bits (608), Expect = 1e-60, Method: Compositional matrix adjust. Identities = 161/472 (34%), Positives = 227/472 (48%), Gaps = 49/472 (10%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 +++ W R DLR+ DN L+ A NS V+ +FI E Q + FI+ L ++ Sbjct: 1 MNIFWFRRDLRLEDNVGLFHAL-NSTEDVLPIFIFDSEILSQLPKDDARVSFIHEQLEKI 59 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128 Q L++ G IE + +T ++ N YE +RDK + + Sbjct: 60 QSELNKIGKSLAVFHGK----PIEIFTQLISENTITSVYTNHDYEPYARKRDKEMNQLFT 115 Query: 129 HRVIC-KSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187 I + D V+ ++ Y VYTPF K +N + L + T Sbjct: 116 TNGISFLTSKDQVIFEKSEVVKDDGSPYVVYTPFSKKWKENFKKIKL-------VHYTSE 168 Query: 188 VTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKF--CKEKVYYYVEQRDIPAIQGTSQL 245 + + YPF ++ IG + + + F + + Y R+ PA+ TS L Sbjct: 169 DKLDKVAKH-SYPFLSLTD---IGFEKSNIKVSAFDVSENLIQNYEATRNFPALNKTSYL 224 Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305 YL G +S R+ + I K+ F W NELIWREF+ ++ +P Sbjct: 225 GIYLRFGAVSIRKM--------IAKAIAEKNDTF-W-NELIWREFFMQILWHFPH-TYNS 273 Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365 F P + I WN + L Q W +G TG+P +DA MR+LN+ G MHNR+RMI ASFL K L Sbjct: 274 SFRPKYDGIVWNNNEELFQKWCEGKTGYPFVDAGMRELNSTGHMHNRVRMIVASFLCKHL 333 Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425 L+DWR GE YF +LLD ++ASN G WQWAA +G D+ PYFRIFNPT Q K+FD +I Sbjct: 334 LIDWRWGETYFAQKLLDYEMASNVGNWQWAAGSGVDAAPYFRIFNPTEQIKKFDKDLKYI 393 Query: 426 RHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477 + W+PEL T+Y YP PIVDHK+A L Y A Sbjct: 394 KKWIPELE---TEY----------------YPKPIVDHKEARERCLKVYKEA 426 >gi|85708828|ref|ZP_01039894.1| hypothetical protein NAP1_06295 [Erythrobacter sp. NAP1] gi|85690362|gb|EAQ30365.1| hypothetical protein NAP1_06295 [Erythrobacter sp. NAP1] Length = 463 Score = 238 bits (607), Expect = 2e-60, Method: Compositional matrix adjust. Identities = 157/478 (32%), Positives = 242/478 (50%), Gaps = 40/478 (8%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 ++WLR DLR+ DN ALY A V+ V++ E H + +++ SL + K Sbjct: 6 ILWLRRDLRMADNPALYHAAKA--GPVVCVYVLDDEAPEHHRMGGASRWWLHHSLESLSK 63 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130 SL + + D++E L + + N YE + +K+L+ Sbjct: 64 SLGTRNAKLILRRG----DAVEELTTVANAVGADTIHANTHYEPWWRK----AQKKLKDE 115 Query: 131 VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTP 190 + + +D L P G + + YK+YTPF KAL Q L D+ LP P L+ P Sbjct: 116 IDLQLYDGVYLFPAGHVTTGSGDPYKIYTPFYKALRQELPPRDV--LPEPET-LSSPDDW 172 Query: 191 SNIPRFFDYPFQAIDP--------MFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGT 242 D+ P + +GE A L ++ ++ V Y ++R+ P++ T Sbjct: 173 PASDELADWNLLPTKPDWSGGIADFWEVGEDAAHERLSEW-EDHVADYEDKRNFPSVDKT 231 Query: 243 SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVC 302 S+LSP+L G +SP Q W+ LK + D G S+ +ELIWR++ +++ YP+ Sbjct: 232 SRLSPHLHFGEISPVQVWHALKHKRSD-------GWNSFESELIWRDYAANVICEYPAYA 284 Query: 303 MGKPFIPWTEKIEW------NKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMI 356 + + +K+EW K + L+ W++G TG+PI+DA MRQL GWMHNR+RMI Sbjct: 285 -SENYREDYDKLEWRDPDSDEKAAKDLKKWQEGKTGYPIVDAGMRQLWQTGWMHNRVRMI 343 Query: 357 TASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGK 416 TASFL+K LL+DWR GE++F L+D D +SN WQW A TG DS + RI P Q + Sbjct: 344 TASFLIKHLLIDWRKGEQWFWDCLVDADYSSNAVNWQWNAGTGVDSNMFSRIMAPLTQSE 403 Query: 417 RFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQY 474 +FD +IR ++PEL ++ YIH P + L YP ++ HK+ ++ Y Sbjct: 404 KFD-AAAYIREYVPELADLDEPYIHDPE---EHGRLPKAYPAKMIAHKEGRERAMSAY 457 >gi|325528961|gb|EGD05987.1| deoxyribodipyrimidine photo-lyase [Burkholderia sp. TJI49] Length = 452 Score = 238 bits (607), Expect = 2e-60, Method: Compositional matrix adjust. Identities = 150/460 (32%), Positives = 231/460 (50%), Gaps = 38/460 (8%) Query: 53 ISARQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQY 112 + Q +++ SL ++ SLS G + + E + S ++ R +F+NR+Y Sbjct: 1 MGGAQKWWLHESLKKLDDSLSALGGSLLVLRGNEH----EAIRSLAVETRAAMVFWNRRY 56 Query: 113 EINEVRRDKLLEKRLQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPF-RKALIQNLV 170 + D ++K L R I +F+ +L P ++ ++V++ + R A N Sbjct: 57 SKAQTEMDASIKKDLIGRGIDVSTFNGHLLREPWTVATREGLPFQVFSAYWRAARRDNFF 116 Query: 171 QADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFP-----------IGEQNALHIL 219 LP PA PV+ + A+ P P GE+ A H L Sbjct: 117 PPC--PLPAPARITFFPVSRNVSAHVSTLSELALQPSTPDWAEGLRATWRCGEEAAGHQL 174 Query: 220 RKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCW-------NRLKEEFVDLLI 272 F + Y RD PA + TS+LSPYL G +S RQ W + ++ V + Sbjct: 175 EAFIENSFSDYAGARDFPATRATSRLSPYLRFGNISARQVWYATLSAVDAMRSRRVVRID 234 Query: 273 KPKSGAFS-WLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYT 331 K+ + + + +EL WREF +L+ ++ F + + W D+ L+AW++G T Sbjct: 235 DAKNESLNKFFSELGWREFSYYLL-YHCEPLHQFNFRRQFDAMPWRTDAKALRAWQRGKT 293 Query: 332 GFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGG 391 G+P++DA MR+L GWMHNR+RM+TASFL K LL+DWR GE +F L+D D ASN G Sbjct: 294 GYPLVDAGMRELWHTGWMHNRVRMVTASFLTKHLLIDWREGEAWFWDTLVDADEASNPAG 353 Query: 392 WQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND 451 WQW + +G D+ PYFRIFNP +QG++FD G + R W+PEL+ +P + +H+P W + Sbjct: 354 WQWVSGSGADAAPYFRIFNPVLQGEKFDSSGEYTRRWVPELSALPAETLHSP--WTASAE 411 Query: 452 --------LSLNYPLPIVDHKKACHHTLNQYYAAKKQSLL 483 L +YP PIVDH+ A L+ QS + Sbjct: 412 ALREASIALGASYPFPIVDHQVARARALSSVEILNTQSQM 451 >gi|229488858|ref|ZP_04382724.1| deoxyribodipyrimidine photo-lyase [Rhodococcus erythropolis SK121] gi|229324362|gb|EEN90117.1| deoxyribodipyrimidine photo-lyase [Rhodococcus erythropolis SK121] Length = 448 Score = 238 bits (607), Expect = 2e-60, Method: Compositional matrix adjust. Identities = 149/475 (31%), Positives = 235/475 (49%), Gaps = 31/475 (6%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 MS ++W R DLR+ D L AA ++ + + +F+ + G S RQ+ ++A+L Sbjct: 1 MSNSVIWFRRDLRVGDLPTLTAAA-DAGGQTLGLFVLDEKLLGPAG-SPRQNQ-LFANLS 57 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 + L + +V + D + + ++ + Y RRD + ++ Sbjct: 58 ALDNQLDGRLMVVR-------GDPADVVPRVAESVGAEEVHISADYGPYGRRRDAAVAEK 110 Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 ++ + + PG + YKV+TP+ + +++ + S V +R Sbjct: 111 VELIATGSPY----AVAPGRVTKADGDPYKVFTPYFRQWMEHGWRGPA-STDVGTVRWFD 165 Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246 P PR P + +GE AL +++C+ + Y ++R+ P + TS++S Sbjct: 166 PSEKDGGPRRVSIPAPSGTVSDVVGEAGALEQWKEYCENDLDRYDDERNRPDLDTTSRMS 225 Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP 306 L G + PR DL + GA ++ +L WR+FY ++ P K Sbjct: 226 IPLKYGTIHPRTM-------LADLSKRLGDGAQAYRRQLAWRDFYADILFQRPDSAR-KN 277 Query: 307 FIPWTEKIEWNKD---SHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363 + +++ + AW +G TGFPI+DA MRQL WMHNR+RMI ASFLVK Sbjct: 278 YDDKFDRLRHDGGVDADAAFTAWCEGKTGFPIVDAGMRQLAAENWMHNRVRMIVASFLVK 337 Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423 DL + W G YFMSQL+DGDLASN GWQW A +G D+ P+FR+FNP QG++FDP GT Sbjct: 338 DLHIPWWRGARYFMSQLVDGDLASNQHGWQWTAGSGTDASPFFRVFNPITQGEKFDPDGT 397 Query: 424 FIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478 ++R W+PEL +VP + +H+ K ++YP PIVDH L +Y K Sbjct: 398 YVRRWVPELRDVPGKAVHSL-----KAMRPVDYPDPIVDHAHEREEALRRYGEIK 447 >gi|146340206|ref|YP_001205254.1| deoxyribodipyrimidine photo-lyase [Bradyrhizobium sp. ORS278] gi|146193012|emb|CAL77021.1| Deoxyribodipyrimidine photo-lyase (DNA photolyase) (Photoreactivating enzyme) [Bradyrhizobium sp. ORS278] Length = 415 Score = 238 bits (607), Expect = 2e-60, Method: Compositional matrix adjust. Identities = 137/396 (34%), Positives = 206/396 (52%), Gaps = 21/396 (5%) Query: 94 LDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH-RVICKSFDDSVLLPPGSILNHAL 152 L + + +++N + R +E L H V + F D +L+ P ++ Sbjct: 19 LGQLARETNASAVYWNDVAQAGPRRVAASVEADLDHIGVASRVFPDDLLVDPATMSGKDG 78 Query: 153 QMYKVYTPFRKALIQNLVQADLRSLPVPA-IRLTGPVTPSNIPRFFDYPFQ-----AIDP 206 + +V+TPF K ++ + + LP PA + + VT + P + + Sbjct: 79 RGPRVFTPFWKRVLA--LGDPPKPLPTPARLPMVPDVTGLTVDDLRLEPTKPDWAGGLRA 136 Query: 207 MFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEE 266 + GE+ A LR F + V Y RD P I TS+LSP+L G ++PRQ W+ + Sbjct: 137 TWQAGERAAQQRLRSFLESTVSGYAADRDRPDIDATSRLSPHLRFGEITPRQIWHAARFA 196 Query: 267 FVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAW 326 + + K G +L+E+ WREF RHL+ P + + P + W +D L AW Sbjct: 197 AEERPAQAK-GIDKFLSEIGWREFSRHLLYNNPDLA-SRNLQPSFDPFPWVQDDAALAAW 254 Query: 327 KQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLA 386 ++G TG+PI+DA +R+L G MHNR+RM+ AS LVK LL+DWR GE++F L+D D Sbjct: 255 QRGRTGYPIVDAGLRELWHTGSMHNRVRMVAASLLVKHLLIDWRQGEQWFWDTLVDADPG 314 Query: 387 SNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSW 446 SN WQW A +G D+ PYFR+FNP +QG++FD G+++R W+PEL +P IH P W Sbjct: 315 SNPASWQWVAGSGADAAPYFRVFNPVLQGEKFDANGSYVRRWVPELARLPAGVIHQP--W 372 Query: 447 LDKN--------DLSLNYPLPIVDHKKACHHTLNQY 474 K L +YP PI+DHK+ L Y Sbjct: 373 AAKPLELAEAGVTLGRSYPTPIIDHKQGRERALAAY 408 >gi|325292582|ref|YP_004278446.1| DNA photolyase [Agrobacterium sp. H13-3] gi|325060435|gb|ADY64126.1| DNA photolyase [Agrobacterium sp. H13-3] Length = 479 Score = 238 bits (606), Expect = 2e-60, Method: Compositional matrix adjust. Identities = 168/496 (33%), Positives = 247/496 (49%), Gaps = 38/496 (7%) Query: 5 TAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYAS 64 T S +VW R DLR+ DN AL AA + VI ++I + + Q +++ S Sbjct: 3 TKSSPVIVWFRKDLRLADNLALLAAVEHG-GPVIPIYI---RETSSGPLGGAQEWWLHHS 58 Query: 65 LLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLE 124 L + +L + G + N ++++ L + + +NR+YE + DK ++ Sbjct: 59 LASLSAALEKCGSRLLL-RSGNAEETLRRL---IAETGADAVLWNRRYEPTGMATDKAIK 114 Query: 125 KRL-QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIR 183 + L + +SF +L P + + Y+VYTPF +AL ++ P A + Sbjct: 115 EALGDDGLTVRSFAGHLLHEPSRVQTKSGGPYRVYTPFWRAL----EGSEEPHTPADAPQ 170 Query: 184 -LTGPVTPSNIPRFFDYPFQAIDP--------MFPIGEQNALHILRKFCKEKVYYYVEQR 234 L P T S + D+ + P ++ GE A L F + Y E R Sbjct: 171 SLKAPETWSKSEKLDDWKLLPVKPDWAKDFSEIWTPGENAAREKLDDFIDGALKGYEEGR 230 Query: 235 DIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHL 294 D PA TS L+P+L++G +SP W+ K + S + EL+WREF HL Sbjct: 231 DFPAKDATSLLAPHLALGEISPAAVWHATKGLSRHIASNDIS---RFRKELVWREFCYHL 287 Query: 295 MAFYPSVCMGKPFIPWTEKIE---WNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHN 351 + +P + W + W D AW +G TG+PI+DA MRQL G MHN Sbjct: 288 LFHFPELDEKN----WNDSFGAFGWRDDDTSFNAWTRGMTGYPIVDAGMRQLWKHGTMHN 343 Query: 352 RLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNP 411 R+RMI ASFL+K LL+DWR GE++F L+D D ASN WQW A +G D+ P+FRIFNP Sbjct: 344 RVRMIVASFLIKHLLIDWRKGEKWFRDTLVDADPASNAANWQWVAGSGADASPFFRIFNP 403 Query: 412 TIQGKRFDPQGTFIRHWLPELNNVPTQYIH----APHSWLDKNDLSLN--YPLPIVDHKK 465 +QG++FD +G ++R ++PEL + +YIH AP L K + L YPLPIVDH K Sbjct: 404 ILQGEKFDAEGDYVRRFVPELERLERKYIHKPFEAPKEVLKKAGIELGKTYPLPIVDHGK 463 Query: 466 ACHHTLNQYYAAKKQS 481 A L Y K + Sbjct: 464 ARERALAAYAEVKNNA 479 >gi|299821147|ref|ZP_07053035.1| deoxyribodipyrimidine photo-lyase [Listeria grayi DSM 20601] gi|299816812|gb|EFI84048.1| deoxyribodipyrimidine photo-lyase [Listeria grayi DSM 20601] Length = 457 Score = 238 bits (606), Expect = 2e-60, Method: Compositional matrix adjust. Identities = 156/477 (32%), Positives = 243/477 (50%), Gaps = 50/477 (10%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 + L L N + T + L++ + +K+ A + P + G S R+ F + ++ Q Sbjct: 1 MQLGVLLNRVFRTKHNPLFSYVEQNRSKIDACYFIIPLE-DLKGASERKKAFYFGTVNQF 59 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKL--------FYNRQYEINEVRRD 120 L++ ++ F + E L +C +Q++ + ++ +Y+I +R+ Sbjct: 60 LTELAK-------YEIRPFLVTYEKLPEFCQKQKIDTILMAGDIMSYHQEEYDIRH-QRE 111 Query: 121 KLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKA-----LIQNLVQADLR 175 KL L+ K+ P + + + YKV+TPF KA IQ L+ Sbjct: 112 KLTAAGLE----IKTIRVQHYFHPRATFKNGDEPYKVFTPFYKANRPHVTIQKPAAYSLK 167 Query: 176 SLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRD 235 L + TG + S YP + E+ A+ + F E + Y R+ Sbjct: 168 QLSEITVTGTGHLDHS-------YPDDGL------SEEQAVANWQTFLNESIEAYETNRE 214 Query: 236 IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLM 295 + A TS LS YL+ G++ +Q +N+L +D + +++ EL++REFY LM Sbjct: 215 VLAEIKTSWLSVYLAYGLIDIQQIFNQL----LDQREANEKNYEAFIRELLFREFYYVLM 270 Query: 296 AFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRM 355 YP + + F P +IEW+ + + WK G TG+PI+DAAM++LN G+MHNR+RM Sbjct: 271 VTYPEMAT-QSFKPNYRQIEWSLNKANFERWKNGETGYPIVDAAMQELNQTGYMHNRMRM 329 Query: 356 ITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQG 415 + + FL KDL +DWR GE+YF SQL+D D ASN GWQW+ASTG D+VPYFR+FNP Q Sbjct: 330 VVSQFLTKDLFIDWRWGEDYFRSQLIDYDNASNVNGWQWSASTGTDAVPYFRMFNPIRQS 389 Query: 416 KRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDK------NDLSLNYPLPIVDHKKA 466 +RFD G +I+ +LP VP Y+H K +L YP PIVDHK++ Sbjct: 390 ERFDQDGAYIKQYLPIFKAVPAAYLHDTEKNKAKLAAECDIELGKTYPAPIVDHKQS 446 >gi|157737085|ref|YP_001489768.1| deoxyribodipyrimidine photolyase [Arcobacter butzleri RM4018] gi|157698939|gb|ABV67099.1| deoxyribodipyrimidine photolyase [Arcobacter butzleri RM4018] Length = 450 Score = 238 bits (606), Expect = 2e-60, Method: Compositional matrix adjust. Identities = 156/460 (33%), Positives = 244/460 (53%), Gaps = 41/460 (8%) Query: 10 HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69 ++W R DLRI DN+ L N+ +V+ +FI + ++ FIY S+ +++ Sbjct: 3 QILWFRRDLRIIDNEIL----ANAKGEVLPIFIFDKNILQNLPKDDKRVTFIYKSVYKLK 58 Query: 70 KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH 129 + L G+ + F D+ + + + ++ ++ + ++ +RD+ +EK + Sbjct: 59 EDLKSIGL-----DLAIFFDTPKNVFTKLKKENFDEILVSVDFDNYAKKRDEEVEKIIPL 113 Query: 130 RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189 R F DS L+ P IL + YKV+TPF L + L Q++ + T Sbjct: 114 R----RFLDSYLIDPKIILKSDQKPYKVFTPFYNYL-EPLHQSN---------HIEEFKT 159 Query: 190 PSNIPRF-FDYPFQAIDPMFPIGEQNALHILRKFCKE-------KVYYYVEQRDIPAIQG 241 +NI + FDY F EQ L K E K+ Y + RD + Sbjct: 160 ATNIKKINFDYDFFPTLQDLGFIEQKLPDFLYKSADELITIFSKKINNYQKNRDFFHLDA 219 Query: 242 TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSV 301 S LS +L G++S + +N++K+ L PK ++ ELIWREFY +++ +P Sbjct: 220 GSNLSVHLRFGLISAKMVFNKIKK-----LQAPKKEIDFFIRELIWREFYNYILFHFPKS 274 Query: 302 CMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFL 361 + E + WN++ + W +G TG PIIDA+M+ LN G MHNRLRMI AS+L Sbjct: 275 QFEN--LNGIE-VNWNENEEDFKKWCEGNTGVPIIDASMKHLNNTGLMHNRLRMIVASYL 331 Query: 362 VKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQ 421 VK+LL+DW+ GEEYF +LLD + +SN G WQWAASTG D+VPYFR+FNP +Q K+FD + Sbjct: 332 VKNLLIDWKKGEEYFALKLLDYEASSNIGSWQWAASTGVDAVPYFRVFNPYLQSKKFDSE 391 Query: 422 GTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIV 461 FI+ L +L ++PT+ IH + + ++ L+YP IV Sbjct: 392 AIFIKSVLKDLKDIPTKQIHTENGI--QENIFLDYPKQIV 429 >gi|111021970|ref|YP_704942.1| deoxyribodipyrimidine photo-lyase [Rhodococcus jostii RHA1] gi|110821500|gb|ABG96784.1| deoxyribodipyrimidine photo-lyase [Rhodococcus jostii RHA1] Length = 446 Score = 238 bits (606), Expect = 2e-60, Method: Compositional matrix adjust. Identities = 150/477 (31%), Positives = 230/477 (48%), Gaps = 46/477 (9%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M LVW R DLR+ D L+ S A+ + +F+ G + R F++ SL Sbjct: 1 MDTALVWFRRDLRLGDLPTLHTVS-ESGARALGLFVLDDRLLTTSGGARRD--FLFRSLA 57 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 + L + +V + D ++ + + ++ + Y RD + + Sbjct: 58 ALDDQLDGRLLVVK-------GDPVDVVPRVAKKVSAEEVHVSADYGPYGRERDAAVAEH 110 Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 + + + PG + + Y+V+TP+ + +++ +A + TG Sbjct: 111 VDLVATGSPY----AVAPGRVTKTDGEPYRVFTPYFRQWLEHGWRAPID---------TG 157 Query: 187 PVT-----PSNI-PRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ 240 T P+++ R P D P GE AL +FC + + Y + RD P + Sbjct: 158 SATVEWLDPNDVKARRVAIPEPESDGC-PAGEAAALQRWAEFCDDDLAGYEDARDRPGLD 216 Query: 241 GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPS 300 TS++S YL G + PR DL + + A + +L WR+FY ++ P Sbjct: 217 ATSRMSVYLKYGNIHPRTM-------LRDLARRRSTSAEQYRRQLAWRDFYADILFQRPD 269 Query: 301 VCMGKPFIPWTEKIEWNKDSHLLQA---WKQGYTGFPIIDAAMRQLNTIGWMHNRLRMIT 357 G + + I ++ S +A W +G TGFPI+DA MRQL WMHNR+RMI Sbjct: 270 SARGN-YDRRFDHIRYDSGSDAEEAYTAWCEGRTGFPIVDAGMRQLKAEAWMHNRVRMIV 328 Query: 358 ASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKR 417 ASF VKDL + W G YFM+QL+DGDLA+N GWQW A +G D+ PYFR+FNPT QG++ Sbjct: 329 ASFFVKDLHLPWWRGARYFMNQLVDGDLANNQHGWQWTAGSGTDASPYFRVFNPTTQGEK 388 Query: 418 FDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQY 474 FDP G ++R W+PEL +P + +HA K+ +YP PIVDH L +Y Sbjct: 389 FDPDGEYVRRWVPELRGIPGKAVHAL-----KDGRPEDYPPPIVDHAHERQEALARY 440 >gi|121997706|ref|YP_001002493.1| deoxyribodipyrimidine photo-lyase [Halorhodospira halophila SL1] gi|121589111|gb|ABM61691.1| Deoxyribodipyrimidine photo-lyase [Halorhodospira halophila SL1] Length = 477 Score = 237 bits (605), Expect = 2e-60, Method: Compositional matrix adjust. Identities = 157/492 (31%), Positives = 237/492 (48%), Gaps = 39/492 (7%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M+ LVWLR DLR+ D AL A ++ ++ V+I P + R + A +++ SL Sbjct: 1 MTNALVWLRRDLRLADQPALARAAQTAE-RLAPVYIHAPAETRPT-VGAASCWWLHHSLA 58 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWL---DSYCLQQRVTKLFYNRQYEINEVRRDKLL 123 + L+ G + + W D+ + + RQ E + Sbjct: 59 ALDAELASAGSRLCLDTGPSAERLCHWAQVSDAAVVYCTAIAEPWARQQEAAVAEALAAI 118 Query: 124 EKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIR 183 RL+ D +L P ++ N + Y+ +TPF +++ L P Sbjct: 119 GVRLE------VLADGLLTDPSAVRNRSGTPYRAFTPFWRSVRAQLDPPRPAPPPALPGL 172 Query: 184 LTGPVTPSNIPRFFDYPF----QAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAI 239 P + P + + P + G A L +F Y E+RD PA Sbjct: 173 PEAIPEPQPLETLGLLPRIRWDEKLAPCWQPGAAGAQQRLERFLDGAGPAYGERRDFPAQ 232 Query: 240 QGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAF--SWLNELIWREFYRHLMAF 297 GTS+LSP+L G +S R W+ +++ ++P + ++L EL WREF HL+ Sbjct: 233 PGTSRLSPHLHFGEISIRAVWHAVRDA---QQMQPAAADALDTFLAELGWREFAYHLLWQ 289 Query: 298 YPSV---CMGKPF--IPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNR 352 P + + + F PW E + D LL AW++G TG P++DA MR+L GWMHNR Sbjct: 290 QPELHRTPIDERFSRFPWRE----DPDGALLDAWRRGATGIPLVDAGMRELWATGWMHNR 345 Query: 353 LRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPT 412 +RM+ SFLVK+L + W+ GE +F L+D DLASN+ GWQW + G D+ PYFRIFNP Sbjct: 346 VRMVVGSFLVKNLRLPWQHGEAHFRDTLVDWDLASNSMGWQWVSGCGADAAPYFRIFNPV 405 Query: 413 IQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND--------LSLNYPLPIVDHK 464 QG+RFDP G ++RHW+PE+ +P +IH P W D L +YP P+VD Sbjct: 406 RQGERFDPDGDYVRHWVPEVAGLPKSHIHQP--WAAPADARARCGLHLGRDYPEPLVDLA 463 Query: 465 KACHHTLNQYYA 476 + L ++A Sbjct: 464 TSRKEALAAFHA 475 >gi|222479858|ref|YP_002566095.1| DNA photolyase FAD-binding [Halorubrum lacusprofundi ATCC 49239] gi|222452760|gb|ACM57025.1| DNA photolyase FAD-binding [Halorubrum lacusprofundi ATCC 49239] Length = 514 Score = 237 bits (605), Expect = 3e-60, Method: Compositional matrix adjust. Identities = 165/521 (31%), Positives = 234/521 (44%), Gaps = 58/521 (11%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSD---AKVIAVFIATPEQWRQHGISARQSHFI--YA 63 + L W R DLR+ DN L AA D VF+ P+ H R + A Sbjct: 1 MELFWHRRDLRVADNVGLAAATGTRDDGRGPAAPVFVFDPDVL-DHASDVRVRRLLDGLA 59 Query: 64 SLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLL 123 +L + +V + + + LD+ ++ +NR Y RD + Sbjct: 60 ALRDDYRDRGSDLLVARGAPETVLPELAAALDA-------ERVVWNRDYSGLARERDAGV 112 Query: 124 EKRLQHRVICKS-FDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQA-----DLRSL 177 L I + D+VL P SI +A Y VY+ + K + D L Sbjct: 113 RTALNDAGIDREVLHDAVLHTPESIRTNAGDPYSVYSYYWKKWTDRVADPPAPTPDAGDL 172 Query: 178 PVPAIRLTGPVTP-----------------SNIPRFFDYPFQAIDP-MFPIGEQNALHIL 219 V A LT V ++P D F + + P G + A L Sbjct: 173 -VDAGDLTAAVGTDGGAETDGGAAIDRVAVGDLPAPADLGFAEPEADVGPAGTEAARDRL 231 Query: 220 RKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIK------ 273 F E V+ Y +RD PA + TS++S +L G + R+ + K+ K Sbjct: 232 DDFLSEAVFSYDAERDYPAREATSRMSAFLKYGEIGVREAYEATKDAMAMAEEKTGERDE 291 Query: 274 -----------PKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHL 322 P + + +L WREFY ++ P V + + + E I W D Sbjct: 292 GGDHEDGDDEGPVAAVEEYQKQLAWREFYTQVLYHNPEVVT-ENYKEYEEGIAWRDDPDE 350 Query: 323 LQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLD 382 + AWK+G TG+PI+DA MRQL +MHNR+RMI ASFL KDLL DWR G +YF L D Sbjct: 351 IAAWKRGETGYPIVDAGMRQLREEAFMHNRVRMIVASFLTKDLLADWRHGYDYFRETLAD 410 Query: 383 GDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHA 442 D A+++GGWQWAASTG D+ PYFRIFNP QG+R+DP +I+ ++PEL + IH Sbjct: 411 HDTANDSGGWQWAASTGTDAQPYFRIFNPMTQGERYDPDAEYIKRYVPELRGLDADLIHE 470 Query: 443 PH--SWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481 H S + + + NYP PIVDH + L Y A+ + Sbjct: 471 WHELSPTQRANAAPNYPAPIVDHSERREEALAMYKRARGED 511 >gi|254462705|ref|ZP_05076121.1| deoxyribodipyrimidine photolyase [Rhodobacterales bacterium HTCC2083] gi|206679294|gb|EDZ43781.1| deoxyribodipyrimidine photolyase [Rhodobacteraceae bacterium HTCC2083] Length = 473 Score = 237 bits (605), Expect = 3e-60, Method: Compositional matrix adjust. Identities = 164/481 (34%), Positives = 242/481 (50%), Gaps = 37/481 (7%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 +VW R DLR++D+ AL AAC ++ VIAVFI G+ A + +L + Sbjct: 8 IVWFRRDLRVSDHPALSAAC-SARVPVIAVFIKDD---IVDGLGAAPKWRLGKALEVFTQ 63 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130 +L++ I + D LD+ + ++++R Y+ V RD +++ L + Sbjct: 64 TLARLNIPLILREGPAGDV----LDALITETDAQGVYWSRLYDPACVTRDTVIKADLLSK 119 Query: 131 VI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189 + +SF ++ P ++ MYKVYTPF +++ V L ++P G + Sbjct: 120 GLEARSFGGHLMFEPWTVETKTGGMYKVYTPFWRSVKDRDVDVPL-AVPTSVQPYEGHLE 178 Query: 190 PSNIPRFFDYPFQA--------IDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQG 241 ++ D+ A + +GE A L F + V YVE+RDIP+ +G Sbjct: 179 SADQS---DWALGAAMRRGGVIVARHAQVGEAAAQARLADFIENDVSDYVERRDIPSTRG 235 Query: 242 TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSV 301 TS LS L++G +SP QCW+ + L + K + +L EL+WREF HL P + Sbjct: 236 TSGLSENLALGEISPHQCWH----AGMRALHEGKDDSEVFLKELVWREFAYHLTHHTPHI 291 Query: 302 CMGKPFIPWTEKIEWNKDSHLLQ--AWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITAS 359 W +K WN+D+ + AWKQG TG +DAAMR++ G MHNR RMI AS Sbjct: 292 LDSNWKSDW-DKFAWNEDADHPEVIAWKQGRTGIEFVDAAMREMYVTGKMHNRGRMIVAS 350 Query: 360 FLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFD 419 +L K LL W++G+ +F L D D ASN GWQWAA +G D+ PYFR+FNP Q +FD Sbjct: 351 YLTKHLLTHWKVGQAWFDDCLTDWDPASNAMGWQWAAGSGPDASPYFRVFNPVTQLDKFD 410 Query: 420 PQGTFIRHWLPELNNVP----TQYIHA-PHSW-LDKNDLSLNYPLPIVDHKKACHHTLNQ 473 + + R W+ E P T Y A P SW L D+ YP PIV+ K L+ Sbjct: 411 RERGYARAWIAEGQGNPPDTATSYFEAIPKSWGLRSTDI---YPKPIVEAAKGRQRALDA 467 Query: 474 Y 474 Y Sbjct: 468 Y 468 >gi|120436173|ref|YP_861859.1| deoxyribodipyrimidine photo-lyase [Gramella forsetii KT0803] gi|117578323|emb|CAL66792.1| deoxyribodipyrimidine photo-lyase [Gramella forsetii KT0803] Length = 435 Score = 237 bits (604), Expect = 3e-60, Method: Compositional matrix adjust. Identities = 150/478 (31%), Positives = 228/478 (47%), Gaps = 53/478 (11%) Query: 6 AMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASL 65 + V++ W R DLR+ DN L AA D V+ +FI E + + FI+ L Sbjct: 2 SKKVNIFWFRRDLRLDDNAGLKAALQ-GDLPVLPIFIFDHEILEKLPEDDARVTFIFEEL 60 Query: 66 LQVQKSLSQ---KGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKL 122 +++ +L + I Y + + K+F NR YE RD+ Sbjct: 61 QEMRSTLQEDHGSSIAIFYRTPEKV------FKNLISDYEIEKVFTNRDYEPYAKERDQK 114 Query: 123 LEKRLQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPA 181 + K L I + F D V+ ++ Y VYTP++ + + DL Sbjct: 115 IAKILSGNDIEFEDFKDQVIFEKDEVVKKDGDPYVVYTPYKNLWREKFSKIDL-DFHYTT 173 Query: 182 IRLTGPVTPSNIPRFFDYPFQAIDPMFPIG-EQNALHILR-KFCKEKVYYYVEQRDIPAI 239 + S +P + IG ++++L + K + Y ++RD PA+ Sbjct: 174 RYMDNFYQNSRLPNL---------SLADIGFKKSSLKVPDYKVTPGLIKDYKDKRDYPAV 224 Query: 240 QGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYP 299 +GTS+L P+L G +S RQ EE ++L+EL+WREF+ ++ +P Sbjct: 225 EGTSRLGPHLRFGTVSVRQMIRDADEE----------SNKTFLDELVWREFFMQILFHFP 274 Query: 300 SVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITAS 359 + F ++IEW + + WKQG TG+P++DA MRQLN G+MHNR+RM+ S Sbjct: 275 DTVT-EAFKKKYDRIEWRNNKDEFELWKQGKTGYPLVDAGMRQLNESGFMHNRIRMLVGS 333 Query: 360 FLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFD 419 FL K LL+DWR GE YF +LLD +++SN G WQW A +G D+ PYFRIFNPT Q ++FD Sbjct: 334 FLCKHLLIDWRWGEAYFAEKLLDYEMSSNVGNWQWVAGSGVDAAPYFRIFNPTTQIEKFD 393 Query: 420 PQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477 +I+ W+PE + +YP +VDHK+A L Y A Sbjct: 394 KDKEYIKEWVPEFG-------------------TDDYPEKMVDHKEARERALKTYKEA 432 >gi|154248595|ref|YP_001419553.1| deoxyribodipyrimidine photo-lyase [Xanthobacter autotrophicus Py2] gi|154162680|gb|ABS69896.1| Deoxyribodipyrimidine photo-lyase [Xanthobacter autotrophicus Py2] Length = 500 Score = 237 bits (604), Expect = 3e-60, Method: Compositional matrix adjust. Identities = 156/492 (31%), Positives = 236/492 (47%), Gaps = 35/492 (7%) Query: 8 SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67 S L+W R+DLR++DN AL AA + + A+++ + + ++ SL Sbjct: 24 SPSLLWFRDDLRLSDNPAL-AALAEARTPLAALYVLDEDSPGVRPLGGAARWWLAQSLRA 82 Query: 68 VQKSLSQKGI--VFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125 + L +G+ + + + + L + +N + E R D + Sbjct: 83 LAADLKDRGVPLILRRGPANRVVPEVAALLG------AATVAFNDRAGAAETRVDHAVAA 136 Query: 126 RL---QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAI 182 RL RV+ SF +L PPGS+ + M + ++ F +A ++ A P+PA Sbjct: 137 RLLSEDRRVL--SFCAHLLHPPGSVEGASGGMPRTFSSFHRAALK----ARRLDTPLPAP 190 Query: 183 R-LTGPVTPSNIPRFFDYPFQAIDP--------MFPIGEQNALHILRKFCKEKVYYYVEQ 233 + L G P + + P + GE A L F + Y E Sbjct: 191 KHLDGVAHPPEGETLESFDLEPTHPDWAGGLRSAWTAGEAAAQARLAAFMDAGLAGYAEG 250 Query: 234 RDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRH 293 RD P + S+LSP+L G +SPRQ + ++ + P A + EL WREF H Sbjct: 251 RDRPDLNHVSRLSPHLRFGEISPRQILSAVRHA-AEAGAVPLVDADKFEAELYWREFSYH 309 Query: 294 LMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRL 353 L+A P + + W + L+AW +G TG+P++DA +RQL GWMHNR+ Sbjct: 310 LLAEMPDLARSN-IQHGFDAFPWRECPGELKAWHKGLTGYPLVDAGLRQLWQTGWMHNRV 368 Query: 354 RMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTI 413 RM+ ASFL K LL+DWR GE++F L+D D A+N WQW A +G D+ PYFRIFNP Sbjct: 369 RMVVASFLTKHLLIDWRSGEDWFWDTLVDADGANNAASWQWVAGSGLDAAPYFRIFNPVT 428 Query: 414 QGKRFDPQGTFIRHWLPELNNVPTQYIHAP-----HSWLDKN-DLSLNYPLPIVDHKKAC 467 QG++FDP GT++R ++PEL +P IH P H+ L YP P+VDH A Sbjct: 429 QGEKFDPDGTYVRTFVPELGKLPAPLIHKPWTADAHTLAHAGIRLGHTYPRPLVDHGAAR 488 Query: 468 HHTLNQYYAAKK 479 L + + +K Sbjct: 489 ERALRAFESTRK 500 >gi|254476074|ref|ZP_05089460.1| deoxyribodipyrimidine photolyase [Ruegeria sp. R11] gi|214030317|gb|EEB71152.1| deoxyribodipyrimidine photolyase [Ruegeria sp. R11] Length = 478 Score = 237 bits (604), Expect = 3e-60, Method: Compositional matrix adjust. Identities = 161/492 (32%), Positives = 242/492 (49%), Gaps = 53/492 (10%) Query: 13 WLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQKSL 72 W+R DLR++DN AL AA +S A V+ VFI + + A + L + + L Sbjct: 14 WIRRDLRLSDNAALTAAV-DSGAPVLPVFIFDSQD---EDLGAAPRFRLGLGLEHLAQRL 69 Query: 73 SQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR-V 131 + G + S +++ L + + + R Y+ RD L+++ L+ + V Sbjct: 70 ERLGSRLILRRGS----ALQVLQDLLKETGAQAVHWTRAYDPASRARDTLIKETLKSQGV 125 Query: 132 ICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPS 191 S+ ++L P ++ MY+VYTPF +A+ R VP + V P Sbjct: 126 AAHSYSGNLLFEPWTVETKTGGMYRVYTPFWRAV---------RGRDVPGLL----VAPG 172 Query: 192 NIPRFFDYP-------------FQAIDPMFP----IGEQNALHILRKFCKEKVYYYVEQR 234 IP +P + P+ +GE+ A L +F + + Y + R Sbjct: 173 TIPAPEQWPNSDQLDTWKLAAAMRRGAPVLAAHCRVGEEAAQDRLDEFIETGIARYQDLR 232 Query: 235 DIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHL 294 D+PA+ GTS LS L+ G +SP++ W+R E + + +GA ++L E++WREF HL Sbjct: 233 DLPAVDGTSGLSENLAWGEISPQRMWHRGAEA----MAQGAAGAETFLKEVVWREFAYHL 288 Query: 295 MAFYPSVCMGKPFIPWTEKIEW--NKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNR 352 M P + W + W N+D+ + AWKQG TG+ +DAAMR+L G MHNR Sbjct: 289 MFHTPHILTKSWREEW-QSFAWSENEDTPEVLAWKQGRTGYRFVDAAMRELYVTGKMHNR 347 Query: 353 LRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPT 412 RMI ASFL K +L WRIG+++F L+D D ASN GWQW A +G D+ P+FR+FNP Sbjct: 348 ARMIVASFLTKHMLTHWRIGQKWFEHCLVDWDPASNAMGWQWVAGSGPDAAPFFRVFNPD 407 Query: 413 IQGKRFDPQGTFIRHWLPELNNVPTQYIHA-----PHSWLDKNDLSLNYPLPIVDHKKAC 467 Q +FDP+G + W+ E N P A P SW D++ P PI+D K Sbjct: 408 GQLDKFDPKGRYQAQWIAEGNPKPPDTARAFFTACPKSWQLSADMA--RPRPILDLKAGR 465 Query: 468 HHTLNQYYAAKK 479 L Y+ K Sbjct: 466 ERALEAYHNRDK 477 >gi|121601607|ref|YP_993682.1| deoxyribodipyrimidine photolyase [Burkholderia mallei SAVP1] gi|126448880|ref|YP_001081232.1| deoxyribodipyrimidine photolyase [Burkholderia mallei NCTC 10247] gi|238562973|ref|ZP_00439583.2| deoxyribodipyrimidine photolyase [Burkholderia mallei GB8 horse 4] gi|254178225|ref|ZP_04884880.1| deoxyribodipyrimidine photolyase [Burkholderia mallei ATCC 10399] gi|254199318|ref|ZP_04905684.1| deoxyribodipyrimidine photolyase [Burkholderia mallei FMH] gi|254205631|ref|ZP_04911983.1| deoxyribodipyrimidine photolyase [Burkholderia mallei JHU] gi|121230417|gb|ABM52935.1| deoxyribodipyrimidine photolyase [Burkholderia mallei SAVP1] gi|126241750|gb|ABO04843.1| deoxyribodipyrimidine photolyase [Burkholderia mallei NCTC 10247] gi|147748914|gb|EDK55988.1| deoxyribodipyrimidine photolyase [Burkholderia mallei FMH] gi|147753074|gb|EDK60139.1| deoxyribodipyrimidine photolyase [Burkholderia mallei JHU] gi|160699264|gb|EDP89234.1| deoxyribodipyrimidine photolyase [Burkholderia mallei ATCC 10399] gi|238521576|gb|EEP85026.1| deoxyribodipyrimidine photolyase [Burkholderia mallei GB8 horse 4] Length = 486 Score = 237 bits (604), Expect = 3e-60, Method: Compositional matrix adjust. Identities = 158/503 (31%), Positives = 249/503 (49%), Gaps = 42/503 (8%) Query: 1 MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHF 60 M ++ +++ +VW +DLR++D+ AL A S VI V++ E+ + + Sbjct: 1 MSSSISIAPAVVWFCDDLRVSDHPALMRAA-ESGRPVIGVYVFD-ERAGGRPLGGAARWW 58 Query: 61 IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120 ++ SL + +L+ G + D + S+ ++++R+Y + D Sbjct: 59 LHGSLRALGAALAALGGTLALLRGDEHDTIV----SFAAALGAGAVYWSRRYALAARAVD 114 Query: 121 KLLEKRLQHRVIC-KSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPV 179 ++ L + I ++F+ S+L PG ++N + Y+V++ + +A ++ R +P Sbjct: 115 NAVQTALDAQGIAVETFNASLLFEPGDLVNADGRPYQVFSAYWRAAMR-------RGVPA 167 Query: 180 PAI----RLTGPVTPSNIPR-FFDYPFQAIDPMFP-----------IGEQNALHILRKFC 223 P + RL G P+ + R ++P P GE A LR F Sbjct: 168 PPLGAPRRLNGGALPAALARQCVALDALGLEPTGPDWAGGLRDAWRFGEDAAHRRLRAFV 227 Query: 224 KEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLN 283 ++ Y +RD P I TS+LSPY+ G LS RQ W+ + + ++ +L+ Sbjct: 228 DSRLGGYAAERDRPGIASTSRLSPYVRFGNLSARQLWHAAADAYAHGAAT-QADLDKFLS 286 Query: 284 ELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQL 343 EL WREF + +P + + + + W D L AW++G TG+P +DA MR+L Sbjct: 287 ELGWREFGWTQLHHFPDLPR-RNLRHTLDGMPWRDDPAALAAWRRGATGYPFVDAGMREL 345 Query: 344 NTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSV 403 GWMHNR+RM+ ASFLVK LL+DWR GE +F L+D D ASN WQW A G D+ Sbjct: 346 WATGWMHNRVRMVCASFLVKHLLIDWRAGEAWFWDTLVDADAASNAANWQWVAGCGADAA 405 Query: 404 PYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND--------LSLN 455 PYFRIFNP QG++FDP G ++R W+PEL +P IH P W L Sbjct: 406 PYFRIFNPVAQGRKFDPDGAYVRRWVPELAGLPPATIHEP--WAAPGAQLAAAGVRLGET 463 Query: 456 YPLPIVDHKKACHHTLNQYYAAK 478 YPLPIV + A L+ + A + Sbjct: 464 YPLPIVAYDAARRRALDAFGAIR 486 >gi|167570597|ref|ZP_02363471.1| deoxyribodipyrimidine photolyase [Burkholderia oklahomensis C6786] Length = 486 Score = 237 bits (604), Expect = 4e-60, Method: Compositional matrix adjust. Identities = 159/499 (31%), Positives = 242/499 (48%), Gaps = 34/499 (6%) Query: 1 MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHF 60 M A +++ +VW R+DLR++D+ AL A + + A R G +AR + Sbjct: 1 MSAVFSIAPAVVWFRDDLRVSDHPALVRAAESGRPVIGAYVFDECAGGRPLGGAARW--W 58 Query: 61 IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120 ++ SL + +L+ G D + + S+ +++NR+Y + + D Sbjct: 59 LHGSLRALDAALAALGSRLVLLS----GDEADTITSFAAALGAGAVYWNRRYALAQRAVD 114 Query: 121 KLLEKRLQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPV 179 ++ L+ R I ++F+ S+L PG ++ + + Y+V+T + +A ++ V A + P Sbjct: 115 NTVQTALEARGIDVETFNASLLFEPGDLVTDSGRPYQVFTAYWRAAMRRGVHAAPLAAPR 174 Query: 180 PAIRLTGPVTPSNIP-RFFDYPFQAIDPMFP-----------IGEQNALHILRKFCKEKV 227 RL G P + R + + P P GE A LR F ++ Sbjct: 175 ---RLKGCELPPRLAQRQVELDALGLAPARPDWAGGLRETWTCGEDAAHRRLRAFVDSRL 231 Query: 228 YYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIW 287 Y RD P TS+LSP++ G LS RQ W+ + ++ ++ EL W Sbjct: 232 GGYATGRDRPGAASTSRLSPFVRFGNLSVRQVWHAAVDAHAHGAAT-QADLDTFCRELGW 290 Query: 288 REFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIG 347 REF + +P + + + + W D L AW++G TG+P +DA MR+L G Sbjct: 291 REFCYGQLYRFPDLAR-RNLRHNLDGMPWRDDPAALAAWRRGATGYPFVDAGMRELWATG 349 Query: 348 WMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFR 407 WMHNR RM+ ASFLVK LL+DWR G+ +F L+D D ASN WQW A G D+ PYFR Sbjct: 350 WMHNRARMVCASFLVKHLLIDWREGDAWFWDTLVDADAASNAANWQWVAGCGADAAPYFR 409 Query: 408 IFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND--------LSLNYPLP 459 IFNP QGK+FDP G ++R W+PEL +P IH P W L YPLP Sbjct: 410 IFNPIAQGKKFDPDGAYVRRWVPELAGLPANAIHEP--WAAPAARLAAAGVRLGDTYPLP 467 Query: 460 IVDHKKACHHTLNQYYAAK 478 IV H A L+ + + Sbjct: 468 IVAHDAARKRALDAWVTVR 486 >gi|296392873|ref|YP_003657757.1| deoxyribodipyrimidine photo-lyase [Segniliparus rotundus DSM 44985] gi|296180020|gb|ADG96926.1| Deoxyribodipyrimidine photo-lyase [Segniliparus rotundus DSM 44985] Length = 444 Score = 236 bits (603), Expect = 4e-60, Method: Compositional matrix adjust. Identities = 152/475 (32%), Positives = 229/475 (48%), Gaps = 41/475 (8%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 L W R DLR+ D L + + +F+ P R G + + +++++L + + Sbjct: 6 LCWFRRDLRLADQPMLLEVAK----EAVGLFVLDPRLTRGSGQA--RLDYLFSALAALDE 59 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130 +L + +V + D L+ + R T+ F + L + + R Sbjct: 60 TLGGRLVVAEGDPARVVPDVARELNVGAV--RCTEDFAPYGRARDAAVAAALKAQGRELR 117 Query: 131 VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTP 190 + + PG + N + Y+V+TPFR+A + P PA TG + Sbjct: 118 PAGSPY----AISPGRVRNGSGNPYRVFTPFRRAWSAH-------GWPRPA--QTGADST 164 Query: 191 SNIPRFFDYPFQAIDPMF--PIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPY 248 + + P GEQ A F + + Y + RD PA+ GTS+LS + Sbjct: 165 RWLAAEVSCQTELPSPRLVREAGEQAAAARWTAFLEGALAGYAQNRDFPAVDGTSRLSAH 224 Query: 249 LSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVC---MGK 305 L G L PR L++ F + EL WR+FY +++ +P + + Sbjct: 225 LKFGALHPRTL---LRDIAAADADDTDKDVF--VTELAWRDFYADVLSHHPRTAWHNVDR 279 Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365 F ++ W+ AW++G TG+PI+DA MRQL GWMHNR+RMITASFL KDL Sbjct: 280 RF----DRFAWSDSQEHFAAWQRGETGYPIVDAGMRQLAAEGWMHNRVRMITASFLTKDL 335 Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425 + W+ G +F+ L+DGDLASN+ GWQW A TG D+ PYFR+FNPT QGK+FDP G +I Sbjct: 336 HLPWQWGARHFIRLLVDGDLASNSHGWQWTAGTGTDAAPYFRVFNPTAQGKKFDPGGEYI 395 Query: 426 RHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQ 480 + W+P+L ++P H P N YP PIVDH + L +Y A K + Sbjct: 396 QRWVPQLRDMPGPKAHEP------NPRPAGYPPPIVDHAQERAEALLRYEAVKGR 444 >gi|254586765|ref|XP_002498950.1| ZYRO0G22418p [Zygosaccharomyces rouxii] gi|238941844|emb|CAR30017.1| ZYRO0G22418p [Zygosaccharomyces rouxii] Length = 557 Score = 236 bits (603), Expect = 5e-60, Method: Compositional matrix adjust. Identities = 156/485 (32%), Positives = 243/485 (50%), Gaps = 32/485 (6%) Query: 13 WLRNDLRITDNKALYAACHNSD---AKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69 W RNDLRI DN Y A S A+++ +F W H S + +Y SL + Sbjct: 76 WFRNDLRIHDNTGFYTAVEESQRLGARILTIFTINQNDWIAHLDSNPKLTLMYQSLKSLH 135 Query: 70 KSLSQKGI-----VFQYHQ--CSNFDDSIEWLDSYCLQ--QRVTKLFYNRQYEINEVRRD 120 LS+ GI VF + SN + WL CL+ L N +Y +E+ RD Sbjct: 136 GKLSELGIPLYTLVFDSGEPKLSNSMQFVIWLRDQCLKISNGAIYLTANAEYLADELYRD 195 Query: 121 KLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVP 180 + + F D+ ++ PG + + Y V++P+ K ++ + + Sbjct: 196 IRVFAVSDEKFQFNVFHDTCIVEPGVLKTNQDSPYTVFSPWYKKWCLRVMDGKSSTNLIE 255 Query: 181 AIRLTGPVTPSN---IPRFFDY----PFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQ 233 + L + + + + F Y F + + E A L F ++ V Y++ Sbjct: 256 PLVLEKRIYNDDEEFVHKEFSYYLPSQFLSSTTIPDASEDAAWSRLTTFLQKNVGNYLD- 314 Query: 234 RDIPAIQGTSQLSPYLSIGVLSPRQCWNR----LKEEFVDLLIKPKSGAFSWLNELIWRE 289 +D + +S LSPYL++G+LS R N + V K + ++ E+ WR+ Sbjct: 315 KDTLLTEASSHLSPYLALGILSARCVVNEAFRLVGSRLVGKSPKDMTPVEQFIREVAWRD 374 Query: 290 FYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWM 349 FY+ ++ F+P + M PF + +I+W+ + Q W G TGFPI+DA MR+L+ G++ Sbjct: 375 FYKDVICFWPYLSMDIPFNLSSLEIKWDNNFSNFQKWCLGKTGFPIVDAIMRKLSQDGYI 434 Query: 350 HNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIF 409 +NR RMITASFL K+LL+DWR GE++F L+D DLASN GGW + +STG D+ PYFR+F Sbjct: 435 NNRARMITASFLSKNLLIDWRWGEKWFRKHLIDCDLASNVGGWGFVSSTGADAQPYFRVF 494 Query: 410 NPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHH 469 N Q + FDP G FI+ W+PEL N ++ +H+ ++ +YP PI D K + Sbjct: 495 NMERQSRAFDPNGEFIKKWVPELKN--SKNVHSSIQEVE------SYPNPITDSKSSRQR 546 Query: 470 TLNQY 474 L Y Sbjct: 547 ALEIY 551 >gi|108799005|ref|YP_639202.1| deoxyribodipyrimidine photo-lyase type I [Mycobacterium sp. MCS] gi|119868120|ref|YP_938072.1| deoxyribodipyrimidine photo-lyase type I [Mycobacterium sp. KMS] gi|126434608|ref|YP_001070299.1| deoxyribodipyrimidine photo-lyase type I [Mycobacterium sp. JLS] gi|108769424|gb|ABG08146.1| deoxyribodipyrimidine photo-lyase type I [Mycobacterium sp. MCS] gi|119694209|gb|ABL91282.1| deoxyribodipyrimidine photo-lyase type I [Mycobacterium sp. KMS] gi|126234408|gb|ABN97808.1| deoxyribodipyrimidine photo-lyase type I [Mycobacterium sp. JLS] Length = 445 Score = 236 bits (602), Expect = 5e-60, Method: Compositional matrix adjust. Identities = 152/470 (32%), Positives = 231/470 (49%), Gaps = 38/470 (8%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 L+W R DLR+ D AL A D +V+A ++ P R G R+ +++ +L ++ Sbjct: 4 LLWFRRDLRLHDLPALVDAAQG-DGQVLACYVLDPRLHRSAG--PRRLQYLHDALRDLRD 60 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130 L + +V + + +D+ + ++ + + RRD + K L Sbjct: 61 QLDGRLLVTRGRPEQRIPALAKSIDA-------SAVYVSGDFTPFGRRRDDAVRKALGE- 112 Query: 131 VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTP 190 V + L+ PG + YKV++PF A ++ +A +S P A + P Sbjct: 113 VPLQPSGSPYLVSPGRVTKGDGTPYKVFSPFFDAWRRHGWRAPAQSGPDSATWID-PADL 171 Query: 191 SNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLS 250 + + P P GE+ A R F +++ Y + R+ P + TS++S +L Sbjct: 172 TGRDLRTEIPDDGATLDIPAGERAAAQHWRAFVADELDGYADNRNRPDLDVTSRMSAHLK 231 Query: 251 IGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPW 310 G + PR VD L + K GA ++L EL +R+FY ++ +P + W Sbjct: 232 FGTIHPRT--------MVDDLGRGK-GAQAYLRELAFRDFYAAVLHEWPRSV----WWNW 278 Query: 311 TEKI------EWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364 E AWK+G TGFPI+DA MRQL IGWMHNR+RMI ASFLVKD Sbjct: 279 NTGFDGIRVDEGAVAEQRFDAWKRGRTGFPIVDAGMRQLAGIGWMHNRVRMIVASFLVKD 338 Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424 L + W+ G +F+ QL+DGD+A+N GWQW A G D+ P+FR+FNP+ QG +FDP GT+ Sbjct: 339 LHLPWQWGARWFLEQLVDGDMANNQHGWQWTAGCGTDAAPFFRVFNPSTQGAKFDPDGTY 398 Query: 425 IRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQY 474 +R W+PEL V + +D +YP PIVDH L +Y Sbjct: 399 VRRWVPELKGVADVHKMG-------DDRPADYPAPIVDHAAERAEALRRY 441 >gi|315636258|ref|ZP_07891510.1| deoxyribodipyrimidine photolyase [Arcobacter butzleri JV22] gi|315479467|gb|EFU70148.1| deoxyribodipyrimidine photolyase [Arcobacter butzleri JV22] Length = 450 Score = 236 bits (602), Expect = 6e-60, Method: Compositional matrix adjust. Identities = 152/459 (33%), Positives = 242/459 (52%), Gaps = 39/459 (8%) Query: 10 HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69 ++W R DLRI DN+ L N+ +V+ +FI + ++ FIY S+ +++ Sbjct: 3 QILWFRRDLRIIDNEIL----ANAKGEVLPIFIFDKNILQNLPKDDKRVTFIYKSVYKLK 58 Query: 70 KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH 129 + L G+ + F D+ + + + ++ ++ + ++ +RD+ +EK + Sbjct: 59 EDLKSIGL-----DLAIFFDTPKNVFTKLKKENFDEILVSVDFDNYAKKRDEEVEKIIPL 113 Query: 130 RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189 R F DS L+ P IL + YKV+TPF N ++ +S + +++ + Sbjct: 114 R----RFLDSYLIDPKIILKSDQKPYKVFTPF-----YNCLEPLHQSNHIEEFKISTNIK 164 Query: 190 PSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKE-------KVYYYVEQRDIPAIQGT 242 N +DY F EQ L K E K+ Y + RD + Sbjct: 165 KIN----YDYDFFPTLQDLGFIEQKLPDFLYKSADELITIFSKKIDNYQKNRDFFHLDAG 220 Query: 243 SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVC 302 S LS +L G++S + +N++K+ L PK ++ ELIWREFY +++ +P Sbjct: 221 SNLSVHLRFGLISAKIVFNKIKK-----LQAPKKEIDFFIRELIWREFYNYILFHFPKSQ 275 Query: 303 MGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLV 362 K+ WN++ + W +G TG PIIDA+M+ LN G MHNRLRMI AS+LV Sbjct: 276 FENL---NGIKVNWNENEEDFKKWCEGNTGVPIIDASMKHLNNTGLMHNRLRMIVASYLV 332 Query: 363 KDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQG 422 K+LL+DW+ GEEYF +LLD + +SN G WQWAASTG D+VPYFR+FNP +Q K+FD + Sbjct: 333 KNLLIDWKKGEEYFALKLLDYEASSNIGSWQWAASTGVDAVPYFRVFNPYLQSKKFDSEA 392 Query: 423 TFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIV 461 FI+ L +L ++PT+ IH + + ++ L+YP IV Sbjct: 393 IFIKSVLKDLKDIPTKQIHTENGV--QENIFLDYPKQIV 429 >gi|326384210|ref|ZP_08205892.1| deoxyribodipyrimidine photo-lyase [Gordonia neofelifaecis NRRL B-59395] gi|326197075|gb|EGD54267.1| deoxyribodipyrimidine photo-lyase [Gordonia neofelifaecis NRRL B-59395] Length = 480 Score = 236 bits (602), Expect = 7e-60, Method: Compositional matrix adjust. Identities = 162/502 (32%), Positives = 237/502 (47%), Gaps = 62/502 (12%) Query: 8 SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67 S +VW R DLR++D +L AA +++ +AVF+ R G A ++ F+ L Sbjct: 3 SPAIVWFRRDLRLSDLPSLSAAADRAES-ALAVFVLDDALVRPSG--APRTTFLAGCLEA 59 Query: 68 VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127 + L + +V D ++ + V + + + RD+ +E L Sbjct: 60 LDADLGGRLLVVS-------GDPVQVIPELVDVLSVDSVHVSEDFGPYGRARDEAVEAAL 112 Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187 V + PG + A Y+V+TPF++A + + + PA LTGP Sbjct: 113 PASVPLIRTGSPYAVSPGRVRTKAGGPYRVFTPFKRAWLDHGWHS-------PA--LTGP 163 Query: 188 VT-----PSNI---PRFFDYPFQAIDPMF----------PI-GEQNALHILRKF---CKE 225 T P +I R A+ + P+ GE+ AL R F Sbjct: 164 DTVDWLDPDSILPRGRIERVGRAAVAELLTEEASDAAALPVAGEKAALERWRAFRDGGTS 223 Query: 226 KVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNEL 285 ++ Y + R+ P + TS+LSPYL G L PR + DL + GA + +EL Sbjct: 224 ELDRYADDRNRPDLDATSRLSPYLKFGCLHPRTILH-------DLRARTDDGATTLRSEL 276 Query: 286 IWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKD---SHLLQAWKQGYTGFPIIDAAMRQ 342 WR+FY ++ P + +++E++ AW +G TG+PI+DA MRQ Sbjct: 277 AWRDFYADVLFHRPETARTGVDAKF-DQMEYDSGPDADAAFDAWCRGRTGYPIVDAGMRQ 335 Query: 343 LNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDS 402 L GWMHNR+RMI ASFL KDL + W G YFM+ L+DGDLASN GWQW A G D+ Sbjct: 336 LLAEGWMHNRVRMIVASFLTKDLHLPWWRGARYFMTHLVDGDLASNQHGWQWTAGCGTDA 395 Query: 403 VPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAP----------HSWLDKNDL 452 PYFR+FNP QG+RFDP G ++R W+PEL + + +H P + D D Sbjct: 396 APYFRVFNPVSQGERFDPSGDYVRRWVPELRGIAGKAVHRPWKHAGGRTAEPALFDGTDG 455 Query: 453 SLNYPLPIVDHKKACHHTLNQY 474 YP PIVDH + L +Y Sbjct: 456 DRGYPPPIVDHAEERVVALARY 477 >gi|329115122|ref|ZP_08243877.1| Deoxyribodipyrimidine photo-lyase [Acetobacter pomorum DM001] gi|326695565|gb|EGE47251.1| Deoxyribodipyrimidine photo-lyase [Acetobacter pomorum DM001] Length = 522 Score = 236 bits (601), Expect = 8e-60, Method: Compositional matrix adjust. Identities = 165/475 (34%), Positives = 235/475 (49%), Gaps = 48/475 (10%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 LV LR+D R+ DN AL+AAC V+ ++ + Q + R + + A+ Q+ Sbjct: 60 LVLLRDDYRVADNPALHAACATGQ-PVLCAYVQ--DAALQDAPTTRIAGWAQAACAQLAT 116 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRV--TKLFYNRQYEINEVRRDKLLEKRLQ 128 SL ++G Q L L Q + T +F+NR+Y+ + D + L+ Sbjct: 117 SLHKQG------QTLLMLSGPTRLSVPALAQAINATDVFWNRRYDAPGIAADTDVHASLK 170 Query: 129 HR-VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKAL--------------IQNLVQAD 173 + V S +L P +I A Q Y+V+T + +A + Sbjct: 171 KQGVTVHSCTGRLLFEPWAIRTQAGQPYRVFTAWWRAARDLPEPPPPLPAPDMHGKSYVP 230 Query: 174 LRSLPVP-AIRLT--GPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYY 230 R+L +P +RL G P +P + GEQ A L +F + + Y Sbjct: 231 ARALNLPEGVRLARVGTQMPPALPGWTS------------GEQCAHTNLHRFIENALEDY 278 Query: 231 VEQRD-IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWRE 289 QRD A GTS LSPY+ +G +S RQ W+ ++ L + + A +L EL WR+ Sbjct: 279 ETQRDRTDATHGTSLLSPYIRVGQISVRQIWHAIRHA-AHLHPQLATDAEKFLAELGWRD 337 Query: 290 FYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWM 349 F M P + + + W D+ L AW+QG TGFP++DA MRQL GWM Sbjct: 338 FAWMQMFTTPDLAT-RNLRAEFNHMPWRTDATDLAAWQQGQTGFPLVDAGMRQLARTGWM 396 Query: 350 HNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIF 409 HNR+RM+ ASFL K LL DW+ GE +F + LLD D A N WQW A TG D+ P+FRIF Sbjct: 397 HNRVRMVVASFLTKHLLTDWQKGERWFYAHLLDADAAVNAMNWQWGAGTGIDAAPWFRIF 456 Query: 410 NPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHK 464 NP Q +++DP G +IR W+PEL + + IH P W K+ LNYP PIVD K Sbjct: 457 NPVGQSEKYDPLGQYIRTWVPELAALDNKTIHTP--W--KSAQRLNYPPPIVDLK 507 >gi|226364473|ref|YP_002782255.1| deoxyribodipyrimidine photo-lyase [Rhodococcus opacus B4] gi|226242962|dbj|BAH53310.1| deoxyribodipyrimidine photo-lyase [Rhodococcus opacus B4] Length = 446 Score = 236 bits (601), Expect = 8e-60, Method: Compositional matrix adjust. Identities = 149/477 (31%), Positives = 229/477 (48%), Gaps = 46/477 (9%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M LVW R DLR+ D L+ S A+ + +F+ + G + R F++ SL Sbjct: 1 MDTALVWFRRDLRLGDLPTLHTVA-ESGARALGLFVLDDRLLKTSGGARRD--FLFRSLA 57 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 + SL + +V + D ++ + + ++ + Y RD + + Sbjct: 58 ALDDSLDGRLLVVK-------GDPVDVVPRVAKKVSAEEVHVSADYGPYGRERDAAVAEH 110 Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 + + + PG + + Y+V+TP+ + +++ +A + TG Sbjct: 111 VDLVATGSPY----AVAPGRVTKTDGEPYRVFTPYFRQWLEHGWRAPID---------TG 157 Query: 187 PVT-----PSNI-PRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ 240 P T P ++ R P D + GE AL +FC++ + Y + RD P + Sbjct: 158 PDTVEWMDPDDVKTRRVTIPEPESD-GYAAGEAAALERWAEFCEDDLAGYEDARDRPGLD 216 Query: 241 GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPS 300 TS++S YL G + PR DL + A + +L WR+FY ++ P Sbjct: 217 ATSRMSVYLKYGNIHPRTM-------LRDLARRRSKSAEQYRRQLAWRDFYADILFQRPD 269 Query: 301 VCMGKPFIPWTEKIEWNKD---SHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMIT 357 G + + I ++ AW +G TGFPI+DA MRQL WMHNR+RMI Sbjct: 270 SARGN-YDRRFDHIRYDSGPDAEDAYTAWCEGRTGFPIVDAGMRQLKAENWMHNRVRMIV 328 Query: 358 ASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKR 417 ASF VKDL + W G YFM+QL+DGDLA+N GWQW A +G D+ PYFR+FNPT QG++ Sbjct: 329 ASFFVKDLHLPWWRGARYFMNQLVDGDLANNQHGWQWTAGSGTDASPYFRVFNPTTQGEK 388 Query: 418 FDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQY 474 FDP G ++R W+PEL + + +HA K+ +YP PIVDH L +Y Sbjct: 389 FDPDGEYVRRWVPELRGISGKAVHAL-----KDGRPEDYPPPIVDHAHERQEALARY 440 >gi|120403248|ref|YP_953077.1| deoxyribodipyrimidine photo-lyase [Mycobacterium vanbaalenii PYR-1] gi|119956066|gb|ABM13071.1| deoxyribodipyrimidine photo-lyase type I [Mycobacterium vanbaalenii PYR-1] Length = 442 Score = 236 bits (601), Expect = 9e-60, Method: Compositional matrix adjust. Identities = 162/472 (34%), Positives = 234/472 (49%), Gaps = 38/472 (8%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 ++W R DLR+ D AL AA D +V+A ++ P G R+ ++Y +L ++ Sbjct: 1 MLWFRRDLRLADLPALLAASEG-DGEVLACYVLDPRLKSSSG--PRRLQYLYDALRDLRD 57 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130 +L + +V H ++ + T + + + RRD + L Sbjct: 58 NLDGRLLVTHGH-------PVQRIPLLAKAVGATSVHVSEDFTPFGRRRDDQVRDALGG- 109 Query: 131 VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTP 190 V + L+ PG + YKV+TPF A + + S P A R P Sbjct: 110 VELVATGSPYLVSPGRVTKADGTPYKVFTPFFAAWRTHGWRPPAGSGPASA-RWIDPDDV 168 Query: 191 SNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLS 250 + P D P + P GE AL +F ++ + Y E R+ P + TS++S +L Sbjct: 169 TGGPAAADIPDTGLQLELPAGETAALRAWTRFTRDGLADYDEDRNRPDLAATSRMSAHLK 228 Query: 251 IGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPW 310 G + PR L GA ++L EL +R+FY ++A +P + W Sbjct: 229 FGAIHPRTMAADLGR---------GEGAQAYLRELAFRDFYASVLAEWPDSA----WWNW 275 Query: 311 T---EKIEWNKDSHL---LQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364 + IE + D AWKQG TGFPI+DA MRQL G+MHNR+RMITASFLVKD Sbjct: 276 NTAFDAIEVDDDGDAQKSFAAWKQGRTGFPIVDAGMRQLAETGFMHNRVRMITASFLVKD 335 Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424 L + W+ G +F+ QL+DGD+A+N GWQWAA G D+ PYFR+FNP+ QGK+FDP G + Sbjct: 336 LHLPWQWGARWFLEQLVDGDIANNQHGWQWAAGCGTDAAPYFRVFNPSTQGKKFDPSGDY 395 Query: 425 IRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYA 476 +R W+PEL +V +H LD D YP PIVDH + L +Y A Sbjct: 396 VRRWVPELADV--DDVHK----LD-GDRPDGYPEPIVDHGQERAEALRRYRA 440 >gi|56696791|ref|YP_167152.1| deoxyribodipyrimidine photolyase [Ruegeria pomeroyi DSS-3] gi|56678528|gb|AAV95194.1| deoxyribodipyrimidine photolyase [Ruegeria pomeroyi DSS-3] Length = 481 Score = 236 bits (601), Expect = 9e-60, Method: Compositional matrix adjust. Identities = 167/489 (34%), Positives = 233/489 (47%), Gaps = 39/489 (7%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 + WLR DLR+ D+ L AA S V+ VFI + A + + L + Sbjct: 8 IYWLRRDLRLADHPGL-AAAAASGRPVVPVFI---HDESVAALGAAPAFRLGLGLERFGA 63 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130 +L G + S + L + + +++ R+Y + RD L+ LQ Sbjct: 64 TLGDMGSRLILRRGS----APAVLQALIAETGAGAVWWTREYTPQAITRDSALKTALQQA 119 Query: 131 VI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189 I +SF ++L P ++ A YKVYTPF +A+ Q V A P PA R+ P Sbjct: 120 GIEARSFGGALLFEPWTVETGAGGFYKVYTPFWRAVSQREVSA---PDPAPA-RVRPPEA 175 Query: 190 PSNIPRFFDYPFQAIDPMF----------PIGEQNALHILRKFCKEKVYYYVEQRDIPAI 239 D+ A PM GE AL L +F + Y RD+PA Sbjct: 176 WPGSEALSDWGLGA--PMRRGAAVVATHQAPGEAAALERLDRFIATGIGQYDACRDLPAG 233 Query: 240 QGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYP 299 GTS LS LS+G + PR W+R E K GA ++L +L+WR+F HLM P Sbjct: 234 DGTSTLSDALSLGEIGPRTLWHRAGEA----AHKGAQGAETFLKQLVWRDFAYHLMYHTP 289 Query: 300 SVCMGKPFIPWTEKIEWNKDSH--LLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMIT 357 + + + + P E W D AW +G TG P++DAAMR++ G MHNR RMI Sbjct: 290 HL-LSENWRPGWEVFPWATDPADPGFVAWTRGRTGVPLVDAAMREMYVTGRMHNRARMIA 348 Query: 358 ASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKR 417 AS+L K L+V W++G ++F L D D A+N GWQW A G D+ PYFRIFNP Q K+ Sbjct: 349 ASYLTKHLMVHWKLGMDWFADCLTDWDPAANAMGWQWVAGCGPDAAPYFRIFNPETQAKK 408 Query: 418 FDPQGTFIRHWLPELNNVPTQ----YIHA-PHSWLDKNDLSLNYPLPIVDHKKACHHTLN 472 FDP+G + HW+ E P + Y A P SW + D S YP PI+ + L+ Sbjct: 409 FDPKGRYRNHWIAEGQAEPPRAALSYFDAVPRSWNLRPDAS--YPPPIMALDQGRRRALS 466 Query: 473 QYYAAKKQS 481 Y +A Q Sbjct: 467 AYASAFSQG 475 >gi|254525755|ref|ZP_05137807.1| deoxyribodipyrimidine photolyase [Prochlorococcus marinus str. MIT 9202] gi|221537179|gb|EEE39632.1| deoxyribodipyrimidine photolyase [Prochlorococcus marinus str. MIT 9202] Length = 478 Score = 236 bits (601), Expect = 9e-60, Method: Compositional matrix adjust. Identities = 171/478 (35%), Positives = 249/478 (52%), Gaps = 45/478 (9%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 L W R DLRI DN+AL A S+A + + +I E + + ++ F+ SL ++ Sbjct: 7 LFWHRKDLRIFDNQALNKAISLSNA-ITSTYIFD-ENYSHDFNANSRAWFLGNSLQELGN 64 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKL------FYNRQYEINEVRRDKLLE 124 + + G IE D + ++ K+ F+N+ E E+ RD ++ Sbjct: 65 NWHRMGSRL----------VIEKGDPILIIPKLAKIIDAKFVFWNKSIEPYEINRDSKIK 114 Query: 125 KRLQHRVI--CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALI----------QNLVQA 172 K+L+ + I +S+D +L+ P I + + Y VY PF K L Q+ V Sbjct: 115 KKLKEKNIQFIESWD-HLLVEPSKIFSGNNKPYSVYGPFYKNLKSKMKFLGSYNQDKVIC 173 Query: 173 DLRS----LPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEK-V 227 + L I + + + + I P P GE A +L+ F EK + Sbjct: 174 QFKDIDNKLKENKIINSSDSVLNKFLKNIKFSGSNICPCRP-GEVAAETLLKNFINEKKI 232 Query: 228 YYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAF-SWLNELI 286 Y Y RD+P+ GTS LS L G +S R+ WN D S + +W EL+ Sbjct: 233 YSYNSVRDLPSHIGTSFLSASLRFGTISIRKVWNATLNLNSDFESHENSLSIETWQKELV 292 Query: 287 WREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTI 346 WREFY+H + +P + G PF ++ W ++ Q W +G TG PI+DAAMRQLN+ Sbjct: 293 WREFYQHCLFHFPELEQG-PFRKKWDQFPWINNNEWFQHWSKGETGVPIVDAAMRQLNST 351 Query: 347 GWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYF 406 GWMHNR RMI ASFLVKDL+ +W++GE+ FM L+DGDLA+NNGGWQW+AS+G D P Sbjct: 352 GWMHNRCRMIVASFLVKDLICNWQMGEKKFMETLVDGDLAANNGGWQWSASSGMDPKP-L 410 Query: 407 RIFNPTIQGKRFDPQGTFIRHWLPELNNVP-TQYIHAPHSWLDKNDLSLNYPLPIVDH 463 RIFNP Q K+FDP +I+ W+PEL+ V + ++ S L+ N NY PIV+H Sbjct: 411 RIFNPYTQAKKFDPICEYIKSWIPELSKVSNSDILNGEISNLENN----NYSKPIVNH 464 >gi|124383478|ref|YP_001028857.1| deoxyribodipyrimidine photolyase [Burkholderia mallei NCTC 10229] gi|254357787|ref|ZP_04974060.1| deoxyribodipyrimidine photolyase [Burkholderia mallei 2002721280] gi|124291498|gb|ABN00767.1| deoxyribodipyrimidine photolyase [Burkholderia mallei NCTC 10229] gi|148026914|gb|EDK84935.1| deoxyribodipyrimidine photolyase [Burkholderia mallei 2002721280] Length = 534 Score = 236 bits (601), Expect = 9e-60, Method: Compositional matrix adjust. Identities = 157/503 (31%), Positives = 249/503 (49%), Gaps = 42/503 (8%) Query: 1 MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHF 60 + ++ +++ +VW +DLR++D+ AL A S VI V++ E+ + + Sbjct: 49 LSSSISIAPAVVWFCDDLRVSDHPALMRAA-ESGRPVIGVYVFD-ERAGGRPLGGAARWW 106 Query: 61 IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120 ++ SL + +L+ G + D + S+ ++++R+Y + D Sbjct: 107 LHGSLRALGAALAALGGTLALLRGDEHDTIV----SFAAALGAGAVYWSRRYALAARAVD 162 Query: 121 KLLEKRLQHRVIC-KSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPV 179 ++ L + I ++F+ S+L PG ++N + Y+V++ + +A ++ R +P Sbjct: 163 NAVQTALDAQGIAVETFNASLLFEPGDLVNADGRPYQVFSAYWRAAMR-------RGVPA 215 Query: 180 PAI----RLTGPVTPSNIPR-FFDYPFQAIDPMFP-----------IGEQNALHILRKFC 223 P + RL G P+ + R ++P P GE A LR F Sbjct: 216 PPLGAPRRLNGGALPAALARQCVALDALGLEPTGPDWAGGLRDAWRFGEDAAHRRLRAFV 275 Query: 224 KEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLN 283 ++ Y +RD P I TS+LSPY+ G LS RQ W+ + + ++ +L+ Sbjct: 276 DSRLGGYAAERDRPGIASTSRLSPYVRFGNLSARQLWHAAADAYAHGAAT-QADLDKFLS 334 Query: 284 ELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQL 343 EL WREF + +P + + + + W D L AW++G TG+P +DA MR+L Sbjct: 335 ELGWREFGWTQLHHFPDLPR-RNLRHTLDGMPWRDDPAALAAWRRGATGYPFVDAGMREL 393 Query: 344 NTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSV 403 GWMHNR+RM+ ASFLVK LL+DWR GE +F L+D D ASN WQW A G D+ Sbjct: 394 WATGWMHNRVRMVCASFLVKHLLIDWRAGEAWFWDTLVDADAASNAANWQWVAGCGADAA 453 Query: 404 PYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND--------LSLN 455 PYFRIFNP QG++FDP G ++R W+PEL +P IH P W L Sbjct: 454 PYFRIFNPVAQGRKFDPDGAYVRRWVPELAGLPPATIHEP--WAAPGAQLAAAGVRLGET 511 Query: 456 YPLPIVDHKKACHHTLNQYYAAK 478 YPLPIV + A L+ + A + Sbjct: 512 YPLPIVAYDAARRRALDAFGAIR 534 >gi|53725670|ref|YP_102418.1| deoxyribodipyrimidine photolyase [Burkholderia mallei ATCC 23344] gi|52429093|gb|AAU49686.1| deoxyribodipyrimidine photolyase [Burkholderia mallei ATCC 23344] Length = 497 Score = 236 bits (601), Expect = 9e-60, Method: Compositional matrix adjust. Identities = 157/503 (31%), Positives = 249/503 (49%), Gaps = 42/503 (8%) Query: 1 MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHF 60 + ++ +++ +VW +DLR++D+ AL A S VI V++ E+ + + Sbjct: 12 LSSSISIAPAVVWFCDDLRVSDHPALMRAA-ESGRPVIGVYVFD-ERAGGRPLGGAARWW 69 Query: 61 IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120 ++ SL + +L+ G + D + S+ ++++R+Y + D Sbjct: 70 LHGSLRALGAALAALGGTLALLRGDEHDTIV----SFAAALGAGAVYWSRRYALAARAVD 125 Query: 121 KLLEKRLQHRVIC-KSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPV 179 ++ L + I ++F+ S+L PG ++N + Y+V++ + +A ++ R +P Sbjct: 126 NAVQTALDAQGIAVETFNASLLFEPGDLVNADGRPYQVFSAYWRAAMR-------RGVPA 178 Query: 180 PAI----RLTGPVTPSNIPR-FFDYPFQAIDPMFP-----------IGEQNALHILRKFC 223 P + RL G P+ + R ++P P GE A LR F Sbjct: 179 PPLGAPRRLNGGALPAALARQCVALDALGLEPTGPDWAGGLRDAWRFGEDAAHRRLRAFV 238 Query: 224 KEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLN 283 ++ Y +RD P I TS+LSPY+ G LS RQ W+ + + ++ +L+ Sbjct: 239 DSRLGGYAAERDRPGIASTSRLSPYVRFGNLSARQLWHAAADAYAHGAAT-QADLDKFLS 297 Query: 284 ELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQL 343 EL WREF + +P + + + + W D L AW++G TG+P +DA MR+L Sbjct: 298 ELGWREFGWTQLHHFPDLPR-RNLRHTLDGMPWRDDPAALAAWRRGATGYPFVDAGMREL 356 Query: 344 NTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSV 403 GWMHNR+RM+ ASFLVK LL+DWR GE +F L+D D ASN WQW A G D+ Sbjct: 357 WATGWMHNRVRMVCASFLVKHLLIDWRAGEAWFWDTLVDADAASNAANWQWVAGCGADAA 416 Query: 404 PYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND--------LSLN 455 PYFRIFNP QG++FDP G ++R W+PEL +P IH P W L Sbjct: 417 PYFRIFNPVAQGRKFDPDGAYVRRWVPELAGLPPATIHEP--WAAPGAQLAAAGVRLGET 474 Query: 456 YPLPIVDHKKACHHTLNQYYAAK 478 YPLPIV + A L+ + A + Sbjct: 475 YPLPIVAYDAARRRALDAFGAIR 497 >gi|149196503|ref|ZP_01873557.1| deoxyribodipyrimidine photolyase-class I [Lentisphaera araneosa HTCC2155] gi|149140183|gb|EDM28582.1| deoxyribodipyrimidine photolyase-class I [Lentisphaera araneosa HTCC2155] Length = 429 Score = 235 bits (600), Expect = 1e-59, Method: Compositional matrix adjust. Identities = 160/478 (33%), Positives = 243/478 (50%), Gaps = 57/478 (11%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQ-HGISARQSHFIYASLLQ 67 ++ W R DLR+ DN LYAA + KV +FI + ++ + + FI+ + + Sbjct: 2 INYFWFRRDLRLEDNCGLYAALEAGE-KVRPIFIFDTKILKKLTSKNDPRVSFIHQKIKE 60 Query: 68 VQKSLSQKGI--VFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125 + + KG ++ Y+ D W + LQ + ++ NR YE + RD +E+ Sbjct: 61 LDHQIKAKGGSGIWVYYG----DVKETWKE--ILQSQTGDVYCNRDYEPAAIDRDHEVEQ 114 Query: 126 RLQ-HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL 184 L+ H SF D V+ +L Y VYTP+RKA +L+ P + Sbjct: 115 ILRSHGQNLHSFKDQVIFEEDEVLKKDGTPYTVYTPYRKAW-------ELKFSP----EM 163 Query: 185 TGPVTPSNIPRFFDY-PFQAIDPMFPIG--EQNALHILRKFCKEKVYYYVEQRDIPAIQG 241 P PS++ +D P +AI + +G E+ A + + + Y RD PA+ Sbjct: 164 LKPF-PSDLKNNYDTSPSKAIPSLEEMGFEEKKAHEGNKNLNTQLLLNYSVDRDFPALNA 222 Query: 242 TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSV 301 TS LS L G +S R L ++ ++L ++L+ELIWREF+ ++ +P Sbjct: 223 TSLLSVQLRFGAISIRH----LAKQALNL-------DSTYLHELIWREFFMMILYHFPHS 271 Query: 302 CMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFL 361 + F ++ W D + W G TG+P++DA MR+LN G+MHNR+RM+TASFL Sbjct: 272 A-KQEFKEQYSRVPWRYDHEDFKRWCFGKTGYPLVDAGMRELNETGYMHNRVRMVTASFL 330 Query: 362 VKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQ 421 VK LL+DWR GEEYF +L+D D+++N G WQWAA G D+ PYFR+FNPT Q +RFD Q Sbjct: 331 VKHLLIDWRWGEEYFARKLMDYDMSANVGNWQWAAGCGCDAAPYFRVFNPTAQKERFDKQ 390 Query: 422 GTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479 +I+ W+PE N ++ YP P++DHK A + Y A K Sbjct: 391 EEYIKKWIPEYN-------------------TMLYPEPMIDHKFARERAIETYKKALK 429 >gi|163746389|ref|ZP_02153747.1| deoxyribodipyrimidine photolyase, putative [Oceanibulbus indolifex HEL-45] gi|161380274|gb|EDQ04685.1| deoxyribodipyrimidine photolyase, putative [Oceanibulbus indolifex HEL-45] Length = 473 Score = 235 bits (600), Expect = 1e-59, Method: Compositional matrix adjust. Identities = 162/489 (33%), Positives = 232/489 (47%), Gaps = 53/489 (10%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 +VW R DLR++D+ AL AAC VI +FI + + A + +L + Sbjct: 8 IVWFRRDLRLSDHPALAAACKTG-RPVIPLFIHDNQS---DALGAAPKFRLGLALACLGD 63 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130 +L +KG + D+++ L Q ++++R Y+ + RD ++ L+ Sbjct: 64 TLKEKGSRLILRRG----DALDVLRDVIEQTGAGAVYWSRLYDPAAIDRDTKVKDALKED 119 Query: 131 -VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189 V SF ++ P ++ YKV+TP+ K++ V L T Sbjct: 120 GVEACSFAGHLMFEPWTVETKTGGFYKVFTPYWKSVRGRDVAEPL-------------AT 166 Query: 190 PSNIPRFFDYP-----------------FQAIDPMFPIGEQNALHILRKFCKEKVYYYVE 232 PS I D+P + P +GE A L F + V Y E Sbjct: 167 PSEIRAPEDWPDSDVLDDWQMDAEMQRGRDVVRPYVRLGEAAAQARLGSFIADIVDGYDE 226 Query: 233 QRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYR 292 RD+P GTS LS LS+G +SP CW+ + + + K GA ++L EL WREF Sbjct: 227 SRDMPGEDGTSGLSENLSLGEISPAHCWHAGQR----AMQEGKRGAETFLKELAWREFAY 282 Query: 293 HLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQ--AWKQGYTGFPIIDAAMRQLNTIGWMH 350 HLM P + W + WN+D + AWKQG TG P +DAAMR+L G MH Sbjct: 283 HLMYHTPRILDQNWREEW-QAFPWNEDERCAEVLAWKQGRTGMPFVDAAMRELQVTGRMH 341 Query: 351 NRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFN 410 NR RMI AS+L K L+ WRIG+++F L+D D A+N GWQWAA +G D+ P+FRIFN Sbjct: 342 NRGRMIVASYLTKHLMCHWRIGQKWFEEHLIDWDPANNAMGWQWAAGSGPDATPFFRIFN 401 Query: 411 PTIQGKRFDPQGTFIRHWLPELNNVPT----QYIHA-PHSWLDKNDLSLNYPLPIVDHKK 465 P Q RFD + R W+ E P+ +Y A P W + D +YP PIVD + Sbjct: 402 PETQLDRFDKGRNYTRRWIAEGREKPSEDALEYFDAIPRRWGRRPD--DDYPDPIVDLSE 459 Query: 466 ACHHTLNQY 474 L+ Y Sbjct: 460 GRARALDAY 468 >gi|305666673|ref|YP_003862960.1| deoxyribodipyrimidine photolyase-class I [Maribacter sp. HTCC2170] gi|88707478|gb|EAQ99722.1| deoxyribodipyrimidine photolyase-class I [Maribacter sp. HTCC2170] Length = 436 Score = 235 bits (600), Expect = 1e-59, Method: Compositional matrix adjust. Identities = 153/475 (32%), Positives = 234/475 (49%), Gaps = 51/475 (10%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 + + W R DLR+ DN L A V+ +FI E Q + + +FIY ++ + Sbjct: 5 ISVFWFRRDLRLEDNTGLLKALQ-GPTPVLPIFIFDTEILCQVPKNDARVNFIYNTIETL 63 Query: 69 QKSLSQK--GIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 ++ +K + +H IE ++ + + +F N YE + ++RD +++ Sbjct: 64 NTNIKKKHKSSIAIFH-----GKPIEIFNTLIKKHTIDAVFANHDYEPHALKRDTAIKEL 118 Query: 127 LQHRVIC-KSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185 L + I ++ D V+ I+ Y VYTP++ +N + Sbjct: 119 LANNSISFHTYKDQVIFEKNEIIKSDKSPYVVYTPYKNKWKENFDPKIHLKNSSNCLESN 178 Query: 186 GPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYY--YVEQRDIP-AIQGT 242 V +N+P FF+ + IG +++ + +F + Y R+ P A GT Sbjct: 179 NFVNNTNLP-FFE--------LRDIGFESSSITVPEFIITITFIEGYETTRNYPGATNGT 229 Query: 243 SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVC 302 S++ P+L G +S R+ V I + F W NELIWREF+ ++ +P+ Sbjct: 230 SKIGPHLRFGTVSIRKI--------VKHAINSDNKVF-W-NELIWREFFMQILWHFPN-T 278 Query: 303 MGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLV 362 + F P ++IEW + + WK G TG+P++DA MR+LN G+MHNR+RM+TASFL Sbjct: 279 VNNAFRPKYDRIEWRNNEAEFEKWKTGQTGYPLVDAGMRELNATGFMHNRVRMLTASFLC 338 Query: 363 KDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQG 422 K LL+DWR GE YF +LLD DL++N G WQWAA +G D+ PYFRIFNP+ Q +FD Q Sbjct: 339 KHLLIDWRWGEAYFAEKLLDFDLSANVGNWQWAAGSGVDAAPYFRIFNPSTQIDKFDKQK 398 Query: 423 TFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477 T++ W+PEL NYP IVDHK A L Y A Sbjct: 399 TYVNQWVPELQ-------------------EFNYPTQIVDHKFARERCLKVYKEA 434 >gi|295134157|ref|YP_003584833.1| deoxyribodipyrimidine photo-lyase [Zunongwangia profunda SM-A87] gi|294982172|gb|ADF52637.1| deoxyribodipyrimidine photo-lyase [Zunongwangia profunda SM-A87] Length = 437 Score = 235 bits (600), Expect = 1e-59, Method: Compositional matrix adjust. Identities = 154/474 (32%), Positives = 232/474 (48%), Gaps = 51/474 (10%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 +++ W R DLR+ DN A+ + V+ +FI PE + FI+ +L + Sbjct: 6 INIFWFRRDLRLDDNVGFLASL-KEEHPVMPIFIFDPEILDNLPEDDARVTFIFETLQDM 64 Query: 69 QKSLSQK--GIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 + L + + YH + E L +Y L K+F NR YE RD+ ++K Sbjct: 65 RNELQENHHSSIGMYHGKPE-EVFKELLKNYSL----GKVFTNRDYEPYAKDRDEKIQKL 119 Query: 127 L-QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185 L ++ V ++F D V+ ++ Y VYTP+ K +++ +DL+ + + L Sbjct: 120 LDENNVKFETFKDQVIFEKDEVVKGDGDPYVVYTPYMKTWMEHFKNSDLK-IHYTSQFLD 178 Query: 186 GPVTPSNIPRFF--DYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS 243 V + +P D F+ P + I R Y + R+IP+ +GTS Sbjct: 179 NLVQNTRLPNLSLSDIGFKKSSLKVPDFDTTPSLIQR---------YEDTRNIPSKEGTS 229 Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCM 303 +L P+L G +S R+ + E K+ F L EL+WREF+ ++ PS Sbjct: 230 RLGPHLRFGTVSVRKMVKKANNE--------KNKTF--LQELVWREFFMQVLYHNPSTVT 279 Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363 F + I+W + + WK G TGFP++DA MRQLN G+MHNR+RM+ SFL K Sbjct: 280 D-AFKKKYDNIQWRNNKEEFEKWKNGKTGFPLVDAGMRQLNKSGFMHNRVRMLVGSFLCK 338 Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423 LL+DWR GE YF +LLD +++SN G WQW A +G D+VPYFRIFNPT Q +FD Sbjct: 339 HLLIDWRWGEAYFAEKLLDYEMSSNVGNWQWVAGSGVDAVPYFRIFNPTTQIDKFDKDKK 398 Query: 424 FIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477 +I+ W+ E S +YP +VDHK+A L+ Y A Sbjct: 399 YIKEWVEEFG-------------------SDDYPDKMVDHKEARERALSTYKEA 433 >gi|167628126|ref|YP_001678626.1| deoxyribodipyrimidine photo-lyase [Francisella philomiragia subsp. philomiragia ATCC 25017] gi|167598127|gb|ABZ88125.1| Deoxyribodipyrimidine photo-lyase [Francisella philomiragia subsp. philomiragia ATCC 25017] Length = 464 Score = 235 bits (600), Expect = 1e-59, Method: Compositional matrix adjust. Identities = 163/487 (33%), Positives = 248/487 (50%), Gaps = 56/487 (11%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 +++H W R DLR+ DN AL+ A + I +FI Q I +++ SL Sbjct: 5 IAIH--WFRQDLRLADNPALHQASQADE--TITIFILDENQ----EIGGASKLWLHHSLS 56 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 + KSL+ K F + +E + + +T ++NR Y+ + RD +++ Sbjct: 57 SLSKSLNNKLNFFS-------GNPLEIIKKLVKENNITDFYWNRCYDKYSIDRDTQIKQF 109 Query: 127 LQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQ------NLVQADLRSL-- 177 LQ + I SF+ S+L+ P YKVYTPF K LI+ N+V+ SL Sbjct: 110 LQEQDINVSSFNGSLLIEPWQCKKDDGTHYKVYTPFYKELIKIRKYRSNIVKPSFNSLKK 169 Query: 178 -----PVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVE 232 + +++L P +Q I + IGE + IL +F KV Y Sbjct: 170 LETADELDSLKLLEP----------KLSWQNIIDQWQIGEDASHQILEEFLDGKVKEYKI 219 Query: 233 QRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYR 292 RD + TS+LSPYL G +SP Q +N ++ +D + + ++ EL+WR+F Sbjct: 220 ARDFMSTDSTSKLSPYLHFGEISPNQIFNAVQS--LDYI---GNNEEHFIKELVWRDFSY 274 Query: 293 HLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNR 352 + + +YP + K + EW+ D+ LL+ W+ G TG PI+DA MR+L G+MHNR Sbjct: 275 YQIYYYPEL-HNKNINQKFDSFEWDNDATLLKRWQTGQTGIPIVDAGMRELWQTGYMHNR 333 Query: 353 LRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPT 412 +RMI ASFL+K+ L+ W+ GE++F L D D ASNN WQW A G D+ PYFRIFNP Sbjct: 334 VRMIVASFLIKNCLIHWKYGEKWFFDTLFDADFASNNANWQWVAGCGLDAAPYFRIFNPV 393 Query: 413 IQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKN--------DLSLNYPLPIVDHK 464 +Q ++F+ +IR ++PEL +P + + P W N L NYP P++D K Sbjct: 394 LQAEKFEAY-EYIRKYVPELKLLPNKLLAKP--WEASNLVLQESGVKLGDNYPTPLIDLK 450 Query: 465 KACHHTL 471 K+ L Sbjct: 451 KSRDKAL 457 >gi|241668656|ref|ZP_04756234.1| deoxyribodipyrimidine photo-lyase [Francisella philomiragia subsp. philomiragia ATCC 25015] gi|254877189|ref|ZP_05249899.1| deoxyribodipyrimidine photolyase [Francisella philomiragia subsp. philomiragia ATCC 25015] gi|254843210|gb|EET21624.1| deoxyribodipyrimidine photolyase [Francisella philomiragia subsp. philomiragia ATCC 25015] Length = 464 Score = 235 bits (599), Expect = 1e-59, Method: Compositional matrix adjust. Identities = 164/488 (33%), Positives = 251/488 (51%), Gaps = 58/488 (11%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 +++H W R DLR+ DN AL+ A + I +FI Q I +++ SL Sbjct: 5 IAIH--WFRQDLRLADNPALHQASQADE--TITIFILDENQ----EIGGASKLWLHHSLS 56 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 + KSL+ K F + +E + + +T ++NR Y+ + RD +++ Sbjct: 57 SLSKSLNNKLNFFS-------GNPLEIIKKLVKENNITDFYWNRCYDKYSIDRDTQIKQF 109 Query: 127 LQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQ------NLVQADLRSL-- 177 LQ + I SF+ S+L+ P YKVYTPF K LI+ N+V+ SL Sbjct: 110 LQEQDINVSSFNGSLLIEPWQCKKDDGTHYKVYTPFYKELIKIRKYRSNIVKPSFNSLKK 169 Query: 178 -----PVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVE 232 + +++L P +Q I + IGE + IL +F KV Y Sbjct: 170 LETADELDSLKLLEP----------KLSWQNIIDQWQIGEDASHQILEEFLDGKVKEYKI 219 Query: 233 QRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYR 292 RD + TS+LSPYL G +SP Q +N ++ +D + + ++ EL+WR+F Sbjct: 220 ARDFMSTDSTSKLSPYLHFGEISPNQIFNAVQS--LDYI---GNNEEHFIKELVWRDFSY 274 Query: 293 HLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNR 352 + + +YP + K + EW+ D+ LL+ W+ G TG PI+DA MR+L G+MHNR Sbjct: 275 YQIYYYPEL-HNKNINQKFDSFEWDNDATLLKRWQTGQTGIPIVDAGMRELWQTGYMHNR 333 Query: 353 LRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPT 412 +RMI ASFL+K+ L+ W+ GE++F L D D ASNN WQW A G D+ PYFRIFNP Sbjct: 334 VRMIVASFLIKNCLIHWKYGEKWFFDTLFDADFASNNANWQWVAGCGLDAAPYFRIFNPV 393 Query: 413 IQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSL---------NYPLPIVDH 463 +Q ++F+ +IR ++PEL +P + I P W + ++L L NYP P++D Sbjct: 394 LQAEKFEAY-EYIRKYVPELKFLPNKLIAKP--W-EASELVLQEAGVKLGDNYPTPVIDL 449 Query: 464 KKACHHTL 471 KK+ L Sbjct: 450 KKSRDKAL 457 >gi|206560613|ref|YP_002231378.1| putative DNA photolyase [Burkholderia cenocepacia J2315] gi|198036655|emb|CAR52553.1| putative DNA photolyase [Burkholderia cenocepacia J2315] Length = 494 Score = 235 bits (599), Expect = 2e-59, Method: Compositional matrix adjust. Identities = 152/484 (31%), Positives = 236/484 (48%), Gaps = 31/484 (6%) Query: 1 MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHF 60 + A ++++ +VW R+DLR+TD AL A S ++ VF+ + + Sbjct: 3 VPAQSSVAPAIVWFRDDLRVTDQPALTLAVE-SGRPLVCVFVDDTGAGAGPALGGAARWW 61 Query: 61 IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120 ++ SL + +L++ G + D+ ++ +++NR+Y + D Sbjct: 62 LHGSLAGLDAALARHGGRLLLLRG----DAQREIERLVRDTGAAAVYWNRRYAQPQRDAD 117 Query: 121 KLLEKRLQHR-VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPV 179 L+ L+ R V +S + S+L P +L + Y+V+T +A LP Sbjct: 118 AALKTSLKARGVAVESSNGSLLNEPWEVLTGSGGPYQVFT--AYWRAARRDRAVAAPLPA 175 Query: 180 PA------------IRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKV 227 P R + P D+ D E A L F + Sbjct: 176 PGQIVFHSWPKAVRDRALALDALALRPHAPDWAGGLRDAWPAPDEAGAHAQLDAFLTTSL 235 Query: 228 YYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIW 287 Y + RD P TS+LSP+L G +SPRQ W+ ++ + A +L+EL W Sbjct: 236 AGYADARDRPDRPATSRLSPFLRFGNVSPRQVWHAVQGAASAGGAAYAADADKFLSELGW 295 Query: 288 REFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIG 347 REF L+ +P++ F + + W D L+AW++G TG+P++DA +R+L T G Sbjct: 296 REFSYTLLYHFPTLATDN-FRAQFDAMPWRDDPAALRAWQRGRTGYPLVDAGLRELWTTG 354 Query: 348 WMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFR 407 WMHNR+RM+ ASFL+K LL+DWR GE +F L+D D A+N WQW A G D+ PYFR Sbjct: 355 WMHNRVRMVVASFLIKHLLIDWRAGEAWFRDTLVDADPANNAASWQWVAGCGADAAPYFR 414 Query: 408 IFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSW------LDKND--LSLNYPLP 459 IFNP QG++FDP G ++R W+PEL + IHAP W L+ L ++YP P Sbjct: 415 IFNPVAQGQKFDPDGAYVRRWVPELAGLDDASIHAP--WEASPLALEAAGIRLGIDYPAP 472 Query: 460 IVDH 463 +V+H Sbjct: 473 LVEH 476 >gi|254577919|ref|XP_002494946.1| ZYRO0A13530p [Zygosaccharomyces rouxii] gi|238937835|emb|CAR26013.1| ZYRO0A13530p [Zygosaccharomyces rouxii] Length = 582 Score = 234 bits (598), Expect = 2e-59, Method: Compositional matrix adjust. Identities = 159/496 (32%), Positives = 245/496 (49%), Gaps = 32/496 (6%) Query: 2 KATTAMSVHLVWLRNDLRITDNKALYAAC---HNSDAKVIAVFIATPEQWRQHGISARQS 58 KA + W R DLRI+DN AL A +++++VF W H S + Sbjct: 88 KADVEAKTVIHWFREDLRISDNTALCKAIEKQQTDKSQLVSVFTINKHDWIAHLDSNFRL 147 Query: 59 HFIYASLLQVQKSLSQKGI---VFQYH----QCSNFDDSIEWLDSYCLQQRVTK---LFY 108 F+Y +L + K+L + I V +++ SN W CL+ K L Sbjct: 148 TFLYNALKSLHKALLELSIPLYVIEFNPEEPTLSNSTTFAHWFKDQCLRLSKGKPLFLTA 207 Query: 109 NRQYEINEVRRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQN 168 N +Y +E+ RD + R F D+ ++ P Y V++P+ K + Sbjct: 208 NAEYPTDELYRDIKIFGTTDERFQFNVFHDTCIVEPCIFKTQQNIQYSVFSPWYKKWCAH 267 Query: 169 LVQAD-----LRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFC 223 L+ + + V I+ ++ F A + E+ A+ LRK+ Sbjct: 268 LMDKKPNDSLVATSQVKKIQYNEKAFLPDLDFQLPAEFTAQGNVAEASEEAAISRLRKYL 327 Query: 224 KEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRL-----KEEFVDLLIKPKSGA 278 ++ + Y E +DI + +S +S YLS+GV+S R N ++ V K Sbjct: 328 EDGIDKYPE-KDILIHESSSHMSAYLSVGVISARTVVNEAFHLVPGDKLVGKSPKDMIPM 386 Query: 279 FSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDA 338 ++ E+ WR+FY+H M+F+P + M PF +E ++W + + W G TG P+IDA Sbjct: 387 EEFIREVAWRDFYKHTMSFWPYLSMDLPFNLASENMKWINEEPNFEKWCYGKTGVPVIDA 446 Query: 339 AMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAAST 398 MR+L G+++NR RMITASFL K+LL+DWR GE +F ++L+D DLASN GGW + +ST Sbjct: 447 IMRKLLLEGYINNRARMITASFLSKNLLIDWRWGERWFRNRLIDCDLASNVGGWGFLSST 506 Query: 399 GNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPL 458 G D+ PYFR+FN Q + FDP G FI+ W+PEL + H HS + K + +YP Sbjct: 507 GVDAQPYFRVFNMERQSQAFDPDGEFIKRWVPELKDA-----HNVHSLVQK---AKSYPE 558 Query: 459 PIVDHKKACHHTLNQY 474 IVD K + L+ Y Sbjct: 559 AIVDLKGSRQRALDTY 574 >gi|146303224|ref|YP_001190540.1| deoxyribodipyrimidine photo-lyase type I [Metallosphaera sedula DSM 5348] gi|145701474|gb|ABP94616.1| deoxyribodipyrimidine photo-lyase type I [Metallosphaera sedula DSM 5348] Length = 435 Score = 234 bits (598), Expect = 2e-59, Method: Compositional matrix adjust. Identities = 157/466 (33%), Positives = 236/466 (50%), Gaps = 55/466 (11%) Query: 14 LRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGI-SARQSHFIYASLLQVQKSL 72 R DLR+ DN L A D +V+ VF+ P Q + SA F+ SLL + L Sbjct: 7 FRRDLRLDDNTCLLRALQECD-EVVPVFVLDPRQLGDNPYKSAFALGFMVDSLLDLDMQL 65 Query: 73 SQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHRVI 132 H+ S + + + +V +++N Y + RD + + ++ RV Sbjct: 66 K--------HRSSRLHILQGYPEKVLPELKVEAIYFNEDYTPFSLNRDNAIRETMRGRV- 116 Query: 133 CKSFDDSVLLPPGSILNHALQMYKVYTPF----RKALIQNLVQADLRSLPVPAIRLTGPV 188 KS +D +LL P + Y V+T F RK ++ ++ D+R+ LT + Sbjct: 117 -KSCED-LLLTPKDFFVRKGKPYTVFTHFYNDARKLEVRKPMKNDMRNY------LTLDL 168 Query: 189 TPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPY 248 + + + ++ P G Q L L + + Y R+ P ++GT++LSPY Sbjct: 169 PGTEVLKL------EVERGIPGGRQEGLKRLER--ARNLNY--SMRNFPGVEGTTKLSPY 218 Query: 249 LSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFI 308 + GV+SPR+ + + EE +L WR+FY L+A+Y G + Sbjct: 219 IKFGVVSPREVYWAVNEEI--------------RRQLYWRDFY-TLLAYYNPHVFGHSYK 263 Query: 309 PWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVD 368 + I W + L+AWKQG TG+PI+DA MR+LN G+MHNR RMITASFLVK L VD Sbjct: 264 REYDCIPWKWNEAHLEAWKQGKTGYPIVDAGMRELNETGFMHNRTRMITASFLVKVLHVD 323 Query: 369 WRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHW 428 WRIGE YF ++L+D D + NNG WQW ASTG D + FR+FNP +Q ++FDP +I+ W Sbjct: 324 WRIGERYFATKLVDYDPSVNNGNWQWVASTGADYM--FRVFNPWLQQRKFDPDAVYIKTW 381 Query: 429 LPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQY 474 +PEL ++P + IH + + YP PIVD+ + Y Sbjct: 382 VPELKDLPAEKIHEIYRF-----KVSGYPSPIVDYSEEVKKARKMY 422 >gi|218516572|ref|ZP_03513412.1| deoxyribodipyrimidine photo-lyase protein [Rhizobium etli 8C-3] Length = 277 Score = 234 bits (598), Expect = 2e-59, Method: Compositional matrix adjust. Identities = 119/280 (42%), Positives = 164/280 (58%), Gaps = 16/280 (5%) Query: 211 GEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDL 270 GE+ A LR F ++++ Y E RD PA TS LSP+L++G +SP + W+ + L Sbjct: 5 GEEGAQEKLRTFIEDRLDGYKENRDYPAKPATSMLSPHLALGEISPARIWDATRGLSKHL 64 Query: 271 LIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKI---EWNKDSHLLQAWK 327 P + + E+ WR+F HL+A +P + W ++ EW AW Sbjct: 65 ---PAADIVHFRKEIAWRDFSYHLLAHFPRLATAN----WEDRFDRFEWGSAEEDFNAWS 117 Query: 328 QGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLAS 387 +G TG+PI+DA MRQL GWMHNR+RMI ASFL+KDL+VDWR GE +F L+D D A+ Sbjct: 118 RGMTGYPIVDAGMRQLWRYGWMHNRVRMIAASFLIKDLMVDWRHGEAWFRDTLVDADPAN 177 Query: 388 NNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIH----AP 443 N WQW A +G D+ P+FR+FNP +QG++FDP G F+R +PEL + +YIH AP Sbjct: 178 NAASWQWVAGSGADASPFFRVFNPVLQGEKFDPDGDFVRSHVPELRKLDAKYIHRPFEAP 237 Query: 444 HSWLDKNDLSLN--YPLPIVDHKKACHHTLNQYYAAKKQS 481 S LD D+ L YP P+VDH A L Y A + + Sbjct: 238 KSVLDAADVILGETYPEPVVDHAGARKRALAAYNAIRGAA 277 >gi|94498268|ref|ZP_01304828.1| Deoxyribodipyrimidine photolyase [Sphingomonas sp. SKA58] gi|94422270|gb|EAT07311.1| Deoxyribodipyrimidine photolyase [Sphingomonas sp. SKA58] Length = 458 Score = 234 bits (598), Expect = 2e-59, Method: Compositional matrix adjust. Identities = 163/481 (33%), Positives = 241/481 (50%), Gaps = 50/481 (10%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFI---ATPEQWRQHGISARQSHFIYASLLQ 67 L+W R DLR++D AL AA S+ V+ V++ TP QW G S +++ SL Sbjct: 6 LLWFRQDLRLSDQAALIAAA--SEGPVVPVYVLDDDTPRQWVMGGAS---RWWLHHSLAS 60 Query: 68 VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127 + ++L +KG + + D ++ L C RV L + + N +K + K L Sbjct: 61 LDRALREKGSRLTLRRGKSAD-VLQALAKECGAGRVHALHHYEPWWRNA---EKAVAKAL 116 Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187 +C D +LLPPG++ + +YK+YTPF +A+++ + A P + P Sbjct: 117 D---LCL-HDGILLLPPGAVRTGSGGIYKIYTPFARAVMEQMPPAAPNRTPA---TIDAP 169 Query: 188 VTPSNIPRFFDYPFQAIDPMFPIG--------EQNALHILRKFCKEKVYYYVEQRDIPAI 239 + R D+ P + G E A + F E V Y R++P++ Sbjct: 170 ESWPETDRLSDWGLLPTKPDWAGGFKKDWTPGEDGARANVAAFIDE-VGDYPTGRNLPSV 228 Query: 240 QGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHL----M 295 +GTS+LSP+L G +SP W+R+ D I +L ELIWR+ Y H M Sbjct: 229 EGTSRLSPHLHYGEVSPAYVWHRVTASNADAEI--------FLKELIWRD-YTHTQICEM 279 Query: 296 AFYPSVCMGKPF--IPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRL 353 Y S F + W + E D AWK+G TG+PI+DA MRQL T GWMHNR+ Sbjct: 280 PAYGSKNARDDFDRMDWRDLREARGD---FVAWKKGRTGYPIVDAGMRQLWTTGWMHNRV 336 Query: 354 RMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTI 413 RMI ASFL+K LL+DWR G ++F L+D D A+N+ WQW A +G D+ + RI P Sbjct: 337 RMIAASFLIKHLLIDWRHGAKWFWDTLVDADYANNSVNWQWVAGSGIDANMFSRIMAPLT 396 Query: 414 QGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQ 473 Q ++FD G +IR W+PEL + + IH P + + D +YP I+ H+ L Sbjct: 397 QSEKFD-AGDYIRQWVPELAALSNEVIHDPDAHDARPD---DYPAKIIGHRAGRERALAA 452 Query: 474 Y 474 Y Sbjct: 453 Y 453 >gi|169595114|ref|XP_001790981.1| hypothetical protein SNOG_00291 [Phaeosphaeria nodorum SN15] gi|160701021|gb|EAT91786.2| hypothetical protein SNOG_00291 [Phaeosphaeria nodorum SN15] Length = 534 Score = 234 bits (597), Expect = 2e-59, Method: Compositional matrix adjust. Identities = 159/495 (32%), Positives = 240/495 (48%), Gaps = 62/495 (12%) Query: 17 DLRITDNKALYAACHNSDAK---VIAVFI--ATPEQWRQHGISARQSHFIYASLLQVQKS 71 DLRI DN AL+ A + +K ++ V++ A E W HG S + F+ L +QK Sbjct: 56 DLRIQDNTALHHASELAQSKKKPLVGVYVNCAADESW--HGTSPARVDFMCEGLKIMQKE 113 Query: 72 LSQKGIVFQYHQCSN----FDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127 L I + +C + IEWL Q+V+ +F N +YEI+E+RRD L K++ Sbjct: 114 LKDLNIPLVFLECEDRKKIVPTVIEWLKG----QKVSHVFGNYEYEIDELRRDIKLVKQV 169 Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQAD--LRSLPVPAIRLT 185 + D ++ PG++L A + KV+TP+ K + L + L + P PA Sbjct: 170 GGGIQVSLHHDQTVIEPGTMLTGAGKPMKVFTPYHKQWLAILKEQPELLDTSPAPA---- 225 Query: 186 GPVTPSNIPR----FFDYPF---------------QAIDPMFPIGEQNALHILRKFCKEK 226 PS++ + FD P + I ++P G A + F K Sbjct: 226 --ANPSSMKKELKDLFDTPAPKPAADKQFSSDEEKKRIRKLWPAGHAAASKRMDAFLK-T 282 Query: 227 VYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQC------WNRLKEEFVDLLIKPKSGAFS 280 + Y R PA TS+LS Y S G+ S R +N +F + +P G + Sbjct: 283 IDSYAATRSNPAKDSTSRLSAYFSAGMFSVRSALQKVADYNHGSTDFTESSARP--GVYG 340 Query: 281 WLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAM 340 W+ E+++RE YR P M P + ++W D + W +G TG P IDA M Sbjct: 341 WVREIVFRELYRQTTLTTPHTSMNMPQNLKFDFVQWEDDEEGWEKWYKGETGEPFIDAGM 400 Query: 341 RQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGN 400 RQLN +MHNRLRM +S+L +LL+D+R GE YF L+D DL++N GW+ Sbjct: 401 RQLNHEAYMHNRLRMNVSSYLYCNLLLDYRRGERYFAETLIDWDLSNNTQGWE------- 453 Query: 401 DSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLS-LNYPLP 459 P + +FNP Q +R DP G +IR W+PEL +V + + AP++ L K + L YP P Sbjct: 454 ---PSYTVFNPVSQAERNDPDGDYIRKWVPELKDVQGKAVFAPYARLSKAEFEKLGYPKP 510 Query: 460 IVDHKKACHHTLNQY 474 VD K+ + ++ Sbjct: 511 HVDWKQTKQRCMERF 525 >gi|289662993|ref|ZP_06484574.1| photolyase [Xanthomonas campestris pv. vasculorum NCPPB702] Length = 484 Score = 234 bits (597), Expect = 2e-59, Method: Compositional matrix adjust. Identities = 164/489 (33%), Positives = 241/489 (49%), Gaps = 23/489 (4%) Query: 1 MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHF 60 ++ MS +VW R DLR+ DN AL AA ++ I ++I + + A + Sbjct: 7 VRCRVCMSYAIVWFRRDLRLEDNPALRAAL-DAGHHPIPLYIDALHEEGEWTPGAASRTW 65 Query: 61 IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120 + SL + +L +G DS + LD Q +++NR+YE RD Sbjct: 66 RHRSLAALDDALRARGSGL----VIRAGDSAQVLDEVIAQTGAVAVYWNRKYEPATQPRD 121 Query: 121 KLLEKRLQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPF-RKALIQNLVQADL---R 175 +++ L+ R I +S + ++L P + YKV+TPF R AL Q + A + R Sbjct: 122 AQIKRALRERGIEAQSCNSALLFEPWQLSTQQGGPYKVFTPFWRNALTQLQLPAAVPAPR 181 Query: 176 SLP-VPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQR 234 SLP +PA T + + ++ Q + GE A +L F + Y E R Sbjct: 182 SLPPLPAALKTDALDTLQLVSSLNWD-QGFWEHWQPGEAGAHEMLEIFIDGALSGYRENR 240 Query: 235 DIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHL 294 D P GTSQLSP+L G ++P + + L+ G ++ +L WR+F +L Sbjct: 241 DRPDRVGTSQLSPHLHFGEIAPWRIASTLEAHRTARNCAEIDG---YIRQLGWRDFAYYL 297 Query: 295 MAFYPSVCMGKPFIPWTEKIEWNK-DSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRL 353 + +P + P E +W K D L AW++G TG PI+DA MRQL GWMHNR+ Sbjct: 298 LHHFPDTT-NQNLNPRFEGFDWAKVDPVALHAWQRGRTGIPIVDAGMRQLWHTGWMHNRV 356 Query: 354 RMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTI 413 RMI ASFL K L + W G +F L+D DLA+N GWQW A TG D+ PYFR+FNP Sbjct: 357 RMIVASFLCKHLRIHWIEGARWFWDTLVDADLANNTLGWQWVAGTGADAAPYFRVFNPVT 416 Query: 414 QGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSL---NYP-LPIVDHKKACHH 469 Q ++FDPQ T+I W+PEL + + AP WL L+ YP P++ + Sbjct: 417 QAEKFDPQATYITRWVPELGKLAVKERFAP--WLHPLSLARFAPEYPRTPVIGLAEGRDA 474 Query: 470 TLNQYYAAK 478 L Y ++ Sbjct: 475 ALAAYAKSR 483 >gi|42523667|ref|NP_969047.1| deoxyribodipyrimidine photolyase-class I [Bdellovibrio bacteriovorus HD100] gi|39575874|emb|CAE80040.1| deoxyribodipyrimidine photolyase-class I [Bdellovibrio bacteriovorus HD100] Length = 435 Score = 234 bits (596), Expect = 3e-59, Method: Compositional matrix adjust. Identities = 157/473 (33%), Positives = 229/473 (48%), Gaps = 54/473 (11%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISA-RQSHFIYASLLQ 67 V L W R DLR+ DN LY A A V+ +FI E A + FIY + Sbjct: 4 VTLFWFRRDLRLDDNAGLYHALKERSA-VLPLFIFDSEILENLDDPADARVTFIYEQIQD 62 Query: 68 VQKSLSQK--GIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD-KLLE 124 +++ L+ K ++ ++ + +E L + + V ++ N YE +RD K+ Sbjct: 63 MKQQLNAKKSDLIVRHGK------PLEVLKTLSDEMAVEAIYANHDYEPAARKRDEKVAA 116 Query: 125 KRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL 184 + + +F D L IL A + Y VYTP+R ++ NL + L+S P Sbjct: 117 WAAKAGIEFLTFKDQCLFEKDEILTDARKPYTVYTPYRNKVLANLSEFYLKSYPNDLYES 176 Query: 185 TGPVTPSNIP--RFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ-G 241 + P F+ + FP + + K K Y RD PA + G Sbjct: 177 SYAKVKKAEPLLTLKSLGFERSNIEFP-----PMDLSTKMLKT----YHATRDFPADEKG 227 Query: 242 TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSV 301 TS L +L G LS R+ L + K + WL+ELIWR+F+ ++ +P V Sbjct: 228 TSHLGLHLRFGTLSVRE-----------LAREAKKYSPVWLSELIWRDFFMQILWHFPQV 276 Query: 302 CMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFL 361 + F P +KI W K Q W +G TG+P++DA MR+LN G+MHNR+RM+ ASFL Sbjct: 277 -ENQSFRPEYDKIAWRKSKADFQKWCEGRTGYPLVDAGMRELNATGYMHNRVRMVVASFL 335 Query: 362 VKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQ 421 K LL+ W GE YF +LLD DL++NNG WQWAA +G D+ PYFRIFNP Q ++FDP Sbjct: 336 CKHLLIHWYEGERYFAKKLLDYDLSANNGNWQWAAGSGCDAAPYFRIFNPQTQFEKFDPD 395 Query: 422 GTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQY 474 G +++ W+PE + YP P+VDH +A L + Sbjct: 396 GKYVQKWVPEYG-------------------TDEYPQPMVDHNEARGRCLQAF 429 >gi|325923198|ref|ZP_08184882.1| deoxyribodipyrimidine photo-lyase type I [Xanthomonas gardneri ATCC 19865] gi|325546322|gb|EGD17492.1| deoxyribodipyrimidine photo-lyase type I [Xanthomonas gardneri ATCC 19865] Length = 472 Score = 234 bits (596), Expect = 3e-59, Method: Compositional matrix adjust. Identities = 165/481 (34%), Positives = 239/481 (49%), Gaps = 27/481 (5%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQ--HGISARQSHFIYAS 64 MS +VW R DLR+ DN AL AA A I ++I P + + G ++R + Sbjct: 1 MSYAIVWFRRDLRLQDNPALRAALDAGHAP-IPLYIDAPHEEGEWAPGAASRSWRHRSLA 59 Query: 65 LLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLE 124 L G+V + DS + LD Q +++NR+YE RD ++ Sbjct: 60 ALDAALRALGSGLVIRA------GDSAQVLDEMIEQTGAVAVYWNRKYEPATQPRDAQIK 113 Query: 125 KRLQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPF-RKALIQNLVQADL---RSLP- 178 + L+ R I +S + ++L+ P + YKV+TP+ R AL Q + A + RSLP Sbjct: 114 RSLRERGIEVQSCNAALLMEPWQLSTQQGGPYKVFTPYWRNALTQLQLPAAVAAPRSLPA 173 Query: 179 VPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPA 238 +PA + + + D+ Q + GE A +L F + Y E RD P Sbjct: 174 LPATLKSAALETLGLVPKLDWD-QGFWEHWQPGEAGAHEMLEIFIDGALSGYRENRDRPD 232 Query: 239 IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFY 298 GTSQLSP+L G ++P + + L+ + + + ++ +L WR+F HL+ + Sbjct: 233 RVGTSQLSPHLHFGEIAPWRIASTLE---ANRNARNSAEIDGYIRQLGWRDFAYHLLHHF 289 Query: 299 PSVCMGKPFIPWTEKIEWNK-DSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMIT 357 P + P E +W K D LQAW++G TG PI+DA MRQL GWMHNR+RMI Sbjct: 290 PDTT-NQNLNPRFEGFDWAKVDPVALQAWQRGRTGIPIVDAGMRQLWHTGWMHNRVRMIV 348 Query: 358 ASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKR 417 AS L K L + W G +F L+D DLA+N GWQW A TG D+ PYFR+FNP Q ++ Sbjct: 349 ASLLCKHLRIHWIEGARWFWETLVDADLANNTLGWQWVAGTGADAAPYFRVFNPVTQAEK 408 Query: 418 FDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSL---NYP-LPIVDHKKACHHTLNQ 473 FDPQ +I W+PEL + + AP WL L+ YP PI+ + L Sbjct: 409 FDPQAAYITRWVPELGKLAVKERFAP--WLSPLSLARFAPKYPRTPIIGLAEGRDAALAA 466 Query: 474 Y 474 Y Sbjct: 467 Y 467 >gi|284033744|ref|YP_003383675.1| deoxyribodipyrimidine photo-lyase [Kribbella flavida DSM 17836] gi|283813037|gb|ADB34876.1| Deoxyribodipyrimidine photo-lyase [Kribbella flavida DSM 17836] Length = 437 Score = 234 bits (596), Expect = 3e-59, Method: Compositional matrix adjust. Identities = 151/471 (32%), Positives = 226/471 (47%), Gaps = 44/471 (9%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 ++W R DLR+ DN AL A D +V VF+ P W G R SL + Sbjct: 4 VMWFRRDLRLADNPALLDAVAAGDGRVAGVFVLDPALWDAAGDPRRAQLLS--SLRSLSA 61 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130 ++ K +V + D + + + Y VRRD+ +E L Sbjct: 62 AMDGKLVVRR-------GDPATVIPELAAELGAASVHVTTDYGPYGVRRDQAVENALSCP 114 Query: 131 VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTP 190 ++ +V PG ILN + Y+V+TP+ +A +++ G P Sbjct: 115 LVATGSPYAVA--PGRILNGQGRSYQVFTPYFRAWLEH-----------------GWRQP 155 Query: 191 SNIPRFFDYPFQAIDPMFPIG--EQNALHILRKFCKE---KVYYYVEQRDIPAIQGTSQL 245 + P ++ D + G E R+ + V Y ++R+ P + TS++ Sbjct: 156 AEAPATIEWIAARGDALPAAGTIEGAGEVAAREHWTQWLASVGQYDDERNRPDLDSTSRM 215 Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305 S L G + PR DL P +GA ++ EL WR+F L+A YP K Sbjct: 216 SVPLKYGEIHPRTM-------LTDLARHPGAGADAYRRELAWRDFCADLLARYPQAAW-K 267 Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365 P P E++ +++ AW +G TG+PI+DA MRQL G++HNR+RM+ ASFLVKDL Sbjct: 268 PLRPEFERMVYDEPGDAFTAWCEGRTGYPIVDAGMRQLAASGFVHNRIRMVVASFLVKDL 327 Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425 V W+ G +FM++L DGDLASN+ WQW A G D PY+R+FNP QG +FDP G+++ Sbjct: 328 HVHWKYGARWFMARLRDGDLASNSLNWQWVAGCGADPSPYYRVFNPITQGLKFDPDGSYV 387 Query: 426 RHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYA 476 R W+PEL ++P + +H P IVDH +A +L +Y A Sbjct: 388 RRWVPELADLPGKSVHEPWKLAAPPAGYPAP---IVDHAEARLESLRRYDA 435 >gi|21242230|ref|NP_641812.1| photolyase [Xanthomonas axonopodis pv. citri str. 306] gi|21107653|gb|AAM36348.1| photolyase [Xanthomonas axonopodis pv. citri str. 306] Length = 484 Score = 234 bits (596), Expect = 3e-59, Method: Compositional matrix adjust. Identities = 169/484 (34%), Positives = 241/484 (49%), Gaps = 33/484 (6%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQ---WRQHGISARQSHFIYA 63 MS +VW R DLR+ DN AL AA ++ I ++I P + W S H A Sbjct: 13 MSYAIVWFRRDLRLEDNPALRAAL-DAGHHPIPLYIDAPHEEGEWTPGAASRTWRHRSLA 71 Query: 64 SLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLL 123 +L ++L G+V + +S + LD Q +++NR+YE RD + Sbjct: 72 ALDGALRALG-SGLVIR------VGNSAQVLDEVIAQTGAVAVYWNRKYEPATQPRDAQI 124 Query: 124 EKRLQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPF-RKALIQNLVQADL---RSLP 178 ++ L+ R I +S + ++L P + YKV+TPF R AL Q + A + RSLP Sbjct: 125 KRDLRERGIEVQSCNCALLFEPWQLSTQQGGPYKVFTPFWRNALTQLQLPAAIGAPRSLP 184 Query: 179 -VPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIP 237 +PA T + + + Q + GE A +L F + Y E RD P Sbjct: 185 PLPASLKTDALDTLQLVPGLQWD-QGFWEHWQPGEAGAHEMLEIFIDGALSGYRENRDRP 243 Query: 238 AIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAF--SWLNELIWREFYRHLM 295 GTSQLSP+L G ++P + N L+ ++GA +++ +L WR+F HL+ Sbjct: 244 DRVGTSQLSPHLHFGEIAPWRIANTLETHRT-----ARNGAEIDAYIRQLGWRDFAYHLL 298 Query: 296 AFYPSVCMGKPFIPWTEKIEWNK-DSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLR 354 +P + P +W D LQAW++G TG PI+DA MRQL GWMHNR+R Sbjct: 299 HHFPDTT-NQNLNPRFAGFDWATVDPVALQAWQRGRTGIPIVDAGMRQLWHTGWMHNRVR 357 Query: 355 MITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQ 414 MI ASFL K L + W G +F L+D DLA+N GWQW A TG D+ PYFR+FNP Q Sbjct: 358 MIVASFLCKHLRIHWIEGARWFWDTLVDADLANNTLGWQWVAGTGADAAPYFRVFNPVTQ 417 Query: 415 GKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDK---NDLSLNYP-LPIVDHKKACHHT 470 ++FDPQ +I W+PEL + + AP WL L+ YP PI+ + Sbjct: 418 AEKFDPQAAYITRWVPELGKLAVKERFAP--WLHPLSLARLAPEYPRTPIIGLAEGRDAA 475 Query: 471 LNQY 474 L Y Sbjct: 476 LAAY 479 >gi|284046106|ref|YP_003396446.1| deoxyribodipyrimidine photo-lyase [Conexibacter woesei DSM 14684] gi|283950327|gb|ADB53071.1| Deoxyribodipyrimidine photo-lyase [Conexibacter woesei DSM 14684] Length = 476 Score = 234 bits (596), Expect = 3e-59, Method: Compositional matrix adjust. Identities = 166/499 (33%), Positives = 233/499 (46%), Gaps = 51/499 (10%) Query: 8 SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67 S +VW R DLR+ D+ L A + A+V+ VF+ P R S ++ F+ L + Sbjct: 4 STAIVWFRRDLRLHDHPPLVRAL-AAHARVVPVFVLDPAIVRGRFASGARTAFMLDCLRE 62 Query: 68 VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127 + L ++G + + + L V Y I RR + Sbjct: 63 LDADLRERGSGLVVRE-GRPERELPALAREIGAAAVHWASDATPYAIARDRRVRSALAAA 121 Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKA---LIQNLVQ----------ADL 174 Q V + + G A Y V+TPF +A L + V A L Sbjct: 122 QPAVAAVPGPGNFVADVGRPRTRAGGPYTVFTPFHRAWQQLERRTVHRTPAVLPPLPAGL 181 Query: 175 RSLPVP---AIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYV 231 R +P A+ LT ++P+ +A++P GE+ A ++ + Y Sbjct: 182 RRGALPSLAALGLTDELSPTA---------RAVEP----GERAARRAAERWLDGHLGDYA 228 Query: 232 EQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFY 291 D A GTS LSPYL G LS R+C R + + GA +++ +L WR+FY Sbjct: 229 RDHDRLA-GGTSALSPYLHHGCLSARECEQRA-------VRRGGEGAEAFVRQLAWRDFY 280 Query: 292 RHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHN 351 H++ +P + + W +D LL AW+ G TGFP++DA MRQL GWMHN Sbjct: 281 AHVLLHHPEDVR-REHQERMRALRWERDDELLAAWQDGRTGFPLVDAGMRQLRASGWMHN 339 Query: 352 RLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYF-RIFN 410 R R++T SFL KDL +DWR GE +FM LLDGD+ASNNG WQW AS G D P F RI N Sbjct: 340 RARLVTGSFLTKDLQLDWRAGEAWFMRWLLDGDVASNNGNWQWIASVGVDPAPAFRRILN 399 Query: 411 PTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND--------LSLNYPLPIVD 462 P +Q +R DP G ++R W+PEL VP + P WL + +YP PIVD Sbjct: 400 PALQQRRHDPDGAYVRRWVPELARVPDALLTEP--WLMSEQQQRAAGCRIGADYPAPIVD 457 Query: 463 HKKACHHTLNQYYAAKKQS 481 H L +Y AA +S Sbjct: 458 HAHERRRALERYRAAGSES 476 >gi|88855888|ref|ZP_01130550.1| DNA photolyase [marine actinobacterium PHSC20C1] gi|88814755|gb|EAR24615.1| DNA photolyase [marine actinobacterium PHSC20C1] Length = 476 Score = 233 bits (595), Expect = 4e-59, Method: Compositional matrix adjust. Identities = 154/481 (32%), Positives = 240/481 (49%), Gaps = 47/481 (9%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFI--ATPEQWRQHGISARQSHFIYASLLQV 68 +VWLRNDLR++DN AL AA + D ++ V+I T + R G +++ +++ SL + Sbjct: 10 IVWLRNDLRLSDNPALTAAT-SEDRPLVVVYIHDETGDGIRPLGSASKW--WLHHSLTAL 66 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128 +L + G + + L + + T + +NR+Y L + Sbjct: 67 DAALQKLGGQLTLSHGP----ATQVLPALVDELGATSVHWNRRYTAARDIDAGLKASLRE 122 Query: 129 HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIR-LTGP 187 + +S ++L P I N + YKV+TP+ +A + V+ LR+ +R L G Sbjct: 123 QGLTVESHQGNLLNEPWHIRNGQGEPYKVFTPYWRAAQERPVRDALRAPTTTTLRWLAGS 182 Query: 188 VTPSNIPRFFDYPF-----QAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGT 242 +I + P + + + GEQ A + L F E++ Y +RD PA+ T Sbjct: 183 PASDDIAEWNLLPTRPDWAEGLRETWTPGEQGARNRLESFVTERLADY-HRRDEPAVDAT 241 Query: 243 SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKP-KSGAFSWLNELIWREFYRHLMAFYPSV 301 S LSP+L G +SP Q W RL+ + P ++ +L+E+ WREF L+ P + Sbjct: 242 SGLSPHLRFGEISPTQIWQRLRGTGSTDVPNPARNNVAKFLSEIGWREFSTALLFDNPRL 301 Query: 302 CMG--KPF---IPWT------EKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMH 350 +P PW ++ ++AW++G TG P++DA MR+L G MH Sbjct: 302 ATDSYRPAYNAFPWGYTVDQIGGVDEPAGVSEVEAWRRGRTGIPLVDAGMRELWHTGTMH 361 Query: 351 NRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFN 410 NR+RM+ ASFL+K+LL+DWR GE++F L+D D ASN WQW A +G D+ PYFR+FN Sbjct: 362 NRVRMVVASFLIKNLLIDWRAGEQWFWDTLVDADEASNPANWQWVAGSGADAAPYFRVFN 421 Query: 411 PTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHT 470 P +Q K+FDP G ++ W+PEL + NYP PIVD + Sbjct: 422 PILQQKKFDPAGEYVARWIPELG-------------------TKNYPEPIVDLAETRREA 462 Query: 471 L 471 L Sbjct: 463 L 463 >gi|50954649|ref|YP_061937.1| DNA photolyase [Leifsonia xyli subsp. xyli str. CTCB07] gi|50951131|gb|AAT88832.1| DNA photolyase [Leifsonia xyli subsp. xyli str. CTCB07] Length = 466 Score = 233 bits (595), Expect = 4e-59, Method: Compositional matrix adjust. Identities = 160/491 (32%), Positives = 242/491 (49%), Gaps = 68/491 (13%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQ--WRQHGISARQSHFIYASLLQV 68 +VW R+DLR+ DN AL+AA S VI +++ + R G +AR +++ SL + Sbjct: 12 VVWFRDDLRLADNPALHAAAE-SGRPVICLYVWDEDSPGLRSPGEAARW--WLHHSLTSL 68 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128 ++S+ + G + L + +F+NR+Y E R D+ ++ + Sbjct: 69 EESIGRAGSALAIRTGP----AERVLAEVLAEVDAGAVFWNRRYGEGERRVDERVKSAAR 124 Query: 129 HR-VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL--T 185 ++ SF ++L P ++ + + VYTPF +A L + + R P+PA+R Sbjct: 125 DTGLVANSFGANLLFEPWTVRTGSGTAFSVYTPFWRAC---LARPEPRR-PLPALRRLRP 180 Query: 186 GPVTPSN-------IPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPA 238 GP PS +P D+ + + GE+ A L F E + Y +RD+P Sbjct: 181 GPSLPSLELDELKLLPVHPDW-ADGLRETWKPGERAAHRELSAFLGEGLARYRAERDVPG 239 Query: 239 IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKS---GAFSWLNELIWREFYRHLM 295 I TS+LSP L G LSP Q W+ + +S GA ++L+EL WREF H Sbjct: 240 IAATSRLSPRLRWGELSPFQVWH------ATAAARDRSTAEGAATFLSELGWREFAYHTY 293 Query: 296 AFYPSVCMGKPFIPWTEKIEWNKDS--------HLLQAWKQGYTGFPIIDAAMRQLNTIG 347 P++ T I DS L+AW+QG TG P++DA MR+L G Sbjct: 294 FERPALA--------TVNIHREYDSFPWPRLHPSALRAWQQGRTGVPLVDAGMRELWRTG 345 Query: 348 WMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFR 407 MHNR+RM+ ASFL K+LL+DWR GE++F L+D D ASN WQW A +G D+ PYFR Sbjct: 346 VMHNRVRMVAASFLTKNLLIDWRRGEQWFWDTLVDADPASNPFNWQWVAGSGADTAPYFR 405 Query: 408 IFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKAC 467 +FNP +Q ++FDP G ++R W+PE + +YP P+VD + Sbjct: 406 VFNPEVQREKFDPHGDYVRRWVPEWDTA-------------------DYPEPLVDLAETR 446 Query: 468 HHTLNQYYAAK 478 L + K Sbjct: 447 RAALAAWETVK 457 >gi|163735096|ref|ZP_02142532.1| deoxyribodipyrimidine photolyase, putative [Roseobacter litoralis Och 149] gi|161391554|gb|EDQ15887.1| deoxyribodipyrimidine photolyase, putative [Roseobacter litoralis Och 149] Length = 466 Score = 233 bits (595), Expect = 4e-59, Method: Compositional matrix adjust. Identities = 159/480 (33%), Positives = 237/480 (49%), Gaps = 35/480 (7%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISAR-QSHFIYASLLQVQ 69 +VW R DLR++D+ AL AA + + VI VFI +Q G + + + L + Sbjct: 1 MVWFRRDLRLSDHPALNAAVKSGN-PVIPVFIHD-DQVETLGAAPKWRLGLGIDHLSETL 58 Query: 70 KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL-Q 128 + L+ + I+ + ++E L + + +F+ R Y+ V RD L+ L Q Sbjct: 59 EGLNSRLILRR-------GPALETLRTLVQETGAGAVFWTRLYDPAAVDRDTELKAALKQ 111 Query: 129 HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRS---LPVP-AIRL 184 + +SF ++ P ++ YKVYTPF + V A L + +P P A Sbjct: 112 DGIDARSFGGHLMFEPWTVETKTGGFYKVYTPFWNMVKNRDVDAPLSAPAKIPAPDAWPS 171 Query: 185 TGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244 + ++ N+ D + P +GE A L F + V Y RD PA+ GTS Sbjct: 172 SEALSDWNMGAAMDRGAAVVAPYVRLGEAAAQTRLSTFIDKIVARYDTTRDQPAVDGTSG 231 Query: 245 LSPYLSIGVLSPRQCWN---RLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSV 301 LS L++G +SP QCW+ R ++E K GA ++L EL+WREF HLM P + Sbjct: 232 LSENLALGEISPHQCWHAGLRARQE-------GKPGAETFLKELVWREFAYHLMHHTPRI 284 Query: 302 CMGKPFIPWTEKIEWNKD--SHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITAS 359 W + WN+D + + W+QG TG +DAAMR+L G MHNR RMI AS Sbjct: 285 LTDNWKEGW-DSFPWNRDETTEAVMRWQQGRTGIQFVDAAMRELYVTGRMHNRGRMIVAS 343 Query: 360 FLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFD 419 +L K LL DW+IG ++F L+D D ASN GWQW+A +G D+ PYFR+FNP Q +FD Sbjct: 344 YLTKHLLSDWKIGLKWFEGCLIDWDPASNAMGWQWSAGSGPDATPYFRVFNPVTQLDKFD 403 Query: 420 PQGTFIRHWLPELNNVPTQ-----YIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQY 474 +++ W+ + P++ Y P +W D YP P+V + L Y Sbjct: 404 KDRQYVKRWIAQGRRAPSETALSFYDAIPRAWGLSGD--QEYPAPVVAADEGRKRALEAY 461 >gi|83942471|ref|ZP_00954932.1| deoxyribodipyrimidine photolyase [Sulfitobacter sp. EE-36] gi|83846564|gb|EAP84440.1| deoxyribodipyrimidine photolyase [Sulfitobacter sp. EE-36] Length = 473 Score = 233 bits (595), Expect = 5e-59, Method: Compositional matrix adjust. Identities = 162/477 (33%), Positives = 231/477 (48%), Gaps = 29/477 (6%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 L+W R DLR++D+ AL AA N+ VI VFI + +L + Sbjct: 8 LLWYRRDLRLSDHPALSAAA-NAGRPVIPVFIKDKSVNALGAAPKWRLGLGVGALADSLE 66 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD-KLLEKRLQH 129 +S + I+ + D++E L + + ++++R Y+ + V+RD K+ E Sbjct: 67 GVSSRLILRE-------GDALEALQALIKETGAGTVYWSRLYDPDSVQRDSKIKETLCND 119 Query: 130 RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRS---LPVP-AIRLT 185 + KSF V+ P ++ A YKVYTPF + V+ L + LP P + + Sbjct: 120 GIEAKSFGGHVMFEPWTVETKAGDCYKVYTPFWNNVKTRDVEPPLSAPSDLPAPESWPDS 179 Query: 186 GPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245 + + D + +GE+ A L F V Y RDIP GTS L Sbjct: 180 DALDGWGLGAAMDRGADVVRRFVCLGEKAAQSRLGAFMAHGVADYKLTRDIPGTDGTSNL 239 Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305 S LS+G +SP QCW+ + D K GA ++L EL+WREF HLM P + Sbjct: 240 SENLSLGEISPHQCWHAAQRALHD----GKQGAETFLKELVWREFAYHLMHHTPRMLTDN 295 Query: 306 PFIPWTEKIEWNKDSHL--LQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363 W + WN+D ++AWKQG TG P +DAAMR+L G MHNR RMI AS+L K Sbjct: 296 WREEW-DAFPWNEDERRAEVKAWKQGRTGEPFVDAAMRELYVTGRMHNRGRMIVASYLTK 354 Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423 L+ WRIG+++F L+D D ASN GWQWAA +G D+ PYFR+FNP Q +FD Sbjct: 355 HLMCHWRIGQKWFEHCLIDWDPASNAMGWQWAAGSGPDASPYFRVFNPETQLDKFDKNRD 414 Query: 424 FIRHWLPELNNVPTQYIHA-----PHSW-LDKNDLSLNYPLPIVDHKKACHHTLNQY 474 + W+ E P + A P SW L +D +YP I+ + L Y Sbjct: 415 YASRWIAEGRANPHKDALAFFDAIPRSWPLSADD---DYPEKIIALDEGRERALETY 468 >gi|123965553|ref|YP_001010634.1| putative DNA photolyase [Prochlorococcus marinus str. MIT 9515] gi|123199919|gb|ABM71527.1| putative DNA photolyase [Prochlorococcus marinus str. MIT 9515] Length = 478 Score = 233 bits (594), Expect = 5e-59, Method: Compositional matrix adjust. Identities = 171/479 (35%), Positives = 248/479 (51%), Gaps = 47/479 (9%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 L W R DLRI DN AL A S+A + + +I + + Q + ++ F+ SL ++ + Sbjct: 7 LFWHRKDLRIYDNNALSKAFSLSNA-ITSTYIFD-QNYSQDFNANSRAWFLGNSLQELSR 64 Query: 71 ---SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127 +L + I+ + + + + +D+ + +N+ E E+ RD ++ L Sbjct: 65 NWETLGSRMIIDEGNPLTLIPKLAQLIDAKFVA-------WNKAIEPYEINRDLEIKNTL 117 Query: 128 QH-RVICKSFDDSVLLPPGSILNHALQMYKVYTPF------------RKALIQNLVQADL 174 + ++ D +LL P I + + Y VY PF K + N+ L Sbjct: 118 KKFKIEIIELWDHLLLEPSQIHTGSNKPYTVYGPFYKKLKSKLQLLTSKKNLNNI--GKL 175 Query: 175 RSLPVPAIRLTGPVTPSNI--PRFFD-YPFQAID--PMFPIGEQNALHILRKFC-KEKVY 228 + L + I+ + + S + +F F I+ P P GE A +L +F ++K+ Sbjct: 176 KDLEI-GIKESQKIDSSRLILEKFIKKVNFDGINLCPCKP-GEIAAEKLLDQFINQDKIG 233 Query: 229 YYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFS---WLNEL 285 Y RD P GTS LS L G +S R+ WN F DL K S W EL Sbjct: 234 SYASSRDFPDQNGTSFLSASLRFGTISIRKVWNSTL--FTDLKNKNNHNKISIETWQKEL 291 Query: 286 IWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNT 345 +WREFY+H + +P + G P+ + W + W G TG PIIDAAMRQLN+ Sbjct: 292 VWREFYQHCLFHFPELEKG-PYRKKWDHFPWQNNHEWFDRWSNGETGVPIIDAAMRQLNS 350 Query: 346 IGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPY 405 GWMHNR RMI ASFLVKDL+ +W++GEE FM L+DGDLA+NNGGWQW+AS+G D P Sbjct: 351 TGWMHNRCRMIVASFLVKDLICNWQMGEEKFMKVLVDGDLAANNGGWQWSASSGMDPKP- 409 Query: 406 FRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYI-HAPHSWLDKNDLSLNYPLPIVDH 463 RIFNP Q K+FDP +I+ W+PEL+ VP + I + S L+KN NY IV+H Sbjct: 410 LRIFNPYTQTKKFDPICKYIKFWIPELSKVPNKDILNGEISDLEKN----NYYGAIVNH 464 >gi|298208823|ref|YP_003717002.1| deoxyribodipyrimidine photolyase-class I [Croceibacter atlanticus HTCC2559] gi|83848750|gb|EAP86619.1| deoxyribodipyrimidine photolyase-class I [Croceibacter atlanticus HTCC2559] Length = 434 Score = 233 bits (593), Expect = 6e-59, Method: Compositional matrix adjust. Identities = 150/476 (31%), Positives = 229/476 (48%), Gaps = 49/476 (10%) Query: 6 AMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASL 65 + V + W R DLR+ DN A D V+ +FI + + + + FI+ +L Sbjct: 2 SKKVSIFWFRRDLRLDDNVGFLEALK-GDYPVLPLFIFDKDILDKLPENDARVTFIFETL 60 Query: 66 LQVQKSLSQKGIVFQYHQCSNFDDSIEWL-DSYCLQQRVTKLFYNRQYEINEVRRDKLLE 124 +++K L + F D+ E + S ++ ++F NR YE RD ++ Sbjct: 61 QEMRKELQDD----YDSSLAMFHDTPEKVFKSLVKDYQIQEVFTNRDYEPYAKERDTSIK 116 Query: 125 KRL-QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIR 183 + L ++ + ++ D V+ ++ Y VYTP++ +N L+ + + Sbjct: 117 ELLSKNNISFNTYKDQVIFEKDEVVKKDGDPYLVYTPYKNTWKENFKDHTLK-IHYTSQH 175 Query: 184 LTGPVTPSNIPR--FFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQG 241 L V + +P + F+ FP + + I Y + R+ PA G Sbjct: 176 LDNTVKNTRLPNVSLSEMGFKKSSISFPEYDTSPTLIEN---------YNDTRNFPAKDG 226 Query: 242 TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSV 301 TS LSP+L G + R+ + + I K F W NELIWREF+ ++ +P Sbjct: 227 TSNLSPHLRFGTVGIRKIYKKA--------IDAKDETF-W-NELIWREFFMQILYHFPE- 275 Query: 302 CMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFL 361 + F ++IEW + + WK G TG+P++DA MRQLN G MHNR+RM+ SFL Sbjct: 276 TVNNAFKKKYDRIEWRNNEDEFEKWKTGTTGYPLVDAGMRQLNETGLMHNRVRMVVGSFL 335 Query: 362 VKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQ 421 K LL+DWR GE YF +LLD +++SN G WQW A +G D+ PYFRIFNPT Q +FD Sbjct: 336 CKHLLIDWRWGEAYFAEKLLDYEMSSNVGNWQWVAGSGVDAAPYFRIFNPTTQIDKFDKN 395 Query: 422 GTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477 T+I HW+ E N + YP +VDHK+A LN Y +A Sbjct: 396 KTYINHWVKEYN-------------------TNKYPEKMVDHKEARERCLNAYKSA 432 >gi|78047092|ref|YP_363267.1| putative photolyase [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|78035522|emb|CAJ23168.1| putative photolyase [Xanthomonas campestris pv. vesicatoria str. 85-10] Length = 500 Score = 233 bits (593), Expect = 7e-59, Method: Compositional matrix adjust. Identities = 158/449 (35%), Positives = 225/449 (50%), Gaps = 27/449 (6%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQ---WRQHGISARQSHFIYA 63 MS +VW R DLR+ DN AL AA ++ I ++I P + W S H A Sbjct: 29 MSYAIVWFRRDLRLEDNPALRAAL-DAGHHPIPLYIDAPHEEGEWTPGAASRTWRHRSLA 87 Query: 64 SLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLL 123 +L ++L G+V + DS + LD Q +++NR+YE RD + Sbjct: 88 ALDGALRALG-SGLVIRS------GDSAQVLDEVIAQTGAVAVYWNRKYEPATQPRDAQI 140 Query: 124 EKRLQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPF-RKALIQ----NLVQADLRSL 177 ++ L+ R I +S + ++L P + YKV+TPF R AL Q + A R Sbjct: 141 KRDLRERGIEVQSCNAALLFEPWQLSTQQGGPYKVFTPFWRNALTQLQLPAAMDAPRRLP 200 Query: 178 PVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIP 237 P+PA T + + + Q + GE A +L F + Y E RD P Sbjct: 201 PLPASLKTDALDTLQLVPGLQWD-QGFWEHWQPGEAGAHEMLEIFIDGALSGYRENRDRP 259 Query: 238 AIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAF--SWLNELIWREFYRHLM 295 GTSQLSP+L G ++P + + L+ ++GA ++ +L WR+F HL+ Sbjct: 260 DRVGTSQLSPHLHFGEIAPWRIASTLEAHRT-----ARNGAEIDGYIRQLGWRDFAYHLL 314 Query: 296 AFYPSVCMGKPFIPWTEKIEWNK-DSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLR 354 +P + P +W D LQAW++G TG PI+DA MRQL GWMHNR+R Sbjct: 315 HHFPDTT-NQNLNPRFAGFDWATVDPVALQAWQRGRTGIPIVDAGMRQLWHTGWMHNRVR 373 Query: 355 MITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQ 414 MI ASFL K L + W G +F L+D DLA+N GWQW A TG D+ PYFR+FNP Q Sbjct: 374 MIVASFLCKHLRIHWIEGARWFWDTLVDADLANNTLGWQWVAGTGADAAPYFRVFNPVTQ 433 Query: 415 GKRFDPQGTFIRHWLPELNNVPTQYIHAP 443 ++FDP T+I W+PEL + + AP Sbjct: 434 AEKFDPHATYITRWVPELGKLAVKERFAP 462 >gi|192291959|ref|YP_001992564.1| Deoxyribodipyrimidine photo-lyase [Rhodopseudomonas palustris TIE-1] gi|192285708|gb|ACF02089.1| Deoxyribodipyrimidine photo-lyase [Rhodopseudomonas palustris TIE-1] Length = 483 Score = 232 bits (592), Expect = 8e-59, Method: Compositional matrix adjust. Identities = 156/488 (31%), Positives = 232/488 (47%), Gaps = 33/488 (6%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 +VW R+DLR+ D+ AL+AA S A V+ V++ + ++ SL ++ Sbjct: 11 IVWFRDDLRLADHPALHAAAQ-SGAPVLCVYVLDEVSDDVRALGGAVRWWLAQSLRALES 69 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130 L G + + L Q + +N + EI R Sbjct: 70 DLRALGGALILRRGP----AAAVLAELAQQHDAAAVHWN-EIEI-AAHRAVADALADALT 123 Query: 131 VICKSFD---DSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187 V ++ L+ P +I + + +V+TPF + ++ + + LP P P Sbjct: 124 VAGIAYHRHRGDTLVEPSAIRSKDGRGMRVFTPFWRRVLS--LGDPPQPLPRPTTLRPAP 181 Query: 188 VTPSNIPRFFDYPFQAIDP--------MFPIGEQNALHILRKFCKEKVYYYVEQRDIPAI 239 PS+ + D+ + P + GE A L F + Y + RD P Sbjct: 182 APPSD--QLGDWQLEPTAPDWAGGLRQTWTPGEAAAQARLSDFLA-GLPGYADGRDYPDR 238 Query: 240 QGTSQLSPYLSIGVLSPRQCWNRLKEEFVDL-LIKPKSGAFSWLNELIWREFYRHLMAFY 298 TS LSP+L G +SPRQ W + + I P F L+EL WREF RHL+ + Sbjct: 239 HITSGLSPHLRFGEISPRQVWYAARFAAAERPAIAPDIDKF--LSELGWREFCRHLLFDH 296 Query: 299 PSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITA 358 P + + P + W D +L AW++G TG+PI+DA MR+L G MHNR+RM+ Sbjct: 297 PDLAT-RNLQPAFDAFPWQSDDAVLTAWQRGRTGYPIVDAGMRELWHSGVMHNRVRMVVG 355 Query: 359 SFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRF 418 SFLVK LL+DWR+GE++F L+D D SN G WQW A G D+ PYFR+FNP +Q ++F Sbjct: 356 SFLVKHLLIDWRLGEQWFWDTLVDADPGSNPGNWQWVAGCGADAAPYFRVFNPVLQSEKF 415 Query: 419 DPQGTFIRHWLPELNNVPTQYIHAPHSWLDKN------DLSLNYPLPIVDHKKACHHTLN 472 D G +I+ W+PEL +P IH P + +L NYP PIVDHK L+ Sbjct: 416 DAGGAYIQRWVPELAGLPNDLIHQPWTATPLELAAAGIELGGNYPGPIVDHKTGRQRALS 475 Query: 473 QYYAAKKQ 480 Y +++ Sbjct: 476 AYAELRQR 483 >gi|296140720|ref|YP_003647963.1| deoxyribodipyrimidine photo-lyase [Tsukamurella paurometabola DSM 20162] gi|296028854|gb|ADG79624.1| Deoxyribodipyrimidine photo-lyase [Tsukamurella paurometabola DSM 20162] Length = 451 Score = 232 bits (592), Expect = 1e-58, Method: Compositional matrix adjust. Identities = 149/470 (31%), Positives = 226/470 (48%), Gaps = 26/470 (5%) Query: 13 WLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQKSL 72 W R DLR+ DN AL C + A + + G R++ + A++L + L Sbjct: 6 WARRDLRLGDNPAL---CAAAAAGPVLPLVVLDPALLHDGARPREAWYA-ANVLALDDQL 61 Query: 73 SQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL-QHRV 131 + C +E + + L+ T + +R+ RRD + RL +H + Sbjct: 62 GGE-------LCLRSGSPVEEVLAVALETGATAVHVSRETTPFGSRRDASIRDRLAEHGI 114 Query: 132 ICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPS 191 + PG I+ Y+V+ F++A ++ A + LP P + Sbjct: 115 DWVETGSPYAVTPGRIVKSDGTPYRVFGAFQRAWREHRWPAPAQ-LPDRVHWARPPAGGA 173 Query: 192 NIPRFFDYPFQAID-PMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLS 250 R +A P+ P GE AL +F +++ Y + RD P +S+LSPYL Sbjct: 174 AERRSLAAMVEASPVPLPPAGESAALDRWHRFRTDELARYAQDRDRPDHDASSRLSPYLK 233 Query: 251 IGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPW 310 +G + PR L GA + +EL WR+FY ++ +P + Sbjct: 234 VGAVHPRTLLTGLGS---------SDGAAKYASELCWRDFYADVLYHHPD-SLRTDLTKA 283 Query: 311 TEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWR 370 +E+ AW++G TG+P++DA MRQL T GWMHNR+RM+ ASFL KDL V W Sbjct: 284 LAGLEYTPPGADFTAWQRGATGYPLVDAGMRQLRTEGWMHNRVRMVVASFLSKDLHVWWP 343 Query: 371 IGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLP 430 G +F+ LLDGD ASN GWQW A TG D+ PYFR+FNPT Q ++FDP+G ++R ++P Sbjct: 344 HGAAHFLDLLLDGDPASNAHGWQWVAGTGTDAAPYFRVFNPTTQAEKFDPRGDYVRRYVP 403 Query: 431 ELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQ 480 EL ++ AP W + + YP PIVDH + TL +Y + + Sbjct: 404 ELRHLDGAAALAP--WKHTDGYAHGYPAPIVDHAEERAVTLARYGTVRGK 451 >gi|297195865|ref|ZP_06913263.1| deoxyribodipyrimidine photolyase [Streptomyces pristinaespiralis ATCC 25486] gi|197720806|gb|EDY64714.1| deoxyribodipyrimidine photolyase [Streptomyces pristinaespiralis ATCC 25486] Length = 457 Score = 232 bits (591), Expect = 1e-58, Method: Compositional matrix adjust. Identities = 151/465 (32%), Positives = 235/465 (50%), Gaps = 32/465 (6%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M+V +V +DLR+ D+ L AA +D +V+ +F+ P + + F+ L Sbjct: 1 MTVAVVLFTSDLRLHDHPPLRAALRAAD-EVVPLFVLDPGIGAAGFEAPNRCAFLADCLA 59 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 + SL ++G + + + + C V +Y RR++LL Sbjct: 60 DLDASLRERGGRLVV-RSGPVAQQVGAIAAECGAGEVHMAAGVTRYA---RRREELLRTV 115 Query: 127 LQHRVICKSFDDSVL--LPPGSILNHALQMYKVYTPFRKALIQNLVQADLR---SLPVPA 181 L+ R D+V+ + PG++ Y V+TP+ + Q ++ R ++PVP Sbjct: 116 LRERGATLRTHDAVITVVAPGAVTPAGSDHYSVFTPYFRRWSQQRLRDPCRAPRTVPVP- 174 Query: 182 IRLTGPVTPSN--IPRFFDYPFQAIDPMFPIGEQNALHI-LRKFCKEKVYYYVEQRDIPA 238 + + G PS +PR I P P G ++A + + Y Q D A Sbjct: 175 VTMHGEPLPSRDAVPR--------ISPGLPAGGESAGRKRFHDWEASGLDAYDVQHDSLA 226 Query: 239 IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFY 298 TS+LSPYL G LSP E + +GA +++ +L WR+F+ +MA Sbjct: 227 GDMTSRLSPYLHFGALSP-------LELVREASAHGGTGAEAFVRQLCWRDFHHQVMAAR 279 Query: 299 PSVCMGKPFIPWTEKIEWNKDS-HLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMIT 357 P+ + + + P ++ D+ + AWK+G TGFP++DAAMRQL GWMHNR R++ Sbjct: 280 PASSV-EDYRPRHDRWRTQDDAAEDITAWKEGATGFPVVDAAMRQLRHEGWMHNRARLLV 338 Query: 358 ASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKR 417 ASFL K L VDWRIG YF+ +L+DGD+ +N WQW A TG D+ P+ R+ NP +QGKR Sbjct: 339 ASFLTKTLYVDWRIGARYFLDRLVDGDIVNNQLNWQWVAGTGTDTRPH-RVLNPVVQGKR 397 Query: 418 FDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVD 462 FDP+G ++R W+PEL +P +H P L+YP P++D Sbjct: 398 FDPRGEYVRRWVPELREIPDGAVHEPWRLPADRRARLDYPDPLID 442 >gi|325928738|ref|ZP_08189908.1| deoxyribodipyrimidine photo-lyase type I [Xanthomonas perforans 91-118] gi|325540906|gb|EGD12478.1| deoxyribodipyrimidine photo-lyase type I [Xanthomonas perforans 91-118] Length = 472 Score = 232 bits (591), Expect = 1e-58, Method: Compositional matrix adjust. Identities = 166/488 (34%), Positives = 240/488 (49%), Gaps = 33/488 (6%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQ---WRQHGISARQSHFIYA 63 MS +VW R DLR+ DN AL AA ++ I ++I P + W S H A Sbjct: 1 MSYAIVWFRRDLRLEDNPALRAAL-DAGHHPIPLYIDAPHEEGEWTPGAASRTWRHRSLA 59 Query: 64 SLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLL 123 +L ++L G+V + +S + LD Q +++NR+YE RD + Sbjct: 60 ALDGALRALG-SGLVIRS------GNSAQVLDEVIAQTGAAAVYWNRKYEPATQPRDAQI 112 Query: 124 EKRLQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPF-RKALIQ----NLVQADLRSL 177 ++ L+ R I +S + ++L P + YKV+TPF R AL Q + A R Sbjct: 113 KRDLRERGIEVQSCNAALLFEPWQLSTQQGGPYKVFTPFWRNALTQLQLPAAMDAPRRLP 172 Query: 178 PVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIP 237 P+PA T + + + Q + GE A +L F + Y E RD P Sbjct: 173 PLPASLKTDALDTLQLVPGLQWD-QGFWEHWQPGEAGAHEMLEIFIDGALSGYRENRDRP 231 Query: 238 AIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAF--SWLNELIWREFYRHLM 295 GTSQLSP+L G ++P + + L+ ++GA +++ +L WR+F HL+ Sbjct: 232 DRVGTSQLSPHLHFGEIAPWRIASTLETHRT-----ARNGAEIDAYIRQLGWRDFAYHLL 286 Query: 296 AFYPSVCMGKPFIPWTEKIEWNK-DSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLR 354 +P + P +W D LQAW++G TG PI+DA MRQL GWMHNR+R Sbjct: 287 HHFPDTT-NQNLNPRFAGFDWATVDPVALQAWQRGRTGIPIVDAGMRQLWHTGWMHNRVR 345 Query: 355 MITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQ 414 MI ASFL K L + W G +F L+D DLA+N GWQW A TG D+ PYFR+FNP Q Sbjct: 346 MIVASFLCKHLRIHWIEGARWFWDTLVDADLANNTLGWQWVAGTGADAAPYFRVFNPVTQ 405 Query: 415 GKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSL---NYPL-PIVDHKKACHHT 470 ++FDPQ +I W+PEL + + AP WL L+ YP PI+ + Sbjct: 406 AEKFDPQAAYITRWVPELGKLAVKERFAP--WLHPLSLARFAPEYPRNPIIGLAEGRDAA 463 Query: 471 LNQYYAAK 478 L Y ++ Sbjct: 464 LAAYAKSR 471 >gi|89054480|ref|YP_509931.1| deoxyribodipyrimidine photo-lyase type I [Jannaschia sp. CCS1] gi|88864029|gb|ABD54906.1| deoxyribodipyrimidine photo-lyase type I [Jannaschia sp. CCS1] Length = 468 Score = 231 bits (590), Expect = 2e-58, Method: Compositional matrix adjust. Identities = 153/478 (32%), Positives = 231/478 (48%), Gaps = 32/478 (6%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISAR-QSHFIYASLLQVQ 69 + W+R D R++DN AL AAC V+ +FI E HG + + + + + Sbjct: 4 IYWVRRDFRLSDNPALVAACERG--AVVPLFICD-EVIEGHGAAPKWRLGLGVEAFAEAL 60 Query: 70 KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH 129 ++ K I+ + D++ L + + +NR Y+ + +RD+ ++ L+ Sbjct: 61 HAVGSKLILRR-------GDALPTLRAVIADVSANAVHWNRLYDPDSRKRDEAVKAALKE 113 Query: 130 R-VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188 V S VL P ++ YKVYTPF K + L + +PA T P Sbjct: 114 DGVEAISHKGHVLFEPWTVETKTGGYYKVYTPFWKMVRDRSPGEALAAPKIPAPD-TWPA 172 Query: 189 TPS----NIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244 + ++ + + + + P +GEQ A L F + Y + RD A GTS Sbjct: 173 SDDLSDWHLGKAMNRGAEVVAPHLNVGEQAAQGRLGAFIGNGIDDYADARDNLAKNGTSL 232 Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304 LS L+ G +S RQCW+ + D K GA ++L E++WR+F HL+ P + Sbjct: 233 LSENLAYGEISARQCWHAGQRAMAD----GKPGAETFLKEVVWRDFAYHLVHHTPRITTA 288 Query: 305 KPFIPWTEKIEWNKDSHL--LQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLV 362 W E WN D + AWKQG TG ++DAAMR++ G MHNR RM+ AS+L Sbjct: 289 NWREEW-EAFPWNTDPDTPEVTAWKQGRTGMAVVDAAMREMYVTGRMHNRARMLVASYLT 347 Query: 363 KDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQG 422 K L+ DW+IG ++F L+D D ASN GWQW+A +G D+ PYFR+FNP Q ++FD G Sbjct: 348 KHLMTDWKIGMDWFEECLVDWDPASNAMGWQWSAGSGPDATPYFRVFNPETQAEKFDKAG 407 Query: 423 TFIRHWLPELNNVPTQYIHA-----PHSWLDKNDLSLNYP-LPIVDHKKACHHTLNQY 474 + WL E+ P A P +W D ++ YP PIV + L+ Y Sbjct: 408 RYRMRWLAEITGKPQDTASAYFDAVPRAW--GLDPTMGYPSAPIVTASEGRKRALDAY 463 >gi|58039440|ref|YP_191404.1| deoxyribodipyrimidine photolyase [Gluconobacter oxydans 621H] gi|58001854|gb|AAW60748.1| Deoxyribodipyrimidine photolyase [Gluconobacter oxydans 621H] Length = 479 Score = 231 bits (590), Expect = 2e-58, Method: Compositional matrix adjust. Identities = 154/485 (31%), Positives = 236/485 (48%), Gaps = 39/485 (8%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 +VW R+DLR+ D+ AL+ A S +I ++I H + A ++ +L +++ Sbjct: 10 IVWFRDDLRMADHPALHEAA-ASGWPLICLYILDDVTPALHPLGAAARWWLRGALADLRR 68 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130 +L ++G S + + L Q + ++ + E +D + + L+ + Sbjct: 69 NLEKQGGTLLTLSGS----AEKLLPQLAKQTDAASVHWHHRLHERERAQDNRIRRTLEEQ 124 Query: 131 VICKSFD--DSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188 C+ +VL+ P ++ YKV F KAL + V L + RL+ Sbjct: 125 E-CEVHAQWGTVLVDPDTVQTKQGGFYKVCGSFWKALQTHAVPEPLEA----PSRLSFHA 179 Query: 189 TPSNIPRFFDYPFQAIDPMFPI-----------GEQNALHILRKFCKEKVYYYVEQRDIP 237 P+++ ++ P P GE L F K V Y RD Sbjct: 180 IPASVLSDARLNEDSLCPQAPDWAAGFRKTWEPGEAEGQEHLEDFLKNSVAGYPRGRDRV 239 Query: 238 AIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAF 297 A +GTS+LSPYL+ G +SPRQ W L++ G +L+EL WREF R+ + Sbjct: 240 AEEGTSRLSPYLASGAVSPRQVWAALQKHGAH-----TDGPRIFLSELGWREFARYTLYH 294 Query: 298 YPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMIT 357 P + + P + W + + L+AW++G TG PI+DA MRQL GWMHNR RMI Sbjct: 295 LPKLPF-ENLSPKFSGMHWRRSAADLKAWQRGQTGVPIVDAGMRQLWQTGWMHNRARMIV 353 Query: 358 ASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKR 417 SFL K LL+DW+ G+ +F L+D D A+N WQW A TG ++ P+FRIFNPT Q ++ Sbjct: 354 GSFLTKHLLIDWKEGDAWFRDTLVDADFANNAMNWQWVAGTGIEATPFFRIFNPTRQAEK 413 Query: 418 FDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND--------LSLNYPLPIVDHKKACHH 469 FDP G +IR W+PEL + + + P W K++ L +YP PIVD K+ Sbjct: 414 FDPNGDYIRQWVPELRRLSGKALFEP--WAAKDEELEKAGVRLGKSYPRPIVDLKEGRDR 471 Query: 470 TLNQY 474 L + Sbjct: 472 ALQAF 476 >gi|295096577|emb|CBK85667.1| Deoxyribodipyrimidine photolyase [Enterobacter cloacae subsp. cloacae NCTC 9394] Length = 278 Score = 231 bits (590), Expect = 2e-58, Method: Compositional matrix adjust. Identities = 120/262 (45%), Positives = 166/262 (63%), Gaps = 6/262 (2%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M HLVW R DLRI DN AL AAC DA V+A+FIATPEQWRQH ++ RQ+ + A L Sbjct: 1 MPTHLVWFRADLRIHDNFALAAACRAKDANVLALFIATPEQWRQHDMAPRQAALLSAYLN 60 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 +Q SL++KGI Y + +F + + + C Q VT L+YN QYE NE +RD+ LEK Sbjct: 61 DLQHSLAEKGIPLIYKEAHDFAAQRQTVQAICQQHAVTHLYYNYQYEFNEQQRDRQLEKT 120 Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 L V+C+ FDDSV+L PGS++ + +MYKV+TPF+ A I+ L + + P +R Sbjct: 121 LAG-VVCEGFDDSVMLAPGSVMTGSHEMYKVFTPFKNAFIKRLKEGLPECVTAPTVRGE- 178 Query: 187 PVTPSNIPRF-FDYPFQAIDP-MFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244 T +++P +YP Q+ D +FP E+ A+ LR+FC + Y +RD PA +GTS+ Sbjct: 179 --TITDMPAIRLNYPQQSFDETVFPASEKAAIDRLRQFCTQGAAEYEARRDFPATEGTSR 236 Query: 245 LSPYLSIGVLSPRQCWNRLKEE 266 LS L++G LSPRQC +RL E Sbjct: 237 LSACLALGALSPRQCLHRLLAE 258 >gi|39936242|ref|NP_948518.1| deoxyribodipyrimidine photolyase [Rhodopseudomonas palustris CGA009] gi|39650097|emb|CAE28620.1| Deoxyribodipyrimidine photolyase [Rhodopseudomonas palustris CGA009] Length = 483 Score = 231 bits (589), Expect = 2e-58, Method: Compositional matrix adjust. Identities = 155/487 (31%), Positives = 228/487 (46%), Gaps = 31/487 (6%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 +VW R+DLR+ D+ AL+AA S A V+ V++ + ++ SL ++ Sbjct: 11 IVWFRDDLRLADHPALHAAA-QSGAPVLCVYVLDEVSDDVRALGGAVRWWLAQSLRALES 69 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ-- 128 L G + + L Q + +N + EI R Sbjct: 70 ELRALGGALILRRGP----TAAVLAELAQQHDAAAVHWN-EIEIAAHRAVADALADALTV 124 Query: 129 HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188 + L+ P +I + + +V+TPF + ++ + + LP P P Sbjct: 125 AGIAYHRHRGDTLVEPSAIRSKDGRGMRVFTPFWRRVLS--LGDPPQPLPRPTTLRPAPA 182 Query: 189 TPSNIPRFFDYPFQAIDP--------MFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ 240 P+ + D+ + P + GE A L F + Y E RD P Sbjct: 183 VPTE--QLSDWQLEPTAPDWAGGLRQTWTPGEAAAQTRLAAFLAMQPGY-AEGRDYPDRH 239 Query: 241 GTSQLSPYLSIGVLSPRQCWNRLKEEFVDL-LIKPKSGAFSWLNELIWREFYRHLMAFYP 299 TS LSP+L G +SPRQ W + + I P F L+E+ WREF RHL+ +P Sbjct: 240 ITSGLSPHLRFGEISPRQVWYAARFAAAERPAIAPDIDKF--LSEVGWREFCRHLLFDHP 297 Query: 300 SVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITAS 359 + + P + W D +L AW++G TG+PI+DA MR+L G MHNR+RM+ S Sbjct: 298 DLA-SRNLQPAFDAFPWQSDDAVLTAWQRGRTGYPIVDAGMRELWHSGVMHNRVRMVVGS 356 Query: 360 FLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFD 419 FLVK LL+DWR+GE++F L+D D SN G WQW A G D+ PYFR+FNP +Q ++FD Sbjct: 357 FLVKHLLIDWRLGEQWFWDTLVDADPGSNPGNWQWVAGCGADAAPYFRVFNPVLQSEKFD 416 Query: 420 PQGTFIRHWLPELNNVPTQYIHAPHSWLDKN------DLSLNYPLPIVDHKKACHHTLNQ 473 G +IR W+PEL +P IH P + L NYP PIVDHK L+ Sbjct: 417 AGGAYIRRWVPELARLPNDLIHQPWTATPLELAAAGIKLGGNYPGPIVDHKTGRQRALSA 476 Query: 474 YYAAKKQ 480 Y +++ Sbjct: 477 YAELRQR 483 >gi|149914833|ref|ZP_01903363.1| deoxyribodipyrimidine photolyase, putative [Roseobacter sp. AzwK-3b] gi|149811626|gb|EDM71461.1| deoxyribodipyrimidine photolyase, putative [Roseobacter sp. AzwK-3b] Length = 473 Score = 231 bits (589), Expect = 2e-58, Method: Compositional matrix adjust. Identities = 146/412 (35%), Positives = 210/412 (50%), Gaps = 47/412 (11%) Query: 89 DSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL-QHRVICKSFDDSVLLPPGSI 147 D+ + L + + ++++R Y+ V RDK ++ L Q + +S++ ++ P ++ Sbjct: 78 DATQTLRALATETGAGAVYWSRAYDPESVARDKAVKAALKQDGLDARSYEGHLMFEPWTV 137 Query: 148 LNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQ----- 202 A Y+VYTPF + + + R +P P PS+IP D+P Sbjct: 138 ETGAGGFYRVYTPFWRTVKE-------RDVPEPE------PAPSHIPAPKDWPLSDALED 184 Query: 203 -----AID-------PMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLS 250 A+D P +GE+ A L F + Y RD+PA GTS LS L+ Sbjct: 185 WRLAAAMDRGAAICRPYQRVGEEAAQGRLGWFTGHAIGAYDTARDLPAEDGTSGLSENLA 244 Query: 251 IGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPW 310 +G +SPR+CW+ + + + K GA +WL EL+WREF HL P + W Sbjct: 245 LGEISPRRCWH----AGMRAMHEGKPGAETWLKELVWREFAYHLAWHTPRIVNRNWREDW 300 Query: 311 TEKIEWNKDSHLLQ--AWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVD 368 + WN+D Q AWKQG TG P +DAAMR++ G MHNR RMI AS+L K LL Sbjct: 301 -DAFPWNEDEDHPQVIAWKQGRTGIPFVDAAMREMYVTGRMHNRARMIVASYLTKHLLSH 359 Query: 369 WRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHW 428 WRIG+++F + L D D ASN GWQW+A +G D+ PYFR+FNP Q ++FDP+ ++ W Sbjct: 360 WRIGQKWFEACLTDWDPASNAMGWQWSAGSGPDATPYFRVFNPETQVQKFDPKSRYLDRW 419 Query: 429 LPELNNVPT----QYIHA-PHSW-LDKNDLSLNYPLPIVDHKKACHHTLNQY 474 + E PT Y A P W L +D+ YP PIV K L Y Sbjct: 420 IAEGRRNPTDTALSYFEAIPRKWGLSADDI---YPEPIVSVKDGRAKALAAY 468 >gi|255022957|ref|ZP_05294943.1| deoxyribodipyrimidine photolyase [Listeria monocytogenes FSL J1-208] Length = 246 Score = 231 bits (589), Expect = 2e-58, Method: Compositional matrix adjust. Identities = 116/244 (47%), Positives = 150/244 (61%), Gaps = 13/244 (5%) Query: 242 TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSV 301 TS LS YL G +S R W L+E + G ++ EL WR+FY + +P+ Sbjct: 4 TSHLSRYLRTGEISIRTIWQALQE------TEATEGRATFEKELCWRDFYNMIYVSFPN- 56 Query: 302 CMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFL 361 +P IEW + +AW++G TGFP++DAAMRQL GWMHNRLRMITASFL Sbjct: 57 QKNEPIQENYRFIEWENNREFFKAWQEGETGFPLVDAAMRQLKETGWMHNRLRMITASFL 116 Query: 362 VKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQ 421 KDLL+DWR GE+YF L+D D ASN GGWQWAAST D+VPYFRIFNPT Q ++FDP Sbjct: 117 TKDLLIDWRFGEKYFQQMLIDYDPASNIGGWQWAASTATDAVPYFRIFNPTTQAQKFDPT 176 Query: 422 GTFIRHWLPELNNVPTQYIHAPHSWLDKND------LSLNYPLPIVDHKKACHHTLNQYY 475 G FIR ++ EL N+P +YIH P + L +YP P+VDHK+ + +Y Sbjct: 177 GKFIRKYVKELANLPDKYIHQPEKMSETVQKEHGLILGKDYPFPLVDHKERRKLAIARYE 236 Query: 476 AAKK 479 +K+ Sbjct: 237 FSKE 240 >gi|99081282|ref|YP_613436.1| deoxyribodipyrimidine photo-lyase type I [Ruegeria sp. TM1040] gi|99037562|gb|ABF64174.1| Deoxyribodipyrimidine photo-lyase type I [Ruegeria sp. TM1040] Length = 474 Score = 231 bits (588), Expect = 2e-58, Method: Compositional matrix adjust. Identities = 161/484 (33%), Positives = 234/484 (48%), Gaps = 34/484 (7%) Query: 13 WLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQKSL 72 W+R DLR+ DN AL AA + +I ++I ++ + A + L + K+L Sbjct: 10 WIRRDLRLRDNPALRAA-QEAGGPIIPLYIHDAQE---EALGAAPKFRLGLGLERFAKTL 65 Query: 73 SQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHRVI 132 +KG + D++E L + + ++R Y+ +RD +++ L+ I Sbjct: 66 EEKGSRLIVRRG----DALEVLREVIAESGAGHVIWSRLYDPAATKRDAKIKEALKASDI 121 Query: 133 -CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPS 191 KS +L P ++ MY+VYTPF KA+ V A+L + P RL P + Sbjct: 122 KAKSTGGRLLFEPWTVDTKDGGMYRVYTPFWKAVRTRDV-AELTAAPS---RLAAPESWP 177 Query: 192 NIPRFFDYPFQA--------IDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS 243 + D A + +GE AL L F E+V Y RD PA TS Sbjct: 178 SGEALADLGMDAAMRRGGAIVAQHCRVGEDAALAQLDDFLTERVSNYKAHRDFPARAATS 237 Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCM 303 +LS L+ G +SP + W+ + D + GA +L E++WREF HLM P + Sbjct: 238 ELSENLAWGEISPHRMWHLGAQAMQD----GQPGAEHFLKEVVWREFAYHLMHRSPRILT 293 Query: 304 GKPFIPWTEKIEWNKD-SHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLV 362 W + W D LQ W+QG TG+ +DAAMR+L G MHNR RMI ASFL Sbjct: 294 RNWREEW-DGFPWQDDPGDALQRWQQGQTGYDFVDAAMRELYVTGKMHNRARMIVASFLT 352 Query: 363 KDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQG 422 K L++ W+ G ++F L+D D ASN GWQW A +G D+ P+FRIFNP Q ++FDP+G Sbjct: 353 KHLMIHWKYGLQWFEDCLVDWDPASNAMGWQWVAGSGPDAAPFFRIFNPDGQLEKFDPKG 412 Query: 423 TFIRHWLPELNNVPTQYIHA-----PHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477 + R WLPE P + A P W D S PI+ K+ L+ Y + Sbjct: 413 DYARRWLPEGQANPPETAMAYFEAIPRRWSLHPDQSRVS--PIIGLKEGRERALSAYKES 470 Query: 478 KKQS 481 + QS Sbjct: 471 RNQS 474 >gi|288919996|ref|ZP_06414317.1| Deoxyribodipyrimidine photo-lyase [Frankia sp. EUN1f] gi|288348649|gb|EFC82905.1| Deoxyribodipyrimidine photo-lyase [Frankia sp. EUN1f] Length = 472 Score = 231 bits (588), Expect = 2e-58, Method: Compositional matrix adjust. Identities = 158/484 (32%), Positives = 228/484 (47%), Gaps = 39/484 (8%) Query: 13 WLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQKSL 72 WLR DLR+ DN AL AA V+A+F+ R G + F+Y L + + L Sbjct: 3 WLRRDLRLDDNPALIAAA--GQGPVLALFVLDEALCRPAGPV--RLAFLYRCLRDLDRRL 58 Query: 73 SQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL--QHR 130 + + C D + + + + + + RRD+ + + L R Sbjct: 59 AGR-------LCVRAGDPEQVVPAVAGEIGADVVHIAADHGPYGRRRDERVARALLAGGR 111 Query: 131 VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTP 190 + ++ + + PG ++ Y+V+TPF +A + P P P P Sbjct: 112 ELRRT-GSAYAVEPGRLVKPDGSPYRVFTPFYRAWKAH-------GWPEPVA--PAPTEP 161 Query: 191 SNI-PRFFDYPFQAIDP--------MFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQG 241 + P + I P + P GEQ A L F + + Y RD PA Sbjct: 162 DWLDPASLSGGSEEIPPDPVLDGVTLPPPGEQAAHDRLHAFLRGPLGDYARHRDEPAADV 221 Query: 242 TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFS----WLNELIWREFYRHLMAF 297 TS+LSPYL G + PR + ++ GA + +E+ WREFY ++A Sbjct: 222 TSRLSPYLKWGCIHPRTVLDGVRTATAPSTDGATDGATEAAEKFRSEIAWREFYADVLAA 281 Query: 298 YPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMIT 357 PS ++ + +AWK G TG+PI+DA MRQL GW+HNR+RMI Sbjct: 282 NPSSARSD-LSETLARMSYEPPGESFEAWKWGRTGYPIVDAGMRQLLAEGWVHNRVRMIE 340 Query: 358 ASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKR 417 ASF+ KDL V W G +++ +L+DGDLASNN GWQW A TG D+ PYFR+FNP QG+R Sbjct: 341 ASFVCKDLHVHWAHGARWYLERLVDGDLASNNHGWQWTAGTGTDAAPYFRVFNPVSQGRR 400 Query: 418 FDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477 FDP G +IR W+PEL +P + +H P W YP PIVDH L ++ A Sbjct: 401 FDPDGEYIRRWVPELRGLPAELVHEP--WKCPGGPPNGYPGPIVDHAVERRDALARHAQA 458 Query: 478 KKQS 481 + S Sbjct: 459 RNAS 462 >gi|260427905|ref|ZP_05781884.1| deoxyribodipyrimidine photo-lyase [Citreicella sp. SE45] gi|260422397|gb|EEX15648.1| deoxyribodipyrimidine photo-lyase [Citreicella sp. SE45] Length = 475 Score = 231 bits (588), Expect = 2e-58, Method: Compositional matrix adjust. Identities = 162/483 (33%), Positives = 229/483 (47%), Gaps = 41/483 (8%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGI---SARQSHFIYASLLQ 67 +VW+R DLR+TD+ AL+ A S VI VFI R HG+ A + L Sbjct: 10 IVWIRRDLRLTDHAALHEAG-RSGRPVIPVFI------RDHGVDSLGAAPKWRLGQGLGH 62 Query: 68 VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127 K L KG + E L++ + +++ R Y+ + RD ++ L Sbjct: 63 FAKLLGDKGSRLVLRAGP----AREVLEALIDETAAGAVWWQRAYDPAAIERDTAVKAAL 118 Query: 128 QHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 + R +SF +L P ++ YKVY+PF +A+ + V L P+ +LT Sbjct: 119 KDRGTDVRSFAGHLLFEPWTVETKQGGYYKVYSPFWRAVCERDVP---EPLAAPS-KLTP 174 Query: 187 PVTPSNIPRFFDYPFQA--------IDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPA 238 P + D+ A ++ +GE+ A L F V Y + R++ A Sbjct: 175 PESWPEGEALDDWQLGAAMRRGGPVVEAHVRLGEETAQARLGAFMANGVDGYKDGRNLVA 234 Query: 239 IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFY 298 G S LS LS+G +SP QCW+ + K+GA +W EL+WREF HLM Sbjct: 235 EDGCSGLSENLSLGEISPAQCWHAA----MRARDAGKAGAETWAKELVWREFAYHLMWHT 290 Query: 299 PSVCMGKPFIPWTEKIEWNKDSHLLQ--AWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMI 356 P + W + WNKD + AWK+ TG P +DAA+R++ G MHNR RMI Sbjct: 291 PHLLEDNWREEW-KAFPWNKDERRREVIAWKRARTGIPFVDAALREMYVTGRMHNRARMI 349 Query: 357 TASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGK 416 AS+L K L+ W+IG ++F L D D ASN GWQW A +G D+ PYFR+FNP Q + Sbjct: 350 VASYLTKHLMCHWKIGLDWFEDCLTDWDPASNALGWQWTAGSGPDAAPYFRVFNPITQRE 409 Query: 417 RFDPQGTFIRHWLPELNNVPT----QYIHA-PHSWLDKNDLSLNYPLPIVDHKKACHHTL 471 +FDP +IR W+ E PT Y A P SW D YP P+V + L Sbjct: 410 KFDPDRAYIRRWIAEGEGTPTDTALSYFDAIPESWAMSPDDP--YPEPVVSAEDGRKAAL 467 Query: 472 NQY 474 Y Sbjct: 468 AAY 470 >gi|317123324|ref|YP_004097436.1| deoxyribodipyrimidine photo-lyase type I [Intrasporangium calvum DSM 43043] gi|315587412|gb|ADU46709.1| deoxyribodipyrimidine photo-lyase type I [Intrasporangium calvum DSM 43043] Length = 455 Score = 231 bits (588), Expect = 2e-58, Method: Compositional matrix adjust. Identities = 156/493 (31%), Positives = 228/493 (46%), Gaps = 58/493 (11%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M+V ++W R DLR++D+ AL AA +S V+ VF+ P R +S + SL Sbjct: 1 MTVSVLWFRRDLRVSDHPALLAAL-DSGTSVLPVFVLDP---RLLETGQPRSRRLITSLR 56 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 + SL H + ++ + + + R+ RD +E Sbjct: 57 ALADSLDG-------HLVVRTGNPVDVIPQVAREVGAESVHVTRETTPFGRTRDAAVEVA 109 Query: 127 LQ---HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIR 183 LQ R++ PG ++ + Y+V+TPF +A + P PA Sbjct: 110 LQSEGRRLVATGT--PYAAGPGLVVTQSGAPYRVFTPFARAWRAH-------GSPPPA-- 158 Query: 184 LTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHI------------LRKFCKEKVYYYV 231 P IP +FD + P L + ++ Y Sbjct: 159 ----APPLRIP-WFDGDVGGL--ALPAVAAAGGPGGIAGEAAARTRWLDFLAEGRLGRYA 211 Query: 232 EQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKS---GAFSWLNELIWR 288 E RD P + TS++S L G + PR D+ P GA +++ EL WR Sbjct: 212 EDRDRPDLDATSRMSVPLKYGEIHPRTL-------LADIASHPDGRTGGAATFVTELAWR 264 Query: 289 EFYRHLMAFYPSVCMG--KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTI 346 EFY ++ P +P + + + L+ AW++G TG+PI+DA MRQL Sbjct: 265 EFYADVLWHRPESAWEDLRPDLGRMSYDDGPETDRLVAAWREGRTGYPIVDAGMRQLLGE 324 Query: 347 GWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYF 406 GWMHNRLRMITASFL KDL V W +G YF+ QLLDGD+ASN+ GWQW A TG D+ PYF Sbjct: 325 GWMHNRLRMITASFLTKDLHVWWPVGARYFLDQLLDGDIASNSHGWQWVAGTGTDAAPYF 384 Query: 407 RIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKA 466 R+ NP Q RFDP+G ++R W+PEL ++ +H P W N + YP +VDH Sbjct: 385 RVLNPLRQAHRFDPEGDYVRRWVPELGHLAGPAVHEP--WDHPNGYAHGYPGRVVDHDAE 442 Query: 467 CHHTLNQYYAAKK 479 L +Y +++ Sbjct: 443 RREALARYELSRR 455 >gi|294626579|ref|ZP_06705177.1| photolyase [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] gi|292599146|gb|EFF43285.1| photolyase [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] Length = 484 Score = 231 bits (588), Expect = 3e-58, Method: Compositional matrix adjust. Identities = 167/488 (34%), Positives = 241/488 (49%), Gaps = 33/488 (6%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQ---WRQHGISARQSHFIYA 63 MS +VW R DLR+ DN AL AA ++ I ++I P + W S H A Sbjct: 13 MSYAIVWFRRDLRLEDNPALRAAL-DAGHHPIPLYIDAPHEEGEWTPGAASRTWRHRSLA 71 Query: 64 SLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLL 123 +L ++L G+V + +S + LD Q +++NR+YE RD + Sbjct: 72 ALDGALRALG-SGLVIR------VGNSAQVLDEVIAQTGAVAVYWNRKYEPATQPRDAQI 124 Query: 124 EKRLQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPF-RKALIQNLVQADL---RSLP 178 ++ L+ R I +S + ++L P + YKV+TPF R AL Q + A + RSLP Sbjct: 125 KRDLRERGIEVQSCNCALLFEPWQLSTQQGGPYKVFTPFWRNALTQLQLPAAMGAPRSLP 184 Query: 179 -VPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIP 237 +PA T + + + Q + GE A +L F + Y E RD P Sbjct: 185 PLPASLKTDALDMLQLVPGVQWD-QGFWEHWRPGEAGAHEMLEIFIDGALSGYRENRDRP 243 Query: 238 AIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAF--SWLNELIWREFYRHLM 295 GTSQLSP+L G ++P + + L+ ++GA ++ +L WR+F HL+ Sbjct: 244 DRVGTSQLSPHLHFGEIAPWRIASTLETHRT-----ARNGAEIDGYIRQLGWRDFAYHLL 298 Query: 296 AFYPSVCMGKPFIPWTEKIEWNK-DSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLR 354 +P + P +W D LQAW++G TG PI+DA MRQL GWMHNR+R Sbjct: 299 HHFPDTT-NQNLNPRFAGFDWATVDPVALQAWQRGRTGIPIVDAGMRQLWHTGWMHNRVR 357 Query: 355 MITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQ 414 MI ASFL K L + W G +F L+D DLA+N GWQW A TG D+ PYFR+FNP Q Sbjct: 358 MIVASFLCKHLRIHWIEGARWFWDTLVDADLANNTLGWQWVAGTGADAAPYFRVFNPVTQ 417 Query: 415 GKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYP----LPIVDHKKACHHT 470 ++FDPQ +I W+PEL + + AP WL L+ P PI+ + Sbjct: 418 AEKFDPQAAYITRWVPELGKLAVKERFAP--WLHPLSLARVAPQYPRAPIIGLAEGRDAA 475 Query: 471 LNQYYAAK 478 L Y ++ Sbjct: 476 LAAYTKSR 483 >gi|83718773|ref|YP_442347.1| deoxyribodipyrimidine photolyase [Burkholderia thailandensis E264] gi|257138547|ref|ZP_05586809.1| deoxyribodipyrimidine photolyase [Burkholderia thailandensis E264] gi|83652598|gb|ABC36661.1| deoxyribodipyrimidine photolyase [Burkholderia thailandensis E264] Length = 486 Score = 231 bits (588), Expect = 3e-58, Method: Compositional matrix adjust. Identities = 157/496 (31%), Positives = 239/496 (48%), Gaps = 30/496 (6%) Query: 1 MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHF 60 M + + + +VW R+DLR++D+ AL A S VI V++ E+ + + Sbjct: 1 MSSFDSTAPAVVWFRDDLRVSDHPAL-ARAAESGRPVIGVYV-FDERAGGRALGGAARWW 58 Query: 61 IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120 ++ SL + +L+ G + D + S+ +++NR+Y + D Sbjct: 59 LHGSLRALDAALAGLGGRLVLLRGDEADTFV----SFVAALGAGAVYWNRRYAFAQRALD 114 Query: 121 KLLEKRLQ-HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPV 179 ++ L RV ++F+ S+L P I+N + Y+V+ + +A ++ + Sbjct: 115 NAVQTALDARRVAVETFNASLLFEPDDIVNGDGRPYQVFGAYWRAALR---RGAPPPPLA 171 Query: 180 PAIRLTGPVTPSNIPRF-FDYPFQAIDPMFP-----------IGEQNALHILRKFCKEKV 227 RL G P + R + ++P P GE A +LR F ++ Sbjct: 172 APRRLNGGALPEALARRRVELDALGLEPTRPDWAGGLRDAWRFGEDAAHSLLRAFVDSRL 231 Query: 228 YYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIW 287 Y +RD P I TS+LSPY+ G LS RQ W + ++ +L+EL W Sbjct: 232 GGYATERDRPGIASTSRLSPYVRFGNLSVRQIWQAAVDAHAHRAAT-QADLDKFLSELGW 290 Query: 288 REFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIG 347 REF + +P + + + + W D L AW++G TG+P +DA MR+L G Sbjct: 291 REFCWAQLYRFPDLPR-RNLRHTLDGMPWRDDPAGLAAWRRGATGYPFVDAGMRELWATG 349 Query: 348 WMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFR 407 WMHNR RM+ ASFLVK LL+DWR GE +F L+D D ASN WQW A G D+ PYFR Sbjct: 350 WMHNRARMVCASFLVKHLLIDWREGEAWFWDTLVDADAASNAANWQWVAGCGADAAPYFR 409 Query: 408 IFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND------LSLNYPLPIV 461 IFNP QGK+FDP G ++R W+PEL +P IH P + L YP+P+V Sbjct: 410 IFNPVAQGKKFDPDGAYVRRWVPELAGLPPAAIHEPWAAPPAQLAAAGVRLGDTYPVPVV 469 Query: 462 DHKKACHHTLNQYYAA 477 H A L+ + A Sbjct: 470 AHDAARRRALDAFATA 485 >gi|190573805|ref|YP_001971650.1| putative DNA photolyase [Stenotrophomonas maltophilia K279a] gi|190011727|emb|CAQ45346.1| putative DNA photolyase [Stenotrophomonas maltophilia K279a] Length = 473 Score = 230 bits (587), Expect = 3e-58, Method: Compositional matrix adjust. Identities = 155/466 (33%), Positives = 227/466 (48%), Gaps = 23/466 (4%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 +SV LVW R DLR+ DN AL AA ++ V+ V+I P + + A + + SL Sbjct: 3 VSVALVWFRRDLRLQDNPALQAAL-DAGHDVVPVYIHAPHEEGEWAPGAASDAWRHRSLA 61 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 + L +G DS+ L Q +++NR+YE RD +++ Sbjct: 62 ALDADLRTRGSSLVLRSG----DSLPALQLLIAQTGAEAVYWNRKYEPATQPRDATIKRM 117 Query: 127 LQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLP---VPAI 182 L+ + I +S + S+L P I Q YKV+TP+ + ++ + L++ P P Sbjct: 118 LREQGIDAQSCNGSLLFEPWDIATQQGQPYKVFTPYWRNVLSHWRLPALQAAPEALAPHA 177 Query: 183 RLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGT 242 + + + D+ + P GE AL L F + Y EQRD+P GT Sbjct: 178 VDSLALDDLQLAPTLDWDTGFWEHWQP-GEAGALEALSVFEDGALRGYREQRDLPDRVGT 236 Query: 243 SQLSPYLSIGVLSP---RQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYP 299 S+LSP+L G ++P L+ D I +L +L WR+F HL+ +P Sbjct: 237 SRLSPHLHFGEIAPWRIAHALEGLRSAGTDADID------GYLRQLGWRDFAYHLLHHFP 290 Query: 300 SVCMGKPFIPWTEKIEWNKDSHL-LQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITA 358 P ++ W S L AW++G TG PI+DA +R+L G+MHNR+RMI A Sbjct: 291 KTPTDN-LNPRFDRFPWATPSEAQLHAWQRGNTGVPIVDAGLRELWHTGYMHNRVRMIVA 349 Query: 359 SFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRF 418 S+L K L W G +F L+D DLA+N GWQW A TG D+ PYFR+FNP Q ++F Sbjct: 350 SYLCKHLRAHWLHGARWFWDTLVDADLANNTMGWQWVAGTGADAAPYFRVFNPVTQAEKF 409 Query: 419 DPQGTFIRHWLPELNNVPTQYIHAP--HSWLDKNDLSLNYPLPIVD 462 DPQ +I W+PEL +P + AP H L P P+VD Sbjct: 410 DPQARYISRWVPELAALPVKARFAPWQHPLLLATHAPGYPPTPLVD 455 >gi|148260613|ref|YP_001234740.1| deoxyribodipyrimidine photo-lyase [Acidiphilium cryptum JF-5] gi|146402294|gb|ABQ30821.1| deoxyribodipyrimidine photo-lyase type I [Acidiphilium cryptum JF-5] Length = 471 Score = 230 bits (587), Expect = 3e-58, Method: Compositional matrix adjust. Identities = 160/492 (32%), Positives = 234/492 (47%), Gaps = 39/492 (7%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M+ L+WLRNDLR+ DN AL AA + V+ VF+ P + G ++R +++ SL Sbjct: 1 MATTLLWLRNDLRLADNPALAAAIEEGN--VLPVFVLDPAA--ETGGASRW--WLHHSLA 54 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 ++ + +G + D+ + + + + R +E D+ + Sbjct: 55 ALEADFTARGGRLVLRR----GDAAAIVPALAREIGAVAVHAGRAHEPWLREADRRVAAA 110 Query: 127 LQHRVICKSFDDSVLL-PPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185 LQ I S L+ P I +Y VYTPF +A RL Sbjct: 111 LQEAGIGFHRHRSALMFGPERITTRTGGVYGVYTPFSRACFDAFAPRPPIPA---PARLA 167 Query: 186 GPVTPSNIPRFFDYPFQAIDP--------MFPIGEQNALHILRKFCKEKVYYYVEQRDIP 237 P R D+ + P + GE A L F + Y QRD+P Sbjct: 168 AAGDPGG-DRLGDWGLLPVKPDWAGGLRASWTPGEAGARARLDAFLADGFGEYDRQRDLP 226 Query: 238 AIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAF--SWLNELIWREFYRHLM 295 I GTS LSP+L G ++ W + P A ++L ELIWREF +L+ Sbjct: 227 GIAGTSGLSPHLHWGEIAIDAVWR-------AAVAAPGRDAARQTFLKELIWREFAAYLL 279 Query: 296 AFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRM 355 P + +P + W + + L AW++G TG PI+DA MRQL GWMHNR+RM Sbjct: 280 WHTPDLAT-RPMKAQFAAMPWRESAADLAAWQRGRTGVPIVDAGMRQLWQTGWMHNRVRM 338 Query: 356 ITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQG 415 I ASFLVK LL+ W+ GE +F L+D D ASN WQW A +G D+ PYFRIFNP +QG Sbjct: 339 IVASFLVKHLLLPWQAGERWFHDCLVDADAASNAASWQWVAGSGADAAPYFRIFNPVLQG 398 Query: 416 KRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLD------KNDLSLNYPLPIVDHKKACHH 469 ++FDP G ++R ++PE+ N+P +Y+HAP + L +YP P+VD + Sbjct: 399 RKFDPDGAYVRRFVPEIANLPDKYLHAPWEAPEIVLRGAGVRLGASYPRPVVDLAEGRER 458 Query: 470 TLNQYYAAKKQS 481 L + A ++ Sbjct: 459 ALAAFAAISGKA 470 >gi|330991596|ref|ZP_08315547.1| Cryptochrome-2 [Gluconacetobacter sp. SXCC-1] gi|329761615|gb|EGG78108.1| Cryptochrome-2 [Gluconacetobacter sp. SXCC-1] Length = 465 Score = 230 bits (587), Expect = 3e-58, Method: Compositional matrix adjust. Identities = 152/466 (32%), Positives = 239/466 (51%), Gaps = 37/466 (7%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 ++W R+DLR+ DN AL A + VI +++ P G +AR +++ +L ++ Sbjct: 8 IMWFRDDLRLADNPALSDAA--ASGPVICLYVHDPAL--APGSAARW--WLHGALTALED 61 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH- 129 L +G C + + + Q + +NR+Y + D ++ L+ Sbjct: 62 DLRARGGRL----CIMAGPAWQCVLRLARQAGAGAVVWNRRYGGAARQVDARIKLALKDM 117 Query: 130 RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKAL---------IQNLVQADLRSLPVP 180 V +S ++L P + ++VYTP+ +A+ + +LP P Sbjct: 118 GVQARSHRGNMLHEPWQVRTRQGAPFRVYTPWWRAVRAMGAPLPPLPVPAALGFAALP-P 176 Query: 181 AIRLTGPVTPSNI---PRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIP 237 A+ G V+ S + P D+ Q + + GEQ A L F ++ Y RD+P Sbjct: 177 AVE-DGLVSLSALGLQPTRPDW-AQGLRDTWQPGEQAAHARLATFMATRLPGYARLRDLP 234 Query: 238 AIQGTSQLSPYLSIGVLSPRQCWNRLKEEF-VDLLIKPKSGAFSWLNELIWREFYRHLMA 296 A TS LSP L G +SPRQ W+ ++ + VD + +L+E+ WR+F + Sbjct: 235 ARPATSGLSPCLRFGHISPRQIWHAVEAQGDVD------ADGMCFLSEVGWRDFAHATLF 288 Query: 297 FYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMI 356 P + + P +++ W D L+AW+QG TG+PI+DA MR+L GWMHNR+RMI Sbjct: 289 DCPDMAT-RSLRPEYDRMPWRTDPAGLRAWQQGRTGYPIVDAGMRELWHTGWMHNRVRMI 347 Query: 357 TASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGK 416 ASFL K LL+DWR GE +F L+D D ASN WQW A G D+ PYFRIFNP +QG+ Sbjct: 348 VASFLTKHLLLDWRAGERWFADTLVDADGASNPFNWQWVAGCGLDAAPYFRIFNPVLQGE 407 Query: 417 RFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVD 462 +FDP+G ++R W+PE+ ++ + +H P + + YP P+VD Sbjct: 408 KFDPEGDYVRRWVPEIAHLAGRAVHTPWKF---PHVHRGYPAPVVD 450 >gi|84502965|ref|ZP_01001067.1| deoxyribodipyrimidine photolyase [Oceanicola batsensis HTCC2597] gi|84388710|gb|EAQ01581.1| deoxyribodipyrimidine photolyase [Oceanicola batsensis HTCC2597] Length = 472 Score = 230 bits (587), Expect = 4e-58, Method: Compositional matrix adjust. Identities = 158/480 (32%), Positives = 236/480 (49%), Gaps = 38/480 (7%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 L+W R DLR++D+ AL A + VI VFI G+ A + L + Sbjct: 9 LLWFRRDLRLSDHPALTQAA--ARGPVIPVFIHDDSV---AGLGAAPKWRLGEGLAVFRD 63 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130 +L+++G + + E L+ + T +++ R Y+ + + RD ++ L R Sbjct: 64 ALAERGARLILRRGP----AREVLERLIDETGATAVYWTRAYDPDAIERDSRVKAALADR 119 Query: 131 -VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189 SF ++ P + +MY+VY+P+ +A+ V LR A L+ P Sbjct: 120 GTEACSFPGHLIFEPWEVETQQGKMYQVYSPYWRAVKDREVDRPLR-----APDLSAPSK 174 Query: 190 PSNIPRFFDYPFQA--------IDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQG 241 + D+ A + GE A L F +++ Y E+RD+PA Sbjct: 175 WPDSEALEDWHLGAGMNRGAAIVARHCTPGEGAAQSRLGAFSAQRLEDYKERRDMPAEDA 234 Query: 242 TSQLSPYLSIGVLSPRQCWNR-LKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPS 300 TS +S YL++G +SPRQ W+ L+ E + KSGA + E++WREF HLM P Sbjct: 235 TSDMSQYLTLGEISPRQLWHAALRGE-----AEGKSGAEHFRKEVVWREFAYHLMYHTPR 289 Query: 301 VCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASF 360 + W +DS ++ WKQG TG +DAAMR++ G MHNR RM+ AS+ Sbjct: 290 LLDENWREGWEAFCWSEEDSEAVRRWKQGRTGVRFVDAAMREMYVTGRMHNRSRMVVASY 349 Query: 361 LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDP 420 L K +LV WRIG+++F L+D D ASN+ GWQW A G D+ PYFR+FNP Q ++FD Sbjct: 350 LTKHMLVHWRIGQKWFQDCLIDWDPASNSMGWQWVAGCGPDASPYFRVFNPDTQLEKFDR 409 Query: 421 QGTFIRHWLPELNNVPTQ----YIHA-PHSW-LDKNDLSLNYPLPIVDHKKACHHTLNQY 474 G ++ WL E + P+ Y A P SW L D +YP P+VD K+ L Y Sbjct: 410 DGRYVARWLAECSRSPSDTALSYFDAIPESWGLSPED---DYPEPVVDLKEGRRRALAAY 466 >gi|260062651|ref|YP_003195731.1| deoxyribodipyrimidine photolyase-class I [Robiginitalea biformata HTCC2501] gi|88784218|gb|EAR15388.1| deoxyribodipyrimidine photolyase-class I [Robiginitalea biformata HTCC2501] Length = 434 Score = 230 bits (587), Expect = 4e-58, Method: Compositional matrix adjust. Identities = 154/477 (32%), Positives = 229/477 (48%), Gaps = 51/477 (10%) Query: 6 AMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASL 65 SV++ W R DLR+ DN+ L A + V+ +FI E + F++ L Sbjct: 2 GKSVNIFWFRRDLRLEDNRGLCEAL-GAGRPVLPIFIFDSEILDGLPADDPRVTFLHDRL 60 Query: 66 LQVQKSL--SQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLL 123 +++ + +Q + YH +E V ++F NR YE RD+ + Sbjct: 61 QELRSRMQENQGSSLAIYHG-----KPLEIFKELASDWDVGQVFTNRDYEPYARDRDEQV 115 Query: 124 EKRLQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAI 182 + L + I +F D V+ ++ Y VYTP+ K Q L + A Sbjct: 116 GQWLSEQGIEFHTFKDQVIFEKDEVVKDDGDPYVVYTPYMKKWKQVFRDTPLATFD-SAG 174 Query: 183 RLTGPVTPSNIPR--FFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ 240 +L + S +P D+ F+ P+ + + L + Y + R+ PA + Sbjct: 175 QLGNLIAHSRLPNPDLADFGFER--SAIPVPDYDMGGKL-------IDAYEDNRNYPARE 225 Query: 241 GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPS 300 GTS+L P+L G +S RQ + E S ++ NELIWREF+ ++ +P Sbjct: 226 GTSRLGPHLRFGTISIRQALGKALE----------SSNETFWNELIWREFFMQILWHFPR 275 Query: 301 VCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASF 360 + F ++I W D + W++G TGF ++DA MRQLN G+MHNR+RM+TASF Sbjct: 276 TVH-EAFRKEYDRIAWRNDESEFEKWREGRTGFALVDAGMRQLNASGYMHNRVRMLTASF 334 Query: 361 LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDP 420 L K LL+DWR GE YF +LLD ++ASN G WQWAA +G D+ PYFRIFNP Q +FD Sbjct: 335 LCKHLLIDWRWGEAYFAEKLLDYEMASNVGNWQWAAGSGVDAAPYFRIFNPMTQVDKFDK 394 Query: 421 QGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477 ++IR W+PE + +YP +VDHK A L Y AA Sbjct: 395 DKSYIREWIPEYG-------------------TEDYPEKMVDHKAARERCLKTYKAA 432 >gi|87123064|ref|ZP_01078915.1| Deoxyribodipyrimidine photolyase [Synechococcus sp. RS9917] gi|86168784|gb|EAQ70040.1| Deoxyribodipyrimidine photolyase [Synechococcus sp. RS9917] Length = 493 Score = 230 bits (587), Expect = 4e-58, Method: Compositional matrix adjust. Identities = 161/487 (33%), Positives = 228/487 (46%), Gaps = 47/487 (9%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSH----FIYASLL 66 L W R DLR+ DN L AA A V V + P + F+ SL+ Sbjct: 7 LFWHRRDLRLADNTGLQAAVGLGPA-VTGVVVLDPAILSPPPHLPPMAPARLWFLVESLI 65 Query: 67 QVQKSLSQKG---IVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLL 123 ++Q+ + G +V + LD+ + ++R E RD+ + Sbjct: 66 ELQQRWREAGSRLLVVAGDPATVLPRLASLLDA-------PAVVWSRDVEPYARERDRAV 118 Query: 124 EKRLQHRVICKSFD-DSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPA- 181 + LQ D D +L+ P + Y+VY PF + + +++ ++ P+ Sbjct: 119 ARALQADGRKVLVDWDQLLVNPELLKTGGGDPYRVYGPFLRNWRGQVERSEPSTVASPSG 178 Query: 182 ---------------------IRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILR 220 + L G ++ + + P P GE A L Sbjct: 179 LIDLEPETLALISSGEGELGRLCLEGQRQLEHLRAAHGFAGIELCPCRP-GEAAAAEQLA 237 Query: 221 KFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFS 280 F + Y R++P++ GTS LS LS+G LSPRQ W +E + + A + Sbjct: 238 TFVAGPLMAYEPDRNVPSVVGTSSLSAALSVGTLSPRQAWCAAQEVKQCVRSDEQLQAIT 297 Query: 281 -WLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAA 339 W EL WREFY+ + +P + G P+ P + W + WK G TG PIIDAA Sbjct: 298 VWEQELGWREFYQQALFHFPELADG-PYRPQWRRFPWENNDDWFDFWKDGQTGMPIIDAA 356 Query: 340 MRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTG 399 MRQLN GWMHNR RMI AS+LVKDL+ DWR GE FM +DGDLA+NNGGWQW+AS+G Sbjct: 357 MRQLNQTGWMHNRCRMIVASYLVKDLICDWRWGERAFMELEVDGDLAANNGGWQWSASSG 416 Query: 400 NDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQ-YIHAPHSWLDKNDLSLNYPL 458 D P RIFNP Q +FD +G +IR WLPEL +V T + L++ YP Sbjct: 417 MDPKP-LRIFNPATQASKFDAEGEYIRRWLPELRHVNTNDLLSGEIPALERR----GYPE 471 Query: 459 PIVDHKK 465 P+V+HK Sbjct: 472 PLVNHKS 478 >gi|226308066|ref|YP_002768026.1| deoxyribodipyrimidine photo-lyase [Rhodococcus erythropolis PR4] gi|226187183|dbj|BAH35287.1| deoxyribodipyrimidine photo-lyase [Rhodococcus erythropolis PR4] Length = 444 Score = 230 bits (586), Expect = 4e-58, Method: Compositional matrix adjust. Identities = 146/471 (30%), Positives = 229/471 (48%), Gaps = 31/471 (6%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 +VW R DLR+ D L AA ++ + + +F+ G S RQ ++A+L + Sbjct: 1 MVWFRRDLRVGDLPILSAAS-DAGGRTLGLFVLDENLLGPAG-SPRQDQ-LFANLTALDH 57 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130 L K +V + D + + ++ + Y RRD + ++++ Sbjct: 58 QLDGKLMVVR-------GDPADVVPRVAESVGAEEVHISADYGPYGRRRDAAVAEQVELI 110 Query: 131 VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTP 190 + + PG + YKV+TP+ + +++ + S +R P Sbjct: 111 ATGSPY----AVAPGRVTKADGDPYKVFTPYFRQWMEHGWRGPA-STDAQTVRWFDPSDK 165 Query: 191 SNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLS 250 PR P + +GE AL +++C+ + Y ++R+ P + TS++S L Sbjct: 166 EGGPRRVSIPAPSASVSDFVGEVGALEQWKEYCENDLDRYDDERNRPDLDTTSRMSIPLK 225 Query: 251 IGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPW 310 G + PR DL + GA ++ +L WR+FY ++ P K + Sbjct: 226 YGTIHPRTM-------LADLSKRLGDGAQAYRRQLAWRDFYADILFQRPDSAR-KNYDDK 277 Query: 311 TEKIEWNKD---SHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLV 367 +++ + AW +G TGFPI+DA MRQL WMHNR+RMI ASFLVKDL + Sbjct: 278 FDRLRHDGGVDADAAFTAWCEGKTGFPIVDAGMRQLAAENWMHNRVRMIVASFLVKDLHI 337 Query: 368 DWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRH 427 W G +FMS L+DGDLASN GWQW A +G D+ P+FR+FNP QG++FDP GT++R Sbjct: 338 PWWRGARFFMSHLVDGDLASNQHGWQWTAGSGTDASPFFRVFNPITQGEKFDPDGTYVRR 397 Query: 428 WLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478 W+PEL +VP + +H+ K ++YP PIVDH L +Y K Sbjct: 398 WVPELRDVPGKAVHSL-----KAMRPVDYPDPIVDHAHEREEALRRYGEIK 443 >gi|149279055|ref|ZP_01885189.1| deoxyribodipyrimidine photolyase-class I [Pedobacter sp. BAL39] gi|149230334|gb|EDM35719.1| deoxyribodipyrimidine photolyase-class I [Pedobacter sp. BAL39] Length = 433 Score = 230 bits (586), Expect = 4e-58, Method: Compositional matrix adjust. Identities = 149/472 (31%), Positives = 225/472 (47%), Gaps = 47/472 (9%) Query: 8 SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67 + + WLR DLR+ D+ ALY A V+ +FI + + + FIY ++ + Sbjct: 4 EISICWLRRDLRLEDHTALYHALKGPHP-VLLLFIFDTNILSKLPVKDARVTFIYNTIKE 62 Query: 68 VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127 + + L+Q S E ++ Y +V +F N YE RD L + L Sbjct: 63 LNEQLAQHDSSIVVKHGSPEKAWTELMEEY----QVKSVFTNHDYEPYAAERDDSLAEFL 118 Query: 128 QHRVIC-KSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPA-IRLT 185 + I ++ D V+ I+ + Y V+TP+ K ++ L ++ P+ ++ Sbjct: 119 RSEHISFHTYKDQVIFEKDEIVKADGKPYTVFTPYYKQWLRKLDDFYIKPYPIKKYLKHL 178 Query: 186 GPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245 + +IP D F+A FP + K+ Y + RD P T+ + Sbjct: 179 LKIKRQHIPSLSDMGFEASAQKFPSED----------FSRKLDAYEKLRDFPGADATTHI 228 Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305 +L G +S R + K + + WL+EL WR+FY ++ +P + Sbjct: 229 GMHLRFGTVSIRHAAAQAKTQQAE----------KWLSELAWRDFYMMILWHFPHT-VNS 277 Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365 F P I+W + +AW QG TG+P++DA MRQLN G+MHNR+RM+ ASFL K L Sbjct: 278 AFKPAYNNIKWRNNEDEFEAWCQGNTGYPLVDAGMRQLNATGYMHNRVRMVVASFLSKHL 337 Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425 L+DW+ GE YF +LLD ++ASN GGWQWA GND+ PYFR+FNP +Q K+FDP +I Sbjct: 338 LIDWKWGETYFAEKLLDYEMASNVGGWQWACGCGNDAAPYFRVFNPELQMKKFDPDFKYI 397 Query: 426 RHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477 WLPE + H P PIV+H A L + AA Sbjct: 398 DKWLPEYK----KQKHVP---------------PIVEHAFARERILKVFKAA 430 >gi|326403807|ref|YP_004283889.1| deoxyribodipyrimidine photo-lyase [Acidiphilium multivorum AIU301] gi|325050669|dbj|BAJ81007.1| deoxyribodipyrimidine photo-lyase [Acidiphilium multivorum AIU301] Length = 471 Score = 230 bits (586), Expect = 4e-58, Method: Compositional matrix adjust. Identities = 160/492 (32%), Positives = 233/492 (47%), Gaps = 39/492 (7%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M+ L+WLRNDLR+ DN AL AA + V+ VF+ P + G ++R +++ SL Sbjct: 1 MATTLLWLRNDLRLADNPALAAAIEEGN--VLPVFVLDPAA--ETGGASRW--WLHHSLA 54 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 ++ + +G + D+ + + + + R +E D+ + Sbjct: 55 ALEADFAARGGRLVLRR----GDAAAIVPALAREIGAVAVHAGRAHEPWLREADRRVAAA 110 Query: 127 LQHRVICKSFDDSVLL-PPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185 LQ I S L+ P I +Y VYTPF +A RL Sbjct: 111 LQEAGIGFHRHRSALMFGPERITTRTGGVYGVYTPFSRACFDAFAPRPPIPA---PARLA 167 Query: 186 GPVTPSNIPRFFDYPFQAIDP--------MFPIGEQNALHILRKFCKEKVYYYVEQRDIP 237 P R D+ + P + GE A L F + Y QRD+P Sbjct: 168 AAGDPGG-DRLGDWGLLPVKPDWAGGLRASWTPGEAGARARLDAFLADGFGEYDRQRDLP 226 Query: 238 AIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAF--SWLNELIWREFYRHLM 295 + GTS LSP+L G ++ W + P A ++L ELIWREF +L+ Sbjct: 227 GVAGTSGLSPHLHWGEIAIDAVWR-------AAVAAPGRDAARQTFLKELIWREFAAYLL 279 Query: 296 AFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRM 355 P + +P + W + + L AW+ G TG PI+DA MRQL GWMHNR+RM Sbjct: 280 WHTPDLAT-RPMKAQFAAMPWRESAADLAAWQHGRTGVPIVDAGMRQLWQTGWMHNRVRM 338 Query: 356 ITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQG 415 I ASFLVK LL+ W+ GE +F L+D D ASN WQW A +G D+ PYFRIFNP +QG Sbjct: 339 IVASFLVKHLLLPWQAGERWFHDCLVDADAASNAASWQWVAGSGADAAPYFRIFNPVLQG 398 Query: 416 KRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLD------KNDLSLNYPLPIVDHKKACHH 469 ++FDP G ++R ++PE+ N+P +Y+HAP + L +YP PIVD + Sbjct: 399 RKFDPDGAYVRRFVPEIANLPDKYLHAPWEAPEIVLRGAGVRLGASYPRPIVDLAEGRER 458 Query: 470 TLNQYYAAKKQS 481 L + A ++ Sbjct: 459 ALAAFAAISGKA 470 >gi|114764326|ref|ZP_01443554.1| deoxyribodipyrimidine photolyase [Pelagibaca bermudensis HTCC2601] gi|114543274|gb|EAU46291.1| deoxyribodipyrimidine photolyase [Roseovarius sp. HTCC2601] Length = 473 Score = 230 bits (586), Expect = 4e-58, Method: Compositional matrix adjust. Identities = 159/486 (32%), Positives = 235/486 (48%), Gaps = 47/486 (9%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGI---SARQSHFIYASLLQ 67 +VW+R DLR++D+ L+ A S VI VFI R H + A + L Sbjct: 8 IVWIRRDLRLSDHATLHEA-GKSGRPVIPVFI------RDHTVDQLGAAPKWRLGLGLGC 60 Query: 68 VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127 ++L++KG + E LD+ + +++ R Y+ V RD ++ L Sbjct: 61 FGEALAEKGSRLILRAGP----AREVLDALIDETGAGAVWWQRAYDPASVERDTAVKSAL 116 Query: 128 QHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 + R I +SF +L P ++ YKVYTPF +A+ V LP P+ +L Sbjct: 117 KDREIDARSFAGHLLFEPWTVETKQGGFYKVYTPFWRAVCDRDVP---EPLPAPS-KLAA 172 Query: 187 PVTPSNIPRFFDYPF--------QAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPA 238 P + D+ ++P +GE+ A L F K+ Y + R++ A Sbjct: 173 PESWPESDALDDWGLGDAMRRGAAVVEPYVQLGERAAQARLGAFTSGKIADYDKGRNLVA 232 Query: 239 IQGTSQLSPYLSIGVLSPRQCWN---RLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLM 295 G S LS L++G +SP QCW+ R K+ K GA +W EL+WREF HL+ Sbjct: 233 EDGCSTLSENLALGEISPAQCWHAAMRAKD-------AGKEGAETWAKELVWREFAYHLL 285 Query: 296 AFYPSVCMGKPFIPWTEKIEWNKDSHLLQ--AWKQGYTGFPIIDAAMRQLNTIGWMHNRL 353 P + W WN+D + AWK+ TG P +DAA+R++ G MHNR Sbjct: 286 WHTPHLAESNWREEWA-AFPWNEDERRKEVIAWKRARTGIPFVDAALREMYVTGRMHNRA 344 Query: 354 RMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTI 413 RMI AS+L K L+ W+IG ++F L+D D ASN GWQW+A +G D+ PYFR+FNP Sbjct: 345 RMIVASYLTKHLMCHWKIGMDWFEDCLIDWDPASNALGWQWSAGSGPDATPYFRVFNPIT 404 Query: 414 QGKRFDPQGTFIRHWLPELNNVPTQ----YIHA-PHSWLDKNDLSLNYPLPIVDHKKACH 468 Q ++FDP ++ W+ E + P + Y A P SW D + YP PIV + Sbjct: 405 QREKFDPDKVYVDRWIAEGQSNPPKTALSYFDAIPESWAMTPDDA--YPEPIVSAEDGRK 462 Query: 469 HTLNQY 474 L+ Y Sbjct: 463 AALDAY 468 >gi|194365340|ref|YP_002027950.1| Deoxyribodipyrimidine photo-lyase [Stenotrophomonas maltophilia R551-3] gi|194348144|gb|ACF51267.1| Deoxyribodipyrimidine photo-lyase [Stenotrophomonas maltophilia R551-3] Length = 471 Score = 229 bits (585), Expect = 5e-58, Method: Compositional matrix adjust. Identities = 150/446 (33%), Positives = 224/446 (50%), Gaps = 23/446 (5%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 MSV LVW R DLR+ DN AL AA ++ V+ V+I P + + A + + SL Sbjct: 1 MSVALVWFRRDLRLQDNPALQAAL-DAGHDVVPVYIHAPHEEGEWVPGAASDAWRHRSLA 59 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 + L +G DS+ L + Q +F+NR+YE RD +++ Sbjct: 60 ALDAYLRSRGSSLVLRSG----DSLATLQALIKQTGAEAVFWNRKYEPATQPRDATIKRT 115 Query: 127 LQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQN----LVQADLRSLPVPA 181 L+ + I +S + S+L P I Q YKV+TP+ + ++ + +QA ++L + Sbjct: 116 LREQGIDAQSCNGSLLFEPWDIATQQGQPYKVFTPYWRNVLSHWRLPALQAAPKALTAHS 175 Query: 182 IRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQG 241 + G + + D+ + P GE AL L F + Y EQRD+P G Sbjct: 176 VDSLG-LEELRLAPTLDWDIGFWEHWQP-GEAGALEALSVFEDGALRGYREQRDLPDRVG 233 Query: 242 TSQLSPYLSIGVLSP---RQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFY 298 TS++SP+L G ++P L+ D I +L +L WR+F HL+ + Sbjct: 234 TSRMSPHLHFGEIAPWRIAHALEGLRSAGTDADID------GYLRQLGWRDFAYHLLHHF 287 Query: 299 PSVCMGKPFIPWTEKIEWNKDSHL-LQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMIT 357 P + P ++ W S L W++G TG PI+DA +R+L G+MHNR+RMI Sbjct: 288 PKTPT-ENLNPRFDRFPWATPSAAQLHDWQRGNTGVPIVDAGLRELWHTGYMHNRVRMIV 346 Query: 358 ASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKR 417 AS+L K L W G +F L+D DLA+N GWQW A TG D+ PYFR+FNP Q ++ Sbjct: 347 ASYLCKHLRAHWLHGARWFWDTLVDADLANNTMGWQWVAGTGADAAPYFRVFNPVTQAEK 406 Query: 418 FDPQGTFIRHWLPELNNVPTQYIHAP 443 FDPQ +I W+PEL +P + AP Sbjct: 407 FDPQARYISRWVPELAALPVKARFAP 432 >gi|88808070|ref|ZP_01123581.1| Deoxyribodipyrimidine photolyase [Synechococcus sp. WH 7805] gi|88788109|gb|EAR19265.1| Deoxyribodipyrimidine photolyase [Synechococcus sp. WH 7805] Length = 492 Score = 229 bits (585), Expect = 6e-58, Method: Compositional matrix adjust. Identities = 171/496 (34%), Positives = 236/496 (47%), Gaps = 57/496 (11%) Query: 6 AMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPE----QWRQHGISARQSHFI 61 A + L W R DLR+ DN L AA A V V++ P + ++ + F+ Sbjct: 2 ASARTLFWHRRDLRLADNTGLQAAVALGPA-VTGVYVLDPSIITPPPQLPPMAPARLWFL 60 Query: 62 YASLLQVQKSLSQKG---IVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVR 118 SL+++Q+ + G +V Q + LDS + + ++R E Sbjct: 61 VESLIELQERWREAGSRLLVLQGDPLTLLPQLAALLDS-------STVVWSRDVEPYARE 113 Query: 119 RDKLLEKRLQHRVICKSFD-DSVLLPPGSILNHALQMYKVYTPFRK---ALIQNL----- 169 RD+ + K LQ D D +L+ P + Y+VY PF + ++ L Sbjct: 114 RDRGVAKALQADGRQVLVDWDQLLVAPELLKTGNGDPYRVYGPFLRNWRGQVERLRPSTV 173 Query: 170 -VQADLRSLPVP---AIRLTGPVTPSNIPRFF------------DYPFQAID--PMFPIG 211 DL+ L AIR T + + R + ++ F +D P P G Sbjct: 174 AAPTDLQDLTAEQQQAIR----STETALGRLWADGQQALQRLQTEHGFAGMDLCPCRP-G 228 Query: 212 EQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLL 271 E A+ L F + Y R+ P GTS LS LS+G LSPRQ W + DL Sbjct: 229 EVAAVDQLAVFADGPLLGYEPDRNFPGTAGTSGLSAALSVGTLSPRQAWC-AAQAAKDLA 287 Query: 272 --IKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQG 329 + + W EL WREFY+ + +P + G P+ + W + WK G Sbjct: 288 RSDEQRQAIAVWEQELAWREFYQQALFHFPELADG-PYREQWRRFPWENNEDWFDFWKDG 346 Query: 330 YTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNN 389 TG PIIDAAMRQL GWMHNR RMI ASFLVKDL+ DWR GE FM +DGDLA+NN Sbjct: 347 QTGMPIIDAAMRQLQQSGWMHNRCRMIVASFLVKDLICDWRWGERAFMELEVDGDLAANN 406 Query: 390 GGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQ-YIHAPHSWLD 448 GGWQW+AS+G D P RIFNP Q +FD G +IR W+PEL +V T+ + L+ Sbjct: 407 GGWQWSASSGMDPKP-LRIFNPATQASKFDADGDYIRRWVPELRHVSTKDLLSGEIGALE 465 Query: 449 KNDLSLNYPLPIVDHK 464 + YP P+V+HK Sbjct: 466 RR----GYPEPLVNHK 477 >gi|269794388|ref|YP_003313843.1| deoxyribodipyrimidine photo-lyase type I [Sanguibacter keddieii DSM 10542] gi|269096573|gb|ACZ21009.1| deoxyribodipyrimidine photo-lyase type I [Sanguibacter keddieii DSM 10542] Length = 450 Score = 229 bits (584), Expect = 8e-58, Method: Compositional matrix adjust. Identities = 153/471 (32%), Positives = 230/471 (48%), Gaps = 41/471 (8%) Query: 13 WLRNDLRITDNKALYAACHNSDA---KVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69 W R DLR+ DN AL +A + A +V+ +F+ W G R ++ ASL + Sbjct: 6 WFRRDLRLADNPALNSAWEQAQADGSQVVGLFVLDDRLWGPSGSPRRD--YLLASLRALD 63 Query: 70 KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL-Q 128 +S+ + +V + E L + + + +E RD+ +E L + Sbjct: 64 ESMGGRLVVRRGAPT-------EVLPAVAREVGARTVHVAESFEPFGRARDEEVETALAE 116 Query: 129 HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188 V + + + PG +L Y+V+TPFR A + + PA + G V Sbjct: 117 DDVELRRTGSAYAVSPGRVLTRTGTPYRVFTPFRTAWLDH-------GWCGPA-QDPGEV 168 Query: 189 TPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPY 248 + +P D P +P+ P GE+ AL +F E V Y + R+ P + TS+LS Sbjct: 169 DWAELPSE-DLPEADGEPLRPAGEEAALERWHEFL-EDVAGYDDDRNRPDLDLTSRLSVP 226 Query: 249 LSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYP-----SVCM 303 L G + PR DL GA S+ +EL WREF+ ++ P S+ Sbjct: 227 LKWGEIHPRTL-------LADLKNLRDEGAASFRSELAWREFHADVLFHSPEAATLSIRE 279 Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363 P WT + + ++ +AW +G TG+P++DA MRQL GWMH R+RM+ SFLVK Sbjct: 280 VMPDDAWTPRSQADR---WFEAWTEGRTGYPMVDAGMRQLLAEGWMHGRVRMLVGSFLVK 336 Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423 DL + W+ G +FM LLD D + N WQW A TG D+ PYFRIFNP QG +FDP G Sbjct: 337 DLHIPWQRGARHFMQHLLDADRSQNQLNWQWVAGTGLDASPYFRIFNPVTQGLKFDPDGE 396 Query: 424 FIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQY 474 ++R W+PEL +P + +H P + +YP +VDH + +L+ Y Sbjct: 397 YVRRWVPELRGIPGKAVHEPWKLPTPPE---DYPDQLVDHGRERKESLDAY 444 >gi|294665668|ref|ZP_06730944.1| photolyase [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] gi|292604563|gb|EFF47938.1| photolyase [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] Length = 484 Score = 229 bits (584), Expect = 9e-58, Method: Compositional matrix adjust. Identities = 166/488 (34%), Positives = 240/488 (49%), Gaps = 33/488 (6%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQ---WRQHGISARQSHFIYA 63 MS +VW R DLR+ DN AL AA ++ I ++I P + W S H A Sbjct: 13 MSYAIVWFRRDLRLEDNPALRAAL-DAGHHPIPLYIDAPHEEGEWTPGAASRTWRHRSLA 71 Query: 64 SLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLL 123 +L ++L G+V + +S + LD Q +++NR+YE RD + Sbjct: 72 ALDGALRALG-SGLVIR------VGNSAQVLDEVIAQTGAVAVYWNRKYEPATQPRDAQI 124 Query: 124 EKRLQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPF-RKALIQNLVQADL---RSLP 178 ++ L+ R I +S + ++L P + YKV+TPF R A Q + A + RSLP Sbjct: 125 KRDLRERGIEAQSCNCALLFEPWQLSTQQGGPYKVFTPFWRNAPTQLQLPAAMGAPRSLP 184 Query: 179 -VPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIP 237 +PA T + + + Q + GE A +L F + Y E RD P Sbjct: 185 PLPASLKTDALDTLQLVPGVQWD-QGFWEHWRPGEAGAHEMLEIFIDGALSGYRENRDRP 243 Query: 238 AIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAF--SWLNELIWREFYRHLM 295 GTSQLSP+L G ++P + + L+ ++GA ++ +L WR+F HL+ Sbjct: 244 DRVGTSQLSPHLHFGEIAPWRIASTLETHRT-----ARNGAEIDGYVRQLGWRDFAYHLL 298 Query: 296 AFYPSVCMGKPFIPWTEKIEWNK-DSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLR 354 +P + P +W D LQAW++G TG PI+DA MRQL GWMHNR+R Sbjct: 299 HHFPDTT-NQNLNPRFAGFDWATVDPVALQAWQRGRTGIPIVDAGMRQLWHTGWMHNRVR 357 Query: 355 MITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQ 414 MI ASFL K L + W G +F L+D DLA+N GWQW A TG D+ PYFR+FNP Q Sbjct: 358 MIVASFLCKHLRIHWIEGARWFWDTLVDADLANNTLGWQWVAGTGADAAPYFRVFNPVTQ 417 Query: 415 GKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYP----LPIVDHKKACHHT 470 ++FDPQ +I W+PEL + + AP WL L+ P PI+ + Sbjct: 418 AEKFDPQAAYITRWVPELGKLAVKERFAP--WLHPLSLARVAPQYRRAPIIGLAEGRDAA 475 Query: 471 LNQYYAAK 478 L Y ++ Sbjct: 476 LAAYAKSR 483 >gi|254485504|ref|ZP_05098709.1| deoxyribodipyrimidine photolyase [Roseobacter sp. GAI101] gi|214042373|gb|EEB83011.1| deoxyribodipyrimidine photolyase [Roseobacter sp. GAI101] Length = 465 Score = 229 bits (583), Expect = 9e-58, Method: Compositional matrix adjust. Identities = 161/480 (33%), Positives = 228/480 (47%), Gaps = 37/480 (7%) Query: 12 VWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQKS 71 +W R DLR+TD+ AL AA VI VFI G+ A + + + Sbjct: 1 MWFRRDLRLTDHPALSAAAQTG-RPVIPVFIRDDAV---AGLGAAPKWRLGLGIGAFDDA 56 Query: 72 LSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR- 130 L +K + D++E L + ++++R Y+ RD +++ L+ Sbjct: 57 LREKSSRLILRKG----DALEVLQDLIKETGAGAVYWSRLYDPQATARDADIKEALKGAD 112 Query: 131 VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTP 190 V +SF ++ P ++ YKVYTPF A+ V A L S P LT P T Sbjct: 113 VEARSFGGHLMFEPWTVETKTGGNYKVYTPFWNAVKNTGVDAPL-SAPK---NLTAPDTW 168 Query: 191 SNIPRFFDYPFQA--------IDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGT 242 ++ + P +GE++A L F V Y RD+P + GT Sbjct: 169 PRSDDLAEWTMGGAMQRGADVVRPFVQLGEKSAQSRLGAFMAHGVADYKANRDLPGVDGT 228 Query: 243 SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVC 302 S LS L++G +SP QCW+ + D K GA ++L EL+WREF HLM P + Sbjct: 229 SNLSENLALGEISPHQCWHAGQRALHD----GKQGAETFLKELVWREFAYHLMHHSPRIL 284 Query: 303 MGKPFIPWTEKIEWNKDSHL--LQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASF 360 W + WN+D L ++AWK G TG P +DAAMR+L G MHNR RMI AS+ Sbjct: 285 TDNWREEW-QAFPWNEDERLAEVKAWKHGRTGEPFVDAAMRELYVTGRMHNRGRMIVASY 343 Query: 361 LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDP 420 L K L+ WRIG+++F L+D D ASN GWQWAA +G D+ PYFR+FNP Q +FD Sbjct: 344 LTKHLMCHWRIGQKWFEDCLIDWDPASNAMGWQWAAGSGPDATPYFRVFNPATQLDKFDK 403 Query: 421 QGTFIRHWLPELNNVP----TQYIHA-PHSW-LDKNDLSLNYPLPIVDHKKACHHTLNQY 474 + W+ E P ++ A P W L +D +YP IV + L Y Sbjct: 404 NRDYTSRWIAEGRANPHADALRFFDAIPKRWNLSASD---DYPDRIVALDEGRERALENY 460 >gi|110638357|ref|YP_678566.1| deoxyribodipyrimidine photolyase [Cytophaga hutchinsonii ATCC 33406] gi|110281038|gb|ABG59224.1| deoxyribodipyrimidine photolyase (photoreactivating enzyme) [Cytophaga hutchinsonii ATCC 33406] Length = 433 Score = 229 bits (583), Expect = 1e-57, Method: Compositional matrix adjust. Identities = 157/478 (32%), Positives = 227/478 (47%), Gaps = 77/478 (16%) Query: 8 SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPE--QWRQHGISARQSHFIYASL 65 V + W R DLR+TDN L+ A S V+ VFI +H AR FI+ ++ Sbjct: 3 EVVVFWFRRDLRLTDNAGLFQAL-TSGYAVLPVFIFDINILNALEHKNDAR-VEFIHDTI 60 Query: 66 LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125 ++ L + + + + E + + V ++ N YE ++RD + Sbjct: 61 QSLKNELQKIHSDMEVYHAT----PAEAFEQLVKKYTVKAIYTNTDYEPAAIKRDNEISD 116 Query: 126 -RLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQ------------- 171 Q ++ KSF D V+ IL Y+VYTP++ ++ L + Sbjct: 117 WAAQQQIAFKSFKDQVIFEKNEILTDTGAPYRVYTPYKNKWLKKLTENPVTHSPSEKHTD 176 Query: 172 ADLRSLPVPAIRLTG-PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYY 230 A LR P + L TPS+I I P L LRK +E Y Sbjct: 177 AFLRMEAKPIVTLKQLGFTPSSI---------QIPP---------LETLRKTIQE----Y 214 Query: 231 VEQRDIPAIQ-GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWRE 289 + RD P ++ GTS L + G +S R+ ++K +WL+ELIWRE Sbjct: 215 DKTRDYPYLEHGTSLLGIHFRFGTISIREK-----------VVKALPLNATWLSELIWRE 263 Query: 290 FYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWM 349 F+ L+ +P V + F ++EW + W G TG+P++DA MR+LNT G M Sbjct: 264 FFMQLLFHFPHVVT-ESFQSKFNRLEWRYSQADFEKWCTGKTGYPLVDAGMRELNTTGHM 322 Query: 350 HNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIF 409 HNR+RM+ ASFL K L +DWR GE YF +LLD DL++NNG WQWAA TG D+ PYFRIF Sbjct: 323 HNRVRMVVASFLTKHLFIDWRWGEAYFAQKLLDYDLSANNGNWQWAAGTGADAQPYFRIF 382 Query: 410 NPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKAC 467 NP Q ++FDP +I+ W+PE + +Y PI++HKKA Sbjct: 383 NPISQQEKFDPDFIYIKKWVPEFG-------------------TSSYIEPIIEHKKAT 421 >gi|149372178|ref|ZP_01891448.1| deoxyribodipyrimidine photolyase-class I [unidentified eubacterium SCB49] gi|149354945|gb|EDM43507.1| deoxyribodipyrimidine photolyase-class I [unidentified eubacterium SCB49] Length = 435 Score = 229 bits (583), Expect = 1e-57, Method: Compositional matrix adjust. Identities = 148/472 (31%), Positives = 223/472 (47%), Gaps = 47/472 (9%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 V++ W R DLR+ DN + A H V+ +FI E + + FI+ +L ++ Sbjct: 5 VNVFWFRRDLRLDDNLGFFKALHGK-YPVLPIFIFDSEILNELPKDDARVTFIFNTLQKM 63 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL- 127 + +L +KG +Q D + + + +Q +T N YE+ RD+ ++ L Sbjct: 64 RDALQEKGSSLAMYQGKPLDIYKQLIKDFDVQNVIT----NHDYEVYAQDRDEEIKTFLA 119 Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187 Q + +F D V+ ++ Y VYTP++ + + + L Sbjct: 120 QKDIDFYTFKDQVIFEKNEVVKDNGDPYVVYTPYKNKWKAAFNEDKHLKIHYTSQHLDAL 179 Query: 188 VTPSNIPRFF--DYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245 + S +P D F P + + +E Y R+ PA+ GTS L Sbjct: 180 IEHSRLPNLSLSDIGFTKSSIEVP-----SYDVRPTLIQE----YENTRNFPAVDGTSHL 230 Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305 P+L G +S R+ + I K+ F +NELIWREF+ ++ +P Sbjct: 231 GPHLRFGTVSVRKMMRKA--------ISEKNETF--MNELIWREFFMQILWHFPK-TQHN 279 Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365 F ++I W + + WK+G TG+ ++DA MR+LN G+MHNR+RM+ ASFL K L Sbjct: 280 AFRSKYDRITWRNNEEEFEKWKKGETGYLLVDAGMRELNKTGYMHNRVRMLVASFLCKHL 339 Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425 L+DWR GE YF +LLD + +SN G WQWAA +G D+ PYFRIFNP Q +FD T+I Sbjct: 340 LIDWRWGEAYFAEKLLDYEQSSNVGNWQWAAGSGVDAAPYFRIFNPITQVDKFDKDKTYI 399 Query: 426 RHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477 R W+PE DK YP +VDHK+A L Y A Sbjct: 400 RKWIPEFET-------------DK------YPNKMVDHKEARERCLKVYKEA 432 >gi|150025093|ref|YP_001295919.1| deoxyribodipyrimidine photolyase PhrB1 [Flavobacterium psychrophilum JIP02/86] gi|149771634|emb|CAL43108.1| Deoxyribodipyrimidine photolyase PhrB1 [Flavobacterium psychrophilum JIP02/86] Length = 428 Score = 229 bits (583), Expect = 1e-57, Method: Compositional matrix adjust. Identities = 157/474 (33%), Positives = 228/474 (48%), Gaps = 53/474 (11%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 +++ W R DLR+ DN L+ A NSD ++ +FI Q + FI+ L ++ Sbjct: 1 MNIFWFRRDLRLDDNVGLFHAL-NSDQTILPIFIFDYNILSQLSKDDARVTFIHELLSKM 59 Query: 69 QKSLSQKG--IVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 QK L +KG + Y + S E + + +V ++ N YE +RDK L + Sbjct: 60 QKKLQEKGKSLAVFYGKPS------EIFEKLISENKVKTIYTNHDYEPYARKRDKELNQL 113 Query: 127 L-QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185 H + + D V+ + + Y VYTP+ + Q L++ L Sbjct: 114 FANHNIQFLTSKDQVIFEKSEVTKDDGKPYIVYTPYTNKWKEKFKQTTLKNYNSENY-LD 172 Query: 186 GPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKF--CKEKVYYYVEQRDIPAIQGTS 243 VT YPF +++ IG + + + + + + Y R+ P++ TS Sbjct: 173 KIVTHP-------YPFLSLES---IGFETSKITVASYDISENLIDNYEATRNFPSLNKTS 222 Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCM 303 L YL G +S R+ + IK K+ F ELIWREF+ ++ +P + Sbjct: 223 FLGIYLRFGAVSVRKM--------MQEAIKSKNETF--FKELIWREFFMQILWHFPH-TI 271 Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363 K F + I W L Q W QG TG+P +DA MR+LN G MHNR+RMI ASFL K Sbjct: 272 NKSFKEKYDAIIWENKEDLFQKWCQGKTGYPFVDAGMRELNATGHMHNRVRMIVASFLCK 331 Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423 LL+DWR GE YF ++LLD + +SN G WQWAA +G D+ PYFRIFNPT Q K+FD Sbjct: 332 HLLIDWRWGETYFATKLLDYEQSSNVGNWQWAAGSGVDAAPYFRIFNPTEQIKKFDKDLK 391 Query: 424 FIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477 +I+ W+PEL + +YP PIV+HK A L Y A Sbjct: 392 YIKKWIPELQ-------------------TSHYPEPIVEHKFARERCLKVYKEA 426 >gi|91977566|ref|YP_570225.1| deoxyribodipyrimidine photolyase [Rhodopseudomonas palustris BisB5] gi|91684022|gb|ABE40324.1| Deoxyribodipyrimidine photo-lyase type I [Rhodopseudomonas palustris BisB5] Length = 487 Score = 228 bits (582), Expect = 1e-57, Method: Compositional matrix adjust. Identities = 159/491 (32%), Positives = 238/491 (48%), Gaps = 34/491 (6%) Query: 11 LVWLRNDLRITDNKALY-AACHNSDAKVIAVFIATPEQWRQ---HGISARQSHFIYASLL 66 +VW R+DLR++D+ AL+ AA I VF Q R + ++ SL Sbjct: 10 IVWFRDDLRLSDHPALHQAAASGGPLICIYVFDEDSAQLRSPQARPLGGASRWWLAQSLR 69 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRR--DKLLE 124 + SL ++G + + + Q + + +N + EI R D L E Sbjct: 70 ALAASLEKRGARLILRRGP----AAAIIAELARQVDASAVHWN-EIEIAPHRAVADDLAE 124 Query: 125 KRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL 184 + +L P + + +V+TPF + ++ + + LP P L Sbjct: 125 ALSVAGIDHHRHRGDLLASPAEVRTKEGRGLRVFTPFWRRVLG--LGDPPKLLPAPKT-L 181 Query: 185 TGPVTPSNI--------PRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDI 236 + PS P D+ + P GE A L F + + Y E RD Sbjct: 182 SAAQGPSGDQLDSWMLEPTEPDWAGGLRESWTP-GEGAAQDNLTAFL-DALPGYTEGRDR 239 Query: 237 PAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFS-WLNELIWREFYRHLM 295 P TS+LSP+L G +SPRQ W + F +G +L+EL WREF RHL+ Sbjct: 240 PDCAATSRLSPHLRFGEISPRQVWYAAR--FAAAERPAIAGDIDKFLSELGWREFCRHLL 297 Query: 296 AFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRM 355 +P + + + W D+ L AW++G TG+PI+DA MR+L G MHNR+RM Sbjct: 298 HDHPDLAE-RNLQASFDAFPWITDAAALHAWQRGCTGYPIVDAGMRELWHTGVMHNRVRM 356 Query: 356 ITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQG 415 + ASFLVK LL+DWR GE++F L+D D SN WQW A +G D+ PYFR+FNP +QG Sbjct: 357 VVASFLVKHLLIDWRCGEQWFWDTLVDADAGSNPANWQWVAGSGADAAPYFRVFNPILQG 416 Query: 416 KRFDPQGTFIRHWLPELNNVPTQYIHAPHSW----LDKNDLSL--NYPLPIVDHKKACHH 469 ++FDP G ++R W+PEL ++P ++IH P + L ++L NYP PI+DH+ Sbjct: 417 EKFDPAGDYVRRWVPELASLPAKFIHQPWTATPFELAAAGVTLGGNYPEPIIDHRVGRER 476 Query: 470 TLNQYYAAKKQ 480 L Y ++ Sbjct: 477 ALAAYAKTRQH 487 >gi|300774220|ref|ZP_07084087.1| possible deoxyribodipyrimidine photo-lyase [Sphingobacterium spiritivorum ATCC 33861] gi|300758899|gb|EFK55728.1| possible deoxyribodipyrimidine photo-lyase [Sphingobacterium spiritivorum ATCC 33861] Length = 437 Score = 228 bits (582), Expect = 1e-57, Method: Compositional matrix adjust. Identities = 162/482 (33%), Positives = 241/482 (50%), Gaps = 51/482 (10%) Query: 5 TAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFI--ATPEQWRQHGISARQSHFIY 62 +A+ + W R DLR+ DN AL+ A NS+A V VFI +T AR + FIY Sbjct: 2 SAVPTVIFWFRRDLRLQDNHALFRAL-NSEAAVQPVFIFDSTILTRLDDPADARVT-FIY 59 Query: 63 ASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKL 122 L +Q+ L G + + + + W + Y + T ++ N YE + RD L Sbjct: 60 QQLQLLQEQLKPYGSSIRTYYG---EPATVWEEIYE-EYTPTAVYVNSDYEPAAITRDLL 115 Query: 123 LEKRLQ-HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPA 181 + LQ ++V +F D V+ I+ + Y VYTP++ + L + LP+P+ Sbjct: 116 VRGILQQYKVDFNTFKDQVIFEKAEIVKNDGLPYTVYTPYKNKWLTTLEE----QLPLPS 171 Query: 182 IRLTGPVTPSNIPRFFDYPFQAIDPMFPIG-EQNALHILRKFCKEKVYYYVEQRDIPAIQ 240 T N+ + A+ + +G + + K + Y + RDIP ++ Sbjct: 172 ------YTSENLLKNLRQASYALPSLQDLGFSLSTIPFPEKTFFTAIADYADTRDIPGLE 225 Query: 241 -GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYP 299 GTS L +L G +S R+ R S ++L+ELIWREF+ + +P Sbjct: 226 NGTSHLGIHLRFGTISIRKLVERAY----------PSQNKTYLHELIWREFFMMCLWHFP 275 Query: 300 SVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITAS 359 + + + I W + +AW G TG+P++DA MR+LNT G+MHNR+RM+TAS Sbjct: 276 HT-VNHAYYSKYDHIRWENNVAHFEAWCNGQTGYPLVDAGMRELNTTGFMHNRVRMLTAS 334 Query: 360 FLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFD 419 FL K LL+DWR GE YF +LLD D ++N G WQWAA G D+ PYFRIFNPT+Q K+FD Sbjct: 335 FLCKHLLIDWRWGEAYFAQKLLDYDQSANIGNWQWAAGCGMDAAPYFRIFNPTLQTKKFD 394 Query: 420 PQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479 PQ +I+ W+PE + +YP PIV+H A L +Y A + Sbjct: 395 PQFVYIKKWVPEFQD-------------------FSYPPPIVEHAWARDRALARYKAGFE 435 Query: 480 QS 481 S Sbjct: 436 HS 437 >gi|262201249|ref|YP_003272457.1| deoxyribodipyrimidine photo-lyase [Gordonia bronchialis DSM 43247] gi|262084596|gb|ACY20564.1| Deoxyribodipyrimidine photo-lyase [Gordonia bronchialis DSM 43247] Length = 434 Score = 228 bits (582), Expect = 1e-57, Method: Compositional matrix adjust. Identities = 156/484 (32%), Positives = 224/484 (46%), Gaps = 65/484 (13%) Query: 6 AMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASL 65 A ++WLR DLR+ D L AA N +V+ F+ P + G R+ F++ SL Sbjct: 2 ADPASILWLRRDLRLGDLPPLSAAAAN--GRVLVCFVVDPRLEKSSG--ERRLAFLFDSL 57 Query: 66 LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125 ++ L + +V +D+ + + R RRD + + Sbjct: 58 RELDTKLGGRLLVVSGRPDVEIPRLASAVDAGSVHVSEDFSPFGR-------RRDAAVAE 110 Query: 126 RLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQ-------NLVQADLRSLP 178 L + +S L+ PG I YKV+TP+ + + DL +L Sbjct: 111 ALGE-IPLESVGSPYLVSPGRITKSDGDPYKVFTPYFRQWCDHGWRKPASTAAEDLNALD 169 Query: 179 VPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPA 238 IR +G + P D P GE+ A +F + + Y R+ P Sbjct: 170 PGDIRRSGRIRIPAAPVKLD---------LPAGEEAARERWSEFVVDDLDDYESGRNRPD 220 Query: 239 IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFY 298 + +S++S YL G + PR DL + S A ++L EL +R+FY ++ + Sbjct: 221 LDVSSRMSAYLKFGNIHPRTM-------AADLDFRNPSAA-AYLRELAFRDFYADVLYHW 272 Query: 299 PSVCMGKPFIPWT---EKIEWNKDSHL---LQAWKQGYTGFPIIDAAMRQLNTIGWMHNR 352 P W + I+ + D AW+ G TGFPI+DA MRQL IG+MHNR Sbjct: 273 PESAWHN----WNRGFDDIDLDTDKQAYARFDAWRAGRTGFPIVDAGMRQLAAIGFMHNR 328 Query: 353 LRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPT 412 +RMITASFLVKDL + W G +F+ QL+DGD+ASN GWQWAA TG D+ PYFR+FNPT Sbjct: 329 VRMITASFLVKDLHLPWWWGARWFLDQLVDGDMASNQHGWQWAAGTGTDAAPYFRVFNPT 388 Query: 413 IQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLN 472 Q +FDP G +IR W+PE + +YP PIVDHK L Sbjct: 389 TQADKFDPDGEYIRRWIPEYG-------------------TDDYPQPIVDHKAEREEALR 429 Query: 473 QYYA 476 +Y A Sbjct: 430 RYRA 433 >gi|254797170|ref|YP_003082010.1| deoxyribodipyrimidine photolyase [Neorickettsia risticii str. Illinois] gi|254590408|gb|ACT69770.1| deoxyribodipyrimidine photolyase [Neorickettsia risticii str. Illinois] Length = 469 Score = 228 bits (581), Expect = 2e-57, Method: Compositional matrix adjust. Identities = 147/450 (32%), Positives = 229/450 (50%), Gaps = 40/450 (8%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQW--RQHGISARQSHFIYASLL 66 + +VW R D R DN AL+ A +I V+I R+ G +AR +I SL+ Sbjct: 6 IAVVWFRKDFRTDDNPALFEATKIRS--IIPVYIIDENNCSIRKPGKAARI--WIAESLI 61 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 + KSL ++ ++I L + + + L++N Y+ + + D+ + Sbjct: 62 DLNKSLDHHLKIYS-------GNTITILKTLLSRYKAEALYWNTTYDPEQDKYDEQIRTE 114 Query: 127 L---QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIR 183 + +I ++F+ +L P + Y+++T F+ +++ ++ P IR Sbjct: 115 ILKDHPNIIIRNFNARLLWEPSELRKKNGDTYRLFTAFKNKVMEEKLEPRFPIPSPPKIR 174 Query: 184 LT--------GPVTPSNIPRFFDYPF-QAIDPMFPIGEQNALHILRKFCKEKVYYYVEQR 234 VTP I + D+ F Q I + I EQ+A +L++F +K+ Y R Sbjct: 175 YCKEINIPELASVTPEKIIKDKDHCFEQGIYKQWKISEQDAHVLLQEFVDKKLDNYHIDR 234 Query: 235 DIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHL 294 D P GTS LSPY++ G +SP + W F + P+S F L EL+WREF ++ Sbjct: 235 DYPGKNGTSTLSPYINFGQISPNRIW------FALVRFLPQSIQF--LTELLWREFAYNI 286 Query: 295 MAFYP---SVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHN 351 + P S + + F + W D + W +G TG+PI+DA +R+L + G+MHN Sbjct: 287 LNTNPELGSQNLQQKF----DYFPWENDKQKFKLWSRGETGYPIVDAGIRELLSTGYMHN 342 Query: 352 RLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNP 411 R+RMI SFL K+LL+ W+ GEE+F L+D D ASN WQW A +G DSVPYFRIF+P Sbjct: 343 RVRMIVGSFLTKNLLIHWKYGEEFFWEYLVDADPASNTFNWQWIAGSGADSVPYFRIFSP 402 Query: 412 TIQGKRFDPQGTFIRHWLPELNNVPTQYIH 441 T Q K+FDPQ + WLPE + +H Sbjct: 403 TTQTKKFDPQLQYSDKWLPEYRSTCFTPVH 432 >gi|254465900|ref|ZP_05079311.1| deoxyribodipyrimidine photolyase [Rhodobacterales bacterium Y4I] gi|206686808|gb|EDZ47290.1| deoxyribodipyrimidine photolyase [Rhodobacterales bacterium Y4I] Length = 474 Score = 228 bits (580), Expect = 2e-57, Method: Compositional matrix adjust. Identities = 159/492 (32%), Positives = 238/492 (48%), Gaps = 52/492 (10%) Query: 13 WLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQKSL 72 W+R DLR+ DN AL AA S A V+ V+I + + A + L + L Sbjct: 10 WIRRDLRLCDNPALTAAA-ESGAPVLPVYILDEQD---EALGAAPKFRLGLGLDHFGQEL 65 Query: 73 SQKG---IVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH 129 ++ G I+ + D IE + + ++R Y+ +RRD +++ L+ Sbjct: 66 AKAGSCLILRRGKALRVLQDLIE-------ETGAGAVHWSRLYDPQAIRRDSEIKQTLKE 118 Query: 130 R-VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188 + V KS +L P ++ A MYKVYTPF KA+ V + LP P ++ P Sbjct: 119 QGVAVKSHGGRLLFEPWTVETKAGGMYKVYTPFWKAVRSRDVDS---LLPAPG-KIAAPD 174 Query: 189 TPSNIPRFFDYPFQA--------IDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ 240 D+ A + +GE AL L F ++ V Y +RD PA Sbjct: 175 NWPASEDLADWRMAAAMRRGADVVARYCRVGETAALERLETFLEDSVDAYKARRDYPAED 234 Query: 241 GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPS 300 TS LS L+ G +SP + W++ + + GA +L E++WREF HLM P Sbjct: 235 ATSGLSENLAWGEISPHRMWHQGSA----AMERGSQGAEHFLKEIVWREFAYHLMYNSPH 290 Query: 301 VCMGK-----PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRM 355 + PW++KI + +QAW++G TG+ +DAAMR+L G MHNR RM Sbjct: 291 ILTESWREEWQEFPWSQKI-----TPQVQAWQRGLTGYGFVDAAMRELYVTGKMHNRARM 345 Query: 356 ITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQG 415 I ASFL K L+ W+IG ++F L+D D ASN GWQW A +G D+ P+FR+FNP+ Q Sbjct: 346 IVASFLTKHLMTHWKIGMDWFADTLVDWDPASNALGWQWVAGSGPDAAPFFRVFNPSGQL 405 Query: 416 KRFDPQGTFIRHWLPELNNVPTQ-----YIHAPHSWLDKNDLSLNY--PLPIVDHKKACH 468 ++FDP+G + W+ E + P + + AP SW DLS P+V + Sbjct: 406 EKFDPEGAYTSRWIAEGQDTPPRTALDFFDAAPLSW----DLSAGMAPAEPVVSLQAGRD 461 Query: 469 HTLNQYYAAKKQ 480 L Y+ A+ + Sbjct: 462 RALTAYHEARGE 473 >gi|329764714|ref|ZP_08256309.1| Deoxyribodipyrimidine photolyase [Candidatus Nitrosoarchaeum limnia SFB1] gi|329138764|gb|EGG43005.1| Deoxyribodipyrimidine photolyase [Candidatus Nitrosoarchaeum limnia SFB1] Length = 451 Score = 227 bits (579), Expect = 3e-57, Method: Compositional matrix adjust. Identities = 151/466 (32%), Positives = 241/466 (51%), Gaps = 36/466 (7%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 L R DLR+ DN L A S+ +VI FI + S + F+ SL + + Sbjct: 8 LFIFRRDLRLEDNTGLIYALKTSN-EVIPCFILDTDILDNLKKSRLRIKFLNESLKDLNE 66 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQY-EINEVRRDKLLEKRLQH 129 L ++ + + S E ++ L+ ++ +F N Y + +++ +K+ + Q Sbjct: 67 QLIKRKTNLRIFRGR----SEEIIEKIILENKIDGVFLNGDYTKFAQLKENKIKKICNQK 122 Query: 130 RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKAL----IQNLVQADLRSLPVPAIRLT 185 + F D +L P I + Y VY+ F K +++ ++ + R+ + I+ Sbjct: 123 NIGFNKFADYLLHVPDEIHTKEQKPYTVYSYFYKTAKTIPVRSKIKNNFRNYSLDKIKND 182 Query: 186 GPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245 + + + + M G +NAL IL+ + K Y + RD P + T++L Sbjct: 183 NSL---------EITIENKEKM-EGGRRNALKILKNISEYK--NYQKTRDYPGLDKTTKL 230 Query: 246 SPYLSIGVLSPRQCWNRLKEEF-VDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304 S ++ G +S R+ + +KE +D + +N+L WREF+ +++ +P+ Sbjct: 231 SAHIRFGTISVREAYQAIKENLGID---------HTLINQLYWREFFTYVLHHFPN-SKS 280 Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364 + F KI W+ + W +G TGFPI+DA MRQLN G+MHNR+RMI ASFL KD Sbjct: 281 RTFKKKFRKIPWSTNKQEYHTWCKGETGFPIVDAGMRQLNKTGFMHNRVRMIVASFLTKD 340 Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424 + +DW++GE YF +L+D D A N G WQWAASTG D+VPYFRIFNP IQ ++FD + Sbjct: 341 MHIDWKLGERYFAEKLVDYDPAVNAGNWQWAASTGCDAVPYFRIFNPWIQQEKFDSNCNY 400 Query: 425 IRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHT 470 I+ W+PEL + +YIH + W K L YP PI++HK + T Sbjct: 401 IKKWIPELETLQPKYIH--NLW-KKYPEGLTYPKPILNHKIESNKT 443 >gi|90424846|ref|YP_533216.1| deoxyribodipyrimidine photolyase [Rhodopseudomonas palustris BisB18] gi|90106860|gb|ABD88897.1| Deoxyribodipyrimidine photo-lyase type I [Rhodopseudomonas palustris BisB18] Length = 483 Score = 227 bits (579), Expect = 3e-57, Method: Compositional matrix adjust. Identities = 148/481 (30%), Positives = 230/481 (47%), Gaps = 36/481 (7%) Query: 3 ATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIY 62 A + LVW R+DLR++D+ AL A S A V+ +++ E + ++ Sbjct: 2 ANAPAPISLVWFRDDLRLSDHPALDDA-GRSGAAVVCLYVLDEESAGLRPLGGAARWWLA 60 Query: 63 ASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNR-QYEINEVRRDK 121 SL + L+ +G V + + + + ++ +N D Sbjct: 61 QSLRSLSADLAARGGVLILRRGP----AARIVAEVAREAGAVRVSWNDVPNRPARAVADD 116 Query: 122 LLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPA 181 L + V + +L P ++ + +V+TPF K ++ +L P Sbjct: 117 LAARLGDLGVAAQCCPGDLLAAPATVRTQQGRGLRVFTPFWKRVL---------ALGDPP 167 Query: 182 IRLTGPVTPSNIPRFF-----DYPFQAIDP--------MFPIGEQNALHILRKFCKEKVY 228 LT P ++P D+ + P + GE A L+ F + Sbjct: 168 QPLTAPKALCSVPSLASDTLDDWKLEPTRPDWAGGLRARWQPGEAAAQRGLQHFLHGAIA 227 Query: 229 YYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWR 288 Y +RD P TS LSP+L G +SPRQ W+ + + + +L+EL WR Sbjct: 228 GYATERDRPDRVATSTLSPHLRFGEISPRQVWHAARFAAAERPAI-AADVDKFLSELGWR 286 Query: 289 EFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGW 348 EF RHL+ P + + P ++ W D L+AW++G TG+P++DA MR+L G Sbjct: 287 EFCRHLLFDNPDLAT-RNLQPAFDRFPWTTDPIALRAWQRGRTGYPLVDAGMRELRLTGV 345 Query: 349 MHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRI 408 MHNR+RM+ ASFLVK LL+DWR GE +F L+D D ASN WQW A G D+ PYFR+ Sbjct: 346 MHNRVRMVAASFLVKHLLLDWRCGEAWFWDTLVDADPASNPANWQWVAGCGADAAPYFRV 405 Query: 409 FNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSW----LDKNDLSLN--YPLPIVD 462 FNP +QG+RFD +G ++R ++PE+ + + IH P + L+ ++L YP PIVD Sbjct: 406 FNPILQGERFDAEGDYVRRFIPEIAGLSNKSIHQPWTATPLELEAAGVTLGDTYPNPIVD 465 Query: 463 H 463 H Sbjct: 466 H 466 >gi|118617507|ref|YP_905839.1| DNA photolyase, PhrI [Mycobacterium ulcerans Agy99] gi|118569617|gb|ABL04368.1| DNA photolyase, PhrI [Mycobacterium ulcerans Agy99] Length = 447 Score = 227 bits (579), Expect = 3e-57, Method: Compositional matrix adjust. Identities = 159/477 (33%), Positives = 235/477 (49%), Gaps = 41/477 (8%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M+ L+W R DLR+ D+ AL AA + + V+A F+ P G+ R+ F+ SL Sbjct: 1 MTRALLWFRRDLRLGDHPALAAAADSEE--VLACFVVDPRLEASSGL--RRLQFLGDSLR 56 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLF--YNRQYEINEVRRDKLLE 124 Q+ +L + +V + + +++ + VT F + R RRD+ + Sbjct: 57 QLNDALQGRLLVTRGRPEQRIPLIAKAIEASSVH--VTGDFAPFGR-------RRDERVA 107 Query: 125 KRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL 184 L RV + L+ PG ++ + Y+V+TPF + +A + P A L Sbjct: 108 AGLG-RVPLVATGSPYLVSPGRVVKNDGSPYQVFTPFFRKWQDARWRAPADTGPGSACWL 166 Query: 185 TGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244 T D P +D GE A+ F K+ Y RD P +GTS+ Sbjct: 167 DPAQTDIEQCEIPD-PGTELD--LAAGEAAAIREWTAFRTAKLDRYEHDRDRPDFEGTSR 223 Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304 +S YL G + PR V + +GA S+L EL +R+FY ++ +P+ Sbjct: 224 MSAYLKFGTIHPRT--------MVAGMDLTGTGARSYLRELAFRDFYGAVLHHWPASAWH 275 Query: 305 KPFIPWT---EKIEWNKDSH---LLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITA 358 W + I + D++ + + WK G TG+P++DA MRQL G+MHNR+RMI A Sbjct: 276 N----WNSNFDGIVTDTDANARRVFECWKAGETGYPLVDAGMRQLRETGFMHNRVRMIAA 331 Query: 359 SFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRF 418 SFLVKDL + W+ G +F+ QL DGDLASN GWQW+A G D+ PYFRIFNP+ Q ++F Sbjct: 332 SFLVKDLHLPWQWGAAWFLDQLTDGDLASNQHGWQWSAGCGTDAAPYFRIFNPSAQAEKF 391 Query: 419 DPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYY 475 DP G +IR W+PEL +V +H YP PIVDH L +Y+ Sbjct: 392 DPAGDYIRRWVPELRDV--DNVHRIQR--RGGPCPSTYPAPIVDHGTERAEALRRYH 444 >gi|298675064|ref|YP_003726814.1| deoxyribodipyrimidine photo-lyase [Methanohalobium evestigatum Z-7303] gi|298288052|gb|ADI74018.1| Deoxyribodipyrimidine photo-lyase [Methanohalobium evestigatum Z-7303] Length = 459 Score = 227 bits (579), Expect = 3e-57, Method: Compositional matrix adjust. Identities = 157/473 (33%), Positives = 238/473 (50%), Gaps = 30/473 (6%) Query: 14 LRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQH-GISARQSHFIYASLLQVQKSL 72 R DLR+ DN L A NS+ VI FI P ++ + F+ SL ++ L Sbjct: 11 FRRDLRVDDNTGLDYALENSEY-VIPCFIFDPRLIEKNDNFNPNSFQFLIESLEDLKHQL 69 Query: 73 SQKGI-VFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ-HR 130 + KG ++ +H + + + + + +F NR Y +RD+ +K + + Sbjct: 70 NDKGAKLYLFHGIAE-----NVVTNLINKNLIDAVFVNRDYTPFSKKRDEAFKKACEMYN 124 Query: 131 VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTP 190 V S +D +L P I Y V+TPF K + +L + TG + Sbjct: 125 VDFISCNDLLLNNPDKIKTQKGTPYTVFTPFFKKASK--FDVNLPEMSSKQNFYTGKI-- 180 Query: 191 SNIPRFFDYPFQAI--DPMF-PIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSP 247 N D+ +A P++ G NAL IL ++ Y +RD P + T+ LS Sbjct: 181 ENELNDTDHFLKAKRNKPLYVKGGRSNALKILENL--DEFKNYENERDYPFLDATTGLSA 238 Query: 248 YLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPF 307 + G +S R EF +I + + +L WR+FY +L YP + + F Sbjct: 239 HNKFGTISIR--------EFYYTVIDKLGISHPLITQLYWRDFYTYLAHHYPYI-FKQSF 289 Query: 308 IPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLV 367 + IEW+ DS + W G TGFPI+DA +R++N G+MHNR+RMITASFLVKDL + Sbjct: 290 KKKFDSIEWDNDSDKFKKWCAGETGFPIVDAGIREMNYTGYMHNRVRMITASFLVKDLHI 349 Query: 368 DWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRH 427 DW+ GE+YF +L+D D + N G WQW+ASTG D+ P+FRIFNP Q K+FD + +I+ Sbjct: 350 DWKWGEQYFARKLVDYDKSVNIGNWQWSASTGPDAQPFFRIFNPWSQQKKFDSECIYIKK 409 Query: 428 WLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQ 480 W+ EL NV + I H+ +KN YP PI++HK +L + A ++ Sbjct: 410 WIEELRNVSCKSI---HNLENKNTFIPGYPEPIINHKTEREKSLAVFRLANQK 459 >gi|332293614|ref|YP_004432223.1| Deoxyribodipyrimidine photo-lyase [Krokinobacter diaphorus 4H-3-7-5] gi|332171700|gb|AEE20955.1| Deoxyribodipyrimidine photo-lyase [Krokinobacter diaphorus 4H-3-7-5] Length = 465 Score = 227 bits (579), Expect = 3e-57, Method: Compositional matrix adjust. Identities = 153/483 (31%), Positives = 227/483 (46%), Gaps = 54/483 (11%) Query: 3 ATTAMS--VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHF 60 ATT S V++ W R DLR+ DN A D V+ +FI E + + F Sbjct: 27 ATTMSSNKVNIFWFRRDLRLDDNVGFLEAL-KGDLPVLPIFIFDKEILDKLPKDDARVTF 85 Query: 61 IYASLLQVQKSLSQKGIVFQYHQCS---NFDDSIEWLDSYCLQQRVTKLFYNRQYEINEV 117 I+ +L +++ +L + H S +D + + +F NR YE Sbjct: 86 IFETLQKMRSTLQDE------HASSLAMYYDTPEKVFKQLSKDFEIATVFTNRDYEPYAK 139 Query: 118 RRDKLLEKRLQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRS 176 RD+++ L+ I K+F D V+ ++ Y VYTPF+ + + Sbjct: 140 ERDEVISSLLKDNDIEFKTFKDQVIFEKDEVVKGDGDPYVVYTPFKNKWKERFDTDKDLT 199 Query: 177 LPVPAIRLTGPVTPSNIPRFF--DYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQR 234 + + L + S +P D F+ P E + L + Y + R Sbjct: 200 IHYTSQHLNNLIEHSRLPNLSLSDMGFEKSSIEVP--EYDVTPTL-------IQNYEDTR 250 Query: 235 DIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHL 294 + PA GTS L P+L G +S R+ + E ++ W +ELIWREF+ + Sbjct: 251 NFPAQDGTSHLGPHLRFGTVSVRKMMKKAIAETNEIF---------W-SELIWREFFMQI 300 Query: 295 MAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLR 354 + +P K F ++IEW + + WK G TG+ ++DA MR+LNT G+MHNR+R Sbjct: 301 LFHFPH-TKDKAFRSKYDRIEWRNNEDEFEKWKNGETGYLLVDAGMRELNTTGYMHNRVR 359 Query: 355 MITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQ 414 M+ ASFL K LL+DWR GE YF +LLD +++SN G WQWAA +G D+ PYFRIFNP Q Sbjct: 360 MLVASFLCKHLLIDWRWGETYFAEKLLDYEMSSNVGNWQWAAGSGVDAAPYFRIFNPITQ 419 Query: 415 GKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQY 474 +FD Q +I W+PE + + NYP +VDHK+A L Y Sbjct: 420 VDKFDKQKEYISKWIPEHD-------------------TDNYPEKMVDHKEARERCLKTY 460 Query: 475 YAA 477 A Sbjct: 461 KEA 463 >gi|312900797|ref|ZP_07760094.1| FAD binding domain of DNA photolyase [Enterococcus faecalis TX0470] gi|311292278|gb|EFQ70834.1| FAD binding domain of DNA photolyase [Enterococcus faecalis TX0470] Length = 267 Score = 227 bits (578), Expect = 3e-57, Method: Compositional matrix adjust. Identities = 122/264 (46%), Positives = 156/264 (59%), Gaps = 19/264 (7%) Query: 225 EKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNE 284 +K+ Y +RD P TS LS +L G LS R W L L ++ E Sbjct: 3 QKLQSYENKRDFPYQDQTSHLSTFLRTGELSIRTIWQELASAPSSL------SKETFKKE 56 Query: 285 LIWREFYRHLMAFYP---SVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMR 341 L WR+FY + + +P + + F I+W D + W++G TG+PIIDAAMR Sbjct: 57 LAWRDFYNMIYSTFPQQKEEAIQEKF----RYIQWANDPEMFAKWQKGETGYPIIDAAMR 112 Query: 342 QLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGND 401 QLN GWMHNRLRMITASFLVK+L +DWR GE+YF L+D D A+N GGWQWAASTG D Sbjct: 113 QLNQTGWMHNRLRMITASFLVKNLHIDWRWGEKYFQKMLIDYDAANNIGGWQWAASTGTD 172 Query: 402 SVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND------LSLN 455 +VPYFRIFNP IQ K+FD G FI+ ++PEL VP +YIH P+ + L N Sbjct: 173 AVPYFRIFNPIIQSKKFDNDGQFIKKYVPELKQVPQKYIHQPNLMNEALQTRYHVHLGEN 232 Query: 456 YPLPIVDHKKACHHTLNQYYAAKK 479 YP PIVD+ + TL Y +K+ Sbjct: 233 YPKPIVDYASSKKQTLFLYEVSKE 256 >gi|163788107|ref|ZP_02182553.1| deoxyribodipyrimidine photolyase-class I [Flavobacteriales bacterium ALC-1] gi|159876427|gb|EDP70485.1| deoxyribodipyrimidine photolyase-class I [Flavobacteriales bacterium ALC-1] Length = 434 Score = 227 bits (578), Expect = 3e-57, Method: Compositional matrix adjust. Identities = 145/473 (30%), Positives = 221/473 (46%), Gaps = 47/473 (9%) Query: 8 SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67 +V++ W R DLR+ DN Y A + V+ +FI E + + FI+ +L Sbjct: 4 TVNIFWFRRDLRLDDNVGFYEAL-KGNHPVLPIFIFDSEILSKLPKDDARITFIHETLQN 62 Query: 68 VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127 ++++L ++ ++ E + ++ N YE RD ++ L Sbjct: 63 IRQTLQDN---YRSSIAMHYGKPKEVYTQLIKDYNINSVYTNHDYEPYAKERDTEVKSVL 119 Query: 128 -QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 +H + K++ D V+ I+ YKVYTP+ ++ + D + A Sbjct: 120 AEHNIEFKTYKDQVVFEKNEIVKKDGAPYKVYTPYMRSWKEKFKTLDFKIYKTKAY-FKN 178 Query: 187 PVTPSNIPRFF--DYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244 N+P D F+ + + P E ++ I Y R+ PA TS+ Sbjct: 179 IFQEINLPNLSLSDIGFETSNQLIPPYEVSSKLIQN---------YEATRNFPAQNSTSR 229 Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304 L P+L G +S R+ + E ++ L+ELIWREF+ ++ +P Sbjct: 230 LGPHLRFGTVSIRKMVKKAITETNEIF----------LHELIWREFFMQILWHFPHTAKD 279 Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364 F P ++IEW + +AW +G TG+P +DA MRQLN G+MHNR+RM+ SFL K Sbjct: 280 -AFKPKYDRIEWRNNEGEFKAWCEGKTGYPFVDAGMRQLNETGFMHNRVRMLVGSFLCKH 338 Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424 LL+DWR GE YF +L D D++SN G WQW A +G D+ PYFRIFNPT Q +FD + Sbjct: 339 LLIDWRWGEAYFAEKLHDYDMSSNIGNWQWVAGSGVDAAPYFRIFNPTSQILKFDKNLEY 398 Query: 425 IRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477 I+ W+P+ L YP PIVDHK+A L Y A Sbjct: 399 IKKWVPDFQ-------------------ELTYPQPIVDHKEARERCLKTYKYA 432 >gi|86134119|ref|ZP_01052701.1| deoxyribodipyrimidine photo-lyase, class I [Polaribacter sp. MED152] gi|85820982|gb|EAQ42129.1| deoxyribodipyrimidine photo-lyase, class I [Polaribacter sp. MED152] Length = 434 Score = 227 bits (578), Expect = 4e-57, Method: Compositional matrix adjust. Identities = 154/481 (32%), Positives = 226/481 (46%), Gaps = 63/481 (13%) Query: 8 SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67 +V + W R DLR+ DN Y A S+ KV+ +FI E + + FIY +L + Sbjct: 4 TVTVFWFRRDLRLDDNIGFYNAL-KSEHKVLPIFIFDKEILSKLPKDDARVTFIYDTLQE 62 Query: 68 V----QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLL 123 + Q + +F + S F + I+ + +F NR YE +RD+ + Sbjct: 63 MRGELQDNYGSSIAMFHGNPESVFSELIK-------NYTIDAVFTNRDYEPYATKRDESI 115 Query: 124 EKRL-QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAI 182 E+ L ++ + K+F D V+ ++ YKVYTP+ K + + DL+ + Sbjct: 116 EQLLSENDIEFKTFKDQVIFEKDEVVKKDGDPYKVYTPYMKLWKEQFKKEDLKIYYTNDV 175 Query: 183 RLTGPVTPSNIPRF------FDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDI 236 L + S +P F Q I P + KE Y + R+ Sbjct: 176 -LDNLIQNSRLPNLSLSDIGFTKSNQEITP---------YTVTPTLIKE----YEDTRNF 221 Query: 237 PAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMA 296 PA TS L P+L G +S R+ + E S W ELIWREF+ ++ Sbjct: 222 PAQDATSHLGPHLRFGTVSVRKMVKKAMAE---------SNEVFW-QELIWREFFMQILW 271 Query: 297 FYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMI 356 +P + F ++IEW + +AW +G TG+P++DA MRQLN G+MHNR+RM+ Sbjct: 272 HFPH-TKDEAFKSKYDRIEWRNNEREFKAWCKGETGYPLVDAGMRQLNETGFMHNRIRML 330 Query: 357 TASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGK 416 SFL K LL+DWR GE YF +L D ++ASN G WQW A +G D+ PYFRIFNPT Q K Sbjct: 331 VGSFLCKHLLIDWRWGEAYFAEKLHDYEMASNVGNWQWVAGSGVDASPYFRIFNPTTQIK 390 Query: 417 RFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYA 476 +FD +I+ W+ + +YP I+DHK A L Y A Sbjct: 391 KFDKDLKYIKKWVKDYEKS-------------------SYPKEIIDHKSARERCLTVYKA 431 Query: 477 A 477 A Sbjct: 432 A 432 >gi|294678477|ref|YP_003579092.1| deoxyribodipyrimidine photo-lyase [Rhodobacter capsulatus SB 1003] gi|294477297|gb|ADE86685.1| deoxyribodipyrimidine photo-lyase [Rhodobacter capsulatus SB 1003] Length = 483 Score = 227 bits (578), Expect = 4e-57, Method: Compositional matrix adjust. Identities = 155/483 (32%), Positives = 232/483 (48%), Gaps = 30/483 (6%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 L+WLR D R++D+ L AA S V+A+FI P +G + + L Q Sbjct: 8 LLWLRRDFRLSDHPMLSAAA-ASGRPVLALFILDPLA-EAYGAAPKWR------LEQALA 59 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130 + + ++ L + ++++R + + RD ++ L+ Sbjct: 60 AFAPALAACGVPLVLRRGPALAVLRQVLAESGAGAVWWSRDLDPAAIARDTEVKTALRAE 119 Query: 131 VI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189 + +SFD +L P ++ Y+VYTP+ +A+ V L PV A+R GPV Sbjct: 120 GLEARSFDGQLLFAPWAVQTGQGGPYRVYTPYWRAVRGLTVAPPL--APVTALR-PGPVL 176 Query: 190 PS------NIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS 243 + R + +GE A L +F +E + Y +RD A TS Sbjct: 177 RGESLDALGLGRAMRRGGAVVAKYARVGEAAAQARLERFLREGIETYQARRDFLAENATS 236 Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCM 303 +LS +L+ G +SPR W+ + + ++GA ++L EL+WREF HLM +YP + Sbjct: 237 ELSEHLAWGEISPRVIWH----AGAQAMAEGRAGAETFLKELVWREFAWHLMFYYPRLAT 292 Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363 + + P + W +S + W++G TG PI+DAAMR++ G MHNR RMI AS+L K Sbjct: 293 -ENWRPDWDSFPWAGESAAAERWRRGQTGEPIVDAAMREMYVTGRMHNRARMIVASYLTK 351 Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423 LL DWRIG +F L+D D A+N GWQW A G D+ PYFRIFNP Q ++FDP+G Sbjct: 352 HLLTDWRIGLAWFEDCLIDHDPAANAMGWQWVAGCGPDAAPYFRIFNPASQAEKFDPEGR 411 Query: 424 FIRHWLPELNNVPTQ-----YIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478 + R WL E N Q + P SW +L+ PL +D L Y A Sbjct: 412 YRRAWLAEGNRHAPQTAQDFFAAVPRSWGLVPGAALSAPL--IDLAAGRDRALAAYAARP 469 Query: 479 KQS 481 K Sbjct: 470 KTG 472 >gi|227538334|ref|ZP_03968383.1| deoxyribodipyrimidine photolyase PhrB1 [Sphingobacterium spiritivorum ATCC 33300] gi|227241849|gb|EEI91864.1| deoxyribodipyrimidine photolyase PhrB1 [Sphingobacterium spiritivorum ATCC 33300] Length = 437 Score = 226 bits (577), Expect = 5e-57, Method: Compositional matrix adjust. Identities = 162/482 (33%), Positives = 244/482 (50%), Gaps = 51/482 (10%) Query: 5 TAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFI--ATPEQWRQHGISARQSHFIY 62 +A+ + W R DLR+ DN AL+ A +S+A V VFI +T AR + FIY Sbjct: 2 SAVPTSIFWFRRDLRLEDNHALFRAL-SSEAAVQPVFIFDSTILTRLDDPADARVT-FIY 59 Query: 63 ASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKL 122 L +Q+ L G + + D + W + Y + + ++ N YE + RD L Sbjct: 60 QQLQLLQEQLKPYGSSIKTYYG---DPATVWEEIYE-EYKPAAVYVNSDYEPAAITRDLL 115 Query: 123 LEKRLQ-HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPA 181 ++ LQ + V +F D V+ I+ + Y VYTP++ + L + LP+P+ Sbjct: 116 IQGILQQYEVDFLTFKDQVIFEKDEIVKNDGLPYTVYTPYKNKWLTTLEE----KLPLPS 171 Query: 182 IRLTGPVTPSNIPRFFDYPFQAI-DPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ 240 + N R DY ++ D F + + + K + Y + RDIP+++ Sbjct: 172 YNSENLL---NNLRQADYTLPSLQDLGFSL---STIPFPEKTFFTGIADYADTRDIPSLE 225 Query: 241 -GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYP 299 GTS L +L G +S R+ R S ++L+EL+WREF+ + +P Sbjct: 226 NGTSHLGVHLRFGTISIRKLVERAY----------PSQNKTYLHELVWREFFMMCLWHFP 275 Query: 300 SVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITAS 359 + + + + I W + +AW G TG+P++DA MR+LNT G+MHNR+RM+TAS Sbjct: 276 HT-VNQAYYSKYDHIRWENNLAHFEAWCNGQTGYPLVDAGMRELNTTGFMHNRVRMLTAS 334 Query: 360 FLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFD 419 FL K LL+DWR GE YF +LLD D ++N G WQWAA G D+ PYFRIFNPTIQ K+FD Sbjct: 335 FLCKHLLIDWRWGEAYFAQKLLDYDQSANIGNWQWAAGCGMDAAPYFRIFNPTIQTKKFD 394 Query: 420 PQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479 P+ +I+ W+PE + +YP PIV+H A L +Y A + Sbjct: 395 PKFVYIKKWVPEFQD-------------------FSYPSPIVEHAWARDRALARYKAGFE 435 Query: 480 QS 481 S Sbjct: 436 HS 437 >gi|86141641|ref|ZP_01060187.1| deoxyribodipyrimidine photolyase-class I [Leeuwenhoekiella blandensis MED217] gi|85832200|gb|EAQ50655.1| deoxyribodipyrimidine photolyase-class I [Leeuwenhoekiella blandensis MED217] Length = 434 Score = 226 bits (577), Expect = 5e-57, Method: Compositional matrix adjust. Identities = 155/478 (32%), Positives = 234/478 (48%), Gaps = 56/478 (11%) Query: 8 SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67 +V++ W R DLR+ DN A + V+ +FI E + + FI+ +L + Sbjct: 3 TVNIFWFRRDLRLDDNVGFLEAL-KGEHPVLPIFIFDKEILNELPEDDARVTFIFETLQK 61 Query: 68 VQKSLSQK--GIVFQYHQCSNFDDSI--EWLDSYCLQQRVTKLFYNRQYEINEVRRDKLL 123 ++ L +K + YH S ++I + L+ Y +V +F N YE + RDK + Sbjct: 62 MRDELQEKHGSSIALYHGKS---ETIWKQLLEDY----KVDTVFTNHDYEPYALERDKKI 114 Query: 124 EKRLQHRVIC-KSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLR-SLPVPA 181 +K L+ + + ++F D V+ ++ Y VYTP++ Q + AD + + Sbjct: 115 KKLLEDQEVSFETFKDQVIFEKDEVVKGDGDPYVVYTPYKNKW-QEVFDADKHLKIHYTS 173 Query: 182 IRLTGPVTPSNIPR--FFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAI 239 L + S +P D F+ P E I Y + R+ PA Sbjct: 174 QYLENLIEHSRLPNISLSDMGFKKSSIEIPDYEVTPTLIQN---------YEDTRNFPAQ 224 Query: 240 QGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYP 299 GTS L P+L G +S R+ V I K+ F W +ELIWREF+ ++ YP Sbjct: 225 DGTSHLGPHLRFGTVSVRKM--------VKKAIAEKNTVF-W-SELIWREFFMQILYHYP 274 Query: 300 SVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITAS 359 + F ++IEW + + WK+G TG+ ++DA MRQLN G+MHNR+RM+ AS Sbjct: 275 E-TVNNAFRSKYDRIEWRNNKEEFEKWKKGETGYLLVDAGMRQLNKTGYMHNRVRMLVAS 333 Query: 360 FLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFD 419 FL K LL+DWR GE YF +LLD + +SN G WQWAA +G D+ PYFRIFNP Q +FD Sbjct: 334 FLCKHLLIDWRWGEAYFAEKLLDYEQSSNVGNWQWAAGSGVDAAPYFRIFNPMTQVDKFD 393 Query: 420 PQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477 +I+ ++PE + + +YP +VDHK+A L Y AA Sbjct: 394 KDKKYIKEFVPEFD-------------------TDDYPEKMVDHKEARERCLETYKAA 432 >gi|315658957|ref|ZP_07911824.1| deoxyribodipyrimidine photolyase [Staphylococcus lugdunensis M23590] gi|315496081|gb|EFU84409.1| deoxyribodipyrimidine photolyase [Staphylococcus lugdunensis M23590] Length = 460 Score = 226 bits (577), Expect = 5e-57, Method: Compositional matrix adjust. Identities = 134/343 (39%), Positives = 189/343 (55%), Gaps = 20/343 (5%) Query: 144 PGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQA 203 P LN Q YKV+T F KA L Q R P +L + ++ + + Sbjct: 131 PSRTLNQQGQPYKVFTSFYKANRPQLRQR--RRYPYQLDKLKQQIINAD-----NTSVKK 183 Query: 204 IDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRL 263 + IGE + + F + +Y R+ TSQLS L+ G L + +L Sbjct: 184 VTEHINIGEAKSQQQWQAFLNNNIEHYQYYREYLPETLTSQLSIALAYGFLDINEIMRQL 243 Query: 264 KEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLL 323 E + D + +++ EL++REFY LM +YP F + I W+++ Sbjct: 244 LERYHD----NEENYEAFIRELLFREFYYVLMVYYPETAHTS-FNDKYKHITWSENQSDF 298 Query: 324 QAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDG 383 AWK+G TG+PIIDAAM +L G+MHNR+RM+TA FL K+L +DW GE YF + L+D Sbjct: 299 NAWKEGRTGYPIIDAAMHELKQTGFMHNRMRMVTAQFLTKELFIDWTWGENYFKNLLIDY 358 Query: 384 DLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAP 443 D ASN GWQW+ASTG D+VPYFR+FNP Q +RFD +G +I+ +LP+ NVP Y+H P Sbjct: 359 DAASNVHGWQWSASTGTDAVPYFRMFNPIRQSERFDKKGLYIKTYLPQWANVPASYVHEP 418 Query: 444 --HSWLDKN---DLSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481 H+ K+ DL NYP PIVDH++A H + Q+ KKQ+ Sbjct: 419 WKHAQTLKDYGIDLGTNYPWPIVDHQQARAHVMEQF---KKQA 458 >gi|312138453|ref|YP_004005789.1| deoxyribodipyrimidine photolyase [Rhodococcus equi 103S] gi|311887792|emb|CBH47104.1| putative deoxyribodipyrimidine photolyase [Rhodococcus equi 103S] Length = 443 Score = 226 bits (577), Expect = 5e-57, Method: Compositional matrix adjust. Identities = 153/485 (31%), Positives = 220/485 (45%), Gaps = 59/485 (12%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M+ LVW R DLR+ D L AA + + +F+ G R F+Y SL Sbjct: 1 MTQSLVWFRRDLRVGDLPTLSAAGE----RALGLFVLDDRLLGPSGGPRRD--FLYRSLS 54 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 + + L + +V + D +E + ++ + Y RD + +R Sbjct: 55 ALDEQLDGRLLVVR-------GDPVEVVPLVAKAIGAQEVHVSADYGPYGRERDAAVAER 107 Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQA------------DL 174 + + + PG + YKV+TP+ K + + +A D Sbjct: 108 VDLVTTGSPY----AVAPGRVTKDDGSPYKVFTPWFKRWLDHGWRAPASTGADTLDWIDP 163 Query: 175 RSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQR 234 + V R P ++ P GE AL FC + + Y +R Sbjct: 164 DDVDVSKARNAIPAPDASGP--------------AAGEAAALERWSAFCDDDLIRYDAER 209 Query: 235 DIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHL 294 D P + TS++S YL G + PR DL K GA + ++ WR+FY + Sbjct: 210 DRPDLDTTSRMSVYLKFGNIHPRTM-------LADLARKRSHGAEQYRRQVAWRDFYADI 262 Query: 295 MAFYPSVCM---GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHN 351 + P F + D+ + AW +G TGFPI+DA MRQL + GWMHN Sbjct: 263 LFQRPDSARRNYDAKFDAMRHDTGRDADA-MFAAWCEGRTGFPIVDAGMRQLVSEGWMHN 321 Query: 352 RLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNP 411 R+RMI ASFLVKDL + W G +FM L+DGDLASN GWQW A +G D+ PYFR+FNP Sbjct: 322 RVRMIVASFLVKDLHLPWWRGARFFMQHLVDGDLASNQHGWQWTAGSGTDASPYFRVFNP 381 Query: 412 TIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTL 471 T QG++FDP G ++R W+PEL V + +H K+ YP PIVDH + L Sbjct: 382 TGQGEKFDPTGDYVRRWVPELRGVRGKAVHTL-----KDARPEAYPDPIVDHAEERREAL 436 Query: 472 NQYYA 476 +Y A Sbjct: 437 ARYGA 441 >gi|183981685|ref|YP_001849976.1| DNA photolyase, PhrI [Mycobacterium marinum M] gi|183175011|gb|ACC40121.1| DNA photolyase, PhrI [Mycobacterium marinum M] Length = 447 Score = 226 bits (576), Expect = 6e-57, Method: Compositional matrix adjust. Identities = 156/475 (32%), Positives = 232/475 (48%), Gaps = 37/475 (7%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M+ L+W R DLR+ D+ AL AA + + V+A F+ P G+ R+ F+ SL Sbjct: 1 MTRALLWFRRDLRLGDHPALAAAADSEE--VLACFVVDPRLEASSGL--RRLQFLGDSLR 56 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 Q+ +L + +V + + +++ + + R RRD+ + Sbjct: 57 QLNDALQGRLLVTRGRPEQRIPLIAKAIEASSVHVSGDFAPFGR-------RRDERVAAG 109 Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 L RV + L+ PG ++ + Y+V+TPF + +A + P A L Sbjct: 110 LG-RVPLVATGSPYLVSPGRVVKNDGSPYQVFTPFFRKWQDARWRAPAGTGPGSACWLDP 168 Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246 T D P +D GE A+ F K+ Y RD P +GTS++S Sbjct: 169 AQTDIEQCEIPD-PGTELD--LAAGEAAAIREWTAFRTAKLDRYEHDRDRPDFEGTSRMS 225 Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP 306 +L G + PR V + +GA S+L EL +R+FY ++ +P+ Sbjct: 226 AHLKFGTIHPRT--------MVAGMDLTGTGARSYLRELAFRDFYGAVLHHWPASA---- 273 Query: 307 FIPWT---EKIEWNKDS---HLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASF 360 + W + I + D+ L + WK G TG+P++DA MRQL G+MHNR+RMI ASF Sbjct: 274 WHNWNSNFDGIVTDTDADARRLFECWKAGETGYPLVDAGMRQLRETGFMHNRVRMIAASF 333 Query: 361 LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDP 420 LVKDL + W+ G +F+ QL DGDLASN GWQW+A G D+ PYFRIFNP+ Q ++FDP Sbjct: 334 LVKDLHLPWQWGAAWFLDQLTDGDLASNQHGWQWSAGCGTDAAPYFRIFNPSAQAEKFDP 393 Query: 421 QGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYY 475 G +IR W+PEL +V +H YP PIVDH L +Y+ Sbjct: 394 AGDYIRRWVPELRDV--DNVHRIQR--RGGPCPSTYPAPIVDHGTERAEALRRYH 444 >gi|302530487|ref|ZP_07282829.1| deoxyribodipyrimidine photo-lyase [Streptomyces sp. AA4] gi|302439382|gb|EFL11198.1| deoxyribodipyrimidine photo-lyase [Streptomyces sp. AA4] Length = 445 Score = 226 bits (576), Expect = 6e-57, Method: Compositional matrix adjust. Identities = 152/472 (32%), Positives = 233/472 (49%), Gaps = 37/472 (7%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 ++W R DLR+ D+ AL+ A +S ++A+++ G S R + F+ SL ++ K Sbjct: 1 MLWFRRDLRLRDHAALFEAAKHSK-HLLALYVLDDRLLEPAG-SPRIA-FLLNSLRELDK 57 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130 +LS + +V + + + + Y R+ R D + E +HR Sbjct: 58 ALSGRLMVRCGDPVREVVAAAREIRAAAVHVSADTAPYGRE------RDDAVAEALAEHR 111 Query: 131 VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPA---IRLTGP 187 + + PG + Y+V+TPF +A Q+ P PA + + Sbjct: 112 IQWVPTGSPYAVTPGRVTKPDGTPYRVFTPFYRAWAQH-------GWPRPADTNVSIVDW 164 Query: 188 VTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSP 247 V P++ P + + P GE+ AL ++F + + Y +RD P GT++LSP Sbjct: 165 VKPAS-SEPLPEPPEVECELPPAGEEAALAGWQEFLADGLAEYATERDRPDHAGTTRLSP 223 Query: 248 YLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPF 307 YL G + PR DL GA + +EL WREF+ ++ P + + Sbjct: 224 YLRWGAIHPRTM-------LADLAGNRSEGAQALRSELCWREFHADVLWHRPETAR-RNY 275 Query: 308 IPWTEKIEWNKDS---HLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364 + + ++ + W++G TG+PI+DA MRQL GWMHNR+RMI ASFLVKD Sbjct: 276 DQRFDGMRYDTGKTAREMFALWREGRTGYPIVDAGMRQLLAEGWMHNRVRMIVASFLVKD 335 Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424 L + W G +FM L+DGDLASN WQW A +G D+ PYFRIFNPT QG++FDP+G + Sbjct: 336 LHLPWWWGARHFMKHLVDGDLASNQLNWQWVAGSGTDAAPYFRIFNPTTQGQKFDPKGDY 395 Query: 425 IRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYA 476 +R ++PEL V + +H + YP PIVDH + L +Y A Sbjct: 396 VRRYVPELRGVAGKAVHV------LKERPEGYPQPIVDHAEERQVALQRYGA 441 >gi|148238598|ref|YP_001223985.1| deoxyribodipyrimidine photolyase [Synechococcus sp. WH 7803] gi|147847137|emb|CAK22688.1| Deoxyribodipyrimidine photolyase [Synechococcus sp. WH 7803] Length = 492 Score = 226 bits (576), Expect = 6e-57, Method: Compositional matrix adjust. Identities = 162/487 (33%), Positives = 225/487 (46%), Gaps = 43/487 (8%) Query: 8 SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPE----QWRQHGISARQSHFIYA 63 S L W R DLR+ DN L+AA A V V++ P ++ + F+ Sbjct: 4 SRTLFWHRRDLRLADNTGLHAAAALGPA-VTGVYVLDPAIIAPPPELPPMAPARLWFLVE 62 Query: 64 SLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLL 123 SL+++Q+ G D ++ L + ++R E RD+ + Sbjct: 63 SLVELQQRWRDAGSRLLVVA----GDPVQRLPQLASLLEAAAVVWSRDVEPYARERDRQV 118 Query: 124 EKRLQHRVICKSFD-DSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPA- 181 + LQ D D +L+ P + Y+VY PF + + ++ ++ P Sbjct: 119 ARALQASGRKVLVDWDQLLVAPELLKTGGGDPYRVYGPFLRNWRGQVELSEPGTVEAPTG 178 Query: 182 -IRLTGP------VTPSNIPRFF------------DYPFQAID--PMFPIGEQNALHILR 220 I L + R + F+ +D P P GE A L Sbjct: 179 LIDLDAACLDALQTAAGELGRLCAEGQRDLEQLRSGHGFKGMDLCPCRP-GEAAAAGQLA 237 Query: 221 KFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLL--IKPKSGA 278 F + Y R+ P GTS LS LS+G +SPRQ W + DL + + Sbjct: 238 VFADGPLLGYEPDRNFPGTAGTSGLSAALSVGTVSPRQAWC-AAQAAKDLARSDEQRQAI 296 Query: 279 FSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDA 338 W EL WREFY+ + +P + G P+ + W + WK G TG PIIDA Sbjct: 297 AVWEQELCWREFYQQALFHFPELADG-PYREQWRRFPWENNEDWFDFWKDGQTGMPIIDA 355 Query: 339 AMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAAST 398 AMRQLN GWMHNR RMI ASFLVKDL+ DWR GE FM +DGDLA+NNGGWQW+AS+ Sbjct: 356 AMRQLNETGWMHNRCRMIVASFLVKDLICDWRWGERAFMELEVDGDLAANNGGWQWSASS 415 Query: 399 GNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQ-YIHAPHSWLDKNDLSLNYP 457 G D P RIFNP Q +FD G +IR W+PEL +V T+ + L++ YP Sbjct: 416 GMDPKP-LRIFNPATQASKFDADGDYIRRWVPELRHVCTKDLLSGDIGALERR----GYP 470 Query: 458 LPIVDHK 464 P+V+HK Sbjct: 471 EPLVNHK 477 >gi|158424448|ref|YP_001525740.1| deoxyribodipyrimidine photolyase [Azorhizobium caulinodans ORS 571] gi|158331337|dbj|BAF88822.1| deoxyribodipyrimidine photolyase [Azorhizobium caulinodans ORS 571] Length = 484 Score = 226 bits (576), Expect = 7e-57, Method: Compositional matrix adjust. Identities = 154/488 (31%), Positives = 238/488 (48%), Gaps = 24/488 (4%) Query: 5 TAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYAS 64 +A ++W R+DLR+ DN AL AA S +V+A+++ + + ++ S Sbjct: 2 SAAGTAVIWFRDDLRLADNPALAAAA-ASGRRVLALYVLDEDSPGVRALGGAALWWLAGS 60 Query: 65 LLQVQKSLSQKGI--VFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKL 122 L ++ L Q G+ V + + + L + +N + E D+ Sbjct: 61 LRALKAELGQHGVPLVLRRGEAGRIVPDVARAAGADL------VAFNWRAGKAEQAVDEA 114 Query: 123 LEKRLQHR-VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPA 181 + + L V + +L PGS+ + + ++ F +A ++ R+LPVP Sbjct: 115 VARHLSAAGVTVERTLGHLLHAPGSVRGTGGGLPRTFSSFMRAAVKGRDIG--RTLPVPR 172 Query: 182 IRLTGPVTPSNIPRFFDYPFQ-----AIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDI 236 + P+ ++ + P Q + + GE A L F + + Y E RD Sbjct: 173 LNGAAPLPCDDLEEWALEPTQPDWAGGLRTTWHPGEAAARARLEAFLADGLAGYGEGRDR 232 Query: 237 PAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMA 296 P S+LSPYL G +SPRQ D P + EL WREF HL+ Sbjct: 233 PDQTHVSRLSPYLRFGEISPRQV-LLAALAAGDAGTVPAKDVQKFEAELYWREFSHHLLF 291 Query: 297 FYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMI 356 P + + + W + L+ W++G TG+PI+DA MRQL GWMHNR+RMI Sbjct: 292 AVPDLAR-RNLQASFDAFPWRECPGDLKKWQKGRTGYPIVDAGMRQLWQTGWMHNRVRMI 350 Query: 357 TASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGK 416 ASFL K LL+ W+ GE +F L+D DLA+N WQW A +G D+ PYFRIFNP +QG+ Sbjct: 351 VASFLCKHLLLPWQDGELWFWDTLVDADLANNAASWQWVAGSGADAAPYFRIFNPVLQGE 410 Query: 417 RFDPQGTFIRHWLPELNNVPTQYIHAPHSW---LDKNDLSL--NYPLPIVDHKKACHHTL 471 +FDP+GT++R ++PEL +VP + IH P S L + + L +YP P+V+H A L Sbjct: 411 KFDPEGTYVRTYVPELKDVPARLIHQPWSAPLELTRYGVRLGRDYPEPMVEHGAARDRAL 470 Query: 472 NQYYAAKK 479 + +K Sbjct: 471 RAFEHTRK 478 >gi|189502200|ref|YP_001957917.1| hypothetical protein Aasi_0813 [Candidatus Amoebophilus asiaticus 5a2] gi|189497641|gb|ACE06188.1| hypothetical protein Aasi_0813 [Candidatus Amoebophilus asiaticus 5a2] Length = 486 Score = 226 bits (576), Expect = 7e-57, Method: Compositional matrix adjust. Identities = 157/487 (32%), Positives = 248/487 (50%), Gaps = 35/487 (7%) Query: 17 DLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQKSLSQKG 76 +LR D L ++ +I +FI P+ + G +++ ++Y S+ ++ Q Sbjct: 13 NLRFHDQPLLLEVLQHTQP-IIPIFINDPKVIERLGEASQ--WWLYQSIRAFKQ---QWK 66 Query: 77 IVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHRVIC-KS 135 + DS+ L + K++ ++Y E D+ + + L I K Sbjct: 67 SAYNIELILRTGDSVRVLQQLLQETNANKIYLGKRYTKLEREIDERIYEELNRDGITIKF 126 Query: 136 FDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPSNIPR 195 F+ +L P +I N ++++TPF K + ++ADL P P G P N Sbjct: 127 FNTHLLFEPANIKNQQGNSFQIFTPFWKTCLTKTIEADL---PAPDHIFNGYNQPINSDD 183 Query: 196 FFDYPF--------QAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQG-TSQLS 246 D+ + + + + + E AL+ L F K + Y RD+ A +SQLS Sbjct: 184 LSDWKWGHSQAAWTRKLANHWHLSELAALNKLAIFLKNSLAGYNNNRDLIASPSFSSQLS 243 Query: 247 PYLSIGVLSPRQCWNRLKEEFV-DLLIKPKSGAFSWLNELIWREFYRHLMAFYPS---VC 302 PYL G +S ++ +N + D I+ F L E+ WREF +L+ +PS V Sbjct: 244 PYLRWGQISAKKIFNEVIHTMERDPTIQQDGNTF--LKEIGWREFSYYLLYHHPSMQEVP 301 Query: 303 MGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLV 362 + K F + + + LL+ W++G TGFPIIDA MRQL GWM NRLRMI ASFL+ Sbjct: 302 LNKRF----QDFPYENNLSLLEKWQKGTTGFPIIDAGMRQLWLEGWMPNRLRMIVASFLI 357 Query: 363 KDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQG 422 KDLL++W+ G+ +F+ L+D D A+N WQW A G D+ PYFRIFNP QGK+FD +G Sbjct: 358 KDLLINWQFGQAWFIDTLVDADPANNANSWQWVAGCGTDASPYFRIFNPITQGKKFDSEG 417 Query: 423 TFIRHWLPELNNVPTQYIHAPH----SWLDKNDLSL--NYPLPIVDHKKACHHTLNQYYA 476 +IR ++PEL ++PT+YIH P + ++ ++ + +YP PIVDH + L+ + Sbjct: 418 KYIRKYVPELKDLPTKYIHQPWEMPITLQEEYNVIIGKDYPHPIVDHTIQKNKALDCWKE 477 Query: 477 AKKQSLL 483 K + L Sbjct: 478 FKGKGYL 484 >gi|85702996|ref|ZP_01034100.1| deoxyribodipyrimidine photolyase [Roseovarius sp. 217] gi|85671924|gb|EAQ26781.1| deoxyribodipyrimidine photolyase [Roseovarius sp. 217] Length = 473 Score = 226 bits (576), Expect = 7e-57, Method: Compositional matrix adjust. Identities = 154/478 (32%), Positives = 223/478 (46%), Gaps = 27/478 (5%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 LVW R DLR+ D+ AL AA +I VFI G+ A + SL + + Sbjct: 8 LVWFRRDLRLADHPALCAAIEGG-GPIIPVFIHDDSV---AGLGAAPKWRLGLSLASLAR 63 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL-QH 129 L +G + S ++E L + + + ++R Y+ + RDK ++ L + Sbjct: 64 DLEDRGSRLILRRGS----ALEVLRALVAETGAGAVHWSRLYDPQAIERDKAVKSALRED 119 Query: 130 RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189 +S V+ P ++ Y+VY+P +A+ V LR+ PV+ Sbjct: 120 GAAAQSHAGHVMFEPWTVETKTGGFYRVYSPMWRAVKDREVAVPLRAPSTILAPDMWPVS 179 Query: 190 PS----NIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245 ++ + P +GE A+ L F + Y + R+ PA++ TS L Sbjct: 180 DGLDDWHMGAAMVRGAEVCLPYQRVGEAAAMDRLHAFTDGAISDYKDARNFPAVEATSSL 239 Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305 S L+ G +SPRQCW+ + L GA WL EL+WREF HLM P + Sbjct: 240 SENLTYGEVSPRQCWHAGQRA----LHAGAQGAEHWLKELVWREFAYHLMYHTPHILTDN 295 Query: 306 PFIPWTEKIEWNKDSHL--LQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363 W + W+ D+ + AWKQG TG P +DAAMR++ G MHNR RMI AS+L K Sbjct: 296 WRTDW-DAFPWSTDADHPDVIAWKQGRTGEPFVDAAMREMYVTGKMHNRARMIVASYLTK 354 Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423 L+ W++G ++F L D D ASN GWQWAA G D+ PYFR+FNP Q ++FD G Sbjct: 355 HLMTHWKVGLDWFADCLTDWDPASNAMGWQWAAGCGPDAAPYFRVFNPETQLEKFDRDGA 414 Query: 424 FIRHWLPELNNVPT----QYIHA-PHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYA 476 + R W+ E P Y A P W + S YP +VD + L Y A Sbjct: 415 YTRRWIAEGQGQPQATALDYFKAIPRRWSLSSTSS--YPNRLVDLAGGRNRALAAYEA 470 >gi|78486463|ref|YP_392388.1| deoxyribodipyrimidine photolyase [Thiomicrospira crunogena XCL-2] gi|78364749|gb|ABB42714.1| Deoxyribodipyrimidine photo-lyase type I [Thiomicrospira crunogena XCL-2] Length = 479 Score = 226 bits (575), Expect = 7e-57, Method: Compositional matrix adjust. Identities = 163/498 (32%), Positives = 243/498 (48%), Gaps = 58/498 (11%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 LVWL+ +LRI + AL AA SD ++A F PEQ I A + ++ SL Q+Q+ Sbjct: 4 LVWLQRELRINHHPALEAAMAASDDIIVAYF-HDPEQ----TIGAANTVWLANSLQQLQQ 58 Query: 71 SLSQK--------GIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQ--YEINEVRRD 120 + GI Q L+ ++ ++FY Q + +++ Sbjct: 59 DFKTRHGRLWCLEGIFEQQ------------LEQVIQTHQIEQVFYTFQLGHPFKAMQQQ 106 Query: 121 KL-LEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPV 179 L + +R Q V ++F+ L +LN + Q YKV+TPF L + L + + S P+ Sbjct: 107 ALNVCQRCQ--VPLRAFETENWLHYNQLLNQSGQPYKVFTPFYNTLSRKLSELEPFSDPI 164 Query: 180 PAIRLTGPVT---------PSNIPRFFDYPF-QAIDPMFPIGEQNALHILRKFCKEKVYY 229 + T P ++ + P+ + I + +GE A F E + Sbjct: 165 DTLEKTARTVCQSGQDQNLPQSLNQILARPWARKIMQHWQVGEHKAWSKFETFITEGLAN 224 Query: 230 YVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKP---KSGAFSWLNELI 286 Y + RD PAI GTSQLSP+L G L R + E + L +P WL +L Sbjct: 225 YEQDRDFPAIDGTSQLSPHLHFGELHSR----AIVFELLSLETEPTIANQAIRVWLRQLA 280 Query: 287 WREFYRHLMAFYPSVCMGKPFIPWTEKI------EWNKDSHLLQAWKQGYTGFPIIDAAM 340 WREF R ++ +P PF E + ++ S QAW +G TG PIIDA M Sbjct: 281 WREFARAILWHFPHT-ETHPFQAKFETFYRPLAEDDSESSKNYQAWCEGRTGVPIIDAGM 339 Query: 341 RQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGN 400 +QL GWMHNR+RM+ AS+L K+ +DWR G ++F L+D D A+N GWQW A G Sbjct: 340 KQLWETGWMHNRVRMLVASWLTKNADIDWRAGAQWFNDTLVDADPANNTLGWQWVAGCGV 399 Query: 401 DSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPI 460 D+ PY+R+FNP Q ++FD G ++R WLPEL ++IHAP WL + + PI Sbjct: 400 DAAPYYRLFNPVRQSEKFDANGQYLRQWLPELKTYSNKHIHAP--WLIAPNEK--HFCPI 455 Query: 461 VDHKKACHHTLNQYYAAK 478 +D ++ H L++ K Sbjct: 456 IDLTESRQHHLDKVATLK 473 >gi|254522734|ref|ZP_05134789.1| deoxyribodipyrimidine photolyase [Stenotrophomonas sp. SKA14] gi|219720325|gb|EED38850.1| deoxyribodipyrimidine photolyase [Stenotrophomonas sp. SKA14] Length = 476 Score = 226 bits (575), Expect = 8e-57, Method: Compositional matrix adjust. Identities = 158/476 (33%), Positives = 236/476 (49%), Gaps = 32/476 (6%) Query: 1 MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHF 60 MKA +SV LVW R DLR+ DN AL AA + +V+ V+I P + + A + Sbjct: 1 MKAMH-VSVALVWFRRDLRLQDNPALQAAL-EAGHEVVPVYIHAPHEEGEWVPGAASDAW 58 Query: 61 IYASLLQVQKSLSQKG--IVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVR 118 + SL + L +G +V ++ DS+ L + Q +++NR+YE Sbjct: 59 RHRSLAALDADLRSRGSSLVLRH------GDSLATLQALVEQIGAEAVYWNRKYEPATQP 112 Query: 119 RDKLLEKRL-QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSL 177 RD +++ L +H + +S + S+L P I Q YKV+TP+ + ++ + L + Sbjct: 113 RDAEIKRTLREHGIDAQSCNGSLLFEPWDIATQQGQPYKVFTPYWRNVLSHWCLPALTAA 172 Query: 178 P--VPAIRLTG-PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQR 234 P + A + G + + D+ P GE AL L F + Y EQR Sbjct: 173 PKALTAHKADGLALDELRLAPTLDWDSGFWQHWRP-GEAGALEALSVFEDGALRGYREQR 231 Query: 235 DIPAIQGTSQLSPYLSIGVLSP---RQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFY 291 D+P GTS++SP+L G ++P L+ D I +L +L WR+F Sbjct: 232 DLPDRVGTSRMSPHLHFGEIAPWRIAHALEGLRSAGTDADID------GYLRQLGWRDFA 285 Query: 292 RHLMAFYPSVCMGKPFIPWTEKIEWNKDS-HLLQAWKQGYTGFPIIDAAMRQLNTIGWMH 350 HL+ +P P ++ W S L W++G TG PI+DA +R+L G+MH Sbjct: 286 YHLLHHFPKTPTDN-LNPRFDRFPWATPSVAQLHDWQRGNTGVPIVDAGLRELWHTGYMH 344 Query: 351 NRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFN 410 NR+RMI AS+L K L W G +F L+D DLA+N GWQW A TG D+ PYFR+FN Sbjct: 345 NRVRMIVASYLCKHLRAHWLHGARWFWDTLVDADLANNTMGWQWVAGTGADAAPYFRVFN 404 Query: 411 PTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYP----LPIVD 462 P Q ++FDPQ +I W+PEL +P + AP W L+ + P P+VD Sbjct: 405 PVTQAEKFDPQARYISRWVPELAALPVKARFAP--WQHPQLLAAHAPGYPRTPLVD 458 >gi|260433957|ref|ZP_05787928.1| deoxyribodipyrimidine photo-lyase [Silicibacter lacuscaerulensis ITI-1157] gi|260417785|gb|EEX11044.1| deoxyribodipyrimidine photo-lyase [Silicibacter lacuscaerulensis ITI-1157] Length = 474 Score = 225 bits (574), Expect = 1e-56, Method: Compositional matrix adjust. Identities = 157/494 (31%), Positives = 238/494 (48%), Gaps = 52/494 (10%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFI--------ATPEQWRQHGISARQSHFIY 62 L+W R DLR++D+ AL AA S VI VFI +WR + Sbjct: 9 LIWFRQDLRLSDHPALSAAV-RSGRPVIPVFIRDSLVDDLGAAPKWR-----------LS 56 Query: 63 ASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKL 122 L + ++L KG D L + + +++++R Y+ + + RD Sbjct: 57 LGLAALAQNLEHKGSKLVLRSGPALDA----LKALIDETGAREVYWSRAYDPDAIARDTH 112 Query: 123 LEKRLQH-RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPA 181 ++ L + KSF +L P ++ + ++V+TP +A+ Q V + P P Sbjct: 113 IKSVLTELGLTAKSFPGHLLFEPWTVATKTGKPFRVFTPMWRAVAQRDVPS---PDPAPE 169 Query: 182 IRLTGPVTPSN-------IPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQR 234 P+ P++ + + GE A L F E++ Y QR Sbjct: 170 RLAAPPLWPASEHLDDWGLGHAMRRGAGIVGQHVQAGETAAEARLDAFM-ERLDAYPAQR 228 Query: 235 DIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHL 294 D A GTS LS YL++G + PR W+R+K + I GA ++L +L+WREF HL Sbjct: 229 DALADDGTSHLSEYLALGEIGPRTVWHRVKGAALIGSI----GADAFLRQLVWREFAYHL 284 Query: 295 MAFYPSVCMGKPFIPWTEKIEWNKD--SHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNR 352 M P + + + + P + WN+D + ++AW TG P++DA +R++ G MHNR Sbjct: 285 MYHTPHL-LTQNWRPEWDGFPWNEDIETPEVRAWMTARTGIPVVDAGLREMYVTGRMHNR 343 Query: 353 LRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPT 412 RMI AS+L K L+ W+IG ++F L+D D ASN GWQW A +G D+ P+FRIFNP Sbjct: 344 ARMIVASYLTKHLMTHWKIGMDWFADCLVDWDAASNAMGWQWVAGSGPDASPFFRIFNPQ 403 Query: 413 IQGKRFDPQGTFIRHWLPELNNVPTQ----YIHA-PHSW-LDKNDLSLNYPLPIVDHKKA 466 Q ++FDP G ++R W+ E + P + Y A P SW L +D YP P+VD K Sbjct: 404 TQAEKFDPTGAYVRRWVAEGQSDPPKTALSYFEAIPRSWNLSPDD---AYPQPVVDLKVG 460 Query: 467 CHHTLNQYYAAKKQ 480 L Y K Q Sbjct: 461 RERALAAYEGRKNQ 474 >gi|116075564|ref|ZP_01472823.1| Deoxyribodipyrimidine photolyase [Synechococcus sp. RS9916] gi|116066879|gb|EAU72634.1| Deoxyribodipyrimidine photolyase [Synechococcus sp. RS9916] Length = 492 Score = 225 bits (573), Expect = 1e-56, Method: Compositional matrix adjust. Identities = 172/490 (35%), Positives = 230/490 (46%), Gaps = 49/490 (10%) Query: 8 SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVF-----IATPEQWRQHGISARQSHFIY 62 S L W R DLR+ DNK L AA A V V+ I TP AR F+ Sbjct: 4 SRTLFWHRRDLRLADNKGLQAAAALGSA-VTGVYVLDPAIITPPHHLPPMAPARL-WFLV 61 Query: 63 ASLLQVQKSLSQKG---IVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRR 119 +L ++Q+ G IV D + L L ++R E R Sbjct: 62 ETLRELQQRWRDAGSRLIVVA-------GDPVAVLPRLAALLEAPTLVWSRDVEPYARER 114 Query: 120 DKLLEKRLQHRVICKSFD-DSVLLPPGSILNHALQMYKVYTPFRKALIQNL-------VQ 171 D+ + K LQ D D +L+ P + Y+VY PF + + V+ Sbjct: 115 DRQVAKALQADGRKVLVDWDQLLVAPELLKTGGGDPYRVYGPFLRNWRGQVERTEPSTVE 174 Query: 172 A-----DLRSLPVPAI--------RLTGPVTPSNIPRFFDYPFQAID--PMFPIGEQNAL 216 A DL S + AI RL ++ F+ ++ P P GE A Sbjct: 175 APTGLCDLESEQLEAISSGAGDLGRLCAEGQRELERLQVEHGFRGMELCPCRP-GEAAAA 233 Query: 217 HILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKE-EFVDLLIKPK 275 L F + Y R+ P + GTS LS LS+G LSPRQ W +E + + + + Sbjct: 234 EQLATFVDGPLLAYEPDRNFPGVVGTSYLSAALSVGTLSPRQAWCAAQEMKGLARSDEQR 293 Query: 276 SGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPI 335 W EL WREFY+ + +P + G P+ + W + WK G TG PI Sbjct: 294 QAITVWEQELGWREFYQQALFHFPELANG-PYRDQWRRFPWENNEDWFDFWKDGQTGMPI 352 Query: 336 IDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWA 395 IDAAMRQLN GWMHNR RMI AS+LVKDL+ DWR GE FM +DGDLA+NNGGWQW+ Sbjct: 353 IDAAMRQLNETGWMHNRCRMIVASYLVKDLICDWRWGERAFMELEVDGDLAANNGGWQWS 412 Query: 396 ASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQ-YIHAPHSWLDKNDLSL 454 AS+G D P RIFNP Q +FD G +IR W+PEL +V T+ + + L++ Sbjct: 413 ASSGMDPKP-LRIFNPATQASKFDADGDYIRRWVPELRHVNTKDLLSGEIAALERR---- 467 Query: 455 NYPLPIVDHK 464 YP +V+HK Sbjct: 468 GYPELLVNHK 477 >gi|325676163|ref|ZP_08155844.1| deoxyribodipyrimidine photolyase [Rhodococcus equi ATCC 33707] gi|325553073|gb|EGD22754.1| deoxyribodipyrimidine photolyase [Rhodococcus equi ATCC 33707] Length = 457 Score = 225 bits (573), Expect = 1e-56, Method: Compositional matrix adjust. Identities = 152/486 (31%), Positives = 220/486 (45%), Gaps = 59/486 (12%) Query: 6 AMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASL 65 A++ LVW R DLR+ D L AA + + +F+ G R F+Y SL Sbjct: 14 AVTQSLVWFRRDLRVGDLPTLSAAGE----RALGLFVLDDRLLGPSGGPRRD--FLYRSL 67 Query: 66 LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125 + + L + +V + D +E + ++ + Y RD + + Sbjct: 68 SALDEQLDGRLLVVR-------GDPVEMVPLVAKAIGAQEVHVSADYGPYGRERDAAVAE 120 Query: 126 RLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQA------------D 173 + + + PG + YKV+TP+ K + + +A D Sbjct: 121 HVDLVTTGSPY----AVAPGRVTKDDGSPYKVFTPWFKRWLDHGWRAPASTGADTLDWID 176 Query: 174 LRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQ 233 + V R P ++ P GE AL FC + + Y + Sbjct: 177 PDDVDVSKARTAIPAPEASGP--------------AAGEGAALERWSAFCDDDLIRYDAE 222 Query: 234 RDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRH 293 RD P + TS++S YL G + PR DL K GA + ++ WR+FY Sbjct: 223 RDRPDLDTTSRMSVYLKFGNIHPRTM-------LADLARKRSHGAEQYRRQVAWRDFYAD 275 Query: 294 LMAFYPSVCM---GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMH 350 ++ P F + D+ + AW +G TGFPI+DA MRQL + GWMH Sbjct: 276 ILFQRPDSARRNYDAKFDAMRHDTGRDADA-MFAAWCEGRTGFPIVDAGMRQLLSEGWMH 334 Query: 351 NRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFN 410 NR+RMI ASFLVKDL + W G +FM L+DGDLASN GWQW A +G D+ PYFR+FN Sbjct: 335 NRVRMIVASFLVKDLHLPWWRGARFFMQHLVDGDLASNQHGWQWTAGSGTDASPYFRVFN 394 Query: 411 PTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHT 470 PT QG++FDP G ++R W+PEL V + +H K+ YP PIVDH + Sbjct: 395 PTGQGEKFDPTGDYVRRWVPELRGVRGKAVHTL-----KDARPQAYPDPIVDHAEERREA 449 Query: 471 LNQYYA 476 L +Y A Sbjct: 450 LARYGA 455 >gi|261855425|ref|YP_003262708.1| deoxyribodipyrimidine photo-lyase [Halothiobacillus neapolitanus c2] gi|261835894|gb|ACX95661.1| Deoxyribodipyrimidine photo-lyase [Halothiobacillus neapolitanus c2] Length = 490 Score = 225 bits (573), Expect = 2e-56, Method: Compositional matrix adjust. Identities = 168/497 (33%), Positives = 238/497 (47%), Gaps = 39/497 (7%) Query: 11 LVWLRNDLRITDNKALYAACHNS--DAKVIAVFI----------ATPEQWRQHGISARQ- 57 +VW R DLR+ D+ AL AA +I V+I A + G +AR Sbjct: 4 IVWFRQDLRLGDHPALDAAIQTGADQGHIIPVYIHPGYAPSDQTADATKPLYEGAAARWW 63 Query: 58 SHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEV 117 H SL + S + I+ Q + I + + ++ +NR+ E Sbjct: 64 RHHSLRSLAERLASCGSRLIIRQGEPLAELQRLIH-------ETKANRVVWNRRMEPAAR 116 Query: 118 RRDKLLEKRLQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRS 176 D ++ L+ I SF+ + L P +I N + +KV+TP+ KA++ DL + Sbjct: 117 AEDTRIKAALRAEGINVDSFNGNYLHEPWTIQNKQGKPFKVFTPYWKAVVA--AGLDLPT 174 Query: 177 LPVPAIRLTGPVTPSN--IPRFFDYPFQAIDPMF----PIGEQNALHILRKFCKEKVYYY 230 P P T P ++ I P A D F GE A F + Y Sbjct: 175 YPEPDNLPTVPRALNSLAIDELELLPAIAWDKDFYNHWQPGEPGAWSRFEDFLP-LIDEY 233 Query: 231 VEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREF 290 E R+ G S+LS +L G +SPRQ L + +L +P+ G ++ EL WREF Sbjct: 234 AEARNHLIGTGVSKLSAHLHFGEISPRQIVRYLLDTRGSVL-EPR-GIEHFVRELGWREF 291 Query: 291 YRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMH 350 +L YP + P +W L+AW++G TG P++DAAMR L GWMH Sbjct: 292 GAYLAYHYPQ-TVDAPLDARFLNFKWRDAPDDLRAWQRGQTGIPVVDAAMRCLWQTGWMH 350 Query: 351 NRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFN 410 NR RMI ASFL K+LL+DWR G +FM L+D D SN GWQW A TG D+ PYFRIFN Sbjct: 351 NRARMIVASFLTKNLLIDWRCGAAWFMDTLVDADEPSNTAGWQWTAGTGADAAPYFRIFN 410 Query: 411 PTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAP----HSWLDKNDLSLN--YPLPIVDHK 464 P +Q ++FDP GTFIR W+PEL + +Y+ AP + L + + L YP PI D K Sbjct: 411 PVLQAEKFDPDGTFIRRWVPELARLENKYLFAPWTASETALAQAGIVLGKTYPEPISDLK 470 Query: 465 KACHHTLNQYYAAKKQS 481 + L + K+ + Sbjct: 471 VSRQRALVHFDQIKQNT 487 >gi|95929775|ref|ZP_01312516.1| Deoxyribodipyrimidine photolyase [Desulfuromonas acetoxidans DSM 684] gi|95134071|gb|EAT15729.1| Deoxyribodipyrimidine photolyase [Desulfuromonas acetoxidans DSM 684] Length = 475 Score = 224 bits (572), Expect = 2e-56, Method: Compositional matrix adjust. Identities = 157/489 (32%), Positives = 241/489 (49%), Gaps = 41/489 (8%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 ++W R DLR+ DN AL A VI ++I E + A +++ SL + + Sbjct: 10 IMWFRQDLRLHDNPALLTATRL--GPVIPIYILDDEHAADQRMGAASRCWLHRSLDALNQ 67 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130 L +F+ D +E L + + VT +NR YE + RD++++++LQ Sbjct: 68 QLDGHLQLFR----GPADTLLEQLVQHYDCRTVT---WNRCYEPWRINRDRIIKEKLQGL 120 Query: 131 VICKSFDDSVLL-PPGSILNHALQMYKVYTPFRKALIQNLVQADLRS-LPVPAIRLTGPV 188 I D+ LL P +L Y+++TPF + ++ +RS LP PA V Sbjct: 121 GITVHSDNGSLLWEPWQVLKRDQTPYQIFTPFYRHARDSV---PVRSPLPRPAEIALAAV 177 Query: 189 TPSNIPRFFDYPFQAIDP-------MFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQG 241 TP + + D + P + GE A + F +E++ Y E RD+PA Sbjct: 178 TPYSALKLADLELRPNHPWADKVLHHWQPGEAGAQQRWQTFMEEELLGYGEGRDLPAQPH 237 Query: 242 TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPS- 300 S+LSP + G +S Q W+ D A ++ +L WREF + +P Sbjct: 238 VSRLSPAIHWGEISVHQLWH-------DAQAIGHEDALAFQRQLAWREFSVTQLFHHPDM 290 Query: 301 --VCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITA 358 + + + F W+ D+ L W+QG TG P +DA MR+L G MHNR+RM+ Sbjct: 291 DRINLDRRF----NLFPWHDDAEKLNRWQQGLTGIPFVDAGMRELWQTGTMHNRVRMVVG 346 Query: 359 SFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRF 418 SFLVK+L + W G +F LLD DLA+N+ WQW A G D+ PYFRIFNP QG++F Sbjct: 347 SFLVKNLGIHWHHGAAWFWDCLLDADLANNSASWQWIAGCGADAAPYFRIFNPVTQGQKF 406 Query: 419 DPQGTFIRHWLPELNNVPTQYI----HAPHSWLDKNDLSLN--YPLPIVDHKKACHHTLN 472 DP G + RH++PEL +P +Y+ AP L + ++L YP P+VD K + L+ Sbjct: 407 DPHGDYTRHFVPELAKLPNRYLFCPWQAPKGLLQECGITLGGTYPEPMVDIKVSRQQALD 466 Query: 473 QYYAAKKQS 481 Y ++ + Sbjct: 467 AYAHMRQAT 475 >gi|330752085|emb|CBL80595.1| deoxyribodipyrimidine photolyase [uncultured Leeuwenhoekiella sp.] Length = 434 Score = 224 bits (572), Expect = 2e-56, Method: Compositional matrix adjust. Identities = 146/474 (30%), Positives = 222/474 (46%), Gaps = 48/474 (10%) Query: 8 SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67 SV + W R DLR+ DN A SD V+ +FI E + + FIY +L + Sbjct: 3 SVSIFWFRRDLRLDDNVGFLEAL-KSDYPVLPIFIFDKEILDKLPKDDARVTFIYETLQK 61 Query: 68 VQKSLSQKGIVFQYHQCS---NFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLE 124 ++ L H S + I+ V +++ NR YE RRD+ + Sbjct: 62 MRDRLQND------HTSSLALFYGKPIDIWKQILKDYEVKEVYTNRDYEPYAKRRDEEIS 115 Query: 125 KRLQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIR 183 + + I K+F D V+ ++ + Y VYTP++ ++ + + + + Sbjct: 116 SLFEEKDIDFKTFKDQVIFEKDDVVKGDGEPYIVYTPYKNKWLETFNEDNDLKIHYTSQH 175 Query: 184 LTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS 243 L V S +P + + + L + Y + R+ PA GTS Sbjct: 176 LNNLVENSRLPNLTLSEMGFKTSSLKVPDYDVTPTL-------IDNYEDTRNFPAQDGTS 228 Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCM 303 +L P+L G +S R+ + E + W +EL+WREF+ ++ YP + Sbjct: 229 RLGPHLRFGTVSVRKMVKKALAE---------NNQVFW-SELVWREFFMQILYHYPE-TI 277 Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363 F ++I+W + + WK G TGF ++DA MR+LNT G+MHNR+RM+TASFL K Sbjct: 278 NNAFRKKYDRIDWRNNEEEFEKWKTGTTGFLLVDAGMRELNTTGYMHNRVRMLTASFLCK 337 Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423 LL+DWR GE YF +LLD + ASN G WQWAA +G D+ PYFRIFNP Q +FD + Sbjct: 338 HLLIDWRWGETYFAEKLLDYEQASNVGNWQWAAGSGVDAAPYFRIFNPMTQVDKFDKERK 397 Query: 424 FIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477 +I ++PE + + YP +VDHK+A L Y A Sbjct: 398 YIEKFIPEYD-------------------TSEYPEKMVDHKEARERCLKTYKQA 432 >gi|149184696|ref|ZP_01863014.1| hypothetical protein ED21_28298 [Erythrobacter sp. SD-21] gi|148832016|gb|EDL50449.1| hypothetical protein ED21_28298 [Erythrobacter sp. SD-21] Length = 464 Score = 224 bits (572), Expect = 2e-56, Method: Compositional matrix adjust. Identities = 153/488 (31%), Positives = 246/488 (50%), Gaps = 44/488 (9%) Query: 8 SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67 S +VWLR DLR+ D AL+AA VI V++ E+ H +++ SL Sbjct: 3 SPQIVWLRRDLRVADQPALHAAAQA--GPVIPVYVLDDERAGDHAYGGASKVWLHYSLES 60 Query: 68 VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYE-INEVRRDKLLEKR 126 + KS + + D+ + L + + R YE + D+L + Sbjct: 61 LCKSFGNRRSQIVLRKG----DAPQVLAGIADEVGAGCIHAIRHYEPWWKEAEDELRDAL 116 Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 + R +C +D + LLPPGS+ + YK+YTPF K++++ + D+ P Sbjct: 117 EEDRKLCL-YDGNYLLPPGSVTTGSGDPYKIYTPFSKSMLEVMPPRDVLGEPETI----- 170 Query: 187 PVTPSNIPR---FFDYPFQAIDPMFPIG-------EQNALHILRKFCKEKVYYYVEQRDI 236 +P N P D+ P + G ++A H ++ ++V Y E R++ Sbjct: 171 -SSPDNWPESDALEDWELLPSKPDWAGGIRDFWDFGEDAAHERLEWWADEVADYDEGRNL 229 Query: 237 PAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMA 296 P+ TS+LSP+L G +SP Q W+ LK++ D G ++ E+IWR++ ++++ Sbjct: 230 PSNDITSRLSPHLHWGEISPAQVWHALKDKRSD-------GWKTFAKEIIWRDYAQNVID 282 Query: 297 FYPSVCMGKPFIPWTEKIEWN--KDSHL----LQAWKQGYTGFPIIDAAMRQLNTIGWMH 350 +P+ + + + E+ W HL L+ W++G TG+PI+DA MRQL GW+H Sbjct: 283 QFPNYPR-ESYRDYDERTLWRNPNAGHLIEEDLECWQRGMTGYPIVDAGMRQLWQTGWIH 341 Query: 351 NRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFN 410 NR+RMI ASFLVK LL+DWR GE+++ L+D D +N WQW + TG DS + RI Sbjct: 342 NRVRMICASFLVKHLLIDWRHGEQWYWDCLVDADYGNNGVNWQWISGTGVDSNMFSRIMA 401 Query: 411 PTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHT 470 P Q ++FD +IR ++PEL + IH P +D +YP+ ++ HK+A Sbjct: 402 PLSQSEKFD-AAAYIREYVPELAELDDDCIHDP-----SDDRRGDYPVKVIGHKEARERA 455 Query: 471 LNQYYAAK 478 L Y A+K Sbjct: 456 LEAYRASK 463 >gi|254511542|ref|ZP_05123609.1| deoxyribodipyrimidine photolyase [Rhodobacteraceae bacterium KLH11] gi|221535253|gb|EEE38241.1| deoxyribodipyrimidine photolyase [Rhodobacteraceae bacterium KLH11] Length = 479 Score = 224 bits (572), Expect = 2e-56, Method: Compositional matrix adjust. Identities = 162/499 (32%), Positives = 232/499 (46%), Gaps = 44/499 (8%) Query: 1 MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHF 60 M A S ++W R DLR++D+ AL AA ++ VFI + A Sbjct: 1 MDMAPAHSAIILWFRRDLRLSDHPALSAAMRTG-RPIVPVFILDDAV---QALGAAPKWR 56 Query: 61 IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120 + L K LSQ G Q + D L+S +F++R YE + RD Sbjct: 57 LGLGLEAFAKGLSQIGSRLILRQGAALDV----LESLIRDTGAGTVFWSRGYEPVSIARD 112 Query: 121 KLLEKRLQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPV 179 ++ L + I +SF +L P +I + Q ++++TP +A VQ R +P Sbjct: 113 TRIKSALTGQGIEVRSFAGHLLFEPWTIATKSGQPFRMFTPMWRA-----VQG--RDVPT 165 Query: 180 PA---IRLTGPVTPSNIPRFFDYPF--------QAIDPMFPIGEQNALHILRKFCKEKVY 228 P RL P + D+ + P GE A L F ++ Sbjct: 166 PEPGPARLMAPEGWPGSDQLADWQLGRDMRRGARIARPFIRPGEVAARDQLDGFL-HRID 224 Query: 229 YYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWR 288 Y EQRD GTS LS YLS+G + PR W+R++ + GA ++L +L+WR Sbjct: 225 QYAEQRDRVDKTGTSDLSEYLSLGEIGPRMIWHRVQ----NAARTGAPGADAYLRQLVWR 280 Query: 289 EFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHL--LQAWKQGYTGFPIIDAAMRQLNTI 346 EF HLM +P + + P + W D ++AW+Q TG P++DA +RQ+ Sbjct: 281 EFAYHLMYHWPHLLTDN-WKPEWDTFPWGTDPDTPEIRAWRQARTGIPLVDAGLRQMYVT 339 Query: 347 GWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYF 406 G MHNR RMI AS+L K L+ W++G ++F L D D A+N GWQW A +G D+ PYF Sbjct: 340 GRMHNRARMIVASYLTKHLMTHWKLGADWFADCLTDWDPAANAMGWQWVAGSGPDAAPYF 399 Query: 407 RIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHA-----PHSW-LDKNDLSLNYPLPI 460 RIFNP Q RFDP +IR W+ E P A P SW L +D YP P+ Sbjct: 400 RIFNPQTQRVRFDPDEGYIRRWIAEGQARPEATALAYFDAIPRSWGLSPDD---PYPEPV 456 Query: 461 VDHKKACHHTLNQYYAAKK 479 V K+ L + + KK Sbjct: 457 VGLKQGRTRALRAFESRKK 475 >gi|124514880|gb|EAY56391.1| Deoxyribodipyrimidine photolyase [Leptospirillum rubarum] Length = 536 Score = 224 bits (572), Expect = 2e-56, Method: Compositional matrix adjust. Identities = 154/475 (32%), Positives = 236/475 (49%), Gaps = 35/475 (7%) Query: 4 TTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQS-HFIY 62 + A +VW RN+LR++DN L A ++ VFI P + G S + H+ Sbjct: 58 SEAFISSIVWFRNNLRLSDNPPLREAAER--GPLLPVFIGEPSR----GASPEGARHWWR 111 Query: 63 A-SLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDK 121 A SL + SLS+ G + + D L + ++ K+ + + R Sbjct: 112 ARSLRCLDHSLSRLGAPLLFLRG----DPAILLPDLATRLKIDKILAMEAIDPDGRRTQS 167 Query: 122 LLEKRLQHR-VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVP 180 L+ L + V F L+PP + +KV+TPF + +L Sbjct: 168 RLQSALSGKPVEFHLFPADYLVPPAGLPAERRSPWKVFTPFWQRAQSHLPPPLPLPA--- 224 Query: 181 AIRLTG-PVTPSNIPRFFDYPFQAID------PMFPIGEQNALHILRKFCKEKVYYYVEQ 233 RL G P S P + + + D + GE+ A L F ++++ Y + Sbjct: 225 PDRLDGIPFPRSETPEDWGWEPEKPDWAAEMRSFWDPGEEGARRRLNAFLEKRLKNYAVK 284 Query: 234 RDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRH 293 RD +S LSP+L+ G +S R W ++E P+ +L+EL WREF H Sbjct: 285 RDFLDEDTSSLLSPHLANGEISIRSVWWSIRES-----TAPEEDRAKFLSELGWREFSAH 339 Query: 294 LMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRL 353 LM +P + +P +I W +D L AW++G TG P++DA MRQL +G++ NR+ Sbjct: 340 LMWHHPDLAT-QPLQKGRPEIAWREDPSSLLAWQKGRTGIPLVDAGMRQLRRLGFLPNRV 398 Query: 354 RMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTI 413 RM+ SFLVK+LL+DWR G E+F L+D D A+N WQW + G D+ P+FRIFNP + Sbjct: 399 RMVAGSFLVKNLLIDWRKGREWFSDNLVDHDPANNAASWQWISGYGADAAPWFRIFNPVL 458 Query: 414 QGKRFDPQGTFIRHWLPELNNVPTQYIH----APHSWLDKNDLSLNYPL--PIVD 462 QG++FDP+G +++ +LPEL +P +Y+H AP S LD + + P PIVD Sbjct: 459 QGEKFDPEGRYVKTYLPELARIPPRYLHCPWTAPSSLLDNAGIGKDSPYRNPIVD 513 >gi|319785752|ref|YP_004145227.1| DNA photolyase FAD-binding protein [Pseudoxanthomonas suwonensis 11-1] gi|317464264|gb|ADV25996.1| DNA photolyase FAD-binding protein [Pseudoxanthomonas suwonensis 11-1] Length = 476 Score = 224 bits (571), Expect = 2e-56, Method: Compositional matrix adjust. Identities = 162/453 (35%), Positives = 222/453 (49%), Gaps = 35/453 (7%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M V LVW R+DLR+ D+ AL AA V V+I P++ A + SL Sbjct: 1 MGVALVWFRDDLRLDDHPALRAALDRGLVPV-PVYIHAPDEEGAWAPGAASDAWRRRSLA 59 Query: 67 QVQKSLSQKGI-VFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125 + ++L+Q+G + H S + L + + +NR+YE + RD +++ Sbjct: 60 ALAEALAQRGSRLLMLHGPS-----LGTLQALAALTGAEAVLWNRRYEPHIEARDTRIKR 114 Query: 126 RL-QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL 184 +L Q + +SF+ S+L P I Y+V+TPF K L Q LR L + RL Sbjct: 115 QLRQAGLHAESFNGSLLFEPWEIETKQGDPYRVFTPFWK---NALAQWRLRPLWEASARL 171 Query: 185 TGP-------------VTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYV 231 P + P P D+ D P GE A L+ F + Y Sbjct: 172 PSPDQAGAPDGRHLDAIVPETRP---DWDAGFWDEATP-GEAGARARLQAFLAHGLEGYA 227 Query: 232 EQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFY 291 + RD A+ GTS+LS +L G +S ++ + P F L EL WREF Sbjct: 228 QARDRMAVDGTSRLSAHLHFGEVSVQRV---AAAVLAAEVPAPDRERF--LAELGWREFA 282 Query: 292 RHLMAFYPSVCMGKPFIPWTEKIEWNKD-SHLLQAWKQGYTGFPIIDAAMRQLNTIGWMH 350 H+M YP V + + P W + L AW++G TG PIIDA MRQL GWMH Sbjct: 283 HHVMHHYPHV-VDQDLDPRMADFRWARPLRTTLDAWERGRTGVPIIDAGMRQLWQTGWMH 341 Query: 351 NRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFN 410 NR+RMI AS++ K L + WR G +F L+D DLA+N GWQWAA TG D+ PYFR+FN Sbjct: 342 NRVRMIVASWVTKHLRLHWRHGARWFWDTLVDADLANNTQGWQWAAGTGADAAPYFRVFN 401 Query: 411 PTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAP 443 P Q +FDPQG +I WLPEL +P AP Sbjct: 402 PVSQAMKFDPQGEYIARWLPELAALPLPARFAP 434 >gi|302864753|ref|YP_003833390.1| deoxyribodipyrimidine photo-lyase [Micromonospora aurantiaca ATCC 27029] gi|302567612|gb|ADL43814.1| Deoxyribodipyrimidine photo-lyase [Micromonospora aurantiaca ATCC 27029] Length = 440 Score = 224 bits (571), Expect = 2e-56, Method: Compositional matrix adjust. Identities = 142/455 (31%), Positives = 230/455 (50%), Gaps = 37/455 (8%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 +V DLR+ D+ AL AAC D +V+ +++ P + +S ++ F++ SL +++ Sbjct: 7 VVLFTRDLRVHDHPALAAACSAFD-RVVPLYVLDPALQK---LSPNRTRFLHQSLADLRE 62 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEV--RRDKLLEKRL- 127 +L ++G + ++++ L ++V +++ RR++ L Sbjct: 63 ALRKRGGDLVIRRGDPVAETVK------LARKVGAEGVGLSADVSRYAHRRERRLRAECD 116 Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187 +HR+ + F ++ PG++ Y+V++P+ +A Q + D + P +RL Sbjct: 117 RHRMFLRLFPGLTIVEPGALRPGGGDHYRVFSPYFRAW-QGVRWRDELAAPK-RVRLPDG 174 Query: 188 VTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSP 247 V P +P P + P +G + + Y + D A TS+LSP Sbjct: 175 VDPGRLPD----PPKGDSPDAAVGGETVARRRLTAWLPTLDRYDDIHDDMAGDETSRLSP 230 Query: 248 YLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPF 307 YL G +SP NR + + G F + +L WR+FY ++A +P + Sbjct: 231 YLRFGCVSPLAVANRAGD---------RDGPF--VRQLCWRDFYHQVVAGFPDLST---- 275 Query: 308 IPWTE--KIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365 + + + +W D H AW +G TG PI+DA MRQL GWMHNR R+ITA +L K L Sbjct: 276 VAYRRGAREDWRDDPHAFDAWAEGRTGMPIVDAGMRQLRAEGWMHNRARLITAGYLTKHL 335 Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425 +DWR G E F LLDGD +N+G WQW A TGND+ PY R FNP Q +R+DP G ++ Sbjct: 336 GLDWRPGLEIFFRWLLDGDRVNNSGNWQWVAGTGNDTRPY-RGFNPVRQAERYDPDGAYV 394 Query: 426 RHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPI 460 R W+PEL +V + +H P D+ +L+YP P+ Sbjct: 395 RRWVPELASVAGKAVHQPWRLPDEVRHTLDYPPPL 429 >gi|302541523|ref|ZP_07293865.1| deoxyribodipyrimidine photolyase [Streptomyces hygroscopicus ATCC 53653] gi|302459141|gb|EFL22234.1| deoxyribodipyrimidine photolyase [Streptomyces himastatinicus ATCC 53653] Length = 445 Score = 224 bits (571), Expect = 2e-56, Method: Compositional matrix adjust. Identities = 145/481 (30%), Positives = 227/481 (47%), Gaps = 56/481 (11%) Query: 1 MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHF 60 M + S + +DLR+ DN L+AA +D +V+ +F+ + F Sbjct: 1 MTPPSKPSTSIAVFTSDLRLRDNPVLHAALRAAD-RVVPLFVVDRRVAAAGFAVPNRVAF 59 Query: 61 IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120 + L + L ++G D++E + Q ++ RR+ Sbjct: 60 LRDCLADLDAGLRERGGRLIVRTG----DAVEEIRRVAEQVDAGEVHIAGGVSAFAGRRE 115 Query: 121 KLLEKRLQ-----HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNL------ 169 L + L H + + + PG++ + V+TP+ +A Q + Sbjct: 116 ARLREALGGALRVHGAVLTAAE------PGTVTPSGKDHFAVFTPYFRAW-QGVELRRPF 168 Query: 170 -------VQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFP-IGEQNALHILRK 221 V +RS P+ A+ L G +PS P P GE+ L Sbjct: 169 AAPRGVRVPPGVRSEPLSALSLLGSGSPS--------------PGLPEGGERAGRRRLDA 214 Query: 222 FCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSW 281 + + + Y +++D A TS+LSPYL G LSP + +R ++ GA ++ Sbjct: 215 WLRSGLGAYADRQDDLAGDATSRLSPYLHFGCLSPVELVHRARKSG-------GPGADAF 267 Query: 282 LNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMR 341 + +L WR+F+ ++A P + P ++ W D + AWK G TG+PI+DA MR Sbjct: 268 VRQLAWRDFHHQVLAARPDASHTD-YRPRGDR--WRSDDAAVAAWKAGRTGYPIVDAGMR 324 Query: 342 QLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGND 401 QL GWMHNR R++ ASFL K L VDWR+G +F+ L+DGD+A+N WQW A TG D Sbjct: 325 QLAAEGWMHNRARLLVASFLTKTLYVDWRVGARHFLDLLVDGDVANNQLNWQWVAGTGTD 384 Query: 402 SVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIV 461 + P R+ NP Q +RFDP GT++R W+PEL ++P + +H P + D +L YP PIV Sbjct: 385 TRPN-RVLNPLAQARRFDPDGTYVRRWIPELADLPGRQVHTPWTLPDPERTALPYPPPIV 443 Query: 462 D 462 D Sbjct: 444 D 444 >gi|256374682|ref|YP_003098342.1| deoxyribodipyrimidine photo-lyase [Actinosynnema mirum DSM 43827] gi|255918985|gb|ACU34496.1| Deoxyribodipyrimidine photo-lyase [Actinosynnema mirum DSM 43827] Length = 421 Score = 224 bits (571), Expect = 3e-56, Method: Compositional matrix adjust. Identities = 151/476 (31%), Positives = 236/476 (49%), Gaps = 62/476 (13%) Query: 8 SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67 S +VW R DLR+ D+ AL A + + +A+F+ P+ R G ++ F++ L Sbjct: 3 SSTVVWFRRDLRVEDHPALLEAADRA-DRALALFVLDPKLLRPSGKP--RTDFLHRCLKS 59 Query: 68 VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127 + L + +V + D +E + + + + + RRD+ + + + Sbjct: 60 LDDRLGGRLMVVE-------GDPVEVVPAVAREIGAETVHVSADTGPYGRRRDEAVGEEV 112 Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQ--ADLRSLPVPAIRLT 185 + + + PG + Y+V+TPF +A + + AD + V I+ Sbjct: 113 ELVEAGSPY----AVKPGRVRKADGTPYRVFTPFYRAWADHGWRRPADTDASTVDWIKPP 168 Query: 186 GPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245 S PR P + + +F E++ Y RDIP + GTS+ Sbjct: 169 R----STRPRAKALP-------------DVAELWERFRDERLPDYHRTRDIPGVDGTSRF 211 Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVC--- 302 S +L GV+ PR + L ++ G+ + +EL WREFY ++ +P+ Sbjct: 212 SAFLRWGVVHPRTLLDDLGQD---------EGSKVFRSELAWREFYADVLWHHPASARHN 262 Query: 303 MGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLV 362 + + F ++IE ++D AW+QG TG+PI+DA MRQL GWMHNR+RMITASFLV Sbjct: 263 LDRRF----DRIELDEDRDHFDAWRQGRTGYPIVDAGMRQLLEEGWMHNRVRMITASFLV 318 Query: 363 KDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQG 422 KDL + W G +FM L+DGDLASN WQWAA +G D+ PYFR+FNP QG++FDP+G Sbjct: 319 KDLHLPWWWGARHFMEHLVDGDLASNQHNWQWAAGSGTDAAPYFRVFNPITQGQKFDPKG 378 Query: 423 TFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478 +IR ++PEL +V + +H P PIVDH L+++ A K Sbjct: 379 DYIRRYVPELRDVAGKAVHQPRD-------------PIVDHAHERQVALDRFAAIK 421 >gi|302548942|ref|ZP_07301284.1| deoxyribodipyrimidine photolyase [Streptomyces viridochromogenes DSM 40736] gi|302466560|gb|EFL29653.1| deoxyribodipyrimidine photolyase [Streptomyces viridochromogenes DSM 40736] Length = 458 Score = 224 bits (570), Expect = 3e-56, Method: Compositional matrix adjust. Identities = 147/465 (31%), Positives = 228/465 (49%), Gaps = 34/465 (7%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M V +V +DLR+ D+ L AA +S V+ +F+ + + F+ L Sbjct: 1 MHVSVVLFTSDLRLRDHPPLRAAL-DSAGTVVPLFVRDRAVTEAGFAAPNRGAFLADCLT 59 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 + SL ++G CS D +E + + ++ + RR+ L + Sbjct: 60 DLDSSLRERGGRLVV--CSG--DLVEEVCRVVTEADADEVHMAAAHSRFATRREDALRRA 115 Query: 127 LQ--HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRK----ALIQNLVQADLRSLPVP 180 L+ R + +V +PPG + + V+TP+ + A ++++V A R +PVP Sbjct: 116 LEADGRRLFVHDAVTVAVPPGEVTPSGSDHFAVFTPYHRQWAQARLRDVVAAP-RRVPVP 174 Query: 181 AIRLTGPVTPSNIPRFFDYPFQAIDPMFPIG-EQNALHILRKFCKEKVYYYVEQRDIPAI 239 V +P D P I P P G E + + + + Y + RD A Sbjct: 175 EH-----VKGEPLPARDDVP--GISPALPAGGESEGRKRVTAYWRRGLGAYDDTRDDLAA 227 Query: 240 QGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYP 299 TS+LS +L G LSP + +R + GA + + +L WR+F+R ++A P Sbjct: 228 DSTSRLSAHLHFGTLSPVELIHRARRHG-------GPGAEALVRQLAWRDFHRQVLAARP 280 Query: 300 SVCMGKPFIPWTEKIEWNKDSHL---LQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMI 356 T++ W + ++AW+QG TG+P+IDAAMRQL GWMHNR R++ Sbjct: 281 DAAHTDYR---TQRDRWRTERTAGDDIEAWRQGRTGYPVIDAAMRQLRHEGWMHNRARLL 337 Query: 357 TASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGK 416 TASFL K L VDWRIG +F+ L+DGD+A+N WQW A TG D+ P R+ NP Q K Sbjct: 338 TASFLTKTLYVDWRIGAAHFLHWLVDGDVANNQLNWQWMAGTGTDTRPN-RVLNPVTQAK 396 Query: 417 RFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIV 461 R+DP GT++R W+PEL + +H P + +L+YP P+V Sbjct: 397 RYDPDGTYVRRWVPELAGLDAPAVHEPWKLPGLDRAALDYPDPVV 441 >gi|196476809|gb|ACG76268.1| deoxyribodipyrimidine photolyase [Amblyomma americanum] Length = 147 Score = 224 bits (570), Expect = 3e-56, Method: Composition-based stats. Identities = 101/145 (69%), Positives = 119/145 (82%) Query: 335 IIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQW 394 I+DAAMRQLN+ GWMHNRLRMITASFLVKDLL+DWR GE YFMSQL+DGDLA+NNGGWQW Sbjct: 1 IVDAAMRQLNSTGWMHNRLRMITASFLVKDLLIDWREGERYFMSQLIDGDLAANNGGWQW 60 Query: 395 AASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSL 454 AASTG D+ PYFRIFNPT QG++FD +G FIR WLPEL +VP + +H P W K ++L Sbjct: 61 AASTGTDAAPYFRIFNPTTQGEKFDHEGEFIRQWLPELRDVPGKVVHEPWKWAQKAGVTL 120 Query: 455 NYPLPIVDHKKACHHTLNQYYAAKK 479 +YP PIV+HK+A TL Y AA+K Sbjct: 121 DYPQPIVEHKEARVQTLAAYEAARK 145 >gi|240169571|ref|ZP_04748230.1| Phr protein [Mycobacterium kansasii ATCC 12478] Length = 444 Score = 223 bits (569), Expect = 4e-56, Method: Compositional matrix adjust. Identities = 159/490 (32%), Positives = 231/490 (47%), Gaps = 64/490 (13%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M+ L+W R DLR+ D+ AL AA + +V+A F+ P G R+ ++ SL Sbjct: 1 MARALLWFRRDLRLRDHPALAAAAADD--EVLACFVLDPRLEASSG--RRRLQYLGDSLR 56 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 Q++ L + +V + E + + + + + + RRD+ + Sbjct: 57 QLRSDLGGRLLVTRGR-------PEERIARIAKEIEASTVHISEDFAPFGRRRDERVRAA 109 Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 L V + S LL PG + Y+V+TPF + + L P+ TG Sbjct: 110 LGS-VPLVATGSSYLLSPGRVAKDDGTPYRVFTPFFRRWSE---------LGWPSPARTG 159 Query: 187 P-----VTPSNIP-RFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ 240 + P+ +P + P + GE AL F + + Y + RD P + Sbjct: 160 RDCARWLDPAQVPVEHCEIPDPGVPLDLAAGEAAALREWGAFVDDGLERYAQDRDRPDLD 219 Query: 241 GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPS 300 GTS++S +L G + PR V L +GA S+L EL +R+FY ++ +P+ Sbjct: 220 GTSRMSAHLRFGTIHPRT--------MVAALDFSGAGARSYLRELAFRDFYAAVLYDHPA 271 Query: 301 VCMGKPFIPWTEKIEWNKD------------SHLLQAWKQGYTGFPIIDAAMRQLNTIGW 348 W WN D HL +AWK G TGFP+IDA MRQL G+ Sbjct: 272 SA-------WR---NWNSDYDRIRTDTGSRAEHLFEAWKAGETGFPLIDAGMRQLRQTGF 321 Query: 349 MHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRI 408 MHNR+RMI ASFLVKDL + W+ G +F+ QL DGD+ASN GWQW A G D+ PYFR+ Sbjct: 322 MHNRVRMIAASFLVKDLHLPWQWGAAWFLDQLTDGDVASNQHGWQWCAGCGTDAAPYFRV 381 Query: 409 FNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACH 468 FNPT QG++FDP G +IR W+PEL+ ++ YP PIVDH Sbjct: 382 FNPTTQGQKFDPSGDYIRRWVPELSAATDAHLRT-------GKRPSGYPPPIVDHGTERA 434 Query: 469 HTLNQYYAAK 478 L +Y + Sbjct: 435 EALRRYRGMR 444 >gi|86132772|ref|ZP_01051364.1| deoxyribodipyrimidine photo-lyase, class I [Dokdonia donghaensis MED134] gi|85816726|gb|EAQ37912.1| deoxyribodipyrimidine photo-lyase, class I [Dokdonia donghaensis MED134] Length = 436 Score = 223 bits (569), Expect = 4e-56, Method: Compositional matrix adjust. Identities = 154/479 (32%), Positives = 220/479 (45%), Gaps = 52/479 (10%) Query: 5 TAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYAS 64 + V + W R DLR+ DN A D V+ +FI E + + FIY Sbjct: 2 STKKVTIFWFRRDLRLDDNVGFLEAL-KGDYPVLPIFIFDKEILDKLPEDDARVTFIYNE 60 Query: 65 LLQVQKSLSQK---GIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDK 121 L +++ +L + + Y E + Y +Q +T NR YE + RDK Sbjct: 61 LQKMRDTLQAEHDSSLAMFYSTPEQI--FKELIADYDVQAVIT----NRDYEPYALERDK 114 Query: 122 LLEKRLQHRVIC-KSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVP 180 + L+ I +F D V+ I+ Y VYTPF+ + + Sbjct: 115 KIASLLEENDISFTTFKDQVIFEKDEIVKGDGDPYVVYTPFKNKWKATFDEDKDLIIHYT 174 Query: 181 AIRLTGPVTPSNIPR--FFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPA 238 + L + S +P D F+ P + I Y + R+ PA Sbjct: 175 SQYLDNLIDHSRLPNVTLVDMGFKKSSIEVPDYDVTPTLIEN---------YEDTRNFPA 225 Query: 239 IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFY 298 GTS+L P+L G +S R+ V I + F W +ELIWREF+ ++ + Sbjct: 226 QDGTSRLGPHLRFGTVSVRKM--------VKKAIAQTNEVF-W-SELIWREFFMQILYHF 275 Query: 299 PSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITA 358 P K F ++I+W + + WK G TG+ ++DA MR+LN G+MHNR+RM+TA Sbjct: 276 PH-TKDKAFRSKYDRIDWRNNEEEFEKWKNGQTGYALVDAGMRELNATGYMHNRVRMLTA 334 Query: 359 SFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRF 418 SFL K LL+DWR GE YF +LLD D++SN G WQWAA +G D+ PYFRIFNP Q +F Sbjct: 335 SFLCKHLLIDWRWGETYFAEKLLDYDMSSNVGNWQWAAGSGVDAAPYFRIFNPMTQVDKF 394 Query: 419 DPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477 D Q +I W+PEL L+YP +VDHK+A L Y A Sbjct: 395 DKQKEYINKWVPELQ-------------------ELSYPDKMVDHKEARERCLKTYKEA 434 >gi|209884870|ref|YP_002288727.1| deoxyribodipyrimidine photo-lyase [Oligotropha carboxidovorans OM5] gi|209873066|gb|ACI92862.1| deoxyribodipyrimidine photo-lyase [Oligotropha carboxidovorans OM5] Length = 487 Score = 223 bits (569), Expect = 5e-56, Method: Compositional matrix adjust. Identities = 175/518 (33%), Positives = 244/518 (47%), Gaps = 88/518 (16%) Query: 4 TTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFI--ATPEQWRQHGISARQSHFI 61 +A SV +VW RNDLR++D+ AL AA A +I +FI Q + + A ++ Sbjct: 6 ASASSV-IVWFRNDLRLSDHAALAAAAGTG-APLICLFILDEAAAQSARRPLGAAAKWWL 63 Query: 62 YASLLQVQKSLSQKG------------IVFQYHQCSNFDDSIEWLDS------YCLQQRV 103 SL + + L ++G I+ Q Q + ++ WLDS C +Q + Sbjct: 64 ANSLRTLDRELRKRGQRLILRRGDTATILVQIAQEAKAK-AVFWLDSEIPAEAACARQVI 122 Query: 104 TKLFYNRQYEINEVRRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRK 163 T L + E + R D +L P I N +V+TPF K Sbjct: 123 TAL-HEIGVETHISRSD-------------------LLASPSMIRNKEGHGLRVFTPFWK 162 Query: 164 ALIQNLVQADLRSL-----PVPAIRLTGPVTPS-NIPRFFDYPFQAIDP--------MFP 209 +R+L P+PA++ P S D+ + + P + Sbjct: 163 ---------RVRALGDPPPPLPAMKKLPPSVASVESESIEDWQLEPLHPDWAGGLRARWK 213 Query: 210 IGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVD 269 GE A L F + + Y RD A TS LS +L G +SPRQ ++ + Sbjct: 214 PGEAGARKKLDAFLDDAIDGYASGRDDLARDQTSHLSAHLRFGEISPRQVFHATR----- 268 Query: 270 LLIKPKSGAFS-----WLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQ 324 + A S +L+EL WREF RHL+ P + + P + W D L Sbjct: 269 -FAAAHNPALSHDVEKFLSELGWREFCRHLLFDQPDLHR-QDLQPSFDNFPWRTDRAALS 326 Query: 325 AWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGD 384 AW+QG TG+PI+DA MR+L G MHNR+RM+ ASFLVK LL+DWR GE +F L+D D Sbjct: 327 AWQQGRTGYPIVDAGMRELWHTGTMHNRVRMVAASFLVKHLLIDWREGERWFWDTLVDAD 386 Query: 385 LASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPH 444 SN G WQW A G D+ PYFRIFNP +QG++FDP G ++ W+PEL +P + IH P Sbjct: 387 PGSNPGNWQWVAGCGADAAPYFRIFNPVLQGEKFDPDGAYVMKWVPELAKLPPKLIHQP- 445 Query: 445 SW------LDKNDLSLN--YPLPIVDHKKACHHTLNQY 474 W L ++L YP PIVDHK A L Y Sbjct: 446 -WEATPMELAAAGITLGKTYPAPIVDHKAARERALAAY 482 >gi|88802270|ref|ZP_01117797.1| deoxyribodipyrimidine photolyase-class I [Polaribacter irgensii 23-P] gi|88781128|gb|EAR12306.1| deoxyribodipyrimidine photolyase-class I [Polaribacter irgensii 23-P] Length = 434 Score = 223 bits (568), Expect = 5e-56, Method: Compositional matrix adjust. Identities = 151/476 (31%), Positives = 224/476 (47%), Gaps = 53/476 (11%) Query: 8 SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67 +V++ W R DLR+ DN Y A S+ V+ +FI + + + +FIY +L Sbjct: 4 AVNIFWFRRDLRLDDNVGFYNAL-KSEHPVLPIFIFDEDILDKLQKEDARLNFIYDTLQD 62 Query: 68 VQKSLSQK---GIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLE 124 ++ L +K I + S + + + +F NR YE RD ++ Sbjct: 63 MRAILEKKHGSSIAMLHGNPSAI------FEKLISEYSIHTVFTNRDYEPYATERDNKIQ 116 Query: 125 KRLQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIR 183 L I +F D V+ ++ YKVYTPF K + +L + Sbjct: 117 ALLSSNGIHFDTFKDQVIFEKNEVVKKDGLPYKVYTPFMKVWKEQFKTYNLDFYYTSSF- 175 Query: 184 LTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRK--FCKEKVYYYVEQRDIPAIQG 241 L + + +P + IG + A ++K + + Y E R+ PA+ Sbjct: 176 LENLIQNTELPNLH---------LSDIGFEVAKQKIKKHTVTPKLIQTYEETRNFPALDS 226 Query: 242 TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSV 301 TS+L P+L G +S R+ ++ I K+ F W ELIWREF+ ++ +P Sbjct: 227 TSRLGPHLRFGTVSVRKM--------MEKAISEKNEIF-W-QELIWREFFMQILWHFPYT 276 Query: 302 CMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFL 361 F P ++IEW + W QG TG+P++DA MRQLN G+MHNR+RM+ SFL Sbjct: 277 SKN-SFKPKYDRIEWRNNEAEFNKWCQGETGYPLVDAGMRQLNETGFMHNRIRMLVGSFL 335 Query: 362 VKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQ 421 K LL+DWR GE YF +L D ++ASN G WQW A +G D+ PYFRIFNPT Q K+FD Sbjct: 336 CKHLLIDWRWGEAYFAKKLHDYEMASNVGNWQWVAGSGVDAAPYFRIFNPTTQIKKFDKD 395 Query: 422 GTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477 +I+ W+P N L Y +VDHK+A L+ Y A Sbjct: 396 LAYIKKWVP-------------------NFQELTYAKEMVDHKEARERCLSTYKEA 432 >gi|319954856|ref|YP_004166123.1| deoxyribodipyrimidine photo-lyase [Cellulophaga algicola DSM 14237] gi|319423516|gb|ADV50625.1| Deoxyribodipyrimidine photo-lyase [Cellulophaga algicola DSM 14237] Length = 436 Score = 223 bits (567), Expect = 7e-56, Method: Compositional matrix adjust. Identities = 155/478 (32%), Positives = 222/478 (46%), Gaps = 57/478 (11%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 + + W R DLR+ DN LY A D V+ +FI E + FI+ L + Sbjct: 5 ISIFWFRRDLRLEDNVGLYQAL-KGDYPVLPIFIFDKEILENLPKDDARVSFIFEQLESM 63 Query: 69 QKSLSQK--GIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 + +L ++ + YH E S V ++ N YE RD ++ Sbjct: 64 RNTLQEEVESSLAIYHGTPQ-----EIFKSLIKDYEVQAVYTNHDYEPYATERDTKIQDY 118 Query: 127 LQHR-VICKSFDDSVLLPPGSILNHALQMYKVYTPFR---KALIQNLVQADLRSLPVPAI 182 L+ + V S+ D V+ G +L Y VYTP++ K + + DL + Sbjct: 119 LKDKQVDFHSYKDQVIFEKGDVLKDDGDPYVVYTPYKNKWKTIFD--AKKDLETYNTKKY 176 Query: 183 RLTGPVTPSNIPRFF--DYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ 240 + S +P D F+ P + I Y + R+ PAI+ Sbjct: 177 -FKNFIAHSRLPNLSLSDMGFETSKIKVPNYSAGSKVIQN---------YEDTRNYPAIE 226 Query: 241 -GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYP 299 GTS+L P+L G +S R+ R I K+ F W +ELIWREF+ ++ +P Sbjct: 227 NGTSRLGPHLRFGSVSIREITKRA--------IAEKNEVF-W-SELIWREFFMQILWHFP 276 Query: 300 SVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITAS 359 F P ++IEW + + WK G TG+ ++DA MR+LNT G+MHNR+RM+ AS Sbjct: 277 HTTKN-AFRPKYDRIEWRNNEAEFEKWKNGETGYALVDAGMRELNTTGYMHNRVRMLVAS 335 Query: 360 FLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFD 419 FL K LL+DWR GE YF +LLD DL++N G WQWAA +G D+ PYFRIFNP Q +FD Sbjct: 336 FLCKHLLIDWRWGEAYFAEKLLDFDLSANVGNWQWAAGSGVDAAPYFRIFNPMTQVDKFD 395 Query: 420 PQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477 Q +I W+ +L L+YP +VDHK A L Y A Sbjct: 396 KQKEYINTWVSDLQ-------------------ELSYPDKMVDHKMARERCLKTYKEA 434 >gi|306835185|ref|ZP_07468221.1| possible deoxyribodipyrimidine photo-lyase [Corynebacterium accolens ATCC 49726] gi|304568940|gb|EFM44469.1| possible deoxyribodipyrimidine photo-lyase [Corynebacterium accolens ATCC 49726] Length = 445 Score = 222 bits (566), Expect = 9e-56, Method: Compositional matrix adjust. Identities = 149/447 (33%), Positives = 221/447 (49%), Gaps = 44/447 (9%) Query: 9 VHLVWLRNDLRITDNKALYAAC------HNSDAKVIAVFIATPEQWRQHGISARQSHFIY 62 L+W R+DLR++DN+AL A + S +++AV + P + + Sbjct: 2 TSLMWFRDDLRLSDNQALTRAAEAATDKNGSKPELVAVVLDEPAYPSTRPLGGATHWWRE 61 Query: 63 ASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYE--INEV--R 118 SL + + L+ +G+ D+ + S + + +NR+Y + EV R Sbjct: 62 RSLHALAQELASRGVKL----LRATGDARTVIPSIAHEVGADTVTWNRRYHGPLREVDAR 117 Query: 119 RDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLP 178 L + + C F L+ P + N YKV+TPF A L AD LP Sbjct: 118 VKATLADAGINAISCPGF---TLVEPWEVTNAQGNPYKVFTPFAAAARSQL--ADEEPLP 172 Query: 179 VP---AIRLTGPVTPSNIPR-FFDYP--FQAIDPMFPIGEQNALHILRKFCKEKVYYYVE 232 VP A R G S+ P D P ++ + GE A L + + +Y E Sbjct: 173 VPELLAGREMGASASSSWPNPSADEPQWAASLAQYWTPGEAGARERLGQL---DLAHYAE 229 Query: 233 QRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYR 292 +RDIPA TS LSP+L G +SPR+ W EE P + F +EL+WR+F Sbjct: 230 ERDIPARNATSLLSPHLRFGEVSPREVWVAAAEE-------PDAEKFQ--SELLWRDFAW 280 Query: 293 HLMAFYPSVC---MGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWM 349 H + P + + + F + +W+ + L+ W++G TG P++DA MR+L G+M Sbjct: 281 HRLYHLPDLATRNVRQKF----NRFDWSWNDPRLKDWQEGTTGIPLVDAGMRELWHTGYM 336 Query: 350 HNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIF 409 HNR+RM+ SFL K+L + WR+GEE+F L+D D ASN WQW A G+D+ P+FRIF Sbjct: 337 HNRVRMVVGSFLTKNLGIHWRLGEEWFWDTLVDADAASNPFNWQWVAGCGDDAAPFFRIF 396 Query: 410 NPTIQGKRFDPQGTFIRHWLPELNNVP 436 NP Q +RFDP G +IR W P L+ P Sbjct: 397 NPETQAQRFDPDGAYIRQWAPTLSAPP 423 >gi|254450032|ref|ZP_05063469.1| deoxyribodipyrimidine photolyase [Octadecabacter antarcticus 238] gi|198264438|gb|EDY88708.1| deoxyribodipyrimidine photolyase [Octadecabacter antarcticus 238] Length = 469 Score = 222 bits (566), Expect = 9e-56, Method: Compositional matrix adjust. Identities = 160/486 (32%), Positives = 230/486 (47%), Gaps = 48/486 (9%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV-Q 69 + W+R D RI DN AL AAC S VIA+FI E HG + + F ++V Sbjct: 5 IYWVRRDFRIGDNAALSAAC-ASGRPVIALFICD-EVVEGHGAAPK---FRLGEGVRVFG 59 Query: 70 KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH 129 +L++ G + D++ L +Q V +++NR Y+ RD ++ L+ Sbjct: 60 AALAEAGSRLILRR----GDALAVLRELVVQTGVQAIYWNRLYDPASKARDTGVKAALKD 115 Query: 130 RVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLR---SLPVPAI--- 182 I SF +L P ++ Y+V+TP K + V + S+PVP + Sbjct: 116 DGIEVASFAGHLLFEPWTVETKTGGFYRVFTPLWKTVRGREVATPIAAPASVPVPDVWPA 175 Query: 183 -------RLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRD 235 +L G + + +GE+ A L F E+V Y RD Sbjct: 176 SDQLDDWKLGGAMRRGR---------DVLAAHICVGEEAARSRLDTFIDERVQSYQTNRD 226 Query: 236 IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLM 295 +P++ GTS+LS L+ G +SP CW+ + K A + EL+WREF HL+ Sbjct: 227 MPSVDGTSRLSENLTYGEISPAVCWHAGWAA----IHSGKGQAEVFCKELVWREFAYHLV 282 Query: 296 AFYPSVCMGKPFIPWTEKIEWNKD-SHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLR 354 P + W + WN D + + AWKQG TG P +DAAMR++ G MHNR R Sbjct: 283 HHTPHIVDRNWKEGW-DAFPWNTDDTAEVMAWKQGRTGVPFVDAAMREMYVSGTMHNRGR 341 Query: 355 MITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQ 414 MI AS+L K L+ W++G+ +F L D D ASN GWQWAA +G D+ PYFR+FNP Q Sbjct: 342 MIVASYLTKHLMTHWKVGQAWFDDCLTDWDPASNAMGWQWAAGSGPDAAPYFRVFNPVTQ 401 Query: 415 GKRFDPQGTFIRHWLPELN----NVPTQYIHA-PHSW-LDKNDLSLNYPLPIVDHKKACH 468 +FD G + R W+ E + Y A P SW L +D+ YP P+VD Sbjct: 402 LDKFDHAGLYARTWIAEGQGEAPDTALSYFDAIPKSWGLAPSDV---YPAPVVDMATGRQ 458 Query: 469 HTLNQY 474 L Y Sbjct: 459 RALEAY 464 >gi|291443506|ref|ZP_06582896.1| deoxyribodipyrimidine photo-lyase [Streptomyces roseosporus NRRL 15998] gi|291346453|gb|EFE73357.1| deoxyribodipyrimidine photo-lyase [Streptomyces roseosporus NRRL 15998] Length = 456 Score = 222 bits (566), Expect = 9e-56, Method: Compositional matrix adjust. Identities = 145/467 (31%), Positives = 226/467 (48%), Gaps = 32/467 (6%) Query: 8 SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67 SV +V +DLR+ D+ L AA ++D +V+ +F+ R + + F+ L Sbjct: 3 SVAVVLFTSDLRLHDHPVLRAALRDAD-EVVPLFVRDDAVHRAGFDAPNRLAFLADCLAD 61 Query: 68 VQKSLSQKG---IVFQYHQCSNFDDSIE--WLDSYCLQQRVTKLFYNRQYEINEVRRDKL 122 + L +G IV + +E DS + V+ R+ I E Sbjct: 62 LDTGLRDRGGRLIVRRGGTAREVKRVVEQTGADSVHIAAGVSGYAAQREERIREALAGTG 121 Query: 123 LEKRLQHRVICKSFDDSVLLPPGSIL-NHALQMYKVYTPFRKALIQNLVQADLRSLPVP- 180 E R+ V+ L PG ++ + V+TP+ + V+ +L P Sbjct: 122 CELRVHDAVVTA-------LAPGRVVPTGGKDHFAVFTPYFRRWEAEGVRG---TLAAPR 171 Query: 181 AIRLTGPVTPSNIPRFFDYPFQAIDPMFP-IGEQNALHILRKFCKEKVYYYVEQRDIPAI 239 +R+ V+ +P + + P GE+ ++ + + Y + D A Sbjct: 172 TVRVPDGVSGDALPDR--DAVKGVSPGLARGGEEAGRKLVTSWLHGPMAAYEDGHDDLAG 229 Query: 240 QGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYP 299 TS+LSP+L G +S + NR +E K G +++ +L WR+F+ ++A P Sbjct: 230 DATSRLSPHLHFGTVSAAELANRARE-------KGGPGGEAFVRQLAWRDFHHQVLAARP 282 Query: 300 SVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITAS 359 + P ++ W D ++AWK G TG+P++DAAMRQL GWMHNR RM+TAS Sbjct: 283 DASW-SDYRPRHDR--WRSDEDEIEAWKSGRTGYPLVDAAMRQLAHEGWMHNRGRMLTAS 339 Query: 360 FLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFD 419 FL K L VDWR+G +F+ L+DGD+A+N WQW A TG D+ P R+ NP IQGKRFD Sbjct: 340 FLTKTLYVDWRVGARHFLDLLVDGDVANNQLNWQWVAGTGTDTRPN-RVLNPVIQGKRFD 398 Query: 420 PQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKA 466 P G ++R W+PEL V +H P + ++YP P+VD +A Sbjct: 399 PDGAYVRRWVPELAEVEGPAVHEPWKLEGLDRAGVDYPDPVVDLAEA 445 >gi|89891446|ref|ZP_01202951.1| deoxyribodipyrimidine photo-lyase [Flavobacteria bacterium BBFL7] gi|89516220|gb|EAS18882.1| deoxyribodipyrimidine photo-lyase [Flavobacteria bacterium BBFL7] Length = 440 Score = 222 bits (565), Expect = 1e-55, Method: Compositional matrix adjust. Identities = 154/481 (32%), Positives = 228/481 (47%), Gaps = 53/481 (11%) Query: 6 AMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASL 65 + V++ W R D+R+ DN A SD V+ +FI E + FIY L Sbjct: 2 SKKVNIFWFRRDMRLDDNVGFLEALK-SDYPVLPIFIFDKEILDHLPEDDARVTFIYEEL 60 Query: 66 LQVQKSLSQK---GIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD-K 121 +++ +L + + Y + N I +D+Y V +F NR YE RD K Sbjct: 61 QRMRNNLQENHDSSLATFYGKPLNIWQEI--IDNY----EVNAVFTNRDYEPYAQERDLK 114 Query: 122 LLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQ----ADLRSL 177 L + V +F D V+ I+ Y VYTP++ ++N + AD ++ Sbjct: 115 LTSFFNEQNVAFHTFKDQVIYEKDDIVKDDGDPYVVYTPYKNKWLENFRKDYGKADNLTI 174 Query: 178 PVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIP 237 L + S +P I E N L + Y + R+ P Sbjct: 175 HYTNDYLDNCIKNSRLPNLNLSDIGFKKSSIEIPEYNITPTL-------IEDYEKTRNYP 227 Query: 238 AIQ-GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMA 296 A++ GTS+L YL GV+S R+ + DL + ++++ELIWREF+ ++ Sbjct: 228 AMENGTSRLGVYLRFGVVSIRKMMKK-----ADL-----ANEKTFMSELIWREFFMTILY 277 Query: 297 FYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMI 356 +P + F ++IEW + + WK G TG+ I+DA MR+LNT G+MHNR+RM+ Sbjct: 278 HFPH-TVDNAFRSKYDRIEWRNNESEFEKWKNGQTGYAIVDAGMRELNTTGYMHNRVRML 336 Query: 357 TASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGK 416 ASFL K LL+DWR GE YF +LLD DL++N G WQWAA +G D+ PYFRIFNP Q Sbjct: 337 VASFLCKHLLIDWRWGERYFAEKLLDFDLSANVGNWQWAAGSGVDAAPYFRIFNPITQKD 396 Query: 417 RFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYA 476 +FD +I+ W+PE + +Y +VDHK+A L Y Sbjct: 397 KFDKNYKYIKQWVPEFE-------------------TDDYVEKMVDHKEARERCLKTYKE 437 Query: 477 A 477 A Sbjct: 438 A 438 >gi|90415238|ref|ZP_01223172.1| putative photolyase [marine gamma proteobacterium HTCC2207] gi|90332561|gb|EAS47731.1| putative photolyase [marine gamma proteobacterium HTCC2207] Length = 445 Score = 222 bits (565), Expect = 1e-55, Method: Compositional matrix adjust. Identities = 144/444 (32%), Positives = 225/444 (50%), Gaps = 40/444 (9%) Query: 60 FIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRR 119 +++ +L + KSL K +F D++ L +++NR YE + R Sbjct: 21 WLHHALQSLDKSLDGKLNIFS-------GDALAILSELSASMSAKAVYWNRCYEPQSIER 73 Query: 120 DKLLEKRLQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPF-RKALIQNLVQADLRSL 177 D ++ RL+ + +SF+ S+L P +L YKV+TP+ R+ +Q + A + L Sbjct: 74 DANIKTRLKEAGLDVQSFNGSLLWEPWQVLKKDGTPYKVFTPYYRRGCLQKV--APRQPL 131 Query: 178 PVPA----IRLTGPVTPSNIPRF--FDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYV 231 PVP ++ +T ++ D+ + + + I E A L F + Y Sbjct: 132 PVPKTLDLVKADNSLTVEDLSLLPAIDWD-KKLHGDWDISEDGAKDRLDDFVFNGIQDYR 190 Query: 232 EQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFY 291 E R+ P + S+LSPY G +S LI +S ++L+EL WREF Sbjct: 191 EGRNFPNKKNVSRLSPYFHFGQMSVNTA--WYAANDAAALIDNESNLDTFLSELGWREFS 248 Query: 292 RHLMAFYPSVCMGK-----PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTI 346 +L+ +P + PW + N D+ L +AW++G TG+P++DA MR+L Sbjct: 249 YYLLYHFPKLPTDNLQQRFNVFPWAK----NTDAEL-KAWQKGKTGYPLVDAGMRELYGT 303 Query: 347 GWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYF 406 G+MHNR+RM+ SF+VK+LL+ W GE +F L+D DLA+N+ WQW A G D+ P+F Sbjct: 304 GYMHNRVRMVVGSFMVKNLLIHWHSGERWFWDCLVDADLAANSASWQWIAGCGADAAPFF 363 Query: 407 RIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND--------LSLNYPL 458 RIFNP Q ++FD QG +IR +PEL +P +YIHAP WL D + +YP Sbjct: 364 RIFNPITQSEKFDKQGDYIRRHVPELAEMPAKYIHAP--WLAPADVLAAAGVEIGTDYPA 421 Query: 459 PIVDHKKACHHTLNQYYAAKKQSL 482 PI+D K++ L + K L Sbjct: 422 PIIDIKESRERALAAFKMTKNDVL 445 >gi|318042779|ref|ZP_07974735.1| deoxyribodipyrimidine photolyase [Synechococcus sp. CB0101] Length = 510 Score = 222 bits (565), Expect = 1e-55, Method: Compositional matrix adjust. Identities = 174/498 (34%), Positives = 234/498 (46%), Gaps = 55/498 (11%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 L W R DLR+ DN L A + V VF+ P ++ + F+ SL ++Q+ Sbjct: 7 LFWHRRDLRLADNLGLATAAAAT-PAVTGVFVLDPAILGAPDMAPARVWFLLESLRELQQ 65 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130 S + G + D + L + +NR E RD+ + LQ Sbjct: 66 SWREAGSRLFVLE----GDPEQVLPQLAEALAAPVVAWNRDVEPYGRARDRRVAAALQAA 121 Query: 131 VICKSFD-DSVLLPPGSILNHALQMYKVYTPF---------RKALI-------------- 166 D D +L+ P ++ Y+VY PF RKA Sbjct: 122 GRKVLVDWDQLLVAPEALKTGGGDPYRVYGPFLRNWRGQVERKAAAGSALSGGVEPVAAP 181 Query: 167 QNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAID-----PMFPIGEQNALHILRK 221 LV D +LP P L + + + QA D P P GE AL L+ Sbjct: 182 AGLVDLDPEALPEPRSALWAQLPLRDSLPTLEELSQAFDGGDLCPCRP-GEAAALVQLQA 240 Query: 222 FCKEK--------VYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDL--L 271 FC ++ Y R++P GTS LS L G LSPRQ W ++ L Sbjct: 241 FCDGGGASSSRIPLFAYEPGRNMPGEAGTSGLSAALKFGTLSPRQAWAAAQQARQVAEAL 300 Query: 272 IKPKSGAFS---WLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQ 328 + S W EL WREFY+ + +P + G P+ P + W+ +AW + Sbjct: 301 GGAEEAIASIGVWEQELAWREFYQQALFHFPELAEG-PYRPQWRQFPWDNHQGHYEAWCE 359 Query: 329 GYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASN 388 G TG PIIDAAMRQLN GWMHNR RMI AS+LVKDL+ DWR GE FM +L+DGDLA+N Sbjct: 360 GLTGMPIIDAAMRQLNESGWMHNRCRMIVASYLVKDLICDWRWGETAFMQRLVDGDLAAN 419 Query: 389 NGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQ-YIHAPHSWL 447 NGGWQW+AS+G D P RIFNP Q +FDP G +IRHWLPEL +V T+ + + + Sbjct: 420 NGGWQWSASSGMDPKP-LRIFNPATQASKFDPTGAYIRHWLPELRHVNTKDLLSGEIAPM 478 Query: 448 DKNDLSLNYPLPIVDHKK 465 ++ YP +V HKK Sbjct: 479 ERR----GYPAQVVSHKK 492 >gi|118464028|ref|YP_883059.1| Phr protein [Mycobacterium avium 104] gi|118165315|gb|ABK66212.1| Phr protein [Mycobacterium avium 104] Length = 442 Score = 222 bits (565), Expect = 1e-55, Method: Compositional matrix adjust. Identities = 153/474 (32%), Positives = 228/474 (48%), Gaps = 48/474 (10%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 L+W R DLR+ D+ AL AA +SD +V+A F+ P R G R+ F+ SL ++ Sbjct: 4 LLWFRRDLRLHDHPALSAAA-DSD-EVLACFVLDPRLQRSSG--PRRLQFLGDSLRVLRD 59 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130 L + +V + + + + + + + + + RRD + L Sbjct: 60 ELDGRLLVTRGRPDIRIPEIAKAIGA-------SSVHVSEDFTPFGKRRDARVRAALAS- 111 Query: 131 VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP--- 187 V + L+PPG + Y+V+TPF + + ++ A R P Sbjct: 112 VPLVATGSPYLVPPGRVTKPDGSPYQVFTPFLRRWRDTGWRPPAKTGAASA-RWLDPARL 170 Query: 188 -VTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246 +T IP P +D GE A + + F + Y + R P I+GTS++S Sbjct: 171 GITACEIPD----PGATLD--LAAGEAAARNQWKSFVDNGLANYADDRHRPDIEGTSRMS 224 Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP 306 +L G + PR DL ++ +GA ++L EL +R+FY ++ P+ Sbjct: 225 AHLKFGTIHPRTL-------VADLDLR-TAGARAYLRELAFRDFYADVLHHRPASAWRN- 275 Query: 307 FIPWTEKIE------WNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASF 360 W + ++ +AWK G TGFP +DA MRQL G+MHNR+RM ASF Sbjct: 276 ---WNSAFDAIRTDTGDEAGRRFEAWKAGETGFPFVDAGMRQLRQTGFMHNRVRMTVASF 332 Query: 361 LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDP 420 LVKDL + W+ G +F+ QL+DGDLA+N GWQW A G D+ PYFR+FNP QG++FDP Sbjct: 333 LVKDLHLPWQWGAHWFLQQLVDGDLANNQHGWQWCAGCGTDAAPYFRVFNPAAQGEKFDP 392 Query: 421 QGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQY 474 G +IR W+PEL + PH L + YP PIVDH L +Y Sbjct: 393 SGDYIRRWVPEL-----RCADDPH--LRTGERPPGYPAPIVDHATERAEALRRY 439 >gi|83951316|ref|ZP_00960048.1| deoxyribodipyrimidine photolyase [Roseovarius nubinhibens ISM] gi|83836322|gb|EAP75619.1| deoxyribodipyrimidine photolyase [Roseovarius nubinhibens ISM] Length = 473 Score = 221 bits (564), Expect = 1e-55, Method: Compositional matrix adjust. Identities = 157/483 (32%), Positives = 226/483 (46%), Gaps = 52/483 (10%) Query: 21 TDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQKSLSQKG--IV 78 +D+ AL AA VI V I + HG+ A + + + ++L++KG ++ Sbjct: 16 SDHPALRAAVARG-GPVIPVMIRDDQM---HGLGAAPKWRLGLGIEAMGRALAEKGSRLI 71 Query: 79 FQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL-QHRVICKSFD 137 + Q + L + + +++ R Y+ + RD+ +++ L V +S Sbjct: 72 LRSGQAAEV------LSALVEETGAGAVYWTRAYDPESIARDRGVKETLVAAGVEAQSHA 125 Query: 138 DSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPSNIPRFF 197 +L P + YKVYTP+ A+ V A L + PA +T P Sbjct: 126 GHLLFEPWEVETGQGSYYKVYTPYWNAVKSRDVAAPLTA---PA-EITAPAHWPESEDLD 181 Query: 198 DYPFQAID--------PMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYL 249 D+ A P +GE A L F + + Y +RD+P GTS LS L Sbjct: 182 DWALGAAMQRGAAVCLPHQHVGEATAQGRLGAFMAQGIAEYRARRDLPGEAGTSGLSENL 241 Query: 250 SIGVLSPRQCWN---RLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK- 305 S+G +S RQCW+ R ++E +GA +W EL+WREF HL+ P + G Sbjct: 242 SLGEISIRQCWHAAMRARQEGA-------AGAETWAKELVWREFAYHLIYHTPRLASGNW 294 Query: 306 ----PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFL 361 PW E DS + AWKQG TG +DAAMR++ G MHNR RM+ AS+L Sbjct: 295 REEWDGFPWREA----GDSPEVMAWKQGRTGVEFVDAAMREMYVTGKMHNRARMVVASYL 350 Query: 362 VKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQ 421 K LL WR+G+ +F L D D+ASN GWQW A +G D+ P+FR+FNP Q ++FD Sbjct: 351 TKHLLTHWRVGQRWFEEHLSDWDVASNALGWQWVAGSGPDAAPFFRVFNPDTQAEKFDKG 410 Query: 422 GTFIRHWLPELNNVPTQ----YIHA-PHSWLDKNDLSLNYP-LPIVDHKKACHHTLNQYY 475 G + R W+ E + P Y A P SW S YP PIV K+ L Y Sbjct: 411 GAYRRAWIAEGQDAPPDTALAYFEAIPQSW--NLSASRRYPDSPIVGLKEGRQAALAAYE 468 Query: 476 AAK 478 A K Sbjct: 469 ARK 471 >gi|325981909|ref|YP_004294311.1| Deoxyribodipyrimidine photo-lyase [Nitrosomonas sp. AL212] gi|325531428|gb|ADZ26149.1| Deoxyribodipyrimidine photo-lyase [Nitrosomonas sp. AL212] Length = 434 Score = 221 bits (562), Expect = 3e-55, Method: Compositional matrix adjust. Identities = 154/475 (32%), Positives = 223/475 (46%), Gaps = 47/475 (9%) Query: 7 MSVHLV--WLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYAS 64 MS LV W R DLR+ DN L A S V+ VFI P + + FIY + Sbjct: 1 MSASLVVFWFRRDLRLDDNVGLSHAL-ASGQPVLPVFIFDPSILTGLPENDARVTFIYDT 59 Query: 65 LLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLE 124 L ++ L ++ + + +SIE D VT ++ N YE RD+ + Sbjct: 60 LQTLRTQLEER---YSSSIALYYGNSIEVFDQILRLHSVTAVYANHDYEPYARERDEAVC 116 Query: 125 KRLQHRVIC-KSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIR 183 + L+ R + ++ D VL I + Y VYTP+ + + LR+ Sbjct: 117 EWLKARSVAFNTYKDHVLFEKNEIAKDSGGPYVVYTPYMHKWRKVQSETTLRAYSTSE-- 174 Query: 184 LTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVY-YYVEQRDIPAIQGT 242 N+ + P ++ + + ++A+ I K+ +Y RD PA+ T Sbjct: 175 -----KLGNMIKHLHSPNLSLTDIGFV--RSAVTIPASRLDTKLLQHYAHDRDFPALTAT 227 Query: 243 SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVC 302 S L P+L G +S RQ + + D+ NELIWREF+ ++ +P Sbjct: 228 SLLGPHLRFGTISIRQVFQQALNTSNDIFG----------NELIWREFFSQILWHFPHT- 276 Query: 303 MGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLV 362 F P ++I+W + + W +G TG+P++DA MRQLN G MHNR+RMITASFL Sbjct: 277 QNSSFKPRYDRIQWRNSAADFERWCKGMTGYPLVDAGMRQLNATGTMHNRVRMITASFLC 336 Query: 363 KDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQG 422 K LL+DWR GE YF +LLD D+ASN G WQW A G D+ PYFRIFNP Q K+FD Sbjct: 337 KHLLIDWRWGEAYFAEKLLDYDMASNVGNWQWVAGCGVDAAPYFRIFNPETQIKKFDKNF 396 Query: 423 TFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477 ++I+ W+ + PT YP P++ H A L Y A Sbjct: 397 SYIQTWVNDW-RTPT------------------YPAPMIKHTDARARCLETYQQA 432 >gi|242372923|ref|ZP_04818497.1| deoxyribodipyrimidine photo-lyase [Staphylococcus epidermidis M23864:W1] gi|242349407|gb|EES41008.1| deoxyribodipyrimidine photo-lyase [Staphylococcus epidermidis M23864:W1] Length = 457 Score = 221 bits (562), Expect = 3e-55, Method: Compositional matrix adjust. Identities = 125/340 (36%), Positives = 185/340 (54%), Gaps = 18/340 (5%) Query: 142 LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPF 201 P N+ + YKV+T F K L++ + S + I G + + DY Sbjct: 129 FKPSKTRNNKGEPYKVFTSFYKKWRPYLMKRSVFSYDIKDIAKMGVKSQQKVKG--DYS- 185 Query: 202 QAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWN 261 + I E +A + F + + Y R+ TSQLS YL+ GVL Q +N Sbjct: 186 -----QYGISEADAQYRWSDFLDKDIENYNTNREYLPEVLTSQLSIYLAYGVLDIIQIFN 240 Query: 262 RLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSH 321 L E + K + S++ ELI+REFY LM +YP + F ++W+ + Sbjct: 241 DLLENYD----KDEQNYESFIRELIFREFYYVLMTYYPETAH-QSFKDKYRDLQWSYNKE 295 Query: 322 LLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLL 381 WK+G TGFPIIDAAM +LNT G+MHNR+RM+ + FL KDL +DW GEEYF +L+ Sbjct: 296 NFNLWKEGKTGFPIIDAAMGELNTTGYMHNRMRMVVSQFLTKDLFIDWTWGEEYFRQKLI 355 Query: 382 DGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIH 441 D D ASN GWQW+ASTG D+VPYFR+FNP Q +RFD +I+ ++ LN++ +Y+H Sbjct: 356 DYDSASNVHGWQWSASTGTDAVPYFRMFNPVRQSERFDKDALYIKKFVQTLNDIDAKYLH 415 Query: 442 APHSWLDK-----NDLSLNYPLPIVDHKKACHHTLNQYYA 476 H + + +L +YP IV+H ++ H ++++ A Sbjct: 416 DTHKYERQIKEQGIELGKDYPKQIVNHSESRTHVMSEFKA 455 >gi|268317159|ref|YP_003290878.1| Deoxyribodipyrimidine photo-lyase [Rhodothermus marinus DSM 4252] gi|262334693|gb|ACY48490.1| Deoxyribodipyrimidine photo-lyase [Rhodothermus marinus DSM 4252] Length = 486 Score = 221 bits (562), Expect = 3e-55, Method: Compositional matrix adjust. Identities = 157/476 (32%), Positives = 226/476 (47%), Gaps = 23/476 (4%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 L++ DLR+ +N AL AA ++ +FI R A + +++ SL + Sbjct: 6 LLFTPGDLRLAENPALDAALRTGH-PIVPLFIWPRRAERFERPGAARRWWLHHSLAALDA 64 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130 L ++G +D E L V L +N +E R + L+ R Sbjct: 65 ELQRRGSRLILRVA---EDPAEVLIQLLETLPVAALCWNLPLLPHERRLASSIAPVLRRR 121 Query: 131 VI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189 I LL + + +Y+V+TPF KAL Q + + +P R+ P + Sbjct: 122 SIRLIETVGRTLLDLEQLRTKSGDVYRVFTPFWKALRQQYIPP---APFLPPARIPAPSS 178 Query: 190 -PSN--------IPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ 240 P + +PR D+ + I + GE A LR F + +Y RD + Sbjct: 179 WPDSDTLESLALLPRP-DWASETIASHWLPGEAAAWSTLRTFLAYGLPHYDRARDRLDQE 237 Query: 241 GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPS 300 TS+LSPYL+ G +SP W + E + AF +L WREF +L+ +P Sbjct: 238 ATSKLSPYLANGEISPHLLWRVVGEAQRAGVSSKAVEAFR--RQLAWREFGYYLLYHFPE 295 Query: 301 VCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASF 360 +P P W ++ L+AW+ G TG P+IDAAMRQL GWMHNR R++ AS Sbjct: 296 TTH-RPLRPEWSDFPWRTEAPELEAWQHGRTGIPVIDAAMRQLWQSGWMHNRTRLLVASL 354 Query: 361 LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDP 420 L K+L + W G E+F L+D DLA+N GWQW A G D+ PYFRIFNP +Q K+FDP Sbjct: 355 LTKNLRIHWLRGAEWFWDTLVDADLANNTLGWQWTAGCGADAAPYFRIFNPVLQSKKFDP 414 Query: 421 QGTFIRHWLPELNNVPTQYIHAPHSWLDKNDL--SLNYPLPIVDHKKACHHTLNQY 474 +G +IR WLPEL +P IHAP ++ + YP PIV + L Y Sbjct: 415 EGRYIRRWLPELGRLPAPCIHAPWEAPSCAEMLREIGYPSPIVSLMDSREEALALY 470 >gi|315501047|ref|YP_004079934.1| deoxyribodipyrimidine photo-lyase [Micromonospora sp. L5] gi|315407666|gb|ADU05783.1| Deoxyribodipyrimidine photo-lyase [Micromonospora sp. L5] Length = 440 Score = 220 bits (561), Expect = 3e-55, Method: Compositional matrix adjust. Identities = 140/457 (30%), Positives = 231/457 (50%), Gaps = 41/457 (8%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 +V DLR+ D+ AL AAC D +V+ +++ P + +S ++ F++ SL +++ Sbjct: 7 VVLFTRDLRVHDHPALAAACSAFD-RVVPLYVLDPALQK---LSPNRTRFLHQSLADLRE 62 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEV--RRDKLLEKRL- 127 +L ++G + ++++ L ++V +++ RR++ L Sbjct: 63 ALRKRGGDLVIRRGDPVAETVK------LARKVGAEGVGLSADVSRYAHRRERRLRAECD 116 Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187 +HR+ + F ++ PG++ Y+V++P+ +A Q + D + P +RL Sbjct: 117 RHRMFLRLFPGLTIVEPGALRPGGGDHYRVFSPYFRAW-QGVRWRDELAAPK-RVRLPDG 174 Query: 188 VTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSP 247 V P +P P + P +G + + Y + D A TS+LSP Sbjct: 175 VDPGRLPD----PPKGDSPDAAVGGEAVARRRLTAWLPTLDRYDDIHDDMAGDETSRLSP 230 Query: 248 YLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFS--WLNELIWREFYRHLMAFYPSVCMGK 305 YL G +SP L + ++G + ++ +L WR+FY ++A +P + Sbjct: 231 YLRFGCVSP-------------LAVATRAGGWDGPFVRQLCWRDFYHQVVAGFPDLST-- 275 Query: 306 PFIPWTE--KIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363 + + + +W D H AW +G TG PI+DA MRQL GWMHNR R+ITA +L K Sbjct: 276 --VAYRRGAREDWRDDPHAFDAWAEGRTGMPIVDAGMRQLRAEGWMHNRARLITAGYLTK 333 Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423 L +DWR G E F LLDGD +N+G WQW A TGND+ PY R FNP Q +R+DP G Sbjct: 334 HLGLDWRPGLEIFFRWLLDGDRVNNSGNWQWVAGTGNDTRPY-RGFNPVRQAERYDPDGA 392 Query: 424 FIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPI 460 ++R W+PEL +V + +H P D+ +L+YP P+ Sbjct: 393 YVRRWVPELASVAGKAVHQPWRLPDEVRHTLDYPPPL 429 >gi|227502618|ref|ZP_03932667.1| possible deoxyribodipyrimidine photo-lyase [Corynebacterium accolens ATCC 49725] gi|227076658|gb|EEI14621.1| possible deoxyribodipyrimidine photo-lyase [Corynebacterium accolens ATCC 49725] Length = 445 Score = 220 bits (561), Expect = 4e-55, Method: Compositional matrix adjust. Identities = 148/447 (33%), Positives = 220/447 (49%), Gaps = 44/447 (9%) Query: 9 VHLVWLRNDLRITDNKALYAAC------HNSDAKVIAVFIATPEQWRQHGISARQSHFIY 62 L+W R+DLR++DN+AL A + S +++AV + P + + Sbjct: 2 TSLMWFRDDLRLSDNQALTRAAEAATDKNGSKPELVAVVLDEPAYPSTRPLGGATHWWRE 61 Query: 63 ASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYE--INEV--R 118 SL + + L+ +G+ D+ + + + +NR+Y + EV R Sbjct: 62 RSLHALAQELASRGVKL----LRATGDARTVIPRIAHEVGADTVTWNRRYHGPLREVDAR 117 Query: 119 RDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLP 178 L + + C F L+ P + N YKV+TPF A L AD LP Sbjct: 118 VKATLADAGINAISCPGF---TLVEPWEVTNAQGNPYKVFTPFAAAARSQL--ADEEPLP 172 Query: 179 VP---AIRLTGPVTPSNIPR-FFDYP--FQAIDPMFPIGEQNALHILRKFCKEKVYYYVE 232 VP A R G S+ P D P ++ + GE A L + + +Y E Sbjct: 173 VPELLAGREMGASASSSWPNPSADEPQWAASLAQYWTPGEAGARERLAQL---DLAHYAE 229 Query: 233 QRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYR 292 +RDIPA TS LSP+L G +SPR+ W EE P + F +EL+WR+F Sbjct: 230 ERDIPARNATSLLSPHLRFGEVSPREVWVAAAEE-------PDAEKFQ--SELLWRDFAW 280 Query: 293 HLMAFYPSVC---MGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWM 349 H + P + + + F + +W+ + L+ W++G TG P++DA MR+L G+M Sbjct: 281 HRLYHLPDLATRNVRQKF----NRFDWSWNDPRLKDWQEGTTGIPLVDAGMRELWHTGYM 336 Query: 350 HNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIF 409 HNR+RM+ SFL K+L + WR+GEE+F L+D D ASN WQW A G+D+ P+FRIF Sbjct: 337 HNRVRMVVGSFLTKNLGIHWRLGEEWFWDTLVDADAASNPFNWQWVAGCGDDAAPFFRIF 396 Query: 410 NPTIQGKRFDPQGTFIRHWLPELNNVP 436 NP Q +RFDP G +IR W P L+ P Sbjct: 397 NPETQAQRFDPDGAYIRQWAPTLSAPP 423 >gi|239940078|ref|ZP_04692015.1| deoxyribodipyrimidine photo-lyase [Streptomyces roseosporus NRRL 15998] gi|239986566|ref|ZP_04707230.1| deoxyribodipyrimidine photo-lyase [Streptomyces roseosporus NRRL 11379] Length = 451 Score = 220 bits (560), Expect = 5e-55, Method: Compositional matrix adjust. Identities = 143/464 (30%), Positives = 224/464 (48%), Gaps = 32/464 (6%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 +V +DLR+ D+ L AA ++D +V+ +F+ R + + F+ L + Sbjct: 1 MVLFTSDLRLHDHPVLRAALRDAD-EVVPLFVRDDAVHRAGFDAPNRLAFLADCLADLDT 59 Query: 71 SLSQKG---IVFQYHQCSNFDDSIE--WLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125 L +G IV + +E DS + V+ R+ I E E Sbjct: 60 GLRDRGGRLIVRRGGTAREVKRVVEQTGADSVHIAAGVSGYAAQREERIREALAGTGCEL 119 Query: 126 RLQHRVICKSFDDSVLLPPGSIL-NHALQMYKVYTPFRKALIQNLVQADLRSLPVP-AIR 183 R+ V+ L PG ++ + V+TP+ + V+ +L P +R Sbjct: 120 RVHDAVVTA-------LAPGRVVPTGGKDHFAVFTPYFRRWEAEGVRG---TLAAPRTVR 169 Query: 184 LTGPVTPSNIPRFFDYPFQAIDPMFP-IGEQNALHILRKFCKEKVYYYVEQRDIPAIQGT 242 + V+ +P + + P GE+ ++ + + Y + D A T Sbjct: 170 VPDGVSGDALPDR--DAVKGVSPGLARGGEEAGRKLVTSWLHGPMAAYEDGHDDLAGDAT 227 Query: 243 SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVC 302 S+LSP+L G +S + NR +E K G +++ +L WR+F+ ++A P Sbjct: 228 SRLSPHLHFGTVSAAELANRARE-------KGGPGGEAFVRQLAWRDFHHQVLAARPDAS 280 Query: 303 MGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLV 362 + P ++ W D ++AWK G TG+P++DAAMRQL GWMHNR RM+TASFL Sbjct: 281 W-SDYRPRHDR--WRSDEDEIEAWKSGRTGYPLVDAAMRQLAHEGWMHNRGRMLTASFLT 337 Query: 363 KDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQG 422 K L VDWR+G +F+ L+DGD+A+N WQW A TG D+ P R+ NP IQGKRFDP G Sbjct: 338 KTLYVDWRVGARHFLDLLVDGDVANNQLNWQWVAGTGTDTRPN-RVLNPVIQGKRFDPDG 396 Query: 423 TFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKA 466 ++R W+PEL V +H P + ++YP P+VD +A Sbjct: 397 AYVRRWVPELAEVEGPAVHEPWKLEGLDRAGVDYPDPVVDLAEA 440 >gi|113954039|ref|YP_729488.1| deoxyribodipyrimidine photolyase [Synechococcus sp. CC9311] gi|113881390|gb|ABI46348.1| deoxyribodipyrimidine photolyase [Synechococcus sp. CC9311] Length = 492 Score = 219 bits (559), Expect = 6e-55, Method: Compositional matrix adjust. Identities = 165/487 (33%), Positives = 233/487 (47%), Gaps = 49/487 (10%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHG----ISARQSHFIYASLL 66 L W R DLR+ DN L AA S A V V++ P + ++ + F+ SL Sbjct: 7 LFWHRRDLRLADNLGLQAAEAISPA-VTGVYVLDPALIQPPESLPPMAPARLWFLVESLR 65 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 ++Q+ G D ++ L + ++R E RD+ + K Sbjct: 66 ELQQRWRDVGSRL----LVVAGDPVQLLPRLASLLEAPAVVWSRDVEPYARERDRQVAKA 121 Query: 127 LQHRVICKSFD-DSVLLPPGSILNHALQMYKVYTPF------------------RKALIQ 167 LQ D D +LL P I Y+V+ PF +ALI Sbjct: 122 LQADGCKVLVDWDQLLLAPDLIKTGGGDPYRVFGPFLRNWRGQVERSGPSTVDPPRALID 181 Query: 168 NLVQADLRSLPVPAIRLTGPVTPSNIPRF----FDYPFQAID--PMFPIGEQNALHILRK 221 ++A++ + G + + ++ F+ D P P GE A L Sbjct: 182 --LEAEMLEAVLGGEGALGRLCTEGQRQLEQLQVEHGFRGTDLCPSRP-GEAAAAAQLAA 238 Query: 222 FCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCW---NRLKEEFVDLLIKPKSGA 278 F + Y R+ P + GTS LS LS+G +SPRQ W +KE + + + Sbjct: 239 FADGALLAYEPDRNFPGMPGTSYLSAGLSVGTVSPRQAWCAAQGVKE--IARSDEQQQAI 296 Query: 279 FSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDA 338 W EL WREFY+ + +P + G P+ + W +S +AW++G TG PIIDA Sbjct: 297 TVWEQELCWREFYQQALFHFPELADG-PYREQWRRFPWENNSDWFEAWREGQTGMPIIDA 355 Query: 339 AMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAAST 398 AMRQLN GWMHNR RMI ASFLVKDL+ DWR GE FM +DGDLA+NNGGWQW+AS+ Sbjct: 356 AMRQLNQSGWMHNRCRMIVASFLVKDLICDWRWGERAFMELEVDGDLAANNGGWQWSASS 415 Query: 399 GNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQ-YIHAPHSWLDKNDLSLNYP 457 G D P RIFNP Q +FD +G +IR W+PEL +V T+ I L++ +YP Sbjct: 416 GMDPKP-LRIFNPATQATKFDAEGEYIREWVPELRHVNTKDLISGEIPALERR----SYP 470 Query: 458 LPIVDHK 464 +++HK Sbjct: 471 EQLINHK 477 >gi|225010806|ref|ZP_03701274.1| Deoxyribodipyrimidine photo-lyase [Flavobacteria bacterium MS024-3C] gi|225005014|gb|EEG42968.1| Deoxyribodipyrimidine photo-lyase [Flavobacteria bacterium MS024-3C] Length = 438 Score = 219 bits (559), Expect = 6e-55, Method: Compositional matrix adjust. Identities = 154/479 (32%), Positives = 230/479 (48%), Gaps = 61/479 (12%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 + W R DLR DN L A S KV+ +FI E + FI L ++ + Sbjct: 7 IFWFRRDLRYNDNTGLSKALL-SGKKVLPIFIFDTEILDMLPEKDPRLQFIVNQLHEINQ 65 Query: 71 SLS---QKGIVFQYHQC--SNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125 + Q G+ YH + F +E + + +V ++ N YE V+RD ++ Sbjct: 66 HFNTQFQSGVQ-SYHNSPLNVFKSLLEAANDF----KVCGVYTNEDYEPYAVQRDLEIKA 120 Query: 126 RLQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRK---ALIQNLVQADLRSLPVPA 181 L + + SF D V+ + + Y VYTP++ ++ + + + +P Sbjct: 121 YLATKSVDFHSFKDQVVFEKDQVTKEDGKPYVVYTPYKNKWLSIFEQQYPNGFQEIDMPL 180 Query: 182 IRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEK--VYYYVEQRDIPAI 239 L T ++ M +G +A + K+ + Y +R+ P+I Sbjct: 181 ENLYKMNT-------------SLHDMKALGFSSAEIEVPKYSVTSALIEAYEAKRNFPSI 227 Query: 240 Q-GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFY 298 + GTS+L P+L G +S R + K + K+ F L+ELIWREF+ ++ + Sbjct: 228 ENGTSKLGPHLRFGTVSIRALVQKAKGQ--------KNQVF--LSELIWREFFMQILWHF 277 Query: 299 PSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITA 358 P F P ++IEW ++ + WK G TG+P++DA MR+LN G MHNR+RM+ A Sbjct: 278 PHTPTN-AFKPAYDRIEWRNNAAEFEHWKNGTTGYPLVDAGMRELNATGTMHNRVRMLVA 336 Query: 359 SFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRF 418 SFL K LL+DWR GE YF +LLD +LASN G WQWAA +G D+ PYFRIFNPT Q +F Sbjct: 337 SFLCKHLLIDWRWGEAYFAEKLLDFELASNVGNWQWAAGSGVDAAPYFRIFNPTTQIDKF 396 Query: 419 DPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477 D Q +++ W+ +L L YP PIVDHK A L Y A Sbjct: 397 DKQHIYLKKWVSDLG-------------------ELTYPSPIVDHKMARERCLATYKKA 436 >gi|333028704|ref|ZP_08456768.1| putative deoxyribodipyrimidine photo-lyase [Streptomyces sp. Tu6071] gi|332748556|gb|EGJ78997.1| putative deoxyribodipyrimidine photo-lyase [Streptomyces sp. Tu6071] Length = 481 Score = 219 bits (557), Expect = 1e-54, Method: Compositional matrix adjust. Identities = 139/472 (29%), Positives = 234/472 (49%), Gaps = 40/472 (8%) Query: 3 ATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIY 62 A A+ +V +DLR+ D+ L AA ++ +V+ +F+ P + +A ++ F+ Sbjct: 23 AEPAVKASIVLYTSDLRLHDHPPLRAAVREAE-EVVPLFVRDPGIKKVGFHAANRAAFLA 81 Query: 63 ASLLQVQKSLSQKG--IVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRR- 119 L + L ++G +V + + + + L +RV Y N R Sbjct: 82 DCLGDLDAGLRERGGRLVVRAGEPAQV---VRELVGSTGAERVHVAAGVSAYARNRADRL 138 Query: 120 ----DKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADL- 174 + + ++H + + LPPG ++ + + V+TP+ + ++ L Sbjct: 139 RAALEGTGAELVEHEAVITA------LPPGEVVPGSKDHFAVFTPYHRQWSAQHLREPLG 192 Query: 175 --RSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFP-IGEQNALHILRKFCKEKVYYYV 231 R L VP+ V +PR D + + P GE+ L + ++ + Y Sbjct: 193 APRKLSVPS-----KVRSDGVPRRED--VEGVSPGLARGGEREGRARLADWRRDGISRYE 245 Query: 232 EQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFY 291 + D A GTS+LSPYL G LS +C +R + +GA +++ +L WR+F+ Sbjct: 246 DLHDDLAGDGTSRLSPYLHFGALSAAECVHRAR-------AVGGAGADAFVRQLCWRDFH 298 Query: 292 RHLMAFYPSVCMGKPFIPWTEKIEWNKDS-HLLQAWKQGYTGFPIIDAAMRQLNTIGWMH 350 ++A P+ + + P + D+ H AW++G TG+P++DAAMRQL GWMH Sbjct: 299 HQVLAARPAAAH-EDYRPRGDHWRTGSDAEHEAAAWREGRTGYPVVDAAMRQLAHEGWMH 357 Query: 351 NRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFN 410 NR R++ ASFL K L +DWR+G +F+ L+DGDL +N WQW A TG D+ P R+ N Sbjct: 358 NRGRLLAASFLTKTLYLDWRLGAAHFLDLLVDGDLVNNQMNWQWVAGTGTDTRP-GRVLN 416 Query: 411 PTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVD 462 P Q +++DP+G ++RHW+PEL + + +H P W + YP P+VD Sbjct: 417 PLTQARKYDPEGDYVRHWVPELRGIEGRAVHEP--WKRPREEREGYPEPLVD 466 >gi|296128975|ref|YP_003636225.1| Deoxyribodipyrimidine photo-lyase [Cellulomonas flavigena DSM 20109] gi|296020790|gb|ADG74026.1| Deoxyribodipyrimidine photo-lyase [Cellulomonas flavigena DSM 20109] Length = 457 Score = 219 bits (557), Expect = 1e-54, Method: Compositional matrix adjust. Identities = 143/459 (31%), Positives = 221/459 (48%), Gaps = 27/459 (5%) Query: 11 LVWLRNDLRITDNKALYAACHNSDA---KVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67 + W R DLR++D+ AL AA + A +V+A+++ P WR G + ++ ASL Sbjct: 4 ICWFRRDLRLSDHPALVAAVAEARAAGDEVVALYVVDPALWRAAGTP--RLAYLAASLRS 61 Query: 68 VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127 + ++ + +V ++ + + + Q + + + E RRD+ +E L Sbjct: 62 LDEATGGR-LVVRHGRADRV------VPAVARQVGASSVHVSAATEPYGRRRDEAVEAAL 114 Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKA-LIQNLVQADLRSLPVPAIRLTG 186 ++ +V PG + Y+V+TPFR A L + R VP L Sbjct: 115 DVPLVRTGCPYAVA--PGRLRTGQGGPYQVFTPFRGAWLDHGWHEPAPRPRDVPWAALAS 172 Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246 P D P + + P GE+ A F +E + Y R+ P + TS +S Sbjct: 173 DGLP-------DAPATDVT-LPPAGERAARERWHAFVREDLAGYDVDRNRPDLDVTSWMS 224 Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG-- 304 +L G + PR L + ++ +EL WREF+ ++ +P+ Sbjct: 225 VHLKHGEIHPRTLLADLADAGRGARGPLADSVATYRSELAWREFHADVLWHHPAAARTSL 284 Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364 + +P AW G TG+P++DA MRQL GW+HNR+RM+ ASFLVKD Sbjct: 285 REVVPQDAWATGPPADRAFAAWTDGRTGYPLVDAGMRQLRAQGWVHNRVRMVVASFLVKD 344 Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424 L + W+ G +FM L+DGD+ N WQW A TG D+ PYFR+FNP Q ++FDP GT+ Sbjct: 345 LHLPWQRGAAHFMEWLVDGDVPQNQLNWQWVAGTGRDAAPYFRVFNPVTQARKFDPDGTY 404 Query: 425 IRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDH 463 +R W+PEL +VP + +H P W L YP +VDH Sbjct: 405 VRRWVPELRDVPDRAVHEP--WTLPGGLPAGYPERVVDH 441 >gi|254875029|ref|ZP_05247739.1| phrB, deoxyribodipyrimidine photolyase [Francisella tularensis subsp. tularensis MA00-2987] gi|254841028|gb|EET19464.1| phrB, deoxyribodipyrimidine photolyase [Francisella tularensis subsp. tularensis MA00-2987] Length = 355 Score = 218 bits (556), Expect = 1e-54, Method: Compositional matrix adjust. Identities = 134/365 (36%), Positives = 199/365 (54%), Gaps = 40/365 (10%) Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQ------NLVQAD---LRSLP 178 QH++ SF+ S+L+ P YKVYTPF K LI+ N+ + + LR L Sbjct: 3 QHKINVNSFNGSLLIEPWQCKKDDGTHYKVYTPFYKELIKIRKYRSNIAKPNFSYLRKLN 62 Query: 179 ----VPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQR 234 + +++L P + +Q I + IGE + IL +F KV Y R Sbjct: 63 NSENLDSLKLIEP----------KHSWQNIIKQWQIGESASHQILEEFLDNKVKEYKTAR 112 Query: 235 DIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHL 294 D + TS+LSPYL G +SP Q +N ++ +D + + ++ EL+WR+F + Sbjct: 113 DFMSTDSTSKLSPYLHFGEISPNQIFNAVQS--LDYI---GNNEEHFIKELVWRDFSYYQ 167 Query: 295 MAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLR 354 + +YP + K + +W+ D LL+ W++G TG PI+DA MR+L G+MHNR+R Sbjct: 168 IYYYPEL-HNKNINQKFDSFKWDNDPTLLKKWQKGQTGIPIVDAGMRELWQAGYMHNRVR 226 Query: 355 MITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQ 414 MI ASFL+K+ L+ W+ GE++F L D D ASNN WQW A G D+ PYFRIFNP +Q Sbjct: 227 MIVASFLIKNCLIHWKYGEKWFFDTLFDADFASNNANWQWVAGCGLDAAPYFRIFNPVLQ 286 Query: 415 GKRFDPQGTFIRHWLPELNNVPTQYIHAPHSW------LDKNDLSL--NYPLPIVDHKKA 466 ++F+ +IR ++PEL +P + I P W L + ++L NYP PIVD KK+ Sbjct: 287 AEKFEAY-EYIRKYVPELKLLPNKLIAKP--WEASELVLQEAGITLGQNYPKPIVDLKKS 343 Query: 467 CHHTL 471 L Sbjct: 344 RDRAL 348 >gi|311894408|dbj|BAJ26816.1| putative deoxyribodipyrimidine photo-lyase [Kitasatospora setae KM-6054] Length = 441 Score = 218 bits (555), Expect = 2e-54, Method: Compositional matrix adjust. Identities = 154/465 (33%), Positives = 230/465 (49%), Gaps = 35/465 (7%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M++ +V DLR+ DN AL+AA +D +V+ +F+ P + + F+ L Sbjct: 1 MTLAIVLFTQDLRLHDNPALHAAHTRAD-QVVPLFVTDPAVAAAGFAAPNRVAFLSGCLA 59 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 ++ +L + G + D+ E + T + RR++ L + Sbjct: 60 ELDAALRRTGSRLTVREG----DTAEQTAKLAAETGATAVHVAAGVSTYARRREQRLRRA 115 Query: 127 LQHRVICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVP-AIRL 184 L R+ D S+ +PPG++ Y V+TP+ +A Q +A LP P A+R Sbjct: 116 LGERL--HVHDGSLTAVPPGAVRPIGRDHYAVFTPYLRAWQQTPRRA---PLPAPRALRT 170 Query: 185 TGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244 + + +P + DP GE A + + + Y + D A TS Sbjct: 171 PDDLPSAPLPTATPTARRLPDP----GEAAARRTWQHWHADD---YADLHDALADDATSH 223 Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304 LSPYL G LS + + L E+ + +GA ++ +L+WR+F+ ++A P+ Sbjct: 224 LSPYLHFGCLSANELAH-LAEQ------RGGTGAEAFARQLVWRDFHHQVLAARPAAAHS 276 Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364 + P + W+ D AW+ G TGFP+IDAAMRQL GWMHNR R++TASFL K Sbjct: 277 D-YRP--RPVPWHNDPDEFAAWRDGRTGFPVIDAAMRQLAETGWMHNRARLLTASFLSKS 333 Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424 L DWR G +F+ L+DGDLA+N WQW A TG D+ P R+ NP +Q R DP+GT+ Sbjct: 334 LHHDWRPGAAHFLHHLVDGDLANNQLNWQWTAGTGTDTRPN-RVLNPLVQADRHDPEGTY 392 Query: 425 IRHWLPELNNVPTQYIHAP-HSWLDKNDLSLNYPLPIVDHKKACH 468 +R WLPEL ++PTQ IH P S L D YP PI+ H Sbjct: 393 VRRWLPELAHLPTQDIHRPWQSLLCPAD----YPDPIIPPDATGH 433 >gi|195997383|ref|XP_002108560.1| hypothetical protein TRIADDRAFT_51590 [Trichoplax adhaerens] gi|190589336|gb|EDV29358.1| hypothetical protein TRIADDRAFT_51590 [Trichoplax adhaerens] Length = 497 Score = 218 bits (554), Expect = 2e-54, Method: Compositional matrix adjust. Identities = 156/497 (31%), Positives = 239/497 (48%), Gaps = 38/497 (7%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFI-ATPEQWRQHGISARQSHFIYASL 65 M +VWLR DLR+ DN AL+ A +I + TP +W+ + +++ SL Sbjct: 1 MVCTVVWLRYDLRLIDNPALFHAAKRGHVVIIYILDQETPGKWK---LGKASLWWLHHSL 57 Query: 66 LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125 +Q L + I + + D + L LQ R +++NR YE V+RD+ +E+ Sbjct: 58 KSLQNDLLKFNIPLILRRGA---DPLTILRQVLLQSRADAVYWNRCYEPYAVKRDQSIEE 114 Query: 126 RLQ-HRVICKSFDDSVLLPPGSILNHALQMYKVY--------------TPFRKALIQNLV 170 L+ V SF +L P ++ + + +K+Y P+ K N + Sbjct: 115 ALKVDDVTVGSFQAGLLYEPWAVKSAKDEPFKLYIMYWNRCLSSDQPRKPYDKPRFNNTL 174 Query: 171 QADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYY 230 +++ + + L D+ + + GE A+ L++F K K+ Y Sbjct: 175 DIKVQTDTLDSWHLVSAKK--------DWKDELKIVIGCPGEDGAIRKLKEFIKYKLVDY 226 Query: 231 VEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREF 290 + ++ TSQLS +L G +SP W+ KE V L P + +L EL WR+F Sbjct: 227 RKGKETVWPSKTSQLSTHLHFGEISPFVVWHTAKES-VHLRSVPSDSSQKFLTELGWRDF 285 Query: 291 YRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMH 350 HL+ +YP + + E I W D L+ W+QG TG+PI+DA MR+L G + Sbjct: 286 CFHLLHYYPDFPEKSYKLNFDETI-WKVDKEKLKLWQQGKTGYPIVDAGMRELLNTGVIS 344 Query: 351 NRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFN 410 R+R I ASFL K LL+ W+ G E+F L+D DLA N+ WQ G D YF I N Sbjct: 345 YRVRTIVASFLTKHLLIPWQNGAEWFWDTLVDADLALNSCSWQRITGCGADISSYFYIIN 404 Query: 411 PTIQGKRFDPQGTFIRHWLPELNNVPTQYIH----APHSWLDKNDLSLN--YPLPIVDHK 464 P QG+RFD G ++R W+PE+ + YI AP + L K ++L YP IV+HK Sbjct: 405 PVTQGERFDSDGNYVRKWIPEIAKLSNDYIQQPWEAPAAVLKKAGIALGKTYPKCIVNHK 464 Query: 465 KACHHTLNQYYAAKKQS 481 KA L ++ K+Q Sbjct: 465 KARDVALTKFAPLKRQE 481 >gi|134100631|ref|YP_001106292.1| putative deoxyribodipyrimidine photolyase [Saccharopolyspora erythraea NRRL 2338] gi|291006735|ref|ZP_06564708.1| deoxyribodipyrimidine photo-lyase [Saccharopolyspora erythraea NRRL 2338] gi|133913254|emb|CAM03367.1| putative deoxyribodipyrimidine photolyase [Saccharopolyspora erythraea NRRL 2338] Length = 448 Score = 218 bits (554), Expect = 2e-54, Method: Compositional matrix adjust. Identities = 146/474 (30%), Positives = 223/474 (47%), Gaps = 38/474 (8%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M+ + DLR+ DN L AA +V+ +F+ + R S R++ F+ SL Sbjct: 1 MTTAIALFTRDLRVHDNPMLAAAAEAD--RVVPLFVLDDDIQRSRFASPRRTRFLDESLT 58 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSI---EWLDSYCLQ--QRVTKLFYNRQYEINEVRRDK 121 + ++L G + + D+ E +D+ + V+ RQ + E + Sbjct: 59 DLDENLRGLGGRLVLRRGALVDEVCRIAEEVDAAEVHICADVSGYAMRRQARLAEALSAQ 118 Query: 122 LLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQ---ADLRSLP 178 E R V+ + P G+ +H + V+TP+ + ++ + A R L Sbjct: 119 RRELRCHDEVVT-VLAPGRVTPGGADKDH----FTVFTPYLRRWLETGKRPPAAKPRRLR 173 Query: 179 VPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPA 238 +P+ GP + D +P GE ++ V Y E+ D A Sbjct: 174 LPSRLSIGPRPAGG----------SADGTWPGGETEGRRRADRWLGGGVRAYHERHDDLA 223 Query: 239 IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFY 298 TSQLSPYL G LS R+ +R G +++ +L WR+F+ ++A Sbjct: 224 ADATSQLSPYLHFGCLSARELADRAGR---------GEGPEAFVRQLAWRDFHHQVLAAR 274 Query: 299 PSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITA 358 P + + P ++ W++D+ L+AWKQG TG PI+DA MRQL +GWMHNR R+IT Sbjct: 275 PEAVH-EDYRPRGDR--WHRDADALRAWKQGRTGVPIVDAGMRQLLELGWMHNRARLITG 331 Query: 359 SFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRF 418 SFL K L +DWR G +F L+DGD+A+N WQW A TG D+ P R+ NP Q R+ Sbjct: 332 SFLTKSLYLDWRAGAWHFFDHLVDGDIANNCLNWQWVAGTGTDTRPN-RVLNPLRQADRY 390 Query: 419 DPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLN 472 D G ++R W+PEL + +H P D L YP PIVD +A L+ Sbjct: 391 DAGGDYVRRWVPELAGLGAGDVHRPWRLGDDELGRLGYPAPIVDLDQARERFLD 444 >gi|225011846|ref|ZP_03702284.1| Deoxyribodipyrimidine photo-lyase [Flavobacteria bacterium MS024-2A] gi|225004349|gb|EEG42321.1| Deoxyribodipyrimidine photo-lyase [Flavobacteria bacterium MS024-2A] Length = 434 Score = 217 bits (552), Expect = 4e-54, Method: Compositional matrix adjust. Identities = 150/475 (31%), Positives = 222/475 (46%), Gaps = 54/475 (11%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 V L W R DLRI DN LY A + +VI +FI E ++ + I +L + Sbjct: 4 VTLFWFRRDLRIQDNCGLYHALKGEN-RVIPIFIFDKEILKKLPKQDARVEMILLALGAI 62 Query: 69 QKSLSQ-KGIVFQYHQCSN--FDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125 ++ + + V +YH F I+ Q + K+ N YE RD ++ Sbjct: 63 DIAMKRNRCNVGKYHGTPKAIFSKLIK-------QWNIEKVICNEDYEPYASERDSEIKT 115 Query: 126 RLQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL 184 L+ I + + D V+ ++ YKVYTP+ + ++ + L+ P + L Sbjct: 116 LLEAAGIQFECYKDQVIFEKEEVVKGDGTPYKVYTPYSRKWLEKYQETPLQFYP-SEVEL 174 Query: 185 TGPVTPSNIP--RFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGT 242 + ++P D F+ P +F + Y R+ PA+ T Sbjct: 175 DSLASNESLPDLNLSDLGFETSGIAQP---------EYRFDDTLIDQYEATRNFPALDQT 225 Query: 243 SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVC 302 S+L +L G +S R+ N+ + +K ELIWREF+ ++ +P Sbjct: 226 SRLGAHLRFGTVSIRRLVNQASSRSNNTFLK----------ELIWREFFMQILWHFP-YT 274 Query: 303 MGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLV 362 K F P E+I W + + W G TG+P++DA MR+LN G+MHNR+RM+ SFL Sbjct: 275 QQKSFKPQYERIIWRNNPDEFEKWCAGETGYPLVDAGMRELNETGFMHNRVRMLVGSFLC 334 Query: 363 KDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQG 422 K LL+DWR GE YF +LLD +++SN G WQW A G D+ PYFRIFNP+ Q K+FD Q Sbjct: 335 KHLLIDWRWGESYFAEKLLDYEMSSNVGNWQWVAGCGVDAAPYFRIFNPSEQIKKFDKQL 394 Query: 423 TFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477 +I+ W+P N L+YP PIVDHK A L Y A Sbjct: 395 QYIQKWVP-------------------NFQELDYPSPIVDHKYARERCLTTYKEA 430 >gi|311739236|ref|ZP_07713073.1| deoxyribodipyrimidine photolyase [Corynebacterium pseudogenitalium ATCC 33035] gi|311305662|gb|EFQ81728.1| deoxyribodipyrimidine photolyase [Corynebacterium pseudogenitalium ATCC 33035] Length = 477 Score = 217 bits (552), Expect = 4e-54, Method: Compositional matrix adjust. Identities = 139/445 (31%), Positives = 215/445 (48%), Gaps = 42/445 (9%) Query: 5 TAMSVHLVWLRNDLRITDNKALYAACHNS---DAKVIAVFIATPEQWRQHGISARQSHFI 61 TAM+ L+W R+DLR+ DN+AL A + DA ++AV + P + + + Sbjct: 42 TAMTC-LMWFRDDLRLHDNQALSRAATAASLGDAPLVAVVLDEPAYPGTRPLGGATTWWR 100 Query: 62 YASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDK 121 SL + L+ G+ D+ E + + T + + R+Y D Sbjct: 101 ERSLYALAHDLADHGVEL----IRAAGDAREEIPRLAAELGATTVTWTRRYHGPLREVDA 156 Query: 122 LLEKRLQHR-VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVP 180 +++ L + S L+ P + N Q YKV+TPF KA + + +P Sbjct: 157 TVKETLTSQGTTATSLPGFTLVEPWEVTNGQGQPYKVFTPFSKAAASQVAGDEPEGVPEM 216 Query: 181 AIRLTG------PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQR 234 + P P+ ++ + GE A L + + Y E+R Sbjct: 217 GASASSASAWPKPTEPAWAASLAEH--------WTPGEAGARERLAQL---DLANYAEER 265 Query: 235 DIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHL 294 DIPA+ TS LSP+L G +SPR+ W + A + +EL+WR+F H Sbjct: 266 DIPALNATSLLSPHLRFGEVSPREVW---------FAAAEEPEAAKFHSELLWRDFAWHR 316 Query: 295 MAFYPSVC---MGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHN 351 + P++ + + F ++ +W+ D L+ W+ G TG P++DA MR+L G+MHN Sbjct: 317 LYHLPNLATENVREKF----DRFDWSWDDPRLKDWQAGTTGIPLVDAGMRELWATGYMHN 372 Query: 352 RLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNP 411 R+RM+ SFL K+L + WR+GEE+F L+D D ASN WQW A G+D+ P+FRIFNP Sbjct: 373 RVRMVVGSFLTKNLGIHWRLGEEWFWDTLVDADAASNPFNWQWVAGCGDDAAPFFRIFNP 432 Query: 412 TIQGKRFDPQGTFIRHWLPELNNVP 436 Q KRFDP G ++R W P L+ P Sbjct: 433 ETQAKRFDPDGEYVRRWAPALSAPP 457 >gi|48478134|ref|YP_023840.1| deoxyribodipyrimidine photolyase [Picrophilus torridus DSM 9790] gi|48430782|gb|AAT43647.1| deoxyribodipyrimidine photolyase [Picrophilus torridus DSM 9790] Length = 431 Score = 217 bits (552), Expect = 4e-54, Method: Compositional matrix adjust. Identities = 149/465 (32%), Positives = 240/465 (51%), Gaps = 55/465 (11%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQS-HFIYASLLQ 67 ++L R DLR+ DN AL + +N A +FI P Q + + + ++ +F+ +SL Sbjct: 1 MNLFIFRRDLRLYDNTALLKSLNNETA---TIFIMDPAQVKNNEYRSEKALNFMISSLYD 57 Query: 68 VQKSL-SQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD-KLLEK 125 + + G + +H D ++ L ++ + +++ NR Y ++RD ++ E Sbjct: 58 LMTDIEGNHGKLAVFHG-----DPVDVLKRLVNRENINEIYINRDYTPFSIKRDERIKEF 112 Query: 126 RLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185 +++ + + DD L P + + +K +T F ++ V+ PV I+ + Sbjct: 113 SIKNNIKFNALDDYFLSDP-ELRTGSGSFFKNFTAFYNRAMEINVKK-----PVYEIKKS 166 Query: 186 G--PVTPSNIP-RFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGT 242 P+ ++ ++ +Y G + A+ + F K RD P + T Sbjct: 167 NLIPIDGDDMELKYNNY-----------GRKTAIEKMHNFIKND----YSLRDFPELNMT 211 Query: 243 SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVC 302 S LS + G +S R+ ++ +K+ + +L WR+FY ++ +P V Sbjct: 212 SFLSADIKFGNISIREAYHYIKDP-------------EFRRQLYWRDFYLYIAYHFPYV- 257 Query: 303 MGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLV 362 G F I+W + AWK G TG+PI+DAAMR LN G+++NRLRMI +SFLV Sbjct: 258 FGSNF-NRKYNIKWENKEKYIDAWKNGLTGYPIVDAAMRSLNETGYINNRLRMIVSSFLV 316 Query: 363 KDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQG 422 KDL VDWRIGE+YF +L+D D ASNNG WQW ASTG +S +RI NP IQ K+FDP+ Sbjct: 317 KDLHVDWRIGEKYFAQKLIDYDPASNNGNWQWVASTGVNSRGMYRIINPWIQQKKFDPEC 376 Query: 423 TFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKAC 467 FI+ ++ EL+++ + IH L K L+ NYP P+VDHK A Sbjct: 377 KFIKRYVNELSDLEPEIIHN----LYKIRLN-NYPAPLVDHKTAV 416 >gi|163736265|ref|ZP_02143684.1| Deoxyribodipyrimidine photolyase [Phaeobacter gallaeciensis BS107] gi|161390135|gb|EDQ14485.1| Deoxyribodipyrimidine photolyase [Phaeobacter gallaeciensis BS107] Length = 479 Score = 217 bits (552), Expect = 4e-54, Method: Compositional matrix adjust. Identities = 158/475 (33%), Positives = 231/475 (48%), Gaps = 30/475 (6%) Query: 13 WLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQKSL 72 W+R DLR+ DN AL AA VI VFI + A + L + K L Sbjct: 14 WVRRDLRLADNPALAAAVAAG-VPVIPVFIFET---LDEDLGAAPRFRLGLGLAHLAKEL 69 Query: 73 SQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHRVI 132 Q+G + + E L + + + R Y+ + RD ++++L+ + I Sbjct: 70 EQRGARLILRRGP----AQEVLTQLITETGAGAVHWTRAYDPQAIARDTGIKEQLKGQGI 125 Query: 133 C-KSFDDSVLLPPGSILNHALQMYKVYTPFRKAL----IQNLVQADLRSLPVPAIRLTGP 187 KSF +L P ++ MY+VY+P+ K++ + L+ A R +P PA T Sbjct: 126 AAKSFGGHLLFEPWTVETKTGGMYRVYSPYWKSVRDRDVDGLIAAPSR-IPAPAHWPTSD 184 Query: 188 VTPS-NIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246 S + + +GE A L +F +V Y + RD PA+ TS LS Sbjct: 185 DLDSWQMAAAMRRGADVVAQYCRVGEDAAQERLAEFLDTRVADYKQDRDFPAVDATSGLS 244 Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP 306 L+ G +SPR+ W+ ++ KSGA +L E++WREF HLM P + + + Sbjct: 245 ENLAWGEISPRRMWH----HGLEARRAGKSGAEHFLKEIVWREFAYHLMFHTPHI-LTRN 299 Query: 307 FIPWTEKIEWN-KDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365 + P E W+ +D + AW++G TG+ +DAAMR+L G MHNR RMI ASFL K + Sbjct: 300 WRPEWEHFNWSERDDDKVDAWRRGQTGYNFVDAAMRELYVTGKMHNRARMIVASFLTKHM 359 Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425 L WRIG+++F L+D D ASN GWQW A +G D+ P+FRIFNP Q ++FDP+G + Sbjct: 360 LTHWRIGQQWFEECLVDWDPASNAMGWQWVAGSGPDASPFFRIFNPDGQLEKFDPKGRYQ 419 Query: 426 RHWLPELNNVPTQ-----YIHAPHSW-LDKNDLSLNYPLPIVDHKKACHHTLNQY 474 W+ E P Q Y P SW L D P +D K+ L Y Sbjct: 420 SAWIAEGQANPPQTALDFYRATPLSWELSPQDTRAE---PFLDLKEGRARALEAY 471 >gi|326387639|ref|ZP_08209245.1| deoxyribodipyrimidine photo-lyase type I [Novosphingobium nitrogenifigens DSM 19370] gi|326207685|gb|EGD58496.1| deoxyribodipyrimidine photo-lyase type I [Novosphingobium nitrogenifigens DSM 19370] Length = 455 Score = 216 bits (551), Expect = 5e-54, Method: Compositional matrix adjust. Identities = 149/467 (31%), Positives = 221/467 (47%), Gaps = 50/467 (10%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 LVWLR DLR+ ++ V+ V++ E R + +++ SL + + Sbjct: 6 LVWLRQDLRLA--DQAAFLAAAAEGPVVPVYVLDDETPRHRRMGGASRWWLHHSLKSLDE 63 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130 L Q+G + + E L +RV L + + N R Sbjct: 64 GLRQRGSRLILRRGPAHRELAE-LAREVGARRVHALAHVEPWWRN------------AER 110 Query: 131 VICKSFD-----DSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185 + K+ D L PPG++L + YK+YTPF +AL + + R +P P R+ Sbjct: 111 AVAKTLDLVLHEGQYLAPPGTVLTGSGLPYKIYTPFWRALSERMPTH--RPVPAPG-RID 167 Query: 186 GPVTPSNIPRFFDYPFQAIDPMFPIG--------EQNALHILRKFCKEKVYYYVEQRDIP 237 P + + R D+ P + G E A L F K Y E R+ P Sbjct: 168 APASWPDGDRLDDWTLVPTRPDWAAGFRTRWTPGEVGAHERLDMFIG-KASRYGEWRNFP 226 Query: 238 AIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFS-WLNELIWREFYRHLMA 296 +++GTS+LSP+L G +S W+ + + G+ S +L E+ WR++ +++ Sbjct: 227 SVEGTSRLSPHLHFGEISAATVWHSVAD---------AGGSVSTFLGEVGWRDYAANVLL 277 Query: 297 FYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMI 356 P G+ E+ W +D+ L+AW+ G TG+PI+DA MR+L GWMHNR+RMI Sbjct: 278 QMPDYA-GRSAREAFERFPWREDADDLRAWQTGMTGYPIVDAGMRELWATGWMHNRVRMI 336 Query: 357 TASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGK 416 ASFLVK LL+DWR GE +F L+D D A N WQW A TG DS + RI P Q Sbjct: 337 AASFLVKHLLIDWREGERWFWDTLVDADHAINAVNWQWTAGTGVDSNMFVRIMAPLTQSP 396 Query: 417 RFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDH 463 +FD G +IR W+PEL++V IH P YP P++DH Sbjct: 397 KFDAAG-YIRRWVPELSDVADADIHDPRI------RPRGYPAPLIDH 436 >gi|163741206|ref|ZP_02148598.1| deoxyribodipyrimidine photolyase [Phaeobacter gallaeciensis 2.10] gi|161385559|gb|EDQ09936.1| deoxyribodipyrimidine photolyase [Phaeobacter gallaeciensis 2.10] Length = 479 Score = 216 bits (551), Expect = 5e-54, Method: Compositional matrix adjust. Identities = 162/481 (33%), Positives = 236/481 (49%), Gaps = 38/481 (7%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 L W+R DLR+ +N AL AA A VI VFI + A + L + K Sbjct: 12 LWWVRRDLRLAENPALDAAVAAG-APVIPVFIFDT---LDEDLGAAPRFRLGLGLAHLAK 67 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130 L ++G + + E L + + + R Y+ + RD ++K+L+ + Sbjct: 68 GLERRGARLILRRGP----AQEVLTQLITETGAGAIHWTRAYDPQAIARDTAIKKQLKGQ 123 Query: 131 VIC-KSFDDSVLLPPGSILNHALQMYKVYTPFRKAL----IQNLVQADLRSLPVPA---- 181 I KSF +L P ++ MY+VY+P+ K++ + L+ A R +P PA Sbjct: 124 GIAAKSFGGHLLFEPWTVETKTGGMYRVYSPYWKSVRDRDVDGLIAAPSR-IPAPAQWPA 182 Query: 182 -IRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ 240 L + + R D Q +GE A L +F +V Y + RD PA+ Sbjct: 183 SDDLDSWQLAAGMRRGADVVAQYCR----VGEDAAQARLAEFLDTRVADYKQDRDFPAVD 238 Query: 241 GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPS 300 TS LS L+ G +SPR+ W+ ++ KSGA +L E++WREF HLM P Sbjct: 239 ATSGLSENLAWGEISPRRMWH----HGLEARRAGKSGAEHFLKEIVWREFAYHLMFHTPH 294 Query: 301 VCMGKPFIPWTEKIEWNK-DSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITAS 359 + + + + P E W++ D + AW++G TG+ +DAAMR+L G MHNR RMI AS Sbjct: 295 I-LTRNWRPEWESFRWSEQDDDRVDAWRRGQTGYNFVDAAMRELYVTGKMHNRARMIVAS 353 Query: 360 FLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFD 419 FL K +L WRIG+++F L+D D ASN GWQW A +G D+ P+FRIFNP Q ++FD Sbjct: 354 FLTKHMLTHWRIGQQWFEECLVDWDPASNAMGWQWVAGSGPDASPFFRIFNPDGQLEKFD 413 Query: 420 PQGTFIRHWLPELNNVPTQ-----YIHAPHSW-LDKNDLSLNYPLPIVDHKKACHHTLNQ 473 P+G + W+ E P Q Y P SW L D + P VD K+ L Sbjct: 414 PKGRYQSAWIAEGQANPPQTALDFYRATPLSWGLSPQDRRAS---PFVDLKEGRARALEA 470 Query: 474 Y 474 Y Sbjct: 471 Y 471 >gi|119389332|pdb|2E0I|A Chain A, Crystal Structure Of Archaeal Photolyase From Sulfolobus Tokodaii With Two Fad Molecules: Implication Of A Novel Light-Harvesting Cofactor gi|119389333|pdb|2E0I|B Chain B, Crystal Structure Of Archaeal Photolyase From Sulfolobus Tokodaii With Two Fad Molecules: Implication Of A Novel Light-Harvesting Cofactor gi|119389334|pdb|2E0I|C Chain C, Crystal Structure Of Archaeal Photolyase From Sulfolobus Tokodaii With Two Fad Molecules: Implication Of A Novel Light-Harvesting Cofactor gi|119389335|pdb|2E0I|D Chain D, Crystal Structure Of Archaeal Photolyase From Sulfolobus Tokodaii With Two Fad Molecules: Implication Of A Novel Light-Harvesting Cofactor Length = 440 Score = 216 bits (551), Expect = 5e-54, Method: Compositional matrix adjust. Identities = 155/470 (32%), Positives = 239/470 (50%), Gaps = 52/470 (11%) Query: 14 LRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQS-HFIYASLLQVQKSL 72 R DLR+ DN L A D +VI VFIA P Q + + + F+ SLL++ L Sbjct: 7 FRRDLRLEDNTGLNYALSECD-RVIPVFIADPRQLINNPYKSEFAVSFMINSLLELDDEL 65 Query: 73 SQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHRVI 132 +KG + + F E + S +V ++ N Y + RD+ + K + I Sbjct: 66 RKKG-----SRLNVFFGEAEKVVSRFFN-KVDAIYVNEDYTPFSISRDEKIRKVCEENGI 119 Query: 133 -CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPS 191 K+++D LL P S+ +H + +T F + + ++ + + VT S Sbjct: 120 EFKAYED-YLLTPKSLFHH-----RNFTSFYNEV------SKVKVREPETMEGSFDVTDS 167 Query: 192 NIPRFFDYPFQAID-PMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLS 250 ++ F F+ I+ P+F G + L++L + +RD PA +LSP+L Sbjct: 168 SMNVDFLLTFKKIESPLFRGGRREGLYLLHRNVD------FRRRDYPAENNNYRLSPHLK 221 Query: 251 IGVLSPRQCW--NRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFI 308 G +S R+ + + KEEFV EL WR+F+ L+A+Y G + Sbjct: 222 FGTISMREAYYTQKGKEEFV--------------RELYWRDFF-TLLAYYNPHVFGHCYR 266 Query: 309 PWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVD 368 + I W + +AWK+G TG+PIIDA MR LN+ G+++ R+RM+ A FLVK L VD Sbjct: 267 REYDNISWENNESYFEAWKEGRTGYPIIDAGMRMLNSTGYINGRVRMLVAFFLVKVLFVD 326 Query: 369 WRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHW 428 WR GE YF ++L+D D A NNG WQW ASTG D + FR+FNP Q ++FDP+ FI+ W Sbjct: 327 WRWGERYFATKLVDYDPAINNGNWQWIASTGVDYM--FRVFNPWKQQEKFDPEAKFIKEW 384 Query: 429 LPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478 + EL +VP IH+ + K + YP PIV+ + ++ ++Y K Sbjct: 385 VEELKDVPPSIIHSIY----KTKVP-GYPSPIVNWLERVNYVKSEYKNVK 429 >gi|15921125|ref|NP_376794.1| deoxyribodipyrimidine photolyase [Sulfolobus tokodaii str. 7] gi|15621910|dbj|BAB65903.1| 432aa long hypothetical deoxyribodipyrimidine photolyase [Sulfolobus tokodaii str. 7] Length = 432 Score = 216 bits (551), Expect = 6e-54, Method: Compositional matrix adjust. Identities = 156/470 (33%), Positives = 239/470 (50%), Gaps = 52/470 (11%) Query: 14 LRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQS-HFIYASLLQVQKSL 72 R DLR+ DN L A D +VI VFIA P Q + + + F+ SLL++ L Sbjct: 7 FRRDLRLEDNTGLNYALSECD-RVIPVFIADPRQLINNPYKSEFAVSFMINSLLELDDEL 65 Query: 73 SQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHRVI 132 +KG + + F E + S +V ++ N Y + RD+ + K + I Sbjct: 66 RKKG-----SRLNVFFGEAEKVVSRFFN-KVDAIYVNEDYTPFSISRDEKIRKVCEENGI 119 Query: 133 -CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPS 191 K+++D LL P S+ +H + +T F + + V+ + + VT S Sbjct: 120 EFKAYED-YLLTPKSLFHH-----RNFTSFYNEVSKVKVREP------ETMEGSFDVTDS 167 Query: 192 NIPRFFDYPFQAID-PMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLS 250 ++ F F+ I+ P+F G + L++L + +RD PA +LSP+L Sbjct: 168 SMNVDFLLTFKKIESPLFRGGRREGLYLLHRNVD------FRRRDYPAENNNYRLSPHLK 221 Query: 251 IGVLSPRQCW--NRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFI 308 G +S R+ + + KEEFV EL WR+F+ L+A+Y G + Sbjct: 222 FGTISMREAYYTQKGKEEFV--------------RELYWRDFF-TLLAYYNPHVFGHCYR 266 Query: 309 PWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVD 368 + I W + +AWK+G TG+PIIDA MR LN+ G+++ R+RM+ A FLVK L VD Sbjct: 267 REYDNISWENNESYFEAWKEGRTGYPIIDAGMRMLNSTGYINGRVRMLVAFFLVKVLFVD 326 Query: 369 WRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHW 428 WR GE YF ++L+D D A NNG WQW ASTG D + FR+FNP Q ++FDP+ FI+ W Sbjct: 327 WRWGERYFATKLVDYDPAINNGNWQWIASTGVDYM--FRVFNPWKQQEKFDPEAKFIKEW 384 Query: 429 LPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478 + EL +VP IH+ + K + YP PIV+ + ++ ++Y K Sbjct: 385 VEELKDVPPSIIHSIY----KTKVP-GYPSPIVNWLERVNYVKSEYKNVK 429 >gi|182439675|ref|YP_001827394.1| deoxyribodipyrimidine photo-lyase [Streptomyces griseus subsp. griseus NBRC 13350] gi|178468191|dbj|BAG22711.1| deoxyribodipyrimidine photo-lyase [Streptomyces griseus subsp. griseus NBRC 13350] Length = 455 Score = 216 bits (550), Expect = 7e-54, Method: Compositional matrix adjust. Identities = 144/470 (30%), Positives = 227/470 (48%), Gaps = 36/470 (7%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 MSV +V +DLR+ DN L AA ++D +V+ +F+ R + + F+ L Sbjct: 1 MSVAVVLFTSDLRLHDNPVLRAALRDAD-EVVPLFVRDDAVHRAGFDAPNRLAFLADCLA 59 Query: 67 QVQKSLSQKG---IVFQYHQCSNFDDSIEWLDS--YCLQQRVTKLFYNRQYEINEVRRDK 121 + L +G IV + + E + + V++ R+ I E D Sbjct: 60 ALDAGLRHRGGRLIVRRGEAATEVRRVAEETGAARVHIAAGVSRYAARREQRIREALADT 119 Query: 122 LLEKRLQHRVICKSFDDSVLLPPGSIL-NHALQMYKVYTPFRKALIQNLVQADL---RSL 177 E + V+ L PG ++ + V+TP+ + V+ L R++ Sbjct: 120 GRELHVHDAVVTA-------LAPGRVVPTGGKDHFAVFTPYFRRWEAEGVRGTLTAPRTV 172 Query: 178 PVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFP-IGEQNALHILRKFCKEKVYYYVEQRDI 236 VP + P+ + + + P GE+ ++ + + Y + D Sbjct: 173 RVPDGVASDPLPDRD-------SVENLSPGLARGGEEAGRKLVTSWLNGPMADYEDGHDD 225 Query: 237 PAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMA 296 A TS+LSP+L G +S + +R +E K G +++ +L WR+F+ ++A Sbjct: 226 LAGDATSRLSPHLHFGTVSAAELVHRARE-------KGGLGGEAFVRQLAWRDFHHQVLA 278 Query: 297 FYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMI 356 P + P ++ W D+ + AWK G TG+P++DAAMRQL GWMHNR RM+ Sbjct: 279 DRPDASWSD-YRPRHDR--WRSDADEIDAWKSGLTGYPLVDAAMRQLAHEGWMHNRARML 335 Query: 357 TASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGK 416 ASFL K L VDWR+G +F+ L+DGD+A+N WQW A TG D+ P R+ NP IQGK Sbjct: 336 AASFLTKTLYVDWRVGARHFLDLLVDGDVANNQLNWQWVAGTGTDTRPN-RVLNPVIQGK 394 Query: 417 RFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKA 466 RFD +G ++R W+PEL V IH P + +L+YP P+VD +A Sbjct: 395 RFDARGDYVRRWVPELAEVEGSAIHEPWKLQGLDRAALDYPDPVVDLAEA 444 >gi|294011743|ref|YP_003545203.1| deoxyribodipyrimidine photo-lyase [Sphingobium japonicum UT26S] gi|292675073|dbj|BAI96591.1| deoxyribodipyrimidine photo-lyase [Sphingobium japonicum UT26S] Length = 500 Score = 216 bits (549), Expect = 8e-54, Method: Compositional matrix adjust. Identities = 158/484 (32%), Positives = 232/484 (47%), Gaps = 56/484 (11%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFI---ATPEQWRQHGISARQSHFIYASLLQ 67 L+W R DLR+ D AL AA + VI +++ P QW+ G S +++ SL Sbjct: 38 LLWFRQDLRLADQAALGAAVQ--EGPVIPLYVLDDQAPRQWKMGGAS---RWWLHHSLRS 92 Query: 68 VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127 + L +KG Q N D I + +RV L + YE +K L KRL Sbjct: 93 LDDDLRKKGSRLVLRQ-GNCVDQIVQIAEETGARRVHALHH---YEPWWRNAEKALGKRL 148 Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187 +C D ++LLPPG++ Y++YTPF +A++ ++ A+ P R+ Sbjct: 149 D---LCL-HDGALLLPPGAVRTGGGNSYRIYTPFARAVMDHMPPAEPVRAPS---RID-- 199 Query: 188 VTPSNIPRFFDYPFQAIDPMFPI-----------GEQNALHILRKFCKEKVYYYVEQRDI 236 P P+ + P P GE A + F E Y R++ Sbjct: 200 -APGQWPKGDSLDRWGLLPTAPDWAAAFSRDWTPGEAGARANVAAFLDEAADYD-RARNL 257 Query: 237 PAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHL-- 294 P+ +G+S+LSP+L G +SP Q W ++ A ++L ELIWR+ Y H Sbjct: 258 PSREGSSRLSPHLHFGEVSPAQVWRQVA--------GAPGNATTFLKELIWRD-YAHTQI 308 Query: 295 --MAFYPSVCMGKPF--IPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMH 350 M Y S F +PW + E D AWK G TG+PI+DA MRQL T GWMH Sbjct: 309 WAMPAYGSENARPAFDAMPWRDLREAGVD---FTAWKTGRTGYPIVDAGMRQLWTTGWMH 365 Query: 351 NRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFN 410 NR+RMI ASFL+K LL+DWR G +F L+D A+N+ WQW A +G D+ + RI Sbjct: 366 NRVRMIAASFLIKHLLIDWRHGARWFWDTLVDASYANNSVNWQWVAGSGVDANIFSRIMA 425 Query: 411 PTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHT 470 P Q ++F+ +IR W+PEL ++ IH P + + +YP +DH++ Sbjct: 426 PLTQSEKFE-AADYIRKWVPELAHLNDDVIHDPEA---HDARPADYPAKCIDHREGRERA 481 Query: 471 LNQY 474 L + Sbjct: 482 LAAW 485 >gi|326780339|ref|ZP_08239604.1| Deoxyribodipyrimidine photo-lyase [Streptomyces cf. griseus XylebKG-1] gi|326660672|gb|EGE45518.1| Deoxyribodipyrimidine photo-lyase [Streptomyces cf. griseus XylebKG-1] Length = 455 Score = 216 bits (549), Expect = 9e-54, Method: Compositional matrix adjust. Identities = 144/470 (30%), Positives = 227/470 (48%), Gaps = 36/470 (7%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 MSV +V +DLR+ DN L AA ++D +V+ +F+ R + + F+ L Sbjct: 1 MSVAVVLFTSDLRLHDNPVLRAALRDAD-EVVPLFVRDDAVHRAGFDAPNRLAFLADCLA 59 Query: 67 QVQKSLSQKG---IVFQYHQCSNFDDSIEWLDS--YCLQQRVTKLFYNRQYEINEVRRDK 121 + L +G IV + + E + + V++ R+ I E D Sbjct: 60 ALDAGLRHRGGRLIVRRGEAATEVRRVAEETGAARVHIAAGVSRYAARREQRIREALADT 119 Query: 122 LLEKRLQHRVICKSFDDSVLLPPGSIL-NHALQMYKVYTPFRKALIQNLVQADL---RSL 177 E + V+ L PG ++ + V+TP+ + V+ L R++ Sbjct: 120 GRELHVHDAVVTA-------LAPGRVVPTGGKDHFAVFTPYFRRWEAEGVRGTLTAPRTV 172 Query: 178 PVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFP-IGEQNALHILRKFCKEKVYYYVEQRDI 236 VP + P+ + + + P GE+ ++ + + Y + D Sbjct: 173 RVPDGVASDPLPDRD-------SVKNLSPGLARGGEEAGRKLVTSWLNGPMADYEDGHDD 225 Query: 237 PAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMA 296 A TS+LSP+L G +S + +R +E K G +++ +L WR+F+ ++A Sbjct: 226 LAGDATSRLSPHLHFGTVSAAELVHRARE-------KGGLGGEAFVRQLAWRDFHHQVLA 278 Query: 297 FYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMI 356 P + P ++ W D+ + AWK G TG+P++DAAMRQL GWMHNR RM+ Sbjct: 279 DRPDASWSD-YRPRHDR--WRSDADEIDAWKSGLTGYPLVDAAMRQLAHEGWMHNRARML 335 Query: 357 TASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGK 416 ASFL K L VDWR+G +F+ L+DGD+A+N WQW A TG D+ P R+ NP IQGK Sbjct: 336 AASFLTKTLYVDWRVGARHFLDLLVDGDVANNQLNWQWVAGTGTDTRPN-RVLNPVIQGK 394 Query: 417 RFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKA 466 RFD +G ++R W+PEL V IH P + +L+YP P+VD +A Sbjct: 395 RFDARGDYVRRWVPELAEVEGSAIHEPWKLQGLDRAALDYPDPVVDLAEA 444 >gi|254438207|ref|ZP_05051701.1| deoxyribodipyrimidine photolyase family [Octadecabacter antarcticus 307] gi|198253653|gb|EDY77967.1| deoxyribodipyrimidine photolyase family [Octadecabacter antarcticus 307] Length = 533 Score = 216 bits (549), Expect = 9e-54, Method: Compositional matrix adjust. Identities = 158/484 (32%), Positives = 224/484 (46%), Gaps = 44/484 (9%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISAR----QSHFIYASLL 66 + W+R D RI DN AL AAC VI VFI E HG + + + ++ + L Sbjct: 69 IYWVRRDFRIGDNAALSAACATGR-PVIPVFICD-EVVESHGAAPKFRLGEGVRVFGAAL 126 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 V S +V + D++ L Q T +++NR Y+ RD ++ Sbjct: 127 AVVGSR----LVLRR------GDALAVLREVVAQTGATGVYWNRLYDPASKARDTGVKAA 176 Query: 127 LQ-HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185 L+ V SF +L P ++ Y+V+TP K + V +P PA Sbjct: 177 LKADGVEVASFTGHLLFEPWTVETKTGGFYRVFTPLWKTVRGRDVAT---PIPAPASVPA 233 Query: 186 GPVTPSNIPRFFDYPFQA--------IDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIP 237 V P++ R D+ A + +GE A L F + +V Y RD+P Sbjct: 234 PDVWPTS-DRLDDWALGAAMVRGRDVLAAHICVGEAAARTRLETFIEGRVQSYQTNRDLP 292 Query: 238 AIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAF 297 + GTS+LS L+ G +SP CW+ + K A + EL+WREF HL+ Sbjct: 293 GVDGTSRLSENLTYGEISPAVCWH----AGWAAIHSGKGQAEIFCKELVWREFAYHLVHH 348 Query: 298 YPSVCMGKPFIPWTEKIEWN-KDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMI 356 P + W + WN +D+ + AWKQG TG +DAAMR++ G MHNR RMI Sbjct: 349 TPHIVDRNWKEGW-DSFPWNTEDTAEVIAWKQGRTGIAFVDAAMREMYVSGTMHNRGRMI 407 Query: 357 TASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGK 416 AS+L K L+ W++G+ +F L D D ASN GWQWAA +G D+ PYFR+FNP Q Sbjct: 408 VASYLTKHLMTHWKVGQAWFDDCLTDWDPASNAMGWQWAAGSGPDAAPYFRVFNPVTQLD 467 Query: 417 RFDPQGTFIRHWLPELN----NVPTQYIHA-PHSW-LDKNDLSLNYPLPIVDHKKACHHT 470 +FD G + R W+ E + Y A P +W L D YP P+VD Sbjct: 468 KFDRAGLYARTWIAEGQGDAPDTALSYFDAIPKNWGLAATD---QYPAPVVDMATGRQRA 524 Query: 471 LNQY 474 L Y Sbjct: 525 LEAY 528 >gi|330835507|ref|YP_004410235.1| deoxyribodipyrimidine photo-lyase type I [Metallosphaera cuprina Ar-4] gi|329567646|gb|AEB95751.1| deoxyribodipyrimidine photo-lyase type I [Metallosphaera cuprina Ar-4] Length = 433 Score = 215 bits (548), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 152/475 (32%), Positives = 240/475 (50%), Gaps = 47/475 (9%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGI-SARQSHFIYASLLQ 67 + L R DLR+ DN L A D +V+ +FI P Q + S F+ SLL+ Sbjct: 2 ICLFLFRRDLRLEDNTCLIKALRECD-EVVPLFIIDPRQVEDNPYKSPFAIGFMIDSLLE 60 Query: 68 VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127 + + L G + H F + I + ++ N Y +RD+ +++++ Sbjct: 61 LDQDLKTMGS--RLHLLKGFPEEI------IPKINADAVYMNEDYTPFSRQRDERIKEKV 112 Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187 + +++ + +LL + Y V+T F ++ +R V ++ G Sbjct: 113 KGKLVTC---EDLLLTKKRFFLKEGKPYSVFTRF----YVDVKDKPVRRPEVNNLKNYGE 165 Query: 188 VTP-SNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246 + +++ + FQ F G + AL L + + + Y + R+ P + GT++LS Sbjct: 166 MKDITDVKLLENLHFQR--SSFKGGRRAALDTLNR--AQTIDYSL--RNFPGLPGTTRLS 219 Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP 306 PYL GVLSPR+ + + EE +L WR+F+ L+A+Y G Sbjct: 220 PYLKFGVLSPREVYYSVNEEI--------------RRQLYWRDFF-TLLAYYNPYVFGHA 264 Query: 307 FIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLL 366 + + + W D++L AW QG TG+PI+DA MR+LN G+MHNR RMITA FLVK L Sbjct: 265 YKREYDCVPWVNDTNLFSAWTQGKTGYPIVDAGMRELNNTGFMHNRTRMITAFFLVKVLH 324 Query: 367 VDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIR 426 VDWR GE+YF ++L+D D + NNG WQW ASTG D + FRIFNP +Q K+FDP+ +I+ Sbjct: 325 VDWRWGEKYFATKLVDYDPSVNNGNWQWVASTGVDRM--FRIFNPWLQQKKFDPEAVYIK 382 Query: 427 HWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481 W+PEL ++ IH ++ K D YP PIV++ + +YY + + Sbjct: 383 EWVPELRDLSPADIHNVYAL--KVD---GYPKPIVNYLEEVRKA-REYYEKSRST 431 >gi|297565815|ref|YP_003684787.1| Deoxyribodipyrimidine photo-lyase [Meiothermus silvanus DSM 9946] gi|296850264|gb|ADH63279.1| Deoxyribodipyrimidine photo-lyase [Meiothermus silvanus DSM 9946] Length = 435 Score = 215 bits (547), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 144/442 (32%), Positives = 217/442 (49%), Gaps = 41/442 (9%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 ++LVW R DLR D+ ALY A + ++ + P S R+ + YA+ + Sbjct: 1 MNLVWHRADLRTHDHPALYQAAQSG--PLVGLVNLDPHILEP--TSPRRRAWFYANTQAL 56 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128 +++ +++G + E L + V ++F Y + RD E+ + Sbjct: 57 REAYARRGGTL----LVRYGTPWEVLPQVVAELGVQRVFAIASYTPYGLHRDHKTEQAIP 112 Query: 129 HRV-ICKSFDDSVLLPPGSILNHALQMYKVYTPFRK---ALIQNLVQADLRSLPVPAIRL 184 R+ C+ + + PPG +L Y VYTP+ K + L + L PA+ Sbjct: 113 GRIHWCEG---NHVQPPGRLLKPDGTPYTVYTPYAKRWWGEAERLGEGLLPPGRFPALER 169 Query: 185 TG------PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPA 238 P PS++P + P GE+ AL L F ++++ Y + RD Sbjct: 170 PDLELGQVPQEPSDVP------------LPPPGEEAALQALEAFLRDRLPTYHQTRDRLD 217 Query: 239 IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFY 298 QG S+LSPY ++GVLSPR +R L GA W+ EL WR+F L+ Sbjct: 218 GQGGSRLSPYFTLGVLSPRLAVHRA-------LHIGGEGARKWVAELAWRDFSADLLYHR 270 Query: 299 PSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITA 358 P + + + F P + + W D L +AWK G TG ++DAAMR+LN G+M NR RM A Sbjct: 271 PQM-LHQSFDPRWDGLPWVDDPELFEAWKAGETGIALVDAAMRELNATGFMSNRARMAVA 329 Query: 359 SFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRF 418 F VK L+ W+ E++F ++LLDGD ASN GWQWA G D+ PYFR+FN Q + Sbjct: 330 QFAVKLALLPWQKAEQHFKNRLLDGDTASNLQGWQWAGGLGVDAAPYFRVFNLERQVAQH 389 Query: 419 DPQGTFIRHWLPELNNVPTQYI 440 DP+G +++ WLPE P Q + Sbjct: 390 DPEGVWLKRWLPEWGGPPVQPV 411 >gi|50306241|ref|XP_453092.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140] gi|49642226|emb|CAH00188.1| KLLA0D00462p [Kluyveromyces lactis] Length = 595 Score = 214 bits (546), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 151/503 (30%), Positives = 236/503 (46%), Gaps = 77/503 (15%) Query: 13 WLRNDLRITDNKAL-YAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQKS 71 W R DLR+ DN L YA + V A+++ W H S + F +L + + Sbjct: 75 WFRGDLRVRDNTGLAYALNQSKSGSVEALYVINEHDWIAHMESGWKLKFQLDALRSLSRE 134 Query: 72 LSQKGIVFQYHQ-------CSNFDDSIEWLDSYCLQQRVTKLFY---------------- 108 L++ G+ SN + +W S+ +++ Y Sbjct: 135 LAKLGVRLHVKYFIPESPCLSNSREYAQWF-SHIIEEIAASKNYDGNSKDDTKDDTDADE 193 Query: 109 -------------------------NRQYEINEVRRDKLLEKRLQHR------VICKSFD 137 N QYE++E+ RD L RLQ + K F Sbjct: 194 PALKKRKKDNDENQKGGSPNILVTANLQYEVDELYRD-LKICRLQTQSSNSANFTLKLFH 252 Query: 138 DSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP-------VTP 190 D ++ PG + Y ++TP+ K + + ++A+ + I + P V P Sbjct: 253 DMCIIEPGILKTGKGSQYTIFTPWYKKWV-SFLEANQKDKHTICIEASIPQSSNREKVNP 311 Query: 191 SNI----PRFF--DYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244 I P F + P Q ++ + E+ AL L +F ++ Y +D+ + GTS Sbjct: 312 EEIKYQLPDKFMSEMPEQTLN-IPKADEETALKKLTEFISKRASKYNNDKDLLDLTGTSL 370 Query: 245 LSPYLSIGVLSPR----QCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPS 300 LS Y++ GV+S R Q + ++ IK + +++ E+ WR+FY+H ++++P Sbjct: 371 LSCYVTSGVISARTILNQSYQANNSRLMNKDIKKNNSLETFIKEVAWRDFYKHAISYWPF 430 Query: 301 VCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASF 360 + M PF T I+W D L + W G TG PI+DA M ++ G+++NR RMITASF Sbjct: 431 LSMDLPFKFETLNIKWENDVFLFEKWCYGETGIPIVDAIMLKMLKTGYINNRSRMITASF 490 Query: 361 LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDP 420 L K+LL+DWR GE +F L+D D ASN GGW + ASTG D PYFR+FN +Q +++DP Sbjct: 491 LAKNLLIDWRWGERWFRKHLIDYDTASNVGGWGFCASTGIDCQPYFRVFNMKLQSEKYDP 550 Query: 421 QGTFIRHWLPELNNVPTQYIHAP 443 +G FIRHWL N + +H P Sbjct: 551 EGKFIRHWLENDEN-DSDNVHEP 572 >gi|323358558|ref|YP_004224954.1| deoxyribodipyrimidine photolyase [Microbacterium testaceum StLB037] gi|323274929|dbj|BAJ75074.1| deoxyribodipyrimidine photolyase [Microbacterium testaceum StLB037] Length = 456 Score = 214 bits (545), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 150/486 (30%), Positives = 233/486 (47%), Gaps = 58/486 (11%) Query: 8 SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67 S +VW R+DLR+TDN AL AA + + ++A+++ E I +++ SL Sbjct: 3 SPSVVWFRDDLRLTDNPALRAAL-DREEPIVALYLLDEESDGVRSIGGAARWWLHGSLAS 61 Query: 68 VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127 + + L ++G + + + + +F+NR+Y E D ++++L Sbjct: 62 LGERLEERGGRLVLRRGRAAEVVP----AVVEEVGAGAVFWNRRYGGVEREIDAGIKEKL 117 Query: 128 Q-HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIR--- 183 + V SF ++L P ++ A + Y VY+PF +A +Q L P+P R Sbjct: 118 RGDGVTVASFAANLLYEPWTVRTQADKPYGVYSPFARA-VQKLPAP---RPPMPEARKVP 173 Query: 184 -LTGPVTPSNIPRFFDYPFQ-----AIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIP 237 G V ++ + P + + + GE L++F + + Y + RD Sbjct: 174 GFDGHVDGDDLAAWDLLPTKPDWAGGLRETWEPGEPAGKARLKEFLDDDLGDYSKYRDEF 233 Query: 238 AIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSG-----AFSWLNELIWREFYR 292 A TS LSP L G LSP + W+ + + SG A +L+EL+WREF Sbjct: 234 AGGATSNLSPRLRWGELSPYEVWH-------ETIAHRGSGEHAQSASGFLSELVWREFAW 286 Query: 293 HLMAFYPSVCMGKPFIPWTEKIE---WNK-DSHLLQAWKQGYTGFPIIDAAMRQLNTIGW 348 H+ P + + W + W + + L+ W+QG TG ++DA MRQL G Sbjct: 287 HVTYHSPDIAT----VNWRRNFDAFPWPRLNRAHLETWQQGKTGVAVVDAGMRQLWHTGV 342 Query: 349 MHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRI 408 MHNR+RM+TASFL+K+LL+DWR GE++F L+D D ASN WQW A +G D+ PYFR+ Sbjct: 343 MHNRVRMVTASFLIKNLLIDWRHGEQWFWDCLVDADAASNPFNWQWVAGSGADAAPYFRV 402 Query: 409 FNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACH 468 FNP Q K+FDP ++R W PE L N P P+VD + Sbjct: 403 FNPDTQRKKFDPHDAYVREWAPEY-------------------LGENPPEPMVDLGETRK 443 Query: 469 HTLNQY 474 L+ Y Sbjct: 444 RALDAY 449 >gi|118364198|ref|XP_001015321.1| FAD binding domain of DNA photolyase family protein [Tetrahymena thermophila] gi|89297088|gb|EAR95076.1| FAD binding domain of DNA photolyase family protein [Tetrahymena thermophila SB210] Length = 472 Score = 214 bits (545), Expect = 3e-53, Method: Compositional matrix adjust. Identities = 142/432 (32%), Positives = 218/432 (50%), Gaps = 37/432 (8%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQ-HGISARQSHFIYASLLQ 67 V+L W R DLR+ DN LY A S V+ +FI + + + FI+ L Q Sbjct: 18 VNLFWFRRDLRLFDNVGLYHALKES-IPVVPLFIFDKDILNELEDKKDCRVEFIHNYLSQ 76 Query: 68 VQKSLSQKG---IVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLE 124 +Q +L + G +V + S F +E D C+ F NR YE +RD+ ++ Sbjct: 77 MQDNLRKHGSTMVVKHSNAESAFKSLMEEFDISCV-------FTNRDYEPYAKKRDQQIK 129 Query: 125 KRLQHRVIC-KSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIR 183 + L + I K F D V+ + +KVYTPF K I L + D +S ++ Sbjct: 130 EILNSKGIGFKDFKDQVIFEAKEVHQDDGSAFKVYTPFSKKWISLLSEPDYQSYKSESLM 189 Query: 184 LTGPVTPSNIP--RFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQG 241 + +P FQ FP + + +E V Y + RD P I+ Sbjct: 190 NNYWKSQVEVPFPTLEQIGFQKTGIEFPPSQLD---------EELVKNYDKTRDYPHIK- 239 Query: 242 TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSV 301 TS +S +L G +S R+ + +L+ K +L+EL WREF+ ++ +P + Sbjct: 240 TSLMSVHLRFGTVSIRELVRKA------VLLNQK-----YLDELCWREFFMMMIDQFP-L 287 Query: 302 CMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFL 361 + F K+EW + +AW +G TG+P++DA MRQLN G++ N+LRMI ASFL Sbjct: 288 FATENFKKAYNKVEWRNNPEEFKAWCEGKTGYPLLDAGMRQLNKTGYLPNKLRMIAASFL 347 Query: 362 VKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQ 421 K+LL+DWR GE YF +L+D DLA+N GGWQW +G D PY R+ +P +Q K++DP Sbjct: 348 TKNLLIDWRWGERYFAQKLIDYDLAANVGGWQWVNGSGTDQAPYIRVLDPVMQQKKYDPD 407 Query: 422 GTFIRHWLPELN 433 +++ W+ + N Sbjct: 408 FKYVKTWVEDFN 419 >gi|332520706|ref|ZP_08397168.1| Deoxyribodipyrimidine photo-lyase [Lacinutrix algicola 5H-3-7-4] gi|332044059|gb|EGI80254.1| Deoxyribodipyrimidine photo-lyase [Lacinutrix algicola 5H-3-7-4] Length = 434 Score = 214 bits (544), Expect = 3e-53, Method: Compositional matrix adjust. Identities = 140/475 (29%), Positives = 222/475 (46%), Gaps = 47/475 (9%) Query: 6 AMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASL 65 + +V++ W R DLR+ DN + A ++ V+ +FI E + + + FI+ +L Sbjct: 2 SKTVNIFWFRRDLRLDDNVGFFEALK-AEHPVLPIFIFDSEILDELPENDARVSFIFETL 60 Query: 66 LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125 ++++L + + I+ S + ++ N YE RD ++ Sbjct: 61 QNMRQTLQDEN---NSSLAMFYGKPIDIYKSLIKDYNINTVYTNHDYEPYAKERDSEIQS 117 Query: 126 RLQ-HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL 184 L+ +++ K++ D V+ ++ + Y VYTP+ K DL+ L Sbjct: 118 FLEENKINFKTYKDQVIFEKNEVVKDDGKPYVVYTPYMKKWKAKFKDYDLKIYYTNTF-L 176 Query: 185 TGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEK--VYYYVEQRDIPAIQGT 242 + + +P + IG + + ++ + + Y R+ PA T Sbjct: 177 NNLIENTRLPNL---------SLSDIGFKKSSQDIKDYTVTPTLIQEYEATRNFPAKDTT 227 Query: 243 SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVC 302 S+L P+L G +S R+ + E ++ W ELIWREF+ ++ +P Sbjct: 228 SRLGPHLRFGTVSVRKMVKKATAENNEIF---------W-QELIWREFFMQILWHFPD-T 276 Query: 303 MGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLV 362 F + I+W ++ +AW G TG+P++DA MRQLN G+MHNR+RM+ SFL Sbjct: 277 HKDAFKAKYDNIKWRNNNKEFKAWCDGKTGYPLVDAGMRQLNQTGFMHNRVRMLVGSFLC 336 Query: 363 KDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQG 422 K LL+DWR GE YF +L D D+ASN G WQW A +G D+ PYFRIFNPT Q +FD Sbjct: 337 KHLLIDWRKGEAYFAQKLHDYDMASNVGNWQWVAGSGVDASPYFRIFNPTTQIDKFDKDK 396 Query: 423 TFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477 +I+ W+PE DK YP IVDHK+A L Y A Sbjct: 397 KYIKQWIPEFGT-------------DK------YPEKIVDHKEARERCLKVYKDA 432 >gi|254776317|ref|ZP_05217833.1| Phr protein [Mycobacterium avium subsp. avium ATCC 25291] Length = 442 Score = 213 bits (543), Expect = 4e-53, Method: Compositional matrix adjust. Identities = 150/474 (31%), Positives = 227/474 (47%), Gaps = 48/474 (10%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 L+W R DLR+ D+ AL AA +SD +V+A F+ P R G R+ F+ SL ++ Sbjct: 4 LLWFRRDLRLHDHPALSAAA-DSD-EVLACFVLDPRLQRSSG--PRRLQFLGDSLRVLRD 59 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130 L + +V + + + + + + + + + RRD + L Sbjct: 60 ELDGRLLVTRGRPDIRIPEIAKAIGA-------SSVHVSEDFTPFGKRRDARVRAALAS- 111 Query: 131 VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP--- 187 V + L+ PG + Y+V+TPF + + ++ A R P Sbjct: 112 VPLVATGSPYLVAPGRVTKPDGSPYQVFTPFLRRWRDTGWRPPAKTGAASA-RWLDPARL 170 Query: 188 -VTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246 +T IP P +D GE A + + F + Y + R P I+GTS++S Sbjct: 171 GITACEIPD----PGATLD--LAAGEAAARNQWKTFVDNGLANYADDRHRPDIEGTSRMS 224 Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP 306 ++ G + PR DL ++ +GA ++L EL +R+FY ++ P+ Sbjct: 225 AHVKFGTIHPRTL-------VADLDLR-AAGARTYLRELAFRDFYADVLHHRPASA---- 272 Query: 307 FIPWTEKIE------WNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASF 360 + W + ++ +AWK G TGFP +DA MRQL G+MHNR+RM ASF Sbjct: 273 WRNWNSAFDAIRTDTGDEAGRRFEAWKAGETGFPFVDAGMRQLRQTGFMHNRVRMTVASF 332 Query: 361 LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDP 420 LVKDL + W+ G +F+ QL+DGDLA+N GWQW A G D+ PYFR+FNP QG++FDP Sbjct: 333 LVKDLHLPWQWGAHWFLQQLVDGDLANNQHGWQWCAGCGTDAAPYFRVFNPAAQGEKFDP 392 Query: 421 QGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQY 474 G +IR W+PEL + PH L + Y PIVDH L +Y Sbjct: 393 SGDYIRRWVPEL-----RCADDPH--LRTGERPPGYLAPIVDHATERAEALRRY 439 >gi|189184449|ref|YP_001938234.1| deoxyribodipyrimidine photolyase, DNA photolyase [Orientia tsutsugamushi str. Ikeda] gi|189181220|dbj|BAG41000.1| deoxyribodipyrimidine photolyase, DNA photolyase [Orientia tsutsugamushi str. Ikeda] Length = 505 Score = 213 bits (542), Expect = 5e-53, Method: Compositional matrix adjust. Identities = 153/511 (29%), Positives = 243/511 (47%), Gaps = 62/511 (12%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFI--ATPEQWRQHGISARQSHFIYASLL 66 + +VWLR +LR+ DNK +A S K+I +FI T Q + + R S F+ ++ Sbjct: 6 ISIVWLRRNLRLEDNKP-FAEALKSSKKIIPIFIFDTTILQNFSNPLDRRLS-FLANTIY 63 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 + L + + + + +S+E + + + ++ + +Y+ V RD+ + Sbjct: 64 NLNSELQE----LEGNLLVLYGNSVEIIPKLIEKLNIQTIYADEEYDPENVIRDQKITNL 119 Query: 127 LQH------RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQ------------- 167 L+ ++C D +LL PGSI+ H Q Y Y P+ A Q Sbjct: 120 LEFNGKSKLELVC----DHLLLKPGSIVTHKKQYYMRYNPYNTAFKQYLRKNCSCIERSN 175 Query: 168 --------NLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHIL 219 +L DL SL + I L S I Y +Q + PI +N IL Sbjct: 176 YRLDHRLVSLESIDLSSLNLKIINLNHGA--SEILNQIGYTYQKDNIWQPIKAKN---IL 230 Query: 220 RKFCKEKVYYYVEQ---RDIPAIQGTSQLSPYLSIGVLSPRQCWNRL-----KEEFVDLL 271 F + + Y +++ + +S +SPYL G++S R+C+++ K D Sbjct: 231 NNFIQNNITSYRTNNTNQNLLYLNNSSTISPYLRFGLVSIRECFSKAIAADSKALITDEA 290 Query: 272 IKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYT 331 I W++ LI REFY L+ +P+ + + I W KD + + +G T Sbjct: 291 IGKTEKEKGWIDGLIHREFYASLLFRFPNTVSEEFQDKYRNNIPWEKDLEIYCKFTEGKT 350 Query: 332 GFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGG 391 G+P+IDA+++QL GWMHN R I A+F K LL+DWR+GE +F L+D +LASN G Sbjct: 351 GYPMIDASIKQLLRDGWMHNLARTIVANFFTKYLLLDWRLGEHFFSQYLMDYELASNVGS 410 Query: 392 WQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND 451 WQWAAS G D + R+F P QG++FD + +I+ +LP L NV + IH H Sbjct: 411 WQWAASCGTDMEHFVRMFCPFAQGRKFDHEAKYIKKYLPNLENVSAKVIHDVH------- 463 Query: 452 LSLNYP---LPIVDHKKACHHTLNQYYAAKK 479 S YP PI+D++ + + N + KK Sbjct: 464 FSKKYPNYLTPIIDYQLSKDKSSNFFKQIKK 494 >gi|25027203|ref|NP_737257.1| deoxyribodipyrimidine photolyase [Corynebacterium efficiens YS-314] gi|23492484|dbj|BAC17457.1| deoxyribodipyrimidine photolyase [Corynebacterium efficiens YS-314] Length = 492 Score = 213 bits (542), Expect = 5e-53, Method: Compositional matrix adjust. Identities = 168/512 (32%), Positives = 231/512 (45%), Gaps = 70/512 (13%) Query: 1 MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHF 60 M +TA S +VW R+DLRI DN AL A VI +FI +Q R G +AR + Sbjct: 17 MSLSTA-SPTIVWFRDDLRIRDNAALAWAADR--GPVIGLFI-DEDQPRALGGAARW--W 70 Query: 61 IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120 SL + +L+ G+ D + L + + +NR+Y RD Sbjct: 71 RDRSLTLLVDALATHGVPLLRRSG----DPVVLLTEVVRETGAAAVTWNRRYHGPLRERD 126 Query: 121 KLLEKRLQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLR-SLP 178 ++ +L+ + + S +L P + + A YKVYTPF KA ++ R P Sbjct: 127 AEIKTQLREQGLEVHSHAGFLLTEPWEVTSGAGTGYKVYTPFSKAAFPLADESAARLGDP 186 Query: 179 VPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPI--------GEQNALHILRKFCKE--KVY 228 +PA +LTGP TP D P DP + GEQ AL L F + Sbjct: 187 MPA-QLTGPDTPVADTGGIDAP----DPFWAAEMATHCRPGEQAALDRLGDFLDRMRERG 241 Query: 229 YYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWR 288 Y + RD A TS LSP+L G +S + W + I + EL+WR Sbjct: 242 GYADGRDEMARAVTSGLSPHLRFGEISVHRVWEEITAAADAGDIDATDAQV-FRKELLWR 300 Query: 289 EFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSH----------------------LLQAW 326 +F H + P + + + W D H L AW Sbjct: 301 DFAWHRLYALPDMATTNVREQFN-RFGWAWDEHEAARLVDGRHPLSPTSSDEFHVALAAW 359 Query: 327 KQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLA 386 + G TG P++DA MR+L G MHNR RM+ ASFL K+L + WR GEE+F L+D D A Sbjct: 360 RAGRTGIPLVDAGMRELWATGSMHNRSRMVVASFLTKNLQIHWRHGEEWFWETLVDADPA 419 Query: 387 SNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSW 446 SN WQWAA +G+D+ PYFRIFNP Q ++FDP T+IR W+PE Sbjct: 420 SNAFNWQWAAGSGDDASPYFRIFNPETQARKFDPDETYIRRWIPEYG------------- 466 Query: 447 LDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478 + YP PIVD K++ L+ Y A K Sbjct: 467 ------TPEYPAPIVDLKESRREALDAYEAVK 492 >gi|126726813|ref|ZP_01742652.1| deoxyribodipyrimidine photolyase [Rhodobacterales bacterium HTCC2150] gi|126703771|gb|EBA02865.1| deoxyribodipyrimidine photolyase [Rhodobacterales bacterium HTCC2150] Length = 476 Score = 213 bits (542), Expect = 6e-53, Method: Compositional matrix adjust. Identities = 146/487 (29%), Positives = 236/487 (48%), Gaps = 42/487 (8%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 +V L +LR++D++ L AA S VI VFIA + + A+ + + Sbjct: 16 IVRLGRNLRLSDHQPLLAA-QQSGRPVIPVFIADDAFFALGAAPKWRFGLGLAAFSEQLE 74 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL-QH 129 + K ++ + S D I + + + + R Y+ + + RD ++ L + Sbjct: 75 KIGSKLLLRRGDVQSVLLDLIH-------ETQACAVLWERSYDPSSINRDTAIKMALGEE 127 Query: 130 RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189 ++ +SF ++L+ P I YKV+TPF + L Q ++ PA ++ V+ Sbjct: 128 GIVAQSFSGALLIEPWEIATKTGGFYKVFTPFWRNLHQMIIAP-------PASTVSNLVS 180 Query: 190 PSNIPRFFDYP-----------FQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPA 238 P++ P+ D + +GE+ A+ KF + Y ++RD PA Sbjct: 181 PTDWPKGEDIKDWQLGQGMMRGLDVVGDHICVGEKAAVDRCEKFLSDNCNEYNDKRDFPA 240 Query: 239 IQGTSQLSPYLSIGVLSPRQCWNRLKE--EFVDLLIKPKSGAFSWLNELIWREFYRHLMA 296 I TS+LS L+ G +SPR W+ ++ D+ + P ++ +L WR+F HL Sbjct: 241 IDATSKLSENLAYGEISPRLIWHLAQKVAHIDDVNVVP------FIRQLAWRDFAWHLTY 294 Query: 297 FYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMI 356 P + W + W + AW++G TG ++DAAMR+L G MHNR RMI Sbjct: 295 HTPHILDANWKAGW-DTFPWITKGPEVLAWQRGQTGIELVDAAMRELYVTGRMHNRARMI 353 Query: 357 TASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGK 416 AS+L K L+VDWR+G+E+F L+D DLA+N GWQW A TG D+ PYFR+FNP Q + Sbjct: 354 AASYLTKHLMVDWRVGQEWFGDTLVDMDLAANAMGWQWVAGTGPDASPYFRVFNPDGQAE 413 Query: 417 RFDPQGTFIRHWLPELNNVPTQYIH-APHSWLDKNDLSLNY-PLPIVDHKKACHHTLNQY 474 +FD + + WL + + Q+ AP SW ++ LN+ P P++ L Y Sbjct: 414 KFDKERKYRDFWLNPVQDGARQFAKAAPKSW----NIDLNHRPKPLISLADGRARALTAY 469 Query: 475 YAAKKQS 481 + KK Sbjct: 470 SSLKKSG 476 >gi|319442565|ref|ZP_07991721.1| deoxyribodipyrimidine photolyase [Corynebacterium variabile DSM 44702] Length = 492 Score = 213 bits (542), Expect = 6e-53, Method: Compositional matrix adjust. Identities = 167/516 (32%), Positives = 241/516 (46%), Gaps = 72/516 (13%) Query: 1 MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFI---ATPEQWRQHGISARQ 57 M +AM+ LVW R+DLR+ DN AL A +VIAV I A R G +A Sbjct: 1 MTDRSAMT--LVWFRDDLRLADNAALEWAAQGG--EVIAVVIDEDAAATGVRPRGAAA-- 54 Query: 58 SHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEV 117 S + SL Q+ L + G+ + D ++ + + V + +NR+YE Sbjct: 55 SWWRERSLSQLAGRLLEHGVPMLHLAG----DPVDIMTALPGLLAVDAVVWNRRYEEPLR 110 Query: 118 RRDKLLEKRLQ-HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKAL-------IQNL 169 D +++ LQ SF +L P + + Y+V+TP+ +A + L Sbjct: 111 FVDSRIKETLQAGGTEVHSFPGHLLTEPWQVTTGEGRPYRVFTPYSRAATPVAEDAVAQL 170 Query: 170 VQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPM---------FPIGEQNALHIL- 219 V+A + VPA L GP ++P P + +DP + GE+ L Sbjct: 171 VEAAAQ---VPA-DLRGPE--KDLPEVPFPPVRPVDPAPWAASLADHWTPGEEAGQATLA 224 Query: 220 ------RKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIK 273 R+ Y + RDIP T+ LSP+L G +SP + W + VD Sbjct: 225 AFVTGDRRTTATGSPGYADGRDIPDADATTGLSPHLRFGEVSPHRVWYAVARA-VDAGDV 283 Query: 274 PKSGAFSWLNELIWREFYRHLMAFYP---SVCMGKPFI--PWTEKIEWNKD-SHL----- 322 P + + +EL+WR+F + P S C+ + F PW D HL Sbjct: 284 PAADGSALHSELLWRDFAWQRLYHRPDLASRCVREQFTQFPWRWDNSLPGDVKHLGDATA 343 Query: 323 ----LQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMS 378 L AW+ G TG P++DA MR+L T GWMHNR+RM+ SFL K+LL DWR GE++F Sbjct: 344 LAQDLSAWRSGTTGIPLVDAGMRELWTTGWMHNRVRMVVGSFLTKNLLADWRHGEQWFWD 403 Query: 379 QLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQ 438 L+D D ASN WQW A G+D+ PYFRIFNP Q K+FDP+ ++ W+PE V + Sbjct: 404 TLVDADPASNPFNWQWVAGCGDDASPYFRIFNPETQRKKFDPELGYVNRWVPEF--VGPE 461 Query: 439 YIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQY 474 HA YP P+VD +++ L Y Sbjct: 462 AAHA-----------GPYPPPMVDLRESRQRALAAY 486 >gi|309811658|ref|ZP_07705437.1| putative deoxyribodipyrimidine photo-lyase [Dermacoccus sp. Ellin185] gi|308434459|gb|EFP58312.1| putative deoxyribodipyrimidine photo-lyase [Dermacoccus sp. Ellin185] Length = 463 Score = 213 bits (541), Expect = 7e-53, Method: Compositional matrix adjust. Identities = 150/467 (32%), Positives = 219/467 (46%), Gaps = 67/467 (14%) Query: 11 LVWLRNDLRITDNKALYAAC---------HNSD-------AKVIAVFIATPEQWRQHGIS 54 LVW R+DLR D+ AL AA SD A V+A+F+ E + Sbjct: 4 LVWFRDDLRTFDHPALRAAVDHAVTSQGSQESDDGASSEPAGVVALFVLDEESDGLRPLG 63 Query: 55 ARQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEI 114 +++ SL+ ++ L GI + + D ++ ++++ V + +NR+Y Sbjct: 64 GAVKWWLHHSLVALRAKLEALGIPLVLRRGAAHDVVLDVVETF----DVDFVGWNRRYGG 119 Query: 115 NEVRRDKLLEKRLQHR-VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQAD 173 E D ++ R V S+ ++L P +I Y+V+TPF KA + Sbjct: 120 PERVVDAGIKAAFAERDVEVHSYAANLLFEPWTITTGGGTPYRVFTPFWKACL------- 172 Query: 174 LRSLPVPAIRLTGPVTPSNIPRFFDYPFQAID--------PMFPI-----------GEQN 214 S P P L P + + QA D P P GE Sbjct: 173 --SEPQPREPLDAPSALTPPSALVEQAGQASDDLDTWALLPTKPDWSTGIAKAWTPGEDA 230 Query: 215 ALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKP 274 A +L F + V +Y QRD P+ TS+LSP+L G +SP+ W+ + D+ Sbjct: 231 AHELLADFLDDAVVHYATQRDEPSKPATSRLSPHLRFGEISPQTIWHAARRSGKDVE--- 287 Query: 275 KSGAFSWLNELIWREFYRHLMAFYPS---VCMGKPF--IPWTEKIEWNKDSHLLQAWKQG 329 ++L+E+ WREF H + P V + + F PW D L AW++G Sbjct: 288 -----TFLSEVGWREFAWHTLYDNPDLHEVNLNRKFDAFPWPPL-----DEDALLAWEKG 337 Query: 330 YTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNN 389 TG P++DA MR+L G MHNR+RM+ ASFL K+LL+DWRIGEE+F L+D D ASN Sbjct: 338 ETGVPLVDAGMRELWETGTMHNRVRMVVASFLTKNLLIDWRIGEEWFWDTLVDADAASNP 397 Query: 390 GGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVP 436 WQW A G D+ PYFR+FNP Q K+FDP ++R W + P Sbjct: 398 FNWQWVAGCGADAAPYFRVFNPETQRKKFDPDERYVRRWGADDGREP 444 >gi|259506660|ref|ZP_05749562.1| deoxyribodipyrimidine photolyase [Corynebacterium efficiens YS-314] gi|259165744|gb|EEW50298.1| deoxyribodipyrimidine photolyase [Corynebacterium efficiens YS-314] Length = 476 Score = 213 bits (541), Expect = 7e-53, Method: Compositional matrix adjust. Identities = 168/512 (32%), Positives = 231/512 (45%), Gaps = 70/512 (13%) Query: 1 MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHF 60 M +TA S +VW R+DLRI DN AL A VI +FI +Q R G +AR + Sbjct: 1 MSLSTA-SPTIVWFRDDLRIRDNAALAWAADR--GPVIGLFI-DEDQPRALGGAARW--W 54 Query: 61 IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120 SL + +L+ G+ D + L + + +NR+Y RD Sbjct: 55 RDRSLTLLVDALATHGVPLLRRSG----DPVVLLTEVVRETGAAAVTWNRRYHGPLRERD 110 Query: 121 KLLEKRLQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLR-SLP 178 ++ +L+ + + S +L P + + A YKVYTPF KA ++ R P Sbjct: 111 AEIKTQLREQGLEVHSHAGFLLTEPWEVTSGAGTGYKVYTPFSKAAFPLADESAARLGDP 170 Query: 179 VPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPI--------GEQNALHILRKFCKE--KVY 228 +PA +LTGP TP D P DP + GEQ AL L F + Sbjct: 171 MPA-QLTGPDTPVADTGGIDAP----DPFWAAEMATHCRPGEQAALDRLGDFLDRMRERG 225 Query: 229 YYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWR 288 Y + RD A TS LSP+L G +S + W + I + EL+WR Sbjct: 226 GYADGRDEMARAVTSGLSPHLRFGEISVHRVWEEITAAADAGDIDATDAQV-FRKELLWR 284 Query: 289 EFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSH----------------------LLQAW 326 +F H + P + + + W D H L AW Sbjct: 285 DFAWHRLYALPDMATTNVREQFN-RFGWAWDEHEAARLVDGRHPLSPTSSDEFHVALAAW 343 Query: 327 KQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLA 386 + G TG P++DA MR+L G MHNR RM+ ASFL K+L + WR GEE+F L+D D A Sbjct: 344 RAGRTGIPLVDAGMRELWATGSMHNRSRMVVASFLTKNLQIHWRHGEEWFWETLVDADPA 403 Query: 387 SNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSW 446 SN WQWAA +G+D+ PYFRIFNP Q ++FDP T+IR W+PE Sbjct: 404 SNAFNWQWAAGSGDDASPYFRIFNPETQARKFDPDETYIRRWIPEYG------------- 450 Query: 447 LDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478 + YP PIVD K++ L+ Y A K Sbjct: 451 ------TPEYPAPIVDLKESRREALDAYEAVK 476 >gi|206603959|gb|EDZ40439.1| Deoxyribodipyrimidine photolyase [Leptospirillum sp. Group II '5-way CG'] Length = 534 Score = 213 bits (541), Expect = 8e-53, Method: Compositional matrix adjust. Identities = 152/478 (31%), Positives = 232/478 (48%), Gaps = 34/478 (7%) Query: 2 KATTAMSVHL---VWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQS 58 +A T H+ VW RN+LR+ DN L A ++ VF+ +Q ARQ Sbjct: 51 EAPTKTEAHISSIVWFRNNLRLLDNPPLREAAER--GPLLPVFVGE-HPGKQPPEGARQ- 106 Query: 59 HFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVR 118 + SL ++ SLS++G + + D L + + K+ + + R Sbjct: 107 WWQARSLRRLDHSLSRRGAPLLFLRG----DPATLLPDLATRLKADKILAMEAIDPDGRR 162 Query: 119 RDKLLEKRLQHR-VICKSFDDSVLLPPGSILNHALQMYKVYTPF-------RKALIQNLV 170 L+ L + V F L+ P + +KV+TPF + Sbjct: 163 TQSRLQGALSGKPVELHLFPADYLISPADLPAGRRSPWKVFTPFWQRAQSHLPPPLPLPA 222 Query: 171 QADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYY 230 L +P P R P P D+ + + + GE+ A L F ++++ Y Sbjct: 223 PDRLDGIPFP--RTETPDDWGWEPENPDWATE-MRGFWDPGEEGAWRRLHAFLEKRLENY 279 Query: 231 VEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREF 290 +RD +S LSP+L+ G +S R W +KE P +L+EL WREF Sbjct: 280 RVRRDFLEEDTSSLLSPHLANGEISIRSVWWAIKES-----TAPDKDREKFLSELGWREF 334 Query: 291 YRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMH 350 HLM +P + + +I W +D L AW++G TG P++DA MRQL +G++ Sbjct: 335 SAHLMWHHPDLASER-LHKERPEIRWREDPFSLLAWQKGRTGIPLVDAGMRQLRRLGFLP 393 Query: 351 NRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFN 410 NR+RM+ ASFLVK+LL+DWR G E+F L+D D A+N WQW + G D+ P+FRIFN Sbjct: 394 NRVRMVAASFLVKNLLIDWRKGREWFADNLVDHDPANNAASWQWISGYGADAAPWFRIFN 453 Query: 411 PTIQGKRFDPQGTFIRHWLPELNNVPTQYIH----APHSWLDKNDLSLNYPL--PIVD 462 P +QG++FDP+G +++ +LPEL+ + +YIH AP + LD + P PIVD Sbjct: 454 PVLQGEKFDPEGRYVKTYLPELHGLSPRYIHCPWTAPAALLDSAGIGEQSPYRNPIVD 511 >gi|307292892|ref|ZP_07572738.1| DNA photolyase FAD-binding [Sphingobium chlorophenolicum L-1] gi|306880958|gb|EFN12174.1| DNA photolyase FAD-binding [Sphingobium chlorophenolicum L-1] Length = 458 Score = 213 bits (541), Expect = 8e-53, Method: Compositional matrix adjust. Identities = 159/485 (32%), Positives = 237/485 (48%), Gaps = 50/485 (10%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFI---ATPEQWRQHGISARQSHFIYASLLQ 67 L+WLR DLR+ D AL AA + VI V++ P QW+ G S +++ SL Sbjct: 6 LLWLRQDLRLADQAALAAAVR--EGPVIPVYVLDDQAPRQWKMGGAS---RWWLHHSLAN 60 Query: 68 VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127 + SL +KG Q DS+E L + + ++ YE +K + KRL Sbjct: 61 LDASLREKGSRLILRQG----DSVEQLVAIAEEVGAGRVHALHHYEPWWRNAEKAVAKRL 116 Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187 +C D +LLPPG + Y++YTPF +A+++ + A P R+ P Sbjct: 117 D---LCL-HDGGLLLPPGVVRTGGGSSYRIYTPFARAVMEQMPPATPVRAPS---RIDAP 169 Query: 188 VTPSNIPRFFDYPFQAIDPMFPI--------GEQNALHILRKFCKEKVYYYVEQRDIPAI 239 D+ + P + + GE A + F E Y V R++P+ Sbjct: 170 SDWPKSDSLADWGLLPVKPDWAVAFSSDWTPGEAGARTNVAAFLDEAADYDV-ARNLPSQ 228 Query: 240 QGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHL----M 295 +GTS+LSP+L G +SP W+R+ + A ++L ELIWR+ Y H M Sbjct: 229 EGTSRLSPHLHFGEVSPAYVWHRI--------VGTGDDATTFLKELIWRD-YAHTQIWAM 279 Query: 296 AFYPSVCMGKPF--IPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRL 353 Y S F +PW + E +D +AW+ G TG+PI+DA MRQL GWMHNR+ Sbjct: 280 PTYGSENARPAFDAMPWRDLREAGED---FKAWQSGRTGYPIVDAGMRQLWATGWMHNRV 336 Query: 354 RMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTI 413 RMI ASFL+K LL+DWR G +F L+D A+N+ WQW A +G D+ + RI P Sbjct: 337 RMIAASFLIKHLLIDWRHGARWFWDTLVDASYANNSVNWQWVAGSGVDANIFSRIMAPLT 396 Query: 414 QGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQ 473 Q ++FD G +IR W+PEL ++ ++IH P + +YP + H++ L Sbjct: 397 QSEKFDAAG-YIRTWVPELAHLDDEHIHDPDA---HGIRPPDYPAKRIGHREGRERALAA 452 Query: 474 YYAAK 478 + K Sbjct: 453 WGHGK 457 >gi|70727202|ref|YP_254118.1| hypothetical protein SH2203 [Staphylococcus haemolyticus JCSC1435] gi|68447928|dbj|BAE05512.1| unnamed protein product [Staphylococcus haemolyticus JCSC1435] Length = 457 Score = 212 bits (540), Expect = 9e-53, Method: Compositional matrix adjust. Identities = 139/469 (29%), Positives = 234/469 (49%), Gaps = 29/469 (6%) Query: 12 VWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQKS 71 V L RI +N L+ H + + ++ P++ + + ++++ + + Sbjct: 5 VILNRVFRINNN-PLFEYIHQNKEDIEKCYLIIPQEIFEEDDTDMKANYYFGVMQSFLND 63 Query: 72 LSQKGI---VFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128 L Q I + Y +F D + ++ + + ++ Y+I ++ K K Sbjct: 64 LRQYDIEPFLLDYSDLGDFCDD-KSINEVIVAGDIMS-YHQESYDIRHLK--KAFNK--- 116 Query: 129 HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188 H + + + P + +N + YKV+T F KA L + D S L+ Sbjct: 117 HNITVTTVRANHYFKPSATMNKQGEPYKVFTSFYKAHRSKLRKHD--SYAYKLKDLSDLF 174 Query: 189 TPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPY 248 S DY F + E A+ + + + Y R+ TSQLS Sbjct: 175 VKSQQKLNQDYS------KFGLSESKAIKKWNDYIDQDIQNYETNREYLPEVLTSQLSII 228 Query: 249 LSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFI 308 L+ G++ +Q +L E + + + ++ EL++REFY LM YP+ + F Sbjct: 229 LAYGIIDIKQIVTQLLERYEE----DEHNIEQFIRELMFREFYYVLMTQYPNTA-HEAFN 283 Query: 309 PWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVD 368 I+W + ++W +G+TGFPI+DAAM +LN G+MHNR+RM+ + FL KDL +D Sbjct: 284 EKYRDIKWEYNKDEFKSWCEGHTGFPIVDAAMTELNQTGFMHNRMRMVVSQFLTKDLFID 343 Query: 369 WRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHW 428 W GE+YF +L+D D ASN GWQW+ASTG D+VPYFR+FNP+ Q +RFD +I+ + Sbjct: 344 WTWGEDYFRRKLIDFDSASNVHGWQWSASTGTDAVPYFRMFNPSRQSERFDKDALYIKTF 403 Query: 429 LPELNNVPTQYIHAP---HSWLDKNDLSL--NYPLPIVDHKKACHHTLN 472 +P+LN+V + +H P + L++ + L +YP P+VDHK+A H ++ Sbjct: 404 IPQLNDVTPKLLHEPINHEAELEQEGIKLGQDYPKPLVDHKEARDHVMS 452 >gi|223042734|ref|ZP_03612782.1| putative deoxyribodipyrimidine photolyase [Staphylococcus capitis SK14] gi|222443588|gb|EEE49685.1| putative deoxyribodipyrimidine photolyase [Staphylococcus capitis SK14] Length = 457 Score = 212 bits (540), Expect = 9e-53, Method: Compositional matrix adjust. Identities = 126/345 (36%), Positives = 186/345 (53%), Gaps = 24/345 (6%) Query: 142 LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPF 201 P N+ + YKV+T F K L++ + + + + G + + DY Sbjct: 129 FKPSKTRNNKGEPYKVFTSFYKKWRPYLMKRTVYNYDIKDLAKVGVKSKQKLKG--DYSQ 186 Query: 202 QAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWN 261 I E+ A + F + + Y R+ TSQLS YL+ GVL Q +N Sbjct: 187 SGI------SEETAQYKWSDFLDKDIEDYDSNREYLPEVLTSQLSIYLAYGVLDIIQIFN 240 Query: 262 RLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEK---IEWNK 318 L +D K + +++ ELI+REFY LM YP I + EK + W+ Sbjct: 241 DL----LDGYDKDEQNYEAFIRELIFREFYYVLMTQYPKTAH----IAFKEKYQNLNWSY 292 Query: 319 DSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMS 378 + WK+G TGFPIIDAAM +LNT G+MHNR+RM+ + FL KDL +DW GEEYF Sbjct: 293 NEDNFDLWKKGMTGFPIIDAAMGELNTTGYMHNRMRMVVSQFLTKDLFIDWTWGEEYFRQ 352 Query: 379 QLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQ 438 +L+D D ASN GWQW+ASTG D+VPYFR+FNP Q +RFD + +I+ ++P LN+V + Sbjct: 353 KLIDYDAASNVHGWQWSASTGTDAVPYFRMFNPVRQSERFDKKALYIKKFIPTLNDVDAK 412 Query: 439 YIHA--PHSWLDKN---DLSLNYPLPIVDHKKACHHTLNQYYAAK 478 Y+H H K +L +YP +V+H ++ H ++++ A + Sbjct: 413 YLHNTYKHERQIKEQGIELGKDYPKQMVNHSESRDHVMSEFKAME 457 >gi|130157|sp|P12768|PHR_STRGR RecName: Full=Deoxyribodipyrimidine photo-lyase; AltName: Full=DNA photolyase; AltName: Full=Photoreactivating enzyme gi|47083|emb|CAA33161.1| unnamed protein product [Streptomyces griseus] Length = 455 Score = 212 bits (540), Expect = 1e-52, Method: Compositional matrix adjust. Identities = 145/470 (30%), Positives = 225/470 (47%), Gaps = 36/470 (7%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 MSV +V +DLR+ DN L AA ++D +V+ +F+ R + F+ L Sbjct: 1 MSVAVVLFTSDLRLHDNPVLRAALRDAD-EVVPLFVRDDAVHRAGFDAPNPLAFLADCLA 59 Query: 67 QVQKSLSQKG---IVFQYHQCSNFDDSIEWLDS--YCLQQRVTKLFYNRQYEINEVRRDK 121 + L +G IV + + E + + V++ R+ I E D Sbjct: 60 ALDAGLRHRGGRLIVRRGEAATEVRRVAEETGAARVHIAAGVSRYAARREQRIREALADS 119 Query: 122 LLEKRLQHRVICKSFDDSVLLPPGSIL-NHALQMYKVYTP-FRKALIQNL--VQADLRSL 177 E + V+ L PG ++ + V+TP FR+ + + Q R++ Sbjct: 120 GRELHVHDAVVTA-------LAPGRVVPTGGKDHFAVFTPYFRRWEAEGVRGTQTAPRTV 172 Query: 178 PVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFP-IGEQNALHILRKFCKEKVYYYVEQRDI 236 VP + P+ + + + P GE+ ++ + + Y + D Sbjct: 173 RVPDGVASDPLPDRDC-------VENLSPGLARGGEEAGRKLVTSWLNGPMADYEDGHDD 225 Query: 237 PAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMA 296 A TS+LSP+L G +S + +R +E K G +++ +L WR+F+ ++A Sbjct: 226 LAGDATSRLSPHLHFGTVSAAELVHRARE-------KGGLGGEAFVRQLAWRDFHHQVLA 278 Query: 297 FYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMI 356 P + P ++ W D+ + AWK G TG+P++DAAMRQL GWMHNR RM+ Sbjct: 279 DRPDASWSD-YRPRHDR--WRSDADEMHAWKSGLTGYPLVDAAMRQLAHEGWMHNRARML 335 Query: 357 TASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGK 416 ASFL K L VDWR G +F+ L+DGD+A+N WQW A TG D+ P R+ NP IQGK Sbjct: 336 AASFLTKTLYVDWREGARHFLDLLVDGDVANNQLNWQWVAGTGTDTRPN-RVLNPVIQGK 394 Query: 417 RFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKA 466 RFD +G ++R W+PEL V IH P + L+YP P+VD +A Sbjct: 395 RFDARGDYVRGWVPELAEVEGSAIHEPWKLQGLDRAGLDYPDPVVDLAEA 444 >gi|314933001|ref|ZP_07840367.1| putative deoxyribodipyrimidine photolyase [Staphylococcus caprae C87] gi|313654320|gb|EFS18076.1| putative deoxyribodipyrimidine photolyase [Staphylococcus caprae C87] Length = 457 Score = 212 bits (539), Expect = 1e-52, Method: Compositional matrix adjust. Identities = 123/340 (36%), Positives = 182/340 (53%), Gaps = 18/340 (5%) Query: 142 LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPF 201 P N+ + YKV+T F K L++ + + + I G + + + Sbjct: 129 FKPSKTRNNKGEPYKVFTSFYKKWRPYLMKRTVYNYDLKDIAKVGVKSKQKVKGNY---- 184 Query: 202 QAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWN 261 I E+NA + F + + Y +R+ TSQLS YL+ GVL Q +N Sbjct: 185 ----SQSGISEENAQYKWSDFLDKDIEDYDTKREYLPEVLTSQLSIYLAYGVLDIIQIFN 240 Query: 262 RLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSH 321 L ++ K + +++ ELI+REFY M YP F + + W+ + Sbjct: 241 DL----LNSYDKDEQNYEAFIRELIFREFYYVFMTQYPKTAH-HAFKEKYQNLNWSYNEE 295 Query: 322 LLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLL 381 W +G TGFPIIDAAM +LNT G+MHNR+RM+ + FL KDL +DW GEEYF +L+ Sbjct: 296 NFDLWTKGKTGFPIIDAAMGELNTTGYMHNRMRMVVSQFLTKDLFIDWTWGEEYFRQKLI 355 Query: 382 DGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIH 441 D D ASN GWQW+ASTG D+VPYFR+FNP Q +RFD + +I+ ++P LN+V +Y+H Sbjct: 356 DYDAASNVHGWQWSASTGTDAVPYFRMFNPVRQSERFDKKALYIKKFIPILNDVDAKYLH 415 Query: 442 A--PHSWLDKN---DLSLNYPLPIVDHKKACHHTLNQYYA 476 H K +L +YP IVDH ++ H ++++ A Sbjct: 416 DTYKHERQIKEQGIELGKDYPKQIVDHSESRDHVMSEFKA 455 >gi|206891163|ref|YP_002248985.1| deoxyribodipyrimidine photo-lyase [Thermodesulfovibrio yellowstonii DSM 11347] gi|206743101|gb|ACI22158.1| deoxyribodipyrimidine photo-lyase [Thermodesulfovibrio yellowstonii DSM 11347] Length = 437 Score = 212 bits (539), Expect = 1e-52, Method: Compositional matrix adjust. Identities = 153/461 (33%), Positives = 223/461 (48%), Gaps = 49/461 (10%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 + W + DLRI DN+AL+ AC NS +VI VFI P + R++ F+ SL + K Sbjct: 6 IFWFKRDLRIDDNRALFEACQNS-FEVIPVFIFIPSILERFKSYDRRTGFLIESLKHLSK 64 Query: 71 SLSQKG-IVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR-LQ 128 + +KG ++ +H D+ + + + +F NR + + ++ ++K L Sbjct: 65 EIEKKGGRLYCFH-----DEPQRVFLTLIRKYGIQAIFTNRAFSWSGEEVEETVKKLCLN 119 Query: 129 HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188 V +F+D+ L I K+Y+ F + QNL RLT Sbjct: 120 EGVDFVTFNDNFLAEIDKI-----PYRKIYSKFYRYWEQNL-------------RLTEVS 161 Query: 189 TPS--NIPRFFDYPFQAIDPMFPIGEQNAL----HILRKFCKEKVYYYVEQRDIPAIQGT 242 +P N P+ + + E+N + +R+ + Y E RD I GT Sbjct: 162 SPERINTPKLNEPEIDIVASEIS-HEKNIVWKPDFGIRRLKEFDFNRYEELRDRLDIDGT 220 Query: 243 SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVC 302 S+LSPY+ G++S R+ + E ++ EL WREF+ H+ +P Sbjct: 221 SKLSPYIRFGLISLRKIYRVASE--------AAGQDCQFIKELAWREFWYHIKLNFPQF- 271 Query: 303 MGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLV 362 F KI W D L +A+ + TG+P+IDAA+ QL WMHNR RMI ASFL Sbjct: 272 KNLEFQEKRRKIRWQNDEKLYKAFIEAKTGYPLIDAAIIQLKQENWMHNRARMIVASFLT 331 Query: 363 KDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQG 422 KDL++DWR GE +FM L+D D N G WQW AS G D P RIFNP IQ K+FDP Sbjct: 332 KDLMIDWRWGESFFMEHLIDYDEVVNVGNWQWNASVGPDPKP-LRIFNPIIQAKKFDPDC 390 Query: 423 TFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDH 463 FI+ +LP L +P+ +H P + L Y PIV+H Sbjct: 391 KFIKKYLPSLKKLPSFMLHDPLT------HRLPYHKPIVNH 425 >gi|285017930|ref|YP_003375641.1| deoxyribodipyrimidine photo-lyase; photolyase [Xanthomonas albilineans GPE PC73] gi|283473148|emb|CBA15654.1| putative deoxyribodipyrimidine photo-lyase; photolyase protein [Xanthomonas albilineans] Length = 503 Score = 212 bits (539), Expect = 1e-52, Method: Compositional matrix adjust. Identities = 159/473 (33%), Positives = 234/473 (49%), Gaps = 35/473 (7%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 MS +VW R DLR+ D AL+AA V V++ +PE A ++ SL Sbjct: 31 MSYAIVWFRRDLRLHDQPALHAALAAGHTPV-PVYLHSPEDEGDWAAGAASCAWLQRSLA 89 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 + L G + + ++ + + C +++NR+YE RD L++ Sbjct: 90 ALDAQLRACGSRLILRR-GPAEHALRQVIAEC---GAVAVYWNRRYEPATQPRDARLKRE 145 Query: 127 LQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPF-RKALIQNLVQADLR---SLPVP- 180 L+ + S + ++L P + YKV+TPF R AL + V A + +LP P Sbjct: 146 LRALGLEVHSHNGALLFEPWQLATQQGGPYKVFTPFWRSALSRWQVPAPMHAPATLPPPP 205 Query: 181 ------AIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQR 234 A+ G ++ + R F ++ P GEQ A L F + YV R Sbjct: 206 QALHSLALDALGLMSAHDWDRGF---WECWQP----GEQGAHEALDVFVDGALRDYVAGR 258 Query: 235 DIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHL 294 D P GTS+LSP+L G ++P + + L++ G ++ +L WR+F HL Sbjct: 259 DRPDQVGTSRLSPHLHFGEIAPWRIVSALQQHRRAATGTAIDG---YIRQLGWRDFAYHL 315 Query: 295 MAFYPSVCMGKPFIPWTEKIEWNKDSHL-LQAWKQGYTGFPIIDAAMRQLNTIGWMHNRL 353 + +P + P E+ W + LQAW++G +G PI+DA +R+L GWMHNR+ Sbjct: 316 LHHFPHTPE-RNLNPRFERFRWATPGPVQLQAWQRGRSGVPIVDAGLRELWRTGWMHNRV 374 Query: 354 RMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTI 413 RMI AS+L K L V W G +F L+D DLA+N GWQW A TG D+ PYFR+FNP Sbjct: 375 RMIVASYLCKHLRVHWSEGARWFWDTLVDADLANNTLGWQWVAGTGADAAPYFRVFNPVT 434 Query: 414 QGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSL---NYPL-PIVD 462 Q ++FDPQG +I W+PEL +P AP WL L+ +YP PIVD Sbjct: 435 QAQKFDPQGAYIARWVPELAALPVADRFAP--WLVPQRLARVAPHYPRQPIVD 485 >gi|332671236|ref|YP_004454244.1| DNA photolyase FAD-binding protein [Cellulomonas fimi ATCC 484] gi|332340274|gb|AEE46857.1| DNA photolyase FAD-binding protein [Cellulomonas fimi ATCC 484] Length = 450 Score = 211 bits (538), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 146/445 (32%), Positives = 214/445 (48%), Gaps = 38/445 (8%) Query: 8 SVHLVWLRNDLRITDNKALYAACHNS---DAKVIAVFIATPEQWRQHGISARQSHFIYAS 64 +VH W R DLR+ DN AL AA + D V+ +F+ P W + + ++ S Sbjct: 3 TVH--WFRRDLRLADNPALVAAVEAARRADDAVVPLFVVDPGLW--TAAAGPRVAYLARS 58 Query: 65 LLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLE 124 L + +L + +V +++ + Y R RRD + Sbjct: 59 LRALDAALDGRLVVRHGRPQDVVPAVAREVEAPTVHVTAATEPYGR-------RRDDAVA 111 Query: 125 KRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADL---RSLPVPA 181 + L V + + PG + Y+V+TPFR+A + + A RS+P Sbjct: 112 QALGD-VPLVATGSPYAVAPGRLRTQQGSPYEVFTPFRRAWLDHGWSAPAPRPRSVPWAD 170 Query: 182 IRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQG 241 +R G +P D P +D + GE A F + + Y E RD P + G Sbjct: 171 VRGDG------VP---DEPATTVD-LPAAGEAAARRRWATFVADALADYDEDRDRPDLDG 220 Query: 242 TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAF-SWLNELIWREFYRHLMAFYPS 300 TS +S L G L PR DL S + ++ +EL WREF+ ++ +P Sbjct: 221 TSSMSVPLKYGELHPRTL-------LADLAGAGSSASVATYRSELAWREFHADVLWHHPD 273 Query: 301 VCMG--KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITA 358 + +P AW +G TG+P++DA MRQL IGWMHNR+RM+TA Sbjct: 274 AARRSLRTVVPEDAWATGPAADDAFAAWAEGRTGYPLVDAGMRQLRAIGWMHNRVRMVTA 333 Query: 359 SFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRF 418 SFLVKDL W+ G E+F++ L+DGD+ N WQW A TG D+ PYFR+FNP +QG+RF Sbjct: 334 SFLVKDLHQRWQRGAEHFLAWLVDGDVPQNQLNWQWVAGTGRDAAPYFRVFNPVLQGRRF 393 Query: 419 DPQGTFIRHWLPELNNVPTQYIHAP 443 DP GT++R W+PEL +P +H P Sbjct: 394 DPDGTYVRQWVPELRGIPGGAVHEP 418 >gi|307329598|ref|ZP_07608757.1| Deoxyribodipyrimidine photo-lyase [Streptomyces violaceusniger Tu 4113] gi|306884792|gb|EFN15819.1| Deoxyribodipyrimidine photo-lyase [Streptomyces violaceusniger Tu 4113] Length = 454 Score = 211 bits (538), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 143/471 (30%), Positives = 223/471 (47%), Gaps = 45/471 (9%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 MS L +DLR++DN L A +++ +V+ +F+ + F+ +L Sbjct: 1 MSTSLSVFTSDLRLSDNPVLRGATRSAE-RVVPLFVVDRGLAGTGFAVPNRVAFLADALA 59 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 + L ++G + D++ + Q ++ RR++ L + Sbjct: 60 DLDAGLRERGGRLVVRRG----DAVAEILRAARQADAEEVHIAGGVSGYATRREQRLREA 115 Query: 127 LQHRVICKSFDDSVL--LPPGSILNHALQMYKVYTPF-----RKALIQNL-------VQA 172 L+ +V+ + PG + + V+TP+ R L + L V + Sbjct: 116 LEADGRRLRVHGAVVTAVEPGEVAPAGKDHFAVFTPYFRAWQRAGLREALTAPRTVSVPS 175 Query: 173 DLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNA-LHILRKFCKEKVYYYV 231 LRS PV A+ P +PS P P G + A +R + + + Y Sbjct: 176 GLRSEPVAAVTSLAPGSPS--------------PGLPEGGETAGRRRVRSWWRSGLADYA 221 Query: 232 EQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFY 291 +++D A TS+LSPYL G LSP + +R ++ +GA +++ +L WR+F+ Sbjct: 222 DRQDDLAGDATSRLSPYLHFGCLSPVELVHRARKAG-------GAGADAFVRQLAWRDFH 274 Query: 292 RHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHN 351 ++A P + P ++ W D + AWK G TG+P++DA MRQL GWMHN Sbjct: 275 HQVLAARPDAAHAD-YRPRGDR--WRHDEAEIAAWKAGRTGYPLVDAGMRQLRHEGWMHN 331 Query: 352 RLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNP 411 R R++ A FL K L DWRIG +F+ L+DGDLA+N WQWAA TG D+ P R+ NP Sbjct: 332 RARLLVAGFLTKTLYQDWRIGARHFLDLLVDGDLANNQLNWQWAAGTGTDTRPN-RVLNP 390 Query: 412 TIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVD 462 Q +RFDP G ++R W+PEL V +H P L+YP PIVD Sbjct: 391 LTQARRFDPDGAYVRRWVPELAEVTGSGVHTPWRLPKAERDRLDYPGPIVD 441 >gi|41409179|ref|NP_962015.1| Phr [Mycobacterium avium subsp. paratuberculosis K-10] gi|41397999|gb|AAS05629.1| Phr [Mycobacterium avium subsp. paratuberculosis K-10] Length = 442 Score = 211 bits (537), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 151/474 (31%), Positives = 224/474 (47%), Gaps = 48/474 (10%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 L+W R DLR+ D+ AL AA +SD +V+A F+ P R G R+ F+ SL ++ Sbjct: 4 LLWFRRDLRLHDHPALSAAA-DSD-EVLACFVLDPRLQRSSG--PRRLQFLGDSLRVLRD 59 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130 L + +V + + + + + + + + + RRD + L Sbjct: 60 ELDGRLLVTRGRPDIRIPEIAKAIGA-------SSVHVSEDFTPFGKRRDARVRAALAS- 111 Query: 131 VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP--- 187 V + L+ PG + Y+V+TPF + + +++ A R P Sbjct: 112 VPLVATGSPYLVAPGRVTKPDGSPYQVFTPFLRRWRDTGWRPPVKTGAASA-RWLDPARL 170 Query: 188 -VTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246 +T IP P +D GE+ A + + F + Y + R P I+GTS++S Sbjct: 171 GITDCEIPD----PGATLD--LAAGEEAARNKWKSFVDNGLANYADDRHRPDIEGTSRMS 224 Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP 306 +L G + PR V L + A ++L EL +R+FY ++ P+ Sbjct: 225 AHLKFGTIHPRT--------LVADLDLRAAAARAYLRELAFRDFYADVLHHRPASAWRN- 275 Query: 307 FIPWTEKIE------WNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASF 360 W + + AWK G TGFP +DA MRQL G+MHNR+RM ASF Sbjct: 276 ---WNSAFDAIRTDTGAEAGRRFAAWKAGETGFPFVDAGMRQLRQTGFMHNRVRMTVASF 332 Query: 361 LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDP 420 LVKDL + W+ G +F+ QL+DGDLA+N GWQW A G D+ PYFR+FNP QG++FDP Sbjct: 333 LVKDLHLPWQWGAHWFLQQLVDGDLANNQHGWQWCAGCGTDAAPYFRVFNPAAQGEKFDP 392 Query: 421 QGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQY 474 G +IR W+PEL + PH L + YP PIVDH L +Y Sbjct: 393 SGDYIRRWVPEL-----RCADDPH--LRTGERPPGYPAPIVDHATERAEALRRY 439 >gi|328887006|emb|CCA60245.1| Deoxyribodipyrimidine photolyase [Streptomyces venezuelae ATCC 10712] Length = 457 Score = 211 bits (536), Expect = 3e-52, Method: Compositional matrix adjust. Identities = 146/469 (31%), Positives = 226/469 (48%), Gaps = 40/469 (8%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M+V +V +DLR+ D+ L AA + +V+ +F+ P R + + F+ L Sbjct: 1 MNVSVVLFTSDLRVHDHPPLRAALGRGN-EVVPLFVRDPAVARAGHAAPNRDAFLADCLA 59 Query: 67 QVQKSLSQKG---IVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLL 123 + +L ++G +V + + D+ + + R+ E R + Sbjct: 60 ALDSALRERGGRLVVRSGDPVAEVCAVVREADADEVHMAAGCSGFARRREDRLRRALEAD 119 Query: 124 EKRLQ-HRVICKSFDDSVLLPPGSILNHALQMYKVYTP-FRKALIQNLVQADLRSLPVPA 181 +RL H + + LP G++ Y V+TP FR+ + L + P+ A Sbjct: 120 GRRLYVHDAVVTA------LPTGAVTPGGSDHYAVFTPYFRRWSRERLRE------PLAA 167 Query: 182 IRLTGPVTPSNIPRFFDYPFQA-----IDPMFPIGEQNALHILRKFCKEKVYYYVEQRDI 236 R+ TP I R D P +A + GEQ L + E V Y E+ D Sbjct: 168 PRVV--RTPRGI-RSEDLPARANVQSVSGGLAAGGEQEGRKRLAAWLAEDVDTYEERHDD 224 Query: 237 PAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMA 296 A TS+LSPYL G +S + +R + + +GA +++ +L WR+F+ ++A Sbjct: 225 LAGDATSRLSPYLHFGAVSAAEAVHRARS-------RGGAGAEAFVRQLCWRDFHHQVLA 277 Query: 297 FYPSVCMGK---PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRL 353 P W E D L+AW++G TG+P++DAAMRQL GWMHNR Sbjct: 278 ARPDAASDDYRTRHDRWRRGTEAEAD---LRAWREGRTGYPVVDAAMRQLAHEGWMHNRG 334 Query: 354 RMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTI 413 R++TASFL K L +DWR G +F+ L+DGDLA+N WQW A TG DS P R+ NP Sbjct: 335 RLLTASFLTKTLYIDWREGARHFLELLVDGDLANNQLNWQWMAGTGTDSRPN-RVLNPVT 393 Query: 414 QGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVD 462 Q KR+DP+G ++R W+PEL + +H P + +YP P+V+ Sbjct: 394 QAKRYDPEGAYVRRWVPELAGLEGPAVHEPWKLPGRERARYDYPDPMVE 442 >gi|271963152|ref|YP_003337348.1| deoxyribodipyrimidine photo-lyase [Streptosporangium roseum DSM 43021] gi|270506327|gb|ACZ84605.1| Deoxyribodipyrimidine photo-lyase [Streptosporangium roseum DSM 43021] Length = 425 Score = 211 bits (536), Expect = 3e-52, Method: Compositional matrix adjust. Identities = 152/458 (33%), Positives = 230/458 (50%), Gaps = 39/458 (8%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGI-SARQSHFIYASL 65 M +V DLR+ D+ AL AAC ++ +V+ +F+ P G+ ++ F+ SL Sbjct: 1 MDTVIVLFNRDLRVHDHPALAAACADA-WRVVPLFVIDP------GVPGGHRAGFLAESL 53 Query: 66 LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125 ++ SL ++G Q +++ Q + + + R +L E+ Sbjct: 54 DDLRGSLRERGGDLVVRQGDPVAETLRLARELPAQAVYVSADVS---ALAQRRERRLAEE 110 Query: 126 RLQHRVICKSFDDSVLLPPGSIL-NHALQMYKVYTPFRKALIQNLVQADLRSLPVPA-IR 183 +HR+ ++F ++PP ++ + Y+V+TP+ + Q L PA +R Sbjct: 111 CERHRMEFRAFPGVTIVPPDALRPSGGGDHYRVFTPYWRVWSG---QRRREVLGAPAKVR 167 Query: 184 LTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS 243 + + +P P +F GE A +R++ K V Y + D A TS Sbjct: 168 IPEGLEAGPLPVAGHEPHG----LFRGGETVARERMRQWLKYCVEDYADGHDDLAGNRTS 223 Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCM 303 +LSPYL G LSP + L E D + +L WR+F+ + +P + Sbjct: 224 KLSPYLRFGCLSPLEL-ESLSENGDDFV-----------RQLCWRDFFHQVTRAFPRINR 271 Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363 + P + EW D QAWK+G TG PI+DA MRQL GWMHNR RM+T+SFLV+ Sbjct: 272 DD-YRPQGQ--EWRDDEDAAQAWKEGRTGVPIVDAGMRQLLAEGWMHNRARMVTSSFLVR 328 Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423 L VDWR+G E+F LLDGD+++N G WQW A TGND+ P RI NP Q +RFDP+G Sbjct: 329 RLRVDWRVGAEHFFDLLLDGDVSNNYGNWQWVAGTGNDTRPN-RIVNPVRQARRFDPEGE 387 Query: 424 FIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIV 461 +IR +LPEL+ VP + I+ P W + YP P+V Sbjct: 388 YIRRYLPELDAVPVKMIYEP--WRMSTGIR-GYPAPLV 422 >gi|213613145|ref|ZP_03370971.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp. enterica serovar Typhi str. E98-2068] Length = 141 Score = 211 bits (536), Expect = 3e-52, Method: Compositional matrix adjust. Identities = 95/141 (67%), Positives = 112/141 (79%) Query: 341 RQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGN 400 RQLN GWMHNRLRMITASFLVKDLL+DWR+GE YFMSQL+DGDLA+NNGGWQWAASTG Sbjct: 1 RQLNATGWMHNRLRMITASFLVKDLLIDWRLGERYFMSQLIDGDLAANNGGWQWAASTGT 60 Query: 401 DSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPI 460 D+ PYFRIFNPT Q +RFD G FIR WLP L ++P + IH P W +K + L+YP PI Sbjct: 61 DAAPYFRIFNPTTQRERFDRDGEFIRQWLPALRDIPGKAIHEPWRWAEKAGVVLDYPRPI 120 Query: 461 VDHKKACHHTLNQYYAAKKQS 481 V+HK+A TL+ Y AA+K + Sbjct: 121 VEHKQARIATLSAYEAARKGA 141 >gi|302557422|ref|ZP_07309764.1| deoxyribodipyrimidine photolyase [Streptomyces griseoflavus Tu4000] gi|302475040|gb|EFL38133.1| deoxyribodipyrimidine photolyase [Streptomyces griseoflavus Tu4000] Length = 457 Score = 210 bits (535), Expect = 3e-52, Method: Compositional matrix adjust. Identities = 137/467 (29%), Positives = 223/467 (47%), Gaps = 36/467 (7%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M+V +V +DLR+ D+ L+AA +D +V+ +F+ P G A A L Sbjct: 1 MTVAVVLFTSDLRLHDHPPLHAALRAAD-EVVPLFVLDP-GIHAAGFDAPNRRAFLADCL 58 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYC------LQQRVTKLFYNRQYEINEVRRD 120 + + ++ + + + + C + VT + R+ + E D Sbjct: 59 RDLDASLRRRGGRLVVRAGPVAGEVCAVAAECGAAEVHMAAGVTAYAHRREERLRERLGD 118 Query: 121 KLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVP 180 + R+ V+ + PG++ + V+TP+ + + ++ + LP P Sbjct: 119 GGVALRVHDTVVTA-------VAPGAVTPSGSDHFAVFTPYFRRWDRERLR---KPLPAP 168 Query: 181 -AIRLTGPVTPSNIPRFFDYPFQAIDPMFP-IGEQNALHILRKFCKEKVYYYVEQRDIPA 238 A+R+ V +P D P P GE+ ++ + + Y + D A Sbjct: 169 RAVRVPDGVRGRPVPERAD--VSGTSPGVPPGGEKAGRDRFSRWLGDGLSRYEDLHDDLA 226 Query: 239 IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFY 298 TS+LSPYL G LSP + +R + G +++ +L WR+F+ ++A Sbjct: 227 GDATSRLSPYLHFGALSPVELVHRARGHG-------GPGGDAFVRQLCWRDFHHQVLAAR 279 Query: 299 PSVCMGKPFIPWTEKIEWNKDSHL---LQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRM 355 P G T W + + AW++G TG+P++DAAMRQL GWMHNR R+ Sbjct: 280 PEASAGDYR---TRHDHWRGEEDAADDIAAWREGRTGYPVVDAAMRQLRHEGWMHNRARL 336 Query: 356 ITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQG 415 + ASFL K L VDWRIG +F+ L+DGD+ +N WQW A TG D+ P+ R+ NP +Q Sbjct: 337 LVASFLTKTLYVDWRIGARHFLDLLVDGDVVNNQLNWQWVAGTGTDTRPH-RVLNPLVQA 395 Query: 416 KRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVD 462 KRFDP+G ++R W+PEL +V + +H P + L YP P++D Sbjct: 396 KRFDPEGAYVRRWVPELADVDGRAVHEPWRLPEDRRAGLGYPAPLID 442 >gi|152967497|ref|YP_001363281.1| deoxyribodipyrimidine photo-lyase [Kineococcus radiotolerans SRS30216] gi|151362014|gb|ABS05017.1| Deoxyribodipyrimidine photo-lyase [Kineococcus radiotolerans SRS30216] Length = 450 Score = 210 bits (535), Expect = 4e-52, Method: Compositional matrix adjust. Identities = 150/466 (32%), Positives = 227/466 (48%), Gaps = 26/466 (5%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 ++W R DLR++D+ AL AA + D V+ +F+ P W G R ++ SL + Sbjct: 4 VLWFRRDLRLSDHPALLAAAADGD--VLPLFVIDPALWGPSGDVRRT--YLLRSLRSLDA 59 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ-- 128 +L +V + D +D + +++ RRD + + L Sbjct: 60 ALGGALVVER-------GDPAVVVDRVAARIGASRVHVTADAGPLGRRRDDAVGRALAAG 112 Query: 129 HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188 R + ++ + PG++ + ++V+TPF +A + A S A+R G Sbjct: 113 GRELVRT-GTPYAIGPGTLRTGSGSPFQVFTPFSRAWRAHGWPAPADS--PGAVRWVGDG 169 Query: 189 TPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPY 248 + + D P + GE A +F + Y RD P GTSQLS Sbjct: 170 EGVDGGHWPDEPDLGGLTLPEAGEDAAHERWHRFLDHALADYDGDRDRPDRDGTSQLSHA 229 Query: 249 LSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFI 308 L G L PR L+ + GA ++ EL WR+FY ++ P + + Sbjct: 230 LKWGELHPRTLLAALRGQ-------SSKGAETYATELCWRDFYADVLWHRPDSAR-EYYK 281 Query: 309 PWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVD 368 P + + + +AW +G TGFPI+DA MRQ+ +GW+HNR+RMITASFLVKDL V+ Sbjct: 282 PQLAGLRYAEPGEQFRAWAEGRTGFPIVDAGMRQMRAVGWVHNRVRMITASFLVKDLHVE 341 Query: 369 WRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHW 428 W+ G FM L D DLASN GWQW A +G D+ P+FR+FNP QG+RFDP G ++R + Sbjct: 342 WQHGGREFMHWLRDADLASNMHGWQWVAGSGTDASPFFRVFNPVTQGQRFDPDGDYVRRF 401 Query: 429 LPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQY 474 +PEL ++P + +H P W + + YP IVDH L +Y Sbjct: 402 VPELRHLPGKSVHTP--WEAADGYAHGYPERIVDHAHEREVALAEY 445 >gi|2564038|dbj|BAA22943.1| photolyase [Thermus thermophilus] Length = 420 Score = 210 bits (535), Expect = 4e-52, Method: Compositional matrix adjust. Identities = 140/432 (32%), Positives = 212/432 (49%), Gaps = 49/432 (11%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M LVW R DLR+ D+ AL A + V+ + + P + + R+ + ++ Sbjct: 1 MGPLLVWHRGDLRLHDHPALLEAL--ARGPVVGLVVLDPNNLK---TTPRRRAWFLENVR 55 Query: 67 QVQKSLSQKGI---VFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLL 123 ++++ +G V + ++ L + + + Y R RD + Sbjct: 56 ALREAYRARGGALWVLEGLPWEKVPEAARRLKAKAVYALTSYTPYGRY-------RDAKV 108 Query: 124 EKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIR 183 ++ L + + + Y+VYTPF + + V+A LP P Sbjct: 109 QEALPVPLHLLPAPHLLP-------PDLPRAYRVYTPFARRFLG--VEA---PLPAPEAL 156 Query: 184 LTGPVTPSNIPRFFDYPFQAIDPMFPI---GEQNALHILRKFCKEKVYYYVEQRDIPAIQ 240 GP IPR DP P+ GE+ AL LR F + K+ Y E+RD + Sbjct: 157 PKGPEE-GEIPR--------EDPGLPLPEPGEEAALAGLRAFLEAKLPAYAEERDRLDGE 207 Query: 241 GTSQLSPYLSIGVLSPR-QCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYP 299 G S+LSPY ++GVLSPR W + + GA W+ EL+WR+F HL+ +P Sbjct: 208 GGSRLSPYFALGVLSPRLAAWEAER--------RGGEGARKWVAELLWRDFSYHLLYHFP 259 Query: 300 SVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITAS 359 + +P P + + W +D L +AW +G TG P++DAAMR+L+ G++ NR RM A Sbjct: 260 WMAE-RPLDPRFQALPWQEDEALFRAWYEGRTGVPLVDAAMRELHATGFLSNRARMNAAQ 318 Query: 360 FLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFD 419 F VK LL+ W+ EE F LLDGD A N GWQWA G D+ PYFR+FNP +QG+R D Sbjct: 319 FAVKHLLLPWKRCEEAFRHLLLDGDRAVNLQGWQWAGGLGVDAAPYFRVFNPVLQGERHD 378 Query: 420 PQGTFIRHWLPE 431 P+G +++ W PE Sbjct: 379 PEGRWLKRWAPE 390 >gi|46255129|ref|YP_006041.1| deoxyribodipyrimidine photolyase [Thermus thermophilus HB27] gi|47606703|sp|P61496|PHR_THET2 RecName: Full=Deoxyribodipyrimidine photo-lyase; AltName: Full=DNA photolyase; AltName: Full=Photoreactivating enzyme gi|46197978|gb|AAS82388.1| deoxyribodipyrimidine photolyase [Thermus thermophilus HB27] Length = 420 Score = 210 bits (534), Expect = 4e-52, Method: Compositional matrix adjust. Identities = 140/432 (32%), Positives = 212/432 (49%), Gaps = 49/432 (11%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M LVW R DLR+ D+ AL A + V+ + + P + + R+ + ++ Sbjct: 1 MGPLLVWHRGDLRLHDHPALLEAL--ARGPVVGLVVLDPNNLK---TTPRRRAWFLENVR 55 Query: 67 QVQKSLSQKGI---VFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLL 123 ++++ +G V + ++ L + + + Y R RD + Sbjct: 56 ALREAYRARGGALWVLEGLPWEKVPEAARRLKAKAVYALTSYTPYGRY-------RDAKV 108 Query: 124 EKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIR 183 ++ L + + + Y+VYTPF + + V+A LP P Sbjct: 109 QEALPVPLHLLPAPHLLP-------PDLPRAYRVYTPFARRFLG--VEA---PLPAPEAL 156 Query: 184 LTGPVTPSNIPRFFDYPFQAIDPMFPI---GEQNALHILRKFCKEKVYYYVEQRDIPAIQ 240 GP IPR DP P+ GE+ AL LR F + K+ Y E+RD + Sbjct: 157 PKGPEE-GEIPR--------EDPGLPLPEPGEEAALAGLRAFLEAKLPRYAEERDRLDGE 207 Query: 241 GTSQLSPYLSIGVLSPR-QCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYP 299 G S+LSPY ++GVLSPR W + + GA W+ EL+WR+F HL+ +P Sbjct: 208 GGSRLSPYFALGVLSPRLAAWEAER--------RGGEGARKWVAELLWRDFSYHLLYHFP 259 Query: 300 SVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITAS 359 + +P P + + W +D L +AW +G TG P++DAAMR+L+ G++ NR RM A Sbjct: 260 WMAE-RPLDPRFQALPWQEDEALFRAWYEGRTGVPLVDAAMRELHATGFLSNRARMNAAQ 318 Query: 360 FLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFD 419 F VK LL+ W+ EE F LLDGD A N GWQWA G D+ PYFR+FNP +QG+R D Sbjct: 319 FAVKHLLLPWKRCEEAFRHLLLDGDRAVNLQGWQWAGGLGVDAAPYFRVFNPVLQGERHD 378 Query: 420 PQGTFIRHWLPE 431 P+G +++ W PE Sbjct: 379 PEGRWLKRWAPE 390 >gi|318058735|ref|ZP_07977458.1| deoxyribodipyrimidine photo-lyase [Streptomyces sp. SA3_actG] Length = 455 Score = 209 bits (533), Expect = 7e-52, Method: Compositional matrix adjust. Identities = 136/466 (29%), Positives = 226/466 (48%), Gaps = 36/466 (7%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M +V +DLR+ D+ L AA ++ +V+ +F+ P + +A ++ F+ L Sbjct: 1 MKASIVLYTSDLRLHDHPPLRAAVREAE-EVVPLFVRDPGIKKVGFHAANRAAFLADCLG 59 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRR-----DK 121 + L ++G + + + L +RV Y N R + Sbjct: 60 DLDAGLRERGGRLVV-RAGDPAQVVRELVGSTGAERVHVAAGVSAYARNRADRLRAALEG 118 Query: 122 LLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADL---RSLP 178 + ++H + + LPPG ++ + + V+TP+ + ++ L R L Sbjct: 119 TGAELVEHEAVITA------LPPGEVVPGSKDHFAVFTPYHRQWSAQHLREPLGAPRKLS 172 Query: 179 VPAIRLTGPVTPSNIPRFFDYPFQAIDPMFP-IGEQNALHILRKFCKEKVYYYVEQRDIP 237 VP+ V +PR D + I P GE+ L + ++ + Y + D Sbjct: 173 VPS-----KVRSDGVPRRED--VEGISPGLARGGEREGRAKLASWRRDGISRYEDLHDDL 225 Query: 238 AIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAF 297 A GTS+LSPYL G LS +C +R + +++ +L WR+F+ ++A Sbjct: 226 AGDGTSRLSPYLHFGALSAAECVHRARAAGGAGAD-------AFVRQLCWRDFHHQVLAA 278 Query: 298 YPSVCMGKPFIPWTEKIEWNKDS-HLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMI 356 P+ + + P + D+ H AW++G TG+P++DAAMRQL GWMHNR R++ Sbjct: 279 RPAAAH-EDYRPRGDHWRTGSDAEHEAAAWREGRTGYPVVDAAMRQLAHEGWMHNRGRLL 337 Query: 357 TASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGK 416 ASFL K L +DWR+G +F+ L+DGDL +N WQW A TG D+ P R+ NP Q + Sbjct: 338 AASFLTKTLYLDWRLGAAHFLDLLVDGDLVNNQMNWQWVAGTGTDTRP-GRVLNPLTQAR 396 Query: 417 RFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVD 462 ++DP+G ++RHW+PEL + + +H P W + YP P+VD Sbjct: 397 KYDPEGDYVRHWVPELRGIEGRAVHEP--WKRPREEREGYPEPLVD 440 >gi|228475792|ref|ZP_04060509.1| deoxyribodipyrimidine photolyase [Staphylococcus hominis SK119] gi|228270140|gb|EEK11592.1| deoxyribodipyrimidine photolyase [Staphylococcus hominis SK119] Length = 457 Score = 209 bits (532), Expect = 9e-52, Method: Compositional matrix adjust. Identities = 142/473 (30%), Positives = 229/473 (48%), Gaps = 39/473 (8%) Query: 12 VWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQKS 71 V L RI +N DA I E + + G + +++++ Y +L + Sbjct: 5 VILNRVFRINNNPLFEYINQQKDAFDKCYLIIPKETFEEKG-TDKKANYYYGTLEKFLYK 63 Query: 72 LSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKL--------FYNRQYEINEVRRDKLL 123 L + H + L +C + + ++ ++ +Y+I ++ Sbjct: 64 LKE-------HHIEPYVIDYSELGMFCTEHDIKEIVMAGDIMSYHQERYDIRHLK----- 111 Query: 124 EKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIR 183 + H + + + + P + +N Q YKV+T F KA L Q + I Sbjct: 112 QAFKNHDIPVITINVNHYFKPSNTMNQQGQPYKVFTSFYKAHRSKLRQHSPYQYQLSDIA 171 Query: 184 LTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS 243 + I + + Q+ D + H ++ + K++ Y +P I TS Sbjct: 172 NKCSQSQQKITNDYHHDGQSEDQALNNWKDYLNHSIQNYKKDREY-------LPEIL-TS 223 Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCM 303 QLS L+ G++ +Q L E + + +S S++ E+++REFY LMA YP + Sbjct: 224 QLSIVLAYGLIDIKQIITDLLERYKE----NESNYESFIREVMFREFYYVLMAQYPHIA- 278 Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363 + F I+W+ + W +G TGFPIIDAAM +LN G+MHNR+RM+ + FL K Sbjct: 279 HEAFNEKYRTIQWSYNKEEFNRWCEGQTGFPIIDAAMNELNETGFMHNRMRMVVSQFLTK 338 Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423 DL +DW GE+YF +L+D D ASN GWQW+AS G D+VPYFR+FNP Q +RFD Sbjct: 339 DLFIDWAWGEDYFRKKLIDYDAASNIHGWQWSASIGTDAVPYFRMFNPIRQSERFDKDAL 398 Query: 424 FIRHWLPELNNVPTQYIHAP---HSWLDKNDLSL--NYPLPIVDHKKACHHTL 471 +I+ ++P ++VP + +H P + L K + L +YP PIVDHK A H + Sbjct: 399 YIKKYIPIFDHVPAKLLHHPFQHQTQLVKKGIQLGKDYPEPIVDHKVAREHVM 451 >gi|314937003|ref|ZP_07844350.1| putative deoxyribodipyrimidine photolyase [Staphylococcus hominis subsp. hominis C80] gi|313655622|gb|EFS19367.1| putative deoxyribodipyrimidine photolyase [Staphylococcus hominis subsp. hominis C80] Length = 457 Score = 209 bits (532), Expect = 9e-52, Method: Compositional matrix adjust. Identities = 142/473 (30%), Positives = 229/473 (48%), Gaps = 39/473 (8%) Query: 12 VWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQKS 71 V L RI +N DA I E + + G + +++++ Y +L + Sbjct: 5 VILNRVFRINNNPLFEYINQQKDAFDKCYLIIPKETFEEKG-TDKKANYYYGTLEKFLYK 63 Query: 72 LSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKL--------FYNRQYEINEVRRDKLL 123 L + H + L +C + + ++ ++ +Y+I ++ Sbjct: 64 LKE-------HHIEPYVIDYSELGMFCTEHDIKEIVMAGDIMSYHQERYDIRHLK----- 111 Query: 124 EKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIR 183 + H + + + + P + +N Q YKV+T F KA L Q + I Sbjct: 112 QAFKNHDIPVITINVNHYFKPSNTMNQQGQPYKVFTSFYKAHRSKLRQHSPYQYQLSDIA 171 Query: 184 LTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS 243 + I + + Q+ D + H ++ + K++ Y +P I TS Sbjct: 172 NKCSQSQQTITNDYHHDGQSEDQALNNWKDYLNHSIQNYKKDREY-------LPEIL-TS 223 Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCM 303 QLS L+ G++ +Q L E + + +S S++ E+++REFY LMA YP + Sbjct: 224 QLSIVLAYGLIDIKQIITDLLERYEE----NESNYESFIREVMFREFYYVLMAQYPHIA- 278 Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363 + F I+W+ + W +G TGFPIIDAAM +LN G+MHNR+RM+ + FL K Sbjct: 279 HEAFNEKYRTIQWSYNKEEFNRWCEGQTGFPIIDAAMNELNETGFMHNRMRMVVSQFLTK 338 Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423 DL +DW GE+YF +L+D D ASN GWQW+AS G D+VPYFR+FNP Q +RFD Sbjct: 339 DLFIDWAWGEDYFRKKLIDYDAASNIHGWQWSASIGTDAVPYFRMFNPIRQSERFDKDAL 398 Query: 424 FIRHWLPELNNVPTQYIHAP---HSWLDKNDLSL--NYPLPIVDHKKACHHTL 471 +I+ ++P ++VP + +H P + L K + L +YP PIVDHK A H + Sbjct: 399 YIKKYIPIFDHVPAKLLHHPFQHQTQLVKKGIQLGKDYPEPIVDHKVAREHVM 451 >gi|320007131|gb|ADW01981.1| Deoxyribodipyrimidine photo-lyase [Streptomyces flavogriseus ATCC 33331] Length = 459 Score = 209 bits (531), Expect = 1e-51, Method: Compositional matrix adjust. Identities = 140/466 (30%), Positives = 231/466 (49%), Gaps = 34/466 (7%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M+V +V +DLR+ D+ L+AA +SD +V+ +F+ P + + F+ L Sbjct: 1 MTVAIVLFTSDLRLHDHPPLHAALASSD-EVVPLFVLDPGVEAAGFAAPNRRAFLADCLR 59 Query: 67 QVQKSLSQKG---IVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLL 123 + L +G +V + + ++ + Y + RR++ L Sbjct: 60 DLDSGLRDRGGRLVVREGEVAEEVRRIVSETEAGVVHMAAGISGYAQ-------RREERL 112 Query: 124 EKRLQHRVICK-SFDDSVL--LPPGSIL--NHALQMYKVYTPFRKALIQNLVQADLRSLP 178 + L V C+ S D+V+ + PGS++ + V+TP+ + LRS P Sbjct: 113 REALSS-VGCRLSVHDAVVTAVAPGSVVPSGAGRDHFAVFTPY----FRRWSGEGLRS-P 166 Query: 179 VPAIR-LTGPVTPSNIPRFFDYPFQAIDP-MFPIGEQNALHILRKFCKEKVYYYVEQRDI 236 A R + P P + + + P + GE + + ++ + Y ++ D Sbjct: 167 FGAPRKVRVPEGPGSAALPSRAGTRGLSPGLAEGGETEGRRLFTAWRRDGLASYEDRHDD 226 Query: 237 PAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMA 296 A TS+LSP+L G LSP + +R + GA +++ ++ WR+F+ ++A Sbjct: 227 MAGDATSRLSPHLHFGTLSPTELVHRAR-------ATGGPGAEAFVRQVCWRDFHHQVLA 279 Query: 297 FYPSVCMGKPFIPWTEKIEWNKDSHL-LQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRM 355 P+V + P ++ + + AWK+G TG+P++DAAMRQL GWMHNR R+ Sbjct: 280 TRPAVSRSD-YRPKQDRWRTGRAAEADTAAWKEGRTGYPVVDAAMRQLLHEGWMHNRGRL 338 Query: 356 ITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQG 415 +TASFL K L VDWR G +F+ L+DGD+A+N WQW A TG DS P R+ NP Q Sbjct: 339 LTASFLAKTLYVDWRTGARHFLELLVDGDIANNQLNWQWVAGTGTDSRPN-RVLNPVTQA 397 Query: 416 KRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIV 461 KR+DP+G ++R W+PEL +P +H P ++ +YP P+V Sbjct: 398 KRYDPEGAYVRRWVPELAGIPGSAVHEPWKLPREDRRRYDYPEPVV 443 >gi|310831104|ref|YP_003969747.1| putative CPD class I photolyase [Cafeteria roenbergensis virus BV-PW1] gi|309386288|gb|ADO67148.1| putative CPD class I photolyase [Cafeteria roenbergensis virus BV-PW1] Length = 474 Score = 208 bits (530), Expect = 1e-51, Method: Compositional matrix adjust. Identities = 148/480 (30%), Positives = 240/480 (50%), Gaps = 29/480 (6%) Query: 10 HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHG-ISARQSHFIYASLLQV 68 +L R DLRI DN L+ A + I +FI T +Q + +S F+ SL + Sbjct: 3 NLFIFRRDLRIIDNLGLHQAL--KETNTIPIFIFTHQQVINNPYLSDNSFGFLIESLEDL 60 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYE-INEVRRDKLLEKRL 127 K +S+ Y + I+ + + K++ N+ + + R DKLLE Sbjct: 61 SKQISKNKGKLYYFLTNKNTTEIDIISQIIQYNNILKIYTNKDWTPYAKKRDDKLLEFGK 120 Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPF---RKALIQNLVQ-ADLRSLPVPAIR 183 + +I +D LLP GSI + YK++TPF K L +N+ + + I+ Sbjct: 121 KENIIINLIEDYTLLPMGSICTNNNTAYKIFTPFYNKSKELWKNIPKPTKVNKYKFNKIK 180 Query: 184 LTGPVTPS-NIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGT 242 + + N+ Y + G +NAL L+K +K Y +++ ++ + T Sbjct: 181 FINLIKSNINLSAMKQYYKSNSFRLVQGGRKNALLQLKKIKNQKEYS-IKRNNL--MYET 237 Query: 243 SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVC 302 + LS Y+ G +S R+ + + K+ +K + +S +L WREFY ++ +Y V Sbjct: 238 THLSAYIKFGCISIREVFYKFKK-----YLKDNNTLYS---QLFWREFYTYITHYYQYVL 289 Query: 303 MG----KPFIPWTEK---IEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRM 355 G K + + EK +W+ + L WK+G TGFPI+DA +++L T G+MHNR R+ Sbjct: 290 QGQISNKVNLDFQEKYGNFKWSNNKTFLNKWKKGETGFPIVDAGIKELLTTGYMHNRSRL 349 Query: 356 ITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQG 415 +T++FL+K L+DWR GE+YF +L D D A NNGGWQ+ G + YFRI +P Q Sbjct: 350 LTSAFLIKLCLIDWREGEKYFAQKLTDYDPAQNNGGWQFHHG-GASNADYFRIISPISQA 408 Query: 416 KRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLS-LNYPLPIVDHKKACHHTLNQY 474 RFD +I+ WLP L ++ +++ + DL+ LNY P+ D+KK +L Y Sbjct: 409 NRFDKNAEYIKKWLPNLKDIKPKHLLDWEQYYSCYDLNKLNYFKPMFDYKKQRELSLKTY 468 >gi|256790273|ref|ZP_05528704.1| deoxyribodipyrimidine photolyase [Streptomyces lividans TK24] gi|289774148|ref|ZP_06533526.1| deoxyribodipyrimidine photolyase [Streptomyces lividans TK24] gi|289704347|gb|EFD71776.1| deoxyribodipyrimidine photolyase [Streptomyces lividans TK24] Length = 457 Score = 208 bits (530), Expect = 2e-51, Method: Compositional matrix adjust. Identities = 140/474 (29%), Positives = 228/474 (48%), Gaps = 50/474 (10%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISA------RQSHF 60 M+V +V +DLR+ D+ L+AA +D +V+ +F+ R GI A + F Sbjct: 1 MTVAVVLFTSDLRLHDHPPLHAALQAAD-EVVPLFV------RDTGIHAAGFDAPNRRAF 53 Query: 61 IYASLLQVQKSLSQKG---------IVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQ 111 + L + SL +G +V + + S E + VT + R+ Sbjct: 54 LADCLSDLDSSLRHRGGRLVVRDGPVVREVRSVAAQCGSTE----VHVAAGVTGYAHRRE 109 Query: 112 YEINEVRRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQ 171 + E RD + + VI + PG++ V+TP+ + + + Sbjct: 110 ERLREGLRDDGVSLHVHEPVITA-------VAPGAVTPAGSDHVAVFTPYFRRWSR---E 159 Query: 172 ADLRSLPVP-AIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHI-LRKFCKEKVYY 229 + + L P +R+ V +P D P P G + A ++ + + Sbjct: 160 SPRKPLAAPRTVRVPRGVRGEPLPDRAD--VAGASPGLPAGGETAGRDRFARWSRSGLSR 217 Query: 230 YVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWRE 289 Y ++ D A TS+LSPYL G LSP + +R + GA +++ ++ WR+ Sbjct: 218 YEDRHDDLADDATSRLSPYLHFGALSPLELVHRARAHG-------GPGAEAFVRQVCWRD 270 Query: 290 FYRHLMAFYPSVCMGKPFIPWTEKIEWNKDS-HLLQAWKQGYTGFPIIDAAMRQLNTIGW 348 F+ ++A P + K + ++ +D+ + AW+ G TG+P++DAAMRQL GW Sbjct: 271 FHHQVLAARPEASV-KDYRTRHDRWRGEEDAAEDIAAWRDGRTGYPVVDAAMRQLRHQGW 329 Query: 349 MHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRI 408 MHNR R++ A FL K L VDWRIG +F+ L+DGD+ +N WQWAA TG D+ P+ R+ Sbjct: 330 MHNRARLLVAGFLTKTLYVDWRIGARHFLDLLVDGDVVNNQLNWQWAAGTGTDTRPH-RV 388 Query: 409 FNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVD 462 NP +Q +RFDP G ++R W+PEL +V +H P L+YP P+V+ Sbjct: 389 LNPLVQARRFDPDGVYVRRWVPELRSVEGGKVHEPWRLAAAERGELDYPDPLVE 442 >gi|34557872|ref|NP_907687.1| deoxyribodipyrimidine photo-lyase [Wolinella succinogenes DSM 1740] gi|34483590|emb|CAE10587.1| DEOXYRIBODIPYRIMIDINE PHOTOLYASE DNA PHOTOLYASEPHOTOREACTIVATING ENZYME [Wolinella succinogenes] Length = 447 Score = 208 bits (529), Expect = 2e-51, Method: Compositional matrix adjust. Identities = 140/467 (29%), Positives = 228/467 (48%), Gaps = 41/467 (8%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 L+W R DLR+ DN+ + +V+ +FI R+ +IY +++++ Sbjct: 4 LIWFRRDLRLEDNRTF----EQASGEVLPLFIFDSHLLSPLPKEDRRVGYIYGEVMRLKS 59 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130 L +G+ + + ++ L S +Q ++LF ++ Y+ + RD+ + L R Sbjct: 60 ELRARGLDLAIF----YGEPLKIL-SRLKEQGFSRLFASQDYDSYALSRDEAARELLDCR 114 Query: 131 VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTP 190 + D+ L P +L Y +++ + ++ L + + L + P Sbjct: 115 FVL----DNYLFDPNEVLKKEGSPYTIFSAYYNQSLKILSEGHY----AKGLDLPKKLAP 166 Query: 191 SNIPRFFDYPFQAIDPMFPIGEQNALHIL-RKFCKE---KVYYYVEQRDIPAIQGTSQLS 246 IP P+ P+ E +L IL +K +E K+ Y RD + TS LS Sbjct: 167 YPIPAPPSLESMGFSPL-PLLE--SLKILPQKRLEEFSSKITRYALDRDSLEAEATSGLS 223 Query: 247 PYLSIGVLSPRQCWNRLK---EEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCM 303 +L G L R+ RLK EE + + P + +++WREFY L+ +P Sbjct: 224 LFLRFGTLGVREVIRRLKVWQEEGIK--VAP------FYRQILWREFYAMLLYHFPH-SE 274 Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363 + F P ++ W++ L+ W++G G P++DA MR+LN G+MHNR RM+ ASFL K Sbjct: 275 REDFKPM--QMRWSESQERLERWQKGECGVPLVDAGMRELNHTGFMHNRARMVCASFLTK 332 Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423 +L + W GE YF S+LLD D+A N G WQW A +G D+ P+FRIFNP Q +FDP+G Sbjct: 333 NLHLHWSWGERYFASKLLDYDVAQNAGNWQWCAGSGADAQPFFRIFNPYTQSLKFDPKGE 392 Query: 424 FIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHT 470 +++ W+PEL + TQ + W L Y PIV K++ Sbjct: 393 YVKRWIPELRGISTQNWSSEERW---EGLKERYLAPIVSAKRSAQEA 436 >gi|293191025|ref|ZP_06609069.1| deoxyribodipyrimidine photolyase family protein [Actinomyces odontolyticus F0309] gi|292820712|gb|EFF79678.1| deoxyribodipyrimidine photolyase family protein [Actinomyces odontolyticus F0309] Length = 475 Score = 207 bits (528), Expect = 2e-51, Method: Compositional matrix adjust. Identities = 148/449 (32%), Positives = 215/449 (47%), Gaps = 44/449 (9%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFI----ATPEQWRQHG---ISARQSHFIYA 63 L+WLR+DLR+ D+ AL AAC +D V+A++I T E +HG + A + + Sbjct: 4 LIWLRDDLRLADHPALTAACSAADGPVVALWIHETRRTDEDNNRHGPRPLGAATRWWYHR 63 Query: 64 SLLQVQKSLSQKGI--VFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDK 121 SL Q+ L+ GI VF +N + +D+ + T + + R+Y R D Sbjct: 64 SLQQLAPRLADLGIPLVFTRGDAANVMRRV--VDAL----QPTVVHWTRRYAPAACRLDA 117 Query: 122 LLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPA 181 +++ L R S S+L P + Y+V+TPF A + +L L P P Sbjct: 118 AIKQELTSRTEVHSHPGSLLAEPWLMQTVNGSHYQVFTPFSHA-VADLPLTSLLPEPSPI 176 Query: 182 IRLTGPVTP-------------SNIPRFFDYPF---QAIDPMFPIGEQNALHILRKFCKE 225 G T +I + P + + + GE A L Sbjct: 177 GERGGADTALATLREDGVLQNLEDIGLLDEGPAWWEETLAQHWEPGELAARQQLDAI-DS 235 Query: 226 KVYYYVEQRDIPAIQ-GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGA--FSWL 282 + Y +RD+P + TS++SP L G LSPRQ SG +W Sbjct: 236 WLPGYATRRDLPGEETSTSRISPRLRCGELSPRQA-------VAAARTSTASGEDIVAWT 288 Query: 283 NELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQ 342 +L WREF HL+ + P P + + D HL +AW+QG TG ++DA MRQ Sbjct: 289 RQLYWREFSWHLL-HHREHLEDTPMRPAFAEFPYYPDDHLARAWRQGRTGIDLVDAGMRQ 347 Query: 343 LNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDS 402 L GWMHNR+RM+ AS L K++L W+ GE++F L+D D A+N WQW A G D+ Sbjct: 348 LWQTGWMHNRVRMVAASLLTKNMLQPWQDGEQWFWETLVDADEANNPISWQWVAGCGADA 407 Query: 403 VPYFRIFNPTIQGKRFDPQGTFIRHWLPE 431 PYFRIFNP +Q RFDP+ ++R W+PE Sbjct: 408 APYFRIFNPDLQRTRFDPRSRYVRRWIPE 436 >gi|19551863|ref|NP_599865.1| deoxyribodipyrimidine photolyase [Corynebacterium glutamicum ATCC 13032] gi|62389521|ref|YP_224923.1| deoxyribodipyrimidine photolyase [Corynebacterium glutamicum ATCC 13032] gi|41324855|emb|CAF19337.1| DEOXYRIBODIPYRIMIDINE PHOTOLYASE [Corynebacterium glutamicum ATCC 13032] Length = 482 Score = 207 bits (528), Expect = 2e-51, Method: Compositional matrix adjust. Identities = 164/505 (32%), Positives = 236/505 (46%), Gaps = 77/505 (15%) Query: 8 SVHLVWLRNDLRITDNKAL-YAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 S L+W R+DLR++DN AL +AA H VI +FI ++ I A + SL Sbjct: 21 SPTLLWFRDDLRLSDNAALKWAADH---GPVIGLFI---DETINRSIGAAARWWREQSLN 74 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 + + LS G+ + +E L + V + +NR+Y D L+K Sbjct: 75 ALAQDLSFYGVPL----LRRTGNPLEILPKIVSEMEVKAVTWNRRYHQPLCEVDATLKKN 130 Query: 127 LQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQ----NLVQADLRSLPVPA 181 L+ + I S +L P + YKV+TPF KA + + + ++PVP+ Sbjct: 131 LRDKGIEVHSHPGFLLTEPWEVSTATGTPYKVFTPFSKAAWEVARVHAYETVKNNVPVPS 190 Query: 182 IRLTGPVTPSNIPRFFDYPFQA---IDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPA 238 LTGP + PF + + P GE+NA L F E + Y + RD A Sbjct: 191 -HLTGPEDVELPILEMEQPFWSTTLVKECAP-GEKNASEKLFDFL-EHLQDYPQARDSLA 247 Query: 239 IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFY 298 TS+LS +L G +S + W + G +L EL+WR+F H + Sbjct: 248 RSATSKLSAHLRFGEISIHRVW-------AETAAIDSEGTELFLKELLWRDFAWHRLYAL 300 Query: 299 PSV-------------------------CMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGF 333 P + P IP T+ ++++D L AW+ G TG Sbjct: 301 PHMDTQNVRMQFNRFGWSWDPSEKDKLNTPSTPLIP-TKADQFHED---LAAWRAGKTGI 356 Query: 334 PIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQ 393 P++DA MR+L G MHNR+RM+ ASFL K+L + WR GEE+F L+D D ASN WQ Sbjct: 357 PLVDAGMRELWATGSMHNRVRMVVASFLTKNLQIHWRHGEEWFWETLVDADPASNAFNWQ 416 Query: 394 WAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLS 453 WAA +G+D+ PYFRIFNP Q K+FDP T+IR W+PE + Sbjct: 417 WAAGSGDDASPYFRIFNPVTQAKKFDPDETYIRRWVPEYG-------------------T 457 Query: 454 LNYPLPIVDHKKACHHTLNQYYAAK 478 +YP PIVD K++ L+ Y A K Sbjct: 458 PSYPDPIVDLKESRQIALDAYSAIK 482 >gi|315499875|ref|YP_004088678.1| DNA photolyase fad-binding protein [Asticcacaulis excentricus CB 48] gi|315417887|gb|ADU14527.1| DNA photolyase FAD-binding protein [Asticcacaulis excentricus CB 48] Length = 484 Score = 207 bits (528), Expect = 3e-51, Method: Compositional matrix adjust. Identities = 153/498 (30%), Positives = 229/498 (45%), Gaps = 49/498 (9%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 ++W R+DLR+ D++ + A NS + V+ V+I EQ Q + A ++ SL + + Sbjct: 6 ILWFRSDLRLQDHEGVEATL-NSGSPVVPVYIYD-EQLAQRPLGAASKWWLDRSLRSLDQ 63 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130 SL +G + S ++ L Q T+L +R +E D L K L Sbjct: 64 SLRARGARLIVLKGS----ALAQLKRLIGQVSATRLIASRTFEPKIDAFDAQLSKALG-- 117 Query: 131 VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTP 190 + + F+ +L P I YKV+TPF +AL L + R A+ P P Sbjct: 118 IPVEIFNTHLLSDPTQIRTGDGNPYKVFTPFYRAL---LARGAARGHARKALATPWPA-P 173 Query: 191 SNIPRFFDYPFQAIDPMFPI--------------GEQNALHILRKFCKEKVYYYVEQRDI 236 + P D + P + GE A L F + + Y RD Sbjct: 174 AEWPESVDIDALGLKPALTLSGHDWSEGFDVWTPGEDGAHQRLSAFLRSGLKGYAPDRDR 233 Query: 237 PAIQGTSQLSPYLSIGVLSPRQCWNRLKEE------FVDLLIKPKSGAFSWLNELIWREF 290 P + TS+LSP+L G +SP + + + D L K ++ EL WR+F Sbjct: 234 PDLDITSRLSPHLRFGEISPHRVLHEAEAHAAAHPALSDDLEKFRA-------ELAWRDF 286 Query: 291 YRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMH 350 +++ P + F + + W D L+AW++G TG+ ++DA MRQL G+MH Sbjct: 287 SYNILQLQPELDRVN-FKSAFDAMPWRDDPAGLRAWQRGETGYSLVDAGMRQLWRTGFMH 345 Query: 351 NRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFN 410 NR+RM+ ASFL K LL+DWR GE++F L+D D ASN WQW A +G D+ PYFRIFN Sbjct: 346 NRVRMVCASFLSKHLLIDWRQGEQWFWDTLVDADPASNTASWQWVAGSGADAAPYFRIFN 405 Query: 411 PTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKN---------DLSLNYPLPIV 461 P Q ++FDP+G + R ++ A H +++ S P IV Sbjct: 406 PLTQAEKFDPKGAYRRRFVSGFTEKIAGAASAHHQKFERDLFDFAGVSASNSKGAPRLIV 465 Query: 462 DHKKACHHTLNQYYAAKK 479 DH A L+ Y KK Sbjct: 466 DHAVARQRALDAYAQMKK 483 >gi|332557576|ref|ZP_08411898.1| deoxyribodipyrimidine photo-lyase [Rhodobacter sphaeroides WS8N] gi|332275288|gb|EGJ20603.1| deoxyribodipyrimidine photo-lyase [Rhodobacter sphaeroides WS8N] Length = 471 Score = 207 bits (528), Expect = 3e-51, Method: Compositional matrix adjust. Identities = 145/478 (30%), Positives = 220/478 (46%), Gaps = 33/478 (6%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 ++W R DLR+ DN L A +I +FI PE + A + + + Sbjct: 8 ILWFRRDLRLADNPMLAEAAATGR-PLIPLFILDPET---EALGAAPKWRLGLGVEAFAR 63 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130 +L G + ++ L++ + + ++R +E RD+ ++ L+ Sbjct: 64 ALEGLGSRLVLRRGP----ALAVLEALVAETGAAGVHWSRLWEPAWRARDEGVKAGLRQA 119 Query: 131 VI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP-- 187 I S + P + Y+VYTPF KA+ V A S P PA RL P Sbjct: 120 GIEAASHAGHTIFEPWEVETGQGGFYRVYTPFWKAVKDRPVAA---SFPPPA-RLPSPAE 175 Query: 188 ------VTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQG 241 + ++ R + + P +GE A L +F + Y +RD P Sbjct: 176 WPVSERLASWDLGRAMNRGAAVVAPHLAVGEAAAAERLTRFMSGPLDRYAAERDRPDAPV 235 Query: 242 TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSV 301 TS+LS L+ G +S R W+ + + ++GA +L EL WREF HL+ P + Sbjct: 236 TSRLSENLTYGEISARSLWH----AGMRARAEGRAGAEKFLQELAWREFGWHLLYHTPEI 291 Query: 302 CMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFL 361 W + W D+ + W++G TG P +DAAMR+L G MHNR R+I S+L Sbjct: 292 ARRNWRGDW-DAFPWRGDNPDAERWRRGMTGEPFVDAAMRELFVTGTMHNRARLIAGSYL 350 Query: 362 VKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQ 421 K LL DWR+G+ +F L+D D ASN GWQW A +G D+ PYFRIFNP Q ++FDP+ Sbjct: 351 TKHLLTDWRVGKAWFEDCLIDWDPASNALGWQWVAGSGPDASPYFRIFNPATQAEKFDPE 410 Query: 422 GTFIRHWLPELNNVPT----QYIHA-PHSWLDKNDLSLNYPLPIVDHKKACHHTLNQY 474 + + +L E+ P ++ A P SW + D YP P+V + L Y Sbjct: 411 SAYRQRFLAEIARRPGPEALAFLEAVPRSWGLRPDRC--YPRPVVGLAEGRERALAAY 466 >gi|38232742|ref|NP_938509.1| putative riboflavin biosynthesis protein [Corynebacterium diphtheriae NCTC 13129] gi|38199000|emb|CAE48617.1| Putative riboflavin biosynthesis protein [Corynebacterium diphtheriae] Length = 446 Score = 207 bits (528), Expect = 3e-51, Method: Compositional matrix adjust. Identities = 155/482 (32%), Positives = 224/482 (46%), Gaps = 54/482 (11%) Query: 11 LVWLRNDLRITDNKALYAA---CHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67 +VW R+DLR+ DN AL A + A + AV+IA R G + + +++ SLL Sbjct: 6 VVWFRDDLRVHDNPALMKAWELVRANPADLHAVYIANEVGVRPLGGAVKW--WLHHSLLA 63 Query: 68 VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYE-INEVRRDKLLEKR 126 + + L+Q+G+ + H S D + L T + NR+Y+ D + Sbjct: 64 LSEQLAQRGV--RLHVLSG--DPLTLLPQLVTSCGATAVTMNRRYDPAARSIDDAFVADA 119 Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 H V F +L PG I YKV+TPF + L + L +L P + Sbjct: 120 SAHDVEVYDFPCHLLAEPGEITTTTGGSYKVFTPFSRNLRDAIGDLPLDTLAAPP-KAEQ 178 Query: 187 PVTPSNI-PRFFDYPFQA-----IDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ 240 P+ + D + A I + GE A L + + + Y++ RD P I Sbjct: 179 PIDDTETQAAIADLGWDAWWAASISKAWTPGEPAAREALAEL-DDILPRYLDDRDRPDID 237 Query: 241 GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPS 300 GTS+LSP L G LS + WN S F +L+WR+F H + +P Sbjct: 238 GTSRLSPRLRFGELSVAEVWNHAH----------TSEGFR--RQLMWRDFAWHRLDAHPD 285 Query: 301 VCMGKPFIPWTEKIEWNKDS--HLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITA 358 + P + W+ L AW+ G TG ++DA MR+L G MHNR+RM+ A Sbjct: 286 MATAN-IRPEFDHFPWDGGDFEAELNAWRHGRTGIALVDAGMRELWATGTMHNRVRMVAA 344 Query: 359 SFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRF 418 S LVK+L + WR GE++F L+D D ASN WQW A +G+D+ PYFRIFNP Q +RF Sbjct: 345 SLLVKNLGIHWRHGEQWFWDTLVDADPASNPFNWQWVAGSGDDAAPYFRIFNPDTQARRF 404 Query: 419 DPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYP-LPIVDHKKACHHTLNQYYAA 477 DP GT+ WLP +S +YP IVD K++ L+ Y A Sbjct: 405 DPDGTYRTRWLPI--------------------MSADYPEEAIVDLKESRLRALDAYNAC 444 Query: 478 KK 479 K+ Sbjct: 445 KR 446 >gi|21323395|dbj|BAB98023.1| Deoxyribodipyrimidine photolyase [Corynebacterium glutamicum ATCC 13032] Length = 468 Score = 207 bits (527), Expect = 3e-51, Method: Compositional matrix adjust. Identities = 164/505 (32%), Positives = 236/505 (46%), Gaps = 77/505 (15%) Query: 8 SVHLVWLRNDLRITDNKAL-YAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 S L+W R+DLR++DN AL +AA H VI +FI ++ I A + SL Sbjct: 7 SPTLLWFRDDLRLSDNAALKWAADH---GPVIGLFI---DETINRSIGAAARWWREQSLN 60 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 + + LS G+ + +E L + V + +NR+Y D L+K Sbjct: 61 ALAQDLSFYGVPL----LRRTGNPLEILPKIVSEMEVKAVTWNRRYHQPLCEVDATLKKN 116 Query: 127 LQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQ----NLVQADLRSLPVPA 181 L+ + I S +L P + YKV+TPF KA + + + ++PVP+ Sbjct: 117 LRDKGIEVHSHPGFLLTEPWEVSTATGTPYKVFTPFSKAAWEVARVHAYETVKNNVPVPS 176 Query: 182 IRLTGPVTPSNIPRFFDYPFQA---IDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPA 238 LTGP + PF + + P GE+NA L F E + Y + RD A Sbjct: 177 -HLTGPEDVELPILEMEQPFWSTTLVKECAP-GEKNASEKLFDFL-EHLQDYPQARDSLA 233 Query: 239 IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFY 298 TS+LS +L G +S + W + G +L EL+WR+F H + Sbjct: 234 RSATSKLSAHLRFGEISIHRVW-------AETAAIDSEGTELFLKELLWRDFAWHRLYAL 286 Query: 299 PSV-------------------------CMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGF 333 P + P IP T+ ++++D L AW+ G TG Sbjct: 287 PHMDTQNVRMQFNRFGWSWDPSEKDKLNTPSTPLIP-TKADQFHED---LAAWRAGKTGI 342 Query: 334 PIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQ 393 P++DA MR+L G MHNR+RM+ ASFL K+L + WR GEE+F L+D D ASN WQ Sbjct: 343 PLVDAGMRELWATGSMHNRVRMVVASFLTKNLQIHWRHGEEWFWETLVDADPASNAFNWQ 402 Query: 394 WAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLS 453 WAA +G+D+ PYFRIFNP Q K+FDP T+IR W+PE + Sbjct: 403 WAAGSGDDASPYFRIFNPVTQAKKFDPDETYIRRWVPEYG-------------------T 443 Query: 454 LNYPLPIVDHKKACHHTLNQYYAAK 478 +YP PIVD K++ L+ Y A K Sbjct: 444 PSYPDPIVDLKESRQIALDAYSAIK 468 >gi|164655927|ref|XP_001729092.1| hypothetical protein MGL_3880 [Malassezia globosa CBS 7966] gi|159102981|gb|EDP41878.1| hypothetical protein MGL_3880 [Malassezia globosa CBS 7966] Length = 400 Score = 207 bits (527), Expect = 3e-51, Method: Compositional matrix adjust. Identities = 114/265 (43%), Positives = 151/265 (56%), Gaps = 29/265 (10%) Query: 206 PMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKE 265 P P G + A HIL +F K KV Y E RDIP GTSQLSPYL+ G +SP + + L+E Sbjct: 29 PWIP-GSETAHHILTEFLKTKVSRYSESRDIPFESGTSQLSPYLAHGEISPHRVLHALRE 87 Query: 266 EFVDLLI-KPK-SGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPW-----------TE 312 ++ KP + ++ ELIWREF HL+ P + W ++ Sbjct: 88 VRLNRDTPKPAIESSKTFERELIWREFNYHLLYHQPDLATQNHNEQWNLFTWSQMATESQ 147 Query: 313 KIEWNKDSHL---------------LQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMIT 357 E+++ L W+ G+TGFPI+DA MRQL IGWMHNR+RMIT Sbjct: 148 LTEFSRTGELPPSTDEQNALNTAAAYDCWRAGHTGFPIVDAGMRQLWKIGWMHNRVRMIT 207 Query: 358 ASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKR 417 AS L+K+L + WR+GEE+F + L+D D ASN G WQW A TG D+ P+FRIFNP Q R Sbjct: 208 ASLLIKNLRIHWRLGEEWFWNTLVDADPASNPGNWQWVAGTGADAAPFFRIFNPARQADR 267 Query: 418 FDPQGTFIRHWLPELNNVPTQYIHA 442 FD + ++R W+PEL TQ + A Sbjct: 268 FDQKCAYVRTWVPELKTKTTQEVAA 292 >gi|239636691|ref|ZP_04677693.1| deoxyribodipyrimidine photo-lyase [Staphylococcus warneri L37603] gi|239598046|gb|EEQ80541.1| deoxyribodipyrimidine photo-lyase [Staphylococcus warneri L37603] Length = 456 Score = 207 bits (527), Expect = 3e-51, Method: Compositional matrix adjust. Identities = 123/330 (37%), Positives = 173/330 (52%), Gaps = 18/330 (5%) Query: 142 LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPF 201 P N+ + YKV+T F K ++Q + I + V P+ P Sbjct: 129 FSPRKTFNNQGEPYKVFTSFYKKWRPYVMQRHRAHYELSDI--SKIVEPAYAPT------ 180 Query: 202 QAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWN 261 Q D + E+ + F + Y R TSQLS L+ G++ Q +N Sbjct: 181 QINDSHSGLTEKEVQQQWQSFLNNDIQNYESNRAYLPEVLTSQLSIALAYGLIDILQVFN 240 Query: 262 RLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSH 321 L + + +S +++ ELI+REFY LM YP + F I+W D Sbjct: 241 DLLQGYE----SDESNYEAFIRELIFREFYYVLMTQYPETA-HQSFKEKYRNIDWVNDKQ 295 Query: 322 LLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLL 381 WK G TG+PI+DAAM++LN G+MHNR+RM+T+ FL KDLL+DWR GE YF +L+ Sbjct: 296 QFNKWKNGETGYPIVDAAMQELNQTGYMHNRMRMVTSQFLTKDLLIDWRWGETYFKDKLI 355 Query: 382 DGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIH 441 D D ASN GWQW+ASTG D+VPYFR+FNP Q +RFD +I+ WLP NNV + +H Sbjct: 356 DYDNASNVHGWQWSASTGTDAVPYFRMFNPIKQSERFDQNALYIKQWLPTFNNVDSHLLH 415 Query: 442 --APHSWLDKN---DLSLNYPLPIVDHKKA 466 H L K +L ++YP P+V+H + Sbjct: 416 DTKKHMQLLKQQGIELGIDYPEPMVNHSDS 445 >gi|322510730|gb|ADX06044.1| putative deoxyribodipyrimidine photo-lyase [Organic Lake phycodnavirus 1] Length = 443 Score = 207 bits (526), Expect = 4e-51, Method: Compositional matrix adjust. Identities = 152/475 (32%), Positives = 233/475 (49%), Gaps = 48/475 (10%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 L R D R+ DN L A N VI +FI TPEQ ++ H + L + + Sbjct: 4 LFIFRRDFRVQDNVGLNYAMTNF-KNVIPIFIFTPEQIDKNKNKYFSDHSV-QFLCECLE 61 Query: 71 SLSQK-GIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH 129 L +K G+ Y N SI +T + +N+ Y +RDK +E+ Q Sbjct: 62 ELKEKIGLHIFYGDYMNVIRSIH------KDHHLTHIVFNQDYSPYSRKRDKTIEQWCQS 115 Query: 130 RVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188 I C +D +L P G+ Y VYTPF+ + QN S+P+P R + Sbjct: 116 EQIDCIMTEDYLLQPIGTFNKKDGSPYVVYTPFKDNIFQN------HSVPMPKKRGVKHI 169 Query: 189 TPSNI---PRF---FDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGT 242 + P + DY + G ++ L L+K + +R+ + T Sbjct: 170 KHIDFRSNPYYKEKMDYYVYNKHNLVKGGRKHGLKQLKKS------HATYERNKLNTE-T 222 Query: 243 SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVC 302 + LS Y+ G LS R+ ++ K++ DL ++L+WREF+ ++ ++P + Sbjct: 223 THLSSYIKYGCLSIREVYHSFKDD--DLK-----------SQLVWREFFYYINYYFPELI 269 Query: 303 -MGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFL 361 K + + I+W ++ L AWK G TGFP++DA MRQLN G+MHNR R+I+A+FL Sbjct: 270 DKSKSYQSKYDAIKWVQNKKHLDAWKHGQTGFPVVDACMRQLNHSGYMHNRGRLISANFL 329 Query: 362 VKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYF-RIFNPTIQGKRFDP 420 + L ++WR GE YF L+D D NN WQW +S G D+ PY R+FNP +Q KRFD Sbjct: 330 NRILGINWRSGELYFAQTLIDYDPCVNNANWQWVSSVGIDTKPYSQRVFNPWLQSKRFDA 389 Query: 421 QGTFIRHWLPELNNVPTQYIHAPHSW-LDKNDLSLNYPLPIVDHKKACHHTLNQY 474 Q +I+ W+PEL +V + I H W + +++YP P+VD+ +L Y Sbjct: 390 QCDYIKKWIPELKDVAPKDI---HQWDISCKQYNVDYPCPMVDYALCRERSLKMY 441 >gi|119960573|ref|YP_946305.1| deoxyribodipyrimidine photolyase [Arthrobacter aurescens TC1] gi|119947432|gb|ABM06343.1| putative deoxyribodipyrimidine photolyase [Arthrobacter aurescens TC1] Length = 465 Score = 207 bits (526), Expect = 4e-51, Method: Compositional matrix adjust. Identities = 152/493 (30%), Positives = 218/493 (44%), Gaps = 60/493 (12%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M +VW R+DLR+ DN AL AA + A + V R HG +AR +++ SL Sbjct: 1 MKPSIVWFRDDLRVADNPALRAAVDDGAAVALYVLDEESPGIRPHGGAARW--WLHHSLT 58 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 ++ L + G+ + D L L++NR+Y E D ++ Sbjct: 59 ALRGDLDKLGVPLLLRRGPATDV----LRETTTAIGAGGLYWNRRYGSAERTVDADIKAW 114 Query: 127 LQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185 + SF S+L P + YKV+TPF + + + L ++P T Sbjct: 115 AGEAGLHVSSFQASLLHEPWEVTTKTGGQYKVFTPFWRTVSAQDFREPL-AVPEAGHGFT 173 Query: 186 GPVTPSN-------IPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPA 238 G + + +P D+ + M+ G L +F + + Y E R+ P Sbjct: 174 GKLPVYDQLESWQLLPTKPDWS-GGLAEMWTPGAAAGHKRLARFVADGLSNYSEGRNRPD 232 Query: 239 IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFY 298 G+S LSPYL G LSP + W+ L K A + +EL WREF H Sbjct: 233 TDGSSCLSPYLRWGELSPFEVWHALGS-------KRSESASIYASELGWREFCWHQYFHN 285 Query: 299 PSVCMGKPFIPWTEKIEW-----------------NKDSHLLQAWKQGYTGFPIIDAAMR 341 P + P ++ W +AW+QG TGFP++DA R Sbjct: 286 PQLATAN-LRPEFDRFPWAWPGKNGNGNGGRHPGHESAPEEFRAWQQGRTGFPMVDAGQR 344 Query: 342 QLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGND 401 QL GWMHNR+RM+ ASFLVK+L + W++GE++F L+D D ASN WQW A +G D Sbjct: 345 QLWHTGWMHNRVRMVAASFLVKNLGIHWQLGEQWFWDTLVDADPASNPANWQWVAGSGAD 404 Query: 402 SVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIV 461 + P+FRIFNP Q +FDPQG +I HWLP+ + YP IV Sbjct: 405 ASPFFRIFNPEAQRVKFDPQGRYIAHWLPDFG-------------------TPEYPEEIV 445 Query: 462 DHKKACHHTLNQY 474 D K L Y Sbjct: 446 DLKTTRAEALEAY 458 >gi|77462693|ref|YP_352197.1| deoxyribodipyrimidine photo-lyase type I [Rhodobacter sphaeroides 2.4.1] gi|77387111|gb|ABA78296.1| Deoxyribodipyrimidine photo-lyase type I [Rhodobacter sphaeroides 2.4.1] Length = 471 Score = 206 bits (525), Expect = 5e-51, Method: Compositional matrix adjust. Identities = 145/477 (30%), Positives = 219/477 (45%), Gaps = 31/477 (6%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 ++W R DLR+ DN L A +I +FI PE + A + + + Sbjct: 8 ILWFRRDLRLADNPMLAEAAATGR-PLIPLFILDPET---EALGAAPKWRLGLGVEAFAR 63 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130 +L G + ++ L++ + + ++R +E + RD+ ++ L+ Sbjct: 64 ALEGLGSRLVLRRGP----ALAVLEALVAETGAAGVHWSRLWEPDWRARDEGVKAGLRQA 119 Query: 131 VI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG--- 186 I S + P + Y+VYTPF KA+ V A S P PA L+ Sbjct: 120 GIEAASHAGHTIFEPREVETGQGGFYRVYTPFWKAVKDRPVAA---SSPPPARLLSPAEW 176 Query: 187 PVTPS----NIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGT 242 PV+ ++ R + P +GE A L +F + Y +RD P T Sbjct: 177 PVSERLACWDLGRAMHRGAAVVAPHLAVGEAAAAERLTRFLSGPLDRYAAERDRPDAPVT 236 Query: 243 SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVC 302 S+LS L+ G +S R W+ + + ++GA +L EL WREF HL+ P + Sbjct: 237 SRLSENLTYGEISARSLWH----AGMRARAEGRAGAEKFLQELAWREFGWHLLYHTPEIA 292 Query: 303 MGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLV 362 W + W D+ + W++G TG P +DAAMR+L G MHNR R+I S+L Sbjct: 293 RRNWRGDW-DAFPWRGDNPDAERWRRGMTGEPFVDAAMRELFVTGTMHNRARLIAGSYLT 351 Query: 363 KDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQG 422 K LL DWR+G+ +F L+D D ASN GWQW A +G D+ PYFRIFNP Q ++FDP+ Sbjct: 352 KHLLTDWRVGQAWFEDCLIDWDPASNALGWQWVAGSGPDASPYFRIFNPATQAEKFDPES 411 Query: 423 TFIRHWLPELNNVPTQYIHA-----PHSWLDKNDLSLNYPLPIVDHKKACHHTLNQY 474 + + +L E+ P A P SW + D YP P+V + L Y Sbjct: 412 AYRQRFLAEIARRPGPEALAFFEAVPRSWGLRPDRC--YPRPVVGLAEGRERALAAY 466 >gi|21219363|ref|NP_625142.1| deoxyribodipyrimidine photolyase [Streptomyces coelicolor A3(2)] gi|5459246|emb|CAB48919.1| putative deoxyribodipyrimidine photolyase [Streptomyces coelicolor A3(2)] Length = 458 Score = 206 bits (525), Expect = 5e-51, Method: Compositional matrix adjust. Identities = 138/445 (31%), Positives = 215/445 (48%), Gaps = 30/445 (6%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M+ +V DLR+ D+ L AA SDA V+ +F+ G +A + A L Sbjct: 1 MATSVVLFTRDLRLHDHPPLRAALDRSDA-VVPLFVRD-RAVDAAGFAAPNRLALLADCL 58 Query: 67 Q-VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125 + + L +G D +E + + + ++ + RR++LL Sbjct: 59 RDLDSGLRDRGGRLVVRSG----DLVEEVCAVAGEAEADEVHLAADVSAHAHRREELLRS 114 Query: 126 RLQHRVICKSFDDSV--LLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPA-I 182 L R D+V +L PGS+ + + V+TP+ + + V+ L P + Sbjct: 115 ALSARGCRLHVHDAVTTVLAPGSVTPASSDHFAVFTPYFRRWSERAVR---EPLAAPRRV 171 Query: 183 RLTGPVTPSNIPRFFDYPFQAIDPMFPIG-EQNALHILRKFCKEKVYYYVEQRDIPAIQG 241 R+ V +P D + P P G E++A L + + + Y + D A Sbjct: 172 RVPDGVGSEPLPARGD--LTGLSPGLPTGGERDARKRLTAWLRGGIADYADHHDDLAGDA 229 Query: 242 TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSV 301 TS+LSP L +G LSP + +R + GA +++ +L WR+F+ ++A P Sbjct: 230 TSRLSPDLHLGALSPVELVHRARRAG-------GPGAEAFVRQLAWRDFHHQVLAARPHA 282 Query: 302 CMGKPFIPWTEKIEWNKDSHLLQA---WKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITA 358 T W + W+ G TG+P++DAAMRQL GWMHNR R++ A Sbjct: 283 SAADYR---TRHDRWRTGAAAEADAAAWRDGRTGYPVVDAAMRQLRHEGWMHNRGRLLVA 339 Query: 359 SFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRF 418 SFL K L VDWR+G +F+ L+DGD+A+N WQWAA TG D+ P+ R+ NPT Q +RF Sbjct: 340 SFLTKTLYVDWRVGAWHFLELLVDGDVANNQLNWQWAAGTGTDTRPH-RVLNPTTQARRF 398 Query: 419 DPQGTFIRHWLPELNNVPTQYIHAP 443 DP GT++R W+PEL + + +H P Sbjct: 399 DPGGTYVRRWVPELAGLAGRSVHEP 423 >gi|296171175|ref|ZP_06852623.1| deoxyribodipyrimidine photolyase [Mycobacterium parascrofulaceum ATCC BAA-614] gi|295894311|gb|EFG74066.1| deoxyribodipyrimidine photolyase [Mycobacterium parascrofulaceum ATCC BAA-614] Length = 443 Score = 206 bits (525), Expect = 5e-51, Method: Compositional matrix adjust. Identities = 120/342 (35%), Positives = 176/342 (51%), Gaps = 32/342 (9%) Query: 141 LLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPSN--IPRFFD 198 L+ PG + Y+V+TPF ++ + RS + P IP+ D Sbjct: 123 LVSPGRVTKQDGTPYQVFTPF----LRKWREVGWRSPAKSGAESAHWIDPDQVAIPQC-D 177 Query: 199 YPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQ 258 P GE+ AL F + + Y RD P ++ TS++S +L G + PR Sbjct: 178 IPDPGATLDLAAGERAALFEWEAFVNDGLERYAADRDRPDLEATSRMSAHLKFGSIHPRT 237 Query: 259 CWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEW-- 316 DL ++ + GA ++L EL +R+FY ++ +P+ + W + + Sbjct: 238 M-------VADLDLR-EPGAQAYLRELAFRDFYADVLHHWPASA----WRNWNHQFDGIR 285 Query: 317 ----NKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIG 372 + ++WK G TGFP++DA MRQL G++HNR+RMI ASFLVKDL + W+ G Sbjct: 286 TDTGAEAKRRFESWKAGETGFPLVDAGMRQLRETGFVHNRVRMIVASFLVKDLHLPWQWG 345 Query: 373 EEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPEL 432 E+F+ QL+DGD+A+N GWQW A G D+ PYFR+FNPT Q +FDP G +IR W+PEL Sbjct: 346 AEWFLDQLVDGDMANNQHGWQWCAGCGTDAAPYFRVFNPTSQAAKFDPSGDYIRRWVPEL 405 Query: 433 NNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQY 474 +V + L K + YP PIVDH L +Y Sbjct: 406 RSVDDAH-------LRKGERPAGYPAPIVDHGAERAEALRRY 440 >gi|258541536|ref|YP_003186969.1| deoxyribodipyrimidine photolyase [Acetobacter pasteurianus IFO 3283-01] gi|256632614|dbj|BAH98589.1| deoxyribodipyrimidine photolyase [Acetobacter pasteurianus IFO 3283-01] gi|256635671|dbj|BAI01640.1| deoxyribodipyrimidine photolyase [Acetobacter pasteurianus IFO 3283-03] gi|256638726|dbj|BAI04688.1| deoxyribodipyrimidine photolyase [Acetobacter pasteurianus IFO 3283-07] gi|256641780|dbj|BAI07735.1| deoxyribodipyrimidine photolyase [Acetobacter pasteurianus IFO 3283-22] gi|256644835|dbj|BAI10783.1| deoxyribodipyrimidine photolyase [Acetobacter pasteurianus IFO 3283-26] gi|256647890|dbj|BAI13831.1| deoxyribodipyrimidine photolyase [Acetobacter pasteurianus IFO 3283-32] gi|256650943|dbj|BAI16877.1| deoxyribodipyrimidine photolyase [Acetobacter pasteurianus IFO 3283-01-42C] gi|256653934|dbj|BAI19861.1| deoxyribodipyrimidine photolyase [Acetobacter pasteurianus IFO 3283-12] Length = 309 Score = 206 bits (525), Expect = 5e-51, Method: Compositional matrix adjust. Identities = 116/257 (45%), Positives = 150/257 (58%), Gaps = 11/257 (4%) Query: 211 GEQNALHILRKFCKEKVYYYVEQRD-IPAIQGTSQLSPYLSIGVLSPRQCWNRLK--EEF 267 GE+ A L +F + + Y QRD A GTS LSPY+ +G +S RQ W+ ++ E Sbjct: 46 GEKAAHANLHRFIENALADYETQRDRADAPHGTSLLSPYIRVGQISVRQIWHAIRHAEHQ 105 Query: 268 VDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWK 327 L P A +L EL WR+F M P + + + + W D+ L AW+ Sbjct: 106 NPHLATP---AEKFLAELGWRDFAWMQMFTTPDLAT-RNLRAEFDHMPWRADAADLAAWQ 161 Query: 328 QGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLAS 387 QG TGFP++DA MRQL GWMHNR+RM+ ASFL K LL DWR GE +F +QLLD D A Sbjct: 162 QGQTGFPLVDAGMRQLARTGWMHNRVRMVVASFLTKHLLTDWREGERWFYAQLLDADAAV 221 Query: 388 NNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWL 447 N WQW A TG D+ P+FRIFNP Q +++DP G +IR W+PEL + + IH P W Sbjct: 222 NAMNWQWGAGTGIDAAPWFRIFNPVGQSEKYDPAGQYIRTWVPELAALDNKTIHTP--W- 278 Query: 448 DKNDLSLNYPLPIVDHK 464 K+ L YP PIVD K Sbjct: 279 -KSTQRLKYPAPIVDLK 294 >gi|332185330|ref|ZP_08387079.1| DNA photolyase family protein [Sphingomonas sp. S17] gi|332015054|gb|EGI57110.1| DNA photolyase family protein [Sphingomonas sp. S17] Length = 455 Score = 206 bits (524), Expect = 6e-51, Method: Compositional matrix adjust. Identities = 150/480 (31%), Positives = 226/480 (47%), Gaps = 51/480 (10%) Query: 8 SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFI---ATPEQWRQHGISARQSHFIYAS 64 S H+VW R DLR+ D AL AA V+ V+I TP W+ G H + Sbjct: 3 SPHIVWFRQDLRLHDQPALLAAAEA--GPVLPVYILDDETPGDWKMGGAQRWWLHHSLEA 60 Query: 65 LLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLE 124 L + K+L + I+ + ++E L + + + R YE + + L Sbjct: 61 LAKDLKALGSRLILRRGR-------AVEVLQALSKEAGAEAIHAIRHYEPWWRKAEDELG 113 Query: 125 KRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL 184 RL C +D + L P + + + +++Y+ F K L ++ L P L Sbjct: 114 DRL-----CL-YDGNHLARPELVTTGSGKPFRIYSAFWKGLQGHMPPE--HPLEAPDA-L 164 Query: 185 TGPVTPSNIPRFFDYPF--------QAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDI 236 T P + D+ D + GE A + F K Y R++ Sbjct: 165 TAPDRWPASDKLADWDLLPTKPDWSTGFDADWTPGEATARERMADFVA-KAAAYDTARNM 223 Query: 237 PAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMA 296 P+ +G+S+LSP+L G +SPR W+ L K+ ++ EL WR+F ++ Sbjct: 224 PSEEGSSRLSPHLHFGEVSPRAVWHALDR---------KAETETFRKELAWRDFTDGVVM 274 Query: 297 FYPSVC--MGKPF---IPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHN 351 P G+ +PW + E D L+AW+ G+TG+PI+DA MRQL T GWMHN Sbjct: 275 AIPDYADRNGREAFDKMPWRKGAEAEAD---LKAWRTGHTGYPIVDAGMRQLWTTGWMHN 331 Query: 352 RLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNP 411 R+RMITASFL+K LL+DWR GE +F L+D D +N+ WQW A TG D+ + RI P Sbjct: 332 RVRMITASFLIKHLLIDWREGERWFWDCLVDADYGNNSVNWQWVAGTGIDANMFGRIMAP 391 Query: 412 TIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTL 471 Q ++FD G +IR W+PEL ++ IH P + +YP I+ H++ L Sbjct: 392 LSQSEKFD-AGDYIREWVPELKDLSDAAIHDPD---EAGCRPKDYPAKIIGHREGRERAL 447 >gi|239983112|ref|ZP_04705636.1| deoxyribodipyrimidine photolyase [Streptomyces albus J1074] gi|291454944|ref|ZP_06594334.1| deoxyribodipyrimidine photolyase [Streptomyces albus J1074] gi|291357893|gb|EFE84795.1| deoxyribodipyrimidine photolyase [Streptomyces albus J1074] Length = 457 Score = 206 bits (524), Expect = 6e-51, Method: Compositional matrix adjust. Identities = 139/463 (30%), Positives = 224/463 (48%), Gaps = 30/463 (6%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M+V +V +DLR+ D AL AA +DA V+ +F+ + ++ F+ L Sbjct: 1 MTVSIVLFTSDLRLHDQPALRAALDATDA-VVPLFVRDDAVAEAGFAAPNRAAFLADCLT 59 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWL-----DSYCLQQRVTKLFYNRQYEINEVRRDK 121 + SL ++G ++ + D L + V+ F R+ E + Sbjct: 60 DLDHSLRERGGRLVIRSGDLVEEVCRVVTEADADEVHLAEGVSA-FARRREERLREALES 118 Query: 122 LLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTP-FRKALIQNLVQADLRSLPVP 180 + H + + LPPG++ + + V+TP FRK Q+L L P Sbjct: 119 EGRRLFVHEGVTTA------LPPGAVTPASSDHFAVFTPYFRKWSEQHLRH----PLGAP 168 Query: 181 -AIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAI 239 +R+ + +P D + + GE L + + Y +Q D A Sbjct: 169 RTVRVPDGIGSEKVPARGDVRGVSAG-LAAGGESEGRDRLTAWLRRDAGAYEDQHDDLAG 227 Query: 240 QGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYP 299 TS+LSP+L G LS + +R + K +GA +++ +L WR+F+ ++A P Sbjct: 228 DATSRLSPHLHFGTLSAAELVHRARR-------KEGAGATAFVRQLCWRDFHHQVLAARP 280 Query: 300 SVCMGKPFIPWTEKIEWNKDSHL-LQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITA 358 + + +D+ +AW++G TG+PI+DAAMRQL GWMHNR R++ A Sbjct: 281 DASHAD-YRAREDHWRTGRDAEQETEAWREGRTGYPIVDAAMRQLAHEGWMHNRGRLLAA 339 Query: 359 SFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRF 418 SFL K L VDWR G ++F+S L+DGD+A+N WQW A TG D+ P+ R+ NP Q R+ Sbjct: 340 SFLSKTLYVDWRTGADHFLSLLVDGDIANNQMNWQWVAGTGTDTRPH-RVLNPVRQAHRY 398 Query: 419 DPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIV 461 DP G ++R W+PEL V + +H P + + ++YP P+V Sbjct: 399 DPDGAYVRRWVPELAGVEGKAVHEPWTLEGFDRAGIDYPEPVV 441 >gi|86136341|ref|ZP_01054920.1| DNA photolyase, Cryptochrome 1 apoprotein (Blue lightphotoreceptor) [Roseobacter sp. MED193] gi|85827215|gb|EAQ47411.1| DNA photolyase, Cryptochrome 1 apoprotein (Blue lightphotoreceptor) [Roseobacter sp. MED193] Length = 470 Score = 206 bits (524), Expect = 7e-51, Method: Compositional matrix adjust. Identities = 157/496 (31%), Positives = 233/496 (46%), Gaps = 64/496 (12%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFI--------ATPEQWRQHGISARQSHFIY 62 ++W R D R+ D++AL+AA NS+ VI V + +WR +S HF Sbjct: 8 IIWFRKDFRLADHQALFAAS-NSERPVIPVVVLDELTQTYGAAPKWR---LSKAIEHFA- 62 Query: 63 ASLLQVQKSLS-QKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDK 121 L QV L ++G Q L + + +++ R Y+ + + RD Sbjct: 63 DRLNQVGSRLILRRGPAAQE------------LLALAQETGAGDIWWTRAYDPDAIARDT 110 Query: 122 LLEKRLQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVP 180 ++ L KS+ +L P ++ +KVY+P +A+ V A P P Sbjct: 111 KVKSTLTDAGFKAKSWPGQLLFEPWAVKTKQGGFFKVYSPMWRAVKDLDVAA-----PSP 165 Query: 181 AIR---------LTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYV 231 A + ++ P+ + + + + +GE A L +F + Y Sbjct: 166 APKFLMAPETWPVSDPLQGWQLDKGMQRGARILSAHACVGEVAANTRLAQFLDVAIDGYK 225 Query: 232 EQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFY 291 E+RD PA+ TS LS L+ G + P W+ + ++ + GA +L EL+WREF Sbjct: 226 ERRDYPALNATSGLSENLAWGEIGPATVWH----AGLRAHLEGQRGAEHFLKELVWREFA 281 Query: 292 RHLMAFYPSVCMGK-----PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTI 346 HL P + PW+E ++D +L+ WKQG TG P++DAAMR+L Sbjct: 282 YHLAFHTPKITQENWKSQWNDFPWSE----HEDEAVLR-WKQGRTGVPLVDAAMRELYVT 336 Query: 347 GWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYF 406 G MHNR RMI ASFL K +L WRIG+++F L+D D A+N GWQW A G D+ PYF Sbjct: 337 GHMHNRSRMIVASFLTKHMLKHWRIGQKWFEDCLIDWDPAANAMGWQWVAGCGPDAAPYF 396 Query: 407 RIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHA-----PHSW-LDKNDLSLNYPLPI 460 RIFNP Q K+FD + +I+ +L E P A P +W L K+D YP PI Sbjct: 397 RIFNPETQAKKFDAEQQYIQRFLAERAPTPGPEALAFFDACPRAWALSKDD---PYPTPI 453 Query: 461 VDHKKACHHTLNQYYA 476 V + H L Y A Sbjct: 454 VGLAEGRHRALTAYAA 469 >gi|308178900|ref|YP_003918306.1| deoxyribodipyrimidine photo-lyase [Arthrobacter arilaitensis Re117] gi|307746363|emb|CBT77335.1| deoxyribodipyrimidine photo-lyase [Arthrobacter arilaitensis Re117] Length = 464 Score = 206 bits (524), Expect = 8e-51, Method: Compositional matrix adjust. Identities = 138/443 (31%), Positives = 213/443 (48%), Gaps = 29/443 (6%) Query: 5 TAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYAS 64 + + + L+W R+DLR DN AL +A + VIAVFI + + +++ Sbjct: 4 SPLPLQLMWFRDDLRTADNPALSSAL--AAGPVIAVFILDQQSPGIRPLGGAAKWWLHHG 61 Query: 65 LLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLE 124 L ++ +L GI + DSI + Q + +NR+Y E D + Sbjct: 62 LKSLRAALEDLGIPLVLRKGPA--DSI--MTELARQTNAQAVHWNRRYGQPERAVDTRAK 117 Query: 125 KRLQH-RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIR 183 L+ +S+ ++L P +L YKV+TPF AL + ++ P+PA Sbjct: 118 TALRGLGREARSYPGTLLHEPWELLTKKGTGYKVFTPFYNALGDSAIRP-----PLPAPL 172 Query: 184 LTGPVTPSNIPRFFDYPFQAIDPM-----------FPIGEQNALHILRKFCKEKVYYYVE 232 + + IP + + P + GE A H L + Y E Sbjct: 173 GQDTFSAAGIPNGLELEDLELLPATAQWTAGLAAQWEPGEAPARHRLENVLESIAQDYPE 232 Query: 233 QRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYR 292 D P + GTS LSP L G L + W+ L + K +GA + +L WR+F Sbjct: 233 HHDRPDLDGTSALSPALRWGHLGAHEMWDALGRLAAEN-PKAGAGATAMRRQLAWRDFCW 291 Query: 293 HLMAFYPSV---CMGKPF--IPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIG 347 HL +P + + F W + + + +Q W++G TGF ++DA M+QL G Sbjct: 292 HLYYHHPQLPDRNLRTDFDHFDWVWPEQDQQVASYVQLWQKGRTGFGLVDAGMQQLWQTG 351 Query: 348 WMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFR 407 WMHNR+RM+ AS LVK+L V W++GE +F L+D D+ASN WQW A +G D+ PYFR Sbjct: 352 WMHNRVRMVAASLLVKNLQVHWKVGERWFWDTLVDADIASNTANWQWVAGSGADAAPYFR 411 Query: 408 IFNPTIQGKRFDPQGTFIRHWLP 430 +FNP +Q K+FDPQG+++ + P Sbjct: 412 VFNPELQAKKFDPQGSYVSQFAP 434 >gi|87199776|ref|YP_497033.1| deoxyribodipyrimidine photo-lyase type I [Novosphingobium aromaticivorans DSM 12444] gi|87135457|gb|ABD26199.1| deoxyribodipyrimidine photo-lyase type I [Novosphingobium aromaticivorans DSM 12444] Length = 454 Score = 206 bits (524), Expect = 8e-51, Method: Compositional matrix adjust. Identities = 151/477 (31%), Positives = 233/477 (48%), Gaps = 38/477 (7%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 +VW R DLR+ ++ VI V+I + R + +++ SL ++ Sbjct: 6 IVWFRRDLRLA--DQAALLAAAAEGPVIPVYILDDDTPRHCRMGGASRWWLHHSLAELDA 63 Query: 71 SLSQKG--IVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128 SL + G ++ + +C E L + + + + YE +K + K + Sbjct: 64 SLRKLGSRLILRRGKCH------EELAAVRREAGARVVHALQHYEPWWRNAEKAVAKTI- 116 Query: 129 HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADL----RSLPVPAIRL 184 R++ + + L P GS+ + YK+YTPF AL++ + A L PA+ Sbjct: 117 -RLVL--HEGNYLAPAGSVRTGMGRPYKIYTPFWHALLERMPPAPPLPAPERLEAPAVWP 173 Query: 185 TGPVTPS--NIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGT 242 T +P D+ + P GE A L+ F ++V Y E R++P+I+GT Sbjct: 174 TSDALDDWKLLPTAPDWAGGFRETWTP-GENGAEERLQDFA-DRVARYGETRNLPSIEGT 231 Query: 243 SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVC 302 S+LSP+L G +SP W+R+ + +L EL WR++ ++++ +P Sbjct: 232 SRLSPHLHFGEISPATIWHRV--------VNAGGSVDVFLGELGWRDYAQNVIVQFPDYG 283 Query: 303 MGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLV 362 + +++EW D L+AW+QG TG+PI+DA MR+L GWMHNR+RMI ASFLV Sbjct: 284 SRNAREAY-DRLEWRDDPEALRAWQQGRTGYPIVDAGMRELWHTGWMHNRVRMIAASFLV 342 Query: 363 KDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQG 422 K LL+DWR GE +F L+D D ASN WQW A TG DS + RI P Q +FD G Sbjct: 343 KHLLIDWREGERWFWDTLVDADYASNAVNWQWTAGTGVDSNMFVRIMAPLTQSPKFDAAG 402 Query: 423 TFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479 +IR W+PEL ++ + IH P YP IV H +A L + K+ Sbjct: 403 -YIRQWVPELAHLSDRDIHDPAV------PPRGYPAKIVSHSEARARALAAHDRMKQ 452 >gi|282862663|ref|ZP_06271724.1| Deoxyribodipyrimidine photo-lyase [Streptomyces sp. ACTE] gi|282562349|gb|EFB67890.1| Deoxyribodipyrimidine photo-lyase [Streptomyces sp. ACTE] Length = 459 Score = 206 bits (523), Expect = 8e-51, Method: Compositional matrix adjust. Identities = 138/470 (29%), Positives = 231/470 (49%), Gaps = 40/470 (8%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 MSV +V +DLR+ D+ L+AA ++D +V+ +F+ R + + F+ L Sbjct: 1 MSVAVVLFTSDLRLHDHPPLHAALASAD-EVVPLFVRDDAVARAGFCAPNREAFLADCLR 59 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 + L +G D+ + + ++ + RR++ L + Sbjct: 60 DLDAGLRDRGGRLVIRSGEIVDE----VRRVVTETGAGEVHLAADVSGHAQRREERLREA 115 Query: 127 LQ--------HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRS-L 177 L H + + ++P GS +H + V+TP+ ++ Q LR+ Sbjct: 116 LASAGCRLRVHDAVVTAVAPGAVVPSGSGKDH----FAVFTPY----FRSWSQVGLRTPF 167 Query: 178 PVP-AIRLTGPVTPSNIPRFFDYPFQAID-PMFPIGEQNALHILRKFCKEKVYYYVEQRD 235 P A+R+ P P++ P + + GE+ + + ++ + Y ++ D Sbjct: 168 GAPRAVRM--PDGPASEPVPERSRVSGVSRGVAEGGEREGRRRMTAWRRQGLGRYEDRHD 225 Query: 236 IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLM 295 A TS+LSP+L G LSP + +R + +GA +++ +L WR+F+ ++ Sbjct: 226 DLAGDATSRLSPHLHFGTLSPTELIHRARS-------AGGAGAEAFVRQLCWRDFHHQVL 278 Query: 296 AFYPSVCMGKPFIPWTEKIEWNKD---SHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNR 352 A P+ T W + + ++AWK+G TG+P++DAAMRQL GWMHNR Sbjct: 279 AARPAASHADYR---TRDDRWRTERTAAGDIEAWKEGRTGYPLVDAAMRQLRHEGWMHNR 335 Query: 353 LRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPT 412 R++TASFLVK L VDWRIG +F+ L+DGD+A+N WQW A TG DS P R+ NP Sbjct: 336 GRLLTASFLVKTLYVDWRIGARHFLELLVDGDIANNQLNWQWMAGTGTDSRPN-RVLNPV 394 Query: 413 IQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVD 462 +Q KR+D G ++R W+PEL + +H P + +L+YP P++D Sbjct: 395 VQAKRYDTDGAYVRRWVPELEKLGAPAVHEPWRLTGRERAALDYPEPLLD 444 >gi|295840351|ref|ZP_06827284.1| deoxyribodipyrimidine photolyase [Streptomyces sp. SPB74] gi|295827937|gb|EFG65724.1| deoxyribodipyrimidine photolyase [Streptomyces sp. SPB74] Length = 455 Score = 206 bits (523), Expect = 1e-50, Method: Compositional matrix adjust. Identities = 136/465 (29%), Positives = 222/465 (47%), Gaps = 34/465 (7%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M +V +DLR+ D+ L AA ++ +V+ +F+ P + + ++ F+ L Sbjct: 1 MKASIVLYTSDLRLHDHPPLRAATREAE-EVVPLFVRDPGIEKAGFTAPNRAAFLADCLA 59 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 + L ++G E + S ++ + R LE Sbjct: 60 GLDAGLRERGGRLVVRAGDPVRIVRELVGSTGAERVHVAAGLSAYARGRADRLRTALEGT 119 Query: 127 ----LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPF-RKALIQNLVQ--ADLRSLPV 179 ++H + + L PG ++ + V+TP+ R+ Q L + A R+L V Sbjct: 120 GAELVEHEAVVTA------LQPGELVPGGKDHFAVFTPYHRQWSAQPLREPLAAPRALTV 173 Query: 180 PAIRLTGPVTPSNIPRFFDYPFQAIDP-MFPIGEQNALHILRKFCKEKVYYYVEQRDIPA 238 P+ V +PR D + + P + GE +L + ++ V Y E D A Sbjct: 174 PS-----GVRSDAVPRRAD--VEGVSPGLAEGGEAAGRALLAAWRRDGVSRYEEMHDDLA 226 Query: 239 IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFY 298 GTS+LSPYL G LS +C +R++ +++ +L WR+F+ ++A Sbjct: 227 GDGTSRLSPYLHFGALSAAECVHRVRAAGGAGAD-------AFVRQLCWRDFHHQVLAAR 279 Query: 299 PSVCMGKPFIPWTEKIEWNKDSHL-LQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMIT 357 P+ K + P + + + AW++G TG+P++DAAMRQL GWMHNR R++ Sbjct: 280 PAAAH-KDYRPRGDHWRTGRSAEREAAAWREGRTGYPVVDAAMRQLAHEGWMHNRGRLLA 338 Query: 358 ASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKR 417 ASFL K L +DWR+G +F+ L DGDLA+N WQW A TG D+ P R+ NP Q ++ Sbjct: 339 ASFLTKTLYLDWRLGAAHFLDLLADGDLANNQMNWQWVAGTGTDTRP-GRVLNPLTQARK 397 Query: 418 FDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVD 462 +DP+G ++R W+PEL + + +H P W YP P+VD Sbjct: 398 YDPEGDYVRRWVPELRGIEGRAVHEP--WKRPAGEREGYPRPLVD 440 >gi|154250062|ref|YP_001410887.1| deoxyribodipyrimidine photo-lyase [Fervidobacterium nodosum Rt17-B1] gi|154153998|gb|ABS61230.1| Deoxyribodipyrimidine photo-lyase [Fervidobacterium nodosum Rt17-B1] Length = 436 Score = 205 bits (522), Expect = 1e-50, Method: Compositional matrix adjust. Identities = 154/493 (31%), Positives = 240/493 (48%), Gaps = 88/493 (17%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 +S++L + DLR+ DNKAL+ A NS +K+I +F+ ++ ++ F+ + Sbjct: 2 LSMYL--FKRDLRLDDNKALFEALKNS-SKIIPIFVFNKTILKEFNAYNQKVGFV----V 54 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 V K++S+K ++ +H D+ +E+L S + + L+ + + RD+ +EK Sbjct: 55 DVLKNISKKINLYVFHGED--DEILEFLFS---KYKPDALYTAQSFSWQGEERDRNIEK- 108 Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMY------KVYTPFRK----------------A 164 +C+ + + ++ ++ L + KV+TPF K Sbjct: 109 -----VCRKCN----VKFHAVFDNYLADFRKIPYTKVFTPFYKKWLGYVESQEYEINIEE 159 Query: 165 LIQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCK 224 L + +V DL ++ ++ + N +DY F+ LR + Sbjct: 160 LKRKVVALDLDTIDTILVKFP-ELNQKNEVFTYDYGFER---------------LRSYDF 203 Query: 225 EKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWN---RLKEEFVDLLIKPKSGAFSW 281 K Y EQRD P + +S+LSPY+ GVLS R+ N ++ EFV Sbjct: 204 AK---YQEQRDFPGLDMSSRLSPYIRFGVLSIRKIHNIASKVSPEFV------------- 247 Query: 282 LNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMR 341 +L WREF+ H+ + S F+ + W D L + + TG+PI+DA +R Sbjct: 248 -RQLAWREFWYHIKYNF-SEFNKLEFLEKRRNVRWRYDEKLFEKFVNAQTGYPIVDAGIR 305 Query: 342 QLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGND 401 QL WMHNR+R+I A+FLVKDLL+DWRIGE++F LLD D N G WQW+AS G D Sbjct: 306 QLKQENWMHNRVRLIVANFLVKDLLIDWRIGEKFFREYLLDYDEVLNVGNWQWSASVGPD 365 Query: 402 SVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIV 461 P RIFNP IQ ++FDP +I+ ++PEL N IH P + LNY PIV Sbjct: 366 PKP-LRIFNPMIQSEKFDPNCEYIKKYIPELKNEENYKIHNPLEY------KLNYYEPIV 418 Query: 462 DHKKACHHTLNQY 474 +H +A T Y Sbjct: 419 NHYEAVQITKRLY 431 >gi|256789597|ref|ZP_05528028.1| deoxyribodipyrimidine photolyase [Streptomyces lividans TK24] gi|289773486|ref|ZP_06532864.1| deoxyribodipyrimidine photolyase [Streptomyces lividans TK24] gi|289703685|gb|EFD71114.1| deoxyribodipyrimidine photolyase [Streptomyces lividans TK24] Length = 458 Score = 205 bits (521), Expect = 1e-50, Method: Compositional matrix adjust. Identities = 133/444 (29%), Positives = 210/444 (47%), Gaps = 28/444 (6%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M+ +V DLR+ D+ L AA SDA V+ +F+ + + + L Sbjct: 1 MATSVVLFTRDLRLHDHPPLRAALDRSDA-VVPLFVRDRAVGAAGFAAPNRLALLADCLR 59 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 + L +G D +E + + + ++ + RR++LL Sbjct: 60 DLDSGLRDRGGRLVVRSG----DLVEEVCAVAGEAEADEVHLAADVSAHAHRREELLRSA 115 Query: 127 LQHRVICKSFDDSV--LLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPA-IR 183 L R D+V +L PGS+ + + V+TP+ + + V+ L P +R Sbjct: 116 LSARGCRLHVHDAVTTVLAPGSVTPASSDHFAVFTPYFRRWSERAVR---EPLAAPRRVR 172 Query: 184 LTGPVTPSNIPRFFDYPFQAIDPMFPIG-EQNALHILRKFCKEKVYYYVEQRDIPAIQGT 242 + V +P D + P P G E++A L + + + Y + D A T Sbjct: 173 VPDGVGSEPLPARGD--LTGLSPGLPTGGERDARKRLTAWLRGGIAGYADHHDDLAGDAT 230 Query: 243 SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVC 302 S+LSP L +G LSP + +R + GA +++ +L WR+F+ ++A P Sbjct: 231 SRLSPDLHLGALSPVELVHRARRAG-------GPGAEAFVRQLAWRDFHHQVLAARPHAS 283 Query: 303 MGKPFIPWTEKIEWNKDSHLLQA---WKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITAS 359 T W + W+ G TG+P++DAAMRQL GWMHNR R++ AS Sbjct: 284 AADYR---TRHDRWRTGAAAEADAAAWRDGRTGYPVVDAAMRQLRHEGWMHNRGRLLVAS 340 Query: 360 FLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFD 419 FL K L VDWR+G +F+ L+DGD+A+N WQW A TG D+ P+ R+ NPT Q +RFD Sbjct: 341 FLTKTLYVDWRVGARHFLELLVDGDVANNQLNWQWVAGTGTDTRPH-RVLNPTTQARRFD 399 Query: 420 PQGTFIRHWLPELNNVPTQYIHAP 443 P G ++R W+PEL + + +H P Sbjct: 400 PGGAYVRRWVPELAGLAGRSVHEP 423 >gi|254821492|ref|ZP_05226493.1| Phr protein [Mycobacterium intracellulare ATCC 13950] Length = 442 Score = 205 bits (521), Expect = 2e-50, Method: Compositional matrix adjust. Identities = 150/480 (31%), Positives = 221/480 (46%), Gaps = 60/480 (12%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 L+W R DLR+ D+ AL AA +V+A F+ P G R+ F+ SL +++ Sbjct: 4 LLWFRRDLRLRDHPALLAAAEAH--EVLACFVLDPRLESSSG--QRRLQFLGDSLRRLRA 59 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130 L + +V + + + + T + + + RRD+ + L Sbjct: 60 DLDGRLLVTRGRPDTQ-------IPHIAKEIGATSVHISEDFAPFGTRRDERVRAALGA- 111 Query: 131 VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTP 190 V + L+ PG + Y+V+TPF L Q PA Sbjct: 112 VPLVATGSPYLVSPGRVTKPDGSPYQVFTPF-------LRQWHKVGWRAPATSGAASAHW 164 Query: 191 SNIPRFFDYPFQAIDPMFPIGEQNALHIL----RKFCKEKVYYYVEQRDIPAIQGTSQLS 246 + R + DP P+ + F + Y + R+ P ++GTS++S Sbjct: 165 LDPARLRVGHCEIPDPGVPLDVAAGEAAARAQWKSFLDNGLRSYADDRNRPDLRGTSRMS 224 Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP 306 +L G + PR DL ++ GA ++L EL +R+FY ++ +P+ Sbjct: 225 AHLKFGTVHPRTL-------AADLDLR-GGGAQAYLRELAFRDFYADVLHHWPASA---- 272 Query: 307 FIPWTEKIEWNKD------------SHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLR 354 W WNKD AWK G TGFP +DA MRQL G+MHNR+R Sbjct: 273 ---WRN---WNKDFDGIPTDSGAEAERRFAAWKAGETGFPFVDAGMRQLRETGFMHNRVR 326 Query: 355 MITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQ 414 M ASFLVKDL + W+ G E+F+ QL+DGD+A+N GWQW A G D+ PYFR+F+PT Q Sbjct: 327 MSVASFLVKDLHLPWQWGAEWFLDQLVDGDMANNQHGWQWCAGCGTDAAPYFRVFDPTTQ 386 Query: 415 GKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQY 474 G++FDP G +IR W+PEL + +H L + NYP PIVDH L +Y Sbjct: 387 GEKFDPTGDYIRRWVPELRSA--DDVH-----LRRGRRPDNYPQPIVDHAAERAEALRRY 439 >gi|315605497|ref|ZP_07880534.1| deoxyribodipyrimidine photolyase [Actinomyces sp. oral taxon 180 str. F0310] gi|315312764|gb|EFU60844.1| deoxyribodipyrimidine photolyase [Actinomyces sp. oral taxon 180 str. F0310] Length = 475 Score = 205 bits (521), Expect = 2e-50, Method: Compositional matrix adjust. Identities = 136/443 (30%), Positives = 215/443 (48%), Gaps = 32/443 (7%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFI----ATPEQWRQHG---ISARQSHFIYA 63 L+WLR+DLR+ D+ AL AAC + V+A++I T E +HG + A + + Sbjct: 4 LIWLRDDLRLADHPALTAACTGAHGPVVALWIHETRRTDEDNNRHGPRPLGAATRWWYHR 63 Query: 64 SLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLL 123 SL Q+ L+ GI + + D+ + + T + + R+Y R D + Sbjct: 64 SLQQLAPRLADLGIPLIFARG----DAARIMRRVVDTLQPTFVHWTRRYAPAACRLDAAI 119 Query: 124 EKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQN-----------LVQA 172 ++ L+ R S S+L P + + Y+V+TPF A+ + + Sbjct: 120 KQELKSRTEVHSHPGSLLAEPWLMRTASGSHYQVFTPFSHAVADLPLTPLLPEPSPVDEP 179 Query: 173 DLRSLPVPAIRLTGPV-TPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYY-- 229 D + + +R G + +I D P D + E L ++ + Sbjct: 180 DGAATDLATLREDGVLHNLEDIGLLDDGPDWWEDTLAQHWEPGELAARQQLDAIDGWLPG 239 Query: 230 YVEQRDIPAIQ-GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWR 288 Y ++RD+P + TS++SP L G LSPRQ + +W +L WR Sbjct: 240 YAKRRDLPGEETSTSRISPRLRCGELSPRQALAAARSS-----TAAGEDIAAWTRQLYWR 294 Query: 289 EFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGW 348 EF HL+ + P P E+ ++ D HL++AW+QG TG ++D M QL GW Sbjct: 295 EFCWHLL-HHREHLEDTPMRPAFEEFPYHPDDHLVRAWRQGRTGIDLVDGGMWQLWQTGW 353 Query: 349 MHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRI 408 MHNR+RM+ AS K++L W+ GE++F L+D D A+N WQW A +G D+ PYFRI Sbjct: 354 MHNRVRMVAASLFTKNMLQPWQDGEQWFWETLVDADEANNPISWQWVAGSGADAAPYFRI 413 Query: 409 FNPTIQGKRFDPQGTFIRHWLPE 431 FNP +Q RFDP ++++ W+PE Sbjct: 414 FNPELQRTRFDPHSSYVKRWIPE 436 >gi|145294801|ref|YP_001137622.1| hypothetical protein cgR_0748 [Corynebacterium glutamicum R] gi|140844721|dbj|BAF53720.1| hypothetical protein [Corynebacterium glutamicum R] Length = 482 Score = 204 bits (520), Expect = 2e-50, Method: Compositional matrix adjust. Identities = 165/503 (32%), Positives = 236/503 (46%), Gaps = 79/503 (15%) Query: 11 LVWLRNDLRITDNKAL-YAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69 L+W R+DLR++DN AL +AA H VI +FI ++ I A + SL + Sbjct: 24 LLWFRDDLRLSDNAALKWAADH---GPVIGLFI---DETINRSIGAAARWWREQSLNALA 77 Query: 70 KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH 129 + LS G+ + +E L + V + +NR+Y D L+K L+ Sbjct: 78 QDLSFYGVPL----LRRTGNPLEILPKIVSEMEVKAVTWNRRYHQPLCEVDATLKKNLRD 133 Query: 130 RVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQ----NLVQADLRSLPVPAIRL 184 + I S +L P + YKV+TPF KA + + + ++ VP+ L Sbjct: 134 QGIEVHSHPGFLLTEPWEVSTATGTPYKVFTPFSKAAWEVARGHAYETVKNNVTVPS-HL 192 Query: 185 TGPVTPS-NIPRFFDYPFQA---IDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ 240 TGP IP + PF A + P GE+NA L F E + Y + RD A Sbjct: 193 TGPEGVELPIPEM-EQPFWATTLVKECAP-GEKNASEKLFDFL-EHLQDYPQARDSLARS 249 Query: 241 GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPS 300 TS+LS +L G +S + W + G +L EL+WR+F H + P Sbjct: 250 ATSKLSAHLRFGEISIHRVW-------AETAAIDSEGTELFLKELLWRDFAWHRLYALPH 302 Query: 301 V-------------------------CMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPI 335 + P IP T+ ++++D L AW+ G TG P+ Sbjct: 303 MDTQNVRMQFNRFGWSWDPSEKDKLNTPSTPLIP-TKADQFHED---LAAWRAGKTGIPL 358 Query: 336 IDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWA 395 +DA MR+L G MHNR+RM+ ASFL K+L + WR GEE+F L+D D ASN WQWA Sbjct: 359 VDAGMRELWATGSMHNRVRMVVASFLTKNLQIHWRHGEEWFWETLVDADPASNAFNWQWA 418 Query: 396 ASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLN 455 A +G+D+ PYFRIFNP Q K+FDP T+IR W+PE + + Sbjct: 419 AGSGDDASPYFRIFNPVTQAKKFDPDETYIRRWVPEYG-------------------TPS 459 Query: 456 YPLPIVDHKKACHHTLNQYYAAK 478 YP PIVD K++ L+ Y A K Sbjct: 460 YPDPIVDLKESRQIALDAYSAIK 482 >gi|14517649|gb|AAK64295.1|AF159509_2 DNA-photolyase [[Brevibacterium] flavum] Length = 482 Score = 204 bits (520), Expect = 2e-50, Method: Compositional matrix adjust. Identities = 165/503 (32%), Positives = 236/503 (46%), Gaps = 79/503 (15%) Query: 11 LVWLRNDLRITDNKAL-YAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69 L+W R+DLR++DN AL +AA H VI +FI ++ I A + SL + Sbjct: 24 LLWFRDDLRLSDNAALKWAADH---GPVIGLFI---DETINRSIGAAARWWREQSLNALA 77 Query: 70 KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH 129 + LS G+ + +E L + V + +NR+Y D L+K L+ Sbjct: 78 QDLSFYGVPL----LRRTGNPLEILPKIVSEMEVKAVTWNRRYHQPLCEVDATLKKNLRD 133 Query: 130 RVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQ----NLVQADLRSLPVPAIRL 184 + I S +L P + YKV+TPF KA + + + ++ VP+ L Sbjct: 134 QGIEVHSHPGFLLTEPWEVSTATGTPYKVFTPFSKAAWEVARGHAYETVKNNVTVPS-HL 192 Query: 185 TGPVTPS-NIPRFFDYPFQA---IDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ 240 TGP IP + PF A + P GE+NA L F E + Y + RD A Sbjct: 193 TGPEGVELPIPEM-EQPFWATTLVKECAP-GEKNASEKLFDFL-EHLQDYPQARDSLARS 249 Query: 241 GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPS 300 TS+LS +L G +S + W + G +L EL+WR+F H + P Sbjct: 250 ATSKLSAHLRFGEISIHRVW-------AETAAIDSEGTELFLKELLWRDFAWHRLYALPH 302 Query: 301 V-------------------------CMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPI 335 + P IP T+ ++++D L AW+ G TG P+ Sbjct: 303 MDTQNVRMQFNRFGWSWDPSEKDKLNTPSTPLIP-TKADQFHED---LAAWRAGKTGIPL 358 Query: 336 IDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWA 395 +DA MR+L G MHNR+RM+ ASFL K+L + WR GEE+F L+D D ASN WQWA Sbjct: 359 VDAGMRELWATGSMHNRVRMVVASFLTKNLQIHWRHGEEWFWETLVDADPASNAFNWQWA 418 Query: 396 ASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLN 455 A +G+D+ PYFRIFNP Q K+FDP T+IR W+PE + + Sbjct: 419 AGSGDDASPYFRIFNPVTQAKKFDPDETYIRRWVPEYG-------------------TPS 459 Query: 456 YPLPIVDHKKACHHTLNQYYAAK 478 YP PIVD K++ L+ Y A K Sbjct: 460 YPDPIVDLKESRQIALDAYSAIK 482 >gi|330684348|gb|EGG96079.1| putative deoxyribodipyrimidine photo-lyase [Staphylococcus epidermidis VCU121] Length = 456 Score = 204 bits (520), Expect = 2e-50, Method: Compositional matrix adjust. Identities = 121/328 (36%), Positives = 170/328 (51%), Gaps = 18/328 (5%) Query: 142 LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPF 201 P N+ + YKV+T F K +++ + I G + P Sbjct: 129 FSPRKTFNNQGEPYKVFTSFYKKWRPYVIERHRAHYELSDISKIGEPAYA--------PT 180 Query: 202 QAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWN 261 Q D + E+ + F + Y R+ TSQLS L+ G++ Q +N Sbjct: 181 QINDSHSGLTEKEVQQQWQSFLNNDIQNYESNREYLPEVLTSQLSIALAYGLIDILQVFN 240 Query: 262 RLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSH 321 L + +S +++ ELI+REFY LM YP + F IEW D Sbjct: 241 DLLHGYE----SNESNYEAFIRELIFREFYYVLMTQYPETAH-QSFKEKYRNIEWVNDKQ 295 Query: 322 LLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLL 381 WK G TG+PI+DAAM++LN G+MHNR+RM+T+ FL KDLL+DW GE YF +L+ Sbjct: 296 QFDQWKNGKTGYPIVDAAMQELNQTGYMHNRMRMVTSQFLTKDLLIDWTWGETYFKDKLI 355 Query: 382 DGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIH 441 D D ASN GWQW+ASTG D+VPYFR+FNP Q +RFDP +I+ WL LN+V + +H Sbjct: 356 DYDNASNVHGWQWSASTGTDAVPYFRMFNPIKQSERFDPNALYIKQWLSTLNHVDSHLLH 415 Query: 442 --APHSWLDKN---DLSLNYPLPIVDHK 464 H L K L ++YP P+V+H+ Sbjct: 416 DTQKHMQLLKQQGIQLGVDYPEPMVNHQ 443 >gi|29467479|dbj|BAC67178.1| cryptochrome 2 [Armoracia rusticana] Length = 617 Score = 204 bits (520), Expect = 2e-50, Method: Compositional matrix adjust. Identities = 159/492 (32%), Positives = 237/492 (48%), Gaps = 58/492 (11%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 +VW R DLRI DN AL AA H V VFI PE+ Q ++ SL + + Sbjct: 8 IVWFRRDLRIEDNPALAAAAHQ--GSVFPVFIWCPEEEGQFYPGRASRWWMKQSLAHLSQ 65 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQ-QRVTKLFYNRQYE-INEVRRDKLLEKRLQ 128 SL G + N +I LD C++ TK+ +N Y+ ++ VR + EK ++ Sbjct: 66 SLKALGSELTLIKTHNTVSAI--LD--CIRVTGATKVVFNHLYDPVSLVRDHTVKEKLVE 121 Query: 129 HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188 + +SF+ +L P I + + ++ + K + +++ + P I +T V Sbjct: 122 LGISVQSFNGDLLYEPWEIYCEKGKPFTSFSSYWKKCLDMSIESVMLPPPWRLIPITAAV 181 Query: 189 TPS--------NIPRFFDYPFQAI-DPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAI 239 + + P A+ + G NA IL +F +++ YY + + Sbjct: 182 EAVWACSIEELGLENDAEKPSNALLTRAWSPGWSNADKILNEFIDKQLIYYAKNSNKVVG 241 Query: 240 QGTSQLSPYLSIGVLSPR---QC-------WNRLK----EEFVDLLIKPKSGAFSWLNEL 285 TS LSPYL G +S R QC W R K EE DL +K + Sbjct: 242 NATSLLSPYLHYGEISVRRVFQCARMKQIIWARDKNSEGEESTDLFLKG----------I 291 Query: 286 IWREFYRHLMAFYP-----SVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAM 340 RE+ R++ +P S+ F PW + D +AW+QG TG+P++DA M Sbjct: 292 GLREYSRYICFNFPFTHEQSLLSHLRFFPW------DADVDKFKAWRQGRTGYPLVDAGM 345 Query: 341 RQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGN 400 R+L GWMHNR+R+I +SF VK LL+ W+ G +YF LLD DL + GWQ+ + + Sbjct: 346 RELWATGWMHNRIRVIVSSFAVKFLLLPWKWGMKYFWDTLLDADLECDILGWQYISGSLP 405 Query: 401 DSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIH----APHSWLDKN--DLSL 454 D R+ NP IQG +FDP+G +IR WLPEL +PT++IH AP + L + +L Sbjct: 406 DGHELDRLDNPAIQGAKFDPEGEYIRQWLPELARLPTEWIHHPWDAPLTVLKASGVELGT 465 Query: 455 NYPLPIVDHKKA 466 NY PIVD A Sbjct: 466 NYVKPIVDIDTA 477 >gi|117164673|emb|CAJ88219.1| putative deoxyribodipyrimidine photolyase [Streptomyces ambofaciens ATCC 23877] Length = 457 Score = 204 bits (518), Expect = 3e-50, Method: Compositional matrix adjust. Identities = 137/467 (29%), Positives = 227/467 (48%), Gaps = 36/467 (7%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 MSV +V DLR+ D+ L AA +D +V+ +F+ P + + F+ L Sbjct: 1 MSVAVVLFTADLRLHDHPPLRAALRAAD-EVVPLFVLDPGIHAAGFDAPNRRAFLADCLH 59 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYC------LQQRVTKLFYNRQYEINEVRRD 120 + SL ++ + + + + C L VT ++R+ + E Sbjct: 60 DLDASLRRRAGRLVV-RSGPVVRVVREVVAECGAGEVHLAAGVTAYAHHREERLREGLGG 118 Query: 121 KLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTP-FRKALIQNLVQ--ADLRSL 177 + V + ++ PG++ + V+TP FR+ ++L + R++ Sbjct: 119 SGVALHAHETV-------TTVVAPGAVTPAGSDHFAVFTPYFRRWARESLREPFGAPRTV 171 Query: 178 PVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHI-LRKFCKEKVYYYVEQRDI 236 VP GP +P + P P P G + A + + + Y ++ D Sbjct: 172 RVPDGVRGGP-----LPDRAEVP--GTSPGLPDGGETAGRDRFSLWSRAGMSAYEDRHDD 224 Query: 237 PAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMA 296 A TS+LSPYL G LS + +R + + GA +++ +L WR+F+ ++A Sbjct: 225 LAGDATSRLSPYLHFGALSAVELVHRARR-------RGGPGAEAFVRQLCWRDFHHQVLA 277 Query: 297 FYPSVCMGKPFIPWTEKIEWNKDSHL-LQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRM 355 P + + + KD+ + AW++G TG+P++DAAMRQL GWMHNR R+ Sbjct: 278 ARPKASA-EDYRTRHDHWRGEKDAAADISAWREGRTGYPVVDAAMRQLRHEGWMHNRARL 336 Query: 356 ITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQG 415 + ASFL K L VDWRIG +F+ L+DGD+ +N WQW A TG D+ P+ R+ NP +QG Sbjct: 337 LVASFLTKTLYVDWRIGARHFLDLLVDGDIVNNQLNWQWVAGTGTDTRPH-RVLNPVVQG 395 Query: 416 KRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVD 462 +RFDP G ++ W+PEL +V + +H P + +L+YP P++D Sbjct: 396 RRFDPDGAYVHRWVPELRDVDGKRVHEPWRLPEDQRAALDYPAPLID 442 >gi|294811681|ref|ZP_06770324.1| deoxyribodipyrimidine photo-lyase [Streptomyces clavuligerus ATCC 27064] gi|326440135|ref|ZP_08214869.1| deoxyribodipyrimidine photo-lyase [Streptomyces clavuligerus ATCC 27064] gi|294324280|gb|EFG05923.1| deoxyribodipyrimidine photo-lyase [Streptomyces clavuligerus ATCC 27064] Length = 453 Score = 204 bits (518), Expect = 3e-50, Method: Compositional matrix adjust. Identities = 137/461 (29%), Positives = 216/461 (46%), Gaps = 28/461 (6%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M+V ++ +DLR+ D AL AA +D +V+ +F+ R + + F+ SL Sbjct: 1 MTVSVILFTSDLRVHDQPALAAAVREAD-EVVPLFVLDRGVRRSGFDAPNRLAFLADSLT 59 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 + + L ++G D E + + + RR+ L Sbjct: 60 ALDEELRERGGRLVLRTG----DVAEQVGRVVTETGARTVHLAAGVSAYARRREDRLRAG 115 Query: 127 LQHRVICKSFDDSVL--LPPGSILNHALQMYKVYTP-FRK--ALIQNLVQADLRSLPVPA 181 L + V+ +PPG++ + V+TP FR+ + V A RSL VP Sbjct: 116 LSGLRCGLRVHEGVITVVPPGAVTPANRDHFAVFTPYFRRWAEVAPRRVLAAPRSLTVPE 175 Query: 182 IRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQG 241 + P P +PR A + + R ++ Y D+P Sbjct: 176 L----PGHP--LPRRRSVTGTAPALARGGEREGRERLRRWLARDLDGYAEHHDDLPG-DA 228 Query: 242 TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSV 301 TS+LSP+L G LS + R + + GA +++ +L WR+F+ ++A P Sbjct: 229 TSRLSPHLHFGTLSAAELVQRARG-------RGGPGAQAFVRQLAWRDFHHQVLAARPDA 281 Query: 302 CMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFL 361 + P ++ W D + AWK+G TG P++DA MRQL GWMHNR R++TAS+L Sbjct: 282 AHAD-YRPRGDR--WRGDEREIAAWKEGRTGCPVVDAGMRQLRHEGWMHNRARLLTASYL 338 Query: 362 VKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQ 421 K L DWR+G +F+ L+DGD+A N WQW A TG D+ P R+ +P Q +RFDP Sbjct: 339 TKTLYTDWRVGARHFLELLVDGDIADNQLNWQWVAGTGTDTRP-GRVLSPLAQARRFDPH 397 Query: 422 GTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVD 462 G ++R W+PEL ++ + IH+P + L YP P++D Sbjct: 398 GAYVRRWVPELADLGDREIHSPETLDPARRARLGYPDPLID 438 >gi|255261881|ref|ZP_05341223.1| deoxyribodipyrimidine photo-lyase [Thalassiobium sp. R2A62] gi|255104216|gb|EET46890.1| deoxyribodipyrimidine photo-lyase [Thalassiobium sp. R2A62] Length = 473 Score = 204 bits (518), Expect = 3e-50, Method: Compositional matrix adjust. Identities = 149/480 (31%), Positives = 220/480 (45%), Gaps = 35/480 (7%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 ++W R DLR+ D+ AL AA ++ +FI G A + S+ + + Sbjct: 8 ILWFRRDLRLGDHPALAAAVATG-RPIVPLFIHDEVV---EGQGAAPKMRLGFSVEALDR 63 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130 SL G + D L + ++++R Y+ RD ++ L+ Sbjct: 64 SLHGTGSRLVLRRGRALDV----LRKVITETGAGAVYWSRLYDPLSKERDTAVKSALKDD 119 Query: 131 -VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189 V +SF +L P ++ YKV+TP KA+ + S P P RL P Sbjct: 120 GVTAQSFAGHLLFEPWTVETKTGGFYKVFTPMWKAVRGTDLPV---STPAPN-RLEAPQE 175 Query: 190 PSNIPRFFDYPFQA--------IDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQG 241 D+ A + +GEQ AL L F E+V Y RD+P + G Sbjct: 176 WPASDALADWAMDAAMMRGRDVLAAFCTVGEQAALSRLETFINERVGNYQTNRDLPRVDG 235 Query: 242 TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSV 301 TS+LS L+ G ++P CW+ L + A +L EL+WREF HL+ P + Sbjct: 236 TSRLSENLTYGEIAPLTCWH----AGWAALNHGDADAEVFLKELVWREFAYHLVHHTPHI 291 Query: 302 CMGKPFIPWTEKIEWNKDSHLLQA--WKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITAS 359 W + WN D +A WKQG TG +DAAMR++ G MHNR RMI AS Sbjct: 292 TTDNWKPDW-DGFAWNTDETDPKAVAWKQGRTGIRFVDAAMREMYVTGTMHNRGRMIVAS 350 Query: 360 FLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFD 419 +L K L+ W+IG ++F L+D D ASN GWQW++ +G D+ PYFR+FNP Q +FD Sbjct: 351 YLTKHLMCHWKIGLKWFEDCLVDWDPASNAMGWQWSSGSGPDATPYFRVFNPVTQLDKFD 410 Query: 420 PQGTFIRHWLPELNNVP----TQYIHA-PHSWLDKNDLSLNYPLPIVDHKKACHHTLNQY 474 ++ W+ E + P +Y A P W K + +YP P+V + L+ Y Sbjct: 411 KNREYVDRWIAEGRSQPHADALRYFDAVPEHWAIKP--TDDYPAPVVSAEDGRKAALDAY 468 >gi|302517648|ref|ZP_07269990.1| deoxyribodipyrimidine photo-lyase [Streptomyces sp. SPB78] gi|302426543|gb|EFK98358.1| deoxyribodipyrimidine photo-lyase [Streptomyces sp. SPB78] Length = 455 Score = 203 bits (517), Expect = 4e-50, Method: Compositional matrix adjust. Identities = 134/466 (28%), Positives = 224/466 (48%), Gaps = 36/466 (7%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M +V +DLR+ D+ L AA ++ +V+ +F+ P + +A ++ F+ L Sbjct: 1 MKASIVLYTSDLRLHDHPPLRAAVREAE-EVVPLFVRDPGIKKVGFHAANRAAFLADCLG 59 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRR-----DK 121 + L ++G + + + L +RV Y N R + Sbjct: 60 DLDAGLRERGGRLVV-RAGDPAQVVRELVGSTGAERVHVAAGVSAYARNRADRLRAALEG 118 Query: 122 LLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADL---RSLP 178 + ++H + + LPPG ++ + + V+TP+ + ++ L R L Sbjct: 119 TGAELVEHEAVITA------LPPGEVVPGSKDHFAVFTPYHRQWSAQHLREPLGAPRKLS 172 Query: 179 VPAIRLTGPVTPSNIPRFFDYPFQAIDPMFP-IGEQNALHILRKFCKEKVYYYVEQRDIP 237 VP+ V +PR D + I P GE+ L + ++ + Y + D Sbjct: 173 VPS-----KVRSDGVPRRED--VEGISPGLARGGEREGRAKLASWRRDGISRYEDLHDDL 225 Query: 238 AIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAF 297 A GTS+LSPYL G LS +C +R + +++ +L WR+F+ ++A Sbjct: 226 AGDGTSRLSPYLHFGALSAAECVHRARAAGGAGAD-------AFVRQLCWRDFHHQVLAA 278 Query: 298 YPSVCMGKPFIPWTEKIEWNKDS-HLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMI 356 P+ + + P + D+ H AW++G TG+P++DAAMRQL GWMHNR R++ Sbjct: 279 RPAAAH-EDYRPRGDHWRTGSDAEHEAAAWREGRTGYPVVDAAMRQLAHEGWMHNRGRLL 337 Query: 357 TASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGK 416 ASFL K L +DWR+G +F+ L+DGDL +N WQW A TG D+ P R+ NP Q + Sbjct: 338 AASFLTKTLYLDWRLGAAHFLDLLVDGDLVNNQMNWQWVAGTGTDTRP-GRVLNPLTQAR 396 Query: 417 RFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVD 462 ++D +G ++R W+PEL + + +H P W + YP P+VD Sbjct: 397 KYDSEGDYVRQWVPELRGIEGRAVHEP--WKRPREEREGYPEPLVD 440 >gi|3551217|dbj|BAA32807.1| blue-light photoreceptor [Adiantum capillus-veneris] gi|3551223|dbj|BAA32810.1| blue-light photoreceptor [Adiantum capillus-veneris] Length = 637 Score = 203 bits (517), Expect = 5e-50, Method: Compositional matrix adjust. Identities = 153/497 (30%), Positives = 238/497 (47%), Gaps = 43/497 (8%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M+ +VW R DLR+ DN AL AA V+ +FI TPE+ Q ++ SL+ Sbjct: 1 MACTIVWFRRDLRVEDNPALVAAVRA--GTVVPLFIWTPEEEGQFLPGRVSRWWLKQSLI 58 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYE-INEVRRDKLLEK 125 Q+ +SL+ G + + +I L Q T++F+N Y+ ++ VR K+ ++ Sbjct: 59 QLHQSLTSLGSPLIMRRAQS---AISVLSQIIKQTGATQVFFNHLYDPVSLVRDHKVKQE 115 Query: 126 RLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPV------ 179 LQ V +F+ +L P I + + + + F + ++ + LP Sbjct: 116 LLQAGVTVTTFNADLLYEPWEINDEQGRPFTTFAGFWSLCMDMAIEPEAPLLPPKRITKW 175 Query: 180 PAIRLTGPVTPSNIPRFF-----DYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQR 234 P I T P+ + D +A P G NA L F + Y R Sbjct: 176 PGIAATSPIEDLELENESEKGSNDLLARAWAP----GWANADRALEAFVSGPLMEYASNR 231 Query: 235 DIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFS----WLNELIWREF 290 TS LSP+L G LS R+ ++ ++ + V + + + A +L + RE+ Sbjct: 232 QKVDSATTSLLSPHLHYGELSVRKVFHSVRMKQVLWVKEGNADAEESVNLFLRSIGLREY 291 Query: 291 YRHLMAFYP-----SVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNT 345 R+L +P S+ F PW D + W+QG TG+P++DA MR+L Sbjct: 292 SRYLCFNFPFTHERSLLSNLKFFPW------RNDEGYFKVWRQGRTGYPLVDAGMRELWA 345 Query: 346 IGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPY 405 GW+HNR+R+I +SF VK L + WR G +YF LLD DL S+ GWQ+ + + D Sbjct: 346 TGWLHNRIRVIVSSFFVKFLQLPWRWGMKYFWDTLLDADLESDVLGWQYISGSLPDGHEL 405 Query: 406 FRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIH----APHSWLDKNDLSL--NYPLP 459 +RI NP ++G R+DP G ++R WLPEL+ +P+++IH AP + L + L NYP P Sbjct: 406 YRIDNPQLEGYRYDPCGEYVRRWLPELSRLPSEWIHHPWDAPPNVLRAAGIELGSNYPRP 465 Query: 460 IVDHKKACHHTLNQYYA 476 IV+ A L Q A Sbjct: 466 IVE-VAAARERLEQALA 481 >gi|55978285|ref|YP_145341.1| DNA photolyase [Thermus thermophilus HB8] gi|47606704|sp|P61497|PHR_THET8 RecName: Full=Deoxyribodipyrimidine photo-lyase; AltName: Full=DNA photolyase; AltName: Full=Photoreactivating enzyme gi|17942830|pdb|1IQR|A Chain A, Crystal Structure Of Dna Photolyase From Thermus Thermophilus gi|21465636|pdb|1IQU|A Chain A, Crystal Structure Of Photolyase-Thymine Complex gi|146386554|pdb|2J07|A Chain A, Thermus Dna Photolyase With 8-Hdf Antenna Chromophore gi|146386555|pdb|2J08|A Chain A, Thermus Dna Photolyase With 8-Iod-Riboflavin Antenna Chromophore gi|146386556|pdb|2J09|A Chain A, Thermus Dna Photolyase With Fmn Antenna Chromophore gi|15080709|dbj|BAB61864.2| DNA photolyase [Thermus thermophilus] gi|55773458|dbj|BAD71898.1| DNA photolyase [Thermus thermophilus HB8] Length = 420 Score = 203 bits (517), Expect = 5e-50, Method: Compositional matrix adjust. Identities = 141/432 (32%), Positives = 206/432 (47%), Gaps = 49/432 (11%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M LVW R DLR+ D+ AL A + V+ + + P + + R+ + ++ Sbjct: 1 MGPLLVWHRGDLRLHDHPALLEAL--ARGPVVGLVVLDPNNLK---TTPRRRAWFLENVR 55 Query: 67 QVQKSLSQKGI---VFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLL 123 ++++ +G V + ++ L + + + Y R Y VR + Sbjct: 56 ALREAYRARGGALWVLEGLPWEKVPEAARRLKAKAVYALTSHTPYGR-YRDGRVREALPV 114 Query: 124 EKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIR 183 L + Y+VYTPF + L + LP P Sbjct: 115 PLHLLPAPHLLP-------------PDLPRAYRVYTPFSR-----LYRGAAPPLPPPEAL 156 Query: 184 LTGPVTPSNIPRFFDYPFQAIDPMFPI---GEQNALHILRKFCKEKVYYYVEQRDIPAIQ 240 GP IPR DP P+ GE+ AL LR F + K+ Y E+RD + Sbjct: 157 PKGPEE-GEIPR--------EDPGLPLPEPGEEAALAGLRAFLEAKLPRYAEERDRLDGE 207 Query: 241 GTSQLSPYLSIGVLSPR-QCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYP 299 G S+LSPY ++GVLSPR W + + GA W+ EL+WR+F HL+ +P Sbjct: 208 GGSRLSPYFALGVLSPRLAAWEAER--------RGGEGARKWVAELLWRDFSYHLLYHFP 259 Query: 300 SVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITAS 359 + +P P + W +D L QAW +G TG P++DAAMR+L+ G++ NR RM A Sbjct: 260 WMAE-RPLDPRFQAFPWQEDEALFQAWYEGKTGVPLVDAAMRELHATGFLSNRARMNAAQ 318 Query: 360 FLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFD 419 F VK LL+ W+ EE F LLDGD A N GWQWA G D+ PYFR+FNP +QG+R D Sbjct: 319 FAVKHLLLPWKRCEEAFRHLLLDGDRAVNLQGWQWAGGLGVDAAPYFRVFNPVLQGERHD 378 Query: 420 PQGTFIRHWLPE 431 P+G +++ W PE Sbjct: 379 PEGRWLKRWAPE 390 >gi|57866289|ref|YP_187945.1| deoxyribodipyrimidine photolyase [Staphylococcus epidermidis RP62A] gi|251810120|ref|ZP_04824593.1| deoxyribodipyrimidine photo-lyase [Staphylococcus epidermidis BCM-HMP0060] gi|282875733|ref|ZP_06284604.1| FAD binding domain of DNA photolyase [Staphylococcus epidermidis SK135] gi|293368145|ref|ZP_06614776.1| deoxyribodipyrimidine photo-lyase [Staphylococcus epidermidis M23864:W2(grey)] gi|57636947|gb|AAW53735.1| deoxyribodipyrimidine photolyase, putative [Staphylococcus epidermidis RP62A] gi|251806348|gb|EES59005.1| deoxyribodipyrimidine photo-lyase [Staphylococcus epidermidis BCM-HMP0060] gi|281295760|gb|EFA88283.1| FAD binding domain of DNA photolyase [Staphylococcus epidermidis SK135] gi|291317717|gb|EFE58132.1| deoxyribodipyrimidine photo-lyase [Staphylococcus epidermidis M23864:W2(grey)] gi|329723282|gb|EGG59812.1| FAD binding domain of DNA photolyase [Staphylococcus epidermidis VCU144] gi|329735614|gb|EGG71898.1| deoxyribodipyrimidine photo-lyase family protein [Staphylococcus epidermidis VCU045] Length = 457 Score = 203 bits (517), Expect = 5e-50, Method: Compositional matrix adjust. Identities = 104/274 (37%), Positives = 162/274 (59%), Gaps = 10/274 (3%) Query: 208 FPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEF 267 + I E++ + +F + + Y E R+ TSQLS YL+ G++ Q +N L + + Sbjct: 187 YGISERDVQNRWSEFLSQDIENYKENREYLPEVLTSQLSIYLAYGMIDIIQVFNDLLQNY 246 Query: 268 VDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWK 327 K + +++ ELI+REFY LM YP F ++++W+ + + WK Sbjct: 247 D----KNEQNYETFIRELIFREFYYVLMTNYPETA-HVAFKEKYQQLKWSYNEENFKLWK 301 Query: 328 QGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLAS 387 G TGFPIIDAAM +L T G+MHNR+RM+ + FL KDL +DW GE +F +L+D D AS Sbjct: 302 DGNTGFPIIDAAMEELKTTGFMHNRMRMVVSQFLTKDLFIDWIWGESFFKQKLIDYDAAS 361 Query: 388 NNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWL 447 N GWQW+ASTG D+VPYFR+FNP Q +RFD +I+ ++P LN V +Y+H H + Sbjct: 362 NVHGWQWSASTGTDAVPYFRMFNPIRQSERFDNNARYIKTYIPRLNQVDAKYLHDTHKFE 421 Query: 448 DK-----NDLSLNYPLPIVDHKKACHHTLNQYYA 476 + ++ +YP ++DHK++ ++++ A Sbjct: 422 QQIKGQGVEIGKDYPKQMIDHKESRQRVMSEFKA 455 >gi|227553399|ref|ZP_03983448.1| possible deoxyribodipyrimidine photolyase [Enterococcus faecalis HH22] gi|227177482|gb|EEI58454.1| possible deoxyribodipyrimidine photolyase [Enterococcus faecalis HH22] Length = 208 Score = 203 bits (516), Expect = 5e-50, Method: Compositional matrix adjust. Identities = 103/201 (51%), Positives = 131/201 (65%), Gaps = 13/201 (6%) Query: 288 REFYRHLMAFYP---SVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLN 344 R+FY + + +P + + F I+W D + W++G TG+PIIDAAMRQLN Sbjct: 1 RDFYNMIYSAFPQQKEEAIQEKF----RYIQWTNDPEMFVKWQKGETGYPIIDAAMRQLN 56 Query: 345 TIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVP 404 GWMHNRLRMITASFLVK+L +DWR GE+YF L+D D A+N GGWQWAASTG D+VP Sbjct: 57 QTGWMHNRLRMITASFLVKNLHIDWRWGEKYFQKMLIDYDAANNIGGWQWAASTGTDAVP 116 Query: 405 YFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND------LSLNYPL 458 YFRIFNP IQ K+FD G FI+ ++PEL VP +YIH P+ + L NYP Sbjct: 117 YFRIFNPIIQSKKFDNDGQFIKKYVPELKQVPQKYIHQPNLMNEALQTQYHVHLGENYPK 176 Query: 459 PIVDHKKACHHTLNQYYAAKK 479 PIVD+ + TL Y A+K+ Sbjct: 177 PIVDYASSKKQTLFLYEASKE 197 >gi|291296619|ref|YP_003508017.1| Deoxyribodipyrimidine photo-lyase [Meiothermus ruber DSM 1279] gi|290471578|gb|ADD28997.1| Deoxyribodipyrimidine photo-lyase [Meiothermus ruber DSM 1279] Length = 433 Score = 203 bits (516), Expect = 6e-50, Method: Compositional matrix adjust. Identities = 141/429 (32%), Positives = 211/429 (49%), Gaps = 34/429 (7%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 ++LVW R DLR+ DN AL A A + V Q + R+ + Y + + Sbjct: 1 MNLVWHRADLRLHDNPALAEALRTGPAVGLVVLDPNILQ----NTTPRRRAWFYQNTQAL 56 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128 +++ + +G + + E L + V ++F R RD+ + + L Sbjct: 57 REAYAARGGLLLVRSGLPW----EVLPRVAAELGVQRVFAVRNSTPYARFRDQKVGEALP 112 Query: 129 HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188 R+ + + PG+I+ Y V+TP+ K + P P + L P Sbjct: 113 GRL--RWLPGQYIHEPGTIVKPDGGGYTVFTPYSKRWW---------AAPEPVL-LEAPA 160 Query: 189 --TPSNIPRFFD---YPFQAID-PMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGT 242 P ++P +D P +A D P+ P GE AL L F ++K+ +Y + RD A +G Sbjct: 161 HFPPFSLPPDYDPGAIPQEASDVPLPPAGEAAALKALEVFLRDKLPHYHQTRDGLAGEGV 220 Query: 243 SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVC 302 S+LS Y ++GVLSPR + L GA W+NEL WR+F L+ P + Sbjct: 221 SRLSYYFTLGVLSPRLAARKA-------LQVGGEGARKWVNELCWRDFSGDLLYHRPQM- 272 Query: 303 MGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLV 362 M + F P E + WN DS + +AW G TG P++DA MR+L G++ NR RM+ A F V Sbjct: 273 MTQAFDPRWEGLPWNHDSEVFEAWLHGQTGIPVVDACMRELQATGFLSNRGRMVVAQFAV 332 Query: 363 KDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQG 422 K L+ W+ E F + LLDGD ASN GW WA G D+ PYFR+FN Q + DPQG Sbjct: 333 KLALLPWQKCERAFRNLLLDGDNASNLQGWHWAGGLGVDAAPYFRVFNLITQAETHDPQG 392 Query: 423 TFIRHWLPE 431 +++ W+PE Sbjct: 393 LWLKRWVPE 401 >gi|167903517|ref|ZP_02490722.1| deoxyribodipyrimidine photolyase [Burkholderia pseudomallei NCTC 13177] Length = 302 Score = 203 bits (516), Expect = 6e-50, Method: Compositional matrix adjust. Identities = 114/277 (41%), Positives = 152/277 (54%), Gaps = 12/277 (4%) Query: 210 IGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVD 269 GE A LR F ++ Y +RD P I TS+LSPY+ G LS RQ W+ + + Sbjct: 30 FGEDAAHRRLRAFVDSRLGGYAAERDRPGIASTSRLSPYVRFGNLSARQLWHAAADAYAH 89 Query: 270 LLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQG 329 ++ +L+EL WREF + +P + + + + W D L AW++G Sbjct: 90 GAAT-QADLDKFLSELGWREFGWTQLHHFPDLPR-RNLRHTLDGMPWRDDPAALAAWRRG 147 Query: 330 YTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNN 389 TG+P +DA MR+L GWMHNR+RM+ ASFLVK LL+DWR GE +F L+D D ASN Sbjct: 148 ATGYPFVDAGMRELWATGWMHNRVRMVCASFLVKHLLIDWRAGEAWFWDTLVDADAASNA 207 Query: 390 GGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDK 449 WQW A G D+ PYFRIFNP QG++FDP G ++R W+PEL +P IH P W Sbjct: 208 ANWQWVAGCGADAAPYFRIFNPVAQGRKFDPDGAYVRRWVPELAGLPPATIHEP--WAAP 265 Query: 450 ND--------LSLNYPLPIVDHKKACHHTLNQYYAAK 478 L YPLPIV H A L+ + A + Sbjct: 266 GAQLAAAGVRLGETYPLPIVAHDAARRRALDAFGAIR 302 >gi|167825044|ref|ZP_02456515.1| deoxyribodipyrimidine photolyase [Burkholderia pseudomallei 9] Length = 279 Score = 203 bits (516), Expect = 6e-50, Method: Compositional matrix adjust. Identities = 114/277 (41%), Positives = 152/277 (54%), Gaps = 12/277 (4%) Query: 210 IGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVD 269 GE A LR F ++ Y +RD P I TS+LSPY+ G LS RQ W+ + + Sbjct: 7 FGEDAAHRRLRAFVDSRLGGYAAERDRPGIASTSRLSPYVRFGNLSARQLWHAAADAYAH 66 Query: 270 LLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQG 329 ++ +L+EL WREF + +P + + + + W D L AW++G Sbjct: 67 GAAT-QADLDKFLSELGWREFGWTQLHHFPDLPR-RNLRHTLDGMPWRDDPAALAAWRRG 124 Query: 330 YTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNN 389 TG+P +DA MR+L GWMHNR+RM+ ASFLVK LL+DWR GE +F L+D D ASN Sbjct: 125 ATGYPFVDAGMRELWATGWMHNRVRMVCASFLVKHLLIDWRAGEAWFWDTLVDADAASNA 184 Query: 390 GGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDK 449 WQW A G D+ PYFRIFNP QG++FDP G ++R W+PEL +P IH P W Sbjct: 185 ANWQWVAGCGADAAPYFRIFNPVAQGRKFDPDGAYVRRWVPELAGLPPATIHEP--WAAP 242 Query: 450 ND--------LSLNYPLPIVDHKKACHHTLNQYYAAK 478 L YPLPIV H A L+ + A + Sbjct: 243 GAQLAAAGVRLGETYPLPIVAHDAARRRALDAFGAIR 279 >gi|242242053|ref|ZP_04796498.1| deoxyribodipyrimidine photo-lyase [Staphylococcus epidermidis W23144] gi|242234492|gb|EES36804.1| deoxyribodipyrimidine photo-lyase [Staphylococcus epidermidis W23144] Length = 457 Score = 202 bits (515), Expect = 7e-50, Method: Compositional matrix adjust. Identities = 103/274 (37%), Positives = 163/274 (59%), Gaps = 10/274 (3%) Query: 208 FPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEF 267 + I E++ + +F + + Y E R+ TSQLS YL+ G++ Q +N L + + Sbjct: 187 YGISERDVQNRWSEFLSQDIENYKENREYLPEVLTSQLSIYLAYGMIDIIQVFNDLLQNY 246 Query: 268 VDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWK 327 K + +++ ELI+REFY LM YP F ++++W+ + + WK Sbjct: 247 D----KNEQNYEAFIRELIFREFYYVLMTNYPETAHV-AFKEKYQQLKWSYNEENFKLWK 301 Query: 328 QGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLAS 387 G TGFPIIDAAM +L T G+MHNR+RM+ + FL KDL +DW GE +F +L+D D AS Sbjct: 302 DGNTGFPIIDAAMEELKTTGFMHNRMRMVVSQFLTKDLFIDWIWGESFFKQKLIDYDAAS 361 Query: 388 NNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWL 447 N GWQW+ASTG D+VPYFR+FNP Q +RFD +I+ ++P+LN + +Y+H H + Sbjct: 362 NVHGWQWSASTGTDAVPYFRMFNPIRQSERFDNNARYIKTYIPKLNQIDAKYLHDTHKFE 421 Query: 448 DK-----NDLSLNYPLPIVDHKKACHHTLNQYYA 476 + ++ +YP ++DHK++ ++++ A Sbjct: 422 QQIKGQGVEIGKDYPKQMIDHKESRQRVMSEFKA 455 >gi|167739436|ref|ZP_02412210.1| deoxyribodipyrimidine photolyase [Burkholderia pseudomallei 14] Length = 280 Score = 202 bits (515), Expect = 7e-50, Method: Compositional matrix adjust. Identities = 114/277 (41%), Positives = 152/277 (54%), Gaps = 12/277 (4%) Query: 210 IGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVD 269 GE A LR F ++ Y +RD P I TS+LSPY+ G LS RQ W+ + + Sbjct: 8 FGEDAAHRRLRAFVDSRLGGYAAERDRPGIASTSRLSPYVRFGNLSARQLWHAAADAYAH 67 Query: 270 LLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQG 329 ++ +L+EL WREF + +P + + + + W D L AW++G Sbjct: 68 GAAT-QADLDKFLSELGWREFGWTQLHHFPDLPR-RNLRHTLDGMPWRDDPAALAAWRRG 125 Query: 330 YTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNN 389 TG+P +DA MR+L GWMHNR+RM+ ASFLVK LL+DWR GE +F L+D D ASN Sbjct: 126 ATGYPFVDAGMRELWATGWMHNRVRMVCASFLVKHLLIDWRAGEAWFWDTLVDADAASNA 185 Query: 390 GGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDK 449 WQW A G D+ PYFRIFNP QG++FDP G ++R W+PEL +P IH P W Sbjct: 186 ANWQWVAGCGADAAPYFRIFNPVAQGRKFDPDGAYVRRWVPELAGLPPATIHEP--WAAP 243 Query: 450 ND--------LSLNYPLPIVDHKKACHHTLNQYYAAK 478 L YPLPIV H A L+ + A + Sbjct: 244 GAQLAAAGVRLGETYPLPIVAHDAARRRALDAFGAIR 280 >gi|167720442|ref|ZP_02403678.1| deoxyribodipyrimidine photolyase [Burkholderia pseudomallei DM98] Length = 272 Score = 202 bits (515), Expect = 7e-50, Method: Compositional matrix adjust. Identities = 114/276 (41%), Positives = 152/276 (55%), Gaps = 12/276 (4%) Query: 211 GEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDL 270 GE A LR F ++ Y +RD P I TS+LSPY+ G LS RQ W+ + + Sbjct: 1 GEDAAHRRLRAFVDSRLGGYAAERDRPGIASTSRLSPYVRFGNLSARQLWHAAADAYAHG 60 Query: 271 LIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGY 330 ++ +L+EL WREF + +P + + + + W D L AW++G Sbjct: 61 AAT-QADLDKFLSELGWREFGWTQLHHFPDLPR-RNLRHTLDGMPWRDDPAALAAWRRGA 118 Query: 331 TGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNG 390 TG+P +DA MR+L GWMHNR+RM+ ASFLVK LL+DWR GE +F L+D D ASN Sbjct: 119 TGYPFVDAGMRELWATGWMHNRVRMVCASFLVKHLLIDWRAGEAWFWDTLVDADAASNAA 178 Query: 391 GWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKN 450 WQW A G D+ PYFRIFNP QG++FDP G ++R W+PEL +P IH P W Sbjct: 179 NWQWVAGCGADAAPYFRIFNPVAQGRKFDPDGAYVRRWVPELAGLPPATIHEP--WAAPG 236 Query: 451 D--------LSLNYPLPIVDHKKACHHTLNQYYAAK 478 L YPLPIV H A L+ + A + Sbjct: 237 AQLAAAGVRLGETYPLPIVAHDAARRRALDAFGAIR 272 >gi|167846551|ref|ZP_02472059.1| deoxyribodipyrimidine photolyase [Burkholderia pseudomallei B7210] Length = 289 Score = 202 bits (515), Expect = 8e-50, Method: Compositional matrix adjust. Identities = 114/277 (41%), Positives = 152/277 (54%), Gaps = 12/277 (4%) Query: 210 IGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVD 269 GE A LR F ++ Y +RD P I TS+LSPY+ G LS RQ W+ + + Sbjct: 17 FGEDAAHRRLRAFVDSRLGGYAAERDRPGIASTSRLSPYVRFGNLSARQLWHAAADAYAH 76 Query: 270 LLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQG 329 ++ +L+EL WREF + +P + + + + W D L AW++G Sbjct: 77 GAAT-QADLDKFLSELGWREFGWTQLHHFPDLPR-RNLRHTLDGMPWRDDPAALAAWRRG 134 Query: 330 YTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNN 389 TG+P +DA MR+L GWMHNR+RM+ ASFLVK LL+DWR GE +F L+D D ASN Sbjct: 135 ATGYPFVDAGMRELWATGWMHNRVRMVCASFLVKHLLIDWRAGEAWFWDTLVDADAASNA 194 Query: 390 GGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDK 449 WQW A G D+ PYFRIFNP QG++FDP G ++R W+PEL +P IH P W Sbjct: 195 ANWQWVAGCGADAAPYFRIFNPVAQGRKFDPDGAYVRRWVPELAGLPPATIHEP--WAAP 252 Query: 450 ND--------LSLNYPLPIVDHKKACHHTLNQYYAAK 478 L YPLPIV H A L+ + A + Sbjct: 253 GAQLAAAGVRLGETYPLPIVAHDAARRRALDAFGAIR 289 >gi|167919769|ref|ZP_02506860.1| deoxyribodipyrimidine photolyase [Burkholderia pseudomallei BCC215] Length = 299 Score = 202 bits (515), Expect = 8e-50, Method: Compositional matrix adjust. Identities = 114/277 (41%), Positives = 152/277 (54%), Gaps = 12/277 (4%) Query: 210 IGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVD 269 GE A LR F ++ Y +RD P I TS+LSPY+ G LS RQ W+ + + Sbjct: 27 FGEDAAHRRLRAFVDSRLGGYAAERDRPGIASTSRLSPYVRFGNLSARQLWHAAADAYAH 86 Query: 270 LLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQG 329 ++ +L+EL WREF + +P + + + + W D L AW++G Sbjct: 87 GAAT-QADLDKFLSELGWREFGWTQLHHFPDLPR-RNLRHTLDGMPWRDDPAALAAWRRG 144 Query: 330 YTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNN 389 TG+P +DA MR+L GWMHNR+RM+ ASFLVK LL+DWR GE +F L+D D ASN Sbjct: 145 ATGYPFVDAGMRELWATGWMHNRVRMVCASFLVKHLLIDWRAGEAWFWDTLVDADAASNA 204 Query: 390 GGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDK 449 WQW A G D+ PYFRIFNP QG++FDP G ++R W+PEL +P IH P W Sbjct: 205 ANWQWVAGCGADAAPYFRIFNPVAQGRKFDPDGAYVRRWVPELAGLPPATIHEP--WAAP 262 Query: 450 ND--------LSLNYPLPIVDHKKACHHTLNQYYAAK 478 L YPLPIV H A L+ + A + Sbjct: 263 GAQLAAAGVRLGETYPLPIVAHDAARRRALDAFGAIR 299 >gi|319401235|gb|EFV89450.1| deoxyribodipyrimidine photo-lyase [Staphylococcus epidermidis FRI909] Length = 457 Score = 202 bits (515), Expect = 8e-50, Method: Compositional matrix adjust. Identities = 103/274 (37%), Positives = 163/274 (59%), Gaps = 10/274 (3%) Query: 208 FPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEF 267 + I E++ + +F + + Y E R+ TSQLS YL+ G++ Q +N L + + Sbjct: 187 YGISERDVQNRWSEFLSQDIENYKENREYLPEVLTSQLSIYLAYGMIDIIQVFNDLLQNY 246 Query: 268 VDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWK 327 K + +++ ELI+REFY LM YP F ++++W+ + + WK Sbjct: 247 D----KNEQNYEAFIRELIFREFYYVLMTNYPETAHV-AFKEKYQQLKWSYNEENFKLWK 301 Query: 328 QGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLAS 387 G TGFPIIDAAM +L T G+MHNR+RM+ + FL KDL +DW GE +F +L+D D AS Sbjct: 302 DGNTGFPIIDAAMEELKTTGFMHNRMRMVVSQFLTKDLFIDWIWGESFFKQKLIDYDAAS 361 Query: 388 NNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWL 447 N GWQW+ASTG D+VPYFR+FNP Q +RFD +I+ ++P+LN + +Y+H H + Sbjct: 362 NVHGWQWSASTGTDAVPYFRMFNPIRQSERFDNNARYIKTYIPKLNQIDAKYLHDTHKFE 421 Query: 448 DK-----NDLSLNYPLPIVDHKKACHHTLNQYYA 476 + ++ +YP ++DHK++ ++++ A Sbjct: 422 QQIKGQGVEIGKDYPKQMIDHKESRQRVMSEFKA 455 >gi|167911767|ref|ZP_02498858.1| deoxyribodipyrimidine photolyase [Burkholderia pseudomallei 112] Length = 288 Score = 202 bits (515), Expect = 8e-50, Method: Compositional matrix adjust. Identities = 114/277 (41%), Positives = 152/277 (54%), Gaps = 12/277 (4%) Query: 210 IGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVD 269 GE A LR F ++ Y +RD P I TS+LSPY+ G LS RQ W+ + + Sbjct: 16 FGEDAAHRRLRAFVDSRLGGYAAERDRPGIASTSRLSPYVRFGNLSARQLWHAAADAYAH 75 Query: 270 LLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQG 329 ++ +L+EL WREF + +P + + + + W D L AW++G Sbjct: 76 GAAT-QADLDKFLSELGWREFGWTQLHHFPDLPR-RNLRHTLDGMPWRDDPAALAAWRRG 133 Query: 330 YTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNN 389 TG+P +DA MR+L GWMHNR+RM+ ASFLVK LL+DWR GE +F L+D D ASN Sbjct: 134 ATGYPFVDAGMRELWATGWMHNRVRMVCASFLVKHLLIDWRAGEAWFWDTLVDADAASNA 193 Query: 390 GGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDK 449 WQW A G D+ PYFRIFNP QG++FDP G ++R W+PEL +P IH P W Sbjct: 194 ANWQWVAGCGADAAPYFRIFNPVAQGRKFDPDGAYVRRWVPELAGLPPATIHEP--WAAP 251 Query: 450 ND--------LSLNYPLPIVDHKKACHHTLNQYYAAK 478 L YPLPIV H A L+ + A + Sbjct: 252 GAQLAAAGVRLGETYPLPIVAHDAARRRALDAFGAIR 288 >gi|167816639|ref|ZP_02448319.1| deoxyribodipyrimidine photolyase [Burkholderia pseudomallei 91] Length = 291 Score = 202 bits (515), Expect = 8e-50, Method: Compositional matrix adjust. Identities = 114/277 (41%), Positives = 152/277 (54%), Gaps = 12/277 (4%) Query: 210 IGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVD 269 GE A LR F ++ Y +RD P I TS+LSPY+ G LS RQ W+ + + Sbjct: 19 FGEDAAHRRLRAFVDSRLGGYAAERDRPGIASTSRLSPYVRFGNLSARQLWHAAADAYAH 78 Query: 270 LLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQG 329 ++ +L+EL WREF + +P + + + + W D L AW++G Sbjct: 79 GAAT-QADLDKFLSELGWREFGWTQLHHFPDLPR-RNLRHTLDGMPWRDDPAALAAWRRG 136 Query: 330 YTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNN 389 TG+P +DA MR+L GWMHNR+RM+ ASFLVK LL+DWR GE +F L+D D ASN Sbjct: 137 ATGYPFVDAGMRELWATGWMHNRVRMVCASFLVKHLLIDWRAGEAWFWDTLVDADAASNA 196 Query: 390 GGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDK 449 WQW A G D+ PYFRIFNP QG++FDP G ++R W+PEL +P IH P W Sbjct: 197 ANWQWVAGCGADAAPYFRIFNPVAQGRKFDPDGAYVRRWVPELAGLPPATIHEP--WAAP 254 Query: 450 ND--------LSLNYPLPIVDHKKACHHTLNQYYAAK 478 L YPLPIV H A L+ + A + Sbjct: 255 GAQLAAAGVRLGETYPLPIVAHDAARRRALDAFGAIR 291 >gi|154508252|ref|ZP_02043894.1| hypothetical protein ACTODO_00748 [Actinomyces odontolyticus ATCC 17982] gi|153797886|gb|EDN80306.1| hypothetical protein ACTODO_00748 [Actinomyces odontolyticus ATCC 17982] Length = 475 Score = 202 bits (514), Expect = 9e-50, Method: Compositional matrix adjust. Identities = 143/448 (31%), Positives = 215/448 (47%), Gaps = 42/448 (9%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFI----ATPEQWRQHG---ISARQSHFIYA 63 L+WLR+DLR+ D+ AL AAC +D V+A++I T E +HG + A + + Sbjct: 4 LIWLRDDLRLADHPALTAACSAADGPVVALWIHETRRTDEDNNRHGPRPLGAATRWWYHR 63 Query: 64 SLLQVQKSLSQKGI--VFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDK 121 SL Q+ L+ GI VF +N + +D+ + T + + R+Y R D Sbjct: 64 SLQQLAPRLADLGIPLVFARGDAANVMRQV--VDAL----QPTVVHWTRRYAPAACRLDA 117 Query: 122 LLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQN-----------LV 170 +++ L+ R S S+L P + Y+V+TPF A+ + Sbjct: 118 AIKQELKSRTEVHSHPGSLLAEPWLMQTVNGSHYQVFTPFSHAVADLPLGPLLPEPSPIG 177 Query: 171 QADLRSLPVPAIRLTGPVTP-SNIPRFFDYPF---QAIDPMFPIGEQNALHILRKFCKEK 226 + + +R G + +I + P + + + GE A L Sbjct: 178 ERGGADTALATLREDGVLQNLEDIGLLDEGPAWWEETLAQHWEPGELAARQQLDAI-DSW 236 Query: 227 VYYYVEQRDIPAIQ-GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGA--FSWLN 283 + Y +RD+P + TS++SP L G LSPRQ SG +W Sbjct: 237 LPGYATRRDLPGEETSTSRISPRLRCGELSPRQA-------VAAARTSTASGEDIVAWTR 289 Query: 284 ELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQL 343 +L WREF HL+ + P P + + D HL +AW+QG TG ++DA MRQL Sbjct: 290 QLYWREFSWHLL-HHREHLEDTPMRPAFAEFPYYPDDHLARAWRQGRTGIDLVDAGMRQL 348 Query: 344 NTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSV 403 GWMHNR+RM+ AS K++L W+ GE++F L+D D A+N WQW A G D+ Sbjct: 349 WQTGWMHNRVRMVAASLFTKNMLQPWQDGEQWFWETLVDADEANNPISWQWVAGCGADAA 408 Query: 404 PYFRIFNPTIQGKRFDPQGTFIRHWLPE 431 PYFRIFNP +Q RFDP+ ++R W+PE Sbjct: 409 PYFRIFNPDLQRTRFDPRSRYVRRWIPE 436 >gi|322510954|gb|ADX06267.1| putative deoxyribodipyrimidine photo-lyase [Organic Lake phycodnavirus 2] Length = 439 Score = 202 bits (514), Expect = 1e-49, Method: Compositional matrix adjust. Identities = 146/462 (31%), Positives = 239/462 (51%), Gaps = 40/462 (8%) Query: 17 DLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHG-ISARQSHFIYASLLQVQKSLSQK 75 D R DN L A + D +I +FI TPEQ +++ +S F+ SL +++ + Sbjct: 10 DYRSFDNLGLNYAMKHFD-HIIPIFIFTPEQIKKNKYLSNNSLQFLCESLEELRDHIPLH 68 Query: 76 GIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK-RLQHRVICK 134 +F + D+++ L ++ + +N+ Y + RD+ ++ ++ + C Sbjct: 69 --IF-------YGDNLKVLSKINKTIPISNIVFNKDYTPYAIERDQSIDSWCVKKNINCV 119 Query: 135 SFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPSNIP 194 +D +L P G Y VYTPF+ ++++ + + ++ P+ + P+ Sbjct: 120 QIEDYLLSPIGRFNKTDGSPYVVYTPFKNNVLKHSI-PNTQNHPLKHLIYHKPL------ 172 Query: 195 RFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVL 254 Y +D + N + RK + ++ ++ D +I+ T+QLS Y+ G L Sbjct: 173 EHISYYSPNLD-YYTYNPHNNVKGGRKNGLKYLHTNIDYEDQLSIK-TTQLSAYIKYGCL 230 Query: 255 SPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK-PFIPWTEK 313 S R+ ++ K+E + +LIWREFY ++ +YP++ F +K Sbjct: 231 SIREVYHHFKDENLKA-------------QLIWREFYYYINYYYPNLLKKSVAFQMKYDK 277 Query: 314 IEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGE 373 I+W + L+ WK+G TGFP++DA MRQLN G+MHNR R+I ++FL + L +DWR+GE Sbjct: 278 IKWVNNKKHLEWWKRGETGFPVVDACMRQLNKTGYMHNRGRLIVSNFLNRLLGLDWRLGE 337 Query: 374 EYFMSQLLDGDLASNNGGWQWAASTGNDSVPYF-RIFNPTIQGKRFDPQGTFIRHWLPEL 432 YF QL+D D NNG WQW +S G D+ PY R+FNP +Q KRFDP +I+ W+PEL Sbjct: 338 LYFAQQLIDYDPCVNNGNWQWVSSVGIDTKPYSQRVFNPWLQSKRFDPHCIYIKEWIPEL 397 Query: 433 NNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQY 474 N+VP I H W D + Y LPI+D+ A +L Y Sbjct: 398 NDVPPNEI---HQWDLHGDPDI-YILPIIDYTMARERSLQMY 435 >gi|312194378|ref|YP_004014439.1| deoxyribodipyrimidine photo-lyase [Frankia sp. EuI1c] gi|311225714|gb|ADP78569.1| Deoxyribodipyrimidine photo-lyase [Frankia sp. EuI1c] Length = 447 Score = 202 bits (513), Expect = 1e-49, Method: Compositional matrix adjust. Identities = 141/460 (30%), Positives = 209/460 (45%), Gaps = 31/460 (6%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M+ V+ R DLR+ DN L AA + + +F+ R + + F+ SL Sbjct: 1 MTTLAVFTR-DLRVHDNPMLTAAALAGE-HTVPLFVLDAAMARSGFATGARERFLAESLA 58 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 + +SL + G D +E + + + RR+ L Sbjct: 59 DLDRSLRELGGRL----VVRAGDPVEQVCRVADEVDAGTVHLAADCSGYAQRREAALRSA 114 Query: 127 LQHRVICKSFDDS--VLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL 184 L R D V++ PG + Y V+ + + A R + P RL Sbjct: 115 LAERGRTLHCHDEAHVVVAPGRVTPAGRDHYAVFGAYHR----RWEAAGWRRVIAPPARL 170 Query: 185 TGP-VTPSNIPRFFD-YPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGT 242 P V P +P ++ F GE ++ +E V Y E+RD A T Sbjct: 171 RLPAVDPGALPPIGGPAGGESAGGGFHGGETVGRRRAEEWLREGVEVYDERRDQLAADAT 230 Query: 243 SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSG--AFSWLNELIWREFYRHLMAFYPS 300 S+LSPYL +G LS ++L + +G A ++ +L WR+F+ L+A P+ Sbjct: 231 SRLSPYLHLGCLS-----------ALELATQAGTGDAARDFVRQLAWRDFFHQLLAARPA 279 Query: 301 VCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASF 360 W D L AW+ G+TG PI+DA MRQL T GW+ NR RMITASF Sbjct: 280 AAHEDYR---DAHRTWRDDPAALDAWRSGHTGIPIVDAGMRQLLTEGWLPNRARMITASF 336 Query: 361 LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDP 420 L K L +DWR G ++ LLD D+A+N+ WQW A TG D+ P R+ NP Q +RFDP Sbjct: 337 LTKTLGLDWRAGAAHYTEHLLDADVANNSLNWQWVAGTGTDTRP-GRVLNPLRQAERFDP 395 Query: 421 QGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPI 460 G ++R +PEL +P + +H P D+ +L+YP P+ Sbjct: 396 DGVYVRRHVPELAGLPGRQVHRPWRLPDRERAALDYPEPL 435 >gi|261876463|dbj|BAI47557.1| cryptochrome2 [Glycine max] Length = 600 Score = 202 bits (513), Expect = 1e-49, Method: Compositional matrix adjust. Identities = 148/479 (30%), Positives = 236/479 (49%), Gaps = 24/479 (5%) Query: 6 AMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASL 65 M+ +VW R DLRI DN AL AA D V V+I P++ Q ++ SL Sbjct: 2 GMNKTIVWFRRDLRIEDNPALAAAAAAKDGSVFPVYIWCPKEEGQFYPGRVSRWWLKQSL 61 Query: 66 LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYE-INEVRRDKLLE 124 + KSL G + D ++E L + TK+ +N Y+ ++ VR + E Sbjct: 62 AHLDKSLKSLGAELMLIKT---DSTLEALLECVNAIQATKVVFNHLYDPVSLVRDHNIKE 118 Query: 125 KRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL 184 K ++ + KS++ +L P SI + + + PF + ++A +P I Sbjct: 119 KLVELGISVKSYNGDLLFEPWSIYDETGHAFTTFDPFWNRCLHMQMKA-FSLIPPQLILA 177 Query: 185 TGPVTPSNIPRFF--DYPFQAIDPM-----FPIGEQNALHILRKFCKEKVYYYVEQRDIP 237 G V +I + D ++ + + +P G L +F ++ + +Y + R Sbjct: 178 EGKVGKCSIEQLGLEDESEKSSNALLGRAWYP-GWNKTDKALTEFVEQHLLHYSKNRLKV 236 Query: 238 AIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSG----AFSWLNELIWREFYRH 293 TS LSPY+ G LS R+ + + + + + S A +L + RE+ R+ Sbjct: 237 GGDSTSLLSPYIHFGELSVRKVFQLARTKQILWANEGNSAGEESATVFLRAIGLREYSRY 296 Query: 294 LMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRL 353 L +PS + KP + W D +AW+QG TG+P++DA MR+L GW+HN++ Sbjct: 297 LCFNFPST-IEKPLLGNLAFFPWKTDPANFKAWRQGRTGYPLVDAGMRELWATGWIHNKI 355 Query: 354 RMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTI 413 R+I +SF VK LL+ WR G +YF LLD DL S+ GWQ+ + D R+ +P I Sbjct: 356 RVIVSSFAVKMLLIPWRWGMKYFWDTLLDADLESDILGWQYISGCLPDGHKLERLDDPAI 415 Query: 414 QGKRFDPQGTFIRHWLPELNNVPTQYIH----APHSWLDKNDLSL--NYPLPIVDHKKA 466 G +FDP+G ++R WLPEL +P ++IH AP + L + + L NYP PI+D +A Sbjct: 416 HGAKFDPEGEYVRQWLPELARMPAEWIHHPWNAPLTVLRASGVELGQNYPKPIIDIDQA 474 >gi|167895131|ref|ZP_02482533.1| deoxyribodipyrimidine photolyase [Burkholderia pseudomallei 7894] Length = 299 Score = 202 bits (513), Expect = 1e-49, Method: Compositional matrix adjust. Identities = 114/277 (41%), Positives = 152/277 (54%), Gaps = 12/277 (4%) Query: 210 IGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVD 269 GE A LR F ++ Y +RD P I TS+LSPY+ G LS RQ W+ + + Sbjct: 27 FGEDAAHRRLRAFVDSRLGGYAVERDRPGIASTSRLSPYVRFGNLSARQLWHAAADAYAH 86 Query: 270 LLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQG 329 ++ +L+EL WREF + +P + + + + W D L AW++G Sbjct: 87 GAAT-QADLDKFLSELGWREFGWTQLHHFPDLPR-RNLRHTLDGMPWRDDPAALAAWRRG 144 Query: 330 YTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNN 389 TG+P +DA MR+L GWMHNR+RM+ ASFLVK LL+DWR GE +F L+D D ASN Sbjct: 145 ATGYPFVDAGMRELWATGWMHNRVRMVCASFLVKHLLIDWRAGEAWFWDTLVDADAASNA 204 Query: 390 GGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDK 449 WQW A G D+ PYFRIFNP QG++FDP G ++R W+PEL +P IH P W Sbjct: 205 ANWQWVAGCGADAAPYFRIFNPVAQGRKFDPDGAYVRRWVPELAGLPPATIHEP--WAAP 262 Query: 450 ND--------LSLNYPLPIVDHKKACHHTLNQYYAAK 478 L YPLPIV H A L+ + A + Sbjct: 263 GAQLAAAGVRLGETYPLPIVAHDAARRRALDAFGAIR 299 >gi|329736816|gb|EGG73081.1| deoxyribodipyrimidine photo-lyase family protein [Staphylococcus epidermidis VCU028] Length = 457 Score = 201 bits (512), Expect = 2e-49, Method: Compositional matrix adjust. Identities = 104/274 (37%), Positives = 161/274 (58%), Gaps = 10/274 (3%) Query: 208 FPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEF 267 + I E++ + +F + + Y E R+ TSQLS YL+ G++ Q +N L + + Sbjct: 187 YGISERDVQNRWSEFLSQDIENYKENREYLPEVLTSQLSIYLAYGMIDIIQVFNDLLQNY 246 Query: 268 VDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWK 327 K + +++ ELI+REFY LM YP F ++++W + + WK Sbjct: 247 D----KNEQNYETFIRELIFREFYYVLMTNYPETA-HVAFKEKYQQLKWFYNEENFKLWK 301 Query: 328 QGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLAS 387 G TGFPIIDAAM +L T G+MHNR+RM+ + FL KDL +DW GE +F +L+D D AS Sbjct: 302 DGNTGFPIIDAAMEELKTTGFMHNRMRMVVSQFLTKDLFIDWIWGESFFKQKLIDYDAAS 361 Query: 388 NNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWL 447 N GWQW+ASTG D+VPYFR+FNP Q +RFD +I+ ++P LN V +Y+H H + Sbjct: 362 NVHGWQWSASTGTDAVPYFRMFNPIRQSERFDNNARYIKTYIPRLNQVDAKYLHDTHKFE 421 Query: 448 DK-----NDLSLNYPLPIVDHKKACHHTLNQYYA 476 + ++ +YP ++DHK++ ++++ A Sbjct: 422 QQIKGQGVEIGKDYPKQMIDHKESRQRVMSEFKA 455 >gi|261876459|dbj|BAI47555.1| cryptochrome2 [Glycine max] Length = 642 Score = 201 bits (512), Expect = 2e-49, Method: Compositional matrix adjust. Identities = 149/486 (30%), Positives = 243/486 (50%), Gaps = 57/486 (11%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHF----IYASLL 66 +VW R DLRI DN AL AA + V+ V++ P++ Q R S + A L Sbjct: 7 IVWFRRDLRIEDNPALTAAA--KEGSVLPVYVWCPKEEGQF-YPGRVSRWWLKQSLAHLD 63 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQ-RVTKLFYNRQYE-INEVRRDKLLE 124 Q KSL + ++ + H + + ++ C++ + TK+ +N Y+ ++ VR + E Sbjct: 64 QSLKSLGSRLVLIKTHSTA-----VALVE--CVKAIQATKVVFNHLYDPVSLVRDHNIKE 116 Query: 125 KRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVP--AI 182 K ++ + +S++ +L P + + + + + + F K + VQ D+ S+ P I Sbjct: 117 KLVEQGISVQSYNGDLLYEPWEVNSESGRAFTTFNAFWKKCLH--VQMDIVSVVPPWQLI 174 Query: 183 RLTGPVTPSNIPRF-----FDYPFQAI-DPMFPIGEQNALHILRKFCKEKVYYYVEQRDI 236 G + ++ + P A+ + G +NA LR+F + + +Y ++R Sbjct: 175 PAEGKIEECSLEELGLENESEKPSNALLGRAWSPGWRNADRALREFVELHLLHYSKKRLK 234 Query: 237 PAIQGTSQLSPYLSIGVLSPRQCW--------------NRLKEEFVDLLIKPKSGAFSWL 282 + TS LSPYL G LS R+ + N EE +L ++ Sbjct: 235 VGGESTSLLSPYLHFGELSARKVFQVTCMKQILWTNEGNSAGEESANLFLRA-------- 286 Query: 283 NELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQ 342 + RE+ R+L +P + + + WN D + + W+QG TGFP++DA MR+ Sbjct: 287 --IGLREYSRYLCFNFP-FTHERALLGHLKFFPWNPDPDIFKTWRQGRTGFPLVDAGMRE 343 Query: 343 LNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDS 402 L GW+HNR+R+I +SF VK LL+ W+ G +YF LLD DL S+ GWQ+ + D Sbjct: 344 LWATGWIHNRIRVIVSSFAVKMLLLPWKWGMKYFWDTLLDADLESDILGWQYISGGLPDG 403 Query: 403 VPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIH----APHSWLDKNDLSL--NY 456 R+ NP IQG +FDP+G ++R WLPEL +PT++IH AP + L + L NY Sbjct: 404 HELERLDNPEIQGAKFDPEGEYVRQWLPELARMPTEWIHHPWDAPLTVLRAAGVELGQNY 463 Query: 457 PLPIVD 462 P PI+D Sbjct: 464 PKPIID 469 >gi|70606996|ref|YP_255866.1| deoxyribodipyrimidine photolyase [Sulfolobus acidocaldarius DSM 639] gi|68567644|gb|AAY80573.1| deoxyribodipyrimidine photolyase [Sulfolobus acidocaldarius DSM 639] Length = 430 Score = 201 bits (512), Expect = 2e-49, Method: Compositional matrix adjust. Identities = 149/477 (31%), Positives = 234/477 (49%), Gaps = 62/477 (12%) Query: 12 VWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISAR-QSHFIYASLLQVQK 70 V R DLR+ DN AL A ++ + K+ +FI P Q + + + F+ SL+++ K Sbjct: 5 VIFRRDLRLFDNTALVNAVYHCN-KIYPIFIVDPRQMINNPYKSEFAATFLINSLVELDK 63 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD-KLLEKRLQH 129 L+ V+ Y N ++ +++ +F N Y ++RD K+ E L Sbjct: 64 ELNGNLNVY-YGYPENIVSKLDMVNA---------IFINEDYTPFAIQRDEKMKENALNK 113 Query: 130 RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189 + S+ D +L S +++ + +TPF R L VP + Sbjct: 114 GIKFFSYPDVLL----SAEEKKIKIGRSFTPF---------YTKARELEVPKPQSVDKSI 160 Query: 190 PSNIPRF-------FDYPFQAID-PMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQG 241 N+ R F F+ ++ P+ G L +L + ++ Y ++D PA + Sbjct: 161 --NVERISNSLSIDFLLTFKKVESPLLKGGRPEGLMLLDR----EIDY--SRKDYPAEKN 212 Query: 242 TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSV 301 S LSP+L G +SPR+ +++ K AF+ +L WR+FY L+A+ Sbjct: 213 YSMLSPHLKFGTVSPREVYHK----------KISDQAFT--RQLYWRDFYT-LLAYQNPY 259 Query: 302 CMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFL 361 G F +KI+W AWK G TG+PIIDA MR LNT G+++ R+RM+ A FL Sbjct: 260 VFGHSFKTEYDKIKWENSERYFNAWKDGMTGYPIIDAGMRALNTTGFINGRVRMLVAFFL 319 Query: 362 VKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQ 421 K L VDWR+GE YF ++L+D D A NNG WQW ASTG D + FR+F+P Q +++DP+ Sbjct: 320 TKVLFVDWRLGERYFATKLVDYDPAVNNGNWQWVASTGTDYI--FRVFDPWKQQEKYDPE 377 Query: 422 GTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478 FI+ ++ EL + P IH +L K YP PIV+ ++ Y++ K Sbjct: 378 AKFIKDYVRELRDYPPSVIH--KVYLHK---ITGYPSPIVNWRERVEMVKQVYFSTK 429 >gi|29467481|dbj|BAC67179.1| cryptochrome 2 [Armoracia rusticana] Length = 617 Score = 201 bits (512), Expect = 2e-49, Method: Compositional matrix adjust. Identities = 161/496 (32%), Positives = 241/496 (48%), Gaps = 66/496 (13%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 +VW R DLRI DN AL AA H + V VFI PE+ Q ++ SL + + Sbjct: 8 IVWFRRDLRIEDNPALAAAAH--EGSVFPVFIWCPEEEGQFYPGRASRWWMKQSLAHLSQ 65 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQ-QRVTKLFYNRQYE-INEVRRDKLLEKRLQ 128 SL G + N +I LD C++ TK+ ++ Y+ ++ VR + EK ++ Sbjct: 66 SLKALGSELTLIKTHNTVSAI--LD--CIRVTGATKVVFDHLYDPVSLVRDHTVKEKLVE 121 Query: 129 HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188 + +SF+ +L P I + + +++ + K + +++ + LP P RL P+ Sbjct: 122 LGISVQSFNGDLLYEPWEIYCEKGKHFTIFSSYWKKCLDMSIESVM--LP-PPWRLR-PI 177 Query: 189 TPS------------NIPRFFDYPFQAI-DPMFPIGEQNALHILRKFCKEKVYYYVEQRD 235 T + + + P A+ + G NA IL +F +++ YY + Sbjct: 178 TAAADAVWACSIEELGLENDAEKPSNALLTRAWSPGWSNADKILNEFIDKQLIYYAKNSK 237 Query: 236 IPAIQGTSQLSPYLSIGVLSPR---QC-------WNRLK----EEFVDLLIKPKSGAFSW 281 TS LSPYL G +S R QC W R K EE DL +K Sbjct: 238 KVVGNSTSLLSPYLHYGEISVRRVFQCARMKQIIWARDKNSEGEESTDLFLKG------- 290 Query: 282 LNELIWREFYRHLMAFYP-----SVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPII 336 + RE+ R++ +P S+ F PW + D +AW+QG TG+P++ Sbjct: 291 ---IGLREYSRYICFNFPFTHEQSLLSHLRFFPW------DTDVDKFKAWRQGRTGYPLV 341 Query: 337 DAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAA 396 DA MR+L GWMHNR+R+I +SF VK LL+ W+ G +YF LLD DL + GWQ+ + Sbjct: 342 DAGMRELWATGWMHNRIRVIVSSFAVKFLLLPWKWGMKYFWDTLLDADLECDILGWQYIS 401 Query: 397 STGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIH----APHSWLDKN-- 450 + D R+ NP IQG FDP+G +IR WLPEL +PT++IH AP + L + Sbjct: 402 GSLPDGHELDRLDNPAIQGANFDPEGEYIRQWLPELVRLPTEWIHHPWDAPLTVLKASGV 461 Query: 451 DLSLNYPLPIVDHKKA 466 +L NY PIVD A Sbjct: 462 ELGTNYAKPIVDIDTA 477 >gi|311029789|ref|ZP_07707879.1| deoxyribodipyrimidine photo-lyase [Bacillus sp. m3-13] Length = 220 Score = 201 bits (512), Expect = 2e-49, Method: Compositional matrix adjust. Identities = 97/194 (50%), Positives = 123/194 (63%), Gaps = 7/194 (3%) Query: 276 SGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPI 335 +G +++ EL WR+FY + +YP K +K++WN + LL WK+G TGFPI Sbjct: 14 TGMDTFIKELAWRDFYNMIFHYYPE-SKTKEIDDKYQKLKWNDNQDLLDLWKKGKTGFPI 72 Query: 336 IDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWA 395 +DA MRQL GWMHNR+RMI ASFL KD L+DWR+GE YF L D D ASN GGWQWA Sbjct: 73 VDAGMRQLAEEGWMHNRIRMINASFLTKDFLMDWRLGERYFEQMLHDYDEASNIGGWQWA 132 Query: 396 ASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND---- 451 AS G D+VPYFR+FNP Q RFD +G +I+ +LPEL V + IH P D Sbjct: 133 ASVGTDAVPYFRVFNPITQSIRFDTKGEYIKKYLPELVGVSEKKIHEPWKMDDHEQEKAG 192 Query: 452 --LSLNYPLPIVDH 463 + +YP P+VDH Sbjct: 193 CVIGKDYPRPVVDH 206 >gi|89069099|ref|ZP_01156472.1| deoxyribodipyrimidine photolyase [Oceanicola granulosus HTCC2516] gi|89045272|gb|EAR51338.1| deoxyribodipyrimidine photolyase [Oceanicola granulosus HTCC2516] Length = 478 Score = 201 bits (510), Expect = 3e-49, Method: Compositional matrix adjust. Identities = 145/487 (29%), Positives = 222/487 (45%), Gaps = 39/487 (8%) Query: 6 AMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASL 65 A LVW+R +LR+ D+ AL A V+ VF+ E G +A+ + + Sbjct: 2 AAEAILVWVRRELRLGDHPALAEAAATGR-PVVPVFLCD-ETVEARGAAAQWRLGLGVAA 59 Query: 66 LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125 + + +V + + L + + +++++R +E ++ + Sbjct: 60 FAEALAGAGSRLVLRRGGAAAA------LVALAREAEAGEVWWSRAHEPVAAALERDVAG 113 Query: 126 RLQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL 184 L I ++F+ VL PP S+ YKVYTPF K++ V L P RL Sbjct: 114 ALAAEGIGTRAFEGHVLFPPESVATKTGGYYKVYTPFWKSVRDRDVGTPL----PPPKRL 169 Query: 185 TGPVTPSNIPRFFDYPFQA--------IDPMFPIGEQNALHILRKFCKEKVYYYVEQRDI 236 T P R + A + +GE A L +F +E++ Y + R+ Sbjct: 170 TAPGRWPESERLEAWGLGAEMRRGADVVAEHVVVGEAAAARRLERFVEERLADYPQARNR 229 Query: 237 PAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKS--GAFSWLNELIWREFYRHL 294 ++GTS LS L++G +S R CW L+ + GA ++L E+ WR+F HL Sbjct: 230 FDVEGTSGLSENLAVGEISARSCWQ------AGLMARDAGNPGAETFLKEVAWRDFAYHL 283 Query: 295 MAFYPSVCMGKPFIPWTEKIEWNKDSHLLQ--AWKQGYTGFPIIDAAMRQLNTIGWMHNR 352 + P + W WN D + AW++G TG ++DAAMR++ G MHNR Sbjct: 284 LHHTPRLATDNWRPEWA-AFPWNTDEDAPEVVAWQRGRTGVALVDAAMREMYVTGRMHNR 342 Query: 353 LRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPT 412 RMI S+L K LL WRIG+ +F + L D D A+N GWQW A +G D+ P+FR+FNP Sbjct: 343 GRMIVGSYLTKHLLSHWRIGQRWFDAHLTDWDPANNALGWQWVAGSGPDASPFFRVFNPD 402 Query: 413 IQGKRFDPQGTFIRHWLPELNNVPTQYIHA-----PHSWLDKNDLSLNYPLPIVDHKKAC 467 Q ++FDP G + R W+ E + P A P W D YP P+V + Sbjct: 403 GQAEKFDPDGAYRRKWVAEGQDDPPATALAYFAAIPRKWSMSADDP--YPQPVVGLAEGR 460 Query: 468 HHTLNQY 474 L Y Sbjct: 461 ARALAAY 467 >gi|323441460|gb|EGA99114.1| hypothetical protein SAO46_2584 [Staphylococcus aureus O46] Length = 457 Score = 200 bits (509), Expect = 4e-49, Method: Compositional matrix adjust. Identities = 125/341 (36%), Positives = 181/341 (53%), Gaps = 18/341 (5%) Query: 142 LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPF 201 +N + YKV+T F K L D+ + + +P ++ F D F Sbjct: 129 FKASKTMNQQGEPYKVFTSFYKKWRPYLRHRDVYHYDLKSFEDFVIASPDDLV-FDDIAF 187 Query: 202 QAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWN 261 + I EQN + F + + Y RD TSQLS L+ G+L + +N Sbjct: 188 GSS----QIIEQNKW---QHFLEHDIQNYESGRDYLPEVLTSQLSIALAYGLLDIIEIFN 240 Query: 262 RLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSH 321 L + + +S +++ ELI+REFY LM YP + F P I W+++ Sbjct: 241 DLLSRYEE----DESNYEAFIRELIFREFYYVLMTQYPESA-HQSFKPKYRHINWSENEA 295 Query: 322 LLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLL 381 +AW G TGFPIIDAAM +L G+MHNR+RM+ + FL KDL ++W GE++F L+ Sbjct: 296 DFKAWCDGQTGFPIIDAAMMELRQTGFMHNRMRMVVSQFLTKDLFINWTWGEDFFRKYLI 355 Query: 382 DGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIH 441 D D ASN GWQW+ASTG D+VPYFR+FNP Q +RFDP+ +I+ +LP LN + +Y+H Sbjct: 356 DYDAASNVHGWQWSASTGTDAVPYFRMFNPIRQSERFDPKALYIKTYLPVLNQIDAKYLH 415 Query: 442 APH---SWLDKNDLSL--NYPLPIVDHKKACHHTLNQYYAA 477 H S L K + L +YP IVDH++ L + A+ Sbjct: 416 DTHRNESELFKQGIELGRHYPKQIVDHQEKRSQVLATFKAS 456 >gi|261876461|dbj|BAI47556.1| cryptochrome2 [Glycine max] Length = 634 Score = 200 bits (509), Expect = 4e-49, Method: Compositional matrix adjust. Identities = 148/486 (30%), Positives = 243/486 (50%), Gaps = 57/486 (11%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHF----IYASLL 66 +VW R DLRI DN AL AA + V+ V++ P++ Q R S + A L Sbjct: 7 IVWFRRDLRIEDNPALAAAA--KEGSVLPVYVWCPKEEGQF-YPGRVSRWWLKQSLAHLD 63 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQ-RVTKLFYNRQYE-INEVRRDKLLE 124 Q KSL + ++ + H + + ++ C++ + TK+ +N Y+ ++ VR + E Sbjct: 64 QSLKSLGSRLVLIKTHSTA-----VALVE--CVKAIQATKVVFNHLYDPVSLVRDHNIKE 116 Query: 125 KRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVP--AI 182 K ++ + +S++ +L P + + + + + + F K + +Q D+ S+ P I Sbjct: 117 KLVEQGISVQSYNGDLLYEPWEVNSESGRAFTTFNAFWKKCLH--MQMDIVSVVPPWQLI 174 Query: 183 RLTGPVTPSNIPRF-----FDYPFQAI-DPMFPIGEQNALHILRKFCKEKVYYYVEQRDI 236 G + ++ + P A+ + G +NA LR+F + + +Y ++R Sbjct: 175 PAEGKIEECSLEELGLENESEKPSNALLGRAWSPGWRNADKALREFVELHLLHYSKKRLK 234 Query: 237 PAIQGTSQLSPYLSIGVLSPRQCW--------------NRLKEEFVDLLIKPKSGAFSWL 282 + TS LSPYL G LS R+ + N EE +L ++ Sbjct: 235 VGGESTSLLSPYLHFGELSARKVFQVTCMKQILWTNEGNSAGEESANLFLRA-------- 286 Query: 283 NELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQ 342 + RE+ R+L +P + + + WN D + + W+QG TGFP++DA MR+ Sbjct: 287 --IGLREYSRYLCFNFP-FTHERALLGHLKFFPWNPDPDIFKTWRQGRTGFPLVDAGMRE 343 Query: 343 LNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDS 402 L GW+HNR+R+I +SF VK LL+ W+ G +YF LLD DL S+ GWQ+ + D Sbjct: 344 LWATGWIHNRIRVIVSSFAVKMLLLPWKWGMKYFWDTLLDADLESDILGWQYISGGLPDG 403 Query: 403 VPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIH----APHSWLDKNDLSL--NY 456 R+ NP IQG +FDP+G ++R WLPEL +PT++IH AP + L + L NY Sbjct: 404 HELERLDNPEIQGAKFDPEGEYVRQWLPELARMPTEWIHHPWDAPLTVLRAAGVELGQNY 463 Query: 457 PLPIVD 462 P PI+D Sbjct: 464 PKPIID 469 >gi|89199718|gb|ABD63262.1| cryptochrome 2 [Glycine max] Length = 634 Score = 200 bits (509), Expect = 4e-49, Method: Compositional matrix adjust. Identities = 148/486 (30%), Positives = 243/486 (50%), Gaps = 57/486 (11%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHF----IYASLL 66 +VW R DLRI DN AL AA + V+ V++ P++ Q R S + A L Sbjct: 7 IVWFRRDLRIEDNPALTAAA--KEGSVLPVYVWCPKEEGQF-YPGRVSRWWLKQSLAHLD 63 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQ-RVTKLFYNRQYE-INEVRRDKLLE 124 Q KSL + ++ + H + + ++ C++ + TK+ +N Y+ ++ VR + E Sbjct: 64 QSLKSLGSRLVLIKTHSTA-----VALVE--CVKAIQATKVVFNHLYDPVSLVRDHNIKE 116 Query: 125 KRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVP--AI 182 K ++ + +S++ +L P + + + + + + F K + +Q D+ S+ P I Sbjct: 117 KLVEQGISVQSYNGDLLYEPWEVNSESGRAFTTFNAFWKKCLH--MQMDIVSVVPPWQLI 174 Query: 183 RLTGPVTPSNIPRF-----FDYPFQAI-DPMFPIGEQNALHILRKFCKEKVYYYVEQRDI 236 G + ++ + P A+ + G +NA LR+F + + +Y ++R Sbjct: 175 PAEGKIEECSLEELGLENESEKPSNALLGRAWSPGWRNADKALREFVELHLLHYSKKRLK 234 Query: 237 PAIQGTSQLSPYLSIGVLSPRQCW--------------NRLKEEFVDLLIKPKSGAFSWL 282 + TS LSPYL G LS R+ + N EE +L ++ Sbjct: 235 VGGESTSLLSPYLHFGELSARKVFQVTCMKQILWTNEGNSAGEESANLFLRA-------- 286 Query: 283 NELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQ 342 + RE+ R+L +P + + + WN D + + W+QG TGFP++DA MR+ Sbjct: 287 --IGLREYSRYLCFNFP-FTHERALLGHLKFFPWNPDPDIFKTWRQGRTGFPLVDAGMRE 343 Query: 343 LNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDS 402 L GW+HNR+R+I +SF VK LL+ W+ G +YF LLD DL S+ GWQ+ + D Sbjct: 344 LWATGWIHNRIRVIVSSFAVKMLLLPWKWGMKYFWDTLLDADLESDILGWQYISGGLPDG 403 Query: 403 VPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIH----APHSWLDKNDLSL--NY 456 R+ NP IQG +FDP+G ++R WLPEL +PT++IH AP + L + L NY Sbjct: 404 HELERLDNPEIQGAKFDPEGEYVRQWLPELARMPTEWIHHPWDAPLTVLRAAGVELGQNY 463 Query: 457 PLPIVD 462 P PI+D Sbjct: 464 PKPIID 469 >gi|261876465|dbj|BAI47558.1| cryptochrome2 [Glycine max] Length = 634 Score = 200 bits (509), Expect = 4e-49, Method: Compositional matrix adjust. Identities = 151/486 (31%), Positives = 240/486 (49%), Gaps = 57/486 (11%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHF----IYASLL 66 +VW R DLRI DN AL AA + V+ V+I P++ Q R S + A L Sbjct: 7 IVWFRRDLRIEDNPALAAAAK--EGSVLPVYIWCPKEEGQF-YPGRVSRWWLKQSLAHLD 63 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQ-RVTKLFYNRQYE-INEVRRDKLLE 124 Q KSL + ++ + H S +E C++ + TK+ +N Y+ ++ VR + E Sbjct: 64 QSLKSLGSRLVLIKTH--STVTALVE-----CVKAIQATKVVFNHLYDPVSLVRDHNIKE 116 Query: 125 KRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRS-------L 177 K ++ + +S++ +L P + + + + + + F K + +Q D+ S + Sbjct: 117 KLVEQGISVQSYNGDLLYEPWEVYSESGRAFTTFNAFWKKCLH--MQMDIVSVVPPWQLI 174 Query: 178 PVPAIRLTGPVTPSNIPRFFDYPFQAI-DPMFPIGEQNALHILRKFCKEKVYYYVEQRDI 236 P P+ + + P A+ + G +NA L +F ++ + Y ++R Sbjct: 175 PAEGKVEECPLEELGLENESEKPSNALLGRAWSPGWRNADKALTEFVEQHLLDYSKKRLK 234 Query: 237 PAIQGTSQLSPYLSIGVLSPRQCW--------------NRLKEEFVDLLIKPKSGAFSWL 282 TS LSPYL G LS R+ + N EE V+L ++ Sbjct: 235 VGGDSTSLLSPYLHFGELSVRKVFQVTRMKQILWTNEGNSAGEESVNLFLRA-------- 286 Query: 283 NELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQ 342 + RE+ R+L +P K + + WN D+ + + W+QG TGFP++DA MR+ Sbjct: 287 --IGLREYSRYLCFNFP-FTHEKALLGHLKFFPWNPDADIFKNWRQGRTGFPLVDAGMRE 343 Query: 343 LNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDS 402 L GW+HNR+R+I +SF VK LL+ W+ G +YF LLD DL S+ GWQ+ + D Sbjct: 344 LWATGWIHNRIRVIVSSFAVKMLLLPWKWGMKYFWDTLLDADLESDILGWQYISGGLPDG 403 Query: 403 VPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIH----APHSWLDKNDLSL--NY 456 R+ NP IQG +FDP+G ++R WLPEL +PT++IH AP + L + L NY Sbjct: 404 HEPERLDNPEIQGVKFDPEGEYVRQWLPELARMPTEWIHHPWDAPLTVLRAAGVELGQNY 463 Query: 457 PLPIVD 462 P PI+D Sbjct: 464 PKPIID 469 >gi|283469986|emb|CAQ49197.1| FAD binding domain of DNA photolyase protein [Staphylococcus aureus subsp. aureus ST398] Length = 457 Score = 200 bits (509), Expect = 4e-49, Method: Compositional matrix adjust. Identities = 142/471 (30%), Positives = 229/471 (48%), Gaps = 29/471 (6%) Query: 14 LRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQKSLS 73 L N + ++ L+ + + A + PE+ S ++ F +L + +SL Sbjct: 6 LLNRMFRMEHNPLFEYIYQQKEDIDACYFIIPEE-DMSSASDLKAQFYRGTLQRFYQSLH 64 Query: 74 QKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL---QHR 130 + + ++DD I S+C + ++++ + +L +R + R Sbjct: 65 AEKLT---PYVMSYDDII----SFCKENNISEVVIAGDIMSYHLEEYDILHQRSLFNEAR 117 Query: 131 VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTP 190 + + +N + YKV+T F K L D+ + + +P Sbjct: 118 IAVTLIRGNHYFKASKTMNQQGEPYKVFTSFYKKWRPYLRHRDVYHYDLKSFEDFVIASP 177 Query: 191 SNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLS 250 ++ F D F + I EQN + F + + Y RD TSQLS L+ Sbjct: 178 DDLV-FDDIAFGSS----QIIEQNKW---QHFLDQDIQNYESGRDYLPEVLTSQLSVALA 229 Query: 251 IGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPW 310 G+L + +N L + + ++ +++ ELI+REFY LM YP + F P Sbjct: 230 YGLLDIIEIFNDLLARYDE----DEANYEAFIRELIFREFYYVLMTQYPETSY-QAFKPK 284 Query: 311 TEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWR 370 +I+W+++ AW +G TGFPIIDAA+ +L G+MHNR+RM+ + FL KDL +DW Sbjct: 285 YRQIKWSQNEADFNAWCEGQTGFPIIDAAIMELTQTGFMHNRMRMVVSQFLTKDLFIDWT 344 Query: 371 IGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLP 430 GE++F L+D D ASN GWQW+ASTG D+VPYFR+FNP Q +RFDP+ +I+ +LP Sbjct: 345 WGEKFFRKHLIDYDAASNIHGWQWSASTGTDAVPYFRMFNPIRQSERFDPKALYIKTYLP 404 Query: 431 ELNNVPTQYIHAPH---SWLDKNDLSL--NYPLPIVDHKKACHHTLNQYYA 476 N + +Y+H H S L K + L +YP IVDH++ L + A Sbjct: 405 IFNQIDAKYLHDTHRNESELFKQGIELGRHYPKQIVDHQEKRSQVLATFKA 455 >gi|323438580|gb|EGA96326.1| hypothetical protein SAO11_2569 [Staphylococcus aureus O11] Length = 457 Score = 200 bits (509), Expect = 4e-49, Method: Compositional matrix adjust. Identities = 125/340 (36%), Positives = 180/340 (52%), Gaps = 18/340 (5%) Query: 142 LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPF 201 +N + YKV+T F K L D+ + + +P ++ F D F Sbjct: 129 FKASKTMNQQGEPYKVFTSFYKKWRPYLRHRDVYHYDLKSFEDFVIASPDDLV-FDDIAF 187 Query: 202 QAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWN 261 + I EQN + F + + Y RD TSQLS L+ G+L + +N Sbjct: 188 GSS----QIIEQNKW---QHFLEHDIQNYESGRDYLPEVLTSQLSIALAYGLLDIIEIFN 240 Query: 262 RLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSH 321 L + + +S +++ ELI+REFY LM YP + F P I W+++ Sbjct: 241 DLLSRYEE----DESNYEAFIRELIFREFYYVLMTQYPESA-HQSFKPKYRHINWSENEA 295 Query: 322 LLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLL 381 +AW G TGFPIIDAAM +L G+MHNR+RM+ + FL KDL ++W GE++F L+ Sbjct: 296 DFKAWCDGQTGFPIIDAAMMELRQTGFMHNRMRMVVSQFLTKDLFINWTWGEDFFRKYLI 355 Query: 382 DGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIH 441 D D ASN GWQW+ASTG D+VPYFR+FNP Q +RFDP+ +I+ +LP LN + +Y+H Sbjct: 356 DYDAASNVHGWQWSASTGTDAVPYFRMFNPIRQSERFDPKALYIKTYLPVLNQIDAKYLH 415 Query: 442 APH---SWLDKNDLSL--NYPLPIVDHKKACHHTLNQYYA 476 H S L K + L +YP IVDH++ L + A Sbjct: 416 DTHRNESELFKQGIELGRHYPKQIVDHQEKRSQVLATFKA 455 >gi|3551219|dbj|BAA32808.1| blue-light photoreceptor [Adiantum capillus-veneris] gi|3551225|dbj|BAA32811.1| blue-light photoreceptor [Adiantum capillus-veneris] Length = 679 Score = 200 bits (509), Expect = 4e-49, Method: Compositional matrix adjust. Identities = 151/489 (30%), Positives = 235/489 (48%), Gaps = 34/489 (6%) Query: 1 MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHF 60 M A T ++ +VW R DLRI DN AL AA V+ VFI +PE+ Q + Sbjct: 1 MAAHTIVAHTIVWFRRDLRIEDNPALVAAVRA--GPVLPVFIWSPEEEGQFLPGRVSRWW 58 Query: 61 IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120 + SL+ + +SL+ G + SN + L T++FYN Y+ + RD Sbjct: 59 LKQSLVHLNESLTILGAPLVMRRASNV---LAALLEIKKATGATQVFYNHLYDPVSLVRD 115 Query: 121 KLLEKRL-QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPV 179 +++ L Q +I SF+ +L P + + Q + ++ F + + + + LP Sbjct: 116 HRVKQGLSQAGIIVNSFNADLLYEPWEVNDDNGQAFTTFSGFWAKCMDMPAEPEAQILPP 175 Query: 180 PAI-RLTGPVTPSNIPRFFDYPFQA------IDPMFPIGEQNALHILRKFCKEKVYYYVE 232 I + GP +I + + G NA L F + Y Sbjct: 176 KRILKFPGPSLSCSIEDLDLEDELEKGSNALLARAWQPGWANADRALESFINGSLMEYAA 235 Query: 233 QRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFV----DLLIKPKSGAFSWLNELIWR 288 R TS LSP+L G +S R+ ++ ++ + V + ++ + +L + +R Sbjct: 236 NRQKVDSATTSLLSPHLHYGEVSVRKIFHNVRMKQVLWVKEGRVEAEESVNLFLRSIGFR 295 Query: 289 EFYRHLMAFYP-----SVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQL 343 E+ R+L +P S+ F PW D +AW+QG TG+P++DA MR+L Sbjct: 296 EYSRYLSFNFPFTHERSLLYNLKFFPW------RVDESYFKAWRQGRTGYPLVDAGMREL 349 Query: 344 NTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSV 403 GW+HN++R+I +SF VK L + WR G +YF LLD DL S+ GWQ+ + + D Sbjct: 350 WATGWLHNQIRVIVSSFCVKFLQLPWRWGMKYFWDTLLDADLESDVLGWQYISGSLPDGH 409 Query: 404 PYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIH----APHSWLDKNDLSL--NYP 457 RI NP I+G +FDP G ++R WLPEL+ +PT++IH AP S L + L NYP Sbjct: 410 ELDRIDNPQIEGYKFDPYGEYVRRWLPELSRLPTEWIHHPWDAPPSVLRAAGIELGSNYP 469 Query: 458 LPIVDHKKA 466 PIV+ A Sbjct: 470 RPIVEIAAA 478 >gi|224084664|ref|XP_002307379.1| predicted protein [Populus trichocarpa] gi|222856828|gb|EEE94375.1| predicted protein [Populus trichocarpa] Length = 680 Score = 200 bits (508), Expect = 5e-49, Method: Compositional matrix adjust. Identities = 152/485 (31%), Positives = 225/485 (46%), Gaps = 46/485 (9%) Query: 5 TAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHF-IYA 63 + +VW R DLR+ DN AL A V+AVF+ PE+ H R S + + Sbjct: 2 SGGGCSIVWFRRDLRVEDNPALAAGVRA--GAVVAVFVWAPEE-EGHYYPGRVSRWWLKQ 58 Query: 64 SLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYE-INEVRRDKL 122 SL + SL G + + DS+ L T+L +N Y+ ++ VR + Sbjct: 59 SLAHLDSSLRSLGTSLVTKRST---DSVSSLLEVVKSTGATQLLFNHLYDPLSLVRDHRA 115 Query: 123 LEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAI 182 E + +SF+ +L P + + + + + F + + + LP P Sbjct: 116 KEILTAQGITVRSFNADLLYEPWDVNDAQGRPFTTFDTFWERCLSMPFDPEAPLLP-PKR 174 Query: 183 RLTGPVT--PSNIPRFFDYPFQAIDPMFP----IGEQNALHILRKFCKEKVYYYVEQRDI 236 ++G V+ PS F D + + + G NA L F + Y R Sbjct: 175 IISGDVSRCPSVTLVFEDESEKGSNALLARAWSPGWSNADRALTTFINGPLIEYSMNRRK 234 Query: 237 PAIQGTSQLSPYLSIGVLSPRQCW--------------NRLKEEFVDLLIKPKSGAFSWL 282 TS LSP+L G +S R+ + NR EE V+L IK Sbjct: 235 ADSATTSFLSPHLHFGEVSVRKVFHLVRIKQVLWANEGNRAGEESVNLFIK--------- 285 Query: 283 NELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQ 342 + RE+ R+L +P +P + + W D +AW+QG TG+P++DA MR+ Sbjct: 286 -SIGLREYSRYLSFNHP-CTHERPLLGHLKFFPWVVDEGYFKAWRQGRTGYPLVDAGMRE 343 Query: 343 LNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDS 402 L GW+H+R+R++ ASF VK L + WR G +YF LLD DL S+ GWQ+ T DS Sbjct: 344 LWAAGWLHDRIRVVVASFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYITGTLPDS 403 Query: 403 VPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIH----APHSWLDKNDLSL--NY 456 + RI NP +G +FDP G ++R WLPEL +PT++IH AP S L + L NY Sbjct: 404 REFDRIDNPQFEGYKFDPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNY 463 Query: 457 PLPIV 461 PLPIV Sbjct: 464 PLPIV 468 >gi|297563254|ref|YP_003682228.1| deoxyribodipyrimidine photo-lyase [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] gi|296847702|gb|ADH69722.1| Deoxyribodipyrimidine photo-lyase [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] Length = 435 Score = 200 bits (508), Expect = 5e-49, Method: Compositional matrix adjust. Identities = 121/335 (36%), Positives = 177/335 (52%), Gaps = 23/335 (6%) Query: 131 VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP--V 188 + ++F ++PPG + YKV+TP+ KA A R P R+ P V Sbjct: 116 LTVRAFPGLTVVPPGEVTPAGGDHYKVFTPYWKAW----EAAAWRDPVAPPDRVVLPEGV 171 Query: 189 TPSNIPRFFDYPFQAIDPMFP-IGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSP 247 P +P A+ P GE+ A L + + Y ++ D TS LS Sbjct: 172 RPGELPGRGTDGLGALAEDLPRGGERAARERLDAWLSSGLAAYPDRHDDLPGAATSHLSA 231 Query: 248 YLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPF 307 L +G LSP + L P +G +++ +L WR+F+ + A +P+V + + + Sbjct: 232 DLRLGCLSPLEA---------ALAASPLAGGEAFVRQLAWRDFHHQVTAAFPAVNV-RDY 281 Query: 308 IPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLV 367 P K W +D L AWK+G TG P++DA MRQL G++HNR RMITA+FL + L V Sbjct: 282 RPRDRK--WREDPDALDAWKRGRTGVPVVDAGMRQLLREGFVHNRARMITAAFLTRTLRV 339 Query: 368 DWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRH 427 WR G ++F + L+DGD+A+N G WQW A TGND+ P R FNP Q +RFDP+G ++R Sbjct: 340 HWREGADHFHAHLVDGDVANNYGNWQWVAGTGNDTRPN-RAFNPLRQARRFDPEGVYVRR 398 Query: 428 WLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVD 462 +LPEL ++P H P W +++ YP PI D Sbjct: 399 YLPELADLPGGRAHTP--WREEHP-PPGYPAPIAD 430 >gi|126461586|ref|YP_001042700.1| deoxyribodipyrimidine photo-lyase [Rhodobacter sphaeroides ATCC 17029] gi|126103250|gb|ABN75928.1| Deoxyribodipyrimidine photo-lyase type I [Rhodobacter sphaeroides ATCC 17029] Length = 471 Score = 199 bits (507), Expect = 6e-49, Method: Compositional matrix adjust. Identities = 144/478 (30%), Positives = 216/478 (45%), Gaps = 33/478 (6%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 ++W R DLR+ DN L A +I +FI PE + + Q + Sbjct: 8 ILWFRRDLRLADNPMLAEAAATGR-PLIPLFILDPETEALGAAPKWRLGLGVEAFAQALE 66 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130 L + ++ + ++ L + + + ++R +E + RD+ + L+ Sbjct: 67 GLGSRLVLRR-------GPALAVLKTLVAETGAAGVHWSRLWEPDWRARDEGVTAGLRQA 119 Query: 131 VI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP-- 187 I + P + Y+VYTPF KA+ V A S P PA RL P Sbjct: 120 GIEAARHAGHTIFEPREVETGQGGFYRVYTPFWKAVKDRPVAA---SFPPPA-RLPSPAE 175 Query: 188 ------VTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQG 241 + ++ R + + P +GE A L +F + Y +RD P Sbjct: 176 WPVSERLASWDLGRAMNRGAAVVAPHLAVGEAAAAERLARFLSGPLDRYAAERDRPDAPV 235 Query: 242 TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSV 301 TS+LS L+ G +S R W+ + + ++GA +L EL WREF HL+ P + Sbjct: 236 TSRLSENLTYGEISARSLWH----AGMRARAEGRAGAEKFLQELAWREFGWHLLYHTPEI 291 Query: 302 CMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFL 361 W + W D+ + W++G TG P +DAAMR+L G MHNR R+I S+L Sbjct: 292 ARRNWRGDW-DAFPWRGDNPDAERWRRGMTGEPFVDAAMRELFVTGTMHNRARLIAGSYL 350 Query: 362 VKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQ 421 K LL DWR+G+ +F L+D D ASN GWQW A +G D+ PYFRIFNP Q ++FDP+ Sbjct: 351 TKHLLTDWRVGKAWFEDCLIDWDPASNALGWQWVAGSGPDASPYFRIFNPATQAEKFDPE 410 Query: 422 GTFIRHWLPELNNVPTQYIHA-----PHSWLDKNDLSLNYPLPIVDHKKACHHTLNQY 474 + R +L E+ P A P SW + D YP P+V + L Y Sbjct: 411 SAYRRRFLAEIARRPGPEALAFFEAVPRSWGLRPDRC--YPRPVVGLAEGRERALAAY 466 >gi|297848668|ref|XP_002892215.1| hypothetical protein ARALYDRAFT_470417 [Arabidopsis lyrata subsp. lyrata] gi|297338057|gb|EFH68474.1| hypothetical protein ARALYDRAFT_470417 [Arabidopsis lyrata subsp. lyrata] Length = 612 Score = 199 bits (507), Expect = 6e-49, Method: Compositional matrix adjust. Identities = 154/492 (31%), Positives = 240/492 (48%), Gaps = 58/492 (11%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 +VW R DLRI DN AL AA H + V VFI PE+ Q ++ SL + + Sbjct: 8 IVWFRRDLRIEDNPALAAAAH--EGSVFPVFIWCPEEEGQFYPGRASRWWMKQSLAHLSQ 65 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQ-QRVTKLFYNRQYEINEVRRDKLLEKRLQH 129 SL G + + N +I LD C++ TK+ +N Y+ + RD ++++L Sbjct: 66 SLKALGSDLTFIKTHNTVSAI--LD--CIRVTGATKVVFNHLYDPVSLVRDHTVKEKLVE 121 Query: 130 RVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADL-----RSLPVPAIR 183 R I +S++ +L P I + + ++ + K + +++ + R +P+ A Sbjct: 122 RGISVQSYNGDLLYEPWEIYCEKGKPFTSFSSYWKKCLDMPIESVMLPPPWRLMPITAAA 181 Query: 184 ---LTGPVTPSNIPRFFDYPFQAI-DPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAI 239 + + + P A+ + G NA IL +F ++++ Y + Sbjct: 182 EAVWACSIEELGLENEAEKPSNALLTRAWSPGWSNADKILNEFIEKQLIDYAKNSKKVVG 241 Query: 240 QGTSQLSPYLSIGVLSPR---QC-------WNRLK----EEFVDLLIKPKSGAFSWLNEL 285 TS LSPYL G +S R QC W R K EE DL ++ + Sbjct: 242 NSTSLLSPYLHFGEISVRHVFQCARMKQIIWARDKNSEGEESADLFLRG----------I 291 Query: 286 IWREFYRHLMAFYP-----SVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAM 340 RE+ R++ +P S+ F PW + D +AW+QG TG+P++DA M Sbjct: 292 GLREYSRYICFNFPFTHEQSLLSHLRFFPW------DADVDKFKAWRQGRTGYPLVDAGM 345 Query: 341 RQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGN 400 R+L GWMHNR+R+I +SF VK LL+ W+ G +YF LLD DL + GWQ+ + + Sbjct: 346 RELWATGWMHNRIRVIVSSFAVKFLLLPWKWGMKYFWDTLLDADLECDILGWQYISGSIP 405 Query: 401 DSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIH----APHSWLDKN--DLSL 454 D R+ NP +QG ++DP+G +IR WLPEL +PT++IH AP + L + +L Sbjct: 406 DGHELDRLDNPALQGAKYDPEGEYIRQWLPELARLPTEWIHHPWDAPLTVLKASGVELGT 465 Query: 455 NYPLPIVDHKKA 466 NY PIVD + A Sbjct: 466 NYAKPIVDIETA 477 >gi|304650441|gb|ADM47404.1| cryptochrome 2 [Brassica juncea] Length = 619 Score = 199 bits (507), Expect = 6e-49, Method: Compositional matrix adjust. Identities = 154/478 (32%), Positives = 236/478 (49%), Gaps = 39/478 (8%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 +VW R DLRI DN AL AA H + V VFI PE+ Q ++ SL + + Sbjct: 8 IVWFRRDLRIEDNPALAAAAH--EGSVFPVFIWCPEEEGQFYPGRASRWWMKQSLAHLTQ 65 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQR-VTKLFYNRQYEINEVRRDKLLEKRLQH 129 SL G + N +I LD C++ TK+ +N Y+ + RD ++++L Sbjct: 66 SLKALGSELTLIKTHNTVSAI--LD--CVRATGATKVVFNHLYDPVSLVRDHTVKEKLVE 121 Query: 130 RVIC-KSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188 R I +S++ +L P I + + + + K + V++ + P I LT Sbjct: 122 RGIAVQSYNGDLLYEPWEIYCEKGKPFTNFNSYWKKCLDMSVESVVLPPPWRLIPLTAAE 181 Query: 189 T-------PSNIPRFFDYPFQAI-DPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ 240 T + + P A+ + G NA IL +F ++++ Y + Sbjct: 182 TVWACSLEELGLENEAEKPSNALLTRAWSPGWSNADKILTEFIEKQLIDYAKNSKKVVGN 241 Query: 241 GTSQLSPYLSIGVLSPR---QCWNRLKEEF--VDLLIKPKSGAFSWLNELIWREFYRHLM 295 TS LSPYL G +S R QC R+K+ D + + A +L + R++ R++ Sbjct: 242 STSLLSPYLHFGEISVRRVFQC-ARMKQIIWARDKNGQGEESAVLFLRGIGLRDYSRYIC 300 Query: 296 AFYP-----SVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMH 350 +P S+ F PW + D +AW+QG TG+P++DA MR+L GWMH Sbjct: 301 FNFPFTHEQSLLSHLRFFPW------DADVEKFKAWRQGRTGYPLVDAGMRELWATGWMH 354 Query: 351 NRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFN 410 NR+R+I +SF VK LL+ W+ G +YF LLD DL + GWQ+ + + D R+ N Sbjct: 355 NRIRVIVSSFAVKFLLLPWKWGMKYFWDTLLDADLECDIIGWQYISGSLPDGHELDRLDN 414 Query: 411 PTIQGKRFDPQGTFIRHWLPELNNVPTQYIH----APHSWLDKN--DLSLNYPLPIVD 462 P IQG ++DP+G +IR WLPEL +PT++IH AP + L + +L NY PIVD Sbjct: 415 PAIQGAKYDPEGEYIRQWLPELARLPTEWIHHPWDAPLTVLKASGVELGTNYAKPIVD 472 >gi|37725011|gb|AAO23972.1| cryptochrome 2B [Pisum sativum] Length = 597 Score = 199 bits (507), Expect = 7e-49, Method: Compositional matrix adjust. Identities = 139/474 (29%), Positives = 232/474 (48%), Gaps = 23/474 (4%) Query: 6 AMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASL 65 M+ +VW R DLRI DN AL AA D V VFI P++ Q ++ SL Sbjct: 2 GMNRTIVWFRRDLRIEDNPALAAAAR--DGSVFPVFIWCPKEEGQFYPGRVSRWWMKQSL 59 Query: 66 LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYE-INEVRRDKLLE 124 + + +SL G + D +++ L + TK+ +N Y+ ++ VR + E Sbjct: 60 VHLDQSLKSLGAGLVIIKT---DSTLKALLECVNAVQATKVVFNHLYDPVSLVRDHNIKE 116 Query: 125 KRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL 184 K ++ V +S++ +L P I + + + + PF + ++ P I Sbjct: 117 KLVEQGVSVQSYNGDLLYEPWEIFDESGHAFTTFDPFWNTCLHMQMKTYSPIPPCQLILA 176 Query: 185 TGPVTPSNIPRFF------DYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPA 238 G V +I + ++ + G + L +F + + +Y R Sbjct: 177 QGKVEKHSIEQLGLEDELEKSSNSSLGRSWSPGWSKSDKALAEFIENYLLHYSGNRLNLG 236 Query: 239 IQGTSQLSPYLSIGVLSPRQCWNRLKEEFV----DLLIKPKSGAFSWLNELIWREFYRHL 294 TS LSPY+ G LS R+ + + + + + I + A +L + +RE+ R+L Sbjct: 237 GDSTSLLSPYIHFGELSVRKVFQLARTKQILWTHEGNIIGEESATLFLRAIGFREYSRYL 296 Query: 295 MAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLR 354 +P + +P + + WN D +AW+QG TG+P++DA MR+L GW+HN++R Sbjct: 297 CFSFP-FTLERPLLGNLKFFPWNNDPSNFKAWRQGRTGYPLVDAGMRELWATGWIHNKMR 355 Query: 355 MITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQ 414 +I +SF VK LL+ W+ G +YF LLD DL S+ GWQ+ + + D R+ +P + Sbjct: 356 VIVSSFAVKMLLIPWKWGMKYFWDTLLDADLESDILGWQYISGSLPDGHKLERLDDPEVL 415 Query: 415 GKRFDPQGTFIRHWLPELNNVPTQYIH----APHSWLDKNDLSL--NYPLPIVD 462 G+++DP G +IR WLPEL +P ++IH AP + L + + L NYP PI+D Sbjct: 416 GRKYDPAGEYIRQWLPELARMPAEWIHHPWDAPLTVLTASGVELGQNYPKPIID 469 >gi|27467381|ref|NP_764018.1| putative deoxyribodipyrimidine photolyase [Staphylococcus epidermidis ATCC 12228] gi|27314924|gb|AAO04060.1|AE016745_159 putative deoxyribodipyrimidine photolyase [Staphylococcus epidermidis ATCC 12228] Length = 457 Score = 199 bits (507), Expect = 7e-49, Method: Compositional matrix adjust. Identities = 103/274 (37%), Positives = 161/274 (58%), Gaps = 10/274 (3%) Query: 208 FPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEF 267 + I E++ + +F + + Y E R+ TSQLS YL+ G++ Q +N L + + Sbjct: 187 YGISERDVQNRWSEFLSQDIENYKENREYLPEVLTSQLSIYLAYGMIDIIQVFNDLLQNY 246 Query: 268 VDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWK 327 K + +++ ELI+REFY LM YP F ++++W+ + + WK Sbjct: 247 D----KNEQNYETFIRELIFREFYYVLMTNYPETAHV-AFKEKYQQLKWSYNEENFKLWK 301 Query: 328 QGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLAS 387 G TGFPIIDAAM +L T G+MHNR+RM+ + FL KDL +DW GE +F +L+D AS Sbjct: 302 DGNTGFPIIDAAMEELKTTGFMHNRMRMVVSQFLTKDLFIDWIWGESFFKQKLIDYYAAS 361 Query: 388 NNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWL 447 N GWQW+ASTG D+VPYFR+FNP Q +RFD +I+ ++P LN V +Y+H H + Sbjct: 362 NVHGWQWSASTGTDAVPYFRMFNPIRQSERFDNNARYIKTYIPRLNQVDAKYLHDTHKFE 421 Query: 448 DK-----NDLSLNYPLPIVDHKKACHHTLNQYYA 476 + ++ +YP ++DHK++ ++++ A Sbjct: 422 QQIKGQGVEIGKDYPKQMIDHKESRQRVMSEFKA 455 >gi|222478726|ref|YP_002564963.1| DNA photolyase FAD-binding [Halorubrum lacusprofundi ATCC 49239] gi|222451628|gb|ACM55893.1| DNA photolyase FAD-binding [Halorubrum lacusprofundi ATCC 49239] Length = 465 Score = 199 bits (507), Expect = 7e-49, Method: Compositional matrix adjust. Identities = 144/471 (30%), Positives = 216/471 (45%), Gaps = 34/471 (7%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 + L W R D R DN L AA V+ VF+ + + G ARQ F L+ Sbjct: 1 MQLFWHRRDPRTRDNVGLAAAART--GTVVPVFVYDTDLFGTMG--ARQRAF----FLRH 52 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128 K L ++ F D + L + +FYN Y R + +E L+ Sbjct: 53 VKRLKERYREFGSDLVVRAGDPEKVLVDLADEYDAEAVFYNEYYRPARRNRQRAVEGALE 112 Query: 129 H-RVICKSFDDSVLLPPGSI----LNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIR 183 V + D+VL+ PG + NH + + + K AD + +R Sbjct: 113 GFGVETNARTDAVLVDPGRLEERYANHG-RFHDEWETVPKPEPSPEPDADA----LVNMR 167 Query: 184 LTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPA----- 238 V+ + D A G + A F + + Y + RD A Sbjct: 168 DEKTVSEIDPDIDPDIDLPAT------GYRAARERFDGFLEHGIRSYADTRDDLARAVEA 221 Query: 239 -IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAF 297 S++SPYL+ G + R+ W + F + + +EL WRE HL+ + Sbjct: 222 PTHAVSRMSPYLATGAIGIREMWADATDAFEAATGDERRNVDKYRDELSWREQMYHLLYY 281 Query: 298 YPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMIT 357 P + + + + +I W +D +AW +G TG+P++DA MRQLN G++HNR R + Sbjct: 282 TPDLAVAN-YKSFPNEIAWREDDTAFEAWTRGETGYPLVDAGMRQLNAEGYVHNRPRQVV 340 Query: 358 ASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKR 417 ASFL K LL+DWR G YF +QL+D D ASN+G WQW ASTG DSV RIF+P Q + Sbjct: 341 ASFLTKHLLIDWRRGARYFTTQLIDHDHASNHGAWQWTASTGTDSVD-VRIFDPVAQMAK 399 Query: 418 FDPQGTFIRHWLPELNNVPTQYIH--APHSWLDKNDLSLNYPLPIVDHKKA 466 +D TF++ ++PEL +VP + I S +++ L+ YP PIVD + Sbjct: 400 YDADATFVKEYVPELRDVPAEEIVDWPTLSRVERETLAPEYPHPIVDRNEG 450 >gi|45935264|gb|AAS79667.1| cryptochrome 2B apoprotein [Pisum sativum] gi|45935266|gb|AAS79668.1| cryptochrome 2B apoprotein [Pisum sativum] Length = 598 Score = 199 bits (506), Expect = 7e-49, Method: Compositional matrix adjust. Identities = 139/474 (29%), Positives = 232/474 (48%), Gaps = 23/474 (4%) Query: 6 AMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASL 65 M+ +VW R DLRI DN AL AA D V VFI P++ Q ++ SL Sbjct: 2 GMNRTIVWFRRDLRIEDNPALAAAAR--DGSVFPVFIWCPKEEGQFYPGRVSRWWMKQSL 59 Query: 66 LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYE-INEVRRDKLLE 124 + + +SL G + D +++ L + TK+ +N Y+ ++ VR + E Sbjct: 60 VHLDQSLKSLGAGLVIIKT---DSTLKALLECVNAVQATKVVFNHLYDPVSLVRDHNIKE 116 Query: 125 KRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL 184 K ++ V +S++ +L P I + + + + PF + ++ P I Sbjct: 117 KLVEQGVSVQSYNGDLLYEPWEIFDESGHAFTTFDPFWNTCLHMQMKTYSPIPPCQLILA 176 Query: 185 TGPVTPSNIPRFF------DYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPA 238 G V +I + ++ + G + L +F + + +Y R Sbjct: 177 QGKVEKHSIEQLGLEDELEKSSNSSLGRSWSPGWSKSDKALAEFIENYLLHYSGNRLNLG 236 Query: 239 IQGTSQLSPYLSIGVLSPRQCWNRLKEEFV----DLLIKPKSGAFSWLNELIWREFYRHL 294 TS LSPY+ G LS R+ + + + + + I + A +L + +RE+ R+L Sbjct: 237 GDSTSLLSPYIHFGELSVRKVFQLARTKQILWTHEGNIIGEESATLFLRAIGFREYSRYL 296 Query: 295 MAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLR 354 +P + +P + + WN D +AW+QG TG+P++DA MR+L GW+HN++R Sbjct: 297 CFSFP-FTLERPLLGNLKFFPWNNDPSNFKAWRQGRTGYPLVDAGMRELWATGWIHNKMR 355 Query: 355 MITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQ 414 +I +SF VK LL+ W+ G +YF LLD DL S+ GWQ+ + + D R+ +P + Sbjct: 356 VIVSSFAVKMLLIPWKWGMKYFWDTLLDADLESDILGWQYISGSLPDGHKLERLDDPEVL 415 Query: 415 GKRFDPQGTFIRHWLPELNNVPTQYIH----APHSWLDKNDLSL--NYPLPIVD 462 G+++DP G +IR WLPEL +P ++IH AP + L + + L NYP PI+D Sbjct: 416 GRKYDPAGEYIRQWLPELARMPAEWIHHPWDAPLTVLTASGVELGQNYPKPIID 469 >gi|83814965|ref|YP_445212.1| deoxyribodipyrimidine photolyase [Salinibacter ruber DSM 13855] gi|83756359|gb|ABC44472.1| deoxyribodipyrimidine photolyase [Salinibacter ruber DSM 13855] Length = 463 Score = 199 bits (506), Expect = 9e-49, Method: Compositional matrix adjust. Identities = 147/483 (30%), Positives = 214/483 (44%), Gaps = 45/483 (9%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 L R DLR+ DN L AC SD +V+ FI P Q +A S +A L++ K Sbjct: 6 LFLFRRDLRLADNTGLARACRASD-EVVPAFIFDPRQCDPDN-NAFFSEHAFAFLVRSLK 63 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130 L ++ D L ++ + NR Y RRD L R Sbjct: 64 ELRRRLRERGGRLFVFEGDPAAILSELVSAGDISAVHVNRDYTPFARRRDDQL------R 117 Query: 131 VICKS----FDDS---VLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIR 183 +C+ F S +L P + Y +TPFR+ +A S P P + Sbjct: 118 SVCREEGARFQSSNALLLTEPEEVQPSGGGAYHTFTPFRR-------RAQSVSTPPPRGK 170 Query: 184 LTGP-------VTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDI 236 + GP V + + + YP D G + L + E + Y + R Sbjct: 171 VEGPFCDRALSVETTPLETYDRYPTD--DLRAKGGRAEGIEFLEEI--ETLGAYRDARHQ 226 Query: 237 PAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMA 296 PA + + LS + G +S R+ +K+ F D +++ WR+FY HL+ Sbjct: 227 PAKESLTALSAHHKFGTISIRESLYVVKKAFEDY--------HKLISQFYWRDFYTHLL- 277 Query: 297 FYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMI 356 F+ + P I W + W +G TG P +DA MR+L G+MHNR+RM+ Sbjct: 278 FHRPEQLTTSLRPIGRHIPWRNERGEFDRWHEGATGVPFVDAGMRELRETGYMHNRVRMV 337 Query: 357 TASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGK 416 ASFL KDLLVDWR G ++F L D D A N G WQWAAS G D RI+NP Q + Sbjct: 338 VASFLTKDLLVDWRWGAQHFARTLTDYDPAVNAGNWQWAASVGTDY--RLRIYNPYSQAE 395 Query: 417 RFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYA 476 + DP+ +I+ W+PE+ +V + A + D +D + YP PIVD A H + + Sbjct: 396 KHDPEAEYIKRWVPEVRDVDADRL-ASGTQEDFSDAAPGYPAPIVDRNDAYHRAKDAFRE 454 Query: 477 AKK 479 A + Sbjct: 455 AGR 457 >gi|114769238|ref|ZP_01446864.1| DNA photolyase, Cryptochrome 1 apoprotein (Blue light photoreceptor) [alpha proteobacterium HTCC2255] gi|114550155|gb|EAU53036.1| DNA photolyase, Cryptochrome 1 apoprotein (Blue light photoreceptor) [alpha proteobacterium HTCC2255] Length = 465 Score = 199 bits (506), Expect = 9e-49, Method: Compositional matrix adjust. Identities = 140/427 (32%), Positives = 206/427 (48%), Gaps = 28/427 (6%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 ++W R D R +D++AL AA H+S +I +FI E + G + + + ++ +K Sbjct: 8 IIWFRRDFRFSDHEALSAA-HSSGRPIIPIFI-FDEVFEALGAAPKWR--LGLAIECFKK 63 Query: 71 SLSQKG---IVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127 L + G I+ + + C E L + ++++R Y+ + RD ++ L Sbjct: 64 KLERMGSNLILRRGNAC-------EILQELVNETGALDVYWSRAYDPVSIHRDTKVKSLL 116 Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPF----RKALIQNLVQADLRSLPVPAIR 183 SF VL P + + +KVYTPF L N + + L P + Sbjct: 117 N----GTSFKGHVLFEPWVPKTKSGENFKVYTPFWRHVSSQLTVNSTLSKISKLHSPHVW 172 Query: 184 LTGPVTPS-NIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGT 242 + + + + + +GE+ AL+ L F KV Y RD P T Sbjct: 173 PKSDLLSNWGLGEEMNRGRNVVSKYINVGEEVALNKLENFIVSKVNGYKIDRDFPMRHAT 232 Query: 243 SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVC 302 S LS L+ G +SPR +N L+ F K GA +L EL+WREF HL+ +P + Sbjct: 233 SGLSENLTYGEISPRLIFNSLRNTFD----KNDLGAEHFLKELVWREFAYHLLWHFPKLD 288 Query: 303 MGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLV 362 W + W + +AW QG TG +DA MR+L T G MHNRLRMI S+L Sbjct: 289 TQCWRGEWND-FPWKGINKNAKAWMQGRTGQSFVDAGMRELYTTGTMHNRLRMIVGSYLT 347 Query: 363 KDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQG 422 K L DWRIG ++F L+D D ASN GWQW A G D+ PYFRIFNP +Q ++FD G Sbjct: 348 KHLQTDWRIGLKWFEDCLIDWDPASNAMGWQWIAGCGADAAPYFRIFNPNLQAEKFDSDG 407 Query: 423 TFIRHWL 429 + + WL Sbjct: 408 QYRKKWL 414 >gi|294507095|ref|YP_003571153.1| deoxyribodipyrimidine photolyase [Salinibacter ruber M8] gi|294343423|emb|CBH24201.1| Deoxyribodipyrimidine photolyase [Salinibacter ruber M8] Length = 494 Score = 199 bits (505), Expect = 1e-48, Method: Compositional matrix adjust. Identities = 146/483 (30%), Positives = 214/483 (44%), Gaps = 45/483 (9%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 L R DLR+ DN L AC SD +V+ FI P Q +A S +A L++ K Sbjct: 37 LFLFRRDLRLADNTGLARACRASD-EVVPAFIFDPRQCDPDN-NAFFSEHAFAFLVRSLK 94 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130 L ++ D L ++ + NR Y RRD L R Sbjct: 95 ELRRRLRERGGRLFVFEGDPAAILSELISAGDISAVHVNRDYTPFARRRDDQL------R 148 Query: 131 VICK-------SFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIR 183 +C+ S + +L P + Y +TPFR+ +A S P P + Sbjct: 149 SVCREEGARFQSSNALLLTEPEEVQPSGGGAYHTFTPFRR-------RAQSVSTPPPRGK 201 Query: 184 LTGP-------VTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDI 236 + GP V + + + YP D G + L + E + Y + R Sbjct: 202 VEGPFCDRALSVETTPLETYDRYPTD--DLRAKGGRAEGIEFLEEI--ETLGAYRDARHQ 257 Query: 237 PAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMA 296 PA + + LS + G +S R+ +K+ F D +++ WR+FY HL+ Sbjct: 258 PAKESLTALSAHHKFGTISIRESLYVVKKAFEDY--------HKLISQFYWRDFYTHLL- 308 Query: 297 FYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMI 356 F+ + P I W + W +G TG P +DA MR+L G+MHNR+RM+ Sbjct: 309 FHRPEQLTTSLRPIGRHIPWRNERGEFDRWHEGATGVPFVDAGMRELRETGYMHNRVRMV 368 Query: 357 TASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGK 416 ASFL KDLLVDWR G ++F L D D A N G WQWAAS G D RI+NP Q + Sbjct: 369 VASFLTKDLLVDWRWGAQHFARTLTDYDPAVNAGNWQWAASVGTDY--RLRIYNPYSQAE 426 Query: 417 RFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYA 476 + DP+ +I+ W+PE+ +V + A + D +D + YP PIVD A H + + Sbjct: 427 KHDPEAEYIKRWVPEVRDVDADRL-ASGTQEDFSDAAPGYPAPIVDRNDAYHRAKDAFRE 485 Query: 477 AKK 479 A + Sbjct: 486 AGR 488 >gi|167581248|ref|ZP_02374122.1| deoxyribodipyrimidine photolyase [Burkholderia thailandensis TXDOH] Length = 311 Score = 199 bits (505), Expect = 1e-48, Method: Compositional matrix adjust. Identities = 112/274 (40%), Positives = 150/274 (54%), Gaps = 8/274 (2%) Query: 210 IGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVD 269 GE A +LR F ++ Y +RD P I TS+LSPY+ G LS RQ W+ + Sbjct: 39 FGEDAAHSLLRAFVDSRLGGYATERDRPGIASTSRLSPYVRFGNLSVRQIWHAAVDAHAH 98 Query: 270 LLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQG 329 ++ +L+EL WREF + +P + + + + W D L AW++G Sbjct: 99 RAAT-QADLDKFLSELGWREFCWAQLYRFPDLPR-RNLRHTLDGMPWRDDPAGLAAWRRG 156 Query: 330 YTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNN 389 TG+P +DA MR+L GWMHNR RM+ ASFLVK LL+DWR GE +F L+D D ASN Sbjct: 157 ATGYPFVDAGMRELWATGWMHNRARMVCASFLVKHLLIDWREGEAWFWDTLVDADAASNA 216 Query: 390 GGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDK 449 WQW A G D+ PYFRIFNP QGK+FDP G ++R W+PEL +P IH P + Sbjct: 217 ANWQWVAGCGADAAPYFRIFNPVAQGKKFDPDGAYVRRWVPELAGLPPAAIHEPWAAPPA 276 Query: 450 ND------LSLNYPLPIVDHKKACHHTLNQYYAA 477 L YP+P+V H A L+ + A Sbjct: 277 QLAAAGVRLGDTYPVPVVAHDAARRRALDAFATA 310 >gi|167619333|ref|ZP_02387964.1| deoxyribodipyrimidine photolyase [Burkholderia thailandensis Bt4] Length = 311 Score = 199 bits (505), Expect = 1e-48, Method: Compositional matrix adjust. Identities = 112/274 (40%), Positives = 149/274 (54%), Gaps = 8/274 (2%) Query: 210 IGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVD 269 GE A +LR F ++ Y +RD P I TS+LSPY+ G LS RQ W + Sbjct: 39 FGEDAAHSLLRAFVDSRLGGYATERDRPGIASTSRLSPYVRFGNLSVRQIWQAAVDAHAH 98 Query: 270 LLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQG 329 ++ +L+EL WREF + +P + + + + W D L AW++G Sbjct: 99 RAAT-QADLDKFLSELGWREFCWAQLYRFPDLPR-RNLRHTLDGMPWRDDPAGLAAWRRG 156 Query: 330 YTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNN 389 TG+P +DA MR+L GWMHNR RM+ ASFLVK LL+DWR GE +F L+D D ASN Sbjct: 157 ATGYPFVDAGMRELWATGWMHNRARMVCASFLVKHLLIDWREGEAWFWDTLVDADAASNA 216 Query: 390 GGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDK 449 WQW A G D+ PYFRIFNP QGK+FDP G ++R W+PEL +P IH P + Sbjct: 217 ANWQWVAGCGADAAPYFRIFNPVAQGKKFDPDGAYVRRWVPELAGLPPAAIHEPWAAPPA 276 Query: 450 ND------LSLNYPLPIVDHKKACHHTLNQYYAA 477 L YP+P+V H A L+ + A Sbjct: 277 QLAAAGVRLGDTYPVPVVAHDAARRRALDAFATA 310 >gi|224063235|ref|XP_002301054.1| predicted protein [Populus trichocarpa] gi|222842780|gb|EEE80327.1| predicted protein [Populus trichocarpa] Length = 681 Score = 198 bits (504), Expect = 1e-48, Method: Compositional matrix adjust. Identities = 149/485 (30%), Positives = 225/485 (46%), Gaps = 46/485 (9%) Query: 5 TAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHF-IYA 63 + +VW R DLR+ DN AL A V+AVF+ PE+ H R S + + Sbjct: 2 SGGGCSIVWFRRDLRVEDNPALAAGVRA--GAVVAVFVWAPEE-EGHYYPGRVSRWWLKQ 58 Query: 64 SLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYE-INEVRRDKL 122 SL + SL G + + DS+ L T+LF+N Y+ ++ VR + Sbjct: 59 SLAHLDSSLRSLGTSLVTKRST---DSVSTLLEVIKSTGATQLFFNHLYDPLSLVRDHRA 115 Query: 123 LEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAI 182 E + +SF+ +L P + + + + + F + + LP P Sbjct: 116 KEVLTAQGIAVRSFNADLLYEPWDVNDAQGRPFTTFATFWDRCLSMPFDPEAPLLP-PKR 174 Query: 183 RLTGPVT--PSNIPRFFDYPFQAIDPMFP----IGEQNALHILRKFCKEKVYYYVEQRDI 236 ++G + PS + F D + + + G NA L F + Y + R Sbjct: 175 IISGDASRCPSEMLVFEDELEKGSNALLARAWSPGWSNADRALTTFINGPLIEYSKNRRK 234 Query: 237 PAIQGTSQLSPYLSIGVLSPRQCW--------------NRLKEEFVDLLIKPKSGAFSWL 282 TS LSP+L G +S R+ + N+ EE V+L +K Sbjct: 235 ADSATTSFLSPHLHFGEVSVRKVFHLVRIKQVLWANEGNKAGEESVNLFLK--------- 285 Query: 283 NELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQ 342 + RE+ R+L +P +P + + W D +AW+QG TG+P++DA MR+ Sbjct: 286 -SIGLREYSRYLSFNHP-YSHERPLLGHLKFFPWVVDGGYFKAWRQGRTGYPLVDAGMRE 343 Query: 343 LNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDS 402 L GW+H+R+R++ ASF VK L + WR G +YF LLD DL S+ GWQ+ T D Sbjct: 344 LWATGWLHDRIRVVVASFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYITGTLPDG 403 Query: 403 VPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIH----APHSWLDKNDLSL--NY 456 + RI NP +G +FDP G ++R WLPEL +PT++IH AP S L + L NY Sbjct: 404 REFDRIDNPQFEGYKFDPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNY 463 Query: 457 PLPIV 461 PLPIV Sbjct: 464 PLPIV 468 >gi|254424429|ref|ZP_05038147.1| cryptochrome, DASH family [Synechococcus sp. PCC 7335] gi|196191918|gb|EDX86882.1| cryptochrome, DASH family [Synechococcus sp. PCC 7335] Length = 490 Score = 198 bits (504), Expect = 1e-48, Method: Compositional matrix adjust. Identities = 141/494 (28%), Positives = 240/494 (48%), Gaps = 36/494 (7%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGIS-----ARQSHFIYASL 65 L+WLRNDLR+ D++ L+ A A +I V+ P Q++ + ++ F+ ++ Sbjct: 4 LLWLRNDLRLHDHEPLHRATEQG-ADIIPVYCFDPRQFQATSFGFPKTGSYRAQFLIETV 62 Query: 66 LQVQKSLSQKG---IVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKL 122 ++ L +G ++ Q ++ D + ++++ + E+ ++ Sbjct: 63 AALKAELRSRGSNLVILQGKPEEEIPALVKAFD-------IAAVYWHEEVTPEEIEVEQR 115 Query: 123 LEKRL-QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPA 181 LE L Q +V + + + L P + Q+ +V+T FRKA+ +N P Sbjct: 116 LETVLNQLKVTSEVYWGATLYHPDDLPFEVSQLPEVFTQFRKAIEKNTQVFPTFPTPEKL 175 Query: 182 IRLTGPVTPSNIPRFFDYPFQ--AIDPM----FPIGEQNALHILRKFC--KEKVYYYVEQ 233 L + P +P D + ID F GE L L+ + +++ Y E Sbjct: 176 PSLPNEIEPGELPSLSDLGLERTPIDEKGVLPFKGGESKGLDRLQHYFWNADRLQRYKET 235 Query: 234 RD-IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYR 292 R+ + +S+ SP+L+ G LSPR+ + ++ + K + + + EL+WR+++R Sbjct: 236 RNGMLGADYSSKFSPWLANGSLSPRRVYEEVQR--YERERKKNNSTYWMIFELMWRDYFR 293 Query: 293 HLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNR 352 + Y K I IEW +D W++G TG+P+IDA MR+L G+M NR Sbjct: 294 FVCVKYGRKIFRKGGIRGL-PIEWQQDWKRFDLWREGKTGYPLIDANMRELAATGFMSNR 352 Query: 353 LRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPT 412 R ASFL K+L +DWR+G E+F S L+D D+ SN G W + A GND+ FR FN Sbjct: 353 GRQNVASFLTKNLGIDWRMGAEWFESLLIDYDVCSNWGNWNYTAGVGNDARG-FRYFNIP 411 Query: 413 IQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND------LSLNYPLPIVDHKKA 466 Q K +D +G +++HWLPEL +P + +H P + L ++YP P+VD +K+ Sbjct: 412 KQSKDYDSEGKYVKHWLPELKTLPAKKVHTPWTLQTVEQKQFNVRLGVDYPNPVVDLQKS 471 Query: 467 CHHTLNQYYAAKKQ 480 +Y A +Q Sbjct: 472 VSVNERRYEDAWQQ 485 >gi|284173137|ref|ZP_06387106.1| Deoxyribodipyrimidine photo-lyase [Sulfolobus solfataricus 98/2] gi|261600969|gb|ACX90572.1| Deoxyribodipyrimidine photo-lyase [Sulfolobus solfataricus 98/2] Length = 431 Score = 197 bits (502), Expect = 3e-48, Method: Compositional matrix adjust. Identities = 151/459 (32%), Positives = 220/459 (47%), Gaps = 57/459 (12%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHG--ISARQSHFIYASLLQV 68 L R DLR+ DN L A N + KVI FI P Q S +F+ SL ++ Sbjct: 4 LFIFRRDLRLDDNTGLIKALGNCE-KVIPTFILDPRQVGDENQYKSEFAINFMINSLNEL 62 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128 L ++G + F + E + S L + V ++ N Y RD+ + K + Sbjct: 63 NDELGKRGSRLYVY----FGLAEEVIKS--LLKDVDAVYLNEDYTPFSKMRDERIRKYCE 116 Query: 129 HR-VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKAL----IQNLVQADLRSLPVPAIR 183 R + KSF+D +L N YK +T F A+ ++ +Q + + ++ Sbjct: 117 ERGKVMKSFEDYLLTSKNDFKN-----YKNFTTFYNAVKNKQVRKPIQNNYTNYYKNSLG 171 Query: 184 LTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS 243 + PS R G + L ++ + K+ Y +RD A + Sbjct: 172 DEYELPPSQGERG--------------GRKEGLKLIDR-AKQIDY---SRRDFVAEDNRT 213 Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCM 303 LSP+L G LS R+ + L + + + +L WR+FY L+A+Y Sbjct: 214 FLSPHLKFGTLSVREVYYSLVDNQ------------AIIRQLYWRDFY-TLLAYYNERVF 260 Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363 +P IEW + LLQAW G TG+PIIDA MRQLN G M NR+RM+TA FLVK Sbjct: 261 YEPLRREYSCIEWGNNEKLLQAWVHGKTGYPIIDAGMRQLNQTGDMPNRVRMLTAFFLVK 320 Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423 LL+DW+IGE YF S+L+D D + NNG WQW AS G D + FR+F+P Q +DP+ Sbjct: 321 VLLIDWKIGERYFASKLIDYDPSVNNGNWQWIASVGTDYI--FRVFDPWKQQITYDPEAK 378 Query: 424 FIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVD 462 +I+ W+ EL + + IH + + K NYP PIVD Sbjct: 379 YIKRWVKELEDYDAKIIHNAYKYTLK-----NYPNPIVD 412 >gi|154343744|ref|XP_001567816.1| DNA repair enzyme [Leishmania braziliensis MHOM/BR/75/M2904] Length = 541 Score = 197 bits (501), Expect = 3e-48, Method: Compositional matrix adjust. Identities = 157/541 (29%), Positives = 233/541 (43%), Gaps = 94/541 (17%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIA---TPEQWRQHGISARQSHFIYASL 65 V L R DLR+ DN L A C + + I+V A P Q + R +F A Sbjct: 27 VALFLFRRDLRVVDNTGLQALCDEAAHRSISVLTAFFFNPIQCDKE----RNPYFGDAFF 82 Query: 66 LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQ------RVTKLFYNRQYEINEVRR 119 +SL + Q SN + D CL++ V L +N Y + R Sbjct: 83 QFFCESLVD---LDGAAQLSNGLVCLRGSDEECLRRIHDSGYEVKVLGFNEDYTPFALSR 139 Query: 120 DKLLEKRLQ-HRVICKSF-DDSVLLPPGSILNHALQMYKVYTPFRKALIQN--------- 168 D+LL + H ++C + D L P + Q Y V+TPF K + Sbjct: 140 DRLLRDYAEKHGIVCVTGPHDYSLRPLDDVAKGPDQPYSVFTPFYKKFMAEHAHRVAEPL 199 Query: 169 -----LVQADLRSLPVPAIR--LTGPVTP-SNIPRFFDYPFQAIDPMFPIGEQNALHILR 220 VQ+ L S P + L P +++P+ D+ +A + R Sbjct: 200 WGNVKKVQSMLVSQPKKHLEHHLVNPARLYTHMPQVQDHGGRAEG------------LKR 247 Query: 221 KFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFS 280 C E + Y + RD A TS LSP++ G +S R+ W+ ++ Sbjct: 248 LACVETLRRYADVRDDIAGDKTSHLSPHMKCGTVSTREVWH--------ASVQALGTGHP 299 Query: 281 WLNELIWREFYRHLMAFYPSVCMGK--------------------PFIPWTEKIEWNKDS 320 + +L+WREFY L P + G+ PF P + WN + Sbjct: 300 FTRQLVWREFYAMLAFTRPRLLQGQLNSFLGKKNIMKATQPKQNAPFQPSYDNYTWNWKA 359 Query: 321 HLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQL 380 +A+K+G TG P++DAA+R L GW HNR R++ ++F VK L +DWR E +F + Sbjct: 360 EHFEAFKEGRTGVPLVDAAVRCLTATGWCHNRCRLVISNFAVKVLGIDWRECERWFATVA 419 Query: 381 LDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYI 440 +D D+A+NNGGW W++ G D+ PYFR FN Q +RFDP FI W+PEL VP + Sbjct: 420 VDYDVANNNGGWLWSSGQGADAQPYFRTFNAFRQSERFDPDCKFIFQWVPELAEVPPSVV 479 Query: 441 H------------APHSWLDKND-------LSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481 H A ++ K D + +YP+PIVD K A + +Y K Sbjct: 480 HKWEEYCAKDRDKATTNYSKKRDDMGKRGAYTTSYPVPIVDTKAATKAIIEEYKKYGKSK 539 Query: 482 L 482 + Sbjct: 540 M 540 >gi|322505598|emb|CAM40576.2| putative deoxyribodipyrimidine photolyase [Leishmania braziliensis MHOM/BR/75/M2904] Length = 541 Score = 197 bits (501), Expect = 3e-48, Method: Compositional matrix adjust. Identities = 157/541 (29%), Positives = 233/541 (43%), Gaps = 94/541 (17%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIA---TPEQWRQHGISARQSHFIYASL 65 V L R DLR+ DN L A C + + I+V A P Q + R +F A Sbjct: 27 VALFLFRRDLRVVDNTGLQALCDEAAHRSISVLTAFFFNPIQCDKE----RNPYFGDAFF 82 Query: 66 LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQ------RVTKLFYNRQYEINEVRR 119 +SL + Q SN + D CL++ V L +N Y + R Sbjct: 83 QFFCESLVD---LDGAAQLSNGLVCLRGSDEECLRRIRDSGYEVKVLGFNEDYTPFALSR 139 Query: 120 DKLLEKRLQ-HRVICKSF-DDSVLLPPGSILNHALQMYKVYTPFRKALIQN--------- 168 D+LL + H ++C + D L P + Q Y V+TPF K + Sbjct: 140 DRLLRDYAEKHGIVCVTGPHDYSLRPLDDVAKGPDQPYSVFTPFYKKFMAEHAHRVAEPL 199 Query: 169 -----LVQADLRSLPVPAIR--LTGPVTP-SNIPRFFDYPFQAIDPMFPIGEQNALHILR 220 VQ+ L S P + L P +++P+ D+ +A + R Sbjct: 200 WGNVKKVQSMLVSQPKKHLEHHLVNPARLYTHMPQVQDHGGRAEG------------LKR 247 Query: 221 KFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFS 280 C E + Y + RD A TS LSP++ G +S R+ W+ ++ Sbjct: 248 LACVETLRRYADVRDDIAGDKTSHLSPHMKCGTVSTREVWH--------ASVQALGTGHP 299 Query: 281 WLNELIWREFYRHLMAFYPSVCMGK--------------------PFIPWTEKIEWNKDS 320 + +L+WREFY L P + G+ PF P + WN + Sbjct: 300 FTRQLVWREFYAMLAFTRPRLLQGQLNSFLGKKNIMKATQPKQNAPFQPSYDNYTWNWKA 359 Query: 321 HLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQL 380 +A+K+G TG P++DAA+R L GW HNR R++ ++F VK L +DWR E +F + Sbjct: 360 EHFEAFKEGRTGVPLVDAAVRCLTATGWCHNRCRLVISNFAVKVLGIDWRECERWFATVA 419 Query: 381 LDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYI 440 +D D+A+NNGGW W++ G D+ PYFR FN Q +RFDP FI W+PEL VP + Sbjct: 420 VDYDVANNNGGWLWSSGQGADAQPYFRTFNAFRQSERFDPDCKFIFQWVPELAEVPPSVV 479 Query: 441 H------------APHSWLDKND-------LSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481 H A ++ K D + +YP+PIVD K A + +Y K Sbjct: 480 HKWEEYCAKDRDKATTNYSKKRDDMGKRGAYTTSYPVPIVDTKAATKAIIEEYKKYGKSK 539 Query: 482 L 482 + Sbjct: 540 M 540 >gi|133921974|emb|CAI63876.1| cryptochrome 2 [Brassica napus] Length = 618 Score = 197 bits (501), Expect = 3e-48, Method: Compositional matrix adjust. Identities = 157/481 (32%), Positives = 240/481 (49%), Gaps = 45/481 (9%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 +VW R DLRI DN AL AA H + V VFI PE+ Q ++ SL + + Sbjct: 8 IVWFRRDLRIEDNPALAAAAH--EGSVFPVFIWCPEEEGQFYPGRASRWWMKQSLAHLTQ 65 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQR-VTKLFYNRQYEINEVRRDKLLEKRLQH 129 SL G + N +I LD C++ TK+ +N Y+ + RD ++++L Sbjct: 66 SLKALGSEPTLIKTHNTVSAI--LD--CVRATGATKVVFNHLYDPVSLVRDHTVKEKLVE 121 Query: 130 RVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT--G 186 R I +S++ +L P I + + + + K + V++ + P I LT G Sbjct: 122 RGISVQSYNGDLLYEPWEIYCEKGKPFTNFNSYWKKCLDMPVESVVIPPPWRLIPLTAAG 181 Query: 187 PVTPSNIPRF-----FDYPFQAI-DPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ 240 V +I + P A+ + G NA IL +F ++++ Y + Sbjct: 182 TVWACSIEELGLENEAEKPSNALLTRAWSPGWSNADKILTEFIEKQLIDYAKNSKKVVGN 241 Query: 241 GTSQLSPYLSIGVLSPR---QCWNRLKEEFVDLLIKPKSG-----AFSWLNELIWREFYR 292 TS LSPYL G +S R QC R+K+ + + K+G A +L + R++ R Sbjct: 242 STSLLSPYLHFGEISVRRVFQC-ARMKQ---IIWARDKNGQGVESAVLFLRGIGLRDYSR 297 Query: 293 HLMAFYP-----SVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIG 347 ++ +P S+ F PW + D +AW+QG TG+P++DA MR+L G Sbjct: 298 YICFNFPFTHEQSLLSHLRFFPW------DADVEKFKAWRQGRTGYPLVDAGMRELWATG 351 Query: 348 WMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFR 407 WMHNR+R+I +SF VK LL+ W+ G +YF LLD DL + GWQ+ + + D R Sbjct: 352 WMHNRIRVIVSSFAVKFLLLPWKWGMKYFWDTLLDADLECDIIGWQYISGSLPDGHELDR 411 Query: 408 IFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIH----APHSWLDKN--DLSLNYPLPIV 461 + NP IQG ++DP+G +IR WLPEL +PT++IH AP + L + +L NY PIV Sbjct: 412 LDNPAIQGAKYDPEGEYIRQWLPELARLPTEWIHHPWDAPLTVLKASGVELGTNYAKPIV 471 Query: 462 D 462 D Sbjct: 472 D 472 >gi|296083651|emb|CBI23640.3| unnamed protein product [Vitis vinifera] Length = 646 Score = 197 bits (500), Expect = 4e-48, Method: Compositional matrix adjust. Identities = 149/481 (30%), Positives = 241/481 (50%), Gaps = 35/481 (7%) Query: 5 TAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYAS 64 ++ S +VW R DLR+ DN AL A + V+ VFI P++ Q ++ S Sbjct: 2 SSDSRTVVWFRRDLRVDDNPALATAA--KEGSVLPVFIWCPKEEGQFYPGRVSRWWLKQS 59 Query: 65 LLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYE-INEVRRDKLL 123 L+ +++SL G + + +IE L TKL YN Y+ I+ VR + Sbjct: 60 LMHLKQSLRSLGADLLLIKA---ESTIEALLECIHAIGATKLVYNHLYDPISLVRDHSIK 116 Query: 124 EKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIR 183 +K ++ + +S++ +L P I + + + + + +Q + SL +P R Sbjct: 117 QKLMELGMSVQSYNGDLLYKPWDIYDDKGNAFTTFEAYWNKCLS--MQMEFVSL-LPPWR 173 Query: 184 L---TGPVTPSNIPRFF--DYPFQAIDPM----FPIGEQNALHILRKFCKEKVYYYVEQR 234 L G V +I D ++ + + + G NA L +F ++ ++ Y ++R Sbjct: 174 LVPAAGKVNNCSIEELGLEDESEKSSNALLGRGWSPGWSNADKALTEFIEQHLFDYSKKR 233 Query: 235 DIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSW-------LNELIW 287 TS LSPYL G LS R+ + ++ + L+ K G W L + Sbjct: 234 LKVEGNSTSLLSPYLHFGELSVRKVLHSVR---MKQLLWVKEGNSVWEESVDLFLRAIGL 290 Query: 288 REFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIG 347 RE+ R+L +PS +P + + W+ +AW+QG TG+P++DA MR+L G Sbjct: 291 REYSRYLCFNFPST-HERPLLSNLKHFPWHAHHVHFKAWRQGRTGYPLVDAGMRELWATG 349 Query: 348 WMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFR 407 W+HNR+R+I +SF VK LL+ W+ G +YF LLD DL S+ GWQ+ + + D R Sbjct: 350 WIHNRIRVIVSSFAVKFLLLPWKWGMKYFWDTLLDADLESDILGWQYISGSLPDGHELDR 409 Query: 408 IFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIH----APHSWLDKNDLSL--NYPLPIV 461 + +P IQG +DP+G ++RHWLPEL VPT++IH AP + L + L NYP PI+ Sbjct: 410 LDSPEIQGSNYDPEGEYVRHWLPELARVPTEWIHHPWDAPFTVLKSAGVELGQNYPKPII 469 Query: 462 D 462 + Sbjct: 470 E 470 >gi|50659746|gb|AAT80619.1| cryptochrome 2 [Arabidopsis thaliana] gi|50659748|gb|AAT80620.1| cryptochrome 2 [Arabidopsis thaliana] gi|50659750|gb|AAT80621.1| cryptochrome 2 [Arabidopsis thaliana] gi|50659752|gb|AAT80622.1| cryptochrome 2 [Arabidopsis thaliana] gi|50659754|gb|AAT80623.1| cryptochrome 2 [Arabidopsis thaliana] Length = 610 Score = 197 bits (500), Expect = 4e-48, Method: Compositional matrix adjust. Identities = 152/488 (31%), Positives = 236/488 (48%), Gaps = 58/488 (11%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 +VW R DLRI DN AL AA H + V VFI PE+ Q ++ SL + + Sbjct: 6 IVWFRRDLRIEDNPALAAAAH--EGSVFPVFIWCPEEEGQFYPGRASRWWMKQSLAHLSQ 63 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQ-QRVTKLFYNRQYEINEVRRDKLLEKRLQH 129 SL G + N +I LD C++ TK+ +N Y+ + RD ++++L Sbjct: 64 SLKALGSDLTLIKTHNTVSAI--LD--CIRVTGATKVVFNHLYDPVSLVRDHTVKEKLVE 119 Query: 130 RVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADL-----RSLPVPAIR 183 R I +S++ +L P I + + + + K + +++ + R +P+ A Sbjct: 120 RGISVQSYNGDLLYEPWEIYCEKGKPFTSFNSYWKKCLDMSIESVMLPPPWRLMPITAAA 179 Query: 184 ---LTGPVTPSNIPRFFDYPFQAI-DPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAI 239 + + + P A+ + G NA +L +F ++++ Y + Sbjct: 180 EAIWACSIEELGLENEAEKPSNALLTRAWSPGWSNADKLLNEFIEKQLIDYAKNSKKVVG 239 Query: 240 QGTSQLSPYLSIGVLSPR---QC-------WNRLK----EEFVDLLIKPKSGAFSWLNEL 285 TS LSPYL G +S R QC W R K EE DL ++ + Sbjct: 240 NSTSLLSPYLHFGEISVRHVFQCARMKQIIWARDKNSEGEESADLFLRG----------I 289 Query: 286 IWREFYRHLMAFYP-----SVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAM 340 RE+ R++ +P S+ F PW + D +AW+QG TG+P++DA M Sbjct: 290 GLREYSRYICFNFPFTHEQSLLSHLRFFPW------DADVEKFKAWRQGRTGYPLVDAGM 343 Query: 341 RQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGN 400 R+L GWMHNR+R+I +SF VK LL+ W+ G +YF LLD DL + GWQ+ + + Sbjct: 344 RELWATGWMHNRIRVIVSSFAVKFLLLPWKWGMKYFWDTLLDADLECDILGWQYISGSIP 403 Query: 401 DSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIH----APHSWLDKN--DLSL 454 D R+ NP +QG ++DP+G +IR WLPEL +PT++IH AP + L + +L Sbjct: 404 DGHELDRLDNPALQGAKYDPEGEYIRQWLPELARLPTEWIHHPWDAPLTVLKASGVELGT 463 Query: 455 NYPLPIVD 462 NY PIVD Sbjct: 464 NYAKPIVD 471 >gi|166007547|gb|ABY77607.1| At1g04400 [Arabidopsis thaliana] gi|166007551|gb|ABY77609.1| At1g04400 [Arabidopsis thaliana] gi|166007555|gb|ABY77611.1| At1g04400 [Arabidopsis thaliana] gi|166007557|gb|ABY77612.1| At1g04400 [Arabidopsis thaliana] gi|166007567|gb|ABY77617.1| At1g04400 [Arabidopsis thaliana] Length = 612 Score = 197 bits (500), Expect = 4e-48, Method: Compositional matrix adjust. Identities = 152/488 (31%), Positives = 236/488 (48%), Gaps = 58/488 (11%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 +VW R DLRI DN AL AA H + V VFI PE+ Q ++ SL + + Sbjct: 8 IVWFRRDLRIEDNPALAAAAH--EGSVFPVFIWCPEEEGQFYPGRASRWWMKQSLAHLSQ 65 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQ-QRVTKLFYNRQYEINEVRRDKLLEKRLQH 129 SL G + N +I LD C++ TK+ +N Y+ + RD ++++L Sbjct: 66 SLKALGSDLTLIKTHNTVSAI--LD--CIRVTGATKVVFNHLYDPVSLVRDHTVKEKLVE 121 Query: 130 RVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADL-----RSLPVPAIR 183 R I +S++ +L P I + + + + K + +++ + R +P+ A Sbjct: 122 RGISVQSYNGDLLYEPWEIYCEKGKPFTSFNSYWKKCLDMSIESVMLPPPWRLMPITAAA 181 Query: 184 ---LTGPVTPSNIPRFFDYPFQAI-DPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAI 239 + + + P A+ + G NA +L +F ++++ Y + Sbjct: 182 EAIWACSIEELGLENEAEKPSNALLTRAWSPGWSNADKLLNEFIEKQLIDYAKNSKKVVG 241 Query: 240 QGTSQLSPYLSIGVLSPR---QC-------WNRLK----EEFVDLLIKPKSGAFSWLNEL 285 TS LSPYL G +S R QC W R K EE DL ++ + Sbjct: 242 NSTSLLSPYLHFGEISVRHVFQCARMKQIIWARDKNSEGEESADLFLRG----------I 291 Query: 286 IWREFYRHLMAFYP-----SVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAM 340 RE+ R++ +P S+ F PW + D +AW+QG TG+P++DA M Sbjct: 292 GLREYSRYICFNFPFTHEQSLLSHLRFFPW------DADVEKFKAWRQGRTGYPLVDAGM 345 Query: 341 RQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGN 400 R+L GWMHNR+R+I +SF VK LL+ W+ G +YF LLD DL + GWQ+ + + Sbjct: 346 RELWATGWMHNRIRVIVSSFAVKFLLLPWKWGMKYFWDTLLDADLECDILGWQYISGSIP 405 Query: 401 DSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIH----APHSWLDKN--DLSL 454 D R+ NP +QG ++DP+G +IR WLPEL +PT++IH AP + L + +L Sbjct: 406 DGHELDRLDNPALQGAKYDPEGEYIRQWLPELARLPTEWIHHPWDAPLTVLKASGVELGT 465 Query: 455 NYPLPIVD 462 NY PIVD Sbjct: 466 NYAKPIVD 473 >gi|225433126|ref|XP_002285169.1| PREDICTED: hypothetical protein [Vitis vinifera] Length = 652 Score = 197 bits (500), Expect = 4e-48, Method: Compositional matrix adjust. Identities = 149/481 (30%), Positives = 241/481 (50%), Gaps = 35/481 (7%) Query: 5 TAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYAS 64 ++ S +VW R DLR+ DN AL A + V+ VFI P++ Q ++ S Sbjct: 2 SSDSRTVVWFRRDLRVDDNPALATAA--KEGSVLPVFIWCPKEEGQFYPGRVSRWWLKQS 59 Query: 65 LLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYE-INEVRRDKLL 123 L+ +++SL G + + +IE L TKL YN Y+ I+ VR + Sbjct: 60 LMHLKQSLRSLGADLLLIKA---ESTIEALLECIHAIGATKLVYNHLYDPISLVRDHSIK 116 Query: 124 EKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIR 183 +K ++ + +S++ +L P I + + + + + +Q + SL +P R Sbjct: 117 QKLMELGMSVQSYNGDLLYKPWDIYDDKGNAFTTFEAYWNKCLS--MQMEFVSL-LPPWR 173 Query: 184 L---TGPVTPSNIPRFF--DYPFQAIDPM----FPIGEQNALHILRKFCKEKVYYYVEQR 234 L G V +I D ++ + + + G NA L +F ++ ++ Y ++R Sbjct: 174 LVPAAGKVNNCSIEELGLEDESEKSSNALLGRGWSPGWSNADKALTEFIEQHLFDYSKKR 233 Query: 235 DIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSW-------LNELIW 287 TS LSPYL G LS R+ + ++ + L+ K G W L + Sbjct: 234 LKVEGNSTSLLSPYLHFGELSVRKVLHSVR---MKQLLWVKEGNSVWEESVDLFLRAIGL 290 Query: 288 REFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIG 347 RE+ R+L +PS +P + + W+ +AW+QG TG+P++DA MR+L G Sbjct: 291 REYSRYLCFNFPST-HERPLLSNLKHFPWHAHHVHFKAWRQGRTGYPLVDAGMRELWATG 349 Query: 348 WMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFR 407 W+HNR+R+I +SF VK LL+ W+ G +YF LLD DL S+ GWQ+ + + D R Sbjct: 350 WIHNRIRVIVSSFAVKFLLLPWKWGMKYFWDTLLDADLESDILGWQYISGSLPDGHELDR 409 Query: 408 IFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIH----APHSWLDKNDLSL--NYPLPIV 461 + +P IQG +DP+G ++RHWLPEL VPT++IH AP + L + L NYP PI+ Sbjct: 410 LDSPEIQGSNYDPEGEYVRHWLPELARVPTEWIHHPWDAPFTVLKSAGVELGQNYPKPII 469 Query: 462 D 462 + Sbjct: 470 E 470 >gi|29467475|dbj|BAC67176.1| cryptochrome 2 [Armoracia rusticana] Length = 617 Score = 197 bits (500), Expect = 4e-48, Method: Compositional matrix adjust. Identities = 157/492 (31%), Positives = 237/492 (48%), Gaps = 58/492 (11%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 +VW R DLRI DN AL AA H + V VFI PE+ Q ++ SL + + Sbjct: 8 IVWFRRDLRIEDNPALAAAAH--EGSVFPVFIWCPEEEGQFYPGRASRWWMKQSLAHLSQ 65 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQ-QRVTKLFYNRQYE-INEVRRDKLLEKRLQ 128 SL G + N +I LD C++ TK+ +N Y+ ++ VR + EK ++ Sbjct: 66 SLKALGSELTLIKTHNTVSAI--LD--CIRITGATKVVFNHLYDPVSLVRDHTVKEKLVE 121 Query: 129 HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLP---VPAIRLT 185 + +SF+ +L P I + + ++ + K + +++ + P +P Sbjct: 122 LGISVQSFNGDLLYEPWEIYFEKGKPFTNFSSYWKKCLDMSIESVMLPPPWRLMPISTAA 181 Query: 186 GPVTPSNIPRF-----FDYPFQAI-DPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAI 239 V +I + P A+ + G NA IL +F ++++ Y + Sbjct: 182 EAVWACSIEELGLENETEKPSNALLTRAWSPGWSNADKILNEFIEKQLIDYAKNSKKVVG 241 Query: 240 QGTSQLSPYLSIGVLSPR---QC-------WNRLK----EEFVDLLIKPKSGAFSWLNEL 285 TS LSPYL G +S R QC W R K +E DL +K + Sbjct: 242 NSTSLLSPYLHYGEISIRRIFQCARMKQIIWARDKNSEGDESADLFLKG----------I 291 Query: 286 IWREFYRHLMAFYP-----SVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAM 340 RE+ R++ +P S+ F PW + D +AW+QG TG+P++DA M Sbjct: 292 GLREYSRYICFNFPFTHEQSLLSHLRFFPW------DTDVDKFKAWRQGRTGYPLVDAGM 345 Query: 341 RQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGN 400 R+L GWMHNRLR+I +SF VK LL+ W+ G +YF LLD DL + GWQ+ + + Sbjct: 346 RELWATGWMHNRLRVIVSSFAVKFLLLPWKWGMKYFWDTLLDADLECDILGWQYISGSLP 405 Query: 401 DSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIH----APHSWLDKN--DLSL 454 D R+ NP IQG ++DP+G +IR WLPEL +PT++IH AP + L + +L Sbjct: 406 DGHELDRLDNPAIQGAKYDPEGEYIRQWLPELARLPTEWIHHPWDAPLTVLKASGVELGT 465 Query: 455 NYPLPIVDHKKA 466 NY PIVD A Sbjct: 466 NYAKPIVDIDTA 477 >gi|15219720|ref|NP_171935.1| CRY2 (CRYPTOCHROME 2); blue light photoreceptor/ protein homodimerization [Arabidopsis thaliana] gi|30678870|ref|NP_849588.1| CRY2 (CRYPTOCHROME 2); blue light photoreceptor/ protein homodimerization [Arabidopsis thaliana] gi|3913379|sp|Q96524|CRY2_ARATH RecName: Full=Cryptochrome-2; AltName: Full=Blue light photoreceptor gi|1857038|gb|AAD09837.1| cryptochrome 2 apoprotein [Arabidopsis thaliana] gi|30793901|gb|AAP40403.1| putative cryptochrome 2 apoprotein [Arabidopsis thaliana] gi|30794033|gb|AAP40463.1| putative cryptochrome 2 apoprotein [Arabidopsis thaliana] gi|166007535|gb|ABY77601.1| At1g04400 [Arabidopsis thaliana] gi|166007545|gb|ABY77606.1| At1g04400 [Arabidopsis thaliana] gi|166007549|gb|ABY77608.1| At1g04400 [Arabidopsis thaliana] gi|166007553|gb|ABY77610.1| At1g04400 [Arabidopsis thaliana] gi|166007559|gb|ABY77613.1| At1g04400 [Arabidopsis thaliana] gi|166007561|gb|ABY77614.1| At1g04400 [Arabidopsis thaliana] gi|166007563|gb|ABY77615.1| At1g04400 [Arabidopsis thaliana] gi|166007565|gb|ABY77616.1| At1g04400 [Arabidopsis thaliana] gi|166007569|gb|ABY77618.1| At1g04400 [Arabidopsis thaliana] gi|166007573|gb|ABY77620.1| At1g04400 [Arabidopsis thaliana] gi|166007575|gb|ABY77621.1| At1g04400 [Arabidopsis thaliana] gi|166007577|gb|ABY77622.1| At1g04400 [Arabidopsis thaliana] gi|166007579|gb|ABY77623.1| At1g04400 [Arabidopsis thaliana] gi|166007585|gb|ABY77626.1| At1g04400 [Arabidopsis thaliana] gi|166007589|gb|ABY77628.1| At1g04400 [Arabidopsis thaliana] gi|166007591|gb|ABY77629.1| At1g04400 [Arabidopsis thaliana] gi|166007597|gb|ABY77632.1| At1g04400 [Arabidopsis thaliana] gi|332189571|gb|AEE27692.1| cryptochrome 2 [Arabidopsis thaliana] gi|332189572|gb|AEE27693.1| cryptochrome 2 [Arabidopsis thaliana] Length = 612 Score = 196 bits (499), Expect = 5e-48, Method: Compositional matrix adjust. Identities = 152/488 (31%), Positives = 236/488 (48%), Gaps = 58/488 (11%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 +VW R DLRI DN AL AA H + V VFI PE+ Q ++ SL + + Sbjct: 8 IVWFRRDLRIEDNPALAAAAH--EGSVFPVFIWCPEEEGQFYPGRASRWWMKQSLAHLSQ 65 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQ-QRVTKLFYNRQYEINEVRRDKLLEKRLQH 129 SL G + N +I LD C++ TK+ +N Y+ + RD ++++L Sbjct: 66 SLKALGSDLTLIKTHNTISAI--LD--CIRVTGATKVVFNHLYDPVSLVRDHTVKEKLVE 121 Query: 130 RVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADL-----RSLPVPAIR 183 R I +S++ +L P I + + + + K + +++ + R +P+ A Sbjct: 122 RGISVQSYNGDLLYEPWEIYCEKGKPFTSFNSYWKKCLDMSIESVMLPPPWRLMPITAAA 181 Query: 184 ---LTGPVTPSNIPRFFDYPFQAI-DPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAI 239 + + + P A+ + G NA +L +F ++++ Y + Sbjct: 182 EAIWACSIEELGLENEAEKPSNALLTRAWSPGWSNADKLLNEFIEKQLIDYAKNSKKVVG 241 Query: 240 QGTSQLSPYLSIGVLSPR---QC-------WNRLK----EEFVDLLIKPKSGAFSWLNEL 285 TS LSPYL G +S R QC W R K EE DL ++ + Sbjct: 242 NSTSLLSPYLHFGEISVRHVFQCARMKQIIWARDKNSEGEESADLFLRG----------I 291 Query: 286 IWREFYRHLMAFYP-----SVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAM 340 RE+ R++ +P S+ F PW + D +AW+QG TG+P++DA M Sbjct: 292 GLREYSRYICFNFPFTHEQSLLSHLRFFPW------DADVDKFKAWRQGRTGYPLVDAGM 345 Query: 341 RQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGN 400 R+L GWMHNR+R+I +SF VK LL+ W+ G +YF LLD DL + GWQ+ + + Sbjct: 346 RELWATGWMHNRIRVIVSSFAVKFLLLPWKWGMKYFWDTLLDADLECDILGWQYISGSIP 405 Query: 401 DSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIH----APHSWLDKN--DLSL 454 D R+ NP +QG ++DP+G +IR WLPEL +PT++IH AP + L + +L Sbjct: 406 DGHELDRLDNPALQGAKYDPEGEYIRQWLPELARLPTEWIHHPWDAPLTVLKASGVELGT 465 Query: 455 NYPLPIVD 462 NY PIVD Sbjct: 466 NYAKPIVD 473 >gi|2341035|gb|AAB70435.1| Match to Arabidopsis photolysase (PHH1) gene (gb|X99061) and cryptochrome 2 apoprotein (CRY2) (gb|U43397). ESTs gb|W43661 and gb|Z25638 come from this gene [Arabidopsis thaliana] gi|50659694|gb|AAT80593.1| cryptochrome 2 [Arabidopsis thaliana] gi|50659696|gb|AAT80594.1| cryptochrome 2 [Arabidopsis thaliana] gi|50659698|gb|AAT80595.1| cryptochrome 2 [Arabidopsis thaliana] gi|50659700|gb|AAT80596.1| cryptochrome 2 [Arabidopsis thaliana] gi|50659702|gb|AAT80597.1| cryptochrome 2 [Arabidopsis thaliana] gi|50659722|gb|AAT80607.1| cryptochrome 2 [Arabidopsis thaliana] gi|50659724|gb|AAT80608.1| cryptochrome 2 [Arabidopsis thaliana] gi|50659726|gb|AAT80609.1| cryptochrome 2 [Arabidopsis thaliana] gi|50659728|gb|AAT80610.1| cryptochrome 2 [Arabidopsis thaliana] gi|50659730|gb|AAT80611.1| cryptochrome 2 [Arabidopsis thaliana] gi|50659732|gb|AAT80612.1| cryptochrome 2 [Arabidopsis thaliana] gi|50659734|gb|AAT80613.1| cryptochrome 2 [Arabidopsis thaliana] gi|50659736|gb|AAT80614.1| cryptochrome 2 [Arabidopsis thaliana] gi|50659738|gb|AAT80615.1| cryptochrome 2 [Arabidopsis thaliana] gi|50659740|gb|AAT80616.1| cryptochrome 2 [Arabidopsis thaliana] gi|50659742|gb|AAT80617.1| cryptochrome 2 [Arabidopsis thaliana] Length = 610 Score = 196 bits (499), Expect = 5e-48, Method: Compositional matrix adjust. Identities = 152/488 (31%), Positives = 236/488 (48%), Gaps = 58/488 (11%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 +VW R DLRI DN AL AA H + V VFI PE+ Q ++ SL + + Sbjct: 6 IVWFRRDLRIEDNPALAAAAH--EGSVFPVFIWCPEEEGQFYPGRASRWWMKQSLAHLSQ 63 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQ-QRVTKLFYNRQYEINEVRRDKLLEKRLQH 129 SL G + N +I LD C++ TK+ +N Y+ + RD ++++L Sbjct: 64 SLKALGSDLTLIKTHNTISAI--LD--CIRVTGATKVVFNHLYDPVSLVRDHTVKEKLVE 119 Query: 130 RVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADL-----RSLPVPAIR 183 R I +S++ +L P I + + + + K + +++ + R +P+ A Sbjct: 120 RGISVQSYNGDLLYEPWEIYCEKGKPFTSFNSYWKKCLDMSIESVMLPPPWRLMPITAAA 179 Query: 184 ---LTGPVTPSNIPRFFDYPFQAI-DPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAI 239 + + + P A+ + G NA +L +F ++++ Y + Sbjct: 180 EAIWACSIEELGLENEAEKPSNALLTRAWSPGWSNADKLLNEFIEKQLIDYAKNSKKVVG 239 Query: 240 QGTSQLSPYLSIGVLSPR---QC-------WNRLK----EEFVDLLIKPKSGAFSWLNEL 285 TS LSPYL G +S R QC W R K EE DL ++ + Sbjct: 240 NSTSLLSPYLHFGEISVRHVFQCARMKQIIWARDKNSEGEESADLFLRG----------I 289 Query: 286 IWREFYRHLMAFYP-----SVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAM 340 RE+ R++ +P S+ F PW + D +AW+QG TG+P++DA M Sbjct: 290 GLREYSRYICFNFPFTHEQSLLSHLRFFPW------DADVDKFKAWRQGRTGYPLVDAGM 343 Query: 341 RQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGN 400 R+L GWMHNR+R+I +SF VK LL+ W+ G +YF LLD DL + GWQ+ + + Sbjct: 344 RELWATGWMHNRIRVIVSSFAVKFLLLPWKWGMKYFWDTLLDADLECDILGWQYISGSIP 403 Query: 401 DSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIH----APHSWLDKN--DLSL 454 D R+ NP +QG ++DP+G +IR WLPEL +PT++IH AP + L + +L Sbjct: 404 DGHELDRLDNPALQGAKYDPEGEYIRQWLPELARLPTEWIHHPWDAPLTVLKASGVELGT 463 Query: 455 NYPLPIVD 462 NY PIVD Sbjct: 464 NYAKPIVD 471 >gi|221638553|ref|YP_002524815.1| Deoxyribodipyrimidine photo-lyase type I [Rhodobacter sphaeroides KD131] gi|221159334|gb|ACM00314.1| Deoxyribodipyrimidine photo-lyase type I [Rhodobacter sphaeroides KD131] Length = 471 Score = 196 bits (499), Expect = 5e-48, Method: Compositional matrix adjust. Identities = 143/478 (29%), Positives = 218/478 (45%), Gaps = 33/478 (6%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 ++W R DLR+ DN L A +I +FI PE + A + + + Sbjct: 8 ILWFRRDLRLADNPMLAEAAATGR-PLIPLFILDPET---EALGAAPKWRLGLGVEAFAR 63 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130 +L G + ++ L++ + + ++R +E RD+ ++ L+ Sbjct: 64 ALEGLGSRLVLRRGP----ALAVLEALVAETGAAGVHWSRLWEPAWRARDEGVKAGLRQA 119 Query: 131 VI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP-- 187 I S + P + Y+VYTPF KA+ V A S P PA RL P Sbjct: 120 GIEAASHAGHTIFEPREVETGQGGFYRVYTPFWKAVKDRPVAA---SSPPPA-RLPSPAE 175 Query: 188 ------VTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQG 241 + ++ R + + P +GE A L +F + Y +RD P Sbjct: 176 WPVSERLACWDLGRAMNRGAAVVAPHLAVGEAAAAERLARFLSGPLDRYAAERDRPDAPV 235 Query: 242 TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSV 301 TS+LS L+ G +S R W+ + + ++GA +L E+ WREF HL+ P + Sbjct: 236 TSRLSENLTYGEISARSLWH----AGMRARAEGRAGAEKFLQEIAWREFGWHLLYHTPEI 291 Query: 302 CMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFL 361 W + W D+ + W++G TG P +DAAMR+L G MHNR R+I S+L Sbjct: 292 ARRNWRGDW-DAFPWRGDNPDAERWRRGMTGEPFVDAAMRELFVTGTMHNRARLIAGSYL 350 Query: 362 VKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQ 421 K LL DWR+G+ +F L+D D ASN GWQW A +G D+ PYFRIFNP Q ++FDP+ Sbjct: 351 TKHLLTDWRVGQAWFEDCLIDWDPASNALGWQWVAGSGPDASPYFRIFNPATQAEKFDPE 410 Query: 422 GTFIRHWLPELNNVPTQYIHA-----PHSWLDKNDLSLNYPLPIVDHKKACHHTLNQY 474 + + ++ E+ P A P SW + D YP P+V + L Y Sbjct: 411 SAYRQRFVAEIARRPGPEALAFFEAVPRSWGLRPDRC--YPGPVVGLAEGRERALAAY 466 >gi|1514443|emb|CAA67508.1| blue light receptor [Arabidopsis thaliana] Length = 612 Score = 196 bits (499), Expect = 5e-48, Method: Compositional matrix adjust. Identities = 152/488 (31%), Positives = 236/488 (48%), Gaps = 58/488 (11%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 +VW R DLRI DN AL AA H + V VFI PE+ Q ++ SL + + Sbjct: 8 IVWFRRDLRIEDNPALAAAAH--EGSVFPVFIWCPEEEGQFYPGRASRWWMKQSLAHLSQ 65 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQ-QRVTKLFYNRQYEINEVRRDKLLEKRLQH 129 SL G + N +I LD C++ TK+ +N Y+ + RD ++++L Sbjct: 66 SLKALGSDLTLIKTHNTISAI--LD--CIRVTGATKVVFNHLYDPVSLVRDHTVKEKLVE 121 Query: 130 RVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADL-----RSLPVPAIR 183 R I +S++ +L P I + + + + K + +++ + R +P+ A Sbjct: 122 RGISVQSYNGDLLYEPWEIYCEKGKPFTSFNSYWKKCLDMSIESVMLPPPWRLMPITAAA 181 Query: 184 ---LTGPVTPSNIPRFFDYPFQAI-DPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAI 239 + + + P A+ + G NA +L +F ++++ Y + Sbjct: 182 EAIWACSIEELGLENEAEKPSNALLTRAWSPGWSNADKLLNEFIEKQLIDYAKNSKKVVG 241 Query: 240 QGTSQLSPYLSIGVLSPR---QC-------WNRLK----EEFVDLLIKPKSGAFSWLNEL 285 TS LSPYL G +S R QC W R K EE DL ++ + Sbjct: 242 NSTSLLSPYLHFGEISVRHVFQCARMKQIIWARDKNSEGEESADLFLRG----------I 291 Query: 286 IWREFYRHLMAFYP-----SVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAM 340 RE+ R++ +P S+ F PW + D +AW+QG TG+P++DA M Sbjct: 292 GLREYSRYICFNFPFTHEQSLLSHLRFFPW------DADVDKFKAWRQGRTGYPLVDAGM 345 Query: 341 RQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGN 400 R+L GWMHNR+R+I +SF VK LL+ W+ G +YF LLD DL + GWQ+ + + Sbjct: 346 RELWATGWMHNRIRVIVSSFAVKFLLLPWKWGMKYFWDTLLDADLECDILGWQYISGSIP 405 Query: 401 DSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIH----APHSWLDKN--DLSL 454 D R+ NP +QG ++DP+G +IR WLPEL +PT++IH AP + L + +L Sbjct: 406 DGHELDRLDNPALQGAKYDPEGEYIRQWLPELARLPTEWIHHPWDAPLTVLKASGVELGT 465 Query: 455 NYPLPIVD 462 NY PIVD Sbjct: 466 NYAKPIVD 473 >gi|110667265|ref|YP_657076.1| deoxyribodipyrimidine photolyase [Haloquadratum walsbyi DSM 16790] gi|109625012|emb|CAJ51427.1| deoxyribodipyrimidine photolyase [Haloquadratum walsbyi DSM 16790] Length = 463 Score = 196 bits (499), Expect = 6e-48, Method: Compositional matrix adjust. Identities = 142/478 (29%), Positives = 226/478 (47%), Gaps = 50/478 (10%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 + L W R D R+ DN L AA V+ V++ + + I RQ F ++ ++ Sbjct: 1 MRLFWHRRDPRLRDNAGLAAAARADSESVLPVYVYDSDLF--GAIGERQQAFWMHAVREL 58 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEIN-EVRRDKLLEKRL 127 +++ ++ + D + + + + + + N+ Y + RR+++ + Sbjct: 59 KEAYRER----ESDLIVRAGDPGDIIPALAEEYDIDGVHCNQHYRPGRQSRRERVASELD 114 Query: 128 QHRVICKSFDDSVLLPPG----SILNHALQMYKVY--TPFRKAL----IQNLVQ-ADLRS 176 + + D VL+ PG S NH+ Q + + P R A + LV D ++ Sbjct: 115 KSGIAFDVRTDHVLVDPGRLDASYPNHS-QFHNDWEDVPKRSAYDSPPAETLVDITDSKT 173 Query: 177 LPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDI 236 +PVP + + P P G + A L +FC +Y Y + RD Sbjct: 174 VPVPTVEIDLP---------------------PSGYEAARDRLDRFCDRGIYDYNDTRDD 212 Query: 237 PA------IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREF 290 A S++SPYLS G++ R+ W+ + + + A + EL WRE Sbjct: 213 LAQAAEKPTTAVSRMSPYLSGGMIGIREVWDAASSVYEAVHGNERRNADKYRYELSWREQ 272 Query: 291 YRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMH 350 HL+ + P + + + +I+W D ++W G TG+P++DA MRQLN G++H Sbjct: 273 NYHLLYYNPDLAVSN-YKSIPNEIQWRDDDEAFKSWALGQTGYPLVDAGMRQLNREGYIH 331 Query: 351 NRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFN 410 NR R + ASFL K LLVDWR G YF QL+D D ASN+G WQW ASTG DSV RIF+ Sbjct: 332 NRPRQVVASFLTKHLLVDWRRGARYFTKQLIDHDYASNHGSWQWIASTGTDSVD-VRIFD 390 Query: 411 PTIQGKRFDPQGTFIRHWLPELNNVPTQYIHA--PHSWLDKNDLSLNYPLPIVDHKKA 466 P Q ++D F+R ++PEL++ PT+ I S D+ + YP PIV + Sbjct: 391 PVSQLSKYDDGANFVREYVPELSDTPTEKIIEWPTLSPGDRAQFAPEYPDPIVGRNEG 448 >gi|50659704|gb|AAT80598.1| cryptochrome 2 [Arabidopsis thaliana] gi|50659706|gb|AAT80599.1| cryptochrome 2 [Arabidopsis thaliana] gi|50659708|gb|AAT80600.1| cryptochrome 2 [Arabidopsis thaliana] gi|50659710|gb|AAT80601.1| cryptochrome 2 [Arabidopsis thaliana] gi|50659712|gb|AAT80602.1| cryptochrome 2 [Arabidopsis thaliana] gi|50659714|gb|AAT80603.1| cryptochrome 2 [Arabidopsis thaliana] gi|50659716|gb|AAT80604.1| cryptochrome 2 [Arabidopsis thaliana] gi|50659718|gb|AAT80605.1| cryptochrome 2 [Arabidopsis thaliana] gi|50659720|gb|AAT80606.1| cryptochrome 2 [Arabidopsis thaliana] Length = 610 Score = 196 bits (499), Expect = 6e-48, Method: Compositional matrix adjust. Identities = 152/488 (31%), Positives = 235/488 (48%), Gaps = 58/488 (11%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 +VW R DLRI DN AL AA H + V VFI PE+ Q ++ SL + + Sbjct: 6 IVWFRRDLRIEDNPALAAAAH--EGSVFPVFIWCPEEEGQFYPGRASRWWMKQSLAHLSQ 63 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQ-QRVTKLFYNRQYEINEVRRDKLLEKRLQH 129 SL G + N +I LD C++ TK+ +N Y+ + RD ++++L Sbjct: 64 SLKALGSDLTLIKTHNTISAI--LD--CIRVTGATKVVFNHLYDPVSLVRDHTVKEKLVE 119 Query: 130 RVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADL-----RSLPVPAIR 183 R I S++ +L P I + + + + K + +++ + R +P+ A Sbjct: 120 RGISVSSYNGDLLYEPWEIYCEKGKPFTSFNSYWKKCLDMSIESVMLPPPWRLMPITAAA 179 Query: 184 ---LTGPVTPSNIPRFFDYPFQAI-DPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAI 239 + + + P A+ + G NA +L +F ++++ Y + Sbjct: 180 EAIWACSIEELGLENEAEKPSNALLTRAWSPGWSNADKLLNEFIEKQLIDYAKNSKKVVG 239 Query: 240 QGTSQLSPYLSIGVLSPR---QC-------WNRLK----EEFVDLLIKPKSGAFSWLNEL 285 TS LSPYL G +S R QC W R K EE DL ++ + Sbjct: 240 NSTSLLSPYLHFGEISVRHVFQCARMKQIIWARDKNSEGEESADLFLRG----------I 289 Query: 286 IWREFYRHLMAFYP-----SVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAM 340 RE+ R++ +P S+ F PW + D +AW+QG TG+P++DA M Sbjct: 290 GLREYSRYICFNFPFTHEQSLLSHLRFFPW------DADVDKFKAWRQGRTGYPLVDAGM 343 Query: 341 RQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGN 400 R+L GWMHNR+R+I +SF VK LL+ W+ G +YF LLD DL + GWQ+ + + Sbjct: 344 RELWATGWMHNRIRVIVSSFAVKFLLLPWKWGMKYFWDTLLDADLECDILGWQYISGSIP 403 Query: 401 DSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIH----APHSWLDKN--DLSL 454 D R+ NP +QG ++DP+G +IR WLPEL +PT++IH AP + L + +L Sbjct: 404 DGHELDRLDNPALQGAKYDPEGEYIRQWLPELARLPTEWIHHPWDAPLTVLKASGVELGT 463 Query: 455 NYPLPIVD 462 NY PIVD Sbjct: 464 NYAKPIVD 471 >gi|166007537|gb|ABY77602.1| At1g04400 [Arabidopsis thaliana] gi|166007541|gb|ABY77604.1| At1g04400 [Arabidopsis thaliana] gi|166007543|gb|ABY77605.1| At1g04400 [Arabidopsis thaliana] gi|166007571|gb|ABY77619.1| At1g04400 [Arabidopsis thaliana] gi|166007581|gb|ABY77624.1| At1g04400 [Arabidopsis thaliana] gi|166007583|gb|ABY77625.1| At1g04400 [Arabidopsis thaliana] gi|166007587|gb|ABY77627.1| At1g04400 [Arabidopsis thaliana] gi|166007593|gb|ABY77630.1| At1g04400 [Arabidopsis thaliana] gi|166007595|gb|ABY77631.1| At1g04400 [Arabidopsis thaliana] Length = 612 Score = 196 bits (499), Expect = 6e-48, Method: Compositional matrix adjust. Identities = 152/488 (31%), Positives = 235/488 (48%), Gaps = 58/488 (11%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 +VW R DLRI DN AL AA H + V VFI PE+ Q ++ SL + + Sbjct: 8 IVWFRRDLRIEDNPALAAAAH--EGSVFPVFIWCPEEEGQFYPGRASRWWMKQSLAHLSQ 65 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQ-QRVTKLFYNRQYEINEVRRDKLLEKRLQH 129 SL G + N +I LD C++ TK+ +N Y+ + RD ++++L Sbjct: 66 SLKALGSDLTLIKTHNTISAI--LD--CIRVTGATKVVFNHLYDPVSLVRDHTVKEKLVE 121 Query: 130 RVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADL-----RSLPVPAIR 183 R I S++ +L P I + + + + K + +++ + R +P+ A Sbjct: 122 RGISVSSYNGDLLYEPWEIYCEKGKPFTSFNSYWKKCLDMSIESVMLPPPWRLMPITAAA 181 Query: 184 ---LTGPVTPSNIPRFFDYPFQAI-DPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAI 239 + + + P A+ + G NA +L +F ++++ Y + Sbjct: 182 EAIWACSIEELGLENEAEKPSNALLTRAWSPGWSNADKLLNEFIEKQLIDYAKNSKKVVG 241 Query: 240 QGTSQLSPYLSIGVLSPR---QC-------WNRLK----EEFVDLLIKPKSGAFSWLNEL 285 TS LSPYL G +S R QC W R K EE DL ++ + Sbjct: 242 NSTSLLSPYLHFGEISVRHVFQCARMKQIIWARDKNSEGEESADLFLRG----------I 291 Query: 286 IWREFYRHLMAFYP-----SVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAM 340 RE+ R++ +P S+ F PW + D +AW+QG TG+P++DA M Sbjct: 292 GLREYSRYICFNFPFTHEQSLLSHLRFFPW------DADVDKFKAWRQGRTGYPLVDAGM 345 Query: 341 RQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGN 400 R+L GWMHNR+R+I +SF VK LL+ W+ G +YF LLD DL + GWQ+ + + Sbjct: 346 RELWATGWMHNRIRVIVSSFAVKFLLLPWKWGMKYFWDTLLDADLECDILGWQYISGSIP 405 Query: 401 DSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIH----APHSWLDKN--DLSL 454 D R+ NP +QG ++DP+G +IR WLPEL +PT++IH AP + L + +L Sbjct: 406 DGHELDRLDNPALQGAKYDPEGEYIRQWLPELARLPTEWIHHPWDAPLTVLKASGVELGT 465 Query: 455 NYPLPIVD 462 NY PIVD Sbjct: 466 NYAKPIVD 473 >gi|8101444|gb|AAF72556.1|AF130425_1 cryptochrome 2 [Solanum lycopersicum] gi|8101446|gb|AAF72557.1|AF130426_1 cryptochrome 2 [Solanum lycopersicum] Length = 635 Score = 196 bits (498), Expect = 6e-48, Method: Compositional matrix adjust. Identities = 153/483 (31%), Positives = 235/483 (48%), Gaps = 51/483 (10%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 +VW R DLRI DN AL AA N V+ VFI P++ Q ++ SL+ +++ Sbjct: 8 IVWFRRDLRIEDNPALAAAARN--GSVLPVFIWCPKEEGQFYPGRVSRWWLKQSLIHLKQ 65 Query: 71 SLSQKG--IVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128 SL G +V Q S E +D+ TK+ YN Y+ + RD ++++L Sbjct: 66 SLKSLGAELVLMKAQ-STLSALTECVDAVG----ATKVVYNHLYDPVSLVRDHNIKQKLG 120 Query: 129 HRVICKSFDDSVLLPPGSILNHALQMY----KVYTPFRKALIQNLVQADLRSLPVPAIRL 184 I SV G +LN ++Y KV+T F ++L + +P RL Sbjct: 121 DLGI------SVQSYNGDLLNEPWEVYDDDGKVFTTFDAYWEKSLSIQNEPVSQLPPWRL 174 Query: 185 TGPVTPSNIPRFFDYPFQA---------IDPMFPIGEQNALHILRKFCKEKVYYYVEQRD 235 T + + + + + G NA L +F + + Y + R Sbjct: 175 TQAAGSVKMCSVEELGLENESEKSSNALLGKGWAPGWSNADKALTEFVESNLLAYSKDRL 234 Query: 236 IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKP-----KSGAFSWLNELIWREF 290 TS LSPYL G +S R+ +N ++ + + L K K A +L + RE+ Sbjct: 235 RVGGNSTSLLSPYLHFGEVSVRKVFNSVRLKQI-LWTKEGNSVGKDSATIYLRAIGLREY 293 Query: 291 YRHLMAFYP-----SVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNT 345 R++ +P S+ F PW N D +AW+QG TG+P++DA MR+L Sbjct: 294 SRYICFNFPFTHERSLLNNLRFFPW------NADQAHFKAWRQGRTGYPLVDAGMRELWA 347 Query: 346 IGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPY 405 GW+HN++R+I +SF VK LL+ W+ G +YF LLD DL S+ GWQ+ + + D Sbjct: 348 TGWVHNKIRVIVSSFFVKFLLLPWQWGMKYFWDTLLDADLESDIIGWQYISGSLPDGHEL 407 Query: 406 FRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIH----APHSWLDKN--DLSLNYPLP 459 R+ NP +QG +DP+G ++RHWLPEL +P ++IH AP + L +L +NYP P Sbjct: 408 ERLDNPEVQGFNYDPEGEYVRHWLPELARMPAEWIHHPWDAPLNVLKAAGVELGMNYPNP 467 Query: 460 IVD 462 I+D Sbjct: 468 IID 470 >gi|218662587|ref|ZP_03518517.1| Deoxyribodipyrimidine photo-lyase [Rhizobium etli IE4771] Length = 208 Score = 196 bits (498), Expect = 7e-48, Method: Compositional matrix adjust. Identities = 96/207 (46%), Positives = 127/207 (61%), Gaps = 13/207 (6%) Query: 284 ELIWREFYRHLMAFYPSVCMGKPFIPWTEKI---EWNKDSHLLQAWKQGYTGFPIIDAAM 340 E+ WREF HL+ +P + W E+ EW D +AW++G TG+PI+DA M Sbjct: 3 EIAWREFSYHLLYHFPRLASAN----WNERFDGFEWRNDDDEFRAWRRGMTGYPIVDAGM 58 Query: 341 RQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGN 400 RQL GWMHNR+RMI ASFLVKDLL+DWR GE +F L+D D A+N WQW A +G Sbjct: 59 RQLRRHGWMHNRVRMIAASFLVKDLLIDWRCGEAWFRDTLVDADPANNAASWQWVAGSGA 118 Query: 401 DSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIH----APHSWLDKNDLSLN- 455 D+ P+FRIFNP +QG+ FDP+G ++ ++PEL + +YIH AP LD + L Sbjct: 119 DASPFFRIFNPVLQGETFDPEGDYVGAYVPELRRLGPKYIHRPFEAPKRVLDAAGIILGH 178 Query: 456 -YPLPIVDHKKACHHTLNQYYAAKKQS 481 YP P+VDH A + L Y A + S Sbjct: 179 TYPAPMVDHGSARNRALAAYDAIRAAS 205 >gi|298694022|gb|ADI97244.1| deoxyribodipyrimidine photolyase, putative [Staphylococcus aureus subsp. aureus ED133] Length = 457 Score = 196 bits (498), Expect = 8e-48, Method: Compositional matrix adjust. Identities = 126/348 (36%), Positives = 182/348 (52%), Gaps = 34/348 (9%) Query: 142 LPPGSILNHALQMYKVYTPFRKA-----LIQNLVQADLRSLPVPAIRLTGPVTPSNIPRF 196 +N + YKV+T F K I+++ DL L I P+N+ Sbjct: 129 FKASKTMNKQGEPYKVFTSFYKKWRPYLRIRDVYHYDLNELIDIVI-----AAPNNLK-- 181 Query: 197 FDYPFQAIDPMFPIGEQNALHILR--KFCKEKVYYYVEQRD-IPAIQGTSQLSPYLSIGV 253 D G A + +F + + Y R+ +P I TSQLS L+ G+ Sbjct: 182 --------DVQIDAGSSQAHEQEKWQQFLEHDIQNYENGREYLPEIL-TSQLSIALAYGL 232 Query: 254 LSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEK 313 L + +N L + + +S +++ ELI+REFY LM YP + F P Sbjct: 233 LDIIEIFNDLLSRYEE----DESNYEAFIRELIFREFYYVLMTQYPESA-HQSFKPKYRH 287 Query: 314 IEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGE 373 I W+++ +AW G TGFPIIDAAM +L G+MHNR+RM+ + FL KDL ++W GE Sbjct: 288 INWSENEADFKAWCDGQTGFPIIDAAMMELRQTGFMHNRMRMVVSQFLTKDLFINWTWGE 347 Query: 374 EYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELN 433 ++F L+D D ASN GWQW+ASTG D+VPYFR+FNP Q +RFDP+ +I+ +LP LN Sbjct: 348 DFFRKYLIDYDAASNVHGWQWSASTGTDAVPYFRMFNPIRQSERFDPKALYIKTYLPVLN 407 Query: 434 NVPTQYIHAPH---SWLDKNDLSL--NYPLPIVDHKKACHHTLNQYYA 476 + +Y+H H S L K + L +YP IVDH++ L + A Sbjct: 408 QIDAKYLHDTHRNESELFKQGIELGRHYPKQIVDHQEKRSQVLATFKA 455 >gi|260906395|ref|ZP_05914717.1| putative deoxyribodipyrimidine photolyase [Brevibacterium linens BL2] Length = 494 Score = 196 bits (497), Expect = 8e-48, Method: Compositional matrix adjust. Identities = 146/464 (31%), Positives = 210/464 (45%), Gaps = 54/464 (11%) Query: 3 ATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHG---ISARQSH 59 TT + LVW R+DLR++D+ AL AA +D +VIAV+I + G + Sbjct: 2 GTTDEDLTLVWFRDDLRVSDHAALTAA--RADGRVIAVWIREARDSQGLGPRPLGGASRW 59 Query: 60 FIYASLLQVQKSLSQKGI--VFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEV 117 + + SL + + LS GI +F + + + V + ++R+Y Sbjct: 60 WAHESLAILHQELSDLGIPLLFAAGEAAAI------IPQLTGSLGVGAVRWSRRYAPASR 113 Query: 118 RRDKLLEKRLQHRVIC-KSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRS 176 D ++ L + + S S+L+ P + YKV+TPF KA+ V D+ Sbjct: 114 ALDSQIKTVLHEQGLAVHSHTGSLLVEPWTAAPQGGDHYKVFTPFWKAVSGREV-GDVLP 172 Query: 177 LPVP-----------------------------AIRLTGPVTPSNIPRFFDYPFQAIDPM 207 P P +G + PR++ I Sbjct: 173 TPEPQSPIDRSLVESARDCTAVTDLDGLGLLDGTGTGSGHFAAVHGPRWWQ---DTIACH 229 Query: 208 FPIGEQNALHILRKFCKEKVYYYVEQRDIPA-IQGTSQLSPYLSIGVLSPRQCWNRLKEE 266 + G + A L + Y RD+P+ TS+LSP L G LSPRQ L Sbjct: 230 WLPGTRAAADQLDDLAV-GIDGYSSTRDVPSDANSTSRLSPRLRFGELSPRQL---LHAA 285 Query: 267 FVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAW 326 + P A +W+ +L WREF HL YP + P + D L W Sbjct: 286 QTTRSVTPDDRA-AWVRQLYWREFSWHLTYHYPDIDY-TPIRREFRNFPYEDDDEALAHW 343 Query: 327 KQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLA 386 + G TG+P+IDA M QL GWMHNR+RM+TASFL K+LL W GE++F L+D D A Sbjct: 344 RSGATGYPLIDAGMAQLWETGWMHNRVRMVTASFLTKNLLQHWWCGEQWFWDALVDADEA 403 Query: 387 SNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLP 430 +N WQW A +G D+ PYFR+FNP Q +RFDP G ++ WLP Sbjct: 404 NNPVSWQWVAGSGADAAPYFRVFNPERQRERFDPDGAYVDDWLP 447 >gi|302332401|gb|ADL22594.1| deoxyribodipyrimidine photolyase [Staphylococcus aureus subsp. aureus JKD6159] Length = 457 Score = 196 bits (497), Expect = 9e-48, Method: Compositional matrix adjust. Identities = 118/340 (34%), Positives = 179/340 (52%), Gaps = 18/340 (5%) Query: 142 LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPF 201 +N + YKV+T F K L D+ + + +P ++ F D F Sbjct: 129 FKASKTMNQQGEPYKVFTSFYKKWRPYLRHRDIYHYDLKSFEDFVIASPDDLV-FDDIAF 187 Query: 202 QAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWN 261 + I EQN + F + + Y RD + TSQLS L+ G+L + +N Sbjct: 188 GSS----QIIEQNKW---QHFLDQDIQNYESGRDYLSEVLTSQLSVALAYGLLDIIEIFN 240 Query: 262 RLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSH 321 L + + ++ +++ ELI+REFY LM YP + F P +I+W+++ Sbjct: 241 DLLARYDE----DEANYEAFIRELIFREFYYVLMTQYPETSY-QAFKPKYRQIKWSQNEA 295 Query: 322 LLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLL 381 AW +G TGFPIIDAA+ +L G+MHNR+RM+ + FL KDL +DW GE++F L+ Sbjct: 296 DFNAWCEGQTGFPIIDAAIMELTQTGFMHNRMRMVVSQFLTKDLFIDWTWGEKFFRKHLI 355 Query: 382 DGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIH 441 D D ASN GWQW+ASTG D+VPYFR+FNP Q +RFD + +I+ +LP N + +Y+H Sbjct: 356 DYDAASNIHGWQWSASTGTDAVPYFRMFNPIRQSERFDAKALYIKTYLPIFNQIDAKYLH 415 Query: 442 APHS-----WLDKNDLSLNYPLPIVDHKKACHHTLNQYYA 476 + +L L+YP +VDH++ L + A Sbjct: 416 DTQRNESNLFEQGIELGLHYPRQMVDHQEKRTQVLATFKA 455 >gi|18026280|gb|AAL16379.1| cryptochrome 2 [Arabidopsis thaliana] Length = 612 Score = 196 bits (497), Expect = 1e-47, Method: Compositional matrix adjust. Identities = 156/492 (31%), Positives = 238/492 (48%), Gaps = 66/492 (13%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 +VW R DLRI DN AL AA H + V VFI PE+ Q ++ SL + + Sbjct: 8 IVWFRRDLRIEDNPALAAAAH--EGSVFPVFIWCPEEEGQFYPGRASRWWMKQSLAHLSQ 65 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQ-QRVTKLFYNRQYEINEVRRDKLLEKRLQH 129 SL G + N +I LD C++ TK+ +N Y+ + RD ++++L Sbjct: 66 SLKALGSDLTLIKTHNTISAI--LD--CIRVTGATKVVFNHLYDPVSLVRDHTVKEKLVE 121 Query: 130 RVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188 R I S++ +L P I + + + + K + +++ + LP P RL P+ Sbjct: 122 RGISVSSYNGDLLYEPWEIYCEKGKPFTSFNSYWKKCLDMSIESVM--LP-PPWRLM-PI 177 Query: 189 TPS------------NIPRFFDYPFQAI-DPMFPIGEQNALHILRKFCKEKVYYYVEQRD 235 T + + + P A+ + G NA +L +F ++++ Y + Sbjct: 178 TAAAEAIWACLIEELGLENEAEKPSNALLTRAWSPGWSNADKLLNEFIEKQLIDYAKNSK 237 Query: 236 IPAIQGTSQLSPYLSIGVLSPR---QC-------WNRLK----EEFVDLLIKPKSGAFSW 281 TS LSPYL G +S R QC W R K EE DL ++ Sbjct: 238 KVVGNSTSLLSPYLHFGEISVRHVFQCARMKQIIWARDKNSEGEESADLFLRG------- 290 Query: 282 LNELIWREFYRHLMAFYP-----SVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPII 336 + RE+ R++ +P S+ F PW + D +AW+QG TG+P++ Sbjct: 291 ---IGLREYSRYICFNFPFTHEQSLLSHLRFFPW------DADVDKFKAWRQGRTGYPLV 341 Query: 337 DAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAA 396 DA MR+L GWMHNR+R+I +SF VK LL+ W+ G +YF LLD DL + GWQ+ + Sbjct: 342 DAGMRELWATGWMHNRIRVIVSSFAVKFLLLPWKWGMKYFWDTLLDADLECDILGWQYIS 401 Query: 397 STGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIH----APHSWLDKN-- 450 + D R+ NP +QG ++DP+G +IR WLPEL +PT++IH AP + L + Sbjct: 402 GSIPDGHELDRLDNPALQGAKYDPEGEYIRQWLPELARLPTEWIHHPWDAPLTVLKASGV 461 Query: 451 DLSLNYPLPIVD 462 +L NY PIVD Sbjct: 462 ELGTNYAKPIVD 473 >gi|83764373|dbj|BAE54523.1| cryptochrome [Marchantia paleacea var. diptera] gi|83764375|dbj|BAE54524.1| cryptochrome [Marchantia paleacea var. diptera] Length = 696 Score = 196 bits (497), Expect = 1e-47, Method: Compositional matrix adjust. Identities = 142/477 (29%), Positives = 233/477 (48%), Gaps = 29/477 (6%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 +VW R DLR+ DN AL AA VI VFI +PE+ Q ++ SL+ + Sbjct: 6 IVWFRRDLRVEDNPALVAAARA--GIVIPVFIWSPEEDGQFHPGRVSRWWLKQSLIHLDS 63 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ-H 129 SL G + D++ L Q T++FYN Y+ + RD +++ L H Sbjct: 64 SLKSLGSPLIMRKSP---DTLTVLLDIVQQVGATQVFYNHLYDPVSLVRDHRVKQGLSIH 120 Query: 130 RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADL------RSLPVPAIR 183 + +F+ +L P + + Q + + F + + + R + +P R Sbjct: 121 NIPVHTFNGDLLYEPWEVYDDEGQAFTTFDDFWDKCMNMPFEPEAPLLSPRRLVGLPPGR 180 Query: 184 LT-GPVTPSNIPRFFDYPFQAI-DPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQG 241 ++ G + + ++ A+ + G +A L F K ++ Y R Sbjct: 181 ISVGRIDDLGLENEYERSSNALLGRAWAPGWSSANKALEVFMKGPLHDYATHRIKADNAN 240 Query: 242 TSQLSPYLSIGVLSPRQCWNRLKEEFV------DLLIKPKSGAFSWLNELIWREFYRHLM 295 TSQLSP+L G +S R+ ++ + + + + + G F L + +RE+ R+L Sbjct: 241 TSQLSPHLHFGEVSVRKIFHEARTKQILWARENSYVGEQSVGMF--LRAIGFREYSRYLS 298 Query: 296 AFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRM 355 +P + + + W D + ++W+QG TG+P++DA MR+L GW+HNR+R+ Sbjct: 299 FNFP-FTHERSLLANLKSFPWRIDENSFKSWRQGRTGYPLVDAGMRELWATGWLHNRIRV 357 Query: 356 ITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQG 415 + +SF VK L + WR G +YF LLD DL + GWQ+ + + D R+ NP I+G Sbjct: 358 VVSSFCVKFLQLPWRWGMKYFWDTLLDADLECDVLGWQYISGSLPDGHELDRMENPQIEG 417 Query: 416 KRFDPQGTFIRHWLPELNNVPTQYIH----APHSWLDKNDLSL--NYPLPIVDHKKA 466 +FDP+G ++R WLPEL+ +PT++IH AP + L + L NYPLPIVD A Sbjct: 418 YKFDPEGEYVRRWLPELSRLPTEWIHHPWDAPANVLRAAGVELGSNYPLPIVDISSA 474 >gi|147810570|emb|CAN71971.1| hypothetical protein VITISV_015253 [Vitis vinifera] Length = 641 Score = 195 bits (496), Expect = 1e-47, Method: Compositional matrix adjust. Identities = 149/481 (30%), Positives = 239/481 (49%), Gaps = 35/481 (7%) Query: 5 TAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYAS 64 ++ S +VW R DLR+ DN AL A + V+ VFI P++ Q ++ S Sbjct: 2 SSDSRTVVWFRRDLRVDDNPALATAA--KEGSVLPVFIWCPKEEGQFYPGRVSRWWLKQS 59 Query: 65 LLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYE-INEVRRDKLL 123 L+ +++SL G + + +IE L TKL YN Y+ I+ VR + Sbjct: 60 LMHLKQSLRSLGADLLLIKA---ESTIEALLECIHAIGATKLVYNHLYDPISLVRDHSIK 116 Query: 124 EKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIR 183 +K ++ + +S++ +L P I + + + + + Q + SL +P R Sbjct: 117 QKLMELGMSVQSYNGDLLYKPWDIYDDKGNAFTTFEAYWNKCLS--XQMEFVSL-LPPWR 173 Query: 184 L---TGPVTPSNIPRFF--DYPFQAIDPM----FPIGEQNALHILRKFCKEKVYYYVEQR 234 L G V +I D ++ + + + G NA L +F ++ ++ Y + R Sbjct: 174 LVPAAGKVNNCSIEELGLEDESEKSSNALLGRGWSPGWSNADKALTEFIEQHLFDYSKXR 233 Query: 235 DIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSW-------LNELIW 287 TS LSPYL G LS R+ + ++ + L+ K G W L + Sbjct: 234 LKVEGNSTSLLSPYLHFGELSVRKVLHSVR---MKQLLWVKEGNSVWEESVDLFLRAIGL 290 Query: 288 REFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIG 347 RE+ R+L +PS +P + + W+ +AW+QG TG+P++DA MR+L G Sbjct: 291 REYSRYLCFNFPST-HERPLLSNLKHFPWHAXHVHFKAWRQGRTGYPLVDAGMRELWATG 349 Query: 348 WMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFR 407 W+HNR+R+I +SF VK LL+ W+ G +YF LLD DL S+ GWQ+ + + D R Sbjct: 350 WIHNRIRVIVSSFAVKFLLLPWKWGMKYFWDTLLDADLESDILGWQYISGSLPDGHELDR 409 Query: 408 IFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIH----APHSWLDKNDLSL--NYPLPIV 461 + +P IQG +DP+G ++RHWLPEL VPT++IH AP + L + L NYP PI+ Sbjct: 410 LDSPEIQGSNYDPEGEYVRHWLPELARVPTEWIHHPWDAPFTVLKSAGVELGQNYPKPII 469 Query: 462 D 462 + Sbjct: 470 E 470 >gi|50659744|gb|AAT80618.1| cryptochrome 2 [Arabidopsis thaliana] Length = 610 Score = 195 bits (496), Expect = 1e-47, Method: Compositional matrix adjust. Identities = 151/488 (30%), Positives = 236/488 (48%), Gaps = 58/488 (11%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 +VW R DLRI DN AL AA H + V VFI PE+ Q ++ SL + + Sbjct: 6 IVWFRRDLRIEDNPALAAAAH--EGSVFPVFIWCPEEEGQFYPGRASRWWMKQSLAHLSQ 63 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQ-QRVTKLFYNRQYEINEVRRDKLLEKRLQH 129 SL G + N +I LD C++ TK+ +N Y+ + RD ++++L Sbjct: 64 SLKALGSDLTLIKTHNTISAI--LD--CIRVTGATKVVFNHLYDPVSLVRDHTVKEKLVE 119 Query: 130 RVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADL-----RSLPVPAIR 183 R I +S++ +L P I + + + + K + +++ + R +P+ A Sbjct: 120 RGISVQSYNGDLLYEPWEIYCEKGKPFTSFNSYWKKCLDMSIESVMLPPPWRLMPITAAA 179 Query: 184 ---LTGPVTPSNIPRFFDYPFQAI-DPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAI 239 + + + P A+ + G NA +L +F ++++ Y + Sbjct: 180 EAIWACSIEELGLENEAEKPSNALLTRAWSPGWSNADKLLNEFIEKQLIDYAKNSKKVVG 239 Query: 240 QGTSQLSPYLSIGVLSPR---QC-------WNRLK----EEFVDLLIKPKSGAFSWLNEL 285 TS LSPYL G +S R QC W R K EE DL ++ + Sbjct: 240 NSTSLLSPYLHFGEISVRHVFQCARMKQIIWARDKNSEGEESADLFLRG----------I 289 Query: 286 IWREFYRHLMAFYP-----SVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAM 340 RE+ R++ +P S+ F PW + D +AW+QG TG+P++DA M Sbjct: 290 GLREYSRYICFNFPFTHEQSLLSHLRFFPW------DADVDKFKAWRQGRTGYPLVDAGM 343 Query: 341 RQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGN 400 R+L GWMHNR+R+I +SF +K LL+ W+ G +YF LLD DL + GWQ+ + + Sbjct: 344 RELWATGWMHNRIRVIVSSFAMKFLLLPWKWGMKYFWDTLLDADLECDILGWQYISGSIP 403 Query: 401 DSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIH----APHSWLDKN--DLSL 454 D R+ NP +QG ++DP+G +IR WLPEL +PT++IH AP + L + +L Sbjct: 404 DGHELDRLDNPALQGAKYDPEGEYIRQWLPELARLPTEWIHHPWDAPLTVLKASGVELGT 463 Query: 455 NYPLPIVD 462 NY PIVD Sbjct: 464 NYAKPIVD 471 >gi|167998114|ref|XP_001751763.1| cryptochrome 1a [Physcomitrella patens subsp. patens] gi|5731739|dbj|BAA83338.1| blue light photoreceptor cryptochrome [Physcomitrella patens] gi|162696861|gb|EDQ83198.1| cryptochrome 1a [Physcomitrella patens subsp. patens] Length = 727 Score = 195 bits (496), Expect = 1e-47, Method: Compositional matrix adjust. Identities = 143/475 (30%), Positives = 228/475 (48%), Gaps = 31/475 (6%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 +VW R DLR+ DN AL AA V+ VF+ +P + Q ++ SL ++ Sbjct: 6 IVWFRRDLRLEDNPALIAAARA--GTVVPVFVWSPAEDGQFHPGRVSRWWLKQSLTHLEL 63 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130 SL + G + D++ L T++FYN Y+ + RD +++ L R Sbjct: 64 SLKKLGSPLILRKSP---DTLSVLLEIAEATGATQVFYNHLYDPVSLVRDHRVKQGLSQR 120 Query: 131 -VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189 ++ +F+ +L P + + Q + VY F K + + + LP RLTGP+ Sbjct: 121 GIVVHTFNGDLLYEPWEVYDEEGQAFTVYEAFWKKCMSMPFEPEAPLLP--PRRLTGPIG 178 Query: 190 PS--------NIPRFFDYPFQAI-DPMFPIGEQNALHILRKFCKEKVYYYVEQR---DIP 237 + F+ A+ + G A L F + + Y R D Sbjct: 179 KIVGCNAEELGLEDEFEKSSNALLARAWCPGWGFANKSLDSFLRSPLIDYARDRQKADGA 238 Query: 238 AIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLN----ELIWREFYRH 293 + TS LSP+L G LS R+ ++ +++ + + +G + +N L +RE+ R+ Sbjct: 239 SGTPTSLLSPHLHFGELSVRKIFHEVRKRQITWAREGNAGGEASVNMFLRALGFREYSRY 298 Query: 294 LMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRL 353 L +P + + + W D +AW+QG TG+P++DA MR+L GW HNR+ Sbjct: 299 LSFHFP-FTHERSLLANLKSFPWRADEGYFKAWRQGRTGYPLVDAGMRELWATGWAHNRI 357 Query: 354 RMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTI 413 R++ ASF VK L + WR G +YF LLD DL + GWQ+ + + D RI NP + Sbjct: 358 RVVVASFSVKFLQLPWRWGMKYFWDVLLDADLECDVLGWQYISGSLPDGHELDRIENPEV 417 Query: 414 QGKRFDPQGTFIRHWLPELNNVPTQYIH----APHSWLDKN--DLSLNYPLPIVD 462 +G RFDP G ++R W+PEL +P +++H AP S L +L NYP PIV+ Sbjct: 418 EGYRFDPDGDYVRRWIPELARLPNEWVHHPWDAPPSALRAAGVELGTNYPRPIVE 472 >gi|158335578|ref|YP_001516750.1| deoxyribodipyrimidine photolyase [Acaryochloris marina MBIC11017] gi|158305819|gb|ABW27436.1| deoxyribodipyrimidine photolyase [Acaryochloris marina MBIC11017] Length = 484 Score = 195 bits (496), Expect = 1e-47, Method: Compositional matrix adjust. Identities = 150/484 (30%), Positives = 240/484 (49%), Gaps = 53/484 (10%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQH-----GISARQSHFIYASL 65 L+W RNDLR+ D+ L+ A S+A VI + P Q+ Q ++ F+ S+ Sbjct: 4 LIWFRNDLRLHDHAPLHQAVR-SNADVIPCYCFDPRQFGQTPFGFPKTGPFRAQFLLESV 62 Query: 66 LQVQKSLSQKG---IVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKL 122 +++SL K I+ Q H + + + L +V +++NR+ E+ + Sbjct: 63 ADLRQSLRGKQSDLILRQGHPETVLPELAQAL-------KVETVYFNREVTAEEIEVENR 115 Query: 123 LEKRLQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPA 181 L L I C F S L P + ++ +V+T FRK + ++ P P Sbjct: 116 LRSALADLGIECLRFWSSTLFHPEQLPFPIRELPEVFTQFRKQVEKSAKPK--APFPTPQ 173 Query: 182 IRLTGP-VTPSNIPRFFDYPFQAIDP------MFPIGEQNALHILRKFC--KEKVYYYVE 232 T P + P +P+ D+ + +P F GE AL L+ + ++++ Y E Sbjct: 174 SLSTLPDIAPGELPQLEDWGLSSPEPDARAMIQFSGGETAALARLQDYIWEQDRLKRYKE 233 Query: 233 QRD-IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWL-NELIWREF 290 R+ + +++ SP+L++G +SPR ++K D + K+ + WL ELIWR++ Sbjct: 234 TRNGMLQPNDSTKFSPWLALGCVSPRYIHQQVKTYEQDRV---KNNSTYWLIFELIWRDY 290 Query: 291 YRHLMA------FYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLN 344 +R + A F S G + W + + W+ G TGFP+IDA MR+L Sbjct: 291 FRFICAKHGKRVFRVSGLQGL-------ALPWQDNRETFEKWQTGQTGFPLIDANMRELA 343 Query: 345 TIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVP 404 G+M NR R ASFL K+L ++W++G E+F S L+D D+ SN G W +AA GND+ Sbjct: 344 ATGFMSNRGRQNVASFLTKNLGLNWQMGAEWFESCLIDYDVCSNWGNWNYAAGVGNDARG 403 Query: 405 YFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAP--HSWLDKNDLSL----NYPL 458 FR FN Q K +DPQG ++RHWLPEL +VP + P + L++ L +YP Sbjct: 404 -FRFFNIVKQAKDYDPQGDYVRHWLPELKDVPGGQVQTPWQLTALEQEMFGLTIGKDYPE 462 Query: 459 PIVD 462 P+VD Sbjct: 463 PMVD 466 >gi|18026276|gb|AAL16377.1| cryptochrome 2 [Arabidopsis thaliana] gi|18026278|gb|AAL16378.1| cryptochrome 2 [Arabidopsis thaliana] gi|166007539|gb|ABY77603.1| At1g04400 [Arabidopsis thaliana] Length = 612 Score = 195 bits (496), Expect = 1e-47, Method: Compositional matrix adjust. Identities = 151/488 (30%), Positives = 236/488 (48%), Gaps = 58/488 (11%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 +VW R DLRI DN AL AA H + V VFI PE+ Q ++ SL + + Sbjct: 8 IVWFRRDLRIEDNPALAAAAH--EGSVFPVFIWCPEEEGQFYPGRASRWWMKQSLAHLSQ 65 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQ-QRVTKLFYNRQYEINEVRRDKLLEKRLQH 129 SL G + N +I LD C++ TK+ +N Y+ + RD ++++L Sbjct: 66 SLKALGSDLTLIKTHNTISAI--LD--CIRVTGATKVVFNHLYDPVSLVRDHTVKEKLVE 121 Query: 130 RVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADL-----RSLPVPAIR 183 R I +S++ +L P I + + + + K + +++ + R +P+ A Sbjct: 122 RGISVQSYNGDLLYEPWEIYCEKGKPFTSFNSYWKKCLDMSIESVMLPPPWRLMPITAAA 181 Query: 184 ---LTGPVTPSNIPRFFDYPFQAI-DPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAI 239 + + + P A+ + G NA +L +F ++++ Y + Sbjct: 182 EAIWACSIEELGLENEAEKPSNALLTRAWSPGWSNADKLLNEFIEKQLIDYAKNSKKVVG 241 Query: 240 QGTSQLSPYLSIGVLSPR---QC-------WNRLK----EEFVDLLIKPKSGAFSWLNEL 285 TS LSPYL G +S R QC W R K EE DL ++ + Sbjct: 242 NSTSLLSPYLHFGEISVRHVFQCARMKQIIWARDKNSEGEESADLFLRG----------I 291 Query: 286 IWREFYRHLMAFYP-----SVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAM 340 RE+ R++ +P S+ F PW + D +AW+QG TG+P++DA M Sbjct: 292 GLREYSRYICFNFPFTHEQSLLSHLRFFPW------DADVDKFKAWRQGRTGYPLVDAGM 345 Query: 341 RQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGN 400 R+L GWMHNR+R+I +SF +K LL+ W+ G +YF LLD DL + GWQ+ + + Sbjct: 346 RELWATGWMHNRIRVIVSSFAMKFLLLPWKWGMKYFWDTLLDADLECDILGWQYISGSIP 405 Query: 401 DSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIH----APHSWLDKN--DLSL 454 D R+ NP +QG ++DP+G +IR WLPEL +PT++IH AP + L + +L Sbjct: 406 DGHELDRLDNPALQGAKYDPEGEYIRQWLPELARLPTEWIHHPWDAPLTVLKASGVELGT 465 Query: 455 NYPLPIVD 462 NY PIVD Sbjct: 466 NYAKPIVD 473 >gi|78217443|gb|ABB36797.1| cryptochrome 2 [Nicotiana sylvestris] Length = 641 Score = 195 bits (496), Expect = 1e-47, Method: Compositional matrix adjust. Identities = 160/497 (32%), Positives = 241/497 (48%), Gaps = 73/497 (14%) Query: 8 SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67 S +VW R DLRI DN AL AA N V VFI +P++ Q ++ SL+ Sbjct: 5 SKTIVWFRRDLRIEDNPALAAAARN--GSVFPVFIWSPKEEGQFYPGRVSRWWLKQSLIH 62 Query: 68 VQKSLSQKG----IVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLL 123 +++SL G ++ S D IE + + TK+ YN Y+ + RD + Sbjct: 63 LEQSLKSLGAELVLIKAQSTLSALLDCIEAVGA-------TKVVYNHLYDPVSLVRDHNI 115 Query: 124 EKRLQHRVICKSFDDSVLLPPGSILNHALQMY----KVYTPF----RKALIQNLVQADLR 175 +++L I SV G +LN ++Y KV+T F K+L L + + Sbjct: 116 KQKLGELGI------SVQSYNGDLLNEPWEVYDDDGKVFTTFDAYWEKSL--RLQKEPVS 167 Query: 176 SLP----VPAIRLTGPVTPSNIPRFF------DYPFQAIDPMFPIGEQNALHILRKFCKE 225 LP +PA G V ++ + + G NA L +F + Sbjct: 168 HLPPWKLIPA---AGSVKMCSVEELGLENESEKSSNALLGKGWAPGWSNADKALTEFVEN 224 Query: 226 KVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWN--RLKEEFVDLLIKPKSG------ 277 ++ Y + R TS LSPYL G +S R+ +N RLK+ ++ K G Sbjct: 225 QLLAYSKDRLRVGGNSTSLLSPYLHFGEVSVRKVFNSVRLKQ-----ILWTKEGNSVGDE 279 Query: 278 -AFSWLNELIWREFYRHLMAFYP-----SVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYT 331 A +L + RE+ R++ +P S+ F PW N D +AW+QG T Sbjct: 280 SASLYLRAIGLREYSRYICFNFPFTHERSLLNNLKFFPW------NADQARFKAWRQGRT 333 Query: 332 GFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGG 391 G+P++DA MR+L GW+HN++R+I ASF VK LL+ W+ G +YF LLD DL S+ G Sbjct: 334 GYPLVDAGMRELWATGWIHNKIRVIVASFFVKFLLLPWQWGMKYFWDTLLDADLESDIIG 393 Query: 392 WQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIH----APHSWL 447 WQ+ + + D R+ NP +QG +DP+G ++RHWLPEL +P ++IH AP + L Sbjct: 394 WQYISGSLPDGHELERLDNPEVQGFNYDPEGEYVRHWLPELARMPAEWIHHPWDAPLTVL 453 Query: 448 DKN--DLSLNYPLPIVD 462 +L +NYP PI+D Sbjct: 454 KAAGVELGMNYPNPIID 470 >gi|1468977|gb|AAB04997.1| AT-PHH1 [Arabidopsis thaliana] Length = 612 Score = 195 bits (495), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 152/488 (31%), Positives = 235/488 (48%), Gaps = 58/488 (11%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 +VW R DLRI DN AL AA H + V VFI PE+ Q ++ SL + + Sbjct: 8 IVWFRRDLRIEDNPALAAAAH--EGSVFPVFIWCPEEEGQFYPGRASRWWMKQSLAHLSQ 65 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQ-QRVTKLFYNRQYEINEVRRDKLLEKRLQH 129 SL G Q N +I LD C++ TK+ +N Y+ + RD ++++L Sbjct: 66 SLKALGSDLTLIQTHNTISAI--LD--CIRVTGPTKVVFNHLYDPVSLVRDHTVKEKLVE 121 Query: 130 RVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADL-----RSLPVPAIR 183 R I +S++ +L P I + + + + K + +++ + R +P+ A Sbjct: 122 RGISVQSYNGDLLYEPWEIYCEKGKPFTSFNSYWKKCLDMSIESVMLPPPWRLMPITAAA 181 Query: 184 ---LTGPVTPSNIPRFFDYPFQAI-DPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAI 239 + + + P A+ + G NA +L +F ++++ Y + Sbjct: 182 EAIWACSIEELGLENEAEKPSNALLTRAWSPGWSNADKLLNEFIEKQLIDYAKNSKKVVG 241 Query: 240 QGTSQLSPYLSIGVLSPR---QC-------WNRLK----EEFVDLLIKPKSGAFSWLNEL 285 TS LSPYL G +S R QC W R K EE DL ++ + Sbjct: 242 NSTSLLSPYLHFGEISVRHVFQCARMKQIIWARDKNSEGEESADLFLRG----------I 291 Query: 286 IWREFYRHLMAFYP-----SVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAM 340 RE+ R++ +P S+ F PW + D +AW+QG TG+P++DA M Sbjct: 292 GLREYSRYICFNFPFTHEQSLLSHLRFFPW------DADVDKFKAWRQGRTGYPLVDAGM 345 Query: 341 RQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGN 400 R+L GWMHNR+R+I +SF VK LL+ W+ G +YF L D DL + GWQ+ + + Sbjct: 346 RELWATGWMHNRIRVIVSSFAVKFLLLPWKWGMKYFWDTLXDADLECDILGWQYISGSIP 405 Query: 401 DSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIH----APHSWLDKN--DLSL 454 D R+ NP +QG ++DP+G +IR WLPEL +PT++IH AP + L + +L Sbjct: 406 DGHELDRLDNPALQGAKYDPEGEYIRQWLPELARLPTEWIHHPWDAPLTVLKASGVELGT 465 Query: 455 NYPLPIVD 462 NY PIVD Sbjct: 466 NYAKPIVD 473 >gi|45935260|gb|AAS79665.1| cryptochrome 2A apoprotein [Pisum sativum] gi|45935262|gb|AAS79666.1| cryptochrome 2A apoprotein [Pisum sativum] Length = 629 Score = 194 bits (494), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 148/474 (31%), Positives = 227/474 (47%), Gaps = 33/474 (6%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 +VW R DLRI DN AL AA D V VFI P++ Q ++ SL + + Sbjct: 7 IVWFRRDLRIEDNPALAAAAR--DGSVFPVFIWCPKEEGQFYPGRVSRWWLKQSLAHLDQ 64 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYE-INEVRRDKLLEKRLQH 129 SL G + D ++ L + TK+ +N Y+ ++ VR + EK ++ Sbjct: 65 SLKSLGAKLVLIKT---DSTLNALLECVNAIQATKVVFNHLYDPVSLVRDHNIKEKLVEL 121 Query: 130 RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189 + KS++ +L P + + + + PF + + ++ P I G V Sbjct: 122 GISVKSYNGDLLYEPWELYDEKGHAFTTFDPFWERCLHKQMEPVSLIPPWQLIPAKGKVE 181 Query: 190 PSNIPRF-----FDYPFQAI-DPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS 243 +I + P A+ + G NA L +F +++ Y + R TS Sbjct: 182 RCSIEDLGLENELEKPSNALLGRAWSPGWGNANKALTEFMDKQLLNYSKNRQKVGGDSTS 241 Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKS-GAFS---WLNELIWREFYRHLMAFYP 299 LSPYL G LS R+ + + + + + S G S +L + RE+ R+L +P Sbjct: 242 LLSPYLHFGELSVRKVFQMARVKQISWGNEGNSVGKESVTLFLRAIGLREYSRYLCFNFP 301 Query: 300 ----SVCMGK-PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLR 354 +G F PW N D + W+QG TG+P++DA MR+L GWMHNR+R Sbjct: 302 FTHERALLGHLSFFPW------NADPSNFKTWRQGRTGYPLVDAGMRELWATGWMHNRIR 355 Query: 355 MITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQ 414 +I +SF VK LL+ W+ G +YF LLD DL + GWQ+ + D R+ +P I Sbjct: 356 VIVSSFAVKMLLLPWKWGMKYFWDTLLDADLECDILGWQYISGCLPDGHELERLDDPEIL 415 Query: 415 GKRFDPQGTFIRHWLPELNNVPTQYIH----APHSWLDKNDLSL--NYPLPIVD 462 G +FDP+G ++R WLPEL +PT++IH AP S L + + L NYP PI+D Sbjct: 416 GAKFDPEGEYVRQWLPELARMPTEWIHHPWNAPLSVLRASGVELGQNYPNPIID 469 >gi|329941848|ref|ZP_08291113.1| deoxyribodipyrimidine photolyase [Streptomyces griseoaurantiacus M045] gi|329299565|gb|EGG43465.1| deoxyribodipyrimidine photolyase [Streptomyces griseoaurantiacus M045] Length = 468 Score = 194 bits (494), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 141/464 (30%), Positives = 216/464 (46%), Gaps = 56/464 (12%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISA------RQSHF 60 M +V DLR+ D+ L AA + A V+ +F+ R + A + F Sbjct: 1 MHTSVVLFTADLRLHDHPPLRAALDRASA-VVPLFV------RDRAVDAAGFAVPNRLAF 53 Query: 61 IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120 + L + L ++G D +E + + ++ + RR+ Sbjct: 54 LADCLRDLDAGLRERGGRLVVRSG----DLVEEVCRVAAEADAGEVHMASDVSAHAHRRE 109 Query: 121 KLLEKRLQHRVICKSFDDSV--LLPPGSILNHALQMYKVYTPFRKALIQNLVQADL---R 175 L L+ D+V + PGS+ + V+TP+ + + ++ L R Sbjct: 110 DRLRTALEAVGRGLVVHDTVTTVRAPGSVTPGGRDHFAVFTPYFRRWSEQRTRSVLDAPR 169 Query: 176 SLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFP-IGEQNALHILRKFCKE--------- 225 +PVP G P + D + P GE+ L + + Sbjct: 170 RVPVPEG--IGSEEPPDRRELSD-----LSPGLARGGEREGRARLAAWLRGGSGDGKGAG 222 Query: 226 ---KVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWL 282 V Y ++ D A TS+LSP+L G LSP + ++E L P GA +++ Sbjct: 223 VVGDVGEYEDRHDDLAGDATSRLSPHLHFGTLSPVEV---VRE--AGGLGGP--GAEAFV 275 Query: 283 NELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDS---HLLQAWKQGYTGFPIIDAA 339 +L WR+F+R ++A P+ T W + +QAW++G TG+P++DAA Sbjct: 276 RQLAWRDFHRQVLAARPAAAHEDYR---TRHDRWRTERAAREEVQAWREGRTGYPVVDAA 332 Query: 340 MRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTG 399 MRQL GWMHNR R++TASFL K L VDWR+G +F+ L+DGDLA+N WQW A TG Sbjct: 333 MRQLRHEGWMHNRGRLLTASFLAKTLYVDWRVGARHFLDLLVDGDLANNQMNWQWVAGTG 392 Query: 400 NDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAP 443 DS P R+ NP +QG+RFDP+G ++R W+PEL VP +H P Sbjct: 393 TDSRPN-RVLNPVVQGRRFDPEGAYVRRWVPELAEVPGAGVHEP 435 >gi|113477930|ref|YP_723991.1| deoxyribodipyrimidine photo-lyase type I [Trichodesmium erythraeum IMS101] gi|110168978|gb|ABG53518.1| Deoxyribodipyrimidine photo-lyase type I [Trichodesmium erythraeum IMS101] Length = 498 Score = 194 bits (493), Expect = 3e-47, Method: Compositional matrix adjust. Identities = 156/510 (30%), Positives = 257/510 (50%), Gaps = 55/510 (10%) Query: 6 AMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGIS-----ARQSHF 60 + +V ++W RNDLRI D++ LY A +A++I ++ P Q+ Q ++ F Sbjct: 2 SQNVIILWYRNDLRIHDHEPLYKAL-KVNAQIIPIYCLDPRQFSQTDFGFPKTGVFRAKF 60 Query: 61 IYASLLQVQKSLSQKG---IVFQYHQCSNFDDSIEWLDSYCLQQRVTK-LFYNRQYEINE 116 + S+ ++ +L + G ++FQ D E + QQ K +F++++ E Sbjct: 61 LLESIADLRNNLQKLGSNLVIFQ--------DKPEIVIPRLAQQLSAKSVFFHQEVTELE 112 Query: 117 VRRDKLLEKRL-QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLR 175 V+ ++L+ + L Q V KSF L P + Q+ +++T FRK + +N Sbjct: 113 VKVERLVHQALKQIGVRLKSFWGHTLYHPDDLPFEIKQLPELFTTFRKDVEKNSSVNPTF 172 Query: 176 SLP-----VPAIRLTGPVTPSNIPRFFDYPFQAIDPM-FPIGEQNALHILRKFCKEKVYY 229 S+P +P I + T S++ P + + F GE A ++ + ++ Y Sbjct: 173 SIPKKLSSLPKIDVGELPTLSDL-NLEKPPLNSQGVLEFKGGETAAKERVKNYFWQQDYL 231 Query: 230 YVEQRDIPAIQG---TSQLSPYLSIGVLSPRQCWNRLKE-EFVDLLIKPKSGAFSWL-NE 284 V + + G +S+ SP+L++G LSPR + +KE E+ + K+ + WL E Sbjct: 232 KVYKETRNGMLGANYSSKFSPWLALGCLSPRYIYEEVKEYEYQRV----KNQSTYWLIFE 287 Query: 285 LIWREFYRHLMA------FYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDA 338 LIWR+++R + F+ S G IPW E +W K + W+ G TGFP++DA Sbjct: 288 LIWRDYFRFICQKHGNKIFHKSGLQGIA-IPWQE--DWEK----FRKWQAGQTGFPLVDA 340 Query: 339 AMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAAST 398 MR+L G+M NR R ASFL K+L ++W++G E+F S L+D D+ SN G W + A Sbjct: 341 NMRELLATGFMSNRGRQNVASFLTKNLGINWQMGAEWFESLLIDYDVCSNWGNWNYTAGV 400 Query: 399 GNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND------L 452 GND FR FN Q K +DP+G +++HWLPEL VP +H P L + Sbjct: 401 GNDGRG-FRYFNIPKQAKDYDPEGKYVKHWLPELGKVPPAKVHEPWKLLPVEQDRFGVKI 459 Query: 453 SLNYPLPIVDHKKACHHTLNQYYAAKKQSL 482 ++YP PI+D ++ +Y A + +L Sbjct: 460 GVDYPEPIIDLWQSVKENEKKYNRALQMTL 489 >gi|1468975|gb|AAB04996.1| AT-PHH1 [Arabidopsis thaliana] Length = 612 Score = 194 bits (493), Expect = 3e-47, Method: Compositional matrix adjust. Identities = 152/488 (31%), Positives = 235/488 (48%), Gaps = 58/488 (11%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 +VW R DLRI DN AL AA H + V VFI PE+ Q ++ SL + + Sbjct: 8 IVWFRRDLRIEDNPALAAAAH--EGSVFPVFIWCPEEEGQFYPGRASRWWMKQSLAHLSQ 65 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQ-QRVTKLFYNRQYEINEVRRDKLLEKRLQH 129 SL G Q N +I LD C++ TK+ +N Y+ + RD ++++L Sbjct: 66 SLKALGSDLTLIQTHNTISAI--LD--CIRVTGPTKVVFNHLYDPVSLVRDHTVKEKLVE 121 Query: 130 RVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADL-----RSLPVPAIR 183 R I +S++ +L P I + + + + K + +++ + R +P+ A Sbjct: 122 RGISVQSYNGDLLYEPWEIYCEKGKPFTSFNSYWKKCLDMSIESVMLPPPWRLMPITAAA 181 Query: 184 ---LTGPVTPSNIPRFFDYPFQAI-DPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAI 239 + + + P A+ + G NA +L +F ++++ Y + Sbjct: 182 EAIWACSIEELGLENEAEKPSNALLTRAWSPGWSNADKLLNEFIEKQLIDYAKNSKKVVG 241 Query: 240 QGTSQLSPYLSIGVLSPR---QC-------WNRLK----EEFVDLLIKPKSGAFSWLNEL 285 TS LSPYL G +S R QC W R K EE DL ++ + Sbjct: 242 NSTSLLSPYLHFGEISVRHVFQCARMKQIIWARDKNSEGEESADLFLRG----------I 291 Query: 286 IWREFYRHLMAFYP-----SVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAM 340 RE+ R++ +P S+ F PW + D +AW+QG TG+P++DA M Sbjct: 292 GLREYSRYICFNFPFTHEQSLLSHLRFFPW------DADVDKFKAWRQGRTGYPLVDAGM 345 Query: 341 RQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGN 400 R+L GWMHNR+R+I +SF VK LL+ W+ G +YF L D DL + GWQ+ + + Sbjct: 346 RELWATGWMHNRIRVIVSSFGVKFLLLPWKWGMKYFWDTLXDADLECDILGWQYISGSIP 405 Query: 401 DSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIH----APHSWLDKN--DLSL 454 D R+ NP +QG ++DP+G +IR WLPEL +PT++IH AP + L + +L Sbjct: 406 DGHELDRLDNPALQGAKYDPEGEYIRQWLPELARLPTEWIHHPWDAPLTVLKASGVELGT 465 Query: 455 NYPLPIVD 462 NY PIVD Sbjct: 466 NYAKPIVD 473 >gi|282916029|ref|ZP_06323792.1| deoxyribodipyrimidine photo-lyase [Staphylococcus aureus subsp. aureus D139] gi|283769853|ref|ZP_06342745.1| deoxyribodipyrimidine photo-lyase [Staphylococcus aureus subsp. aureus H19] gi|282319977|gb|EFB50324.1| deoxyribodipyrimidine photo-lyase [Staphylococcus aureus subsp. aureus D139] gi|283460000|gb|EFC07090.1| deoxyribodipyrimidine photo-lyase [Staphylococcus aureus subsp. aureus H19] Length = 457 Score = 194 bits (493), Expect = 3e-47, Method: Compositional matrix adjust. Identities = 125/348 (35%), Positives = 181/348 (52%), Gaps = 34/348 (9%) Query: 142 LPPGSILNHALQMYKVYTPFRKA-----LIQNLVQADLRSLPVPAIRLTGPVTPSNIPRF 196 +N + YKV+T F K I+++ DL L I P+N+ Sbjct: 129 FKASKTMNKQGEPYKVFTSFYKKWRPYLRIRDVYHYDLNELIDIVI-----AAPNNLK-- 181 Query: 197 FDYPFQAIDPMFPIGEQNALHILR--KFCKEKVYYYVEQRD-IPAIQGTSQLSPYLSIGV 253 D G A + +F + + Y R+ +P I TSQLS L+ G+ Sbjct: 182 --------DVQIDAGSSQAHEQEKWQQFLEHDIQNYENGREYLPEIL-TSQLSIALAYGL 232 Query: 254 LSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEK 313 L + +N L + + +S +++ ELI+REFY LM YP + F P Sbjct: 233 LDIIEIFNDLLARYEE----DESNYEAFIRELIFREFYYVLMTQYPESA-HQSFKPKYRH 287 Query: 314 IEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGE 373 I W+++ +AW G TGFPIIDAAM +L G+MHNR+RM+ + FL KDL ++W GE Sbjct: 288 INWSENEADFKAWCDGQTGFPIIDAAMMELRQTGFMHNRMRMVVSQFLTKDLFINWTWGE 347 Query: 374 EYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELN 433 ++F L+D D SN GWQW+ASTG D+VPYFR+FNP Q +RFDP+ +I+ +LP LN Sbjct: 348 DFFRKYLIDYDATSNVHGWQWSASTGTDAVPYFRMFNPIRQSERFDPKALYIKTYLPVLN 407 Query: 434 NVPTQYIHAPH---SWLDKNDLSL--NYPLPIVDHKKACHHTLNQYYA 476 + +Y+H H S L K + L +YP IVDH++ L + A Sbjct: 408 QIDAKYLHDTHRNESELFKQGIELGRHYPKQIVDHQEKRSQVLATFKA 455 >gi|21327675|gb|AAC37438.2| CPH1 [Chlamydomonas reinhardtii] Length = 1008 Score = 194 bits (493), Expect = 3e-47, Method: Compositional matrix adjust. Identities = 143/483 (29%), Positives = 233/483 (48%), Gaps = 41/483 (8%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 +VW R DLR+ D+ A + VI VFI PE+ Q + SL+ +Q+ Sbjct: 9 VVWFRRDLRV-DDNPALVAALAAAPNVIPVFIWAPEEEGQFQPGRCSRWWSKHSLVDLQQ 67 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130 +L+ G + + DS L + +F+N Y+ + RD ++ L Sbjct: 68 ALAALGSRLVIRRST---DSTAALLQLVTELGAEAVFFNHLYDPISLMRDHDCKRGLTAA 124 Query: 131 VIC-KSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVP-----AIRL 184 + ++F+ +L P +L+ Q Y + F ++ R++PVP + Sbjct: 125 GVAHRTFNGDMLYEPWDVLDPNKQPYSTFDDFWNSV---------RAMPVPPPFPVSAPA 175 Query: 185 TGPVTPSNIPR--------FFDYPFQAIDPMFPI----GEQNALHILRKFCKEKVYYYVE 232 + P P+ +P FF +A G A+ L F E++ + Sbjct: 176 SMPAVPAAVPSMTVAEVDWFFTPEQEASSDQLKFKWKPGVGGAISELEHFLAERLTEFEH 235 Query: 233 QRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFS---WLNELIWRE 289 R TS+LSP++ IG +S R + R+++ + L A S +L ++ +RE Sbjct: 236 DRAKVDRDSTSRLSPWIHIGSISVRYIFYRVRQCQAEWLAAGTDRAQSCDDFLQQMGYRE 295 Query: 290 FYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWM 349 + R+L +P + + + W D H +AW+QG TG+PI+DAAMRQL + GW Sbjct: 296 YSRYLAFHFPFIHE-RSLLGHLRACPWRIDQHAFKAWRQGQTGYPIVDAAMRQLWSSGWC 354 Query: 350 HNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIF 409 HNR R++ ASFLVKDLL+ W+ G +++ +D DL + GWQ+ + +D+ P+ + Sbjct: 355 HNRGRVVAASFLVKDLLLPWQWGLKHYWDAQIDADLECDALGWQYVSGGMSDAHPFSYMM 414 Query: 410 NPTIQGKRFDPQGTFIRHWLPELNNVPTQYIH----APHSWLDKNDLSL--NYPLPIVDH 463 + + +RFDP G ++R WLP L+ +PT+YIH AP S L D+ L NYPLPI+ Sbjct: 415 DLEKEARRFDPDGEYVRRWLPALSRLPTEYIHAPWKAPASVLAAADVELGCNYPLPIITR 474 Query: 464 KKA 466 A Sbjct: 475 SDA 477 >gi|54025035|ref|YP_119277.1| putative deoxyribodipyrimidine photolyase [Nocardia farcinica IFM 10152] gi|54016543|dbj|BAD57913.1| putative deoxyribodipyrimidine photolyase [Nocardia farcinica IFM 10152] Length = 436 Score = 194 bits (492), Expect = 3e-47, Method: Compositional matrix adjust. Identities = 143/455 (31%), Positives = 217/455 (47%), Gaps = 41/455 (9%) Query: 17 DLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISAR----QSHFIYASLLQVQKSL 72 DLR+ DN L AA DA V+ +F+ H + R ++ F+ A++ ++ L Sbjct: 10 DLRVHDNPVLAAARDAGDA-VVPLFVID-----AHLVPDRCPPNRARFLAAAVRELDAEL 63 Query: 73 SQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHRVI 132 +G + D+ +D + T + + R D L E+ + V Sbjct: 64 RTRGGRLIVRRGVVADEVARVVDETGAR---TVHLADDVSGYSAARADALRERLDRRGVR 120 Query: 133 CKSFDDSVLLPPGSILNHAL--QMYKVYTPFRKALIQNLVQADL---RSLPVPAIRLTGP 187 + S+ G +L A + V+TP+ + + +A L L VP + Sbjct: 121 LEPHPASITTVDGDVLRPATGRDHFAVFTPYFRRWSEVPRRAPLPPPEDLEVPDLPSAAL 180 Query: 188 VTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSP 247 TP ++ R P ++ GE +L + V YVE D A TS LSP Sbjct: 181 PTPESLNRGEPSPQLSVG-----GETTGRALLDSWLAGPVDDYVETGDDLAADATSHLSP 235 Query: 248 YLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPF 307 YL G LSP + +R VD+ +G ++ +L WR+F+ L+A P+V + Sbjct: 236 YLHFGCLSPTELLHR-----VDVG---SAGGQAFARQLAWRDFHHQLLAARPAVARHD-Y 286 Query: 308 IPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLV 367 P I W D L AW+ TG+PI+DAA+RQL+T GW+ NR R+I A+FL K L + Sbjct: 287 RP--RPIRWRDDPQALAAWRSARTGYPIVDAALRQLHTEGWLPNRARLIAAAFLTKTLGL 344 Query: 368 DWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRH 427 WR G +F+ L+D DLA+N WQW A TG+D+ P R FNP Q R+DP G ++R Sbjct: 345 HWRAGAGHFLHWLVDADLANNQLNWQWVAGTGSDTRPN-RGFNPLRQADRYDPDGVYVRR 403 Query: 428 WLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVD 462 W+PEL ++ IH P W + ++YP PI + Sbjct: 404 WIPELADLDGGRIHRP--WRAE----VDYPSPIAE 432 >gi|88811682|ref|ZP_01126936.1| DNA photolyase, Cryptochrome 1 apoprotein (Blue light photoreceptor) [Nitrococcus mobilis Nb-231] gi|88791073|gb|EAR22186.1| DNA photolyase, Cryptochrome 1 apoprotein (Blue light photoreceptor) [Nitrococcus mobilis Nb-231] Length = 479 Score = 194 bits (492), Expect = 3e-47, Method: Compositional matrix adjust. Identities = 141/490 (28%), Positives = 224/490 (45%), Gaps = 35/490 (7%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 L W R DLR+ D+ L AC + VI VFI P+ + A + ++ ++ Sbjct: 8 LFWFRRDLRLADHPGL-VACQAARVPVIPVFILDPQT---EALGAAAKWRLGLAIASFRE 63 Query: 71 SLSQKG--IVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128 L G ++ + + C ++ ++R Y + + RD+ ++ L+ Sbjct: 64 RLQAIGSDLILRRGPAKETLLELLEETGAC------EVHWSRNYTPDAIERDQEVKTALK 117 Query: 129 HRVI-CKSFDDSVLLPPGSILNHALQMYKVYTP----FRKALIQNLVQADLRSLPVPAI- 182 S L+ P ++ A ++VY+P FR I +V ++ +LP PA+ Sbjct: 118 RAGRHALSHPGHTLIEPWAVSPAASDHFRVYSPYWRAFRTIEIAPVVP-EIEALPAPALW 176 Query: 183 RLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGT 242 + + + + + + +GEQ AL F E Y RD + T Sbjct: 177 PRSDNLAGWRLDAAMNRGAEVVARYACVGEQAALERFAAFLDEPWSAYRNGRDRLDLAAT 236 Query: 243 SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVC 302 S LS L+ G +SPR W+ + D + G ++L EL+WREF HL+ P + Sbjct: 237 SLLSENLTYGEISPRTIWHGVCASGGDQ----EQGGETFLKELVWREFSYHLLYHTPHIT 292 Query: 303 MGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLV 362 W W D+ W++G TG P+IDAAMRQ+ G MHNR RM+ AS+L Sbjct: 293 QRNWRAEWN-AFPWRGDNEQAARWRKGLTGEPVIDAAMRQMYVTGTMHNRARMLVASYLT 351 Query: 363 KDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQG 422 K L+ W+IG ++F L+D D A+N GWQW A +G D+ P+FR+FNP Q ++FDP Sbjct: 352 KHLMTHWKIGMDWFAQCLIDWDPAANALGWQWVAGSGPDAAPFFRVFNPATQAEKFDPDA 411 Query: 423 TFIRHWLPEL-----NNVPTQYIHA-PHSWLDKNDLSLNYP-LPIVDHKKACHHTLN--Q 473 + R ++ EL Y A P W D YP P+++ K+ L Q Sbjct: 412 VYRRRYVAELAGDNPGEAALAYFDACPRHW--SLDPEQKYPEAPLIELKRGRERALEAYQ 469 Query: 474 YYAAKKQSLL 483 +Y K + ++ Sbjct: 470 HYVVKNKPII 479 >gi|16416405|dbj|BAB70665.1| blue-light receptor cryptochrome [Physcomitrella patens] Length = 727 Score = 194 bits (492), Expect = 3e-47, Method: Compositional matrix adjust. Identities = 143/475 (30%), Positives = 227/475 (47%), Gaps = 31/475 (6%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 +VW R DLR+ DN AL AA V+ VF+ +P + Q ++ SL ++ Sbjct: 6 IVWFRRDLRLEDNPALIAAARA--GTVVPVFVWSPAEDGQFHPGRVSRWWLKQSLTHLEL 63 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130 SL + G + D + L T++FYN Y+ + RD +++ L R Sbjct: 64 SLKKLGSPLILRKSP---DMLSVLLEIAEATGATQVFYNHLYDPVSLVRDHRVKQGLSQR 120 Query: 131 -VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189 ++ +F+ +L P + + Q + VY F K + + + LP RLTGP+ Sbjct: 121 GIVVHTFNGDLLYEPWEVYDEEGQAFTVYEAFWKKCMSMPFEPEAPLLP--PRRLTGPIG 178 Query: 190 PS--------NIPRFFDYPFQAI-DPMFPIGEQNALHILRKFCKEKVYYYVEQR---DIP 237 + F+ A+ + G A L F + + Y R D Sbjct: 179 KIVGCNAEELGLEDEFEKSSNALLARAWCPGWGFANKSLDSFLRSPLIDYARDRQKADGA 238 Query: 238 AIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLN----ELIWREFYRH 293 + TS LSP+L G LS R+ ++ +++ + + +G + +N L +RE+ R+ Sbjct: 239 SGTPTSLLSPHLHFGELSVRKIFHEVRKRQITWAREGNAGGEASVNMFLRALGFREYSRY 298 Query: 294 LMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRL 353 L +P + + + W D +AW+QG TG+P++DA MR+L GW HNR+ Sbjct: 299 LSFHFP-FTHERSLLANLKSFPWRADEGYFKAWRQGRTGYPLVDAGMRELWATGWAHNRI 357 Query: 354 RMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTI 413 R++ ASF VK L + WR G +YF LLD DL + GWQ+ + + D RI NP + Sbjct: 358 RVVVASFSVKFLQLPWRWGMKYFWDVLLDADLECDVLGWQYISGSLPDGHELDRIENPEV 417 Query: 414 QGKRFDPQGTFIRHWLPELNNVPTQYIH----APHSWLDKN--DLSLNYPLPIVD 462 +G RFDP G ++R W+PEL +P +++H AP S L +L NYP PIV+ Sbjct: 418 EGYRFDPDGDYVRRWIPELARLPNEWVHHPWDAPPSALRAAGVELGTNYPRPIVE 472 >gi|159487060|ref|XP_001701553.1| cryptochrome photoreceptor [Chlamydomonas reinhardtii] gi|158271494|gb|EDO97311.1| cryptochrome photoreceptor [Chlamydomonas reinhardtii] Length = 1008 Score = 193 bits (491), Expect = 4e-47, Method: Compositional matrix adjust. Identities = 143/483 (29%), Positives = 233/483 (48%), Gaps = 41/483 (8%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 +VW R DLR+ D+ A + VI VFI PE+ Q + SL+ +Q+ Sbjct: 9 VVWFRRDLRV-DDNPALVAALAAAPNVIPVFIWAPEEEGQFQPGRCSRWWSKHSLVDLQQ 67 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130 +L+ G + + DS L + +F+N Y+ + RD ++ L Sbjct: 68 ALAALGSRLVIRRST---DSTAALLQLVTELGAEAVFFNHLYDPISLMRDHDCKRGLTAA 124 Query: 131 VIC-KSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVP-----AIRL 184 + ++F+ +L P +L+ Q Y + F ++ R++PVP + Sbjct: 125 GVAHRTFNGDMLYEPWDVLDPNKQPYSTFDDFWNSV---------RAMPVPPPFPVSAPA 175 Query: 185 TGPVTPSNIPR--------FFDYPFQAIDPMFPI----GEQNALHILRKFCKEKVYYYVE 232 + P P+ +P FF +A G A+ L F E++ + Sbjct: 176 SMPAVPAAVPSMTVAEVDWFFTPEQEASSDQLKFKWKPGVGGAISELEHFLAERLTEFEH 235 Query: 233 QRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFS---WLNELIWRE 289 R TS+LSP++ IG +S R + R+++ + L A S +L ++ +RE Sbjct: 236 DRAKVDRDSTSRLSPWIHIGSISVRYIFYRVRQCQAEWLAAGTDRAQSCDDFLQQMGYRE 295 Query: 290 FYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWM 349 + R+L +P + + + W D H +AW+QG TG+PI+DAAMRQL + GW Sbjct: 296 YSRYLAFHFPFIHE-RSLLRHLRACPWRIDQHAFKAWRQGQTGYPIVDAAMRQLWSSGWC 354 Query: 350 HNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIF 409 HNR R++ ASFLVKDLL+ W+ G +++ +D DL + GWQ+ + +D+ P+ + Sbjct: 355 HNRGRVVAASFLVKDLLLPWQWGLKHYWDAQIDADLECDALGWQYVSGGMSDAHPFSYMM 414 Query: 410 NPTIQGKRFDPQGTFIRHWLPELNNVPTQYIH----APHSWLDKNDLSL--NYPLPIVDH 463 + + +RFDP G ++R WLP L+ +PT+YIH AP S L D+ L NYPLPI+ Sbjct: 415 DLEKEARRFDPDGEYVRRWLPALSRLPTEYIHAPWKAPASVLAAADVELGCNYPLPIITR 474 Query: 464 KKA 466 A Sbjct: 475 SDA 477 >gi|240047725|ref|YP_002961113.1| hypothetical protein MCJ_006150 [Mycoplasma conjunctivae HRC/581] gi|239985297|emb|CAT05310.1| HYPOTHETICAL Deoxyribodipyrimidine photo-lyase [Mycoplasma conjunctivae] Length = 434 Score = 193 bits (491), Expect = 4e-47, Method: Compositional matrix adjust. Identities = 130/431 (30%), Positives = 215/431 (49%), Gaps = 34/431 (7%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAK-VIAVFIATPEQWRQHG--ISARQSHFIYASL 65 +++ D+R+ DN L ++ + + FI +Q + S + F+ +L Sbjct: 1 MNIFLFHRDIRVEDNLGLLNLVEETNGENIFLFFIYNKKQLYEKNEYFSQKAFDFLNNAL 60 Query: 66 LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125 + + K ++ I Y + + IE + ++ +++ N+ + + RDK L++ Sbjct: 61 INLSKKVN---INLFYAE-----NEIEVFEEILQANKIERIYINKDWSDFALARDKDLKQ 112 Query: 126 RLQ-HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPV--PAI 182 Q + +I K F+D +L PG ILN++ YKV+TPF + LV+ +LP + Sbjct: 113 FCQKNNIIFKEFNDYLLFRPGDILNNSNSFYKVFTPFYNNCVSKLVE----NLPTVKKTL 168 Query: 183 RLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGT 242 + ++ F F+ FP L IL K ++ Y + R+ AI + Sbjct: 169 HFYTQIYKNSKSCSFLQEFKYFQTFFPNSIDQILEIL----KNNIHDYAKNRNNLAI-DS 223 Query: 243 SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVC 302 +++SP + G++S RQ + +E K+ + +LIWREFY H F S Sbjct: 224 NKISPAIRFGIISIRQLLLYVYQE-------TKNINHELIRQLIWREFYYHF-NFLASQT 275 Query: 303 MGKPFIPWTEK---IEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITAS 359 PW K +E+N+ L+ WK+G TGFP+IDAA+++L G+MHNR RM+ AS Sbjct: 276 NWNFGNPWNRKFYFLEYNQADEKLKLWKEGKTGFPLIDAAIQELLQTGFMHNRARMVVAS 335 Query: 360 FLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFD 419 FL K+L +DW GE++F L+D D N+ WQW A G D+ + RIFNP +Q K+FD Sbjct: 336 FLTKNLFIDWHEGEKFFAQHLIDYDPIINHHSWQWVAGCGVDAQLFTRIFNPILQQKKFD 395 Query: 420 PQGTFIRHWLP 430 +I +LP Sbjct: 396 SNNYYISKFLP 406 >gi|103486487|ref|YP_616048.1| deoxyribodipyrimidine photolyase [Sphingopyxis alaskensis RB2256] gi|98976564|gb|ABF52715.1| Deoxyribodipyrimidine photo-lyase type I [Sphingopyxis alaskensis RB2256] Length = 457 Score = 193 bits (491), Expect = 4e-47, Method: Compositional matrix adjust. Identities = 151/478 (31%), Positives = 231/478 (48%), Gaps = 56/478 (11%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFI---ATPEQWRQHGISARQSHFIYA 63 M+ L+WLR DLR+ D+ AL AA VI VFI TP W+ I A Q +++ Sbjct: 1 MTASLLWLRQDLRVHDHPALLAAIAGG--AVIPVFILDDETPGTWK---IGAAQRWWLHH 55 Query: 64 SLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD--K 121 SL + SL ++G + + ++ R+ + +R+ K Sbjct: 56 SLTALGASLKKRGSKLILRRGA----------AHTELARIARETGSRRIHATHAYEPWWK 105 Query: 122 LLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPA 181 E+RL + D + L P SI+N Y+V+TP+ + L+ ++ +P Sbjct: 106 HSEERLPTDIALVLHDGNYLAAPDSIVNGQGARYRVFTPWYRRLLDHMPPT------LPQ 159 Query: 182 IRLTGPVTPSNIPRFFDYPFQAIDPMFP----------IGEQNALHILRKFCKEKVYYYV 231 P++ PR D + P P GE+ A R + + + Y Sbjct: 160 AAPDAVPAPASWPRSDDLADWDLLPTRPNWAAGFGAWCPGEKGAWRAARDWL-DAIGDYK 218 Query: 232 EQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFY 291 +RD PA TS+LSP+L G +SPR W+ + E + +GA S+ +EL WRE Sbjct: 219 ARRDYPAQPATSRLSPHLHFGEISPRALWHAIGE-------RDDAGAESYRSELGWREHG 271 Query: 292 RHLMAFYPSVC--MGKPFI---PWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTI 346 +L+ P G+ W + ++D AW +G TG+P++DA MR+L Sbjct: 272 INLVDQMPDYADRNGRELFDRFAWRTGADADRD---FAAWTRGRTGYPVVDAGMRELWQT 328 Query: 347 GWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYF 406 GWMHNR+RM+TASFLVK LL+DWR GE +F LLD DL SN WQ+ A TG D+ + Sbjct: 329 GWMHNRVRMVTASFLVKHLLIDWRRGERWFWDTLLDADLGSNAMNWQYVAGTGVDAPVFS 388 Query: 407 RIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHK 464 RI +P +Q +RF ++R +PEL ++ I A H ++ + YP P++ H+ Sbjct: 389 RIMSPLLQCERF-AMADYVRAHVPELAHLSDAEIAASHG---RDSGAPGYPEPLIGHE 442 >gi|323463244|gb|ADX75397.1| deoxyribodipyrimidine photolyase, putative [Staphylococcus pseudintermedius ED99] Length = 474 Score = 193 bits (490), Expect = 6e-47, Method: Compositional matrix adjust. Identities = 119/337 (35%), Positives = 173/337 (51%), Gaps = 19/337 (5%) Query: 144 PGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQA 203 P N Q Y+++T F KA Q+L +S + + + FD + Sbjct: 131 PSKTFNQQHQPYQIFTYFYKANRQHLAHTPQKSTQLKQLAQYAAKGMNQSDLKFD---KH 187 Query: 204 IDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRL 263 D E A F ++ Y + D S LS YL+ G+L R+ N L Sbjct: 188 TDE-----EACARQSWNHFLNHEITLYSQLADDITRNNISGLSRYLAYGLLDIREVINHL 242 Query: 264 KEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLL 323 E + ++ S++ EL++REFY LM YP + F +EW++ Sbjct: 243 LEGYD----SDENSYESFIRELMFREFYYVLMTQYPDAAT-QSFSVKYRNMEWSERQSHF 297 Query: 324 QAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDG 383 +AWK G TG+PIIDAAM++L G+MHNRLRMI + FL K L ++W GE +F L+D Sbjct: 298 EAWKNGETGYPIIDAAMKKLLRTGYMHNRLRMIVSQFLTKHLFMNWTWGEAHFRRYLIDY 357 Query: 384 DLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAP 443 D ASN GWQW+ASTG D+VPYFR+FNP Q +RFD G FI+ L L +V +YIH P Sbjct: 358 DNASNVHGWQWSASTGTDAVPYFRMFNPIRQSERFDAMGDFIKEQLQILKDVKPKYIHNP 417 Query: 444 HSWLD------KNDLSLNYPLPIVDHKKACHHTLNQY 474 ++ + + +YP IV+HK++ + + Q+ Sbjct: 418 SQYVTAIQQNHQIKIGEDYPKAIVNHKESRDYVMQQF 454 >gi|82750393|ref|YP_416134.1| DNA photolyase [Staphylococcus aureus RF122] gi|82655924|emb|CAI80328.1| probable DNA photolyase [Staphylococcus aureus RF122] Length = 459 Score = 193 bits (490), Expect = 6e-47, Method: Compositional matrix adjust. Identities = 124/343 (36%), Positives = 180/343 (52%), Gaps = 34/343 (9%) Query: 142 LPPGSILNHALQMYKVYTPFRKA-----LIQNLVQADLRSLPVPAIRLTGPVTPSNIPRF 196 +N + YKV+T F K I+++ DL L I P+N+ Sbjct: 131 FKASKTMNQQGEPYKVFTSFYKKWRPYLRIRDVYHYDLNELIDIVI-----AAPNNLK-- 183 Query: 197 FDYPFQAIDPMFPIGEQNALHILR--KFCKEKVYYYVEQRD-IPAIQGTSQLSPYLSIGV 253 D G A + +F + + Y R+ +P I TSQLS L+ G+ Sbjct: 184 --------DVQIGAGSSQAHEQEKWQQFLEHDIQNYENGREYLPEIL-TSQLSIALAYGL 234 Query: 254 LSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEK 313 L + +N L + + +S +++ ELI+REFY LM YP + F P Sbjct: 235 LDIIEIFNDLLSRYEE----DESNYEAFIRELIFREFYYVLMTQYPESA-HQSFKPKYRH 289 Query: 314 IEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGE 373 I W+++ +AW G TGFPIIDAAM +L G+MHNR+RM+ + FL K+L ++W GE Sbjct: 290 INWSENEADFKAWCDGQTGFPIIDAAMMELRQTGFMHNRMRMVVSQFLTKNLFINWTWGE 349 Query: 374 EYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELN 433 ++F L+D D ASN GWQW+ASTG D+VPYFR+FNP Q +RFDP+ +I+ +LP LN Sbjct: 350 DFFRKYLIDYDSASNVHGWQWSASTGTDAVPYFRMFNPIRQSERFDPKALYIKTYLPVLN 409 Query: 434 NVPTQYIHAPH---SWLDKNDLSL--NYPLPIVDHKKACHHTL 471 + +Y+H H S L K + L +YP IVDH++ L Sbjct: 410 QIDAKYLHDTHQNESELFKQGIELGRHYPKQIVDHQEKRSQVL 452 >gi|157874739|ref|XP_001685786.1| DNA repair enzyme; Deoxyribodipyrimidine photolyase [Leishmania major strain Friedlin] gi|68128859|emb|CAJ06003.1| putative deoxyribodipyrimidine photolyase [Leishmania major strain Friedlin] Length = 541 Score = 193 bits (490), Expect = 6e-47, Method: Compositional matrix adjust. Identities = 155/541 (28%), Positives = 235/541 (43%), Gaps = 100/541 (18%) Query: 4 TTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAV---FIATP---EQWRQHGISARQ 57 T V L R DLR+ DN L A C + + I V F P ++ R Sbjct: 22 TEREEVALFLFRRDLRVVDNTGLQALCDEAVRRSIPVLPAFFFNPIQCDKKRNAYFGDAF 81 Query: 58 SHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQ------RVTKLFYNRQ 111 F SL+ + + G + + D CL++ V L +N Sbjct: 82 FQFFCESLVDLDGAAQLNGGLV----------CLRGSDEDCLRRIRDSGYEVKVLGFNED 131 Query: 112 YEINEVRRDKLLEKRL-QHRVICKSF-DDSVLLPPGSILNHALQMYKVYTPF-------- 161 Y + RD+LL + ++C + D L P ++ + Q Y V+TPF Sbjct: 132 YTPFALARDRLLRDYADKQGIVCVTGPHDYSLRPLDEVVKDSEQPYSVFTPFYNKFTAEH 191 Query: 162 -RKA---LIQNL--VQADLRSLPVPAIR--LTGP-VTPSNIPRFFDYPFQAIDPMFPIGE 212 RK L+ N+ VQA L S P + L P + +++P+ D+ G Sbjct: 192 ARKVAVPLMVNVSKVQAMLVSQPKKCLEHHLVDPALVYTHMPQVQDHG----------GR 241 Query: 213 QNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLI 272 + R C E++ Y + RD A TS LSP++ G +S R+ W+ + Sbjct: 242 TEGMK--RLACVERLKQYADVRDDIAGDRTSHLSPHMKCGTVSTREVWH--------ASV 291 Query: 273 KPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK--------------------PFIPWTE 312 + ++ +L+WREFY L P + G+ PF P + Sbjct: 292 QALGTGHAFTRQLVWREFYAMLAFTRPRLLQGQLNSFIGQQDIVKATQPKQNAPFQPLYD 351 Query: 313 KIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIG 372 +W+ + +A+K+G TG P++DAA+R L GW HNR R++ ++F VK L +DWR Sbjct: 352 NYKWSWKAEHFEAFKEGRTGVPLVDAAVRCLTATGWCHNRCRLVISNFAVKVLGIDWREC 411 Query: 373 EEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPEL 432 E +F + +D D+ASNNGGW W++ G D+ PYFR FN Q +RFDP FI W+PEL Sbjct: 412 ERWFATVAVDYDVASNNGGWLWSSGQGADAQPYFRTFNAFRQSERFDPDCKFIFQWVPEL 471 Query: 433 NNVPTQYIH--------------APHS-----WLDKNDLSLNYPLPIVDHKKACHHTLNQ 473 VP +H A HS + + +YP PIVD K A + + Sbjct: 472 AKVPPSVVHHWEEYCAKARGRATATHSRKRSGQVKAKEYPTSYPAPIVDIKAATKAIIEE 531 Query: 474 Y 474 + Sbjct: 532 F 532 >gi|302851497|ref|XP_002957272.1| Deoxyribodipyrimidine photolyase, class 1 [Volvox carteri f. nagariensis] gi|300257367|gb|EFJ41616.1| Deoxyribodipyrimidine photolyase, class 1 [Volvox carteri f. nagariensis] Length = 914 Score = 193 bits (490), Expect = 7e-47, Method: Compositional matrix adjust. Identities = 142/474 (29%), Positives = 235/474 (49%), Gaps = 23/474 (4%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 +VW R DLR+ DN AL AA + + A VI VFI PE+ Q + SL+ +Q+ Sbjct: 17 VVWFRRDLRVDDNPALEAALNAA-ATVIPVFIWAPEEEGQFQPGRCSRWWTKHSLVDLQQ 75 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130 +L+ G + + DS L + R +F+N Y+ + RD ++ L Sbjct: 76 ALAALGSRLIIRRST---DSTAELLKVVGEVRAEAVFFNHLYDPISLMRDHDCKRGLAAA 132 Query: 131 VIC-KSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189 + ++F+ +L P +L+ Q Y + F ++ V A+ Sbjct: 133 GVAHRTFNGDMLYEPWEVLDVNKQPYSTFDDFWNSVRAMTVPPPFPMAAPAAMPPVPAFV 192 Query: 190 PSNIPRFFDYPFQA--------IDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQG 241 PS + D+ F A + + G A+ L +F E+++ + R Sbjct: 193 PSLMVSEVDWFFTAEQEASSDQLKFKWKPGVGGAIAELERFVTERLHVFEHDRAKVDRDS 252 Query: 242 TSQLSPYLSIGVLSPRQCWNRLKE---EFVDLLIKPKSGAFSWLNELIWREFYRHLMAFY 298 TS+LSP++ IG +S R + R+++ E++ + +L ++ +RE+ R+L + Sbjct: 253 TSRLSPWIHIGSISVRYIFYRIRQCQAEWLAAGVDRTRSCDDFLQQVGYREYSRYLSFHF 312 Query: 299 PSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITA 358 P + + + W D H +AW+QG TG+PI+DAAMRQL + GW HNR R++ A Sbjct: 313 PFI-HERSLLRHLRACPWRIDQHAFKAWRQGQTGYPIVDAAMRQLWSSGWCHNRARVVAA 371 Query: 359 SFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRF 418 SFLVK+LL+ W+ G +++ +D DL + GWQ+ + +D+ P+ + + + +RF Sbjct: 372 SFLVKNLLLPWQWGLKHYWDAQIDADLECDALGWQYVSGGMSDAHPFSYMMDLEKEARRF 431 Query: 419 DPQGTFIRHWLPELNNVPTQYIH----APHSWLDKNDLSL--NYPLPIVDHKKA 466 DP G ++R WLP L+ +PT+YIH AP L D+ L NYP PI+ H A Sbjct: 432 DPDGEYVRRWLPVLSRLPTEYIHGPWKAPPQVLAAADVELGCNYPAPIISHNDA 485 >gi|146097530|ref|XP_001468129.1| DNA repair enzyme; Deoxyribodipyrimidine photolyase [Leishmania infantum] gi|134072496|emb|CAM71209.1| putative DNA repair enzyme [Leishmania infantum JPCM5] Length = 541 Score = 192 bits (489), Expect = 7e-47, Method: Compositional matrix adjust. Identities = 146/532 (27%), Positives = 224/532 (42%), Gaps = 82/532 (15%) Query: 4 TTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAV---FIATP---EQWRQHGISARQ 57 T V L R DLR+ DN L A C + + I V F P ++ R Sbjct: 22 TVREEVALFLFRRDLRVVDNTGLQALCDEAARRFIPVLPAFFFNPIQCDKKRNPYFGDAF 81 Query: 58 SHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQ------RVTKLFYNRQ 111 F SL+ + + G + + D CLQ+ V L +N Sbjct: 82 FQFFCESLIDLDGAAQLNGGLV----------CLRGSDEDCLQRIRDSGYEVKVLGFNED 131 Query: 112 YEINEVRRDKLLEKRL-QHRVICKSF-DDSVLLPPGSILNHALQMYKVYTPFRKALIQNL 169 Y + RD+LL + ++C + D L P ++ ++ Q Y V+TPF Sbjct: 132 YTPFALARDRLLRAYADKQGIVCVTGPHDYSLRPLDEVVKNSEQPYSVFTPFYNKFTAEH 191 Query: 170 VQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALH--------ILRK 221 + LPV ++ + S + + +DP + + R Sbjct: 192 ARRVAVPLPVNVSKVQSMLV-SRPKKCMGH--HLVDPALVYAHMPQVQDHGGRTEGLKRL 248 Query: 222 FCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSW 281 C E++ Y + RD A TS LSP++ G +S R+ W+ ++ + Sbjct: 249 ACVERLKQYADARDDIAGDRTSHLSPHMKCGTVSTREVWH--------ASVQALGTGHPF 300 Query: 282 LNELIWREFYRHLMAFYPSVCMGK--------------------PFIPWTEKIEWNKDSH 321 +L+WREFY L P + G+ PF P + +W+ + Sbjct: 301 TRQLVWREFYAMLAFTRPRLLQGQLNSFIGQQDIVKATQPKQNAPFQPSYDNFKWSWKAE 360 Query: 322 LLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLL 381 +A+K+G TG P++DAA+R L GW HNR R++ ++F VK L +DWR E +F + + Sbjct: 361 HFEAFKEGRTGVPLVDAAVRCLTATGWCHNRCRLVISNFAVKVLGIDWRECERWFATVAV 420 Query: 382 DGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIH 441 D D A+NNGGW W++ G D+ PYFR FN Q +RFDP FI W+PEL VP +H Sbjct: 421 DYDAANNNGGWLWSSGQGADAQPYFRTFNAFRQSERFDPDCKFIFQWVPELAKVPPSVVH 480 Query: 442 --------------APHS-----WLDKNDLSLNYPLPIVDHKKACHHTLNQY 474 A HS + + +YP PIVD K A + ++ Sbjct: 481 HWEGYCARARGKATATHSRKRSGQGNAEEYPTSYPAPIVDIKAATKAVVEEF 532 >gi|156354106|ref|XP_001623243.1| predicted protein [Nematostella vectensis] gi|156209922|gb|EDO31143.1| predicted protein [Nematostella vectensis] Length = 524 Score = 192 bits (489), Expect = 9e-47, Method: Compositional matrix adjust. Identities = 153/514 (29%), Positives = 237/514 (46%), Gaps = 47/514 (9%) Query: 1 MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQH------GIS 54 M + + LRNDLR DN+AL A N+D V+ ++ P+ ++ + Sbjct: 1 MATSKTQKTVICLLRNDLRYHDNEALLWAHKNADF-VLPLYCFDPDHYKTTWRFSLPKTA 59 Query: 55 ARQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEI 114 ++ F+ S+ ++ +L G QC + + + VT + + ++ Sbjct: 60 QYRAKFLLESVTDLRSTLQIHGSNLIIRQCQPLEAVTKLTELLKPVAPVTSIVFQQEVTY 119 Query: 115 NEVRRDK-LLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKAL-----IQN 168 E+ +K L+E + + + S L I A + YT FRK + ++N Sbjct: 120 EELNVEKALVEFCKKSGIHMHTIWGSTLFHKDDIPYKAKTVPDTYTQFRKGVENQSTVRN 179 Query: 169 LVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAID--PMFPI--GEQNALHILRKFC- 223 L+ P+P ++ P D + +D FP GEQ AL L + Sbjct: 180 LIDMPKNLKPLPPVKGELGTIPDLKSLLNDSEIKEVDQRSAFPFMGGEQEALSRLGSYLW 239 Query: 224 -KEKVYYYVEQRD-IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSW 281 + V Y E R+ + +++LSP+L+ G LSPR ++R+K+ + + + Sbjct: 240 GTDSVAKYKETRNGLLGENYSTKLSPWLANGSLSPRMVYHRIKQYEEERVAN--HSTYWV 297 Query: 282 LNELIWREFYRHLM------AFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPI 335 L ELIWR++++ + FY S MGK + W D + W +G TG P Sbjct: 298 LFELIWRDYFKFVCLKYGDRVFYRSGIMGK-------SLPWKHDKMTFKLWCEGKTGVPF 350 Query: 336 IDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWA 395 +DA MR+L GWM NR R ASFL+KDL +DWR G E+F S LLD D+ SN G W +A Sbjct: 351 VDANMRELKETGWMSNRGRQNVASFLIKDLGLDWRYGAEWFESLLLDHDVCSNYGNWNYA 410 Query: 396 ASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKN----- 450 A GND R FN QG +DP G +I+ W+PEL +P +H P W K Sbjct: 411 AGIGNDPRE-GRKFNMVKQGLDYDPDGDYIKTWVPELAKIPGAKVHVP--WTLKPGELRS 467 Query: 451 ---DLSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481 +L + YP PIV + HT ++ + KK S Sbjct: 468 SGVELGVTYPNPIVIAPEWARHT-SKTISGKKPS 500 >gi|224112573|ref|XP_002332746.1| predicted protein [Populus trichocarpa] gi|222833074|gb|EEE71551.1| predicted protein [Populus trichocarpa] Length = 646 Score = 192 bits (488), Expect = 9e-47, Method: Compositional matrix adjust. Identities = 147/487 (30%), Positives = 234/487 (48%), Gaps = 54/487 (11%) Query: 8 SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67 S +VW R DLRI DN AL AA D V VFI P++ Q ++ SL Sbjct: 4 SKTIVWFRRDLRIEDNPALAAAAR--DGCVFPVFIWCPKEEGQFYPGRVSRWWLKQSLAH 61 Query: 68 VQKSLSQKG----IVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYE-INEVRRDKL 122 + +SL G ++ + + D IE + + T++ +N Y+ ++ VR + Sbjct: 62 LGQSLKSLGAELVLIKTHSTVAALLDCIETIGA-------TRVVFNHLYDPVSLVRDHNI 114 Query: 123 LEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAI 182 EK ++ + +S++ +L P I + + + + + ++ P + Sbjct: 115 KEKLVELGISVQSYNGDLLYEPWEIYDERGHAFTTFEAYWDRCLHMQMEPVSHLPPWRLV 174 Query: 183 RLTGPVTPSNIPRFF--DYPFQAIDPMF----PIGEQNALHILRKFCKEKVYYYVEQRDI 236 G V ++ D ++ + + G NA L +F ++ + YVE R + Sbjct: 175 PAAGTVMKCSVEELGLEDEAEKSSNSLLGRGWSPGWSNADKALTEFAEQHLIDYVESR-L 233 Query: 237 PAIQGTSQLSPYLSIGVLSPRQCWNRL--------KEEFVDLLIKPKSGAFSWLNELIWR 288 TS LSPYL G LS R+ + + KEE +L+ K F L + R Sbjct: 234 KVGTSTSLLSPYLHFGELSVRKVFQCVQLKQLLWAKEE--NLMGKESVTLF--LRSIGLR 289 Query: 289 EFYRHLMAFYP-----SVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQL 343 E+ R+L +P S+ + PW N + +AW+QG TG+P++DA MR+L Sbjct: 290 EYSRYLCFNFPFTHERSLLRNLKYFPW------NDNQVHFKAWRQGRTGYPLVDAGMREL 343 Query: 344 NTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSV 403 GW+HN++R+I +SF VK LL+ WR G +YF LLD DL S+ GWQ+ + + D+ Sbjct: 344 WATGWIHNKIRVIVSSFAVKVLLLPWRWGMKYFWDTLLDADLESDILGWQYISGSLPDAH 403 Query: 404 PYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSW--------LDKNDLSLN 455 R+ NP IQG +FDP+G ++R WLPEL +P ++IH H W +L +N Sbjct: 404 ELERLDNPEIQGSKFDPEGEYVRRWLPELARMPAEWIH--HPWDASIAVLKAAGVELGIN 461 Query: 456 YPLPIVD 462 YP PI+D Sbjct: 462 YPKPIID 468 >gi|21282382|ref|NP_645470.1| hypothetical protein MW0653 [Staphylococcus aureus subsp. aureus MW2] gi|300912677|ref|ZP_07130120.1| deoxyribodipyrimidine photo-lyase [Staphylococcus aureus subsp. aureus TCH70] gi|21203819|dbj|BAB94518.1| MW0653 [Staphylococcus aureus subsp. aureus MW2] gi|300886923|gb|EFK82125.1| deoxyribodipyrimidine photo-lyase [Staphylococcus aureus subsp. aureus TCH70] Length = 457 Score = 192 bits (488), Expect = 9e-47, Method: Compositional matrix adjust. Identities = 118/340 (34%), Positives = 177/340 (52%), Gaps = 18/340 (5%) Query: 142 LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPF 201 +N + YKV+T F K L D+ + + +P ++ F D F Sbjct: 129 FKASKTMNQQGEPYKVFTSFYKKWRPYLRHRDVYHYDLKSFEDFVIASPDDLV-FDDIAF 187 Query: 202 QAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWN 261 + I EQN + F + + Y RD TSQLS L+ G+L + +N Sbjct: 188 GSS----QIIEQNKW---QHFLDQDIQNYESGRDYLPEVLTSQLSVALAYGLLDIIEIFN 240 Query: 262 RLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSH 321 L + + ++ +++ ELI+REFY LM YP + F P +I+W+++ Sbjct: 241 DLLARYDE----DEANYEAFIRELIFREFYYVLMTQYPETSY-QAFKPKYRQIKWSQNEA 295 Query: 322 LLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLL 381 AW +G TGFPIIDAA+ +L G+MHNR+RM+ + FL KDL +DW GE++F L+ Sbjct: 296 DFNAWCEGQTGFPIIDAAIMELTQTGFMHNRMRMVVSQFLTKDLFIDWTWGEKFFRKHLI 355 Query: 382 DGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIH 441 D D ASN GWQW+ASTG D+VPYFR+FNP Q +RFD + +I+ +LP N + +Y+H Sbjct: 356 DYDAASNIHGWQWSASTGTDAVPYFRMFNPIRQSERFDAKALYIKTYLPIFNQIDAKYLH 415 Query: 442 APHS-----WLDKNDLSLNYPLPIVDHKKACHHTLNQYYA 476 + +L +YP IVDH++ L + A Sbjct: 416 DTQRNESNLFEQGIELGSHYPRQIVDHQEKRTQVLATFKA 455 >gi|323476401|gb|ADX81639.1| Deoxyribodipyrimidine photo-lyase [Sulfolobus islandicus HVE10/4] Length = 433 Score = 192 bits (488), Expect = 9e-47, Method: Compositional matrix adjust. Identities = 147/456 (32%), Positives = 218/456 (47%), Gaps = 51/456 (11%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHG--ISARQSHFIYASLLQV 68 L R DLR+ DN L A + + KVI FI P Q S +F+ SL ++ Sbjct: 4 LFIFRRDLRLDDNTGLIKALEDCE-KVIPAFILDPRQVGNENEYKSEFAINFMINSLNEL 62 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128 L ++G + F + E + + L + V ++ N Y RD+ + K + Sbjct: 63 NDELRKRGSRLYVY----FGLAEEVIKN--LLKDVDAVYLNEDYTPFSKMRDERIRKYCE 116 Query: 129 HR-VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187 I KSF+D +L N Y+ +T F N+V+ PV Sbjct: 117 DTGKIMKSFEDYLLTSKNDFKN-----YRNFTTF-----YNVVKNKQIRKPVQ------- 159 Query: 188 VTPSNIPRFFDYPFQAIDPMFPI-GEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246 +N ++ + P GE+ K + +++D A + LS Sbjct: 160 ---NNYTNYYKNSLGDEHELPPRQGERGGRKEGIKLIERARQINYDRKDFVAEDNRTFLS 216 Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP 306 P+L G LS R+ + L + + + + +L WR+FY L+A+Y +P Sbjct: 217 PHLKFGTLSIREVYYSLLD------------SQAIIRQLYWRDFY-TLLAYYNERVFHEP 263 Query: 307 FIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLL 366 IEW + LLQAW +G TG+PIIDA MRQLN G M NR+RM+TA FLVK LL Sbjct: 264 LKREYNCIEWENNERLLQAWVEGKTGYPIIDAGMRQLNRTGDMPNRVRMLTAFFLVKVLL 323 Query: 367 VDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIR 426 +DWRIGE+YF S+L+D D + NNG WQW AS G D + FR+F+P Q +DP+ +++ Sbjct: 324 IDWRIGEKYFASKLIDYDPSVNNGNWQWIASVGTDYI--FRVFDPWKQQITYDPEAKYVK 381 Query: 427 HWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVD 462 W+ EL + ++ IH + + K NYP PIVD Sbjct: 382 RWVDELESYDSEIIHNAYKYTLK-----NYPKPIVD 412 >gi|184201932|ref|YP_001856139.1| deoxyribodipyrimidine photo-lyase [Kocuria rhizophila DC2201] gi|183582162|dbj|BAG30633.1| deoxyribodipyrimidine photo-lyase [Kocuria rhizophila DC2201] Length = 441 Score = 192 bits (488), Expect = 9e-47, Method: Compositional matrix adjust. Identities = 128/427 (29%), Positives = 204/427 (47%), Gaps = 25/427 (5%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 +V R+DLR+TD+ AL+ A + + V+ +++ E + +++ SL + Sbjct: 4 VVLFRDDLRVTDHPALHEAVSHGE-PVVCLYVLDEESEGVRPLGGAAKWWLHHSLTSLAS 62 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDK-LLEKRLQH 129 LS+ G+ + + + + + +L +NR+Y E D L E ++ Sbjct: 63 DLSELGVPLTLRRGP----AGKVVPHVVRETGADRLLWNRRYGGPERAVDAGLKEWAGEN 118 Query: 130 RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189 V S+ S++ P ++ Y+V+TPF +A + +I P Sbjct: 119 GVEAHSYAGSLMFEPWTVSTQNGDPYRVFTPFWRACTSGPPPREPYPA-PSSIDHADPAP 177 Query: 190 PSN-------IPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGT 242 S +P D+ + + +GE+ A L +F E++ Y + RD+PA T Sbjct: 178 ASEDLVDWELLPTHPDWS-GGLARTWTVGERAAHERLDEFLDERLPRYTQDRDVPARPAT 236 Query: 243 SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVC 302 S LSP+L G +SP W+ E G F L E+ WREF + + +P + Sbjct: 237 SGLSPHLRWGEISPYTVWHTALER------AENPGKF--LTEVGWREFSWYNLYVHPDMA 288 Query: 303 MGKPFIPWTEKIEWNK-DSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFL 361 + P + W D +L AW+ G TG P++DA M +L G M NR+RM+ AS L Sbjct: 289 T-ENINPKFDAFPWPPLDEDVLAAWQMGRTGIPLVDAGMHELWETGAMQNRVRMVVASLL 347 Query: 362 VKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQ 421 K+LL+DWR+GE++F L+D D ASN WQW A G D+ PYFRIFN Q K+FDP Sbjct: 348 AKNLLIDWRLGEQWFWDTLVDADPASNPHNWQWVAGCGTDAAPYFRIFNAETQQKKFDPD 407 Query: 422 GTFIRHW 428 ++ W Sbjct: 408 FVYVDRW 414 >gi|304571342|dbj|BAJ15789.1| cryptochrome2 [Cardamine alpina] Length = 591 Score = 192 bits (488), Expect = 1e-46, Method: Compositional matrix adjust. Identities = 151/475 (31%), Positives = 233/475 (49%), Gaps = 38/475 (8%) Query: 17 DLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQKSLSQKG 76 DLRI DN AL AA H + V VFI PE+ Q ++ SL + +SL G Sbjct: 1 DLRIEDNPALAAAAH--EGSVFPVFIWCPEEEGQFYPGRASRWWMKQSLSHLSQSLKALG 58 Query: 77 IVFQYHQCSNFDDSIEWLDSYCLQ-QRVTKLFYNRQYE-INEVRRDKLLEKRLQHRVICK 134 + N +I LD C++ TK+ +N Y+ ++ VR + EK ++ + + Sbjct: 59 SELTLIKTHNTVSAI--LD--CIRVTGATKVVFNHLYDPVSLVRDHTVKEKLVEVGISVQ 114 Query: 135 SFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADL-----RSLPVPAIR---LTG 186 SF+ +L P I + ++ + K ++ +++ + R +PV A Sbjct: 115 SFNGDLLYEPWEIYCEKGKPLTSFSSYWKKCLEMSIESVMLPPPWRLMPVTAAAEAVWAC 174 Query: 187 PVTPSNIPRFFDYPFQAI-DPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245 + + + P A+ + G NA IL +F ++++ Y + TS L Sbjct: 175 SIEELGLENEAEKPSNALLTRAWSPGWSNADKILNEFIEKQLIDYAKNSKKVVGNSTSLL 234 Query: 246 SPYLSIGVLSPR---QCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYP--- 299 SPYL G +S R QC R+K+ + A +L + RE+ R+L +P Sbjct: 235 SPYLHFGEISIRRVFQC-ARMKQIIWAKNSEGDESADLFLKGIGLREYSRYLCFNFPFTH 293 Query: 300 --SVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMIT 357 S+ F PW + D +AW+QG TG+P++DA MR+L GWMHNR+R+I Sbjct: 294 EQSLLSHLRFFPW------DADVEKFKAWRQGRTGYPLVDAGMRELWATGWMHNRIRVIV 347 Query: 358 ASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKR 417 +SF VK LL+ W+ G +YF LLD DL + GWQ+ + + D R+ NP IQG + Sbjct: 348 SSFAVKFLLLPWKWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELDRLDNPAIQGAK 407 Query: 418 FDPQGTFIRHWLPELNNVPTQYIH----APHSWLDKN--DLSLNYPLPIVDHKKA 466 FDP+G +IR WLPEL +P+++IH AP + L + +L NY PIVD A Sbjct: 408 FDPEGDYIRQWLPELARLPSEWIHHPWDAPLTVLKASGVELGTNYAKPIVDIDTA 462 >gi|6594296|dbj|BAA88423.1| blue light photoreceptor [Adiantum capillus-veneris] gi|6594300|dbj|BAA88425.1| blue light photoreceptor [Adiantum capillus-veneris] Length = 699 Score = 192 bits (488), Expect = 1e-46, Method: Compositional matrix adjust. Identities = 145/492 (29%), Positives = 233/492 (47%), Gaps = 31/492 (6%) Query: 6 AMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASL 65 A +VWLR DLR+ DN AL AA + V+ VFI +PE+ RQ ++ SL Sbjct: 2 AKPCTIVWLRRDLRLEDNPALCAAGRIGN--VVPVFIWSPEEERQFHPGRVSRWWLKQSL 59 Query: 66 LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125 +Q+ SL G+ + + D++ L T++FYN Y+ + RD +++ Sbjct: 60 IQLDVSLRSFGVPLVMRKST---DTLGTLQELIKATGATQVFYNHLYDPISLVRDHHVKQ 116 Query: 126 RL-QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL 184 L Q + +SF+ +L P +LN + + + + + + + D LP + Sbjct: 117 GLTQSGIQVQSFNGDLLYEPWEVLNDDGKPFTSFESYWQKCLNMPFEPDSPLLPPRRLTS 176 Query: 185 TGPVTPSNIPRFFDYPFQA-------IDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIP 237 P+ P + + + G NA L F + Y R Sbjct: 177 IAGSIPTYTPEELGLEDETEKSSNALLARAWAPGWSNADRALEAFLAGPLLEYSRNRHKI 236 Query: 238 AIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGA-------FSWLNELIWREF 290 TS LSP++ G +S R+ ++ ++ L+ K G+ + ++ + +RE+ Sbjct: 237 DGPTTSLLSPHMHFGEVSVRKVYHSVRRL---QLLWAKDGSKLGEESIYFFMRSIGFREY 293 Query: 291 YRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMH 350 R+L +P + + + W D +AW+QG TG+P++DA MR+L GW+H Sbjct: 294 SRYLSFNFP-FTHERSLLSNLKSFPWRVDEGFFKAWRQGRTGYPLVDAGMRELWATGWLH 352 Query: 351 NRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFN 410 NR+R+I +SF VK L + WR G +YF LLD DL S+ GWQ+ + + D R+ N Sbjct: 353 NRVRVIVSSFCVKFLQLPWRWGMKYFWDTLLDADLESDVLGWQYISGSLPDGHELDRMDN 412 Query: 411 PTIQGKRFDPQGTFIRHWLPELNNVPTQYIH----APHSWLDKNDLSL--NYPLPIVDHK 464 P +G + DP G ++R WLPEL +PT++IH AP + L + L NYP PIV+ Sbjct: 413 PQTEGYKHDPVGEYVRRWLPELVRLPTEWIHHPWDAPPAVLRAAGVELGSNYPRPIVE-V 471 Query: 465 KACHHTLNQYYA 476 A L Q A Sbjct: 472 AAARERLRQAVA 483 >gi|304571334|dbj|BAJ15785.1| cryptochrome2 [Cardamine nipponica] Length = 590 Score = 192 bits (487), Expect = 1e-46, Method: Compositional matrix adjust. Identities = 150/475 (31%), Positives = 234/475 (49%), Gaps = 38/475 (8%) Query: 17 DLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQKSLSQKG 76 DLRI DN AL AA H + V VFI PE+ Q ++ SL + +SL G Sbjct: 1 DLRIEDNPALAAAAH--EGSVFPVFIWCPEEEGQFYPGRASRWWLKQSLSHLSQSLKALG 58 Query: 77 IVFQYHQCSNFDDSIEWLDSYCLQ-QRVTKLFYNRQYE-INEVRRDKLLEKRLQHRVICK 134 + N +I LD C++ TK+ +N Y+ ++ VR + EK ++ + + Sbjct: 59 SELTLIKTHNTVSAI--LD--CIRVTGATKVVFNHLYDPVSLVRDHTVKEKLVEVGISVQ 114 Query: 135 SFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLP---VPAIRLTGPVTPS 191 SF+ +L P I + + ++ + K ++ +++ + P +P T V Sbjct: 115 SFNGDLLYEPWEIYCEKGKPFTSFSSYWKKCLEMSIESVMLPPPWRLMPVTAATEAVWAC 174 Query: 192 NIPRF-----FDYPFQAI-DPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245 +I + P A+ + G NA IL +F ++++ Y + TS L Sbjct: 175 SIEELGLENEAEKPSNALLTRAWSPGWSNADKILNEFIEKQLIDYAKNSKKVVGNSTSLL 234 Query: 246 SPYLSIGVLSPR---QCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYP--- 299 SPYL G +S R QC R+K+ + A +L + RE+ R++ +P Sbjct: 235 SPYLHYGEISVRRVFQC-ARMKQIIWAKNSEGDESADLFLKGIGLREYSRYICFNFPFTH 293 Query: 300 --SVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMIT 357 S+ F PW + D +AW+QG TG+P++DA MR+L GW+HNR+R+I Sbjct: 294 EQSLLSHLRFFPW------DADVEKFKAWRQGRTGYPLVDAGMRELWATGWVHNRIRVIV 347 Query: 358 ASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKR 417 +SF VK LL+ W+ G +YF LLD DL + GWQ+ + + D R+ NP IQG + Sbjct: 348 SSFAVKFLLLPWKWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELDRLDNPAIQGAK 407 Query: 418 FDPQGTFIRHWLPELNNVPTQYIH----APHSWLDKN--DLSLNYPLPIVDHKKA 466 FDP+G +IR WLPEL +P+++IH AP + L + +L NY PIVD A Sbjct: 408 FDPEGDYIRQWLPELARLPSEWIHHPWDAPLTVLKASGVELGTNYAKPIVDIDTA 462 >gi|55377570|ref|YP_135420.1| photolyase/cryptochrome [Haloarcula marismortui ATCC 43049] gi|55230295|gb|AAV45714.1| photolyase/cryptochrome [Haloarcula marismortui ATCC 43049] Length = 464 Score = 191 bits (486), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 140/480 (29%), Positives = 223/480 (46%), Gaps = 45/480 (9%) Query: 1 MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHF 60 M + +H+ W + DLRI DN+ L AA +D +V+ V++ + I RQ F Sbjct: 1 MLVSLTKCMHVFWHQRDLRIPDNRGLTAAA--ADDEVLPVYVLDTDLLAN--IGKRQKAF 56 Query: 61 IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120 + A + ++++ G + + D +D Y +++YN Y R Sbjct: 57 LLAGVRALKQAYRDHGGELLVKKGTAVDVLSNVVDEYD----ADRVYYNEHYRPARRNRQ 112 Query: 121 KLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVP 180 + +++ L KS D VL+ P + + + Y + QA + PV Sbjct: 113 RRVDEALP----TKSLTDLVLVDPAGLDSQYENHSRFYDDW---------QAHHKLPPVG 159 Query: 181 A------IRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQR 234 + + ++ P T I D P G + A F + Y + R Sbjct: 160 SPDSGSLVDVSDPTTAPTIETEMDLPTP--------GYEGARQRYDDFLTGGIETYNDTR 211 Query: 235 DI--PAIQ----GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWR 288 D A++ S++SPYL+ G++ R+ W + + + + EL WR Sbjct: 212 DDMQAAVERPTSAVSRMSPYLAAGMIGIREMWRDASDRHTEATGDAQRNIQKYRYELSWR 271 Query: 289 EFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGW 348 E HL+ + P++ + + + + +IEW D +AWK G TG+P IDA MRQL G+ Sbjct: 272 EQSYHLLYYNPTL-LSENYKTFPNRIEWENDEDNFEAWKHGETGYPFIDAGMRQLEQEGY 330 Query: 349 MHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRI 408 +HNR R ASFL K LLVDWR G +F +L+D D A+N WQW ASTG DSV RI Sbjct: 331 IHNRPRQNVASFLTKHLLVDWREGARHFRKRLVDHDPANNAASWQWTASTGTDSVD-VRI 389 Query: 409 FNPTIQGKRFDPQGTFIRHWLPELNNVP-TQYIHAPH-SWLDKNDLSLNYPLPIVDHKKA 466 F+P Q ++D ++ ++PEL VP T+ + P S ++ +L+ +Y PIVD A Sbjct: 390 FDPVAQMSKYDSGADYVTEYVPELRGVPSTKIVDWPTLSDGEREELAPDYYHPIVDRNAA 449 >gi|730324|sp|P40115|CRY1_SINAL RecName: Full=Cryptochrome-1; AltName: Full=Blue light photoreceptor gi|414196|emb|CAA50898.1| photolyase [Sinapis alba] Length = 501 Score = 191 bits (486), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 153/486 (31%), Positives = 233/486 (47%), Gaps = 57/486 (11%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 +VW R DLRI DN AL AA H + V VFI PE+ Q ++ SL +++ Sbjct: 8 IVWFRRDLRIEDNPALAAAAH--EGSVFPVFIWCPEEEGQFYPGRASRWWMKQSLAHLRQ 65 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQR-VTKLFYNRQYEINEVRRDKLLEKRLQH 129 SL G + + +I LD C++ TK+ +N Y+ + RD ++++L Sbjct: 66 SLKALGSELTLIKTHSTVSAI--LD--CVRATGATKVVFNHLYDPVSLVRDHTVKEKLVE 121 Query: 130 RVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADL-----RSLPVPAIR 183 R I +S++ + + PG + V K + V++ + R +P+ A Sbjct: 122 RGISVQSYNGDLCMSPGRYTVKRANLLLVLILTGKKCLDMSVESVVLPPPWRLMPLSAAE 181 Query: 184 LT--GPVTPSNIPRFFDYPFQAI-DPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ 240 V + + P A+ + G NA IL +F ++++ Y + Sbjct: 182 TVWACSVEELGLENEAEKPSNALLTRAWSPGWSNADKILNEFIEKQLIDYAKNSKKVVGN 241 Query: 241 GTSQLSPYLSIGVLSPR---QC-------WNRLK----EEFVDLLIKPKSGAFSWLNELI 286 TS LSPYL G +S R QC W R K EE DL ++ + Sbjct: 242 STSLLSPYLHFGEISVRRVFQCARMKQIIWARDKNGEGEESADLFLRG----------IG 291 Query: 287 WREFYRHLMAFYP-----SVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMR 341 R++ R + +P S+ F PW + D +AW+QG TG+P++DA MR Sbjct: 292 LRDYSRIICFNFPFTHEQSLLSHLRFFPW------DADVDKFKAWRQGRTGYPLVDAGMR 345 Query: 342 QLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGND 401 +L GWMHNR+R+I +SF VK LL+ W+ G +YF LLD DL + GWQ+ + + D Sbjct: 346 ELWATGWMHNRIRVIVSSFAVKFLLLPWKWGMKYFWDTLLDADLECDIIGWQYISGSLPD 405 Query: 402 SVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIH----APHSWLDKN--DLSLN 455 R+ NP IQG ++DP+G +IR WLPEL +PT++IH AP + L + +L N Sbjct: 406 GHELDRLDNPAIQGAKYDPEGEYIRQWLPELARLPTEWIHHPWDAPLTVLKASGVELGTN 465 Query: 456 YPLPIV 461 Y PIV Sbjct: 466 YAKPIV 471 >gi|319893699|ref|YP_004150574.1| Deoxyribodipyrimidine photolyase [Staphylococcus pseudintermedius HKU10-03] gi|317163395|gb|ADV06938.1| Deoxyribodipyrimidine photolyase [Staphylococcus pseudintermedius HKU10-03] Length = 474 Score = 191 bits (486), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 117/337 (34%), Positives = 173/337 (51%), Gaps = 19/337 (5%) Query: 144 PGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQA 203 P N Q Y+++T F KA Q+L ++ + + + FD + Sbjct: 131 PSKTFNQQHQPYQIFTYFYKANRQHLAHTPQKNTQLKQLAQYAAKGMNQSDLKFD---KH 187 Query: 204 IDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRL 263 D E A F ++ Y + D S LS YL+ G+L R+ N L Sbjct: 188 TDE-----EAYARQSWNHFLNHEITLYSQLADDITRNNISGLSRYLAYGLLDIREVINHL 242 Query: 264 KEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLL 323 E + ++ S++ EL++REFY LM YP + F +EW++ Sbjct: 243 LEGYD----SDENSYESFIRELMFREFYYVLMTQYPDAAT-QSFSVKYRNMEWSERQSHF 297 Query: 324 QAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDG 383 +AWK G TG+PIIDAAM++L G+MHNRLRMI + FL K L ++W GE +F L+D Sbjct: 298 EAWKNGETGYPIIDAAMKKLLRTGYMHNRLRMIVSQFLTKHLFMNWTWGEAHFRRYLIDY 357 Query: 384 DLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAP 443 D ASN GWQW+ASTG D+VPYFR+FNP Q +RFD G FI+ L L +V +YIH P Sbjct: 358 DNASNVHGWQWSASTGTDAVPYFRMFNPIRQSERFDAMGDFIKEQLQILKDVKPKYIHNP 417 Query: 444 HSWLD------KNDLSLNYPLPIVDHKKACHHTLNQY 474 ++ + + +YP I++HK++ + + Q+ Sbjct: 418 SQYVTAIQQNHQIKIGEDYPKAIINHKESRDYVMQQF 454 >gi|322502106|emb|CBZ37189.1| unnamed protein product [Leishmania donovani BPK282A1] Length = 541 Score = 191 bits (486), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 151/541 (27%), Positives = 231/541 (42%), Gaps = 100/541 (18%) Query: 4 TTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAV---FIATP---EQWRQHGISARQ 57 T V L R DLR+ DN L A C + + I V F P ++ R Sbjct: 22 TVREEVALFLFRRDLRVVDNTGLQALCDEAARRSIPVLPAFFFNPIQCDKKRNPYFGDAF 81 Query: 58 SHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQ------RVTKLFYNRQ 111 F SL+ + + G + + D CLQ+ V L +N Sbjct: 82 FQFFCESLIDLDGAAQLNGGLV----------CLRGSDEDCLQRIRDSGYEVKVLGFNED 131 Query: 112 YEINEVRRDKLLEKRL-QHRVICKSF-DDSVLLPPGSILNHALQMYKVYTPFRKA----- 164 Y + RD+LL + ++C + D L P ++ ++ Q Y V+TPF Sbjct: 132 YTPFALARDRLLRAYADKQGIVCVTGPHDYSLRPLDEVVKNSEQPYSVFTPFYNKFTAEH 191 Query: 165 -------LIQNL--VQADLRSLPVPAIR--LTGP-VTPSNIPRFFDYPFQAIDPMFPIGE 212 L+ N+ VQ+ L S P + L P + +++P+ D+ G Sbjct: 192 AHRVAVPLLVNVSKVQSMLVSQPKKRMEHHLVDPALVYAHMPQVQDHG----------GR 241 Query: 213 QNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLI 272 L R C E++ Y + RD A TS LSP++ G +S R+ W+ + Sbjct: 242 TEGLK--RLACVERLKQYADARDDIAGDRTSHLSPHMKCGTVSTREVWH--------ASV 291 Query: 273 KPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK--------------------PFIPWTE 312 + + +L+WREFY L P + G+ PF P + Sbjct: 292 RALGTGHPFTRQLVWREFYAMLAFTRPRLLQGQLNSFIGQQDIVKATQPKQNAPFQPSYD 351 Query: 313 KIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIG 372 +W+ + +A+K+G TG P++DAA+R L GW HNR R++ ++F VK L +DWR Sbjct: 352 NFKWSWKAEHFEAFKEGRTGVPLVDAAVRCLTATGWCHNRCRLVISNFAVKVLGIDWREC 411 Query: 373 EEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPEL 432 E +F + +D D A+NNGGW W++ G D+ PYFR FN Q +RFDP FI W+PEL Sbjct: 412 ERWFATVAVDYDAANNNGGWLWSSGQGADAQPYFRTFNAFRQSERFDPDCKFIFQWVPEL 471 Query: 433 NNVPTQYIHAPHSWL-------------------DKNDLSLNYPLPIVDHKKACHHTLNQ 473 VP +H + + + S +YP PIVD K A + + Sbjct: 472 AKVPPSVVHHWEGYCARARGKATVTHSRKRNGQGNAEEYSTSYPAPIVDIKAATKAVVEE 531 Query: 474 Y 474 + Sbjct: 532 F 532 >gi|49485563|ref|YP_042784.1| putative DNA photolyase [Staphylococcus aureus subsp. aureus MSSA476] gi|253731313|ref|ZP_04865478.1| deoxyribodipyrimidine photo-lyase [Staphylococcus aureus subsp. aureus USA300_TCH959] gi|297208585|ref|ZP_06925014.1| deoxyribodipyrimidine photo-lyase [Staphylococcus aureus subsp. aureus ATCC 51811] gi|49244006|emb|CAG42432.1| putative DNA photolyase [Staphylococcus aureus subsp. aureus MSSA476] gi|253725054|gb|EES93783.1| deoxyribodipyrimidine photo-lyase [Staphylococcus aureus subsp. aureus USA300_TCH959] gi|296886840|gb|EFH25744.1| deoxyribodipyrimidine photo-lyase [Staphylococcus aureus subsp. aureus ATCC 51811] gi|329729546|gb|EGG65947.1| FAD binding domain of DNA photolyase [Staphylococcus aureus subsp. aureus 21193] Length = 457 Score = 191 bits (485), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 136/471 (28%), Positives = 225/471 (47%), Gaps = 29/471 (6%) Query: 14 LRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQKSLS 73 L N + ++ L+ + + A + PE+ S ++ F +L + +SL Sbjct: 6 LLNRMFRMEHNPLFEYIYQQKEDIDACYFIIPEE-DMSSASDLKAQFYRGTLQRFYQSLH 64 Query: 74 QKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL---QHR 130 + + ++DD I S+C + ++++ + +L +R + R Sbjct: 65 AEKLT---PYVMSYDDII----SFCKENNISEVVTAGDIMSYHLEEYDILHQRSLFNEAR 117 Query: 131 VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTP 190 + + +N + YKV+T F K L D+ + + +P Sbjct: 118 IAVTLIRGNHYFKASKTMNQQGEPYKVFTSFYKKWRPYLRHRDVYHYDLKSFEDFVIASP 177 Query: 191 SNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLS 250 ++ F D F + I EQN + F + + Y RD TSQLS L+ Sbjct: 178 DDLV-FDDIAFGSS----QIIEQNKW---QHFLDQDIQNYESGRDYLPEVLTSQLSVALA 229 Query: 251 IGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPW 310 G+L + +N L + + ++ +++ ELI+REFY LM YP + F P Sbjct: 230 YGLLDIIEIFNDLLARYDE----DEANYEAFIRELIFREFYYVLMTQYPETSY-QAFKPK 284 Query: 311 TEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWR 370 +I+W+++ AW +G TGFPIIDAA+ +L G+MHNR+RM+ + FL KDL +DW Sbjct: 285 YRQIKWSQNEADFNAWCEGQTGFPIIDAAIMELTQTGFMHNRMRMVVSQFLTKDLFIDWT 344 Query: 371 IGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLP 430 GE++F L+D D ASN GWQW+ASTG D+VPYFR+FNP Q +RFD + +I+ +LP Sbjct: 345 WGEKFFRKHLIDYDAASNIHGWQWSASTGTDAVPYFRMFNPIRQSERFDAKALYIKTYLP 404 Query: 431 ELNNVPTQYIHAPHS-----WLDKNDLSLNYPLPIVDHKKACHHTLNQYYA 476 N + +Y+H + +L +YP +VDH++ L + A Sbjct: 405 IFNQIDAKYLHDTQRNESNLFEQGIELGSHYPRQMVDHQEKRTQVLATFKA 455 >gi|242092996|ref|XP_002436988.1| hypothetical protein SORBIDRAFT_10g013750 [Sorghum bicolor] gi|241915211|gb|EER88355.1| hypothetical protein SORBIDRAFT_10g013750 [Sorghum bicolor] Length = 654 Score = 191 bits (485), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 140/476 (29%), Positives = 231/476 (48%), Gaps = 33/476 (6%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 +VW R DLRI DN AL AA + V+ +FI P + Q+ ++ SL + K Sbjct: 8 VVWFRRDLRIHDNPALAAAAK--EGSVLPLFIWCPADYEQYYPGRCSRWWLKQSLAHLGK 65 Query: 71 SLSQKG--IVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYE-INEVRRDKLLEKRL 127 SL G +V + S +E + +C+ T++ YNR Y+ I+ V DK+ + Sbjct: 66 SLELLGCPLVLIRAEDSTLATLLECV--HCIS--ATRVVYNRLYDPISLVLDDKIKNELS 121 Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQ-----ADLRSLPVPAI 182 H + +SF+ +L P + + Q + + + + + ++ A R + P + Sbjct: 122 AHGISVQSFNGDLLYEPWDVYDENGQAFTSFNKYWEKCMNVPIEISQYLAPTRLVAAPGL 181 Query: 183 RLTGPVTPSNIPRFFDYPFQAIDPMFPI----GEQNALHILRKFCKEKVYYYVEQRDIPA 238 + ++ ++ + + G +NA ++L +F + Y + Sbjct: 182 ANVRCCSIDDLGLESSKDVESSNALLSRAWSPGWRNAENMLEEFLSCGLLEYSKHGMKVG 241 Query: 239 IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFS----WLNELIWREFYRHL 294 TS LSPYL G LS R+ + + V + KS A +L + +RE+ R+L Sbjct: 242 GTTTSLLSPYLHFGELSVRKVYQLVTMHHVKWQNEGKSEAEESVRLFLRSIGFREYSRYL 301 Query: 295 MAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLR 354 +P + F+ + W D ++W+QG TG+P++DA MR+L GW HNR+R Sbjct: 302 CFNFP-FTHERSFLGNLKHYPWLLDEDRFKSWRQGMTGYPLVDAGMRELWATGWTHNRIR 360 Query: 355 MITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQ 414 +I +SF VK L + W G +YF LLD DL S+ GWQ+ + + D R+ NP +Q Sbjct: 361 VIVSSFAVKCLQIPWIWGMKYFWDVLLDADLESDILGWQYISGSLPDGHELSRLDNPEVQ 420 Query: 415 GKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKN--------DLSLNYPLPIVD 462 G+++DP G ++R W+PEL +PT++IH P W N +L NYP PIV+ Sbjct: 421 GQKYDPDGEYVRTWIPELARMPTEWIHCP--WSAPNSILQVAGVELGFNYPKPIVE 474 >gi|304571332|dbj|BAJ15784.1| cryptochrome2 [Cardamine nipponica] gi|304571336|dbj|BAJ15786.1| cryptochrome2 [Cardamine nipponica] gi|304571338|dbj|BAJ15787.1| cryptochrome2 [Cardamine nipponica] gi|304571340|dbj|BAJ15788.1| cryptochrome2 [Cardamine nipponica] Length = 590 Score = 191 bits (484), Expect = 3e-46, Method: Compositional matrix adjust. Identities = 149/475 (31%), Positives = 234/475 (49%), Gaps = 38/475 (8%) Query: 17 DLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQKSLSQKG 76 DLRI DN AL AA H + V VFI PE+ Q ++ SL + +SL G Sbjct: 1 DLRIEDNPALAAAAH--EGSVFPVFIWCPEEEGQFYPGRASRWWLKQSLSHLSQSLKALG 58 Query: 77 IVFQYHQCSNFDDSIEWLDSYCLQ-QRVTKLFYNRQYE-INEVRRDKLLEKRLQHRVICK 134 + N +I LD C++ TK+ +N Y+ ++ VR + EK ++ + + Sbjct: 59 SELTLIKTHNTVSAI--LD--CIRVTGATKVVFNHLYDPVSLVRDHTVKEKLVEVGISVQ 114 Query: 135 SFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADL-----RSLPVPAIR---LTG 186 SF+ +L P I + + ++ + K ++ +++ + R +PV A Sbjct: 115 SFNGDLLYEPWEIYCEKGKPFTSFSSYWKKCLEMSIESVMLPPPWRLMPVTAAAEAVWAC 174 Query: 187 PVTPSNIPRFFDYPFQAI-DPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245 + + + P A+ + G NA IL +F ++++ Y + TS L Sbjct: 175 SIEELGLENEAEKPSNALLTRAWSPGWSNADKILNEFIEKQLIDYAKNSKKVVGNSTSLL 234 Query: 246 SPYLSIGVLSPR---QCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYP--- 299 SPYL G +S R QC R+K+ + A +L + RE+ R++ +P Sbjct: 235 SPYLHYGEISVRRVFQC-ARMKQIIWAKNSEGDESADLFLKGIGLREYSRYICFNFPFTH 293 Query: 300 --SVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMIT 357 S+ F PW + D +AW+QG TG+P++DA MR+L GW+HNR+R+I Sbjct: 294 EQSLLSHLRFFPW------DADVEKFKAWRQGRTGYPLVDAGMRELWATGWVHNRIRVIV 347 Query: 358 ASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKR 417 +SF VK LL+ W+ G +YF LLD DL + GWQ+ + + D R+ NP IQG + Sbjct: 348 SSFAVKFLLLPWKWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELDRLDNPAIQGAK 407 Query: 418 FDPQGTFIRHWLPELNNVPTQYIH----APHSWLDKN--DLSLNYPLPIVDHKKA 466 FDP+G +IR WLPEL +P+++IH AP + L + +L NY PIVD A Sbjct: 408 FDPEGDYIRQWLPELARLPSEWIHHPWDAPLTVLKASGVELGTNYAKPIVDIDTA 462 >gi|258454058|ref|ZP_05702030.1| deoxyribodipyrimidine photo-lyase type I [Staphylococcus aureus A5937] gi|257863923|gb|EEV86679.1| deoxyribodipyrimidine photo-lyase type I [Staphylococcus aureus A5937] Length = 457 Score = 191 bits (484), Expect = 3e-46, Method: Compositional matrix adjust. Identities = 115/340 (33%), Positives = 177/340 (52%), Gaps = 18/340 (5%) Query: 142 LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPF 201 +N + YKV+T F + L D+ + + +P ++ F D F Sbjct: 129 FKASKTMNQQGEPYKVFTSFYRKWRSYLRHRDVYHYDLKSFEDFVIASPDDLV-FDDIAF 187 Query: 202 QAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWN 261 + + EQN + F + + Y RD TSQLS L+ G+L + +N Sbjct: 188 GSS----QVIEQNKW---QHFLDQDIQNYESGRDYLPEVLTSQLSVALAYGLLDIIEIFN 240 Query: 262 RLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSH 321 L + + ++ +++ ELI+REFY LM YP + F P +I+W+++ Sbjct: 241 DLLARYDE----DEANHEAFIRELIFREFYYVLMTQYPETSY-QAFKPKYRQIKWSQNEA 295 Query: 322 LLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLL 381 AW +G TGFPIIDAA+ +L G+MHNR+RM+ + FL KDL +DW GE++F L+ Sbjct: 296 NFNAWCEGQTGFPIIDAAIMELTQTGFMHNRMRMVVSQFLTKDLFIDWTWGEKFFRKHLI 355 Query: 382 DGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIH 441 D D ASN GWQW+ASTG D+VPYFR+FNP Q +RFD + +I+ +LP N + +Y+H Sbjct: 356 DYDAASNIHGWQWSASTGTDAVPYFRMFNPIRQSERFDAKALYIKTYLPIFNQIDAKYLH 415 Query: 442 APHS-----WLDKNDLSLNYPLPIVDHKKACHHTLNQYYA 476 + +L +YP +VDH++ L + A Sbjct: 416 DTQRNESNLFEQGIELGSHYPRQMVDHQEKRTQVLATFKA 455 >gi|49482947|ref|YP_040171.1| DNA photolyase [Staphylococcus aureus subsp. aureus MRSA252] gi|257424810|ref|ZP_05601237.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus 55/2053] gi|257427478|ref|ZP_05603877.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus 65-1322] gi|257430109|ref|ZP_05606493.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus 68-397] gi|257432811|ref|ZP_05609171.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus E1410] gi|257435715|ref|ZP_05611763.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus M876] gi|282903318|ref|ZP_06311209.1| putative deoxyribodipyrimidine photolyase [Staphylococcus aureus subsp. aureus C160] gi|282905098|ref|ZP_06312956.1| deoxyribodipyrimidine photo-lyase [Staphylococcus aureus subsp. aureus Btn1260] gi|282908075|ref|ZP_06315906.1| deoxyribodipyrimidine photo-lyase [Staphylococcus aureus subsp. aureus WW2703/97] gi|282910335|ref|ZP_06318139.1| deoxyribodipyrimidine photo-lyase [Staphylococcus aureus subsp. aureus WBG10049] gi|282913528|ref|ZP_06321317.1| putative deoxyribodipyrimidine photolyase [Staphylococcus aureus subsp. aureus M899] gi|282923446|ref|ZP_06331126.1| DNA photolyase [Staphylococcus aureus subsp. aureus C101] gi|283957520|ref|ZP_06374973.1| putative deoxyribodipyrimidine photolyase [Staphylococcus aureus subsp. aureus A017934/97] gi|293500575|ref|ZP_06666426.1| deoxyribodipyrimidine photo-lyase [Staphylococcus aureus subsp. aureus 58-424] gi|293509521|ref|ZP_06668232.1| deoxyribodipyrimidine photo-lyase [Staphylococcus aureus subsp. aureus M809] gi|293524107|ref|ZP_06670794.1| putative deoxyribodipyrimidine photolyase [Staphylococcus aureus subsp. aureus M1015] gi|295427267|ref|ZP_06819902.1| deoxyribodipyrimidine photo-lyase [Staphylococcus aureus subsp. aureus EMRSA16] gi|297590384|ref|ZP_06949023.1| deoxyribodipyrimidine photo-lyase [Staphylococcus aureus subsp. aureus MN8] gi|49241076|emb|CAG39754.1| putative DNA photolyase [Staphylococcus aureus subsp. aureus MRSA252] gi|257272380|gb|EEV04503.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus 55/2053] gi|257275671|gb|EEV07144.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus 65-1322] gi|257279306|gb|EEV09907.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus 68-397] gi|257282226|gb|EEV12361.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus E1410] gi|257284906|gb|EEV15025.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus M876] gi|282314314|gb|EFB44704.1| DNA photolyase [Staphylococcus aureus subsp. aureus C101] gi|282322560|gb|EFB52882.1| putative deoxyribodipyrimidine photolyase [Staphylococcus aureus subsp. aureus M899] gi|282325727|gb|EFB56035.1| deoxyribodipyrimidine photo-lyase [Staphylococcus aureus subsp. aureus WBG10049] gi|282327740|gb|EFB58022.1| deoxyribodipyrimidine photo-lyase [Staphylococcus aureus subsp. aureus WW2703/97] gi|282331923|gb|EFB61434.1| deoxyribodipyrimidine photo-lyase [Staphylococcus aureus subsp. aureus Btn1260] gi|282596273|gb|EFC01234.1| putative deoxyribodipyrimidine photolyase [Staphylococcus aureus subsp. aureus C160] gi|283790971|gb|EFC29786.1| putative deoxyribodipyrimidine photolyase [Staphylococcus aureus subsp. aureus A017934/97] gi|290921070|gb|EFD98131.1| putative deoxyribodipyrimidine photolyase [Staphylococcus aureus subsp. aureus M1015] gi|291095580|gb|EFE25841.1| deoxyribodipyrimidine photo-lyase [Staphylococcus aureus subsp. aureus 58-424] gi|291467618|gb|EFF10133.1| deoxyribodipyrimidine photo-lyase [Staphylococcus aureus subsp. aureus M809] gi|295128655|gb|EFG58286.1| deoxyribodipyrimidine photo-lyase [Staphylococcus aureus subsp. aureus EMRSA16] gi|297576683|gb|EFH95398.1| deoxyribodipyrimidine photo-lyase [Staphylococcus aureus subsp. aureus MN8] gi|312438887|gb|ADQ77958.1| deoxyribodipyrimidine photo-lyase [Staphylococcus aureus subsp. aureus TCH60] gi|315194306|gb|EFU24698.1| putative DNA photolyase [Staphylococcus aureus subsp. aureus CGS00] Length = 457 Score = 191 bits (484), Expect = 3e-46, Method: Compositional matrix adjust. Identities = 118/341 (34%), Positives = 178/341 (52%), Gaps = 20/341 (5%) Query: 142 LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPF 201 +N + YKV+T F K L D+ + + +P ++ F D F Sbjct: 129 FKASKTMNQQGEPYKVFTSFSKKWRPYLRHRDVYHYDLKSFEDFVIASPDDLV-FDDIAF 187 Query: 202 QAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWN 261 + I EQN + F + + Y RD TSQLS L+ G+L + +N Sbjct: 188 GSS----QIIEQNKW---QHFLDQDIQNYESGRDYLPEVLTSQLSVALAYGLLDIIEIFN 240 Query: 262 RLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSH 321 L + + ++ +++ ELI+REFY LM YP + F +I+W+++ Sbjct: 241 DLLARYDE----DEANYEAFIRELIFREFYYVLMTQYPETSY-QAFKSKYRQIKWSQNEA 295 Query: 322 LLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLL 381 AW +G TGFPIIDAA+ +L G+MHNR+RM+ + FL KDL +DW GE++F L+ Sbjct: 296 DFNAWCEGQTGFPIIDAAIMELTQTGFMHNRMRMVVSQFLTKDLFIDWTWGEKFFRKHLI 355 Query: 382 DGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIH 441 D D ASN GWQW+ASTG D+VPYFR+FNP Q +RFDP+ +I+ +LP N + +Y+H Sbjct: 356 DYDAASNIHGWQWSASTGTDAVPYFRMFNPIRQSERFDPKALYIKTYLPIFNQIDAKYLH 415 Query: 442 APHSWLDKN------DLSLNYPLPIVDHKKACHHTLNQYYA 476 + N +L +YP +VDH++ L + A Sbjct: 416 DTQR-NESNLFELGIELGRHYPRQMVDHQEKRTQVLAAFKA 455 >gi|304571328|dbj|BAJ15782.1| cryptochrome2 [Cardamine nipponica] gi|304571330|dbj|BAJ15783.1| cryptochrome2 [Cardamine nipponica] Length = 590 Score = 190 bits (483), Expect = 4e-46, Method: Compositional matrix adjust. Identities = 149/475 (31%), Positives = 234/475 (49%), Gaps = 38/475 (8%) Query: 17 DLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQKSLSQKG 76 DLRI DN AL AA H + V VFI PE+ Q ++ SL + +SL G Sbjct: 1 DLRIEDNPALAAAAH--EGSVFPVFIWCPEEEGQFYPGRASRWWLKQSLSHLSQSLRALG 58 Query: 77 IVFQYHQCSNFDDSIEWLDSYCLQ-QRVTKLFYNRQYE-INEVRRDKLLEKRLQHRVICK 134 + N +I LD C++ TK+ +N Y+ ++ VR + EK ++ + + Sbjct: 59 SELTLIKTHNTVSAI--LD--CIRVTGATKVVFNHLYDPVSLVRDHTVKEKLVEVGISVQ 114 Query: 135 SFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADL-----RSLPVPAIR---LTG 186 SF+ +L P I + + ++ + K ++ +++ + R +PV A Sbjct: 115 SFNGDLLYEPWEIYCEKGKPFTSFSSYWKKCLEMSIESVMLPPPWRLMPVTAAAEAVWAC 174 Query: 187 PVTPSNIPRFFDYPFQAI-DPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245 + + + P A+ + G NA IL +F ++++ Y + TS L Sbjct: 175 SIEELGLENEAEKPSNALLTRAWSPGWSNADKILNEFIEKQLIDYAKNSKKVVGNSTSLL 234 Query: 246 SPYLSIGVLSPR---QCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYP--- 299 SPYL G +S R QC R+K+ + A +L + RE+ R++ +P Sbjct: 235 SPYLHYGEISVRRVFQC-ARMKQIIWAKNSEGDESADLFLKGIGLREYSRYICFNFPFTH 293 Query: 300 --SVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMIT 357 S+ F PW + D +AW+QG TG+P++DA MR+L GW+HNR+R+I Sbjct: 294 EQSLLSHLRFFPW------DADVEKFKAWRQGRTGYPLVDAGMRELWATGWVHNRIRVIV 347 Query: 358 ASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKR 417 +SF VK LL+ W+ G +YF LLD DL + GWQ+ + + D R+ NP IQG + Sbjct: 348 SSFAVKFLLLPWKWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELDRLDNPAIQGAK 407 Query: 418 FDPQGTFIRHWLPELNNVPTQYIH----APHSWLDKN--DLSLNYPLPIVDHKKA 466 FDP+G +IR WLPEL +P+++IH AP + L + +L NY PIVD A Sbjct: 408 FDPEGDYIRQWLPELARLPSEWIHHPWDAPLTVLKASGVELGTNYAKPIVDIDTA 462 >gi|298370358|ref|ZP_06981674.1| deoxyribodipyrimidine photolyase [Neisseria sp. oral taxon 014 str. F0314] gi|298281818|gb|EFI23307.1| deoxyribodipyrimidine photolyase [Neisseria sp. oral taxon 014 str. F0314] Length = 473 Score = 190 bits (483), Expect = 4e-46, Method: Compositional matrix adjust. Identities = 152/492 (30%), Positives = 220/492 (44%), Gaps = 82/492 (16%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 LVW R +LR+TDN AL AA V VF A + RQ+ F+ AS ++ + Sbjct: 35 LVWFRRNLRLTDNAALAAAVRRG-LPVAGVFAA-------DAANPRQAAFLRASAAELHR 86 Query: 71 SLSQKGIVFQYHQ---------CSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDK 121 +L+++GI Q + D ++ D C+ + NR + + + Sbjct: 87 ALAERGIPLFVAQEAETDIPRLAAELDAAVVVADEGCMADETAR--DNRIWRVLDA---- 140 Query: 122 LLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQ--ADLR---S 176 + R RV +D I++ + Y + P+R+A ++ Q AD R S Sbjct: 141 --QGRAFERV-----NDGAAFARAEIMDEHGRPYFEFAPYRQAWLRAFAQRFADRRPSES 193 Query: 177 LPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFP------IGEQNALHILRKFCKEKVYYY 230 LPV + + P PF A+ P GE +F + + Y Sbjct: 194 LPV-GFQTAFGILP---------PFPALPETAPQEWRQQGGEAAGRRQWARFAAD-IGNY 242 Query: 231 VEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREF 290 PA +GT ++ YL+ G LSPR+ K GA WL+ L+ R+F Sbjct: 243 PLMSGFPAKKGTGRVGAYLAAGCLSPREL----------AQAAAKRGAAQWLDNLVRRDF 292 Query: 291 YRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMH 350 +R +M F+ + P I+W +L W+QG TGFP+IDAAMR LN GW+H Sbjct: 293 FRQVM-FHRPEAAAEALRPEYRGIKWPGGQDVLSRWQQGQTGFPLIDAAMRSLNATGWLH 351 Query: 351 NRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIF- 409 LR A+FL + LL DWR G +F L D D ASN G WQ AA F +F Sbjct: 352 PALRAAAAAFLCRILLADWRHGAAWFARCLTDYDPASNTGNWQEAAGV-------FGLFS 404 Query: 410 ----NPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSL-NYPLPIVDHK 464 NP +Q ++ DP GTFIR ++PEL ++P +HAP WL + + YP P+ D Sbjct: 405 GGAANPVLQAQQLDPDGTFIRRYVPELAHLPKDVVHAP--WLARASVDTHGYPPPMAD-- 460 Query: 465 KACHHTLNQYYA 476 C Y A Sbjct: 461 --CARQGRAYAA 470 >gi|71748528|ref|XP_823319.1| deoxyribodipyrimidine photolyase [Trypanosoma brucei TREU927] gi|70832987|gb|EAN78491.1| deoxyribodipyrimidine photolyase, putative [Trypanosoma brucei] Length = 568 Score = 190 bits (483), Expect = 4e-46, Method: Compositional matrix adjust. Identities = 150/485 (30%), Positives = 220/485 (45%), Gaps = 75/485 (15%) Query: 14 LRNDLRITDNKALYAACHNSDAK---VIAVFIATPEQW---RQHGISARQSHFIYASLLQ 67 R D R+TDN L + + VI +F P Q + F+ SL Sbjct: 27 FRRDFRVTDNTGLLLLIERAGKQSLPVIPLFFFNPRQCDPDKNPYFGKACFEFLCQSLKH 86 Query: 68 VQK-SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 + L + + + C D +E + S + +L +NR +RD LE+ Sbjct: 87 LDTVQLGGRLVCLRGSDC----DCLEVVRSSGYD--IKQLGFNRDITPFARKRDLQLEEW 140 Query: 127 LQHR-VICKSFD-DSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL 184 R V C + + D LLPP + N + Y+V++PF +A++Q +D+++ P P Sbjct: 141 CVKRGVRCVTSNMDYTLLPPDVVTNKNGKPYRVFSPFYRAVLQEHF-SDIQA-PNPKATT 198 Query: 185 TGPV-TPSNIPR---------------------FFDY-PFQAIDPMFP-----IGEQNAL 216 G + T S++ DY A+ FP G L Sbjct: 199 IGDIFTGSHVKEDVKATVDQARRSAMAADEFSSLVDYVDLAALPQTFPELVDRGGRSEGL 258 Query: 217 HILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKS 276 L K Y + DIP + T+ LSP+L G +S R+ V LL K Sbjct: 259 LRLASVASAKNYSAIRD-DIPGDK-TTHLSPHLKFGTISIREAMQ------VALLHLGKE 310 Query: 277 GAFSWLNELIWREFYRHLMAFYPSVCMGK--------------------PFIPWTEKIEW 316 AF+ +LIWREFY L+ P + +G+ PF+ +W Sbjct: 311 HAFT--RQLIWREFYSMLLYHNPRLALGQLKMDVAPQGERQCRATLANEPFLEKYSNFQW 368 Query: 317 NKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYF 376 + A+K G TGFP++DAA+R L GW HNR RM+ A+FLVK L VDWR GE ++ Sbjct: 369 EWNDAEFTAFKSGATGFPLVDAAVRCLTKTGWCHNRCRMLIANFLVKVLFVDWREGERWY 428 Query: 377 MSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVP 436 + +D D+A+N+GGW W++ G D+ PYFR FNP Q + DPQ FI+ W+PEL NV Sbjct: 429 ATVAVDYDVANNSGGWLWSSGQGADAQPYFRFFNPFRQSAQHDPQAVFIKQWVPELRNVS 488 Query: 437 TQYIH 441 + IH Sbjct: 489 VRTIH 493 >gi|97048023|sp|P77967|CRYD_SYNY3 RecName: Full=Cryptochrome DASH gi|28374085|pdb|1NP7|A Chain A, Crystal Structure Analysis Of Synechocystis Sp. Pcc6803 Cryptochrome gi|28374086|pdb|1NP7|B Chain B, Crystal Structure Analysis Of Synechocystis Sp. Pcc6803 Cryptochrome Length = 489 Score = 190 bits (483), Expect = 4e-46, Method: Compositional matrix adjust. Identities = 149/485 (30%), Positives = 243/485 (50%), Gaps = 43/485 (8%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQ-HGISAR----QSHFIYASL 65 LVW RNDLR+ D++ L+ A S + AV+ P Q+ Q H A+ +S+F+ S+ Sbjct: 9 LVWFRNDLRLHDHEPLHRAL-KSGLAITAVYCYDPRQFAQTHQGFAKTGPWRSNFLQQSV 67 Query: 66 LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125 + +SL + G + + + + Q ++Y+R+ E+ ++ L K Sbjct: 68 QNLAESLQKVGNKLLV--TTGLPEQV--IPQIAKQINAKTIYYHREVTQEELDVERNLVK 123 Query: 126 RLQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQ------ADLRSLP 178 +L I K + S L P + + ++T FRK + + + A + LP Sbjct: 124 QLTILGIEAKGYWGSTLCHPEDLPFSIQDLPDLFTKFRKDIEKKKISIRPCFFAPSQLLP 183 Query: 179 VPAIRLTGPVTPSNIPRFF---DYPFQAIDPMFPIGEQNALHILRKFC--KEKVYYYVEQ 233 P I+L P P FF ++ +++ F GE L L+ + +++ Y E Sbjct: 184 SPNIKLELTAPP---PEFFPQINFDHRSV-LAFQGGETAGLARLQDYFWHGDRLKDYKET 239 Query: 234 RD-IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWL-NELIWREFY 291 R+ + +S+ SP+L++G LSPR + +K + + + + WL EL+WR+F+ Sbjct: 240 RNGMVGADYSSKFSPWLALGCLSPRFIYQEVKRYEQE---RVSNDSTHWLIFELLWRDFF 296 Query: 292 RHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHN 351 R + Y + + + + W +D + W+ G TG+P++DA MR+LN G+M N Sbjct: 297 RFVAQKYGNKLFNRGGL-LNKNFPWQEDQVRFELWRSGQTGYPLVDANMRELNLTGFMSN 355 Query: 352 RLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNP 411 R R ASFL K+L +DWR G E+F S L+D D+ SN G W + A GND+ FR FN Sbjct: 356 RGRQNVASFLCKNLGIDWRWGAEWFESCLIDYDVCSNWGNWNYTAGIGNDARD-FRYFNI 414 Query: 412 TIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKN--------DLSLNYPLPIVDH 463 Q +++DPQGT++RHWLPEL N+P IH P WL L ++YP P V+ Sbjct: 415 PKQSQQYDPQGTYLRHWLPELKNLPGDKIHQP--WLLSATEQKQWGVQLGVDYPRPCVNF 472 Query: 464 KKACH 468 ++ Sbjct: 473 HQSVE 477 >gi|261333249|emb|CBH16244.1| DNA repair enzyme, putative [Trypanosoma brucei gambiense DAL972] Length = 568 Score = 190 bits (482), Expect = 4e-46, Method: Compositional matrix adjust. Identities = 150/485 (30%), Positives = 220/485 (45%), Gaps = 75/485 (15%) Query: 14 LRNDLRITDNKALYAACHNSDAK---VIAVFIATPEQW---RQHGISARQSHFIYASLLQ 67 R D R+TDN L + + VI +F P Q + F+ SL Sbjct: 27 FRRDFRVTDNTGLLLLIERAGKQSLPVIPLFFFNPRQCDPDKNPYFGKACFEFLCQSLKH 86 Query: 68 VQK-SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 + L + + + C D +E + S + +L +NR +RD LE+ Sbjct: 87 LDTVQLGGRLVCLRGSDC----DCLEVVRSSGYD--IKQLGFNRDITPFARKRDLQLEEW 140 Query: 127 LQHR-VICKSFD-DSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL 184 R V C + + D LLPP + N + Y+V++PF +A++Q +D+++ P P Sbjct: 141 CVKRGVRCVTSNMDYTLLPPDVVTNKNGKPYRVFSPFYRAVLQEHF-SDIQA-PNPKATT 198 Query: 185 TGPV-TPSNIPR---------------------FFDY-PFQAIDPMFP-----IGEQNAL 216 G + T S++ DY A+ FP G L Sbjct: 199 IGDIFTGSHVKEDVKATVDQARRSAMAADEFSSLVDYVDLAALPQTFPELVDRGGRSEGL 258 Query: 217 HILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKS 276 L K Y + DIP + T+ LSP+L G +S R+ V LL K Sbjct: 259 LRLASVASAKNYSAIRD-DIPGDK-TTHLSPHLKFGTISIREAMQ------VALLHLGKE 310 Query: 277 GAFSWLNELIWREFYRHLMAFYPSVCMG--------------------KPFIPWTEKIEW 316 AF+ +LIWREFY L+ P + +G +PF+ +W Sbjct: 311 HAFT--RQLIWREFYSMLLYHNPRLALGQLKMDVALQGERQCRATLANEPFLEKYSNFQW 368 Query: 317 NKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYF 376 + A+K G TGFP++DAA+R L GW HNR RM+ A+FLVK L VDWR GE ++ Sbjct: 369 EWNDAEFTAFKSGATGFPLVDAAVRCLTKTGWCHNRCRMLIANFLVKVLFVDWREGERWY 428 Query: 377 MSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVP 436 + +D D+A+N+GGW W++ G D+ PYFR FNP Q + DPQ FI+ W+PEL NV Sbjct: 429 ATVAVDYDVANNSGGWLWSSGQGADAQPYFRFFNPFRQSAQHDPQAVFIKQWVPELRNVS 488 Query: 437 TQYIH 441 + IH Sbjct: 489 VRTIH 493 >gi|158318950|ref|YP_001511458.1| deoxyribodipyrimidine photo-lyase [Frankia sp. EAN1pec] gi|158114355|gb|ABW16552.1| Deoxyribodipyrimidine photo-lyase [Frankia sp. EAN1pec] Length = 409 Score = 190 bits (482), Expect = 4e-46, Method: Compositional matrix adjust. Identities = 123/371 (33%), Positives = 171/371 (46%), Gaps = 33/371 (8%) Query: 123 LEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAI 182 L+ +L R +C + PG + Y+V+TPF +A ++ + Sbjct: 54 LDAQLGGR-LCVRTGSPYAVAPGRLRKADGTSYRVFTPFYRAWKEHGWR----------- 101 Query: 183 RLTGPVTPSNI----PRFFDYPFQAI--DPMF------PIGEQNALHILRKFCKEKVYYY 230 GP P++ P D + I DP P GE A LR F E + Y Sbjct: 102 ---GPAIPADPVWLQPADLDGGSEPIPADPELGGTELPPAGEHAAHERLRAFLTESLAGY 158 Query: 231 VEQRDIPAI---QGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIW 287 RD PA G + + + A + +EL W Sbjct: 159 AAHRDEPAAASESGDAVPGWSGASRAGGAGGAGGAGGADAAGGGGGLAGSAEKFRSELAW 218 Query: 288 REFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIG 347 REFY ++A PS + + +AWK G TG+PI+DA MRQL G Sbjct: 219 REFYADVLAGTPSSARTD-LTDTLAALAYEPPGDTFEAWKWGRTGYPIVDAGMRQLLAEG 277 Query: 348 WMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFR 407 W+HNR+RMI ASF+ KDL V G +++ +L+DGDLASNN GWQW A TG D+ PYFR Sbjct: 278 WVHNRVRMIEASFVCKDLNVHRTHGARWYLERLVDGDLASNNHGWQWTAGTGTDAAPYFR 337 Query: 408 IFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKAC 467 +FNP QG++FDP G +IR W+PEL +P +H P W YP P+VDH Sbjct: 338 VFNPVSQGRKFDPAGEYIRRWVPELRGLPPDAVHEP--WKLPAGPPNGYPRPVVDHAVER 395 Query: 468 HHTLNQYYAAK 478 L+++ A+ Sbjct: 396 REALDRHARAR 406 >gi|218296790|ref|ZP_03497496.1| Deoxyribodipyrimidine photo-lyase [Thermus aquaticus Y51MC23] gi|218242879|gb|EED09413.1| Deoxyribodipyrimidine photo-lyase [Thermus aquaticus Y51MC23] Length = 417 Score = 190 bits (482), Expect = 5e-46, Method: Compositional matrix adjust. Identities = 135/427 (31%), Positives = 199/427 (46%), Gaps = 43/427 (10%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 ++LVW R DLR+ D+ AL A S ++ + + P R S R+ + ++ + Sbjct: 1 MNLVWHRGDLRLKDHPALLQAL--SQGPLVGLVVLDPNNLR---TSPRRRAWFLENVRAL 55 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128 + + ++G + + E + + + ++ + Y RD E L Sbjct: 56 RAAYRERGGALWVVEGPPW----EVVPQVARRLKAKAVYALKSYTPYGRYRDARTEAALG 111 Query: 129 HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188 V L+PP H +VYTPF + N D Sbjct: 112 --VPLHLLPAPHLIPPDLPRAH-----RVYTPFSR----NFQGLDPPLPAP--------E 152 Query: 189 TPSNIPRFFDYPFQAIDPMFPI---GEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245 P + P + DP P+ GE+ A L F + K+ Y +RD +G S+L Sbjct: 153 ALPQAPEEGEIPQE--DPGLPLPEPGERAARARLHAFLEAKLPRYPLERDRLDGEGGSRL 210 Query: 246 SPYLSIGVLSPRQC-WNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304 SPY ++GVLSPR+ W L+ + GA W+ EL+WR+F HL+ +P + Sbjct: 211 SPYFALGVLSPREAAWEALR--------RGGEGARKWVAELLWRDFSYHLLYHFPEMAQ- 261 Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364 + E + W +D L QAW G TG P++DAAMR+L G++ NR RM A F VK Sbjct: 262 RALDARFEALPWTEDEELFQAWYLGKTGVPLVDAAMRELQATGFLSNRARMAVAQFAVKY 321 Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424 LL+ W+ EE F LLDGD A N GWQWA G D+ PYFR+FN QG+R DP G + Sbjct: 322 LLLPWQRAEEAFRHLLLDGDRAVNLQGWQWAGGLGVDAAPYFRVFNLVEQGRRHDPDGAW 381 Query: 425 IRHWLPE 431 +R + PE Sbjct: 382 LRRFAPE 388 >gi|322494540|emb|CBZ29842.1| putative DNA repair enzyme [Leishmania mexicana MHOM/GT/2001/U1103] Length = 541 Score = 190 bits (482), Expect = 5e-46, Method: Compositional matrix adjust. Identities = 155/550 (28%), Positives = 237/550 (43%), Gaps = 102/550 (18%) Query: 4 TTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAV---FIATP---EQWRQHGISARQ 57 T V L R DLR+ DN L A C+ + + I V F P ++ R Sbjct: 22 TEQEEVALFLFRRDLRVVDNTGLQALCNEAARRSIPVLPAFFFNPIQCDKKRNPYFGDAF 81 Query: 58 SHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQ------RVTKLFYNRQ 111 F SL+ + + G + + D CL++ V L +N Sbjct: 82 FQFFCESLVDLDGATQLNGGLV----------CLRGSDEDCLRRIRDGGYEVKVLGFNED 131 Query: 112 YEINEVRRDKLLEKRL-QHRVICKSF-DDSVLLPPGSILNHALQMYKVYTPF-------- 161 Y + RD+LL + ++C + D L P ++ + Q Y V+TPF Sbjct: 132 YTPFALVRDRLLRDYADKQGIVCVTGPHDYSLRPLDEVVKDSEQPYSVFTPFYNKFTAEH 191 Query: 162 ----RKALIQNL--VQADLRSLPVPAIR--LTGP-VTPSNIPRFFDYPFQAIDPMFPIGE 212 K L+ N+ VQ+ L S P + L P + +++P+ D+ G Sbjct: 192 ARKVAKPLLVNVRKVQSMLVSQPKKCLEHHLVDPALLYTHMPQVQDHG----------GR 241 Query: 213 QNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLI 272 L R C E++ Y + RD A TS LSP++ G +S R+ W+ + Sbjct: 242 TEGLK--RLACVERLKQYADVRDDIAGDCTSHLSPHMKCGTVSTREVWH--------ASV 291 Query: 273 KPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK--------------------PFIPWTE 312 + + +L+WREFY L P + G+ PF P + Sbjct: 292 QALGTGHPFTRQLVWREFYAMLAFTRPRLLQGQLNSFIGQKDIVKATQPKQNAPFQPSYD 351 Query: 313 KIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIG 372 +W + +A+K+G TG P++DAA+R L GW HNR R++ ++F VK L +DWR Sbjct: 352 DYKWRWKAEHFEAFKEGRTGVPLVDAAVRCLTATGWCHNRCRLVISNFAVKVLGIDWREC 411 Query: 373 EEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPEL 432 E +F + +D D+A+NNGGW W++ G D+ PYFR FN Q +RFDP F+ W+PEL Sbjct: 412 ERWFATVAVDYDVANNNGGWLWSSGQGADAQPYFRTFNAFRQSERFDPDCKFVFQWVPEL 471 Query: 433 NNVPTQYIH------------APHSWLDK-------NDLSLNYPLPIVDHKKACHHTLNQ 473 VP +H A ++ K + +YP PIVD K A + + Sbjct: 472 AKVPPSVVHHWEEYCARARDKATGTYSRKRGAQGKAEEYPTSYPAPIVDIKAATKAVIEE 531 Query: 474 Y--YAAKKQS 481 Y Y K+S Sbjct: 532 YKKYGKYKES 541 >gi|94965681|emb|CAG28805.1| cryptochrome1 [Brassica napus] gi|95140047|emb|CAC87903.2| cryptochrome 1 [Brassica napus] Length = 680 Score = 190 bits (482), Expect = 5e-46, Method: Compositional matrix adjust. Identities = 153/501 (30%), Positives = 237/501 (47%), Gaps = 47/501 (9%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 +VW R DLR+ DN AL AA VIAVF+ PE+ + ++ SL Q+ Sbjct: 13 IVWFRRDLRVEDNPALAAAVRA--GPVIAVFVWAPEEEGHYQPGRVSRWWLKNSLAQLDS 70 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130 SL G + + DS+ L +++F+N Y+ + RD + L Sbjct: 71 SLRSLGTCLITKRST---DSVASLLEVVKSTGASQIFFNHLYDPLSLVRDHRAKDALTAE 127 Query: 131 VIC-KSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189 I KSF+ +L P + + + + ++ F + + + LP P ++G V+ Sbjct: 128 GIAVKSFNADLLYEPWEVTDELGRPFSMFAAFWERCLSMPYDPESPLLP-PKKIISGDVS 186 Query: 190 P--SNIPRFFDYPFQAIDPMFP----IGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS 243 ++ F D + + + G NA L F + Y + R TS Sbjct: 187 KCVADTLIFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSATTS 246 Query: 244 QLSPYLSIGVLSPRQCW--------------NRLKEEFVDLLIKPKSGAFSWLNELIWRE 289 LSP+L G +S R+ + N+ EE V+L +K + RE Sbjct: 247 FLSPHLHFGEVSVRKVFHLLRIKQVAWANEGNQAGEESVNLFLK----------SIGLRE 296 Query: 290 FYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWM 349 + R++ +P +P + + W D + +AW+QG TG+P++DA MR+L GW+ Sbjct: 297 YSRYISFNHP-YSHERPLLGHLKFFPWAVDENYFKAWRQGRTGYPLVDAGMRELWATGWL 355 Query: 350 HNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIF 409 H+R+R++ +SF VK L + WR G +YF LLD DL S+ GWQ+ T DS + RI Sbjct: 356 HDRIRVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYITGTLPDSREFDRID 415 Query: 410 NPTIQGKRFDPQGTFIRHWLPELNNVPTQYIH----APHSWLDKNDLSL--NYPLPIV-- 461 NP +G +FDP G ++R WLPEL+ +PT++IH AP S L + L NYP PIV Sbjct: 416 NPQFEGYKFDPNGEYVRRWLPELSRLPTEWIHHPWNAPESVLQAAGIELGSNYPRPIVGL 475 Query: 462 DHKKA-CHHTLNQYYAAKKQS 481 D KA H L+Q + + S Sbjct: 476 DEAKARLHEALSQMWQLEAAS 496 >gi|7648568|gb|AAF65584.1|AF139916_5 hypothetical DNA photolyase [Brevibacterium linens] Length = 487 Score = 190 bits (482), Expect = 5e-46, Method: Compositional matrix adjust. Identities = 146/464 (31%), Positives = 213/464 (45%), Gaps = 56/464 (12%) Query: 3 ATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQ----- 57 +T+ + LVW R+DLR+ D++AL AA +D +VIAV+I E + G+ R Sbjct: 2 STSGEDLTLVWFRDDLRVADHEALTAA--RADGRVIAVWIR--ETRDEEGLGPRPLGGAC 57 Query: 58 SHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEV 117 + + SL + + LS GI + ++ S VT + + R+Y Sbjct: 58 RWWAHESLTVLHEELSDLGIPLLFAAGRAEKIIVQLASSLG----VTAVRWTRRYASASR 113 Query: 118 RRDKLLEKRLQHR-VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRS 176 D ++ L + S ++L+ P + + YKV+TPF KA+ V D+ Sbjct: 114 ALDGQIKTVLNDQGFTVHSHTGALLVEPWTAAPQSSDHYKVFTPFWKAVAGRDV-GDV-- 170 Query: 177 LPVPAIRLTGPVTPSNIPRFFDYPF------------------------------QAIDP 206 LP P + P++ + + R + P I Sbjct: 171 LPKPQAQ--SPLSQTLLSRAHECPAVMELDGLGLLDGTETGAGEAAAASGPRWWQDTIAG 228 Query: 207 MFPIGEQNALHILRKFCKEKVYYYVEQRDIPA-IQGTSQLSPYLSIGVLSPRQCWNRLKE 265 + G + A L + Y +D+P+ TS+LSP L G LSPRQ + Sbjct: 229 HWSPGLRAAEDQLDDLSA-IIDGYTTSKDVPSDAASTSRLSPRLRHGELSPRQLLQAART 287 Query: 266 EFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQA 325 L + A W+ +L WREF HL YP + P P + D L Sbjct: 288 --TSSLTQDDRAA--WIRQLYWREFSWHLTYHYPHID-SAPIRPEFHNFPYEDDDDALTH 342 Query: 326 WKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDL 385 W+ G TG+P+IDA M QL GWMHNR+RM+TASFL K+LL W GE++F L+D D Sbjct: 343 WRAGTTGYPLIDAGMAQLWQTGWMHNRVRMVTASFLTKNLLQHWWFGEQWFWDTLVDADE 402 Query: 386 ASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWL 429 A+N WQW A +G D+ PYFR+FNP Q +RFDP +I WL Sbjct: 403 ANNPVSWQWVAGSGADAAPYFRVFNPERQRERFDPDDAYIEDWL 446 >gi|282918481|ref|ZP_06326218.1| deoxyribodipyrimidine photo-lyase [Staphylococcus aureus subsp. aureus C427] gi|282317615|gb|EFB47987.1| deoxyribodipyrimidine photo-lyase [Staphylococcus aureus subsp. aureus C427] Length = 457 Score = 190 bits (482), Expect = 6e-46, Method: Compositional matrix adjust. Identities = 118/341 (34%), Positives = 178/341 (52%), Gaps = 20/341 (5%) Query: 142 LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPF 201 +N + YKV+T F K L D+ + + +P ++ F D F Sbjct: 129 FKASKTMNQQGEPYKVFTSFSKKWRPYLRYRDVYHYDLKSFEDFVIASPDDLV-FDDIAF 187 Query: 202 QAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWN 261 + I EQN + F + + Y RD TSQLS L+ G+L + +N Sbjct: 188 GSS----QIIEQNKW---QHFLDQDIQNYESGRDYLPEVLTSQLSVALAYGLLDIIEIFN 240 Query: 262 RLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSH 321 L + + ++ +++ ELI+REFY LM YP + F +I+W+++ Sbjct: 241 DLLARYDE----DEANYEAFIRELIFREFYYVLMTQYPETSY-QAFKSKYRQIKWSQNEA 295 Query: 322 LLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLL 381 AW +G TGFPIIDAA+ +L G+MHNR+RM+ + FL KDL +DW GE++F L+ Sbjct: 296 DFNAWCEGQTGFPIIDAAIMELTQTGFMHNRMRMVVSQFLTKDLFIDWTWGEKFFRKHLI 355 Query: 382 DGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIH 441 D D ASN GWQW+ASTG D+VPYFR+FNP Q +RFDP+ +I+ +LP N + +Y+H Sbjct: 356 DYDAASNIHGWQWSASTGTDAVPYFRMFNPIRQSERFDPKALYIKTYLPIFNQIDAKYLH 415 Query: 442 APHSWLDKN------DLSLNYPLPIVDHKKACHHTLNQYYA 476 + N +L +YP +VDH++ L + A Sbjct: 416 DTQR-NESNLFELGIELGRHYPRQMVDHQEKRTQVLAAFKA 455 >gi|15923681|ref|NP_371215.1| putative deoxyribodipyrimidine photolyase [Staphylococcus aureus subsp. aureus Mu50] gi|15926368|ref|NP_373901.1| hypothetical protein SA0646 [Staphylococcus aureus subsp. aureus N315] gi|148267151|ref|YP_001246094.1| deoxyribodipyrimidine photo-lyase [Staphylococcus aureus subsp. aureus JH9] gi|150393199|ref|YP_001315874.1| deoxyribodipyrimidine photo-lyase [Staphylococcus aureus subsp. aureus JH1] gi|156979019|ref|YP_001441278.1| hypothetical protein SAHV_0688 [Staphylococcus aureus subsp. aureus Mu3] gi|253315330|ref|ZP_04838543.1| hypothetical protein SauraC_04087 [Staphylococcus aureus subsp. aureus str. CF-Marseille] gi|255005483|ref|ZP_05144084.2| hypothetical protein SauraM_03410 [Staphylococcus aureus subsp. aureus Mu50-omega] gi|257794988|ref|ZP_05643967.1| deoxyribodipyrimidine photo-lyase type I [Staphylococcus aureus A9781] gi|258418305|ref|ZP_05682570.1| deoxyribodipyrimidine photo-lyase type I [Staphylococcus aureus A9763] gi|258421602|ref|ZP_05684527.1| deoxyribodipyrimidine photo-lyase type I [Staphylococcus aureus A9719] gi|258430795|ref|ZP_05688507.1| deoxyribodipyrimidine photo-lyase [Staphylococcus aureus A9299] gi|258441712|ref|ZP_05690984.1| deoxyribodipyrimidine photo-lyase type I [Staphylococcus aureus A8115] gi|258445852|ref|ZP_05694029.1| deoxyribodipyrimidine photo-lyase type I [Staphylococcus aureus A6300] gi|258449657|ref|ZP_05697759.1| deoxyribodipyrimidine photo-lyase type I [Staphylococcus aureus A6224] gi|269202312|ref|YP_003281581.1| deoxyribodipyrimidine photolyase, putative [Staphylococcus aureus subsp. aureus ED98] gi|282894455|ref|ZP_06302684.1| deoxyribodipyrimidine photo-lyase [Staphylococcus aureus A8117] gi|282926553|ref|ZP_06334183.1| deoxyribodipyrimidine photo-lyase [Staphylococcus aureus A10102] gi|295406409|ref|ZP_06816215.1| deoxyribodipyrimidine photo-lyase [Staphylococcus aureus A8819] gi|296274755|ref|ZP_06857262.1| deoxyribodipyrimidine photo-lyase [Staphylococcus aureus subsp. aureus MR1] gi|297245136|ref|ZP_06929010.1| deoxyribodipyrimidine photo-lyase [Staphylococcus aureus A8796] gi|13700582|dbj|BAB41879.1| SA0646 [Staphylococcus aureus subsp. aureus N315] gi|14246460|dbj|BAB56853.1| putative deoxyribodipyrimidine photolyase [Staphylococcus aureus subsp. aureus Mu50] gi|147740220|gb|ABQ48518.1| Deoxyribodipyrimidine photo-lyase type I [Staphylococcus aureus subsp. aureus JH9] gi|149945651|gb|ABR51587.1| Deoxyribodipyrimidine photo-lyase [Staphylococcus aureus subsp. aureus JH1] gi|156721154|dbj|BAF77571.1| hypothetical protein [Staphylococcus aureus subsp. aureus Mu3] gi|257788960|gb|EEV27300.1| deoxyribodipyrimidine photo-lyase type I [Staphylococcus aureus A9781] gi|257839098|gb|EEV63577.1| deoxyribodipyrimidine photo-lyase type I [Staphylococcus aureus A9763] gi|257842528|gb|EEV66952.1| deoxyribodipyrimidine photo-lyase type I [Staphylococcus aureus A9719] gi|257849467|gb|EEV73437.1| deoxyribodipyrimidine photo-lyase [Staphylococcus aureus A9299] gi|257852181|gb|EEV76108.1| deoxyribodipyrimidine photo-lyase type I [Staphylococcus aureus A8115] gi|257855428|gb|EEV78366.1| deoxyribodipyrimidine photo-lyase type I [Staphylococcus aureus A6300] gi|257857165|gb|EEV80064.1| deoxyribodipyrimidine photo-lyase type I [Staphylococcus aureus A6224] gi|262074602|gb|ACY10575.1| deoxyribodipyrimidine photolyase, putative [Staphylococcus aureus subsp. aureus ED98] gi|282591446|gb|EFB96518.1| deoxyribodipyrimidine photo-lyase [Staphylococcus aureus A10102] gi|282763168|gb|EFC03299.1| deoxyribodipyrimidine photo-lyase [Staphylococcus aureus A8117] gi|294968554|gb|EFG44577.1| deoxyribodipyrimidine photo-lyase [Staphylococcus aureus A8819] gi|297177807|gb|EFH37056.1| deoxyribodipyrimidine photo-lyase [Staphylococcus aureus A8796] gi|312829185|emb|CBX34027.1| FAD binding domain of DNA photolyase family protein [Staphylococcus aureus subsp. aureus ECT-R 2] gi|315129365|gb|EFT85358.1| hypothetical protein CGSSa03_00150 [Staphylococcus aureus subsp. aureus CGS03] gi|329724512|gb|EGG61019.1| deoxyribodipyrimidine photo-lyase family protein [Staphylococcus aureus subsp. aureus 21172] Length = 457 Score = 190 bits (482), Expect = 6e-46, Method: Compositional matrix adjust. Identities = 134/471 (28%), Positives = 225/471 (47%), Gaps = 29/471 (6%) Query: 14 LRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQKSLS 73 L N + ++ L+ + + A + PE+ S ++ F +L + +SL Sbjct: 6 LLNRMFRMEHNPLFEYIYQQKEDIDACYFIIPEE-DMSSASDLKAQFYRGTLQRFYQSLH 64 Query: 74 QKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL---QHR 130 + + ++DD I S+C + ++++ + +L +R + R Sbjct: 65 AEKLT---PYVMSYDDII----SFCKENNISEVVIAGDIMSYHLEEYDILHQRSLFNEAR 117 Query: 131 VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTP 190 + + +N + YKV+T F + L D+ + + +P Sbjct: 118 IAVTLIRGNHYFKASKTMNQQGEPYKVFTSFYRKWRPYLRHRDVYHYDLKSFEDFVIASP 177 Query: 191 SNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLS 250 ++ F D F + + EQN + F + + Y RD TSQLS L+ Sbjct: 178 DDLV-FDDIAFGSS----QVIEQNKW---QHFLDQDIQNYESGRDYLPEVLTSQLSVALA 229 Query: 251 IGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPW 310 G+L + +N L + + ++ +++ ELI+REFY LM YP + F P Sbjct: 230 YGLLDIIEIFNDLLARYDE----DEANHEAFIRELIFREFYYVLMTQYPETSY-QAFKPK 284 Query: 311 TEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWR 370 +I+W+++ AW +G TGFPIIDAA+ +L G+MHNR+RM+ + FL KDL +DW Sbjct: 285 YRQIKWSQNEANFNAWCEGQTGFPIIDAAIMELTQTGFMHNRMRMVVSQFLTKDLFIDWT 344 Query: 371 IGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLP 430 GE++F L+D D ASN GWQW+ASTG D+VPYFR+FNP Q +RFD + +I+ +LP Sbjct: 345 WGEKFFRKHLIDYDAASNIHGWQWSASTGTDAVPYFRMFNPIRQSERFDAKALYIKTYLP 404 Query: 431 ELNNVPTQYIHAPHS-----WLDKNDLSLNYPLPIVDHKKACHHTLNQYYA 476 N + +Y+H + +L +YP +VDH++ L + A Sbjct: 405 IFNQIDAKYLHDTQRNESNLFEQGIELGSHYPRQMVDHQEKRTQVLATFKA 455 >gi|253732866|ref|ZP_04867031.1| deoxyribodipyrimidine photo-lyase [Staphylococcus aureus subsp. aureus TCH130] gi|253729231|gb|EES97960.1| deoxyribodipyrimidine photo-lyase [Staphylococcus aureus subsp. aureus TCH130] Length = 457 Score = 189 bits (481), Expect = 6e-46, Method: Compositional matrix adjust. Identities = 116/340 (34%), Positives = 176/340 (51%), Gaps = 18/340 (5%) Query: 142 LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPF 201 +N + YKV+T F K L D+ + + +P ++ F D F Sbjct: 129 FKASKTMNQQGEPYKVFTSFYKKWRPYLRHRDVYHYDLKSFEDFVIASPDDLV-FDDIAF 187 Query: 202 QAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWN 261 + I EQN + F + + Y RD TSQLS L+ G+L + +N Sbjct: 188 GSS----QIIEQNKW---QHFLDQDIQNYESGRDYLPEVLTSQLSVALAYGLLDIIEIFN 240 Query: 262 RLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSH 321 L + + ++ +++ ELI+REFY LM YP + F P +I+W+++ Sbjct: 241 DLLARYD----QDEANYEAFIRELIFREFYYVLMTQYPETSY-QAFKPKYRQIKWSQNET 295 Query: 322 LLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLL 381 W +G TGFPIIDAA+ +L G+MHNR+RM+ + FL KDL +DW GE++F L+ Sbjct: 296 DFNVWCEGQTGFPIIDAAIMELTQTGFMHNRMRMVVSQFLTKDLFIDWTWGEKFFRKHLI 355 Query: 382 DGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIH 441 D D ASN GWQW+ASTG D+VPYFR+FNP Q +RFD + +I+ +LP N + +Y+H Sbjct: 356 DYDAASNIHGWQWSASTGTDAVPYFRMFNPIRQSERFDAKALYIKTYLPIFNQIDAKYLH 415 Query: 442 APHS-----WLDKNDLSLNYPLPIVDHKKACHHTLNQYYA 476 + +L +YP +VDH++ L + A Sbjct: 416 DTQRNESNLFEQGIELGRHYPRQMVDHQEKRTQVLATFKA 455 >gi|313682739|ref|YP_004060477.1| deoxyribodipyrimidine photo-lyase [Sulfuricurvum kujiense DSM 16994] gi|313155599|gb|ADR34277.1| Deoxyribodipyrimidine photo-lyase [Sulfuricurvum kujiense DSM 16994] Length = 455 Score = 189 bits (481), Expect = 6e-46, Method: Compositional matrix adjust. Identities = 147/478 (30%), Positives = 221/478 (46%), Gaps = 43/478 (8%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 ++W R DLRI DN L + + +V+ +FI P R+ IY +LL ++ Sbjct: 4 ILWFRRDLRIEDNPLL-----SLEGEVLPIFIFDPNILSSLQNDDRRVSIIYNALLNLKS 58 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130 SL +G+ D +WL S + ++ + Y+ + RD+ + H Sbjct: 59 SLQMRGLDLALFYGKPVD-VFKWLLS---RHHFDEVCASGDYDHYALERDR----EISHL 110 Query: 131 VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRS-LPVPAIRLTGPVT 189 + S DD+ + P I+ + Y V+TPF +R +PV Sbjct: 111 LPFNSLDDTYIFRPDEIVKNDGTPYLVFTPFYNRAKSLFSPEHMREFIPVEQSLTDFEYD 170 Query: 190 PSNIPRFFDY---PFQA-----IDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQG 241 + R D+ P Q I +Q++ I K+ +Y + RD A+ G Sbjct: 171 SLHTIRQSDHTSKPMQLESIGFISQKLSSRQQSSPAIQLDQFASKIAHYSQDRDYMALNG 230 Query: 242 TSQLSPYLSIGVLSPRQC--WNRLKEEFVDLLIKPKSGAFS--WLNELIWREFYRHLMAF 297 TS LS L G LS R W +LI+ K G+ + + +LI+REFY L+ Sbjct: 231 TSGLSTQLRFGTLSVRAVLRW---------MLIQKKRGSDTEPFFRQLIFREFYAMLLYH 281 Query: 298 YPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMIT 357 +P + P+ + A+ TG PI+DA +R+L G MHNR RM+ Sbjct: 282 FPHLSEQNFRYPF----RGIANEEYFNAFCTAKTGVPIVDAGIRELLETGEMHNRARMLC 337 Query: 358 ASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKR 417 ASF K+LL+ W+ GE +F L D D ASN WQW+A TG D PYFRIFNP QGK+ Sbjct: 338 ASFFTKNLLLPWQWGEAFFAQHLNDYDAASNILSWQWSAGTGVDPQPYFRIFNPYAQGKK 397 Query: 418 FDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSL-NYPLPIVDHKKACHHTLNQY 474 FD G +IR W+P+L +V + +H + L+L +YP PIV K + L+ + Sbjct: 398 FDSDGVYIRRWMPQLASVSSTTLHNETALF---SLTLCDYPHPIVYQKTSAKRALDHF 452 >gi|297158620|gb|ADI08332.1| deoxyribodipyrimidine photo-lyase [Streptomyces bingchenggensis BCW-1] Length = 466 Score = 189 bits (481), Expect = 7e-46, Method: Compositional matrix adjust. Identities = 140/474 (29%), Positives = 221/474 (46%), Gaps = 31/474 (6%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 + V + DLR+ DN AL A +++ V+ +F+ + ++ F+ L Sbjct: 3 VRVSVALFTADLRVHDNPALDGALREAES-VVPLFVVDSGIRDADFVVPNRAVFLADCLA 61 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIE-----WLDSYCLQQRVTKLFYNRQYEINEVRRDK 121 + +L +G + ++ + + + R+ + + Sbjct: 62 DLDAALRARGGRLVVRRGDVVQETCRVAARVGAGAVHMAGGASGYAARREARLRVALARE 121 Query: 122 LLEKRLQHRVICKSFDDSVLLPPG-----SILNHALQMYKVYTPFRKALIQNLVQADL-- 174 E R+ H VL+P G S + + V+TP+ + +A L Sbjct: 122 RRELRV-HEGAVTVVAPGVLVPSGKSHSTSGGSQRKDHFAVFTPYYRRWRSEPWRAPLPA 180 Query: 175 -RSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQ 233 R + VP+IR T +++ P A + GE A LR++ + Y E+ Sbjct: 181 PRVVRVPSIRSAALPTAASL-----APGAASLDLPAGGETAARRRLRRWAAGPLADYAER 235 Query: 234 RDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRH 293 +D A TS+LSPYL G LSP + R L GA +++ +L WR+F+ Sbjct: 236 QDDLAGDATSRLSPYLHFGCLSPVEVARRA-------LDAGGPGAEAFVRQLAWRDFHLQ 288 Query: 294 LMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRL 353 ++A P + + P ++ W +D+ + AW G TG P++DAAMRQL GWM R Sbjct: 289 VLAARPDAAH-RDYRPRHDR--WRQDADEVAAWCAGLTGCPVVDAAMRQLTREGWMPGRA 345 Query: 354 RMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTI 413 R++ ASFL K L +DWR G +F++ L+DGD+A+N WQWAA TG D+ P RI NP I Sbjct: 346 RLLAASFLAKTLYIDWRTGARHFLALLVDGDIANNQLNWQWAAGTGTDTRP-GRILNPLI 404 Query: 414 QGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKAC 467 Q R DP+G ++R W+PEL V +H P + +L YP PIVD +A Sbjct: 405 QALRHDPEGEYVRRWVPELAAVQGPAVHRPWQLPGPDRAALAYPDPIVDLAEAA 458 >gi|57651532|ref|YP_185630.1| deoxyribodipyrimidine photolyase, putative [Staphylococcus aureus subsp. aureus COL] gi|87161809|ref|YP_493380.1| putative deoxyribodipyrimidine photolyase [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|151220872|ref|YP_001331694.1| hypothetical protein NWMN_0660 [Staphylococcus aureus subsp. aureus str. Newman] gi|161508955|ref|YP_001574614.1| deoxyribodipyrimidine photo-lyase [Staphylococcus aureus subsp. aureus USA300_TCH1516] gi|221140907|ref|ZP_03565400.1| deoxyribodipyrimidine photo-lyase [Staphylococcus aureus subsp. aureus str. JKD6009] gi|258452899|ref|ZP_05700893.1| conserved hypothetical protein [Staphylococcus aureus A5948] gi|262048427|ref|ZP_06021312.1| hypothetical protein SAD30_2154 [Staphylococcus aureus D30] gi|282921981|ref|ZP_06329679.1| deoxyribodipyrimidine photo-lyase [Staphylococcus aureus A9765] gi|284023713|ref|ZP_06378111.1| putative deoxyribodipyrimidine photolyase [Staphylococcus aureus subsp. aureus 132] gi|294849360|ref|ZP_06790103.1| deoxyribodipyrimidine photo-lyase [Staphylococcus aureus A9754] gi|304381695|ref|ZP_07364344.1| deoxyribodipyrimidine photo-lyase [Staphylococcus aureus subsp. aureus ATCC BAA-39] gi|57285718|gb|AAW37812.1| deoxyribodipyrimidine photolyase, putative [Staphylococcus aureus subsp. aureus COL] gi|87127783|gb|ABD22297.1| putative deoxyribodipyrimidine photolyase [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|150373672|dbj|BAF66932.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus str. Newman] gi|160367764|gb|ABX28735.1| possible deoxyribodipyrimidine photo-lyase [Staphylococcus aureus subsp. aureus USA300_TCH1516] gi|257859410|gb|EEV82264.1| conserved hypothetical protein [Staphylococcus aureus A5948] gi|259163515|gb|EEW48072.1| hypothetical protein SAD30_2154 [Staphylococcus aureus D30] gi|269940268|emb|CBI48645.1| putative DNA photolyase [Staphylococcus aureus subsp. aureus TW20] gi|282593834|gb|EFB98825.1| deoxyribodipyrimidine photo-lyase [Staphylococcus aureus A9765] gi|294823892|gb|EFG40318.1| deoxyribodipyrimidine photo-lyase [Staphylococcus aureus A9754] gi|302750590|gb|ADL64767.1| deoxyribodipyrimidine photolyase [Staphylococcus aureus subsp. aureus str. JKD6008] gi|304339798|gb|EFM05743.1| deoxyribodipyrimidine photo-lyase [Staphylococcus aureus subsp. aureus ATCC BAA-39] gi|315197666|gb|EFU28001.1| possible deoxyribodipyrimidine photo-lyase [Staphylococcus aureus subsp. aureus CGS01] gi|320139977|gb|EFW31838.1| FAD binding domain of DNA photolyase [Staphylococcus aureus subsp. aureus MRSA131] gi|320141933|gb|EFW33761.1| FAD binding domain of DNA photolyase [Staphylococcus aureus subsp. aureus MRSA177] gi|329313414|gb|AEB87827.1| Possible deoxyribodipyrimidine photo-lyase [Staphylococcus aureus subsp. aureus T0131] Length = 457 Score = 189 bits (481), Expect = 7e-46, Method: Compositional matrix adjust. Identities = 135/471 (28%), Positives = 224/471 (47%), Gaps = 29/471 (6%) Query: 14 LRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQKSLS 73 L N + ++ L+ + + A + PE+ S ++ F +L + +SL Sbjct: 6 LLNRMFRMEHNPLFEYIYQQKEDIDACYFIIPEE-DMSSASDLKAQFYRGTLQRFYQSLH 64 Query: 74 QKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL---QHR 130 + + ++DD I S+C + ++++ + +L +R + R Sbjct: 65 AEKLT---PYVMSYDDII----SFCKENNISEVVTAGDIMSYHLEEYDILHQRSLFNEAR 117 Query: 131 VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTP 190 + + +N + Y V+T F K L D+ + + +P Sbjct: 118 IAVTLIRGNHYFKASKTMNQQGEPYNVFTSFYKKWRPYLRHRDVYHYDLKSFEDFVIASP 177 Query: 191 SNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLS 250 ++ F D F + I EQN + F + + Y RD TSQLS L+ Sbjct: 178 DDLV-FDDIAFGSS----QIIEQNKW---QHFLDQDIQNYESGRDYLPEVLTSQLSVALA 229 Query: 251 IGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPW 310 G+L + +N L + + ++ +++ ELI+REFY LM YP + F P Sbjct: 230 YGLLDIIEIFNDLLARYDE----DEANYEAFIRELIFREFYYVLMTQYPETSY-QAFKPK 284 Query: 311 TEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWR 370 +I+W+++ AW +G TGFPIIDAA+ +L G+MHNR+RM+ + FL KDL +DW Sbjct: 285 YRQIKWSQNEADFNAWCEGQTGFPIIDAAIMELTQTGFMHNRMRMVVSQFLTKDLFIDWT 344 Query: 371 IGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLP 430 GE++F L+D D ASN GWQW+ASTG D+VPYFR+FNP Q +RFD + +I+ +LP Sbjct: 345 WGEKFFRKHLIDYDAASNIHGWQWSASTGTDAVPYFRMFNPIRQSERFDAKALYIKTYLP 404 Query: 431 ELNNVPTQYIHAPHS-----WLDKNDLSLNYPLPIVDHKKACHHTLNQYYA 476 N + +Y+H + +L +YP +VDH++ L + A Sbjct: 405 IFNQIDAKYLHDTQRNESNLFEQGIELGSHYPRQMVDHQEKRTQVLATFKA 455 >gi|88194464|ref|YP_499258.1| deoxyribodipyrimidine photolyase [Staphylococcus aureus subsp. aureus NCTC 8325] gi|87202022|gb|ABD29832.1| deoxyribodipyrimidine photolyase, putative [Staphylococcus aureus subsp. aureus NCTC 8325] gi|329728519|gb|EGG64952.1| FAD binding domain of DNA photolyase [Staphylococcus aureus subsp. aureus 21189] Length = 457 Score = 189 bits (480), Expect = 8e-46, Method: Compositional matrix adjust. Identities = 135/471 (28%), Positives = 224/471 (47%), Gaps = 29/471 (6%) Query: 14 LRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQKSLS 73 L N + ++ L+ + + A + PE+ S ++ F +L + +SL Sbjct: 6 LLNRMFRMEHNPLFEYIYQQKEDIDACYFIIPEE-DMSSASDLKAQFYRGTLQRFYQSLH 64 Query: 74 QKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL---QHR 130 + + ++DD I S+C + ++++ + +L +R + R Sbjct: 65 AEKLT---PYVMSYDDII----SFCKENNISEVVTAGDIMSYHLEEYDILHQRSLFNEAR 117 Query: 131 VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTP 190 + + +N + Y V+T F K L D+ + + +P Sbjct: 118 IAVTLIRGNHYFKASKTMNQQGEPYNVFTSFYKKWRPYLRHRDVYHYDLKSFENFVIASP 177 Query: 191 SNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLS 250 ++ F D F + I EQN + F + + Y RD TSQLS L+ Sbjct: 178 DDLV-FDDIAFGSS----QIIEQNKW---QHFLDQDIQNYESGRDYLPEVLTSQLSVALA 229 Query: 251 IGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPW 310 G+L + +N L + + ++ +++ ELI+REFY LM YP + F P Sbjct: 230 YGLLDIIEIFNDLLARYDE----DEANYEAFIRELIFREFYYVLMTQYPETSY-QAFKPK 284 Query: 311 TEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWR 370 +I+W+++ AW +G TGFPIIDAA+ +L G+MHNR+RM+ + FL KDL +DW Sbjct: 285 YRQIKWSQNEADFNAWCEGQTGFPIIDAAIMELTQTGFMHNRMRMVVSQFLTKDLFIDWT 344 Query: 371 IGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLP 430 GE++F L+D D ASN GWQW+ASTG D+VPYFR+FNP Q +RFD + +I+ +LP Sbjct: 345 WGEKFFRKHLIDYDAASNIHGWQWSASTGTDAVPYFRMFNPIRQSERFDAKALYIKTYLP 404 Query: 431 ELNNVPTQYIHAPHS-----WLDKNDLSLNYPLPIVDHKKACHHTLNQYYA 476 N + +Y+H + +L +YP +VDH++ L + A Sbjct: 405 IFNQIDAKYLHDTQRNESNLFEQGIELGSHYPRQMVDHQEKRTQVLATFKA 455 >gi|323473750|gb|ADX84356.1| Deoxyribodipyrimidine photo-lyase [Sulfolobus islandicus REY15A] Length = 433 Score = 189 bits (480), Expect = 8e-46, Method: Compositional matrix adjust. Identities = 148/476 (31%), Positives = 223/476 (46%), Gaps = 51/476 (10%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHG--ISARQSHFIYASLLQV 68 L R DLR+ DN L A + + KVI FI P Q S +F+ SL ++ Sbjct: 4 LFIFRRDLRLDDNTGLIKALEDCE-KVIPAFILDPRQVGNENEYKSEFAINFMINSLNEL 62 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128 L ++G + F + E + + L + V ++ N Y RD+ + K + Sbjct: 63 NDELRKRGSRLYVY----FGLAEEVIKN--LLKDVDAVYLNEDYTPFSKMRDERIRKYCE 116 Query: 129 HR-VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187 I KSF+D +L N Y+ +T F N+V+ PV Sbjct: 117 DTGKIMKSFEDYLLTSKNDFKN-----YRNFTTF-----YNVVKNKQIRKPVQ------- 159 Query: 188 VTPSNIPRFFDYPFQAIDPMFPI-GEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246 +N ++ + P GE+ K + +++D A + LS Sbjct: 160 ---NNYTNYYKNSLGDEHELPPRQGERGGRKEGIKLIERARQINYDRKDFVAEDNRTFLS 216 Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP 306 P+L G LS R+ + L + + + + +L WR+FY L+A+Y +P Sbjct: 217 PHLKFGTLSIREVYYSLLD------------SQAIIRQLYWRDFY-TLLAYYNERVFHEP 263 Query: 307 FIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLL 366 IEW + LLQAW +G TG+PIIDA MRQLN G M NR+RM+TA FLVK LL Sbjct: 264 LKREYNCIEWENNERLLQAWVEGKTGYPIIDAGMRQLNRTGDMPNRVRMLTAFFLVKVLL 323 Query: 367 VDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIR 426 +DWRIGE+YF S+L+D D + NNG WQW AS G D + FR+F+P Q +D + +++ Sbjct: 324 IDWRIGEKYFASKLIDYDPSVNNGNWQWIASVGTDYI--FRVFDPWKQQITYDQEAKYVK 381 Query: 427 HWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQSL 482 W+ EL + ++ IH + + K NYP PIVD + + Y +K + Sbjct: 382 RWVDELESYDSEIIHNAYKYTLK-----NYPKPIVDWRIRVNLAKRLYEVCRKSKI 432 >gi|307153163|ref|YP_003888547.1| cryptochrome, DASH family [Cyanothece sp. PCC 7822] gi|306983391|gb|ADN15272.1| cryptochrome, DASH family [Cyanothece sp. PCC 7822] Length = 495 Score = 189 bits (480), Expect = 9e-46, Method: Compositional matrix adjust. Identities = 154/501 (30%), Positives = 251/501 (50%), Gaps = 45/501 (8%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQ--HGISAR---QSHFIYASL 65 L+W RNDLR+ D++ L A A++I + Q+R+ +G ++ F+ SL Sbjct: 7 LIWYRNDLRLHDHEPLNKALKEK-AEIIPFYCFDERQFRKTSYGFPKTGNFRAQFLLESL 65 Query: 66 LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125 ++KSL ++G + + I + + ++T ++Y+++ E+ +K LE Sbjct: 66 ADLKKSLQERGSDLIIRK--GLPEKI--IPQLAQELKLTAVYYHQEVTAEELAVEKALES 121 Query: 126 RLQH-RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRK----ALIQNLVQADLRSL-PV 179 L RV +SF + L P ++ + +++T FRK A + + +SL P+ Sbjct: 122 GLNKIRVKTESFWGATLYHPDNLPFKIAHIPELFTNFRKKVEKASTVDPILPTPKSLSPL 181 Query: 180 PAIRLTGPVTPSNIPRFFDYPF--QAIDPMFPIGEQNALHILRKFCKEK--VYYYVEQRD 235 PAI + P + P Q F GE AL L ++ +K + Y E R+ Sbjct: 182 PAIEIG--TLPDLAALGLETPIFDQRGVLKFRGGETAALERLEEYFWQKNCLKSYKETRN 239 Query: 236 -IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHL 294 + +S+ SP+L+ G +SPR + + +++ +K S + + EL+WR+++R + Sbjct: 240 GMLGGDYSSKFSPWLASGCISPRYIYEAV-QKYEQQRVKNDS-TYWLIFELLWRDYFRFI 297 Query: 295 MA------FYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGW 348 A FYPS G +PW E +W + Q W++G TG+P++DA MR+L G+ Sbjct: 298 CAKHGNKIFYPSGLQGLD-LPWKE--DWQR----FQLWQEGKTGYPLVDANMRELAATGF 350 Query: 349 MHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRI 408 M NR R ASFL K+L ++W +G E+F S L+D D+ SN G W + A GND+ FR Sbjct: 351 MSNRGRQNVASFLTKNLGLNWIMGAEWFESLLIDYDVCSNYGNWNYTAGVGNDARG-FRY 409 Query: 409 FNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND------LSLNYPLPIVD 462 FN Q K +DP G ++RHWLPEL VP IH P + L ++YP P+VD Sbjct: 410 FNIPKQSKDYDPLGEYLRHWLPELAAVPGDKIHEPWKLSSEEQKRYQVRLGVDYPQPVVD 469 Query: 463 HKKACHHTLNQYYAAKKQSLL 483 K+ Y +K + L Sbjct: 470 FFKSIKTNEAIYSTREKGTRL 490 >gi|285816392|gb|ADC36879.1| Deoxyribodipyrimidine photolyase [Staphylococcus aureus 04-02981] Length = 457 Score = 189 bits (480), Expect = 1e-45, Method: Compositional matrix adjust. Identities = 115/340 (33%), Positives = 177/340 (52%), Gaps = 18/340 (5%) Query: 142 LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPF 201 +N + YKV+T F + L D+ + + +P ++ F D F Sbjct: 129 FKASKTMNQQGEPYKVFTSFYRKWRPYLRHRDVYHYDLKSFEDFVIASPDDLV-FDDIVF 187 Query: 202 QAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWN 261 + + EQN + F + + Y RD TSQLS L+ G+L + +N Sbjct: 188 GSS----QVIEQNKW---QHFLDQDIQNYESGRDYLPEVLTSQLSVALAYGLLDIIEIFN 240 Query: 262 RLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSH 321 L + + ++ +++ ELI+REFY LM YP + F P +I+W+++ Sbjct: 241 DLLARYDE----DEANHEAFIRELIFREFYYVLMTQYPETSY-QAFKPKYRQIKWSQNEA 295 Query: 322 LLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLL 381 AW +G TGFPIIDAA+ +L G+MHNR+RM+ + FL KDL +DW GE++F L+ Sbjct: 296 NFNAWCEGQTGFPIIDAAIMELTQTGFMHNRMRMVVSQFLTKDLFIDWTWGEKFFRKHLI 355 Query: 382 DGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIH 441 D D ASN GWQW+ASTG D+VPYFR+FNP Q +RFD + +I+ +LP N + +Y+H Sbjct: 356 DYDAASNIHGWQWSASTGTDAVPYFRMFNPIRQSERFDAKALYIKTYLPIFNQIDAKYLH 415 Query: 442 APHS-----WLDKNDLSLNYPLPIVDHKKACHHTLNQYYA 476 + +L +YP +VDH++ L + A Sbjct: 416 DTQRNESNLFEQGIELGSHYPRQMVDHQEKRTQVLATFKA 455 >gi|117927361|ref|YP_871912.1| deoxyribodipyrimidine photo-lyase type I [Acidothermus cellulolyticus 11B] gi|117647824|gb|ABK51926.1| deoxyribodipyrimidine photo-lyase type I [Acidothermus cellulolyticus 11B] Length = 497 Score = 189 bits (479), Expect = 1e-45, Method: Compositional matrix adjust. Identities = 144/487 (29%), Positives = 221/487 (45%), Gaps = 56/487 (11%) Query: 13 WLRNDLRITDNKALYAACHNSDAK-VIAVFIATPEQWRQHGISARQSHFIYASLLQVQKS 71 W R DLR+ D+ AL AA + A+ ++ +F+ P R G + Q F+ + L ++ + Sbjct: 36 WFRRDLRLADSPALVAAARAAGAEPIVPLFVVDPRAGRGAGPNRWQ--FLASCLEELDRQ 93 Query: 72 LSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL---Q 128 L + + + + + + + + RRD+++ +RL Sbjct: 94 LGGALTLRRAPGVGGAAAVAAIVAGFAAEVGAEIVVASGETTPYGRRRDRIVAERLAAED 153 Query: 129 HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188 R++ D + PG + Y+V++ F +A + V+A PA R V Sbjct: 154 RRLLL--LDTPYCVAPGRLRRTGGHPYRVFSAFYRAWLAEPVEAPYER---PAARFDALV 208 Query: 189 TPSNIPRFFDYPFQAID---------PMFPI------GEQNALHILRKFCKEKVYYYVEQ 233 + D + D P+ P GE+ A+ L +FC+ + Y Sbjct: 209 SDGEATDLVDAAGRGYDVSPSWWRDLPLGPAPHLPAAGERAAIDRLTQFCESALPQYDRH 268 Query: 234 RDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRH 293 RD P + GTS+LS L G L PR +++ + P F L EL WREF+ Sbjct: 269 RDRPDMAGTSRLSADLHFGTLHPRT----VRDAARKTVEGPALDRF--LAELAWREFFAD 322 Query: 294 LMAFYPSVCMGK--PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHN 351 ++ P P + + AW +G TG+ ++DA MRQL + GWMHN Sbjct: 323 VLWHRPDAAWHSWDPIGRHLAVDDGPQARERFTAWARGETGYGLVDAGMRQLLSEGWMHN 382 Query: 352 RLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNP 411 R+RM++ASFLVKDL +DWR G +F+ L+DGD+ASNN WQW A G D+ PY RIFNP Sbjct: 383 RVRMVSASFLVKDLHLDWRWGARWFLWHLVDGDIASNNLNWQWVAGIGTDAAPYHRIFNP 442 Query: 412 TIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTL 471 Q +RFDP G + R + +L P + L IV+HK L Sbjct: 443 DRQAERFDPDGAYRRRYCADL---PAR-------------------LSIVNHKAERAEAL 480 Query: 472 NQYYAAK 478 ++ AAK Sbjct: 481 TRWAAAK 487 >gi|15559008|gb|AAL02092.1|AF348461_1 cryptochrome 1b [Solanum lycopersicum] gi|15559010|gb|AAL02093.1|AF348462_1 Cryptochrome 1b [Solanum lycopersicum] Length = 583 Score = 189 bits (479), Expect = 1e-45, Method: Compositional matrix adjust. Identities = 150/501 (29%), Positives = 233/501 (46%), Gaps = 47/501 (9%) Query: 5 TAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYAS 64 ++ +VW R DLR+ DN AL AA VIAVFI PE+ + +I S Sbjct: 2 SSGGCSIVWFRRDLRLEDNPALAAAVRA--GSVIAVFIWAPEEEGYYCPGRVSRWWIKKS 59 Query: 65 LLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLE 124 L + SL + G + +DS+ L T++F+N Y+ + RD + Sbjct: 60 LAHLDSSLKKLGTSLITKRS---NDSVSSLLQVVKSTGATRVFFNHLYDPISLVRDNCAK 116 Query: 125 KRLQHR-VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIR 183 + L V SF+ +L P +++ + + ++ F + + + LP P Sbjct: 117 ETLSAEGVSVCSFNADLLYEPWEVVDDESRPFSTFSDFWEKCLTMPYDPEAPLLP-PKRI 175 Query: 184 LTGPVT--PSNIPRFFDYPFQAIDPMFP----IGEQNALHILRKFCKEKVYYYVEQRDIP 237 ++G + PS+ F + + + G NA L F + Y + R Sbjct: 176 ISGDASRCPSDNLVFESELEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRSKA 235 Query: 238 AIQGTSQLSPYLSIGVLSPRQCWNRLK--------------EEFVDLLIKPKSGAFSWLN 283 TS LSP L G +S R+ ++R++ EE V+L +K Sbjct: 236 DSATTSFLSPCLHFGEVSVRKVFHRIRTKQTLWANEGNKAGEESVNLFLK---------- 285 Query: 284 ELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQL 343 + REF R+ M+FY +P + + W D +AW+QG TG+P++DA MR+L Sbjct: 286 SIGLREFSRY-MSFYHPYSHERPLLGQLKYFPWLVDEGYFKAWRQGRTGYPLVDAGMREL 344 Query: 344 NTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSV 403 GW+H+R+R++ +SF VK L + W G +YF LLD DL S+ GWQ+ T D Sbjct: 345 WATGWLHDRIRVVVSSFSVKVLQLPWTWGMKYFWDTLLDADLESDALGWQFITGTLPDGC 404 Query: 404 PYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIH----APHSWLDKNDLSL--NYP 457 + I NP +G +FDP G ++R WLPEL +PT++IH AP S L + L NYP Sbjct: 405 EFLGIDNPQFEGYKFDPNGEYVRRWLPELARLPTEWIHHPWDAPESVLQAAGIELGSNYP 464 Query: 458 LPIVD---HKKACHHTLNQYY 475 PIV+ K+ L+Q + Sbjct: 465 FPIVEIVAAKERLEEALSQMW 485 >gi|229583293|ref|YP_002841692.1| Deoxyribodipyrimidine photo-lyase [Sulfolobus islandicus Y.N.15.51] gi|228014009|gb|ACP49770.1| Deoxyribodipyrimidine photo-lyase [Sulfolobus islandicus Y.N.15.51] Length = 433 Score = 189 bits (479), Expect = 1e-45, Method: Compositional matrix adjust. Identities = 147/476 (30%), Positives = 223/476 (46%), Gaps = 51/476 (10%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHG--ISARQSHFIYASLLQV 68 L R DLR+ DN L A + + KVI FI P Q S +F+ SL ++ Sbjct: 4 LFIFRRDLRLDDNTGLIKALEDCE-KVIPAFILDPRQVGNENEYKSEFAINFMINSLNEL 62 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128 L ++G + F + E + + L + V ++ N Y RD+ + K + Sbjct: 63 NDELRKRGSRLYVY----FGLAEEVIKN--LLKDVDAVYLNEDYTPFSKMRDERIRKYCE 116 Query: 129 HR-VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187 I KSF+D +L N Y+ +T F N+V+ PV Sbjct: 117 DTGKIMKSFEDYLLTSKNDFKN-----YRNFTTF-----YNVVKNKQIRKPVQ------- 159 Query: 188 VTPSNIPRFFDYPFQAIDPMFPI-GEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246 +N ++ + P GE+ K + +++D A + LS Sbjct: 160 ---NNYTNYYKNSLGDEHELPPRQGERGGRKEGIKLIERARQINYDRKDFVAEDNRTFLS 216 Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP 306 P+L G LS R+ + L + + + + +L WR+FY L+A+Y +P Sbjct: 217 PHLKFGTLSIREVYYSLLD------------SQAIIRQLYWRDFY-TLLAYYNERVFHEP 263 Query: 307 FIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLL 366 IEW + L QAW +G TG+PIIDA MRQLN G M NR+RM+TA FLVK L+ Sbjct: 264 LKREYNCIEWENNERLFQAWLEGKTGYPIIDAGMRQLNRTGDMPNRVRMLTAFFLVKVLI 323 Query: 367 VDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIR 426 +DWRIGE+YF S+L+D D + NNG WQW AS G D + FR+F+P Q +DP+ +I+ Sbjct: 324 IDWRIGEKYFASKLIDYDPSVNNGNWQWIASVGTDYI--FRVFDPWKQQVTYDPEAKYIK 381 Query: 427 HWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQSL 482 W+ EL + + IH + + K +YP PIVD + + + Y +K + Sbjct: 382 RWVDELESYDAEIIHNAYKYTLK-----SYPKPIVDWRIRVNLSKRLYEVCRKSKI 432 >gi|4325368|gb|AAD17364.1| Arabidopsis thaliana flavin-type blue-light photoreceptor (SW:Q43125) (Pfam: PF00875, Score=765.2, E=2.6e-226, N=1) Length = 702 Score = 188 bits (478), Expect = 1e-45, Method: Compositional matrix adjust. Identities = 149/487 (30%), Positives = 233/487 (47%), Gaps = 33/487 (6%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 +VW R DLR+ DN AL AA VIA+F+ PE+ + ++ SL Q+ Sbjct: 15 IVWFRRDLRVEDNPALAAAVRA--GPVIALFVWAPEEEGHYHPGRVSRWWLKNSLAQLDS 72 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130 SL G + + DS+ L +++F+N Y+ + RD + L + Sbjct: 73 SLRSLGTCLITKRST---DSVASLLDVVKSTGASQIFFNHLYDPLSLVRDHRAKDVLTAQ 129 Query: 131 VIC-KSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189 I +SF+ +L P + + + + ++ F + + + LP P ++G V+ Sbjct: 130 GIAVRSFNADLLYEPWEVTDELGRPFSMFAAFWERCLSMPYDPESPLLP-PKKIISGDVS 188 Query: 190 P--SNIPRFFDYPFQAIDPMFP----IGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS 243 ++ F D + + + G N L F + Y + R TS Sbjct: 189 KCVADPLVFEDDSEKGSNALLARAWSPGWSNGDKALTTFINGPLLEYSKNRRKADSATTS 248 Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCM 303 LSP+L G ++ N EE V+L +K + RE+ R++ +P Sbjct: 249 FLSPHLHFGEVAWANEGNEAGEESVNLFLK----------SIGLREYSRYISFNHP-YSH 297 Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363 +P + + W D + +AW+QG TG+P++DA MR+L GW+H+R+R++ +SF VK Sbjct: 298 ERPLLGHLKFFPWAVDENYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFVK 357 Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423 L + WR G +YF LLD DL S+ GWQ+ T DS + RI NP +G +FDP G Sbjct: 358 VLQLPWRWGMKYFWDTLLDADLESDALGWQYITGTLPDSREFDRIDNPQFEGYKFDPNGE 417 Query: 424 FIRHWLPELNNVPTQYIH----APHSWLDKNDLSL--NYPLPIV--DHKKA-CHHTLNQY 474 ++R WLPEL+ +PT +IH AP S L + L NYPLPIV D KA H L+Q Sbjct: 418 YVRRWLPELSRLPTDWIHHPWNAPESVLQAAGIELGSNYPLPIVGLDEAKARLHEALSQM 477 Query: 475 YAAKKQS 481 + + S Sbjct: 478 WQLEAAS 484 >gi|258423340|ref|ZP_05686231.1| conserved hypothetical protein [Staphylococcus aureus A9635] gi|257846401|gb|EEV70424.1| conserved hypothetical protein [Staphylococcus aureus A9635] Length = 457 Score = 188 bits (478), Expect = 1e-45, Method: Compositional matrix adjust. Identities = 116/340 (34%), Positives = 176/340 (51%), Gaps = 18/340 (5%) Query: 142 LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPF 201 +N + YKV+T F K L D+ + + +P ++ F D F Sbjct: 129 FKASKTMNQQGEPYKVFTSFYKKWRPYLRHRDVYHYDLKSFEDFVIASPDDLV-FDDIAF 187 Query: 202 QAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWN 261 + I EQN + F + + Y RD TSQLS L+ G+L + +N Sbjct: 188 GSS----QIIEQNKW---QHFLDQDIQNYESGRDYLPEVLTSQLSVALAYGLLDIIEIFN 240 Query: 262 RLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSH 321 L + + ++ +++ ELI+REFY LM YP + F +I+W+++ Sbjct: 241 DLLARYDE----DEANYEAFIRELIFREFYYVLMTQYPETSY-QAFKSKYRQIKWSQNEA 295 Query: 322 LLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLL 381 AW +G TGFPIIDAA+ +L G+MHNR+RM+ + FL KDL +DW GE++F L+ Sbjct: 296 DFNAWCEGQTGFPIIDAAIMELTQTGFMHNRMRMVVSQFLTKDLFIDWTWGEKFFRKHLI 355 Query: 382 DGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIH 441 D D ASN GWQW+ASTG D+VPYFR+FNP Q +RFD + +I+ +LP N + +Y+H Sbjct: 356 DYDAASNIHGWQWSASTGTDAVPYFRMFNPIRQSERFDAKALYIKTYLPIFNQIDAKYLH 415 Query: 442 APHS-----WLDKNDLSLNYPLPIVDHKKACHHTLNQYYA 476 + +L +YP +VDH++ L + A Sbjct: 416 DTQRNESNLFEQGIELGRHYPRQMVDHQEKRTQVLAAFKA 455 >gi|15899214|ref|NP_343819.1| deoxyribodipyrimidine photo-lyase [Sulfolobus solfataricus P2] gi|13815773|gb|AAK42609.1| Deoxyribodipyrimidine photolyase (DNA photolyase) (photoreactivating enzyme). (phrB) [Sulfolobus solfataricus P2] Length = 433 Score = 188 bits (478), Expect = 1e-45, Method: Compositional matrix adjust. Identities = 147/476 (30%), Positives = 222/476 (46%), Gaps = 51/476 (10%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHG--ISARQSHFIYASLLQV 68 L R DLR+ DN L A + + KVI FI P Q S +F+ SL ++ Sbjct: 4 LFIFRRDLRLDDNTGLIKALEDCE-KVIPAFILDPRQVGNENEYKSEFAINFMINSLNEL 62 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128 L ++G + F + E + + L + V ++ N Y RD+ + K + Sbjct: 63 NDELRKRGSRLYVY----FGLAEEVIKN--LLKDVDAVYLNEDYTPFSKMRDERIRKYCE 116 Query: 129 HR-VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187 I KSF+D +L N Y+ +T F N+V+ PV Sbjct: 117 DTGKIMKSFEDYLLTSKNDFKN-----YRNFTTF-----YNVVKNKQIKKPVQ------- 159 Query: 188 VTPSNIPRFFDYPFQAIDPMFPI-GEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246 +N ++ + P GE+ K + +++D A + LS Sbjct: 160 ---NNYTNYYKNSLGDEHELPPRQGERGGRKEGIKLIERARQINYDRKDFVAEDNRTFLS 216 Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP 306 P+L G LS R+ + L + + + + +L WR+FY L+A+Y +P Sbjct: 217 PHLKFGTLSIREVYYSLLD------------SQAIIRQLYWRDFY-TLLAYYNERVFHEP 263 Query: 307 FIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLL 366 IEW + L QAW +G TG+PIIDA MRQLN G M NR+RM+TA FLVK L+ Sbjct: 264 LKREYNCIEWENNERLFQAWLEGKTGYPIIDAGMRQLNRTGDMPNRVRMLTAFFLVKVLI 323 Query: 367 VDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIR 426 +DWRIGE+YF S+L+D D + NNG WQW AS G D + FR+F+P Q +DP+ +I+ Sbjct: 324 IDWRIGEKYFASKLIDYDPSVNNGNWQWIASVGTDYI--FRVFDPWKQQVTYDPEAKYIK 381 Query: 427 HWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQSL 482 W+ EL + + IH + + K +YP PIVD + + Y +K + Sbjct: 382 RWVDELESYDAEIIHNAYKYTLK-----SYPKPIVDWRIRVNLAKRLYEVCRKSKI 432 >gi|313676689|ref|YP_004054685.1| cryptochrome, dash family [Marivirga tractuosa DSM 4126] gi|312943387|gb|ADR22577.1| cryptochrome, DASH family [Marivirga tractuosa DSM 4126] Length = 475 Score = 188 bits (478), Expect = 1e-45, Method: Compositional matrix adjust. Identities = 127/446 (28%), Positives = 224/446 (50%), Gaps = 27/446 (6%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQS-----HFIYASL 65 L+W R +LR+ DN+AL NS+ K + ++I +W+++ + ++S +F++ S+ Sbjct: 9 LIWFRKNLRLKDNQALLEGVQNSE-KYLLLYIFDEREWKKNPVGLKRSSDKKLNFLWQSV 67 Query: 66 LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125 L +++++ KG + D+ + + ++ + L+ ++ E +K +E Sbjct: 68 LDLKQNIEAKGGQLVMLKG----DAEDLIQRLSIENKFDALYAPKESGTEEFELEKSVED 123 Query: 126 R-LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL 184 ++HR + + L I ++ ++T FRK +N Q +R L L Sbjct: 124 FFIKHRAKVDFYAQTTLFHEDDIPWPIGKLPDIFTQFRK---ENEKQTGVRDLFESPEDL 180 Query: 185 TGPVTPSNIPRFFDYPFQAIDPM------FPIGEQNALHILRKFC--KEKVYYYVEQRD- 235 + + + F D +I P F GE +A L + +++ Y R+ Sbjct: 181 SASIPVKEVFEFSDLAIGSISPEEKSVLNFQGGETHAWERLEYYFWDSDQLKEYKNTRNG 240 Query: 236 IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLM 295 + + +S+ SP+L++G +SP+ + ++K+ + K + + ELIWR+++ ++ Sbjct: 241 LLGERYSSKFSPWLALGCISPKSIYYQVKQ--YEKERKKNQSTYWMIFELIWRDYFHFVL 298 Query: 296 AFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRM 355 + + K I + ++W D L + WK TG P IDA MR+LN G+M NR R Sbjct: 299 KKFGAQLFQKEGIK-GKGVDWKWDLELFEKWKTAETGVPFIDANMRELNATGFMSNRGRQ 357 Query: 356 ITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQG 415 ASFLVKDL +DWR+G YF QL+D D+ASN G W + A GND R FN Q Sbjct: 358 NVASFLVKDLGLDWRMGAWYFEHQLIDYDVASNWGNWAYVAGVGNDPREN-RYFNILSQA 416 Query: 416 KRFDPQGTFIRHWLPELNNVPTQYIH 441 K++D +G ++RHW+PEL + IH Sbjct: 417 KKYDVKGDYVRHWIPELKEIEGFNIH 442 >gi|229578080|ref|YP_002836478.1| Deoxyribodipyrimidine photo-lyase [Sulfolobus islandicus Y.G.57.14] gi|228008794|gb|ACP44556.1| Deoxyribodipyrimidine photo-lyase [Sulfolobus islandicus Y.G.57.14] Length = 433 Score = 188 bits (478), Expect = 2e-45, Method: Compositional matrix adjust. Identities = 147/477 (30%), Positives = 224/477 (46%), Gaps = 53/477 (11%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHG--ISARQSHFIYASLLQV 68 L R DLR+ DN L A + + KVI FI P Q S +F+ SL ++ Sbjct: 4 LFIFRRDLRLDDNTGLIKALEDCE-KVIPAFILDPRQVGNENEYKSEFAINFMINSLNEL 62 Query: 69 QKSLSQKGI-VFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127 L ++G ++ Y + ++ I+ L + V ++ N Y RD+ + K Sbjct: 63 NDELRKRGSRLYVYFGLA--EEEIK-----NLLKDVDAVYLNEDYTPFSKMRDERIRKYC 115 Query: 128 QHR-VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 + I KSF+D +L N Y+ +T F N+V+ PV Sbjct: 116 EDTGKIMKSFEDYLLTSKNDFKN-----YRNFTTF-----YNVVKNKQIRKPVQ------ 159 Query: 187 PVTPSNIPRFFDYPFQAIDPMFPI-GEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245 +N ++ + P GE+ K + +++D A + L Sbjct: 160 ----NNYTNYYKNSLGDEHELPPRQGERGGRKEGIKLIERARQINYDRKDFVAEDNRTFL 215 Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305 SP+L G LS R+ + L + + + + +L WR+FY L+A+Y + Sbjct: 216 SPHLKFGTLSIREVYYSLLD------------SQAIIRQLYWRDFY-TLLAYYNERVFHE 262 Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365 P IEW + L QAW +G TG+PIIDA MRQLN G M NR+RM+TA FLVK L Sbjct: 263 PLKREYNCIEWENNERLFQAWLEGKTGYPIIDAGMRQLNRTGDMPNRVRMLTAFFLVKVL 322 Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425 ++DWRIGE+YF S+L+D D + NNG WQW AS G D + FR+F+P Q +DP+ +I Sbjct: 323 IIDWRIGEKYFASKLIDYDPSVNNGNWQWIASVGTDYI--FRVFDPWKQQVTYDPEAKYI 380 Query: 426 RHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQSL 482 + W+ EL + + IH + + K +YP PIVD + + Y +K + Sbjct: 381 KRWVDELESYDAEIIHNAYKYTLK-----SYPKPIVDWRIRVNLAKRLYEVCRKSKI 432 >gi|256393411|ref|YP_003114975.1| deoxyribodipyrimidine photo-lyase [Catenulispora acidiphila DSM 44928] gi|256359637|gb|ACU73134.1| Deoxyribodipyrimidine photo-lyase [Catenulispora acidiphila DSM 44928] Length = 473 Score = 188 bits (478), Expect = 2e-45, Method: Compositional matrix adjust. Identities = 138/453 (30%), Positives = 201/453 (44%), Gaps = 35/453 (7%) Query: 17 DLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQKSLSQKG 76 DLR+ DN L AA ++D +V+ +F+ + IS + F+ SL + +L G Sbjct: 31 DLRVHDNPVLAAAAASADGRVVPLFVLDGGILPR--ISETRRRFLEESLADLDAALRALG 88 Query: 77 IVFQYHQCSNFDDSIEWLDSYC-----LQQRVTKLFYNRQYEINEVRRDKLLEKRLQHRV 131 + + L VT + RQ + R E L +V Sbjct: 89 GRLVLRSGDVVAEVCRVVAEVDAVEVHLASDVTAYAHERQDALAAALRANGAELHLHDQV 148 Query: 132 ICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP-VTP 190 + PPG + + + V+TP+ + + ++A P A RLT P + Sbjct: 149 -------HTIQPPGELRPNDRDHFSVFTPYWRRWAEMPLRA-----PASAPRLTVPDIAG 196 Query: 191 SNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLS 250 +P D GE +++ + V Y + D A TS+LSPYL Sbjct: 197 LELPTSADSTLSG---GLRGGETQGRKRAKQWLGKAVEDYEDIHDDLAANATSKLSPYLH 253 Query: 251 IGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPW 310 G +S + R + P SG ++L +L WR+F+ +MA P Sbjct: 254 FGCVSATELAARASRDH------PGSGTEAFLRQLCWRDFHHQVMAARPDAA----HTDL 303 Query: 311 TEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWR 370 + W D L AW G TG PI+DA MRQL GWMHNR R+ITA FL K L +DWR Sbjct: 304 RPRGAWVDDPEALDAWTAGRTGIPIVDAGMRQLAAEGWMHNRARLITAGFLTKTLGIDWR 363 Query: 371 IGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLP 430 G +F LLD D+A+N WQW A TG D+ P R+ NP Q R+DP G ++R ++P Sbjct: 364 SGAAHFAHHLLDADVANNILNWQWVAGTGMDTRPN-RVMNPLRQATRYDPSGEYVRRYVP 422 Query: 431 ELNNVPTQY-IHAPHSWLDKNDLSLNYPLPIVD 462 EL ++ +H P L+YP PIV+ Sbjct: 423 ELADLSDAADVHQPWRLGPVALKELDYPAPIVE 455 >gi|206900389|ref|YP_002249959.1| deoxyribodipyrimidine photolyase [Dictyoglomus thermophilum H-6-12] gi|206739492|gb|ACI18550.1| deoxyribodipyrimidine photolyase [Dictyoglomus thermophilum H-6-12] Length = 433 Score = 188 bits (477), Expect = 2e-45, Method: Compositional matrix adjust. Identities = 142/453 (31%), Positives = 215/453 (47%), Gaps = 54/453 (11%) Query: 17 DLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQKSLSQKG 76 DLRI DN A AC +S +++ ++I +H + F+ ++L V L++ G Sbjct: 12 DLRIKDNTAFIKACEDS-KEIVPLYIL-----ERHNFNKYSFEFVISALGYVNFELNKLG 65 Query: 77 IVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHRVI-CKS 135 + +++ E+L + ++ ++ Y + ++KLL + + I + Sbjct: 66 SFLYLVERGFNEETFEFLRE---KIGFDAIYLSKDYLWSFEEKEKLLRNFCREKGIELRF 122 Query: 136 FDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPSNIPR 195 F+ + L+ P I KV+TPF K L ++R +L P+ + + Sbjct: 123 FEGNFLVSPNLI-----SQTKVFTPFFKKWSAYL--GEIRRKDFNFSKLNTPIL--ELSK 173 Query: 196 FFDYPFQA------IDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYL 249 F D+ F I+ F E + Y E+RD+ GTS+LS Y+ Sbjct: 174 FEDFEFSKKVRLDLIEWGFKRLESFDFDV-----------YDEKRDLLYCDGTSKLSAYI 222 Query: 250 SIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIP 309 + GV+S + ++K KS F L EL +REF+ H+ +P F Sbjct: 223 NYGVISIYDVYEKVK--------NSKSSQF--LRELAFREFWYHIRMHFPET-RNLEFQE 271 Query: 310 WTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDW 369 T IEW ++ ++ TG+PI+DA +R L T GW+HNRLRMI ASF K LL DW Sbjct: 272 KTRNIEWLYREDWIRKFENAETGYPIVDAGIRCLKTEGWLHNRLRMILASFFTKTLLHDW 331 Query: 370 RIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWL 429 RIGEE+F L+D D N WQW+AS G D P RIFNP IQ +FDP FI+ +L Sbjct: 332 RIGEEFFKDYLVDYDEVLNIQNWQWSASVGADPRP-LRIFNPMIQSSKFDPYCEFIKKYL 390 Query: 430 PELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVD 462 PEL + + IH P + L Y P+VD Sbjct: 391 PELKDEDCRKIHDPLKY------KLKYYTPMVD 417 >gi|29827753|ref|NP_822387.1| deoxyribodipyrimidine photolyase [Streptomyces avermitilis MA-4680] gi|29604854|dbj|BAC68922.1| putative deoxyribodipyrimidine photolyase [Streptomyces avermitilis MA-4680] Length = 457 Score = 188 bits (477), Expect = 2e-45, Method: Compositional matrix adjust. Identities = 133/467 (28%), Positives = 215/467 (46%), Gaps = 36/467 (7%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M+V +V +DLR+ D+ L AA + +V+ +F+ + + F+ L Sbjct: 1 MNVSVVLFTSDLRLHDHPPLRAALDGA-RQVVPLFVRDRAVDGAGFAAPNRLAFLADCLR 59 Query: 67 QVQKSLSQKG---------IVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEV 117 + L ++G +V Q + + D+ D L V+ + R+ + Sbjct: 60 DLDAGLRERGGRLVLRSGDVVDQVCKVAAEADA----DEVHLAAGVSAYAHRREQRLRSA 115 Query: 118 RRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTP-FRKALIQNLVQADLRS 176 + VI + PG++ + + V+TP FR ++L A Sbjct: 116 LEADGRRLHVHETVITA-------VAPGAVTPSSSDHFAVFTPYFRHWEREHLRDA---- 164 Query: 177 LPVP-AIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRD 235 L P +R+ V +P + + + GE+ L + + + Y ++ D Sbjct: 165 LGAPRGVRVPESVGSERLPTRTELSGLS-QGLAAGGEEEGRKRLMAWLRGGITAYEDRHD 223 Query: 236 IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLM 295 A TS LSP+L G LSP + +R + GA +++ +L WR+F+ ++ Sbjct: 224 DLAGDATSHLSPHLHFGTLSPVELVHRARR-------TGGPGAEAFVRQLAWRDFHYQVL 276 Query: 296 AFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRM 355 A P ++AW+ G TG+P+IDAAMRQL GWMHNR R+ Sbjct: 277 AARPDAATADYRGRGDRWRSEAAAREEVEAWRTGRTGYPVIDAAMRQLRHEGWMHNRGRL 336 Query: 356 ITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQG 415 +TASFL K L VDWR+G +F+ L+DGD+A+N WQW A TG D+ P R+ NP Q Sbjct: 337 LTASFLTKTLYVDWRVGARHFLELLVDGDVANNQLNWQWMAGTGTDTRPN-RVLNPVTQA 395 Query: 416 KRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVD 462 KR+DP G ++R W+PEL + +H P + + +YP PIV+ Sbjct: 396 KRYDPDGAYVRRWVPELEGLRGAAVHEPWKLKGLDRAAYDYPDPIVE 442 >gi|229583833|ref|YP_002842334.1| Deoxyribodipyrimidine photo-lyase [Sulfolobus islandicus M.16.27] gi|228018882|gb|ACP54289.1| Deoxyribodipyrimidine photo-lyase [Sulfolobus islandicus M.16.27] Length = 433 Score = 187 bits (476), Expect = 2e-45, Method: Compositional matrix adjust. Identities = 145/456 (31%), Positives = 216/456 (47%), Gaps = 51/456 (11%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHG--ISARQSHFIYASLLQV 68 L R DLR+ DN L A + + KVI FI P Q S +F+ SL ++ Sbjct: 4 LFIFRRDLRLDDNTGLIKALEDCE-KVIPAFILDPRQVGNENEYKSEFAINFMINSLNEL 62 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128 L ++G + F + E + + L + V ++ N Y RD+ + K + Sbjct: 63 NDELRKRGSRLYVY----FGLAEEVIKN--LLKDVDAVYLNEDYTPFSKMRDERIRKYCE 116 Query: 129 HR-VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187 I KSF+D +L N Y+ +T F N+V+ PV Sbjct: 117 DTGKIMKSFEDYLLTSKNDFKN-----YRNFTTF-----YNVVKNKQIRKPVQ------- 159 Query: 188 VTPSNIPRFFDYPFQAIDPMFPI-GEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246 +N ++ + P GE+ K + +++D A + LS Sbjct: 160 ---NNYTNYYKNSLGDEHELPPRQGERGGRKEGIKLIERARQINYDRKDFVAEDNRTFLS 216 Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP 306 P+L G LS R+ + L + + + + +L WR+FY L+A+Y +P Sbjct: 217 PHLKFGTLSIREVYYSLLD------------SQAIIRQLYWRDFY-TLLAYYNERVFHEP 263 Query: 307 FIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLL 366 IEW + LLQAW +G TG+PIIDA MRQLN G M NR+RM++A FLVK LL Sbjct: 264 LKREYNCIEWENNERLLQAWVEGKTGYPIIDAGMRQLNRTGDMPNRVRMLSAFFLVKVLL 323 Query: 367 VDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIR 426 +DWRIGE+YF S+L+D D + NNG WQW AS G D + FR+F+P Q +DP+ +++ Sbjct: 324 IDWRIGEKYFASKLIDYDPSVNNGNWQWIASVGTDYI--FRVFDPWKQQITYDPEAKYVK 381 Query: 427 HWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVD 462 W+ EL + + IH + + K NYP IVD Sbjct: 382 RWVDELESYDAEIIHNAYKYTLK-----NYPKSIVD 412 >gi|227826669|ref|YP_002828448.1| deoxyribodipyrimidine photo-lyase [Sulfolobus islandicus M.14.25] gi|227458464|gb|ACP37150.1| Deoxyribodipyrimidine photo-lyase [Sulfolobus islandicus M.14.25] Length = 433 Score = 187 bits (476), Expect = 3e-45, Method: Compositional matrix adjust. Identities = 145/456 (31%), Positives = 216/456 (47%), Gaps = 51/456 (11%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHG--ISARQSHFIYASLLQV 68 L R DLR+ DN L A + + KVI FI P Q S +F+ SL ++ Sbjct: 4 LFIFRRDLRLDDNTGLIKALEDCE-KVIPAFILDPRQVGNENEYKSEFAINFMINSLNEL 62 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128 L ++G + F + E + + L + V ++ N Y RD+ + K + Sbjct: 63 NDELRKRGSRLYVY----FGLAEEVIKN--LLKDVDAVYLNEDYTPFSKMRDERIRKYCE 116 Query: 129 HR-VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187 I KSF+D +L N Y+ +T F N+V+ PV Sbjct: 117 DTGKIMKSFEDYLLTSKNDFKN-----YRNFTTF-----YNVVKNKQIRKPVQ------- 159 Query: 188 VTPSNIPRFFDYPFQAIDPMFPI-GEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246 +N ++ + P GE+ K + +++D A + LS Sbjct: 160 ---NNYTNYYKNSLGDEHELPPRQGERGGRKEGIKLIERARQINYDRKDFVAEDNRTFLS 216 Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP 306 P+L G LS R+ + L + + + + +L WR+FY L+A+Y +P Sbjct: 217 PHLKFGTLSIREVYYSLLD------------SQAIIRQLYWRDFY-TLLAYYNERVFHEP 263 Query: 307 FIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLL 366 IEW + LLQAW +G TG+PIIDA MRQLN G M NR+RM++A FLVK LL Sbjct: 264 LKREYNCIEWENNERLLQAWVEGKTGYPIIDAGMRQLNRTGDMPNRVRMLSAFFLVKVLL 323 Query: 367 VDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIR 426 +DWRIGE+YF S+L+D D + NNG WQW AS G D + FR+F+P Q +DP+ +++ Sbjct: 324 IDWRIGEKYFASKLIDYDPSVNNGNWQWIASVGTDYI--FRVFDPWKQQITYDPEAKYVK 381 Query: 427 HWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVD 462 W+ EL + + IH + + K NYP IVD Sbjct: 382 RWVDELESYDAKIIHNAYKYTLK-----NYPKSIVD 412 >gi|254412957|ref|ZP_05026729.1| cryptochrome, DASH family [Microcoleus chthonoplastes PCC 7420] gi|196180121|gb|EDX75113.1| cryptochrome, DASH family [Microcoleus chthonoplastes PCC 7420] Length = 488 Score = 187 bits (475), Expect = 3e-45, Method: Compositional matrix adjust. Identities = 147/497 (29%), Positives = 251/497 (50%), Gaps = 49/497 (9%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGIS-----ARQSHFIYASL 65 L+W RNDLR+ D++ L+ A + A+VI + + A ++ F+ S+ Sbjct: 7 LLWYRNDLRLHDHEPLHQALQ-TKAQVIPCYCFDDRLFHTTSFGFPKTGAFRAKFLLESV 65 Query: 66 LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125 +++++ +G + +++ + + + +T ++++++ EV + L+ Sbjct: 66 ADLRENVRSRGSNLLVRR--GLPENV--IPTLAKELDITTVYFHQEVTSEEVAVESALKN 121 Query: 126 RLQH-RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL 184 L + ++F S L P + + L++ +++T FRK + + P P Sbjct: 122 ALSEIGITVQTFWGSTLYHPDDLPFNLLKIPELFTNFRKQVEKK--STIYPPFPTPKRLP 179 Query: 185 TGP-VTPSNIPRFFDYPFQ-------AIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDI 236 + P V +P+ D+ + A+ P F GE L L + +K V ++ Sbjct: 180 SLPSVEVGELPQLADFGLESPIFDERAVLP-FQGGETAGLARLNDYFWKKDCLKVYKQTR 238 Query: 237 PAIQGT---SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLN-ELIWREFYR 292 + G+ S+ SP+L++G LSPR + ++++ + + K+ + WL ELIWR+F+R Sbjct: 239 NGMLGSDYSSKFSPWLALGCLSPRFIYEQVQQYEQEQI---KNDSTYWLVFELIWRDFFR 295 Query: 293 HLMA------FYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTI 346 + A F PS G P IPW E +W++ W+QG TGFP+IDA MR+L Sbjct: 296 FICAKHGNRIFRPSGLQGIP-IPWKE--DWDR----FTLWQQGKTGFPLIDANMRELAAT 348 Query: 347 GWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYF 406 G+M NR R ASFL K+L ++W+IG E+F S L+D D+ SN G W + A GND+ F Sbjct: 349 GFMSNRGRQNVASFLTKNLGINWQIGAEWFESLLIDYDVCSNWGNWNYTAGVGNDARG-F 407 Query: 407 RIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND------LSLNYPLPI 460 R FN Q K +DPQG +++HWLPELN++P +H P + L ++YP P+ Sbjct: 408 RYFNIQKQSKDYDPQGYYVKHWLPELNSLPAAKVHQPWTLTSAEQKQFGVRLGVDYPNPV 467 Query: 461 VDHKKACHHTLNQYYAA 477 VD ++ Y AA Sbjct: 468 VDLMESVKANEKVYNAA 484 >gi|227829309|ref|YP_002831088.1| Deoxyribodipyrimidine photo-lyase [Sulfolobus islandicus L.S.2.15] gi|284996667|ref|YP_003418434.1| Deoxyribodipyrimidine photo-lyase [Sulfolobus islandicus L.D.8.5] gi|227455756|gb|ACP34443.1| Deoxyribodipyrimidine photo-lyase [Sulfolobus islandicus L.S.2.15] gi|284444562|gb|ADB86064.1| Deoxyribodipyrimidine photo-lyase [Sulfolobus islandicus L.D.8.5] Length = 433 Score = 187 bits (475), Expect = 3e-45, Method: Compositional matrix adjust. Identities = 147/476 (30%), Positives = 221/476 (46%), Gaps = 51/476 (10%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHG--ISARQSHFIYASLLQV 68 L R DLR+ DN L A + + KVI FI P Q S +F+ SL ++ Sbjct: 4 LFIFRRDLRLDDNTGLIKALEDCE-KVIPAFILDPRQVGNENEYKSEFAINFMINSLNEL 62 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128 L ++G + F + E + + L + V ++ N Y RD+ + K Sbjct: 63 NDELRKRGSRLYVY----FGLAEEVIKN--LLKDVDAVYLNEDYTPFSKMRDERIRKYCA 116 Query: 129 HR-VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187 I KSF+D +L N Y+ +T F N+V+ PV Sbjct: 117 DTGKIMKSFEDYLLTSKNDFKN-----YRNFTTF-----YNVVKNKQIRKPVQ------- 159 Query: 188 VTPSNIPRFFDYPFQAIDPMFPI-GEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246 +N ++ + P GE+ K + +++D A + LS Sbjct: 160 ---NNYTNYYKNSLGDEHELPPRQGERGGRKEGIKLIERARQINYDRKDFVAEDNRTFLS 216 Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP 306 P+L G LS R+ + L + + + + +L WR+FY L+A+Y +P Sbjct: 217 PHLKFGTLSIREVYYSLLD------------SQAIIRQLYWRDFY-TLLAYYNERVFHEP 263 Query: 307 FIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLL 366 IEW + L QAW +G TG+PIIDA MRQLN G M NR+RM+TA FLVK L+ Sbjct: 264 LKREYNCIEWENNERLFQAWLEGKTGYPIIDAGMRQLNRTGDMPNRVRMLTAFFLVKVLI 323 Query: 367 VDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIR 426 +DWRIGE+YF S+L+D D + NNG WQW AS G D + FR+F+P Q +DP+ +I+ Sbjct: 324 IDWRIGEKYFASKLIDYDPSVNNGNWQWIASVGTDYI--FRVFDPWKQQVTYDPEAKYIK 381 Query: 427 HWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQSL 482 W+ EL + + IH + + K +YP PIVD + + Y +K + Sbjct: 382 RWVDELESYDAEIIHNAYKYTLK-----SYPKPIVDWRIRVNLAKRLYEVCRKSKI 432 >gi|28372347|dbj|BAC56984.1| cryptochrome 2 [Oryza sativa Japonica Group] gi|48716244|dbj|BAD23780.1| cryptochrome 2 [Oryza sativa Japonica Group] gi|215686763|dbj|BAG89613.1| unnamed protein product [Oryza sativa Japonica Group] gi|222623271|gb|EEE57403.1| hypothetical protein OsJ_07585 [Oryza sativa Japonica Group] Length = 651 Score = 187 bits (474), Expect = 4e-45, Method: Compositional matrix adjust. Identities = 137/473 (28%), Positives = 228/473 (48%), Gaps = 28/473 (5%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 +VW R DLRI DN AL +A D V+ VFI P Q ++ SL + + Sbjct: 8 VVWFRRDLRIDDNPALASAAR--DGAVLPVFIWCPADEGQFYPGRCSRWWLKQSLPHLSQ 65 Query: 71 SLSQKGI-VFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYE-INEVRRDKLLEKRLQ 128 SL G + S + + +DS T+L YN Y+ ++ VR DK+ ++ Sbjct: 66 SLESLGCPLVLIRAESTLEALLRCIDSVG----ATRLVYNHLYDPVSLVRDDKIKKELSA 121 Query: 129 HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQAD-----LRSLPVPAIR 183 + +SF+ +L P I + + + + + + ++ + A + +PVP + Sbjct: 122 LGISIQSFNGDLLYEPWEIYDDSGLAFTTFNMYWEKCMELPIDASPSLAPWKLVPVPGLE 181 Query: 184 LTGPVTPSNIPRFFDYPFQAIDPMF----PIGEQNALHILRKFCKEKVYYYVEQRDIPAI 239 + ++ ++ + + G +NA +L +F + Y + Sbjct: 182 SVRSCSVDDLGLESSKDEESSNALLMRAWSPGWRNAEKMLEEFVSHGLLEYSKHGMKVEG 241 Query: 240 QGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFS----WLNELIWREFYRHLM 295 TS LSPYL G +S R+ + ++ + + + S A ++ + RE+ R+L Sbjct: 242 ATTSLLSPYLHFGEVSVRKVYQLVRMQQIKWENEGTSEAEESIHFFMRSIGLREYSRYLC 301 Query: 296 AFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRM 355 +P K + + W D ++W+QG TG+P++DA MR+L GW HNR+R+ Sbjct: 302 FNFP-FTHEKSLLGNLKHYPWKVDEERFKSWRQGMTGYPLVDAGMRELWATGWTHNRIRV 360 Query: 356 ITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQG 415 I +SF VK LL+ W G +YF LLD DL S+ GWQ+ + + D R+ NP +QG Sbjct: 361 IISSFAVKFLLIPWTWGMKYFWDVLLDADLESDILGWQYISGSLPDGHELSRLDNPEVQG 420 Query: 416 KRFDPQGTFIRHWLPELNNVPTQYIH----APHSWLDKN--DLSLNYPLPIVD 462 +++DP G ++R W+PEL +PT++IH AP L+ +L NYP PIVD Sbjct: 421 QKYDPDGVYVRTWIPELARMPTEWIHHPWDAPSCILEVAGVELGFNYPKPIVD 473 >gi|260765933|gb|ACX49997.1| cryptochrome 1 [Capsella bursa-pastoris] Length = 674 Score = 186 bits (473), Expect = 5e-45, Method: Compositional matrix adjust. Identities = 153/501 (30%), Positives = 236/501 (47%), Gaps = 47/501 (9%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 +VW R DLR+ DN AL AA VIAVF+ PE+ + ++ SL Q+ Sbjct: 18 IVWFRRDLRVEDNPALAAAVRA--GPVIAVFVWAPEEEGHYHPGRVSRWWLKNSLAQLDS 75 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130 SL G + + DS+ L +++F+N Y+ + RD + L + Sbjct: 76 SLRSLGTCLITKRST---DSVTSLLEVVKSTGASQIFFNHLYDPLSLVRDHRAKXVLTAQ 132 Query: 131 VIC-KSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189 I +SF+ +L P + + + + ++ F + + + LP P ++G V+ Sbjct: 133 GIAVRSFNADLLYEPWEVTDELGRPFSMFGAFWERCLSMPYDPESPLLP-PKKIISGDVS 191 Query: 190 P--SNIPRFFDYPFQAIDPMFP----IGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS 243 S+ F D + + + G NA L F + Y + R TS Sbjct: 192 KCVSDPLVFEDDSEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSATTS 251 Query: 244 QLSPYLSIGVLSPRQCW--------------NRLKEEFVDLLIKPKSGAFSWLNELIWRE 289 LSP+L G +S R+ + N EE V+L +K + RE Sbjct: 252 FLSPHLHFGEVSVRKVFHLVRIKQVAWANEGNEAGEESVNLFLK----------SIGLRE 301 Query: 290 FYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWM 349 + R++ +P +P + + W D + +AW+QG TG+P++DA MR+L GW+ Sbjct: 302 YSRYISFNHP-YSHERPLLGHLKFFPWAVDENYFKAWRQGRTGYPLVDAGMRELWATGWL 360 Query: 350 HNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIF 409 H+R+R++ +SF VK L + WR G +YF LLD DL S+ GWQ+ T DS + RI Sbjct: 361 HDRIRVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYITGTLPDSREFDRID 420 Query: 410 NPTIQGKRFDPQGTFIRHWLPELNNVPTQYIH----APHSWLDKNDLSL--NYPLPIV-- 461 NP +G +FDP G ++R WLPEL+ +PT +IH AP S L + L NYP PIV Sbjct: 421 NPQFEGYKFDPNGEYVRRWLPELSRLPTDWIHHPWNAPESVLQAAGIELGSNYPRPIVGL 480 Query: 462 DHKKA-CHHTLNQYYAAKKQS 481 D KA H L+Q + + S Sbjct: 481 DEAKARLHEALSQMWQLEAAS 501 >gi|5524201|gb|AAD44161.1|AF130423_1 cryptochrome 1 [Solanum lycopersicum] gi|8101442|gb|AAF72555.1|AF130424_1 cryptochrome 1 [Solanum lycopersicum] Length = 679 Score = 186 bits (473), Expect = 6e-45, Method: Compositional matrix adjust. Identities = 152/484 (31%), Positives = 226/484 (46%), Gaps = 46/484 (9%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHF-IYASLLQVQ 69 +VW R DLR+ DN AL A VIAVFI PE+ H R S + + SL + Sbjct: 8 IVWFRRDLRVEDNPALAAGVRA--GAVIAVFIYAPEE-EGHYYPGRVSRWWLKQSLAHLD 64 Query: 70 KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYE-INEVRRDKLLEKRLQ 128 SL G + + DSI L T+LF+N Y+ I+ VR + E Sbjct: 65 SSLKSLGTSLITKRST---DSISSLLEVVKSTGATQLFFNHLYDPISLVRDHRTKEILTA 121 Query: 129 HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188 + +SF+ +L P + + + + ++ F + + + LP P ++G Sbjct: 122 QGISVRSFNADLLYEPWEVNDDEGRPFTTFSAFWEKCLSMPYDPEAPLLP-PKRIISGDA 180 Query: 189 T--PSNIPRFFDYPFQAIDPMFPI----GEQNALHILRKFCKEKVYYYVEQRDIPAIQGT 242 + PS+ F D + + + G NA L F + Y + R T Sbjct: 181 SRCPSDNLVFEDESEKGSNALLARAWSPGWSNADKALTTFVNGPLLEYSQNRRKADSATT 240 Query: 243 SQLSPYLSIGVLSPRQCW--------------NRLKEEFVDLLIKPKSGAFSWLNELIWR 288 S LSP+L G +S R+ + N+ EE V+L +K + R Sbjct: 241 SFLSPHLHFGEVSVRKVFHFVRIKQVLWANEGNKAGEESVNLFLK----------SIGLR 290 Query: 289 EFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGW 348 E+ R+ M+F +P + W D +AW+QG TG+P++DA MR+L GW Sbjct: 291 EYSRY-MSFNHPYSHERPLLGHLRYFPWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGW 349 Query: 349 MHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRI 408 +H+R+R++ +SF VK L + WR G +YF LLD DL S+ GWQ+ + T D RI Sbjct: 350 LHDRIRVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTLPDGRELDRI 409 Query: 409 FNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIH----APHSWLDKNDLSL--NYPLPIVD 462 NP G + DP G ++R WLPEL +PT++IH AP S L+ + L NYPLPIV+ Sbjct: 410 DNPQFVGYKCDPHGEYVRRWLPELARLPTEWIHHPWNAPESVLEAAGIELGSNYPLPIVE 469 Query: 463 HKKA 466 A Sbjct: 470 IDSA 473 >gi|20800469|gb|AAB28725.2| flavin-type blue-light photoreceptor [Arabidopsis thaliana] Length = 556 Score = 186 bits (473), Expect = 6e-45, Method: Compositional matrix adjust. Identities = 151/501 (30%), Positives = 237/501 (47%), Gaps = 47/501 (9%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 +VW R DLR+ DN AL AA VIA+F+ PE+ + ++ SL Q+ Sbjct: 15 IVWFRRDLRVEDNPALAAAVRA--GPVIALFVWAPEEEGHYHPGRVSRWWLKNSLAQLDS 72 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130 SL G + + DS+ L +++F+N Y+ + RD + L + Sbjct: 73 SLRSLGTCLITKRST---DSVASLLDVVKSTGASQIFFNHLYDPLSLVRDHRAKDVLTAQ 129 Query: 131 VIC-KSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189 I +SF+ +L P + + + + ++ F + + + LP P ++G V+ Sbjct: 130 GIAVRSFNADLLYEPWEVTDELGRPFSMFAAFWERCLSMPYDPESPLLP-PKKIISGDVS 188 Query: 190 P--SNIPRFFDYPFQAIDPM----FPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS 243 ++ F D + + + + G N L F + Y + R TS Sbjct: 189 KCVADPLVFEDDSEKGSNALLARAWSPGWSNGDKALTTFINGPLLEYSKNRRKADSATTS 248 Query: 244 QLSPYLSIGVLSPRQCW--------------NRLKEEFVDLLIKPKSGAFSWLNELIWRE 289 LSP+L G +S R+ + N EE V+L +K + RE Sbjct: 249 FLSPHLHFGEVSVRKVFHLVRIKQVAWANEGNEAGEESVNLFLK----------SIGLRE 298 Query: 290 FYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWM 349 + R++ +P +P + + W D + +AW+QG TG+P++DA MR+L GW+ Sbjct: 299 YSRYISFNHP-YSHERPLLGHLKFFPWAVDENYFKAWRQGRTGYPLVDAGMRELWATGWL 357 Query: 350 HNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIF 409 H+R+R++ +SF VK L + WR G +YF LLD DL S+ GWQ+ T DS + RI Sbjct: 358 HDRIRVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYITGTLPDSREFDRID 417 Query: 410 NPTIQGKRFDPQGTFIRHWLPELNNVPTQYIH----APHSWLDKNDLSL--NYPLPIV-- 461 NP +G +FDP G ++R WLPEL+ +PT +IH AP S L + L NYPLPIV Sbjct: 418 NPQFEGYKFDPNGEYVRRWLPELSRLPTDWIHHPWNAPESVLQAAGIELGSNYPLPIVGL 477 Query: 462 DHKKA-CHHTLNQYYAAKKQS 481 D KA H L+Q + + S Sbjct: 478 DEAKARLHEALSQMWQLEAAS 498 >gi|52695977|pdb|1U3C|A Chain A, Crystal Structure Of The Phr Domain Of Cryptochrome 1 From Arabidopsis Thaliana gi|52695978|pdb|1U3D|A Chain A, Crystal Structure Of The Phr Domain Of Cryptochrome 1 From Arabidopsis Thaliana With Amppnp Bound Length = 509 Score = 186 bits (473), Expect = 6e-45, Method: Compositional matrix adjust. Identities = 151/501 (30%), Positives = 237/501 (47%), Gaps = 47/501 (9%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 +VW R DLR+ DN AL AA VIA+F+ PE+ + ++ SL Q+ Sbjct: 15 IVWFRRDLRVEDNPALAAAVRA--GPVIALFVWAPEEEGHYHPGRVSRWWLKNSLAQLDS 72 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130 SL G + + DS+ L +++F+N Y+ + RD + L + Sbjct: 73 SLRSLGTCLITKRST---DSVASLLDVVKSTGASQIFFNHLYDPLSLVRDHRAKDVLTAQ 129 Query: 131 VIC-KSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189 I +SF+ +L P + + + + ++ F + + + LP P ++G V+ Sbjct: 130 GIAVRSFNADLLYEPWEVTDELGRPFSMFAAFWERCLSMPYDPESPLLP-PKKIISGDVS 188 Query: 190 P--SNIPRFFDYPFQAIDPM----FPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS 243 ++ F D + + + + G N L F + Y + R TS Sbjct: 189 KCVADPLVFEDDSEKGSNALLARAWSPGWSNGDKALTTFINGPLLEYSKNRRKADSATTS 248 Query: 244 QLSPYLSIGVLSPRQCW--------------NRLKEEFVDLLIKPKSGAFSWLNELIWRE 289 LSP+L G +S R+ + N EE V+L +K + RE Sbjct: 249 FLSPHLHFGEVSVRKVFHLVRIKQVAWANEGNEAGEESVNLFLK----------SIGLRE 298 Query: 290 FYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWM 349 + R++ +P +P + + W D + +AW+QG TG+P++DA MR+L GW+ Sbjct: 299 YSRYISFNHP-YSHERPLLGHLKFFPWAVDENYFKAWRQGRTGYPLVDAGMRELWATGWL 357 Query: 350 HNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIF 409 H+R+R++ +SF VK L + WR G +YF LLD DL S+ GWQ+ T DS + RI Sbjct: 358 HDRIRVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYITGTLPDSREFDRID 417 Query: 410 NPTIQGKRFDPQGTFIRHWLPELNNVPTQYIH----APHSWLDKNDLSL--NYPLPIV-- 461 NP +G +FDP G ++R WLPEL+ +PT +IH AP S L + L NYPLPIV Sbjct: 418 NPQFEGYKFDPNGEYVRRWLPELSRLPTDWIHHPWNAPESVLQAAGIELGSNYPLPIVGL 477 Query: 462 DHKKA-CHHTLNQYYAAKKQS 481 D KA H L+Q + + S Sbjct: 478 DEAKARLHEALSQMWQLEAAS 498 >gi|297197474|ref|ZP_06914871.1| deoxyribodipyrimidine photolyase [Streptomyces sviceus ATCC 29083] gi|297146740|gb|EDY60352.2| deoxyribodipyrimidine photolyase [Streptomyces sviceus ATCC 29083] Length = 321 Score = 186 bits (472), Expect = 6e-45, Method: Compositional matrix adjust. Identities = 101/255 (39%), Positives = 147/255 (57%), Gaps = 14/255 (5%) Query: 211 GEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDL 270 GE L + + + Y +++D A TS+LSP+L G LSP + +R + Sbjct: 63 GETEGRRRLAVWLRSGLAAYEDRQDDLAGDATSRLSPHLHFGTLSPVELVHRARR----- 117 Query: 271 LIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKD---SHLLQAWK 327 GA +++ +L WR+F+R ++A P+ T+ W + ++AWK Sbjct: 118 --AGGPGAEAFVRQLAWRDFHRQVLAARPAAAGADYR---TQHDRWRSERTAGDDIEAWK 172 Query: 328 QGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLAS 387 +G TG+PI+DAAMRQL GWMHNR R++TASFL K L VDWRIG +F+ L+DGDLA+ Sbjct: 173 EGRTGYPIVDAAMRQLRHEGWMHNRGRLLTASFLTKTLYVDWRIGARHFLDLLVDGDLAN 232 Query: 388 NNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWL 447 N WQW A TG D+ P R+ NP Q KR+DP GT++R W+PEL + +H P Sbjct: 233 NQLNWQWMAGTGTDTRPN-RVLNPVAQAKRYDPDGTYVRRWVPELAALEGPAVHEPWKLR 291 Query: 448 DKNDLSLNYPLPIVD 462 + +L+YP P+V+ Sbjct: 292 GLDRAALDYPDPLVE 306 >gi|304571326|dbj|BAJ15781.1| cryptochrome1 [Cardamine alpina] Length = 681 Score = 186 bits (472), Expect = 7e-45, Method: Compositional matrix adjust. Identities = 149/501 (29%), Positives = 238/501 (47%), Gaps = 47/501 (9%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 +VW R DLR+ DN AL AA VIA+F+ PE+ + ++ SL Q+ Sbjct: 3 IVWFRRDLRVEDNPALAAAVRA--GPVIALFVWAPEEEGHYHPGRVSRWWLKNSLAQLDS 60 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130 SL G + + DS+ L +++F+N Y+ + RD + L + Sbjct: 61 SLRSLGTCLITKRST---DSVASLLDVVKSTGASQIFFNHLYDPLSLVRDHRAKDVLTAQ 117 Query: 131 VIC-KSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189 I +SF+ +L P + + + + ++ F + + + LP P ++G V+ Sbjct: 118 GIAVRSFNADLLYEPWEVTDELGRPFSMFAAFWERCLSMPYDPESPLLP-PKKIISGDVS 176 Query: 190 PS-NIPRFFDYPFQA-----IDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS 243 + P F+ + + + G NA L F + Y + R TS Sbjct: 177 KCVSDPLVFEDELEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSATTS 236 Query: 244 QLSPYLSIGVLSPRQCW--------------NRLKEEFVDLLIKPKSGAFSWLNELIWRE 289 LSP+L G +S R+ + N+ EE V+L +K + RE Sbjct: 237 FLSPHLHFGEVSVRKVFHLVRIKQVAWANEGNQAGEESVNLFLK----------SIGLRE 286 Query: 290 FYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWM 349 + R++ +P +P + + W D + +AW+QG TG+P++DA MR+L GW+ Sbjct: 287 YSRYISFNHP-YSHERPLLGHLKFFPWAVDENYFKAWRQGRTGYPLVDAGMRELWATGWL 345 Query: 350 HNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIF 409 H+R+R++ +SF VK L + WR G +YF LLD DL S+ GWQ+ T DS + RI Sbjct: 346 HDRIRVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYITGTLPDSREFDRID 405 Query: 410 NPTIQGKRFDPQGTFIRHWLPELNNVPTQYIH----APHSWLDKNDLSL--NYPLPI--V 461 NP +G +FDP G ++R WLPEL+ +PT++IH AP S L + L NYP P+ + Sbjct: 406 NPQFEGYKFDPNGEYVRRWLPELSRLPTEWIHHPWNAPESVLQAAGIELGSNYPRPVLGL 465 Query: 462 DHKKA-CHHTLNQYYAAKKQS 481 D KA H L+Q + + S Sbjct: 466 DEAKARLHEALSQMWQLEAAS 486 >gi|297813243|ref|XP_002874505.1| hypothetical protein ARALYDRAFT_327070 [Arabidopsis lyrata subsp. lyrata] gi|297320342|gb|EFH50764.1| hypothetical protein ARALYDRAFT_327070 [Arabidopsis lyrata subsp. lyrata] Length = 690 Score = 186 bits (472), Expect = 7e-45, Method: Compositional matrix adjust. Identities = 152/502 (30%), Positives = 237/502 (47%), Gaps = 47/502 (9%) Query: 10 HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69 ++VW R DLR+ DN AL AA VIA+F+ PE+ + ++ SL Q+ Sbjct: 14 NIVWFRRDLRVEDNPALAAAVRA--GPVIALFVWAPEEEGHYHPGRVSRWWLKNSLAQLD 71 Query: 70 KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH 129 SL G + + DS+ L +++F+N Y+ + RD + L Sbjct: 72 SSLRSLGTCLITKRST---DSVASLLDVVKSTGASQIFFNHLYDPLSLVRDHRAKDVLTA 128 Query: 130 RVIC-KSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188 + I +SF+ +L P + + + + ++ F + + + LP P ++G V Sbjct: 129 QGIAVRSFNADLLYEPWEVTDELGRPFSMFAAFWERCLSMPYDPESPLLP-PKKIISGDV 187 Query: 189 TP--SNIPRFFDYPFQAIDPMFP----IGEQNALHILRKFCKEKVYYYVEQRDIPAIQGT 242 + S+ F D + + + G NA L F + Y + R T Sbjct: 188 SKCVSDPLVFEDDSERGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSATT 247 Query: 243 SQLSPYLSIGVLSPRQCW--------------NRLKEEFVDLLIKPKSGAFSWLNELIWR 288 S LSP+L G +S R+ + N EE V+L +K + R Sbjct: 248 SFLSPHLHFGEVSVRKVFHLVRIKQVAWANEGNEAGEESVNLFLK----------SIGLR 297 Query: 289 EFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGW 348 E+ R++ +P +P + + W D + +AW+QG TG+P++DA MR+L GW Sbjct: 298 EYSRYISFNHP-YSHERPLLGHLKFFPWAVDENYFKAWRQGRTGYPLVDAGMRELWATGW 356 Query: 349 MHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRI 408 +H+R+R++ +SF VK L + WR G +YF LLD DL S+ GWQ+ T DS + RI Sbjct: 357 LHDRIRVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYITGTLPDSREFDRI 416 Query: 409 FNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIH----APHSWLDKNDLSL--NYPLPIV- 461 NP +G +FDP G ++R WLPEL+ +PT +IH AP S L + L NYP PIV Sbjct: 417 DNPQFEGYKFDPNGEYVRRWLPELSRLPTDWIHHPWNAPESVLQAAGIELGSNYPRPIVG 476 Query: 462 -DHKKA-CHHTLNQYYAAKKQS 481 D KA H L+Q + + S Sbjct: 477 LDEAKARLHEALSQMWQLEAAS 498 >gi|218245570|ref|YP_002370941.1| cryptochrome, DASH family [Cyanothece sp. PCC 8801] gi|218166048|gb|ACK64785.1| cryptochrome, DASH family [Cyanothece sp. PCC 8801] Length = 488 Score = 186 bits (472), Expect = 7e-45, Method: Compositional matrix adjust. Identities = 142/486 (29%), Positives = 244/486 (50%), Gaps = 49/486 (10%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGIS-----ARQSHFIYASL 65 L+W RNDLR+ D++ ++ A A++I + Q++ +S F+ S+ Sbjct: 9 LIWYRNDLRLHDHQPMFQAVKQK-AQIIPFYCFDNRQFKTTSFGFPKTGNFKSQFLLQSI 67 Query: 66 LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125 ++K+L Q G + + + I + C + + ++++++ E++ + LEK Sbjct: 68 DNLRKNLQQLGSNLVVRR--GYPEKI--IPEICKELAIDAVYFHQEVTSEEIKVETALEK 123 Query: 126 RL-QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKAL-IQNLVQADLRSLPVPAIR 183 L Q V F + L P + ++ +++T FRK + ++L+ + + P P Sbjct: 124 ALTQMGVQLNPFWGTTLYHPDDLPFTLAEIPELFTNFRKQVEKKSLINS---TFPTPKKL 180 Query: 184 LTGP-VTPSNIPRFFDYPFQAID------PMFPIGEQNALHILRKFC--KEKVYYYVEQR 234 + P + NIP + + + F GE + L ++ K ++ Y E R Sbjct: 181 PSLPNLDLGNIPTLAELGLETPEFDSRGVLEFIGGESEGIKRLNQYFWQKNRLKDYKETR 240 Query: 235 -DIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWL-NELIWREFYR 292 ++ +S+ SP+L++G LSPR + + + ++ + K+ + WL EL+WR+++R Sbjct: 241 NEMLGSDYSSKFSPWLALGCLSPRYIYEEVTKYELE---RVKNDSTYWLIFELLWRDYFR 297 Query: 293 HLMA------FYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTI 346 + A FY S G +PW E +W + Q W+ G TG+P++DA MR+L Sbjct: 298 FICAKHGNKVFYSSGLQGLN-LPWKE--DWQR----FQLWQTGNTGYPLVDANMRELAAT 350 Query: 347 GWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYF 406 G+M NR R ASFL K+L ++W +G E+F S L+D D+ SN G W + A GND+ F Sbjct: 351 GFMSNRGRQNVASFLTKNLGINWLMGAEWFESVLIDYDVCSNYGNWNYTAGVGNDARG-F 409 Query: 407 RIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKN------DLSLNYPLPI 460 R FN Q K +DP+G ++RHWLPEL +P IH P +L ++YP PI Sbjct: 410 RYFNIPKQSKDYDPKGNYLRHWLPELKTIPGDKIHEPWKLSQAEQKQYRVNLGVDYPRPI 469 Query: 461 VDHKKA 466 VD K+ Sbjct: 470 VDFFKS 475 >gi|7267534|emb|CAB78016.1| Arabidopsis thaliana flavin-type blue-light photoreceptor (SW:Q43125) (Pfam: PF00875, Score=765.2, E=2.6e-226, N=1) Length = 716 Score = 186 bits (472), Expect = 8e-45, Method: Compositional matrix adjust. Identities = 151/501 (30%), Positives = 236/501 (47%), Gaps = 47/501 (9%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 +VW R DLR+ DN AL AA VIA+F+ PE+ + ++ SL Q+ Sbjct: 15 IVWFRRDLRVEDNPALAAAVRA--GPVIALFVWAPEEEGHYHPGRVSRWWLKNSLAQLDS 72 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130 SL G + + DS+ L +++F+N Y+ + RD + L + Sbjct: 73 SLRSLGTCLITKRST---DSVASLLDVVKSTGASQIFFNHLYDPLSLVRDHRAKDVLTAQ 129 Query: 131 VIC-KSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189 I +SF+ +L P + + + + ++ F + + + LP P ++G V+ Sbjct: 130 GIAVRSFNADLLYEPWEVTDELGRPFSMFAAFWERCLSMPYDPESPLLP-PKKIISGDVS 188 Query: 190 P--SNIPRFFDYPFQAIDPMFP----IGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS 243 ++ F D + + + G N L F + Y + R TS Sbjct: 189 KCVADPLVFEDDSEKGSNALLARAWSPGWSNGDKALTTFINGPLLEYSKNRRKADSATTS 248 Query: 244 QLSPYLSIGVLSPRQCW--------------NRLKEEFVDLLIKPKSGAFSWLNELIWRE 289 LSP+L G +S R+ + N EE V+L +K + RE Sbjct: 249 FLSPHLHFGEVSVRKVFHLVRIKQVAWANEGNEAGEESVNLFLK----------SIGLRE 298 Query: 290 FYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWM 349 + R++ +P +P + + W D + +AW+QG TG+P++DA MR+L GW+ Sbjct: 299 YSRYISFNHP-YSHERPLLGHLKFFPWAVDENYFKAWRQGRTGYPLVDAGMRELWATGWL 357 Query: 350 HNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIF 409 H+R+R++ +SF VK L + WR G +YF LLD DL S+ GWQ+ T DS + RI Sbjct: 358 HDRIRVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYITGTLPDSREFDRID 417 Query: 410 NPTIQGKRFDPQGTFIRHWLPELNNVPTQYIH----APHSWLDKNDLSL--NYPLPIV-- 461 NP +G +FDP G ++R WLPEL+ +PT +IH AP S L + L NYPLPIV Sbjct: 418 NPQFEGYKFDPNGEYVRRWLPELSRLPTDWIHHPWNAPESVLQAAGIELGSNYPLPIVGL 477 Query: 462 DHKKA-CHHTLNQYYAAKKQS 481 D KA H L+Q + + S Sbjct: 478 DEAKARLHEALSQMWQLEAAS 498 >gi|18413170|ref|NP_567341.1| CRY1 (CRYPTOCHROME 1); ATP binding / blue light photoreceptor/ protein homodimerization/ protein kinase [Arabidopsis thaliana] gi|332278156|sp|Q43125|CRY1_ARATH RecName: Full=Cryptochrome-1; AltName: Full=Blue light photoreceptor; AltName: Full=Protein BLUE LIGHT UNINHIBITED 1; AltName: Full=Protein ELONGATED HYPOCOTYL 4; AltName: Full=Protein OUT OF PHASE 2; Short=OOP2 gi|21700897|gb|AAM70572.1| AT4g08920/hy4 [Arabidopsis thaliana] gi|332657296|gb|AEE82696.1| cryptochrome-1 [Arabidopsis thaliana] Length = 681 Score = 186 bits (472), Expect = 8e-45, Method: Compositional matrix adjust. Identities = 151/501 (30%), Positives = 236/501 (47%), Gaps = 47/501 (9%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 +VW R DLR+ DN AL AA VIA+F+ PE+ + ++ SL Q+ Sbjct: 15 IVWFRRDLRVEDNPALAAAVRA--GPVIALFVWAPEEEGHYHPGRVSRWWLKNSLAQLDS 72 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130 SL G + + DS+ L +++F+N Y+ + RD + L + Sbjct: 73 SLRSLGTCLITKRST---DSVASLLDVVKSTGASQIFFNHLYDPLSLVRDHRAKDVLTAQ 129 Query: 131 VIC-KSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189 I +SF+ +L P + + + + ++ F + + + LP P ++G V+ Sbjct: 130 GIAVRSFNADLLYEPWEVTDELGRPFSMFAAFWERCLSMPYDPESPLLP-PKKIISGDVS 188 Query: 190 P--SNIPRFFDYPFQAIDPMFP----IGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS 243 ++ F D + + + G N L F + Y + R TS Sbjct: 189 KCVADPLVFEDDSEKGSNALLARAWSPGWSNGDKALTTFINGPLLEYSKNRRKADSATTS 248 Query: 244 QLSPYLSIGVLSPRQCW--------------NRLKEEFVDLLIKPKSGAFSWLNELIWRE 289 LSP+L G +S R+ + N EE V+L +K + RE Sbjct: 249 FLSPHLHFGEVSVRKVFHLVRIKQVAWANEGNEAGEESVNLFLK----------SIGLRE 298 Query: 290 FYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWM 349 + R++ +P +P + + W D + +AW+QG TG+P++DA MR+L GW+ Sbjct: 299 YSRYISFNHP-YSHERPLLGHLKFFPWAVDENYFKAWRQGRTGYPLVDAGMRELWATGWL 357 Query: 350 HNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIF 409 H+R+R++ +SF VK L + WR G +YF LLD DL S+ GWQ+ T DS + RI Sbjct: 358 HDRIRVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYITGTLPDSREFDRID 417 Query: 410 NPTIQGKRFDPQGTFIRHWLPELNNVPTQYIH----APHSWLDKNDLSL--NYPLPIV-- 461 NP +G +FDP G ++R WLPEL+ +PT +IH AP S L + L NYPLPIV Sbjct: 418 NPQFEGYKFDPNGEYVRRWLPELSRLPTDWIHHPWNAPESVLQAAGIELGSNYPLPIVGL 477 Query: 462 DHKKA-CHHTLNQYYAAKKQS 481 D KA H L+Q + + S Sbjct: 478 DEAKARLHEALSQMWQLEAAS 498 >gi|260765927|gb|ACX49994.1| cryptochrome 1 [Capsella bursa-pastoris] gi|260765929|gb|ACX49995.1| cryptochrome 1 [Capsella bursa-pastoris] Length = 684 Score = 186 bits (472), Expect = 8e-45, Method: Compositional matrix adjust. Identities = 152/501 (30%), Positives = 235/501 (46%), Gaps = 47/501 (9%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 +VW R DLR+ DN AL AA VIAVF+ PE+ + ++ SL Q+ Sbjct: 18 IVWFRRDLRVEDNPALAAAVRA--GPVIAVFVWAPEEEGHYHPGRVSRWWLKNSLAQLDS 75 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130 SL G + + DS+ L +++F+N Y+ + RD + L + Sbjct: 76 SLRSLGTCLITKRST---DSVASLLXVVKSTGASQIFFNHLYDPLSLVRDHRAKDVLTAQ 132 Query: 131 VIC-KSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189 I +SF+ +L P + + + + ++ F + + + LP P ++G V+ Sbjct: 133 GIAVRSFNADLLYEPWEVTDELGRPFSMFGAFWERCLSMPYDPESPLLP-PKKIISGDVS 191 Query: 190 PS-NIPRFFDYPFQA-----IDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS 243 P F+ + + + G NA L F + Y + R TS Sbjct: 192 KCVTDPLVFEDDSEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSATTS 251 Query: 244 QLSPYLSIGVLSPRQCW--------------NRLKEEFVDLLIKPKSGAFSWLNELIWRE 289 LSP+L G +S R+ + N EE V+L +K + RE Sbjct: 252 FLSPHLHFGEVSVRKVFHLVRIKQVAWANEGNEAGEESVNLFLK----------SIGLRE 301 Query: 290 FYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWM 349 + R++ +P +P + + W D + +AW+QG TG+P++DA MR+L GW+ Sbjct: 302 YSRYISFNHP-YSHERPLLGHLKFFPWAVDENYFKAWRQGRTGYPLVDAGMRELWATGWL 360 Query: 350 HNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIF 409 H+R+R++ +SF VK L + WR G +YF LLD DL S+ GWQ+ T DS + RI Sbjct: 361 HDRIRVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYITGTLPDSREFDRID 420 Query: 410 NPTIQGKRFDPQGTFIRHWLPELNNVPTQYIH----APHSWLDKNDLSL--NYPLPIV-- 461 NP +G +FDP G ++R WLPEL+ +PT +IH AP S L + L NYP PIV Sbjct: 421 NPQFEGYKFDPNGEYVRRWLPELSRLPTDWIHHPWNAPESVLQAAGIELGSNYPRPIVGL 480 Query: 462 DHKKA-CHHTLNQYYAAKKQS 481 D KA H L+Q + + S Sbjct: 481 DEAKARLHEALSQMWQLEAAS 501 >gi|260765931|gb|ACX49996.1| cryptochrome 1 [Capsella bursa-pastoris] Length = 660 Score = 186 bits (471), Expect = 9e-45, Method: Compositional matrix adjust. Identities = 152/501 (30%), Positives = 235/501 (46%), Gaps = 47/501 (9%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 +VW R DLR+ DN AL AA VIAVF+ PE+ + ++ SL Q+ Sbjct: 18 IVWFRRDLRVEDNPALAAAVRA--GPVIAVFVWAPEEEGHYHPGRVSRWWLKNSLAQLDS 75 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130 SL G + + DS+ L +++F+N Y+ + RD + L + Sbjct: 76 SLRSLGTCLITKRST---DSVTSLLEVVKSTGASQIFFNHLYDPLSLVRDHRAKXVLTAQ 132 Query: 131 VIC-KSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189 I +SF+ +L P + + + + ++ F + + + LP P ++G V+ Sbjct: 133 GIAVRSFNADLLYEPWEVTDELGRPFSMFGAFWERCLSMPYDPESPLLP-PKKIISGDVS 191 Query: 190 PS-NIPRFFDYPFQA-----IDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS 243 P F+ + + + G NA L F + Y + R TS Sbjct: 192 KCVTDPLVFEDDSEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSATTS 251 Query: 244 QLSPYLSIGVLSPRQCW--------------NRLKEEFVDLLIKPKSGAFSWLNELIWRE 289 LSP+L G +S R+ + N EE V+L +K + RE Sbjct: 252 FLSPHLHFGEVSVRKVFHLVRIKQVAWANEGNEAGEESVNLFLK----------SIGLRE 301 Query: 290 FYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWM 349 + R++ +P +P + + W D + +AW+QG TG+P++DA MR+L GW+ Sbjct: 302 YSRYISFNHP-YSHERPLLGHLKFFPWAVDENYFKAWRQGRTGYPLVDAGMRELWATGWL 360 Query: 350 HNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIF 409 H+R+R++ +SF VK L + WR G +YF LLD DL S+ GWQ+ T DS + RI Sbjct: 361 HDRIRVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYITGTLPDSREFDRID 420 Query: 410 NPTIQGKRFDPQGTFIRHWLPELNNVPTQYIH----APHSWLDKNDLSL--NYPLPIV-- 461 NP +G +FDP G ++R WLPEL+ +PT +IH AP S L + L NYP PIV Sbjct: 421 NPQFEGYKFDPNGEYVRRWLPELSRLPTDWIHHPWNAPESVLQAAGIELGSNYPRPIVGL 480 Query: 462 DHKKA-CHHTLNQYYAAKKQS 481 D KA H L+Q + + S Sbjct: 481 DEAKARLHEALSQMWQLEAAS 501 >gi|284041014|ref|YP_003390944.1| cryptochrome, DASH family [Spirosoma linguale DSM 74] gi|283820307|gb|ADB42145.1| cryptochrome, DASH family [Spirosoma linguale DSM 74] Length = 487 Score = 186 bits (471), Expect = 9e-45, Method: Compositional matrix adjust. Identities = 142/494 (28%), Positives = 234/494 (47%), Gaps = 46/494 (9%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHG------ISARQSHF 60 M+ L W RNDLR+ DN+ A N+D +V+ VF+ P + +H +SA +++F Sbjct: 1 MNRILYWFRNDLRLHDNEGFVRALENAD-QVLPVFVFDPRWFARHSQLEFRRMSAFRANF 59 Query: 61 IYASLLQVQKSLSQKG--IVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVR 118 + S+ +++SL +G ++ + + ++ L + T ++ +++ E Sbjct: 60 LLESVADLRQSLRSRGADLIVRVGKPADV------LAELAGEIGATAVYASKEVTHEETT 113 Query: 119 RDKLLEKRLQH-RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSL 177 ++ L +L+ + + F S L + Q+ V++ FR+ L + + +L Sbjct: 114 QETKLSTKLKPLNIDIELFWMSTLYHVRDLPFTISQLPDVFSKFRQQLEKKAIIRPAFTL 173 Query: 178 PVPAIRLTGPVTPSNIPRFFDYPFQAIDPM------------FPIGEQNALHILRKFC-- 223 P I L + P IP F D F GE AL L ++ Sbjct: 174 PT-RIELVPNIDPGAIPTLSTLGFNDTDIRLILQPDARGAVPFSGGETVALARLDRYLWQ 232 Query: 224 KEKVYYYVEQRD-IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWL 282 + + Y E R+ + +S+ S +L+ G LSPR+ + + + + ++ + WL Sbjct: 233 TDLIATYKETRNGLLGEDYSSKFSAWLATGCLSPRKIYEEVTRYETE---RVRNESTYWL 289 Query: 283 -NELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMR 341 EL+WR+F+R + + + + I + +D L Q W +G+TG P IDA MR Sbjct: 290 IFELLWRDFFRFVALKFGTRIFKRSGIKHDLHKTYGRDEDLFQKWAEGHTGIPFIDANMR 349 Query: 342 QLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGND 401 ++N G+M NR R ASFLV DL +DW G YF S+L+D D SN G W + A GND Sbjct: 350 EMNATGFMSNRGRQNVASFLVSDLGLDWTWGAAYFESKLIDYDPCSNWGNWNYVAGVGND 409 Query: 402 SVPYF----RIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND------ 451 + R FN Q R+D QG +++HWLPEL VP + +H S + Sbjct: 410 PRQFSNGQPRYFNILSQALRYDEQGDYVKHWLPELAKVPNEQVHLAWSLSSEQQETYGVV 469 Query: 452 LSLNYPLPIVDHKK 465 L +YPLP+VD K Sbjct: 470 LGQDYPLPVVDPNK 483 >gi|442529|gb|AAB28724.1| flavin-type blue-light photoreceptor [Arabidopsis thaliana] Length = 681 Score = 186 bits (471), Expect = 9e-45, Method: Compositional matrix adjust. Identities = 151/501 (30%), Positives = 236/501 (47%), Gaps = 47/501 (9%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 +VW R DLR+ DN AL AA VIA+F+ PE+ + ++ SL Q+ Sbjct: 15 IVWFRRDLRVEDNPALAAAVRA--GPVIALFVWAPEEEGHYHPGRVSRWWLKNSLAQLDS 72 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130 SL G + + DS+ L +++F+N Y+ + RD + L + Sbjct: 73 SLRSLGTCLITKRST---DSVASLLDVVKSTGASQIFFNHLYDPLSLVRDHRAKDVLTAQ 129 Query: 131 VIC-KSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189 I +SF+ +L P + + + + ++ F + + + LP P ++G V+ Sbjct: 130 GIAVRSFNADLLYEPWEVTDELGRPFSMFAAFWERCLSMPYDPESPLLP-PKKIISGDVS 188 Query: 190 P--SNIPRFFDYPFQAIDPMFP----IGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS 243 ++ F D + + + G N L F + Y + R TS Sbjct: 189 KCVADPLVFEDDSEKGSNALLARAWSPGWSNGDKALTTFINGPLLEYSKNRRKADSATTS 248 Query: 244 QLSPYLSIGVLSPRQCW--------------NRLKEEFVDLLIKPKSGAFSWLNELIWRE 289 LSP+L G +S R+ + N EE V+L +K + RE Sbjct: 249 FLSPHLHFGEVSVRKVFHLVRIKQVAWANEGNEAGEESVNLFLK----------SIGLRE 298 Query: 290 FYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWM 349 + R++ +P +P + + W D + +AW+QG TG+P++DA MR+L GW+ Sbjct: 299 YSRYISFNHP-YSHERPLLGHLKFFPWAVDENYFKAWRQGRTGYPLVDAGMRELWATGWL 357 Query: 350 HNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIF 409 H+R+R++ +SF VK L + WR G +YF LLD DL S+ GWQ+ T DS + RI Sbjct: 358 HDRIRVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYITGTLPDSREFDRID 417 Query: 410 NPTIQGKRFDPQGTFIRHWLPELNNVPTQYIH----APHSWLDKNDLSL--NYPLPIV-- 461 NP +G +FDP G ++R WLPEL+ +PT +IH AP S L + L NYPLPIV Sbjct: 418 NPQFEGYKFDPNGEYVRRWLPELSRLPTDWIHHPWNAPESVLQAAGIELGSNYPLPIVGL 477 Query: 462 DHKKA-CHHTLNQYYAAKKQS 481 D KA H L+Q + + S Sbjct: 478 DEAKARLHEALSQMWQLEAAS 498 >gi|262051762|ref|ZP_06023980.1| hypothetical protein SA930_1845 [Staphylococcus aureus 930918-3] gi|259160373|gb|EEW45399.1| hypothetical protein SA930_1845 [Staphylococcus aureus 930918-3] Length = 457 Score = 186 bits (471), Expect = 1e-44, Method: Compositional matrix adjust. Identities = 115/340 (33%), Positives = 175/340 (51%), Gaps = 18/340 (5%) Query: 142 LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPF 201 +N + Y V+T F K L D+ + + +P ++ F D F Sbjct: 129 FKASKTMNQQGEPYNVFTSFYKKWRPYLRHRDVYHYDLKSFEDFVIASPDDLV-FDDIAF 187 Query: 202 QAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWN 261 + I EQN + F + + Y RD TSQLS L+ G+L + +N Sbjct: 188 GSS----QIIEQNKW---QHFLDQDIQNYESGRDYLPEVLTSQLSVALAYGLLDIIEIFN 240 Query: 262 RLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSH 321 L + + ++ +++ ELI+REFY LM YP + F P +I+W+++ Sbjct: 241 DLLARYDE----DEANYEAFIRELIFREFYYVLMTQYPETSY-QAFKPKYRQIKWSQNEA 295 Query: 322 LLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLL 381 AW +G TGFPIIDAA+ +L G+MHNR+RM+ + FL KDL +DW GE++F L+ Sbjct: 296 DFNAWCEGQTGFPIIDAAIMELTQTGFMHNRMRMVVSQFLTKDLFIDWTWGEKFFRKHLI 355 Query: 382 DGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIH 441 D D ASN GWQW+ASTG D+V YFR+FNP Q +RFD + +I+ +LP N + +Y+H Sbjct: 356 DYDAASNIHGWQWSASTGTDAVLYFRMFNPIRQSERFDAKALYIKTYLPIFNQIDAKYLH 415 Query: 442 APHS-----WLDKNDLSLNYPLPIVDHKKACHHTLNQYYA 476 + +L +YP +VDH++ L + A Sbjct: 416 DTQRNESNLFEQGIELGSHYPRQMVDHQEKRTQVLATFKA 455 >gi|23954324|emb|CAC82538.1| Cryptochrome 2 [Oryza sativa Indica Group] Length = 651 Score = 186 bits (471), Expect = 1e-44, Method: Compositional matrix adjust. Identities = 137/473 (28%), Positives = 227/473 (47%), Gaps = 28/473 (5%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 +VW R DLRI DN AL AA D V+ VFI P Q ++ SL + + Sbjct: 8 VVWFRRDLRIDDNPALAAAAR--DGVVLPVFIWCPADEGQFYPGRCSRWWLKQSLPHLSQ 65 Query: 71 SLSQKGI-VFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYE-INEVRRDKLLEKRLQ 128 SL G + S + + +DS T+L YN Y+ ++ VR DK+ ++ Sbjct: 66 SLESLGCPLVLIRAESTLEALLRCIDSVG----ATRLVYNHLYDPVSLVRDDKIKKELSA 121 Query: 129 HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQ-----ADLRSLPVPAIR 183 + +SF+ +L P I + + + + + + ++ + A + +P P + Sbjct: 122 LGISIQSFNGDLLYEPWEIYDDSGLAFTTFNMYWEKCMELPIDISPSLAPWKLVPAPGLE 181 Query: 184 LTGPVTPSNIPRFFDYPFQAIDPMF----PIGEQNALHILRKFCKEKVYYYVEQRDIPAI 239 + ++ ++ + + G +NA +L +F + Y + Sbjct: 182 SVRSCSVDDLGLESSKDEESSNALLRRAWSPGWRNAEKMLEEFVSHGLLEYSKHGMKVEG 241 Query: 240 QGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFS----WLNELIWREFYRHLM 295 TS LSPYL G +S R+ + ++ + + + S A ++ + RE+ R+L Sbjct: 242 ATTSLLSPYLHFGEVSVRKVYQLVRMQQIKWENEGTSEAEESIHFFMRSIGLREYSRYLC 301 Query: 296 AFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRM 355 +P K + + W D ++W+QG TG+P++DA MR+L GW HNR+R+ Sbjct: 302 FNFP-FTHEKSLLGNLKHYPWKVDEERFKSWRQGMTGYPLVDAGMRELWATGWTHNRIRV 360 Query: 356 ITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQG 415 I +SF VK LL+ W G +YF LLD DL S+ GWQ+ + + D R+ NP +QG Sbjct: 361 IISSFAVKFLLIPWTWGMKYFWDVLLDADLESDILGWQYISGSLPDGHELSRLDNPEVQG 420 Query: 416 KRFDPQGTFIRHWLPELNNVPTQYIH----APHSWLDKN--DLSLNYPLPIVD 462 +++DP G ++R W+PEL +PT++IH AP L+ +L NYP PIVD Sbjct: 421 QKYDPDGVYVRTWIPELARMPTEWIHHPWDAPSCILEVAGVELGFNYPKPIVD 473 >gi|67925725|ref|ZP_00519034.1| Deoxyribodipyrimidine photolyase [Crocosphaera watsonii WH 8501] gi|67852431|gb|EAM47881.1| Deoxyribodipyrimidine photolyase [Crocosphaera watsonii WH 8501] Length = 486 Score = 186 bits (471), Expect = 1e-44, Method: Compositional matrix adjust. Identities = 149/503 (29%), Positives = 237/503 (47%), Gaps = 57/503 (11%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQS-----HFIYASL 65 L+W RNDLRI D++ LY A A +I + Q++ ++ F+ S+ Sbjct: 7 LIWYRNDLRIHDHEPLYQAIKQG-ALIIPFYCFDIRQFKTTSFGFPKTGNFRGQFLLESV 65 Query: 66 LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125 ++KSL G Q + + I + Q + ++++ + E + +EK Sbjct: 66 TDLKKSLQDLGSNLIIRQ--GYPEKI--IPELIKQLEIDAVYFHEEVTSEETDIENTVEK 121 Query: 126 RLQH-RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQN-------LVQADLRSL 177 L+ V K F + L + ++ +V+T FRK + +N + LRSL Sbjct: 122 ALKPLNVTFKGFWGATLYHWDDLPFEVSKLPEVFTSFRKKVEKNSTVNPILISPRKLRSL 181 Query: 178 PVPAIRLTGPVTPSNIPRFFDYPFQA--IDPM----FPIGEQNALHILRKFCKEK--VYY 229 P + N+P + + D F GE + L + E+ + Sbjct: 182 P--------DIEVGNVPSLEELELEKPKYDSRGVLEFKGGETEGIQRLNNYFWERNCLKE 233 Query: 230 YVEQRD-IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWR 288 Y E R+ + +S+ SP+L+ G LSPR + + +++ + IK S + + EL+WR Sbjct: 234 YKETRNGMLGADYSSKFSPWLANGCLSPRYIYEEV-QKYEEKRIKNNS-TYWLIFELLWR 291 Query: 289 EFYRHLMA------FYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQ 342 +++R + A FY S G IPW E D + W++G TG+P++D MR+ Sbjct: 292 DYFRFISAKHGNKIFYQSGLQGVD-IPWKE------DQERFKLWQEGNTGYPLVDGNMRE 344 Query: 343 LNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDS 402 L G+M NR R ASFL K+L ++W +G E+F S L+D D+ SN G W + A GND+ Sbjct: 345 LAATGFMSNRGRQNVASFLTKNLGINWIMGAEWFESLLIDYDVCSNYGNWNYTAGVGNDA 404 Query: 403 VPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND------LSLNY 456 FR FN Q K +DP+G +I+HWLPEL +P Q IH P + + +NY Sbjct: 405 RG-FRYFNIPKQSKDYDPKGEYIKHWLPELKMIPGQKIHEPWKLSQEEQKRYNVRIGVNY 463 Query: 457 PLPIVDHKKACHHTLNQYYAAKK 479 P P+VD K+ Y AA K Sbjct: 464 PRPVVDFFKSVKANEKMYNAAIK 486 >gi|40644276|emb|CAD35495.1| cryptochrome 2 [Oryza sativa Indica Group] Length = 651 Score = 186 bits (471), Expect = 1e-44, Method: Compositional matrix adjust. Identities = 137/473 (28%), Positives = 227/473 (47%), Gaps = 28/473 (5%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 +VW R DLRI DN AL AA D V+ VFI P Q ++ SL + + Sbjct: 8 VVWFRRDLRIDDNPALAAAAR--DGVVLPVFIWCPADEGQFYPGRCSRWWLKQSLPHLSQ 65 Query: 71 SLSQKGI-VFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYE-INEVRRDKLLEKRLQ 128 SL G + S + + +DS T+L YN Y+ ++ VR DK+ ++ Sbjct: 66 SLESLGCPLVLIRAESTLEALLRCIDSVG----ATRLVYNHLYDPVSLVRDDKIKKELSA 121 Query: 129 HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQ-----ADLRSLPVPAIR 183 + +SF+ +L P I + + + + + + ++ + A + +P P + Sbjct: 122 LGISIQSFNGDLLYEPWEIYDDSGLAFTTFNMYWEKCMELPIDISPSLAPWKLVPAPGLE 181 Query: 184 LTGPVTPSNIPRFFDYPFQAIDPMF----PIGEQNALHILRKFCKEKVYYYVEQRDIPAI 239 + ++ ++ + + G +NA +L +F + Y + Sbjct: 182 SVRSCSVDDLGLESSKDEESSNALLRRAWSPGWRNAEKMLEEFVSHGLLEYSKHGMKVEG 241 Query: 240 QGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFS----WLNELIWREFYRHLM 295 TS LSPYL G +S R+ + ++ + + + S A ++ + RE+ R+L Sbjct: 242 ATTSLLSPYLHFGEVSVRKVYQLVRMQQIKWENEGTSEAEESIHFFMRSIGLREYSRYLC 301 Query: 296 AFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRM 355 +P K + + W D ++W+QG TG+P++DA MR+L GW HNR+R+ Sbjct: 302 FNFP-FTREKSLLGNLKHYPWKVDEERFKSWRQGMTGYPLVDAGMRELWATGWTHNRIRV 360 Query: 356 ITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQG 415 I +SF VK LL+ W G +YF LLD DL S+ GWQ+ + + D R+ NP +QG Sbjct: 361 IISSFAVKFLLIPWTWGMKYFWDVLLDADLESDILGWQYISGSLPDGHELSRLDNPEVQG 420 Query: 416 KRFDPQGTFIRHWLPELNNVPTQYIH----APHSWLDKN--DLSLNYPLPIVD 462 +++DP G ++R W+PEL +PT++IH AP L+ +L NYP PIVD Sbjct: 421 QKYDPDGVYVRTWIPELARMPTEWIHHPWDAPSCILEVAGVELGFNYPKPIVD 473 >gi|738308|prf||1924377A blue light photoreceptor Length = 681 Score = 185 bits (470), Expect = 1e-44, Method: Compositional matrix adjust. Identities = 151/501 (30%), Positives = 236/501 (47%), Gaps = 47/501 (9%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 +VW R DLR+ DN AL AA VIA+F+ PE+ + ++ SL Q+ Sbjct: 15 IVWFRRDLRVEDNPALAAAVRA--GPVIALFVWAPEEEGHYHPGRVSRWWLKNSLAQLDS 72 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130 SL G + + DS+ L +++F+N Y+ + RD + L + Sbjct: 73 SLRSLGTCLITKRST---DSVASLLDVVKSTGASQIFFNHLYDPLSLVRDHRAKDVLTAQ 129 Query: 131 VIC-KSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189 I +SF+ +L P + + + + ++ F + + + LP P ++G V+ Sbjct: 130 GIAVRSFNADLLYQPWEVTDELGRPFSMFAAFWERCLSMPYDPESPLLP-PKKIISGDVS 188 Query: 190 P--SNIPRFFDYPFQAIDPMFP----IGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS 243 ++ F D + + + G N L F + Y + R TS Sbjct: 189 KCVADPLVFEDDSEKGSNALLARAWSPGWSNGDKALTTFINGPLLEYSKNRRKADSATTS 248 Query: 244 QLSPYLSIGVLSPRQCW--------------NRLKEEFVDLLIKPKSGAFSWLNELIWRE 289 LSP+L G +S R+ + N EE V+L +K + RE Sbjct: 249 FLSPHLHFGEVSVRKVFHLVRIKQVAWANEGNEAGEESVNLFLK----------SIGLRE 298 Query: 290 FYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWM 349 + R++ +P +P + + W D + +AW+QG TG+P++DA MR+L GW+ Sbjct: 299 YSRYISFNHP-YSHERPLLGHLKFFPWAVDENYFKAWRQGRTGYPLVDAGMRELWATGWL 357 Query: 350 HNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIF 409 H+R+R++ +SF VK L + WR G +YF LLD DL S+ GWQ+ T DS + RI Sbjct: 358 HDRIRVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYITGTLPDSREFDRID 417 Query: 410 NPTIQGKRFDPQGTFIRHWLPELNNVPTQYIH----APHSWLDKNDLSL--NYPLPIV-- 461 NP +G +FDP G ++R WLPEL+ +PT +IH AP S L + L NYPLPIV Sbjct: 418 NPQFEGYKFDPNGEYVRRWLPELSRLPTDWIHHPWNAPESVLQAAGIELGSNYPLPIVGL 477 Query: 462 DHKKA-CHHTLNQYYAAKKQS 481 D KA H L+Q + + S Sbjct: 478 DEAKARLHEALSQMWQLEAAS 498 >gi|148909202|gb|ABR17701.1| unknown [Picea sitchensis] Length = 655 Score = 185 bits (470), Expect = 1e-44, Method: Compositional matrix adjust. Identities = 152/491 (30%), Positives = 233/491 (47%), Gaps = 50/491 (10%) Query: 6 AMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASL 65 + + +VW R DLR+ DN AL A VI ++I +PE+ Q+ ++ SL Sbjct: 2 STNCSIVWFRRDLRVEDNPALAAGVRA--GAVIVLYIWSPEEEGQYYPGRVSRWWLKQSL 59 Query: 66 LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125 + SL G + +N SI + T+LFYN Y+ + RD L++ Sbjct: 60 AHLDSSLRNLGARLITKRSTN---SISAILQVVQATGATQLFYNHLYDPLSLVRDHKLKQ 116 Query: 126 RLQHR-VICKSFDDSVLLPPGSILN---HALQMYKVYTPFRKALIQNLVQADLRSLPVPA 181 L R ++ +SF+ +L P + + HA ++ Y + K L N+ L L P Sbjct: 117 DLSSRGILVRSFNSDLLYEPWEVNDEEGHAFSTFQDY--WNKCL--NMPYDPLAPLLPPK 172 Query: 182 IRLTGPVT--PSNIPRFFDYPFQAIDPMFPI----GEQNALHILRKFCKEKVYYYVEQRD 235 + G V+ PS+ D +A + + G +A L F + Y R Sbjct: 173 RIVAGEVSNCPSDDLNLEDESEKASNALLARAWSPGWSSADKALTAFINGPLLDYAINRQ 232 Query: 236 IPAIQGTSQLSPYLSIGVLSPRQCWNRLK--------------EEFVDLLIKPKSGAFSW 281 TS LSP+L G LS ++ ++ L+ E+ V+L +K Sbjct: 233 KADSATTSLLSPHLHFGELSVKKVFHLLRIRQVLWANEGNTSGEQSVNLFLK-------- 284 Query: 282 LNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMR 341 + RE+ R+L +PS KP + W DS ++W+QG TG+P++DA MR Sbjct: 285 --SIGLREYSRYLSFNFPS-SHEKPLLSHLNYFPWRVDSDYFKSWRQGRTGYPLVDAGMR 341 Query: 342 QLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGND 401 +L GW+H+R+R++ +SF VK L + WR G +YF LLD DL + GWQ+ + D Sbjct: 342 ELWATGWLHDRIRVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLECDALGWQYISGCLPD 401 Query: 402 SVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIH----APHSWLDKNDLSL--N 455 RI NP +G +FDP G ++R WLPEL +PT++IH AP + L + L N Sbjct: 402 GREMDRIDNPQFEGYKFDPAGEYVRRWLPELARLPTEWIHHPWDAPRAVLQAAGVELGSN 461 Query: 456 YPLPIVDHKKA 466 YPLPIV+ A Sbjct: 462 YPLPIVEISTA 472 >gi|78217441|gb|ABB36796.1| cryptochrome 1 [Nicotiana sylvestris] Length = 681 Score = 185 bits (470), Expect = 1e-44, Method: Compositional matrix adjust. Identities = 151/490 (30%), Positives = 227/490 (46%), Gaps = 46/490 (9%) Query: 5 TAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHF-IYA 63 + +VW R DLR+ DN AL A VIAVFI PE+ H R S + + Sbjct: 2 SGSGCSIVWFRRDLRVEDNPALAAGVRA--GAVIAVFIWAPEE-EGHYYPGRVSRWWLKQ 58 Query: 64 SLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYE-INEVRRDKL 122 SL + SL G + + DSI L T+LF+N Y+ I+ VR + Sbjct: 59 SLAHLDSSLKSLGTSLVTKRST---DSISSLLEIVKSTGATQLFFNHLYDPISLVRDHRA 115 Query: 123 LEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAI 182 E + +SF+ +L P + + + + ++ F + + + LP P Sbjct: 116 KEVLTAQGISVRSFNADLLYEPWEVNDEEGRPFTTFSAFWEKCLSMPYDPEAPLLP-PKR 174 Query: 183 RLTGPVT--PSNIPRFFDYPFQAIDPMFP----IGEQNALHILRKFCKEKVYYYVEQRDI 236 + G + S+ F D + + + G NA L F + Y + R Sbjct: 175 IIPGDASRCSSDSLVFEDESEKGSNALLARAWSPGWSNADKALTTFVNGPLLEYSQNRRK 234 Query: 237 PAIQGTSQLSPYLSIGVLSPRQCW--------------NRLKEEFVDLLIKPKSGAFSWL 282 TS LSP+L G +S R+ + N+ EE V+L +K Sbjct: 235 ADSATTSFLSPHLHFGEVSVRKVFHFVRIKQVLWANEGNKAGEESVNLFLK--------- 285 Query: 283 NELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQ 342 + RE+ R+ M+F +P + W D +AW+QG TG+P++DA MR+ Sbjct: 286 -SIGLREYSRY-MSFNHPYSHERPLLGHLRYFPWVVDEGYFKAWRQGRTGYPLVDAGMRE 343 Query: 343 LNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDS 402 L GW+H+R+R++ +SF VK L + WR G +YF LLD DL S+ GWQ+ + T D Sbjct: 344 LWATGWLHDRIRVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTLPDG 403 Query: 403 VPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIH----APHSWLDKNDLSL--NY 456 + RI NP G + DP G ++R WLPEL+ +PT++IH AP S L+ + L NY Sbjct: 404 REFDRIDNPQFVGYKCDPHGEYVRRWLPELSRLPTEWIHHPWNAPESVLEAAGIELGSNY 463 Query: 457 PLPIVDHKKA 466 PLPIV+ A Sbjct: 464 PLPIVEIDSA 473 >gi|86608285|ref|YP_477047.1| deoxyribodipyrimidine photolyase [Synechococcus sp. JA-2-3B'a(2-13)] gi|86556827|gb|ABD01784.1| deoxyribodipyrimidine photolyase [Synechococcus sp. JA-2-3B'a(2-13)] Length = 486 Score = 185 bits (470), Expect = 1e-44, Method: Compositional matrix adjust. Identities = 147/509 (28%), Positives = 240/509 (47%), Gaps = 72/509 (14%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISAR------QSHFIYAS 64 L+W R DLR+ D++ L AC + +I ++ P Q+ + + R + F+ S Sbjct: 4 LLWFRTDLRLLDHQPLTRACQQG-SPLIPLYCLDPRQFGETSLGLRPRTSPFRGQFLLES 62 Query: 65 LLQVQKSLSQKG--IVFQYHQCSNFDDSI--EWLDSYCLQQRVTKLFYNRQYEINEVRRD 120 L +++ L +G +V + Q ++ EW V ++ + + E Sbjct: 63 LADLRQQLRSRGSDLVIRQGQPEQVIPTLAQEW--------GVEAVYAHEEVGTEEKEVA 114 Query: 121 KLLEKRLQHRVICKSFD-DSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQAD------ 173 +E+ L+ I D L P + Q+ +++T FRK + + D Sbjct: 115 AAVERALRSLGIRLQVDWGHTLYHPEDLPFCLSQLPELFTRFRKQVEGSTPIRDPLPIPS 174 Query: 174 -------LRSLPVPAIRLTGPVTPSNIPRF-FDYPFQAIDPMFPIGEQNALHILRK---F 222 L P+P + G +P+ PR F Y G A H + + Sbjct: 175 IPPLPSGLDPGPLPTLASLGLSSPARDPRARFTY----------TGGSTAAHARLQTYFW 224 Query: 223 CKEKVYYYVEQRD-IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSW 281 +++ Y E R+ + +S+LS +L++G +SPR + +K + + ++ + W Sbjct: 225 DLDRLRIYKETRNGMLDPDDSSRLSAWLALGCISPRTVYAEVKRYEQE---RVRNESTYW 281 Query: 282 LN-ELIWREFYRHLMA------FYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFP 334 L EL+WR+++R ++A F PS G P I W +D QAW +G TG+P Sbjct: 282 LVFELLWRDYFRFILAKHGAKLFRPSGIQGIP-------IPWQQDWPRFQAWCRGETGYP 334 Query: 335 IIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQW 394 ++DA MR+L G+M NR R ASFL K+L +DWR+G E+F S L+D D+ASN G W + Sbjct: 335 LVDANMRELAATGFMSNRGRQNVASFLTKNLGIDWRMGAEWFESLLIDYDVASNYGNWNY 394 Query: 395 AASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND--- 451 A GND+ FR F+ Q + +DP+G ++RHWLPEL +P IH P+ Sbjct: 395 TAGVGNDARG-FRYFHIPKQSREYDPKGDYLRHWLPELAGIPGDKIHEPYRLTAAEQKQF 453 Query: 452 ---LSLNYPLPIVDHKKACHHTLNQYYAA 477 L ++YP P+VD +K+ Y AA Sbjct: 454 GVRLGVDYPRPLVDLEKSLAANRRVYEAA 482 >gi|290962800|ref|YP_003493982.1| deoxyribodipyrimidine photolyase [Streptomyces scabiei 87.22] gi|260652326|emb|CBG75459.1| putative deoxyribodipyrimidine photolyase [Streptomyces scabiei 87.22] Length = 453 Score = 185 bits (469), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 138/468 (29%), Positives = 221/468 (47%), Gaps = 41/468 (8%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M+V +V DLR+ D+ L AA S +V+ +F+ + + + F+ L Sbjct: 1 MNVSVVLFTCDLRLHDHPPLRAALDGS-RQVVPLFVRDRDVTGAGFAAPNRLAFLADCLR 59 Query: 67 QVQKSLSQKG---------IVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEV 117 + L ++G +V + + + D+ D L V+ Y ++ E Sbjct: 60 DLDTGLRERGGRLVVRSGDVVEEVCKVAAEADA----DEVHLAADVSA--YAQRREERLR 113 Query: 118 RRDKLLEKRLQ-HRVICKSFDDSVLLPPGSILNHALQMYKVYTP-FRKALIQNLVQADLR 175 R + RL H + + D PG++L + + V+TP F Q L +A Sbjct: 114 RALEAEGVRLHVHATVTSAVD------PGAVLPASTDHFAVFTPYFGHWSRQRLREA--- 164 Query: 176 SLPVPAIRLTGPVTPSNIPRFFDYPFQAIDP-MFPIGEQNALHILRKFCKEKVYYYVEQR 234 S A+ + V +P + P + GE + + + Y ++ Sbjct: 165 SAAPRAVHVPDGVGSEELPSRAG--LSGVSPGLASGGEIEGRSRFSAWLRSGIEAYEDRH 222 Query: 235 DIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHL 294 D A TS+LSP+L G LSP + +R + GA +++ +L WR+F R + Sbjct: 223 DDLAGDATSRLSPHLHFGTLSPVELVHRSRR-------AGGPGAEAFVRQLAWRDFNRQV 275 Query: 295 MAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLR 354 +A P+ + W +AW+ G TG+P++DAAMRQL GWMHNR R Sbjct: 276 LAARPAAAKADYR---AKHDRWRTVPDEAEAWRAGRTGYPVVDAAMRQLRHEGWMHNRGR 332 Query: 355 MITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQ 414 ++TASFL K L +DWR+G +F+ L+DGD+A+N WQW A TG D+ P RI NP Q Sbjct: 333 LLTASFLAKTLYIDWRVGARHFLDLLVDGDVANNQLNWQWMAGTGTDTRPN-RILNPVTQ 391 Query: 415 GKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVD 462 KR+DP G ++R W+PEL ++ +H P + +L+YP P+V+ Sbjct: 392 AKRYDPDGEYVRRWVPELADLAAPAVHEPWKLRGLDRAALDYPEPVVE 439 >gi|170079261|ref|YP_001735899.1| DNA photolyase [Synechococcus sp. PCC 7002] gi|169886930|gb|ACB00644.1| DNA photolyase [Synechococcus sp. PCC 7002] Length = 514 Score = 184 bits (468), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 148/494 (29%), Positives = 234/494 (47%), Gaps = 42/494 (8%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGI-----SARQSHFIYASL 65 L+W R DLR+ D++ L A A++ + P + G+ A + F+ ++ Sbjct: 7 LLWYRRDLRLHDHQPLQEALAQQ-AQIFPFYCFDPRGFGSIGLDFPKTGAFRGQFLREAI 65 Query: 66 LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125 ++++L KG Q D + + C Q ++ ++ +R+ E R ++ L + Sbjct: 66 QDLRQNLRAKGSDLIVRQ----DIPEKLIPDLCQQWQIDVVYCHREVTAEETRVERKLRQ 121 Query: 126 RLQHR-VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL 184 LQ + V ++F + L PG + ++ +V+T FRK + + A P L Sbjct: 122 ALQEQGVRVETFWGTTLHDPGDLPFGINEVPEVFTQFRKDVEKYAAIASPVPTPTQLPPL 181 Query: 185 TGPVTPSNIPRFFDY--PFQAIDP--MFPI--GEQNALHILRKFCKE--KVYYYVEQRD- 235 V P IP D P IDP + P+ GE + L+ + E ++ Y E R+ Sbjct: 182 PETVAPGEIPSLQDLGLPEPTIDPRGVLPLKGGETAGMKRLQAYFWEGDRLKVYKETRNG 241 Query: 236 IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLM 295 + +S+ SP+L++G LS R ++ E + + + + EL+WR+++R + Sbjct: 242 LLGADYSSKFSPWLALGCLSARYIAAQVAEYEQKRIAN--NSTYWLIFELLWRDYFRWIC 299 Query: 296 A------FYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWM 349 A F P G KI W +D + W+ G TG P +DA MR+L G+M Sbjct: 300 AKHGNQIFQPEGLQGV-------KIPWKQDHEAFELWRTGQTGIPFVDANMRELLYTGFM 352 Query: 350 HNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIF 409 NR R SFL K+L +DWR G +F SQL+D D+ SN G W + A GND+ FR F Sbjct: 353 SNRGRQNVGSFLTKNLGIDWRWGAAWFESQLIDYDVCSNWGNWNYTAGVGNDARG-FRYF 411 Query: 410 NPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAP--HSWLDKND----LSLNYPLPIVDH 463 N Q K +DPQG ++RHWLPEL +P + IH P S + D L YP P+VD Sbjct: 412 NIPKQAKDYDPQGDYVRHWLPELAALPGEQIHQPWRLSVKELGDRQIILGETYPKPMVDL 471 Query: 464 KKACHHTLNQYYAA 477 + + Y A Sbjct: 472 QTSVQENERIYQKA 485 >gi|238618755|ref|YP_002913580.1| Deoxyribodipyrimidine photo-lyase [Sulfolobus islandicus M.16.4] gi|238379824|gb|ACR40912.1| Deoxyribodipyrimidine photo-lyase [Sulfolobus islandicus M.16.4] Length = 433 Score = 184 bits (467), Expect = 3e-44, Method: Compositional matrix adjust. Identities = 146/476 (30%), Positives = 219/476 (46%), Gaps = 51/476 (10%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHG--ISARQSHFIYASLLQV 68 L R DLR+ DN L A + + KVI FI P Q S +F+ SL ++ Sbjct: 4 LFIFRRDLRLDDNTGLIKALEDCE-KVIPAFILDPRQVGNENEYKSEFAINFMINSLNEL 62 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128 L ++G + F + E + + L + V ++ N Y RD+ + + + Sbjct: 63 NDELRKRGSRLYVY----FGLAEEVIKN--LLKDVDAVYLNEDYTPFSKMRDERIRRYCE 116 Query: 129 HR-VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187 I KSF+D +L N Y+ +T F N+V+ PV Sbjct: 117 DTGKIMKSFEDYLLTSKNDFKN-----YRNFTTF-----YNVVKNKQIRKPVQ------- 159 Query: 188 VTPSNIPRFFDYPFQAIDPMFPI-GEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246 +N ++ + P GE+ K +++D A + LS Sbjct: 160 ---NNYTNYYKNSLGDEHELPPRQGERGGRKEGIKLIGRARQIDYDRKDFVAEDNRTFLS 216 Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP 306 P+L G LS R+ + L + V + +L WR+FY L+A+Y +P Sbjct: 217 PHLKFGTLSIREVYYSLLDSQV------------IIRQLYWRDFY-TLLAYYNERVFHEP 263 Query: 307 FIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLL 366 IEW + L QAW +G TG+PIIDA MRQLN G + NR+RM+TA FLVK LL Sbjct: 264 LKREYNCIEWENNERLFQAWVEGKTGYPIIDAGMRQLNRTGDIPNRVRMLTAFFLVKVLL 323 Query: 367 VDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIR 426 +DWRIGE+YF S+L+D D + NNG WQW AS G D + FR+F+P Q +DP+ +++ Sbjct: 324 IDWRIGEKYFASKLIDYDPSVNNGNWQWIASVGTDYI--FRVFDPWKQQITYDPEAKYVK 381 Query: 427 HWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQSL 482 W+ EL + + IH + + K NYP IVD + + Y +K + Sbjct: 382 RWVDELESYDAEIIHNAYKYTLK-----NYPKSIVDWRIRVNLAKRLYEVCRKSKI 432 >gi|304571302|dbj|BAJ15769.1| cryptochrome1 [Cardamine nipponica] gi|304571304|dbj|BAJ15770.1| cryptochrome1 [Cardamine nipponica] gi|304571308|dbj|BAJ15772.1| cryptochrome1 [Cardamine nipponica] gi|304571310|dbj|BAJ15773.1| cryptochrome1 [Cardamine nipponica] gi|304571312|dbj|BAJ15774.1| cryptochrome1 [Cardamine nipponica] gi|304571322|dbj|BAJ15779.1| cryptochrome1 [Cardamine nipponica] gi|304571324|dbj|BAJ15780.1| cryptochrome1 [Cardamine nipponica] Length = 693 Score = 184 bits (467), Expect = 3e-44, Method: Compositional matrix adjust. Identities = 149/501 (29%), Positives = 237/501 (47%), Gaps = 47/501 (9%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 +VW R DLR+ DN AL AA VIA+F+ PE+ + ++ SL Q+ Sbjct: 3 IVWFRRDLRVEDNPALAAAVRA--GPVIALFVWAPEEEGHYHPGRVSRWWLKNSLAQLDS 60 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130 SL G + + DS+ L +++F+N Y+ + RD + L + Sbjct: 61 SLRSLGTCLITKRST---DSVASLLDVVKSTGASQIFFNHLYDPLSLVRDHRAKDVLTAQ 117 Query: 131 VIC-KSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189 I +SF+ +L P + + + + ++ F + + + LP P ++G V+ Sbjct: 118 GIAVRSFNADLLYEPWEVTDELGRPFSMFAAFWERCLSMPYDPESPLLP-PKKIISGDVS 176 Query: 190 P--SNIPRFFDYPFQAIDPMFP----IGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS 243 S+ F D + + + G NA L F + Y + R TS Sbjct: 177 KCVSDPLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSATTS 236 Query: 244 QLSPYLSIGVLSPRQCW--------------NRLKEEFVDLLIKPKSGAFSWLNELIWRE 289 LSP+ G +S R+ + N+ EE V+L +K + RE Sbjct: 237 FLSPHFHFGEVSVRKVFHLVRIKQVAWANEGNQAGEESVNLFLK----------SIGLRE 286 Query: 290 FYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWM 349 + R++ +P +P + + W D + +AW+QG TG+P++DA MR+L GW+ Sbjct: 287 YSRYISFNHP-YSHERPLLGHLKFFPWAVDENYFKAWRQGRTGYPLVDAGMRELWATGWL 345 Query: 350 HNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIF 409 H+R+R++ +SF VK L + WR G +YF LLD DL S+ GWQ+ T DS + RI Sbjct: 346 HDRIRVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYITGTLPDSREFDRID 405 Query: 410 NPTIQGKRFDPQGTFIRHWLPELNNVPTQYIH----APHSWLDKNDLSL--NYPLPI--V 461 NP +G +FDP G ++R WLPEL+ +PT++IH AP S L + L NYP P+ + Sbjct: 406 NPQFEGYKFDPNGEYVRRWLPELSRLPTEWIHHPWNAPESVLQAAGIELGSNYPRPVLGL 465 Query: 462 DHKKA-CHHTLNQYYAAKKQS 481 D KA H L+Q + + S Sbjct: 466 DEAKARLHEALSQMWQLEAAS 486 >gi|304571314|dbj|BAJ15775.1| cryptochrome1 [Cardamine nipponica] Length = 693 Score = 184 bits (467), Expect = 3e-44, Method: Compositional matrix adjust. Identities = 149/501 (29%), Positives = 237/501 (47%), Gaps = 47/501 (9%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 +VW R DLR+ DN AL AA VIA+F+ PE+ + ++ SL Q+ Sbjct: 3 IVWFRRDLRVEDNPALAAAVRA--GPVIALFVWAPEEEGHYHPGRVSRWWLKNSLAQLDS 60 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130 SL G + + DS+ L +++F+N Y+ + RD + L + Sbjct: 61 SLRSLGTCLITKRST---DSVASLLDVVKSTGASQIFFNHLYDPLSLVRDHRAKDVLTAQ 117 Query: 131 VIC-KSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189 I +SF+ +L P + + + + ++ F + + + LP P ++G V+ Sbjct: 118 GIAVRSFNADLLYEPWEVTDELGRPFSMFAAFWERCLSMPYDPESPLLP-PKKIISGDVS 176 Query: 190 P--SNIPRFFDYPFQAIDPMFP----IGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS 243 S+ F D + + + G NA L F + Y + R TS Sbjct: 177 KCVSDPLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSATTS 236 Query: 244 QLSPYLSIGVLSPRQCW--------------NRLKEEFVDLLIKPKSGAFSWLNELIWRE 289 LSP+ G +S R+ + N+ EE V+L +K + RE Sbjct: 237 FLSPHFHFGEVSVRKVFHLVRIKQVAWANEGNQAGEESVNLFLK----------SIGLRE 286 Query: 290 FYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWM 349 + R++ +P +P + + W D + +AW+QG TG+P++DA MR+L GW+ Sbjct: 287 YSRYISFNHP-YSHERPLLGHLKFFPWAVDENYFKAWRQGRTGYPLVDAGMRELWATGWL 345 Query: 350 HNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIF 409 H+R+R++ +SF VK L + WR G +YF LLD DL S+ GWQ+ T DS + RI Sbjct: 346 HDRIRVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYITGTLPDSREFDRID 405 Query: 410 NPTIQGKRFDPQGTFIRHWLPELNNVPTQYIH----APHSWLDKNDLSL--NYPLPI--V 461 NP +G +FDP G ++R WLPEL+ +PT++IH AP S L + L NYP P+ + Sbjct: 406 NPQFEGYKFDPNGEYVRRWLPELSRLPTEWIHHPWNAPESVLQAAGIELGSNYPRPVLGL 465 Query: 462 DHKKA-CHHTLNQYYAAKKQS 481 D KA H L+Q + + S Sbjct: 466 DEAKARLHEALSQMWQLEAAS 486 >gi|255581443|ref|XP_002531529.1| DNA photolyase, putative [Ricinus communis] gi|223528846|gb|EEF30848.1| DNA photolyase, putative [Ricinus communis] Length = 640 Score = 184 bits (467), Expect = 3e-44, Method: Compositional matrix adjust. Identities = 141/485 (29%), Positives = 229/485 (47%), Gaps = 55/485 (11%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 +VW R DLRI DN AL AA D ++ VFI P++ Q ++ SL + Sbjct: 7 IVWFRRDLRIEDNPALAAAAR--DGCILPVFIWCPQEEGQFYPGRVSRWWLKQSLAHLGH 64 Query: 71 SLSQKG----IVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYE-INEVRRDKLLEK 125 SL G ++ + + D + + + TK+ +NR Y+ ++ VR + EK Sbjct: 65 SLKSLGAELLLIKTHSTLAALLDCVNVIGA-------TKVVFNRLYDPVSLVRDHNIKEK 117 Query: 126 RLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLP----VPA 181 ++ + +S++ +L P I + + + + + + ++ + LP VPA Sbjct: 118 LVELGISIQSYNGDLLYEPWEIYDESGHAFMTFDQYWDKCLHMQMEP-VSHLPPWRLVPA 176 Query: 182 IRLTGPVTPSNIPRFFDYPFQAIDPMF----PIGEQNALHILRKFCKEKVYYYVEQRDIP 237 + + D ++ + + G NA L +F ++ + Y ++R Sbjct: 177 AETVNSCSVEELG-LEDEAEKSSNSLLGRAWSPGWSNADKALAEFVEQHLVNYSKKRLEV 235 Query: 238 AIQGTSQLSPYLSIGVLSPRQCW--------------NRLKEEFVDLLIKPKSGAFSWLN 283 TS LSPYL G LS R+ + N + E V L +K Sbjct: 236 GGNSTSLLSPYLHFGELSVRKVFHCVQMKQLLWAKEENSVGRESVTLFLK---------- 285 Query: 284 ELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQL 343 + RE+ R+L +P + F+ WN + +AW+QG TG+P++DA MR+L Sbjct: 286 SIGLREYSRYLCFNFP-YTHERSFLSNLRLFPWNANQAHFKAWRQGRTGYPLVDAGMREL 344 Query: 344 NTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSV 403 GW+HN++R+I +SF VK LL+ WR G +YF LLD D+ S+ GWQ+ + D Sbjct: 345 WATGWIHNKIRVIVSSFAVKALLLPWRWGMKYFWDTLLDADMESDILGWQYISGGLPDGH 404 Query: 404 PYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIH----APHSWLDKNDLSL--NYP 457 R+ +P IQG +FD G ++R WLPEL +PT++IH AP + L + L NYP Sbjct: 405 ELERLDSPEIQGSKFDADGEYVRQWLPELARMPTEWIHHPWDAPLAVLRAAGVELGQNYP 464 Query: 458 LPIVD 462 PIV+ Sbjct: 465 KPIVE 469 >gi|289551448|ref|YP_003472352.1| Deoxyribodipyrimidine photolyase [Staphylococcus lugdunensis HKU09-01] gi|289180979|gb|ADC88224.1| Deoxyribodipyrimidine photolyase [Staphylococcus lugdunensis HKU09-01] Length = 424 Score = 184 bits (467), Expect = 3e-44, Method: Compositional matrix adjust. Identities = 108/287 (37%), Positives = 153/287 (53%), Gaps = 12/287 (4%) Query: 144 PGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQA 203 P LN Q YKV+T F KA L Q R P +L + ++ + + Sbjct: 131 PSRTLNQQGQPYKVFTSFYKANRPQLRQR--RRYPYQLDKLKQQIINAD-----NTSVKK 183 Query: 204 IDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRL 263 + IGE + + F + +Y R+ TSQLS L+ G L + +L Sbjct: 184 VTEHINIGEAKSQQQWQAFLNNNIEHYQYYREYLPETLTSQLSIALAYGFLDINEIMRQL 243 Query: 264 KEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLL 323 E + D + +++ EL++REFY LM +YP F + I W+++ Sbjct: 244 LERYHD----NEENYEAFIRELLFREFYYVLMVYYPETA-HTSFNDKYKHITWSENQSDF 298 Query: 324 QAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDG 383 AWK+G TG+PIIDAAM +L G+MHNR+RM+TA FL K+L +DW GE YF + L+D Sbjct: 299 NAWKEGRTGYPIIDAAMHELKQTGFMHNRMRMVTAQFLTKELFIDWTWGENYFKNLLIDY 358 Query: 384 DLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLP 430 D ASN GWQW+ASTG D+VPYFR+FNP Q +RFD + ++H P Sbjct: 359 DAASNVHGWQWSASTGTDAVPYFRMFNPIRQSERFDKKVYTLKHTCP 405 >gi|146276865|ref|YP_001167024.1| deoxyribodipyrimidine photo-lyase [Rhodobacter sphaeroides ATCC 17025] gi|145555106|gb|ABP69719.1| Deoxyribodipyrimidine photo-lyase type I [Rhodobacter sphaeroides ATCC 17025] Length = 470 Score = 184 bits (466), Expect = 3e-44, Method: Compositional matrix adjust. Identities = 140/474 (29%), Positives = 215/474 (45%), Gaps = 25/474 (5%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 ++W R DLR+TDN + A ++ VFI PE R + + Q + Sbjct: 7 ILWFRRDLRLTDNPMVREAAATGR-PLVPVFILDPETERLGAAPKWRLGLAVEAFAQALE 65 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130 L + I+ + ++E L + + ++R E RD+ ++ L+ + Sbjct: 66 RLGSRLILRR-------GPALEVLGRLAAETGALGVRWSRLCEPGWRSRDEGVKAGLKRQ 118 Query: 131 VIC-KSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLR---SLPVPAI-RLT 185 I +S L P + Y+V+TPF K++ V A + L P + + Sbjct: 119 GIAAESHAGHTLFEPWEVRTGQGGFYRVFTPFWKSVKDRPVPAPVAAPAGLRAPTVWPRS 178 Query: 186 GPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245 + + R + + +GE A L +F V Y RD TS+L Sbjct: 179 DRLADWGLARAMNRGAAVVARHVAVGEAAAAERLARFLDNPVDRYAAGRDRTDQAVTSRL 238 Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305 S L+ G +S R W+ + + ++GA +L EL+WREF HL+ P + Sbjct: 239 SENLTYGEISARTIWH----AGLRARAEGRAGAEKFLQELVWREFAWHLLYHTPEIASRN 294 Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365 W + W D+ + W++G TG P +DAAMR+L G MHNR R+I S+L K L Sbjct: 295 WRGEW-DAFPWRADNAEAERWRRGMTGEPFVDAAMRELFLTGTMHNRARLIAGSYLTKHL 353 Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425 L DWR+G+ +F L+D D ASN GWQW A +G D+ PYFR+FNP Q ++FDP G + Sbjct: 354 LTDWRVGQAWFEDCLIDWDPASNALGWQWVAGSGPDASPYFRVFNPATQAEKFDPDGAYR 413 Query: 426 RHWLPELNNVPTQ-----YIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQY 474 R ++ EL+ P + P SW D YP P+V + L Y Sbjct: 414 RRFIAELSPDPGPEALSFFEAVPRSWGLAPDQC--YPRPVVGLAEGRARALAAY 465 >gi|304571316|dbj|BAJ15776.1| cryptochrome1 [Cardamine nipponica] Length = 693 Score = 184 bits (466), Expect = 4e-44, Method: Compositional matrix adjust. Identities = 149/501 (29%), Positives = 236/501 (47%), Gaps = 47/501 (9%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 +VW R DLR+ DN AL AA VIA+F+ PE+ + ++ SL Q+ Sbjct: 3 IVWFRRDLRVEDNPALAAAVRA--GPVIALFVWAPEEEGHYHPGRVSRWWLKNSLAQLDS 60 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130 SL G + + DS+ L +++F+N Y+ + RD + L + Sbjct: 61 SLRSLGTCLITKRST---DSVASLLDVVKSTGASQIFFNHLYDPLSLVRDHRAKDVLTAQ 117 Query: 131 VIC-KSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG--P 187 I +SF+ +L P + + + + ++ F + + + LP P ++G P Sbjct: 118 GIAVRSFNADLLYEPWEVTDELGRPFSMFAAFWERCLSMPYDPESPLLP-PKKIISGDVP 176 Query: 188 VTPSNIPRFFDYPFQAIDPMFP----IGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS 243 S+ F D + + + G NA L F + Y + R TS Sbjct: 177 KCVSDPLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSATTS 236 Query: 244 QLSPYLSIGVLSPRQCW--------------NRLKEEFVDLLIKPKSGAFSWLNELIWRE 289 LSP+ G +S R+ + N+ EE V+L +K + RE Sbjct: 237 FLSPHFHFGEVSVRKVFHLVRIKQVAWANEGNQAGEESVNLFLK----------SIGLRE 286 Query: 290 FYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWM 349 + R++ +P +P + + W D + +AW+QG TG+P++DA MR+L GW+ Sbjct: 287 YSRYISFNHP-YSHERPLLGHLKFFPWAVDENYFKAWRQGRTGYPLVDAGMRELWATGWL 345 Query: 350 HNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIF 409 H+R+R++ +SF VK L + WR G +YF LLD DL S+ GWQ+ T DS + RI Sbjct: 346 HDRIRVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYITGTLPDSREFDRID 405 Query: 410 NPTIQGKRFDPQGTFIRHWLPELNNVPTQYIH----APHSWLDKNDLSL--NYPLPI--V 461 NP +G +FDP G ++R WLPEL+ +PT++IH AP S L + L NYP P+ + Sbjct: 406 NPQFEGYKFDPNGEYVRRWLPELSRLPTEWIHHPWNAPESVLQAAGIELGSNYPRPVLGL 465 Query: 462 DHKKA-CHHTLNQYYAAKKQS 481 D KA H L+Q + + S Sbjct: 466 DEAKARLHEALSQMWQLEAAS 486 >gi|313242055|emb|CBY34235.1| unnamed protein product [Oikopleura dioica] Length = 539 Score = 183 bits (465), Expect = 5e-44, Method: Compositional matrix adjust. Identities = 146/500 (29%), Positives = 235/500 (47%), Gaps = 51/500 (10%) Query: 6 AMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQ---WRQHGISARQSHFIY 62 + + L R DLR+ DN +L A + +++ VF+ PEQ + S F+ Sbjct: 53 GVKIALFIFRRDLRLIDNTSLIQAIKDG-YRILPVFVFPPEQIDPEKNEWFSHPSVQFMC 111 Query: 63 ASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKL 122 SL + + L ++ + + H ++E + + + YN Y + RD Sbjct: 112 ESLNDLGRQLKEE-VDGKLHLF--MGGNLETIKKIKEVVNFSAIAYNEDYSVYARERDGE 168 Query: 123 LEKRLQ-HRVICKSFDDSVLLPPGSILNHAL----QMYKVYTPFRKALIQNLVQADLRSL 177 +E+ + + V +D LLP +H + Y+V + F K IQ D+R Sbjct: 169 IEEWAESNNVEIIKEEDYGLLPIKDAWHHPKDGPPKPYRVLSIFFKH-IQKFY--DIRK- 224 Query: 178 PVPAIRLTGPVTPSNIPRF-FDYPFQAIDPMFPIGEQNA--------LHILRKFCKEKVY 228 P + +F F + ++ ++ E+ A L L K +K Y Sbjct: 225 --PESNFEFEASQFTQSKFSFKFSISKLNTLYNANEKLAERGGRLVGLIGLEKIKNKKDY 282 Query: 229 YYVEQRDIPAIQ-GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIW 287 E R+ ++ GT+++S +L G +S R+ + R E F + + +L++ Sbjct: 283 N--ETRNFMHLKAGTTKMSAHLKFGTVSIREMYWRTAELFGE--------THDLIRQLVF 332 Query: 288 REFYRHLMAFYPSVCMGKPFIPWT-EKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTI 346 R+FY + + P + G E+I W+ D L AW +G TGFP++DAA RQL I Sbjct: 333 RDFYLKIYSHNPELQRGTALQAGVDERIPWSDDEKLWTAWCEGMTGFPLVDAAQRQLKEI 392 Query: 347 GWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYF 406 GW HNR+RM+T L K ++DWR G ++F L+D D+ +N GW W +STG D+VPYF Sbjct: 393 GWQHNRMRMLTGCVLTKYFMIDWRKGMKFFYQNLVDADVFNNTAGWGWVSSTGPDAVPYF 452 Query: 407 R-IFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLD--------KNDLSLNYP 457 R FNP IQ K+FD +G +I+ ++PEL +V + H W D KN YP Sbjct: 453 RPPFNPWIQSKKFDLEGKYIKQYIPELADVSPADL---HKWGDASIRAKYKKNKKVQAYP 509 Query: 458 LPIVDHKKACHHTLNQYYAA 477 P+V H +A + + Y A Sbjct: 510 APVVKHDEASKNAVYLYKKA 529 >gi|13605525|gb|AAK32756.1|AF361588_1 AT4g08920/hy4 [Arabidopsis thaliana] Length = 681 Score = 183 bits (465), Expect = 5e-44, Method: Compositional matrix adjust. Identities = 150/501 (29%), Positives = 235/501 (46%), Gaps = 47/501 (9%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 +VW R DLR+ DN AL AA V A+F+ PE+ + ++ SL Q+ Sbjct: 15 IVWFRRDLRVEDNPALAAAVRA--GPVNALFVWAPEEEGHYHPGRVSRWWLKNSLAQLDS 72 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130 SL G + + DS+ L +++F+N Y+ + RD + L + Sbjct: 73 SLRSLGTCLITKRST---DSVASLLDVVKSTGASQIFFNHLYDPLSLVRDHRAKDVLTAQ 129 Query: 131 VIC-KSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189 I +SF+ +L P + + + + ++ F + + + LP P ++G V+ Sbjct: 130 GIAVRSFNADLLYEPWEVTDELGRPFSMFAAFWERCLSMPYDPESPLLP-PKKIISGDVS 188 Query: 190 P--SNIPRFFDYPFQAIDPMFP----IGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS 243 ++ F D + + + G N L F + Y + R TS Sbjct: 189 KCVADPLVFEDDSEKGSNALLARAWSPGWSNGDKALTTFINGPLLEYSKNRRKADSATTS 248 Query: 244 QLSPYLSIGVLSPRQCW--------------NRLKEEFVDLLIKPKSGAFSWLNELIWRE 289 LSP+L G +S R+ + N EE V+L +K + RE Sbjct: 249 FLSPHLHFGEVSVRKVFHLVRIKQVAWANEGNEAGEESVNLFLK----------SIGLRE 298 Query: 290 FYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWM 349 + R++ +P +P + + W D + +AW+QG TG+P++DA MR+L GW+ Sbjct: 299 YSRYISFNHP-YSHERPLLGHLKFFPWAVDENYFKAWRQGRTGYPLVDAGMRELWATGWL 357 Query: 350 HNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIF 409 H+R+R++ +SF VK L + WR G +YF LLD DL S+ GWQ+ T DS + RI Sbjct: 358 HDRIRVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYITGTLPDSREFDRID 417 Query: 410 NPTIQGKRFDPQGTFIRHWLPELNNVPTQYIH----APHSWLDKNDLSL--NYPLPIV-- 461 NP +G +FDP G ++R WLPEL+ +PT +IH AP S L + L NYPLPIV Sbjct: 418 NPQFEGYKFDPNGEYVRRWLPELSRLPTDWIHHPWNAPESVLQAAGIELGSNYPLPIVGL 477 Query: 462 DHKKA-CHHTLNQYYAAKKQS 481 D KA H L+Q + + S Sbjct: 478 DEAKARLHEALSQMWQLEAAS 498 >gi|113197027|gb|ABI31780.1| cryptochrome 1 protein [Brassica rapa] Length = 704 Score = 183 bits (464), Expect = 6e-44, Method: Compositional matrix adjust. Identities = 156/524 (29%), Positives = 241/524 (45%), Gaps = 69/524 (13%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 +VW R DLR+ DN AL AA VIAVF+ PE+ + ++ SL Q+ Sbjct: 13 IVWFRRDLRVEDNPALAAAVRA--GPVIAVFVWAPEEEGHYQPGRVSRWWLKNSLAQLDS 70 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130 SL G + + DS+ L +++F+N Y+ + RD + L Sbjct: 71 SLRSLGTCLITKRST---DSVASLLEVVKSTGASQIFFNHLYDPLSLVRDHRAKDALTAE 127 Query: 131 VIC-KSFDDSVLLPPGSILNHALQMYKVYTPF-----------------RKALIQNLVQ- 171 I KSF+ +L P + + + + ++ F K +I L+ Sbjct: 128 GIAVKSFNADLLYEPWEVTDELGRPFSMFAAFWERCLSMPYDPESPLLPPKKIISGLLLH 187 Query: 172 ---ADLRSLP--VPAIRLTGPVTP--SNIPRFFDYPFQAIDPMFP----IGEQNALHILR 220 +++ S P + L G V+ ++ F D + + + G NA L Sbjct: 188 HTLSEIVSYPLLITLFVLAGDVSKCVADTLIFEDESEKGSNALLARAWSPGWSNADKALT 247 Query: 221 KFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCW--------------NRLKEE 266 F + Y + R TS LSP+L G +S R+ + N+ EE Sbjct: 248 TFINGPLIEYSKNRRKADSATTSFLSPHLHFGEVSVRKVFHLLRIKQVAWANEGNQAGEE 307 Query: 267 FVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAW 326 V+L +K + RE+ R++ +P +P + + W D + +AW Sbjct: 308 SVNLFLK----------SIGLREYSRYISFNHP-YSHERPLLGHLKFFPWAVDENYFKAW 356 Query: 327 KQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLA 386 +QG TG+P++DA MR+L GW+H+R+R++ +SF VK L + WR G +YF LLD DL Sbjct: 357 RQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLE 416 Query: 387 SNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIH----A 442 S+ GWQ+ T DS + RI NP +G +FDP G ++R WLPEL+ +PT++IH A Sbjct: 417 SDALGWQYITGTLPDSREFDRIDNPQFEGYKFDPNGEYVRRWLPELSRLPTEWIHHPWNA 476 Query: 443 PHSWLDKNDLSL--NYPLPIV--DHKKA-CHHTLNQYYAAKKQS 481 P S L + L NYP PIV D KA H L+Q + + S Sbjct: 477 PESVLQAAGIELGSNYPRPIVGLDEAKARLHEALSQMWQLEAAS 520 >gi|304571306|dbj|BAJ15771.1| cryptochrome1 [Cardamine nipponica] Length = 693 Score = 182 bits (463), Expect = 8e-44, Method: Compositional matrix adjust. Identities = 148/501 (29%), Positives = 237/501 (47%), Gaps = 47/501 (9%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 +VW R DLR+ DN AL AA VIA+F+ PE+ + ++ SL Q+ Sbjct: 3 IVWFRRDLRVEDNPALAAAVRA--GPVIALFVWAPEEEGHYHPGRVSRWWLKNSLAQLDS 60 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130 SL G + + DS+ L +++F+N Y+ + RD + L + Sbjct: 61 SLRSLGTCLITKRST---DSVASLLDVVKSTGASQIFFNHLYDPLSLVRDHRAKDVLTAQ 117 Query: 131 VIC-KSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189 I +SF+ +L P + + + + ++ F + + + LP P ++G V+ Sbjct: 118 GIAVRSFNADLLYEPWEVTDELGRPFSMFAAFWERCLSMPYDPESPLLP-PKKIISGDVS 176 Query: 190 P--SNIPRFFDYPFQAIDPMFP----IGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS 243 S+ F D + + + G NA L F + Y + R TS Sbjct: 177 KCVSDPLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSATTS 236 Query: 244 QLSPYLSIGVLSPRQCW--------------NRLKEEFVDLLIKPKSGAFSWLNELIWRE 289 LSP+ G +S R+ + N+ EE V+L +K + RE Sbjct: 237 FLSPHFHFGEVSVRKVFHLVRIKQVAWANEGNQAGEESVNLFLK----------SIGLRE 286 Query: 290 FYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWM 349 + R++ +P +P + + W D + +AW+QG TG+P++DA M++L GW+ Sbjct: 287 YSRYISFNHP-YSHERPLLGHLKFFPWAVDENYFKAWRQGRTGYPLVDAGMKELWATGWL 345 Query: 350 HNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIF 409 H+R+R++ +SF VK L + WR G +YF LLD DL S+ GWQ+ T DS + RI Sbjct: 346 HDRIRVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYITGTLPDSREFDRID 405 Query: 410 NPTIQGKRFDPQGTFIRHWLPELNNVPTQYIH----APHSWLDKNDLSL--NYPLPI--V 461 NP +G +FDP G ++R WLPEL+ +PT++IH AP S L + L NYP P+ + Sbjct: 406 NPQFEGYKFDPNGEYVRRWLPELSRLPTEWIHHPWNAPESVLQAAGIELGSNYPRPVLGL 465 Query: 462 DHKKA-CHHTLNQYYAAKKQS 481 D KA H L+Q + + S Sbjct: 466 DEAKARLHEALSQMWQLEAAS 486 >gi|110004787|emb|CAK99121.1| putative deoxyribodipyrimidine photolyase protein [Spiroplasma citri] Length = 435 Score = 182 bits (463), Expect = 8e-44, Method: Compositional matrix adjust. Identities = 136/449 (30%), Positives = 212/449 (47%), Gaps = 73/449 (16%) Query: 17 DLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQKSLSQKG 76 D RI DN L A N + K+ +FI T EQ + + + +S + +++ K L++K Sbjct: 9 DFRIEDNLGL-AQLANEEKKIYLLFIFTKEQIKANNYFSSRS---FQAMVHCLKQLTKKV 64 Query: 77 IVFQYHQCSNFDDSIEWLDSYCLQQ--RVTKLFYNRQYEINEVRRDKLLEK-RLQHRVIC 133 V + + N I++L L+Q ++ K++ NR Y + R K + + ++ I Sbjct: 65 HV-NFLKSENEQTGIKFL----LEQGYKINKIYTNRDYTPFALNRSKAMRQLSKEYNFIY 119 Query: 134 KSFDDSVLLPPGSILNHALQMYKVYTPFRKAL-------------IQNLVQADLRSLPVP 180 + FDD VLL P +I Y V+TPF L + + L+ L + Sbjct: 120 REFDDYVLLEPWTIKTTQNGYYTVFTPFWNKLKEHFNDNHIITYKVNPFLPQHLKDLEIL 179 Query: 181 AIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ 240 + N+P F+ + MF + + Y + RD+ ++ Sbjct: 180 QDITNVKSSDFNLPLEFE---KVKTAMFQLNQN----------------YQQTRDLVDLE 220 Query: 241 -GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAF--SWLNELIWREFYRHLM-- 295 GT+++S L GV+S RQC+ L K G F ++ +L WR+FY + Sbjct: 221 NGTAKISTALKFGVVSIRQCY---------LWSIEKFGTFDNAFARQLAWRDFYYQVTYN 271 Query: 296 -AFYPSVCMG-----KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWM 349 + C K I WT +EW Q W+ G TG+ IDA M++L G + Sbjct: 272 AQLHQQWCFSENWNKKITINWTNNLEW------FQKWQNGETGYDFIDAGMKELKETGLL 325 Query: 350 HNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIF 409 HNR RM+ ASFLVK+L +DW GE+YF QL+D D N WQW A TG D+ P+FRIF Sbjct: 326 HNRARMVCASFLVKNLQIDWHKGEQYFAQQLIDYDPIINQCSWQWVAGTGFDAQPFFRIF 385 Query: 410 NPTIQGKRFDPQGTFIRHWL---PELNNV 435 NP +Q K++DP ++ +L P +N + Sbjct: 386 NPELQQKKYDPTSSYCNKFLKNRPTINKI 414 >gi|304571318|dbj|BAJ15777.1| cryptochrome1 [Cardamine nipponica] gi|304571320|dbj|BAJ15778.1| cryptochrome1 [Cardamine nipponica] Length = 693 Score = 182 bits (463), Expect = 8e-44, Method: Compositional matrix adjust. Identities = 148/501 (29%), Positives = 236/501 (47%), Gaps = 47/501 (9%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 +VW R DLR+ DN AL AA VIA+F+ PE+ + ++ SL Q+ Sbjct: 3 IVWFRRDLRVEDNPALAAAVRA--GPVIALFVWAPEEEGHYHPGRVSRWWLKNSLAQLDS 60 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130 SL G + + DS+ L +++F+N Y+ + RD + L + Sbjct: 61 SLRSLGTCLITKRST---DSVASLLDVVKSTGASQIFFNHLYDPLSLVRDHRAKDVLTAQ 117 Query: 131 VIC-KSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189 I +SF+ +L P + + + + ++ F + + + LP P ++G V+ Sbjct: 118 GIAVRSFNADLLYEPWEVTDELGRPFSMFAAFWERCLSMPYDPESPLLP-PKKIISGDVS 176 Query: 190 P--SNIPRFFDYPFQAIDPMFP----IGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS 243 S+ F D + + + G NA L F + Y + R TS Sbjct: 177 KCVSDPLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSATTS 236 Query: 244 QLSPYLSIGVLSPRQCW--------------NRLKEEFVDLLIKPKSGAFSWLNELIWRE 289 LSP+ G +S R+ + N+ EE V+L +K + RE Sbjct: 237 FLSPHFHFGEVSVRKVFHLVRIKQVAWANEGNQAGEESVNLFLK----------SIGLRE 286 Query: 290 FYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWM 349 + R++ +P +P + + W D + +AW+QG TG+P++DA MR+L GW+ Sbjct: 287 YSRYISFNHP-YSHERPLLGHLKFFPWAVDENYFKAWRQGRTGYPLVDAGMRELWATGWL 345 Query: 350 HNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIF 409 H+R+R++ +SF VK L + WR G +YF LLD DL S+ GWQ+ T DS + RI Sbjct: 346 HDRIRVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYITGTLPDSREFDRID 405 Query: 410 NPTIQGKRFDPQGTFIRHWLPELNNVPTQYIH----APHSWLDKNDLSL--NYPLPI--V 461 NP +G +FDP G ++R WLPEL+ +PT++IH P S L + L NYP P+ + Sbjct: 406 NPQFEGYKFDPNGEYVRRWLPELSRLPTEWIHHPWNTPESVLQAAGIELGSNYPRPVLGL 465 Query: 462 DHKKA-CHHTLNQYYAAKKQS 481 D KA H L+Q + + S Sbjct: 466 DEAKARLHEALSQMWQLEAAS 486 >gi|329850702|ref|ZP_08265547.1| deoxyribodipyrimidine photo-lyase [Asticcacaulis biprosthecum C19] gi|328841017|gb|EGF90588.1| deoxyribodipyrimidine photo-lyase [Asticcacaulis biprosthecum C19] Length = 280 Score = 182 bits (462), Expect = 1e-43, Method: Compositional matrix adjust. Identities = 103/268 (38%), Positives = 140/268 (52%), Gaps = 21/268 (7%) Query: 207 MFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEE 266 +F GE A LR+F + Y + RD P TS LSP+L G +SPR+ L ++ Sbjct: 23 IFKPGEAGARGALRRFLASGLADYEDGRDRPDKDLTSYLSPHLRFGEISPRRILTEL-DK 81 Query: 267 FVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAW 326 V + + A + EL+WREF +++ P + + F W +AW Sbjct: 82 VVRSTPRLVAPAEKFRKELVWREFNYNILDLQPELHT-RNFRDDFSTFPWQSSDKDFRAW 140 Query: 327 KQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLA 386 +G TG+P++DA M+QL G+MHNR+RM+ ASFLVK LL+DWR GE++F LLD D A Sbjct: 141 ARGETGYPLVDAGMKQLWQTGFMHNRVRMVCASFLVKHLLIDWRRGEQWFWDCLLDADPA 200 Query: 387 SNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSW 446 SN G WQW A G D+ PYFR+FNP Q +FDP + R Sbjct: 201 SNPGNWQWVAGCGADAAPYFRVFNPITQADKFDPDDIYRRK------------------- 241 Query: 447 LDKNDLSLNYPLPIVDHKKACHHTLNQY 474 DK ++ YP PIVDH A L+ Y Sbjct: 242 FDKPRGTVPYPRPIVDHAFARERALDAY 269 >gi|255964973|gb|ACU44659.1| cryptochrome 1 [Medicago sativa] Length = 676 Score = 182 bits (462), Expect = 1e-43, Method: Compositional matrix adjust. Identities = 149/498 (29%), Positives = 231/498 (46%), Gaps = 56/498 (11%) Query: 3 ATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIY 62 +++ +VW R DLR+ DN AL A V+ VFI PE+ Q+ ++ Sbjct: 2 SSSGGGCSIVWFRRDLRVEDNPALAAGVRA--GAVVGVFIWAPEEEGQYYPGRVSRWWLK 59 Query: 63 ASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYE-INEVRRDK 121 SL + SL G + + DS+ L T++F+N Y+ ++ VR + Sbjct: 60 NSLAHLDSSLRNLGTPLVTKRST---DSVSSLLEVVKSTGATQIFFNHLYDPLSLVRDHR 116 Query: 122 LLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPA 181 E + +SF+ +L P + + Q + + F + + + D ++ P+P Sbjct: 117 AKEILTAQGITVRSFNSDLLYEPWDVNDENGQPFTTFDSFWERCLS--MPYDPQAPPLPP 174 Query: 182 IRLT-GPVT--PSNIPRFFDYPFQAIDPMFP----IGEQNALHILRKFCKEKVYYYVEQR 234 R+ G V+ PS+ F D +A + + G NA L F + Y + R Sbjct: 175 KRIIPGDVSKCPSDTLVFEDDLEKASNALLARAWSPGWSNANKALTTFINGPLIEYSKNR 234 Query: 235 DIPAIQGTSQLSPYLSIGVLSPRQC----------W----NRLKEEFVDLLIKPKSGAFS 280 TS LSP+L G +S ++ W N EE V+L +K Sbjct: 235 RKADSATTSFLSPHLHFGEVSVKKVLHLVRIKQVFWANEGNEAGEESVNLFLK------- 287 Query: 281 WLNELIWREFYRHLMAFYPSVCMGKP-----FIPWTEKIEWNKDSHLLQAWKQGYTGFPI 335 + RE+ R++ +P P F PW + +AW+QG TG+P+ Sbjct: 288 ---SIGLREYSRYISFNHPYSHERPPLGHLKFFPWV------VNEGYFKAWRQGRTGYPL 338 Query: 336 IDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWA 395 +DA MR+L GW+H+R+R++ +SF VK L + WR G +YF LLD DL S+ GWQ+ Sbjct: 339 VDAGMRELWATGWLHDRIRVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYI 398 Query: 396 ASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIH----APHSWLDKND 451 + T D + RI NP +G + DP G ++R WLPEL +PT++IH AP S L Sbjct: 399 SGTLPDGREFDRIDNPQFEGYKCDPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAG 458 Query: 452 LSL--NYPLPIVDHKKAC 467 + L NYPLPIV+ A Sbjct: 459 IELGSNYPLPIVEIDAAT 476 >gi|219888079|gb|ACL54414.1| unknown [Zea mays] Length = 688 Score = 182 bits (461), Expect = 1e-43, Method: Compositional matrix adjust. Identities = 147/478 (30%), Positives = 227/478 (47%), Gaps = 32/478 (6%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 +VW R DLR+ DN AL AA +V+ ++ +PE+ + +I SL + Sbjct: 4 VVWFRRDLRVEDNPALAAAARAG-GEVVPAYVWSPEEEGPYYPGRVSRWWISQSLNHLDA 62 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYE-INEVRRDKLLEKRLQH 129 SL + G + S D+ L T +++N Y+ I+ VR +L E Sbjct: 63 SLRRLGAGKLVTRRSA--DAAVALLQLVRDTGATHVYFNHLYDPISLVRDRRLKEMLAAE 120 Query: 130 RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189 ++ +SF+ +L P +++ Q + ++ PF + LP I +G ++ Sbjct: 121 GIVVQSFNSDLLYEPWEVVDDEGQPFTMFDPFWNRCLSMPYDPPAPLLPPKRIN-SGDLS 179 Query: 190 --PSNIPRFFDYPFQAIDPMFP----IGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS 243 PS F D + + + G QNA L F + Y R TS Sbjct: 180 MCPSEDLIFEDESERGSNALLARAWTPGWQNADKALTAFLNGPLADYSVNRKKADSASTS 239 Query: 244 QLSPYLSIGVLSPRQCWN--RLKEEFVDLLIKPKSGAFS-------WLNELIWREFYRHL 294 LSP+L G LS R+ ++ R+K+ L+ G + +L + RE+ R+L Sbjct: 240 LLSPHLHFGELSVRKVFHLVRMKQ-----LVWSNEGNHAAEESCTLFLRSIGLREYSRYL 294 Query: 295 MAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLR 354 +PS +P + W D + W+QG TG+P++DA MR+L GW+H+R+R Sbjct: 295 SFNHPS-SHERPLLAHLRFFPWVVDESYFKIWRQGRTGYPLVDAGMRELWATGWLHDRIR 353 Query: 355 MITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQ 414 ++ ASF VK L + WR G +YF LLD DL S+ GWQ+ + D RI NP + Sbjct: 354 VVVASFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYITGSLPDGRELDRIDNPQFE 413 Query: 415 GKRFDPQGTFIRHWLPELNNVPTQYIH----APHSWLDKNDLSL--NYPLPIVDHKKA 466 G +FDP G ++R W+PEL +PT++IH AP S L + L NYPLPIV+ A Sbjct: 414 GYKFDPHGEYVRRWIPELARLPTEWIHHPWDAPVSVLQAAGIELGSNYPLPIVELDAA 471 >gi|161138118|gb|ABX58030.1| cryptochrome 2 [Triticum aestivum] Length = 650 Score = 182 bits (461), Expect = 1e-43, Method: Compositional matrix adjust. Identities = 141/474 (29%), Positives = 231/474 (48%), Gaps = 30/474 (6%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 +VW R DLRI DN AL AA D V+ VFI P + + ++ SL + + Sbjct: 8 VVWFRRDLRIDDNPALAAAAR--DGAVLPVFIWCPAEEGRFYTGRCSRWWLKESLAHLAR 65 Query: 71 SLSQKG--IVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYE-INEVRRDKLLEKRL 127 SL G +V Q + ++ +DS T++ YN Y+ I+ VR DK+ + L Sbjct: 66 SLQALGCPLVLIRAQ-TTLAALLQCVDSIG----ATRVVYNHLYDPISLVRDDKIKNELL 120 Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQ-----ADLRSLPVPAI 182 + +SF+ +L P + + + + + + ++ + A R +PV I Sbjct: 121 GLGISMQSFNGDLLYEPWEVYDENGLAFTTFKKYWEKCMKLHIDISPSLAPWRLVPVSGI 180 Query: 183 RLTGPVTPSNIPRFFDYPFQAIDPMFPI----GEQNALHILRKFCKEKVYYYVEQRDIPA 238 + N+ ++ + + G +NA L F + Y + R A Sbjct: 181 ENICSSSIDNLGLESSKDEESSNALLSRAWSPGWRNAEKTLEDFVSHGLLDYSKDRMKVA 240 Query: 239 IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLN----ELIWREFYRHL 294 TS LSPYL G +S R+ + ++ + + + KSGA +N + RE+ R+L Sbjct: 241 GTTTSLLSPYLHYGEVSVRKIYQLVRVQQIKWENEGKSGAGESVNLFLLSIGLREYSRYL 300 Query: 295 MAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLR 354 +P + + + W D ++W+QG TG+P++DA MR+L GW HNR+R Sbjct: 301 CFNFP-FTHERSLLGNLKHYPWRADEDRFKSWRQGMTGYPLVDAGMRELWATGWTHNRIR 359 Query: 355 MITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQ 414 +I +SF VK L + W G +YF LLD D+ S+ GWQ+ + + D R+ NP +Q Sbjct: 360 VIVSSFAVKFLQIPWTWGMKYFWDVLLDADIESDILGWQYISGSLPDGHELGRLDNPEVQ 419 Query: 415 GKRFDPQGTFIRHWLPELNNVPTQYIH----APHSWLD--KNDLSLNYPLPIVD 462 G+++DP G ++R W+PEL +P ++IH AP S L+ +L NYP+PIV+ Sbjct: 420 GQKYDPDGEYVRTWIPELARMPGEWIHHPWDAPSSILEVAGVELGFNYPMPIVE 473 >gi|261876447|dbj|BAI47549.1| cryptochrome1 [Glycine max] gi|261876449|dbj|BAI47550.1| cryptochrome1 [Glycine max] Length = 682 Score = 182 bits (461), Expect = 1e-43, Method: Compositional matrix adjust. Identities = 147/488 (30%), Positives = 228/488 (46%), Gaps = 44/488 (9%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 +VW R DLRI DN AL A V+AVFI PE+ Q+ ++ SL + Sbjct: 9 IVWFRRDLRIEDNPALTAGVRA--GAVVAVFIWAPEEEGQYYPGRVSRWWLKNSLAHLDS 66 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYE-INEVRRDKLLEKRLQH 129 SL G + + D++ L T+LF+N Y+ ++ VR + E Sbjct: 67 SLRNLGTPLITKRST---DTLSSLFEVVKSTGATQLFFNHLYDPLSLVRDHRAKEVLTAQ 123 Query: 130 RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189 + +SF+ +L P + + + + + F + + + LP P + G + Sbjct: 124 GITVRSFNADLLYEPWDVNDAHGRPFTTFAAFWERCLSMPYDPESPLLP-PKRIIPGDAS 182 Query: 190 --PSNIPRFFDYPFQAIDPMFP----IGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS 243 PS+ F D +A + + G NA L F + Y + R TS Sbjct: 183 RCPSDTLLFEDELEKASNALLARAWSPGWSNANKALTTFINGPLIEYSKNRRKADSATTS 242 Query: 244 QLSPYLSIGVLSPRQCW--------------NRLKEEFVDLLIKPKSGAFSWLNELIWRE 289 LSP+L G LS ++ + N+ EE V+L +K + RE Sbjct: 243 LLSPHLHFGELSVKKVFHLVRIKQVLWANEGNKAGEESVNLFLK----------SIGLRE 292 Query: 290 FYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWM 349 + R++ +P +P + + W + +AW+QG TG+P++DA MR+L GW+ Sbjct: 293 YSRYISFNHP-YSHERPLLGHLKFFPWVVNEGYFKAWRQGRTGYPLVDAGMRELWATGWL 351 Query: 350 HNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIF 409 H+R+R++ +SF VK L + WR G +YF LLD DL S+ GWQ+ + + D RI Sbjct: 352 HDRIRVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGSLPDGREIDRID 411 Query: 410 NPTIQGKRFDPQGTFIRHWLPELNNVPTQYIH----APHSWLDKNDLSL--NYPLPIVDH 463 NP +G +FDP G ++R WLPEL+ +PT++IH AP S L + L NYPLPIV Sbjct: 412 NPQFEGYKFDPNGEYVRRWLPELSRLPTEWIHHPWNAPESVLQAAGIELGSNYPLPIVGI 471 Query: 464 KKACHHTL 471 A + L Sbjct: 472 DAAKNRLL 479 >gi|261876455|dbj|BAI47553.1| cryptochrome1 [Glycine max] gi|261876457|dbj|BAI47554.1| cryptochrome1 [Glycine max] Length = 681 Score = 181 bits (460), Expect = 2e-43, Method: Compositional matrix adjust. Identities = 147/484 (30%), Positives = 224/484 (46%), Gaps = 44/484 (9%) Query: 5 TAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYAS 64 + +VW R DLR+ DN AL A VI+VFI PE+ Q+ ++ S Sbjct: 2 SGGGCSIVWFRRDLRVEDNPALAAGVRA--GAVISVFIWAPEEEGQYYPGRVSRWWLKQS 59 Query: 65 LLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYE-INEVRRDKLL 123 L + SL G + +N SI L T+LF+N Y+ ++ VR + Sbjct: 60 LAHLDSSLRNLGSPLITKRSTN---SISSLLEVVKSTGATQLFFNHLYDPLSLVRDHRAK 116 Query: 124 EKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIR 183 E + +SF+ +L P + + Q + ++ F + + LP P Sbjct: 117 EVLTAQGITVRSFNSDLLYEPWDVNDAHGQPFTTFSAFWERCLSMPYDPQAPLLP-PKRI 175 Query: 184 LTG--PVTPSNIPRFFDYPFQAIDPMFP----IGEQNALHILRKFCKEKVYYYVEQRDIP 237 + G P PS+ F D +A + + G NA L F + Y + R Sbjct: 176 IPGDVPRCPSDTLVFEDELEKASNALLARAWSPGWSNADKALTAFVNGALIEYSKNRRKA 235 Query: 238 AIQGTSQLSPYLSIGVLSPRQCW--------------NRLKEEFVDLLIKPKSGAFSWLN 283 TS LSP+L G +S ++ + N+ EE V+L +K Sbjct: 236 DSATTSFLSPHLHFGEVSVKKVFHLVRIKQVFWANEGNKAGEESVNLFLK---------- 285 Query: 284 ELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQL 343 + RE+ R++ +P +P + + W + +AW+QG TG+P++DA MR+L Sbjct: 286 SIGLREYSRYISFNHP-YSHERPLLAHLKFFPWVVNEGYFKAWRQGRTGYPLVDAGMREL 344 Query: 344 NTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSV 403 GW+H+R+R++ +SF VK L + WR G +YF LLD DL S+ GWQ+ + T D Sbjct: 345 WATGWLHDRIRVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTLPDGR 404 Query: 404 PYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIH----APHSWLDKNDLSL--NYP 457 RI NP +G + DP G ++R WLPEL +PT++IH AP S L + L NYP Sbjct: 405 ELDRIDNPQFEGYKCDPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYP 464 Query: 458 LPIV 461 LPIV Sbjct: 465 LPIV 468 >gi|37725007|gb|AAO23970.1| cryptochrome 1 [Pisum sativum] gi|45935254|gb|AAS79662.1| cryptochrome 1 apoprotein [Pisum sativum] gi|45935256|gb|AAS79663.1| cryptochrome 1 apoprotein [Pisum sativum] Length = 682 Score = 181 bits (460), Expect = 2e-43, Method: Compositional matrix adjust. Identities = 146/490 (29%), Positives = 228/490 (46%), Gaps = 44/490 (8%) Query: 5 TAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYAS 64 ++ +VW R DLR+ DN AL A V+ VFI PE+ Q+ ++ S Sbjct: 2 SSGGCSIVWFRRDLRVEDNPALAAGVRA--GAVVGVFIWAPEEEGQYYPGRVSRWWLKNS 59 Query: 65 LLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYE-INEVRRDKLL 123 L Q+ SL G + + DSI L T++F+N Y+ ++ VR + Sbjct: 60 LSQLDSSLRNLGTPLVTKRST---DSISSLLEVVKSTGATQIFFNHLYDPLSLVRDHRAK 116 Query: 124 EKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIR 183 E + +S++ +L P + + Q + + F + + LP P Sbjct: 117 EILTAQGITVRSYNSDLLYEPWDVNDEHGQPFTTFDSFWERCLSMPYDPQAPLLP-PKRI 175 Query: 184 LTGPVT--PSNIPRFFDYPFQAIDPM----FPIGEQNALHILRKFCKEKVYYYVEQRDIP 237 + G V+ PS+ F D ++ + + + G NA L F + Y R Sbjct: 176 IPGDVSRCPSDTLVFEDELEKSSNALLARAWSPGWSNANKALTTFINGPLIEYSVNRRKA 235 Query: 238 AIQGTSQLSPYLSIGVLSPRQCW--------------NRLKEEFVDLLIKPKSGAFSWLN 283 TS LSP+L G +S ++ + N+ EE V+L +K Sbjct: 236 DSATTSFLSPHLHFGEVSVKKVFHLVRIKQVFWANEGNKAGEESVNLFLK---------- 285 Query: 284 ELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQL 343 + RE+ R++ +P +P + + W D +AW+QG TG+P++DA MR+L Sbjct: 286 SIGLREYSRYISFNHP-YSHERPLLGHLKFFPWVVDEGYFKAWRQGRTGYPLVDAGMREL 344 Query: 344 NTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSV 403 GW+H+R+R++ +SF VK L + WR G +YF LLD DL S+ GWQ+ + T D Sbjct: 345 WATGWLHDRIRVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTLPDGR 404 Query: 404 PYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIH----APHSWLDKNDLSL--NYP 457 + RI NP +G + DP G ++R WLPEL +PT++IH AP S L + L NYP Sbjct: 405 EFDRIDNPQFEGYKCDPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYP 464 Query: 458 LPIVDHKKAC 467 LPIV+ A Sbjct: 465 LPIVEIDAAT 474 >gi|302755656|ref|XP_002961252.1| hypothetical protein SELMODRAFT_75166 [Selaginella moellendorffii] gi|300172191|gb|EFJ38791.1| hypothetical protein SELMODRAFT_75166 [Selaginella moellendorffii] Length = 494 Score = 181 bits (460), Expect = 2e-43, Method: Compositional matrix adjust. Identities = 142/478 (29%), Positives = 226/478 (47%), Gaps = 30/478 (6%) Query: 8 SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67 S +VW R DLR+ DN AL AA + V+ +FI E+ + ++ SL+ Sbjct: 4 STTIVWFRRDLRVEDNPALAAA--SKAGAVVPLFIWCAEEEGEFRPGRVSRWWLKQSLMH 61 Query: 68 VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127 + SL++ G + S+ L + T++FYN Y+ + RD ++ L Sbjct: 62 LNSSLAKLGCPLLMQKSRG--SSLNALLQIARDTKATQVFYNHLYDPVSLIRDHHVKHGL 119 Query: 128 -QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 Q+ + ++F+ +L P + + Y + F + + + D LP RL+ Sbjct: 120 SQYGITVQTFNADLLYEPWELFDARGNPYTHFQLFWQRYLGMDHEPDGPLLP--PKRLSP 177 Query: 187 PVTPS----NIPR--------FFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQR 234 P P +P F + + G NA L F + Y + R Sbjct: 178 PAEPGLGHLGLPAEELGLEDDFEKSSNAMLARTWTPGWSNANKALDAFLAGPLADYGDNR 237 Query: 235 DIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEE----FVDLLIKPKSGAFSWLNELIWREF 290 TS LSP+L G LS R+ ++ ++ + D + A +L L +RE+ Sbjct: 238 GKVDGGTTSMLSPHLHYGELSIRKVFHAVRSKQLLWITDGRQPAERSASLFLRALGYREY 297 Query: 291 YRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMH 350 R+L +P + + W D +AW+QG TG+P++DA MR+L GW+H Sbjct: 298 SRYLCFHFP-FTHERSLLGHLRHFPWRVDEGFFKAWRQGRTGYPLVDAGMRELWATGWLH 356 Query: 351 NRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFN 410 NR+R+I +SF VK L + WR G +YF LLD DL S+ GWQ+ + + D R+ Sbjct: 357 NRIRVIVSSFCVKFLQLPWRWGMKYFWDTLLDADLESDILGWQYISGSLPDGHELDRMEI 416 Query: 411 PTIQGKRFDPQGTFIRHWLPELNNVPTQYIH----APHSWLDKN--DLSLNYPLPIVD 462 P ++G+RFDP G ++R WLPEL+ +PT++IH AP S L +L NYP P+V+ Sbjct: 417 PHVEGRRFDPDGNYVRKWLPELSRLPTEWIHEPWNAPPSVLCAAGIELGCNYPRPVVE 474 >gi|257058615|ref|YP_003136503.1| cryptochrome, DASH family [Cyanothece sp. PCC 8802] gi|256588781|gb|ACU99667.1| cryptochrome, DASH family [Cyanothece sp. PCC 8802] Length = 488 Score = 181 bits (460), Expect = 2e-43, Method: Compositional matrix adjust. Identities = 140/486 (28%), Positives = 242/486 (49%), Gaps = 49/486 (10%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGIS-----ARQSHFIYASL 65 L+W RNDLR+ D++ ++ A A++I + ++ +S F+ S+ Sbjct: 9 LIWYRNDLRLHDHQPMFQAVKKK-AQIIPFYCFDDRHFKTTSFGFPKTGNFRSQFLLQSI 67 Query: 66 LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125 ++K+L Q G + + + I + C + + ++++++ E++ + LEK Sbjct: 68 DNLRKNLQQLGSNLVIRR--GYPEKI--IPEICQELAIDAVYFHQEVTSEEIKVETALEK 123 Query: 126 RL-QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKAL-IQNLVQADLRSLPVPAIR 183 L Q V F + L P + ++ +++T FRK + ++L+ + + P P Sbjct: 124 ALTQMGVKLNPFWGTTLYHPDDLPFTLAEIPELFTNFRKQVEKKSLINS---TFPTPKKL 180 Query: 184 LTGP-VTPSNIPRFFDYPFQAID------PMFPIGEQNALHILRKFC--KEKVYYYVEQR 234 + P + NIP + + + F GE + L ++ K ++ Y E R Sbjct: 181 PSLPNLDLGNIPTLAELGLETPEFDSRGVLEFIGGESEGIKRLNQYFWQKNRLKDYKETR 240 Query: 235 D-IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWL-NELIWREFYR 292 + + +S+ SP+L++G LSPR + + + ++ + K+ + WL EL+WR+++R Sbjct: 241 NGMLGSDYSSKFSPWLALGCLSPRYIYEEVTKYELE---RVKNDSTYWLIFELLWRDYFR 297 Query: 293 HLMA------FYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTI 346 + A FY S G +PW E +W + Q W+ G TG+P++DA M +L Sbjct: 298 FICAKHGNKVFYSSGLQGFN-LPWKE--DWQR----FQLWQTGNTGYPLVDANMTELAAT 350 Query: 347 GWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYF 406 G+M NR R ASFL K+L ++W +G E+F S L+D D+ SN G W + A GND+ F Sbjct: 351 GFMSNRGRQNVASFLTKNLGINWLMGAEWFESVLIDYDVCSNYGNWNYTAGVGNDARG-F 409 Query: 407 RIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKN------DLSLNYPLPI 460 R FN Q K +DP+G ++RHWLPEL +P IH P +L ++YP PI Sbjct: 410 RYFNIPKQSKDYDPKGNYLRHWLPELKTIPGDKIHEPWKLSQAEQKQYRVNLGVDYPRPI 469 Query: 461 VDHKKA 466 VD K+ Sbjct: 470 VDFFKS 475 >gi|167563424|ref|ZP_02356340.1| deoxyribodipyrimidine photolyase [Burkholderia oklahomensis EO147] Length = 254 Score = 181 bits (460), Expect = 2e-43, Method: Compositional matrix adjust. Identities = 104/258 (40%), Positives = 139/258 (53%), Gaps = 13/258 (5%) Query: 230 YVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWRE 289 Y RD P TS+LSP++ G LS RQ W+ + ++ ++ EL WRE Sbjct: 1 YATGRDRPGAASTSRLSPFVRFGNLSVRQVWHAAVDAHAHGAAT-QADLDTFCRELGWRE 59 Query: 290 FYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWM 349 F + +P + + + + W D L AW++G TG+P++DA MR+L GWM Sbjct: 60 FCYGQLYRFPDLAR-RNLRHNLDGMPWRDDPAALAAWRRGATGYPLVDAGMRELWATGWM 118 Query: 350 HNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIF 409 HNR RM+ ASFLVK LL+DWR G+ +F L+D D ASN WQW A G D+ PYFRIF Sbjct: 119 HNRARMVCASFLVKHLLIDWREGDAWFWDTLVDADAASNAANWQWVAGCGADAAPYFRIF 178 Query: 410 NPTIQGKRFDPQGTFIRHWLPELNNVPTQ-YIHAPHSWLDKND--------LSLNYPLPI 460 NP QGK+FDP G ++R W+PEL +P IH P W L YPLPI Sbjct: 179 NPIAQGKKFDPDGAYVRRWVPELAGLPANAAIHEP--WAAPAARLAAAGVRLGDTYPLPI 236 Query: 461 VDHKKACHHTLNQYYAAK 478 V H A L+ + + Sbjct: 237 VAHDAARKRALDAWVTVR 254 >gi|124361190|gb|ABN09162.1| Deoxyribodipyrimidine photolyase, class 1 [Medicago truncatula] Length = 679 Score = 181 bits (460), Expect = 2e-43, Method: Compositional matrix adjust. Identities = 145/492 (29%), Positives = 227/492 (46%), Gaps = 44/492 (8%) Query: 3 ATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIY 62 +++ +VW R DLR+ DN AL A V+ VFI PE+ Q+ ++ Sbjct: 2 SSSGGGCSIVWFRRDLRVEDNPALAAGVRA--GAVVGVFIWAPEEEGQYYPGRVSRWWLK 59 Query: 63 ASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYE-INEVRRDK 121 SL + SL G + + DS+ L T++F+N Y+ ++ VR + Sbjct: 60 NSLAHLDSSLRNLGTPLVTKRST---DSVSSLLEVVKSTGATQIFFNHLYDPLSLVRDHR 116 Query: 122 LLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPA 181 E + +SF+ +L P + + Q + + F + + LP P Sbjct: 117 AKEILTAQGITVRSFNSDLLYEPWDVNDENGQPFTTFDSFWERCLSMPYDPQAPLLP-PK 175 Query: 182 IRLTGPVT--PSNIPRFFDYPFQAIDPMFP----IGEQNALHILRKFCKEKVYYYVEQRD 235 + G V+ PS+ F D +A + + G NA L F + Y + R Sbjct: 176 RIIPGDVSKCPSDTLVFEDDLEKASNALLARAWSPGWSNANKALTTFINGPLIEYSKNRR 235 Query: 236 IPAIQGTSQLSPYLSIGVLSPRQCW--------------NRLKEEFVDLLIKPKSGAFSW 281 TS LSP+L G +S ++ + N EE V+L +K Sbjct: 236 KADSATTSFLSPHLHFGEVSVKKVFHLVRIKQVFWANEGNEAGEESVNLFLK-------- 287 Query: 282 LNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMR 341 + RE+ R++ +P +P + + W + +AW+QG TG+P++DA MR Sbjct: 288 --SIGLREYSRYISFNHP-YSHERPLLGHLKFFPWVVNEGYFKAWRQGRTGYPLVDAGMR 344 Query: 342 QLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGND 401 +L GW+H+R+R++ +SF VK L + WR G +YF LLD DL S+ GWQ+ + T D Sbjct: 345 ELWATGWLHDRIRVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTLPD 404 Query: 402 SVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIH----APHSWLDKNDLSL--N 455 + RI NP +G + DP G ++R WLPEL +PT++IH AP S L + L N Sbjct: 405 GREFDRIDNPQFEGYKCDPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSN 464 Query: 456 YPLPIVDHKKAC 467 YPLPIV+ A Sbjct: 465 YPLPIVEIDAAT 476 >gi|302772136|ref|XP_002969486.1| hypothetical protein SELMODRAFT_91442 [Selaginella moellendorffii] gi|300162962|gb|EFJ29574.1| hypothetical protein SELMODRAFT_91442 [Selaginella moellendorffii] Length = 494 Score = 181 bits (460), Expect = 2e-43, Method: Compositional matrix adjust. Identities = 143/478 (29%), Positives = 226/478 (47%), Gaps = 30/478 (6%) Query: 8 SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67 S +VW R DLR+ DN AL AA + V+ +FI E+ + ++ SL+ Sbjct: 4 STTIVWFRRDLRVEDNPALAAA--SKAGAVVPLFIWCAEEEGEFRPGRVSRWWLKQSLMH 61 Query: 68 VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127 + SL++ G + S+ L + T++FYN Y+ + RD ++ L Sbjct: 62 LNSSLTKLGCPLLMQKSRG--SSLNALLQIARDTKATQVFYNHLYDPVSLIRDHHVKHGL 119 Query: 128 -QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 Q+ + ++F+ +L P + + Y + F + + + D LP RL+ Sbjct: 120 SQYGITVQTFNADLLYEPWELFDARGNPYTHFQLFWQRYLGMDHEPDGPLLP--PKRLSP 177 Query: 187 PVTPS----NIPR--------FFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQR 234 P P +P F + + G NA L F + Y + R Sbjct: 178 PAEPGLGHLGLPAEELGLEDDFEKSSNAMLARTWTPGWSNANKSLDAFLAGPLADYGDNR 237 Query: 235 DIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEE----FVDLLIKPKSGAFSWLNELIWREF 290 TS LSP+L G LS R+ ++ ++ + D + A +L L +RE+ Sbjct: 238 GKVDGGTTSMLSPHLHYGELSIRKVFHAVRSKQLLWITDGRQPAERSASLFLRALGYREY 297 Query: 291 YRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMH 350 R+L +P + + W D +AW+QG TG+P++DA MR+L GW+H Sbjct: 298 SRYLCFHFP-FTHERSLLGHLRHFPWRVDEGFFKAWRQGRTGYPLVDAGMRELWATGWLH 356 Query: 351 NRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFN 410 NR+R+I +SF VK L + WR G +YF LLD DL S+ GWQ+ + + D R+ Sbjct: 357 NRIRVIVSSFCVKFLQLPWRWGMKYFWDTLLDADLESDILGWQYISGSLPDGHELDRMEI 416 Query: 411 PTIQGKRFDPQGTFIRHWLPELNNVPTQYIH----APHSWLDKN--DLSLNYPLPIVD 462 P I+G+RFDP G ++R WLPEL+ +PT++IH AP S L +L NYP P+V+ Sbjct: 417 PHIEGRRFDPDGNYVRKWLPELSRLPTEWIHEPWNAPPSVLCAAGIELGCNYPRPVVE 474 >gi|326493172|dbj|BAJ85047.1| predicted protein [Hordeum vulgare subsp. vulgare] gi|326496489|dbj|BAJ94706.1| predicted protein [Hordeum vulgare subsp. vulgare] Length = 656 Score = 181 bits (458), Expect = 3e-43, Method: Compositional matrix adjust. Identities = 140/473 (29%), Positives = 227/473 (47%), Gaps = 28/473 (5%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 +VW R DLRI DN AL AA D V+ VFI P + + ++ SL + K Sbjct: 8 VVWFRKDLRIDDNPALAAAAR--DGAVLPVFIWCPAEEGRFYPGRCSRWWLKESLAHLAK 65 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQ-RVTKLFYNRQYE-INEVRRDKLLEKRLQ 128 SL G + D++ C+ R T++ YN Y+ I+ VR DK+ + L Sbjct: 66 SLEALGCPLVLIRAQTTLDAL----LQCVHSIRATRVVYNHLYDPISLVRDDKIKNELLG 121 Query: 129 HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQ-----ADLRSLPVPAIR 183 + +SF+ +L P I + + + + + ++ ++ A R +PV I Sbjct: 122 LGISMQSFNGDLLYEPWEIYDENGLAFTTFNMYWEKCMELPIEISPSLAPWRLVPVSGIE 181 Query: 184 LTGPVTPSNIPRFFDYPFQAIDPMFP----IGEQNALHILRKFCKEKVYYYVEQRDIPAI 239 + N+ ++ + + G +NA L F + Y + A Sbjct: 182 NLCTSSIDNLGLESSKDEESSNALLSRAWSPGWRNAEKTLEDFVCHGLLDYSKDGMKVAG 241 Query: 240 QGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLN----ELIWREFYRHLM 295 TS LSPYL G +S R+ + ++ + + + S A +N + RE+ R+L Sbjct: 242 TTTSLLSPYLHYGEVSVRKIYQLVRMQQIKCGNEGNSEAGESVNLFLRSIGLREYSRYLC 301 Query: 296 AFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRM 355 +P + + + W D ++W+QG TG+P++DA MR+L GW HNR+R+ Sbjct: 302 FNFP-FTHERSLLGNLKHYPWRADEDRFKSWRQGMTGYPLVDAGMRELWATGWTHNRIRV 360 Query: 356 ITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQG 415 I +SF VK LL+ W G +YF LLD D+ S+ GWQ+ + D R+ NP +QG Sbjct: 361 IVSSFAVKFLLIPWTWGMKYFWDVLLDADIESDILGWQYISGCLPDGHELGRLDNPEVQG 420 Query: 416 KRFDPQGTFIRHWLPELNNVPTQYIH----APHSWLD--KNDLSLNYPLPIVD 462 +++DP G ++R W+PEL +P ++IH AP S L+ +L NYP+PIV+ Sbjct: 421 QKYDPDGEYVRTWIPELARMPGEWIHHPWDAPSSILEVAGVELGFNYPMPIVE 473 >gi|172039222|ref|YP_001805723.1| DNA photolyase [Cyanothece sp. ATCC 51142] gi|171700676|gb|ACB53657.1| DNA photolyase [Cyanothece sp. ATCC 51142] Length = 491 Score = 181 bits (458), Expect = 4e-43, Method: Compositional matrix adjust. Identities = 146/506 (28%), Positives = 245/506 (48%), Gaps = 63/506 (12%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWR--QHGISAR---QSHFIYASL 65 L+W RNDLRI D++ +Y A A +I ++ Q++ +G + F+ S+ Sbjct: 12 LIWYRNDLRIHDHEPMYQAIKEG-ALIIPLYCFDIRQFKTTSYGFPKTGNFRGQFLLESV 70 Query: 66 LQVQKSLSQKG---IVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKL 122 +++SL G IV + + + I+ L+ + ++++ + E +K Sbjct: 71 ANLRQSLQDLGSNLIVRKGYPEKIIPELIKELE-------IDAVYFHEEVTSEETTVEKE 123 Query: 123 LEKRLQH-RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKAL-----IQNLVQADLRS 176 +++ L+ +V + F S L + Q+ +V+T FRK + + + ++ Sbjct: 124 VKQALKPLKVKVQGFWGSTLYHWDDLPFEVNQLPEVFTSFRKKVEKSSTVNPTLITPIKL 183 Query: 177 LPVPAIRLTGPVTPSNIPRFFDYPFQAIDPM------FPIGEQNALHILRKFCKEK--VY 228 LP P I L IP + + D F GE + L+++ E+ + Sbjct: 184 LPFPNIEL------GKIPTLEELGLEKPDYHSRGMLNFKGGETGGIKRLKEYFWERNCLK 237 Query: 229 YYVEQRD-IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIW 287 Y E R+ + +S+ SP+L+ G LSPR + + +++ D +K S + + EL+W Sbjct: 238 EYKETRNGMLGADYSSKFSPWLAQGCLSPRYIYEEV-QKYEDARVKNNS-TYWLIFELLW 295 Query: 288 REFYRHLMA------FYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMR 341 R+++R + A FY S G IPW E D + W++ TG+P++DA MR Sbjct: 296 RDYFRFICAKHGNKIFYESGLQGLD-IPWKE------DKERFKLWQESKTGYPLVDANMR 348 Query: 342 QLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGND 401 ++ G+M NR R ASFL K+L ++W +G E+F S L+D D+ SN G W + A GND Sbjct: 349 EIAATGFMSNRGRQNVASFLTKNLGINWIMGAEWFESLLIDYDVCSNYGNWNYTAGVGND 408 Query: 402 SVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND--------LS 453 + FR FN Q K +DP+G ++RHWLPEL +P IH P W D + Sbjct: 409 ARG-FRYFNIPKQSKDYDPKGDYLRHWLPELKMIPGDKIHEP--WKLSQDEQKRYNVRIG 465 Query: 454 LNYPLPIVDHKKACHHTLNQYYAAKK 479 ++YP P+VD K+ Y +A K Sbjct: 466 VDYPRPVVDFFKSVKANEKVYNSATK 491 >gi|323352252|gb|EGA84789.1| Phr1p [Saccharomyces cerevisiae VL3] Length = 406 Score = 180 bits (457), Expect = 4e-43, Method: Compositional matrix adjust. Identities = 121/395 (30%), Positives = 194/395 (49%), Gaps = 37/395 (9%) Query: 13 WLRNDLRITDNKALYAAC--------HNSDAKVIAVFIATPEQWRQHGISARQSHFIYAS 64 W RNDLR+ DN LY + N+ AK+ AV++ + WR H S + FI + Sbjct: 3 WFRNDLRLYDNVGLYKSVALFQQLRQKNAKAKLYAVYVINEDDWRAHMDSGWKLMFIMGA 62 Query: 65 LLQVQKSLSQKGI---VFQYHQ----CSNFDDSIEWLDSYCLQQRV---TKLFYNRQYEI 114 L +Q+SL++ I ++++H SN + +E+ C+ T + N +Y+ Sbjct: 63 LKNLQQSLAELHIPLLLWEFHTPKSTLSNSKEFVEFFKEKCMNVSSGTGTIITANIEYQT 122 Query: 115 NEVRRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADL 174 +E+ RD L + HR+ K + DS ++ PG I Y V+TP+ K + + Sbjct: 123 DELYRDIRLLENEDHRLQLKYYHDSCIVAPGLITTDRGTNYSVFTPWYKKWVLYVNNYKK 182 Query: 175 RSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDP-------------MFPIGEQNALHILRK 221 + + + + P+ + F PFQ P + + E+ AL L+ Sbjct: 183 STSEICHLHIIEPLKYNET--FELKPFQYSLPDEFLQYIPKSKWCLPDVSEEAALSRLKD 240 Query: 222 FCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPR----QCWNRLKEEFVDLLIKPKSG 277 F K Y ++D+ + GTS LS Y++ G +S R Q + + + +K S Sbjct: 241 FLGTKSSKYNNEKDMLYLGGTSGLSVYITTGRISTRLIVNQAFQSCNGQIMSKALKDNSS 300 Query: 278 AFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIID 337 +++ E+ WR+FYRH M +P MG P+ T I+W + + W G TG PI+D Sbjct: 301 TQNFIKEVAWRDFYRHCMCNWPYTSMGMPYRLDTLDIKWENNPVAFEKWCTGNTGIPIVD 360 Query: 338 AAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIG 372 A MR+L G+++NR RMITASFL K+LL+DWR G Sbjct: 361 AIMRKLLYTGYINNRSRMITASFLSKNLLIDWRWG 395 >gi|89199716|gb|ABD63261.1| cryptochrome 1 [Glycine max] gi|261876445|dbj|BAI47548.1| cryptochrome1 [Glycine max] Length = 681 Score = 180 bits (457), Expect = 4e-43, Method: Compositional matrix adjust. Identities = 144/478 (30%), Positives = 224/478 (46%), Gaps = 44/478 (9%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 +VW R DLRI DN AL A V+AVF+ PE+ Q+ ++ SL + Sbjct: 8 IVWFRRDLRIEDNPALTAGVRA--GAVVAVFVWAPEEEGQYYPGRVSRWWLKNSLAHLHS 65 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYE-INEVRRDKLLEKRLQH 129 SL G + + D++ L T+LF+N Y+ ++ VR + E Sbjct: 66 SLRNLGTPLITKRST---DTLSSLLEVVKSTGATQLFFNHLYDPLSLVRDHRAKEVLTAQ 122 Query: 130 RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189 + +SF+ +L P + + + + + F + + + LP P + G + Sbjct: 123 GITVRSFNADLLYEPWEVNDAHGRPFTTFAAFWERCLSMPYDPESPLLP-PKRIIPGDAS 181 Query: 190 --PSNIPRFFDYPFQAIDPMFP----IGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS 243 PS+ F D +A + + G NA L F + Y + R TS Sbjct: 182 RCPSDTLLFEDELEKASNALLARAWSPGWSNANKALTTFINGPLIEYSKNRRKADSATTS 241 Query: 244 QLSPYLSIGVLSPRQCW--------------NRLKEEFVDLLIKPKSGAFSWLNELIWRE 289 LSP+L G LS ++ + N+ EE V+L +K + RE Sbjct: 242 LLSPHLHFGELSVKKVFHLVRIKQVLWANEGNKAGEESVNLFLK----------SIGLRE 291 Query: 290 FYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWM 349 + R++ +P +P + + W + +AW+QG TG+P++DA MR+L GW+ Sbjct: 292 YSRYISFNHP-YSHERPLLGHLKFFPWVVNEGYFKAWRQGRTGYPLVDAGMRELWATGWL 350 Query: 350 HNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIF 409 H+R+R++ +SF VK L + WR G +YF LLD DL S+ GWQ+ + + D RI Sbjct: 351 HDRIRVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGSLPDGREIDRID 410 Query: 410 NPTIQGKRFDPQGTFIRHWLPELNNVPTQYIH----APHSWLDKNDLSL--NYPLPIV 461 NP +G +FDP G ++R WLPEL +PT++IH AP S L + L NYPLPIV Sbjct: 411 NPQFEGYKFDPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPLPIV 468 >gi|310816072|ref|YP_003964036.1| deoxyribodipyrimidine photolyase [Ketogulonicigenium vulgare Y25] gi|308754807|gb|ADO42736.1| deoxyribodipyrimidine photolyase [Ketogulonicigenium vulgare Y25] Length = 478 Score = 180 bits (456), Expect = 5e-43, Method: Compositional matrix adjust. Identities = 141/480 (29%), Positives = 213/480 (44%), Gaps = 63/480 (13%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISA-RQSHFIYASLLQVQ 69 L WL D R DN AL AAC +D ++AVF Q S R + A ++ Sbjct: 6 LFWLSRDFRFADNPALAAAC--TDGPLLAVFCVDDLLMSQGAASRWRLEQALRAFDAALR 63 Query: 70 KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVR--RDKLLEKRL 127 K +G++ + ++ +Q + + + +R +D+L Sbjct: 64 KRTGGRGVLVLRGEPDRILPAL-------VQNTGAQRIHQSDWPTAGMRAVQDRLRAALA 116 Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187 + +L P + + A Y+VYTPF +AL Q+ R P R+T Sbjct: 117 PLGAGLELHGGHLLAHPAMLRSGAGTPYRVYTPFARALRQHGADRPGRDAPA---RIT-- 171 Query: 188 VTPSNIPRFFDYPFQAIDPM-----------------FPIGEQNALHILRKFCKEKVYYY 230 P D+ AI+ + P G Q A L F ++ Y Sbjct: 172 ------PCADDHQGLAIETLDLAPDMHRGRALLAKFALPAGAQQAEARLDTFL-DQAAVY 224 Query: 231 VEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLK-EEFVDLLIKPKSGAFSWLNELIWRE 289 RD P TS LS +L++G +SPR+ W + + P G +L+E+IWRE Sbjct: 225 PAGRDHPDQPATSNLSEHLALGEISPRRIWAIASLRAAAEPALAP--GITKFLSEVIWRE 282 Query: 290 FYRHLMAFYPSVCMGKPFIPWTEK---IEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTI 346 F HL+ P + P PW ++ W + + L W+Q TG ++DA +R++ Sbjct: 283 FSWHLLIANPDL----PTQPWRQEWSEFPWQQRTSALSRWEQAATGISLVDAGLREMRVT 338 Query: 347 GWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYF 406 G MHNR+RM+ AS+L K ++ DWR+G ++F L D D A+N WQW A G D+ PYF Sbjct: 339 GRMHNRVRMVVASWLTKHMMTDWRLGLQHFADSLTDWDPAANAMNWQWVAGCGPDASPYF 398 Query: 407 RIFNPTIQGKRFDPQGTFIRHWL--------PEL----NNVPTQYIHAPHSWLDKNDLSL 454 RIFNP Q + FD +G + R WL PE +++PT + A H D +D L Sbjct: 399 RIFNPVKQAEEFDKKGIYRRKWLAGFDGSAAPEAIAYHDSLPTDWHVARHWREDASDERL 458 >gi|225024820|ref|ZP_03714012.1| hypothetical protein EIKCOROL_01707 [Eikenella corrodens ATCC 23834] gi|224942423|gb|EEG23632.1| hypothetical protein EIKCOROL_01707 [Eikenella corrodens ATCC 23834] Length = 438 Score = 180 bits (456), Expect = 6e-43, Method: Compositional matrix adjust. Identities = 142/462 (30%), Positives = 212/462 (45%), Gaps = 40/462 (8%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHG-ISARQSHFIYASLLQVQ 69 LVW R DLR D AL AA S ++ +++ W G ++AR+ +FI+ SL +Q Sbjct: 7 LVWFRQDLRTDDQPALQAAA-RSGRPLLGLYV-----WPNEGMLTARRRYFIWQSLRDLQ 60 Query: 70 KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH 129 L++ GI + + +E ++C R ++ R +LEK+ Sbjct: 61 ARLAECGIPLHVREGNPVQAVVE-TAAHC---RAAEVVCASDGAGQGALR-AVLEKQ--- 112 Query: 130 RVICK--SFDDSVLLPPGSILNHALQMYKVYTPFR----KALIQNLVQADLRSLPVPAIR 183 C+ S D +L PP + + F+ A ++ + P P + Sbjct: 113 --GCRLHSVADGLLQPPFQFIRAPYFNEPAFAAFQVAWQAACVEQYAAWQASAWPPPDLA 170 Query: 184 LTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS 243 P N+ P GE A L +F YY V R +PA G+S Sbjct: 171 AQQQRLPENLKTAGLPVVPRAVLTIPGGETAARRQLAEFLPRLPYYPV-LRSLPAQHGSS 229 Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCM 303 QLSP+L G LS R+ W A +W L REF+RH YP V Sbjct: 230 QLSPHLVFGTLSVRRAWAAASN---------TPDAAAWQEALARREFWRHYFRQYPDVL- 279 Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363 + +P + + LL AW+QG TG+P+ DAAMR L GW+ + LR A+F + Sbjct: 280 -RQDLP-EHRAAGQANQTLLAAWQQGITGYPLADAAMRLLRDTGWLPHSLRRFCAAFFCR 337 Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423 L W+ G +F QLLD + A+N+G WQ AA G V + FNP + ++ DP G Sbjct: 338 VLGGRWQDGAGWFARQLLDFEPAANSGNWQLAAGLGGKQVER-QPFNPVVWSQKLDPDGQ 396 Query: 424 FIRHWLPELNNVPTQYIHAPHSWLDKNDLSLN-YPLPIVDHK 464 FIR LP+L ++ ++ IHAP WL +++ N YP P+VD++ Sbjct: 397 FIRRHLPQLAHLDSRRIHAP--WLAAAEVNTNGYPAPVVDYR 436 >gi|259019315|gb|ACV89993.1| CRY1 [Fragaria vesca] Length = 673 Score = 179 bits (455), Expect = 6e-43, Method: Compositional matrix adjust. Identities = 146/493 (29%), Positives = 230/493 (46%), Gaps = 46/493 (9%) Query: 1 MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHF 60 M + SV VW R DLR+ DN AL A V+A+FI PE+ + + Sbjct: 1 MSGGSGCSV--VWFRRDLRVEDNPALLAGVRA--GGVVALFIWAPEEEGPYYPGRVSRWW 56 Query: 61 IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYE-INEVRR 119 + SL + SL G + + DS+ L CL T+LF+N Y+ I+ VR Sbjct: 57 LKHSLAHLDSSLRSLGTPLITKKST---DSVSSLLEVCLATGATQLFFNHLYDPISLVRD 113 Query: 120 DKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPV 179 + E + + +SF+ +L P + + + + + F + + + LP Sbjct: 114 HRAKEVLSANGITVRSFNADLLYEPWDVNDVHGRPFTTFDAFWERCLSMPFDPEAPLLP- 172 Query: 180 PAIRLTGPVT--PSNIPRFFDYPFQAIDPMFP----IGEQNALHILRKFCKEKVYYYVEQ 233 P ++G + P + F D + + + G +A + F + Y Sbjct: 173 PKRIISGDASRCPPDTLVFEDESEKGSNALLARAWSPGWSSADKAVTTFINGPLIEYSTN 232 Query: 234 RDIPAIQGTSQLSPYLSIGVLSPRQCW--------------NRLKEEFVDLLIKPKSGAF 279 R TS LSP+L G +S R+ + N+ EE V+L +K Sbjct: 233 RRKADSNTTSLLSPHLHFGEVSVRKVFHLIRIKQLLWANEGNKAGEESVNLFLK------ 286 Query: 280 SWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAA 339 + RE+ R++ +P +P + + W + + +AW+QG TG+P++DA Sbjct: 287 ----SIGLREYSRYISFNHP-YSHERPLLGHLKFFPWVINQNYFKAWRQGRTGYPLVDAG 341 Query: 340 MRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTG 399 MR+L GW+H+R+R++ +SF VK L + WR G +YF LLD DL S+ GWQ+ + T Sbjct: 342 MRELWATGWLHDRIRVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTI 401 Query: 400 NDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIH----APHSWLDKNDLSL- 454 D + RI NP +G + DP G ++R WLPEL+ +PT +IH AP S L + L Sbjct: 402 PDGREFDRIDNPQFEGYKCDPHGEYVRRWLPELSRLPTDWIHHPWNAPESVLQAAGIELG 461 Query: 455 -NYPLPIVDHKKA 466 NYPLPIV + A Sbjct: 462 SNYPLPIVGIEAA 474 >gi|37520404|ref|NP_923781.1| cryptochrome [Gloeobacter violaceus PCC 7421] gi|81834455|sp|Q7NMD1|CRYD_GLOVI RecName: Full=Cryptochrome DASH gi|35211397|dbj|BAC88776.1| phrA [Gloeobacter violaceus PCC 7421] Length = 500 Score = 179 bits (455), Expect = 7e-43, Method: Compositional matrix adjust. Identities = 139/483 (28%), Positives = 235/483 (48%), Gaps = 51/483 (10%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQS-----HFIYASL 65 LVW RNDLR+ D++ L +A H +A+V+A++ P Q+ + ++ F+ S+ Sbjct: 7 LVWYRNDLRVHDHEPLTSALHK-NARVVALYCFDPRQFGKAPFGFEKTGPFRARFLLESV 65 Query: 66 LQVQKSLSQKG---IVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKL 122 +++SL Q G +V + H E + + + + + Y+ + E+ ++ Sbjct: 66 ADLRRSLRQLGSDLLVRRGHPE-------EVIPALVSELEIAAVHYHGEVTSEELVVERD 118 Query: 123 LEKRLQH-RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPA 181 L+ L V +SF + L+ P + + +++T FRK ++ + Sbjct: 119 LQAALAPLNVPVRSFWGTTLVHPDDLPFAIEAIPELFTDFRKQ-VERSAAINPPLPAPAK 177 Query: 182 IRLTGPVTPSNIPRFFDYPFQA--IDP----MFPIGEQNALHILRKFCKEKVY---YYVE 232 + V P IP+ D ++ D F GE + L L ++ +K Y Sbjct: 178 LPPLPAVDPGEIPQLADLGLESPVTDERAVLQFKGGETSGLARLEEYFWQKSLLKSYKQT 237 Query: 233 QRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWL-NELIWREFY 291 + + +S+ S +L++G LS R +++ + K+ + WL EL+WR+++ Sbjct: 238 RNGMLGADYSSKFSAWLALGCLSARYIHEQVQTYETKRI---KNDSTYWLIFELLWRDYF 294 Query: 292 RHLMA------FYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNT 345 R + A FY + G IPW E +W + + W+ G TGFP++DA MR+L Sbjct: 295 RFIAAKHGDRLFYTAGLRGLD-IPWKE--DWER----FELWRTGQTGFPLVDANMRELAA 347 Query: 346 IGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPY 405 G+M NR R ASFL K+L + W +G E+F S+L+D D+ASN G W + A GND+ Sbjct: 348 TGFMSNRGRQNVASFLTKNLGIHWHMGAEWFESRLIDYDVASNWGNWNYTAGVGNDARG- 406 Query: 406 FRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND------LSLNYPLP 459 FR FN Q + +DP G +++HWLPEL +P +H P L L ++YP P Sbjct: 407 FRFFNILKQARDYDPDGAYVKHWLPELAGLPPARVHEPWKLLPVEQKRFGVRLGVDYPQP 466 Query: 460 IVD 462 +VD Sbjct: 467 VVD 469 >gi|161779368|gb|ABX79355.1| cryptochrome 1 [Vitis vinifera] Length = 681 Score = 179 bits (454), Expect = 8e-43, Method: Compositional matrix adjust. Identities = 147/485 (30%), Positives = 219/485 (45%), Gaps = 44/485 (9%) Query: 5 TAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYAS 64 + +VW R DLR+ DN AL A VI VFI PE+ + ++ S Sbjct: 2 SGGGCSIVWFRRDLRVEDNPALAAGVRA--GAVIPVFIWAPEEEGPYYPGRVSRWWLKQS 59 Query: 65 LLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYE-INEVRRDKLL 123 L + SL G + + D I L T LF+N Y+ ++ VR + Sbjct: 60 LAHLDSSLRSLGTPLITKRST---DCISSLLEIVKSTGATLLFFNHLYDPLSLVRDHRAK 116 Query: 124 EKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIR 183 E + SF+ +L P + + + ++ F + + LP I Sbjct: 117 EALTAQGIAVHSFNADLLYEPWDVNDAQGHSFTTFSAFWDRCLSMPYDPEAPLLPPKRIN 176 Query: 184 LTGPVT--PSNIPRFFDYPFQAIDPMFP----IGEQNALHILRKFCKEKVYYYVEQRDIP 237 G V+ PS+ F D + + + G NA L F + Y + Sbjct: 177 -PGDVSRCPSDTIAFEDESEKGSNALLARAWTPGWSNADKALTIFINGPLIEYSKNSRKA 235 Query: 238 AIQGTSQLSPYLSIGVLSPRQCW--------------NRLKEEFVDLLIKPKSGAFSWLN 283 TS LSP+L G +S R+ + N+ EE V+L +K Sbjct: 236 DSATTSFLSPHLHFGEVSVRKVFHLVRIKQVLWANEGNKAGEESVNLFLK---------- 285 Query: 284 ELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQL 343 + RE+ R+L +P +P + + W D +AW+QG TG+P++DA MR+L Sbjct: 286 SIGLREYSRYLSFNHP-YSHERPLLGHLKFFPWVVDEGYFKAWRQGRTGYPLVDAGMREL 344 Query: 344 NTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSV 403 GWMH+R+R++ +SF VK L + WR G +YF LLD DL S+ GWQ+ + T D Sbjct: 345 WATGWMHDRIRVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTLPDGR 404 Query: 404 PYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIH----APHSWLDKNDLSL--NYP 457 + RI NP +G +FDP G ++R WLPEL +PT++IH AP S L + L NYP Sbjct: 405 EFDRIDNPQFEGYKFDPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYP 464 Query: 458 LPIVD 462 LPIV+ Sbjct: 465 LPIVE 469 >gi|261876451|dbj|BAI47551.1| cryptochrome1 [Glycine max] gi|261876453|dbj|BAI47552.1| cryptochrome1 [Glycine max] Length = 681 Score = 179 bits (454), Expect = 1e-42, Method: Compositional matrix adjust. Identities = 146/484 (30%), Positives = 223/484 (46%), Gaps = 44/484 (9%) Query: 5 TAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYAS 64 + +VW R DLR+ DN AL A V+ VFI PE+ Q+ ++ S Sbjct: 2 SGGGCSIVWFRRDLRVEDNPALAAGVRA--GAVVCVFIWAPEEEGQYYPGRVSRWWLKQS 59 Query: 65 LLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYE-INEVRRDKLL 123 L + L G + +N SI L T+LF+N Y+ ++ VR K Sbjct: 60 LAHLDSYLRNLGSPLITKRSTN---SISSLLEVVKSTGATQLFFNHLYDPLSLVRDHKAK 116 Query: 124 EKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIR 183 E + +SF+ +L P + + Q + ++ F + + LP P Sbjct: 117 EVLTAQGITVRSFNSDLLYEPWDVNDAHGQPFTTFSAFWERCLSMPYDPQAPLLP-PKRI 175 Query: 184 LTGPVT--PSNIPRFFDYPFQAIDPMFP----IGEQNALHILRKFCKEKVYYYVEQRDIP 237 + G V+ PS+ F D +A + + G NA L F + Y + R Sbjct: 176 IPGDVSRCPSDTLVFEDESEKASNALLARAWSPGWSNADKALAAFVNGALIEYSKNRRKA 235 Query: 238 AIQGTSQLSPYLSIGVLSPRQCW--------------NRLKEEFVDLLIKPKSGAFSWLN 283 TS LSP+L G +S ++ + N+ EE V+L +K Sbjct: 236 DSATTSFLSPHLHFGEVSVKKVFHLVRIKQVFWANEGNKAGEESVNLFLK---------- 285 Query: 284 ELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQL 343 + RE+ R++ +P +P + + W + +AW+QG TG+P++DA MR+L Sbjct: 286 SIGLREYSRYISFNHP-YSHERPLLGHLKFFPWVVNEGYFKAWRQGRTGYPLVDAGMREL 344 Query: 344 NTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSV 403 GW+H+R+R++ +SF VK L + WR G +YF LLD DL S+ GWQ+ + T D Sbjct: 345 WATGWLHDRIRVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTLPDGR 404 Query: 404 PYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIH----APHSWLDKNDLSL--NYP 457 + RI NP G + DP G ++R WLPEL +PT++IH AP S L + L NYP Sbjct: 405 EFDRIDNPQFVGYKCDPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYP 464 Query: 458 LPIV 461 LPIV Sbjct: 465 LPIV 468 >gi|302141959|emb|CBI19162.3| unnamed protein product [Vitis vinifera] Length = 691 Score = 179 bits (453), Expect = 1e-42, Method: Compositional matrix adjust. Identities = 146/485 (30%), Positives = 219/485 (45%), Gaps = 44/485 (9%) Query: 5 TAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYAS 64 + +VW R DLR+ DN AL A VI VFI PE+ + ++ S Sbjct: 2 SGGGCSIVWFRRDLRVEDNPALAAGVRA--GAVIPVFIWAPEEEGPYYPGRVSRWWLKQS 59 Query: 65 LLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYE-INEVRRDKLL 123 L + SL G + + D + L T LF+N Y+ ++ VR + Sbjct: 60 LAHLDSSLRSLGTPLITKRST---DCVSSLLEIVKSTGATLLFFNHLYDPLSLVRDHRAK 116 Query: 124 EKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIR 183 E + SF+ +L P + + + ++ F + + LP I Sbjct: 117 EALTAQGIAVHSFNADLLYEPWDVNDAQGHSFTTFSAFWDRCLSMPYDPEAPLLPPKRIN 176 Query: 184 LTGPVT--PSNIPRFFDYPFQAIDPMFP----IGEQNALHILRKFCKEKVYYYVEQRDIP 237 G V+ PS+ F D + + + G NA L F + Y + Sbjct: 177 -PGDVSRCPSDTIAFEDESEKGSNALLARAWTPGWSNADKALTIFINGPLIEYSKNSRKA 235 Query: 238 AIQGTSQLSPYLSIGVLSPRQCW--------------NRLKEEFVDLLIKPKSGAFSWLN 283 TS LSP+L G +S R+ + N+ EE V+L +K Sbjct: 236 DSATTSFLSPHLHFGEVSVRKVFHLVRIKQVLWANEGNKAGEESVNLFLK---------- 285 Query: 284 ELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQL 343 + RE+ R+L +P +P + + W D +AW+QG TG+P++DA MR+L Sbjct: 286 SIGLREYSRYLSFNHP-YSHERPLLGHLKFFPWVVDEGYFKAWRQGRTGYPLVDAGMREL 344 Query: 344 NTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSV 403 GWMH+R+R++ +SF VK L + WR G +YF LLD DL S+ GWQ+ + T D Sbjct: 345 WATGWMHDRIRVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTLPDGR 404 Query: 404 PYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIH----APHSWLDKNDLSL--NYP 457 + RI NP +G +FDP G ++R WLPEL +PT++IH AP S L + L NYP Sbjct: 405 EFDRIDNPQFEGYKFDPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYP 464 Query: 458 LPIVD 462 LPIV+ Sbjct: 465 LPIVE 469 >gi|161898816|gb|ABX80391.1| cryptochrome 1 [Vitis riparia] Length = 681 Score = 179 bits (453), Expect = 1e-42, Method: Compositional matrix adjust. Identities = 146/485 (30%), Positives = 219/485 (45%), Gaps = 44/485 (9%) Query: 5 TAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYAS 64 + +VW R DLR+ DN AL A VI VFI PE+ + ++ S Sbjct: 2 SGGGCSIVWFRRDLRVEDNPALAAGVRA--GAVIPVFIWAPEEEGPYYPGRVSRWWLKQS 59 Query: 65 LLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYE-INEVRRDKLL 123 L + SL G + + D + L T LF+N Y+ ++ VR + Sbjct: 60 LAHLDSSLRSLGTPLITKRST---DCVSSLLEIVKSTGATLLFFNHLYDPLSLVRDHRAK 116 Query: 124 EKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIR 183 E + SF+ +L P + + + ++ F + + LP I Sbjct: 117 EALTAQGIAVHSFNADLLYEPWDVNDAQGHSFTTFSAFWDRCLSMPYDPEAPLLPPKRIN 176 Query: 184 LTGPVT--PSNIPRFFDYPFQAIDPMFP----IGEQNALHILRKFCKEKVYYYVEQRDIP 237 G V+ PS+ F D + + + G NA L F + Y + Sbjct: 177 -PGDVSRCPSDTIAFEDESEKGSNALLARAWTPGWSNADKALTIFINGPLIEYSKNSRKA 235 Query: 238 AIQGTSQLSPYLSIGVLSPRQCW--------------NRLKEEFVDLLIKPKSGAFSWLN 283 TS LSP+L G +S R+ + N+ EE V+L +K Sbjct: 236 DSATTSFLSPHLHFGEVSVRKVFHLVRIKQVLWANEGNKAGEESVNLFLK---------- 285 Query: 284 ELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQL 343 + RE+ R+L +P +P + + W D +AW+QG TG+P++DA MR+L Sbjct: 286 SIGLREYSRYLSFNHP-YSHERPLLGHLKFFPWVVDEGYFKAWRQGRTGYPLVDAGMREL 344 Query: 344 NTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSV 403 GWMH+R+R++ +SF VK L + WR G +YF LLD DL S+ GWQ+ + T D Sbjct: 345 WATGWMHDRIRVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTLPDGR 404 Query: 404 PYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIH----APHSWLDKNDLSL--NYP 457 + RI NP +G +FDP G ++R WLPEL +PT++IH AP S L + L NYP Sbjct: 405 EFDRIDNPQFEGYKFDPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYP 464 Query: 458 LPIVD 462 LPIV+ Sbjct: 465 LPIVE 469 >gi|302814412|ref|XP_002988890.1| hypothetical protein SELMODRAFT_967 [Selaginella moellendorffii] gi|300143461|gb|EFJ10152.1| hypothetical protein SELMODRAFT_967 [Selaginella moellendorffii] Length = 489 Score = 179 bits (453), Expect = 1e-42, Method: Compositional matrix adjust. Identities = 139/476 (29%), Positives = 227/476 (47%), Gaps = 29/476 (6%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 LVW R DLR+ DN AL AA + V+ VF+ PE+ Q ++ SL+Q+ Sbjct: 5 LVWFRRDLRLDDNPALAAAVARKGSIVVPVFVWCPEEEGQFQPGRVSRWWLKQSLIQLSS 64 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL-QH 129 SL + G + + D+ L +++FYN Y+ + RD +++ L H Sbjct: 65 SLERLGAPLLVRRTAGTLDA---LLQIAHDTGASQVFYNHLYDPVSLIRDHRVKQGLADH 121 Query: 130 RVICKSFDDSVLLPPGSILNHALQMYKVYTPF-RKALIQNLVQADLRSLPVPAIRLTGPV 188 + K+F +L P I + Q++ + F K+L +A L P + L G + Sbjct: 122 GISVKTFRGDLLYEPWEIYDDQGQVFTTFQAFWSKSLSMRDPEAPLLP-PRQLLSLPGYL 180 Query: 189 TPS------NIPRFFDYPFQAI-----DPMFPIGEQNALHILRKFCKEKVYYYVEQRDIP 237 S + + A+ P + G++ L + Y + ++ I Sbjct: 181 CQSCSIDQLGLENEAEKSSNALLARSWTPGWCAGDKAFTDFL---SGPILQYSIRRKQID 237 Query: 238 AIQGTSQLSPYLSIGVLSPRQCWNRLK-EEFVDLLIKPKSGAFSWLNELIWREFYRHLMA 296 ++ TSQLSP+L G +S R+ + ++ ++F +L L RE+ R+L Sbjct: 238 SVT-TSQLSPHLHFGEISIRKIFYSIRMQQFRSKEAVDVESMNMFLRALGLREYSRYLSF 296 Query: 297 FYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMI 356 +P + + + W D ++W+QG TG+P++DA MRQL GW+H ++R++ Sbjct: 297 NFP-FTHKRSLLANLKHFPWRADEGYFKSWRQGRTGYPLVDAGMRQLWATGWLHCKIRVV 355 Query: 357 TASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGK 416 +SFLVK L V W G +YF LLD D+ ++ GWQ+ + D R NP ++G Sbjct: 356 VSSFLVKFLQVPWTWGMKYFWETLLDADVENDVLGWQYISGGLPDGHELDRWENPQVKGY 415 Query: 417 RFDPQGTFIRHWLPELNNVPTQYIH----APHSWLDKNDLSL--NYPLPIVDHKKA 466 + DP+G ++R WLPEL+ VP +IH AP + L + L NYP PIV+ A Sbjct: 416 KLDPKGEYVRKWLPELSRVPIDWIHHPWDAPSTILRAAGVELGSNYPRPIVEVAAA 471 >gi|225459298|ref|XP_002285792.1| PREDICTED: hypothetical protein [Vitis vinifera] Length = 681 Score = 179 bits (453), Expect = 1e-42, Method: Compositional matrix adjust. Identities = 146/485 (30%), Positives = 219/485 (45%), Gaps = 44/485 (9%) Query: 5 TAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYAS 64 + +VW R DLR+ DN AL A VI VFI PE+ + ++ S Sbjct: 2 SGGGCSIVWFRRDLRVEDNPALAAGVRA--GAVIPVFIWAPEEEGPYYPGRVSRWWLKQS 59 Query: 65 LLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYE-INEVRRDKLL 123 L + SL G + + D + L T LF+N Y+ ++ VR + Sbjct: 60 LAHLDSSLRSLGTPLITKRST---DCVSSLLEIVKSTGATLLFFNHLYDPLSLVRDHRAK 116 Query: 124 EKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIR 183 E + SF+ +L P + + + ++ F + + LP I Sbjct: 117 EALTAQGIAVHSFNADLLYEPWDVNDAQGHSFTTFSAFWDRCLSMPYDPEAPLLPPKRIN 176 Query: 184 LTGPVT--PSNIPRFFDYPFQAIDPMFP----IGEQNALHILRKFCKEKVYYYVEQRDIP 237 G V+ PS+ F D + + + G NA L F + Y + Sbjct: 177 -PGDVSRCPSDTIAFEDESEKGSNALLARAWTPGWSNADKALTIFINGPLIEYSKNSRKA 235 Query: 238 AIQGTSQLSPYLSIGVLSPRQCW--------------NRLKEEFVDLLIKPKSGAFSWLN 283 TS LSP+L G +S R+ + N+ EE V+L +K Sbjct: 236 DSATTSFLSPHLHFGEVSVRKVFHLVRIKQVLWANEGNKAGEESVNLFLK---------- 285 Query: 284 ELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQL 343 + RE+ R+L +P +P + + W D +AW+QG TG+P++DA MR+L Sbjct: 286 SIGLREYSRYLSFNHP-YSHERPLLGHLKFFPWVVDEGYFKAWRQGRTGYPLVDAGMREL 344 Query: 344 NTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSV 403 GWMH+R+R++ +SF VK L + WR G +YF LLD DL S+ GWQ+ + T D Sbjct: 345 WATGWMHDRIRVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTLPDGR 404 Query: 404 PYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIH----APHSWLDKNDLSL--NYP 457 + RI NP +G +FDP G ++R WLPEL +PT++IH AP S L + L NYP Sbjct: 405 EFDRIDNPQFEGYKFDPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYP 464 Query: 458 LPIVD 462 LPIV+ Sbjct: 465 LPIVE 469 >gi|213158208|ref|YP_002320259.1| deoxyribodipyrimidine photo-lyase [Acinetobacter baumannii AB0057] gi|213057368|gb|ACJ42270.1| deoxyribodipyrimidine photo-lyase [Acinetobacter baumannii AB0057] Length = 136 Score = 178 bits (452), Expect = 1e-42, Method: Compositional matrix adjust. Identities = 81/127 (63%), Positives = 99/127 (77%), Gaps = 2/127 (1%) Query: 340 MRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTG 399 MRQL GWMHNR+RMITA FL K+LL+DWRIGE++FM L+DGDLA+NNGGWQW ASTG Sbjct: 1 MRQLLQTGWMHNRVRMITAMFLCKNLLIDWRIGEQWFMQHLIDGDLAANNGGWQWCASTG 60 Query: 400 NDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLP 459 D+VPYFRIFNP Q K+FDP+G +IR W+ EL ++ + IH P+S K+DL LNY P Sbjct: 61 TDAVPYFRIFNPIAQSKKFDPEGEYIRQWIKELAHLDNKTIHEPYS--SKSDLGLNYSKP 118 Query: 460 IVDHKKA 466 IVD K+ Sbjct: 119 IVDLKET 125 >gi|218437350|ref|YP_002375679.1| cryptochrome, DASH family [Cyanothece sp. PCC 7424] gi|218170078|gb|ACK68811.1| cryptochrome, DASH family [Cyanothece sp. PCC 7424] Length = 488 Score = 178 bits (452), Expect = 2e-42, Method: Compositional matrix adjust. Identities = 142/489 (29%), Positives = 239/489 (48%), Gaps = 33/489 (6%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHG-----ISARQSHFIYASL 65 L+W RNDLR+ D++AL A A +I + Q+R ++ F+ S+ Sbjct: 7 LIWFRNDLRLHDHEALNEALQEK-ADIIPFYCFDERQFRTTSYGFPKTGKFRAQFLLESV 65 Query: 66 LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125 +++SL + G Q + I + +T L+Y+ + E+ +K L+K Sbjct: 66 ADLRQSLQKLGSNLVIRQ--GLPELI--IPQIAQPLNITALYYHEEVTAEELTVEKRLKK 121 Query: 126 RLQH-RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL 184 L + +SF + L P ++ Q+ +++T FRK + + A + LP P Sbjct: 122 ALAKCNIKVESFWGTTLYHPDNLPFEIYQLPELFTNFRKQVERKSTVAPV--LPAPKSLP 179 Query: 185 TGP-VTPSNIPRFFDYPFQ--AIDP----MFPIGEQNALHILRKFCKEK--VYYYVEQR- 234 P + N+P + + +P F GE L+ + +K + Y E R Sbjct: 180 PLPDLDIGNLPSLSELGLEPAVFEPRGVLKFQGGEIAGRERLQDYIWQKNCLKNYKETRN 239 Query: 235 DIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHL 294 ++ +S+ SP+L+ G LSPR + + +++ +K S + + EL+WR+F+R + Sbjct: 240 EMLGADYSSKFSPWLAHGCLSPRYIYEEV-QKYEHQRVKNDS-TYWLIFELLWRDFFRFI 297 Query: 295 MAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLR 354 A + + + + + W +D + W++G TG+P++DA MR+L T G+M NR R Sbjct: 298 CAKHGNKIFFSQGLQGID-LPWKEDWQRFKLWQEGKTGYPLVDANMRELATTGFMSNRGR 356 Query: 355 MITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQ 414 ASFL K+L ++W +G E+F S L+D D+ SN G W + A GND+ FR FN Q Sbjct: 357 QNVASFLTKNLGINWLMGAEWFESLLIDYDVCSNYGNWNYTAGVGNDARG-FRYFNIPKQ 415 Query: 415 GKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND------LSLNYPLPIVDHKKACH 468 K +DP+G ++R+WLPEL VP IH P + L ++YP P+VD K+ Sbjct: 416 SKDYDPKGDYLRYWLPELALVPGDKIHEPWKLSQEEQKRYRVRLGVDYPHPVVDFFKSVK 475 Query: 469 HTLNQYYAA 477 Y+ A Sbjct: 476 GNEALYHRA 484 >gi|45935258|gb|AAS79664.1| mutant cryptochrome 1-1 protein [Pisum sativum] Length = 682 Score = 178 bits (452), Expect = 2e-42, Method: Compositional matrix adjust. Identities = 145/490 (29%), Positives = 226/490 (46%), Gaps = 44/490 (8%) Query: 5 TAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYAS 64 ++ +VW R DLR+ DN AL A V+ VFI PE+ Q+ ++ S Sbjct: 2 SSGGCSIVWFRRDLRVEDNPALAAGVRA--GAVVGVFIWAPEEEGQYYPGRVSRWWLKNS 59 Query: 65 LLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYE-INEVRRDKLL 123 L Q+ SL G + + DSI L T++F+N Y+ ++ VR + Sbjct: 60 LSQLDSSLRNLGTPLVTKRST---DSISSLLEVVKSTGATQIFFNHLYDPLSLVRDHRAK 116 Query: 124 EKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIR 183 E + +S++ +L P + + Q + + F + + LP P Sbjct: 117 EILTAQGITVRSYNSDLLYEPWDVNDEHGQPFTTFDSFWERCLSMPYDPQAPLLP-PKRI 175 Query: 184 LTGPVT--PSNIPRFFDYPFQAIDPMFP----IGEQNALHILRKFCKEKVYYYVEQRDIP 237 + G V+ PS+ F D ++ + + G NA L F + Y R Sbjct: 176 IPGDVSRCPSDTLVFEDELEKSSNALLARAWSPGWSNANKALTTFINGPLIEYSVNRRKA 235 Query: 238 AIQGTSQLSPYLSIGVLSPRQCW--------------NRLKEEFVDLLIKPKSGAFSWLN 283 TS LSP+L +S ++ + N+ EE V+L +K Sbjct: 236 DSATTSFLSPHLHFEEVSVKKVFHLVRIKQVFWANEGNKAGEESVNLFLK---------- 285 Query: 284 ELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQL 343 + RE+ R++ +P +P + + W D +AW+QG TG+P++DA MR+L Sbjct: 286 SIGLREYSRYISFNHP-YSHERPLLGHLKFFPWVVDEGYFKAWRQGRTGYPLVDAGMREL 344 Query: 344 NTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSV 403 GW+H+R+R++ +SF VK L + WR G +YF LLD DL S+ GWQ+ + T D Sbjct: 345 WATGWLHDRIRVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTLPDGR 404 Query: 404 PYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIH----APHSWLDKNDLSL--NYP 457 + RI NP +G + DP G ++R WLPEL +PT++IH AP S L + L NYP Sbjct: 405 EFDRIDNPQFEGYKCDPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYP 464 Query: 458 LPIVDHKKAC 467 LPIV+ A Sbjct: 465 LPIVEIDAAT 474 >gi|124006560|ref|ZP_01691393.1| deoxyribodipyrimidine photolyase [Microscilla marina ATCC 23134] gi|123987973|gb|EAY27653.1| deoxyribodipyrimidine photolyase [Microscilla marina ATCC 23134] Length = 483 Score = 178 bits (451), Expect = 2e-42, Method: Compositional matrix adjust. Identities = 136/480 (28%), Positives = 228/480 (47%), Gaps = 34/480 (7%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGIS-----ARQSHFIYA 63 V +VW RNDLR+ DN L A ++D ++ V+ P Q+ + A ++ F+ Sbjct: 14 VKIVWFRNDLRVHDNDVLAKAASDADY-LLPVYCFDPRQYETTSLGFAKTGAHRAQFLIE 72 Query: 64 SLLQVQKSLSQKG--IVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDK 121 +L ++ +L KG +V + + E + + ++ +++ E K Sbjct: 73 TLANLRANLEAKGSGLVIRIGKPE------EVIADLAKATQAKAVYASQEIGTEEDATVK 126 Query: 122 LLEKRL-QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVP 180 LEKRL +++V + L+ P + + V+T FRK + Q L + +LP Sbjct: 127 QLEKRLWKNQVFLELLWTGNLIHPADLPFPLNSLSNVFTDFRKEIEQGLKVREAVTLPDT 186 Query: 181 AIRLTGPVTPSNIPRFFDYPFQAIDP------MFPIGEQNALHILRKFCKEK--VYYYVE 232 L V ++P+ D P F GE L + + ++ + +Y + Sbjct: 187 LPLLPPGVEAGSLPKLTDLGLTHTTPDTRAVLHFKGGETAGLQRIEDYIWQRSLLQHYKD 246 Query: 233 QRD-IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFY 291 R+ + +++ SP+L+ G +S R ++ +K+ + ++K KS + + EL+WRE++ Sbjct: 247 TRNGLLGADYSTKFSPWLANGAISARTVYHEIKK-YEQQVVKNKS-TYHLVFELLWREYF 304 Query: 292 RHLMAFYPSVCMGKPFIPWTEKIEWNKD-SHLLQAWKQGYTGFPIIDAAMRQLNTIGWMH 350 R + Y K I ++E + + + WK G TG P IDA MR+LN G+M Sbjct: 305 RLVARKYGHRIFVKGGIKAKGEVEMSSNRKRTFKRWKNGETGIPFIDANMRELNATGFMS 364 Query: 351 NRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFN 410 NR R AS+L KDL ++W G YF SQL+D D++SN W + A GND R F+ Sbjct: 365 NRGRQNVASYLTKDLKINWVHGAMYFESQLIDYDVSSNWCNWNYVAGVGNDPRKD-RYFD 423 Query: 411 PTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND------LSLNYPLPIVDHK 464 Q R+D +G +++HWLPEL ++P +H PH L +YP PI K Sbjct: 424 ILSQANRYDNKGAYVKHWLPELASIPENKVHEPHQLKATEQQAYEMILGQDYPKPIPGKK 483 >gi|119486492|ref|ZP_01620550.1| probable bacterial cryptochrome [Lyngbya sp. PCC 8106] gi|119456394|gb|EAW37525.1| probable bacterial cryptochrome [Lyngbya sp. PCC 8106] Length = 515 Score = 177 bits (450), Expect = 2e-42, Method: Compositional matrix adjust. Identities = 145/504 (28%), Positives = 250/504 (49%), Gaps = 63/504 (12%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGI-----SARQSHFIYASL 65 L+W RNDLR+ D++ L+ A + A++I V+ P Q+ + ++ F+ S+ Sbjct: 29 LIWYRNDLRVHDHEPLHLAVK-AQAEIIPVYCFDPRQFGKTSFGFPKTGVFRAQFLLESV 87 Query: 66 LQVQKSLSQKG--IVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLL 123 ++ SL + G ++ +Y +F +++ + Q + +++Y R+ E+ + L Sbjct: 88 TDLRNSLRKLGSDLIVRY----DFPETV--IPELVKQLGIDEVYYYREVTSEELAVETTL 141 Query: 124 EKRLQH-RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQN-LVQADL---RSLP 178 EK L V KS+ + L + ++ +V+T FRK + +N + A + LP Sbjct: 142 EKALNPLDVSLKSYWGATLYDLDDLPFSINRIPEVFTQFRKQVEKNGTIYASFPTPQRLP 201 Query: 179 V---------PAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEK--V 227 + P ++ G TP FD Q F GE + L + E+ + Sbjct: 202 ILPQIEVGELPTLQKLGLETPQ-----FD---QRSVLKFQGGETAGISRLTDYIWEQDCL 253 Query: 228 YYYVEQRD-IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELI 286 Y + R+ + +S+ SP+L++G LSPR ++ + +++ + +K S + + EL+ Sbjct: 254 KDYKQTRNGMLGANYSSKFSPWLALGCLSPRFIYDHV-QDYEEQRVKNDS-TYWLVFELL 311 Query: 287 WREFYR-----HLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMR 341 WR+++R H + + IPW E +W + + W+ G TGFP++DA MR Sbjct: 312 WRDYFRFICLKHGNKIFRLSGLQGVSIPWKE--DWER----FECWRTGTTGFPLVDANMR 365 Query: 342 QLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGND 401 +L G+M NR R ASFL K+L ++W++G E+F S L+D D+ SN G W + A GND Sbjct: 366 ELAATGFMSNRGRQNVASFLTKNLGINWKMGAEWFESLLVDYDVCSNWGNWNYTAGVGND 425 Query: 402 SVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKN--------DLS 453 + FR FN Q K +D G +++HWLPEL +P +H P W+ + L Sbjct: 426 ARG-FRYFNIPKQAKDYDSNGDYVKHWLPELAALPASKVHEP--WMLQPVEQKRFGVKLG 482 Query: 454 LNYPLPIVDHKKACHHTLNQYYAA 477 ++YP P+VD K+ Y AA Sbjct: 483 VDYPNPVVDLMKSVQSNKKSYEAA 506 >gi|227548195|ref|ZP_03978244.1| possible deoxyribodipyrimidine photo-lyase [Corynebacterium lipophiloflavum DSM 44291] gi|227079756|gb|EEI17719.1| possible deoxyribodipyrimidine photo-lyase [Corynebacterium lipophiloflavum DSM 44291] Length = 440 Score = 177 bits (450), Expect = 2e-42, Method: Compositional matrix adjust. Identities = 135/458 (29%), Positives = 209/458 (45%), Gaps = 82/458 (17%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 +VW R+DLR+ DN AL A V+ +++ + GI + ++ SL +++ Sbjct: 6 IVWFRDDLRLADNAALTWATERG--PVVGLYV---HETVGRGIGRAAAWWLRHSLDALRE 60 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130 SL I D E + ++ + +NR+Y + ++ + ++ Sbjct: 61 SLPAPLIELA-------GDPRE-IVPRLARELGAAVTWNRRYHLTDI------DAEVKEA 106 Query: 131 VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTP 190 S +L P + Y+V+TPF A L+ A LPVP I TP Sbjct: 107 TGAVSHPGYLLTEPWDVR---ATPYRVFTPFFNAARSVLLDAPPTPLPVPHI------TP 157 Query: 191 SNIPRFFDYPFQAIDPMFPI-----------GEQNALHILRKFCKEKVYYYVEQRDIPAI 239 ++I P P P GE A L++F Y D A+ Sbjct: 158 ADI-----GPATVYAPAEPAWAASLAQHNTPGEGAAREQLKRFIAASADY-----DNNAL 207 Query: 240 QG-TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFY 298 G TS LSP+L G +SP + W L +GA+++ +L+WR+F H Sbjct: 208 DGVTSGLSPHLRFGEISPAEVW----------LAAVDAGAWAFARQLLWRDFAWHRYYHV 257 Query: 299 PSVC---MGKPF----IPWT-EKIEWNKDSHL--------------LQAWKQGYTGFPII 336 P + + + F WT + + D+ L AW+ G TG P++ Sbjct: 258 PDMATKNVRRKFDRFDWEWTPNAVPGSTDAAFAHAEMDPGAQHMKELAAWQSGRTGIPLV 317 Query: 337 DAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAA 396 DA MR+L G MHNR+RM++ S+L K+L + WR GEE+F L+D D ASN WQW A Sbjct: 318 DAGMRELWATGRMHNRVRMVSGSWLTKNLGIHWRHGEEWFWDTLVDADAASNAFNWQWVA 377 Query: 397 STGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNN 434 +G+D+ PYFRIFNP Q ++FDP G+++ WLP+ + Sbjct: 378 GSGDDAAPYFRIFNPLTQAEKFDPHGSYVARWLPDTAD 415 >gi|302772993|ref|XP_002969914.1| hypothetical protein SELMODRAFT_92414 [Selaginella moellendorffii] gi|300162425|gb|EFJ29038.1| hypothetical protein SELMODRAFT_92414 [Selaginella moellendorffii] Length = 559 Score = 177 bits (450), Expect = 2e-42, Method: Compositional matrix adjust. Identities = 143/488 (29%), Positives = 236/488 (48%), Gaps = 36/488 (7%) Query: 6 AMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASL 65 + + +LVW R DLR+ DN AL AA N+ V+ +FI P + + ++ SL Sbjct: 4 SKACNLVWFRRDLRVEDNPALLAA-ANAPGVVLPIFIWCPAEEGEFQPGRHSRWWLKQSL 62 Query: 66 LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQY-EINEVRRDKLLE 124 + + SL+ G + +D++ L + T++F N Y + V RD+ ++ Sbjct: 63 IHLDASLASYGCSLLLQKG---NDTLSVLVNIARATGSTQIFCNHLYADPITVARDRRVK 119 Query: 125 KRL-QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADL------RSL 177 +RL ++ + +F+ L P I + + + F ++ + D+ R Sbjct: 120 QRLLEYGIFVHNFNCDTLHEPWEIYDEQGHAFTTFAGFWNRFLRTRFEPDMPDSSQARLF 179 Query: 178 P----VPAIRLTGPV-TPSNIPRFF--DYPFQAIDPMFPI----GEQNALHILRKFCKEK 226 P + I G + TP +I D ++ + + G ++A L+ F Sbjct: 180 PYREYLDLISFAGNLPTPCSIEELCLEDESEKSSNELLARTWSPGCKHANDALQAFLVGP 239 Query: 227 VYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWN--RLKEEFVDLLIKPKSGAFSWLNE 284 + Y R+ A TS LSPYL G LS R+ +N R K+ + L P+ A +L Sbjct: 240 LNDYTTSRET-ADNSTSHLSPYLHFGELSIRKLYNCIRSKQRDEEQLFCPRRNAHLFLRA 298 Query: 285 LIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLN 344 + RE+ R++ +P + W D +AWK G TG+P++DAAMR+L Sbjct: 299 IGLREYSRYISFHFPFTQEQSLL----KNFPWRNDEIHFKAWKLGKTGYPLVDAAMRELW 354 Query: 345 TIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVP 404 + GW+H +LR++T+SFL+K L + W G +YF LLD DL S+ GW++ + D Sbjct: 355 STGWLHCKLRVVTSSFLIKFLQLPWTWGIKYFWDTLLDADLESDILGWKYVSGCLTDGHE 414 Query: 405 YFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHS------WLDKNDLSLNYPL 458 R+ +P +G + DP+G ++R WLPEL+ +P Q+IH P+S +L NYP Sbjct: 415 LDRVLDPHEEGCKLDPKGEYVRRWLPELSRLPNQWIHHPYSAPVSRLQAAGVELGTNYPK 474 Query: 459 PIVDHKKA 466 PIVD + A Sbjct: 475 PIVDMEVA 482 >gi|255545724|ref|XP_002513922.1| DNA photolyase, putative [Ricinus communis] gi|223547008|gb|EEF48505.1| DNA photolyase, putative [Ricinus communis] Length = 660 Score = 177 bits (450), Expect = 3e-42, Method: Compositional matrix adjust. Identities = 152/486 (31%), Positives = 222/486 (45%), Gaps = 65/486 (13%) Query: 5 TAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHF-IYA 63 + +VW R DLR+ DN AL A V+AVF+ PE+ H R S + + Sbjct: 2 SGGGCSIVWFRRDLRVEDNPALAAGVRA--GAVVAVFVWAPEE-EGHYYPGRVSRWWLKQ 58 Query: 64 SLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYE-INEVRRDKL 122 SL + SL G V + + DS+ L T+LF+N Y+ I+ VR + Sbjct: 59 SLAHLDSSLRSLGTVLVSKRST---DSVSSLLEVVKSTGATQLFFNHLYDPISLVRDHRA 115 Query: 123 LEKRLQHRVICKSFDDSVLLPPGSILNHALQM-YKVYTPFRKALIQNLVQADLRSLPVPA 181 E + +S + PG L M Y P LP P Sbjct: 116 KEVLTAQGIAVRSLTRICYMNPGXX---CLSMPYDPEAPL---------------LP-PK 156 Query: 182 IRLTGPVT--PSNIPRFFDYPFQAIDPMFP----IGEQNALHILRKFCKEKVYYYVEQRD 235 ++G ++ PS+ F D + + + G NA L F + Y + R Sbjct: 157 RIISGDISRCPSDTLIFEDESEKGSNALLARAWSPGWSNANKALTTFINGPLIEYSKNRR 216 Query: 236 IPAIQGTSQLSPYLSIGVLSPRQC----------W----NRLKEEFVDLLIKPKSGAFSW 281 TS LSP+L G +S R+ W N+ EE V+L +K Sbjct: 217 KADSATTSFLSPHLHFGEVSVRKVLHLVRIKQVLWANEGNKAGEESVNLFLK-------- 268 Query: 282 LNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMR 341 + RE+ R+L +P +P + + W + +AW+QG TG+P++DA MR Sbjct: 269 --SIGLREYSRYLSFNHP-YSHERPLLGHLKFFPWIVNEGYFKAWRQGRTGYPLVDAGMR 325 Query: 342 QLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGND 401 +L GW+H+R+R++ +SF VK L + WR G +YF LLD DL S+ GWQ+ + T D Sbjct: 326 ELWATGWLHDRIRVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTLPD 385 Query: 402 SVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIH----APHSWLDKNDLSL--N 455 + RI NP +G +FDP G ++R WLPEL +PT++IH AP S L + L N Sbjct: 386 GREFDRIDNPQFEGYKFDPHGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSN 445 Query: 456 YPLPIV 461 YPLPIV Sbjct: 446 YPLPIV 451 >gi|218191203|gb|EEC73630.1| hypothetical protein OsI_08136 [Oryza sativa Indica Group] Length = 665 Score = 177 bits (449), Expect = 3e-42, Method: Compositional matrix adjust. Identities = 138/487 (28%), Positives = 228/487 (46%), Gaps = 42/487 (8%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 +VW R DLRI DN AL +A D V+ VFI P Q ++ SL + + Sbjct: 8 VVWFRRDLRIDDNPALASAAR--DGAVLPVFIWCPADEGQFYPGRCSRWWLKQSLPHLSQ 65 Query: 71 SLSQKGI-VFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYE-INEVRRDKLLEKRLQ 128 SL G + S + + +DS T+L YN Y+ ++ VR DK+ ++ Sbjct: 66 SLESLGCPLVLIRAESTLEALLRCIDSV----GATRLVYNHLYDPVSLVRDDKIKKELSA 121 Query: 129 HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQ-----ADLRSLPVPAIR 183 + +SF+ +L P I + + + + + + ++ + A + +PVP + Sbjct: 122 LGISIQSFNGDLLYEPWEIYDDSGLAFTTFNMYWEKCMELPIDVSPSLAPWKLVPVPGLE 181 Query: 184 LTGPVTPSNIPRFFDYPFQAIDPMF----PIGEQNALHILRKFCKEKVYYYVEQRDIPAI 239 + ++ ++ + + G +NA +L +F + Y + Sbjct: 182 SVRSCSVDDLGLESSKDEESSNALLRRAWSPGWRNAEKMLEEFVSHGLLEYSKHGMKVEG 241 Query: 240 QGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFS----WLNELIWREFYRHLM 295 TS LSPYL G +S R+ + ++ + + + S A ++ + RE+ R+L Sbjct: 242 ATTSLLSPYLHFGEVSVRKVYQLVRMQQIKWENEGTSEAEESIHFFMRSIGLREYSRYLC 301 Query: 296 AFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRM 355 +P K + + W D ++W+QG TG+P++DA MR+L GW HNR+R+ Sbjct: 302 FNFP-FTHEKSLLGNLKHYPWKVDEERFKSWRQGMTGYPLVDAGMRELWATGWTHNRIRV 360 Query: 356 ITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTI-- 413 I +SF VK LL+ W G +YF LLD DL S+ GWQ+ + + D R+ NP I Sbjct: 361 IISSFAVKFLLIPWTWGMKYFWDVLLDADLESDILGWQYISGSLPDGHELSRLDNPEIME 420 Query: 414 ------------QGKRFDPQGTFIRHWLPELNNVPTQYIH----APHSWLDKN--DLSLN 455 QG+++DP G ++R W+PEL +PT++IH AP L+ +L N Sbjct: 421 NVIATYYALCMVQGQKYDPDGVYVRTWIPELARMPTEWIHHPWDAPSCILEVAGVELGFN 480 Query: 456 YPLPIVD 462 YP PIVD Sbjct: 481 YPKPIVD 487 >gi|159029066|emb|CAO90052.1| unnamed protein product [Microcystis aeruginosa PCC 7806] Length = 485 Score = 177 bits (449), Expect = 3e-42, Method: Compositional matrix adjust. Identities = 145/498 (29%), Positives = 245/498 (49%), Gaps = 53/498 (10%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISAR--------QSHFIY 62 L+W RNDLR+ D++A+Y A + I F E RQ G ++ ++ F+ Sbjct: 4 LIWYRNDLRVHDHEAIYRAIQ--EQLEIIPFYCFDE--RQFGFTSYGFPKTGKFRAKFLL 59 Query: 63 ASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKL 122 S+ +Q+SL G + E + + ++ +++Y+++ E+ +K Sbjct: 60 ESVANLQQSLEGLGGNLIIRRGK----PEEIIPQLVQELQIARVYYHQEVTAEELAVEKA 115 Query: 123 LEKRLQHR-VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPA 181 + K L V K+F + L P + Q+ +++T FRK + ++ ++R+ Sbjct: 116 VNKALSGVPVQIKTFWTATLYHPDDLPFTVNQLPELFTNFRKQIERHW---EIRTTYASP 172 Query: 182 IRLTG--PVTPSNIPRFFDYPFQAI------DPMFPIGEQNALHILRKFC--KEKVYYYV 231 +LT + N+P D + F GE ++++ + + Y Sbjct: 173 KKLTKLPKIDWGNLPSLNDLGLTELILDRGGVLSFQGGEMAGKSRVKEYIWDSDSLKTYK 232 Query: 232 EQR-DIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREF 290 E R ++ +S+ S +LS+G LSPR + + +++ +K S + + EL+WR+F Sbjct: 233 ETRNEMLGTNYSSKFSAWLSLGCLSPRYIYEEV-QKYEQTRVKNDS-TYWLIFELLWRDF 290 Query: 291 YRHLMA------FYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLN 344 +R + + FY S + + +PW E +W + W +G TG+P++DA MR+L Sbjct: 291 FRFICSKHGNKIFYKS-GLQELNLPWLE--DWQR----FNLWCEGKTGYPLVDANMRELA 343 Query: 345 TIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVP 404 G+M NR R ASFL K+L +DWR+G E+F S L+D D+ SN G W + A GND+ Sbjct: 344 ATGFMSNRGRQNVASFLTKNLGIDWRMGAEWFESLLVDYDVCSNWGNWNYTAGVGNDARG 403 Query: 405 YFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSW-LDKND-----LSLNYPL 458 FR FN Q K +DP+G ++RHWLPEL + IH P+ L++ L +NYP Sbjct: 404 -FRYFNIPKQSKDYDPKGDYLRHWLPELALIKGDKIHEPYKLSLEEQKRYGVILGVNYPR 462 Query: 459 PIVDHKKACHHTLNQYYA 476 PIVD ++ H Y A Sbjct: 463 PIVDFFQSIKHNEKIYLA 480 >gi|268679778|ref|YP_003304209.1| deoxyribodipyrimidine photo-lyase [Sulfurospirillum deleyianum DSM 6946] gi|268617809|gb|ACZ12174.1| Deoxyribodipyrimidine photo-lyase [Sulfurospirillum deleyianum DSM 6946] Length = 452 Score = 177 bits (448), Expect = 5e-42, Method: Compositional matrix adjust. Identities = 141/492 (28%), Positives = 216/492 (43%), Gaps = 75/492 (15%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 ++W R DLR+ D+ L + + +V+ +FI + R+ FI+ +L ++ Sbjct: 4 VLWFRRDLRVDDSMLL-----SVEGEVLPIFIFDTHILNSLPKTDRRVAFIFEQVLSLKA 58 Query: 71 SLSQKGI-----------VFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRR 119 L G+ VF Y + F D +D Y+ R Sbjct: 59 KLKALGLDLALFYGTPLEVFSYLKTLGFSDVYASVD----------------YDAYAKER 102 Query: 120 DKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPV 179 D+ + L+ + +DS L P +L Y V+TPF KA Q Q + Sbjct: 103 DEKVGAILRFHAL----NDSYLFEPTEVLKKDGTPYLVFTPFYKACQQLYTQFHVLKYTK 158 Query: 180 PAIRLTG-----------------PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKF 222 RL V NI F + ++P AL Sbjct: 159 ATQRLCEFDCSALWHIEKESKTALHVKMENIG-FIPLHVKLLEP------HKALEAFT-- 209 Query: 223 CKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWL 282 CK Y RD A TS LS +L G + R+ L L K + Sbjct: 210 CKLDAY--AHDRDFLACDATSHLSVHLRFGTIGIREVVRYLVA-----LKKQGHTTEPFF 262 Query: 283 NELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQ 342 +LI+REFY +L+ +P + +T E N++S+ + + TG+P++DAA+R+ Sbjct: 263 RQLIFREFYAYLLYHFPHLAWKN--YKYTPPYEENQESY--ERFITAQTGYPLVDAAVRE 318 Query: 343 LNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDS 402 L G MHNR RM+ SF K LL+ W+ GE +F LLD D ++N WQW A TG D Sbjct: 319 LLETGLMHNRARMVVGSFFTKHLLLPWQRGEAFFAEHLLDYDASANILSWQWCAGTGIDP 378 Query: 403 VPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVD 462 PYFRIFNP Q +FD + +I+ +LP+L ++P+ +H S+L +++ +YP PI+ Sbjct: 379 QPYFRIFNPYAQSLKFDKEALYIKRFLPQLRDIPSSLLHK-ESYLLSHNIP-HYPKPIIQ 436 Query: 463 HKKACHHTLNQY 474 H+KA LN + Sbjct: 437 HEKARKRFLNAF 448 >gi|6594298|dbj|BAA88424.1| blue light photoreceptor [Adiantum capillus-veneris] gi|6594302|dbj|BAA88426.1| blue light photoreceptor [Adiantum capillus-veneris] Length = 487 Score = 176 bits (447), Expect = 6e-42, Method: Compositional matrix adjust. Identities = 137/479 (28%), Positives = 231/479 (48%), Gaps = 26/479 (5%) Query: 8 SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67 S +VWLR DLR+ DN AL A +A V+ VF+ PE+ Q ++ SL Q Sbjct: 4 STTIVWLRRDLRLDDNPALKEASKIGNA-VVPVFVWVPEEEGQFQQGRMSRWWLKQSLKQ 62 Query: 68 VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYE-INEVRRDKLLEKR 126 + +SL G + S+ S++ L + + +++F+N Y+ I+ VR ++ E Sbjct: 63 LAQSLDSLGSPLIIRRSSS---SLQALMDLVIHTQASQVFFNHLYDPISLVRDQRVKEGL 119 Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQAD-------LRSLPV 179 LQ + ++F+ +L P + + + + + + F + N+ + RSL Sbjct: 120 LQTGIHVRTFNADLLYEPWQVNDPSGKAFTTFNEFWDKCL-NMPEEPHAPLLPPTRSLLA 178 Query: 180 PAIRLTG-PVTPSNIPRFFDYPFQAI-DPMFPIGEQNALHILRKFCKEKVYYYVEQRDIP 237 A L G V + + A+ + G NA L F + + Y + + Sbjct: 179 FAGHLPGCTVEDLELENNSEKDSNALLARSWTPGWINAEKALEAFVERHLLQYAANQHMV 238 Query: 238 AIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELI----WREFYRH 293 TS LSP+L G LS R+ + ++ + V + K +N + R++ R+ Sbjct: 239 DGSTTSFLSPHLHFGELSVRKVFYNVRIKAVQWTKEGKPDGEQSVNLFLRSIGLRDYSRY 298 Query: 294 LMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRL 353 + +P + + W D L +AW+QG TG+P++DA MRQ+ GW+HNR+ Sbjct: 299 ICFNFP-FTHERLILQNRRPFPWRVDEGLFKAWRQGRTGYPLVDAGMRQIWATGWLHNRI 357 Query: 354 RMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTI 413 R+I +SF VK L + W G +YF LLD DL ++ GWQ+ + D R+ + I Sbjct: 358 RVIVSSFFVKVLQLPWTWGMKYFWDALLDADLENDILGWQYISGGLPDGHELERMDDLQI 417 Query: 414 QGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKN------DLSLNYPLPIVDHKKA 466 +G ++DP+G ++R WLPEL+ +PT++IH P + +L NYP P+V+ A Sbjct: 418 EGYKYDPRGEYVRKWLPELSRLPTEWIHHPWDAPPRALRAAGVELGSNYPRPLVEFAAA 476 >gi|291303346|ref|YP_003514624.1| Deoxyribodipyrimidine photo-lyase [Stackebrandtia nassauensis DSM 44728] gi|290572566|gb|ADD45531.1| Deoxyribodipyrimidine photo-lyase [Stackebrandtia nassauensis DSM 44728] Length = 436 Score = 176 bits (446), Expect = 8e-42, Method: Compositional matrix adjust. Identities = 133/432 (30%), Positives = 198/432 (45%), Gaps = 43/432 (9%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M +V DLRI DN AL A ++D V+ +++A + Q F+ SL Sbjct: 37 MRTIVVLFTRDLRIRDNPALALASRHADT-VVPLYVADDSP----PLPPNQRRFLVESLT 91 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVR-RDKLLEK 125 +++SL + G + D +E C + Y R R +L E Sbjct: 92 DLRESLRRLGGDLLVRRG----DPVEQTLKLCRLLATDGIGMAEDYGPAARRLRQRLAEA 147 Query: 126 RLQHRVICKSFDDSVLLPPGSIL-NHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL 184 RV + F ++ PG++ YKV+TP+ ++ + + + AIRL Sbjct: 148 AEAERVGLRLFPGVTIVEPGAVRPTTGADHYKVFTPYLRSWSATPWRPEHEA--PQAIRL 205 Query: 185 TGPVTPSNIPRFFDYPFQAIDPM-------FPIGEQNALHILRKFCKEKVYYYVEQRDIP 237 VT D P I P+ GE L + + Y D+ Sbjct: 206 PADVT-------GDDPASVIGPVEGGSSDVVDGGETAGLRRWDSWIDREPDYPAIHDDL- 257 Query: 238 AIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAF 297 A T++LS YL G +SP + + P++ + + +L WR+FY ++ Sbjct: 258 AADDTTRLSGYLRFGCVSP-----------LVVAADPRT-PEALVRQLCWRDFYHQVLHG 305 Query: 298 YPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMIT 357 +P + + P + W D L+AW+ G TG P++DA MRQL T GWMHNR RM+ Sbjct: 306 FPRLATDN-YRP-GARDAWVDDEPALRAWQDGETGVPLVDAGMRQLRTQGWMHNRARMVA 363 Query: 358 ASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKR 417 AS+L KDL +DWR G +F L+D D+A+N G WQW A TGNDS PY R FNP Q +R Sbjct: 364 ASYLTKDLGIDWRHGAAWFDRWLVDADVANNYGNWQWTAGTGNDSRPYRR-FNPARQAQR 422 Query: 418 FDPQGTFIRHWL 429 +DP+ + WL Sbjct: 423 YDPRHEYRDRWL 434 >gi|28201254|dbj|BAB70688.2| cryptochrome 1b [Oryza sativa Japonica Group] Length = 700 Score = 176 bits (446), Expect = 8e-42, Method: Compositional matrix adjust. Identities = 148/478 (30%), Positives = 225/478 (47%), Gaps = 42/478 (8%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 +VW R DLR+ DN AL AA +V+ ++ PE+ + ++ SL + Sbjct: 21 VVWFRRDLRVEDNPALAAAARAG-GEVVPAYVWAPEEDGPYYPGRVSRWWLSQSLKHLDA 79 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYE-INEVRRDKLLEKRLQH 129 SL + G + S D++ L T+LF+N Y+ I+ VR +L E Sbjct: 80 SLRRLGAGKLVTRRSA--DAVVALLQLVRDTGATRLFFNHLYDPISLVRDHRLKEMMAAE 137 Query: 130 RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189 +I +SF+ +L P +++ Q + ++ PF + LP I +G ++ Sbjct: 138 GIIVQSFNADLLYEPWEVVDDEGQSFTMFAPFWNRCLSMPYDPAAPLLPPKRIN-SGDLS 196 Query: 190 --PSNIPRFFDYPFQAIDPMFP----IGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS 243 PS+ F D + + + G QNA L F + +Y R TS Sbjct: 197 MCPSDDLIFEDDSERGSNALLARAWSPGWQNADKALTAFLNGPLIHYSVNRKKADSASTS 256 Query: 244 QLSPYLSIGVLSPRQCW--------------NRLKEEFVDLLIKPKSGAFSWLNELIWRE 289 LSPYL G LS R+ + NR EE L ++ + RE Sbjct: 257 LLSPYLHFGELSVRKVFHLVRMKQLVWSNEGNRAAEESCTLFLR----------SIGLRE 306 Query: 290 FYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWM 349 + R+L +P KP + W + + W+QG TG+P++DA MR+L GW+ Sbjct: 307 YSRYLSFNHP-CSHEKPLLAHLRFFPWVINECYFKIWRQGRTGYPLVDAGMRELWATGWL 365 Query: 350 HNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIF 409 H+R+R++ +SF VK L + WR G +YF LLD DL S+ GWQ+ + + D RI Sbjct: 366 HDRIRVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGSLPDGRELDRID 425 Query: 410 NPTIQGKRFDPQGTFIRHWLPELNNVPTQYIH----APHSWLDKNDLSL--NYPLPIV 461 NP ++G +FDP G ++R WLPEL +PT++IH AP S L + L NYPLPIV Sbjct: 426 NPQLEGYKFDPHGEYVRRWLPELARLPTEWIHHPWDAPASVLQAAGVELGSNYPLPIV 483 >gi|115458700|ref|NP_001052950.1| Os04g0452100 [Oryza sativa Japonica Group] gi|113564521|dbj|BAF14864.1| Os04g0452100 [Oryza sativa Japonica Group] gi|218194950|gb|EEC77377.1| hypothetical protein OsI_16111 [Oryza sativa Indica Group] Length = 700 Score = 176 bits (446), Expect = 8e-42, Method: Compositional matrix adjust. Identities = 148/478 (30%), Positives = 225/478 (47%), Gaps = 42/478 (8%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 +VW R DLR+ DN AL AA +V+ ++ PE+ + ++ SL + Sbjct: 21 VVWFRRDLRVEDNPALAAAARAG-GEVVPAYVWAPEEDGPYYPGRVSRWWLSQSLKHLDA 79 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYE-INEVRRDKLLEKRLQH 129 SL + G + S D++ L T+LF+N Y+ I+ VR +L E Sbjct: 80 SLRRLGAGKLVTRRSA--DAVVALLQLVRDTGATRLFFNHLYDPISLVRDHRLKEMMAAE 137 Query: 130 RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189 +I +SF+ +L P +++ Q + ++ PF + LP I +G ++ Sbjct: 138 GIIVQSFNADLLYEPWEVVDDEGQSFTMFAPFWNRCLSMPYDPAAPLLPPKRIN-SGDLS 196 Query: 190 --PSNIPRFFDYPFQAIDPMFP----IGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS 243 PS+ F D + + + G QNA L F + +Y R TS Sbjct: 197 MCPSDDLIFEDDSERGSNALLARAWSPGWQNADKALTAFLNGPLIHYSVNRKKADSASTS 256 Query: 244 QLSPYLSIGVLSPRQCW--------------NRLKEEFVDLLIKPKSGAFSWLNELIWRE 289 LSPYL G LS R+ + NR EE L ++ + RE Sbjct: 257 LLSPYLHFGELSVRKVFHLVRMKQLVWSNEGNRAAEESCTLFLR----------SIGLRE 306 Query: 290 FYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWM 349 + R+L +P KP + W + + W+QG TG+P++DA MR+L GW+ Sbjct: 307 YSRYLSFNHP-CSHEKPLLAHLRFFPWVINECYFKIWRQGRTGYPLVDAGMRELWATGWL 365 Query: 350 HNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIF 409 H+R+R++ +SF VK L + WR G +YF LLD DL S+ GWQ+ + + D RI Sbjct: 366 HDRIRVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGSLPDGRELDRID 425 Query: 410 NPTIQGKRFDPQGTFIRHWLPELNNVPTQYIH----APHSWLDKNDLSL--NYPLPIV 461 NP ++G +FDP G ++R WLPEL +PT++IH AP S L + L NYPLPIV Sbjct: 426 NPQLEGYKFDPHGEYVRRWLPELARLPTEWIHHPWDAPASVLQAAGVELGSNYPLPIV 483 >gi|21740729|emb|CAD40850.1| OSJNBa0086B14.23 [Oryza sativa Japonica Group] gi|116310174|emb|CAH67187.1| H0815C01.8 [Oryza sativa Indica Group] Length = 693 Score = 176 bits (446), Expect = 8e-42, Method: Compositional matrix adjust. Identities = 148/478 (30%), Positives = 225/478 (47%), Gaps = 42/478 (8%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 +VW R DLR+ DN AL AA +V+ ++ PE+ + ++ SL + Sbjct: 14 VVWFRRDLRVEDNPALAAAARAG-GEVVPAYVWAPEEDGPYYPGRVSRWWLSQSLKHLDA 72 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYE-INEVRRDKLLEKRLQH 129 SL + G + S D++ L T+LF+N Y+ I+ VR +L E Sbjct: 73 SLRRLGAGKLVTRRSA--DAVVALLQLVRDTGATRLFFNHLYDPISLVRDHRLKEMMAAE 130 Query: 130 RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189 +I +SF+ +L P +++ Q + ++ PF + LP I +G ++ Sbjct: 131 GIIVQSFNADLLYEPWEVVDDEGQSFTMFAPFWNRCLSMPYDPAAPLLPPKRIN-SGDLS 189 Query: 190 --PSNIPRFFDYPFQAIDPMFP----IGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS 243 PS+ F D + + + G QNA L F + +Y R TS Sbjct: 190 MCPSDDLIFEDDSERGSNALLARAWSPGWQNADKALTAFLNGPLIHYSVNRKKADSASTS 249 Query: 244 QLSPYLSIGVLSPRQCW--------------NRLKEEFVDLLIKPKSGAFSWLNELIWRE 289 LSPYL G LS R+ + NR EE L ++ + RE Sbjct: 250 LLSPYLHFGELSVRKVFHLVRMKQLVWSNEGNRAAEESCTLFLR----------SIGLRE 299 Query: 290 FYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWM 349 + R+L +P KP + W + + W+QG TG+P++DA MR+L GW+ Sbjct: 300 YSRYLSFNHP-CSHEKPLLAHLRFFPWVINECYFKIWRQGRTGYPLVDAGMRELWATGWL 358 Query: 350 HNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIF 409 H+R+R++ +SF VK L + WR G +YF LLD DL S+ GWQ+ + + D RI Sbjct: 359 HDRIRVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGSLPDGRELDRID 418 Query: 410 NPTIQGKRFDPQGTFIRHWLPELNNVPTQYIH----APHSWLDKNDLSL--NYPLPIV 461 NP ++G +FDP G ++R WLPEL +PT++IH AP S L + L NYPLPIV Sbjct: 419 NPQLEGYKFDPHGEYVRRWLPELARLPTEWIHHPWDAPASVLQAAGVELGSNYPLPIV 476 >gi|86605025|ref|YP_473788.1| deoxyribodipyrimidine photolyase [Synechococcus sp. JA-3-3Ab] gi|86553567|gb|ABC98525.1| deoxyribodipyrimidine photolyase [Synechococcus sp. JA-3-3Ab] Length = 488 Score = 176 bits (445), Expect = 1e-41, Method: Compositional matrix adjust. Identities = 144/501 (28%), Positives = 235/501 (46%), Gaps = 57/501 (11%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGIS-----ARQSHFIYASL 65 L+W R DLR+ D++ L AC + +I ++ P + + ++ F+ SL Sbjct: 4 LLWFRTDLRLLDHQPLTRACQQG-SFLIPLYCLDPRHFGRTAFGFPKTGPFRAQFLLESL 62 Query: 66 LQVQKSLSQKG--IVFQYHQCSNFDDSI--EWLDSYCLQQRVTKLFYNRQYEINEVRRDK 121 +++ L +G +V + Q ++ EW V ++ + + E + Sbjct: 63 ADLRQQLRARGSDLVIRQGQPEQVIPALAREW--------GVKAVYAHEEVGTEEEAVAR 114 Query: 122 LLEKRLQHRVICKSFD-DSVLLPPGSILNHALQMYKVYTPFR-----KALIQNLVQADLR 175 L++ LQ I + L P + + +V+T FR KA I+ + Sbjct: 115 ALQQALQPLGIPLHLEWGHTLYHPADLPFALADLPEVFTRFRQQVEAKAAIRAPLPIPSL 174 Query: 176 SLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFC--KEKVYYYVEQ 233 P + T + + P ++ G A L+ + +++ Y E Sbjct: 175 PPLPPGLDPGPLPTLAELGLSLPPPDPRARFVYAGGSTAAQARLQTYIWDLDRLRVYKET 234 Query: 234 RD-IPAIQGTSQLSPYLSIGVLSPRQCW---NRLKEEFVDLLIKPKSGAFSWLN-ELIWR 288 R+ + +S+LS +L++G LSPR + R +EE V ++ + WL EL+WR Sbjct: 235 RNGMLDPNDSSRLSAWLALGCLSPRTVYAEVKRYEEERV------RNESTYWLVFELLWR 288 Query: 289 EFYRHLMA------FYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQ 342 +++R ++A F P+ G P I W +D QAW +G TG+P++DA MR+ Sbjct: 289 DYFRFILAKHGAKLFCPAGIQGIP-------IPWQQDGDRFQAWCRGETGYPLVDANMRE 341 Query: 343 LNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDS 402 L G+M NR R ASFL K+L +DWR+G E+F S L+D D+ASN G W + A GND+ Sbjct: 342 LAATGFMSNRGRQNVASFLTKNLGIDWRLGAEWFESLLIDYDVASNYGNWNYTAGVGNDA 401 Query: 403 VPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND------LSLNY 456 FR F+ Q + +DPQG ++RHWLPEL +P IH P+ L ++Y Sbjct: 402 RG-FRYFHIPKQSRDYDPQGHYLRHWLPELAGIPGDKIHEPYRLSAAEQKQFGVRLGVDY 460 Query: 457 PLPIVDHKKACHHTLNQYYAA 477 P P+VD K+ + Y AA Sbjct: 461 PRPVVDLGKSLQASRRAYEAA 481 >gi|126658972|ref|ZP_01730114.1| probable bacterial cryptochrome [Cyanothece sp. CCY0110] gi|126619770|gb|EAZ90497.1| probable bacterial cryptochrome [Cyanothece sp. CCY0110] Length = 486 Score = 175 bits (443), Expect = 2e-41, Method: Compositional matrix adjust. Identities = 151/505 (29%), Positives = 244/505 (48%), Gaps = 65/505 (12%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKV------IAVFIATPEQWRQHGISARQSHFIYAS 64 L+W RNDLRI D++ LY D + I F T + + G + F+ S Sbjct: 7 LIWYRNDLRIHDHEPLYQGIKEGDLVIPFYCFDIRQFQTTSYAFPKTG--NFRGQFLLES 64 Query: 65 LLQVQKSLSQKG---IVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDK 121 + +++SL G IV + + + I+ L+ + ++++ + E + +K Sbjct: 65 VANLRQSLQDLGSDLIVRKGYPEKIIPELIKELE-------IDAVYFHEEVTSEETKVEK 117 Query: 122 LLEKRLQH-RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVP 180 +++ L+ +V F + L + Q+ +V+T FRK + +N +L P Sbjct: 118 KVKQALKPLKVKVPGFWGATLYHWNDLPFEVNQLPEVFTSFRKKVEKNSTVNP--TLITP 175 Query: 181 AIRLTGP-VTPSNIPRFFDYPFQAIDP------MFPIGEQNALHILRKFCKEK--VYYYV 231 L+ P V NIP + + D F GE + L+ + E+ + Y Sbjct: 176 RKLLSLPDVEIGNIPSLEELGLKKSDSDSRGVLNFKGGETAGIKRLQDYFWERNCLKEYK 235 Query: 232 EQRD-IPAIQGTSQLSPYLSIGVLSPRQCWNRL---KEEFVDLLIKPKSGAFSWL-NELI 286 E R+ + +S+ SP+L+ G LSPR + + +EE V K+ + WL EL+ Sbjct: 236 ETRNGMLGADYSSKFSPWLAHGCLSPRYIYEEVQKYEEERV------KNNSTYWLIFELL 289 Query: 287 WREFYRHLMA------FYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAM 340 WR+++R + A FY S G IPW E ++D +L W++G TG+P++DA M Sbjct: 290 WRDYFRFICAKHGNKIFYKSGLQGLD-IPWKE----DQDRFIL--WQEGKTGYPLVDANM 342 Query: 341 RQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGN 400 R++ G+M NR R ASFL K+L ++W +G E+F S L+D D+ SN G W + A GN Sbjct: 343 REIAATGFMSNRGRQNVASFLTKNLGINWIMGAEWFESLLIDYDVCSNYGNWNYTAGVGN 402 Query: 401 DSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND--------L 452 D+ FR FN Q K +D +G ++RHWLPEL +P IH P W D + Sbjct: 403 DARG-FRYFNIPKQSKDYDSKGDYLRHWLPELKMIPGDKIHEP--WKLSQDEQKRYNVRI 459 Query: 453 SLNYPLPIVDHKKACHHTLNQYYAA 477 ++YP P+VD K+ Y +A Sbjct: 460 GVDYPKPVVDFFKSVKANEKVYNSA 484 >gi|330814060|ref|YP_004358299.1| deoxyribodipyrimidine photolyase [Candidatus Pelagibacter sp. IMCC9063] gi|327487155|gb|AEA81560.1| deoxyribodipyrimidine photolyase [Candidatus Pelagibacter sp. IMCC9063] Length = 184 Score = 175 bits (443), Expect = 2e-41, Method: Compositional matrix adjust. Identities = 80/169 (47%), Positives = 112/169 (66%), Gaps = 6/169 (3%) Query: 312 EKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRI 371 +K W +D L+ WKQG TG+PI+DA MR+L+ GWMHNR+RMITASFLVK L ++W Sbjct: 11 DKFNWVRDDAKLKKWKQGKTGYPIVDAGMRELSETGWMHNRVRMITASFLVKHLRINWVE 70 Query: 372 GEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPE 431 GE++F LLD ++ +N GWQW A G D+ PYFRIFNP +QG++FD +G +++ W+ E Sbjct: 71 GEKHFRDCLLDFNVPNNVAGWQWVAGCGADAAPYFRIFNPILQGEKFDSEGMYVKKWVKE 130 Query: 432 LNNVPTQYIHAPHSWLDKN------DLSLNYPLPIVDHKKACHHTLNQY 474 LN +P +YIH P + +L NY PIV+H +A + L + Sbjct: 131 LNPIPKKYIHKPWEMPEDEQSKVNFNLKKNYYAPIVNHAEARNSALEAF 179 >gi|302799264|ref|XP_002981391.1| hypothetical protein SELMODRAFT_114313 [Selaginella moellendorffii] gi|300150931|gb|EFJ17579.1| hypothetical protein SELMODRAFT_114313 [Selaginella moellendorffii] Length = 559 Score = 175 bits (443), Expect = 2e-41, Method: Compositional matrix adjust. Identities = 141/488 (28%), Positives = 235/488 (48%), Gaps = 36/488 (7%) Query: 6 AMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASL 65 + + +LVW R DLR+ DN AL AA N+ V+ +FI P + + ++ SL Sbjct: 4 SKACNLVWFRRDLRVEDNPALLAA-ANAPGVVLPIFIWCPAEEGEFQPGRHSRWWLKQSL 62 Query: 66 LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQY-EINEVRRDKLLE 124 + + SL+ G + +D++ L + T++F N Y + V RD+ ++ Sbjct: 63 IHLDASLASYGCSLLLQKG---NDTLSVLVNIARATGSTQIFCNHLYADPITVARDRRVK 119 Query: 125 KRL-QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADL------RSL 177 +RL ++ + +F+ L P I + + + F ++ + D+ R Sbjct: 120 QRLLEYGIFVHNFNCDTLHEPWEIYDEQGHAFTTFAGFWNRFLRTRFEPDMPDSSQARIF 179 Query: 178 P----VPAIRLTGPV-TPSNIPRFF--DYPFQAIDPMFPI----GEQNALHILRKFCKEK 226 P + I G + TP +I D ++ + + G ++A L+ F Sbjct: 180 PYREYLDVISFAGNLPTPCSIEELCLEDESEKSSNELLARTWSPGCKHANDALQAFLVAP 239 Query: 227 VYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWN--RLKEEFVDLLIKPKSGAFSWLNE 284 + Y R+ TS LSPYL G LS R+ +N R K+ + L P+ A +L Sbjct: 240 LNDYTTSRET-TDNSTSHLSPYLHFGELSIRKLYNCIRSKQRDEEQLFCPRRNAHLFLRA 298 Query: 285 LIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLN 344 + RE+ R++ +P + W+ D +AWK G TG+P++DAAMR+L Sbjct: 299 IGLREYSRYISFHFPFTQEQSLL----KNFPWSNDEIHFKAWKLGKTGYPLVDAAMRELW 354 Query: 345 TIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVP 404 + GW+H +LR++T+SFL+K L + W G +YF LLD DL S+ GW++ + D Sbjct: 355 STGWLHCKLRVVTSSFLIKFLQLPWTWGIKYFWDTLLDADLESDILGWKYVSGCLTDGHE 414 Query: 405 YFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHS------WLDKNDLSLNYPL 458 R+ +P +G + D +G ++R WLPEL+ +P Q+IH P+S +L NYP Sbjct: 415 LDRVLDPHEEGCKLDSKGEYVRRWLPELSRLPNQWIHHPYSAPVSRLQAAGVELGTNYPK 474 Query: 459 PIVDHKKA 466 PIVD + A Sbjct: 475 PIVDMEVA 482 >gi|77963980|gb|ABB13331.1| cryptochrome 1b [Hordeum vulgare subsp. vulgare] gi|77963982|gb|ABB13332.1| cryptochrome 1b [Hordeum vulgare subsp. vulgare] gi|77963984|gb|ABB13333.1| cryptochrome 1b [Hordeum vulgare subsp. vulgare] Length = 712 Score = 174 bits (442), Expect = 2e-41, Method: Compositional matrix adjust. Identities = 150/478 (31%), Positives = 231/478 (48%), Gaps = 32/478 (6%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 +VW R DLR+ DN AL AA + +V+ ++ +PE+ + ++ SL ++ Sbjct: 18 VVWFRRDLRVEDNPALAAAARTA-GEVVPAYVWSPEEDGPYFPGRVSRWWLSQSLKHLEA 76 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYE-INEVRRDKLLEKRLQH 129 SL + G + S DS+ L T LF+N Y+ I+ VR +L E Sbjct: 77 SLHRLGAGKLVTRRSA--DSVAALLQLVRDTGATHLFFNHLYDPISLVRDHRLKEMLTSE 134 Query: 130 RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189 ++ +SF+ +L P + + Q + ++ PF + LP I +G ++ Sbjct: 135 GIVVQSFNADLLYDPWEVNDDDGQPFNMFMPFWNRCLSMPYDPPAPLLPPKRIN-SGDLS 193 Query: 190 --PSNIPRFFDYPFQAIDPMFP----IGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS 243 PS+ F D + + + G QNA L F + Y R TS Sbjct: 194 MCPSDDLIFEDESERGSNALLARAWSPGWQNADKALSAFLNGPLIDYSVNRKKADSANTS 253 Query: 244 QLSPYLSIGVLSPRQCWN--RLKEEFVDLLIKPKSGAFS-------WLNELIWREFYRHL 294 LSPYL G LS R+ ++ R+K+ L+ G + +L + RE+ R+L Sbjct: 254 LLSPYLHFGELSVRKVFHLVRMKQ-----LVWSNEGNHAAEESCTLFLRSVGLREYSRYL 308 Query: 295 MAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLR 354 +P KP + W D + W+QG TG+P++DA MR+L GW+H+R+R Sbjct: 309 CFNHP-CSHEKPLLAHLRFFPWVVDESTFKFWRQGRTGYPLVDAGMRELWATGWLHDRIR 367 Query: 355 MITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQ 414 ++ +SF VK L + WR G +YF LLD DL S+ GWQ+ + + DS I NP ++ Sbjct: 368 VVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGSLPDSRELDHIDNPQLE 427 Query: 415 GKRFDPQGTFIRHWLPELNNVPTQYIH----APHSWLDKNDLSL--NYPLPIVDHKKA 466 G +FDP G ++R WLPEL +PT++IH AP S L + L NYPLPIV+ A Sbjct: 428 GYKFDPHGEYVRRWLPELARLPTEWIHHPWDAPASVLQAAGVELGSNYPLPIVELDTA 485 >gi|227344531|gb|ACP27856.1| blue light photoreceptor [Fragaria vesca] gi|270303922|gb|ACZ71184.1| blue light photoreceptor [Fragaria vesca] Length = 645 Score = 174 bits (441), Expect = 3e-41, Method: Compositional matrix adjust. Identities = 141/483 (29%), Positives = 226/483 (46%), Gaps = 51/483 (10%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHF-IYASLLQVQ 69 +VW R DLRI DN AL AA D V V+I P+ H R S + + SL + Sbjct: 8 IVWFRRDLRIEDNPALAAAAR--DGAVFPVYIWCPKD-EGHFYPGRVSRWWLKQSLAHLD 64 Query: 70 KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQ-RVTKLFYNRQYE-INEVRRDKLLEKRL 127 +SL G + + ++ LD C+Q TK+ +N Y+ ++ VR + K + Sbjct: 65 QSLKSLGAQLALIKTDSTVSAL--LD--CIQAIGATKVVFNHLYDPVSLVRDHNIKGKLV 120 Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSL--PVPAIRLT 185 + + +S++ +L P + + Q + + + + ++ +L + P ++ T Sbjct: 121 ELGISVQSYNADLLHEPWEVYDAKGQTFTTFKEYWDKCLN--MERELVTFLPPWKLLQAT 178 Query: 186 GPVTPSNIPRFF------DYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAI 239 G V ++ + + G A L +F + Y + R Sbjct: 179 GMVAKYSLEELGLENETEKSSNALLGRAWTPGWSQADKALTEFFDVHLLDYAKNRTKLGG 238 Query: 240 QGTSQLSPYLSIGVLSPRQCW--------------NRLKEEFVDLLIKPKSGAFSWLNEL 285 TS LSPYL G +S R+ + N L EE V L ++ + Sbjct: 239 NSTSLLSPYLHFGEVSVRKVFQLARMKQILFAKEGNSLGEESVTLFLRA----------I 288 Query: 286 IWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNT 345 REF R++ +P K + W D +AW+QG TG+P++DA MR+L Sbjct: 289 GLREFSRYICFNFP-FTHEKLLLSNLRFFPWKADQGRFKAWRQGRTGYPLVDAGMRELWA 347 Query: 346 IGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPY 405 GW+HNR+R+I +SF VK LL+ W+ G +YF L+D DL S+ GWQ+ + + D Sbjct: 348 TGWIHNRIRVIVSSFAVKVLLLPWKWGMKYFWDTLMDADLESDILGWQYISGSLPDGHEL 407 Query: 406 FRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDK------NDLSLNYPLP 459 R+ +P +QG +FDP G ++RHWLPEL +PT++IH P D +L +NYP P Sbjct: 408 ERLDSPEVQGSKFDPDGEYVRHWLPELARLPTEWIHHPWDTPDNVLKVSGVELGVNYPRP 467 Query: 460 IVD 462 I++ Sbjct: 468 IIE 470 >gi|161138116|gb|ABX58029.1| cryptochrome 2 [Triticum aestivum] Length = 650 Score = 174 bits (441), Expect = 3e-41, Method: Compositional matrix adjust. Identities = 139/474 (29%), Positives = 229/474 (48%), Gaps = 30/474 (6%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 +VW R DLRI DN AL AA D V+ VFI P + + ++ SL + + Sbjct: 8 VVWFRRDLRIDDNPALAAAAR--DGAVLPVFIWCPAEEGRFYTGRCSRWWLKESLAHLAR 65 Query: 71 SLSQKG--IVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYE-INEVRRDKLLEKRL 127 SL G +V Q + ++ +DS T++ Y Y+ I+ VR DK+ + L Sbjct: 66 SLQALGCPLVLIRAQ-TTLAALLQCVDSIG----ATRVVYIHLYDPISLVRDDKIKNELL 120 Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQ-----ADLRSLPVPAI 182 + +SF+ +L P + + + + + + ++ + A R +PV I Sbjct: 121 GLGISMQSFNGDLLYEPWEVYDENGLPFTTFKKYWEKCMKLHIDISPSLAPWRLVPVSGI 180 Query: 183 RLTGPVTPSNIPRFFDYPFQAIDPMFPI----GEQNALHILRKFCKEKVYYYVEQRDIPA 238 + N+ ++ + + G +NA L F + Y + R A Sbjct: 181 ENICSSSIDNLGLESSKDEESSNALLSRAWSPGWRNAEKTLEDFVSHGLLDYSKDRMKVA 240 Query: 239 IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFS----WLNELIWREFYRHL 294 TS SPYL G +S R+ + ++ + + + KSGA +L + RE+ R+L Sbjct: 241 GTTTSLSSPYLHYGEVSVRKIYQLVRVQQIKWENEGKSGAGESDNLFLLSIGLREYSRYL 300 Query: 295 MAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLR 354 +P + + + W D ++W+QG TG+P++DA MR+L GW HNR+R Sbjct: 301 CFNFP-FTRERSLLGNLKHYPWRADEDRFKSWRQGMTGYPLVDAGMRELWATGWTHNRIR 359 Query: 355 MITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQ 414 +I +SF VK L + W G +YF LLD D+ S+ GWQ+ + + D R+ NP +Q Sbjct: 360 VIVSSFAVKFLQIPWTWGMKYFWDVLLDADIESDILGWQYISGSLPDGHELGRLDNPEVQ 419 Query: 415 GKRFDPQGTFIRHWLPELNNVPTQYIH----APHSWLD--KNDLSLNYPLPIVD 462 G+++DP G ++R W+PEL +P ++IH AP S L+ +L NYP+PIV+ Sbjct: 420 GQKYDPDGEYVRTWIPELARMPGEWIHHPWDAPSSILEVAGVELGFNYPMPIVE 473 >gi|255964971|gb|ACU44658.1| cryptochrome 2B [Medicago sativa] Length = 484 Score = 174 bits (440), Expect = 4e-41, Method: Compositional matrix adjust. Identities = 111/379 (29%), Positives = 196/379 (51%), Gaps = 20/379 (5%) Query: 102 RVTKLFYNRQYE-INEVRRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTP 160 + K+ +N Y+ ++ VR + EK ++ + +S++ +L P I + + + + P Sbjct: 48 QAEKVVFNHLYDPVSLVRDHNIKEKLVELGISVQSYNGDLLHEPWHIYDESGHAFTTFDP 107 Query: 161 FRKALIQNLVQADLRSLPVPAIRLTGPVTPSNIPRF-----FDYPFQAI-DPMFPIGEQN 214 F +Q ++ P I G V +I + + A+ + G Sbjct: 108 FWNRCLQMQMKTYSPIPPCQLILAQGKVEKHSIEQLGLENELETSSNALLARAWSPGWSK 167 Query: 215 ALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFV-----D 269 + L +F + + +Y + R + TS LSPY+ G LS R+ + + + + Sbjct: 168 SDKALTEFVENNLIHYTKSRLNLGVDSTSLLSPYIHFGELSVRKVFQLARTKQILWKNEG 227 Query: 270 LLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQG 329 ++ +S F +L + +RE+ R+L +P + +P + + WN D + +AW+ G Sbjct: 228 NIVGEESATF-FLKAIGFREYSRYLCFSFP-FTVERPLLGNLKFFPWNTDPSMFKAWRLG 285 Query: 330 YTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNN 389 TG+P++DA MR+L GW+HN++R+I +SF VK LL+ W+ G +YF LLD DL S+ Sbjct: 286 RTGYPLVDAGMRELWATGWIHNKMRVIVSSFAVKMLLIPWKWGMKYFWDTLLDADLESDI 345 Query: 390 GGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIH----APHS 445 GWQ+ + + D R+ +P IQG ++D +G ++R WLPEL +PT++IH AP + Sbjct: 346 LGWQYISGSLPDGHELERLDDPEIQGTKYDSEGEYVRQWLPELARIPTEWIHHPWNAPPT 405 Query: 446 WLDKNDLSL--NYPLPIVD 462 L + + L NYP PI+D Sbjct: 406 VLRASGVELGQNYPKPIID 424 >gi|321475718|gb|EFX86680.1| hypothetical protein DAPPUDRAFT_307800 [Daphnia pulex] Length = 520 Score = 174 bits (440), Expect = 4e-41, Method: Compositional matrix adjust. Identities = 157/496 (31%), Positives = 232/496 (46%), Gaps = 68/496 (13%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWR--------QHGISARQSHF 60 V + RNDLR DN+ + A H S V+ ++ P + + GI ++ F Sbjct: 11 VAICLFRNDLRYHDNEVI-ALAHKSADFVLPLYCFDPRHFEGTHHYKFPKTGIF--RTQF 67 Query: 61 IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120 + S+ +++L ++G S ++++ + +VT + Q E+ + D Sbjct: 68 LLESVEDFRQTLVKRGSNLMIVH-SKPEEALLKIFKSLTGLKVTLIL---QTEVTKEETD 123 Query: 121 KLLEKRLQHRVICKSFDDSVLLPPGSILNHA----LQMYKV---YTPFRKALIQNLVQAD 173 +EKRLQ IC+ S + GS L H Q+ V YT FRK + + L Sbjct: 124 --VEKRLQK--ICQEIKASYINCWGSTLYHKGDLPFQINHVPDSYTGFRKDVEEKLRIRP 179 Query: 174 LRSLP---VPAIRLTGPVTPSNIPRF----FDYPFQAIDPMFPI--GEQNALHILRKFC- 223 S+P P + N+P P FP GE AL L+ + Sbjct: 180 EISMPDKMKPVPTFAHEIPWGNLPTIEALNSTKPIPNSSSAFPFNGGETAALLRLKSYLW 239 Query: 224 -KEKVYYYVEQRD-IPAIQGTSQLSPYLSIGVLSPRQC-WNRLKEEFVDLLIKPKSGAFS 280 V Y E R+ + +++ S +LS G LSPR+ W K E L + K+ + Sbjct: 240 DTNAVAQYKETRNGLIGSDYSTKFSSWLSHGCLSPRRIHWELEKYE----LQRTKNQSTY 295 Query: 281 WLN-ELIWREFYRHLMA------FYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGF 333 W+ EL+WR++++ + FYP+ G+ + +W KD L +AW+ G TG Sbjct: 296 WVRFELLWRDYFKFVSMKYGDRIFYPNGMKGR-------RQQWKKDMELFKAWQMGKTGV 348 Query: 334 PIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQ 393 P +DA MR+L GWM NR R ASFLVKDLL+DWR+G E+F S LLD D+ SN G W Sbjct: 349 PFVDANMRELLATGWMSNRGRQNVASFLVKDLLLDWRLGAEWFESLLLDHDVCSNYGNWN 408 Query: 394 WAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWL------ 447 + A GND R FN Q +D +G +IR W+PEL +P IH+P W+ Sbjct: 409 YVAGIGNDPREN-RKFNMIKQSMDYDLEGNYIRMWVPELREIPGSKIHSP--WMLSSGAL 465 Query: 448 --DKNDLSLNYPLPIV 461 K L NYP P+V Sbjct: 466 SAAKIRLGDNYPNPVV 481 >gi|302790279|ref|XP_002976907.1| hypothetical protein SELMODRAFT_106065 [Selaginella moellendorffii] gi|300155385|gb|EFJ22017.1| hypothetical protein SELMODRAFT_106065 [Selaginella moellendorffii] Length = 499 Score = 174 bits (440), Expect = 4e-41, Method: Compositional matrix adjust. Identities = 139/494 (28%), Positives = 231/494 (46%), Gaps = 53/494 (10%) Query: 8 SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQH------GISARQSHFI 61 V ++W RNDLRI DN+AL+ A +S + V+ V+ P + ++ F+ Sbjct: 23 GVSIMWFRNDLRIVDNEALFKAWASSSS-VLPVYCVDPRHFGTTHYFKFPKTGELRAQFL 81 Query: 62 YASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDK 121 SL+ ++K+L ++G+ + + L V + + Y E ++ Sbjct: 82 LESLVDLKKNLKKRGLDLVIRSGN---------PEFILPLLVEAVGAHTIYAQEETCSEE 132 Query: 122 L-LEKRLQHRVICKSFDDSVLLPPGSILNH-------ALQMYKVYTPFRKALIQNLVQAD 173 L +EK ++ + K+ + L G+ + H ++ VYT FRKA V++ Sbjct: 133 LQVEKAVKKSIGTKA---KLELVWGTTMYHLNDLPFTTARLPDVYTQFRKA-----VESS 184 Query: 174 LRSLPVPAIRLT-GPVTPS---------NIPRFFDYPFQAIDPM------FPIGEQNALH 217 R P + T GP+ S +P D + + + F GE A+ Sbjct: 185 SRVRPCLKLPQTLGPLPDSLGEKVGDLDKVPNLSDLGLRPREQVSLAAMQFTGGETAAIQ 244 Query: 218 ILRKF--CKEKVYYYVEQRD-IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKP 274 L ++ K + Y E R+ + +++ SP+L+ G +SPR + ++ Sbjct: 245 RLCEYFWTKNCLRNYKETRNGMLGADYSTKFSPWLASGSISPRFIYEEASIKYEKERTAN 304 Query: 275 KSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFP 334 S + L ELIWR+++R L Y + W++D L +AW+ G TG+P Sbjct: 305 NS-TYWVLFELIWRDYFRFLSMKYGNSIFHLEGPRKVRTKSWSQDKTLFEAWRTGTTGYP 363 Query: 335 IIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQW 394 +IDA MR+L G+M NR R I SFLV+D+ +DWR+G E+F S LLD D SN G W + Sbjct: 364 LIDANMRELYATGFMSNRGRQIVCSFLVRDMGIDWRMGAEWFESCLLDYDPCSNYGNWTY 423 Query: 395 AASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSL 454 A GND R F+ Q + +DP G+++ HW+P+L +PT H+P K + L Sbjct: 424 GAGVGNDPRED-RYFSIPKQAQTYDPDGSYVSHWIPQLQELPTDARHSPKVGYLKKIVPL 482 Query: 455 NYPLPIVDHKKACH 468 + P +K + + Sbjct: 483 RFSNPGRTYKTSAN 496 >gi|186686938|ref|YP_001870131.1| DNA photolyase, FAD-binding [Nostoc punctiforme PCC 73102] gi|186469290|gb|ACC85090.1| DNA photolyase, FAD-binding [Nostoc punctiforme PCC 73102] Length = 516 Score = 174 bits (440), Expect = 4e-41, Method: Compositional matrix adjust. Identities = 140/476 (29%), Positives = 224/476 (47%), Gaps = 38/476 (7%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 +HL+W R DLR+TDN+ + ++ N DA+V+ FI P + + + F++ SL ++ Sbjct: 1 MHLLWFRRDLRLTDNEIVTSSSGN-DARVLPFFIIDPWFYTWADVGTARVRFLFESLEKL 59 Query: 69 Q---KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEIN-EVRRDKLLE 124 + LS + +F+ + + L + KLF+NR ++ + RDK + Sbjct: 60 NSNLQKLSSRLYLFEGNSTGIVQELTRQLTERGYK---PKLFFNRDVQVEYGINRDKTIV 116 Query: 125 KRLQHRVICKSFDDSVLLPPGSILNHALQMYKVY---TPFRKALIQNLVQADLRSLPVPA 181 + + + L + + Y Y + ++ I N Q L +LP Sbjct: 117 DFYKQLNLDYHIGLNNFLQSAEQRDEWVNEYYTYQRQSQYKTPAIINTPQITL-NLP--- 172 Query: 182 IRLTGPVTPSNIPRFFDYPFQAIDPM-FPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ 240 +LT RF+ A++ + FP GE A L F K++ Y Y + P + Sbjct: 173 -QLTFEELKQKYHRFW-----AVEKVYFPGGETQAQAQLDSFLKKRYYGYHWKLSRPMLS 226 Query: 241 ---GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFS---WLNELIWREFYRHL 294 TS LSP+L+ G +S R + K L +PK+ FS + + L W + + Sbjct: 227 QLGATSHLSPHLTFGTISTRTVYQSTKALAEQLKTQPKA-EFSLKAFRDRLRWHDSFTQR 285 Query: 295 MAFYPSVCMGKPFIP----WTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMH 350 + F+P + + +T + L QAW+QG TGFP++DA+MRQL T+GWM+ Sbjct: 286 LYFHPEIAYTNRYREFDKLYTPETLSGAKQELYQAWQQGMTGFPLVDASMRQLQTMGWMN 345 Query: 351 NRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFN 410 R+R + A+FL + V W G +++M+ L+DGDLA +N WQ A N FRI+N Sbjct: 346 FRMRAMCATFLTINCGVSWHHGAKHYMNYLVDGDLAIDNWQWQMQAGVTNPLSDTFRIYN 405 Query: 411 PTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKA 466 P+ DP G FI HW+PEL I +K + NYP I+D K Sbjct: 406 PSKNIAEKDPLGEFIYHWIPELRGYSLLEIEQ-----EKYIETSNYPKVILDWSKT 456 >gi|110825715|sp|Q38JU2|CRYD_SOLLC RecName: Full=Cryptochrome DASH, chloroplastic/mitochondrial; AltName: Full=Cryptochrome-3; Flags: Precursor gi|98467788|gb|ABB01166.2| cryptochrome 3 [Solanum lycopersicum] Length = 577 Score = 173 bits (439), Expect = 4e-41, Method: Compositional matrix adjust. Identities = 136/472 (28%), Positives = 226/472 (47%), Gaps = 53/472 (11%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQH------GISARQSHFIY 62 V +VW RNDLR+ DN+AL A +S+A ++ V+ P + A ++ FI Sbjct: 79 VAIVWFRNDLRVLDNEALLRAWVSSEA-ILPVYCVDPRLFGTTHYFGMPKTGALRAQFII 137 Query: 63 ASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKL 122 L ++++L ++G+ D +Y + ++ +++ EV+ +K+ Sbjct: 138 ECLNDLKRNLVKRGLDLLIQHGKPEDIVPSLAKAY----KAHTVYAHKETCSEEVKVEKM 193 Query: 123 LEKRLQHRVICKSFDDSVLLPPGSILNHALQ------MY-------------KVYTPFRK 163 + + LQ V S + PGS L+ MY VYT FRK Sbjct: 194 VTRNLQKLVSPSS--GGIGNDPGSGNTTKLELVWGSTMYHIDDLPFDCESLPDVYTQFRK 251 Query: 164 AL-----IQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQ----AIDPMFPIGEQN 214 ++ ++N + P P + G ++P+ + Q + F GE Sbjct: 252 SVEYKSKVRNCTKLPTSFGPPPEVGDWG-----HVPQVSELGLQQEKVSKGMNFVGGESA 306 Query: 215 ALHILRKFC--KEKVYYYVEQRD-IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLL 271 AL + + K+ + Y E R+ + +++ SP+L+ G LSPR + +K + L Sbjct: 307 ALGRVHDYFWKKDLLKVYKETRNGMLGADYSTKFSPWLASGSLSPRFIYEEVKRYEKERL 366 Query: 272 IKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYT 331 + L ELIWR+++R L ++ + P I W++D + AW++G T Sbjct: 367 --SNDSTYWVLFELIWRDYFRFLSIKLANLLF-QAGGPQKVNINWSQDQTMFDAWRRGQT 423 Query: 332 GFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGG 391 G+P+IDA M++L G+M NR R I SFLV+D+ +DWR+G E+F + LLD D SN G Sbjct: 424 GYPLIDANMKELAATGYMSNRGRQIVCSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGN 483 Query: 392 WQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAP 443 W + A GND R F+ Q + +DP+G F+ +WLPEL +P + H+P Sbjct: 484 WTYGAGVGNDPRED-RYFSIPKQAQNYDPEGEFVAYWLPELRALPREKRHSP 534 >gi|38037416|gb|AAR08429.1| cryptochrome 1 [Orobanche minor] Length = 679 Score = 173 bits (439), Expect = 5e-41, Method: Compositional matrix adjust. Identities = 147/494 (29%), Positives = 225/494 (45%), Gaps = 48/494 (9%) Query: 3 ATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHF-I 61 T+ +VW R DLR+ DN AL A V+ +FI PE+ H R S + + Sbjct: 2 GTSGGGCSIVWFRRDLRVEDNPALAAGVRA--GAVLPLFIWAPEE-EGHYYPGRVSRWWL 58 Query: 62 YASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYE-INEVRRD 120 SL + SL G + + DS+ L ++F+N Y+ I+ VR Sbjct: 59 KQSLSHLDISLRSLGTSLVTRRST---DSVSSLLEVIKLTGAKQIFFNHLYDPISLVRDH 115 Query: 121 KLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVP 180 + E V +SF+ +L P + + Q + + F + + + LP P Sbjct: 116 RAKEVLTAEGVAVRSFNADLLYEPWEVHDQEGQPFTTFAGFWERCLSMPYDPEAPLLP-P 174 Query: 181 AIRLTGPVT--PSNIPRFFDYPFQAIDPMFP----IGEQNALHILRKFCKEKVYYYVEQR 234 ++G ++ S+ F D + + + G NA L F + Y + R Sbjct: 175 KRIISGDLSRCTSDTLVFEDESEKGSNALLARAWSPGWSNADKALTVFTNGPLLEYSKNR 234 Query: 235 DIPAIQGTSQLSPYLSIGVLSPRQCW--------------NRLKEEFVDLLIKPKSGAFS 280 TS LSP+L G +S R+ + N+ EE ++L +K Sbjct: 235 RKADSATTSFLSPHLHFGEVSVRKIFHLARIKQVLWANEGNKAGEESINLFLK------- 287 Query: 281 WLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAM 340 + RE+ R+ M+F +P + + W D +AW+QG TG+P++DA M Sbjct: 288 ---SIGLREYSRY-MSFNHPYSHERPLLGHLKYFPWVIDEGYFKAWRQGRTGYPLVDAGM 343 Query: 341 RQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGN 400 R+L GW+H+R+R++ +SF VK L + WR G +YF LLD DL S+ GWQ+ + + Sbjct: 344 RELWATGWLHDRIRVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGSLP 403 Query: 401 DSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIH----APHSWLDKNDLSL-- 454 D RI NP G + DP G ++R WLPEL +PT++IH P S L + L Sbjct: 404 DGCELDRIDNPQFDGYKCDPNGEYVRRWLPELARLPTEWIHHPWNTPESVLQAAGIELGS 463 Query: 455 NYPLPIV--DHKKA 466 NYPLPIV D KA Sbjct: 464 NYPLPIVGIDTAKA 477 >gi|78777808|ref|YP_394123.1| deoxyribodipyrimidine photolyase [Sulfurimonas denitrificans DSM 1251] gi|78498348|gb|ABB44888.1| Deoxyribodipyrimidine photo-lyase type I [Sulfurimonas denitrificans DSM 1251] Length = 445 Score = 172 bits (437), Expect = 8e-41, Method: Compositional matrix adjust. Identities = 136/480 (28%), Positives = 216/480 (45%), Gaps = 57/480 (11%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 ++W R DLR+ DN L +V+ +FI ++ ++ FI+ LL+++ Sbjct: 4 VLWFRRDLRVKDNPLLTLG-----GEVLPIFIFDENILKELSQDDKRVTFIFHYLLKLKS 58 Query: 71 SLSQKGIVFQ---------YHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDK 121 L G+ + + S FD+ + D Y+ RD Sbjct: 59 DLQHIGLDLKIFYGTPEAVFEHLSKFDEVVASGD----------------YDSYAKSRDL 102 Query: 122 LLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPA 181 + +L R + D+ + P IL Y V+TPF K L DL+ + Sbjct: 103 HISHKLHFRYL----HDTYIFKPKEILKDDGSPYFVFTPFYKKARVALHVKDLQEKKIAQ 158 Query: 182 IRLTGP----VTPSNIPRFFDYPFQAIDPM-FPIGEQNALHILRKF--CKEKVYYYVEQR 234 L G +T +I AI+ + F N + +K K+ + Y + R Sbjct: 159 NILIGSDYEGITKVDIG--ITKLSLAIESIGFKAQNLNIIAPQKKLENFKKNISKYSQMR 216 Query: 235 DIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHL 294 D + +S LS L G +S R+ + +K + ++ +LI+R+FY + Sbjct: 217 DFLDVDISSSLSVDLRFGTISIREVLLEV--------LKLAEVSEPFIRQLIFRDFYAYA 268 Query: 295 MAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLR 354 + P V + +D A+ TG PI+DA +R+L G+MHNR+R Sbjct: 269 LFHTPHVESEN----YKYSFNGIEDKEKFIAFCSAKTGVPIVDAGVRELLKTGYMHNRVR 324 Query: 355 MITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQ 414 M+ ASF KDLL+ W+ GE +F LLD D ASN WQW+A TG D PYFRIFNP +Q Sbjct: 325 MVVASFFTKDLLLPWQWGERFFAEHLLDYDKASNVLSWQWSAGTGVDPQPYFRIFNPYLQ 384 Query: 415 GKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQY 474 K+FD + +I+ ++ EL+ + + IH +L D+ +YP PIV HK+A + + Sbjct: 385 SKKFDKEALYIKRYVSELSTIEIKNIHK-EEYLLCADIK-DYPKPIVTHKEASKRAVELF 442 >gi|3551221|dbj|BAA32809.1| blue-light photoreceptor [Adiantum capillus-veneris] gi|3551227|dbj|BAA32812.1| blue-light photoreceptor [Adiantum capillus-veneris] Length = 718 Score = 172 bits (437), Expect = 8e-41, Method: Compositional matrix adjust. Identities = 144/484 (29%), Positives = 231/484 (47%), Gaps = 33/484 (6%) Query: 6 AMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASL 65 A S +VW R DLR+ DN AL AA V+ VFI +P++ Q ++ SL Sbjct: 2 AKSCTVVWFRRDLRLEDNPALAAA--ARAGAVVPVFIWSPDEEGQFRPGRVSRWWLKQSL 59 Query: 66 LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYE-INEVRRDKLLE 124 +Q+ SL G+ N +D++ L +++ YN Y+ ++ VR ++ + Sbjct: 60 IQLDISLRSLGVSLVM---INANDTVSALLELVKTTGASQVVYNHLYDPVSLVRDHRVKQ 116 Query: 125 KRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQA-DLRSLPVPAIR 183 +Q+ + +SF+ +L P +L+ K +T F + L + S +P R Sbjct: 117 SLVQNGIQVQSFNGDLLYEPWEVLD---DHGKPFTYFESYWAKCLTMPFEPESPLLPPRR 173 Query: 184 LTGP-------VTPSNIPRFFDYPFQAIDPMFP----IGEQNALHILRKFCKEKVYYYVE 232 LT +TP + D ++ + + G NA L F Y Sbjct: 174 LTAAPAGIVHSLTPDEL-GLEDEADKSSNALLARAWAPGWSNADKALEAFLAGPFLNYSR 232 Query: 233 QRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFV----DLLIKPKSGAFSWLNELIWR 288 R TS LSP+L G +S R+ ++ ++ V D + + ++ + +R Sbjct: 233 NRHEIDGPTTSLLSPHLHFGEVSVRKVFHSVRRLQVLWAKDGSMLGEESINYFMRSIGFR 292 Query: 289 EFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGW 348 E+ R+L +P + + + W D L +AW+QG TG+P++DA MR+L GW Sbjct: 293 EYSRYLCFNFP-FTHERSLLSNLKSFPWRVDEGLFKAWRQGRTGYPLVDAGMRELWATGW 351 Query: 349 MHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRI 408 +HNR+R+I +SF VK L + WR G +YF LLD DL S+ GWQ+ + + D R+ Sbjct: 352 LHNRVRVIVSSFCVKFLQLPWRWGMKYFWDTLLDADLESDILGWQYISGSLPDGHELDRM 411 Query: 409 FNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIH----APHSWLDKNDLSL--NYPLPIVD 462 NP +G + DP G ++R WLPEL +PT++IH AP L + L NYP P+V+ Sbjct: 412 DNPQTEGYKHDPLGEYVRRWLPELVRLPTEWIHHPWDAPPGVLRAAGVELGSNYPRPVVE 471 Query: 463 HKKA 466 A Sbjct: 472 VAAA 475 >gi|294507180|ref|YP_003571238.1| deoxyribodipyrimidine photo-lyase [Salinibacter ruber M8] gi|294343508|emb|CBH24286.1| Deoxyribodipyrimidine photo-lyase [Salinibacter ruber M8] Length = 483 Score = 172 bits (437), Expect = 9e-41, Method: Compositional matrix adjust. Identities = 143/505 (28%), Positives = 219/505 (43%), Gaps = 63/505 (12%) Query: 7 MSVHLVWLRNDLRITDNKAL-YAACHNSDAKVIAVFIATPEQWRQH-----GISARQSHF 60 +S LVW+RNDLR+ D+ L YAA H +VI V+ P + +S+ ++ F Sbjct: 2 LSTALVWIRNDLRVRDHAPLRYAADHYD--QVIPVYCFDPRHFGTTMFDLPKMSSIRARF 59 Query: 61 IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120 + S+ ++ S+ G + D L Q ++ ++ E + Sbjct: 60 LRESVQDLRDSVQDLGADLVVRRGRPED----ILPELVRQTGANEVLQFQEIGGEEEDVE 115 Query: 121 KLLEKRLQHRVICKSF---------DDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQ 171 +E L+ F DD P I KVYT FRKA+ + Sbjct: 116 TAVEDALRDTGATPGFFWGKTLYHIDDVPFDGPDDIP-------KVYTNFRKAVEKKSTV 168 Query: 172 ADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQ---AIDPM----FPIGEQNALHILRKFCK 224 P + L + P +IP + F +D F GE + ++ Sbjct: 169 RPTLDAPDSLLPLPEDLNPGSIPTLDELGFDDDGTVDERGVLPFRGGESRGHDRIDEYIW 228 Query: 225 EKVY---YYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSW 281 + Y + + +++ S +L+ G ++PRQ + E + D + KS W Sbjct: 229 RGDFLKKYKATRNGLLGANYSAKFSAWLAHGCITPRQIHEEV-ERYEDQRVDNKS--TYW 285 Query: 282 LN-ELIWREFYRHLM------AFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFP 334 + ELIWR+F+ ++ F P G I+W + W G TG P Sbjct: 286 MKFELIWRDFFSYVTWKAGERLFRPGGINGN-------DIDWRYYDESFERWAAGTTGIP 338 Query: 335 IIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQW 394 +DA MR+LN G+M NR R AS L + L +DWR+G YF S+L+D D+ASN G W + Sbjct: 339 FVDANMRELNRTGYMSNRGRQNVASMLSQSLKLDWRMGAAYFESRLVDYDVASNWGNWAY 398 Query: 395 AASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND--- 451 + GND P R FN Q KR+D G ++R+WLPEL +VP +Y+H PH + Sbjct: 399 NSRVGND--PRARYFNIVKQAKRYDENGEYVRYWLPELADVPDKYVHEPHRMSHEQQKKY 456 Query: 452 ---LSLNYPLPIVDHKKACHHTLNQ 473 L +YP P+VD K N+ Sbjct: 457 GCVLGADYPKPVVDLDKTYQRIRNE 481 >gi|313231152|emb|CBY19150.1| unnamed protein product [Oikopleura dioica] Length = 251 Score = 172 bits (437), Expect = 9e-41, Method: Compositional matrix adjust. Identities = 93/247 (37%), Positives = 137/247 (55%), Gaps = 21/247 (8%) Query: 241 GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPS 300 GT+++S +L G +S R+ + R E F + + +L++R+FY + + P Sbjct: 6 GTTKMSAHLKFGTVSIREMYWRTAELFGE--------RHDLIRQLVFRDFYLKIYSHNPE 57 Query: 301 VCMGKPFIPWT-EKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITAS 359 + G E+I W+ D L AW +G TGFP++DAA RQL IGW HNR+RM+T Sbjct: 58 LQRGTALQAGVDERIPWSDDEKLWTAWCEGMTGFPLVDAAQRQLKEIGWQHNRMRMLTGC 117 Query: 360 FLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFR-IFNPTIQGKRF 418 L K ++DWR G ++F L+D D+ +N GW W +STG D+VPYFR FNP IQ K+F Sbjct: 118 VLTKYFMIDWRKGMKFFYQNLVDADVFNNTAGWGWVSSTGPDAVPYFRPPFNPWIQSKKF 177 Query: 419 DPQGTFIRHWLPELNNVPTQYIHAPHSWLD--------KNDLSLNYPLPIVDHKKACHHT 470 D +G +I+ ++PEL +V + H W D KN YP P+V H +A + Sbjct: 178 DLEGKYIKQYIPELADVSPADL---HKWGDASIRAKYKKNKKVQAYPAPVVKHDEASKNA 234 Query: 471 LNQYYAA 477 + Y A Sbjct: 235 VYLYKKA 241 >gi|15790677|ref|NP_280501.1| photolyase/cryptochrome [Halobacterium sp. NRC-1] gi|169236417|ref|YP_001689617.1| deoxyribodipyrimidine photo-lyase [Halobacterium salinarum R1] gi|10581208|gb|AAG19981.1| photolyase/cryptochrome [Halobacterium sp. NRC-1] gi|167727483|emb|CAP14271.1| deoxyribodipyrimidine photo-lyase [Halobacterium salinarum R1] Length = 462 Score = 172 bits (437), Expect = 9e-41, Method: Compositional matrix adjust. Identities = 138/484 (28%), Positives = 217/484 (44%), Gaps = 42/484 (8%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 +HL W + DLR+ DN+ L+AA V+ V++ Q G R F+ A + + Sbjct: 1 MHLYWHQRDLRVPDNRGLHAATDGD--TVVPVYVFDDTVLSQVGRPKRA--FLAAGVRAL 56 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEI-NEVRRDKLLEKRL 127 + + ++G + D+ L + + +F+ Y+ RR ++ + Sbjct: 57 RAAYRERGSDLLVREG----DAESVLPALADEFDADTVFHAAHYDAARRNRRTRVADALA 112 Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187 V D L+ P ++ + + Y +++A + PVPA P Sbjct: 113 AAGVDTAGHVDHTLVDPATLDDAYPSHSQFYDDWQQAPKPD---------PVPA-----P 158 Query: 188 VTPSNIPRFFDYPFQAIDPMFPI---GEQNALHILRKFCKEKVYYYVEQRD------IPA 238 + D+ P P+ G A L F + + Y + RD Sbjct: 159 DADALADVHDDHTLSVPAPEPPLPDAGHAAATDRLAAFLDDGIASYNDTRDDLAAAVDAP 218 Query: 239 IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFY 298 S+LSPYL+ G + R+ W + + + D + EL WRE HL+ Sbjct: 219 ASAVSRLSPYLAAGNIGVREVWAAVADAYDDATGNAARNIGKYRYELSWREQNYHLLYHT 278 Query: 299 PSVCMGKPFIPWTEKIEW-NKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMIT 357 P + + ++ + I W N D H +AW +G TG+P++DA MRQL G++HNR R + Sbjct: 279 PRLQT-ENYVSFDAPIAWQNSDDHF-EAWTRGETGYPLVDAGMRQLRAEGYVHNRPRQVV 336 Query: 358 ASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKR 417 ASFL K LLVDWR GE +F +L+D D A+N WQW ASTG D+V RIF+P Q + Sbjct: 337 ASFLTKHLLVDWRRGERHFADRLVDYDPANNAANWQWTASTGTDTVA-VRIFDPVSQMAK 395 Query: 418 FDPQGTFIRHWLPELNNV-PTQYIHAP---HSWLDKNDLSLNYPLPIVDHKKACHHTLNQ 473 +D F+ ++PEL V P + P HS ++ L+ +Y PIVD A Sbjct: 396 YDSDAAFVTEYVPELRGVDPETIVDWPTLRHSQRER--LAPDYHHPIVDRDHAYERAQRV 453 Query: 474 YYAA 477 + AA Sbjct: 454 FEAA 457 >gi|225010911|ref|ZP_03701378.1| cryptochrome, DASH family [Flavobacteria bacterium MS024-3C] gi|225004958|gb|EEG42913.1| cryptochrome, DASH family [Flavobacteria bacterium MS024-3C] Length = 427 Score = 172 bits (436), Expect = 1e-40, Method: Compositional matrix adjust. Identities = 135/437 (30%), Positives = 204/437 (46%), Gaps = 34/437 (7%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQH--GISARQSHFIYASLLQV 68 +VW N+LR+ DN L AAC N+ +V+ V+ PE+ I ++ F SLL + Sbjct: 4 IVWFTNNLRVADNPLLTAACKNNANEVVGVYCLNPEKLDGDFPKIGPFRAKFNVESLLDL 63 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128 ++SL + I F D + L Y + + L++ + + EV +K +E ++ Sbjct: 64 KRSLEELNIPFAIL----IGDPTKRLPEYINENNIGTLYFQKVWHEEEVLINKEIEAKIS 119 Query: 129 HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188 + S D LL P I ++ KV+TPFRK V+A L +P P Sbjct: 120 PNIQLVSLYDQFLLGPEIIPFELYKLPKVFTPFRKK-----VEATLE-VPAPLEVPAKQT 173 Query: 189 TPSNIPRFFDYPFQA----------IDP--MFPI--GEQNALHILRK--FCKEKVYYYVE 232 SN P F+ A ID FP GE+ A + F + V Y E Sbjct: 174 NTSNTPLFYSDALWASISKELLSIKIDSRSAFPFKGGEKAAQERIDHYFFSTDHVAQYKE 233 Query: 233 QRD-IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFY 291 R+ + + +++LS +L+ G +S R + +LK + +K + L EL+WREF+ Sbjct: 234 TRNGLIGLDYSTKLSAWLANGCISARTIYYQLKA--YEKTVKANESTYWVLFELLWREFF 291 Query: 292 RHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHN 351 +++ + + I + N D + W G T P I+A M++L+ GWM N Sbjct: 292 KYVGLKHKNDLFKSGGINHKSFAQGN-DPKVYNDWISGTTHSPFINANMKELSQTGWMSN 350 Query: 352 RLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNP 411 R R AS+ K L DWRIG YF SQL+D D+ SN W + + GND P RIFNP Sbjct: 351 RGRQNVASYWSKTLDQDWRIGATYFESQLIDYDVDSNWANWMYTSGVGND--PRDRIFNP 408 Query: 412 TIQGKRFDPQGTFIRHW 428 Q +DPQ F + W Sbjct: 409 ERQADMYDPQKAFQKLW 425 >gi|221116996|ref|XP_002166544.1| PREDICTED: similar to predicted protein [Hydra magnipapillata] Length = 526 Score = 172 bits (436), Expect = 1e-40, Method: Compositional matrix adjust. Identities = 150/512 (29%), Positives = 237/512 (46%), Gaps = 60/512 (11%) Query: 1 MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWR--------QHG 52 M ++ + W+RNDLR+ DN+ L AC + + V+ ++ P+ ++ + G Sbjct: 1 MAGFSSRKTIIYWIRNDLRLHDNECLNFACRDG-SHVLPLYCFDPDHYKLTHHFGFLKTG 59 Query: 53 ISARQSHFIYASLLQVQKSLSQKG--IVFQYHQCSNFDDSIEWLDSYCLQQR-VTKLFYN 109 I ++ I ++ ++ SL +KG +V H+ ++IE L C Q VT + + Sbjct: 60 I--HRAKLILDAVSGLRNSLQKKGSNLVISKHRPK---EAIEKLILECEQTAPVTSIVFQ 114 Query: 110 RQYEINEVRRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHAL-------QMYKVYTPFR 162 ++ E + + K +C S VL GS L H Q+ YT FR Sbjct: 115 KEITKEETDVEASVFK------VCDSKGIKVLSFWGSTLYHIEDIPFQINQIPNTYTLFR 168 Query: 163 KALIQ------NLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQA-IDPMFPI--GEQ 213 K + + N + + SLP G V N F ++ + +FP E Sbjct: 169 KGVEKCPVRKLNPIPDKISSLPNLKNFPLGEVPLLNELGFDKNEYEIDVRSVFPFNGSEV 228 Query: 214 NALHILRKFC--KEKVYYYVEQRD-IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDL 270 +A+ L ++ + Y E R+ + +++ SP+L++G LSPR ++++K+ Sbjct: 229 DAIKRLNEYLWGNNAILTYKETRNGLLGKDYSTKFSPWLALGSLSPRMIYHKIKDFEEQK 288 Query: 271 LIKPKSGAFSWLNELIWREFYR-----HLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQA 325 IK + + ELIWR++++ H + + PWT W +D +L Sbjct: 289 KIKENDSTYWVVFELIWRDYFKFICSKHGNKVFFKGGLKGGKGPWT----WKQDLNLFMK 344 Query: 326 WKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDL 385 W G TG P +DA M++L GWM NR R ASFLVKDL +DWR+G E+F S L+D D+ Sbjct: 345 WANGDTGIPFVDANMKELLATGWMSNRGRQNVASFLVKDLNLDWRMGAEWFESLLIDSDV 404 Query: 386 ASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAP-- 443 SN G W + A GND R FN Q +D +G ++R WLP L + H P Sbjct: 405 CSNYGNWNYIAGIGNDPRSN-RKFNVIKQAADYDEEGDYVRTWLPVLKKLGI--CHTPWR 461 Query: 444 --HSWLDKN--DLSLNYPLPIVDHKKACHHTL 471 S L+ DL NYP PI+ + H L Sbjct: 462 LSASELNAGGVDLGKNYPHPIIVAPEWAKHAL 493 >gi|166366036|ref|YP_001658309.1| deoxyribodipyrimidine photolyase [Microcystis aeruginosa NIES-843] gi|166088409|dbj|BAG03117.1| deoxyribodipyrimidine photolyase [Microcystis aeruginosa NIES-843] Length = 485 Score = 172 bits (436), Expect = 1e-40, Method: Compositional matrix adjust. Identities = 144/496 (29%), Positives = 240/496 (48%), Gaps = 53/496 (10%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISAR--------QSHFIY 62 L+W RNDLR+ D++A+Y A + I F E RQ G ++ ++ F+ Sbjct: 4 LIWYRNDLRVHDHEAIYQAVQ--EQFEIIPFYCFDE--RQFGFTSYGFPKTGKFRAKFLL 59 Query: 63 ASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKL 122 S+ +++SL G + +D I L + ++ K++Y+++ E+ +K Sbjct: 60 ESVADLRQSLESLGGNLIIRRGKP-EDIIPQL---VQELQIAKVYYHQEVTAEELAVEKA 115 Query: 123 LEKRLQHR-VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNL-VQADLRSLPVP 180 + K L V K+F + L P + Q+ +++T FRK + ++ ++A + P P Sbjct: 116 VNKALSGVPVQIKTFWTATLYHPDDLPFTLNQLPELFTNFRKQVERHWQIRA---TYPTP 172 Query: 181 AIRLTGP-VTPSNIPRFFDYPFQA--IDPMFPIGEQNALHILRKFCKEKVY-------YY 230 P + N+P D +D + Q + KE ++ Y Sbjct: 173 KKLTKLPKIELGNLPSLNDLGLTESILDRGGVLSFQGGEMAGKSRVKEYIWDSDSLKTYK 232 Query: 231 VEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREF 290 + ++ +S+ S +LS G LSPR + + +++ +K S + + EL+WR+F Sbjct: 233 ETRNEMLGTNYSSKFSAWLSFGCLSPRYIYEEV-QKYEQTRVKNDS-TYWLIFELLWRDF 290 Query: 291 YRHLM------AFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLN 344 +R + FY S + + ++PW E +W + W +G TG+P++DA MR+L Sbjct: 291 FRFMCRKHGNKIFYKS-GLQELYLPWLE--DWER----FNLWCEGKTGYPLVDANMRELA 343 Query: 345 TIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVP 404 G+M NR R ASFL K+L +DW +G E+F S L+D D+ SN G W + A GND+ Sbjct: 344 ATGFMSNRGRQNVASFLSKNLGIDWCMGAEWFESLLIDYDVCSNWGNWNYTAGVGNDARG 403 Query: 405 YFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND------LSLNYPL 458 FR FN Q K +DP+G ++RHWLPEL + IH P+ + L +NYP Sbjct: 404 -FRYFNIPKQSKDYDPKGDYLRHWLPELALIKGDKIHEPYKLSPEEQKRYGVILGVNYPR 462 Query: 459 PIVDHKKACHHTLNQY 474 PIVD ++ H Y Sbjct: 463 PIVDFFQSIKHNEKIY 478 >gi|172058092|ref|YP_001814552.1| DASH family cryptochrome [Exiguobacterium sibiricum 255-15] gi|171990613|gb|ACB61535.1| cryptochrome, DASH family [Exiguobacterium sibiricum 255-15] Length = 400 Score = 171 bits (434), Expect = 2e-40, Method: Compositional matrix adjust. Identities = 135/430 (31%), Positives = 211/430 (49%), Gaps = 51/430 (11%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 +VW R DLR+ D++AL AC + V AVF+ G +Q F +L + + Sbjct: 4 VVWYRKDLRVDDHEALTRACE-EEKIVRAVFVRQT----ADGRGKQQMTFEEETLQSLNE 58 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130 L Q GI Q +++E L S+ + V ++++R E R+++ ++KR R Sbjct: 59 HLVQLGIELTILQG----ETVEQLTSFIQPEDV--VYFHRMTGEYEARQEQEVQKRFNTR 112 Query: 131 VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTP 190 + ++ L I + L+ +V+T FRK + Q+ A+ P+ A P Sbjct: 113 M----YETQTLHLRDDIGSDELK--RVFTAFRKRVEQDGRFAE----PIEA--------P 154 Query: 191 SNIPRFFDYP--FQAIDP--MFPI--GEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244 NI ++ + P DP FP GE + L + ++ ++ Y E R+ + +S+ Sbjct: 155 GNI-QYIELPQTRGGYDPRTAFPFIGGEAAGRNRLAAYLEQPIFTYKETRNGFNVDDSSK 213 Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFS---WLN-ELIWREFYRHLMAFYPS 300 LS +L+ G LSPR+ L+ + + GA WL EL+WR+F+ HL Sbjct: 214 LSAWLANGSLSPRRVMAELQR------TEQEHGANESTYWLYFELLWRDFF-HLTMRETG 266 Query: 301 VCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASF 360 + + ++ W D + +W G TG P +DA MR++ GWM NR R ITAS+ Sbjct: 267 HRLFRSNGLKDGRLTWKTDQAAIDSWMAGETGEPFVDAFMREIKDTGWMSNRGRQITASY 326 Query: 361 LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDS-VPYFRIFNPTIQGKRFD 419 L+ DL DWRIG YF QL+D D+ASN G W + A GN + P FNP Q +++D Sbjct: 327 LIHDLKQDWRIGARYFEQQLIDYDVASNYGNWAYIAGVGNATRTPR---FNPEFQQQKYD 383 Query: 420 PQGTFIRHWL 429 P FIR W+ Sbjct: 384 PNRAFIRRWM 393 >gi|16330358|ref|NP_441086.1| DNA photolyase [Synechocystis sp. PCC 6803] gi|1652848|dbj|BAA17766.1| DNA photolyase [Synechocystis sp. PCC 6803] Length = 453 Score = 171 bits (434), Expect = 2e-40, Method: Compositional matrix adjust. Identities = 124/391 (31%), Positives = 199/391 (50%), Gaps = 33/391 (8%) Query: 100 QQRVTKLFYNRQYEINEVRRDKLLEKRLQHRVI-CKSFDDSVLLPPGSILNHALQMYKVY 158 Q ++Y+R+ E+ ++ L K+L I K + S L P + + ++ Sbjct: 62 QINAKTIYYHREVTQEELDVERNLVKQLTILGIEAKGYWGSTLCHPEDLPFSIQDLPDLF 121 Query: 159 TPFRKALIQNLVQ------ADLRSLPVPAIRLTGPVTPSNIPRFF---DYPFQAIDPMFP 209 T FRK + + + A + LP P I+L P P FF ++ +++ F Sbjct: 122 TKFRKDIEKKKISIRPCFFAPSQLLPSPNIKLELTAPP---PEFFPQINFDHRSV-LAFQ 177 Query: 210 IGEQNALHILRKFC--KEKVYYYVEQRD-IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEE 266 GE L L+ + +++ Y E R+ + +S+ SP+L++G LSPR + +K Sbjct: 178 GGETAGLARLQDYFWHGDRLKDYKETRNGMVGADYSSKFSPWLALGCLSPRFIYQEVKRY 237 Query: 267 FVDLLIKPKSGAFSWL-NELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQA 325 + + + + WL EL+WR+F+R + Y + + + + W +D + Sbjct: 238 EQE---RVSNDSTHWLIFELLWRDFFRFVAQKYGNKLFNRGGL-LNKNFPWQEDQVRFEL 293 Query: 326 WKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDL 385 W+ G TG+P++DA MR+LN G+M NR R ASFL K+L +DWR G E+F S L+D D+ Sbjct: 294 WRSGQTGYPLVDANMRELNLTGFMSNRGRQNVASFLCKNLGIDWRWGAEWFESCLIDYDV 353 Query: 386 ASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHS 445 SN G W + A GND+ FR FN Q +++DPQGT++RHWLPEL N+P IH P Sbjct: 354 CSNWGNWNYTAGIGNDARD-FRYFNIPKQSQQYDPQGTYLRHWLPELKNLPGDKIHQP-- 410 Query: 446 WLDKN--------DLSLNYPLPIVDHKKACH 468 WL L ++YP P V+ ++ Sbjct: 411 WLLSATEQKQWGVQLGVDYPRPCVNFHQSVE 441 >gi|262041228|ref|ZP_06014439.1| deoxyribodipyrimidine photo-lyase [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|259041344|gb|EEW42404.1| deoxyribodipyrimidine photo-lyase [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] Length = 167 Score = 171 bits (433), Expect = 2e-40, Method: Compositional matrix adjust. Identities = 82/163 (50%), Positives = 113/163 (69%), Gaps = 1/163 (0%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M+ HLVWLR DLRI DN AL AAC + A+V+A++IATP QWR+H ++ RQ+ FI + L Sbjct: 1 MATHLVWLRTDLRIHDNLALAAACRDPQAQVLALYIATPGQWREHHLAPRQAAFIASHLQ 60 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 + +L+++GI + +F S+E L +C Q +V+ LFYN QYE NE +RD +E Sbjct: 61 SLHAALAERGIPLWVEEADDFTASVERLADFCQQHQVSHLFYNYQYEFNERQRDAAVENT 120 Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNL 169 L+ VIC+ FDDSVLLPPGS+L +MYKV+TPF+ A I+ L Sbjct: 121 LRD-VICQGFDDSVLLPPGSVLTGGGEMYKVFTPFKNAFIRRL 162 >gi|97047702|sp|Q4KML2|CRYD_DANRE RecName: Full=Cryptochrome DASH; AltName: Full=Protein CRY-DASH; Short=zCRY-DASH Length = 520 Score = 171 bits (433), Expect = 3e-40, Method: Compositional matrix adjust. Identities = 143/485 (29%), Positives = 226/485 (46%), Gaps = 41/485 (8%) Query: 5 TAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQH------GISARQS 58 +A + LRNDLR+ DN+ + A N++ +I ++ P ++ + Sbjct: 2 SASRTVICLLRNDLRLHDNEVFHWAQRNAE-HIIPLYCFDPRHYQGTYHYNFPKTGPFRL 60 Query: 59 HFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVR 118 F+ S+ ++ L + G Q D E + L T F+ + Sbjct: 61 RFLLDSVKDLRALLKKHGSTLLVRQGKPEDVVCELIKQ--LGSVSTVAFHEEVASEEKSV 118 Query: 119 RDKLLEKRLQHRVICKSFDDSVLLPPGSI-LNHALQMYKVYTPFRKALIQNLVQADLRSL 177 +KL E Q++V ++F S L + +H + VYT FRKA V+A R Sbjct: 119 EEKLKEICCQNKVRVQTFWGSTLYHRDDLPFSHIGGLPDVYTQFRKA-----VEAQGRVR 173 Query: 178 PVPAIRLTGPVTPSN-----IPRFFDY----PFQAIDPMFPI--GEQNALHILRKFC--K 224 PV + PS IP F P FP GE AL L+ + Sbjct: 174 PVLSTPEQVKSPPSGLEEGPIPTFDSLGQTEPLDDCRSAFPCRGGETEALARLKHYFWDT 233 Query: 225 EKVYYYVEQRD-IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSW-L 282 V Y E R+ + + +++ SP+L++G +SPR + ++K+ V+ + + + W + Sbjct: 234 NAVATYKETRNGMIGVDFSTKFSPWLALGCISPRYIYEQIKKYEVE---RTANQSTYWVI 290 Query: 283 NELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQ 342 EL+WR++++ + Y + + + + WN D + AWK+G TG P +DA MR+ Sbjct: 291 FELLWRDYFKFVALKYGNRIFYMNGLQ-DKHVPWNTDMKMFDAWKEGRTGVPFVDANMRE 349 Query: 343 LNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDS 402 L G+M NR R ASFL KDL +DWR+G E+F L+D D+ SN G W ++A GND Sbjct: 350 LALTGFMSNRGRQNVASFLTKDLGLDWRLGAEWFEYLLVDHDVCSNYGNWLYSAGIGNDP 409 Query: 403 VPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAP----HSWLDKNDLSLN--Y 456 R FN QG +D G ++R W+PEL + +H P +S L +SLN Y Sbjct: 410 REN-RKFNMIKQGLDYDNNGDYVRQWVPELRGIKGGDVHTPWTLSNSALSHAQVSLNQTY 468 Query: 457 PLPIV 461 P PI+ Sbjct: 469 PCPII 473 >gi|68534519|gb|AAH98514.1| Cryptochrome DASH [Danio rerio] Length = 520 Score = 171 bits (432), Expect = 4e-40, Method: Compositional matrix adjust. Identities = 143/485 (29%), Positives = 226/485 (46%), Gaps = 41/485 (8%) Query: 5 TAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQH------GISARQS 58 +A + LRNDLR+ DN+ + A N++ +I ++ P ++ + Sbjct: 2 SASRTVICLLRNDLRLHDNEVFHWAQRNAE-HIIPLYSFDPRHYQGTYHYNFPKTGPFRL 60 Query: 59 HFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVR 118 F+ S+ ++ L + G Q D E + L T F+ + Sbjct: 61 RFLLDSVKDLRALLKKHGSTLLVRQGKPEDVVFELIKQ--LGSVSTVAFHEEVASEEKSV 118 Query: 119 RDKLLEKRLQHRVICKSFDDSVLLPPGSI-LNHALQMYKVYTPFRKALIQNLVQADLRSL 177 +KL E Q++V ++F S L + +H + VYT FRKA V+A R Sbjct: 119 EEKLKEICCQNKVRVQTFWGSTLYHRDDLPFSHIGGLPDVYTQFRKA-----VEAQGRVR 173 Query: 178 PVPAIRLTGPVTPSN-----IPRFFDY----PFQAIDPMFPI--GEQNALHILRKFC--K 224 PV + PS IP F P FP GE AL L+ + Sbjct: 174 PVLSTPEQVKSPPSGLEEGPIPTFDSLGQTEPLDDCRSAFPCRGGETEALARLKHYFWDT 233 Query: 225 EKVYYYVEQRD-IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSW-L 282 V Y E R+ + + +++ SP+L++G +SPR + ++K+ V+ + + + W + Sbjct: 234 NAVATYKETRNGMIGVDFSTKFSPWLALGCISPRYIYEQIKKYEVE---RTANQSTYWVI 290 Query: 283 NELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQ 342 EL+WR++++ + Y + + + + WN D + AWK+G TG P +DA MR+ Sbjct: 291 FELLWRDYFKFVALKYGNRIFYMNGLQ-DKHVPWNTDMKMFDAWKEGRTGVPFVDANMRE 349 Query: 343 LNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDS 402 L G+M NR R ASFL KDL +DWR+G E+F L+D D+ SN G W ++A GND Sbjct: 350 LALTGFMSNRGRQNVASFLTKDLGLDWRLGAEWFEYLLVDHDVCSNYGNWLYSAGIGNDP 409 Query: 403 VPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAP----HSWLDKNDLSLN--Y 456 R FN QG +D G ++R W+PEL + +H P +S L +SLN Y Sbjct: 410 REN-RKFNMIKQGLDYDNNGDYVRQWVPELRGIKGGDVHTPWTLSNSALSHAQVSLNQTY 468 Query: 457 PLPIV 461 P PI+ Sbjct: 469 PCPII 473 >gi|327274302|ref|XP_003221917.1| PREDICTED: cryptochrome DASH-like [Anolis carolinensis] Length = 525 Score = 170 bits (431), Expect = 4e-40, Method: Compositional matrix adjust. Identities = 151/505 (29%), Positives = 241/505 (47%), Gaps = 54/505 (10%) Query: 3 ATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQH------GISAR 56 A++ L LRNDLR DN+ L+ A ++D +++ ++ P + Q Sbjct: 2 ASSLPRTALCLLRNDLRCHDNEVLHWAQSHAD-RIVPLYCFDPRHYAQTYHYNFPKTGPF 60 Query: 57 QSHFIYASLLQVQKSLSQKG---IVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYE 113 + F+ S+ ++++L +KG +V + D I L S V + ++ + Sbjct: 61 RLRFLLESVKDLRETLKKKGSNLVVRKGKPEDVVRDLIIQLGS------VASVSFHEEAT 114 Query: 114 INEVRRDK-LLEKRLQHRVICKSFDDSVLLPPGSI-LNHALQMYKVYTPFRKALIQNLVQ 171 E+ +K L+ +H V ++F S L + H Q+ VYT FRKA V+ Sbjct: 115 KEELDVEKALIRVCTEHGVEVQTFWGSTLYHRQDLPFKHISQLPDVYTQFRKA-----VE 169 Query: 172 ADLRSLPVPAIR-----LTGPVTPSNIPRFFDYPFQA--IDP----MFPIGEQNALHILR 220 + R PV + L + NIP D+ DP + GE AL L+ Sbjct: 170 SQARVRPVLKMEGQMKSLPPEIEEGNIPSLEDFGMTEPLRDPRSAFLCSGGETQALMRLQ 229 Query: 221 KFCKEK--VYYYVEQRD-IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSG 277 + E V Y E R+ + + +++ +P+L++G +SPR ++++++ + Sbjct: 230 HYFWETNLVASYKETRNGLIGLDYSTKFAPWLALGCISPRYIYDQIQK--YEKERTANQS 287 Query: 278 AFSWLNELIWREFYRHLMAFYPSVCMGKPFIP---WTEKIEWNKDSHLLQAWKQGYTGFP 334 + L EL WR+++R + Y K F P + I W KD L AWK+G TG P Sbjct: 288 TYWVLFELAWRDYFRFVALKYGR----KIFFPRGLQDKDISWKKDPKLFDAWKEGRTGVP 343 Query: 335 IIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQW 394 +DA MR+L T G+M NR R ASFL KDL +DWR+G E+F S L+D D+ SN G W + Sbjct: 344 FVDANMRELATTGFMSNRGRQNVASFLTKDLGLDWRMGAEWFESLLVDYDVCSNYGNWLY 403 Query: 395 AASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAP----HSWLDKN 450 +A GND R FN Q +D G + R W+PEL + +H P + L + Sbjct: 404 SAGIGNDPREN-RKFNMIKQALDYDGNGDYARLWVPELQCIRGGDVHTPWALSNGALSQA 462 Query: 451 DLSL--NYPLPIVDHKKACHHTLNQ 473 +SL +YP+PI+ + H +NQ Sbjct: 463 GVSLGSSYPVPIIKAPEWGRH-INQ 486 >gi|16444957|dbj|BAB70686.1| cryptochrome 1a [Oryza sativa Japonica Group] Length = 710 Score = 170 bits (431), Expect = 4e-40, Method: Compositional matrix adjust. Identities = 145/476 (30%), Positives = 227/476 (47%), Gaps = 27/476 (5%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 +VW R DLR+ DN AL AA + +V+ V++ PE+ + ++ SL + Sbjct: 21 VVWFRRDLRVEDNPALAAAARAA-GEVVPVYVWAPEEDGPYYPGRVSRWWLSQSLKHLDA 79 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130 SL + G + S D++ L T LF+N Y+ + RD ++ L Sbjct: 80 SLRRLGASRLVTRRSA--DAVVALIELVRSIGATHLFFNHLYDPLSLVRDHRVKALLTAE 137 Query: 131 VIC-KSFDDSVLLPPGSILNHALQMYKVYTPF--RKALIQNLVQADLRSLPVPAIRLTGP 187 I +SF+ +L P +++ + ++ PF R + + L + L Sbjct: 138 GIAVQSFNADLLYEPWEVVDDDGCPFTMFAPFWDRCLCMPDPAAPLLPPKRIAPGELPAR 197 Query: 188 VTPSNIPRFFDYPFQAIDPMFP----IGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS 243 PS+ F D + + + G QNA L F + Y R TS Sbjct: 198 RCPSDELVFEDESERGSNALLARAWSPGWQNADKALAAFLNGPLMDYSVNRKKADSASTS 257 Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFS-------WLNELIWREFYRHLMA 296 LSPYL G LS R+ +++++ + L+ G + +L + RE+ R+L Sbjct: 258 LLSPYLHFGELSVRKVFHQVR---MKQLMWSNEGNHAGDESCVLFLRSIGLREYSRYLTF 314 Query: 297 FYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMI 356 +P + KP + W D + W+QG TG+P++DA MR+L GW+H+R+R++ Sbjct: 315 NHP-CSLEKPLLAHLRFFPWVVDEVYFKVWRQGRTGYPLVDAGMRELWATGWLHDRIRVV 373 Query: 357 TASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGK 416 +SF VK L + WR G +YF LLD DL S+ GWQ+ + + D RI NP ++G Sbjct: 374 VSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGSLPDGRELDRIDNPQLEGY 433 Query: 417 RFDPQGTFIRHWLPELNNVPTQYIH----APHSWLDKNDLSL--NYPLPIVDHKKA 466 +FDP G ++R WLPEL +PT++IH AP S L + L NYPLPIV+ A Sbjct: 434 KFDPHGEYVRRWLPELARLPTEWIHHPWDAPESVLQAAGIELGSNYPLPIVELDAA 489 >gi|115446841|ref|NP_001047200.1| Os02g0573200 [Oryza sativa Japonica Group] gi|46806340|dbj|BAD17529.1| cryptochrome 1a [Oryza sativa Japonica Group] gi|113536731|dbj|BAF09114.1| Os02g0573200 [Oryza sativa Japonica Group] Length = 718 Score = 170 bits (430), Expect = 5e-40, Method: Compositional matrix adjust. Identities = 145/476 (30%), Positives = 227/476 (47%), Gaps = 27/476 (5%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 +VW R DLR+ DN AL AA + +V+ V++ PE+ + ++ SL + Sbjct: 21 VVWFRRDLRVEDNPALAAAARAA-GEVVPVYVWAPEEDGPYYPGRVSRWWLSQSLKHLDA 79 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130 SL + G + S D++ L T LF+N Y+ + RD ++ L Sbjct: 80 SLRRLGASRLVTRRSA--DAVVALIELVRSIGATHLFFNHLYDPLSLVRDHRVKALLTAE 137 Query: 131 VIC-KSFDDSVLLPPGSILNHALQMYKVYTPF--RKALIQNLVQADLRSLPVPAIRLTGP 187 I +SF+ +L P +++ + ++ PF R + + L + L Sbjct: 138 GIAVQSFNADLLYEPWEVVDDDGCPFTMFAPFWDRCLCMPDPAAPLLPPKRIAPGELPAR 197 Query: 188 VTPSNIPRFFDYPFQAIDPMFP----IGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS 243 PS+ F D + + + G QNA L F + Y R TS Sbjct: 198 RCPSDELVFEDESERGSNALLARAWSPGWQNADKALAAFLNGPLMDYSVNRKKADSASTS 257 Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFS-------WLNELIWREFYRHLMA 296 LSPYL G LS R+ +++++ + L+ G + +L + RE+ R+L Sbjct: 258 LLSPYLHFGELSVRKVFHQVR---MKQLMWSNEGNHAGDESCVLFLRSIGLREYSRYLTF 314 Query: 297 FYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMI 356 +P + KP + W D + W+QG TG+P++DA MR+L GW+H+R+R++ Sbjct: 315 NHP-CSLEKPLLAHLRFFPWVVDEVYFKVWRQGRTGYPLVDAGMRELWATGWLHDRIRVV 373 Query: 357 TASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGK 416 +SF VK L + WR G +YF LLD DL S+ GWQ+ + + D RI NP ++G Sbjct: 374 VSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGSLPDGRELDRIDNPQLEGY 433 Query: 417 RFDPQGTFIRHWLPELNNVPTQYIH----APHSWLDKNDLSL--NYPLPIVDHKKA 466 +FDP G ++R WLPEL +PT++IH AP S L + L NYPLPIV+ A Sbjct: 434 KFDPHGEYVRRWLPELARLPTEWIHHPWDAPESVLQAAGIELGSNYPLPIVELDAA 489 >gi|226508658|ref|NP_001146707.1| hypothetical protein LOC100280309 [Zea mays] gi|219888435|gb|ACL54592.1| unknown [Zea mays] Length = 550 Score = 169 bits (429), Expect = 6e-40, Method: Compositional matrix adjust. Identities = 144/486 (29%), Positives = 227/486 (46%), Gaps = 67/486 (13%) Query: 6 AMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHG-------ISARQS 58 + V +VW RNDLR+ DN+AL A S+A V+ V+ P + A ++ Sbjct: 49 GVGVAVVWFRNDLRVIDNEALLRAWAASEA-VLPVYCVDPRVFAGSTHYFGFPKKGALRA 107 Query: 59 HFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVR 118 F+ L +++SL +KG+ E L S ++ +++ E+ Sbjct: 108 QFLIECLGDLKQSLRKKGLDLLVRH----GKPEEILPSIAKAVSAHTIYAHKETCSEELL 163 Query: 119 RDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQ------MY-------------KVYT 159 ++L+ K L+ I + SV P LN LQ MY VYT Sbjct: 164 VERLVSKGLEQVQIAQG-GASV---PKRPLNPRLQLIWGATMYHIDDLPFPVSSLPDVYT 219 Query: 160 PFRKALIQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDY----PFQAIDPM-------- 207 FRKA+ + LP GP S+I + +++ P Sbjct: 220 QFRKAVESKCSVRNCAKLPTS----LGPPPSSSIDEIGGWGTVPTLESLGPSVTKSEKGM 275 Query: 208 -FPIGEQNALHILRKFCKEKVY---YYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRL 263 F GE AL + ++ +K Y V + + +++ SP+L+ G LSPR + Sbjct: 276 HFIGGESAALGRVHEYFWKKDQLKDYKVTRNGMLGPDYSTKFSPWLASGSLSPRYICEEV 335 Query: 264 KEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVC--MGKPFIPWTEKI--EWNKD 319 K + + + L ELIWR+++R L A Y + +G P K+ +W++D Sbjct: 336 KRYEKQRVANDST--YWVLFELIWRDYFRFLSAKYGNAIFHLGGP-----RKVVSKWSQD 388 Query: 320 SHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQ 379 L ++W+ G TG+P+IDA MR+L+ G+M NR R I SFLV+D+ VDWR+G E+F + Sbjct: 389 QALFESWRDGRTGYPLIDANMRELSATGYMSNRGRQIVCSFLVRDMGVDWRMGAEWFETC 448 Query: 380 LLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQY 439 LLD D ASN G W + A GND R F+ Q K +DP+G ++ +WLPEL ++ + Sbjct: 449 LLDYDPASNYGNWTYGAGVGNDPRED-RYFSIPKQAKSYDPEGEYVAYWLPELRSLAKER 507 Query: 440 IHAPHS 445 + P + Sbjct: 508 RNFPGA 513 >gi|161138114|gb|ABX58028.1| cryptochrome 1a [Triticum aestivum] Length = 698 Score = 169 bits (428), Expect = 9e-40, Method: Compositional matrix adjust. Identities = 148/492 (30%), Positives = 236/492 (47%), Gaps = 33/492 (6%) Query: 1 MKATTAMSVH-------LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGI 53 M A+ +MS +VW R DLR+ DN AL AA + +V+ ++ PE+ + Sbjct: 1 MSASPSMSGGAGERTRTVVWFRRDLRVEDNPALAAAARTA-GEVVPAYVWAPEEDGPYYP 59 Query: 54 SARQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYE 113 ++ SL + SL + G + S D++ L T LF+N Y+ Sbjct: 60 GRVSRWWLSQSLKHLDASLRRLGATRLVTRRST--DTVAALLELVRSTGATHLFFNHLYD 117 Query: 114 INEVRRDKLLEKRL-QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQA 172 + RD +++ L + +SF+ +L P +L+ + ++TPF L Sbjct: 118 PLSLVRDHRVKQVLGAEGITVQSFNSDLLYEPWEVLDDHGCPFTMFTPFWNTC---LCMV 174 Query: 173 DLRSLPVPAIRL-TGPVT---PSNIPRFFDYPFQAIDPMFP----IGEQNALHILRKFCK 224 D + +P R+ +G ++ S+ F D + + + G QNA F Sbjct: 175 DPPAPMLPPKRINSGELSRCCSSDDLIFEDESERGSNALLARAWSPGWQNADKAFTAFIN 234 Query: 225 EKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKP----KSGAFS 280 + Y R TS LSPYL G LS R+ +++++ + + + + G Sbjct: 235 GPLIDYSVNRKKADSANTSLLSPYLHFGELSVRKVFHQVRMKQLTWSNESNGDGEEGCSL 294 Query: 281 WLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAM 340 +L + RE+ R+L AF KP + W + + W+QG TG+P++DA M Sbjct: 295 FLRSIGLREYSRYL-AFNHPCSHEKPLLAHLRFFPWVVNEVYFKVWRQGRTGYPLVDAGM 353 Query: 341 RQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGN 400 R+L GW+H+R+R++ +SF VK L + WR G +YF LLD DL S+ GWQ+ + + Sbjct: 354 RELWATGWLHDRIRVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGSLP 413 Query: 401 DSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIH----APHSWLDKNDLSL-- 454 D RI NP +G +FDP G ++R WLPEL +PT++IH AP S L + L Sbjct: 414 DGRELDRIDNPQFEGYKFDPCGEYVRRWLPELARLPTEWIHHPWDAPESVLQAAGIELGS 473 Query: 455 NYPLPIVDHKKA 466 NYPLPIV+ +A Sbjct: 474 NYPLPIVELDEA 485 >gi|300781310|ref|ZP_07091164.1| deoxyribodipyrimidine photolyase [Corynebacterium genitalium ATCC 33030] gi|300533017|gb|EFK54078.1| deoxyribodipyrimidine photolyase [Corynebacterium genitalium ATCC 33030] Length = 286 Score = 169 bits (427), Expect = 1e-39, Method: Compositional matrix adjust. Identities = 107/305 (35%), Positives = 150/305 (49%), Gaps = 50/305 (16%) Query: 191 SNIPRFFDYPFQAIDPMFP---IGEQNALHILRKFCKEKV-YYYVEQRDIPAIQGTSQLS 246 ++ P FD PF A++ + GE A R F + Y + DIP+ TS LS Sbjct: 2 TSAPPTFDEPFWAVETLATHCHPGEMQAQRKFRDFLEGLADTSYKDNNDIPSADATSGLS 61 Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK- 305 +L G +SP Q W F D + A+++L +L+WR+F H + + P++ Sbjct: 62 AHLRFGEISPAQIWAETAA-FADANHTVAADAWAFLRQLLWRDFAWHRLYYIPTLATRNV 120 Query: 306 ----PFIPWT-----------------EKIEWNKDS--HL--LQAWKQGYTGFPIIDAAM 340 PW E + + D HL L W++G TG P++DA M Sbjct: 121 REQFNAFPWAWTDQPTPGSTTRAFAHPEMVPNDPDEAQHLDELALWQKGETGIPMVDAGM 180 Query: 341 RQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGN 400 R+L G MHNR+RM+ S+L K+L + WR GEE+F L+D D ASN WQW A G+ Sbjct: 181 RELWATGTMHNRVRMVVGSWLTKNLGIHWRHGEEWFWDTLVDADYASNPFNWQWVAGCGD 240 Query: 401 DSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPI 460 D+ PYFRIFNP +Q ++FDPQG +I W+PE H P YP P+ Sbjct: 241 DAAPYFRIFNPLLQEEKFDPQGIYINQWVPER--------HTPM-----------YPEPM 281 Query: 461 VDHKK 465 VD K Sbjct: 282 VDVKN 286 >gi|83814331|ref|YP_445305.1| deoxyribodipyrimidine photolyase [Salinibacter ruber DSM 13855] gi|83755725|gb|ABC43838.1| deoxyribodipyrimidine photolyase [Salinibacter ruber DSM 13855] Length = 483 Score = 169 bits (427), Expect = 1e-39, Method: Compositional matrix adjust. Identities = 142/507 (28%), Positives = 222/507 (43%), Gaps = 67/507 (13%) Query: 7 MSVHLVWLRNDLRITDNKAL-YAACHNSDAKVIAVFIATPEQWRQH-----GISARQSHF 60 +S LVW+RNDLR+ D+ L YAA H +VI V+ P + +S+ ++ F Sbjct: 2 LSTALVWIRNDLRVRDHAPLRYAADHYD--QVIPVYCFDPRHFGTTMFDLPKMSSIRARF 59 Query: 61 IYASLLQVQKSLSQKG--IVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVR 118 + S+ ++ S+ G +V + + + L Q ++ ++ E Sbjct: 60 LRESVQDLRDSVQDLGADLVVRGGRPEDI------LPELVRQTGANEVLQFQEIGGEEED 113 Query: 119 RDKLLEKRLQHRVICKSF---------DDSVLLPPGSILNHALQMYKVYTPFRKALIQNL 169 + +E L+ F DD P I KVYT FRKA+ + Sbjct: 114 VETAVEDALRDTGATPGFFWGKTLYHIDDVPFDGPDDIP-------KVYTNFRKAVEKKS 166 Query: 170 VQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQ---AIDPM----FPIGEQNALHILRKF 222 P + L + P +IP + F +D F GE + ++ Sbjct: 167 TVRPTLDAPDSLLPLPEDLNPGSIPTLDELGFDDDGTVDERGVLPFRGGESRGHDRIDEY 226 Query: 223 CKEKVY---YYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAF 279 + Y + + +++ S +L+ G ++PRQ + E + D + KS Sbjct: 227 IWRGDFLKKYKATRNGLLGANYSAKFSAWLAHGCITPRQIHEEV-ERYEDQRVDNKS--T 283 Query: 280 SWLN-ELIWREFYRHLM------AFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTG 332 W+ ELIWR+F+ ++ F P G I+W + W G TG Sbjct: 284 YWMKFELIWRDFFSYVTWKAGERLFRPGGINGN-------DIDWRYYDKSFERWAAGTTG 336 Query: 333 FPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGW 392 P +DA MR+LN G+M NR R AS L + L +DWR+G YF S+L+D D+ASN G W Sbjct: 337 IPFVDANMRELNRTGYMSNRGRQNVASMLSQSLKLDWRMGAAYFESRLVDYDVASNWGNW 396 Query: 393 QWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND- 451 + + GND P R FN Q KR+D G ++R+WLPEL +VP +Y+H P+ + Sbjct: 397 AYNSRVGND--PRARYFNIVKQAKRYDENGEYVRYWLPELADVPDKYVHEPNRMSHEQQK 454 Query: 452 -----LSLNYPLPIVDHKKACHHTLNQ 473 L +YP P+VD K N+ Sbjct: 455 KYGCVLGADYPKPVVDLDKTYQRIRNE 481 >gi|77963974|gb|ABB13328.1| cryptochrome 1a [Hordeum vulgare subsp. vulgare] gi|77963976|gb|ABB13329.1| cryptochrome 1a [Hordeum vulgare subsp. vulgare] gi|77963978|gb|ABB13330.1| cryptochrome 1a [Hordeum vulgare subsp. vulgare] Length = 694 Score = 169 bits (427), Expect = 1e-39, Method: Compositional matrix adjust. Identities = 147/482 (30%), Positives = 233/482 (48%), Gaps = 25/482 (5%) Query: 3 ATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIY 62 A A + +VW R DLR+ DN AL AA + +V+ ++ PE+ + ++ Sbjct: 11 AGEAATRTVVWFRRDLRVEDNPALAAAARTA-GEVVPAYVWAPEEDGPYYPGRVSRWWLS 69 Query: 63 ASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKL 122 SL + SL + G + S D++ L T LF+N Y+ + RD Sbjct: 70 QSLKHLDASLRRLGASRLVTRRST--DTVAALLELVRSTGATHLFFNHLYDPLSLVRDHR 127 Query: 123 LEKRLQHRVIC-KSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPA 181 +++ L I +SF+ +L P +L+ + ++T F + L D + +P Sbjct: 128 VKQVLAAEGISVQSFNSDLLYEPWEVLDDHGSPFTMFTSFWN---KCLCMVDPPAPMLPP 184 Query: 182 IRL-TGPVT--PSNIPRFFDYPFQAIDPMFP----IGEQNALHILRKFCKEKVYYYVEQR 234 R+ +G +T S+ F D + + + G QNA F + Y R Sbjct: 185 KRINSGDLTRCSSDDLIFEDDSERGSNALLARAWSPGWQNADKAFTAFINGPLIDYSVNR 244 Query: 235 DIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKP----KSGAFSWLNELIWREF 290 TS LSPYL G LS R+ +++++ + + + + G +L + RE+ Sbjct: 245 KKADSANTSLLSPYLHFGELSVRKVFHQVRMKQLTWSNESNRDGEEGCSLFLRSIGLREY 304 Query: 291 YRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMH 350 R+L AF KP + W + + W+QG TG+P++DA MR+L GW+H Sbjct: 305 SRYL-AFNHPCSHEKPLLAHLRFFPWVVNEVYFKVWRQGRTGYPLVDAGMRELWATGWLH 363 Query: 351 NRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFN 410 +R+R++ +SF VK L + WR G +YF LLD DL S+ GWQ+ + + D RI N Sbjct: 364 DRIRVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGSLPDGRELDRIDN 423 Query: 411 PTIQGKRFDPQGTFIRHWLPELNNVPTQYIH----APHSWLDKNDLSL--NYPLPIVDHK 464 P +G +FDP G ++R WLPEL +PT++IH AP S L + L NYPLPIV+ Sbjct: 424 PQFEGYKFDPYGEYVRRWLPELARLPTEWIHHPWDAPESVLQAAGIELGSNYPLPIVELD 483 Query: 465 KA 466 +A Sbjct: 484 EA 485 >gi|290975950|ref|XP_002670704.1| predicted protein [Naegleria gruberi] gi|284084266|gb|EFC37960.1| predicted protein [Naegleria gruberi] Length = 553 Score = 169 bits (427), Expect = 1e-39, Method: Compositional matrix adjust. Identities = 155/539 (28%), Positives = 248/539 (46%), Gaps = 95/539 (17%) Query: 11 LVWLRNDLRITDNKAL-----YAACHNSDAKVIAVFIATPEQWRQHGIS---------AR 56 L+W RNDLR+ DN++L A N++ + V R G S A Sbjct: 12 LLWFRNDLRLHDNESLIKTLRLANSSNNNTSKVGVLPLYCFDPRHFGFSRIGKFRKANAN 71 Query: 57 QSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINE 116 ++ F+ S+ ++K+L + + Q + ++ I L C Q + ++F +++ E Sbjct: 72 RTRFLTESVDNLRKNLMNEWGLKLMIQIGHPEEIIPHL---CSQYEIEQVFADKEVTSEE 128 Query: 117 VRRDKLLEKRLQHRVICKSFDDSVL-----------LP------------PGSILNHALQ 153 +++LEK++ + S+ S++ LP P I+ LQ Sbjct: 129 TSIEQVLEKQIN---VNYSYGFSMVHVEDLPFKIENLPHVFTDFRRKVENPKLIVRPLLQ 185 Query: 154 MYKVYTPFRKALIQ----NLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPM-- 207 + +P K LI NL+Q + P +++ G T I + DP Sbjct: 186 L----SPNEKKLISSRVVNLIQDENALGKTPDLKVLG-YTDEEISEMME---NLKDPRSV 237 Query: 208 --FPIGEQNALHILRKF--CKEKVYYYVEQRDIPAIQG-TSQLSPYLSIGVLSPRQCWNR 262 F GE AL L + ++++ Y E R+ + +S+LSP+LS+G +SPR+ ++ Sbjct: 238 LHFKGGEDEALARLNDYLWTQDRLKTYKETRNGLVGEAYSSKLSPWLSLGCISPRKIYHE 297 Query: 263 LKEEFVDLLIKPKSGAFSWL-NELIWREFYRHLMA-FYPSVCMGKPFIPWTEK------- 313 +K + + ++ + WL EL+WR+++R F + M K + K Sbjct: 298 VKRYEKE---RVENDSTYWLIFELLWRDYFRFFAEKFGNHIFMLKGVTRASSKRKGLIGD 354 Query: 314 ------------IEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFL 361 W +D L + W G TG P +DA MR+L GWM NR R ASFL Sbjct: 355 SSSNKVESKYDETRWKQDLKLFKLWADGKTGLPFVDANMRELKISGWMSNRGRQNVASFL 414 Query: 362 VKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGN-DSVPYFRIFNPTIQGKRFDP 420 KDL +DWR+G EYF S LLD + SN G W +AA G+ D R FN QG +D Sbjct: 415 SKDLNLDWRLGAEYFESLLLDHSVTSNWGNWLYAAGVGDVDPRGEARYFNVVKQGFDYDF 474 Query: 421 QGTFIRHWLPELNNVPTQYIHAPHSWLD------KNDLSLNYPLPIVDHKKACHHTLNQ 473 G F++ W+PEL+ VP + IHAP+ + K + ++YP +V+ K HH LN+ Sbjct: 475 NGEFVKLWIPELDQVPQRCIHAPYLMSESEQTNAKCTIGVDYPKSLVNVK--AHHHLNE 531 >gi|290510439|ref|ZP_06549809.1| deoxyribodipyrimidine photo-lyase [Klebsiella sp. 1_1_55] gi|289777155|gb|EFD85153.1| deoxyribodipyrimidine photo-lyase [Klebsiella sp. 1_1_55] Length = 160 Score = 169 bits (427), Expect = 1e-39, Method: Compositional matrix adjust. Identities = 80/161 (49%), Positives = 113/161 (70%), Gaps = 1/161 (0%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M+ HLVWLR DLRI DN AL AAC + A+V+A++IATP QWR+H ++ RQ+ FI + L Sbjct: 1 MATHLVWLRTDLRIHDNLALAAACRDPQAQVLALYIATPGQWREHHLAPRQAAFIVSHLH 60 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 + +L+++GI + +F S+E L +C Q +V+ LFYN QYE NE +RD +E Sbjct: 61 SLHTALAERGIPLWVEEADDFTASVERLAHFCQQHQVSHLFYNYQYEFNERQRDAAVENT 120 Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQ 167 L+ VIC+ FDDSVLLPPGS++ + +MYKV+TPF+ A I+ Sbjct: 121 LR-DVICQGFDDSVLLPPGSVMTGSGEMYKVFTPFKNAFIR 160 >gi|32477278|ref|NP_870272.1| DNA photolyase [Rhodopirellula baltica SH 1] gi|32447829|emb|CAD77347.1| DNA photolyase [Rhodopirellula baltica SH 1] Length = 526 Score = 169 bits (427), Expect = 1e-39, Method: Compositional matrix adjust. Identities = 136/503 (27%), Positives = 231/503 (45%), Gaps = 44/503 (8%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQS-----HFI 61 M+ LVW RNDLR D++ A ++ + AV P Q+ + +++ F+ Sbjct: 39 MANALVWFRNDLRTIDHEPFLRA--STADRCFAVHCIDPRQFETTELGFQRTGPFRARFL 96 Query: 62 YASLLQVQKSLSQKG--IVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRR 119 +L ++ L G ++ + + L + + ++ + E Sbjct: 97 IENLTDLRSRLRSLGGELIVRVGRPETV------LQHLLPSLAIDAVHFHHEPRTEEADT 150 Query: 120 DKLLEKRL-QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLP 178 + +++ QH + L+ P + +++T FRK + + Q + RS Sbjct: 151 AESVQQLCDQHGIATHVAYGDTLIHPDELPFEIADTPELFTDFRKEIEK---QCEARSPL 207 Query: 179 VPAIRLTG----PVTPSNIPRFFDYPFQAIDPM-------FPIGEQNALHILRKFC--KE 225 IR+ G V +IP + P+ F G+ A + ++ ++ Sbjct: 208 EEPIRIHGTLPEEVNAGDIPTLESLGL-STPPLDDRCLNQFTGGQNAAQQRMEEYIWNED 266 Query: 226 KVYYYVEQRD-IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNE 284 ++ Y E R+ + +S+ SP+L+ G LSPR + ++ + + +K KS + + E Sbjct: 267 RLRVYKETRNGMLHPNDSSKFSPWLAQGCLSPRMIADHVRR-YEEERVKNKS-TYWMIFE 324 Query: 285 LIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLN 344 L+WR+++R + + + + ++W D L + W+ G TG+P++DA MR+L Sbjct: 325 LLWRDYFRWISRKHGATLFRAGGLRGV-NVDWKSDRELFRRWQDGTTGYPLVDANMRELR 383 Query: 345 TIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVP 404 T G+M NR R ASFL K+L +DWR G +F SQL+D D+ASN G W +AA GND+ Sbjct: 384 TTGYMSNRGRQNVASFLTKNLGIDWRWGARWFESQLVDYDVASNYGNWNYAAGVGNDARG 443 Query: 405 YFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND------LSLNYPL 458 FR FN T Q + +D QG + +HWLPEL ++ IH P + L YP Sbjct: 444 -FRFFNITKQSRDYDSQGEYAKHWLPELRDLDVTEIHEPWKMSPERQQEVGATLGKEYPH 502 Query: 459 PIVDHKKACHHTLNQYYAAKKQS 481 PIVD + Y AK S Sbjct: 503 PIVDLFDSAKENETIYMRAKAAS 525 >gi|61816948|gb|AAX56342.1| 6-4 photolyase [Dunaliella salina] Length = 600 Score = 168 bits (426), Expect = 1e-39, Method: Compositional matrix adjust. Identities = 149/509 (29%), Positives = 228/509 (44%), Gaps = 61/509 (11%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPE--QWRQHGISARQSHFIYASLLQV 68 ++W R LR+ DN AL AC S A V +FI P Q + + + F+ SL + Sbjct: 52 ILWFRKGLRLHDNPALRDACTGS-AAVFPIFIIDPYFLQKSNNKVGVNRYQFLLESLSDL 110 Query: 69 QKSLSQKG---IVFQYHQCSNFDDSI-EW-LDSYCLQQRVTKLFYNRQYEINEVRRDKLL 123 SL+ G +V + + +W + C + R ++++ R+ + Sbjct: 111 NSSLTSLGSQLLVLRGTPEEVIPRVLRDWSIKKLCYEIDTEPYAKARDARVDDMAREAGV 170 Query: 124 E--KRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQA---DLRSLP 178 E K H + +D +L+ + K P + LV L +LP Sbjct: 171 EVKKHWSHTL----YDTDMLV----------RENKGKAPLTMQAFEKLVDRVGHPLTALP 216 Query: 179 VPAIRLTGPVTPS---------NIPRFFDYPF-QAIDPMFPIGEQNALHILRKFCKEKVY 228 P RL PV S +P + + F +A +F GE AL L + K+ + Sbjct: 217 APTARLP-PVDVSLPGIKDAEVGVPTWQEMGFKEAPTAIFKGGETEALKRLEHYMKDTKW 275 Query: 229 YYVEQR---DIPAIQ--GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLN 283 ++ D A T+ LSPYL G LS R RL + + L K S Sbjct: 276 XASFEKPSTDPSAFTEPSTTALSPYLKFGCLSARFFHQRLLDVY-RLHPKHSQPPMSLRG 334 Query: 284 ELIWREFYRHLMAFYPSV--CMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMR 341 +L+WREF+ L + P+ G P +I W+ + LL+AW+ G TG+P IDAAM Sbjct: 335 QLLWREFFYTLGSHTPNFDRIAGNPIC---RQITWDTNPALLKAWRDGATGYPWIDAAMT 391 Query: 342 QLNTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGN 400 QL GWMH+ R A FL + DL + W G+E F LLD D N W W +++ Sbjct: 392 QLREWGWMHHLARHSVACFLTRGDLYLSWESGKEVFEELLLDADYFINAANWMWLSASAF 451 Query: 401 DSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND--------L 452 YFR+++P + GK++D +G +IR +LP L ++P +YI+ P W + + Sbjct: 452 -FAQYFRVYSPVVFGKKYDKEGAYIRKFLPVLKDMPAKYIYEP--WTAPKEVQQRANCII 508 Query: 453 SLNYPLPIVDHKKACHHTLNQYYAAKKQS 481 +YP PIVDH A + + AA K + Sbjct: 509 GRDYPAPIVDHAVASKECIARMGAAYKAT 537 >gi|308803621|ref|XP_003079123.1| cryptochrome-like protein 1 (ISS) [Ostreococcus tauri] gi|116057578|emb|CAL53781.1| cryptochrome-like protein 1 (ISS) [Ostreococcus tauri] Length = 1646 Score = 168 bits (426), Expect = 1e-39, Method: Composition-based stats. Identities = 93/263 (35%), Positives = 134/263 (50%), Gaps = 32/263 (12%) Query: 239 IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFY 298 I T+ LSPY+ G +SPR ++ L + +L K S + +L+WREFY + A Sbjct: 1384 IPSTTALSPYMKFGCVSPRVFYHELTAVYKELEGKHSKPPTSLMGQLMWREFYYLVAAGT 1443 Query: 299 P--------SVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMH 350 ++C +I W KD L AW+ TGFP IDAAM QL GW+H Sbjct: 1444 KNFDKMEGNAIC---------RQIPWKKDRELFAAWENAQTGFPWIDAAMTQLRREGWLH 1494 Query: 351 NRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIF 409 + R A FL + DL + W G + F L+D D A NNG W W + + YFR++ Sbjct: 1495 HLARHAVACFLTRGDLFIHWEWGRDAFDRDLVDADWALNNGNWMWLSCSAF-FYQYFRVY 1553 Query: 410 NPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLS--------LNYPLPIV 461 +P K++D G ++RH+LP L N+P++Y++ P WL D+ ++YP PIV Sbjct: 1554 SPIAFAKKYDKDGQYVRHYLPVLKNMPSKYVYEP--WLAPLDVQKKAGCVVGVDYPAPIV 1611 Query: 462 DHKKA---CHHTLNQYYAAKKQS 481 DH A C + YAA K + Sbjct: 1612 DHSAASKRCVDDIATAYAAHKDA 1634 >gi|97047983|sp|Q7UJB1|CRYD_RHOBA RecName: Full=Cryptochrome DASH Length = 488 Score = 168 bits (426), Expect = 1e-39, Method: Compositional matrix adjust. Identities = 136/503 (27%), Positives = 231/503 (45%), Gaps = 44/503 (8%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQS-----HFI 61 M+ LVW RNDLR D++ A ++ + AV P Q+ + +++ F+ Sbjct: 1 MANALVWFRNDLRTIDHEPFLRA--STADRCFAVHCIDPRQFETTELGFQRTGPFRARFL 58 Query: 62 YASLLQVQKSLSQKG--IVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRR 119 +L ++ L G ++ + + L + + ++ + E Sbjct: 59 IENLTDLRSRLRSLGGELIVRVGRPETV------LQHLLPSLAIDAVHFHHEPRTEEADT 112 Query: 120 DKLLEKRL-QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLP 178 + +++ QH + L+ P + +++T FRK + + Q + RS Sbjct: 113 AESVQQLCDQHGIATHVAYGDTLIHPDELPFEIADTPELFTDFRKEIEK---QCEARSPL 169 Query: 179 VPAIRLTG----PVTPSNIPRFFDYPFQAIDPM-------FPIGEQNALHILRKFC--KE 225 IR+ G V +IP + P+ F G+ A + ++ ++ Sbjct: 170 EEPIRIHGTLPEEVNAGDIPTLESLGL-STPPLDDRCLNQFTGGQNAAQQRMEEYIWNED 228 Query: 226 KVYYYVEQRD-IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNE 284 ++ Y E R+ + +S+ SP+L+ G LSPR + ++ + + +K KS + + E Sbjct: 229 RLRVYKETRNGMLHPNDSSKFSPWLAQGCLSPRMIADHVRR-YEEERVKNKS-TYWMIFE 286 Query: 285 LIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLN 344 L+WR+++R + + + + ++W D L + W+ G TG+P++DA MR+L Sbjct: 287 LLWRDYFRWISRKHGATLFRAGGLRGV-NVDWKSDRELFRRWQDGTTGYPLVDANMRELR 345 Query: 345 TIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVP 404 T G+M NR R ASFL K+L +DWR G +F SQL+D D+ASN G W +AA GND+ Sbjct: 346 TTGYMSNRGRQNVASFLTKNLGIDWRWGARWFESQLVDYDVASNYGNWNYAAGVGNDARG 405 Query: 405 YFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND------LSLNYPL 458 FR FN T Q + +D QG + +HWLPEL ++ IH P + L YP Sbjct: 406 -FRFFNITKQSRDYDSQGEYAKHWLPELRDLDVTEIHEPWKMSPERQQEVGATLGKEYPH 464 Query: 459 PIVDHKKACHHTLNQYYAAKKQS 481 PIVD + Y AK S Sbjct: 465 PIVDLFDSAKENETIYMRAKAAS 487 >gi|302797733|ref|XP_002980627.1| hypothetical protein SELMODRAFT_268379 [Selaginella moellendorffii] gi|300151633|gb|EFJ18278.1| hypothetical protein SELMODRAFT_268379 [Selaginella moellendorffii] Length = 499 Score = 168 bits (426), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 141/497 (28%), Positives = 232/497 (46%), Gaps = 59/497 (11%) Query: 8 SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQH------GISARQSHFI 61 V ++W RNDLRI DN+AL+ A +S + V+ V+ P + ++ F+ Sbjct: 23 GVSIMWFRNDLRIVDNEALFKAWASSSS-VLPVYCVDPRHFGTTHYFKFPKTGELRAQFL 81 Query: 62 YASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDK 121 SL+ ++K+L ++G+ + + L V + + Y E ++ Sbjct: 82 LESLVDLKKNLKKRGLDLVIRSGN---------PEFILPSLVEAVGADTIYAQEETCSEE 132 Query: 122 L-LEKRLQHRVICKSFDDSVLLPPGSILNH-------ALQMYKVYTPFRKALIQNLVQAD 173 L +EK ++ + K+ + L G+ + H ++ VYT FRKA V++ Sbjct: 133 LQVEKAVKKSIGTKA---KLELVWGTTMYHLNDLPFTTARLPDVYTQFRKA-----VESS 184 Query: 174 LRSLPVPAIRLT-GPVTPS------NIPRFFDYPFQAIDP---------MFPIGEQNALH 217 R P + T GP+ S ++ + + + P F GE A+ Sbjct: 185 SRVRPCLKLPQTLGPLPDSLGEKVGDLDKVPNLSHLGLRPREQSSLAAMQFAGGETAAIQ 244 Query: 218 ILRKF--CKEKVYYYVEQRD-IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKP 274 L ++ K + Y E R+ + +++ SP+L+ G +SPR + EE K Sbjct: 245 RLCEYFWTKNCLRNYKETRNGMLGADYSTKFSPWLASGSISPR----FIHEEASIKYEKE 300 Query: 275 KSGAFS--W-LNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYT 331 ++ S W L ELIWR+++R L Y + W++D L +AW+ G T Sbjct: 301 RTANNSTYWVLFELIWRDYFRFLSMKYGNSIFHLEGPRKVRTKSWSQDKTLFEAWRTGTT 360 Query: 332 GFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGG 391 G+P+IDA M++L G+M NR R I SFLV+D+ +DWR+G E+F S LLD D SN G Sbjct: 361 GYPLIDANMKELYATGFMSNRGRQIVCSFLVRDMGIDWRMGAEWFESCLLDYDPCSNYGN 420 Query: 392 WQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND 451 W + A GND R F+ Q + +DP G+++ HW+P+L +PT H P K Sbjct: 421 WTYGAGVGNDPRED-RYFSIPKQAQTYDPDGSYVSHWIPQLQELPTDARHFPKVGYLKKI 479 Query: 452 LSLNYPLPIVDHKKACH 468 + L + P K + + Sbjct: 480 VPLRFSNPGRTSKTSAN 496 >gi|209524800|ref|ZP_03273346.1| cryptochrome, DASH family [Arthrospira maxima CS-328] gi|209494679|gb|EDZ94988.1| cryptochrome, DASH family [Arthrospira maxima CS-328] Length = 486 Score = 168 bits (426), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 141/500 (28%), Positives = 242/500 (48%), Gaps = 73/500 (14%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHG-----ISARQSHFIYASL 65 ++W R+DLR+ D++ L A ++ A++I ++ P Q+ + + + F+ S+ Sbjct: 9 ILWYRHDLRLHDHEPLDLAT-STQAQIIPLYCFDPRQFAKTSFGFPKMGGFRGKFLLESV 67 Query: 66 LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCL----QQRVTKLFYNRQYEINEVRRDK 121 ++ +L + G SN I ++ Q + ++Y+++ E+ ++ Sbjct: 68 ADLRHNLQKIG--------SNLLVRIGEPETVIFDLVKQLNIDAVYYHKEVTTEELAVER 119 Query: 122 LLEKRLQH-RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVP 180 LEK L V KSF + L P + ++ +++T FRK Q + +S+ P Sbjct: 120 ALEKALTPLGVEVKSFWGATLYHPKELPFPIEKLPELFTNFRK-------QVEKKSIIYP 172 Query: 181 AIRLTGP--------VTPSNIPRFFDY-----PFQAIDPM-FPIGEQNALHILRKFC--K 224 T P + P IP + PF + + F GE L L + + Sbjct: 173 P--YTPPKQLPTFPDIEPGEIPTLAELGITKLPFDSRAVLDFVGGETAGLTRLNDYFWQR 230 Query: 225 EKVYYYVEQRD-IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLN 283 + + Y + R+ + +S+ SP+L+ G LSPR + ++ + + K+ + WL Sbjct: 231 DCLKNYKQTRNGMLGSDYSSKFSPWLANGCLSPRWIYQQVCDYEQQ---RVKNDSTYWLV 287 Query: 284 -ELIWREFYRHLM------AFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPII 336 EL+WR+++R + FY S G KI W ++ Q+W G TGFP++ Sbjct: 288 FELLWRDYFRFICLKHGRKVFYKSGLQGV-------KIPWGENWQQFQSWCDGLTGFPLV 340 Query: 337 DAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAA 396 DA MR+L G+M NR R ASFL K+L ++W++G E+F S L+D D+ SN G W + A Sbjct: 341 DANMRELAATGFMSNRGRQNVASFLTKNLGINWQMGAEWFESLLIDYDVCSNWGNWNYTA 400 Query: 397 STGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND----- 451 GND FR FN Q + +DP G +++HWLPEL ++P +H+P W N Sbjct: 401 GVGNDGRG-FRYFNIAKQSQDYDPMGDYVKHWLPELASIPHGKVHSP--WRLSNQEQIRF 457 Query: 452 ---LSLNYPLPIVDHKKACH 468 L ++YP P+VD +++ Sbjct: 458 GMRLGVDYPYPMVDLQRSVE 477 >gi|45387783|ref|NP_991249.1| cryptochrome DASH [Danio rerio] gi|41688004|dbj|BAD08600.1| cryptochrome dash [Danio rerio] Length = 520 Score = 168 bits (426), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 142/485 (29%), Positives = 225/485 (46%), Gaps = 41/485 (8%) Query: 5 TAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQH------GISARQS 58 +A + LRNDLR+ DN+ + A N++ +I ++ P ++ + Sbjct: 2 SASRTVICLLRNDLRLHDNEVFHWAQRNAE-HIIPLYCFDPRHYQGTYHYNFPKTGPFRL 60 Query: 59 HFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVR 118 F+ S+ ++ L + G Q D E + L T F+ + Sbjct: 61 RFLLDSVKDLRALLKKHGSTLLVRQGKPEDVVCELIKQ--LGSVSTVAFHEEVASEEKSV 118 Query: 119 RDKLLEKRLQHRVICKSFDDSVLLPPGSI-LNHALQMYKVYTPFRKALIQNLVQADLRSL 177 +KL E Q++V ++F S L + +H + VYT FRKA V+A R Sbjct: 119 EEKLKEICCQNKVRVQTFWGSTLYHRDDLPFSHIGGLPDVYTQFRKA-----VEAQGRVR 173 Query: 178 PVPAIRLTGPVTPSN-----IPRFFDY----PFQAIDPMFPI--GEQNALHILRKFC--K 224 PV + PS IP F P FP GE AL L+ + Sbjct: 174 PVLSTPEQVKSPPSGLEEGPIPTFDSLGQTEPLDDCRSAFPCRGGETEALARLKHYFWDT 233 Query: 225 EKVYYYVEQRD-IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSW-L 282 V Y E R+ + + +++ SP+L++G +SPR + ++K+ V+ + + + W + Sbjct: 234 NAVATYKETRNGMIGVDFSTKFSPWLALGCISPRYIYEQIKKYEVE---RTANQSTYWVI 290 Query: 283 NELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQ 342 EL+WR++++ + Y + + + + W D + AWK+G TG P +DA MR+ Sbjct: 291 FELLWRDYFKFVALKYGNRIFYMNGLQ-DKHVPWKTDMKMFDAWKEGRTGVPFVDANMRE 349 Query: 343 LNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDS 402 L G+M NR R ASFL KDL +DWR+G E+F L+D D+ SN G W ++A GND Sbjct: 350 LALTGFMSNRGRQNVASFLTKDLGLDWRLGAEWFEYLLVDHDVCSNYGNWLYSAGIGNDP 409 Query: 403 VPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAP----HSWLDKNDLSLN--Y 456 R FN QG +D G ++R W+PEL + +H P +S L +SLN Y Sbjct: 410 REN-RKFNMIKQGLDYDNNGDYVRQWVPELRGIKGGDVHTPWTLSNSALSHAQVSLNQTY 468 Query: 457 PLPIV 461 P PI+ Sbjct: 469 PCPII 473 >gi|125590574|gb|EAZ30924.1| hypothetical protein OsJ_15004 [Oryza sativa Japonica Group] Length = 697 Score = 168 bits (426), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 145/472 (30%), Positives = 221/472 (46%), Gaps = 42/472 (8%) Query: 17 DLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQKSLSQKG 76 DLR+ DN AL AA +V+ ++ PE+ + ++ SL + SL + G Sbjct: 24 DLRVEDNPALAAAARAG-GEVVPAYVWAPEEDGPYYPGRVSRWWLSQSLKHLDASLRRLG 82 Query: 77 IVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYE-INEVRRDKLLEKRLQHRVICKS 135 + S D++ L T+LF+N Y+ I+ VR +L E +I +S Sbjct: 83 AGKLVTRRSA--DAVVALLQLVRDTGATRLFFNHLYDPISLVRDHRLKEMMAAEGIIVQS 140 Query: 136 FDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT--PSNI 193 F+ +L P +++ Q + ++ PF + LP I +G ++ PS+ Sbjct: 141 FNADLLYEPWEVVDDEGQSFTMFAPFWNRCLSMPYDPAAPLLPPKRIN-SGDLSMCPSDD 199 Query: 194 PRFFDYPFQAIDPMFP----IGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYL 249 F D + + + G QNA L F + +Y R TS LSPYL Sbjct: 200 LIFEDDSERGSNALLARAWSPGWQNADKALTAFLNGPLIHYSVNRKKADSASTSLLSPYL 259 Query: 250 SIGVLSPRQCW--------------NRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLM 295 G LS R+ + NR EE L ++ + RE+ R+L Sbjct: 260 HFGELSVRKVFHLVRMKQLVWSNEGNRAAEESCTLFLR----------SIGLREYSRYLS 309 Query: 296 AFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRM 355 +P KP + W + + W+QG TG+P++DA MR+L GW+H+R+R+ Sbjct: 310 FNHP-CSHEKPLLAHLRFFPWVINECYFKIWRQGRTGYPLVDAGMRELWATGWLHDRIRV 368 Query: 356 ITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQG 415 + +SF VK L + WR G +YF LLD DL S+ GWQ+ + + D RI NP ++G Sbjct: 369 VVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGSLPDGRELDRIDNPQLEG 428 Query: 416 KRFDPQGTFIRHWLPELNNVPTQYIH----APHSWLDKNDLSL--NYPLPIV 461 +FDP G ++R WLPEL +PT++IH AP S L + L NYPLPIV Sbjct: 429 YKFDPHGEYVRRWLPELARLPTEWIHHPWDAPASVLQAAGVELGSNYPLPIV 480 >gi|288575582|ref|ZP_05977252.2| deoxyribodipyrimidine photolyase [Neisseria mucosa ATCC 25996] gi|288567636|gb|EFC89196.1| deoxyribodipyrimidine photolyase [Neisseria mucosa ATCC 25996] Length = 481 Score = 167 bits (423), Expect = 3e-39, Method: Compositional matrix adjust. Identities = 137/466 (29%), Positives = 210/466 (45%), Gaps = 50/466 (10%) Query: 6 AMSVH-LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYAS 64 AM H LVW R +LRI DN AL AA V V++A ++ RQ F Y + Sbjct: 54 AMQAHTLVWFRRNLRIRDNAALSAAVKRG-LPVAGVWVAKGSSEIRN---PRQDWFHYQA 109 Query: 65 LLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLE 124 + SL+ +G+ + +E L ++ + V + + Y +E+ +D + Sbjct: 110 AAALHGSLAARGVALYAV------NRVEELPAFAARLNVQTVIADEAYTSSEIGQDNRIW 163 Query: 125 KRLQHRVIC-KSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQ------ADLRSL 177 + L + + + +D + I+ Y + +++A + Q AD R Sbjct: 164 RILDEKGVAFERVNDRAVFAKADIMGSHGAPYTDFPHYKEAWLALFRQRFGGQDADCRQT 223 Query: 178 PVPAIRLTGPVTPSNIPRFFDYPFQA-IDPMFPIGEQNALHILRKFCKEKVYYYVEQRDI 236 + T + +P F + Q I GE A R+F +E + +Y +D Sbjct: 224 EI------FQTTSAEMPPFPAWNGQQNIVSAQRGGEDEADKQWRQF-EENIGFYPIMKDF 276 Query: 237 PAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMA 296 PA +GTS+LS YLS G +SPR V + GA +WL+ LI R+FY+ L Sbjct: 277 PARKGTSRLSAYLSAGCISPR----------VLAVEAAGQGADAWLDNLIRRDFYQQLAY 326 Query: 297 FYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMI 356 + P T+ + L + W+QG TGFP+IDAAMR L + GW+H LR + Sbjct: 327 HRARIE------PETDALSTTFSDDLTERWRQGETGFPLIDAAMRSLKSSGWLHPALRSL 380 Query: 357 TASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGK 416 TA FL L G +F +Q D D A N G WQ AA R + + Sbjct: 381 TAEFLCGILHQPSEPGIAWFAAQQTDFDPALNEGNWQTAARNARR-----RSIDIIQTAR 435 Query: 417 RFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSL-NYPLPIV 461 R DP GTF+R +PEL ++P +H P WL +++ YP P++ Sbjct: 436 RLDPDGTFVRRHIPELAHLPANLVHTP--WLASSEIDAHGYPSPVI 479 >gi|168067358|ref|XP_001785586.1| photolyase-like protein [Physcomitrella patens subsp. patens] gi|162662787|gb|EDQ49598.1| photolyase-like protein [Physcomitrella patens subsp. patens] Length = 557 Score = 167 bits (423), Expect = 4e-39, Method: Compositional matrix adjust. Identities = 140/486 (28%), Positives = 222/486 (45%), Gaps = 67/486 (13%) Query: 1 MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQH------GIS 54 M + + +VW RNDLRI+DN+AL A +S A V+ +++ P + Q Sbjct: 57 MTSRKGTGIAIVWFRNDLRISDNEALLKAWQSSQA-VVPLYVVDPRLYGQTYHFGFPKTG 115 Query: 55 ARQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFD------DSIEWLDSY-----CLQQRV 103 ++ FI S+ ++ +L Q+G+ Q D SI Y C ++ Sbjct: 116 ELRAQFIMESVANLRDNLRQRGLDLIVRQGKPEDVVPSIAKSIGAHTVYAHKETCSEETT 175 Query: 104 TKLFYNRQYEINE------VRRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKV 157 + R E +R D + L H DD P ++ V Sbjct: 176 VETGVKRGLANLEGGPKMQIRLDFVWGGTLYH------LDDLPFSPS--------ELPDV 221 Query: 158 YTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPS---NIPRFFDYP--------FQAIDP 206 YT FRK + N +P GP+ S I D P ++ P Sbjct: 222 YTQFRKGVEYNCKVRPALKMPTQ----MGPLPESLSEKIGELGDIPTMAELGLKYREQSP 277 Query: 207 M----FPIGEQNALHILRKFC--KEKVYYYVEQRD-IPAIQGTSQLSPYLSIGVLSPRQC 259 + F GE AL L+ + K+++ Y E R+ + +++ SP+L+ G LSPR Sbjct: 278 LGVMHFEGGETAALARLQDYFWNKDQLKIYKETRNGMLGANYSTKFSPWLAHGCLSPRTI 337 Query: 260 WNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVC--MGKPFIPWTEKIEWN 317 + +K + + + + L ELIWR+++R + Y + +G P ++ W+ Sbjct: 338 HDEVKRYETERVANDST--YWVLFELIWRDYFRFVSIKYGNAIFHLGGPRKVVGKR--WS 393 Query: 318 KDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFM 377 ++ L +AW++G TG+P+IDA M++L G+M NR R I SFLV+DL +DWR+G E+F Sbjct: 394 QNRELFEAWREGRTGYPLIDANMKELAATGFMSNRGRQIVCSFLVRDLGLDWRMGGEWFE 453 Query: 378 SQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPT 437 + LLD D SN G W + A GND R F+ Q +DP+G ++ HWLP L P Sbjct: 454 TCLLDYDPCSNYGNWTYGAGVGNDPRED-RYFSIPKQSATYDPEGEYVAHWLPSLKQSPP 512 Query: 438 QYIHAP 443 + + P Sbjct: 513 KQRNFP 518 >gi|255574119|ref|XP_002527975.1| DNA photolyase, putative [Ricinus communis] gi|223532601|gb|EEF34387.1| DNA photolyase, putative [Ricinus communis] Length = 576 Score = 167 bits (422), Expect = 5e-39, Method: Compositional matrix adjust. Identities = 137/477 (28%), Positives = 227/477 (47%), Gaps = 33/477 (6%) Query: 6 AMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQH------GISARQSH 59 + +VW RNDLRI DN++L A +SD+ ++ V+ P + A ++ Sbjct: 81 GKGICIVWFRNDLRILDNESLLQAWLSSDS-LLPVYCVDPRLFHTTHHFAFPKTGALRAQ 139 Query: 60 FIYASLLQVQKSLSQKGI-VFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVR 118 F+ L ++ +L ++G+ +F H + L S ++ ++ E+ Sbjct: 140 FLIECLADLKNNLMKRGLNLFIRH-----GKPEDILPSLARAFSAHTVYAQKETCSEELI 194 Query: 119 RDKLLEKRLQHRVICKSFDDSVLLPP-----GSILNH-------ALQMYKVYTPFRKALI 166 ++L+ K LQ + S D P GS + H A + VYT F K +I Sbjct: 195 VERLVSKALQRVNLPPSPDKFTSQPKLQLVWGSTMYHIDDLPFNANNIPDVYTQFPKCVI 254 Query: 167 QNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPM-FPIGEQNALHILRKFC-- 223 + ++ + P P + G V + + I M F GE AL + ++ Sbjct: 255 RGCLKIPVTLAPSPPVDDWGCVPSLDQLGLQPQKARFIKGMRFLGGETAALSRVYEYFWK 314 Query: 224 KEKVYYYVEQRD-IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWL 282 K+ + Y E R+ + +++ SP+L+ G LSPR + +K + + + L Sbjct: 315 KDLLKIYKETRNGMLGPDYSTKFSPWLASGSLSPRFIYEDVKR--YENERQANDSTYWVL 372 Query: 283 NELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQ 342 ELIWR+++R L Y + + E+ W++D L ++WK G TG+P+IDA M++ Sbjct: 373 FELIWRDYFRFLSVKYGNSLFHLGGVRKVER-SWSQDQKLFESWKDGCTGYPLIDANMKE 431 Query: 343 LNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDS 402 L+T G+M NR R I SFLV+D+ VDWR+G E+F + LLD D SN G W + A GND Sbjct: 432 LSTTGFMSNRGRQIVCSFLVRDMGVDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGNDP 491 Query: 403 VPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLP 459 R F+ Q + +DP+G ++ +WLP+L + H P + + L Y P Sbjct: 492 RED-RYFSIPKQAQIYDPEGEYVAYWLPQLQKLEKDRRHFPGKSYIEQIVPLKYGNP 547 >gi|161138112|gb|ABX58027.1| cryptochrome 1a [Triticum aestivum] Length = 700 Score = 167 bits (422), Expect = 5e-39, Method: Compositional matrix adjust. Identities = 143/475 (30%), Positives = 229/475 (48%), Gaps = 26/475 (5%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 +VW R DLR+ DN AL AA + +V+ ++ P++ + ++ SL + Sbjct: 20 VVWFRRDLRVEDNPALAAAARTA-GEVVPAYVWAPKEDGPYYPGRVSRWWLSQSLKHLDA 78 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL-QH 129 SL + G + S D++ L T LF+N Y+ + RD +++ L Sbjct: 79 SLRRLGATRLVTRRST--DTVAALLELVRSTGATHLFFNHLYDPLSLVRDHRVKQVLGAE 136 Query: 130 RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL-TGPV 188 + +SF+ +L P +L+ + ++TPF L D + +P R+ +G + Sbjct: 137 GITVQSFNSDLLYEPWEVLDDHGCPFTMFTPFWNTC---LCMVDPPAPMLPPKRINSGEL 193 Query: 189 T---PSNIPRFFDYPFQAIDPMFP----IGEQNALHILRKFCKEKVYYYVEQRDIPAIQG 241 + S+ F D + + + G QNA F + Y R Sbjct: 194 SRCCSSDDLIFEDESERGSNALLARAWSPGWQNADKAFTAFINGPLIDYSVNRKKADSAN 253 Query: 242 TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKP----KSGAFSWLNELIWREFYRHLMAF 297 TS LSPYL G LS R+ +++++ + + + + G +L + RE+ R L AF Sbjct: 254 TSLLSPYLHFGELSVRKVFHQIRMKQLTWSNESNGDGEEGCSLFLRSIGLREYSRRL-AF 312 Query: 298 YPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMIT 357 KP + W + + W+QG TG+P++DA MR+L GW+H+R+R++ Sbjct: 313 NHPCSHEKPLLAHLRFFPWVVNEVYFKVWRQGRTGYPLVDAGMRELWATGWLHDRIRVVV 372 Query: 358 ASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKR 417 +SF VK L + WR G +YF LLD DL S+ GWQ+ + + D RI NP +G + Sbjct: 373 SSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGSLPDGRELDRIDNPQFEGYK 432 Query: 418 FDPQGTFIRHWLPELNNVPTQYIH----APHSWLDKNDLSL--NYPLPIVDHKKA 466 FDP G ++R WLPEL +PT++IH AP S L + L NYPLPIV+ +A Sbjct: 433 FDPYGEYVRRWLPELARLPTEWIHHPWDAPESVLRAAGIELGSNYPLPIVELDEA 487 >gi|284052713|ref|ZP_06382923.1| DNA photolyase [Arthrospira platensis str. Paraca] gi|291567701|dbj|BAI89973.1| deoxyribopyrimidine photolyase [Arthrospira platensis NIES-39] Length = 490 Score = 167 bits (422), Expect = 5e-39, Method: Compositional matrix adjust. Identities = 136/495 (27%), Positives = 233/495 (47%), Gaps = 37/495 (7%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGIS-ARQSHFIYASLLQVQ 69 ++W RNDLR+ D++ L A ++ ++I ++ P Q+ + + F LL+ Sbjct: 9 ILWYRNDLRLHDHEPLDLAT-STQGQIIPLYCFDPRQFAKTSFGFPKTGGFRGKFLLESV 67 Query: 70 KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH 129 L + + + Q + ++Y+++ E+ + LEK L Sbjct: 68 ADLRHNFQKIGSNLLVRIGEPERVIFDLVKQLNIDAVYYHKEVTAEELAVETALEKALTP 127 Query: 130 -RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188 V KSF + L + ++ +++T FRK + Q V + P + + Sbjct: 128 LGVEVKSFWGATLYHLKELPFPIEKLPELFTNFRKQVEQKSVIYPPYTPPNQLPQFPD-I 186 Query: 189 TPSNIPRFFDY-----PFQAIDPM-FPIGEQNALHILRKFC--KEKVYYYVEQRD-IPAI 239 P IP + PF + F GE L L + ++ + Y + R+ + Sbjct: 187 EPGEIPTLTELGITPAPFDERSVLDFAGGETAGLSRLNDYFWRRDCLKNYKQTRNGMLGS 246 Query: 240 QGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLN-ELIWREFYRHLM--- 295 +S+ SP+L+ G LSPR + ++++ + K+ + WL EL+WR+++R + Sbjct: 247 DYSSKFSPWLANGCLSPRWIYQQVQDYQHQ---RVKNDSTYWLVFELLWRDYFRFICLKH 303 Query: 296 ---AFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNR 352 FY S G KI W ++ Q W QG TGFP++DA MR+L G+M NR Sbjct: 304 GPKVFYKSGLQGV-------KIPWGENWEQWQIWCQGLTGFPLVDANMRELAATGFMSNR 356 Query: 353 LRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPT 412 R ASFL K+L ++W++G E+F S L+D D+ SN G W + A GND FR FN Sbjct: 357 GRQNVASFLTKNLGINWQMGAEWFESVLIDYDVCSNWGNWNYTAGVGNDGRG-FRYFNIA 415 Query: 413 IQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND------LSLNYPLPIVDHKKA 466 Q + +DP G +++HWLPEL ++P +H+P ++ L ++YP P+VD +++ Sbjct: 416 KQSQDYDPMGDYVKHWLPELASIPDGRVHSPWRLSNQEQIRFGVRLGVDYPYPMVDLQES 475 Query: 467 CHHTLNQYYAAKKQS 481 Y A + + Sbjct: 476 VEANRRIYEKALRMT 490 >gi|327541206|gb|EGF27750.1| deoxyribodipyrimidine photolyase [Rhodopirellula baltica WH47] Length = 488 Score = 166 bits (421), Expect = 6e-39, Method: Compositional matrix adjust. Identities = 138/506 (27%), Positives = 229/506 (45%), Gaps = 50/506 (9%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQS-----HFI 61 M+ LVW RNDLR D++ A ++ + AV P Q+ + +++ F+ Sbjct: 1 MANALVWYRNDLRTIDHEPFLRA--STADRCFAVHCIDPRQFETTELGFQRTGPFRARFL 58 Query: 62 YASLLQVQKSLSQKG--IVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRR 119 SL ++ L G ++ + + L + + ++ + E Sbjct: 59 IESLTDLRSRLRSLGGELIVRVGRPETV------LQHLLPSLAIDAVHFHHEPGTEEADT 112 Query: 120 DKLLEKRL-QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLP 178 + +++ QH + L+ P + ++T FRK + + Q + RS Sbjct: 113 AESVQQLCDQHGIATHVAYGDTLIHPDELPFEIADTPGLFTDFRKEIEK---QCEARSPL 169 Query: 179 VPAIRLTGP----VTPSNIPRFFDYPFQAIDPM-------FPIGEQNALHILRKFC--KE 225 IR+ G V +IP + P+ F G+ A + ++ ++ Sbjct: 170 EEPIRIQGALPEEVNAGDIPTLESLGL-STPPLDDRCLNQFTGGQNAAQQRMEEYIWNED 228 Query: 226 KVYYYVEQRD-IPAIQGTSQLSPYLSIGVLSPRQCWNRLK---EEFVDLLIKPKSGAFSW 281 ++ Y E R+ + +S+ SP+L+ G LSPR + ++ EE V+ + Sbjct: 229 RLRVYKETRNGMLHPNDSSKFSPWLAQGCLSPRMIADHVRCYEEERVE-----NKSTYWM 283 Query: 282 LNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMR 341 + EL+WR+++R + + V + + ++W D L + W+ G TG+P++DA MR Sbjct: 284 IFELLWRDYFRWISRKH-GVTLFRTSGLRGVNVDWKSDRELFRRWQDGTTGYPLVDANMR 342 Query: 342 QLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGND 401 +L T G+M NR R ASFL K+L +DWR G +F SQL+D D+ASN G W +AA GND Sbjct: 343 ELRTTGYMSNRGRQNVASFLTKNLGIDWRWGARWFESQLVDYDVASNYGNWNYAAGVGND 402 Query: 402 SVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND------LSLN 455 + FR FN T Q + +D QG + +HWLPEL ++ IH P + L Sbjct: 403 ARG-FRFFNITKQSRDYDSQGEYAKHWLPELRDLDGTEIHEPWKMSPERQQEVGVTLGKE 461 Query: 456 YPLPIVDHKKACHHTLNQYYAAKKQS 481 YP PIVD + Y AK S Sbjct: 462 YPHPIVDLFDSAKENETTYMRAKAAS 487 >gi|23506659|gb|AAN37909.1| cryptochrome 2 apoprotein [Sorghum bicolor] Length = 691 Score = 166 bits (420), Expect = 7e-39, Method: Compositional matrix adjust. Identities = 145/479 (30%), Positives = 231/479 (48%), Gaps = 34/479 (7%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 +VW R DLR+ DN AL AA +V+ ++ +PE+ + +I SL + Sbjct: 19 VVWFRRDLRVEDNPALAAAARAG-GEVVPAYVWSPEEEGPYYPGRVSRWWISQSLKHLDA 77 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYE-INEVRRDKLLEKRLQH 129 SL + G + S D++ L T +++N Y+ I+ VR +L E Sbjct: 78 SLRRLGAGKLVTRRSA--DAVVALLQLVRDTGATHVYFNHLYDPISLVRDHRLKEMLAAE 135 Query: 130 RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG--- 186 ++ +SF+ +L P +++ Q + ++T F + +Q D + +P ++ Sbjct: 136 GIVVQSFNADLLYEPWEVVDDERQPFTMFTAFWNRCLS--MQYDPPAPLLPPKKINSGDL 193 Query: 187 PVTPSNIPRFFDYPFQAIDPMFPI----GEQNALHILRKFCKEKVYYYVEQRDIPAIQGT 242 + PS F D + + + G QNA L F + Y R T Sbjct: 194 SMCPSEDLIFEDDSERGSNALLARAWTPGWQNADKALTAFLNGPLADYSVNRKKADSAST 253 Query: 243 SQLSPYLSIGVLSPRQCWN--RLKEEFVDLLIKPKSGAFS-------WLNELIWREFYRH 293 S LSP+L G LS R+ ++ R+K+ L+ G + +L + RE+ R+ Sbjct: 254 SLLSPHLHFGELSVRKVFHLVRMKQ-----LVWSNEGNHAAEESCTLFLRSIGLREYSRY 308 Query: 294 LMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRL 353 L +PS +P + W + + W+QG TG+P++DA MR+L GW+H+R+ Sbjct: 309 LSFNHPS-SHERPLLAHLRFFPWVVNESYFKIWRQGRTGYPLVDAGMRELWATGWLHDRI 367 Query: 354 RMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTI 413 R++ +SF VK L + WR G +YF LLD DL S+ GWQ+ + DS RI NP Sbjct: 368 RVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYITGSLPDSRELDRIDNPQF 427 Query: 414 QGKRFDPQGTFIRHWLPELNNVPTQYIH----APHSWLDKNDLSL--NYPLPIVDHKKA 466 +G +FDP G ++R W+PEL +PT++IH AP S L + L NYPLPIV+ A Sbjct: 428 EGYKFDPHGEYVRRWIPELVRLPTEWIHHPWDAPVSVLQAAGIELGSNYPLPIVELDAA 486 >gi|56553448|gb|AAV97867.1| cryptochrome 2 [Sorghum bicolor] Length = 690 Score = 166 bits (420), Expect = 8e-39, Method: Compositional matrix adjust. Identities = 145/479 (30%), Positives = 232/479 (48%), Gaps = 34/479 (7%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 +VW R DLR+ DN AL AA +V+ ++ +PE+ + +I SL ++ Sbjct: 18 VVWFRRDLRVEDNPALAAAARAG-GEVVPAYVWSPEEEGPYYPGRVSRWWISQSLKRLDA 76 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYE-INEVRRDKLLEKRLQH 129 SL + G + S D++ L T +++N Y+ I+ VR +L E Sbjct: 77 SLRRLGAGKLVTRRSA--DAVVALLQLVRDTGATHVYFNHLYDPISLVRDHRLKEMLAAE 134 Query: 130 RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG--- 186 ++ +SF+ +L P +++ Q + ++T F + +Q D + +P ++ Sbjct: 135 GIVVQSFNADLLYEPWEVVDDEGQPFTMFTAFWNRCLS--MQYDPPAPLLPPKKINSGDL 192 Query: 187 PVTPSNIPRFFDYPFQAIDPMFPI----GEQNALHILRKFCKEKVYYYVEQRDIPAIQGT 242 + PS F D + + + G QNA L F + Y R T Sbjct: 193 SMCPSEDLIFEDDSERGSNALLARAWTPGWQNADKALTAFLNGPLADYSVNRKKADSAST 252 Query: 243 SQLSPYLSIGVLSPRQCWN--RLKEEFVDLLIKPKSGAFS-------WLNELIWREFYRH 293 S LSP+L G LS R+ ++ R+K+ L+ G + +L + RE+ R+ Sbjct: 253 SLLSPHLHFGELSVRKVFHLVRMKQ-----LVWSNEGNHAAEESCTLFLRSIGLREYSRY 307 Query: 294 LMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRL 353 L +PS +P + W + + W+QG TG+P++DA MR+L GW+H+R+ Sbjct: 308 LSFNHPS-SHERPLLAHLRFFPWVVNESYFKIWRQGRTGYPLVDAGMRELWATGWLHDRI 366 Query: 354 RMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTI 413 R++ +SF VK L + WR G +YF LLD DL S+ GWQ+ + DS RI NP Sbjct: 367 RVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYITGSLPDSRELDRIDNPQF 426 Query: 414 QGKRFDPQGTFIRHWLPELNNVPTQYIH----APHSWLDKNDLSL--NYPLPIVDHKKA 466 +G +FDP G ++R W+PEL +PT++IH AP S L + L NYPLPIV+ A Sbjct: 427 EGYKFDPHGEYVRRWIPELVRLPTEWIHHPWDAPVSVLQAAGIELGSNYPLPIVELDAA 485 >gi|330683891|gb|EGG95662.1| putative deoxyribodipyrimidine photo-lyase [Staphylococcus epidermidis VCU121] Length = 226 Score = 166 bits (420), Expect = 8e-39, Method: Compositional matrix adjust. Identities = 84/199 (42%), Positives = 119/199 (59%), Gaps = 5/199 (2%) Query: 222 FCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSW 281 F + +Y + D + S L YL+ G+L R+ N L E++ + ++ Sbjct: 33 FLNSNIAHYDKLTDDVSQDFVSGLGKYLAYGLLDIREIINDLLEDYE----SDEKNYEAF 88 Query: 282 LNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMR 341 + ++I+REFY LM YP K F ++W+ + + WK+G TG+PI+DAAM+ Sbjct: 89 IRDVIFREFYYVLMMQYPETAT-KSFSEKYRNMQWSYNKTHFEVWKKGQTGYPIVDAAMK 147 Query: 342 QLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGND 401 +LN G+MHNRLRM+ + FL K+L +DW GEEYF L+D D ASN GWQW+ASTG D Sbjct: 148 KLNRTGYMHNRLRMVVSQFLTKNLFIDWTWGEEYFRQYLIDYDNASNVHGWQWSASTGTD 207 Query: 402 SVPYFRIFNPTIQGKRFDP 420 VPYFR+FNP Q +RFD Sbjct: 208 EVPYFRMFNPIRQSERFDK 226 >gi|332662834|ref|YP_004445622.1| cryptochrome, DASH family [Haliscomenobacter hydrossis DSM 1100] gi|332331648|gb|AEE48749.1| cryptochrome, DASH family [Haliscomenobacter hydrossis DSM 1100] Length = 454 Score = 166 bits (419), Expect = 1e-38, Method: Compositional matrix adjust. Identities = 136/458 (29%), Positives = 215/458 (46%), Gaps = 43/458 (9%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHG------ISARQSHFIYAS 64 +VW R DLR+ DN+AL A N+ +VI VFI ++ ++ FI S Sbjct: 8 IVWFRQDLRLHDNEALQDALRNA-YEVIPVFIFDERTFKGKTSFGFPKTGKYRAQFIIES 66 Query: 65 LLQVQKSLSQ--KGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKL 122 + +++SL + ++ + + + L S + + + +F NR+ E R Sbjct: 67 VADLRQSLRKLNSDLIVRVGKTEDI------LFSMAKECKTSWIFCNRERTAEEARIQDE 120 Query: 123 LEKRLQHRVICKSFDDSVLLPPGSILNHALQMY-KVYTPFRKAL-----IQNLVQADLRS 176 LE RL ++ +L + L +Q V+T FRK + ++ + R+ Sbjct: 121 LENRLWSIGQEMRYNRGKMLYYTADLPFPIQHTPDVFTQFRKEVERIVPVREPLSKPDRT 180 Query: 177 LPVPAIRLTGPVTPS------NIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEK--VY 228 + PS N+ F P + F GE + L+ + E + Sbjct: 181 FNPLSFEFPAGDIPSLEELGHNVDDFAKDPRAVLS--FKGGETEGIKRLQYYLWETDLIK 238 Query: 229 YYVEQRD-IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFS---WLN- 283 Y E R+ + +S+LSP+L+ G LSP+ ++ LK+ + + GA WL Sbjct: 239 NYKETRNGLLGGDYSSKLSPWLAQGCLSPKLIYHELKK------YEAQRGANESTYWLFF 292 Query: 284 ELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQL 343 EL+WR+F+R + Y + W ++ +LQ W G TG P IDA M +L Sbjct: 293 ELLWRDFFRFMGKKYGNKIFQIGGTRGQADPRWTENPQVLQKWIDGTTGVPFIDANMLEL 352 Query: 344 NTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSV 403 G+M NR R ASFLVKDL ++W++G EYF S L+D D+ SN G W + A G+D Sbjct: 353 KHTGFMSNRGRQNVASFLVKDLNINWQMGAEYFESILIDYDVCSNWGNWNYIAGVGSDPR 412 Query: 404 PYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIH 441 R FN Q KR+DP G +++HWLPEL ++P +H Sbjct: 413 ED-RYFNTLTQAKRYDPHGDYVKHWLPELADLPADKVH 449 >gi|297582918|ref|YP_003698698.1| DASH family cryptochrome [Bacillus selenitireducens MLS10] gi|297141375|gb|ADH98132.1| cryptochrome, DASH family [Bacillus selenitireducens MLS10] Length = 478 Score = 165 bits (418), Expect = 1e-38, Method: Compositional matrix adjust. Identities = 140/482 (29%), Positives = 230/482 (47%), Gaps = 39/482 (8%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFI--ATPEQWRQHGISARQSH---FIYA 63 V+++W R+DLRI D++ L A H + + AVF+ A ++ G+ H F+ Sbjct: 4 VNVIWFRHDLRIHDHEPLRLA-HWAKEETEAVFVRDARMDEKVTPGLKRAGEHRERFLME 62 Query: 64 SLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLL 123 SL+ + SL +G+ F + I+WL ++ T +F + E R + + Sbjct: 63 SLVVLAGSLEAEGMPFTVLKGPVVKTMIDWL----TERGATDVFLHEHPGFEERRDLEEV 118 Query: 124 EKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNL-VQADLRSLPVPAI 182 ++ L H + + + + + +T FRK L +L + RS + Sbjct: 119 QRALPH-IHWHVSEGHTMFRRDQLPFSFSEFPMSFTMFRKRLEAHLRLPEKKRSFSYDSY 177 Query: 183 RLTGPVTPSNIPRFFDYPFQAI------------DPMFPIGEQNALHILRKFC--KEKVY 228 P + F A+ + GEQ AL LR + +++ Sbjct: 178 DTVTEAEPVFLSGKESGSFGAVRGSGDHIPHAGGQGIVRGGEQEALARLRSYVGNASRLF 237 Query: 229 YYVEQRD-IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDL-LIKPKSGAFSWLN-EL 285 Y E RD + A +S+LS +L+ G LSP++ + + +D+ ++ + WL EL Sbjct: 238 TYKETRDGMFAFDDSSKLSFWLANGSLSPKRVYRAI----LDMEAANGRNESSYWLFFEL 293 Query: 286 IWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNT 345 +WRE+++ LM + K + I W++D L QAWK G TGFP++DAAMR+L Sbjct: 294 LWREYFQWLMLATDARLFTKQGL-LDVAIVWHEDKALFQAWKDGETGFPLVDAAMRELKA 352 Query: 346 IGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPY 405 G+M NR R ASFL K+L ++W G YF QL+D D ASN G W + A G D + Sbjct: 353 TGYMSNRARQNAASFLTKNLGINWLWGARYFEEQLIDYDPASNYGNWAYQAGVGTD-LRE 411 Query: 406 FRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKK 465 R FN QG R+DP+G++ ++WL + +P ++ P K ++P PIVD ++ Sbjct: 412 LRAFNVIGQGIRYDPKGSYAKNWLHLPDTLPGHTVYDP----VKLSAHTDWPQPIVDLEE 467 Query: 466 AC 467 + Sbjct: 468 SL 469 >gi|147866138|emb|CAN79842.1| hypothetical protein VITISV_014519 [Vitis vinifera] Length = 584 Score = 165 bits (418), Expect = 1e-38, Method: Compositional matrix adjust. Identities = 137/465 (29%), Positives = 216/465 (46%), Gaps = 58/465 (12%) Query: 8 SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQH------GISARQSHFI 61 V +VW RNDLR+ DN+AL A +S A V+ V+ P + A ++ F+ Sbjct: 107 GVAIVWFRNDLRVLDNEALVKAWASSQA-VLPVYCVDPRLFGTTHYFGFPKTGALRAQFL 165 Query: 62 YASLLQVQKSLSQKGI--VFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRR 119 L ++++L +G+ + Q+ + E L S ++ +++ E+ Sbjct: 166 IECLADLKRNLMNRGLNLLIQHGKPE------EILPSLAKTFEAHTVYAHKETCSEELNV 219 Query: 120 DKLLEKRLQHRVICKSFDDSVLLPP----------GSILNH-------ALQMYKVYTPFR 162 ++L+ L+ V+ S S L GS + H + VYT FR Sbjct: 220 ERLVRNGLRQVVLPPSPGQSTSLSSSNHPKLQLIWGSTMYHIEDLPFSTSSLPDVYTQFR 279 Query: 163 KALIQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKF 222 K++ P L GP P NI D+ + F GE AL R Sbjct: 280 KSVESKCTIRICIRTPT----LLGP--PPNIE---DWGSVSRGMRFIGGEAAALS--RDL 328 Query: 223 CKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWL 282 K Y + + +++ SP+L+ G LSPR + +K + + + L Sbjct: 329 LK---VYKATRNGMLGADYSTKFSPWLASGSLSPRFIYQEVKR--YEKERQANDSTYWVL 383 Query: 283 NELIWREFYRHLMAFYPSVC--MGKPFIPWTEKIE--WNKDSHLLQAWKQGYTGFPIIDA 338 ELIWR+++R L Y + +G P K+E W++D + +AW+ G TG+P+IDA Sbjct: 384 FELIWRDYFRFLSVKYRNSLFHLGGP-----RKVEARWSQDQTMFEAWRDGCTGYPLIDA 438 Query: 339 AMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAAST 398 M++L+ G+M NR R I SFLV+D+ +DWR+G E+F + LLD D SN G W + A Sbjct: 439 NMKELSATGFMSNRGRQIVCSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGV 498 Query: 399 GNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAP 443 GND R F+ Q K +DP+G ++ WLPEL +P + P Sbjct: 499 GNDPRED-RYFSIPKQAKTYDPEGEYVAFWLPELQALPNDKRNFP 542 >gi|293337104|ref|NP_001170477.1| LOC100384475 [Zea mays] gi|226452137|gb|ACO59248.1| cryptochrome 1 [Zea mays] Length = 699 Score = 165 bits (417), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 141/483 (29%), Positives = 225/483 (46%), Gaps = 43/483 (8%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 +VW R DLR+ DN AL AA + +V+ ++ PE+ + ++ SL + Sbjct: 19 VVWFRRDLRVEDNPALAAAPRAA-GEVVPAYVWAPEEDGPYYPGRVSRWWLSQSLKHLDA 77 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130 SL + G + S+ D++ L T LF+N Y+ + RD ++++L Sbjct: 78 SLRRLGACRLVTRRSS--DAVVALIDLVRSTGATHLFFNHLYDPLSLVRDHRVKEQLAAE 135 Query: 131 VI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALI------------QNLVQADLRSL 177 I +SF+ +L P +L+ + + ++ PF + + + DL Sbjct: 136 GIDVQSFNADLLYEPWEVLDEDRRPFTMFAPFWNRCLCMPDPAAPLLPPKRINSGDLSRC 195 Query: 178 PVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFP----IGEQNALHILRKFCKEKVYYYVEQ 233 P + F D + + + G QNA L F + Y Sbjct: 196 PWDELV------------FEDESERGSNALLARAWSPGWQNADKALTAFLNGPLMDYSVN 243 Query: 234 RDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFV----DLLIKPKSGAFSWLNELIWRE 289 R TS LSPYL G LS R+ +++++ + + D + +L + RE Sbjct: 244 RKKADSASTSLLSPYLHFGELSVRKVFHQVRMKQLMWSNDGNHAGEESCTLFLRSIGLRE 303 Query: 290 FYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWM 349 + R+L +P KP + W + + W+QG TG+P++DA MR+L GW+ Sbjct: 304 YSRYLTFNHP-CSHEKPLLSHLRFFPWVVNEVYFKVWRQGRTGYPLVDAGMRELWATGWV 362 Query: 350 HNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIF 409 H+R+R++ +SF VK L + WR G +YF LLD DL S+ GWQ+ + + D RI Sbjct: 363 HDRIRVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGSLPDGRELDRID 422 Query: 410 NPTIQGKRFDPQGTFIRHWLPELNNVPTQYIH----APHSWLDKNDLSL--NYPLPIVDH 463 NP +G +FDP G ++R WLPEL +PT++IH AP S L + L NYPLPIV+ Sbjct: 423 NPQFEGYKFDPHGEYVRRWLPELARLPTEWIHHPWDAPESVLQAAGIELGSNYPLPIVEL 482 Query: 464 KKA 466 A Sbjct: 483 DAA 485 >gi|242096612|ref|XP_002438796.1| hypothetical protein SORBIDRAFT_10g026420 [Sorghum bicolor] gi|241917019|gb|EER90163.1| hypothetical protein SORBIDRAFT_10g026420 [Sorghum bicolor] Length = 577 Score = 165 bits (417), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 139/484 (28%), Positives = 227/484 (46%), Gaps = 63/484 (13%) Query: 6 AMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHG-------ISARQS 58 V +VW RNDLR+ DN+AL A S+A V+ V+ P + A ++ Sbjct: 76 GAGVAVVWFRNDLRVLDNEALLRAWSASEA-VLPVYCVDPRVFAGSTHYFGFPKTGALRA 134 Query: 59 HFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVR 118 F+ L +++ L +KG+ E L S ++ +++ E+ Sbjct: 135 QFLIECLGDLKQILRKKGLDLLVRH----GKPEEILPSIAKAVSAHTIYAHKETCSEELL 190 Query: 119 RDKLLEKRLQHRVIC--------KSFDDSVLLPPGSILNH-------ALQMYKVYTPFRK 163 ++L+ K L+ I K + + L G+ + H + VYT FRK Sbjct: 191 VERLVSKGLEQVQIAQGGASVPKKPLNPRLQLIWGATMYHIDDLPFPVSNLPDVYTQFRK 250 Query: 164 ALIQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPM---------------F 208 A+ + LP P++ GP+ S+I + AI + F Sbjct: 251 AVESKSSVRNCTKLP-PSL---GPLPSSSIDEIGGW--GAIPTLESLGLSVTKSEKGMHF 304 Query: 209 PIGEQNALHILRKFCKEKVY---YYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKE 265 GE AL + ++ +K Y V + + +++ SP+L+ G LSPR +K Sbjct: 305 IGGENAALGRVHEYFWKKDQLKDYKVTRNGMLGPDYSTKFSPWLASGSLSPRYICEEVKR 364 Query: 266 EFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVC--MGKPFIPWTEKI--EWNKDSH 321 + + + L ELIWR+++R L A Y + +G P K+ +W++D Sbjct: 365 YEKQRVANDST--YWVLFELIWRDYFRFLSAKYGNTIFHLGGP-----RKVVSKWSQDQA 417 Query: 322 LLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLL 381 L ++W+ G TG+P+IDA MR+L+ G+M NR R I SFLV+D+ +DWR+G E+F + LL Sbjct: 418 LFESWRDGRTGYPLIDANMRELSATGFMSNRGRQIVCSFLVRDMGIDWRMGAEWFETCLL 477 Query: 382 DGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIH 441 D D ASN G W + A GND R F+ Q K +DP+G ++ +WLPEL ++ + + Sbjct: 478 DYDPASNYGNWTYGAGVGNDPRED-RYFSIPKQAKSYDPEGEYVAYWLPELRSLAKERRN 536 Query: 442 APHS 445 P + Sbjct: 537 FPGA 540 >gi|225429814|ref|XP_002280771.1| PREDICTED: hypothetical protein [Vitis vinifera] Length = 549 Score = 165 bits (417), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 138/480 (28%), Positives = 222/480 (46%), Gaps = 67/480 (13%) Query: 8 SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQH------GISARQSHFI 61 V +VW RNDLR+ DN+AL A +S A V+ V+ P + A ++ F+ Sbjct: 51 GVAIVWFRNDLRVLDNEALVKAWASSQA-VLPVYCVDPRLFGTTHYFGFPKTGALRAQFL 109 Query: 62 YASLLQVQKSLSQKGI--VFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRR 119 L ++++L +G+ + Q+ + E L S ++ +++ E+ Sbjct: 110 IECLADLKRNLMNRGLNLLIQHGKPE------EILPSLAKTFEAHTVYAHKETCSEELNV 163 Query: 120 DKLLEKRLQHRVICKSFDDSVLLPP----------GSILNH-------ALQMYKVYTPFR 162 ++L+ L+ V+ S S L GS + H + VYT FR Sbjct: 164 ERLVRNGLRQVVLPPSPGQSTSLSSSNHPKLQLIWGSTMYHIEDLPFSTSSLPDVYTQFR 223 Query: 163 KALIQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPM------------FPI 210 K++ P L GP P NI + P +ID + F Sbjct: 224 KSVESKCTIRICIRTPT----LLGP--PPNIEDWGSVP--SIDQLGLHEEKVSRGMRFIG 275 Query: 211 GEQNALHILRKFCKEK---VYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEF 267 GE AL + ++ +K Y + + +++ SP+L+ G LSPR + +K Sbjct: 276 GEAAALSRVNEYFWKKDLLKVYKATRNGMLGADYSTKFSPWLASGSLSPRFIYQEVKR-- 333 Query: 268 VDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVC--MGKPFIPWTEKIE--WNKDSHLL 323 + + + L ELIWR+++R L Y + +G P K+E W++D + Sbjct: 334 YEKERQANDSTYWVLFELIWRDYFRFLSVKYRNSLFHLGGP-----RKVEARWSQDQTMF 388 Query: 324 QAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDG 383 +AW+ G TG+P+IDA M++L+ G+M NR R I SFLV+D+ +DWR+G E+F + LLD Sbjct: 389 EAWRDGCTGYPLIDANMKELSATGFMSNRGRQIVCSFLVRDMGIDWRMGAEWFETCLLDY 448 Query: 384 DLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAP 443 D SN G W + A GND R F+ Q K +DP+G ++ WLPEL +P + P Sbjct: 449 DPCSNYGNWTYGAGVGNDPRED-RYFSIPKQAKTYDPEGEYVAFWLPELQALPNDKRNFP 507 >gi|50914603|ref|YP_060575.1| deoxyribodipyrimidine photolyase [Streptococcus pyogenes MGAS10394] gi|50903677|gb|AAT87392.1| Deoxyribodipyrimidine photolyase [Streptococcus pyogenes MGAS10394] Length = 368 Score = 165 bits (417), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 126/384 (32%), Positives = 187/384 (48%), Gaps = 40/384 (10%) Query: 6 AMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASL 65 ++ V ++W R DLRI KAL A S + + VF EQ S QS FI S+ Sbjct: 10 SVMVSVMWFRRDLRIDVQKALAHAI-ASQSPTLCVFQFNKEQLNLLH-SRNQSSFI-TSV 66 Query: 66 LQVQKSLSQKGIVFQYHQCSNFDDSIEWLD-SYCLQQRVTKL-------FYNRQYEINEV 117 L +K L +C D + + D C +Q +T+L F + + Sbjct: 67 LAFRKLL----------KCEGIDLYLMYGDLMTCFEQLLTQLKDWTDVYFNYDESGYGRL 116 Query: 118 RRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSL 177 R K + ++ + ++ D L I+N + Q YKV+TP+ + + QN + + Sbjct: 117 RDQKAAQFFKKNGIAVHTYQDHYLHGSQEIINQSGQPYKVFTPYYR-IWQNYPKETPIKV 175 Query: 178 PVPAIRLTGPVTPSNIPRFF----DYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQ 233 + R TP ++ R D +Q + +Q L +F ++++ Y Sbjct: 176 ELSQGRWLNLETPDDVLRTVESIKDEKYQDVATFDEASKQ-----LNRFIQDQLAAYHAN 230 Query: 234 RDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKS-GAFSWLNELIWREFYR 292 RD PA GTS+LSP+L IG + R ++ +++ P S G ++L EL WR+FY Sbjct: 231 RDFPAQLGTSRLSPFLRIGAIGIRTVYHAVRQ-------APNSLGQATFLKELAWRDFYN 283 Query: 293 HLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNR 352 + YP +P +IEW + Q WK+G TG+PI+DAAM QL GWMHNR Sbjct: 284 MVYVAYPDQ-KTQPIQKAFSQIEWVNNPDWFQLWKEGKTGYPIVDAAMLQLQKTGWMHNR 342 Query: 353 LRMITASFLVKDLLVDWRIGEEYF 376 LRMI ASFL KDLL DWR+GE+YF Sbjct: 343 LRMIVASFLTKDLLCDWRLGEQYF 366 >gi|296081780|emb|CBI20785.3| unnamed protein product [Vitis vinifera] Length = 586 Score = 164 bits (416), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 138/480 (28%), Positives = 222/480 (46%), Gaps = 67/480 (13%) Query: 8 SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQH------GISARQSHFI 61 V +VW RNDLR+ DN+AL A +S A V+ V+ P + A ++ F+ Sbjct: 88 GVAIVWFRNDLRVLDNEALVKAWASSQA-VLPVYCVDPRLFGTTHYFGFPKTGALRAQFL 146 Query: 62 YASLLQVQKSLSQKGI--VFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRR 119 L ++++L +G+ + Q+ + E L S ++ +++ E+ Sbjct: 147 IECLADLKRNLMNRGLNLLIQHGKPE------EILPSLAKTFEAHTVYAHKETCSEELNV 200 Query: 120 DKLLEKRLQHRVICKSFDDSVLLPP----------GSILNH-------ALQMYKVYTPFR 162 ++L+ L+ V+ S S L GS + H + VYT FR Sbjct: 201 ERLVRNGLRQVVLPPSPGQSTSLSSSNHPKLQLIWGSTMYHIEDLPFSTSSLPDVYTQFR 260 Query: 163 KALIQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPM------------FPI 210 K++ P L GP P NI + P +ID + F Sbjct: 261 KSVESKCTIRICIRTPT----LLGP--PPNIEDWGSVP--SIDQLGLHEEKVSRGMRFIG 312 Query: 211 GEQNALHILRKFCKEK---VYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEF 267 GE AL + ++ +K Y + + +++ SP+L+ G LSPR + +K Sbjct: 313 GEAAALSRVNEYFWKKDLLKVYKATRNGMLGADYSTKFSPWLASGSLSPRFIYQEVKR-- 370 Query: 268 VDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVC--MGKPFIPWTEKIE--WNKDSHLL 323 + + + L ELIWR+++R L Y + +G P K+E W++D + Sbjct: 371 YEKERQANDSTYWVLFELIWRDYFRFLSVKYRNSLFHLGGP-----RKVEARWSQDQTMF 425 Query: 324 QAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDG 383 +AW+ G TG+P+IDA M++L+ G+M NR R I SFLV+D+ +DWR+G E+F + LLD Sbjct: 426 EAWRDGCTGYPLIDANMKELSATGFMSNRGRQIVCSFLVRDMGIDWRMGAEWFETCLLDY 485 Query: 384 DLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAP 443 D SN G W + A GND R F+ Q K +DP+G ++ WLPEL +P + P Sbjct: 486 DPCSNYGNWTYGAGVGNDPRED-RYFSIPKQAKTYDPEGEYVAFWLPELQALPNDKRNFP 544 >gi|308080350|ref|NP_001183937.1| cryptochrome 2 [Zea mays] gi|257802570|gb|ACV66337.1| cryptochrome 2 [Zea mays] Length = 643 Score = 164 bits (416), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 141/479 (29%), Positives = 227/479 (47%), Gaps = 35/479 (7%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 +VW R DLR+ DN AL AA + +V+ ++ +PE+ + ++ SL + Sbjct: 19 VVWFRRDLRVEDNPALAAAARTA-GEVVPAYVWSPEEDGPYYPGRVSRWWLSQSLKHLDA 77 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130 SL + G + S+ D++ L T LF+NR Y+ + RD ++++L Sbjct: 78 SLRRLGACRLVTRRSS--DAVVALIDLVRSTGATHLFFNRLYDPLSLVRDHRVKEQLSAE 135 Query: 131 -VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALI------------QNLVQADLRSL 177 + +SF+ +L P +L+ + ++ PF + + + DL Sbjct: 136 GITVQSFNADLLYEPWEVLDDDGFPFTMFAPFWNRCLCMPDPAAPLLPPKRINSGDLSRC 195 Query: 178 PVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIP 237 P + + +A P G QNA L F + Y Sbjct: 196 PWDELIFEDESEKGSNALLA----RAWSP----GWQNADKALTAFLDGPLVDYSANHKKA 247 Query: 238 AIQGTSQLSPYLSIGVLSPRQCWNRLK-EEFVDLLIKPKSGAFS---WLNELIWREFYRH 293 TS LSPYL G LS R+ +++++ ++ + ++G S +L + RE+ R+ Sbjct: 248 DSASTSLLSPYLHFGELSVRKVFHQVRMKQLMWSNDGDRAGEESCTLFLRAIGLREYSRY 307 Query: 294 LMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRL 353 L +P + KP + W D + W+QG TG+P++DA MR+L GW+H+R+ Sbjct: 308 LTFNHP-CSLEKPLLSHLRFFPWVVDEVHFKVWRQGRTGYPLVDAGMRELWATGWVHDRI 366 Query: 354 RMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTI 413 R++ +SF VK L + WR G +YF LLD DL S+ GWQ+ + + D RI NP Sbjct: 367 RVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGSLPDGRELDRIDNPQF 426 Query: 414 QGKRFDPQGTFIRHWLPELNNVPTQYIH----APHSWLDKNDLSL--NYPLPIVDHKKA 466 +G +FDP G ++R WLPEL +PT++IH AP S L + L NYP PIV+ A Sbjct: 427 EGYKFDPHGEYVRRWLPELARLPTEWIHHPWDAPESVLQAAGVELGSNYPRPIVELDAA 485 >gi|22327046|ref|NP_568461.2| CRY3 (cryptochrome 3); DNA binding / DNA photolyase/ FMN binding [Arabidopsis thaliana] gi|119390180|pdb|2IJG|X Chain X, Crystal Structure Of Cryptochrome 3 From Arabidopsis Thaliana gi|238828067|pdb|2VTB|A Chain A, Structure Of Cryptochrome 3 - Dna Complex gi|238828069|pdb|2VTB|C Chain C, Structure Of Cryptochrome 3 - Dna Complex gi|238828070|pdb|2VTB|D Chain D, Structure Of Cryptochrome 3 - Dna Complex gi|238828071|pdb|2VTB|E Chain E, Structure Of Cryptochrome 3 - Dna Complex gi|238828072|pdb|2VTB|F Chain F, Structure Of Cryptochrome 3 - Dna Complex gi|18086429|gb|AAL57669.1| AT5g24850/F6A4_60 [Arabidopsis thaliana] gi|20857182|gb|AAM26705.1| AT5g24850/F6A4_60 [Arabidopsis thaliana] gi|332005986|gb|AED93369.1| cryptochrome DASH [Arabidopsis thaliana] Length = 526 Score = 164 bits (415), Expect = 3e-38, Method: Compositional matrix adjust. Identities = 130/464 (28%), Positives = 222/464 (47%), Gaps = 45/464 (9%) Query: 6 AMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQH------GISARQSH 59 V ++W RNDLR+ DN ALY A +SD ++ V+ P + A + Sbjct: 39 GKGVTILWFRNDLRVLDNDALYKAWSSSDT-ILPVYCLDPRLFHTTHFFNFPKTGALRGG 97 Query: 60 FIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRR 119 F+ L+ ++K+L ++G+ E L S +F +++ EV Sbjct: 98 FLMECLVDLRKNLMKRGLNLLIRSGK----PEEILPSLAKDFGARTVFAHKETCSEEVDV 153 Query: 120 DKLLE---KRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKAL-----IQNLVQ 171 ++L+ KR+ + + S + + + VYT FRK++ I++ + Sbjct: 154 ERLVNQGLKRVGNSTKLELIWGSTMYHKDDLPFDVFDLPDVYTQFRKSVEAKCSIRSSTR 213 Query: 172 ADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKF----CKEKV 227 L P P++ G V + + P + M +G ++A + R F K+ + Sbjct: 214 IPLSLGPTPSVDDWGDV--PTLEKLGVEPQEVTRGMRFVGGESA-GVGRVFEYFWKKDLL 270 Query: 228 YYYVEQRD-IPAIQGTSQLSPYLSIGVLSPRQCWN---RLKEEFVDLLIKPKSGAFSWLN 283 Y E R+ + +++ SP+L+ G +SPR + R ++E V + + L Sbjct: 271 KVYKETRNGMLGPDYSTKFSPWLAFGCISPRFIYEEVQRYEKERV-----ANNSTYWVLF 325 Query: 284 ELIWREFYRHLMAFYPSVCMGKPFI----PWTEKIEWNKDSHLLQAWKQGYTGFPIIDAA 339 ELIWR+++R L S+ G P + +W++D L ++W+ TG+P+IDA Sbjct: 326 ELIWRDYFRFL-----SIKCGNSLFHLGGPRNVQGKWSQDQKLFESWRDAKTGYPLIDAN 380 Query: 340 MRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTG 399 M++L+T G+M NR R I SFLV+D+ +DWR+G E+F + LLD D SN G W + A G Sbjct: 381 MKELSTTGFMSNRGRQIVCSFLVRDMGLDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVG 440 Query: 400 NDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAP 443 ND R F+ Q + +DP+G ++ WL +L +P + H P Sbjct: 441 NDPRED-RYFSIPKQAQNYDPEGEYVAFWLQQLRRLPKEKRHWP 483 >gi|97047673|sp|Q84KJ5|CRYD_ARATH RecName: Full=Cryptochrome DASH, chloroplastic/mitochondrial; AltName: Full=Cryptochrome-3; Flags: Precursor Length = 569 Score = 164 bits (415), Expect = 3e-38, Method: Compositional matrix adjust. Identities = 130/464 (28%), Positives = 222/464 (47%), Gaps = 45/464 (9%) Query: 6 AMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQH------GISARQSH 59 V ++W RNDLR+ DN ALY A +SD ++ V+ P + A + Sbjct: 82 GKGVTILWFRNDLRVLDNDALYKAWSSSDT-ILPVYCLDPRLFHTTHFFNFPKTGALRGG 140 Query: 60 FIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRR 119 F+ L+ ++K+L ++G+ E L S +F +++ EV Sbjct: 141 FLMECLVDLRKNLMKRGLNLLIRSGK----PEEILPSLAKDFGARTVFAHKETCSEEVDV 196 Query: 120 DKLLE---KRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKAL-----IQNLVQ 171 ++L+ KR+ + + S + + + VYT FRK++ I++ + Sbjct: 197 ERLVNQGLKRVGNSTKLELIWGSTMYHKDDLPFDVFDLPDVYTQFRKSVEAKCSIRSSTR 256 Query: 172 ADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKF----CKEKV 227 L P P++ G V + + P + M +G ++A + R F K+ + Sbjct: 257 IPLSLGPTPSVDDWGDV--PTLEKLGVEPQEVTRGMRFVGGESA-GVGRVFEYFWKKDLL 313 Query: 228 YYYVEQRD-IPAIQGTSQLSPYLSIGVLSPRQCWN---RLKEEFVDLLIKPKSGAFSWLN 283 Y E R+ + +++ SP+L+ G +SPR + R ++E V + + L Sbjct: 314 KVYKETRNGMLGPDYSTKFSPWLAFGCISPRFIYEEVQRYEKERV-----ANNSTYWVLF 368 Query: 284 ELIWREFYRHLMAFYPSVCMGKPFI----PWTEKIEWNKDSHLLQAWKQGYTGFPIIDAA 339 ELIWR+++R L S+ G P + +W++D L ++W+ TG+P+IDA Sbjct: 369 ELIWRDYFRFL-----SIKCGNSLFHLGGPRNVQGKWSQDQKLFESWRDAKTGYPLIDAN 423 Query: 340 MRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTG 399 M++L+T G+M NR R I SFLV+D+ +DWR+G E+F + LLD D SN G W + A G Sbjct: 424 MKELSTTGFMSNRGRQIVCSFLVRDMGLDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVG 483 Query: 400 NDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAP 443 ND R F+ Q + +DP+G ++ WL +L +P + H P Sbjct: 484 NDPRED-RYFSIPKQAQNYDPEGEYVAFWLQQLRRLPKEKRHWP 526 >gi|150261312|pdb|2J4D|A Chain A, Cryptochrome 3 From Arabidopsis Thaliana gi|150261313|pdb|2J4D|B Chain B, Cryptochrome 3 From Arabidopsis Thaliana gi|28971609|dbj|BAC65244.1| cryptochrome dash [Arabidopsis thaliana] Length = 525 Score = 164 bits (415), Expect = 3e-38, Method: Compositional matrix adjust. Identities = 130/464 (28%), Positives = 222/464 (47%), Gaps = 45/464 (9%) Query: 6 AMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQH------GISARQSH 59 V ++W RNDLR+ DN ALY A +SD ++ V+ P + A + Sbjct: 38 GKGVTILWFRNDLRVLDNDALYKAWSSSDT-ILPVYCLDPRLFHTTHFFNFPKTGALRGG 96 Query: 60 FIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRR 119 F+ L+ ++K+L ++G+ E L S +F +++ EV Sbjct: 97 FLMECLVDLRKNLMKRGLNLLIRSGK----PEEILPSLAKDFGARTVFAHKETCSEEVDV 152 Query: 120 DKLLE---KRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKAL-----IQNLVQ 171 ++L+ KR+ + + S + + + VYT FRK++ I++ + Sbjct: 153 ERLVNQGLKRVGNSTKLELIWGSTMYHKDDLPFDVFDLPDVYTQFRKSVEAKCSIRSSTR 212 Query: 172 ADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKF----CKEKV 227 L P P++ G V + + P + M +G ++A + R F K+ + Sbjct: 213 IPLSLGPTPSVDDWGDV--PTLEKLGVEPQEVTRGMRFVGGESA-GVGRVFEYFWKKDLL 269 Query: 228 YYYVEQRD-IPAIQGTSQLSPYLSIGVLSPRQCWN---RLKEEFVDLLIKPKSGAFSWLN 283 Y E R+ + +++ SP+L+ G +SPR + R ++E V + + L Sbjct: 270 KVYKETRNGMLGPDYSTKFSPWLAFGCISPRFIYEEVQRYEKERV-----ANNSTYWVLF 324 Query: 284 ELIWREFYRHLMAFYPSVCMGKPFI----PWTEKIEWNKDSHLLQAWKQGYTGFPIIDAA 339 ELIWR+++R L S+ G P + +W++D L ++W+ TG+P+IDA Sbjct: 325 ELIWRDYFRFL-----SIKCGNSLFHLGGPRNVQGKWSQDQKLFESWRDAKTGYPLIDAN 379 Query: 340 MRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTG 399 M++L+T G+M NR R I SFLV+D+ +DWR+G E+F + LLD D SN G W + A G Sbjct: 380 MKELSTTGFMSNRGRQIVCSFLVRDMGLDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVG 439 Query: 400 NDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAP 443 ND R F+ Q + +DP+G ++ WL +L +P + H P Sbjct: 440 NDPRED-RYFSIPKQAQNYDPEGEYVAFWLQQLRRLPKEKRHWP 482 >gi|218191029|gb|EEC73456.1| hypothetical protein OsI_07758 [Oryza sativa Indica Group] gi|222623102|gb|EEE57234.1| hypothetical protein OsJ_07222 [Oryza sativa Japonica Group] Length = 719 Score = 164 bits (414), Expect = 4e-38, Method: Compositional matrix adjust. Identities = 143/485 (29%), Positives = 226/485 (46%), Gaps = 36/485 (7%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 +VW R DLR+ DN AL AA + +V+ V++ PE+ + ++ SL + Sbjct: 21 VVWFRRDLRVEDNPALAAAARAA-GEVVPVYVWAPEEDGPYYPGRVSRWWLSQSLKHLDA 79 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQY----------EINEVRRD 120 SL + G + S D++ L T LF+N Y ++ VR Sbjct: 80 SLRRLGASRLVTRRSA--DAVVALIELVRSIGATHLFFNHLYGSIDPEFQIDPLSLVRDH 137 Query: 121 KLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPF--RKALIQNLVQADLRSLP 178 ++ + +SF+ +L P +++ + ++ PF R + + L Sbjct: 138 RVKALLTAEGIAVQSFNADLLYEPWEVVDDDGCPFTMFAPFWDRCLCMPDPAAPLLPPKR 197 Query: 179 VPAIRLTGPVTPSNIPRFFDYPFQAIDPMFP----IGEQNALHILRKFCKEKVYYYVEQR 234 + L PS+ F D + + + G QNA L F + Y R Sbjct: 198 IAPGELPARRCPSDELVFEDESERGSNALLARAWSPGWQNADKALAAFLNGPLMDYSVNR 257 Query: 235 DIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFS-------WLNELIW 287 TS LSPYL G LS R+ +++++ + L+ G + +L + Sbjct: 258 KKADSASTSLLSPYLHFGELSVRKVFHQVR---MKQLMWSNEGNHAGDESCVLFLRSIGL 314 Query: 288 REFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIG 347 RE+ R+L +P + KP + W D + W+QG TG+P++DA MR+L G Sbjct: 315 REYSRYLTFNHP-CSLEKPLLAHLRFFPWVVDEVYFKVWRQGRTGYPLVDAGMRELWATG 373 Query: 348 WMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFR 407 W+H+R+R++ +SF VK L + WR G +YF LLD DL S+ GWQ+ + + D R Sbjct: 374 WLHDRIRVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGSLPDGRELDR 433 Query: 408 IFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIH----APHSWLDKNDLSL--NYPLPIV 461 I NP ++G +FDP G ++R WLPEL +PT++IH AP S L + L NYPLPIV Sbjct: 434 IDNPQLEGYKFDPHGEYVRRWLPELARLPTEWIHHPWDAPESVLQAAGIELGSNYPLPIV 493 Query: 462 DHKKA 466 + A Sbjct: 494 ELDAA 498 >gi|328675520|gb|AEB28195.1| Deoxyribodipyrimidine photolyase [Francisella cf. novicida 3523] Length = 499 Score = 163 bits (412), Expect = 7e-38, Method: Compositional matrix adjust. Identities = 140/485 (28%), Positives = 221/485 (45%), Gaps = 35/485 (7%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 + +VW + DLRI DN AL A D V+ ++I PE W+Q +S RQ F+ L ++ Sbjct: 1 MQVVWFKRDLRINDNLALSLASEKGD--VLPLYIIEPELWQQPDMSYRQYLFLSECLEEL 58 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEIN-EVRRDKLLEKRL 127 L++ G D++E + + V ++ + + N +RD LEK Sbjct: 59 NTELTKLGQSL----IIMVGDAVEIFEQLIQKYSVKNIWSHEETWNNWTYQRDIKLEKFF 114 Query: 128 QHRVIC--KSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185 + I + + + V+ AL + K + + L++A L T Sbjct: 115 KQNNITWHQPYQNGVVRCLADRDKWALL-------WHKRMSEKLIKAPT-ELKFICENQT 166 Query: 186 GPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIP--AIQGTS 243 T N+ +D ++ G AL IL F E+ Y ++ P A + S Sbjct: 167 KIPTAENLGLEYDNSYKRQKG----GRIRALRILDSFLYERGCGYTKEMSSPVTAFKSCS 222 Query: 244 QLSPYLSIGVLSPRQCW---NRLKEEFVDLLIKPK----SGAFSWLNELIWREFYRHLMA 296 +LSPY++ GV+S ++ + N+ K E D IK K S S+L+ L W + + Sbjct: 223 RLSPYIAFGVISIKEVYQLANQRKNEIKDSSIKNKTKWLSAMRSFLSRLRWHCHFMQKLE 282 Query: 297 FYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMI 356 PS+ + + + + +AWK G TG+P+IDA MR L GW++ R+R + Sbjct: 283 DQPSIEYKNLHPAYNQLRKEPINKQYFEAWKTGNTGYPMIDACMRALIATGWLNFRMRAM 342 Query: 357 TASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGK 416 SF L +DWRI Y D + + Q +G + RI+NP Q Sbjct: 343 LMSFASYHLWLDWRITSLYLARLFTDYEPGIHYS--QVQMQSGTTGINSIRIYNPIKQSI 400 Query: 417 RFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYA 476 DP G FIR W+PEL NV + IH P WL+K++ +++YP PIVD K+A + Y Sbjct: 401 DQDPNGEFIRRWVPELENVTDENIHTP--WLEKHN-AVDYPDPIVDEKQARKFAADNVYK 457 Query: 477 AKKQS 481 +K S Sbjct: 458 IRKNS 462 >gi|224032111|gb|ACN35131.1| unknown [Zea mays] Length = 495 Score = 162 bits (411), Expect = 8e-38, Method: Compositional matrix adjust. Identities = 97/264 (36%), Positives = 143/264 (54%), Gaps = 15/264 (5%) Query: 211 GEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDL 270 G +NA ++L +F + Y E TS LSPYL G LS R + +K V Sbjct: 55 GWRNAENMLEEFVSYGLLEYSEHGMKVGGSTTSLLSPYLHFGELSVRMIYQLVKMRQVKW 114 Query: 271 LIKPKSGAFS----WLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAW 326 + KS A +L + +RE+ R+L YP + F+ + W D ++W Sbjct: 115 QNEGKSEAEESVRLFLRSIGFREYSRYLCFNYP-FTHERSFLGNLKHYPWLLDEGRFKSW 173 Query: 327 KQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLA 386 +QG TG+P++DA MR+L GW HNR+R+I +SF VK L + W G +YF LLD DL Sbjct: 174 RQGMTGYPLVDAGMRELWATGWTHNRIRVIVSSFAVKFLQIPWIWGMKYFWDVLLDADLE 233 Query: 387 SNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSW 446 S+ GWQ+ + + D R+ NP +QG+++DP G ++R W+PEL +PT++IH+P W Sbjct: 234 SDILGWQYISGSLPDGHELSRLDNPEVQGQKYDPDGEYVRTWIPELARMPTEWIHSP--W 291 Query: 447 LDKN--------DLSLNYPLPIVD 462 N +L NYP PIV+ Sbjct: 292 AAPNSILQVAGVELGFNYPKPIVE 315 >gi|119490469|ref|ZP_01622930.1| deoxyribodipyrimidine photolyase [Lyngbya sp. PCC 8106] gi|119453940|gb|EAW35095.1| deoxyribodipyrimidine photolyase [Lyngbya sp. PCC 8106] Length = 512 Score = 162 bits (411), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 141/476 (29%), Positives = 225/476 (47%), Gaps = 46/476 (9%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 + ++W R DLR+ DN + A +D +++ FI P ++Q I + F++ SL + Sbjct: 1 MQILWFRRDLRLIDND-IVAQAAATDEEILPCFIIDPWFYQQPDIGGMRVQFLFESLACL 59 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRV-TKLFYNRQYEINEVRRDKLLEKRL 127 SL G Y N + I+ L L+ +L +NR +++ R+ Sbjct: 60 DGSLRDLGSRL-YLFEGNSVEVIQTLTGELLELGYHPRLVFNRDIQVDYGRKRD------ 112 Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRS--LPVPAIRLT 185 H+VI F + L LN+ LQ+ + N ADLR P+P +L Sbjct: 113 -HQVI--EFYQRLGLNCYLGLNNFLQI----EGENREQWMNEYYADLRQPQHPIPT-KLK 164 Query: 186 GPVTPSNIPRF-FD-----YPFQAID-PMFPIGEQNALHILRKFCKEKVYYY---VEQRD 235 P P N+ + FD Y F + + +F GE A L + K + Y + + Sbjct: 165 TPEIPLNLTQLTFDELQQKYNFNSQNSALFTGGEVEAQKTLNSWLKSRYNGYHWKLSRPQ 224 Query: 236 IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKS--GAFSWLNELIWREFYRH 293 I + GTS LS +L+ G +S RQ + + K +L K+ S+ N L WR+ Sbjct: 225 IATLGGTSHLSAHLAFGTISTRQVYQQTKARANELKENAKAQFALKSFRNCLRWRDSAIQ 284 Query: 294 LMAFYPSVCMGKPFIPWTEKIEWNKDSHL-------LQAWKQGYTGFPIIDAAMRQLNTI 346 + ++P + + E +W D L QAW+QG TGFP++DA+M+QL ++ Sbjct: 285 RLYYFPELAYQNCY---PEFDKWYSDGELEGEKLEYFQAWQQGKTGFPLVDASMKQLQSM 341 Query: 347 GWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYF 406 GWM+ R+R + A+FL V W G ++M+ L+DGD+A N+ WQ A N F Sbjct: 342 GWMNFRMRAMCANFLTVICGVSWHHGARHYMNYLVDGDIAINHWQWQAQAGVTNPLSSTF 401 Query: 407 RIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVD 462 RI+NPT DP+ F+R W+PEL + + I + + +LS YP P++D Sbjct: 402 RIYNPTKNLTEKDPKFEFVRDWIPELRDCTDEQILSG----EIGELS-GYPEPMLD 452 >gi|290997872|ref|XP_002681505.1| predicted protein [Naegleria gruberi] gi|284095129|gb|EFC48761.1| predicted protein [Naegleria gruberi] Length = 528 Score = 162 bits (410), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 96/260 (36%), Positives = 144/260 (55%), Gaps = 14/260 (5%) Query: 208 FPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEF 267 F GE AL + + + K+ Y R+ +++LSP+L+ G +S R + +++ Sbjct: 226 FIGGEDKALKRCKFYIENKLKNYSTTRNGNIGDYSTKLSPWLANGCISSRYIYTEIQKNS 285 Query: 268 VDLLIKPKSGAFSWLNELIWREFYRHLM------AFYPSVCMGKPFIPWTEKIEWNK-DS 320 + K KS A ++EL+WR+FY++L FY + + ++ N+ + Sbjct: 286 NE---KSKSSANILVSELLWRDFYKYLAWKMGNSFFYEKALQPNKELDYEWEVPLNEYKN 342 Query: 321 HLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQL 380 Q W +G TG+P +DA MR+L G+M+NR RM+ ASFL+KD+ +DWR+G EYF QL Sbjct: 343 ERFQQWCKGKTGYPFVDACMRELLNTGFMNNRGRMVVASFLIKDMKIDWRMGAEYFERQL 402 Query: 381 LDG-DLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQY 439 LD D SN G W W+A G D P R FNP QG D G FI+ W+ EL +VP++ Sbjct: 403 LDSTDSCSNYGNWAWSAGIGCDFRP--RYFNPIKQGLDHDKNGEFIKIWIHELASVPSKS 460 Query: 440 IHAPHSWLDKNDLSLNYPLP 459 IH P+ LD+ D Y +P Sbjct: 461 IHLPYITLDE-DEKKRYKIP 479 >gi|195995819|ref|XP_002107778.1| hypothetical protein TRIADDRAFT_19715 [Trichoplax adhaerens] gi|190588554|gb|EDV28576.1| hypothetical protein TRIADDRAFT_19715 [Trichoplax adhaerens] Length = 384 Score = 162 bits (410), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 129/404 (31%), Positives = 191/404 (47%), Gaps = 45/404 (11%) Query: 4 TTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYA 63 ++ + LVWLR DLR+ DN AL+ A + +F R+ G + ++Y Sbjct: 2 SSKIPCTLVWLRRDLRLIDNPALFHAAKRGQLITVYIFDEDCSGRRKTGQACLW--WLYH 59 Query: 64 SLLQVQKSLSQKGIVFQYHQCSN-FDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKL 122 SL + LSQ I ++ F E LDSY +++NR YE E RD Sbjct: 60 SLKSLHNQLSQWNIPLIMKSGNDAFTILKELLDSY----NADTIYWNRCYEPFEYNRDCS 115 Query: 123 LEKRLQ-HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPA 181 +E++L+ V +++ D VL P +I ++Y F + SLP P Sbjct: 116 IEEKLKMENVTVETYQDRVLFEPWTIKTAKGGPVQIYIHFWNQCL---------SLPQPR 166 Query: 182 I--------RLTGPVTPSNIPRFF--------DYPFQAIDPMFPIGEQNALHILRKFCKE 225 TG + + P + D P + D P GE+ A+ L+ F K Sbjct: 167 KPYDKPKFKNQTGCQSKCDEPAVWQRLAKLSQDMPMKLQDFWHP-GEEQAISKLKSFIKN 225 Query: 226 KVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDL---LIKPKSGAFSWL 282 + Y E+ + TS LSPYL G +SP W+ ++ +K +S +L Sbjct: 226 SLNAYAEKSQCLRLNTTSNLSPYLHFGEISPFTVWHSVRHASSSAEPPAVKSESLK-QYL 284 Query: 283 NELIWREFYRHLMAFYPSV---CMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAA 339 L WRE+ HL+ YP + C F E+++ D LQ+W+QG TG+P++DA Sbjct: 285 RSLGWREYTCHLLFHYPDLPQKCFRSSF----EQLKLQVDPVKLQSWQQGNTGYPVVDAG 340 Query: 340 MRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDG 383 MRQL+ G M NRLRMI ASFL+K LLV W+ GEE+F S+L+D Sbjct: 341 MRQLSVAGIMPNRLRMIVASFLIKHLLVPWQKGEEWFWSKLIDA 384 >gi|254373814|ref|ZP_04989297.1| hypothetical protein FTDG_01598 [Francisella novicida GA99-3548] gi|151571535|gb|EDN37189.1| hypothetical protein FTDG_01598 [Francisella novicida GA99-3548] Length = 499 Score = 162 bits (409), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 133/485 (27%), Positives = 223/485 (45%), Gaps = 35/485 (7%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 + +VW + DLR+TDN AL A D ++ ++I PE W+Q +S RQ F+ L ++ Sbjct: 1 MQIVWFKRDLRVTDNLALSLAAERGD--ILPLYIIEPELWQQPDMSHRQYLFLSECLEEL 58 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEIN-EVRRDKLLEKRL 127 L++ G D++E + + + ++ N++ N +RD LEK Sbjct: 59 NTELTKLGQSLTIM----LGDAVEIFEQLIQKYPIKNVWSNQETWNNWTYQRDIKLEKFF 114 Query: 128 QHRVIC--KSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185 + I + + + V+ AL + + + + +++A + + ++ Sbjct: 115 KQNNIAWHQPYQNGVVRCLADRDKWAL-------LWHQRMSEKIIRAPTKLKFICENQIK 167 Query: 186 GPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIP--AIQGTS 243 P T ++ +D ++ G AL IL F ++ Y ++ P A + S Sbjct: 168 IP-TAESLGLEYDNCYKRQKG----GRIRALRILDSFLYQRGCSYTKEMSSPVTAFKSCS 222 Query: 244 QLSPYLSIGVLSPRQCW-------NRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMA 296 +LSPY++ GV+S ++ + N +KE V K S S+L+ L W + + Sbjct: 223 RLSPYIAFGVISLKEIYQKATQRKNEIKESRVKNKTKWLSAMRSFLSRLCWHCHFMQKLE 282 Query: 297 FYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMI 356 PS+ + + + +AWK G TG+P+IDA MR L GW++ R+R + Sbjct: 283 DQPSIEYENLHSAYDQLRTEPLNQQCFEAWKTGNTGYPMIDACMRALIATGWLNFRMRAM 342 Query: 357 TASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGK 416 SF L +DWR+ Y D + + Q +G + RI+NP Q Sbjct: 343 LMSFASYHLWLDWRVTSLYLARLFTDYEPGIHYS--QVQMQSGTTGINSIRIYNPIKQSI 400 Query: 417 RFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYA 476 DP G FIR WLPEL NV + IH P WL+K++ SL+YP PI+D K+A + Y Sbjct: 401 DQDPNGEFIRRWLPELENVSNENIHTP--WLEKHN-SLDYPDPIIDEKQARKFAADNIYK 457 Query: 477 AKKQS 481 +K S Sbjct: 458 IRKSS 462 >gi|166007599|gb|ABY77633.1| At1g04400-like protein [Arabidopsis lyrata] Length = 450 Score = 161 bits (408), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 103/277 (37%), Positives = 147/277 (53%), Gaps = 41/277 (14%) Query: 211 GEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPR---QC-------W 260 G NA IL +F ++++ Y + TS LSPYL G +S R QC W Sbjct: 51 GWSNADKILNEFIEKQLIDYAKNSKKVVGNSTSLLSPYLHFGEISVRHVFQCARMKQIIW 110 Query: 261 NRLK----EEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYP-----SVCMGKPFIPWT 311 R K EE DL ++ + RE+ R++ +P S+ F PW Sbjct: 111 ARDKNSEGEESADLFLRG----------IGLREYSRYICFNFPFTHEQSLLSHLRFFPW- 159 Query: 312 EKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRI 371 + D +AW+QG TG+P++DA MR+L GWMHNR+R+I +SF VK LL+ W+ Sbjct: 160 -----DADVDKFKAWRQGRTGYPLVDAGMRELWATGWMHNRIRVIVSSFAVKFLLLPWKW 214 Query: 372 GEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPE 431 G +YF LLD DL + GWQ+ + + D R+ NP +QG ++DP+G +IR WLPE Sbjct: 215 GMKYFWDTLLDADLECDILGWQYISGSIPDGHELDRLDNPALQGAKYDPEGEYIRQWLPE 274 Query: 432 LNNVPTQYIH----APHSWLDKN--DLSLNYPLPIVD 462 L +PT++IH AP + L + +L NY PIVD Sbjct: 275 LARLPTEWIHHPWDAPLTVLKASGVELGTNYAKPIVD 311 >gi|318078311|ref|ZP_07985643.1| deoxyribodipyrimidine photo-lyase [Streptomyces sp. SA3_actF] Length = 487 Score = 161 bits (408), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 117/408 (28%), Positives = 193/408 (47%), Gaps = 33/408 (8%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M +V +DLR+ D+ L AA ++ +V+ +F+ P + +A ++ F+ L Sbjct: 1 MKASIVLYTSDLRLHDHPPLRAAVREAE-EVVPLFVRDPGIKKVGFHAANRAAFLADCLG 59 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRR-----DK 121 + L ++G + + + L +RV Y N R + Sbjct: 60 DLDAGLRERGGRLVV-RAGDPAQVVRELVGSTGAERVHVAAGVSAYARNRADRLRAALEG 118 Query: 122 LLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPF-RKALIQNLVQ--ADLRSLP 178 + ++H + + LPPG ++ + + V+TP+ R+ Q+L + R L Sbjct: 119 TGAELVEHEAVITA------LPPGEVVPGSKDHFAVFTPYHRQWSAQHLREPLGAPRKLS 172 Query: 179 VPAIRLTGPVTPSNIPRFFDYPFQAIDPMFP-IGEQNALHILRKFCKEKVYYYVEQRDIP 237 VP+ V +PR D + I P GE+ L + ++ + Y + D Sbjct: 173 VPS-----KVRSDGVPRRED--VEGISPGLARGGEREGRAKLASWRRDGISRYEDLHDDL 225 Query: 238 AIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAF 297 A GTS+LSPYL G LS +C +R + ++ +L WR+F+ ++A Sbjct: 226 AGDGTSRLSPYLHFGALSAAECVHRARAAGGAGADA-------FVRQLCWRDFHHQVLAA 278 Query: 298 YPSVCMGKPFIPWTEKIEWNKDS-HLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMI 356 P+ + + P + D+ H AW++G TG+P++DAAMRQL GWMHNR R++ Sbjct: 279 RPAAAH-EDYRPRGDHWRTGSDAEHEAAAWREGRTGYPVVDAAMRQLAHEGWMHNRGRLL 337 Query: 357 TASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVP 404 ASFL K L +DWR+G +F+ L+DGDL +N WQW A TG D+ P Sbjct: 338 AASFLTKTLYLDWRLGAAHFLDLLVDGDLVNNQMNWQWVAGTGTDTRP 385 >gi|327342148|gb|AEA50861.1| cry1-2 [Populus tremula] Length = 576 Score = 161 bits (408), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 116/371 (31%), Positives = 174/371 (46%), Gaps = 38/371 (10%) Query: 117 VRRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRS 176 VR + E + +SF+ +L P + + + + + F + + Sbjct: 5 VRDHRAKEVLTAQGIAVRSFNADLLYEPWDVNDAQGRPFTTFATFWDRCLSMPFDPEAPL 64 Query: 177 LPVPAIRLTGPVT--PSNIPRFFDYPFQAIDPMFP----IGEQNALHILRKFCKEKVYYY 230 LP P ++G + PS + F D + + + G NA L F + Y Sbjct: 65 LP-PKRIISGDASRCPSEMLVFEDESEKGSNALLARAWSPGWSNADRALTTFINGPLIEY 123 Query: 231 VEQRDIPAIQGTSQLSPYLSIGVLSPRQCW--------------NRLKEEFVDLLIKPKS 276 + R TS LSP+L G +S R+ + N+ EE V+L +K Sbjct: 124 SKNRRKADSATTSFLSPHLHFGEVSVRKVFHLVRIKQVLWANEGNKAGEESVNLFLK--- 180 Query: 277 GAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPII 336 + RE+ R+L +P +P + + W D +AW+QG TG+P++ Sbjct: 181 -------SIGLREYSRYLSFNHP-YSHERPLLGHLKFFPWVVDEGYFKAWRQGRTGYPLV 232 Query: 337 DAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAA 396 DA MR+L GW+H+R+R++ ASF VK L + WR G +YF LLD DL S+ GWQ+ Sbjct: 233 DAGMRELWATGWLHDRIRVVVASFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYIT 292 Query: 397 STGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIH----APHSWLDKNDL 452 T D + RI NP +G +FDP G ++R WLPEL +PT +IH AP S L + Sbjct: 293 GTLPDGREFDRIDNPQFEGYKFDPNGEYVRRWLPELARLPTDWIHHPWNAPESVLQAAGI 352 Query: 453 SL--NYPLPIV 461 L NYPLPIV Sbjct: 353 ELGSNYPLPIV 363 >gi|328676445|gb|AEB27315.1| Deoxyribodipyrimidine photolyase [Francisella cf. novicida Fx1] Length = 499 Score = 161 bits (408), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 136/486 (27%), Positives = 225/486 (46%), Gaps = 37/486 (7%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 + +VW + DLR+TDN AL A D ++ ++I PE W+Q +S RQ F+ L ++ Sbjct: 1 MQIVWFKRDLRVTDNLALSLAAEKGD--ILPLYIIEPELWQQPDMSHRQYLFLSECLEEL 58 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINE--VRRDKLLEKR 126 L++ G D++E + +Q+ K ++ Q N+ +RD LEK Sbjct: 59 NTELTKLGQSLAIM----LGDAVEIFEQ-LIQKYNIKNVWSHQETWNDWTYQRDIKLEKF 113 Query: 127 LQHRVIC--KSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL 184 + I + + + V+ N AL + + + + +++A + + ++ Sbjct: 114 FKQNNIVWHQPYQNGVVRCLADRDNWAL-------LWHQRMSEKIIRAPTKLKFICENQI 166 Query: 185 TGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIP--AIQGT 242 P T ++ +D ++ G AL IL F ++ Y ++ P A + Sbjct: 167 KIP-TAESLGLEYDNCYKRQKG----GRIRALRILDSFLYQRGCGYTKEMSSPVTAFKSC 221 Query: 243 SQLSPYLSIGVLSPRQCW-------NRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLM 295 S+LSPY++ GV+S ++ + N +KE V K S S+L+ L W + + Sbjct: 222 SRLSPYIAFGVISLKEIYQKANQRKNEIKESSVKNKTKWLSAMRSFLSRLRWHCHFMQKL 281 Query: 296 AFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRM 355 PS+ + + + +AWK G TG+P+IDA MR L GW++ R+R Sbjct: 282 EDQPSIEYENLHSAYDQLRTEPLNQQCFEAWKTGNTGYPMIDACMRALIATGWLNFRMRA 341 Query: 356 ITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQG 415 + SF L +DWR+ Y D + + Q +G + RI+NP Q Sbjct: 342 MLMSFASYHLWLDWRVTSLYLARLFTDYEPGIHY--LQVQMQSGTTGINSIRIYNPIKQS 399 Query: 416 KRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYY 475 DP G FIR WLPEL NV + IH P WL+K++ SL+YP PI+D K+A + Y Sbjct: 400 IDQDPNGEFIRRWLPELENVSNENIHTP--WLEKHN-SLDYPDPIIDEKQARKFAADNIY 456 Query: 476 AAKKQS 481 +K S Sbjct: 457 KIRKSS 462 >gi|312889794|ref|ZP_07749340.1| deoxyribodipyrimidine photo-lyase (single-stranded DNA-specific) [Mucilaginibacter paludis DSM 18603] gi|311297720|gb|EFQ74843.1| deoxyribodipyrimidine photo-lyase (single-stranded DNA-specific) [Mucilaginibacter paludis DSM 18603] Length = 493 Score = 161 bits (407), Expect = 3e-37, Method: Compositional matrix adjust. Identities = 135/483 (27%), Positives = 216/483 (44%), Gaps = 50/483 (10%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQS-----HFIYASL 65 LVW RNDLRI DN+ L A +D KV+ VF ++ R++ F+ ++ Sbjct: 15 LVWFRNDLRIHDNEILVEALRKAD-KVLPVFCFDNFYFKITRYGTRKTGDFRTRFLLEAV 73 Query: 66 LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125 ++K+L Q G D ++ + + V++++++R+ E +E Sbjct: 74 ADLRKTLQQHGAELIVRSG----DPVDIIPQLAEEYHVSEVYHHREVAFEETDISAKVEA 129 Query: 126 RL-QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL 184 L + ++ K F + + V+T FRK + ++ + +R P Sbjct: 130 VLWKKKLNLKHFIGHTFYHKEDLPFPIKDIPDVFTTFRKKVERD---SSIR----PCFET 182 Query: 185 TGPVT------PSNIPRF----FDYPFQAIDPM--FPIGEQNALHILRKFCKEK---VYY 229 G ++ P IP FD P + F GE AL L ++ E Y Sbjct: 183 PGNISIPPIDHPGEIPTLQQLGFDEPVDDSRAVLHFKGGETEALKRLHEYFWESDCLKTY 242 Query: 230 YVEQRDIPAIQGTSQLSPYLSIGVLSPRQCW---NRLKEEFVDLLIKPKSGAFSWL-NEL 285 + + +S+ SP+LS+G LS RQ + R ++E + + + WL EL Sbjct: 243 KTTRNGLLGADYSSKFSPWLSVGCLSVRQVYWEVKRYEQE------RGANDSTYWLIFEL 296 Query: 286 IWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNT 345 +WR+++R + Y + + L + WK G TG P IDA MR+LN Sbjct: 297 LWRDYFRFMFKKYGNQFFKAGGFKGQAPEVVPHEDELFEKWKAGETGVPFIDANMRELNA 356 Query: 346 IGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPY 405 G+M NR R ASFLVKDL V+W G YF +L+D ASN G W + A GND Sbjct: 357 TGFMSNRGRQNVASFLVKDLKVNWTKGAAYFEEKLIDYSPASNWGNWAYVAGVGNDPREN 416 Query: 406 FRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLD------KNDLSLNYPLP 459 R N Q +DP+G +++ W+PEL +P + + P + K +L +NYP Sbjct: 417 -RHLNVIKQAIEYDPKGEYVKTWIPELTMIPAKLVQTPFFLTEADLKLYKVELGVNYPKL 475 Query: 460 IVD 462 I++ Sbjct: 476 IIN 478 >gi|326513908|dbj|BAJ92104.1| predicted protein [Hordeum vulgare subsp. vulgare] Length = 546 Score = 161 bits (407), Expect = 3e-37, Method: Compositional matrix adjust. Identities = 149/509 (29%), Positives = 227/509 (44%), Gaps = 56/509 (11%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFI----------ATPEQWRQHGISARQSHF 60 LVW R LR+ DN AL AA S A+V VF+ A P H AR F Sbjct: 16 LVWFRKGLRVHDNPALDAA-RRSAARVYPVFVLDPRYLRPDPAAPSPGSAHAGVAR-VRF 73 Query: 61 IYASLLQVQ---KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEV 117 + SLL + + L + +V + DD + + + + KL + E + Sbjct: 74 LLESLLDLDARLRCLGSRLLVLRAR-----DDVSDAVCAALKDWNIGKLCFESDTEPYAL 128 Query: 118 RRDK-LLEKRLQHRVICKSFDDSVLLPPGSILN-HALQMYKVYTPFRKALIQNLVQADLR 175 RDK + + + S L P I+ + + Y F + Sbjct: 129 ARDKRVTDFAAASGIEVFSPVSHTLFDPAEIIEKNGGRPPLTYQSFVATAGEPPKPVMEE 188 Query: 176 SLPVPAIRLTGPVTPSNIPRFFDYPF----QAIDPMFPIGEQNALHILRKFCKEK--VYY 229 +P I TG +P+ + + Q P F GE AL +R+ ++K V Sbjct: 189 YSVLPPIGDTGGYELLPVPKLEELGYGDLSQEYIPPFRGGETEALKRMRESLQDKEWVAK 248 Query: 230 YVEQRDIPAI---QGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELI 286 + + + P+ T+ LSPYL G LS R ++ +++ + K S +L+ Sbjct: 249 FEKPKGDPSAFVKPATTVLSPYLKFGCLSVRYFYHCIQDVYRSAKTHTKP-PVSLAGQLL 307 Query: 287 WREFYRHLMAFYPSVCMGKPFI------PWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAM 340 WR+F FY +V +G P P ++I W + L AW+ G TG+P IDA M Sbjct: 308 WRDF------FY-TVSLGTPNFDHMEGNPICKQIPWRESEELFVAWRDGRTGYPWIDAIM 360 Query: 341 RQLNTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTG 399 QL GWMH+ R A FL + DL + W G + F L+D D A NNG W W S Sbjct: 361 IQLRKWGWMHHLARHSVACFLTRGDLYIHWEQGRDVFERLLIDSDWAINNGNWLW-LSCS 419 Query: 400 NDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIH----APHSWLDKND--LS 453 + Y RI++P GK++DP G +IRH++P L ++P +YI+ AP S +K + Sbjct: 420 SFFYQYHRIYSPISFGKKYDPNGDYIRHFIPVLKDMPKEYIYEPWTAPLSVQEKARCIVG 479 Query: 454 LNYPLPIVDHK---KACHHTLNQYYAAKK 479 +YP P+VDH+ K C + + YA+ + Sbjct: 480 KDYPKPVVDHEAASKGCRRRMGEAYASNR 508 >gi|76802366|ref|YP_327374.1| deoxyribodipyrimidine photolyase [Natronomonas pharaonis DSM 2160] gi|97047786|sp|Q3IPX9|CRYD_NATPD RecName: Full=Cryptochrome DASH gi|76558231|emb|CAI49819.1| deoxyribodipyrimidine photolyase [Natronomonas pharaonis DSM 2160] Length = 474 Score = 161 bits (407), Expect = 3e-37, Method: Compositional matrix adjust. Identities = 137/489 (28%), Positives = 210/489 (42%), Gaps = 56/489 (11%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQW--RQHGISARQSH---FI 61 M +VW R+DLR+TDN L A ++ VI V+ P+++ ++G H F Sbjct: 1 MDTAVVWFRDDLRVTDNPTLADAVAAAET-VIPVYTFDPDRYTESEYGPPKTGGHRAVFR 59 Query: 62 YASLLQVQKSLSQKG------------IVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYN 109 ++ ++ SL +G +V + Q + D+ Q + Sbjct: 60 RQAVADLRASLRDRGGDLLVRSGRPATVVPELAQRAG-------ADAVYAQTKPATEERR 112 Query: 110 RQYEINEVRRDK--LLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQ 167 R ++ D L +R H + D + PP I + +TP+RK Sbjct: 113 RAADVASALDDAGIALRQRWTHTLYHP---DDLPTPPTDIDD-------TFTPWRKETEA 162 Query: 168 NLVQADLRS----LPVPAIRLTGPVTPSNIPRFFDYPFQAIDPM-FPIGEQNALHILRKF 222 D RS +P P GPV + P + F GE + + Sbjct: 163 AATVRDPRSAPETVPTPDGLTPGPVPTVESLGVSEPPTDDRAVLEFEGGESAGKRRVESY 222 Query: 223 CKEKVY---YYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAF 279 E + Y + + +S+ SP+L+ G LSPR +R E + D + + Sbjct: 223 IWEGDHLREYKTTRNGLLGADYSSKFSPWLAAGCLSPRWL-HREVERYEDERVA-NEDTY 280 Query: 280 SWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAA 339 + EL WR+F++ Y + KP I+W++D L + W G TG P +DA Sbjct: 281 WLVFELAWRDFFQFQFEKYGATFF-KPGGIRERNIDWDRDRALFERWADGETGVPFVDAN 339 Query: 340 MRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTG 399 MR+LN G+M NR R ASFL L +DWR G YF ++L+D D+ASN G W + A G Sbjct: 340 MRELNRTGYMSNRGRQNVASFLAGVLGIDWRWGAAYFEARLIDYDVASNWGNWAYQAGVG 399 Query: 400 NDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKN------DLS 453 NDS R F+ Q +R+D +I WLPEL +P H P + +L Sbjct: 400 NDSRD--RYFDVRSQAERYDSDAEYITTWLPELAALPATIAHQPWQLSEAEQREYGVELG 457 Query: 454 LNYPLPIVD 462 ++YP P+VD Sbjct: 458 VDYPEPVVD 466 >gi|254372340|ref|ZP_04987831.1| deoxyribodipyrimidine photolyase [Francisella tularensis subsp. novicida GA99-3549] gi|151570069|gb|EDN35723.1| deoxyribodipyrimidine photolyase [Francisella novicida GA99-3549] Length = 499 Score = 160 bits (406), Expect = 3e-37, Method: Compositional matrix adjust. Identities = 132/485 (27%), Positives = 224/485 (46%), Gaps = 35/485 (7%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 + +VW + DLR+TDN AL A D ++ ++I PE W+Q +S RQ F+ L ++ Sbjct: 1 MQIVWFKRDLRVTDNLALSLAAEKGD--ILPLYIIEPELWQQPDMSHRQYLFLSECLEEL 58 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEIN-EVRRDKLLEKRL 127 L++ G D++E + + + ++ +++ N +RD LEK Sbjct: 59 NTELTKLGQSLAIM----LGDAVEIFEQLIQKYNIKNVWSHQETWNNWTYQRDIKLEKFF 114 Query: 128 QHRVIC--KSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185 + I + + + V+ AL + + + + +++A + + ++ Sbjct: 115 KQNNIVWHQPYQNGVVRCLADRDKWAL-------LWHQRMSEKIIRAPTKLKFICENQIK 167 Query: 186 GPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIP--AIQGTS 243 P T ++ +D ++ G AL IL F ++ Y ++ P A + S Sbjct: 168 IP-TAESLGLEYDNCYKRQKG----GRIRALRILDSFLYQRGCGYTKEMSSPVTAFKSCS 222 Query: 244 QLSPYLSIGVLSPRQCW-------NRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMA 296 +LSPY++ GV+S ++ + N +KE V K S S+L+ L W + + Sbjct: 223 RLSPYIAFGVISLKEIYQKANQRKNEIKESRVKNKTKWLSAMRSFLSRLRWHCHFMQKLE 282 Query: 297 FYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMI 356 PS+ + + + +AWK G TG+P+IDA MR L GW++ R+R + Sbjct: 283 DQPSIEYENLHSAYDQLRTEQLNQQCFEAWKTGNTGYPMIDACMRALIATGWLNFRMRAM 342 Query: 357 TASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGK 416 SF L +DWR+ Y D + + Q +G + RI+NP Q Sbjct: 343 LMSFASYHLWLDWRVTSLYLARLFTDYEPGIHYS--QVQMQSGTTGINSIRIYNPIKQSI 400 Query: 417 RFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYA 476 DP G FIR WLPEL NV ++ IH P WL+K++ SL+YP PI+D K+A + Y Sbjct: 401 DQDPNGEFIRRWLPELENVSSENIHTP--WLEKHN-SLDYPDPIIDEKQARKFAADNIYK 457 Query: 477 AKKQS 481 +K S Sbjct: 458 IRKSS 462 >gi|163754253|ref|ZP_02161376.1| deoxyribodipyrimidine photolyase (photoreactivation) [Kordia algicida OT-1] gi|161326467|gb|EDP97793.1| deoxyribodipyrimidine photolyase (photoreactivation) [Kordia algicida OT-1] Length = 432 Score = 160 bits (406), Expect = 3e-37, Method: Compositional matrix adjust. Identities = 129/435 (29%), Positives = 208/435 (47%), Gaps = 29/435 (6%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQH-----GISARQSHFIYASL 65 LVW RNDLRI D +L A ++ V+AV+ P + + ++ F+ ++ Sbjct: 6 LVWFRNDLRIHDQVSLVKAA-KENSFVMAVYCFDPRHFEKDRFGFVKTGKYRAQFLIETV 64 Query: 66 LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125 +Q L++ I H F+ + + Y +VT ++ +++ EV ++K Sbjct: 65 SDLQNQLNELNIPLFVH----FEKPEKVVSEYVKIHKVTSVYSQKEWTSEEVAVSSAVKK 120 Query: 126 RLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLP-VPAIRL 184 L + V D L P I ++ +V+T FRK + A +R L + + Sbjct: 121 ALSNEVNWVESYDQFLFHPEDIPMTIDKIPQVFTVFRKKCEK---YAQIRELETISKMPE 177 Query: 185 TGPVTP-SNIPRFFDYPFQAID----PMFPI--GEQNALHILRKFC--KEKVYYYVEQRD 235 VT + +P D A + FP GE AL L+ + +K+ YY + R+ Sbjct: 178 KNRVTHLTKVPTLHDLGLPAFEQDTRTAFPFKGGETAALQRLQDYAWNTKKLSYYKKTRN 237 Query: 236 -IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHL 294 + +S+ S +L+ G LSPR ++ +K+ + +IK +S + + ELIWR+F++++ Sbjct: 238 GLVGTAYSSKFSAWLANGSLSPRMIYHEVKK-YESEIIKNQS-TYWMIFELIWRDFFKYI 295 Query: 295 MAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLR 354 + + I + EWN DS L+Q W G T P ++A M +L GWM NR R Sbjct: 296 SLKHGNNIFKLEGIL-HKAYEWNTDSKLIQQWIDGETAAPFVNANMLELKHTGWMSNRGR 354 Query: 355 MITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQ 414 AS+ K L +DWRIG YF S L+D D+ SN G W + + GND P R FN +Q Sbjct: 355 QNVASYFAKTLELDWRIGAAYFESLLIDYDVHSNYGNWLYVSGVGND--PRNRTFNVKLQ 412 Query: 415 GKRFDPQGTFIRHWL 429 +R+D F WL Sbjct: 413 AERYDANKKFQNLWL 427 >gi|145346348|ref|XP_001417651.1| predicted protein [Ostreococcus lucimarinus CCE9901] gi|144577879|gb|ABO95944.1| predicted protein [Ostreococcus lucimarinus CCE9901] Length = 562 Score = 160 bits (406), Expect = 3e-37, Method: Compositional matrix adjust. Identities = 98/263 (37%), Positives = 133/263 (50%), Gaps = 22/263 (8%) Query: 235 DIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIK--PKSGAFSWLNELIWREFYR 292 D+ T+ LSPY+ G +SPR ++ L K P S + +L+WREFY Sbjct: 294 DMLMTPSTTALSPYMKFGCVSPRVFYHELNAVLAKFEGKGQPSQPPVSLMGQLMWREFYY 353 Query: 293 HLMAFYPSV--CMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMH 350 + A P+ G P +I WNKD L AW+ TGFP IDAAM QL GW+H Sbjct: 354 LVGAGTPNFDKMEGNPIC---RQIPWNKDRELFAAWENAQTGFPWIDAAMTQLRLEGWIH 410 Query: 351 NRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIF 409 + R A FL + DL V W G + F L+D D A NNG W W S YFR++ Sbjct: 411 HLARHAVACFLTRGDLFVHWEWGRDTFDRDLVDADWALNNGNWMW-LSCSCFFYQYFRVY 469 Query: 410 NPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND--------LSLNYPLPIV 461 P K++D G +++H+LP L N+P +Y++ P WL D + ++YP PIV Sbjct: 470 GPHSFAKKYDKDGAYVKHYLPVLKNMPAKYVYEP--WLAPLDVQKKAGCVVGVDYPAPIV 527 Query: 462 DH---KKACHHTLNQYYAAKKQS 481 DH KAC + YAA K + Sbjct: 528 DHATASKACIDKIATAYAAHKDA 550 >gi|297812689|ref|XP_002874228.1| predicted protein [Arabidopsis lyrata subsp. lyrata] gi|297320065|gb|EFH50487.1| predicted protein [Arabidopsis lyrata subsp. lyrata] Length = 566 Score = 160 bits (406), Expect = 4e-37, Method: Compositional matrix adjust. Identities = 128/468 (27%), Positives = 221/468 (47%), Gaps = 51/468 (10%) Query: 5 TAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQH------GISARQS 58 + ++W RNDLR+ DN ALY A +SD ++ V+ P + A + Sbjct: 80 NGKGITILWFRNDLRVLDNDALYKAWSSSDT-LLPVYCLDPRLFHTTHFFNFPKTGALRG 138 Query: 59 HFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVR 118 F+ L+ ++K+L ++G+ E L S +F +++ E+ Sbjct: 139 GFLMECLVDLRKNLMKRGLNLLIRSGK----PEEILPSLAKDFGAHTVFAHKETCSEELH 194 Query: 119 RDKLLEKRLQHRVICKSFDDSVLLPPGSILNH-------ALQMYKVYTPFRKAL-----I 166 ++L+ + L+ + L GS + H + VYT FRK++ I Sbjct: 195 VERLVNQGLKGVGNGTKLE----LIWGSTMYHKDDLPFDVFDLPDVYTQFRKSVEAKCSI 250 Query: 167 QNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNAL--HILRKFCK 224 ++ + L P+P++ G V + + P + M +G ++A + F K Sbjct: 251 RSSTRIPLSLGPIPSVDDWGDV--PTLEQLGIEPQEVTRGMRFVGGESAGVGRVFEYFWK 308 Query: 225 EKV--YYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWN---RLKEEFVDLLIKPKSGAF 279 + + Y + + +++ SP+L+ G +SPR + R ++E V + + Sbjct: 309 KDLLKVYKDTRNGMLGPDYSTKFSPWLAFGCISPRFIYEEVQRYEKERV-----ANNSTY 363 Query: 280 SWLNELIWREFYRHLMAFYPSVCMGKPFI----PWTEKIEWNKDSHLLQAWKQGYTGFPI 335 L ELIWR+++R L S+ G P + +W++D L ++W+ G TG+P+ Sbjct: 364 WVLFELIWRDYFRFL-----SIKCGNSLFHLGGPRNVQGKWSQDQKLFESWRDGKTGYPL 418 Query: 336 IDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWA 395 IDA M++L T G+M NR R I SFLV+D+ +DWR+G E+F + LLD D SN G W + Sbjct: 419 IDANMKELYTTGFMSNRGRQIVCSFLVRDMGLDWRMGAEWFETCLLDYDPCSNYGNWTYG 478 Query: 396 ASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAP 443 A GND R F+ Q + +DP+G ++ WL +L +P + H P Sbjct: 479 AGVGNDPRED-RYFSIPKQAQNYDPEGEYVAFWLQQLRRLPKEKRHWP 525 >gi|56707953|ref|YP_169849.1| deoxyribodipyrimidine photolyase [Francisella tularensis subsp. tularensis SCHU S4] gi|110670424|ref|YP_666981.1| deoxyribodipyrimidine photolyase [Francisella tularensis subsp. tularensis FSC198] gi|224457035|ref|ZP_03665508.1| deoxyribodipyrimidine photolyase [Francisella tularensis subsp. tularensis MA00-2987] gi|254370442|ref|ZP_04986447.1| hypothetical protein [Francisella tularensis subsp. tularensis FSC033] gi|254874757|ref|ZP_05247467.1| deoxyribodipyrimidine photolyase [Francisella tularensis subsp. tularensis MA00-2987] gi|56604445|emb|CAG45479.1| deoxyribodipyrimidine photolyase [Francisella tularensis subsp. tularensis SCHU S4] gi|110320757|emb|CAL08862.1| deoxyribodipyrimidine photolyase [Francisella tularensis subsp. tularensis FSC198] gi|151568685|gb|EDN34339.1| hypothetical protein FTBG_00211 [Francisella tularensis subsp. tularensis FSC033] gi|254840756|gb|EET19192.1| deoxyribodipyrimidine photolyase [Francisella tularensis subsp. tularensis MA00-2987] gi|282159139|gb|ADA78530.1| deoxyribodipyrimidine photolyase [Francisella tularensis subsp. tularensis NE061598] Length = 499 Score = 160 bits (404), Expect = 5e-37, Method: Compositional matrix adjust. Identities = 137/487 (28%), Positives = 222/487 (45%), Gaps = 39/487 (8%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 + +VW + DLR+TDN AL A D ++ ++I PE W+Q +S RQ F+ L ++ Sbjct: 1 MQIVWFKRDLRVTDNLALSLASEKGD--ILPLYIIEPELWQQPDMSHRQYLFLSECLEEL 58 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINE--VRRDKLLEKR 126 L++ G D++E + +Q+ K ++ Q N+ +RD LEK Sbjct: 59 NTELTKLGQSLAIM----LGDAVEIFEQ-LIQKYNIKNVWSHQETWNDWTYQRDIKLEKF 113 Query: 127 LQHRVIC--KSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL 184 + I + + + V+ N AL + + + + +++A + + ++ Sbjct: 114 FKQNNIVWHQPYQNGVVRCLADRDNWAL-------LWHQHMSEKIIRAPTKLKFICENQI 166 Query: 185 TGPVTPSNIPRFFD-YPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIP--AIQG 241 P S + D Y Q G AL IL F ++ Y ++ P A + Sbjct: 167 KIPTAESLGLEYDDCYKRQKG------GRIRALRILDSFLYQRGCGYTKEMSSPVTAFKS 220 Query: 242 TSQLSPYLSIGVLSPRQCW-------NRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHL 294 S+LSPY++ GV+S ++ + N +KE V K S S+L+ L W + Sbjct: 221 CSRLSPYIAFGVISLKEIYQKANQRKNEIKESSVKNKTKWLSAMRSFLSRLRWHCHFMQK 280 Query: 295 MAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLR 354 + PS+ + + + +AWK G TG+P+IDA MR L GW++ R+R Sbjct: 281 LEDQPSIEYENLHSAYDQLRTEPLNQQCFEAWKTGNTGYPMIDACMRALIATGWLNFRMR 340 Query: 355 MITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQ 414 + SF L +DWR+ Y D + + Q +G + RI+NP Q Sbjct: 341 AMLMSFASYHLWLDWRVTSLYLARLFTDYEPGIHYS--QVQMQSGTTGINSIRIYNPIKQ 398 Query: 415 GKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQY 474 DP G FIR WLPEL NV + IH P WL+K++ SL+YP P +D K+A + Sbjct: 399 SIDQDPNGEFIRRWLPELENVSNENIHTP--WLEKHN-SLDYPDPTIDEKQARKFAADNI 455 Query: 475 YAAKKQS 481 Y +K S Sbjct: 456 YKIRKSS 462 >gi|224002945|ref|XP_002291144.1| Cryptochrome/Photolyase family 1 [Thalassiosira pseudonana CCMP1335] gi|220972920|gb|EED91251.1| Cryptochrome/Photolyase family 1 [Thalassiosira pseudonana CCMP1335] Length = 556 Score = 160 bits (404), Expect = 5e-37, Method: Compositional matrix adjust. Identities = 151/508 (29%), Positives = 221/508 (43%), Gaps = 71/508 (13%) Query: 9 VHLVWLRNDLRITDNKALY---AACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASL 65 V + W R LR+ DN AL A ++ + V+I P ++ S ++ F+ + Sbjct: 14 VAMHWFRKGLRVHDNPALLHALAITKDTSGPIYPVYIVDPNCYQLLKCSVLRARFLLECI 73 Query: 66 LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFY--NRQYEINEVRRDKLL 123 + KSL ++G D +E L + VT + + + E V RD+ + Sbjct: 74 SDLDKSLRERGSRLYVAT----GDPLEVLPELWKEWGVTHVTHEADETGEPYAVARDEGV 129 Query: 124 EK-RLQHRVICKSFDDSVL-----LPPGSILNHALQMYKVYTPFRKALIQNLV-QADLRS 176 ++ V F L +P G + N + V P + Q L+ + D + Sbjct: 130 RSVAKKNGVQVMEFRSETLRPLGNVPGGYVANVGGAVNSV--PSTMSSFQGLLGRIDGGN 187 Query: 177 LPVPAIRLTGPVTPSNIPRFFD-----------YPFQAIDP----MFPIGEQNALHILRK 221 +P+P L P T P+ D +P D + GE AL L+ Sbjct: 188 IPLP---LDAP-TKEEFPQLSDDDDSNKYLPLEHPSDCEDASLTGIVKGGETLALAQLQS 243 Query: 222 FCK---------EKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCW------NRLKEE 266 EK + P+ T+ LSPYLS+G LSPR+ W NR Sbjct: 244 TVTARPDWTASFEKPKTSCTEVSTPS---TTVLSPYLSLGCLSPRKAWHAVADANRKASS 300 Query: 267 FVDLLIKPKSGAFSWLNELIWREFYRHLM----AFYPSVCMGKPFIPWTEKIEWNKDSHL 322 V+ P S +L+WR+F + A P P+ + W+ D L Sbjct: 301 KVNKTKPP----VSLHGQLLWRDFNNLIAHSANAQSPGSWGRMQDNPYCRNVPWSSDPKL 356 Query: 323 LQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLL 381 L+AWK G TGFP IDA M QL T GW+H+ R A FL + DL W +G ++F +LL Sbjct: 357 LKAWKDGKTGFPWIDACMAQLRTEGWIHHLGRHAVACFLTRGDLWQSWEMGADHFEGELL 416 Query: 382 DGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIH 441 D D A NN W W + +G YFR ++P K+ D G +IR W+PEL +P +YI+ Sbjct: 417 DADYALNNFNWLWLSCSGF-FYQYFRCYSPVAFQKKNDVNGNYIRKWVPELAGLPAKYIY 475 Query: 442 ----APHSWLDKNDLSL--NYPLPIVDH 463 AP S L+ + L NYP PIVDH Sbjct: 476 EPWKAPSSVLNAAGIKLGDNYPNPIVDH 503 >gi|229918425|ref|YP_002887071.1| cryptochrome, DASH family [Exiguobacterium sp. AT1b] gi|229469854|gb|ACQ71626.1| cryptochrome, DASH family [Exiguobacterium sp. AT1b] Length = 404 Score = 160 bits (404), Expect = 6e-37, Method: Compositional matrix adjust. Identities = 132/435 (30%), Positives = 200/435 (45%), Gaps = 50/435 (11%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQW--RQHGI---SARQSHFIYASL 65 ++W +NDLR+ D+ L A H+ D + F +P Q+ ++G+ + F+ SL Sbjct: 4 IIWYQNDLRVDDHLPLEEALHHDDP-IEGHFFISPNQFIENRYGVIPLGNERLRFLKESL 62 Query: 66 LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125 V SL GI F H +E LD +L + R NE RR+ + K Sbjct: 63 EDVSGSLDALGIPFYVHVGH----PLETLDP------SDRLLFQRAVGYNERRRENEVMK 112 Query: 126 RLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185 R + K+F+ L N +M ++T FRKA V+ D+R + + + T Sbjct: 113 RWKG--TYKTFEGFTLFEKED--NPFEKMPFLFTEFRKA-----VEYDVRPRELISRKAT 163 Query: 186 GPVTPSNIPRFFDYPFQAIDPMFPI--GEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS 243 P Q FP GE A L + + Y E R+ + ++ Sbjct: 164 AATREVTFPFSIQEVKQDPRTAFPFKGGELAAKRRLNDYLSVPIRTYKETRNGFGVDDST 223 Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFS----WLN-ELIWREFYRHLMAFY 298 +LS YL+ G LSPR+ F +L ++ + WL EL+WREF++ + Sbjct: 224 KLSAYLANGSLSPRRV-------FFELEAHERTHGVNESTYWLYFELLWREFFQ-----W 271 Query: 299 PSVCMGKPFIP----WTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLR 354 ++ GK +++ +W D +++ W++G TG +DA MR+LN GWM NR R Sbjct: 272 VALDQGKKLFRSQGIRSKRKDWRVDPDVVETWRRGETGVDFVDAFMRELNATGWMSNRGR 331 Query: 355 MITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQ 414 I A++ K+L DWR G YF S+L+D D+ASN G W + A GNDS R FN Q Sbjct: 332 QIVANYFAKELKQDWRYGASYFESKLIDYDVASNWGNWAYQAGVGNDSRD--RRFNIERQ 389 Query: 415 GKRFDPQGTFIRHWL 429 +DP F WL Sbjct: 390 QFTYDPDRAFRNKWL 404 >gi|120437052|ref|YP_862738.1| cryptochrome-like DNA photolyase family protein [Gramella forsetii KT0803] gi|117579202|emb|CAL67671.1| cryptochrome-like DNA photolyase family protein [Gramella forsetii KT0803] Length = 438 Score = 160 bits (404), Expect = 6e-37, Method: Compositional matrix adjust. Identities = 129/446 (28%), Positives = 209/446 (46%), Gaps = 27/446 (6%) Query: 1 MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQW--RQHGI---SA 55 M + LVW RNDLRI+D++AL AC NS K+I ++ P + Q G Sbjct: 5 MPKKQTTNTGLVWFRNDLRISDHEALTTAC-NSHEKIIGIYCFDPRHYLKDQFGFIKTGK 63 Query: 56 RQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEIN 115 +S F+ ++ ++QK+L I Q D E + Y V +++ +++ Sbjct: 64 FRSKFLIETIEELQKNLETLNIELLVFQEKPEDIIPEIISEYS----VKSVYFQKEWTQE 119 Query: 116 EVRRDKLLEKRLQHRVICKSFDDSVLLPPGSI-LNHALQMYKVYTPFRKALIQNLVQADL 174 E +K + +RL + + S+ L P I + + KVYT FRK+ + +L Sbjct: 120 EHDVEKEV-RRLVNDIEFNSYYQQFLFHPEDIPFSSFNDIPKVYTEFRKSCEKYSKVREL 178 Query: 175 RSLPVPAIRLTGPVTPSNIPRFFDYPFQAID----PMFPI--GEQNALHILRKF---CKE 225 +LP P P + IP F D + FP GE A ++++ K Sbjct: 179 VNLPSPLPARNLP-EKAKIPSFKDLGHDDYEKDKRSAFPFKGGEDQAKKRIQEYFWESKN 237 Query: 226 KVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNEL 285 Y + ++ +S+LS +L+ G +S RQ ++ +K+ + I + + EL Sbjct: 238 LTRYKETRNEMIGANYSSKLSAWLANGSISARQVYHEVKK--FEKEITSNLSTYWLIFEL 295 Query: 286 IWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNT 345 IWR+F++++ + + I +EWN D L+ W G T + ++A MR+++ Sbjct: 296 IWRDFFKYISLKHANKIFKLGGIQ-NRSLEWNYDKQSLKDWIHGNTKYDFVNANMREISN 354 Query: 346 IGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPY 405 G+M NR R SF K+L DWRIG YF S L+D D+ SN G W + + GND P Sbjct: 355 TGFMSNRGRQNVNSFWAKELKQDWRIGAAYFESLLIDYDVHSNWGNWMYNSGVGND--PR 412 Query: 406 FRIFNPTIQGKRFDPQGTFIRHWLPE 431 R FN Q +R+DP + WL + Sbjct: 413 DRKFNIKNQAERYDPNNEYQDLWLKD 438 >gi|115469358|ref|NP_001058278.1| Os06g0661800 [Oryza sativa Japonica Group] gi|113596318|dbj|BAF20192.1| Os06g0661800 [Oryza sativa Japonica Group] Length = 547 Score = 160 bits (404), Expect = 6e-37, Method: Compositional matrix adjust. Identities = 141/498 (28%), Positives = 233/498 (46%), Gaps = 59/498 (11%) Query: 1 MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSH- 59 M+ + V +VW RNDLR+ DN+A+ A SDA V+ V+ P ISA +H Sbjct: 42 MRRSGGGGVAIVWFRNDLRVLDNEAVVRAWAASDA-VLPVYCVDPR------ISAGSTHY 94 Query: 60 ------------FIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLF 107 F+ L ++++L+++G+ D L S ++ Sbjct: 95 FGFPKTGALRAQFLIECLEDLKRNLTKQGLDLLIRHGKPED----ILPSIAKAVTAHTVY 150 Query: 108 YNRQYEINEVRRDKLLEKRLQHRVICKSFDDSVLLPP--------GSILNHA-------L 152 +++ E+ + L+ K L+ VI + + P G+ L H Sbjct: 151 AHKETCSEELLVEHLVRKGLEQVVIPQGGASNQKKPRNPKLQLIWGATLYHVDDLPFSVN 210 Query: 153 QMYKVYTPFRKAL-----IQNLVQADLRSLPVPAI---RLTGPVTPSNIPRFFDYPFQAI 204 + VYT FRKA+ ++N + P P + G T + +A Sbjct: 211 NLPDVYTQFRKAVESKSSVRNCSKLPPSLGPPPGSGLDEIGGWGTVPTLESLGLSMTKAE 270 Query: 205 DPM-FPIGEQNALHILRKFC--KEKVYYYVEQRD-IPAIQGTSQLSPYLSIGVLSPRQCW 260 M F GE AL + ++ K+++ Y E R+ + +++ SP+L+ G LSPR Sbjct: 271 KGMHFVGGESAALGRVHEYFWKKDQLKVYKETRNGMLGPDYSTKFSPWLASGSLSPRYIC 330 Query: 261 NRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVC--MGKPFIPWTEKIEWNK 318 +K + + + L ELIWR+++R + A Y + +G P + +W++ Sbjct: 331 EEVKRYEKQRIANDST--YWVLFELIWRDYFRFISAKYGNSIFHLGGPR---NVESKWSQ 385 Query: 319 DSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMS 378 D L ++W+ G TG+P+IDA M++L G+M NR R I SFLV+D+ +DWR+G E+F + Sbjct: 386 DQALFESWRDGRTGYPLIDANMKELLATGFMSNRGRQIVCSFLVRDMGIDWRMGAEWFET 445 Query: 379 QLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQ 438 LLD D ASN G W + A GND R F+ Q K +DP G ++ +WLPEL ++ + Sbjct: 446 CLLDYDPASNYGNWTYGAGVGNDPRED-RYFSIPKQAKTYDPDGEYVAYWLPELRSIAKE 504 Query: 439 YIHAPHSWLDKNDLSLNY 456 + P + K + L + Sbjct: 505 RRNFPGASYIKQVVPLKF 522 >gi|75322263|sp|Q651U1|CRYD_ORYSJ RecName: Full=Cryptochrome DASH, chloroplastic/mitochondrial; Flags: Precursor gi|52075904|dbj|BAD45850.1| putative cryptochrome dash [Oryza sativa Japonica Group] gi|52077386|dbj|BAD46426.1| putative cryptochrome dash [Oryza sativa Japonica Group] Length = 582 Score = 159 bits (403), Expect = 8e-37, Method: Compositional matrix adjust. Identities = 141/498 (28%), Positives = 233/498 (46%), Gaps = 59/498 (11%) Query: 1 MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSH- 59 M+ + V +VW RNDLR+ DN+A+ A SDA V+ V+ P ISA +H Sbjct: 77 MRRSGGGGVAIVWFRNDLRVLDNEAVVRAWAASDA-VLPVYCVDPR------ISAGSTHY 129 Query: 60 ------------FIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLF 107 F+ L ++++L+++G+ D L S ++ Sbjct: 130 FGFPKTGALRAQFLIECLEDLKRNLTKQGLDLLIRHGKPED----ILPSIAKAVTAHTVY 185 Query: 108 YNRQYEINEVRRDKLLEKRLQHRVICKSFDDSVLLPP--------GSILNHA-------L 152 +++ E+ + L+ K L+ VI + + P G+ L H Sbjct: 186 AHKETCSEELLVEHLVRKGLEQVVIPQGGASNQKKPRNPKLQLIWGATLYHVDDLPFSVN 245 Query: 153 QMYKVYTPFRKAL-----IQNLVQADLRSLPVPAI---RLTGPVTPSNIPRFFDYPFQAI 204 + VYT FRKA+ ++N + P P + G T + +A Sbjct: 246 NLPDVYTQFRKAVESKSSVRNCSKLPPSLGPPPGSGLDEIGGWGTVPTLESLGLSMTKAE 305 Query: 205 DPM-FPIGEQNALHILRKFC--KEKVYYYVEQRD-IPAIQGTSQLSPYLSIGVLSPRQCW 260 M F GE AL + ++ K+++ Y E R+ + +++ SP+L+ G LSPR Sbjct: 306 KGMHFVGGESAALGRVHEYFWKKDQLKVYKETRNGMLGPDYSTKFSPWLASGSLSPRYIC 365 Query: 261 NRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVC--MGKPFIPWTEKIEWNK 318 +K + + + L ELIWR+++R + A Y + +G P + +W++ Sbjct: 366 EEVKRYEKQRIANDST--YWVLFELIWRDYFRFISAKYGNSIFHLGGPR---NVESKWSQ 420 Query: 319 DSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMS 378 D L ++W+ G TG+P+IDA M++L G+M NR R I SFLV+D+ +DWR+G E+F + Sbjct: 421 DQALFESWRDGRTGYPLIDANMKELLATGFMSNRGRQIVCSFLVRDMGIDWRMGAEWFET 480 Query: 379 QLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQ 438 LLD D ASN G W + A GND R F+ Q K +DP G ++ +WLPEL ++ + Sbjct: 481 CLLDYDPASNYGNWTYGAGVGNDPRED-RYFSIPKQAKTYDPDGEYVAYWLPELRSIAKE 539 Query: 439 YIHAPHSWLDKNDLSLNY 456 + P + K + L + Sbjct: 540 RRNFPGASYIKQVVPLKF 557 >gi|308799831|ref|XP_003074697.1| CRY DASH-like protein (ISS) [Ostreococcus tauri] gi|116000867|emb|CAL50547.1| CRY DASH-like protein (ISS) [Ostreococcus tauri] Length = 787 Score = 159 bits (402), Expect = 9e-37, Method: Compositional matrix adjust. Identities = 138/503 (27%), Positives = 222/503 (44%), Gaps = 74/503 (14%) Query: 11 LVWLRNDLRITDN----KALYAACHNSDAKVIAVFIATPEQWR--QHGIS---ARQSHFI 61 ++W RNDLR+ DN +A A +SD +V+ V++ ++ + G++ A + F Sbjct: 248 VIWFRNDLRLLDNACVARAATLASESSDVEVVPVYVFDETYFKPSKRGLARFGAGRGKFT 307 Query: 62 YASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDK 121 + ++ SL G +C D I L R T + + E D Sbjct: 308 LECVGDLKTSLRALGSDLLV-RCGKSRDVIAELTLTGANDR-TIILTQTEVTSEETEMDV 365 Query: 122 LLEKRLQHRVICKSFDDSVLLPPGSILNHA-----------LQMYKVYTPFRKALIQNLV 170 +E+ + R + ++ GS L H + V+TPFR + Sbjct: 366 AVERATRERARGGAASATMERHWGSTLYHIDDVPFDVTSGLSDLPDVFTPFRNKVESKCK 425 Query: 171 QADLRSLPVPAIRLTGPVTPSN-----IPRFFDYPFQAIDPM------------------ 207 D+ +P P G V S +P+ D PF + + Sbjct: 426 VRDV--IPAPTANELGHVPASVEGFEWMPKPSDLPFASSEIAMDCDKRIKDCLDERSVLD 483 Query: 208 FPIGEQNALHILRKFC--KEKVYYYVEQRD-IPAIQGTSQLSPYLSIGVLSPRQCWNRLK 264 F GE NAL ++ + +++ Y E R+ + +++L+P+L++G +SPR + ++ Sbjct: 484 FKGGESNALARVKYYLWESDRLATYFETRNGMLGGDYSTKLAPWLALGCVSPRHVVSEIR 543 Query: 265 EEFVDLLIKPKSGAFSWLNELIWREFYRHLM------AFYPSVCMGKPFIPWTEKIEWNK 318 + ++ KS + + ELIWR+F++ F+ G+ + W + Sbjct: 544 R-YESERVENKS-TYWVIFELIWRDFFKFFALKHGNKIFHLDGTAGR-------RASWKR 594 Query: 319 DSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMS 378 D +L+AWK G TG+P+IDA MR+L G+M NR R AS+L D +DWR G ++F Sbjct: 595 DEKILKAWKTGTTGYPLIDANMRELAATGFMSNRGRQNVASWLALDAGIDWRHGADWFEH 654 Query: 379 QLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQ 438 LLD D ASN G W AA + F I Q K +DP G +I+ W+ EL VP Sbjct: 655 HLLDYDTASNWGNWCAAAGMTGGRINRFNIAK---QTKDYDPAGEYIKTWVKELAEVPAA 711 Query: 439 YI----HAPHSWLDKNDLSLNYP 457 YI AP D+ + LNYP Sbjct: 712 YIADPNQAPRELRDR--IGLNYP 732 >gi|260800305|ref|XP_002595074.1| hypothetical protein BRAFLDRAFT_60127 [Branchiostoma floridae] gi|229280316|gb|EEN51085.1| hypothetical protein BRAFLDRAFT_60127 [Branchiostoma floridae] Length = 507 Score = 159 bits (402), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 147/498 (29%), Positives = 224/498 (44%), Gaps = 61/498 (12%) Query: 13 WLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGI--SARQSHFIYASLLQVQK 70 W R LR DN +L A S V V++ ++H I A F+ L ++ Sbjct: 12 WFRKGLRFHDNPSLLHALRTS-RHVYPVYVVDQNWMKEHDIRYGANWWRFVIQCLEELDT 70 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRV----TKLFYN-RQYEINEVRRDKLLEK 125 L + G+ + S D E + + Q T+ FY R + ++ D +E Sbjct: 71 RLRKYGLRLFVVRGSAEDFFKEHFRKWKVTQLTHDVDTEPFYRIRDVAVRKIASDMGVEV 130 Query: 126 RLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRK-------ALIQNLVQADLRSLP 178 D +V G+ + KVY K A ++ +LP Sbjct: 131 VTHVAHTLYDIDRTVERNGGTPPLTYRKFLKVYNEMGKPPKEKETATTEHFANC---TLP 187 Query: 179 VPAI--RLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEK--VYYYVEQR 234 A+ + VT + D+P + F GE AL L K ++K V + + + Sbjct: 188 PEALQDKKFDMVTLEELGMRCDFPAK-----FVGGETEALRRLEKSLEDKDWVLKFEKPK 242 Query: 235 DIPA--IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGA---FSWLNELIWRE 289 P + T+ LSPY+++G LS R +++L + + K K+ + S +LIWRE Sbjct: 243 TSPNSLLPSTTVLSPYITVGCLSARLFYHQLDK----IYSKAKNHSQPPVSLHGQLIWRE 298 Query: 290 FYRHLMAFYPS--------VCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMR 341 F+ A P+ VC+ +I WNK+ L W+ TGFP IDAAM Sbjct: 299 FFYTAAAHTPNFNQMEGNRVCL---------QIPWNKNDEHLTRWRNAQTGFPWIDAAMT 349 Query: 342 QLNTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGN 400 QL GW+H+ R A FL + DL + W G + F LLD D + N G W W +++ Sbjct: 350 QLRKEGWIHHLARHAVACFLTRGDLWISWEEGMKVFEELLLDADWSLNAGNWMWLSASAF 409 Query: 401 DSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIH----APHSWLDKND--LSL 454 YFR+++P + GK+ DP+GTFIRH+LP L N P +YI+ AP + +K + Sbjct: 410 FH-QYFRVYSPIVFGKKTDPKGTFIRHYLPVLKNFPKEYIYEPWKAPRNVQEKAGCIVGK 468 Query: 455 NYPLPIVDHKKACHHTLN 472 +YP PIVDHK+A L+ Sbjct: 469 DYPRPIVDHKEASQRNLD 486 >gi|75320690|sp|Q5IFN2|CRYD_OSTTA RecName: Full=Cryptochrome DASH, chloroplastic/mitochondrial; Flags: Precursor gi|51948350|gb|AAU14279.1| CRY DASH-like protein [Ostreococcus tauri] Length = 546 Score = 159 bits (402), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 138/503 (27%), Positives = 222/503 (44%), Gaps = 74/503 (14%) Query: 11 LVWLRNDLRITDN----KALYAACHNSDAKVIAVFIATPEQWR--QHGIS---ARQSHFI 61 ++W RNDLR+ DN +A A +SD +V+ V++ ++ + G++ A + F Sbjct: 7 VIWFRNDLRLLDNACVARAATLASESSDVEVVPVYVFDETYFKPSKRGLARFGAGRGKFT 66 Query: 62 YASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDK 121 + ++ SL G +C D I L R T + + E D Sbjct: 67 LECVGDLKTSLRALGSDLLV-RCGKSRDVIAELTLTGANDR-TIILTQTEVTSEETEMDV 124 Query: 122 LLEKRLQHRVICKSFDDSVLLPPGSILNHA-----------LQMYKVYTPFRKALIQNLV 170 +E+ + R + ++ GS L H + V+TPFR + Sbjct: 125 AVERATRERARGGAASATMERHWGSTLYHIDDVPFDVTSGLSDLPDVFTPFRNKVESKCK 184 Query: 171 QADLRSLPVPAIRLTGPVTPSN-----IPRFFDYPFQAIDPM------------------ 207 D+ +P P G V S +P+ D PF + + Sbjct: 185 VRDV--IPAPTANELGHVPASVEGFEWMPKPSDLPFASSEIAMDCDKRIKDCLDERSVLD 242 Query: 208 FPIGEQNALHILRKFC--KEKVYYYVEQRD-IPAIQGTSQLSPYLSIGVLSPRQCWNRLK 264 F GE NAL ++ + +++ Y E R+ + +++L+P+L++G +SPR + ++ Sbjct: 243 FKGGESNALARVKYYLWESDRLATYFETRNGMLGGDYSTKLAPWLALGCVSPRHVVSEIR 302 Query: 265 EEFVDLLIKPKSGAFSWLNELIWREFYRHLM------AFYPSVCMGKPFIPWTEKIEWNK 318 + ++ KS + + ELIWR+F++ F+ G+ + W + Sbjct: 303 R-YESERVENKS-TYWVIFELIWRDFFKFFALKHGNKIFHLDGTAGR-------RASWKR 353 Query: 319 DSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMS 378 D +L+AWK G TG+P+IDA MR+L G+M NR R AS+L D +DWR G ++F Sbjct: 354 DEKILKAWKTGTTGYPLIDANMRELAATGFMSNRGRQNVASWLALDAGIDWRHGADWFEH 413 Query: 379 QLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQ 438 LLD D ASN G W AA + F I Q K +DP G +I+ W+ EL VP Sbjct: 414 HLLDYDTASNWGNWCAAAGMTGGRINRFNIAK---QTKDYDPAGEYIKTWVKELAEVPAA 470 Query: 439 YI----HAPHSWLDKNDLSLNYP 457 YI AP D+ + LNYP Sbjct: 471 YIADPNQAPRELRDR--IGLNYP 491 >gi|222636034|gb|EEE66166.1| hypothetical protein OsJ_22248 [Oryza sativa Japonica Group] Length = 547 Score = 159 bits (402), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 141/498 (28%), Positives = 232/498 (46%), Gaps = 59/498 (11%) Query: 1 MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSH- 59 M+ + V +VW RNDLR+ DN+A+ A SDA V V+ P ISA +H Sbjct: 42 MRRSGGGGVAIVWFRNDLRVLDNEAVVRAWAASDA-VFPVYCVDPR------ISAGSTHY 94 Query: 60 ------------FIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLF 107 F+ L ++++L+++G+ D L S ++ Sbjct: 95 FGFPKTGALRAQFLIECLEDLKRNLTKQGLDLLIRHGKPED----ILPSIAKAVTAHTVY 150 Query: 108 YNRQYEINEVRRDKLLEKRLQHRVICKSFDDSVLLPP--------GSILNHA-------L 152 +++ E+ + L+ K L+ VI + + P G+ L H Sbjct: 151 AHKETCSEELLVEHLVRKGLEQVVIPQGGASNQKKPRNPKLQLIWGATLYHVDDLPFSVN 210 Query: 153 QMYKVYTPFRKAL-----IQNLVQADLRSLPVPAI---RLTGPVTPSNIPRFFDYPFQAI 204 + VYT FRKA+ ++N + P P + G T + +A Sbjct: 211 NLPDVYTQFRKAVESKSSVRNCSKLPPSLGPPPGSGLDEIGGWGTVPTLESLGLSMTKAE 270 Query: 205 DPM-FPIGEQNALHILRKFC--KEKVYYYVEQRD-IPAIQGTSQLSPYLSIGVLSPRQCW 260 M F GE AL + ++ K+++ Y E R+ + +++ SP+L+ G LSPR Sbjct: 271 KGMHFVGGESAALGRVHEYFWKKDQLKVYKETRNGMLGPDYSTKFSPWLASGSLSPRYIC 330 Query: 261 NRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVC--MGKPFIPWTEKIEWNK 318 +K + + + L ELIWR+++R + A Y + +G P + +W++ Sbjct: 331 EEVKRYEKQRIANDST--YWVLFELIWRDYFRFISAKYGNSIFHLGGPR---NVESKWSQ 385 Query: 319 DSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMS 378 D L ++W+ G TG+P+IDA M++L G+M NR R I SFLV+D+ +DWR+G E+F + Sbjct: 386 DQALFESWRDGRTGYPLIDANMKELLATGFMSNRGRQIVCSFLVRDMGIDWRMGAEWFET 445 Query: 379 QLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQ 438 LLD D ASN G W + A GND R F+ Q K +DP G ++ +WLPEL ++ + Sbjct: 446 CLLDYDPASNYGNWTYGAGVGNDPRED-RYFSIPKQAKTYDPDGEYVAYWLPELRSIAKE 504 Query: 439 YIHAPHSWLDKNDLSLNY 456 + P + K + L + Sbjct: 505 RRNFPGASYIKQVVPLKF 522 >gi|255066743|ref|ZP_05318598.1| deoxyribodipyrimidine photolyase [Neisseria sicca ATCC 29256] gi|255049071|gb|EET44535.1| deoxyribodipyrimidine photolyase [Neisseria sicca ATCC 29256] Length = 463 Score = 159 bits (401), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 137/477 (28%), Positives = 206/477 (43%), Gaps = 72/477 (15%) Query: 6 AMSVH-LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYAS 64 AM H LVW R +LRI DN AL AA V V++A Q + RQ F Y + Sbjct: 36 AMQAHTLVWFRRNLRIRDNAALSAAVKRG-LPVAGVWVA---QGSSEIPNPRQDWFHYQA 91 Query: 65 LLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLE 124 + SL+ +G+ + +E L + + V + + Y +E+ +D + Sbjct: 92 AAALHGSLAARGVALYAV------NRVEELPALATRLNVQTVIADEAYTSSEIGQDNRIW 145 Query: 125 KRL-QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIR 183 + L + V + +D + I+ Y + +++A + Q R Sbjct: 146 RILDEQGVAFERVNDRAIFAKADIMGSHGAPYTDFPHYKEAWLVLFRQ-----------R 194 Query: 184 LTGPVTPSNIPRFFDYPFQAIDPMFPI--GEQNALHILR----------KFCKEKVYYYV 231 G F + P FP G+Q+ + R + +E + +Y Sbjct: 195 FGGQDVGGGRAEIFQTTSVEM-PSFPAWNGQQDMVSAQRGGEDEAGKQWQHFEENIGFYP 253 Query: 232 EQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFY 291 +D PA +GTS+LS YLS G +SPR + GA +WL+ LI R+FY Sbjct: 254 IMKDFPARKGTSRLSAYLSAGCISPRVLATEASGQ----------GADAWLDNLIQRDFY 303 Query: 292 RHLMAFY------PSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNT 345 + L A++ S PF L + W+QG TGFP+IDAAMR L + Sbjct: 304 QQL-AYHRARIEPESAAESAPF-----------SDDLTERWRQGETGFPLIDAAMRSLKS 351 Query: 346 IGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPY 405 GW+H LR +TA FL L G +F +Q D D A N G WQ AA + Sbjct: 352 SGWLHPALRSLTAEFLCGVLHQPSEHGIVWFATQQTDFDPALNEGNWQTAARNA-----H 406 Query: 406 FRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSL-NYPLPIV 461 R + +R DP GTF+R +PEL ++P +H P WL +++ YP P+V Sbjct: 407 RRSIDIIQTARRLDPDGTFVRRHIPELAHLPVNLVHTP--WLASSEIDAHGYPPPVV 461 >gi|303283874|ref|XP_003061228.1| predicted protein [Micromonas pusilla CCMP1545] gi|226457579|gb|EEH54878.1| predicted protein [Micromonas pusilla CCMP1545] Length = 559 Score = 158 bits (400), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 98/252 (38%), Positives = 127/252 (50%), Gaps = 16/252 (6%) Query: 242 TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSV 301 T+ LSPYL G +SPR ++ LK+ D K + S +L+WREFY +L AF Sbjct: 299 TTALSPYLKFGCVSPRTFYHELKDVLNDAKGKHSAPPVSLEGQLLWREFY-YLAAFGTPN 357 Query: 302 CMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFL 361 P +I W D L AW++G TGFP IDA M QL GW+H+ R A FL Sbjct: 358 YHKMEGNPICRQIPWTWDEERLAAWEEGRTGFPWIDACMHQLRQEGWLHHLARHAVACFL 417 Query: 362 VK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDP 420 + DL V W G + F L+D D A N G W W S YFR++ P GK++D Sbjct: 418 TRGDLFVHWEAGAKVFDRDLVDADPALNYGNWMW-LSCSCFFYQYFRVYGPVSFGKKYDK 476 Query: 421 QGTFIRHWLPELNNVPTQYIHAPHSWLDKND--------LSLNYPLPIVDH---KKACHH 469 GTFIR +LP L ++P +YI+ P W D + ++YP PIVDH K C Sbjct: 477 DGTFIRKYLPVLKDMPAKYIYEP--WTAPADVQKKAGCVIGVDYPPPIVDHAVASKECIE 534 Query: 470 TLNQYYAAKKQS 481 L Y A K Sbjct: 535 KLAVAYKAHKDG 546 Score = 38.9 bits (89), Expect = 2.0, Method: Compositional matrix adjust. Identities = 24/72 (33%), Positives = 35/72 (48%), Gaps = 3/72 (4%) Query: 5 TAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYAS 64 T S+H W R LR+ DN AL AC ++ A V +F+ P + A + F+ S Sbjct: 7 TTRSIH--WFRKGLRVHDNPALVDACADATA-VQPIFVLDPWFLTPSRVGANRVRFLLQS 63 Query: 65 LLQVQKSLSQKG 76 L + SL +G Sbjct: 64 LTDLDASLRARG 75 >gi|86134106|ref|ZP_01052688.1| cryptochrome, DASH family [Polaribacter sp. MED152] gi|85820969|gb|EAQ42116.1| cryptochrome, DASH family [Polaribacter sp. MED152] Length = 436 Score = 158 bits (400), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 124/441 (28%), Positives = 203/441 (46%), Gaps = 31/441 (7%) Query: 8 SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGIS-ARQSHFIYASLL 66 + L+W RN+LR DN ++ A N D KVIA++ P+ +++ + + F LL Sbjct: 7 TTGLIWFRNNLRTQDNTSIQKAIQNHD-KVIAIYFFDPKYFKEDEFGFQKTAKFRAQFLL 65 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 + L Q+ + FD L + +V ++ +++ E+ +KL+ K Sbjct: 66 ETITDLKQQLKDLNITLLTYFDAPENQLLNITETYKVDTIYTQKEWTKEELDTNKLVLKT 125 Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKAL-----IQNLVQADLRS----- 176 + V D L P ++ N+ + V+T FRK L IQ + D Sbjct: 126 MSDTVNFVEDYDQFLYHPETVSNNFSNIPNVFTQFRKKLEKYVKIQEEILIDKHDDSNLI 185 Query: 177 ---LPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKE--KVYYYV 231 +P+++ G +P+ +PF+ GE AL L + E KV +Y Sbjct: 186 HNPTEIPSLKELG-FNDFVMPKKSAFPFKG-------GETAALERLNYYLFESKKVGFYK 237 Query: 232 EQRD-IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREF 290 + R+ + +++ SP+L+ G LS R + ++K+ + + + ELIWR++ Sbjct: 238 KTRNGLVGTDYSTKFSPWLANGSLSARTIYYQIKK--YEAEFGSNQSTYWVIFELIWRDY 295 Query: 291 YRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMH 350 ++++ Y I +WN D + +Q W G T ++A M +L GWM Sbjct: 296 FKYISLKYGYEIFKIGGIL-ERNYQWNVDKNCIQDWINGNTKDDFVNANMIELKETGWMS 354 Query: 351 NRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFN 410 NR R AS+ K+LL DWRIG YF S LLD D+ SN G W + A GND P R FN Sbjct: 355 NRGRQNVASYFAKELLQDWRIGAAYFESLLLDYDVHSNYGNWMYVAGVGND--PRDRKFN 412 Query: 411 PTIQGKRFDPQGTFIRHWLPE 431 +Q +R+D F + WL + Sbjct: 413 TQLQAERYDANHKFRKLWLEK 433 >gi|257053657|ref|YP_003131490.1| cryptochrome, DASH family [Halorhabdus utahensis DSM 12940] gi|256692420|gb|ACV12757.1| cryptochrome, DASH family [Halorhabdus utahensis DSM 12940] Length = 478 Score = 158 bits (399), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 142/489 (29%), Positives = 226/489 (46%), Gaps = 51/489 (10%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQH-----------GISARQSH 59 +VWLR DLR DN L AAC +V+ V+ P ++ Q G+ A ++ Sbjct: 6 VVWLRRDLRTRDNATLAAACAAD--RVLPVYCFEPRRYGQRAFGGAASFEYDGVGAGRAQ 63 Query: 60 FIYASLLQVQKSLSQKGI-VFQYHQCSN--FDDSIEWLDSYCLQQRVTKLFYNRQYEINE 116 F ++ ++ L + G +F H + D +E +D+ L + + R E ++ Sbjct: 64 FEREAVGDLRDRLREIGSDLFVRHGRPDAVLPDLVEAVDADHLHYQTLPIPEERTRE-HQ 122 Query: 117 VRRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKAL-IQNLVQADLR 175 VRR L E R + LP +M +TP+R+++ ++ V+ + Sbjct: 123 VRR-ALPEAVTVERHWTHTLHHVEDLP-----TPYDEMPDTFTPWRQSVEAESRVREPIE 176 Query: 176 SLPVPAIRLTGPVTPSNIPRFFD------YPFQAIDPM-FPIGEQNALHILRKFCKEKVY 228 + VP + P P IP D P P+ F GE L ++ E Sbjct: 177 APAVPPVPADAP-QPGPIPELADLGVVGDVPDDDRMPLDFEGGETPGQRRLEQYVWETDS 235 Query: 229 YYVEQRDIPAIQG---TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLN-E 284 ++ + G +S+ SP+ ++G LSPR + +KE + + + + WLN E Sbjct: 236 LRAYKQTRNGLVGRDYSSKFSPWQNVGCLSPRDVYQTVKEYERERV---SNDSTYWLNFE 292 Query: 285 LIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLN 344 L WR+F++ A Y I ++W +D + W++G TG P +DAAMR+L Sbjct: 293 LRWRDFFQFQFAKYGGKFFTPGGIRERTDLDWRRDESDFRRWQEGRTGVPFVDAAMRELV 352 Query: 345 TIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVP 404 G++ NR R ASFLV DL +DWR G ++ LLD D ASN G W + A GNDS Sbjct: 353 ATGYVSNRARQNAASFLVHDLGIDWRWGGAHYEHHLLDYDPASNYGNWAYIAKVGNDSRE 412 Query: 405 YFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSW-LDKND-------LSLNY 456 F+ Q +R+DP G +I W PEL+ + +Y P W +D+ + L +Y Sbjct: 413 GG--FDVLSQAERYDPGGEYISRWCPELDGLIAEYAREP--WRMDEEEQRERGLVLGEDY 468 Query: 457 PLPIVDHKK 465 P P+VD ++ Sbjct: 469 PEPMVDPER 477 >gi|238757987|ref|ZP_04619168.1| Deoxyribodipyrimidine photo-lyase [Yersinia aldovae ATCC 35236] gi|238703741|gb|EEP96277.1| Deoxyribodipyrimidine photo-lyase [Yersinia aldovae ATCC 35236] Length = 120 Score = 158 bits (399), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 71/114 (62%), Positives = 83/114 (72%) Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425 ++DWR GE YFM+QL+DG LA+NNGGWQWAASTG D+ PYFRIFNPT QG+RFD G FI Sbjct: 1 MIDWREGERYFMAQLIDGSLAANNGGWQWAASTGTDAAPYFRIFNPTTQGERFDKDGAFI 60 Query: 426 RHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479 R WLPEL VP IH P W D+ L+YPLP+VDHK A TL + AK+ Sbjct: 61 RRWLPELAAVPDSDIHQPWRWADRQQRHLDYPLPLVDHKLARLATLAAFETAKR 114 >gi|218198696|gb|EEC81123.1| hypothetical protein OsI_24002 [Oryza sativa Indica Group] Length = 547 Score = 158 bits (399), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 140/498 (28%), Positives = 231/498 (46%), Gaps = 59/498 (11%) Query: 1 MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSH- 59 M+ + V +VW RNDLR+ DN+A+ A SDA V+ V+ P ISA +H Sbjct: 42 MRRSGGGGVAIVWFRNDLRVLDNEAVVRAWAASDA-VLPVYCVDPR------ISAGSTHY 94 Query: 60 ------------FIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLF 107 F+ L ++++L+++G+ D L S ++ Sbjct: 95 FGFPKTGALRAQFLIECLEDLKRNLTKQGLDLLIRHGKPED----ILPSIAKAVTAHTVY 150 Query: 108 YNRQYEINEVRRDKLLEKRLQHRVICKSFDDSVLLPP--------GSILNHA-------L 152 +++ E+ + L+ K L+ VI + + P G+ L H Sbjct: 151 AHQETCSEELLVEHLVRKGLEQVVIPQGGASNQKKPRNPKLQLIWGATLYHVDDLPFSVN 210 Query: 153 QMYKVYTPFRKAL-----IQNLVQADLRSLPVPAI---RLTGPVTPSNIPRFFDYPFQAI 204 + VYT FRKA+ ++N + P P + G T + +A Sbjct: 211 NLPDVYTQFRKAVESKSSVRNCSKLPPSLGPPPGSGLDEIGGWGTVPTLESLGLSMTKAE 270 Query: 205 DPM-FPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQG---TSQLSPYLSIGVLSPRQCW 260 M F GE AL + ++ +K V ++ + G +++ SP+L+ G LSPR Sbjct: 271 KGMHFVGGESAALGRVHEYFWKKDQLKVYKKTRNGMLGPDYSTKFSPWLASGSLSPRYIC 330 Query: 261 NRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVC--MGKPFIPWTEKIEWNK 318 +K + + + L ELIWR+++R + A Y + +G P + +W++ Sbjct: 331 EEVKRYEKQRIANDST--YWVLFELIWRDYFRFISAKYGNSIFHLGGPR---NVESKWSQ 385 Query: 319 DSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMS 378 D L ++W+ G TG+P+IDA M++L G+M NR R I SFLV+D+ +DWR+G E+F + Sbjct: 386 DQALFESWRDGRTGYPLIDANMKELLATGFMSNRGRQIVCSFLVRDMGIDWRMGAEWFET 445 Query: 379 QLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQ 438 LLD D ASN G W + A GND R F+ Q K +DP G ++ +WLPEL ++ + Sbjct: 446 CLLDYDPASNYGNWTYGAGVGNDPRED-RYFSIPKQAKTYDPDGEYVAYWLPELRSIAKE 504 Query: 439 YIHAPHSWLDKNDLSLNY 456 + P + K + L + Sbjct: 505 RRNFPGASYIKQVVPLKF 522 >gi|118496971|ref|YP_898021.1| deoxyribodipyrimidine photolyase [Francisella tularensis subsp. novicida U112] gi|194324200|ref|ZP_03057974.1| deoxyribodipyrimidine photolyase family protein [Francisella tularensis subsp. novicida FTE] gi|118422877|gb|ABK89267.1| deoxyribodipyrimidine photolyase [Francisella novicida U112] gi|194321647|gb|EDX19131.1| deoxyribodipyrimidine photolyase family protein [Francisella tularensis subsp. novicida FTE] Length = 499 Score = 158 bits (399), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 136/487 (27%), Positives = 221/487 (45%), Gaps = 39/487 (8%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 + +VW + DLR+TDN AL A D ++ ++I PE W+Q +S RQ F+ L ++ Sbjct: 1 MQIVWFKRDLRVTDNLALSLAAEKGD--ILPLYIIEPELWQQPDMSHRQYLFLSECLEEL 58 Query: 69 QKSLSQKG--IVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEIN-EVRRDKLLEK 125 L++ G ++ D++E + Q + ++ +++ N +RD LEK Sbjct: 59 NTELTRLGQPLILM------IGDAVEVFEQLIQQYPINSVWSHQETWNNWTYQRDIKLEK 112 Query: 126 RLQHRVICKSFDDSVLLPP--GSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIR 183 + I V P ++ H K + K + + +V+A L Sbjct: 113 FFKQNNI-------VWHQPYQNGVVRHLADRDKWALVWHKRVSEKIVEAP-NKLKFICEN 164 Query: 184 LTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIP--AIQG 241 T T +I +D ++ G AL IL F ++ Y ++ P A + Sbjct: 165 QTKIPTAESIGLEYDNCYKRQKG----GRVRALRILDSFLYQRGCGYTKEMSSPVTAFKS 220 Query: 242 TSQLSPYLSIGVLSPRQCW---NRLKEEFVDLLIKPK----SGAFSWLNELIWREFYRHL 294 S+LSPY++ G +S R+ + N+ K+E IK K S S+L+ L W + Sbjct: 221 CSRLSPYIAFGAISIREVYQLANQRKKEIKVSSIKNKTKWLSAMRSFLSRLRWHCHFMQK 280 Query: 295 MAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLR 354 + PS+ + + + +AWK G TG+P+IDA MR L GW++ R+R Sbjct: 281 LEDQPSIEYENLHSAYDQLRTEPLNQQCFEAWKTGNTGYPMIDACMRALIATGWLNFRMR 340 Query: 355 MITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQ 414 + SF L +DWR+ Y D + + Q +G + RI+NP Q Sbjct: 341 AMLMSFASYHLWLDWRVTSLYLARLFTDYEPGIHYS--QVQMQSGTTGINSIRIYNPIKQ 398 Query: 415 GKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQY 474 DP G F R WLPEL NV + IH P WL+K++ +++YP PI+D K+A + Sbjct: 399 SIDQDPNGEFTRRWLPELENVSNENIHTP--WLEKHN-AIDYPDPIIDEKQARKFAADNI 455 Query: 475 YAAKKQS 481 Y +K S Sbjct: 456 YKIRKSS 462 >gi|208780423|ref|ZP_03247764.1| deoxyribodipyrimidine photolyase family protein [Francisella novicida FTG] gi|208743791|gb|EDZ90094.1| deoxyribodipyrimidine photolyase family protein [Francisella novicida FTG] Length = 499 Score = 157 bits (398), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 136/487 (27%), Positives = 222/487 (45%), Gaps = 39/487 (8%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 + +VW + DLR+TDN AL A D ++ ++I PE W+Q +S RQ F+ L ++ Sbjct: 1 MQIVWFKRDLRVTDNLALSLAAEKGD--ILPLYIIEPELWQQPDMSHRQYLFLSECLEEL 58 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINE--VRRDKLLEKR 126 L++ G D++E + +Q+ K ++ Q N+ +RD LEK Sbjct: 59 NTELTKLGQSLAIM----LGDAVEIFEQ-LIQKYNIKNVWSHQETWNDWTYQRDIKLEKF 113 Query: 127 LQHRVIC--KSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL 184 + I + + + V+ AL + + + + +++A + + ++ Sbjct: 114 FKQNNIVWHQPYQNGVVRCLADRDKWAL-------LWHQRMSEKIIRAPTKLKFICESQI 166 Query: 185 TGPVTPSNIPRFFD-YPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIP--AIQG 241 P S + D Y Q G AL IL F ++ Y ++ P A + Sbjct: 167 KIPTAESLGLEYDDCYKRQKG------GRIRALRILDSFLYQRGCSYTKEMSSPVTAFKS 220 Query: 242 TSQLSPYLSIGVLSPRQCW-------NRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHL 294 S+LSPY++ GV+S ++ + N +KE V K S S+L+ L W + Sbjct: 221 CSRLSPYIAFGVISLKEIYQKANQRKNEIKESRVKNKTKWLSAMRSFLSRLRWHCHFMQK 280 Query: 295 MAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLR 354 + S+ + + + +AWK G TG+P+IDA MR L GW++ R+R Sbjct: 281 LEDQRSIEYENLHSAYDQLRTEPLNQQCFEAWKTGNTGYPMIDACMRALIATGWLNFRMR 340 Query: 355 MITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQ 414 + SF L +DWR+ Y D + + Q +G + RI+NP Q Sbjct: 341 AMLMSFASYHLWLDWRVTSLYLARLFTDYEPGIHYS--QVQMQSGTTGINSIRIYNPIKQ 398 Query: 415 GKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQY 474 DP G FIR WLPEL NV ++ IH P WL+K++ SL+YP PI+D K+A + Sbjct: 399 SIDQDPNGEFIRRWLPELENVSSENIHTP--WLEKHN-SLDYPDPIIDEKQARKFAADNI 455 Query: 475 YAAKKQS 481 Y +K S Sbjct: 456 YKIRKSS 462 >gi|302828718|ref|XP_002945926.1| DNA photolyase [Volvox carteri f. nagariensis] gi|300268741|gb|EFJ52921.1| DNA photolyase [Volvox carteri f. nagariensis] Length = 621 Score = 157 bits (398), Expect = 3e-36, Method: Compositional matrix adjust. Identities = 144/501 (28%), Positives = 223/501 (44%), Gaps = 61/501 (12%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATP--EQWRQHGISARQSHFIYASLLQV 68 ++W R LR+ DN AL AC + A V VFI P Q + + + +F+ SL + Sbjct: 8 ILWFRKGLRLHDNPALLEACRGA-AHVYPVFILDPFFLQQSSYKVGVNRYNFLLESLRDL 66 Query: 69 QKSLSQKG---IVFQYHQCSNFDDSI-EWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLE 124 S +G +V + F EW R+T+L + E++ ++ + Sbjct: 67 DASFRSRGSRLLVLRGKPEEVFPRVFREW--------RITQLCF----EVDTEPYARVRD 114 Query: 125 KRLQHRVICKSFDDSVLLPPGSILNHAL--QMYKVYTPFRKALIQNLVQADLRSLPVPAI 182 R+Q D + + ++H L ++ T R + P P Sbjct: 115 ARIQ------GLADEAGVAVWTAVSHTLYVGLFCSCTAGRHGPVLGGCWLWKEKAPAPGG 168 Query: 183 RLTGPV---TPSN------IPRFFDYPF-QAIDPMFPIGEQNALHILRKFCKEKVY---Y 229 R GP PS +P + + F +A +F GE AL L + + + Sbjct: 169 R-RGPACENAPSTDAATTAVPTWQEVGFTEAPTTIFKGGETEALKRLSASLADSKWVADF 227 Query: 230 YVEQRDIPAIQ--GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIW 287 D A + T+ LSPY+ G LSPR RL E + + S +L+W Sbjct: 228 KKPDTDPAAFERPATTVLSPYVKFGCLSPRLFHARLLEVYRRHRGHSQP-PVSLRGQLLW 286 Query: 288 REFYRHLMAFYPSV--CMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNT 345 REF+ + A P+ G P ++I+W+ D LL AW++ TGFP IDA M QL Sbjct: 287 REFFYTVGAHTPNFHRMDGNPLC---KQIDWDDDEELLAAWREARTGFPWIDAIMTQLRQ 343 Query: 346 IGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVP 404 GWMH+ R A FL + DL V W G + F L+D D N W W +++ S Sbjct: 344 WGWMHHLARHSVACFLTRGDLYVSWERGMQVFEELLIDQDHYLNAANWMWLSASAFFSQ- 402 Query: 405 YFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND--------LSLNY 456 YFR+++P GK++DP+G FIR +LP L ++P++YI+ P W ++ + +Y Sbjct: 403 YFRVYSPISFGKKYDPEGKFIRKFLPVLKDMPSKYIYEP--WTAPSEVQRRAGCVIGRDY 460 Query: 457 PLPIVDHKKACHHTLNQYYAA 477 P P+VDH + + AA Sbjct: 461 PHPVVDHALVSKQNIARMAAA 481 >gi|51948352|gb|AAU14280.1| cryptochrome-like protein 1 [Ostreococcus tauri] Length = 559 Score = 157 bits (398), Expect = 3e-36, Method: Compositional matrix adjust. Identities = 93/255 (36%), Positives = 133/255 (52%), Gaps = 16/255 (6%) Query: 239 IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFY 298 I T+ LSPY+ G +SPR ++ L + +L K S + +L+WREFY +L+A Sbjct: 297 IPSTTALSPYMKFGCVSPRVFYHELTAVYKELEGKHSKPPTSLMGQLMWREFY-YLVAAG 355 Query: 299 PSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITA 358 +I W KD L AW+ TGFP IDAAM QL GW+H+ R A Sbjct: 356 TKNFDKMEGNAICRQIPWKKDRELFAAWENAQTGFPWIDAAMTQLRREGWLHHLARHAVA 415 Query: 359 SFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKR 417 FL + DL + W G + F L+D D A NNG W W + + YFR+++P K+ Sbjct: 416 CFLTRGDLFIHWEWGRDAFDRDLVDADWALNNGNWMWLSCSAF-FYQYFRVYSPIAFAKK 474 Query: 418 FDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND--------LSLNYPLPIVDHKKA--- 466 +D G ++RH+LP L N+P++Y++ P WL D + ++YP PIVDH A Sbjct: 475 YDKDGQYVRHYLPVLKNMPSKYVYEP--WLAPLDVQKKAGCVVGVDYPAPIVDHSAASKR 532 Query: 467 CHHTLNQYYAAKKQS 481 C + YAA K + Sbjct: 533 CVDDIATAYAAHKDA 547 >gi|238828068|pdb|2VTB|B Chain B, Structure Of Cryptochrome 3 - Dna Complex Length = 525 Score = 157 bits (397), Expect = 4e-36, Method: Compositional matrix adjust. Identities = 127/464 (27%), Positives = 219/464 (47%), Gaps = 46/464 (9%) Query: 6 AMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQH------GISARQSH 59 V ++W RNDLR+ DN ALY A +SD ++ V+ P + A + Sbjct: 39 GKGVTILWFRNDLRVLDNDALYKAWSSSDT-ILPVYCLDPRLFHTTHFFNFPKTGALRGG 97 Query: 60 FIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRR 119 F+ L+ ++K+L ++G+ E L S +F +++ EV Sbjct: 98 FLMECLVDLRKNLMKRGLNLLIRSGK----PEEILPSLAKDFGARTVFAHKETCSEEVDV 153 Query: 120 DKLLE---KRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKAL-----IQNLVQ 171 ++L+ KR+ + + S + + + VYT FRK++ I++ + Sbjct: 154 ERLVNQGLKRVGNSTKLELIWGSTMYHKDDLPFDVFDLPDVYTQFRKSVEAKCSIRSSTR 213 Query: 172 ADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKF----CKEKV 227 L P P++ G V + + P + M +G ++A + R F K+ + Sbjct: 214 IPLSLGPTPSVDDWGDV--PTLEKLGVEPQEVTRGMRFVGGESA-GVGRVFEYFWKKDLL 270 Query: 228 YYYVEQRD-IPAIQGTSQLSPYLSIGVLSPRQCWN---RLKEEFVDLLIKPKSGAFSWLN 283 Y E R+ + +++ SP+L+ G +SPR + R ++E V + + L Sbjct: 271 KVYKETRNGMLGPDYSTKFSPWLAFGCISPRFIYEEVQRYEKERV-----ANNSTYWVLF 325 Query: 284 ELIWREFYRHLMAFYPSVCMGKPFI----PWTEKIEWNKDSHLLQAWKQGYTGFPIIDAA 339 ELIWR+++R L S+ G P +W++D L ++W+ TG+P+IDA Sbjct: 326 ELIWRDYFRFL-----SIKCGNSLFHLGGPRNVNGKWSQDQKLFESWRDAKTGYPLIDAN 380 Query: 340 MRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTG 399 M++L+T G+M NR R I SFLV+D+ +DWR+G E+F + LLD D SN G W + A Sbjct: 381 MKELSTTGFMSNRGRQIVCSFLVRDMGLDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVN 440 Query: 400 NDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAP 443 + R F+ Q + +DP+G ++ WL +L +P + H P Sbjct: 441 DPRED--RYFSIPKQAQNYDPEGEYVAFWLQQLRRLPKEKRHWP 482 >gi|224121408|ref|XP_002330820.1| predicted protein [Populus trichocarpa] gi|222872622|gb|EEF09753.1| predicted protein [Populus trichocarpa] Length = 552 Score = 157 bits (397), Expect = 4e-36, Method: Compositional matrix adjust. Identities = 142/533 (26%), Positives = 233/533 (43%), Gaps = 72/533 (13%) Query: 1 MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHG-------I 53 M +VW RNDLR+ DN+ L+ A NS++ V+ V+ P ++ Sbjct: 28 MVKRNGKGAAIVWFRNDLRVLDNEVLFKAWVNSES-VLPVYCVDPRLFQASTCYFGFPKT 86 Query: 54 SARQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYE 113 + FI L+ ++K+L ++G+ E + + ++ ++ Sbjct: 87 GGLRGQFIVECLVDLKKNLMKRGLNLLIRH----GKPEEIIPALAKDFASHTVYAQKETC 142 Query: 114 INEVRRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQ------MY------------ 155 EV +KL+ K L+ + S S GS + LQ MY Sbjct: 143 SEEVNVEKLVSKALRRVHLPHSTGRST--SQGSANSPTLQLVWGGTMYHLDDLPFSTNSI 200 Query: 156 -KVYTPFRKAL-----IQNLVQADLRSLPVPAIRLTGPVTPS--------NIPRFFDYPF 201 VYT FRK++ I++ + + P P + G V PS F Y Sbjct: 201 PDVYTQFRKSVEARCSIRSCAKISMSLGPAPRVEDWGCV-PSIEQLGLQPQEAGFMFYLH 259 Query: 202 QAIDPMFPIGEQNALH--------------ILRKFCKEKVYYYVEQRD-IPAIQGTSQLS 246 + F GE AL L C + + Y E R+ + +++ S Sbjct: 260 VSKGMRFLGGETAALSRVYEYFWKKASGNCFLLSLCLDFLKIYKETRNGMLGPDYSTKFS 319 Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP 306 P+L+ G LSPR + +K L + + L ELIWR+++R ++F + Sbjct: 320 PWLASGSLSPRFIYEEVKRYEKGRLANDST--YWVLFELIWRDYFR-FISFKYGNSIFHI 376 Query: 307 FIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLL 366 P + W++D L +W+ G TG+P+IDA M++L+ G+M NR R I SFLV+D+ Sbjct: 377 GGPRNVERRWSQDQRLFDSWRNGCTGYPLIDANMKELSATGFMSNRGRQIVCSFLVRDMG 436 Query: 367 VDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIR 426 +DWR+G E+F + LLD D SN G W + A GND R F+ Q + +DP+G ++ Sbjct: 437 IDWRMGAEWFETFLLDYDPCSNYGNWTYGAGVGNDPRED-RYFSIPKQAQTYDPEGEYVA 495 Query: 427 HWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479 +WLP+L +P + + P L + +P+ H ++ AA+K Sbjct: 496 YWLPQLQELPKEKRNFP------GKLYMEQIVPLKFGNPNGHRGQDRASAARK 542 >gi|254438241|ref|ZP_05051735.1| deoxyribodipyrimidine photolyase family [Octadecabacter antarcticus 307] gi|198253687|gb|EDY78001.1| deoxyribodipyrimidine photolyase family [Octadecabacter antarcticus 307] Length = 511 Score = 157 bits (396), Expect = 5e-36, Method: Compositional matrix adjust. Identities = 130/476 (27%), Positives = 213/476 (44%), Gaps = 41/476 (8%) Query: 6 AMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASL 65 A + +VW + DLRI D+ L A S+A +I ++I PE W+Q S R HFI+ L Sbjct: 2 AQTPRIVWFKRDLRINDHGPLLTASQ-SNAPIIPLYIVEPEYWKQPFASRRHWHFIHDCL 60 Query: 66 LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQY-EINEVRRDKLLE 124 + +L++ G + D+ E + L+ V+ ++ + + + +RD +E Sbjct: 61 CDLDSALAEMG----QNLIVKVGDACEVIKELHLEHHVSDVYAHEETGNLWTYKRDIAVE 116 Query: 125 KRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLP-VPAIR 183 K +C + ++ P + + L+ ++ R A + + LP P+ R Sbjct: 117 K------LCLNDGIALHTSPTNGVVRRLRSRDDWSKIRNARMAEKILPKPNMLPSFPSCR 170 Query: 184 LTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQG-- 241 + + N P F D P + G + A+ LR F + Y+ P + Sbjct: 171 -SDVLPAKNGPIFCDIPIGTVQKG---GRKQAVADLRSFLNYRSREYLYHISAPDLSEFH 226 Query: 242 TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSG------AFSWLNELIWREFYRHLM 295 S+LS +L+ G LS R+ + + L K AF + L WR + + Sbjct: 227 CSRLSAHLAWGTLSVREVAQSIIKRRSQLSPDEKKSFGRNLTAFG--SRLAWRCHFVQKI 284 Query: 296 AFYPSV---CMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNR 352 P + CM F E + + D H QAW +G TG+P +DA MR L GW+ R Sbjct: 285 EDQPEIETHCMHPAFEGLRE--DEHNDLHF-QAWARGQTGYPFVDACMRNLTAEGWITFR 341 Query: 353 LRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPT 412 +R + SF L +DWR+ ++ D + + Q +G + R++NP Sbjct: 342 MRAMLVSFASYQLWLDWRVTGDHLARLFTDYEPGIHYS--QLQMQSGVTGINTMRVYNPI 399 Query: 413 IQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSW----LDKNDLSL--NYPLPIVD 462 Q DP G+FIR W+PEL NVP ++IH P W +D D +L +YP PI++ Sbjct: 400 KQSMEHDPSGSFIRKWVPELKNVPDEFIHEPWKWKKTLIDNCDFTLGQDYPEPIIE 455 >gi|134302253|ref|YP_001122222.1| deoxyribodipyrimidine photolyase [Francisella tularensis subsp. tularensis WY96-3418] gi|134050030|gb|ABO47101.1| deoxyribodipyrimidine photolyase [Francisella tularensis subsp. tularensis WY96-3418] Length = 499 Score = 156 bits (395), Expect = 6e-36, Method: Compositional matrix adjust. Identities = 136/487 (27%), Positives = 221/487 (45%), Gaps = 39/487 (8%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 + +VW + DLR+TDN AL A D ++ ++I E W+Q +S RQ F+ L ++ Sbjct: 1 MQIVWFKRDLRVTDNLALSLASEKGD--ILPLYIIELELWQQPDMSHRQYLFLSECLEEL 58 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINE--VRRDKLLEKR 126 L++ G D++E + +Q+ K ++ Q N+ +RD LEK Sbjct: 59 NTELTKLGQSLAIM----LGDAVEIFEQ-LIQKYNIKNVWSHQETWNDWTYQRDIKLEKF 113 Query: 127 LQHRVIC--KSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL 184 + I + + + V+ N AL + + + + +++A + + ++ Sbjct: 114 FKQNNIVWHQPYQNGVVRCLADRDNWAL-------LWHQRMSEKIIRAPTKLKFICENQI 166 Query: 185 TGPVTPSNIPRFFD-YPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIP--AIQG 241 P S + D Y Q G AL IL F ++ Y ++ P A + Sbjct: 167 KIPTAESLGLEYDDCYKRQKG------GRIRALRILDSFLYQRGCGYTKEMSSPVTAFKS 220 Query: 242 TSQLSPYLSIGVLSPRQCW-------NRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHL 294 S+LSPY++ GV+S ++ + N +KE V K S S+L+ L W + Sbjct: 221 CSRLSPYIAFGVISLKEIYQKANQRKNEIKESSVKNKTKWLSAMRSFLSRLRWHCHFMQK 280 Query: 295 MAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLR 354 + PS+ + + + +AWK G TG+P+IDA MR L GW++ R+R Sbjct: 281 LEDQPSIEYENLHSAYDQLRTEPLNQQCFEAWKTGNTGYPMIDACMRALIATGWLNFRMR 340 Query: 355 MITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQ 414 + SF L +DWR+ Y D + + Q +G + RI+NP Q Sbjct: 341 AMLMSFASYHLWLDWRVTSLYLARLFTDYEPGIHYS--QVQMQSGTTGINSIRIYNPIKQ 398 Query: 415 GKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQY 474 DP G FIR WLPEL NV + IH P WL+K++ SL+YP P +D K+A + Sbjct: 399 SIDQDPNGEFIRRWLPELENVSNENIHTP--WLEKHN-SLDYPDPTIDEKQARKFAADNI 455 Query: 475 YAAKKQS 481 Y +K S Sbjct: 456 YKIRKSS 462 >gi|301121222|ref|XP_002908338.1| cryptochrome, putative [Phytophthora infestans T30-4] gi|262103369|gb|EEY61421.1| cryptochrome, putative [Phytophthora infestans T30-4] Length = 568 Score = 156 bits (395), Expect = 6e-36, Method: Compositional matrix adjust. Identities = 157/555 (28%), Positives = 244/555 (43%), Gaps = 107/555 (19%) Query: 11 LVWLRNDLRITDNKALYAACHN-----SDAKVIAVFIATPEQWRQHGISARQSHFIYASL 65 L+W R DLR+ DN AL AA + SD ++I+++I Q + G A + F+ S+ Sbjct: 4 LLWFRRDLRLHDNLALNAALQHIEEAKSDVELISLYIIHRPQIMRCG--ANRFQFVLESV 61 Query: 66 LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDK---L 122 + +L+++G + DSI+ L +T +F++ E V RD Sbjct: 62 ADLSGALAERGSKLVVAK----GDSIQVLRRVLPAWDITHMFFDGVCEPYAVERDDRALA 117 Query: 123 LEKRLQHRV-ICKSF---DDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADL---- 174 L K L + + K + D V+ I +H+ + K Y F KA+ + Sbjct: 118 LAKSLGVQTHVTKGYNLYDLEVV-----IASHSGKAPKTYQRFLKAVGAQPTPREPIPTP 172 Query: 175 RSLPVPAIR-----------------------------------LTGPVTPSNIP--RFF 197 +LP P + + GP +P +F Sbjct: 173 ETLPSPTRKHSELYEQIANYWKDRKLSDEEKEDDLEERERQIDQIAGPEHDFTLPDLTYF 232 Query: 198 DYPFQAIDPMFPIGEQNALHILRKFC--KEKVYYYVEQR----DIPAIQGTSQLSPYLSI 251 Y GEQ AL +L+ +C +++V + + + IP T+ LSPY+ Sbjct: 233 GYETPEKHSFIYGGEQKALEMLKNYCSDQDRVALFEKPKTSPAQIPPTPSTTVLSPYMFY 292 Query: 252 GVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYP--------SVCM 303 G LSPR +++++ K S + +L+WR+FY P S C+ Sbjct: 293 GCLSPRTFYHQVRS-IQRGRKKVSVPPVSLIGQLLWRDFYHCHGRANPYFDKMEESSTCL 351 Query: 304 GKPF----IPWTEKIEWNKDSHL----LQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRM 355 + IP E+ + + D L +AW+ G TGFP IDA M QL GWMH+ R Sbjct: 352 QVNWRYHTIPENEE-DLSDDDKLARSQFEAWRDGRTGFPWIDAIMIQLKEEGWMHHLARH 410 Query: 356 ITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQ 414 A FL + DL + W G E F +L+D D + N G W W +S+ + YFR+++P Sbjct: 411 SVACFLTRGDLYISWVRGLEVFQERLIDHDWSLNAGNWLWLSSSYFFTA-YFRVYSPISF 469 Query: 415 GKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSL----------NYPLPIVDHK 464 GK+ DP+G FI+ ++P L N P +YI+ P W K L+L +YP PI++HK Sbjct: 470 GKKSDPEGLFIKKYIPALKNFPAKYIYEP--W--KAPLTLQHAAGCRIGKDYPTPIIEHK 525 Query: 465 KA---CHHTLNQYYA 476 A C L YA Sbjct: 526 TAMKRCVEGLKMSYA 540 >gi|255574121|ref|XP_002527976.1| DNA photolyase, putative [Ricinus communis] gi|223532602|gb|EEF34388.1| DNA photolyase, putative [Ricinus communis] Length = 578 Score = 156 bits (395), Expect = 6e-36, Method: Compositional matrix adjust. Identities = 139/504 (27%), Positives = 223/504 (44%), Gaps = 78/504 (15%) Query: 1 MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQH------GIS 54 M +VW RNDLRI DN+ L+ A +S+A V+ V+ P ++ Sbjct: 49 MATRHGKGTAIVWFRNDLRILDNEVLFKAWLSSEA-VLPVYCVDPRLFQTTHYFGFPKTG 107 Query: 55 ARQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEI 114 A ++ FI L ++K+L ++G+ E L S ++ +++ Sbjct: 108 ALRAQFIIECLADLKKNLMKRGLNLLIRH----GKPEEVLPSLAQAFAAHTVYAHKETCS 163 Query: 115 NEVRRDKLLEKRLQHRVICKSFDDS---------VLLPPGSILNH--------------- 150 EV +KL+ K L HRV DS + L GS + H Sbjct: 164 EEVHVEKLMNKAL-HRVKLSPPPDSKASANTTPKLQLIWGSTMYHIDDLPFNITSLPDDF 222 Query: 151 ------------ALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFD 198 L M ++ P K +++ ++ P P + G V PS I + Sbjct: 223 FDFRKARIIPFFMLLMLQIVEP--KCAVRSCIKIPKSLAPPPTVEDWGCV-PS-IHQLGL 278 Query: 199 YPFQAIDPMFPIGEQNALHILRKF---------------CKEKVYYYVEQRD-IPAIQGT 242 +A F GE A+ + ++ C + Y E R+ + + + Sbjct: 279 EEQKARGMRFLGGESAAISRVYEYLWKKASGICLLNLHCCSDLAKTYKETRNGLLGLDYS 338 Query: 243 SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVC 302 ++ SP+L+ G LSPR + +K + L + ++ L+WR+ +R F+ C Sbjct: 339 TKFSPWLAQGSLSPRFIYEEVKRYERERLANDSTHRVLFV--LLWRDHFR----FFSIKC 392 Query: 303 MGKPF---IPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITAS 359 F P W++D L ++W+ G TG+P+IDA M++L+ G+M NR RMI S Sbjct: 393 GNSIFHLGGPRNVAQRWSQDQRLFESWRDGRTGYPLIDANMKELSATGFMSNRGRMIVCS 452 Query: 360 FLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFD 419 FLV+D+ VDWR+G E+F + LLD D SN G W + A GND+ R F+ Q + FD Sbjct: 453 FLVRDMGVDWRMGAEWFETCLLDYDPCSNYGNWTYGAGIGNDNRED-RYFSIPKQAQSFD 511 Query: 420 PQGTFIRHWLPELNNVPTQYIHAP 443 P+G ++ +WLPEL + H P Sbjct: 512 PEGEYVAYWLPELRKLQKDKRHFP 535 >gi|162660638|gb|EDQ48467.1| AtPHR2-like type 1 CPD DNA photolyase [Physcomitrella patens subsp. patens] Length = 148 Score = 156 bits (395), Expect = 7e-36, Method: Composition-based stats. Identities = 79/148 (53%), Positives = 96/148 (64%), Gaps = 10/148 (6%) Query: 340 MRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTG 399 MRQLNT G+MHNRLRM+ ASFLVKDL +DWR GE +F QL D DLA+NNGGWQWAASTG Sbjct: 1 MRQLNTTGYMHNRLRMVAASFLVKDLGIDWRRGEAWFARQLNDFDLAANNGGWQWAASTG 60 Query: 400 NDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKN--------D 451 D+ P+FRIFNP Q ++FD FI ++PEL +P HAP W + Sbjct: 61 CDAQPWFRIFNPITQSQKFDADARFIERYVPELARLPAALRHAP--WQARPLELAEAGVV 118 Query: 452 LSLNYPLPIVDHKKACHHTLNQYYAAKK 479 L +YP P+VDH A TL +Y K+ Sbjct: 119 LGKDYPHPVVDHAAARERTLARYGVVKQ 146 >gi|123965634|ref|YP_001010715.1| putative deoxyribodipyrimidine photolyase [Prochlorococcus marinus str. MIT 9515] gi|123200000|gb|ABM71608.1| putative deoxyribodipyrimidine photolyase [Prochlorococcus marinus str. MIT 9515] Length = 503 Score = 156 bits (394), Expect = 7e-36, Method: Compositional matrix adjust. Identities = 131/453 (28%), Positives = 205/453 (45%), Gaps = 52/453 (11%) Query: 8 SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67 +++++W + DLRI DN+AL + + D +I +FI E W Q S RQ F SLL Sbjct: 3 NINILWFKKDLRINDNEALIESLKDRD--IIPIFIIEKEIWSQKTYSDRQWQFCKESLLD 60 Query: 68 VQKSLSQKG---------IVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVR 118 ++ SL+ G ++ + Q SN + E Y Q+ L Y R EVR Sbjct: 61 LRISLANIGQPLIIRTGKVIEIFDQISN---NFEIKAIYSHQETGDYLTYKRD---QEVR 114 Query: 119 RDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLP 178 + ++K +I K + S+ L T ++K + + L + P Sbjct: 115 KWASMKK-----IIWKEY------LQFSVFRGKLDRNNWSTKWKKNMERKLFTEPSKINP 163 Query: 179 VPAIRLTGPVTPSNIP--RFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDI 236 + + P IP FF + G + L + F K+ YY + Sbjct: 164 IE-------IDPGEIPPDNFFCFKDDFCKGRLKGGREIGLKRMEYFFSNKLSYYSKDISS 216 Query: 237 P--AIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHL 294 P + S+LSPY+S G +S ++ ++ + + P S + L W + Sbjct: 217 PEKSFDSCSRLSPYISWGCISIKEIIHK-----ANSITNPNSKMLK--SRLTWHCHFIQK 269 Query: 295 MAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLR 354 + P + K F P+ +KI KDSHLL+ W +G TGFP +DA MR LN GW++ R+R Sbjct: 270 LESEPELEF-KEFHPYFQKIR-KKDSHLLKLWSEGKTGFPFLDACMRSLNFHGWLNFRMR 327 Query: 355 MITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQ 414 + SF +L + W+ S+ LD + + Q A G S+ RI+NP Q Sbjct: 328 AMLMSFASYNLWIPWQESGSELASKFLDYEPGIHWNQCQMQA--GTTSINVNRIYNPIKQ 385 Query: 415 GKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWL 447 GK DP+G FI+ W+PE+ N P ++H P WL Sbjct: 386 GKDHDPKGNFIKKWVPEIQNYPENFVHEP--WL 416 >gi|302795740|ref|XP_002979633.1| hypothetical protein SELMODRAFT_233387 [Selaginella moellendorffii] gi|300152881|gb|EFJ19522.1| hypothetical protein SELMODRAFT_233387 [Selaginella moellendorffii] Length = 527 Score = 156 bits (394), Expect = 8e-36, Method: Compositional matrix adjust. Identities = 151/506 (29%), Positives = 220/506 (43%), Gaps = 56/506 (11%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIA-----TPEQWRQHGISAR----QSHFI 61 L+W R LR+ DN +L AACH S V VF+ P+ SAR + F+ Sbjct: 3 LLWFRKGLRLHDNPSLEAACHGS-RNVYPVFVLDPWFLAPDPRASSPGSARVGINRIQFL 61 Query: 62 YASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSY-----CLQQRVTKLFYNRQYEINE 116 SL + ++LS +G + E LD + C + +R +I E Sbjct: 62 LESLQDLDRNLSSRGSKLLLVHGNPIQVIPELLDKWRIRKLCFEFDTEPYALDRDAKIKE 121 Query: 117 VRRDKLLEKRLQHRVICKSFDDSVLLP------PGSILNHALQMYKVYTPFRKALIQNLV 170 +DK +E L V F+ +L+ P + + + P Sbjct: 122 HAKDKGIE--LHCPVSHTIFNPDLLIAKNGGKAPLTFQSFCKNLVPATKPIGNGPSAIPP 179 Query: 171 QADL---RSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILR-KFCKEK 226 DL + +PVP + G + D+ + P F GE AL L EK Sbjct: 180 TGDLHGIKVVPVPTLEELG---------YADF-HEDFSP-FRGGETVALTRLEDSLANEK 228 Query: 227 -VYYYVEQRDIPAI---QGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWL 282 V + + + P T+ LSPYL G LS R ++R+KE + S S Sbjct: 229 WVCEFEKPKGDPTAFIKPATTVLSPYLKFGCLSSRLVYSRVKEVY-SRAKSFTSPPVSLE 287 Query: 283 NELIWREFYRHLMAFYPSVCMGKPFI-PWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMR 341 +L+WREF+ A Y + K P ++I W D LL AW+ G TG+P IDAAM Sbjct: 288 AQLLWREFF--YTAAYATANFDKMVGNPICKQIPWKDDDELLSAWRDGRTGYPWIDAAMT 345 Query: 342 QLNTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGN 400 QL GWMH+ R A FL + D+ V W G + F L+D D + NNG W W +++ Sbjct: 346 QLRKWGWMHHLARHAVACFLTRGDMFVYWEKGRDVFDRLLIDADWSINNGNWLWLSASAF 405 Query: 401 DSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND--LSLNYPL 458 + Y RI++P K++D QG +I+H+LPE P + AP K + +YP Sbjct: 406 FNQ-YHRIYSPITFAKKYDRQGNYIKHFLPEFIYEPWK---APAEIQRKAKCIIGKDYPT 461 Query: 459 PIVDHKKA---CHHTLNQYYAAKKQS 481 P++DH A C + YA K S Sbjct: 462 PVLDHAAASKICRERMGAAYALSKSS 487 >gi|167626681|ref|YP_001677181.1| deoxyribodipyrimidine photo-lyase [Francisella philomiragia subsp. philomiragia ATCC 25017] gi|167596682|gb|ABZ86680.1| Deoxyribodipyrimidine photo-lyase [Francisella philomiragia subsp. philomiragia ATCC 25017] Length = 499 Score = 156 bits (394), Expect = 8e-36, Method: Compositional matrix adjust. Identities = 136/485 (28%), Positives = 220/485 (45%), Gaps = 35/485 (7%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 + +VW + DLRI DN AL A D V+ ++I PE W+Q +S RQ F+ L ++ Sbjct: 1 MQVVWFKRDLRIYDNLALTQAATKGD--VLPIYIIEPELWQQPDMSHRQYLFLSECLEEL 58 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEIN-EVRRDKLLEKRL 127 L++ G D++E + Q + ++ +++ N +RD LEK Sbjct: 59 NTELTRLGQPL----ILMIGDAVEVFEQLIQQYPINSVWSHQETWNNWTYQRDIKLEKFF 114 Query: 128 QHRVICKSFDDSVLLPP--GSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185 + I V P ++ H K + K + + +V+A L T Sbjct: 115 KQNNI-------VWHQPYQNGVVRHLADRDKWALVWHKRVSEKIVEAP-NKLKFICENQT 166 Query: 186 GPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIP--AIQGTS 243 T +I +D ++ G AL IL F ++ Y ++ P A + S Sbjct: 167 KIPTAESIGLEYDNCYKRQKG----GRVRALRILDSFLYQRGCGYTKEMSSPVTAFKSCS 222 Query: 244 QLSPYLSIGVLSPRQCW---NRLKEEFVDLLIKPK----SGAFSWLNELIWREFYRHLMA 296 +LSPY++ G +S R+ + N+ K+E IK K S S+L+ L W + + Sbjct: 223 RLSPYIAFGAISIREVYQLANQRKKEIKVSSIKNKTKWLSAMRSFLSRLRWHCHFMQKLE 282 Query: 297 FYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMI 356 PS+ + + + + +AWK G TG+P+IDA MR L GW++ R+R + Sbjct: 283 DQPSIEYENLHSAYDQLRKEPINQQYFEAWKTGNTGYPMIDACMRALIATGWLNFRMRAM 342 Query: 357 TASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGK 416 SF L +DWR+ Y D + + Q +G + RI+NP Q Sbjct: 343 LMSFASYHLWLDWRVTSIYLARLFTDYEPGIHYS--QVQMQSGTTGINSIRIYNPIKQSI 400 Query: 417 RFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYA 476 DP G FI+ W+PEL NV + IH P WL+K++ +++YP PI+D K+A + Y Sbjct: 401 DQDPNGEFIKRWIPELENVSNENIHTP--WLEKHN-AVDYPDPIIDEKQARKFAADNIYK 457 Query: 477 AKKQS 481 +K S Sbjct: 458 IRKDS 462 >gi|145881071|gb|ABP97099.1| cryptochrome CRY2 [Acropora millepora] Length = 520 Score = 156 bits (394), Expect = 9e-36, Method: Compositional matrix adjust. Identities = 141/500 (28%), Positives = 219/500 (43%), Gaps = 74/500 (14%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 L W R DLR+ DN +L NS V+ P + +Q +S + F+ SL + Sbjct: 21 LHWFRKDLRLHDNPSLRECLRNSKV-FYGVYFLPPSEAKQGSVSLNRWGFLLESLRDLDT 79 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130 SL + G + + +E L + + + ++ + E RD ++ Sbjct: 80 SLVECGSRLFVIR----GNPVEMLPNLFKKWNINQMSFEVDSEPYSNSRDLVISH----- 130 Query: 131 VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALI--------QNLVQADLRSLPVPAI 182 + K V+ S ++H L ++ ++ ++++Q PVP + Sbjct: 131 -LAKENGIEVI----SRVSHTLYDPRILRGLSSGIVPLLFDEFKESVLQKRQPEKPVPKV 185 Query: 183 --RLTGP-VTPSN--------IPRF------FDYPFQAIDPMFPIGEQNALHILRKFCKE 225 +L G VTP +PR F ++ GE AL + + Sbjct: 186 GRKLFGACVTPVGSDHQQCYGVPRLDEIGGKFSKSGSVCSELYKGGESEALKRMETALQW 245 Query: 226 KVYYYVEQRDIPA---IQGTSQLSPYLSIGVLSPRQCWNRLKEEFV-DLLIKPKSGAFSW 281 V + +I + + LSPYL G LSPR R+ EE++ + P S F Sbjct: 246 MVKNDFTEPEITIHSLLXSATHLSPYLRCGCLSPRLLHQRITEEYIKSKGVSPPSELFV- 304 Query: 282 LNELIWREFYRHLMAFYPSV--CMGKPF---IPWTEKIEWNKDSHLLQAWKQGYTGFPII 336 +L+WREF+ + P + P IPW + +E+ L+ WK+G TGFP I Sbjct: 305 --KLLWREFFFVVGGQIPDAHEMINNPISLEIPWEDSVEY------LERWKKGTTGFPWI 356 Query: 337 DAAMRQLNTIGWMHNRLRMITASFLVKDLL-VDWRIGEEYFMSQLLDGDLASNNGGWQWA 395 DA MRQL T GW+HN R ASFL + L V+W G + F LD + + N G W W Sbjct: 357 DAIMRQLRTEGWIHNIARRAVASFLTRGCLWVNWEEGFKVFDEFQLDAERSLNVGNWLWV 416 Query: 396 ASTG--NDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDL- 452 +++ VP+ F P GK+ DP G ++R ++PE+ N+PT+YI P WL DL Sbjct: 417 STSTFVKGPVPW---FCPVGVGKKIDPTGEYVRKYVPEIRNLPTEYIFEP--WLTPRDLQ 471 Query: 453 -------SLNYPLPIVDHKK 465 +YP PIV+H K Sbjct: 472 RSYGCVIGRDYPAPIVNHVK 491 >gi|187931260|ref|YP_001891244.1| deoxyribodipyrimidine photolyase [Francisella tularensis subsp. mediasiatica FSC147] gi|187712169|gb|ACD30466.1| deoxyribodipyrimidine photolyase [Francisella tularensis subsp. mediasiatica FSC147] Length = 499 Score = 155 bits (393), Expect = 9e-36, Method: Compositional matrix adjust. Identities = 135/487 (27%), Positives = 220/487 (45%), Gaps = 39/487 (8%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 + +VW + DLR+TDN AL A D ++ ++I PE W+Q +S RQ F+ L ++ Sbjct: 1 MQIVWFKRDLRVTDNLALSLASEKGD--ILQLYIIEPELWQQPDMSHRQYLFLSECLEEL 58 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINE--VRRDKLLEKR 126 L++ G D++E + +Q+ K ++ Q N+ +RD LEK Sbjct: 59 NTELTKLGQSLAIM----LGDAVEIFEQ-LIQKYNIKNVWSHQETWNDWTYQRDIKLEKF 113 Query: 127 LQHRVIC--KSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL 184 + I + + + V+ N AL + + + + +++A + + ++ Sbjct: 114 FKQNNIVWHQPYQNGVVRCLADRDNWAL-------LWHQRMSEKIIRAPTKLKFICENQI 166 Query: 185 TGPVTPSNIPRFFD-YPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIP--AIQG 241 P S + D Y Q G AL IL F ++ Y ++ P A + Sbjct: 167 KIPTAESLGLEYDDCYKRQKG------GRIRALRILDSFLYQRGCGYTKEMSSPVTAFKS 220 Query: 242 TSQLSPYLSIGVLSPRQCW-------NRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHL 294 S+LSPY++ G +S ++ + N +KE V K S S+L+ L W + Sbjct: 221 CSRLSPYIAFGAISLKEIYQKANQRKNEIKESSVKNKTKWLSAMRSFLSRLRWHCHFMQK 280 Query: 295 MAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLR 354 + PS+ + + + +AWK TG+P+IDA MR L GW++ R+R Sbjct: 281 LEDQPSIEYENLHSAYDQLRTEPLNQQCFEAWKTDNTGYPMIDACMRALIATGWLNFRMR 340 Query: 355 MITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQ 414 + SF L +DWR+ Y D + + Q +G + RI+NP Q Sbjct: 341 AMLMSFASYHLWLDWRVTSLYLARLFTDYEPGIHYS--QVQMQSGTTGINSIRIYNPIKQ 398 Query: 415 GKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQY 474 DP G FIR WLPEL NV + IH P WL+K++ SL+YP P +D K+A + Sbjct: 399 SIDQDPNGEFIRRWLPELENVSNENIHTP--WLEKHN-SLDYPDPTIDEKQARKFAADNI 455 Query: 475 YAAKKQS 481 Y +K S Sbjct: 456 YKIRKSS 462 >gi|326500588|dbj|BAK06380.1| predicted protein [Hordeum vulgare subsp. vulgare] Length = 592 Score = 155 bits (393), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 140/498 (28%), Positives = 225/498 (45%), Gaps = 77/498 (15%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPE-------QWRQHGISARQSHFI 61 V +VW R+DLR+ DN+AL A S A V+ V+ P ++ A ++ F+ Sbjct: 97 VSVVWFRSDLRVLDNEALARAWAASGA-VLPVYCVDPRVLAGATHRFGFPKTGALRAQFL 155 Query: 62 YASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDK 121 L ++++L ++G+ D L + + + Y E ++ Sbjct: 156 IECLGDLKQNLQKRGLDLLVRHGKPED---------ILPEIAKAVSAHTVYAHKETCSEE 206 Query: 122 LLEKRLQHRVICKSFDDSVLLPPGSILNHALQ----------MY-------------KVY 158 LL + L R + K V++P G N +L MY VY Sbjct: 207 LLVEHLVRRGLEK-----VIIPQGGASNKSLSPKLQLIWGATMYHIDDLPFPVSNLPDVY 261 Query: 159 TPFRKALIQNLVQADLRSLPVPAIRLTGPVTPS---------NIPRFFDYPFQAIDP--- 206 T FRKA+ LP P++ GP S +IP Sbjct: 262 TQFRKAVESKSSVRSCSKLP-PSL---GPAPSSGLDEIGGWGSIPTLESLGLSVTKSEKG 317 Query: 207 -MFPIGEQNALHILRKFC--KEKVYYYVEQRD-IPAIQGTSQLSPYLSIGVLSPRQCWNR 262 F GE AL + ++ +++ Y E R+ + +++ SP+L+ G LSPR Sbjct: 318 MRFVGGESAALGRVHEYFWKNDQLKVYKETRNGMLGPDYSTKFSPWLASGSLSPRYVCEE 377 Query: 263 LKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVC--MGKPFIPWTEKI--EWNK 318 ++ + + + L ELIWR+++R L Y + +G P K+ +W++ Sbjct: 378 VRRYEKQRVANDST--YWVLFELIWRDYFRFLSEKYGNSIFHLGGP-----RKVASKWSQ 430 Query: 319 DSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMS 378 D L ++WK G TG+P+IDA M++L G+M NR R I SFLV+D+ +DWR+G E+F + Sbjct: 431 DQALFESWKDGRTGYPLIDANMKELLATGFMSNRGRQIVCSFLVRDMGIDWRMGAEWFET 490 Query: 379 QLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQ 438 LLD D ASN G W + A GND R F+ Q K +DP G ++ +WLPEL ++ + Sbjct: 491 CLLDYDPASNYGNWTYGAGVGNDPRED-RYFSIPKQAKTYDPDGEYVAYWLPELRSLAKE 549 Query: 439 YIHAPHSWLDKNDLSLNY 456 + P + K + L + Sbjct: 550 RRNFPGASYIKQVVPLKF 567 >gi|167521638|ref|XP_001745157.1| hypothetical protein [Monosiga brevicollis MX1] gi|163776115|gb|EDQ89735.1| predicted protein [Monosiga brevicollis MX1] Length = 525 Score = 155 bits (392), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 138/490 (28%), Positives = 217/490 (44%), Gaps = 56/490 (11%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQW--------RQHG----ISARQS 58 +VW RNDLR+ DN+ L A S V+ V+ Q+ R+ G ++ Sbjct: 11 VVWFRNDLRVHDNEVLLQAAKASHNHVVPVYCFDIRQYSLVITHRSRRCGQFPKCGRPRA 70 Query: 59 HFIYASLLQVQKSLSQ--KGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINE 116 F+ S+ ++ L + G+V + E + Q T++F +++ E Sbjct: 71 RFLIESVDDLRTRLQELGSGLVVRTGLPE------EEVARVAAQVGATQVFAHQEVCSEE 124 Query: 117 VRRDKLLEKRLQ-------HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKAL---- 165 V + L+++L+ V DD P + V+T FRK + Sbjct: 125 VAAEHRLKRQLEVPLSLHWGAVTLCHLDDLDFGP------RCKHLPSVFTQFRKRVEADM 178 Query: 166 -IQNLVQADLRSLPVPAIRLTG--PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKF 222 ++ +V A R P+P+ G P P + +A+ P F GE A L+ + Sbjct: 179 HVRPVVAAPARLAPLPSDLELGSIPTVEDLCPGQHEPDERAVLP-FKGGETAARARLQYY 237 Query: 223 CKEK---VYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAF 279 E Y + + +S+ SP+L+ G L+ R ++ +K + + ++ + Sbjct: 238 LWESNLLASYKDTRNGLVGGDYSSKFSPWLAHGNLTARWIYHEVKRYEQE---RTENTST 294 Query: 280 SWL-NELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDA 338 WL EL+WR+++R +A + KP + + W +AW+ G TGFP IDA Sbjct: 295 YWLIFELLWRDYFR-FVALQHGTAIFKPGGVQHKDVPWRHSPADFEAWQNGQTGFPFIDA 353 Query: 339 AMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAAST 398 MR+L G+M NR R ASFL KDL +DWR+G E+F + LLD D SN G W +AA Sbjct: 354 NMRELAKTGFMSNRGRQNVASFLTKDLQIDWRLGAEWFETLLLDHDPCSNYGNWNYAAGV 413 Query: 399 GNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKN------DL 452 GND R FN Q K +DP ++ W+PEL + H P + L Sbjct: 414 GNDPR-QGRHFNVIKQAKTYDPTAEYVHLWVPELRGLDAPQAHVPFKLSSEELAQANIQL 472 Query: 453 SLNYPLPIVD 462 YP P+VD Sbjct: 473 GSTYPRPVVD 482 >gi|323454932|gb|EGB10801.1| hypothetical protein AURANDRAFT_77923 [Aureococcus anophagefferens] Length = 526 Score = 155 bits (391), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 138/490 (28%), Positives = 210/490 (42%), Gaps = 49/490 (10%) Query: 3 ATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFI---------ATPEQWRQHGI 53 A TA +VWLR++LR+ DN AL A V+ V++ AT E Sbjct: 5 AATAKPTTIVWLRDELRVHDN-ALLAEAAARGGPVLPVYVLDDRVFDAAATSESGGSRKC 63 Query: 54 SARQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYE 113 A+++ F +L ++ +L +G + D L C Sbjct: 64 GAKRARFTLEALDDLRATLGARGSGLVVERGRPAD----VLAGLCAAVGGDATVLCSDAA 119 Query: 114 INEVRRDKLLEKRLQHRVICKSFDDSVLLPP---GSILNHALQMYKVYTPFRKALIQNLV 170 +E R+D+ ++ + K ++ ++ P G + ++ ++ V Sbjct: 120 CSEERKDEAAVAKVAP--LAKVWEGTLYHPEDLRGVAFHDLFTAWRTKVEKAGTRVRGDV 177 Query: 171 QADLRSLPVPAI----RLTGPVTPSNIPRFFDYPFQAIDPMFPI-----GEQNALHILRK 221 +LP P +L P+ P+ +D A D GE AL LRK Sbjct: 178 FPKAATLPAPPAGVDAKLAAPL-PTLDALGYDAADAACDGRGDFFAPAGGETAALARLRK 236 Query: 222 --FCKEKVYYYVEQRDIPAIQG-TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGA 278 F ++++ Y RD QG +++L+P+LS G +SPR + IK KS Sbjct: 237 YVFEEDRLKDYFNTRDGMIGQGYSTKLAPWLSRGCVSPRAVARACADYERTRGIKNKS-T 295 Query: 279 FSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKI----EWNKDSHLLQAWKQGYTGFP 334 + + EL WR+++ FY K F P+ K W D L+ WK G TG P Sbjct: 296 YWVVFELTWRDYF----VFYAQKYGSKLFRPYGVKDIRERTWRADPEALRRWKAGETGAP 351 Query: 335 IIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQW 394 ++DA MR+L G+M NR R AS+LV DL +DWR+G E+F L+D +N G W Sbjct: 352 LVDANMRELAATGFMSNRGRQNVASYLVLDLGLDWRLGAEHFEEHLVDYTPEANWGNWHA 411 Query: 395 AASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSL 454 AA V F I Q K +DP+G +++ W+PEL VP P S L K D Sbjct: 412 AAGLSGGRVNRFNILK---QSKDYDPKGDYVKLWIPELAKVPAPQCFTPSS-LSKADREA 467 Query: 455 ----NYPLPI 460 +YP P+ Sbjct: 468 AGAGDYPAPL 477 >gi|326933621|ref|XP_003212899.1| PREDICTED: cryptochrome-1-like [Meleagris gallopavo] Length = 530 Score = 155 bits (391), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 140/509 (27%), Positives = 223/509 (43%), Gaps = 76/509 (14%) Query: 8 SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67 ++HL R LR+ DN AL AA +S+ + I A + HF+ SL Sbjct: 5 TIHL--FRKGLRLHDNPALLAALQSSEVVYPVYILDRAFMTSSMHIGALRWHFLLQSLED 62 Query: 68 VQKSLSQKG---IVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLE 124 ++ SL Q G +V Q + D ++ ++ I +V D +E Sbjct: 63 LRSSLCQLGSCLLVIQGEYDAVVRDHVQ------------------KWNITQVTLDAEME 104 Query: 125 ---KRLQHRVICKSFDDSVLLPPGSILNHALQ---------------MYKVYTPFRKAL- 165 K ++ + ++ + + S++ H+L YK + L Sbjct: 105 PFYKEMEANI--RALGEELGFEVLSLMGHSLYNTQRILELNGGTPPLTYKRFLHILSLLG 162 Query: 166 -----IQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILR 220 I+NL D + P + L +P P ++I P + GE L L Sbjct: 163 DPEMPIRNLTAEDFQRCSPPELCL-AECYRVPLPTDLKIPPESISP-WRGGESEGLQRLE 220 Query: 221 KFCKEK---VYYYVEQRDIP--AIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPK 275 + ++ V + + + +P + T+ LSPY S+G LS R + RL ++ + K Sbjct: 221 QHLADRSGWVASFTKPKTVPNSLLPSTTGLSPYFSMGCLSVRSFFYRLS----NIYAQAK 276 Query: 276 SGAF---SWLNELIWREFYRHLMAFYPSVC--MGKPFIPWTEKIEWNKDSHLLQAWKQGY 330 + S +L+WREF+ + + P+ G P +I W +D+ L WK Sbjct: 277 HHSLPPVSLQGQLLWREFFYTVASATPNFTKMAGNPIC---LQIRWYEDAERLHRWKTAQ 333 Query: 331 TGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNN 389 TGFP IDA M QL GW+H+ R A FL + DL + W G + F LLD D + N Sbjct: 334 TGFPWIDAIMTQLRQEGWIHHLARHAAACFLTRGDLWISWEEGMKVFEELLLDADYSINA 393 Query: 390 GGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDK 449 G W W +++ Y RIF P G+R DP+G +IR +LP L N P++YI+ P + ++ Sbjct: 394 GNWMWLSASAFFH-HYTRIFCPVRFGRRTDPEGQYIRKYLPILKNFPSKYIYEPWTASEE 452 Query: 450 ND------LSLNYPLPIVDHKKACHHTLN 472 + +YP P+VDHK+A H L Sbjct: 453 EQKQAGCIIGRDYPFPMVDHKEASDHNLQ 481 >gi|88802284|ref|ZP_01117811.1| probable bacterial cryptochrome [Polaribacter irgensii 23-P] gi|88781142|gb|EAR12320.1| probable bacterial cryptochrome [Polaribacter irgensii 23-P] Length = 436 Score = 155 bits (391), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 121/435 (27%), Positives = 204/435 (46%), Gaps = 25/435 (5%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWR------QHGISARQSHFIYAS 64 ++W RN+LR+ DN++L A N +KVIAV+ P+ ++ Q S R + F+ + Sbjct: 10 VIWFRNNLRVQDNQSLTKAIENH-SKVIAVYFFDPKLFKIDSFGFQKTASFR-TKFLIET 67 Query: 65 LLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLE 124 + ++K+L+ I + S + + + C + V ++ +++ E+ D ++ Sbjct: 68 ITDLKKNLAALNITLLTYMESPENK----MHTLCDEFSVGTIYTQKEWTREEIATDNFIK 123 Query: 125 KRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLV---QADLRSLPVPA 181 L V + D L P ++ ++ V+T FRK + + + + + L Sbjct: 124 STLPETVRFVADYDQFLYHPDAVSRDFSKIPDVFTIFRKKVEKTVAVEKECTVTKLSERN 183 Query: 182 IRLTGPVTPSNIPRFFDYPFQAIDPMFPI--GEQNALHILRK--FCKEKVYYYVEQRD-I 236 + T PS F FP GE AL L+ F +KV +Y R+ + Sbjct: 184 LIETETAIPSMESLGFSDTKTHAKTAFPFKGGETAALERLQYYFFESKKVSFYKNTRNGL 243 Query: 237 PAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMA 296 +++ SP+L+ G LS + + ++KE + + + ELIWR++++++ Sbjct: 244 VGTDYSTKFSPWLANGSLSAKTIYWKIKE--YEAEFGSNQSTYWVIFELIWRDYFKYISL 301 Query: 297 FYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMI 356 Y + I + EWN D +Q W G T ++A M +L G+M NR R Sbjct: 302 KYNAKVFRIGGIL-EKTYEWNTDQKTVQQWINGETKDAFVNANMIELKETGFMSNRGRQN 360 Query: 357 TASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGK 416 AS+ KDLL+DWRIG YF S LLD D+ SN G W + A GND P R FN +Q Sbjct: 361 VASYFAKDLLLDWRIGAAYFESVLLDYDVHSNYGNWMYVAGVGND--PRDRKFNTKMQAD 418 Query: 417 RFDPQGTFIRHWLPE 431 R+D + + WL + Sbjct: 419 RYDQNHKYRKLWLEK 433 >gi|23954322|emb|CAC82537.1| Cryptochrome 2 [Oryza sativa Indica Group] Length = 433 Score = 154 bits (390), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 89/255 (34%), Positives = 138/255 (54%), Gaps = 11/255 (4%) Query: 218 ILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSG 277 +L +F + Y + TS LSPYL G +S R+ + ++ + + + S Sbjct: 2 MLEEFVSHGLLEYSKHGMKVEGATTSLLSPYLHFGEVSVRKVYQLVRMQQIKWENEGTSE 61 Query: 278 AFS----WLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGF 333 A ++ + RE+ R+L +P K + + W D ++W+QG TG+ Sbjct: 62 AEESIHFFMRSIGLREYSRYLCFNFP-FTHEKSLLGNLKHYPWKVDEERFKSWRQGMTGY 120 Query: 334 PIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQ 393 P++DA MR+L GW HNR+R+I +SF VK LL+ W G +YF LLD DL S+ GWQ Sbjct: 121 PLVDAGMRELWATGWTHNRIRVIISSFAVKFLLIPWTWGMKYFWDVLLDADLESDILGWQ 180 Query: 394 WAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIH----APHSWLDK 449 + + + D R+ NP +QG+++DP G ++R W+PEL +PT++IH AP L+ Sbjct: 181 YISGSLPDGHELSRLDNPEVQGQKYDPDGVYVRTWIPELARMPTEWIHHPWDAPSCILEV 240 Query: 450 N--DLSLNYPLPIVD 462 +L NYP PIVD Sbjct: 241 AGVELGFNYPKPIVD 255 >gi|317419959|emb|CBN81995.1| Cryptochrome DASH [Dicentrarchus labrax] Length = 521 Score = 154 bits (390), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 135/482 (28%), Positives = 220/482 (45%), Gaps = 53/482 (10%) Query: 14 LRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQH------GISARQSHFIYASLLQ 67 LRNDLR DN+ + A N++ ++ ++ P + + F+ S+ Sbjct: 11 LRNDLRFQDNELFHWAQRNAEY-IVPLYCFDPRHYVGTYNYNLPKTGPFRLRFLLDSIRD 69 Query: 68 VQKSLSQKG---IVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLE 124 ++ +L KG +V Q D I+ L S V+ + ++ + E+ +K ++ Sbjct: 70 LRNTLLSKGSNLVVRQGKPEEVVADLIKQLGS------VSAVAFHEEVTSEELNVEKGVK 123 Query: 125 KRLQHRVICKSFDDSVLLPPGSIL--------NHALQMYKVYTPFRKALIQNLVQADLRS 176 +C V GS L +H ++ VYT FRKA+ + Sbjct: 124 D------VCAQMKVKVHTCWGSTLYHRDDLPFHHISRLPDVYTQFRKAVETQSRVRPVFP 177 Query: 177 LPVPAIRLTGPVTPSNIPRFFDYPFQAIDPM------FPI--GEQNALHILRKFC--KEK 226 P L + IP D Q +P+ FP GE L L+ + + Sbjct: 178 TPEQLKPLPSGLEEGAIPTAED--LQQTEPLTDPRSAFPCSGGESQVLARLKHYFWDTDA 235 Query: 227 VYYYVEQRD-IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNEL 285 V Y E R+ + + +++ +P+L++G +SPR ++++K+ + + + EL Sbjct: 236 VATYKETRNGLIGVDYSTKFAPWLAMGCISPRYIYHQIKQ--YEKERTANQSTYWVIFEL 293 Query: 286 IWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNT 345 +WR++++ + Y + + + I W KD L AWK+G TG P +DA MR+L Sbjct: 294 LWRDYFKFVGVKYGNRLFQVKGLQ-DKSIPWKKDMKLFNAWKEGQTGVPFVDANMRELAM 352 Query: 346 IGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPY 405 G+M NR R ASFL KDL +DWR+G E+F L+D D+ SN G W ++A GND Sbjct: 353 TGFMSNRGRQNVASFLTKDLGLDWRMGAEWFEYLLIDHDVCSNYGNWLYSAGIGNDPREN 412 Query: 406 FRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAP----HSWLDKNDLSLN--YPLP 459 R FN QG +D G ++R W+PEL + +H P + L +SL YP P Sbjct: 413 -RKFNMIKQGLDYDSNGDYVRQWVPELQGIKGADVHTPWTLSTAALSHAHVSLGETYPNP 471 Query: 460 IV 461 IV Sbjct: 472 IV 473 >gi|223647614|gb|ACN10565.1| Cryptochrome-1 [Salmo salar] Length = 523 Score = 154 bits (389), Expect = 3e-35, Method: Compositional matrix adjust. Identities = 141/495 (28%), Positives = 218/495 (44%), Gaps = 46/495 (9%) Query: 13 WLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQKSL 72 W R LR+ DN AL AA + ++ VF+ P I + F+ +L + SL Sbjct: 8 WFRKGLRLHDNPALVAALRDC-KEIYPVFVLDPYSPNNVNIGINRWKFLIGALKDLDCSL 66 Query: 73 SQ-KGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHRV 131 + +F ++ E + +VT+L Y E +RRDK + + + Sbjct: 67 RKLNSRLFVVRGKTD-----EVFPKLFQKWKVTRLTYEYDTEPFSLRRDKEVGRLAEEHG 121 Query: 132 ICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQA---DLRSLPVPAIRLTGPV 188 + + S L ++ ++ P +Q LV + R +P P V Sbjct: 122 VEIIYKVSHTL---YNIDRIIEENNGKAPLTYNRLQTLVSSIGPPKRPIPAPTCDDMKDV 178 Query: 189 -TP-----------SNIPRFFDYPFQAIDPMFPIGEQNALHILRKFC--KEKVYYYVEQR 234 TP S + + + P + +FP GEQ AL L + KE V + + + Sbjct: 179 KTPCSEKHEENYGISTLEKLYQDPESLTEELFPGGEQEALRRLDQHMARKEWVCGFEKPQ 238 Query: 235 DIPA--IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYR 292 P T+ LSPY++ G LS R W L + + K S +L+WREF+ Sbjct: 239 TSPNSLSPSTTVLSPYMTFGCLSARTFWWSLTDVYQGK--KHSQPPVSLHGQLLWREFFY 296 Query: 293 HLMAFYPSV--CMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMH 350 P+ G P +++W+ + L AW + TGFP IDA M QL GW+H Sbjct: 297 TAGLGIPNFDKMEGNPVC---TQVDWDSNFEYLAAWAEARTGFPFIDAIMTQLRQEGWIH 353 Query: 351 NRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQW-AASTGNDSVPYFRI 408 + R A FL + DL + W G++ F LLDGD + N G WQW +AST +FR+ Sbjct: 354 HLARHAVACFLTRGDLWISWEEGQKVFEELLLDGDWSLNAGNWQWLSASTFFHQ--FFRV 411 Query: 409 FNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIH----APHSWLDKND--LSLNYPLPIVD 462 ++P GK+ D G +I+ +LP L P QYI+ AP S + + +YP PIV+ Sbjct: 412 YSPIAFGKKTDKNGDYIKKYLPHLKKYPAQYIYEPWKAPRSVQEAAGCIVGKDYPRPIVE 471 Query: 463 HKKACHHTLNQYYAA 477 H+ + + AA Sbjct: 472 HEVISKKNIQRMKAA 486 >gi|110626125|ref|NP_001034685.1| cryptochrome 4 [Gallus gallus] gi|34500076|gb|AAQ73619.1| cryptochrome-like protein [Gallus gallus] Length = 529 Score = 154 bits (388), Expect = 4e-35, Method: Compositional matrix adjust. Identities = 140/516 (27%), Positives = 225/516 (43%), Gaps = 75/516 (14%) Query: 8 SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67 ++HL R LR+ DN AL AA +S+ + I A + HF+ SL Sbjct: 5 TIHL--FRKGLRLHDNPALLAALQSSEVVYPVYILDRAFMTSSMHIGALRWHFLLQSLED 62 Query: 68 VQKSLSQKG---IVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLE 124 ++ SL Q G +V Q S D ++ ++ I +V D +E Sbjct: 63 LRSSLRQLGSCLLVIQGEYESVVRDHVQ------------------KWNITQVTLDAEME 104 Query: 125 ---KRLQHRVICKSFDDSVLLPPGSILNHALQMYK------------VYTPFRKAL---- 165 K ++ + + + + S++ H+L + Y F + L Sbjct: 105 PFYKEMEANI--RGLGEELGFQVLSLMGHSLYNTQRILELNGGTPPLTYKRFLRILSLLG 162 Query: 166 -----IQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILR 220 ++N D + P + L +P P ++I P + GE L L Sbjct: 163 DPEVPVRNPTAEDFQRCSPPELGL-AECYGVPLPTDLKIPPESISP-WRGGESEGLQRLE 220 Query: 221 KFCKEK--VYYYVEQRDIP--AIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKS 276 + ++ V + + + +P + T+ LSPY S G LS R + RL ++ + K Sbjct: 221 QHLADQGWVASFTKPKTVPNSLLPSTTGLSPYFSTGCLSVRSFFYRLS----NIYAQAKH 276 Query: 277 GAF---SWLNELIWREFYRHLMAFYPSVC--MGKPFIPWTEKIEWNKDSHLLQAWKQGYT 331 + S +L+WREF+ + + P+ G P +I W +D+ L WK T Sbjct: 277 HSLPPVSLQGQLLWREFFYTVASATPNFTKMAGNPIC---LQIRWYEDAERLHKWKTAQT 333 Query: 332 GFPIIDAAMRQLNTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNG 390 GFP IDA M QL GW+H+ R A FL + DL + W G + F LLD D + N G Sbjct: 334 GFPWIDAIMTQLRQEGWIHHLARHAAACFLTRGDLWISWEEGMKVFEELLLDADYSINAG 393 Query: 391 GWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKN 450 W W +++ Y RIF P G+R DP+G +IR +LP L N P++YI+ P + ++ Sbjct: 394 NWMWLSASAFFH-HYTRIFCPVRFGRRTDPEGQYIRKYLPILKNFPSKYIYEPWTASEEE 452 Query: 451 D------LSLNYPLPIVDHKKACHHTLNQYYAAKKQ 480 + +YP P+VDHK+A H L A+++ Sbjct: 453 QKQAGCIIGRDYPFPMVDHKEASDHNLQLMKQAREE 488 >gi|241667256|ref|ZP_04754834.1| deoxyribodipyrimidine photolyase [Francisella philomiragia subsp. philomiragia ATCC 25015] gi|254875807|ref|ZP_05248517.1| deoxyribodipyrimidine photolyase [Francisella philomiragia subsp. philomiragia ATCC 25015] gi|254841828|gb|EET20242.1| deoxyribodipyrimidine photolyase [Francisella philomiragia subsp. philomiragia ATCC 25015] Length = 499 Score = 154 bits (388), Expect = 4e-35, Method: Compositional matrix adjust. Identities = 135/487 (27%), Positives = 222/487 (45%), Gaps = 39/487 (8%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 + +VW + DLRI DN AL A D V+ ++I P+ W+Q +S RQ F+ L ++ Sbjct: 1 MQVVWFKRDLRINDNLALSLASEKED--VLPLYIIEPKLWQQPDMSHRQYLFLSECLEEL 58 Query: 69 QKSLSQKG--IVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEIN-EVRRDKLLEK 125 L++ G ++ D++E + Q + ++ +++ N +RD LEK Sbjct: 59 NTELTRLGQPLILM------IGDAVEVFEQLIQQYPINSVWSHQETWNNWTYQRDIKLEK 112 Query: 126 RLQHRVIC--KSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIR 183 + I + + + V+ AL + K + + +V+A L Sbjct: 113 FFKQNNIVWHQPYQNGVVRCLADRDKWAL-------VWHKRMSEKIVEAP-NKLKFICEN 164 Query: 184 LTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIP--AIQG 241 T T +I +D ++ G AL IL F ++ Y ++ P A + Sbjct: 165 QTKIPTAESIGLEYDNCYKRQKG----GRVRALRILDSFLYQRGCGYTKEMSSPVTAFKS 220 Query: 242 TSQLSPYLSIGVLSPRQCW---NRLKEEFVDLLIKPK----SGAFSWLNELIWREFYRHL 294 S+LSPY++ GV+S ++ + N+ K E IK K S S+L+ L W + Sbjct: 221 CSRLSPYMAFGVISIKEVYQLANQRKNEIKASSIKNKTKWLSAMRSFLSRLRWHCHFMQK 280 Query: 295 MAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLR 354 + P++ + + + +AWK G TG+P+IDA MR L GW++ R+R Sbjct: 281 LEDQPNIEYENLHSAYDQLRTEPLNQQYFEAWKTGNTGYPMIDACMRALIATGWLNFRMR 340 Query: 355 MITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQ 414 + SF L +DWR+ Y D + + Q +G + RI+NP Q Sbjct: 341 AMLMSFASYHLWLDWRVTSLYLARLFTDYEPGIHYS--QVQMQSGTTGINSIRIYNPIKQ 398 Query: 415 GKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQY 474 DP G FIR WLPEL NV + IH P WL+K++ +++YP PI+D K+A + Sbjct: 399 SIDQDPNGEFIRRWLPELENVSNENIHTP--WLEKHN-AVDYPDPIIDEKQARKFAADNI 455 Query: 475 YAAKKQS 481 Y +K S Sbjct: 456 YKIRKNS 462 >gi|292656958|ref|YP_003536855.1| deoxyribodipyrimidine photolyase [Haloferax volcanii DS2] gi|291372215|gb|ADE04442.1| deoxyribodipyrimidine photolyase [Haloferax volcanii DS2] Length = 503 Score = 154 bits (388), Expect = 4e-35, Method: Compositional matrix adjust. Identities = 92/264 (34%), Positives = 137/264 (51%), Gaps = 13/264 (4%) Query: 208 FPIGEQNALHILRKF--CKEKVYYYVEQRD-IPAIQGTSQLSPYLSIGVLSPRQCWNRLK 264 F GE AL + + + + Y E R+ + +S+ SP+L+ G LSPR + Sbjct: 241 FDGGETAALDRVESYIWAGDHLREYKEARNGLLGADYSSKFSPWLNEGCLSPRYVKAEV- 299 Query: 265 EEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQ 324 + + D ++ S + + EL WR+F++ A + S C + I I+W +D + Sbjct: 300 DRYEDRRVENDS-TYWLVFELRWRDFFQFQFAKHGSDCFHREGIRERTDIDWRRDDAQFE 358 Query: 325 AWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGD 384 W G TG P +DA MR+LN G+M NR R ASFL DL +DWR G YF ++L+D D Sbjct: 359 RWAAGKTGIPFVDANMRELNATGYMSNRGRQNAASFLANDLRLDWRRGAAYFETRLVDYD 418 Query: 385 LASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPH 444 ASN G W + A GNDS R F+ Q R+D +++ WLPEL+ +P +Y H P Sbjct: 419 PASNYGNWAYIAGVGNDSRE--RSFDVRWQANRYDEDAEYVKTWLPELDALPAEYAHEPW 476 Query: 445 SWLDKN------DLSLNYPLPIVD 462 +L ++YP P+VD Sbjct: 477 KLSGAEQASYGVELGVDYPEPMVD 500 >gi|84385647|ref|ZP_00988678.1| deoxyribodipyrimidine photolyase [Vibrio splendidus 12B01] gi|84379627|gb|EAP96479.1| deoxyribodipyrimidine photolyase [Vibrio splendidus 12B01] Length = 462 Score = 153 bits (387), Expect = 5e-35, Method: Compositional matrix adjust. Identities = 134/464 (28%), Positives = 218/464 (46%), Gaps = 65/464 (14%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIA------TPEQWRQHGISARQSHFIY 62 + L NDLRI DN+ LY A + D K+I V + + + ++ SA + F+ Sbjct: 4 IGLYLFTNDLRINDNQLLYYAAQSVD-KLICVIVEPTLVRFSADLAQEQSYSAHRQAFVS 62 Query: 63 ASLLQVQKSLSQKG---IVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRR 119 S+ ++ +L + G +V + + D + + L + Q VT F N +E + Sbjct: 63 QSIANLESNLVKLGQQLVVIRSNHLEP-DTAEKTLSHIIVSQHVTHFFANAHCGYDERQL 121 Query: 120 DKLLEKRLQHRVICKSFDDSVLLPPGSIL--NHAL--QMYKV---YTPFRKA---LIQNL 169 + ++++ + V+C LP S L +H L ++ KV +T FRK L N Sbjct: 122 IRSIQRQSPNLVMC--------LPHHSTLFDSHELPFELSKVPSSFTKFRKLVEHLDVNR 173 Query: 170 VQADLRSLPVPAIRLTGPVTPSNIPRFFDYPF--QAIDPMFPIGEQNAL-HILRKFCKEK 226 + + +LP PA+RL +T ++ F P + + GE L H+ F + Sbjct: 174 NETVISALP-PAVRLA--LTSTSTISLFSSPNDESVVISDYWGGEGAGLAHLENYFSHDY 230 Query: 227 VYYYVEQRDI-PAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLN-E 284 + Y + R++ I+ +++ SP+L++G +SP+ + LK+ D I + W+ E Sbjct: 231 AFNYKQTRNVFDGIENSTKFSPWLALGCVSPKTIYCHLKQFEADHGINDST---YWIYFE 287 Query: 285 LIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHL------LQAWKQGYTGFPIIDA 338 L+WRE++ ++ + +G T E N + L WK G T +PI+DA Sbjct: 288 LLWREYF-----YWKCLSLGSSLFGETSDHELNSSNSSATLNLNLAKWKSGNTNYPIVDA 342 Query: 339 AMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAAST 398 MRQLNT G+M NR R + AS L+ +L +DWR G YF SQL+D D+ASN G W + A Sbjct: 343 CMRQLNTTGYMSNRGRQLAASCLIYELGIDWRHGAAYFESQLIDYDVASNWGNWAYIAGA 402 Query: 399 --------------GNDSVPYFRIFNPTIQGKRFDPQGTFIRHW 428 N + P R F+ Q +DP FI W Sbjct: 403 LRPQVSTQTNKQKNANQAQPKSRHFDLGKQTDMYDPDHAFINKW 446 >gi|219118654|ref|XP_002180095.1| cryptochrome photolyase family 1 [Phaeodactylum tricornutum CCAP 1055/1] gi|217408352|gb|EEC48286.1| cryptochrome photolyase family 1 [Phaeodactylum tricornutum CCAP 1055/1] Length = 550 Score = 153 bits (387), Expect = 6e-35, Method: Compositional matrix adjust. Identities = 146/518 (28%), Positives = 221/518 (42%), Gaps = 59/518 (11%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISAR----QSHFIYAS 64 V + W RN LR DN L AC S++ ++ +++ PE R +++F+ S Sbjct: 11 VAIHWFRNGLRFHDNPCLLDACQKSES-LLPIYVVDPEFPFAQTAGCRAGTIRANFLLES 69 Query: 65 LLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYN-------RQYEINEV 117 + +V + L + G S E L + LFY R+ + + Sbjct: 70 INEVDEKLRKMGSQL----VVVLGKSHEVLPEIVATTQAKALFYEQEAAAPVREQDAETI 125 Query: 118 RRDKLLEKRLQHRVICK--SFDDSVLLPPGSILNH-----ALQMYKVYTP-FRKALIQNL 169 + K KR CK ++ L P L A Y +T F K + Sbjct: 126 QAIKNRLKRDGKNYECKFEAYATHTLHPMERYLAQCKDHTAPSTYGSFTKIFNKMSVAKE 185 Query: 170 VQA--DLRSLPVPAIRLTGP--VTPSNIPRFFDYPFQAI-DPM---------FPIGEQNA 215 V ++ SLP +++L +P D + A D M F GE A Sbjct: 186 VNEVKEVPSLPNKSVKLLEKSFAEALRMPTLKDLGYAAAADDMKNSGKGGYAFAGGENAA 245 Query: 216 LHILRKFCKEK--VYYYVEQRDIP---AIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDL 270 + +L K V + + + P T+ LSPY+ G +SPR+ ++ L + + Sbjct: 246 IELLAKNMARSQWVATFEKPKTSPNDATRPSTTALSPYVKHGCISPRRFYHELSKVYSKY 305 Query: 271 LIKPKSGA-FSWLNELIWREFYRHLMAFYPSVCMGKPFI-PWTEKIEWNKDSHLLQAWKQ 328 K S S +L+WR+F + + Y + K P +I W+ D LL AWK Sbjct: 306 NSKETSKPPVSLHGQLMWRDF--NYLVGYSTPNFDKMIDNPIARQIPWDDDPDLLLAWKM 363 Query: 329 GYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLAS 387 TG+P IDA M QL GW+H+ R A FL + DL W G F L+D D + Sbjct: 364 SKTGYPYIDAIMTQLRETGWIHHLARHSVACFLTRGDLWQSWEDGATVFEEYLIDADWSI 423 Query: 388 NNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWL 447 NN WQW + T + YFR ++P GK+ DP G +IR WLP+ ++P +YI+ P W Sbjct: 424 NNFNWQWLSCTAH-FYQYFRCYSPIAFGKKTDPNGDYIRKWLPQFKDMPAKYIYEP--WE 480 Query: 448 DKNDL--------SLNYPLPIVDHKKACHHTLNQYYAA 477 +L NYP PIVDHK + +++ A Sbjct: 481 APIELQKKVGVIVGENYPHPIVDHKLVSKNNMSRMKEA 518 >gi|254449817|ref|ZP_05063254.1| deoxyribodipyrimidine photolyase family protein [Octadecabacter antarcticus 238] gi|198264223|gb|EDY88493.1| deoxyribodipyrimidine photolyase family protein [Octadecabacter antarcticus 238] Length = 522 Score = 153 bits (386), Expect = 6e-35, Method: Compositional matrix adjust. Identities = 131/491 (26%), Positives = 215/491 (43%), Gaps = 47/491 (9%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 +VW + DLRI D+ L AA ++A +I ++I PE W+Q S R HFI+ L + Sbjct: 18 IVWFKRDLRINDHAPLLAAS-RTNAPIIPLYIVEPEYWQQPFASRRHWHFIHDGLCDLDS 76 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQY-EINEVRRDKLLEKRLQH 129 L++ G H DS + + L V+ ++ + + + RD ++K Sbjct: 77 GLAELG----QHLVVKVGDSCDVIKQLHLDHDVSHVYAHEETGNLWTYNRDIAVQK---- 128 Query: 130 RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVP-AIRLTGPV 188 +C++ ++ P + + L+ ++ R A + + LP P A+ P Sbjct: 129 --LCQNHGIALHEAPTNGVVRRLRSRDDWSKIRNARMAEKI------LPKPNALNSFPPC 180 Query: 189 TPSNIPRFFDYPFQAIDPMFPI---GEQNALHILRKFCKEKVYYYVEQRDIPAIQG--TS 243 + +P D F + P+ + G + A+ LR F + Y+ P S Sbjct: 181 SSDTLPDKNDPIFGNV-PIGKVQKGGRKQAVADLRSFLNHRSRQYLYHISAPDSSEFHCS 239 Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSG------AFSWLNELIWREFYRHLMAF 297 +LS +L+ G LS R+ + + L AF + L WR + + Sbjct: 240 RLSAHLAWGTLSVREVAQSIVKRHAQLSPDENKSFGRNLTAFG--SRLAWRCHFIQKIED 297 Query: 298 YPSV---CMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLR 354 P + CM F ++ + D H QAW G TG+P +DA MR L GW+ R+R Sbjct: 298 QPEIETHCMHPAFEGL--RVGEHNDLHF-QAWASGQTGYPFVDACMRNLTAEGWITFRMR 354 Query: 355 MITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQ 414 + SF L +DWR+ E+ D + + Q +G + R++NP Q Sbjct: 355 AMLVSFASYQLWLDWRVTGEHLARLFTDFEPGIHYS--QLQMQSGVTGINTMRVYNPIKQ 412 Query: 415 GKRFDPQGTFIRHWLPELNNVPTQYIHAPHSW----LDKNDLSL--NYPLPIVDHKKACH 468 DP+GTFIR W+PEL +VP ++IH P W +D D +L +YP P+VD + Sbjct: 413 SMEHDPKGTFIRKWVPELKSVPDEFIHEPWKWEKTLIDDRDFTLGQDYPAPLVDQAVSAK 472 Query: 469 HTLNQYYAAKK 479 Q A ++ Sbjct: 473 AAKQQISAIRQ 483 >gi|255083581|ref|XP_002508365.1| predicted protein [Micromonas sp. RCC299] gi|226523642|gb|ACO69623.1| predicted protein [Micromonas sp. RCC299] Length = 488 Score = 153 bits (386), Expect = 7e-35, Method: Compositional matrix adjust. Identities = 139/485 (28%), Positives = 210/485 (43%), Gaps = 71/485 (14%) Query: 11 LVWLRNDLRITDNKALYAA----CHNSDAKVIAVFIA-----TPEQWRQHGISARQSHFI 61 +VW RNDLR+ DN A+ A + V+ +++ P W + F Sbjct: 3 VVWFRNDLRLQDNYAVKQAESIATRTAGCDVLPLYVFDPRTFAPSSWGSPKCGGHRGRFQ 62 Query: 62 YASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDK 121 S+L ++++L G E + Y L K N + E+R D Sbjct: 63 LESVLNLKRNLRAIGSDLLVA----VGKPEEVIPKYLLDAPGAK---NEEVCSEELRVDA 115 Query: 122 LLEKRLQHRVICKSFDDSVLLPPGSILNH---------ALQMYKVYTPFRKALIQNLVQA 172 ++ ++ D GS L H A + V+TPFR + ++ Sbjct: 116 KVKSAVKSAGNLNRLDKIW----GSTLYHKDDLPFRSDASDLPDVFTPFRNKVES---KS 168 Query: 173 DLRSLPVPAIRLTGPVTPSNI-------PRFFDYPFQAIDPM--------------FPIG 211 + R PVP PS++ P D PF D F G Sbjct: 169 EPRE-PVPPPAKGALPVPSDMTEAFAFEPTVADLPFANEDERAIAAAGAHPDGVLPFEGG 227 Query: 212 EQNALHILRKFC--KEKVYYYVEQRD-IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFV 268 E AL +R + EK+ Y E R+ + +S+L+P+L+ G +SPRQ ++ +F Sbjct: 228 ESAALARVRYYVWESEKIATYFETRNGMLGGDYSSKLAPWLAHGCVSPRQVVAEVR-KFE 286 Query: 269 DLLIKPKSGAFSWLNELIWREFY-----RHLMAFYPS----VCMGKPFIPWTEKIEWNKD 319 ++ KS + + ELIWR+F+ +H A + S W D Sbjct: 287 SQRVENKS-TYWLIFELIWRDFFKFFALKHGNAIFFSEGTAGGKMGGAGYKGGAGPWRDD 345 Query: 320 SHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQ 379 L AWK+G TG+P++DA MR+L G+M NR R AS+L D VDWR+G E+F ++ Sbjct: 346 PAALAAWKEGKTGYPLVDANMRELAATGFMSNRGRQNVASWLALDAGVDWRLGAEWFENK 405 Query: 380 LLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQY 439 LLD D ++N G W AA V F I Q K +DP+G +I++W+PEL VP +Y Sbjct: 406 LLDYDCSANWGNWVAAAGMTGGRVNKFNI---AKQTKDYDPEGEYIKYWVPELRKVPAKY 462 Query: 440 IHAPH 444 I P Sbjct: 463 IAEPR 467 >gi|301617517|ref|XP_002938187.1| PREDICTED: cryptochrome-2-like [Xenopus (Silurana) tropicalis] Length = 862 Score = 153 bits (386), Expect = 8e-35, Method: Compositional matrix adjust. Identities = 133/467 (28%), Positives = 205/467 (43%), Gaps = 43/467 (9%) Query: 2 KATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFI-ATPEQWRQH---GISARQ 57 + AM LVW R DLR+ DN AL +A + VI VF+ E+ Q+ Sbjct: 224 RGLVAMKPVLVWFRRDLRLHDNPALISALEHG-VPVIPVFLWCINEETGQNFTLATGGAT 282 Query: 58 SHFIYASLLQVQKSLSQK---GIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEI 114 ++++ +LL++ +SL Q+ I+F+ + E L S + + N YE Sbjct: 283 KYWLHHALLKLNQSLIQRFGSHIIFRVARSCE-----EELVSLVHETGADTIIINAVYEP 337 Query: 115 NEVRRDKLLEKRLQ-HRVICKSFDDSVLLPPGSILNHALQMYKV--YTPFRKALIQN--- 168 RD L+ + L+ H V K L P S+ + + + + F +N Sbjct: 338 WLKERDDLISETLRRHGVELKKHHSYCLYEPDSVSTEGVGLRGIGSVSHFMSCCKRNNSA 397 Query: 169 ---LVQADLRSLPVPA---------IRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNAL 216 + R LP P G + D+ I + E A Sbjct: 398 PIGMPLDAPRCLPAPCNWPESDHLDTLELGKMPHRKDGTLIDWAV-TIRESWDFSEDGAY 456 Query: 217 HILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKS 276 L F ++ V +Y ++ TS +SPYL G +SPR L E + PK Sbjct: 457 TCLANFLQDGVKHYEKESGRADKPYTSHISPYLHFGQISPRTV---LHEAYFTKKNVPK- 512 Query: 277 GAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPII 336 +L +L WR+ L+ +P + +P P + W+ D + L+AW++G TG+P++ Sbjct: 513 ----FLRKLAWRDLAYWLLILFPDM-PSEPVRPAYKSQRWSSDLNHLRAWQKGLTGYPLV 567 Query: 337 DAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAA 396 DAAMR+L GWM N R + ASFLV L + W G +F LLD D+A N WQ Sbjct: 568 DAAMRELWLTGWMCNYSRHVVASFLVAYLHIHWVHGYRWFQDTLLDADVAINAMMWQNGG 627 Query: 397 STGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAP 443 +G D + + +P DP G+++R W PEL +P +YIH P Sbjct: 628 MSGLDHWNF--VMHPVDSALTCDPYGSYVRKWCPELAGLPDEYIHKP 672 >gi|225442831|ref|XP_002285327.1| PREDICTED: hypothetical protein [Vitis vinifera] gi|297743390|emb|CBI36257.3| unnamed protein product [Vitis vinifera] Length = 538 Score = 152 bits (385), Expect = 9e-35, Method: Compositional matrix adjust. Identities = 150/520 (28%), Positives = 224/520 (43%), Gaps = 69/520 (13%) Query: 8 SVHLVWLRNDLRITDNKALYAACHNSDAK----VIAVFIATPEQWRQHGISARQS----H 59 S L+W R LRI DN AL A S+ VI + P+ S+R Sbjct: 5 SSSLMWFRKGLRIHDNPALQHAAKESNCVYPVFVIDPYFMEPDPNAFSPGSSRAGLNRIR 64 Query: 60 FIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRR 119 F+ SL+ + SL Q G + + I L + +++ + + Y+ +++ Sbjct: 65 FLLESLVDLDSSLRQLGSRLLVLKGDPGEVIIRCLKEWEVKRLCFEYDTDPYYQALDIKV 124 Query: 120 DKLLEK---RLQHRVICKSFDDSVLL------PP---GSILNHALQMYKVYTPFRKALIQ 167 + V FD + ++ PP S L A Q +P L Sbjct: 125 KNYASAAGIEVFSPVSHTLFDSAEIIQKNGGRPPLSYQSFLKLAGQPSWASSPLLTTLSW 184 Query: 168 NLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAI----DPMFPIGEQNALHILRKFC 223 +P + G SN+P + ++ I F GE AL LR+ Sbjct: 185 -----------LPPVGDVGTCEISNVPTVKELGYEEIGQDESTPFKGGESEALKRLRESI 233 Query: 224 KEK--VYYYVEQRDIPAI---QGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGA 278 ++K V + + + P+ T+ LSPYL G LS R + L + + ++ S Sbjct: 234 RDKEWVANFEKPKGDPSAFLKPATTVLSPYLKFGCLSSRYFYQCLTDVYKNMKWH-TSPP 292 Query: 279 FSWLNELIWREFYRHLMAFYPSVCMGKPFIP------WTEKIEWNKDSHLLQAWKQGYTG 332 S + +L+WR+F FY +V G P ++I WN D LL AW++ TG Sbjct: 293 VSLVGQLLWRDF------FY-TVGFGTPNFDRMKGNRICKQIPWNDDDELLAAWREARTG 345 Query: 333 FPIIDAAMRQLNTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGG 391 +P IDA M QL GWMH+ R A FL + DL V W G + F L+D D A NNG Sbjct: 346 YPWIDAIMVQLRKWGWMHHLARHCVACFLTRGDLFVHWEKGRDVFERLLIDSDWAINNGN 405 Query: 392 WQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWL---- 447 W W S + Y RI++P GK++DP G +IRH+LP L ++P +YI+ P W Sbjct: 406 WLW-LSCSSFFYQYNRIYSPISFGKKYDPNGNYIRHFLPILKDMPKEYIYEP--WTAPPS 462 Query: 448 ----DKNDLSLNYPLPIVDHKKA---CHHTLNQYYAAKKQ 480 K + +YP P+V H A C L + YA K+ Sbjct: 463 IQAKAKCIIGKDYPKPVVCHDSAIKECKRKLAEAYALNKR 502 >gi|322368590|ref|ZP_08043158.1| deoxyribodipyrimidine photolyase [Haladaptatus paucihalophilus DX253] gi|320551874|gb|EFW93520.1| deoxyribodipyrimidine photolyase [Haladaptatus paucihalophilus DX253] Length = 520 Score = 152 bits (385), Expect = 9e-35, Method: Compositional matrix adjust. Identities = 133/506 (26%), Positives = 215/506 (42%), Gaps = 86/506 (16%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHG---------ISARQ 57 M LVW R DLR+ DN+AL A + + F R++G + + Sbjct: 1 MKTALVWFRTDLRVRDNRALAVASEAERLRCVYCFDPREFGSREYGGKDSFRYEKTGSHR 60 Query: 58 SHFIYASLLQVQKSLSQKG--IVFQYHQCSNFDDSIEW---LDSYCLQQRVTKLFYNRQY 112 + F+ S+ ++ SL ++G +V ++ + S+ D C T + Sbjct: 61 TRFLRESVEALRISLRERGNELVVRHGRPEEVVPSLAADIDADLVCFHALPTP----EER 116 Query: 113 EINEVRRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQA 172 + ++L + +S L P + ++ +T FR+ + ++ A Sbjct: 117 AVERAVTERLADPETDVDADVESIWGHTLYHPDDVPVPVAEIDDTFTTFRQTVERS--DA 174 Query: 173 DLRSL--------PVP-----AIRLTGP------VTPSNIPRFFDYPFQAIDP------- 206 D+R PVP A + G + P IP F D ++P Sbjct: 175 DVRPTVDTPTTLPPVPEEVTEAGKREGEGEDGDEIDPGTIPSFADL---GVEPPTRDERR 231 Query: 207 --MFPIGEQNALHILRKF--CKEKVYYYVEQRD-IPAIQGTSQLSPYLSIGVLSPRQCWN 261 F GE L L ++ ++++ Y E R+ + +S+LSP+L+ G LSPR + Sbjct: 232 VLDFEGGEPAGLERLERYVWTRDRLREYKETRNGLLGSDYSSKLSPWLNAGCLSPRTVFE 291 Query: 262 ---RLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNK 318 R + E V+ + + EL+WR+F++ A + S + I I+W Sbjct: 292 TVQRYERERVE-----NESTYWLVFELLWRDFFQFQFAKHGSQPFKRRGIR-RRTIDWRN 345 Query: 319 DSHL---------------------LQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMIT 357 + WK+G TG P +DA MR+LN G+M NR R Sbjct: 346 GEGDGDSGHDGGDEGSGDDGDGECEFERWKRGETGIPFVDANMRELNETGYMSNRGRQNV 405 Query: 358 ASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKR 417 AS L DL +DWR G YF ++L+D D ASN G W + A GNDS R F+ Q + Sbjct: 406 ASVLANDLRIDWRKGAAYFETKLVDYDPASNYGNWAYVAGVGNDS--RNRSFDVLWQAEH 463 Query: 418 FDPQGTFIRHWLPELNNVPTQYIHAP 443 +DP ++++WLPEL +VP + H P Sbjct: 464 YDPDAAYVKYWLPELRDVPDEKAHEP 489 >gi|224073768|ref|XP_002304163.1| predicted protein [Populus trichocarpa] gi|222841595|gb|EEE79142.1| predicted protein [Populus trichocarpa] Length = 540 Score = 152 bits (385), Expect = 9e-35, Method: Compositional matrix adjust. Identities = 152/523 (29%), Positives = 229/523 (43%), Gaps = 64/523 (12%) Query: 1 MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQW-----------R 49 M A+ + S+ +W R LRI DN AL A SD V VF+ P R Sbjct: 1 MAASGSGSI--IWFRKGLRIHDNPALEYASKGSDF-VYPVFVIDPHYMEPDPKAFSPGSR 57 Query: 50 QHGISARQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYN 109 G++ + F+ SL+ + SL + G + L + +++ + + Sbjct: 58 LAGLN--RIRFLLESLVDLDTSLKKLGSRLLILRGEPGQVLTRCLKEWGVKKLCFEYDTD 115 Query: 110 RQYEINEVRRDKLLEKRLQHRVICKSFDDSVLLPPGSILN-HALQMYKVYTPFRKALIQ- 167 Y+ ++R + E + S L P I+ + + Y F K Q Sbjct: 116 PHYQALDIR---VKEYASAAGIEVFSPVSHTLFNPADIIQRNGGKPPLTYQSFLKLAGQP 172 Query: 168 ----NLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPM---FPIGEQNALHILR 220 + + + SLP + G S +P D + I+ F GE AL L+ Sbjct: 173 SWASSPLLTSISSLP--PVGDVGSCEISEVPTIKDLGYGDIEQEWIPFRGGESEALKRLK 230 Query: 221 KFCKEK--VYYYVEQRDIPAI---QGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPK 275 + +K V + + + P+ T+ LSPYL G LS R + L++ + ++ K Sbjct: 231 ESISDKEWVANFEKPKGNPSAFVKPATTVLSPYLKFGCLSSRYFYQCLQDVYKNVQ-KHT 289 Query: 276 SGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTE------KIEWNKDSHLLQAWKQG 329 S S +L+WR+F FY +V G P E +I WN D LL AW++ Sbjct: 290 SPPVSLAGQLLWRDF------FY-TVAFGTPNFDRMEGNKLCKQIPWNDDDELLAAWREA 342 Query: 330 YTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASN 388 TG+P IDA M QL GWMH+ R A FL + DL + W G + F L+D D A N Sbjct: 343 RTGYPWIDAIMVQLRKWGWMHHLARHSVACFLTRGDLFLHWERGRDVFERLLIDSDWAIN 402 Query: 389 NGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWL- 447 NG W W S + Y RI++P GK++DP G +IRH+LP L ++P +YI+ P W Sbjct: 403 NGNWLW-LSCSSFFYQYNRIYSPISFGKKYDPNGDYIRHFLPVLKDMPKEYIYEP--WTA 459 Query: 448 -------DKNDLSLNYPLPIVDH---KKACHHTLNQYYAAKKQ 480 K + +YP P+V H K C L + YA K+ Sbjct: 460 PPGIQRKAKCIIGRDYPKPVVYHDSASKECKRKLAEAYALNKK 502 >gi|222622395|gb|EEE56527.1| hypothetical protein OsJ_05816 [Oryza sativa Japonica Group] Length = 551 Score = 152 bits (385), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 143/509 (28%), Positives = 224/509 (44%), Gaps = 52/509 (10%) Query: 11 LVWLRNDLRITDNKALYAACHNSD-AKVIAVFIATPEQWRQHGI-----SARQS----HF 60 +VW R LR+ DN AL AA A++ VF+ P R SAR F Sbjct: 16 MVWFRKGLRVHDNPALDAARRGGAVARLYPVFVLDPRYLRPDQAAPSPGSARAGVARVRF 75 Query: 61 IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120 + SL + L + G + + D + + + KL + E + RD Sbjct: 76 LLESLSDLDARLRRLGSRLLLLRARDDGDVAGTVCAALKDWNIGKLCFESDTEPYALARD 135 Query: 121 K-LLEKRLQHRVICKSFDDSVLLPPGSIL----NHALQMYKVYTPFRKALIQNLVQADLR 175 K +++ + S L P I+ Y+ + + +++ Sbjct: 136 KKVMDFAAASGIDVFSPVSHTLFDPAEIIEKNGGRPPMTYQSFVAIAGEPPEPIME---E 192 Query: 176 SLPVPAIRLTGPVTPSNIPRFFDYPFQAID----PMFPIGEQNALHILRKFC--KEKVYY 229 +P + TG +PR + + I +F GE AL +R+ KE V Sbjct: 193 YSELPPVGDTGEYELLPVPRVEELGYGDISQEDLSLFRGGETEALKRMRESLHDKEWVAK 252 Query: 230 YVEQRDIPAI---QGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELI 286 + + + P+ T+ LSPYL G LS R ++ +++ + K + S +L+ Sbjct: 253 FEKPKGDPSAFLKPATTVLSPYLKFGCLSSRYFYHCIQDIYRSTK-KHTNPPVSLTGQLL 311 Query: 287 WREFYRHLMAFYPSVCMGKPFIPW------TEKIEWNKDSHLLQAWKQGYTGFPIIDAAM 340 WR+F FY +V G P ++I W ++ L AW+ G TG+P IDA M Sbjct: 312 WRDF------FY-TVAFGTPNFDQMKGNKICKQIPWTENEELFPAWRDGRTGYPWIDAIM 364 Query: 341 RQLNTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTG 399 QL GWMH+ R A FL + DL + W G + F L+D D A NNG W W S Sbjct: 365 IQLRKWGWMHHLARHSVACFLTRGDLFIHWEKGRDVFERLLIDSDWAINNGNWMW-LSCS 423 Query: 400 NDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIH----APHSWLDKND--LS 453 + Y RI++PT GK++DP G +IRH++P L ++P +YI+ AP S K + + Sbjct: 424 SFFYQYHRIYSPTSFGKKYDPNGNYIRHFIPVLKDMPKEYIYEPWTAPLSIQKKANCIIG 483 Query: 454 LNYPLPIVDH---KKACHHTLNQYYAAKK 479 +YP P+VDH K C + + YA+ + Sbjct: 484 KDYPKPVVDHAIASKECKKMMGEAYASNR 512 >gi|47217864|emb|CAG02357.1| unnamed protein product [Tetraodon nigroviridis] Length = 2050 Score = 152 bits (384), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 148/494 (29%), Positives = 220/494 (44%), Gaps = 61/494 (12%) Query: 8 SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67 S+H W R LR+ DN AL AA + ++ VFI P + + F+ +L Sbjct: 5 SIH--WFRKGLRLHDNPALMAALRDCK-ELYPVFILDP-HLHNKSVGINRCRFLIGALRD 60 Query: 68 VQ---KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLL- 123 + ++L+ + V + E Q +VTKL Y E + RD+ + Sbjct: 61 LDLSLRNLNSRLFVVR-------GKPEEVFPKLFSQWKVTKLTYEYDTEPYSLSRDRTVT 113 Query: 124 ----EKRLQ--HRVICKSFDDSVLL------PPGSILNHALQMYKVYTPFRKALIQNLVQ 171 E +Q +RV +D +L PP + + + K+ P R I Sbjct: 114 TLAEESGVQVVYRVSHTLYDTERVLEENNGKPPLTYNSMQAIVKKLGPPKRP--ISAPSM 171 Query: 172 ADLRSLPVPAIRLTGPVTPSNIPRFFDY---PFQAIDPMFPIGEQNALHILRKFCKEK-- 226 DL+ + P L IP D P + FP GEQ AL L K+ Sbjct: 172 DDLKGVSTPC--LEDHEKKYGIPTLEDLGHDPAGLPEEKFPGGEQEALRRLEDQMKKTSW 229 Query: 227 VYYYVEQRDIPAI--QGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNE 284 V + + + P T+ LSPY++ G LS R W RL + + K + S + Sbjct: 230 VCNFEKPQTSPNSLSPSTTVLSPYVTFGCLSARTFWWRLSDVYSGK--KHSAPPVSLHGQ 287 Query: 285 LIWREFYRHLMAFYPSVCMGKPFI------PWTEKIEWNKDSHLLQAWKQGYTGFPIIDA 338 L+WREF FY + +G P P +++W+ DS L AW++ TGFP IDA Sbjct: 288 LLWREF------FY-TASVGIPNFNKMADNPVCTQVDWDTDSEYLAAWREARTGFPFIDA 340 Query: 339 AMRQLNTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAAS 397 M QL GW+H+ R A FL + DL + W G++ F LLDGD A N G WQW ++ Sbjct: 341 IMTQLRQEGWIHHLARHAVACFLTRGDLWISWEEGQKVFEELLLDGDWALNAGNWQWLSA 400 Query: 398 TGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIH----APHSWLDKND-- 451 + +FR+++P GK+ D G +I+ +LP L P QYI+ AP S Sbjct: 401 SAFFHQ-FFRVYSPVAFGKKTDKNGDYIKKYLPHLKKFPAQYIYEPWKAPQSIQKAAGCI 459 Query: 452 LSLNYPLPIVDHKK 465 + +YP PIV H++ Sbjct: 460 IGKDYPHPIVKHEE 473 >gi|307103112|gb|EFN51376.1| hypothetical protein CHLNCDRAFT_7260 [Chlorella variabilis] Length = 491 Score = 152 bits (384), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 140/501 (27%), Positives = 216/501 (43%), Gaps = 42/501 (8%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 ++W R LR+ DN AL AA +D + +FI P + I + F+ SL + Sbjct: 2 IIWFRKGLRLHDNPALLAAAAGAD-HLCPIFILDPWFLKSDKIGVNRIQFLLESLTDLDA 60 Query: 71 SLSQKG----IVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 S +G ++ + + + L + VT+L + E RRD + Sbjct: 61 SFRARGSRLLVLRGRSEEAPSCQAAASLPGALQEWGVTRLCFEHDTEPYAKRRDVAV--- 117 Query: 127 LQHRVICKSFDDSVLLPPGSILNHA---LQMYKVYTP-----FRKALIQNLVQADLRSLP 178 R + ++ V+ P L LQ P F K + A R + Sbjct: 118 ---RQLAEAAGVEVVAPVSHTLYDPQVLLQRNGGRAPLTMQSFTKLVDGGGCAAGYRCIA 174 Query: 179 VPAIRLTGPVTPSNI--PRFFD--YPFQAIDPMFPIGEQNALHILRKFCKEK--VYYYVE 232 P+ + S++ P D YP P F GE AL + + +K V + + Sbjct: 175 APSWPQAAALVSSSVAVPSLTDIGYPPTGTTP-FKGGESAALARMADYLSDKGWVCAFEK 233 Query: 233 QRDIPAI---QGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWRE 289 + PA T+ LSPYL G LSPR +L++ + + S +L+WRE Sbjct: 234 PKGNPAAFVRPSTTVLSPYLKFGCLSPRLFHAKLQQIYAERNGMHTQPPVSLRGQLLWRE 293 Query: 290 FYRHLMAFYPSV--CMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIG 347 F+ A P+ G P ++I W D + AW+ TG+P IDA M QL G Sbjct: 294 FFTLCGAAIPNFDRMAGNPI---CKQIPWVDDPERIAAWEHSRTGYPWIDAIMAQLRQQG 350 Query: 348 WMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYF 406 WMH+ R A FL + DL W G+ F L+D D + N WQW +++ S YF Sbjct: 351 WMHHLARHSVACFLTRGDLWCSWEAGQAVFDKYLIDADWSLNAANWQWLSASAFFSQ-YF 409 Query: 407 RIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSW------LDKNDLSLNYPLPI 460 R+++P GK++D G +IR +LP L ++P +YI+ P + + +YP PI Sbjct: 410 RVYSPIAFGKQYDKNGDYIRRFLPVLKDMPVRYIYEPWTAPLSVQQAAGCVVGKDYPRPI 469 Query: 461 VDHKKACHHTLNQYYAAKKQS 481 VDH+ A + + AA S Sbjct: 470 VDHQAAMKENMARMKAAYGAS 490 >gi|5689255|dbj|BAA82885.1| blue-light photoreceptor [Oryza sativa Japonica Group] Length = 681 Score = 152 bits (383), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 98/265 (36%), Positives = 142/265 (53%), Gaps = 17/265 (6%) Query: 211 GEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDL 270 G QNA L F + Y R TS LSPYL G LS R+ +++++ + Sbjct: 225 GWQNADKALAAFLNGPLMDYSVNRKKADSASTSLLSPYLHFGELSVRKVFHQVR---MKQ 281 Query: 271 LIKPKSGAFS-------WLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLL 323 L+ G + +L + RE+ R+L +P + KP + W D Sbjct: 282 LMWSNEGNHAGDESCVLFLRSIGLREYSRYLTFNHP-CSLEKPLLAHLRFFPWVVDEVYF 340 Query: 324 QAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDG 383 + W+QG TG+P++DA MR GW+H+R+R++ +SF VK L + WR G +YF LLDG Sbjct: 341 KVWRQGRTGYPLVDAGMRDSRATGWLHDRIRVVVSSFFVKVLQLPWRWGMKYFWDTLLDG 400 Query: 384 DLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIH-- 441 DL S+ GWQ+ + + D RI NP ++G +FDP G ++R WLPEL +PT++IH Sbjct: 401 DLESDRLGWQYISGSLPDGRELDRIDNPQLEGYKFDPHGEYVRRWLPELARLPTEWIHHP 460 Query: 442 --APHSWLDKNDLSL--NYPLPIVD 462 AP S L + L NYPLPIV+ Sbjct: 461 WDAPESVLQAAGIELGSNYPLPIVE 485 >gi|32400625|dbj|BAC78798.1| cryptochrome [Oryza sativa Japonica Group] Length = 568 Score = 152 bits (383), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 115/362 (31%), Positives = 173/362 (47%), Gaps = 38/362 (10%) Query: 131 VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT- 189 +I +SF+ +L P +++ Q + ++ PF + LP I +G ++ Sbjct: 7 IIVQSFNADLLYEPWEVVDDEGQSFTMFAPFWNRCLSMPYDPAAPLLPPKRIN-SGDLSM 65 Query: 190 -PSNIPRFFDYPFQAIDPMFP----IGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244 PS+ F D + + + G QN L F + +Y R TS Sbjct: 66 CPSDDLIFEDDSEEGSNALLARAWSPGWQNRDKALTAFLNGPLIHYSVNRKKADSASTSL 125 Query: 245 LSPYLSIGVLSPRQCW--------------NRLKEEFVDLLIKPKSGAFSWLNELIWREF 290 LSPYL G LS R+ + NR EE L ++ + RE+ Sbjct: 126 LSPYLHFGELSVRKVFHLVRMKQLVWSNEGNRAAEESCTLFLR----------SIGLREY 175 Query: 291 YRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMH 350 R+L +P KP + W + + W+QG TG+P++DA MR+L GW+H Sbjct: 176 SRYLSFNHP-CSHEKPLLAHLRFFPWVINECYFKIWRQGRTGYPLVDAGMRELWATGWLH 234 Query: 351 NRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFN 410 +R+R++ +SF VK L + WR G +YF LLD DL S+ GWQ+ + + D RI N Sbjct: 235 DRIRVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGSLPDGRELDRIDN 294 Query: 411 PTIQGKRFDPQGTFIRHWLPELNNVPTQYIH----APHSWLDKNDLSL--NYPLPIVDHK 464 P ++G +FDP G ++R WLPEL +PT++IH AP S L + L NYPLPIV Sbjct: 295 PQLEGYKFDPHGEYVRRWLPELARLPTEWIHHPWDAPASVLQAAGVELGSNYPLPIVGLD 354 Query: 465 KA 466 +A Sbjct: 355 RA 356 >gi|197246983|gb|AAI64413.1| Cry4 protein [Danio rerio] Length = 558 Score = 152 bits (383), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 106/315 (33%), Positives = 156/315 (49%), Gaps = 47/315 (14%) Query: 188 VTPSNIPRFFDYPFQA-------IDPMFPIGEQNALHILRKFCKEK--VYYYVEQRDIP- 237 VTP ++ R + P A + ++P GE +AL L K + + V + + R IP Sbjct: 180 VTPVDVDRVYAVPSLADLGLQVEAEVLWPGGESHALQRLEKHFQSQGWVANFSKPRTIPN 239 Query: 238 -AIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAF---SWLNELIWREFYRH 293 + T+ LSPYLS+G LS R ++RL + + K+ + S +++WREF+ Sbjct: 240 SLLPSTTGLSPYLSLGCLSVRTFYHRLNSIYA----QSKNHSLPPVSLQGQVLWREFFYT 295 Query: 294 LMAFYP--------SVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNT 345 + + P S+C+ +I+W D L+ W+ TGFP IDA M QL Sbjct: 296 VASATPNFTKMEGNSICL---------QIDWYHDPERLEKWRTAQTGFPWIDAIMTQLRQ 346 Query: 346 IGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVP 404 GW+H+ R A FL + DL + W G + F LLD D + N G W W +++ Sbjct: 347 EGWIHHLARHAVACFLTRGDLWITWEEGMKVFEEFLLDADYSVNAGNWMWLSASAFFH-K 405 Query: 405 YFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSL--------NY 456 Y RIF P G+R DPQG ++R +LP L N P+QYI+ P W D+ L +Y Sbjct: 406 YTRIFCPVRFGRRTDPQGEYLRKYLPVLKNFPSQYIYEP--WKAPEDVQLSAGCIIGKDY 463 Query: 457 PLPIVDHKKACHHTL 471 P PIV H +A L Sbjct: 464 PRPIVSHIEASQRNL 478 >gi|301097563|ref|XP_002897876.1| cryptochrome, putative [Phytophthora infestans T30-4] gi|262106624|gb|EEY64676.1| cryptochrome, putative [Phytophthora infestans T30-4] Length = 656 Score = 152 bits (383), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 149/542 (27%), Positives = 228/542 (42%), Gaps = 103/542 (19%) Query: 11 LVWLRNDLRITDNKALYAA---CHNSDAKV-------IAVFIATPEQWRQHGISARQSHF 60 LVW R DLR+ DN A+ AA + K+ I ++I + G++ Q F Sbjct: 92 LVWFRRDLRLHDNLAISAALDWIKQEEEKIPGRKVVFIPLYIVHRPKIMLCGVNRFQ--F 149 Query: 61 IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120 + S+ + +L+ +G + D ++ L R++ LF++ E + RD Sbjct: 150 LLESVSDLADALAARGSRLVVAR----GDGVQVLRRLLPAWRISHLFFDAASEPFAIDRD 205 Query: 121 KL---------LEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQ 171 +E + H D I + + K YT F +AL Sbjct: 206 NRAVALARQLGVETHVTHGYTLYDLD-------AVIAGNNGEPPKTYTAFLRALAMQPKP 258 Query: 172 ADLRS----LPVPAI--------------------RLTGPVTPSNIPRFFDYPFQAID-- 205 +P P + GP +P D+ F A + Sbjct: 259 PKPLPTPEKVPAPVYLPSELYQQVIDYWQNRLKPDSIAGPEQQFTLPEVTDFGFVAPERH 318 Query: 206 PMFPIGEQNALHILRKFCKE--KVYYYVEQRDIPA----IQGTSQLSPYLSIGVLSPRQC 259 P GEQ AL ILR +C+ +V + + + PA T+ LSPYL G +SPR Sbjct: 319 PFIYGGEQIALGILRDYCRNEGRVVKFEKPKTSPAQTTPSASTTSLSPYLYFGSISPRTF 378 Query: 260 WNRLK---EEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEW 316 + ++ E L + S +L+WREF+ H + P +I+W Sbjct: 379 LHHVRGIQEHHAKAL---SATPVSLDGQLLWREFF-HCHGRANAYFDKMEESPTCLQIDW 434 Query: 317 ------------NKDSHL----LQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASF 360 D L QAW G TGFP IDA M QL GWMH+ R A F Sbjct: 435 RWHTIPEREEDMTDDDKLARSQFQAWIDGQTGFPWIDAIMIQLKEEGWMHHLARHSVACF 494 Query: 361 LVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFD 419 L + DL + W G E F +L+D D + N G W W +++ S YFR+++P+ GK++D Sbjct: 495 LTRGDLYISWVRGLEVFQERLIDHDWSINCGNWLWLSASYFFSA-YFRVYSPSTFGKKWD 553 Query: 420 PQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSL----------NYPLPIVDHKKACHH 469 P+G FIR ++P L+ +P +YI+ P W K +++ +YP PIVDHK A Sbjct: 554 PEGLFIRKYVPALSKMPVKYIYEP--W--KAPMTVQHAAGCLIGKDYPFPIVDHKIAMRR 609 Query: 470 TL 471 ++ Sbjct: 610 SM 611 >gi|27882257|gb|AAH44385.1| Cry4 protein [Danio rerio] Length = 579 Score = 151 bits (382), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 106/315 (33%), Positives = 156/315 (49%), Gaps = 47/315 (14%) Query: 188 VTPSNIPRFFDYPFQA-------IDPMFPIGEQNALHILRKFCKEK--VYYYVEQRDIP- 237 VTP ++ R + P A + ++P GE +AL L K + + V + + R IP Sbjct: 201 VTPVDVDRVYAVPSLADLGLQVEAEVLWPGGESHALQRLEKHFQSQGWVANFSKPRTIPN 260 Query: 238 -AIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAF---SWLNELIWREFYRH 293 + T+ LSPYLS+G LS R ++RL + + K+ + S +++WREF+ Sbjct: 261 SLLPSTTGLSPYLSLGCLSVRTFYHRLNSIYA----QSKNHSLPPVSLQGQVLWREFFYT 316 Query: 294 LMAFYP--------SVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNT 345 + + P S+C+ +I+W D L+ W+ TGFP IDA M QL Sbjct: 317 VASATPNFTKMEGNSICL---------QIDWYHDPERLEKWRTAQTGFPWIDAIMTQLRQ 367 Query: 346 IGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVP 404 GW+H+ R A FL + DL + W G + F LLD D + N G W W +++ Sbjct: 368 EGWIHHLARHAVACFLTRGDLWITWEEGMKVFEEFLLDADYSVNAGNWMWLSASAFFH-K 426 Query: 405 YFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSL--------NY 456 Y RIF P G+R DPQG ++R +LP L N P+QYI+ P W D+ L +Y Sbjct: 427 YTRIFCPVRFGRRTDPQGEYLRKYLPVLKNFPSQYIYEP--WKAPEDVQLSAGCIIGKDY 484 Query: 457 PLPIVDHKKACHHTL 471 P PIV H +A L Sbjct: 485 PRPIVSHIEASQRNL 499 >gi|260063633|ref|YP_003196713.1| deoxyribodipyrimidine photolyase [Robiginitalea biformata HTCC2501] gi|88783078|gb|EAR14251.1| deoxyribodipyrimidine photolyase [Robiginitalea biformata HTCC2501] Length = 515 Score = 151 bits (382), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 123/443 (27%), Positives = 192/443 (43%), Gaps = 26/443 (5%) Query: 2 KATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQ---- 57 K M+ L W RNDLR+TDN L AAC S +V+ VF P +R+ R+ Sbjct: 39 KNGETMTTALYWFRNDLRVTDNPGLLAAC--SSQRVLTVFCFDPADFREGDYGIRRMGPY 96 Query: 58 -SHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINE 116 + F+ S+L +++ L I H F + L + VT L R++ +E Sbjct: 97 RAGFLRESVLALREQLQGLNISLHIH----FGPPGDILPGMIKKYGVTDLHLQREWTRDE 152 Query: 117 VRRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQ-MYKVYTPFRKALIQNLVQADLR 175 + + L V L P + + + V+T FRK +++ Sbjct: 153 CLALDAVREGLPPGVTVHEHYQQFLFHPEDLPYDSFDDIPDVFTGFRKKCEKHVSVRSPE 212 Query: 176 SLPVPAIRLTGPVTPSNIPRF----FDYPFQAIDPMFPI--GEQNALHILRKFCKEKVYY 229 P + P +P + P FP GE A L+++ E + Sbjct: 213 DTPARREAVFAPAGDGGLPGWEALGMAPPRADSRSAFPFRGGEPAAWDRLQEYFWESRFL 272 Query: 230 YVEQRDIPAIQGT---SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELI 286 +R + GT ++ SP+L+ G LS RQ + +K + ++ + + ELI Sbjct: 273 STYKRTRNGLVGTRYSTKFSPWLANGSLSARQIYREVKR--YEQEVEKNRDTYWLVFELI 330 Query: 287 WREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTI 346 WR++++++ + I E+ +W W QG T I+A M++L Sbjct: 331 WRDYFKYVSLKHGPKIFAPGGIREVER-DWGASREAFARWTQGETDSDFINANMQELRLT 389 Query: 347 GWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYF 406 GWM NR R TAS+ +D+ DWR+G +F LLD D+ SN G W + ++ GND P Sbjct: 390 GWMSNRGRQNTASYWSQDMGQDWRLGAAWFQYLLLDYDVHSNWGNWMYNSAVGND--PRN 447 Query: 407 RIFNPTIQGKRFDPQGTFIRHWL 429 R FNP Q R+D G F R WL Sbjct: 448 RKFNPEHQASRYDASGKFRRLWL 470 >gi|301617223|ref|XP_002938047.1| PREDICTED: LOW QUALITY PROTEIN: cryptochrome DASH-like [Xenopus (Silurana) tropicalis] Length = 523 Score = 151 bits (382), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 142/487 (29%), Positives = 227/487 (46%), Gaps = 63/487 (12%) Query: 14 LRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHG---------ISARQSHFIYAS 64 LRNDLR+ DN+ L+ A N+D +++ ++ P R +G + F+ S Sbjct: 12 LRNDLRLHDNEVLHWAHRNAD-QIVPLYCFDP---RHYGGTHYFNFPKTGPHRLKFLLES 67 Query: 65 LLQVQKSLSQKGIVFQYHQ------CSNFDDSIEWLDSYCLQQRVTKL---FYNRQY--- 112 + ++ +L ++G + + + + + L + VT + YN Sbjct: 68 VQDLRNTLKERGSNLLLRRGKPEEIIAGLVKQLGNVSAVTLHEEVTVVPLYSYNPILWPP 127 Query: 113 EINEVRRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKAL-----IQ 167 + + +R L HR +D LP H + VYT FRKA ++ Sbjct: 128 DWSGLRYQTFWGSTLYHR------ED---LP----FRHISSLPDVYTQFRKAAETQGKVR 174 Query: 168 NLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDP--MFPI--GEQNALHILRKFC 223 + Q R P+P+ G V P++ + FD DP FP GE AL L + Sbjct: 175 STFQMPDRLKPLPSGLEEGSV-PTH--QDFDQQDPLTDPRSAFPCCGGETQALQRLHHYF 231 Query: 224 KEK--VYYYVEQRD-IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFS 280 E V Y + R+ + I +++ +P+L++G +SPR + ++++ + + Sbjct: 232 WETNLVASYKDTRNGLIGIDYSTKFAPWLALGCISPRYIYEQIRK--YEKERTANQSTYW 289 Query: 281 WLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAM 340 + EL+WR+++R + Y + + + W KD L AWK+G TG P +DA M Sbjct: 290 VIFELLWRDYFRFVALKYGRRIFFLRGLQ-DKDVPWKKDPKLFDAWKEGRTGVPFVDANM 348 Query: 341 RQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGN 400 R+L G+M NR R ASFL KDL +DWR+G E+F L+D D+ SN G W ++A GN Sbjct: 349 RELAMTGFMSNRGRQNVASFLTKDLXIDWRLGAEWFEYLLVDYDVCSNYGNWLYSAGIGN 408 Query: 401 DSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAP----HSWLDKNDLSLN- 455 D R FN QG +D G +IR W+PEL + H P + L +++SL Sbjct: 409 DPREN-RKFNMIKQGLDYDAGGDYIRLWVPELQQIKGGDAHTPWALSTASLAHSNVSLGE 467 Query: 456 -YPLPIV 461 YP PIV Sbjct: 468 TYPYPIV 474 >gi|147902555|ref|NP_001084438.1| cryptochrome DASH [Xenopus laevis] gi|82239825|sp|Q75WS4|CRYD_XENLA RecName: Full=Cryptochrome DASH gi|41688006|dbj|BAD08601.1| cryptochrome dash [Xenopus laevis] Length = 523 Score = 151 bits (381), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 138/484 (28%), Positives = 228/484 (47%), Gaps = 47/484 (9%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQH------GISARQSHFIY 62 V + LRNDLR+ DN+ L+ A N+D +++ ++ P + + F+ Sbjct: 7 VIICLLRNDLRLHDNEVLHWAHRNAD-QIVPLYCFDPRHYVGTHYFNFPKTGPHRLKFLL 65 Query: 63 ASLLQVQKSLSQKG---IVFQYHQCSNFDDSIEWL---DSYCLQQRVTKLFYNRQYEINE 116 S+ ++ +L +KG ++ + +D ++ L + L + TK + ++ Sbjct: 66 ESVRDLRITLKKKGSNLLLRRGKPEEVIEDLVKQLGNVSAVTLHEEATK----EETDVES 121 Query: 117 VRRDKLLEKRLQHRVICKSFDDSVLLPPGSI-LNHALQMYKVYTPFRKAL-----IQNLV 170 + +++ ++F S L + H + VYT FRKA+ ++ Sbjct: 122 AVKQACTRLGIKY----QTFWGSTLYHREDLPFRHISSLPDVYTQFRKAVETQGKVRPTF 177 Query: 171 QADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDP--MFPI--GEQNALHILRKFCKEK 226 Q + P+P+ G V PS+ FD DP FP GE AL L + E Sbjct: 178 QMPDKLKPLPSGLEEGSV-PSH--EDFDQQDPLTDPRTAFPCSGGESQALQRLEHYFWET 234 Query: 227 --VYYYVEQRD-IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLN 283 V Y + R+ + + +++ +P+L++G +SPR + ++ + + + + Sbjct: 235 NLVASYKDTRNGLIGLDYSTKFAPWLALGCVSPRYIYEQIGK--YEKERTANQSTYWVIF 292 Query: 284 ELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQL 343 EL+WR+++R + Y + + I W +D L AWK+G TG P +DA MR+L Sbjct: 293 ELLWRDYFRFVALKYGRRIFFLRGLQ-DKDIPWKRDPKLFDAWKEGRTGVPFVDANMREL 351 Query: 344 NTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSV 403 G+M NR R ASFL KDL +DWR+G E+F L+D D+ SN G W ++A GND Sbjct: 352 AMTGFMSNRGRQNVASFLTKDLGIDWRMGAEWFEYLLVDYDVCSNYGNWLYSAGIGNDPR 411 Query: 404 PYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAP----HSWLDKNDLSLN--YP 457 R FN QG +D G +IR W+PEL + H P ++ L +LSL YP Sbjct: 412 EN-RKFNMIKQGLDYDSGGDYIRLWVPELQQIKGGDAHTPWALSNASLAHANLSLGETYP 470 Query: 458 LPIV 461 PIV Sbjct: 471 YPIV 474 >gi|72115950|ref|XP_788938.1| PREDICTED: similar to Cry5 protein [Strongylocentrotus purpuratus] gi|115955764|ref|XP_001189626.1| PREDICTED: similar to Cry5 protein [Strongylocentrotus purpuratus] Length = 559 Score = 151 bits (381), Expect = 3e-34, Method: Compositional matrix adjust. Identities = 137/500 (27%), Positives = 219/500 (43%), Gaps = 53/500 (10%) Query: 13 WLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ--- 69 W R LRI DN AL A + +FI P + + F+ +L + Sbjct: 44 WFRKGLRIHDNPALLTAIQGTKV-FRPIFILDPHFIESEKVGINRWRFLLETLQDLDYSF 102 Query: 70 KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH 129 ++L + V + + + F + + + VT+L + E RRD+ + + Sbjct: 103 RALGTRLFVVRGNPTTVFPEIFK-------KWNVTRLTFEVDTEPYARRRDQEVIE---- 151 Query: 130 RVICKSFDDSVLLPPGSILNHALQMYKV--YTP---FRK--ALIQNLVQADLRSLPVPAI 182 + K D V+ L + K Y P +++ L+ + + LP Sbjct: 152 --LAKKNDVEVITKVSHTLYDTERTIKANKYKPPMTYQRMVGLLSEIGAPAIPELPPLMA 209 Query: 183 RLTGPVTPS--------NIPRFFDY--PFQAIDP-MFPIGEQNALHILRKFCKEK--VYY 229 TG TP +P D + + P ++P GE L + K V Sbjct: 210 NFTGVATPVKPDHDNEYGVPSLEDLGLDLEGLGPRLYPGGETEGLQRMDLHLARKSWVCG 269 Query: 230 YVEQRDIPAI--QGTSQLSPYLSIGVLSPRQCWNRLKEEFVDL--LIKPKSGAFSWLNEL 285 + + + P T+ LSPYL G LSPR+ + +KE + KP S + +L Sbjct: 270 FEKPKTSPNSLEPSTTVLSPYLKWGCLSPRKFYYAIKEVYAQQTNCTKP---PVSLMGQL 326 Query: 286 IWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNT 345 IWREF+ + A P+ + P ++ W+++ L AWK+G TG+P IDA M QL T Sbjct: 327 IWREFFYTVAAGTPNFHQMEEN-PICIQVPWDENPEFLAAWKEGRTGYPYIDAIMTQLRT 385 Query: 346 IGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVP 404 GW+H+ R A FL + DL W G+E F LLD D + N W W +S+ Sbjct: 386 EGWIHHLARHSAACFLTRGDLWQSWVKGQEVFDEWLLDADYSLNAANWMWLSSSAFFHQ- 444 Query: 405 YFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIH----APHSWLDKND--LSLNYPL 458 Y+R+++P + GK+ D G +IR ++P LN +P +YI+ AP S + + +YP Sbjct: 445 YYRVYSPVVFGKKTDKTGEYIRKYIPALNKLPAEYIYEPWTAPRSVQEAAGCIIGRDYPR 504 Query: 459 PIVDHKKACHHTLNQYYAAK 478 PIVDH + + A+ Sbjct: 505 PIVDHSIVSKRNIGRMKDAR 524 >gi|148226272|ref|NP_001088990.1| Cry1 protein [Xenopus laevis] gi|49899105|gb|AAH76838.1| Cry1 protein [Xenopus laevis] Length = 556 Score = 150 bits (380), Expect = 4e-34, Method: Compositional matrix adjust. Identities = 100/284 (35%), Positives = 148/284 (52%), Gaps = 28/284 (9%) Query: 206 PMFPIGEQNALHILRKFCKEK--VYYYVEQRDIPA--IQGTSQLSPYLSIGVLSPRQCWN 261 P + GE AL L + +++ V + + + +P + T+ LSPY S G LS R ++ Sbjct: 207 PNWKGGESEALCRLEQHLEKQGWVANFQKPQTVPNSLLPSTTGLSPYFSFGCLSARVFYH 266 Query: 262 RLKEEFVDLLIKPKSGAF---SWLNELIWREFYRHLMAFYPSVC--MGKPFIPWTEKIEW 316 RL ++ + K+ + S +L+WREF+ + P+ +G P +IEW Sbjct: 267 RLS----NIYAQSKNHSLPPVSLQGQLLWREFFYTAASSTPNFTHMVGNPI---CLQIEW 319 Query: 317 NKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK-DLLVDWRIGEEY 375 K+ LQ W++G TGFP IDA M QL+ GW+H+ R A FL + DL + W G + Sbjct: 320 YKNEEQLQKWREGKTGFPWIDAIMAQLHEEGWIHHLARHAVACFLTRGDLWISWEEGMKV 379 Query: 376 FMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNV 435 F LLD D + N G W W +++ Y RIF P G+R DP+G +IR +LP L N Sbjct: 380 FEELLLDADYSINAGNWMWLSASAFFH-HYTRIFCPVRFGRRTDPEGNYIRKYLPVLKNF 438 Query: 436 PTQYIHAPHSWLDKND--------LSLNYPLPIVDHKKACHHTL 471 P +YI+AP W + + +YPLP+VDH A H L Sbjct: 439 PAKYIYAP--WTAPEEIQKQSGCLIGKDYPLPMVDHTTASEHNL 480 >gi|303287382|ref|XP_003062980.1| predicted protein [Micromonas pusilla CCMP1545] gi|226455616|gb|EEH52919.1| predicted protein [Micromonas pusilla CCMP1545] Length = 561 Score = 150 bits (380), Expect = 4e-34, Method: Compositional matrix adjust. Identities = 148/496 (29%), Positives = 215/496 (43%), Gaps = 68/496 (13%) Query: 1 MKATTAMSVH-LVWLRN-DLRITDNKALYAAC-----HNSDAKVIAVFIATP-----EQW 48 M A A S L+W R DLR+ DN + AA + D V+ VF P W Sbjct: 1 MPADDAASARVLLWFRGTDLRLRDNLVVDAASALVASGSGDVDVLPVFCFDPRTFAASAW 60 Query: 49 RQHGISARQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFY 108 R++ F+ S+L +++SL G +D I Y L+ + Sbjct: 61 GTPKTGGRRARFLLESVLDLKRSLRDVGSDLLV-AVGKPEDVIP---RYLLEGGTNVVLT 116 Query: 109 NRQYEINEVRRD-------KLLEKRLQHRVICKS----FDDSVLLPPGSILNHALQMYKV 157 + E R D K+ + R + S DD +P A + Sbjct: 117 QEEVHQEERRVDAAIASAVKIANPKNAMRTVWNSTMYHVDD---IP---FNADASDVPNG 170 Query: 158 YTPFR-KALIQNLVQADLRSLPVPAIRLTGPVTPSNI----PRFFDYPFQAIDPM----- 207 +TPFR K + V+A S A+ L +++ P D PF D Sbjct: 171 FTPFRNKVESKATVRAPAPSPKPGALPLAKASIDASVLEYEPSLDDLPFATEDERARAKA 230 Query: 208 ---------FPIGEQNALHILRKFC--KEKVYYYVEQRD-IPAIQGTSQLSPYLSIGVLS 255 F GE AL + + EK+ Y E R+ + +S+LSP+L+ G +S Sbjct: 231 PTHPNAVLPFEGGETAALARVEYYVWESEKIKTYFETRNGMLGGDYSSKLSPWLAHGCVS 290 Query: 256 PRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFY-----RHLMA-FYPSVCMGKPFIP 309 R +R ++ ++ KS + + ELIWR+F+ +H A F P G+ Sbjct: 291 ARHV-HREVRKYERERVENKS-TYWLIFELIWRDFFIYFAKKHGNAIFTPHGTAGRGGT- 347 Query: 310 WTEKIE-WNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVD 368 WT W D L+AWK+G TGFP++DA MR+L G+M NR R AS+L D VD Sbjct: 348 WTGGAGPWRDDPAALKAWKEGKTGFPLVDANMRELAATGFMSNRGRQNVASWLCLDAGVD 407 Query: 369 WRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHW 428 WR+G EYF S L+D D A+N G W AA V F I Q K +DP G +++ W Sbjct: 408 WRLGAEYFESALIDYDCAANWGNWVSAAGLTGGRVNKFNIAK---QTKDYDPDGRYVKTW 464 Query: 429 LPELNNVPTQYIHAPH 444 +PEL +VP ++ P Sbjct: 465 VPELKDVPKGFVADPR 480 >gi|119502978|ref|ZP_01625063.1| Deoxyribodipyrimidine photolyase [marine gamma proteobacterium HTCC2080] gi|119461324|gb|EAW42414.1| Deoxyribodipyrimidine photolyase [marine gamma proteobacterium HTCC2080] Length = 433 Score = 150 bits (380), Expect = 4e-34, Method: Compositional matrix adjust. Identities = 137/455 (30%), Positives = 204/455 (44%), Gaps = 44/455 (9%) Query: 10 HLVWLRNDLRITDNKALYAACHNSDAKVIAVFI-ATPEQW-RQHGISARQSHFIYASLLQ 67 HL W RNDLR+ DN A+ A H + ++ V++ P W G+ A++ F+ SL + Sbjct: 3 HLHWFRNDLRLRDNPAI--ASHTAADSLLCVYLMPKPRPWCNLVGVGAQRERFLRESLQE 60 Query: 68 VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127 + L+++G + S + + + + + T Q D+ L L Sbjct: 61 LHLQLAEQGQALMVLEGSPELVLPDLVARFAITEVSTTFTPGSQERKTLAYLDQKLPVPL 120 Query: 128 Q-HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRS---LPVPAIR 183 Q HR + L P + + KV++ FR+A+ + V+ S LP P Sbjct: 121 QVHR-------GNSLFEPSDLPFELQDLPKVFSGFRRAVEKLNVRGPSPSTEVLPPPPAA 173 Query: 184 LTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFC--KEKVYYYVEQRD-IPAIQ 240 + P++I + P P G L LR+F + Y E R+ + A+ Sbjct: 174 QFDAIPPADISKPTMLPL-------PGGRSAGLRRLRQFVFDDRSITQYKETRNCLDALD 226 Query: 241 GTSQLSPYLSIGVLSPRQCWN---RLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAF 297 G+S LSP+L+ G LS R+ + R + E + + EL+WREF+ H A Sbjct: 227 GSSTLSPWLANGNLSVREVAHEVFRFERENLS-----NESTYWLFFELLWREFF-HWRAV 280 Query: 298 YPSVCMGKPFIPWTEKIEWNK-DSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMI 356 M K + KI N D W G T FP+++A MRQL GWM NR R I Sbjct: 281 VDDAQMFK-IGGGSGKIRANTFDPRNFARWCAGDTNFPLVNALMRQLVATGWMSNRGRQI 339 Query: 357 TASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGK 416 AS L+ +L VDWR G +F L+D D+ SN G WQ+ A G+D R FN Q Sbjct: 340 AASCLINELKVDWRFGAAFFEKHLIDYDVGSNYGNWQYIAGVGSDPRGG-RHFNIDKQAG 398 Query: 417 RFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND 451 ++DPQG F W + P+Q PH +D D Sbjct: 399 QWDPQGVFTAKW---GGDRPSQ----PHYVIDAAD 426 >gi|257388282|ref|YP_003178055.1| cryptochrome, DASH family [Halomicrobium mukohataei DSM 12286] gi|257170589|gb|ACV48348.1| cryptochrome, DASH family [Halomicrobium mukohataei DSM 12286] Length = 483 Score = 150 bits (380), Expect = 4e-34, Method: Compositional matrix adjust. Identities = 134/497 (26%), Positives = 214/497 (43%), Gaps = 64/497 (12%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHG------ISARQSHF 60 MS LVW R DLR DN L A ++A + P++ G + ++ F Sbjct: 1 MSTVLVWFRRDLRCHDNATLRRAV--AEADTVVPLYCLPDRLTGEGMFGLDRVGPHRAQF 58 Query: 61 IYASLLQVQKSLSQK-----------GIVFQYHQCSNFD-DSIEWLDSYCLQQRVTKLFY 108 + SL +++SL + G V FD D++ W ++R Sbjct: 59 LIESLADLRESLRDRDGELYVRSGDPGTVVP-EAAEEFDADAVYWQALPGPEERDEAGSV 117 Query: 109 NRQYEINEVRRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQN 168 + + L HR D + PP I + +TP++ Sbjct: 118 RAGLADAGIDSETFWTHTLYHR-------DDLPRPPDEIED-------TFTPWKDRTEAK 163 Query: 169 LVQADLRSLP----VPAIRLTGPVTPSNIPRFFDYPFQAIDPM--------FPIGEQNAL 216 + P P ++P D+ F + + GE L Sbjct: 164 ATVRPPKPAPEWVHAPNGGRRASSGADDLPTLADFGFGEDEATVDDRGVLDWTGGETAGL 223 Query: 217 HILRKFCKEK--VYYYVEQRD-IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIK 273 + + E+ + Y E R+ + +S+ SP+LS G LSPRQ +++ D + Sbjct: 224 DRVATYVWERDCLREYRETRNGLVGADYSSKFSPWLSFGCLSPRQIHREVEQYETDRV-- 281 Query: 274 PKSGAFSWLN-ELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTG 332 ++ + WL EL WR+F+++ +A Y + I + I W +D + W +G TG Sbjct: 282 -ENDSTYWLVFELTWRDFFQYQLAKYGAKWFQPGGIRDRDDIRWRRDRAQFERWARGETG 340 Query: 333 FPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGW 392 P +DA MR+LN G++ NR R ASFL +L +DWR+G YF S+L+D D+ASN W Sbjct: 341 IPFVDANMRELNATGYVSNRGRQNVASFLSNNLRIDWRLGAAYFESRLVDYDVASNWCNW 400 Query: 393 QWAASTGNDSV-PYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAP-----HSW 446 + + GNDS YF I Q +DP+G ++ W PEL+ +P +Y+H P H Sbjct: 401 AYQSQVGNDSRDSYFEIVG---QATHYDPEGAYVTRWCPELSALPPEYVHEPWTMSEHEQ 457 Query: 447 LDKN-DLSLNYPLPIVD 462 D +L +YP P++D Sbjct: 458 ADYGVELGTDYPAPMID 474 >gi|145341190|ref|XP_001415696.1| predicted protein [Ostreococcus lucimarinus CCE9901] gi|144575919|gb|ABO93988.1| predicted protein [Ostreococcus lucimarinus CCE9901] Length = 551 Score = 150 bits (380), Expect = 4e-34, Method: Compositional matrix adjust. Identities = 141/511 (27%), Positives = 223/511 (43%), Gaps = 70/511 (13%) Query: 1 MKATTAMSVHLVWLRNDLRITDNKALYAAC---HNSDAKVIA---VFIATPEQWRQHGIS 54 M ++ + +VW RNDLR+ DN + A SDA + VF T + + G++ Sbjct: 1 MATSSPRTRVIVWFRNDLRLLDNAVVARAAALRGQSDAAEVVPVYVFDETFFKTSKRGLA 60 Query: 55 ---ARQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQ 111 A + F + ++++L G +C +D I L + T + + Sbjct: 61 RFGAGRGKFTIECVDDLKRALRGVGSDLLV-RCGKTEDVITELTLTGANDK-TIVLTQTE 118 Query: 112 YEINEVRRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMY-----------KVYTP 160 E D+ +E+ + R S+ GS L HA + V+TP Sbjct: 119 VTSEETDMDRAVERASKERARSGGASASMERLWGSTLYHADDLPYDFAGGLHDLPDVFTP 178 Query: 161 FRKALIQNLVQADLRSL-PVPAIRLTGPVTPSN-----IPRFFDYPFQA--IDPM----- 207 FR + + +R++ P P G V S +P D PF + I P Sbjct: 179 FRNKVES---KCSVRAVVPAPTANALGSVPASVAGLDWMPEPKDLPFASAEIAPACEKWL 235 Query: 208 -----------FPIGEQNALHILRKFCKEK---VYYYVEQRDIPAIQGTSQLSPYLSIGV 253 F GE AL ++ + + Y+ + + +++L+P+L++G Sbjct: 236 KDGADERSVLEFKGGESQALARVKYYLWDSDLLATYFETRNGMLGGDYSTKLAPWLALGC 295 Query: 254 LSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPF---IPW 310 +SPR + ++ + ++ KS + + ELIWR+F++ F+ K F Sbjct: 296 VSPRYVVSEIRR-YESARVENKS-TYWVIFELIWRDFFK----FFALKHGNKIFHLDGTA 349 Query: 311 TEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWR 370 W D +L+AWK G TG+P+IDA MR+L G+M NR R AS+L D VDWR Sbjct: 350 NRTASWKSDEKILKAWKTGTTGYPLIDANMRELAATGFMSNRGRQNVASWLALDAGVDWR 409 Query: 371 IGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLP 430 G ++F LLD D ASN G W AA + F I Q K +DP G +++ W+P Sbjct: 410 HGADWFEHHLLDYDTASNWGNWCAAAGMTGGRINRFNIAK---QTKDYDPSGDYVKRWIP 466 Query: 431 ELNNVPTQYI----HAPHSWLDKNDLSLNYP 457 EL +P YI AP D+ +SL+YP Sbjct: 467 ELREIPAAYITEPNQAPRELRDR--ISLDYP 495 >gi|28279917|gb|AAH44204.1| Cry5 protein [Danio rerio] Length = 545 Score = 150 bits (379), Expect = 4e-34, Method: Compositional matrix adjust. Identities = 147/502 (29%), Positives = 222/502 (44%), Gaps = 64/502 (12%) Query: 2 KATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFI 61 KATT + W R LR+ DN AL AA + + +F+ P + I + F+ Sbjct: 23 KATTMSHNTIHWFRKGLRLHDNPALIAALKDC-RHIYPLFLLDPWFPKNTRIGINRWRFL 81 Query: 62 YASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDK 121 +L + SL + + S E L Q ++T+L + E RDK Sbjct: 82 IEALKDLDSSLKKLNSRLFVVRGS----PTEVLPKLFKQWKITRLTFEVDTEPYSQSRDK 137 Query: 122 LLEKRLQHRVICKSFDDSVLLPPGSIL---NHALQMYKVYTPFRKALIQNLVQA---DLR 175 + K + K + V L + + TP +Q++V+A + Sbjct: 138 EVMK------LAKEYGVEVTPKISHTLYNIDRIIDENNGKTPMTYIRLQSVVKAMGHPKK 191 Query: 176 SLPVPAIR-LTGPVTPSN--------IPRFFDYPF--QAIDP-MFPIGEQNALHILRKFC 223 +P P + G TP + IP D ++ P +FP GEQ AL L + Sbjct: 192 PIPAPTNEDMRGVSTPLSDDHEEKFGIPTLEDLGLDTSSLGPHLFPGGEQEALRRLDEHM 251 Query: 224 KEK--VYYYVEQRDIPA--IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGA- 278 + V + + + P I T+ LSPY+ G LS R W RL + + K S Sbjct: 252 ERTNWVCKFEKPKTSPNSLIPSTTVLSPYVRFGCLSARIFWWRLADVYRG---KTHSDPP 308 Query: 279 FSWLNELIWREFYRHLMAFYP--------SVCMGKPFIPWTEKIEWNKDSHLLQAWKQGY 330 S +L+WREF+ P S C+ +++W+ + L AW++ Sbjct: 309 VSLHGQLLWREFFYTTAVGIPNFNKMEGNSACV---------QVDWDNNPEHLAAWREAR 359 Query: 331 TGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNN 389 TGFP IDA M QL GW+H+ R A FL + DL + W G++ F LLD D + N Sbjct: 360 TGFPFIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWISWEEGQKVFEELLLDSDWSLNA 419 Query: 390 GGWQW-AASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIH----APH 444 G WQW +AST YFR+++P GK+ D G +I+ +LP L PT+YI+ AP Sbjct: 420 GNWQWLSASTFFHQ--YFRVYSPIAFGKKTDKHGDYIKKYLPVLKKFPTEYIYEPWKAPR 477 Query: 445 SWLDKND--LSLNYPLPIVDHK 464 S ++ + +YP PIVDH+ Sbjct: 478 SVQERAGCIVGKDYPRPIVDHE 499 >gi|298708262|emb|CBJ48325.1| cryptochrome 2 [Ectocarpus siliculosus] Length = 571 Score = 150 bits (379), Expect = 5e-34, Method: Compositional matrix adjust. Identities = 101/311 (32%), Positives = 158/311 (50%), Gaps = 28/311 (9%) Query: 156 KVYTPFRKALIQNL---------VQADLRSLPVPAIRLTGPVT-PSNIPR-----FFDYP 200 +++T FRK++ + + R +P + G + P IP P Sbjct: 188 EIFTQFRKSVESKYSCKMRPPVPLPSPFRPVPTGTTQDDGEASAPGAIPTTEELGLGTAP 247 Query: 201 FQAIDPMFPI--GEQNALHILRKFC--KEKVYYYVEQRDIPAIQG-TSQLSPYLSIGVLS 255 + +FP GE L ++ + ++++ Y R+ G +S+ SP+L++G LS Sbjct: 248 ERDARSVFPFNGGETAGLRRVQSYIWDEDRLREYKVTRNGLLGSGFSSKFSPWLALGCLS 307 Query: 256 PRQCWNRLKEEFVDLLIKPKSGAFSWL-NELIWREFYRHLMAFYPSVC--MGKPFIPWTE 312 PR +++ D + + WL EL+WR+F+R+ + +G P T Sbjct: 308 PRTIVKEIRKYETDRIANDST---YWLIFELLWRDFFRYSAVKNGNSIFHLGGPRRD-TG 363 Query: 313 KIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIG 372 + W D+ L+AWK+G TG+P+IDA MR+L G+M NR R + ASF +DL +DWR+G Sbjct: 364 RQRWLDDAGSLEAWKEGETGYPLIDANMRELKASGFMSNRGRQVVASFFTRDLQMDWRLG 423 Query: 373 EEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPEL 432 E+F LLD D ASN G W + A G+D R FN Q K +D +G ++RHWLPEL Sbjct: 424 AEHFEEYLLDHDPASNWGNWNYVAGVGSDPREG-RYFNIEKQAKTYDAEGAYMRHWLPEL 482 Query: 433 NNVPTQYIHAP 443 +PT + P Sbjct: 483 AALPTTALQTP 493 >gi|255553063|ref|XP_002517574.1| DNA photolyase, putative [Ricinus communis] gi|223543206|gb|EEF44738.1| DNA photolyase, putative [Ricinus communis] Length = 537 Score = 150 bits (378), Expect = 6e-34, Method: Compositional matrix adjust. Identities = 150/513 (29%), Positives = 224/513 (43%), Gaps = 63/513 (12%) Query: 8 SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWR-----------QHGISAR 56 S L+W R LR+ DN AL A S V VF+ P + GI+ Sbjct: 6 SSSLMWFRKGLRVHDNPALDYASKGSKF-VYPVFVIDPHYMEPDPNAFSPGSSRAGIN-- 62 Query: 57 QSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINE 116 + F+ SL+ + SL + G + I L + +++ + + Y+ + Sbjct: 63 RIRFLLESLVDLDLSLKKLGSKLLVLRGEPSQVLIRCLKIWDVEKLCFEYDTDSYYQALD 122 Query: 117 VRRDKLLEKRLQHRVICKSFDDSVLLPPGSIL-NHALQMYKVYTPFRKALIQ-----NLV 170 K+ E R+ S L P I+ + + Y F K Q + + Sbjct: 123 A---KVKEYASSARIEVFSPVSHTLFNPADIIQKNGGKPPLSYQSFLKVAGQPSWASSPL 179 Query: 171 QADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAID----PMFPIGEQNALHILRKFC--K 224 + SLP + G S +P + + ++ F GE AL LR+ K Sbjct: 180 PTTISSLP--PVGDVGSCEISEVPTLEELGYGDVEQDEWAPFRGGESEALKRLREKITNK 237 Query: 225 EKVYYYVEQRDIPAI---QGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSW 281 E V + + + P+ T+ LSPYL G LS R + L++ + ++ K S S Sbjct: 238 EWVANFEKPKGDPSAFMKPATTVLSPYLKFGCLSSRYFYQCLQDVYKNV-GKHTSPPVSL 296 Query: 282 LNELIWREFYRHLMAFYPSVCMGKPFIPW------TEKIEWNKDSHLLQAWKQGYTGFPI 335 L +L+WR+F FY +V G P ++I WN+D LL AW++ TG+P Sbjct: 297 LGQLLWRDF------FY-TVAFGTPNFDQMKENRICKQIPWNEDDELLSAWREARTGYPW 349 Query: 336 IDAAMRQLNTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQW 394 IDA M QL GWMH+ R A FL + DL V W G F L+D D A NNG W W Sbjct: 350 IDAIMVQLRKWGWMHHLARHCVACFLTRGDLFVHWEKGRNVFERLLIDSDWAINNGNWLW 409 Query: 395 AASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWL------- 447 S + Y RI++P GK++DP G +I+H+LP L ++P +YI+ P W Sbjct: 410 -LSCSSFFYQYNRIYSPISFGKKYDPNGNYIKHFLPVLKDMPKEYIYEP--WTAPLSVQT 466 Query: 448 -DKNDLSLNYPLPIVDH---KKACHHTLNQYYA 476 K + +YP P+V H K C L + YA Sbjct: 467 KAKCIIGRDYPKPVVAHDSASKECKKKLAESYA 499 >gi|326437928|gb|EGD83498.1| DNA photolyase [Salpingoeca sp. ATCC 50818] Length = 540 Score = 150 bits (378), Expect = 6e-34, Method: Compositional matrix adjust. Identities = 143/522 (27%), Positives = 219/522 (41%), Gaps = 64/522 (12%) Query: 6 AMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASL 65 A+S+H W R LR+ DN AL AA + +V VF+ P + + + +F+ SL Sbjct: 5 AVSIH--WFRKGLRLHDNAALLAALKGAK-QVYPVFVLDPHFAKPEFVGVVRYNFLLESL 61 Query: 66 LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125 + KSL G + ++ L+ + VT+L + R E RD Sbjct: 62 RDLDKSLRTLGSRLYVLK----GKPLQALEEKFKEWEVTRLTFERDTEPYAKLRD----- 112 Query: 126 RLQHRVICKSFDDSVLLPPGSILNHALQ-MYKVYTPFRKALIQNLVQADLRSLPVPAIRL 184 Q R + + V+ G L+ Q + K + L + R L L Sbjct: 113 -TQARELAEKHGIEVITTVGHTLHDPEQYIAKAGGADKIPLTYSSFGTLFRRLGKVPAAL 171 Query: 185 TGPVTPS------------------NIPRFFDYPFQAIDP----MFPIGEQNALHILRKF 222 + P ++P D ++ D FP GE AL +R+ Sbjct: 172 SAPTKEDFPQSSTLVRTDALDDHRFDVPSLKDMGYEWNDDEHEVRFPGGETEALERMRRH 231 Query: 223 CKEKVY--YYVEQRDIPAI--QGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGA 278 + K + ++ + + P T+ LSPYL G LSPR ++ L + + K Sbjct: 232 LQRKAWIAHFEKPKTSPNTLEPSTTGLSPYLKFGCLSPRLFYHELARVYAEYRDHAKP-P 290 Query: 279 FSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDA 338 S +L+WREF+ H+ + +I+W+ + LL AW+ TG+P IDA Sbjct: 291 VSLHGQLLWREFF-HMCGYAVKNFDRMEGNRICRQIDWDTNDALLAAWENARTGYPWIDA 349 Query: 339 AMRQLNTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAAS 397 M QL GW+H+ R A FL + DL W G + F L+D D N+ W W S Sbjct: 350 CMTQLRREGWLHHLARHAVACFLTRGDLYQSWEKGAQVFDRLLVDADWHLNSANWMW-LS 408 Query: 398 TGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND------ 451 + YFR+++P GK+ DP G +IR +LP+L P +YI+ P W Sbjct: 409 CSSFFYQYFRVYSPVAFGKKTDPSGAYIRKYLPQLKAFPDKYIYEP--WKAPPGVQRSCG 466 Query: 452 --LSLNYPLPIVDHK----------KACHHTLNQYYAAKKQS 481 + +YP PIVDH +AC+ L Q AKK + Sbjct: 467 CIIGKDYPEPIVDHAEVSAANKARIRACYDALKQAEKAKKTT 508 >gi|167526345|ref|XP_001747506.1| hypothetical protein [Monosiga brevicollis MX1] gi|163773952|gb|EDQ87586.1| predicted protein [Monosiga brevicollis MX1] Length = 486 Score = 150 bits (378), Expect = 6e-34, Method: Compositional matrix adjust. Identities = 133/475 (28%), Positives = 214/475 (45%), Gaps = 52/475 (10%) Query: 5 TAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYAS 64 ++ S+ L W R R+ DN AL+ A + +V VF+ P + + + +F+ S Sbjct: 2 SSSSISLHWFRKGQRLHDNPALWRALRGA-TQVYPVFVIDPHFAKPENVGVLRYNFLLES 60 Query: 65 LLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLE 124 L + + L +G+ + + + E L + +VT+L Y E RD + Sbjct: 61 LKDLDEQL--RGLGSRLYVLRGKPE--EQLPKKFKEWKVTRLTYELDTEPYARVRDAAIN 116 Query: 125 KRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL 184 + K + V+ G +L H + Y +K + + D +S VP ++ Sbjct: 117 D------LAKKHNVEVIAEAGHML-HDPESY-----LKKCGGASKDRQD-KSYDVPTLKE 163 Query: 185 TGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEK--VYYYVEQRDIPAI--Q 240 G +P P+ +FP GE+ AL L F K+K + + + + PA Sbjct: 164 MG-YSPIKAPQMV---------LFPGGEREALKRLEHFIKKKNWIATFEKPKTNPAALDP 213 Query: 241 GTSQLSPYLSIGVLSPRQCW---NRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAF 297 T+ LSPY+ +G LS R+ W ++ +E D P+S +L++RE + HL + Sbjct: 214 DTTGLSPYMKMGCLSVRKFWYDVQKVYDEKKDHSTPPES----LHGQLLFRELF-HLCGY 268 Query: 298 YPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMIT 357 +I+W+ L AW+ TG+P IDA M QL GWMH+ R Sbjct: 269 AVKNFDKMKGNRICRQIDWDYSEKFLDAWENSKTGYPWIDACMAQLRHEGWMHHLARHAV 328 Query: 358 ASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGK 416 A FL + DL W G F L+D D NN W W S + YFR+++P G+ Sbjct: 329 ACFLTRGDLYQSWEHGARIFEKHLVDADWHLNNANWMW-LSCSSFFYQYFRVYSPIGFGQ 387 Query: 417 RFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND--------LSLNYPLPIVDH 463 ++D +G FIR +LP L ++P +YI+ P W + + +YP PIVDH Sbjct: 388 KYDKEGAFIRKYLPVLKDMPKKYIYEP--WKAPKEVQQKAKCIIGKDYPEPIVDH 440 >gi|194332801|ref|NP_001123706.1| hypothetical protein LOC100170456 [Xenopus (Silurana) tropicalis] gi|189442599|gb|AAI67313.1| LOC100170456 protein [Xenopus (Silurana) tropicalis] Length = 557 Score = 149 bits (377), Expect = 7e-34, Method: Compositional matrix adjust. Identities = 100/279 (35%), Positives = 146/279 (52%), Gaps = 28/279 (10%) Query: 211 GEQNALHILRKFCKEK--VYYYVEQRDIPA--IQGTSQLSPYLSIGVLSPRQCWNRLKEE 266 GE AL L + +++ V + + + IP + T+ LSPY S+G LS R ++RL Sbjct: 212 GESEALSRLEQHLEKQGWVANFKKPQTIPNSLLPSTTGLSPYFSLGCLSVRVFFHRLS-- 269 Query: 267 FVDLLIKPKSGAF---SWLNELIWREFYRHLMAFYPSVC--MGKPFIPWTEKIEWNKDSH 321 ++ + K+ + S +L+WREF+ + + P+ +G P +I+W K+ Sbjct: 270 --NIYAQSKNHSLPPVSLQGQLLWREFFYTVASSTPNFTHMVGNPI---CLQIDWYKNEE 324 Query: 322 LLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQL 380 LQ WK+ TGFP IDA M QL+ GW+H+ R A FL + DL + W G + F L Sbjct: 325 QLQKWKEAKTGFPWIDAIMTQLHNEGWIHHLARHAVACFLTRGDLWISWEEGMKVFEEFL 384 Query: 381 LDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYI 440 LD D N G W W +++ Y RIF P GKR DP+G +IR +LP L N P +YI Sbjct: 385 LDADYCINAGNWMWLSASAFFH-HYTRIFCPVRFGKRSDPEGNYIRKYLPVLKNFPAKYI 443 Query: 441 HAPHSWLDKND--------LSLNYPLPIVDHKKACHHTL 471 + P W + + +YPLP+VDHK A H L Sbjct: 444 YEP--WTAPEEIQKQAGCLIGKDYPLPMVDHKTASEHNL 480 >gi|327282060|ref|XP_003225762.1| PREDICTED: cryptochrome-1-like [Anolis carolinensis] Length = 530 Score = 149 bits (377), Expect = 7e-34, Method: Compositional matrix adjust. Identities = 141/509 (27%), Positives = 224/509 (44%), Gaps = 65/509 (12%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 +S+H W R LR+ DN AL AA NS A++ +FI P + +S + F+ SL Sbjct: 4 VSIH--WFRKGLRLHDNPALLAAMKNS-AEIYPIFILDPWFPKNMQVSINRWRFLIESLK 60 Query: 67 QVQKSLSQ---KGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLL 123 + +SL + + V + F + + +VT+L + E R +++ Sbjct: 61 DLDESLKKLNSRLFVVRGRPAEVFPELF-------TKWKVTRLAFEVDTEPYARRDAEVV 113 Query: 124 EKRLQHRV-ICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQA-DLRSLPVPA 181 +H V + + ++ I+ ++ + YT +Q LV + PVPA Sbjct: 114 RLAAEHGVQVIQKVSHTLYDTERIIVENSGKAPLTYT-----RLQTLVASLGPPKQPVPA 168 Query: 182 IRLTG---PVTPSNIPRFFDY-----------PFQAIDPMFPIGEQNALHILRKFCKEKV 227 +L TP +Y P A ++P GE AL L K Sbjct: 169 PKLEDMKDCCTPVKEDHDLEYGTPSYEELGQDPKTAGPHLYPGGETEALARLDLHMKRTS 228 Query: 228 ----YYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLN 283 + E T+ LSPY+ G LS R W +L E + K S Sbjct: 229 WVCNFKKPETHPNSLTPSTTVLSPYVKFGCLSVRMFWWKLAEVYQGR--KHSDPPVSLHG 286 Query: 284 ELIWREFYRHLMAFYPS--------VCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPI 335 +L+WREF+ A P+ VC+ +++W+ + L+AW++G TG+P Sbjct: 287 QLLWREFFYTAGAGIPNFDRMENNPVCV---------QVDWDNNQEYLRAWREGQTGYPF 337 Query: 336 IDAAMRQLNTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQW 394 IDA M QL T GW+H+ R A FL + DL + W G++ F LLD D + N WQW Sbjct: 338 IDAIMTQLRTEGWIHHLARHAVACFLTRGDLWISWEEGQKVFEELLLDADWSLNAANWQW 397 Query: 395 AASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIH----APHSWLDKN 450 +++ +FR+++P GK+ D G +I+ +LP L YI+ AP S ++ Sbjct: 398 LSASAFFHQ-FFRVYSPVTFGKKTDKNGEYIKKYLPFLRKFSNDYIYEPWKAPRSLQERA 456 Query: 451 D--LSLNYPLPIVDHKKACHHTLNQYYAA 477 + +YP PIV+H+K L + AA Sbjct: 457 GCIIGQDYPKPIVEHEKVYKRNLERMKAA 485 >gi|255084421|ref|XP_002508785.1| predicted protein [Micromonas sp. RCC299] gi|226524062|gb|ACO70043.1| predicted protein [Micromonas sp. RCC299] Length = 566 Score = 149 bits (377), Expect = 8e-34, Method: Compositional matrix adjust. Identities = 94/249 (37%), Positives = 128/249 (51%), Gaps = 20/249 (8%) Query: 242 TSQLSPYLSIGVLSPRQCWNRLKEEF-VDLLIKPKSGAFSWLNELIWREFYRHLMAFYPS 300 T+ LSPYL G +SPR W+ L+ V+L K S +L+WREFY +A Y + Sbjct: 300 TTALSPYLKFGCVSPRTFWHELRAVLDVELGGKHSKPPESLEGQLLWREFY--YLAGYGT 357 Query: 301 VC---MGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMIT 357 M I +I W D L AW++ TGFP IDA M QL GWMH+ R Sbjct: 358 PNYDRMAGNRI--CRQIPWTWDEERLAAWEESRTGFPWIDACMMQLKQEGWMHHLARHAV 415 Query: 358 ASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGK 416 A FL + DL V W G F +L+D D A NNG W W S YFR++ P GK Sbjct: 416 ACFLTRGDLFVHWEAGAAVFDRELVDADWALNNGNWMW-LSCSCFFYQYFRVYGPVSFGK 474 Query: 417 RFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND--------LSLNYPLPIVDHKKACH 468 ++D +G +IR +LP+L ++P +YI+ P W + + ++YP PIVDH A Sbjct: 475 KYDKEGAYIRKYLPQLKDMPAKYIYEP--WTAPIEVQRKAGCVVGVDYPAPIVDHAVASK 532 Query: 469 HTLNQYYAA 477 + + AA Sbjct: 533 ECIEKIAAA 541 Score = 41.6 bits (96), Expect = 0.33, Method: Compositional matrix adjust. Identities = 31/114 (27%), Positives = 47/114 (41%), Gaps = 6/114 (5%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 ++W R LR+ DN AL AC + A V VF+ P + + A + F+ SL + Sbjct: 7 ILWFRKGLRVHDNPALVKACEGASA-VQPVFVLDPWFIKPERVGANRLRFLLESLTDLDA 65 Query: 71 SLSQKG---IVFQYHQCSNFDDSIE-W-LDSYCLQQRVTKLFYNRQYEINEVRR 119 SL +G +V ++E W D C + R +NE R Sbjct: 66 SLRARGSSLLVLHGDPARVIPAALEAWRCDRLCYEFDTEPYAQKRDASVNEAAR 119 >gi|18858471|ref|NP_571862.1| cryptochrome 4 [Danio rerio] gi|8698594|dbj|BAA96851.1| cryptochrome 4 [Danio rerio] Length = 558 Score = 149 bits (377), Expect = 8e-34, Method: Compositional matrix adjust. Identities = 106/316 (33%), Positives = 156/316 (49%), Gaps = 47/316 (14%) Query: 188 VTPSNIPRFFDYPFQA-------IDPMFPIGEQNALHILRKFCKEK--VYYYVEQRDIP- 237 VTP ++ R + P A + ++P GE +AL L K + + V + + R IP Sbjct: 180 VTPVDVDRVYAVPSLAHLGLQVEAEVLWPGGESHALQRLEKHFQSQGWVANFSKPRTIPN 239 Query: 238 -AIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAF---SWLNELIWREFYRH 293 + T+ LSPYLS+G LS R ++RL + + K+ + S +++WREF+ Sbjct: 240 SLLPSTTGLSPYLSLGCLSVRTFYHRLN----CIYAQSKNHSLPPVSLQGQVLWREFFYT 295 Query: 294 LMAFYP--------SVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNT 345 + + P S+C+ +I+W D L+ W+ TGFP IDA M QL Sbjct: 296 VASATPNFTKMEGNSICL---------QIDWYHDPERLEKWRTAQTGFPWIDAIMTQLLQ 346 Query: 346 IGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVP 404 GW+H+ R A FL + DL + W G + F LLD D + N G W W +++ Sbjct: 347 EGWIHHLARHAVACFLTRGDLWISWEEGMKVFEEFLLDADYSVNAGNWMWLSASAFFH-K 405 Query: 405 YFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSL--------NY 456 Y RIF P G+R DPQG ++R +LP L N P+QYI+ P W D+ L +Y Sbjct: 406 YTRIFCPVRFGRRTDPQGEYLRKYLPVLKNFPSQYIYEP--WKAPEDVQLSAGCIIGKDY 463 Query: 457 PLPIVDHKKACHHTLN 472 P PIV H +A L Sbjct: 464 PRPIVSHIEASQRNLE 479 >gi|326501158|dbj|BAJ98810.1| predicted protein [Hordeum vulgare subsp. vulgare] Length = 583 Score = 149 bits (377), Expect = 8e-34, Method: Compositional matrix adjust. Identities = 116/357 (32%), Positives = 176/357 (49%), Gaps = 28/357 (7%) Query: 131 VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT- 189 ++ +SF+ +L P + + Q + ++ PF + LP I +G ++ Sbjct: 7 IVVQSFNADLLYDPWEVNDDDGQPFNMFMPFWNRCLSMPYDPPAPLLPPKRIN-SGDLSM 65 Query: 190 -PSNIPRFFDYPFQAIDPMFP----IGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244 PS+ F D + + + G QNA L F + Y R TS Sbjct: 66 CPSDDLIFEDESERGSNALLARAWSPGWQNADKALSAFLNGPLIDYSVNRKKADSANTSL 125 Query: 245 LSPYLSIGVLSPRQCWN--RLKEEFVDLLIKPKSGAFS-------WLNELIWREFYRHLM 295 LSPYL G LS R+ ++ R+K+ L+ G + +L + RE+ R+L Sbjct: 126 LSPYLHFGELSVRKVFHLVRMKQ-----LVWSNEGNHAAEESCTLFLRSVGLREYSRYLC 180 Query: 296 AFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRM 355 +P KP + W D + W+QG TG+P++DA MR+L GW+H+R+R+ Sbjct: 181 FNHP-CSHEKPLLAHLRFFPWVVDESTFKFWRQGRTGYPLVDAGMRELWATGWLHDRIRV 239 Query: 356 ITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQG 415 + +SF VK L + WR G +YF LLD DL S+ GWQ+ + + DS I NP ++G Sbjct: 240 VVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGSLPDSRELDHIDNPQLEG 299 Query: 416 KRFDPQGTFIRHWLPELNNVPTQYIH----APHSWLDKNDLSL--NYPLPIVDHKKA 466 +FDP G ++R WLPEL +PT++IH AP S L + L NYPLPIV+ A Sbjct: 300 YKFDPHGEYVRRWLPELARLPTEWIHHPWDAPASVLQAAGVELGSNYPLPIVELDTA 356 >gi|225011847|ref|ZP_03702285.1| cryptochrome, DASH family [Flavobacteria bacterium MS024-2A] gi|225004350|gb|EEG42322.1| cryptochrome, DASH family [Flavobacteria bacterium MS024-2A] Length = 433 Score = 149 bits (376), Expect = 9e-34, Method: Compositional matrix adjust. Identities = 120/442 (27%), Positives = 197/442 (44%), Gaps = 34/442 (7%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQ-----WRQHGISARQSHFI 61 M LVWLRNDLR D + + AC + +V+A F P+ W ++HF+ Sbjct: 1 MKTALVWLRNDLRFEDQNSFFTACQEHE-RVVAYFSFEPKDYDKTMWGFTKTGKFRTHFL 59 Query: 62 YASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDK 121 +L +Q L K I S WLD Q + T LF+ ++ E Sbjct: 60 LETLRSLQTELENKNISLIVENRSAATGIPFWLD----QLKATALFFQEEWTFEEKMISD 115 Query: 122 LLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLR-SLPVP 180 + ++ + + S D L P + + KV+T FRK + +++R P Sbjct: 116 AVVNQISNDINVYSHYDQFLYHPEDVSMEIQSIPKVFTEFRKKCEK---FSNIRPCFSAP 172 Query: 181 AIRLTGPV---TPSNIPRFFDYPFQAI----DPMFPIGE---QNALHILRKFCKEK-VYY 229 + + TP+ +P D+ F + FP H+ F K + Y Sbjct: 173 KVLNKSSLLSETPA-MPVLEDFEFTPFTHHANSAFPFKGGMVSGNDHLQNYFWNTKRLSY 231 Query: 230 YVEQRD-IPAIQGTSQLSPYLSIGVLSPRQC-WNRLKEEFVDLLIKPKSGAFSWLNELIW 287 Y + R+ + + +S+ SP+L+ G LS R W ++ E +K + + EL+W Sbjct: 232 YKQTRNGLVGVGYSSKFSPWLANGSLSARVIYWEVMRYE---KEVKKNESTYWLIFELLW 288 Query: 288 REFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIG 347 R++++++ + + I ++ WN W +G T P ++A M +L G Sbjct: 289 RDYFKYISLKHGNSIFHLGGIL-KKEYTWNSKQEDFLKWVEGETAEPFVNANMIELKKTG 347 Query: 348 WMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFR 407 +M NR R AS+ K++++DWR+G YF QL+D D+ SN G W + A GND P R Sbjct: 348 FMSNRGRQNVASYFAKNMMMDWRMGAAYFERQLVDYDVHSNWGNWMYVAGVGND--PRDR 405 Query: 408 IFNPTIQGKRFDPQGTFIRHWL 429 FN +Q +R+D G + WL Sbjct: 406 KFNIKLQAERYDSNGKYQNLWL 427 >gi|228312124|pdb|3FY4|A Chain A, (6-4) Photolyase Crystal Structure gi|228312125|pdb|3FY4|B Chain B, (6-4) Photolyase Crystal Structure gi|228312126|pdb|3FY4|C Chain C, (6-4) Photolyase Crystal Structure gi|2804280|dbj|BAA24449.1| 6-4 photolyase [Arabidopsis thaliana] gi|3929918|dbj|BAA34711.1| 6-4 photolyase [Arabidopsis thaliana] gi|11994334|dbj|BAB02293.1| 6-4 photolyase [Arabidopsis thaliana] Length = 537 Score = 149 bits (376), Expect = 9e-34, Method: Compositional matrix adjust. Identities = 149/518 (28%), Positives = 230/518 (44%), Gaps = 65/518 (12%) Query: 8 SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67 S L+W R LR+ DN AL A S+ + VF+ P H++ + Sbjct: 5 SGSLIWFRKGLRVHDNPALEYASKGSEF-MYPVFVIDP-------------HYMESDPSA 50 Query: 68 VQKSLSQKG---IVFQYHQCSNFDDSIEWLDSY--------------CLQQ-RVTKLFYN 109 S+ G I F + D S++ L S CLQ+ +V +L + Sbjct: 51 FSPGSSRAGVNRIRFLLESLKDLDSSLKKLGSRLLVFKGEPGEVLVRCLQEWKVKRLCFE 110 Query: 110 RQ----YEINEVR-RDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKA 164 Y+ +V+ +D ++ + ++ P I + + Y F K Sbjct: 111 YDTDPYYQALDVKVKDYASSTGVE---VFSPVSHTLFNPAHIIEKNGGKPPLSYQSFLKV 167 Query: 165 LIQ-NLVQADL--RSLPVPAIRLTGPVTPSNIPRFFDYPF----QAIDPMFPIGEQNALH 217 + + +++L +P I G + S +P + + QA F GE AL Sbjct: 168 AGEPSCAKSELVMSYSSLPPIGDIGNLGISEVPSLEELGYKDDEQADWTPFRGGESEALK 227 Query: 218 ILRKFCKEK--VYYYVEQRDIPAI---QGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLI 272 L K +K V + + + P+ T+ +SPYL G LS R + L+ + D+ Sbjct: 228 RLTKSISDKAWVANFEKPKGDPSAFLKPATTVMSPYLKFGCLSSRYFYQCLQNIYKDVK- 286 Query: 273 KPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTG 332 K S S L +L+WREF+ + AF ++I WN+D +L AW+ G TG Sbjct: 287 KHTSPPVSLLGQLLWREFF-YTTAFGTPNFDKMKGNRICKQIPWNEDHAMLAAWRDGKTG 345 Query: 333 FPIIDAAMRQLNTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGG 391 +P IDA M QL GWMH+ R A FL + DL + W G + F L+D D A NNG Sbjct: 346 YPWIDAIMVQLLKWGWMHHLARHCVACFLTRGDLFIHWEQGRDVFERLLIDSDWAINNGN 405 Query: 392 WQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIH----APHSWL 447 W W S + + RI++P GK++DP G +IRH+LP L ++P QYI+ AP S Sbjct: 406 WMW-LSCSSFFYQFNRIYSPISFGKKYDPDGKYIRHFLPVLKDMPKQYIYEPWTAPLSVQ 464 Query: 448 DKND--LSLNYPLPIVDH---KKACHHTLNQYYAAKKQ 480 K + + +YP P+V H K C + + YA K+ Sbjct: 465 TKANCIVGKDYPKPMVLHDSASKECKRKMGEAYALNKK 502 >gi|18400841|ref|NP_566520.1| UVR3 (UV REPAIR DEFECTIVE 3); DNA (6-4) photolyase [Arabidopsis thaliana] gi|306756349|sp|O48652|UVR3_ARATH RecName: Full=(6-4)DNA photolyase; AltName: Full=Protein UV repair defective 3 gi|332642182|gb|AEE75703.1| (6-4)DNA photolyase [Arabidopsis thaliana] Length = 556 Score = 149 bits (376), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 149/525 (28%), Positives = 232/525 (44%), Gaps = 65/525 (12%) Query: 1 MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHF 60 + + S L+W R LR+ DN AL A S+ + VF+ P H+ Sbjct: 17 ITSMATGSGSLIWFRKGLRVHDNPALEYASKGSEF-MYPVFVIDP-------------HY 62 Query: 61 IYASLLQVQKSLSQKG---IVFQYHQCSNFDDSIEWLDSY--------------CLQQ-R 102 + + S+ G I F + D S++ L S CLQ+ + Sbjct: 63 MESDPSAFSPGSSRAGVNRIRFLLESLKDLDSSLKKLGSRLLVFKGEPGEVLVRCLQEWK 122 Query: 103 VTKLFYNRQ----YEINEVR-RDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKV 157 V +L + Y+ +V+ +D ++ + ++ P I + + Sbjct: 123 VKRLCFEYDTDPYYQALDVKVKDYASSTGVE---VFSPVSHTLFNPAHIIEKNGGKPPLS 179 Query: 158 YTPFRKALIQ-NLVQADL--RSLPVPAIRLTGPVTPSNIPRFFDYPF----QAIDPMFPI 210 Y F K + + +++L +P I G + S +P + + QA F Sbjct: 180 YQSFLKVAGEPSCAKSELVMSYSSLPPIGDIGNLGISEVPSLEELGYKDDEQADWTPFRG 239 Query: 211 GEQNALHILRKFCKEK--VYYYVEQRDIPAI---QGTSQLSPYLSIGVLSPRQCWNRLKE 265 GE AL L K +K V + + + P+ T+ +SPYL G LS R + L+ Sbjct: 240 GESEALKRLTKSISDKAWVANFEKPKGDPSAFLKPATTVMSPYLKFGCLSSRYFYQCLQN 299 Query: 266 EFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQA 325 + D+ K S S L +L+WREF+ + AF ++I WN+D +L A Sbjct: 300 IYKDVK-KHTSPPVSLLGQLLWREFF-YTTAFGTPNFDKMKGNRICKQIPWNEDHAMLAA 357 Query: 326 WKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGD 384 W+ G TG+P IDA M QL GWMH+ R A FL + DL + W G + F L+D D Sbjct: 358 WRDGKTGYPWIDAIMVQLLKWGWMHHLARHCVACFLTRGDLFIHWEQGRDVFERLLIDSD 417 Query: 385 LASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIH--- 441 A NNG W W S + + RI++P GK++DP G +IRH+LP L ++P QYI+ Sbjct: 418 WAINNGNWMW-LSCSSFFYQFNRIYSPISFGKKYDPDGKYIRHFLPVLKDMPKQYIYEPW 476 Query: 442 -APHSWLDKND--LSLNYPLPIVDH---KKACHHTLNQYYAAKKQ 480 AP S K + + +YP P+V H K C + + YA K+ Sbjct: 477 TAPLSVQTKANCIVGKDYPKPMVLHDSASKECKRKMGEAYALNKK 521 >gi|254462785|ref|ZP_05076201.1| deoxyribodipyrimidine photolyase family protein [Rhodobacterales bacterium HTCC2083] gi|206679374|gb|EDZ43861.1| deoxyribodipyrimidine photolyase family protein [Rhodobacteraceae bacterium HTCC2083] Length = 511 Score = 149 bits (376), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 132/494 (26%), Positives = 215/494 (43%), Gaps = 53/494 (10%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 +VW + DLR D+ L AA S++ VI ++I PE W+Q S R HFI+ L+ + Sbjct: 7 IVWFKRDLRNHDHAPLLAAS-QSNSPVIPLYIVEPEYWQQAFASRRHWHFIHDCLVDLNI 65 Query: 71 SLSQKG---IVFQYHQC---SNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLE 124 +L+ G IV C + + D Y ++ Y+R ++ ++ D+ + Sbjct: 66 ALTDLGQPLIVRVGDVCDVLAQLHEQHGVGDVYMHEETGNSWTYDRDLKVGKLCLDRNIS 125 Query: 125 KRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL 184 S P ++ L+ ++ R + + A +L VP + Sbjct: 126 --------------SHEFPTNGVVRR-LRSRDDWSKIRNVRMAENITAKPNNL-VPTLGC 169 Query: 185 TGPVTPS-NIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGT- 242 P + P F + P + G A+ L+ F + Y+ P++ Sbjct: 170 QSDSLPEKDDPMFGNTPIGKVQKG---GRTQAVADLQSFLNHRCQKYLHHISAPSLSDVH 226 Query: 243 -SQLSPYLSIGVLSPRQCWNRLKEEFVDLL-IKPKS-----GAFSWLNELIWREFYRHLM 295 S+LS +L+ G LS R+ + + + L ++ KS AF + L WR + + Sbjct: 227 CSRLSTHLAWGALSVREVVHSVAKRHAQLTPLEKKSYGRNLSAFG--SRLAWRCHFVQKI 284 Query: 296 AFYPSV---CMGKPFIPWTEKI-EWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHN 351 P + CM F E + E+ + QAW G TG+P +DA MR L GW+ Sbjct: 285 EDQPEIETHCMHPAF----EGLREYEHNEAHYQAWATGNTGYPFVDACMRSLIAEGWITF 340 Query: 352 RLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNP 411 R+R + SF L +DWR+ ++ D + + Q +G + R++NP Sbjct: 341 RMRAMLVSFASYQLWLDWRVSGDHLARLFTDFEPGIHYS--QLQMQSGVTGINTMRVYNP 398 Query: 412 TIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSW----LDKNDLSL--NYPLPIVDHKK 465 Q DP G FIR W+PEL NVP ++IH P +W LD+ D L +YP PIV+H Sbjct: 399 IKQSLEHDPTGAFIRKWVPELTNVPDEFIHEPWTWEKTLLDQRDFELGQDYPAPIVEHSF 458 Query: 466 ACHHTLNQYYAAKK 479 A + + A +K Sbjct: 459 AANAAKQKIAAVRK 472 >gi|317106754|dbj|BAJ53248.1| JHL25H03.11 [Jatropha curcas] Length = 536 Score = 149 bits (375), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 105/290 (36%), Positives = 150/290 (51%), Gaps = 30/290 (10%) Query: 208 FPIGEQNALHILRKFCKEK--VYYYVEQRDIPAI---QGTSQLSPYLSIGVLSPRQCWNR 262 F GE AL LR+ K+K + + + + P+ T+ LSPYL G LS R + Sbjct: 218 FRGGESEALKSLRESIKDKEWIANFEKPKGDPSAFVKPATTVLSPYLKFGCLSSRYFFQC 277 Query: 263 LKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPW------TEKIEW 316 L++ + ++ K S S + +L+WR+F FY +V G P ++I W Sbjct: 278 LQDVYRNVK-KHTSPPVSLVGQLLWRDF------FY-TVAFGTPNFDQMKDNRICKQIPW 329 Query: 317 NKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK-DLLVDWRIGEEY 375 N+D+ LL AW+ TG+P IDA M QL GWMH+ R A FL + DL V W G + Sbjct: 330 NEDTELLAAWRDARTGYPWIDAIMVQLRKWGWMHHLARHCVACFLTRGDLFVHWEKGRDV 389 Query: 376 FMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNV 435 F L+D D A NNG W W S + Y RI++P GK++DP G +IRH+LP L ++ Sbjct: 390 FERLLIDSDWAINNGNWLW-LSCSSFFYQYNRIYSPISFGKKYDPNGNYIRHFLPVLKDM 448 Query: 436 PTQYIH----APHSWLDKND--LSLNYPLPIVDH---KKACHHTLNQYYA 476 P ++I+ AP S K + +YP P+V H K C L + YA Sbjct: 449 PKEFIYEPWTAPLSVQTKAKCIIGRDYPKPVVSHDSASKECKRKLAEAYA 498 >gi|148905938|gb|ABR16130.1| unknown [Picea sitchensis] Length = 431 Score = 149 bits (375), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 97/258 (37%), Positives = 131/258 (50%), Gaps = 29/258 (11%) Query: 241 GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPS 300 T+ LSPYL G LS R + RL+E + + K S +L+WREF FY + Sbjct: 143 ATTVLSPYLKFGCLSSRLFYQRLQEVYRKVK-KHTEPPVSLEGQLLWREF------FY-T 194 Query: 301 VCMGKPFI------PWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLR 354 V G P P ++I WN D LL AW+ G TG+P IDA M QL GWMH+ R Sbjct: 195 VAYGTPKFDQMEGNPICKQIPWNDDDSLLSAWRDGQTGYPWIDAVMVQLRKWGWMHHLAR 254 Query: 355 MITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTI 413 A FL + DL V W G + F L+D D A NN W W + + S Y RI++P Sbjct: 255 HAVACFLTRGDLFVHWEKGRDVFDRLLIDSDWAINNSNWMWLSCSAFFSQ-YHRIYSPIS 313 Query: 414 QGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND--------LSLNYPLPIVDH-- 463 GK++DP G ++R++LP L ++P +YI+ P W D + +YP P+V H Sbjct: 314 FGKKYDPDGKYVRYFLPVLKDMPKEYIYEP--WTAPIDVQRKAKCIIGKDYPEPLVSHLG 371 Query: 464 -KKACHHTLNQYYAAKKQ 480 K C + YA KQ Sbjct: 372 ASKNCKEKIAAAYALNKQ 389 >gi|21218740|ref|NP_624519.1| deoxiribopirymidine photolyase [Streptomyces coelicolor A3(2)] gi|5748645|emb|CAB53150.1| deoxiribopirymidine photolyase [Streptomyces coelicolor A3(2)] Length = 415 Score = 149 bits (375), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 66/132 (50%), Positives = 89/132 (67%), Gaps = 1/132 (0%) Query: 331 TGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNG 390 TG+P++DAAMRQL GWMHNR R++ ASFL K L VDWRIG +F+ L+DGD+ +N Sbjct: 270 TGYPVVDAAMRQLRHQGWMHNRARLLVASFLTKTLYVDWRIGARHFLDLLVDGDVVNNQL 329 Query: 391 GWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKN 450 WQWAA TG D+ P+ R+ NP +Q +RFDP G ++R W+PEL +V +H P Sbjct: 330 NWQWAAGTGTDTRPH-RVLNPLVQARRFDPDGVYVRRWVPELRSVEGGKVHEPWRLAAAE 388 Query: 451 DLSLNYPLPIVD 462 L+YP P+V+ Sbjct: 389 RGELDYPDPLVE 400 >gi|89890451|ref|ZP_01201961.1| deoxyribodipyrimidine photo-lyase [Flavobacteria bacterium BBFL7] gi|89517366|gb|EAS20023.1| deoxyribodipyrimidine photo-lyase [Flavobacteria bacterium BBFL7] Length = 442 Score = 149 bits (375), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 131/463 (28%), Positives = 214/463 (46%), Gaps = 67/463 (14%) Query: 10 HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQH------------GISAR- 56 +LVW RNDLR+TDN +L AC N D KVI ++ P ++ G + + Sbjct: 3 NLVWFRNDLRVTDNHSLKKACDN-DGKVIGIYCFDPIFYQNSNFGLDIDLELPFGKTGKF 61 Query: 57 QSHFIYASLLQVQKSLSQKGI-VFQYHQ--CSNFDDSIEWLDSYCLQQRVTKLFYNRQYE 113 ++ FI ++ ++K L + GI + YH + F D I+ D +T ++ +++ Sbjct: 62 RAQFIIEAIEDLRKQLDKHGIPLLVYHDSPVNVFPDIIKEYD-------ITNIYLQKEWT 114 Query: 114 INEVRRDKLLEKRLQHRVIC----KSFDDSVLLPPGSILNHALQMYKVYTPFRKAL---- 165 +EV ++ LL L+ + +++D + P ++ ++ V+T FRK Sbjct: 115 RDEVEQENLLGTALKLLEVKPKGHRTYDQFLYHPHDVPYSNFQEIPTVFTQFRKKCEKES 174 Query: 166 -IQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAID----PMFP--IGEQNALHI 218 I+ LV +P+ V + IP+ D ++ + FP G A Sbjct: 175 HIRTLVDIKDYQQELPS------VVSTTIPQLEDLGLESFEKDHRSAFPWKGGAIAAWER 228 Query: 219 LRKFCKE--KVYYYVEQRD-IPAIQGTSQLSPYLSIGVLSPRQCW---NRLKEEFVDLLI 272 L + + K+ YY + R+ + I +S+LS +L+IG +S R+ + R ++E + Sbjct: 229 LNHYFWDTGKLQYYKKTRNGLVGIDYSSKLSTWLAIGCISAREIYWEVQRFEKE-----V 283 Query: 273 KPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWT----EKIEWNKDSHLLQAWKQ 328 K + + ELIWR+F++ Y S+ G ++ EW L W Sbjct: 284 KKNQDTYWLIFELIWRDFFK-----YVSLKNGNDIFKLGGILHKEYEWKSSERELSKWIN 338 Query: 329 GYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASN 388 G T ++A M++L GWM NR R AS+ DWRIG YF L+D D+ SN Sbjct: 339 GETHERFVNANMKELAATGWMSNRGRQNVASYWSMHKEQDWRIGAAYFEHILIDYDVHSN 398 Query: 389 NGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPE 431 G W + + GND P R FN +Q R+D GT+ R WL E Sbjct: 399 YGNWMYNSGVGND--PRNRTFNIELQASRYDSDGTYQRMWLQE 439 >gi|29467477|dbj|BAC67177.1| cryptochrome 2 [Armoracia rusticana] Length = 617 Score = 149 bits (375), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 141/492 (28%), Positives = 217/492 (44%), Gaps = 58/492 (11%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 +VW R DLRI DN AL AA H + V VFI PE+ Q ++ SL + + Sbjct: 8 IVWFRRDLRIEDNPALAAAAH--EGSVFPVFIWCPEEEGQFYPGRASRWWMKQSLAHLSQ 65 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQ-QRVTKLFYNRQYE-INEVRRDKLLEKRLQ 128 SL G + N +I LD C++ TK+ +N Y+ ++ VR + EK ++ Sbjct: 66 SLKALGSELTLIKTHNTVSAI--LD--CIRITGATKVVFNHLYDPVSLVRDHTVKEKLVE 121 Query: 129 HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLP---VPAIRLT 185 + +SF+ +L P I + + ++ + K + +++ + P +P Sbjct: 122 LGISVQSFNGDLLYEPWEIYFEKGKPFTNFSSYWKKCLDMSIESVMLPPPWRLMPISTAA 181 Query: 186 GPVTPSNIPRF-----FDYPFQAI-DPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAI 239 V +I + P A+ + G NA IL +F ++++ Y + Sbjct: 182 EAVWACSIEELGLENEAEKPSNALLTRAWSPGWSNADKILNEFIEKQLIDYAKNSKKVVG 241 Query: 240 QGTSQLSPYLSIGVLSPR---QC-------WNRLK----EEFVDLLIKPKS-----GAFS 280 TS LSPYL G +S R QC W R K +E DL +K G + Sbjct: 242 NSTSLLSPYLHYGEISVRRIFQCARMKQIIWARDKNSEGDESADLFLKGIGLREYLGIYV 301 Query: 281 WLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAM 340 ++ L+ + F + F + +W GY Sbjct: 302 SISRLLTSNLCGVIFVFSLGMADVDKFQGLETRQDWLSVGGCRNERALGY---------- 351 Query: 341 RQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGN 400 G MHNRLR+I +SF VK LL+ W+ G +YF LLD DL + GWQ+ + + Sbjct: 352 ------GCMHNRLRVIVSSFAVKFLLLPWKWGMKYFWDTLLDADLECDILGWQYISGSLP 405 Query: 401 DSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIH----APHSWLDKN--DLSL 454 D R+ NP IQG ++DP+G +IR WLPEL +PT++IH AP + L + +L Sbjct: 406 DGHELDRLDNPAIQGAKYDPEGEYIRQWLPELARLPTEWIHHPWDAPLTVLKASGVELGT 465 Query: 455 NYPLPIVDHKKA 466 NY PI+D A Sbjct: 466 NYAKPILDIDTA 477 >gi|326433957|gb|EGD79527.1| cryptochrome DASH [Salpingoeca sp. ATCC 50818] Length = 552 Score = 149 bits (375), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 142/504 (28%), Positives = 224/504 (44%), Gaps = 69/504 (13%) Query: 3 ATTAMSVHLVWLR-NDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISAR----- 56 ++ A+ +VW R +DLRI D++ L A S V+ V+ P RQ G +A+ Sbjct: 5 SSKAVRPAVVWFRGSDLRIHDHEPLLEAAKASKGHVVPVYCFDP---RQVGPAAKTRCGQ 61 Query: 57 -------QSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYN 109 ++ FI + ++++L + G + + E + T++F Sbjct: 62 FPKCGWQRTRFIVECVEDLRRNLQRLG----SNLVVRVGEPEEVIPDIVSITGATEVFGQ 117 Query: 110 RQYEINEVRRDKLLEKRLQ--------HRVICKSFDDSVLLPPGSILNHALQMYKVYTPF 161 ++ E + L KRL +C D LP + V++ F Sbjct: 118 KEVCSEETGVEHRLAKRLSVPLTLRWGAITLCHRDD----LP---YERSCSDLPGVFSQF 170 Query: 162 RKALIQNLVQADLRSLPVPAIRLTGPVT--PSNIPRFFDYPFQAIDPMFPI--GEQNALH 217 RKA + R P L P+ P ++P P + P P E+ L Sbjct: 171 RKAAEACVPIRPPRPPPPSLQPLPQPIAGDPGHVP-----PVTQLSPNAPAKADERGVLT 225 Query: 218 IL--RKFCKEKVYYYVEQRDIPAIQG-----------TSQLSPYLSIGVLSPRQCWNRLK 264 + + +V +Y+ D A +S+ SP+L+ G +S R + +K Sbjct: 226 FVGGETVARTRVKHYLWDTDCIATYKDTRNGLVGADYSSKFSPWLAHGCVSARWIHSEVK 285 Query: 265 EEFVDLLIKPKSGAFSWLN-ELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLL 323 + + K+ + WL EL+WR+++R +A + K + I W L Sbjct: 286 RYERERV---KNNSTYWLVFELLWRDYFR-FVALQHGTAIFKEGGVQRKGIAWRHSPLDL 341 Query: 324 QAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDG 383 AW++G TGFP +DA MR+L G+M NR R ASFL KDLL+DWR+G E+F S L+D Sbjct: 342 SAWQEGRTGFPFVDANMRELAATGFMSNRGRQNVASFLTKDLLIDWRLGAEWFESLLIDH 401 Query: 384 DLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIH-- 441 D +N G W +AA GND R FN Q K +DP ++ W+PEL ++P + H Sbjct: 402 DPCANYGNWNYAAGIGNDPR-QGRHFNVIRQAKTYDPAAEYVHLWVPELKHLPAPFAHTP 460 Query: 442 --APHSWLDKNDLSL--NYPLPIV 461 APH L+ ++L +YP PIV Sbjct: 461 YQAPHGELEAAGVALEKSYPRPIV 484 >gi|332520700|ref|ZP_08397162.1| cryptochrome, DASH family [Lacinutrix algicola 5H-3-7-4] gi|332044053|gb|EGI80248.1| cryptochrome, DASH family [Lacinutrix algicola 5H-3-7-4] Length = 437 Score = 149 bits (375), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 124/440 (28%), Positives = 203/440 (46%), Gaps = 38/440 (8%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFI-----ATPEQWRQHGISARQSHFIYASL 65 LVW +NDLRI DN L A + S+ VIA++ +++ ++ F+ ++ Sbjct: 10 LVWFKNDLRINDNATLLNAVNESET-VIAIYCFDNRYFKKDKFGFKKTEKFRARFLIETI 68 Query: 66 LQVQKSLSQKGI-VFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLE 124 ++ L I +F Y C ++SIE L + L+ +++ E L++ Sbjct: 69 TDLKFQLQALNIPLFVY--CDYTENSIENLQN---THGFDALYLQKEWTTEENNILDLVK 123 Query: 125 KRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL 184 K+L V + L P + + + V+T FRK L +N++ L PA Sbjct: 124 KKLNPNVKIHEEYNQFLFHPEDLNFNIESLPSVFTEFRKNLEKNILVRTLLPTANPANSS 183 Query: 185 TGPVTPSNIPRFFDYPFQAI----DPMFPI--GEQNALHILRK--FCKEKVYYYVEQRD- 235 + +P D F FP GE A L F ++K+ +Y + R+ Sbjct: 184 YTFKNETRVPTLKDLGFSDFKIHNQSAFPFKGGETEAFKRLENYFFQEKKLGFYKKTRNG 243 Query: 236 IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLM 295 + +S+LS +L+ G +S + + ++KE F L K +S + + ELIWR++++++ Sbjct: 244 LIGTDYSSKLSAWLANGSISAKTIYWKVKE-FETLHFKNQS-TYWLIFELIWRDYFKYVS 301 Query: 296 A------FYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWM 349 F + K + +W + + W T P I+A M +LN GWM Sbjct: 302 KKNNNKIFKIGGILDKTY-------QWKDNKDAVNKWINSETNEPFINANMNELNKTGWM 354 Query: 350 HNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIF 409 NR R AS+ K+LL+DWRIG YF S L+D D+ SN G W + + GND P R F Sbjct: 355 SNRGRQNVASYFAKELLLDWRIGAAYFESLLIDYDVHSNYGNWMYVSGVGND--PRNRKF 412 Query: 410 NPTIQGKRFDPQGTFIRHWL 429 N +Q +R+D G + WL Sbjct: 413 NIKLQAERYDANGKYQSMWL 432 >gi|195389935|ref|XP_002053627.1| GJ24000 [Drosophila virilis] gi|194151713|gb|EDW67147.1| GJ24000 [Drosophila virilis] Length = 539 Score = 148 bits (374), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 133/505 (26%), Positives = 228/505 (45%), Gaps = 62/505 (12%) Query: 8 SVHLVWLRNDLRITDNKALYAACHNSDAKV--IAVFIATPEQWRQHGISARQSHFIYASL 65 +++W R+ LR+ DN AL AA + D + I +FI E + + F+ SL Sbjct: 5 GANVIWFRHGLRLHDNPALLAALSDKDQGIALIPIFIFDGESAGTKSVGYNRMRFLLDSL 64 Query: 66 ----LQVQKSLSQKG--IVFQYHQCSNFDDSIEW--LDSYCLQQRVTKLFYNRQYEINEV 117 +Q+QK+ +G ++ Q F E L C++Q ++ R + Sbjct: 65 QDIDMQLQKATEGRGGLLMCQGQPTQIFRRLHERVRLHKICVEQDCEPIWNERDEATKSL 124 Query: 118 RRDKLLE--KRLQHRVICKSFD-DSVLLPPGSILNHALQMYK-----VYTPFRKALIQNL 169 R+ +E +++ H + +D +V+ G I QM+ + P R N Sbjct: 125 CRELNIEYVEKVSHTL----WDPRTVIDTNGGIAPLTYQMFLHTVQIIGLPPRPIPDPNF 180 Query: 170 VQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPI----GEQNALHILRKFCKE 225 + LP + G + + P F+ + + + GE AL +L + K Sbjct: 181 EGVSIAQLPQELRKDIGCLEKTPTPEDFNIYSDNMGYLAKMNWIGGETQALSLLGERLKV 240 Query: 226 KVY-----YYVEQRDIPAIQGTSQ-LSPYLSIGVLSPRQCWNRLKEEFVDLLIKP----- 274 + + YY+ + +P I T + +S +L G LS R+ + + + F ++ ++ Sbjct: 241 EQHAFERGYYLPNQALPNILETPKSMSAHLRFGCLSVRRFYWSMHDLFKNVQMRACVRGV 300 Query: 275 -KSGAFSWLNELIWREFYRHLMAFYP--------SVCMGKPFIPWTEKIEWNKDSHLLQA 325 +G +LIWRE++ + P +C+ IPW++ D+ LQ Sbjct: 301 QMTGGAHITGQLIWREYFYTMSVNNPQYDRMEGNEICLS---IPWSKP-----DADQLQR 352 Query: 326 WKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGD 384 W+ G TGFP+ID+AMRQL GW+H+ LR A+FL + L +W +G E+F+ LLD D Sbjct: 353 WRLGQTGFPLIDSAMRQLLAEGWLHHTLRNTVATFLTRGGLWQNWELGLEHFLKYLLDAD 412 Query: 385 LASNNGGWQWAASTGNDSVPYFRIFN-PTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAP 443 + G W W +S+ + + + P KR DP G +I+ ++PEL NVP ++IH P Sbjct: 413 WSVCAGNWMWVSSSAFERLLDSSLVTCPVALAKRLDPNGAYIKQYVPELKNVPKEFIHEP 472 Query: 444 HSWLDKND------LSLNYPLPIVD 462 + L +YP I+D Sbjct: 473 WRMSSEQQERYECLLGFHYPQRIID 497 >gi|195387030|ref|XP_002052207.1| GJ17431 [Drosophila virilis] gi|194148664|gb|EDW64362.1| GJ17431 [Drosophila virilis] Length = 541 Score = 148 bits (373), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 149/523 (28%), Positives = 220/523 (42%), Gaps = 68/523 (13%) Query: 1 MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAK-----VIAVFIATPE--QWRQHGI 53 M A VH W R LR+ DN AL +++ A V +FI P W Q G Sbjct: 1 MSAKRRTLVH--WFRKGLRVHDNPALSQIFNDARASPEKFYVRPIFILDPGILDWMQVG- 57 Query: 54 SARQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYE 113 A + F+ SL+ + K L + + D E + + +Q L + E Sbjct: 58 -ANRWRFLQQSLVDLDKKLKELNSRLYIVRGKPVDVFPELFERWNVQL----LTFESDIE 112 Query: 114 INEVRRDKLLEK-RLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQA 172 ++RD ++K +H V + + P ++ A + K ++K L Sbjct: 113 PYALQRDTTVQKIASEHGVKVDTHCSHTIYNPELVI--AKNLGKAPVTYQKFL------G 164 Query: 173 DLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPM---------------------FPIG 211 + L +P + P I D F+A+D FP G Sbjct: 165 IVDKLKLPKVLAVPEGLPDGIKPIAD-EFEAVDSCVYDCPTLDQLVKRPQELGVNKFPGG 223 Query: 212 EQNALHILRKFCKEKVYYYVEQRDIPAIQG----TSQLSPYLSIGVLSPRQCWNRLKEEF 267 E AL + ++ + ++ A T+ LSPYL G LS R RLKE Sbjct: 224 ETEALRRMEASLIDENWVAAFEKPNTAPNSLEPSTTVLSPYLKFGCLSARLLHERLKEIL 283 Query: 268 VDLLIKPKSGA--FSWLNELIWREFYRHLMAFYPSV--CMGKPFIPWTEKIEWNKDSHLL 323 V KPK S + +L+WREFY + A P+ +G + +I W K L Sbjct: 284 VR---KPKHSKPPVSLVGQLLWREFYYTVAAADPNFDRMLGNAY---CLQIPWQKQPDHL 337 Query: 324 QAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLD 382 +AW G TG+P IDA MRQL GW+H+ R A FL + DL + W G+ F LLD Sbjct: 338 EAWTHGRTGYPFIDAIMRQLRQEGWIHHLARHAVACFLTRGDLWISWEDGQRVFEQLLLD 397 Query: 383 GDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHA 442 D A N G W W +++ YFR+++P GK+ DP G +IR ++PEL P I+ Sbjct: 398 QDWALNAGNWMWLSASAFFH-QYFRVYSPVAFGKKTDPTGAYIRKYVPELAKYPAGCIYE 456 Query: 443 P-HSWLDKND-----LSLNYPLPIVDHKKACHHTLNQYYAAKK 479 P + L L ++YP IV+H + + AA K Sbjct: 457 PWKATLSAQREYGCVLGVDYPHRIVNHDIVHKENIKRMSAAYK 499 >gi|224085023|ref|XP_002198533.1| PREDICTED: cryptochrome 4 [Taeniopygia guttata] Length = 527 Score = 147 bits (372), Expect = 3e-33, Method: Compositional matrix adjust. Identities = 142/492 (28%), Positives = 219/492 (44%), Gaps = 45/492 (9%) Query: 8 SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67 ++HL R +LR+ DN L AA +S+A + I A + +F+ SL Sbjct: 5 TIHL--FRKELRLHDNPVLLAALESSEALYPVYILDRAFLTSSMHIGALRWNFLLQSLED 62 Query: 68 VQKSLSQKG---IVFQYHQCSNFDDSIE-WLDSYCLQQRVTKLFYNRQYEINEVRRDKLL 123 + K+L Q G +V Q D I+ W + + FY ++ E N R L Sbjct: 63 LHKNLGQLGSCLLVIQGEYEIVLRDHIQKWNITQVTLDAEMEPFY-KEMEANIQRLGAEL 121 Query: 124 EKRLQHRVICKSFDDSVLL------PPGSILNHALQMYKVYTPFRKALIQNLVQADLRSL 177 + V ++ +L PP + + + P + ++NL D + Sbjct: 122 GFEVLSLVSHSLYNTQRILDLNGGSPPLTYKRFLHILSLLGDP--ELPVRNLTAEDFQRC 179 Query: 178 PVPAIRLTGPVTPSNIPRFFDYPF--QAIDPMFPIGEQNALHILRKFCKEK--VYYYVEQ 233 P G +P D +++ P + GE L L + ++ V + + Sbjct: 180 RAPE---PGLAECYRVPLPVDLKISPESLSP-WRGGETEGLRRLEQHLIDQGWVTSFAKP 235 Query: 234 RDIP--AIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAF---SWLNELIWR 288 R P + T+ LSPY S+G LS R + RL ++ + K + S +L+WR Sbjct: 236 RTSPNSLLPSTTGLSPYFSMGCLSVRTFFYRLS----NIYAQAKHHSLPPVSLQGQLLWR 291 Query: 289 EFYRHLMAFYPSVCM--GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTI 346 EF+ + + P+ G P +I W KD+ L WK TGFP IDA M QL Sbjct: 292 EFFYTVASATPNFTQMAGNPI---CLQISWYKDAERLHKWKTAKTGFPWIDAIMTQLRQE 348 Query: 347 GWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPY 405 GW+H+ R A FL + DL + W G + F LLD D + N G W W +++ Y Sbjct: 349 GWIHHLARHAVACFLTRGDLWISWEEGMKVFEELLLDADYSINAGNWMWLSASAFFH-QY 407 Query: 406 FRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND------LSLNYPLP 459 RIF P GKR DPQG +IR +LP L N P++YI+ P + ++ + +YP P Sbjct: 408 TRIFCPVRFGKRTDPQGNYIRKYLPILKNFPSKYIYEPWTASEEEQKLAGCIIGQDYPFP 467 Query: 460 IVDHKKACHHTL 471 +V+HK+A H L Sbjct: 468 MVNHKEASDHNL 479 >gi|321474453|gb|EFX85418.1| DNA photolyase 1 [Daphnia pulex] Length = 524 Score = 147 bits (372), Expect = 3e-33, Method: Compositional matrix adjust. Identities = 152/517 (29%), Positives = 222/517 (42%), Gaps = 88/517 (17%) Query: 13 WLRNDLRITDNKALYAACH---NSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69 W R LR+ DN AL A S ++ VFI P + + + F+ SL + Sbjct: 10 WFRKGLRLHDNPALLNALEKVGESHYELRPVFILDPWFVKNAKVGPNRWRFLVQSLQDLD 69 Query: 70 KSLSQKG---IVFQYHQCSNFDDSI-EWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125 +L + G + + F EW V KL + E RD+ ++K Sbjct: 70 DNLKKIGSRLFILKGSPTETFKKVFKEW--------NVKKLTFEVDIEPYAKTRDEEIKK 121 Query: 126 RLQHRVIC-------------KSFDDSVLLPPGSILNHALQMYKVYTPFRKAL------- 165 H + K F + P + + + K TP KAL Sbjct: 122 LADHHSVTVVAKVSHTIYDLEKVFKANGNKAPLTYVKFQSVVAKFGTP-EKALNAPGKLP 180 Query: 166 --IQNLVQADLRSLPVPA---IRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILR 220 Q L+ +D ++P+ + LTG ++ GE AL + Sbjct: 181 KQCQTLLLSDKYNVPLLEEMQVDLTG----------------LGKELYRGGETEALARME 224 Query: 221 KFCKEK--VYYYVEQRDIP-AIQ-GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKS 276 K+ ++ V + + P +I+ T+ LSPYL G LSPR ++RL E +D K S Sbjct: 225 KYMSQQDWVCKFSKPDTSPNSIEPSTTVLSPYLKFGCLSPRLMYHRL-HEIIDGR-KHTS 282 Query: 277 GAFSWLNELIWREFYRHLMAFYPSV--CMGKPF---IPWTEKIEWNKDSHLLQAWKQGYT 331 S +++WREFY A+ P+ +G P IPW E D H + AWK G T Sbjct: 283 PPTSLTGQMLWREFYYTCGAYTPNFNRMVGNPVCKQIPWKVDPE---DEHFV-AWKNGRT 338 Query: 332 GFPIIDAAMRQLNTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNG 390 G+P IDA M QL T GW+H+ R A FL + DL V W +G++ F LLD D A N G Sbjct: 339 GYPFIDAIMIQLRTEGWIHHLARHAVACFLTRGDLWVSWELGQQVFEELLLDADWALNAG 398 Query: 391 GWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKN 450 W W +++ YFR+++P GK+ D G +I+ +LP L PT+YI+ P W K Sbjct: 399 NWMWLSASAFFH-SYFRVYSPVAFGKKTDKHGDYIKKYLPVLKKFPTEYIYEP--W--KA 453 Query: 451 DLSL----------NYPLPIVDHKKACHHTLNQYYAA 477 LS+ +YP IVDH L + A Sbjct: 454 PLSVQQTAGCIIGKDYPKRIVDHDVVMKENLAKMKKA 490 >gi|72160938|ref|YP_288595.1| deoxyribodipyrimidine photo-lyase type I [Thermobifida fusca YX] gi|71914670|gb|AAZ54572.1| Deoxyribodipyrimidine photo-lyase type I [Thermobifida fusca YX] Length = 419 Score = 147 bits (371), Expect = 4e-33, Method: Compositional matrix adjust. Identities = 119/442 (26%), Positives = 210/442 (47%), Gaps = 41/442 (9%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQS-HFIYASL 65 MS +V DLR++D+ AL+AA +D +V+ +F+ P R +SAR ++ +L Sbjct: 1 MSTTVVLFTRDLRVSDHPALHAAVTEAD-RVVPLFVVDPALVR---VSARNRIAYLLEAL 56 Query: 66 LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125 +++ L ++G Q +++ + Q ++ + VRR + L + Sbjct: 57 AELRGLLRERGGELVVRQGDTVAETVRIVAEAGAQ----AVYLSADVSAAAVRRARQLTE 112 Query: 126 RLQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPA--- 181 ++ ++F ++PPG++ Y+++TP+ + A RS P PA Sbjct: 113 AVRAAGAHVRTFPGVTVVPPGALRPAHGDHYQIFTPY----LNAWRAAQWRS-PRPAPER 167 Query: 182 IRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQG 241 +RL + P +P + + P EQ + +E++ ++ Q + Sbjct: 168 VRLPEGLVPGPLP-GAELIRLGTGVLAPQREQGGP----RTARERIRAWLAQPNQ----- 217 Query: 242 TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSV 301 S+ +L G LSP + V L+ + L +L R+F+ ++ +P + Sbjct: 218 DSRFGCHLHFGCLSPLE---------VALVAREHPRGALLLRQLALRDFHHQVLQAFPRL 268 Query: 302 CMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFL 361 + P I+W D AW G TG PI+DA MRQL G++ R+RM+TA++L Sbjct: 269 PRAD-YRP--RPIQWRDDDSAFAAWCSGRTGVPIVDAGMRQLLWEGYVPGRIRMLTATYL 325 Query: 362 VKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQ 421 + L + W+ G ++F S L+DGD+A+N G WQ A TG P RI N Q +R+DP Sbjct: 326 TQVLRIHWKRGADHFYSLLVDGDVANNYGNWQQIAGTGGVPRPARRI-NLYRQAERYDPS 384 Query: 422 GTFIRHWLPELNNVPTQYIHAP 443 G ++R ++PEL ++ +H P Sbjct: 385 GDYVRRFVPELRSISGSAVHHP 406 >gi|56459233|ref|YP_154514.1| deoxyribodipyrimidine photolyase [Idiomarina loihiensis L2TR] gi|81821701|sp|Q5QXE0|CRYD_IDILO RecName: Full=Cryptochrome DASH gi|56178243|gb|AAV80965.1| Deoxyribodipyrimidine photolyase [Idiomarina loihiensis L2TR] Length = 449 Score = 147 bits (371), Expect = 4e-33, Method: Compositional matrix adjust. Identities = 133/455 (29%), Positives = 210/455 (46%), Gaps = 48/455 (10%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQ--WRQHGISARQSH---FIYA 63 + L RNDLR+ DN ALY A S+ +I F P Q + +GI A H F+ Sbjct: 16 LGLFVFRNDLRVEDNLALYEAAQRSET-LICCFCFNPTQNKYGHYGIPAMGKHRFTFLQQ 74 Query: 64 SLLQVQKSLSQKG---IVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120 SL Q++ L +G IV FD + L S +++V +F ++ E + Sbjct: 75 SLKQLRTELEMRGQKLIVL----TGTFDRILTELIS---ERQVDAIFLSQHQGYYERLQL 127 Query: 121 KLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVP 180 LL++R ++ ++ L + + + ++ FRK + + + PV Sbjct: 128 GLLQQRFPFLPFHET-PNNTLFSEQELPFELADLPETFSQFRKKV--EPLSRNFSVQPVN 184 Query: 181 AIRLTGPVTPSNIPRFFDYPFQAIDPM-------FPIGEQNAL-HILRKFCKEKVYYYVE 232 A+ P P NI YP + + F GE+ AL H+ F E Y + Sbjct: 185 AL----PSLPKNI----SYPGFKAETLNELASDDFEGGERAALTHLTSYFSGESAGTYKQ 236 Query: 233 QRD-IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFY 291 R+ + +++ SP+L+ G LS RQ L+ + S S+ EL+WRE++ Sbjct: 237 TRNALDDFSSSTKFSPWLAQGCLSVRQIMAALRAYETEFGENESSYWISF--ELLWREYF 294 Query: 292 RHLMAFYPSVCMGKPFIPWT----EKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIG 347 F+ ++ GK ++ + + + S Q W G T +PI++A M+QLN G Sbjct: 295 -----FWYALKHGKRLFAFSGLSGKSPKTSFYSERFQKWCSGNTPYPIVNACMKQLNATG 349 Query: 348 WMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFR 407 +M NR R + AS V +L +DWR G YF QL+D D++SN G WQ+ A G D + R Sbjct: 350 YMSNRGRQLVASCFVHELSLDWRYGAAYFEQQLIDYDVSSNWGNWQYLAGVGADPRGH-R 408 Query: 408 IFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHA 442 FN Q +R+DP FI W +L+ P + A Sbjct: 409 QFNLEKQTERYDPDNEFIERWAGDLSGQPIDSVDA 443 >gi|86140426|ref|ZP_01058985.1| probable bacterial cryptochrome [Leeuwenhoekiella blandensis MED217] gi|85832368|gb|EAQ50817.1| probable bacterial cryptochrome [Leeuwenhoekiella blandensis MED217] Length = 432 Score = 147 bits (371), Expect = 4e-33, Method: Compositional matrix adjust. Identities = 121/440 (27%), Positives = 213/440 (48%), Gaps = 32/440 (7%) Query: 10 HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQS-----HFIYAS 64 +LVW RNDLR+ DN +L+ A N++ + AV+ P Q+++ +++ F+ + Sbjct: 3 NLVWFRNDLRVKDNTSLFKASKNANL-LAAVYCFDPRQFQEDQFGFKKTERFRAQFLIET 61 Query: 65 LLQVQKSLSQKGI-VFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQY--EINEVRRDK 121 + ++++ L++ I +F Y++ + L + ++ +LF+ ++ E EV R K Sbjct: 62 VTELREHLAELNIPIFVYNEQPE-----DILPQLIERLQIDQLFFQEEWTSEEQEVTR-K 115 Query: 122 LLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNL-VQADLRSLPVP 180 + E +S+D ++ P + V+T +RK +NL ++ ++ P Sbjct: 116 VKESCSASVKFTESYDQFLIHPEDLPYKSIEAIPNVFTQWRKKCEKNLNIRKEVSITEFP 175 Query: 181 AIRLTGPVTPSNIPRFFDYPFQAIDP----MFPI--GEQNALHILRKFC--KEKVYYYVE 232 T +IP D ++ P FP GEQ AL+ + + K+ Y + Sbjct: 176 QTNFEENST--SIPTLQDLNLESFTPDHRSAFPFKGGEQQALNRIEDYFWQTRKLAVYKK 233 Query: 233 QRD-IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFY 291 R+ + +S+LS +L+ G +S R + ++K F K +S + + EL+WR+F+ Sbjct: 234 TRNGLTGKNYSSKLSAWLANGGISARTIYWKIKA-FEQEETKNESTYWLFF-ELMWRDFF 291 Query: 292 RHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHN 351 +++ Y I + +W + + W G T + ++A M+++ GWM N Sbjct: 292 KYISLKYGDQIFKIGGIL-EKDYDWKTNKAAKKEWINGQTKYDFVNANMKEIAATGWMSN 350 Query: 352 RLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNP 411 R R AS+ K+L DWRIG YF S L+D D+ SN G W + + GND P R FN Sbjct: 351 RGRQNVASYWAKELQQDWRIGAAYFESMLIDYDVHSNYGNWMYNSGVGND--PRDRKFNI 408 Query: 412 TIQGKRFDPQGTFIRHWLPE 431 Q +R+D G F R WL E Sbjct: 409 KSQAERYDGDGKFRRLWLQE 428 >gi|194744725|ref|XP_001954843.1| GF16541 [Drosophila ananassae] gi|190627880|gb|EDV43404.1| GF16541 [Drosophila ananassae] Length = 542 Score = 147 bits (371), Expect = 4e-33, Method: Compositional matrix adjust. Identities = 137/511 (26%), Positives = 229/511 (44%), Gaps = 66/511 (12%) Query: 8 SVHLVWLRNDLRITDNKALYAACHNSDAKV--IAVFIATPEQWRQHGISARQSHFIYASL 65 +++W R+ LR+ DN AL AA D + + VFI E + + F+ SL Sbjct: 5 GANVIWFRHGLRLHDNPALLAALAEKDQGIALLPVFIFDGESAGTKNVGYNRMRFLLDSL 64 Query: 66 L----QVQKSLSQKGIVFQY-----HQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINE 116 Q+Q +G + + H + + L CL+Q ++ +R I Sbjct: 65 QDIDDQIQTLTDGRGRLLLFEGKPEHIFRRLHEQLR-LHKICLEQDCEPIWNHRDETIRS 123 Query: 117 VRRDKLLE--KRLQHRVICKSFDDSVLLPPGSILNHALQMYK-----VYTPFRKALIQNL 169 + + +E +++ H + SV+ G I QM+ + P R L Sbjct: 124 LCHELGIEFVEKVSHTLWNPQ---SVIETNGGIPPLTYQMFLHTVQILGLPPRPVNDARL 180 Query: 170 VQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPI----GEQNALHILRKFCKE 225 A + +R G + P F+ + + I GE+ AL +L + K Sbjct: 181 EDASFVQMDPELLRNLGYLEQIPTPEHFNVYGDNMGFLSKIRWRGGERQALLLLDERLKV 240 Query: 226 KVY-----YYVEQRDIPAIQGTSQ-LSPYLSIGVLSPRQCWNRLKEEFVDLLIKP----- 274 + + YY+ + +P IQ T + +SP+L G LS R+ + + + F ++ ++ Sbjct: 241 EQHAFEKGYYMPNQALPNIQETPKSMSPHLRFGCLSVRRFYWSVHDLFKNVQLRACVRGV 300 Query: 275 -KSGAFSWLNELIWREFYRHLMAFYPS--------VCMGKPFIPWTEKIEWNKDSHLLQA 325 +G +LIWRE++ + P+ +C+ IPW ++ D LQ Sbjct: 301 QMTGGAHITGQLIWREYFYTMSVNNPNYDRMDGNEICLS---IPWAKR-----DETQLQK 352 Query: 326 WKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGD 384 W+ G TGFP+IDAAMRQL GW+H+ LR A+FL + L W G ++F+ LLD D Sbjct: 353 WRLGQTGFPLIDAAMRQLLAEGWLHHVLRNTVATFLTRGGLWQSWEHGVQHFLRYLLDAD 412 Query: 385 LASNNGGWQWAASTGNDSVPYFRIFN-PTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAP 443 + G W W +S+ + + + P KR DP G +IR ++PEL NVP ++IH P Sbjct: 413 WSVCAGNWMWVSSSAFERLLDSSLVTCPVALAKRLDPDGAYIRQYVPELKNVPREFIHEP 472 Query: 444 HSW---LDKND-----LSLNYPLPIVDHKKA 466 W L + + + ++YP ++D KA Sbjct: 473 --WRMNLQQQEQYECLIGVHYPDRLIDLSKA 501 >gi|219117169|ref|XP_002179379.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1] gi|217409270|gb|EEC49202.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1] Length = 585 Score = 147 bits (370), Expect = 5e-33, Method: Compositional matrix adjust. Identities = 130/455 (28%), Positives = 214/455 (47%), Gaps = 46/455 (10%) Query: 16 NDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQKSLSQK 75 +D+RI DN+AL ACH++ + ++ W G + +L Q+ LSQ+ Sbjct: 33 HDIRIHDNEALLLACHHNHVLPVFLWQVPVHHW---GARGALQVVLKEALHQLSLQLSQE 89 Query: 76 GIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQY--EINEVRRDKLLE-KRLQ-HRV 131 I C N DS+ L + + +++NR+ E E+ R + K+L V Sbjct: 90 SINLPL-VCGNTADSVSELCKIASEIGASAVYWNREMTPESREMERHRATSLKQLDIAAV 148 Query: 132 ICKS---FD-DSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187 C+S +D + + L G H + PF++A + L + D L ++ Sbjct: 149 ACQSALLYDVEKLELDEGFHGGH----WGTLMPFKRACEKQLGKPDRPILMKESLACLYS 204 Query: 188 VTP-----SNIPRFFDYPFQAIDP----------MFPIGEQNALHILRKFCKEKVYYYVE 232 V P ++P + F+ + P FP+ A L F + + Y Sbjct: 205 VAPPPQDCKSVP-IEELGFETVPPSTKWDEPIRERFPMIHYLAQRRLDHFLIKGLPLYES 263 Query: 233 QRDIPAIQ-GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFY 291 R ++ TSQLS YL IG++SPR+ + R++ D + P++ ++ LIWRE Sbjct: 264 DRSRADMEYATSQLSVYLRIGIISPRELYWRIE----DSSLSPEAKK-TFARRLIWRELA 318 Query: 292 RHLMAFYPSVCMGKPFIPWTEKIEW---NKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGW 348 + + +P + + E EW +++ AWK+G TG+P++DA MR+L T G+ Sbjct: 319 YYQLFCFPKM-RDRSIRKHYEASEWVTGDEEKGRFNAWKRGLTGYPLVDAGMRELYTTGY 377 Query: 349 MHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRI 408 + +RM+ ASFLV+ L VDW G E+F L D D A N+ WQ A +G D + + Sbjct: 378 LTQSVRMVVASFLVEYLRVDWTKGAEWFHYTLADADSAINSMMWQNAGRSGIDQWNF--V 435 Query: 409 FNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAP 443 +P + DP G + R W+PEL+ +P QY+ P Sbjct: 436 LSP--ENASQDPYGEYTRKWVPELSPLPLQYLQRP 468 >gi|300934389|ref|ZP_07149645.1| deoxyribodipyrimidine photolyase [Corynebacterium resistens DSM 45100] Length = 216 Score = 147 bits (370), Expect = 5e-33, Method: Compositional matrix adjust. Identities = 85/229 (37%), Positives = 117/229 (51%), Gaps = 30/229 (13%) Query: 254 LSPRQCWNRLKEEFV-DLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK-----PF 307 +SPR W + E + + ++GAF +LIWR+F H + P++ Sbjct: 1 MSPRTVWATISEAAERGEIAESEAGAFR--RQLIWRDFAWHRLYHVPTLATCNVQAKFNR 58 Query: 308 IPWTEKIEWN--KDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365 PW WN +DS AWK+G TG P++DA MR+L G MHNR+RM+ S L K+L Sbjct: 59 FPWG----WNEARDSAEFDAWKRGITGVPLVDAGMRELWETGSMHNRVRMVVGSLLTKNL 114 Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425 L+ WR+GEE+F L+D D A N WQW A G+D+ PYFRIFNP Q + FD + + Sbjct: 115 LIHWRLGEEWFWDTLVDADYACNPFNWQWVAGCGDDAAPYFRIFNPVTQAQIFDKESLYQ 174 Query: 426 RHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQY 474 + W+PE Y P PIVD K++ L Y Sbjct: 175 QTWVPEAQTNHDGYP----------------PQPIVDLKQSRAEALAVY 207 >gi|242060916|ref|XP_002451747.1| hypothetical protein SORBIDRAFT_04g007140 [Sorghum bicolor] gi|241931578|gb|EES04723.1| hypothetical protein SORBIDRAFT_04g007140 [Sorghum bicolor] Length = 550 Score = 147 bits (370), Expect = 5e-33, Method: Compositional matrix adjust. Identities = 103/318 (32%), Positives = 162/318 (50%), Gaps = 28/318 (8%) Query: 177 LPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFC--KEKVYYYVEQR 234 LPVP + G + D + I P F GE AL +++ KE V + + + Sbjct: 205 LPVPTVEELG---------YVDISEEEIPP-FRGGETEALRRMKESLQNKEWVAKFEKPK 254 Query: 235 DIPAI---QGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFY 291 P+ T+ LSPYL G LS R ++ +++ + + K S + +L+WR+F+ Sbjct: 255 GDPSAFLKPSTTVLSPYLKFGCLSSRYFYHCIQDVYKSVRNHTKP-PVSLIGQLLWRDFF 313 Query: 292 RHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHN 351 + P+ K ++I W+++ L AW+ G TG+P IDA M QL GWMH+ Sbjct: 314 YTVSYGTPNFDRMK-GNKICKQIPWSENEELFVAWRDGQTGYPWIDAIMIQLRKWGWMHH 372 Query: 352 RLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFN 410 R A FL + D+ + W G + F L+D D A NNG W W S + Y RI++ Sbjct: 373 LARHSVACFLTRGDMFIHWEKGRDVFERLLIDSDWAINNGNWMW-LSCSSFFYQYHRIYS 431 Query: 411 PTIQGKRFDPQGTFIRHWLPELNNVPTQYIH----APHSWLDKND--LSLNYPLPIVDHK 464 P GK++DP G +IRH++P L ++P +YI+ AP S K + + +YP P+VDH+ Sbjct: 432 PITFGKKYDPNGNYIRHFIPVLKDMPREYIYEPWTAPLSIQKKANCIIGKDYPKPVVDHE 491 Query: 465 ---KACHHTLNQYYAAKK 479 K C + + YA+ + Sbjct: 492 TASKECKKRMGEAYASSR 509 >gi|156393374|ref|XP_001636303.1| predicted protein [Nematostella vectensis] gi|156223405|gb|EDO44240.1| predicted protein [Nematostella vectensis] Length = 533 Score = 147 bits (370), Expect = 6e-33, Method: Compositional matrix adjust. Identities = 137/512 (26%), Positives = 225/512 (43%), Gaps = 62/512 (12%) Query: 5 TAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYAS 64 T +VH W RN LR+ DN AL A S V +++ P+ + I + FI S Sbjct: 6 THQTVH--WFRNGLRLHDNPALKEAFETSQT-VRPLYVLDPDVLKNGNIGVVRWRFILES 62 Query: 65 LLQVQ---KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDK 121 L + K L+ + V + F + L V R+ + ++ Sbjct: 63 LADLDNNLKKLNSRLFVVRGRPSEVFPKLFKEWKISKLTFEVDTTEPARKQDAEVLKIAN 122 Query: 122 LLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQA-DLRSLPVP 180 L ++ RV +D L+ + P Q++V + + P+P Sbjct: 123 KLGVDIEQRVSHTLYD----------LDRIVNKNGGTAPLTYKKFQSIVSSLGPPAAPLP 172 Query: 181 AIR---LTGPVTPS--------NIPRFFD----YPFQAIDPMFPIGEQNALHILRKFCKE 225 AI + G TP+ +P + P ++ + ++P GE AL L + K+ Sbjct: 173 AIDKKMVAGCNTPTTANHDKIYGVPTLEEIGQEVPEESREVLYPGGETEALERLEVYMKK 232 Query: 226 K--VYYYVEQRDIP-AIQ-GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSW 281 + V + + P +I+ T+ LSPY++ G LS R + RL E + K S Sbjct: 233 EDWVCKFEKPNTAPNSIEPSTTVLSPYMTYGCLSARLFYTRLAEIYAKKK-KHSQPPVSL 291 Query: 282 LNELIWREFYRHLMAFYP--------SVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGF 333 +L+WREF+ P S+C+ ++ W+++ L AW + TG+ Sbjct: 292 HGQLLWREFFTTAAYKTPNFNKMVGNSLCL---------QVPWDQNDEYLAAWAEARTGY 342 Query: 334 PIIDAAMRQLNTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGW 392 P IDA M QL GW+H+ R A FL + DL + W G + F L+D D N G W Sbjct: 343 PYIDAIMTQLRREGWVHHLARHSVACFLTRGDLWISWEEGLKVFERLLIDHDWNLNAGNW 402 Query: 393 QWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIH----APHSWLD 448 W +++ YFR+++P GK+ DP G +IR ++P+L+ P +YI+ AP + + Sbjct: 403 MWLSASSFFHA-YFRVYSPVAFGKKTDPNGDYIRKYIPKLSRYPPKYIYEPWNAPLAVQE 461 Query: 449 KND--LSLNYPLPIVDHKKACHHTLNQYYAAK 478 K + +YP PIVDH K +++ A+ Sbjct: 462 KAGCVIGRDYPCPIVDHNKVVTRNMSRMKEAR 493 >gi|261278636|pdb|3CVX|A Chain A, Drosophila Melanogaster (6-4) Photolyase H369m Mutant Bound To Ds Dna With A T-T (6-4) Photolesion Length = 543 Score = 146 bits (369), Expect = 6e-33, Method: Compositional matrix adjust. Identities = 140/515 (27%), Positives = 224/515 (43%), Gaps = 52/515 (10%) Query: 1 MKATTAMSVHLVWLRNDLRITDNKAL---YAACHNSDAK--VIAVFIATPE--QWRQHGI 53 M + + VH W R LR+ DN AL + A + + + V +FI P W Q + Sbjct: 24 MDSQRSTLVH--WFRKGLRLHDNPALSHIFTAANAAPGRYFVRPIFILDPGILDWMQ--V 79 Query: 54 SARQSHFIYASLLQVQ---KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNR 110 A + F+ +L + + L+ + V + F + RV L + Sbjct: 80 GANRWRFLQQTLEDLDNQLRKLNSRLFVVRGKPAEVFPRIFK-------SWRVEMLTFET 132 Query: 111 QYEINEVRRDKLLEKRLQHR-VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNL 169 E V RD ++K + V ++ + P ++ L + +++ L Sbjct: 133 DIEPYSVTRDAAVQKLAKAEGVRVETHCSHTIYNPELVIAKNLGKAPITYQKFLGIVEQL 192 Query: 170 -------VQADLRSLPVPAI-----RLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALH 217 V L+++P P + + + + P + FP GE AL Sbjct: 193 KVPKVLGVPEKLKNMPTPPKDEVEQKDSAAYDCPTMKQLVKRPEELGPNKFPGGETEALR 252 Query: 218 ILRKFCKEKVYYYVEQRDIPAIQG----TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIK 273 + + K++++ ++ A T+ LSPYL G LS R +LKE + K Sbjct: 253 RMEESLKDEIWVARFEKPNTAPNSLEPSTTVLSPYLKFGCLSARLFNQKLKE-IIKRQPK 311 Query: 274 PKSGAFSWLNELIWREFYRHLMAFYPSV--CMGKPFIPWTEKIEWNKDSHLLQAWKQGYT 331 S + +L+WREFY + A P+ +G + +I W + L+AW G T Sbjct: 312 HSQPPVSLIGQLMWREFYYTVAAAEPNFDRMLGNVY---CMQIPWQEHPDHLEAWTHGRT 368 Query: 332 GFPIIDAAMRQLNTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNG 390 G+P IDA MRQL GW+H+ RM A FL + DL + W G+ F LLD D A N G Sbjct: 369 GYPFIDAIMRQLRQEGWIHHLARMAVACFLTRGDLWISWEEGQRVFEQLLLDQDWALNAG 428 Query: 391 GWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAP--HSWLD 448 W W +++ YFR+++P GK+ DPQG +IR ++PEL+ P I+ P S +D Sbjct: 429 NWMWLSASAFFH-QYFRVYSPVAFGKKTDPQGHYIRKYVPELSKYPAGCIYEPWKASLVD 487 Query: 449 KND----LSLNYPLPIVDHKKACHHTLNQYYAAKK 479 + L +YP IV H+ + + AA K Sbjct: 488 QRAYGCVLGTDYPHRIVKHEVVHKENIKRMGAAYK 522 >gi|218190281|gb|EEC72708.1| hypothetical protein OsI_06300 [Oryza sativa Indica Group] Length = 551 Score = 146 bits (369), Expect = 6e-33, Method: Compositional matrix adjust. Identities = 108/324 (33%), Positives = 161/324 (49%), Gaps = 40/324 (12%) Query: 177 LPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFC--KEKVYYYVEQR 234 LPVP + G + D + + P F GE AL +R+ KE V + + + Sbjct: 208 LPVPRVEELG---------YGDISQEDLSP-FRGGETEALKRMRESLHDKEWVAKFEKPK 257 Query: 235 DIPAI---QGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFY 291 P+ T+ LSPYL G LS R ++ +++ + K + S +L+WR+F Sbjct: 258 GDPSAFLKPATTVLSPYLKFGCLSSRYFYHCIQDVYRSTK-KHTNPPVSLTGQLLWRDF- 315 Query: 292 RHLMAFYPSVCMGKPFIPW------TEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNT 345 FY +V G P ++I W ++ L AW+ G TG+P IDA M QL Sbjct: 316 -----FY-TVAFGTPNFDQMKGNKICKQIPWTENEELFPAWRDGRTGYPWIDAIMIQLRK 369 Query: 346 IGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVP 404 GWMH+ R A FL + DL + W G + F L+D D A NNG W W S + Sbjct: 370 WGWMHHLARHSVACFLTRGDLFIHWEKGRDVFERLLIDSDWAINNGNWMW-LSCSSFFYQ 428 Query: 405 YFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIH----APHSWLDKND--LSLNYPL 458 Y RI++PT GK++DP G +IRH++P L ++P +YI+ AP S K + + +YP Sbjct: 429 YHRIYSPTSFGKKYDPNGNYIRHFIPVLKDMPKEYIYEPWTAPLSIQKKANCIIGKDYPK 488 Query: 459 PIVDH---KKACHHTLNQYYAAKK 479 P+VDH K C + + YA+ + Sbjct: 489 PVVDHAIASKECKKMMGEAYASNR 512 >gi|297598791|ref|NP_001046243.2| Os02g0204400 [Oryza sativa Japonica Group] gi|306756329|sp|Q0E2Y1|UVR3_ORYSJ RecName: Full=(6-4)DNA photolyase gi|255670698|dbj|BAF08157.2| Os02g0204400 [Oryza sativa Japonica Group] Length = 551 Score = 146 bits (369), Expect = 7e-33, Method: Compositional matrix adjust. Identities = 107/326 (32%), Positives = 162/326 (49%), Gaps = 34/326 (10%) Query: 179 VPAIRLTGPVTPSNIPRFFDYPFQAID----PMFPIGEQNALHILRKFC--KEKVYYYVE 232 +P + TG +PR + + I +F GE AL +R+ KE V + + Sbjct: 196 LPPVGDTGEYELLPVPRVEELGYGDISQEDLSLFRGGETEALKRMRESLHDKEWVAKFEK 255 Query: 233 QRDIPAI---QGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWRE 289 + P+ T+ LSPYL G LS R ++ +++ + K + S +L+WR+ Sbjct: 256 PKGDPSAFLKPATTVLSPYLKFGCLSSRYFYHCIQDIYRSTK-KHTNPPVSLTGQLLWRD 314 Query: 290 FYRHLMAFYPSVCMGKPFIPW------TEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQL 343 F FY +V G P ++I W ++ L AW+ G TG+P IDA M QL Sbjct: 315 F------FY-TVAFGTPNFDQMKGNKICKQIPWTENEELFPAWRDGRTGYPWIDAIMIQL 367 Query: 344 NTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDS 402 GWMH+ R A FL + DL + W G + F L+D D A NNG W W S + Sbjct: 368 RKWGWMHHLARHSVACFLTRGDLFIHWEKGRDVFERLLIDSDWAINNGNWMW-LSCSSFF 426 Query: 403 VPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIH----APHSWLDKND--LSLNY 456 Y RI++PT GK++DP G +IRH++P L ++P +YI+ AP S K + + +Y Sbjct: 427 YQYHRIYSPTSFGKKYDPNGNYIRHFIPVLKDMPKEYIYEPWTAPLSIQKKANCIIGKDY 486 Query: 457 PLPIVDH---KKACHHTLNQYYAAKK 479 P P+VDH K C + + YA+ + Sbjct: 487 PKPVVDHAIASKECKKMMGEAYASNR 512 >gi|46390519|dbj|BAD16007.1| putative 6-4 photolyase (UVR3) [Oryza sativa Japonica Group] gi|51536259|dbj|BAD38427.1| putative 6-4 photolyase (UVR3) [Oryza sativa Japonica Group] Length = 560 Score = 146 bits (369), Expect = 7e-33, Method: Compositional matrix adjust. Identities = 108/325 (33%), Positives = 161/325 (49%), Gaps = 32/325 (9%) Query: 179 VPAIRLTGPVTPSNIPRFFDYPFQAID----PMFPIGEQNALHILRKFC--KEKVYYYVE 232 +P + TG +PR + + I +F GE AL +R+ KE V + + Sbjct: 205 LPPVGDTGEYELLPVPRVEELGYGDISQEDLSLFRGGETEALKRMRESLHDKEWVAKFEK 264 Query: 233 QRDIPAI---QGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWRE 289 + P+ T+ LSPYL G LS R ++ +++ + K + S +L+WR+ Sbjct: 265 PKGDPSAFLKPATTVLSPYLKFGCLSSRYFYHCIQDIYRSTK-KHTNPPVSLTGQLLWRD 323 Query: 290 FYRHLMAFYPSVCMGKPF-----IPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLN 344 F+ + P+ K IPWTE E L AW+ G TG+P IDA M QL Sbjct: 324 FFYTVAFGTPNFDQMKGNKICKQIPWTENEE------LFPAWRDGRTGYPWIDAIMIQLR 377 Query: 345 TIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSV 403 GWMH+ R A FL + DL + W G + F L+D D A NNG W W S + Sbjct: 378 KWGWMHHLARHSVACFLTRGDLFIHWEKGRDVFERLLIDSDWAINNGNWMW-LSCSSFFY 436 Query: 404 PYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIH----APHSWLDKND--LSLNYP 457 Y RI++PT GK++DP G +IRH++P L ++P +YI+ AP S K + + +YP Sbjct: 437 QYHRIYSPTSFGKKYDPNGNYIRHFIPVLKDMPKEYIYEPWTAPLSIQKKANCIIGKDYP 496 Query: 458 LPIVDH---KKACHHTLNQYYAAKK 479 P+VDH K C + + YA+ + Sbjct: 497 KPVVDHAIASKECKKMMGEAYASNR 521 >gi|212721834|ref|NP_001132651.1| hypothetical protein LOC100194126 [Zea mays] gi|194694998|gb|ACF81583.1| unknown [Zea mays] Length = 428 Score = 146 bits (369), Expect = 7e-33, Method: Compositional matrix adjust. Identities = 76/181 (41%), Positives = 107/181 (59%), Gaps = 7/181 (3%) Query: 288 REFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIG 347 RE+ R+L +PS +P + W D + W+QG TG+P++DA MR+L G Sbjct: 28 REYSRYLSFNHPS-SHERPLLAHLRFFPWVVDESYFKIWRQGRTGYPLVDAGMRELWATG 86 Query: 348 WMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFR 407 W+H+R+R++ ASF VK L + WR G +YF LLD DL S+ GWQ+ + D R Sbjct: 87 WLHDRIRVVVASFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYITGSLPDGRELDR 146 Query: 408 IFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIH----APHSWLDKNDLSL--NYPLPIV 461 I NP +G +FDP G ++R W+PEL +PT++IH AP S L + L NYPLPIV Sbjct: 147 IDNPQFEGYKFDPHGEYVRRWIPELARLPTEWIHHPWDAPVSVLQAAGIELGSNYPLPIV 206 Query: 462 D 462 + Sbjct: 207 E 207 >gi|18858473|ref|NP_571863.1| cryptochrome 5 [Danio rerio] gi|8698596|dbj|BAA96852.1| 6-4 photolyase [Danio rerio] Length = 519 Score = 146 bits (369), Expect = 7e-33, Method: Compositional matrix adjust. Identities = 140/490 (28%), Positives = 214/490 (43%), Gaps = 62/490 (12%) Query: 13 WLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQKSL 72 W R LR+ DN AL AA + + +F+ P + I + F+ +L + SL Sbjct: 8 WFRKGLRLHDNPALIAALKDC-RHIYPLFLLDPWFPKNTRIGINRWRFLIEALKDLDSSL 66 Query: 73 SQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHRVI 132 + + S E L Q ++T+L + E RDK + K + Sbjct: 67 KKLNSRLFVVRGS----PTEVLPKLFKQWKITRLTFEVDTEPYSQSRDKEVMK------L 116 Query: 133 CKSFDDSVLLPPGSIL---NHALQMYKVYTPFRKALIQNLVQA---DLRSLPVPAIR-LT 185 K + V L + + TP +Q++V+A + +P P + Sbjct: 117 AKEYGVEVTPKISHTLYNIDRIIDENNGKTPMTYIRLQSVVKAMGHPKKPIPAPTNEDMR 176 Query: 186 GPVTPSN--------IPRFFDYPF--QAIDP-MFPIGEQNALHILRKFCKEK--VYYYVE 232 G TP + IP D ++ P +FP GEQ AL L + + V + + Sbjct: 177 GVSTPLSDDHEEKFGIPTLEDLGLDTSSLGPHLFPGGEQEALRRLDEHMERTNWVCKFEK 236 Query: 233 QRDIPA--IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREF 290 + P I T+ LSPY+ G LS R W RL + + S +L+WREF Sbjct: 237 PKTSPNSLIPSTTVLSPYVRFGCLSARTFWWRLADVYRGKTHS--DPPVSLHGQLLWREF 294 Query: 291 YRHLMAFYP--------SVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQ 342 + P S C+ +++W+ + L AW++ TGFP ID M Q Sbjct: 295 FYTTAVGIPNFNKMEGNSACV---------QVDWDNNPEHLAAWREARTGFPFIDTIMTQ 345 Query: 343 LNTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQW-AASTGN 400 L GW+H+ R A FL + DL + W G++ F LLD D + N G WQW +AST Sbjct: 346 LRQEGWIHHLARHAVACFLTRGDLWISWEEGQKVFEELLLDSDWSLNAGNWQWLSASTFF 405 Query: 401 DSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIH----APHSWLDKND--LSL 454 YFR+++P GK+ D G +I+ +LP L PT+YI+ AP S ++ + Sbjct: 406 HQ--YFRVYSPIAFGKKTDKHGDYIKKYLPVLKKFPTEYIYEPWKAPRSVQERAGCIVGK 463 Query: 455 NYPLPIVDHK 464 +YP PIVDH+ Sbjct: 464 DYPRPIVDHE 473 >gi|261278633|pdb|3CVW|A Chain A, Drosophila Melanogaster (6-4) Photolyase H365n Mutant Bound To Ds Dna With A T-T (6-4) Photolesion And Cofactor F0 Length = 543 Score = 146 bits (368), Expect = 8e-33, Method: Compositional matrix adjust. Identities = 140/515 (27%), Positives = 223/515 (43%), Gaps = 52/515 (10%) Query: 1 MKATTAMSVHLVWLRNDLRITDNKAL---YAACHNSDAK--VIAVFIATPE--QWRQHGI 53 M + + VH W R LR+ DN AL + A + + + V +FI P W Q + Sbjct: 24 MDSQRSTLVH--WFRKGLRLHDNPALSHIFTAANAAPGRYFVRPIFILDPGILDWMQ--V 79 Query: 54 SARQSHFIYASLLQVQ---KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNR 110 A + F+ +L + + L+ + V + F + RV L + Sbjct: 80 GANRWRFLQQTLEDLDNQLRKLNSRLFVVRGKPAEVFPRIFK-------SWRVEMLTFET 132 Query: 111 QYEINEVRRDKLLEKRLQHR-VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNL 169 E V RD ++K + V ++ + P ++ L + +++ L Sbjct: 133 DIEPYSVTRDAAVQKLAKAEGVRVETHCSHTIYNPELVIAKNLGKAPITYQKFLGIVEQL 192 Query: 170 -------VQADLRSLPVPAI-----RLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALH 217 V L+++P P + + + + P + FP GE AL Sbjct: 193 KVPKVLGVPEKLKNMPTPPKDEVEQKDSAAYDCPTMKQLVKRPEELGPNKFPGGETEALR 252 Query: 218 ILRKFCKEKVYYYVEQRDIPAIQG----TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIK 273 + + K++++ ++ A T+ LSPYL G LS R +LKE + K Sbjct: 253 RMEESLKDEIWVARFEKPNTAPNSLEPSTTVLSPYLKFGCLSARLFNQKLKE-IIKRQPK 311 Query: 274 PKSGAFSWLNELIWREFYRHLMAFYPSV--CMGKPFIPWTEKIEWNKDSHLLQAWKQGYT 331 S + +L+WREFY + A P+ +G + +I W + L+AW G T Sbjct: 312 HSQPPVSLIGQLMWREFYYTVAAAEPNFDRMLGNVY---CMQIPWQEHPDHLEAWTHGRT 368 Query: 332 GFPIIDAAMRQLNTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNG 390 G+P IDA MRQL GW+HN R A FL + DL + W G+ F LLD D A N G Sbjct: 369 GYPFIDAIMRQLRQEGWIHNLARHAVACFLTRGDLWISWEEGQRVFEQLLLDQDWALNAG 428 Query: 391 GWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAP--HSWLD 448 W W +++ YFR+++P GK+ DPQG +IR ++PEL+ P I+ P S +D Sbjct: 429 NWMWLSASAFFH-QYFRVYSPVAFGKKTDPQGHYIRKYVPELSKYPAGCIYEPWKASLVD 487 Query: 449 KND----LSLNYPLPIVDHKKACHHTLNQYYAAKK 479 + L +YP IV H+ + + AA K Sbjct: 488 QRAYGCVLGTDYPHRIVKHEVVHKENIKRMGAAYK 522 >gi|187608706|ref|NP_001120012.1| hypothetical protein LOC100144974 [Xenopus (Silurana) tropicalis] gi|165970470|gb|AAI58310.1| LOC100144974 protein [Xenopus (Silurana) tropicalis] Length = 531 Score = 146 bits (368), Expect = 8e-33, Method: Compositional matrix adjust. Identities = 141/508 (27%), Positives = 218/508 (42%), Gaps = 64/508 (12%) Query: 8 SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67 S+H W R LR+ DN AL AA N A++ +FI P R +S + F+ +L Sbjct: 5 SIH--WFRKGLRLHDNPALLAAM-NDCAELYPIFILDPWFPRNMKVSVNRWRFLIEALKD 61 Query: 68 VQKSLSQ-KGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK- 125 + ++L + +F E + +VT+L + E +RD +EK Sbjct: 62 LDENLKKINSRLFVVR-----GKPTEVFPLLFKKWKVTRLTFEVDTEPYSRQRDADVEKL 116 Query: 126 RLQHRV------------ICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQAD 173 +H V I + ++ PP + + + + P R +Q Q + Sbjct: 117 AAEHNVQVIQKVSNTLYAIDRIIAENNGKPPLTYVRFQTVLASLGPPKRP--VQVPTQEN 174 Query: 174 LRSL------------PVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRK 221 ++ VP + G + PR ++P GE AL L Sbjct: 175 MKDCCTLWKSSYNEKYGVPTLEELGQDSLKLGPR-----------LYPGGESEALSRLEL 223 Query: 222 FCKEKV----YYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSG 277 K + E T+ LSPY+ G LS R W R+ E + K Sbjct: 224 HMKRTTWVCNFKKPETEPNSLTPSTTVLSPYVKFGCLSARTFWWRIAEIYQGK--KHSDP 281 Query: 278 AFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIID 337 S +L+WREF+ P+ + I + ++W + LQAW +G TG+P ID Sbjct: 282 PVSLHGQLLWREFFYTAGVGIPNFNKMEGNIVCVQ-VDWGNNKEHLQAWSEGRTGYPFID 340 Query: 338 AAMRQLNTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQW-A 395 A M QL T GW+H+ R A FL + DL + W G++ F LLD D + N G WQW + Sbjct: 341 AIMTQLRTEGWIHHLARHAVACFLTRGDLWISWEEGQKVFEELLLDADWSLNAGNWQWLS 400 Query: 396 ASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIH----APHSWLDKND 451 AST +FR+++P GK+ D G +I+ +LP L P +YI+ AP S ++ Sbjct: 401 ASTFFHQ--FFRVYSPVAFGKKTDKNGDYIKKYLPILKKFPAEYIYEPWKAPRSLQERAG 458 Query: 452 --LSLNYPLPIVDHKKACHHTLNQYYAA 477 + +YP PIV+H A + + AA Sbjct: 459 CIIGKDYPKPIVEHDVASKQNIQRMKAA 486 >gi|159479960|ref|XP_001698054.1| cryptochrome photoreceptor [Chlamydomonas reinhardtii] gi|158273853|gb|EDO99639.1| cryptochrome photoreceptor [Chlamydomonas reinhardtii] Length = 595 Score = 146 bits (368), Expect = 9e-33, Method: Compositional matrix adjust. Identities = 91/252 (36%), Positives = 132/252 (52%), Gaps = 18/252 (7%) Query: 241 GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPS 300 T+ LSPYL G LS R RL E + + S +L+WREF+ + + P+ Sbjct: 249 ATTVLSPYLKFGCLSARLFHARLLEVYRRHPAHSQP-PVSLRGQLLWREFFYTVGSTTPN 307 Query: 301 V--CMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITA 358 G P ++I+W+ + L AW++ TGFP IDA M QL T GWMH+ R A Sbjct: 308 FHRMAGNPVC---KQIDWDDNPEFLAAWREARTGFPWIDAIMTQLVTWGWMHHLARHSVA 364 Query: 359 SFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKR 417 FL + DL V W G E F L+D D N W W +++ S YFR+++P + GK+ Sbjct: 365 CFLTRGDLYVSWERGMEVFEEHLIDQDHYLNAANWMWLSASAFFS-QYFRVYSPVVFGKK 423 Query: 418 FDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND--------LSLNYPLPIVDHKKACHH 469 +DP+G FIR +LP L ++P +YI+ P W + + +YP PIVDH A Sbjct: 424 YDPEGRFIRKFLPVLKDMPAKYIYEP--WTAPLEVQRKAGCVVGRDYPAPIVDHAVASKA 481 Query: 470 TLNQYYAAKKQS 481 + + AA ++S Sbjct: 482 CIARMAAAYRRS 493 Score = 40.0 bits (92), Expect = 0.76, Method: Compositional matrix adjust. Identities = 25/69 (36%), Positives = 37/69 (53%), Gaps = 5/69 (7%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAK-VIAVFIATPE--QWRQHGISARQSHFIYASLLQ 67 ++W R LR+ DN AL AC DAK V VF+ P Q + +S + +F+ SL Sbjct: 8 IIWFRKGLRLHDNPALLEAC--KDAKHVYPVFVLDPHFLQQSSYKVSVNRYNFLLESLED 65 Query: 68 VQKSLSQKG 76 +Q+S +G Sbjct: 66 LQRSFQARG 74 >gi|210136298|gb|ACJ08741.1| cryptochrome [Sarcophaga bullata] Length = 542 Score = 145 bits (367), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 138/512 (26%), Positives = 223/512 (43%), Gaps = 64/512 (12%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKV--IAVFIATPEQWRQHGISARQSHFIYAS 64 MS++++W R+ LR+ DN AL A + D + + +FI E + + F+ S Sbjct: 1 MSLNIIWFRHGLRLHDNPALLDAISDKDEGIELLPIFIFDGESAGTQSVGYNRLKFLLDS 60 Query: 65 LLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLE 124 L + L + + ++ S Q+ + KL + + E RRD + Sbjct: 61 LEDINNQLRSVSLSLGRLYIMK-GNPVQIFRSLHEQRGIKKLCFEQDCEPIWNRRDNAV- 118 Query: 125 KRLQHR--VICKSFDDSVLLPPGSILN--------------HALQMYKVYTPFRKALIQN 168 K L H + C L P ++N H +Q+ + P R + Sbjct: 119 KNLCHDLGITCIERISHTLWDPKKVINTNGGIPPLTYQMFLHTVQI--IGLPPRPVPDPD 176 Query: 169 LVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPI----GEQNAL-HILRKFC 223 L I+ G S P F ++ + + GE AL H+ ++ Sbjct: 177 WHNVKFVKLSEKLIKDLGVFLESPTPEDFSVYPDSLSYLAKVKWIGGETQALLHLDQRLK 236 Query: 224 KE----KVYYYVEQRDIPAI-QGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPK--- 275 E K YY+ + P I + +S +L G LS R+ + + + F D+ + + Sbjct: 237 VEESAFKCGYYLPNQAKPNILESPKSMSAHLRFGCLSVRKFYWDVHDLFKDVQQQAECLG 296 Query: 276 ---SGAFSWLNELIWREFYRHLMAFYPS--------VCMGKPFIPWTEKIEWNKDSHL-L 323 SG +LIWRE++ + P+ +C+ IPW E +H+ L Sbjct: 297 MLMSGGAHITGQLIWREYFYTMSVNNPNYDRMEGNEICLN---IPWAET------NHIQL 347 Query: 324 QAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLD 382 Q W QG TGFP+IDAAMRQL GW+H+ LR A+FL + L +W G YF+ LLD Sbjct: 348 QRWTQGKTGFPLIDAAMRQLLAEGWLHHTLRNTVATFLTRGGLWQNWEHGLRYFLKYLLD 407 Query: 383 GDLASNNGGWQWAASTGNDSVPYFRIFN-PTIQGKRFDPQGTFIRHWLPELNNVPTQYIH 441 D + G W W +S+ + + + P KR DP G +I+ ++PEL NVP +YIH Sbjct: 408 ADWSVCAGNWMWVSSSAFERLLDSSLVTCPIALAKRLDPMGQYIKQYVPELANVPKEYIH 467 Query: 442 A----PHSWLDKND--LSLNYPLPIVDHKKAC 467 P + + +D + ++YP ++D AC Sbjct: 468 EPWRMPMNIQEDSDCVIGIHYPERLIDLNVAC 499 >gi|78185218|ref|YP_377653.1| deoxyribodipyrimidine photolyase [Synechococcus sp. CC9902] gi|78169512|gb|ABB26609.1| Deoxyribodipyrimidine photo-lyase type I [Synechococcus sp. CC9902] Length = 496 Score = 145 bits (366), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 135/484 (27%), Positives = 213/484 (44%), Gaps = 49/484 (10%) Query: 8 SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67 ++ +VW + DLRI D++ L A + V+ +++ W+Q S RQ F SLL Sbjct: 3 ALQIVWFKRDLRIVDHRPLIEA--SKRGPVLPLYVVETRLWQQPDSSKRQWLFCRESLLD 60 Query: 68 VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEIN-EVRRDKLLEKR 126 +Q++L+ G D +E L+ LQ + L+ + + +RDK + Sbjct: 61 LQRALATLGQPLVLRS----GDVVEVLERARLQFGIDALWSHEETGNGWTYQRDKRVGAW 116 Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 + IC V +P + + + + + + Q P RL G Sbjct: 117 AKQHGIC-----WVEIPQFGVTRRLTSRNGWAKRWEEQMAEPITQP-----PTSLPRLDG 166 Query: 187 PVTPSNIPRFFDYPFQAIDPMFPI------GEQNALHILRKFCKEKVYYYVEQRDIP--A 238 + P IP D P AI P P G + R F ++V Y P A Sbjct: 167 -LDPGKIP---DLPPGAIAPD-PCPHRQLGGRRQGELEFRDFLNQRVERYCSSISSPNKA 221 Query: 239 IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFY 298 G S+LS YL+ G LS R+ + + +K + G S+ + L W + + Sbjct: 222 FTGCSRLSAYLTWGCLSMREVLQQSR------TVKGR-GVNSFGSRLHWHCHFIQKLEDE 274 Query: 299 PSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITA 358 PS+ + F P + + D LQAW +G TG P +DA MR L GW++ R+R + Sbjct: 275 PSIEF-QDFHPLMRGLR-DFDRVKLQAWAEGRTGVPFVDACMRALRAHGWINFRMRAMLM 332 Query: 359 SFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGW-QWAASTGNDSVPYFRIFNPTIQGKR 417 SF +L + WR + Q +D + + W Q +G+ S+ RI+NP QG+ Sbjct: 333 SFASYNLWLPWRQSGLHLARQFVDYEPGIH---WSQCQMQSGSTSINTIRIYNPIKQGRD 389 Query: 418 FDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477 DP+G FIRHW PEL +VP YIH P W +L P PIVD + N+ ++ Sbjct: 390 HDPEGLFIRHWCPELRDVPEIYIHEP--W----ELGGGMPSPIVDVTASMQEAKNRIWSI 443 Query: 478 KKQS 481 ++ + Sbjct: 444 RRSA 447 >gi|298708263|emb|CBJ48326.1| cryptochrome 3 [Ectocarpus siliculosus] Length = 549 Score = 145 bits (366), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 132/478 (27%), Positives = 217/478 (45%), Gaps = 52/478 (10%) Query: 8 SVHLVWLR-NDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHG------ISARQSHF 60 ++ +VW + DLR+ D++ L A H + + V VF ++W H +SA + F Sbjct: 22 TIGVVWFKCTDLRLEDHEPL-ALAHRNSSHVAHVFC-IDDRWFGHSRRGTRRMSAARCRF 79 Query: 61 IYASLLQVQKSLSQKG---IVFQYHQCSNFDDSIEWLDSYCLQQRVTKL--FYNRQYEIN 115 + S+ +Q L KG ++ + H + L S V + + +++ Sbjct: 80 LLESVADLQTRLRAKGSDLLIRRGHPENAIPAVAARLGSGASAVTVYAHPDLCSEENDVH 139 Query: 116 EVRRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMY--------KVYTPFRKALIQ 167 + L V + SV G+ L+ + +V+TPFRKA+ Sbjct: 140 AAVKSALSLVGSAGGVGGDATGVSVTEVWGNTLHDPSDLPYDFPNGLPEVFTPFRKAVEP 199 Query: 168 NLVQADLRS--------LPVPAIRLTGPVTPS---NIPRFFDYPFQAIDPM-------FP 209 N +RS P+PA VTP+ IP + F Sbjct: 200 N---CKIRSPVPLPSPFRPLPAGLHDNAVTPTLTVAIPTTEELGLGTAPERDARSVLHFI 256 Query: 210 IGEQNALHILRKFCKEKVY---YYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEE 266 GE L ++ + E+ + Y V + + +S+ SP+L++G LSPR +++ Sbjct: 257 GGETAGLRRVQTYIWEEDHLREYKVTRNGLLGGGFSSKFSPWLALGCLSPRTIVKEIRKY 316 Query: 267 FVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVC--MGKPFIPWTEKIEWNKDSHLLQ 324 D + + + + EL+ R+F+R+ Y + +G +++ W D+ LL Sbjct: 317 ETDRIANDST--YWLIFELLVRDFFRYSAVKYGNAIFHLGGSRRD-SDRQTWRDDAGLLA 373 Query: 325 AWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGD 384 AWK+G TG+P +DA MR+L G+M NR R + ASF KDL +DWR+G E+F LLD D Sbjct: 374 AWKEGRTGYPFVDANMRELKASGFMSNRGRQVVASFFTKDLEMDWRLGAEHFEEYLLDYD 433 Query: 385 LASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHA 442 ASN G W + A G D R F+ Q + +D G ++RHWLPEL + T+ + + Sbjct: 434 PASNYGNWNYVAGVGFDPRED-RYFSVEKQARTYDADGDYVRHWLPELAMLTTEALQS 490 >gi|156378195|ref|XP_001631029.1| predicted protein [Nematostella vectensis] gi|156218062|gb|EDO38966.1| predicted protein [Nematostella vectensis] Length = 498 Score = 145 bits (366), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 140/509 (27%), Positives = 222/509 (43%), Gaps = 72/509 (14%) Query: 8 SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67 SVH W R LR+ DN+ L A SD +F + +S F+ SL Sbjct: 4 SVH--WFRKGLRLHDNEPLRRAIEGSDT-FRGIFFLDKAAVKNAKVSPNGWRFLIESLRD 60 Query: 68 VQKSLSQ---KGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD---- 120 + +SL + + + Q F I+ Q ++KL + E +RD Sbjct: 61 LDQSLQKYNSRLFIIQGQPIDVFPKLIK-------QWNISKLTFEYDSEPFPRQRDLAVK 113 Query: 121 KLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSL--- 177 ++ EK ++C S L + L+M + P L ++ +A +R L Sbjct: 114 RIAEKAGVDVIVCSSHT----LYDIECIEQILEMNEGKPP---VLFKDF-EAIVRKLGPP 165 Query: 178 --PVPAI------RLTGPVTPS-----NIPRFFDYPFQAID----PMFPIGEQNALHILR 220 PV +I P+T + +P + + D M+ GE+ AL+ L Sbjct: 166 ENPVESITRKSFMNCICPITSTHSEKFGVPSLAELGIKPADVTCGDMWVGGEREALNRL- 224 Query: 221 KFCKEKVYYYVEQRDIPA----IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKS 276 ++K+ ++ +QLSPYL G LSP+ + +L +V + P Sbjct: 225 GILEDKILGSNSSKNCDGSSVLFPSRTQLSPYLRFGCLSPKLYYKKLTGAYVKMQFSPP- 283 Query: 277 GAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPII 336 S +LIWREF+ L + P++ P +I W ++ WKQG TGFP I Sbjct: 284 -PMSLYRQLIWREFFFTLASKNPNMDQVNDN-PLCIQISWEENKDHFLCWKQGNTGFPWI 341 Query: 337 DAAMRQLNTIGWMHNRLRMITASFLVKDLL-VDWRIGEEYFMSQLLDGDLASNNGGWQWA 395 DA MRQL GW+H+ R+ FL + L + W G F LD + + N+G W W Sbjct: 342 DAIMRQLQKEGWIHHLARLSVGCFLTRGCLWISWEEGLRAFEELQLDAEWSMNSGSWLWL 401 Query: 396 ASTG--NDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND-- 451 + + + +P+ F P GK+ DP G++IR ++PEL ++P +Y++ P W +D Sbjct: 402 SCSAFFHGQIPW---FCPVEVGKKLDPSGSYIRKYVPELRSMPLKYLYEP--WTAPDDIQ 456 Query: 452 ------LSLNYPLPIVDH---KKACHHTL 471 + +YP PIVDH +KAC L Sbjct: 457 RAAMCVIGEDYPHPIVDHIEQRKACLQRL 485 >gi|183986194|gb|AAI66277.1| LOC100144974 protein [Xenopus (Silurana) tropicalis] Length = 531 Score = 145 bits (366), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 141/516 (27%), Positives = 219/516 (42%), Gaps = 80/516 (15%) Query: 8 SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67 S+H W R LR+ DN AL AA + A++ +FI P R +S + F+ +L Sbjct: 5 SIH--WFRKGLRLHDNPALLAAMKDC-AELYPIFILDPWFPRNMKVSVNRWRFLIEALKD 61 Query: 68 VQKSLSQ-KGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK- 125 + ++L + +F E + +VT+L + E +RD +EK Sbjct: 62 LDENLKKINSRLFVVR-----GKPTEVFPLLFKKWKVTRLTFEVDTEPYSRQRDADVEKL 116 Query: 126 RLQHRV------------ICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQAD 173 +H V I + ++ PP + + + + P R +Q Q + Sbjct: 117 AAEHNVQVIQKVSNTLYAIDRIIAENNGKPPLTYVRFQTVLASLGPPKRP--VQVPTQEN 174 Query: 174 LRSL------------PVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRK 221 ++ VP + G + PR ++P GE AL L Sbjct: 175 MKDCCTLWKSSYNEKYGVPTLEELGQDSLKLGPR-----------LYPGGESEALSRLEL 223 Query: 222 FCKEKV----YYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSG 277 K + E T+ LSPY+ G LS R W R+ E + K Sbjct: 224 HMKRTTWVCNFKKPETEPNSLTPSTTVLSPYVKFGCLSARTFWWRIAEIYQGK--KHSDP 281 Query: 278 AFSWLNELIWREFYRHLMAFYP--------SVCMGKPFIPWTEKIEWNKDSHLLQAWKQG 329 S +L+WREF+ P +VC+ +++W + LQAW +G Sbjct: 282 PVSLHGQLLWREFFYTAGVGIPNFNKMEGNTVCV---------QVDWGNNKEHLQAWSEG 332 Query: 330 YTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASN 388 TG+P IDA M QL T GW+H+ R A FL + DL + W G++ F LLD D + N Sbjct: 333 RTGYPFIDAIMTQLRTEGWIHHLARHAVACFLTRGDLWISWEEGQKVFEELLLDADWSLN 392 Query: 389 NGGWQW-AASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIH----AP 443 G WQW +AST +FR+++P GK+ D G +I+ +LP L P +YI+ AP Sbjct: 393 AGNWQWLSASTFFHQ--FFRVYSPVAFGKKTDKNGDYIKKYLPILKKFPAEYIYEPWKAP 450 Query: 444 HSWLDKND--LSLNYPLPIVDHKKACHHTLNQYYAA 477 S ++ + +YP PIV+H A + + AA Sbjct: 451 RSLQERAGCIIGKDYPKPIVEHDVASKQNIQRMKAA 486 >gi|325180456|emb|CCA14862.1| cryptochrome putative [Albugo laibachii Nc14] Length = 639 Score = 145 bits (366), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 107/336 (31%), Positives = 164/336 (48%), Gaps = 41/336 (12%) Query: 184 LTGPVTPSNIPRFFDYPFQAIDPMFPI--GEQNALHILRKFCKEK--VYYYVEQRDIPA- 238 + GP +P ++ F+ I GE AL IL+ +CK + V + + + PA Sbjct: 280 IAGPEKLFRVPELSEFGFEKPGRHSFIYGGENIALKILQTYCKNEGQVVKFEKPKTSPAE 339 Query: 239 ---IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLM 295 + T+ LSPYL G +S R ++R+++ + S +L+WREF+ Sbjct: 340 TCPSKSTTSLSPYLYFGCMSTRTFYHRVRDIQNRHAKASSAPPVSLDGQLLWREFFHCNG 399 Query: 296 AFYPSV--CMGKP---FIPW---------TEKIEWNKDSHL----LQAWKQGYTGFPIID 337 P G P +I W E+ +D L +AWK+G TG+P ID Sbjct: 400 HANPQFDKMEGNPLCLYIDWRWHTLPSTKEEEDALPEDEKLAKAQFEAWKEGQTGYPWID 459 Query: 338 AAMRQLNTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAA 396 A M QL GWMH+ R A FL + DL + W G E F +L+D D + N G W W + Sbjct: 460 AIMIQLKEEGWMHHLARHSVACFLTRGDLYISWVRGLEVFQERLIDHDWSINCGNWLWLS 519 Query: 397 STGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSW--------LD 448 ++ + YFR+++P+ GK++D +G FIR ++P L +P++YI+ P W L Sbjct: 520 ASAFFTA-YFRVYSPSTFGKKWDAEGKFIRKYIPALAKMPSKYIYEP--WKAPVTVQRLA 576 Query: 449 KNDLSLNYPLPIVDHKKA---CHHTLNQYYAAKKQS 481 + +YP PIVDHK A C + YAA++ S Sbjct: 577 NCLVGKDYPFPIVDHKIAMRRCMAGMKASYAARRYS 612 >gi|1304062|dbj|BAA12067.1| photolyase [Drosophila melanogaster] Length = 540 Score = 145 bits (365), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 145/518 (27%), Positives = 226/518 (43%), Gaps = 58/518 (11%) Query: 1 MKATTAMSVHLVWLRNDLRITDNKAL---YAACHNSDAK--VIAVFIATPE--QWRQHGI 53 M + + VH W R LR+ DN AL + A + + K V +FI P W Q + Sbjct: 1 MDSQRSTLVH--WFRKGLRLHDNPALSHIFTAANAAPGKYFVRPIFILDPGILDWMQ--V 56 Query: 54 SARQSHFIYASLLQVQ---KSLSQKGIVFQYHQCSNFDDSIE-WLDSYCLQQRVTKLFYN 109 A + F+ +L + + L+ + V + F + W RV L + Sbjct: 57 GANRWRFLQQTLEDLDNQLRKLNSRLFVVRGKPAEVFPRIFKSW--------RVEMLTFE 108 Query: 110 RQYEINEVRRDKLLEKRLQHR-VICKSFDDSVLLPPGSILNHALQMYKVYTPFRK--ALI 166 E V RD ++K + V ++ + P L A + K ++K ++ Sbjct: 109 TDIEPYSVTRDAAVQKLAKAEGVRVETHCSHTIYNPE--LVKAKNLGKAPITYQKFLGIV 166 Query: 167 QNL-------VQADLRSLPVPAI-----RLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQN 214 + L V L+ +P P + + I + P + FP GE Sbjct: 167 EQLKVPKVLGVPEKLKKMPTPPKDEVEQKDSAAYDCPTIKQLVKRPEELGPNKFPGGETE 226 Query: 215 ALHILRKFCKEKVYYYVEQRDIPAIQG----TSQLSPYLSIGVLSPRQCWNRLKEEFVDL 270 AL + + K++++ ++ A T+ LSPYL G LS R +LKE + Sbjct: 227 ALRRMEESLKDEIWVARFEKPNTAPNSLEPSTTVLSPYLKFGCLSARLFNQKLKE-IIKR 285 Query: 271 LIKPKSGAFSWLNELIWREFYRHLMAFYPSV--CMGKPFIPWTEKIEWNKDSHLLQAWKQ 328 K S + +L+WREFY + A P+ +G + +I W + L+AW Sbjct: 286 QPKHSQPPVSLIGQLMWREFYYTVAAAEPNFDRMLGNVYC---MQIPWQEHPDHLEAWTH 342 Query: 329 GYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLAS 387 G TG+P IDA MRQL GW+H+ R A FL + DL + W G+ F LLD D A Sbjct: 343 GRTGYPFIDAIMRQLRQEGWIHHLARHAVACFLTRGDLWISWEEGQRVFEQLLLDQDWAL 402 Query: 388 NNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAP--HS 445 N G W W +++ YFR+++P GK+ DPQG +IR ++PEL+ P I+ P S Sbjct: 403 NAGNWMWLSASAFFHQ-YFRVYSPVAFGKKTDPQGHYIRKYVPELSKYPATCIYEPWKAS 461 Query: 446 WLDKND----LSLNYPLPIVDHKKACHHTLNQYYAAKK 479 +D+ L +YP IV H+ + + AA K Sbjct: 462 LVDQRAYGCVLGTDYPHRIVKHEVVHKENIKRMGAAYK 499 >gi|195484786|ref|XP_002090823.1| GE12583 [Drosophila yakuba] gi|194176924|gb|EDW90535.1| GE12583 [Drosophila yakuba] Length = 540 Score = 145 bits (365), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 138/512 (26%), Positives = 218/512 (42%), Gaps = 46/512 (8%) Query: 1 MKATTAMSVHLVWLRNDLRITDNKAL---YAACHNSDAK--VIAVFIATPE--QWRQHGI 53 M A + VH W R LR+ DN AL ++A + + K V +FI P W Q + Sbjct: 1 MDAQRSTLVH--WFRKGLRVHDNPALSQIFSAANAAPGKYFVRPIFILDPGILDWMQ--V 56 Query: 54 SARQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYE 113 A + F+ +L + L + + D S+ RV L + E Sbjct: 57 GANRWRFLQQTLEDLDNQLRKLNSRLFVVRGKPADVFPRIFKSW----RVEILSFETDIE 112 Query: 114 INEVRRDKLLEKRLQHR-VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQA 172 + RD ++K + V +++ + P ++ L + +++ L Sbjct: 113 PYSMTRDAAVQKLAKTEGVKVETYCSHTIYNPELVIAKNLGKAPITYQKFLGIVEQLKLP 172 Query: 173 DLRSLPVPAIRLTGPVTPS------------NIPRFFDYPFQAIDPMFPIGEQNALHILR 220 + P +T P + + P + FP GE AL + Sbjct: 173 KVLGSPEKLTNITSPPKDEVEQEDLAAYDCPTMEQLVKRPEELGPNKFPGGETEALRRME 232 Query: 221 KFCKEKVYYYVEQRDIPAIQG----TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKS 276 K++++ ++ A T+ LSPYL G LS R + +L E + K Sbjct: 233 DSLKDEIWVARFEKPNTAPNSLEPSTTVLSPYLKFGCLSARLFYQKLTE-IIKRQSKHSQ 291 Query: 277 GAFSWLNELIWREFYRHLMAFYPSV--CMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFP 334 S + +L+WREFY + A P+ +G + +I W + L+AW G TG+P Sbjct: 292 PPVSLIGQLMWREFYYTVAAAEPNFDRMLGNVY---CMQIPWQEHPDHLEAWTHGRTGYP 348 Query: 335 IIDAAMRQLNTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQ 393 IDA MRQL GW+H+ R A FL + DL + W G+ F LLD D A N G W Sbjct: 349 FIDAIMRQLRQEGWIHHLARHAVACFLTRGDLWISWEEGQRVFEQLLLDQDWALNAGNWM 408 Query: 394 WAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAP--HSWLDKND 451 W +++ YFR+++P GK+ DPQG +IR ++PEL+ P+ I+ P S D+ Sbjct: 409 WLSASAF-FYQYFRVYSPVAFGKKTDPQGHYIRKYVPELSKYPSGCIYEPWKASLADQRA 467 Query: 452 ----LSLNYPLPIVDHKKACHHTLNQYYAAKK 479 L +YP IV H+ + + AA K Sbjct: 468 YGCVLGTDYPHRIVKHEVVHKDNIKRMGAAYK 499 >gi|168002746|ref|XP_001754074.1| UVR3 AtUVR3-like 6-4 DNA photolyase protein [Physcomitrella patens subsp. patens] gi|162694628|gb|EDQ80975.1| UVR3 AtUVR3-like 6-4 DNA photolyase protein [Physcomitrella patens subsp. patens] Length = 526 Score = 144 bits (364), Expect = 3e-32, Method: Compositional matrix adjust. Identities = 143/518 (27%), Positives = 224/518 (43%), Gaps = 63/518 (12%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATP---------EQWRQHGISARQSHFI 61 L+W R LR+ DN AL +C + + V VF+ P + + F+ Sbjct: 6 LMWFRKGLRLHDNPALLRSCEGA-SHVYPVFVLDPWFLAPDPTAPSPGSKLVGVNRIRFL 64 Query: 62 YASLLQVQKSLSQKG---IVFQYHQCSNFDDSI-EW-LDSYCLQQRVTKLFYNRQYEINE 116 SL + ++L + G +V + + + + +W ++ C + +R +I + Sbjct: 65 LQSLEDLDENLRKHGSRLLVLHGNPTTVIPELLMKWQINELCFEFDTEPYAQDRDADIKK 124 Query: 117 VRRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNL--VQADL 174 + +E + ++ P +I + Q Y F K + V A L Sbjct: 125 LATKYGVE-------VFSPVSHTLFNPIDTIRKNGGQTPLTYQAFLKLTGKPPLPVTAPL 177 Query: 175 RSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMF---PIGEQNALHILRKFCKEK--VYY 229 + +P P L V +P+ D + +D F P GE AL L K + V Sbjct: 178 Q-IPSPPEDLND-VHVVPVPKLEDLGYVNLDEEFSPHPGGETEALRRLDKSLVNQKWVCD 235 Query: 230 YVEQRDIPAI---QGTSQLSPYLS------------IGVLSPRQCWNRLKEEFVDLLIKP 274 + + + P T+ LSPYL G LS R RL + K Sbjct: 236 FEKPKGNPTAFIEPATTVLSPYLKASNLGFLLKPMLFGCLSCRLFHQRLLAVYSQN-KKH 294 Query: 275 KSGAFSWLNELIWREFYRHLMAFYPSV--CMGKPFIPWTEKIEWNKDSHLLQAWKQGYTG 332 S S +L+WREF+ P+ +G P ++I W D LL AW+ G TG Sbjct: 295 SSPPVSLEGQLLWREFFYTAGYGTPNFDRMLGNPI---CKQIPWKDDDRLLAAWRDGQTG 351 Query: 333 FPIIDAAMRQLNTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGG 391 +P IDAAM QL GWMH+ R A FL + D+ V W G + F L+D D A NNG Sbjct: 352 YPWIDAAMVQLRKWGWMHHLARHAVACFLTRGDMFVYWEKGRDVFDRLLIDSDWAINNGN 411 Query: 392 WQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIH----APHSWL 447 W W +++ Y RI++P GK++DP G +++H+LP L ++P YI+ AP + Sbjct: 412 WLWLSASAFFHQ-YHRIYSPVTFGKKYDPDGLYVKHFLPVLKDMPKYYIYEPWTAPLAVQ 470 Query: 448 DKND--LSLNYPLPIVDHK---KACHHTLNQYYAAKKQ 480 K + + ++YP PIVDH K C + Y+ + Sbjct: 471 KKANCIIGVDYPRPIVDHSIANKECREKMGIAYSQNRS 508 >gi|17137248|ref|NP_477188.1| (6-4)-photolyase, isoform B [Drosophila melanogaster] gi|24585455|ref|NP_724274.1| (6-4)-photolyase, isoform A [Drosophila melanogaster] gi|7298691|gb|AAF53904.1| (6-4)-photolyase, isoform B [Drosophila melanogaster] gi|22946921|gb|AAN11080.1| (6-4)-photolyase, isoform A [Drosophila melanogaster] gi|201065459|gb|ACH92139.1| FI01404p [Drosophila melanogaster] Length = 540 Score = 144 bits (363), Expect = 3e-32, Method: Compositional matrix adjust. Identities = 140/515 (27%), Positives = 223/515 (43%), Gaps = 52/515 (10%) Query: 1 MKATTAMSVHLVWLRNDLRITDNKAL---YAACHNSDAK--VIAVFIATPE--QWRQHGI 53 M + + VH W R LR+ DN AL + A + + K V +FI P W Q + Sbjct: 1 MDSQRSTLVH--WFRKGLRLHDNPALSHIFTAANAAPGKYFVRPIFILDPGILDWMQ--V 56 Query: 54 SARQSHFIYASLLQVQ---KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNR 110 A + F+ +L + + L+ + V + F + RV L + Sbjct: 57 GANRWRFLQQTLEDLDNQLRKLNSRLFVVRGKPAEVFPRIFK-------SWRVEMLTFET 109 Query: 111 QYEINEVRRDKLLEKRLQHR-VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNL 169 E V RD ++K + V ++ + P ++ L + +++ L Sbjct: 110 DIEPYSVTRDAAVQKLAKAEGVRVETHCSHTIYNPELVIAKNLGKAPITYQKFLGIVEQL 169 Query: 170 -------VQADLRSLPVPAI-----RLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALH 217 V L+++P P + + + + P + FP GE AL Sbjct: 170 KVPKVLGVPEKLKNMPTPPKDEVEQKDSAAYDCPTMKQLVKRPEELGPNKFPGGETEALR 229 Query: 218 ILRKFCKEKVYYYVEQRDIPAIQG----TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIK 273 + + K++++ ++ A T+ LSPYL G LS R +LKE + K Sbjct: 230 RMEESLKDEIWVARFEKPNTAPNSLEPSTTVLSPYLKFGCLSARLFNQKLKE-IIKRQPK 288 Query: 274 PKSGAFSWLNELIWREFYRHLMAFYPSV--CMGKPFIPWTEKIEWNKDSHLLQAWKQGYT 331 S + +L+WREFY + A P+ +G + +I W + L+AW G T Sbjct: 289 HSQPPVSLIGQLMWREFYYTVAAAEPNFDRMLGNVY---CMQIPWQEHPDHLEAWTHGRT 345 Query: 332 GFPIIDAAMRQLNTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNG 390 G+P IDA MRQL GW+H+ R A FL + DL + W G+ F LLD D A N G Sbjct: 346 GYPFIDAIMRQLRQEGWIHHLARHAVACFLTRGDLWISWEEGQRVFEQLLLDQDWALNAG 405 Query: 391 GWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAP--HSWLD 448 W W +++ YFR+++P GK+ DPQG +IR ++PEL+ P I+ P S +D Sbjct: 406 NWMWLSASAFFHQ-YFRVYSPVAFGKKTDPQGHYIRKYVPELSKYPAGCIYEPWKASLVD 464 Query: 449 KND----LSLNYPLPIVDHKKACHHTLNQYYAAKK 479 + L +YP IV H+ + + AA K Sbjct: 465 QRAYGCVLGTDYPHRIVKHEVVHKENIKRMGAAYK 499 >gi|195351886|ref|XP_002042448.1| GM23319 [Drosophila sechellia] gi|194124317|gb|EDW46360.1| GM23319 [Drosophila sechellia] Length = 540 Score = 144 bits (363), Expect = 3e-32, Method: Compositional matrix adjust. Identities = 142/516 (27%), Positives = 220/516 (42%), Gaps = 54/516 (10%) Query: 1 MKATTAMSVHLVWLRNDLRITDNKAL---YAACHNSDAK--VIAVFIATPE--QWRQHGI 53 M A + VH W R LR+ DN AL + A + + K V +FI P W Q + Sbjct: 1 MDAQRSTLVH--WFRKGLRVHDNPALSHIFTAANAAPGKYFVRPIFILDPGILDWMQ--V 56 Query: 54 SARQSHFIYASLLQVQ---KSLSQKGIVFQYHQCSNFDDSIE-WLDSYCLQQRVTKLFYN 109 A + F+ +L + + L + V + F + W RV L + Sbjct: 57 GANRWRFLQQTLEDLDNQLRKLDSRLFVVRGKPAEVFPRIFKSW--------RVEMLTFE 108 Query: 110 RQYEINEVRRDKLLEKRLQHR-VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQN 168 E + RD ++K + V ++ + P ++ L + ++ Sbjct: 109 TDIEPYSLTRDAAVQKLAKAEGVKVETHCSHTIYNPELVIAKNLGKAPITYQKFLGIVDQ 168 Query: 169 L-------VQADLRSLPVPAI-----RLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNAL 216 L V L+ +P P + + + + P + FP GE AL Sbjct: 169 LKVPKVLGVPEKLKKMPTPPKDEVEQKDSAAYDCPTMEQLVKRPEELGPNKFPGGETEAL 228 Query: 217 HILRKFCKEKVYYYVEQRDIPAIQG----TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLI 272 + + K++++ ++ A T+ LSPYL G LS R +LKE + Sbjct: 229 RRMEESLKDEIWVARFEKPNTAPNSLEPSTTVLSPYLKFGCLSARLFNQKLKE-IIKRQP 287 Query: 273 KPKSGAFSWLNELIWREFYRHLMAFYPSV--CMGKPFIPWTEKIEWNKDSHLLQAWKQGY 330 K S + +L+WREFY + A P+ +G + +I W K L+AW G Sbjct: 288 KHSQPPVSLIGQLMWREFYYTVAAAEPNFDRMLGNVY---CMQIPWQKHPDHLEAWTHGR 344 Query: 331 TGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNN 389 TG+P IDA MRQL GW+H+ R A FL + DL + W G+ F LLD D A N Sbjct: 345 TGYPFIDAIMRQLRQEGWIHHLARHAVACFLTRGDLWISWEEGQRVFEQLLLDQDWALNA 404 Query: 390 GGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAP--HSWL 447 G W W +++ YFR+++P GK+ DPQG +IR ++PEL+ P I+ P S Sbjct: 405 GNWMWLSASAFFHQ-YFRVYSPVAFGKKTDPQGHYIRKYVPELSKYPAGCIYEPWKASLA 463 Query: 448 DKND----LSLNYPLPIVDHKKACHHTLNQYYAAKK 479 D+ L +YP IV H+ + + AA K Sbjct: 464 DQRAYGCVLGTDYPHRIVKHEVVHKENIKRMGAAYK 499 >gi|328857597|gb|EGG06713.1| hypothetical protein MELLADRAFT_48359 [Melampsora larici-populina 98AG31] Length = 579 Score = 144 bits (363), Expect = 3e-32, Method: Compositional matrix adjust. Identities = 149/553 (26%), Positives = 224/553 (40%), Gaps = 124/553 (22%) Query: 6 AMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQW----------------- 48 A SV + RNDLR+ DN ++ A +S V + P + Sbjct: 2 AKSVTIALFRNDLRVHDNPIIFHAHSSSQKGVDKTRVQRPSDYYLPIYVFDERMVELSGL 61 Query: 49 ---RQHGISARQS------------HFIYASLLQVQKSLSQKG--IVFQYHQCSNFDDSI 91 ++ G AR F+ S+ ++Q L Q+G +V ++ SI Sbjct: 62 PGYQREGSEARTGVCGFWRTGCHRLKFLCESVYELQHQLKQRGSDLVIRFGSIEKVTLSI 121 Query: 92 EWLDSYCLQQ---RVTKLFYNRQYEINEVRRDKLLEKRLQHRVICKS---FDDSVLLPPG 145 LQ +V ++ N++Y E+ + +++ L+ I F L+ P Sbjct: 122 ----IQALQDTDVKVDQILINKEYASEEIETEVKIDEALKSFKISVPLLFFHTRSLVHPE 177 Query: 146 SILNHALQMYKVYTPFRK--------ALIQNLVQADLRSLPVPAIRLTGP---------- 187 + + VYTPFRK L + L+ R + +P ++ P Sbjct: 178 DLPFLPSKTPDVYTPFRKHIESLPEQKLCRPLLPCPDRLIGMPPLKEIAPQRGNSGSSYD 237 Query: 188 -VTPSNIPRFFDYPF-QAID---PMFPI----------------GEQNALHILRKFC--- 223 + NI P Q D P FP GE L + + Sbjct: 238 TMKMDNILESLMKPLLQCPDLACPAFPKLSSYNFDDRSAFPYKGGESEGLRRINDYFYTG 297 Query: 224 -KEKVYYYVEQRDIPAIQG-TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSW 281 V Y + R+ Q +++ SP+L+ G LSPR+ L+E + + Sbjct: 298 NPAPVRSYKDTRNGLLGQSYSTKFSPFLAHGCLSPRKIILELREH--EKKFGANKDTYWV 355 Query: 282 LNELIWREFYRHLMAFYPSVCMG--------------------KPFIPWTEKIEWNKDSH 321 L EL+WR+++ + Y + KPF + ++ N++ Sbjct: 356 LFELLWRDYFVFITQKYGTALFKLGGFEGVLNPKAASQKIHQWKPF----QNLKMNQNQQ 411 Query: 322 LLQA-------WKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEE 374 +A W + TG P +DA M +L G+M NR R ASFL KDL VDWRIG E Sbjct: 412 GSRAINQAASRWLKAETGIPFLDANMAELRLTGFMSNRGRQNVASFLTKDLYVDWRIGAE 471 Query: 375 YFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNN 434 +F SQLLD D +SN G WQ+ A GND R FNP Q K +D +G ++R WLPEL Sbjct: 472 FFESQLLDYDPSSNYGNWQYVAGVGNDPRAS-RQFNPIKQAKDYDAKGEYVRCWLPELAK 530 Query: 435 VPTQYIHAPHSWL 447 VP + IH P WL Sbjct: 531 VPQKSIHNP--WL 541 >gi|211939158|pdb|3CVU|A Chain A, Drosophila Melanogaster (6-4) Photolyase Bound To Ds Dna With A T-T (6-4) Photolesion gi|211939161|pdb|3CVY|A Chain A, Drosophila Melanogaster (6-4) Photolyase Bound To Repaired Ds Dna gi|225697970|pdb|2WB2|A Chain A, Drosophila Melanogaster (6-4) Photolyase Bound To Double Stranded Dna Containing A T(6-4)c Photolesion gi|240104285|pdb|3CVV|A Chain A, Drosophila Melanogaster (6-4) Photolyase Bound To Ds Dna With A T-T (6-4) Photolesion And F0 Cofactor gi|289526487|pdb|2WQ6|A Chain A, Structure Of The 6-4 Photolyase Of D. Melanogaster In Complex With The Non-Natural N4-Methyl T(Dewar)c Lesion gi|289526490|pdb|2WQ7|A Chain A, Structure Of The 6-4 Photolyase Of D. Melanogaster In Complex With The Non-Natural N4-Methyl T(6-4)c Lesion Length = 543 Score = 144 bits (363), Expect = 3e-32, Method: Compositional matrix adjust. Identities = 139/515 (26%), Positives = 223/515 (43%), Gaps = 52/515 (10%) Query: 1 MKATTAMSVHLVWLRNDLRITDNKAL---YAACHNSDAK--VIAVFIATPE--QWRQHGI 53 M + + VH W R LR+ DN AL + A + + + V +FI P W Q + Sbjct: 24 MDSQRSTLVH--WFRKGLRLHDNPALSHIFTAANAAPGRYFVRPIFILDPGILDWMQ--V 79 Query: 54 SARQSHFIYASLLQVQ---KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNR 110 A + F+ +L + + L+ + V + F + RV L + Sbjct: 80 GANRWRFLQQTLEDLDNQLRKLNSRLFVVRGKPAEVFPRIFK-------SWRVEMLTFET 132 Query: 111 QYEINEVRRDKLLEKRLQHR-VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNL 169 E V RD ++K + V ++ + P ++ L + +++ L Sbjct: 133 DIEPYSVTRDAAVQKLAKAEGVRVETHCSHTIYNPELVIAKNLGKAPITYQKFLGIVEQL 192 Query: 170 -------VQADLRSLPVPAI-----RLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALH 217 V L+++P P + + + + P + FP GE AL Sbjct: 193 KVPKVLGVPEKLKNMPTPPKDEVEQKDSAAYDCPTMKQLVKRPEELGPNKFPGGETEALR 252 Query: 218 ILRKFCKEKVYYYVEQRDIPAIQG----TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIK 273 + + K++++ ++ A T+ LSPYL G LS R +LKE + K Sbjct: 253 RMEESLKDEIWVARFEKPNTAPNSLEPSTTVLSPYLKFGCLSARLFNQKLKE-IIKRQPK 311 Query: 274 PKSGAFSWLNELIWREFYRHLMAFYPSV--CMGKPFIPWTEKIEWNKDSHLLQAWKQGYT 331 S + +L+WREFY + A P+ +G + +I W + L+AW G T Sbjct: 312 HSQPPVSLIGQLMWREFYYTVAAAEPNFDRMLGNVY---CMQIPWQEHPDHLEAWTHGRT 368 Query: 332 GFPIIDAAMRQLNTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNG 390 G+P IDA MRQL GW+H+ R A FL + DL + W G+ F LLD D A N G Sbjct: 369 GYPFIDAIMRQLRQEGWIHHLARHAVACFLTRGDLWISWEEGQRVFEQLLLDQDWALNAG 428 Query: 391 GWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAP--HSWLD 448 W W +++ YFR+++P GK+ DPQG +IR ++PEL+ P I+ P S +D Sbjct: 429 NWMWLSASAFFH-QYFRVYSPVAFGKKTDPQGHYIRKYVPELSKYPAGCIYEPWKASLVD 487 Query: 449 KND----LSLNYPLPIVDHKKACHHTLNQYYAAKK 479 + L +YP IV H+ + + AA K Sbjct: 488 QRAYGCVLGTDYPHRIVKHEVVHKENIKRMGAAYK 522 >gi|329894043|ref|ZP_08270028.1| Deoxyribodipyrimidine photolyase, single-strand-specific [gamma proteobacterium IMCC3088] gi|328923215|gb|EGG30535.1| Deoxyribodipyrimidine photolyase, single-strand-specific [gamma proteobacterium IMCC3088] Length = 431 Score = 144 bits (362), Expect = 5e-32, Method: Compositional matrix adjust. Identities = 128/430 (29%), Positives = 197/430 (45%), Gaps = 34/430 (7%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQW-RQHGISARQSHFIYASLLQVQ 69 L+WL+NDLR+ DN A S+ ++ + P W G+ A+++ F+ +L ++ Sbjct: 4 LLWLQNDLRLADNAGFQLASQASELLIVYCW-PKPRPWCNLTGLGAQRTRFLSETLEHLR 62 Query: 70 KSLSQKG---IVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 LS+ G V H IE L + L +R NE K L+ Sbjct: 63 HQLSELGQDVFVSVQHPEQVLPLMIEELG-------IEHLITSRPQAYNESNSLKALQDA 115 Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADL---RSLPVPAIR 183 L V + L + + K +TPFRK + + L + LP Sbjct: 116 LDCNVSVTR--GNTLFDEDDLTFDLADLPKHFTPFRKKMEAQPIAEPLATPKQLPPKITE 173 Query: 184 LTGPVTPSNIPRFFDYPFQAIDPMFPI--GEQNALHILRK--FCKEKVYYYVEQRD-IPA 238 + TPSN R P FP GEQ AL ++ F ++ + Y + R+ + Sbjct: 174 VRYGPTPSNNTR--------PHPTFPYRGGEQEALRRIKHWVFDRQAIATYKQTRNALDG 225 Query: 239 IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFY 298 + S LSP+L+ G +SPR + + + F + + +S + + EL+WREF+ + A Sbjct: 226 LDNYSALSPWLATGAVSPRTILHHV-QRFENEVTANESTYWVFF-ELLWREFF-YWRAQI 282 Query: 299 PSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITA 358 V + P+ +K D W +G T +P+++A M QL G+M NR R I A Sbjct: 283 DGVHLFLPYGVARKKQLRTFDPRQFTRWCRGETNYPLVNALMHQLVRSGFMSNRGRQIAA 342 Query: 359 SFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRF 418 S L+ DL VDWR G +F L+D D+ASN G WQ+ A G+D R FN Q +++ Sbjct: 343 SSLIHDLGVDWRYGAAFFEKYLIDFDVASNYGNWQYIAGVGSDPRGG-RHFNIDKQTEQY 401 Query: 419 DPQGTFIRHW 428 DP+G FI W Sbjct: 402 DPKGLFITQW 411 >gi|194878837|ref|XP_001974136.1| GG21562 [Drosophila erecta] gi|190657323|gb|EDV54536.1| GG21562 [Drosophila erecta] Length = 540 Score = 143 bits (361), Expect = 5e-32, Method: Compositional matrix adjust. Identities = 99/285 (34%), Positives = 143/285 (50%), Gaps = 18/285 (6%) Query: 208 FPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQG----TSQLSPYLSIGVLSPRQCWNRL 263 FP GE AL + K++++ ++ A T+ LSPYL G LS R +L Sbjct: 220 FPGGETEALRRMEDSLKDELWVARFEKPNTAPNSLEPSTTVLSPYLKFGCLSARLFNQKL 279 Query: 264 KEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSV--CMGKPFIPWTEKIEWNKDSH 321 KE + K S + +L+WREFY + A P+ MG + +I W + + Sbjct: 280 KE-IIKRQPKHSQPPVSLIGQLMWREFYYTVAAAEPNFDRMMGNVY---CMQIPWQEHPN 335 Query: 322 LLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQL 380 L+AW G TG+P IDA MRQL GW+H+ R A FL + DL + W G+ F L Sbjct: 336 HLEAWTHGRTGYPFIDAIMRQLRQEGWIHHLARHAVACFLTRGDLWISWEEGQRVFEQLL 395 Query: 381 LDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYI 440 LD D A N G W W +++ YFR+++P GK+ DPQG +IR ++PEL+ P+ I Sbjct: 396 LDQDWALNAGNWMWLSASAFFH-QYFRVYSPVAFGKKTDPQGHYIRKYVPELSKYPSGCI 454 Query: 441 HAP--HSWLDKND----LSLNYPLPIVDHKKACHHTLNQYYAAKK 479 + P S D+ L +YP IV H+ + + AA K Sbjct: 455 YEPWKASLADQRAYGCVLGTDYPHRIVKHEVVHKENIKRMGAAYK 499 >gi|221068159|ref|ZP_03544264.1| cryptochrome, DASH family [Comamonas testosteroni KF-1] gi|220713182|gb|EED68550.1| cryptochrome, DASH family [Comamonas testosteroni KF-1] Length = 431 Score = 143 bits (361), Expect = 5e-32, Method: Compositional matrix adjust. Identities = 131/456 (28%), Positives = 194/456 (42%), Gaps = 62/456 (13%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 MS L+WLRNDLR+ D L+AAC ++ V Q R H AR A L Sbjct: 1 MSTLLLWLRNDLRLHDQPVLHAACRMGAQYILPVLCLPDIQARTHWGFARIGPHRRAWLA 60 Query: 67 QVQKSLSQKGIVFQYHQCSN----FDDSIEWLDSYCLQQRVTKLFY-------NRQYEIN 115 ++L+Q +H+ + D Q + + Q E+ Sbjct: 61 NTIQNLAQS-----FHELRSQLLILDAPAAVALPALAQALGAGIIVCEDIAAPDEQAEVQ 115 Query: 116 EVRRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLR 175 +R L + H S LL P + Q+ ++TPFR+A+ A L+ Sbjct: 116 ALRAAGLQVHTVWH---------SSLLHPDQLPWPMRQLPDIFTPFRQAV----EHAKLQ 162 Query: 176 SLPVPAIRLTGPVTPSNIPR-----------FFDYPFQAIDPMFPI-----GEQNALHIL 219 P + P P NIP F ++D I GE AL L Sbjct: 163 PYPPLPVLEALPRVPPNIPSKYRQEQVLALDAFANASNSLDARSAIALLQGGESAALAHL 222 Query: 220 RKFCKEKV--YYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSG 277 R++ + Y + + + +S+ S +L+ G LSPRQ + L++ F +S Sbjct: 223 RQYLARGLPHSYKRTRNGLVGLDYSSKWSLWLATGALSPRQAYAELRQ-FEATRGATESS 281 Query: 278 AFSWLNELIWREFYR-----HLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTG 332 + W EL+WR+++R H A Y + +G ++ D AW G TG Sbjct: 282 YWLWF-ELLWRDYFRFLHMQHGRALYRARGLGP-------ELATPHDDQNFAAWCSGQTG 333 Query: 333 FPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGW 392 ++DAAMR+L G++ NRLR + AS+L+ DL DWR G +F SQLLD D+ SN G W Sbjct: 334 QTLVDAAMRELAATGYLGNRLRQVAASYLIHDLGCDWRAGAAWFESQLLDYDVYSNQGNW 393 Query: 393 QWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHW 428 + A G D R F+P Q +D G + R W Sbjct: 394 LYIAGRGTDPQG-GRRFDPVKQAATYDADGAYQRLW 428 >gi|301622212|ref|XP_002940429.1| PREDICTED: cryptochrome-1-like [Xenopus (Silurana) tropicalis] Length = 531 Score = 143 bits (361), Expect = 5e-32, Method: Compositional matrix adjust. Identities = 139/514 (27%), Positives = 219/514 (42%), Gaps = 76/514 (14%) Query: 8 SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67 S+H W R LR+ DN AL AA + A++ +FI P R +S + F+ +L Sbjct: 5 SIH--WFRKGLRLHDNPALLAAMKDC-AELYPIFILDPWFPRNMKVSVNRWRFLIEALKD 61 Query: 68 VQKSLSQ-KGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK- 125 + ++L + +F E + +VT+L + E +RD +EK Sbjct: 62 LDENLKKINSRLFVVR-----GKPTEVFPLLFKKWKVTRLTFEVDTEPYSRQRDADVEKL 116 Query: 126 RLQHRV-ICKSFDDSVLLPPGSILNHALQMYKVYTPFRKAL---------IQNLVQADLR 175 +H V + + +++ I + + Y F+ L +Q Q +++ Sbjct: 117 AAEHNVQVIQKVSNTLYAIDRIIAENNGKPPLTYVRFQTVLALLGPPKRPVQVPTQENMK 176 Query: 176 SL------------PVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFC 223 VP + G + PR ++P GE AL L Sbjct: 177 DCCTLWKSSYNEKYGVPTLEELGQDSLKLGPR-----------LYPGGESEALSRLELHM 225 Query: 224 KEKV----YYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAF 279 K + E T+ LSPY+ G LS R W R+ + + K Sbjct: 226 KRTTWVCNFKKPETEPNSLTPSTTVLSPYVKFGCLSARTFWWRIADIYQGK--KHSDPPV 283 Query: 280 SWLNELIWREFYRHLMAFYP--------SVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYT 331 S +L+WREF+ P +VC+ +++W + LQAW +G T Sbjct: 284 SLHGQLLWREFFYTAGVGIPNFNKMEGNTVCV---------QVDWGNNKEHLQAWSEGRT 334 Query: 332 GFPIIDAAMRQLNTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNG 390 G+P IDA M QL T GW+H+ R A FL + DL + W G++ F LLD D + N G Sbjct: 335 GYPFIDAIMTQLRTEGWIHHLARHAVACFLTRGDLWISWEEGQKVFEELLLDADWSLNAG 394 Query: 391 GWQW-AASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIH----APHS 445 WQW +AST +FR+++P GK+ D G +I+ +LP L P +YI+ AP S Sbjct: 395 NWQWLSASTFFHQ--FFRVYSPVAFGKKTDKNGDYIKKYLPILKKFPAEYIYEPWKAPRS 452 Query: 446 WLDKND--LSLNYPLPIVDHKKACHHTLNQYYAA 477 ++ + +YP PIV+H A + + AA Sbjct: 453 LQERAGCIIGKDYPKPIVEHDVASKQNIQRMKAA 486 >gi|19528415|gb|AAL90322.1| RE11660p [Drosophila melanogaster] Length = 540 Score = 143 bits (361), Expect = 6e-32, Method: Compositional matrix adjust. Identities = 98/285 (34%), Positives = 143/285 (50%), Gaps = 18/285 (6%) Query: 208 FPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQG----TSQLSPYLSIGVLSPRQCWNRL 263 FP GE AL + + K++++ ++ A T+ LSPYL G LS R +L Sbjct: 220 FPGGETEALRRMEESLKDEIWVARFEKPNTAPNSLEPSTTVLSPYLKFGCLSARLFNQKL 279 Query: 264 KEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSV--CMGKPFIPWTEKIEWNKDSH 321 KE + K S + +L+WREFY + A P+ +G + +I W + Sbjct: 280 KE-IIKRQPKHSQPPVSLIGQLMWREFYYTVAAAEPNFDRMLGNVY---CMQIPWQEHPD 335 Query: 322 LLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQL 380 L+AW G TG+P IDA MRQL GW+H+ R A FL + DL + W G+ F L Sbjct: 336 HLEAWTHGRTGYPFIDAIMRQLRQEGWIHHLARHAVACFLTRGDLWISWEEGQRVFEQLL 395 Query: 381 LDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYI 440 LD D A N G W W +++ YFR+++P GK+ DPQG +IR ++PEL+ P I Sbjct: 396 LDQDWALNAGNWMWLSASAFFHQ-YFRVYSPVAFGKKTDPQGHYIRKYVPELSKYPAGCI 454 Query: 441 HAP--HSWLDKND----LSLNYPLPIVDHKKACHHTLNQYYAAKK 479 + P S +D+ L +YP IV H+ + + AA K Sbjct: 455 YEPWKASLVDQRAYGCVLGTDYPHRIVKHEVVHKENIKRMGAAYK 499 >gi|255324708|ref|ZP_05365822.1| deoxyribodipyrimidine photolyase [Corynebacterium tuberculostearicum SK141] gi|255298183|gb|EET77486.1| deoxyribodipyrimidine photolyase [Corynebacterium tuberculostearicum SK141] Length = 158 Score = 143 bits (361), Expect = 6e-32, Method: Composition-based stats. Identities = 60/114 (52%), Positives = 79/114 (69%) Query: 323 LQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLD 382 L+ W+ G TG P++DA MR+L G+MHNR+RM+ SFL K+L + WR+GEE+F L+D Sbjct: 25 LKDWQAGTTGIPLVDAGMRELWATGYMHNRVRMVVGSFLTKNLGIHWRLGEEWFWDTLVD 84 Query: 383 GDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVP 436 D ASN WQW A G+D+ P+FRIFNP Q KRFDP G ++R W P L+ P Sbjct: 85 ADAASNPFNWQWVAGCGDDAAPFFRIFNPETQAKRFDPDGEYVRRWAPALSAPP 138 >gi|158293404|ref|XP_314748.3| AGAP008651-PA [Anopheles gambiae str. PEST] gi|157016689|gb|EAA10141.3| AGAP008651-PA [Anopheles gambiae str. PEST] Length = 556 Score = 143 bits (361), Expect = 6e-32, Method: Compositional matrix adjust. Identities = 135/506 (26%), Positives = 220/506 (43%), Gaps = 52/506 (10%) Query: 13 WLRNDLRITDNKALYAACHNSDAK-----VIAVFIATPEQWRQHGISARQSHFIYASLLQ 67 W R LRI DN AL A A + +F+ P + + + F+ +L Sbjct: 10 WFRKGLRIHDNPALTVAVDKVRANPAKYCLRPIFVLDPGIRKWLRVGPNRWRFLQQTLAN 69 Query: 68 VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127 + ++L + I + + + +E V+ L Y E V+RD +E++ Sbjct: 70 LDENL--RSINSRLYVVRG--NPVEVFPKLFADWNVSLLTYEHDIEPYAVKRDSTVEEQA 125 Query: 128 QHRVICKSFDDS--VLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185 + + + S + P G + + + Y R A + + + + LPVP Sbjct: 126 RKHWVEVHIEKSHTIFDPEGIVKKNGGKPPLTYQ--RYATLASACKIP-QPLPVPQKLPA 182 Query: 186 GPVTPS------NIPRFFDYP-FQAID--------PMFPIGEQNALHILRKFCKEKVYYY 230 +P P +D P + +D FP GE AL + + K + Sbjct: 183 KETSPEADKEERKNPSCYDPPTMEELDIEEASMGQCKFPGGESEALRRMNEILSRKAW-- 240 Query: 231 VEQRDIPAIQ------GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNE 284 V + + P T+ LSPYL G LS R ++R+ E K S + + Sbjct: 241 VCKFEKPNTSPNSLEPSTTVLSPYLKFGCLSVRLFYSRIAETIKGQ--KHSQPPVSLIGQ 298 Query: 285 LIWREFYRHLMAFYPSV--CMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQ 342 ++WREFY + A P+ +G +I+W+ + L+AW G TG+P IDA MRQ Sbjct: 299 VMWREFYYCVAAATPNYDKMVGNGIC---TQIDWDTNKDYLEAWTHGRTGYPFIDAIMRQ 355 Query: 343 LNTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGND 401 L GW+H+ R A FL + DL + W G+ F LLD D A N G W W +++ Sbjct: 356 LRQEGWIHHLARHAVACFLTRGDLWISWEEGQRVFEELLLDADWALNAGNWMWLSASAFF 415 Query: 402 SVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAP-HSWLDKND-----LSLN 455 YFR+++P GK+ DP+G FI+ ++PEL P I+ P + L+ + + Sbjct: 416 HQ-YFRVYSPVAFGKKTDPEGKFIKKYVPELARFPAGIIYEPWKANLETQKKLGCIIGKD 474 Query: 456 YPLPIVDHKKACHHTLNQYYAAKKQS 481 YP+ IV H+ + + AA K++ Sbjct: 475 YPMRIVVHEDISKVNIQRMSAAYKRN 500 >gi|3986298|dbj|BAA35000.1| blue light photoreceptor [Drosophila melanogaster] Length = 542 Score = 143 bits (360), Expect = 6e-32, Method: Compositional matrix adjust. Identities = 130/478 (27%), Positives = 214/478 (44%), Gaps = 52/478 (10%) Query: 8 SVHLVWLRNDLRITDNKALYAACHNSDAKV--IAVFIATPEQWRQHGISARQSHFIYASL 65 +++W R+ LR+ DN AL AA + D + I VFI E + + F+ SL Sbjct: 5 GANVIWFRHGLRLHDNPALLAALADKDQGIALIPVFIFDGESAGTKNVGYNRMRFLLDSL 64 Query: 66 L----QVQKSLSQKG--IVFQYHQCSNFDDSIEW--LDSYCLQQRVTKLFYNRQYEINEV 117 Q+Q + +G +VF+ F E L C++Q ++ R I + Sbjct: 65 QDIDDQLQAATDGRGRLLVFEGEPAYIFRRLHEQVRLHRICIEQDCEPIWNERDESIRSL 124 Query: 118 RRDKLLEKRLQHRVICKSFDDSVLLPP-GSILNHALQMYK-----VYTPFRKALIQNLVQ 171 R+ L +V +D +++ G I QM+ + P R L Sbjct: 125 CRE--LNIDFVEKVSHTLWDPQLVIETNGGIPPLTYQMFLHTVQIIGLPPRPTADARLED 182 Query: 172 ADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPI----GEQNALHILRKFCKEKV 227 A L R P F+ + + I GE ALH+L + K + Sbjct: 183 ATFVELDPEFCRSLKLFEQLPTPEHFNVYGDNMGFLAKINWRGGETQALHLLDERLKVEQ 242 Query: 228 Y-----YYVEQRDIPAIQGTSQ-LSPYLSIGVLSPRQCWNRLKEEFVDLLIKP------K 275 + +Y+ + +P I + + +S +L G LS R+ + + + F ++ ++ Sbjct: 243 HAFERGFYLPNQALPNIHDSPKSMSAHLRFGCLSVRRFYWSVHDLFKNVQLRACVRGVQM 302 Query: 276 SGAFSWLNELIWREFYRHLMAFYPS--------VCMGKPFIPWTEKIEWNKDSHLLQAWK 327 +G +LIWRE++ + P+ +C+ IPW + N+D LLQ+W+ Sbjct: 303 TGGAHITGQLIWREYFYTMSVNNPNYDRMEGNEICLS---IPWAKP---NED--LLQSWR 354 Query: 328 QGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLA 386 G TGFP+ID AMRQL GW+H+ LR A+FL + L W G ++F+ LLD D + Sbjct: 355 LGQTGFPLIDGAMRQLLAEGWLHHTLRNTVATFLTRGGLWQSWEHGLQHFLKYLLDADWS 414 Query: 387 SNNGGWQWAASTGNDSVPYFRIFN-PTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAP 443 G W W +S+ + + + P KR DP GT+I+ ++PEL NVP +++H P Sbjct: 415 VCAGNWMWVSSSAFERLLDSSLVTCPVALAKRLDPDGTYIKQYVPELMNVPKEFVHEP 472 >gi|302761504|ref|XP_002964174.1| hypothetical protein SELMODRAFT_142524 [Selaginella moellendorffii] gi|300167903|gb|EFJ34507.1| hypothetical protein SELMODRAFT_142524 [Selaginella moellendorffii] Length = 539 Score = 143 bits (360), Expect = 7e-32, Method: Compositional matrix adjust. Identities = 119/423 (28%), Positives = 198/423 (46%), Gaps = 29/423 (6%) Query: 64 SLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLL 123 SL+Q+ SL + G + + D+ L +++FYN Y+ + RD + Sbjct: 9 SLIQLSSSLERLGAPLLVKRVAGTLDA---LLQIAHDTGASQVFYNHLYDPVSLIRDHRV 65 Query: 124 EKRL-QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPF-RKALIQNLVQADLRSLPVPA 181 ++ L H + +F +L P I + Q + + F K+L +A L P Sbjct: 66 KQGLADHGISVTTFRGDLLYEPWEIYDDQGQAFTTFQAFWSKSLSMRDPEAPLLP-PRQL 124 Query: 182 IRLTGPVTPS------NIPRFFDYPFQAI-----DPMFPIGEQNALHILRKFCKEKVYYY 230 + L G + S + + A+ P + G++ L + Y Sbjct: 125 LSLPGYLCQSCSIDQLGLENEAEKSSNALLARSWTPGWCAGDKAFTDFL---SGPILQYS 181 Query: 231 VEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLK-EEFVDLLIKPKSGAFSWLNELIWRE 289 + ++ I ++ TSQLSP+L G +S R+ + ++ ++F +L L RE Sbjct: 182 IRRKQIDSVT-TSQLSPHLHFGEISIRKIFYSIRMQQFRSKEAVDFESMNMFLRALGLRE 240 Query: 290 FYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWM 349 + R+L +P + + + W D ++W+QG TG+P++DA MRQL GW+ Sbjct: 241 YSRYLSFNFP-FTHKRSLLANLKHFPWRADEGYFKSWRQGRTGYPLVDAGMRQLWATGWL 299 Query: 350 HNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIF 409 H ++R++ +SFLVK L V W G +YF LLD D+ ++ GWQ+ + D R Sbjct: 300 HCKIRVVVSSFLVKFLQVPWTWGMKYFWETLLDADVENDVLGWQYISGGLPDGHELDRWE 359 Query: 410 NPTIQGKRFDPQGTFIRHWLPELNNVPTQYIH----APHSWLDKNDLSL--NYPLPIVDH 463 NP +G + DP+G ++R WLPEL+ VP +IH AP + L + L NYP PIV+ Sbjct: 360 NPQEEGYKLDPKGEYVRKWLPELSRVPIDWIHHPWDAPSTILRAAGVELGSNYPRPIVEV 419 Query: 464 KKA 466 A Sbjct: 420 AAA 422 >gi|312883173|ref|ZP_07742904.1| deoxyribodipyrimidine photolyase [Vibrio caribbenthicus ATCC BAA-2122] gi|309369333|gb|EFP96854.1| deoxyribodipyrimidine photolyase [Vibrio caribbenthicus ATCC BAA-2122] Length = 487 Score = 143 bits (360), Expect = 7e-32, Method: Compositional matrix adjust. Identities = 138/505 (27%), Positives = 226/505 (44%), Gaps = 72/505 (14%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 ++L+WL+ DLR+TD++ALYAA + +I ++ P S R F+Y SL+ + Sbjct: 4 INLLWLKRDLRLTDHEALYAATQSGRPTLI-FYLFEPFLLDNPHYSERHWRFVYQSLVDM 62 Query: 69 QKSLS--QKGI------VFQYHQ--CSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVR 118 + L + I +F + + CS +D +E L SY Q+ K+ +NR E+ + Sbjct: 63 NRRLEPLNRSITIATTDIFHFLEAVCSTYD--VEMLYSY--QEIGLKVTFNRDLEVAQYC 118 Query: 119 RDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRS-- 176 + QH + + F P G+++ A K + K + L L+ Sbjct: 119 K--------QHTIAWQEF------PTGAVIRGARSRDKWDKNWAKTMRSPLATVHLKKEH 164 Query: 177 -LPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRD 235 LP L+ P +IP + Q M G A L F + + Y + Sbjct: 165 LLPYSEKTLS---LPCHIPNAWRSKTQG---MQTGGSDLAWKTLDDFFERRGKNYYKSLS 218 Query: 236 IPAI--QGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRH 293 P + + S+LSPYL+ G +S R+ + R+ E + + A S + L W + H Sbjct: 219 SPTLSRKACSRLSPYLAWGNISLREVYQRVLEHWNTKGFRRSLTALS--SRLHW---HCH 273 Query: 294 LMAFYPSVC---------MGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLN 344 + + S C +P + + E++K LQAWK G TG P++DA MR L+ Sbjct: 274 FIQKFESECDMEFRCLNRAYEPLLSSSSSTEFDK----LQAWKSGQTGVPLVDACMRCLH 329 Query: 345 TIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVP 404 G+++ R+R + SFL + DWR G E+ S LD + + +Q A G + Sbjct: 330 HTGYINFRMRAMLVSFLTHHMGFDWRYGVEHLASLFLDFEPGIHYAQFQMQA--GVTGIN 387 Query: 405 YFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSW---------LDKNDLSLN 455 RI+NP Q + DP G FI W+PEL +P +++P LD + LN Sbjct: 388 TIRIYNPIKQAQEHDPDGQFILRWVPELKGIPIPLLYSPSQITPMEAVLYDLDSESVYLN 447 Query: 456 YPLPIVDHKKACHHTLNQYYAAKKQ 480 PI+D + A ++ + KK+ Sbjct: 448 ---PIIDIEHAGRLARDRLWTWKKR 469 >gi|126695730|ref|YP_001090616.1| putative deoxyribodipyrimidine photolyase [Prochlorococcus marinus str. MIT 9301] gi|126542773|gb|ABO17015.1| putative deoxyribodipyrimidine photolyase [Prochlorococcus marinus str. MIT 9301] Length = 498 Score = 142 bits (359), Expect = 8e-32, Method: Compositional matrix adjust. Identities = 126/468 (26%), Positives = 212/468 (45%), Gaps = 47/468 (10%) Query: 8 SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67 ++++W + DLRI DN+AL A ++D ++ ++I + W Q+ S RQ F SL+ Sbjct: 3 GINILWFKKDLRIFDNEALCEAIKDND--ILPIYIIELDIWNQNTHSDRQWQFCKESLID 60 Query: 68 VQKSLSQKG--IVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYE---INEVRRDKL 122 ++ +L++ G ++ + N D I + K Y+ Q + R K+ Sbjct: 61 LRNALAEIGQPLIIRTGNVINIFDEIS-------SKFKIKGLYSHQETGDWLTYKRDQKV 113 Query: 123 LEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAI 182 E L +I K F S+ L ++K +NL++A LR + +I Sbjct: 114 REWALSKNIIWKEF------LQFSVFRGNLDRNNWSKKWQKNSEKNLLKAPLR---INSI 164 Query: 183 RLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIP--AIQ 240 L PS+ + F + + G + L ++ F K+ Y + P + Sbjct: 165 NLNIGEIPSD--KIFSFKKETCPGRMQGGRKKGLERMQYFFSNKLDSYSKDISSPEKSFD 222 Query: 241 GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPS 300 ++LSPY+ G +S LKE F I + + + L W + + P Sbjct: 223 SCTRLSPYICWGCIS-------LKEIFKRANISKNNNSRMLKSRLTWHCHFIQKLESEPE 275 Query: 301 VCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASF 360 + + + P+ + I K++ LL +W G TGFP IDA MR LN GW++ R+R + SF Sbjct: 276 LEF-REYHPFFKNIR-EKNNELLYSWSSGNTGFPFIDACMRSLNFNGWINFRMRAMLMSF 333 Query: 361 LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGW-QWAASTGNDSVPYFRIFNPTIQGKRFD 419 +L + W+ ++ +D + + W Q +G S+ RI+NP QGK D Sbjct: 334 ASYNLWLPWQDSGSELANKFVDYEPGIH---WNQCQMQSGTTSINTNRIYNPIKQGKDHD 390 Query: 420 PQGTFIRHWLPELNNVPTQYIHAPHSWL-----DKNDLSLNYPLPIVD 462 PQG FI+ W+PEL ++ +IH P WL + +NY PI+D Sbjct: 391 PQGKFIKKWIPELKDISLNFIHEP--WLLSIFNQEEYEKINYIRPIID 436 >gi|195580452|ref|XP_002080051.1| GD21692 [Drosophila simulans] gi|194192060|gb|EDX05636.1| GD21692 [Drosophila simulans] Length = 540 Score = 142 bits (359), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 98/285 (34%), Positives = 142/285 (49%), Gaps = 18/285 (6%) Query: 208 FPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQG----TSQLSPYLSIGVLSPRQCWNRL 263 FP GE AL + + K++++ ++ A T+ LSPYL G LS R +L Sbjct: 220 FPGGETEALRRMEESLKDEIWVARFEKPNTAPNSLEPSTTVLSPYLKFGCLSARLFNQKL 279 Query: 264 KEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSV--CMGKPFIPWTEKIEWNKDSH 321 KE + K S + +L+WREFY + A P+ +G + +I W + Sbjct: 280 KE-IIKRQPKHSQPPVSLIGQLMWREFYYTVAAAEPNFDRMLGNVY---CMQIPWQEHPD 335 Query: 322 LLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQL 380 L+AW G TG+P IDA MRQL GW+H+ R A FL + DL + W G+ F L Sbjct: 336 HLEAWTHGRTGYPFIDAIMRQLRQEGWIHHLARHAVACFLTRGDLWISWEEGQRVFEQLL 395 Query: 381 LDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYI 440 LD D A N G W W +++ YFR+++P GK+ DPQG +IR ++PEL+ P I Sbjct: 396 LDQDWALNAGNWMWLSASAFFH-QYFRVYSPVAFGKKTDPQGHYIRKYVPELSKYPAGCI 454 Query: 441 HAP--HSWLDKND----LSLNYPLPIVDHKKACHHTLNQYYAAKK 479 + P S D+ L +YP IV H+ + + AA K Sbjct: 455 YEPWKASLADQRAYGCVLGTDYPHRIVKHEVVHKENIKRMGAAYK 499 >gi|302844305|ref|XP_002953693.1| hypothetical protein VOLCADRAFT_121192 [Volvox carteri f. nagariensis] gi|300261102|gb|EFJ45317.1| hypothetical protein VOLCADRAFT_121192 [Volvox carteri f. nagariensis] Length = 1025 Score = 142 bits (358), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 89/279 (31%), Positives = 138/279 (49%), Gaps = 37/279 (13%) Query: 208 FPIGEQNALHILRKFCKEK---VYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLK 264 F GE AL LR + + Y+ + + +++ +P+L+ G +SPR+ ++ ++ Sbjct: 265 FKGGETAALARLRYYLWDSDLIASYFDTRNGMLGGDYSTKFAPWLAAGCISPRKIYHEIR 324 Query: 265 EEFVDLLIKPKSGAFSWLNELIWREFYRHLM------AFYPSVCMGKPFIPWTEKIEWNK 318 + + + + + ELIWR+++R F+ + G P + WN Sbjct: 325 K--YEAQRQSNKSTYWVIFELIWRDYFRFFALKHGNRIFFETGTSGLPLV-------WNP 375 Query: 319 DSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMS 378 D+ L W+ G TG P++DA MR+L G+M NR R AS+LV DL +DWR G +YF S Sbjct: 376 DADLWHRWRDGRTGLPLVDANMRELAATGFMSNRGRQNLASYLVLDLGIDWRRGADYFES 435 Query: 379 QLLDGDLASNNGGWQWAASTGNDSVPYFRI---------FNPTIQGKRFDPQGTFIRHWL 429 QLLD D+ SN G W AA + +F I F K +DPQG ++R W Sbjct: 436 QLLDYDVTSNWGNWVAAAGLAGGRINHFNIAKQASDVGAFRIGGGSKDYDPQGDYVRTWC 495 Query: 430 PELNNVPTQYIHAPHSWLDKND--------LSLNYPLPI 460 PEL +VP +H P WL + + ++YP PI Sbjct: 496 PELRHVPVGKVHEP--WLMSKEEQEKAGCRIGVDYPNPI 532 Score = 142 bits (357), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 89/279 (31%), Positives = 137/279 (49%), Gaps = 37/279 (13%) Query: 208 FPIGEQNALHILRKFCKEK---VYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLK 264 F GE AL LR + + Y+ + + +++ +P+L+ G +SPR+ ++ ++ Sbjct: 709 FKGGETAALARLRYYLWDSDLIASYFDTRNGMLGGDYSTKFAPWLAAGCISPRKIYHEIR 768 Query: 265 EEFVDLLIKPKSGAFSWLNELIWREFYRHLM------AFYPSVCMGKPFIPWTEKIEWNK 318 + + + + + ELIWR+++R F+ + G P + WN Sbjct: 769 K--YEAQRQSNKSTYWVIFELIWRDYFRFFALKHGNRIFFETGTSGLPLV-------WNP 819 Query: 319 DSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMS 378 D L W+ G TG P++DA MR+L G+M NR R AS+LV DL +DWR G +YF S Sbjct: 820 DPDLWHRWRDGRTGLPLVDANMRELAATGFMSNRGRQNVASYLVLDLGIDWRRGADYFES 879 Query: 379 QLLDGDLASNNGGWQWAASTGNDSVPYFRI---------FNPTIQGKRFDPQGTFIRHWL 429 QLLD D+ SN G W AA + +F I F K +DPQG ++R W Sbjct: 880 QLLDYDVTSNWGNWVAAAGLAGGRINHFNIAKQASDVGAFRIGGGSKDYDPQGDYVRTWC 939 Query: 430 PELNNVPTQYIHAPHSWLDKND--------LSLNYPLPI 460 PEL +VP +H P WL + + ++YP PI Sbjct: 940 PELRHVPVGKVHEP--WLMSKEEQEKAGCRIGVDYPNPI 976 >gi|312378885|gb|EFR25332.1| hypothetical protein AND_09443 [Anopheles darlingi] Length = 558 Score = 142 bits (358), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 128/507 (25%), Positives = 212/507 (41%), Gaps = 54/507 (10%) Query: 13 WLRNDLRITDNKALYAACHN-----SDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67 W R LRI DN AL A + + +F+ P + + + F+ +L+ Sbjct: 10 WFRKGLRIHDNPALSLAVDKVRQNPTKYCLRPIFVLDPAIRKWLRVGPNRWRFLQQTLVN 69 Query: 68 VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127 + ++L + + E D + V+ L Y E V+RDK +E Sbjct: 70 LDENLRTINSRLYVVRGNPVQIFPELFDRW----NVSLLTYEHDIEPYAVQRDKTVEGHA 125 Query: 128 -QHRVICKSFDDSVLLPPGSILNHALQ----MYKVYTPFRKALIQNLVQADLRSLPVPAI 182 +H V + P +I+ Y+ Y A L + LP + Sbjct: 126 REHNVTTHVEVSHTIFHPETIVKRNGGKPPLTYQKYVSLASACTIPLPLPAPQKLPGKGV 185 Query: 183 RLTGPVTPSNIPRFFDYPF---------QAIDPMFPIGEQNALHILRKFCKEKVYYYVEQ 233 +D P ++ FP GE AL + + K + + Sbjct: 186 EPEKDSQERKDQSCYDPPTMNELDIDEGSLLECKFPGGETEALSRMEQCLSRKAWICSFE 245 Query: 234 RDIPAIQG----TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWRE 289 + + T+ LSPYL G LS R ++R++E K S + +++WRE Sbjct: 246 KPNTSPNSLEPSTTVLSPYLKFGCLSARLFYSRIQETIKGQ--KHSQPPVSLIGQMMWRE 303 Query: 290 FYRHLMAFYPS--------VCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMR 341 FY + A P+ VC+ +++W+ + L AW +G TG+P IDA MR Sbjct: 304 FYYCVAAVTPNFDKMSGNDVCI---------QVDWDTNKEYLNAWTEGRTGYPFIDAIMR 354 Query: 342 QLNTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGN 400 QL GW+H+ R A FL + DL + W G+ F LLD D A N G W W +++ Sbjct: 355 QLRQEGWIHHLARHAVACFLTRGDLWISWEEGQRVFEELLLDADWALNAGNWMWLSASAF 414 Query: 401 DSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAP-HSWLDKND-----LSL 454 YFR+++P GK+ DP+G +I+ ++PEL P+ I+ P + L+ + Sbjct: 415 FHQ-YFRVYSPVAFGKKTDPEGKYIKKYVPELARFPSGIIYEPWKANLETQKKLGCIIGK 473 Query: 455 NYPLPIVDHKKACHHTLNQYYAAKKQS 481 +YP IV H++ + + AA +++ Sbjct: 474 DYPKRIVVHEEISKTNIQRMSAAYRRN 500 >gi|327271582|ref|XP_003220566.1| PREDICTED: cryptochrome-1-like [Anolis carolinensis] Length = 438 Score = 142 bits (357), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 96/279 (34%), Positives = 141/279 (50%), Gaps = 28/279 (10%) Query: 211 GEQNALHILRKFCKEK--VYYYVEQRDIPA--IQGTSQLSPYLSIGVLSPRQCWNRLKEE 266 GE L L + K + + + + R IP + T+ LSPY S+G LS R + RL + Sbjct: 120 GETTGLQRLEEHMKNQGWIAKFTKPRTIPNSLLPSTTGLSPYFSLGCLSVRMFFYRLSK- 178 Query: 267 FVDLLIKPKSGAF---SWLNELIWREFYRHLMAFYPSVC--MGKPFIPWTEKIEWNKDSH 321 + + K+ + S +L+WREF+ + + P+ +G P +IEW +D+ Sbjct: 179 ---IYAQSKNHSLPPVSLQGQLLWREFFYTVASATPNFTKMVGNPIC---LQIEWYEDAE 232 Query: 322 LLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQL 380 L WK TGFP IDA M QL GW+H+ R A FL + DL + W G + F L Sbjct: 233 KLHKWKTAQTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWISWEEGMKVFEELL 292 Query: 381 LDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYI 440 LD D + N G W W +++ Y RIF P GKR DP+G +IR +LP L N P++YI Sbjct: 293 LDSDYSINAGNWMWLSASAFFHQ-YSRIFCPVRFGKRTDPEGHYIRKYLPVLKNFPSKYI 351 Query: 441 HAPHSWLDKND--------LSLNYPLPIVDHKKACHHTL 471 + P W + + YP P+V+HK+ + L Sbjct: 352 YEP--WTAPAEAQREAGCIIGKEYPFPMVNHKEVSDNNL 388 >gi|126727582|ref|ZP_01743415.1| Deoxyribodipyrimidine photolyase [Rhodobacterales bacterium HTCC2150] gi|126703172|gb|EBA02272.1| Deoxyribodipyrimidine photolyase [Rhodobacterales bacterium HTCC2150] Length = 511 Score = 142 bits (357), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 122/492 (24%), Positives = 208/492 (42%), Gaps = 49/492 (9%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 +VW + DLR+ D+ L AA H ++ +I ++I PE W+Q ++ R HF + L+ + K Sbjct: 7 IVWFKRDLRVQDHAPLLAASH-TNRPIIPLYIIEPECWQQPDVARRHWHFTHDCLVDLNK 65 Query: 71 SLSQKG------IVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLE 124 L+ G + + +D + ++ Y+R + Sbjct: 66 DLTDLGQPLIIAVGVAVDVIAQLQKKFGAVDLFAHEETGNAWTYDRDVAVAG-------- 117 Query: 125 KRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSL-PVPAIR 183 +C + P + + L+ V++ R + + + L P P Sbjct: 118 -------LCSDLEIPFHEYPSNGVVRRLKSRDVWSRIRNERMADRISPKPTKLVPFPKC- 169 Query: 184 LTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNA----LHILRKFCKEKVYYYVEQRDIPAI 239 + P+ P + P F A+ G ++A L + E+ Y++ D + Sbjct: 170 ASAPLPPKHDPIFG----AALTGNVQKGGRDAAVADLQSFLTYRAERYLYHISAPDASEM 225 Query: 240 QGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKS----GAFSWLNELIWREFYRHLM 295 S+LS +L++G LS R+ + + L K ++ + + WR + + Sbjct: 226 Y-CSRLSAHLALGSLSVREVVQSIAKRRAQLSPMEKKTFGRNLTAFGSRVAWRCHFVQKI 284 Query: 296 AFYPSV--CMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRL 353 PS+ C P + E N D++ QAW G TG+P IDA MR L + GW+ R+ Sbjct: 285 EDQPSIETCCMHPAFEGIREDEHN-DAYF-QAWAAGQTGYPFIDACMRNLVSEGWITFRM 342 Query: 354 RMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTI 413 R + SF L +DWRI ++ D + + Q +G + R++NP Sbjct: 343 RAMLVSFASYHLWLDWRITGKHLARVFTDYEPGIHYS--QLQMQSGVTGINTMRVYNPIK 400 Query: 414 QGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSW----LDKNDLSL--NYPLPIVDHKKAC 467 Q + DP G FIR W+PEL VP ++IH P W LD + L +YP PI+DH+ A Sbjct: 401 QSQEHDPTGKFIRKWVPELRAVPNEFIHEPWKWKGTLLDDVEFELGRDYPEPILDHEVAA 460 Query: 468 HHTLNQYYAAKK 479 + +K Sbjct: 461 RQAKKRISDVRK 472 >gi|195107460|ref|XP_001998330.1| GI23904 [Drosophila mojavensis] gi|193914924|gb|EDW13791.1| GI23904 [Drosophila mojavensis] Length = 539 Score = 142 bits (357), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 131/507 (25%), Positives = 223/507 (43%), Gaps = 66/507 (13%) Query: 8 SVHLVWLRNDLRITDNKALYAACHNSDAKV--IAVFIATPEQWRQHGISARQSHFIYASL 65 +++W R+ LR+ DN A+ AA N D V I +FI E + + F+ SL Sbjct: 5 GANVIWFRHGLRLHDNPAMLAALSNKDQGVALIPIFIFDGESAGTKNVGYNRMRFLLDSL 64 Query: 66 LQVQKSLSQK-----GIVFQYHQCSNFDDSIE---WLDSYCLQQRVTKLFYNRQYEINEV 117 + + L + G++ Q + + L C++Q ++ R + + Sbjct: 65 QDIDRQLQEATEGRGGLLICEGQPVHIFRRLHEHVGLHKICVEQDCEPIWNERDEAVKSL 124 Query: 118 RRDKLLE--KRLQHRVICKSFD-DSVLLPPGSILNHALQMYK-----VYTPFRKALIQNL 169 R+ +E +++ H + +D +V+ G I QM+ + P R N Sbjct: 125 CRELGIEYVEKVSHTL----WDPRTVIDTNGGIAPLTYQMFLHTVQIIGLPPRPVRDPNF 180 Query: 170 VQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPI----GEQNALHILRKFCKE 225 L G + P F+ + + I GE AL +L + K Sbjct: 181 EGVKFVQLSPELRHDIGCFEMTPTPEHFNVYSDNMGYLAKINWVGGETQALLLLGERLKV 240 Query: 226 KVY-----YYVEQRDIPAIQGTSQ-LSPYLSIGVLSPRQCWNRLKEEFVDLLIKP----- 274 + + YY+ + +P I T + +S +L G LS R+ + + + F ++ ++ Sbjct: 241 EQHAFERGYYLPNQAMPNILDTPKSMSAHLRFGCLSVRRFYWCMHDLFKNVQLRACVRGV 300 Query: 275 -KSGAFSWLNELIWREFYRHLMAFYP--------SVCMGKPFIPWTEKIEWNKDSHLLQA 325 SG +LIWRE++ + P +C+ IPW + D+ LQ Sbjct: 301 QMSGGAHITGQLIWREYFYTMSVNNPQYDRMEGNEICLS---IPWAKP-----DAEQLQR 352 Query: 326 WKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGD 384 W+ G TGFP+ID+AMRQL GW+H+ LR A+FL + L +W G ++F+ LLD D Sbjct: 353 WRLGQTGFPLIDSAMRQLLAEGWLHHTLRNTVATFLTRGGLWQNWEFGLQHFLKYLLDAD 412 Query: 385 LASNNGGWQWAASTGNDSVPYFRIFN-PTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAP 443 + G W W +S+ + + + P KR DP G +I+ ++PEL +VP +YIH P Sbjct: 413 WSVCAGNWMWVSSSAFERLLDSSLVTCPVALAKRLDPNGQYIKQYVPELQHVPKEYIHEP 472 Query: 444 HSWLDKND--------LSLNYPLPIVD 462 WL + + ++YP I+D Sbjct: 473 --WLMSAEEQKRYECLIGVHYPDRIID 497 >gi|163840005|ref|YP_001624410.1| deoxyribodipyrimidine photolyase [Renibacterium salmoninarum ATCC 33209] gi|162953481|gb|ABY22996.1| deoxyribodipyrimidine photolyase [Renibacterium salmoninarum ATCC 33209] Length = 147 Score = 141 bits (356), Expect = 2e-31, Method: Composition-based stats. Identities = 69/138 (50%), Positives = 90/138 (65%), Gaps = 5/138 (3%) Query: 340 MRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTG 399 MRQL GWMHNR+RM+ ASFLVK+LL+DWR GE++F L+D DLASN WQW A +G Sbjct: 1 MRQLWQTGWMHNRVRMVVASFLVKNLLIDWREGEKWFWDTLVDADLASNPANWQWVAGSG 60 Query: 400 NDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDK---NDLSLNY 456 D+ PYFR+FNP Q K+FD G ++R ++PEL + ++ IH P W K +D L Y Sbjct: 61 ADAAPYFRVFNPVTQSKKFDSDGDYLRKFVPELAALGSKEIHEP--WKIKPTLDDKPLEY 118 Query: 457 PLPIVDHKKACHHTLNQY 474 P P+VD + L Y Sbjct: 119 PDPLVDLGVSRERALEAY 136 >gi|77964006|gb|ABB13344.1| cryptochrome 1b [Hordeum vulgare subsp. vulgare] Length = 462 Score = 141 bits (356), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 91/238 (38%), Positives = 133/238 (55%), Gaps = 17/238 (7%) Query: 242 TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFS-------WLNELIWREFYRHL 294 TS LSPYL G LS R+ ++ ++ + L+ G + +L + RE+ R+L Sbjct: 2 TSLLSPYLHFGELSVRKVFHLVR---MKQLVWSNEGNHAAEESCTLFLRSVGLREYSRYL 58 Query: 295 MAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLR 354 +P KP + W D + W+QG TG+P++DA MR+L GW+H+R+R Sbjct: 59 CFNHP-CSHEKPLLAHLRFFPWVVDESTFKFWRQGRTGYPLVDAGMRELWATGWLHDRIR 117 Query: 355 MITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQ 414 ++ +SF VK L + WR G +YF LLD DL S+ GWQ+ + + DS I NP ++ Sbjct: 118 VVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGSLPDSRELDHIDNPQLE 177 Query: 415 GKRFDPQGTFIRHWLPELNNVPTQYIH----APHSWLDKNDLSL--NYPLPIVDHKKA 466 G +FDP G ++R WLPEL +PT++IH AP S L + L NYPLPIV+ A Sbjct: 178 GYKFDPHGEYVRRWLPELARLPTEWIHHPWDAPASVLQAAGVELGSNYPLPIVELDTA 235 >gi|86131286|ref|ZP_01049885.1| cryptochrome, DASH family [Dokdonia donghaensis MED134] gi|85818697|gb|EAQ39857.1| cryptochrome, DASH family [Dokdonia donghaensis MED134] Length = 432 Score = 141 bits (356), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 118/446 (26%), Positives = 206/446 (46%), Gaps = 38/446 (8%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSH-----FI 61 M LVW RN+LR+ DN +L AA + +V+ V+ P + + +++ F+ Sbjct: 1 MDTALVWFRNNLRVQDNASLTAAIA-TGKRVVGVYYFDPRHYEEGDFGFKKTEKYRAKFL 59 Query: 62 YASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDK 121 ++ ++ +L ++ I + E + S +VT L +++ EV+ Sbjct: 60 IETIENLKANLDKRNITLLVYNLK----PEEHITSVVKSYKVTSLHSQKEWTAEEVKVTN 115 Query: 122 LLEK---RLQHRVICKSFDDSVLLPPGSI-LNHALQMYKVYTPFRKALIQNLVQADLRSL 177 +E+ + H ++ F L P I N ++ K++T FRK + ++D+R + Sbjct: 116 AVERAIPEVSHELVYDQF----LFHPDDIPFNTITEVPKIFTQFRKKCEK---ESDVRPI 168 Query: 178 -----PVPAIRLTGPVTP-SNIPRF-FDYPFQAIDPMFP--IGEQNALHILRKF--CKEK 226 +P + VTP S + D + FP GE A L + +K Sbjct: 169 FKELTALPQENILTTVTPISTLEDLGLDTFVKDHRTAFPWEGGEDAAWARLNDYFWTTQK 228 Query: 227 VYYYVEQRDIPAIQG-TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNEL 285 + YY + R+ +G +S+LS +L+ G +S RQ + ++K + +K + + EL Sbjct: 229 LAYYKKTRNGLIGEGYSSKLSAWLANGSISARQIYWKVKR--FEKEVKKNQDTYWLIFEL 286 Query: 286 IWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNT 345 IWR++++++ + I ++ +W ++ + W G T + ++A M +L Sbjct: 287 IWRDYFKYVSLKHGDNIFKIGGIL-NKEYDWKHNNKAQREWINGNTKYDFVNANMIELKE 345 Query: 346 IGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPY 405 GWM NR R ASF K+ DWR+G YF S L+D D+ SN G W + A GND P Sbjct: 346 TGWMSNRGRQNVASFWAKEQEQDWRVGAAYFESILIDYDVHSNWGNWMYNAGVGND--PR 403 Query: 406 FRIFNPTIQGKRFDPQGTFIRHWLPE 431 R FN Q +D G ++R W E Sbjct: 404 DRKFNIKRQQDMYDGSGKYVRLWTQE 429 >gi|195055524|ref|XP_001994667.1| GH17366 [Drosophila grimshawi] gi|193892430|gb|EDV91296.1| GH17366 [Drosophila grimshawi] Length = 539 Score = 141 bits (356), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 133/509 (26%), Positives = 221/509 (43%), Gaps = 64/509 (12%) Query: 5 TAMSVHLVWLRNDLRITDNKALYAACHNSDAKV--IAVFIATPEQWRQHGISARQSHFIY 62 T +++W R+ LR+ DN AL +A + D + I +FI E + + F+ Sbjct: 2 TLRGANVIWFRHGLRLHDNPALLSALADKDYGIALIPIFIFDGESAGTKSVGYNRMRFLL 61 Query: 63 ASLLQVQKSL-----SQKGIVFQYHQCSN----FDDSIEWLDSYCLQQRVTKLFYNRQYE 113 SL + K L Q G++ Q ++ D + L C++ ++ R Sbjct: 62 DSLDDIDKQLKEVSDGQGGLLICEGQPTDIFRRLHDQVR-LHKICVELDCEPIWNERDEA 120 Query: 114 INEVRRDKLLEKRLQHRVICKSFDD--SVLLPPGSILNHALQMYK-----VYTPFRKALI 166 IN + R+ +E ++ + D +V+ G I QM+ + P R Sbjct: 121 INNLCRELGIEYV---EMVSHTLWDPRTVIDTNGGIAPLTYQMFLHTVHIIGLPPRPVHD 177 Query: 167 QNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPI----GEQNALHILRKF 222 L R G + + P F+ + + I GE AL +L + Sbjct: 178 PQFDGVGFVQLSAEMRREIGCLEKTPSPEHFNVYSDNMGTLAKINWVGGESQALLLLGER 237 Query: 223 CK------EKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKP-- 274 K E+ YY Q + +S +L G LS R+ + + + F ++ ++ Sbjct: 238 LKVEQHAFERGYYLPNQALPNIVDKPKSMSAHLRFGCLSVRRFYWNVHDLFKNVQLRACI 297 Query: 275 -----KSGAFSWLNELIWREFYRHLMAFYP--------SVCMGKPFIPWTEKIEWNKDSH 321 SGA +LIWRE++ + P +C+ IPW + N+D Sbjct: 298 RGVQMTSGAHI-TGQLIWREYFYTMSVNNPQYDRMEGNEICLN---IPWAKP---NEDH- 349 Query: 322 LLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQL 380 LQ W+ G TGFP+IDAAMRQL GW+H+ LR A+FL + L +W G ++F+ L Sbjct: 350 -LQRWRLGQTGFPLIDAAMRQLLAEGWLHHTLRNTVATFLTRGGLWQNWEFGLQHFLKYL 408 Query: 381 LDGDLASNNGGWQWAASTGNDS-VPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQY 439 LD D + G W W +S+ + + ++ P KRFDP G +I+ ++PEL NV ++ Sbjct: 409 LDADWSVCAGNWMWVSSSAFERLLDTSQVSCPVALAKRFDPNGVYIKQYVPELRNVTKEF 468 Query: 440 IHAP------HSWLDKNDLSLNYPLPIVD 462 IH P + + + ++YP I+D Sbjct: 469 IHEPWRMTAEQQEIAECLIGVHYPERIID 497 >gi|159487721|ref|XP_001701871.1| cryptochrome DASH1 [Chlamydomonas reinhardtii] gi|158281090|gb|EDP06846.1| cryptochrome DASH1 [Chlamydomonas reinhardtii] Length = 469 Score = 141 bits (356), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 136/498 (27%), Positives = 216/498 (43%), Gaps = 70/498 (14%) Query: 3 ATTAMSVHLV-WLRNDLRITDNKALYAACH----NSDAKVIAVFIATPE-----QWRQHG 52 AT LV W RNDLR+ DN ++ A ++V+ V++ P W Sbjct: 2 ATAGGGQRLVLWFRNDLRLHDNYIVHEAAQRVKRGEASEVLPVYVYDPRFFAATPWGALK 61 Query: 53 ISARQSHFIYASLLQVQKSLSQKG--IVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNR 110 A ++ FI + +++ L G +V Q L + L Sbjct: 62 TGAHRAKFIQECVADLRQRLQGLGSDLVVAVGQPEQL------LPALLEGGGAAPLVLTA 115 Query: 111 QYEINEVRRDKLLEKRLQHRVICKSFDDSVLLPPGSILNH--ALQMYKVYTPFRKALIQN 168 + EV ++ R I K +L G + H L + V+TPF++ + + Sbjct: 116 E----EVTSEEAAVDVAVARAI-KPAGGKLLRYWGHTMYHYDDLDLPDVFTPFKEKVEK- 169 Query: 169 LVQADLRSLPVPAIRLTGPVTPSNIPRFFD---------YPFQAIDPMFPIGEQNALHIL 219 +A L P P + T + ++ +P +D F GE AL L Sbjct: 170 --RAALPLPPAPRLGATAAAALAAPLPGWEQLPPAPPVTHPKAVLD--FKGGETAALARL 225 Query: 220 RKFCKEK---VYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKS 276 + + + Y+ + + +++ +P+L+ G +SPR+ ++ +++ + KS Sbjct: 226 KYYLWDSDLLSTYFDTRNGMLGGDYSTKFAPWLAQGCISPRKIFHEIRK-YESQRFSNKS 284 Query: 277 GAFSWLNELIWREFYRHLM------AFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGY 330 + + ELIWR+F+R F+ + G P + WN D L W++G Sbjct: 285 -TYWVIFELIWRDFFRFFALKHGNRIFFETGTSGLPLV-------WNPDPELWARWREGR 336 Query: 331 TGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNG 390 TG P++DA MR+L G+M NR R AS+LV DL VDWR G +YF LLD D+ SN G Sbjct: 337 TGLPLVDANMRELAATGFMSNRGRQNVASYLVLDLGVDWRRGADYFEEVLLDYDVTSNWG 396 Query: 391 GWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKN 450 W AA V +F I Q K +DP G +++ W PEL NVP +H P WL Sbjct: 397 NWVAAAGLTGGRVNHFNIAK---QSKDYDPTGEYVKTWCPELKNVPVTKVHEP--WLMSK 451 Query: 451 D--------LSLNYPLPI 460 + + ++YP PI Sbjct: 452 EEQERSGCRIGVDYPNPI 469 >gi|194759941|ref|XP_001962202.1| GF14557 [Drosophila ananassae] gi|190615899|gb|EDV31423.1| GF14557 [Drosophila ananassae] Length = 539 Score = 141 bits (355), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 146/533 (27%), Positives = 222/533 (41%), Gaps = 88/533 (16%) Query: 1 MKATTAMSVHLVWLRNDLRITDNKAL---YAACHNSDAK--VIAVFIATPE--QWRQHGI 53 M A A VH W R LR+ DN AL + + + K V +FI P W Q + Sbjct: 1 MDAKHATLVH--WFRKGLRVHDNPALSQIFKVANTAPGKYFVRPIFILDPGILDWMQ--V 56 Query: 54 SARQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYE 113 A + F+ +L + + L + G + + S+ RV L + E Sbjct: 57 GANRWRFLQQTLHDLDQQLQKLGSRLFVVRGKPAEVFPRIFKSW----RVELLTFETDIE 112 Query: 114 INEVRRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQAD 173 + RD ++K + KS D V + H + +Y P + ++ + Sbjct: 113 PYSLARDSAVQK------LAKS--DGV-----KVETHC--SHTIYNP------ELVIAKN 151 Query: 174 LRSLPVPAIRLTGPVTPSNIPRFFDYPF-------------------------------- 201 L P+ + G V +P D P Sbjct: 152 LGKAPITYQKFLGIVEKLKLPTVLDLPEKLKEKVQPPKDDIEEKDSEAYDCPTMEQLVKR 211 Query: 202 -QAIDPM-FPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQG----TSQLSPYLSIGVLS 255 + + P+ FP GE AL + + K++++ ++ A T+ LSPYL G LS Sbjct: 212 PEDLGPLKFPGGETEALRRMEESLKDELWVARFEKPNTAPNSLEPSTTVLSPYLKFGCLS 271 Query: 256 PRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSV--CMGKPFIPWTEK 313 R RLKE + K S + +++WREFY + A P+ +G + + Sbjct: 272 SRLFHQRLKE-ILKRQTKHSQPPVSLIGQMMWREFYYTVAAAEPNFDRMLGNVYC---LQ 327 Query: 314 IEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK-DLLVDWRIG 372 I W + L+AW G TG+P IDA MRQL GW+H+ R A FL + DL + W G Sbjct: 328 IPWEEHPDHLKAWTYGQTGYPFIDAIMRQLRQEGWIHHLARHAVACFLTRGDLWISWEEG 387 Query: 373 EEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPEL 432 + F LLD D A N G W W +++ YFR+++P GK+ DPQG +IR ++PEL Sbjct: 388 QRVFEQLLLDQDWALNAGNWMWLSASAFFH-QYFRVYSPVAFGKKTDPQGNYIRKYVPEL 446 Query: 433 NNVPTQYIHAP--HSWLDKND----LSLNYPLPIVDHKKACHHTLNQYYAAKK 479 P I+ P S D+ L +YP IV H+ + + AA K Sbjct: 447 AKYPAGCIYEPWKASLSDQRAYGCVLGTDYPHRIVKHEVVHKENIKRMGAAYK 499 >gi|195433475|ref|XP_002064736.1| GK15094 [Drosophila willistoni] gi|194160821|gb|EDW75722.1| GK15094 [Drosophila willistoni] Length = 546 Score = 141 bits (355), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 147/505 (29%), Positives = 215/505 (42%), Gaps = 61/505 (12%) Query: 1 MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAK-----VIAVFIATPE--QWRQHGI 53 M+A T ++ + W R LR+ DN AL + A V +FI P W Q + Sbjct: 1 MEAKTKATL-IHWFRKGLRVHDNPALMQIFTTAQAAPKKFYVRPIFILDPGILDWMQ--V 57 Query: 54 SARQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYE 113 A + F+ +L + K L Q + IE V L + E Sbjct: 58 GANRWRFLQQTLDDLDKQLRQLNSRLYVVR----GKPIEVFPRLFKSWNVELLTFESDIE 113 Query: 114 INEVRRDKLLEKRLQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQA 172 RD ++K + I ++ + P ++ L + AL++ L A Sbjct: 114 PYAQTRDAAVQKIAKAAGIKVETHCSHTIYNPELVIAKNLGKAPITYQKFLALVEKLKLA 173 Query: 173 DLRSLPVPAIRLTGPVT---PSNIPRFFDYPFQA--------IDP-MFPIGEQNALHILR 220 + P LT P + +D P Q + P +FP GE L + Sbjct: 174 KVLDKPEKLDALTQPSRDELEQENDKVYDCPSQEQLVKKPNELGPNIFPGGETEGLRRME 233 Query: 221 KFCKEKVYYYVEQRDIPAIQG----TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIK-PK 275 ++++ ++ A T+ LSPYL G LS R + RLKE +L K PK Sbjct: 234 DSLNDELWVARFEKPNTAPNSLEPSTTVLSPYLKFGCLSSRLFYQRLKE----ILAKHPK 289 Query: 276 SGA--FSWLNELIWREFYRHLMAFYPSV--CMGKPF---IPWTEKIEWNKDSHLLQAWKQ 328 S + +++WREFY + A P+ +G + IPW E E L+AW Sbjct: 290 HSQPPVSLVGQVLWREFYYTVAAAEPNFDRMLGNVYCLQIPWQEHPE------HLEAWTY 343 Query: 329 GYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLAS 387 G TG+P IDA MRQL GW+H+ R A FL + DL + W G+ F LLD D A Sbjct: 344 GRTGYPFIDAIMRQLRQEGWIHHLARHAVACFLTRGDLWISWEEGQRVFEQLLLDQDWAL 403 Query: 388 NNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWL 447 N G W W +++ YFR+++P GK+ DPQG +IR + PEL N P + I+ P WL Sbjct: 404 NAGNWMWLSASAFFH-QYFRVYSPVAFGKKTDPQGNYIRKYCPELANYPNKQIYEP--WL 460 Query: 448 DKND--------LSLNYPLPIVDHK 464 L +YP IV H+ Sbjct: 461 ATLQAQREYGCVLGEDYPHRIVKHE 485 >gi|123967930|ref|YP_001008788.1| putative deoxyribodipyrimidine photolyase [Prochlorococcus marinus str. AS9601] gi|123198040|gb|ABM69681.1| putative deoxyribodipyrimidine photolyase [Prochlorococcus marinus str. AS9601] Length = 498 Score = 141 bits (355), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 127/468 (27%), Positives = 213/468 (45%), Gaps = 49/468 (10%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 ++++W + DLRI DN+AL A ++D ++ ++I + W Q+ S RQ F SL+ + Sbjct: 4 INILWFKKDLRIFDNEALCEAIKDND--ILPIYIIELDIWSQNTHSDRQWQFCKESLIDL 61 Query: 69 QKSLSQKG--IVFQYHQCSNFDDSI----EWLDSYCLQQRVTKLFYNRQYEINEVRRDKL 122 + +L++ G ++ + N D+I + Y Q+ L Y R ++ E K Sbjct: 62 RNALAEIGQPLIIRTGNVINIFDAISSKFKIKGIYSHQETGDWLTYKRDQKVKEWAFSK- 120 Query: 123 LEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAI 182 +I K F S+ L ++K +NL++A LR + +I Sbjct: 121 -------NIIWKEF------LQFSVFRGNLDRNNWSKKWQKNSEKNLLKAPLR---INSI 164 Query: 183 RLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIP--AIQ 240 PS+ F + + G + L ++ F K+ Y + P + Sbjct: 165 NFNTGEIPSD--EIFSFKKETCPGRMQGGRKKGLERMQYFFSNKLDSYSKDISSPEKSFD 222 Query: 241 GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPS 300 ++LSPY+ G +S LKE F I + + + L W + + P Sbjct: 223 SCTRLSPYICWGCIS-------LKEIFQKANISKNNNSRMLKSRLTWHCHFIQKLESEPE 275 Query: 301 VCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASF 360 + + + P+ + I K++ LL +W G TGFP IDA MR LN GW++ R+R + SF Sbjct: 276 LEF-REYHPFFKNIR-EKNNELLYSWSSGNTGFPFIDACMRSLNFHGWINFRMRAMLMSF 333 Query: 361 LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGW-QWAASTGNDSVPYFRIFNPTIQGKRFD 419 +L + W+ ++ +D + + W Q +G S+ RI+NP QGK D Sbjct: 334 ASYNLWLPWQDSGSELANKFVDYEPGIH---WNQCQMQSGTTSINTNRIYNPIKQGKDHD 390 Query: 420 PQGTFIRHWLPELNNVPTQYIHAPHSWL----DKNDLS-LNYPLPIVD 462 PQG FI+ WLPEL ++ +IH P WL +K + +NY PI+D Sbjct: 391 PQGKFIKKWLPELKDLSLNFIHEP--WLLSRFNKEEYEQINYIRPIID 436 >gi|297721439|ref|NP_001173082.1| Os02g0625000 [Oryza sativa Japonica Group] gi|255671101|dbj|BAH91811.1| Os02g0625000 [Oryza sativa Japonica Group] Length = 334 Score = 140 bits (354), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 67/150 (44%), Positives = 96/150 (64%), Gaps = 6/150 (4%) Query: 319 DSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMS 378 D ++W+QG TG+P++DA MR+L GW HNR+R+I +SF VK LL+ W G +YF Sbjct: 25 DEERFKSWRQGMTGYPLVDAGMRELWATGWTHNRIRVIISSFAVKFLLIPWTWGMKYFWD 84 Query: 379 QLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQ 438 LLD DL S+ GWQ+ + + D R+ NP +QG+++DP G ++R W+PEL +PT+ Sbjct: 85 VLLDADLESDILGWQYISGSLPDGHELSRLDNPEVQGQKYDPDGVYVRTWIPELARMPTE 144 Query: 439 YIH----APHSWLDKN--DLSLNYPLPIVD 462 +IH AP L+ +L NYP PIVD Sbjct: 145 WIHHPWDAPSCILEVAGVELGFNYPKPIVD 174 >gi|77963986|gb|ABB13334.1| cryptochrome 2 [Hordeum vulgare subsp. vulgare] gi|77963988|gb|ABB13335.1| cryptochrome 2 [Hordeum vulgare subsp. vulgare] Length = 350 Score = 140 bits (354), Expect = 4e-31, Method: Compositional matrix adjust. Identities = 66/153 (43%), Positives = 97/153 (63%), Gaps = 6/153 (3%) Query: 316 WNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEY 375 W D ++W+QG TG+P++DA MR+L GW HNR+R+I +SF VK LL+ W G +Y Sbjct: 15 WRADEDRFKSWRQGMTGYPLVDAGMRELWATGWTHNRIRVIVSSFAVKFLLIPWTWGMKY 74 Query: 376 FMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNV 435 F LLD D+ S+ GWQ+ + D R+ NP +QG+++DP G ++R W+PEL + Sbjct: 75 FWDVLLDADIESDILGWQYISGCLPDGHELGRLDNPEVQGQKYDPDGEYVRTWIPELARM 134 Query: 436 PTQYIH----APHSWLD--KNDLSLNYPLPIVD 462 P ++IH AP S L+ +L NYP+PIV+ Sbjct: 135 PGEWIHHPWDAPSSILEVAGVELGFNYPMPIVE 167 >gi|302791750|ref|XP_002977641.1| hypothetical protein SELMODRAFT_417535 [Selaginella moellendorffii] gi|300154344|gb|EFJ20979.1| hypothetical protein SELMODRAFT_417535 [Selaginella moellendorffii] Length = 433 Score = 140 bits (354), Expect = 4e-31, Method: Compositional matrix adjust. Identities = 134/447 (29%), Positives = 198/447 (44%), Gaps = 50/447 (11%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIA-----TPEQWRQHGISAR----QSHFI 61 L+W R LR+ DN +L AACH S V VF+ P+ SAR + F+ Sbjct: 3 LLWFRKGLRLHDNPSLEAACHGS-RNVYPVFVLDPWFLAPDPSAPSPGSARVGINRIQFL 61 Query: 62 YASLLQVQKSLSQKGI-VFQYHQCSNFDDSIEW-LDSYCLQQRVTKLFYNRQYEINEVRR 119 SL + ++LS +G + H + I+W + C + +R +I E + Sbjct: 62 LESLQDLDRNLSSRGSKLLLVH-----GNPIQWRIRKLCFEFDTEPYALDRDAKIKEHAK 116 Query: 120 DKLLEKRLQHRVICKSFDDSVLLP------PGSILNHALQMYKVYTPFRKALIQNLVQAD 173 DK +E L V F+ +L+ P + + + P D Sbjct: 117 DKGIE--LHCSVSHTIFNPDLLIAKNGGKAPLTFQSFCKNLVPATKPIGNGPSSIPPTGD 174 Query: 174 LRSL---PVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILR-KFCKEK-VY 228 L + PVP + G + D+ + P F GE L L EK V Sbjct: 175 LHGIKVVPVPTLEELG---------YTDF-HEDFSP-FRGGETVGLTRLEDSLANEKWVC 223 Query: 229 YYVEQRDIPAI---QGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNEL 285 + + + P T+ LSPYL G LS R ++R+KE + S S +L Sbjct: 224 EFEKPKGDPTAFIKPATTVLSPYLKFGCLSSRLFYSRVKEVY-SRAKSFTSPPVSLEAQL 282 Query: 286 IWREFYRHLMAFYPSVCMGKPFI-PWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLN 344 +WREF+ A Y + K P ++I W D LL AW+ G TG+P IDAAM QL Sbjct: 283 LWREFF--YTAAYATANFDKMVGNPTCKQIPWKDDDELLSAWRDGRTGYPWIDAAMTQLR 340 Query: 345 TIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSV 403 GWMH+ R A FL + D+ V W G + F L+D D + NNG W W +++ + Sbjct: 341 KWGWMHHLARHAVACFLTRGDMFVYWEKGRDVFDRLLIDADWSINNGNWLWLSASAFFNQ 400 Query: 404 PYFRIFNPTIQGKRFDPQGTFIRHWLP 430 Y RI++P K++D QG +I+H+LP Sbjct: 401 -YHRIYSPITFAKKYDRQGNYIKHFLP 426 >gi|77963990|gb|ABB13336.1| cryptochrome 2 [Hordeum vulgare subsp. vulgare] Length = 350 Score = 140 bits (354), Expect = 4e-31, Method: Compositional matrix adjust. Identities = 66/153 (43%), Positives = 97/153 (63%), Gaps = 6/153 (3%) Query: 316 WNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEY 375 W D ++W+QG TG+P++DA MR+L GW HNR+R+I +SF VK LL+ W G +Y Sbjct: 15 WRADEDRFKSWRQGMTGYPLVDAGMRELWATGWTHNRIRVIVSSFAVKFLLIPWTWGMKY 74 Query: 376 FMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNV 435 F LLD D+ S+ GWQ+ + D R+ NP +QG+++DP G ++R W+PEL + Sbjct: 75 FWDVLLDADIESDILGWQYISGCLPDGHELGRLDNPEVQGQKYDPDGEYVRTWIPELARM 134 Query: 436 PTQYIH----APHSWLD--KNDLSLNYPLPIVD 462 P ++IH AP S L+ +L NYP+PIV+ Sbjct: 135 PGEWIHHPWDAPSSILEVAGVELGFNYPMPIVE 167 >gi|115738187|ref|XP_785873.2| PREDICTED: similar to Cry1-A protein [Strongylocentrotus purpuratus] gi|115977051|ref|XP_001194752.1| PREDICTED: similar to Cry1-A protein [Strongylocentrotus purpuratus] Length = 516 Score = 140 bits (353), Expect = 4e-31, Method: Compositional matrix adjust. Identities = 101/301 (33%), Positives = 143/301 (47%), Gaps = 27/301 (8%) Query: 192 NIPRFFDYPFQAID---PMFPIGEQNALHILRKFCKEKVYY--YVEQRDIPA--IQGTSQ 244 IP + F D PM+ GE A L + + K + + R PA + + Sbjct: 206 GIPTLEELGFDPEDVPPPMWIGGETEAKQRLDRHLERKAWVANFERPRMSPASLMASPAG 265 Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304 LSPYL G LSPR + +L E + + K + S +L+WREF F+ C Sbjct: 266 LSPYLRFGCLSPRTFYWKLTELYQKVR-KTTNTPLSLHGQLLWREF------FFTVACNN 318 Query: 305 KPFI-----PWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITAS 359 + F P +I W+K++ LL W G TG+P IDA M QL GW+H R A Sbjct: 319 RQFDHMVDNPICIQIPWDKNTALLNKWANGETGYPWIDAIMTQLRLEGWIHPLARHAVAC 378 Query: 360 FLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRF 418 FL + DL + W G + F LLD D + N G W W S + +F + P G+R Sbjct: 379 FLTRGDLWISWEEGMKVFDEYLLDADWSVNAGNWIW-LSCSSFYQQFFHCYCPVKFGRRT 437 Query: 419 DPQGTFIRHWLPELNNVPTQYIHAPHSW------LDKNDLSLNYPLPIVDHKKACHHTLN 472 DP G ++R +LP L N P++YI P + K + +YPLPIVDH +A H + Sbjct: 438 DPNGDYVRKYLPFLKNFPSKYIFEPWTAPIEVQEKAKCIIGKDYPLPIVDHAEASHRNIE 497 Query: 473 Q 473 + Sbjct: 498 R 498 >gi|195569723|ref|XP_002102858.1| GD19278 [Drosophila simulans] gi|194198785|gb|EDX12361.1| GD19278 [Drosophila simulans] Length = 542 Score = 140 bits (353), Expect = 4e-31, Method: Compositional matrix adjust. Identities = 130/478 (27%), Positives = 213/478 (44%), Gaps = 52/478 (10%) Query: 8 SVHLVWLRNDLRITDNKALYAACHNSDAKV--IAVFIATPEQWRQHGISARQSHFIYASL 65 +++W R+ LR+ DN AL AA + D + I VFI E + + F+ SL Sbjct: 5 GANVIWFRHGLRLHDNPALLAALADKDQGIALIPVFIFDGESAGTKNVGYNRMRFLLDSL 64 Query: 66 L----QVQKSLSQKG--IVFQYHQCSNFDDSIEW--LDSYCLQQRVTKLFYNRQYEINEV 117 Q+Q + +G +VF+ F E L C++Q ++ R I + Sbjct: 65 QDIDDQLQAATDGRGRLLVFEGEPAYIFRRLHEQVRLHRICIEQDCEPIWNERDENIRSL 124 Query: 118 RRDKLLEKRLQHRVICKSFDDSVLLPP-GSILNHALQMYK-----VYTPFRKALIQNLVQ 171 R+ L +V +D +++ G I QM+ + P R L Sbjct: 125 CRE--LSIDFVEKVSHTLWDPQLVIETNGGIPPLTYQMFLHTVQIIGLPPRPTADARLDD 182 Query: 172 ADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPI----GEQNALHILRKFCKEKV 227 A L R +P F+ + + I GE AL +L + K + Sbjct: 183 ATFVELEPEFCRSLKLFEQLPMPEHFNVYGDNMGFLAKINWRGGETQALLLLDERLKVEQ 242 Query: 228 Y-----YYVEQRDIPAIQGTSQ-LSPYLSIGVLSPRQCWNRLKEEFVDLLIKP------K 275 + +Y+ + +P I + + +S +L G LS R+ + + + F ++ ++ Sbjct: 243 HAFERGFYLPNQALPNIHDSPKSMSAHLRFGCLSVRRFYWSVHDLFKNVQLRACVRGVQM 302 Query: 276 SGAFSWLNELIWREFYRHLMAFYPS--------VCMGKPFIPWTEKIEWNKDSHLLQAWK 327 +G +LIWRE++ + P+ +C+ IPW + N+D LLQ W+ Sbjct: 303 TGGAHITGQLIWREYFYTMSVNNPNYDRMEGNEICLS---IPWAKP---NED--LLQRWR 354 Query: 328 QGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLA 386 G TGFP+ID AMRQL GW+H+ LR A+FL + L W G ++F+ LLD D + Sbjct: 355 LGQTGFPLIDGAMRQLLAEGWLHHTLRNTVATFLTRGGLWQSWEHGLQHFLKYLLDADWS 414 Query: 387 SNNGGWQWAASTGNDSVPYFRIFN-PTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAP 443 G W W +S+ + + + P KR DP GT+I+ ++PEL NVP +Y+H P Sbjct: 415 VCAGNWMWVSSSAFERLLDSSLVTCPVALAKRLDPDGTYIKQYVPELMNVPKEYVHEP 472 >gi|116072905|ref|ZP_01470170.1| Deoxyribodipyrimidine photolyase [Synechococcus sp. BL107] gi|116064431|gb|EAU70192.1| Deoxyribodipyrimidine photolyase [Synechococcus sp. BL107] Length = 496 Score = 140 bits (353), Expect = 4e-31, Method: Compositional matrix adjust. Identities = 131/485 (27%), Positives = 212/485 (43%), Gaps = 51/485 (10%) Query: 8 SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67 ++ +VW + DLR D++ L+ A + V+ +++ PE W+Q S+RQ F SL+ Sbjct: 3 ALQIVWFKRDLRTVDHRPLFEA--SKCGPVLPLYVVEPELWQQPDSSSRQWLFCRESLID 60 Query: 68 VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEIN-EVRRDKLLEK- 125 +Q++L++ G + D + L+ Q + L+ + + + +RDK + Sbjct: 61 LQRALAEFGQPLVVRR----GDVADVLERARRQFGIDALWSHEETGNDWTYQRDKRVAAW 116 Query: 126 RLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185 QH + P + L+ + + + + L +LP RL Sbjct: 117 AKQHGIPWTEI-------PQFGVTRRLKSRNGWAKRWETQMAEPITQPLTALP----RLA 165 Query: 186 GPVTPSNIPRFFDYPFQAIDPMFPI------GEQNALHILRKFCKEKVYYYVEQRDIP-- 237 + P IP D P ++ P P G + R F ++V Y P Sbjct: 166 D-LDPGAIP---DLPHGSMAPD-PCPHRQLGGRRQGELEFRDFLNQRVERYCSSISSPNK 220 Query: 238 AIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAF 297 A G S+LS YL+ G LS ++E G S+ + L W + + Sbjct: 221 AFTGCSRLSAYLTWGCLS-------MREVLQQSRTMQGRGVNSFGSRLHWHCHFIQKLED 273 Query: 298 YPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMIT 357 PS+ + F P I + HL QAW +G TG P +DA MR L GW++ R+R + Sbjct: 274 EPSIEF-QDFHPLMRGIRDSNQDHL-QAWAEGRTGVPFVDACMRALRAHGWINFRMRAML 331 Query: 358 ASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGW-QWAASTGNDSVPYFRIFNPTIQGK 416 SF +L + WR + Q +D + + W Q +G+ S+ RI+NP QG+ Sbjct: 332 MSFASYNLWLPWRQSGLHLARQFVDYEPGIH---WSQCQMQSGSTSINTIRIYNPIKQGR 388 Query: 417 RFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYA 476 DP+G FIRHW PEL VP YIH P W +L P PIVD + ++ +A Sbjct: 389 DHDPEGRFIRHWCPELREVPAIYIHEP--W----ELGGGMPAPIVDVTTSMQAAKDRIWA 442 Query: 477 AKKQS 481 ++ + Sbjct: 443 VRRSA 447 >gi|298708156|emb|CBJ30497.1| cryptochrome 1 [Ectocarpus siliculosus] Length = 542 Score = 140 bits (353), Expect = 5e-31, Method: Compositional matrix adjust. Identities = 152/523 (29%), Positives = 229/523 (43%), Gaps = 81/523 (15%) Query: 8 SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFI-----ATPEQWRQHGISARQSHFIY 62 S+H W R LR+ DN+AL AC N A + +F+ A+PE ++ F+ Sbjct: 9 SIH--WFRKGLRLHDNRALLEAC-NGTASLYPLFVLDSDPASPES----RAGPLRTAFLL 61 Query: 63 ASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKL 122 SL + + L KG + E L + V KL + E RD+ Sbjct: 62 ESLQDLDEQLRAKGSRLFVVRGK----PEEVLPQLFEEWNVKKLTFEADSEPRSRARDRE 117 Query: 123 LEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLR----SLP 178 + + K VL+ S L + LQ Y + ++ A L+ + P Sbjct: 118 VGS------LAKEAGVQVLIRGTSTLRN-LQNYHMLMGKKQGTYLKTYGAFLKLHDNAGP 170 Query: 179 VP--AIRLTGPV-----TPSN-------IPRFFDYPFQAIDPM-----FPIGEQNALHIL 219 VP A ++G + +P + IP D ++P+ F GE+ AL L Sbjct: 171 VPDCAPDISGDLPAPGASPDDAEYDRFSIPSLSDL---GVEPLAKALKFRGGEREALARL 227 Query: 220 RKFCKEK--VYYYVEQRDIP-AIQ-GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPK 275 + + + + + + P +I+ T+ LS Y+S G LS R+ W+ L + + K Sbjct: 228 ERVMAREDWISKFEKPKTSPNSIEPSTTVLSMYISHGCLSTRRFWHALCKVYTK-----K 282 Query: 276 SGA---FSWLNELIWREFYRHLMAFYPSV--CMGKPFIPWTEKIEWNKDSHLLQAWKQGY 330 G+ S +L+W+EF PS +G P I +I W+KD L AWK+ Sbjct: 283 GGSKPPVSLKGQLLWKEFNYFSGYSIPSFDKMVGNPVI---RQIPWDKDEEKLMAWKEAR 339 Query: 331 TGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNN 389 TGFP IDAAM QL GW+H+ R A FL + DL W G F LLD D + NN Sbjct: 340 TGFPWIDAAMTQLKDEGWIHHLARHAVACFLTRGDLWQSWEDGAAVFDELLLDADWSINN 399 Query: 390 GGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDK 449 WQW + + YFR ++P GK+ D G +I+ +LP L P++YI+ P W Sbjct: 400 FNWQWLSCSAF-FYQYFRCYSPIAFGKKTDQNGDYIKKYLPALRKFPSKYIYEP--WTAP 456 Query: 450 ND--------LSLNYPLPIVDH---KKACHHTLNQYYAAKKQS 481 + +YP PIVDH KA +N Y A +++ Sbjct: 457 LQVQRGCGCIIGKDYPKPIVDHADTSKANMAKMNDAYDAHQEA 499 >gi|309779656|ref|ZP_07674415.1| deoxyribodipyrimidine photolyase [Ralstonia sp. 5_7_47FAA] gi|308921597|gb|EFP67235.1| deoxyribodipyrimidine photolyase [Ralstonia sp. 5_7_47FAA] Length = 476 Score = 140 bits (352), Expect = 6e-31, Method: Compositional matrix adjust. Identities = 125/448 (27%), Positives = 205/448 (45%), Gaps = 39/448 (8%) Query: 5 TAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFI------ATPEQWRQHGISARQS 58 TA++ L W R+DLR+ D AL AAC + ++ V+ TP + + G+ R Sbjct: 42 TALNTVLFWFRSDLRLHDQPALRAACETGASHLVPVYCHADYEAQTPWGFARVGVHRRA- 100 Query: 59 HFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVR 118 + A+L + + L+ G C + L V YE EV Sbjct: 101 -VLAAALRDLARQLADLGTRL-VECCGPPGKVLPALARAVGASTVVCEDIAAPYEQAEV- 157 Query: 119 RDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLP 178 +L LQ + + +S L+ P + + V+T FR+AL + + S P Sbjct: 158 -AELRSAGLQVQTVWQS----SLIDPLCLPWPVQSLPAVFTTFRQALERARIAP---STP 209 Query: 179 V-PAIRL----TGPVTPSNI--PRFFDYPFQAID---------PMFPIGEQNALHILRKF 222 + P RL +G + P + P + + D P F GE L L ++ Sbjct: 210 LSPPTRLPPWPSGVIIPPGLRAPAYVANQTLSTDSRASFPYGTPEFDGGETAGLRHLAQY 269 Query: 223 CKEKV-YYYVEQRD-IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFS 280 + ++ + Y R+ + + +S+ SP+L+ G LSPR+ + L ++F + + Sbjct: 270 LERQLPHTYKRTRNALAGVDFSSKWSPWLATGALSPRRVISEL-QQFEQSHGQSDGSYWL 328 Query: 281 WLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAM 340 W EL+WR+++R L + + + + D + W++ TG P++DAAM Sbjct: 329 WF-ELLWRDYFRFLHLQHGARLYRARGLANEVRHAERPDVQGFERWRRASTGEPLVDAAM 387 Query: 341 RQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGN 400 R+L T G++ NRLR + AS+LV +L DWR G +F SQL+D D+ SN G W + A G Sbjct: 388 RELETTGYLSNRLRQVVASYLVHELGGDWRAGAAWFESQLVDYDVYSNQGNWLYIAGRGT 447 Query: 401 DSVPYFRIFNPTIQGKRFDPQGTFIRHW 428 D R FN Q +DP G+++R W Sbjct: 448 DPRG-GRRFNVRKQAAEYDPDGSYLRLW 474 >gi|153831636|ref|ZP_01984303.1| cryptochrome dash [Vibrio harveyi HY01] gi|148872146|gb|EDL70963.1| cryptochrome dash [Vibrio harveyi HY01] Length = 450 Score = 140 bits (352), Expect = 6e-31, Method: Compositional matrix adjust. Identities = 134/444 (30%), Positives = 199/444 (44%), Gaps = 53/444 (11%) Query: 8 SVHLVWLRNDLRITDNKALYAACHNSDAKV-------IAVFIATPEQWRQHGISARQSHF 60 ++ L W NDLR+ DN L A DA + ++ F+A Q G + +Q F Sbjct: 4 TIGLYWFTNDLRMHDNPLLTRASEEVDALICVYCYPKLSPFLAHFAQESMFGSAKQQ--F 61 Query: 61 IYASLLQVQKSLS---QKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEV 117 + SL + SL+ Q+ V H ++E L VT L+ + E Sbjct: 62 LDESLHCLNLSLNAFDQRLQVVDLHPYQAIKHAVEKLG-------VTHLYCDAFSGSEEQ 114 Query: 118 RRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQ-MYKVYTPFRKALIQNLVQADLRS 176 + + +H IC+ S+ L AL+ + +T FRK +A+ S Sbjct: 115 DVVDHIRQESEHLTICQQEVRSLFTVED--LPFALEDLPDTFTKFRK-------KAEKVS 165 Query: 177 LPVPAIRLTG-PVTPSNIPRFFDYPFQAIDP-MFPIGEQNAL-HILRKFCKEKVYYYVEQ 233 L P + +T P+TPS + + + P +F GEQ L H R F Y + Sbjct: 166 LAEPFVTVTALPLTPSGLALPTLRLIRDVKPCLFTGGEQAGLEHARRYFSSTLASEYKQT 225 Query: 234 RD-IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFY- 291 R+ + + +++ SP+L+ G LSP+ + LK + L + EL+WRE++ Sbjct: 226 RNGLDGMDYSTKFSPWLANGCLSPKTIYAMLKR--YERLKGANESTYWIYFELLWREYFY 283 Query: 292 -------RHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLN 344 R L F + P + +H Q WK+G T FPI++A M QLN Sbjct: 284 WYARRHKRQLFRF-GGIQNQAPLTSFY--------AHRFQQWKKGETPFPIVNACMHQLN 334 Query: 345 TIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVP 404 G+M NR R + AS LV +L +DWR G YF SQL+D D+ASN G WQ+ A G D Sbjct: 335 ETGYMSNRGRQLVASCLVHELGLDWRYGAAYFESQLVDYDVASNWGNWQYLAGVGADPRG 394 Query: 405 YFRIFNPTIQGKRFDPQGTFIRHW 428 R FN Q + +DP FI W Sbjct: 395 S-RQFNLEKQTEMYDPHMEFIDRW 417 >gi|78212258|ref|YP_381037.1| deoxyribodipyrimidine photo-lyase type I [Synechococcus sp. CC9605] gi|78196717|gb|ABB34482.1| Deoxyribodipyrimidine photolyase [Synechococcus sp. CC9605] Length = 493 Score = 140 bits (352), Expect = 7e-31, Method: Compositional matrix adjust. Identities = 132/467 (28%), Positives = 197/467 (42%), Gaps = 53/467 (11%) Query: 8 SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67 ++ +VW + DLRI D++ L AA V+ +++ PE WRQ S RQ F SLL+ Sbjct: 3 ALQIVWFKRDLRIVDHQPLAAAVER--GLVLPLYVVEPELWRQPDASERQWMFCRESLLE 60 Query: 68 VQKSLSQKG--------IVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINE-VR 118 ++++L+ +G V Q + + I+ L S+ ++ Y R + R Sbjct: 61 LRQALADRGQPLVVRAGDVVQVLERARRQFGIDGLWSH--EETGNGWTYQRDKRVGAWAR 118 Query: 119 RDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLP 178 R + L + + G +QM + TP AL Q L D +P Sbjct: 119 RHGIAWMELPQFGVTRRMHSR----NGWAKRWEVQMTEPITPVPAAL-QALDGIDHGVIP 173 Query: 179 VPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIP- 237 P + P + I G L L F + + Y P Sbjct: 174 E---------RPCSELLLDACPQRQIG-----GRSTGLEELNDFLQHRAQRYQRSMSSPN 219 Query: 238 -AIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMA 296 A G S+LS YL+ G LS ++E G S+ + L W + + Sbjct: 220 TAFTGCSRLSTYLTWGCLS-------MREVLQTSRTHSGRGVSSFESRLHWHCHFIQKLE 272 Query: 297 FYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMI 356 P++ F P+ I D+ L AW +G TG P +DA MR L GW++ R+R + Sbjct: 273 DQPAIEFSD-FHPFMRGIR-AADAERLTAWSEGRTGVPFVDACMRALRAHGWINFRMRAM 330 Query: 357 TASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGW-QWAASTGNDSVPYFRIFNPTIQG 415 SF +L + WR + Q +D + + W Q +G+ S+ RI+NP QG Sbjct: 331 LMSFASYNLWLPWRDSGLHLARQFVDYEPGIH---WSQCQMQSGSTSINTIRIYNPIKQG 387 Query: 416 KRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVD 462 DPQG FIR W PEL +VPT +IH P W+ L P PIVD Sbjct: 388 MDHDPQGLFIRQWCPELKDVPTIHIHEP--WM----LGGGMPAPIVD 428 >gi|195157984|ref|XP_002019874.1| GL12637 [Drosophila persimilis] gi|198455482|ref|XP_001360014.2| GA17677 [Drosophila pseudoobscura pseudoobscura] gi|205696352|sp|Q293P8|CRY1_DROPS RecName: Full=Cryptochrome-1 gi|194116465|gb|EDW38508.1| GL12637 [Drosophila persimilis] gi|198133263|gb|EAL29166.2| GA17677 [Drosophila pseudoobscura pseudoobscura] Length = 540 Score = 139 bits (351), Expect = 7e-31, Method: Compositional matrix adjust. Identities = 133/523 (25%), Positives = 225/523 (43%), Gaps = 66/523 (12%) Query: 8 SVHLVWLRNDLRITDNKALYAACHNSDAKV--IAVFIATPEQWRQHGISARQSHFIYASL 65 +++W R+ LR+ DN AL AA D + I VFI E + + F+ SL Sbjct: 5 GANVLWFRHGLRLHDNPALLAALEEKDQGIPLIPVFIFDGESAGTKSVGYNRMRFLLDSL 64 Query: 66 L----QVQKSLSQKGIVFQYHQ-----CSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINE 116 Q+Q + +G +F + + + L C + ++ R Sbjct: 65 QDLDEQLQSATEGRGRLFVFEGEPTLIFRRLHEQVR-LHKICAELDCEPIWNERDESARL 123 Query: 117 VRRDKLLE--KRLQH-----RVICKSFDDSVLLPPGS--ILNHALQMYKVYTPFRKALIQ 167 + R+ +E +++ H R++ ++ +PP + + H +Q+ V P R A+ Sbjct: 124 LCRELGIEYVEKVSHTLWDPRLVIETNGG---IPPLTYQMFLHTVQIIGV--PPRPAIDA 178 Query: 168 NLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPI----GEQNALHILRKFC 223 ++ A L + G P F+ + + I GE AL +L + Sbjct: 179 HINDATFIQLAPELRQHLGCFDQVPNPEHFNIYSDNMGFLAKINWRGGETQALALLEERL 238 Query: 224 K------EKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPK-- 275 K E+ YY Q + + +S +L G LS R+ + + + F ++ + Sbjct: 239 KVERNAFERGYYLPNQANPNIQEAPKSMSAHLRFGCLSVRRFYWSVHDLFENVQLAACVR 298 Query: 276 ----SGAFSWLNELIWREFYRHLMAFYPS--------VCMGKPFIPWTEKIEWNKDSHLL 323 G +LIWRE++ + P+ +C+ IPW + D +LL Sbjct: 299 GVQIEGGAHITGQLIWREYFYTMSVNNPNYDRMEGNEICLT---IPWAKP-----DENLL 350 Query: 324 QAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLD 382 Q W+ G TGFP+ID AMRQL GW+H+ LR A+FL + L W G ++F+ LLD Sbjct: 351 QRWRLGQTGFPLIDGAMRQLLAEGWLHHTLRNTVATFLTRGGLWQSWEPGLKHFLKYLLD 410 Query: 383 GDLASNNGGWQWAASTGNDSVPYFRIFN-PTIQGKRFDPQGTFIRHWLPELNNVPTQYIH 441 D + G W W +S+ + + + P KR DP+G +IR ++PEL N+P +YIH Sbjct: 411 ADWSVCAGNWMWVSSSAFERLLDSSLVTCPVALAKRLDPEGVYIRRYVPELKNLPKEYIH 470 Query: 442 APHSWLDKND------LSLNYPLPIVDHKKACHHTLNQYYAAK 478 P + + ++YP I+D KA + A + Sbjct: 471 EPWRLSAEQQVKFECLIGVHYPERIIDLSKAVKRNMMAMTALR 513 >gi|157412732|ref|YP_001483598.1| deoxyribodipyrimidine photolyase [Prochlorococcus marinus str. MIT 9215] gi|157387307|gb|ABV50012.1| Deoxyribodipyrimidine photolyase [Prochlorococcus marinus str. MIT 9215] Length = 497 Score = 139 bits (351), Expect = 8e-31, Method: Compositional matrix adjust. Identities = 127/480 (26%), Positives = 208/480 (43%), Gaps = 57/480 (11%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 ++++W + DLRI +N+ALY + ++D ++ ++I E W Q S RQ F S+L + Sbjct: 4 INILWFKKDLRIDENEALYESLKDND--ILPIYIFEIEVWNQKTHSRRQWQFCKESVLDL 61 Query: 69 QKSLSQKG--IVFQYHQCSNFDDSIEW----LDSYCLQQRVTKLFYNRQYEINEVRRDKL 122 + SL + G ++ + N + I + Y Q+ + Y R E+ +K Sbjct: 62 RNSLKEIGQPLIIRTGNVINIFEEISSKFNVVGIYSHQETGDWVTYKRDKEVKLWAANK- 120 Query: 123 LEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAI 182 ++I + F S+ + ++K + L++ LR P+ Sbjct: 121 -------KIIWREF------LQFSVFRGNINRDDWSKKWKKNTERELIKRPLRISPID-- 165 Query: 183 RLTGPVTPSNIP--RFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIP--A 238 IP + F + G + + ++ F EK+ Y + P + Sbjct: 166 -----FDIGEIPDEKIFSFKKDECKGSLKGGRKKGIERMQYFFNEKLNSYSKNISSPEKS 220 Query: 239 IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFY 298 S+LSPY+S G +S LKE F + + + + + L W + + Sbjct: 221 FDSCSRLSPYISWGCIS-------LKEIFYKANLNKNNNSIMFKSRLTWHCHFIQKLESE 273 Query: 299 PSV--CMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMI 356 P + C P+ K K++ LL W QG TG+P IDA MR LN GW++ R+R + Sbjct: 274 PELEFCDFHPYF----KNSRTKNTELLLLWSQGNTGYPFIDACMRSLNFNGWINFRMRAM 329 Query: 357 TASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGW-QWAASTGNDSVPYFRIFNPTIQG 415 SF +L + W+ ++ +D + + W Q +G S+ RI+NP QG Sbjct: 330 LMSFASYNLWLPWQDSGSELANKFVDYEPGIH---WNQCQMQSGTTSINTNRIYNPIKQG 386 Query: 416 KRFDPQGTFIRHWLPELNNVPTQYIHAPHSW-LDKNDLS----LNYPLPIVDHKKACHHT 470 K DP+G FIR W+PEL NV +IH P W L K + L Y PIVD K Sbjct: 387 KDHDPEGEFIRKWVPELKNVAIDFIHEP--WILSKFNCDEYAKLEYIKPIVDISKTSREA 444 >gi|133754344|gb|ABO38436.1| (6-4) photolyase [Danaus plexippus] Length = 501 Score = 139 bits (351), Expect = 8e-31, Method: Compositional matrix adjust. Identities = 137/523 (26%), Positives = 233/523 (44%), Gaps = 84/523 (16%) Query: 5 TAMSVHLVWLRNDLRITDNKALYAACHNSDAK---VIAVFIATPEQWRQHGISARQSHFI 61 T ++ + W R DLR+ DN AL A + ++ + + +++ P+ ++ + + F+ Sbjct: 2 TKVASVIHWFRLDLRLHDNLALRNAINEAENRKQILRPIYVIDPDI--KNRVGCNRLRFL 59 Query: 62 YASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDK 121 + SL + SL + + +IE L + V L + + V++D+ Sbjct: 60 FQSLKNLDTSLRKINTRLYVIKGK----AIECLPKLFDEWHVKFLTLQVDIDADLVKQDE 115 Query: 122 LLE-----------KRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLV 170 ++E KR+QH V F+ V GSI L K + +++++ Sbjct: 116 VIEEFCEANNIFVVKRMQHTVY--DFNSVVKKNNGSI---PLTYQKFLSLVSDVQVKDII 170 Query: 171 QA-------------DLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALH 217 Q D + +P++ G V S + + +P GE L Sbjct: 171 QISKGVSDECKASDYDSQGYDIPSLEEFG-VNESELS----------ECKYPGGESEGLK 219 Query: 218 ILRKFCKEK--VYYYVEQRDIP-AIQ-GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIK 273 L + +K V + + + P +I+ T+ LSPY+S G LS + +++LK+ V+ K Sbjct: 220 RLDVYMAKKQWVCNFEKPKSSPNSIEPSTTVLSPYISHGCLSAKLFYHKLKQ--VENGSK 277 Query: 274 PKSGAFSWLNELIWREFYRHLMAFYP--------SVCMGKPFIPWTEKIEWNKDSHLLQA 325 S + +L+WREFY + SVC +I W K+ L+A Sbjct: 278 HTLPPVSLMGQLMWREFYYTAGSGTENFDKMVGNSVCT---------QIPWKKNDAHLKA 328 Query: 326 WKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGD 384 W +G TG+P +DA MRQL GW+H+ R + A FL + DL + W G + F LLD D Sbjct: 329 WAEGKTGYPFVDAIMRQLKQEGWIHHLARHMVACFLTRGDLWISWEEGAKVFEDFLLDYD 388 Query: 385 LASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPH 444 + N G W W +++ Y+R+++P GK+ D G +IR ++PEL P+++I+ P Sbjct: 389 WSLNAGNWMWLSASAF-FYKYYRVYSPVAFGKKTDKDGLYIRKYVPELKKYPSEFIYEP- 446 Query: 445 SWLDKND--------LSLNYPLPIVDHKKACHHTLNQYYAAKK 479 W + YP IVDH K + + AA K Sbjct: 447 -WKAPKGVQKTAGCIIGEGYPNRIVDHDKVHKDNIQKMNAAYK 488 >gi|24648152|ref|NP_732407.1| cryptochrome [Drosophila melanogaster] gi|74960862|sp|O77059|CRY1_DROME RecName: Full=Cryptochrome-1; Short=DmCRY1; Short=dcry; AltName: Full=Blue light photoreceptor gi|3724370|dbj|BAA33787.1| blue-light receptor [Drosophila melanogaster] gi|3983154|gb|AAC83828.1| cryptochrome [Drosophila melanogaster] gi|7300494|gb|AAF55649.1| cryptochrome [Drosophila melanogaster] gi|15291339|gb|AAK92938.1| GH16672p [Drosophila melanogaster] gi|220945540|gb|ACL85313.1| cry-PA [synthetic construct] gi|220955344|gb|ACL90215.1| cry-PA [synthetic construct] Length = 542 Score = 139 bits (351), Expect = 8e-31, Method: Compositional matrix adjust. Identities = 128/478 (26%), Positives = 212/478 (44%), Gaps = 52/478 (10%) Query: 8 SVHLVWLRNDLRITDNKALYAACHNSDAKV--IAVFIATPEQWRQHGISARQSHFIYASL 65 +++W R+ LR+ DN AL AA + D + I VFI E + + F+ SL Sbjct: 5 GANVIWFRHGLRLHDNPALLAALADKDQGIALIPVFIFDGESAGTKNVGYNRMRFLLDSL 64 Query: 66 L----QVQKSLSQKG--IVFQYHQCSNFDDSIEW--LDSYCLQQRVTKLFYNRQYEINEV 117 Q+Q + +G +VF+ F E L C++Q ++ R I + Sbjct: 65 QDIDDQLQAATDGRGRLLVFEGEPAYIFRRLHEQVRLHRICIEQDCEPIWNERDESIRSL 124 Query: 118 RRDKLLEKRLQHRVICKSFDDSVLLPP-GSILNHALQMYK-----VYTPFRKALIQNLVQ 171 R+ L +V +D +++ G I QM+ + P R L Sbjct: 125 CRE--LNIDFVEKVSHTLWDPQLVIETNGGIPPLTYQMFLHTVQIIGLPPRPTADARLED 182 Query: 172 ADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPI----GEQNALHILRKFCKEKV 227 A L R P F+ + + I GE AL +L + K + Sbjct: 183 ATFVELDPEFCRSLKLFEQLPTPEHFNVYGDNMGFLAKINWRGGETQALLLLDERLKVEQ 242 Query: 228 Y-----YYVEQRDIPAIQGTSQ-LSPYLSIGVLSPRQCWNRLKEEFVDLLIKP------K 275 + +Y+ + +P I + + +S +L G LS R+ + + + F ++ ++ Sbjct: 243 HAFERGFYLPNQALPNIHDSPKSMSAHLRFGCLSVRRFYWSVHDLFKNVQLRACVRGVQM 302 Query: 276 SGAFSWLNELIWREFYRHLMAFYPS--------VCMGKPFIPWTEKIEWNKDSHLLQAWK 327 +G +LIWRE++ + P+ +C+ IPW + E +LLQ+W+ Sbjct: 303 TGGAHITGQLIWREYFYTMSVNNPNYDRMEGNDICLS---IPWAKPNE-----NLLQSWR 354 Query: 328 QGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLA 386 G TGFP+ID AMRQL GW+H+ LR A+FL + L W G ++F+ LLD D + Sbjct: 355 LGQTGFPLIDGAMRQLLAEGWLHHTLRNTVATFLTRGGLWQSWEHGLQHFLKYLLDADWS 414 Query: 387 SNNGGWQWAASTGNDSVPYFRIFN-PTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAP 443 G W W +S+ + + + P KR DP GT+I+ ++PEL NVP +++H P Sbjct: 415 VCAGNWMWVSSSAFERLLDSSLVTCPVALAKRLDPDGTYIKQYVPELMNVPKEFVHEP 472 >gi|291290513|dbj|BAI82612.1| cryptochrome 2 [Xenopus (Silurana) tropicalis] Length = 557 Score = 139 bits (350), Expect = 9e-31, Method: Compositional matrix adjust. Identities = 139/500 (27%), Positives = 213/500 (42%), Gaps = 55/500 (11%) Query: 8 SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67 SVH W R LR+ DN AL AA ++ + V V+I P + F+ SL Sbjct: 3 SVH--WFRKGLRLHDNPALSAALRDATS-VRCVYILDPWFAASSSGGVNRWRFLLQSLED 59 Query: 68 VQKSLSQ---KGIVFQYHQCSNFDDSI-EWLDSYCLQQRVTKLFYNRQYEINEVRRDKLL 123 + SL + + V + F EW V++L + E RD ++ Sbjct: 60 LDTSLRKLNSRLFVVRGQPADVFPRLFKEW--------GVSRLTFEYDSEPFGKERDAVI 111 Query: 124 EKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLV-QADLRSLPVPAI 182 K + + ++S L L+ +++ P Q ++ + +L P P++ Sbjct: 112 MKLAKEAGVEVIVENSHTL---YDLDRIIELNGHSPPLTYKRFQAIISRMELPRRPAPSV 168 Query: 183 -RLTGPVTPSNIPRFFD--YPFQAIDPM-----------FPIGEQNALHILRKFCKEKVY 228 R + I R D Y ++D + +P GE AL L + + K + Sbjct: 169 TRQQMEACRAEIKRNHDETYGVPSLDELGFHSEIKGPSIWPGGETEALARLDRHLERKAW 228 Query: 229 YYVEQRDIPAIQGTS------QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWL 282 V + P + S LSPYL G LS R + RLKE + + K S Sbjct: 229 --VANYERPRMNANSLLASPTGLSPYLRFGCLSCRLFYYRLKELYKKVK-KNSPPPLSLY 285 Query: 283 NELIWREFYRHLMAFYPSV--CMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAM 340 +L+WREF+ P G P +I W+K+ L W +G TGFP IDA M Sbjct: 286 GQLLWREFFYTAATNNPKFDQMEGNPI---CVQIPWDKNPKALAKWAEGKTGFPWIDAIM 342 Query: 341 RQLNTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTG 399 QL GW+H+ R A FL + DL W G + F LLD D + N G W W + + Sbjct: 343 TQLRQEGWIHHLARHAVACFLTRGDLWNSWECGVKVFDELLLDADFSVNAGSWMWLSCSA 402 Query: 400 NDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLD------KNDLS 453 +F + P G+R DP G ++R +LP L P++YI+ P S + K + Sbjct: 403 FFQQ-FFHCYCPVGFGRRTDPSGDYVRRYLPVLKAFPSRYIYEPWSAPESVQKEAKCIIG 461 Query: 454 LNYPLPIVDHKKACHHTLNQ 473 ++YP PIV+H +A + + Sbjct: 462 IDYPKPIVNHAEASRMNIER 481 >gi|195497880|ref|XP_002096288.1| GE25590 [Drosophila yakuba] gi|194182389|gb|EDW96000.1| GE25590 [Drosophila yakuba] Length = 542 Score = 139 bits (350), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 128/478 (26%), Positives = 213/478 (44%), Gaps = 52/478 (10%) Query: 8 SVHLVWLRNDLRITDNKALYAACHNSDAKV--IAVFIATPEQWRQHGISARQSHFIYASL 65 +++W R+ LR+ DN AL AA + D + I VFI E + + F+ SL Sbjct: 5 GANVIWFRHGLRLHDNPALLAALADKDQGIALIPVFIFDGESAGTKNVGYNRMRFLLDSL 64 Query: 66 L----QVQKSLSQKG--IVFQYHQCSNFDDSIEW--LDSYCLQQRVTKLFYNRQYEINEV 117 Q+Q + +G +VF+ + F E L C++Q ++ +R I + Sbjct: 65 QDIDDQLQAATDGRGRLLVFEGEPANIFRRLHEQVRLHRICIEQDCEPIWNDRDESIRFL 124 Query: 118 RRDKLLEKRLQHRVICKSFDDSVLLPP-GSILNHALQMYK-----VYTPFRKALIQNLVQ 171 R+ L +V +D +++ G I QM+ + P R L Sbjct: 125 CRE--LNIDFVEKVSHTLWDPQLVIETNGGIPPLTYQMFLHTVQIIGLPPRPTADARLED 182 Query: 172 ADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPI----GEQNALHILRKFCKEKV 227 A L R P F+ + + I GE AL +L + K + Sbjct: 183 ATFVELDSEFCRSLNLFEKLPAPDHFNVYTDNMGFLAKINWRGGETQALLLLDERLKVEQ 242 Query: 228 Y-----YYVEQRDIPAIQGTSQ-LSPYLSIGVLSPRQCWNRLKEEFVDLLIKP------K 275 + +Y+ + +P I + + +S +L G LS R+ + + + F ++ ++ Sbjct: 243 HAFERGFYLPNQALPNIHDSPKSMSAHLRFGCLSVRRFYWSVHDLFKNVQLRACVRGVQM 302 Query: 276 SGAFSWLNELIWREFYRHLMAFYPS--------VCMGKPFIPWTEKIEWNKDSHLLQAWK 327 +G +LIWRE++ + P+ +C+ IPW + E LLQ W+ Sbjct: 303 TGGAHLTGQLIWREYFYTMSVNNPNYDRMEGNEICLS---IPWAKPKE-----DLLQRWR 354 Query: 328 QGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLA 386 G TGFP+ID AMRQL GW+H+ LR A+FL + L W G ++F+ LLD D + Sbjct: 355 LGQTGFPLIDGAMRQLLAEGWLHHTLRNTVATFLTRGGLWQSWEHGLQHFLKYLLDADWS 414 Query: 387 SNNGGWQWAASTGNDSVPYFRIFN-PTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAP 443 G W W +S+ + + + P KR DP+GT+I+ ++PEL NVP +++H P Sbjct: 415 VCAGNWMWVSSSAFERLLDSSLVTCPVALAKRLDPEGTYIKQYVPELINVPREFVHEP 472 >gi|148242284|ref|YP_001227441.1| deoxyribodipyrimidine photolyase [Synechococcus sp. RCC307] gi|147850594|emb|CAK28088.1| Deoxyribodipyrimidine photolyase [Synechococcus sp. RCC307] Length = 503 Score = 139 bits (350), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 130/491 (26%), Positives = 207/491 (42%), Gaps = 47/491 (9%) Query: 2 KATTAMSV-------HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGIS 54 ++TTA SV +VW + DLR D+ AL A + V+ +FI P W Q S Sbjct: 10 RSTTAESVSEPNQPLQVVWFKRDLRTIDHGALSQA--SRSGPVLPLFIVEPMFWAQPDAS 67 Query: 55 ARQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEI 114 ARQ F SL +++++L+ G +++ L + Q+ + +L+ +++ Sbjct: 68 ARQWEFCAESLAELREALAALGQPL----VIRTGEALAVLKALHRQRGIAQLWSHQETGN 123 Query: 115 N-EVRRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQAD 173 + RRD+L+ + C+ P + A+ + P + L++ V AD Sbjct: 124 DFTYRRDRLVAR------WCREQSIRWHQPRSFGVIRAMGNRDGWAPAWELLMRQSVCAD 177 Query: 174 LRSLPVPAIRLTGPVTPSNIPRFFDY--PFQAIDPMFPIGEQNALHILRKFCKEKVYYYV 231 P P RL G + P IP D P G +L F + Y Sbjct: 178 ----PAPLTRLGG-IDPGGIPSADDLKLPSDPCPGRQRGGRSQGAALLESFLHHRGRRYA 232 Query: 232 EQRDIP--AIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWRE 289 ++ P A + S+LS +L+ G LS R+ + + +G +++ L W Sbjct: 233 KELSSPLTAFESCSRLSAHLTFGTLSMRE---------IVQTARLNNGPKAFVERLHWHC 283 Query: 290 FYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWM 349 + + PS+ + D L W +G TG+P +DA MR L GW+ Sbjct: 284 HFIQKLESQPSLEYQNAHRAYDGLRA--DDPQRLALWIEGRTGWPFVDACMRALRHHGWI 341 Query: 350 HNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGW-QWAASTGNDSVPYFRI 408 + R+R + S L + WR E +D + + W Q +G + RI Sbjct: 342 NFRMRAMLMSVASYQLWLPWRQSGEALARLFVDYEPGIH---WNQCQMQSGTSGINTVRI 398 Query: 409 FNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACH 468 +NP QG DP+G FIR WLPEL VP IH P WL YP P+VD++ A Sbjct: 399 YNPIKQGLDHDPEGAFIRQWLPELQGVPVSGIHTP--WLLAQPPE-TYPHPVVDYEAAAR 455 Query: 469 HTLNQYYAAKK 479 +Q + +K Sbjct: 456 QARDQVWGLRK 466 >gi|119471065|ref|ZP_01613624.1| Deoxyribodipyrimidine photolyase [Alteromonadales bacterium TW-7] gi|119445905|gb|EAW27186.1| Deoxyribodipyrimidine photolyase [Alteromonadales bacterium TW-7] Length = 436 Score = 139 bits (350), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 112/444 (25%), Positives = 200/444 (45%), Gaps = 59/444 (13%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPE-----QWRQHGISARQSHFIYASL 65 L WL+NDLR+ DN +++ + VF+ P ++Q + F+ SL Sbjct: 6 LYWLKNDLRLNDN-PIFSKLALQQCALDVVFVINPNWFKNTNYQQKQYGENKYTFLMQSL 64 Query: 66 LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125 ++Q++L +G + + + L +Q + ++ Y+ Q+ + E R LL+ Sbjct: 65 YELQQALIARGQTLHVLE----GEPVSVLKQRIKEQHIDEVVYSEQFGVYEQREINLLKA 120 Query: 126 RLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185 + D+ L + + + K +TPF+K + + ++P+ +T Sbjct: 121 HCPQIQFTGTLQDT-LYQQNELPFNLTDLPKSFTPFKK-------KVEAANIPITLSHIT 172 Query: 186 GPVTPSNIPRFFDYPFQAIDPMFPIGEQNALH----ILRKFCKE------KVYYYVEQRD 235 + P I P + P N++H +K C++ Y + + Sbjct: 173 TELLPKPITLCAKNPIE-----LPKAINNSMHGGLTSAQKHCEQYFAGELPSTYKITRNA 227 Query: 236 IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLN-ELIWREFYR-H 293 + T++ SP+L+ G +S +Q +N + E++ S W+ EL+WRE+++ H Sbjct: 228 LDGFDNTTKFSPWLAFGCISAKQIYNAV-EQYEQTYTANDSTY--WIKFELLWREYFKWH 284 Query: 294 LMAFYPSVCMGK---------PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLN 344 + S+ K F+P + AW QG T +P+++A M++LN Sbjct: 285 ALNVQSSLFSFKGQKQTKPLTTFMP-----------NRFAAWCQGTTPYPLVNAIMKELN 333 Query: 345 TIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVP 404 G++ NR R I AS LV +L +DWR G YF QL+D D+A+N G WQ+ A G D Sbjct: 334 ATGFITNRSRQIVASCLVNELGLDWRYGAAYFEQQLIDHDVAANWGNWQYIAGVGVDPRG 393 Query: 405 YFRIFNPTIQGKRFDPQGTFIRHW 428 R FN Q ++FDP+ + + W Sbjct: 394 -GRHFNIEKQTQQFDPKSIYTKKW 416 >gi|88802912|ref|ZP_01118439.1| putative deoxyribodipyrimidine photolyase [Polaribacter irgensii 23-P] gi|88781770|gb|EAR12948.1| putative deoxyribodipyrimidine photolyase [Polaribacter irgensii 23-P] Length = 486 Score = 139 bits (350), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 137/504 (27%), Positives = 222/504 (44%), Gaps = 74/504 (14%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 +++VWL+ DLR+ D+ L+ A I ++ P S R F+Y SL + Sbjct: 6 INIVWLKRDLRLRDHVPLHTA-EQKGVPYIIIYFFEPSIIEYPDTSPRHLQFVYHSLKSL 64 Query: 69 QKSLS---QKGIVFQYHQCSNFD-----DSIEWLDSYCLQQRVTKLFYNRQYEI------ 114 K L+ +K VF F+ SI+ L SY Q+ K + R +I Sbjct: 65 DKGLANYNRKVEVFYGEAMDIFNFLNTHYSIQQLFSY--QESGLKKTWQRDKKIRAFCAI 122 Query: 115 -----NEVRRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNL 169 E +RD ++ K + ++ P IL + + K+ T ++ Sbjct: 123 NNIYWEESQRDGIIRGLKNRDTWNKRWHAAMHTP---ILKNNYSVSKLNTVEHAYVLPQE 179 Query: 170 VQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYY 229 + A L N P+ + P GE+NA L F +++ + Sbjct: 180 LVAKL----------------ENYPKHYQ----------PAGEENAWRYLTSFTQKRGFN 213 Query: 230 YVEQRDIPAIQ--GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFS-WLNELI 286 Y P S+LSPY + G +S +Q ++ + + + AFS L L Sbjct: 214 YHRHISKPTESRIACSRLSPYFAWGNISIKQVFHYVGKHPNGT---ANNRAFSGMLTRLH 270 Query: 287 WREFYRH---LMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQL 343 W + + Y ++C+ K + E + K++ L+AWK G TG+P+IDA MR + Sbjct: 271 WHCHFIQKFEVECTYETLCVNKGY----ELLAHKKNALFLKAWKTGQTGYPLIDACMRAV 326 Query: 344 NTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQW-AASTGNDS 402 GW++ R+R + SFL +L DWR G + Q LD + + +Q A +TG ++ Sbjct: 327 EQTGWINFRMRAMVVSFLTLNLDQDWRDGVYHLACQFLDYEPGIHYPQFQMQAGTTGINT 386 Query: 403 VPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAP--HSWLDKN----DLSLNY 456 V R++NP + DPQG FI+ W+PEL NVP YIH P S +++ + +Y Sbjct: 387 V---RLYNPVKNSEEHDPQGVFIKKWVPELENVPEAYIHEPWTMSLMEQAFCGVAIGEDY 443 Query: 457 PLPIVDHKKACHHTLNQYYAAKKQ 480 PLPIVD K + ++ + KK Sbjct: 444 PLPIVDLKTSAKLARDKIWGHKKH 467 >gi|156977901|ref|YP_001448807.1| deoxyribodipyrimidine photolyase [Vibrio harveyi ATCC BAA-1116] gi|156529495|gb|ABU74580.1| hypothetical protein VIBHAR_06693 [Vibrio harveyi ATCC BAA-1116] Length = 460 Score = 139 bits (350), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 137/444 (30%), Positives = 200/444 (45%), Gaps = 53/444 (11%) Query: 8 SVHLVWLRNDLRITDNKALYAACHNSDAKV-------IAVFIATPEQWRQHGISARQSHF 60 ++ L W NDLR+ DN L A DA + ++ F+A Q G + +Q F Sbjct: 14 TIGLYWFTNDLRMHDNPLLARASEEVDALIFVYCYPKLSPFLAHFAQESMFGSAKQQ--F 71 Query: 61 IYASLLQVQKSLS---QKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEV 117 + SL V +L+ Q+ V H ++E L C VT L+ + E Sbjct: 72 LDESLHCVNLTLNAFDQRLQVVDLHPYQAIKHAVEKL---C----VTHLYCDTFPGSEER 124 Query: 118 RRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQ-MYKVYTPFRKALIQNLVQADLRS 176 + + L+H IC+ S+L L AL+ + +T FRK +A+ S Sbjct: 125 DVVDHIRQELEHLTICQQEVRSLLTVED--LPFALEDLPDTFTKFRK-------KAENVS 175 Query: 177 LPVPAIRLTG-PVTPSNIPRFFDYPFQAIDP-MFPIGEQNAL-HILRKFCKEKVYYYVEQ 233 L P +T P TPS + + + P +F GEQ L H R F Y + Sbjct: 176 LEEPFATVTALPPTPSGLALPTLRLIRDVKPCLFTGGEQAGLEHARRYFSSTLASEYKQT 235 Query: 234 RD-IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFY- 291 R+ + + +++ SP+L+ G LSP+ + LK + L + EL+WRE++ Sbjct: 236 RNGLDGMDYSTKFSPWLAHGCLSPKTIYAMLKR--YERLKGANESTYWIYFELLWREYFY 293 Query: 292 -------RHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLN 344 R L F + P + +H Q WK+G T FPI++A M QLN Sbjct: 294 WYARRHKRQLFRF-GGIQNQAPLTSFY--------AHRFQQWKKGETPFPIVNACMHQLN 344 Query: 345 TIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVP 404 G+M NR R + AS LV +L +DWR G YF SQL+D D+ASN G WQ+ A G D Sbjct: 345 ETGYMSNRGRQLVASCLVHELGLDWRYGAAYFESQLVDYDVASNWGNWQYLAGVGADPRG 404 Query: 405 YFRIFNPTIQGKRFDPQGTFIRHW 428 R FN Q + +DP FI W Sbjct: 405 S-RQFNLEKQTEIYDPHMEFIDRW 427 >gi|47207105|emb|CAF92156.1| unnamed protein product [Tetraodon nigroviridis] Length = 755 Score = 139 bits (349), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 134/476 (28%), Positives = 207/476 (43%), Gaps = 61/476 (12%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQ-HGISARQS----HFIYASL 65 L+W R DLR+ DN AL AA A VI +FI +PE+ G++ ++++ +L Sbjct: 106 LLWFRRDLRLCDNPALTAALEVG-APVIPIFIWSPEEEEGPAGVTVATGGACKYWLHQAL 164 Query: 66 LQVQKSLSQKG--IVF--QYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDK 121 + SL + G +VF S++ L + + N YE RD Sbjct: 165 SCLCASLERNGSHLVFLRSAEAGGEGGSSLQTLKELVKETGARTVMANALYEPWLKDRDH 224 Query: 122 LLEKRL-QHRVICKSFDDSVLLPPGSILNHALQMYKV--YTPFRKALIQN---LVQADLR 175 L + V CK F L P S+ + + + + F QN + A L Sbjct: 225 AAAVALWKSGVECKMFHSYCLRDPYSVRTEGVGLRGIGSVSHFLSCCRQNPGPALGAPLE 284 Query: 176 ---SLPVPAIRLTGP----VTPSNIPRFFDYP----FQAIDPMFPIGEQNALHILRKFCK 224 +LPVPA G + + +PR D +I + E+ A L F Sbjct: 285 PPTALPVPAHWPRGAPLEALGLARMPRRKDGTTVDWAASIRKSWDFSEEGAHARLEAFLG 344 Query: 225 EKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNE 284 + VY Y ++ TS +SPYL G LSPR W L + PK + + Sbjct: 345 DGVYRYDKESGRADAPNTSCVSPYLHFGQLSPR--WV-LWDAKAARCRPPK-----FQRK 396 Query: 285 LIWREFYRHLMAFYPSVCMGKPFIPWT------EKIEWNKDSHLLQAWKQGYTGFPIIDA 338 L WR+ ++ +P +PW + + W+ D L+AW++G TG+P++DA Sbjct: 397 LAWRDLAYWQLSLFPE-------LPWESLRPPYKALRWSSDRRHLKAWQRGGTGYPLVDA 449 Query: 339 AMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYF-----------MSQLLDGDLAS 387 AMRQL GWM+N +R + ASFL+ L + W+ G +F L+D D+A Sbjct: 450 AMRQLWLTGWMNNYMRHVVASFLIAYLHLPWQEGYRWFQVRNGCRGDTGQDTLVDADVAI 509 Query: 388 NNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAP 443 + WQ G D + + +P DP G+++R W PEL+ +P + IH P Sbjct: 510 DAMMWQNGGMCGLDHWNF--VMHPVDAAMTCDPDGSYVRKWCPELSGLPDELIHKP 563 >gi|30088882|gb|AAP13561.1| cryptochrome 2 [Rana catesbeiana] Length = 543 Score = 139 bits (349), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 136/498 (27%), Positives = 208/498 (41%), Gaps = 49/498 (9%) Query: 1 MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATP--EQWRQHGISARQS 58 M+ SVH W R LR+ DN AL AA + V V+I P + Sbjct: 1 MEGPAVSSVH--WFRKGLRLHDNPALLAALRGARC-VRCVYILDPWFAASSSSSGGVNRW 57 Query: 59 HFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVR 118 F+ SL + SL + G + D + VT+L + E Sbjct: 58 RFLLQSLEDLDSSLRKLGSRLFVGRGQPADVFPRLFKEWG----VTRLTFQYYSEPFGKE 113 Query: 119 RDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLV-QADLRSL 177 RD + K + + + S L L+ +++ P Q +V + +L Sbjct: 114 RDAAIMKLAKEAGVEVIVESSHTL---YDLDKIIELNGNSPPLTYKRFQAIVSRMELPRR 170 Query: 178 PVPAI------RLTGPVTPS-----NIPRFFDYPFQAIDP---MFPIGEQNALHILRKFC 223 PVP+I + + + +P + F +P ++P GE AL L + Sbjct: 171 PVPSITRQQMEKCRAEIKSTHDDTYGVPSLEELGFPRDNPGAAVWPGGETEALARLDRHL 230 Query: 224 KEKVYYYVEQRDIPAIQGTS------QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSG 277 + K + V + P + S LSPYL G LS R + RL+E + + K Sbjct: 231 ERKAW--VAHYERPRMNANSLLASPTGLSPYLRFGCLSCRLFYYRLRELYQKV-KKNSPP 287 Query: 278 AFSWLNELIWREFYRHLMAFYPSV--CMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPI 335 S +L+WREF+ P G P +I W+K+ L W +G TGFP Sbjct: 288 PLSLFGQLLWREFFYTAATNNPKFDQMEGNPI---CVQIPWDKNPEALAKWTEGKTGFPW 344 Query: 336 IDAAMRQLNTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQW 394 IDA M QL GW+H+ R A FL + DL W G + F LLD D + N G W W Sbjct: 345 IDAIMTQLRQEGWIHHLARHAVACFLTRGDLWNSWECGVKVFDELLLDADFSVNAGSWMW 404 Query: 395 AASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLD------ 448 + + +F + P G+R DP G ++R +LP L P++YI+ P + + Sbjct: 405 LSCSAFFQQ-FFHCYCPVGFGRRTDPSGDYVRRYLPVLKGYPSRYIYEPWNAPESVQKEA 463 Query: 449 KNDLSLNYPLPIVDHKKA 466 K + ++YP P+V+H +A Sbjct: 464 KCIVGVDYPKPVVNHAEA 481 >gi|125986217|ref|XP_001356872.1| GA15376 [Drosophila pseudoobscura pseudoobscura] gi|54645198|gb|EAL33938.1| GA15376 [Drosophila pseudoobscura pseudoobscura] Length = 533 Score = 139 bits (349), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 94/285 (32%), Positives = 143/285 (50%), Gaps = 18/285 (6%) Query: 208 FPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQG----TSQLSPYLSIGVLSPRQCWNRL 263 FP GE L +++ +++++ ++ A T+ LSPYL G LS R +L Sbjct: 220 FPGGETEGLRRMKESLRDELWVARFEKPNTAPNSLEPSTTVLSPYLKFGCLSARLFHQQL 279 Query: 264 KEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSV--CMGKPFIPWTEKIEWNKDSH 321 K + K S + +L+WREFY + A P+ +G + +I W + + Sbjct: 280 KA-ILKRQSKHSQPPVSLIGQLLWREFYYTVAAAEPNFDRMLGNVY---CLQIPWQEQAD 335 Query: 322 LLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQL 380 L+AW G TG+P IDA MRQL GW+H+ R A FL + DL + W G+ F L Sbjct: 336 HLEAWTHGRTGYPFIDAIMRQLRQEGWIHHLARHAVACFLTRGDLWISWEEGQRVFEQLL 395 Query: 381 LDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYI 440 LD D A N G W W +++ YFR+++P GK+ DPQG +IR ++PEL P I Sbjct: 396 LDQDWALNAGNWMWLSASAFFH-QYFRVYSPVAFGKKTDPQGHYIRKYVPELAKYPNGCI 454 Query: 441 HAP--HSWLDKND----LSLNYPLPIVDHKKACHHTLNQYYAAKK 479 + P + D+ + L ++YP IV H+ + + AA K Sbjct: 455 YEPWKATLADQREYGCVLGVDYPHRIVKHELVHKENIKRMSAAYK 499 >gi|313228844|emb|CBY17995.1| unnamed protein product [Oikopleura dioica] Length = 525 Score = 138 bits (348), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 133/522 (25%), Positives = 230/522 (44%), Gaps = 73/522 (13%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHG-ISARQSHFIYASLLQVQ 69 L W R LR+ DN+ L AA +S+A V V+ E R + I + F+ SL + Sbjct: 11 LHWFRKGLRLHDNRPLLAAIRSSEA-VYCVYCLDLEWMRANERIGNNRIRFLLESLTDLD 69 Query: 70 KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD-KLLEKRLQ 128 ++L + G + N +I+ ++C + +T++ Y R E+ + + ++LE+ + Sbjct: 70 ENLRKIGTRL-FVLRGNARTAIK---TFCREYEITQMTYMRDAEVFYRQLEAEILEEVNR 125 Query: 129 HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAI-----R 183 ++ +S L P I++ + ++I +L D+ +LP P + + Sbjct: 126 REIVTRSDHGHTLYDPQEIIDANEGQVPLSLDEFYSVIPSL---DVPALPAPTVTAEMFK 182 Query: 184 LTGPVTPSNIPRFFDYPFQA--------IDPMFPIGEQNALHILRKFCKEKVYYYVEQR- 234 N + P A +P GE AL L+ K+ Y Q Sbjct: 183 SCSVRIEENHQAIYGVPTMASLGLECPRAHTRWPGGETVALERLKYKMKQNTLYEFNQGP 242 Query: 235 ----------DIPAIQG--------TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKS 276 +IP T+ LSPY+++G +SPR W+ K + + Sbjct: 243 STSKAANHEYEIPGTSEPWFETQPETTGLSPYINLGSISPRTFWHGAKNCSEKMRTTVQG 302 Query: 277 GAFSWLNELIWREFYRHLMAFYPS---------VCMGKPFIPWTEKIEWNKDSHLLQAWK 327 ++I+REF+ + +A+ + +C I W++ + + ++ +K Sbjct: 303 -------QMIYREFF-YTVAYTVNNFTRIEGNRICKD---IKWSDPKTNERAAEWIEKFK 351 Query: 328 QGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFL-VKDLLVDWRIGEEYFMSQLLDGDLA 386 QG TG+P IDAA+RQ+ T GW+ + R ASFL V + W +G++ F LLD D A Sbjct: 352 QGMTGYPWIDAAVRQMKTEGWITHISRFSLASFLTVGQMWCSWEVGQQLFEEFLLDADYA 411 Query: 387 SNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSW 446 N G + W + + + +P +++D G+FIR + PEL N+PTQYI AP W Sbjct: 412 LNAGNFLWVTGSAFANQIPVKALDPVKLARKWDTHGSFIRRYCPELKNLPTQYICAP--W 469 Query: 447 LDKNDLSL--------NYPLPIVDHKKACHHTLNQYYAAKKQ 480 D+ L +YP P+++ LN+ A +Q Sbjct: 470 KAPQDVQLKARAIIGVDYPAPMLNAATMRIQNLNKIKAHNQQ 511 >gi|225875100|emb|CAQ86665.1| cryptochrome [Euphausia superba] Length = 545 Score = 138 bits (348), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 88/238 (36%), Positives = 117/238 (49%), Gaps = 15/238 (6%) Query: 243 SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSV- 301 + LSPYL G LS R+ + L + + IK S +L+WREFY P Sbjct: 253 TGLSPYLRFGCLSARRFFAELNDLYRK--IKKSPAPLSLHGQLLWREFYYTAATNNPKFD 310 Query: 302 -CMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASF 360 G P +I W+K++ L W G TGFP IDA M QL GW+HN R A F Sbjct: 311 HMEGNPIC---VQIPWDKNAEALAKWAHGRTGFPWIDAIMSQLRKEGWIHNVARHAVACF 367 Query: 361 LVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFD 419 L + DL V W G + F LLD D + N G W W S + +F + P G++ D Sbjct: 368 LTRGDLWVSWEEGMKVFDELLLDADWSVNAGSWMW-LSCSSFFQQFFHCYCPVRYGRKAD 426 Query: 420 PQGTFIRHWLPELNNVPTQYIHAPHSWLD------KNDLSLNYPLPIVDHKKACHHTL 471 P G +IR +LP L N PT+YIH P + + K + +YP+P+VDH K L Sbjct: 427 PNGDYIRTYLPVLKNFPTKYIHEPWTAPENVQKQSKCVIGRDYPMPMVDHVKQSQANL 484 >gi|153831247|ref|ZP_01983914.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae 623-39] gi|148873267|gb|EDL71402.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae 623-39] Length = 114 Score = 138 bits (348), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 67/115 (58%), Positives = 81/115 (70%), Gaps = 2/115 (1%) Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423 DL +DWR GE YFMS+L+DGD A+NNGGWQW ASTG D PYFRIFNP QG++FDP G Sbjct: 1 DLHIDWRWGERYFMSRLIDGDYAANNGGWQWCASTGCDGQPYFRIFNPVSQGEKFDPNGD 60 Query: 424 FIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478 FIR W+PEL +V + YIH P ++ N S+ YP +VDHK+ TL Y AK Sbjct: 61 FIRRWVPELRSVSSAYIHQPWTYPAVN--SVLYPARLVDHKQEREVTLRLYKTAK 113 >gi|297582490|ref|YP_003698270.1| deoxyribodipyrimidine photo-lyase [Bacillus selenitireducens MLS10] gi|297140947|gb|ADH97704.1| Deoxyribodipyrimidine photo-lyase [Bacillus selenitireducens MLS10] Length = 512 Score = 138 bits (348), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 130/475 (27%), Positives = 201/475 (42%), Gaps = 47/475 (9%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 V++VWL+ DLRI D++ L A + V+ +F+ W +S R F+ SL ++ Sbjct: 2 VNVVWLKRDLRIFDHRPLKEAAEQGE--VLPLFVWEASVWAHGDLSVRHRDFVLQSLAEL 59 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDS-------YCLQQRVTKLFYNRQYEI-NEVRRD 120 + L Q+G Y D + L++ + ++ T L + R + N ++ Sbjct: 60 DRRLDQRGARL-YTAVGEVIDVLTRLEADLGPFQLFAHEENGTPLTFERDIAVRNWMKAR 118 Query: 121 KLLEKRLQHRVIC---KSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSL 177 K H + KS DD K Y + A + +A Sbjct: 119 GCTMKEWPHFGVTRGLKSRDD---------------FQKGYERYVNAPVVPAPEAVRGIR 163 Query: 178 PVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKE--KVYYYVEQRD 235 PA G P I P AI GE+ A +L+ F +E K Y + Sbjct: 164 HAPAWLTKGAGEPGGIA----LPGTAITRGQQGGERLAHGVLKGFLEERFKAYQVRISKP 219 Query: 236 IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDL---LIKPKSGAFSWLNELIWREFYR 292 + + S+LSPYL+ G LS R + +L K + AF L+ L W + Sbjct: 220 FASAESCSRLSPYLAWGNLSVRYTYQETVARLGELGSGFHKKQLSAF--LSRLHWHCHFI 277 Query: 293 HLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNR 352 + P + + P + + Q W G TG P+IDAAMR L+ GW++ R Sbjct: 278 QRLEDEPEIAH-RTMNPVFDTVRQTWSEEAYQRWLHGRTGIPLIDAAMRCLHETGWLNFR 336 Query: 353 LRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQW-AASTGNDSVPYFRIFNP 411 R + SF+ L++DWR E LD + + Q A +TG +++ RI+NP Sbjct: 337 SRAMVISFVCNTLMLDWRRPAEDLSRLFLDYEPGIHYSQVQMQAGTTGFNTI---RIYNP 393 Query: 412 TIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKA 466 QG+ DP G F+R ++PEL+ V +IH P W YP+P+VD KA Sbjct: 394 VKQGQEHDPSGAFVRRFVPELSAVSDAFIHEP--WKLPAGPPKGYPMPMVDVAKA 446 >gi|195353691|ref|XP_002043337.1| GM26830 [Drosophila sechellia] gi|194127451|gb|EDW49494.1| GM26830 [Drosophila sechellia] Length = 542 Score = 138 bits (348), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 129/478 (26%), Positives = 213/478 (44%), Gaps = 52/478 (10%) Query: 8 SVHLVWLRNDLRITDNKALYAACHNSDA--KVIAVFIATPEQWRQHGISARQSHFIYASL 65 +++W R+ LR+ DN AL AA + D +I VFI E + + F+ SL Sbjct: 5 GANVIWFRHGLRLHDNPALLAALADKDQGIAIIPVFIFDGESAGTKNVGYNRMRFLLDSL 64 Query: 66 L----QVQKSLSQKG--IVFQYHQCSNFDDSIEWLDSY--CLQQRVTKLFYNRQYEINEV 117 Q+Q + +G +VF+ F E L + C++Q ++ R I + Sbjct: 65 QDIDDQLQAATDGRGRLLVFEGEPAYIFRRLHEQLRLHRICIEQDCEPIWNERDESIRSL 124 Query: 118 RRDKLLEKRLQHRVICKSFDDSVLLPP-GSILNHALQMYK-----VYTPFRKALIQNLVQ 171 R+ L +V +D +++ G I QM+ + P R L Sbjct: 125 CRE--LSIDFVEKVSHTLWDPQLVIETNGGIPPLTYQMFLHTVQIIGLPPRPTADARLDD 182 Query: 172 ADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPI----GEQNALHILRKFCKEKV 227 A L R P F+ + + I GE AL +L + K + Sbjct: 183 ATFVELDPEFCRSLKLFDQLPTPEHFNVYGDNMGFLAKINWRGGETQALLLLDERLKVEQ 242 Query: 228 Y-----YYVEQRDIPAIQGTSQ-LSPYLSIGVLSPRQCWNRLKEEFVDLLIKP------K 275 + +Y+ + +P I + + +S +L G LS R+ + + + F ++ ++ Sbjct: 243 HAFERGFYLPNQALPNIHDSPKSMSAHLRFGCLSVRRFYWSVHDLFKNVQLRACVRGVQM 302 Query: 276 SGAFSWLNELIWREFYRHLMAFYPS--------VCMGKPFIPWTEKIEWNKDSHLLQAWK 327 +G +LIWRE++ + P+ +C+ IPW + N+D LLQ W+ Sbjct: 303 TGGAHITGQLIWREYFYTMSVNNPNYDRMEGNEICLS---IPWAKP---NED--LLQRWR 354 Query: 328 QGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLA 386 G TGFP+ID AMRQL GW+H+ LR A+FL + L W G ++F+ LLD D + Sbjct: 355 LGQTGFPLIDGAMRQLLAEGWLHHTLRNTVATFLTRGGLWQSWEHGLQHFLKYLLDADWS 414 Query: 387 SNNGGWQWAASTGNDSVPYFRIFN-PTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAP 443 G W W +S+ + + + P KR DP GT+I+ ++PEL NVP +++H P Sbjct: 415 VCAGNWMWVSSSAFERLLDSSLVTCPVALAKRLDPDGTYIKQYVPELMNVPKEFVHEP 472 >gi|145881069|gb|ABP97098.1| cryptochrome CRY1 [Acropora millepora] Length = 552 Score = 138 bits (348), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 138/500 (27%), Positives = 203/500 (40%), Gaps = 64/500 (12%) Query: 13 WLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQKSL 72 W+R DLR+ DN +L A SD V +++ + GI F+ SL V SL Sbjct: 32 WVRKDLRLHDNPSLLEAVKGSDT-VRIIYVLDTKVDHATGIGLNLWRFLLQSLEDVDDSL 90 Query: 73 SQ---KGIVFQYHQCSNFDDSI-EWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128 + + V + F EW S+ L + E +D + Q Sbjct: 91 RKLNSRLFVVRGQPADVFPRLFREWKTSF--------LTFEEDSEPFGREKDAAIRLLAQ 142 Query: 129 HRVICKSFDDS-VLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187 + + S L P I+ H + A++++L + L G Sbjct: 143 ESGVEVAVGRSHTLYDPQLIIKHNSGTAPLTYKKFLAIVRSLGNPQHPCATLDVHLLGGC 202 Query: 188 VTPSN--------IPRFFDYPFQAIDPMFPI---GEQNALHILRKFCKEKVYYYVEQRDI 236 TP + +P + I GE AL L + + K + + + Sbjct: 203 STPVSEDHEEKFGVPSLKELGLDVAKLSTEIWHGGETEALIRLDRHLERKAW--IASFEK 260 Query: 237 PAIQGTS------QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREF 290 P + S LSPYL G LSPR ++RL E + +K K S +L+WREF Sbjct: 261 PKVTPNSLFPSPTGLSPYLRFGCLSPRLFYHRLSELYRK--VKCKDPPISLYGQLLWREF 318 Query: 291 YRHLMAFYPS--------VCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQ 342 + + A P+ VC+ IPWT EW L+ W+QG TGFP IDA M Q Sbjct: 319 FFTVAANNPNFDQMDENPVCLQ---IPWTANPEW------LKKWEQGQTGFPWIDAIMIQ 369 Query: 343 LNTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGND 401 L G +H+ R FL + DL + W G + F LLD + + N G W W + + Sbjct: 370 LKQEGXIHHLARHAVGCFLTRGDLWISWEEGMKVFERWLLDAEWSLNAGNWMWLSCSAFF 429 Query: 402 SVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND--------LS 453 +F P G++ DP G ++R +LP L P +YIHAP W + + Sbjct: 430 Q-QFFNCICPVGFGRKLDPNGDYVRKYLPVLKGFPAKYIHAP--WTAPENVQRAARCIIG 486 Query: 454 LNYPLPIVDHKKACHHTLNQ 473 +YP PIVDH K L + Sbjct: 487 KDYPRPIVDHHKVSTANLEK 506 >gi|223944515|gb|ACN26341.1| unknown [Zea mays] Length = 470 Score = 138 bits (348), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 87/231 (37%), Positives = 130/231 (56%), Gaps = 11/231 (4%) Query: 242 TSQLSPYLSIGVLSPRQCWNRLKEEFV----DLLIKPKSGAFSWLNELIWREFYRHLMAF 297 TS LSPYL G LS R+ +++++ + + D + +L + RE+ R+L Sbjct: 15 TSLLSPYLHFGELSVRKVFHQVRMKQLMWSNDGNHAGEESCTLFLRSIGLREYSRYLTFN 74 Query: 298 YPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMIT 357 +P KP + W + + W+QG TG+P++DA MR+L GW+H+R+R++ Sbjct: 75 HP-CSHEKPLLSHLRFFPWVVNEVYFKVWRQGRTGYPLVDAGMRELWATGWVHDRIRVVV 133 Query: 358 ASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKR 417 +SF VK L + WR G +YF LLD DL S+ GWQ+ + + D RI NP +G + Sbjct: 134 SSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGSLPDGRELDRIDNPQFEGYK 193 Query: 418 FDPQGTFIRHWLPELNNVPTQYIH----APHSWLDKNDLSL--NYPLPIVD 462 FDP G ++R WLPEL +PT++IH AP S L + L NYP PIV+ Sbjct: 194 FDPHGEYVRRWLPELARLPTEWIHHPWDAPESVLQAAGVELGSNYPRPIVE 244 >gi|193211374|ref|NP_001123208.1| cryptochrome-2 [Ovis aries] gi|156763811|gb|ABS44876.1| cryptochrome 2 [Ovis aries] Length = 596 Score = 138 bits (348), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 140/502 (27%), Positives = 213/502 (42%), Gaps = 61/502 (12%) Query: 2 KATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFI 61 + A SVH W R LR+ DN AL AA + V V+I P + + F+ Sbjct: 21 RGDGASSVH--WFRKGLRLHDNPALLAAVRGAHC-VRCVYILDPWFAASSSVGINRWRFL 77 Query: 62 YASLLQVQKSLSQ---KGIVFQYHQCSNFDDSI-EWLDSYCLQQRVTKLFYNRQYEINEV 117 SL + +SL + + V + F EW VT+L + E Sbjct: 78 LQSLEDLDRSLRKLNSRLFVVRGQPADVFPRLFKEW--------GVTRLTFEYDSEPFGK 129 Query: 118 RRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLV-QADLRS 176 RD + K + + ++S L L+ +++ P Q ++ + +L Sbjct: 130 ERDAAIMKMAKEAGVEVVTENSHTL---YDLDKIIELNGQKPPLTYKRFQAIISRMELPR 186 Query: 177 LPVPAIR------LTGPVTPS-----NIPRF--FDYPFQAIDP-MFPIGEQNALHILRKF 222 PV ++ + S +P +P + + P ++ GE AL L K Sbjct: 187 KPVGSVTSQQMEGCQAEIQESHDETYGVPSLEELGFPTEGLGPAVWRGGETEALARLDKH 246 Query: 223 CKEKVYYYVEQRDIPAIQGTS------QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKS 276 + K + +R P + +S LSPYL G LS R + RL DL K K Sbjct: 247 LERKAWVASYER--PRMNASSLLASPTGLSPYLRFGCLSCRLFYYRL----WDLYRKVKR 300 Query: 277 GA---FSWLNELIWREFYRHLMAFYPSV--CMGKPFIPWTEKIEWNKDSHLLQAWKQGYT 331 + S +L+WREF+ P G P +I W+++ L W +G T Sbjct: 301 NSTPPLSLFGQLLWREFFYTAATNNPRFDRMEGNPI---CIQIPWDRNPEALAKWAEGKT 357 Query: 332 GFPIIDAAMRQLNTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNG 390 GFP IDA M QL GW+H+ R A FL + DL V W G F LLD D + N G Sbjct: 358 GFPWIDAIMAQLRQEGWIHHLARHAVACFLTRGDLWVSWESGVRVFDELLLDADFSVNAG 417 Query: 391 GWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLD-- 448 W W + + +F + P G+R DP G +IR +LP+L P++YI+ P + + Sbjct: 418 SWMWLSCSAFFQQ-FFHCYCPVGFGRRTDPSGDYIRRYLPKLKGFPSRYIYEPWNAPESI 476 Query: 449 ----KNDLSLNYPLPIVDHKKA 466 K + ++YP PIV+H +A Sbjct: 477 QKAAKCIIGVDYPRPIVNHAEA 498 >gi|133754342|gb|ABO38435.1| cryptochrome 2 [Antheraea pernyi] Length = 788 Score = 138 bits (348), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 110/343 (32%), Positives = 155/343 (45%), Gaps = 37/343 (10%) Query: 163 KALIQNLVQADLRSLPVPAIRLTGPVTPSNI--------PRFFDYPFQAID---PMFPIG 211 +ALI ++ P+ L G TP ++ P + F+ D PM+ G Sbjct: 185 QALIASMPPPQPAEAPISIETLNGAKTPVSVDHDDRFGVPTLEELGFETEDLKPPMWMGG 244 Query: 212 EQNALHILRKFCKEK--VYYYVEQRDIPAIQGTSQ--LSPYLSIGVLSPRQCWNRLKEEF 267 E AL L + + K V + + P SQ LSPYL G LS R + +L E + Sbjct: 245 ESEALARLDRHLERKAWVASFGRPKMTPQSLLASQTGLSPYLRFGCLSTRLFYYQLTELY 304 Query: 268 VDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSV--CMGKPFIPWTEKIEWNKDSHLLQA 325 IK S +++WREF+ P+ G P +I W K+ L Sbjct: 305 KK--IKRVRPPLSLHGQILWREFFYCAATRNPNFDRMEGNPIC---VQIPWEKNQEALSK 359 Query: 326 WKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGD 384 W G TG+P IDA M QL GW+H+ R A FL + DL + W G + F +LD D Sbjct: 360 WANGQTGYPWIDAIMIQLREEGWIHHLARHAVACFLTRGDLWISWEEGMKVFDELMLDAD 419 Query: 385 LASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPH 444 + N G W W S + +F + P G++ DP G FIR ++P L N+PT+YIH P Sbjct: 420 WSVNAGMWMW-LSCSSFFQQFFHCYCPVRFGRKTDPNGDFIRKYIPALKNMPTRYIHEP- 477 Query: 445 SWLDKND--------LSLNYPLPIVDHKKACHHTLN---QYYA 476 W+ + +YPLP++DH KA L Q YA Sbjct: 478 -WVAPESVQQAAQCVVGCDYPLPMLDHTKASQINLERIKQVYA 519 >gi|50510573|dbj|BAD32272.1| mKIAA0658 protein [Mus musculus] Length = 584 Score = 138 bits (347), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 143/504 (28%), Positives = 210/504 (41%), Gaps = 65/504 (12%) Query: 1 MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHF 60 M A A SVH W R LR+ DN AL AA + V V+I P + + F Sbjct: 8 MGADGASSVH--WFRKGLRLHDNPALLAAVRGARC-VRCVYILDPWFAASSSVGINRWRF 64 Query: 61 IYASLLQVQKSLSQ---KGIVFQYHQCSNFDDSI-EWLDSYCLQQRVTKLFYNRQYEINE 116 + SL + SL + + V + F EW VT+L + E Sbjct: 65 LLQSLEDLDTSLRKLNSRLFVVRGQPADVFPRLFKEW--------GVTRLTFEYDSEPFG 116 Query: 117 VRRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRS 176 RD + K + + ++S L L+ +++ P Q L+ Sbjct: 117 KERDAAIMKMAKEAGVEVVTENSHTL---YDLDRIIELNGQKPPLTYKRFQALISR--ME 171 Query: 177 LPV-PAIRLTGPVTPS-------------NIPRF--FDYPFQAIDP-MFPIGEQNALHIL 219 LP PA+ ++ S +P +P + + P ++ GE AL L Sbjct: 172 LPKKPAVAVSSQQMESCRAEIQENHDDTYGVPSLEELGFPTEGLGPAVWQGGETEALARL 231 Query: 220 RKFCKEKVYYYVEQRDIPAIQGTS------QLSPYLSIGVLSPRQCWNRLKEEFVDLLIK 273 K + K + V + P + S LSPYL G LS R + RL DL K Sbjct: 232 DKHLERKAW--VANYERPRMNANSLLASPTGLSPYLRFGCLSCRLFYYRL----WDLYKK 285 Query: 274 PKSGA---FSWLNELIWREFYRHLMAFYPSV--CMGKPFIPWTEKIEWNKDSHLLQAWKQ 328 K + S +L+WREF+ P G P +I W+++ L W + Sbjct: 286 VKRNSTPPLSLFGQLLWREFFYTAATNNPRFDRMEGNPIC---IQIPWDRNPEALAKWAE 342 Query: 329 GYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLAS 387 G TGFP IDA M QL GW+H+ R A FL + DL V W G F LLD D + Sbjct: 343 GKTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWVSWESGVRVFDELLLDADFSV 402 Query: 388 NNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWL 447 N G W W + + +F + P G+R DP G +IR +LP+L P++YI+ P + Sbjct: 403 NAGSWMWLSCSAFFQQ-FFHCYCPVGFGRRTDPSGDYIRRYLPKLKGFPSRYIYEPWNAP 461 Query: 448 D------KNDLSLNYPLPIVDHKK 465 + K + ++YP PIV+H + Sbjct: 462 ESVQKAAKCIIGVDYPRPIVNHAE 485 >gi|27312016|ref|NP_034093.1| cryptochrome-2 [Mus musculus] gi|164519087|ref|NP_001106804.1| cryptochrome-2 [Mus musculus] gi|81882058|sp|Q9R194|CRY2_MOUSE RecName: Full=Cryptochrome-2 gi|5670009|gb|AAD46561.1|AF156987_1 cryptochrome 2 [Mus musculus] gi|26334673|dbj|BAC31037.1| unnamed protein product [Mus musculus] gi|45219826|gb|AAH66799.1| Cryptochrome 2 (photolyase-like) [Mus musculus] gi|56078856|gb|AAH54794.1| Cryptochrome 2 (photolyase-like) [Mus musculus] gi|74227568|dbj|BAE21836.1| unnamed protein product [Mus musculus] gi|123212126|emb|CAM20614.1| cryptochrome 2 (photolyase-like) [Mus musculus] gi|123220429|emb|CAM15994.1| cryptochrome 2 (photolyase-like) [Mus musculus] gi|148695658|gb|EDL27605.1| cryptochrome 2 (photolyase-like), isoform CRA_a [Mus musculus] gi|148695659|gb|EDL27606.1| cryptochrome 2 (photolyase-like), isoform CRA_a [Mus musculus] Length = 592 Score = 138 bits (347), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 143/504 (28%), Positives = 210/504 (41%), Gaps = 65/504 (12%) Query: 1 MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHF 60 M A A SVH W R LR+ DN AL AA + V V+I P + + F Sbjct: 16 MGADGASSVH--WFRKGLRLHDNPALLAAVRGARC-VRCVYILDPWFAASSSVGINRWRF 72 Query: 61 IYASLLQVQKSLSQ---KGIVFQYHQCSNFDDSI-EWLDSYCLQQRVTKLFYNRQYEINE 116 + SL + SL + + V + F EW VT+L + E Sbjct: 73 LLQSLEDLDTSLRKLNSRLFVVRGQPADVFPRLFKEW--------GVTRLTFEYDSEPFG 124 Query: 117 VRRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRS 176 RD + K + + ++S L L+ +++ P Q L+ Sbjct: 125 KERDAAIMKMAKEAGVEVVTENSHTL---YDLDRIIELNGQKPPLTYKRFQALISR--ME 179 Query: 177 LPV-PAIRLTGPVTPS-------------NIPRF--FDYPFQAIDP-MFPIGEQNALHIL 219 LP PA+ ++ S +P +P + + P ++ GE AL L Sbjct: 180 LPKKPAVAVSSQQMESCRAEIQENHDDTYGVPSLEELGFPTEGLGPAVWQGGETEALARL 239 Query: 220 RKFCKEKVYYYVEQRDIPAIQGTS------QLSPYLSIGVLSPRQCWNRLKEEFVDLLIK 273 K + K + V + P + S LSPYL G LS R + RL DL K Sbjct: 240 DKHLERKAW--VANYERPRMNANSLLASPTGLSPYLRFGCLSCRLFYYRL----WDLYKK 293 Query: 274 PKSGA---FSWLNELIWREFYRHLMAFYPSV--CMGKPFIPWTEKIEWNKDSHLLQAWKQ 328 K + S +L+WREF+ P G P +I W+++ L W + Sbjct: 294 VKRNSTPPLSLFGQLLWREFFYTAATNNPRFDRMEGNPIC---IQIPWDRNPEALAKWAE 350 Query: 329 GYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLAS 387 G TGFP IDA M QL GW+H+ R A FL + DL V W G F LLD D + Sbjct: 351 GKTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWVSWESGVRVFDELLLDADFSV 410 Query: 388 NNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWL 447 N G W W + + +F + P G+R DP G +IR +LP+L P++YI+ P + Sbjct: 411 NAGSWMWLSCSAFFQQ-FFHCYCPVGFGRRTDPSGDYIRRYLPKLKGFPSRYIYEPWNAP 469 Query: 448 D------KNDLSLNYPLPIVDHKK 465 + K + ++YP PIV+H + Sbjct: 470 ESVQKAAKCIIGVDYPRPIVNHAE 493 >gi|149375532|ref|ZP_01893302.1| Deoxyribodipyrimidine photolyase [Marinobacter algicola DG893] gi|149360237|gb|EDM48691.1| Deoxyribodipyrimidine photolyase [Marinobacter algicola DG893] Length = 440 Score = 138 bits (347), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 126/440 (28%), Positives = 202/440 (45%), Gaps = 41/440 (9%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAV-----FIATPEQWRQHGISARQSHFIYA 63 V L W DLR+ DN AL AA + + V F+ P Q R + A + F++ Sbjct: 2 VSLYWFTRDLRLHDNAALLAASKSDMLLCVYVVDPRWFVPGPFQCR--ALGAHRWRFLWQ 59 Query: 64 SLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLL 123 SL+ +++ L G F + + + ++ +R E + K L Sbjct: 60 SLISLERDLRPLGQRLHI----AFGKPEQVIPDLVHDHNINRVIRSRLPGTREAVQWKSL 115 Query: 124 EKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKAL--IQNLVQADLRSLPVPA 181 +L V + F+ L GS+ + ++ FRK + N LR + A Sbjct: 116 RDKLPQTVF-QQFETLSLFTEGSLPMDLSHLPDTFSQFRKQVEKTGNRNSERLRIRTLTA 174 Query: 182 IRLTGPVTPSNIPRFFDYPFQAI-DPMFPIG----EQNALHILRK--FCKEKVYYYVEQR 234 + P P P+ AI +P PIG E L L F ++ +Y E R Sbjct: 175 L----PPAPG-YPQDNRGECPAIAEPRHPIGFRGGESAGLERLNDYLFVNHRIAHYKETR 229 Query: 235 D-IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRH 293 + + +S+LSP+L+ G LS R+ + + + + + +K +S + W EL+WRE++ Sbjct: 230 NALDEADASSRLSPWLANGALSAREVADTISD-YENQHVKNESTYWLWF-ELLWREYF-- 285 Query: 294 LMAFYPSVCMGKPFIPWTEKIEWNKDS-----HLLQAWKQGYTGFPIIDAAMRQLNTIGW 348 ++ ++ G + ++ K S H +AW G T +P+++AAM QL G+ Sbjct: 286 ---YWYALKHGASLFH-RDGVQQKKRSTSFYPHRFKAWCAGSTEYPLVNAAMNQLRETGY 341 Query: 349 MHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRI 408 + NR R I AS LV +L +DWR G +F QL+D D+ASN G WQ+ A G D R Sbjct: 342 ISNRSRQIVASCLVNELELDWRYGAAWFEEQLVDYDVASNYGNWQYQAGVGADPKGP-RH 400 Query: 409 FNPTIQGKRFDPQGTFIRHW 428 FN Q ++FDP G F++ W Sbjct: 401 FNLEKQARQFDPDGDFVKRW 420 >gi|8698592|dbj|BAA96850.1| cryptochrome3 [Danio rerio] Length = 598 Score = 138 bits (347), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 136/490 (27%), Positives = 208/490 (42%), Gaps = 49/490 (10%) Query: 8 SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67 SVH W R LR+ DN AL A + +D V V+I P + + F+ SL Sbjct: 5 SVH--WFRKGLRLHDNPALQEALNGADT-VRCVYILDPWFAGSANVGVNRWRFLLESLED 61 Query: 68 VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127 + SL + + D + VT+L + E RD + K Sbjct: 62 LDTSLRKLNSRLSVVRGQPTDVFPRLFKEW----NVTRLTFEYDSEPYGKERDAAIIKMA 117 Query: 128 QHRVICKSFDDS-VLLPPGSILNHALQMYKVYTPFRKALIQNLV-QADLRSLPVPAI--- 182 Q + +S L P I+ +M P Q +V + +L P+P I Sbjct: 118 QEYGVETVVRNSHTLYNPDRII----EMNNHSPPLTFKRFQAIVNRLELPRKPLPTITQE 173 Query: 183 ---RLTGPVTPSN-----IPRFFDYPFQAIDPMFPI---GEQNALHILRKFCKEKVYYYV 231 R ++ ++ +P + F+ + GE AL L K K + V Sbjct: 174 QMARCRTQISDNHDEHYGVPSLEELGFRTQGDSLHVWKGGETEALERLNKHLDRKAW--V 231 Query: 232 EQRDIPAIQGTS------QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNEL 285 + P I G S LSPYL G LS R + L++ F+ L + S S +L Sbjct: 232 ANFERPRISGQSLFPSPTGLSPYLRFGCLSCRVFYYNLRDLFMKLRRR-SSPPLSLFGQL 290 Query: 286 IWREFYRHLMAFYPSV--CMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQL 343 +WREF+ P+ G P +I W+ + L W +G TGFP IDA M QL Sbjct: 291 LWREFFYTAGTNNPNFDHMEGNPIC---VQIPWDHNPEALAKWAEGRTGFPWIDAIMTQL 347 Query: 344 NTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDS 402 GW+H+ R A FL + DL + W G + F LLD D + N G W W + + Sbjct: 348 RQEGWIHHLARHAVACFLTRGDLWISWESGMKVFEELLLDADWSVNAGSWMWLSCSAFFQ 407 Query: 403 VPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIH----APHSWLDKND--LSLNY 456 +F + P G+R DP G +IR ++P+L + P +YI+ AP S + + ++Y Sbjct: 408 Q-FFHCYCPVGFGRRTDPSGDYIRRYIPKLKDYPNRYIYEPWNAPESVQKAANCIVGVDY 466 Query: 457 PLPIVDHKKA 466 P P+++H ++ Sbjct: 467 PKPMINHAES 476 >gi|149022681|gb|EDL79575.1| cryptochrome 2 (photolyase-like), isoform CRA_a [Rattus norvegicus] gi|149022682|gb|EDL79576.1| cryptochrome 2 (photolyase-like), isoform CRA_a [Rattus norvegicus] gi|183985822|gb|AAI66416.1| Cryptochrome 2 (photolyase-like) [Rattus norvegicus] Length = 594 Score = 138 bits (347), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 142/502 (28%), Positives = 211/502 (42%), Gaps = 61/502 (12%) Query: 1 MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHF 60 M A A SVH W R LR+ DN AL AA + V V+I P + + F Sbjct: 16 MGADGASSVH--WFRKGLRLHDNPALLAAVRGARC-VRCVYILDPWFAASSSVGINRWRF 72 Query: 61 IYASLLQVQKSLSQ---KGIVFQYHQCSNFDDSI-EWLDSYCLQQRVTKLFYNRQYEINE 116 + SL + SL + + V + F EW VT+L + E Sbjct: 73 LLQSLEDLDTSLRKLNSRLFVVRGQPADVFPRLFKEW--------GVTRLTFEYDSEPFG 124 Query: 117 VRRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLV-QADLR 175 RD + K + + ++S L L+ +++ P Q L+ + +L Sbjct: 125 KERDAAIMKMAKEAGVEVVTENSHTL---YDLDRIIELNGQKPPLTYKRFQALISRMELP 181 Query: 176 SLPVPAI------RLTGPVTPS-----NIPRF--FDYPFQAIDP-MFPIGEQNALHILRK 221 PV A+ + + +P +P + + P ++ GE AL L K Sbjct: 182 KKPVGAVSSQHMENCRAEIQENHDDTYGVPSLEELGFPTEGLGPAVWQGGETEALARLDK 241 Query: 222 FCKEKVYYYVEQRDIPAIQGTS------QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPK 275 + K + V + P + S LSPYL G LS R + RL DL K K Sbjct: 242 HLERKAW--VANYERPRMNANSLLASPTGLSPYLRFGCLSCRLFYYRL----WDLYRKVK 295 Query: 276 SGA---FSWLNELIWREFYRHLMAFYPSV--CMGKPFIPWTEKIEWNKDSHLLQAWKQGY 330 + S +L+WREF+ P G P +I W+++ L W +G Sbjct: 296 RNSTPPLSLFGQLLWREFFYTAATNNPRFDRMEGNPIC---IQIPWDRNPEALAKWAEGK 352 Query: 331 TGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNN 389 TGFP IDA M QL GW+H+ R A FL + DL V W G F LLD D + N Sbjct: 353 TGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWVSWESGVRVFDELLLDADFSVNA 412 Query: 390 GGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLD- 448 G W W + + +F + P G+R DP G +IR +LP+L P++YI+ P + + Sbjct: 413 GSWMWLSCSAFFQQ-FFHCYCPVGFGRRTDPSGDYIRRYLPKLKGFPSRYIYEPWNAPES 471 Query: 449 -----KNDLSLNYPLPIVDHKK 465 K + ++YP PIV+H + Sbjct: 472 VQKAAKCIIGVDYPRPIVNHAE 493 >gi|297834434|ref|XP_002885099.1| 6-4 photolyase [Arabidopsis lyrata subsp. lyrata] gi|297330939|gb|EFH61358.1| 6-4 photolyase [Arabidopsis lyrata subsp. lyrata] Length = 546 Score = 137 bits (346), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 146/527 (27%), Positives = 228/527 (43%), Gaps = 74/527 (14%) Query: 8 SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67 S L+W R LR+ DN AL A S+ + VF+ P H + + S F S Sbjct: 5 SGSLIWFRKGLRVHDNPALEFASKGSEF-MFPVFVIDP-----HYMESDPSAFSPGS--- 55 Query: 68 VQKSLSQKG---IVFQYHQCSNFDDSIEWLDSY--------------CLQQ-RVTKLFYN 109 S+ G I F + D S++ L S CLQ+ +V +L + Sbjct: 56 -----SRAGVNRIRFLLESLKDLDSSLKKLGSRLLVLKGEPGEVLFRCLQEWKVKRLCF- 109 Query: 110 RQYEINEVRRDKLLEKRLQHRV------ICKSFDDSVLLPPGSILNHALQMYKVYTPFRK 163 +Y+ + K L+ +++ + ++ P I + + Y F K Sbjct: 110 -EYDTDPYY--KALDVKVKDYASSTGVEVFSPVSHTLFNPADVIEKNGGKPPLSYQSFLK 166 Query: 164 -ALIQNLVQADL--RSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPM-----FPIGEQNA 215 A + +++L +P + G + S +P + ++ D F GE A Sbjct: 167 IAGEPSCAKSELVMSYSSLPPVGDVGNLGISEVPSLEELGYRDDDEQADWTPFRGGESEA 226 Query: 216 LHILRKFCKEK--VYYYVEQRDIPAI---QGTSQLSPYLSIGVLSPRQCWNRLKEEFVDL 270 L L K +K V + + + P+ T+ +SPYL G LS R + L+ + D+ Sbjct: 227 LKRLTKSISDKAWVANFEKPKGDPSAFLKPATTVMSPYLKFGCLSSRYFYQCLQNIYKDV 286 Query: 271 LIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGY 330 K S S L +L+WREF+ + AF ++I WN+D +L AW+ G Sbjct: 287 K-KHTSPPVSLLGQLLWREFF-YTTAFGTPNFDKMKGNRICKQIPWNEDHAMLAAWRDGK 344 Query: 331 TGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNN 389 TG+P IDA M QL GWMH+ R A FL + DL + W G + F L+D D A NN Sbjct: 345 TGYPWIDAIMVQLLKWGWMHHLARHCVACFLTRGDLFIHWEQGRDVFERLLIDSDWAINN 404 Query: 390 GGWQWAASTG-------NDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIH- 441 G W W + + V + + ++DP G +IRH+LP L ++P QYI+ Sbjct: 405 GNWMWLSCSSFFYQAIKATFVMLTLVSQCIVMVSKYDPDGKYIRHFLPVLKDMPKQYIYE 464 Query: 442 ---APHSWLDKND--LSLNYPLPIVDH---KKACHHTLNQYYAAKKQ 480 AP S K + + +YP P+V H K C + + YA K+ Sbjct: 465 PWTAPLSVQTKANCIVGKDYPKPMVLHDSASKECKRKMGEAYALNKK 511 >gi|303279002|ref|XP_003058794.1| predicted protein [Micromonas pusilla CCMP1545] gi|226459954|gb|EEH57249.1| predicted protein [Micromonas pusilla CCMP1545] Length = 527 Score = 137 bits (346), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 122/490 (24%), Positives = 201/490 (41%), Gaps = 66/490 (13%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 +VW R DLR+ DN AL+AA V+A ++ P + + +++ +L + + Sbjct: 3 VVWFRQDLRVRDNPALHAAARTGR-PVVAAYVWCPREEGRWPTGGAARVWLHHALDGLTR 61 Query: 71 SLSQK-GIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH 129 +L++ G V + S E L ++ NR YE ++ RD EK L Sbjct: 62 TLTRTYGAVLVLRDATR-TSSFEELRDVARACGAKDVYANRVYEPWKIARDDTCEKALAS 120 Query: 130 R--VICKSFDDSVLLPP---------GSILNHALQMYKVYTPFRKALIQNL--------- 169 + +SF+ VL P + N + + AL + Sbjct: 121 ECGIRYRSFNAGVLYEPWDARPDATDDACWNSGYGSVRFFLRACAALGEPPPPLPAPASM 180 Query: 170 -----VQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCK 224 V+ RS+ + ++ L D+ I + GE A LR F Sbjct: 181 RARLPVERRPRSVALESLGLAKMPRRRGGGGVIDWA-AGIRDAWTFGEDGADASLRAFLA 239 Query: 225 EKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNE 284 E + ++ +R A T+++SPY+ G LS R+ + K V A +L Sbjct: 240 EGLAHFDAKR---ADATTARISPYVRHGELSVREVYRAAKAASVGSRKSQARSAGVFLRR 296 Query: 285 LIWREFYRHLMAFYPSVCMGKPF----------IPWTEKIEWNKDS-------------- 320 L WR+ + +P + +P +PW DS Sbjct: 297 LAWRDLAYWSLWRFPHLA-DEPLRPQYASQWWAVPWDPDPRGRGDSVPRAVSIVRRRWDV 355 Query: 321 -------HLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGE 373 L+AW++G TG+P++DAAMR+L G++ N +R + A FL++ L +DWR G+ Sbjct: 356 FAPCSNDANLRAWQRGITGYPLVDAAMRELWITGYIPNYMRHVVAGFLIEYLNIDWRHGQ 415 Query: 374 EYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELN 433 +F L+D D+A WQ +G D + + +P K DP G ++R W PEL+ Sbjct: 416 LWFHDTLVDADVAIQGFMWQNGGHSGMDQWNF--VMHPVYAAKSADPDGEYVRRWCPELS 473 Query: 434 NVPTQYIHAP 443 +P Y H P Sbjct: 474 KLPRDYAHCP 483 >gi|254784878|ref|YP_003072306.1| deoxyribodipyrimidine photolyase [Teredinibacter turnerae T7901] gi|237684101|gb|ACR11365.1| deoxyribodipyrimidine photolyase [Teredinibacter turnerae T7901] Length = 447 Score = 137 bits (346), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 129/452 (28%), Positives = 205/452 (45%), Gaps = 40/452 (8%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIA-----TPEQWRQHGISARQSHFIYA 63 V + W NDLRITDN AL A + + +I V+I P ++ + + F+ Sbjct: 10 VGVFWFSNDLRITDNAALNYAAQSCET-LICVYILDPRLYAPNRYGLRSMGPMRDRFLQE 68 Query: 64 SLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSY----CLQQRVTKLFYNRQYEINEVRR 119 SL Q+ L+ G + S + + Y ++ R + +Q+ + + R Sbjct: 69 SLAQLSVDLNAVGQTLLVLRESPLQAMAQLIGKYDPGLVVRSRQAGFYEYKQWAMLQRRY 128 Query: 120 DKLLEKRLQHRVICKSFDDSVLLP-PGSILNHALQMYKVYTPFRKALIQNLVQADLRSLP 178 + K + + F+D LLP P + L K ++ FRK ++ L AD+R+L Sbjct: 129 RLISFKDIATHTL---FNDEDLLPFPLTDLP------KTFSQFRKK-VEPL--ADIRNL- 175 Query: 179 VPAIRLTGPVTPSNIPRFFDYPFQ------AIDPMFPIGEQNALHILRKFCKEKV--YYY 230 +P L P P + R D+ F+ +F G + + L+ + Y Sbjct: 176 LPVCDL--PPPPRGLKR--DHTFRRELLKHQSRSIFKGGAEAGIQQLQGYFHTTAPSEYK 231 Query: 231 VEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREF 290 + + +++LSP+L+ G LS Q L E + S+ EL+WRE+ Sbjct: 232 TVRNALDGWGNSTKLSPWLANGCLSVNQVLLALGEYEAQYSANESTYWISF--ELLWREY 289 Query: 291 YRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMH 350 ++ + + + I ++K+ +Q W +G T FP+++A M+QLN G+M Sbjct: 290 FQWSAYLHGARLFARDGINGSKKLNTFYSQRFMQ-WCEGSTPFPLVNALMKQLNVTGYMS 348 Query: 351 NRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFN 410 NR R ITAS LV +L +DWR G YF QL+D D+ASN G WQ+ A G D R FN Sbjct: 349 NRGRQITASCLVNELALDWRYGAAYFEQQLIDYDVASNWGNWQYIAGVGADPRG-GRHFN 407 Query: 411 PTIQGKRFDPQGTFIRHWLPELNNVPTQYIHA 442 Q + FDP+G FI W E + A Sbjct: 408 LDKQREIFDPEGDFIAKWGGESATAEVNSVDA 439 >gi|327259731|ref|XP_003214689.1| PREDICTED: cryptochrome-2-like [Anolis carolinensis] Length = 586 Score = 137 bits (345), Expect = 4e-30, Method: Compositional matrix adjust. Identities = 135/493 (27%), Positives = 210/493 (42%), Gaps = 55/493 (11%) Query: 8 SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67 SVH W R LR+ DN AL AA + V ++I P + + F+ SL Sbjct: 12 SVH--WFRRGLRLHDNPALQAAIRDG-GPVRCIYILDPWFAASSSVGINRWRFLLQSLED 68 Query: 68 VQKSLSQKG---IVFQYHQCSNFDDSI-EWLDSYCLQQRVTKLFYNRQYEINEVRRDKLL 123 + SL + G V + F EW RVT+L + E RD + Sbjct: 69 LDNSLRKLGSRLFVVRGQPTDVFPRLFKEW--------RVTRLTFEYDSEPFGKERDAAI 120 Query: 124 EKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLV-QADLRSLPVPAI 182 K + + ++S L L+ +++ P Q ++ + DL PV +I Sbjct: 121 VKLAKEAGVEVITENSHTL---YDLDRIIELNGHKPPLTYKRFQTIISRMDLPKKPVASI 177 Query: 183 -----RLTGPVTPSN------IPRF--FDYPFQAIDPMFPIG-EQNALHILRKFCKEKVY 228 + N +P +P +++ P +G E AL L K + K + Sbjct: 178 THQQMEMCKTEIQDNHDETYGVPSLEELGFPTESLAPAVWLGGETEALTRLDKHLERKAW 237 Query: 229 YYVEQRDIPAIQGTS------QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWL 282 V + P + S LSPYL G LS R + RL E + + + + S Sbjct: 238 --VANYERPRMNANSLLASPTGLSPYLRFGCLSCRLFYYRLWELYKKVK-RNSTPPLSLY 294 Query: 283 NELIWREFYRHLMAFYPSV--CMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAM 340 +L+WREF+ P G P +I W+++ L W +G TGFP IDA M Sbjct: 295 GQLLWREFFYTAATNNPKFDRMEGNPICI---QIPWDRNPEALAKWAEGKTGFPWIDAIM 351 Query: 341 RQLNTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTG 399 QL GW+H+ R A FL + DL + W G F LLD D + N+G W W + + Sbjct: 352 TQLRQEGWIHHLARHAVACFLTRGDLWISWESGVRVFDELLLDADFSVNSGSWMWLSCSA 411 Query: 400 NDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLD------KNDLS 453 +F + P G+R DP G ++R +LP+L P++YI+ P + + K + Sbjct: 412 FFQ-QFFHCYCPVGFGRRTDPSGDYVRRYLPKLKGFPSRYIYEPWNAPESVQKAAKCIIG 470 Query: 454 LNYPLPIVDHKKA 466 ++YP P+V+H + Sbjct: 471 VDYPKPMVNHAET 483 >gi|40254688|ref|NP_571861.2| cryptochrome-2 [Danio rerio] gi|28278010|gb|AAH46088.1| Cryptochrome 3 [Danio rerio] Length = 598 Score = 137 bits (345), Expect = 4e-30, Method: Compositional matrix adjust. Identities = 138/494 (27%), Positives = 211/494 (42%), Gaps = 57/494 (11%) Query: 8 SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67 SVH W R LR+ DN AL A + +D V V+I P + + F+ SL Sbjct: 5 SVH--WFRKGLRLHDNPALQEALNGADT-VRCVYILDPWFAGSANVGVNRWRFLLESLED 61 Query: 68 VQKSLSQ---KGIVFQYHQCSNFDDSI-EWLDSYCLQQRVTKLFYNRQYEINEVRRDKLL 123 + SL + + V + F EW VT+L + E RD + Sbjct: 62 LDTSLRKLNSRLFVVRGQPTDVFPRLFKEW--------NVTRLTFEYDSEPYGKERDAAI 113 Query: 124 EKRLQHRVICKSFDDS-VLLPPGSILNHALQMYKVYTPFRKALIQNLV-QADLRSLPVPA 181 K Q + ++ L P I+ +M P Q +V + +L P+P Sbjct: 114 IKMAQEYGVETVVRNTHTLYNPDRII----EMNNHSPPLTFKRFQAIVNRLELPRKPLPT 169 Query: 182 I------RLTGPVTPSN-----IPRFFDYPFQAIDPMFPI---GEQNALHILRKFCKEKV 227 I R ++ ++ +P + F+ + GE AL L K K Sbjct: 170 ITQEQMARCRTQISDNHDEHYGVPSLEELGFRTQGDSLHVWKGGETEALERLNKHLDRKA 229 Query: 228 YYYVEQRDIPAIQGTS------QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSW 281 + V + P I G S LSPYL G LS R + L++ F+ L + S S Sbjct: 230 W--VANFERPRISGQSLFPSPTGLSPYLRFGCLSCRVFYYNLRDLFMKLRRR-SSPPLSL 286 Query: 282 LNELIWREFYRHLMAFYPSV--CMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAA 339 +L+WREF+ P+ G P +I W+ + L W +G TGFP IDA Sbjct: 287 FGQLLWREFFYTAGTNNPNFDHMEGNPIC---VQIPWDHNPEALAKWAEGRTGFPWIDAI 343 Query: 340 MRQLNTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAAST 398 M QL GW+H+ R A FL + DL + W G + F LLD D + N G W W + + Sbjct: 344 MTQLRQEGWIHHLARHAVACFLTRGDLWISWESGMKVFEELLLDADWSVNAGSWMWLSCS 403 Query: 399 GNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIH----APHSWLDKND--L 452 +F + P G+R DP G +IR ++P+L + P +YI+ AP S + + Sbjct: 404 AFFQQ-FFHCYCPVGFGRRTDPSGDYIRRYIPKLKDYPNRYIYEPWNAPESVQKAANCIV 462 Query: 453 SLNYPLPIVDHKKA 466 ++YP P+++H ++ Sbjct: 463 GVDYPKPMINHAES 476 >gi|313212920|emb|CBY36823.1| unnamed protein product [Oikopleura dioica] Length = 476 Score = 137 bits (345), Expect = 4e-30, Method: Compositional matrix adjust. Identities = 120/465 (25%), Positives = 194/465 (41%), Gaps = 54/465 (11%) Query: 5 TAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYAS 64 T +VH W R LR+ DN+ALY A S + Q + SA ++ F+ Sbjct: 4 THRTVH--WFRKGLRLHDNEALYHAVTTSQVVFPIYILDVDWQTEKEKFSALKTRFLIEC 61 Query: 65 LLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLE 124 L + + L + G D+ + +C + +T++ + + EI RD+ + Sbjct: 62 LRDLDEGLKKYGTRLYVLT----GDATTVIKKFCKENEITQMTWMKDAEIFYRERDEEIT 117 Query: 125 KRLQHR--VICKSF-------DDSVLLPPGSILNHALQ--------MYKVYTPFRKALIQ 167 K + HR + KSF D V+ G + L M + P + Sbjct: 118 K-VVHRMEIKTKSFLGHTLYDQDEVIAKNGGKIPMDLSEFYAAIADMEQPGAPCPTVTAK 176 Query: 168 NLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKV 227 + + + L V PR P++ GE+ AL +L+ + Sbjct: 177 HFKLGSKKIIIFKKSILAFGVWGHQAPRSL--------PIYRGGERQALKVLQAKINDPT 228 Query: 228 YYYVE---QRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNE 284 + + Q + T+ LS Y + G +S R W ++ P+S + Sbjct: 229 LFTLNGFNQGVKTKLPHTTYLSAYQNYGCISTRHFWKAAEK-------LPESKTIMLRGQ 281 Query: 285 LIWREFYRHLMAFYPSVCMGKPFIPWT-----EKIEWNKDSHLLQAWKQGYTGFPIIDAA 339 +++REF FY + F +IEW K+ L AW++G TG+P IDA Sbjct: 282 IMYREF------FYVAASQVNNFTKMAGNRICRQIEWYKNEEHLSAWQEGRTGYPYIDAV 335 Query: 340 MRQLNTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAAST 398 MRQL T G++H+ R ASFL L ++W G+E F +DGD A N G W W + Sbjct: 336 MRQLVTEGFIHHLNRWAVASFLTNGQLWLNWEHGQEMFEEHQIDGDYAMNAGCWMWCTGS 395 Query: 399 GNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAP 443 + +P +R+DP+G F R + PEL N+P +Y+ +P Sbjct: 396 AFMDSISEKTLDPVKFARRWDPEGHFTRKYCPELKNMPLKYLFSP 440 >gi|261855905|ref|YP_003263188.1| deoxyribodipyrimidine photo-lyase [Halothiobacillus neapolitanus c2] gi|261836374|gb|ACX96141.1| Deoxyribodipyrimidine photo-lyase [Halothiobacillus neapolitanus c2] Length = 507 Score = 137 bits (345), Expect = 4e-30, Method: Compositional matrix adjust. Identities = 122/483 (25%), Positives = 205/483 (42%), Gaps = 35/483 (7%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 +++VW + DLR++D+ AL A V+ ++I PE W+Q +S RQ F+ A L ++ Sbjct: 1 MNVVWFKRDLRLSDHTALARAA--KQGPVLLLYILEPELWQQPDMSERQFRFLTACLDEL 58 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEIN-EVRRDKLLEKRL 127 + + I F +++E L S + +T L+ +++ RD+ + + Sbjct: 59 KTVAQDRSIHF----VIKVGEAVEVLTSLHQKYAITALWSHQETGNGWTFARDQRVSRWC 114 Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187 Q+ I P H + A ++ + LP + P Sbjct: 115 QYHHI----------PWHEPAQHGVVRRLANRSGWAARWYRQMKQPIAELPPVIHSIDEP 164 Query: 188 VTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIP--AIQGTSQL 245 P + + G AL +L F E+ Y P A + S+L Sbjct: 165 SDSWPSPADLGWVNAETAQIQSGGRSRALGLLHDFLHERGETYARAMSSPVTAFERCSRL 224 Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPK-------SGAFSWLNELIWREFYRHLMAFY 298 SP+L+ G +S R+ + ++ + L+++P S S+ L W + + Sbjct: 225 SPHLAFGTVSIREVFQAVEARKLALMMQPPTERGMWPSALRSFSGRLRWHCHFIQKLEDE 284 Query: 299 PSV--CMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMI 356 P + C P + E+N +AW+ G TG+P++DA MR L GW++ R+R + Sbjct: 285 PRIEFCNLHPAYEGLRESEFNPA--FFEAWQAGRTGYPMVDACMRALKATGWLNFRMRAM 342 Query: 357 TASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGK 416 SF L + WR Y D + + Q +G + RI+NP QG Sbjct: 343 VMSFASYHLWLHWRQPALYLARMFTDYEPGIHYS--QAQMQSGTTGINTLRIYNPIKQGI 400 Query: 417 RFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYA 476 DP+G FIR W+PEL ++ +IH P WL + + NYP PIVD +A + Y Sbjct: 401 DHDPEGVFIRRWVPELMDLDRTWIHTP--WLAPSPPT-NYPRPIVDEVQARKAAAEKIYQ 457 Query: 477 AKK 479 +K Sbjct: 458 LRK 460 >gi|260436401|ref|ZP_05790371.1| deoxyribodipyrimidine photo-lyase type I [Synechococcus sp. WH 8109] gi|260414275|gb|EEX07571.1| deoxyribodipyrimidine photo-lyase type I [Synechococcus sp. WH 8109] Length = 493 Score = 137 bits (345), Expect = 4e-30, Method: Compositional matrix adjust. Identities = 128/484 (26%), Positives = 201/484 (41%), Gaps = 53/484 (10%) Query: 8 SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67 ++ +VW + DLRI D++ L AA V+ +++ PE W+Q S RQ F SLL+ Sbjct: 3 ALQIVWFKRDLRIVDHQPLAAAAER--GLVLPLYVVEPELWQQPDASERQWMFCRESLLE 60 Query: 68 VQKSLSQKGI--------VFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINE-VR 118 ++++L+ +G V Q + + I+ L S+ ++ Y R + R Sbjct: 61 LRQALADRGQPLVVRAGDVVQVLERARRQFGIDGLWSH--EETGNGWTYQRDKRVGAWAR 118 Query: 119 RDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLP 178 R + + + + G +QM + TP AL Q+L D +P Sbjct: 119 RHGIAWTEIPQFGVTRQMRSRN----GWAKRWEVQMMEPITPVPAAL-QSLEGIDPGVIP 173 Query: 179 VPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIP- 237 R + P G L L F + + Y P Sbjct: 174 ERPCR--------------ELPVDGCPQRQTGGRSIGLGELSDFLQHRASRYQRAMSSPN 219 Query: 238 -AIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMA 296 A G S+LS YL+ G LS ++E G S+ + L W + + Sbjct: 220 TAFTGCSRLSAYLTWGCLS-------MREVLQTSRTNSGRGVSSFESRLHWHCHFIQKLE 272 Query: 297 FYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMI 356 P++ F P+ I D+ L AW +G TG P +DA MR L GW++ R+R + Sbjct: 273 DQPAIEYSD-FHPFMRGIR-ADDAERLTAWSEGRTGVPFVDACMRALRAHGWINFRMRAM 330 Query: 357 TASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGW-QWAASTGNDSVPYFRIFNPTIQG 415 SF +L + WR + Q +D + + W Q +G+ S+ RI+NP QG Sbjct: 331 LMSFASYNLWLPWRDSGLHLARQFVDYEPGIH---WSQCQMQSGSTSINTIRIYNPIKQG 387 Query: 416 KRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYY 475 DPQG FIR W PEL +VP +IH P W+ L P PIVD + ++ + Sbjct: 388 MDHDPQGLFIRQWCPELKDVPKIHIHEP--WM----LGGGMPPPIVDVTTSMQDAKDRIW 441 Query: 476 AAKK 479 ++ Sbjct: 442 EVRR 445 >gi|195030094|ref|XP_001987903.1| GH10854 [Drosophila grimshawi] gi|193903903|gb|EDW02770.1| GH10854 [Drosophila grimshawi] Length = 538 Score = 137 bits (345), Expect = 4e-30, Method: Compositional matrix adjust. Identities = 144/500 (28%), Positives = 219/500 (43%), Gaps = 60/500 (12%) Query: 1 MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAK-----VIAVFIATPEQWRQHGISA 55 M A VH W R LR+ DN AL+ + A V +FI P + A Sbjct: 1 MTAQRRTLVH--WFRKGLRVHDNPALFQIFEVARAAPEKFYVRPIFILDPGILDWMQVGA 58 Query: 56 RQSHFIYASLL---QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQY 112 + F+ SL Q ++L+ + V + F E + +V L Y Sbjct: 59 NRWRFLQQSLSDLDQQLRALNTRLFVVRGKPVDIFPGLFE-------RWQVQLLTYETDI 111 Query: 113 EINEVRRDKLLEKRL--QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLV 170 E V RD +++ Q + ++ P I+ + + Y F +++ L Sbjct: 112 EPYAVLRDAAVQQLAASQGVKVDTHCSHTIYNPELVIVRNLGKPPITYQKFL-GIVEKLK 170 Query: 171 QADLRSLPVPAIRLTGPVTPSNIPRFFDYPF--QAIDP-------MFPIGEQNALHILRK 221 + + P P+ S+I +DYP Q + FP GE AL + Sbjct: 171 LPKVLNKPKKLPDGMQPLADSDI---YDYPTLEQLVKRPEDLGINKFPGGESEALRRMEA 227 Query: 222 FCKEK--VYYYVEQRDIPAI--QGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSG 277 ++ V + + + P T+ LSPYL G LS R RL+E L +PK Sbjct: 228 SLADEQWVAKFEKPKTAPNSLEPSTTVLSPYLKFGCLSARLFHERLQE---ILARQPKHS 284 Query: 278 A--FSWLNELIWREFYRHLMAFYPSV--CMGKPF---IPWTEKIEWNKDSHLLQAWKQGY 330 S + +L+WREFY + A P+ +G + IPW E+ E L+AW G Sbjct: 285 KPPVSLVGQLLWREFYYTVAAAEPNFDRMLGNAYCLQIPWQEQPE------HLEAWAHGR 338 Query: 331 TGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNN 389 TG+P IDA MRQL GW+H+ R A FL + DL + W G+ F LLD D A N Sbjct: 339 TGYPFIDAIMRQLRQEGWIHHLARHAVACFLTRGDLWISWEEGQRVFEQLLLDQDWALNA 398 Query: 390 GGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAP--HSWL 447 G W W +++ YFR+++P GK+ DP+G +I+ ++PEL P + I+ P + Sbjct: 399 GNWMWLSASAFFH-QYFRVYSPVAFGKKTDPKGDYIKKYVPELAKYPAKCIYEPWKATLG 457 Query: 448 DKND----LSLNYPLPIVDH 463 ++ D L +YP IV+H Sbjct: 458 EQRDYGCVLGSDYPHRIVNH 477 >gi|86147737|ref|ZP_01066045.1| deoxyribodipyrimidine photolyase [Vibrio sp. MED222] gi|85834518|gb|EAQ52668.1| deoxyribodipyrimidine photolyase [Vibrio sp. MED222] Length = 466 Score = 137 bits (345), Expect = 4e-30, Method: Compositional matrix adjust. Identities = 131/465 (28%), Positives = 210/465 (45%), Gaps = 63/465 (13%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIA------TPEQWRQHGISARQSHFIY 62 + L NDLRI DN+ L+ A S K+I V + + + ++ A + F+ Sbjct: 4 IGLYLFTNDLRINDNQLLHYAVQ-SVGKLICVIVEPTLVRFSADLAQEQSYGAHRQTFVS 62 Query: 63 ASLLQVQKSLSQKG--IVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120 S+ ++ +L + G +V + D + + L Q VT F N +E + Sbjct: 63 QSITNLESNLVKFGQQLVVIHSNHLEPDAAEQTLSQIIATQHVTHFFANAHCGYDERQLI 122 Query: 121 KLLEKRLQHRVICKSFDDSVLLPPGSIL--NHAL--QMYKV---YTPFRKA---LIQNLV 170 L+ R + + C LP S L H L ++ KV +T FRK L N Sbjct: 123 HSLQSRHPNLITC--------LPHHSTLFDQHELSFELSKVPSSFTKFRKLVEHLDVNRN 174 Query: 171 QADLRSLPVPAIRLTGPVTPSNIPRFFDYPF----QAIDPMFPIGEQNAL-HILRKFCKE 225 + + +LP PA+RL T ++ + A+ + GE L H+ F + Sbjct: 175 ETVISALP-PAVRLALTSTSTSTSTISLFSSPNDESAVISDYWGGEDAGLAHLENYFSHD 233 Query: 226 KVYYYVEQRD-IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLN- 283 + Y + R+ I+ +++ SP+L++G +SP+ + LK+ D + + W+ Sbjct: 234 YAFNYKQTRNAFDGIENSTKFSPWLALGCVSPKTIYCHLKQFEAD---HGSNDSTYWIYF 290 Query: 284 ELIWREFYRHLMAFYPSVCMGKPFIPWTE--KIEWNKDSHLLQ----AWKQGYTGFPIID 337 EL+WRE++ ++ + +G T K++ + S L WK G T +PI+D Sbjct: 291 ELLWREYF-----YWKCLSLGSSLFGETSNHKLDSSNSSATLNLNLAKWKSGNTNYPIVD 345 Query: 338 AAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAAS 397 A MRQLNT G+M NR R + AS L+ +L +DWR G YF SQL+D D+ASN G W + A Sbjct: 346 ACMRQLNTTGYMSNRGRQLAASCLIYELGIDWRHGAAYFESQLIDYDVASNWGNWAYIAG 405 Query: 398 --------------TGNDSVPYFRIFNPTIQGKRFDPQGTFIRHW 428 N + P R F+ Q +DP FI W Sbjct: 406 ALRPQVSTQTNKQKNANQAQPKSRHFDLGKQTDMYDPDHAFINKW 450 >gi|148238972|ref|YP_001224359.1| deoxyribodipyrimidine photolyase [Synechococcus sp. WH 7803] gi|147847511|emb|CAK23062.1| Deoxyribodipyrimidine photolyase [Synechococcus sp. WH 7803] Length = 490 Score = 137 bits (345), Expect = 4e-30, Method: Compositional matrix adjust. Identities = 128/484 (26%), Positives = 206/484 (42%), Gaps = 47/484 (9%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M++ LVW + DLR+ D++ L A + V+ ++I PE W Q SARQ F SL Sbjct: 1 MTLQLVWFKRDLRLVDHQPLARAL--ARGPVLPLYIVEPELWSQPDCSARQWAFCRESLQ 58 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQY-EINEVRRDKLLEK 125 +Q++ + G D+++ L+ Q V+ L+ + + RD+ + Sbjct: 59 DLQQACAALGQPLIIRS----GDAVDVLERARCQLGVSALWSHEETGNAWTFVRDRRVAA 114 Query: 126 RLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185 + R I LP ++ + + + + A P+P I Sbjct: 115 WARERGIPWH-----ELPQFGVVRRLGTRRGWARRWEARMGEAMTPAPTSLTPLPGI--- 166 Query: 186 GPVTPSNIPRFFDYPFQAIDPM---FPIGEQNALHILRKFCKEKVYYYVEQRDIP--AIQ 240 P ++P ++ DP G AL L F +V Y P A Sbjct: 167 ---APGDLPTSEALALRS-DPCPHRQHGGRGMALQELDDFLAHRVQRYCRSISSPNLAFN 222 Query: 241 GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPS 300 G S+LS Y++ G LS R+ R ++ +K + G S+ + L W + + P Sbjct: 223 GCSRLSAYITWGCLSMREVLQRSRD------LKGR-GVSSFTSRLHWHCHFIQKLEDQPP 275 Query: 301 VCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASF 360 + + F P+ I + D AW +G TG P +DA MR L GW++ R+R + SF Sbjct: 276 I-EWEDFHPFMRGIR-SLDHERFAAWAEGQTGVPFVDACMRALRAHGWINFRMRAMLMSF 333 Query: 361 LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAAS---TGNDSVPYFRIFNPTIQGKR 417 +L + WR + Q +D G W+ +G+ S+ RI+NP QG Sbjct: 334 ASYNLWLPWRETGLHLARQFVD-----YEPGIHWSQCQMQSGSTSINTIRIYNPIKQGMD 388 Query: 418 FDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477 DP+GTFIR W PEL +VP ++H P S L P PIVD ++ + + Sbjct: 389 HDPEGTFIRRWCPELEDVPAVHLHEPWS------LGGTRPKPIVDCAQSAREAKERIFEI 442 Query: 478 KKQS 481 ++ S Sbjct: 443 RRSS 446 >gi|110637463|ref|YP_677670.1| deoxyribodipyrimidine photo-lyase type I [Cytophaga hutchinsonii ATCC 33406] gi|110280144|gb|ABG58330.1| deoxyribodipyrimidine photo-lyase (single-stranded DNA-specific) [Cytophaga hutchinsonii ATCC 33406] Length = 434 Score = 137 bits (345), Expect = 4e-30, Method: Compositional matrix adjust. Identities = 121/444 (27%), Positives = 200/444 (45%), Gaps = 37/444 (8%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAV-------FIATPEQWRQHGISARQSH 59 M +VW + DLR+ DN+ L A SD ++I V F TP +++ G ++ Sbjct: 1 MKRSIVWFKTDLRLHDNETLVRAIEQSD-EIIPVYCLDEDHFKITPFGFQKTG--NFRAQ 57 Query: 60 FIYASLLQVQKSLSQKG---IVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINE 116 F+ SL + +L + G IV + + ++ +++ K+F R+ E Sbjct: 58 FLLESLNDLDTNLRKLGSGLIVVRGKPETELYKIVKQYEAF-------KVFAKREVAYEE 110 Query: 117 VRRDKLLEKRL-QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLR 175 + + +EK + + +SF S L + + +V+T FRK + + ++ +R Sbjct: 111 QQTEARVEKEIWKLGCTFESFSTSTLYHAQDLPFSIKDIPEVFTNFRKKVEK---ESSIR 167 Query: 176 SLPVPAIRLTGPVTPS-NIPRFFDYPFQAI--DP----MFPIGEQNALHILRKFCKEK-- 226 S+ + P P +P Q + DP F GE L + E Sbjct: 168 SVFQKPAHIKSPAMPQLRLPTVKGLGLQPVIQDPRAVMKFTGGESEGCKRLTSYLFETQL 227 Query: 227 VYYYVEQRD-IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNEL 285 + +Y RD + +++ SP+L++G LSPR+ + LK+ + + + EL Sbjct: 228 ISHYKNTRDGMIGSDYSTKFSPWLALGCLSPREIYTELKK--YESRFSANESTYWLIFEL 285 Query: 286 IWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNT 345 +WR+++R +M + I + +D+ +L W G TG IDA M +L Sbjct: 286 LWRDYFRFMMKKHKHQFFLYSGIKDSANASGLQDTAILSQWINGKTGNDFIDANMLELTH 345 Query: 346 IGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPY 405 G+M NR R AS+L DL +DWR G YF QL+D D+ SN G W + A GND Sbjct: 346 TGFMSNRGRQNAASYLCNDLGIDWRYGAAYFEQQLIDYDVCSNWGNWAYLAGVGNDPRGK 405 Query: 406 FRIFNPTIQGKRFDPQGTFIRHWL 429 R FN Q + +DP+ F WL Sbjct: 406 -RNFNIEKQAEEYDPKKLFRNLWL 428 >gi|77166866|gb|ABA62409.1| cryptochrome 2 [Danaus plexippus] Length = 742 Score = 137 bits (344), Expect = 5e-30, Method: Compositional matrix adjust. Identities = 101/289 (34%), Positives = 140/289 (48%), Gaps = 26/289 (8%) Query: 206 PMFPIGEQNALHILRKFCKEK--VYYYVEQRDIPAIQGTSQ--LSPYLSIGVLSPRQCWN 261 P++ GE AL L + + K V + + P +SQ LSPYL G LS R + Sbjct: 234 PIWIGGENEALLRLERHLERKAWVASFGRPKMTPESLLSSQTGLSPYLRFGCLSTRLFYY 293 Query: 262 RLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSV--CMGKPFIPWTEKIEWNKD 319 +L E + IK + S +++WREF+ P+ G P +I W K+ Sbjct: 294 QLSELYKR--IKQERPPLSLHGQILWREFFYCAATRNPNFDRMEGNPIC---VQIPWEKN 348 Query: 320 SHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMS 378 L+ W G TGFP IDA M QL GW+H+ R A FL + DL + W G + F Sbjct: 349 QEALKKWANGQTGFPWIDAIMIQLRNDGWIHHLARHAVACFLTRGDLWISWEEGMKVFDE 408 Query: 379 QLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQ 438 LLD D + N G W W S + +F + P G++ DP G FIR ++P L N+PT+ Sbjct: 409 LLLDADWSVNAGMWMW-LSCSSFFQQFFHCYCPVRFGRKTDPNGDFIRKYIPVLKNMPTR 467 Query: 439 YIHAPHSWLDKND--------LSLNYPLPIVDHKKACHHTLN---QYYA 476 YIH P W+ + + +YP+PIVDH KA L Q YA Sbjct: 468 YIHEP--WVCPEEIQKSIRCIIGKDYPMPIVDHTKASEINLERIKQVYA 514 >gi|126662376|ref|ZP_01733375.1| probable bacterial cryptochrome [Flavobacteria bacterium BAL38] gi|126625755|gb|EAZ96444.1| probable bacterial cryptochrome [Flavobacteria bacterium BAL38] Length = 440 Score = 137 bits (344), Expect = 5e-30, Method: Compositional matrix adjust. Identities = 124/446 (27%), Positives = 204/446 (45%), Gaps = 40/446 (8%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQ-----SHFIYASL 65 LVW RNDLR DN +LY AC +D VI ++ P + ++ S F+ ++ Sbjct: 10 LVWFRNDLRTIDNHSLYNACRENDT-VIGIYCLDPRHFEITPFGFKKTEKFRSQFLLETV 68 Query: 66 LQVQKSLSQKGI-VFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQY--EINEVRRDKL 122 ++QK+L +K I + Y+ + + ++ ++ ++ E NE+ ++ Sbjct: 69 TELQKNLLEKNIRLLVYYGYPEI-----LIPEIIAKYQIHSIYSQHEWTSEENEIEQEI- 122 Query: 123 LEKRLQHRVICKSFDDSVLLPPGSI-LNHALQMYKVYTPFRKALIQNL-VQADLRSLPVP 180 + L V K+ D L P + ++ +V+T FRK + + + V+ + P P Sbjct: 123 --RNLISAVNWKNHYDQFLFHPADLPFEDWKKIPEVFTDFRKQIEKKIRVRPTVAISPKP 180 Query: 181 AIRLTGPVTPSNIPRFFDYPF--------QAIDPMFPI--GEQNALHILRKF---CKEKV 227 L TP IP D F Q FP GE +A ++ + K+ Sbjct: 181 LTNLIEETTP--IPTLKDLGFDSEASDFKQPEKTAFPFKGGENHAKKRIKDYFWDTKKLA 238 Query: 228 YYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIW 287 Y + + +S+LS +L+ G +S R + + ++F +IK + + + ELIW Sbjct: 239 VYKKTRNGLIGKNYSSKLSAWLANGSVSARTIYWEV-QKFEKKVIKNED-TYWLIFELIW 296 Query: 288 REFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIG 347 R++++++ + + I E WN++ W G T ++A M +L G Sbjct: 297 RDYFKYISLKHGNKIFQLNGILQKE-YHWNQNKKAFNQWANGTTPEHFVNANMIELQKTG 355 Query: 348 WMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFR 407 WM NR R AS+ K+ DWRIG YF S L+D D+ SN G W + A GND P R Sbjct: 356 WMSNRGRQNVASYWAKEWEQDWRIGAAYFESMLIDYDVHSNYGNWMYNAGVGND--PRDR 413 Query: 408 IFNPTIQGKRFDPQGTFIRHWL-PEL 432 FN Q + +D G F + WL PEL Sbjct: 414 KFNIKRQAEMYDADGKFQKMWLIPEL 439 >gi|195119085|ref|XP_002004062.1| GI19664 [Drosophila mojavensis] gi|193914637|gb|EDW13504.1| GI19664 [Drosophila mojavensis] Length = 532 Score = 137 bits (344), Expect = 5e-30, Method: Compositional matrix adjust. Identities = 136/506 (26%), Positives = 207/506 (40%), Gaps = 56/506 (11%) Query: 13 WLRNDLRITDNKALYAACHNSDAK-----VIAVFIATPEQWRQHGISARQSHFIYASLLQ 67 W R LR+ DN AL + + A V +F+ P + A + F+ SLL Sbjct: 11 WFRKGLRVHDNPALIQIFNKAGASPDKFSVRPIFVLDPGILDWMKVGANRWRFLQQSLLD 70 Query: 68 VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK-R 126 + K+L + + D D + V L + E V+RDK ++ Sbjct: 71 LDKNLKELNSRLYIVRGKPVDIFPNLFDRW----NVELLTFETDIEPYAVKRDKAVQDIA 126 Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 H V + + P ++ + ++++ L + P RL Sbjct: 127 AAHGVKVDTHCSHTIYNPEIVIAKNFGRAPITYQKFLSVVEKLKLPKVLDKPQ---RLPN 183 Query: 187 PVTP---------------SNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYV 231 V P + + P + FP GE+ AL L ++ ++V Sbjct: 184 GVQPIADELEMGQSDVYECPTLDQLVKRPQELGINKFPGGEREALRRLDTSLSDE--HWV 241 Query: 232 EQRDIPAIQ------GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNEL 285 + P T+ LSPYL G LS R RL E + K S + +L Sbjct: 242 ASFEKPNTAPNSLEPSTTVLSPYLKFGCLSARLVHQRL-HEILKRHPKHSKPPVSLVGQL 300 Query: 286 IWREFYRHLMAFYPSV--CMGKPF---IPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAM 340 +WREFY A P+ +G + IPW E+ + L AW G TG+P IDA M Sbjct: 301 LWREFYYTAAAVEPNFDRMLGNVYCLQIPWQERPD------HLDAWAHGRTGYPFIDAIM 354 Query: 341 RQLNTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTG 399 RQL GW+H+ R A FL + DL + W G+ F LLD D A N G W W +++ Sbjct: 355 RQLRQEGWIHHLARHAVACFLTRGDLWISWEEGQRVFEELLLDHDWALNAGNWMWLSASA 414 Query: 400 NDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAP--HSWLDKND----LS 453 YFR+++P GK+ D G +IR ++PEL P I+ P + D+ + L Sbjct: 415 FFH-QYFRVYSPVAFGKKTDRTGAYIRKYVPELAKYPAGCIYEPWKATLADQREFGCVLG 473 Query: 454 LNYPLPIVDHKKACHHTLNQYYAAKK 479 ++YP IV+H + + AA K Sbjct: 474 IDYPHRIVNHDIVHKENIKRMSAAYK 499 >gi|19173768|ref|NP_596896.1| cryptochrome-2 [Rattus norvegicus] gi|81867613|sp|Q923I8|CRY2_RAT RecName: Full=Cryptochrome-2 gi|15072464|gb|AAK61419.1| cryptochrome 2 [Rattus norvegicus] Length = 594 Score = 137 bits (344), Expect = 5e-30, Method: Compositional matrix adjust. Identities = 143/502 (28%), Positives = 211/502 (42%), Gaps = 61/502 (12%) Query: 1 MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHF 60 M A A SVH W R LR+ DN AL AA + V V+I P + + F Sbjct: 16 MGADGASSVH--WFRKGLRLHDNPALLAAVRGARC-VRCVYILDPWFAASSSVGINRWRF 72 Query: 61 IYASLLQVQKSLSQ---KGIVFQYHQCSNFDDSI-EWLDSYCLQQRVTKLFYNRQYEINE 116 + SL + SL + + V + F EW VT+L + E Sbjct: 73 LLQSLEDLDTSLRKLNSRLFVVRGQPADVFPRLFKEW--------GVTRLTFEYDSEPFG 124 Query: 117 VRRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLV-QADLR 175 RD + K + + ++S L L+ +++ P Q L+ + +L Sbjct: 125 KERDAAIMKMAKEAGVEVVTENSHTL---YDLDRIIELNGQKPPLTYKRFQALISRMELP 181 Query: 176 SLPVPAI------RLTGPVTPS-----NIPRF--FDYPFQAIDP-MFPIGEQNALHILRK 221 PV A+ + + +P +P + + P ++ GE AL L K Sbjct: 182 KKPVGAVSSQHMENCRAEIQENHDDTYGVPSLEELGFPTEGLGPAVWQGGETEALVRLDK 241 Query: 222 FCKEKVYYYVEQRDIPAIQGTS------QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPK 275 + K + V + P + S LSPYL G LS R + RL DL K K Sbjct: 242 HLERKAW--VANYERPRMNANSLLASPTGLSPYLRFGCLSCRLFYYRL----WDLYRKVK 295 Query: 276 SGA---FSWLNELIWREFYRHLMAFYPSV--CMGKPFIPWTEKIEWNKDSHLLQAWKQGY 330 + S +L+WREF+ P G P +I W+++ L W +G Sbjct: 296 RNSTPPLSLFGQLLWREFFYTAATNNPRFDRMEGNPIC---IQIPWDRNPEALAKWAEGK 352 Query: 331 TGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNN 389 TGFP IDA M QL GW+H+ R A FL + DL V W G F LLD D + N Sbjct: 353 TGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWVSWESGVRVFDELLLDADFSVNA 412 Query: 390 GGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIH----APHS 445 G W W + + +F + P G+R DP G +IR +LP+L P++YI+ AP S Sbjct: 413 GSWMWLSCSAFFQQ-FFHCYCPVGFGRRTDPSGDYIRRYLPKLKGFPSRYIYEPWNAPES 471 Query: 446 WLDKND--LSLNYPLPIVDHKK 465 + + ++YP PIV+H + Sbjct: 472 VQKAANCIIGVDYPRPIVNHAE 493 >gi|15341190|gb|AAK94665.1| cryptochrome 1 [Xenopus laevis] Length = 616 Score = 137 bits (344), Expect = 5e-30, Method: Compositional matrix adjust. Identities = 137/492 (27%), Positives = 206/492 (41%), Gaps = 48/492 (9%) Query: 7 MSVHLV-WLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASL 65 M V+ V W R LR+ DN AL +D V V+I P + + F+ L Sbjct: 1 MGVNAVHWFRKGLRLHDNPALRECIQGADT-VRCVYILDPWFAGSSNVGINRWRFLLQCL 59 Query: 66 LQVQ---KSLSQKGIVFQYHQCSNFDDSI-EWLDSYCLQQRVTKLFYNRQYEINEVRRDK 121 + + L+ + V + F EW ++TKL E RD Sbjct: 60 EDLDANLRKLNSRLFVIRGQPADVFPRLFKEW--------KITKLSIEYDSEPFGKERDA 111 Query: 122 LLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLV-QADLRSLPVP 180 ++K + S L L+ +++ P Q L+ + D +PV Sbjct: 112 AIKKLASEAGVEVIVRISHTL---YDLDKIIELNGGQPPLTYKRFQTLISKMDPLEIPVE 168 Query: 181 AI------RLTGPVTPS-----NIPRFFDYPFQA---IDPMFPIGEQNALHILRKFCKEK 226 I + T PV+ +P + F ++P GE AL L + + K Sbjct: 169 TITAEVMEKCTTPVSDDHDEKYGVPSLEELGFDTEGLPSAVWPGGETEALTRLERHLERK 228 Query: 227 VYYYVEQRDI----PAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWL 282 + +R + T+ LSPYL G LS R + +L + + + K S S Sbjct: 229 AWVANFERPRMNANSLLASTTGLSPYLRFGCLSCRLFYFKLTDLYKKVK-KNSSPPLSLY 287 Query: 283 NELIWREFYRHLMAFYPSVCMGK-PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMR 341 +L+WREF+ P C K P +I W+++ L W +G TGFP IDA M Sbjct: 288 GQLLWREFFYTAATNNP--CFDKMDGNPICVQIPWDRNPEALAKWAEGRTGFPWIDAIMT 345 Query: 342 QLNTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGN 400 QL GW+H+ R A FL + DL + W G + F LLD D + N G W W S + Sbjct: 346 QLRQEGWIHHLARHAVACFLTRGDLWISWEEGMKVFEELLLDADWSVNAGSWMW-LSCSS 404 Query: 401 DSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLD------KNDLSL 454 +F + P GKR DP G +IR +LP L P +YI+ P + + K + + Sbjct: 405 FFQQFFHCYCPVGFGKRTDPNGDYIRRYLPILKGFPPKYIYDPWNAPETVQKAAKCIIGV 464 Query: 455 NYPLPIVDHKKA 466 NYP P+V+H +A Sbjct: 465 NYPKPMVNHAEA 476 >gi|193702257|ref|XP_001946012.1| PREDICTED: cryptochrome-1-like [Acyrthosiphon pisum] Length = 535 Score = 137 bits (344), Expect = 5e-30, Method: Compositional matrix adjust. Identities = 95/297 (31%), Positives = 145/297 (48%), Gaps = 37/297 (12%) Query: 207 MFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ------GTSQLSPYLSIGVLSPRQCW 260 ++P GE+ AL L ++ K K + V + + P T+ LSPY+ G LS + Sbjct: 225 LYPGGEKEALRRLEEYMKNKTW--VCKFEKPNTSPNSLKPSTTVLSPYMKFGCLSASHFY 282 Query: 261 NRLKEEFVDLLIKPKSGA-FSWLNELIWREFYRHLMAFYP--------SVCMGKPFIPWT 311 RLKE + P S S + +L WREFY + A P S+C Sbjct: 283 YRLKEVIGN---SPHSKPPVSLIGQLYWREFYYTVGASTPNFDKMVGNSICC-------- 331 Query: 312 EKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK-DLLVDWR 370 ++ W+ + L+AW G TG+P IDA MRQL GW+H+ R A FL + DL + W Sbjct: 332 -QVPWDNNPDALEAWTNGKTGYPFIDAIMRQLRDEGWIHHLARHAVACFLTRGDLWISWE 390 Query: 371 IGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLP 430 G F LLD D + N G W W +++ +FR+++P GK+ D G +IR ++P Sbjct: 391 KGLAVFEELLLDADWSMNAGNWMWLSASAFFHQ-FFRVYSPVAFGKKTDKSGDYIRKYIP 449 Query: 431 ELNNVPTQYIH----APHSWLDKND--LSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481 EL P QYI+ AP S ++ + ++YP +V H+ + + + A K + Sbjct: 450 ELAKYPDQYIYEPWSAPKSIQERAGCVVGVHYPKRVVVHEDVYKNNIAKMSLAYKST 506 >gi|321466446|gb|EFX77441.1| CRY-D [Daphnia pulex] Length = 525 Score = 137 bits (344), Expect = 6e-30, Method: Compositional matrix adjust. Identities = 121/463 (26%), Positives = 196/463 (42%), Gaps = 38/463 (8%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 ++++W R LRI DN AL +A NS IA+F+ + F+ L + Sbjct: 1 MNVLWFRRGLRIHDNPALLSALENS-KDFIALFVFDTTFQDPGYKPYHMNGFLLECLHDL 59 Query: 69 QKSLSQKGIVFQYHQCSNFD-----DSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLL 123 +SL G Q + +I+ ++ C Q +F+ R + + + Sbjct: 60 NESLESVGTKLHVFQGCPLEVFRHLHNIKPINKLCFIQDCEPIFHERDIAAKNLCSELDI 119 Query: 124 E--KRLQHRV-----ICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRS 176 E + + H + I S + L ++ A+ + P + + L Sbjct: 120 EVYEHVAHTLWDPMDIIASNGGTPPLTYEMFVHVAMSVGDPPKPVADPEWKGVKFLTLEP 179 Query: 177 LPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALH--ILRKFCKEKVY---YYV 231 L G V + + P GE NAL +R +E + +Y Sbjct: 180 FESNRFTLFGGVPTLSQIGVPENPVGCRGRRIFGGETNALKHFAIRLQAEETAFRSGFYQ 239 Query: 232 EQRDIPAIQGTS-QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREF 290 + P + G LS +S+G +S R + R+ E F + ++IWR++ Sbjct: 240 PNQARPDLLGPPLSLSAAISVGAISVRLFYWRIHEIFDKVNRGNPPAWLGITGQIIWRDY 299 Query: 291 YRHLMAFYPS--------VCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQ 342 + + P +C+ IPW E E + WK G TG+P IDA MRQ Sbjct: 300 FYAMSRMNPKFDKEVDNPICLQ---IPWVENEE------FFEKWKNGQTGYPFIDAGMRQ 350 Query: 343 LNTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGND 401 LN GWMH+ +R A FL + DL ++W IG EY +QL+D D + N+G W W +S+ + Sbjct: 351 LNQEGWMHHSVRNAVAMFLTRGDLWLNWDIGAEYMANQLVDSDWSVNSGNWMWVSSSAFE 410 Query: 402 SVPYFRI-FNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAP 443 + + N + GKR +P G +IR ++PEL N +YIH P Sbjct: 411 RLLDCSVCINSVLYGKRLEPSGDYIRRYVPELANFEFEYIHEP 453 >gi|194900020|ref|XP_001979555.1| GG23184 [Drosophila erecta] gi|190651258|gb|EDV48513.1| GG23184 [Drosophila erecta] Length = 542 Score = 137 bits (344), Expect = 6e-30, Method: Compositional matrix adjust. Identities = 131/512 (25%), Positives = 228/512 (44%), Gaps = 58/512 (11%) Query: 8 SVHLVWLRNDLRITDNKALYAACHNSDAKV--IAVFIATPEQWRQHGISARQSHFIYASL 65 +++W R+ LR+ DN AL AA + D V I VFI E + + F+ SL Sbjct: 5 GANVIWFRHGLRLHDNPALLAALADKDQGVALIPVFIFDGESAGTKNVGYNRMRFLLDSL 64 Query: 66 L----QVQKSLSQKG--IVFQYHQCSNFDDSIEW--LDSYCLQQRVTKLFYNRQYEINEV 117 Q+Q++ +G +VF+ F E L C++Q ++ +R I + Sbjct: 65 QDIDDQLQEATDGRGRLLVFEGEPAFIFRRLHEQVRLHRLCIEQDCEPIWNHRDETIRAL 124 Query: 118 RRDKLLE--KRLQHRVICKSF--DDSVLLPPGS--ILNHALQMYKVYTPFRKALIQNLVQ 171 R+ ++ +++ H + + + +PP + + H +Q+ + P R L Sbjct: 125 CRELGIDFVEKVSHTLWDPQLVIETNGGIPPLTYQMFLHTVQI--IGLPPRPTADARLED 182 Query: 172 ADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPI----GEQNALHILRKFCKEKV 227 A L R P F+ + + I GE+ AL +L + K + Sbjct: 183 ATFVELDPEFRRSINMFEKLPTPHHFNVYEDNMGFLAKIKWRGGEKQALLLLGERLKVEQ 242 Query: 228 Y-----YYVEQRDIPAIQGTSQ-LSPYLSIGVLSPRQCWNRLKEEFVDLLIKP------K 275 + +Y+ + +P I + + +S +L G LS R+ + + + F ++ ++ Sbjct: 243 HAFERGFYLPNQALPNIHDSPKSMSAHLRFGCLSVRRFYWSVHDLFKNVQLRACVRGVQM 302 Query: 276 SGAFSWLNELIWREFYRHLMAFYPS--------VCMGKPFIPWTEKIEWNKDSHLLQAWK 327 +G +LIWRE++ + P+ +C+ IPW + E LLQ W+ Sbjct: 303 TGGAHITGQLIWREYFYTMSVNNPNYDRMEGNEICLS---IPWAKPKE-----DLLQRWR 354 Query: 328 QGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLA 386 G TGFP+ID AMRQL GW+H+ LR A+FL + L W G ++F+ LLD D + Sbjct: 355 LGQTGFPLIDGAMRQLLAEGWLHHTLRNTVATFLTRGGLWQSWEHGLQHFLKYLLDADWS 414 Query: 387 SNNGGWQWAASTGNDSVPYFRIFN-PTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHS 445 G W W +S+ + + + P KR DP GT+I+ ++PEL VP +++H P Sbjct: 415 VCAGNWMWVSSSAFERLLDSSLVTCPVALAKRLDPDGTYIKQYVPELVKVPKEFVHEPWR 474 Query: 446 WLDKND------LSLNYPLPIVDHKKACHHTL 471 + + ++YP I+D A + Sbjct: 475 MSAEQQEQYECLIGVHYPERIIDLTMAVQRNM 506 >gi|294084365|ref|YP_003551123.1| deoxyribodipyrimidine photolyase [Candidatus Puniceispirillum marinum IMCC1322] gi|292663938|gb|ADE39039.1| deoxyribodipyrimidine photolyase [Candidatus Puniceispirillum marinum IMCC1322] Length = 515 Score = 136 bits (343), Expect = 6e-30, Method: Compositional matrix adjust. Identities = 126/493 (25%), Positives = 201/493 (40%), Gaps = 48/493 (9%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 +H+VW + DLR+ D+ L AA ++ V+ +++ P W Q +S R F+ +L + Sbjct: 1 MHVVWFKKDLRVWDHAPLVAA--SAAGAVLPIYVVEPALWAQPDMSYRHYAFLGETLASL 58 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128 +SL++ G + D L + +T L Y E + L Sbjct: 59 DESLTKLGQPLVIYA----GDMPSVLAGIHQKYGITAL-----YSHEETGNGWTYARDLA 109 Query: 129 HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRK-----ALIQNLVQADLRSLPVPAIR 183 + CK H Y V+ P R ++QAD+ VPA Sbjct: 110 VQEWCKDH---------HCPWHEFAQYGVHRPLRSRRGWAGKWDKMMQADV----VPAPD 156 Query: 184 LTGPVTPSNIPRFFDYPFQAIDPMF----PIGEQNALHILRKF--CKEKVYYYVEQRDIP 237 V +P +D G A+ +L+ F + + Y Y + Sbjct: 157 HLSSVGIKGVPLPSASALGLVDDECNERQKGGRNEAIALLKSFLASRGQKYRYEMSSPVT 216 Query: 238 AIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAF 297 A S+LS +L+ G +S R+ + + + + +W N L E H Sbjct: 217 AADSCSRLSAHLAFGAVSLREVFQASRRRQMAIRDSGTGNKRAWQNALKSFESRLHWHCH 276 Query: 298 YPSVCMGKP---FIPWTEKIEWNKDSHL-----LQAWKQGYTGFPIIDAAMRQLNTIGWM 349 + +P F P+ E +H L AW +G TG+P++DA MR L GW+ Sbjct: 277 FMQKLEDEPAIEFRPFHSAYESLDKTHADAASRLTAWVEGRTGYPLVDAVMRSLTATGWL 336 Query: 350 HNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIF 409 R+R +T SF L +DWR + +D + + Q +G + RI+ Sbjct: 337 TFRMRAMTMSFASYHLWLDWRSPARHLARSFIDYEPGIHYS--QCQMQSGITGINTIRIY 394 Query: 410 NPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHH 469 NP Q + DPQG FIR W+PEL ++ IH P W+ + D + +YP PIVD K A Sbjct: 395 NPIKQSQDQDPQGIFIRRWVPELRHISDNLIHTP--WI-RPDQAPDYPAPIVDEKIARKS 451 Query: 470 TLNQYYAAKKQSL 482 Q + +K S+ Sbjct: 452 ASQQMHDIRKSSM 464 >gi|157104635|ref|XP_001648498.1| DNA photolyase [Aedes aegypti] gi|122106526|sp|Q17DK5|CRY1_AEDAE RecName: Full=Cryptochrome-1 gi|108880271|gb|EAT44496.1| DNA photolyase [Aedes aegypti] Length = 545 Score = 136 bits (342), Expect = 8e-30, Method: Compositional matrix adjust. Identities = 131/517 (25%), Positives = 222/517 (42%), Gaps = 56/517 (10%) Query: 10 HLVWLRNDLRITDNKALYAACHN-----SDAKVIAVFIATPEQWRQHGISARQSHFIYAS 64 +++W R+ LR+ DN +L A N ++ +FI E + + F+ S Sbjct: 5 NILWFRHGLRLHDNPSLLEALRNDGTGSESVRLYPIFIFDGESAGTKLVGFNRMKFLLES 64 Query: 65 LLQVQKSLSQKG---IVFQYHQCSNFDDSIEWLD--SYCLQQRVTKLFYNRQYEINEVRR 119 L + + L + G VF+ + + E L+ C +Q ++ R I + R Sbjct: 65 LADLDRQLREIGGQLYVFKGNAVNVMRRLFEELNIRKLCFEQDCEPIWKARDDAIQNLCR 124 Query: 120 DKLLEKRLQHRVICKSFD-DSVLLPPGSILNHALQMYK-----VYTPFRKALIQNLVQAD 173 +++ + +V +D ++ G I QM+ + P R + + Sbjct: 125 --MMDVKCVEKVSHTLWDPQQIIRTNGGIPPLTYQMFLHTVDIIGKPPRPVAAPSFEFVE 182 Query: 174 LRSLP---VPAIRL--TGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKV- 227 S+P ++L ++P + +++ + GE AL L K++ Sbjct: 183 FGSIPSILAQEVKLQQVRNLSPEDFGIYYEGNPDISHQQWMGGETKALECLGHRLKQEEE 242 Query: 228 -----YYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQ---CWNRLKEEFVDLLIKPKSGAF 279 Y+ Q + + +S L G LS R C + L E+ G Sbjct: 243 AFLGGYFLPTQAKPEFLVPPTSMSAALRFGCLSVRMFYWCVHDLYEKVQANNQYRNPGGQ 302 Query: 280 SWLNELIWREFYRHLMAFYP--------SVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYT 331 +LIWRE++ + P +C+ IPW E KD L WK+G T Sbjct: 303 HITGQLIWREYFYTMSVHNPHYAEMEANPICLN---IPWYEP----KDDSL-DRWKEGRT 354 Query: 332 GFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLL-VDWRIGEEYFMSQLLDGDLASNNG 390 GFP+IDAAMRQL GW+H+ LR ITA+FL + L + W G ++F+ LLD D + G Sbjct: 355 GFPMIDAAMRQLLAEGWLHHILRNITATFLTRGALWISWEAGVQHFLKYLLDADWSVCAG 414 Query: 391 GWQWAASTGNDS-VPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAP-HSWLD 448 W W +S+ + + +P +R DP+G ++R +LPEL N+PT Y+H P + LD Sbjct: 415 NWMWVSSSAFEKLLDSSSCTSPIALARRLDPKGEYVRRYLPELKNLPTLYVHEPWKAPLD 474 Query: 449 KND-----LSLNYPLPIVDHKKACHHTLNQYYAAKKQ 480 + +YP P++D A N + +++ Sbjct: 475 VQKECGCIVGRDYPAPMIDLAAASRANANTMNSIRQK 511 >gi|15341194|gb|AAK94667.1| cryptochrome 2b [Xenopus laevis] Length = 570 Score = 136 bits (342), Expect = 8e-30, Method: Compositional matrix adjust. Identities = 136/503 (27%), Positives = 213/503 (42%), Gaps = 55/503 (10%) Query: 5 TAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYAS 64 + SVH W R LR+ DN AL AA +++ V V+I P + F+ S Sbjct: 6 SVSSVH--WFRKGLRLHDNPALLAALRGANS-VRCVYILDPWFAASSSGGVNRWRFLLQS 62 Query: 65 LLQVQKSLSQ---KGIVFQYHQCSNFDDSI-EWLDSYCLQQRVTKLFYNRQYEINEVRRD 120 L + SL + + V + F EW V++L + E RD Sbjct: 63 LEDLDSSLRKLNSRLFVVRGQPADVFPKLFKEW--------GVSRLTFEYDSEPFGKERD 114 Query: 121 KLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLV-QADLRSLPV 179 ++ K + + ++S L L+ +++ P Q ++ + +L P Sbjct: 115 AVIMKLAKEAGVEVIVENSHTL---YDLDRVIELNGHSPPLTYKRFQAIISRMELPRRPA 171 Query: 180 PAI-RLTGPVTPSNIPRFFD--YPFQAIDPM-----------FPIGEQNALHILRKFCKE 225 P++ R + I R D Y +++ + +P GE AL L + + Sbjct: 172 PSVTRQQMEACRAEIKRNHDETYGVPSLEELGFHSENKGHAIWPGGETEALARLDRHLER 231 Query: 226 KVYYYVEQRDIPAIQGTS------QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAF 279 K + V + P + S LSPYL G LS R + RL +E + K Sbjct: 232 KAW--VANYERPRMSANSLLASPTGLSPYLRFGCLSCRLFYYRL-QELYQKVKKNSPPPL 288 Query: 280 SWLNELIWREFYRHLMAFYPSV--CMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIID 337 S +L+WREF+ P G P +I W+K+ L W +G TGFP ID Sbjct: 289 SLYGQLLWREFFYTAATNNPKFDQMEGNPI---CVQIPWDKNPKALAKWTEGKTGFPWID 345 Query: 338 AAMRQLNTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAA 396 A M QL GW+H+ R A FL + DL W G + F LLD D + N G W W + Sbjct: 346 AIMTQLRQEGWIHHLARHAVACFLTRGDLWNSWECGVKVFDELLLDADFSVNAGSWMWLS 405 Query: 397 STGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLD------KN 450 + +F + P G+R DP G +++ +LP L P++YI+ P S + K Sbjct: 406 CSAFFQQ-FFHCYCPVGFGRRTDPSGDYVKRYLPVLKAFPSRYIYEPWSAPESVQKEAKC 464 Query: 451 DLSLNYPLPIVDHKKACHHTLNQ 473 + ++YP PIV+H +A + + Sbjct: 465 IIGIDYPKPIVNHAEASRMNIER 487 >gi|323335406|gb|EGA76693.1| Phr1p [Saccharomyces cerevisiae Vin13] Length = 357 Score = 136 bits (342), Expect = 8e-30, Method: Compositional matrix adjust. Identities = 98/340 (28%), Positives = 163/340 (47%), Gaps = 29/340 (8%) Query: 60 FIYASLLQVQKSLSQKGI---VFQYHQ----CSNFDDSIEWLDSYCLQQRV---TKLFYN 109 FI +L +Q+SL++ I ++++H SN + +E+ C+ T + N Sbjct: 9 FIMGALKNLQQSLAELHIPLLLWEFHTPKSTLSNSKEFVEFFKEKCMNVSSGTGTIITAN 68 Query: 110 RQYEINEVRRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNL 169 +Y+ +E+ RD L + HR+ K + DS ++ PG I Y V+TP+ K + + Sbjct: 69 IEYQTDELYRDIRLLENEDHRLQLKYYHDSCIVAPGLITTDRGTNYSVFTPWYKKWVLYV 128 Query: 170 VQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDP-------------MFPIGEQNAL 216 + + + + P+ + F PFQ P + + E+ AL Sbjct: 129 NNYKKSTSEICHLHIIEPLKYNET--FELKPFQYSLPDEFLQYIPKSKWCLPDVSEEAAL 186 Query: 217 HILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPR----QCWNRLKEEFVDLLI 272 L+ F K Y ++D+ + GTS LS Y++ G +S R Q + + + + Sbjct: 187 SRLKDFLGTKSSKYNNEKDMLYLGGTSGLSVYITTGRISTRLIVNQAFQSCNGQIMSKAL 246 Query: 273 KPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTG 332 K S +++ E+ WR+FYRH M +P MG P+ T I+W + + W G TG Sbjct: 247 KDNSSTQNFIKEVAWRDFYRHCMCNWPYTSMGMPYRLDTLDIKWENNPVAFEKWCTGNTG 306 Query: 333 FPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIG 372 PI+DA MR+L G+++NR RMITASFL K L+ +G Sbjct: 307 IPIVDAIMRKLLYTGYINNRSRMITASFLSKKLINRLEMG 346 >gi|147906624|ref|NP_001081421.1| 6-4 photolyase [Xenopus laevis] gi|8809676|dbj|BAA97126.1| 6-4 photolyase [Xenopus laevis] gi|213625040|gb|AAI69683.1| 6-4 photolyase [Xenopus laevis] gi|213627768|gb|AAI69685.1| 6-4 photolyase [Xenopus laevis] Length = 526 Score = 136 bits (342), Expect = 9e-30, Method: Compositional matrix adjust. Identities = 135/502 (26%), Positives = 217/502 (43%), Gaps = 52/502 (10%) Query: 8 SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67 S+H W R LR+ DN AL AA + A++ +FI P + +S + F+ +L Sbjct: 5 SIH--WFRKGLRLHDNPALLAAMKDC-AELHPIFILDPWFPKNMQVSVNRWRFLIDALKD 61 Query: 68 VQKSLSQ---KGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLE 124 + ++L + + V + F + + +VT+L + E +RD +E Sbjct: 62 LDENLKKINSRLFVVRGKPAEVFPLLFK-------KWKVTRLTFEVDIEPYSRQRDAEVE 114 Query: 125 K-RLQHRV-ICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAI 182 K +H V + + +++ I + + Y F+ L + R + P + Sbjct: 115 KLAAEHDVQVIQKVSNTLYDIDRIIAENNGKPPLTYVRFQTVLAP--LGPPKRPIKAPTL 172 Query: 183 R-LTGPVTP--SNIPRFFDYPFQ---AIDPM------FPIGEQNALHILRKFCKEKV--- 227 + TP S+ + P DPM +P GE AL L K Sbjct: 173 ENMKDCHTPWKSSYDEKYGVPTLEELGQDPMKLGPHLYPGGESEALSRLDLHMKRTSWVC 232 Query: 228 -YYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELI 286 + E T+ LSPY+ G LS R W ++ + + K S +L+ Sbjct: 233 NFKKPETEPNSLTPSTTVLSPYVKFGCLSARTFWWKIADIYQGK--KHSDPPVSLHGQLL 290 Query: 287 WREFYRHLMAFYPSV--CMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLN 344 WREFY A P+ G P +++W+ + L+AW +G TG+P IDA M QL Sbjct: 291 WREFYYTTGAGIPNFNKMEGNPVC---VQVDWDNNKEHLEAWSEGRTGYPFIDAIMTQLR 347 Query: 345 TIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSV 403 T GW+H+ R A FL + DL + W G++ F LLD D + N G W W +++ Sbjct: 348 TEGWIHHLARHAVACFLTRGDLWISWEEGQKVFEELLLDADWSLNAGNWLWLSASAFFHQ 407 Query: 404 PYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDL--------SLN 455 +FR+++P GK+ D G +I+ +LP L P +YI+ P W L + Sbjct: 408 -FFRVYSPVAFGKKTDKNGDYIKKYLPILKKFPAEYIYEP--WKSPRSLQERAGCIIGKD 464 Query: 456 YPLPIVDHKKACHHTLNQYYAA 477 YP PIV+H + + AA Sbjct: 465 YPKPIVEHNVVSKQNIQRMKAA 486 >gi|332534683|ref|ZP_08410514.1| deoxyribodipyrimidine photolyase, single-strand-specific [Pseudoalteromonas haloplanktis ANT/505] gi|332035895|gb|EGI72377.1| deoxyribodipyrimidine photolyase, single-strand-specific [Pseudoalteromonas haloplanktis ANT/505] Length = 435 Score = 136 bits (342), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 110/432 (25%), Positives = 202/432 (46%), Gaps = 36/432 (8%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATP-----EQWRQHGISARQSHFIYASL 65 L WL+NDLR+TDN A+++ + + VF+ P ++Q + F+ SL Sbjct: 6 LYWLQNDLRLTDN-AIFSDLASQQCALDIVFVINPHWFKNNNYQQKSYGVHKQQFLMQSL 64 Query: 66 LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125 ++Q++L ++G + + + L + +Q + ++ Y+ Q+ + E R+ LL+ Sbjct: 65 YELQQALIERGQTLHVLE----GEPVSVLKARINEQNIDEVVYSEQFGLYEQRQINLLKA 120 Query: 126 RLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185 + + D+ L + ++ K +TPFRK + + + P+ L Sbjct: 121 HCPNVRFTGAQQDT-LFKQSDLPFDLSELPKHFTPFRK-------KVEAATSPISLSTLP 172 Query: 186 GPVTPSNIPRFFDYPFQAI--DPMFPIGEQNALHILRKFCKEKV--YYYVEQRDIPAIQG 241 + P I P + I + + G ++A L ++ + Y + + ++ Sbjct: 173 NGLLPQPITLCAKKPLERIANNGVMHGGFKSAQTHLEQYFSGLLPSTYKITRNELDGFNN 232 Query: 242 TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLN-ELIWREFYRHLMAFYPS 300 T++ S +L+ G +S RQ + + E + I +S W+ EL+WRE+++ + + Sbjct: 233 TTKFSTWLAFGCVSARQVYKAV-EAYEHNQITNESTY--WIKFELLWREYFK-----WHA 284 Query: 301 VCMGKPFIPWTEKIEWNKDSHLL----QAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMI 356 + GK + + + + + AW G T +P+++A M +LN G++ NR R I Sbjct: 285 LKAGKSLFSFKGQKQTKPLTTFMPNRFAAWCNGSTPYPLVNAIMNELNATGYISNRSRQI 344 Query: 357 TASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGK 416 AS LV +L +DWR G YF QL+D D+A+N G WQ+ A G D R FN Q Sbjct: 345 AASCLVNELGLDWRYGAAYFEQQLIDYDVAANWGNWQYIAGVGVDPRG-GRHFNIEKQTL 403 Query: 417 RFDPQGTFIRHW 428 +FDP + W Sbjct: 404 QFDPHAVYTNKW 415 >gi|195148599|ref|XP_002015258.1| GL19603 [Drosophila persimilis] gi|194107211|gb|EDW29254.1| GL19603 [Drosophila persimilis] Length = 303 Score = 136 bits (342), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 88/247 (35%), Positives = 127/247 (51%), Gaps = 14/247 (5%) Query: 242 TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSV 301 T+ LSPYL G LS R +LK + K S + +L+WREFY + A P+ Sbjct: 28 TTVLSPYLKFGCLSARIFHQQLKA-ILKRQSKHSQPPVSLIGQLLWREFYYTVAAAEPNF 86 Query: 302 --CMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITAS 359 +G + +I W + + L+AW G TG+P IDA MRQL GW+H+ R A Sbjct: 87 DRMLGNVY---CLQIPWQEQADHLEAWTHGRTGYPFIDAIMRQLRQEGWIHHLARHAVAC 143 Query: 360 FLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRF 418 FL + DL + W G+ F LLD D A N G W W +++ YFR+++P GK+ Sbjct: 144 FLTRGDLWISWEAGQRVFEQLLLDQDWALNAGNWMWLSASAFFH-QYFRVYSPVAFGKKT 202 Query: 419 DPQGTFIRHWLPELNNVPTQYIHAP--HSWLDKND----LSLNYPLPIVDHKKACHHTLN 472 DPQG +IR ++PEL P I+ P + D+ + L ++YP IV H+ + Sbjct: 203 DPQGHYIRKYVPELAKYPNGCIYEPWKATLADQREYGCVLGVDYPHRIVKHELVHKENIK 262 Query: 473 QYYAAKK 479 + AA K Sbjct: 263 RMSAAYK 269 >gi|62001759|gb|AAX58599.1| cryptochrome [Danaus plexippus] Length = 534 Score = 136 bits (342), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 126/494 (25%), Positives = 221/494 (44%), Gaps = 48/494 (9%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 + +++W R+ LR+ DN +L++A ++ + +FI E + + ++ +L Sbjct: 2 LGGNVIWFRHGLRLHDNPSLHSALEDASSPFFPIFIFDGETAGTKMVGYNRMRYLLEALN 61 Query: 67 QVQKSLSQKG---IVFQYHQCSNFDDSIE--WLDSYCLQQRVTKLFYNRQYEINEVRRDK 121 + + + G ++ + F E + + C +Q ++ R + + RD Sbjct: 62 DLDQQFRKYGGKLLMIKGRPDLIFRRLWEEFGIRTLCFEQDCEPIWRPRDASVRALCRDI 121 Query: 122 LLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYK-----VYTPFRKALIQNLVQADLRS 176 + R +H D+V+ G I QM+ + P R +L + S Sbjct: 122 GVSCR-EHVAHTLWNPDTVIKANGGIPPLTYQMFLHTVEIIGNPPRPVDDVDLNGVNFGS 180 Query: 177 LPVPAIR----LTGPVTPSNIPRFFDYPFQAIDPMFPIG-EQNALHILRK--------FC 223 LP R P ++ F + + I + +G E AL +++ FC Sbjct: 181 LPESFYREFVVFDKAPKPEDLGVFLEN--EDIRMIRWVGGETAALKQMQERLAVEYETFC 238 Query: 224 KEKVYYYVEQRDIPAIQGTS-QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWL 282 + Y+ P + G LSP L G LS R+ + L++ F + + Sbjct: 239 RGS---YLPTHGNPDLLGPPISLSPALRFGCLSVRRFYWSLQDLFQQVHQGRLASTQFIT 295 Query: 283 NELIWREFYRHLMAFYPSVCM--GKPF---IPWTEKIEWNKDSHLLQAWKQGYTGFPIID 337 +LIWRE++ + P+ G P IPW E ++ LQ WK+G TGFP +D Sbjct: 296 GQLIWREYFYTMSVNNPNYAQMSGNPICLDIPWKEP-----ENDELQRWKEGRTGFPFVD 350 Query: 338 AAMRQLNTIGWMHNRLRMITASFLVKDLL-VDWRIGEEYFMSQLLDGDLASNNGGWQWAA 396 AAMRQL T GW+H+ +R ASFL + L + W G ++F+ LLD D + G W W + Sbjct: 351 AAMRQLRTEGWLHHVVRNTVASFLTRGTLWLSWEHGLQHFLKYLLDADWSVCAGNWMWVS 410 Query: 397 STGNDS-VPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAP-HSWLDKND--- 451 S+ ++ + P G+R +P G ++R ++PEL +P +YI+ P + L+ + Sbjct: 411 SSAFEALLDSGECACPVRLGRRLEPTGHYVRRYVPELARMPGEYIYEPWRAPLEVQEAAG 470 Query: 452 --LSLNYPLPIVDH 463 + +YP P+VDH Sbjct: 471 CVIGRDYPAPVVDH 484 >gi|326793764|ref|YP_004311584.1| cryptochrome, DASH family [Marinomonas mediterranea MMB-1] gi|326544528|gb|ADZ89748.1| cryptochrome, DASH family [Marinomonas mediterranea MMB-1] Length = 458 Score = 135 bits (341), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 124/440 (28%), Positives = 194/440 (44%), Gaps = 33/440 (7%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 MS+ ++W +DLRI DN LY A D ++I ++ ++P+ +S ++ Sbjct: 1 MSMGIIWFGDDLRINDNSLLYQASREVD-RLICLYCSSPDDNNVDNSDPIRSSNTPSTFD 59 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIE------WLDSYCLQQRVTKLFYNRQYEINEVRRD 120 S+ +F++ + D S+ W+ S T F +Y I + R Sbjct: 60 NTSIKPSEHRTLFRHMGALDLDHSLRRLHNKLWVSSK--NASATIEFLVSKYPITHIYRH 117 Query: 121 ---KLLEKRLQHRVICKSFDDSVLLPPGSIL--NHAL-----QMYKVYTPFRKALIQNLV 170 + E ++ + D + G L HAL ++ + +T FRK LV Sbjct: 118 HHAGINEATTLTKLQARYTDIRWITEYGLTLFSRHALPFSLNELPESFTKFRK-----LV 172 Query: 171 QADLRSLPVPAIRLTGPVTPSNIPRFFDYP---FQAIDPMFPIGEQNA-LHILRKFCKEK 226 + + A+ P N P P F F GE A H+ F Sbjct: 173 ETIDVPKTIKAVDRLPPPVAINSPYVKTLPHTSFALDGSPFVGGESYAHAHLADYFSSGA 232 Query: 227 VYYYVEQRD-IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNEL 285 Y E R+ + +++ SP+L+ G +SPRQ N L F + + + EL Sbjct: 233 ASTYKETRNTMDDWMSSTKFSPWLAQGAISPRQVMNSLA--FYESRMGSNDSTYWIYFEL 290 Query: 286 IWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNT 345 +WRE+++ Y + K I + + + + + W G T FPI++AAM+QLNT Sbjct: 291 LWREYFQWYSMKYGARLFSKSGIH-NKTLNSSFYAERFRKWCAGSTPFPIVNAAMKQLNT 349 Query: 346 IGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPY 405 G++ NR R + AS L+ DL +DWR G YF SQL+D D+ASN G WQ+ A G D Sbjct: 350 TGYISNRARQLAASSLIYDLEIDWRYGATYFESQLIDFDVASNWGNWQYIAGVGADPRG- 408 Query: 406 FRIFNPTIQGKRFDPQGTFI 425 R FN Q + +DP FI Sbjct: 409 GRHFNLDKQTQLYDPDKAFI 428 >gi|298208129|ref|YP_003716308.1| probable bacterial cryptochrome [Croceibacter atlanticus HTCC2559] gi|83848050|gb|EAP85920.1| probable bacterial cryptochrome [Croceibacter atlanticus HTCC2559] Length = 421 Score = 135 bits (341), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 110/426 (25%), Positives = 195/426 (45%), Gaps = 26/426 (6%) Query: 20 ITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISAR-----QSHFIYASLLQVQKSLSQ 74 + DN L A N++ VIAV+ P + + ++ F+ ++ ++++L + Sbjct: 1 MNDNAVLNHAVANNNP-VIAVYCFDPRHFTTTTFGFKKTGPYRAQFLIETIKNLKETLKE 59 Query: 75 KGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ-HRVIC 133 K I + + + ++ ++Y +++ E + L+++ ++ V Sbjct: 60 KNITL----VVSLTKPEHCISTLVKNHNISAVYYQKEWTQEEQEVEHLVKESIKTSEVTL 115 Query: 134 KSFDDSVLLPPGSI-LNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPSN 192 S+ D L P I + ++ K+YT FRKA + V L +L + + Sbjct: 116 HSYYDQFLFHPKDIPFSSINEIPKIYTAFRKACEKKAVVRPLVNLEINLPKTNLLNEDYA 175 Query: 193 IPRFFDYPFQAI----DPMFPI--GEQNALHILRKFC--KEKVYYYVEQRD-IPAIQGTS 243 IP+ D+ + FP GE L + ++ + Y E R+ + + +S Sbjct: 176 IPKLKDFGLSEFTVHPNTAFPYKGGETEGLKRINEYHWDTNHIASYKETRNGMIGSEYSS 235 Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCM 303 + S +L+ G +S RQ + +K+ + +K + + ELIWR+++ ++ Y + Sbjct: 236 KYSAWLANGSISARQIYWDIKD--YEKKVKKNQSTYWMIFELIWRDYFMYISLKYGNSIF 293 Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363 I ++ WNK L+ W G T + ++A M +L GWM NR R AS+ K Sbjct: 294 KLNGIL-SKDYNWNKSKSALKQWINGTTPYDFVNANMIELKETGWMSNRGRQNVASYWAK 352 Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423 +L DWRIG YF S L+D D+ SN G W + A GND P R FN +Q KR+DP Sbjct: 353 ELQQDWRIGASYFESLLIDYDVHSNYGNWMYNAGVGND--PRDRKFNIQLQAKRYDPNRE 410 Query: 424 FIRHWL 429 + + WL Sbjct: 411 YRKLWL 416 >gi|284506737|dbj|BAI67362.1| cryptochrome [Bactrocera cucurbitae] Length = 547 Score = 135 bits (341), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 142/530 (26%), Positives = 226/530 (42%), Gaps = 70/530 (13%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKV--IAVFIATPEQWRQHGISARQSHFIYASLL 66 +++W R+ LR+ DN AL A + + I +FI E + + F+ SL Sbjct: 5 ANVLWFRHGLRLHDNPALLEAISDKSEGIALIPLFIFDGESAGTKTVGYNRMSFLLNSLA 64 Query: 67 QVQKSL---------SQKGIVFQYHQCSNFDDSIEW--LDSYCLQQRVTKLFYNRQYEIN 115 + K L S K +FQ + + F E+ L+ C +Q ++ R + Sbjct: 65 DIDKQLKAIRGASDISGKLYLFQGNPATVFRRLSEYYRLNKICFEQDCEPIWNRRDDSVR 124 Query: 116 EVRRDKLLEKRLQHRVICKSFD-DSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADL 174 + D L+ +V +D +V+ G I QM+ + + D Sbjct: 125 SLCND--LDIEAVEKVSHTLWDPRTVISTNGGIPPLTYQMFLHTVEIIGVPPRPVEDPDW 182 Query: 175 RSLPVPAIRLTGPV-----------TPSNIPRFFDYPFQAIDPMFPIGEQNAL-HILRKF 222 V ++LT + TP + + D + GEQ AL H+ + Sbjct: 183 DG--VEFLKLTDNMLMELNAFWRFPTPEDFNVYPDNVSYVAKVKWHGGEQQALLHLDERL 240 Query: 223 CKEK-----VYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKP--- 274 E+ YY Q + ++ +S +L G LS R+ + R+ + F + I+ Sbjct: 241 KVEERAFKNGYYLPNQANPNILESPKSMSAHLRFGCLSVRRFYWRVHDLFKHVQIEALRQ 300 Query: 275 ---KSGAFSWLNELIWREFYRHLMAFYP--------SVCMGKPFIPWTEKIEWNKDSHLL 323 +G +LIWRE++ + P ++C+ IPW NK+ L Sbjct: 301 RVHMAGGEHITGQLIWREYFYTMSVNNPYYDRMEGNAICLN---IPWAAP---NKEQ--L 352 Query: 324 QAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLL-VDWRIGEEYFMSQLLD 382 Q+W+ G TGFP+IDAAMRQL GW+H+ LR A+FL + L W G F+ LLD Sbjct: 353 QSWRSGQTGFPLIDAAMRQLLAEGWLHHTLRNTVATFLTRXALWQSWEHGLRXFLXYLLD 412 Query: 383 GDLASNNGGWQWAASTGNDSVPYFRIFN-PTIQGKRFDPQGTFIRHWLPELNNVPTQYIH 441 D + G W W +S+ + + + + P KR DP+G +IR ++PEL NVP +YIH Sbjct: 413 ADWSVCAGNWMWVSSSAFERLLDSSLVSCPIAFSKRLDPKGEYIRXYVPELANVPQEYIH 472 Query: 442 APHSWLDKNDLSLN--------YPLPIVDHKKACHHTLNQYYAAKKQSLL 483 P W +L N YP IVD K ++ +QSL+ Sbjct: 473 EP--WRMPQELQENCECVIGVQYPERIVDLAKVSKRNVHAMQTL-RQSLI 519 >gi|147903319|ref|NP_001082139.1| cryptochrome 2a [Xenopus laevis] gi|46249526|gb|AAH68732.1| LOC398246 protein [Xenopus laevis] Length = 568 Score = 135 bits (341), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 136/496 (27%), Positives = 212/496 (42%), Gaps = 55/496 (11%) Query: 5 TAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYAS 64 + SVH W R LR+ DN AL +A +++ V V+I P + F+ S Sbjct: 6 SVSSVH--WFRKGLRLHDNPALLSALRGANS-VRCVYILDPWFAASSSGGVNRWRFLLQS 62 Query: 65 LLQVQKSLSQ---KGIVFQYHQCSNFDDSI-EWLDSYCLQQRVTKLFYNRQYEINEVRRD 120 L + SL + + V + F EW V++L + E RD Sbjct: 63 LEDLDTSLRKLNSRLFVVRGQPADVFPRLFKEW--------GVSRLTFEYDSEPFGKERD 114 Query: 121 KLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLV-QADLRSLPV 179 ++ K + + ++S L L+ +++ P Q ++ + ++ P Sbjct: 115 AVIMKLAKEGGVEVVVENSHTL---YDLDRIIELNGHSPPLTYKRFQAIISRMEIPRRPA 171 Query: 180 PAI-RLTGPVTPSNIPRFFD--YPFQAIDPM-----------FPIGEQNALHILRKFCKE 225 P++ R + I R D Y +++ + +P GE AL L + + Sbjct: 172 PSVTRQQMEACRAEIKRNHDETYGVPSLEELGFHRENKGSAIWPGGETEALARLDRHLER 231 Query: 226 KVYYYVEQRDIPAIQGTS------QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAF 279 K + V + P + S LSPYL G LS + + RL+E + + K Sbjct: 232 KAW--VANYERPRMNANSLLASPTGLSPYLRFGCLSCKLFYYRLQELYRKVK-KNNPPPL 288 Query: 280 SWLNELIWREFYRHLMAFYPSV--CMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIID 337 S +L+WREF+ P G P +I W+K+ L W +G TGFP ID Sbjct: 289 SLFGQLLWREFFYTAATNNPKFDQMEGNPI---CVQIPWDKNPKALAKWAEGKTGFPWID 345 Query: 338 AAMRQLNTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAA 396 A M QL GW+H+ R A FL + DL W G + F LLD D + N G W W + Sbjct: 346 AIMTQLRQEGWIHHLARHAVACFLTRGDLWNSWECGVKVFDELLLDADFSVNAGSWMWLS 405 Query: 397 STGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLD------KN 450 + +F + P G+R DP G FIR +LP L P++YI+ P S + K Sbjct: 406 CSAFFQQ-FFHCYCPVGFGRRTDPNGDFIRRYLPVLKAFPSRYIYEPWSAPESVQKQAKC 464 Query: 451 DLSLNYPLPIVDHKKA 466 + ++YP PIV+H +A Sbjct: 465 IIGIDYPKPIVNHAEA 480 >gi|157115313|ref|XP_001658195.1| DNA photolyase [Aedes aegypti] gi|108883518|gb|EAT47743.1| DNA photolyase [Aedes aegypti] Length = 553 Score = 135 bits (341), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 137/518 (26%), Positives = 217/518 (41%), Gaps = 77/518 (14%) Query: 13 WLRNDLRITDNKALYAA---CHNSDAK--VIAVFIATPE--QWRQHGISARQSHFIYASL 65 W R LR+ DN AL AA C +S + + VFI P QW + G + F+ +L Sbjct: 10 WFRKGLRLHDNPALLAAIRRCRDSPQQYALRPVFILDPAIVQWLRVG--PNRWRFLQQTL 67 Query: 66 LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125 + ++L + + + D + + V+ L + E ++RD +E+ Sbjct: 68 ADLDRNLRKINSRLYVVRGNPVDVFPKLFQEW----NVSFLTFEHDIEPYSIKRDATVEE 123 Query: 126 RLQHRVICKSFDDSVLL-PPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL 184 + + + + S+ + P +IL R L + +L +P Sbjct: 124 QAKKHGVKIQIEKSLTIYDPDAILK--------MNAGRPPLTYQKYGSLASTLKIPEPVA 175 Query: 185 TGPVTPSN-IPR----------FFDYPF---------QAIDPMFPIGEQNALHILRKFCK 224 T PS+ +P+ +D P + FP GE AL L K Sbjct: 176 TPKEIPSDCVPKQDSNERKRANCYDPPLLVELGVKEEDLGECKFPGGETEALRRLEDHMK 235 Query: 225 EKVYYYVEQRDIPAIQG----TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFS 280 K + ++ + T+ LSPY+ G LS R L + V K S Sbjct: 236 RKSWVCSFEKPNTSPNSLEPSTTVLSPYVKFGCLSARLFMREL--QTVIKGQKHSQPPVS 293 Query: 281 WLNELIWREFYRHLMAFYP--------SVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTG 332 + +L+WREFY A P S+C+ P W+ + L+AW G TG Sbjct: 294 LIGQLMWREFYYCAAADEPNFDKMVGNSICLHVP---------WDSNKEFLEAWTHGRTG 344 Query: 333 FPIIDAAMRQLNTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGG 391 +P IDA MRQL GW+H+ R A FL + DL + W G+ F LLD D A N G Sbjct: 345 YPFIDAIMRQLRQEGWIHHLARHAVACFLTRGDLWISWEEGQRVFEEFLLDADWALNAGN 404 Query: 392 WQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND 451 W W +++ YFR+++P GK+ DP+G FI+ ++PEL P+ I+ P W D Sbjct: 405 WMWLSASAFFHQ-YFRVYSPVAFGKKTDPEGKFIKKYVPELAKYPSGIIYEP--WKASVD 461 Query: 452 --------LSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481 + +YP IV H++ + + A +++ Sbjct: 462 VQKKLGCIIGKDYPNRIVIHEEIHKKNIQKMTEAYRKN 499 >gi|118594165|ref|ZP_01551512.1| deoxyribodipyrimidine photolyase [Methylophilales bacterium HTCC2181] gi|118439943|gb|EAV46570.1| deoxyribodipyrimidine photolyase [Methylophilales bacterium HTCC2181] Length = 426 Score = 135 bits (341), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 124/450 (27%), Positives = 204/450 (45%), Gaps = 60/450 (13%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPE-----QWRQHGISARQSH---FIY 62 + W RNDLR+ DN AL +A +NSD ++ V I +W+ S R H F+Y Sbjct: 4 IYWFRNDLRLEDNAALNSALNNSD-HILFVHIDDDMNDAECEWQ---FSRRGQHRKIFMY 59 Query: 63 ASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKL 122 L ++Q +L G H + F + Q+ + + + IN V + + Sbjct: 60 QGLEELQLNLKSYG-----HHLNRFVGKTNLI----FQELINR------HHINSVYCESI 104 Query: 123 --LEKRLQHRVICK------SFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADL 174 E++ Q R+I + S+ S + P + + V+T FRK + + Sbjct: 105 NAFEEQAQERLIKELGVNLYSYYQSSMYMPHQLPFDIKDLPDVFTHFRKNIETTGI---- 160 Query: 175 RSLPVPAIRLTGPV--------TPSNIPRFF--DYP---FQAIDPMFPIGEQNA-LHILR 220 +P I L+G + + +N+ + DY F D F GE+ A LHI + Sbjct: 161 --VPEEPIALSGQIKNTIPILDSKTNLTQELTEDYSQSSFPISDKKFKGGERTAQLHIDQ 218 Query: 221 KFCKEKVYYYVEQRD-IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAF 279 F + Y R+ + I+ +++ SP+LS+G +S Q ++ LK + + Sbjct: 219 YFQSDYPNSYKYSRNNLMGIECSTKFSPWLSLGFISANQIYSALKR--YEQRNSANDSTY 276 Query: 280 SWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAA 339 EL+WR+++R L Y + K + + K + + WK G T I+A Sbjct: 277 WIYFELLWRDYFRFLFMKYGKIFFYKNGLGLSNK-SFQHNEEKFNEWKNGKTPSSFINAG 335 Query: 340 MRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTG 399 + +LN G++ NR+R I AS+LV +L DWR G +F QL+D D+ SN G W + A G Sbjct: 336 ISELNQTGFISNRMRQILASYLVNELACDWRAGAAWFEHQLIDYDVYSNYGNWSYIAGVG 395 Query: 400 NDSVPYFRIFNPTIQGKRFDPQGTFIRHWL 429 D R FN Q +DP G++ + W+ Sbjct: 396 TDPRG-GRHFNVDKQKNTYDPDGSYEKEWI 424 >gi|160335010|gb|ABX24913.1| cryptochrome 1 [Capsella bursa-pastoris] gi|160335012|gb|ABX24914.1| cryptochrome 1 [Capsella bursa-pastoris] gi|160335016|gb|ABX24916.1| cryptochrome 1 [Capsella bursa-pastoris] gi|160335018|gb|ABX24917.1| cryptochrome 1 [Capsella bursa-pastoris] gi|160335020|gb|ABX24918.1| cryptochrome 1 [Capsella bursa-pastoris] gi|160335022|gb|ABX24919.1| cryptochrome 1 [Capsella bursa-pastoris] gi|160335024|gb|ABX24920.1| cryptochrome 1 [Capsella bursa-pastoris] gi|160335026|gb|ABX24921.1| cryptochrome 1 [Capsella bursa-pastoris] gi|160335028|gb|ABX24922.1| cryptochrome 1 [Capsella bursa-pastoris] gi|160335030|gb|ABX24923.1| cryptochrome 1 [Capsella bursa-pastoris] gi|160335032|gb|ABX24924.1| cryptochrome 1 [Capsella bursa-pastoris] gi|160335034|gb|ABX24925.1| cryptochrome 1 [Capsella bursa-pastoris] gi|160335036|gb|ABX24926.1| cryptochrome 1 [Capsella bursa-pastoris] gi|160335038|gb|ABX24927.1| cryptochrome 1 [Capsella bursa-pastoris] gi|160335040|gb|ABX24928.1| cryptochrome 1 [Capsella bursa-pastoris] gi|160335042|gb|ABX24929.1| cryptochrome 1 [Capsella bursa-pastoris] gi|160335044|gb|ABX24930.1| cryptochrome 1 [Capsella bursa-pastoris] gi|160335046|gb|ABX24931.1| cryptochrome 1 [Capsella bursa-pastoris] gi|160335048|gb|ABX24932.1| cryptochrome 1 [Capsella bursa-pastoris] gi|160335050|gb|ABX24933.1| cryptochrome 1 [Capsella bursa-pastoris] gi|160335052|gb|ABX24934.1| cryptochrome 1 [Capsella bursa-pastoris] gi|160335056|gb|ABX24936.1| cryptochrome 1 [Capsella bursa-pastoris] gi|160335058|gb|ABX24937.1| cryptochrome 1 [Capsella bursa-pastoris] gi|160335060|gb|ABX24938.1| cryptochrome 1 [Capsella bursa-pastoris] gi|160335062|gb|ABX24939.1| cryptochrome 1 [Capsella bursa-pastoris] gi|160335064|gb|ABX24940.1| cryptochrome 1 [Capsella bursa-pastoris] gi|160335066|gb|ABX24941.1| cryptochrome 1 [Capsella bursa-pastoris] gi|160335070|gb|ABX24943.1| cryptochrome 1 [Capsella bursa-pastoris] gi|160335072|gb|ABX24944.1| cryptochrome 1 [Capsella bursa-pastoris] gi|160335074|gb|ABX24945.1| cryptochrome 1 [Capsella bursa-pastoris] gi|160335076|gb|ABX24946.1| cryptochrome 1 [Capsella bursa-pastoris] gi|160335078|gb|ABX24947.1| cryptochrome 1 [Capsella bursa-pastoris] gi|160335080|gb|ABX24948.1| cryptochrome 1 [Capsella bursa-pastoris] gi|160335082|gb|ABX24949.1| cryptochrome 1 [Capsella bursa-pastoris] gi|160335084|gb|ABX24950.1| cryptochrome 1 [Capsella bursa-pastoris] gi|160335086|gb|ABX24951.1| cryptochrome 1 [Capsella bursa-pastoris] gi|160335088|gb|ABX24952.1| cryptochrome 1 [Capsella bursa-pastoris] gi|160335090|gb|ABX24953.1| cryptochrome 1 [Capsella bursa-pastoris] gi|160335092|gb|ABX24954.1| cryptochrome 1 [Capsella bursa-pastoris] gi|160335094|gb|ABX24955.1| cryptochrome 1 [Capsella bursa-pastoris] gi|160335096|gb|ABX24956.1| cryptochrome 1 [Capsella bursa-pastoris] gi|160335098|gb|ABX24957.1| cryptochrome 1 [Capsella bursa-pastoris] gi|160335100|gb|ABX24958.1| cryptochrome 1 [Capsella bursa-pastoris] gi|160335102|gb|ABX24959.1| cryptochrome 1 [Capsella bursa-pastoris] gi|160335104|gb|ABX24960.1| cryptochrome 1 [Capsella bursa-pastoris] gi|160335106|gb|ABX24961.1| cryptochrome 1 [Capsella bursa-pastoris] gi|160335108|gb|ABX24962.1| cryptochrome 1 [Capsella bursa-pastoris] gi|160335110|gb|ABX24963.1| cryptochrome 1 [Capsella bursa-pastoris] gi|160335112|gb|ABX24964.1| cryptochrome 1 [Capsella bursa-pastoris] gi|160335114|gb|ABX24965.1| cryptochrome 1 [Capsella bursa-pastoris] gi|160335116|gb|ABX24966.1| cryptochrome 1 [Capsella bursa-pastoris] gi|160335118|gb|ABX24967.1| cryptochrome 1 [Capsella bursa-pastoris] gi|160335120|gb|ABX24968.1| cryptochrome 1 [Capsella bursa-pastoris] gi|160335122|gb|ABX24969.1| cryptochrome 1 [Capsella bursa-pastoris] gi|160335124|gb|ABX24970.1| cryptochrome 1 [Capsella bursa-pastoris] gi|160335126|gb|ABX24971.1| cryptochrome 1 [Capsella bursa-pastoris] gi|160335128|gb|ABX24972.1| cryptochrome 1 [Capsella bursa-pastoris] gi|160335130|gb|ABX24973.1| cryptochrome 1 [Capsella bursa-pastoris] gi|160335132|gb|ABX24974.1| cryptochrome 1 [Capsella bursa-pastoris] gi|160335134|gb|ABX24975.1| cryptochrome 1 [Capsella bursa-pastoris] gi|160335136|gb|ABX24976.1| cryptochrome 1 [Capsella bursa-pastoris] gi|160335138|gb|ABX24977.1| cryptochrome 1 [Capsella bursa-pastoris] gi|160335140|gb|ABX24978.1| cryptochrome 1 [Capsella bursa-pastoris] gi|160335142|gb|ABX24979.1| cryptochrome 1 [Capsella bursa-pastoris] gi|160335144|gb|ABX24980.1| cryptochrome 1 [Capsella bursa-pastoris] gi|160335146|gb|ABX24981.1| cryptochrome 1 [Capsella bursa-pastoris] gi|160335148|gb|ABX24982.1| cryptochrome 1 [Capsella bursa-pastoris] gi|160335150|gb|ABX24983.1| cryptochrome 1 [Capsella bursa-pastoris] gi|160335154|gb|ABX24985.1| cryptochrome 1 [Capsella bursa-pastoris] gi|160335156|gb|ABX24986.1| cryptochrome 1 [Capsella bursa-pastoris] gi|160335158|gb|ABX24987.1| cryptochrome 1 [Capsella bursa-pastoris] gi|160335160|gb|ABX24988.1| cryptochrome 1 [Capsella bursa-pastoris] gi|160335162|gb|ABX24989.1| cryptochrome 1 [Capsella bursa-pastoris] gi|160335164|gb|ABX24990.1| cryptochrome 1 [Capsella bursa-pastoris] gi|160335166|gb|ABX24991.1| cryptochrome 1 [Capsella bursa-pastoris] gi|160335168|gb|ABX24992.1| cryptochrome 1 [Capsella bursa-pastoris] gi|160335170|gb|ABX24993.1| cryptochrome 1 [Capsella bursa-pastoris] gi|160335172|gb|ABX24994.1| cryptochrome 1 [Capsella bursa-pastoris] gi|160335174|gb|ABX24995.1| cryptochrome 1 [Capsella bursa-pastoris] gi|160335176|gb|ABX24996.1| cryptochrome 1 [Capsella bursa-pastoris] gi|160335178|gb|ABX24997.1| cryptochrome 1 [Capsella bursa-pastoris] gi|160335180|gb|ABX24998.1| cryptochrome 1 [Capsella bursa-pastoris] gi|160335182|gb|ABX24999.1| cryptochrome 1 [Capsella bursa-pastoris] gi|160335184|gb|ABX25000.1| cryptochrome 1 [Capsella bursa-pastoris] gi|160335186|gb|ABX25001.1| cryptochrome 1 [Capsella bursa-pastoris] gi|160335188|gb|ABX25002.1| cryptochrome 1 [Capsella bursa-pastoris] gi|160335190|gb|ABX25003.1| cryptochrome 1 [Capsella bursa-pastoris] gi|261047496|gb|ACX54507.1| cryptochrome 1 [Capsella bursa-pastoris] gi|261047498|gb|ACX54508.1| cryptochrome 1 [Capsella bursa-pastoris] gi|261047500|gb|ACX54509.1| cryptochrome 1 [Capsella bursa-pastoris] gi|261047502|gb|ACX54510.1| cryptochrome 1 [Capsella bursa-pastoris] gi|261047504|gb|ACX54511.1| cryptochrome 1 [Capsella bursa-pastoris] gi|261047506|gb|ACX54512.1| cryptochrome 1 [Capsella bursa-pastoris] gi|261047508|gb|ACX54513.1| cryptochrome 1 [Capsella bursa-pastoris] Length = 209 Score = 135 bits (340), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 85/214 (39%), Positives = 121/214 (56%), Gaps = 19/214 (8%) Query: 261 NRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDS 320 N EE V+L +K + RE+ R++ +P +P + + W D Sbjct: 6 NEAGEESVNLFLK----------SIGLREYSRYISFNHP-YSHERPLLGHLKFFPWAVDE 54 Query: 321 HLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQL 380 + +AW+QG TG+P++DA MR+L GW+H+R+R++ +SF VK L + WR G +YF L Sbjct: 55 NYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFVKVLQLPWRWGMKYFWDTL 114 Query: 381 LDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYI 440 LD DL S+ GWQ+ T DS + RI NP +G +FDP G ++R WLPEL+ +PT +I Sbjct: 115 LDADLESDALGWQYITGTLPDSREFDRIDNPQFEGYKFDPNGEYVRRWLPELSRLPTDWI 174 Query: 441 H----APHSWLDKNDLSL--NYPLPIV--DHKKA 466 H AP S L + L NYP PIV D KA Sbjct: 175 HHPWNAPESVLQAAGIELGSNYPRPIVGLDEAKA 208 >gi|149916244|ref|ZP_01904765.1| Deoxyribodipyrimidine photolyase [Roseobacter sp. AzwK-3b] gi|149809904|gb|EDM69755.1| Deoxyribodipyrimidine photolyase [Roseobacter sp. AzwK-3b] Length = 494 Score = 135 bits (340), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 128/507 (25%), Positives = 199/507 (39%), Gaps = 86/507 (16%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 + W + DLRI D+ AL+ A V+ V+I PE WRQ S RQ F+ L +++ Sbjct: 2 ICWFKRDLRIADHPALHMAA--GLGPVLPVYILEPELWRQDDASGRQYAFLTECLTDLRE 59 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLD---------------------SYCLQQRVTKLFYN 109 L++ G+ D++E LD +Y +RV + Sbjct: 60 DLARAGLSL----VLRVGDAVEVLDDLRRSFGAAHLVSHEETGNGWTYARDRRVAGWARS 115 Query: 110 RQYEINEVRRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNL 169 + +EV + ++ +RL R +S D + P Sbjct: 116 QGVVWHEVPQCGVV-RRLATRDRWQSGRDGFMRAP------------------------- 149 Query: 170 VQADLRSLPVPAIRLTGPVTPSN-IPRFFDYPFQAIDPMFPIGEQNALH-ILRKFCKEKV 227 L VP + L G PS+ +P + P G + A L+ F ++ Sbjct: 150 ------QLGVP-VGLHGVEAPSDDLPDAMALGLKDSCPQRQKGGRRAGQATLQSFLHDRG 202 Query: 228 YYYVEQRDIP--AIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWL--- 282 Y P Q S++SP+L+ G LS R+ + K G W Sbjct: 203 QTYRRAMSSPLEGAQACSRISPHLAFGTLSVREAVQAGAARAAAV----KGGRDGWSGSM 258 Query: 283 ----NELIWREFYRHLMAFYPSVCMGKPFIPWTEKIE-WNKDSHLLQAWKQGYTGFPIID 337 + L WR+ + + P++ + P E + D+ LQAW +G TG P +D Sbjct: 259 RSFQSRLAWRDHFMQKLEDEPALEY-RCLHPAYEGLRPQTPDATRLQAWSKGETGLPFVD 317 Query: 338 AAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAA- 396 A MR L GW++ R+R + + L +DW+ D G W+ Sbjct: 318 ACMRSLAATGWLNFRMRSMVMAVASYHLWLDWKATGPVLARLFTD-----YEPGIHWSQV 372 Query: 397 --STGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND-LS 453 +G + RI+NP QG DP G F RHWLPEL +VP Y+ P +W L Sbjct: 373 QMQSGTTGMNTIRIYNPVKQGHDQDPTGAFTRHWLPELADVPDAYLQTPWAWGGAGRLLG 432 Query: 454 LNYPLPIVDHKKACHHTLNQYYAAKKQ 480 YP P+VD +A Q +A +++ Sbjct: 433 RRYPEPLVDVARAAKTAREQVWAVRRR 459 >gi|160335152|gb|ABX24984.1| cryptochrome 1 [Capsella bursa-pastoris] Length = 209 Score = 135 bits (340), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 85/214 (39%), Positives = 121/214 (56%), Gaps = 19/214 (8%) Query: 261 NRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDS 320 N EE V+L +K + RE+ R++ +P +P + + W D Sbjct: 6 NEAGEESVNLFLK----------SIGLREYSRYISFNHP-YSHERPLLGHLKFFPWAVDE 54 Query: 321 HLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQL 380 + +AW+QG TG+P++DA MR+L GW+H+R+R++ +SF VK L + WR G +YF L Sbjct: 55 NYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFVKVLQLPWRWGMKYFWDTL 114 Query: 381 LDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYI 440 LD DL S+ GWQ+ T DS + RI NP +G +FDP G ++R WLPEL+ +PT +I Sbjct: 115 LDADLESDALGWQYITGTLPDSREFDRIDNPXFEGYKFDPNGEYVRRWLPELSRLPTDWI 174 Query: 441 H----APHSWLDKNDLSL--NYPLPIV--DHKKA 466 H AP S L + L NYP PIV D KA Sbjct: 175 HHPWNAPESVLQAAGIELGSNYPRPIVGLDEAKA 208 >gi|148533563|gb|ABQ84983.1| antennal cryptochrome 2 [Spodoptera littoralis] Length = 625 Score = 135 bits (340), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 99/289 (34%), Positives = 136/289 (47%), Gaps = 26/289 (8%) Query: 206 PMFPIGEQNALHILRKFCKEK--VYYYVEQRDIPAIQGTSQ--LSPYLSIGVLSPRQCWN 261 P++ GE AL L + + K V + + P SQ LSPYL G LS R + Sbjct: 242 PVWIGGESEALARLERHLERKAWVASFGRPKMTPQSLLASQTGLSPYLRFGCLSTRLFYY 301 Query: 262 RLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSV--CMGKPFIPWTEKIEWNKD 319 +L E + +K S +++WREF+ P+ G P +I W K+ Sbjct: 302 QLTELYKR--VKRVRPPLSLHGQILWREFFYCAATRNPNFDRMEGNPIC---VQIPWEKN 356 Query: 320 SHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMS 378 L W G TGFP IDA M QL GW+H+ R A FL + DL + W G + F Sbjct: 357 QEALAKWASGQTGFPWIDAIMIQLREEGWIHHLARHAVACFLTRGDLWISWEEGMKVFDE 416 Query: 379 QLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQ 438 LLD D + N G W W S + +F + P G++ DP G FIR ++P L N+PT+ Sbjct: 417 LLLDADWSVNAGMWMW-LSCSSFFQQFFHCYCPVRFGRKTDPNGDFIRRYIPALKNMPTR 475 Query: 439 YIHAPHSWLDKND--------LSLNYPLPIVDHKKACH---HTLNQYYA 476 YIH P W+ + +YPLP+VDH KA + Q YA Sbjct: 476 YIHEP--WVAPESVQQSARCIIGRDYPLPMVDHSKASQVNIERIKQVYA 522 >gi|219116188|ref|XP_002178889.1| cry-dash from the cryptochrome/photolyase family [Phaeodactylum tricornutum CCAP 1055/1] gi|217409656|gb|EEC49587.1| cry-dash from the cryptochrome/photolyase family [Phaeodactylum tricornutum CCAP 1055/1] Length = 610 Score = 135 bits (340), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 144/540 (26%), Positives = 238/540 (44%), Gaps = 95/540 (17%) Query: 2 KATTAMSVHLV--WLR-NDLRITDNKALYAACHNSDAKVIAVFI----------ATPEQW 48 KAT+ S +V W R DLR+ DN AL + +++ + VF TP+ Sbjct: 42 KATSRASSQVVLHWFRHGDLRLLDNPALIHSSKTAES-CVPVFCFDDSVYGNDNRTPDTR 100 Query: 49 RQHG-------ISARQSHFIYASLLQVQKSLSQKGIVFQ---------YHQCSNFDDSIE 92 H R++ F+ S+ +++SL +G + + + ++ Sbjct: 101 APHSNDRGQLKCGPRRAQFVLDSVQDLRRSLQSRGSALYVAHGKPAQVFQRLVDAWPAVP 160 Query: 93 WLDSYCLQQRVTKLFYNRQY--EINEVRR--DKLLEKRLQHRVICKSFDDSVL----LPP 144 D+ + + R+ E N+ R +L +R + + + ++ LP Sbjct: 161 AADTAAPNGSLLTIVCQREVVREENDAVRAVQSVLRRRFPQAKVQQIWGSTMYELDDLPF 220 Query: 145 GSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAI 204 + L M +TPFR + +N LPVP +L+ P N P + + Sbjct: 221 ATDL---ANMPDTFTPFRNKVEKNCQIGT--PLPVPK-QLS---LPENFPSALKQGLEYL 271 Query: 205 DPMFPIG-------------EQNALHIL---RKFCKEKVYYYVEQRD-IPAIQGTSQLSP 247 + +G E+ LH + + + + Y E R+ + +++ SP Sbjct: 272 PTLKELGYTDAQIQQVETHDERGVLHFMVAKQPDSHDCLKDYFETRNGMLGPNYSTKFSP 331 Query: 248 YLSIGVLSPR----QCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCM 303 +L+ G +SPR QC + +EE V+ + + EL+WR+F + F+ + Sbjct: 332 WLAHGNVSPRYVAAQC-RKYEEERVE-----NKSTYWVVFELLWRDFCK----FFATKHG 381 Query: 304 GKPFIPW--TEKIE----WNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMIT 357 F P+ TE+ + W+ LQAW++G TG+P++DA MR+L G+M NR R Sbjct: 382 DAIFYPYGTTERTDRHKPWSTFGRNLQAWQEGRTGYPLVDANMRELVATGFMSNRGRQNV 441 Query: 358 ASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGW-QWAASTGNDSVPYFRIFNPTIQGK 416 ASFL +L DWR G ++F S LLD D+ SN W W A+ G R FN + Q K Sbjct: 442 ASFLAINLNHDWRCGGDFFESHLLDYDVYSN---WVNWCAAAGMTGGRLNR-FNISKQSK 497 Query: 417 RFDPQGTFIRHWLPELNNVPTQYIHAPHSWLD------KNDLSLNYPLPIVDHKKACHHT 470 +D G ++RHWLPEL VP +++H P + L ++YP PIV + HT Sbjct: 498 DYDQHGDYVRHWLPELAKVPNEFVHEPWKMTSFQQMEYECKLGVDYPNPIVPPSRPNPHT 557 >gi|260829102|ref|XP_002609501.1| hypothetical protein BRAFLDRAFT_230263 [Branchiostoma floridae] gi|229294858|gb|EEN65511.1| hypothetical protein BRAFLDRAFT_230263 [Branchiostoma floridae] Length = 514 Score = 135 bits (339), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 91/281 (32%), Positives = 136/281 (48%), Gaps = 34/281 (12%) Query: 207 MFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS------QLSPYLSIGVLSPRQCW 260 ++P GE AL L + + K + +R P + +S LSPYL G LSPR + Sbjct: 211 VWPGGETEALTRLERHLERKAWVASFER--PKMTASSLLASPTGLSPYLRFGCLSPRLFY 268 Query: 261 NRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYP--------SVCMGKPFIPWTE 312 +L E + + + S +L+WREF+ P ++C+ Sbjct: 269 KKLTELYKKV-KRSNHPPLSLYGQLLWREFFYTAATNNPNFDKMVNNTICV--------- 318 Query: 313 KIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK-DLLVDWRI 371 +I W+K+ L W +G TGFP IDA M QL GW+H+ R A FL + DL + W Sbjct: 319 QIPWDKNPEALAKWAEGQTGFPWIDAIMAQLQQEGWIHHLARHAVACFLTRGDLWISWEE 378 Query: 372 GEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPE 431 G + F LLD D + N G W W S + +F ++ P G+R DP G FIR +LP+ Sbjct: 379 GMKVFEELLLDADWSVNAGSWMW-LSCSSFFQQFFHVYCPVNFGRRTDPNGDFIRKYLPK 437 Query: 432 LNNVPTQYIHAPHSWLD------KNDLSLNYPLPIVDHKKA 466 L P +YI+ P + + K + +YPLP+V+H + Sbjct: 438 LRGFPAKYIYDPWNSPESVQKAAKCIIGKDYPLPMVNHAET 478 >gi|160335054|gb|ABX24935.1| cryptochrome 1 [Capsella bursa-pastoris] Length = 206 Score = 135 bits (339), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 83/212 (39%), Positives = 120/212 (56%), Gaps = 17/212 (8%) Query: 261 NRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDS 320 N EE V+L +K + RE+ R++ +P +P + + W D Sbjct: 6 NEAGEESVNLFLK----------SIGLREYSRYISFNHP-YSHERPLLGHLKFFPWAVDE 54 Query: 321 HLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQL 380 + +AW+QG TG+P++DA MR+L GW+H+R+R++ +SF VK L + WR G +YF L Sbjct: 55 NYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFVKVLQLPWRWGMKYFWDTL 114 Query: 381 LDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYI 440 LD DL S+ GWQ+ T DS + RI NP +G +FDP G ++R WLPEL+ +PT +I Sbjct: 115 LDADLESDALGWQYITGTLPDSREFDRIDNPQFEGYKFDPNGEYVRRWLPELSRLPTDWI 174 Query: 441 H----APHSWLDKNDLSL--NYPLPIVDHKKA 466 H AP S L + L NYP PIV +A Sbjct: 175 HHPWNAPESVLQAAGIELGSNYPRPIVGLDEA 206 >gi|147901097|ref|NP_001081129.1| cryptochrome 1 (photolyase-like) [Xenopus laevis] gi|47938667|gb|AAH72120.1| Cry1-A protein [Xenopus laevis] Length = 616 Score = 135 bits (339), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 136/493 (27%), Positives = 205/493 (41%), Gaps = 50/493 (10%) Query: 7 MSVHLV-WLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASL 65 M V+ V W R LR+ DN AL +D V V+I P + + F+ L Sbjct: 1 MGVNAVHWFRKGLRLHDNPALRECIQGADT-VRCVYILDPWFAGSSNVGINRWRFLLQCL 59 Query: 66 LQVQ---KSLSQKGIVFQYHQCSNFDDSI-EWLDSYCLQQRVTKLFYNRQYEINEVRRDK 121 + + L+ + V + F EW ++TKL E RD Sbjct: 60 EDLDANLRKLNSRLFVIRGQPADVFPRLFKEW--------KITKLSIEYDSEPFGKERDA 111 Query: 122 LLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLV-QADLRSLPVP 180 ++K + S L L+ +++ P Q L+ + D +PV Sbjct: 112 AIKKLASEAGVEVIVRISHTL---YDLDKIIELNGGQPPLTYKRFQTLISKMDPLEIPVE 168 Query: 181 AI------RLTGPVTPS-----NIPRFFDYPFQA---IDPMFPIGEQNALHILRKFCKEK 226 I + T PV+ +P + F ++P GE AL L + + K Sbjct: 169 TITAEVMEKCTTPVSDDHDEKYGVPSLEELGFDTEGLPSAVWPGGETEALTRLERHLERK 228 Query: 227 VYYYVEQRDI----PAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWL 282 + +R + T+ LSPYL G LS R + +L + + + K S S Sbjct: 229 AWVANFERPRMNANSLLASTTGLSPYLRFGCLSCRLFYFKLTDLYKKVK-KNSSPPLSLY 287 Query: 283 NELIWREFYRHLMAFYPSV--CMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAM 340 +L+WREF+ P G P +I W+++ L W +G TGFP IDA M Sbjct: 288 GQLLWREFFYTAATNNPRFDKMDGNPIC---VQIPWDRNPEALAKWAEGRTGFPWIDAIM 344 Query: 341 RQLNTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTG 399 QL GW+H+ R A FL + DL + W G + F LLD D + N G W W S Sbjct: 345 TQLRQEGWIHHLARHAVACFLTRGDLWISWEEGMKVFEELLLDADWSVNAGSWMW-LSCS 403 Query: 400 NDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLD------KNDLS 453 + +F + P GKR DP G +IR +LP L P +YI+ P + + K + Sbjct: 404 SFFQQFFHCYCPVGFGKRTDPNGDYIRRYLPILKGFPPKYIYDPWNAPETVQKAAKCIIG 463 Query: 454 LNYPLPIVDHKKA 466 +NYP P+V+H +A Sbjct: 464 VNYPKPMVNHAEA 476 >gi|89054364|ref|YP_509815.1| deoxyribodipyrimidine photo-lyase type I [Jannaschia sp. CCS1] gi|88863913|gb|ABD54790.1| deoxyribodipyrimidine photo-lyase family protein (cryptochrome) [Jannaschia sp. CCS1] Length = 517 Score = 135 bits (339), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 130/481 (27%), Positives = 190/481 (39%), Gaps = 64/481 (13%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 LV + DLR+ DN AL A + D + VF+A PE W Q SARQ F+ SL ++ Sbjct: 5 LVLFKRDLRVQDNPALALAA-SRDGAALPVFVAEPEAWAQPDASARQWRFVAESLEGLRA 63 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130 L+ G + D + L C V ++ I E L R Sbjct: 64 DLAALGAPLIVRR----GDMMAVLGGLCATHDVGEII-----SIEET--GNLWSYGRDRR 112 Query: 131 VICKSFDDSVLLP--PGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188 + + V+ P + L + R+A+++ +PVP Sbjct: 113 LAAWARGAGVIWTEVPQLGVQRRLVNRDGWARDRQAVMRQA------QVPVPEGLRGVSE 166 Query: 189 TPSNIPRFFDYPFQAIDPM---FPIGEQNALHILRKFCKEKVYYYVEQRDIP--AIQGTS 243 P +IP D A DP G L L F + Y P S Sbjct: 167 EPGSIPDARDLAL-AFDPCPGRQAGGRDGGLATLASFLTARGQEYRRAMSSPLDGAAACS 225 Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNEL-------IWREFYRHLMA 296 +LSP+L+ G LS R+ + + ++ K WL L WR+ + + Sbjct: 226 RLSPHLAWGTLSSREVLHGMAARRAEV----KGTRDGWLGSLRSFEARVAWRDHFMQKLE 281 Query: 297 FYPSV---CMGKPFIPWTEKIEWN-KDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNR 352 P++ C+ + E + N D+ L AW++G TG P +DA MR L GW++ R Sbjct: 282 DQPAMEIRCLHSAY----EDLRPNVPDATRLSAWEKGETGIPFVDACMRSLIATGWINFR 337 Query: 353 LRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQW------AASTGNDSVPYF 406 +R + A+ L +DWR + D G W A +TG +++ Sbjct: 338 MRAMLAAVASYHLWLDWRRTGPHLARMFTD-----YEPGIHWPQMQMQAGTTGMNTI--- 389 Query: 407 RIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND-----LSLNYPLPIV 461 RI+NP QG DP GTF R W PEL VP + P +W + L YP PIV Sbjct: 390 RIYNPVKQGLDHDPTGTFTRTWCPELREVPDACLQTPWAWAETGSPAARRLGRRYPAPIV 449 Query: 462 D 462 D Sbjct: 450 D 450 >gi|194673414|ref|XP_585942.4| PREDICTED: cryptochrome 2-like [Bos taurus] gi|297483449|ref|XP_002693610.1| PREDICTED: cryptochrome 2-like [Bos taurus] gi|296479702|gb|DAA21817.1| cryptochrome 2-like [Bos taurus] Length = 585 Score = 135 bits (339), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 144/508 (28%), Positives = 212/508 (41%), Gaps = 78/508 (15%) Query: 2 KATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATP----------EQWRQH 51 + A SVH W R LR+ DN AL AA + V V+I P +WR Sbjct: 15 RGDGASSVH--WFRKGLRLHDNPALLAAVRGAHC-VRCVYILDPWFAASSSVGINRWRMM 71 Query: 52 GISARQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQ 111 A QS + LQ +K S G H +EW VT+L + Sbjct: 72 KNEATQS-LLRVLTLQWRKLAS--GGQLPCH--------MEW--------GVTRLTFEYD 112 Query: 112 YEINEVRRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLV- 170 E RD + K + + ++S L L+ +++ P Q ++ Sbjct: 113 SEPFGKERDTAIMKMAKEAGVEVVTENSHTL---YDLDKIIELNGQKPPLTYKRFQAIIS 169 Query: 171 QADLRSLPVPAIR------LTGPVTPS-----NIPRF--FDYPFQAIDP-MFPIGEQNAL 216 + +L PV ++ + S +P +P + + P ++ GE AL Sbjct: 170 RMELPRKPVGSVTSQQMEGCRAEIQESHDETYGVPSLEELGFPTEGLGPAVWQGGETEAL 229 Query: 217 HILRKFCKEKVYYYVEQRDIPAIQGTS------QLSPYLSIGVLSPRQCWNRLKEEFVDL 270 L K + K + V + P + S LSPYL G LS R + RL DL Sbjct: 230 ARLDKHLERKAW--VANYERPRMNANSLLASPTGLSPYLRFGCLSCRLFYYRL----WDL 283 Query: 271 LIKPKSGA---FSWLNELIWREFYRHLMAFYPSV--CMGKPFIPWTEKIEWNKDSHLLQA 325 K K + S +L+WREF+ P G P +I W+++ L Sbjct: 284 YKKVKRNSTPPLSLFGQLLWREFFYTAATNNPRFDRMEGNPIC---IQIPWDRNPEALAK 340 Query: 326 WKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGD 384 W +G TGFP IDA M QL GW+H+ R A FL + DL V W G F LLD D Sbjct: 341 WAEGKTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWVSWESGVRVFDELLLDAD 400 Query: 385 LASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPH 444 + N G W W + + +F + P G+R DP G +IR +LP+L P++YI+ P Sbjct: 401 FSVNAGSWMWLSCSAFFQQ-FFHCYCPVGFGRRTDPSGDYIRRYLPKLKGFPSRYIYEPW 459 Query: 445 SWLD------KNDLSLNYPLPIVDHKKA 466 + + K + ++YP PIV+H +A Sbjct: 460 NAPESIQKAAKCVIGVDYPRPIVNHAEA 487 >gi|167736303|dbj|BAG07408.1| cryptochrome-m [Riptortus pedestris] Length = 538 Score = 135 bits (339), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 129/508 (25%), Positives = 208/508 (40%), Gaps = 72/508 (14%) Query: 8 SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67 +VH W R LR+ DN +L N +FI P + + F+ L Sbjct: 6 TVH--WFRKGLRLHDNPSLRHGL-NGAKTFRCIFILDPWFANASNVGINKWRFLLQCLED 62 Query: 68 VQKSL---SQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLE 124 + +SL + + V + ++ + CL F VR ++ Sbjct: 63 LDRSLMKLNSRLFVIRGQPADILPKLLKEWGTTCLT------FEEDPEPFGRVRDQNIM- 115 Query: 125 KRLQHRVICKSFDDSVLLPPGSILNHALQMYKVY-------TPFRKALIQNLVQADLRSL 177 +C+ + +V+ S++ H L + P Q++V A + S Sbjct: 116 ------AMCRGMNITVI----SLVAHTLYKLECIIERNGGRAPLTYHQFQSVV-ASMESP 164 Query: 178 PVPAIRLTGPVTPS-------------NIPRFFDYPFQA---IDPMFPIGEQNALHILRK 221 P+P +T V +P + F + ++ GE AL L + Sbjct: 165 PLPVPPVTSTVVGDAVSPISDDHDEKYGVPTLEELGFDTEGLLPGVWQGGESEALSRLER 224 Query: 222 FCKEKVYY-------YVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKP 274 + K + Q +P+ G LSPYL G LS R + +L + + IK Sbjct: 225 HLERKAWVASFGKPKMTPQSLLPSQTG---LSPYLRFGCLSTRLFYYQLNDLYRK--IKK 279 Query: 275 KSGAFSWLNELIWREFYRHLMAFYPSV--CMGKPFIPWTEKIEWNKDSHLLQAWKQGYTG 332 S +++WREF+ P+ +G P ++ W+K+ L W G TG Sbjct: 280 AVPPLSLHGQVLWREFFYCAATKNPNFDRMIGNPI---CVQVPWDKNPEALAKWANGQTG 336 Query: 333 FPIIDAAMRQLNTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGG 391 FP IDA M QL GW+H+ R A FL + DL + W G + F LLD D + N G Sbjct: 337 FPWIDAIMTQLREEGWIHHLARHAVACFLTRGDLWISWEEGMKVFEELLLDADWSVNAGM 396 Query: 392 WQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLD--- 448 W W S + +F + P G++ DP G +IR +LP L N+PT+YIH P + + Sbjct: 397 WMW-LSCSSFFQQFFHCYCPVRFGRKADPNGDYIRKYLPVLKNMPTKYIHEPWNCPESVQ 455 Query: 449 ---KNDLSLNYPLPIVDHKKACHHTLNQ 473 K + ++YPLP+++H H + + Sbjct: 456 KAAKCTIGVDYPLPMLNHSVVSKHNIER 483 >gi|331227925|ref|XP_003326630.1| cryptochrome DASH [Puccinia graminis f. sp. tritici CRL 75-36-700-3] gi|309305620|gb|EFP82211.1| cryptochrome DASH [Puccinia graminis f. sp. tritici CRL 75-36-700-3] Length = 596 Score = 134 bits (338), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 158/553 (28%), Positives = 231/553 (41%), Gaps = 122/553 (22%) Query: 8 SVHLVWLRNDLRITDNKAL----YAACHNSDA----KV------IAVF------IATPEQ 47 S+ + RNDLR+ DN L A DA KV + VF ++ E Sbjct: 7 SLTIALFRNDLRLHDNPILTHSHLATVKEGDAVRRNKVSEYVLPLYVFDERQIELSGLEG 66 Query: 48 WRQHGISARQS------------HFIYASLLQVQKSLSQKG----IVFQYHQCSNFDDSI 91 +RQHG AR +F+ S+ +++ L + G + F + + I Sbjct: 67 YRQHGGPARTEVCGFWRTGSHRLNFLCQSVYELKHQLKKSGSDLLVRFGVVEATTLK-II 125 Query: 92 EWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK---RLQHRVICKSFDDSVLLPPGSIL 148 E L V ++ ++ EV +K L K L H+V F L+ P + Sbjct: 126 EELQRNGFS--VDHVYMAKEVAFEEVGTEKRLAKLLGELAHKVPLTLFHSRSLVHPDDLP 183 Query: 149 NHALQMYKVYTPFRKALIQNLVQADLRS--LPVPAIRLTGPVTPSNI------PRF---- 196 + VYTPFR + +++L L LP+P P P I P + Sbjct: 184 FTINKTPDVYTPFR-SKVESLPADQLCRPLLPLPEKLQPFPALPETILKAAPEPGYSGSL 242 Query: 197 -----FDYPFQAI------------------------DP--MFPI--GEQNALHILR--- 220 FD F + DP FP GE AL L Sbjct: 243 CEGQGFDEVFARLVKPLLSNPDIPHDPKEANTQDYKPDPRSAFPYQGGESEALRRLDDYF 302 Query: 221 -KFCKEKVYYYVEQRD-IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGA 278 K + V Y R+ + Q +++ SP+L+ G +SPR+ + L + + Sbjct: 303 FKGNQPPVRSYKTTRNGLLGHQYSTKFSPFLAFGCISPRKIIHSLWDH--EAKFGSNKDT 360 Query: 279 FSWLNELIWREFYRHL-MAFYPSVCMGKPF------IPWTEKIEW---NKDSHLLQ---- 324 + L E++WR+++ + F + + K F T+K+ + KD + Q Sbjct: 361 YWVLFEILWRDYFIFISQKFGRRLFLIKGFEGRIDPKGATKKLSYWKPFKDEKMNQQSKG 420 Query: 325 ----------AWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEE 374 AW +G TG P IDA M +L G+M NR R ASFL KDL +DWRIG E Sbjct: 421 KETPVDRNALAWLRGKTGVPFIDANMIELRESGFMSNRGRQNVASFLAKDLELDWRIGAE 480 Query: 375 YFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNN 434 +F S LLD D SN G WQ+ A GND R FNP Q K +D QG +++HW+P+L + Sbjct: 481 WFESALLDYDPCSNYGNWQYVAGVGNDPRTS-RQFNPIKQAKDYDSQGDYVKHWIPDLKS 539 Query: 435 VPTQYIHAPHSWL 447 PT I +P WL Sbjct: 540 FPTNRIQSP--WL 550 >gi|262275892|ref|ZP_06053701.1| deoxyribodipyrimidine photolyase single-strand-specific [Grimontia hollisae CIP 101886] gi|262219700|gb|EEY71016.1| deoxyribodipyrimidine photolyase single-strand-specific [Grimontia hollisae CIP 101886] Length = 427 Score = 134 bits (338), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 123/435 (28%), Positives = 191/435 (43%), Gaps = 40/435 (9%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISAR-----QSHFIYASL 65 L W R+DLR+ DN AL +K + VF+ PE +R +R + F+Y SL Sbjct: 4 LFWFRHDLRLADNPALITLSRRC-SKALMVFVINPEWFRPAHYQSRHLGRFREEFLYQSL 62 Query: 66 LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125 +++ L + + + + + C + + + + E ++ L + Sbjct: 63 RSLERELKKH----KQRLVVKVGNPLLVIPDLCKKHGIDMVAMTDHPGVYERQQVAYLSR 118 Query: 126 RLQHRVICKSFDDSVLLPPGSILNHALQMY-KVYTPFRKALIQNLVQADLRSLPVPAIRL 184 L+ V S +S L S L Y ++ FRK + + Q L +P+ A Sbjct: 119 TLRSEV---SVSESFTLFLRSQLAFDKTTYPATFSQFRKHVEK---QNILPCIPISA--- 169 Query: 185 TGPVTPSNIPRFFD--------YPFQAIDPMFPIGEQNALHILRKFC--KEKVYYYVEQR 234 P ++P D F + GE + L +F + + Y + R Sbjct: 170 -----PDSLPTVIDERRDIWGGQEFVYDLTPYHGGEDAGMVQLNQFFWKTQGLKNYKQTR 224 Query: 235 -DIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRH 293 D+ Q +S+LS +L+ G +SPR L + S EL+WRE+++ Sbjct: 225 NDLDGWQFSSRLSAWLANGSISPRTVAAELDN--YEYRHGRSDSTQSMYAELLWREYFQW 282 Query: 294 LMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRL 353 +M +Y + I T + +AW+QG T FPI++A MRQLN G++ NR Sbjct: 283 MMHYYGADMFAFAGIKKTRPLT-TYYCQNYKAWEQGTTEFPIVNACMRQLNQTGYISNRG 341 Query: 354 RMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTI 413 R I AS LV +L VDWR G YF QL+D D+A+N G WQ+ A G D R FN Sbjct: 342 RQIVASCLVNELGVDWRFGAAYFEQQLIDFDVATNYGNWQYLAGVGADPRGQ-RHFNLEK 400 Query: 414 QGKRFDPQGTFIRHW 428 Q +DP G F+ W Sbjct: 401 QADVYDPNGEFVERW 415 >gi|264678127|ref|YP_003278034.1| DNA photolyase, FAD-binding protein [Comamonas testosteroni CNB-2] gi|262208640|gb|ACY32738.1| DNA photolyase, FAD-binding protein [Comamonas testosteroni CNB-2] Length = 473 Score = 134 bits (338), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 126/453 (27%), Positives = 197/453 (43%), Gaps = 56/453 (12%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVF----IATPEQWRQHGISARQSHFIY 62 MS L+WLRNDLR+ D L+AAC ++ V I +W I + ++ Sbjct: 43 MSTVLLWLRNDLRLHDQPVLHAACRMGAQYLLPVLCLPDIQARTRWGFARIGQHRRTWLT 102 Query: 63 ASLLQVQKSL----SQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVR 118 ++ + ++ SQ I+ + + + + + + Q E+ +R Sbjct: 103 KTIQNLAENFHELRSQLLILNAPAAKALPALAQALGADIIVCEDIAA--PDEQAEVEALR 160 Query: 119 RDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLP 178 L + H S LL + Q+ V+TPFR+A+ +Q LP Sbjct: 161 ASGLQVHTVWH---------SSLLHQDQLPWPVRQLPDVFTPFRQAVEHAKLQP-YPPLP 210 Query: 179 VPAIRLTGPVTPSNIPRFF-----------DYPFQAIDPMFPI-----GEQNALHILRKF 222 VP P P +IP + P ++D I GE AL LR++ Sbjct: 211 VPEAL---PRVPPHIPNEYLREQIPALSALAGPSPSLDTRSAIALLQGGESAALAHLRQY 267 Query: 223 CKEKV--YYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFS 280 + Y + + + +S+ S +L+ G LSPRQ + L++ F +S + Sbjct: 268 LARGLPHSYKRTRNGLVGLDYSSKWSLWLATGALSPRQAYAELRQ-FEATRGATESSYWL 326 Query: 281 WLNELIWREFYR-----HLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPI 335 W EL+WR+++R H A Y + +G ++ D AW G TG + Sbjct: 327 WF-ELLWRDYFRFLHMQHGRALYRARGLGP-------ELATPHDDQNFAAWCSGQTGKTL 378 Query: 336 IDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWA 395 +DAAMR+L G++ NRLR + AS+L+ DL DWR G +F SQLLD D+ SN G W + Sbjct: 379 VDAAMRELAATGYLSNRLRQVAASYLIHDLGCDWRAGAAWFESQLLDYDVYSNQGNWLYI 438 Query: 396 ASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHW 428 A G D R F+P Q +D G + R W Sbjct: 439 AGRGTDPQG-GRRFDPVKQAATYDADGAYQRLW 470 >gi|307826660|gb|ADN94465.1| cryptochrome 2 [Helicoverpa armigera] Length = 648 Score = 134 bits (338), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 105/322 (32%), Positives = 146/322 (45%), Gaps = 37/322 (11%) Query: 184 LTGPVTPSN--------IPRFFDYPFQAID---PMFPIGEQNALHILRKFCKEK--VYYY 230 L G TP N +P + F+ P++ GE AL L + + K V + Sbjct: 208 LNGATTPLNDDHDDRFGVPTLEELGFETEGLKPPVWIGGESEALARLERHLERKAWVASF 267 Query: 231 VEQRDIPAIQGTSQ--LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWR 288 + P SQ LSPYL G LS R + +L E + +K S +++WR Sbjct: 268 GRPKMTPQSLLASQTGLSPYLRFGCLSTRLFYYQLTELYKR--VKRVRPPLSLHGQILWR 325 Query: 289 EFYRHLMAFYPSV--CMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTI 346 EF+ P+ G P +I W K+ L W G TGFP IDA M QL Sbjct: 326 EFFYCAATRNPNFDRMEGNPIC---VQIPWEKNQEALAKWASGQTGFPWIDAIMIQLREE 382 Query: 347 GWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPY 405 GW+H+ R A FL + DL + W G + F LLD D + N G W W S + + Sbjct: 383 GWIHHLARHAVACFLTRGDLWISWEEGMKVFDELLLDADWSVNAGMWMW-LSCSSFFQQF 441 Query: 406 FRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND--------LSLNYP 457 F + P G++ DP G FIR ++P L N+PT+YIH P W+ + +YP Sbjct: 442 FHCYCPVRFGRKTDPNGDFIRRYIPALKNMPTRYIHEP--WVAPEAVQQSARCIIGRDYP 499 Query: 458 LPIVDHKKACH---HTLNQYYA 476 +P+VDH KA + Q YA Sbjct: 500 MPMVDHSKASQVNIERIKQVYA 521 >gi|301609141|ref|XP_002934138.1| PREDICTED: cryptochrome-2 [Xenopus (Silurana) tropicalis] Length = 531 Score = 134 bits (337), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 93/282 (32%), Positives = 134/282 (47%), Gaps = 22/282 (7%) Query: 207 MFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS------QLSPYLSIGVLSPRQCW 260 ++P GE AL L + + K + V + P + S LSPYL G LS R + Sbjct: 174 IWPGGETEALARLDRHLERKAW--VANYERPRMNANSLLASPTGLSPYLRFGCLSCRLFY 231 Query: 261 NRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSV--CMGKPFIPWTEKIEWNK 318 RLKE + + K S +L+WREF+ P G P +I W+K Sbjct: 232 YRLKELYKKVK-KNSPPPLSLYGQLLWREFFYTAATNNPKFDQMEGNPI---CVQIPWDK 287 Query: 319 DSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFM 377 + L W +G TGFP IDA M QL GW+H+ R A FL + DL W G + F Sbjct: 288 NPKALAKWAEGKTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWNSWECGVKVFD 347 Query: 378 SQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPT 437 LLD D + N G W W + + +F + P G+R DP G ++R +LP L P+ Sbjct: 348 ELLLDADFSVNAGSWMWLSCSAFFQQ-FFHCYCPVGFGRRTDPSGDYVRRYLPVLKAFPS 406 Query: 438 QYIHAPHSWLD------KNDLSLNYPLPIVDHKKACHHTLNQ 473 +YI+ P S + K + ++YP PIV+H +A + + Sbjct: 407 RYIYEPWSAPESVQKEAKCIIGIDYPKPIVNHAEASRMNIER 448 >gi|170070074|ref|XP_001869456.1| cryptochrome 2 [Culex quinquefasciatus] gi|167866000|gb|EDS29383.1| cryptochrome 2 [Culex quinquefasciatus] Length = 828 Score = 134 bits (337), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 139/495 (28%), Positives = 203/495 (41%), Gaps = 80/495 (16%) Query: 8 SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67 +VH W R LR+ DN AL ++ A + VF+ P + + F+ L Sbjct: 50 TVH--WFRKGLRLHDNPALREGLKDA-ASLRCVFVIDPWFAGSSNVGINKWRFLLQCLED 106 Query: 68 VQKSLSQ---KGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLE 124 + ++L Q + V + + + CL F +VR + E Sbjct: 107 LDRNLRQLNSRLFVIRGQPADALPKLFKEWGTTCL------TFEEDPEPFGKVRDHNISE 160 Query: 125 KRLQHRVICKSFDDSVLLPPGSILNHALQMYKVY-----TPFRKALIQNLVQADLRSL-- 177 +CK + V+ S ++H L YK+ R L N QA + S+ Sbjct: 161 -------MCKELNIDVI----SAVSHTL--YKLERIIEKNNGRAPLTYNQFQAIIASMDA 207 Query: 178 ---PVPAIRLTG---PVTPS--------NIPRFFDYPFQAIDPMFPI---GEQNALHILR 220 P PAI L VTP +P + F+ PI GE AL L Sbjct: 208 PPQPEPAITLAAIGRAVTPQCDDHDDKYGVPTLEELGFETEGLKPPIWVGGETEALARLE 267 Query: 221 KFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFS 280 + + + LSPYL G LS R + +L + + IK S Sbjct: 268 RH----------------LGTQTGLSPYLRFGCLSTRLFYYQLTDLYKK--IKKAYPPLS 309 Query: 281 WLNELIWREFYRHLMAFYPSV--CMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDA 338 +L WREF+ P+ G P +I W++++ L W G TGFP IDA Sbjct: 310 LHGQLFWREFFYCAATKNPNFDKMAGNPIC---VQIPWDRNAEALAKWASGQTGFPWIDA 366 Query: 339 AMRQLNTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAAS 397 M QL GW+H+ R A FL + DL + W G + F LLD D + N G W W S Sbjct: 367 IMTQLREEGWIHHLARHAVACFLTRGDLWISWEEGMKVFEELLLDADWSVNAGMWMW-LS 425 Query: 398 TGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLD------KND 451 + +F + P G++ DP G +IR +LP L N PT+YIH P + + + Sbjct: 426 CSSFFQQFFHCYCPVKFGRKADPNGDYIRRYLPVLKNFPTRYIHEPWNAPESVQRAARCI 485 Query: 452 LSLNYPLPIVDHKKA 466 + NYPLP+V+H A Sbjct: 486 IGKNYPLPMVNHAIA 500 >gi|261856009|ref|YP_003263292.1| cryptochrome, DASH family [Halothiobacillus neapolitanus c2] gi|261836478|gb|ACX96245.1| cryptochrome, DASH family [Halothiobacillus neapolitanus c2] Length = 447 Score = 134 bits (337), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 126/468 (26%), Positives = 202/468 (43%), Gaps = 58/468 (12%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFI-----ATPEQWRQHGISARQSHFI 61 MS L W R DLR+ DN+ AC +DA ++ V+I P +W I + + Sbjct: 1 MSRVLYWFRQDLRLRDNRCFIRACDQADA-LLPVYILDPAMEQPTRWGFDRIGPHRRVVL 59 Query: 62 YASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDK 121 +L + + L Q+G C ++ L + Q + ++ E Sbjct: 60 GQALRGLDRQLRQRGSGL----CLLQGQPVDQLLAMVRQGAIDTVWVEDIAAPQERALVD 115 Query: 122 LLEKRLQH-RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVP 180 L++ L+ V + S L+ P + ++ +TPFRK + Q V + P P Sbjct: 116 ALKQSLEPLGVSVYTGWQSSLIAPDDLPFAIDRLPDSFTPFRKRVEQAAVCIEH---PYP 172 Query: 181 AIRLTGPVTPSNIPRFFDYPFQAIDPMF----------------------------PIGE 212 A P P ++P YP +ID F IG Sbjct: 173 APDAV-PPWPESVP----YPTASIDAQFDALCGASTRPAVDARSAFPCDDPDCSVDEIGA 227 Query: 213 QNALHILRKFCKEKVYYYVEQRD-IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLL 271 Q H+ + F + + Y R+ + +S+ SP+L++GVLS RQ + + + Sbjct: 228 QR--HLDQYFARGLPHTYKATRNQLIGKDYSSKWSPFLALGVLSARQVY--AARQHFEQA 283 Query: 272 IKPKSGAFSWLN-ELIWREFYRHL-MAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQG 329 G + WL EL+WR+++R L + + + + P ++ D+ + WK Sbjct: 284 RGANEGTY-WLRFELLWRDYFRFLHLKYGRRLYHARGLAP--DRPAPTHDADRFERWKNA 340 Query: 330 YTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNN 389 TG IDAAM +L+ G++ NR+R + AS+L+ DL DWR G +F SQL+D D+ SN Sbjct: 341 DTGHAFIDAAMTELSRTGYLSNRMRQVVASYLIHDLGCDWRAGAAWFESQLVDYDVYSNQ 400 Query: 390 GGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPT 437 G W + A G D R FNP Q + +DP G + WL +P Sbjct: 401 GNWLYLAGYGTDPRGS-RRFNPDKQAQDYDPGGAYRALWLSGTAAMPA 447 >gi|296217987|ref|XP_002755255.1| PREDICTED: cryptochrome-2 [Callithrix jacchus] Length = 593 Score = 134 bits (337), Expect = 4e-29, Method: Compositional matrix adjust. Identities = 141/503 (28%), Positives = 208/503 (41%), Gaps = 73/503 (14%) Query: 6 AMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASL 65 A SVH W R LR+ DN AL AA + V V+I P + + F+ SL Sbjct: 22 ASSVH--WFRKGLRLHDNPALLAAVRGARC-VRCVYILDPWFAASSSVGINRWRFLLQSL 78 Query: 66 LQVQKSLSQ---KGIVFQYHQCSNFDDSI-EWLDSYCLQQRVTKLFYNRQYEINEVRRDK 121 + SL + + V + F EW VT+L + E RD Sbjct: 79 EDLDTSLRKLNSRLFVVRGQPADVFPRLFKEW--------GVTRLTFEYDSEPFGKERDA 130 Query: 122 LLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLV-QADLRSLPVP 180 + K + + ++S L L+ +++ P Q ++ + +L PV Sbjct: 131 AIMKMAKEAGVEVVTENSHTL---YDLDRIIELNGQKPPLTYKRFQAIISRMELPKKPV- 186 Query: 181 AIRLTGPVTPS-----------------NIPRF--FDYPFQAIDP-MFPIGEQNALHILR 220 G VT +P +P + + P ++ GE AL L Sbjct: 187 -----GSVTSQQMESCRAEIQENHDETYGVPSLEELGFPTEGLGPAVWQGGETEALARLD 241 Query: 221 KFCKEKVYYYVEQRDIPAIQGTS------QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKP 274 K + K + V + P + S LSPYL G LS R + RL DL K Sbjct: 242 KHLERKAW--VANYERPRMNANSLLASPTGLSPYLRFGCLSCRLFYYRL----WDLYKKV 295 Query: 275 KSGA---FSWLNELIWREFYRHLMAFYPSV--CMGKPFIPWTEKIEWNKDSHLLQAWKQG 329 K + S +L+WREF+ P G P +I W+++ L W +G Sbjct: 296 KRNSTPPLSLFGQLLWREFFYTAATNNPRFDRMEGNPIC---IQIPWDRNPEALAKWAEG 352 Query: 330 YTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASN 388 TGFP IDA M QL GW+H+ R A FL + DL V W G F LLD D + N Sbjct: 353 KTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWVSWESGVRVFDELLLDADFSVN 412 Query: 389 NGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLD 448 G W W + + +F + P G+R DP G +IR +LP+L P++YI+ P + + Sbjct: 413 AGSWMWLSCSAFFQQ-FFHCYCPVGFGRRTDPSGDYIRRYLPKLKGFPSRYIYEPWNAPE 471 Query: 449 ------KNDLSLNYPLPIVDHKK 465 K + ++YP PIV+H + Sbjct: 472 SIQKAAKCIIGVDYPRPIVNHAE 494 >gi|323496729|ref|ZP_08101774.1| deoxyribodipyrimidine photolyase [Vibrio sinaloensis DSM 21326] gi|323318154|gb|EGA71120.1| deoxyribodipyrimidine photolyase [Vibrio sinaloensis DSM 21326] Length = 417 Score = 134 bits (337), Expect = 4e-29, Method: Compositional matrix adjust. Identities = 123/431 (28%), Positives = 200/431 (46%), Gaps = 29/431 (6%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFI---ATP---EQWRQHGISARQSHFIYAS 64 L W NDLR+ DN L A D ++I V++ TP + Q + A + F+ + Sbjct: 6 LYWFTNDLRVADNPLLTEAASEVD-QLICVYLYPQLTPFLAQFSGQQQLGAHRLRFVDQA 64 Query: 65 LLQVQKSLSQKGIVFQY-HQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLL 123 L + SL+++G HQ + + L S Q VT L+ NR +E ++ L Sbjct: 65 LQDLNHSLAKQGQRLAVIHQTAE-----QTLPSLIEQYNVTHLYVNRCAGWDETKQMHTL 119 Query: 124 EKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIR 183 +++ + + S + L + Q+ +T FRK + + + DL LPV + Sbjct: 120 KQQFPYLKVV-SLSVNSLFQESQLPFTLAQLPATFTRFRKCM-EPVNTRDL--LPVSEL- 174 Query: 184 LTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNA--LHILRKFCKEKVYYYVEQRD-IPAIQ 240 P TP P P QA + +G + A H F + +Y + R+ + Sbjct: 175 ---PSTPLP-PEERSQPHQADPRVDYLGGETAGQQHCQWYFSHDFASHYKQTRNGLVGKS 230 Query: 241 GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPS 300 +++ SP+L++G LSP Q ++ + I + + EL+WRE++ + + Sbjct: 231 YSTKFSPWLALGCLSPAQLVAYIQR--YEHEIGANESTYWIVFELLWREYFYWYAMKHGA 288 Query: 301 VCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASF 360 + + I + D W +G T F I++A M+QL+ G++ NR R + AS Sbjct: 289 LLFARSGIT-ASTVTKPLDQSKFHRWTKGETDFAIVNACMKQLHATGYLSNRGRQLAASC 347 Query: 361 LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDP 420 L+ +L +DWR G YF +QL+D D+ASN G WQ+ A G D P R FN Q + +DP Sbjct: 348 LIHELDMDWRYGAAYFETQLIDYDVASNWGNWQYLAGVGADPNPS-RRFNLDKQTQMYDP 406 Query: 421 QGTFIRHWLPE 431 FI WL E Sbjct: 407 HRQFITRWLGE 417 >gi|255081582|ref|XP_002508013.1| predicted protein [Micromonas sp. RCC299] gi|226523289|gb|ACO69271.1| predicted protein [Micromonas sp. RCC299] Length = 450 Score = 134 bits (337), Expect = 4e-29, Method: Compositional matrix adjust. Identities = 124/467 (26%), Positives = 206/467 (44%), Gaps = 33/467 (7%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 +VW R DLR+ DN AL+AA V+A F+ P++ + ++++ +L +Q Sbjct: 1 VVWFRQDLRVRDNPALHAAARTGR-PVVACFVWCPKEEGGWPMGGATRYWLHHALGSLQA 59 Query: 71 SLSQK--GIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128 SL + G S+ S + L + + ++ NR YE ++ RD+ E++ Sbjct: 60 SLRARNAGGTSSPSSSSSSSSSFDELAAVVRECGAKDVYCNRVYEPWKIARDRECERKFS 119 Query: 129 HR--VICKSFDDSVLLPPGSILNHAL------QMYKVYTPFRKALIQNLVQADLRSLPVP 180 V +SF+ VL P A Y F + + L + P P Sbjct: 120 AELNVRFRSFNAGVLYEPWDARPDATDDACWNSGYGSVRFFLRGCAR-LGEPPPPLPPPP 178 Query: 181 AIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ 240 +R+ P + ++ +P G+ N K E+ V Sbjct: 179 TMRVRLPAD-KRARSYTEHGGVQSNPG--NGQSNGQSNAPKASTERFRADVRT------- 228 Query: 241 GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPS 300 T+++SPY+ G LS R+ ++ K V A +L L WR+ + +P Sbjct: 229 -TARISPYVRHGELSVREVYHSAKAIQVGSRKSRARSAAVFLRRLAWRDLAYWSLWRFPR 287 Query: 301 VCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASF 360 +C +P P +W AW+ G TG+P++DA MR+L G++ N +R + A F Sbjct: 288 LC-DEPLRP-QYATQWWALPWDPVAWQFGQTGYPLVDAGMRELWATGYVPNYVRHVVAGF 345 Query: 361 LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDP 420 L++ L VDWR G+ +F L+D D+A WQ +G D + + +P K DP Sbjct: 346 LIEYLNVDWRHGQLWFHDTLVDADVAIQGFMWQNGGHSGMDQWNF--VMHPVYAAKSADP 403 Query: 421 QGTFIRHWLPELNNVPTQYIH----APHSWLDKNDLSLN--YPLPIV 461 G ++R W PEL+ +P +Y+H AP + L +++L YP IV Sbjct: 404 DGEYVRRWCPELSGLPREYVHCPWEAPATTLAAANVALGRHYPKRIV 450 >gi|87280964|gb|ABD36589.1| cryptochrome 1 [Podarcis siculus] Length = 618 Score = 134 bits (336), Expect = 4e-29, Method: Compositional matrix adjust. Identities = 134/495 (27%), Positives = 205/495 (41%), Gaps = 54/495 (10%) Query: 7 MSVHLV-WLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASL 65 M V+ V W+R LR+ DN+AL +D V+I P + + F+ L Sbjct: 1 MGVNAVHWVRQGLRLPDNRALREVIQGADT-ARCVYILDPSFAGSSNVGINRWRFLLQCL 59 Query: 66 LQVQ---KSLSQKGIVFQYHQCSNFDDSI-EWLDSYCLQQRVTKLFYNRQYEINEVRRDK 121 + + L+ + V + F EW +TKL E RD Sbjct: 60 EDLDANLRKLNSRLFVIRGQPADVFPRLFKEW--------NITKLSIEYDSEPFGKERDA 111 Query: 122 LLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLV-QADLRSLPVP 180 ++K + S L L+ +++ P Q L+ + + +PV Sbjct: 112 AIKKLASEAGVEVIVRISHTL---YDLDKIIELNGGQPPLTYKRFQTLISRMEPLEMPVE 168 Query: 181 AI------RLTGPVT-----PSNIPRFFDYPFQAI---DPMFPIGEQNALHILRKFCKEK 226 I + T PV+ +P + F ++P GE AL L + + K Sbjct: 169 TITAEVMSKCTTPVSDDHDEKCGVPSLEELGFDTGGLPSAVWPGGETEALTRLERHLERK 228 Query: 227 VYYYVEQRDIPAIQGTS------QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFS 280 + V + P + S LSPYL G LS R + +L + + + K S S Sbjct: 229 AW--VANFERPRMNANSLLASPTGLSPYLRFGCLSCRLFYFKLTDLYKKVK-KNSSPPLS 285 Query: 281 WLNELIWREFYRHLMAFYPSV--CMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDA 338 +L+WREF+ P G P +I W+++ L W +G TGFP IDA Sbjct: 286 LYGQLLWREFFYTAATNNPRFDKMEGNPIC---VQIPWDRNPEALAKWAEGRTGFPWIDA 342 Query: 339 AMRQLNTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAAS 397 M QL GW+H+ R A FL + DL + W G + F LLD D + N G W W S Sbjct: 343 IMTQLRQEGWIHHLARRAVACFLTRGDLWISWEEGMKVFEELLLDADWSVNAGSWMW-LS 401 Query: 398 TGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSW------LDKND 451 + +F + P G+R DP G +IR +LP L P +YI+ P + + K Sbjct: 402 CSSFFQQFFHCYCPVGFGRRTDPNGDYIRRYLPVLRGFPAKYIYDPWNAPEGVQKVAKCV 461 Query: 452 LSLNYPLPIVDHKKA 466 + +NYP P+V+H +A Sbjct: 462 IGVNYPKPMVNHTEA 476 >gi|326523445|dbj|BAJ92893.1| predicted protein [Hordeum vulgare subsp. vulgare] Length = 420 Score = 134 bits (336), Expect = 4e-29, Method: Compositional matrix adjust. Identities = 79/198 (39%), Positives = 114/198 (57%), Gaps = 7/198 (3%) Query: 275 KSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFP 334 + G +L + RE+ R+L AF KP + W + + W+QG TG+P Sbjct: 15 EEGCSLFLRSIGLREYSRYL-AFNHPCSHEKPLLAHLRFFPWVVNEVYFKVWRQGRTGYP 73 Query: 335 IIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQW 394 ++DA MR+L GW+H+R+R++ +SF VK L + WR G +YF LLD DL S+ GWQ+ Sbjct: 74 LVDAGMRELWATGWLHDRIRVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQY 133 Query: 395 AASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIH----APHSWLDKN 450 + + D RI NP +G +FDP G ++R WLPEL +PT++IH AP S L Sbjct: 134 ISGSLPDGRELDRIDNPQFEGYKFDPYGEYVRRWLPELARLPTEWIHHPWDAPESVLQAA 193 Query: 451 DLSL--NYPLPIVDHKKA 466 + L NYPLPIV+ +A Sbjct: 194 GIELGSNYPLPIVELDEA 211 >gi|2073148|dbj|BAA19864.1| photolyase/blue-light receptor homolog2 [Mus musculus] Length = 569 Score = 134 bits (336), Expect = 4e-29, Method: Compositional matrix adjust. Identities = 137/492 (27%), Positives = 204/492 (41%), Gaps = 63/492 (12%) Query: 13 WLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQKSL 72 W R LR+ DN AL AA + V V+I P + + F+ SL + SL Sbjct: 3 WFRKGLRLHDNPALLAAVRGARC-VRCVYILDPWFAASSSVGINRWRFLLQSLEDLDTSL 61 Query: 73 SQ---KGIVFQYHQCSNFDDSI-EWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128 + + V + F EW VT+L + E RD + K + Sbjct: 62 RKLNSRLFVVRGQPADVFPRLFKEW--------GVTRLTFEYDSEPFGKERDAAIMKMAK 113 Query: 129 HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPV-PAIRLTGP 187 + ++S L L+ +++ P Q L+ LP PA+ ++ Sbjct: 114 EAGVEVVTENSHTL---YDLDRIIELNGQKPPLTYKRFQALISR--MELPKKPAVAVSSS 168 Query: 188 VTPS-------------NIPRF--FDYPFQAIDP-MFPIGEQNALHILRKFCKEKVYYYV 231 S +P +P + + P ++ GE AL L K + K + V Sbjct: 169 RMESCRAEIQKNHDDTYGVPSLEELGFPTEGLGPAVWQGGETEALARLDKHLERKAW--V 226 Query: 232 EQRDIPAIQGTS------QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGA---FSWL 282 + P + S LSPYL G LS R + RL DL K K + S Sbjct: 227 ANYERPRMNANSLLASPTGLSPYLRFGCLSCRLFYYRL----WDLYKKVKRNSTPPLSLF 282 Query: 283 NELIWREFYRHLMAFYPSV--CMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAM 340 +L+WREF+ P G P +I W+++ L W +G TGFP IDA M Sbjct: 283 GQLLWREFFYTAATNNPRFDRVEGNPIC---IQIPWDRNPEALAKWAEGKTGFPWIDAIM 339 Query: 341 RQLNTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTG 399 QL GW+H+ R A FL + DL V W G F LLD D + N G W W + + Sbjct: 340 TQLRQEGWIHHLARHAVACFLTRGDLWVSWESGVRVFDELLLDADFSVNAGSWMWLSCSA 399 Query: 400 NDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLD------KNDLS 453 +F + P G+R DP G +IR +LP+L P++YI+ P + + K + Sbjct: 400 FFQQ-FFHCYCPVGFGRRTDPSGDYIRRYLPKLKGFPSRYIYEPWNAPESVQKAAKCIIG 458 Query: 454 LNYPLPIVDHKK 465 ++YP PIV+H + Sbjct: 459 VDYPRPIVNHAE 470 >gi|76803462|ref|YP_327731.1| deoxyribodipyrimidine photolyase [Natronomonas pharaonis DSM 2160] gi|76559277|emb|CAI50885.2| deoxyribodipyrimidine photolyase [Natronomonas pharaonis DSM 2160] Length = 616 Score = 134 bits (336), Expect = 5e-29, Method: Compositional matrix adjust. Identities = 94/293 (32%), Positives = 142/293 (48%), Gaps = 37/293 (12%) Query: 188 VTPSNIPRFFDYPFQAIDPMFPIG-EQNALHILRKFCKEKVYYYVEQRDIP--AIQGTSQ 244 +TP+ I FD + P G + A LR F E+++ Y P A + +S Sbjct: 255 ITPAAIDAAFD--ISPSKTLVPTGTHRRAAERLRSFV-ERIHSYPGNISAPQDAREASSG 311 Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304 LSPYL+ G+LS RQ + + E+ + G + + L+W Y + +P Sbjct: 312 LSPYLNFGLLSVRQVYQSVSEQAPEC-----RGRQMFTDRLVWNLHYNQKLVDWPG---- 362 Query: 305 KPFIPWTEKI------EWNKDSH---LLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRM 355 WT+ ++N+D H L+QAWK G TGFP++DAAMR L GW++ R+R Sbjct: 363 -----WTDTAVNPVFEDFNRDHHDPELVQAWKGGETGFPMVDAAMRCLRQTGWLNFRMRA 417 Query: 356 ITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQG 415 + ASF V L W IG +++ L+D D+ N QW + G P R++NP Q Sbjct: 418 MCASFFVHILQQPWWIGADWYHHHLIDSDVGINYT--QWQSQAGTIGKPVQRVYNPRKQV 475 Query: 416 KRFDPQGTFIRHWLPELNNVPTQYIHAPHS--WLDKNDLSL----NYPLPIVD 462 + DP G +I WLPEL +P ++ P + D + +YP P+VD Sbjct: 476 RDHDPDGDWICRWLPELAPLPNTFLDRPERTPLAVQTDCGVTIGDDYPRPVVD 528 >gi|37521318|ref|NP_924695.1| photolyase [Gloeobacter violaceus PCC 7421] gi|35212315|dbj|BAC89690.1| photolyase [Gloeobacter violaceus PCC 7421] Length = 490 Score = 134 bits (336), Expect = 5e-29, Method: Compositional matrix adjust. Identities = 136/505 (26%), Positives = 225/505 (44%), Gaps = 49/505 (9%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M LVW R LR+ DN AL A ++ A++ +FI P + + F+ SL Sbjct: 1 MIRSLVWFRKGLRLHDNPALLDAARDA-ARLYPLFIVDPWFVNPERVGVNRMRFLLESLG 59 Query: 67 QVQKSLSQKG---IVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLL 123 ++ +L + G IV Q E L+ + ++ +L + R E RRD+ + Sbjct: 60 EIDGNLRRLGSRLIVLQGR-------PQEVLERVLSRWQIGRLCFERDTEPYARRRDEAI 112 Query: 124 E---KRLQHRVICKS----FDDSVLLPPGSILNHALQMYKVYTPFRKALIQ-NLVQADLR 175 +R+ RVI + +D L+ G Y + L + + A Sbjct: 113 RSMAERVGVRVISPTAHTLYDPDELIELGR--GKVPTTYGAFGRLAAKLGEPDAPVASPS 170 Query: 176 SLPVPAIRLTGPVTPSNIPRFF---DYPFQAIDPMFPIGEQNALHILRKFCKEK---VYY 229 LP P P+ + + P + I P P GE L L + ++ + Sbjct: 171 HLPPPGELDADYGIPTLAELGYPDPECPSRGIIP--PGGEGEGLRRLHVYLSDRQRSAGF 228 Query: 230 YVEQRDIPAIQ--GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIW 287 D A T+ L +L G LS R + +++ + ++ + S + +++W Sbjct: 229 AKPDTDPTAFDPPSTTALGAHLKFGCLSARTFYAEVQKVYREVGEHTEP-PMSLIGQILW 287 Query: 288 REFYRHLMAFYPSV--CMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNT 345 REF+ + P+ G P +I W+ + L AW + TGFP IDAAM QL T Sbjct: 288 REFFYTVGYATPNYDRIEGNPV---CRQIPWDDNPEYLAAWSEARTGFPWIDAAMTQLRT 344 Query: 346 IGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVP 404 GW+H+ R A FL + DL V W G+ F LLD D + N W W +++ + Sbjct: 345 EGWLHHLSRHAVACFLTRGDLWVSWEKGQAVFERLLLDQDWSLNASNWMWLSASAFFNA- 403 Query: 405 YFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSW-----LDKND---LSLNY 456 Y+R+++P K++DP+G ++R +LP+L VP ++I+ P W + K + +Y Sbjct: 404 YYRVYSPISFAKKYDPEGRYVRRYLPKLARVPAEFIYEP--WRAPLLVQKQAGCVVGRDY 461 Query: 457 PLPIVDHKKACHHTLNQYYAAKKQS 481 P PIVDH++A L + A +Q+ Sbjct: 462 PDPIVDHEQAKACNLERMRLAYEQN 486 >gi|15341192|gb|AAK94666.1| cryptochrome 2a [Xenopus laevis] Length = 501 Score = 133 bits (335), Expect = 5e-29, Method: Compositional matrix adjust. Identities = 93/275 (33%), Positives = 132/275 (48%), Gaps = 22/275 (8%) Query: 207 MFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS------QLSPYLSIGVLSPRQCW 260 ++P GE AL L + + K + V + P + S LSPYL G LS + + Sbjct: 146 IWPGGETEALARLDRHLERKAW--VANYERPRMNANSLLASPTGLSPYLRFGCLSCKLFY 203 Query: 261 NRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSV--CMGKPFIPWTEKIEWNK 318 RL+E + + K S +L+WREF+ P G P +I W+K Sbjct: 204 YRLQELYRKVK-KNNPPPLSLFGQLLWREFFYTAATNNPKFDQMEGNPIC---VQIPWDK 259 Query: 319 DSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFM 377 + L W +G TGFP IDA M QL GW+H+ R A FL + DL W G + F Sbjct: 260 NPKALAKWAEGKTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWNSWECGVKVFD 319 Query: 378 SQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPT 437 LLD D + N G W W + + +F + P G+R DP G FIR +LP L P+ Sbjct: 320 ELLLDADFSVNAGSWMWLSCSAFFQQ-FFHCYCPVGFGRRTDPNGDFIRRYLPVLKAFPS 378 Query: 438 QYIHAPHSWLD------KNDLSLNYPLPIVDHKKA 466 +YI+ P S + K + ++YP PIV+H +A Sbjct: 379 RYIYEPWSAPESVQKQAKCIIGIDYPKPIVNHAEA 413 >gi|300778230|ref|ZP_07088088.1| possible deoxyribodipyrimidine photo-lyase [Chryseobacterium gleum ATCC 35910] gi|300503740|gb|EFK34880.1| possible deoxyribodipyrimidine photo-lyase [Chryseobacterium gleum ATCC 35910] Length = 432 Score = 133 bits (335), Expect = 5e-29, Method: Compositional matrix adjust. Identities = 113/435 (25%), Positives = 195/435 (44%), Gaps = 25/435 (5%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQ-----SHFIYA 63 ++++W DLR D+++LY D +AVF+ + + Q R+ + F+ Sbjct: 7 INILWFTKDLRTRDSESLYNIMQ-EDLPFLAVFVFDSDLFAQKQFGFRKIGKYRARFLLE 65 Query: 64 SLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLL 123 S+ +++ L++K I Q N +++ + + + K+F +++ E + Sbjct: 66 SIEDLKQRLAKKNIPLLVRQ--NKTENV--FEEIAKEFEIVKIFCQQEWTKEETDLQTKI 121 Query: 124 EKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNL-VQADLRSLPVPAI 182 K + + KS+ LL P + ++ ++T FR + +NL ++ + + + Sbjct: 122 RKTVPYAFWEKSYS-QFLLHPFFVCKVLDKIPDLFTTFRNKIEKNLLIRPEFETEQLICY 180 Query: 183 RLTGPVTPSNIP----RFFDYPFQAIDPM-FPIGEQNALHILRKFCKEKVYY--YVEQRD 235 + I F D+ A FP GE L L + E + Y E R+ Sbjct: 181 KSEIHFESDKITLRSLGFEDFDTDARSAFPFPGGETEGLRRLHSYFPETQHLSRYKETRN 240 Query: 236 -IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHL 294 + + +S+ SP+LS G LS ++ +K + + EL+WR+F+R++ Sbjct: 241 GLVGTEYSSKFSPWLSCGSLSAVTIYHEIKR--FEKKFGSNESTYWLFFELLWRDFFRYV 298 Query: 295 MAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLR 354 + + K I + + L++ WK G T ++A M +L GWM NR R Sbjct: 299 SLQHKDLIFRKKGIT-HRQYSASHHQELIRKWKNGETTSDFVNANMIELQKTGWMSNRGR 357 Query: 355 MITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQ 414 AS+ K L DWRIG YF L+D D+ SN G W + A GNDS R FNP Q Sbjct: 358 QNAASYFCKTLNQDWRIGAAYFEEMLIDYDVHSNYGNWMYLAGVGNDSRN--RTFNPERQ 415 Query: 415 GKRFDPQGTFIRHWL 429 + +DP+ F R WL Sbjct: 416 AELYDPKQEFRRLWL 430 >gi|157325494|gb|ABF59870.2| cryptochrome dash [Karenia brevis] Length = 512 Score = 133 bits (335), Expect = 6e-29, Method: Compositional matrix adjust. Identities = 118/466 (25%), Positives = 205/466 (43%), Gaps = 48/466 (10%) Query: 1 MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQW------RQHGIS 54 M A A + W R DLR+ D AL AC ++ ++ +++ P ++ S Sbjct: 1 MVAPAAGTARAFWFRTDLRLDDQPALSTACEDA-LSLLPIYVFDPAKFIDLTLAGARKSS 59 Query: 55 ARQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEI 114 AR++ F+ SL+ +++ L +G D + C + ++ + Sbjct: 60 ARRARFLIESLVNLRRRLEDRGSGLAVA----IGDPAVVIADLCAS--ASAIYVTQGICS 113 Query: 115 NEVRRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRK-ALIQNLVQ-- 171 E + + +E +++ + L P + + +++ F+K A + ++ Sbjct: 114 EETQDEARVESKMKAPALLSRVWGGSLYFPDECGCNPTKAPLLFSNFKKKAEVFGKIREP 173 Query: 172 -ADLRSLPVPAIRLTGPVTPSNI-------PRFFDYPFQA--------IDPM----FPIG 211 A+L LP L G V ++ P + F++ DP F G Sbjct: 174 LAELTKLP----SLPGAVCEPDLSQALRFMPTLAELGFESEEINAAEFDDPRGVLPFSGG 229 Query: 212 EQNALHILRKFCKEKVY---YYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFV 268 E AL L+K+ + + Y++ + + +S+ SP+L++G LSPR+ W + + + Sbjct: 230 EDAALTRLQKWIWDDDHLREYWMIRNGMKGEGYSSKFSPWLALGCLSPRRVWKEV-QRYE 288 Query: 269 DLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQ 328 +K KS + + EL+WR+F+ ++ + K I K W + L WK Sbjct: 289 KERVKNKS-TYWLVFELMWRDFFVYMALTHGDKLFRKGGITGDRKRSWPGSTTDLDRWKN 347 Query: 329 GYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASN 388 G TG ++DA M +L GWM NR R AS+L+ ++ VDWR G +F LLD D SN Sbjct: 348 GKTGDLLVDANMLELLATGWMSNRGRQNVASYLIFNMRVDWRYGAAHFEEHLLDYDPCSN 407 Query: 389 NGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNN 434 G W AA V FN Q R+DP +++HWL L++ Sbjct: 408 WGNWVAAAGLTGQRV---NKFNTLYQLDRYDPSREYVKHWLGNLDD 450 >gi|297688842|ref|XP_002821877.1| PREDICTED: cryptochrome-2-like [Pongo abelii] Length = 614 Score = 133 bits (335), Expect = 6e-29, Method: Compositional matrix adjust. Identities = 141/503 (28%), Positives = 208/503 (41%), Gaps = 73/503 (14%) Query: 6 AMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASL 65 A SVH W R LR+ DN AL AA + V V+I P + + F+ SL Sbjct: 43 ASSVH--WFRKGLRLHDNPALLAAVRGARC-VRCVYILDPWFAASSSVGINRWRFLLQSL 99 Query: 66 LQVQKSLSQ---KGIVFQYHQCSNFDDSI-EWLDSYCLQQRVTKLFYNRQYEINEVRRDK 121 + SL + + V + F EW VT+L + E RD Sbjct: 100 EDLDTSLRKLNSRLFVVRGQPADVFPRLFKEW--------GVTRLTFEYDSEPFGKERDA 151 Query: 122 LLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLV-QADLRSLPVP 180 + K + + ++S L L+ +++ P Q ++ + +L PV Sbjct: 152 AIMKMAKEAGVEVVTENSHTL---YDLDRIIELNGQKPPLTYKRFQAIISRMELPKKPV- 207 Query: 181 AIRLTGPVTPS-----------------NIPRF--FDYPFQAIDP-MFPIGEQNALHILR 220 G VT +P +P + + P ++ GE AL L Sbjct: 208 -----GSVTSQQMESCRAEIQENHDETYGVPSLEELGFPTEGLGPAVWQGGETEALARLD 262 Query: 221 KFCKEKVYYYVEQRDIPAIQGTS------QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKP 274 K + K + V + P + S LSPYL G LS R + RL DL K Sbjct: 263 KHLERKAW--VANYERPRMNANSLLASPTGLSPYLRFGCLSCRLFYYRL----WDLYKKV 316 Query: 275 KSGA---FSWLNELIWREFYRHLMAFYPSV--CMGKPFIPWTEKIEWNKDSHLLQAWKQG 329 K + S +L+WREF+ P G P +I W+++ L W +G Sbjct: 317 KRNSTPPLSLFGQLLWREFFYTAATNNPRFDRMEGNPI---CIQIPWDRNPEALAKWAEG 373 Query: 330 YTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASN 388 TGFP IDA M QL GW+H+ R A FL + DL V W G F LLD D + N Sbjct: 374 KTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWVSWESGVRVFDELLLDADFSVN 433 Query: 389 NGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLD 448 G W W + + +F + P G+R DP G +IR +LP+L P++YI+ P + + Sbjct: 434 AGSWMWLSCSAFFQQ-FFHCYCPVGFGRRTDPSGDYIRRYLPKLKAFPSRYIYEPWNAPE 492 Query: 449 ------KNDLSLNYPLPIVDHKK 465 K + ++YP PIV+H + Sbjct: 493 SIQKAAKCIIGVDYPRPIVNHAE 515 >gi|118572252|sp|Q49AN0|CRY2_HUMAN RecName: Full=Cryptochrome-2 gi|27469701|gb|AAH41814.1| Cryptochrome 2 (photolyase-like) [Homo sapiens] gi|119588435|gb|EAW68029.1| cryptochrome 2 (photolyase-like), isoform CRA_a [Homo sapiens] gi|119588436|gb|EAW68030.1| cryptochrome 2 (photolyase-like), isoform CRA_a [Homo sapiens] gi|121647012|gb|ABM64210.1| photolyase-like cryptochrome 2 [Homo sapiens] gi|167996599|gb|ACA14134.1| growth-inhibiting protein 37 [Homo sapiens] gi|168267486|dbj|BAG09799.1| cryptochrome-2 [synthetic construct] gi|325463641|gb|ADZ15591.1| cryptochrome 2 (photolyase-like) [synthetic construct] Length = 593 Score = 133 bits (335), Expect = 6e-29, Method: Compositional matrix adjust. Identities = 141/504 (27%), Positives = 209/504 (41%), Gaps = 73/504 (14%) Query: 5 TAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYAS 64 +A SVH W R LR+ DN AL AA + V V+I P + + F+ S Sbjct: 21 SASSVH--WFRKGLRLHDNPALLAAVRGARC-VRCVYILDPWFAASSSVGINRWRFLLQS 77 Query: 65 LLQVQKSLSQ---KGIVFQYHQCSNFDDSI-EWLDSYCLQQRVTKLFYNRQYEINEVRRD 120 L + SL + + V + F EW VT+L + E RD Sbjct: 78 LEDLDTSLRKLNSRLFVVRGQPADVFPRLFKEW--------GVTRLTFEYDSEPFGKERD 129 Query: 121 KLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLV-QADLRSLPV 179 + K + + ++S L L+ +++ P Q ++ + +L PV Sbjct: 130 AAIMKMAKEAGVEVVTENSHTL---YDLDRIIELNGQKPPLTYKRFQAIISRMELPKKPV 186 Query: 180 PAIRLTGPVTPS-----------------NIPRF--FDYPFQAIDP-MFPIGEQNALHIL 219 G VT +P +P + + P ++ GE AL L Sbjct: 187 ------GLVTSQQMESCRAEIQENHDETYGVPSLEELGFPTEGLGPAVWQGGETEALARL 240 Query: 220 RKFCKEKVYYYVEQRDIPAIQGTS------QLSPYLSIGVLSPRQCWNRLKEEFVDLLIK 273 K + K + V + P + S LSPYL G LS R + RL DL K Sbjct: 241 DKHLERKAW--VANYERPRMNANSLLASPTGLSPYLRFGCLSCRLFYYRL----WDLYKK 294 Query: 274 PKSGA---FSWLNELIWREFYRHLMAFYPSV--CMGKPFIPWTEKIEWNKDSHLLQAWKQ 328 K + S +L+WREF+ P G P +I W+++ L W + Sbjct: 295 VKRNSTPPLSLFGQLLWREFFYTAATNNPRFDRMEGNPIC---IQIPWDRNPEALAKWAE 351 Query: 329 GYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLAS 387 G TGFP IDA M QL GW+H+ R A FL + DL V W G F LLD D + Sbjct: 352 GKTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWVSWESGVRVFDELLLDADFSV 411 Query: 388 NNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWL 447 N G W W + + +F + P G+R DP G +IR +LP+L P++YI+ P + Sbjct: 412 NAGSWMWLSCSAFFQQ-FFHCYCPVGFGRRTDPSGDYIRRYLPKLKAFPSRYIYEPWNAP 470 Query: 448 D------KNDLSLNYPLPIVDHKK 465 + K + ++YP PIV+H + Sbjct: 471 ESIQKAAKCIIGVDYPRPIVNHAE 494 >gi|332836250|ref|XP_001160595.2| PREDICTED: cryptochrome-2 isoform 1 [Pan troglodytes] Length = 614 Score = 133 bits (335), Expect = 6e-29, Method: Compositional matrix adjust. Identities = 141/503 (28%), Positives = 208/503 (41%), Gaps = 73/503 (14%) Query: 6 AMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASL 65 A SVH W R LR+ DN AL AA + V V+I P + + F+ SL Sbjct: 43 ASSVH--WFRKGLRLHDNPALLAAVRGARC-VRCVYILDPWFAASSSVGINRWRFLLQSL 99 Query: 66 LQVQKSLSQ---KGIVFQYHQCSNFDDSI-EWLDSYCLQQRVTKLFYNRQYEINEVRRDK 121 + SL + + V + F EW VT+L + E RD Sbjct: 100 EDLDTSLRKLNSRLFVVRGQPADVFPRLFKEW--------GVTRLTFEYDSEPFGKERDA 151 Query: 122 LLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLV-QADLRSLPVP 180 + K + + ++S L L+ +++ P Q ++ + +L PV Sbjct: 152 AIMKMAKEAGVEVVTENSHTL---YDLDRIIELNGQKPPLTYKRFQAIISRMELPKKPV- 207 Query: 181 AIRLTGPVTPS-----------------NIPRF--FDYPFQAIDP-MFPIGEQNALHILR 220 G VT +P +P + + P ++ GE AL L Sbjct: 208 -----GSVTSQQMESCRAEIQENHDETYGVPSLEELGFPTEGLGPAVWQGGETEALARLD 262 Query: 221 KFCKEKVYYYVEQRDIPAIQGTS------QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKP 274 K + K + V + P + S LSPYL G LS R + RL DL K Sbjct: 263 KHLERKAW--VANYERPRMNANSLLASPTGLSPYLRFGCLSCRLFYYRL----WDLYKKV 316 Query: 275 KSGA---FSWLNELIWREFYRHLMAFYPSV--CMGKPFIPWTEKIEWNKDSHLLQAWKQG 329 K + S +L+WREF+ P G P +I W+++ L W +G Sbjct: 317 KRNSTPPLSLFGQLLWREFFYTAATNNPRFDRMEGNPIC---IQIPWDRNPEALAKWAEG 373 Query: 330 YTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASN 388 TGFP IDA M QL GW+H+ R A FL + DL V W G F LLD D + N Sbjct: 374 KTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWVSWESGVRVFDELLLDADFSVN 433 Query: 389 NGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLD 448 G W W + + +F + P G+R DP G +IR +LP+L P++YI+ P + + Sbjct: 434 AGSWMWLSCSAFFQQ-FFHCYCPVGFGRRTDPSGDYIRRYLPKLKAFPSRYIYEPWNAPE 492 Query: 449 ------KNDLSLNYPLPIVDHKK 465 K + ++YP PIV+H + Sbjct: 493 SIQKAAKCIIGVDYPRPIVNHAE 515 >gi|3327130|dbj|BAA31633.1| KIAA0658 protein [Homo sapiens] Length = 589 Score = 133 bits (335), Expect = 6e-29, Method: Compositional matrix adjust. Identities = 141/504 (27%), Positives = 209/504 (41%), Gaps = 73/504 (14%) Query: 5 TAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYAS 64 +A SVH W R LR+ DN AL AA + V V+I P + + F+ S Sbjct: 17 SASSVH--WFRKGLRLHDNPALLAAVRGARC-VRCVYILDPWFAASSSVGINRWRFLLQS 73 Query: 65 LLQVQKSLSQ---KGIVFQYHQCSNFDDSI-EWLDSYCLQQRVTKLFYNRQYEINEVRRD 120 L + SL + + V + F EW VT+L + E RD Sbjct: 74 LEDLDTSLRKLNSRLFVVRGQPADVFPRLFKEW--------GVTRLTFEYDSEPFGKERD 125 Query: 121 KLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLV-QADLRSLPV 179 + K + + ++S L L+ +++ P Q ++ + +L PV Sbjct: 126 AAIMKMAKEAGVEVVTENSHTL---YDLDRIIELNGQKPPLTYKRFQAIISRMELPKKPV 182 Query: 180 PAIRLTGPVTPS-----------------NIPRF--FDYPFQAIDP-MFPIGEQNALHIL 219 G VT +P +P + + P ++ GE AL L Sbjct: 183 ------GLVTSQQMESCRAEIQENHDETYGVPSLEELGFPTEGLGPAVWQGGETEALARL 236 Query: 220 RKFCKEKVYYYVEQRDIPAIQGTS------QLSPYLSIGVLSPRQCWNRLKEEFVDLLIK 273 K + K + V + P + S LSPYL G LS R + RL DL K Sbjct: 237 DKHLERKAW--VANYERPRMNANSLLASPTGLSPYLRFGCLSCRLFYYRL----WDLYKK 290 Query: 274 PKSGA---FSWLNELIWREFYRHLMAFYPSV--CMGKPFIPWTEKIEWNKDSHLLQAWKQ 328 K + S +L+WREF+ P G P +I W+++ L W + Sbjct: 291 VKRNSTPPLSLFGQLLWREFFYTAATNNPRFDRMEGNPIC---IQIPWDRNPEALAKWAE 347 Query: 329 GYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLAS 387 G TGFP IDA M QL GW+H+ R A FL + DL V W G F LLD D + Sbjct: 348 GKTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWVSWESGVRVFDELLLDADFSV 407 Query: 388 NNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWL 447 N G W W + + +F + P G+R DP G +IR +LP+L P++YI+ P + Sbjct: 408 NAGSWMWLSCSAFFQQ-FFHCYCPVGFGRRTDPSGDYIRRYLPKLKAFPSRYIYEPWNAP 466 Query: 448 D------KNDLSLNYPLPIVDHKK 465 + K + ++YP PIV+H + Sbjct: 467 ESIQKAAKCIIGVDYPRPIVNHAE 490 >gi|327272396|ref|XP_003220971.1| PREDICTED: cryptochrome-1-like isoform 2 [Anolis carolinensis] Length = 589 Score = 133 bits (334), Expect = 6e-29, Method: Compositional matrix adjust. Identities = 136/495 (27%), Positives = 204/495 (41%), Gaps = 54/495 (10%) Query: 7 MSVHLV-WLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASL 65 M V+ V W R LR+ DN AL +D V V+I P + + F+ L Sbjct: 1 MGVNAVHWFRKGLRLHDNPALREVIQGADT-VRCVYILDPWFAGSSNVGINRWRFLLQCL 59 Query: 66 LQVQ---KSLSQKGIVFQYHQCSNFDDSI-EWLDSYCLQQRVTKLFYNRQYEINEVRRDK 121 + + L+ + V + F EW +TKL E RD Sbjct: 60 EDLDANLRKLNSRLFVIRGQPADVFPRLFKEW--------NITKLSIEYDSEPFGKERDA 111 Query: 122 LLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLV-QADLRSLPVP 180 ++K + S L L+ +++ P Q L+ + + +PV Sbjct: 112 AIKKLASEAGVEVIVRISHTL---YELDKIIELNGGQPPLTYKRFQTLISRMEPLEIPVE 168 Query: 181 AI------RLTGPVTPS-----NIPRFFDYPFQA---IDPMFPIGEQNALHILRKFCKEK 226 I + T PV+ +P + F ++P GE AL L + + K Sbjct: 169 TITAEVMSKCTTPVSDDHDEKYGVPSLEELGFDTDGLPSAVWPGGETEALTRLERHLERK 228 Query: 227 VYYYVEQRDIPAIQGTS------QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFS 280 + V + P + S LSPYL G LS R + +L + + + K S S Sbjct: 229 AW--VANFERPRMNANSLLASPTGLSPYLRFGCLSCRLFYFKLTDLYKKVK-KNSSPPLS 285 Query: 281 WLNELIWREFYRHLMAFYPSV--CMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDA 338 +L+WREF+ P G P +I W+++ L W +G TGFP IDA Sbjct: 286 LYGQLLWREFFYTAATNNPRFDKMEGNPIC---VQIPWDRNPEALAKWAEGRTGFPWIDA 342 Query: 339 AMRQLNTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAAS 397 M QL GW+H+ R A FL + DL + W G + F LLD D + N G W W S Sbjct: 343 IMTQLRQEGWIHHLARHAVACFLTRGDLWISWEEGMKVFEELLLDADWSVNAGSWMW-LS 401 Query: 398 TGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLD------KND 451 + +F + P G+R DP G +IR +LP L P +YI+ P + D K Sbjct: 402 CSSFFQQFFHCYCPVGFGRRTDPNGDYIRRYLPVLRGFPAKYIYDPWNAPDGVQKAAKCI 461 Query: 452 LSLNYPLPIVDHKKA 466 + +NYP P+V+H +A Sbjct: 462 IGVNYPKPMVNHAEA 476 >gi|109106624|ref|XP_001113162.1| PREDICTED: cryptochrome-2-like [Macaca mulatta] Length = 593 Score = 133 bits (334), Expect = 7e-29, Method: Compositional matrix adjust. Identities = 141/503 (28%), Positives = 207/503 (41%), Gaps = 73/503 (14%) Query: 6 AMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASL 65 A SVH W R LR+ DN AL AA + V V+I P + + F+ SL Sbjct: 22 ASSVH--WFRKGLRLHDNPALLAAVRGARC-VRCVYILDPWFAASSSVGINRWRFLLQSL 78 Query: 66 LQVQKSLSQ---KGIVFQYHQCSNFDDSI-EWLDSYCLQQRVTKLFYNRQYEINEVRRDK 121 + SL + + V + F EW VT+L + E RD Sbjct: 79 EDLDTSLRKLNSRLFVVRGQPADVFPRLFKEW--------GVTRLTFEYDSEPFGKERDA 130 Query: 122 LLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLV-QADLRSLPVP 180 + K + + ++S L L +++ P Q ++ + +L PV Sbjct: 131 AIMKMAKEAGVEVVTENSHTL---YDLERIIELNGQKPPLTYKRFQAIISRMELPKKPV- 186 Query: 181 AIRLTGPVTPS-----------------NIPRF--FDYPFQAIDP-MFPIGEQNALHILR 220 G VT +P +P + + P ++ GE AL L Sbjct: 187 -----GSVTSQQMESCRAEIQENHDETYGVPSLEELGFPTEGLGPAVWQGGETEALARLD 241 Query: 221 KFCKEKVYYYVEQRDIPAIQGTS------QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKP 274 K + K + V + P + S LSPYL G LS R + RL DL K Sbjct: 242 KHLERKAW--VANYERPRMNANSLLASPTGLSPYLRFGCLSCRLFYYRL----WDLYKKV 295 Query: 275 KSGA---FSWLNELIWREFYRHLMAFYPSV--CMGKPFIPWTEKIEWNKDSHLLQAWKQG 329 K + S +L+WREF+ P G P +I W+++ L W +G Sbjct: 296 KRNSTPPLSLFGQLLWREFFYTAATNNPRFDRMEGNPIC---IQIPWDRNPEALAKWAEG 352 Query: 330 YTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASN 388 TGFP IDA M QL GW+H+ R A FL + DL V W G F LLD D + N Sbjct: 353 KTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWVSWESGVRVFDELLLDADFSVN 412 Query: 389 NGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLD 448 G W W + + +F + P G+R DP G +IR +LP+L P++YI+ P + + Sbjct: 413 AGSWMWLSCSAFFQQ-FFHCYCPVGFGRRTDPSGDYIRRYLPKLKGFPSRYIYEPWNAPE 471 Query: 449 ------KNDLSLNYPLPIVDHKK 465 K + ++YP PIV+H + Sbjct: 472 SIQKAAKCIIGVDYPRPIVNHAE 494 >gi|254369039|ref|ZP_04985052.1| hypothetical protein FTAG_00881 [Francisella tularensis subsp. holarctica FSC022] gi|157121960|gb|EDO66130.1| hypothetical protein FTAG_00881 [Francisella tularensis subsp. holarctica FSC022] Length = 457 Score = 133 bits (334), Expect = 7e-29, Method: Compositional matrix adjust. Identities = 90/280 (32%), Positives = 134/280 (47%), Gaps = 14/280 (5%) Query: 211 GEQNALHILRKFCKEKVYYYVEQRDIP--AIQGTSQLSPYLSIGVLSPRQCW-------N 261 G AL IL F ++ Y ++ P A + S+LSPY++ GV+S ++ + N Sbjct: 146 GRIRALRILDSFLYQRGCGYTKEMSSPVTAFKSCSRLSPYIAFGVISLKEIYQKANQRKN 205 Query: 262 RLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSH 321 +KE V K S S+L+ L W + + PS+ + + + Sbjct: 206 EIKESSVKNKTKWLSAMRSFLSRLRWHCHFMQKLEDQPSIEYENLHSAYDQLRTEPLNQQ 265 Query: 322 LLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLL 381 +AWK G TG+P+IDA MR L GW++ R+R + SF L +DWR+ Y Sbjct: 266 CFEAWKTGNTGYPMIDACMRALIATGWLNFRMRAMLMSFASYHLWLDWRVTSLYLAVLFT 325 Query: 382 DGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIH 441 D + + Q +G + RI+NP Q P G FIR WLPEL NV + IH Sbjct: 326 DYEPGIHYS--QVQMQSGTTGINSIRIYNPIKQSIDQYPNGEFIRRWLPELENVSNENIH 383 Query: 442 APHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481 P WL+K++ SL+YP P +D K+A + Y +K S Sbjct: 384 TP--WLEKHN-SLDYPDPTIDEKQARKFAADNIYKIRKSS 420 >gi|311247933|ref|XP_003122883.1| PREDICTED: cryptochrome-2-like [Sus scrofa] Length = 594 Score = 133 bits (334), Expect = 7e-29, Method: Compositional matrix adjust. Identities = 141/501 (28%), Positives = 207/501 (41%), Gaps = 73/501 (14%) Query: 8 SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67 SVH W R LR+ DN AL AA + V V+I P + + F+ SL Sbjct: 25 SVH--WFRKGLRLHDNPALLAAVRGAHC-VRCVYILDPWFAASSSVGINRWRFLLQSLED 81 Query: 68 VQKSLSQ---KGIVFQYHQCSNFDDSI-EWLDSYCLQQRVTKLFYNRQYEINEVRRDKLL 123 + SL + + V + F EW VT+L + E RD + Sbjct: 82 LDTSLRKLNSRLFVVRGQPADVFPALFQEW--------GVTRLTFEYDSEPFGKERDAAI 133 Query: 124 EKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLV-QADLRSLPVPAI 182 K + + ++S L L+ +++ P Q L+ + +L PV Sbjct: 134 MKMAKEAGVEVVTENSHTL---YDLDKIIELNGQKPPLTYKRFQALISRMELPKKPV--- 187 Query: 183 RLTGPVTPS-----------------NIPRF--FDYPFQAIDP-MFPIGEQNALHILRKF 222 G VT +P +P + + P ++ GE AL L K Sbjct: 188 ---GSVTSQQMESCRAEIQENHDETYGVPSLEELGFPTEGLGPAVWQGGETEALARLDKH 244 Query: 223 CKEKVYYYVEQRDIPAIQGTS------QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKS 276 + K + V + P + S LSPYL G LS R + RL DL K K Sbjct: 245 LERKAW--VANYERPRMNANSLLASPTGLSPYLRFGCLSCRLFYYRL----WDLYKKVKR 298 Query: 277 GA---FSWLNELIWREFYRHLMAFYPSV--CMGKPFIPWTEKIEWNKDSHLLQAWKQGYT 331 + S +L+WREF+ P G P +I W+++ L W +G T Sbjct: 299 NSTPPLSLFGQLLWREFFYTAATNNPRFDRMEGNPIC---IQIPWDRNPEALAKWAEGKT 355 Query: 332 GFPIIDAAMRQLNTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNG 390 GFP IDA M QL GW+H+ R A FL + DL V W G F LLD D + N G Sbjct: 356 GFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWVSWESGVRVFDELLLDADFSVNAG 415 Query: 391 GWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLD-- 448 W W + + +F + P G+R DP G +IR +LP+L P++YI+ P + + Sbjct: 416 SWMWLSCSAFFQQ-FFHCYCPVGFGRRTDPSGDYIRRYLPKLKGFPSRYIYEPWNAPESV 474 Query: 449 ----KNDLSLNYPLPIVDHKK 465 K + ++YP PIV+H + Sbjct: 475 QKAAKCIIGVDYPRPIVNHAE 495 >gi|170287804|gb|AAI61038.1| Unknown (protein for MGC:184712) [Xenopus (Silurana) tropicalis] Length = 618 Score = 133 bits (334), Expect = 7e-29, Method: Compositional matrix adjust. Identities = 133/494 (26%), Positives = 204/494 (41%), Gaps = 52/494 (10%) Query: 7 MSVHLV-WLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASL 65 M V+ V W R LR+ DN AL +D + V+I P + + F+ L Sbjct: 1 MGVNAVHWFRKGLRLHDNPALRECIQGADT-IRCVYILDPWFAGSSNVGINRWRFLLQCL 59 Query: 66 LQVQ---KSLSQKGIVFQYHQCSNFDDSI-EWLDSYCLQQRVTKLFYNRQYEINEVRRDK 121 + + L+ + V + F EW ++TKL E RD Sbjct: 60 EDLDANLRKLNSRLFVIRGQPADVFPRLFKEW--------KITKLSIEYDSEPFGKERDA 111 Query: 122 LLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPA 181 ++K + S L L+ +++ P Q L+ + + L +P Sbjct: 112 AIKKLASEAGVEVIVRISHTL---YDLDKIIELNGGQPPLTYKRFQTLI-SKMEPLEIPV 167 Query: 182 IRLTGPV-----TPS--------NIPRFFDYPFQA---IDPMFPIGEQNALHILRKFCKE 225 +T V TP +P + F ++P GE AL L + + Sbjct: 168 ETITAEVMEKCTTPVLDDHDEKYGVPSLEELGFDTEGLPSAVWPGGETEALTRLERHLER 227 Query: 226 KVYYYVEQRDI----PAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSW 281 K + +R + T+ LSPYL G LS R + +L + + + K S S Sbjct: 228 KAWVANFERPRMNANSLLASTTGLSPYLRFGCLSCRLFYFKLTDLYKKVK-KNSSPPLSL 286 Query: 282 LNELIWREFYRHLMAFYPSV--CMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAA 339 +L+WREF+ P G P +I W+++ L W +G TGFP IDA Sbjct: 287 YGQLLWREFFYTAATNNPRFDKMEGNPIC---VQIPWDRNPEALAKWAEGRTGFPWIDAI 343 Query: 340 MRQLNTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAAST 398 M QL GW+H+ R A FL + DL + W G + F LLD D + N G W W S Sbjct: 344 MTQLRQEGWIHHLARHAVACFLTRGDLWISWEEGMKVFEELLLDADWSVNAGSWMW-LSC 402 Query: 399 GNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSW------LDKNDL 452 + +F + P G+R DP G +IR +LP L P +YI+ P + + K + Sbjct: 403 SSFFQQFFHCYCPVGFGRRTDPNGDYIRRYLPILKGFPPKYIYDPWNAPETVQKVAKCII 462 Query: 453 SLNYPLPIVDHKKA 466 +NYP P+V+H +A Sbjct: 463 GVNYPKPMVNHAEA 476 >gi|188536100|ref|NP_066940.2| cryptochrome-2 isoform 1 [Homo sapiens] gi|194380960|dbj|BAG64048.1| unnamed protein product [Homo sapiens] Length = 614 Score = 133 bits (334), Expect = 8e-29, Method: Compositional matrix adjust. Identities = 141/504 (27%), Positives = 209/504 (41%), Gaps = 73/504 (14%) Query: 5 TAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYAS 64 +A SVH W R LR+ DN AL AA + V V+I P + + F+ S Sbjct: 42 SASSVH--WFRKGLRLHDNPALLAAVRGARC-VRCVYILDPWFAASSSVGINRWRFLLQS 98 Query: 65 LLQVQKSLSQ---KGIVFQYHQCSNFDDSI-EWLDSYCLQQRVTKLFYNRQYEINEVRRD 120 L + SL + + V + F EW VT+L + E RD Sbjct: 99 LEDLDTSLRKLNSRLFVVRGQPADVFPRLFKEW--------GVTRLTFEYDSEPFGKERD 150 Query: 121 KLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLV-QADLRSLPV 179 + K + + ++S L L+ +++ P Q ++ + +L PV Sbjct: 151 AAIMKMAKEAGVEVVTENSHTL---YDLDRIIELNGQKPPLTYKRFQAIISRMELPKKPV 207 Query: 180 PAIRLTGPVTPS-----------------NIPRF--FDYPFQAIDP-MFPIGEQNALHIL 219 G VT +P +P + + P ++ GE AL L Sbjct: 208 ------GLVTSQQMESCRAEIQENHDETYGVPSLEELGFPTEGLGPAVWQGGETEALARL 261 Query: 220 RKFCKEKVYYYVEQRDIPAIQGTS------QLSPYLSIGVLSPRQCWNRLKEEFVDLLIK 273 K + K + V + P + S LSPYL G LS R + RL DL K Sbjct: 262 DKHLERKAW--VANYERPRMNANSLLASPTGLSPYLRFGCLSCRLFYYRL----WDLYKK 315 Query: 274 PKSGA---FSWLNELIWREFYRHLMAFYPSV--CMGKPFIPWTEKIEWNKDSHLLQAWKQ 328 K + S +L+WREF+ P G P +I W+++ L W + Sbjct: 316 VKRNSTPPLSLFGQLLWREFFYTAATNNPRFDRMEGNPI---CIQIPWDRNPEALAKWAE 372 Query: 329 GYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLAS 387 G TGFP IDA M QL GW+H+ R A FL + DL V W G F LLD D + Sbjct: 373 GKTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWVSWESGVRVFDELLLDADFSV 432 Query: 388 NNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWL 447 N G W W + + +F + P G+R DP G +IR +LP+L P++YI+ P + Sbjct: 433 NAGSWMWLSCSAFFQQ-FFHCYCPVGFGRRTDPSGDYIRRYLPKLKAFPSRYIYEPWNAP 491 Query: 448 D------KNDLSLNYPLPIVDHKK 465 + K + ++YP PIV+H + Sbjct: 492 ESIQKAAKCIIGVDYPRPIVNHAE 515 >gi|158255956|dbj|BAF83949.1| unnamed protein product [Homo sapiens] Length = 593 Score = 132 bits (333), Expect = 9e-29, Method: Compositional matrix adjust. Identities = 137/501 (27%), Positives = 209/501 (41%), Gaps = 67/501 (13%) Query: 5 TAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYAS 64 +A SVH W R LR+ DN AL AA + V V+I P + + F+ S Sbjct: 21 SASSVH--WFRKGLRLHDNPALLAAVRGARC-VRCVYILDPWFAASSSVGINRWRFLLQS 77 Query: 65 LLQVQKSLSQ---KGIVFQYHQCSNFDDSI-EWLDSYCLQQRVTKLFYNRQYEINEVRRD 120 L + SL + + V + F EW VT+L + E RD Sbjct: 78 LEDLDTSLRKLNSRLFVVRGQPADVFPRLFKEW--------GVTRLTFEYDSEPFGKERD 129 Query: 121 KLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLV-QADLRSLPV 179 + K + + ++S L L+ +++ P Q ++ + +L PV Sbjct: 130 AAIMKMAKEAGVEVVTENSHTL---YDLDRIIELNGQKPPLTYKRFQAIISRMELPKKPV 186 Query: 180 PAIRLTGPVTPS-----------------NIPRF--FDYPFQAIDP-MFPIGEQNALHIL 219 G VT +P +P + + P ++ GE AL L Sbjct: 187 ------GLVTSQQMESCRAEIQENHDETYGVPSLEELGFPTEGLGPAVWQGGETEALARL 240 Query: 220 RKFCKEKVYYYVEQRDIPAIQGTS------QLSPYLSIGVLSPRQCWNRLKEEFVDLLIK 273 K + K + V + P + S LSPYL G LS R + RL + + + + Sbjct: 241 DKHLERKAW--VANYERPRMNANSLLASPTGLSPYLRFGCLSCRLFYYRLWDLY-KRVKR 297 Query: 274 PKSGAFSWLNELIWREFYRHLMAFYPSV--CMGKPFIPWTEKIEWNKDSHLLQAWKQGYT 331 + S +L+WREF+ P G P +I W+++ L W +G T Sbjct: 298 NSTPPLSLFGQLLWREFFYTAATNNPRFDRMEGNPIC---IQIPWDRNPEALAKWAEGKT 354 Query: 332 GFPIIDAAMRQLNTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNG 390 GFP IDA M QL GW+H+ R A FL + DL V W G F LLD D + N G Sbjct: 355 GFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWVSWESGVRVFDELLLDADFSVNAG 414 Query: 391 GWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLD-- 448 W W + + +F + P G+R DP G +IR +LP+L P++YI+ P + + Sbjct: 415 SWMWLSCSAFFQQ-FFHCYCPVGFGRRTDPSGDYIRRYLPKLKAFPSRYIYEPWNAPESI 473 Query: 449 ----KNDLSLNYPLPIVDHKK 465 K + ++YP PIV+H + Sbjct: 474 QKAAKCIIGVDYPRPIVNHAE 494 >gi|120556015|ref|YP_960366.1| deoxyribodipyrimidine photo-lyase [Marinobacter aquaeolei VT8] gi|120325864|gb|ABM20179.1| deoxyribodipyrimidine photo-lyase family protein (cryptochrome) [Marinobacter aquaeolei VT8] Length = 505 Score = 132 bits (333), Expect = 9e-29, Method: Compositional matrix adjust. Identities = 125/484 (25%), Positives = 209/484 (43%), Gaps = 63/484 (13%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 +VW + DLR+ D+ LYAA S V+ +++ PE W+Q S RQ F+ SL ++K Sbjct: 4 VVWFKRDLRVEDHGPLYAAV-QSGQPVVPLYVVEPEYWQQPDTSRRQWQFVAESLESLRK 62 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEIN-EVRRDKLLEKRLQH 129 L + G + I LD Q +T++F +++ + +RDK + Q Sbjct: 63 QLKRLGSDL----LIAHGEVIRTLDDLKQQYGITQVFCHQETGGDWTFQRDKAVIAWCQS 118 Query: 130 RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQAD---------LRSLPVP 180 + I ++ + F +++ LV D ++S +P Sbjct: 119 QQI---------------------EFREWQGF--GVVRRLVNRDDWDQHWNRIIKSTRLP 155 Query: 181 AIRLTGPVTPSNIPRFFDYPFQAIDPMFP----IGEQNALHILRKFCKEKV--YYYVEQR 234 A S P+ P Q P G + A+ +L F + + Y Y Sbjct: 156 APEGIRSPDTSGWPQSLPAPAQLNGGPCPDRQAGGSERAIALLDSFLERRCVGYQYNMSS 215 Query: 235 DIPAIQGTSQLSPYLSIGVLSPRQCWNRLKE--EFVDLLIKPKSGAFSWLNELIWREFYR 292 + A + S+LSP+L+ G +S R + + KE + + L + K S+ + L W + Sbjct: 216 PLTAPRACSRLSPHLAWGTISLRDVYQQSKETGDHRNTLPRKKKSLTSFRSRLHWHCHFI 275 Query: 293 HLMAFYPSVCMGKPFIPWTEKIEWNK----DSHLLQAWKQGYTGFPIIDAAMRQLNTIGW 348 + P + F ++E K +S L W++G TG+P++DA MR L GW Sbjct: 276 QKLEDEPEL----EFRAMHRELEHLKTGPNNSERLHRWQEGQTGWPLVDACMRSLEHTGW 331 Query: 349 MHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRI 408 ++ R+R + + L + WR + D + + Q +G + RI Sbjct: 332 INFRMRAMLMAVASYQLWLHWRDPALHLARLFTDFEPGIHYP--QAQMQSGLTGINALRI 389 Query: 409 FNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWL----DKNDLSLN-YPLPIVDH 463 +NP +Q ++ DP+G FIR W+PEL VP + IH P WL K N Y P+ DH Sbjct: 390 YNPVLQSQKLDPEGEFIRRWIPELAGVPAEMIHTP--WLMTPAQKQRFGGNTYISPVCDH 447 Query: 464 KKAC 467 ++A Sbjct: 448 EQAA 451 >gi|47218319|emb|CAG04151.1| unnamed protein product [Tetraodon nigroviridis] Length = 625 Score = 132 bits (333), Expect = 9e-29, Method: Compositional matrix adjust. Identities = 137/517 (26%), Positives = 215/517 (41%), Gaps = 70/517 (13%) Query: 7 MSVHLV-WLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASL 65 M +H + W R LR+ DN +L + +D+ V V+I P + + S Sbjct: 1 MVIHTIHWFRKGLRLHDNPSLKDSLLGADS-VRCVYILDPWFAGSSNVGINRWRICLRSP 59 Query: 66 LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDS-------------------------YCLQ 100 L V S Q+ + F + D S+ L+S Y Q Sbjct: 60 LTV--SQEQEALRFLLQSLEDLDSSLRKLNSRLFVIRGQPTDVFPRLFKAHPTVAVYVPQ 117 Query: 101 Q-RVTKLFYNRQYEINEVRRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYT 159 + +++L Y E RD ++K + + S L L+ +++ + Sbjct: 118 EWNISRLSYEYDSEPFGKERDAAIKKLASEAGVEVTVCISHTL---YDLDKIIELNGGQS 174 Query: 160 PFRKALIQNLVQADLRSLPVPAIRLTGPV-----TP--------SNIPRFFDYPFQA--- 203 P Q L+ + + + VPA +T + TP +P + F Sbjct: 175 PLTYKRFQTLI-SRMDPVEVPAESITAEIMGKCTTPLSDDHDDKYGVPSLEELGFDTEVL 233 Query: 204 IDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS------QLSPYLSIGVLSPR 257 ++P GE AL L + + K + V + P + S LSPYL G LS R Sbjct: 234 SSAVWPGGETEALTRLERHLERKAW--VANFERPRMNANSLLASPTGLSPYLRFGCLSCR 291 Query: 258 QCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK-PFIPWTEKIEW 316 + +L + + + K S S +L+WREF+ P C K P +I W Sbjct: 292 LFYFKLTDLYRKVK-KNSSPPLSLYGQLLWREFFYTAATNNP--CFDKMENNPICVQIPW 348 Query: 317 NKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK-DLLVDWRIGEEY 375 +++ L W +G TGFP IDA M QL GW+H+ R A FL + DL + W G + Sbjct: 349 DRNPEALAKWAEGRTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWIGWEEGMKV 408 Query: 376 FMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNV 435 F LLD D + N G W W S + +F + P G+R DP G +IR +LP L Sbjct: 409 FEELLLDADWSVNAGSWMW-LSCSSFFQQFFHCYCPVGFGRRTDPNGDYIRRYLPILRGF 467 Query: 436 PTQYIHAPHSWLD------KNDLSLNYPLPIVDHKKA 466 P +YI+ P + + K + ++YP P+V+H +A Sbjct: 468 PAKYIYDPWNAPESVQKAAKCLIGVHYPKPMVNHAEA 504 >gi|312881360|ref|ZP_07741157.1| RNA-binding cryptochrome Cry1 [Vibrio caribbenthicus ATCC BAA-2122] gi|309371000|gb|EFP98455.1| RNA-binding cryptochrome Cry1 [Vibrio caribbenthicus ATCC BAA-2122] Length = 431 Score = 132 bits (333), Expect = 9e-29, Method: Compositional matrix adjust. Identities = 130/450 (28%), Positives = 206/450 (45%), Gaps = 64/450 (14%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKV-------IAVFI---ATPEQWRQHGISARQS 58 + L W NDLR+TDN L+ A D + + F+ + E+W A ++ Sbjct: 5 IGLYWFTNDLRLTDNPLLHKASKEVDQLICLYTRPQLTCFLQKYSCQERW-----GAART 59 Query: 59 HFIYASLLQVQKSLSQKGIVFQYHQCSNFDD-SIEWLDSYCLQQRVTKLFYNRQYEINEV 117 F+ SL + +SL G Q + D+ +I L + V+ L+ N+ +E Sbjct: 60 LFLNQSLRNLSESLDDVG-----QQLTVVDEPTIGTLSDLVTKHEVSDLYCNQFAGFDEQ 114 Query: 118 RRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQ-MYKVYTPFRKALIQNLVQADLRS 176 + L + +I + + S L L AL + +T FRK L++ + +L Sbjct: 115 SVIEQLGRNFSDLIIHQ--NSSNHLYSEEQLPFALNGLPNTFTKFRK-LVEGISLRELVE 171 Query: 177 LPVPAIRLTGPVTPSNIPRFFDYP----FQAIDPMFPIGEQNAL-HILRKFCKEKVYYYV 231 +P RL P+ ++ R P Q+++ F GE + H LR F ++ Y Sbjct: 172 VP----RLPPPI--KSVGRGVQIPAEKQMQSVE--FLGGEVFGMDHCLRYFSTKRASEYK 223 Query: 232 EQRD-IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFS---WLN-ELI 286 R+ + +++ SP+L+ G +SPRQ L++ + K+GA W+ EL+ Sbjct: 224 LTRNGLDGPSYSTKFSPWLAHGCISPRQVLEVLRD------YEQKNGANESTYWIFFELL 277 Query: 287 WREFY--------RHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDA 338 WREF+ ++L + KP T S W +G T FPI++A Sbjct: 278 WREFFYWYARRWGKNLFLYSGIKTCSKPAAKGTSV------STAFSNWIEGKTDFPIVNA 331 Query: 339 AMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAAST 398 M QL G+M NR R + AS L+ +L +DWR G YF +QL+D D+ SN G WQ+ A Sbjct: 332 CMNQLRKTGFMSNRGRQLVASCLIHELGIDWRCGAAYFETQLIDYDVGSNWGNWQYLAGV 391 Query: 399 GNDSVPYFRIFNPTIQGKRFDPQGTFIRHW 428 G D+ P R FN Q + +DP+ FI W Sbjct: 392 GADTQPA-RQFNLGKQTEIYDPKREFIMQW 420 >gi|119713707|gb|ABL97757.1| deoxyribodipyrimidine photolyase [uncultured marine bacterium EB0_41B09] Length = 424 Score = 132 bits (333), Expect = 9e-29, Method: Compositional matrix adjust. Identities = 120/435 (27%), Positives = 205/435 (47%), Gaps = 32/435 (7%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWR--QHGISARQSH---FIYASL 65 + W RNDLR+ DN +L A +SD +++ V++ + ++ + G S H ++ L Sbjct: 4 IYWFRNDLRVIDNLSLNEAIESSD-EILFVYMQDVQSFKDTEWGFSRMGPHRKLYLSQGL 62 Query: 66 LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQY-EINEVRRDKLLE 124 +Q+ LS G Y+ DD+++ L + V K +R Y E + + E Sbjct: 63 NALQEKLSNYGHSLNYY----LDDTVD-----GLLKLVEKFHIDRIYCESIDSHEELDQE 113 Query: 125 KRLQ-HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIR 183 RL+ H+V S+ S L I + + V+T FRK + V+ SL I Sbjct: 114 IRLRGHKVDLYSYYQSGLFLNDQIPFNLNDLPDVFTKFRKEIESREVKPIKPSLINQRIN 173 Query: 184 LTGPVTPSNIPRF----FDYP---FQAIDPMFPIGEQNALHILRK-FCKEKVYYYVEQR- 234 + YP F + F GE+ L F K Y + R Sbjct: 174 AIKSIVDEESNEIEMEQMSYPKSSFPISEDRFFGGEEKGFTFLEAYFSSNKPSTYKKTRN 233 Query: 235 DIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLN-ELIWREFYRH 293 ++ I +++ SP+L+ G +S RQ ++ L ++++ K+ + W+ EL+WRE++R Sbjct: 234 ELMGIDFSTKFSPWLASGYISARQVYDFLLSYELNVI---KNESTYWIFFELLWREYFRL 290 Query: 294 LMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRL 353 + Y + + +++ + D + + WK+G T I+A M++L G++ NR+ Sbjct: 291 IFKKYGKKIFHRYGLGLSDEKVSHSDENF-ELWKEGRTASNFINAGMKELKETGFLSNRM 349 Query: 354 RMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTI 413 R I AS+LV +L DWR G +F SQL+D D++SN+ W + A G D R FN Sbjct: 350 RQIVASYLVNELSCDWRAGAAWFESQLIDYDVSSNHCNWAYIAGHGTDPRG-GRYFNIQK 408 Query: 414 QGKRFDPQGTFIRHW 428 Q +DP G++ + W Sbjct: 409 QKSTYDPYGSYEKLW 423 >gi|109896483|ref|YP_659738.1| deoxyribodipyrimidine photolyase [Pseudoalteromonas atlantica T6c] gi|109698764|gb|ABG38684.1| deoxyribodipyrimidine photo-lyase (single-stranded DNA-specific) [Pseudoalteromonas atlantica T6c] Length = 445 Score = 132 bits (333), Expect = 9e-29, Method: Compositional matrix adjust. Identities = 128/441 (29%), Positives = 198/441 (44%), Gaps = 51/441 (11%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQ-HGISARQSH----FIYASL 65 + W R+DLR+ DN AL A D +++ VFI P ++ H SA F+ SL Sbjct: 13 IFWFRHDLRLHDNPALVALSEQVD-ELLCVFIIDPRWFKSSHFQSAHMGDKRWAFLQQSL 71 Query: 66 LQVQKSLSQKG---IVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQY--EINEVRRD 120 ++Q+ L ++G V + D I + + Y RQ + + + Sbjct: 72 SELQRHLQEQGQQLFVLEGETLEVLDALIGSYTPDIVASGMHPGVYERQQWQRVKQGNPN 131 Query: 121 KLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKAL--IQNLVQADLRSLP 178 L + H L P ++ + +TPFRK + +Q V + Sbjct: 132 TLFIQENGHS----------LFQPATLPFEIEYLPASFTPFRKRVEDLQVAVALPAPTAL 181 Query: 179 VPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRK--FCKEKVYYYVEQRD- 235 PA L + + P P +AI F GE AL L F + Y + R+ Sbjct: 182 PPAPDLAWLSSKNVNP-----PKKAIGLAFTGGEDAALAQLEYTLFTSHNIKNYKQTRNG 236 Query: 236 IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLN-ELIWREFYR-H 293 + +S+LSP+L+ G LS RQ + L+ + K+ + WL EL+WRE+++ H Sbjct: 237 LDGWDYSSKLSPWLANGCLSVRQVFTELRRYESEY---EKNDSTYWLYFELLWREYFQWH 293 Query: 294 LMAF------YPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIG 347 L + + +P + + W QG T +PI++A M+QLN G Sbjct: 294 LFKYQSKLFQFSGTQDTRPLTTFV--------ALRFAMWCQGETPYPIVNACMKQLNHTG 345 Query: 348 WMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFR 407 +M NR R + AS LV +L VDWR G YF QL+D D+ASN G WQ+ + G D + R Sbjct: 346 YMSNRGRQLVASCLVNELGVDWRFGAAYFEQQLVDFDVASNWGNWQYLSGVGVDPRGH-R 404 Query: 408 IFNPTIQGKRFDPQGTFIRHW 428 F+ Q +++DP G F+R W Sbjct: 405 RFDLAKQAQQYDPNGEFVRQW 425 >gi|283476381|emb|CAY26038.1| chryptochrome 1 [Acyrthosiphon pisum] Length = 553 Score = 132 bits (333), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 135/516 (26%), Positives = 220/516 (42%), Gaps = 82/516 (15%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M+V + W RN LR+ DN AL A HN+ K+I +FI + F+ SL+ Sbjct: 1 MTVAVHWFRNGLRLHDNPALIEA-HNNAEKLITLFIFDETTFNPKWYGYNPMRFLLESLI 59 Query: 67 QVQKSLSQKG---IVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYE---INEVRRD 120 + +L+ G + Q + + F +++++ F + + + R + Sbjct: 60 DLNNNLALVGGRLYILQGNPVNIFK---------MIKEKIGLHFITYEQDCAHLGRTRDE 110 Query: 121 KLLEKRLQHRVICKSFDDSVLLPPGSIL---------------NHALQMYKVYTPFRKA- 164 K+ ++ + C L P SI+ N A Q+ +P Sbjct: 111 KVKSFCDENDIKCIETVSHTLWNPKSIIEKNGGVPPFTFKQFQNTAKQIGHPPSPVGNVD 170 Query: 165 ----LIQNL---VQADLRSL--PVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNA 215 + + L +Q + ++L P P P P N+ + + GE A Sbjct: 171 WLSVIFEELPASIQDEFKNLHNPTPETFGIYPEVPENLTSTYRWYG---------GETRA 221 Query: 216 LHILRK---FCKEKV---YYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVD 269 L L++ + KE +Y Q + + S LS L G LS R+ + L + F++ Sbjct: 222 LEQLKERLEYEKEAFVNGFYLPNQVNPDLLSPPSSLSAALRYGCLSIRKFYWELTKLFIN 281 Query: 270 LLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPF-----------IPWTEKIEWNK 318 +S ++LIWR++ FY K F IPW + I+ + Sbjct: 282 KFEGDLLPMYSVTSQLIWRDY------FYTMSIDNKNFGQIEDNPACISIPWND-IKIPE 334 Query: 319 DSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFM 377 + +L+ WK G TG+P IDA MRQL GW+H+ +R ASFL + DL + W G +FM Sbjct: 335 NKKMLECWKTGKTGYPFIDAGMRQLMQEGWIHHVVRNSLASFLTRGDLWISWVEGLNHFM 394 Query: 378 SQLLDGDLASNNGGWQW-AASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVP 436 LLD D + +G W W ++ST + P G R DP G +I+ ++PEL N+P Sbjct: 395 KYLLDADFSVCSGNWIWVSSSTFEQLLDCPLCVCPVSYGLRLDPSGEYIKRYVPELKNMP 454 Query: 437 TQYIHAPHSWLDKND------LSLNYPLPIVDHKKA 466 Q+++ P + + +YP IVDH A Sbjct: 455 AQFLYEPWKCPESVQKQVGCIIGKDYPNCIVDHTIA 490 >gi|149067374|gb|EDM17107.1| cryptochrome 1 (photolyase-like) [Rattus norvegicus] Length = 555 Score = 132 bits (333), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 137/496 (27%), Positives = 204/496 (41%), Gaps = 56/496 (11%) Query: 7 MSVHLV-WLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASL 65 M V+ V W R LR+ DN AL +D + V+I P + + F+ L Sbjct: 1 MGVNAVHWFRKGLRLHDNPALKECIQGADT-IRCVYILDPWFAGSSNVGINRWRFLLQCL 59 Query: 66 LQVQ---KSLSQKGIVFQYHQCSNFDDSI-EWLDSYCLQQRVTKLFYNRQYEINEVRRDK 121 + + L+ + V + F EW +TKL E RD Sbjct: 60 EDLDANLRKLNSRLFVIRGQPADVFPRLFKEW--------NITKLSIEYDSEPFGKERDA 111 Query: 122 LLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPA 181 ++K + S L L+ +++ P Q LV + + L +PA Sbjct: 112 AIKKLATEAGVEVIVRISHTL---YDLDKIIELNGGQPPLTYKRFQTLV-SKMEPLEMPA 167 Query: 182 IRLTGPV-----TP--------SNIPRFFDYPFQA---IDPMFPIGEQNALHILRKFCKE 225 +T V TP +P + F ++P GE AL L + + Sbjct: 168 DTITSDVIGKCTTPLSDDHDEKYGVPSLEELGFDTDGLSSAVWPGGETEALTRLERHLER 227 Query: 226 KVYYYVEQRDIPAIQGTS------QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAF 279 K + V + P + S LSPYL G LS R + +L + + + K S Sbjct: 228 KAW--VANFERPRMNANSLLASPTGLSPYLRFGCLSCRLFYFKLTDLYKKVK-KNSSPPL 284 Query: 280 SWLNELIWREFYRHLMAFYPSV--CMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIID 337 S +L+WREF+ P G P +I W+K+ L W +G TGFP ID Sbjct: 285 SLYGQLLWREFFYTAATNNPRFDKMEGNPIC---VQIPWDKNPEALAKWAEGRTGFPWID 341 Query: 338 AAMRQLNTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAA 396 A M QL GW+H+ R A FL + DL + W G + F LLD D + N G W W Sbjct: 342 AIMTQLRQEGWIHHLARHAVACFLTRGDLWISWEEGMKVFEELLLDADWSINAGSWMW-L 400 Query: 397 STGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSW------LDKN 450 S + +F + P G+R DP G +IR +LP L P +YI+ P + + K Sbjct: 401 SCSSFFQQFFHCYCPVGFGRRTDPNGDYIRRYLPVLRGFPAKYIYDPWNAPEGIQKVAKC 460 Query: 451 DLSLNYPLPIVDHKKA 466 + +NYP P+V+H +A Sbjct: 461 LIGVNYPKPMVNHAEA 476 >gi|51944883|gb|AAU14170.1| cryptochrome [Bactrocera tryoni] Length = 547 Score = 132 bits (333), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 128/499 (25%), Positives = 215/499 (43%), Gaps = 63/499 (12%) Query: 6 AMSVHLVWLRNDLRITDNKALYAACHNSDAKV--IAVFIATPEQWRQHGISARQSHFIYA 63 A +++W R+ LR+ DN AL A + + I +FI E + + F+ Sbjct: 2 AKRANVMWFRHGLRLHDNPALLEAISDKTEGIALIPLFIFDGESAGTKTVGYNRMSFLLN 61 Query: 64 SLLQVQKSL---------SQKGIVFQYHQCSNFDDSIEW--LDSYCLQQRVTKLFYNRQY 112 SL ++ K L + K +FQ + + F E+ L+ C +Q ++ R Sbjct: 62 SLAEIDKQLKAIRGASDIAGKLYLFQGNPTTVFRRLNEYYRLNKICFEQDCEPIWNRRDD 121 Query: 113 EINEVRRDKLLEKRLQHRVICKSFD-DSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQ 171 + + D L+ +V +D +V+ G I QM+ A + + Sbjct: 122 SVRALCND--LDIEAVEKVSHTLWDPRTVISTNGRIPPLTYQMFLHTVEIIGAPPRPVED 179 Query: 172 ADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPI------------GEQNAL-HI 218 + V ++LT + + F+ +P +FP GEQ AL H+ Sbjct: 180 PEWDG--VEFLKLTDNML-MELNAFWQFPTPEDFNIFPDNISYVAKVKWRGGEQQALLHL 236 Query: 219 LRKFCKEK-----VYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIK 273 + E+ YY Q + ++ +S +L G LS R+ + + + F + I+ Sbjct: 237 AERLKVEERAFKNGYYLPNQANPNILESPKSMSAHLRFGCLSVRRFYWSVHDLFKHVQIE 296 Query: 274 P------KSGAFSWLNELIWREFYRHLMAFYP--------SVCMGKPFIPWTEKIEWNKD 319 +G +LIWRE++ + P +C+ P+ P + Sbjct: 297 AFYHRIHMAGGEHITGQLIWREYFYTMSVNNPYYDRMEGNEICLNIPWAP--------PN 348 Query: 320 SHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLL-VDWRIGEEYFMS 378 LQ+W+ G TGFP+IDAAMRQL GW+H+ LR A+FL + L W G +F+ Sbjct: 349 QEQLQSWRSGQTGFPLIDAAMRQLLAEGWLHHTLRNTVATFLTRGALWQSWEHGLRHFLK 408 Query: 379 QLLDGDLASNNGGWQWAASTGNDSVPYFRIFN-PTIQGKRFDPQGTFIRHWLPELNNVPT 437 LLD D + G W W +S+ + + + + P KR DP+G +IR ++PEL +P Sbjct: 409 YLLDADWSVCAGNWMWVSSSAFERLLDSSLVSCPIAFSKRLDPKGEYIRQYVPELAKIPQ 468 Query: 438 QYIHAPHSWLDKNDLSLNY 456 +YIH P W ++ NY Sbjct: 469 EYIHEP--WRMPQEMQENY 485 >gi|283806550|ref|NP_001164532.1| chryptochrome 1 [Acyrthosiphon pisum] Length = 553 Score = 132 bits (333), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 135/516 (26%), Positives = 220/516 (42%), Gaps = 82/516 (15%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M+V + W RN LR+ DN AL A HN+ K+I +FI + F+ SL+ Sbjct: 1 MTVAVHWFRNGLRLHDNPALIEA-HNNAEKLITLFIFDETTFNPKWYGYNPMRFLLXSLI 59 Query: 67 QVQKSLSQKG---IVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYE---INEVRRD 120 + +L+ G + Q + + F +++++ F + + + R + Sbjct: 60 DLNNNLALVGGRLYILQGNPVNIFK---------MIKEKIGLHFITYEQDCAHLGRTRDE 110 Query: 121 KLLEKRLQHRVICKSFDDSVLLPPGSIL---------------NHALQMYKVYTPFRKA- 164 K+ ++ + C L P SI+ N A Q+ +P Sbjct: 111 KVKSFCDENDIKCIETVSHTLWNPKSIIEKNGGVPPFTFKQFQNTAKQIGHPPSPVGNVD 170 Query: 165 ----LIQNL---VQADLRSL--PVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNA 215 + + L +Q + ++L P P P P N+ + + GE A Sbjct: 171 WLSVIFEELPASIQDEFKNLHNPTPETFGIYPEVPENLTSTYRWYG---------GETRA 221 Query: 216 LHILRK---FCKEKV---YYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVD 269 L L++ + KE +Y Q + + S LS L G LS R+ + L + F++ Sbjct: 222 LEQLKERLEYEKEAFVNGFYLPNQVNPDLLSPPSSLSAALRYGCLSIRKFYWELTKLFIN 281 Query: 270 LLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPF-----------IPWTEKIEWNK 318 +S ++LIWR++ FY K F IPW + I+ + Sbjct: 282 KFEGDLLPMYSVTSQLIWRDY------FYTMSIDNKNFGQIEDNPACISIPWND-IKIPE 334 Query: 319 DSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFM 377 + +L+ WK G TG+P IDA MRQL GW+H+ +R ASFL + DL + W G +FM Sbjct: 335 NKKMLECWKTGKTGYPFIDAGMRQLMQEGWIHHVVRNSLASFLTRGDLWISWVEGLNHFM 394 Query: 378 SQLLDGDLASNNGGWQW-AASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVP 436 LLD D + +G W W ++ST + P G R DP G +I+ ++PEL N+P Sbjct: 395 KYLLDADFSVCSGNWIWVSSSTFEQLLDCPLCVCPVSYGLRLDPSGEYIKRYVPELKNMP 454 Query: 437 TQYIHAPHSWLDKND------LSLNYPLPIVDHKKA 466 Q+++ P + + +YP IVDH A Sbjct: 455 AQFLYEPWKCPESVQKQVGCIIGKDYPNCIVDHTIA 490 >gi|281348773|gb|EFB24357.1| hypothetical protein PANDA_011308 [Ailuropoda melanoleuca] Length = 580 Score = 132 bits (333), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 139/497 (27%), Positives = 208/497 (41%), Gaps = 61/497 (12%) Query: 6 AMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASL 65 A SVH W R LR+ DN AL AA + V V+I P + + F+ SL Sbjct: 10 ASSVH--WFRKGLRLHDNPALLAAVRGARC-VRCVYILDPWFAASSSVGINRWRFLLQSL 66 Query: 66 LQVQKSLSQ---KGIVFQYHQCSNFDDSI-EWLDSYCLQQRVTKLFYNRQYEINEVRRDK 121 + SL + + V + F EW VT+L + E RD Sbjct: 67 EDLDTSLRKLNSRLFVVRGQPTDVFPRLFKEW--------GVTRLTFEYDSEPFGKERDA 118 Query: 122 LLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLV-QADLRSLPVP 180 + K + + ++S L L+ +++ P Q ++ + +L PV Sbjct: 119 AIMKMAKEAGVEVVTENSHTL---YDLDKIIELNGQKPPLTYKRFQAIISRMELPKKPVG 175 Query: 181 AI------RLTGPVTPS-----NIPRF--FDYPFQAIDP-MFPIGEQNALHILRKFCKEK 226 ++ + S +P +P + + P ++ GE AL L K + K Sbjct: 176 SVTSQQMESCRADIQESHDDTYGVPSLEELGFPTEGLGPAVWQGGETEALARLDKHLERK 235 Query: 227 VYYYVEQRDIPAIQGTS------QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGA-- 278 + V + P + S LSPYL G LS R + RL DL K K + Sbjct: 236 AW--VANYERPRMNANSLLASPTGLSPYLRFGCLSCRLFYYRL----WDLYKKVKRNSTP 289 Query: 279 -FSWLNELIWREFYRHLMAFYPSV--CMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPI 335 S +L+WREF+ P G P +I W+++ L W +G TGFP Sbjct: 290 PLSLFGQLLWREFFYTAATNNPRFDRMEGNPI---CIQIPWDRNPEALAKWAEGKTGFPW 346 Query: 336 IDAAMRQLNTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQW 394 IDA M QL GW+H+ R A FL + DL V W G F LLD D + N G W W Sbjct: 347 IDAIMTQLRQEGWIHHLARHAVACFLTRGDLWVSWESGVRVFDELLLDADFSVNAGSWMW 406 Query: 395 AASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLD------ 448 + + +F + P G+R DP G +IR +LP L P++YI+ P + + Sbjct: 407 LSCSAFFQQ-FFHCYCPVGFGRRTDPSGDYIRRYLPILKGFPSRYIYEPWNAPESIQKAA 465 Query: 449 KNDLSLNYPLPIVDHKK 465 K + ++YP PIV+H + Sbjct: 466 KCIIGVDYPRPIVNHAE 482 >gi|284506739|dbj|BAI67363.1| cryptochrome [Bactrocera cucurbitae] Length = 547 Score = 132 bits (333), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 136/509 (26%), Positives = 217/509 (42%), Gaps = 69/509 (13%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKV--IAVFIATPEQWRQHGISARQSHFIYASLL 66 +++W + LR+ DN AL A + + I +FI E + + F+ SL Sbjct: 5 ANVLWFXHGLRLHDNPALLEAISDKSEGIALIPLFIFDGESAGTKTVGYNRMSFLLNSLA 64 Query: 67 QVQKSL---------SQKGIVFQYHQCSNFDDSIEW--LDSYCLQQRVTKLFYNRQYEIN 115 + K L S K +FQ + + F E+ L+ C +Q ++ R + Sbjct: 65 DIDKQLKAIRGASDISGKLYLFQGNPATVFRRLSEYYRLNKICFEQDCEPIWNRRDDSVR 124 Query: 116 EVRRDKLLEKRLQHRVICKSFD-DSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADL 174 + D L+ +V +D +V+ G I QM+ + + D Sbjct: 125 SLCND--LDIEAVEKVSHTLWDPRTVISTNGGIPPLTYQMFLHTVEIIGVPPRPVEDPDW 182 Query: 175 RSLPVPAIRLTGPV-----------TPSNIPRFFDYPFQAIDPMFPIGEQNAL-HILRKF 222 V ++LT + TP + + D + GEQ AL H+ + Sbjct: 183 DG--VEFLKLTDNMLMELNAFWRFPTPEDFNVYPDNVSYVAKVKWHGGEQQALLHLDERL 240 Query: 223 CKEK-----VYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKP--- 274 E+ YY Q + ++ +S +L G LS R+ + + + F + I+ Sbjct: 241 KVEERAFKNGYYLPNQANPNILESPKSMSAHLRFGCLSVRRFYWSVHDLFKHVQIEALRQ 300 Query: 275 ---KSGAFSWLNELIWREFYRHLMAFYP--------SVCMGKPFIPWTEKIEWNKDSHLL 323 +G +LIWRE++ + P ++C+ IPW NK+ L Sbjct: 301 RVHMAGGEHITGQLIWREYFYTMSVNNPYYDRMEGNAICLN---IPWAAP---NKEQ--L 352 Query: 324 QAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLL-VDWRIGEEYFMSQLLD 382 Q+W+ G TGFP+IDAAMRQL GW+H+ LR A+FL + L W G +F+ LLD Sbjct: 353 QSWRSGQTGFPLIDAAMRQLLAEGWLHHTLRNTVATFLTRGALWQSWEHGLRHFLKYLLD 412 Query: 383 GDLASNNGGWQWAASTGNDSVPYFRIFN-PTIQGKRFDPQGTFIRHWLPELNNVPTQYIH 441 D + G W W +S+ + + + + P KR DP+G +IR ++PEL NVP +YIH Sbjct: 413 ADWSVCAGNWMWVSSSAFERLLDSSLVSCPIAFSKRLDPKGEYIRQYVPELANVPQEYIH 472 Query: 442 APHSWLDKNDLSLN--------YPLPIVD 462 P W +L N YP IVD Sbjct: 473 EP--WRMPQELQENCECVIGVQYPERIVD 499 >gi|283806654|ref|NP_001164573.1| chryptochrome 2-2 [Acyrthosiphon pisum] gi|283476385|emb|CAY26040.1| chryptochrome 2-2 [Acyrthosiphon pisum] Length = 512 Score = 132 bits (333), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 137/507 (27%), Positives = 207/507 (40%), Gaps = 55/507 (10%) Query: 8 SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67 +VH W R LRI DN +L N+ +FI P + + F+ L Sbjct: 6 TVH--WFRKGLRIHDNPSLREGLINAKT-FRCIFILDPWFAGASNVGINKWRFLLQCLSD 62 Query: 68 VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127 + SL + + E L Q T + E RD+ + Sbjct: 63 LDNSLKKLNSRLFVIK----GQPAEALPKLFRQWGTTNFTFEEDPEPFGRVRDQNI---- 114 Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKV---YTPFRKALIQNLVQA-DLRSLPVPAIR 183 +V+C SV+ L ++ V P L Q L++ D VP+I Sbjct: 115 --KVMCSEMGISVITRCSHTLYQLDKIINVNGGKAPLTYHLFQKLLECIDPPERAVPSID 172 Query: 184 ---LTGPVTPS--------NIPRFFDYPFQAIDPM----FPIGEQNALHILRKFCKEKVY 228 L TP +P + F+ I+ + + GE AL L+ + K + Sbjct: 173 KEFLGNAFTPIKYDHDEIFGVPTLEELGFKEINNITRHVWVGGETEALIRLQCHLERKAF 232 Query: 229 Y--YVEQRDIPA--IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNE 284 + + + P + + L+PYL G LS R ++ L E + I+ S + Sbjct: 233 IASFGKPKMTPQSLVASPTGLAPYLKFGCLSTRLFFSELNELYKK--IRKSQPPLSLHGQ 290 Query: 285 LIWREFYRHLMAFYPSV--CMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQ 342 L+WR+F+ P+ +G P +I W+K+ L W G TG+P IDA M Q Sbjct: 291 LLWRDFFYCASTNNPNFDRMVGNPI---CVQIPWDKNPRALSKWANGQTGYPWIDAIMIQ 347 Query: 343 LNTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGND 401 L GW+H R A FL + DL + W G + F LLD D + N G W W S + Sbjct: 348 LRQEGWIHCIARHAVACFLTRGDLWLSWEEGMKVFDELLLDADWSVNAGYWMW-YSCSSF 406 Query: 402 SVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND--------LS 453 + + P G++ DP G +IR ++P LNN+P QYIH P WL + Sbjct: 407 YQEFIHCYCPVRFGRKVDPNGDYIRRYIPALNNMPNQYIHEP--WLAPESIQFSANCIIG 464 Query: 454 LNYPLPIVDHKKACHHTLNQYYAAKKQ 480 ++YPLPIV+H A L + A +Q Sbjct: 465 IDYPLPIVNHINASKINLERMKLAYQQ 491 >gi|213422286|ref|ZP_03355352.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp. enterica serovar Typhi str. E01-6750] Length = 161 Score = 132 bits (333), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 68/151 (45%), Positives = 92/151 (60%), Gaps = 5/151 (3%) Query: 177 LPVPAIRLTGPVTPSNIPRFFDYPFQAIDP-MFPIGEQNALHILRKFCKEKVYYYVEQRD 235 +P P IR++G ++ P +YP QA D +FP+ E + LR FC + Y +RD Sbjct: 13 VPAPKIRVSGALSIPLTPVSLNYPQQAFDAALFPVEENAVIAQLRHFCSQGADEYASRRD 72 Query: 236 IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFS-WLNELIWREFYRHL 294 PA+ GTS+LS L+ G LSPRQC +RL E L G S WLNELIWREFYRHL Sbjct: 73 FPAVDGTSRLSASLATGGLSPRQCLHRLLAEQPQAL---DGGPGSVWLNELIWREFYRHL 129 Query: 295 MAFYPSVCMGKPFIPWTEKIEWNKDSHLLQA 325 M +YP++C +PFI WT+++ W ++ HL Sbjct: 130 MTWYPALCKHQPFIRWTKRVAWQENPHLFSG 160 >gi|149195753|ref|ZP_01872810.1| Deoxyribodipyrimidine photolyase [Lentisphaera araneosa HTCC2155] gi|149141215|gb|EDM29611.1| Deoxyribodipyrimidine photolyase [Lentisphaera araneosa HTCC2155] Length = 481 Score = 132 bits (332), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 128/477 (26%), Positives = 212/477 (44%), Gaps = 50/477 (10%) Query: 8 SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67 +++VWL+ DLR+ D+ L AA S+ + ++ P +S +FIY SL++ Sbjct: 3 EINVVWLKRDLRLNDHACL-AAAEASELPYLIMYCFEPSLMNAPDVSENHLNFIYLSLME 61 Query: 68 VQKSLSQ-KGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEV-RRDKLLEK 125 +Q L+ ++ H D+ + L + +++ LF ++++ +RD+ Sbjct: 62 MQTKLAPFNRPLYILHA-----DATQALGYIQKKYQISTLFAHQEHGTARTWKRDR---- 112 Query: 126 RLQHRVICKSFDDSVLLPPGSILNHALQMY----KVYTPFRKALIQNLVQADLRSLPVPA 181 Q C + +L S + +Q K + + K ++V+ P Sbjct: 113 --QVIDFCWQEEIELLEAEHSGIQRGIQNRDHWDKAWFSWHKT---DIVRNSYSISPFNF 167 Query: 182 IRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKE--KVYYYVEQRDIPAI 239 + P F YP Q P GE A H L+ F E K Y+ + + Sbjct: 168 DKSLFPAALQFKKTFKTYPKQMQAP----GENTAHHYLKSFLAERGKNYHRFISKPSESR 223 Query: 240 QGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFS-WLNELIWREFY---RHLM 295 + +LSPYL+ G +S RQ + +K K A+S L L WR + + Sbjct: 224 KSCGRLSPYLAWGNVSSRQVYQLVK---ASPKYKDNKRAYSGLLTRLKWRSHFIQKFEVE 280 Query: 296 AFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRM 355 Y +C+ K + E + + ++ ++AWK G TG+P++DA MR L+ GW++ R+R Sbjct: 281 CSYEYLCLNKGY----ELMSLDFNAEFIEAWKDGKTGYPLVDACMRCLHATGWINFRMRA 336 Query: 356 ITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQW-AASTGNDSVPYFRIFNPTIQ 414 + SF L DWR G + LD + + +Q A +TG ++V RI+NP Q Sbjct: 337 MLTSFFCHHLAQDWRDGVYHLAKLFLDYEPGIHFPQFQMQAGTTGINTV---RIYNPIKQ 393 Query: 415 GKRFDPQGTFIRHWLPELNNVPTQYIHAP-------HSWLDKNDLSLNYPLPIVDHK 464 DP+G FIR W+PEL ++ IH P +L L YP PI+D K Sbjct: 394 SMDNDPEGEFIRQWIPELKDLSNDEIHEPWKIEIMEAKMKGYTNLHL-YPAPIIDIK 449 >gi|301773864|ref|XP_002922356.1| PREDICTED: cryptochrome-2-like, partial [Ailuropoda melanoleuca] Length = 581 Score = 132 bits (332), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 139/497 (27%), Positives = 208/497 (41%), Gaps = 61/497 (12%) Query: 6 AMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASL 65 A SVH W R LR+ DN AL AA + V V+I P + + F+ SL Sbjct: 10 ASSVH--WFRKGLRLHDNPALLAAVRGARC-VRCVYILDPWFAASSSVGINRWRFLLQSL 66 Query: 66 LQVQKSLSQ---KGIVFQYHQCSNFDDSI-EWLDSYCLQQRVTKLFYNRQYEINEVRRDK 121 + SL + + V + F EW VT+L + E RD Sbjct: 67 EDLDTSLRKLNSRLFVVRGQPTDVFPRLFKEW--------GVTRLTFEYDSEPFGKERDA 118 Query: 122 LLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLV-QADLRSLPVP 180 + K + + ++S L L+ +++ P Q ++ + +L PV Sbjct: 119 AIMKMAKEAGVEVVTENSHTL---YDLDKIIELNGQKPPLTYKRFQAIISRMELPKKPVG 175 Query: 181 AI------RLTGPVTPS-----NIPRF--FDYPFQAIDP-MFPIGEQNALHILRKFCKEK 226 ++ + S +P +P + + P ++ GE AL L K + K Sbjct: 176 SVTSQQMESCRADIQESHDDTYGVPSLEELGFPTEGLGPAVWQGGETEALARLDKHLERK 235 Query: 227 VYYYVEQRDIPAIQGTS------QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGA-- 278 + V + P + S LSPYL G LS R + RL DL K K + Sbjct: 236 AW--VANYERPRMNANSLLASPTGLSPYLRFGCLSCRLFYYRL----WDLYKKVKRNSTP 289 Query: 279 -FSWLNELIWREFYRHLMAFYPSV--CMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPI 335 S +L+WREF+ P G P +I W+++ L W +G TGFP Sbjct: 290 PLSLFGQLLWREFFYTAATNNPRFDRMEGNPI---CIQIPWDRNPEALAKWAEGKTGFPW 346 Query: 336 IDAAMRQLNTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQW 394 IDA M QL GW+H+ R A FL + DL V W G F LLD D + N G W W Sbjct: 347 IDAIMTQLRQEGWIHHLARHAVACFLTRGDLWVSWESGVRVFDELLLDADFSVNAGSWMW 406 Query: 395 AASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLD------ 448 + + +F + P G+R DP G +IR +LP L P++YI+ P + + Sbjct: 407 LSCSAFFQQ-FFHCYCPVGFGRRTDPSGDYIRRYLPILKGFPSRYIYEPWNAPESIQKAA 465 Query: 449 KNDLSLNYPLPIVDHKK 465 K + ++YP PIV+H + Sbjct: 466 KCIIGVDYPRPIVNHAE 482 >gi|289741509|gb|ADD19502.1| deoxyribodipyrimidine photolyase/cryptochrome [Glossina morsitans morsitans] Length = 536 Score = 132 bits (332), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 127/510 (24%), Positives = 229/510 (44%), Gaps = 55/510 (10%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKV--IAVFIATPEQWRQHGISARQSHFIYAS 64 MSV+++W R+ LR+ DN AL A + + + + +FI E + F+ S Sbjct: 1 MSVNVLWFRHGLRLHDNPALLEALADREKGIALVPIFIFDGESAGTKCTGYNRLRFLLDS 60 Query: 65 LLQVQKSL-SQKG--IVFQYHQCSNFDDSIEW--LDSYCLQQRVTKLFYNRQYEINEVRR 119 L + Q+G FQ + + F + E ++ C++Q ++ R ++ + Sbjct: 61 LRDLDDQFRCQRGRLYTFQGNPTTIFKELHECFGINKLCVEQDCEPIWNRRDNDVKVLCN 120 Query: 120 DKLLE--KRLQHRVIC--KSFDDSVLLPPGS--ILNHALQMYKVYTPFRKALIQNLVQAD 173 + ++ +++ H + + + +PP + + H +Q+ + P R A N D Sbjct: 121 ELGIKWVEKISHTLWNPRQVIQTNGGIPPLTYQMFLHTVQV--IGLPPRPAENANWKGVD 178 Query: 174 LRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPI----GEQNALHILRKFCK----- 224 + ++ + T P F+ + ++ + + GE AL +L + K Sbjct: 179 ILNINETILEKLPGFTEIPQPEQFNVFAEDLNRLALVKWKGGETEALILLEERLKVEGEA 238 Query: 225 -EKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLN 283 ++ YY Q + ++ +SP+L G LS R+ + + + F D+ K F ++ Sbjct: 239 FKRGYYLPNQANPNILETPKSMSPHLRFGCLSVRKFYWAVHDLFEDVQQHVKMFGFQIMS 298 Query: 284 ------ELIWREFYRHLMAFYP--------SVCMGKPFIPWTEKIEWNKDSHLLQAWKQG 329 +LIWRE++ + P +C+ P+ P + L+ WK G Sbjct: 299 GAHITGQLIWREYFYTMSVNNPYYDRMEENEICLNIPWAP--------VNDEQLENWKLG 350 Query: 330 YTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASN 388 TGFP++DAAMRQL GW+H+ LR A+FL + L +W G ++F+ LLD D + Sbjct: 351 KTGFPLVDAAMRQLLAEGWIHHTLRNTVATFLTRGGLWFNWEHGLQHFLKYLLDADWSVC 410 Query: 389 NGGWQWAASTGNDSVPYFRIFN-PTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAP---- 443 G W W +S+ + + + P KR DP G +I+ ++PEL +VP +YIH P Sbjct: 411 AGNWMWVSSSAFERLLDSSLVTCPLAMAKRLDPFGQYIKQYVPELAHVPKEYIHEPWRMP 470 Query: 444 --HSWLDKNDLSLNYPLPIVDHKKACHHTL 471 K + +YP I+D KA + Sbjct: 471 LSEQKRSKCIIGEHYPKRIIDFVKAAESNM 500 >gi|73983386|ref|XP_540761.2| PREDICTED: similar to cryptochrome 2 (photolyase-like) [Canis familiaris] Length = 593 Score = 132 bits (332), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 141/503 (28%), Positives = 207/503 (41%), Gaps = 73/503 (14%) Query: 6 AMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASL 65 A SVH W R LR+ DN AL AA + V V+I P + + F+ SL Sbjct: 22 ASSVH--WFRKGLRLHDNPALLAAVRGARC-VRCVYILDPWFAASSSVGINRWRFLLQSL 78 Query: 66 LQVQKSLSQ---KGIVFQYHQCSNFDDSI-EWLDSYCLQQRVTKLFYNRQYEINEVRRDK 121 + SL + + V + F EW VT+L + E RD Sbjct: 79 EDLDTSLRKLNSRLFVVRGQPADVFPRLFKEW--------GVTRLTFEYDSEPFGKERDA 130 Query: 122 LLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLV-QADLRSLPVP 180 + K + + ++S L L+ +++ P Q ++ + +L PV Sbjct: 131 AIMKMAKEAGVEVVTENSHTL---YDLDKIIELNGQKPPLTYKRFQAIISRMELPKKPV- 186 Query: 181 AIRLTGPVTPS-----------------NIPRF--FDYPFQAIDP-MFPIGEQNALHILR 220 G VT +P +P + + P ++ GE AL L Sbjct: 187 -----GSVTSQQMESCRADIQDNHDDTYGVPSLEELGFPTEGLGPAVWQGGETEALARLD 241 Query: 221 KFCKEKVYYYVEQRDIPAIQGTS------QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKP 274 K + K + V + P + S LSPYL G LS R + RL DL K Sbjct: 242 KHLERKAW--VANYERPRMNANSLLASPTGLSPYLRFGCLSCRLFYYRL----WDLYKKV 295 Query: 275 KSGA---FSWLNELIWREFYRHLMAFYPSV--CMGKPFIPWTEKIEWNKDSHLLQAWKQG 329 K + S +L+WREF+ P G P +I W+++ L W +G Sbjct: 296 KRNSTPPLSLFGQLLWREFFYTAATNNPRFDRMEGNPI---CIQIPWDRNPEALAKWAEG 352 Query: 330 YTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASN 388 TGFP IDA M QL GW+H+ R A FL + DL V W G F LLD D + N Sbjct: 353 KTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWVSWESGVRVFDELLLDADFSVN 412 Query: 389 NGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLD 448 G W W + + +F + P G+R DP G +IR +LP L P++YI+ P + + Sbjct: 413 AGSWMWLSCSAFFQQ-FFHCYCPVGFGRRTDPSGDYIRRYLPILKGFPSRYIYEPWNAPE 471 Query: 449 ------KNDLSLNYPLPIVDHKK 465 K + ++YP PIV+H + Sbjct: 472 SIQKAAKCIIGVDYPRPIVNHAE 494 >gi|80861398|ref|NP_942045.2| cryptochrome-1 [Rattus norvegicus] gi|118572250|sp|Q32Q86|CRY1_RAT RecName: Full=Cryptochrome-1 gi|78395116|gb|AAI07678.1| Cryptochrome 1 (photolyase-like) [Rattus norvegicus] Length = 588 Score = 132 bits (332), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 137/496 (27%), Positives = 204/496 (41%), Gaps = 56/496 (11%) Query: 7 MSVHLV-WLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASL 65 M V+ V W R LR+ DN AL +D + V+I P + + F+ L Sbjct: 1 MGVNAVHWFRKGLRLHDNPALKECIQGADT-IRCVYILDPWFAGSSNVGINRWRFLLQCL 59 Query: 66 LQVQ---KSLSQKGIVFQYHQCSNFDDSI-EWLDSYCLQQRVTKLFYNRQYEINEVRRDK 121 + + L+ + V + F EW +TKL E RD Sbjct: 60 EDLDANLRKLNSRLFVIRGQPADVFPRLFKEW--------NITKLSIEYDSEPFGKERDA 111 Query: 122 LLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPA 181 ++K + S L L+ +++ P Q LV + + L +PA Sbjct: 112 AIKKLATEAGVEVIVRISHTL---YDLDKIIELNGGQPPLTYKRFQTLV-SKMEPLEMPA 167 Query: 182 IRLTGPV-----TP--------SNIPRFFDYPFQA---IDPMFPIGEQNALHILRKFCKE 225 +T V TP +P + F ++P GE AL L + + Sbjct: 168 DTITSDVIGKCTTPLSDDHDEKYGVPSLEELGFDTDGLSSAVWPGGETEALTRLERHLER 227 Query: 226 KVYYYVEQRDIPAIQGTS------QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAF 279 K + V + P + S LSPYL G LS R + +L + + + K S Sbjct: 228 KAW--VANFERPRMNANSLLASPTGLSPYLRFGCLSCRLFYFKLTDLYKKVK-KNSSPPL 284 Query: 280 SWLNELIWREFYRHLMAFYPSV--CMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIID 337 S +L+WREF+ P G P +I W+K+ L W +G TGFP ID Sbjct: 285 SLYGQLLWREFFYTAATNNPRFDKMEGNPIC---VQIPWDKNPEALAKWAEGRTGFPWID 341 Query: 338 AAMRQLNTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAA 396 A M QL GW+H+ R A FL + DL + W G + F LLD D + N G W W Sbjct: 342 AIMTQLRQEGWIHHLARHAVACFLTRGDLWISWEEGMKVFEELLLDADWSINAGSWMW-L 400 Query: 397 STGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSW------LDKN 450 S + +F + P G+R DP G +IR +LP L P +YI+ P + + K Sbjct: 401 SCSSFFQQFFHCYCPVGFGRRTDPNGDYIRRYLPVLRGFPAKYIYDPWNAPEGIQKVAKC 460 Query: 451 DLSLNYPLPIVDHKKA 466 + +NYP P+V+H +A Sbjct: 461 LIGVNYPKPMVNHAEA 476 >gi|327272394|ref|XP_003220970.1| PREDICTED: cryptochrome-1-like isoform 1 [Anolis carolinensis] Length = 621 Score = 132 bits (332), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 136/495 (27%), Positives = 204/495 (41%), Gaps = 54/495 (10%) Query: 7 MSVHLV-WLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASL 65 M V+ V W R LR+ DN AL +D V V+I P + + F+ L Sbjct: 1 MGVNAVHWFRKGLRLHDNPALREVIQGADT-VRCVYILDPWFAGSSNVGINRWRFLLQCL 59 Query: 66 LQVQ---KSLSQKGIVFQYHQCSNFDDSI-EWLDSYCLQQRVTKLFYNRQYEINEVRRDK 121 + + L+ + V + F EW +TKL E RD Sbjct: 60 EDLDANLRKLNSRLFVIRGQPADVFPRLFKEW--------NITKLSIEYDSEPFGKERDA 111 Query: 122 LLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLV-QADLRSLPVP 180 ++K + S L L+ +++ P Q L+ + + +PV Sbjct: 112 AIKKLASEAGVEVIVRISHTL---YELDKIIELNGGQPPLTYKRFQTLISRMEPLEIPVE 168 Query: 181 AI------RLTGPVTPS-----NIPRFFDYPFQAI---DPMFPIGEQNALHILRKFCKEK 226 I + T PV+ +P + F ++P GE AL L + + K Sbjct: 169 TITAEVMSKCTTPVSDDHDEKYGVPSLEELGFDTDGLPSAVWPGGETEALTRLERHLERK 228 Query: 227 VYYYVEQRDIPAIQGTS------QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFS 280 + V + P + S LSPYL G LS R + +L + + + K S S Sbjct: 229 AW--VANFERPRMNANSLLASPTGLSPYLRFGCLSCRLFYFKLTDLYKKVK-KNSSPPLS 285 Query: 281 WLNELIWREFYRHLMAFYPSV--CMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDA 338 +L+WREF+ P G P +I W+++ L W +G TGFP IDA Sbjct: 286 LYGQLLWREFFYTAATNNPRFDKMEGNPIC---VQIPWDRNPEALAKWAEGRTGFPWIDA 342 Query: 339 AMRQLNTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAAS 397 M QL GW+H+ R A FL + DL + W G + F LLD D + N G W W S Sbjct: 343 IMTQLRQEGWIHHLARHAVACFLTRGDLWISWEEGMKVFEELLLDADWSVNAGSWMW-LS 401 Query: 398 TGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLD------KND 451 + +F + P G+R DP G +IR +LP L P +YI+ P + D K Sbjct: 402 CSSFFQQFFHCYCPVGFGRRTDPNGDYIRRYLPVLRGFPAKYIYDPWNAPDGVQKAAKCI 461 Query: 452 LSLNYPLPIVDHKKA 466 + +NYP P+V+H +A Sbjct: 462 IGVNYPKPMVNHAEA 476 >gi|55378668|ref|YP_136518.1| deoxyribodipyrimidine photolyase [Haloarcula marismortui ATCC 43049] gi|55231393|gb|AAV46812.1| deoxyribodipyrimidine photolyase [Haloarcula marismortui ATCC 43049] Length = 534 Score = 132 bits (332), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 85/253 (33%), Positives = 124/253 (49%), Gaps = 15/253 (5%) Query: 236 IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLM 295 + A GTS LSPYL+ G LS RQ + E D G +++ L W + Y + Sbjct: 238 VDARDGTSGLSPYLAFGCLSVRQVIQYIDEHAPD-----GRGKEMFVSRLFWNKHYEQKL 292 Query: 296 AFYPSVCMGKPFIPWTEKIEWNK-DSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLR 354 +P + P E + D L+ AWK G TGFP++DA+MR L GW++ R+R Sbjct: 293 EDWPG-WLETAVNPVLEGFNAEQYDPDLVAAWKHGQTGFPMVDASMRCLRQTGWLNFRMR 351 Query: 355 MITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQ 414 ++AS L WRIG ++F L+D A N QW + G P R++NP Q Sbjct: 352 SMSASVYYHLLQQPWRIGADWFYHHLIDASAAINYT--QWQSQCGLVGKPALRLYNPRKQ 409 Query: 415 GKRFDPQGTFIRHWLPELNNVPTQYIHAP-----HSWLDKN-DLSLNYPLPIVDHKKACH 468 + DP G FIR W+PEL ++P +Y+ P H D+ +YP P+VD+ A Sbjct: 410 VRDQDPDGEFIRQWVPELESLPDEYLDRPEQTPVHVQASCGVDIGDDYPHPVVDYDAARQ 469 Query: 469 HTLNQYYAAKKQS 481 +Y A + + Sbjct: 470 AFHRRYEAVRPDA 482 >gi|119503732|ref|ZP_01625814.1| deoxyribodipyrimidine photolyase, putative [marine gamma proteobacterium HTCC2080] gi|119460240|gb|EAW41333.1| deoxyribodipyrimidine photolyase, putative [marine gamma proteobacterium HTCC2080] Length = 490 Score = 132 bits (332), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 135/479 (28%), Positives = 208/479 (43%), Gaps = 45/479 (9%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 MS+ +VW + DLR+ D+ L AA ++ V+I PE + R HFI SL Sbjct: 1 MSLSVVWFKRDLRLADHAPLSAAV-ALGQPMLLVYIVEPELLKNPHYRRRHWHFIAQSLA 59 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEIN-EVRRDKLLEK 125 + L G + D I + QR+ LF + + RD+ + Sbjct: 60 DLNHQLQPHGTKVWVLE----GDPITLFTAINQSQRIHHLFSYEETGLEVTFARDREVIT 115 Query: 126 RLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185 + + +C + + G H + A + ++ A L +L L Sbjct: 116 WAKSQGVCWQEFPTNGVQRGR--KHRKGWNHRWGKLMAAPAETIIPAQLNAL---RSDLP 170 Query: 186 GPVTPSNIPRFFDYPFQAIDPMF-PIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGT-- 242 + + R + Q P F P GEQ A L F + Y QR I +G+ Sbjct: 171 EDLKGALCQRLGGWLPQ--HPNFQPGGEQQAHQTLEDFLTHRAGGY--QRHISKPEGSRQ 226 Query: 243 --SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWR-EFYRHLMAFYP 299 S+LSP+L+ G LS RQ LKE + K G L+ R ++ H + + Sbjct: 227 HCSRLSPHLAWGNLSIRQVQQALKER------QSKGGWARPLSAFESRLHWHCHFIQKFE 280 Query: 300 SVC------MGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRL 353 S C + + F+ + +++SHL+ AW +G TGFP +DA MR L G++H R Sbjct: 281 SECTMEFESINRGFLNYPR----DQNSHLVAAWCEGQTGFPYVDACMRCLEATGYLHFRA 336 Query: 354 RMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTI 413 R + SFL L DWR+G + S LD + + Q A G + RI+NP Sbjct: 337 RAMLVSFLTHHLWQDWRLGVTWLGSLFLDFEPGIHYPQMQMQA--GVTGINTIRIYNPVK 394 Query: 414 QGKRFDPQGTFIRHWLPELNNVPTQYIHAP--HSWLDKNDLSLNYPLPIVD----HKKA 466 Q DP +FIR W+PE+ ++PT +H P S L+ ++YP PIV+ H++A Sbjct: 395 QSLEHDPTASFIRRWVPEIADLPTPLVHQPWLRSPLEHVLHPVDYPEPIVNLDVSHRRA 453 >gi|224002573|ref|XP_002290958.1| predicted protein [Thalassiosira pseudonana CCMP1335] gi|220972734|gb|EED91065.1| predicted protein [Thalassiosira pseudonana CCMP1335] Length = 420 Score = 132 bits (331), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 92/283 (32%), Positives = 143/283 (50%), Gaps = 41/283 (14%) Query: 190 PSN-IPRFFDYPFQAID----------PMFPI----GEQNALHILRKFCKEK---VYYYV 231 P N +P FD + A D P+ GE AL ++ + +K Y+ Sbjct: 150 PKNYMPTLFDLGYNAEDIESVSSVDSRTALPVNYRGGETFALQRVKDYIWDKNLLKVYFD 209 Query: 232 EQRDIPAIQGTSQLSPYLSIGVLSPR----QCWNRLKEEFVDLLIKPKSGAFSWLN-ELI 286 + + +++ +P+L++G +SPR +C +R +E+ V ++ + W+ EL+ Sbjct: 210 TRNGMIGSDYSTKFAPWLALGNVSPRYIAREC-SRYEEQRV------QNKSTYWVVFELL 262 Query: 287 WREFYRHLM------AFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAM 340 R+ ++ FY + +GK +E+ +W D +QAW+ G TGFP++DA M Sbjct: 263 IRDHFKFFAKKHGDKVFYLTGTIGKQ--RGSERKKWGMDRKKIQAWQDGMTGFPLVDANM 320 Query: 341 RQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGN 400 R+L G+M NR R ASFL D+ +DWR G EYF LLD D+ SN G W AA Sbjct: 321 RELAATGFMSNRGRQNVASFLTIDMNMDWRYGGEYFEETLLDYDVHSNWGNWCSAAGMTG 380 Query: 401 DSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAP 443 + F I Q K +D G ++R W PEL NVP +Y+H+P Sbjct: 381 GRLNRFNIVK---QSKDYDFGGEYVRLWCPELKNVPDKYVHSP 420 >gi|6681031|ref|NP_031797.1| cryptochrome-1 [Mus musculus] gi|81882230|sp|P97784|CRY1_MOUSE RecName: Full=Cryptochrome-1 gi|5081813|gb|AAD39548.1|AF156986_1 cryptochrome 1 [Mus musculus] gi|1816439|dbj|BAA19175.1| photolyase/blue-light receptor homolog [Mus musculus] gi|18380944|gb|AAH22174.1| Cryptochrome 1 (photolyase-like) [Mus musculus] gi|55716088|gb|AAH85499.1| Cryptochrome 1 (photolyase-like) [Mus musculus] gi|74194028|dbj|BAE36931.1| unnamed protein product [Mus musculus] gi|148689469|gb|EDL21416.1| cryptochrome 1 (photolyase-like) [Mus musculus] Length = 606 Score = 132 bits (331), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 137/496 (27%), Positives = 204/496 (41%), Gaps = 56/496 (11%) Query: 7 MSVHLV-WLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASL 65 M V+ V W R LR+ DN AL +D + V+I P + + F+ L Sbjct: 1 MGVNAVHWFRKGLRLHDNPALKECIQGADT-IRCVYILDPWFAGSSNVGINRWRFLLQCL 59 Query: 66 LQVQ---KSLSQKGIVFQYHQCSNFDDSI-EWLDSYCLQQRVTKLFYNRQYEINEVRRDK 121 + + L+ + V + F EW +TKL E RD Sbjct: 60 EDLDANLRKLNSRLFVIRGQPADVFPRLFKEW--------NITKLSIEYDSEPFGKERDA 111 Query: 122 LLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPA 181 ++K + S L L+ +++ P Q LV + + L +PA Sbjct: 112 AIKKLATEAGVEVIVRISHTL---YDLDKIIELNGGQPPLTYKRFQTLV-SKMEPLEMPA 167 Query: 182 IRLTGPV-----TP--------SNIPRFFDYPFQA---IDPMFPIGEQNALHILRKFCKE 225 +T V TP +P + F ++P GE AL L + + Sbjct: 168 DTITSDVIGKCMTPLSDDHDEKYGVPSLEELGFDTDGLSSAVWPGGETEALTRLERHLER 227 Query: 226 KVYYYVEQRDIPAIQGTS------QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAF 279 K + V + P + S LSPYL G LS R + +L + + + K S Sbjct: 228 KAW--VANFERPRMNANSLLASPTGLSPYLRFGCLSCRLFYFKLTDLYKKVK-KNSSPPL 284 Query: 280 SWLNELIWREFYRHLMAFYPSV--CMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIID 337 S +L+WREF+ P G P +I W+K+ L W +G TGFP ID Sbjct: 285 SLYGQLLWREFFYTAATNNPRFDKMEGNPIC---VQIPWDKNPEALAKWAEGRTGFPWID 341 Query: 338 AAMRQLNTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAA 396 A M QL GW+H+ R A FL + DL + W G + F LLD D + N G W W Sbjct: 342 AIMTQLRQEGWIHHLARHAVACFLTRGDLWISWEEGMKVFEELLLDADWSINAGSWMW-L 400 Query: 397 STGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSW------LDKN 450 S + +F + P G+R DP G +IR +LP L P +YI+ P + + K Sbjct: 401 SCSSFFQQFFHCYCPVGFGRRTDPNGDYIRRYLPVLRGFPAKYIYDPWNAPEGIQKVAKC 460 Query: 451 DLSLNYPLPIVDHKKA 466 + +NYP P+V+H +A Sbjct: 461 LIGVNYPKPMVNHAEA 476 >gi|332993096|gb|AEF03151.1| deoxyribodipyrimidine photolyase [Alteromonas sp. SN2] Length = 437 Score = 132 bits (331), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 129/447 (28%), Positives = 197/447 (44%), Gaps = 36/447 (8%) Query: 1 MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQW---RQHGISARQ 57 M+ TT + L W R+DLR D AL + C D + I + W +GI Sbjct: 8 MRDTTRPTRGLFWFRHDLRFHDQVALSSLCQQVDELTLLYII--DDSWFVPNSYGIQPVG 65 Query: 58 SHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEV 117 H + L+ ++L++K + + + E L S T NE Sbjct: 66 EH-RFNFLIDTIEALNEKASTLGHSILTLRGQTPELLVSLLSSNAFTHFGVTEHGGYNE- 123 Query: 118 RRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQ-----A 172 RR+ R + + + S L + + M V+TPF++ I++ ++ A Sbjct: 124 RREVEAVSRFFPNIEIVTGESSSLFNQDDLPFNLEVMPDVFTPFKRK-IESAIKPREPMA 182 Query: 173 DLRSLP---VPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKE--KV 227 L +LP P I T + P P + F GE L L + E Sbjct: 183 TLTALPRSYTPDIDAECQYTLNRRP-----PRNQAEGTFVGGEDAVLSHLNSYLFEWKVA 237 Query: 228 YYYVEQRD-IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELI 286 Y E R+ + + +++LSP+L+ G LS R +K+ + ++K S + + EL+ Sbjct: 238 ASYKETRNALDNWRDSTKLSPWLATGALSARYVIQEVKK-YEQNVVKNDSTYWIYF-ELL 295 Query: 287 WREFYRHLMAFYPSVCMG----KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQ 342 WRE++ L + S K +P T + D + W G TG+PI+DA MRQ Sbjct: 296 WREYFYWLQQKFGSKWFQLEGIKSKLPNT-----SHDPQVFVGWCNGQTGYPIVDACMRQ 350 Query: 343 LNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDS 402 L + G++ NR R + AS LV +L DWR G +F SQLLD D+ASN G W + A G D Sbjct: 351 LASTGYLSNRGRQLVASCLVNELRQDWRYGAAWFESQLLDYDVASNWGNWLYLAGVGTDP 410 Query: 403 VPYFRIFNPTIQGKRFDPQGTFIRHWL 429 R FN Q + +DP+G F WL Sbjct: 411 REN-RQFNLQKQTEIYDPKGEFCAKWL 436 >gi|291290511|dbj|BAI82611.1| cryptochrome 1 [Xenopus (Silurana) tropicalis] Length = 605 Score = 132 bits (331), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 130/487 (26%), Positives = 200/487 (41%), Gaps = 51/487 (10%) Query: 13 WLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ--- 69 W R LR+ DN AL +D + V+I P + + F+ L + Sbjct: 1 WFRKGLRLHDNPALRECIQGADT-IRCVYILDPWFAGSSNVGINRWRFLLQCLEDLDANL 59 Query: 70 KSLSQKGIVFQYHQCSNFDDSI-EWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128 + L+ + V + F EW ++TKL E RD ++K Sbjct: 60 RKLNSRLFVIRGQPADVFPRLFKEW--------KITKLSIEYDSEPFGKERDAAIKKLAS 111 Query: 129 HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188 + S L L+ +++ P Q L+ + + L +P +T V Sbjct: 112 EAGVEVIVRISHTL---YDLDKIIELNGGQPPLTYKRFQTLI-SKMEPLEIPVETITAEV 167 Query: 189 -----TPS--------NIPRFFDYPFQA---IDPMFPIGEQNALHILRKFCKEKVYYYVE 232 TP +P + F ++P GE AL L + + K + Sbjct: 168 MEKCTTPVLDDHDEKYGVPSLEELGFDTEGLPSAVWPGGETEALTRLERHLERKAWVANF 227 Query: 233 QRDI----PAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWR 288 +R + T+ LSPYL G LS R + +L + + + K S S +L+WR Sbjct: 228 ERPRMNANSLLASTTGLSPYLRFGCLSCRLFYFKLTDLYKKVK-KNSSPPLSLYGQLLWR 286 Query: 289 EFYRHLMAFYPSV--CMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTI 346 EF+ P G P +I W+++ L W +G TGFP IDA M QL Sbjct: 287 EFFYTAATNNPRFDKMEGNPIC---VQIPWDRNPEALAKWAEGRTGFPWIDAIMTQLRQE 343 Query: 347 GWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPY 405 GW+H+ R A FL + DL + W G + F LLD D + N G W W S + + Sbjct: 344 GWIHHLARHAVACFLTRGDLWISWEEGMKVFEELLLDADWSVNAGSWMW-LSCSSFFQQF 402 Query: 406 FRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSW------LDKNDLSLNYPLP 459 F + P G+R DP G +IR +LP L P +YI+ P + + K + +NYP P Sbjct: 403 FHCYCPVGFGRRTDPNGDYIRRYLPILKGFPPKYIYDPWNAPETVQKVAKCIIGVNYPKP 462 Query: 460 IVDHKKA 466 +V+H +A Sbjct: 463 MVNHAEA 469 >gi|315123107|ref|YP_004065113.1| Deoxyribodipyrimidine photolyase [Pseudoalteromonas sp. SM9913] gi|315016867|gb|ADT70204.1| Deoxyribodipyrimidine photolyase [Pseudoalteromonas sp. SM9913] Length = 436 Score = 132 bits (331), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 112/433 (25%), Positives = 191/433 (44%), Gaps = 37/433 (8%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATP-----EQWRQHGISARQSHFIYASL 65 L WL+NDLRI DN L ++ VF+ P ++Q + F+ SL Sbjct: 6 LYWLQNDLRIDDNPIL-NDLSQQQCELDIVFVINPAWFKSNNYQQKPYGVHKQRFLMQSL 64 Query: 66 LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125 ++Q+S+ G + D + L + + ++ Y+ Q + E R+ L+ Sbjct: 65 YELQESVLGLGQTLHILE----GDPVRVLTQRINELGIDEVVYSEQIGVYEQRQITALKS 120 Query: 126 RLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185 + V+ KS L + + +TPFRK + + L S+P A RL Sbjct: 121 KCA-TVVFKSVMQDTLYQQQQLPFELADLPTGFTPFRKKIEATGI--SLSSVPFSAKRLP 177 Query: 186 GPVTPSNIPRFFDYPFQAIDPMFPIGEQNAL-HILRKFCKE-KVYYYVEQRDIPAIQGTS 243 P+ + P +P+ G + L H L+ F Y + + ++ ++ Sbjct: 178 PPIILCAKQPISEPP--TGNPLLQGGHKAGLAHCLQYFSSALPSSYKITRNELGGFDNST 235 Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLN-ELIWREFYR-------HLM 295 + S +L+ G +S +Q + + ++ + W+ EL+WRE+++ H + Sbjct: 236 KFSSWLAFGCISAKQIFCAVDAYEAQ---HGENESTYWIKFELLWREYFKWHAINVKHQL 292 Query: 296 AFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRM 355 + P ++ + W QG T FP+++A M++LN G++ NR R Sbjct: 293 FTFKGKKQSSPLTTFS--------PNRFAKWCQGSTPFPLVNAIMKELNATGFITNRSRQ 344 Query: 356 ITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQG 415 I AS LV +L +DWR G YF QL+D D+A+N G WQ+ A G D R FN Q Sbjct: 345 IAASCLVNELQLDWRYGAAYFEQQLIDYDVAANWGNWQYIAGVGVDPRG-GRHFNLAKQT 403 Query: 416 KRFDPQGTFIRHW 428 +++DP G +I W Sbjct: 404 QQYDPHGEYIAKW 416 >gi|149742994|ref|XP_001499263.1| PREDICTED: cryptochrome 1 [Equus caballus] Length = 587 Score = 132 bits (331), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 136/496 (27%), Positives = 203/496 (40%), Gaps = 56/496 (11%) Query: 7 MSVHLV-WLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASL 65 M V+ V W R LR+ DN AL +D + V+I P + + F+ L Sbjct: 1 MGVNAVHWFRKGLRLHDNPALKECIQGADT-IRCVYILDPWFAGSSNVGINRWRFLLQCL 59 Query: 66 LQVQ---KSLSQKGIVFQYHQCSNFDDSI-EWLDSYCLQQRVTKLFYNRQYEINEVRRDK 121 + + L+ + V + F EW +TKL E RD Sbjct: 60 EDLDANLRKLNSRLFVIRGQPADVFPRLFKEW--------NITKLSIEYDSEPFGKERDA 111 Query: 122 LLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPA 181 ++K + S L L+ +++ P Q L+ + + L +P Sbjct: 112 AIKKLATEAGVEVIVRISHTL---YDLDKIIELNGGQPPLTYKRFQTLI-SKMEPLEIPV 167 Query: 182 IRLTGPV-----TP--------SNIPRFFDYPFQA---IDPMFPIGEQNALHILRKFCKE 225 +T V TP +P + F ++P GE AL L + + Sbjct: 168 ETITSEVIEKCTTPLSDDHDEKYGVPSLEELGFDTDGLPSAVWPGGETEALTRLERHLER 227 Query: 226 KVYYYVEQRDIPAIQGTS------QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAF 279 K + V + P + S LSPYL G LS R + RL + + + K S Sbjct: 228 KAW--VANFERPRMNANSLLASPAGLSPYLRFGCLSCRLFYFRLTDLYRKVK-KNSSPPL 284 Query: 280 SWLNELIWREFYRHLMAFYPSV--CMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIID 337 S +L+WREF+ P G P +I W+K+ L W +G TGFP ID Sbjct: 285 SLYGQLLWREFFYTAATNNPRFDKMEGNPI---CVQIPWDKNPEALAKWAEGRTGFPWID 341 Query: 338 AAMRQLNTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAA 396 A M QL GW+H+ R A FL + DL + W G + F LLD D + N G W W Sbjct: 342 AIMTQLRQEGWIHHLARHAVACFLTRGDLWISWEEGMKVFEELLLDADWSINAGSWMW-L 400 Query: 397 STGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSW------LDKN 450 S + +F + P G+R DP G +IR +LP L P +YI+ P + + K Sbjct: 401 SCSSFFQQFFHCYCPVGFGRRTDPNGDYIRRYLPVLRGFPAKYIYDPWNAPEGIQKVAKC 460 Query: 451 DLSLNYPLPIVDHKKA 466 + +NYP P+V+H +A Sbjct: 461 LIGVNYPKPMVNHAEA 476 >gi|307611921|ref|NP_001182627.1| cryptochrome 2 [Bombyx mori] gi|306416110|gb|ADM86933.1| cryptochrome 2 [Bombyx mori] gi|306416114|gb|ADM86935.1| cryptochrome 2 [Bombyx mori] Length = 730 Score = 132 bits (331), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 144/509 (28%), Positives = 208/509 (40%), Gaps = 65/509 (12%) Query: 8 SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67 +VH W R LRI DN AL ++ VFI P + + F+ L Sbjct: 35 TVH--WFRKGLRIHDNPALREGIIDA-VTFRCVFIIDPWFASSSNVGINKWRFLLQCLED 91 Query: 68 VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127 + KSL + + D L + T L + E RD Sbjct: 92 LDKSLKKLNSRLFVVRGQPADA----LPKLFREWGTTALTFEEDPEPYGRVRD------- 140 Query: 128 QHRVICKSFDDSVLLPPGSILNHAL-QMYKVY--TPFRKALIQNLVQADLRSLPVPAIR- 183 H +I K + + + S ++H L ++ K+ + L + QA + S+P P Sbjct: 141 -HNIISKCREVGITV--TSRVSHTLYKLDKIIERNGGKAPLTYHQFQALIASMPPPPPAE 197 Query: 184 -------LTGPVTPS--------NIPRFFDYPFQAIDPMFPI---GEQNALHILRKFCKE 225 L G TP +P + F+ PI GE AL L + + Sbjct: 198 VTITPQMLNGATTPITDNHDDRFGVPTLEELGFETEGLKPPIWIGGESEALARLERHLER 257 Query: 226 K--VYYYVEQRDIPAIQGTSQ--LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSW 281 K V + + P SQ LSPYL G LS R + +L E + +K S Sbjct: 258 KAWVASFGRPKMTPQSLLASQTGLSPYLRFGCLSTRLFYYQLTELYK--RVKRVRPPLSL 315 Query: 282 LNELIWREFYRHLMAFYPSV--CMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAA 339 +++WREF+ P+ G P +I W K+ L W G TG+P IDA Sbjct: 316 HGQILWREFFYCAATRNPNFDRMEGNPIC---VQIPWEKNQDALAKWANGQTGYPWIDAI 372 Query: 340 MRQLNTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAAST 398 M QL GW+H+ R A FL + DL + W G + F LLD D + N G W W S Sbjct: 373 MIQLREEGWIHHLSRHAVACFLTRGDLWISWEEGMKVFDELLLDADWSVNAGMWMW-FSC 431 Query: 399 GNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKN-------- 450 + +F + P G++ DP G FIR ++P L N+PT+YIH P W+ Sbjct: 432 SSFFQQFFHCYCPVRFGRKTDPNGDFIRKYIPALKNMPTRYIHEP--WMAPESVQAAAQC 489 Query: 451 DLSLNYPLPIVDHKKACH---HTLNQYYA 476 + +YP+P+VDH KA + Q YA Sbjct: 490 SIGRDYPMPMVDHTKASQINIERIKQVYA 518 >gi|283806650|ref|NP_001164572.1| chryptochrome 2-1 [Acyrthosiphon pisum] gi|283476383|emb|CAY26039.1| chryptochrome 2-1 [Acyrthosiphon pisum] Length = 512 Score = 131 bits (330), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 135/507 (26%), Positives = 208/507 (41%), Gaps = 55/507 (10%) Query: 8 SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67 +VH W R LRI DN +L N+ +FI P + + F+ L Sbjct: 6 TVH--WFRKGLRIHDNPSLREGLINAKT-FRCIFILDPWFAGASNVGINKWRFLLQCLSD 62 Query: 68 VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127 + SL + + E L Q T + E RD+ + Sbjct: 63 LDNSLKKLNSRLFVIK----GQPAEALPKLFRQWGTTNFTFEEDPEPFGRVRDQNI---- 114 Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKV---YTPFRKALIQNLVQA-DLRSLPVPAIR 183 +V+C SV+ L ++ V P L QN+++ D VP+I Sbjct: 115 --KVMCSELGISVITRCSHTLYQLDKIINVNGGKAPLTYHLFQNILECIDPPERAVPSID 172 Query: 184 ---LTGPVTPS--------NIPRFFDYPFQAIDPM----FPIGEQNALHILRKFCKEKVY 228 L TP+ +P + F+ I+ + + GE AL L+ + K + Sbjct: 173 KEFLGNAFTPTKYDHDKIFGVPTVEELGFEEINNIARHVWVGGETEALIRLQCHLERKAF 232 Query: 229 Y--YVEQRDIPA--IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNE 284 + + + P + + L+PYL G LS R ++ L E + I+ S + Sbjct: 233 IASFGKPKMTPQSLLASPTGLAPYLKFGCLSTRLYFSELNELYKK--IRKSQPPLSLHGQ 290 Query: 285 LIWREFYRHLMAFYPSV--CMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQ 342 L+WR+F+ P+ +G P +I W+K+ L W G TG+P IDA M Q Sbjct: 291 LLWRDFFYCASTNNPNFDRMVGNPI---CVQIPWDKNPRALSKWANGQTGYPWIDAIMIQ 347 Query: 343 LNTIGWMHNRLRMITASFLV-KDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGND 401 L GW+H R A FL DL + W G + F LLD D + N G W W S + Sbjct: 348 LRQEGWIHCIARHAVACFLTWGDLWLSWEEGMKVFDELLLDADWSVNAGYWMW-YSCSSF 406 Query: 402 SVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND--------LS 453 + + P G++ DP G +IR ++P LNN+P +YIH P WL + Sbjct: 407 YKEFIHCYCPVRFGRKVDPNGDYIRRYIPALNNMPNKYIHEP--WLAPESIQITANCIIG 464 Query: 454 LNYPLPIVDHKKACHHTLNQYYAAKKQ 480 ++YPLPIV+H A + + A +Q Sbjct: 465 IDYPLPIVNHINASKINIERMKLAYQQ 491 >gi|254445301|ref|ZP_05058777.1| deoxyribodipyrimidine photolyase family [Verrucomicrobiae bacterium DG1235] gi|198259609|gb|EDY83917.1| deoxyribodipyrimidine photolyase family [Verrucomicrobiae bacterium DG1235] Length = 522 Score = 131 bits (330), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 122/481 (25%), Positives = 210/481 (43%), Gaps = 45/481 (9%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 +VW + DLR+ D++ L+ A + V+ ++I P + I+ FI SL + Sbjct: 8 IVWFKRDLRVHDHRPLFEA--SRLGPVLPLYIVEPILLDSNDIAPCHGSFINDSLRDLDT 65 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQY-EINEVRRDKLLEKRLQH 129 SL + G H+ + + E S +LF + + RRD+ + + Sbjct: 66 SLRKLGTALVVHEGT----ATEVFQSLLKSIGPFRLFSHEETGNALTFRRDRDVAAWTKT 121 Query: 130 RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189 + I + P ++ + + + + A P+ + Sbjct: 122 QRI-----QWIEYPQNGVIRRLTTRDGWADRWHERMKVEQISAPKHIAPI-----LKSQS 171 Query: 190 PSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS--QLSP 247 P++ P+ P A + GE A L F +E+ Y ++ P TS +LSP Sbjct: 172 PTDFPKVLRTP-PANPSLQAGGETPANKCLASFLQERGRAYHKEMSSPLTADTSCSRLSP 230 Query: 248 YLSIGVLSPR----QCWNR---LKEEFVDLLIKPKS--------GAFSWLNELIWREFYR 292 YL+ G +S + W + L+E+ + S+L+ W + Sbjct: 231 YLAYGCISMKTVVQSTWTKAAHLREQKAAAKAEKTPYHERYSLMALRSFLSRCHWHCHFI 290 Query: 293 HLMAFYPSVCMGKPFIPWTEKIEWNKDSH-LLQAWKQGYTGFPIIDAAMRQLNTIGWMHN 351 + PS+ KPF P E + + +H L+AW+ G+TG+P +DA +R LNT W++ Sbjct: 291 QKLEDQPSIEF-KPFNPALEGLRRLEPNHAFLEAWQTGHTGYPFVDACIRYLNTHKWINF 349 Query: 352 RLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNP 411 R+R + SF DL +DWR +++ LD + + Q +G + RI+NP Sbjct: 350 RMRAMLVSFAAYDLWIDWRHFKDHLARAFLDYEPGIHYS--QIQMQSGTTGINTLRIYNP 407 Query: 412 TIQGKRFDPQGTFIRHWLPELNNVPTQYIHAP--HSWLDKNDLSL----NYPLPIVDHKK 465 QG+ DP+G FI+ W+PEL +P +++H P S + LS +YPLPI+DH + Sbjct: 408 IKQGRDQDPRGIFIKRWVPELAAIPAEHVHEPWTLSQTQQKKLSCLLGKHYPLPIIDHAE 467 Query: 466 A 466 A Sbjct: 468 A 468 >gi|297692835|ref|XP_002823736.1| PREDICTED: cryptochrome-1-like [Pongo abelii] Length = 586 Score = 131 bits (330), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 136/496 (27%), Positives = 203/496 (40%), Gaps = 56/496 (11%) Query: 7 MSVHLV-WLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASL 65 M V+ V W R LR+ DN AL +D + V+I P + + F+ L Sbjct: 1 MGVNAVHWFRKGLRLHDNPALKECIQGADT-IRCVYILDPWFAGSSNVGINRWRFLLQCL 59 Query: 66 LQVQKSL---SQKGIVFQYHQCSNFDDSI-EWLDSYCLQQRVTKLFYNRQYEINEVRRDK 121 + SL + + V + F EW +TKL E RD Sbjct: 60 EDLDASLRKLNSRLFVIRGQPADVFPRLFKEW--------NITKLSIEYDSEPFGKERDA 111 Query: 122 LLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPA 181 ++K + S L L+ +++ P Q L+ + + L +P Sbjct: 112 AIKKLATEAGVEVIVRISHTL---YDLDKIIELNGGQPPLTYKRFQTLI-SKMEPLEIPV 167 Query: 182 IRLTGPV-----TP--------SNIPRFFDYPFQA---IDPMFPIGEQNALHILRKFCKE 225 +T V TP +P + F ++P GE AL L + + Sbjct: 168 ETITSEVIEKCTTPLSDDHDEKYGVPSLEELGFDTDGLSSAVWPGGETEALTRLERHLER 227 Query: 226 KVYYYVEQRDIPAIQGTS------QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAF 279 K + V + P + S LSPYL G LS R + +L + + + K S Sbjct: 228 KAW--VANFERPRMNANSLLASPTGLSPYLRFGCLSCRLFYFKLTDLYKKVK-KNSSPPL 284 Query: 280 SWLNELIWREFYRHLMAFYPSV--CMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIID 337 S +L+WREF+ P G P +I W+K+ L W +G TGFP ID Sbjct: 285 SLYGQLLWREFFYTAATNNPRFDKMEGNPI---CVQIPWDKNPEALAKWAEGRTGFPWID 341 Query: 338 AAMRQLNTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAA 396 A M QL GW+H+ R A FL + DL + W G + F LLD D + N G W W Sbjct: 342 AIMTQLRQEGWIHHLARHAVACFLTRGDLWISWEEGMKVFEELLLDADWSINAGSWMW-L 400 Query: 397 STGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSW------LDKN 450 S + +F + P G+R DP G +IR +LP L P +YI+ P + + K Sbjct: 401 SCSSFFQQFFHCYCPVGFGRRTDPNGDYIRRYLPVLRGFPAKYIYDPWNAPEGIQKVAKC 460 Query: 451 DLSLNYPLPIVDHKKA 466 + +NYP P+V+H +A Sbjct: 461 LIGVNYPKPMVNHAEA 476 >gi|296487421|gb|DAA29534.1| cryptochrome 1 (photolyase-like) [Bos taurus] Length = 543 Score = 131 bits (330), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 135/496 (27%), Positives = 203/496 (40%), Gaps = 56/496 (11%) Query: 7 MSVHLV-WLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASL 65 M V+ V W R LR+ DN AL +D + V+I P + + F+ L Sbjct: 1 MGVNAVHWFRKGLRLHDNPALKECIQGADT-IRCVYILDPWFAGSSNVGINRWRFLLQCL 59 Query: 66 LQVQ---KSLSQKGIVFQYHQCSNFDDSI-EWLDSYCLQQRVTKLFYNRQYEINEVRRDK 121 + + L+ + V + F EW +TKL E RD Sbjct: 60 EDLDANLRKLNSRLFVIRGQPADVFPRLFKEW--------NITKLSIEYDSEPFGKERDA 111 Query: 122 LLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPA 181 ++K + S L L+ +++ P Q L+ + + L +P Sbjct: 112 AIKKLATEAGVEVIVRISHTL---YDLDKIIELNGGQPPLTYKRFQTLI-SKMEPLEIPV 167 Query: 182 IRLTGPV-----TP--------SNIPRFFDYPFQA---IDPMFPIGEQNALHILRKFCKE 225 +T V TP +P + F ++P GE AL L + + Sbjct: 168 ETITSEVIEKCTTPLSDDHDEKYGVPSLEELGFDTDGLPSAVWPGGETEALTRLERHLER 227 Query: 226 KVYYYVEQRDIPAIQGTS------QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAF 279 K + V + P + S LSPYL G LS R + +L + + + K S Sbjct: 228 KAW--VANFERPRMNANSLLASPTGLSPYLRFGCLSCRLFYFKLTDLYKKVK-KNSSPPL 284 Query: 280 SWLNELIWREFYRHLMAFYPSV--CMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIID 337 S +L+WREF+ P G P +I W+K+ L W +G TGFP ID Sbjct: 285 SLYGQLLWREFFYTAATNNPRFDKMEGNPI---CVQIPWDKNPEALAKWAEGRTGFPWID 341 Query: 338 AAMRQLNTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAA 396 A M QL GW+H+ R A FL + DL + W G + F LLD D + N G W W Sbjct: 342 AIMTQLRQEGWIHHLARHAVACFLTRGDLWISWEEGMKVFEELLLDADWSINAGSWMW-L 400 Query: 397 STGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSW------LDKN 450 S + +F + P G+R DP G +IR +LP L P +YI+ P + + K Sbjct: 401 SCSSFFQQFFHCYCPVGFGRRTDPNGDYIRRYLPVLRGFPAKYIYDPWNAPEGIQKVAKC 460 Query: 451 DLSLNYPLPIVDHKKA 466 + +NYP P+V+H +A Sbjct: 461 LIGVNYPKPMVNHAEA 476 >gi|195451205|ref|XP_002072813.1| GK13802 [Drosophila willistoni] gi|194168898|gb|EDW83799.1| GK13802 [Drosophila willistoni] Length = 543 Score = 131 bits (330), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 130/515 (25%), Positives = 226/515 (43%), Gaps = 72/515 (13%) Query: 3 ATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKV--IAVFIATPEQWRQHGISARQSHF 60 A +++W R+ LR+ DN AL +A + D + I +FI E + + F Sbjct: 2 ANVTCGANVIWFRHGLRLHDNPALLSALADKDQGIALIPIFIFDGESAGTKDVGYNRMRF 61 Query: 61 IYASLL----QVQKSLSQKGI--VFQYHQCSNFDDSIEWLD--SYCLQQRVTKLFYNRQY 112 + SL +VQ++ +G +FQ F + L C +Q ++ R Sbjct: 62 LLDSLQDLDGKVQQATEGRGRLHIFQGQPKEIFRRLHQQLQLKKICFEQDCEPIWSQRDA 121 Query: 113 EINEVRRDKLLEKRLQHRVICKSFDD--SVLLPPGSILNHALQMYK-----VYTPFRKAL 165 + + ++ +E ++ + D +V+ G I QM+ + P R Sbjct: 122 SVKSLCQELGIEWV---EMVSHTLWDPHTVIETNGGIPPLTYQMFLHTVEIIGLPPRPTN 178 Query: 166 IQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPI----GEQNALHILRK 221 N + R + P +F+ + + I GE AL +L++ Sbjct: 179 DPNWNNVGFVEISQELQRELKYLQHFPTPEYFNIYCDNMGYLAKINWRGGETEALLLLQE 238 Query: 222 FCKEKVY-----YYVEQRDIPAIQGTSQ-LSPYLSIGVLSPRQCWNRLKEEFVDLLIKP- 274 K + YY+ + +P I T + +SP+L G LS R+ + + + F ++ ++ Sbjct: 239 RLKVEQSAFERGYYLPNQALPNILDTPKSMSPHLRFGCLSVRRFYWNVHDLFKNVQLQAC 298 Query: 275 -----KSGAFSWLNELIWREFYRHLMAFYPS---------VCMGKPFIPWTEKIEWNKDS 320 +G +LIWRE++ + M+ S +C+ IPW++ E Sbjct: 299 VRGVQMTGGSHITGQLIWREYF-YTMSVNNSNYDRMDGNEICLN---IPWSKPHE----- 349 Query: 321 HLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQ 379 L+ W+ G TGFP+ID AMRQL GW+H+ LR A+FL + L W G ++F+ Sbjct: 350 EKLERWRLGQTGFPLIDGAMRQLLAEGWLHHTLRNTVATFLTRGGLWQSWEHGVQHFLKY 409 Query: 380 LLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTI------QGKRFDPQGTFIRHWLPELN 433 LLD D + G W W +S+ + R+ + ++ KR DP G +I+ ++PEL Sbjct: 410 LLDADWSVCAGNWMWVSSSA-----FERLLDSSLVTCSQAMAKRLDPDGLYIKQYVPELR 464 Query: 434 NVPTQYIHAPHSWLDKND------LSLNYPLPIVD 462 NVP +YIH P ++ + ++YP PI+D Sbjct: 465 NVPKEYIHEPWRMSAEDQERYECLIGVHYPEPIID 499 >gi|120553261|ref|YP_957612.1| DNA photolyase FAD-binding subunit [Marinobacter aquaeolei VT8] gi|120323110|gb|ABM17425.1| deoxyribodipyrimidine photo-lyase (single-stranded DNA-specific) [Marinobacter aquaeolei VT8] Length = 440 Score = 131 bits (330), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 122/446 (27%), Positives = 203/446 (45%), Gaps = 52/446 (11%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATP-----EQWRQHGISARQSHFIYASL 65 L W DLR+ DN AL AA + ++ VF+ P ++++ + + F++ SL Sbjct: 4 LYWFTRDLRLHDNPALLAAARSD--MLLCVFVVDPRWFTGDRFQCRALGDHRWRFLWQSL 61 Query: 66 LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125 + +++SL G + H + + L + V +L +R E + + L+ Sbjct: 62 MALERSLRPMGQ--RLHIAWGEPEVV--LPELAREHGVQRLIRSRLPGTEEAAQWQALKT 117 Query: 126 RLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQAD-------LRSLP 178 RL V + F+ + G + ++ ++ FRK ++ Q D + +LP Sbjct: 118 RLPE-VTFQQFETLGMFAEGQLPMELAELPDTFSQFRKQ-VEKAEQPDHTLRIRTVSALP 175 Query: 179 VPAI-----RLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFC--KEKVYYYV 231 P R P P I R PF GE+ L L+ F + ++ Y Sbjct: 176 PPPGFPEDNRGQCPPIPEPIHR---SPFTG-------GEEAGLAQLQAFVFGQHRIANYK 225 Query: 232 EQRDIPAIQGTS-QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREF 290 E R+ G+S + SP+L+ G LS R+ + E++ + S + W EL+WRE+ Sbjct: 226 ETRNALDDWGSSSKFSPWLANGCLSAREVVAAI-EQYERQHTRNDSTYWLWF-ELLWREY 283 Query: 291 Y-----RHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNT 345 + +H + + + P T H +AW +G T +PI++AAM QL Sbjct: 284 FYWYALKHGGRLFSRDGVQRKRRPVTFY------GHRFKAWCEGNTQYPIVNAAMNQLRE 337 Query: 346 IGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPY 405 G++ NR R + AS L+ +L +DWR G +F QL+D D+ASN G WQ+ A G D Sbjct: 338 TGYISNRARQLVASCLINELELDWRYGAAWFEQQLVDYDVASNYGNWQYLAGVGADPRG- 396 Query: 406 FRIFNPTIQGKRFDPQGTFIRHWLPE 431 R FN Q +++DP+ F+ W E Sbjct: 397 LRQFNLDKQAQQYDPEEAFVHRWQGE 422 >gi|302564841|ref|NP_001181088.1| cryptochrome-1 [Macaca mulatta] Length = 586 Score = 131 bits (330), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 135/496 (27%), Positives = 203/496 (40%), Gaps = 56/496 (11%) Query: 7 MSVHLV-WLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASL 65 M V+ V W R LR+ DN AL +D + V+I P + + F+ L Sbjct: 1 MGVNAVHWFRKGLRLHDNPALKECIQGADT-IRCVYILDPWFAGSSNVGINRWRFLLQCL 59 Query: 66 LQVQ---KSLSQKGIVFQYHQCSNFDDSI-EWLDSYCLQQRVTKLFYNRQYEINEVRRDK 121 + + L+ + V + F EW +TKL E RD Sbjct: 60 EDLDANLRKLNSRLFVIRGQPADVFPRLFKEW--------NITKLSIEYDSEPFGKERDA 111 Query: 122 LLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPA 181 ++K + S L L+ +++ P Q L+ + + L +P Sbjct: 112 AIKKLATEAGVEVIVRISHTL---YDLDKIIELNGGQPPLTYKRFQTLI-SKMEPLEIPV 167 Query: 182 IRLTGPV-----TP--------SNIPRFFDYPFQA---IDPMFPIGEQNALHILRKFCKE 225 +T V TP +P + F ++P GE AL L + + Sbjct: 168 ETITSEVIEKCTTPLSDDHDEKYGVPSLEELGFDTDGLSSAVWPGGETEALTRLERHLER 227 Query: 226 KVYYYVEQRDIPAIQGTS------QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAF 279 K + V + P + S LSPYL G LS R + +L + + + K S Sbjct: 228 KAW--VANFERPRMNANSLLASPTGLSPYLRFGCLSCRLFYFKLTDLYKKVK-KNSSPPL 284 Query: 280 SWLNELIWREFYRHLMAFYPSV--CMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIID 337 S +L+WREF+ P G P +I W+K+ L W +G TGFP ID Sbjct: 285 SLYGQLLWREFFYTAATNNPRFDKMEGNPIC---VQIPWDKNPEALAKWAEGRTGFPWID 341 Query: 338 AAMRQLNTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAA 396 A M QL GW+H+ R A FL + DL + W G + F LLD D + N G W W Sbjct: 342 AIMTQLRQEGWIHHLARHAVACFLTRGDLWISWEEGMKVFEELLLDADWSINAGSWMW-L 400 Query: 397 STGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSW------LDKN 450 S + +F + P G+R DP G +IR +LP L P +YI+ P + + K Sbjct: 401 SCSSFFQQFFHCYCPVGFGRRTDPNGDYIRRYLPVLRGFPAKYIYDPWNAPEGIQKVAKC 460 Query: 451 DLSLNYPLPIVDHKKA 466 + +NYP P+V+H +A Sbjct: 461 LIGINYPKPMVNHAEA 476 >gi|110962429|gb|ABH03083.1| cryptochrome 1b [Sylvia borin] Length = 587 Score = 131 bits (329), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 135/495 (27%), Positives = 203/495 (41%), Gaps = 54/495 (10%) Query: 7 MSVHLV-WLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASL 65 M V+ V W R LR+ DN AL +D V V+I P + + F+ L Sbjct: 1 MGVNAVHWFRKGLRLHDNPALRECIQGADT-VRCVYILDPWFAGSSNVGINRWRFLLQCL 59 Query: 66 LQVQ---KSLSQKGIVFQYHQCSNFDDSI-EWLDSYCLQQRVTKLFYNRQYEINEVRRDK 121 + + L+ + V + F EW + KL E RD Sbjct: 60 EDLDANLRKLNSRLFVIRGQPADVFPRLFKEW--------NIAKLSIEYDSEPFGKERDA 111 Query: 122 LLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLV-QADLRSLPVP 180 ++K + S L L+ +++ P Q L+ + + +PV Sbjct: 112 AIKKLASEAGVEVIVRISHTL---YDLDKIIELNGGQPPLTYKRFQTLISRMEPLEMPVE 168 Query: 181 AI------RLTGPVTPS-----NIPRFFDYPFQA---IDPMFPIGEQNALHILRKFCKEK 226 I + T PV+ +P + F ++P GE AL L + + K Sbjct: 169 TITPEVMKKCTTPVSDDHDEKYGVPSLEELGFDTDGLPSAVWPGGETEALTRLERHLERK 228 Query: 227 VYYYVEQRDIPAIQGTS------QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFS 280 + V + P + S LSPYL G LS R + +L + + + K S S Sbjct: 229 AW--VANFERPRMNANSLLASPTGLSPYLRFGCLSCRLFYFKLTDLYKKVK-KNSSPPLS 285 Query: 281 WLNELIWREFYRHLMAFYPSV--CMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDA 338 +L+WREF+ P G P +I W+K+ L W +G TGFP IDA Sbjct: 286 LYGQLLWREFFYTAATNNPRFDKMEGNPI---CVQIPWDKNPEALAKWAEGRTGFPWIDA 342 Query: 339 AMRQLNTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAAS 397 M QL GW+H+ R A FL + DL + W G + F LLD D + N G W W S Sbjct: 343 IMTQLRQEGWIHHLARHAVACFLTRGDLWISWEEGMKVFEELLLDADWSVNAGSWMW-LS 401 Query: 398 TGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLD------KND 451 + +F + P G+R DP G +IR +LP L P +YI+ P + + K Sbjct: 402 CSSFFQQFFHCYCPVGFGRRTDPNGDYIRRYLPVLRGFPAKYIYDPWNAPESIQKAAKCI 461 Query: 452 LSLNYPLPIVDHKKA 466 + +NYP P+V+H +A Sbjct: 462 IGVNYPKPMVNHAEA 476 >gi|71297422|gb|AAH35161.1| CRY2 protein [Homo sapiens] Length = 461 Score = 131 bits (329), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 97/288 (33%), Positives = 136/288 (47%), Gaps = 29/288 (10%) Query: 197 FDYPFQAIDP-MFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS------QLSPYL 249 +P + + P ++ GE AL L K + K + V + P + S LSPYL Sbjct: 85 LGFPTEGLGPAVWQGGETEALARLDKHLERKAW--VANYERPRMNANSLLASPTGLSPYL 142 Query: 250 SIGVLSPRQCWNRLKEEFVDLLIKPKSGA---FSWLNELIWREFYRHLMAFYPSV--CMG 304 G LS R + RL DL K K + S +L+WREF+ P G Sbjct: 143 RFGCLSCRLFYYRL----WDLYKKVKRNSTPPLSLFGQLLWREFFYTAATNNPRFDRMEG 198 Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK- 363 P +I W+++ L W +G TGFP IDA M QL GW+H+ R A FL + Sbjct: 199 NPIC---IQIPWDRNPEALAKWAEGKTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRG 255 Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423 DL V W G F LLD D + N G W W S G +F + P G+R DP G Sbjct: 256 DLWVSWESGVRVFDELLLDADFSVNAGSWMW-LSCGAFFQQFFHCYCPVGFGRRTDPSGD 314 Query: 424 FIRHWLPELNNVPTQYIHAPHSWLD------KNDLSLNYPLPIVDHKK 465 +IR +LP+L P++YI+ P + + K + ++YP PIV+H + Sbjct: 315 YIRRYLPKLKAFPSRYIYEPWNAPESIQKAAKCIIGVDYPRPIVNHAE 362 >gi|147901075|ref|NP_001083936.1| cryptochrome 2 (photolyase-like) [Xenopus laevis] gi|50415857|gb|AAH77381.1| Cry2 protein [Xenopus laevis] Length = 570 Score = 131 bits (329), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 91/282 (32%), Positives = 133/282 (47%), Gaps = 22/282 (7%) Query: 207 MFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS------QLSPYLSIGVLSPRQCW 260 ++P GE AL L + + K + V + P + S LSPYL G LS R + Sbjct: 213 IWPGGETEALARLDRHLERKAW--VANYERPRMSANSLLASPTGLSPYLRFGCLSCRLFY 270 Query: 261 NRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSV--CMGKPFIPWTEKIEWNK 318 RL +E + K S +L+WREF+ P G P +I W+K Sbjct: 271 YRL-QELYQKVKKNSPPPLSLYGQLLWREFFYTAATNNPKFDQMEGNPI---CVQIPWDK 326 Query: 319 DSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFM 377 + L W +G TGFP IDA M QL GW+H+ R A FL + DL W G + F Sbjct: 327 NPKALAKWTEGKTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWNSWECGVKVFD 386 Query: 378 SQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPT 437 LLD D + N G W W + + +F + P G+R DP G +++ +LP L P+ Sbjct: 387 ELLLDADFSVNAGSWMWLSCSAFFQQ-FFHCYCPVGFGRRTDPSGDYVKRYLPVLKAFPS 445 Query: 438 QYIHAPHSWLD------KNDLSLNYPLPIVDHKKACHHTLNQ 473 +YI+ P S + K + ++YP PIV+H +A + + Sbjct: 446 RYIYEPWSAPESVQKEAKCIIGIDYPKPIVNHAEASRMNIER 487 >gi|163846298|ref|YP_001634342.1| deoxyribodipyrimidine photo-lyase [Chloroflexus aurantiacus J-10-fl] gi|222524057|ref|YP_002568527.1| deoxyribodipyrimidine photo-lyase [Chloroflexus sp. Y-400-fl] gi|163667587|gb|ABY33953.1| Deoxyribodipyrimidine photo-lyase [Chloroflexus aurantiacus J-10-fl] gi|222447936|gb|ACM52202.1| Deoxyribodipyrimidine photo-lyase [Chloroflexus sp. Y-400-fl] Length = 510 Score = 131 bits (329), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 95/297 (31%), Positives = 132/297 (44%), Gaps = 25/297 (8%) Query: 188 VTPSNIPRF--FDYPFQAIDPMFPIGEQNALHILRKFC--KEKVYYYVEQRDIPAIQGTS 243 + P IP P + P GE AL L F + + Y+ + A +G S Sbjct: 165 IDPGTIPTADELSLPPDTLSEHQPAGETAALQTLTDFIHRRSQQYHRALASPLTAWEGCS 224 Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCM 303 +LS YL+ G LS R + +L P W+ L E H + Sbjct: 225 RLSAYLAWGALSIRTVVQATRHRISELAFDPSPATRGWVRALNAFESRLHWHCHFIQKLE 284 Query: 304 GKPFIPWTEKI-------EWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMI 356 +P I + E N LL AW G TG+P +DA MR L GW++ R+R + Sbjct: 285 DEPEIEVRNLVRAYDGMREENHRPDLLVAWASGRTGYPFVDACMRALTATGWLNFRMRAM 344 Query: 357 TASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAAST-GNDSVPYFRIFNPTIQG 415 SF+ DL WR + +D + + Q A T GN ++ RI+NP QG Sbjct: 345 LVSFVAYDLWQHWREPALILARRWIDYEPGIHYSQMQMQAGTSGNRTI---RIYNPVKQG 401 Query: 416 KRFDPQGTFIRHWLPELNNVPTQYIHAPHSW-LDKND-------LSLNYPLPIVDHK 464 DP+G FIR W+PEL +VPT YIH P W LD++ + +YP PIVDH+ Sbjct: 402 IDHDPEGIFIRRWVPELAHVPTPYIHTP--WLLDRHGQERAGCRIGRDYPAPIVDHE 456 Score = 40.0 bits (92), Expect = 0.94, Method: Compositional matrix adjust. Identities = 22/70 (31%), Positives = 38/70 (54%), Gaps = 2/70 (2%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M + LVW + DLR+ D+ AL AA + V+ ++I P +AR FI L+ Sbjct: 1 MYIQLVWFKRDLRLHDHPALSAAA--ARGPVLPLYIVEPSLIHAPDFAARHWTFIRGCLV 58 Query: 67 QVQKSLSQKG 76 +++ +L++ G Sbjct: 59 ELRANLARLG 68 >gi|158301399|ref|XP_321104.4| AGAP001958-PA [Anopheles gambiae str. PEST] gi|205696380|sp|Q7PYI7|CRY1_ANOGA RecName: Full=Cryptochrome-1; Short=agCRY1 gi|78191295|gb|ABB29886.1| cryptochrome 1 [Anopheles gambiae] gi|157012451|gb|EAA01270.4| AGAP001958-PA [Anopheles gambiae str. PEST] Length = 545 Score = 131 bits (329), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 131/513 (25%), Positives = 214/513 (41%), Gaps = 83/513 (16%) Query: 10 HLVWLRNDLRITDN----KALYAACHNSDA---KVIAVFIATPEQWRQHGISARQSHFIY 62 +++W R+ LR+ DN +AL + C N + K+ +FI E + + F+ Sbjct: 5 NILWFRHGLRLHDNPSLLEALKSDCVNQSSEAVKLFPIFIFDGESAGTRIVGYNRMKFLL 64 Query: 63 ASLLQVQKSLSQKG---IVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRR 119 SL + + G +VF+ DS+ L + + KL Y + E R Sbjct: 65 ESLADLDRQFRDLGGQLLVFR-------GDSVTVLRRLFEELNIKKLCYEQDCEPIWKER 117 Query: 120 DKLLEKRLQHRVICKSFDD--------------SVLLPPGSILNHALQMYK-----VYTP 160 D + K +C++ D V+ G I QM+ + P Sbjct: 118 DDAVAK------LCRTMDVRCVENVSHTLWNPIEVIQTNGDIPPLTYQMFLHTVNIIGDP 171 Query: 161 FRKALIQNLVQADLRSLPV---PAIRLTGPV-TPSNIPRFFDYPFQAIDPMFPIGEQNAL 216 R N + +P ++L + P + +D + + GE AL Sbjct: 172 PRPVGAPNFEYVEFGRVPALLASELKLCQQMPAPDDFGIHYDGNARIAFQKWIGGETRAL 231 Query: 217 HILRKFCKE-----KVYYYVEQRDIPAIQG-TSQLSPYLSIGVLSPRQCWNRLKEEFVDL 270 L K+ + YY+ + P I G + +S L G LS R + + + F + Sbjct: 232 EALGARLKQEEEAFREGYYLPTQAKPEILGPATSMSAALRFGCLSVRMFYWCVHDLFAKV 291 Query: 271 LIKPK---SGAFSWLNELIWREFYRHLMAFYP--------SVCMGKPFIPWTEKIEWNKD 319 + G +LIWRE++ + P +C+ IPW + + Sbjct: 292 QSNSQFKYPGGHHITGQLIWREYFYTMSVQNPHYGEMERNPICLN---IPW-----YKPE 343 Query: 320 SHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMS 378 L WK+G TGFP+IDAAMRQL GW+H+ LR ITA+FL + L + W G ++F+ Sbjct: 344 DDSLTRWKEGRTGFPMIDAAMRQLLAEGWLHHILRNITATFLTRGGLWLSWEEGLQHFLK 403 Query: 379 QLLDGDLASNNGGWQWAASTGNDS-VPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPT 437 LLD D + G W W +S+ + + + P +R DP+G +++ +LPEL N P Sbjct: 404 YLLDADWSVCAGNWMWVSSSAFERLLDSSKCTCPIALARRLDPKGDYVKRYLPELANYPA 463 Query: 438 QYIHAPHSWLDKND--------LSLNYPLPIVD 462 Q++H P W + + YP P+VD Sbjct: 464 QFVHEP--WKASREQQIEYGCVIGEKYPAPMVD 494 >gi|193211372|ref|NP_001123207.1| cryptochrome-1 [Ovis aries] gi|152940829|gb|ABS44879.1| cryptochrome 1 [Ovis aries] Length = 587 Score = 131 bits (329), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 135/496 (27%), Positives = 203/496 (40%), Gaps = 56/496 (11%) Query: 7 MSVHLV-WLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASL 65 M V+ V W R LR+ DN AL +D + V+I P + + F+ L Sbjct: 1 MGVNAVHWFRKGLRLHDNPALKECIQGADT-IRCVYILDPWFAGSSNVGINRWRFLLQCL 59 Query: 66 LQVQ---KSLSQKGIVFQYHQCSNFDDSI-EWLDSYCLQQRVTKLFYNRQYEINEVRRDK 121 + + L+ + V + F EW +TKL E RD Sbjct: 60 EDLDANLRKLNSRLFVIRGQPADVFPRLFKEW--------NITKLSIEYDSEPFGKERDA 111 Query: 122 LLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPA 181 ++K + S L L+ +++ P Q L+ + + L +P Sbjct: 112 AIKKLATEAGVEVIIRISHTL---YDLDKIIELNGGQPPLTYKRFQTLI-SKMEPLEIPV 167 Query: 182 IRLTGPV-----TP--------SNIPRFFDYPFQA---IDPMFPIGEQNALHILRKFCKE 225 +T V TP +P + F ++P GE AL L + + Sbjct: 168 ETITSEVMEKCTTPLSDDHDEKYGVPSLEELGFDTDGLPSAVWPGGETEALTRLERHLER 227 Query: 226 KVYYYVEQRDIPAIQGTS------QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAF 279 K + V + P + S LSPYL G LS R + +L + + + K S Sbjct: 228 KAW--VANFERPRMNANSLLASPTGLSPYLRFGCLSCRLFYFKLTDLYKKVK-KNSSPPL 284 Query: 280 SWLNELIWREFYRHLMAFYPSV--CMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIID 337 S +L+WREF+ P G P +I W+K+ L W +G TGFP ID Sbjct: 285 SLYGQLLWREFFYTAATNNPRFDKMEGNPIC---VQIPWDKNPEALAKWAEGRTGFPWID 341 Query: 338 AAMRQLNTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAA 396 A M QL GW+H+ R A FL + DL + W G + F LLD D + N G W W Sbjct: 342 AIMTQLRQEGWIHHLARHAVACFLTRGDLWISWEEGMKVFEELLLDADWSINAGSWMW-L 400 Query: 397 STGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSW------LDKN 450 S + +F + P G+R DP G +IR +LP L P +YI+ P + + K Sbjct: 401 SCSSFFQQFFHCYCPVGFGRRTDPNGDYIRRYLPVLRGFPAKYIYDPWNAPEGIQKVAKC 460 Query: 451 DLSLNYPLPIVDHKKA 466 + +NYP P+V+H +A Sbjct: 461 LIGVNYPKPMVNHAEA 476 >gi|86137240|ref|ZP_01055818.1| Deoxyribodipyrimidine photolyase [Roseobacter sp. MED193] gi|85826564|gb|EAQ46761.1| Deoxyribodipyrimidine photolyase [Roseobacter sp. MED193] Length = 502 Score = 131 bits (329), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 126/498 (25%), Positives = 203/498 (40%), Gaps = 64/498 (12%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 + +VW + DLR +D+ AL A V+ +++ P+ W+Q S RQ F+ +L ++ Sbjct: 1 MQVVWFKRDLRCSDHAALTRAAQV--GPVLPLYVVEPDLWQQPDASHRQWCFVAETLAEL 58 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128 + L +G Q S +E L+ Q R++ L+ + E ++ + Sbjct: 59 RDDLKLRGQPLVVRQGS----VVEILEGLMRQGRLSALWSH-----EESGNGWTFQRDCR 109 Query: 129 HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188 C+ I H LQ + V+ + L + P + PV Sbjct: 110 VAAWCRD---------NGIPWHELQNHGVWRRLQSRDGWAKRWDRLMAQPCASAPQLAPV 160 Query: 189 --TPSNIPRFFDYPFQA-IDPMFPIGEQNA-LHILRKFCKEKVYYYVEQRDIPAIQGTS- 243 P +IP D + + P G + A L L F ++ +Y P ++GTS Sbjct: 161 DIVPGSIPTARDLGLGSDVSPGRQSGGRGAGLERLESFLNQRGEHYQRAMSSP-LEGTSA 219 Query: 244 --QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSV 301 +LSPYL+ G +S R+ LL KS WR+ R Sbjct: 220 CSRLSPYLAWGAVSMREVAQANAARQRALLPAEKS----------WRKSLRSFSGRLHWH 269 Query: 302 CMGKPFIPWTEKIEWNK-------------DSHLLQAWKQGYTGFPIIDAAMRQLNTIGW 348 C I +IE+ D+ LQAW++G TG+P +DA MR L + GW Sbjct: 270 CHFIQKIEDEPRIEFENLHRLMDDLRPKTPDAARLQAWEKGETGYPFLDACMRCLRSTGW 329 Query: 349 MHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAA---STGNDSVPY 405 ++ R+R + + L +DWR ++ D G W+ +G + Sbjct: 330 LNFRMRAMLMAVAAYHLWLDWRAPGQHLARMFTD-----YEPGIHWSQVQMQSGTTGINT 384 Query: 406 FRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND---LSLNYPLPIVD 462 RI+NP QG DP G FIR WLPEL +P +++H P W N + +YP I D Sbjct: 385 VRIYNPVKQGFDQDPTGIFIRIWLPELAQIPDRHLHEP--WAADNSAEVIGRHYPERIFD 442 Query: 463 HKKACHHTLNQYYAAKKQ 480 H A + + +++ Sbjct: 443 HMAAAKAAREKIWEVRRR 460 >gi|150026082|ref|YP_001296908.1| deoxyribodipyrimidine photolyase PhrB3 [Flavobacterium psychrophilum JIP02/86] gi|149772623|emb|CAL44106.1| Deoxyribodipyrimidine photolyase PhrB3 [Flavobacterium psychrophilum JIP02/86] Length = 430 Score = 131 bits (329), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 120/447 (26%), Positives = 203/447 (45%), Gaps = 43/447 (9%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAV-------FIATPEQWRQHGISARQSH 59 + +VW + DLR+ DN+ + A S+ ++I V F T +++ G + ++ Sbjct: 2 IKTAIVWFKTDLRVEDNETIIKAILQSE-QIIPVYCFDDSHFETTKYGFKKTG--SFRAQ 58 Query: 60 FIYASLLQVQKSLSQ--KGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEV 117 F+ SL + K+L G+V + IE + + + K+F R+ E Sbjct: 59 FLLESLQDLDKNLRAIGSGLVITKGK-----PEIE-IPKIAKEYKAQKVFSKREVSFEEK 112 Query: 118 RRDKLLEKRL-QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRS 176 + +K+++ L + R ++F S L + + V+T FRK Q+ A +R+ Sbjct: 113 KTEKMVQNELFKLRCELETFSTSTLYHAEDLPFSIRNIPDVFTNFRKKTEQD---ATIRT 169 Query: 177 LPVPAIRLTGP-VTPSNIPRFFDYPFQ--AIDP----MFPIGEQNALHILRK--FCKEKV 227 + ++ P +T ++P D + ID F GE A++ L F + Sbjct: 170 VFKKPEKINSPKITTLSLPTLEDLGLECKTIDSRAAIQFKGGETEAINRLNHYFFQTNSI 229 Query: 228 YYYVEQRD-IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELI 286 Y + R+ + +S+ SP+L++G +SPR +N +K+ +L ++ + EL+ Sbjct: 230 SNYKKTRNGMVGENYSSKFSPWLALGCISPRFIYNEIKK--YELQFGANDSSYWLIFELL 287 Query: 287 WREFYRHLMAFYPSVCMGKPFIPWTEKIEWNK----DSHLLQAWKQGYTGFPIIDAAMRQ 342 WR+F+R + Y + K FI K E + L W G T I+A M + Sbjct: 288 WRDFFRFMFKKYQT----KFFIYLGIKTEKGNSKSLNDKLFSQWINGKTKSDFINANMLE 343 Query: 343 LNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDS 402 L G+M NR R AS+ +L +DWR+G YF QL+D D+ SN G W + A GND Sbjct: 344 LKLTGFMSNRGRQNVASYFCNELNMDWRLGAAYFEEQLIDYDVCSNWGNWAYLAGVGNDP 403 Query: 403 VPYFRIFNPTIQGKRFDPQGTFIRHWL 429 + R FN Q +D F WL Sbjct: 404 RGH-RYFNIEKQASDYDKNKEFRELWL 429 >gi|291389942|ref|XP_002711467.1| PREDICTED: cryptochrome 1 (photolyase-like) [Oryctolagus cuniculus] Length = 587 Score = 131 bits (329), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 134/495 (27%), Positives = 204/495 (41%), Gaps = 54/495 (10%) Query: 7 MSVHLV-WLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASL 65 M V+ V W R LR+ DN AL +D + V+I P + + F+ L Sbjct: 1 MGVNAVHWFRKGLRLHDNPALKECIQGADT-IRCVYILDPWFAGSSNVGINRWRFLLQCL 59 Query: 66 LQVQ---KSLSQKGIVFQYHQCSNFDDSI-EWLDSYCLQQRVTKLFYNRQYEINEVRRDK 121 + + L+ + V + F EW +T+L E RD Sbjct: 60 EDLDANLRKLNSRLFVIRGQPADVFPRLFKEW--------NITRLSIEYDSEPFGKERDA 111 Query: 122 LLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLV-QADLRSLPVP 180 ++K + S L L+ +++ P Q L+ + + +PV Sbjct: 112 AIKKLASEAGVEVIVRISHTL---YDLDKIIELNGGQPPLTYKRFQTLISKMEPLEIPVE 168 Query: 181 AI------RLTGPVTPS-----NIPRFFDYPFQA---IDPMFPIGEQNALHILRKFCKEK 226 I + T PV+ +P + F ++P GE AL L + + K Sbjct: 169 TITSDVIEKCTTPVSDDHDEKYGVPSLEELGFDTDGLSSAVWPGGETEALTRLERHLERK 228 Query: 227 VYYYVEQRDIPAIQGTS------QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFS 280 + V + P + S LSPYL G LS R + +L + + + K S S Sbjct: 229 AW--VANFERPRMNANSLLASPTGLSPYLRFGCLSCRLFYFKLTDLYKKVK-KNSSPPLS 285 Query: 281 WLNELIWREFYRHLMAFYPSV--CMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDA 338 +L+WREF+ P G P +I W+K+ L W +G TGFP IDA Sbjct: 286 LYGQLLWREFFYTAATNNPRFDKMEGNPI---CVQIPWDKNPEALAKWAEGQTGFPWIDA 342 Query: 339 AMRQLNTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAAS 397 M QL GW+H+ R A FL + DL + W G + F LLD D + N G W W S Sbjct: 343 IMTQLRQEGWIHHLARHAVACFLTRGDLWISWEEGMKVFEELLLDADWSINAGSWMW-LS 401 Query: 398 TGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSW------LDKND 451 + +F + P G+R DP G +IR +LP L P +YI+ P + + K Sbjct: 402 CSSFFQQFFHCYCPVGFGRRTDPNGDYIRRYLPVLRGFPAKYIYDPWNAPEGIQKVAKCL 461 Query: 452 LSLNYPLPIVDHKKA 466 + +NYP P+V+H +A Sbjct: 462 IGINYPKPMVNHAEA 476 >gi|114646730|ref|XP_509339.2| PREDICTED: cryptochrome-1 [Pan troglodytes] Length = 586 Score = 131 bits (329), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 135/496 (27%), Positives = 203/496 (40%), Gaps = 56/496 (11%) Query: 7 MSVHLV-WLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASL 65 M V+ V W R LR+ DN AL +D + V+I P + + F+ L Sbjct: 1 MGVNAVHWFRKGLRLHDNPALKECIQGADT-IRCVYILDPWFAGSSNVGINRWRFLLQCL 59 Query: 66 LQVQ---KSLSQKGIVFQYHQCSNFDDSI-EWLDSYCLQQRVTKLFYNRQYEINEVRRDK 121 + + L+ + V + F EW +TKL E RD Sbjct: 60 EDLDANLRKLNSRLFVIRGQPADVFPRLFKEW--------NITKLSIEYDSEPFGKERDA 111 Query: 122 LLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPA 181 ++K + S L L+ +++ P Q L+ + + L +P Sbjct: 112 AIKKLATEAGVEVIVRISHTL---YDLDKIIELNGGQPPLTYKRFQTLI-SKMEPLEIPV 167 Query: 182 IRLTGPV-----TP--------SNIPRFFDYPFQA---IDPMFPIGEQNALHILRKFCKE 225 +T V TP +P + F ++P GE AL L + + Sbjct: 168 ETITSEVIEKCTTPLSDDHDEKYGVPSLEELGFDTDGLSSAVWPGGETEALTRLERHLER 227 Query: 226 KVYYYVEQRDIPAIQGTS------QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAF 279 K + V + P + S LSPYL G LS R + +L + + + K S Sbjct: 228 KAW--VANFERPRMNANSLLASPTGLSPYLRFGCLSCRLFYFKLTDLYKKVK-KNSSPPL 284 Query: 280 SWLNELIWREFYRHLMAFYPSV--CMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIID 337 S +L+WREF+ P G P +I W+K+ L W +G TGFP ID Sbjct: 285 SLYGQLLWREFFYTAATNNPRFDKMEGNPI---CVQIPWDKNPEALAKWAEGRTGFPWID 341 Query: 338 AAMRQLNTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAA 396 A M QL GW+H+ R A FL + DL + W G + F LLD D + N G W W Sbjct: 342 AIMTQLRQEGWIHHLARHAVACFLTRGDLWISWEEGMKVFEELLLDADWSINAGSWMW-L 400 Query: 397 STGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSW------LDKN 450 S + +F + P G+R DP G +IR +LP L P +YI+ P + + K Sbjct: 401 SCSSFFQQFFHCYCPVGFGRRTDPNGDYIRRYLPVLRGFPAKYIYDPWNAPEGIQKVAKC 460 Query: 451 DLSLNYPLPIVDHKKA 466 + +NYP P+V+H +A Sbjct: 461 LIGVNYPKPMVNHAEA 476 >gi|157131015|ref|XP_001655778.1| DNA photolyase [Aedes aegypti] gi|108871687|gb|EAT35912.1| DNA photolyase [Aedes aegypti] Length = 820 Score = 131 bits (329), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 138/501 (27%), Positives = 204/501 (40%), Gaps = 66/501 (13%) Query: 13 WLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQKSL 72 W R LR+ DN AL ++ VF+ P + + F+ L + ++L Sbjct: 49 WFRKGLRLHDNPALREGLKDA-VSFRCVFVIDPWFAGSSNVGINKWRFLLQCLEDLDRNL 107 Query: 73 ---SQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH 129 + + V + + + CL F +VR + E Sbjct: 108 RKLNSRLFVIRGQPADALPKLFKEWGTTCL------TFEEDPEPFGKVRDHNISE----- 156 Query: 130 RVICKSFDDSVLLPPGSILNHALQMYKVY-----TPFRKALIQNLVQADLRSL-----PV 179 +CK V+ S ++H L YK+ R L + QA + S+ P Sbjct: 157 --MCKELGIEVI----SAVSHTL--YKLERIIEKNGGRAPLTYHQFQAIIASMDAPPQPE 208 Query: 180 PAIRL---TGPVTPS--------NIPRFFDYPFQAIDPMFPI---GEQNALHILRKFCKE 225 PAI L TP +P + F+ PI GE AL L + + Sbjct: 209 PAITLDTIANATTPQYEDHDDKYGVPTLEELGFETEGLKPPIWVGGETEALARLERHLER 268 Query: 226 K--VYYYVEQRDIPAIQGTSQ--LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSW 281 K V + + P SQ LSPYL G LS R + +L + + IK S Sbjct: 269 KAWVASFGRPKMTPQSLLASQTGLSPYLRFGCLSTRLFYYQLTDLYKK--IKKACPPLSL 326 Query: 282 LNELIWREFYRHLMAFYPSV--CMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAA 339 +L+WREF+ P+ G P +I W++++ L W G TGFP IDA Sbjct: 327 HGQLLWREFFYCAATKNPNFDKMAGNPIC---VQIPWDRNAEALAKWASGQTGFPWIDAI 383 Query: 340 MRQLNTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAAST 398 M QL GW+H+ R A FL + DL + W G + F LLD D + N G W W S Sbjct: 384 MTQLREEGWIHHLARHAVACFLTRGDLWISWEEGMKVFEELLLDADWSVNAGMWMW-LSC 442 Query: 399 GNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLD------KNDL 452 + +F + P G++ DP G +IR +LP L N PT+YIH P + + K + Sbjct: 443 SSFFQQFFHCYCPVKFGRKADPNGDYIRRYLPVLKNFPTRYIHEPWNAPETVQRTAKCII 502 Query: 453 SLNYPLPIVDHKKACHHTLNQ 473 YPLP+V+H A + + Sbjct: 503 GKEYPLPMVNHAIASRANMER 523 >gi|297579336|ref|ZP_06941264.1| RNA-binding cryptochrome Cry1 [Vibrio cholerae RC385] gi|297536930|gb|EFH75763.1| RNA-binding cryptochrome Cry1 [Vibrio cholerae RC385] Length = 462 Score = 131 bits (329), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 122/436 (27%), Positives = 189/436 (43%), Gaps = 38/436 (8%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKV-------IAVFIATPEQWRQHGISARQSHFI 61 + L W NDLR+ DN L A D + I F+A Q Q G + ++ F+ Sbjct: 5 IGLYWFTNDLRVNDNPLLEQASQQVDRLICLYCYPSITPFLARYAQQTQWGEAKKR--FL 62 Query: 62 YASLLQVQKSLSQKGI------VFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEIN 115 +L + SLS G +F Y + +E +T ++ + + Sbjct: 63 NQTLADLDHSLSTLGQKLWVTPLFPYQALRHLLTQVE----------ITDIYVDAMAGSD 112 Query: 116 EVRRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQ-MYKVYTPFRKALIQNLVQADL 174 E + + + I + S+L P L AL+ + +T FRK ++ L L Sbjct: 113 ERQAIARIHQDFSSVHIHQQALHSLLSEPQ--LPFALEALPSTFTQFRKQ-VETL---SL 166 Query: 175 RSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNAL-HILRKFCKEKVYYYVEQ 233 S P+ R+ P+ D + F GEQ L H F Y E Sbjct: 167 SSAPIGYPRVLPPIEQGWQLPLMDIVTEPNHSAFVGGEQAGLTHCQNYFSSMLPSRYKET 226 Query: 234 RD-IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYR 292 R+ + + +++ SP+L++G +SP+ + L+ + + + EL+WRE++ Sbjct: 227 RNGLDGMDYSTKFSPWLALGAVSPKTIYTMLQR--YEAVHGANDSTYWIFFELLWREYFY 284 Query: 293 HLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNR 352 Y + I + + LQ WK G T FPI++A MRQLN G+M NR Sbjct: 285 WYARRYGAKLFRFSGIGEKKPLTSFYAQRFLQ-WKHGVTPFPIVNACMRQLNQTGYMSNR 343 Query: 353 LRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPT 412 R + AS LV +L +DWR G YF +QL+D D+ SN G WQ+ A G D R FN Sbjct: 344 GRQLVASCLVHELGLDWRYGAAYFETQLVDYDVGSNWGNWQYLAGVGADPRGS-RQFNLA 402 Query: 413 IQGKRFDPQGTFIRHW 428 Q +DP+G F+ W Sbjct: 403 KQAHTYDPKGEFVAKW 418 >gi|4758072|ref|NP_004066.1| cryptochrome-1 [Homo sapiens] gi|332241714|ref|XP_003270025.1| PREDICTED: cryptochrome-1 [Nomascus leucogenys] gi|74735764|sp|Q16526|CRY1_HUMAN RecName: Full=Cryptochrome-1 gi|1304107|dbj|BAA12068.1| photolyase [Homo sapiens] gi|1313902|dbj|BAA12710.1| photolyase homolog [Homo sapiens] gi|22539647|gb|AAH30519.1| Cryptochrome 1 (photolyase-like) [Homo sapiens] gi|119618201|gb|EAW97795.1| cryptochrome 1 (photolyase-like), isoform CRA_a [Homo sapiens] gi|119618203|gb|EAW97797.1| cryptochrome 1 (photolyase-like), isoform CRA_a [Homo sapiens] gi|121647009|gb|ABM64209.1| photolyase-like cryptochrome 1 [Homo sapiens] gi|158254536|dbj|BAF83241.1| unnamed protein product [Homo sapiens] gi|261858374|dbj|BAI45709.1| cryptochrome 1 [synthetic construct] gi|325464291|gb|ADZ15916.1| cryptochrome 1 (photolyase-like) [synthetic construct] Length = 586 Score = 131 bits (329), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 135/496 (27%), Positives = 203/496 (40%), Gaps = 56/496 (11%) Query: 7 MSVHLV-WLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASL 65 M V+ V W R LR+ DN AL +D + V+I P + + F+ L Sbjct: 1 MGVNAVHWFRKGLRLHDNPALKECIQGADT-IRCVYILDPWFAGSSNVGINRWRFLLQCL 59 Query: 66 LQVQ---KSLSQKGIVFQYHQCSNFDDSI-EWLDSYCLQQRVTKLFYNRQYEINEVRRDK 121 + + L+ + V + F EW +TKL E RD Sbjct: 60 EDLDANLRKLNSRLFVIRGQPADVFPRLFKEW--------NITKLSIEYDSEPFGKERDA 111 Query: 122 LLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPA 181 ++K + S L L+ +++ P Q L+ + + L +P Sbjct: 112 AIKKLATEAGVEVIVRISHTL---YDLDKIIELNGGQPPLTYKRFQTLI-SKMEPLEIPV 167 Query: 182 IRLTGPV-----TP--------SNIPRFFDYPFQA---IDPMFPIGEQNALHILRKFCKE 225 +T V TP +P + F ++P GE AL L + + Sbjct: 168 ETITSEVIEKCTTPLSDDHDEKYGVPSLEELGFDTDGLSSAVWPGGETEALTRLERHLER 227 Query: 226 KVYYYVEQRDIPAIQGTS------QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAF 279 K + V + P + S LSPYL G LS R + +L + + + K S Sbjct: 228 KAW--VANFERPRMNANSLLASPTGLSPYLRFGCLSCRLFYFKLTDLYKKVK-KNSSPPL 284 Query: 280 SWLNELIWREFYRHLMAFYPSV--CMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIID 337 S +L+WREF+ P G P +I W+K+ L W +G TGFP ID Sbjct: 285 SLYGQLLWREFFYTAATNNPRFDKMEGNPI---CVQIPWDKNPEALAKWAEGRTGFPWID 341 Query: 338 AAMRQLNTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAA 396 A M QL GW+H+ R A FL + DL + W G + F LLD D + N G W W Sbjct: 342 AIMTQLRQEGWIHHLARHAVACFLTRGDLWISWEEGMKVFEELLLDADWSINAGSWMW-L 400 Query: 397 STGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSW------LDKN 450 S + +F + P G+R DP G +IR +LP L P +YI+ P + + K Sbjct: 401 SCSSFFQQFFHCYCPVGFGRRTDPNGDYIRRYLPVLRGFPAKYIYDPWNAPEGIQKVAKC 460 Query: 451 DLSLNYPLPIVDHKKA 466 + +NYP P+V+H +A Sbjct: 461 LIGVNYPKPMVNHAEA 476 >gi|301784579|ref|XP_002927704.1| PREDICTED: cryptochrome-1-like [Ailuropoda melanoleuca] gi|281347021|gb|EFB22605.1| hypothetical protein PANDA_017512 [Ailuropoda melanoleuca] Length = 587 Score = 131 bits (329), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 135/496 (27%), Positives = 203/496 (40%), Gaps = 56/496 (11%) Query: 7 MSVHLV-WLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASL 65 M V+ V W R LR+ DN AL +D + V+I P + + F+ L Sbjct: 1 MGVNAVHWFRKGLRLHDNPALKECIQGADT-IRCVYILDPWFAGSSNVGINRWRFLLQCL 59 Query: 66 LQVQ---KSLSQKGIVFQYHQCSNFDDSI-EWLDSYCLQQRVTKLFYNRQYEINEVRRDK 121 + + L+ + V + F EW +TKL E RD Sbjct: 60 EDLDANLRKLNSRLFVIRGQPADVFPRLFKEW--------NITKLSIEYDSEPFGKERDA 111 Query: 122 LLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPA 181 ++K + S L L+ +++ P Q L+ + + L +P Sbjct: 112 AIKKLATEAGVEVIVRISHTL---YDLDKIIELNGGQPPLTYKRFQTLI-SKMEPLEIPV 167 Query: 182 IRLTGPV-----TP--------SNIPRFFDYPFQA---IDPMFPIGEQNALHILRKFCKE 225 +T V TP +P + F ++P GE AL L + + Sbjct: 168 ETITSEVIEKCTTPLSDDHDEKYGVPSLEELGFDTDGLPSAVWPGGETEALTRLERHLER 227 Query: 226 KVYYYVEQRDIPAIQGTS------QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAF 279 K + V + P + S LSPYL G LS R + +L + + + K S Sbjct: 228 KAW--VANFERPRMNANSLLASPTGLSPYLRFGCLSCRLFYFKLTDLYKKVK-KNSSPPL 284 Query: 280 SWLNELIWREFYRHLMAFYPSV--CMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIID 337 S +L+WREF+ P G P +I W+K+ L W +G TGFP ID Sbjct: 285 SLYGQLLWREFFYTAATNNPRFDKMEGNPI---CVQIPWDKNPEALAKWAEGRTGFPWID 341 Query: 338 AAMRQLNTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAA 396 A M QL GW+H+ R A FL + DL + W G + F LLD D + N G W W Sbjct: 342 AIMTQLRQEGWIHHLARHAVACFLTRGDLWISWEEGMKVFEELLLDADWSINAGSWMW-L 400 Query: 397 STGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSW------LDKN 450 S + +F + P G+R DP G +IR +LP L P +YI+ P + + K Sbjct: 401 SCSSFFQQFFHCYCPVGFGRRTDPNGDYIRRYLPVLRGFPAKYIYDPWNAPEGIQKVAKC 460 Query: 451 DLSLNYPLPIVDHKKA 466 + +NYP P+V+H +A Sbjct: 461 LIGVNYPKPMVNHAEA 476 >gi|157427956|ref|NP_001098885.1| cryptochrome-1 [Bos taurus] gi|157278893|gb|AAI34487.1| CRY1 protein [Bos taurus] Length = 587 Score = 131 bits (329), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 135/496 (27%), Positives = 203/496 (40%), Gaps = 56/496 (11%) Query: 7 MSVHLV-WLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASL 65 M V+ V W R LR+ DN AL +D + V+I P + + F+ L Sbjct: 1 MGVNAVHWFRKGLRLHDNPALKECIQGADT-IRCVYILDPWFAGSSNVGINRWRFLLQCL 59 Query: 66 LQVQ---KSLSQKGIVFQYHQCSNFDDSI-EWLDSYCLQQRVTKLFYNRQYEINEVRRDK 121 + + L+ + V + F EW +TKL E RD Sbjct: 60 EDLDANLRKLNSRLFVIRGQPADVFPRLFKEW--------NITKLSIEYDSEPFGKERDA 111 Query: 122 LLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPA 181 ++K + S L L+ +++ P Q L+ + + L +P Sbjct: 112 AIKKLATEAGVEVIVRISHTL---YDLDKIIELNGGQPPLTYKRFQTLI-SKMEPLEIPV 167 Query: 182 IRLTGPV-----TP--------SNIPRFFDYPFQA---IDPMFPIGEQNALHILRKFCKE 225 +T V TP +P + F ++P GE AL L + + Sbjct: 168 ETITSEVIEKCTTPLSDDHDEKYGVPSLEELGFDTDGLPSAVWPGGETEALTRLERHLER 227 Query: 226 KVYYYVEQRDIPAIQGTS------QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAF 279 K + V + P + S LSPYL G LS R + +L + + + K S Sbjct: 228 KAW--VANFERPRMNANSLLASPTGLSPYLRFGCLSCRLFYFKLTDLYKKVK-KNSSPPL 284 Query: 280 SWLNELIWREFYRHLMAFYPSV--CMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIID 337 S +L+WREF+ P G P +I W+K+ L W +G TGFP ID Sbjct: 285 SLYGQLLWREFFYTAATNNPRFDKMEGNPIC---VQIPWDKNPEALAKWAEGRTGFPWID 341 Query: 338 AAMRQLNTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAA 396 A M QL GW+H+ R A FL + DL + W G + F LLD D + N G W W Sbjct: 342 AIMTQLRQEGWIHHLARHAVACFLTRGDLWISWEEGMKVFEELLLDADWSINAGSWMW-L 400 Query: 397 STGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSW------LDKN 450 S + +F + P G+R DP G +IR +LP L P +YI+ P + + K Sbjct: 401 SCSSFFQQFFHCYCPVGFGRRTDPNGDYIRRYLPVLRGFPAKYIYDPWNAPEGIQKVAKC 460 Query: 451 DLSLNYPLPIVDHKKA 466 + +NYP P+V+H +A Sbjct: 461 LIGVNYPKPMVNHAEA 476 >gi|296212792|ref|XP_002752992.1| PREDICTED: cryptochrome-1 [Callithrix jacchus] Length = 586 Score = 130 bits (328), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 135/496 (27%), Positives = 203/496 (40%), Gaps = 56/496 (11%) Query: 7 MSVHLV-WLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASL 65 M V+ V W R LR+ DN AL +D + V+I P + + F+ L Sbjct: 1 MGVNAVHWFRKGLRLHDNPALKECIQGADT-IRCVYILDPWFAGSSNVGINRWRFLLQCL 59 Query: 66 LQVQ---KSLSQKGIVFQYHQCSNFDDSI-EWLDSYCLQQRVTKLFYNRQYEINEVRRDK 121 + + L+ + V + F EW +TKL E RD Sbjct: 60 EDLDANLRKLNSRLFVIRGQPADVFPRLFKEW--------NITKLSIEYDSEPFGKERDA 111 Query: 122 LLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPA 181 ++K + S L L+ +++ P Q L+ + + L +P Sbjct: 112 AIKKLATEAGVEVIVRISHTL---YDLDKIIELNGGQPPLTYKRFQTLI-SKMEPLEIPV 167 Query: 182 IRLTGPV-----TP--------SNIPRFFDYPFQA---IDPMFPIGEQNALHILRKFCKE 225 +T V TP +P + F ++P GE AL L + + Sbjct: 168 ETITSEVIEKCTTPLSDDHDEKYGVPSLEELGFDTDGLSSAVWPGGETEALTRLERHLER 227 Query: 226 KVYYYVEQRDIPAIQGTS------QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAF 279 K + V + P + S LSPYL G LS R + +L + + + K S Sbjct: 228 KAW--VANFERPRMNANSLLASPTGLSPYLRFGCLSCRLFYFKLTDLYKKVK-KNSSPPL 284 Query: 280 SWLNELIWREFYRHLMAFYPSV--CMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIID 337 S +L+WREF+ P G P +I W+K+ L W +G TGFP ID Sbjct: 285 SLYGQLLWREFFYTAATNNPRFDKMEGNPI---CVQIPWDKNPEALAKWAEGRTGFPWID 341 Query: 338 AAMRQLNTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAA 396 A M QL GW+H+ R A FL + DL + W G + F LLD D + N G W W Sbjct: 342 AIMTQLRQEGWIHHLARHAVACFLTRGDLWISWEEGMKVFEELLLDADWSINAGSWMW-L 400 Query: 397 STGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSW------LDKN 450 S + +F + P G+R DP G +IR +LP L P +YI+ P + + K Sbjct: 401 SCSSFFQQFFHCYCPVGFGRRTDPNGDYIRRYLPVLRGFPAKYIYDPWNAPEGIQKVAKC 460 Query: 451 DLSLNYPLPIVDHKKA 466 + +NYP P+V+H +A Sbjct: 461 LIGVNYPKPMVNHAEA 476 >gi|33333729|gb|AAQ11980.1| cryptochrome 1 [Rattus norvegicus] Length = 588 Score = 130 bits (328), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 137/496 (27%), Positives = 204/496 (41%), Gaps = 56/496 (11%) Query: 7 MSVHLV-WLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASL 65 M V+ V W R LR+ DN AL +D + V+I P + + F+ L Sbjct: 1 MGVNAVHWFRKGLRLHDNPALKECIQGADT-IRWVYILDPWFAGSSNVGINRWRFLLQCL 59 Query: 66 LQVQ---KSLSQKGIVFQYHQCSNFDDSI-EWLDSYCLQQRVTKLFYNRQYEINEVRRDK 121 + + L+ + V + F EW +TKL E RD Sbjct: 60 EDLDANLRKLNSRLFVIRGQPADVFPRLFKEW--------NITKLSIEYDSEPFGKERDA 111 Query: 122 LLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPA 181 ++K + S L L+ +++ P Q LV + + L +PA Sbjct: 112 AIKKLATEAGVEVIVRISHTL---YDLDKIIELNGGQPPLTYKRFQTLV-SKMEPLEMPA 167 Query: 182 IRLTGPV-----TP--------SNIPRFFDYPFQA---IDPMFPIGEQNALHILRKFCKE 225 +T V TP +P + F ++P GE AL L + + Sbjct: 168 DTITSDVIGKCTTPLSDDHDEKYGVPSLEELGFDTDGLSSAVWPGGETEALTRLERHLER 227 Query: 226 KVYYYVEQRDIPAIQGTS------QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAF 279 K + V + P + S LSPYL G LS R + +L + + + K S Sbjct: 228 KAW--VANFERPRMNANSLLASPTGLSPYLRFGCLSCRLFYFKLTDLYKKVK-KNSSPPL 284 Query: 280 SWLNELIWREFYRHLMAFYPSV--CMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIID 337 S +L+WREF+ P G P +I W+K+ L W +G TGFP ID Sbjct: 285 SLYGQLLWREFFYTAATNNPRFDKMEGNPIC---VQIPWDKNPEALAKWAEGRTGFPWID 341 Query: 338 AAMRQLNTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAA 396 A M QL GW+H+ R A FL + DL + W G + F LLD D + N G W W Sbjct: 342 AIMTQLRQEGWIHHLARHAVACFLTRGDLWISWEEGMKVFEELLLDADWSINAGSWMW-L 400 Query: 397 STGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSW------LDKN 450 S + +F + P G+R DP G +IR +LP L P +YI+ P + + K Sbjct: 401 SCSSFFQQFFHCYCPVGFGRRTDPNGDYIRRYLPVLRGFPAKYIYDPWNAPEGIQKVAKC 460 Query: 451 DLSLNYPLPIVDHKKA 466 + +NYP P+V+H +A Sbjct: 461 LIGVNYPKPMVNHAEA 476 >gi|82091801|sp|Q6ZZY0|CRY1_SYLBO RecName: Full=Cryptochrome-1 gi|45535501|emb|CAG14931.1| cryptochrome 1 [Sylvia borin] Length = 620 Score = 130 bits (328), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 137/495 (27%), Positives = 203/495 (41%), Gaps = 54/495 (10%) Query: 7 MSVHLV-WLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASL 65 M V+ V W R LR+ DN AL +D V V+I P + + F+ L Sbjct: 1 MGVNAVHWFRKGLRLHDNPALRECIQGADT-VRCVYILDPWFAGSSNVGINRWRFLLQCL 59 Query: 66 LQVQ---KSLSQKGIVFQYHQCSNFDDSI-EWLDSYCLQQRVTKLFYNRQYEINEVRRDK 121 + + L+ + V + F EW + KL E RD Sbjct: 60 EDLDANLRKLNSRLFVIRGQPADVFPRLFKEW--------NIAKLSIEYDSEPFGKERDA 111 Query: 122 LLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLV-QADLRSLPVP 180 ++K + S L L+ +++ P Q L+ + + +PV Sbjct: 112 AIKKLASEAGVEVIVRISHTL---YDLDKIIELNGGQPPLTYKRFQTLISRMEPLEMPVE 168 Query: 181 AI------RLTGPVTPS-----NIPRFFDYPFQA---IDPMFPIGEQNALHILRKFCKEK 226 I + T PV+ +P + F ++P GE AL L + + K Sbjct: 169 TITPEVMKKCTTPVSDDHDEKYGVPSLEELGFDTDGLPSAVWPGGETEALTRLERHLERK 228 Query: 227 VYYYVEQRDIPAIQGTS------QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFS 280 + V + P + S LSPYL G LS R + +L + + + K S S Sbjct: 229 AW--VANFERPRMNANSLLASPTGLSPYLRFGCLSCRLFYFKLTDLYKKVK-KNSSPPLS 285 Query: 281 WLNELIWREFYRHLMAFYPSV--CMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDA 338 +L+WREF+ P G P +I W+K+ L W +G TGFP IDA Sbjct: 286 LYGQLLWREFFYTAATNNPRFDKMEGNPIC---VQIPWDKNPEALAKWAEGRTGFPWIDA 342 Query: 339 AMRQLNTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAAS 397 M QL GW+H+ R A FL + DL + W G + F LLD D + N G W W S Sbjct: 343 IMTQLRQEGWIHHLARHAVACFLTRGDLWISWEEGMKVFEELLLDADWSVNAGSWMW-LS 401 Query: 398 TGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIH----APHSW--LDKND 451 + +F + P G+R DP G +IR +LP L P +YI+ AP S K Sbjct: 402 CSSFFQQFFHCYCPVGFGRRTDPNGDYIRRYLPVLRGFPAKYIYDPWNAPESIQKAAKCI 461 Query: 452 LSLNYPLPIVDHKKA 466 + +NYP P+V+H +A Sbjct: 462 IGVNYPKPMVNHAEA 476 >gi|170065332|ref|XP_001867895.1| cryptochrome-1 [Culex quinquefasciatus] gi|167882412|gb|EDS45795.1| cryptochrome-1 [Culex quinquefasciatus] Length = 539 Score = 130 bits (328), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 90/293 (30%), Positives = 138/293 (47%), Gaps = 31/293 (10%) Query: 208 FPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQG----TSQLSPYLSIGVLSPRQCWNRL 263 FP GE AL L+ + K + ++ + T+ LSPY+ G LS R L Sbjct: 198 FPGGETEALRRLQDYMSRKSWVCAFEKPNTSPNSLEPSTTVLSPYVKFGCLSARLFMAEL 257 Query: 264 KEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYP--------SVCMGKPFIPWTEKIE 315 K+ K S + +L+WREFY A P SVC+ ++ Sbjct: 258 KKVLAGQ--KHSQPPVSLVGQLMWREFYYCAAAAEPNFDKMVGNSVCL---------QVP 306 Query: 316 WNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK-DLLVDWRIGEE 374 W + L AW G TG+P IDA MRQL GW+H+ R A FL + DL + W G+ Sbjct: 307 WETNPEHLAAWTHGRTGYPFIDAIMRQLRQEGWIHHLARHAVACFLTRGDLWISWEEGQR 366 Query: 375 YFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNN 434 F LLD D A N G W W +++ +FR+++P GK+ DP+G +I+ ++PEL Sbjct: 367 VFEELLLDADWALNAGNWMWLSASAFFHQ-FFRVYSPVAFGKKTDPEGKYIKKYVPELAK 425 Query: 435 VPTQYIHAP-HSWLDKND-----LSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481 P I+ P + L+ + +YP IV H++ +++ A +++ Sbjct: 426 FPAGIIYEPWKANLETQKKLGCIIGKDYPHRIVIHEEISKKNISRMSEAYRKN 478 >gi|242020203|ref|XP_002430545.1| Deoxyribodipyrimidine photo-lyase, putative [Pediculus humanus corporis] gi|212515709|gb|EEB17807.1| Deoxyribodipyrimidine photo-lyase, putative [Pediculus humanus corporis] Length = 506 Score = 130 bits (328), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 141/494 (28%), Positives = 200/494 (40%), Gaps = 64/494 (12%) Query: 8 SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67 +VH W R LR+ DN +L NS VF+ P + + F+ L Sbjct: 13 TVH--WFRKGLRLHDNPSLREGIKNS-VTFRCVFVIDPWFAGSSNVGINKWRFLLQCLED 69 Query: 68 VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127 + +SL + + D L + T L + E RD L Sbjct: 70 LDRSLRKLNSRLFVIRGQPADT----LPKLFKEWGTTNLTFEEDPEPFGRVRD------L 119 Query: 128 QHRVICKSFDDSVLLPPGSIL---NHALQMYKVYTPFRKALIQNLVQADLRSLPVP---- 180 +CK SV+ L H ++ P Q ++ A++ P P Sbjct: 120 NIMAMCKELGISVVSKSSHTLYKLEHIIEKNGGNPPLTYHQFQTII-ANIGPPPEPEETV 178 Query: 181 -AIRLTGPVTP--------SNIPRFFDYPFQAIDPMFPI----GEQNALHILRKFCKEK- 226 A L G TP +P + F+ D + P GE AL L + + K Sbjct: 179 TANLLEGSQTPLSDDHDNKYGVPTLEELGFET-DKLKPTVWSGGESEALARLERHLERKA 237 Query: 227 -VYYYVEQRDIPAIQGTSQ--LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLN 283 V + + P SQ LSPYL G LS R + +L E + IK S Sbjct: 238 WVASFGHPKMTPQSLLASQTGLSPYLRFGCLSTRLFYYQLVELYKK--IKKAMPPLSLHG 295 Query: 284 ELIWREFYRHLMAFYPSVCMGKPFIPWTE-----KIEWNKDSHLLQAWKQGYTGFPIIDA 338 +L+WREF FY + F E +I W++++ L W G TGFP IDA Sbjct: 296 QLLWREF------FYCAATKNPNFDKMNENPICVQIPWDENAQALAKWANGQTGFPWIDA 349 Query: 339 AMRQLNTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAAS 397 M QL GW+H+ R A FL + DL + W G + F LLD D + N G W W S Sbjct: 350 IMTQLREEGWIHHLARHAVACFLTRGDLWISWEEGMKVFDELLLDADWSVNAGMWMW-LS 408 Query: 398 TGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWL--------DK 449 + +F + P G++ DP G +IR +LP L N PT+YIH P WL K Sbjct: 409 CSSFFQQFFHCYCPVRFGRKADPNGDYIRKYLPILKNFPTKYIHEP--WLAPETEQRAAK 466 Query: 450 NDLSLNYPLPIVDH 463 + ++PLP+V+H Sbjct: 467 CIIGKDFPLPMVNH 480 >gi|73969270|ref|XP_862753.1| PREDICTED: similar to cryptochrome 1 (photolyase-like) isoform 2 [Canis familiaris] Length = 587 Score = 130 bits (328), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 135/496 (27%), Positives = 203/496 (40%), Gaps = 56/496 (11%) Query: 7 MSVHLV-WLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASL 65 M V+ V W R LR+ DN AL +D + V+I P + + F+ L Sbjct: 1 MGVNAVHWFRKGLRLHDNPALKECIQGADT-IRCVYILDPWFAGSSNVGINRWRFLLQCL 59 Query: 66 LQVQ---KSLSQKGIVFQYHQCSNFDDSI-EWLDSYCLQQRVTKLFYNRQYEINEVRRDK 121 + + L+ + V + F EW +TKL E RD Sbjct: 60 EDLDANLRKLNSRLFVIRGQPADVFPRLFKEW--------NITKLSIEYDSEPFGKERDA 111 Query: 122 LLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPA 181 ++K + S L L+ +++ P Q L+ + + L +P Sbjct: 112 AIKKLATEAGVEVIVRISHTL---YDLDKIIELNGGQPPLTYKRFQTLI-SKMEPLEIPV 167 Query: 182 IRLTGPV-----TP--------SNIPRFFDYPFQA---IDPMFPIGEQNALHILRKFCKE 225 +T V TP +P + F ++P GE AL L + + Sbjct: 168 ETITSEVVEKCTTPLSDDHDEKYGVPSLEELGFDTDGLPSAVWPGGETEALTRLERHLER 227 Query: 226 KVYYYVEQRDIPAIQGTS------QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAF 279 K + V + P + S LSPYL G LS R + +L + + + K S Sbjct: 228 KAW--VANFERPRMNANSLLASPTGLSPYLRFGCLSCRLFYFKLTDLYKKVK-KNSSPPL 284 Query: 280 SWLNELIWREFYRHLMAFYPSV--CMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIID 337 S +L+WREF+ P G P +I W+K+ L W +G TGFP ID Sbjct: 285 SLYGQLLWREFFYTAATNNPRFDKMEGNPI---CVQIPWDKNPEALAKWAEGRTGFPWID 341 Query: 338 AAMRQLNTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAA 396 A M QL GW+H+ R A FL + DL + W G + F LLD D + N G W W Sbjct: 342 AIMTQLRQEGWIHHLARHAVACFLTRGDLWISWEEGMKVFEELLLDADWSINAGSWMW-L 400 Query: 397 STGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSW------LDKN 450 S + +F + P G+R DP G +IR +LP L P +YI+ P + + K Sbjct: 401 SCSSFFQQFFHCYCPVGFGRRTDPNGDYIRRYLPVLRGFPAKYIYDPWNAPEGIQKVAKC 460 Query: 451 DLSLNYPLPIVDHKKA 466 + +NYP P+V+H +A Sbjct: 461 LIGVNYPKPMVNHAEA 476 >gi|311255201|ref|XP_003126127.1| PREDICTED: cryptochrome-1-like [Sus scrofa] Length = 588 Score = 130 bits (328), Expect = 4e-28, Method: Compositional matrix adjust. Identities = 135/496 (27%), Positives = 203/496 (40%), Gaps = 56/496 (11%) Query: 7 MSVHLV-WLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASL 65 M V+ V W R LR+ DN AL +D + V+I P + + F+ L Sbjct: 1 MGVNAVHWFRKGLRLHDNPALKECIQGADT-IRCVYILDPWFAGSSNVGINRWRFLLQCL 59 Query: 66 LQVQ---KSLSQKGIVFQYHQCSNFDDSI-EWLDSYCLQQRVTKLFYNRQYEINEVRRDK 121 + + L+ + V + F EW +TKL E RD Sbjct: 60 EDLDANLRKLNSRLFVIRGQPADVFPRLFKEW--------NITKLSIEYDSEPFGKERDA 111 Query: 122 LLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPA 181 ++K + S L L+ +++ P Q L+ + + L +P Sbjct: 112 AIKKLATEAGVEVIVRISHTL---YDLDKIIELNGGQPPLTYKRFQTLI-SKMEPLEIPV 167 Query: 182 IRLTGPV-----TP--------SNIPRFFDYPFQA---IDPMFPIGEQNALHILRKFCKE 225 +T V TP +P + F ++P GE AL L + + Sbjct: 168 ETITSEVIEKCTTPLSDDHDEKYGVPSLEELGFDTDGLPSAVWPGGETEALTRLERHLER 227 Query: 226 KVYYYVEQRDIPAIQGTS------QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAF 279 K + V + P + S LSPYL G LS R + +L + + + K S Sbjct: 228 KAW--VANFERPRMNANSLLASPTGLSPYLRFGCLSCRLFYFKLTDLYKKVK-KNSSPPL 284 Query: 280 SWLNELIWREFYRHLMAFYPSV--CMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIID 337 S +L+WREF+ P G P +I W+K+ L W +G TGFP ID Sbjct: 285 SLYGQLLWREFFYTAATNNPRFDKMEGNPI---CVQIPWDKNPEALAKWAEGRTGFPWID 341 Query: 338 AAMRQLNTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAA 396 A M QL GW+H+ R A FL + DL + W G + F LLD D + N G W W Sbjct: 342 AIMTQLRQEGWIHHLARHAVACFLTRGDLWISWEEGMKVFEELLLDADWSINAGSWMW-L 400 Query: 397 STGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSW------LDKN 450 S + +F + P G+R DP G +IR +LP L P +YI+ P + + K Sbjct: 401 SCSSFFQQFFHCYCPVGFGRRTDPNGDYIRRYLPVLRGFPAKYIYDPWNAPEGIQKVAKC 460 Query: 451 DLSLNYPLPIVDHKKA 466 + +NYP P+V+H +A Sbjct: 461 LIGVNYPKPMVNHAEA 476 >gi|226326775|ref|ZP_03802293.1| hypothetical protein PROPEN_00635 [Proteus penneri ATCC 35198] gi|225204612|gb|EEG86966.1| hypothetical protein PROPEN_00635 [Proteus penneri ATCC 35198] Length = 158 Score = 130 bits (328), Expect = 4e-28, Method: Compositional matrix adjust. Identities = 59/150 (39%), Positives = 95/150 (63%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 VHLVW R+DLR+TDNKAL+ AC + A+V A+F TPEQW+ H ++ FI+ +LL + Sbjct: 6 VHLVWFRHDLRVTDNKALFHACQDKQAQVHAIFTVTPEQWKAHNMALSCQAFIHNALLDL 65 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128 SL++ I + ++ + + YC Q VT LF+N QY +NE RRDK + + L+ Sbjct: 66 STSLAKLNIPLTIVISDTYSNAADKVAEYCQQHHVTALFFNHQYALNEQRRDKKVTELLK 125 Query: 129 HRVICKSFDDSVLLPPGSILNHALQMYKVY 158 ++ ++ D+V +PPG+++ +M+KV+ Sbjct: 126 NKTTVYTYHDNVFIPPGNVVTQQGEMFKVF 155 >gi|156383457|ref|XP_001632850.1| predicted protein [Nematostella vectensis] gi|156219912|gb|EDO40787.1| predicted protein [Nematostella vectensis] Length = 492 Score = 130 bits (328), Expect = 4e-28, Method: Compositional matrix adjust. Identities = 126/491 (25%), Positives = 211/491 (42%), Gaps = 60/491 (12%) Query: 8 SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67 SVH W R DLR+ DN +L A+ N + +++ E R ISA + +F+ L Sbjct: 4 SVH--WFRKDLRLHDNPSLLASLDNC-STFFPIYVLDMESARASKISANRWNFLCECLEA 60 Query: 68 VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLE--- 124 + + L G + +I+ L + V +L + R+ E +RD +++ Sbjct: 61 LDRQLRVLGSRLFVIR----GRAIDVLPRLFHEWSVNRLTFERESEPAGRQRDTVIQMLA 116 Query: 125 -----KRLQHRV--------ICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQ 171 + LQH + ++ D + + + A Q+ P + + + + Sbjct: 117 ENANVQLLQHNAHLLYDTDEVLETNDGKLPMTFDEMAKTAEQLGPPCPPC-QTVDKTVFG 175 Query: 172 ADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDP-----MFPIGEQNALHILRKFCKEK 226 A + + + G +P+ D+ + + + GE A+ L ++K Sbjct: 176 ACITPVGLDHAEKYG------VPQLSDFGGKELGRATAKLFWKGGELEAMRRLNLALQKK 229 Query: 227 VYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLL-IKPKSGAFSWLNEL 285 + + LSPY+ G LSP +RL E+ + KP ++ L Sbjct: 230 KFIKPPLSADTLLASDRALSPYMRFGCLSPCYILDRLTTEYQRTMGSKPPETLYT---NL 286 Query: 286 IWREFYRHLMAFYPS--VCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQL 343 +WREF+ + P MG P +I W + L WKQG TGFP IDA MRQL Sbjct: 287 LWREFFFATASTNPDHHRMMGNPL---ALQIPWEQHPEALSLWKQGKTGFPWIDAIMRQL 343 Query: 344 NTIGWMHNRLRMITASFLVKDLL-VDWRIGEEYFMSQLLDGDLASNNGGWQWAASTG--N 400 GW+H+ R FL + L V W G + F LD + + N G W W + + + Sbjct: 344 REEGWIHHLARQAVGCFLTRGCLWVSWEEGFKAFDELQLDAEWSLNAGNWLWLSCSSYVH 403 Query: 401 DSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND--------L 452 +VP+ + P GK+ DP G +IR ++PEL +PT+++H P W + + Sbjct: 404 GAVPW---YCPVEVGKQVDPTGEYIRTFVPELRRLPTKFLHEP--WKAPSSVQREAGCIV 458 Query: 453 SLNYPLPIVDH 463 +YP P+V+H Sbjct: 459 GKDYPQPMVNH 469 >gi|134082999|emb|CAK42762.1| unnamed protein product [Aspergillus niger] Length = 567 Score = 130 bits (328), Expect = 4e-28, Method: Compositional matrix adjust. Identities = 147/515 (28%), Positives = 217/515 (42%), Gaps = 60/515 (11%) Query: 1 MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHF 60 M +A +V + W R DLR+ DN AL AA + + I +F P Q + + F Sbjct: 1 MPPQSAPTV-IFWHRTDLRLHDNPALQAALSLNPSTFIPIFTWDPHYAYQVRVGPNRWRF 59 Query: 61 IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLF---------YNRQ 111 LL+ Q LSQ Q W+ Q KLF + Sbjct: 60 ----LLECQNDLSQSYRKLNPKQKL-------WVVREAPQTVFPKLFKAWGATHLVFESD 108 Query: 112 YEINEVRRDKLLEKRLQH---RVICKSF------DDSVLLPPGSILNHALQMYKVYTPFR 162 + RD+ + K VI KS D+ V G Q+ K Sbjct: 109 TDGYARERDETIRKLANEAGVEVIVKSGRTLFDSDEVVKQNKGEPTMSIHQVEKAIEQIN 168 Query: 163 KALIQNLVQADLRSLPVP----AIRLTGPVTPSNIPRFFDY---PFQAIDPMFPIGEQNA 215 + V A R +P P +R P +IP + P QA P GE A Sbjct: 169 NGVPDRPVDAPER-IPDPLGEEKMRDISPKGDFSIPTLDELSIDPSQATSPHHG-GESIA 226 Query: 216 LHILRKFCKEKVYY---YVEQRDIPAI---QGTSQLSPYLSIGVLSPRQCWNRLKEEFV- 268 L +L + ++ Y + + + PA Q T+ LSP+L G LS R+ W+ +++ Sbjct: 227 LEMLTTYLQQNEDYIATFEKPKTSPAAFHPQATTLLSPHLHFGSLSVRKFWHDVQDTLQQ 286 Query: 269 -DLLIKPKSGAFSWL-NELIWRE-FYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQA 325 + KP S + L +L++RE F+ A P + KI + + Sbjct: 287 RESAHKPTSDLPTNLPGQLLFREMFFAAQAALGPVYAQTR-----GNKIVRFQAEVWFRR 341 Query: 326 WKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD-LLVDWRIGEEYFMSQLLDGD 384 WK+G TGFP IDA MRQL GW+H+ R A FL + V W G E F L+D + Sbjct: 342 WKEGRTGFPWIDALMRQLKNEGWIHHLGRHSVACFLTRGGCYVHWERGAEVFEEWLIDHE 401 Query: 385 LASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAP- 443 ASN G W W + T Y R ++P GK++DP+G FIRH++PEL + +YI+ P Sbjct: 402 TASNVGNWMWLSCTAF-FTQYNRCYSPVAFGKKWDPEGRFIRHYIPELEHYDKKYIYEPW 460 Query: 444 HSWLDKNDLSLNYPLPIVD---HKKACHHTLNQYY 475 + L+ +YP P+ D ++ C + + Y Sbjct: 461 KAPLEDQKRWKSYPEPMFDFDERRQTCIAQMKEAY 495 >gi|73969272|ref|XP_531757.2| PREDICTED: similar to cryptochrome 1 (photolyase-like) isoform 1 [Canis familiaris] Length = 606 Score = 130 bits (328), Expect = 4e-28, Method: Compositional matrix adjust. Identities = 135/496 (27%), Positives = 203/496 (40%), Gaps = 56/496 (11%) Query: 7 MSVHLV-WLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASL 65 M V+ V W R LR+ DN AL +D + V+I P + + F+ L Sbjct: 1 MGVNAVHWFRKGLRLHDNPALKECIQGADT-IRCVYILDPWFAGSSNVGINRWRFLLQCL 59 Query: 66 LQVQ---KSLSQKGIVFQYHQCSNFDDSI-EWLDSYCLQQRVTKLFYNRQYEINEVRRDK 121 + + L+ + V + F EW +TKL E RD Sbjct: 60 EDLDANLRKLNSRLFVIRGQPADVFPRLFKEW--------NITKLSIEYDSEPFGKERDA 111 Query: 122 LLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPA 181 ++K + S L L+ +++ P Q L+ + + L +P Sbjct: 112 AIKKLATEAGVEVIVRISHTL---YDLDKIIELNGGQPPLTYKRFQTLI-SKMEPLEIPV 167 Query: 182 IRLTGPV-----TP--------SNIPRFFDYPFQA---IDPMFPIGEQNALHILRKFCKE 225 +T V TP +P + F ++P GE AL L + + Sbjct: 168 ETITSEVVEKCTTPLSDDHDEKYGVPSLEELGFDTDGLPSAVWPGGETEALTRLERHLER 227 Query: 226 KVYYYVEQRDIPAIQGTS------QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAF 279 K + V + P + S LSPYL G LS R + +L + + + K S Sbjct: 228 KAW--VANFERPRMNANSLLASPTGLSPYLRFGCLSCRLFYFKLTDLYKKVK-KNSSPPL 284 Query: 280 SWLNELIWREFYRHLMAFYPSV--CMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIID 337 S +L+WREF+ P G P +I W+K+ L W +G TGFP ID Sbjct: 285 SLYGQLLWREFFYTAATNNPRFDKMEGNPIC---VQIPWDKNPEALAKWAEGRTGFPWID 341 Query: 338 AAMRQLNTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAA 396 A M QL GW+H+ R A FL + DL + W G + F LLD D + N G W W Sbjct: 342 AIMTQLRQEGWIHHLARHAVACFLTRGDLWISWEEGMKVFEELLLDADWSINAGSWMW-L 400 Query: 397 STGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSW------LDKN 450 S + +F + P G+R DP G +IR +LP L P +YI+ P + + K Sbjct: 401 SCSSFFQQFFHCYCPVGFGRRTDPNGDYIRRYLPVLRGFPAKYIYDPWNAPEGIQKVAKC 460 Query: 451 DLSLNYPLPIVDHKKA 466 + +NYP P+V+H +A Sbjct: 461 LIGVNYPKPMVNHAEA 476 >gi|45383636|ref|NP_989576.1| cryptochrome-1 [Gallus gallus] gi|82104700|sp|Q8QG61|CRY1_CHICK RecName: Full=Cryptochrome-1 gi|19550963|gb|AAK61385.1| cryptochrome 1 [Gallus gallus] Length = 621 Score = 130 bits (328), Expect = 4e-28, Method: Compositional matrix adjust. Identities = 137/495 (27%), Positives = 203/495 (41%), Gaps = 54/495 (10%) Query: 7 MSVHLV-WLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASL 65 M V+ V W R LR+ DN AL +D V V+I P + + F+ L Sbjct: 1 MGVNAVHWFRKGLRLHDNPALRECIRGADT-VRCVYILDPWFAGSSNVGINRWRFLLQCL 59 Query: 66 LQVQ---KSLSQKGIVFQYHQCSNFDDSI-EWLDSYCLQQRVTKLFYNRQYEINEVRRDK 121 + + L+ + V + F EW + KL E RD Sbjct: 60 EDLDANLRKLNSRLFVIRGQPADVFPRLFKEW--------SIAKLSIEYDSEPFGKERDA 111 Query: 122 LLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLV-QADLRSLPVP 180 ++K + S L L+ +++ P Q L+ + + +PV Sbjct: 112 AIKKLASEAGVEVIVRISHTL---YDLDKIIELNGGQPPLTYKRFQTLISRMEPLEMPVE 168 Query: 181 AI------RLTGPVTPS-----NIPRFFDYPFQA---IDPMFPIGEQNALHILRKFCKEK 226 I + T PV+ +P + F ++P GE AL L + + K Sbjct: 169 TITPEVMQKCTTPVSDDHDEKYGVPSLEELGFDTDGLPSAVWPGGETEALTRLERHLERK 228 Query: 227 VYYYVEQRDIPAIQGTS------QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFS 280 + V + P + S LSPYL G LS R + +L + + + K S S Sbjct: 229 AW--VANFERPRMNANSLLASPTGLSPYLRFGCLSCRLFYFKLTDLYKKVK-KNSSPPLS 285 Query: 281 WLNELIWREFYRHLMAFYPSV--CMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDA 338 +L+WREF+ P G P +I W+K+ L W +G TGFP IDA Sbjct: 286 LYGQLLWREFFYTAATNNPRFDKMEGNPIC---VQIPWDKNPEALAKWAEGRTGFPWIDA 342 Query: 339 AMRQLNTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAAS 397 M QL GW+H+ R A FL + DL + W G + F LLD D + N G W W S Sbjct: 343 IMTQLRQEGWIHHLARHAVACFLTRGDLWISWEEGMKVFEELLLDADWSVNAGSWMW-LS 401 Query: 398 TGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIH----APHSW--LDKND 451 + +F + P G+R DP G +IR +LP L P +YI+ AP S K Sbjct: 402 CSSFFQQFFHCYCPVGFGRRTDPNGDYIRRYLPVLRGFPAKYIYDPWNAPESVQKAAKCV 461 Query: 452 LSLNYPLPIVDHKKA 466 + +NYP P+V+H +A Sbjct: 462 IGVNYPKPMVNHAEA 476 >gi|73969274|ref|XP_862802.1| PREDICTED: similar to cryptochrome 1 (photolyase-like) isoform 3 [Canis familiaris] Length = 613 Score = 130 bits (327), Expect = 4e-28, Method: Compositional matrix adjust. Identities = 135/496 (27%), Positives = 203/496 (40%), Gaps = 56/496 (11%) Query: 7 MSVHLV-WLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASL 65 M V+ V W R LR+ DN AL +D + V+I P + + F+ L Sbjct: 1 MGVNAVHWFRKGLRLHDNPALKECIQGADT-IRCVYILDPWFAGSSNVGINRWRFLLQCL 59 Query: 66 LQVQ---KSLSQKGIVFQYHQCSNFDDSI-EWLDSYCLQQRVTKLFYNRQYEINEVRRDK 121 + + L+ + V + F EW +TKL E RD Sbjct: 60 EDLDANLRKLNSRLFVIRGQPADVFPRLFKEW--------NITKLSIEYDSEPFGKERDA 111 Query: 122 LLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPA 181 ++K + S L L+ +++ P Q L+ + + L +P Sbjct: 112 AIKKLATEAGVEVIVRISHTL---YDLDKIIELNGGQPPLTYKRFQTLI-SKMEPLEIPV 167 Query: 182 IRLTGPV-----TP--------SNIPRFFDYPFQAI---DPMFPIGEQNALHILRKFCKE 225 +T V TP +P + F ++P GE AL L + + Sbjct: 168 ETITSEVVEKCTTPLSDDHDEKYGVPSLEELGFDTDGLPSAVWPGGETEALTRLERHLER 227 Query: 226 KVYYYVEQRDIPAIQGTS------QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAF 279 K + V + P + S LSPYL G LS R + +L + + + K S Sbjct: 228 KAW--VANFERPRMNANSLLASPTGLSPYLRFGCLSCRLFYFKLTDLYKKV-KKNSSPPL 284 Query: 280 SWLNELIWREFYRHLMAFYPSV--CMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIID 337 S +L+WREF+ P G P +I W+K+ L W +G TGFP ID Sbjct: 285 SLYGQLLWREFFYTAATNNPRFDKMEGNPIC---VQIPWDKNPEALAKWAEGRTGFPWID 341 Query: 338 AAMRQLNTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAA 396 A M QL GW+H+ R A FL + DL + W G + F LLD D + N G W W Sbjct: 342 AIMTQLRQEGWIHHLARHAVACFLTRGDLWISWEEGMKVFEELLLDADWSINAGSWMW-L 400 Query: 397 STGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSW------LDKN 450 S + +F + P G+R DP G +IR +LP L P +YI+ P + + K Sbjct: 401 SCSSFFQQFFHCYCPVGFGRRTDPNGDYIRRYLPVLRGFPAKYIYDPWNAPEGIQKVAKC 460 Query: 451 DLSLNYPLPIVDHKKA 466 + +NYP P+V+H +A Sbjct: 461 LIGVNYPKPMVNHAEA 476 >gi|254525619|ref|ZP_05137671.1| deoxyribodipyrimidine photolyase [Prochlorococcus marinus str. MIT 9202] gi|221537043|gb|EEE39496.1| deoxyribodipyrimidine photolyase [Prochlorococcus marinus str. MIT 9202] Length = 497 Score = 130 bits (327), Expect = 4e-28, Method: Compositional matrix adjust. Identities = 122/476 (25%), Positives = 204/476 (42%), Gaps = 49/476 (10%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 ++++W + DLRI +N+AL + ++D ++ +FI E W Q S RQ F S++ + Sbjct: 4 INILWFKKDLRIDENEALNESLKDND--ILPIFIFEIEVWNQKTHSRRQWQFCKESIIDL 61 Query: 69 QKSLSQKG---IVFQYHQCSNFDD---SIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKL 122 + SL + G I+ + F++ + Y Q+ + Y R E+ +K Sbjct: 62 RNSLKEIGQPLIIRTGNVIKIFEEISSKFNIVGIYSHQETGDWVTYKRDQEVKLWAANK- 120 Query: 123 LEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAI 182 ++I + F S+ + ++K + L++ LR P+ Sbjct: 121 -------KIIWREF------LQFSVFRGNINRDDWSKNWKKNTERELIKRPLRINPIDFD 167 Query: 183 RLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIP--AIQ 240 G + I F + G + + ++ F EK+ Y + P + Sbjct: 168 --IGKIPDEKI---FSFKKDECKGSLKGGRKKGIERMQYFFNEKLNSYSKNISSPEKSFD 222 Query: 241 GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPS 300 S+LSPY+S G +S LKE F + + + + + L W + + P Sbjct: 223 SCSRLSPYISWGCIS-------LKEIFYKANLHKNNNSIMFKSRLTWHCHFIQKLESEPE 275 Query: 301 VCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASF 360 + F P+ + K++ LL W QG TG+P IDA MR LN GW++ R+R + SF Sbjct: 276 LEF-HDFHPYFKNSR-TKNTELLLLWSQGNTGYPFIDACMRSLNFNGWINFRMRAMLMSF 333 Query: 361 LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGW-QWAASTGNDSVPYFRIFNPTIQGKRFD 419 +L + W+ ++ +D + + W Q +G S+ RI+NP QGK D Sbjct: 334 ASYNLWLPWQDSGSELANKFVDYEPGIH---WNQCQMQSGTTSINTNRIYNPIKQGKDHD 390 Query: 420 PQGTFIRHWLPELNNVPTQYIHAPHSWL-----DKNDLSLNYPLPIVDHKKACHHT 470 P G FI+ W+PEL N+ +IH P WL L Y PIVD K Sbjct: 391 PDGEFIKKWVPELKNIAIDFIHEP--WLLGKFNCDEYAKLQYNKPIVDISKTSREA 444 >gi|326912139|ref|XP_003202411.1| PREDICTED: cryptochrome-1 [Meleagris gallopavo] Length = 611 Score = 130 bits (327), Expect = 5e-28, Method: Compositional matrix adjust. Identities = 94/275 (34%), Positives = 132/275 (48%), Gaps = 22/275 (8%) Query: 207 MFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS------QLSPYLSIGVLSPRQCW 260 ++P GE AL L + + K + V + P + S LSPYL G LS R + Sbjct: 199 VWPGGETEALTRLERHLERKAW--VANFERPRMNANSLLASPTGLSPYLRFGCLSCRLFY 256 Query: 261 NRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSV--CMGKPFIPWTEKIEWNK 318 +L + + + K S S +L+WREF+ P G P +I W+K Sbjct: 257 FKLTDLYKKVK-KNSSPPLSLYGQLLWREFFYTAATNNPRFDKMEGNPIC---VQIPWDK 312 Query: 319 DSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFM 377 + L W +G TGFP IDA M QL GW+H+ R A FL + DL + W G + F Sbjct: 313 NPEALAKWAEGRTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWISWEEGMKVFE 372 Query: 378 SQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPT 437 LLD D + N G W W S + +F + P G+R DP G +IR +LP L P Sbjct: 373 ELLLDADWSVNAGSWMW-LSCSSFFQQFFHCYCPVGFGRRTDPNGDYIRRYLPVLRGFPA 431 Query: 438 QYIH----APHSW--LDKNDLSLNYPLPIVDHKKA 466 +YI+ AP S K + +NYP P+V+H +A Sbjct: 432 KYIYDPWNAPESVQKAAKCVIGVNYPKPMVNHAEA 466 >gi|62955979|gb|AAY23345.1| antennal cryptochrome [Mamestra brassicae] Length = 548 Score = 130 bits (327), Expect = 5e-28, Method: Compositional matrix adjust. Identities = 128/511 (25%), Positives = 210/511 (41%), Gaps = 69/511 (13%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 ++W R+ LR+ DN +L++A VFI E + + ++ +L + Sbjct: 6 VLWFRHGLRLHDNPSLHSALEEKGFPFFPVFIFDGETAGTKVVGYNRMRYLLEALEDLDN 65 Query: 71 SLSQKG---IVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYE-INEVRRDKLLEKR 126 L + G I+ + F E + + +L + + E + R D + Sbjct: 66 QLKKHGGRLIMIKGKPNVVFRRLWE-------EFGIRRLCFEQDCEPVWRARDDSVKSAC 118 Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 + V+CK L P +++ + + + + + PV I TG Sbjct: 119 KEIGVVCKEHVSHTLWEPDTVIKANGGIPPLTY---QMFLHTVATIGDPPRPVSDIDFTG 175 Query: 187 PVTPSNIPRFFDYPFQAIDPM-------------------FPIGEQNALHILRKFCKEKV 227 V ++P F + F D + GE AL +++ + V Sbjct: 176 -VKFGSLPESFYHEFTVYDKTPKPEDLGVFLENEDIRMIRWVGGETTALKQMQQ--RLAV 232 Query: 228 YY-------YVEQRDIPAIQGTS-QLSPYLSIGVLSPRQCWNRLKEEFVDL---LIKPKS 276 Y Y+ P + G LSP L G LS R + +++ F + + +S Sbjct: 233 EYETFLRGSYLPTHGNPDLLGPPISLSPALRFGCLSVRSFYWSVQDLFRQVHQGRLATQS 292 Query: 277 GAFSWLNELIWREFYRHLMAFYPSV--CMGKPF---IPWTEKIEWNKDSHLLQAWKQGYT 331 + +LIWRE++ + P+ G P IPW E + LQ W +G T Sbjct: 293 ASHFITGQLIWREYFYTMSVNNPNYGQMAGNPICLDIPWKEP-----EGDELQRWVEGRT 347 Query: 332 GFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLL-VDWRIGEEYFMSQLLDGDLASNNG 390 GFP +DAAMRQL T GW+H+ R ASFL + L + W G +F+ LLD D + G Sbjct: 348 GFPFVDAAMRQLRTEGWLHHAARNTVASFLTRGTLWLSWEHGLNHFLKYLLDADWSVCAG 407 Query: 391 GWQWAASTGNDS-VPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDK 449 W W +S+ ++ + P G+R DP G ++R ++PEL +P QYI+ P W Sbjct: 408 NWMWVSSSAFEALLDSGECACPVRLGQRLDPSGEYVRRYVPELARMPVQYIYEP--WKAP 465 Query: 450 ND--------LSLNYPLPIVDHKKACHHTLN 472 D + +YP P+V+H A N Sbjct: 466 IDIQERATCIIGKDYPAPVVNHLVAAQRNKN 496 >gi|75048080|sp|Q8WP19|CRY1_MACFA RecName: Full=Cryptochrome-1 gi|17026058|dbj|BAB72089.1| cryptochrome 1 [Macaca fascicularis] Length = 586 Score = 130 bits (327), Expect = 5e-28, Method: Compositional matrix adjust. Identities = 134/496 (27%), Positives = 203/496 (40%), Gaps = 56/496 (11%) Query: 7 MSVHLV-WLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASL 65 M V+ V W R LR+ DN AL +D + V+I P + + F+ L Sbjct: 1 MGVNAVHWFRKGLRLHDNPALKECIQGADT-IRCVYILDPWFAGSSNVGINRWRFLLQCL 59 Query: 66 LQVQ---KSLSQKGIVFQYHQCSNFDDSI-EWLDSYCLQQRVTKLFYNRQYEINEVRRDK 121 + + L+ + V + F EW +TKL E RD Sbjct: 60 EDLDANLRKLNSRLFVIRGQPADVFPRLFKEW--------NITKLSIEYDSEPFGKERDA 111 Query: 122 LLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPA 181 ++K + S L L+ +++ P Q L+ + + L +P Sbjct: 112 AIKKLATEAGVEVIVRISHTL---YDLDKIIELNGGQPPLTYKRFQTLI-SKMEPLEIPV 167 Query: 182 IRLTGPV-----TP--------SNIPRFFDYPFQA---IDPMFPIGEQNALHILRKFCKE 225 +T V TP +P + F ++P GE AL L + + Sbjct: 168 ETITSEVIEKCTTPLSDDHDEKYGVPSLEELGFDTDGLSSAVWPGGETEALTRLERHLER 227 Query: 226 KVYYYVEQRDIPAIQGTS------QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAF 279 K + V + P + S LSPYL G LS R + +L + + + + S Sbjct: 228 KAW--VANFERPRMNANSLLASPTGLSPYLRFGCLSCRLFYFKLTDLYKKVK-RNSSPPL 284 Query: 280 SWLNELIWREFYRHLMAFYPSV--CMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIID 337 S +L+WREF+ P G P +I W+K+ L W +G TGFP ID Sbjct: 285 SLYGQLLWREFFYTAATNNPRFDKMEGNPIC---VQIPWDKNPEALAKWAEGRTGFPWID 341 Query: 338 AAMRQLNTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAA 396 A M QL GW+H+ R A FL + DL + W G + F LLD D + N G W W Sbjct: 342 AIMTQLRQEGWIHHLARHAVACFLTRGDLWISWEEGMKVFEELLLDADWSINAGSWMW-L 400 Query: 397 STGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSW------LDKN 450 S + +F + P G+R DP G +IR +LP L P +YI+ P + + K Sbjct: 401 SCSSFFQQFFHCYCPVGFGRRTDPNGDYIRRYLPVLRGFPAKYIYDPWNAPEGIQKVAKC 460 Query: 451 DLSLNYPLPIVDHKKA 466 + +NYP P+V+H +A Sbjct: 461 LIGINYPKPMVNHAEA 476 >gi|134032019|ref|NP_001076794.1| cryptochrome 2 [Tribolium castaneum] gi|133754349|gb|ABO38438.1| cryptochrome 2 [Tribolium castaneum] gi|270008089|gb|EFA04537.1| cryptochrome 2 [Tribolium castaneum] Length = 535 Score = 130 bits (327), Expect = 5e-28, Method: Compositional matrix adjust. Identities = 93/279 (33%), Positives = 135/279 (48%), Gaps = 25/279 (8%) Query: 204 IDPMFPIGEQNALHILRKFCKEKVYY-------YVEQRDIPAIQGTSQLSPYLSIGVLSP 256 + P++ GE AL L + + K + Q +P+ G LSPYL G LS Sbjct: 220 LPPVWQGGESEALARLERHLERKAWVASFGRPKMTPQSLLPSQTG---LSPYLRFGCLST 276 Query: 257 RQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSV--CMGKPFIPWTEKI 314 R + +L + + IK S +L+WREF+ P+ +G P +I Sbjct: 277 RLFYYQLTDLYKK--IKKAFPPLSLHGQLLWREFFYCAATKNPNFDKMIGNPIC---VQI 331 Query: 315 EWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK-DLLVDWRIGE 373 W+K++ L W G TGFP IDA M QL GW+H+ R A FL + DL + W G Sbjct: 332 PWDKNAEALAKWANGQTGFPWIDAIMTQLREEGWIHHLARHAVACFLTRGDLWLSWEEGM 391 Query: 374 EYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELN 433 + F LLD D + N G W W S + +F + P G++ DP G +IR +LP L Sbjct: 392 KVFEELLLDADWSVNAGMWMW-LSCSSFFQQFFHCYCPIKFGRKADPNGDYIRKYLPVLK 450 Query: 434 NVPTQYIHAPHSWLD------KNDLSLNYPLPIVDHKKA 466 N+P+QYIH P + + K + +Y LP+V+H A Sbjct: 451 NMPSQYIHEPWTAPEQVQRAAKCIIGKDYSLPMVNHAAA 489 >gi|224095373|ref|XP_002196554.1| PREDICTED: cryptochrome 1 (photolyase-like) [Taeniopygia guttata] Length = 588 Score = 130 bits (327), Expect = 5e-28, Method: Compositional matrix adjust. Identities = 94/275 (34%), Positives = 132/275 (48%), Gaps = 22/275 (8%) Query: 207 MFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS------QLSPYLSIGVLSPRQCW 260 ++P GE AL L + + K + V + P + S LSPYL G LS R + Sbjct: 177 VWPGGETEALTRLERHLERKAW--VANFERPRMNANSLLASPTGLSPYLRFGCLSCRLFY 234 Query: 261 NRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSV--CMGKPFIPWTEKIEWNK 318 +L + + + K S S +L+WREF+ P G P +I W+K Sbjct: 235 FKLTDLYKKVK-KNSSPPLSLYGQLLWREFFYTAATNNPRFDKMEGNPIC---VQIPWDK 290 Query: 319 DSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFM 377 + L W +G TGFP IDA M QL GW+H+ R A FL + DL + W G + F Sbjct: 291 NPEALAKWAEGRTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWISWEEGMKVFE 350 Query: 378 SQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPT 437 LLD D + N G W W S + +F + P G+R DP G +IR +LP L P Sbjct: 351 ELLLDADWSVNAGSWMW-LSCSSFFQQFFHCYCPVGFGRRTDPNGDYIRRYLPVLRGFPA 409 Query: 438 QYIH----APHSW--LDKNDLSLNYPLPIVDHKKA 466 +YI+ AP S K + +NYP P+V+H +A Sbjct: 410 KYIYDPWNAPESIQKAAKCIIGVNYPKPMVNHAEA 444 >gi|89075135|ref|ZP_01161571.1| deoxyribodipyrimidine photolyase [Photobacterium sp. SKA34] gi|89049089|gb|EAR54655.1| deoxyribodipyrimidine photolyase [Photobacterium sp. SKA34] Length = 443 Score = 130 bits (327), Expect = 5e-28, Method: Compositional matrix adjust. Identities = 128/449 (28%), Positives = 207/449 (46%), Gaps = 55/449 (12%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQ----WRQHGISARQSHFIYASLL 66 L W NDLR+ DN L+ A + D+ + F+ +Q ++ + + F+ +L Sbjct: 6 LYWFTNDLRLHDNPILHQAYEHCDSLLCVYFMEPKKQQFNRYQLISVGEIRHRFLLQALQ 65 Query: 67 QVQKSLS---QKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLL 123 +Q +L+ Q+ +V Q + IE Q + ++ +R E ++ L Sbjct: 66 ALQSNLATLGQRLLVMQADPMVSMPVLIE-------QYGINLIYRSRHCGWYEQQQWCYL 118 Query: 124 EKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIR 183 ++ H + D L + L M K Y+ FRK + QN+ S P+ Sbjct: 119 KQCYPHLRFVE-VDTHTLYSQDQLPFPLLDMPKSYSKFRKQIEQNVT----VSSPILVPD 173 Query: 184 LTGPVTPSNIPRFFDYPFQAI---DPMFPIGEQNA--LHILRKFCKEKVYYYVEQRDIPA 238 P + D I D + G +NA +H+ + F Y E R+ A Sbjct: 174 YLPPQPNVFCSEYLDIRHVHISDNDQVEWHGGENAALMHLQQYFSSRLPSSYKETRN--A 231 Query: 239 IQG---TSQLSPYLSIGVLSPRQCWNRLK--EEFVDLLIKPKSGAFSWLN-ELIWREFYR 292 I+G +++ SP+L+ G +S + RL+ E++ K K+ + W+ EL+WREF++ Sbjct: 232 IEGWNNSTKFSPWLACGAISAKMIMARLQDYEKY-----KEKNSSTYWIFFELLWREFFQ 286 Query: 293 HLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQA--------WKQGYTGFPIIDAAMRQLN 344 + + +G+ + ++ LL + W +G T +PI++A M+QLN Sbjct: 287 -----WHAHAVGRDLY----RFSGVQNKRLLNSFYPTRFKQWCEGSTPYPIVNAFMKQLN 337 Query: 345 TIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVP 404 G+M NR R I AS LV +L VDWR G YF QL+D D+A+N G WQ+ A G DS Sbjct: 338 QTGYMSNRGRQIVASCLVNELSVDWRYGAAYFEQQLIDHDVAANWGNWQYIAGVGTDSRE 397 Query: 405 YFRIFNPTIQGKRFDPQGTFIRHWLPELN 433 R F+ Q + FDP FIRHW + N Sbjct: 398 K-RWFDLEKQTRIFDPNHHFIRHWRGDEN 425 >gi|81864807|sp|Q70AD6|CRY1_SPAJD RecName: Full=Cryptochrome-1 gi|44843612|emb|CAE54425.1| sCRY1 protein [Spalax judaei] Length = 587 Score = 130 bits (326), Expect = 6e-28, Method: Compositional matrix adjust. Identities = 134/496 (27%), Positives = 203/496 (40%), Gaps = 56/496 (11%) Query: 7 MSVHLV-WLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASL 65 M V+ V W R LR+ DN AL +D + V+I P + + F+ L Sbjct: 1 MGVNAVHWFRKGLRLHDNPALKECIQGADT-IRCVYILDPWFAGSSNVGINRWRFLLQCL 59 Query: 66 LQVQ---KSLSQKGIVFQYHQCSNFDDSI-EWLDSYCLQQRVTKLFYNRQYEINEVRRDK 121 + + L+ + +V + F EW +TKL E RD Sbjct: 60 EDLDANLRKLNSRLLVIRGQPADVFPRLFKEW--------NITKLSIEYDSEPFGKERDA 111 Query: 122 LLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPA 181 ++K + S L L+ +++ P Q L+ + + L +P Sbjct: 112 AIKKLATEAGVEVIVRISHTL---YDLDKIIELNGGQPPLTYKRFQTLI-SKMEPLEIPV 167 Query: 182 IRLTGPV-----TP--------SNIPRFFDYPFQA---IDPMFPIGEQNALHILRKFCKE 225 +T V TP +P + F ++P GE AL L + + Sbjct: 168 ETITSEVIEKCTTPLSDDHDEKYGVPSLEELGFDTDGLSSAVWPGGETEALTRLERHLER 227 Query: 226 KVYYYVEQRDIPAIQGTS------QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAF 279 + + V + P + S LSPYL G LS R + +L + + + K S Sbjct: 228 RAW--VANFERPRMNANSLLASPTGLSPYLRFGCLSCRLFYFKLTDLYKKVK-KNSSPPL 284 Query: 280 SWLNELIWREFYRHLMAFYPSV--CMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIID 337 S +L+WREF+ P G P +I W+K+ L W +G TGFP ID Sbjct: 285 SLYGQLLWREFFYTAATNNPRFDKMEGNPI---CVQIPWDKNPEALAKWAEGRTGFPWID 341 Query: 338 AAMRQLNTIGWMHNRLRMITASFLV-KDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAA 396 A M QL GW+H+ R A FL DL + W G + F LLD D + N G W W Sbjct: 342 AIMTQLRQEGWIHHLARHAVACFLTGSDLWISWEEGMKVFEELLLDADWSINAGSWMW-L 400 Query: 397 STGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSW------LDKN 450 S + +F + P G+R DP G +IR +LP L P +YI+ P + + K Sbjct: 401 SCSSFFQQFFHCYCPVGFGRRTDPNGDYIRRYLPVLRGFPAKYIYDPWNAPEGIQKVAKC 460 Query: 451 DLSLNYPLPIVDHKKA 466 + +NYP P+V+H +A Sbjct: 461 LIGVNYPKPMVNHAEA 476 >gi|332292004|ref|YP_004430613.1| cryptochrome, DASH family [Krokinobacter diaphorus 4H-3-7-5] gi|332170090|gb|AEE19345.1| cryptochrome, DASH family [Krokinobacter diaphorus 4H-3-7-5] Length = 432 Score = 130 bits (326), Expect = 6e-28, Method: Compositional matrix adjust. Identities = 116/444 (26%), Positives = 200/444 (45%), Gaps = 40/444 (9%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQS-----HFI 61 M LVW RN+LR DN +L A S +VI ++ P Q++ +++ F+ Sbjct: 1 MDTALVWFRNNLRTQDNSSLTHAIA-SGKRVIGLYSFDPRQFQIGDFGFKKTEKYRAQFL 59 Query: 62 YASLLQVQKSLSQKGI---VFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVR 118 ++ ++K+L+ I V H D I+ Q V++++ +++ E Sbjct: 60 IETVQNLKKNLNDLNITLIVTHEHPEVTIPDLID-------QHDVSEIYSQKEWTREENE 112 Query: 119 RDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRK-----ALIQNLVQAD 173 +E+++ + +D + P + N + +V+T FRK + +Q L Q Sbjct: 113 VTIAVEEKINNAKHYTHYDQFLFHPEDNPFNSFGDIPQVFTQFRKKCEKESTVQRL-QEK 171 Query: 174 LRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFP--IGEQNALHILRKF--CKEKVYY 229 +++LP + P+ D + FP GE A + L + +K+ Y Sbjct: 172 IKTLPSKNLLDKESSIPNLQELGLDTFTKDHRSAFPWNGGEDEAWNRLNNYFWNTKKLQY 231 Query: 230 YVEQRD-IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWR 288 Y + R+ + +S+LS +L+ G +S RQ + +K+ + I + + ELIWR Sbjct: 232 YKKTRNGLVGEDYSSKLSAWLANGSISARQIYWEVKK--FEKEIISNQDTYWLIFELIWR 289 Query: 289 EFYRHLMAFYPSVCMGKPFIPWT----EKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLN 344 ++++ Y S+ G + +W ++ + W G T + ++A M +L Sbjct: 290 DYFK-----YVSLKHGNDLFKIGGILHKNYDWKRNDKAQREWIHGNTTYDFVNANMIELK 344 Query: 345 TIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVP 404 GWM NR R ASF K+ DWR+G YF S L+D D+ SN W + A GND P Sbjct: 345 ETGWMSNRGRQNVASFWAKEQQQDWRVGAAYFESVLIDYDVHSNWANWMYNAGVGND--P 402 Query: 405 YFRIFNPTIQGKRFDPQGTFIRHW 428 R FN Q + +D G F+R W Sbjct: 403 RDRKFNIKRQQEMYDGNGKFVRLW 426 >gi|126666531|ref|ZP_01737509.1| deoxyribodipyrimidine photolyase, putative [Marinobacter sp. ELB17] gi|126628919|gb|EAZ99538.1| deoxyribodipyrimidine photolyase, putative [Marinobacter sp. ELB17] Length = 500 Score = 130 bits (326), Expect = 6e-28, Method: Compositional matrix adjust. Identities = 138/491 (28%), Positives = 217/491 (44%), Gaps = 49/491 (9%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASL--- 65 ++ VW + DLR+ D+ L AACH + V+ +++ P Q + +S R FI S+ Sbjct: 8 INAVWFKRDLRLADHAPLQAACH-AGLPVMLLYMVEPSQRQNPHLSLRHWRFIMKSISDM 66 Query: 66 -LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVT--KLFYNRQY-EINEVRRDK 121 LQ+ ++ + G+ + +C IE L LQQR + LF + + + + RD+ Sbjct: 67 NLQLNRAGCEAGVALVHGEC------IESLTR--LQQRYSLHTLFSHEETGDASTFERDQ 118 Query: 122 LLEKRLQHR-VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVP 180 + Q + V + F + ++ + N + + A QN ADLR L V Sbjct: 119 QVAHWCQQQDVNWQEFTTNAVI--RGVFNRD-GWDRHWQQVMGAPQQN---ADLRQLRV- 171 Query: 181 AIRLTGPVTPSNIPRFFD-YPFQAIDPMFPIG-EQNALHILRKFCKEKVYYYVEQRDIPA 238 + P+ +P + +Q + F G E A + F + +Y P Sbjct: 172 -------IRPTALPDWQPPSEWQQANSQFQTGGELAANQWMESFFNARGRFYSGSVSSPI 224 Query: 239 IQGT--SQLSPYLSIGVLSPRQCW-----NRLKEEFVDLLIKPKSGAFSWLNELIWREFY 291 T S+LSPYL+ G +S RQ + NR K + D ++ + W I ++F Sbjct: 225 ASRTFCSRLSPYLAFGNISLRQAYQQYRANRQKAGW-DRSLRAFASRLHWHCHFI-QKFE 282 Query: 292 RHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHN 351 V G P+ N D L AW+ G TG+P++DA MR L G+++ Sbjct: 283 SECAMEQRPVNRGYLTYPYRTDDGVNAD---LAAWQDGRTGYPLVDACMRCLQATGYINF 339 Query: 352 RLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNP 411 R+R + SFL L +DW+ G + LD + + +Q A G + RI+NP Sbjct: 340 RMRAMLVSFLCHLLNIDWQRGVHHLARLFLDYEPGIHYSQFQMQA--GLTGINTIRIYNP 397 Query: 412 TIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTL 471 +Q + DPQGTFIR W+PEL +P +H P WL + L I H A L Sbjct: 398 VLQSQEQDPQGTFIRQWVPELAELPDTLLHQP--WLLTPMEEQMFDLQISQHYPAPLFEL 455 Query: 472 NQYYAAKKQSL 482 YAA + L Sbjct: 456 APAYAAARDRL 466 >gi|322698418|gb|EFY90188.1| cryptochrome-2 [Metarhizium acridum CQMa 102] Length = 604 Score = 130 bits (326), Expect = 6e-28, Method: Compositional matrix adjust. Identities = 103/310 (33%), Positives = 142/310 (45%), Gaps = 40/310 (12%) Query: 184 LTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYY--YVEQRDIPA--- 238 + GP I + F A + GE AL L + + K Y + + + PA Sbjct: 204 IAGPKGDFAIETLEELGFPAATTPYRGGESIALKDLAEIIENKKYTATFEKPKTSPAQFE 263 Query: 239 IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFY 298 Q T+ LSP+L G LS R+ + R+++ + S +LI+R+ Y A Sbjct: 264 PQSTTLLSPFLHFGALSVREFYWRVQDVVEAYGKGASTPPASLTGQLIFRDMYFAAQAAV 323 Query: 299 PSV---CMGKP---FIPW-------------TEKIEWNKD--SHLLQAWKQGYTGFPIID 337 + G P FIPW T+K + + D Q WK+G TGFP ID Sbjct: 324 GAKFTQTAGNPYCRFIPWHLPSERDSQTGLVTDKYKVDSDDAEKWFQRWKRGVTGFPWID 383 Query: 338 AAMRQLNTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAA 396 A MRQL GWMH+ R A FL + VDW G E F LLD + A N G WQW + Sbjct: 384 ALMRQLVHTGWMHHLGRHSVACFLTRGGCYVDWERGAEVFEVHLLDHEPACNAGNWQWLS 443 Query: 397 STGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNY 456 T S YFR ++P G+++D G IR W+PEL N+ ++YI+ P + Sbjct: 444 CTAFFSQ-YFRCYSPVSFGQKWDKNGDLIRKWVPELKNLDSKYIYEP------------W 490 Query: 457 PLPIVDHKKA 466 PI D KKA Sbjct: 491 KAPIQDQKKA 500 >gi|89097604|ref|ZP_01170493.1| Deoxyribodipyrimidine photolyase [Bacillus sp. NRRL B-14911] gi|89087900|gb|EAR67012.1| Deoxyribodipyrimidine photolyase [Bacillus sp. NRRL B-14911] Length = 474 Score = 130 bits (326), Expect = 7e-28, Method: Compositional matrix adjust. Identities = 132/493 (26%), Positives = 208/493 (42%), Gaps = 67/493 (13%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 +++VW R DLRI D++ L AC +++ +VI ++IA P R+ +S R F L Q+ Sbjct: 1 MNIVWFRKDLRIHDHRPLAEACASAE-EVIPLYIAEPLSGRKE-VSRRHIQFAAEGLEQL 58 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128 + L G Q + D E L Y LF++ +Y+ + D+L + + Sbjct: 59 DEGLRGLGGRLFAAQGTIIDILEELLKRYG----DFSLFFHLEYDTD---TDRLAAEWMG 111 Query: 129 HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188 K PPG L+ K + FRK +++++ + P A+R+ Sbjct: 112 ----SKGLPFYPFHPPGQ-----LEKPKSKSRFRKLWQESMLEE--LTDPPAAVRV---- 156 Query: 189 TPSNIPRFFDYPFQ----------AIDPMFPIGEQNALHILRKFCKEKVYYYVE--QRDI 236 P +P F + Q AI GE+ + L F E++ Y + Q+ + Sbjct: 157 -PEKVPDFLNLSVQKALGMKVKGEAIRFGQNGGEKRGIETLEFFIGEQLANYEKNYQKPL 215 Query: 237 PAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMA 296 + +S+LSPYL+ G +SPR ++ ++ + K + L Sbjct: 216 ASSFSSSRLSPYLAYGNISPRLAYHEAAKKAENCTETEK----------------QQLSL 259 Query: 297 FYPSVCMGKPFIPWTEK-IEWNK---------DSHLLQAWKQGYTGFPIIDAAMRQLNTI 346 F + + W EK + N D+ LL+ W+ G TG P +DA+MR L Sbjct: 260 FQSKLLERSEALQWQEKETQANAADSNSARAHDAELLEKWRTGNTGIPSVDASMRCLRKT 319 Query: 347 GWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYF 406 GW++ R + A F LL+DW LD + A + + G Sbjct: 320 GWLNYSSRRMLAGFACNILLLDWEKAALELALLFLDHEPAVHMK--EMGILAGKSGSKTV 377 Query: 407 RIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKA 466 +I +P GK D G+FIR ++PEL +V YIH P WL L YP PI D +KA Sbjct: 378 KIIDPVKWGKELDTDGSFIRRYVPELKDVDAAYIHEP--WLYPGFFQLGYPAPICDVRKA 435 Query: 467 CHHTLNQYYAAKK 479 Q KK Sbjct: 436 IKQAKRQIEDQKK 448 >gi|55251265|emb|CAH69046.1| cryptochrome 1a [Danio rerio] Length = 556 Score = 130 bits (326), Expect = 7e-28, Method: Compositional matrix adjust. Identities = 103/350 (29%), Positives = 157/350 (44%), Gaps = 39/350 (11%) Query: 148 LNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT----GPVTPS---------NIP 194 L+ +++ +P Q L+ + + ++ PA +T GP T +P Sbjct: 135 LDKIIELNGGQSPLTYKRFQTLI-SRMEAVETPAETITAEVMGPCTTPLSDDHDEKFGVP 193 Query: 195 RFFDYPFQA---IDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS------QL 245 + F ++P GE AL L + + K + V + P + S L Sbjct: 194 SLEELGFDTEGLSSAVWPGGETEALTRLERHLERKAW--VANFERPRMNANSLLASPTGL 251 Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSV--CM 303 SPYL G LS R + +L + + + K S S +L+WREF+ P Sbjct: 252 SPYLRFGCLSCRLFYFKLTDLYRKVK-KNSSPPLSLYGQLLWREFFYTAATNNPRFDKME 310 Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363 G P +I W+K+ L W +G TGFP IDA M QL GW+H+ R A FL + Sbjct: 311 GNPIC---VQIPWDKNPEALAKWAEGRTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTR 367 Query: 364 -DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQG 422 DL + W G + F LLD D + N G W W S + +F + P G+R DP G Sbjct: 368 GDLWISWEEGMKVFEELLLDADWSVNAGSWMW-LSCSSFFQQFFHCYCPVSFGRRTDPNG 426 Query: 423 TFIRHWLPELNNVPTQYIHAPHSWLD------KNDLSLNYPLPIVDHKKA 466 +IR +LP L P +YI+ P + + K + ++YP+P+V H +A Sbjct: 427 DYIRRYLPVLRGFPAKYIYDPWNAPESVQKAAKCIIGVHYPMPMVHHAEA 476 >gi|45383642|ref|NP_989575.1| cryptochrome-2 [Gallus gallus] gi|19550965|gb|AAK61386.1| cryptochrome 2 [Gallus gallus] Length = 582 Score = 130 bits (326), Expect = 7e-28, Method: Compositional matrix adjust. Identities = 132/492 (26%), Positives = 207/492 (42%), Gaps = 55/492 (11%) Query: 8 SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67 SVH W R LR+ DN AL AA + A + ++I P + + F+ SL Sbjct: 14 SVH--WFRRGLRLHDNPALQAALRGA-ASLRCIYILDPWFAASSAVGINRWRFLLQSLED 70 Query: 68 VQKSLSQ---KGIVFQYHQCSNFDDSI-EWLDSYCLQQRVTKLFYNRQYEINEVRRDKLL 123 + SL + + V + F EW VT+L + E RD + Sbjct: 71 LDNSLRKLNSRLFVVRGQPTDVFPRLFKEW--------GVTRLTFEYDSEPFGKERDAAI 122 Query: 124 EKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLV-QADLRSLPVPAI 182 K + + ++S L L+ +++ P Q ++ + +L PV +I Sbjct: 123 IKLAKEAGVEVVIENSHTL---YDLDRIIELNGNKPPLTYKRFQAIISRMELPKKPVSSI 179 Query: 183 RLTGPVTPS-----------NIPRF--FDYPFQAIDP-MFPIGEQNALHILRKFCKEKVY 228 T +P +P + P ++ GE AL L K + K + Sbjct: 180 VSQQMETCKVDIQENHDDVYGVPSLEELGFPTDGLAPAVWQGGETEALARLDKHLERKAW 239 Query: 229 YYVEQRDIPAIQGTS------QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWL 282 V + P + S LSPYL G LS R + RL E + + + + S Sbjct: 240 --VANYERPRMNANSLLASPTGLSPYLRFGCLSCRLFYYRLWELYKKVK-RNSTPPLSLY 296 Query: 283 NELIWREFYRHLMAFYPSV--CMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAM 340 +L+WREF+ P G P +I W+K+ L W +G TGFP IDA M Sbjct: 297 GQLLWREFFYTAATNNPKFDRMEGNPIC---IQIPWDKNPEALAKWAEGKTGFPWIDAIM 353 Query: 341 RQLNTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTG 399 QL GW+H+ R A FL + DL + W G F LLD D + N G W W + + Sbjct: 354 TQLRQEGWIHHLARHAVACFLTRGDLWISWESGVRVFDELLLDADFSVNAGSWMWLSCSA 413 Query: 400 NDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLD------KNDLS 453 +F + P G+R DP G +++ +LP+L P++YI+ P + + K + Sbjct: 414 FFQQ-FFHCYCPVGFGRRTDPSGDYVKRYLPKLKGFPSRYIYEPWNAPESVQKAAKCIIG 472 Query: 454 LNYPLPIVDHKK 465 ++YP P+V+H + Sbjct: 473 VDYPKPMVNHAE 484 >gi|224003307|ref|XP_002291325.1| Cryptochrome/Photolyase family 3 [Thalassiosira pseudonana CCMP1335] gi|220973101|gb|EED91432.1| Cryptochrome/Photolyase family 3 [Thalassiosira pseudonana CCMP1335] Length = 571 Score = 129 bits (325), Expect = 7e-28, Method: Compositional matrix adjust. Identities = 91/271 (33%), Positives = 138/271 (50%), Gaps = 29/271 (10%) Query: 211 GEQNALHILRKFC--KEKVYYYVEQRD-IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEF 267 GE AL ++ + K+ + Y + R+ + +++ +P+L++G +SPR R + Sbjct: 252 GETFALRRVKDYIWDKDLLKLYFDTRNGMIGSDYSTKFAPWLALGNVSPRYI-ARECSRY 310 Query: 268 VDLLIKPKSGAFSWLNELIWREFYRHLM------AFYPSVCMGKPFIPWTEKIEWNKDSH 321 + ++ KS + L EL+ R+ ++ FY + +GK + +W D Sbjct: 311 EEQRVQNKSTYWVVL-ELLIRDHFKFFAKKHGDKVFYLTGNIGKQ---RGSERKWGMDRK 366 Query: 322 LLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLL 381 +QAW+ G TGFP++DA MR+L G+M NR R ASFL DL +DWR G EYF LL Sbjct: 367 KIQAWQDGMTGFPLVDANMRELAATGFMSNRGRQNVASFLTIDLNIDWRYGGEYFEETLL 426 Query: 382 DGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIH 441 D D+ SN G W AA + F I Q K +D G ++R W PEL NVP ++IH Sbjct: 427 DYDVHSNWGNWCSAAGMTGGRLNRFNIVK---QSKDYDFGGEYVRLWCPELKNVPDKHIH 483 Query: 442 APHSWLDKNDL----------SLNYPLPIVD 462 +P W ++ +YP PIVD Sbjct: 484 SP--WEMSGEMMEECGVKIGHGGDYPSPIVD 512 >gi|118572251|sp|Q8QG60|CRY2_CHICK RecName: Full=Cryptochrome-2 Length = 582 Score = 129 bits (325), Expect = 7e-28, Method: Compositional matrix adjust. Identities = 132/492 (26%), Positives = 207/492 (42%), Gaps = 55/492 (11%) Query: 8 SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67 SVH W R LR+ DN AL AA + A + ++I P + + F+ SL Sbjct: 14 SVH--WFRRGLRLHDNPALQAALRGA-ASLRCIYILDPWFAASSAVGINRWRFLLQSLED 70 Query: 68 VQKSLSQ---KGIVFQYHQCSNFDDSI-EWLDSYCLQQRVTKLFYNRQYEINEVRRDKLL 123 + SL + + V + F EW VT+L + E RD + Sbjct: 71 LDNSLRKLNSRLFVVRGQPTDVFPRLFKEW--------GVTRLAFEYDSEPFGKERDAAI 122 Query: 124 EKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLV-QADLRSLPVPAI 182 K + + ++S L L+ +++ P Q ++ + +L PV +I Sbjct: 123 IKLAKEAGVEVVIENSHTL---YNLDRIIELNGNKPPLTYKRFQAIISRMELPKKPVSSI 179 Query: 183 RLTGPVTPS-----------NIPRF--FDYPFQAIDP-MFPIGEQNALHILRKFCKEKVY 228 T +P +P + P ++ GE AL L K + K + Sbjct: 180 VSQQMETCKVDIQENHDDVYGVPSLEELGFPTDGLAPAVWQGGETEALARLDKHLERKAW 239 Query: 229 YYVEQRDIPAIQGTS------QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWL 282 V + P + S LSPYL G LS R + RL E + + + + S Sbjct: 240 --VANYERPRMNANSLLASPTGLSPYLRFGCLSCRLFYYRLWELYKKVK-RNSTPPLSLY 296 Query: 283 NELIWREFYRHLMAFYPSV--CMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAM 340 +L+WREF+ P G P +I W+K+ L W +G TGFP IDA M Sbjct: 297 GQLLWREFFYTAATNNPKFDRMEGNPI---CIQIPWDKNPEALAKWAEGKTGFPWIDAIM 353 Query: 341 RQLNTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTG 399 QL GW+H+ R A FL + DL + W G F LLD D + N G W W + + Sbjct: 354 TQLRQEGWIHHLARHAVACFLTRGDLWISWESGVRVFDELLLDADFSVNAGSWMWLSCSA 413 Query: 400 NDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLD------KNDLS 453 +F + P G+R DP G +++ +LP+L P++YI+ P + + K + Sbjct: 414 FFQQ-FFHCYCPVGFGRRTDPSGDYVKRYLPKLKGFPSRYIYEPWNAPESVQKAAKCIIG 472 Query: 454 LNYPLPIVDHKK 465 ++YP P+V+H + Sbjct: 473 VDYPKPMVNHAE 484 >gi|18858461|ref|NP_571864.1| cryptochrome 1a isoform 2 [Danio rerio] gi|8698584|dbj|BAA96846.1| cryptochrome 1a [Danio rerio] Length = 556 Score = 129 bits (325), Expect = 8e-28, Method: Compositional matrix adjust. Identities = 91/275 (33%), Positives = 132/275 (48%), Gaps = 22/275 (8%) Query: 207 MFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS------QLSPYLSIGVLSPRQCW 260 ++P GE AL L + + K + V + P + S LSPYL G LS R + Sbjct: 209 VWPGGETEALTRLERHLERKAW--VANFERPRMNANSLLASPTGLSPYLRFGCLSCRLFY 266 Query: 261 NRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSV--CMGKPFIPWTEKIEWNK 318 +L + + + K S S +L+WREF+ P G P +I W+K Sbjct: 267 FKLTDLYRKVK-KNSSPPLSLYGQLLWREFFYTAATNNPRFDKMEGNPIC---VQIPWDK 322 Query: 319 DSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFM 377 + L W +G TGFP IDA M QL GW+H+ R A FL + DL + W G + F Sbjct: 323 NPEALAKWAEGRTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWISWEEGMKVFE 382 Query: 378 SQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPT 437 LLD D + N G W W S + +F + P G+R DP G +IR +LP L P Sbjct: 383 ELLLDADWSVNAGSWMW-LSCSSFFQQFFHCYCPVSFGRRTDPNGDYIRRYLPVLRGFPA 441 Query: 438 QYIHAPHSWLD------KNDLSLNYPLPIVDHKKA 466 +YI+ P + + K + ++YP+P+V H +A Sbjct: 442 KYIYDPWNAPESVQKAAKCIIGVHYPMPMVHHAEA 476 >gi|229515204|ref|ZP_04404664.1| deoxyribodipyrimidine photolyase single-strand-specific [Vibrio cholerae TMA 21] gi|229347909|gb|EEO12868.1| deoxyribodipyrimidine photolyase single-strand-specific [Vibrio cholerae TMA 21] Length = 462 Score = 129 bits (325), Expect = 9e-28, Method: Compositional matrix adjust. Identities = 120/436 (27%), Positives = 189/436 (43%), Gaps = 38/436 (8%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKV-------IAVFIATPEQWRQHGISARQSHFI 61 + L W NDLR+ DN L A D + I F+A Q Q G + ++ F+ Sbjct: 5 IGLYWFTNDLRVNDNPLLEQASQQVDRLICLYCYPSITPFLARYAQQTQWGEAKKR--FL 62 Query: 62 YASLLQVQKSLSQKG------IVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEIN 115 +L + SLS G ++ Y + +E +T ++ + + Sbjct: 63 NQTLADLDHSLSTLGQKLWVTLLLPYQALRHLLTQVE----------ITDIYVDAMAGSD 112 Query: 116 EVRRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQ-MYKVYTPFRKALIQNLVQADL 174 E + + + I + S+L P L A++ + +T FRK ++ L L Sbjct: 113 ERQAIARIHQDFSSVHIHQQALHSLLSEPQ--LPFAIEALPSTFTQFRKQ-VETL---SL 166 Query: 175 RSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNAL-HILRKFCKEKVYYYVEQ 233 S P+ R+ P+ D + F GEQ L H F Y E Sbjct: 167 SSAPIGYPRVLPPIEQGWQLPLMDIVTEPNHSAFVGGEQAGLTHCQNYFSSMLPSRYKET 226 Query: 234 RD-IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYR 292 R+ + + +++ SP+L++G +SP+ + L+ + + + EL+WRE++ Sbjct: 227 RNGLDGMDYSTKFSPWLALGAVSPKTIYAMLQR--YEAVHGANDSTYWIFFELLWREYFY 284 Query: 293 HLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNR 352 Y + I + + LQ WK G T FPI++A MRQLN G+M NR Sbjct: 285 WYARRYGAKLFRFSGIGEKKPLTSFYAQRFLQ-WKHGETPFPIVNACMRQLNQTGYMSNR 343 Query: 353 LRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPT 412 R + AS LV +L +DWR G YF +QL+D D+ SN G WQ+ A G D R FN Sbjct: 344 GRQLVASCLVHELGLDWRYGAAYFETQLMDYDVGSNWGNWQYLAGVGADPRGS-RQFNLA 402 Query: 413 IQGKRFDPQGTFIRHW 428 Q +DP+G F+ W Sbjct: 403 KQAHTYDPKGEFVAKW 418 >gi|194378884|dbj|BAG57993.1| unnamed protein product [Homo sapiens] Length = 461 Score = 129 bits (325), Expect = 9e-28, Method: Compositional matrix adjust. Identities = 95/288 (32%), Positives = 136/288 (47%), Gaps = 29/288 (10%) Query: 197 FDYPFQAIDP-MFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS------QLSPYL 249 +P + + P ++ GE AL L K + K + V + P + S LSPYL Sbjct: 85 LGFPTEGLGPAVWQGGETEALARLDKHLERKAW--VANYERPRMNANSLLASPTGLSPYL 142 Query: 250 SIGVLSPRQCWNRLKEEFVDLLIKPKSGA---FSWLNELIWREFYRHLMAFYPSV--CMG 304 G LS R + RL DL K K + S +L+WREF+ P G Sbjct: 143 RFGCLSCRLFYYRL----WDLYKKVKRNSTPPLSLFGQLLWREFFYTAATNNPRFDRMEG 198 Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK- 363 P +I W+++ L W +G TGFP IDA M QL GW+H+ R A FL + Sbjct: 199 NPIC---IQIPWDRNPEALAKWAEGKTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRG 255 Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423 DL V W G F LLD D + N G W W + + +F + P G+R DP G Sbjct: 256 DLWVSWESGVRVFDELLLDADFSVNAGSWMWLSCSAFFQQ-FFHCYCPVGFGRRTDPSGD 314 Query: 424 FIRHWLPELNNVPTQYIHAPHSWLD------KNDLSLNYPLPIVDHKK 465 +IR +LP+L P++YI+ P + + K + ++YP PIV+H + Sbjct: 315 YIRRYLPKLKAFPSRYIYEPWNAPESIQKAAKCIIGVDYPRPIVNHAE 362 >gi|153800458|ref|ZP_01955044.1| RNA-binding cryptochrome Cry1 [Vibrio cholerae MZO-3] gi|124124084|gb|EAY42827.1| RNA-binding cryptochrome Cry1 [Vibrio cholerae MZO-3] Length = 462 Score = 129 bits (325), Expect = 9e-28, Method: Compositional matrix adjust. Identities = 122/430 (28%), Positives = 187/430 (43%), Gaps = 26/430 (6%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKV-------IAVFIATPEQWRQHGISARQSHFI 61 + L W NDLR+ DN L A D + I F+A Q Q G + ++ F+ Sbjct: 5 IGLYWFTNDLRVNDNPLLEQASQQVDRLICLYCYPSITPFLARYAQQTQWGEAKKR--FL 62 Query: 62 YASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDK 121 +L + SLS G + + L Q VT ++ + +E + Sbjct: 63 NQTLADLDHSLSTLGQKLWVTPLLPY----QALRHLLTQVEVTDIYVDAMAGSDERQSIA 118 Query: 122 LLEKRLQHRVICKSFDDSVLLPPGSILNHALQ-MYKVYTPFRKALIQNLVQADLRSLPVP 180 + + I + S+L P L AL+ + +T FRK ++ L L S P+ Sbjct: 119 HIHQDFSSVHIHQQALHSLLSEPQ--LPFALEALPSTFTQFRKQ-VETL---SLSSAPIG 172 Query: 181 AIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNAL-HILRKFCKEKVYYYVEQRD-IPA 238 R+ P+ D + F GEQ L H F Y E R+ + Sbjct: 173 YPRVLPPIEQGWQLPLMDIVTEPNHSAFVGGEQAGLTHCQHYFSSMLPSRYKETRNGLDG 232 Query: 239 IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFY 298 + +++ SP+L++G +SP+ + L+ + + + EL+WRE++ Y Sbjct: 233 MDYSTKFSPWLALGAVSPKTIYAMLQR--YEAVHGANDSTYWIFFELLWREYFYWYARRY 290 Query: 299 PSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITA 358 + I + + LQ WK G T FPI++A MRQLN G+M NR R + A Sbjct: 291 GAKLFRFSGIGEKKPLTSFYAQRFLQ-WKHGETPFPIVNACMRQLNQTGYMSNRGRQLVA 349 Query: 359 SFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRF 418 S LV +L +DWR G YF +QL+D D+ SN G WQ+ A G D R FN Q + Sbjct: 350 SCLVHELGLDWRYGAAYFETQLMDYDVGSNWGNWQYLAGVGADPRGS-RQFNLAKQAHTY 408 Query: 419 DPQGTFIRHW 428 DP+G F+ W Sbjct: 409 DPKGEFVAKW 418 >gi|121727641|ref|ZP_01680744.1| RNA-binding cryptochrome Cry1 [Vibrio cholerae V52] gi|121630028|gb|EAX62435.1| RNA-binding cryptochrome Cry1 [Vibrio cholerae V52] Length = 462 Score = 129 bits (325), Expect = 9e-28, Method: Compositional matrix adjust. Identities = 125/440 (28%), Positives = 191/440 (43%), Gaps = 46/440 (10%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKV-------IAVFIATPEQWRQHGISARQSHFI 61 + L W NDLR+ DN L A D + I F+A Q Q G + ++ F+ Sbjct: 5 IGLYWFTNDLRVNDNTLLEQASQQVDRLICLYCYPSITPFLARYAQQTQWGEAKKR--FL 62 Query: 62 YASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDK 121 +L + SLS G W+ Q + L Q EI ++ D Sbjct: 63 NQTLADLNHSLSTLGQKL-------------WVTPLLPYQALRHLL--TQVEITDIYVDA 107 Query: 122 LLEKRLQHRVICKSFDD--SVLLPPGSI--------LNHALQ-MYKVYTPFRKALIQNLV 170 ++ + + I + D SVL+ ++ L AL+ + +T FRK ++ L Sbjct: 108 VVGSD-ERQAIARIHQDFPSVLIHQQALHSLLSEPQLPFALEALPSTFTQFRKQ-VETL- 164 Query: 171 QADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNAL-HILRKFCKEKVYY 229 L S P+ R+ P+ D + F GEQ L H F Sbjct: 165 --SLSSAPIGYPRVLPPIEQGWQLPLLDIVAEPNHSAFIGGEQAGLTHCQNYFSSMLPSC 222 Query: 230 YVEQRD-IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWR 288 Y E R+ + + +++ SP+L++G +SP+ + L+ + + + EL+WR Sbjct: 223 YKETRNGLDGMDYSTKFSPWLALGAVSPKTIYAMLQR--YEAVHGANDSTYWIFFELLWR 280 Query: 289 EFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGW 348 E++ Y + I + + LQ WK G T FPI++A MRQLN G+ Sbjct: 281 EYFYWYARRYGAKLFRFSGIGEKKPLTSFYAQRFLQ-WKHGVTPFPIVNACMRQLNQTGY 339 Query: 349 MHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRI 408 M NR R + AS LV +L +DWR G YF +QL+D D+ SN G WQ+ A G D R Sbjct: 340 MSNRGRQLVASCLVHELGLDWRYGAAYFETQLVDYDVGSNWGNWQYLAGVGADPRGS-RQ 398 Query: 409 FNPTIQGKRFDPQGTFIRHW 428 FN Q +DP+G F+ W Sbjct: 399 FNLEKQAHTYDPKGEFVAKW 418 >gi|116267987|ref|NP_001070765.1| cryptochrome 1a isoform 1 [Danio rerio] gi|115528160|gb|AAI24763.1| Cryptochrome 1a [Danio rerio] Length = 619 Score = 129 bits (325), Expect = 9e-28, Method: Compositional matrix adjust. Identities = 105/350 (30%), Positives = 157/350 (44%), Gaps = 39/350 (11%) Query: 148 LNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT----GPVTPS---------NIP 194 L+ +++ +P Q L+ + + ++ PA +T GP T +P Sbjct: 135 LDKIIELNGGQSPLTYKRFQTLI-SRMEAVETPAETITAEVMGPCTTPLSDDHDEKFGVP 193 Query: 195 RFFDYPFQA---IDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS------QL 245 + F ++P GE AL L + + K + V + P + S L Sbjct: 194 SLEELGFDTEGLSSAVWPGGETEALTRLERHLERKAW--VANFERPRMNANSLLASPTGL 251 Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSV--CM 303 SPYL G LS R + +L + + + K S S +L+WREF+ P Sbjct: 252 SPYLRFGCLSCRLFYFKLTDLYRKVK-KNSSPPLSLYGQLLWREFFYTAATNNPRFDKME 310 Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363 G P +I W+K+ L W +G TGFP IDA M QL GW+H+ R A FL + Sbjct: 311 GNPIC---VQIPWDKNPEALAKWAEGRTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTR 367 Query: 364 -DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQG 422 DL + W G + F LLD D + N G W W S + +F + P G+R DP G Sbjct: 368 GDLWISWEEGMKVFEELLLDADWSVNAGSWMW-LSCSSFFQQFFHCYCPVSFGRRTDPNG 426 Query: 423 TFIRHWLPELNNVPTQYIH----APHSW--LDKNDLSLNYPLPIVDHKKA 466 +IR +LP L P +YI+ AP S K + ++YP+P+V H +A Sbjct: 427 DYIRRYLPVLRGFPAKYIYDPWNAPESVQKAAKCIIGVHYPMPMVHHAEA 476 >gi|55251266|emb|CAH69047.1| cryptochrome 1a [Danio rerio] gi|141796163|gb|AAI34839.1| Cry1a protein [Danio rerio] gi|190337408|gb|AAI63354.1| Cryptochrome 1a [Danio rerio] Length = 619 Score = 129 bits (325), Expect = 9e-28, Method: Compositional matrix adjust. Identities = 105/350 (30%), Positives = 157/350 (44%), Gaps = 39/350 (11%) Query: 148 LNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT----GPVTPS---------NIP 194 L+ +++ +P Q L+ + + ++ PA +T GP T +P Sbjct: 135 LDKIIELNGGQSPLTYKRFQTLI-SRMEAVETPAETITAEVMGPCTTPLSDDHDEKFGVP 193 Query: 195 RFFDYPFQA---IDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS------QL 245 + F ++P GE AL L + + K + V + P + S L Sbjct: 194 SLEELGFDTEGLSSAVWPGGETEALTRLERHLERKAW--VANFERPRMNANSLLASPTGL 251 Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSV--CM 303 SPYL G LS R + +L + + + K S S +L+WREF+ P Sbjct: 252 SPYLRFGCLSCRLFYFKLTDLYRKVK-KNSSPPLSLYGQLLWREFFYTAATNNPRFDKME 310 Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363 G P +I W+K+ L W +G TGFP IDA M QL GW+H+ R A FL + Sbjct: 311 GNPIC---VQIPWDKNPEALAKWAEGRTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTR 367 Query: 364 -DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQG 422 DL + W G + F LLD D + N G W W S + +F + P G+R DP G Sbjct: 368 GDLWISWEEGMKVFEELLLDADWSVNAGSWMW-LSCSSFFQQFFHCYCPVSFGRRTDPNG 426 Query: 423 TFIRHWLPELNNVPTQYIH----APHSW--LDKNDLSLNYPLPIVDHKKA 466 +IR +LP L P +YI+ AP S K + ++YP+P+V H +A Sbjct: 427 DYIRRYLPVLRGFPAKYIYDPWNAPESVQKAAKCIIGVHYPMPMVHHAEA 476 >gi|119618202|gb|EAW97796.1| cryptochrome 1 (photolyase-like), isoform CRA_b [Homo sapiens] Length = 427 Score = 129 bits (324), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 92/275 (33%), Positives = 132/275 (48%), Gaps = 22/275 (8%) Query: 207 MFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS------QLSPYLSIGVLSPRQCW 260 ++P GE AL L + + K + V + P + S LSPYL G LS R + Sbjct: 50 VWPGGETEALTRLERHLERKAW--VANFERPRMNANSLLASPTGLSPYLRFGCLSCRLFY 107 Query: 261 NRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSV--CMGKPFIPWTEKIEWNK 318 +L + + + K S S +L+WREF+ P G P +I W+K Sbjct: 108 FKLTDLYKKV-KKNSSPPLSLYGQLLWREFFYTAATNNPRFDKMEGNPIC---VQIPWDK 163 Query: 319 DSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFM 377 + L W +G TGFP IDA M QL GW+H+ R A FL + DL + W G + F Sbjct: 164 NPEALAKWAEGRTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWISWEEGMKVFE 223 Query: 378 SQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPT 437 LLD D + N G W W S + +F + P G+R DP G +IR +LP L P Sbjct: 224 ELLLDADWSINAGSWMW-LSCSSFFQQFFHCYCPVGFGRRTDPNGDYIRRYLPVLRGFPA 282 Query: 438 QYIHAPHSW------LDKNDLSLNYPLPIVDHKKA 466 +YI+ P + + K + +NYP P+V+H +A Sbjct: 283 KYIYDPWNAPEGIQKVAKCLIGVNYPKPMVNHAEA 317 >gi|149635020|ref|XP_001507425.1| PREDICTED: similar to Cryptochrome 2 (photolyase-like) [Ornithorhynchus anatinus] Length = 582 Score = 129 bits (324), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 96/288 (33%), Positives = 135/288 (46%), Gaps = 29/288 (10%) Query: 197 FDYPFQAIDP-MFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS------QLSPYL 249 +P + P ++ GE AL L K + K + V + P + S LSPYL Sbjct: 204 LGFPTDGLGPAVWQGGETEALARLDKHLERKAW--VANYERPRMNANSLLASPTGLSPYL 261 Query: 250 SIGVLSPRQCWNRLKEEFVDLLIKPKSGA---FSWLNELIWREFYRHLMAFYPSV--CMG 304 G LS R + RL DL K K + S +L+WREF+ P G Sbjct: 262 RFGCLSCRLFYYRL----WDLYKKVKRNSTPPLSLYGQLLWREFFYTAATNNPRFDRMEG 317 Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK- 363 P +I W+++ L W +G TGFP IDA M QL GW+H+ R A FL + Sbjct: 318 NPIC---IQIPWDRNPEALAKWAEGKTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRG 374 Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423 DL V W G F LLD D + N G W W + + +F + P G+R DP G Sbjct: 375 DLWVSWESGVRVFDELLLDADFSVNAGSWMWLSCSAFFQQ-FFHCYCPVGFGRRTDPSGD 433 Query: 424 FIRHWLPELNNVPTQYIHAPHSWLD------KNDLSLNYPLPIVDHKK 465 FIR +LP+L P++YI+ P + + K + ++YP PIV+H + Sbjct: 434 FIRRYLPKLKAFPSRYIYEPWNAPESVQKAAKCVIGVDYPRPIVNHAE 481 >gi|269961220|ref|ZP_06175588.1| conserved hypothetical protein [Vibrio harveyi 1DA3] gi|269834171|gb|EEZ88262.1| conserved hypothetical protein [Vibrio harveyi 1DA3] Length = 493 Score = 129 bits (324), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 128/453 (28%), Positives = 209/453 (46%), Gaps = 46/453 (10%) Query: 8 SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67 +++LVWL+ DLR+TD++ L A +S+ + ++I P SAR FI+ SL Sbjct: 3 TINLVWLKRDLRLTDHRPLQHAL-SSEHPTVLLYIVEPMLLDDPHYSARHWRFIWQSLQD 61 Query: 68 VQKSLSQKGIVFQYHQCSNFDDS-IEWLDSYCLQQRVTKLFYNRQYEIN-EVRRDKLLEK 125 + ++LS G HQ S S I+ L + Q + +F +++ ++ RD+ + Sbjct: 62 MNETLSALG-----HQVSVMSGSTIDCLSAIQNQFNINAIFSHQEIGLDCTFERDQQVSA 116 Query: 126 RLQ-HRVICKSFDDSVLLPPGSILNHA---LQMYKVYTPFRKALIQN--LVQADLRSLPV 179 LQ H + F+ G+++ A L K + +A I++ L A L +L Sbjct: 117 WLQAHSIPWHEFEH------GAVIRGAKDRLGWDKHWDTVMRAEIEDIDLESASLIALDA 170 Query: 180 PAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAI 239 A+ PS + + I M G A + F + + Y P Sbjct: 171 KALGCLFTPPPSWLEK--------IKGMQTGGSSLAWQTMEDFFQRRGRDYYRSISSPTA 222 Query: 240 QGT--SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAF 297 T ++LSPYL+ G +S R+ + L + + + A S + L W + H M Sbjct: 223 SRTACTRLSPYLAWGNISLREVYQYLLQHWQVAGFRRSLIALS--SRLHW---HCHFMQK 277 Query: 298 YPSVC------MGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHN 351 + S C + K + P ++ +D+ LL AWK G TG P+IDA MR L+ G+++ Sbjct: 278 FESECEMEFRYVNKAYDPLLQQAS-VRDAALLDAWKSGTTGIPLIDACMRCLHHTGYINF 336 Query: 352 RLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQW-AASTGNDSVPYFRIFN 410 R+R + SFL + +DWR G + LD + + +Q A TG +++ RI+N Sbjct: 337 RMRAMLVSFLTHHMNMDWRDGVTHLAQLFLDFEPGIHYPQFQMQAGVTGTNTI---RIYN 393 Query: 411 PTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAP 443 PT Q + D G FI W+PEL VPT + P Sbjct: 394 PTKQAQEHDANGEFIHKWIPELAMVPTPLLFEP 426 >gi|255025620|ref|ZP_05297606.1| hypothetical protein LmonocytFSL_03450 [Listeria monocytogenes FSL J2-003] Length = 127 Score = 129 bits (324), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 60/121 (49%), Positives = 83/121 (68%), Gaps = 6/121 (4%) Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424 +L+DWR GE+YF L+D D ASN GGWQWAASTG D+VPYFRIFNP Q ++FDP G F Sbjct: 1 MLIDWRFGEKYFQQMLIDYDPASNIGGWQWAASTGTDAVPYFRIFNPITQSQKFDPTGKF 60 Query: 425 IRHWLPELNNVPTQYIHAPH--SWLDKND----LSLNYPLPIVDHKKACHHTLNQYYAAK 478 IR ++ EL N+P ++IH P S +++ + L +YP PI+DHK+ + +Y +K Sbjct: 61 IREYVKELANLPDKFIHQPEKMSEIEQKEHGLLLGKDYPFPIIDHKERRKLAIARYEFSK 120 Query: 479 K 479 + Sbjct: 121 E 121 >gi|57233431|gb|AAW48291.1| cryptochrome-1b [Erithacus rubecula] Length = 587 Score = 129 bits (324), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 94/275 (34%), Positives = 131/275 (47%), Gaps = 22/275 (8%) Query: 207 MFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS------QLSPYLSIGVLSPRQCW 260 ++P GE AL L + + K V + P + S LSPYL G LS R + Sbjct: 209 VWPGGETEALTRLERHLERKAS--VANFERPRMNANSLLASPTGLSPYLRFGCLSCRLFY 266 Query: 261 NRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSV--CMGKPFIPWTEKIEWNK 318 +L + + + K S S +L+WREF+ P G P +I W+K Sbjct: 267 FKLTDLYKKVK-KNSSPPLSLYGQLLWREFFYTAATNNPRFDKMEGNPI---CVQIPWDK 322 Query: 319 DSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFM 377 + L W +G TGFP IDA M QL GW+H+ R A FL + DL + W G + F Sbjct: 323 NPEALAKWAEGRTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWISWEEGMKVFE 382 Query: 378 SQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPT 437 LLD D + N G W W S + +F + P G+R DP G +IR +LP L P Sbjct: 383 ELLLDADWSVNAGSWMW-LSCSSFFQQFFHCYCPVGFGRRTDPNGDYIRRYLPVLRGFPA 441 Query: 438 QYIH----APHSW--LDKNDLSLNYPLPIVDHKKA 466 +YI+ AP S K + +NYP P+V+H +A Sbjct: 442 KYIYDPWNAPESIQKAAKCIIGVNYPKPMVNHAEA 476 >gi|118572249|sp|Q5IZC5|CRY1_ERIRU RecName: Full=Cryptochrome-1 gi|57233429|gb|AAW48290.1| cryptochrome-1a [Erithacus rubecula] Length = 620 Score = 129 bits (324), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 94/275 (34%), Positives = 131/275 (47%), Gaps = 22/275 (8%) Query: 207 MFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS------QLSPYLSIGVLSPRQCW 260 ++P GE AL L + + K V + P + S LSPYL G LS R + Sbjct: 209 VWPGGETEALTRLERHLERKAS--VANFERPRMNANSLLASPTGLSPYLRFGCLSCRLFY 266 Query: 261 NRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSV--CMGKPFIPWTEKIEWNK 318 +L + + + K S S +L+WREF+ P G P +I W+K Sbjct: 267 FKLTDLYKKVK-KNSSPPLSLYGQLLWREFFYTAATNNPRFDKMEGNPIC---VQIPWDK 322 Query: 319 DSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFM 377 + L W +G TGFP IDA M QL GW+H+ R A FL + DL + W G + F Sbjct: 323 NPEALAKWAEGRTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWISWEEGMKVFE 382 Query: 378 SQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPT 437 LLD D + N G W W S + +F + P G+R DP G +IR +LP L P Sbjct: 383 ELLLDADWSVNAGSWMW-LSCSSFFQQFFHCYCPVGFGRRTDPNGDYIRRYLPVLRGFPA 441 Query: 438 QYIH----APHSW--LDKNDLSLNYPLPIVDHKKA 466 +YI+ AP S K + +NYP P+V+H +A Sbjct: 442 KYIYDPWNAPESIQKAAKCIIGVNYPKPMVNHAEA 476 >gi|254227923|ref|ZP_04921353.1| Deoxyribodipyrimidine photolyase [Vibrio sp. Ex25] gi|262396094|ref|YP_003287947.1| deoxyribodipyrimidine photolyase single-strand-specific [Vibrio sp. Ex25] gi|151939419|gb|EDN58247.1| Deoxyribodipyrimidine photolyase [Vibrio sp. Ex25] gi|262339688|gb|ACY53482.1| deoxyribodipyrimidine photolyase single-strand-specific [Vibrio sp. Ex25] Length = 444 Score = 129 bits (324), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 125/439 (28%), Positives = 201/439 (45%), Gaps = 45/439 (10%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQH-----GISARQSHFIYA 63 + L W NDLR+ DN L AC D + + + QH + + F+ A Sbjct: 5 IGLYWFTNDLRLHDNPLLIDACAEMDELICLYCRPSVTPYLQHFAQETSLGRAKLQFLEA 64 Query: 64 SLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLL 123 SL ++ +SL++ G + + + +I++ S+ +T ++ + +E + + Sbjct: 65 SLNELNQSLAKLGQRLWTVELTPYQ-AIKYAISHF---GITHIYADAFAGSDEQQALERA 120 Query: 124 EKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIR 183 K H V K LL + Q+ +T FRK ++ L DL S P ++ Sbjct: 121 IKGTPH-VNIKQQAIRTLLREEQLPFELRQLPATFTKFRKQ-VEGL---DL-SQPYESVH 174 Query: 184 LTGPV-TPSNIPRFFDYPFQAIDPMFPIGEQNAL-HILRKFCKEKVYYYVEQR-DIPAIQ 240 PV + N P Y F P+F GE + L H R F Y + R ++ ++ Sbjct: 175 ALPPVPSGMNFPTATTYYFDT-KPVFDGGELSGLEHCRRYFASSLASEYKQTRNELDGME 233 Query: 241 GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFS---WLN-ELIWREF------ 290 +++ SP+L+ G +SP + LK+ + K+GA W+ EL+WRE+ Sbjct: 234 YSTKFSPWLAHGCVSPTIIYAMLKQ------YEQKNGANDSTYWIYFELLWREYFYWYAR 287 Query: 291 -YRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWM 349 Y+ + + + P + + + WK+G T FPI++A M QLN G+M Sbjct: 288 KYQQKLFRFGGIANQPPLTSFY--------AQRFKQWKKGETPFPIVNACMHQLNKTGYM 339 Query: 350 HNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIF 409 NR R + AS LV +L +DWR G YF +QL+D D+ SN G WQ+ A G D R F Sbjct: 340 SNRGRQLVASCLVHELGLDWRYGAAYFETQLIDYDVGSNWGNWQYLAGVGADPRGS-RQF 398 Query: 410 NPTIQGKRFDPQGTFIRHW 428 N Q + +DP +FI W Sbjct: 399 NLEKQTQTYDPDFSFIDKW 417 >gi|149637939|ref|XP_001508613.1| PREDICTED: similar to cryptochrome 1 [Ornithorhynchus anatinus] Length = 577 Score = 129 bits (324), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 91/275 (33%), Positives = 132/275 (48%), Gaps = 22/275 (8%) Query: 207 MFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS------QLSPYLSIGVLSPRQCW 260 ++P GE AL L + + K + V + P + S LSPYL G LS R + Sbjct: 170 VWPGGETEALTRLERHLERKAW--VANFERPRMNANSLLASPTGLSPYLRFGCLSCRLFY 227 Query: 261 NRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSV--CMGKPFIPWTEKIEWNK 318 +L + + + K S S +L+WREF+ P G P +I W++ Sbjct: 228 FKLTDLYKKV-KKNSSPPLSLYGQLLWREFFYTAATSNPRFDKMEGNPI---CVQIPWDR 283 Query: 319 DSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFM 377 + L W +G TGFP IDA M QL GW+H+ R A FL + DL + W G + F Sbjct: 284 NPEALAKWAEGRTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWISWEEGMKVFE 343 Query: 378 SQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPT 437 LLD D + N G W W S + +F + P G+R DP G +IR +LP L P Sbjct: 344 ELLLDADWSVNAGSWMW-LSCSSFFQQFFHCYCPVGFGRRTDPNGDYIRRYLPVLRGFPA 402 Query: 438 QYIHAPHSWLD------KNDLSLNYPLPIVDHKKA 466 +YI+ P + + K + +NYP P+V+H +A Sbjct: 403 KYIYDPWNAPEGIQKAAKCIIGVNYPKPMVNHAEA 437 >gi|332836252|ref|XP_003313049.1| PREDICTED: cryptochrome-2 isoform 2 [Pan troglodytes] Length = 532 Score = 129 bits (323), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 95/289 (32%), Positives = 136/289 (47%), Gaps = 29/289 (10%) Query: 197 FDYPFQAIDP-MFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS------QLSPYL 249 +P + + P ++ GE AL L K + K + V + P + S LSPYL Sbjct: 156 LGFPTEGLGPAVWQGGETEALARLDKHLERKAW--VANYERPRMNANSLLASPTGLSPYL 213 Query: 250 SIGVLSPRQCWNRLKEEFVDLLIKPKSGA---FSWLNELIWREFYRHLMAFYPSV--CMG 304 G LS R + RL DL K K + S +L+WREF+ P G Sbjct: 214 RFGCLSCRLFYYRL----WDLYKKVKRNSTPPLSLFGQLLWREFFYTAATNNPRFDRMEG 269 Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK- 363 P +I W+++ L W +G TGFP IDA M QL GW+H+ R A FL + Sbjct: 270 NPIC---IQIPWDRNPEALAKWAEGKTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRG 326 Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423 DL V W G F LLD D + N G W W + + +F + P G+R DP G Sbjct: 327 DLWVSWESGVRVFDELLLDADFSVNAGSWMWLSCSAFFQQ-FFHCYCPVGFGRRTDPSGD 385 Query: 424 FIRHWLPELNNVPTQYIHAPHSWLD------KNDLSLNYPLPIVDHKKA 466 +IR +LP+L P++YI+ P + + K + ++YP PIV+H + Sbjct: 386 YIRRYLPKLKAFPSRYIYEPWNAPESIQKAAKCIIGVDYPRPIVNHAET 434 >gi|188536103|ref|NP_001120929.1| cryptochrome-2 isoform 2 [Homo sapiens] Length = 532 Score = 129 bits (323), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 95/289 (32%), Positives = 136/289 (47%), Gaps = 29/289 (10%) Query: 197 FDYPFQAIDP-MFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS------QLSPYL 249 +P + + P ++ GE AL L K + K + V + P + S LSPYL Sbjct: 156 LGFPTEGLGPAVWQGGETEALARLDKHLERKAW--VANYERPRMNANSLLASPTGLSPYL 213 Query: 250 SIGVLSPRQCWNRLKEEFVDLLIKPKSGA---FSWLNELIWREFYRHLMAFYPSV--CMG 304 G LS R + RL DL K K + S +L+WREF+ P G Sbjct: 214 RFGCLSCRLFYYRL----WDLYKKVKRNSTPPLSLFGQLLWREFFYTAATNNPRFDRMEG 269 Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK- 363 P +I W+++ L W +G TGFP IDA M QL GW+H+ R A FL + Sbjct: 270 NPIC---IQIPWDRNPEALAKWAEGKTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRG 326 Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423 DL V W G F LLD D + N G W W + + +F + P G+R DP G Sbjct: 327 DLWVSWESGVRVFDELLLDADFSVNAGSWMWLSCSAFFQQ-FFHCYCPVGFGRRTDPSGD 385 Query: 424 FIRHWLPELNNVPTQYIHAPHSWLD------KNDLSLNYPLPIVDHKKA 466 +IR +LP+L P++YI+ P + + K + ++YP PIV+H + Sbjct: 386 YIRRYLPKLKAFPSRYIYEPWNAPESIQKAAKCIIGVDYPRPIVNHAET 434 >gi|13022111|gb|AAK11644.1|AF333998_1 cryptochrome [Antheraea pernyi] Length = 525 Score = 129 bits (323), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 125/515 (24%), Positives = 208/515 (40%), Gaps = 80/515 (15%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 ++W R+ LR+ DN +L+AA + +F+ E + + ++ +L + Sbjct: 6 VLWFRHGLRLHDNPSLHAALEDRSVPFFPIFVFDGETAGTKLVGYNRMRYLLEALEDLDN 65 Query: 71 SLSQKG---IVFQYHQCSNFDDSIE--WLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125 + G I+ + F E + C +Q L+ R + R+ Sbjct: 66 QFKKYGGKLIMLKGKPSDVFRRLWEEFGIRKLCFEQDCEPLWRARDDGVKSACREI---- 121 Query: 126 RLQHRVICKSF-------DDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLP 178 V C+ + D+V+ G I QM+ + + P Sbjct: 122 ----GVACREYVSHTLWEPDTVIRANGGIPPLTYQMF----------LHTVTIVGDPPRP 167 Query: 179 VPAIRLTGPVTPSNIPRFFDYPFQAIDPM-------------------FPIGEQNAL-HI 218 VP + ++G +T +P F F D + GE AL + Sbjct: 168 VPDVDMSG-ITFGTLPDCFYQEFTVFDKTPKPEDLGVFLENEDIRMIRWVGGETAALKQM 226 Query: 219 LRKFCKEKVYY----YVEQRDIPAIQGTS-QLSPYLSIGVLSPRQCWNRLKEEFVDLLIK 273 ++ E + Y+ P + G LSP L G LS R + +++ F + Sbjct: 227 QQRLAVEHETFRKGSYLPTHGSPDLLGPPISLSPALRFGCLSVRSFYWSVQDLFRQVHQG 286 Query: 274 PKSGAFSWLNELIWREFYRHLMAFYPS--------VCMGKPFIPWTEKIEWNKDSHLLQA 325 S A +LIWRE++ + P+ +C+ IPW + + LQ Sbjct: 287 RLSSAHFITGQLIWREYFYTMSVNNPNYGQMADNPICLD---IPWK-----HPEGDELQR 338 Query: 326 WKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLL-VDWRIGEEYFMSQLLDGD 384 W +G TGFP IDAAMRQL GW+H+ +R ASFL + L + W G +F+ LLD D Sbjct: 339 WIEGRTGFPFIDAAMRQLRAEGWLHHAVRNTVASFLTRGTLWLSWEHGLNHFLKYLLDAD 398 Query: 385 LASNNGGWQWAASTGNDS-VPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAP 443 + G W W +S+ ++ + P G+R DP G ++R ++PE+ +P YI+ P Sbjct: 399 WSVCAGNWMWVSSSAFEALLDSGECACPVRLGQRLDPSGEYVRRYVPEIARMPVDYIYEP 458 Query: 444 -HSWLDKND-----LSLNYPLPIVDHKKACHHTLN 472 + LD + +YP P+V+H A N Sbjct: 459 WKAPLDVQTRASCIIGKHYPAPLVNHIVAAQRNRN 493 >gi|253998728|ref|YP_003050791.1| cryptochrome, DASH family [Methylovorus sp. SIP3-4] gi|253985407|gb|ACT50264.1| cryptochrome, DASH family [Methylovorus sp. SIP3-4] Length = 454 Score = 129 bits (323), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 94/301 (31%), Positives = 144/301 (47%), Gaps = 42/301 (13%) Query: 157 VYTPFRKALIQNLVQADLRSLPVPAIRLTGPV--------TPSNIPRFFDYPFQAIDP-- 206 +T FR AL + VQA + P+P+I+ P+ PS + A +P Sbjct: 163 TFTTFRHALERAHVQA---ARPLPSIKQLPPLPSHALLNAIPSEVASDGTDHAMACEPWP 219 Query: 207 -----MFPIG-------EQNALHILRKFCKEKV--YYYVEQRDIPAIQGTSQLSPYLSIG 252 FP+G EQ AL L+++C+ ++ Y + + + +S+ SP+L+ G Sbjct: 220 YDARSAFPLGSSGFDGSEQAALQHLQQYCQRRLPHSYKSTRNGLIGVDYSSKWSPWLATG 279 Query: 253 VLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYR-----HLMAFYPSVCMGKPF 307 LS RQ W + + F +S + W EL+WR+ +R H Y + +G+ Sbjct: 280 ALSARQAWAAI-QAFEAEHGANESSYWLWF-ELLWRDHFRWLHFKHGKRLYRARGLGEAH 337 Query: 308 IPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLV 367 +P + D W +G TG P IDA MR+L G++ NR+R AS+L+ DL Sbjct: 338 VP-------SHDPDHFARWCRGETGQPFIDAGMRELAATGYLSNRMRQNVASYLIHDLGC 390 Query: 368 DWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRH 427 DWR G +F SQLLD D+ SN G W + + G D R FNP Q + +D G++ Sbjct: 391 DWRAGAAWFESQLLDYDVYSNQGNWLYLSGRGTDPR-QGRRFNPDKQAQDYDADGSYRAL 449 Query: 428 W 428 W Sbjct: 450 W 450 >gi|307611923|ref|NP_001182628.1| cryptochrome 1 [Bombyx mori] gi|306416108|gb|ADM86932.1| cryptochrome 1 [Bombyx mori] gi|306416112|gb|ADM86934.1| cryptochrome 1 [Bombyx mori] Length = 536 Score = 129 bits (323), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 125/519 (24%), Positives = 210/519 (40%), Gaps = 72/519 (13%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 ++W R+ LR+ DN +L++A + +FI E + + ++ +L + K Sbjct: 6 VLWFRHGLRLHDNPSLHSALEETSGPFFPIFIFDGETAGTKVVGYNRMRYLLEALDDLDK 65 Query: 71 SLSQKG---IVFQYHQCSNFDDSIE--WLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125 + G ++ + + F E + C +Q ++ R + R+ + Sbjct: 66 QFKKYGGRLLLVKGKPSAVFRRLWEEFGIRKLCFEQDCEPVWRPRDESVKTACREIGVTC 125 Query: 126 RLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185 R +H D+V+ G I QM+ + + PV +L Sbjct: 126 R-EHVSHTLWEPDTVIKANGGIPPLTYQMF----------LHTVATIGDPPRPVDNAKLR 174 Query: 186 GPVTPSNIPRFFDYPFQAIDPM-------------------FPIGEQNALHILR------ 220 G + +P F F D + + GE AL ++ Sbjct: 175 G-IKFGTLPLCFYEEFTVYDKVPNPEDLGVFLENEDIRMIRWVGGETAALKQMQHRLAVE 233 Query: 221 --KFCKEKVYYYVEQRDIPAIQGTS-QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSG 277 FC+ Y+ P + G LSP L G LS R+ + L++ F + Sbjct: 234 YETFCRGS---YLPTHGSPDLLGPPISLSPALRFGCLSVRKFYWSLQDLFQQVHQGSLCS 290 Query: 278 AFSWLNELIWREFYRHLMAFYP--------SVCMGKPFIPWTEKIEWNKDSHLLQAWKQG 329 +LIWRE++ + P +C+ IPW + + L+ W G Sbjct: 291 TQYITGQLIWREYFYTMSVNNPHYGQMTDNPICLD---IPWK-----SPEGDELERWASG 342 Query: 330 YTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLL-VDWRIGEEYFMSQLLDGDLASN 388 TGFP +DAAMRQL GW+H+ +R ASFL + L + W G +F+ LLD D + Sbjct: 343 RTGFPFVDAAMRQLRLEGWLHHAVRNTVASFLTRGTLWLSWEHGLAHFLKYLLDADWSVC 402 Query: 389 NGGWQWAASTGNDS-VPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAP-HSW 446 G W W +S+ ++ + P G+R DP G ++R ++PEL VPT+YI+ P + Sbjct: 403 AGNWMWVSSSAFEALLDSGECACPVRLGQRLDPSGEYVRRYVPELARVPTEYIYEPWKAP 462 Query: 447 LDKND-----LSLNYPLPIVDHKKACHHTLNQYYAAKKQ 480 LD + + +YP P+V+H A N K + Sbjct: 463 LDVQERANCIIGKDYPAPVVNHIVAAQRNRNAMEDTKME 501 >gi|153214304|ref|ZP_01949321.1| RNA-binding cryptochrome Cry1 [Vibrio cholerae 1587] gi|124115452|gb|EAY34272.1| RNA-binding cryptochrome Cry1 [Vibrio cholerae 1587] Length = 462 Score = 129 bits (323), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 121/430 (28%), Positives = 187/430 (43%), Gaps = 26/430 (6%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKV-------IAVFIATPEQWRQHGISARQSHFI 61 + L W NDLR+ DN L A D + I F+A Q Q G + ++ F+ Sbjct: 5 IGLYWFTNDLRVNDNPLLEQASQQVDRLICLYCYPSITPFLARYAQQTQWGEAKKR--FL 62 Query: 62 YASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDK 121 +L + SLS G + + L Q +T ++ + +E + Sbjct: 63 NQTLADLDHSLSTLGQKLWVTPLLPY----QALRHLLTQVEITDIYVDAMAGSDERQAIA 118 Query: 122 LLEKRLQHRVICKSFDDSVLLPPGSILNHALQ-MYKVYTPFRKALIQNLVQADLRSLPVP 180 + + I + S+L P L AL+ + +T FRK ++ L L S P+ Sbjct: 119 RIHQDFSSVHIHQQALHSLLSEPQ--LPFALEALPSTFTQFRKQ-VETL---SLSSAPIG 172 Query: 181 AIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNAL-HILRKFCKEKVYYYVEQRD-IPA 238 R+ P+ D + F GEQ L H F Y E R+ + Sbjct: 173 YPRVLPPIEQGWQLPLMDIVTEPNHSAFVGGEQAGLTHCQNYFSSMLPSRYKETRNGLDG 232 Query: 239 IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFY 298 + +++ SP+L++G +SP+ + L+ + + + EL+WRE++ Y Sbjct: 233 MDYSTKFSPWLALGAVSPKTIYAMLQR--YEAVHGANDSTYWIFFELLWREYFYWYARRY 290 Query: 299 PSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITA 358 + I + + LQ WK G T FPI++A MRQLN G+M NR R + A Sbjct: 291 GAKLFRFSGIGEKKPLTSFYAQRFLQ-WKHGETPFPIVNACMRQLNQTGYMSNRGRQLVA 349 Query: 359 SFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRF 418 S LV +L +DWR G YF +QL+D D+ SN G WQ+ A G D R FN Q + Sbjct: 350 SCLVHELGLDWRYGAAYFETQLMDYDVGSNWGNWQYLAGVGADPRGS-RQFNLEKQAHTY 408 Query: 419 DPQGTFIRHW 428 DP+G F+ W Sbjct: 409 DPKGEFVAKW 418 >gi|322707152|gb|EFY98731.1| cryptochrome-2 [Metarhizium anisopliae ARSEF 23] Length = 566 Score = 129 bits (323), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 103/325 (31%), Positives = 144/325 (44%), Gaps = 40/325 (12%) Query: 184 LTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYY--YVEQRDIPA--- 238 + GP I + F A + GE AL L K K Y + + + PA Sbjct: 165 IAGPKGDFAIETLEELGFPAATTPYRGGESIALKNLADIAKNKKYTATFEKPKTSPAQFE 224 Query: 239 IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFY 298 Q T+ LSP+L G LS R+ + R+++ + S +LI+R+ Y A Sbjct: 225 PQSTTLLSPFLHFGALSVREFYWRVQDVVEAYGKGASTPPASLTGQLIFRDMYFAAQAAV 284 Query: 299 PSV---CMGKP---FIPWTEKIEWNKDSHLL---------------QAWKQGYTGFPIID 337 + G P FIPW E + + L+ Q WK+G TGFP ID Sbjct: 285 GAKFTQTAGNPYCRFIPWHLPSERDSQTGLVTDKYTVDSDDAEKWFQRWKRGVTGFPWID 344 Query: 338 AAMRQLNTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAA 396 A MRQL GW+H+ R A FL + VDW G E F LLD + A N G WQW + Sbjct: 345 ALMRQLLHTGWIHHLGRHSLACFLTRGGCYVDWERGAEVFEVHLLDHEPACNAGNWQWLS 404 Query: 397 STGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNY 456 T S YFR ++P G+++D G IR W+PEL N+ ++YI+ P + Sbjct: 405 CTAFFSQ-YFRCYSPVSFGQKWDKNGDLIRKWVPELKNLDSKYIYEP------------W 451 Query: 457 PLPIVDHKKACHHTLNQYYAAKKQS 481 PI D KKA + ++Q Sbjct: 452 KAPIQDQKKAGVRVVGDGLGDQEQG 476 >gi|136255185|ref|NP_001077099.1| cryptochrome 2 [Apis mellifera] gi|133754347|gb|ABO38437.1| cryptochrome 2 [Apis mellifera] Length = 570 Score = 128 bits (322), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 94/281 (33%), Positives = 132/281 (46%), Gaps = 29/281 (10%) Query: 204 IDPMFPIGEQNALHILRKFCKEKVYY-------YVEQRDIPAIQGTSQLSPYLSIGVLSP 256 + P++ GE AL L + + K + Q +P+ G LSPYL G LS Sbjct: 224 LPPVWVGGESEALARLERHLERKAWVASFGRPKMTPQSLLPSQTG---LSPYLRFGCLST 280 Query: 257 RQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSV--CMGKPFIPWTEKI 314 R + +L + + IK S +L+WREF+ P+ G P +I Sbjct: 281 RLFYYQLTDLYKK--IKKAVPPLSLHGQLLWREFFYCAATKNPNFDRMQGNPIC---VQI 335 Query: 315 EWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK-DLLVDWRIGE 373 W+K+ L W G TGFP IDA M QL GW+H+ R A FL + DL + W G Sbjct: 336 PWDKNVEALAKWANGQTGFPWIDAIMTQLREEGWIHHLARHAVACFLTRGDLWISWEEGM 395 Query: 374 EYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELN 433 + F LLD D + N G W W S + +F + P G++ DP G +IR +LP L Sbjct: 396 KVFDELLLDADWSVNAGMWMW-LSCSSFFQQFFHCYCPVRFGRKADPNGDYIRRYLPVLK 454 Query: 434 NVPTQYIHAPHSW--------LDKNDLSLNYPLPIVDHKKA 466 N PT+YIH P W K + +Y LP+V+H K+ Sbjct: 455 NFPTRYIHEP--WNAPLNVQRAAKCIIGKDYSLPMVNHSKS 493 >gi|160334812|gb|ABX24814.1| cryptochrome 1 [Capsella rubella] Length = 155 Score = 128 bits (322), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 72/152 (47%), Positives = 97/152 (63%), Gaps = 8/152 (5%) Query: 323 LQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLD 382 +AW+QG TG+P++DA MR+L GW+H+R+R++ +SF VK L + WR G +YF LLD Sbjct: 3 FKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFVKVLQLPWRWGMKYFWDTLLD 62 Query: 383 GDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIH- 441 DL S+ GWQ+ T DS + RI NP +G +FDP G ++R WLPEL+ +PT +IH Sbjct: 63 ADLESDALGWQYITGTLPDSREFDRIDNPQFEGYKFDPNGEYVRRWLPELSRLPTDWIHH 122 Query: 442 ---APHSWLDKNDLSL--NYPLPIV--DHKKA 466 AP S L + L NYP PIV D KA Sbjct: 123 PWNAPESVLQAAGIELGSNYPRPIVXLDEAKA 154 >gi|78191297|gb|ABB29887.1| cryptochrome 2 [Anopheles gambiae] Length = 961 Score = 128 bits (322), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 93/274 (33%), Positives = 133/274 (48%), Gaps = 19/274 (6%) Query: 206 PMFPIGEQNALHILRKFCKEK--VYYYVEQRDIPAIQGTSQ--LSPYLSIGVLSPRQCWN 261 P++ GE AL L + + K V + + P SQ LSPYL G LS R + Sbjct: 209 PVWIGGETEALARLERHLERKAWVASFGRPKMTPQSLLASQTGLSPYLRFGCLSTRLFYY 268 Query: 262 RLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSV--CMGKPFIPWTEKIEWNKD 319 +L + + IK S +L+WREF+ P+ G P +I W+++ Sbjct: 269 QLTDLYKK--IKKACPPLSLHGQLLWREFFYCAATKNPTFDKMAGNPICV---QIPWDRN 323 Query: 320 SHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMS 378 + L W G TGFP IDA M QL GW+H+ R A FL + DL + W G + F Sbjct: 324 AEALAKWASGQTGFPWIDAIMTQLREEGWIHHLARHAVACFLTRGDLWISWEEGMKVFEE 383 Query: 379 QLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQ 438 LLD D + N G W W S + +F + P G++ DP G +IR +LP L N PT+ Sbjct: 384 LLLDADWSVNAGMWMW-LSCSSFFQQFFHCYCPVKFGRKADPNGDYIRRYLPVLKNFPTR 442 Query: 439 YIHAPHSWLD------KNDLSLNYPLPIVDHKKA 466 +IH P + + K + +YPLP+V+H A Sbjct: 443 FIHEPWNASESVQRAAKCLIGKDYPLPMVNHAIA 476 >gi|158291667|ref|XP_313179.3| AGAP004261-PA [Anopheles gambiae str. PEST] gi|157017656|gb|EAA44753.3| AGAP004261-PA [Anopheles gambiae str. PEST] Length = 961 Score = 128 bits (322), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 93/274 (33%), Positives = 133/274 (48%), Gaps = 19/274 (6%) Query: 206 PMFPIGEQNALHILRKFCKEK--VYYYVEQRDIPAIQGTSQ--LSPYLSIGVLSPRQCWN 261 P++ GE AL L + + K V + + P SQ LSPYL G LS R + Sbjct: 209 PVWIGGETEALARLERHLERKAWVASFGRPKMTPQSLLASQTGLSPYLRFGCLSTRLFYY 268 Query: 262 RLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSV--CMGKPFIPWTEKIEWNKD 319 +L + + IK S +L+WREF+ P+ G P +I W+++ Sbjct: 269 QLTDLYKK--IKKACPPLSLHGQLLWREFFYCAATKNPTFDKMAGNPICV---QIPWDRN 323 Query: 320 SHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMS 378 + L W G TGFP IDA M QL GW+H+ R A FL + DL + W G + F Sbjct: 324 AEALAKWASGQTGFPWIDAIMTQLREEGWIHHLARHAVACFLTRGDLWISWEEGMKVFEE 383 Query: 379 QLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQ 438 LLD D + N G W W S + +F + P G++ DP G +IR +LP L N PT+ Sbjct: 384 LLLDADWSVNAGMWMW-LSCSSFFQQFFHCYCPVKFGRKADPNGDYIRRYLPVLKNFPTR 442 Query: 439 YIHAPHSWLD------KNDLSLNYPLPIVDHKKA 466 +IH P + + K + +YPLP+V+H A Sbjct: 443 FIHEPWNASESVQRAAKCLIGKDYPLPMVNHAIA 476 >gi|160334784|gb|ABX24800.1| cryptochrome 1 [Capsella rubella] gi|160334786|gb|ABX24801.1| cryptochrome 1 [Capsella rubella] gi|160334788|gb|ABX24802.1| cryptochrome 1 [Capsella rubella] gi|160334790|gb|ABX24803.1| cryptochrome 1 [Capsella rubella] gi|160334792|gb|ABX24804.1| cryptochrome 1 [Capsella rubella] gi|160334794|gb|ABX24805.1| cryptochrome 1 [Capsella rubella] gi|160334796|gb|ABX24806.1| cryptochrome 1 [Capsella rubella] gi|160334798|gb|ABX24807.1| cryptochrome 1 [Capsella rubella] gi|160334800|gb|ABX24808.1| cryptochrome 1 [Capsella rubella] gi|160334802|gb|ABX24809.1| cryptochrome 1 [Capsella rubella] gi|160334804|gb|ABX24810.1| cryptochrome 1 [Capsella rubella] gi|160334806|gb|ABX24811.1| cryptochrome 1 [Capsella rubella] gi|160334808|gb|ABX24812.1| cryptochrome 1 [Capsella rubella] gi|160334810|gb|ABX24813.1| cryptochrome 1 [Capsella rubella] gi|160334814|gb|ABX24815.1| cryptochrome 1 [Capsella rubella] gi|160334816|gb|ABX24816.1| cryptochrome 1 [Capsella rubella] gi|160334818|gb|ABX24817.1| cryptochrome 1 [Capsella rubella] gi|160334820|gb|ABX24818.1| cryptochrome 1 [Capsella rubella] gi|160334822|gb|ABX24819.1| cryptochrome 1 [Capsella rubella] gi|160334824|gb|ABX24820.1| cryptochrome 1 [Capsella rubella] gi|160334826|gb|ABX24821.1| cryptochrome 1 [Capsella bursa-pastoris] gi|160334830|gb|ABX24823.1| cryptochrome 1 [Capsella bursa-pastoris] gi|160334832|gb|ABX24824.1| cryptochrome 1 [Capsella bursa-pastoris] gi|160334834|gb|ABX24825.1| cryptochrome 1 [Capsella bursa-pastoris] gi|160334836|gb|ABX24826.1| cryptochrome 1 [Capsella bursa-pastoris] gi|160334838|gb|ABX24827.1| cryptochrome 1 [Capsella bursa-pastoris] gi|160334840|gb|ABX24828.1| cryptochrome 1 [Capsella bursa-pastoris] gi|160334842|gb|ABX24829.1| cryptochrome 1 [Capsella bursa-pastoris] gi|160334844|gb|ABX24830.1| cryptochrome 1 [Capsella bursa-pastoris] gi|160334848|gb|ABX24832.1| cryptochrome 1 [Capsella bursa-pastoris] gi|160334850|gb|ABX24833.1| cryptochrome 1 [Capsella bursa-pastoris] gi|160334852|gb|ABX24834.1| cryptochrome 1 [Capsella bursa-pastoris] gi|160334854|gb|ABX24835.1| cryptochrome 1 [Capsella bursa-pastoris] gi|160334858|gb|ABX24837.1| cryptochrome 1 [Capsella bursa-pastoris] gi|160334860|gb|ABX24838.1| cryptochrome 1 [Capsella bursa-pastoris] gi|160334864|gb|ABX24840.1| cryptochrome 1 [Capsella bursa-pastoris] gi|160334866|gb|ABX24841.1| cryptochrome 1 [Capsella bursa-pastoris] gi|160334868|gb|ABX24842.1| cryptochrome 1 [Capsella bursa-pastoris] gi|160334870|gb|ABX24843.1| cryptochrome 1 [Capsella bursa-pastoris] gi|160334872|gb|ABX24844.1| cryptochrome 1 [Capsella bursa-pastoris] gi|160334874|gb|ABX24845.1| cryptochrome 1 [Capsella bursa-pastoris] gi|160334876|gb|ABX24846.1| cryptochrome 1 [Capsella bursa-pastoris] gi|160334878|gb|ABX24847.1| cryptochrome 1 [Capsella bursa-pastoris] gi|160334880|gb|ABX24848.1| cryptochrome 1 [Capsella bursa-pastoris] gi|160334882|gb|ABX24849.1| cryptochrome 1 [Capsella bursa-pastoris] gi|160334884|gb|ABX24850.1| cryptochrome 1 [Capsella bursa-pastoris] gi|160334886|gb|ABX24851.1| cryptochrome 1 [Capsella bursa-pastoris] gi|160334888|gb|ABX24852.1| cryptochrome 1 [Capsella bursa-pastoris] gi|160334890|gb|ABX24853.1| cryptochrome 1 [Capsella bursa-pastoris] gi|160334892|gb|ABX24854.1| cryptochrome 1 [Capsella bursa-pastoris] gi|160334894|gb|ABX24855.1| cryptochrome 1 [Capsella bursa-pastoris] gi|160334896|gb|ABX24856.1| cryptochrome 1 [Capsella bursa-pastoris] gi|160334898|gb|ABX24857.1| cryptochrome 1 [Capsella bursa-pastoris] gi|160334900|gb|ABX24858.1| cryptochrome 1 [Capsella bursa-pastoris] gi|160334902|gb|ABX24859.1| cryptochrome 1 [Capsella bursa-pastoris] gi|160334904|gb|ABX24860.1| cryptochrome 1 [Capsella bursa-pastoris] gi|160334906|gb|ABX24861.1| cryptochrome 1 [Capsella bursa-pastoris] gi|160334908|gb|ABX24862.1| cryptochrome 1 [Capsella bursa-pastoris] gi|160334918|gb|ABX24867.1| cryptochrome 1 [Capsella bursa-pastoris] gi|160334922|gb|ABX24869.1| cryptochrome 1 [Capsella bursa-pastoris] gi|160334924|gb|ABX24870.1| cryptochrome 1 [Capsella bursa-pastoris] gi|160334926|gb|ABX24871.1| cryptochrome 1 [Capsella bursa-pastoris] gi|160334928|gb|ABX24872.1| cryptochrome 1 [Capsella bursa-pastoris] gi|160334930|gb|ABX24873.1| cryptochrome 1 [Capsella bursa-pastoris] gi|160334932|gb|ABX24874.1| cryptochrome 1 [Capsella bursa-pastoris] gi|160334934|gb|ABX24875.1| cryptochrome 1 [Capsella bursa-pastoris] gi|160334936|gb|ABX24876.1| cryptochrome 1 [Capsella bursa-pastoris] gi|160334938|gb|ABX24877.1| cryptochrome 1 [Capsella bursa-pastoris] gi|160334940|gb|ABX24878.1| cryptochrome 1 [Capsella bursa-pastoris] gi|160334942|gb|ABX24879.1| cryptochrome 1 [Capsella bursa-pastoris] gi|160334944|gb|ABX24880.1| cryptochrome 1 [Capsella bursa-pastoris] gi|160334946|gb|ABX24881.1| cryptochrome 1 [Capsella bursa-pastoris] gi|160334948|gb|ABX24882.1| cryptochrome 1 [Capsella bursa-pastoris] gi|160334950|gb|ABX24883.1| cryptochrome 1 [Capsella bursa-pastoris] gi|160334952|gb|ABX24884.1| cryptochrome 1 [Capsella bursa-pastoris] gi|160334954|gb|ABX24885.1| cryptochrome 1 [Capsella bursa-pastoris] gi|160334956|gb|ABX24886.1| cryptochrome 1 [Capsella bursa-pastoris] gi|160334958|gb|ABX24887.1| cryptochrome 1 [Capsella bursa-pastoris] gi|160334960|gb|ABX24888.1| cryptochrome 1 [Capsella bursa-pastoris] gi|160334962|gb|ABX24889.1| cryptochrome 1 [Capsella bursa-pastoris] gi|160334964|gb|ABX24890.1| cryptochrome 1 [Capsella bursa-pastoris] gi|160334966|gb|ABX24891.1| cryptochrome 1 [Capsella bursa-pastoris] gi|160334968|gb|ABX24892.1| cryptochrome 1 [Capsella bursa-pastoris] gi|160334970|gb|ABX24893.1| cryptochrome 1 [Capsella bursa-pastoris] gi|160334972|gb|ABX24894.1| cryptochrome 1 [Capsella bursa-pastoris] gi|160334974|gb|ABX24895.1| cryptochrome 1 [Capsella bursa-pastoris] gi|160334976|gb|ABX24896.1| cryptochrome 1 [Capsella bursa-pastoris] gi|160334978|gb|ABX24897.1| cryptochrome 1 [Capsella bursa-pastoris] gi|160334980|gb|ABX24898.1| cryptochrome 1 [Capsella bursa-pastoris] gi|160334982|gb|ABX24899.1| cryptochrome 1 [Capsella bursa-pastoris] gi|160334984|gb|ABX24900.1| cryptochrome 1 [Capsella bursa-pastoris] gi|160334986|gb|ABX24901.1| cryptochrome 1 [Capsella bursa-pastoris] gi|160334988|gb|ABX24902.1| cryptochrome 1 [Capsella bursa-pastoris] gi|160334990|gb|ABX24903.1| cryptochrome 1 [Capsella bursa-pastoris] gi|160334992|gb|ABX24904.1| cryptochrome 1 [Capsella bursa-pastoris] gi|160334994|gb|ABX24905.1| cryptochrome 1 [Capsella bursa-pastoris] gi|160334996|gb|ABX24906.1| cryptochrome 1 [Capsella bursa-pastoris] gi|160334998|gb|ABX24907.1| cryptochrome 1 [Capsella bursa-pastoris] gi|160335000|gb|ABX24908.1| cryptochrome 1 [Capsella bursa-pastoris] gi|160335002|gb|ABX24909.1| cryptochrome 1 [Capsella bursa-pastoris] gi|160335004|gb|ABX24910.1| cryptochrome 1 [Capsella bursa-pastoris] gi|160335006|gb|ABX24911.1| cryptochrome 1 [Capsella bursa-pastoris] gi|160335008|gb|ABX24912.1| cryptochrome 1 [Capsella bursa-pastoris] gi|260765935|gb|ACX49998.1| cryptochrome 1 [Capsella bursa-pastoris] gi|260765943|gb|ACX50002.1| cryptochrome 1 [Capsella bursa-pastoris] gi|260765947|gb|ACX50004.1| cryptochrome 1 [Capsella bursa-pastoris] gi|260765949|gb|ACX50005.1| cryptochrome 1 [Capsella bursa-pastoris] gi|260765951|gb|ACX50006.1| cryptochrome 1 [Capsella bursa-pastoris] Length = 155 Score = 128 bits (322), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 72/152 (47%), Positives = 97/152 (63%), Gaps = 8/152 (5%) Query: 323 LQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLD 382 +AW+QG TG+P++DA MR+L GW+H+R+R++ +SF VK L + WR G +YF LLD Sbjct: 3 FKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFVKVLQLPWRWGMKYFWDTLLD 62 Query: 383 GDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIH- 441 DL S+ GWQ+ T DS + RI NP +G +FDP G ++R WLPEL+ +PT +IH Sbjct: 63 ADLESDALGWQYITGTLPDSREFDRIDNPQFEGYKFDPNGEYVRRWLPELSRLPTDWIHH 122 Query: 442 ---APHSWLDKNDLSL--NYPLPIV--DHKKA 466 AP S L + L NYP PIV D KA Sbjct: 123 PWNAPESVLQAAGIELGSNYPRPIVGLDEAKA 154 >gi|91217386|ref|ZP_01254346.1| deoxyribodipyrimidine photolyase [Psychroflexus torquis ATCC 700755] gi|91184494|gb|EAS70877.1| deoxyribodipyrimidine photolyase [Psychroflexus torquis ATCC 700755] Length = 436 Score = 128 bits (322), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 111/440 (25%), Positives = 199/440 (45%), Gaps = 30/440 (6%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWR--QHGISARQSH---FIYA 63 + +VW RNDLR D K+L+ AC + +A V+ V+ P + ++G + + F+ Sbjct: 7 ITIVWFRNDLRTRDQKSLFDACQSENA-VLGVYCFDPSHFETTRYGFKKTEKYRAKFLIE 65 Query: 64 SLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLL 123 S+ Q+ +L I + E + Y +T +FY ++ E R + + Sbjct: 66 SVEQLSDNLQDLNISLHIAHKHPSEVFKELSERYA----ITSVFYQTEWTREEKRVEAKV 121 Query: 124 EKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLR-SLPVPAI 182 + L + +++D + P + +VYT FRK + Q+++R +P P Sbjct: 122 KSALPNADFIENYDQFLFHPEDLPYESFQDIPEVYTNFRKKCEK---QSEVRQKVPAPQP 178 Query: 183 RLTGPVTP--SNIPRFFDYPFQ--AIDP--MFPI--GEQNALHILRKFC--KEKVYYYVE 232 R T + + P D + DP FP GE A + + +K+ YY + Sbjct: 179 RPTHHLLEERNQAPNLSDLGLENFETDPRSAFPFKGGENEAWKRIEHYFWDTKKLQYYKK 238 Query: 233 QRD-IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFY 291 R+ + +S+ S +L+ G +S ++ ++ + +K + + ELIWR+++ Sbjct: 239 TRNGLLGTDYSSKFSAWLANGSISAVSIYHEVRA--FEKQVKKNQDTYWLIFELIWRDYF 296 Query: 292 RHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHN 351 +++ + + + + +W + L+ W G T ++A M ++ G+M N Sbjct: 297 KYISLKHGNKIFQIGGVL-NKDYDWGNNKKALRDWINGNTPEDFVNANMIEIKETGFMSN 355 Query: 352 RLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNP 411 R R S+ K+ DWRIG YF S L+D D+ SN G W + + GND P R FN Sbjct: 356 RGRQNVNSYWAKEWKQDWRIGAAYFESMLVDYDVHSNWGNWMYNSGVGND--PRDRKFNI 413 Query: 412 TIQGKRFDPQGTFIRHWLPE 431 Q R+D G + R WL + Sbjct: 414 KNQADRYDSGGKYQRTWLQD 433 >gi|160335068|gb|ABX24942.1| cryptochrome 1 [Capsella bursa-pastoris] Length = 186 Score = 128 bits (322), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 72/183 (39%), Positives = 107/183 (58%), Gaps = 11/183 (6%) Query: 261 NRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDS 320 N EE V+L +K + RE+ R++ +P +P + + W D Sbjct: 6 NEAGEESVNLFLK----------SIGLREYSRYISFNHP-YSHERPLLGHLKFFPWAVDE 54 Query: 321 HLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQL 380 + +AW+QG TG+P++DA MR+L GW+H+R+R++ +SF VK L + WR G +YF L Sbjct: 55 NYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFVKVLQLPWRWGMKYFWDTL 114 Query: 381 LDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYI 440 LD DL S+ GWQ+ T DS + RI NP +G +FDP G ++R WLPEL+ +PT +I Sbjct: 115 LDADLESDALGWQYITGTLPDSREFDRIDNPQFEGYKFDPNGEYVRRWLPELSRLPTDWI 174 Query: 441 HAP 443 H P Sbjct: 175 HHP 177 >gi|94733627|emb|CAK05311.1| cryptochrome 1b [Danio rerio] Length = 606 Score = 128 bits (321), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 90/273 (32%), Positives = 135/273 (49%), Gaps = 18/273 (6%) Query: 207 MFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS------QLSPYLSIGVLSPRQCW 260 ++P GE AL L + + K + V + P + S LSPYL G LS R + Sbjct: 209 VWPGGETEALTRLERHLERKAW--VANFERPRMNANSLLASPTGLSPYLRFGCLSCRLFY 266 Query: 261 NRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDS 320 +L + + + K + + S +L+WREF+ P + F P +I W+++ Sbjct: 267 FKLTDLYRKVK-KNSTPSLSLYGQLLWREFFYTAATNNPHFDKME-FNPICVQIPWDRNP 324 Query: 321 HLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQ 379 L W +G TGFP IDA M QL GW+H+ R A FL + DL + W G + F Sbjct: 325 EALAKWAEGQTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWISWEEGMKVFEEL 384 Query: 380 LLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQY 439 LLD D + N G W W S + +F + P G+R DP G +IR +LP L P ++ Sbjct: 385 LLDADWSVNAGSWMW-LSCSSFFQQFFHCYCPVGFGRRTDPNGDYIRRYLPILRGFPAKF 443 Query: 440 IH----APHSW--LDKNDLSLNYPLPIVDHKKA 466 I+ AP S + K + ++YP P+V+H +A Sbjct: 444 IYDPWNAPESVQKVAKCIIGVHYPKPMVNHAEA 476 >gi|8698586|dbj|BAA96847.1| cryptochrome 1b [Danio rerio] Length = 606 Score = 128 bits (321), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 90/273 (32%), Positives = 135/273 (49%), Gaps = 18/273 (6%) Query: 207 MFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS------QLSPYLSIGVLSPRQCW 260 ++P GE AL L + + K + V + P + S LSPYL G LS R + Sbjct: 209 VWPGGETEALTRLERHLERKAW--VANFERPRMNANSLLASPTGLSPYLRFGCLSCRLFY 266 Query: 261 NRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDS 320 +L + + + K + + S +L+WREF+ P + F P +I W+++ Sbjct: 267 FKLTDLYRKVK-KNSTPSLSLYGQLLWREFFYTAATNNPHFDKME-FNPICVQIPWDRNP 324 Query: 321 HLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQ 379 L W +G TGFP IDA M QL GW+H+ R A FL + DL + W G + F Sbjct: 325 EALAKWAEGQTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWISWEEGMKVFEEL 384 Query: 380 LLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQY 439 LLD D + N G W W S + +F + P G+R DP G +IR +LP L P ++ Sbjct: 385 LLDADWSVNAGSWMW-LSCSSFFQQFFHCYCPVGFGRRTDPNGDYIRRYLPILRGFPAKF 443 Query: 440 IH----APHSW--LDKNDLSLNYPLPIVDHKKA 466 I+ AP S + K + ++YP P+V+H +A Sbjct: 444 IYDPWNAPESVQKVAKCIIGVHYPKPMVNHAEA 476 >gi|148540005|ref|NP_571865.4| cryptochrome 1b [Danio rerio] gi|27882364|gb|AAH44558.1| Cry1b protein [Danio rerio] Length = 606 Score = 128 bits (321), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 90/273 (32%), Positives = 135/273 (49%), Gaps = 18/273 (6%) Query: 207 MFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS------QLSPYLSIGVLSPRQCW 260 ++P GE AL L + + K + V + P + S LSPYL G LS R + Sbjct: 209 VWPGGETEALTRLERHLERKAW--VANFERPRMNANSLLASPTGLSPYLRFGCLSCRLFY 266 Query: 261 NRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDS 320 +L + + + K + + S +L+WREF+ P + F P +I W+++ Sbjct: 267 FKLTDLYRKVK-KNSTPSLSLYGQLLWREFFYTAATNNPHFDKME-FNPICVQIPWDRNP 324 Query: 321 HLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQ 379 L W +G TGFP IDA M QL GW+H+ R A FL + DL + W G + F Sbjct: 325 EALAKWAEGQTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWISWEEGMKVFEEL 384 Query: 380 LLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQY 439 LLD D + N G W W S + +F + P G+R DP G +IR +LP L P ++ Sbjct: 385 LLDADWSVNAGSWMW-LSCSSFFQQFFHCYCPVGFGRRTDPNGDYIRRYLPILRGFPAKF 443 Query: 440 IH----APHSW--LDKNDLSLNYPLPIVDHKKA 466 I+ AP S + K + ++YP P+V+H +A Sbjct: 444 IYDPWNAPESVQKVAKCIIGVHYPKPMVNHAEA 476 >gi|63100688|gb|AAH95305.1| Cry2a protein [Danio rerio] gi|169158298|emb|CAQ13305.1| cryptochrome 2a [Danio rerio] Length = 658 Score = 128 bits (321), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 130/493 (26%), Positives = 205/493 (41%), Gaps = 55/493 (11%) Query: 8 SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67 S+H W R LR+ DN AL A +D V V+ P + + F+ L Sbjct: 5 SIH--WFRKGLRLHDNPALQEAVRGADT-VRCVYFLDPWFAGSSNLGVNRWRFLLQCLDD 61 Query: 68 VQ---KSLSQKGIVFQYHQCSNFDDSI-EWLDSYCLQQRVTKLFYNRQYEINEVRRDKLL 123 + + L+ + V + + F EW ++++L + E RD + Sbjct: 62 LDSNLRKLNSRLFVVRGQPANVFPRLFKEW--------KISRLTFEYDSEPFGKERDAAI 113 Query: 124 EKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLV-QADLRSLPVPAI 182 +K + S L L+ +++ P Q L+ + D +PV + Sbjct: 114 KKLAMEAGVEVIVKTSHTL---YNLDKIIELNGGQPPLTYKRFQTLISRMDPPEMPVETL 170 Query: 183 R---LTGPVTPSNIPRFFDYPFQAIDPM-----------FPIGEQNALHILRKFCKEKVY 228 + VTP + Y +++ + +P GE AL + + + K + Sbjct: 171 SNSIMGCCVTPVSEDHGDKYGVPSLEELGFDIEGLPSAVWPGGETEALTRIERHLERKAW 230 Query: 229 YYVEQRDIPAIQGTS------QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWL 282 V + P + S LSPYL G LS R + +L + + + K + S Sbjct: 231 --VANFERPRMNANSLLASPTGLSPYLRFGCLSCRLFYFKLTDLYRKV-KKTSTPPLSLY 287 Query: 283 NELIWREFYRHLMAFYPSV--CMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAM 340 +L+WREF+ P G P +I W+K+ L W + TGFP IDA M Sbjct: 288 GQLLWREFFYTAATTNPRFDKMEGNPIC---VRIPWDKNPEALAKWAEAKTGFPWIDAIM 344 Query: 341 RQLNTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTG 399 QL GW+H+ R A FL + DL + W G + F LLD D + N G W W S Sbjct: 345 TQLRQEGWIHHLARHAVACFLTRGDLWISWEEGMKVFEELLLDADWSVNAGSWMW-LSCS 403 Query: 400 NDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLD------KNDLS 453 + +F + P G+R DP G FIR +LP L P +YI+ P + D K + Sbjct: 404 SFFQQFFHCYCPVGFGRRTDPNGDFIRRYLPILRGFPAKYIYDPWNAPDSVQAAAKCIIG 463 Query: 454 LNYPLPIVDHKKA 466 ++YP P+V+H +A Sbjct: 464 VHYPKPMVNHAEA 476 >gi|260778007|ref|ZP_05886900.1| deoxyribodipyrimidine photolyase/cryptochrome family protein [Vibrio coralliilyticus ATCC BAA-450] gi|260606020|gb|EEX32305.1| deoxyribodipyrimidine photolyase/cryptochrome family protein [Vibrio coralliilyticus ATCC BAA-450] Length = 487 Score = 128 bits (321), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 128/491 (26%), Positives = 213/491 (43%), Gaps = 44/491 (8%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 ++LVWL+ DLR+TD+ L AA SD + ++ P+ S R F++ SL + Sbjct: 4 INLVWLKRDLRLTDHAPLNAAL-CSDTPTLIFYLFEPDLLANAHYSERHWRFVWQSLSDI 62 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEIN-EVRRDKLLEKRL 127 L+ C D + +L+ Q ++ L+ +++ ++ +RDK + K Sbjct: 63 NGHLAPFNAKVMVGGC----DVLSFLEKMAKQFQIEALYSHQETGLDVTFQRDKQVLKWC 118 Query: 128 QHRVIC-KSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 + R I F + ++ H + + Q +++A + S + A L Sbjct: 119 KDRQISWYEFANGAVVRGCKERKHWDKNW-----------QRVMRAPIESNALSAGALL- 166 Query: 187 PVTPSNIPRFFDYPFQAIDPMFPI---GEQNALHILRKFCKEKV--YYYVEQRDIPAIQG 241 P + F P + + I G + L F +V YY+ + + Sbjct: 167 PNLNDDFGIVFTPPEAWLSKVPGIQTGGVKVGWATLNDFFTRRVKHYYFSISSPSASREA 226 Query: 242 TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFS----WLNELIWREFYRHLMAF 297 S+LSPYL+ G LS R+ + L + D ++ AFS W I + H M F Sbjct: 227 CSRLSPYLAWGNLSLREVYQFLLSHWNDKGMRRSLIAFSSRLHWHCHFIQKFESEHQMEF 286 Query: 298 YPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMIT 357 C+ + + + + HL AWK+G TG+P++DA MR L G+++ R+R + Sbjct: 287 R---CVNRGYESLIQHSAKTNNDHL-TAWKEGNTGYPLVDACMRCLAHTGYLNFRMRAML 342 Query: 358 ASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKR 417 SFL L DWR G + S LD + + Q+ +G + RI+NPT Q Sbjct: 343 VSFLTHHLAQDWRNGVAHLASLFLDFEPGIHYA--QFQMQSGVTGINTIRIYNPTKQAID 400 Query: 418 FDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPL--------PIVDHKKACHH 469 DP G FI+ W+PEL +VP + P W +L Y + PI+D A Sbjct: 401 HDPDGVFIKKWVPELKDVPISLLFEP--WKMSAMEALMYDIEGSSIYLNPIIDLDTAGRE 458 Query: 470 TLNQYYAAKKQ 480 ++ +A KK+ Sbjct: 459 ARDRLWAWKKK 469 >gi|169158299|emb|CAQ13306.1| cryptochrome 2a [Danio rerio] Length = 659 Score = 128 bits (321), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 130/493 (26%), Positives = 205/493 (41%), Gaps = 55/493 (11%) Query: 8 SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67 S+H W R LR+ DN AL A +D V V+ P + + F+ L Sbjct: 5 SIH--WFRKGLRLHDNPALQEAVRGADT-VRCVYFLDPWFAGSSNLGVNRWRFLLQCLDD 61 Query: 68 VQ---KSLSQKGIVFQYHQCSNFDDSI-EWLDSYCLQQRVTKLFYNRQYEINEVRRDKLL 123 + + L+ + V + + F EW ++++L + E RD + Sbjct: 62 LDSNLRKLNSRLFVVRGQPANVFPRLFKEW--------KISRLTFEYDSEPFGKERDAAI 113 Query: 124 EKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLV-QADLRSLPVPAI 182 +K + S L L+ +++ P Q L+ + D +PV + Sbjct: 114 KKLAMEAGVEVIVKTSHTL---YNLDKIIELNGGQPPLTYKRFQTLISRMDPPEMPVETL 170 Query: 183 R---LTGPVTPSNIPRFFDYPFQAIDPM-----------FPIGEQNALHILRKFCKEKVY 228 + VTP + Y +++ + +P GE AL + + + K + Sbjct: 171 SNSIMGCCVTPVSEDHGDKYGVPSLEELGFDIEGLPSAVWPGGETEALTRIERHLERKAW 230 Query: 229 YYVEQRDIPAIQGTS------QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWL 282 V + P + S LSPYL G LS R + +L + + + K + S Sbjct: 231 --VANFERPRMNANSLLASPTGLSPYLRFGCLSCRLFYFKLTDLYRKV-KKTSTPPLSLY 287 Query: 283 NELIWREFYRHLMAFYPSV--CMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAM 340 +L+WREF+ P G P +I W+K+ L W + TGFP IDA M Sbjct: 288 GQLLWREFFYTAATTNPRFDKMEGNPIC---VRIPWDKNPEALAKWAEAKTGFPWIDAIM 344 Query: 341 RQLNTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTG 399 QL GW+H+ R A FL + DL + W G + F LLD D + N G W W S Sbjct: 345 TQLRQEGWIHHLARHAVACFLTRGDLWISWEEGMKVFEELLLDADWSVNAGSWMW-LSCS 403 Query: 400 NDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLD------KNDLS 453 + +F + P G+R DP G FIR +LP L P +YI+ P + D K + Sbjct: 404 SFFQQFFHCYCPVGFGRRTDPNGDFIRRYLPILRGFPAKYIYDPWNAPDSVQAAAKCIIG 463 Query: 454 LNYPLPIVDHKKA 466 ++YP P+V+H +A Sbjct: 464 VHYPKPMVNHAEA 476 >gi|301097555|ref|XP_002897872.1| cryptochrome, putative [Phytophthora infestans T30-4] gi|262106620|gb|EEY64672.1| cryptochrome, putative [Phytophthora infestans T30-4] Length = 694 Score = 128 bits (321), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 146/554 (26%), Positives = 227/554 (40%), Gaps = 118/554 (21%) Query: 11 LVWLRNDLRITDNKALYAACHN-------SDAKVIAVFIATPEQWRQHGISARQSHFIYA 63 +VW R DLRI DN AL AA D ++ + I + ++ + F+ Sbjct: 100 IVWFRRDLRIHDNLALDAAMRAQMQLQKAGDEEMALLPIYILHRPKRQRCGPVRFQFLLE 159 Query: 64 SLLQVQKSLSQ-KGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKL 122 ++ + +S+++ G + D+ E L + VT LF+ V RD Sbjct: 160 AIEDLARSIAKLDGRLLVLS-----GDAEEVLRTVIAAWGVTDLFFEAGVAHYAVDRDNR 214 Query: 123 LEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLR----SLP 178 + R I KS D +V G L + ++ ++ + + L++ + + P Sbjct: 215 V------RAIAKSLDVNVTTIRGVTLYNPHEIIRLNSGQAPTDYERLLEITEKMPQPTQP 268 Query: 179 VPA---------------------------------IRLTGPVTPSNIPRFFDYPFQAID 205 +PA + G V + F P A Sbjct: 269 IPAPVKLLNAACFSTDKLFSLLEDVCQQNPSEADVIAGVAGDVKKTESELFVAPPLTAFG 328 Query: 206 -----PMFPI--GEQNALHILRKFCKE--KVYYYVEQRDIP-AIQG--TSQLSPYLSIGV 253 P P+ GE A+ L FC++ +V + + + P +I G T+ LS YLS G Sbjct: 329 LTPPTPHAPLIGGESAAMKRLDDFCEDERRVGQFEKPKTSPVSIDGPSTTTLSAYLSFGC 388 Query: 254 LSPRQCWNRLKEEFVDLLIKPKSG---AFSWLNELIWREFYRHLMAFYPSVCMGKPFI-- 308 LS R+ + R+ F+ L + G + +L+WREF FY +C + F Sbjct: 389 LSAREFFYRIM--FIQLQYPHRPGLPTQVTLEGQLMWREF------FYCYMCGTRNFDSQ 440 Query: 309 ---PWTEKIEW----------------------NKDSHL----LQAWKQGYTGFPIIDAA 339 P ++I+W D L LQ WK G TGFP IDA Sbjct: 441 ELNPSCKQIDWRLLNEYYVSHPEYDEQEPKKVTEADEKLAMRQLQCWKDGRTGFPWIDAV 500 Query: 340 MRQLNTIGWMHNRLRMITASFLVKDLL-VDWRIGEEYFMSQLLDGDLASNNGGWQWAAST 398 MRQ+N GW H+ R A FL + +L + W G YF +++D D N G W W +++ Sbjct: 501 MRQINQEGWTHHAGRHAVACFLTRGVLYISWLRGATYFQEKMIDLDWPINVGNWLWVSAS 560 Query: 399 GNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYI----HAPHSWLDKND--L 452 Y R+ +P+ +R+D QG FIR ++P L N+P +Y+ AP D + Sbjct: 561 CF-FTNYRRMASPSTFPQRWDQQGQFIRKYIPALRNMPDKYVFEPWKAPLKVQRDADCLI 619 Query: 453 SLNYPLPIVDHKKA 466 NYP PIVD K A Sbjct: 620 GKNYPFPIVDSKLA 633 >gi|325105098|ref|YP_004274752.1| cryptochrome, DASH family [Pedobacter saltans DSM 12145] gi|324973946|gb|ADY52930.1| cryptochrome, DASH family [Pedobacter saltans DSM 12145] Length = 433 Score = 128 bits (321), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 117/441 (26%), Positives = 193/441 (43%), Gaps = 35/441 (7%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQS-----HFIYASL 65 LVW RNDLRI DN+ L A S +++ V+I P + +++ FI S+ Sbjct: 7 LVWFRNDLRIHDNEILIEATLKS-TEIVPVYIFDPRYYTDTSYGTKKTGKLRAQFIIDSV 65 Query: 66 LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125 ++KSL G + E L + V +++++R+ E +E Sbjct: 66 TDLKKSLKALGGDLLVVKGK----PEEVLPQLIKEYHVDEVYHHREVASEETDISSAVED 121 Query: 126 RL-QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRS-LPVPA-I 182 L + +V K F L + + ++ FRK + + + ++R P I Sbjct: 122 ALWKSQVNLKHFIGHTLYHKEDLPFPIKDIPDLFAKFRKKVER---EGEIRDPFETPGQI 178 Query: 183 RLTGPVTPSNIPRFFDYPFQ---AIDPMFPIGEQNALHILRKFCKEK---VYYYVEQRDI 236 + + S +P D F+ +D GE + L+ L ++ EK Y ++ + Sbjct: 179 SVPDSLASSEVPALEDLGFERSEQLDASIKGGESSGLNRLNEYLWEKDLLKEYKAKRNLL 238 Query: 237 PAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFS---WLNELIWREFYRH 293 SQLSP+LS+G +SPR+ + LK K G + NEL++R+F+R Sbjct: 239 TGFNNNSQLSPWLSLGCISPRKVYWELKR-----YEHEKGGTDNINLLFNELLFRDFFRF 293 Query: 294 LMAFYPSVCMGKPFIPWTEKIEWNKDSHLL-QAWKQGYTGFPIIDAAMRQLNTIGWMHNR 352 + + + F+ + + N + +L + WK G TG ++DA M +L G M + Sbjct: 294 MFKKHSTAY----FVDIAQPMSLNAEQQVLFEKWKNGETGIDLVDANMLELKHRGTMAYK 349 Query: 353 LRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPT 412 R A++L+ +L + W G YF L+D ASN G W A G FN Sbjct: 350 GRQTVAAYLISELELPWFYGAAYFEEMLIDYATASNWGNWALFAGIGTPQKEVNPAFNLD 409 Query: 413 IQGKRFDPQGTFIRHWLPELN 433 Q K DP+G +I+ WL EL Sbjct: 410 KQIKDSDPKGDYIKVWLSELT 430 >gi|88704316|ref|ZP_01102030.1| Deoxyribodipyrimidine photolyase [Congregibacter litoralis KT71] gi|88701367|gb|EAQ98472.1| Deoxyribodipyrimidine photolyase [Congregibacter litoralis KT71] Length = 434 Score = 128 bits (321), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 123/450 (27%), Positives = 188/450 (41%), Gaps = 40/450 (8%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 + W RNDLR+ DN L A + ++ ++ G+ ++ FI SL +Q Sbjct: 4 IYWFRNDLRLHDNPGLVEAAKADELLLLYLWPLQRAWCNTQGLGEQRERFITESLKALQD 63 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130 L G Q S + + Y V + ++ E R ++L +RL Sbjct: 64 DLQPLGQSLLVLQGSPELVIPDLVRDYG----VDAVHASQCAGSYETRAVRVLRERLH-- 117 Query: 131 VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLV----QADLRSLPVPAIRLTG 186 + + L I ++ + ++PFR+ + +NL DL LP P Sbjct: 118 IPVTEHAGNTLFRRSDIKALCPELPRSFSPFRRKVEKNLEPLKPSRDLPQLPPPPA---- 173 Query: 187 PVTPSNIPRFFDYPFQAIDPMFPI----GEQNALHILRKFCKE-KVYYYVEQRD-IPAIQ 240 VT F P A+ P + G L++F + Y E R+ + ++ Sbjct: 174 -VT------FHRIPDAAVKPPVGLPLRGGSSAGQRRLKQFLHSGAIRSYKETRNCLDPLE 226 Query: 241 GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFS---WLN-ELIWREFYRHLMA 296 G+S LSP+L++G LS R+ + E + + GA WL EL+WRE++ H A Sbjct: 227 GSSTLSPWLALGSLSAREVAAAVHEH------EAQEGANESTYWLVFELLWREYFFH-RA 279 Query: 297 FYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMI 356 V + + + + W G T P+++A M QL GWM NR R I Sbjct: 280 LQDGVSLFRHGGREGKVSRCTFEPRNFARWCAGDTNHPLVNALMHQLVATGWMSNRGRQI 339 Query: 357 TASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGK 416 AS L+ D +DWR G +F L+D D+ SN G WQ+ A G D R FN Q Sbjct: 340 AASCLIHDFGIDWRYGAAFFEKHLIDYDVGSNYGNWQYIAGVGADPR-GGRAFNIEKQTA 398 Query: 417 RFDPQGTFIRHWLPELNNVPTQYIHAPHSW 446 ++DP G FI W E P Y+ W Sbjct: 399 QYDPDGVFIAKWDGERAAQPM-YVTDAADW 427 >gi|307190470|gb|EFN74495.1| Cryptochrome-1 [Camponotus floridanus] Length = 525 Score = 127 bits (320), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 94/291 (32%), Positives = 134/291 (46%), Gaps = 40/291 (13%) Query: 204 IDPMFPIGEQNALHILRKFCKEKVYY-------YVEQRDIPAIQGTSQLSPYLSIGVLSP 256 + P++ GE AL L + + K + Q +P+ G LSPYL G LS Sbjct: 226 LPPVWVGGESEALARLERHLERKAWVASFGRPKMTPQSLLPSQTG---LSPYLRFGCLST 282 Query: 257 R-------QCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFI- 308 R + +++++ ++IK S +L+WREF FY + F Sbjct: 283 RLFYYQLTDLYKKVQDDCNPIVIKKAVPPLSLHGQLLWREF------FYCAATKNSNFDR 336 Query: 309 ----PWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK- 363 P +I W+K+ L W G TGFP IDA M QL GW+H+ R A FL + Sbjct: 337 MQGNPICVQIPWDKNVEALAKWANGQTGFPWIDAIMTQLREEGWIHHLARHAVACFLTRG 396 Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423 DL + W G + F LLD D + N G W W S + +F + P G++ DP G Sbjct: 397 DLWISWEEGMKVFDELLLDADWSVNAGMWMW-LSCSSFFQQFFHCYCPVRFGRKADPNGD 455 Query: 424 FIRHWLPELNNVPTQYIHAP--------HSWLDKNDLSLNYPLPIVDHKKA 466 +IR +LP L N PT+YIH P H+ K + Y LP+V+H K Sbjct: 456 YIRRYLPVLKNFPTRYIHEPWNAPLSIQHA--AKCVIGKEYSLPMVNHNKT 504 >gi|119476980|ref|ZP_01617261.1| deoxyribodipyrimidine photolyase [marine gamma proteobacterium HTCC2143] gi|119449787|gb|EAW31024.1| deoxyribodipyrimidine photolyase [marine gamma proteobacterium HTCC2143] Length = 528 Score = 127 bits (320), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 117/479 (24%), Positives = 202/479 (42%), Gaps = 41/479 (8%) Query: 8 SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67 ++++VW + DLRI D+ L AA S ++ +++ P+ W++ S R HFI+ L Sbjct: 23 TINVVWFKRDLRINDHGPLLAASKLS-LPILPLYVVEPDYWKKSFSSRRHWHFIHDCLTD 81 Query: 68 VQKSLSQKG--IVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQ--YEINEVRRDKLL 123 + ++S G +V + + C YN Q Y E Sbjct: 82 LNTAVSSLGQPLVIK-------------VGDVCAAIENIHSDYNVQGIYAHEETGNLWTY 128 Query: 124 EKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIR 183 ++ + R IC+ + + P + + L ++ R + ++ + L Sbjct: 129 QRDINVRKICELNNIPIHEYPLNGVVRKLASRNDWSVIRTKRMVEKIREKPKELKPLQRY 188 Query: 184 LTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGT- 242 ++ + P + P F + + + + G A+ LR F + Y+ P + Sbjct: 189 ISDKLPPKDDPMFGE---EFVGTVQNGGRNAAVDDLRGFLNHRSSGYLRHISGPRLSAVY 245 Query: 243 -SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKS----GAFSWLNELIWREFYRHLMAF 297 S+LS +L+ G LS R+ +K+ L K ++ + L WR + + Sbjct: 246 CSRLSAHLAWGSLSVREVVQSVKKRQQQLNTDDKKRFGRNLTAFNSRLAWRCHFIQKIED 305 Query: 298 YPSV---CMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLR 354 PS+ CM F E + + QAW G+TG+P IDA MR L GW+ R+R Sbjct: 306 QPSIETHCMHPAFEGLREN---DHNEERYQAWATGHTGYPFIDACMRNLIADGWITFRMR 362 Query: 355 MITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQ 414 + SF L +DWR+ ++ D + + Q +G + R++NP Q Sbjct: 363 AMLVSFASYQLWLDWRVIGDHLARLFTDFEPGIHYS--QLQMQSGVTGINAMRVYNPVKQ 420 Query: 415 GKRFDPQGTFIRHWLPELNNVPTQYIHAPHSW----LDKNDLSLN--YPLPIVDHKKAC 467 DP G +IR W+PEL ++P ++IH P +W +D L Y PIVD+ A Sbjct: 421 SIEHDPNGDYIRKWVPELADLPIEFIHEPWTWGKNLIDDASCILGTVYSEPIVDNASAA 479 >gi|18858465|ref|NP_571866.1| cryptochrome-1 [Danio rerio] gi|8698588|dbj|BAA96848.1| cryptochrome 2a [Danio rerio] Length = 655 Score = 127 bits (320), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 131/493 (26%), Positives = 204/493 (41%), Gaps = 55/493 (11%) Query: 8 SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67 S+H W R LR+ DN AL A +D V V+ P + + F+ L Sbjct: 5 SIH--WFRKGLRLHDNPALQEAVRGADT-VRCVYFLDPWFAGSSNLGVNRWRFLLQCLDD 61 Query: 68 VQ---KSLSQKGIVFQYHQCSNFDDSI-EWLDSYCLQQRVTKLFYNRQYEINEVRRDKLL 123 + + L+ + V + + F EW ++++L + E RD + Sbjct: 62 LDSNLRKLNSRLFVVRGQPANVFPRLFKEW--------KISRLTFEYDSEPFGKERDAAI 113 Query: 124 EKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLV-QADLRSLPVPAI 182 +K + S L L+ +++ P Q L+ + D +PV + Sbjct: 114 KKLAMEAGVEVIVKTSHTL---YNLDKIIELNGGQPPLTYKRFQTLISRMDPPEMPVETL 170 Query: 183 R---LTGPVTPS--------NIPRFFDYPFQA---IDPMFPIGEQNALHILRKFCKEKVY 228 + VTP +P + F ++P GE AL + + + K + Sbjct: 171 SNSIMGCCVTPVAEDHGDKYGVPSLEELGFDIEGLPSAVWPGGETEALTRIERHLERKAW 230 Query: 229 YYVEQRDIPAIQGTS------QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWL 282 V + P + S LSPYL G LS R + +L + + + K + S Sbjct: 231 --VANFERPRMNANSLLASPTGLSPYLRFGCLSCRLFYFKLTDLYRKV-KKTSTPPLSLY 287 Query: 283 NELIWREFYRHLMAFYPSV--CMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAM 340 +L+WREF+ P G P +I W+K+ L W + TGFP IDA M Sbjct: 288 GQLLWREFFYTAATTNPRFDKMEGNPIC---VRIPWDKNPEALAKWAEAKTGFPWIDAIM 344 Query: 341 RQLNTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTG 399 QL GW+H+ R A FL + DL + W G + F LLD D + N G W W S Sbjct: 345 TQLRQEGWIHHLARHAVACFLTRGDLWISWEEGMKVFEELLLDADWSVNAGSWMW-LSCS 403 Query: 400 NDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLD------KNDLS 453 + +F + P G+R DP G FIR +LP L P +YI+ P + D K + Sbjct: 404 SFFQQFFHCYCPVGFGRRTDPNGDFIRRYLPILRGFPAKYIYDPWNAPDSVQAAAKCIIG 463 Query: 454 LNYPLPIVDHKKA 466 ++YP P+V+H +A Sbjct: 464 VHYPKPMVNHAEA 476 >gi|152994374|ref|YP_001339209.1| cryptochrome DASH [Marinomonas sp. MWYL1] gi|150835298|gb|ABR69274.1| Cryptochrome DASH [Marinomonas sp. MWYL1] Length = 441 Score = 127 bits (320), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 120/438 (27%), Positives = 203/438 (46%), Gaps = 38/438 (8%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATP-----EQWRQHGISARQSHFI 61 M + LVW +DLR D L+ A D +I ++ P ++ G+SA + + Sbjct: 1 MKLGLVWFGDDLRCADQNMLWRAVQEVD-YLICLYCDEPHNNHPSRYATQGMSANRRRLL 59 Query: 62 YASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDK 121 L + L G Q S+ D + L+ + ++ L+ N +E + Sbjct: 60 NQGLQDLALQLQALG---QTLFVSSMDAATS-LNLLLNEIPISHLYRNHHGGWDEQQTLN 115 Query: 122 LLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPA 181 +E R I S+ P + A Q+ ++ FR+ L++NL D+ + P+PA Sbjct: 116 RIESRYSDVRIHLDHGLSLFTPSQLPFDIA-QLPDSFSKFRR-LVENL---DVFT-PLPA 169 Query: 182 IRLTGPVTPSNIPRFFDYPFQAID--PMFPIGEQNALHILRKFCKEKV--YYYVEQRDIP 237 ++ P +I + + I+ MF GE+ A+ L + + +Y + ++ Sbjct: 170 LQKLPPAPTFDIQCIRPWQLKQIEDNSMFTGGERAAVDQLSDYFSTNLPSHYKETRNELD 229 Query: 238 AIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFS--WLN-ELIWREFYRHL 294 + +++ SP+L+ G LS RQ + +D+ + S W+ EL+WRE++ Sbjct: 230 GWENSTKFSPWLAQGSLSARQI-----KASIDVYERDHGANESTYWIYFELLWREYFH-- 282 Query: 295 MAFYPSVCMGKP-FIPWTEKIEWNKDSHL---LQAWKQGYTGFPIIDAAMRQLNTIGWMH 350 + + C GK F+P + + S+ + W QG T +P+++A M+QLN G+M Sbjct: 283 ---WYATCYGKQLFLPGGLSGKQTQGSYYAERFRKWSQGNTPYPLVNACMKQLNETGFMS 339 Query: 351 NRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFN 410 NR R I AS L+ +L +DWR G YF QL+D + SN G WQ+ A G D R FN Sbjct: 340 NRGRQIVASCLIYELGIDWRYGAAYFEEQLIDYSVGSNWGNWQYIAGVGADPRG-GRHFN 398 Query: 411 PTIQGKRFDPQGTFIRHW 428 Q +++DP FI W Sbjct: 399 LQKQTEQYDPNLHFIHKW 416 >gi|312372433|gb|EFR20390.1| hypothetical protein AND_20159 [Anopheles darlingi] Length = 1043 Score = 127 bits (320), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 94/281 (33%), Positives = 135/281 (48%), Gaps = 19/281 (6%) Query: 206 PMFPIGEQNALHILRKFCKEK--VYYYVEQRDIPAIQGTSQ--LSPYLSIGVLSPRQCWN 261 P++ GE AL L + + K V + + P SQ LSPYL G LS R + Sbjct: 311 PVWIGGETEALARLERHLERKAWVASFGRPKMTPQSLLASQTGLSPYLRFGCLSTRLFYY 370 Query: 262 RLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSV--CMGKPFIPWTEKIEWNKD 319 +L + + IK S +L+WREF+ P+ G P +I W+++ Sbjct: 371 QLTDLYKK--IKKACPPLSLHGQLLWREFFYCAATKNPTFDKMAGNPICV---QIPWDRN 425 Query: 320 SHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMS 378 S L W G TGFP IDA M QL GW+H+ R A FL + DL + W G + F Sbjct: 426 SEALAKWASGQTGFPWIDAIMTQLREEGWIHHLARHAVACFLTRGDLWISWEEGMKVFEE 485 Query: 379 QLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQ 438 LLD D + N G W W S + +F + P G++ DP G +IR +LP L N PT+ Sbjct: 486 LLLDADWSVNAGMWMW-LSCSSFFQQFFHCYCPVKFGRKADPNGDYIRRYLPVLKNFPTR 544 Query: 439 YIHAPHSWLD------KNDLSLNYPLPIVDHKKACHHTLNQ 473 +IH P + + K + +YPLP+V+H A + + Sbjct: 545 FIHEPWNAPENVQRAAKCLIGKDYPLPMVNHAIASRANMER 585 >gi|44843616|emb|CAE54427.1| sCRY2L protein [Spalax judaei] Length = 606 Score = 127 bits (320), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 137/504 (27%), Positives = 207/504 (41%), Gaps = 65/504 (12%) Query: 1 MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHF 60 M SVH W R LR+ DN +L AA + V V+I P + + F Sbjct: 30 MAVDGGSSVH--WFRKGLRLHDNPSLLAAVRGARC-VRCVYILDPWFAASSSVGINRWRF 86 Query: 61 IYASLLQVQKSLSQ---KGIVFQYHQCSNFDDSI-EWLDSYCLQQRVTKLFYNRQYEINE 116 + SL + SL + + V + F EW VT+L + E Sbjct: 87 LLQSLEDLDTSLRKLNSRLFVVRGQPADVFPRLFKEW--------GVTRLTFEYDSEPFG 138 Query: 117 VRRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLV-QADLR 175 RD + K + + ++S L L+ + + P Q ++ + +L Sbjct: 139 KERDAAIMKMAKEAGVEVVTENSHTL---YDLDRIIDLNGQKPPLTYKRFQAIISRMELP 195 Query: 176 SLPVPAIRLTGPVTPS-------------NIPRF--FDYPFQAIDP-MFPIGEQNALHIL 219 PV A+ T S +P +P + + P ++ GE AL L Sbjct: 196 KKPVVAV--TSQQMESCRAEIQDNHDDTYGVPSLEELGFPTEGLGPAVWQGGETEALARL 253 Query: 220 RKFCKEKVYYYVEQRDIPAIQGTS------QLSPYLSIGVLSPRQCWNRLKEEFVDLLIK 273 K + K + V + P + S LSPYL G LS R + RL DL K Sbjct: 254 DKHLERKAW--VANYERPRMNANSLLASPTGLSPYLRFGCLSCRLFYYRL----WDLYKK 307 Query: 274 PKSGA---FSWLNELIWREFYRHLMAFYPSV--CMGKPFIPWTEKIEWNKDSHLLQAWKQ 328 K + S +L+WREF+ P G P +I W+++ L W + Sbjct: 308 VKRNSTPPLSLFGQLLWREFFYTAATNNPRFDRMEGNPIC---IQIPWDRNPEALAKWAE 364 Query: 329 GYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLAS 387 G TGFP IDA M QL GW+H+ R A F + DL V W G F LLD D + Sbjct: 365 GKTGFPWIDAIMTQLRQEGWIHHLARHAVACFPTRGDLWVSWESGVRVFDELLLDADFSV 424 Query: 388 NNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWL 447 N G W W + + +F + P G+R DP G +IR +LP+L P++YI+ P + Sbjct: 425 NAGSWMWLSCSAFFQQ-FFHCYCPVGFGRRTDPSGDYIRRYLPKLKGFPSRYIYEPWNAP 483 Query: 448 D------KNDLSLNYPLPIVDHKK 465 + + + ++YP P+V+H + Sbjct: 484 ESIQKAARCIIGVDYPRPMVNHAE 507 >gi|332021530|gb|EGI61895.1| Cryptochrome-1 [Acromyrmex echinatior] Length = 671 Score = 127 bits (320), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 94/281 (33%), Positives = 132/281 (46%), Gaps = 29/281 (10%) Query: 204 IDPMFPIGEQNALHILRKFCKEKVYY-------YVEQRDIPAIQGTSQLSPYLSIGVLSP 256 + P++ GE AL L + + K + Q +P+ G LSPYL G LS Sbjct: 226 LPPVWVGGESEALARLERHLERKAWVASFGRPKMTPQSLLPSQTG---LSPYLRFGCLST 282 Query: 257 RQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSV--CMGKPFIPWTEKI 314 R + +L + + IK S +L+WREF+ P+ G P +I Sbjct: 283 RLFYYQLTDLYKK--IKKAVPPLSLHGQLLWREFFYCAATKNPNFDKMQGNPIC---VQI 337 Query: 315 EWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK-DLLVDWRIGE 373 W+K+ L W G TGFP IDA M QL GW+H+ R A FL + DL + W G Sbjct: 338 PWDKNVEALAKWANGQTGFPWIDAIMTQLREEGWIHHLARHAVACFLTRGDLWISWEEGM 397 Query: 374 EYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELN 433 + F LLD D + N G W W S + +F + P G++ DP G +IR +LP L Sbjct: 398 KVFDELLLDADWSVNAGMWMW-LSCSSFFQQFFHCYCPVRFGRKADPNGDYIRRYLPVLK 456 Query: 434 NVPTQYIHAP--------HSWLDKNDLSLNYPLPIVDHKKA 466 N PT+YIH P H+ K + Y LP+V+H K+ Sbjct: 457 NFPTRYIHEPWNAPLSIQHA--AKCIIGKEYSLPMVNHNKS 495 >gi|129593762|gb|ABO31112.1| cryptochrome 2 protein [Bombus impatiens] Length = 574 Score = 127 bits (320), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 93/279 (33%), Positives = 132/279 (47%), Gaps = 25/279 (8%) Query: 204 IDPMFPIGEQNALHILRKFCKEKVYY-------YVEQRDIPAIQGTSQLSPYLSIGVLSP 256 + P++ GE AL L + + K + Q +P+ G LSPYL G LS Sbjct: 224 LPPVWVGGESEALARLERHLERKAWVASFGRPKMTPQSLLPSQTG---LSPYLRFGCLST 280 Query: 257 RQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSV--CMGKPFIPWTEKI 314 R + +L + + IK S +L+WREF+ P+ G P +I Sbjct: 281 RLFYYQLTDLYKK--IKKAVPPLSLHGQLLWREFFYCAATKNPNFDRMQGNPIC---VQI 335 Query: 315 EWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK-DLLVDWRIGE 373 W+K+ L W G TGFP IDA M QL GW+H+ R A FL + DL + W G Sbjct: 336 PWDKNVEALAKWANGQTGFPWIDAIMTQLREEGWIHHLARHAVACFLTRGDLWISWEEGM 395 Query: 374 EYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELN 433 + F LLD D + N G W W S + +F + P G++ DP G +IR +LP L Sbjct: 396 KVFDELLLDADWSVNAGMWMW-LSCSSFFQQFFHCYCPVRFGRKADPNGDYIRRYLPILK 454 Query: 434 NVPTQYIHAPHSW------LDKNDLSLNYPLPIVDHKKA 466 N PT+YIH P + K + +Y LP+V+H K+ Sbjct: 455 NFPTRYIHEPWNAPLSVQRAAKCIIGKDYSLPMVNHSKS 493 >gi|88807683|ref|ZP_01123195.1| Deoxyribodipyrimidine photolyase [Synechococcus sp. WH 7805] gi|88788897|gb|EAR20052.1| Deoxyribodipyrimidine photolyase [Synechococcus sp. WH 7805] Length = 493 Score = 127 bits (320), Expect = 4e-27, Method: Compositional matrix adjust. Identities = 127/484 (26%), Positives = 207/484 (42%), Gaps = 48/484 (9%) Query: 8 SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67 + LVW + DLR+ D++ L A + V+ ++I PE W Q SARQ F SL Sbjct: 4 GLQLVWFKRDLRLVDHQPLARAL--ARGPVLPLYIVEPELWSQPDCSARQWAFCRESLQD 61 Query: 68 VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQY-EINEVRRDKLLEKR 126 +Q++ ++ G D+++ L+ Q ++ L+ + + RD+ + Sbjct: 62 LQEAFAEVGQPLIIRS----GDAVDVLERARRQLGISALWSHEETGNAWTFARDRRVAAW 117 Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 + R I LP ++ LQ + + + + + +A + P L+G Sbjct: 118 ARERGIPWH-----ELPQFGVVRR-LQTRRGWA---RRWEERMGEA-ITPAPTGLTPLSG 167 Query: 187 PVTPSNIPRFFDYPFQAIDPMFPI----GEQNALHILRKFCKEKVYYYVEQRDIP--AIQ 240 + P ++P QA DP P G + L L F +V Y P A + Sbjct: 168 -IAPGDLPTNDALALQA-DPC-PYRQRGGRRLGLQELNDFLAHRVQGYCRSISSPNLAFK 224 Query: 241 GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPS 300 G S+LS Y++ G LS R+ R +E G S+ + L W + + P Sbjct: 225 GCSRLSAYITWGCLSMREVLQRSRE-------FQGRGVSSFSSRLHWHCHFIQKLEDQPP 277 Query: 301 VCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASF 360 + + F P+ I + D AW +G TG P +DA MR L GW++ R+R + SF Sbjct: 278 I-EWEDFHPFMRGIR-SLDDARFAAWAEGQTGVPFVDACMRALRAHGWINFRMRAMLMSF 335 Query: 361 LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAAS---TGNDSVPYFRIFNPTIQGKR 417 +L + WR + Q +D G W+ +G+ S+ RI+NP QG Sbjct: 336 ASYNLWLPWRDTGLHLARQFVD-----YEPGIHWSQCQMQSGSTSINTIRIYNPIKQGHD 390 Query: 418 FDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477 DP G FIR W PEL +VP ++H P S L +PIVD + + + Sbjct: 391 HDPDGAFIRRWCPELEDVPAVHLHEPWSL-----LGAPRSMPIVDCAISAREAKERIFEI 445 Query: 478 KKQS 481 ++ + Sbjct: 446 RRSA 449 >gi|302745152|gb|ADL62679.1| cryptochrome 1a [Phreatichthys andruzzii] Length = 623 Score = 127 bits (319), Expect = 4e-27, Method: Compositional matrix adjust. Identities = 133/496 (26%), Positives = 206/496 (41%), Gaps = 56/496 (11%) Query: 7 MSVHLV-WLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASL 65 M V+ V W R LR+ DN +L + + V V+I P + + F+ L Sbjct: 1 MVVNTVHWFRKGLRLHDNPSLRDSIQGAHT-VRCVYILDPWFAGSSNVGISRWRFLLQCL 59 Query: 66 LQVQKSL---SQKGIVFQYHQCSNFDDSI-EWLDSYCLQQRVTKLFYNRQYEINEVRRDK 121 + SL + + V + F EW +T+L Y E RD Sbjct: 60 EDLDASLRKLNSRLFVIRGQPTDVFPRLFKEW--------NITRLSYEYDSEPFGKERDA 111 Query: 122 LLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPA 181 ++K + S L L+ +++ +P Q L+ + + ++ PA Sbjct: 112 AIKKLANEAGVEVIVRISHTL---YDLDKIIELNGGQSPLTYKRFQTLI-SRMEAVETPA 167 Query: 182 IRLTGPV-----TPSN--------IPRFFDYPFQA---IDPMFPIGEQNALHILRKFCKE 225 +T V TP + +P + F ++P GE AL L + + Sbjct: 168 ETITAEVMGTCTTPVSDDHDEKFGVPSLEELGFDTEGLSSAVWPGGETEALTRLERHLER 227 Query: 226 KVYYYVEQRDIPAIQGTS------QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAF 279 K + V + P + S LSPYL G LS + + +L + + + K S Sbjct: 228 KAW--VANFERPRMNANSLLASPTGLSPYLRFGCLSCQLFYFKLTDLYRKVK-KNSSPPL 284 Query: 280 SWLNELIWREFYRHLMAFYPSV--CMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIID 337 S +L+WREF+ P G P +I W+K+ L W +G TGFP ID Sbjct: 285 SLYGQLLWREFFYTTATNNPRFDKMEGNPIC---VQIPWDKNPEALAKWAEGRTGFPWID 341 Query: 338 AAMRQLNTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAA 396 A M QL GW+H+ R A FL + DL + W G + F LLD D + N G W W Sbjct: 342 AIMTQLRQEGWIHHLARHAVACFLTRGDLWISWEEGMKVFEELLLDADWSVNAGSWMW-L 400 Query: 397 STGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLD------KN 450 S + +F + P G+R DP G +IR +LP L P +YI+ P + + K Sbjct: 401 SCSSFFQQFFHCYCPVSFGRRTDPNGDYIRRYLPVLRGFPAKYIYDPWTAPESVQKAAKC 460 Query: 451 DLSLNYPLPIVDHKKA 466 + ++YP P+V H +A Sbjct: 461 IIGVHYPKPMVHHAEA 476 >gi|307207594|gb|EFN85258.1| Cryptochrome-1 [Harpegnathos saltator] Length = 558 Score = 127 bits (319), Expect = 4e-27, Method: Compositional matrix adjust. Identities = 94/281 (33%), Positives = 132/281 (46%), Gaps = 29/281 (10%) Query: 204 IDPMFPIGEQNALHILRKFCKEKVYY-------YVEQRDIPAIQGTSQLSPYLSIGVLSP 256 + P++ GE AL L + + K + Q +P+ G LSPYL G LS Sbjct: 257 LPPVWVGGESEALARLERHLERKAWVASFGRPKMTPQSLLPSQTG---LSPYLRFGCLST 313 Query: 257 RQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSV--CMGKPFIPWTEKI 314 R + +L + + IK S +L+WREF+ P+ G P +I Sbjct: 314 RLFYYQLTDLYKK--IKKAMPPLSLHGQLLWREFFYCAATKNPNFDRMQGNPIC---VQI 368 Query: 315 EWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK-DLLVDWRIGE 373 W+K+ L W G TGFP IDA M QL GW+H+ R A FL + DL + W G Sbjct: 369 PWDKNVEALAKWANGQTGFPWIDAIMTQLREEGWIHHLARHAVACFLTRGDLWISWEEGM 428 Query: 374 EYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELN 433 + F LLD D + N G W W S + +F + P G++ DP G +IR +LP L Sbjct: 429 KVFDELLLDADWSVNAGMWMW-LSCSSFFQQFFHCYCPVRFGRKADPNGDYIRRYLPVLK 487 Query: 434 NVPTQYIHAP--------HSWLDKNDLSLNYPLPIVDHKKA 466 N PT+YIH P H+ K + Y LP+V+H K+ Sbjct: 488 NFPTRYIHEPWNAPLSIQHA--AKCIVGKEYSLPMVNHSKS 526 >gi|149725124|ref|XP_001490350.1| PREDICTED: similar to Cryptochrome-2 [Equus caballus] Length = 579 Score = 127 bits (319), Expect = 4e-27, Method: Compositional matrix adjust. Identities = 94/296 (31%), Positives = 137/296 (46%), Gaps = 29/296 (9%) Query: 197 FDYPFQAIDP-MFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS------QLSPYL 249 +P + + P ++ GE AL L K + K + V + P + S LSPYL Sbjct: 208 LGFPTEGLGPAVWQGGETEALARLDKHLERKAW--VANYERPRMNAASLLASPTGLSPYL 265 Query: 250 SIGVLSPRQCWNRLKEEFVDLLIKPKSGA---FSWLNELIWREFYRHLMAFYPSV--CMG 304 G LS R + RL DL K K + S +L+WREF+ P G Sbjct: 266 RFGCLSCRLFYYRL----WDLYRKVKRNSTPPLSLFGQLLWREFFYTAATNNPRFDRMEG 321 Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK- 363 P +I W+++ L W + TGFP IDA M QL GW+H+ R A FL + Sbjct: 322 NPIC---IQIPWDRNPEALAKWAEAKTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRG 378 Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423 DL V W G F LLD D + N G W W + + +F + P G+R DP G Sbjct: 379 DLWVSWESGVRVFDELLLDADFSVNAGSWMWLSCSAFFQQ-FFHCYCPVGFGRRTDPSGD 437 Query: 424 FIRHWLPELNNVPTQYIHAPHSWLD------KNDLSLNYPLPIVDHKKACHHTLNQ 473 +IR +LP+L P++YI+ P + + K + ++YP PIV+H + + + Sbjct: 438 YIRRYLPKLKAFPSRYIYEPWNAPEAVQKAAKCIIGVDYPRPIVNHAETSRLNIER 493 >gi|302745160|gb|ADL62683.1| cryptochrome 3 [Phreatichthys andruzzii] Length = 475 Score = 127 bits (319), Expect = 4e-27, Method: Compositional matrix adjust. Identities = 89/270 (32%), Positives = 130/270 (48%), Gaps = 19/270 (7%) Query: 211 GEQNALHILRKFCKEK--VYYYVEQRDIPA---IQGTSQLSPYLSIGVLSPRQCWNRLKE 265 GE A+ L K K V + R I A + LSPYL G LS R + L+E Sbjct: 191 GETEAMERLNKHLDRKGWVANFERPRIITAQSLFASPTGLSPYLRFGCLSCRVFYYNLRE 250 Query: 266 EFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSV--CMGKPFIPWTEKIEWNKDSHLL 323 F+ L + S S +L+WREF+ P+ G P +I W+ + L Sbjct: 251 LFMKLR-RRSSPPLSLFGQLLWREFFYTAGTNNPNFDRMEGNPIC---VQIPWDHNPEAL 306 Query: 324 QAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLD 382 W +G TGFP IDA M QL GW+H+ R A FL + DL + W G + F LLD Sbjct: 307 AKWAEGRTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWISWESGMKVFEELLLD 366 Query: 383 GDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIH- 441 D + N G W W + + +F + P G+R DP G +IR ++P+L + P YI+ Sbjct: 367 ADWSVNAGSWMWLSCSAFFQ-QFFHCYCPVGFGRRTDPSGDYIRRYIPKLKDYPNCYIYE 425 Query: 442 ---APHSWLDKND--LSLNYPLPIVDHKKA 466 AP S + + ++YP P+++H ++ Sbjct: 426 PWNAPESVQKAANCIVGVDYPKPMINHAES 455 >gi|313200806|ref|YP_004039464.1| cryptochrome, dash family [Methylovorus sp. MP688] gi|312440122|gb|ADQ84228.1| cryptochrome, DASH family [Methylovorus sp. MP688] Length = 467 Score = 127 bits (319), Expect = 5e-27, Method: Compositional matrix adjust. Identities = 94/301 (31%), Positives = 144/301 (47%), Gaps = 42/301 (13%) Query: 157 VYTPFRKALIQNLVQADLRSLPVPAIRLTGPV--------TPSNIPRFFDYPFQAIDP-- 206 +T FR AL + VQA + P+P+I+ P+ PS + A +P Sbjct: 176 TFTTFRHALERGHVQA---ARPLPSIKQLPPLPSHALLNAIPSEVASDGTDHAMASEPWP 232 Query: 207 -----MFPIG-------EQNALHILRKFCKEKV--YYYVEQRDIPAIQGTSQLSPYLSIG 252 FP+G EQ AL L+++C+ ++ Y + + + +S+ SP+L+ G Sbjct: 233 DDARSAFPLGSSGFDGSEQAALQHLQQYCQRRLPHSYKSTRNGLIGVDYSSKWSPWLATG 292 Query: 253 VLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYR-----HLMAFYPSVCMGKPF 307 LS RQ W + + F +S + W EL+WR+ +R H Y + +G+ Sbjct: 293 ALSARQAWAAI-QAFEAEHGANESTYWLWF-ELLWRDHFRWLHFKHGNRLYRARGLGEAP 350 Query: 308 IPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLV 367 +P + D W +G TG P IDA MR+L G++ NR+R AS+L+ DL Sbjct: 351 VP-------SHDPDHFARWCRGETGQPFIDAGMRELAATGYLSNRMRQNVASYLIHDLGC 403 Query: 368 DWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRH 427 DWR G +F SQLLD D+ SN G W + + G D R FNP Q + +D G++ Sbjct: 404 DWRAGAAWFESQLLDYDVYSNQGNWLYLSGRGTDPR-QGRRFNPDKQAQDYDADGSYRAL 462 Query: 428 W 428 W Sbjct: 463 W 463 >gi|302745154|gb|ADL62680.1| criptochrome 1b [Phreatichthys andruzzii] Length = 564 Score = 127 bits (318), Expect = 5e-27, Method: Compositional matrix adjust. Identities = 93/276 (33%), Positives = 134/276 (48%), Gaps = 24/276 (8%) Query: 207 MFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS------QLSPYLSIGVLSPRQCW 260 ++P GE AL L + + K + V + P + S LSPYL G LS R + Sbjct: 166 VWPGGETEALTRLERHLERKAW--VANFERPRMNANSLLASPTGLSPYLRFGCLSCRLFY 223 Query: 261 NRLKEEFVDLLIKPKSGAF---SWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWN 317 +L DL K K + S +L+WREF+ P + F P +I W+ Sbjct: 224 FKL----TDLYRKVKKNSLPPLSLYGQLLWREFFYTAATNNPHFDKME-FNPICVQIPWD 278 Query: 318 KDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYF 376 ++ L W +G TGFP IDA M QL GW+H+ R A FL + DL + W G + F Sbjct: 279 RNPEALAKWAEGRTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWISWEEGMKVF 338 Query: 377 MSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVP 436 LLD D + N G W W S + +F + P G+R DP G +IR +LP L P Sbjct: 339 EELLLDADWSVNAGSWMW-LSCSSFFQQFFHCYCPVGFGRRTDPNGDYIRRYLPILRGFP 397 Query: 437 TQYIH----APHSW--LDKNDLSLNYPLPIVDHKKA 466 ++I+ AP S + K + ++YP P+V+H +A Sbjct: 398 AKFIYDPWNAPESVQKVAKCIIGVHYPKPMVNHAEA 433 >gi|260778085|ref|ZP_05886978.1| deoxyribodipyrimidine photolyase single-strand-specific [Vibrio coralliilyticus ATCC BAA-450] gi|260606098|gb|EEX32383.1| deoxyribodipyrimidine photolyase single-strand-specific [Vibrio coralliilyticus ATCC BAA-450] Length = 440 Score = 127 bits (318), Expect = 5e-27, Method: Compositional matrix adjust. Identities = 122/458 (26%), Positives = 203/458 (44%), Gaps = 62/458 (13%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQW-----RQHGISARQSHFI-- 61 V L W DLRI DN L+ A D+ + + +++ ++ + + + F+ Sbjct: 5 VGLYWFTCDLRIQDNPLLWQASCEVDSLLCVYCLPQMDRYLVRYSQEQSLGSERLAFLQQ 64 Query: 62 -YASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRR- 119 A L Q +++ QK +VF D ++ L+ + VT + + +NE Sbjct: 65 SVACLSQSLENMGQKLLVFD-------DRPLDVLNRFIQDYGVTHFYCDLFSGVNEQSVV 117 Query: 120 DKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNL---VQADLRS 176 D+L +L + C + L + ++ +T FRK +++L V + L + Sbjct: 118 DRL--SQLHSDLTCIQEPVNTLFSQRLLPFTLGELPSTFTQFRKQ-VEHLPIGVDSSLSA 174 Query: 177 LPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNAL-HILRKFCKEKVYYYVEQR- 234 LP P ++ + + +F GE L H F +Y + R Sbjct: 175 LPEPPAQVISTLNMEEVSC----------QLFAGGETLGLAHCSGYFATSLASHYKQTRN 224 Query: 235 DIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFS---WLN-ELIWREF 290 ++ +++ SP+L++G LSP++ + L+E + + GA W+ EL+WRE+ Sbjct: 225 ELDGFDFSTKFSPWLAVGCLSPKRIFVLLQE------YEQREGANDSTYWIFFELLWREY 278 Query: 291 Y--------RHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQ 342 + R L F K P T S+ Q WK G T +PI++A M Q Sbjct: 279 FHWYGKLWGRRLFKFSGL----KDATPLTSFY-----SYRFQQWKHGETQYPIVNACMNQ 329 Query: 343 LNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDS 402 L G+M NR R + AS L+ +L +DWR G YF +QL+D D+ASN G WQ+ A G D Sbjct: 330 LKATGYMSNRGRQLVASCLIHELGLDWRYGAAYFETQLVDYDVASNWGNWQYLAGVGADP 389 Query: 403 VPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYI 440 R FN Q + +DP FI W +P+ ++ Sbjct: 390 RDS-RRFNLAKQTEMYDPDKVFIERWHGNKVIIPSDHV 426 >gi|160334828|gb|ABX24822.1| cryptochrome 1 [Capsella bursa-pastoris] gi|160334846|gb|ABX24831.1| cryptochrome 1 [Capsella bursa-pastoris] gi|160334856|gb|ABX24836.1| cryptochrome 1 [Capsella bursa-pastoris] gi|160334862|gb|ABX24839.1| cryptochrome 1 [Capsella bursa-pastoris] gi|160334910|gb|ABX24863.1| cryptochrome 1 [Capsella bursa-pastoris] gi|160334912|gb|ABX24864.1| cryptochrome 1 [Capsella bursa-pastoris] gi|160334914|gb|ABX24865.1| cryptochrome 1 [Capsella bursa-pastoris] gi|160334916|gb|ABX24866.1| cryptochrome 1 [Capsella bursa-pastoris] gi|160334920|gb|ABX24868.1| cryptochrome 1 [Capsella bursa-pastoris] gi|260765937|gb|ACX49999.1| cryptochrome 1 [Capsella bursa-pastoris] gi|260765939|gb|ACX50000.1| cryptochrome 1 [Capsella bursa-pastoris] Length = 155 Score = 127 bits (318), Expect = 5e-27, Method: Compositional matrix adjust. Identities = 71/152 (46%), Positives = 96/152 (63%), Gaps = 8/152 (5%) Query: 323 LQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLD 382 + W+QG TG+P++DA MR+L GW+H+R+R++ +SF VK L + WR G +YF LLD Sbjct: 3 FKGWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFVKVLQLPWRWGMKYFWDTLLD 62 Query: 383 GDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIH- 441 DL S+ GWQ+ T DS + RI NP +G +FDP G ++R WLPEL+ +PT +IH Sbjct: 63 ADLESDALGWQYITGTLPDSREFDRIDNPQFEGYKFDPNGEYVRRWLPELSRLPTDWIHH 122 Query: 442 ---APHSWLDKNDLSL--NYPLPIV--DHKKA 466 AP S L + L NYP PIV D KA Sbjct: 123 PWNAPESVLQAAGIELGSNYPRPIVGLDEAKA 154 >gi|229529162|ref|ZP_04418552.1| deoxyribodipyrimidine photolyase single-strand-specific [Vibrio cholerae 12129(1)] gi|229332936|gb|EEN98422.1| deoxyribodipyrimidine photolyase single-strand-specific [Vibrio cholerae 12129(1)] Length = 461 Score = 127 bits (318), Expect = 5e-27, Method: Compositional matrix adjust. Identities = 123/439 (28%), Positives = 182/439 (41%), Gaps = 45/439 (10%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKV-------IAVFIATPEQWRQHGISARQSHFI 61 + L W NDLR+ DN L A D + I F+A Q Q G + ++ F+ Sbjct: 5 IGLYWFTNDLRVNDNPLLEQASQQVDRLICLYCYPSITPFLARYAQQTQWGEAKKR--FL 62 Query: 62 YASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDK 121 +L + SLS G W+ Q + L Q EI ++ D Sbjct: 63 NQTLADLDHSLSTLGQKL-------------WVTPLLPYQALRHLL--TQVEITDIYVDA 107 Query: 122 LLEK-------RLQHRVICKSFDDSVL--LPPGSILNHALQ-MYKVYTPFRKALIQNLVQ 171 + R+ C L L L AL+ + +T FRK V+ Sbjct: 108 MAGSDERQAIARIHQDFSCVHIHQQALHSLLSEPQLPFALEALPSTFTQFRKQ-----VE 162 Query: 172 ADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNAL-HILRKFCKEKVYYY 230 S P+ R+ P+ D + F GEQ L H F Y Sbjct: 163 TLSLSAPMGYPRVLPPIEQGWQLPLLDIVAEPNHSAFIGGEQAGLTHCQNYFSSMLPSCY 222 Query: 231 VEQRD-IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWRE 289 E R+ + + +++ SP+L++G +SP+ + L+ + + + EL+WRE Sbjct: 223 KETRNGLDGMDYSTKFSPWLALGAVSPKTIYAMLQR--YEAVHGANDSTYWIFFELLWRE 280 Query: 290 FYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWM 349 ++ Y + I + + LQ WK G T FPI++A MRQLN G+M Sbjct: 281 YFYWYARRYGAKLFRFSGIGEKKPLTSFYAQRFLQ-WKHGVTPFPIVNACMRQLNQTGYM 339 Query: 350 HNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIF 409 NR R + AS LV +L +DWR G YF +QL+D D+ SN G WQ+ A G D R F Sbjct: 340 SNRGRQLVASCLVHELGLDWRYGAAYFETQLMDYDVGSNWGNWQYLAGVGADPRGS-RRF 398 Query: 410 NPTIQGKRFDPQGTFIRHW 428 N Q +DP+G F+ W Sbjct: 399 NLEKQAHTYDPEGEFVAKW 417 >gi|19772572|gb|AAL46564.1| cryptochrome 2 [Gallus gallus] Length = 531 Score = 127 bits (318), Expect = 5e-27, Method: Compositional matrix adjust. Identities = 89/286 (31%), Positives = 135/286 (47%), Gaps = 23/286 (8%) Query: 197 FDYPFQAIDP-MFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS------QLSPYL 249 +P + P ++ GE AL L K + K + V + P + S LSPYL Sbjct: 156 LGFPTDGLAPAVWQGGETEALARLDKHLERKAW--VANYERPRMNANSLLASPTGLSPYL 213 Query: 250 SIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSV--CMGKPF 307 G LS R + RL E + + + + S +L+WREF+ P G P Sbjct: 214 RFGCLSCRLFYYRLWELYKKVK-RNSTPPLSLYGQLLWREFFYTAATNNPKFDRMEGNPI 272 Query: 308 IPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK-DLL 366 +I W+K+ L W +G TGFP IDA M QL GW+H+ R A FL + DL Sbjct: 273 CI---QIPWDKNPEALAKWAEGKTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLW 329 Query: 367 VDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIR 426 + W G F LLD D + N G W W + + +F + P G+R DP G +++ Sbjct: 330 ISWESGVRVFDELLLDADFSVNAGSWMWLSCSAFFQQ-FFHCYCPVGFGRRTDPSGDYVK 388 Query: 427 HWLPELNNVPTQYIHAPHSWLD------KNDLSLNYPLPIVDHKKA 466 +LP+L P++YI+ P + + K + ++YP P+V+H + Sbjct: 389 RYLPKLKGFPSRYIYEPWNAPESVQKAAKCIIGVDYPKPMVNHAET 434 >gi|321471119|gb|EFX82092.1| CRY-M [Daphnia pulex] Length = 553 Score = 126 bits (317), Expect = 6e-27, Method: Compositional matrix adjust. Identities = 129/487 (26%), Positives = 197/487 (40%), Gaps = 58/487 (11%) Query: 13 WLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ--- 69 W R LR+ DN +L + +FI P + + F+ SL + Sbjct: 16 WFRKGLRLHDNPSLKDGLKGC-STYRCIFILDPWFAGSSNVDINKWRFLLESLEDLDQNL 74 Query: 70 KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH 129 + L+ + V + + ++ CL F VR ++ Sbjct: 75 RKLNSRLFVIRGQPAGVLPKLFKEWETTCL------TFEEDPEPFGRVRDQNII------ 122 Query: 130 RVICKSFDDSVLLPPGSILNHALQMYKV---YTPFRKALIQNLVQADLRSLPVPAIRLT- 185 +CK F+ V+ L H ++ + P QN++ A + + P P +T Sbjct: 123 -TMCKDFNIEVITRASHTLYHPQKIIEKNGGKAPLTYRQFQNII-ASVDAPPPPESDITF 180 Query: 186 -------GPVTPS-----NIPRFFDYPFQAIDPMFPI----GEQNALHILRKFCKEK--V 227 P+ S ++P + F D + P GE AL L + + K V Sbjct: 181 ESIGRGYTPMDESMDDRFSVPTLEELGFDT-DGLMPAVWHGGETEALTRLERHLERKAWV 239 Query: 228 YYYVEQRDIPAIQGTSQ--LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNEL 285 + + P SQ LSPYL G LS R +L + IK S ++ Sbjct: 240 ASFGRPKMTPQSLLASQTGLSPYLRFGCLSVRLFHQQLTNLYKK--IKKAQPPLSLHGQV 297 Query: 286 IWREFYRHLMAFYPSV--CMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQL 343 +WREF+ P+ +G P +I W+ ++ L W G TGFP IDA M QL Sbjct: 298 LWREFFYCAATNNPNFDKMIGNPIC---VQIPWDSNAEALAKWANGQTGFPWIDAIMTQL 354 Query: 344 NTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDS 402 GW+H+ R A FL + DL + W G + F LLD D + N G W W S + Sbjct: 355 REEGWIHHLARHAVACFLTRGDLWISWEEGMKVFEELLLDADWSVNAGTWMW-LSCSSFF 413 Query: 403 VPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLD------KNDLSLNY 456 +F + P G++ DP G FI+ + P L N P QYIH P + + K + +Y Sbjct: 414 HQFFHCYCPVRFGRKVDPNGDFIKKYQPVLKNFPLQYIHEPWNAPESVQRAAKCVIGKDY 473 Query: 457 PLPIVDH 463 PLP+V+H Sbjct: 474 PLPMVNH 480 >gi|302745156|gb|ADL62681.1| criptochrome 2a [Phreatichthys andruzzii] Length = 488 Score = 126 bits (317), Expect = 6e-27, Method: Compositional matrix adjust. Identities = 90/275 (32%), Positives = 131/275 (47%), Gaps = 22/275 (8%) Query: 207 MFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS------QLSPYLSIGVLSPRQCW 260 ++P GE AL + + + K + V + P + S LSPYL G LS R + Sbjct: 61 VWPGGETEALTRIERHLERKAW--VANFERPRMNANSLLASPTGLSPYLRFGCLSCRLFY 118 Query: 261 NRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSV--CMGKPFIPWTEKIEWNK 318 +L + + + K + S +L+WREF+ P G P +I W+K Sbjct: 119 FKLTDLYRKV-KKTNTPPLSLYGQLLWREFFYTAATSNPRFDKMEGNPIC---VRIPWDK 174 Query: 319 DSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFM 377 + L W + TGFP IDA M QL GW+H+ R A FL + DL + W G + F Sbjct: 175 NPEALAKWAEAKTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWISWEEGMKVFE 234 Query: 378 SQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPT 437 LLD D + N G W W S + +F + P G+R DP G FIR +LP L P Sbjct: 235 ELLLDADWSVNAGSWMW-LSCSSFFQQFFHCYCPVGFGRRTDPNGDFIRRYLPILRGFPA 293 Query: 438 QYIHAPHSWLD------KNDLSLNYPLPIVDHKKA 466 +YI+ P + D K + ++YP P+V+H +A Sbjct: 294 KYIYDPWNAPDSVQAAAKCIIGVHYPKPMVNHAEA 328 >gi|330448317|ref|ZP_08311965.1| DNA photolyase family protein [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] gi|328492508|dbj|GAA06462.1| DNA photolyase family protein [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] Length = 491 Score = 126 bits (317), Expect = 6e-27, Method: Compositional matrix adjust. Identities = 132/478 (27%), Positives = 208/478 (43%), Gaps = 45/478 (9%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 V++VWL+ DLR++D++AL A NSD V+ ++I P S R FI+ SL + Sbjct: 4 VNVVWLKRDLRLSDHQALSVAA-NSDLPVMLIYIMEPMLLSDPHYSERHWRFIWQSLQDI 62 Query: 69 QKSLSQ-KGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127 L+ VF +H +++E LD + LF ++ E+ E+ L Sbjct: 63 NHQLAGVNSQVFIFH-----GNAVECLDKLMHHFPINALFSHQ-----EIGLGCTFERDL 112 Query: 128 QHRVIC-KSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 + C K G+++ A K T + K +++A L S+ + + Sbjct: 113 NIKAWCDKQQIQWHEFQQGAVIRGA----KNRTNWDKHW-NRVMRAPLYSVNLDKVNWVS 167 Query: 187 PVTPSNIPRFFDYP----FQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGT 242 ++P + P + + M G AL L F + Y P T Sbjct: 168 -ISPDQLADMLFSPPKSWCERVQGMQTGGSTLALQTLDDFFSRRGKEYYRSISSPTASRT 226 Query: 243 --SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPS 300 S+LSPYL+ G +S RQ + ++ + + A S + L W + P Sbjct: 227 ACSRLSPYLAWGNISLRQVYQQVLAHWNVKGFRRSLIALS--SRLHWHCHFIQKFESEPD 284 Query: 301 V---CMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMIT 357 + CM + + + +KD L AWK+G TG P+IDA MR L G+++ R+R + Sbjct: 285 IEFFCMNRTYDRLLTQY-CSKDELKLNAWKEGNTGIPLIDACMRCLYHTGYINFRMRSML 343 Query: 358 ASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKR 417 SFL L +DWR G + LD + + +Q A G + RI+NPT Q + Sbjct: 344 VSFLTHHLNIDWRDGVTHLAQLFLDFEPGIHYSQFQMQA--GVTGINTIRIYNPTKQAQE 401 Query: 418 FDPQGTFIRHWLPELNNVPTQYIHAPHSW---------LDKNDLSLNYPLPIVDHKKA 466 DP G FI W+PEL NVP + P + LD N L+ PIVD +++ Sbjct: 402 HDPDGKFIHKWVPELANVPAPLLFEPWTLTELKIVMYQLDNNSCYLS---PIVDLERS 456 >gi|156546843|ref|XP_001606405.1| PREDICTED: similar to cryptochrome 2 [Nasonia vitripennis] Length = 648 Score = 126 bits (317), Expect = 7e-27, Method: Compositional matrix adjust. Identities = 96/294 (32%), Positives = 133/294 (45%), Gaps = 28/294 (9%) Query: 192 NIPRFFDYPFQAIDPMFPI---GEQNALHILRKFCKEKVYY-------YVEQRDIPAIQG 241 +P + F M P+ GE AL L + + K + Q +P+ G Sbjct: 272 GVPTLEELGFDTEGLMAPVWVGGETEALARLERHLERKAWVASFGRPKMTPQSLLPSQTG 331 Query: 242 TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSV 301 LSPYL G LS R + +L + + IK S +L+WREF+ P+ Sbjct: 332 ---LSPYLRFGCLSTRLFYYQLADLYKK--IKKTIPPLSLHGQLLWREFFYCAATNNPNF 386 Query: 302 --CMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITAS 359 G P +I W+K+ L W G TGFP IDA M QL GW+H R A Sbjct: 387 DRMHGNPIC---VQIPWDKNVVALSKWANGQTGFPWIDAIMTQLREEGWIHQLARHAVAC 443 Query: 360 FLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRF 418 FL + DL + W G + F LLD D + N G W W S + +F + P G++ Sbjct: 444 FLTRGDLWISWEEGMKVFDELLLDADWSINAGMWMW-LSCSSFFQQFFHCYCPVRFGRKA 502 Query: 419 DPQGTFIRHWLPELNNVPTQYIHAPHSW------LDKNDLSLNYPLPIVDHKKA 466 DP G +IR +LP L N PT+YIH P + K + Y LP+V+H K+ Sbjct: 503 DPNGDYIRRYLPVLKNFPTRYIHEPWNAPLSVQRAAKCIIGQEYALPMVNHSKS 556 >gi|327484373|gb|AEA78780.1| Deoxyribodipyrimidine photolyase, single-strand- specific [Vibrio cholerae LMA3894-4] Length = 462 Score = 126 bits (317), Expect = 7e-27, Method: Compositional matrix adjust. Identities = 121/430 (28%), Positives = 187/430 (43%), Gaps = 26/430 (6%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKV-------IAVFIATPEQWRQHGISARQSHFI 61 + L W NDLR+ DN L A D + I F+A Q Q G + ++ F+ Sbjct: 5 IGLYWFTNDLRVNDNPLLEQASQQVDRLICLYCYPSITPFLARYAQQTQWGEAKKR--FL 62 Query: 62 YASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDK 121 +L + SLS G + + L Q +T ++ + +E + Sbjct: 63 NQTLADLDHSLSTLGQKLWVTPLLPY----QALRHLLTQVEITDIYVDAMAGSDERQAIA 118 Query: 122 LLEKRLQHRVICKSFDDSVLLPPGSILNHALQ-MYKVYTPFRKALIQNLVQADLRSLPVP 180 + + I + S+L P L AL+ + +T FRK ++ L L S P+ Sbjct: 119 RIHQDFSSVHIHQQALHSLLSEPQ--LPFALEALPSTFTQFRKQ-VETL---SLSSAPIG 172 Query: 181 AIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNAL-HILRKFCKEKVYYYVEQRD-IPA 238 R+ P+ D + F GEQ L H F Y E R+ + Sbjct: 173 YPRVLPPIEQGWQLPLMDIVTEPNHSAFVGGEQAGLTHCQNYFSSMLPSRYKETRNGLDG 232 Query: 239 IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFY 298 + +++ SP+L++G +SP+ + L+ + + + EL+WRE++ Y Sbjct: 233 MDYSTKFSPWLALGAVSPKTIYAILQR--YEAVHGANDSTYWIFFELLWREYFYWYARRY 290 Query: 299 PSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITA 358 + I + + LQ WK G T FPI++A MRQLN G+M NR R + A Sbjct: 291 GAKLFRFSGIGEKKPLTSFYAQRFLQ-WKLGDTPFPIVNACMRQLNQTGYMSNRGRQLVA 349 Query: 359 SFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRF 418 S LV +L +DWR G YF +QL+D D+ SN G WQ+ A G D R FN Q + Sbjct: 350 SCLVHELGLDWRYGAAYFETQLMDYDVGSNWGNWQYLAGVGADPRGS-RQFNLEKQAHTY 408 Query: 419 DPQGTFIRHW 428 DP+G F+ W Sbjct: 409 DPKGEFVAKW 418 >gi|311696907|gb|ADP99780.1| deoxyribodipyrimidine photolyase [marine bacterium HP15] Length = 440 Score = 126 bits (317), Expect = 7e-27, Method: Compositional matrix adjust. Identities = 115/432 (26%), Positives = 195/432 (45%), Gaps = 29/432 (6%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHG------ISARQSHFIYAS 64 L W DLR+ DN +L AA + ++ +++ P +W G + + F++ S Sbjct: 4 LYWFTRDLRLHDNASLLAASKSD--MLLCLYVVDP-RWFAPGPLQSKAMGDHRWRFLWQS 60 Query: 65 LLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLE 124 L+ +++SL G F + + + ++ +R E + + ++ Sbjct: 61 LMALERSLRPLGQRLHI----AFGEPETVIPQLAHAHSIERVVRSRLPGTQEAGQWQAIK 116 Query: 125 KRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL 184 RL + + + F+ L GS+ ++ ++ FRK + + D S + L Sbjct: 117 DRLP-KAVFQQFETLSLFTEGSLPMALEELPDTFSQFRKQVEKT---GDRCSERLRIRTL 172 Query: 185 TGPVTPSNIPRFFDYPFQAI-DPMFPI----GEQNALHILRKFC--KEKVYYYVEQRD-I 236 T P P I +P+ P+ GE L L++F + Y E R+ + Sbjct: 173 TALPPPPGFPEDNRGDCPPIPEPVHPLQFMGGEAAGLARLQEFLYGNHSIDRYKETRNAL 232 Query: 237 PAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMA 296 +S+ SP+L+ G LS R+ + E + K +S + W EL+WRE++ + A Sbjct: 233 DTWDASSKFSPWLANGCLSVREVAETITE-YEASETKNESTYWLWF-ELLWREYF-YWYA 289 Query: 297 FYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMI 356 + + ++ H +AW QG T +PI++AAM QL G+M NR R + Sbjct: 290 LKHGANLFRRDGVQRKRRHGTFYGHRFKAWCQGNTEYPIVNAAMNQLRETGYMSNRARQL 349 Query: 357 TASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGK 416 AS + +L +DWR G +F QL+D D+ SN G WQ+ A G D R FN Q + Sbjct: 350 VASCFINELGLDWRYGAAWFEEQLIDYDVGSNYGNWQYLAGVGADPRG-LRQFNLEKQTQ 408 Query: 417 RFDPQGTFIRHW 428 ++DP GTFI W Sbjct: 409 QYDPTGTFIDRW 420 >gi|44843614|emb|CAE54426.1| sCRY2S protein [Spalax judaei] Length = 591 Score = 126 bits (317), Expect = 8e-27, Method: Compositional matrix adjust. Identities = 136/498 (27%), Positives = 206/498 (41%), Gaps = 65/498 (13%) Query: 8 SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67 SVH W R LR+ DN +L AA + V V+I P + + F+ SL Sbjct: 22 SVH--WFRKGLRLHDNPSLLAAVRGARC-VRCVYILDPWFAASSSVGINRWRFLLQSLED 78 Query: 68 VQKSLSQ---KGIVFQYHQCSNFDDSI-EWLDSYCLQQRVTKLFYNRQYEINEVRRDKLL 123 + SL + + V + F EW VT+L + E RD + Sbjct: 79 LDTSLRKLNSRLFVVRGQPADVFPRLFKEW--------GVTRLTFEYDSEPFGKERDAAI 130 Query: 124 EKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLV-QADLRSLPVPAI 182 K + + ++S L L+ + + P Q ++ + +L PV A+ Sbjct: 131 MKMAKEAGVEVVTENSHTL---YDLDRIIDLNGQKPPLTYKRFQAIISRMELPKKPVVAV 187 Query: 183 RLTGPVTPS-------------NIPRF--FDYPFQAIDP-MFPIGEQNALHILRKFCKEK 226 T S +P +P + + P ++ GE AL L K + K Sbjct: 188 --TSQQMESCRAEIQDNHDDTYGVPSLEELGFPTEGLGPAVWQGGETEALARLDKHLERK 245 Query: 227 VYYYVEQRDIPAIQGTS------QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGA-- 278 + V + P + S LSPYL G LS R + RL DL K K + Sbjct: 246 AW--VANYERPRMNANSLLASPTGLSPYLRFGCLSCRLFYYRL----WDLYKKVKRNSTP 299 Query: 279 -FSWLNELIWREFYRHLMAFYPSV--CMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPI 335 S +L+WREF+ P G P +I W+++ L W +G TGFP Sbjct: 300 PLSLFGQLLWREFFYTAATNNPRFDRMEGNPIC---IQIPWDRNPEALAKWAEGKTGFPW 356 Query: 336 IDAAMRQLNTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQW 394 IDA M QL GW+H+ R A F + DL V W G F LLD D + N G W W Sbjct: 357 IDAIMTQLRQEGWIHHLARHAVACFPTRGDLWVSWESGVRVFDELLLDADFSVNAGSWMW 416 Query: 395 AASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLD------ 448 + + +F + P G+R DP G +IR +LP+L P++YI+ P + + Sbjct: 417 LSCSAFFQQ-FFHCYCPVGFGRRTDPSGDYIRRYLPKLKGFPSRYIYEPWNAPESIQKAA 475 Query: 449 KNDLSLNYPLPIVDHKKA 466 + + ++YP P+V+H + Sbjct: 476 RCIIGVDYPRPMVNHAET 493 >gi|260765945|gb|ACX50003.1| cryptochrome 1 [Capsella bursa-pastoris] Length = 155 Score = 126 bits (317), Expect = 8e-27, Method: Compositional matrix adjust. Identities = 71/152 (46%), Positives = 96/152 (63%), Gaps = 8/152 (5%) Query: 323 LQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLD 382 + W+QG TG+P++DA MR+L GW+H+R+R++ +SF VK L + WR G +YF LLD Sbjct: 3 FKXWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFVKVLQLPWRWGMKYFWDTLLD 62 Query: 383 GDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIH- 441 DL S+ GWQ+ T DS + RI NP +G +FDP G ++R WLPEL+ +PT +IH Sbjct: 63 ADLESDALGWQYITGTLPDSREFDRIDNPQFEGYKFDPNGEYVRRWLPELSRLPTDWIHH 122 Query: 442 ---APHSWLDKNDLSL--NYPLPIV--DHKKA 466 AP S L + L NYP PIV D KA Sbjct: 123 PWNAPESVLQAAGIELGSNYPRPIVGLDEAKA 154 >gi|307944813|ref|ZP_07660151.1| deoxyribodipyrimidine photo-lyase [Roseibium sp. TrichSKD4] gi|307772027|gb|EFO31250.1| deoxyribodipyrimidine photo-lyase [Roseibium sp. TrichSKD4] Length = 527 Score = 126 bits (317), Expect = 8e-27, Method: Compositional matrix adjust. Identities = 129/514 (25%), Positives = 197/514 (38%), Gaps = 93/514 (18%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 V +VW + DLR D+ L A V+ +++ P+ W Q +S R F+ SL+ + Sbjct: 11 VQIVWFKKDLRTYDHAPLLKAAQA--GPVLPLYVIEPKLWMQPDMSGRHFAFLKESLVDL 68 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLD---------------------SYCLQQRVTKLF 107 + L G+ DD I L ++ +RV+ Sbjct: 69 RDDLQGLGVRL----VLKVDDIIHVLTDLKSRHAIAALWSHEETGNGWTFARDKRVSAWC 124 Query: 108 YNRQYEINEVRRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQ 167 +E+R+ ++ +RL+ R D+V+ P I + + V P Q Sbjct: 125 RASGVHWHELRQTGVV-RRLKGRTGWARQWDTVMGDP--IAHRPQNIAAVLEPSDPFPSQ 181 Query: 168 NLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFC--KE 225 + + L P P R TG G Q AL L F + Sbjct: 182 H--ELGLNPDPCP-YRQTG------------------------GRQAALATLDSFLTRRG 214 Query: 226 KVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLN-- 283 + Y + A S+LSP+++ G LS R+ + L P G SW + Sbjct: 215 RPYQCAMSSPVTAFDACSRLSPHIAFGTLSLREITQATYDRQRHLKTNPLPGDRSWRSAM 274 Query: 284 -----ELIWREFYRHLMAFYPSVCMG---------KPFIPWTEKIEWNKDSHLLQAWKQG 329 L W + + P + +P +P D L QAWK G Sbjct: 275 RSFSGRLHWHCHFMQKLEDEPRLEFENLHQAYDGLRPSVP---------DETLFQAWKAG 325 Query: 330 YTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNN 389 TG P +DA MR L+ GWM+ R+R + + L +DWR + D + + Sbjct: 326 ETGLPFVDACMRALSATGWMNFRMRAMLVAVSSYHLWLDWREPGLHLARLFTDYEPGIH- 384 Query: 390 GGW-QWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLD 448 W Q +G + RI+NP QG DP G F+R W+PEL ++ Q+IH P W Sbjct: 385 --WPQVQMQSGTTGINTVRIYNPVKQGLDQDPDGVFVRRWVPELADIDAQHIHEP--WKA 440 Query: 449 KND---LSLNYPLPIVDHKKACHHTLNQYYAAKK 479 N L YP P+VDH A + +A +K Sbjct: 441 DNAGRVLGKRYPFPVVDHLSAAKEAREKVWAIRK 474 >gi|254224954|ref|ZP_04918569.1| RNA-binding cryptochrome Cry1 [Vibrio cholerae V51] gi|125622642|gb|EAZ50961.1| RNA-binding cryptochrome Cry1 [Vibrio cholerae V51] Length = 461 Score = 126 bits (316), Expect = 8e-27, Method: Compositional matrix adjust. Identities = 120/430 (27%), Positives = 185/430 (43%), Gaps = 27/430 (6%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKV-------IAVFIATPEQWRQHGISARQSHFI 61 + L W NDLR+ DN L A D + I F+A Q Q G + ++ F+ Sbjct: 5 IGLYWFTNDLRVNDNPLLEQASQQVDRLICLYCYPSITPFLARYAQQTQWGEAKKR--FL 62 Query: 62 YASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDK 121 +L + SLS G + + L Q +T ++ + +E + Sbjct: 63 NQTLADLDHSLSTLGQKLWVTPLLPY----QALRHLLTQVEITDIYVDAMAGSDERQAIA 118 Query: 122 LLEKRLQHRVICKSFDDSVLLPPGSILNHALQ-MYKVYTPFRKALIQNLVQADLRSLPVP 180 + + I + S+L P L AL+ + +T FRK V+ S P+ Sbjct: 119 RIHQDFSSVHIHQQALHSLLSEPQ--LPFALEALPSTFTQFRKQ-----VETLSLSAPMG 171 Query: 181 AIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNAL-HILRKFCKEKVYYYVEQRD-IPA 238 R+ P+ D + F GEQ L H F Y E R+ + Sbjct: 172 YPRVLPPIEQGWQLPLMDIVTEPNHSAFIGGEQAGLTHCQHYFSSMLPSCYKETRNGLDG 231 Query: 239 IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFY 298 + +++ SP+L++G +SP+ + L+ + + + EL+WRE++ Y Sbjct: 232 MDYSTKFSPWLALGAVSPKTIYAMLQR--YEAVHGANDSTYWIFFELLWREYFYWYARRY 289 Query: 299 PSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITA 358 + I + + LQ WK G T FPI++A MRQLN G+M NR R + A Sbjct: 290 GAKLFRFSGIGEKKPLTSFYAQRFLQ-WKHGETPFPIVNACMRQLNQTGYMSNRGRQLVA 348 Query: 359 SFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRF 418 S LV +L +DWR G YF +QL+D D+ SN G WQ+ A G D R FN Q + Sbjct: 349 SCLVHELGLDWRYGAAYFETQLMDYDVGSNWGNWQYLAGVGADPRGS-RQFNLAKQAHTY 407 Query: 419 DPQGTFIRHW 428 DP+G F+ W Sbjct: 408 DPKGEFVAKW 417 >gi|254431842|ref|ZP_05045545.1| deoxyribodipyrimidine photolyase [Cyanobium sp. PCC 7001] gi|197626295|gb|EDY38854.1| deoxyribodipyrimidine photolyase [Cyanobium sp. PCC 7001] Length = 554 Score = 126 bits (316), Expect = 9e-27, Method: Compositional matrix adjust. Identities = 129/459 (28%), Positives = 195/459 (42%), Gaps = 65/459 (14%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M + +VW R DLR+ D+ AL+ A S+ V+ +FI P + + + +L Sbjct: 1 MRLQVVWFRRDLRLGDHPALHQAA--SEGAVLPLFILDPALLQHPETGVARVGVLLDNLA 58 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 + L Q + W + V K Y + V ++++ + Sbjct: 59 ALDHELKQLASRLL----------VRWGEPAACLLSVVKA-YRADAVLAHVDSERIVGRV 107 Query: 127 LQHRVICKSFDDSVLL----PPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAI 182 RV + V L PPG + L Y Y F ++ LP P Sbjct: 108 RDARVQGQLQQAGVPLRWIEPPGGL--EELVPYPAYRRFWHGVMAA------EPLPAPGR 159 Query: 183 RLT-----GPVTPSNIPRFFDYPFQAID---PMFPIGEQNALHILRKFCKEKV---YYYV 231 LT G T + +P +D P P G AL L+ FC+++V YY+ Sbjct: 160 LLTPPPAAGESTAAAVPSL--EALGMVDDGKPRPPGGSAAALQRLQAFCRQEVSSRYYW- 216 Query: 232 EQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSG-AFSW---LNELIW 287 Q PA + +S +SPYL GVLS RQC + L + +G SW ++ L W Sbjct: 217 -QLSYPAARASSGISPYLKFGVLSHRQCLRAIAP-----LRRGDAGRQRSWRQLVSRLRW 270 Query: 288 REFYRHLMAFYPSVCMGKPFIPW----TEKIEWNKDSHLLQAWKQGYTGFPIIDAAMR-Q 342 + P + + +P W + + + + W++G TGFPI+DA R Sbjct: 271 GAGMAQRFRYLPQLEL-EPL--WRCHRDDAVLRDTQEEMYLRWQEGRTGFPIVDAVSRCL 327 Query: 343 LNTIGW--MHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTG- 399 L T GW ++ R R I ASFL +DWR G ++M LLDGD ++ +QWA G Sbjct: 328 LATGGWRDLNFRSRAIHASFLTNLCGIDWRYGALHYMRHLLDGDCPIDH--YQWAMQAGV 385 Query: 400 --NDSVPYFRIFNPT-IQGKRFDPQGTFIRHWLPELNNV 435 + + RI++P + R DP G FIR WLPEL + Sbjct: 386 TAGGTGAWTRIYHPGQVAVNRCDPHGVFIRRWLPELAEL 424 >gi|326920457|ref|XP_003206489.1| PREDICTED: cryptochrome-2 [Meleagris gallopavo] Length = 540 Score = 126 bits (316), Expect = 9e-27, Method: Compositional matrix adjust. Identities = 89/286 (31%), Positives = 135/286 (47%), Gaps = 23/286 (8%) Query: 197 FDYPFQAIDP-MFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS------QLSPYL 249 +P + P ++ GE AL L K + K + V + P + S LSPYL Sbjct: 165 LGFPTDGLAPAVWQGGETEALARLDKHLERKAW--VANYERPRMNANSLLASPTGLSPYL 222 Query: 250 SIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSV--CMGKPF 307 G LS R + RL E + + + + S +L+WREF+ P G P Sbjct: 223 RFGCLSCRLFYYRLWELYKKV-KRNSTPPLSLYGQLLWREFFYTAATNNPKFDRMEGNPI 281 Query: 308 IPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK-DLL 366 +I W+K+ L W +G TGFP IDA M QL GW+H+ R A FL + DL Sbjct: 282 ---CIQIPWDKNPEALAKWAEGKTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLW 338 Query: 367 VDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIR 426 + W G F LLD D + N G W W + + +F + P G+R DP G +++ Sbjct: 339 ISWESGVRVFDELLLDADFSVNAGSWMWLSCSAFFQQ-FFHCYCPVGFGRRTDPSGDYVK 397 Query: 427 HWLPELNNVPTQYIHAPHSWLD------KNDLSLNYPLPIVDHKKA 466 +LP+L P++YI+ P + + K + ++YP P+V+H + Sbjct: 398 RYLPKLKGFPSRYIYEPWNAPESVQKAAKCIIGVDYPKPMVNHAET 443 >gi|18858467|ref|NP_571867.1| cryptochrome 2b [Danio rerio] gi|8698590|dbj|BAA96849.1| cryptochrome 2b [Danio rerio] Length = 638 Score = 126 bits (316), Expect = 9e-27, Method: Compositional matrix adjust. Identities = 134/503 (26%), Positives = 213/503 (42%), Gaps = 68/503 (13%) Query: 7 MSVHLV-WLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASL 65 MSV+ V W R LR+ DN AL A + +D + V+ P + + F+ SL Sbjct: 1 MSVNSVHWFRKGLRLHDNPALLEALNGADT-LRCVYFLDPWFAGASNLGVNRWRFLLQSL 59 Query: 66 LQVQKSLSQKG---IVFQYHQCSNFDDSI-EWLDSYCLQQRVTKLFYNRQYEINEVRRDK 121 + SL + V + F EW +V++L + E RD Sbjct: 60 EDLDASLRKLNSCLFVIRGQPADIFPRLFKEW--------KVSRLTFEFDSEPFGKERDA 111 Query: 122 LLEKRLQHRVICKSFDDSVLLPPGSI--LNHALQMYKVYTPFRKALIQNLVQADLRSLPV 179 ++K + C++ + ++ ++ L+ +++ +P Q LV S+ Sbjct: 112 AIKK-----LACEAGVEVIVKISHTLYDLDRIIELNGGQSPLTYKRFQTLVS----SMEP 162 Query: 180 PAIRLTGP--------VTP--------SNIPRFFDYPF--QAIDP-MFPIGEQNALHILR 220 P L P VTP +P + F + + P ++P GE AL + Sbjct: 163 PDPPLASPDRGMMGKCVTPISENHRDKYGVPLLEELGFDTEGLAPAVWPGGESEALKRME 222 Query: 221 KFCKEKVYYYVEQRDIPAIQGTS------QLSPYLSIGVLSPR--QCWNRLKEEFVDLLI 272 + + E + P + + LSPYL G LS R C + + V + Sbjct: 223 RHLGPDSTAWQENFERPKMNASPLMASPLGLSPYLRFGCLSCRLFYCNSLSSTKKVKKNM 282 Query: 273 KPKSGAFSWLNELIWREFYRHLMAFYPSV--CMGKPFIPWTEKIEWNKDSHLLQAWKQGY 330 P + S ++++WREF+ P G P +I W++++ L W + Sbjct: 283 NP---SISLYDKILWREFFYTAATNNPRFDRMEGNPIC---IRIPWDRNAEALAKWAEAK 336 Query: 331 TGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNN 389 TGFP IDA M QL GW+H+ R A FL + DL + W G + F LLD D + N Sbjct: 337 TGFPWIDAIMMQLRQEGWIHHLARHAVACFLTRGDLWISWEEGMKVFEELLLDADWSVNA 396 Query: 390 GGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIH----APHS 445 G W S + +F + P G+R DP G FIR +LP L + P +YI+ APH Sbjct: 397 GSW-LCHSCSSFFQQFFHCYCPVGFGRRIDPNGDFIRRYLPVLRDFPAKYIYDPWNAPHD 455 Query: 446 --WLDKNDLSLNYPLPIVDHKKA 466 K + ++YP P+V+H +A Sbjct: 456 VQLAAKCAIGVDYPKPMVNHAEA 478 >gi|83816774|ref|YP_446431.1| deoxyribodipyrimidine photolyase, putative [Salinibacter ruber DSM 13855] gi|83758168|gb|ABC46281.1| deoxyribodipyrimidine photolyase, putative [Salinibacter ruber DSM 13855] Length = 537 Score = 126 bits (316), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 124/493 (25%), Positives = 211/493 (42%), Gaps = 43/493 (8%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 +VW + DLR+ D++ L A V+ +++A P R I +L+++ Sbjct: 49 TQIVWYKRDLRVGDHRPLAEAADR--GPVLPLYVAEPSIAAGADYHPRHWTLIREALIEL 106 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRV---TKLFYNRQYEINEVRRDKLLEK 125 + L+++G +C + +E L + R+ + R +E ++ RD Sbjct: 107 RARLAKRGQPLVV-RCGEMPEVLESLRATAGPLRLWAHEETGNQRTHERDQRVRDW---A 162 Query: 126 RLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185 R + V+ P A Q + ++ + LV P A++ Sbjct: 163 RAHEVPFTEVPSRGVVRGPHDRDEWADQ-------WEASMDRPLVH------PPDALQPV 209 Query: 186 GPVTPSNIPRFFDYPFQ-AIDPMFPIGEQNALHILRKFCKEK--VYYYVEQRDIPAIQGT 242 V P +P D + + + IGE A L F +E+ Y R PA Sbjct: 210 DSVAPGPMPSHADLGLRPSTAALQQIGEAEAHRTLDSFLRERGRSYRRAMSRPGPAQTEC 269 Query: 243 SQLSPYLSIGVLSPRQCWNRLK--EEFVDLLIKPKSGA-----FSWLNELIWREFYRHLM 295 S++S +L+ G +S R+ L+ +E + P + A S+ + L W + + Sbjct: 270 SRISVHLAYGTISLRRVVYELRRRQEELRGANGPDAAARRKALSSFDSRLHWHSHFTQKL 329 Query: 296 AFYPSVCMGKPFIPWTEKIEWNK-DSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLR 354 P + + +IP + + + D L AW G TGFP++DA MR L GW++ R+R Sbjct: 330 EDAPRI-ENESYIPAFDALRADDWDPALYDAWLHGRTGFPMVDACMRHLRATGWLNFRMR 388 Query: 355 MITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQ 414 + SF D +DWR + L D Q +G + RI+NP Q Sbjct: 389 AMLCSFAAYDCWLDWRRFAPTYGG--LMADYVPGIHYPQVQMQSGTTGINRVRIYNPVKQ 446 Query: 415 GKRFDPQGTFIRHWLPELNNV-PTQYIHAP--HSWLDKND----LSLNYPLPIVDHKKAC 467 GK DP GTFIR W+PEL+++ T Y+HAP S +++ + +YP +VDH A Sbjct: 447 GKEQDPDGTFIRRWVPELSHLDTTAYVHAPWKMSPIEQQAAGCVIGKDYPERVVDHNDAY 506 Query: 468 HHTLNQYYAAKKQ 480 HH + + +++ Sbjct: 507 HHAQDAIHELRQR 519 >gi|307107980|gb|EFN56221.1| hypothetical protein CHLNCDRAFT_51884 [Chlorella variabilis] Length = 1184 Score = 126 bits (316), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 94/287 (32%), Positives = 136/287 (47%), Gaps = 44/287 (15%) Query: 208 FPIGEQNALHILRKFCKEK---VYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLK 264 F GE AL LR + + Y+ + + +++L+P+L+ G LSPR + +K Sbjct: 247 FEGGESAALARLRYYLFDSNLVATYFDTRNGMLGGDYSTKLAPWLAHGCLSPRSVYYDIK 306 Query: 265 EEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWT---EKIEWNKDSH 321 KS + + ELIWR+FYR F+ K F+ + +W+ D+ Sbjct: 307 RYERQTGTANKS-TYWVVFELIWRDFYR----FFALKHGSKIFLEGGTTGQAPQWSNDAE 361 Query: 322 LLQAWKQGYTGFPIIDAAMRQLNTIG--------------------WMHNRLRMITASFL 361 L+ WK+G TG+P++DA R+L G +M NR R ASFL Sbjct: 362 ALRRWKEGRTGWPLVDANQRELRATGKSRPAGGRPMRIRALLLACGFMSNRGRQNVASFL 421 Query: 362 VKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQ 421 DL VDWR G ++F LLD D+ SN G W AA V F I T Q K +D + Sbjct: 422 ALDLGVDWRRGADWFEHLLLDYDVCSNWGNWVAAAGLTGGRVNKFNI---TKQSKDYDSE 478 Query: 422 GTFIRHWLPELNNVPTQYIHAPHSWLDKND--------LSLNYPLPI 460 G +IR W+PEL VP + IH P WL + + ++YP P+ Sbjct: 479 GQYIRTWVPELACVPARRIHEP--WLMSREEQAAAGVQIGVDYPAPL 523 >gi|294508369|ref|YP_003572427.1| deoxyribodipyrimidine photo-lyase [Salinibacter ruber M8] gi|294344697|emb|CBH25475.1| Deoxyribodipyrimidine photo-lyase [Salinibacter ruber M8] Length = 537 Score = 125 bits (315), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 122/493 (24%), Positives = 212/493 (43%), Gaps = 43/493 (8%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 +VW + DLR+ D++ L A V+ +++A P R I +L+++ Sbjct: 49 TQIVWYKRDLRVGDHRPLAEAADR--GPVLPLYVAEPSIAAGADYHPRHWTLIREALIEL 106 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRV---TKLFYNRQYEINEVRRDKLLEK 125 + L+++G +C + +E L + R+ + R +E ++ RD Sbjct: 107 RARLAKRGQPLIV-RCGEMPEVLESLRATAGPLRLWAHEETGNQRTHERDQRVRDWAR-- 163 Query: 126 RLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185 H V +P ++ + ++ ++ + LV P A++ Sbjct: 164 --AHEVPFTE------VPSRGVVRGPHDRDEWADRWKASMDRPLVH------PPDALQPV 209 Query: 186 GPVTPSNIPRFFDYPFQ-AIDPMFPIGEQNALHILRKFCKEKV--YYYVEQRDIPAIQGT 242 V P +P D + + + IGE A L F +E+ Y R PA Sbjct: 210 DSVAPGPMPSHADLGLRPSTAALQQIGEAEAHRTLDSFLRERGRNYRRAMSRPGPAQTEC 269 Query: 243 SQLSPYLSIGVLSPRQCWNRLK--EEFVDLLIKPKSGA-----FSWLNELIWREFYRHLM 295 S++S +L+ G +S R+ L+ +E + P + A S+ + L W + + Sbjct: 270 SRISVHLAYGTISLRRVVYELRRRQEELRGANGPDAAARRKALSSFDSRLHWHSHFTQKL 329 Query: 296 AFYPSVCMGKPFIPWTEKIEWNK-DSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLR 354 P + + +IP + + + D L AW G TGFP++DA MR L GW++ R+R Sbjct: 330 EDAPRI-ENESYIPAFDALRADDWDPALYDAWLHGRTGFPMVDACMRHLRATGWLNFRMR 388 Query: 355 MITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQ 414 + SF D +DWR + L D Q +G + RI+NP Q Sbjct: 389 AMLCSFAAYDCWLDWRRFAPTYGG--LMADYVPGIHYPQVQMQSGTTGINRVRIYNPVKQ 446 Query: 415 GKRFDPQGTFIRHWLPELNNV-PTQYIHAP--HSWLDKND----LSLNYPLPIVDHKKAC 467 GK DP GTFIR W+PEL+++ T Y+HAP S +++ + +YP +VDH A Sbjct: 447 GKEQDPDGTFIRRWVPELSHLDTTAYVHAPWKMSPIEQQAAGCVIGKDYPERVVDHNDAY 506 Query: 468 HHTLNQYYAAKKQ 480 HH + + +++ Sbjct: 507 HHAQDAIHELRQR 519 >gi|194380702|dbj|BAG58504.1| unnamed protein product [Homo sapiens] Length = 336 Score = 125 bits (315), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 79/236 (33%), Positives = 117/236 (49%), Gaps = 14/236 (5%) Query: 239 IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFY 298 + + LSPYL G LS R + RL + + + + + S +L+WREF+ Sbjct: 7 LASPTGLSPYLRFGCLSCRLFYYRLWDLYKKV-KRNSTPPLSLFGQLLWREFFYTAATNN 65 Query: 299 PSV--CMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMI 356 P G P +I W+++ L W +G TGFP IDA M QL GW+H+ R Sbjct: 66 PRFDRMEGNPI---CIQIPWDRNPEALAKWAEGKTGFPWIDAIMTQLRQEGWIHHLARHA 122 Query: 357 TASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQG 415 A FL + DL V W G F LLD D + N G W W + + +F + P G Sbjct: 123 VACFLTRGDLWVSWESGVRVFDELLLDADFSVNAGSWMWLSCSAFFQQ-FFHCYCPVGFG 181 Query: 416 KRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLD------KNDLSLNYPLPIVDHKK 465 +R DP G +IR +LP+L P++YI+ P + + K + ++YP PIV+H + Sbjct: 182 RRTDPSGDYIRRYLPKLKAFPSRYIYEPWNAPESIQKAAKCIIGVDYPRPIVNHAE 237 >gi|237654599|ref|YP_002890913.1| cryptochrome, DASH family [Thauera sp. MZ1T] gi|237625846|gb|ACR02536.1| cryptochrome, DASH family [Thauera sp. MZ1T] Length = 515 Score = 125 bits (315), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 126/490 (25%), Positives = 199/490 (40%), Gaps = 90/490 (18%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFI-----ATPEQWRQHGISARQSH---F 60 V + W RNDLR+ DN AL AC ++ +++ V+ P +W G R H F Sbjct: 5 VVIFWFRNDLRVGDNLALVEACASA-GRLLPVYCHDPSADAPTRW---GFVRRGPHRRAF 60 Query: 61 IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120 + A+L + +L +G Q + ++ I + Sbjct: 61 LEAALGDLDAALRARGSALL--QLNGAPRAV-----LPALAEAVGAAVVVCEAIAAPEEE 113 Query: 121 KLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKAL--------------- 165 L + K+ S LL P ++ A ++ KV+T FR+A+ Sbjct: 114 DELAALRAAGLKVKAIWQSTLLDPAALPFAAARLPKVFTAFRQAVESAGLQPPAPLPAPR 173 Query: 166 ------------IQNLVQADLRSLPVPAIRLTGPVT----------PSN--IPRFFDYPF 201 ++ DLR+ P + P P N + R + Sbjct: 174 TLPPWPPLDRPTRRSDASRDLRAGRSPGVAGRDPCAGRSPGVERAEPGNRDLRRSYGGSC 233 Query: 202 QAID----------------PMFPIGEQNAL-HILRKFCKEKVYYYVEQRD-IPAIQGTS 243 A D P F GE+ AL H+ R F ++ +Y R+ + + +S Sbjct: 234 GAADALTVEIGEQASFPWWQPAFAGGERAALAHLARYFAGDRPRHYKATRNGLSGVDFSS 293 Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYR--HLMA---FY 298 + SP+L+ G LS R L+ ++ P G++ EL+WR+++R HL Y Sbjct: 294 KFSPWLAQGALSARVALAALRRHEIEQ--GPSDGSYWLWFELLWRDYFRLLHLQQGRRLY 351 Query: 299 PSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITA 358 + + + + D+ AW+ G TG P IDA MR+L GW+ NR+R I A Sbjct: 352 RARGLNE------GAAQPAHDAAAFAAWRVGGTGHPFIDAGMRELAATGWLSNRMRQIVA 405 Query: 359 SFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRF 418 S+L+ DL DWR G +F +QL+D D+ SN G W + A G D R F+P Q + Sbjct: 406 SYLIHDLGCDWRAGAAWFEAQLVDYDVYSNQGNWLYIAGRGTDPR-GGRRFDPDRQAAMY 464 Query: 419 DPQGTFIRHW 428 D G + W Sbjct: 465 DADGAYRALW 474 >gi|37725009|gb|AAO23971.1| cryptochrome 2A [Pisum sativum] Length = 375 Score = 125 bits (315), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 103/373 (27%), Positives = 167/373 (44%), Gaps = 17/373 (4%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 +VW R DLRI DN AL AA D V VFI P++ Q ++ SL + + Sbjct: 7 IVWFRRDLRIEDNPALAAAAR--DGSVFPVFIWCPKEEGQFYPGRVSRWWLKQSLAHLDQ 64 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYE-INEVRRDKLLEKRLQH 129 SL G + D ++ L + TK+ +N Y+ ++ VR + EK ++ Sbjct: 65 SLKSLGAKLVLIKT---DSTLNALLECVNAIQATKVVFNHLYDPVSLVRDHNIKEKLVEL 121 Query: 130 RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189 + KS++ +L P + + + + PF + + ++ P I G V Sbjct: 122 GISVKSYNGDLLYEPWELYDEKGHAFTTFDPFWERCLHKQMEPVSLIPPWQLIPAKGKVE 181 Query: 190 PSNIPRF-----FDYPFQAI-DPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS 243 +I + P A+ + G NA L +F +++ Y + R TS Sbjct: 182 RCSIEDLGLENELEKPSNALLGRAWSPGWGNANKALTEFMDKQLLNYSKNRQKVGGDSTS 241 Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKP----KSGAFSWLNELIWREFYRHLMAFYP 299 LSPYL G LS R+ + + + + + K +L + RE+ R+L +P Sbjct: 242 LLSPYLHFGELSVRKVFQMARVKQISWGNEGNSVGKESVTLFLRAIGLREYSRYLCFNFP 301 Query: 300 SVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITAS 359 + + WN D + W+QG TG+P++DA MR+L GWMHNR+R+I +S Sbjct: 302 -FTHERALLGHLSFFPWNADPSNFKTWRQGRTGYPLVDAGMRELWATGWMHNRIRVIVSS 360 Query: 360 FLVKDLLVDWRIG 372 F VK LL+ W+ G Sbjct: 361 FAVKMLLLPWKWG 373 >gi|224051116|ref|XP_002198900.1| PREDICTED: cryptochrome 2 (photolyase-like), partial [Taeniopygia guttata] Length = 540 Score = 125 bits (315), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 88/286 (30%), Positives = 135/286 (47%), Gaps = 23/286 (8%) Query: 197 FDYPFQAIDP-MFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS------QLSPYL 249 +P + P ++ GE AL L K + K + V + P + S LSPYL Sbjct: 165 LGFPTDGLAPAVWQGGETEALARLDKHLERKAW--VANYERPRMNANSLLASPTGLSPYL 222 Query: 250 SIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSV--CMGKPF 307 G LS R + RL E + + + + S +L+WREF+ P G P Sbjct: 223 RFGCLSCRLFYYRLWELYKKVK-RNSTPPLSLYGQLLWREFFYTAATNNPKFDRMEGNPI 281 Query: 308 IPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK-DLL 366 +I W+++ L W +G TGFP IDA M QL GW+H+ R A FL + DL Sbjct: 282 CI---QIPWDRNPEALAKWAEGKTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLW 338 Query: 367 VDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIR 426 + W G F LLD D + N G W W + + +F + P G+R DP G +++ Sbjct: 339 ISWESGVRVFDELLLDADFSVNAGSWMWLSCSAFFQQ-FFHCYCPVGFGRRTDPSGDYVK 397 Query: 427 HWLPELNNVPTQYIHAPHSWLD------KNDLSLNYPLPIVDHKKA 466 +LP+L P++YI+ P + + K + ++YP P+V+H + Sbjct: 398 RYLPKLKGFPSRYIYEPWNAPESVQKAAKCIIGVDYPKPMVNHAET 443 >gi|205372682|ref|ZP_03225493.1| deoxyribodipyrimidine photolyase [Bacillus coahuilensis m4-4] Length = 482 Score = 125 bits (315), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 133/501 (26%), Positives = 214/501 (42%), Gaps = 64/501 (12%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 +++VWL+ D+R+ D++ LY A + + V++ P W+ +S R HFI SL ++ Sbjct: 1 MNIVWLKRDIRLQDHRPLYEASLRGET--LVVYVVEPSIWKDEPLSMRHLHFILESLEEM 58 Query: 69 QKSL-SQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQY------EINEVRRDK 121 Q S S G + +H + I+ L Q +L+ +++Y E N++ +D Sbjct: 59 QNSFNSIGGKLAVFH-----GEMIDALSLLYTQYGPFRLWSHKEYGPKALLERNKIVKD- 112 Query: 122 LLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPA 181 +EK H + + + S + + ++V+ D LP P Sbjct: 113 WMEKNGLH---WTEYQATAISQKSSSIKQFKKEWQVFM-------------DEPVLPKP- 155 Query: 182 IRLTGP-VTPSNIPR---FFDYPFQAIDPMFPI------GEQNALHILRKFCKEKVYYYV 231 IR+ P PS+ + + Q I PI GE A L+ F E+ +Y Sbjct: 156 IRIQAPDKLPSSFIKDLAGYKKKSQGIKGE-PIRFGQQGGELLAWDTLQTFLDERFVHYE 214 Query: 232 EQRDIP---AIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFS------WL 282 + P +I G S+LSPYL+ G +S R + + L K K + S +L Sbjct: 215 TNQMNPLASSISG-SRLSPYLAFGNISSRDVYQTV------LSSKQKGESHSLEQLDLFL 267 Query: 283 NELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQ 342 + ++ R+F + P++ P + + N S QG TG PI+DA +R Sbjct: 268 SRILRRDFLHQRLIENPTLHQ-YSLHPLFDGVRLNLSSKEYNRILQGETGIPIVDAGVRS 326 Query: 343 LNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDS 402 L GW++ R + F+ + + W+ S LD D + QW A T Sbjct: 327 LKLTGWLNESTRKMIVMFMCQTMRQSWQKVAFDLGSLFLDYDPGIHYSEIQWQAGTWGSK 386 Query: 403 VPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVD 462 P R+ NP GK DP G F++ ++ EL VP +YIH P W SL YP PIVD Sbjct: 387 PP--RVVNPIKIGKEQDPNGEFVKRYVQELKTVPVEYIHEP--WKYPGVFSLQYPAPIVD 442 Query: 463 HKKACHHTLNQYYAAKKQSLL 483 K + ++ K L Sbjct: 443 VVKVNKESRRKFKEIKAAQTL 463 >gi|262191004|ref|ZP_06049214.1| deoxyribodipyrimidine photolyase single-strand-specific [Vibrio cholerae CT 5369-93] gi|262033105|gb|EEY51633.1| deoxyribodipyrimidine photolyase single-strand-specific [Vibrio cholerae CT 5369-93] Length = 461 Score = 125 bits (315), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 120/430 (27%), Positives = 185/430 (43%), Gaps = 27/430 (6%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKV-------IAVFIATPEQWRQHGISARQSHFI 61 + L W NDLR+ DN L A D + I F+A Q Q G + ++ F+ Sbjct: 5 IGLYWFTNDLRVNDNPLLEQASQQVDRLICLYCYPSITPFLARYAQQTQWGEAKKR--FL 62 Query: 62 YASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDK 121 +L + SLS G + + L Q +T ++ + +E + Sbjct: 63 NQTLADLDHSLSTLGQKLWVTPLLPY----QALRHLLTQVEITDIYVDAMAGSDERQTIA 118 Query: 122 LLEKRLQHRVICKSFDDSVLLPPGSILNHALQ-MYKVYTPFRKALIQNLVQADLRSLPVP 180 + + I + S+L P L AL+ + +T FRK V+ S P+ Sbjct: 119 RIHQDFSSVHIHQQALHSLLSEPQ--LPFALEALPSTFTQFRKQ-----VETLSLSAPMG 171 Query: 181 AIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNAL-HILRKFCKEKVYYYVEQRD-IPA 238 R+ P+ D + F GEQ L H F Y E R+ + Sbjct: 172 YPRVLPPIEQGWQLPLMDIVTEPNHSAFIGGEQAGLTHCQNYFSSMLPSRYKETRNGLDG 231 Query: 239 IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFY 298 + +++ SP+L++G +SP+ + L+ + + + EL+WRE++ Y Sbjct: 232 MDYSTKFSPWLALGAVSPKTIYAMLQR--YEAVHGANDSTYWIFFELLWREYFYWYARRY 289 Query: 299 PSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITA 358 + I + + LQ WK G T FPI++A MRQLN G+M NR R + A Sbjct: 290 GAKLFRFSGIGEKKPLTSFYAQRFLQ-WKHGVTPFPIVNACMRQLNQTGYMSNRGRQLVA 348 Query: 359 SFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRF 418 S LV +L +DWR G YF +QL+D D+ SN G WQ+ A G D R FN Q + Sbjct: 349 SCLVHELGLDWRYGAAYFETQLVDYDVGSNWGNWQYLAGVGADPRGS-RQFNLEKQAHTY 407 Query: 419 DPQGTFIRHW 428 DP+G F+ W Sbjct: 408 DPKGEFVAKW 417 >gi|71005224|ref|XP_757278.1| hypothetical protein UM01131.1 [Ustilago maydis 521] gi|46096457|gb|EAK81690.1| hypothetical protein UM01131.1 [Ustilago maydis 521] Length = 881 Score = 125 bits (315), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 84/235 (35%), Positives = 115/235 (48%), Gaps = 24/235 (10%) Query: 242 TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLN-ELIWREFY-------RH 293 ++++SP+L+ G +SPRQ W L + + W+ EL+WR+++ H Sbjct: 379 STKMSPFLAYGSVSPRQIWEALDDHERKFGEDQNT---YWVRFELLWRDYFFFVAEKFGH 435 Query: 294 LM--------AFYPSVCMGKPFIPWTEKIEWNKDS--HLLQAWKQGYTGFPIIDAAMRQL 343 L+ A P K W K + KD H + +G TG P IDA + +L Sbjct: 436 LLYDLGGFERATDPRQAAKKMEDGWWRKWDPLKDGPDHEMTRLLEGRTGIPFIDANILEL 495 Query: 344 NTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSV 403 G+M NR R ASFL KDL DWRIG E+F S L+D D SN G WQ+ A GND Sbjct: 496 RESGFMSNRGRQNVASFLSKDLGYDWRIGAEFFQSHLIDYDPTSNYGNWQYVAGVGNDPR 555 Query: 404 PYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPL 458 R FN Q K +D G +++ W+P L N+ Y+H P WL D Y L Sbjct: 556 AS-RQFNTVKQAKDYDSHGDYVKLWIPALRNLHADYVHTP--WLLTADERRRYGL 607 >gi|295135590|ref|YP_003586266.1| cryptochrome-like DNA photolyase family protein [Zunongwangia profunda SM-A87] gi|294983605|gb|ADF54070.1| cryptochrome-like DNA photolyase family protein [Zunongwangia profunda SM-A87] Length = 429 Score = 125 bits (314), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 117/447 (26%), Positives = 202/447 (45%), Gaps = 40/447 (8%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQ--HGI---SARQSHFI 61 MS L+W N+LR+ DNKAL+ AC + +VIAV+ P ++++ +G ++ F+ Sbjct: 1 MSTGLIWFENNLRVKDNKALFEACEKHE-QVIAVYCFDPRKFKKTKYGFPKTGKFRAKFL 59 Query: 62 YASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDK 121 S+ +Q++L+Q I E + ++ +++ ++ E + Sbjct: 60 IESIKNLQENLNQLNISLLIF----LQKPEEIIPEIARNHKIEAIYFQEEWTTEEKQIIA 115 Query: 122 LLEKRLQHRVICKSFDDSVLLPPGSILNHAL-QMYKVYTPFRKALIQNLVQADLR-SLPV 179 L+K+L + +SF L P I ++ KVYT FRK Q + D+R + + Sbjct: 116 ALKKKLP-TIDFQSFYTQFLFHPEDIAYGDFNEIPKVYTEFRKKCEQYV---DVRKEIEI 171 Query: 180 P-----AIRLTGPVTPSNIPRFFDYPFQAIDPM---FPIGEQNALHILRKFC--KEKVYY 229 P + R+ N+ +Q F GE A + + K+ Sbjct: 172 PKQKPESNRIKNTSKTPNLKELGLEDYQQDSRTAFSFKGGEDEAWKRIDYYFWKTTKLSE 231 Query: 230 YVEQRD-IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWR 288 Y + R+ + +S+LS +L+ G +S ++++K+ + I + + ELIWR Sbjct: 232 YKQTRNGLLGKDYSSKLSAWLANGSISAVSIFHQVKK--FEHEITKNQDTYWLIFELIWR 289 Query: 289 EFYRHLMAFYPSVCMGKPFIPWT----EKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLN 344 +F++ Y S+ G + +K++W LQ W G T ++A + ++ Sbjct: 290 DFFK-----YTSLKHGNSIFKLSGILDKKLDWKFSIESLQQWINGETKEDFVNANINEIA 344 Query: 345 TIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVP 404 G+M NR R SF K+L DWR G YF S L+D D+ SN G W + + GND P Sbjct: 345 ATGFMSNRGRQNVNSFWAKELKQDWRAGAAYFESVLVDYDVHSNWGNWMYNSGVGND--P 402 Query: 405 YFRIFNPTIQGKRFDPQGTFIRHWLPE 431 R FN Q +DP ++ WL + Sbjct: 403 RDRKFNIKKQADLYDPDNQYVDTWLKK 429 >gi|90577812|ref|ZP_01233623.1| deoxyribodipyrimidine photolyase, putative [Vibrio angustum S14] gi|90440898|gb|EAS66078.1| deoxyribodipyrimidine photolyase, putative [Vibrio angustum S14] Length = 491 Score = 125 bits (314), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 130/491 (26%), Positives = 211/491 (42%), Gaps = 43/491 (8%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 +++VWL+ DLR+TD++AL A N+D V+ ++I P S R FI+ SL + Sbjct: 4 INVVWLKRDLRLTDHQALSVAA-NNDYPVMLIYIMEPMLLSDPHYSERHWRFIWQSLEDM 62 Query: 69 QKSLS-QKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127 L+ VF +H +++E LD + LF ++ E+ E+ L Sbjct: 63 NHQLACVNSQVFIFH-----GNAVECLDKLMHHCPINALFSHQ-----EIGLGCTFERDL 112 Query: 128 QHRVIC-KSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 + C K G+++ A K T + K +++A + S+ + + G Sbjct: 113 NIKAWCDKQQIQWHEFQQGAVIRGA----KNRTNWDKHW-NRVMRAPVFSVNLDKVNWVG 167 Query: 187 PVTPSNIPRFFDYP---FQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGT- 242 F P + + M G AL L F + Y P T Sbjct: 168 TCPEQLAYMLFSPPESWRERVQGMQTGGSTLALQTLDDFFSRRGKEYYRSISSPTASRTA 227 Query: 243 -SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSV 301 S+LSPYL+ G +S RQ + ++ + + AFS + L W + P + Sbjct: 228 CSRLSPYLAWGNISLRQVYQQVLAHWNVKGFRRSLIAFS--SRLHWHCHFIQKFESEPDI 285 Query: 302 ---CMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITA 358 CM + + + +K+ L AWK+G TG P+IDA MR L G+++ R+R + Sbjct: 286 EFYCMNRTYDRLLAE-SCSKNKMKLNAWKKGNTGIPLIDACMRCLYHTGYINFRMRSMLV 344 Query: 359 SFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRF 418 SFL L +DWR G + LD + + +Q A G + RI+NPT Q + Sbjct: 345 SFLTHHLNIDWRDGVTHLAQLFLDFEPGIHYSQFQMQA--GVTGINTIRIYNPTKQAQEH 402 Query: 419 DPQGTFIRHWLPELNNVPTQYIHAPHSW---------LDKNDLSLNYPLPIVDHKKACHH 469 DP G FI W+PEL N+P + P + LD N Y PI+D +++ + Sbjct: 403 DPDGEFIHKWVPELANIPVPLLFEPWTLTELEVVMYQLDNNSC---YLYPIIDLERSAKN 459 Query: 470 TLNQYYAAKKQ 480 + + K + Sbjct: 460 ARERLWGWKAR 470 >gi|87123904|ref|ZP_01079754.1| Deoxyribodipyrimidine photolyase [Synechococcus sp. RS9917] gi|86168473|gb|EAQ69730.1| Deoxyribodipyrimidine photolyase [Synechococcus sp. RS9917] Length = 504 Score = 125 bits (314), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 132/493 (26%), Positives = 210/493 (42%), Gaps = 57/493 (11%) Query: 3 ATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIY 62 A + LVW + DLR D++ L A V+ ++I P+ W Q SARQ F Sbjct: 2 AVADQPLQLVWFKRDLRSVDHRPLALALER--GPVLPLYIVEPQFWLQPDASARQWAFCR 59 Query: 63 ASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQ----YEINEVR 118 +L +Q+ LS G D++E L+ L+ V L+ + + + R Sbjct: 60 EALEALQERLSALGQPL----VVRVGDAVEVLERARLRLGVAALWSHEETGNAFTYARDR 115 Query: 119 RDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLP 178 R K + H + + P ++ + T +++ + L L P Sbjct: 116 RVKAWAR--SHGIPWRE------CPQFGVIRGLRRREGWATRWQERMATPLTPEPLALPP 167 Query: 179 VPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPI----GEQNALHILRKFCKEKVYYYVEQR 234 +PAI+ P +P D A DP P G A +L+ F + +V Y Sbjct: 168 LPAIQ------PGGLPSASDLGLTA-DPC-PCRQRGGRPQAETVLQDFLQRRVQRYCGSI 219 Query: 235 DIP--AIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYR 292 P A G S+LSPYL+ G LS R+ + + L + G ++ + L W + Sbjct: 220 SSPLTAFDGCSRLSPYLTWGCLSLRE----VVQASASLTCR---GVRNFRSRLHWHCHFI 272 Query: 293 HLMAFYPSVCMGKPFIPWTEKIE-WNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHN 351 + P++ + F P+ I W D+ QAW +G TG P +DA MR L GW++ Sbjct: 273 QKLESEPAI-EHRDFHPFMRDIRVW--DAERYQAWAEGRTGLPFVDACMRALIAHGWINF 329 Query: 352 RLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAAS---TGNDSVPYFRI 408 R+R + S L + WR + +D G W+ +G+ S+ RI Sbjct: 330 RMRAMLMSVATYHLWLPWRDTGLHLARLFVD-----YEPGIHWSQCQMQSGSTSINTIRI 384 Query: 409 FNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACH 468 +NP QG DP+G FIR W PEL + P ++H P W D +P PIVD +A Sbjct: 385 YNPIKQGLDHDPKGVFIRRWCPELAHRPDVWLHEP--WRGGGD----HPAPIVDPDQAAR 438 Query: 469 HTLNQYYAAKKQS 481 ++ +A ++ + Sbjct: 439 EARDRIWAIRRAA 451 >gi|254421675|ref|ZP_05035393.1| deoxyribodipyrimidine photolyase family [Synechococcus sp. PCC 7335] gi|196189164|gb|EDX84128.1| deoxyribodipyrimidine photolyase family [Synechococcus sp. PCC 7335] Length = 550 Score = 125 bits (314), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 126/489 (25%), Positives = 208/489 (42%), Gaps = 57/489 (11%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M+ +VW R DLRI D++ LY A ++ VF+ + + + F+ + L Sbjct: 1 MNRTVVWFRRDLRIADHEPLYRAARR--GLIVPVFVFDRALLKHPETGSGRVRFMLSCLA 58 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYE--INEVRRDKLLE 124 + + L +G D +E L + + ++ YE VR +L + Sbjct: 59 ALDEDLRSRGGRLILRS----GDPVEVLPKLVRETQSDGIYSYIDYERIYGRVRDARLNQ 114 Query: 125 KRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVP-AIR 183 + + + F+ P G + Y +R+ Q++ +P P I Sbjct: 115 ALTREGLKVRWFE-----PLGGTPDLV-----PYPDYRQLWYQSVRSP---QIPTPQKIE 161 Query: 184 LTGPVTPSNIPRFFDYPFQAIDPMFPIGEQ-NALHILRKFCKE-KVYYYVEQRDIPAIQG 241 + ++ +P + + P G A +L F E K Y Q P+ Sbjct: 162 VPPDISSDELPSLEAVGHISDGMLVPQGGTIEARKLLNLFFDERKAQRYYWQLSYPSANA 221 Query: 242 TSQLSPYLSIGVLSPRQC----WNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAF 297 TS LSPYL G +S R+C W+R + + + A L+ L W + + Sbjct: 222 TSGLSPYLKYGAISIRECAQTIWDRQADPRWWTDKRVERSAHQLLSRLRWGSGFTQRFRY 281 Query: 298 YPSVCMGKPFIPW----------TEKIE---WNKDSHLLQAWKQGYTGFPIIDAAMRQL- 343 P + + + P+ E+++ W+ + +AWK G TG+PIIDAA R L Sbjct: 282 LPQLEVRSLYTPFETGPSDSLLPAEELQNGGWDDNFEHYEAWKNGETGYPIIDAAARCLK 341 Query: 344 NTIGWM--HNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGND 401 T GW+ + R+R I ASFL + +DWR G +FM L+DGD ++ +QWA G Sbjct: 342 ETGGWLALNFRVRAIYASFLCNLIGMDWRYGALHFMRYLIDGDCPIDH--YQWAQQAGVT 399 Query: 402 SV---PYFRIFNPTIQG-KRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYP 457 + RI+NP + R DPQG F+ WLPEL ++ + + P YP Sbjct: 400 HCLNKAWIRIYNPQQEAIDRCDPQGRFVYRWLPELRHLKPEQLGTPPK-------VKGYP 452 Query: 458 LPIVDHKKA 466 PI+++ +A Sbjct: 453 QPILNYAQA 461 >gi|90578157|ref|ZP_01233968.1| deoxyribodipyrimidine photolyase [Vibrio angustum S14] gi|90441243|gb|EAS66423.1| deoxyribodipyrimidine photolyase [Vibrio angustum S14] Length = 443 Score = 125 bits (314), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 127/447 (28%), Positives = 206/447 (46%), Gaps = 51/447 (11%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQ----WRQHGISARQSHFIYASLL 66 L W NDLR+ DN L+ A + D+ + F+ +Q ++ + + F+ +L Sbjct: 6 LYWFTNDLRLHDNPILHQAYEHCDSLLCVYFMEPQKQQFNRYQLVSVGEIRHRFLLQALQ 65 Query: 67 QVQKSLS---QKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLL 123 +Q +L+ Q+ +V Q + IE Q + ++ +R E ++ + L Sbjct: 66 ALQSNLATLGQRLLVMQADPMLSMPVLIE-------QYGINLIYRSRHCGWYEQQQWRYL 118 Query: 124 EKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIR 183 ++ H + D L + M K Y+ FRK + QN+ + L VP Sbjct: 119 KQCYPHLRFVE-VDTHTLYSQDQLPFPLSDMPKSYSKFRKQIEQNVTVSS--PLLVPDYL 175 Query: 184 LTGP-VTPSNIPRFFDYPFQAIDPMFPIGEQNA--LHILRKFCKEKVYYYVEQRDIPAIQ 240 P V S+ D + G +NA +H+ + F Y E R+ AI+ Sbjct: 176 PPQPNVFCSDYLDIRHVHISDNDQVEWHGGENAALMHLQQYFSSSLPSNYKETRN--AIE 233 Query: 241 G---TSQLSPYLSIGVLSPRQCWNRL--KEEFVDLLIKPKSGAFSWLN-ELIWREFYRHL 294 G +++ SP+L+ G LS + L E++ K K+ + W+ EL+WREF++ Sbjct: 234 GWDNSTKFSPWLACGALSAKMIMATLLDYEKY-----KEKNSSTYWIFFELLWREFFQ-- 286 Query: 295 MAFYPSVCMGKPFIPWTEKIEWNKDSHLLQA--------WKQGYTGFPIIDAAMRQLNTI 346 + + +G+ + ++ LL + W +G T +PI++A M+QLN Sbjct: 287 ---WHAHAVGRDLY----RFSGVQNKRLLNSFYPTRFKQWCEGSTPYPIVNAFMKQLNKT 339 Query: 347 GWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYF 406 G+M NR R I AS LV +L +DWR G YF QL+D D+A+N G WQ+ A G DS Sbjct: 340 GYMSNRGRQIVASCLVNELSIDWRYGAAYFEQQLIDHDVAANWGNWQYIAGVGTDSREK- 398 Query: 407 RIFNPTIQGKRFDPQGTFIRHWLPELN 433 R F+ Q + FDP FIRHW + N Sbjct: 399 RWFDLEKQTRIFDPNHHFIRHWRGDEN 425 >gi|254501390|ref|ZP_05113541.1| deoxyribodipyrimidine photolyase family [Labrenzia alexandrii DFL-11] gi|222437461|gb|EEE44140.1| deoxyribodipyrimidine photolyase family [Labrenzia alexandrii DFL-11] Length = 519 Score = 125 bits (314), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 126/491 (25%), Positives = 208/491 (42%), Gaps = 47/491 (9%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 +H+VW + DLR+ D++ L A + V+ +++ P+ W Q +SAR F+ L + Sbjct: 5 IHIVWFKKDLRVFDHEPLKRA--SLQGPVLPLYVIEPDLWDQPDMSARHYAFLSECLQDL 62 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEIN-EVRRDKLLEKRL 127 + LS+ G S D + Y R+ L+ + + +RDK + Sbjct: 63 DQELSRLGKPLLLRTGSVTDVLTYISERY----RIAGLWSHEETGNGWTYQRDKAVA--- 115 Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187 C++ +SV P + + ++ + A + A+ + + PA+R Sbjct: 116 ---AWCRA--NSV---PWTECRQTGVIRRLNSRNGWAGQWDRFMAE-QPIDPPALRPLSG 166 Query: 188 VTPSNIPRFFDYPFQAIDPMFP---IGEQNALHILRKF--CKEKVYYYVEQRDIPAIQGT 242 +T +P+ D A DP G AL L F + K Y + A + Sbjct: 167 LTSGPLPKAADLGL-AADPCPDRQIGGRVAALETLESFLFTRGKPYRAAMATPVKAFEAC 225 Query: 243 SQLSPYLSIGVLSPRQ----CWNRLKEEFVDLLIKPKS---GAF-SWLNELIWREFYRHL 294 S++SPYL+ G +S R+ W R + E K +S GA S+ L W + Sbjct: 226 SRMSPYLTFGTISMREVAQATWAR-QAELKRSDFKGRSTWQGAMRSFSGRLHWHCHFMQK 284 Query: 295 MAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLR 354 + P + + D+ LQAW++G TG P +DA MR L GWM+ R+R Sbjct: 285 LEDEPRLEFENLHRAYDGLRPSTPDAERLQAWQRGETGLPFVDACMRALTATGWMNFRMR 344 Query: 355 MITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWA---ASTGNDSVPYFRIFNP 411 + + L +DWR + D G W+ +G + RI+NP Sbjct: 345 AMLTAVASYHLWLDWRQPGLHLARLFTD-----YEPGIHWSQIQMQSGTTGINTIRIYNP 399 Query: 412 TIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND---LSLNYPLPIVDHKKACH 468 QGK DP G F++ W+PEL ++ I+ P W +N L YP P+VD+ A Sbjct: 400 VKQGKDQDPDGIFVKRWVPELKDIDPALINEP--WKAENAGKVLGKTYPFPVVDYLSAAK 457 Query: 469 HTLNQYYAAKK 479 ++ +A +K Sbjct: 458 EARDKVWAVRK 468 >gi|153828573|ref|ZP_01981240.1| RNA-binding cryptochrome Cry1 [Vibrio cholerae 623-39] gi|148875968|gb|EDL74103.1| RNA-binding cryptochrome Cry1 [Vibrio cholerae 623-39] Length = 461 Score = 125 bits (314), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 120/430 (27%), Positives = 185/430 (43%), Gaps = 27/430 (6%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKV-------IAVFIATPEQWRQHGISARQSHFI 61 + L W NDLR+ DN L A D + I F+A Q Q G + ++ F+ Sbjct: 5 IGLYWFTNDLRVNDNPLLEQAAQQVDRLICLYCYPSITPFLARYAQQTQWGEAKKR--FL 62 Query: 62 YASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDK 121 +L + SLS G + + L Q +T ++ + +E + Sbjct: 63 NQTLADLDHSLSTLGQKLWVTPLLPY----QALRHLLTQVEITDIYVDAVAGSDERQAIA 118 Query: 122 LLEKRLQHRVICKSFDDSVLLPPGSILNHALQ-MYKVYTPFRKALIQNLVQADLRSLPVP 180 + + I + S+L P L AL+ + +T FRK V+ S P+ Sbjct: 119 RIHQDFSSVHIHQQALHSLLSEPQ--LPFALEALPSTFTQFRKQ-----VETLSLSAPMG 171 Query: 181 AIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNAL-HILRKFCKEKVYYYVEQRD-IPA 238 R+ P+ D + F GEQ L H F Y E R+ + Sbjct: 172 YPRVLPPIEQGWQLPLMDIVAEPNHSAFVGGEQAGLTHCQNYFSSMLPSRYKETRNGLDG 231 Query: 239 IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFY 298 + +++ SP+L++G +SP+ + L+ + + + EL+WRE++ Y Sbjct: 232 MDYSTKFSPWLALGAVSPKTIYAMLQR--YEAVHGANDSTYWIFFELLWREYFYWYARRY 289 Query: 299 PSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITA 358 + I + + LQ WK G T FPI++A MRQLN G+M NR R + A Sbjct: 290 GAKLFRFSGIGEKKPLTSFYAQRFLQ-WKHGETPFPIVNACMRQLNQTGYMSNRGRQLVA 348 Query: 359 SFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRF 418 S LV +L +DWR G YF +QL+D D+ SN G WQ+ A G D R FN Q + Sbjct: 349 SCLVHELGLDWRYGAAYFETQLVDYDVGSNWGNWQYLAGVGADPRGS-RQFNLEKQAHTY 407 Query: 419 DPQGTFIRHW 428 DP+G F+ W Sbjct: 408 DPKGEFVAKW 417 >gi|156353900|ref|XP_001623146.1| predicted protein [Nematostella vectensis] gi|156209813|gb|EDO31046.1| predicted protein [Nematostella vectensis] Length = 541 Score = 125 bits (314), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 89/251 (35%), Positives = 120/251 (47%), Gaps = 22/251 (8%) Query: 243 SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGA--FSWLNELIWREFYRHLMAFYPS 300 S +SPYL G LSPR + RL +DL K K G S +L+WREF+ + P+ Sbjct: 267 SGVSPYLRFGCLSPRLFYYRL----MDLYRKVKGGPPPTSLYGQLLWREFFFVVSTNNPN 322 Query: 301 VCMGKPFIPWTEKIEWNKDSHL---LQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMIT 357 + P I+W D + LQ W TGFP IDA M QL GW+H R+ Sbjct: 323 FDKMESN-PICLYIKWRTDKQVASDLQKWTDAQTGFPWIDAIMSQLKQEGWIHYLARVAI 381 Query: 358 ASFLVKDLL-VDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGK 416 ASFL + L + W G + F LLD D +SN G W W + + S +F P K Sbjct: 382 ASFLTRGCLWISWEAGMKVFAEHLLDADWSSNAGNWMWWSYSAF-SQQFFNPPCPVEFSK 440 Query: 417 RFDPQGTFIRHWLPELNNVPTQYIHAPHSW--------LDKNDLSLNYPLPIVDHKKACH 468 D G +IR +LP L P +YIH P W + K + +YP P+VDH+KA Sbjct: 441 SLDASGDYIRKYLPVLKGFPARYIHEP--WKAPLNVQKMAKCIIGKSYPSPMVDHEKAVS 498 Query: 469 HTLNQYYAAKK 479 + + + K Sbjct: 499 KNMEEMTSVYK 509 >gi|254285235|ref|ZP_04960200.1| RNA-binding cryptochrome Cry1 [Vibrio cholerae AM-19226] gi|150424507|gb|EDN16443.1| RNA-binding cryptochrome Cry1 [Vibrio cholerae AM-19226] Length = 461 Score = 125 bits (314), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 120/430 (27%), Positives = 185/430 (43%), Gaps = 27/430 (6%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKV-------IAVFIATPEQWRQHGISARQSHFI 61 + L W NDLR+ DN L A D + I F+A Q Q G + ++ F+ Sbjct: 5 IGLYWFTNDLRVNDNPLLEQASQQVDRLICLYCYPSITPFLARYAQQTQWGEAKKR--FL 62 Query: 62 YASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDK 121 +L + SLS G + + L Q +T ++ + +E + Sbjct: 63 NQTLADLDHSLSTLGQKLWVTPLLPY----QALRHLLTQVEITDIYVDAVAGSDERQAIA 118 Query: 122 LLEKRLQHRVICKSFDDSVLLPPGSILNHALQ-MYKVYTPFRKALIQNLVQADLRSLPVP 180 + + I + S+L P L AL+ + +T FRK V+ S P+ Sbjct: 119 RIHQDFSSVHIHQQALHSLLSEPQ--LPFALEALPSTFTQFRKQ-----VETLSLSAPMG 171 Query: 181 AIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNAL-HILRKFCKEKVYYYVEQRD-IPA 238 R+ P+ D + F GEQ L H F Y E R+ + Sbjct: 172 YPRVLPPIEQGWQLPLMDIVTEPNHSAFVGGEQAGLTHCQHYFSSMLPSRYKETRNGLDG 231 Query: 239 IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFY 298 + +++ SP+L++G +SP+ + L+ + + + EL+WRE++ Y Sbjct: 232 MDYSTKFSPWLALGAVSPKTIYAMLQR--YEAVHGANDSTYWIFFELLWREYFYWYARRY 289 Query: 299 PSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITA 358 + I + + LQ WK G T FPI++A MRQLN G+M NR R + A Sbjct: 290 GAKLFRFSGIGEKKPLTSFYAQRFLQ-WKHGVTPFPIVNACMRQLNQTGYMSNRGRQLVA 348 Query: 359 SFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRF 418 S LV +L +DWR G YF +QL+D D+ SN G WQ+ A G D R FN Q + Sbjct: 349 SCLVHELGLDWRYGAAYFETQLVDYDVGSNWGNWQYLAGVGADPRGS-RQFNLEKQAHTY 407 Query: 419 DPQGTFIRHW 428 DP+G F+ W Sbjct: 408 DPKGEFVAKW 417 >gi|170047814|ref|XP_001851403.1| DNA photolyase [Culex quinquefasciatus] gi|205694137|sp|B0WRR9|CRY1_CULQU RecName: Full=Cryptochrome-1 gi|167870095|gb|EDS33478.1| DNA photolyase [Culex quinquefasciatus] Length = 499 Score = 125 bits (313), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 90/299 (30%), Positives = 141/299 (47%), Gaps = 37/299 (12%) Query: 211 GEQNALHILRKFCKEKVYYYVEQRDIPA------IQGTSQLSPYLSIGVLSPRQCWNRLK 264 GE AL +L + K++ + E +P + S +S L G LS R + + Sbjct: 179 GEAKALELLGRRLKQEEEAFREGYYLPTQARPDFLAPPSSMSAALRFGCLSVRMFYWCVH 238 Query: 265 EEFVDLLIKPK---SGAFSWLNELIWREFYRHLMAFYP--------SVCMGKPFIPWTEK 313 + F + + G +LIWRE++ + P +C+ IPW E Sbjct: 239 DLFARVQANNQLKHPGGHHITGQLIWREYFYTMSVHNPHYAVMELNPICLN---IPWYEA 295 Query: 314 IEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK-DLLVDWRIG 372 KD L WK+G TGFP+IDAAMRQL GW+H+ LR ITA+FL + L + W G Sbjct: 296 ----KDDSL-DRWKEGRTGFPLIDAAMRQLMAEGWLHHILRNITATFLTRGGLWISWEAG 350 Query: 373 EEYFMSQLLDGDLASNNGGWQWAASTGNDS-VPYFRIFNPTIQGKRFDPQGTFIRHWLPE 431 ++F+ LLD D + G W W +S+ + + +P +R DP+G +++ +LPE Sbjct: 351 VQHFLKYLLDADWSVCAGNWMWVSSSAFEKLLDSSSCTSPVALARRLDPKGEYVKRYLPE 410 Query: 432 LNNVPTQYIHAPHSWLDKNDL--------SLNYPLPIVDHKKACHHTLNQYYAAKKQSL 482 L P Y+H P W +L +YP P+V+ + N+ A +++ L Sbjct: 411 LEKFPALYVHEP--WKAPPELQEQYGCVIGKDYPAPMVNLAEVNKCNANKMNAIRQKLL 467 >gi|66910245|gb|AAH96780.1| Cry2b protein [Danio rerio] gi|197247271|gb|AAI64795.1| Cry2b protein [Danio rerio] Length = 639 Score = 124 bits (312), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 132/498 (26%), Positives = 215/498 (43%), Gaps = 57/498 (11%) Query: 7 MSVHLV-WLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASL 65 MSV+ V W R LR+ DN AL A + +D + V+ P + + F+ SL Sbjct: 1 MSVNSVHWFRKGLRLHDNPALLEALNGADT-LRCVYFLDPWFAGASNLGVNRWRFLLQSL 59 Query: 66 LQVQKSLSQKG---IVFQYHQCSNFDDSI-EWLDSYCLQQRVTKLFYNRQYEINEVRRDK 121 + SL + V + F EW +V++L + E RD Sbjct: 60 EDLDASLRKLNSCLFVIRGQPADIFPRLFKEW--------KVSRLTFEFDSEPFGKERDA 111 Query: 122 LLEKRLQHRVICKSFDDSVLLPPGSI--LNHALQMYKVYTPFRKALIQNLVQADLRSLPV 179 ++K + C++ + ++ ++ L+ +++ +P Q LV + P Sbjct: 112 AIKK-----LACEAGVEVIVKISHTLYDLDRIIELNGGQSPLTYKRFQTLVSSMEPPDPP 166 Query: 180 PAIRLTG----PVTP--------SNIPRFFDYPF--QAIDP-MFPIGEQNALHIL-RKFC 223 + G VTP +P + F + + P ++P GE AL + R Sbjct: 167 LSSPDRGMMGKCVTPISENHRDKYGVPLLEELGFDTEGLAPAVWPGGESEALKRMERHLG 226 Query: 224 KEKVYYYVEQRDIPAIQGTS------QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSG 277 + + E + P + + LSPYL G LS R + +L + + + K + Sbjct: 227 PDSTVAWQENFERPKMNASPLMASPLGLSPYLRFGCLSCRLFYCKLTQLYKKV-KKNMNP 285 Query: 278 AFSWLNELIWREFYRHLMAFYPSV--CMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPI 335 + S ++++WREF+ P G P +I W++++ L W + TGFP Sbjct: 286 SISLYDKILWREFFYTAATNNPRFDRMEGNPICI---RIPWDRNAEALAKWAEAKTGFPW 342 Query: 336 IDAAMRQLNTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQW 394 IDA M QL GW+H+ R A FL + DL + W G + F LLD D + N G W Sbjct: 343 IDAIMMQLRQEGWIHHLARHAVACFLTRGDLWISWEEGMKVFEELLLDADWSVNAGSW-L 401 Query: 395 AASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIH----APHS--WLD 448 S + +F + P G+R DP G FIR +LP L + P +YI+ APH Sbjct: 402 CHSCSSFFQQFFHCYCPVGFGRRIDPNGDFIRRYLPVLRDFPAKYIYDPWNAPHDVQLAA 461 Query: 449 KNDLSLNYPLPIVDHKKA 466 K + ++YP P+V+H +A Sbjct: 462 KCVIGVDYPKPMVNHAEA 479 >gi|330752633|emb|CBL87577.1| deoxyribodipyrimidine photolyase [uncultured Flavobacteria bacterium] Length = 485 Score = 124 bits (312), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 85/290 (29%), Positives = 140/290 (48%), Gaps = 27/290 (9%) Query: 209 PIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ--GTSQLSPYLSIGVLSPRQCWNRLKEE 266 P GE A L+ FC +++ Y P S+LSPY+S G L+ + ++ L Sbjct: 193 PAGESMAWKYLKSFCNKRISGYAYNISKPEKSRISCSRLSPYISWGNLNIKLVYHHL--- 249 Query: 267 FVDLLIKPKSGAFSWLNELIWR-EFYRHLMAFYPSVC------MGKPFIPWTEKIEWNKD 319 + +K K+ +N +I R ++ H + + C + K F K + Sbjct: 250 ---IKLKKKNKNLRSINAVISRLHWHCHFIQKFEVDCTYETDFINKGFNSLKRKT----N 302 Query: 320 SHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQ 379 ++AW++G TG+P++DA+MR + GW++ R+R + SF V +L DWR G + Q Sbjct: 303 IKYIKAWEEGKTGYPLVDASMRAVKNTGWINFRMRAMLVSFFVHNLDQDWRDGVYFLAKQ 362 Query: 380 LLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQY 439 LD + + +Q A G + RI+NP K DP G FI+ W+PEL N+P ++ Sbjct: 363 FLDYEPGIHYTQFQMQA--GTTGINTIRIYNPVKNSKDHDPDGVFIKKWIPELKNIPKEF 420 Query: 440 IHAP------HSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQSLL 483 IH P S + K + +YP PIV+ K+ H + + K ++ Sbjct: 421 IHEPCLISEMESEIYKFKIGKDYPSPIVNLKETSKHAKEKIWGHLKNKMV 470 Score = 37.4 bits (85), Expect = 5.8, Method: Compositional matrix adjust. Identities = 20/67 (29%), Positives = 38/67 (56%), Gaps = 1/67 (1%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 +++++VW++ DLR D+++ +AA + + + V+I + S R FIY SL+ Sbjct: 4 LAINIVWIKRDLRTLDHESFHAA-ESKNIPYLPVYIFDNDLIDYPDTSDRHLGFIYNSLI 62 Query: 67 QVQKSLS 73 + K LS Sbjct: 63 DINKKLS 69 >gi|239994035|ref|ZP_04714559.1| deoxyribodipyrimidine photolyase [Alteromonas macleodii ATCC 27126] Length = 435 Score = 124 bits (312), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 125/454 (27%), Positives = 195/454 (42%), Gaps = 53/454 (11%) Query: 2 KATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIA-----TPEQWRQHGISAR 56 K T L W R+DLR+ DN A+ A C + +V ++I TP + + Sbjct: 9 KRTNNNQRGLYWFRHDLRLHDNAAISALC-EAVQQVTFLYILDDKAFTPTTYGFAPMGKH 67 Query: 57 QSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINE 116 + F+ +L+ +++ L++ G ++ + CL Q L + QY Sbjct: 68 RHTFLLQTLVDLKRQLAKLGHDLLI---------VKGDPAECLVQ----LMKSGQYSHLG 114 Query: 117 VRRDKLLEKRLQHRVICKSFDD-SVLLPPGSILNHAL-------QMYKVYTPFRKALIQN 168 V ++R Q + + FD +V+ P L A +M V++PFR+ Sbjct: 115 VSEHCGFDERAQLNAVKRFFDSVTVIETPTFGLFDAQTLPFNIEEMPDVFSPFRRK---- 170 Query: 169 LVQADLRSLPV--PAIRLTGPVTPSNIPRFFDYPFQAIDPMFPI--------GEQNALHI 218 V+ + L V P L P TP F AID P GE AL Sbjct: 171 -VEKHCKPLSVHPPMDSLPSPFTPQLDESFL----FAIDTDLPSPSQSSFVGGETAALTH 225 Query: 219 LRKFC---KEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPK 275 L + K Y + + Q +++LS +L+ G LS R+ ++++ + ++ Sbjct: 226 LNTYLFDWKAAATYKDTRNALDTWQDSTKLSAWLANGSLSAREVIRQVQQ--FEATVEKN 283 Query: 276 SGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPI 335 + EL+WREF+ L Y + I +K W +G TG+PI Sbjct: 284 DSTYWIYFELLWREFFHWLQCKYGANWFRFGGIQ-GKKPSTQHCPETFALWCEGKTGYPI 342 Query: 336 IDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWA 395 +DA MRQL G+M NR R + AS V +L DWR G +F QL+D D+ SN G W + Sbjct: 343 VDACMRQLAETGYMSNRGRQLVASCFVHELRQDWRYGAAWFEHQLIDYDVGSNWGNWLYL 402 Query: 396 ASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWL 429 A G+D + R FN Q + +D G F + WL Sbjct: 403 AGVGSDPRGH-RQFNLQKQTEIYDSDGQFCKKWL 435 >gi|221134514|ref|ZP_03560819.1| deoxyribodipyrimidine photolyase [Glaciecola sp. HTCC2999] Length = 501 Score = 124 bits (312), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 117/499 (23%), Positives = 223/499 (44%), Gaps = 47/499 (9%) Query: 8 SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67 ++ +VW + DLR+ D+ L HN ++ ++I P+ S R F+ SL+ Sbjct: 4 ALDIVWFKRDLRLRDHAPLCRVMHNP-RPILLLYIFEPDLIHDPHYSERHWRFVVQSLVD 62 Query: 68 VQKSLSQ---KGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQY--EINEVRRDKL 122 +Q LS+ + +V Q + FD + D + ++ + + E+ VR + Sbjct: 63 LQAQLSEFQTQVLVLQGAVQTVFDTLLSQCD-------IGNVYSHEEIGIELTYVRDRAM 115 Query: 123 LEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQ-ADLRSLPVPA 181 + QH + P S++ L + ++ + +++ DL ++P + Sbjct: 116 QQYFHQHHIKWTE-------TPYSVVRRGLNHRQDWSKYWHEMMEKPCDDPDLAAIPFVS 168 Query: 182 IRLTGPVTPSNIP-RFFDYP---FQAIDPMFPIG-EQNALHILRKFCKEKVYYYVEQRDI 236 + +T + + + P + P F IG E+ A H F ++ Y Sbjct: 169 QTMVEQLTHQALAIQDIELPTPQWSESHPNFQIGGEKRAWHTYYSFLDQRGKSYARHISS 228 Query: 237 PAI--QGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHL 294 P + + ++LSPY++ G ++ +Q + +L K + ++ L W + H Sbjct: 229 PELSRKSCTRLSPYIAWGNITIKQTYQKLDTLNEADYQGWKRALSAMVSRLHW---HCHF 285 Query: 295 MAFYPSVC------MGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGW 348 + + S C + + + +I+ + S L+AWK G TG PI+DA MR + G+ Sbjct: 286 IQKFESECAMEMRPVNHAYQAYPYEIDQDVISRRLKAWKTGTTGIPIVDANMRAVIATGY 345 Query: 349 MHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAAS-TGNDSVPYFR 407 ++ R+R + S L +DWR+G ++ +Q LD + + +Q A TG +++ R Sbjct: 346 INFRMRAMLVSVLSHHFNLDWRLGVKHLAAQFLDFEPGIHYPQFQMQAGVTGTNTI---R 402 Query: 408 IFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAP------HSWLDKNDLSLNYPLPIV 461 ++NP Q + DPQG FI+ W+PEL P +H P L D + YP P+V Sbjct: 403 LYNPIKQSQEKDPQGRFIKQWVPELREYPDDMVHTPWAISPMERQLFGIDEAGEYPTPVV 462 Query: 462 DHKKACHHTLNQYYAAKKQ 480 D + A ++ ++ +K+ Sbjct: 463 DIEDAAKMARDRLWSFQKR 481 >gi|33866289|ref|NP_897848.1| putative deoxyribodipyrimidine photolyase [Synechococcus sp. WH 8102] gi|33639264|emb|CAE08272.1| putative deoxyribodipyrimidine photolyase [Synechococcus sp. WH 8102] Length = 491 Score = 124 bits (312), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 126/480 (26%), Positives = 196/480 (40%), Gaps = 79/480 (16%) Query: 8 SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67 S+ +VW + DLR+ D++ L A + V+ +++ PE W+Q S RQ F SLL+ Sbjct: 3 SLQIVWFKRDLRVDDHRPLLEAA--ARGPVLPLYVVEPELWQQPDASERQWLFCRESLLE 60 Query: 68 VQKSLSQ--------KGIVFQYHQCSNFDDSIEWLDS---------YCLQQRVTKLFYNR 110 ++++L++ G V Q + + ++ L S Y +RV Sbjct: 61 LRQALAELGQPLVVRSGDVVQVLERARRQFGVDGLWSHEETGNGWTYQRDKRVGAWARAH 120 Query: 111 QYEINEVRRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLV 170 + E+R+ + + K +++ QM + TP Sbjct: 121 GIQWGEIRQFGVTRRMRSRNGWAKRWEE--------------QMAEPITPAPAG------ 160 Query: 171 QADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDP-----MFPIGEQNALHILRKFCKE 225 VPA+ + P IP + P + P G L LR F + Sbjct: 161 --------VPALE---EIDPGVIP---ERPCPELLPDDCSQRQTGGRSIGLGELRDFLQH 206 Query: 226 KVYYYVEQRDIP--AIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLN 283 + Y P A G S+LS YL+ G LS R+ + G S+ + Sbjct: 207 RAPCYQRAMSSPKSAFTGCSRLSAYLAWGCLSMREVLQTSRHH-------SGRGVSSFES 259 Query: 284 ELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQL 343 L W + + P + F P+ I ++ L AW +G TG P +DA MR L Sbjct: 260 RLHWHCHFIQKLEDQPEIEFSD-FHPYMRGIR-ETNAERLAAWTEGRTGVPFVDACMRAL 317 Query: 344 NTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGW-QWAASTGNDS 402 GW++ R+R + SF +L + WR + Q +D + + W Q +G+ S Sbjct: 318 KAHGWINFRMRAMLMSFASYNLWLPWRDSGLHLARQFVDYEPGIH---WSQCQMQSGSTS 374 Query: 403 VPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVD 462 + RI+NP QG DPQG FIR W PEL +V T +IH P W+ L PIVD Sbjct: 375 INTIRIYNPIKQGMDHDPQGVFIRQWCPELKDVSTIHIHEP--WM----LGGGRSAPIVD 428 >gi|89076746|ref|ZP_01163027.1| deoxyribodipyrimidine photolyase, putative [Photobacterium sp. SKA34] gi|89047602|gb|EAR53213.1| deoxyribodipyrimidine photolyase, putative [Photobacterium sp. SKA34] Length = 486 Score = 124 bits (312), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 131/485 (27%), Positives = 197/485 (40%), Gaps = 63/485 (12%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 +VWL+ DLR+TD++AL A NS V+ ++I P S R FI+ SL + Sbjct: 1 MVWLKRDLRLTDHQALSVAA-NSAFPVLLIYIMEPMLLSDPHYSERHWRFIWQSLEDMNH 59 Query: 71 SLS-QKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH 129 L+ VF +H +++E CL Q + N + E+ E+ L Sbjct: 60 QLACVNSQVFIFH-----GNAVE-----CLDQLMHHCPINALFSHQEIGLGCTFERDLNI 109 Query: 130 RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189 + C I H Q V + + + PV ++ L Sbjct: 110 KAWCDK---------QQIQWHEFQQGAVIRGAKNRTNWDKQWNRVMREPVFSVNL----- 155 Query: 190 PSNIPRFFDYPFQAIDPMFP--------------IGEQNALHILRKFCKEKVYYYVEQRD 235 + YP Q D +F G AL L F + Y Sbjct: 156 -DKVNWVSTYPEQLADMLFSPPESWREREQGMQTGGSTLALQTLDDFFSRRGKEYYRSIS 214 Query: 236 IPAIQGT--SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRH 293 P T S+LSPYL+ G +S RQ + ++ + D + A S + L W + Sbjct: 215 SPTASRTACSRLSPYLAWGNISLRQVYQQVLAHWNDKGFRRSLIALS--SRLHWHCHFIQ 272 Query: 294 LMAFYPSV---CMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMH 350 P++ CM + + + +KD L+AWK+G TG P+IDA MR L G+++ Sbjct: 273 KFESEPAIEYFCMNRTYDRLLAE-SCSKDDLKLKAWKEGNTGIPLIDACMRCLYHTGYIN 331 Query: 351 NRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFN 410 R+R + SFL L +DWR G + LD + + Q A G + RI+N Sbjct: 332 FRMRSMLVSFLTHHLNIDWRDGVTHLAQLFLDFEPGIHYSQLQMQA--GVTGINTIRIYN 389 Query: 411 PTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSW---------LDKNDLSLNYPLPIV 461 PT Q + DP G FI W+PEL N+P + P + LD N Y PI+ Sbjct: 390 PTKQAQEHDPDGEFIHKWVPELGNIPVPLLFEPWNLTELEVVMYQLDNNSC---YLYPII 446 Query: 462 DHKKA 466 D K++ Sbjct: 447 DLKRS 451 >gi|153826234|ref|ZP_01978901.1| RNA-binding cryptochrome Cry1 [Vibrio cholerae MZO-2] gi|149739999|gb|EDM54174.1| RNA-binding cryptochrome Cry1 [Vibrio cholerae MZO-2] Length = 461 Score = 124 bits (311), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 119/430 (27%), Positives = 185/430 (43%), Gaps = 27/430 (6%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKV-------IAVFIATPEQWRQHGISARQSHFI 61 + L W NDLR+ DN L A D + I F+A Q Q G + ++ F+ Sbjct: 5 IGLYWFTNDLRVNDNPLLEQASQQVDRLICLYCYPSITPFLARYAQQTQWGEAKKR--FL 62 Query: 62 YASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDK 121 +L + SLS G + + L Q +T ++ + +E + Sbjct: 63 NQTLADLDHSLSTLGQKLWVTPLLPY----QALRHLLTQVEITDIYVDAMAGSDERQAIA 118 Query: 122 LLEKRLQHRVICKSFDDSVLLPPGSILNHALQ-MYKVYTPFRKALIQNLVQADLRSLPVP 180 + + I + S+L P L AL+ + +T FRK V+ S P+ Sbjct: 119 RIHQDFSSVHIHQQALHSLLSEPQ--LPFALEALPSTFTQFRKQ-----VETLSLSAPMG 171 Query: 181 AIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNAL-HILRKFCKEKVYYYVEQRD-IPA 238 R+ P+ D + F GEQ L H F Y E R+ + Sbjct: 172 YPRVLPPIEQGWQLPLLDIVTEPNHSAFVGGEQAGLTHCQNYFSSMLPSRYKETRNGLDG 231 Query: 239 IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFY 298 + +++ SP+L++G +SP+ + L+ + + + EL+WRE++ Y Sbjct: 232 MDYSTKFSPWLALGAVSPKTIYAMLQR--YEAVHGANDSTYWIFFELLWREYFYWYARRY 289 Query: 299 PSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITA 358 + I + + LQ WK G T FPI++A MRQLN G+M NR R + A Sbjct: 290 GAKLFRFSGIGEKKLLTSFYAQRFLQ-WKHGETPFPIVNACMRQLNQTGYMSNRGRQLVA 348 Query: 359 SFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRF 418 S LV +L +DWR G YF +QL+D D+ SN G WQ+ A G + R FN Q + Sbjct: 349 SCLVHELGLDWRYGAAYFETQLMDYDVGSNWGNWQYLAGVGANPRGS-RQFNLAKQAHTY 407 Query: 419 DPQGTFIRHW 428 DP+G F+ W Sbjct: 408 DPKGEFVAKW 417 >gi|167009787|ref|ZP_02274718.1| deoxyribodipyrimidine photolyase [Francisella tularensis subsp. holarctica FSC200] Length = 144 Score = 124 bits (311), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 63/138 (45%), Positives = 86/138 (62%), Gaps = 7/138 (5%) Query: 340 MRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTG 399 MR+ G+MHNR+RMI ASFL+K+ L+ W+ GE++F L D D ASNN WQW A G Sbjct: 1 MREPWQAGYMHNRVRMIVASFLIKNCLIHWKYGEKWFFDTLFDADFASNNANWQWVAGCG 60 Query: 400 NDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSW----LDKNDLSL- 454 D+ PYFRIFNP +Q ++F+ +IR ++PEL +P + I P L + ++L Sbjct: 61 LDAAPYFRIFNPVLQAEKFEAY-EYIRKYVPELKLLPNKLIAKPWEASELVLQEAGITLG 119 Query: 455 -NYPLPIVDHKKACHHTL 471 NYP PIVD KK+ L Sbjct: 120 QNYPKPIVDLKKSRDRAL 137 >gi|126663928|ref|ZP_01734923.1| Deoxyribodipyrimidine photolyase [Flavobacteria bacterium BAL38] gi|126624192|gb|EAZ94885.1| Deoxyribodipyrimidine photolyase [Flavobacteria bacterium BAL38] Length = 486 Score = 124 bits (311), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 123/490 (25%), Positives = 210/490 (42%), Gaps = 50/490 (10%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 +VW + DLR+ D++AL+ A S K + ++I P + S R FI SL +QK Sbjct: 3 VVWFKRDLRLHDHEALHEALSTS-GKTLLLYIFEPSLMKDIHYSQRHFDFIKQSLEALQK 61 Query: 71 SLSQ---KGIVFQYHQCSNFD---DSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLE 124 L + + ++ Q F I + Y Q+ KL Y R + ++ ++K Sbjct: 62 ELQKYHTQILIIQGEAVPVFQKLTQVISIREIYSHQETGIKLTYERDLAVGKLLKEK--- 118 Query: 125 KRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL 184 +I + I N ++ K +++ + + L P P Sbjct: 119 -----GIIWNEY----------ITNGVIRGIKNRKNWKEDWYDYMDKDCLPFNPTPR-SF 162 Query: 185 TGPVTPSNIPRFFDYPF--QAIDPMFPIGE-QNALHILRKFCKEKVYYYVEQRDIPAI-- 239 + + FD P +P F G AL + F +E+V Y P + Sbjct: 163 VKYIEIEELENAFDVPSIKTVHNPNFQKGGVPTALRYMNSFFEERVQNYSNHISKPELGR 222 Query: 240 QGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFS----WLNELIWREFYRHLM 295 +G S+LSPY++ G +S RQ + + E K + F+ W I + M Sbjct: 223 KGCSRLSPYIAWGNISIRQVYTKAWEMHQQGKFKRQISNFASRLRWQAHFIQKFEMESTM 282 Query: 296 AFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRM 355 F + + K + +++ N+ H +AW G TG P++DA MR LNT G+++ R+R Sbjct: 283 EF---IAVNKGYRNLIQRV--NEKYH--KAWITGKTGVPLVDACMRCLNTTGYLNFRMRA 335 Query: 356 ITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQG 415 + SF L W+ + Q LD + + Q A G + R++NP Sbjct: 336 LVVSFYTHHLFQPWQNCSPHLAQQFLDFEPGIHYPQIQMQA--GVTGINTLRVYNPVKNS 393 Query: 416 KRFDPQGTFIRHWLPELNNVPTQYIHAP------HSWLDKNDLSLNYPLPIVDHKKACHH 469 D GTFI+ W+PEL +P ++IH P L ++ +YPLPIV+ ++A Sbjct: 394 YEHDADGTFIKKWVPELATIPAEFIHEPWKLTPIEQILYNFEIGKDYPLPIVNLEEARKF 453 Query: 470 TLNQYYAAKK 479 + + +++ +K Sbjct: 454 SSDFFWSMRK 463 >gi|330447966|ref|ZP_08311614.1| cryptochrome DASH [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] gi|328492157|dbj|GAA06111.1| cryptochrome DASH [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] Length = 441 Score = 124 bits (311), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 116/439 (26%), Positives = 193/439 (43%), Gaps = 45/439 (10%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIA----TPEQWRQHGISARQSHFIYASLL 66 L WL DLR+ DN+ + ++D + FI T +++ + + F+ SL Sbjct: 6 LYWLTQDLRLHDNEIFHQVRDHADNLLCVYFIEPQWQTFNRYQLKSMGEIRHRFLLQSLQ 65 Query: 67 QVQKSLSQKG---IVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLL 123 + +L++ G +V Q + I+ Q R+ ++ +R E ++ + + Sbjct: 66 TLHSNLTRFGQQLVVVQAEPLLSLPALIQ-------QHRINVIYRSRHCGWYEQQQWQYI 118 Query: 124 EKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQ--NLVQADLRSLPVPA 181 ++ H + D L + H M Y+ FRK + + N+ + + +P Sbjct: 119 KQYFPHLRFVE-VDTHTLYSQQQLPFHLSDMPSGYSKFRKLIERDTNVTKPLPQPEYLPP 177 Query: 182 IRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKF--CKEKVYYYVEQRDIPAI 239 +I R + ++ + GE AL L+++ C Y + + Sbjct: 178 PPKMNSSDYLDIGRVYIADNSNVE--WQGGENAALMHLKQYFSCDAPANYKETRNALAGW 235 Query: 240 QGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFY-------- 291 + +++ SP+L+ G LS + LK+ + + S + EL+WREF+ Sbjct: 236 ELSTKFSPWLACGSLSAKTIMAALKD--YEQNVTANSSTYWIFFELLWREFFQWHAHVVG 293 Query: 292 RHLMAF--YPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWM 349 RHL F + + F P + W G T +P+++A M+QLN G+M Sbjct: 294 RHLYRFSGVQNKRLLTSFYP-----------SRFKQWCSGSTPYPLVNAFMKQLNQTGYM 342 Query: 350 HNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIF 409 NR R I AS LV +L +DWR G YF QL+D D+ASN G WQ+ A G DS R F Sbjct: 343 SNRGRQIVASCLVNELSLDWRYGAAYFEQQLIDHDMASNWGNWQYIAGVGTDSRDK-RWF 401 Query: 410 NPTIQGKRFDPQGTFIRHW 428 + Q + FDP FIRHW Sbjct: 402 DIEKQTRLFDPDHAFIRHW 420 >gi|94501552|ref|ZP_01308070.1| putative deoxyribodipyrimidine photolyase [Oceanobacter sp. RED65] gi|94426370|gb|EAT11360.1| putative deoxyribodipyrimidine photolyase [Oceanobacter sp. RED65] Length = 485 Score = 124 bits (311), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 127/479 (26%), Positives = 217/479 (45%), Gaps = 63/479 (13%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 +++VW + DLR+ D+ AL+ A + + ++I P R F+Y SL + Sbjct: 1 MNVVWFKRDLRLHDHDALFKAI-SLGKPCLLLYILEPSLIEDTHYDDRHWRFVYESLQDL 59 Query: 69 QKSLSQKGIVFQYHQCSNFD-DSIEWLDSYCLQQRVTKLFYNRQYEINEV-RRDKLLEKR 126 K LS G H+ + ++++ L + + + +F +++ I RD+ +E Sbjct: 60 NKQLSPYG-----HRLTVIKGEALDVLQAIHQRHEIHTIFSHQEIGIARTFSRDRKIE-- 112 Query: 127 LQHRVICKSFDDSVL---LPPGSILNHALQMYKVYTPFRKALIQNLVQAD------LRSL 177 CK ++S++ P G+++ + L L D RS+ Sbjct: 113 ----YWCK--NNSIVWQQSPHGAVV--------------RGLQHRLYWQDHWYNYMARSI 152 Query: 178 P-VPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIG-EQNALHILRKFCKEKVYYYVEQRD 235 P + +L + + FD ++ +P F G E +A+ L F ++ +Y Sbjct: 153 PPIELNKLKSEQSCLHDVDAFDDIYKQTNPHFQYGGESSAMVTLEDFLTDRHLHYRGSIS 212 Query: 236 IPAIQG--TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFS----WLNELIWRE 289 P+ S+LSPYL+ G LS R C+ + + F K AFS W I ++ Sbjct: 213 SPSRSRHYCSRLSPYLAWGNLSLRYCYQQTQLAFAQSKGKQHLNAFSSRLHWHCHFI-QK 271 Query: 290 FYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSH-LLQAWKQGYTGFPIIDAAMRQLNTIGW 348 F + +V G P+ + +H L W+QG TG+P++DA +R L T G+ Sbjct: 272 FESESRMEFEAVNRGYLDFPY----DIGDSAHEKLAIWQQGKTGYPLVDACIRCLQTTGY 327 Query: 349 MHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAAS-TGNDSVPYFR 407 ++ R+R + SF L + W+ EY LD D + Q A TG +++ R Sbjct: 328 LNFRMRAMLVSFACHYLNLHWKSVAEYLAKLFLDFDPGIHYSQIQMQAGITGTNTI---R 384 Query: 408 IFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSW----LDKNDLSLNYPLPIVD 462 I+NP Q + DP+G FIR W PEL+++ IH+P W L+K +L+YP P+V+ Sbjct: 385 IYNPVKQSQEQDPEGEFIRLWCPELSSLSNDVIHSP--WLLGPLEKQMFALDYPEPMVN 441 >gi|254506014|ref|ZP_05118159.1| cryptochrome dash [Vibrio parahaemolyticus 16] gi|219551237|gb|EED28217.1| cryptochrome dash [Vibrio parahaemolyticus 16] Length = 412 Score = 124 bits (311), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 110/441 (24%), Positives = 196/441 (44%), Gaps = 59/441 (13%) Query: 8 SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQW-----RQHGISARQSHFIY 62 +V L W NDLR +N L A + D V + ++ +H + + FI+ Sbjct: 4 TVGLYWFINDLRRLNNSLLDRAINEVDELVAVYCLPHVTEYLAAFSGEHNLGTHRERFIH 63 Query: 63 ASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKL 122 S+ + +SL+ G+ + E ++ Q+ V+ L+ + +E + Sbjct: 64 QSVEDLSESLAALGVELNIVEQGTTKAVAEIIE----QRGVSHLYVSEVAGFDETVMINV 119 Query: 123 LEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKAL--IQNLVQADLRSLPVP 180 ++++ + +S D++ L + ++ +T FRK + I L+ +L Sbjct: 120 IKQKFPTLEVIQS-DNTTLFHSDQLPFPLDELPATFTQFRKQVEPIFELLYPSQDAL--- 175 Query: 181 AIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNAL-HILRKFCKEKVYYYVEQRD-IPA 238 RL TP+ + GE+ A+ H+ F + Y E R+ + Sbjct: 176 -YRLGEIATPTGVVG---------------GERAAIQHVTWYFSQPFASSYKETRNHLEG 219 Query: 239 IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGA----FSWLNELIWREFY--- 291 ++ SP+L++G +SP Q L++ + ++GA + + EL+WRE++ Sbjct: 220 ESSSTHFSPWLALGCISPAQIVALLRQ------YEQRNGANQSTYWIIFELLWREYFYWY 273 Query: 292 ----RHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIG 347 + + ++ + + P+ D Q W +G T F I+++ M QLN G Sbjct: 274 GRKHQQRVFYFSGLTSKQALKPF--------DDEAFQRWVKGETDFAIVNSCMNQLNETG 325 Query: 348 WMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFR 407 +M NR R + AS L+ +L +DWR G YF +QL+D D+ SN G WQ+ A G D P R Sbjct: 326 FMSNRGRQLVASCLIHELGLDWRRGAAYFETQLIDYDVTSNWGNWQYLAGVGADPNPS-R 384 Query: 408 IFNPTIQGKRFDPQGTFIRHW 428 FN Q + +DP +F R W Sbjct: 385 RFNLAKQAELYDPDSSFTRRW 405 >gi|260431373|ref|ZP_05785344.1| deoxyribodipyrimidine photo-lyase [Silicibacter lacuscaerulensis ITI-1157] gi|260415201|gb|EEX08460.1| deoxyribodipyrimidine photo-lyase [Silicibacter lacuscaerulensis ITI-1157] Length = 541 Score = 124 bits (310), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 120/501 (23%), Positives = 203/501 (40%), Gaps = 68/501 (13%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 + +VW + DLR++D+ AL A + V+ +++ PE W+Q SARQ +F+ ++ ++ Sbjct: 38 MQVVWFKRDLRVSDHPALAQA--SEVGPVLPLYVVEPELWQQPDASARQWNFVAETIAEL 95 Query: 69 QKSLSQKG--IVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 + L + G ++ + + IE + S L + + + ++ + E D ++ Sbjct: 96 RSDLGELGQPLIVRVGE-------IEAVLSELLNRGLIDVLWSHE----ETGNDWTYQRD 144 Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPV--PAIRL 184 Q C+ + +Q + V+ + +LPV P Sbjct: 145 RQVAAWCRDH---------GVRWREVQNHGVFRGLKCRDGWAERWDRFMALPVSSPVALK 195 Query: 185 TGPVTPSNIPRFFDYPFQAIDPMF--PIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGT 242 P IP D + + G L L F + Y + P ++G Sbjct: 196 HIDTEPGYIPTGRDLGLRDDQCVGRQAGGRAAGLDRLNSFLTRRGERYQREMSSP-LEGA 254 Query: 243 ---SQLSPYLSIGVLSPRQCWNRLKEEFVDL---------LIKPKSGAFSWLNELIW--- 287 S+LSPYL+ G LS R+ W + + L ++ SG W I Sbjct: 255 VACSRLSPYLAWGALSMREVWQATENQRRRLPPHAKDWRKSLRSFSGRLHWHCHFIQKLE 314 Query: 288 ---REFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLN 344 R + +L Y + +P P D+ LL AW G TG+P +DA MR L Sbjct: 315 DEPRIEFENLHRLYDGL---RPRAP---------DAELLGAWSNGETGYPFLDACMRSLQ 362 Query: 345 TIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAA---STGND 401 GW++ R+R + + L +DWR E+ D G W+ +G Sbjct: 363 ATGWLNFRMRAMVMATASYHLWLDWRAPGEHLARMFTD-----YEPGIHWSQVQMQSGTT 417 Query: 402 SVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDL-SLNYPLPI 460 + RI+NP QG DP+G FIR WLPEL + Q++H P + D+ YP + Sbjct: 418 GINTVRIYNPVKQGYDQDPEGLFIRTWLPELAQIADQHVHEPWKAENAKDIVGTLYPERV 477 Query: 461 VDHKKACHHTLNQYYAAKKQS 481 DH A + + ++ + Sbjct: 478 FDHLAAAKAARERVWGVRRSA 498 >gi|150026080|ref|YP_001296906.1| deoxyribodipyrimidine photolyase PhrB2 [Flavobacterium psychrophilum JIP02/86] gi|149772621|emb|CAL44104.1| Deoxyribodipyrimidine photolyase PhrB2 [Flavobacterium psychrophilum JIP02/86] Length = 502 Score = 124 bits (310), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 124/493 (25%), Positives = 212/493 (43%), Gaps = 86/493 (17%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 V++VW + DLR TDN+AL+ A H+S ++ +++ P R F+Y SLL + Sbjct: 6 VNIVWFKRDLRFTDNEALFHA-HHSGLPLLLIYVFEPSVMNYDDSDVRHWRFVYESLLDM 64 Query: 69 QKSLS-QKGIVFQYHQCSN--FDDSIEWLDSYCL---QQRVTKLFYNRQYEINEV-RRDK 121 Q L ++ +H S F + I+ + + Q+ K+ ++R E+ ++ Sbjct: 65 QLKLDLVASKIYFFHNESKIIFSELIKIFNVQTIFSHQEIGNKITFDRDIEMQAFFNKNN 124 Query: 122 LLEKRLQ-HRVI---------CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQ 171 ++ K Q H VI K ++D + P I L++ + F + ++ Sbjct: 125 IIWKEFQLHGVIRKLKSRQNWDKKWEDVMRASPRIIDLKDLKIEILSDSFYQEFKGEILN 184 Query: 172 ADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYV 231 ++ + + FQ GE A L F K++ Y Sbjct: 185 PEITT--------------------HNKNFQQG------GENFAWRYLDSFVKKRYVNYS 218 Query: 232 EQRDIPAI--QGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWRE 289 + P + +G S+LSPYL+ G +S R + + + K K ++++ L W Sbjct: 219 KHISKPLLSRKGCSRLSPYLTYGNISMRAIYQYTNQHYE--TSKNKRAILNFVSRLHW-- 274 Query: 290 FYRHLMAFYPSVC-------------MGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPII 336 + H M + C + KP K+ ++AW++G TG PI+ Sbjct: 275 -HCHFMQKFEDECTMEFENANRAYDVLIKP-----------KNETYIKAWQEGKTGVPIV 322 Query: 337 DAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMS-QLLDGDLASNNGGWQWA 395 DA MR L T G+++ R+R + SF +L DWR E +F++ Q LD + + Q Sbjct: 323 DACMRCLVTTGYINFRMRAMVVSFFTFNLWQDWR--ELHFLARQFLDYEPGIHYP--QIQ 378 Query: 396 ASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND---- 451 +G + RI+NP + DP+G FI+ WLPEL +P +H P D Sbjct: 379 MQSGTTGINTIRIYNPIKNSEEHDPEGIFIKQWLPELAEIPLSLLHEPWKMNDMEQQFYN 438 Query: 452 --LSLNYPLPIVD 462 + +YP PIV+ Sbjct: 439 CKIGEDYPTPIVN 451 >gi|124003106|ref|ZP_01687957.1| deoxyribodipyrimidine photolyase [Microscilla marina ATCC 23134] gi|123991756|gb|EAY31164.1| deoxyribodipyrimidine photolyase [Microscilla marina ATCC 23134] Length = 545 Score = 124 bits (310), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 123/484 (25%), Positives = 211/484 (43%), Gaps = 60/484 (12%) Query: 5 TAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYAS 64 T+M +++VW + DLR+ D+ L AA V+ V++ P + + R F+Y S Sbjct: 35 TSM-INVVWFKRDLRLEDHAPLKAAI-EVGLPVLLVYVFEPSLQQSPDWNIRHWQFVYQS 92 Query: 65 LLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQ-QRVTKLFYNRQYEIN-EVRRDKL 122 + + L + C F + + Y L+ ++ K+F +++ I RD+ Sbjct: 93 IEDLNFELEDYQVKLH---C--FHAEVPDVFEYILKTHQIDKVFSHQETGIRLTYDRDRQ 147 Query: 123 LEKRLQHRVIC-KSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPA 181 +++ + + I + F+ + + Q +++ F K + A L+++P Sbjct: 148 MQQFFEQKDIEWQEFEQNGIQRGRKNRRGWAQDWQI---FMKEPLATPNLAQLKAMPYEV 204 Query: 182 IRLTGPVTPSNIPRFFDYPFQAIDPMF-----PIGEQNALHILRKFCKEKVYYYVEQRDI 236 ++ FDY ++ P+G ++A L+ F K+ + Y Q Sbjct: 205 ---------TDFAFLFDYVTGQKIHLYSKNYQPVGMRSAQKYLKAFGKKCIVQYTTQHKQ 255 Query: 237 PAI--QGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHL 294 PA+ Q S LSPYL+ G LS RQ + ++ +D P F E Y H Sbjct: 256 PALSNQSNSHLSPYLAWGNLSVRQVYQHCQQLMID---SPHRANF---------ETYLHH 303 Query: 295 MAFYPSVCMGK-------PFIPWTE---KIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLN 344 + + C+ K F E ++E N + LL+AWK G TGFP++DA+MR + Sbjct: 304 LRMHCQ-CIQKFEMEDYLEFEAGNEAYLQLEQNHKNDLLEAWKNGQTGFPLVDASMRCIR 362 Query: 345 TIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVP 404 G+++ ++R + SFL L W G Y Q LD + + +Q A G Sbjct: 363 QTGYLNFQMRSLIVSFLTHHLWQSWHTGVHYLGQQFLDYEPGVHFVRFQ--AQAGAVDTH 420 Query: 405 YFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIH------APHSWLDKNDLSLNYPL 458 +I NP K+ DP+ FI+ W+PEL N+P IH K + +YP Sbjct: 421 KVKILNPIKVSKKCDPKAQFIKKWVPELKNIPAGLIHDLSKMTTIEQIFYKCTIGQDYPA 480 Query: 459 PIVD 462 PI++ Sbjct: 481 PIIN 484 >gi|91223149|ref|ZP_01258415.1| deoxyribodipyrimidine photolyase, putative [Vibrio alginolyticus 12G01] gi|91191962|gb|EAS78225.1| deoxyribodipyrimidine photolyase, putative [Vibrio alginolyticus 12G01] Length = 493 Score = 124 bits (310), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 123/451 (27%), Positives = 202/451 (44%), Gaps = 42/451 (9%) Query: 8 SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67 ++++VWL+ DLR+TD++ L A V+ ++I P S R F++ SL Sbjct: 3 TINVVWLKRDLRLTDHQPLTQALSTKHPTVL-LYIVEPLLLNNPHYSERHWRFVWQSLQD 61 Query: 68 VQKSLSQKGIVFQYHQCSN-FDDSIEWLDSYCLQQRVTKLFYNRQYEIN-EVRRDKLLEK 125 + ++L G H+ + FDD++ S Q ++ +F +R+ +N RD+ + Sbjct: 62 MDETLKAYG-----HRITVLFDDALACFQSIQAQYQINAVFSHREIGLNCTFERDRQVAA 116 Query: 126 RLQHRVICKSFDDSVLLPPGSILNHALQMY---KVYTPFRKALIQNL-VQADL-RSLPVP 180 L + I D G+++ A+ K + +A I + +Q DL SL Sbjct: 117 WLYEQNI-----DWFEFEHGAVIRGAINRQGWDKHWDSVMRASISPIELQTDLLHSLDAE 171 Query: 181 AIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ 240 A+ + S + + M G + A L F + Y P Sbjct: 172 ALGCSFSPPSSWLSK--------CKGMQTGGSRLAWKTLEDFFHRRGRDYYRSISSPTAS 223 Query: 241 GT--SQLSPYLSIGVLSPRQCWNRLKEE-----FVDLLIKPKSGAFSWLNELIWREFYRH 293 T ++LSPYL+ G +S R+ + L + F LI S W I + + Sbjct: 224 RTACTRLSPYLAWGNISLREVYQYLLKHWQVAGFRRSLIA-LSSRLHWHCHFIQKFESEY 282 Query: 294 LMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRL 353 M FY C+ + + P ++ D L AWK G+TG P+IDA MR L+ G+++ R+ Sbjct: 283 DMEFY---CVNRAYEPLIKQSS-TFDEEKLAAWKSGHTGVPLIDACMRCLHHTGYINFRM 338 Query: 354 RMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQW-AASTGNDSVPYFRIFNPT 412 R + SFL + +DWR+G + LD + + +Q A TG +++ RI+NP Sbjct: 339 RAMLVSFLTHHMNMDWRVGVTHLAQLFLDFEPGIHYPQFQMQAGVTGTNTI---RIYNPI 395 Query: 413 IQGKRFDPQGTFIRHWLPELNNVPTQYIHAP 443 Q + DP GTFI W+PEL VP + P Sbjct: 396 KQAQEHDPNGTFIYKWVPELQMVPPPLLFEP 426 >gi|223647560|gb|ACN10538.1| Cryptochrome-1 [Salmo salar] Length = 643 Score = 124 bits (310), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 132/508 (25%), Positives = 214/508 (42%), Gaps = 76/508 (14%) Query: 5 TAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYAS 64 T S+H W R LR+ DN AL A +SD V V+ P + + F+ Sbjct: 2 TKNSIH--WFRKGLRLHDNPALLEAVRDSDT-VRCVYFLDPWFAGSSNLGVNRWRFLLQC 58 Query: 65 LLQVQKSL---SQKGIVFQYHQCSNF-----DDSIEWLDSYCLQQRVTKLFYNRQYEINE 116 L + SL + + V + + F D +I L C + K R I + Sbjct: 59 LEDLDSSLRKLNSRLFVIRGQPANIFPRLFKDWNISQLTFECDSEPFGK---ERDAAIKK 115 Query: 117 VRRDKLLE--KRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQA-D 173 + + +E R+ H + +D L+ +++ + P Q LV + Sbjct: 116 LATEAGVEVVSRISHTL----YD----------LDKIIELNGGHPPLTFKHFQTLVDSMP 161 Query: 174 LRSLPVPAI------RLTGPVTPSNIPRF-------FDYPFQAIDP-MFPIGEQNALHIL 219 PV A+ R PV+ ++ ++ + + + P ++P GE AL + Sbjct: 162 PPDAPVEALSRASMGRCVTPVSDNHRDKYGVPLLEELGFDTEGLAPAVWPGGESEALTRI 221 Query: 220 RKFCKEKV-------YYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLI 272 + + + + P + LSPYL G LS R +++L E + + Sbjct: 222 ERQLGPDLSTAWQVNFESTRKTASPLLPSPLGLSPYLRFGCLSCRLFYSKLAELYKKVKT 281 Query: 273 KPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFI-----PWTEKIEWNKDSHLLQAWK 327 S S ++L+WREF FY + F P +I W++++ L W Sbjct: 282 N-GSPPISLYDKLLWREF------FYTAATNNPRFDKMDGNPICIRIPWDRNAEALAKWA 334 Query: 328 QGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLA 386 + TGFP IDA M QL GW+H+ R A FL + DL + W G + F LLD D + Sbjct: 335 EAKTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWISWEEGMKVFEELLLDADWS 394 Query: 387 SNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSW 446 N G W S + +F + P G++ DP+G FIR +LP L ++P +YI+ P W Sbjct: 395 VNAGSW-LCHSCSSFFQQFFHCYCPVGFGRKIDPKGDFIRRYLPVLKDMPDKYIYDP--W 451 Query: 447 --------LDKNDLSLNYPLPIVDHKKA 466 K + ++YP P+V+H +A Sbjct: 452 NAPIEVQRAAKCVVGVDYPKPMVNHAEA 479 >gi|114768849|ref|ZP_01446475.1| deoxyribodipyrimidine photolyase [alpha proteobacterium HTCC2255] gi|114549766|gb|EAU52647.1| deoxyribodipyrimidine photolyase [alpha proteobacterium HTCC2255] Length = 519 Score = 124 bits (310), Expect = 5e-26, Method: Compositional matrix adjust. Identities = 122/494 (24%), Positives = 204/494 (41%), Gaps = 33/494 (6%) Query: 5 TAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYAS 64 T ++++VW + DLR D+ L A + ++ +++ P+ W+ S + HFIY Sbjct: 4 TLDAINIVWFKRDLRTNDHAPLLNASQ-QNTPILPIYVVEPDYWKTESSSRKHWHFIYDC 62 Query: 65 LLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLE 124 L+ + L+ G D I+ + + + K Y+ + N ++ + Sbjct: 63 LVDLNNELNDLGQPLIVQTGDVVDIFIQISEIFDI-----KNIYSHEETGNMWTYER--D 115 Query: 125 KRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL 184 KR+Q V CK P + + L ++ R + + + P + Sbjct: 116 KRVQ--VWCKKNAIGQKEYPSNGVVRKLSSRDDWSKIRNKRMSEKIYPKPDYIN-PIKKN 172 Query: 185 TGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQG--T 242 P+ F P I + G A+ L+ F E+ Y+ P Sbjct: 173 VYSTIPNKDDELFGTPI--IGRVQRGGRIKAICDLKSFLNERSSNYLYHISAPGKSEKYC 230 Query: 243 SQLSPYLSIGVLSPRQCWNRLKE---EFVDLLIKPKSGAFSWLN-ELIWREFYRHLMAFY 298 S+LS +L+ G LS R+ +K+ +F D K S N L WR + + Sbjct: 231 SRLSAHLTWGSLSVREIVQSIKKRRLQFCDDDKKIYGRNLSAFNSRLAWRCHFIQKIESQ 290 Query: 299 PSV---CMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRM 355 P++ CM F KI+ D + AW +G TG+P +DA MR L + GW+ R+R Sbjct: 291 PNIETHCMHSAFES-LRKID--PDDNKFLAWSKGNTGYPFVDACMRNLISEGWITFRMRA 347 Query: 356 ITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQG 415 + SF L +DWR+ Y D + + Q +G + R++NP Q Sbjct: 348 MLVSFASYQLWIDWRLSGNYLAKLFTDFEPGIHFS--QLQMQSGVTGINAMRVYNPIKQS 405 Query: 416 KRFDPQGTFIRHWLPELNNVPTQYIHAP---HSWLDKN---DLSLNYPLPIVDHKKACHH 469 D G FI+ W+PEL ++P ++IH P H+ L N + +YP PIVDH+ Sbjct: 406 IEHDINGHFIKKWVPELIDLPEKFIHEPWKYHNNLVDNCSVQIGRDYPFPIVDHEHEARI 465 Query: 470 TLNQYYAAKKQSLL 483 + +K L Sbjct: 466 AKQKISNVRKNELF 479 >gi|149376017|ref|ZP_01893783.1| deoxyribodipyrimidine photolyase family protein [Marinobacter algicola DG893] gi|149359654|gb|EDM48112.1| deoxyribodipyrimidine photolyase family protein [Marinobacter algicola DG893] Length = 507 Score = 124 bits (310), Expect = 5e-26, Method: Compositional matrix adjust. Identities = 122/490 (24%), Positives = 198/490 (40%), Gaps = 75/490 (15%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 +VW + DLR D++ L AA N VI +++ + W+ S RQ FI LL + + Sbjct: 4 VVWFKRDLRTRDHEPLIAAV-NLGEPVIPIYVVEDDYWQLPDTSERQWAFIRDCLLDLDQ 62 Query: 71 SLSQKGIVFQYHQCSN-FDDSIEWLDS-------YCLQQRVTKLFYNRQYEINEVRRDKL 122 L G C+ D + L + +C Q+ + Y+R + + Sbjct: 63 QLKYAGNRLVV--CNGAVTDVLNQLKANHDVQRVFCHQETGGQWTYDRDRSVIHWCTENN 120 Query: 123 LEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAI 182 LE R + V + + + ADL PV Sbjct: 121 LEYR------------------------EWNQFGVVRRLKNRDVWDKAWADLMRRPVLD- 155 Query: 183 RLTGPVTPSNIPRFFD--YPFQAIDPMFPI----------GEQNALHILRKFCKEKV--Y 228 +P NIP P + I P F G +L F + + Y Sbjct: 156 ------SPENIPSAHSQATPLEGISPTFTTRDSCGDRQAGGSTKGHKLLDSFLERRCIGY 209 Query: 229 YYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLK--EEFVDLLIKPKSGAFSWLNELI 286 Y + A++ S+LSP+++ G +S R+ + + K + L + + S+ + L Sbjct: 210 QYNMSSPLSAVKACSRLSPHIAYGSVSLREIYQQAKITGNHRNTLPRKQKSLTSFRSRLH 269 Query: 287 WREFYRHLMAFYPSVCMGKPFIPWTEKIEWNK----DSHLLQAWKQGYTGFPIIDAAMRQ 342 W + + P + F ++E K DS LQ W++G TG+P++DA MR Sbjct: 270 WHCHFIQKLEDEPEL----EFRAMHRELEHLKSGPNDSERLQRWQEGQTGWPLVDACMRA 325 Query: 343 LNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDS 402 L GW++ R+R + + L + WR + Q D + + Q +G Sbjct: 326 LQHTGWINFRMRAMLMAVASYQLWLHWRDPALHLARQFTDFEPGIHYP--QAQMQSGLTG 383 Query: 403 VPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWL----DKNDLSLN-YP 457 + RI+NP +Q ++ DPQG FIR W+PEL VP + IH P WL + N Y Sbjct: 384 INALRIYNPVLQSQKLDPQGEFIRRWIPELAGVPAEMIHTP--WLLTPAQQQRFGGNTYI 441 Query: 458 LPIVDHKKAC 467 P+ DH++A Sbjct: 442 APVCDHEQAA 451 >gi|126665353|ref|ZP_01736335.1| Deoxyribodipyrimidine photolyase [Marinobacter sp. ELB17] gi|126629981|gb|EBA00597.1| Deoxyribodipyrimidine photolyase [Marinobacter sp. ELB17] Length = 441 Score = 124 bits (310), Expect = 5e-26, Method: Compositional matrix adjust. Identities = 116/438 (26%), Positives = 204/438 (46%), Gaps = 41/438 (9%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHG------ISARQSHFIYAS 64 L W DLR+ DN AL AA + ++ V++ P +W + G + + F++ S Sbjct: 4 LYWFTRDLRLHDNAALLAASKSD--MLLCVYVVEP-RWFKPGPLQCKTMGHHRWRFLWQS 60 Query: 65 LLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLE 124 L+ +++SL G + D + + ++++ +RQ E + + L+ Sbjct: 61 LIGLERSLRALGQRLHI----AWGDPETVIPALAHGHVISRIVRSRQPGTREAVQWQTLQ 116 Query: 125 KRLQHRVICKSFDDSVLLPPGSILNHALQ-MYKVYTPFRKALIQNLVQADLRSLPVPAIR 183 +L I + +++ L S+L LQ + ++ FRK LI+ L +P ++ Sbjct: 117 DKLPK--IAFTQYETLGLFTESLLPMPLQDLPTTFSQFRK-LIEKKGDRGPSRLRIPTLK 173 Query: 184 LTGPVTPSNIPRFFDYPFQAIDP-----MFPIGEQNALHILRKFCK--EKVYYYVEQRD- 235 + P +P AI F GEQ L L+ F + Y E R+ Sbjct: 174 MLPPA--PGLPDDNRGECPAIQEPTQPQAFRGGEQAGLARLQDFLAGTHAIDTYKETRNA 231 Query: 236 IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLM 295 + +S+ SP+L+ G LS R+ + + + +S + W E++WRE++ Sbjct: 232 LDDWNSSSKFSPWLAHGCLSAREVADSISL-YEQQHTSNESTYWLWF-EVLWREYF---- 285 Query: 296 AFYPSVCMGKPFIPWTEKIEWNKDS-----HLLQAWKQGYTGFPIIDAAMRQLNTIGWMH 350 ++ ++ G + ++ + S H +AW +G T +P+++AAM QL G++ Sbjct: 286 -YWYALRHGSELFR-RDGVQGKRQSVTFYGHRFKAWCEGNTSYPLVNAAMNQLRETGYIS 343 Query: 351 NRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFN 410 NR R + AS + +L +DWR G +F QL+D D+ASN G WQ+ A G D R FN Sbjct: 344 NRSRQLVASCFINELELDWRYGAAWFEQQLIDYDVASNYGNWQYLAGVGADPRG-LRRFN 402 Query: 411 PTIQGKRFDPQGTFIRHW 428 Q +++DP GTF+ W Sbjct: 403 LDKQAQQYDPNGTFVERW 420 >gi|85711299|ref|ZP_01042358.1| Deoxyribodipyrimidine photolyase [Idiomarina baltica OS145] gi|85694800|gb|EAQ32739.1| Deoxyribodipyrimidine photolyase [Idiomarina baltica OS145] Length = 441 Score = 123 bits (309), Expect = 5e-26, Method: Compositional matrix adjust. Identities = 119/432 (27%), Positives = 186/432 (43%), Gaps = 27/432 (6%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQ------HGISARQSHFIYAS 64 LVW DLR+ DN L A V I E W + +GIS + +I + Sbjct: 9 LVWFNLDLRLIDNLTLIRAAEQCQQLVCCFVI--DESWFKGNRYGLNGISQPRWRYIQQA 66 Query: 65 LLQVQKSLSQKG---IVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDK 121 + + SL Q G I+ + + I L+ V ++ + + E RR Sbjct: 67 IADLAASLQQHGQQLIIRKGQPTTEISTLISTLE-------VDAVYCSDDPGVYERRRWD 119 Query: 122 LLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPA 181 L KR + + + + LL + ++ Y+ FRK + L + + Sbjct: 120 TLVKRFPY-ITFERVSNHTLLTERELDFPLEELPATYSAFRKRF-EPLAETFPSGQALSQ 177 Query: 182 IRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNA-LHILRKFCKEKVYYYVEQRD-IPAI 239 ++ P+ I PF GE A H+ + F +Y E R+ + Sbjct: 178 LKALPPMPRRTIASEHT-PFVEPSGYLQGGELAAHEHLTQYFKSSAPSHYKETRNALDNF 236 Query: 240 QGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYP 299 +++LS L++G +SPRQ + L+ + + + EL+WRE++ + + Sbjct: 237 ADSTKLSAALALGNISPRQVIDALRN--YEATQGANESTYWIVFELMWREYFHWYLRRFQ 294 Query: 300 SVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITAS 359 I +K + S AW QG T +PI++A M QLN G+M NR R + AS Sbjct: 295 EKVFKFGGIQ-DKKPTTSFYSQRFAAWCQGKTPYPIVNACMHQLNQTGYMSNRGRQLVAS 353 Query: 360 FLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFD 419 L+ +L +DWR G YF QL+D D+ASN G WQ+ A G D R FN Q + +D Sbjct: 354 CLIHELQLDWRYGAAYFEQQLIDYDVASNWGNWQYLAGVGADPRGS-RRFNLDKQTQTYD 412 Query: 420 PQGTFIRHWLPE 431 P G FI+ W E Sbjct: 413 PNGEFIKRWHGE 424 >gi|28900058|ref|NP_799713.1| deoxyribodipyrimidine photolyase [Vibrio parahaemolyticus RIMD 2210633] gi|308094879|ref|ZP_05892988.2| cryptochrome dash [Vibrio parahaemolyticus AN-5034] gi|308095330|ref|ZP_05905084.2| cryptochrome dash [Vibrio parahaemolyticus Peru-466] gi|308125427|ref|ZP_05775230.2| cryptochrome dash [Vibrio parahaemolyticus K5030] gi|81839701|sp|Q87JP5|CRYD_VIBPA RecName: Full=Cryptochrome DASH gi|28808341|dbj|BAC61546.1| deoxyribodipyrimidine photolyase [Vibrio parahaemolyticus RIMD 2210633] gi|308086793|gb|EFO36488.1| cryptochrome dash [Vibrio parahaemolyticus Peru-466] gi|308091994|gb|EFO41689.1| cryptochrome dash [Vibrio parahaemolyticus AN-5034] gi|308115600|gb|EFO53140.1| cryptochrome dash [Vibrio parahaemolyticus K5030] Length = 445 Score = 123 bits (309), Expect = 5e-26, Method: Compositional matrix adjust. Identities = 125/444 (28%), Positives = 190/444 (42%), Gaps = 55/444 (12%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQH-----GISARQSHFIYA 63 + L W DLR+ DN L A D V + + H + + FI A Sbjct: 5 IGLYWFTFDLRLHDNSLLVDASSFLDELVCLYCRPSVTPFLHHFAQEVTLGRARQKFIDA 64 Query: 64 SLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQ-RVTKLFYNRQYEINEVRRDKL 122 SL ++ +L Q G + D Y +Q VT L+ + +E Sbjct: 65 SLCELNDALGQLG-----QRLWTLDLPPYQALKYAIQYLSVTHLYSDAMAGSDEQSILHK 119 Query: 123 LEKRLQHRVICKS-----FDDSVLLPPGSILNHALQMYKVYTPFRKAL----IQNLVQAD 173 L+ H VI + FD+S L P ++ + + + +T FRK + I + + A Sbjct: 120 LQDEYPHLVIVQHSVRSLFDESKL--PFTLPD----LPETFTQFRKCVEGIDIAHPIDAP 173 Query: 174 LRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNAL-HILRKFCKEKVYYYVE 232 R P+P G P+ +FD +F GE + L H R F Y E Sbjct: 174 SRLPPMP----KGAQLPTLSSFYFDE-----SALFSGGEWSGLAHCRRYFFSGLASSYKE 224 Query: 233 QRD-IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREF- 290 R+ + + +++ SP+L++G +SPR LK+ + + EL+WRE+ Sbjct: 225 TRNGLDGMAYSTKFSPWLALGCVSPRMIHAMLKQ--YEQTQGANDSTYWIYFELLWREYF 282 Query: 291 ------YRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLN 344 Y+ + + + P + +H Q WK G T +PI++A M QLN Sbjct: 283 YWYARCYQQRLFRFGGIRNQPPLTSFY--------AHRFQQWKNGTTPYPIVNACMHQLN 334 Query: 345 TIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVP 404 G+M NR R + AS LV +L +DWR G YF +QL+D D+ SN G WQ+ A G D Sbjct: 335 HTGYMSNRGRQLVASCLVHELGLDWRYGAAYFETQLIDYDVGSNWGNWQYLAGVGADPRG 394 Query: 405 YFRIFNPTIQGKRFDPQGTFIRHW 428 R FN Q + +DP FI W Sbjct: 395 S-RQFNLEKQTQMYDPNHEFIERW 417 >gi|307826658|gb|ADN94464.1| cryptochrome [Helicoverpa armigera] Length = 548 Score = 123 bits (309), Expect = 6e-26, Method: Compositional matrix adjust. Identities = 80/244 (32%), Positives = 122/244 (50%), Gaps = 21/244 (8%) Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDL---LIKPKSGAFSWLNELIWREFYRHLMAFYPSV 301 LSP L G LS R + +++ F + + S + +LIWRE++ + P+ Sbjct: 258 LSPALRFGCLSVRSFYWAVQDLFRQVHQGRLTTNSASHFITGQLIWREYFYTMSVNNPNY 317 Query: 302 --CMGKPF---IPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMI 356 G P IPW N + LQ W +G TGFP +DAAMRQL T GW+H+ R Sbjct: 318 GQMAGNPICLDIPWK-----NPEGDELQRWVEGRTGFPFVDAAMRQLRTEGWLHHAARNT 372 Query: 357 TASFLVKDLL-VDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDS-VPYFRIFNPTIQ 414 ASFL + L + W G +F+ LLD D + G W W +S+ ++ + P Sbjct: 373 VASFLTRGTLWLSWEHGLNHFLKYLLDADWSVCAGNWMWVSSSAFEALLDSGECACPVRL 432 Query: 415 GKRFDPQGTFIRHWLPELNNVPTQYIHAP-HSWLDKND-----LSLNYPLPIVDHKKACH 468 G+R DP G ++R ++PEL +P +YI+ P + +D + + +YP P+V+H A Sbjct: 433 GQRLDPSGEYVRRYVPELARMPVEYIYEPWKAPIDVQERATCVIGKDYPAPVVNHLVAAQ 492 Query: 469 HTLN 472 N Sbjct: 493 RNKN 496 >gi|329120351|ref|ZP_08249019.1| deoxyribodipyrimidine photo-lyase [Neisseria bacilliformis ATCC BAA-1200] gi|327462692|gb|EGF09015.1| deoxyribodipyrimidine photo-lyase [Neisseria bacilliformis ATCC BAA-1200] Length = 456 Score = 123 bits (309), Expect = 6e-26, Method: Compositional matrix adjust. Identities = 131/471 (27%), Positives = 200/471 (42%), Gaps = 67/471 (14%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 L+ +LR+ N L+A + A + A H + RQ +F+ +L ++ Sbjct: 33 LLHFTRNLRLAANPLLHAVQYGIPAAAVYFLPA-------HS-NPRQMYFLSQTLAELSD 84 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130 L++ GI + S + + Y + +T + R + R + E+ L Sbjct: 85 GLAEYGIPLHVFEGSPTEHLNALMARYPTARLITAQ-HIRLPDDPSCRVQYVQEEILPLP 143 Query: 131 VICKSFDDSVLLPPGSILNHALQMYKVY--------TPFRKAL--IQNLVQADLRSLPVP 180 V + D S LPP ++ + K TP + A+ +Q + +LR P P Sbjct: 144 VRRTTLDTS--LPPDLVVYRDAWLRKAAKSAEETDSTPDKAAVRRVQQHLPPELRDAPPP 201 Query: 181 AIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ 240 V+ +P+ GE A R F K+ YY RD PA + Sbjct: 202 PS-----VSAQTLPQTG-------------GETAAWTAWRAFTP-KLPYYGLMRDFPAQK 242 Query: 241 GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPS 300 GTSQLS L G+L R+ ++ + A WL+ + + ++ R M F Sbjct: 243 GTSQLSAALRFGLLPVRRLARTVQ-------VMGGESAEKWLHSVFYGDYCRRRMPFAAG 295 Query: 301 ---------VCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHN 351 V + P + + W++G TG P+IDAAMR L+ GWMH Sbjct: 296 LWAWEDGALVEIRPPAAAPAMPALSEEQAAAFDLWRRGRTGVPLIDAAMRLLDGGGWMHP 355 Query: 352 RLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNP 411 RLR + A+F V L + GE F + L D D ++N GWQ AA+ R+ NP Sbjct: 356 RLRSLCAAFAVSALGIPQAAGEACFAAALTDYDYSANRVGWQTAAAA--------RMKNP 407 Query: 412 TIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLN-YPLPIV 461 + + DP G FIR LPE+ ++P IHAPH + +SLN YP PIV Sbjct: 408 FAESQNLDPGGRFIRSHLPEIAHLPDNIIHAPHR--AGSGVSLNGYPAPIV 456 >gi|302915963|ref|XP_003051792.1| predicted protein [Nectria haematococca mpVI 77-13-4] gi|256732731|gb|EEU46079.1| predicted protein [Nectria haematococca mpVI 77-13-4] Length = 639 Score = 123 bits (308), Expect = 7e-26, Method: Compositional matrix adjust. Identities = 101/313 (32%), Positives = 143/313 (45%), Gaps = 42/313 (13%) Query: 182 IRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYY--YVEQRDIPA- 238 ++ GP I + F + GE AL L K +K Y + + + PA Sbjct: 211 TKIAGPNGDFAIETMEELGFPSATTPHRGGETLALEALDKIIADKKYTAKFEKPKTSPAR 270 Query: 239 --IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGA-FSWLNELIWREFYRHLM 295 Q T+ LSP+L G LS R+ + R+ +E VD K S S + +L++R+ Y Sbjct: 271 FEPQSTTLLSPFLHFGALSVREFYWRV-QEVVDAYGKGASTPPESLIGQLLFRDMYFAAQ 329 Query: 296 AFYPSVCMGK------PFIPWTEKIEWNKDSHLLQA---------------WKQGYTGFP 334 A V M FIPW + + + L+ WK G TGFP Sbjct: 330 AALGDVFMQTVKNPHCRFIPWHLPSKRDPKTGLVTGEYHVDSEEADIWFKRWKTGMTGFP 389 Query: 335 IIDAAMRQLNTIGWMHNRLRMITASFLVKD-LLVDWRIGEEYFMSQLLDGDLASNNGGWQ 393 IDA MRQL GW+H+ R A FL + +DW G E F L+D + A N G WQ Sbjct: 390 WIDALMRQLKEEGWIHHLGRHAVACFLTRGGCYIDWERGCEVFEEWLIDHEPACNAGNWQ 449 Query: 394 WAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLS 453 W + T S YFR ++P G+++D QG FIR ++PEL N+ +YI+ P Sbjct: 450 WLSCTAFFSQ-YFRCYSPVSFGQKWDKQGDFIRRYVPELKNMDAKYIYEP---------- 498 Query: 454 LNYPLPIVDHKKA 466 + P+ D KKA Sbjct: 499 --WKAPLPDQKKA 509 >gi|332668099|ref|YP_004450887.1| DNA photolyase FAD-binding protein [Haliscomenobacter hydrossis DSM 1100] gi|332336913|gb|AEE54014.1| DNA photolyase FAD-binding protein [Haliscomenobacter hydrossis DSM 1100] Length = 501 Score = 123 bits (308), Expect = 7e-26, Method: Compositional matrix adjust. Identities = 126/484 (26%), Positives = 208/484 (42%), Gaps = 32/484 (6%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 +++VWL+ DLR+ D+ L AA N + +F P R F++ SL + Sbjct: 6 INIVWLKRDLRLRDHDPLAAAIDNG-LPTLLLFCFEPSLMACPESDVRHWRFVFESLADL 64 Query: 69 QKSLS-QKGIVFQYHQCSNFDDSIEWL-DSYCLQQRVTKLFYNRQYEIN-EVRRDKLLEK 125 Q L ++ ++ HQ +EW+ D Y +QQ ++ + + I RDK ++K Sbjct: 65 QNRLKIREKQLYAVHQ--EVITVLEWITDFYQIQQ----VYSHEEVGIKITFDRDKAVKK 118 Query: 126 RLQHRVIC-KSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSL-PVPAIR 183 + I + F + ++ L++ + T A +L + S+ PV + Sbjct: 119 WCTEQGIAYQEFPQNGIIRGRKHRQGWLKLLEKSTFKASATKVDLEKLQTLSIDPVLLEK 178 Query: 184 LTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGT- 242 T PS I + + FQ GE A + F +E+ Y Q PA T Sbjct: 179 FTTAPLPSVI-QSYQEGFQR------GGETYAWRYFQSFLQERSKNYNRQLSKPAGSRTS 231 Query: 243 -SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSV 301 S+LSPYL+ G +S R+ L + F + L WR + + V Sbjct: 232 CSRLSPYLAFGCISAREVMQHLDAHLSQSADRWNLNNFR--SRLWWRSHFIQKLETDWRV 289 Query: 302 CMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFL 361 + P P +++ D +AW QG TGFP++DA+MR L GW++ R+R + SF Sbjct: 290 EIA-PINPVFVQLDRQMDGPWFEAWAQGKTGFPMVDASMRCLQATGWINFRMRAMLVSFA 348 Query: 362 VKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQ 421 L +DWR + LD + + Q A G R++NP+ Q + DP Sbjct: 349 TFVLWLDWRPVATHLARLFLDFEPGIHYPQIQMQA--GLTGYHTLRMYNPSTQVTKNDPD 406 Query: 422 GTFIRHWLPELNNVPTQYIHAPHSWLDKN------DLSLNYPLPIVDHKKACHHTLNQYY 475 G FI+ W+PEL VP+ + P + +YP+P+VD K ++Y+ Sbjct: 407 GIFIKKWVPELQAVPSTLLAEPWKMTPMEQKFYHCSIGSDYPVPLVDFDKVAAQNKDRYW 466 Query: 476 AAKK 479 ++ Sbjct: 467 QIRQ 470 >gi|325141516|gb|EGC63986.1| putative deoxyribodipyrimidine photolyase [Neisseria meningitidis 961-5945] Length = 433 Score = 123 bits (308), Expect = 7e-26, Method: Compositional matrix adjust. Identities = 126/469 (26%), Positives = 189/469 (40%), Gaps = 91/469 (19%) Query: 1 MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHF 60 + A T + LVW R +LRI DN AL AA VI ++I E + R++ F Sbjct: 9 LYADTCAAHTLVWFRQNLRIRDNAALCAAVAEG-LPVIGIWIDDAET-----DNPRRAAF 62 Query: 61 IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120 S ++ + L+ +GI F S L ++ + + + + D Sbjct: 63 YRQSAAELAQGLAGRGIPFYTAA------SPAGLVRLAVRLNTRAVIADESHTFADKLTD 116 Query: 121 KLLEKRLQHRVICKSF--DDSV-----LLPPGSILNHALQMYK----------------V 157 L L I +F D +V L+P G Y+ + Sbjct: 117 NALWHELDKHGIALTFVNDRAVFGKTDLIPDGGTAYADFDRYREVWLDRFSKQPPAGSDL 176 Query: 158 YTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALH 217 + +R+ +NL S P PA+ G P N GE A Sbjct: 177 FAAYRQPFPENL------SAPQPAVLSDGIFLPRNG-----------------GETAAWR 213 Query: 218 ILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSG 277 R+F ++ Y V +D P+ + TS + YLS G +SPR + E ++ Sbjct: 214 QWRRFLEQADSYSV-LKDFPSRKNTSLMGAYLSAGCISPRLLARKSLERRLN-------- 264 Query: 278 AFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHL-LQAWKQGYTGFPII 336 +W + +I R+F+ L + + + N + L L W+QG TG PII Sbjct: 265 --AWTDNIIRRDFFLQLALQHTD----------DDPSDGNPEHTLRLTLWQQGRTGIPII 312 Query: 337 DAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAA 396 DAAMR L+ G +H LR ++A F L + R GE +F QL D D A N G W+ AA Sbjct: 313 DAAMRCLHKTGSLHPALRRLSADFFCHVLNLPRREGEIWFARQLTDFDAAINQGNWRLAA 372 Query: 397 STGNDSVPYFRIFNPTIQGK--RFDPQGTFIRHWLPELNNVPTQYIHAP 443 S R P I + DP GTF+R +PEL ++ +H P Sbjct: 373 S---------RHTCPDIAAAAHKTDPDGTFVRRHIPELAHLSADTVHTP 412 >gi|85704991|ref|ZP_01036091.1| Deoxyribodipyrimidine photolyase [Roseovarius sp. 217] gi|85670313|gb|EAQ25174.1| Deoxyribodipyrimidine photolyase [Roseovarius sp. 217] Length = 528 Score = 123 bits (308), Expect = 7e-26, Method: Compositional matrix adjust. Identities = 119/503 (23%), Positives = 188/503 (37%), Gaps = 83/503 (16%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 ++W + DLR+ D+ AL A +I ++I PE W + S RQ FI L ++ Sbjct: 38 ILWFKRDLRVQDHPALSHAARL--GPIIPLYIVEPEAWAEPDASERQYAFICECLESLRS 95 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLF----------YNRQYEINEVRRD 120 L+ G+ D++ L++ Q V L Y R ++ E R Sbjct: 96 DLAALGLSLVL----RVGDAVTVLEALRADQGVAHLVSHEETGNLWSYARDRKVAEWARG 151 Query: 121 KLLE----------KRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLV 170 + + +RL R + D V+ P +L +Q Sbjct: 152 QGVRWHEMPQSGVVRRLSSRDAWQGARDRVMRAP--VLG---------------AVQGAR 194 Query: 171 QADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYY 230 A + S +P +P + P + G + L F + Y Sbjct: 195 GAAVASDDLP--------SPEALGLMEACPLRQKG-----GRGAGVRALTSFVSTRGESY 241 Query: 231 VEQRDIP--AIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLN----- 283 P + S++SP+L+ G LS L+E P W Sbjct: 242 QRAMSSPLHGARACSRISPHLAFGTLS-------LREAVQAGAAAPTGRGPDWARSMRSF 294 Query: 284 --ELIWREFYRHLMAFYPSV---CMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDA 338 L WR+ + + P + C+ + ++ D+ L AW +G TG P +DA Sbjct: 295 QARLAWRDHFMQKLEDEPEIERRCLHPAYEGLRPRV---ADAVRLAAWSKGETGLPFVDA 351 Query: 339 AMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGW-QWAAS 397 MR L GW++ R+R + + L +DWR D + + W Q Sbjct: 352 CMRSLRATGWLNFRMRSMLMAVASYHLWLDWRSTGPVLARAFTDYEPGIH---WPQVQMQ 408 Query: 398 TGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND-LSLNY 456 +G + RI+NP QG DP G F R WLPEL +VP Y+ P +W + L Y Sbjct: 409 SGTTGMNTIRIYNPVKQGLDQDPSGEFTRRWLPELAHVPDAYLQRPWAWSEAEALLGRGY 468 Query: 457 PLPIVDHKKACHHTLNQYYAAKK 479 P PIVD +A +A ++ Sbjct: 469 PAPIVDPVEAARVAREAVWACRR 491 >gi|308126141|ref|ZP_05908184.2| cryptochrome dash [Vibrio parahaemolyticus AQ4037] gi|308110402|gb|EFO47942.1| cryptochrome dash [Vibrio parahaemolyticus AQ4037] Length = 445 Score = 123 bits (308), Expect = 8e-26, Method: Compositional matrix adjust. Identities = 125/449 (27%), Positives = 199/449 (44%), Gaps = 65/449 (14%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFI---ATP--EQWRQHGISAR-QSHFIY 62 + L W DLR+ DN L A D +++ ++ TP + Q R + FI Sbjct: 5 IGLYWFTFDLRLHDNLLLVNASSFLD-ELVCLYCRPSVTPFLHHFAQEATLGRARQKFID 63 Query: 63 ASLLQVQKSLSQKG-----IVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEV 117 ASL ++ +L Q G + +Q + +I++L VT L+ + +E Sbjct: 64 ASLCELNDALGQLGQRLWTLDLPPYQALRY--AIQYLG-------VTHLYADAMAGSDEQ 114 Query: 118 RRDKLLEKRLQHRVICKS-----FDDSVLLPPGSILNHALQMYKVYTPFRKAL----IQN 168 L+ H VI + FD+S L P ++ + + + +T FRK + I + Sbjct: 115 SILHKLQDEYPHLVIVQHAVRSLFDESKL--PFTLPD----LPETFTQFRKCVEGIDIAH 168 Query: 169 LVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNAL-HILRKFCKEKV 227 + A R P+P + +P + F +F GE + L H R F Sbjct: 169 PIDAPSRLPPMP--------KDAQLPTLSSFYFDE-SALFSGGEWSGLAHCRRYFSSGLA 219 Query: 228 YYYVEQRD-IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELI 286 Y E R+ + + +++ SP+L++G +SPR + LK+ + + EL+ Sbjct: 220 SSYKETRNGLDGMAYSTKFSPWLALGCVSPRMIYAMLKQ--YEQTQGANDSTYWIYFELL 277 Query: 287 WREF-------YRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAA 339 WRE+ Y+ + + + P + +H Q WK G T +PI++A Sbjct: 278 WREYFYWYARCYQQRLFRFGGIRNQPPLTSFY--------AHRFQQWKNGTTQYPIVNAC 329 Query: 340 MRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTG 399 M QLN G+M NR R + AS LV +L +DWR G YF +QL+D D+ SN G WQ+ A G Sbjct: 330 MHQLNHTGYMSNRGRQLVASCLVHELGLDWRYGAAYFETQLIDYDVCSNWGNWQYLAGVG 389 Query: 400 NDSVPYFRIFNPTIQGKRFDPQGTFIRHW 428 D R FN Q + +DP FI W Sbjct: 390 ADPRGS-RQFNLEKQTQMYDPNHEFIERW 417 >gi|297539501|ref|YP_003675270.1| Deoxyribodipyrimidine photo-lyase [Methylotenera sp. 301] gi|297258848|gb|ADI30693.1| Deoxyribodipyrimidine photo-lyase [Methylotenera sp. 301] Length = 528 Score = 123 bits (308), Expect = 8e-26, Method: Compositional matrix adjust. Identities = 128/489 (26%), Positives = 212/489 (43%), Gaps = 58/489 (11%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 V++VW + DLRI D+ AL+ AC +V+ +F W + + F+ L+ + Sbjct: 5 VYIVWFKRDLRIQDHAALFEACE--LGQVLPIFTWDSSVWNGGDYATQHQMFVEECLVSL 62 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRR-DKLLEKRL 127 +++L G+ IE L+ + R+ L + + N + DK + Sbjct: 63 RRNLQTIGLSL----LEVRGGIIEVLNHIAMFYRIGGLHSHEETGNNNTYQLDKAVAS-- 116 Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187 CK+ + + P + + L+ ++T A+ + + A LP A T P Sbjct: 117 ----WCKAQNVNWHEYPHNGVVRRLKNRDIWT----AVWEKRMSAQTMPLPTQAKMATLP 168 Query: 188 --VTPSNIPRFFDYPFQAIDPMF-PIGEQNALHILRKFCKEKVYYYVEQRDIP--AIQGT 242 + P+N Y QA P G + A +L F + Y P + Sbjct: 169 LDILPNNDVSHLRYT-QADKPFRQKGGREEASRVLHTFLNGRGSRYRGGISSPLSSESAG 227 Query: 243 SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKS-------GAFSWLNELIWREFYRHLM 295 S+LSPYL+ GVLS R+ L+++ + P + G S+ + L W + + Sbjct: 228 SRLSPYLAWGVLSMREVVQNLRQKKSSIQASPSTYPNGLLAGLASFESRLHWHCHFMQKL 287 Query: 296 AFYPSV---CMGKPFIPWTEKIEWNKD-SHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHN 351 P++ + F + ++ + + + L AWK G TG+P++DA M L GW++ Sbjct: 288 ESEPAIEYENLHPAFNGFRDQSYASAELQNRLTAWKAGQTGWPLVDACMAMLRDTGWINF 347 Query: 352 RLR---MITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWA---ASTGNDSVPY 405 R+R M TAS+L L + WR + + LD + G W+ +G + Sbjct: 348 RMRAMLMSTASYL---LWLHWRETGLHLAREFLDYE-----PGIHWSQVQMQSGTTGINT 399 Query: 406 FRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSL--------NYP 457 RI+NP Q K DP+G F+R WLP L NVP +I P WL L L +YP Sbjct: 400 LRIYNPVKQAKDQDPEGIFVRRWLPALRNVPNTWIFQP--WLMPESLQLEYGCRIGIDYP 457 Query: 458 LPIVDHKKA 466 P+V+ +A Sbjct: 458 APLVNIDQA 466 >gi|83642974|ref|YP_431409.1| deoxyribodipyrimidine photolyase [Hahella chejuensis KCTC 2396] gi|83631017|gb|ABC26984.1| Deoxyribodipyrimidine photolyase [Hahella chejuensis KCTC 2396] Length = 491 Score = 123 bits (308), Expect = 8e-26, Method: Compositional matrix adjust. Identities = 131/483 (27%), Positives = 208/483 (43%), Gaps = 50/483 (10%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M+V +VW + DLR+TD+ LY A V +++A PE W Q R+ F+ +L Sbjct: 1 MTVRVVWFKRDLRVTDHGPLYHAARQ--GPVAPLYVAEPEYWAQPDAGERRWGFVRETLQ 58 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEV-RRDKLLEK 125 ++ ++LS+ G + D I L+ + V +L+ +++ + RR++++ Sbjct: 59 ELDQTLSKLGQPLWFMH----DSMINVLEYLKDRFGVFELYSHQETGVQWCNRRNQIV-- 112 Query: 126 RLQHRVICKSFDDSVLL---PPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAI 182 R C+ + VL P +L A + ++ + Q + +SLP+ Sbjct: 113 ----REWCRR--NGVLWREWPVCGVLRRATAAERWQAAWKDFMAQTRYPSP-KSLPMLG- 164 Query: 183 RLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPA--IQ 240 T P+ P P G A L+ F + + Y PA + Sbjct: 165 --TSPLKPEAWPETIGADPTPCVLRQAGGRAAAAQELKSFLQTRGINYFRDTHYPATSFE 222 Query: 241 GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSW-------LNELIWREFYRH 293 G S+LSPYLS GV+S R+ +++ L I + W L+ L R Y Sbjct: 223 GGSRLSPYLSHGVISLREA---VQQSRRALQIYHTHRSADWVKSMTEFLSRLYLRSHYMQ 279 Query: 294 LMAFYP---SVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMH 350 M P S+ + K F E D +AWK G TGFP+IDAAM+ L GW++ Sbjct: 280 QMEDEPGMESINLHKSFNGLREH---QFDEAKFEAWKNGETGFPLIDAAMKALINYGWIN 336 Query: 351 NRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNG-GWQWAASTGNDSVPYFRIF 409 +LR + SF L + WR + D D A + Q+A +TG +I+ Sbjct: 337 YQLRGLLMSFAANQLWLHWREPALHMARLSTDYDPAVHFPLTQQFAGTTGMFEQ---KIY 393 Query: 410 NPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAP------HSWLDKNDLSLNYPLPIVDH 463 NP + R DP G FIR L V Y+HAP + L +YP+PI+++ Sbjct: 394 NPVTESHRLDPAGKFIRAECSALREVSDAYLHAPWKMPHAEQIMSGCVLGQDYPMPIINN 453 Query: 464 KKA 466 + A Sbjct: 454 EDA 456 >gi|15641816|ref|NP_231448.1| deoxyribodipyrimidine photolyase [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121585836|ref|ZP_01675630.1| RNA-binding cryptochrome Cry1 [Vibrio cholerae 2740-80] gi|147674040|ref|YP_001217353.1| RNA-binding cryptochrome Cry1 [Vibrio cholerae O395] gi|153817785|ref|ZP_01970452.1| cryptochrome, DASH family [Vibrio cholerae NCTC 8457] gi|153821143|ref|ZP_01973810.1| RNA-binding cryptochrome Cry1 [Vibrio cholerae B33] gi|227081943|ref|YP_002810494.1| deoxyribodipyrimidine photolyase [Vibrio cholerae M66-2] gi|229508087|ref|ZP_04397592.1| deoxyribodipyrimidine photolyase single-strand-specific [Vibrio cholerae BX 330286] gi|229511674|ref|ZP_04401153.1| deoxyribodipyrimidine photolyase single-strand-specific [Vibrio cholerae B33] gi|229518813|ref|ZP_04408256.1| deoxyribodipyrimidine photolyase single-strand-specific [Vibrio cholerae RC9] gi|229607648|ref|YP_002878296.1| deoxyribodipyrimidine photolyase single-strand-specific [Vibrio cholerae MJ-1236] gi|254848903|ref|ZP_05238253.1| cryptochrome DASH [Vibrio cholerae MO10] gi|255745421|ref|ZP_05419370.1| deoxyribodipyrimidine photolyase single-strand-specific [Vibrio cholera CIRS 101] gi|262169806|ref|ZP_06037497.1| deoxyribodipyrimidine photolyase single-strand-specific [Vibrio cholerae RC27] gi|81858080|sp|Q9KR33|CRYD_VIBCH RecName: Full=Cryptochrome DASH gi|9656339|gb|AAF94962.1| deoxyribodipyrimidine photolyase [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121549974|gb|EAX59992.1| RNA-binding cryptochrome Cry1 [Vibrio cholerae 2740-80] gi|126511605|gb|EAZ74199.1| cryptochrome, DASH family [Vibrio cholerae NCTC 8457] gi|126521339|gb|EAZ78562.1| RNA-binding cryptochrome Cry1 [Vibrio cholerae B33] gi|146315923|gb|ABQ20462.1| RNA-binding cryptochrome Cry1 [Vibrio cholerae O395] gi|227009831|gb|ACP06043.1| deoxyribodipyrimidine photolyase [Vibrio cholerae M66-2] gi|227013713|gb|ACP09923.1| deoxyribodipyrimidine photolyase [Vibrio cholerae O395] gi|229343502|gb|EEO08477.1| deoxyribodipyrimidine photolyase single-strand-specific [Vibrio cholerae RC9] gi|229351639|gb|EEO16580.1| deoxyribodipyrimidine photolyase single-strand-specific [Vibrio cholerae B33] gi|229355592|gb|EEO20513.1| deoxyribodipyrimidine photolyase single-strand-specific [Vibrio cholerae BX 330286] gi|229370303|gb|ACQ60726.1| deoxyribodipyrimidine photolyase single-strand-specific [Vibrio cholerae MJ-1236] gi|254844608|gb|EET23022.1| cryptochrome DASH [Vibrio cholerae MO10] gi|255737251|gb|EET92647.1| deoxyribodipyrimidine photolyase single-strand-specific [Vibrio cholera CIRS 101] gi|262022040|gb|EEY40750.1| deoxyribodipyrimidine photolyase single-strand-specific [Vibrio cholerae RC27] Length = 461 Score = 122 bits (307), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 119/430 (27%), Positives = 184/430 (42%), Gaps = 27/430 (6%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKV-------IAVFIATPEQWRQHGISARQSHFI 61 + L W NDLR+ DN L A D + I F+A Q Q G + ++ F+ Sbjct: 5 IGLYWFTNDLRVNDNPLLEQASQQVDRLICLYCYPSITPFLARYAQQTQWGEAKKR--FL 62 Query: 62 YASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDK 121 +L + SLS G + + L Q +T ++ + +E + Sbjct: 63 NQTLADLDHSLSTLGQKLWVTPLLPY----QALRHLLTQVEITDIYVDAVAGSDERQAIA 118 Query: 122 LLEKRLQHRVICKSFDDSVLLPPGSILNHALQ-MYKVYTPFRKALIQNLVQADLRSLPVP 180 + + I + S+L P L AL+ + +T FRK V+ S P+ Sbjct: 119 RIHQDFSSVHIHQQALHSLLSEPQ--LPFALEALPSTFTQFRKQ-----VETISLSAPMG 171 Query: 181 AIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNAL-HILRKFCKEKVYYYVEQRD-IPA 238 + P+ D + F GEQ L H F Y E R+ + Sbjct: 172 YPHVLPPIEQGWQLPLMDIVTEPNHSAFVGGEQAGLTHCQNYFSSLLPSRYKETRNGLDG 231 Query: 239 IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFY 298 + +++ SP+L++G +SP+ + L+ + + + EL+WRE++ Y Sbjct: 232 MDYSTKFSPWLALGAVSPKTIYAMLQR--YEAVHGANDSTYWIFFELLWREYFYWYARRY 289 Query: 299 PSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITA 358 + I + + LQ WK G T FPI++A MRQLN G+M NR R + A Sbjct: 290 GAKLFRFSGIGEKKPLTSFYAQRFLQ-WKHGETPFPIVNACMRQLNQTGYMSNRGRQLVA 348 Query: 359 SFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRF 418 S LV +L +DWR G YF +QL+D D+ SN G WQ+ A G D R FN Q + Sbjct: 349 SCLVHELGLDWRYGAAYFETQLVDYDVGSNWGNWQYLAGVGADPRGS-RQFNLEKQAHTY 407 Query: 419 DPQGTFIRHW 428 DP+G F+ W Sbjct: 408 DPKGEFVAKW 417 >gi|254805669|ref|YP_003083890.1| Deoxyribodipyrimidine photolyase [Neisseria meningitidis alpha14] gi|254669211|emb|CBA08013.1| Deoxyribodipyrimidine photolyase [Neisseria meningitidis alpha14] Length = 433 Score = 122 bits (307), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 129/469 (27%), Positives = 192/469 (40%), Gaps = 91/469 (19%) Query: 1 MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHF 60 + A T + LVW R +LRI DN AL AA VI ++I E + R++ F Sbjct: 9 LYADTRAAHTLVWFRQNLRIRDNAALCAAVAEG-LPVIGIWIDDAET-----DNPRRAAF 62 Query: 61 IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120 S ++ + L+ +GI Y S + L ++ + + + + + D Sbjct: 63 YRQSAAELAQGLAGRGIPL-YTAASPAE-----LVRLAVRLNIRAVIADESHTFADKLAD 116 Query: 121 KLLEKRLQHRVICKSF--DDSV-----LLPPGSILNHALQMYK----------------V 157 L L I +F D +V L+P G + Y+ + Sbjct: 117 NALWHELDKHGIALTFVNDRAVFGKTDLIPDGGTAHTDFDRYREVWLDRFSKQPPAGPDL 176 Query: 158 YTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALH 217 + +R+ +NL S P PA G P N GE A Sbjct: 177 FAAYRQPFPENL------SAPPPAALSDGIFLPQNS-----------------GETAAWR 213 Query: 218 ILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSG 277 R+F ++ Y V +D P+ + TS + YLS G +SPR L E ++ + Sbjct: 214 QWRRFLEQADSYSV-LKDFPSRKHTSLMGAYLSAGCISPRL----LARESLERRLN---- 264 Query: 278 AFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHL-LQAWKQGYTGFPII 336 +W + +I R+F+ L Y + + N + L L W+QG TG PII Sbjct: 265 --AWADNIIRRDFFLQLALQYAD----------DDPSDGNPEHTLRLTLWQQGQTGIPII 312 Query: 337 DAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAA 396 DAAMR L+ G +H LR ++A F L + R GE +F QL D D A N G W+ AA Sbjct: 313 DAAMRCLHKTGSLHPALRRLSADFFCHVLNLPRREGEIWFARQLTDFDAAINQGNWRLAA 372 Query: 397 STGNDSVPYFRIFNPTIQGK--RFDPQGTFIRHWLPELNNVPTQYIHAP 443 S R P I R DP GTFI+ +PEL ++ +H P Sbjct: 373 S---------RHTCPDIAAASYRTDPDGTFIKRHIPELAHLSADTVHTP 412 >gi|254423250|ref|ZP_05036968.1| FAD binding domain of DNA photolyase protein [Synechococcus sp. PCC 7335] gi|196190739|gb|EDX85703.1| FAD binding domain of DNA photolyase protein [Synechococcus sp. PCC 7335] Length = 527 Score = 122 bits (307), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 118/487 (24%), Positives = 202/487 (41%), Gaps = 48/487 (9%) Query: 12 VWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQKS 71 +W + D R+ D++ L A V+ +++ P+ W S RQ F+ + + ++ Sbjct: 1 MWFKKDFRLFDHRCLTFAAQK--GPVLPLYVVEPDYWALEDTSYRQYLFLKGCVEETIEA 58 Query: 72 LSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEIN-EVRRDKLLEKRLQHR 130 L + G D +E L +L+ +++ N +RDK + K Q Sbjct: 59 LEELGGSMAIAS----GDVVEVLSRLQKTYGNIELWAHQETGNNWTFQRDKAVRKWCQQA 114 Query: 131 VICKSFDDSVLLPPGSILNH---ALQMYKVYTPFRKAL---IQNLVQADLRSLPVPAIRL 184 + + GS +N A Q + +L I + ++ R++P P + Sbjct: 115 GVAFHEPLQFGVWRGSKINRDHWAKQWDSLMAEPIASLPESISFVAHSEDRTMPSPEV-- 172 Query: 185 TGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAI--QGT 242 I + P G AL +L F E+ Y P G Sbjct: 173 ------------LGLKHDGITALQPPGRNAALQVLSSFLYERGERYRTDMSSPVTGESGC 220 Query: 243 SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSW-------LNELIWREFYRHLM 295 S+LSPYL+ G +S R+ + ++ ++ PK+ +W + L W + + Sbjct: 221 SRLSPYLAYGAISMRETYQATQKRIAEVAAMPKAERGTWAGSLSSFVGRLHWHCHFTQKL 280 Query: 296 AFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRM 355 P + +T + + L+A+ +G TG+P +DA MR L GW++ R+R Sbjct: 281 ELEPELEWLPMARAYTGIRDDGDHAIKLRAFAEGQTGYPFVDACMRYLRATGWINFRMRA 340 Query: 356 ITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAAS---TGNDSVPYFRIFNPT 412 + SF DL + W+ + D G W S +G + RI++P Sbjct: 341 MLMSFASYDLWLPWQKSGDVLARLFTD-----YEPGIHWPQSQMQSGVTGINAIRIYSPI 395 Query: 413 IQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLN 472 QG D +GTF R W+PEL +P + + P WL + +LS YP PIV+HK+A + Sbjct: 396 KQGLDQDIEGTFTRQWVPELAALPDEILQTP--WLLEGELS--YPPPIVEHKEAAALAKS 451 Query: 473 QYYAAKK 479 + +A KK Sbjct: 452 RLWAIKK 458 >gi|317036499|ref|XP_001397458.2| DNA photolyase [Aspergillus niger CBS 513.88] Length = 641 Score = 122 bits (307), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 95/294 (32%), Positives = 143/294 (48%), Gaps = 36/294 (12%) Query: 184 LTGPVTPSNIPRFFDY---PFQAIDPMFPIGEQNALHILRKFCKEKVYY---YVEQRDIP 237 + GP +IP + P QA P GE AL +L + ++ Y + + + P Sbjct: 224 IAGPKGDFSIPTLDELSIDPSQATSPHHG-GESIALEMLTTYLQQNEDYIATFEKPKTSP 282 Query: 238 AI---QGTSQLSPYLSIGVLSPRQCWNRLKEEFV--DLLIKPKSGAFSWL-NELIWRE-F 290 A Q T+ LSP+L G LS R+ W+ +++ + KP S + L +L++RE F Sbjct: 283 AAFHPQATTLLSPHLHFGSLSVRKFWHDVQDTLQQRESAHKPTSDLPTNLPGQLLFREMF 342 Query: 291 YRHLMAFYPSVCMGKP-----FIPWTEKIEWNKDSHLL---------------QAWKQGY 330 + A P + F+PW + +K++ L+ + WK+G Sbjct: 343 FAAQAALGPVYAQTRGNKIVRFVPWHLQSNHDKETGLVDRTYTVDDEQAEVWFRRWKEGR 402 Query: 331 TGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD-LLVDWRIGEEYFMSQLLDGDLASNN 389 TGFP IDA MRQL GW+H+ R A FL + V W G E F L+D + ASN Sbjct: 403 TGFPWIDALMRQLKNEGWIHHLGRHSVACFLTRGGCYVHWERGAEVFEEWLIDHETASNV 462 Query: 390 GGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAP 443 G W W + T Y R ++P GK++DP+G FIRH++PEL + +YI+ P Sbjct: 463 GNWMWLSCTAF-FTQYNRCYSPVAFGKKWDPEGRFIRHYIPELEHYDKKYIYEP 515 >gi|240116558|ref|ZP_04730620.1| putative deoxyribodopyrimidine photolyase [Neisseria gonorrhoeae PID18] gi|260439681|ref|ZP_05793497.1| putative deoxyribodopyrimidine photolyase [Neisseria gonorrhoeae DGI2] gi|268602227|ref|ZP_06136394.1| deoxyribodopyrimidine photolyase [Neisseria gonorrhoeae PID18] gi|291042923|ref|ZP_06568664.1| deoxyribodopyrimidine photolyase [Neisseria gonorrhoeae DGI2] gi|268586358|gb|EEZ51034.1| deoxyribodopyrimidine photolyase [Neisseria gonorrhoeae PID18] gi|291013357|gb|EFE05323.1| deoxyribodopyrimidine photolyase [Neisseria gonorrhoeae DGI2] Length = 432 Score = 122 bits (306), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 129/463 (27%), Positives = 189/463 (40%), Gaps = 79/463 (17%) Query: 1 MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHF 60 + A T + LVW R +LRI DN AL AA + VI ++I E + R++ F Sbjct: 9 LYADTRAAHTLVWFRQNLRIRDNAALCAAVAEG-SPVIGIWIDDAET-----DNPRRAAF 62 Query: 61 IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120 S ++ + L+++GI S L ++ + + + + + D Sbjct: 63 YRQSAAELAQGLARRGIPLYTAA------SPAGLVRLAVRLNIRAVIADESHTFADKLAD 116 Query: 121 KLLEKRLQHRVICKSF--DDSVL----LPPGSILNHA---------LQMYKVYTPFRKAL 165 L L I +F D SV L PG+ H L + P L Sbjct: 117 NALWHELDKHGIALTFVNDRSVFGKTDLTPGNGTAHTDFNRYREVWLDRFSKQPPAGSDL 176 Query: 166 IQNLVQADLRSLPVP--AIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFC 223 Q +LP P A G P N GE A R+F Sbjct: 177 FAAYRQPFPENLPAPPPAALSDGIFLPQNG-----------------GETAAWRQWRRFL 219 Query: 224 KEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLN 283 ++ Y V +D P+ + TS + YLS+G +SPR L E ++ + +W + Sbjct: 220 EQAASYSV-LKDFPSRKNTSLMGAYLSVGCISPRL----LARESLERRLN------AWAD 268 Query: 284 ELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHL-LQAWKQGYTGFPIIDAAMRQ 342 +I R+F+ L + + + N + L L W+QG TG PIIDAAMR Sbjct: 269 NIIRRDFFLQLALQHAD----------DDPSDGNPEHTLRLTLWQQGRTGIPIIDAAMRC 318 Query: 343 LNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDS 402 L+ G +H LR ++A F L + R GE +F QL D D A N G W+ AAS Sbjct: 319 LHKTGSLHPALRRLSADFFCHVLNLPRREGEIWFARQLTDFDAAINQGNWRLAAS----- 373 Query: 403 VPYFRIFNPTIQGK--RFDPQGTFIRHWLPELNNVPTQYIHAP 443 R P I R DP GTFI+ +PEL ++ +H P Sbjct: 374 ----RHTCPDIAAASYRTDPDGTFIKRHIPELAHLSADTVHTP 412 >gi|257373039|ref|YP_003175813.1| deoxyribodipyrimidine photo-lyase [Halomicrobium mukohataei DSM 12286] gi|257167763|gb|ACV49455.1| Deoxyribodipyrimidine photo-lyase [Halomicrobium mukohataei DSM 12286] Length = 526 Score = 122 bits (306), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 86/299 (28%), Positives = 140/299 (46%), Gaps = 17/299 (5%) Query: 184 LTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIP--AIQG 241 L G V+ ++I R +D A + P G LR+F + + Y P A G Sbjct: 180 LPGTVSVADIERTYDV-HAAKTTVPPGGRAAGARRLRQFVAD-IEQYPGNISAPTDARTG 237 Query: 242 TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSV 301 TS LSP+L G LS R+ + + + P +G +++ L W + Y + + Sbjct: 238 TSGLSPHLRFGSLSVREVYRYVMDN-----APPCTGREMFVSRLYWNKHYHQKLEDWSGW 292 Query: 302 CMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFL 361 + D L+ AWK+G TGFP++DA+MR L GW++ R+R + AS Sbjct: 293 TTTAVNPAMRGCRAESHDPELVTAWKRGTTGFPMVDASMRCLVETGWLNFRMRAMCASVF 352 Query: 362 VKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQ 421 W+IG +++ L+D D A N WQ A T ++ RI+NP Q + DP Sbjct: 353 ADLFQQPWQIGADFYHYHLIDADPAINYTQWQSQAGTVGTNL--MRIYNPIKQVRDNDPD 410 Query: 422 GTFIRHWLPELNNVPTQYIHAPHSW------LDKNDLSLNYPLPIVDHKKACHHTLNQY 474 GTF+ ++PEL +P +Y+ P ++ +YP P+V+++ A + +Y Sbjct: 411 GTFVSTYVPELAPLPAEYLPRPEKTPLHVQEACGVEIGTDYPYPVVEYEAARQRAIERY 469 >gi|87303611|ref|ZP_01086390.1| Deoxyribodipyrimidine photolyase [Synechococcus sp. WH 5701] gi|87281835|gb|EAQ73799.1| Deoxyribodipyrimidine photolyase [Synechococcus sp. WH 5701] Length = 508 Score = 122 bits (306), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 124/502 (24%), Positives = 198/502 (39%), Gaps = 78/502 (15%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 V +VW + DLR+ D++ L A + V+ + + PE WRQ SARQ F SL + Sbjct: 4 VQVVWFKRDLRVADHQPLLQA--SFLGPVLPLMVVEPELWRQSDASARQWDFCAESLEDL 61 Query: 69 QKSLSQKG-----------IVFQYHQC--------SNFDDSIEWLDSYCLQQRVTKLFYN 109 +++L+ G V + +C S+ + W +Y +RV + + Sbjct: 62 RRALAGLGQPLVVRIGTVEEVLERARCRFGIAGLWSHQETGNGW--TYARDRRVARWAKS 119 Query: 110 RQYEINEVRRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNL 169 E+ ++ +RL R ++ + P ALQ P I + Sbjct: 120 HSIPWIEIPSFGVI-RRLGSRNGWARRWEARMAEPMVPPPEALQPLAGLDP---GAIPSA 175 Query: 170 VQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYY 229 + L P P ++ G Q +L F + Sbjct: 176 SELGLAPDPCPGRQVGG-------------------------RQQGQAVLESFLNGRGAR 210 Query: 230 YVEQRDIP--AIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIW 287 Y + P A + S+LSP+L+ G LS R E V L + + + L W Sbjct: 211 YHRELSSPRTAFESCSRLSPHLAWGTLSMR--------EVVQLSRRRGAAPVGFEARLHW 262 Query: 288 REFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIG 347 + + P + + P T + + D L AW +G TG P +DA MR L G Sbjct: 263 HCHFIQKLESQPDLEF-RELHPLTAGLR-SSDPERLAAWAEGRTGLPFVDACMRALIATG 320 Query: 348 WMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWA---ASTGNDSVP 404 W++ R+R + S L + WR + +D G W+ +G + Sbjct: 321 WINFRMRAMLMSVASYHLWLPWRESGLHLARLFVD-----YEPGIHWSQCQMQSGTTGIN 375 Query: 405 YFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND------LSLNYPL 458 RI+NP QG+ DP G FIR WLPEL VP ++H P + L L+YPL Sbjct: 376 TIRIYNPIKQGQDHDPGGDFIRQWLPELAAVPAVHLHEPWTMAVITQQRVGCVLGLHYPL 435 Query: 459 PIVDHKKACHHTLNQYYAAKKQ 480 PIV+ +A + +A +++ Sbjct: 436 PIVEPNQAAREARVRIWAQRQE 457 >gi|308049734|ref|YP_003913300.1| deoxyribodipyrimidine photo-lyase (single-stranded DNA-specific) [Ferrimonas balearica DSM 9799] gi|307631924|gb|ADN76226.1| deoxyribodipyrimidine photo-lyase (single-stranded DNA-specific) [Ferrimonas balearica DSM 9799] Length = 435 Score = 122 bits (306), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 117/442 (26%), Positives = 192/442 (43%), Gaps = 49/442 (11%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATP-----EQWRQHGISARQSHFI 61 M L+W R+DLR+ DN AL A +A ++ ++ P + W+ + FI Sbjct: 1 MKRALLWFRHDLRLDDNPALLRAAQAKEA-LLCLYCIEPRWFVADNWQSRRVGDHPWRFI 59 Query: 62 YASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDK 121 SLL + L G D + + KL + E R+ Sbjct: 60 SESLLDLANRLEALGQQL----VIRIGDPNTLIPGLMRNHWIDKLICTAPFGEEERRQYL 115 Query: 122 LLEKRL-QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVP 180 L++ + +HR C+ + L + ++ ++ FR+ +Q L + R L P Sbjct: 116 ALKQEVGEHR--CEVWQSHTLFTLEQLPFALDELPPTFSQFRRR-VQRL---EWRPLYPP 169 Query: 181 AIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNA-LHILRKFCKEKVYYYVEQRD-IPA 238 L P+ ++ +P + G+ A H+ +Y + R+ + Sbjct: 170 VTELPKPLALTS--ETPPPVSTPPNPQYQGGQTAAEAHLAHYLAGAAPKHYKQTRNALDD 227 Query: 239 IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGA---FSWLN-ELIWREFYR-- 292 +++LSP+L+ G LS R +L+ + + GA W+ EL+WRE+++ Sbjct: 228 WSSSTKLSPWLAQGCLSARTAVAQLEA------YEAQHGANESTEWIQVELLWREYFQWL 281 Query: 293 ------HLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTI 346 L AF + + +P + E+ W QG T +PI++AAM QLN Sbjct: 282 ALAHGHRLFAFTGTSGVRRPCCFYPERFA---------RWCQGQTPYPIVNAAMNQLNAT 332 Query: 347 GWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYF 406 G++ NR R + AS LV +L +DWR G YF QL+D D+A N G WQ+ A G D + Sbjct: 333 GFLSNRARQLVASALVHELGLDWRYGAAYFQQQLIDHDVACNYGNWQYLAGVGADPRGW- 391 Query: 407 RIFNPTIQGKRFDPQGTFIRHW 428 R F+ Q +DP G F+R W Sbjct: 392 RHFDLDKQTALYDPDGAFVRQW 413 >gi|229523842|ref|ZP_04413247.1| deoxyribodipyrimidine photolyase single-strand-specific [Vibrio cholerae bv. albensis VL426] gi|229337423|gb|EEO02440.1| deoxyribodipyrimidine photolyase single-strand-specific [Vibrio cholerae bv. albensis VL426] Length = 461 Score = 122 bits (306), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 120/430 (27%), Positives = 183/430 (42%), Gaps = 27/430 (6%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKV-------IAVFIATPEQWRQHGISARQSHFI 61 + L W NDLR+ DN L A D + I F+A Q Q S + F+ Sbjct: 5 IGLYWFTNDLRVNDNPLLEQASQQVDRLICLYCYPSITPFLARYAQ--QTQWSEAKKWFL 62 Query: 62 YASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDK 121 +L + SLS G + + L Q +T ++ + +E + Sbjct: 63 NQTLADLDHSLSTLGQKLWVTPLLPY----QALRHLLTQVEITDIYVDAMAGSDERQAIA 118 Query: 122 LLEKRLQHRVICKSFDDSVLLPPGSILNHALQ-MYKVYTPFRKALIQNLVQADLRSLPVP 180 + + I + S+L P L AL+ + +T FRK V+ S P+ Sbjct: 119 RIHQDFSSVHIHQQALHSLLSEPQ--LPFALEALPSTFTQFRKQ-----VETLSLSAPMG 171 Query: 181 AIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNAL-HILRKFCKEKVYYYVEQRD-IPA 238 R+ P+ D + F GEQ L H F Y E R+ + Sbjct: 172 YPRVLPPIEQGWQLPLMDIVTEPNHSAFIGGEQAGLTHCQNYFSSLLPSRYKETRNGLDG 231 Query: 239 IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFY 298 + +++ SP+L++G +SP+ + L+ + + + EL+WRE++ Y Sbjct: 232 MDYSTKFSPWLALGAVSPKTIYAMLQR--YEAVHGANDSTYWIFFELLWREYFYWYARRY 289 Query: 299 PSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITA 358 + I + + LQ WK G T FPI++A MRQLN G+M NR R + A Sbjct: 290 GAKLFRFSGIGEKKPLTSFYAQRFLQ-WKHGVTPFPIVNACMRQLNQTGYMSNRGRQLVA 348 Query: 359 SFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRF 418 S LV +L +DWR G YF +QL+D D+ SN G WQ+ A G D R FN Q + Sbjct: 349 SCLVHELGLDWRYGAAYFETQLVDYDVGSNWGNWQYLAGVGADPRGS-RQFNLAKQTHTY 407 Query: 419 DPQGTFIRHW 428 DP+G F+ W Sbjct: 408 DPKGEFVAKW 417 >gi|163803660|ref|ZP_02197523.1| deoxyribodipyrimidine photolyase [Vibrio sp. AND4] gi|159172532|gb|EDP57394.1| deoxyribodipyrimidine photolyase [Vibrio sp. AND4] Length = 446 Score = 122 bits (306), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 138/493 (27%), Positives = 210/493 (42%), Gaps = 88/493 (17%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAV--------FIATPEQWRQHGISARQSHF 60 + L W N+LRI DN L A + +++I + F+ Q Q G + F Sbjct: 5 IGLYWFTNELRIHDN-PLLAEVDKAVSELICIYCYPKLPPFLTHFAQEAQFG--QNKLRF 61 Query: 61 IYASLLQVQKSLSQKGIVFQYHQC---SNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEV 117 + SL + SL+ + Q +IE LD VT L+ + ++E Sbjct: 62 LDESLHCLNLSLNARNQRLQVVDLLPYQAIKHAIEKLD-------VTHLYCDAFSGVDEQ 114 Query: 118 RRDKLLEKRLQHRVICKSFDDSVLLP---PGSILNHALQMYKVYTPFRKALIQNLVQ--- 171 + H IC+ S+ P S+ N + +T FRK + + V Sbjct: 115 DVIDKIRSDFPHLTICQREVRSLFALDDLPFSLEN----LPGTFTKFRKLVEKLPVSKPV 170 Query: 172 ADLRSLP-------VPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNAL-HILRKFC 223 A + SLP +P +RL G +F GEQ L H + F Sbjct: 171 ATVSSLPPIPEGLALPTLRLIG---------------DGKSYLFNGGEQAGLEHCQQYFS 215 Query: 224 KEKVYYYVEQRD-IPAIQGTSQLSPYLSIGVLSPRQ-CWNRLKEEFVDLLIKPKSGAFSW 281 Y + R+ + ++ +++ SP+L+ G LSP+ C + E V+ + + W Sbjct: 216 SISASDYKQTRNGLDGMEYSTKFSPWLAHGCLSPKVICAMLSRYEHVN----GANDSTYW 271 Query: 282 LN-ELIWREF-------YRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGF 333 + EL+WRE+ Y+H + + + P + H Q WKQG T F Sbjct: 272 IYFELLWREYFYWYARKYKHQLFRFGGIRNQVPLTSFY--------GHRFQQWKQGETPF 323 Query: 334 PIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQ 393 PI++A M QLN G+M NR R + AS LV +L +DWR G YF SQL+D D+ASN G WQ Sbjct: 324 PIVNACMHQLNETGYMSNRGRQLVASCLVHELGLDWRYGAAYFESQLIDYDVASNWGNWQ 383 Query: 394 WAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLS 453 + A G D R FN Q + +DP FI W H + LD D+ Sbjct: 384 YLAGVGADPRGA-RQFNLKKQTEIYDPNMAFINRWQG----------HCVDAHLDSVDM- 431 Query: 454 LNYPLPIVDHKKA 466 +++P+ + H K Sbjct: 432 VDWPIMMDSHGKT 444 >gi|254489917|ref|ZP_05103112.1| cryptochrome, DASH family [Methylophaga thiooxidans DMS010] gi|224465002|gb|EEF81256.1| cryptochrome, DASH family [Methylophaga thiooxydans DMS010] Length = 441 Score = 122 bits (306), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 118/444 (26%), Positives = 196/444 (44%), Gaps = 40/444 (9%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFI-----ATPEQWRQHGISARQSHFIYASL 65 L W NDLR+ DN AL A N D ++I +F P + + ++ F+ SL Sbjct: 6 LFWFNNDLRVHDNPALLEASLNCD-RLICLFCYDTFWDKPTGFNAKPLGDKRRQFLLESL 64 Query: 66 LQVQKSLSQKG---IVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKL 122 +Q +L +G IV + D + + + V ++ + + E R+ + Sbjct: 65 NDLQHTLEARGQQLIVMK-------GDPVAIISELLSKYHVNHVYRSYHVGVYENRQWQH 117 Query: 123 LEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKAL----IQNLVQADLRSLP 178 L RV S+ L + + ++ FRK + I VQ ++L Sbjct: 118 LRADFP-RVQFDSYWTHSLFQQRQLPFDLTSLPDTFSQFRKIVESLPIDKPVQMP-KTLA 175 Query: 179 VPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEK--VYYYVEQRDI 236 VP L P +P ++ F GE+ A+ + + Y + + D+ Sbjct: 176 VPVSELHEDTLP--LP-----TYRNSQDHFTGGEKAAIEHMEAYFSSDYPAQYKLLRNDL 228 Query: 237 PAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMA 296 +++ S +L+ G LS ++ +L++ + + EL+WRE+++ A Sbjct: 229 DHWSHSTKFSAWLANGSLSVKRLLQQLRQ--FEKTHTANESTYWIFFELLWREYFQ-WYA 285 Query: 297 FYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMI 356 F + +P +KI Q W G T +P+++A M+QLN G+M NR R I Sbjct: 286 FRYRHKLFRPQGLGKKKITCCFYPERYQKWAHGNTPYPLVNALMKQLNDTGYMSNRGRQI 345 Query: 357 TASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGK 416 AS + +L +DWR G YF QL+D D+A+N G WQ+ A G D R FN Q + Sbjct: 346 VASCFINELELDWRFGAAYFEQQLIDYDVAANWGNWQYIAGVGADPRG-GRHFNIDKQQR 404 Query: 417 RFDPQGTFIRHW-----LPELNNV 435 ++DPQ TFI+ W P L++V Sbjct: 405 QYDPQQTFIQKWKGQVTAPRLDSV 428 >gi|261211882|ref|ZP_05926169.1| deoxyribodipyrimidine photolyase single-strand-specific [Vibrio sp. RC341] gi|260839232|gb|EEX65864.1| deoxyribodipyrimidine photolyase single-strand-specific [Vibrio sp. RC341] Length = 461 Score = 122 bits (305), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 122/435 (28%), Positives = 187/435 (42%), Gaps = 37/435 (8%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKV-------IAVFIATPEQWRQHGISARQSHFI 61 + L W NDLR+ DN L A D + I F+A Q Q G + ++ F+ Sbjct: 5 IGLYWFTNDLRVNDNPLLEQASQQVDRLICLYCYPSITPFLARYAQQTQWGEAKKR--FL 62 Query: 62 YASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDK 121 +L + SLS G + + L Q +T ++ + +E + Sbjct: 63 NQTLADLDHSLSTLGQKLWVTPLLPY----QALRHLLTQVEITDIYVDAVAGSDERQAIA 118 Query: 122 LLEKRLQHRVICKSFDDSVLLPPGSILNHALQ-MYKVYTPFRKALIQNLVQADLRSLPVP 180 + + I + S+L P L AL+ + +T FRK Q + SL P Sbjct: 119 RIHQDFSSVHIHQQALRSLLSEPQ--LPFALEALPSTFTQFRK-------QVETLSLSAP 169 Query: 181 AIRLTGPVTPSNIPRFFDYPFQAI--DP---MFPIGEQNAL-HILRKFCKEKVYYYVEQR 234 + P I + + P I +P F GEQ L H F Y E R Sbjct: 170 ---MGYPRVLPPIEQGWQLPLMGIVTEPNHSAFIGGEQAGLTHCQNYFSSMLPSRYKETR 226 Query: 235 D-IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRH 293 + + + +++ SP+L++G +SP+ + L+ + + + EL+WRE++ Sbjct: 227 NGLDGMDYSTKFSPWLALGAVSPKTIYAMLQR--YEAVHGANDSTYWIFFELLWREYFYW 284 Query: 294 LMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRL 353 Y + I + + LQ WK G T PI++A MRQLN G+M NR Sbjct: 285 YARRYGAKLFHFSGIGEKQPLTSFYAQRFLQ-WKHGETPVPIVNACMRQLNQTGYMSNRG 343 Query: 354 RMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTI 413 R + AS LV +L +DWR G YF +QL+D D+ SN G WQ+ A G D R FN Sbjct: 344 RQLVASCLVHELGLDWRYGAAYFETQLMDYDVGSNWGNWQYLAGVGADPRDS-RQFNLAK 402 Query: 414 QGKRFDPQGTFIRHW 428 Q +DP+G F+ W Sbjct: 403 QAHTYDPKGEFVAKW 417 >gi|46124775|ref|XP_386941.1| hypothetical protein FG06765.1 [Gibberella zeae PH-1] Length = 685 Score = 122 bits (305), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 93/283 (32%), Positives = 136/283 (48%), Gaps = 41/283 (14%) Query: 211 GEQNALHILRKFCKEKVYYYVEQR--DIPA---IQGTSQLSPYLSIGVLSPRQCWNRLKE 265 GE AL L + +K Y Q+ PA Q T+ LSP+L G LS R+ + R+K+ Sbjct: 292 GETLALKALDEIIADKKYTATFQKPKTSPAQFEPQATTLLSPHLHFGSLSVREFYWRVKD 351 Query: 266 EFVDLLIKPKSGAFSWLNELIWREFY---RHLMAFYPSVCMGKP---FIPWTEKIEWNKD 319 VD S S + +L++R+ Y + + + S P FIPW + + + Sbjct: 352 -VVDSYKGASSPPESLIGQLLFRDMYFAAQAALGYVFSQTANNPYCRFIPWHLPSKRDPE 410 Query: 320 SHLLQA---------------WKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK- 363 + L+ WK G TGFP IDA MRQL GW+H+ R A FL + Sbjct: 411 TGLVTGEYHVDSEEADIWFKRWKAGMTGFPWIDALMRQLKDEGWIHHLGRHAVACFLTRG 470 Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423 +DW G E F L+D + A N G WQW + + S YFR ++P G+++D +G Sbjct: 471 GCYIDWERGCEVFEEWLIDHEPACNVGNWQWLSCSAFFS-QYFRCYSPVAFGQKWDKKGE 529 Query: 424 FIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKA 466 FIR ++PEL N+ +YI+ P + P+ D KKA Sbjct: 530 FIRRYVPELKNMDAKYIYEP------------WKAPLTDQKKA 560 >gi|310791567|gb|EFQ27094.1| DNA photolyase [Glomerella graminicola M1.001] Length = 628 Score = 122 bits (305), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 95/284 (33%), Positives = 139/284 (48%), Gaps = 42/284 (14%) Query: 211 GEQNALHILRKFCKEKVYY--YVEQRDIPAI---QGTSQLSPYLSIGVLSPRQCWNRLKE 265 GE AL +L + +K Y + + + PA Q T+ +SP+L G LS R+ + R++ Sbjct: 241 GETRALGMLEEILADKKYTATFEKPKTSPAAFEPQSTTFMSPFLHFGALSVREFYWRVRA 300 Query: 266 EFVDLLIKPKSGA-FSWLNELIWREFY---RHLMAFYPSVCMGKP---FIPW--TEKI-- 314 VD K S S L +L++R+ Y + + + P FIPW K+ Sbjct: 301 -VVDAYGKGASKVPESLLGQLLFRDMYFAAHAALGYSFTQTANNPYCRFIPWHLPSKVDA 359 Query: 315 -------EWNKDS----HLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363 E++ DS + WK G TGFP IDA MRQL GW+H+ R A FL + Sbjct: 360 KTGLVTGEYHVDSTQADEWFRRWKYGVTGFPWIDALMRQLREEGWIHHLGRHSVACFLTR 419 Query: 364 D-LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQG 422 +DW G E F LLD + A N G WQW + T S YFR ++P G+++D QG Sbjct: 420 GGCYIDWERGCEVFEEWLLDHEPACNAGNWQWLSCTAFFSQ-YFRCYSPVSFGQKWDKQG 478 Query: 423 TFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKA 466 ++R W+PEL ++ +YI+ P + P+ D KKA Sbjct: 479 AYVRRWVPELKDLDAKYIYEP------------WKAPLPDQKKA 510 >gi|261378496|ref|ZP_05983069.1| deoxyribodopyrimidine photolyase [Neisseria cinerea ATCC 14685] gi|269145039|gb|EEZ71457.1| deoxyribodopyrimidine photolyase [Neisseria cinerea ATCC 14685] Length = 430 Score = 122 bits (305), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 134/453 (29%), Positives = 189/453 (41%), Gaps = 62/453 (13%) Query: 3 ATTAMSVH-LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFI 61 AT A +++ LVW R +LRI DN AL AA + +I ++I E H ++ F Sbjct: 7 ATVAHAMYTLVWFRQNLRIRDNAALCAAVAEG-SPIIGIWIEDTETGNLH-----RTAFY 60 Query: 62 YASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDK 121 S ++ + L+ GI S+ L + V + + E D Sbjct: 61 RQSAAELAQVLAGHGIPLYTAASSS------GLIRLAVGSSVRTVIADASCTFAEKLTDN 114 Query: 122 LLEKRLQHRVICKSF--DDSVL----LPPGSILNHALQMYKVYTPFRKALIQNLVQADLR 175 L L I +F D SV LPP + H + +RKA + D Sbjct: 115 ALWHELDKHSIRLTFVNDRSVFDQTDLPPDNGTAH-----TDFNRYRKAWL------DRF 163 Query: 176 SLPVPAIRLTGPVTPSNIPRFFDYPFQAI--DPMFPI---GEQNALHILRKFCKEKVYYY 230 S PA P P A D +FPI G A + F K+ +Y Sbjct: 164 SKHPPADSDIFATYRQPFPENLSAPQPAALSDGIFPIRHGGSSAAWKQWQTFLKQADFYD 223 Query: 231 VEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREF 290 V +D P+ + TS +S YL+ G LSPR L E + + SW + LI R+F Sbjct: 224 V-LKDFPSRKHTSLMSAYLNAGCLSPRL----LAREGIGYRLD------SWTDNLIRRDF 272 Query: 291 YRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMH 350 + L A + P +++ L W+QG TG PIIDA+MR L G +H Sbjct: 273 FLQL-ALQHADDASSDVNP--------ENTRYLALWQQGQTGIPIIDASMRCLYKTGGLH 323 Query: 351 NRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFN 410 LR + A FL L V GE +F QL D D A N G W+ A+S + P + Sbjct: 324 PVLRRLCADFLCHTLRVPRHEGEAWFARQLTDFDAAINQGNWRLASS--QHTYP-----D 376 Query: 411 PTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAP 443 + DP GTF+R +PEL ++P IH P Sbjct: 377 IAAAAHKTDPDGTFVRRHIPELAHLPAAVIHTP 409 >gi|254227310|ref|ZP_04920742.1| Deoxyribodipyrimidine photolyase [Vibrio sp. Ex25] gi|262396423|ref|YP_003288276.1| deoxyribodipyrimidine photolyase/cryptochrome family protein [Vibrio sp. Ex25] gi|151939922|gb|EDN58748.1| Deoxyribodipyrimidine photolyase [Vibrio sp. Ex25] gi|262340017|gb|ACY53811.1| deoxyribodipyrimidine photolyase/cryptochrome family protein [Vibrio sp. Ex25] Length = 493 Score = 121 bits (304), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 124/492 (25%), Positives = 214/492 (43%), Gaps = 42/492 (8%) Query: 8 SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67 ++++VWL+ DLR+TD++ L A +S + ++I P S R F++ SL Sbjct: 3 TINVVWLKRDLRLTDHQPLTQAL-SSKHPTVLLYIVEPLLLNNPHYSERHWRFVWQSLQD 61 Query: 68 VQKSLSQKGIVFQYHQCSN-FDDSIEWLDSYCLQQRVTKLFYNRQYEIN-EVRRDKLLEK 125 + ++L G H+ + F D++ S +Q ++ +F +++ +N RDK + Sbjct: 62 MNETLKAYG-----HRITVLFGDALACFQSIQMQYQINAVFSHQEIGLNCTFERDKQIAD 116 Query: 126 RLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185 L + I F+ G+++ A + + ++ DL++ L Sbjct: 117 WLHEQNIT-WFE----FEHGAVIRGAKDRQGWDKHWDLVMRSSISPLDLQT------NLL 165 Query: 186 GPVTPSNIPRFFDYP---FQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGT 242 + ++ F P M G Q A L F + Y P T Sbjct: 166 HSLDAESLGCAFSPPSSWLSKCKGMQTGGSQLAWKTLEDFFNRRGRDYYRSISSPTASRT 225 Query: 243 --SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFS----WLNELIWREFYRHLMA 296 ++LSPYL+ G +S R+ + L + + + + A S W I + + M Sbjct: 226 ACTRLSPYLAWGNISLREVYQYLLKHWQVVGFRRSLIALSSRLHWHCHFIQKFESEYDME 285 Query: 297 FYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMI 356 FY C+ + + ++ D L AWK GYTG P+IDA MR L+ G+++ R+R + Sbjct: 286 FY---CVNRAYESLIKQSS-TFDEEKLAAWKSGYTGIPLIDACMRCLHQTGYINFRMRAM 341 Query: 357 TASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAAS-TGNDSVPYFRIFNPTIQG 415 SFL + +DWR G + LD + + +Q A TG +++ RI+NP Q Sbjct: 342 LVSFLTHHMNMDWRTGVTHLAQLFLDFEPGIHYPQFQMQAGVTGTNTI---RIYNPVKQA 398 Query: 416 KRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLN------YPLPIVDHKKACHH 469 + DP G FI W+PEL VPT + P + + + Y PIVD A Sbjct: 399 QEHDPDGAFIYKWVPELQMVPTPLLFEPWTMTQMETVMYHLKPDSRYLAPIVDLNSAAKD 458 Query: 470 TLNQYYAAKKQS 481 + +A +K++ Sbjct: 459 ARERLWAWRKRA 470 >gi|289804363|ref|ZP_06534992.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp. enterica serovar Typhi str. AG3] Length = 94 Score = 121 bits (304), Expect = 2e-25, Method: Composition-based stats. Identities = 55/92 (59%), Positives = 67/92 (72%) Query: 388 NNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWL 447 NNGGWQWAASTG D+ PYFRIFNPT Q +RFD G FIR WLP L ++P + IH P W Sbjct: 1 NNGGWQWAASTGTDAAPYFRIFNPTTQRERFDRDGEFIRQWLPALRDIPGKAIHEPWRWA 60 Query: 448 DKNDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479 +K + L+YP PIV+HK+A TL+ Y AA+K Sbjct: 61 EKAGVVLDYPRPIVEHKQARIATLSAYEAARK 92 >gi|90415708|ref|ZP_01223642.1| deoxyribodipyrimidine photolyase [marine gamma proteobacterium HTCC2207] gi|90333031|gb|EAS48201.1| deoxyribodipyrimidine photolyase [marine gamma proteobacterium HTCC2207] Length = 447 Score = 121 bits (304), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 125/455 (27%), Positives = 203/455 (44%), Gaps = 37/455 (8%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIA----TPEQWRQHG-ISARQSHFIYA 63 V L W +DLR+ DN AL A D K+I ++ A T W+Q +S R+ F++ Sbjct: 4 VGLFWFNHDLRMDDNAALVLAAAEVD-KLICLYCADTTNTGPGWQQPAKLSPRRREFLFE 62 Query: 64 SLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLL 123 SL ++ LSQ G +E + V+ L+ E R L Sbjct: 63 SLQDLETQLSQYGQKL----VVRIQPPLEAIAQLITVHNVSHLYSANHVGSYENRIWNTL 118 Query: 124 EKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPA-I 182 KR +S + L P + ++ ++ FR+ LI+ + + S P+ A Sbjct: 119 RKRYPMLEFNQSHTHT-LFAPSQLPFTIDKLPASFSKFRR-LIEKMDLDSVISAPLDAPE 176 Query: 183 RLTGPVTPSNI---PRFFDYPFQAID----PMFPIGEQNA--LHILRKFCKEKVYYYVEQ 233 +L P + ++I P + D+ +D P G +A H+ F K+ Y + Sbjct: 177 KLPPPASVADIAWQPLWRDHYSSNLDGDDSPALFKGGASAGEEHLKGYFAKDLASSYKQT 236 Query: 234 RD-IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFY- 291 R+ + + +++ SP+L+ G LSPR+ +L+E + + EL+WRE++ Sbjct: 237 RNGLDGMDYSTKFSPWLANGTLSPRRIVQQLQE--YEARAGANDSTYWIFFELLWREYFQ 294 Query: 292 ----RHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIG 347 RH Y + + P T + W G T + II+A M+QLNT G Sbjct: 295 WYGHRHQQQLYAFTGIAQS-APTTSFY-----PERFKKWCAGNTPYAIINACMKQLNTTG 348 Query: 348 WMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFR 407 ++ NR R + AS V +L +DWR G Y QL+D D+ASN G WQ+ A G D + R Sbjct: 349 YLSNRGRQLVASCFVHELGLDWRHGAAYMEQQLVDYDVASNWGNWQYLAGVGADPRGH-R 407 Query: 408 IFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHA 442 F+ Q + +DP+ F++ W + P + A Sbjct: 408 RFDLKKQAQIYDPKNQFVQRWAGKQTLQPLDSVDA 442 >gi|312371404|gb|EFR19605.1| hypothetical protein AND_22153 [Anopheles darlingi] Length = 608 Score = 121 bits (303), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 135/523 (25%), Positives = 213/523 (40%), Gaps = 102/523 (19%) Query: 10 HLVWLRNDLRITDN----KALYAACHNSD--AKVIAVFIATPEQWRQHGISARQSHFIYA 63 +++W R+ LR+ DN +AL + C +S+ K+ VFI E + + F+ Sbjct: 66 NILWFRHGLRLHDNPSLLEALKSDCQSSNEPVKLFPVFIFDGESAGTRVVGYNRMKFLLE 125 Query: 64 SLLQVQKSLSQKG---IVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120 SL + + + G +VF+ DS L + + KL + + E RD Sbjct: 126 SLADLDRQFRELGGQLLVFR-------GDSETVLRRLFEELNIKKLCFEQDCEPIWRERD 178 Query: 121 KLLEKRLQHRVICKSFD--------------DSVLLPPGSILNHALQMYK-----VYTPF 161 + + K +C++ D + V+ G I QM+ + P Sbjct: 179 ERVTK------LCETMDVKCVENVSHTLWNPNEVIQTNGDIPPLTYQMFLHTVDIIGEPP 232 Query: 162 RKALIQNLVQADLRSLP--------------VPAIRLTGPVTPSNIPRFFDYPFQAIDPM 207 R + + +P +P G N D FQ Sbjct: 233 RPVGAPDFEFIEFGRIPAILASELKLYQQQHMPGPEEFGLTYDGNA----DIAFQK---- 284 Query: 208 FPIGEQNALHILRKFCKE-----KVYYYVEQRDIPAIQG-TSQLSPYLSIGVLSPRQCWN 261 + GE AL L K+ + YY+ + P I G + +S L G LS R + Sbjct: 285 WIGGETRALESLGARLKQEEEAFREGYYLPTQAKPEILGPATSMSAALRFGCLSVRMFYW 344 Query: 262 RLKEEFVDLLIKPKSGAFSW------LNELIWREFYRHLMAFYP--------SVCMGKPF 307 + + F + S F +LIWRE++ + P +C+ Sbjct: 345 CVHDLFAKV---QASSQFKCPIGQHITGQLIWREYFYTMSVRNPHYGEMDRNPICLN--- 398 Query: 308 IPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK-DLL 366 IPW E ++ DS L WK+G TGFP+IDAAMRQL GW+H+ LR ITA+FL + L Sbjct: 399 IPWYEPVD---DS--LVRWKEGRTGFPLIDAAMRQLLAEGWLHHILRNITATFLTRGGLW 453 Query: 367 VDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDS-VPYFRIFNPTIQGKRFDPQGTFI 425 + W G ++F+ LLD D + G W W +S+ + + + P R DP G ++ Sbjct: 454 ISWEAGLQHFLKYLLDADWSVCAGNWMWVSSSAFERLLDSSKCTCPVALAYRLDPTGDYV 513 Query: 426 RHWLPELNNVPTQYIHAPHSWLDKNDLSLN------YPLPIVD 462 + ++PEL N P +H P + L YP P+VD Sbjct: 514 KRYVPELVNYPAHLVHEPWKATKEEQLEYGCTIGQQYPAPMVD 556 >gi|313675112|ref|YP_004053108.1| deoxyribodipyrimidine photo-lyase family protein (cryptochrome) [Marivirga tractuosa DSM 4126] gi|312941810|gb|ADR21000.1| deoxyribodipyrimidine photo-lyase family protein (cryptochrome) [Marivirga tractuosa DSM 4126] Length = 495 Score = 121 bits (303), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 128/480 (26%), Positives = 211/480 (43%), Gaps = 52/480 (10%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 + LVWL+ DLR+ D+ L A N I + P S R +FI SL+++ Sbjct: 11 IALVWLKRDLRLEDHAPLQKAS-NIGLPTIIFYAWEPSLLASSDFSNRHWNFIAESLIEM 69 Query: 69 QKSLSQKGI-VFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEIN-EVRRDKLLEKR 126 Q LSQ + + Q H + I++L + + + LF + + + RD ++ Sbjct: 70 QSKLSQLEMSLIQVHT-----EVIDFLKAVQEKFDINYLFSHEETGLKITYERDNAVKFF 124 Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSL---PVPAIR 183 +++ I L G + K + F I + D++++ +P I Sbjct: 125 CENQNIEWQEFQQFGLQRGR--KNRQDWSKSWYEFMSKPIIKIDLNDIKTIHLNELPGII 182 Query: 184 LTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAI--QG 241 L NI Y + I G A L F ++ + Y + PA + Sbjct: 183 LINDSEELNI-----YKEKGIAQTG--GTAQAYKYLNSFLSDRHFGYNKNISKPAEARKS 235 Query: 242 TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLN----ELIW-----REFYR 292 S+LSPYL+ G +S R F ++ + G S LN L W ++F Sbjct: 236 CSRLSPYLAYGNISMRVV-------FQSMISAKEHGNKSALNNFGSRLRWHCHFIQKFEM 288 Query: 293 HLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNR 352 + ++ G + I N++ L +AW++G TGFP++DA MR + G+++ R Sbjct: 289 EDRYEFENINRG------YDSIRQNENDILYEAWEKGETGFPLVDACMRCVTETGYLNFR 342 Query: 353 LRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPT 412 +R + SFLV L W+ G + Q LD + + +Q A G + R++NP Sbjct: 343 MRAMLVSFLVYHLWQPWKRGAMHLGRQFLDFEPGIHYPQFQMQA--GVTGINTIRMYNPV 400 Query: 413 IQGKRFDPQGTFIRHWLPELNNVPTQYIHAP--HSWLDKN----DLSLNYPLPIVDHKKA 466 Q K DP G FI+ W+PEL NVP +IH P S++++ +L +YP PI+D + A Sbjct: 401 KQSKEHDPNGDFIKKWVPELQNVPIAFIHEPWKLSYIEQKSIHFELGKDYPSPIIDLEDA 460 >gi|326799096|ref|YP_004316915.1| cryptochrome, DASH family [Sphingobacterium sp. 21] gi|326549860|gb|ADZ78245.1| cryptochrome, DASH family [Sphingobacterium sp. 21] Length = 434 Score = 121 bits (303), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 112/437 (25%), Positives = 201/437 (45%), Gaps = 26/437 (5%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWR-----QHGISARQSHFIYASL 65 LVW RNDLR+ DN+ L+ A +D +V+ V++ P Q+ H ++ FI S+ Sbjct: 7 LVWFRNDLRVRDNEILWQALAKAD-RVVPVYVFDPRQFTPLKNGMHKTGVIRAKFILESV 65 Query: 66 LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125 ++ SL G S + + I L + + +V +++++R+ E L+E+ Sbjct: 66 QDLRLSLRSLGADLLV--VSGYPEEI--LPTLAERYQVKEVYHHREVAKEETHISTLVEE 121 Query: 126 RL-QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL 184 L + R+ + F L + + + FRK + + PV I + Sbjct: 122 ALWKKRLNLRHFIGHTLYHKEDLPFPIKDIPDAFATFRKKIERETTIRPSVETPV-KIEV 180 Query: 185 TGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGT-- 242 + S IP F A + I +Q+ ++ + D ++ G+ Sbjct: 181 PDNLEASEIPSLASLGFSA--GLIGIADQSPFKGGETEGLRRLETLLAGADTASLTGSFG 238 Query: 243 ----SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFY 298 + LSP++++G LS ++ +K+ + D + PK A + + L+WR+++R + + Sbjct: 239 SEEGTVLSPWIAMGCLSVHTVYHAVKK-YEDKSL-PKKQAAAIITGLLWRDYFRFMFKKH 296 Query: 299 PS-VCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMIT 357 + + + F E D+ L WK+G TG P +DAAM QLNTIG++ + RM+ Sbjct: 297 GNKFFLQQGFSNEIPAYELVGDA-LFDRWKRGETGDPFVDAAMHQLNTIGFISHTARMLV 355 Query: 358 ASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKR 417 A +LV +L + +G YF +L+D + ASN G W A G+ S I + Sbjct: 356 AHYLVSNLNISHLLGAAYFEDKLVDYNPASNYGNWAHIAGVGS-STKDNGIRDIKKLQNL 414 Query: 418 FDPQGTFIRHW-LPELN 433 D QG +++ W P+L+ Sbjct: 415 LDAQGEYVKRWGTPQLS 431 >gi|229520286|ref|ZP_04409712.1| deoxyribodipyrimidine photolyase single-strand-specific [Vibrio cholerae TM 11079-80] gi|229342652|gb|EEO07644.1| deoxyribodipyrimidine photolyase single-strand-specific [Vibrio cholerae TM 11079-80] Length = 461 Score = 121 bits (303), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 118/430 (27%), Positives = 183/430 (42%), Gaps = 27/430 (6%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKV-------IAVFIATPEQWRQHGISARQSHFI 61 + L W NDLR+ DN L A D + I F+A Q Q G + ++ + Sbjct: 5 IGLYWFTNDLRVNDNPLLEQASQQVDRLICLYCYPSITPFLARYAQQTQWGEAKKR--VL 62 Query: 62 YASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDK 121 +L + SLS G + + L Q +T ++ +E + Sbjct: 63 NQTLADLDHSLSTLGQKLWVTPLLPY----QALRHLLTQVEITDIYVEAMAGSDERQAIA 118 Query: 122 LLEKRLQHRVICKSFDDSVLLPPGSILNHALQ-MYKVYTPFRKALIQNLVQADLRSLPVP 180 + + I + S+L P L AL+ + +T FRK V+ S P+ Sbjct: 119 RIHQDFSSVHIHQQALHSLLSEPQ--LPFALEALPSTFTQFRKQ-----VETLSLSAPMG 171 Query: 181 AIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNAL-HILRKFCKEKVYYYVEQRD-IPA 238 R+ P+ D + F GEQ L H F Y E R+ + Sbjct: 172 YPRVLPPIEQGWQLPLLDIVAEPNHSAFIGGEQAGLTHCQNYFSSLLPSRYKETRNGLDG 231 Query: 239 IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFY 298 + +++ SP+L++G +SP+ + L+ + + + EL+WRE++ Y Sbjct: 232 MDYSTKFSPWLALGAVSPKTIYAMLQR--YEAVHGANDSTYWIFFELLWREYFYWYARRY 289 Query: 299 PSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITA 358 + I + + LQ WK G T FPI++A MRQLN G+M NR R + A Sbjct: 290 GAKLFRFSGIGEKKPLTSFYAQRFLQ-WKHGETPFPIVNACMRQLNQTGYMSNRGRQLVA 348 Query: 359 SFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRF 418 + LV +L +DWR G YF +QL+D D+ SN G WQ+ A G D R FN Q + Sbjct: 349 TCLVHELGLDWRYGAAYFETQLVDYDVGSNWGNWQYLAGVGADPRGS-RQFNLEKQAHTY 407 Query: 419 DPQGTFIRHW 428 DP+G F+ W Sbjct: 408 DPKGEFVAKW 417 >gi|218768929|ref|YP_002343441.1| deoxyribodopyrimidine photolyase [Neisseria meningitidis Z2491] gi|121052937|emb|CAM09291.1| deoxyribodopyrimidine photolyase [Neisseria meningitidis Z2491] gi|319411227|emb|CBY91634.1| deoxyribodopyrimidine photo-lyase (DNA photolyase; photoreactivating enzyme) [Neisseria meningitidis WUE 2594] Length = 433 Score = 121 bits (303), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 127/469 (27%), Positives = 192/469 (40%), Gaps = 91/469 (19%) Query: 1 MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHF 60 + A T + LVW R +LRI DN AL AA VI ++I E + R++ F Sbjct: 9 LYADTCAAHTLVWFRQNLRIRDNAALCAAVAEG-LPVIGIWIDDAET-----DNPRRAAF 62 Query: 61 IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120 S ++ + L+ +GI Y S + L ++ + + + + + D Sbjct: 63 YRQSAAELAQGLAGRGIPL-YTAASPAE-----LVRLAVRLNIRAVIADESHTFADKLAD 116 Query: 121 KLLEKRLQHRVICKSF--DDSV-----LLPPGSILNHALQMYK----------------V 157 L L I +F D +V L+P G + Y+ + Sbjct: 117 NALWHELNKHGIALTFVNDRAVFGKTDLIPDGGTAHTDFDRYREVWLDRFSKQPPAGPDL 176 Query: 158 YTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALH 217 + +R+ +NL S P PA G P N GE A Sbjct: 177 FAAYRQPFPENL------SAPPPAALSDGIFLPQNS-----------------GETAAWR 213 Query: 218 ILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSG 277 R+F ++ Y V +D P+ + TS + YLS G +SPR L E ++ + Sbjct: 214 QWRRFLEQADSYSV-LKDFPSRKHTSLMGAYLSAGCISPRL----LARESLERRLN---- 264 Query: 278 AFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHL-LQAWKQGYTGFPII 336 +W + +I R+F+ L + + + N + L L W+QG TG PII Sbjct: 265 --AWADNIIRRDFFLQLALQHTD----------DDPSDGNPEHTLRLTLWQQGRTGIPII 312 Query: 337 DAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAA 396 DAAMR L+ G +H LR ++A F L + R GE +F QL D D A N G W+ AA Sbjct: 313 DAAMRCLHKTGSLHPALRRLSADFFCHVLNLPRREGEIWFARQLTDFDAAINQGNWRLAA 372 Query: 397 STGNDSVPYFRIFNPTIQGK--RFDPQGTFIRHWLPELNNVPTQYIHAP 443 S R P I + DP GTF+R +PEL ++ +H P Sbjct: 373 S---------RHTCPDIAAAAHKTDPDGTFVRRHIPELAHLSADTVHTP 412 >gi|254283012|ref|ZP_04957980.1| DNA photolyase, putative [gamma proteobacterium NOR51-B] gi|219679215|gb|EED35564.1| DNA photolyase, putative [gamma proteobacterium NOR51-B] Length = 483 Score = 121 bits (303), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 126/486 (25%), Positives = 202/486 (41%), Gaps = 47/486 (9%) Query: 12 VWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQKS 71 +W + DLR+ DN AL AA +++ ++ +++ P R R HFI SL + Sbjct: 1 MWFKRDLRLEDNAALSAAI-DANKPLLLLYLVEPRLLRDPHYRRRHWHFIAQSLRDLSSR 59 Query: 72 LSQKGIVFQYHQCS------NFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125 LS + + ++ Y ++ ++ Y R ++E Sbjct: 60 LSPHDTLLHVLEADAEEVFPRLHRTLGIATIYSHEETGLEVTYARDRWVSE--------- 110 Query: 126 RLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQAD---LRSLPVPAI 182 +S D L P + + + K ++ R Q Q D L +LP Sbjct: 111 ------FAQSQDIDWLEYPTNGVQRGRRNRKGWS--RAWHQQMSAQPDSPRLNALPGRTP 162 Query: 183 RLTGPVTPSNIPRFFDYPFQAIDPMFPIG-EQNALHILRKFCKEKVYYYVEQRDIPAIQ- 240 L ++ R + + P F G E+ A L F + +V Y PA Sbjct: 163 ALPEALSGRVCRRLAQW--ETTHPQFQRGGERRAHETLNSFLEGRVAGYQRGISKPAASR 220 Query: 241 -GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFS----WLNELIWREFYRHLM 295 S+LSPY++ G LS RQ + L++ + + AF W I + M Sbjct: 221 NSCSRLSPYIAWGNLSIRQVYQALQQAREKGQWRRQLAAFESRLHWHCHFIQKFEMECRM 280 Query: 296 AFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRM 355 F P + + +IP + D L++AW +G TG+P+IDAAMR L G+++ R R Sbjct: 281 EFEP---INRGYIPHRTEA----DPELVRAWCEGRTGYPLIDAAMRCLIATGYINFRSRA 333 Query: 356 ITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQG 415 + SFL L DWR G + S LD + + Q A G + RI+NP Q Sbjct: 334 MLTSFLCHYLAQDWRQGAAWLGSLFLDFEPGIHYAQMQMQA--GVTGINTIRIYNPVKQS 391 Query: 416 KRFDPQGTFIRHWLPELNNVPTQYIHAP--HSWLDKNDLSLNYPLPIVDHKKACHHTLNQ 473 DP G FI W+PEL +P H P S +++ S +YP P+V + + ++ Sbjct: 392 MDHDPDGDFIAQWVPELAGLPAPLRHQPWEMSAMERMLYSCDYPDPVVSPESSYREARDR 451 Query: 474 YYAAKK 479 ++ KK Sbjct: 452 LWSLKK 457 >gi|325145228|gb|EGC67508.1| putative deoxyribodipyrimidine photolyase [Neisseria meningitidis M01-240013] Length = 433 Score = 121 bits (303), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 127/469 (27%), Positives = 192/469 (40%), Gaps = 91/469 (19%) Query: 1 MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHF 60 + A T + LVW R +LRI DN AL AA VI ++I E + R++ F Sbjct: 9 LYADTCAAHTLVWFRQNLRIRDNAALCAAVAEG-LPVIGIWIDDAET-----DNPRRAAF 62 Query: 61 IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120 S ++ + L+ +GI Y S + L ++ + + + + + D Sbjct: 63 YRQSAAELAQGLAGRGIPL-YTAASPAE-----LVRLAVRLNIRAVIADESHTFADKLAD 116 Query: 121 KLLEKRLQHRVICKSF--DDSV-----LLPPGSILNHALQMYK----------------V 157 L L I +F D +V L+P G + Y+ + Sbjct: 117 NALWHELNKHGIALTFVNDRAVFGKTDLIPDGGTAHTDFDRYREVWLDRFSKQPPAGPDL 176 Query: 158 YTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALH 217 + +R+ +NL S P PA G P N GE A Sbjct: 177 FAAYRQPFPENL------SAPPPAALSDGIFLPQNS-----------------GETAAWR 213 Query: 218 ILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSG 277 R+F ++ Y V +D P+ + TS + YLS G +SPR L E ++ + Sbjct: 214 QWRRFLEQADSYSV-LKDFPSRKHTSLMGAYLSAGCISPRL----LARESLERRLN---- 264 Query: 278 AFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHL-LQAWKQGYTGFPII 336 +W + +I R+F+ L + + + N + L L W+QG TG PII Sbjct: 265 --AWADNIIRRDFFLQLALQHAD----------DDPSDGNPEHTLRLTLWQQGRTGIPII 312 Query: 337 DAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAA 396 DAAMR L+ G +H LR ++A F L + R GE +F QL D D A N G W+ AA Sbjct: 313 DAAMRCLHKTGSLHPALRRLSADFFCHVLNLPRREGEIWFARQLTDFDAAINQGNWRLAA 372 Query: 397 STGNDSVPYFRIFNPTIQGK--RFDPQGTFIRHWLPELNNVPTQYIHAP 443 S R P I + DP GTF+R +PEL ++ +H P Sbjct: 373 S---------RHTCPDIAAAAHKTDPDGTFVRRHIPELAHLSADTVHTP 412 >gi|325131645|gb|EGC54351.1| putative deoxyribodipyrimidine photolyase [Neisseria meningitidis M6190] gi|325139007|gb|EGC61554.1| putative deoxyribodipyrimidine photolyase [Neisseria meningitidis ES14902] Length = 433 Score = 121 bits (303), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 127/469 (27%), Positives = 192/469 (40%), Gaps = 91/469 (19%) Query: 1 MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHF 60 + A T + LVW R +LRI DN AL AA VI ++I E + R++ F Sbjct: 9 LYADTCAAHTLVWFRQNLRIRDNAALCAAVAEG-LPVIGIWIDDAET-----DNPRRAAF 62 Query: 61 IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120 S ++ + L+ +GI Y S + L ++ + + + + + D Sbjct: 63 YRQSAAELAQGLAGRGIPL-YTAASPAE-----LVRLAVRLNIRAVIADESHTFADKLAD 116 Query: 121 KLLEKRLQHRVICKSF--DDSV-----LLPPGSILNHALQMYK----------------V 157 L L I +F D +V L+P G + Y+ + Sbjct: 117 NALWHELDKHGIALTFVNDRAVFGKTDLIPDGGTAHTDFDRYREVWLDRFSKQPPAGPDL 176 Query: 158 YTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALH 217 + +R+ +NL S P PA G P N GE A Sbjct: 177 FAAYRQPFPENL------SAPPPAALSDGIFLPQNS-----------------GETAAWR 213 Query: 218 ILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSG 277 R+F ++ Y V +D P+ + TS + YLS G +SPR L E ++ + Sbjct: 214 QWRRFLEQADSYSV-LKDFPSRKHTSLMGAYLSAGCISPRL----LARESLERRLN---- 264 Query: 278 AFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHL-LQAWKQGYTGFPII 336 +W + +I R+F+ L + + + N + L L W+QG TG PII Sbjct: 265 --AWADNIIRRDFFLQLALQHTD----------DDPSDGNPEHTLRLTLWQQGQTGIPII 312 Query: 337 DAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAA 396 DAAMR L+ G +H LR ++A F L + R GE +F QL D D A N G W+ AA Sbjct: 313 DAAMRCLHKTGSLHPALRRLSADFFCHVLNLPRREGEIWFARQLTDFDAAINQGNWRLAA 372 Query: 397 STGNDSVPYFRIFNPTIQGK--RFDPQGTFIRHWLPELNNVPTQYIHAP 443 S R P I + DP GTF+R +PEL ++ +H P Sbjct: 373 S---------RHTCPDIAAAAHKTDPDGTFVRRHIPELAHLSADTVHTP 412 >gi|153837520|ref|ZP_01990187.1| cryptochrome dash [Vibrio parahaemolyticus AQ3810] gi|149749116|gb|EDM59921.1| cryptochrome dash [Vibrio parahaemolyticus AQ3810] Length = 445 Score = 121 bits (303), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 125/461 (27%), Positives = 201/461 (43%), Gaps = 65/461 (14%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFI---ATP--EQWRQHGISAR-QSHFIY 62 + L W DLR+ DN L A D +++ ++ TP + Q R + FI Sbjct: 5 IGLYWFTFDLRLHDNLLLVNASSFLD-ELVCLYCRPSVTPFLHHFAQEATLGRARQKFID 63 Query: 63 ASLLQVQKSLSQKG-----IVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEV 117 ASL ++ +L Q G + +Q + +I++L VT L+ + +E Sbjct: 64 ASLCELNDALGQLGQRLWTLDLPPYQALKY--AIQYLG-------VTHLYADAMAGSDEQ 114 Query: 118 RRDKLLEKRLQHRVICKS-----FDDSVLLPPGSILNHALQMYKVYTPFRKAL----IQN 168 L+ H VI + FD+S L P ++ + + + +T FRK + I + Sbjct: 115 SILHKLQDEYPHLVIVQHAVRSLFDESKL--PFTLPD----LPETFTQFRKCVEGIDIAH 168 Query: 169 LVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNAL-HILRKFCKEKV 227 + A R P P + +P + F +F GE + L H R F Sbjct: 169 PIDAPSRLPPTP--------KDAQLPTLSSFYFDE-SALFSGGEWSGLAHCRRYFSSGLA 219 Query: 228 YYYVEQRD-IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELI 286 Y E R+ + + +++ SP+L++G +SPR + LK+ + + EL+ Sbjct: 220 SSYKETRNGLDGMAYSTKFSPWLALGCVSPRMIYAMLKQ--YEQTQGANDSTYWIYFELL 277 Query: 287 WREF-------YRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAA 339 WRE+ Y+ + + + P + +H Q WK G T +PI++A Sbjct: 278 WREYFYWYARCYQQRLFRFGGIRNQPPLTSFY--------AHRFQQWKNGTTPYPIVNAC 329 Query: 340 MRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTG 399 M QL+ G+M NR R + AS LV +L +DWR G YF +QL+D D+ SN G WQ+ A G Sbjct: 330 MHQLDHTGYMSNRGRQLVASCLVHELGLDWRYGAAYFETQLIDYDVGSNWGNWQYLAGVG 389 Query: 400 NDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYI 440 D R FN Q + +DP FI W + P + Sbjct: 390 ADPRGS-RQFNLEKQTQMYDPNHEFIVRWQGRDSRAPQDVV 429 >gi|308049735|ref|YP_003913301.1| deoxyribodipyrimidine photo-lyase family protein (cryptochrome) [Ferrimonas balearica DSM 9799] gi|307631925|gb|ADN76227.1| deoxyribodipyrimidine photo-lyase family protein (cryptochrome) [Ferrimonas balearica DSM 9799] Length = 484 Score = 121 bits (303), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 123/473 (26%), Positives = 205/473 (43%), Gaps = 50/473 (10%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 + +VWL+ DLR+ D+ L AC SDA ++ +++ P+ + R F++ SL + Sbjct: 6 LQVVWLKRDLRLQDHAPLAFAC-RSDAPLLLLYLFEPQLVNDPHYAPRHWRFVWQSLKDL 64 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEIN-EVRRDKLLEKRL 127 L+ G C D I+ L+ + +L + + ++ RD+ Sbjct: 65 NAGLAPHGGRVTCWFC----DPIDALNRLASDFTLVQLLSHEETGLSVTFERDQ------ 114 Query: 128 QHRVICKSFDDSVL----LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIR 183 + + DD+ + P G++ +RK + Q + D V Sbjct: 115 ---AVSRWCDDNGVPWHQWPNGAVQRGLNHRRGWDGHWRKTMAQPTAEPDWAR--VRWCH 169 Query: 184 LTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS 243 L P++ A + P GE A L F ++ Y P TS Sbjct: 170 LPDQTIPADW-------RSAAEGFQPGGESAARDCLDGFLAQRGRDYHRHISQPGNSRTS 222 Query: 244 --QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSV 301 +LSPYL+ G LS RQ RL+++ +P A + + L WR+ H + + S Sbjct: 223 CSRLSPYLAWGNLSVRQVIQRLRQDADTPDWRPARRALT--SRLKWRD---HFIQKFESE 277 Query: 302 CM--GKPFIPWTEKIEWNKDSH---LLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMI 356 C G+P +++D+ L AW+ G TG+P++DA+MR L+ G+++ R+R + Sbjct: 278 CAMEGRPINQAYRHFPYHQDADSDARLLAWQNGQTGYPLVDASMRALHQTGYLNFRMRAM 337 Query: 357 TASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQW-AASTGNDSVPYFRIFNPTIQG 415 SFL L++DWR G + LD + + +Q AA TG ++ RI+NP Q Sbjct: 338 LVSFLCHHLMIDWRRGVHHLARLFLDFEPGIHYPQFQMQAAVTGIHTI---RIYNPVKQS 394 Query: 416 KRFDPQGTFIRHWLPELNNVPTQYIHAP------HSWLDKNDLSLNYPLPIVD 462 D G FI+ + PEL +P H P L + + +YP PI+D Sbjct: 395 LEQDSDGQFIQAFCPELARLPVPVRHTPWQLTPMEHLLYEFEPGRDYPSPIID 447 >gi|262147205|ref|ZP_06028009.1| deoxyribodipyrimidine photolyase single-strand-specific [Vibrio cholerae INDRE 91/1] gi|262031362|gb|EEY49972.1| deoxyribodipyrimidine photolyase single-strand-specific [Vibrio cholerae INDRE 91/1] Length = 461 Score = 120 bits (302), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 119/430 (27%), Positives = 182/430 (42%), Gaps = 27/430 (6%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKV-------IAVFIATPEQWRQHGISARQSHFI 61 + L W NDLR+ DN L A D + I F+A Q Q S + F+ Sbjct: 5 IGLYWFTNDLRVNDNPLLEQASQQVDRLICLYCYPSITPFLARYAQ--QTQWSEAKKRFL 62 Query: 62 YASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDK 121 +L + SLS G + + L Q +T ++ + +E + Sbjct: 63 NQTLADLDHSLSTLGQKLWVTPLLPY----QALRHLLTQVEITDIYVDAVAGSDERQAIA 118 Query: 122 LLEKRLQHRVICKSFDDSVLLPPGSILNHALQ-MYKVYTPFRKALIQNLVQADLRSLPVP 180 + + I + S+L P L AL+ + +T FRK V+ S P+ Sbjct: 119 RIHQDFSSVHIHQQALHSLLSEPQ--LPFALEALPSTFTQFRKQ-----VETISLSAPMG 171 Query: 181 AIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNAL-HILRKFCKEKVYYYVEQRD-IPA 238 + P+ D + F GEQ L H F Y E R+ + Sbjct: 172 YPHVLPPIEQGWQLPLMDIVTEPNHSAFVGGEQAGLTHCQNYFSSLLPSRYKETRNGLDG 231 Query: 239 IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFY 298 + +++ SP+L++G +SP+ + L+ + + + EL+WRE++ Y Sbjct: 232 MDYSTKFSPWLALGAVSPKTIYAMLQR--YEAVHGANDSTYWIFFELLWREYFYWYARRY 289 Query: 299 PSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITA 358 + I + + LQ WK G T FPI++A MRQLN G+M NR R + A Sbjct: 290 GAKLFRFSGIGEKKPLTSFYAQRFLQ-WKHGETPFPIVNACMRQLNQTGYMSNRGRQLVA 348 Query: 359 SFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRF 418 S LV +L +DWR G YF +QL+D D+ SN G WQ+ A G D R FN Q + Sbjct: 349 SCLVHELGLDWRYGAAYFETQLVDYDVGSNWGNWQYLAGVGADPRGS-RQFNLEKQAHTY 407 Query: 419 DPQGTFIRHW 428 DP+G F+ W Sbjct: 408 DPKGEFVAKW 417 >gi|239994034|ref|ZP_04714558.1| deoxyribodipyrimidine photolyase, putative [Alteromonas macleodii ATCC 27126] Length = 543 Score = 120 bits (302), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 123/502 (24%), Positives = 213/502 (42%), Gaps = 56/502 (11%) Query: 5 TAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYAS 64 + SV ++W + DLR+ D++ LY A ++ ++ +F P + R FI S Sbjct: 6 SKQSVTVIWFKRDLRLRDHEPLYRAVEKNE-NILPLFCWEPSLIADPHMDMRHWQFIQQS 64 Query: 65 LLQVQKSLSQKGIVFQYHQCSNFDD--------SIEWLDSYCLQQRVTKLFYNRQYEI-N 115 + + L + H C D +I + SY Q+ + +NR + N Sbjct: 65 IDDINAQLPSGARLLTLH-CEVIDALELIAQHYAISTVRSY--QEIGLSVTHNRDISVSN 121 Query: 116 EVRRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKV---------YTPFRK--A 164 +++ K+ Q+ + + + + Y + +T Sbjct: 122 YLKKKKINHIESQYGAVMRGLPHREQWQQNWDRHFTTKTYDIDINSVNWVDWTQHNNINT 181 Query: 165 LIQNLVQADLRSLPVPAIRLTGPVTPSNIPR--FFDYPFQAIDPMFPIGEQNALHILRKF 222 +NL + L + + T SN R D + ++ M P GE+ A +L+ F Sbjct: 182 ACKNLDELGLFDCHITSQTGTHFSEKSNYYRQDVLD-KLKKLNKMQPGGERRAWQVLKDF 240 Query: 223 CKEKVYYYVEQRDIP--AIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFS 280 + YY + P A + S+LSPYL+ G LS +Q + ++ + + P S Sbjct: 241 FDARGQYYHQHISKPEYARRACSRLSPYLAWGNLSIKQVYQSVQHQKQTKKLLPNSDRKQ 300 Query: 281 W-------LNELIWREFY------RHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWK 327 W + L W + H + + P + G P+ + E + +L W Sbjct: 301 WSRALAALTSRLHWHCHFIQKFESEHSIEWRP-MNSGYENFPFIDGPEAERRFYL---WT 356 Query: 328 QGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLAS 387 G TG+P++DA MR L G+++ R+R + SFL L V W Y +Q LD + Sbjct: 357 MGLTGYPLVDACMRALKYTGYLNFRMRAMVTSFLCHHLNVHWLKAAHYLATQFLDFEPGI 416 Query: 388 NNGGWQWAAS-TGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPH-- 444 + Q AS TG +V R++NP Q + DP+G FI+ W+PEL +P++ +HAPH Sbjct: 417 HYPQIQMQASVTGIHTV---RLYNPATQSSKLDPEGVFIKKWVPELAKLPSEAVHAPHLL 473 Query: 445 ----SWLDKNDLSLNYPLPIVD 462 + + D+ +Y P+VD Sbjct: 474 PPLEAQMLDFDVERDYVEPLVD 495 >gi|224102189|ref|XP_002312581.1| predicted protein [Populus trichocarpa] gi|222852401|gb|EEE89948.1| predicted protein [Populus trichocarpa] Length = 573 Score = 120 bits (302), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 120/456 (26%), Positives = 201/456 (44%), Gaps = 73/456 (16%) Query: 6 AMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHF-IYAS 64 + S +VW R DLRI DN AL A+ D V VFI P++ + + R S + + S Sbjct: 2 SSSKTIVWFRRDLRIEDNPALAASAR--DGCVFPVFIWCPKEGQFY--PGRVSRWWLKQS 57 Query: 65 LLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYE-INEVRRDKLL 123 Q+ +SL V DSIE + + T + +N Y+ ++ VR + Sbjct: 58 FAQLGQSLEISCTV------GALLDSIETIGA-------TTVAFNHLYDPVSLVRDHNIK 104 Query: 124 EKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIR 183 EK ++ + +S++ +L P I + + + +R ++ P + Sbjct: 105 EKLVELGIFVQSYNGDLLYEPWEIYDERGYAFTTFEAYRDKCWHMQMEPVSHLPPWRLVP 164 Query: 184 LTGPVTPSNIPRFF--DYPFQAIDPMFPIGEQ----NALHILRKFCKEKVYYYVEQRDIP 237 G + ++ D ++ + + G NA + + +V + Sbjct: 165 AAGTIVMCSVEELGLEDEAEKSSNSLLGRGWSPGWGNAHLVGHAKSRLRVGSF------- 217 Query: 238 AIQGTSQLSPYLSIGVLSPRQC----------WNRLKEEFVDLLIKPKSGAFSWLNELIW 287 +S LSPYL G LS R+ W++ +E V K +L + Sbjct: 218 ----SSLLSPYLHFGELSVRKVFWCVQMKQLLWSK-EENSVG-----KESVTQFLRSIGL 267 Query: 288 REFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIG 347 RE R+L +P + + + WN + +AW+QG TG+P++D MR+L IG Sbjct: 268 RECSRYLCFNFP-FTHERLLLSNLKYFPWNANQVHFKAWRQGRTGYPLVDDGMRELWAIG 326 Query: 348 WMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFR 407 W+HNR+R I +SF VK LL+ WR G ++ +L GWQ+ + + D+ R Sbjct: 327 WIHNRIRAIVSSFAVKVLLLPWRWG----LNDIL---------GWQYISGSLPDAHELER 373 Query: 408 IFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAP 443 + NP IQG +FDP+G + L +PT++IH P Sbjct: 374 LDNPEIQGSKFDPEGEY-------LTRMPTEWIHHP 402 >gi|304389124|ref|ZP_07371166.1| deoxyribodopyrimidine photolyase [Neisseria meningitidis ATCC 13091] gi|304336923|gb|EFM03115.1| deoxyribodopyrimidine photolyase [Neisseria meningitidis ATCC 13091] Length = 433 Score = 120 bits (302), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 127/469 (27%), Positives = 192/469 (40%), Gaps = 91/469 (19%) Query: 1 MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHF 60 + A T + LVW R +LRI DN AL AA VI ++I E + R++ F Sbjct: 9 LYADTCAAHTLVWFRQNLRIRDNAALCAAVAEG-FPVIGIWIDDAET-----DNPRRAAF 62 Query: 61 IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120 S ++ + L+ +GI Y S + L ++ + + + + + D Sbjct: 63 YRQSAAELAQGLAGRGIPL-YTAASPAE-----LVRLAVRLNIRAVIADESHTFADKLAD 116 Query: 121 KLLEKRLQHRVICKSF--DDSV-----LLPPGSILNHALQMYK----------------V 157 L L I +F D +V L+P G + Y+ + Sbjct: 117 NALWHELDKHGIALTFVNDRAVFGKTDLIPDGGTAHTDFDRYREVWLDRFSKQPPAGPDL 176 Query: 158 YTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALH 217 + +R+ +NL S P PA G P N GE A Sbjct: 177 FAAYRQPFPENL------SAPPPAALSDGIFLPQNS-----------------GETAAWR 213 Query: 218 ILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSG 277 R+F ++ Y V +D P+ + TS + YLS G +SPR L E ++ + Sbjct: 214 QWRRFLEQADSYSV-LKDFPSRKHTSLMGAYLSAGCISPRL----LARESLERRLN---- 264 Query: 278 AFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHL-LQAWKQGYTGFPII 336 +W + +I R+F+ L + + + N + L L W+QG TG PII Sbjct: 265 --AWADNIIRRDFFLQLALQHTD----------DDPSDGNPEHTLRLTLWQQGRTGIPII 312 Query: 337 DAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAA 396 DAAMR L+ G +H LR ++A F L + R GE +F QL D D A N G W+ AA Sbjct: 313 DAAMRCLHKTGSLHPALRRLSADFFCHVLNLPRREGEIWFARQLTDFDAAINQGNWRLAA 372 Query: 397 STGNDSVPYFRIFNPTIQGK--RFDPQGTFIRHWLPELNNVPTQYIHAP 443 S R P I + DP GTF+R +PEL ++ +H P Sbjct: 373 S---------RHTCPDIAAAAHKTDPDGTFVRRHIPELAHLSADTVHTP 412 >gi|254281574|ref|ZP_04956542.1| deoxyribodipyrimidine photo-lyase [gamma proteobacterium NOR51-B] gi|219677777|gb|EED34126.1| deoxyribodipyrimidine photo-lyase [gamma proteobacterium NOR51-B] Length = 439 Score = 120 bits (301), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 121/435 (27%), Positives = 181/435 (41%), Gaps = 43/435 (9%) Query: 10 HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69 HL W + DLR+ DN AL + + + T G+ ++ F+ SL ++ Sbjct: 9 HLHWFQRDLRLADNPALSSHVAADTLLCVYLMPKTGPWCNVTGMGPQRDRFLRESLQALR 68 Query: 70 KSLSQKG---IVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 L++ G +V + D + D + +Y R L +R Sbjct: 69 DELNRLGQDLLVLEGSPELVLPDLVSRFDITEVSACTAPGYYER-----------LTYER 117 Query: 127 LQHR--VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL 184 LQ R V + + L + +TPFRK + L P A + Sbjct: 118 LQRRLGVPFELHRGNTLFTEDQLPTGLADFPATFTPFRKQV------EPLTITPPAAEPV 171 Query: 185 TGPVTPSNIPRFFDY--PFQAI-DPMFPI--GEQNALHILRKFC--KEKVYYYVEQRD-I 236 T P P+ FD P QA+ P PI G L +R+F + ++ Y E R+ + Sbjct: 172 TLPPPPAAQ---FDAIPPAQALPSPALPIPGGRAAGLRRVRQFIFDERRIVSYKETRNCL 228 Query: 237 PAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLN-ELIWREFY--RH 293 + G+S LSP+L+ G LS R+ + + + L + WL EL+WREF+ R Sbjct: 229 DGLDGSSSLSPWLANGNLSAREVAHEIFRFEREQLANEST---YWLFFELLWREFFQWRA 285 Query: 294 LMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRL 353 ++ + +G D W G T FP+++A M QL GWM NR Sbjct: 286 VIDDHGLFHIGGV---QKRGRRCCFDPRAFARWSAGDTDFPLVNALMHQLTDTGWMSNRG 342 Query: 354 RMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTI 413 R I AS L+ +L DWR G +F L+D D+ SN G WQ+ A G D R FN Sbjct: 343 RQIVASCLINELGQDWRFGAAFFEKHLIDYDVGSNYGNWQYIAGVGADPR-GGRHFNLDK 401 Query: 414 QGKRFDPQGTFIRHW 428 Q + DP+ F W Sbjct: 402 QAAQHDPENIFTTKW 416 >gi|194099599|ref|YP_002002730.1| putative deoxyribodopyrimidine photolyase [Neisseria gonorrhoeae NCCP11945] gi|240014955|ref|ZP_04721868.1| putative deoxyribodopyrimidine photolyase [Neisseria gonorrhoeae DGI18] gi|240017403|ref|ZP_04723943.1| putative deoxyribodopyrimidine photolyase [Neisseria gonorrhoeae FA6140] gi|240118782|ref|ZP_04732844.1| putative deoxyribodopyrimidine photolyase [Neisseria gonorrhoeae PID1] gi|240122024|ref|ZP_04734986.1| putative deoxyribodopyrimidine photolyase [Neisseria gonorrhoeae PID24-1] gi|254494581|ref|ZP_05107752.1| deoxyribodopyrimidine photolyase [Neisseria gonorrhoeae 1291] gi|268604493|ref|ZP_06138660.1| deoxyribodopyrimidine photolyase [Neisseria gonorrhoeae PID1] gi|193934889|gb|ACF30713.1| putative deoxyribodopyrimidine photolyase [Neisseria gonorrhoeae NCCP11945] gi|226513621|gb|EEH62966.1| deoxyribodopyrimidine photolyase [Neisseria gonorrhoeae 1291] gi|268588624|gb|EEZ53300.1| deoxyribodopyrimidine photolyase [Neisseria gonorrhoeae PID1] Length = 432 Score = 120 bits (301), Expect = 5e-25, Method: Compositional matrix adjust. Identities = 126/469 (26%), Positives = 190/469 (40%), Gaps = 91/469 (19%) Query: 1 MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHF 60 + A T + LVW R +LRI DN AL AA + VI ++I E + R++ F Sbjct: 9 LYADTRAAHTLVWFRQNLRIRDNAALCAAVAEG-SPVIGIWIDDAET-----DNPRRAAF 62 Query: 61 IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120 S ++ + L+++GI S L ++ + + + + + D Sbjct: 63 YRQSAAELAQGLARRGIPLYTAA------SPAGLVRLAVRLNIRAVIADESHTFADKLAD 116 Query: 121 KLLEKRLQHRVICKSF--DDSV-----LLPPGSILNHALQMYK----------------V 157 L L I +F D SV L P + Y+ + Sbjct: 117 NALWHELDKHGIALTFVNDRSVFGKTDLTPDNGTAHTDFNRYREVWLDRFSKQPPAGSDL 176 Query: 158 YTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALH 217 + +R+ +NL P PA G P N GE A Sbjct: 177 FAAYRQPFPENL------PAPPPAALSDGIFLPQNG-----------------GETAAWR 213 Query: 218 ILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSG 277 R+F ++ Y V +D P+ + TS + YLS+G +SPR L E ++ + Sbjct: 214 QWRRFLEQAASYSV-LKDFPSRKNTSLMGAYLSVGCISPRL----LARESLERRLN---- 264 Query: 278 AFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHL-LQAWKQGYTGFPII 336 +W + +I R+F+ L + + + N + L L W+QG TG PII Sbjct: 265 --AWADNIIRRDFFLQLALQHAD----------DDPSDGNPEHTLRLTLWQQGRTGIPII 312 Query: 337 DAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAA 396 DAAMR L+ G +H LR ++A F L + R GE +F QL D D A N G W+ AA Sbjct: 313 DAAMRCLHKTGSLHPALRRLSADFFCHVLNLPRREGEIWFARQLTDFDAAINQGNWRLAA 372 Query: 397 STGNDSVPYFRIFNPTIQGK--RFDPQGTFIRHWLPELNNVPTQYIHAP 443 S R P I R DP GTFI+ +PEL ++ +H P Sbjct: 373 S---------RHTCPDIAAASYRTDPDGTFIKRHIPELAHLSADTVHTP 412 >gi|59802028|ref|YP_208740.1| putative deoxyribodopyrimidine photolyase [Neisseria gonorrhoeae FA 1090] gi|239999799|ref|ZP_04719723.1| putative deoxyribodopyrimidine photolyase [Neisseria gonorrhoeae 35/02] gi|240081545|ref|ZP_04726088.1| putative deoxyribodopyrimidine photolyase [Neisseria gonorrhoeae FA19] gi|240124322|ref|ZP_04737278.1| putative deoxyribodopyrimidine photolyase [Neisseria gonorrhoeae PID332] gi|240126533|ref|ZP_04739419.1| putative deoxyribodopyrimidine photolyase [Neisseria gonorrhoeae SK-92-679] gi|240128995|ref|ZP_04741656.1| putative deoxyribodopyrimidine photolyase [Neisseria gonorrhoeae SK-93-1035] gi|268595609|ref|ZP_06129776.1| deoxyribodopyrimidine photolyase [Neisseria gonorrhoeae 35/02] gi|268597641|ref|ZP_06131808.1| deoxyribodopyrimidine photolyase [Neisseria gonorrhoeae FA19] gi|268682948|ref|ZP_06149810.1| deoxyribodopyrimidine photolyase [Neisseria gonorrhoeae PID332] gi|268685113|ref|ZP_06151975.1| deoxyribodopyrimidine photolyase [Neisseria gonorrhoeae SK-92-679] gi|268687375|ref|ZP_06154237.1| deoxyribodopyrimidine photolyase [Neisseria gonorrhoeae SK-93-1035] gi|293398069|ref|ZP_06642274.1| deoxyribodipyrimidine photo-lyase [Neisseria gonorrhoeae F62] gi|59718923|gb|AAW90328.1| putative deoxyribodopyrimidine photolyase [Neisseria gonorrhoeae FA 1090] gi|268548998|gb|EEZ44416.1| deoxyribodopyrimidine photolyase [Neisseria gonorrhoeae 35/02] gi|268551429|gb|EEZ46448.1| deoxyribodopyrimidine photolyase [Neisseria gonorrhoeae FA19] gi|268623232|gb|EEZ55632.1| deoxyribodopyrimidine photolyase [Neisseria gonorrhoeae PID332] gi|268625397|gb|EEZ57797.1| deoxyribodopyrimidine photolyase [Neisseria gonorrhoeae SK-92-679] gi|268627659|gb|EEZ60059.1| deoxyribodopyrimidine photolyase [Neisseria gonorrhoeae SK-93-1035] gi|291611332|gb|EFF40402.1| deoxyribodipyrimidine photo-lyase [Neisseria gonorrhoeae F62] gi|317165088|gb|ADV08629.1| putative deoxyribodopyrimidine photolyase [Neisseria gonorrhoeae TCDC-NG08107] Length = 432 Score = 120 bits (301), Expect = 5e-25, Method: Compositional matrix adjust. Identities = 126/469 (26%), Positives = 190/469 (40%), Gaps = 91/469 (19%) Query: 1 MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHF 60 + A T + LVW R +LRI DN AL AA + VI ++I E + R++ F Sbjct: 9 LYADTRAAHTLVWFRQNLRIRDNAALCAAVAEG-SPVIGIWIDDAET-----DNPRRAAF 62 Query: 61 IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120 S ++ + L+++GI S L ++ + + + + + D Sbjct: 63 YRQSAAELAQGLARRGIPLYTAA------SPAGLVRLAVRLNIRAVIADESHTFADKLAD 116 Query: 121 KLLEKRLQHRVICKSF--DDSV-----LLPPGSILNHALQMYK----------------V 157 L L I +F D SV L P + Y+ + Sbjct: 117 NALWHELDKHGIALTFVNDRSVFGKTDLTPDNGTAHTDFNRYREVWLDRFSKQPPAGSDL 176 Query: 158 YTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALH 217 + +R+ +NL P PA G P N GE A Sbjct: 177 FAAYRQPFPENL------PAPPPAALSDGIFLPQNG-----------------GETAAWR 213 Query: 218 ILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSG 277 R+F ++ Y V +D P+ + TS + YLS+G +SPR L E ++ + Sbjct: 214 QWRRFLEQAASYSV-LKDFPSRKNTSLMGAYLSVGCISPRL----LARESLERRLN---- 264 Query: 278 AFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHL-LQAWKQGYTGFPII 336 +W + +I R+F+ L + + + N + L L W+QG TG PII Sbjct: 265 --AWADNIIRRDFFLQLALQHAD----------DDPSDGNPEHTLRLTLWQQGRTGIPII 312 Query: 337 DAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAA 396 DAAMR L+ G +H LR ++A F L + R GE +F QL D D A N G W+ AA Sbjct: 313 DAAMRCLHKTGSLHPALRRLSADFFCHVLNLPRREGEIWFARQLTDFDAAINQGNWRLAA 372 Query: 397 STGNDSVPYFRIFNPTIQGK--RFDPQGTFIRHWLPELNNVPTQYIHAP 443 S R P I R DP GTFI+ +PEL ++ +H P Sbjct: 373 S---------RHTCPDIAAASYRTDPDGTFIKRHIPELAHLSADTVHTP 412 >gi|329910859|ref|ZP_08275394.1| Deoxyribodipyrimidine photolyase [Oxalobacteraceae bacterium IMCC9480] gi|327546064|gb|EGF31136.1| Deoxyribodipyrimidine photolyase [Oxalobacteraceae bacterium IMCC9480] Length = 498 Score = 120 bits (301), Expect = 5e-25, Method: Compositional matrix adjust. Identities = 124/495 (25%), Positives = 204/495 (41%), Gaps = 49/495 (9%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 + +VW + DLRI D+ L A + V+A+F+ PE SA FI L + Sbjct: 1 MEIVWFKRDLRIRDHAPLADAV--AAGPVLALFLHEPEIILAPDFSAAHGAFIRECLDSL 58 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEV--RRDKLLEKR 126 +L ++G + D +E + QQ+ + Q N +RD+ + Sbjct: 59 HAALQERGGEL-VEMTGSAPDMLEQI----WQQQPFATLRSHQETGNRASYQRDEQVAAW 113 Query: 127 LQHRVIC--KSFDDSVLLPPGSILNH----ALQMYKVYTPFRKALIQNLVQADLRSLPVP 180 + R + +S + V+ + L Y P + +++V + L + Sbjct: 114 CRKRGVTWRQSPQNGVIRGQEARAKRDWIAELDDYSSSEPVKPP--RHIVPSKLPPM--- 168 Query: 181 AIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKV--YYYVEQRDIPA 238 LTGPV P D P + G A+ +L F + ++ Y Y I A Sbjct: 169 ---LTGPVAPLQAA-GHDKPGR-----MKGGRAEAIGLLTAFIRTRILRYPYAISSPITA 219 Query: 239 IQGTSQLSPYLSIGVLSPRQ---CWNRLKEEFVDLLIKPK------SGAFSWLNELIWRE 289 G S+LSP+L+ GV++ R+ NR + + +L + S + + L WR Sbjct: 220 EHGCSRLSPFLAYGVITMREIVLAMNR-RVDSAELAVNEAERERLISALRFFADRLRWRA 278 Query: 290 FYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWM 349 Y M P + E D W++G TG+P++DAAM+ L+ GW+ Sbjct: 279 GYFQNMESMPRLEFDNIHSGMNGLREGEFDPVFFARWREGETGYPMVDAAMKMLHHTGWL 338 Query: 350 HNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIF 409 + R+R + SF V +L + WR + + +D + A + Q A T + Sbjct: 339 NMRMRGMLLSFAVNELWLHWREPALFLAREFVDYEPAIHYNQMQIHAGTAGAG--SMLAY 396 Query: 410 NPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND------LSLNYPLPIVDH 463 NP Q + DP+G F+R WLP L VP YI P + + +YP P+VDH Sbjct: 397 NPVKQAQELDPKGIFVRRWLPALRAVPDAYIFTPWTMPPAVQTACGVAIGSDYPAPLVDH 456 Query: 464 KKACHHTLNQYYAAK 478 A ++ A+ Sbjct: 457 LDAARQARSRVADAQ 471 >gi|116075315|ref|ZP_01472575.1| Deoxyribodipyrimidine photolyase [Synechococcus sp. RS9916] gi|116067512|gb|EAU73266.1| Deoxyribodipyrimidine photolyase [Synechococcus sp. RS9916] Length = 507 Score = 120 bits (301), Expect = 5e-25, Method: Compositional matrix adjust. Identities = 85/283 (30%), Positives = 128/283 (45%), Gaps = 27/283 (9%) Query: 211 GEQNALHILRKFCKEKVYYYVEQRDIP--AIQGTSQLSPYLSIGVLSPRQCWNRLKEEFV 268 G ++ L L F +V Y P A +G S+LSPYL+ G LS ++E Sbjct: 196 GRESGLQELSDFLTSRVQRYARSISSPVVAFRGCSRLSPYLTWGCLS-------MREVVQ 248 Query: 269 DLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQ 328 G S+ + L W + + P++ F P+ I DS QAWK+ Sbjct: 249 ASRTLTGRGVSSFGSRLHWHCHFIQKLESEPAIEF-HDFHPFMRGIR-PMDSERFQAWKE 306 Query: 329 GYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASN 388 G TG P +DA MR L GW++ R+R + SF L + WR + Q +D Sbjct: 307 GRTGVPFVDACMRALLAHGWINFRMRAMLMSFASYHLWLPWRESGLHLARQFVD-----Y 361 Query: 389 NGGWQWA---ASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHS 445 G W+ +G+ ++ RI+NP QG+ DP G FIR W PEL ++P Y+H P Sbjct: 362 EPGIHWSQCQMQSGSTAINTIRIYNPVKQGQDHDPNGRFIREWCPELASLPNVYLHEPWK 421 Query: 446 WLDKN-------DLSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481 LD L ++YP P+VD A ++ + ++ + Sbjct: 422 -LDARRAEQLGCRLGVDYPAPVVDPTAAAREAKDRIWEIRRAA 463 Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 27/67 (40%), Positives = 37/67 (55%), Gaps = 2/67 (2%) Query: 10 HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69 LVW + DLR DN+ L AC + V+ ++I PE WRQ SARQ F SL ++ Sbjct: 9 QLVWFKRDLRTVDNRPLLEAC--AHGPVLPLYIVEPEYWRQPDASARQWEFCRESLEHLR 66 Query: 70 KSLSQKG 76 + L+ G Sbjct: 67 RELAALG 73 >gi|269965489|ref|ZP_06179607.1| deoxyribodipyrimidine photolyase [Vibrio alginolyticus 40B] gi|269829852|gb|EEZ84083.1| deoxyribodipyrimidine photolyase [Vibrio alginolyticus 40B] Length = 450 Score = 120 bits (300), Expect = 6e-25, Method: Compositional matrix adjust. Identities = 126/443 (28%), Positives = 199/443 (44%), Gaps = 53/443 (11%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFI---ATP--EQWRQHGISARQS-HFIY 62 + L W NDLR+ DN L +A D ++I ++ TP + Q R F+ Sbjct: 5 IGLYWFTNDLRLHDNPLLKSASVEMD-ELICLYCYPSMTPYLHHFAQEASFGRAKLQFLD 63 Query: 63 ASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRR--D 120 +SL ++ +SL+ G + + D +I+ Y + + Y + ++ ++ D Sbjct: 64 SSLSELNQSLNHLGQRLWAVELTP-DQAIK----YAVNRFGVTHIYADAFPGSDEQQALD 118 Query: 121 KLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVP 180 ++ E ++ ++ LL + + +T FRK V+ S P Sbjct: 119 RVAEGASHVKIKQQAI--RTLLREEQLPFDLSNLPTTFTQFRKQ-----VEGLDISRPHE 171 Query: 181 AIRLTGPVTPS-NIPRFFDYPFQAIDPMFPIGEQNAL-HILRKFCKEKVYYYVEQRD-IP 237 +IR P+ N+P Y F A F GE L H + F Y + R+ + Sbjct: 172 SIRSLPPIPLGVNLPSVTAYYFDA-KAAFHGGESRGLEHCRQYFASTLASEYKQTRNGLD 230 Query: 238 AIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFS---WLN-ELIWREFY-- 291 + +++ SP+L+ G +SP+ + LK + ++GA W+ EL+WRE++ Sbjct: 231 GMDYSTKFSPWLAHGCVSPKTIYAMLKR------YEAENGANDSTYWIYFELLWREYFYW 284 Query: 292 ------RHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNT 345 R L F + P + +H Q WK+G T FPI++A M QLN Sbjct: 285 YARRHKRQLFRF-GGIQNRAPLTSFY--------AHRFQQWKKGETPFPIVNACMHQLNE 335 Query: 346 IGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPY 405 G+M NR R + AS LV +L +DWR G YF SQL+D D+ASN G WQ+ A G D Sbjct: 336 TGYMSNRGRQLVASCLVHELGLDWRYGAAYFESQLVDYDVASNWGNWQYLAGVGADPRGS 395 Query: 406 FRIFNPTIQGKRFDPQGTFIRHW 428 R FN Q + +DP FI W Sbjct: 396 -RQFNLEKQTEMYDPHMEFIDRW 417 >gi|324103935|gb|ADY17887.1| cryptochrome [Spodoptera exigua] gi|324103937|gb|ADY17888.1| cryptochrome [Spodoptera exigua] Length = 548 Score = 120 bits (300), Expect = 6e-25, Method: Compositional matrix adjust. Identities = 80/246 (32%), Positives = 118/246 (47%), Gaps = 25/246 (10%) Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDL---LIKPKSGAFSWLNELIWREFYRHLMAFYPSV 301 LSP L G LS R + +++ F + + S + +LIWRE++ + P+ Sbjct: 258 LSPALRFGCLSVRSFYWSVQDLFRQVHQGRLTSNSASHFITGQLIWREYFYTMSVNNPNY 317 Query: 302 --CMGKPF---IPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMI 356 G P IPW LQ W +G TGFP +DAAMRQL T GW+H+ R Sbjct: 318 GQMAGNPICLDIPWK-----TPSGDELQRWMEGRTGFPFVDAAMRQLRTEGWLHHAARNT 372 Query: 357 TASFLVKDLL-VDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDS-VPYFRIFNPTIQ 414 ASFL + L + W G +F+ LLD D + G W W +S+ ++ + P Sbjct: 373 VASFLTRGTLWLSWEHGLNHFLKYLLDADWSVCAGNWMWVSSSAFEALLDSGECACPVRL 432 Query: 415 GKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND--------LSLNYPLPIVDHKKA 466 G+R DP G ++R ++PEL +P +YI+ P W D + +YP P+V+H A Sbjct: 433 GQRLDPSGEYVRRYVPELARMPVEYIYEP--WKAPIDVQERASCIIGKDYPDPVVNHLVA 490 Query: 467 CHHTLN 472 N Sbjct: 491 AQRNRN 496 >gi|149926570|ref|ZP_01914831.1| deoxyribodipyrimidine photolyase family protein [Limnobacter sp. MED105] gi|149824933|gb|EDM84147.1| deoxyribodipyrimidine photolyase family protein [Limnobacter sp. MED105] Length = 559 Score = 120 bits (300), Expect = 7e-25, Method: Compositional matrix adjust. Identities = 126/505 (24%), Positives = 212/505 (41%), Gaps = 55/505 (10%) Query: 7 MSVHLVWLRNDLRITDNKALYAA---CHNSDAKVIAVFIATPEQWRQHGISARQSHFIYA 63 M +HLVWL+ DLR++D+ +AA S+ V+A++ P+ RQ + + F Sbjct: 1 MHLHLVWLKKDLRLSDHAPWHAATKAAKESNGCVVALYCLEPKLIRQPDSAPQHFEFARE 60 Query: 64 SLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEIN--EVRRDK 121 SL ++ + L ++ + +N +++ + C Q + Y+ Q N RDK Sbjct: 61 SLQELAEQLPEQVPLLLAK--ANAPVALQTMALCCQQISI----YSHQETGNWASFVRDK 114 Query: 122 LLEKRLQ-HRVICKSFDDSVLLPP-------GSILNHALQMYKVYTPFRKALIQNL---- 169 ++ + H + F ++ ++ G + ++ + P L Q Sbjct: 115 EVKAWCESHSIAWLEFQNNAVVRKLKNRDEWGKLWLDTMRKPVLPVPDFSELPQATWFDF 174 Query: 170 ---VQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPI--GEQNALHILRKFCK 224 Q L +P ++L + P YP D G Q A L +F Sbjct: 175 PQNFQQQLEVNGLPCVQLNRSLWPQWAQYVHFYPKHLTDKTLRQRGGRQQAQRCLSEFLS 234 Query: 225 EKVYYYVEQRDIP--AIQGTSQLSPYLSIGVLSPRQCWNRL---KEEFVDLLIKPKSGAF 279 E+ Y + P A S+LSPYL+ GV+S R+ L +++ + + PK+ Sbjct: 235 ERGMNYRFEMSSPLSAESACSRLSPYLAFGVISIREMLEALSQARQQLTESSLLPKAQT- 293 Query: 280 SWLNELIWREFYRHLMAFYPSVCMGKPFIPWTE------------KIEWNKDSHLLQAWK 327 W L E H + +P + + ++ ++ L AW Sbjct: 294 QWKQSLKSFESRLHWHCHFIQKLESEPELEFRSAHRGLNAMRNFAELSPEENQKAL-AWI 352 Query: 328 QGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLAS 387 +G TGFP++DA MR L GW++ R+R + +F L +DWR + LD + Sbjct: 353 EGRTGFPMVDACMRMLRATGWVNFRMRAMLVAFASYQLWLDWRHTAPMLAREFLDYEPGI 412 Query: 388 NNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAP--HS 445 + Q+ +G + RI+NP Q K DPQG FIR W+PEL N+P +I P Sbjct: 413 HYP--QFQMQSGVTGINTLRIYNPVKQAKDHDPQGVFIRRWIPELKNIPDPWIGEPWNTP 470 Query: 446 WLDKNDLSL----NYPLPIVDHKKA 466 L + + +YP P+VD A Sbjct: 471 QLIQQECGCIVGEDYPWPVVDPDTA 495 >gi|121635578|ref|YP_975823.1| deoxyribodopyrimidine photolyase [Neisseria meningitidis FAM18] gi|161870775|ref|YP_001599948.1| deoxyribodopyrimidine photolyase [Neisseria meningitidis 053442] gi|120867284|emb|CAM11055.1| deoxyribodopyrimidine photolyase [Neisseria meningitidis FAM18] gi|161596328|gb|ABX73988.1| deoxyribodopyrimidine photolyase [Neisseria meningitidis 053442] gi|325128961|gb|EGC51813.1| putative deoxyribodipyrimidine photolyase [Neisseria meningitidis N1568] gi|325199013|gb|ADY94469.1| putative deoxyribodipyrimidine photolyase [Neisseria meningitidis G2136] Length = 433 Score = 120 bits (300), Expect = 7e-25, Method: Compositional matrix adjust. Identities = 128/469 (27%), Positives = 191/469 (40%), Gaps = 91/469 (19%) Query: 1 MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHF 60 + A T + LVW R +LRI DN AL AA VI ++I E + R++ F Sbjct: 9 LYADTCAAHTLVWFRQNLRIRDNAALCAAVAEG-LPVIGIWIDDAET-----DNPRRAAF 62 Query: 61 IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120 S ++ + L+ +GI Y S + L ++ + + + + + D Sbjct: 63 YRQSAAELAQGLAGRGIPL-YTAASPAE-----LVRLAVRLNIRAVIADESHTFADKLAD 116 Query: 121 KLLEKRLQHRVICKSF--DDSV-----LLPPGSILNHALQMYK----------------V 157 L L I +F D +V L+P G + Y+ + Sbjct: 117 NALWHELDKHGIALTFVNDRAVFGKTDLIPDGGTAHTDFDRYREVWLDRFSKQPPAGPDL 176 Query: 158 YTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALH 217 + +R+ +NL S P PA G P N GE A Sbjct: 177 FAAYRQPFPENL------SAPPPAALSDGIFLPQNS-----------------GETAAWR 213 Query: 218 ILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSG 277 R+F ++ Y V +D P+ + TS + YLS G +SPR L E ++ + Sbjct: 214 QWRRFLEQADSYSV-LKDFPSRKHTSLMGAYLSAGCISPRL----LARESLERRLN---- 264 Query: 278 AFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHL-LQAWKQGYTGFPII 336 +W + +I R+F+ L + + + N + L L W+QG TG PII Sbjct: 265 --AWADNIIRRDFFLQLALQHTD----------DDPSDGNPEHTLRLTLWQQGQTGIPII 312 Query: 337 DAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAA 396 DAAMR L+ G +H LR ++A F L + R GE +F QL D D A N G W AA Sbjct: 313 DAAMRCLHKTGSLHPALRRLSADFFCHVLNLPRREGEIWFARQLTDFDAAINQGNWWLAA 372 Query: 397 STGNDSVPYFRIFNPTIQGK--RFDPQGTFIRHWLPELNNVPTQYIHAP 443 S R P I R DP GTFI+ +PEL ++ +H P Sbjct: 373 S---------RHTCPDIAAASYRTDPDGTFIKRHIPELAHLSADTVHTP 412 >gi|240113824|ref|ZP_04728314.1| putative deoxyribodopyrimidine photolyase [Neisseria gonorrhoeae MS11] gi|268599892|ref|ZP_06134059.1| deoxyribodopyrimidine photolyase [Neisseria gonorrhoeae MS11] gi|268584023|gb|EEZ48699.1| deoxyribodopyrimidine photolyase [Neisseria gonorrhoeae MS11] Length = 432 Score = 119 bits (299), Expect = 7e-25, Method: Compositional matrix adjust. Identities = 126/469 (26%), Positives = 189/469 (40%), Gaps = 91/469 (19%) Query: 1 MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHF 60 + A T + LVW R +LRI DN AL AA + VI + I E + R++ F Sbjct: 9 LYADTRAAHTLVWFRQNLRIRDNAALCAAVAEG-SPVIGICIDDAET-----DNPRRAAF 62 Query: 61 IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120 S ++ + L+++GI S L ++ + + + + + D Sbjct: 63 YRQSAAELAQGLARRGIPLYTAA------SPAGLVRLAVRLNIRAVIADESHTFADKLAD 116 Query: 121 KLLEKRLQHRVICKSF--DDSV-----LLPPGSILNHALQMYK----------------V 157 L L I +F D SV L P + Y+ + Sbjct: 117 NALWHELDKHGIALTFVNDRSVFGKTDLTPDNGTAHTDFNRYREVWLDRFSKQPPAGSDL 176 Query: 158 YTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALH 217 + +R+ +NL P PA G P N GE A Sbjct: 177 FAAYRQPFPENL------PAPPPAALSDGIFLPQNG-----------------GETAAWR 213 Query: 218 ILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSG 277 R+F ++ Y V +D P+ + TS + YLS+G +SPR L E ++ + Sbjct: 214 QWRRFLEQAASYSV-LKDFPSRKNTSLMGAYLSVGCISPRL----LARESLERRLN---- 264 Query: 278 AFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHL-LQAWKQGYTGFPII 336 +W + +I R+F+ L + + + N + L L W+QG TG PII Sbjct: 265 --AWADNIIRRDFFLQLALQHAD----------DDPSDGNPEHTLRLTLWQQGRTGIPII 312 Query: 337 DAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAA 396 DAAMR L+ G +H LR ++A F L + R GE +F QL D D A N G W+ AA Sbjct: 313 DAAMRCLHKTGSLHPALRRLSADFFCHVLNLPRREGEIWFARQLTDFDAAINQGNWRLAA 372 Query: 397 STGNDSVPYFRIFNPTIQGK--RFDPQGTFIRHWLPELNNVPTQYIHAP 443 S R P I R DP GTFI+ +PEL ++ +H P Sbjct: 373 S---------RHTCPDIAAASYRTDPDGTFIKRHIPELAHLSADTVHTP 412 >gi|325284597|ref|YP_004264060.1| Uracil-DNA glycosylase [Deinococcus proteolyticus MRP] gi|324316086|gb|ADY27200.1| Uracil-DNA glycosylase [Deinococcus proteolyticus MRP] Length = 757 Score = 119 bits (299), Expect = 8e-25, Method: Compositional matrix adjust. Identities = 125/513 (24%), Positives = 207/513 (40%), Gaps = 81/513 (15%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 V +VW + DLR++D+ AL A V+ ++I PEQ + ++ L + Sbjct: 4 VAVVWFKKDLRVSDHAALSRAAER--GPVLPLYIYEPEQLGHEEFAGHHLTYLNECLHDL 61 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128 L++ G + +++E L++ + V L+ + Q N V + L Sbjct: 62 SARLARLGAPL----VIRYGEAVEVLEALSREVTVGSLWAH-QETGNGVSFARDLRVHAW 116 Query: 129 HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQAD-----------LRSL 177 R F Y P ++ +I+ +V D L Sbjct: 117 ARARGIPF---------------------YEPPQQGVIRRMVNRDGWADAWEERMSAPPL 155 Query: 178 PVPAIRLTGPVTPSNIPRFFDYPFQAID---PMFPIGEQNALH-ILRKFCKEKV--YYYV 231 PVPA+R TP+++ D+ + + P G + A H IL F + + Y + Sbjct: 156 PVPALRGVA-GTPASL-GVLDHAALRVPLGRRVIPQGGEAAAHDILESFLQRRGRDYMWA 213 Query: 232 EQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKS----GAFSWLNELIW 287 + A S+LS L+ G +S R ++ + + + S+ + L W Sbjct: 214 MSSPLTAEDACSRLSAPLAFGTVSARTVLLATRQALARAVAEQDAQWERSLRSFESRLHW 273 Query: 288 REFYRHLMAFYPSV---CMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLN 344 R+ + + P + + + + E WN++ Q W++G TG+P+IDA MR L Sbjct: 274 RDHFIQRLESEPRMEFENLNRAYDGLREP-HWNEE--YFQRWQEGQTGYPLIDATMRMLR 330 Query: 345 TIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWA---ASTGND 401 GW++ R+R + SF + L + WR + Q LD N G W+ +G Sbjct: 331 ATGWLNFRMRAMLVSFAAQHLWLHWRRPGLFLARQWLD-----NEPGIHWSQMQMQSGTV 385 Query: 402 SVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSW-------LDKNDLSL 454 + RI++PT Q + DP G FIR W+PEL VP APH W L L L Sbjct: 386 GINRSRIYSPTRQAREQDPDGEFIRRWVPELAGVP-----APHIWRPWELPPLAARGLGL 440 Query: 455 ----NYPLPIVDHKKACHHTLNQYYAAKKQSLL 483 +YP P+VD + A + L Sbjct: 441 RLGRDYPYPVVDEHAPAREAHRRLQAVRDTPLF 473 >gi|51948354|gb|AAU14281.1| cryptochrome-like protein 2 [Ostreococcus tauri] Length = 548 Score = 119 bits (299), Expect = 8e-25, Method: Compositional matrix adjust. Identities = 84/259 (32%), Positives = 123/259 (47%), Gaps = 31/259 (11%) Query: 243 SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVC 302 S+LSPYL G++SPR ++ DL+ K +++ W YR +A++ Sbjct: 162 SRLSPYLRFGMISPRTVYH-------DLVKKDGKN----ISKTFWHRLYRRELAYW--QL 208 Query: 303 MGKPFIPWT------EKIEW---NKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRL 353 P +P T E W ++ L+ W++G TGFP++D MR+L GWMH Sbjct: 209 HHWPDLPKTSVRSHYENRAWLSGDEADEALRRWQRGETGFPVVDCGMRRLWRTGWMHQTE 268 Query: 354 RMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFR-IFNPT 412 RMITA+FLV L V W G ++FM L+D D A N+ WQ A +G D +F P Sbjct: 269 RMITATFLVDYLGVHWTRGADWFMRTLVDADEAINSMMWQNAGKSGLDQWDFFEGTLAPD 328 Query: 413 IQGKRFDPQGTFIRHWLPELNNVPTQYI-----HAPHSWLDKNDLSLNYPLP---IVDHK 464 + DP G I W+PEL +P Y+ A + L + D+ L P IVD Sbjct: 329 GSARAHDPHGDAIARWIPELAALPRGYLRHRPWEASKATLAECDVELGSTYPRRMIVDLD 388 Query: 465 KACHHTLNQYYAAKKQSLL 483 +A L+ + L+ Sbjct: 389 RARQRMLDDVTTIRHAELV 407 >gi|119945273|ref|YP_942953.1| DNA photolyase FAD-binding subunit [Psychromonas ingrahamii 37] gi|119863877|gb|ABM03354.1| DNA photolyase, FAD- binding- domain protein [Psychromonas ingrahamii 37] Length = 448 Score = 119 bits (299), Expect = 9e-25, Method: Compositional matrix adjust. Identities = 128/477 (26%), Positives = 196/477 (41%), Gaps = 77/477 (16%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISAR-----QSHFI 61 M L W+ DLRI DN AL A + +++ V++ + + + ++ + F+ Sbjct: 1 MKRTLYWVNKDLRINDNAALNLASKSD--RLLCVYVVDKQSFEANNFQSKPLGDIRWQFL 58 Query: 62 YASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDK 121 L +SLS+ G + D++ L C ++T + + E R Sbjct: 59 QGCLEDFNESLSKLGQAMHIV----YGDTLSTLMRLCESYQITDVITTKLPGTYENRLIT 114 Query: 122 LLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQ---ADLRSLP 178 L +RL I D L S+ ++ Y+ FRK + + ++ + ++SLP Sbjct: 115 QLNERLPELTI-DQVDQFTLFTKKSLPFELDELPISYSKFRKKMAEVIIPEPVSTVQSLP 173 Query: 179 VPAIRLTGPV--------TPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKF--CKEKVY 228 L P T S I + F+ GEQ L LR++ Sbjct: 174 SMFDTLPAPTRFKPEWLPTVSAIKAKQGFEFEG-------GEQQGLKHLRQYFSSNSPAE 226 Query: 229 YYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWR 288 Y + ++ + +S+LSP+L+ G +S RQ N L E F K S +L EL+WR Sbjct: 227 YKQVRNNLDGWKNSSKLSPWLNSGCISVRQVMNNLAE-FEQQHGKNSSTECLYL-ELLWR 284 Query: 289 EFY--------------------RHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQ 328 E+Y R L FYP +NK W Sbjct: 285 EYYQWVHYKVGAKTYQFKGLAKHRPLTTFYPE--------------RFNK-------WCL 323 Query: 329 GYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASN 388 G T + +++A M +L G++ NR R I AS LV +L VDWR G +F QL+D D A N Sbjct: 324 GNTPYSLVNAFMHELRQTGYLSNRGRQIVASCLVNELSVDWRYGAAWFEEQLIDYDAAVN 383 Query: 389 NGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHS 445 G WQ+ A G D R FN Q +DP G + W+ +L+ TQ A S Sbjct: 384 WGNWQYIAGVGVDPRG-GRHFNIEKQTTLYDPNGDYQAQWI-DLSQQSTQANQALDS 438 >gi|319639589|ref|ZP_07994336.1| deoxyribodopyrimidine photolyase [Neisseria mucosa C102] gi|317399160|gb|EFV79834.1| deoxyribodopyrimidine photolyase [Neisseria mucosa C102] Length = 413 Score = 119 bits (298), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 122/454 (26%), Positives = 193/454 (42%), Gaps = 57/454 (12%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 LVW R +LR+ DN AL AA S + V++ Q + RQS F Y + ++ Sbjct: 9 LVWFRRNLRLHDNAALNAAV-ASGLPIACVWV---NQRPSENHNPRQSLFHYQAAQELHT 64 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130 L+ I Y S+ D L + + Y E+R+D LL L Sbjct: 65 RLAAHHIPL-YAVASDED-----LLPLAATLHAHTIITDEAYTEAEIRQDNLLWHNLDRA 118 Query: 131 VIC-KSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189 I + +D +L +++ Y +T +++A +Q + +P T Sbjct: 119 GIALQHANDRGILAKAPLMDANGLPYTDFTAYKQAWLQAYSEQRPSETELPV------QT 172 Query: 190 PSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYL 249 N+P F + + GE AL F + V+Y + Q + PA + TS L+ YL Sbjct: 173 GQNVPLFPAHTGAVLPAYQQGGETAALTQWHAFKQNLVHYPITQ-NFPARKNTSLLNAYL 231 Query: 250 SIGVLSPRQCWNRLKEEFVDLLIKPKSGA---FSWLNELIWREFYRHLMAFYPSVCMGKP 306 S G +SPR L+ +S A F WL++LI+R+ Y + +A++ + Sbjct: 232 SAGCISPR-------------LLAAESLANRHFEWLDKLIFRD-YCYQLAYHRRLPETTD 277 Query: 307 FIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLL 366 P E W+ G TG P+IDA++R L G +H L+ + A + L Sbjct: 278 AAPVREY------------WRNGRTGVPVIDASIRSLEATGHLHPVLQQLCAHYFCHALN 325 Query: 367 VDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIR 426 +D G + S D A N W AA +V Y + + DP G++IR Sbjct: 326 LDPNQGIAWTASVQTGTDPALNQANWHLAAQ-DTATVRYAH------RSHQIDPDGSYIR 378 Query: 427 HWLPELNNVPTQYIHAPHSWLDKNDLSLN-YPLP 459 +LPEL ++P+ IH P W +D+ + YP P Sbjct: 379 SYLPELAHLPSTLIHTP--WAAADDIDTHGYPFP 410 >gi|325203409|gb|ADY98862.1| putative deoxyribodipyrimidine photolyase [Neisseria meningitidis M01-240355] Length = 433 Score = 119 bits (298), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 127/469 (27%), Positives = 191/469 (40%), Gaps = 91/469 (19%) Query: 1 MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHF 60 + A T + LVW R +LRI DN AL AA +I ++I E + R++ F Sbjct: 9 LYADTCAAHTLVWFRQNLRIRDNAALCAAVAEG-LPIIGIWIDDAET-----DNPRRAAF 62 Query: 61 IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120 S ++ + L+ +GI Y S + L ++ + + + + + D Sbjct: 63 YRQSAAELAQGLAGRGIPL-YTAASPAE-----LVRLAVRLNIRAVIADESHTFADKLAD 116 Query: 121 KLLEKRLQHRVICKSF--DDSV-----LLPPGSILNHALQMYK----------------V 157 L L I +F D +V L+P G + Y+ + Sbjct: 117 NALWHELNKHGIALTFVNDRAVFGKTDLIPDGGTAHTDFDRYREVWLDRFSKQPPAGPDL 176 Query: 158 YTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALH 217 + +R+ +NL S P PA G P N GE A Sbjct: 177 FAAYRQPFPENL------SAPPPAALSDGIFLPQNS-----------------GETAAWR 213 Query: 218 ILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSG 277 R+F ++ Y V +D P+ + TS + YLS G +SPR L E ++ + Sbjct: 214 QWRRFLEQADSYSV-LKDFPSRKHTSLMGAYLSAGCISPRL----LARESLERRLN---- 264 Query: 278 AFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHL-LQAWKQGYTGFPII 336 +W + +I R+F+ L + + + N + L L W+QG TG PII Sbjct: 265 --AWADNIIRRDFFLQLALQHTD----------DDPSDGNPEHTLRLTLWQQGQTGIPII 312 Query: 337 DAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAA 396 DAAMR L+ G +H LR ++A F L + R GE +F QL D D A N G W AA Sbjct: 313 DAAMRCLHKTGSLHPALRRLSADFFCHVLNLPRREGEIWFARQLTDFDAAINQGNWWLAA 372 Query: 397 STGNDSVPYFRIFNPTIQGK--RFDPQGTFIRHWLPELNNVPTQYIHAP 443 S R P I R DP GTFI+ +PEL ++ +H P Sbjct: 373 S---------RHTCPDIAAASYRTDPDGTFIKRHIPELAHLSADTVHTP 412 >gi|167837240|ref|ZP_02464123.1| deoxyribodipyrimidine photolyase [Burkholderia thailandensis MSMB43] Length = 148 Score = 119 bits (298), Expect = 1e-24, Method: Composition-based stats. Identities = 62/157 (39%), Positives = 84/157 (53%), Gaps = 38/157 (24%) Query: 280 SWLNELIWREFYRHLMAFYPSVCMGKPF----IP------WTEKIEWNKDSHLLQAWKQG 329 ++L+EL WREF C +P+ +P + + W D L AW++G Sbjct: 19 TFLSELGWREF-----------CWAQPYRFPDLPRRSLRHTLDGMPWRDDPAALAAWRRG 67 Query: 330 YTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNN 389 TG+P +DA MR+L G MHNR R + SFLVK LL+DWR+G+ +F L+D D A Sbjct: 68 ATGYPFVDAGMRELRATGGMHNRARTVCTSFLVKHLLIDWRVGDAWFRDTLVDADAA--- 124 Query: 390 GGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIR 426 PYFRIFNP QG+RFDP G ++R Sbjct: 125 --------------PYFRIFNPVAQGRRFDPDGAYVR 147 >gi|254671546|emb|CBA09171.1| Deoxyribodipyrimidine photolyase [Neisseria meningitidis alpha153] Length = 433 Score = 119 bits (298), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 128/469 (27%), Positives = 191/469 (40%), Gaps = 91/469 (19%) Query: 1 MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHF 60 + A T + LVW R +LRI DN AL AA VI ++I E + R++ F Sbjct: 9 LYADTRAAHTLVWFRQNLRIRDNAALCAAVAEG-LPVIGIWIDDAET-----DNPRRAAF 62 Query: 61 IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120 S ++ + L+ +GI Y S + L ++ + + + + + D Sbjct: 63 YRQSAAELAQGLAGRGIPL-YTAASPAE-----LVRLAVRLNIRAVIADESHTFADKLAD 116 Query: 121 KLLEKRLQHRVICKSF--DDSV-----LLPPGSILNHALQMYK----------------V 157 L L I +F D +V L+P G + Y+ + Sbjct: 117 NALWHELDKHGIALTFVNDRAVFGKTDLIPDGGTAHTDFDRYREVWLDRFSKQPPAGPDL 176 Query: 158 YTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALH 217 + +R+ +NL S P PA G P N GE A Sbjct: 177 FAAYRQPFPENL------SAPPPAALSDGIFLPQNS-----------------GETAAWR 213 Query: 218 ILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSG 277 R+F ++ Y V +D P+ + TS + YLS G +SPR L E ++ + Sbjct: 214 QWRRFLEQADSYSV-LKDFPSRKHTSLMGAYLSAGCISPRL----LARESLERRLN---- 264 Query: 278 AFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHL-LQAWKQGYTGFPII 336 +W + +I R+F+ L + + + N + L L W+QG TG PII Sbjct: 265 --AWADNIIRRDFFLQLALQHTD----------DDPSDGNPEHTLRLTLWQQGRTGIPII 312 Query: 337 DAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAA 396 DAAMR L+ G +H LR ++A F L + R GE +F QL D D A N G W AA Sbjct: 313 DAAMRCLHKTGSLHPALRRLSADFFCHVLNLPRREGEIWFARQLTDFDAAINQGNWWLAA 372 Query: 397 STGNDSVPYFRIFNPTIQGK--RFDPQGTFIRHWLPELNNVPTQYIHAP 443 S R P I R DP GTFI+ +PEL ++ +H P Sbjct: 373 S---------RHTCPDIAAASYRTDPDGTFIKRHIPELAHLSADTVHTP 412 >gi|325202884|gb|ADY98338.1| putative deoxyribodipyrimidine photolyase [Neisseria meningitidis M01-240149] Length = 433 Score = 119 bits (298), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 129/470 (27%), Positives = 191/470 (40%), Gaps = 93/470 (19%) Query: 1 MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHF 60 + A T + LVW R +LRI DN AL AA VI ++I E + R++ F Sbjct: 9 LYADTRAAHTLVWFRQNLRIRDNAALCAAVAEG-LPVIGIWIDDAET-----DNPRRAAF 62 Query: 61 IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120 S ++ + L+ +GI Y S + L ++ + + + + + D Sbjct: 63 YRQSAAELAQGLAGRGIPL-YTAASPAE-----LVRLAVRLNIRAVIADESHTFADKLAD 116 Query: 121 KLLEKRLQHRVICKSF--DDSV-----LLPPGSILNHALQMYK----------------V 157 L L I +F D +V L+P G + Y+ + Sbjct: 117 NALWHELDKHGIALTFVNDRAVFGKTDLIPDGGTAHTDFDRYREVWLDRFSKQPPAGPNL 176 Query: 158 YTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALH 217 + +R+ +NL S P PA G P N GE A Sbjct: 177 FAAYRQPFPENL------SAPPPAALSDGIFLPQNS-----------------GETAAWR 213 Query: 218 ILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSG 277 R+F ++ Y V +D P+ + TS + YLS G +SPR L E ++ + Sbjct: 214 QWRRFLEQADSYSV-LKDFPSRKHTSLMGAYLSAGCISPRL----LARESLERRLN---- 264 Query: 278 AFSWLNELIWREFYRHLMAFYP--SVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPI 335 +W + +I R+F+ L + S G P + + L W+QG TG PI Sbjct: 265 --AWADNIIRRDFFLQLALQHTDDSPSDGNP-----------EHTLRLTLWQQGQTGIPI 311 Query: 336 IDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWA 395 IDAAMR L+ G +H LR ++A F L + R GE +F QL D D A N G W A Sbjct: 312 IDAAMRCLHKTGSLHPALRRLSADFFCHVLNLPRREGEIWFARQLTDFDAAINQGNWWLA 371 Query: 396 ASTGNDSVPYFRIFNPTIQGK--RFDPQGTFIRHWLPELNNVPTQYIHAP 443 AS R P I R DP GTFI+ +PEL ++ +H P Sbjct: 372 AS---------RHTCPDIAAASYRTDPDGTFIKRHIPELAHLSADTVHTP 412 >gi|316985228|gb|EFV64180.1| FAD binding domain of DNA photolyase family protein [Neisseria meningitidis H44/76] gi|325141125|gb|EGC63628.1| putative deoxyribodipyrimidine photolyase [Neisseria meningitidis CU385] gi|325199492|gb|ADY94947.1| putative deoxyribodipyrimidine photolyase [Neisseria meningitidis H44/76] Length = 433 Score = 119 bits (298), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 126/469 (26%), Positives = 191/469 (40%), Gaps = 91/469 (19%) Query: 1 MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHF 60 + A T + LVW R +LRI DN AL AA +I ++I E + R++ F Sbjct: 9 LYADTCAAHTLVWFRQNLRIRDNAALCAAVAEG-LPIIGIWIDDAET-----DNPRRAAF 62 Query: 61 IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120 S ++ + L+ +GI Y S + L ++ + + + + + D Sbjct: 63 YRQSAAELAQGLAGRGIPL-YTAASPAE-----LVRLAVRLNIRTVIADESHTFADKLAD 116 Query: 121 KLLEKRLQHRVICKSF--DDSV-----LLPPGSILNHALQMYK----------------V 157 L L I +F D +V L+P G Y+ + Sbjct: 117 NALWHELDKHGIALTFVNDRAVFGKTDLIPDGGTAYADFDRYREVWLDRFSKQPPAGPDL 176 Query: 158 YTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALH 217 + +R+ +NL S P PA G P N GE A Sbjct: 177 FAAYRQPFPENL------SAPQPAALSDGIFLPQNS-----------------GETAAWR 213 Query: 218 ILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSG 277 R+F ++ Y V +D P+ + TS + YLS G +SPR L E ++ + Sbjct: 214 QWRRFLEQADSYSV-LKDFPSRKHTSLMGAYLSAGCISPRL----LARESLERRLN---- 264 Query: 278 AFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHL-LQAWKQGYTGFPII 336 +W + +I R+F+ L + + + N + L L W+QG TG PII Sbjct: 265 --AWADNIIRRDFFLQLALQHTD----------DDPSDGNPEHTLRLTLWQQGRTGIPII 312 Query: 337 DAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAA 396 DAAMR L+ G +H LR ++A F L + R GE +F QL D D A N G W+ AA Sbjct: 313 DAAMRCLHKTGSLHPALRRLSADFFCHVLNLPRREGEIWFARQLTDFDAAINQGNWRLAA 372 Query: 397 STGNDSVPYFRIFNPTIQGK--RFDPQGTFIRHWLPELNNVPTQYIHAP 443 S R P I + DP GTF+R +PEL ++ +H P Sbjct: 373 S---------RHTCPDIAAAAHKTDPDGTFVRRHIPELAHLSADTVHTP 412 >gi|308811873|ref|XP_003083244.1| Deoxyribodipyrimidine photolyase/cryptochrome (ISS) [Ostreococcus tauri] gi|116055123|emb|CAL57519.1| Deoxyribodipyrimidine photolyase/cryptochrome (ISS) [Ostreococcus tauri] Length = 489 Score = 119 bits (298), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 84/259 (32%), Positives = 123/259 (47%), Gaps = 31/259 (11%) Query: 243 SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVC 302 S+LSPYL G++SPR ++ DL+ K +++ W YR +A++ Sbjct: 103 SRLSPYLRFGMISPRTVYH-------DLVKKDGKN----ISKTFWHRLYRRELAYW--QL 149 Query: 303 MGKPFIPWT------EKIEW---NKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRL 353 P +P T E W ++ L+ W++G TGFP++D MR+L GWMH Sbjct: 150 HHWPDLPKTSVRSHYENRAWLSGDEADEALRRWQRGETGFPVVDCGMRRLWRTGWMHQTE 209 Query: 354 RMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFR-IFNPT 412 RMITA+FLV L V W G ++FM L+D D A N+ WQ A +G D +F P Sbjct: 210 RMITATFLVDYLGVHWTRGADWFMRTLVDADEAINSMMWQNAGKSGLDQWDFFEGTLAPD 269 Query: 413 IQGKRFDPQGTFIRHWLPELNNVPTQYI-----HAPHSWLDKNDLSLNYPLP---IVDHK 464 + DP G I W+PEL +P Y+ A + L + D+ L P IVD Sbjct: 270 GSARAHDPHGDAIARWIPELAALPRGYLRHRPWEASKATLAECDVELGSTYPRRMIVDLD 329 Query: 465 KACHHTLNQYYAAKKQSLL 483 +A L+ + L+ Sbjct: 330 RARQRMLDDVTTIRHAELV 348 >gi|213650723|ref|ZP_03380776.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp. enterica serovar Typhi str. J185] Length = 158 Score = 119 bits (298), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 62/145 (42%), Positives = 89/145 (61%), Gaps = 2/145 (1%) Query: 123 LEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAI 182 +EK L VIC+ FDDSV+L PG+++ +MYKV+TPF+ A ++ L + +P P I Sbjct: 1 MEKTLPS-VICEGFDDSVILAPGAVMTGNHEMYKVFTPFKNAWLKRLKEDIPPCVPAPKI 59 Query: 183 RLTGPVTPSNIPRFFDYPFQAID-PMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQG 241 R++G ++ P +YP QA D +FP+ E + LR FC + Y +RD PA+ G Sbjct: 60 RVSGALSIPLTPVSLNYPQQAFDAALFPVEENAVIAQLRHFCSQGADEYASRRDFPAVDG 119 Query: 242 TSQLSPYLSIGVLSPRQCWNRLKEE 266 TS+LS L+ G LSPRQC +RL E Sbjct: 120 TSRLSASLATGGLSPRQCLHRLLAE 144 >gi|109896482|ref|YP_659737.1| deoxyribodipyrimidine photolyase [Pseudoalteromonas atlantica T6c] gi|109698763|gb|ABG38683.1| deoxyribodipyrimidine photo-lyase family protein (cryptochrome) [Pseudoalteromonas atlantica T6c] Length = 495 Score = 119 bits (298), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 88/273 (32%), Positives = 137/273 (50%), Gaps = 25/273 (9%) Query: 206 PMFPIG-EQNALHILRKFCKE--KVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCW-- 260 P F +G E+ A + L F KE K Y Y I + S+LSPYL+ G +S RQ + Sbjct: 191 PAFQLGGEKRAWYTLHHFLKERGKAYAYSVSSPIKSRTACSRLSPYLAWGNISTRQVYQS 250 Query: 261 --NRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNK 318 ++ ++ I W I + M F P + K ++ + + K Sbjct: 251 TASKKHKDGWQRAINAFRSRLHWHCHFIQKFESESDMEFRP---VNKAYLAYEYEQGEQK 307 Query: 319 DSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMS 378 D++L QAWK G TG PI+DA++R L+ G+++ R+R + SFL L +DWR G + Sbjct: 308 DANL-QAWKTGQTGIPIVDASIRCLHQTGYLNFRMRAMLVSFLCHHLNIDWREGAIHLAQ 366 Query: 379 QLLDGDLASNNGGWQWAAS-TGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPT 437 LD + + +Q AS TG + + R++NP Q + DPQG FIR ++PE++++P Sbjct: 367 LFLDFEPGIHYPQFQMQASVTGTNLI---RLYNPVKQSQDKDPQGQFIRRFIPEISDLPD 423 Query: 438 QYIHAPHSWL--------DKNDLSLNYPLPIVD 462 IH P WL + +L YP P++D Sbjct: 424 ALIHTP--WLLTPMECQIYEVELGRTYPHPMID 454 >gi|325205374|gb|ADZ00827.1| putative deoxyribodipyrimidine photolyase [Neisseria meningitidis M04-240196] Length = 433 Score = 119 bits (298), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 126/469 (26%), Positives = 191/469 (40%), Gaps = 91/469 (19%) Query: 1 MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHF 60 + A T + LVW R +LRI DN AL AA +I ++I E + R++ F Sbjct: 9 LYADTCAAHTLVWFRQNLRIRDNAALCAAVAEG-LPIIGIWIDDAET-----DNPRRAAF 62 Query: 61 IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120 S ++ + L+ +GI Y S + L ++ + + + + + D Sbjct: 63 YRQSAAELAQGLAGRGIPL-YTAASPAE-----LVRLAVRLNIRAVIADESHTFADKLAD 116 Query: 121 KLLEKRLQHRVICKSF--DDSV-----LLPPGSILNHALQMYK----------------V 157 L L I +F D +V L+P G + Y+ + Sbjct: 117 NALWHELNKHGIALTFVNDRAVFGKTDLIPDGGTAHTDFDRYREVWLDRFSKQPPAGPDL 176 Query: 158 YTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALH 217 + +R+ +NL S P PA G P N GE A Sbjct: 177 FAAYRQPFPENL------SAPPPAALSDGIFLPQNS-----------------GETAAWR 213 Query: 218 ILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSG 277 R+F ++ Y V +D P+ + TS + YLS G +SPR L E ++ + Sbjct: 214 QWRRFLEQADSYSV-LKDFPSRKHTSLMGAYLSAGCISPRL----LARESLERRLN---- 264 Query: 278 AFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHL-LQAWKQGYTGFPII 336 +W + +I R+F+ L + + + N + L L W+QG TG PII Sbjct: 265 --AWADNIIRRDFFLQLALQHTD----------DDPSDGNPEHTLRLTLWQQGQTGIPII 312 Query: 337 DAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAA 396 DAAMR L+ G +H LR ++A F L + R GE +F QL D D A N G W AA Sbjct: 313 DAAMRCLHKTGSLHPALRRLSADFFCHVLNLPRREGEIWFARQLTDFDAAINQGNWWLAA 372 Query: 397 STGNDSVPYFRIFNPTIQGK--RFDPQGTFIRHWLPELNNVPTQYIHAP 443 S R P I + DP GTF+R +PEL ++ +H P Sbjct: 373 S---------RHTCPDIAAAAHKTDPDGTFVRRHIPELAHLSADTVHTP 412 >gi|254516979|ref|ZP_05129037.1| deoxyribodipyrimidine photo-lyase [gamma proteobacterium NOR5-3] gi|219674484|gb|EED30852.1| deoxyribodipyrimidine photo-lyase [gamma proteobacterium NOR5-3] Length = 438 Score = 119 bits (297), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 109/428 (25%), Positives = 179/428 (41%), Gaps = 31/428 (7%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 + W RNDLR+ D+ L AA + ++ ++ G+ ++ FI SL ++ K Sbjct: 8 IYWFRNDLRLHDHPGLVAAAAADELLLVYLWPRQRAWCNTQGLGEQRERFICESLTELAK 67 Query: 71 SL---SQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127 L QK +V Q D + V + ++ E R ++L +RL Sbjct: 68 DLQPLGQKLLVLQGSPELVIPDLVR-------DYGVNAIHTSQCAGSYETRALRVLRERL 120 Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQAD----LRSLPVPAIR 183 V+ + L + ++ ++PFR+ + + L + L LP P Sbjct: 121 DIPVL--EHGGNSLFQEKDVAALCPELLDSFSPFRRKVEKQLTAVEPSRNLPQLPAPPAV 178 Query: 184 LTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKE-KVYYYVEQRD-IPAIQG 241 + P+ P + G L++F + Y E R+ + ++G Sbjct: 179 QFHSIPPARTKPPLGLPLRG-------GSHAGQRRLKQFLDSGAIRQYKETRNCLDPLEG 231 Query: 242 TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLN-ELIWREFYRHLMAFYPS 300 +S LSP+LS+G +S R+ + + + + + + WL EL+WRE++ A Sbjct: 232 SSTLSPWLSLGSISAREIAAAIAQHEAE---QGANESTYWLYFELLWREYF-FWRALRDG 287 Query: 301 VCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASF 360 V + + + W G T P+++A M QL GWM NR R I AS Sbjct: 288 VNLFRHGGRQGAVSRCTFEPRNFARWCAGDTNHPLVNALMHQLVATGWMSNRGRQIAASC 347 Query: 361 LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDP 420 L+ D +DWR G +F L+D D+ SN G WQ+ A G D R FN Q ++DP Sbjct: 348 LIHDFGIDWRYGAAFFEKHLIDYDVGSNYGNWQYIAGVGADPRG-GRAFNIDKQTAQYDP 406 Query: 421 QGTFIRHW 428 G F W Sbjct: 407 DGVFTHKW 414 >gi|114798846|ref|YP_761758.1| deoxyribodipyrimidine photolyase family protein [Hyphomonas neptunium ATCC 15444] gi|114739020|gb|ABI77145.1| deoxyribodipyrimidine photolyase family protein [Hyphomonas neptunium ATCC 15444] Length = 536 Score = 119 bits (297), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 122/497 (24%), Positives = 210/497 (42%), Gaps = 49/497 (9%) Query: 8 SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67 VH++W + DLR+ D+ AL AA S A ++ ++I P W S RQ F+ SL + Sbjct: 9 GVHVIWFKRDLRVHDHAALAAAV-ASGAPILPLYIFEPGYWALPEHSRRQFDFVRDSLEE 67 Query: 68 VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEIN-EVRRDKLLEKR 126 + +L +G S +I+ + + + + + + + RD+ + + Sbjct: 68 LDAALKARGTKLVIRMGS----AIDVFSALHQKHGIAAIHAHEETGLQWTFDRDRAVRRW 123 Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 ++ I S+ P + + ALQ + N +A +R + A Sbjct: 124 ARNAGI------SLREQPQNGVQRALQSRDGWA--------NQWEAFMRRPRLVAPEALK 169 Query: 187 PVTPSN----IPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIP--AIQ 240 P + +P+ F G A+ LR F + + Y + P A Sbjct: 170 PSAADSEEWPLPQDFGLGADDCPQRQKGGRMAAVDCLRSFLESRGRTYQKSMSSPLTAAD 229 Query: 241 GTSQLSPYLSIGVLSPRQCWNRLKE------EFVDLLIKPKSGAFSWLNELIWREFYRHL 294 S+LSP+L+ G +S R+ W ++ D G+F ++ L W + Sbjct: 230 ACSRLSPHLAFGTVSIREAWQAAQKAQHEHGRSGDTGFAASIGSF--ISRLQWHCHFIQK 287 Query: 295 MAFYPSVCMGKPFIPWTEKI--EWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNR 352 + S+ + P + + E L AW +G TGFP +DA MR L GW++ R Sbjct: 288 LEDQTSI-ESRNLHPGYDGLRPEPLAGDPRLAAWIEGRTGFPFLDACMRSLRETGWLNFR 346 Query: 353 LRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPT 412 +R + F L +DW+ E+ + D + + Q ++T + P RI+NP Sbjct: 347 MRAMVMGFASHHLWLDWKQPAEHLAALFTDFEPGIHYPQAQMQSATTGMNTP--RIYNPV 404 Query: 413 IQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND--------LSLNYPLPIVDHK 464 Q + DP G FIR W+PEL+ +P +++HAP W L YP+ IVDH Sbjct: 405 KQSQDQDPDGAFIRRWVPELSGLPAEWLHAP--WEAPASVRARAGIVLGQTYPMRIVDHM 462 Query: 465 KACHHTLNQYYAAKKQS 481 A ++ +A +K++ Sbjct: 463 AAAEEARSRIFAVRKRA 479 >gi|110667407|ref|YP_657218.1| deoxyribodipyrimidine photolyase [Haloquadratum walsbyi DSM 16790] gi|109625154|emb|CAJ51573.1| deoxyribodipyrimidine photolyase [Haloquadratum walsbyi DSM 16790] Length = 719 Score = 119 bits (297), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 95/313 (30%), Positives = 143/313 (45%), Gaps = 50/313 (15%) Query: 172 ADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHI-LRKFCKEKVYYY 230 D L +P TG +TPS + + + M P G A LR F +++ Y Sbjct: 270 GDTTQLTIP----TG-ITPSVVEKT--HKINPTKKMVPTGTHRAATTQLRAFV-DQIGSY 321 Query: 231 VEQRDIP--AIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWR 288 P A GTS LSPY + G+LS RQ ++V+ G + + LIW Sbjct: 322 PSNISAPQDARTGTSGLSPYFNFGLLSIRQV-----HQYVNNNTPECRGRRMFTSRLIWN 376 Query: 289 EFYRHLMAFYPSVCMGKPFIPWTEKI------EWNKDSH---LLQAWKQGYTGFPIIDAA 339 Y +A + WT++ E+N D H L+ AWK G TGFP++DA+ Sbjct: 377 CHYNQKLADWAG---------WTDRAVNPAFEEFNADRHNPALVDAWKHGQTGFPMVDAS 427 Query: 340 MRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTG 399 MR L GW++ R+R + S L W IG ++F L+D D+ N QW + G Sbjct: 428 MRCLRETGWLNFRMRAMCVSIFTHILQQPWWIGADWFHHHLIDSDVGINYT--QWQSQAG 485 Query: 400 NDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSL----- 454 P R++NP Q + D G +I W+PEL+++P Q+ P ++ L++ Sbjct: 486 LIGKPSQRVYNPRKQVRDHDSDGEWITKWVPELSDLPAQHFPRP----ERTPLAVQSECN 541 Query: 455 -----NYPLPIVD 462 +YP P+VD Sbjct: 542 VIIGDDYPRPVVD 554 >gi|254452890|ref|ZP_05066327.1| deoxyribodipyrimidine photolyase family protein [Octadecabacter antarcticus 238] gi|198267296|gb|EDY91566.1| deoxyribodipyrimidine photolyase family protein [Octadecabacter antarcticus 238] Length = 445 Score = 119 bits (297), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 88/304 (28%), Positives = 137/304 (45%), Gaps = 25/304 (8%) Query: 192 NIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQG--TSQLSPYL 249 N P F + P + G + A+ LR F + Y+ P S+LS +L Sbjct: 112 NDPIFGNVPIGKVQKG---GRKQAVADLRSFLNHRSRQYLYHISAPDSSEFHCSRLSAHL 168 Query: 250 SIGVLSPRQCWNRLKEEFVDLLIKPKSGAF-----SWLNELIWREFYRHLMAFYPSV--- 301 + G LS R+ + + L ++ +F ++ + L WR + + P + Sbjct: 169 AWGTLSVREVAQSIVKRRAQL-SPDENKSFGRNLTAFGSRLAWRCHFIQKIEDQPEIETH 227 Query: 302 CMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFL 361 CM F ++ + D H QAW G TG+P +DA MR L GW+ R+R + SF Sbjct: 228 CMHPAFEGL--RVGEHNDLHF-QAWASGQTGYPFVDACMRNLTAEGWITFRMRAMLVSFA 284 Query: 362 VKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQ 421 L +DWR+ E+ D + + Q +G + R++NP Q DP+ Sbjct: 285 SYQLWLDWRVTGEHLARLFTDYEPGIHYS--QLQMQSGVTGINTMRVYNPIKQSMEHDPK 342 Query: 422 GTFIRHWLPELNNVPTQYIHAPHSW----LDKNDLSL--NYPLPIVDHKKACHHTLNQYY 475 GTFIR W+PEL +VP ++IH P W +D D +L +YP P+VD + Q Sbjct: 343 GTFIRKWVPELKSVPDEFIHEPWKWEKTLIDDRDFTLGQDYPAPLVDQAVSAKAAKQQIS 402 Query: 476 AAKK 479 A +K Sbjct: 403 AIRK 406 >gi|269961334|ref|ZP_06175699.1| conserved hypothetical protein [Vibrio harveyi 1DA3] gi|269833885|gb|EEZ87979.1| conserved hypothetical protein [Vibrio harveyi 1DA3] Length = 462 Score = 119 bits (297), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 125/455 (27%), Positives = 196/455 (43%), Gaps = 75/455 (16%) Query: 8 SVHLVWLRNDLRITDNKALYAACHNSDAKV-------IAVFIATPEQWRQHGISARQSHF 60 ++ L W NDLR+ DN L A D + ++ ++ Q + G + +Q F Sbjct: 16 TIGLYWFTNDLRLHDNPLLLRASAEVDLLICIYCYPKVSSYLKQYAQEPEFGFAKQQ--F 73 Query: 61 IYASLLQVQKSLS---QKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEV 117 + SL + SL+ Q+ V H + + L VT L+ + +E Sbjct: 74 LDESLHCLNLSLNALNQRLQVVDLHPYQAIKHAADKLG-------VTHLYADAVAGSDEQ 126 Query: 118 RRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQ-MYKVYTPFRKAL----IQNLVQA 172 ++ H + +S S+ L L+ + +T FRK + + V+A Sbjct: 127 DVVDNIQAEAPHLAVIQSEVRSLFCVED--LPFELEALPDTFTKFRKKVEKLALAEPVEA 184 Query: 173 DLR------SLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNAL-HILRKFCKE 225 R L +P + LT V PS +F GE+ L H + F Sbjct: 185 VTRLPALPDGLALPTLSLTRDVQPS---------------LFTGGERAGLEHCRQYFAST 229 Query: 226 KVYYYVEQRD-IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFS---W 281 Y + R+ + + +++ SP+L+ G LSP+ + LK + +GA W Sbjct: 230 LASEYKQTRNGLDGMDYSTKFSPWLAHGCLSPKTIYAMLKR------YEAANGANDSTYW 283 Query: 282 LN-ELIWREF-------YRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGF 333 + EL+WRE+ Y+ + + + P + +H Q WK+G T F Sbjct: 284 IYFELLWREYFYWYARRYKRQLFRFGGIQNQAPLTSFY--------AHRFQQWKKGETPF 335 Query: 334 PIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQ 393 PI++A M QLN G+M NR R + AS LV +L ++WR G YF SQL+D D+ASN G WQ Sbjct: 336 PIVNACMHQLNETGYMSNRGRQLVASCLVHELGLEWRYGAAYFESQLVDYDVASNWGNWQ 395 Query: 394 WAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHW 428 + A G D R FN Q + +DP FI W Sbjct: 396 YLAGVGADPRGS-RQFNLEKQTEMYDPHMEFIDRW 429 >gi|91224260|ref|ZP_01259523.1| deoxyribodipyrimidine photolyase [Vibrio alginolyticus 12G01] gi|91191171|gb|EAS77437.1| deoxyribodipyrimidine photolyase [Vibrio alginolyticus 12G01] Length = 422 Score = 119 bits (297), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 96/287 (33%), Positives = 136/287 (47%), Gaps = 37/287 (12%) Query: 157 VYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPS-NIPRFFDYPFQAIDPMFPIGEQNA 215 +T FRK V+ S P +IR P+ N+P Y F A F GE Sbjct: 125 TFTQFRKQ-----VEGLDISRPHESIRSLPPIPLGVNLPSVTAYYFDA-KAAFHGGESRG 178 Query: 216 L-HILRKFCKEKVYYYVEQRD-IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIK 273 L H + F Y + R+ + + +++ SP+L+ G +SP+ + LK + Sbjct: 179 LEHCRQYFASTLASEYKQTRNGLDGMDYSTKFSPWLAHGCVSPKTIYAMLKR------YE 232 Query: 274 PKSGAFS---WLN-ELIWREFY--------RHLMAFYPSVCMGKPFIPWTEKIEWNKDSH 321 ++GA W+ EL+WRE++ R L F + P + +H Sbjct: 233 AENGANDSTYWIYFELLWREYFYWYARRHKRQLFRF-GGIQNRAPLTSFY--------AH 283 Query: 322 LLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLL 381 Q WK+G T FPI++A M QLN G+M NR R + AS LV +L +DWR G YF SQL+ Sbjct: 284 RFQQWKKGETPFPIVNACMHQLNETGYMSNRGRQLVASCLVHELGLDWRYGAAYFESQLV 343 Query: 382 DGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHW 428 D D+ASN G WQ+ A G D R FN Q + +DP FI W Sbjct: 344 DYDVASNWGNWQYLAGVGADPRGS-RQFNLEKQTEMYDPHMEFIDRW 389 >gi|325131015|gb|EGC53742.1| putative deoxyribodipyrimidine photolyase [Neisseria meningitidis OX99.30304] Length = 433 Score = 118 bits (296), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 127/469 (27%), Positives = 191/469 (40%), Gaps = 91/469 (19%) Query: 1 MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHF 60 + A T + LVW R +LRI DN AL AA VI ++I E + R++ F Sbjct: 9 LYADTRAAHTLVWFRQNLRIRDNAALCAAVAEG-LPVIGIWIDDAET-----DNPRRAAF 62 Query: 61 IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120 S ++ + L+ +GI Y S + L ++ + + + + + D Sbjct: 63 YRQSAAELAQGLAGRGIPL-YTAASPAE-----LVRLAVRLNIRAVIADESHTFADKLAD 116 Query: 121 KLLEKRLQHRVICKSF--DDSV-----LLPPGSILNHALQMYK----------------V 157 L L I +F D +V L+P G + Y+ + Sbjct: 117 NALWHELDKHGIALTFVNDRAVFGKTDLIPDGGTAHTDFDRYREVWLDRFSKQPPAGPDL 176 Query: 158 YTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALH 217 + +R+ +NL S P PA G P N GE A Sbjct: 177 FVAYRQPFPENL------SAPPPAALSDGIFLPQNS-----------------GETAAWR 213 Query: 218 ILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSG 277 R+F ++ Y V +D P+ + TS + YLS G +SPR L E ++ + Sbjct: 214 QWRRFLEQADSYSV-LKDFPSRKHTSLMGAYLSAGCISPRL----LARESLERRLN---- 264 Query: 278 AFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHL-LQAWKQGYTGFPII 336 +W + +I R+F+ L + + + N + L L W+QG TG PII Sbjct: 265 --AWADNIIRRDFFLQLALQHTD----------DDPSDGNPEHTLRLTLWQQGRTGIPII 312 Query: 337 DAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAA 396 DAAMR L+ G +H LR ++A F L + R GE +F QL D D A N G W AA Sbjct: 313 DAAMRCLHKTGSLHPALRRLSADFFCHVLNLPRREGEIWFARQLTDFDAAINQGNWWLAA 372 Query: 397 STGNDSVPYFRIFNPTIQGK--RFDPQGTFIRHWLPELNNVPTQYIHAP 443 S R P I + DP GTF+R +PEL ++ +H P Sbjct: 373 S---------RHTCPDIAAAAHKTDPDGTFVRRHIPELAHLSADTVHTP 412 >gi|320104815|ref|YP_004180406.1| DNA photolyase FAD-binding protein [Isosphaera pallida ATCC 43644] gi|319752097|gb|ADV63857.1| DNA photolyase FAD-binding protein [Isosphaera pallida ATCC 43644] Length = 559 Score = 118 bits (296), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 109/479 (22%), Positives = 202/479 (42%), Gaps = 34/479 (7%) Query: 13 WLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQKSL 72 W++ D+R+ DN+AL A + V+ VF+ P Q SA +L ++++ + Sbjct: 23 WIKRDMRLADNEALTRAV-AEHSLVLPVFLHEPTLLAQAETSAMHWDAWTQALAELRRRV 81 Query: 73 SQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLF-YNRQYEINEVRRDKLLEKRLQHRV 131 + G + W ++ + + +F + Y E+ ++ R Sbjct: 82 RRAGAEIL----------VGWGEAVESFEAIRAVFPFTHIYAHEEIGGAFTFQRDRAVRA 131 Query: 132 ICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPA-IRLTGPVT 189 C+ +V+ P S+ + ++ +R ++ ++ ++P+ + +R T Sbjct: 132 WCRRRGVTVIERPQSSVQRGGVDRDRMGELWRSRIVAPPALPEVAAIPLTSELRTWAATT 191 Query: 190 PSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIP--AIQGTSQLSP 247 P+ P+ ++ + E +A L F +++ Y P A + S+LS Sbjct: 192 PTAPPQAEVIGWRRPSEWQNVNESSAWATLDSFLEQRGRGYSGGISSPNTAFESGSRLSV 251 Query: 248 YLSIGVLSPRQCWNRLKEEFVDLLIKP--------KSGAFSWLNELIWREFYRHLMAFYP 299 +L+ G LS RQ + + +L P + S+L L WR+ + + P Sbjct: 252 HLAWGTLSLRQAYQATQARLRELERDPAAHDATRWRRSLRSFLARLHWRDHFIQRLETEP 311 Query: 300 SVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITAS 359 + +P P + +E D LL+ W++G TGFP++DA MR L T G+ + R+R + S Sbjct: 312 EMEF-RPLHPAYDALEAEDDPELLERWRRGLTGFPLVDAVMRCLATTGFCNFRMRAMAVS 370 Query: 360 FLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFD 419 L +DWR + D + + Q A G + R +NP Q D Sbjct: 371 VACHALRLDWRTIHPHLAGVFRDYEPGIHFSQLQMQA--GVVGINTIRSYNPFKQALDHD 428 Query: 420 PQGTFIRHWLPELNNVPTQYIHAPHSWLDKN---DLSLNYPLPIVDHKKACHHTLNQYY 475 P FI W+PEL ++P + IH+ D++ YP P+VDH+ + + Y Sbjct: 429 PDARFITRWIPELRDLPAERIHS----FDQDPPRSSETTYPPPVVDHRTRTRAWVERLY 483 >gi|329902812|ref|ZP_08273260.1| Deoxyribodipyrimidine photolyase [Oxalobacteraceae bacterium IMCC9480] gi|327548607|gb|EGF33264.1| Deoxyribodipyrimidine photolyase [Oxalobacteraceae bacterium IMCC9480] Length = 508 Score = 118 bits (296), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 113/492 (22%), Positives = 207/492 (42%), Gaps = 41/492 (8%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M++ +VW + DLR+ D+ AL A + V+ +++ P W +S + F+ SL Sbjct: 1 MTLSVVWFKRDLRLHDHAALTLAA--ARGPVLCLYVIEPAMWAAQDVSNQHYQFLLESLS 58 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 ++ +L+++G + ++ LD+ Q + LF + E D ++ Sbjct: 59 ELDAALARRGGCLHV----AVGEVVDILDALLRQSPIADLFAH-----EETGNDISYQRD 109 Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 L C++ + LQ + +A ++ QA LP+P + Sbjct: 110 LAVGRWCRTHQVGWHESAQFGVVRRLQDRDKWQRHWEA---HVAQA---CLPIPVLAFAA 163 Query: 187 -PVTPSNIPRFFDYPFQAIDPMFPI----GEQNALHILRKFCKEKVYYYVEQRDIP--AI 239 P+TP+ +P DP P+ G + A+ +L+ F ++ Y P A Sbjct: 164 CPLTPAVLPSSDALGLAPDDP--PLRQRGGRRQAVAVLQSFLLDRSGQYRGGISSPLSAP 221 Query: 240 QGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLI---KPKSGAFSWLNELIWREFYRHLMA 296 S+LSPYL+ G LS R+ + +++ + + K+G + + L W + + Sbjct: 222 TACSRLSPYLAFGALSMREIVHATRKQLATMPATESRRKAGLTGFTSRLYWHCHFIQKLE 281 Query: 297 FYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMI 356 P++ + E + + A G TG+P++DA + L GW++ R+R + Sbjct: 282 SEPALEYRNLHRGYDGLREGDWNQQHFDALVAGRTGWPLVDACVEMLRQTGWLNFRMRAM 341 Query: 357 TASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGK 416 S L + WR + Q LD + + Q + T +VP RI+NP Q Sbjct: 342 LVSVAAYPLWLHWRPVGLWLARQFLDYEPGIHWSQLQMQSGTTGINVP--RIYNPIKQAH 399 Query: 417 RFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNY--------PLPIVDHKKACH 468 DP G F+R WLP + VP ++ P W +L Y +P+VD ++A Sbjct: 400 DHDPHGHFVRRWLPAMRKVPDAWLFEP--WRMPAELQARYGVVVGHDIAMPLVDLEQATR 457 Query: 469 HTLNQYYAAKKQ 480 ++ + + Q Sbjct: 458 LAKDKLFGLRAQ 469 >gi|325180459|emb|CCA14865.1| cryptochrome putative [Albugo laibachii Nc14] Length = 616 Score = 118 bits (296), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 104/344 (30%), Positives = 147/344 (42%), Gaps = 62/344 (18%) Query: 165 LIQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFC- 223 LI ++ L +PA+ + G +TPS + GE AL L FC Sbjct: 277 LIDTIIGKAYGLLTIPALDVFGYLTPSQHSFLYG------------GESVALERLEVFCS 324 Query: 224 -KEKVYYYVEQRDIPAIQ---GTSQLSPYLSIGVLSPRQCWNRLKEEFVDL---LIKPKS 276 +E+V + + + P T+ LSPYL+ G LS R + R+ F+ L + S Sbjct: 325 IEERVGCFEKPKTSPVQMNPPSTTALSPYLAFGCLSVRALFYRIM--FIQLNFSSVSKGS 382 Query: 277 GAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEW---NKDSHLLQ--------- 324 A S +L+WREF+ P + P KI W N+DS L Sbjct: 383 PATSLDGQLMWREFFYCYAHNVPEFASPEQN-PLCRKIGWRLQNEDSDPLTTHSSSKEED 441 Query: 325 --------AWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK-DLLVDWRIGEEY 375 W +G TGFP IDA MRQ+ T GW H+ R A FL + DL + W G + Sbjct: 442 LVASEQFTCWARGKTGFPWIDAIMRQILTEGWAHHLARHAVACFLTRGDLYISWIHGAKL 501 Query: 376 FMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQ-------GTFIRHW 428 F L+D D A N G W W +++ +F F F Q +I+H+ Sbjct: 502 FQELLIDMDWAINVGNWLWVSASC-----FFHDFQNVFSPSTFPQQYYNEQEAAIYIKHY 556 Query: 429 LPELNNVPTQYIHAPHSWLDKNDLSLN------YPLPIVDHKKA 466 +PEL N+P +Y+ P S+N YP PI+DH A Sbjct: 557 IPELQNMPDRYVFEPWRAPLNIQKSVNCLIGKDYPFPILDHHVA 600 Score = 38.9 bits (89), Expect = 2.0, Method: Compositional matrix adjust. Identities = 44/187 (23%), Positives = 77/187 (41%), Gaps = 16/187 (8%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 L+W R DLR+ DN AL+AA +D+ + + + A + F+ L + Sbjct: 75 LLWFRRDLRLHDNGALHAAIQATDSDTVLFPVYILHRPENKKCGAVRFQFLLECLEDIDT 134 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD-KLLEKRLQH 129 SL QK Q ++I +L ++T L + + ++RD K++ Sbjct: 135 SLRQK----QSRLLVFCGEAISFLTVLMQAWKITDLIFEKFQLPYAIKRDEKIMSMAQTL 190 Query: 130 RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189 + + + L P I+ L +V F QN + + +P P + L +T Sbjct: 191 HINVTTVSGATLHDPKEIVT--LNHNQVPLDF-----QNFLDI-VSDMPQPRLPL---LT 239 Query: 190 PSNIPRF 196 PS +P F Sbjct: 240 PSQLPSF 246 >gi|219119456|ref|XP_002180488.1| cyclobutane pyrimidine dimer 1 [Phaeodactylum tricornutum CCAP 1055/1] gi|217407961|gb|EEC47896.1| cyclobutane pyrimidine dimer 1 [Phaeodactylum tricornutum CCAP 1055/1] Length = 515 Score = 118 bits (296), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 127/510 (24%), Positives = 209/510 (40%), Gaps = 52/510 (10%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 ++WL+ DLR+TD+ L A D V +++ P+Q + + F L+ + Sbjct: 3 VIWLKRDLRLTDHGPLAAVAQRKDRDVCILYLYEPDQLAEPSVHGSHVLFANEGLVDLDT 62 Query: 71 SLSQKGIVFQYHQCSNFD----------DSIEWLDSYCLQQRVTKLFYNRQY-EINEVRR 119 LS + + + I+ L + Q+++ +L + + + R Sbjct: 63 KLSNLRRLSSGQNAAASKSFGSLTVCHCEVIQALQAIHAQKKIARLLAHMETGHMRSYAR 122 Query: 120 DKLLEKRLQHRVI----CKSFDDSVLLPPGSILNHALQMYKVYTPFRK--ALIQNLVQAD 173 DK + K + R I S L + LQM+ +R AL N+V D Sbjct: 123 DKRVRKWCRDRKIPFVELPQTGVSRCLTNRDDFHRNLQMFLKKKQYRTPTALECNIV-ID 181 Query: 174 LRSLPVPAIRLTGPVTPSNIPRFFDYPF-QAIDPMF--PIGEQNALHILRKFCKEKVYYY 230 L L G + P Q +D GE AL ILR F + + Sbjct: 182 LE--------LPGRSMEPLFAELIEIPLEQRVDRTERQQGGETTALEILRSFLYHRGVGF 233 Query: 231 VEQRDIPAIQGTS--QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELI-- 286 + P TS +LSPYL+ G +S R L+E L + WL Sbjct: 234 SKGISSPNSSWTSCSRLSPYLTWGQISLRHVVQALQERQAQLKTQKCRSDDRWLRSFTAF 293 Query: 287 -----WREFYRHLMAFYPSVC---MGKPFIPWTEK-IEWNKDSHLLQAWKQGYTGFPIID 337 WR + + P + + F P + +WN+ + QAW G TG+P++D Sbjct: 294 SSRVHWRSHFIQKLESEPEMEQRDVNAAFQPLRRQPGDWNECYY--QAWSTGNTGYPMMD 351 Query: 338 AAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAAS 397 A MR L+ GW++ R+R + SF +L +DW + LD + + Q Sbjct: 352 ACMRCLHRHGWVNFRMRAMLVSFASYNLWLDWHRFAPHLARVFLDYEPGIHYP--QIQMQ 409 Query: 398 TGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAP----HSWLDKNDLS 453 +G + R ++ T QGK DP+G F+R ++PEL +VP YIH P S K + Sbjct: 410 SGTTGINALRCYSVTKQGKEHDPRGIFVRKYIPELQSVPNDYIHEPWKMSKSMQAKCGVH 469 Query: 454 L--NYPLPIVDHKKACHHTLNQYYAAKKQS 481 + +YP PIV+ ++ + A ++++ Sbjct: 470 IGEHYPAPIVNEQETAKSAKERIAAVRRRN 499 >gi|308388508|gb|ADO30828.1| deoxyribodopyrimidine photolyase [Neisseria meningitidis alpha710] Length = 433 Score = 118 bits (296), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 127/469 (27%), Positives = 190/469 (40%), Gaps = 91/469 (19%) Query: 1 MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHF 60 + A T + LVW R +LRI DN AL A VI ++I E + R++ F Sbjct: 9 LYADTCAAHTLVWFRQNLRIRDNAALCTAVAEG-LPVIGIWIDDAET-----DNPRRAAF 62 Query: 61 IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120 S ++ + L+ +GI Y S + L ++ + + + + + D Sbjct: 63 YRQSAAELAQGLAGRGIPL-YTAASPAE-----LVRLAVRLNIRAVIADESHTFADKLAD 116 Query: 121 KLLEKRLQHRVICKSF--DDSV-----LLPPGSILNHALQMYK----------------V 157 L L I +F D +V L+P G + Y+ + Sbjct: 117 NALWHELDKHGIALTFVNDRAVFGKTDLIPDGGTAHTDFDRYREVWLDRFSKQPPAGPDL 176 Query: 158 YTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALH 217 + +R+ +NL S P PA G P N GE A Sbjct: 177 FAAYRQPFPENL------SAPPPAALSDGIFLPQNS-----------------GETAAWR 213 Query: 218 ILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSG 277 R+F ++ Y V +D P+ + TS + YLS G +SPR L E ++ + Sbjct: 214 QWRRFLEQADSYSV-LKDFPSRKHTSLMGAYLSAGCISPRL----LARESLERRLN---- 264 Query: 278 AFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHL-LQAWKQGYTGFPII 336 +W + +I R+F+ L + + + N + L L W+QG TG PII Sbjct: 265 --AWADNIIRRDFFLQLALQHTD----------DDPSDGNPEHTLRLTLWQQGRTGIPII 312 Query: 337 DAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAA 396 DAAMR L+ G +H LR ++A F L + R GE +F QL D D A N G W AA Sbjct: 313 DAAMRCLHKTGSLHPALRRLSADFFCHVLNLPRREGEIWFARQLTDFDAAINQGNWWLAA 372 Query: 397 STGNDSVPYFRIFNPTIQGK--RFDPQGTFIRHWLPELNNVPTQYIHAP 443 S R P I R DP GTFI+ +PEL ++ +H P Sbjct: 373 S---------RHTCPDIAAASYRTDPDGTFIKRHIPELAHLSADTVHTP 412 >gi|325207317|gb|ADZ02769.1| putative deoxyribodipyrimidine photolyase [Neisseria meningitidis NZ-05/33] Length = 433 Score = 118 bits (295), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 127/469 (27%), Positives = 190/469 (40%), Gaps = 91/469 (19%) Query: 1 MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHF 60 + A T + LVW R +LRI DN AL A VI ++I E + R++ F Sbjct: 9 LYADTCAAHTLVWFRQNLRIRDNAALCTAVAEG-LPVIGIWIDDAET-----DNPRRAAF 62 Query: 61 IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120 S ++ + L+ +GI Y S + L ++ + + + + + D Sbjct: 63 YRQSAAELAQGLAGRGIPL-YTAASPAE-----LVRLAVRLNIRAVIADESHTFADKLAD 116 Query: 121 KLLEKRLQHRVICKSF--DDSV-----LLPPGSILNHALQMYK----------------V 157 L L I +F D +V L+P G + Y+ + Sbjct: 117 NALWHELDKHGIALTFVNDRAVFGKTDLIPDGGTAHTDFDRYREVWLDRFSKQPPAGPDL 176 Query: 158 YTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALH 217 + +R+ +NL S P PA G P N GE A Sbjct: 177 FAAYRQPFPENL------SAPPPAALSDGIFLPQNS-----------------GETAAWR 213 Query: 218 ILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSG 277 R+F ++ Y V +D P+ + TS + YLS G +SPR L E ++ + Sbjct: 214 QWRRFLEQADSYSV-LKDFPSRKHTSLMGAYLSAGCISPRL----LARESLERRLN---- 264 Query: 278 AFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHL-LQAWKQGYTGFPII 336 +W + +I R+F+ L + + + N + L L W+QG TG PII Sbjct: 265 --AWADNIIRRDFFLQLALQHTD----------DDPSDGNPEHTLRLTLWQQGQTGIPII 312 Query: 337 DAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAA 396 DAAMR L+ G +H LR ++A F L + R GE +F QL D D A N G W AA Sbjct: 313 DAAMRCLHKTGSLHPALRRLSADFFCHVLNLPRREGEIWFARQLTDFDAAINQGNWWLAA 372 Query: 397 STGNDSVPYFRIFNPTIQGK--RFDPQGTFIRHWLPELNNVPTQYIHAP 443 S R P I R DP GTFI+ +PEL ++ +H P Sbjct: 373 S---------RHTCPDIAAASYRTDPDGTFIKRHIPELAHLSADTVHTP 412 >gi|296314842|ref|ZP_06864783.1| deoxyribodipyrimidine photolyase [Neisseria polysaccharea ATCC 43768] gi|296838342|gb|EFH22280.1| deoxyribodipyrimidine photolyase [Neisseria polysaccharea ATCC 43768] Length = 430 Score = 118 bits (295), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 128/461 (27%), Positives = 190/461 (41%), Gaps = 78/461 (16%) Query: 3 ATTAMSVH-LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFI 61 AT A +++ LVW R +LRI DN AL AA +I ++I E + R++ F Sbjct: 7 ATVAHAMYTLVWFRQNLRIRDNAALCAAVAEG-LPIIGIWIDDAET-----DNPRRAAFY 60 Query: 62 YASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDK 121 S ++ + L+ +GI Y + S L ++ + + + + + D Sbjct: 61 RQSAAELAQGLAGRGIPL-YTEVSP-----AGLVRLAVRLNIRAVIADESHTFADKLTDN 114 Query: 122 LLEKRLQHRVICKSF--DDSVL----LPPGSILNHA---------LQMYKVYTPFRKALI 166 L L I +F D SV LPP + H L + P + Sbjct: 115 ALWHELDKHGIRLTFVNDRSVFDQTDLPPDNGTAHTDFNRYRKAWLDCFSKQPPAGSDIF 174 Query: 167 QNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEK 226 Q +LP P P+ + P GE A R+F ++ Sbjct: 175 STYRQPFPENLPAP--------QPAALSDSIFLPQNG-------GETAAWRQWRRFLEQA 219 Query: 227 VYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELI 286 Y V +D P+ + TS + YLS G +SPR L E ++ + +W + +I Sbjct: 220 DSYSV-LKDFPSRKNTSLMGAYLSAGCISPRL----LARESLERRLN------AWADNII 268 Query: 287 WREFYRHLMAFYP--SVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLN 344 R+F+ L + G P + + L W+QG TG PIIDAAMR L+ Sbjct: 269 RRDFFLQLALQHADDGPSDGNP-----------EHTLRLTLWQQGQTGIPIIDAAMRCLH 317 Query: 345 TIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVP 404 G +H LR ++A F L + R GE +F QL D D A N G W+ AAS Sbjct: 318 KTGSLHPALRRLSADFFCHVLNLPRREGEIWFARQLTDFDAAINQGNWRLAAS------- 370 Query: 405 YFRIFNPTIQGK--RFDPQGTFIRHWLPELNNVPTQYIHAP 443 R P I + DP GTF+R +PEL ++P IH P Sbjct: 371 --RHTYPDIAAAAHKTDPDGTFVRRHIPELAHLPAAVIHTP 409 >gi|221134513|ref|ZP_03560818.1| deoxyribodipyrimidine photolyase [Glaciecola sp. HTCC2999] Length = 441 Score = 118 bits (295), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 123/456 (26%), Positives = 194/456 (42%), Gaps = 56/456 (12%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDA-KVIAVFIAT---------PEQWRQHGISAR 56 M+ L W +DLR+ DN L D I +F A Q+ Q + Sbjct: 1 MNNGLYWFEHDLRLADNLPLQQTIAQIDQLHCIYIFNAADFSTTKKKGAGQFNQRHMGQH 60 Query: 57 QSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINE 116 + FI +L +Q L G + D IE L++ + K F+ YE N Sbjct: 61 RYRFIRQALDDLQSQLHTFGQQLHIYYGEPLD-IIEQLNTQFNFTHIGKHFHTGVYERNL 119 Query: 117 VRRDKLL--EKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADL 174 + K+ K + + +D L P SI N + V++PFR+ ++ +A L Sbjct: 120 ISALKIQYPNKTIINTNSYTLYDIDDL--PMSIEN----LPDVFSPFRRK-VEKFCEARL 172 Query: 175 --RSLPV--PAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKF--CKEKVY 228 +LPV P + + P +P Q D + ++ KE+++ Sbjct: 173 PDNALPVSFPPVVVAEQNMPDELP-----AIQVCDKKLLAKNETVQRLIGGELKAKEQMH 227 Query: 229 YYV----------EQRD-IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSG 277 +Y E R+ + + +S+LSP+L+ G +SPRQ + E + Sbjct: 228 HYTYGTQALSEYKETRNGLEGWEFSSKLSPWLAAGCISPRQVAAAITE--YEAQHGANDS 285 Query: 278 AFSWLNELIWREFY-----RHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTG 332 + EL+WREF+ +H A Y + + + + + + W G T Sbjct: 286 TYWLFFELLWREFFQWQQLKHGKALYHRNGIQQ------KSPRGFHNKKVFEDWVNGDTA 339 Query: 333 FPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGW 392 +PII+A MRQL G+M NR R + AS + +L +DW+ G YF L+D D ASN G W Sbjct: 340 YPIINACMRQLKYTGFMSNRGRQLVASCFIHELGLDWQYGAAYFEEALIDFDPASNWGNW 399 Query: 393 QWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHW 428 Q+ A G+D R FN Q + +DP G FI +W Sbjct: 400 QYLAGVGSDPRG-CRQFNLNKQTQTYDPHGEFIGYW 434 >gi|88798414|ref|ZP_01113999.1| Deoxyribodipyrimidine photolyase [Reinekea sp. MED297] gi|88778854|gb|EAR10044.1| Deoxyribodipyrimidine photolyase [Reinekea sp. MED297] Length = 433 Score = 118 bits (295), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 118/450 (26%), Positives = 194/450 (43%), Gaps = 37/450 (8%) Query: 12 VWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSH---FIYASLLQV 68 +W D R+ DN AL A + + V Q R++ H F+ SL ++ Sbjct: 1 MWFTQDQRLDDNPALRLAAEADEMLCVFVVEQGWFQSRRYQYPQMGPHRWVFLQLSLSEL 60 Query: 69 QKSLSQKG--IVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 + L G ++ Y Q +E + + + ++ R +E+R+ + LE + Sbjct: 61 NQRLQLHGQRLLVVYGQAE-----VE-IGRLVERYDINRVVRARSPGTDELRQWRWLESQ 114 Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 C++ D + L + + ++ FR+ L + V + ++P +T Sbjct: 115 FPETEWCQA-DAATLFEDDQVAGLSRSWPMSFSAFRR-LAERWVVPAVTAMPQLPNTITQ 172 Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ---GTS 243 ++ +P + +A MF GE AL L + Y +RD AI +S Sbjct: 173 QISQLTLPDWLPNA-RASHSMFDGGESEALRHLDCYLASD-YPQTYKRDRNAIDDWDSSS 230 Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHL-------MA 296 ++SP+L+ G LS R+ +L E D G EL+WRE+++ L + Sbjct: 231 KMSPWLNAGNLSARRLKQKLDE--YDQQHGASDGTHWLFVELLWREYFQWLAQSIGTKLF 288 Query: 297 FYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMI 356 + + KP + S + W++G T + I++A MRQL G++ NR R I Sbjct: 289 HFQGLSEHKPLTSFY--------SDRFRNWREGNTPWAIVNACMRQLKETGYLSNRGRQI 340 Query: 357 TASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGK 416 AS LV +L +DWR G +F L+D D+ASN G WQ+ A G DS R FN Q + Sbjct: 341 AASALVNELALDWRYGAAWFEYCLVDYDVASNWGNWQYIAGVGTDSRG-GRHFNIDKQTE 399 Query: 417 RFDPQGTFIRHWLPELNNVPTQYIHAPHSW 446 FD G+F W + P + P W Sbjct: 400 LFDADGSFRARWAADAEPQPLDTLD-PTGW 428 >gi|254454708|ref|ZP_05068145.1| deoxyribodipyrimidine photolyase [Octadecabacter antarcticus 238] gi|198269114|gb|EDY93384.1| deoxyribodipyrimidine photolyase [Octadecabacter antarcticus 238] Length = 322 Score = 117 bits (294), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 85/286 (29%), Positives = 127/286 (44%), Gaps = 24/286 (8%) Query: 211 GEQNALHILRKFCKEKVYYYVEQRDIPAIQG--TSQLSPYLSIGVLSPRQCWNRLKEEFV 268 G + A+ LR F + Y+ P S+LS +L+ G LS R+ + + Sbjct: 5 GRKQAVADLRSFLNHRSRQYLYHISAPDSSEFHCSRLSAHLAWGTLSVREVAQSIVKRRA 64 Query: 269 DLLIKPKSG------AFSWLNELIWREFYRHLMAFYPSV---CMGKPFIPWTEKIEWNKD 319 L AF + L WR + + P + CM F ++ + D Sbjct: 65 QLSPDENKSFGRNLTAFG--SRLAWRCHFIQKIEDQPEIETHCMHPAFEGL--RVGEHND 120 Query: 320 SHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQ 379 H QAW G TG+P +DA MR L GW+ R+R + SF L +DWR+ E+ Sbjct: 121 LHF-QAWASGQTGYPFVDACMRNLTAEGWITFRMRAMLVSFASYQLWLDWRVTGEHLARL 179 Query: 380 LLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQY 439 D + + Q +G + R++NP Q DP+GTFIR W+PEL +VP ++ Sbjct: 180 FTDYEPGIHYS--QLQMQSGVTGINTMRVYNPIKQSMEHDPKGTFIRKWVPELKSVPDEF 237 Query: 440 IHAPHSW----LDKNDLSL--NYPLPIVDHKKACHHTLNQYYAAKK 479 IH P W +D D +L +YP P+VD + Q A +K Sbjct: 238 IHEPWKWEKTLIDDRDFTLGQDYPAPLVDQAVSAKAAKQQISAIRK 283 >gi|86131288|ref|ZP_01049887.1| DNA photolyase/cryptochrome, animal cryptochrome and (6-4) photolyase subfamily [Dokdonia donghaensis MED134] gi|85818699|gb|EAQ39859.1| DNA photolyase/cryptochrome, animal cryptochrome and (6-4) photolyase subfamily [Dokdonia donghaensis MED134] Length = 494 Score = 117 bits (294), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 127/510 (24%), Positives = 212/510 (41%), Gaps = 72/510 (14%) Query: 2 KATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFI 61 K+ + ++VH W + DLR+ DN+ L+ A +S+ VI ++I P S R +FI Sbjct: 3 KSKSHITVH--WFKRDLRLQDNENLWQALQHSEP-VILLYIFEPSLLDDEHYSERHFNFI 59 Query: 62 YASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQ--YEINEVRR 119 SL +Q L N+D I +Q V +F Q Y I V Sbjct: 60 KESLQDLQSRLE------------NYDTKI-----LVVQGEVIPVFKKLQQHYTIKRVYS 102 Query: 120 --DKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNL--VQA--- 172 + + K + K + S + +N+ + R++L + VQ Sbjct: 103 HVETGIRKTYDRDIAFKVYQQSQDIRWIQFINNGV---------RRSLSNRVGWVQGWEW 153 Query: 173 ---DLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPI-------GEQNALHILRKF 222 + + + VP +G + F+ F + P G L F Sbjct: 154 WMTEPQRIFVPQ---SGDLVTKKEVEVFEQYFDCVSLQTPENTAFQKGGTTMGLRYYDSF 210 Query: 223 CKEKVYYYVEQRDIP--AIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFS 280 ++++ Y P A + S+LSPY++ G LS R+ W R K+ K + F+ Sbjct: 211 LRDRIKNYNAHISKPLLARKSCSRLSPYIAWGNLSVREVWQRAKKLRQASPYKRQIDGFT 270 Query: 281 ----WLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPII 336 W I + M F V + + F ++ + +AW++G TG+P++ Sbjct: 271 SRLRWSAHFIQKFEMEDTMEF---VSVNRGF----HSLKKVSNPVYAKAWQEGKTGYPLV 323 Query: 337 DAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAA 396 DA MR L G+++ R+R +T SF +L W+ + Q LD + + Q A Sbjct: 324 DACMRCLVETGYLNFRMRALTLSFFTHNLWQPWQDASAFLARQFLDFEPGIHYPQIQMQA 383 Query: 397 STGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAP--HSWLDK----N 450 G + RI+NP DP+G FI+ W+PEL VP YIH P S L++ Sbjct: 384 --GETGINMLRIYNPVKNSYEHDPEGEFIKKWIPELREVPLSYIHEPWTMSLLEQQFCNT 441 Query: 451 DLSLNYPLPIVDHKKACHHTLNQYYAAKKQ 480 + +YP PIV+ K+ + + + K++ Sbjct: 442 TIGKDYPAPIVNIKETQKYATDTMWKYKER 471 >gi|145354261|ref|XP_001421409.1| predicted protein [Ostreococcus lucimarinus CCE9901] gi|145354330|ref|XP_001421440.1| predicted protein [Ostreococcus lucimarinus CCE9901] gi|144581646|gb|ABO99702.1| predicted protein [Ostreococcus lucimarinus CCE9901] gi|144581677|gb|ABO99733.1| predicted protein [Ostreococcus lucimarinus CCE9901] Length = 565 Score = 117 bits (294), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 93/308 (30%), Positives = 134/308 (43%), Gaps = 29/308 (9%) Query: 191 SNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCK---EKVYYYVEQRDIPAIQGTSQLSP 247 S++ + D+ I + + E A F EK + DI A S LSP Sbjct: 114 SDVDKRLDWA-AGIRAEWTMSESGAASTWEHFASVGLEKFEDDHGRADIVAPAAVSTLSP 172 Query: 248 YLSIGVLSPRQCWNRL--KEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFY------- 298 YL G +SPRQ ++ L K+ D + K L+ + W YR A++ Sbjct: 173 YLRHGQISPRQIYHELATKKMGSDGVEGKK------LSRVFWHRLYRREFAYWQLHNWPE 226 Query: 299 -PSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMIT 357 PS + + +E ++ + L W+ G TGFP +DA MR+L GWMH RMI Sbjct: 227 LPSKSVRGHYENRKAWLEGDEAAVALHRWQTGTTGFPTVDAGMRRLWATGWMHQSERMIA 286 Query: 358 ASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFR-IFNPTIQGK 416 A+FLV V W G ++F+ L+D DLA N+ WQ A +G D F P + Sbjct: 287 ATFLVDYCGVHWTHGADWFLDTLVDADLAINSMMWQNAGKSGLDQWDVFAGSLTPDGSSR 346 Query: 417 RFDPQGTFIRHWLPELNNVPTQYI-----HAPHSWLDKNDLSLNYPLP---IVDHKKACH 468 DP+G I W+PEL +P ++ A LD + L P I D + A Sbjct: 347 AHDPEGESIARWIPELAALPKGHLRHRPWEASAKQLDAAGVELGSTYPTRMITDLEGARR 406 Query: 469 HTLNQYYA 476 L+ A Sbjct: 407 RMLDDVNA 414 >gi|88706143|ref|ZP_01103850.1| deoxyribodipyrimidine photolyase [Congregibacter litoralis KT71] gi|88699537|gb|EAQ96649.1| deoxyribodipyrimidine photolyase [Congregibacter litoralis KT71] Length = 488 Score = 117 bits (294), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 127/503 (25%), Positives = 200/503 (39%), Gaps = 68/503 (13%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 +VWL+ DLR+ D+ AL AA S V+ ++ PE + R F++ SL + + Sbjct: 4 VVWLKRDLRLQDHAALEAAL-GSGLPVVLLYCFEPELLKDPHYDERHWRFVWESLRDMHR 62 Query: 71 SLSQKGIVF------------------QYHQCSNFDDS-IEWLDSYCLQQRVTKLFYNRQ 111 L Q H +++++ +E ++ + + LF R Sbjct: 63 RLEAHPRSLRVLHGDPREIFRVLADEEQLHSVYSYEETGLE--KTFARDRELAALFQERS 120 Query: 112 YEINEVRRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQ 171 E + + R + + + + P + +H L + F A + L Sbjct: 121 IPWKEFPSNGVQRGRKNRKGWNRKWTAQMSAPCHDV-DHRL----IRGSF--ACEERLAA 173 Query: 172 ADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYV 231 LR LP R D FQ+ GE A L F + + Y Sbjct: 174 FHLRDLP-------------GSWRSPDNQFQSG------GESEAWQTLNDFLERRSPAYA 214 Query: 232 EQRDIP--AIQGTSQLSPYLSIGVLSPRQCWNRL----KEEFVDLLIKPKSGAFSWLNEL 285 P + S+LSP+L+ G LS RQ + L KE ++ W Sbjct: 215 RNISKPLASRSSCSRLSPFLAWGNLSIRQVYQALRAAQKERGSSRALQAFESRLHWHCHF 274 Query: 286 IWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNT 345 I ++F + + G P + +D L +AW +G TG+P+IDA+MR L Sbjct: 275 I-QKFEMECRMEHEDINRGYLHHPRS------RDDALARAWAEGNTGYPLIDASMRCLAA 327 Query: 346 IGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPY 405 G+++ R R + SFL L DWR+G + S LD + + Q A G + Sbjct: 328 TGYINFRSRAMLVSFLTHHLWQDWRVGAAHLASLFLDFEPGIHFAQLQMQA--GVTGINT 385 Query: 406 FRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDL-----SLNYPLPI 460 RI+NP Q + DP G FIR W+PEL VPT IH P L S Y P+ Sbjct: 386 IRIYNPVKQSEEHDPDGAFIRQWVPELAEVPTPMIHRPWDLSPMEQLIYGLDSKPYAPPV 445 Query: 461 VDHKKACHHTLNQYYAAKKQSLL 483 VD ++ ++ +A K ++ Sbjct: 446 VDVRETYRSARDRLWALKDDPVV 468 >gi|325135093|gb|EGC57721.1| putative deoxyribodipyrimidine photolyase [Neisseria meningitidis M13399] Length = 433 Score = 117 bits (294), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 126/469 (26%), Positives = 190/469 (40%), Gaps = 91/469 (19%) Query: 1 MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHF 60 + A T + LVW R +LRI DN AL AA +I ++I E + R++ F Sbjct: 9 LYADTCAAHTLVWFRQNLRIRDNAALCAAVAEG-LPIIGIWIDDAET-----DNPRRAAF 62 Query: 61 IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120 S ++ + L+ +GI Y S + L ++ + + + + + D Sbjct: 63 YRQSAAELAQGLAGRGIPL-YTAASPAE-----LVRLAVRLNIRTVIADESHTFADKLAD 116 Query: 121 KLLEKRLQHRVICKSF--DDSV-----LLPPGSILNHALQMYK----------------V 157 L L I +F D +V L+P G Y+ + Sbjct: 117 NALWHELDKHGIALTFVNDRAVFGKTDLIPDGGTAYADFDRYREVWLDRFSKQPPAGPDL 176 Query: 158 YTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALH 217 + +R+ +NL S P PA G P N GE A Sbjct: 177 FAAYRQPFPENL------SAPQPAALSDGIFLPQNS-----------------GETAAWR 213 Query: 218 ILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSG 277 R+F ++ Y V +D P+ + TS + YLS G +SPR L E ++ + Sbjct: 214 QWRRFLEQADSYSV-LKDFPSRKHTSLMGAYLSAGCISPRL----LARESLERRLN---- 264 Query: 278 AFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHL-LQAWKQGYTGFPII 336 +W + +I R+F+ L + + + N + L L W+QG TG PII Sbjct: 265 --AWADNIIRRDFFLQLALQHTD----------DDPSDGNPEHTLRLTLWQQGQTGIPII 312 Query: 337 DAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAA 396 DAAMR L+ G +H LR ++A F L + R GE +F QL D D A N G W AA Sbjct: 313 DAAMRCLHKTGSLHPALRRLSADFFCHVLNLPRREGEIWFARQLTDFDAAINQGNWWLAA 372 Query: 397 STGNDSVPYFRIFNPTIQGK--RFDPQGTFIRHWLPELNNVPTQYIHAP 443 S R P I + DP GTF+R +PEL ++ +H P Sbjct: 373 S---------RHTCPDIAAAAHKTDPDGTFVRRHIPELAHLSADTVHTP 412 >gi|119945274|ref|YP_942954.1| deoxyribodipyrimidine photo-lyase [Psychromonas ingrahamii 37] gi|119863878|gb|ABM03355.1| Deoxyribodipyrimidine photo-lyase [Psychromonas ingrahamii 37] Length = 517 Score = 117 bits (293), Expect = 4e-24, Method: Compositional matrix adjust. Identities = 129/495 (26%), Positives = 206/495 (41%), Gaps = 86/495 (17%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVF----IATPEQWRQHGISARQSHFIYAS 64 V++VWL+ DLR++D++ L + + + VF IA P ++H FI+ S Sbjct: 16 VNIVWLKRDLRLSDHQPLSESIQSGLTLLYYVFEPLLIADPHYDKRHW------RFIWQS 69 Query: 65 LLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQR--VTKLFYNRQYEI-NEVRRDK 121 + + LS F F D++ L+ +QQR +T LF + + + + RDK Sbjct: 70 IEDINTQLS----AFNAQIYVYFGDAVAGLNE--IQQRFNITGLFSHEEVGLLSTFERDK 123 Query: 122 LLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPA 181 + K + + I S G++ +RK + L Q PA Sbjct: 124 AVNKWCKAQNIVWHESAS-----GAVTRGKKNRNNWDKDWRKIMKAELCQ--------PA 170 Query: 182 IRLTGPVTPSNIPRF--FDYPFQAIDP---MFPIGEQNALHILRKFC--KEKVYYYVEQR 234 + ++ + R F P P M GE A +L+ F + K Y++ + Sbjct: 171 LSCNTLLSKQCLERLPQFILPVSWSTPDDFMLKGGELWAQKMLQSFLNGRGKNYHFDISK 230 Query: 235 DIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSG----------------- 277 + + S+LSPYL+ G +S RQ + + L+ +P++G Sbjct: 231 PQASRKSCSRLSPYLAWGNISLRQFYQ------IILMKRPQNGWKRPIDALASRLHWHCH 284 Query: 278 ---AFSWLNELIWREFYRHLMAF-YPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGF 333 F +++ WR R F YP + G L WK TG+ Sbjct: 285 FIQKFESEHQMQWRPVNRAYSNFSYPDLHCGLSV------------ETRLNKWKTAQTGY 332 Query: 334 PIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQ 393 P++DA M L G+++ R+R + SFL LL+DWR+G Y LD + + Q Sbjct: 333 PLVDACMLCLIKTGYINFRMRAMLVSFLCHHLLLDWRLGVSYLAKLFLDFEPGIHYP--Q 390 Query: 394 WAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAP------HSWL 447 + +G R++NP Q D G FIR WLP+L+ +P + IH P L Sbjct: 391 FQMQSGVTGTNIIRVYNPVKQSLEKDKDGLFIRTWLPQLSELPNEIIHTPWQLSPMEQQL 450 Query: 448 DKNDLSLNYPLPIVD 462 + L YPLPIVD Sbjct: 451 YQCQLGETYPLPIVD 465 >gi|170059953|ref|XP_001865587.1| cryptochrome-1 [Culex quinquefasciatus] gi|167878532|gb|EDS41915.1| cryptochrome-1 [Culex quinquefasciatus] Length = 789 Score = 117 bits (293), Expect = 4e-24, Method: Compositional matrix adjust. Identities = 127/488 (26%), Positives = 197/488 (40%), Gaps = 76/488 (15%) Query: 8 SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67 +VH W R LR+ DN AL ++ A + VF+ P + + F+ L Sbjct: 52 TVH--WFRKGLRLHDNPALREGLKDA-ASLRCVFVIDPWFAGSSNVGINKWRFLLQCLED 108 Query: 68 VQKSLSQ---KGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLE 124 + ++L Q + V + + + CL F +VR + E Sbjct: 109 LDRNLRQLNSRLFVIRGQPADALPKLFKEWGTTCL------TFEEDPEPFGKVRDHNISE 162 Query: 125 KRLQHRVICKSFDDSVLLPPGSILNHALQMYKVY-----TPFRKALIQNLVQADLRSL-- 177 +CK + V+ S ++H L YK+ R L N QA + S+ Sbjct: 163 -------MCKELNIDVI----SAVSHTL--YKLERIIEKNNGRAPLTYNQFQAIIASMDA 209 Query: 178 ---PVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQR 234 P PAI L + + P+ D+ D + + L + K ++ E Sbjct: 210 PPQPEPAITLAA-IGRAVTPQCDDH-----DDKYGVPTLEELGFETEGLKPPIWVGGE-- 261 Query: 235 DIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHL 294 + ++L +L R+ W IK S +L WREF+ Sbjct: 262 ----TEALARLERHLE------RKAWK----------IKKAYPPLSLHGQLFWREFFYCA 301 Query: 295 MAFYPSV--CMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNR 352 P+ G P +I W++++ L W G TGFP IDA M QL GW+H+ Sbjct: 302 ATKNPNFDKMAGNPIC---VQIPWDRNAEALAKWASGQTGFPWIDAIMTQLREEGWIHHL 358 Query: 353 LRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNP 411 R A FL + DL + W G + F LLD D + N G W W S + +F + P Sbjct: 359 ARHAVACFLTRGDLWISWEEGMKVFEELLLDADWSVNAGMWMW-LSCSSFFQQFFHCYCP 417 Query: 412 TIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLD------KNDLSLNYPLPIVDHKK 465 G++ DP G +IR +LP L N PT+YIH P + + + + NYPLP+V+H Sbjct: 418 VKFGRKADPNGDYIRRYLPVLKNFPTRYIHEPWNAPESVQRAARCIIGKNYPLPMVNHAI 477 Query: 466 ACHHTLNQ 473 A + + Sbjct: 478 ASRANMER 485 >gi|218709609|ref|YP_002417230.1| deoxyribodipyrimidine photolyase [Vibrio splendidus LGP32] gi|218322628|emb|CAV18793.1| deoxyribodipyrimidine photolyase [Vibrio splendidus LGP32] Length = 470 Score = 117 bits (293), Expect = 4e-24, Method: Compositional matrix adjust. Identities = 131/469 (27%), Positives = 206/469 (43%), Gaps = 67/469 (14%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAV-------FIATPEQWRQHGISARQSHFI 61 + L +DLRI DN+ L+ A + D + + F A Q + +G A + F+ Sbjct: 4 IGLYLFTSDLRINDNQLLHCAAQSVDKLIFVIVEPTLVRFSADLAQEQSYG--AHRQTFV 61 Query: 62 YASLLQVQKSLS-----QKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINE 116 S+ ++ +L+ Q+ +V + D + + L Q VT F N +E Sbjct: 62 SQSIDNLELNLNLVRLGQQLVVIHSNHLEP-DAAEQTLSQIIATQHVTHFFANAHCGYDE 120 Query: 117 VRRDKLLEKRLQHRVICKSFDDSVLLPPGSIL--NHAL--QMYKV---YTPFRKALIQNL 169 + L+ R + C LP S L +H + ++ KV +T FRK L+++L Sbjct: 121 RQLIHSLQSRHPDLITC--------LPHHSTLFDSHEMPFELSKVPSSFTKFRK-LVEHL 171 Query: 170 ----VQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQ-AIDPMFPIGEQNAL-HILRKFC 223 + + LP P P + IP F + A+ + GE L H+ F Sbjct: 172 DVNGGETVIAHLPPPVTPTLTPAHTTAIPIFSSPNVERAVTNDYLGGEDAGLAHLDNYFA 231 Query: 224 KEKVYYYVEQRD-IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWL 282 + Y + R+ I+ +++ SP+L++G +SP+ LK+ ++ + + W+ Sbjct: 232 HDYALNYKQTRNAFDGIENSTKFSPWLALGCVSPKTICRHLKQFEIE---HGSNDSTYWI 288 Query: 283 N-ELIWRE-FYRHLMAFYPSVCMG---KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIID 337 EL+WRE FY ++ PS+ K P N + WK G T +PI+D Sbjct: 289 YFELLWREYFYWKCLSQGPSLFGNFSDKKLYPPNSSGTSNLN---FAKWKSGNTNYPIVD 345 Query: 338 AAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAAS 397 A MRQLN G+M NR R + AS L+ +L +DWR G YF SQL+D D+ASN G W + A Sbjct: 346 ACMRQLNETGYMSNRGRQLAASCLIYELGIDWRHGAAYFESQLIDYDVASNWGNWAYIAG 405 Query: 398 TGNDSV------------------PYFRIFNPTIQGKRFDPQGTFIRHW 428 N V P R F+ Q +DP FI W Sbjct: 406 ALNSQVNTQDNKQNDAKQPKPKTKPKSRHFDLGKQTNMYDPDHAFINKW 454 >gi|254515582|ref|ZP_05127642.1| deoxyribodipyrimidine photolyase [gamma proteobacterium NOR5-3] gi|219675304|gb|EED31670.1| deoxyribodipyrimidine photolyase [gamma proteobacterium NOR5-3] Length = 488 Score = 117 bits (293), Expect = 4e-24, Method: Compositional matrix adjust. Identities = 129/491 (26%), Positives = 200/491 (40%), Gaps = 44/491 (8%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 LVWL+ DLR+ D+ L AA + + + ++ PE S R F++ SL +++ Sbjct: 4 LVWLKRDLRLQDHAPLRAAI-AAGSSTLLLYCFEPELLSDPHYSDRHWRFVWQSLEDMRR 62 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLF-YNRQYEINEVRRDKLLEKRLQH 129 SL + H C D E ++ +++ Y RD+ + LQ Sbjct: 63 SLGPQASAL--HVC--LGDPREIFARLLQDGQLQRVYSYEETGLAKTFARDRDVAAMLQS 118 Query: 130 RVICKSFDDSVLLPPGSILNHALQM---YKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 I S + G ++ TP Q + + A LT Sbjct: 119 HGIPWEEFPSNGVQRGRCNRKGWNRDWGRQMNTPCDTTNPQEIYSNAAAGSTLKAFHLTD 178 Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIP--AIQGTSQ 244 P P+ + + GE A LR F + +V Y P + + S+ Sbjct: 179 P------PQSWTASHKDFQTG---GESTARRTLRDFLERRVSGYARNISKPLASRESCSR 229 Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304 LSPYL+ G LS RQ + L E P ++ + L W + H + + C Sbjct: 230 LSPYLAWGNLSIRQVYQALGE--AQNRGGPSRALQAFESRLHW---HCHFIQKFEMECRM 284 Query: 305 KPFIPWTEKIEWNKDSH-------LLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMIT 357 + E I +H ++AW QG TG+P+IDA+MR L G+++ R R + Sbjct: 285 E-----HEDINRGYLAHPRAFCEDRVRAWAQGNTGYPLIDASMRCLAATGYINFRSRAML 339 Query: 358 ASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKR 417 SFL L DWR+G + LD + + Q A G + RI+NP Q + Sbjct: 340 VSFLTHHLWQDWRVGAAHLAGLFLDFEPGIHFAQLQMQA--GVTGINTIRIYNPVKQSEE 397 Query: 418 FDPQGTFIRHWLPELNNVPTQYIHAP--HSWLDKNDLSLN---YPLPIVDHKKACHHTLN 472 DP G FIR W+PEL VP IH P S +++ L+ Y PIVD + + Sbjct: 398 HDPDGVFIRQWVPELAEVPAPMIHRPWDLSPMEQIIYGLDTKAYSPPIVDVSETYRSARD 457 Query: 473 QYYAAKKQSLL 483 + +A K S++ Sbjct: 458 RLWALKDDSVV 468 >gi|261391823|emb|CAX49280.1| deoxyribodopyrimidine photo-lyase (DNA photolyase; photoreactivating enzyme) [Neisseria meningitidis 8013] Length = 433 Score = 117 bits (293), Expect = 5e-24, Method: Compositional matrix adjust. Identities = 124/469 (26%), Positives = 188/469 (40%), Gaps = 91/469 (19%) Query: 1 MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHF 60 + A T + LVW R +LRI DN AL A +I ++I E + R++ F Sbjct: 9 LYADTCAAHTLVWFRQNLRIRDNAALCTAVAEG-LPIIGIWIDDAET-----DNPRRAAF 62 Query: 61 IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120 S ++ + L+ +GI S L ++ + + + + + D Sbjct: 63 YRQSAAELAQGLAGRGIPLYTAA------SPAGLVRLAVRLNIRAVIADESHTFADKLAD 116 Query: 121 KLLEKRLQHRVICKSF--DDSV-----LLPPGSILNHALQMYK----------------V 157 L L I +F D +V L+P G Y+ + Sbjct: 117 NALWHELDKHGIALTFVNDRAVFGKTDLIPDGGTAYADFDRYREVWLDRFSKQPPAGPDL 176 Query: 158 YTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALH 217 + +R+ +NL S P PA G P N GE A Sbjct: 177 FAAYRQPFPENL------SAPPPAALSDGIFLPQNS-----------------GETAAWR 213 Query: 218 ILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSG 277 R+F ++ Y V +D P+ + TS + YLS G +SPR L E ++ + Sbjct: 214 QWRRFLEQADSYSV-LKDFPSRKHTSLMGAYLSAGCISPRL----LARESLERRLN---- 264 Query: 278 AFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHL-LQAWKQGYTGFPII 336 +W + +I R+F+ L + + + N + L L W+QG TG PII Sbjct: 265 --AWADNIIRRDFFLQLALQHTD----------DDPSDGNPEHTLRLTLWQQGRTGIPII 312 Query: 337 DAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAA 396 DAAMR L+ G +H LR ++A F L + R GE +F QL D D A N G W+ AA Sbjct: 313 DAAMRCLHKTGSLHPALRRLSADFFCHVLNLPRREGEIWFARQLTDFDAAINQGNWRLAA 372 Query: 397 STGNDSVPYFRIFNPTIQGK--RFDPQGTFIRHWLPELNNVPTQYIHAP 443 S R P I + DP GTF+R +PEL ++ +H P Sbjct: 373 S---------RHTCPDIAAAAHKTDPDGTFVRRHIPELAHLSADTVHTP 412 >gi|149202359|ref|ZP_01879332.1| Deoxyribodipyrimidine photolyase [Roseovarius sp. TM1035] gi|149144457|gb|EDM32488.1| Deoxyribodipyrimidine photolyase [Roseovarius sp. TM1035] Length = 496 Score = 117 bits (292), Expect = 5e-24, Method: Compositional matrix adjust. Identities = 118/504 (23%), Positives = 185/504 (36%), Gaps = 85/504 (16%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 ++W + DLR+ D+ AL A ++ ++I P W + S RQ FI L +++ Sbjct: 6 ILWFKRDLRVQDHPALTHAARLG--PILPLYIVEPGLWAEPDASGRQYAFICECLESLRE 63 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLF----------YNRQYEINEVRRD 120 L+ G+ D++ L+ V L + R + E R Sbjct: 64 DLAGLGLTL----VVRVGDAVTVLEDLRAAHAVVHLVSHEETGNLWSFGRDRRVAEWARG 119 Query: 121 KLLE----------KRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLV 170 + + +RL R + D V+ P V P + Sbjct: 120 QGVRWEEMPQSGVVRRLGSRDAWQGARDRVMRAP------------VLGPVQ-------- 159 Query: 171 QADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNA-LHILRKFCKEKVYY 229 +R L V + L P T + P+ G + A + L+ F + Sbjct: 160 --GVRGLAVASDDLPAPAT---------LGLKDACPLRQKGGRGAGMRALQSFLSTRGES 208 Query: 230 YVEQRDIP--AIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLN---- 283 Y P + S++SP+L+ G LS L+E + P W Sbjct: 209 YQRAMSSPLHGARACSRISPHLAFGTLS-------LREAVQTGAMAPGGRGADWARSMRS 261 Query: 284 ---ELIWREFYRHLMAFYPSV---CMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIID 337 L WR+ + + P + C+ + + D+ L AW G TG P +D Sbjct: 262 FQARLAWRDHFMQKLEDEPEIERRCLHPAYEGLRPR---EADALRLAAWSTGETGLPFVD 318 Query: 338 AAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGW-QWAA 396 A MR L GW++ R+R + + L +DWR D + + W Q Sbjct: 319 ACMRSLLATGWLNFRMRSMLMAVASYHLWLDWRSTGPVLAQAFTDYEPGIH---WPQVQM 375 Query: 397 STGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND-LSLN 455 +G + RI+NP QG DP G F R WLPEL VP Y+ P W + L Sbjct: 376 QSGTTGMNTIRIYNPVKQGLDQDPTGEFTRRWLPELAQVPDAYLQRPWDWPEAERLLERG 435 Query: 456 YPLPIVDHKKACHHTLNQYYAAKK 479 YP PIVD +A +A ++ Sbjct: 436 YPAPIVDPVEAARVAREAVWACRR 459 >gi|254506555|ref|ZP_05118696.1| FAD binding domain of DNA photolyase protein [Vibrio parahaemolyticus 16] gi|219550428|gb|EED27412.1| FAD binding domain of DNA photolyase protein [Vibrio parahaemolyticus 16] Length = 492 Score = 117 bits (292), Expect = 6e-24, Method: Compositional matrix adjust. Identities = 118/449 (26%), Positives = 203/449 (45%), Gaps = 38/449 (8%) Query: 8 SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67 S++LVWL+ DLR+TD++ L+ A + + ++I P S R F+ SL Sbjct: 3 SINLVWLKRDLRLTDHQPLHDAIQDGTPFAL-IYIFEPLLLNDPHFSDRHWRFVLQSLDD 61 Query: 68 VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEV-RRDKLLEKR 126 + ++L+ G F D+ + +S + K+F +++ +N RDK L Sbjct: 62 INETLTPFGTSVHI----LFGDATQCFESLAHHYSIGKVFSHQEIGLNNTFERDKRLAAW 117 Query: 127 LQHRVICKSFDDSVLLPPGSILNHA---LQMYKVYTPFRKALIQNLVQADLRSLPVPAIR 183 I + +S G++L A Q + + F +A + + R + + I Sbjct: 118 FTSNGI--QWHES---QHGAVLRGAKTRQQWDERWHTFMRAPLADPQLDHARWVNLEGIE 172 Query: 184 LTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ--G 241 +P ++ +A + M G Q A L F + + Y + P++ Sbjct: 173 PHMRFSPP-----LEWQGKA-NGMQTGGSQLAWKTLDDFFRRRGKDYYRRISSPSLSRSA 226 Query: 242 TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSV 301 +++SPYL+ G +S R+ + L + + L K A + + L W + H M + S Sbjct: 227 CTRISPYLAWGNVSLREVYQYLLQHWQ--LKGFKRSAIALSSRLHW---HCHFMQKFESE 281 Query: 302 ------CMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRM 355 C+ + + P + KD +L+AWK G TG P++DA MR L+ G+++ R+R Sbjct: 282 VEMEFRCLNRGYEPLIVQST-RKDEMMLKAWKTGTTGLPLVDACMRCLHHTGYLNFRMRA 340 Query: 356 ITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAAS-TGNDSVPYFRIFNPTIQ 414 + S L + DWR G + LD + + +Q A TG ++V RI+NPT Q Sbjct: 341 MLVSVLCHHMNQDWRDGVTHLAQLFLDFEPGIHYPQFQMQAGVTGINTV---RIYNPTKQ 397 Query: 415 GKRFDPQGTFIRHWLPELNNVPTQYIHAP 443 + DP G FI+ WLPEL +P + P Sbjct: 398 AQEHDPDGHFIKKWLPELAALPAPLLFEP 426 >gi|113953044|ref|YP_731210.1| deoxyribodipyrimidine photolyase family protein [Synechococcus sp. CC9311] gi|113880395|gb|ABI45353.1| deoxyribodipyrimidine photolyase family protein [Synechococcus sp. CC9311] Length = 504 Score = 117 bits (292), Expect = 6e-24, Method: Compositional matrix adjust. Identities = 126/495 (25%), Positives = 205/495 (41%), Gaps = 57/495 (11%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M++ LVW + DLR+ D+K L A V+ +++ PE W+Q S RQ F SLL Sbjct: 1 MALQLVWFKRDLRVKDHKPLQQALLR--GPVLPLYVVEPELWQQQDASERQWLFCRESLL 58 Query: 67 QV--------QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVR 118 + Q L + G V + + ++ +E L S+ ++ Y R + Sbjct: 59 DLRLALAALGQPLLVRSGDVVEVFERAHRQFGLEALWSH--EETGNGWTYQRDQRVALWC 116 Query: 119 RDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLP 178 R QH + K +P ++ + + + + + + L Sbjct: 117 R--------QHGIAWKE------IPQFGVIRRLRSRTRWAKRWEAQMAEPITPS---PLG 159 Query: 179 VPAIRLTGPVTPSNIPRFFDYPFQAIDPM---FPIGEQNALHILRKFCKEKVYYYVEQRD 235 +P+I + P +P A DP G AL L F + + Y Sbjct: 160 LPSIEGIDAGVIPDCP----HPTLASDPCPHRQSGGRSMALLELDDFLEHRAPGYARSIS 215 Query: 236 IP--AIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRH 293 P A G S+LS YL+ G LS ++E G S+ + L W + Sbjct: 216 SPNTAFTGCSRLSAYLTWGCLS-------MREVIQTSRGFSGRGISSFESRLHWHCHFIQ 268 Query: 294 LMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRL 353 + PS+ + F P+ + D LL AW +G TG P +DA MR L GW++ R+ Sbjct: 269 KLEAQPSIEF-EDFHPFMRGLRCTNDQRLL-AWAEGRTGVPFVDACMRALRAHGWINFRM 326 Query: 354 RMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGW-QWAASTGNDSVPYFRIFNPT 412 R + SF L + WR + Q +D + + W Q +G+ ++ R++NP Sbjct: 327 RAMLMSFASYHLWLPWRDSGLHLARQFVDYEPGIH---WSQCQMQSGSTAINTVRVYNPI 383 Query: 413 IQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKN------DLSLNYPLPIVDHKKA 466 QG+ D G FIR W+PEL+ V Y+H P L ++YPLP+V+ A Sbjct: 384 KQGQDHDLNGEFIRTWVPELHLVSNVYVHEPWKLSTAAQRQAGLQLGVDYPLPMVEPALA 443 Query: 467 CHHTLNQYYAAKKQS 481 + +A +++S Sbjct: 444 AREAKQRIWAIRERS 458 >gi|325137115|gb|EGC59711.1| putative deoxyribodipyrimidine photolyase [Neisseria meningitidis M0579] Length = 433 Score = 117 bits (292), Expect = 6e-24, Method: Compositional matrix adjust. Identities = 126/469 (26%), Positives = 190/469 (40%), Gaps = 91/469 (19%) Query: 1 MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHF 60 + A T + LVW R +LRI DN AL A VI ++I E + R++ F Sbjct: 9 LYADTCAAHTLVWFRQNLRIRDNAALCTAVAEG-LPVIGIWIDDAET-----DNPRRAAF 62 Query: 61 IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120 S ++ + L+ +GI Y S + L ++ + + + + + D Sbjct: 63 YRQSAAELAQGLAGRGIPL-YTAASPAE-----LVRLAVRLNIRAVIADESHTFADKLAD 116 Query: 121 KLLEKRLQHRVICKSF--DDSV-----LLPPGSILNHALQMYK----------------V 157 L L I +F D +V L+P G Y+ + Sbjct: 117 NALWHELDKHGIALTFVNDRAVFGKTDLIPDGGTAYADFDRYREVWLDRFSKQPPAGPDL 176 Query: 158 YTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALH 217 + +R+ +NL S P PA G P N GE A Sbjct: 177 FAAYRQPFPENL------SAPQPAALSDGIFLPQNG-----------------GETAAWR 213 Query: 218 ILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSG 277 R+F ++ Y V +D P+ + TS + YLS G +S R L E ++ + Sbjct: 214 QWRRFLEQADSYSV-LKDFPSRKNTSLMGAYLSAGCISSRL----LARESLERRLN---- 264 Query: 278 AFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHL-LQAWKQGYTGFPII 336 +W + +I R+F+ L + + + N + L L W+QG TG PII Sbjct: 265 --AWADNIIRRDFFLQLALQHAD----------DDPSDGNPEHTLRLTLWQQGQTGIPII 312 Query: 337 DAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAA 396 DAAMR L+ G +H LR ++A F L + R GE +F QL D D+A N G W+ AA Sbjct: 313 DAAMRCLHKTGGLHPALRRLSADFFCHVLNLPRREGEIWFARQLTDFDVAINQGNWRLAA 372 Query: 397 STGNDSVPYFRIFNPTIQGK--RFDPQGTFIRHWLPELNNVPTQYIHAP 443 S R P I R DP GTFI+ +PEL ++ +H P Sbjct: 373 S---------RHTYPDIAAASYRTDPDGTFIKRHIPELAHLSADTVHTP 412 >gi|325518601|gb|EGC98260.1| deoxyribodipyrimidine photolyase [Burkholderia sp. TJI49] Length = 111 Score = 117 bits (292), Expect = 6e-24, Method: Composition-based stats. Identities = 49/89 (55%), Positives = 60/89 (67%) Query: 355 MITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQ 414 M+ ASFL K LL+DWR GE +F L+D D A+N WQW A G D+ PYFRIFNP Q Sbjct: 1 MVVASFLAKHLLIDWRAGEAWFRDTLVDADPANNAASWQWVAGCGVDAAPYFRIFNPVAQ 60 Query: 415 GKRFDPQGTFIRHWLPELNNVPTQYIHAP 443 G+RFDP G ++R W+PEL + IHAP Sbjct: 61 GRRFDPHGAYVRRWVPELAGLDDAAIHAP 89 >gi|114561960|ref|YP_749473.1| deoxyribodipyrimidine photo-lyase [Shewanella frigidimarina NCIMB 400] gi|114333253|gb|ABI70635.1| Deoxyribodipyrimidine photo-lyase type I [Shewanella frigidimarina NCIMB 400] Length = 504 Score = 116 bits (291), Expect = 6e-24, Method: Compositional matrix adjust. Identities = 125/500 (25%), Positives = 217/500 (43%), Gaps = 44/500 (8%) Query: 1 MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHF 60 M T ++++VW + DLR++D++ L A N D + ++ P + R F Sbjct: 1 MPDTIKQAINIVWFKRDLRLSDHQPLVDA-FNHDLPCLLIYTFEPFMLADSHYNERHWRF 59 Query: 61 IYASLLQV-QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEI-NEVR 118 ++ SL + Q+ L G V+ + I+ LD + ++ +++ + N Sbjct: 60 VWQSLQDMNQQLLRFNGQVYMFSM-----PMIDLLDEISQTFEIKNIYSHQEIGLHNSFE 114 Query: 119 RDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLP 178 RDK + + + + S+ S P G+++ R+A Q+ Q + Sbjct: 115 RDKTVARWCNQQPV--SWQQS---PTGAVVRGRKN--------RQAWDQHWQQVMNSPIA 161 Query: 179 VPAIRLTGPVTPSNIPR-FFDYPFQAIDPMFPIGEQNALH-ILRKFCKEKVYYYVEQRDI 236 +P + N D A + F IG A IL F + Y Sbjct: 162 IPNWQQCQLQKLDNYQEPTLDNAIMAHNDQFQIGGPKAARTILSSFLTHRGKDYQRSISS 221 Query: 237 PAIQGT--SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHL 294 P++ T S+LSPYL+ G +S +Q + + ++ K+ L + ++ H Sbjct: 222 PSLSRTHCSRLSPYLAWGNISLKQVYQATLTRYNEVQTSNKAWRKPLLAMMSRLHWHCHF 281 Query: 295 MAFYPSVCMGK--PFIPWTEKIEWNKDSHL---LQAWKQGYTGFPIIDAAMRQLNTIGWM 349 M + S C + P P + D + +Q W G TG PIIDA MR L G++ Sbjct: 282 MQKFESQCSMEFTPVNPGYVDYPYRTDDKVQQDIQRWADGQTGIPIIDACMRCLKETGYI 341 Query: 350 HNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAAS-TGNDSVPYFRI 408 + R+R + SF+ L + W+ + LD + + Q AS TG +++ R+ Sbjct: 342 NFRMRAMLVSFVTHHLNIAWQHASLPLANYFLDFEPGIHYPQLQMQASVTGINTI---RL 398 Query: 409 FNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDK------NDLSL--NYPLPI 460 +NP Q + DP+G FIR W PEL N+P +YIH P W ND+ L +YP P+ Sbjct: 399 YNPVKQSQDQDPRGEFIRLWCPELTNLPNEYIHQP--WQQPPMEAIFNDIILGRDYPEPM 456 Query: 461 VDHKKACHHTLNQYYAAKKQ 480 +D +A ++ ++ ++Q Sbjct: 457 IDLTQASQTARDRLWSYREQ 476 >gi|323493058|ref|ZP_08098192.1| deoxyribodipyrimidine photolyase [Vibrio brasiliensis LMG 20546] gi|323312706|gb|EGA65836.1| deoxyribodipyrimidine photolyase [Vibrio brasiliensis LMG 20546] Length = 449 Score = 116 bits (291), Expect = 7e-24, Method: Compositional matrix adjust. Identities = 123/460 (26%), Positives = 184/460 (40%), Gaps = 71/460 (15%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKV-------IAVFIATPEQWRQHGISARQSHFI 61 + L W NDLR+ DN L A D + ++ ++A Q Q S + F+ Sbjct: 5 IGLYWFTNDLRVHDNPLLSKAAAEVDQLICLYCYPSVSPYLARYSQ--QAKWSEPKLQFL 62 Query: 62 YASLLQVQKSLSQ----------------KGIVFQYHQCSNFDDSIEWLDSYCLQQRVTK 105 ASL + SL+ K +V+ + D++ D + + Sbjct: 63 DASLHCLNLSLNALNQRLLVVDSHPYHAIKDLVYGLGVSHLYVDAVAGCDEQSIIDSLKA 122 Query: 106 LFYNRQYEINEVRRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKAL 165 F EVR LE+ F+ S L P + Q+ + P + Sbjct: 123 EFDALDVAQKEVRTLFTLEQL--------PFELSAL--PDTFTQFRKQVEPLVVPLPISW 172 Query: 166 IQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNAL-HILRKFCK 224 ++ L +L +P I LT +F GEQ L H R F Sbjct: 173 VKRLPSLP-DTLSLPGISLT---------------HHGGSALFEGGEQAGLAHCRRYFSS 216 Query: 225 EKVYYYVEQRD-IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLN 283 Y E R+ + + +++ SP+L+ G LS + + LK + L + Sbjct: 217 ACPSEYKETRNALDGLDYSTKFSPWLAHGCLSAKTIYAMLKR--YERLNGANESTYWIYF 274 Query: 284 ELIWREF-------YRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPII 336 EL+WRE+ YR + + + P + +H Q WK G T F I+ Sbjct: 275 ELLWREYFYWYARRYRQKLFRFGGIRNQPPLTSFY--------AHRFQQWKNGQTPFAIV 326 Query: 337 DAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAA 396 +A M QLN G+M NR R + AS L+ +L +DWR G YF SQL+D D+ASN G WQ+ A Sbjct: 327 NACMHQLNQTGYMSNRGRQLVASCLIHELGLDWRYGAAYFESQLIDYDVASNWGNWQYLA 386 Query: 397 STGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVP 436 G D R FN Q + +DP FI W + P Sbjct: 387 GVGADPRGS-RQFNLEKQTQMYDPYQEFIDRWQGRCDASP 425 >gi|309378182|emb|CBX23190.1| unnamed protein product [Neisseria lactamica Y92-1009] Length = 433 Score = 116 bits (291), Expect = 8e-24, Method: Compositional matrix adjust. Identities = 120/468 (25%), Positives = 189/468 (40%), Gaps = 89/468 (19%) Query: 1 MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHF 60 + A T + LVW R +LRI DN AL AA + +I + I E + R++ F Sbjct: 9 LYADTRAAHTLVWFRQNLRIRDNAALCAAVAEG-SPIIGIRIDDAETG-----NPRRTAF 62 Query: 61 IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120 S ++ + L+ +GI S L ++ + + + + + D Sbjct: 63 YRQSAAELAQVLAGRGIPLYTAA------SPAGLVRLAVRLNIRTVIADESHTFADKLAD 116 Query: 121 KLLEKRLQHRVICKSF-------DDSVLLPPGSILNHALQMYK----------------V 157 L L I +F D++ L+P + Y+ + Sbjct: 117 NALWHELDKHGITLTFVNDRSVFDNTDLIPDNGTAHTDFNRYREVWLDRFSKHPPADSDI 176 Query: 158 YTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALH 217 ++ +R+ +NL P PA G P N GE A Sbjct: 177 FSTYRQPFPENL------PAPPPAAFSDGIFLPQNG-----------------GETAAWR 213 Query: 218 ILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSG 277 R+F ++ Y V +D P+ + TS + YLS G +SPR L E ++ + Sbjct: 214 QWRRFIEQADSYSV-LKDFPSRKNTSLMGAYLSAGCISPRL----LARESLERRLN---- 264 Query: 278 AFSWLNELIWREFYRHLMAFYP--SVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPI 335 +W + +I R+F+ L + + G P + + L W+QG TG PI Sbjct: 265 --AWTDNIIRRDFFLQLALQHADDAPADGNP-----------EHTLRLTLWQQGRTGIPI 311 Query: 336 IDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWA 395 IDA+MR L+ G +H L+ ++A F L + R GE +F QL D D A N G W+ A Sbjct: 312 IDASMRCLHKTGSLHPALKRLSADFFCHVLNLPRREGEIWFARQLTDFDAAINQGNWRLA 371 Query: 396 ASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAP 443 +S Y I + DP GTF+R +PEL ++P IH P Sbjct: 372 SSQHT----YPDI---AAAAHKTDPDGTFVRRHIPELAHLPAAVIHTP 412 >gi|313669234|ref|YP_004049518.1| deoxyribodopyrimidine photolyase [Neisseria lactamica ST-640] gi|313006696|emb|CBN88164.1| deoxyribodopyrimidine photolyase [Neisseria lactamica 020-06] Length = 433 Score = 116 bits (291), Expect = 8e-24, Method: Compositional matrix adjust. Identities = 126/470 (26%), Positives = 188/470 (40%), Gaps = 93/470 (19%) Query: 1 MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHF 60 + A T + LVW R +LRI DN AL AA +I ++I E + R++ F Sbjct: 9 LYADTRAAHTLVWFRQNLRIRDNAALCAAVAEG-LPIIGIWIDDAETG-----NPRRTAF 62 Query: 61 IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120 S ++ + L+ +GI S L ++ + + + + + D Sbjct: 63 YRQSAAELAQVLAGRGIPLYTAA------SPAGLVRLAVRLNIRAVIADESHTFADKLAD 116 Query: 121 KLLEKRLQHRVICKSF--DDSV-----LLPPGSILNHALQMYK----------------V 157 L L I +F D +V L+P G Y+ + Sbjct: 117 NALWHELDKHGIALTFVNDRAVFGKTDLIPDGGTAYADFDRYREVWLDRFSKQPPAGSDL 176 Query: 158 YTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALH 217 + +R+ +NL S P PA G P N GE A Sbjct: 177 FAAYRQPFPENL------STPPPAAFSDGIFLPQNG-----------------GETAAWR 213 Query: 218 ILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSG 277 R+F ++ Y V +D P+ + TS + YLS G +SPR L E ++ + Sbjct: 214 QWRRFLEQADSYSV-LKDFPSRKNTSLMGAYLSAGCISPRL----LARESLERRLN---- 264 Query: 278 AFSWLNELIWREFYRHLMAFYP--SVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPI 335 +W + +I R+F+ L + G P + + L W+QG TG PI Sbjct: 265 --AWADNIIRRDFFLQLALQHADDGPSDGNP-----------EHTLRLTLWQQGRTGIPI 311 Query: 336 IDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWA 395 IDAAMR L+ G +H L ++A F L + R GE +F QL D D A N G W+ A Sbjct: 312 IDAAMRCLHKTGSLHPALIRLSADFFCHVLNLPRREGEIWFARQLTDFDAAINQGNWRLA 371 Query: 396 ASTGNDSVPYFRIFNPTIQGK--RFDPQGTFIRHWLPELNNVPTQYIHAP 443 AS R P I + DP GTF+R +PEL ++P IH P Sbjct: 372 AS---------RHTYPDIAAAAHKTDPDGTFVRRHIPELAHLPAAVIHTP 412 >gi|255020504|ref|ZP_05292568.1| Deoxyribodipyrimidine photolyase [Acidithiobacillus caldus ATCC 51756] gi|254970024|gb|EET27522.1| Deoxyribodipyrimidine photolyase [Acidithiobacillus caldus ATCC 51756] Length = 493 Score = 116 bits (290), Expect = 9e-24, Method: Compositional matrix adjust. Identities = 126/507 (24%), Positives = 202/507 (39%), Gaps = 101/507 (19%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAV----FIATPEQWRQHGISARQSHFIYASLL 66 LVW + DLR TD+ L AA A + V ++ PE QH FI SLL Sbjct: 6 LVWFKRDLRCTDHAPLAAAARCRSAVGLYVLEDEWLGAPEWDPQHW------EFIRQSLL 59 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 +++ +L+ +G+ L++ L + ++ RD + Sbjct: 60 ELRDNLAARGMPL------------------LLRRGAMPLV------LAQLWRDYPFTEL 95 Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQAD---------LRSL 177 L H ++ + + ++ + F +++ L Q D + Sbjct: 96 LSHEETGSAWTYARDRRVAAWCRERGIAWRQWPQF--GVVRPLAQRDGWAEAWERFMARP 153 Query: 178 PVPAI-RLTGPVTP---SNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQ 233 P+ A+ +L G TP +IP A P+ P GE A L F E+ Y+ Sbjct: 154 PLAAVGQLPGTTTPLDGGDIPSLDALGLPAARPIPPAGEAAATRTLESFIAERGSRYLHT 213 Query: 234 RDIP--AIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFY 291 P A +G S+LS +L+ G +S RQ R ++ +L + + A E Sbjct: 214 LSSPLLAERGCSRLSAHLAYGTVSMRQVVQRTRQRLRELRKEGSAEAG---------ERA 264 Query: 292 RHLMAFYPSVCMGKPFI------PWTE------------KIEWNKDSHLLQAWKQGYTGF 333 RHL F + FI P +E + +W+++ L AW +G TGF Sbjct: 265 RHLRGFLSRLHWHCHFIQKLEDEPASEFHNFSRSYDGLREDDWSEERFL--AWAEGRTGF 322 Query: 334 PIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQ 393 P +DA MR L GW++ R+R + SF L + WR + Q LD + + Q Sbjct: 323 PFVDACMRCLRATGWINFRMRAMLVSFASYHLWLHWRGTGLFLARQFLDFEPGIHWS--Q 380 Query: 394 WAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLS 453 +G + RI++P Q DP+G F+R WLPE S Sbjct: 381 MQMQSGTTGINTLRIYSPNKQWADQDPRGEFVRRWLPEWG-------------------S 421 Query: 454 LNYPLPIVDHKKACHHTLNQYYAAKKQ 480 +YP PIVD ++A + +A ++Q Sbjct: 422 PDYPPPIVDEQRAARIAKERIWARRRQ 448 >gi|332292002|ref|YP_004430611.1| DNA photolyase FAD-binding protein [Krokinobacter diaphorus 4H-3-7-5] gi|332170088|gb|AEE19343.1| DNA photolyase FAD-binding protein [Krokinobacter diaphorus 4H-3-7-5] Length = 510 Score = 116 bits (290), Expect = 9e-24, Method: Compositional matrix adjust. Identities = 126/499 (25%), Positives = 214/499 (42%), Gaps = 46/499 (9%) Query: 8 SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67 V++VW + DLR+ D+ LY A ++ ++I P S R +FI SLL Sbjct: 15 EVNIVWFKRDLRLHDHLPLYNALQEGQP-LLLLYILEPSLEVDPHYSDRHFNFIKESLLN 73 Query: 68 VQKSL---SQKGIVFQYHQCSNFDDSIEWLDSYCL---QQRVTKLFYNRQYEINEVRRDK 121 +QK L + K ++ S F + I+ + + Q+ ++ Y+R + E + Sbjct: 74 LQKELKAFNTKILIIHDEVVSAFKELIKHYKIHTVFSHQETGLRVTYDRDLAL-EAYANN 132 Query: 122 LLEKRLQHRVICKSFDDSVLLPP-----GSILNHALQMYKVYTPFRKALIQNLVQADLRS 176 L +++ F ++ + G + M + PF+ Q L D+ + Sbjct: 133 LKIASPENKFGWVEFANNGVQRKLRNRVGWSEDWEWFMKQPQIPFQPKKNQLLSIEDINA 192 Query: 177 LPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYY-YVEQRD 235 L +++ + S+ PFQ G A+ L F + Y Y + Sbjct: 193 LEDNFKKVSLQTSASS-------PFQKG------GTTMAMRYLTSFLHDNRYLNYAKHIS 239 Query: 236 IPAI--QGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRH 293 P++ + S+LSPY++ G +S RQ + K K K + + L W+ + Sbjct: 240 KPSLARKSCSRLSPYIAWGNVSIRQVYQEAKH--FRESSKNKRAIDGFTSRLRWQAHFIQ 297 Query: 294 LMAFYPS---VCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMH 350 S V + K + K+ N + +AWK+G TG+P++DA MR L G+++ Sbjct: 298 KFEMEDSMEFVSVNKGY----HKLSKNVNVKYQKAWKEGKTGYPLVDACMRCLCETGYLN 353 Query: 351 NRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFN 410 R+R +T SF +L W+ + Q LD + + Q A G + RI+N Sbjct: 354 FRMRAMTLSFFTHNLWQPWQDATYHLAQQFLDFEPGIHYPQIQMQA--GETGINMLRIYN 411 Query: 411 PTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAP--HSWLDK----NDLSLNYPLPIVDHK 464 P D G FI+ W+PEL NVP YIH P S L++ + +YP PI+D K Sbjct: 412 PVKNSYEHDEDGEFIKKWIPELVNVPVAYIHEPWTMSALEQQFCNTVIGEDYPAPIIDIK 471 Query: 465 KACHHTLNQYYAAKKQSLL 483 K H + + K +++ Sbjct: 472 KTAKHAGDVLWKLKDDNMV 490 >gi|260772745|ref|ZP_05881661.1| deoxyribodipyrimidine photolyase single-strand-specific [Vibrio metschnikovii CIP 69.14] gi|260611884|gb|EEX37087.1| deoxyribodipyrimidine photolyase single-strand-specific [Vibrio metschnikovii CIP 69.14] Length = 451 Score = 116 bits (290), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 77/235 (32%), Positives = 124/235 (52%), Gaps = 16/235 (6%) Query: 206 PMFPIGEQNAL-HILRKFCKEKVYYYVEQRD-IPAIQGTSQLSPYLSIGVLSPRQCWNRL 263 P++ GE AL H+ F + Y + R+ + + +++ SP+L+ G LS + RL Sbjct: 208 PLWRGGESAALEHLEDYFSSDASLIYKQTRNALDEWESSTKFSPWLANGCLSIGRLLARL 267 Query: 264 KEEFVDLLIKPKSGAFSWLN-ELIWREFYRHLMAFYPSVCMG----KPFIPWTEKIEWNK 318 + + + + W+ EL+WRE+++ Y + K +P T Sbjct: 268 NDYETQ---RGANESTYWIYFELLWREYFQWYALKYGAQLFQFSGIKGQVPLTSYY---- 320 Query: 319 DSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMS 378 +++W G T +PI++AAM+QL G++ NR R + AS LV +L +DWR G +YF S Sbjct: 321 -PQRMRSWINGTTPYPIVNAAMKQLKATGYLSNRSRQLVASCLVHELSIDWRYGAQYFQS 379 Query: 379 QLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELN 433 QL+D D+ASN G WQ+ A G D + R F+ Q +DP+ +FIRHW E + Sbjct: 380 QLIDYDVASNWGNWQYLAGVGADPRGH-RRFDLAKQTALYDPELSFIRHWQGEAD 433 >gi|225011849|ref|ZP_03702287.1| Deoxyribodipyrimidine photo-lyase [Flavobacteria bacterium MS024-2A] gi|225004352|gb|EEG42324.1| Deoxyribodipyrimidine photo-lyase [Flavobacteria bacterium MS024-2A] Length = 490 Score = 116 bits (290), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 85/268 (31%), Positives = 130/268 (48%), Gaps = 25/268 (9%) Query: 209 PIGEQNALHILRKFCKEKVYYYVEQRDIP--AIQGTSQLSPYLSIGVLSPRQCWNRLKEE 266 P GEQ A L F + + Y + P A + S+LSPY++ G +S RQ R +EE Sbjct: 196 PGGEQKASRYLNSFFERRYLNYQKHISKPDLARKSCSRLSPYIAWGNISMRQVLQRTQEE 255 Query: 267 FVDLLIKPKSGAF-SWLNELIWR-----EFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDS 320 KS A S+ + L W+ +F Y S+ G + +++++ Sbjct: 256 KER---GNKSRALVSFGSRLRWQAHFIQKFEMECSMEYKSINKGYHALVKEKRVDY---- 308 Query: 321 HLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQL 380 L+AW+ G+TG P++DAAMR L T G+++ R+R + SF++ L W+ + Q Sbjct: 309 --LKAWETGHTGIPMVDAAMRCLVTTGYLNFRMRALVVSFVIHQLWQPWQSISGFLARQF 366 Query: 381 LDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYI 440 LD + + Q A G + RI+NP G DPQG F+ W+PEL +P +++ Sbjct: 367 LDFEPGIHFPQIQMQA--GETGINTLRIYNPVKNGLEHDPQGKFVSKWIPELQKLPERFL 424 Query: 441 HAP------HSWLDKNDLSLNYPLPIVD 462 H P S L L +YP PIVD Sbjct: 425 HTPWEITPLESSLYDFKLGEDYPHPIVD 452 >gi|261400529|ref|ZP_05986654.1| deoxyribodopyrimidine photolyase [Neisseria lactamica ATCC 23970] gi|269209791|gb|EEZ76246.1| deoxyribodopyrimidine photolyase [Neisseria lactamica ATCC 23970] Length = 429 Score = 116 bits (290), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 123/469 (26%), Positives = 191/469 (40%), Gaps = 94/469 (20%) Query: 3 ATTAMSVH-LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFI 61 AT A +++ LVW R +LRI DN AL AA + +I ++I E + R++ F Sbjct: 7 ATVAHAMYTLVWFRQNLRIRDNAALCAAVAEG-SPIIGIWIDDAETG-----NPRRTAFY 60 Query: 62 YASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDK 121 S ++ + L+ +GI S L ++ + + + + + D Sbjct: 61 RQSAAELAQVLAGRGIPLYTAA------SPAGLVRLAVRLNIRTVIADASHTFADKLADN 114 Query: 122 LLEKRLQHRVICKSF-------DDSVLLPPGSILNHALQMYK----------------VY 158 L L I +F D++ L+P + Y+ ++ Sbjct: 115 ALWHELDKHGIALTFVNDRSVFDNTDLIPDNGTAHTDFNRYREVWLDRFSKHPPADSDLF 174 Query: 159 TPFRKALIQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHI 218 +R+ +NL P PA G P N GE A Sbjct: 175 AAYRQPFPENL------PAPQPAAFSDGIFLPQNG-----------------GETAAWRQ 211 Query: 219 LRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGA 278 R+F ++ Y V +D P+ + TS + YLS G +SPR L E ++ + Sbjct: 212 WRRFLEQADSYSV-LKDFPSRKNTSLMGAYLSAGCISPRL----LARESLERRLN----- 261 Query: 279 FSWLNELIWREFYRHLMAFYP--SVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPII 336 +W + +I R+F+ L + + G P + + L W+QG TG PII Sbjct: 262 -AWADNIIRRDFFLQLALQHADDAPSDGNP-----------EHTLRLTLWQQGRTGIPII 309 Query: 337 DAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAA 396 DAAMR L+ G +H L+ ++A F L + R GE +F QL D D A N G W+ AA Sbjct: 310 DAAMRCLHKTGSLHPALKRLSADFFCHVLNLPRREGEIWFARQLTDFDAAINQGNWRLAA 369 Query: 397 STGNDSVPYFRIFNPTIQGK--RFDPQGTFIRHWLPELNNVPTQYIHAP 443 S R P I R DP GTFI+ +PEL ++ +H P Sbjct: 370 S---------RHTCPDIAAASYRTDPDGTFIKRHIPELAHLSADTVHTP 409 >gi|85711300|ref|ZP_01042359.1| putative deoxyribodipyrimidine photolyase [Idiomarina baltica OS145] gi|85694801|gb|EAQ32740.1| putative deoxyribodipyrimidine photolyase [Idiomarina baltica OS145] Length = 483 Score = 115 bits (289), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 129/476 (27%), Positives = 212/476 (44%), Gaps = 49/476 (10%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M++++VW + DLR++D++ L AA ++ + F P R FI S+ Sbjct: 1 MAINVVWFKRDLRLSDHEPLKAAI-STGRPTLLWFNFEPWLVNDPHYDERHWRFIVESIR 59 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEI-NEVRRDKLLEK 125 + + L + + D++E L + Q + L+ +++ + N RDK + Sbjct: 60 DINRKLK----AYNTQIYVTYGDTVEQLQIWHQQFSIESLYSHQEVGLLNTFDRDKQVAS 115 Query: 126 RL-QHRVICKSFDDSVLLPPGSI---LNHALQMYKVYTPFRKALIQNLVQADL-RSLPVP 180 QH V F+ P G++ LN Q K + KA L DL R PV Sbjct: 116 WCRQHHV--NWFES----PTGAVQRGLNSRQQWQKHWYETMKA---PLATPDLARIQPVK 166 Query: 181 AIRLTGPVTPSNIPRFFDYPFQAIDPMFPIG-EQNALHILRKFCKEK--VYYYVEQRDIP 237 A+ + P + +F+ P F G A L F +++ Y+Y + I Sbjct: 167 AVSVDYRTLPKS---WFER-----RPSFQYGGPAAAWATLNSFLEQRGRAYHYSISQPIR 218 Query: 238 AIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAF 297 A S+LSPYL+ G LS R+C+ ++ + K AF L+ L W + + F Sbjct: 219 AQHHCSRLSPYLAWGNLSLRECYQATVDKRRETGWKRPLNAF--LSRLHWHCHF--IQKF 274 Query: 298 YPSVCMG-KPFIPWTEKIEWNKDSHL---LQAWKQGYTGFPIIDAAMRQLNTIGWMHNRL 353 M P E + D+ + L+AW+QG TG+P++DAAMR L G+++ R+ Sbjct: 275 ESETAMQHAPLNRAYENYPYRSDTQVEQHLKAWQQGKTGYPMVDAAMRCLLQTGYINFRM 334 Query: 354 RMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAAS-TGNDSVPYFRIFNPT 412 R + SFL L + W+ + + LD + + Q A G +++ R++NP Sbjct: 335 RALLVSFLCHYLHIHWQYATTHLAALFLDFEPGIHYPQIQMQAGIIGTNTI---RMYNPE 391 Query: 413 IQGKRFDPQGTFIRHWLPELNNVPTQYIHAPH------SWLDKNDLSLNYPLPIVD 462 Q DP G +I W+PEL +P + HAP+ + + L +YP PIVD Sbjct: 392 KQAIEKDPTGAYIDQWVPELAELPLEIKHAPYRITPMEAQMYGFKLGEDYPSPIVD 447 >gi|126665677|ref|ZP_01736658.1| Deoxyribodipyrimidine photolyase [Marinobacter sp. ELB17] gi|126629611|gb|EBA00228.1| Deoxyribodipyrimidine photolyase [Marinobacter sp. ELB17] Length = 519 Score = 115 bits (289), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 120/512 (23%), Positives = 202/512 (39%), Gaps = 83/512 (16%) Query: 9 VHLVWLRNDLRITDNKALYAACH--NSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 + + WL+ +LR+ D++ + + KV+ ++ PE +Q +S + FI +L Sbjct: 1 MQIFWLKRNLRLQDSEPFFESMRAFRKKGKVLPLYCHEPELIQQPDVSRQHQLFIQETLE 60 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEIN-EVRRDKLLEK 125 ++ + G ++++ LD Q +TK++ +++ N + +RDK + Sbjct: 61 ELDRDFQSIGGKL----LQAVGETVDVLDRIHRVQPLTKIWTHQETTQNSQFQRDKAVA- 115 Query: 126 RLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185 C +L + + Q +++ P+ + + +L Sbjct: 116 -----AWCADHGVELLELAQNGIARGSQKPELFPPYFACSVSS--------------KLR 156 Query: 186 GPVTPSNIPRFFDYPFQAIDPMF---------PI----GEQNALHILRKFCKE---KVYY 229 P+ RF PF + DP P+ G A+ L +F K Y Sbjct: 157 DPIGTDLAERFAPLPFPSCDPKAIPKAAGTDKPLRQKGGRSQAIKNLNRFFTVPYLKQYP 216 Query: 230 YVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFS--------W 281 + A QG S++S YL+ G++S R+ + + D + + F + Sbjct: 217 FQISSPNTAWQGCSRISTYLAYGIVSDRELFQAVDRVVTDAHSRMNADQFGKFQENARFY 276 Query: 282 LNELIWREFYRHLMAFYPSV---CMGKPF-------------IPWTEKIEWNKDSHLLQA 325 L+ L WR Y P + CM F + + + A Sbjct: 277 LDRLSWRRQYMQTFEASPELEFQCMLAQFNGVREADYSEGHSLTHSSTPSSGQSEQHFTA 336 Query: 326 WKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDL 385 WKQG TGFP IDAAMR LN GW++ RLR SF +L + EY ++ LD + Sbjct: 337 WKQGLTGFPYIDAAMRFLNQTGWINMRLRATLVSFATMNLWIPTTKVAEYLATEFLDYEP 396 Query: 386 ASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHS 445 ++ Q A G +++P QG+ D G FIR W+PEL +VP +H Sbjct: 397 GIHHVIHQIIA--GTTEFNELMVYDPVKQGRDHDLDGHFIRKWVPELADVPGSELHD--- 451 Query: 446 WLDKNDLSLN----------YPLPIVDHKKAC 467 L K L+ YP IVDH+ Sbjct: 452 -LAKTAFRLSKQAEIRGYMPYPEAIVDHRATA 482 >gi|261047492|gb|ACX54505.1| cryptochrome 1 [Capsella bursa-pastoris] Length = 166 Score = 115 bits (288), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 67/172 (38%), Positives = 99/172 (57%), Gaps = 11/172 (6%) Query: 261 NRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDS 320 N EE V+L +K + RE+ R++ +P +P + + W D Sbjct: 6 NEAGEESVNLFLK----------SIGLREYSRYISFNHP-YSHERPLLGHLKFFPWAVDE 54 Query: 321 HLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQL 380 + +AW+QG TG+P++DA MR+L GW+H+R+R++ +SF VK L + WR G +YF L Sbjct: 55 NYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFVKVLQLPWRWGMKYFWDTL 114 Query: 381 LDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPEL 432 LD DL S+ GWQ+ T DS + RI NP +G +FDP G ++R WLPEL Sbjct: 115 LDADLESDALGWQYITGTLPDSREFDRIDNPQFEGYKFDPNGEYVRRWLPEL 166 >gi|302745162|gb|ADL62684.1| cryptochrome 4 [Phreatichthys andruzzii] Length = 274 Score = 115 bits (288), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 79/244 (32%), Positives = 123/244 (50%), Gaps = 19/244 (7%) Query: 193 IPRFFDYPFQA-IDPMFPIGEQNALHILRKFCKEK--VYYYVEQRDIP--AIQGTSQLSP 247 +P D + D ++P GE +AL L K + + V + + R +P + ++ LSP Sbjct: 39 VPSLADLGLEVEFDVLWPGGETHALQRLDKHFQSQGWVTSFSKTRTVPNSLLPSSTGLSP 98 Query: 248 YLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAF---SWLNELIWREFYRHLMAFYPSVCM- 303 YLS+G LS R +++L + + K+ + S +++WREF+ + + P+ Sbjct: 99 YLSLGCLSVRTFYHQLSSVYA----QSKNHSLPPLSLQGQVLWREFFYTVASSTPNFTKM 154 Query: 304 -GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLV 362 G P +I+W D L+ W+ TGFP IDA M QL GW+H+ R A FL Sbjct: 155 EGNPIC---LQIQWYHDPEALEKWRTAQTGFPWIDAIMTQLRQEGWIHHLARHAVACFLT 211 Query: 363 K-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQ 421 + DL + W G + F LLD D + N G W W +++ Y RIF P G+R DPQ Sbjct: 212 RGDLWISWEEGMKVFEELLLDADYSINAGNWMWLSASAFFH-KYTRIFCPVRFGRRTDPQ 270 Query: 422 GTFI 425 G ++ Sbjct: 271 GQYL 274 >gi|260829106|ref|XP_002609503.1| hypothetical protein BRAFLDRAFT_230208 [Branchiostoma floridae] gi|229294860|gb|EEN65513.1| hypothetical protein BRAFLDRAFT_230208 [Branchiostoma floridae] Length = 522 Score = 115 bits (288), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 83/253 (32%), Positives = 118/253 (46%), Gaps = 16/253 (6%) Query: 242 TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSV 301 T+ LSPY S G LS R ++RL + + L ++ A S +I R L+ Sbjct: 252 TTGLSPYFSFGCLSVRHFYHRLDKIYAKLR-SHQTSASSKSRVMIERTRCVLLLEMLSRT 310 Query: 302 C-----MGKPFIPWTEKIEWNKDSHLLQAW--KQGYTGFPIIDAAMRQLNTIGWMHNRLR 354 C + W + S + + TGFP IDA M QL GW+H+ R Sbjct: 311 CRLIARLIFLLCNWHNRFLQLTISDFVACFLSSVAETGFPWIDAIMSQLQKEGWVHHLAR 370 Query: 355 MITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTI 413 A FL + DL + W G++ F LLD D + N G W W + + Y RIF P Sbjct: 371 HAVACFLTRGDLWISWEEGQKVFEELLLDADYSVNAGNWMWLSGSAFYH-QYTRIFCPVR 429 Query: 414 QGKRFDPQGTFIRHWLPELNNVPTQYIHAP-HSWLDKND-----LSLNYPLPIVDHKKAC 467 GKR DP GTFIR +LP L + P QYI+ P + L+ + + ++YP P+VDH+ Sbjct: 430 FGKRTDPDGTFIRAYLPVLKDFPAQYIYEPWKAPLNVQEAAGCIVGMDYPFPMVDHEIVS 489 Query: 468 HHTLNQYYAAKKQ 480 L ++Q Sbjct: 490 QQNLELMREIREQ 502 >gi|159463644|ref|XP_001690052.1| cryptochrome DASH2 [Chlamydomonas reinhardtii] gi|158284040|gb|EDP09790.1| cryptochrome DASH2 [Chlamydomonas reinhardtii] Length = 647 Score = 115 bits (288), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 77/244 (31%), Positives = 108/244 (44%), Gaps = 42/244 (17%) Query: 238 AIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLL----------------------IKPK 275 + +++LSP+ ++G ++PR+ + ++ V + P Sbjct: 412 GVDSSTKLSPFCALGCITPRRIYQEVEAVRVAAKAAAVPCSVGAEAGGGGGGGAAHLLPA 471 Query: 276 SGAFSWLN-ELIWREFYRH------LMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQ 328 WL L R+F+ + L +G+P + W +D +L W Sbjct: 472 PAECDWLAMHLCIRDFWTYTVLKEGLATLDERGIVGQP-------VSWRRDPEVLARWCS 524 Query: 329 GYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASN 388 G TG P +DA MR+L GWM NR R AS L KDL DWR G E F LLD D+A N Sbjct: 525 GRTGLPFVDANMRELAATGWMSNRGRQNVASLLAKDLQQDWRWGAELFECLLLDSDVAVN 584 Query: 389 NGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLD 448 W + A GND P R F QG ++D WLPEL ++P + HAP S Sbjct: 585 YCNWNYFAGVGND--PRNRRFKTVTQGMQYDEDAVLAATWLPELAHLPPRLRHAPWS--- 639 Query: 449 KNDL 452 NDL Sbjct: 640 -NDL 642 >gi|148980022|ref|ZP_01815843.1| deoxyribodipyrimidine photolyase [Vibrionales bacterium SWAT-3] gi|145961465|gb|EDK26769.1| deoxyribodipyrimidine photolyase [Vibrionales bacterium SWAT-3] Length = 447 Score = 115 bits (287), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 81/264 (30%), Positives = 124/264 (46%), Gaps = 35/264 (13%) Query: 194 PRFFDYPF-------QAIDPMFPIGEQNA--LHILRKFCKEKVYYYVEQRD-IPAIQGTS 243 P+ YP+ +A D +G + A +H+ F + Y + R+ + I+ ++ Sbjct: 179 PQTATYPYREPILESEASDIGDYVGGETAGLIHLESYFSNDYAGTYKQTRNALDGIENST 238 Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFS---WLN-ELIWRE-FYRHLMAFY 298 + SP+L++G +SP+ + LK+ + GA W+ EL+WRE FY + Sbjct: 239 KFSPWLALGCVSPKTIYRHLKQ------FEAHRGANDSTYWIYFELLWREYFYWKCLTLG 292 Query: 299 PSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITA 358 S+ E++ WK G T +PI+DA MRQLN G+M NR R + A Sbjct: 293 TSLFGRASNDLSNEQLLDTNTGASFARWKSGNTNYPIVDACMRQLNATGYMSNRGRQLVA 352 Query: 359 SFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPY------------- 405 S L+ +L +DWR G YF SQL+D D+ASN G W + A N P Sbjct: 353 SCLIHELGIDWRHGAAYFESQLIDYDVASNWGNWAYIAGALNPQAPQNANKQSVAHQSQF 412 Query: 406 -FRIFNPTIQGKRFDPQGTFIRHW 428 R F+ Q + +DP+ FI W Sbjct: 413 KSRHFDLVKQTEMYDPEHAFINKW 436 >gi|294670537|ref|ZP_06735417.1| hypothetical protein NEIELOOT_02259 [Neisseria elongata subsp. glycolytica ATCC 29315] gi|291307816|gb|EFE49059.1| hypothetical protein NEIELOOT_02259 [Neisseria elongata subsp. glycolytica ATCC 29315] Length = 235 Score = 114 bits (286), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 80/242 (33%), Positives = 112/242 (46%), Gaps = 30/242 (12%) Query: 230 YVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWRE 289 Y Q PA +G SQLS + G LS R+ ++E G +WL+ R Sbjct: 12 YPLQGGFPAKKGVSQLSAHFCFGTLSVREVCRNIRES--------GQGGAAWLDGPARRA 63 Query: 290 FYRHLMAFYPSVC-----MGKPFIPWTE--KI--EWNKDSHLLQAWKQGYTGFPIIDAAM 340 + R + F + G+ + W + K+ E ++ L W++G TG PIIDAAM Sbjct: 64 YCRRALPFSDGLLELTMKGGRAALHWLQLPKMIREPDRGGEALMRWQEGRTGVPIIDAAM 123 Query: 341 RQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGN 400 R LN G +H LR + A FL L + GE F ++L D + A N+ WQ Sbjct: 124 RALNGGGSLHPALRRLCADFLTGRLNISAAHGEACFAARLTDYEYAVNHHNWQQVG---- 179 Query: 401 DSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLN-YPLP 459 R+ NP + DP G FIR LPEL ++P +H PH L +D+ N YP P Sbjct: 180 ------RLNNPFAESLNLDPDGRFIRRHLPELAHLPASALHTPH--LAGSDVETNGYPPP 231 Query: 460 IV 461 V Sbjct: 232 CV 233 >gi|327342156|gb|AEA50865.1| cry2-2 [Populus tremula] Length = 234 Score = 114 bits (286), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 78/214 (36%), Positives = 114/214 (53%), Gaps = 24/214 (11%) Query: 211 GEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRL------- 263 G NA L +F ++ + YVE R + TS LSPYL G LS R+ + + Sbjct: 31 GWSNADKALTEFAEQHLIDYVESR-LKVGTSTSLLSPYLHFGELSVRKVFQCVQLKQLLW 89 Query: 264 -KEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYP-----SVCMGKPFIPWTEKIEWN 317 KEE +L+ K F L + RE+ R+L +P S+ + PW N Sbjct: 90 AKEE--NLMGKESVTLF--LRSIGLREYSRYLCFNFPFTHERSLLSNLKYFPW------N 139 Query: 318 KDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFM 377 + +AW+QG TG+P++DA MR+L GW+HN++R+I +SF VK LL+ WR G +YF Sbjct: 140 DNQVHFKAWRQGRTGYPLVDAGMRELWATGWIHNKIRVIVSSFAVKVLLLPWRWGMKYFW 199 Query: 378 SQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNP 411 LLD DL S+ GWQ+ + + D+ R+ NP Sbjct: 200 DTLLDADLESDILGWQYISGSLPDAHELERLDNP 233 >gi|156977867|ref|YP_001448773.1| deoxyribodipyrimidine photolyase [Vibrio harveyi ATCC BAA-1116] gi|156529461|gb|ABU74546.1| hypothetical protein VIBHAR_06659 [Vibrio harveyi ATCC BAA-1116] Length = 493 Score = 114 bits (285), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 119/452 (26%), Positives = 201/452 (44%), Gaps = 44/452 (9%) Query: 8 SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67 +++LVWL+ DLR+TD+ L A + + V+ ++I P S R F++ S+ Sbjct: 3 TINLVWLKRDLRLTDHLPLQHAVSSKNPTVL-LYIFEPMLLDDPHYSERHWRFVWQSIQD 61 Query: 68 VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEIN-EVRRDKLLEKR 126 + L+Q F ++ + L + Q + +F +++ +N RDK + Sbjct: 62 MNAQLAQHNQKVSV----MFGNARDCLSAIQNQFSIDAVFSHQEIGLNCTFERDKQVSAW 117 Query: 127 LQHRVI-CKSFDDSVLLPPGSILNHALQMY---KVYTPFRKALIQN--LVQADLRSLPVP 180 LQ + I F+ G+++ A + K + ++ I+ L A L +L V Sbjct: 118 LQAQDIPWHEFEH------GAVVRGAKDRFGWDKHWDTVMRSPIEEVELESASLITLDVE 171 Query: 181 AIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ 240 A+ T PS + + + + G A L F + + Y P Sbjct: 172 ALGFTFTPPPSWLEK--------VKGVQTGGSSIAWQTLEDFFQRRGRDYYRSISSPTAS 223 Query: 241 GT--SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFY 298 T ++LSPYL+ G +S R+ + L + + + A S + L W + H M + Sbjct: 224 RTACTRLSPYLAWGNISLREVYQYLLQHWQVTGFRRSLIALS--SRLHW---HCHFMQKF 278 Query: 299 PSVC------MGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNR 352 S C + + + P + N D L AWK G TG P++DA MR L+ G+++ R Sbjct: 279 ESECEMEFRCVNQAYDPLLRQAS-NNDPIRLDAWKAGTTGIPLVDACMRCLHHTGYINFR 337 Query: 353 LRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAAS-TGNDSVPYFRIFNP 411 +R + SFL + +DWR G + LD + + +Q A TG +++ RI+NP Sbjct: 338 MRAMLVSFLTHHMNMDWRDGVTHLAQLFLDFEPGIHYPQFQMQAGVTGTNTI---RIYNP 394 Query: 412 TIQGKRFDPQGTFIRHWLPELNNVPTQYIHAP 443 T Q + D G FI W+PEL VPT + P Sbjct: 395 TKQAQEHDTDGEFIHKWIPELAKVPTPLLFEP 426 >gi|260765941|gb|ACX50001.1| cryptochrome 1 [Capsella bursa-pastoris] Length = 143 Score = 114 bits (285), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 66/142 (46%), Positives = 89/142 (62%), Gaps = 8/142 (5%) Query: 333 FPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGW 392 +P++DA MR+L GW+H+R+R++ +SF VK L + WR G +YF LLD DL S+ GW Sbjct: 1 YPLVDAGMRELWATGWLHDRIRVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGW 60 Query: 393 QWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIH----APHSWLD 448 Q+ T DS + RI NP +G +FDP G ++R WLPEL+ +PT +IH AP S L Sbjct: 61 QYITGTLPDSREFDRIDNPQFEGYKFDPNGEYVRRWLPELSRLPTDWIHHPWNAPESVLQ 120 Query: 449 KNDLSL--NYPLPIV--DHKKA 466 + L NYP PIV D KA Sbjct: 121 AAGIELGSNYPRPIVGLDEAKA 142 >gi|88802282|ref|ZP_01117809.1| putative deoxyribodipyrimidine photolyase [Polaribacter irgensii 23-P] gi|88781140|gb|EAR12318.1| putative deoxyribodipyrimidine photolyase [Polaribacter irgensii 23-P] Length = 496 Score = 114 bits (285), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 128/496 (25%), Positives = 206/496 (41%), Gaps = 45/496 (9%) Query: 4 TTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYA 63 T +H+VW + DLR+ DN+A+ A S+ +V+ +++ R FI Sbjct: 3 TNKEEIHVVWFKRDLRLQDNEAIQNALA-SNKRVLFLYVFENSLIEDPHYDTRHWDFIKQ 61 Query: 64 SLLQVQKSLSQ---KGIVFQYHQCSNFD---DSIEWLDSYCLQQRVTKLFYNRQYEINEV 117 S++ + L + K + Q + F+ DS + + Q+ + YNR E Sbjct: 62 SVVALNAELKKYDTKVLCVQTEVVNAFNQIFDSFKVDTVFSHQETGLLITYNRDKEFTRY 121 Query: 118 RRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSL 177 R+ + V K +++ +L +LN A K I+N + A+ Sbjct: 122 CRN--------NSVTWKENNNNGVLR--GLLNRADWFDKWDDYMYDTQIKNTLNAEKFIS 171 Query: 178 PVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIP 237 ++ + FQ G + A F + + Y+ P Sbjct: 172 IEEIEQIEAYFNTVALETPKHSYFQ------QGGTKMAWKYADTFFQTRHEKYMSNISKP 225 Query: 238 AI--QGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAF----SWLNELIWREFY 291 A+ Q S+LSPYL+ G +S RQ + + D K GAF W I + Sbjct: 226 ALARQSCSRLSPYLAWGNVSIRQIFQEATKRKTDA-NKRHLGAFISRLRWQAHFIQKFEM 284 Query: 292 RHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHN 351 H M S+ G + + +E+ K AW+ G TGFP+IDA+MR L G+++ Sbjct: 285 EHTME-NASINKGYQKLKKSISLEYQK------AWETGTTGFPLIDASMRCLKETGYLNF 337 Query: 352 RLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNP 411 R+R + SF L W+ ++ LD + + Q A G + RI+NP Sbjct: 338 RMRAMVVSFFTHILWQPWQSSSQHLSKLFLDFEPGIHFSQLQMNA--GETGINTLRIYNP 395 Query: 412 TIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPH--SWLDKN----DLSLNYPLPIVDHKK 465 D GTFI+ W+PEL N+ +IH P+ + LD+ +L +NYP PIVD K Sbjct: 396 IKNSIEHDEDGTFIKKWVPELANLSIAFIHEPYLMTPLDQQFNNFELGINYPHPIVDIKI 455 Query: 466 ACHHTLNQYYAAKKQS 481 A + + KK S Sbjct: 456 ARKKASDTLWEMKKNS 471 >gi|119476543|ref|ZP_01616894.1| Deoxyribodipyrimidine photolyase [marine gamma proteobacterium HTCC2143] gi|119450407|gb|EAW31642.1| Deoxyribodipyrimidine photolyase [marine gamma proteobacterium HTCC2143] Length = 444 Score = 114 bits (284), Expect = 5e-23, Method: Compositional matrix adjust. Identities = 117/459 (25%), Positives = 199/459 (43%), Gaps = 48/459 (10%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIA-----TPEQWRQHGISARQSHFIYA 63 V L W +DLRI DN L A D +I ++ A P + +S R+ F++ Sbjct: 4 VGLFWFNHDLRIDDNATLLRAAAEVDT-LICLYCADTAKTGPGSRQPAELSLRRREFLFE 62 Query: 64 SLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLL 123 SL ++ L++ G +E + V+ ++ + E +L Sbjct: 63 SLQDLEAQLNRHGQKL----VVRIQPPLEAIAQLITVHNVSHIYRSNHVGSYENTIWTIL 118 Query: 124 EKRLQHRVICKSFDDSVLLPPGSILNHAL-QMYKVYTPFRKALIQNLVQADLRS-LPVPA 181 KR + ++ P S L A+ Q+ ++ FR+ + + + + + LP P Sbjct: 119 RKRYGMLTFTQCHTHTLFEP--SQLPFAIDQLPSSFSKFRRVVEKMDINSGIAEPLPTP- 175 Query: 182 IRLTGPVTPSNIP---RFFDYPFQAID-PMFPIGEQNA--LHILRKFCKEKVYYYVEQRD 235 L P +++ R+ +Y Q+ D P G +A H+ F + Y R+ Sbjct: 176 TSLPKPALVADLAWQKRWHEYFTQSSDSPALFRGGASAGRRHLENYFGSRRASDYKATRN 235 Query: 236 -IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGA----FSWLNELIWREF 290 + + +++ SP+L+ G LS R +L+ + ++GA + L EL+WRE+ Sbjct: 236 GLDGMDYSTKFSPWLANGSLSTRHIVRQLQG------YEERAGANDSTYWILFELLWREY 289 Query: 291 -------YRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQL 343 Y+ + + + P + + + W G T + II+A MRQL Sbjct: 290 FQWYGHKYQQRLFTFSGIGNSTPITSFYPE--------RFKKWCVGNTPYAIINACMRQL 341 Query: 344 NTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSV 403 N G++ NR R + AS V +L +DWR G YF QL+D D+ASN G WQ+ A G D Sbjct: 342 NATGYLSNRGRQLAASCFVHELGLDWRHGATYFEQQLVDYDVASNWGNWQYLAGVGADPR 401 Query: 404 PYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHA 442 + R F+ Q + +DP F+ W E + P + A Sbjct: 402 GH-RHFDLQKQAQIYDPDNHFVHRWAGEDSLQPLDSVDA 439 >gi|329896420|ref|ZP_08271519.1| Deoxyribodipyrimidine photolyase/cryptochrome family protein [gamma proteobacterium IMCC3088] gi|328921840|gb|EGG29211.1| Deoxyribodipyrimidine photolyase/cryptochrome family protein [gamma proteobacterium IMCC3088] Length = 499 Score = 114 bits (284), Expect = 5e-23, Method: Compositional matrix adjust. Identities = 127/501 (25%), Positives = 211/501 (42%), Gaps = 50/501 (9%) Query: 1 MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHF 60 M A + V VW + DLR+ D+ L AA + ++ VF PE S R F Sbjct: 1 MSANEGLQV--VWFKRDLRLEDHAPLAAAANGKPTLLLYVF--EPELMNDPHYSERHWRF 56 Query: 61 IYASLLQVQ---KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEV 117 + SLL++ + L+Q+ + + +E LD+ ++ L + + + Sbjct: 57 VTQSLLEMNGRLEPLNQRVYILK-------GSMLEVLDAIHAHNPISNLLSHEETGLRVT 109 Query: 118 -RRDKLLEKRL-QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLR 175 RDK + QHRV + + + + + + + Q L + + Sbjct: 110 YERDKAISTWCRQHRVNWQEYQSN------GVKRGRYSRDGWAHDWHRVMSQPLAEPEWA 163 Query: 176 SLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNAL-HILRKFCKE--KVYYYVE 232 L +PA ++ + + DP +G A H L F E K+Y+ Sbjct: 164 QL-LPAEDQQRCLSDYVMESALLKAWSTRDPSHQLGGVGAAQHALESFFDERGKIYHKAL 222 Query: 233 QRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSG---AFSWLNELIWRE 289 + + + + S+LSPYL+ G LS RQ + RL+ E + +SG A S LN + Sbjct: 223 SKPLLSRKHCSRLSPYLAWGNLSIRQVYQRLQAE------RGRSGWGRALSALNSRL--H 274 Query: 290 FYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLL---QAWKQGYTGFPIIDAAMRQLNTI 346 ++ H + + S + F P +D H L QAW G TG P +DA +R L Sbjct: 275 WHCHFIQKFESEDRIE-FEPMNFGYHQFQDDHSLANEQAWATGNTGIPYLDACLRCLQNT 333 Query: 347 GWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYF 406 G++H R R + S L + W+ LD + + Q G + Sbjct: 334 GYLHFRGRAMIVSALCHLMQGRWQFAARQLAQWFLDFEPGIHYA--QIQMQVGLTGINTL 391 Query: 407 RIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSW----LDKNDLSLNYPLPIVD 462 RI+NP QG DP FI+ W+PEL+ +P +H P W +++ + +NYP P++D Sbjct: 392 RIYNPVKQGLDHDPDAVFIKKWVPELSELPVPLVHTP--WELGPIERACMDMNYPDPVID 449 Query: 463 HKKACHHTLNQYYAAKKQSLL 483 +A H Y ++Q+ L Sbjct: 450 IAQA-HKAARALYWDRRQNPL 469 >gi|124107288|dbj|BAF45421.1| cryptochrome precursor [Dianemobius nigrofasciatus] Length = 539 Score = 113 bits (283), Expect = 6e-23, Method: Compositional matrix adjust. Identities = 125/505 (24%), Positives = 214/505 (42%), Gaps = 79/505 (15%) Query: 14 LRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQKSLS 73 R+ LR+ DN AL A + DA + +FI E + + F+ SL + L Sbjct: 16 FRHGLRLHDNPALLDAVKDCDA-FLPIFIFDGESAGTKLVGYNRMKFLLESLQDIDSQLK 74 Query: 74 QKG-----------IVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKL 122 + G VFQY +I L C +Q ++ +R + + ++ Sbjct: 75 KYGGNLYLFHGTPLCVFQY-----ISQTIG-LHKLCFEQDCEPIWQHRDDLVKKFCKENG 128 Query: 123 LE--KRLQHRV-----ICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLR 175 ++ +R+ H + + K+ + +PP + + + P R + Sbjct: 129 IKCIERVSHTLWNPHDVIKT---NGGIPPLTFEMFVHTVSVIGPPPRPVEDVEWSVVNFG 185 Query: 176 SLPVPAIRLTGPVTPSNIPRFFDYPF-------QAIDPMFPI-----GEQNALHILRKFC 223 LP+ +I PS+I F ++P + M I GE AL L++ Sbjct: 186 VLPMSSI-------PSDIKVFKNFPTPEDFGISSEVGNMNRIIQWIGGESQALRHLQERL 238 Query: 224 KEKVYYYVEQRDIPAIQGTSQLSP------YLSIGVLSPRQCWNRLKEEFVDLLIKPKSG 277 K + + E +P L P L G LS R+ + +++ + + + Sbjct: 239 KVEENAFREGYCLPNQARPDLLGPPTSQSAALRFGCLSVRKFYWSIQDMYSSICGPSPNQ 298 Query: 278 AFSWLNELIWREFYRHLMA---FYPS-----VCMGKPFIPWTEKIEWNKDSHLLQAWKQG 329 + ++LIWRE++ + +Y +C+ IPW K ++ D WK+G Sbjct: 299 NIT--SQLIWREYFYTMSVGNEYYAEMDRNPICLN---IPW--KNDYGSD---FNKWKEG 348 Query: 330 YTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASN 388 TG+P IDA MRQL GW+H+ R A FL + DL + W G +F+ LLD D + Sbjct: 349 KTGYPFIDAIMRQLIQEGWIHHVARNAVACFLTRGDLWISWEEGLNFFLQYLLDADWSVC 408 Query: 389 NGGWQWAASTGNDS-VPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAP-HSW 446 G W W +S+ + + P G+R DP G +I+ ++PEL N P +Y++ P + Sbjct: 409 AGNWMWVSSSAFEQLLDCSHCMCPVNYGRRLDPWGQYIKRYIPELKNYPVEYLYEPWKAP 468 Query: 447 LDKND-----LSLNYPLPIVDHKKA 466 L + + +YP I+DH+ A Sbjct: 469 LHVQETAGCIVGKDYPERIIDHQIA 493 >gi|327342142|gb|AEA50858.1| cry1-1 [Populus tremula] Length = 308 Score = 113 bits (283), Expect = 6e-23, Method: Compositional matrix adjust. Identities = 91/315 (28%), Positives = 141/315 (44%), Gaps = 32/315 (10%) Query: 117 VRRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRS 176 VR + E + +SF+ +L P + + + + + F + + + Sbjct: 5 VRDHRAKEILTAQGITVRSFNADLLYEPWDVNDAQGRPFTTFDTFWERCLSMPFDPEAPL 64 Query: 177 LPVPAIRLTGPVT--PSNIPRFFDYPFQAIDPM----FPIGEQNALHILRKFCKEKVYYY 230 LP P ++G V+ PS F D + + + + G NA L F + Y Sbjct: 65 LP-PKRIISGDVSRCPSVTLVFEDESEKGSNALLARAWSPGWSNADRALTTFINGPLIEY 123 Query: 231 VEQRDIPAIQGTSQLSPYLSIGVLSPRQCW--------------NRLKEEFVDLLIKPKS 276 R TS LSP+L G +S R+ + N+ EE V+L IK Sbjct: 124 SMNRRKADSATTSFLSPHLHFGEVSVRKVFHLVRIKQVLWANEGNKAGEESVNLFIK--- 180 Query: 277 GAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPII 336 + RE+ R+L +P +P + + W D +AW+QG TG+P++ Sbjct: 181 -------SIGLREYSRYLSFNHP-YTHERPLLGHLKFFPWVVDEGYFKAWRQGRTGYPLV 232 Query: 337 DAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAA 396 DA MR+L GW+H+R+R++ ASF VK L + WR G +YF LLD DL S+ GWQ+ Sbjct: 233 DAGMRELWAAGWLHDRIRVVVASFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYIT 292 Query: 397 STGNDSVPYFRIFNP 411 T D + RI NP Sbjct: 293 GTLPDCREFDRIDNP 307 >gi|322694523|gb|EFY86350.1| Putative cryptochrome DASH [Metarhizium acridum CQMa 102] Length = 702 Score = 113 bits (283), Expect = 7e-23, Method: Compositional matrix adjust. Identities = 81/258 (31%), Positives = 117/258 (45%), Gaps = 30/258 (11%) Query: 208 FPIGEQNALHILRKFCKEKVY--YYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLK- 264 F GE + LR K Y + + + + +LS YLS+G L+ RQ L Sbjct: 263 FTGGETSGWARLRHLGKSSAMTSYKDTRNGLVGVDYSLKLSAYLSLGCLTARQIHEELLK 322 Query: 265 -EEFVDLLIKPKSGAFSWLN--------ELIWREFYR-----------HLMAFYPSVCMG 304 E+ D K G N EL+WR++ R L F Sbjct: 323 LEDGTDEQYKDAVGYGEGENDGTKGIRFELLWRDYMRLCTAKFGRKLFRLSGFRQDRSYD 382 Query: 305 KPFIPWTEKIEWNKD-------SHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMIT 357 K + E+ ++ S +L+ ++ G TG IIDA+ R+L G+ NR R Sbjct: 383 KKWKTANEEKAASEQEPPPAQISKILERFQNGTTGMGIIDASQRELFHTGYTSNRARQNA 442 Query: 358 ASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKR 417 ASF K L +DWR G E++ L+D D++SN WQ+ A TGND R FNP Q Sbjct: 443 ASFFSKHLEIDWRYGAEWYEMMLVDYDVSSNWANWQYVAGTGNDPRGDARTFNPVKQAFD 502 Query: 418 FDPQGTFIRHWLPELNNV 435 +D +GT++R W+PEL + Sbjct: 503 YDKEGTYVRMWVPELQGL 520 >gi|254468682|ref|ZP_05082088.1| deoxyribodipyrimidine photolyase (photoreactivation) [beta proteobacterium KB13] gi|207087492|gb|EDZ64775.1| deoxyribodipyrimidine photolyase (photoreactivation) [beta proteobacterium KB13] Length = 416 Score = 113 bits (282), Expect = 7e-23, Method: Compositional matrix adjust. Identities = 112/443 (25%), Positives = 201/443 (45%), Gaps = 52/443 (11%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 MS ++ W RN+LRI DN L C + V+I G ++ F+ +L Sbjct: 1 MSHNIFWFRNNLRIHDNYPL-VQCIKDSTSISFVYIVNRHLRVLDGHENHKNKFLIDALN 59 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYN--RQYEINEVRRDKLL- 123 Q++ +LS G H+ Y ++ + +F + +QY+IN++ +K++ Sbjct: 60 QLKINLSDLG-----HEL------------YIIEGEPSDIFSSLAKQYQINKIYCEKIVS 102 Query: 124 -----EKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLP 178 E+ + SF DS LL + + + +T FRK + + A L Sbjct: 103 PYETDEELSITQTDVLSFWDSTLLNIDDLDFDVIDLPDTFTTFRKKVELKPITATL---- 158 Query: 179 VPAIRLTGPVTPSNIPRF----FDYPFQ-AIDPM--FPIGEQNALHILRKFCKEK--VYY 229 + L P SNI + FD ++ ++D + + I E A ++ + +K + Y Sbjct: 159 YEGLTLPKPANLSNINSYQLPNFDIKYRGSVDFLNHYTICENGAQKYVKDYFSDKKALEY 218 Query: 230 YVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFS---W-LNEL 285 + ++ +++ S +L+ G++S RQ + LK + +GA W L EL Sbjct: 219 KQTRNELMGNDFSTKFSVWLAHGLISARQIFTSLKN------YEESNGANESTYWILFEL 272 Query: 286 IWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNT 345 +WR+++R L Y + + E E ++D+ + ++ T I+A +R+L Sbjct: 273 LWRDYFRLLHFKYNRKLYFQFGLKNKEINETSQDN--ISNLEEANTESSFINAGIRELQN 330 Query: 346 IGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPY 405 G++ NR+R I ASF++ ++ +DWRIG ++F L+D D+ SN G W + A G D Sbjct: 331 SGFLSNRMRQILASFIIFEMKIDWRIGADFFQKYLIDFDIYSNQGNWIYIAGYGTDPRG- 389 Query: 406 FRIFNPTIQGKRFDPQGTFIRHW 428 R FN Q +D + W Sbjct: 390 GRRFNVEKQKNTYDIDNQYEMCW 412 >gi|121705010|ref|XP_001270768.1| DNA photolyase, putative [Aspergillus clavatus NRRL 1] gi|119398914|gb|EAW09342.1| DNA photolyase, putative [Aspergillus clavatus NRRL 1] Length = 613 Score = 113 bits (282), Expect = 9e-23, Method: Compositional matrix adjust. Identities = 82/266 (30%), Positives = 125/266 (46%), Gaps = 34/266 (12%) Query: 211 GEQNALHILRKFCKEKVYY--YVEQRDIPAI---QGTSQLSPYLSIGVLSPRQCW----- 260 GE AL +L + ++ Y + + + PA Q T+ LSP+L G LS R+ W Sbjct: 247 GETAALRVLAGYIQDGEYVGTFEKPKTSPAAFEPQATTLLSPHLHFGSLSVRKFWWDVQG 306 Query: 261 ---NRLKEE---------------FVDLLIKPKSGAFSWLNELIWREFYR----HLMAFY 298 R K++ F D+ ++ + + ++ R HL Y Sbjct: 307 VLQQRRKQKKANASIPTNLPGQLLFRDMYFAAQAAIGHAFGQTLGNKYVRFIDWHLPTNY 366 Query: 299 PSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITA 358 + GK T ++ ++ + + WK+G TGFP IDA MRQL GW+H+ R A Sbjct: 367 ITTEEGKYQPDGTYTVDSSEAENWFRRWKEGRTGFPWIDALMRQLKLEGWIHHLGRHSVA 426 Query: 359 SFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKR 417 FL + V W G E F L+D + A N G WQW + T S Y+ ++P GK+ Sbjct: 427 CFLTRGGCYVSWERGAEVFEDWLVDHETACNVGNWQWLSCTAFYSQ-YYHCYSPIAFGKK 485 Query: 418 FDPQGTFIRHWLPELNNVPTQYIHAP 443 +DP+G F+R + PEL N +YI+ P Sbjct: 486 WDPEGEFVRRYCPELANFDKKYIYEP 511 >gi|163801389|ref|ZP_02195288.1| deoxyribodipyrimidine photolyase, putative [Vibrio sp. AND4] gi|159174878|gb|EDP59678.1| deoxyribodipyrimidine photolyase, putative [Vibrio sp. AND4] Length = 493 Score = 112 bits (281), Expect = 9e-23, Method: Compositional matrix adjust. Identities = 130/495 (26%), Positives = 219/495 (44%), Gaps = 50/495 (10%) Query: 8 SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67 +++L+WL+ DLR+TD+ AL A +S + +++ P S R F++ SL Sbjct: 3 TINLLWLKRDLRLTDHLALQHAL-SSGHPTLLLYVFEPMLLEDPHYSERHWRFVWQSLQD 61 Query: 68 VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEIN-EVRRDKLLEKR 126 + L+ G H + ++ L + Q ++ +F +++ +N +RDK + Sbjct: 62 MNAQLADYG----QHILVLSGNVVDCLSAIQTQFDISAVFSHQEIGLNCTFKRDKQVANW 117 Query: 127 LQHRVI-CKSFDDSVLLPPGSILNHA---LQMYKVYTPFRKALIQN--LVQADLRSLPVP 180 LQ + I F+ G+++ A L K + +A I+N L A L SL Sbjct: 118 LQAQGIPWHEFE------YGAVVRGAKDRLGWDKHWNAVMRAAIRNPELKNASLISLSND 171 Query: 181 AIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ 240 + + PS R M G A L F + + Y + P+ Sbjct: 172 TLNCSFTPPPSWTVR--------TKGMQTGGSSVAWQTLDDFFQRRGRDYYRRISSPSAS 223 Query: 241 GT--SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFY 298 T ++LSPYL+ G +S R+ + L E + + A S + L W + H + + Sbjct: 224 RTACTRLSPYLAWGNISLREVYQYLLEHWQLAGFRRSLIALS--SRLHW---HCHFIQKF 278 Query: 299 PSVCMGKPFIPWTEKIE------WNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNR 352 S C + F + E ++D L+AWK G TG P+IDA MR L+ G+++ R Sbjct: 279 ESECKME-FRCVNQAYEALLRQACSQDQTALEAWKVGSTGIPLIDACMRCLHHTGYINFR 337 Query: 353 LRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQW-AASTGNDSVPYFRIFNP 411 +R + SFL + +DWR G + LD + + +Q A TG +++ RI+NP Sbjct: 338 MRAMLVSFLTHHMNMDWRDGVAHLAQLFLDFEPGIHYPQFQMQAGVTGTNTI---RIYNP 394 Query: 412 TIQGKRFDPQGTFIRHWLPELNNVPTQYIHAP------HSWLDKNDLSLNYPLPIVDHKK 465 T Q + D G FI W+PEL VPT + P + + + D Y PI+D Sbjct: 395 TKQAQEHDADGKFIHKWIPELAMVPTPLLFEPWKMTAMETVMYQIDPDSCYLAPIIDLDN 454 Query: 466 ACHHTLNQYYAAKKQ 480 + + +A +K+ Sbjct: 455 SAKAARERLWAWRKR 469 >gi|77361123|ref|YP_340698.1| deoxyribodipyrimidine photolyase [Pseudoalteromonas haloplanktis TAC125] gi|76876034|emb|CAI87256.1| putative deoxyribodipyrimidine photolyase [Pseudoalteromonas haloplanktis TAC125] Length = 503 Score = 112 bits (281), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 122/489 (24%), Positives = 218/489 (44%), Gaps = 43/489 (8%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M +++VW + DLR++D++ L A N + ++ P + R F+Y S++ Sbjct: 1 MKINIVWFKRDLRLSDHQPLKNAFSNG-LPTLLLYNFEPLMLEDTHYNERHWRFVYQSIV 59 Query: 67 QVQKSLSQ-KGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEV-RRDKLLE 124 ++ L++ V+ ++ N D +E L + Q + +F +++ +N RDK ++ Sbjct: 60 ELNNQLTRFNACVYIFN--LNMGDLLESLKT---QFEIVNIFSHQEIGLNNTFERDKAIK 114 Query: 125 KRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAI-R 183 QH I ++ +S G+++ +++ + + + +S+ + Sbjct: 115 VWCQHNHI--NWQESQT---GAVIRGKKNRNNWNERWQQTMQAPIAVPNWKSIKTITLNN 169 Query: 184 LTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGT- 242 P PS + D FQ P+ A +L+ F E+ Y + P++ Sbjct: 170 YQAPELPSAYTQNHD-SFQQGGPL------QARTVLQSFFAERGKGYQKGISSPSLSQVH 222 Query: 243 -SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWR-EFYRHLMAFYPS 300 S+LSPYL+ G +S RQ + +E+ K G L + R ++ H M + S Sbjct: 223 CSRLSPYLAWGNISLRQVYQMAFDEYHSKH-PDKRGWKRPLAAFVSRLHWHCHFMQKFES 281 Query: 301 VCMGK--PFIPWTEKIEWNKDSHL---LQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRM 355 C + P + D H+ ++ W QG TG PIIDA MR L G+++ R+R Sbjct: 282 ECSMEFLALNPGYHVFPYRDDEHVKSDIERWVQGQTGIPIIDACMRCLKATGYINFRMRA 341 Query: 356 ITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAAS-TGNDSVPYFRIFNPTIQ 414 + SF+ L + W+ + LD + + Q AS TG +++ R +NP Q Sbjct: 342 MLVSFVTHHLNISWQQASFPLANYFLDFEPGIHYPQIQMQASVTGINTI---RHYNPIKQ 398 Query: 415 GKRFDPQGTFIRHWLPELNNVPTQYIHAP------HSWLDKNDLSLNYPLPIVD---HKK 465 + DP G+FI+ W PEL +P +Y+H P + + L +YP P++D K Sbjct: 399 SEDQDPTGSFIKKWCPELEKLPIEYLHQPWQQTPMEALFNDFKLGEDYPEPMLDLTAASK 458 Query: 466 ACHHTLNQY 474 A L QY Sbjct: 459 AARERLWQY 467 >gi|255080632|ref|XP_002503889.1| predicted protein [Micromonas sp. RCC299] gi|226519156|gb|ACO65147.1| predicted protein [Micromonas sp. RCC299] Length = 869 Score = 112 bits (280), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 80/271 (29%), Positives = 123/271 (45%), Gaps = 15/271 (5%) Query: 186 GPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245 G + PS+ R + +A M G A ++ + D+ TS L Sbjct: 289 GLIPPSDAARDWSAGLRAEWDMSESGASEAWAQFKRMGLAGYEATHGRCDLTHKSSTSLL 348 Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAF-----YPS 300 SPYL G LSPR+ ++ L++ + G L+ W YR A+ +P Sbjct: 349 SPYLRFGQLSPRRVYSELRDARFGTAVDGVEGRR--LSRTFWHRLYRREFAYWQLGVFPQ 406 Query: 301 VCMGKPFIPWTEKIEW---NKD---SHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLR 354 + + + + +W +D + L+ W++G TGFP++DA MR+L GWMH R Sbjct: 407 LAVTSWRSHYESRGDWRWPERDPAAAEDLRRWQKGETGFPVVDAGMRRLIRTGWMHQTER 466 Query: 355 MITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFR-IFNPTI 413 M+ A+FLV L + W G +F L+D DLA N+ WQ A +G D F P Sbjct: 467 MLAATFLVDYLHIHWSHGARWFHDYLVDADLAINSMMWQNAGKSGLDQWDVFAGGLAPDG 526 Query: 414 QGKRFDPQGTFIRHWLPELNNVPTQYI-HAP 443 + DP G I ++PEL +P ++ H P Sbjct: 527 SARTHDPNGETIAQYVPELAGLPPGHLRHRP 557 >gi|88859578|ref|ZP_01134218.1| Deoxyribodipyrimidine photolyase [Pseudoalteromonas tunicata D2] gi|88818595|gb|EAR28410.1| Deoxyribodipyrimidine photolyase [Pseudoalteromonas tunicata D2] Length = 437 Score = 112 bits (280), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 114/441 (25%), Positives = 184/441 (41%), Gaps = 50/441 (11%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPE-----QWRQHGISARQSHFIYA 63 + L +DLR+ DN AL + D +I +++ P+ Q+ Q SA + F+ Sbjct: 4 IGLFIFDHDLRVLDNPALKVLADSVDT-LICLYVHVPQDAFSQQFSQTQPSAAKLGFLQQ 62 Query: 64 SLLQVQKSLS--QKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDK 121 L+++ ++L + +V ++ + + +Y +T + NE + Sbjct: 63 HLVELDENLRLLNQFLVIEHGSVPSV------VSNYIKHYGITDIGRTIHAGFNEQHHWQ 116 Query: 122 LLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPA 181 L+ C + S L + + K +TP RK Q V A P+ A Sbjct: 117 YLQATFPAVKFC-AHSGSSLFRLADLPFELADLPKSFTPCRKLFEQLTVPA-----PLEA 170 Query: 182 IRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKV-YYYVEQRDIPAIQ 240 + P S + D A + + GE A L + K Y E R+ A+ Sbjct: 171 LTYLPPPLLSTEHKKHDLKPSAFNRYYNGGEITAHAYLHHYFSSKAPSIYKETRN--ALM 228 Query: 241 G---TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFY-----R 292 G +++LS +L+ G LSPRQ LK + + EL+WRE++ + Sbjct: 229 GDDFSTKLSGFLAHGALSPRQIMAALKR--YESTQGANESTYWIYFELLWREYFYWYARK 286 Query: 293 HLMAFYPS-----VCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIG 347 H + + + F P + W +G T +P+++A MR+LN G Sbjct: 287 HQQRLFSAGGVRQKSLATSFYP-----------SRFKQWCEGSTPYPLVNALMRELNETG 335 Query: 348 WMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFR 407 WM NR R I AS V +L +DWR G YF +L+D D+ SN G WQ+ A G D R Sbjct: 336 WMSNRGRQIVASCFVNELELDWRYGAAYFEQRLIDYDVGSNWGNWQYLAGVGPDPRG-GR 394 Query: 408 IFNPTIQGKRFDPQGTFIRHW 428 F+ Q +DP F+ W Sbjct: 395 HFHIKKQAALYDPNNAFVTFW 415 >gi|330915233|ref|XP_003296949.1| hypothetical protein PTT_07199 [Pyrenophora teres f. teres 0-1] gi|311330639|gb|EFQ94953.1| hypothetical protein PTT_07199 [Pyrenophora teres f. teres 0-1] Length = 655 Score = 112 bits (280), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 92/325 (28%), Positives = 138/325 (42%), Gaps = 42/325 (12%) Query: 168 NLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKV 227 N +Q D A L GP + +P + + GE AL L + + Sbjct: 199 NAIQRDGHEASYTA--LAGPNSDFAVPTMEELGLKPATTAHRGGETEALRALDEIIANEE 256 Query: 228 YY--YVEQRDIPAI---QGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWL 282 Y + + + P Q T+ LSP++ G LS R + R ++ K S Sbjct: 257 YTATFEKPKTAPTAFEPQSTTLLSPHMHFGSLSCRLFYWRAQDVVDKFKGKASQPPVSLT 316 Query: 283 NELIWREFY---RHLMAFYPSVCMGKP---FIPWTEKIEWNKDSHLL------------- 323 +L++R+ Y + + + P FIPW + + S L+ Sbjct: 317 GQLLFRDMYFGAQAALGYSFGQTYNNPNCRFIPWHLPSKIDTKSGLITGEYMVDNAEAET 376 Query: 324 --QAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQL 380 Q WK G TGFP IDA MRQL GW+H+ R A FL + +DW G E F L Sbjct: 377 HFQRWKHGQTGFPWIDALMRQLAQEGWIHHLGRHAVACFLTRGGCYIDWERGAEVFEEWL 436 Query: 381 LDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYI 440 +D + A N G WQW + T ++R ++P +++D +G F+R ++PEL +YI Sbjct: 437 IDHEAACNIGNWQWLSCTAF-FAQFYRCYSPIAFPQKWDKEGEFVRKYVPELARFDKKYI 495 Query: 441 HAPHSWLDKNDLSLNYPLPIVDHKK 465 + PH PIVD KK Sbjct: 496 YEPHK------------APIVDQKK 508 >gi|323455842|gb|EGB11710.1| hypothetical protein AURANDRAFT_6503 [Aureococcus anophagefferens] Length = 127 Score = 111 bits (278), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 55/121 (45%), Positives = 74/121 (61%), Gaps = 2/121 (1%) Query: 323 LQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLD 382 L+AW+ G TGFP++DAAMRQL GWM N +R + ASFLV+ L +DWR GE +F L+D Sbjct: 2 LRAWQLGLTGFPLVDAAMRQLWVWGWMPNYVRHVVASFLVEHLHLDWRHGEAWFHDTLVD 61 Query: 383 GDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHA 442 D A N WQ +G D + + +P K DP+G ++R W PEL +P +IH Sbjct: 62 ADAAINAFMWQNGGRSGMDQWNF--VMHPVHAAKNCDPEGDYVRRWCPELAALPRDHIHQ 119 Query: 443 P 443 P Sbjct: 120 P 120 >gi|315126037|ref|YP_004068040.1| deoxyribodipyrimidine photolyase [Pseudoalteromonas sp. SM9913] gi|315014551|gb|ADT67889.1| deoxyribodipyrimidine photolyase [Pseudoalteromonas sp. SM9913] Length = 509 Score = 111 bits (278), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 115/478 (24%), Positives = 210/478 (43%), Gaps = 48/478 (10%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 + +++VW + DLR++D++ L A N + ++ P + R F+Y S+ Sbjct: 3 IKINIVWFKRDLRLSDHQPLKNAFSNG-LPTLLIYNFEPLLLDDAHYNERHWRFVYQSIC 61 Query: 67 QVQKSLSQ-KGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEV-RRDKLLE 124 + L++ V+ ++ +D L+S Q +T LF +++ +N RD ++ Sbjct: 62 DLNTQLARFNSRVYIFN-----EDMQTLLESLHSQFEITNLFSHQEIGLNNTFERDIAIK 116 Query: 125 KRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSL-PVPAIR 183 QH I + + P G+++ +++ + + + + + P+ Sbjct: 117 AWCQHHHI-----NWLESPTGAVIRGKRNRSNWNERWQQTMQAPIAIPNWKQIKPLTLTD 171 Query: 184 LTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGT- 242 P+ PS + ++ FQ P A +++ F E+ Y + P++ T Sbjct: 172 YQTPILPSAYTQDNEH-FQHGGPRL------AREVMQSFFAERGKGYQKGISSPSLSRTH 224 Query: 243 -SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKS-----GAFSWLNELIWREFYRHLMA 296 S+LSPYL+ G +S RQ + + + K AF ++ L W + H M Sbjct: 225 CSRLSPYLAWGNISLRQVYQMAIDAYHSTSADKKGWKRPLAAF--VSRLHW---HCHFMQ 279 Query: 297 FYPSVCMG--KPFIPWTEKIEWNKDSHL---LQAWKQGYTGFPIIDAAMRQLNTIGWMHN 351 + S C K P + D+ + ++ W QG TG PIIDA MR L G+++ Sbjct: 280 KFESECTMEFKALNPGYHAFPYRDDAQVTSDIERWAQGQTGIPIIDACMRCLKATGYINF 339 Query: 352 RLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAAS-TGNDSVPYFRIFN 410 R+R + SF+ L + W+ + LD + + Q AS TG +++ R +N Sbjct: 340 RMRAMLVSFVTHHLNISWQQASFPLANYFLDFEPGIHYPQIQMQASVTGINTI---RHYN 396 Query: 411 PTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAP------HSWLDKNDLSLNYPLPIVD 462 P Q + DP G FI+ W PEL +P +Y+H P + + L +YP P++D Sbjct: 397 PIKQSEDQDPTGAFIKKWCPELEKLPIEYLHQPWEQTPMEALFNDFKLGEDYPEPMLD 454 >gi|147865945|emb|CAN80978.1| hypothetical protein VITISV_029095 [Vitis vinifera] Length = 633 Score = 111 bits (278), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 99/327 (30%), Positives = 147/327 (44%), Gaps = 62/327 (18%) Query: 179 VPAIRLTGPVTPSNIPRFFDYPFQAI--DPMFPI--GEQNALHILRKFCKEK--VYYYVE 232 +P + G SN+P + ++ I D + P GE AL LR+ ++K V + + Sbjct: 308 LPPVGDVGTCEISNVPTVKELGYEEIGQDELTPFKGGESEALKRLRESIRDKDWVANFEK 367 Query: 233 QRDIPAI---QGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWRE 289 + P+ T+ LSPYL G LS R + L + + ++ + S S + +L+WR+ Sbjct: 368 PKGDPSAFLKPATTVLSPYLKFGCLSSRYFYQCLTDVYKNVK-RHTSPPVSLVGQLLWRD 426 Query: 290 FYRHLMAFYPSVCMGKPFIP------WTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQL 343 F FY +V G P ++I WN D LL AW++ TG+P IDA M QL Sbjct: 427 F------FY-TVGFGTPNFDRMKGNRICKQIPWNDDDELLAAWREARTGYPWIDAIMVQL 479 Query: 344 NTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDS 402 GWMH+ R A FL + DL V W G + F L+D D A NNG W W + + Sbjct: 480 RKWGWMHHLARHCVACFLTRGDLFVHWEKGRDVFERLLIDSDWAINNGNWLWLSCSS--- 536 Query: 403 VPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIH----APHSWLDKND--LSLNY 456 +F + P ++P +YI+ AP S K + +Y Sbjct: 537 --FF--YQP----------------------DMPKEYIYEPWTAPPSIQXKAKCIIGKDY 570 Query: 457 PLPIVDHKKA---CHHTLNQYYAAKKQ 480 P P+V H A C L + YA K+ Sbjct: 571 PKPVVCHDSAXKECKRKLAEAYALNKR 597 >gi|332532093|ref|ZP_08407976.1| deoxyribodipyrimidine photolyase/cryptochrome family protein [Pseudoalteromonas haloplanktis ANT/505] gi|332038434|gb|EGI74878.1| deoxyribodipyrimidine photolyase/cryptochrome family protein [Pseudoalteromonas haloplanktis ANT/505] Length = 509 Score = 111 bits (278), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 115/475 (24%), Positives = 213/475 (44%), Gaps = 46/475 (9%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 +++VW + DLR++D++ L A N + ++ P + R F+Y S++++ Sbjct: 5 INIVWFKRDLRLSDHQPLKNAFSNG-LPTLLLYDFEPLLLEDAHYNERHWRFVYQSIVEL 63 Query: 69 QKSLSQ-KGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEV-RRDKLLEKR 126 L++ V+ ++ N + L+S +Q + +F +++ +N RDK+++ Sbjct: 64 NNQLARFNACVYIFNLNMN-----DLLESLKMQFEIVNIFSHQEIGLNNTFERDKVIKAW 118 Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAI-RLT 185 QH I ++ +S G+++ +++ + + + +S+ + Sbjct: 119 CQHNHI--NWQESQT---GAVIRGKKNRNNWNERWQQTMQAPIAVPNWKSIKTITLNNYQ 173 Query: 186 GPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGT--S 243 P PS + D FQ P+ +A +++ F E+ Y + P++ T S Sbjct: 174 APELPSAYTQDHD-SFQQGGPL------HARTVMQSFFAERGKGYQKGISSPSLSQTHCS 226 Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWR-EFYRHLMAFYPSVC 302 +LSPYL+ G +S RQ + +E+ K G L + R ++ H M + S C Sbjct: 227 RLSPYLAWGNISLRQVYQMAIDEYHSKH-PDKRGWKRPLAAFVSRLHWHCHFMQKFESEC 285 Query: 303 M--------GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLR 354 G P+ D ++ W QG TG PIIDA MR L G+++ R+R Sbjct: 286 SMEFLALNPGYHVFPYRNDERVKND---IERWAQGQTGIPIIDACMRCLKATGYINFRMR 342 Query: 355 MITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAAS-TGNDSVPYFRIFNPTI 413 + SF+ L + W+ + LD + + Q AS TG +++ R +NP Sbjct: 343 AMLVSFVTHHLNISWQQASFPLANYFLDFEPGIHYPQIQMQASVTGINTI---RHYNPIK 399 Query: 414 QGKRFDPQGTFIRHWLPELNNVPTQYIHAP------HSWLDKNDLSLNYPLPIVD 462 Q + DP G+FI+ W PEL +P +Y+H P + + L +YP P++D Sbjct: 400 QSEDQDPTGSFIKKWCPELEKLPIEYLHQPWEQTPMEALFNDFKLGEDYPEPMLD 454 >gi|269104335|ref|ZP_06157031.1| deoxyribodipyrimidine photolyase single-strand-specific [Photobacterium damselae subsp. damselae CIP 102761] gi|268160975|gb|EEZ39472.1| deoxyribodipyrimidine photolyase single-strand-specific [Photobacterium damselae subsp. damselae CIP 102761] Length = 436 Score = 111 bits (277), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 121/442 (27%), Positives = 186/442 (42%), Gaps = 46/442 (10%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQ-----WRQHGISARQSHFI 61 M L +NDLR+ DN AL A D +++ V+ Q + H A + F+ Sbjct: 1 MKTGLYLFQNDLRLHDNLALLNATTQCD-RLLLVYCLPYHQANRYPYHIHNYGALRLQFL 59 Query: 62 YASLLQVQK---SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVR 118 SL Q+ + L Q+ +VF H I D + + +Y Q + Sbjct: 60 LQSLHQLHQQLQDLEQELLVFLEHPLHILPQLISQYDIHTIISSEQVGYYENQTWQTLNQ 119 Query: 119 RDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLP 178 R +E K + LL + ++ ++ FR+ + + P Sbjct: 120 RYPYIE--------FKQWPTHTLLHKEQLPFDLNKLPSTFSQFRRQV------EHIELTP 165 Query: 179 VPAIRLTGPVTPSNIPR------FFDYPFQAIDPMFPIGEQNAL-HILRKFCKEKVYYYV 231 + P +P+ I F +P + F GE A+ H+ F +K Y Sbjct: 166 LTPYISHLPPSPNKIAHISILDSFISHPKPSD---FIGGEATAISHLTAYFKSDKASRYK 222 Query: 232 EQR-DIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLN-ELIWRE 289 E R D+ +++ SP+L+ G LS ++ L + + P S W+ EL+WRE Sbjct: 223 ETRNDLDGWDYSTKFSPWLAQGCLSAKRVIYELNQYHHQVDETPSS---QWIKFELLWRE 279 Query: 290 FYRHLMAFYPSVCMGKPFIPWTEKIEWNKDS---HLLQAWKQGYTGFPIIDAAMRQLNTI 346 +++ +Y K F K S + W + T +P+++A MRQL T Sbjct: 280 YFQ----WYAHHHQQKIFQFKGIKSSSPHTSFYPERFKRWSESNTPYPLVNALMRQLITT 335 Query: 347 GWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYF 406 G+M NR R I AS V +L +DWR G +F L+D D+ASN G WQ+ A G D Sbjct: 336 GYMSNRGRQIVASCFVNELELDWRYGAAFFEQHLIDYDIASNWGNWQYLAGVGADPKGN- 394 Query: 407 RIFNPTIQGKRFDPQGTFIRHW 428 R FN Q + FDPQG FI W Sbjct: 395 RHFNLDKQTELFDPQGQFITKW 416 >gi|171057933|ref|YP_001790282.1| deoxyribodipyrimidine photo-lyase [Leptothrix cholodnii SP-6] gi|170775378|gb|ACB33517.1| Deoxyribodipyrimidine photo-lyase [Leptothrix cholodnii SP-6] Length = 493 Score = 111 bits (277), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 115/497 (23%), Positives = 188/497 (37%), Gaps = 72/497 (14%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 MS +VW + DLR+TD+ L A A +A+FI P R ++ L Sbjct: 1 MSRAVVWFKRDLRVTDHAPLAEAARCDAA--LALFIIEPAWLDSPECHPRHVTWLLKCLA 58 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEIN-EVRRDKLLEK 125 ++ +L+ +G+ +++E L + + T+LF + + RD+ + + Sbjct: 59 PLRDALAARGLPLLVRT----GEAVEVLAALRREFACTRLFSHEETGPGWSYARDRAVAR 114 Query: 126 RLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185 C++ + P + + L+ + + Q + A +P Sbjct: 115 ------WCRAHGVAWTEWPQTGVIRRLKDRRGWA----GRWQQRMDAPCVRVPAGWRAAP 164 Query: 186 G--PVT-PSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIP--AIQ 240 G P T P+++P + P GE A +L+ F + Y P A Sbjct: 165 GFAPSTLPADLPTLRELGVATAPDTPPAGEAAAQQMLQSFLGGRALGYRRHLSSPLAAEA 224 Query: 241 GTSQLSPYLSIGVLSPR-------QCWNRLKEEFVDLLIKPKSGAFSWLNELI------- 286 G S+LS +L+ G LS R + + ++ +G W + Sbjct: 225 GCSRLSEHLAFGTLSLRMLHQATEATLRATSDRELAYSLRGFAGRLRWHCHFMQKLEDEP 284 Query: 287 ---WREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQL 343 WR F R P D LQAW +G TGFP++DA MRQL Sbjct: 285 AIEWRNFARSADGLRPG----------DGSALQTADRERLQAWCEGRTGFPMVDACMRQL 334 Query: 344 NTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGW-QWAASTGNDS 402 GW++ R+R + SF L + WR + Q LD + + W Q +G Sbjct: 335 RATGWLNFRMRAMLVSFAAYHLWLHWREPGLFLARQFLDFEPGIH---WSQMQMQSGTTG 391 Query: 403 VPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVD 462 + RI++P Q DPQG ++R W+PE S YP PIVD Sbjct: 392 INTLRIYSPAKQALDHDPQGEYVRRWVPEFG-------------------SAAYPAPIVD 432 Query: 463 HKKACHHTLNQYYAAKK 479 + A + Y ++ Sbjct: 433 ERAAVAAAKQRLYGLRQ 449 >gi|284035533|ref|YP_003385463.1| deoxyribodipyrimidine photo-lyase [Spirosoma linguale DSM 74] gi|283814826|gb|ADB36664.1| Deoxyribodipyrimidine photo-lyase [Spirosoma linguale DSM 74] Length = 561 Score = 111 bits (277), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 83/280 (29%), Positives = 131/280 (46%), Gaps = 29/280 (10%) Query: 201 FQAIDPMF-PIGEQNALHILRKFCKEKVYYYVEQRDIP--AIQGTSQLSPYLSIGVLSPR 257 +Q +P F P GE N L F +E++ Y P + +G S+LSPYL+ G LS R Sbjct: 234 WQRPNPSFQPGGEYNGHRYLASFLQERIALYAASISKPLASRRGCSRLSPYLAWGCLSIR 293 Query: 258 QCWNRL-----KEEFVDLLIKPKSGAFSWLNELIWREFY---RHLMAFYPSVCMGKPFIP 309 Q + K + L + + AF+ + L W + + + F Sbjct: 294 QVYQAQQQAAKKPQLAGL--RRQLAAFA--SRLRWHCHFIQKFEREERMEFENVNRAF-- 347 Query: 310 WTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDW 369 + + N + AW+ G TG+P++DA MR L G+++ R+R + SFL L W Sbjct: 348 --DAVPKNVNPDHYAAWRDGRTGYPLVDACMRCLAATGYINFRMRAMLTSFLTHHLFQHW 405 Query: 370 RIGEEYFMSQLLDGDLASNNGGWQWAAS-TGNDSVPYFRIFNPTIQGKRFDPQGTFIRHW 428 + G + D + + Q + TG +++ RI+NP Q + DPQG FI+ W Sbjct: 406 QEGGWHLARLYTDFEPGIHYAQLQMQSGMTGTNTI---RIYNPVKQSQEHDPQGVFIKQW 462 Query: 429 LPELNNVPTQYIHAP------HSWLDKNDLSLNYPLPIVD 462 +PEL N PT YIH P ++ + ++YP PI+D Sbjct: 463 VPELANCPTAYIHQPWTMPPLEQAMEHFQIGIDYPAPIID 502 >gi|149188415|ref|ZP_01866708.1| deoxyribodipyrimidine photolyase [Vibrio shilonii AK1] gi|148837633|gb|EDL54577.1| deoxyribodipyrimidine photolyase [Vibrio shilonii AK1] Length = 472 Score = 111 bits (277), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 118/440 (26%), Positives = 184/440 (41%), Gaps = 43/440 (9%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGI-----SARQSHFIYASL 65 + W +DLR+ DNK L A + D F + + + + + F +L Sbjct: 33 IYWFNHDLRLHDNKLLQKASEHVDRLHCVYFDELKTMYDRRFLPVEIDDSAKREFKMQAL 92 Query: 66 LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFY--NRQYEINEVRRDKLL 123 ++ +SL Q G V ++ D+++ L+ +T L+ + + I+ V LL Sbjct: 93 GELNQSLMQLGQVLHQVSVTSLDEAVSQLEQMFDYYSITDLYVANSASWYIDYVVTKALL 152 Query: 124 EKR--LQHRVICKSFDDSVLLP------PGSILNHALQMYKVYTPFRKALIQNLVQADLR 175 ++ + HR +S LLP P S +M + P + Q Q Sbjct: 153 KRTDIVLHRDDTESLFHQTLLPFDLEDLPHSFTRFKNKMESIVVP---SPSQTTTQ---- 205 Query: 176 SLPVPAIRLTG-PVTPSNIPRFFDYPFQAIDPMFPIGEQNAL-HILRKFCKEKVYYYVEQ 233 LP P G P + P + GE L H+ F + Y Sbjct: 206 -LPRPMNNRDGLPASYGCEPSSL-----KLHSSVRGGELAGLGHVRDYFATQAALSYKST 259 Query: 234 R-DIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGA----FSWLNELIWR 288 R ++ +++ S +L+ G +SPR N+L + K G+ + L EL+WR Sbjct: 260 RNELDNWSSSTKFSLWLANGNVSPRAVVNQLHR------FEQKHGSNESTYWILFELLWR 313 Query: 289 EFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGW 348 E++ Y + I + S L Q W +G T FPI++A M QL G+ Sbjct: 314 EYFHWYSHKYGAKLFAFGGIQDKRPLTTFYASRLRQ-WVEGNTPFPIVNACMNQLRETGY 372 Query: 349 MHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRI 408 M NR R + AS LV +L +DWR G YF L+D D+ SN G WQ+ A G D R Sbjct: 373 MSNRGRQLVASCLVHELSLDWRYGACYFQHMLIDYDVGSNWGNWQYLAGVGADPRGN-RK 431 Query: 409 FNPTIQGKRFDPQGTFIRHW 428 F+ Q + +DP+ FIR W Sbjct: 432 FDLDKQSQLYDPESVFIRKW 451 >gi|18857915|dbj|BAB85473.1| CRYPTOCHROME [Sarcophaga crassipalpis] Length = 216 Score = 110 bits (276), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 64/169 (37%), Positives = 93/169 (55%), Gaps = 9/169 (5%) Query: 313 KIEWNKDSH-LLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK-DLLVDWR 370 I W + +H LQ W QG TGFP+IDAAMRQL GW+H+ LR A+FL + L +W Sbjct: 10 NIPWAQTNHEQLQRWYQGKTGFPLIDAAMRQLLAEGWLHHTLRNTVATFLTRGGLWQNWE 69 Query: 371 IGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFN-PTIQGKRFDPQGTFIRHWL 429 G YF+ LLD D + G W W +S+ + + + P KR DP G +I+ ++ Sbjct: 70 HGLRYFLKYLLDADWSVCAGNWMWVSSSAFERLLDSSLVTCPIALAKRLDPMGQYIKQYV 129 Query: 430 PELNNVPTQYIHAPHSW---LDKND---LSLNYPLPIVDHKKACHHTLN 472 PEL NVP +YIH P + + +N + ++YP ++D A +N Sbjct: 130 PELANVPKEYIHEPWNMPINVQENSECVIGIHYPERLIDLNVASKRNMN 178 >gi|156752080|gb|ABU93792.1| cryptochrome 3 [Carassius auratus] Length = 237 Score = 110 bits (276), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 79/231 (34%), Positives = 108/231 (46%), Gaps = 16/231 (6%) Query: 211 GEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS------QLSPYLSIGVLSPRQCWNRLK 264 GE AL L K K + V + P I S LSPYL G LS R + L Sbjct: 13 GETEALERLNKHLDRKAW--VANFERPRITAQSLFASPTGLSPYLRFGCLSCRVFYYNLW 70 Query: 265 EEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSV--CMGKPFIPWTEKIEWNKDSHL 322 E ++ L + S S +L+WREF+ P+ G P +I W+ + Sbjct: 71 ELYMKLR-RSSSPPLSLFGQLLWREFFYTAGTNNPNFDHMEGNPIC---VQIPWDHNPEA 126 Query: 323 LQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLL 381 L W +G TGFP IDA M QL GW+H+ R A FL + DL + W G + F LL Sbjct: 127 LAKWAEGRTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWISWESGMKVFEELLL 186 Query: 382 DGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPEL 432 D D + N G W W + + +F + P G+R DP G +IR ++P+L Sbjct: 187 DADWSVNAGSWMWLSCSAFFQ-QFFHCYCPVGFGRRTDPSGDYIRRYIPKL 236 >gi|71023669|ref|XP_762064.1| hypothetical protein UM05917.1 [Ustilago maydis 521] gi|46101498|gb|EAK86731.1| hypothetical protein UM05917.1 [Ustilago maydis 521] Length = 623 Score = 110 bits (275), Expect = 5e-22, Method: Compositional matrix adjust. Identities = 79/247 (31%), Positives = 117/247 (47%), Gaps = 25/247 (10%) Query: 242 TSQLSPYLSIGVLSPR---QCWNRLKEEFVDLL--IKPKSGAFSWLNELIWREFYRHLMA 296 +++ L++G+LSPR Q L D K G + + EL+WR+++ + Sbjct: 326 STKFGAALALGLLSPRLIAQKATELDNATHDATHNASNKGGGYWIIFELLWRDYFYFVGW 385 Query: 297 FYPSVCMGKPFI--------PWTEKIEWNKDSHL------LQAWKQGYTGFPIIDAAMRQ 342 + S I ++ EW + L W TG P+IDA M + Sbjct: 386 KFGSKLFSLRGIEDDISARSAPSKASEWKSSASLSDRDDGFVRWCTAQTGVPLIDANMVE 445 Query: 343 LNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDS 402 + G+M NR R ASFL KDL +WR G E+F S L+D + SN G WQ+ A GND Sbjct: 446 MVQTGFMSNRGRQNVASFLTKDLGWNWRHGAEFFESWLVDYEPNSNWGNWQYVAGVGNDP 505 Query: 403 VPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAP-----HSWLDKNDLSLNYP 457 R FNP QG +D G ++ WLP L+++P QY H P +W ++ + P Sbjct: 506 RSS-RQFNPIKQGNDYDANGEYVATWLPLLSDMPPQYRHHPWTCPDAAWAEQAHSAHYPP 564 Query: 458 LPIVDHK 464 PIV+ + Sbjct: 565 TPIVEQQ 571 >gi|153831330|ref|ZP_01983997.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae 623-39] gi|148873186|gb|EDL71321.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae 623-39] Length = 180 Score = 110 bits (275), Expect = 5e-22, Method: Compositional matrix adjust. Identities = 57/157 (36%), Positives = 92/157 (58%), Gaps = 2/157 (1%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 + LVW R DLR DN AL AA ++ D V A++IATPEQW QH ++ Q+ I+ L ++ Sbjct: 1 MRLVWFRRDLRSFDNTALTAALNSGD-PVAAMYIATPEQWHQHHLAPIQADLIWRRLAEL 59 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128 Q+ L+ + Y Q ++F + + T++ NR YE++E +RD+ ++ L Sbjct: 60 QQELAALNVPLFYQQVADFQAAAVAVSQLAKTLNATQVLANRDYELDEQQRDQSAQQLLS 119 Query: 129 HRVIC-KSFDDSVLLPPGSILNHALQMYKVYTPFRKA 164 + I +FDD +LPPGS+ + +KV+TPF++A Sbjct: 120 EQGITWSAFDDKCVLPPGSVRTKQGEFFKVFTPFKRA 156 >gi|317969609|ref|ZP_07970999.1| deoxyribodipyrimidine photolyase [Synechococcus sp. CB0205] Length = 480 Score = 110 bits (275), Expect = 5e-22, Method: Compositional matrix adjust. Identities = 88/279 (31%), Positives = 133/279 (47%), Gaps = 32/279 (11%) Query: 206 PMFPIGEQNALHILRKFCK---EKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNR 262 P+ G AL L +F + + YY+ + P+ + TS LSPYL GV+SPRQC R Sbjct: 106 PIPKAGTDAALGRLDRFLEGSDSRTYYW--ELSYPSAKVTSGLSPYLKFGVVSPRQCLQR 163 Query: 263 L-------KEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIE 315 L KE ++ FS L W + P + + + + ++ Sbjct: 164 LTAAGLRAKENADRSRLRSIQQLFS---RLRWGCSIHQRFRYLPQLELRSLWSAFDQESA 220 Query: 316 WNKDS-HLLQAWKQGYTGFPIIDAAMRQL-NTIGWM--HNRLRMITASFLVKDLLVDWRI 371 + L +AWK+G TGFPI+DAA L GW+ + R R I ASFL +DWR Sbjct: 221 LSAQQIELYEAWKEGRTGFPIVDAAANCLRGGGGWLELNFRSRAIYASFLSNLCGIDWRY 280 Query: 372 GEEYFMSQLLDGDLASNNGGWQWAASTG---NDSVPYFRIFNPT-IQGKRFDPQGTFIRH 427 G +FM L+DGD ++ +QWA G + I++P + R DP G FIR Sbjct: 281 GALHFMRHLIDGDCPIDH--YQWAMQAGATYRGRKAWTPIYHPGQVAVNRCDPHGLFIRR 338 Query: 428 WLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKA 466 WLP+L + + P ++ D YP P++++++A Sbjct: 339 WLPQLERLTNDQLGEPPAFAD-------YPAPVLNYEEA 370 >gi|313228122|emb|CBY23272.1| unnamed protein product [Oikopleura dioica] Length = 168 Score = 110 bits (275), Expect = 5e-22, Method: Compositional matrix adjust. Identities = 64/166 (38%), Positives = 93/166 (56%), Gaps = 8/166 (4%) Query: 314 IEWNKD-SHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIG 372 I W+K+ L A++ TGFP +DA + +L T G + + R+ A+FL K L VDWR G Sbjct: 4 IWWSKNQKELFAAFEDARTGFPFVDAMVTELKTRGDVRHWARLCLANFLTKVLHVDWRHG 63 Query: 373 EEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPEL 432 E++F L+D D NNG WQ+ TG I+NP Q K+FD G +I+ WLP L Sbjct: 64 EKFFARHLVDYDPIVNNGNWQYCGGTGTGIAHRPDIYNPWNQSKKFDKNGEYIQKWLPFL 123 Query: 433 NNVPTQYIHAPHSWLDKNDL----SLNYPLPIVDHKKACHHTLNQY 474 V ++HA W DK+ L L+Y P+V++ KA ++L + Sbjct: 124 AKVGPAHLHA---WEDKHKLYNLSKLDYVKPVVEYAKAREYSLKMF 166 >gi|294339498|emb|CAZ87857.1| putative Deoxyribodipyrimidine photo-lyase [Thiomonas sp. 3As] Length = 493 Score = 110 bits (275), Expect = 5e-22, Method: Compositional matrix adjust. Identities = 121/490 (24%), Positives = 193/490 (39%), Gaps = 63/490 (12%) Query: 8 SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67 ++ LVW + DLR+ D+ AL+AA +A+F+ PE A+ F + Sbjct: 3 TLALVWFKRDLRVQDHAALHAA--AQCDAALALFVMEPEWIASPECDAQHVQFAADCVSA 60 Query: 68 VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEIN-EVRRDKLLEKR 126 +Q+SL+ G+ D + + + R T LF + + RDK R Sbjct: 61 LQESLAGLGLRL----LVRVGDVPQVFEDIRREVRFTHLFSHEETGPGWTYARDK----R 112 Query: 127 LQHRVICKSFDDSVLL---PPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVP-AI 182 + H C+ + V+ P ++ +++ + D LPVP A+ Sbjct: 113 VAH--WCR--EQGVIWQEWPQNGVVRRLRDRAGWAARWQRRM-------DAPQLPVPQAL 161 Query: 183 R-LTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIP--AI 239 R + P+ + P D A PM G AL L F + Y P A Sbjct: 162 RDASKPLAAGDFPALRDLRLPAARPMSAAGTAAALSTLHSFLDTRGAQYRRDLSSPLTAE 221 Query: 240 QGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFS-------WLNELIWREFYR 292 +G S+LS +L+ G LS RQ ++ L ++ A S + L W + Sbjct: 222 RGCSRLSAHLAFGTLSMRQVHQATEQRIRALQASGEAPARSMAYHLRGFAGRLRWHCHFM 281 Query: 293 HLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNR 352 + P + + E + +AW G TGFP++DA MR LN GW++ R Sbjct: 282 QKLEDEPGIEFHNFARAYDGLREPEFNPAYFEAWCSGNTGFPMVDACMRCLNATGWINFR 341 Query: 353 LRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAA---STGNDSVPYFRIF 409 +R + SF L + WR + Q LD + G W+ +G + R++ Sbjct: 342 MRAMLVSFAAYHLWLHWREPGLHLARQFLDFE-----PGIHWSQMQMQSGTTGINTLRVY 396 Query: 410 NPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHH 469 +P Q DPQG FIR W+PE YP PIV+ + A Sbjct: 397 SPAKQQADHDPQGEFIRQWVPEWGTS-------------------AYPPPIVNERSAVKQ 437 Query: 470 TLNQYYAAKK 479 ++ YA ++ Sbjct: 438 AKDRIYAIRQ 447 >gi|310791128|gb|EFQ26657.1| DASH family cryptochrome [Glomerella graminicola M1.001] Length = 705 Score = 110 bits (274), Expect = 6e-22, Method: Compositional matrix adjust. Identities = 140/548 (25%), Positives = 220/548 (40%), Gaps = 101/548 (18%) Query: 5 TAMSVHLVWLRNDLRITDNKALYAACHNSD---AKVIAVFI------------------A 43 TA ++ + R+DLRI DN ++ SD V+ +++ Sbjct: 2 TATNILIYLFRHDLRIADNPIIHHLSTASDHGFTHVLPIYVFPAHQIEISGFLREGSKSP 61 Query: 44 TPEQWRQHG----ISARQSHFIYASLLQVQKSLS--QKGIVFQYHQCSNFDDSIEWLDSY 97 PE Q G ++ F+ S+ +++SL G+ + + + D + L S+ Sbjct: 62 YPEARSQIGKFWRCGPHRTKFVAQSVWNLKESLESVHSGLALRAGKFGDVVDDL--LRSF 119 Query: 98 C-LQQRVTKLFYNRQYEINEVRRDKLLEKRLQ-HRVICKSFDDSVLLPPGSILN--HALQ 153 +Q+V ++ + + E R +K + + H V K++ D L+ + Sbjct: 120 ADKKQKVGAVWMTAEESVEEKRDEKAVSAACEKHGVAFKTWTDEKYFIDDRDLHFESPSE 179 Query: 154 MYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV----------TPSNIPRFFDY---- 199 + V+T FRK + L + +LP P P TP IP +D Sbjct: 180 LADVFTAFRKTQ-EPLREKPRPTLPHPKKGSLPPYPDQSIIPPQRTPFQIPSTYDALEAA 238 Query: 200 -------PFQAIDPMFP----------IGEQNALHILRKFCKE-KVYYYVEQR-DIPAIQ 240 PF +P FP GE A+ L K V Y + R ++ + Sbjct: 239 LLKPLKSPFNE-EPKFPENAKSVHPFKGGEDFAIERLEHLVKTGSVSSYKDTRNEMLGVD 297 Query: 241 GTSQLSPYLSIGVLSPRQCWNRLK--EEFVDLLIKPKSGAFSWLN--------ELIWREF 290 +++LS YL++G L+ RQ L E+ D K G N EL+WR++ Sbjct: 298 FSTKLSAYLALGCLTSRQIHEALVKYEDGQDDRFKETPGYGKGENDGTKAVRFELLWRDY 357 Query: 291 YR-HLMAFYPSV-CMGKPFIPWTEKIEWNKDSH----------------LLQAWKQGYTG 332 R M F + C+ T K + H +LQ + G TG Sbjct: 358 MRLCTMKFGAKLFCVTGFKNDTTPKWKSADPEHVVSEDNLGTPVDDVQKILQRFLNGTTG 417 Query: 333 FPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGW 392 +IDA+ R+L G+ NR R ASFL K L +DWR G E++ L+D D+ SN W Sbjct: 418 MGLIDASQRELYHTGYTSNRARQNVASFLTKHLGIDWRYGAEWYEYLLVDYDVNSNWSNW 477 Query: 393 QWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPT-----QYIHAPHSWL 447 Q+ A GND RIFNP Q +D G +++ W+ E V Q P L Sbjct: 478 QYVAGVGNDPRGDNRIFNPVKQAFDYDKTGEYVKAWVVETREVENLENVFQLWTTPQEEL 537 Query: 448 DKNDLSLN 455 ++ LS N Sbjct: 538 ERLGLSKN 545 >gi|328470041|gb|EGF40952.1| deoxyribodipyrimidine photolyase [Vibrio parahaemolyticus 10329] Length = 338 Score = 110 bits (274), Expect = 7e-22, Method: Compositional matrix adjust. Identities = 77/235 (32%), Positives = 114/235 (48%), Gaps = 28/235 (11%) Query: 207 MFPIGEQNAL-HILRKFCKEKVYYYVEQRD-IPAIQGTSQLSPYLSIGVLSPRQCWNRLK 264 +F GE + L H R F Y E R+ + + +++ SP+L++G +SPR + LK Sbjct: 91 LFSGGEWSGLAHCRRYFSSGLASSYKETRNGLDGMAYSTKFSPWLALGCVSPRMIYAMLK 150 Query: 265 EEFVDLLIKPKSGAFSWLN----ELIWREF-------YRHLMAFYPSVCMGKPFIPWTEK 313 + + GA N EL+WRE+ Y+ + + + P + Sbjct: 151 Q------YEQTQGANDSTNWIYFELLWREYFYWYARCYQQRLFRFGGIRNQPPLTSFY-- 202 Query: 314 IEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGE 373 +H Q WK G T + I++A M QLN G+M NR R + AS LV +L +DWR G Sbjct: 203 ------AHRFQQWKNGTTPYLIVNACMHQLNHTGYMSNRGRQLVASCLVHELGLDWRYGA 256 Query: 374 EYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHW 428 +F +QL+D D+ SN G WQ+ A G D R FN Q + +DP FI W Sbjct: 257 AHFETQLIDYDVGSNWGNWQYLAGVGADPRGS-RQFNLEKQTQMYDPNHEFIERW 310 >gi|323455593|gb|EGB11461.1| hypothetical protein AURANDRAFT_20741 [Aureococcus anophagefferens] Length = 529 Score = 110 bits (274), Expect = 7e-22, Method: Compositional matrix adjust. Identities = 83/260 (31%), Positives = 124/260 (47%), Gaps = 25/260 (9%) Query: 242 TSQLSPYLSIGVLSPRQCWNRLKEEFVDLL-IKPKSGAFSWLNELIWREF-----YRHLM 295 T+ LSPYL G +S R RL + + +P + S L +L +RE +H Sbjct: 255 TTVLSPYLKFGCVSARLFRARLADVYAGGSHAQPPT---SLLGQLYFREMAYANALKHGA 311 Query: 296 AFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRM 355 AF S IPW + + L+AW+ G TG+P +DAAMRQL GW+H+ R Sbjct: 312 AFAASPSPVCADIPWDDPATDAAAAARLRAWEAGETGYPFVDAAMRQLRETGWIHHLARH 371 Query: 356 ITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQ 414 A FL + DL + W G F LLD D A NN W A + S P+FR+++P Sbjct: 372 AVACFLTRGDLWLPWTEGARVFDRDLLDADWAVNNFNWLGLAGVASWSPPFFRVYSPVPN 431 Query: 415 GKRF-----DPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSL--------NYPLPIV 461 K+ D G ++ ++PEL +P +Y +AP W + YP P+V Sbjct: 432 HKQSSLNVDDAAGAYVDRFVPELRKLPAKYKYAP--WTAPAAVLAAAGVVLGDTYPRPLV 489 Query: 462 DHKKACHHTLNQYYAAKKQS 481 DHK + ++ A++++ Sbjct: 490 DHKVQSKDNIARFKEAQQRN 509 >gi|159043774|ref|YP_001532568.1| deoxyribodipyrimidine photo-lyase [Dinoroseobacter shibae DFL 12] gi|157911534|gb|ABV92967.1| deoxyribodipyrimidine photo-lyase [Dinoroseobacter shibae DFL 12] Length = 514 Score = 109 bits (273), Expect = 9e-22, Method: Compositional matrix adjust. Identities = 83/285 (29%), Positives = 125/285 (43%), Gaps = 28/285 (9%) Query: 211 GEQNALHILRKFCKEKVYYYVEQRDIP--AIQGTSQLSPYLSIGVLSPRQCWNR--LKEE 266 G AL +L F E+ Y P + S+LSP+L++G LS R+ +++ Sbjct: 192 GRDEALSLLGGFLTERGRTYRAAMANPLDGAEACSRLSPHLALGTLSGREAVQAAAMRKA 251 Query: 267 FVDLLIKPKSGAF-SWLNELIWREFYRHLMAFYPSV---CMG------KPFIPWTEKIEW 316 V GA S+ L WR+ + + P + C+ +P +P Sbjct: 252 EVKGTRDGWIGAMKSFEARLAWRDHFMQKLEDAPRLEHACLHSAYEGLRPAVP------- 304 Query: 317 NKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYF 376 D L AW +G TG P +DA MR L GW++ R R + + L +DWR Sbjct: 305 --DPVRLGAWAKGETGLPFVDACMRSLIATGWLNFRARAMLVAVASYHLWLDWRASGTIL 362 Query: 377 MSQLLDGDLASNNGGW-QWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNV 435 D + + W Q +G + RI+NP QG DP+G F R WLPEL V Sbjct: 363 GRYFTDFEPGIH---WPQVQMQSGTTGMNTVRIYNPVKQGHDNDPEGVFTRRWLPELAEV 419 Query: 436 PTQYIHAPHSWLDKND-LSLNYPLPIVDHKKACHHTLNQYYAAKK 479 P +Y+ P W + L+ YP PIV+ K A ++ +A ++ Sbjct: 420 PDRYLQEPWRWEGADSVLNRTYPAPIVEPKAAAAAARDKVWAVRR 464 Score = 42.7 bits (99), Expect = 0.14, Method: Compositional matrix adjust. Identities = 23/66 (34%), Positives = 35/66 (53%), Gaps = 2/66 (3%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 LVW + DLR+ D+ AL A + V+ V+I PE W+ +SARQ F + + + Sbjct: 8 LVWFKRDLRVADHPALARAA--ALGPVLPVYIVEPEYWQLRDVSARQWAFTRECVADLSR 65 Query: 71 SLSQKG 76 L+ G Sbjct: 66 ELAALG 71 >gi|284799906|ref|ZP_05985171.2| deoxyribodopyrimidine photolyase [Neisseria subflava NJ9703] gi|284796575|gb|EFC51922.1| deoxyribodopyrimidine photolyase [Neisseria subflava NJ9703] Length = 428 Score = 109 bits (273), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 117/454 (25%), Positives = 192/454 (42%), Gaps = 57/454 (12%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 LVW R +LR+ DN AL AA S + V+++ Q + RQS F Y + ++ Sbjct: 24 LVWFRRNLRLHDNAALNAAV-ASGLPITCVWVS---QRPSENHNPRQSLFHYQAAQELHT 79 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL-QH 129 L+ I + ++ +D + + +T + Y E+R+D L Q Sbjct: 80 RLAAHHIPL--YVVASDEDLLPLAAALNAHTVIT----DEAYTEAEIRQDNHLWHNFDQA 133 Query: 130 RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189 + + +D +L +++ Y + +++A +Q +P Sbjct: 134 GIALQHANDRGILAKSPLMDANGLPYTDFAAYKQAWLQAYSGQRPSETKLPV------QI 187 Query: 190 PSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYL 249 N+P F + + GE AL F + V+Y + Q + PA + TS L+ YL Sbjct: 188 GQNVPLFPAHTGAVLPAYQQSGETAALTQWHAFKQNLVHYPITQ-NFPARKNTSLLNAYL 246 Query: 250 SIGVLSPRQCWNRLKEEFVDLLIKPKSGA---FSWLNELIWREFYRHLMAFYPSVCMGKP 306 S G +SPR L+ +S A F WL++LI+R+ Y + +A++ + Sbjct: 247 SAGCISPR-------------LLAAESLANRHFEWLDKLIFRD-YCYQLAYHRRLPETTD 292 Query: 307 FIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLL 366 P E W+ G TG PIIDA++R L G +H L+ + A + L Sbjct: 293 AAPVREY------------WRHGQTGVPIIDASIRGLEATGHLHPVLQQLCAHYFCHALN 340 Query: 367 VDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIR 426 D G + S D A N W AA +V Y + + DP G++IR Sbjct: 341 FDPNQGIAWTASVQTGTDPALNQANWHLAAQ-DTATVRYAH------RSHQIDPDGSYIR 393 Query: 427 HWLPELNNVPTQYIHAPHSWLDKNDLSLN-YPLP 459 +LPEL ++P+ IH P W +D+ + YP P Sbjct: 394 SYLPELAHLPSTLIHTP--WAAADDIDTHGYPFP 425 >gi|156383455|ref|XP_001632849.1| predicted protein [Nematostella vectensis] gi|156219911|gb|EDO40786.1| predicted protein [Nematostella vectensis] Length = 513 Score = 109 bits (272), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 122/494 (24%), Positives = 198/494 (40%), Gaps = 71/494 (14%) Query: 13 WLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQKSL 72 W R DLR+ DN AL + N A V+ P ++ +S + F+ SL + +L Sbjct: 21 WFRKDLRLHDNPALLESFKNCQA-FYGVYFLDPASVQRSNLSPNRWWFLLESLRDLDYNL 79 Query: 73 SQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKL---LEKRLQH 129 G + + + LD Q + +L E +RD + L K L Sbjct: 80 RSLGSRLLVVRGQPVQEMPKLLD----QWNIKRLTLEYDSEPPAKQRDAVVTHLAKNLGV 135 Query: 130 RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRK-------ALIQNLVQADLRSLPVPAI 182 VI + ++H L Y V T + A+ P P Sbjct: 136 EVIQR-------------VSHTL--YDVETVLETNDGKLPMTFDEMAKTAEQLGPPCPPC 180 Query: 183 RLTG---------PVTPS-----NIPRFFDYPFQAIDPM-----FPIGEQNALHILRKFC 223 + PV P +P ++ + + + GE AL L Sbjct: 181 QTVDKTVFGACLTPVGPDHADKYGVPLLSEFGMKELKEATAKKYWTGGEPEALRRLSAAL 240 Query: 224 KEKVYYYVEQRD---IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFS 280 K+ E+R + LSPY+ G LSPR + +L ++ K + Sbjct: 241 KKCAENDFEERGWTIDEMFSNDAHLSPYMRFGCLSPRLYYQQLALTYMK--EKKSIPPAT 298 Query: 281 WLNELIWREFYRHLMAFYPSV--CMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDA 338 L+ RE + H+ + + + P + + W ++ L+ WK+G TGFP IDA Sbjct: 299 LFTGLVRRELFLHVASHNADLDKMLDNPL---SVQFPWEENKEGLERWKEGKTGFPWIDA 355 Query: 339 AMRQLNTIGWMHNRLRMITASFLVKDLL-VDWRIGEEYFMSQLLDGDLASNNGGWQWAAS 397 MRQL GW+H+ R FL + L V W G + F LD + + N W W + Sbjct: 356 IMRQLREEGWIHHLARQAVGCFLTRGCLWVSWEEGFKAFDELQLDAEWSLNASNWLWLSC 415 Query: 398 TG--NDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYI----HAPHSWLD--K 449 + + +VP+ + P GK+ DP G +I+ ++PE+ +P++Y+ +AP S + Sbjct: 416 SSYVHGAVPW---YCPVEVGKKVDPTGDYIKRYVPEVRGLPSEYVCEPWNAPLSVQKACR 472 Query: 450 NDLSLNYPLPIVDH 463 + +YP PIVDH Sbjct: 473 CVVGEDYPSPIVDH 486 >gi|312211632|emb|CBX91717.1| hypothetical protein [Leptosphaeria maculans] Length = 709 Score = 109 bits (272), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 87/309 (28%), Positives = 134/309 (43%), Gaps = 40/309 (12%) Query: 184 LTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYY--YVEQRDIPAI-- 239 L GP +P + + GE AL L K + Y + + + P Sbjct: 259 LAGPNGDFAVPTMKELGLKLATSTHRGGETLALEALEKIIANEEYTATFEKPKTAPTAFE 318 Query: 240 -QGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFY---RHLM 295 Q T+ LSP+L G LS R+ + R+++ K S +L++R+ Y + + Sbjct: 319 PQATTLLSPHLHFGSLSCREFYWRVQDVVDRFKGKASQPPTSLTGQLLFRDMYFGAQAAL 378 Query: 296 AFYPSVCMGKP---FIPWTEKIEWNKDSHL---------------LQAWKQGYTGFPIID 337 + S P FIPW + + S + + WK+G TGFP ID Sbjct: 379 GYSFSQTYNNPQCRFIPWHLPSKIDIKSSMTTGEYLVDDAEAEIHFKRWKEGCTGFPWID 438 Query: 338 AAMRQLNTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAA 396 A MRQL GW+H+ R A FL + +DW G E F L+D + A N G WQW + Sbjct: 439 ALMRQLKREGWIHHLGRHAVACFLTRGGCYIDWERGAEVFEEWLIDHEAACNIGNWQWLS 498 Query: 397 STGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNY 456 T +FR ++P +++D +G F++ ++PEL +YI+ P + Sbjct: 499 CTAF-FAQFFRCYSPIAFPQKWDKEGEFVKRYVPELAKFDKKYIYEP------------W 545 Query: 457 PLPIVDHKK 465 PI D KK Sbjct: 546 KAPIADQKK 554 >gi|20336481|gb|AAM19303.1| cryptochrome-2 [Gallus gallus] Length = 266 Score = 108 bits (271), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 56/160 (35%), Positives = 86/160 (53%), Gaps = 8/160 (5%) Query: 313 KIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK-DLLVDWRI 371 +I W+K+ L W +G TGFP IDA M QL GW+H+ R A FL + DL + W Sbjct: 10 QIPWDKNPEALAKWAEGKTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWISWES 69 Query: 372 GEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPE 431 G F LLD D + N G W W + + +F + P G+R DP G +++ +LP+ Sbjct: 70 GVRVFDELLLDADFSVNAGSWMWLSCSAFFQQ-FFHCYCPVGFGRRTDPSGDYVKRYLPK 128 Query: 432 LNNVPTQYIHAPHSWLD------KNDLSLNYPLPIVDHKK 465 L P++YI+ P + + K + ++YP P+V+H + Sbjct: 129 LKGFPSRYIYEPWNAPESVQKAAKCIIGVDYPKPMVNHAE 168 >gi|330951090|gb|EGH51350.1| deoxyribodipyrimidine photolyase [Pseudomonas syringae Cit 7] Length = 108 Score = 108 bits (271), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 52/96 (54%), Positives = 66/96 (68%), Gaps = 1/96 (1%) Query: 381 LDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYI 440 +DGDLASNNGGWQW++STG DS PYFRIFNP Q +RFDP+G FI+ WLPEL ++ + I Sbjct: 1 IDGDLASNNGGWQWSSSTGTDSAPYFRIFNPLSQSERFDPEGVFIKRWLPELADLNKKQI 60 Query: 441 HAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYA 476 H P S + + +YP PIVD K+ L + A Sbjct: 61 HDP-SLIGDLFGAADYPKPIVDLSKSRARALAAFKA 95 >gi|189188250|ref|XP_001930464.1| cryptochrome-2 [Pyrenophora tritici-repentis Pt-1C-BFP] gi|187972070|gb|EDU39569.1| cryptochrome-2 [Pyrenophora tritici-repentis Pt-1C-BFP] Length = 655 Score = 108 bits (271), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 87/309 (28%), Positives = 131/309 (42%), Gaps = 40/309 (12%) Query: 184 LTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYY--YVEQRDIPAI-- 239 L GP +P + + GE AL L + + Y + + + P Sbjct: 213 LAGPNGDFAVPTMEELGLKPATTAHRGGETEALRALDEIIANEEYTATFEKPKTAPTAFE 272 Query: 240 -QGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFY---RHLM 295 Q T+ LSP++ G LS R + R ++ K S +L++R+ Y + + Sbjct: 273 PQSTTLLSPHMHFGSLSCRLFYWRAQDVVDKFKGKASQPPVSLTGQLLFRDMYFGAQAAL 332 Query: 296 AFYPSVCMGKP---FIPWTEKIEWNKDSHLL---------------QAWKQGYTGFPIID 337 + P FIPW + + S L+ Q WK G TGFP ID Sbjct: 333 GYSFGQTYNNPNCRFIPWHLPSKIDTKSGLITGEYMVDNAEAEAHFQRWKHGQTGFPWID 392 Query: 338 AAMRQLNTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAA 396 A MRQL GW+H+ R A FL + +DW G E F L+D + A N G WQW + Sbjct: 393 ALMRQLAQEGWIHHLGRHAVACFLTRGGCYIDWERGAEVFEEWLIDHEAACNIGNWQWLS 452 Query: 397 STGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNY 456 T ++R ++P +++D +G +R ++PEL +YI+ PH Sbjct: 453 CTAF-FAQFYRCYSPIAFPQKWDKEGKLVRKYVPELAKFDKKYIYEPHK----------- 500 Query: 457 PLPIVDHKK 465 PIVD KK Sbjct: 501 -APIVDQKK 508 >gi|293321543|emb|CAZ66367.1| cryptochrome [Suberites domuncula] Length = 517 Score = 108 bits (270), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 78/279 (27%), Positives = 128/279 (45%), Gaps = 52/279 (18%) Query: 211 GEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRL------- 263 GE AL L FC + + + + LSPY+ G LS RQ +++L Sbjct: 238 GETEALSRLSSFCSRRAA--IPNEPVHWLMSKDTLSPYIKFGCLSVRQLFSQLLQFASTS 295 Query: 264 --KEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYP--------SVCMGKPFIPWTEK 313 +E +LL K L+ REF + + P S+C+ P Sbjct: 296 SKGQELFELLTK----------NLLLREFAFLVGSSSPKFDVMEGNSLCIQLP------- 338 Query: 314 IEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLL-VDWRIG 372 W ++ +QA++ G TG+P IDA +RQ+ GW H R A FL + L + W +G Sbjct: 339 --WESNNVFIQAFRNGQTGYPWIDAIIRQIRQDGWAHFLARQSIAVFLTRGYLWISWVLG 396 Query: 373 EEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPEL 432 +E+F ++D +L ++ W ++ +G ++P + GK+ D G +I+ ++PEL Sbjct: 397 KEFFQEFMIDFELPVSSVCWMQSSCSGFFCT-QIESYDPCLVGKQIDTDGHYIKTYVPEL 455 Query: 433 NNVPTQYIHAP---------HSWLDKNDLSLNYPLPIVD 462 + P++Y+H P SWL + YP PI+D Sbjct: 456 KDFPSEYVHQPWKCSSLHTEASWLCDRE---QYPKPIID 491 >gi|90085022|dbj|BAE91252.1| unnamed protein product [Macaca fascicularis] Length = 278 Score = 108 bits (270), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 62/165 (37%), Positives = 87/165 (52%), Gaps = 8/165 (4%) Query: 309 PWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK-DLLV 367 P +I W+K+ L W +G TGFP IDA M QL GW+H+ R A FL + DL + Sbjct: 5 PICVQIPWDKNPEALAKWAEGRTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWI 64 Query: 368 DWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRH 427 W G + F LLD D + N G W W S + +F + P G+R DP G +IR Sbjct: 65 SWEEGMKVFEELLLDADWSINAGSWMW-LSCSSFFQQFFHCYCPVGFGRRTDPNGDYIRR 123 Query: 428 WLPELNNVPTQYIHAPHSW------LDKNDLSLNYPLPIVDHKKA 466 +LP L P +YI+ P + + K + +NYP P+V+H +A Sbjct: 124 YLPVLRGFPAKYIYDPWNAPEGIQKVAKCLIGINYPKPMVNHAEA 168 >gi|320589803|gb|EFX02259.1| DNA photolyase [Grosmannia clavigera kw1407] Length = 893 Score = 108 bits (270), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 50/132 (37%), Positives = 78/132 (59%), Gaps = 6/132 (4%) Query: 307 FIPWTEKIEWNKD------SHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASF 360 F P + +W+++ ++ L+ W+ G TG +IDA+ R+L G+ NR RM+ ++F Sbjct: 458 FSPRADMADWDQEQSPEQTANYLRRWQLGTTGLSLIDASQRELMYTGFTSNRARMVVSNF 517 Query: 361 LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDP 420 K + +DWR G E++ L+D D+ SN G WQ+AA GND R NP Q +DP Sbjct: 518 FAKRMQIDWRCGAEWYEMMLMDYDVYSNWGNWQYAAGVGNDPRGIERDLNPVKQAFDYDP 577 Query: 421 QGTFIRHWLPEL 432 +G ++R WLPE+ Sbjct: 578 KGLYVRAWLPEV 589 >gi|145605082|ref|XP_365369.2| hypothetical protein MGG_02071 [Magnaporthe oryzae 70-15] gi|145012947|gb|EDJ97588.1| hypothetical protein MGG_02071 [Magnaporthe oryzae 70-15] Length = 614 Score = 108 bits (270), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 132/497 (26%), Positives = 197/497 (39%), Gaps = 103/497 (20%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYAS------ 64 + W R DLR+ D+ AL AA A + +F P H++Y S Sbjct: 7 IYWFRTDLRLHDSPALQAALDLDPAVLWPIFTWDP-------------HYVYRSRGGLNR 53 Query: 65 ---LLQVQKSLS---------QKGIVFQYHQCSNFDDSIE-WLDSYCLQQRVTKLFYNRQ 111 LL Q LS K V + S F + W +VT L + + Sbjct: 54 WQYLLDCQNDLSASITNLNPRSKLFVLREAPQSLFPKLFKAW--------KVTHLVFEKD 105 Query: 112 YEINEVRRDKLLEKRLQH---RVICK---SFDDSVLLPPGSILNHALQMYKVYTPFRKAL 165 + +RD++++K Q +VI + + DS + + + M ++ T Sbjct: 106 TDAYARQRDEVVKKAAQAAGVKVITRYGRTLWDSDAIVKANGGEPTMSMARLRT------ 159 Query: 166 IQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKE 225 V A + S+P P P +P F+ P Q+ R KE Sbjct: 160 ----VGAKVGSIPRPIPAPKALPDPGEMPLDFNLDL-------PDVGQDYNAKWRSEGKE 208 Query: 226 KVYYYVEQRDIP-AIQGTSQL------SPYLSIGVLSPRQCWNRLK-EEFVDLLIKPKSG 277 K Y + + AI+ +L +PY L+ R+ ++ ++ VD + K Sbjct: 209 KAYGAIAGPNGDFAIETLEELGYPPATTPYKGGESLALRELDAIIENQDTVDAYNQAKKK 268 Query: 278 AFSWLNELIWREFYRHLMAFYPSVCMGK-----------PFIPW---------------T 311 S E + + M F +G FIPW Sbjct: 269 GASLPPESLTGQLLFRDMYFAAQAAIGPCFSQTAGNAHCRFIPWHLPSHVEDNAVSGQVL 328 Query: 312 EKIEWNKDSHLLQAW----KQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD-LL 366 K E+ DS ++W + G TGFP IDA MRQL GW+H+ R A FL + Sbjct: 329 RKFEYEVDSEQAESWFRRWEAGQTGFPWIDALMRQLRVEGWIHHLGRHSVACFLTRGGCY 388 Query: 367 VDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIR 426 V W G + F LLD + A N G WQW + T S YFR ++P GK++DP GTFIR Sbjct: 389 VSWERGLDVFEELLLDHEPACNAGNWQWLSCTAFFSQ-YFRCYSPISFGKKWDPDGTFIR 447 Query: 427 HWLPELNNVPTQYIHAP 443 W+PEL ++ +YI+ P Sbjct: 448 KWVPELASLDKKYIYEP 464 >gi|260772995|ref|ZP_05881911.1| deoxyribodipyrimidine photolyase/cryptochrome family protein [Vibrio metschnikovii CIP 69.14] gi|260612134|gb|EEX37337.1| deoxyribodipyrimidine photolyase/cryptochrome family protein [Vibrio metschnikovii CIP 69.14] Length = 492 Score = 108 bits (269), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 117/472 (24%), Positives = 200/472 (42%), Gaps = 42/472 (8%) Query: 1 MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHF 60 M +TT S+++VW + DLR++D+ L AA +S + V+ P S R F Sbjct: 1 MMSTT--SINIVWFKRDLRLSDHPPLCAAL-DSGIPTLLVYFFEPMLLNDRHYSERHWRF 57 Query: 61 IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIE-WLDSYCLQQRVTKLFYNRQYE-INEVR 118 ++ SL + + L+ G HQ + S E L + + L+ +++ +N Sbjct: 58 VWQSLQDINQQLASFG-----HQILIANVSAEQGLATLAAHFSIQGLYSHQEVGLVNTFE 112 Query: 119 RDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLP 178 RD ++ + I S+ S G++ A ++ + L ++ + Sbjct: 113 RDIAIQHWCTEQGI--SWHQSAY---GAVRRAATHRQGWDKHWQAIMRAPLAMPNITTQG 167 Query: 179 VPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPA 238 + ++ T +N+P + + + GE A L F + + Y Q P+ Sbjct: 168 LISVCATDLGLDNNVPSAWRRKEKGLQTG---GETLAKQTLEDFFQRRAKNYYFQISSPS 224 Query: 239 IQ--GTSQLSPYLSIGVLSPRQC-------WNR--LKEEFVDLLIKPKSGAFSWLNELIW 287 + S++SPYL+ G +S R+ WN L+ + L + W I Sbjct: 225 LARLSCSRMSPYLAWGNISLREMYQTLLSYWNAAGLRRSLIAL-----ASRLHWHCHFIQ 279 Query: 288 REFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIG 347 + M F C+ + + P + D+ LL+AWK G TG P++DA MR L G Sbjct: 280 KFESECEMEFR---CVNRAYEPLLAQ-ACQPDTELLEAWKSGQTGIPLVDACMRCLYHTG 335 Query: 348 WMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFR 407 +++ R+R + S L + +WR G + LD + + +Q A G + R Sbjct: 336 YLNFRMRAMLVSVLTHHMNQNWRAGVGHLAQLFLDFEPGIHYAQFQMQA--GVTGINTIR 393 Query: 408 IFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLP 459 I+NP Q + D QG FIR W+PEL VP + P W ++ Y LP Sbjct: 394 IYNPIKQAQEHDAQGVFIRQWVPELAEVPLSLLFEP--WQMSPMEAMMYQLP 443 >gi|171684045|ref|XP_001906964.1| hypothetical protein [Podospora anserina S mat+] gi|170941983|emb|CAP67635.1| unnamed protein product [Podospora anserina S mat+] Length = 813 Score = 108 bits (269), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 56/141 (39%), Positives = 81/141 (57%), Gaps = 5/141 (3%) Query: 320 SHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQ 379 + +L+ + G TG +IDA+ R+L G+ NR R ASFL K L +DWR G E++ Sbjct: 499 AKILERFNLGTTGMGLIDASQRELLHTGYTSNRARQNVASFLAKHLDIDWRYGAEWYEML 558 Query: 380 LLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPT-- 437 L+D D++SN WQ+ A GND + RIFNP QG +DP G+++R W+PE++ + Sbjct: 559 LVDYDVSSNWANWQYVAGVGNDPRGHMRIFNPVKQGFEYDPSGSYVRTWIPEVSGLEKLE 618 Query: 438 ---QYIHAPHSWLDKNDLSLN 455 Q A L+K LS N Sbjct: 619 NAFQPWTASKEELEKTGLSGN 639 >gi|163756026|ref|ZP_02163142.1| putative deoxyribodipyrimidine photolyase [Kordia algicida OT-1] gi|161323900|gb|EDP95233.1| putative deoxyribodipyrimidine photolyase [Kordia algicida OT-1] Length = 495 Score = 108 bits (269), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 122/491 (24%), Positives = 210/491 (42%), Gaps = 52/491 (10%) Query: 1 MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHF 60 M + +++V + DLR+ DN+A++ A ++ K + +F+ S R +F Sbjct: 1 MNTQNKIEINVVLFKRDLRLQDNEAIHNAL-STGKKTLLLFVFEDILLNDPHYSERHWNF 59 Query: 61 IYASLLQVQKSL----SQKGIVFQYHQCSNFDDSIEWL-DSYCLQQRVTKLFYNRQYEIN 115 I SL+ + SL S+ IV SN + +++ + ++Y ++T LF +++ I Sbjct: 60 IKESLIDLNNSLIAYNSEILIV-----RSNINRTLQIIQETY----KITHLFSHQETGIK 110 Query: 116 EV-RRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADL 174 RDK+L++ L + +I +I N + + T + + +N + L Sbjct: 111 VTYDRDKMLKRFLANNMITWV---------ENINNGVFRGLQDRTDWIEKW-ENFMNQPL 160 Query: 175 RSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDP--MFPIGEQN-ALHILRKFCKEKVYYYV 231 S +L ++ FF P +P +F G AL F +++ Y Sbjct: 161 LSFLPKKDQLFTKKEVQHLASFFHVPSLETNPDTLFQKGGTTMALKYKNTFFRDRGKNYN 220 Query: 232 EQRDIP--AIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPK-----SGAFSWLNE 284 P A + S+LSPYL+ G LS R+ ++ I PK W Sbjct: 221 HHISKPLLARRSCSRLSPYLAWGNLSVREVIQETTR-CIEQNIYPKQMESFGSRLRWQAH 279 Query: 285 LIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLN 344 I + M F V + K + K++ ++AWK G TG+P++DA MR L Sbjct: 280 FIQKFEMEDEMEF---VSINKGY----RKLKKRVSERYIEAWKNGMTGYPLVDACMRCLK 332 Query: 345 TIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVP 404 G+++ R+R + SF +L W+ LD + + Q A G + Sbjct: 333 ETGYLNFRMRALVVSFFTHNLWQPWQKATVILSQYFLDFEPGIHFPQIQMQA--GETGIN 390 Query: 405 YFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND------LSLNYPL 458 R++NPT G DP+G FI+ W+PEL + T ++H P L +YP Sbjct: 391 MLRMYNPTKNGIAHDPEGIFIKKWVPELAELDTAFVHEPSKMTPMEQQMANFILGKDYPK 450 Query: 459 PIVDHKKACHH 469 PIV+ ++ H Sbjct: 451 PIVNLQETRKH 461 >gi|119468403|ref|ZP_01611494.1| putative deoxyribodipyrimidine photolyase [Alteromonadales bacterium TW-7] gi|119447911|gb|EAW29176.1| putative deoxyribodipyrimidine photolyase [Alteromonadales bacterium TW-7] Length = 509 Score = 107 bits (268), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 113/477 (23%), Positives = 216/477 (45%), Gaps = 50/477 (10%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 +++VW + DLR++D++ L +A ++ + ++ P + R F+Y S++ + Sbjct: 5 INIVWFKRDLRLSDHQPLKSAF-DTGLPTLLIYNFEPLLLEDAHYNERHWRFVYQSIVDL 63 Query: 69 QKSLSQ-KGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEV-RRDKLLEKR 126 L++ V+ +++ N ++ L+ Q ++ +F +++ +N RD ++ Sbjct: 64 NSQLARFNAKVYTFNE--NMQTLLQKLNG---QFEISYIFSHQEIGLNNTFERDLAIKAW 118 Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 H I ++ +S P G+++ ++K + L + ++ V +++L Sbjct: 119 CHHNHI--NWQES---PTGAVIRGKKNRDNWNERWQKTMQAPLAIPNWKN--VNSVKLKN 171 Query: 187 PVTPSNIPRFF---DYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGT- 242 P +P + D FQ P+ +A +++ F ++ Y + P++ T Sbjct: 172 YKNPE-LPETYTQDDDNFQQGGPL------HAREVMQSFFTQRGKGYQKGISSPSLSRTH 224 Query: 243 -SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSW---LNELIWR-EFYRHLMAF 297 S+LSPYL+ G +S RQ + + +D W L + R ++ H M Sbjct: 225 CSRLSPYLAWGNISLRQVY----QTAIDAYHSNHPDKKGWKRPLAAFVSRLHWHCHFMQK 280 Query: 298 YPSVCMG--KPFIPWTEKIEWNKDSHL---LQAWKQGYTGFPIIDAAMRQLNTIGWMHNR 352 + S C K P + D H+ ++ W QG TG PIIDA MR L G+++ R Sbjct: 281 FESECTMEFKALNPGYHSFPYRTDKHVKHDIERWAQGQTGVPIIDACMRCLKATGYINFR 340 Query: 353 LRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAAS-TGNDSVPYFRIFNP 411 +R + SF+ L + W+ + LD + + Q AS TG +++ R +NP Sbjct: 341 MRAMLVSFVTHHLNISWQQASFPLANYFLDFEPGIHYPQIQMQASVTGINTI---RHYNP 397 Query: 412 TIQGKRFDPQGTFIRHWLPELNNVPTQYIHAP------HSWLDKNDLSLNYPLPIVD 462 Q + DP G FI+ W PEL +P +Y+H P + + L +YP P++D Sbjct: 398 IKQSEDQDPTGAFIKKWCPELEKLPIEYLHEPWEQTPMEALFNDFKLGEDYPEPMLD 454 >gi|148976255|ref|ZP_01812979.1| deoxyribodipyrimidine photolyase, putative [Vibrionales bacterium SWAT-3] gi|145964349|gb|EDK29604.1| deoxyribodipyrimidine photolyase, putative [Vibrionales bacterium SWAT-3] Length = 497 Score = 107 bits (268), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 115/449 (25%), Positives = 194/449 (43%), Gaps = 38/449 (8%) Query: 8 SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67 ++++VWL+ DLR+TD+ L A + I ++I P S R F++ SL Sbjct: 3 TINVVWLKRDLRLTDHAPLQHAL-SDQYPTILLYIFEPMLLNNAHYSERHWRFVWQSLQC 61 Query: 68 VQKSLSQKGIVFQYHQCSNFDDS-IEWLDSYCLQQRVTKLFYNRQYEIN-EVRRDKLLEK 125 + +SL G HQ S S ++ ++ + + LF +++ +N RD+ L Sbjct: 62 MNQSLKAYG-----HQVSILHGSAVDCFEAIQSRYHIKNLFSHQEIGLNCTFERDRELST 116 Query: 126 RL-QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQN--LVQADLRSLPVPAI 182 +H + + F ++ GS + K + +A I+ L +L + Sbjct: 117 WFTEHNIPWQEFAQGAVVR-GS--KDRVGWDKHWNSVMRAPIEESLFTAESLHTLDPEEL 173 Query: 183 RLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAI--Q 240 L + + + ++ + G A L F + Y P Sbjct: 174 ELAMEPPQAWLTK--------VNGIQTGGSALAWATLHDFFDRRGRDYYRSISSPEASRH 225 Query: 241 GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPS 300 ++LSPYL+ G +S R+ + L + + A S + L W + H M + S Sbjct: 226 ACTRLSPYLAWGNISLREVYQHLLGHWQVAGFRRSLIALS--SRLHW---HCHFMQKFES 280 Query: 301 VC------MGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLR 354 C + + +K E KD LQAWK G TG P++DA MR L+ G+++ R+R Sbjct: 281 ECAMEYRCINHAYEALLQK-ETVKDPTHLQAWKIGMTGVPLVDACMRCLHHTGYINFRMR 339 Query: 355 MITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQ 414 + SFL + +DWR G + LD + + +Q A G + RI+NPT Q Sbjct: 340 SMLVSFLTHHMNMDWRDGVTHLAQMFLDFEPGIHYPQFQMQA--GVTGINTIRIYNPTKQ 397 Query: 415 GKRFDPQGTFIRHWLPELNNVPTQYIHAP 443 + D G FIR W+PEL+++PT + P Sbjct: 398 AQEHDSDGDFIRKWVPELSDIPTPLLFEP 426 >gi|302422386|ref|XP_003009023.1| cryptochrome DASH [Verticillium albo-atrum VaMs.102] gi|261352169|gb|EEY14597.1| cryptochrome DASH [Verticillium albo-atrum VaMs.102] Length = 703 Score = 107 bits (268), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 83/290 (28%), Positives = 130/290 (44%), Gaps = 28/290 (9%) Query: 160 PFRKALIQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHIL 219 PF + ++A L PV + P PSN +P + GE +AL + Sbjct: 226 PFEMPVTYEELEAALLK-PVEDVLDDAPEYPSNATSV--HPLKG-------GELDALQRV 275 Query: 220 RKFCKE-KVYYYVEQRD-IPAIQGTSQLSPYLSIGVLSPRQCWNRL----------KEEF 267 K + Y R+ + + +++LS YL++G L+ RQ + +E Sbjct: 276 NHLIKSCSMSNYKNTRNGLLGVDFSTKLSGYLALGCLTARQVHEEMVKYEDGQGPQYKEI 335 Query: 268 VDLLIKPKSGAFSWLNELIWREFYRHLM-AFYPSVCMGKPFIPWTEKIEWNKD-----SH 321 G + EL+WR++ R F + + F + +W + Sbjct: 336 DGFGNGENEGTKAVRFELLWRDYMRLCTRKFGHRLFRAEGFRDDRKPTQWKTAKQPEIAE 395 Query: 322 LLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLL 381 +L+ + G TG IDA+ R+L G+ NR R ASFL K L +DWR G E++ L+ Sbjct: 396 ILKRFLAGTTGMGFIDASQRELLHTGYTSNRARQNVASFLAKHLGIDWRYGAEWYECMLI 455 Query: 382 DGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPE 431 D D++SN WQ+ A GND RIFNP Q +D QG +++ W+PE Sbjct: 456 DYDVSSNWSNWQYVAGVGNDPRGEARIFNPVKQAFDYDKQGEYVKAWVPE 505 >gi|225076344|ref|ZP_03719543.1| hypothetical protein NEIFLAOT_01388 [Neisseria flavescens NRL30031/H210] gi|224952329|gb|EEG33538.1| hypothetical protein NEIFLAOT_01388 [Neisseria flavescens NRL30031/H210] Length = 428 Score = 107 bits (268), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 116/451 (25%), Positives = 191/451 (42%), Gaps = 51/451 (11%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 LVW R +LR+ DN AL AA S + V+++ Q ++RQS F Y + ++ Sbjct: 24 LVWFRRNLRLHDNAALNAAV-ASGLPIACVWVS---QRPSENHNSRQSLFHYQAAQELHT 79 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130 L+ I + ++ +D + + +T + Y E+R+D L Sbjct: 80 RLAAHHIPL--YVVASDEDLLPLAAALNAHTVIT----DEAYTEAEIRQDNHLWHNFDRA 133 Query: 131 VIC-KSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189 I + +D +L +++ Y + +++A +Q +P T Sbjct: 134 GITLQHANDRGILAKSPLMDANGLPYTDFAAYKQAWLQAYSGQRPSETELPV------QT 187 Query: 190 PSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYL 249 N+P F + + GE AL F + V+Y + Q PA + TS L+ YL Sbjct: 188 GQNVPLFPAHTGAVLPAYQQGGETAALTQWHAFKQNLVHYPITQ-TFPARKNTSLLNAYL 246 Query: 250 SIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIP 309 S G +SPR L E + + F WL +LI+R+ Y + +A++ + P Sbjct: 247 SAGCISPR----LLAAEGL------ANRHFEWLEKLIFRD-YCYQLAYHRRLPETTDAAP 295 Query: 310 WTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDW 369 E W+ G TG PIIDA++R L G +H L+ + A + L D Sbjct: 296 VREY------------WRHGQTGVPIIDASIRGLEATGHLHPILQQLCAHYFCHALNFDP 343 Query: 370 RIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWL 429 G + S D A N W +AA +V Y + + DP G++IR ++ Sbjct: 344 NQGIAWTASVQTGTDPALNQANWHFAAQ-DTATVRYAH------RSHQIDPDGSYIRSYV 396 Query: 430 PELNNVPTQYIHAPHSWLDKNDLSLN-YPLP 459 PEL ++P+ IH P W +D+ + YP P Sbjct: 397 PELAHLPSTLIHTP--WAAADDIDTHGYPFP 425 >gi|261047494|gb|ACX54506.1| cryptochrome 1 [Capsella bursa-pastoris] Length = 162 Score = 107 bits (268), Expect = 4e-21, Method: Compositional matrix adjust. Identities = 63/168 (37%), Positives = 95/168 (56%), Gaps = 11/168 (6%) Query: 261 NRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDS 320 N EE V+L +K + RE+ R++ +P +P + + W D Sbjct: 6 NEAGEESVNLFLK----------SIGLREYSRYISFNHP-YSHERPLLGHLKFFPWAVDE 54 Query: 321 HLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQL 380 + +AW+QG TG+P++DA MR+L GW+H+R+R++ +SF VK L + WR G +YF L Sbjct: 55 NYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFVKVLQLPWRWGMKYFWDTL 114 Query: 381 LDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHW 428 LD DL S+ GWQ+ T DS + RI NP +G +FDP G ++R W Sbjct: 115 LDADLESDALGWQYITGTLPDSREFDRIDNPQFEGYKFDPNGEYVRRW 162 >gi|116256289|gb|ABJ90474.1| cryptochrome 1 [Equus caballus] Length = 378 Score = 107 bits (267), Expect = 4e-21, Method: Compositional matrix adjust. Identities = 78/230 (33%), Positives = 107/230 (46%), Gaps = 16/230 (6%) Query: 207 MFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS------QLSPYLSIGVLSPRQCW 260 ++P GE AL L + + K + V + P + S LSPYL G LS R + Sbjct: 156 VWPGGETEALTRLERHLERKAW--VANFERPRMNANSLLASPAGLSPYLRFGCLSCRLFY 213 Query: 261 NRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSV--CMGKPFIPWTEKIEWNK 318 RL + + + K S S +L+WREF+ P G P +I W+K Sbjct: 214 FRLTDLYRKV-KKNSSPPLSLYGQLLWREFFYTAATNNPRFDKMEGNPI---CVQIPWDK 269 Query: 319 DSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFM 377 + L W +G TGFP IDA M QL GW+H+ R A FL + DL + W G + F Sbjct: 270 NPEALAKWAEGRTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWISWEEGMKVFE 329 Query: 378 SQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRH 427 LLD D + N G W W S + +F + P G+R DP G +IR Sbjct: 330 ELLLDADWSINAGSWMW-LSCSSFFQQFFHCYCPVGFGRRTDPNGDYIRR 378 >gi|322709598|gb|EFZ01174.1| Putative cryptochrome DASH [Metarhizium anisopliae ARSEF 23] Length = 695 Score = 107 bits (267), Expect = 5e-21, Method: Compositional matrix adjust. Identities = 80/258 (31%), Positives = 115/258 (44%), Gaps = 30/258 (11%) Query: 208 FPIGEQNALHILRKFCKEKVY--YYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLK- 264 F GE + LR K Y + + + + +LS YLS+G L+ RQ L Sbjct: 263 FTGGETSGWARLRHLGKSSAMTSYKDTRNGLVGVDYSLKLSGYLSLGCLTARQIHEELLK 322 Query: 265 -EEFVDLLIKPKSGAFSWLN--------ELIWREFYR-----------HLMAFYPSVCMG 304 E+ D K G N EL+WR++ R L F Sbjct: 323 LEDGTDEQYKDAVGYGEGENDGTKGIRFELLWRDYMRLCTAKFGRKLFRLSGFRQDSSYD 382 Query: 305 KPFIPWTEKI---EWNKD----SHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMIT 357 K + E+ E D S +L+ ++ G TG +IDA+ R+L G+ NR R Sbjct: 383 KKWKTADEEKAGPEQEPDPAQISKILERFQNGTTGMGLIDASQRELFHTGYTSNRARQNA 442 Query: 358 ASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKR 417 ASF K L +DWR G E++ L+D D++SN WQ+ A GND R FNP Q Sbjct: 443 ASFFSKHLEIDWRYGAEWYEMMLVDYDVSSNWANWQYVAGIGNDPRGDARTFNPVKQAFD 502 Query: 418 FDPQGTFIRHWLPELNNV 435 +D +G ++R W+PEL + Sbjct: 503 YDKEGIYVRMWVPELQGL 520 >gi|71009567|ref|XP_758291.1| hypothetical protein UM02144.1 [Ustilago maydis 521] gi|46098033|gb|EAK83266.1| hypothetical protein UM02144.1 [Ustilago maydis 521] Length = 684 Score = 107 bits (267), Expect = 5e-21, Method: Compositional matrix adjust. Identities = 90/295 (30%), Positives = 130/295 (44%), Gaps = 45/295 (15%) Query: 211 GEQNALHILRKFCKEKVYY--YVEQRDIPAIQG----TSQLSPYLSIGVLSPRQCWNRLK 264 GE AL L CK+ Y + + + P T+ LSPYL G LS R+ W + Sbjct: 270 GEPIALEKLANICKDAKYVATFAKPKTSPGQSAEDPSTTLLSPYLKFGCLSVRKLWWDAE 329 Query: 265 EEFVDLLIKPKSGAFSWLN-ELIWREFYRHLMAFYP-----------SVCMGKPFIPWTE 312 E K+G LN +L++R+ Y A Y VC ++ W Sbjct: 330 EAKNRYKGGSKTGPPENLNGQLLFRDMY--ACAEYAIGDAFGRVRGNEVCR---YMDWYL 384 Query: 313 KIEWNKDSHL--------------LQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITA 358 ++++ + L A+K G TGFP IDA MRQL GWMH+ R A Sbjct: 385 PTHYDENGEVVLPRPAGDAVSEARLSAYKLGQTGFPWIDALMRQLRLEGWMHHLGRHSVA 444 Query: 359 SFLVKDLL-VDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKR 417 +FL + + W G E F L+D D SN G W W + + YFR++ + Sbjct: 445 AFLTRGQCWISWERGAEIFDEYLIDWDPCSNPGNWMWLSCSAF-FTQYFRLYGLATFPAK 503 Query: 418 FDPQGTFIRHWLPELNNVPTQYIH----APHSWLDKND--LSLNYPLPIVDHKKA 466 +D G +R + PEL P +YI+ AP K + +YPLP++D K+A Sbjct: 504 YDKTGALVRKYCPELAKFPDKYIYEPFNAPKEVQQKAGCIIGKDYPLPMLDEKEA 558 Score = 37.0 bits (84), Expect = 7.5, Method: Compositional matrix adjust. Identities = 43/178 (24%), Positives = 72/178 (40%), Gaps = 11/178 (6%) Query: 7 MSVH---LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYA 63 MS H L W R DLR+ D+ AL AA A + V+ P +H + + F+ Sbjct: 1 MSKHVRVLYWFRTDLRLHDSPALQAALDLKPAALFPVWCWDPNYVYKHRVGVNRFRFLLE 60 Query: 64 SLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKL- 122 S++ + K+++ Q + E L + +T L + + RRD+L Sbjct: 61 SMIALSKNITSTQSNSQLLVVRG--EPTELLPELWKRWSITHLVFEKDPSAYGRRRDQLI 118 Query: 123 LEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVP 180 LE + V + L P ++N K + +Q +V AD+ +P P Sbjct: 119 LEAAEKSNVKVVAVQGHHLYDPEQVVNKN----KGKPTMSMSTLQKIV-ADMGDVPKP 171 >gi|329133696|gb|AEB78729.1| DNA photolyase [Acinetobacter sp. Ver7] Length = 62 Score = 107 bits (266), Expect = 6e-21, Method: Compositional matrix adjust. Identities = 46/62 (74%), Positives = 54/62 (87%) Query: 350 HNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIF 409 HNR+RMI A FL K+LL+DWR GE++FM L+DGDLA+NNGGWQW ASTG D+VPYFRIF Sbjct: 1 HNRVRMIVAIFLSKNLLIDWRKGEQWFMQHLIDGDLAANNGGWQWCASTGTDAVPYFRIF 60 Query: 410 NP 411 NP Sbjct: 61 NP 62 >gi|241759630|ref|ZP_04757731.1| deoxyribodopyrimidine photolyase [Neisseria flavescens SK114] gi|241320002|gb|EER56383.1| deoxyribodopyrimidine photolyase [Neisseria flavescens SK114] Length = 411 Score = 107 bits (266), Expect = 6e-21, Method: Compositional matrix adjust. Identities = 116/451 (25%), Positives = 192/451 (42%), Gaps = 51/451 (11%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 LVW R +LR+ DN AL AA S + V+++ Q + RQS F Y + ++ Sbjct: 7 LVWFRRNLRLHDNAALNAAV-ASGLPIACVWVS---QRPSENHNPRQSLFHYQAAQELHT 62 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130 L+ I + ++ +D + ++ +T + Y E+R+D L Sbjct: 63 RLATHHIPL--YVVASDEDLLPLAAAFNAHTVIT----DEAYTEAEIRQDNHLWHNFDRA 116 Query: 131 VIC-KSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189 I + +D +L +++ Y + +++A +Q +P T Sbjct: 117 GITLQHANDRGILAKFPLMDANGLPYTDFAAYKQAWLQAYSGQRPSETELPV------QT 170 Query: 190 PSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYL 249 N+P F + + GE AL F + V+Y + Q + PA + TS L+ YL Sbjct: 171 RQNVPLFPAHTGAVLPAYQQGGETAALTQWHAFKQNLVHYPITQ-NFPARKNTSLLNAYL 229 Query: 250 SIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIP 309 S G +SPR L E + + F WL++LI+R+ Y + +A++ + P Sbjct: 230 SAGCISPR----LLAAEGL------ANRHFEWLDKLIFRD-YCYQLAYHRRLPETTDAAP 278 Query: 310 WTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDW 369 E W+ G TG PIIDA++R L G +H L+ + A + L D Sbjct: 279 VREY------------WRLGQTGVPIIDASIRGLEATGHLHPVLQQLCAHYFCHALNFDP 326 Query: 370 RIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWL 429 G + S D A N W AA +V Y + + DP G++IR ++ Sbjct: 327 NQGIAWAASVQTGTDPALNQANWHLAAQ-DTATVRYAH------RSHQIDPDGSYIRSYV 379 Query: 430 PELNNVPTQYIHAPHSWLDKNDLSLN-YPLP 459 PEL ++P+ IH P W +D+ + YP P Sbjct: 380 PELAHLPSTLIHTP--WAAADDIDTHGYPFP 408 >gi|86134108|ref|ZP_01052690.1| DNA photolyase/cryptochrome, animal cryptochrome and (6-4) photolyase subfamily [Polaribacter sp. MED152] gi|85820971|gb|EAQ42118.1| DNA photolyase/cryptochrome, animal cryptochrome and (6-4) photolyase subfamily [Polaribacter sp. MED152] Length = 496 Score = 107 bits (266), Expect = 6e-21, Method: Compositional matrix adjust. Identities = 83/270 (30%), Positives = 132/270 (48%), Gaps = 22/270 (8%) Query: 222 FCKEKVYYYVEQRDIPAI--QGTSQLSPYLSIGVLSPRQCWNR---LKEEFVDLLIKPKS 276 F +E+ Y+ PA+ + S+LSPY++ G LS RQ + + LK + K + Sbjct: 210 FFEERYKNYMNHISKPALSRKSCSRLSPYIAWGNLSIRQVYQKAIMLKND----ENKRQL 265 Query: 277 GAFSWLNELIWREFYRHLMAFYPSVCMGKPFI-PWTEKIEWNKDSHLLQAWKQGYTGFPI 335 GAF ++ L W+ + + F M + I K++ N + +AW++G TGFPI Sbjct: 266 GAF--VSRLRWQAHF--IQKFEMEHTMEEASINKGYHKLKKNISTKYQKAWREGKTGFPI 321 Query: 336 IDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWA 395 IDA+MR L+ G+++ R+R + ASF L W+ + LD + + Q Sbjct: 322 IDASMRCLSETGYLNFRMRSMLASFFTHILWQPWQDSSHHLSQLFLDFEPGIHFP--QLN 379 Query: 396 ASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPH--SWLDKN--- 450 +G + R++NP D FI+ W+PEL N+PT +IH P+ + LD+ Sbjct: 380 MQSGETGINEIRVYNPIKNSLEHDEDANFIKEWVPELANLPTAFIHQPYLMTPLDEQFNN 439 Query: 451 -DLSLNYPLPIVDHKKACHHTLNQYYAAKK 479 L ++YP PIVD K A + KK Sbjct: 440 FKLGVDYPKPIVDFKSARKRATQTLWDMKK 469 >gi|254480682|ref|ZP_05093929.1| FAD binding domain of DNA photolyase protein [marine gamma proteobacterium HTCC2148] gi|214039265|gb|EEB79925.1| FAD binding domain of DNA photolyase protein [marine gamma proteobacterium HTCC2148] Length = 495 Score = 106 bits (264), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 121/474 (25%), Positives = 199/474 (41%), Gaps = 46/474 (9%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 MSV +VWL+ DLR+ D++ L A +S V + P S R F+ SL Sbjct: 1 MSVSVVWLKRDLRLNDHQPLLRAL-SSGLPVFIFYCFEPMLLNDPRYSERHWRFVSQSLQ 59 Query: 67 QVQKSLSQ---KGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEV-RRDKL 122 + + L Q + +VFQ D++ + ++ ++ + + ++ RD+ Sbjct: 60 DMNRQLRQNRFRVLVFQ-------SDALPLFKLIHAESPISAVYSHEETGVDSTFGRDRS 112 Query: 123 LEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAI 182 + L + I + + G + ++ K V + + P A Sbjct: 113 IASWLNNEGIAWHESPTNGVQRGRTDRKGWN--RRWSEVMKMPQDQPVWDAVCAPPPLAG 170 Query: 183 RLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIP--AIQ 240 G + P + P Q + GE A +L F E+ +Y P + Sbjct: 171 GALGEALLRSPPEQWLRPVQDLQQG---GETAATQVLDSFLTERGAHYERHISKPDKSQL 227 Query: 241 GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWR-EFYRHLMAFYP 299 S+LSP+L+ G +S RQ L+ +P +G +N R ++ H + + Sbjct: 228 HCSRLSPHLAWGNISIRQVSQALEAR------RPYAGWERSMNAFESRLHWHCHFIQKFE 281 Query: 300 SVCMGKPFIPWTE------KIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRL 353 C + W + +E + D AW++G TG+P+IDAAMR L G+++ R Sbjct: 282 MECS----MEWRDLNRGYLDVERSYDPAAQLAWREGRTGYPLIDAAMRCLQATGYVNFRC 337 Query: 354 RMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAAS-TGNDSVPYFRIFNPT 412 R + SF L W + S LD + + Q A TG ++V RI+NP Sbjct: 338 RAMLVSFFCHLLWQPWHDAAVHLASLFLDFEPGIHYPQLQMQAGVTGINTV---RIYNPI 394 Query: 413 IQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSW----LDKNDLSLNYPLPIVD 462 Q DP+G FIR W+PEL +P IH P W +++ LS +YP PI+D Sbjct: 395 KQAIDHDPKGHFIRQWVPELRTMPEHLIHQP--WNANPMERMLLSCDYPEPIID 446 >gi|307105812|gb|EFN54060.1| hypothetical protein CHLNCDRAFT_136148 [Chlorella variabilis] Length = 661 Score = 105 bits (263), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 80/271 (29%), Positives = 118/271 (43%), Gaps = 58/271 (21%) Query: 212 EQNALHILRKFCKEK-VYYYVEQRDIP-AIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVD 269 E++ H +R +E + Y E R P + +++LS +LS+G LSPR E Sbjct: 322 EESDGHSVRSVDQEAPIATYRETRMQPFGVDSSAKLSAFLSLGCLSPRT----AHAEVAR 377 Query: 270 LLI---------------------------------------KPKSG-AFSWL-NELIWR 288 L + +P++G + WL L R Sbjct: 378 LAVLEQQQQQQQRRRRGQASSGDAAATAAVAAAAGEAAAAWREPQAGDTWRWLLMHLAIR 437 Query: 289 EFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGW 348 +F+ A + P +EW +D L + W QG TG P +DA MR+L G+ Sbjct: 438 DFFV-FTAVKEGDALEAPGGIRGRAVEWRRDDELFRRWAQGQTGLPFVDACMRELGATGF 496 Query: 349 MHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRI 408 M NR R +L +DWR+G YF S L D + A N G W + A TG+D P R Sbjct: 497 MSNRGRQ-------NELCLDWRLGLRYFESCLADHEWALNAGNWAYCAGTGSD--PRDRR 547 Query: 409 FNPTIQGKRFDPQGTFIRHWLPELNNV-PTQ 438 F QG+R+DP+ I+ W+P+L + P Q Sbjct: 548 FKTVSQGERYDPEARLIQAWVPQLAALRPAQ 578 >gi|224004440|ref|XP_002295871.1| predicted protein [Thalassiosira pseudonana CCMP1335] gi|209585903|gb|ACI64588.1| predicted protein [Thalassiosira pseudonana CCMP1335] Length = 571 Score = 105 bits (263), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 72/219 (32%), Positives = 106/219 (48%), Gaps = 24/219 (10%) Query: 233 QRDIPAIQGT--SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKS-GAFSWL-NELIWR 288 +R++ + G+ S+LS L++G LSPRQ + +K E L S +W+ N L R Sbjct: 317 ERNLCDVSGSHSSKLSVPLALGTLSPRQIYRYVKSEQEQLGNTTTSPDGIAWIINHLEIR 376 Query: 289 EFYRHLMAFYPSVCMGKPFI------PWTEK----IEW---NKDSHLLQAWKQGYTGFPI 335 +++ + S GK P K EW + W G T P+ Sbjct: 377 DYF-----LFESFLNGKAAYNLQGRRPTAHKPNVQREWLSLHDGQDAFTRWTSGKTNLPL 431 Query: 336 IDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWA 395 +DA M +L G++ NR+R S L KDL +DWR+G E+F L D D+A+N G WQ+ Sbjct: 432 VDAGMNELIATGYISNRIRQNIVSVLTKDLTIDWRLGAEWFQLALEDHDVAANYGNWQYF 491 Query: 396 ASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNN 434 A G D P R F Q R+D +G F+R W+ L + Sbjct: 492 AGVGGD--PKNRHFRTVSQAWRYDARGVFVRKWIDRLKD 528 >gi|31321921|gb|AAM50087.1| cryptochrome 4 [Gallus gallus] Length = 140 Score = 105 bits (263), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 55/129 (42%), Positives = 73/129 (56%), Gaps = 2/129 (1%) Query: 316 WNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK-DLLVDWRIGEE 374 W +D+ L WK TGFP IDA M QL GW+H+ R A FL + DL + W G + Sbjct: 2 WYEDAERLHKWKTAQTGFPWIDAIMTQLRQEGWIHHLARHAAACFLTRGDLWISWEEGMK 61 Query: 375 YFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNN 434 F LLD D + N G W W +++ Y RIF P G+R DP+G +IR +LP L N Sbjct: 62 VFEELLLDADYSINAGNWMWLSASAFFH-HYTRIFCPVRFGRRTDPEGQYIRKYLPILKN 120 Query: 435 VPTQYIHAP 443 P++YI+ P Sbjct: 121 FPSKYIYEP 129 >gi|260220872|emb|CBA28873.1| hypothetical protein Csp_A09310 [Curvibacter putative symbiont of Hydra magnipapillata] Length = 468 Score = 105 bits (263), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 108/449 (24%), Positives = 186/449 (41%), Gaps = 39/449 (8%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFI----ATPEQWRQHGISARQSHFIYASLL 66 + W R+D+R+ DN A AC + F A W G+S + + A++ Sbjct: 24 IYWFRSDMRLQDNPAWTRACAMGRPVLAVTFAPVLSAREAAWGIPGLSPSRKAWWAATVQ 83 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLF---YNRQYEINEVRRDKLL 123 ++++ L G+ + + + + ++ V + Y R +++ +R ++ Sbjct: 84 ELRRELDALGVSLLVLRGGSMEALVRLFEASGAVALVCEEIAAPYERA-QLSSLRASGIV 142 Query: 124 EKRLQHRVICKSFDD--SVLLPPGSILNHALQMYKVYTPFRKALIQ--NLVQADLRSLPV 179 + + K+ D SV PG ++ + PFR L N+ DL V Sbjct: 143 VHSVWQGTLFKAEDLPFSVTDLPGVFTRFRNEVERAKVPFRTPLPAPVNVTGYDLACDAV 202 Query: 180 PAIRLTGPVTPSNIPRFFDYPFQA----------------IDPMFPIGEQNALHILRKFC 223 V + +F P A +D + ++ Sbjct: 203 SFAEDF--VDGAAAGKFVADPRSAFQWRSGSSGANDEVLHLDEVLAGSGGGHAYLQHYLE 260 Query: 224 KEKVYYYVEQRD-IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWL 282 +V Y R+ + + +S+ SP+L++G +S + LK + G++ Sbjct: 261 SGRVAQYKATRNGLTGMAYSSKWSPWLALGAVSAPELMAALKAH--EREHGTTDGSYWLW 318 Query: 283 NELIWREFYRHLMAFYPSVCM---GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAA 339 EL+WR+++R L Y + G +E++ ++ S L W QG TG ++DA Sbjct: 319 FELLWRDYFRWLHLQYGAGLYRPKGLLEAAKSERVPHHRRSFTL--WTQGRTGCDLVDAG 376 Query: 340 MRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTG 399 MR+L G++ NR+R + ASFL+ +L DWR G +F SQLLD D+ SN G W + A G Sbjct: 377 MRELACSGYLSNRMRQVVASFLIYELGCDWRAGAAWFESQLLDFDVYSNQGNWLYIAGLG 436 Query: 400 NDSVPYFRIFNPTIQGKRFDPQGTFIRHW 428 D R FN Q DP G + W Sbjct: 437 TDPRG-GRRFNVAKQTADHDPDGAYRALW 464 >gi|241701053|ref|XP_002411902.1| DNA photolyase, putative [Ixodes scapularis] gi|215504842|gb|EEC14336.1| DNA photolyase, putative [Ixodes scapularis] Length = 253 Score = 105 bits (262), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 77/231 (33%), Positives = 110/231 (47%), Gaps = 19/231 (8%) Query: 205 DPMFPIGEQNALHILRKFCKEKVYY--YVEQRDIPAIQGTSQ--LSPYLSIGVLSPRQCW 260 D ++P GE AL L + + K + + + P SQ LSPYL G LS R + Sbjct: 23 DAVWPGGETEALARLERHLERKAWVASFGSPKMTPKSLLASQTGLSPYLRFGCLSARLFY 82 Query: 261 NRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFI-----PWTEKIE 315 ++L + + IK + S +L+WREF FY + F P +I Sbjct: 83 HQLADLYRK--IKKSNPPLSLQGQLLWREF------FYCAATRNPNFDRMHNNPICVQIP 134 Query: 316 WNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK-DLLVDWRIGEE 374 W+ ++ L W G TG+P IDA MRQL GW+H+ R A FL + DL + W G + Sbjct: 135 WDVNAEALAKWANGQTGYPWIDAIMRQLREEGWIHHVARYAVACFLTRGDLWLSWEEGMK 194 Query: 375 YFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425 F LLD D + N G W W S + +F ++ P G++ DP G FI Sbjct: 195 VFDELLLDADWSVNAGSWMW-LSCSSFFQQFFHLYCPVRFGRKADPSGDFI 244 >gi|332211183|ref|XP_003254698.1| PREDICTED: LOW QUALITY PROTEIN: cryptochrome-2-like [Nomascus leucogenys] Length = 543 Score = 105 bits (261), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 81/243 (33%), Positives = 110/243 (45%), Gaps = 23/243 (9%) Query: 197 FDYPFQAIDP-MFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS------QLSPYL 249 +P + + P ++ GE AL L K + K + V + P + S LSPYL Sbjct: 240 LGFPTEGLGPAVWQGGETEALARLDKHLERKAW--VANYERPRMSANSLLASPTGLSPYL 297 Query: 250 SIGVLSPRQCWNRLKEEFVDLLIKPKSGA---FSWLNELIWREFYRHLMAFYPSV--CMG 304 G LS R + RL DL K K + S +L+WREF+ P G Sbjct: 298 RFGCLSCRLFYYRL----WDLYKKVKRNSTPPLSLFGQLLWREFFYTAATNNPRFDRMEG 353 Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK- 363 P +I W+++ L W +G TGFP IDA M QL GW+H+ R A FL + Sbjct: 354 NPIC---IQIPWDRNPEALAKWAEGKTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRG 410 Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423 DL V W G F LLD D + N G W W + + +F + P G+R DP G Sbjct: 411 DLWVSWESGVRVFDELLLDADFSVNAGSWMWLSCSAFFQQ-FFHCYCPVGFGRRTDPSGD 469 Query: 424 FIR 426 +IR Sbjct: 470 YIR 472 >gi|149198712|ref|ZP_01875755.1| Deoxyribodipyrimidine photolyase [Lentisphaera araneosa HTCC2155] gi|149138148|gb|EDM26558.1| Deoxyribodipyrimidine photolyase [Lentisphaera araneosa HTCC2155] Length = 481 Score = 105 bits (261), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 83/270 (30%), Positives = 128/270 (47%), Gaps = 25/270 (9%) Query: 211 GEQNALHILRKFCKE--KVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFV 268 GE A L F + K Y+ + + + +LSPYL+ G +S RQ + +KE Sbjct: 193 GEDTAHRYLTSFLADRGKDYHRFISKPSKSRKSCGRLSPYLAWGNISSRQVYQFIKE--- 249 Query: 269 DLLIKPKSGAFS-WLNELIWREFY---RHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQ 324 K A+S L + WR + + Y + + K + E + N ++ ++ Sbjct: 250 SPKYKDNKRAYSGLLTRIKWRSHFIQKFEVECSYEYLYLNKGY----ELLSLNFNAEHIR 305 Query: 325 AWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGD 384 AW++G TG+P++DA MR L+ GW++ R+R + SF L DWR G + LD + Sbjct: 306 AWEKGKTGYPLVDACMRCLHATGWINFRMRAMLTSFFCHHLAQDWRDGVYHLAKLFLDYE 365 Query: 385 LASNNGGWQW-AASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAP 443 + +Q A +TG ++V RI+NP Q DP G FIR W+PEL + IH P Sbjct: 366 PGIHFPQFQMQAGTTGINTV---RIYNPIKQSMDNDPHGEFIRQWVPELKELNNNEIHEP 422 Query: 444 -------HSWLDKNDLSLNYPLPIVDHKKA 466 +L L YP PI+D K+ Sbjct: 423 WKIELMEAKMKGYANLHL-YPDPIIDIKET 451 Score = 40.4 bits (93), Expect = 0.71, Method: Compositional matrix adjust. Identities = 22/66 (33%), Positives = 35/66 (53%), Gaps = 1/66 (1%) Query: 8 SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67 +++VWL+ DLR+ D+ L AA S + ++ P +S +FIY SLL+ Sbjct: 3 EINVVWLKRDLRLNDHACL-AAAEASKLPYLIIYCFEPRLINAPDVSENHLNFIYLSLLE 61 Query: 68 VQKSLS 73 +QK L Sbjct: 62 MQKKLE 67 >gi|311695859|gb|ADP98732.1| deoxyribodipyrimidine photo-lyase [marine bacterium HP15] Length = 538 Score = 105 bits (261), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 79/285 (27%), Positives = 129/285 (45%), Gaps = 21/285 (7%) Query: 211 GEQNALHILRKFCKEKVYYYVEQRDIP--AIQGTSQLSPYLSIGVLSPRQCWNRLKE--E 266 G +L F + Y P A++ S+LSP+++ G +S R+ + K Sbjct: 218 GSARGEKLLESFLDRRCVGYQYNISSPNTAVRACSRLSPHIAYGTVSLREIYQEAKATGN 277 Query: 267 FVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNK----DSHL 322 + L + K S+ + L W + + P + F ++E K DS Sbjct: 278 HRNTLPRKKKSLTSFRSRLHWHCHFIQKLEDEPEL----EFRAMHREMEALKTGPNDSER 333 Query: 323 LQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLD 382 LQ W++G TG+P++DA+MR L GW++ R+R + + L + WR + D Sbjct: 334 LQRWQEGQTGWPLVDASMRALAHSGWINFRMRAMLMAIASYQLWLHWRDPALHLARLFTD 393 Query: 383 GDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHA 442 + + Q +G + RI+NP +Q ++ DP+G FIR W+PEL VP++ IH Sbjct: 394 FEPGIHYS--QTQMQSGLTGINALRIYNPVLQSQKLDPEGEFIRRWIPELAGVPSEMIHT 451 Query: 443 PHSWL----DKNDLSLN-YPLPIVDHKKACHHTLNQYYAAKKQSL 482 P WL K N Y P+ DH++A +KQS+ Sbjct: 452 P--WLMTPAQKERYGGNTYIAPVCDHEQAARVARKAVGDFRKQSV 494 >gi|160335014|gb|ABX24915.1| cryptochrome 1 [Capsella bursa-pastoris] gi|160335192|gb|ABX25004.1| cryptochrome 1 [Capsella bursa-pastoris] Length = 161 Score = 105 bits (261), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 62/166 (37%), Positives = 94/166 (56%), Gaps = 11/166 (6%) Query: 261 NRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDS 320 N EE V+L +K + RE+ R++ +P +P + + W D Sbjct: 6 NEAGEESVNLFLK----------SIGLREYSRYISFNHP-YSHERPLLGHLKFFPWAVDE 54 Query: 321 HLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQL 380 + +AW+QG TG+P++DA MR+L GW+H+R+R++ +SF VK L + WR G +YF L Sbjct: 55 NYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFVKVLQLPWRWGMKYFWDTL 114 Query: 381 LDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIR 426 LD DL S+ GWQ+ T DS + RI NP +G +FDP G ++R Sbjct: 115 LDADLESDALGWQYITGTLPDSREFDRIDNPQFEGYKFDPNGEYVR 160 >gi|223997602|ref|XP_002288474.1| predicted protein [Thalassiosira pseudonana CCMP1335] gi|220975582|gb|EED93910.1| predicted protein [Thalassiosira pseudonana CCMP1335] Length = 408 Score = 105 bits (261), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 85/287 (29%), Positives = 127/287 (44%), Gaps = 24/287 (8%) Query: 211 GEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS--QLSPYLSIGVLSPRQ---CWNRLKE 265 GE A +L F + Y P TS +LSPYL+ G +S R R +E Sbjct: 111 GETKAFGMLHSFLTHRGANYSAGISSPNTSWTSCSRLSPYLTWGHISLRYVIVTTQRKQE 170 Query: 266 EFVDLLIKPKSGAFS---WLNELI-------WREFYRHLMAFYPSVCMGKPFIPWT--EK 313 E + + KS + WL L WR + + PS+ + + ++ + Sbjct: 171 ELREHRKRNKSRGEAPSLWLRSLASFQSRMHWRSHFIQKLESQPSLEVQDQCLAFSHLRR 230 Query: 314 IEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGE 373 + + ++W +G TG+P +DA MR L GW++ R R + SF +L +DW+ Sbjct: 231 QPGDFNESYYESWCEGKTGYPYVDACMRCLRHCGWINFRARAMLVSFATYNLWLDWKRIA 290 Query: 374 EYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELN 433 Y LD + + Q +G + R++N T QGK DP G FIR +PEL Sbjct: 291 SYLARLFLDYEPGIHYP--QLQMQSGVTGINAMRVYNVTKQGKDQDPNGVFIRKHVPELR 348 Query: 434 NVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQ 480 NVP +YIH P + YP PIVD K A ++ +KQ Sbjct: 349 NVPVEYIHEPFGM-----PCVYYPAPIVDEKAAAKAAKDKLSGVRKQ 390 >gi|91217399|ref|ZP_01254359.1| putative deoxyribodipyrimidine photolyase [Psychroflexus torquis ATCC 700755] gi|91184507|gb|EAS70890.1| putative deoxyribodipyrimidine photolyase [Psychroflexus torquis ATCC 700755] Length = 485 Score = 105 bits (261), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 121/493 (24%), Positives = 203/493 (41%), Gaps = 70/493 (14%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 V++VW + DLR+ D+ L+ A V+ ++I P + S R FI SL + Sbjct: 2 VNVVWFKRDLRLQDHAPLHLALQKKQP-VLLLYIFEPILLKDSHYSERHFRFIKESLRDI 60 Query: 69 QKSLSQKGIVFQYH-QCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEV--RRDKLLEK 125 QK L YH Q + + E + QQ K ++ Q ++ +RDK L+ Sbjct: 61 QKQLEA------YHTQVLIVEGNAEDVFKTIHQQLTIKSVFSHQETGLQITFKRDKNLKL 114 Query: 126 RLQHRVIC-KSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIR- 183 + I K F ++ ++ LQ K + L +N + DL + Sbjct: 115 LFKSLSIQWKEFVNNGVI-------RGLQNRKTWI----NLWENFMSQDLLYFSASLGQF 163 Query: 184 --------LTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRD 235 L G ++P ++ + FQ G AL L+ F +++ Y + Sbjct: 164 ENQNQIDSLKGQLSPVDLSTERNLNFQKG------GRPTALRYLKGFLQDRYPNYQKNIS 217 Query: 236 IP--AIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWR----- 288 P A + S+LSPY++ GVLS R+ E + K K + + L W+ Sbjct: 218 KPLLARKSCSRLSPYIAWGVLSMREVIQASIE--IQDKTKHKQALSQFQSRLRWQAHFIQ 275 Query: 289 ----EFYRHLMAFYPSV-CMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQL 343 E++ F + + KP+ + L +AWK+G TGFP++DA+M+ L Sbjct: 276 KFEMEYHAEFQNFNSAFNVLEKPY-----------NKALAEAWKKGETGFPLVDASMKCL 324 Query: 344 NTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSV 403 G+++ R+R + SF L W+ + S LD + + Q A G + Sbjct: 325 IQTGYLNFRMRALLVSFFTHLLWQTWQEASSHLASLFLDFEPGIHYPQLQMQA--GTTGI 382 Query: 404 PYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAP------HSWLDKNDLSLNYP 457 RI+NP + D G FI +LP L +P +++H P + +L +YP Sbjct: 383 HTLRIYNPVKNSYKHDLDGEFILTYLPSLKGIPLEFVHEPWKLTAMEQSMYNFELGKDYP 442 Query: 458 LPIVDHKKACHHT 470 PI++ H Sbjct: 443 RPIIEMATTRQHA 455 >gi|169617021|ref|XP_001801925.1| hypothetical protein SNOG_11687 [Phaeosphaeria nodorum SN15] gi|160703316|gb|EAT80731.2| hypothetical protein SNOG_11687 [Phaeosphaeria nodorum SN15] Length = 1229 Score = 105 bits (261), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 75/248 (30%), Positives = 113/248 (45%), Gaps = 35/248 (14%) Query: 240 QGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFY---RHLMA 296 Q T+ LSP+L G LS R+ + R+++ K S +L++R+ Y + + Sbjct: 841 QSTTLLSPHLHFGSLSVREFYWRVQDIVTSFKGKASQPPASLTGQLLFRDMYFGAQAALG 900 Query: 297 FYPSVCMGKP---FIPWTEKIEWNKDSHLL---------------QAWKQGYTGFPIIDA 338 + P FIPW + ++L+ Q WK G TGFP IDA Sbjct: 901 YSFGQTYNNPACRFIPWHLPSAIDPATNLITGKYLVDSALAESHFQRWKHGRTGFPWIDA 960 Query: 339 AMRQLNTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAAS 397 MRQL GW+H+ R A FL + +DW G E F L+D + A N G WQW + Sbjct: 961 LMRQLAREGWIHHLGRHAVACFLTRGGCYIDWERGAEVFEEFLIDHESACNIGNWQWLSC 1020 Query: 398 TGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYP 457 T +FR ++P ++D G F+R ++PEL + ++I+ P + Sbjct: 1021 TAF-FAQFFRCYSPVAFPAKWDKNGDFVRRYVPELAHFDKKFIYEP------------WK 1067 Query: 458 LPIVDHKK 465 PI D KK Sbjct: 1068 APIADQKK 1075 >gi|79313247|ref|NP_001030703.1| UVR3 (UV REPAIR DEFECTIVE 3); DNA (6-4) photolyase [Arabidopsis thaliana] gi|332642183|gb|AEE75704.1| (6-4)DNA photolyase [Arabidopsis thaliana] Length = 445 Score = 104 bits (260), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 117/441 (26%), Positives = 184/441 (41%), Gaps = 69/441 (15%) Query: 1 MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHF 60 + + S L+W R LR+ DN AL A S+ + VF+ P H+ Sbjct: 17 ITSMATGSGSLIWFRKGLRVHDNPALEYASKGSEF-MYPVFVIDP-------------HY 62 Query: 61 IYASLLQVQKSLSQKG---IVFQYHQCSNFDDSIEWLDSY--------------CLQQ-R 102 + + S+ G I F + D S++ L S CLQ+ + Sbjct: 63 MESDPSAFSPGSSRAGVNRIRFLLESLKDLDSSLKKLGSRLLVFKGEPGEVLVRCLQEWK 122 Query: 103 VTKLFYNRQYEIN---EVRRDKLLEKRLQHRVICKSFDDSVLLPPGSILN-HALQMYKVY 158 V +L + +Y+ + + K+ + V S L P I+ + + Y Sbjct: 123 VKRLCF--EYDTDPYYQALDVKVKDYASSTGVEVFSPVSHTLFNPAHIIEKNGGKPPLSY 180 Query: 159 TPFRKALIQ-NLVQADL--RSLPVPAIRLTGPVTPSNIPRFFDYPF----QAIDPMFPIG 211 F K + + +++L +P I G + S +P + + QA F G Sbjct: 181 QSFLKVAGEPSCAKSELVMSYSSLPPIGDIGNLGISEVPSLEELGYKDDEQADWTPFRGG 240 Query: 212 EQNALHILRKFCKEKVYY--YVEQRDIPAI---QGTSQLSPYLSIGVLSPRQCWNRLKEE 266 E AL L K +K + + + + P+ T+ +SPYL G LS R + L+ Sbjct: 241 ESEALKRLTKSISDKAWVANFEKPKGDPSAFLKPATTVMSPYLKFGCLSSRYFYQCLQNI 300 Query: 267 FVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPS--------VCMGKPFIPWTEKIEWNK 318 + D+ K S S L +L+WREF+ P+ +C ++I WN+ Sbjct: 301 YKDVK-KHTSPPVSLLGQLLWREFFYTTAFGTPNFDKMKGNRIC---------KQIPWNE 350 Query: 319 DSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFM 377 D +L AW+ G TG+P IDA M QL GWMH+ R A FL + DL + W G + F Sbjct: 351 DHAMLAAWRDGKTGYPWIDAIMVQLLKWGWMHHLARHCVACFLTRGDLFIHWEQGRDVFE 410 Query: 378 SQLLDGDLASNNGGWQWAAST 398 L+D D A NNG W W + + Sbjct: 411 RLLIDSDWAINNGNWMWLSCS 431 >gi|332141438|ref|YP_004427176.1| deoxyribodipyrimidine photolyase [Alteromonas macleodii str. 'Deep ecotype'] gi|327551460|gb|AEA98178.1| deoxyribodipyrimidine photolyase [Alteromonas macleodii str. 'Deep ecotype'] Length = 273 Score = 104 bits (260), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 76/225 (33%), Positives = 109/225 (48%), Gaps = 7/225 (3%) Query: 208 FPIGEQNALHILRKFC---KEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLK 264 F GE AL+ L + K Y + + + +++LS +L+ G LS R+ R Sbjct: 53 FIGGESAALNHLETYLFDWKAAATYKETRNTLDTWKDSTKLSAWLANGSLSAREV-IRQV 111 Query: 265 EEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQ 324 + F + K S + + EL+WREF+ L Y + I K D Sbjct: 112 QRFEQTIEKNDSTYWVYF-ELLWREFFHWLQCKYGAKWFRFSGIQ-GRKPTTCHDPETFS 169 Query: 325 AWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGD 384 W +G TG+ I+DA MRQL G+M NR R + AS V +L DWR G +F QL+D D Sbjct: 170 RWCKGETGYRIVDACMRQLAETGYMSNRGRQLVASCFVHELRQDWRYGAAWFEHQLIDYD 229 Query: 385 LASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWL 429 + SN G W + A G+D + R FN Q + +DP G F + WL Sbjct: 230 VGSNWGNWLYLAGVGSDPRGH-RQFNLQKQTEIYDPDGRFRKAWL 273 >gi|302745164|gb|ADL62685.1| cryptochrome 5 [Phreatichthys andruzzii] Length = 411 Score = 104 bits (260), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 110/419 (26%), Positives = 180/419 (42%), Gaps = 47/419 (11%) Query: 8 SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67 S+H W R LR+ DN AL AA + + +F+ P I + F+ +L Sbjct: 5 SIH--WFRKGLRLHDNPALLAALKDC-RHIYPLFLLDPWYPNNTHIGINRWRFLIEALKD 61 Query: 68 VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK-- 125 + SL K + + S E L + ++T+L + E RDK + K Sbjct: 62 LDSSL--KKLNSRLFVVSG--PPAEVLPKLFEKWKITRLTFEVDTEPYSQSRDKEVMKLA 117 Query: 126 ---------RLQHRV--ICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADL 174 ++ H + I + +++ PP + + + + +P K + + D+ Sbjct: 118 EENGVEVIPKISHTLYNIDRIIEENNGKPPMTYVRFLSVVNAIGSP--KKPVPAPTKEDM 175 Query: 175 RSLPVPAIRLTGPVTPSNIPRFFDYPF--QAIDP-MFPIGEQNALHILRKFCKEKVYY-- 229 + + P IP D ++ P +FP GEQ AL L + + + Sbjct: 176 KGVSTPFFE--DHEEEFRIPTLEDLGLDTSSLGPNLFPGGEQEALRRLDEHMERTTWVCK 233 Query: 230 YVEQRDIP--AIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIW 287 + + + P I T+ LSPY+ G LS R W RL + + + S +L+W Sbjct: 234 FEKPQTSPNSIIPSTTVLSPYIRFGCLSARTFWWRLADVYRGK--QHSEPPVSLHGQLLW 291 Query: 288 REFYRHLMAFYPSVCMGKPFIPWTE------KIEWNKDSHLLQAWKQGYTGFPIIDAAMR 341 REF FY + +G P E +++W+ + L AW++ TGFP IDA M Sbjct: 292 REF------FY-TTAVGIPNFNRMEGNRHCVQVDWDNNPEHLAAWREARTGFPFIDAIMT 344 Query: 342 QLNTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTG 399 QL GW+H+ R A FL + DL + W G++ F LLD D + N G WQW +++ Sbjct: 345 QLCQEGWIHHLARHAVACFLTRGDLWISWEEGQKVFEELLLDADWSLNAGNWQWLSASA 403 >gi|255533599|ref|YP_003093971.1| cryptochrome, DASH family [Pedobacter heparinus DSM 2366] gi|255346583|gb|ACU05909.1| cryptochrome, DASH family [Pedobacter heparinus DSM 2366] Length = 430 Score = 104 bits (259), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 105/415 (25%), Positives = 180/415 (43%), Gaps = 40/415 (9%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQS-----HFIYASL 65 LVW RNDLR+ DN+ L A SD+ ++ V+ P + ++ F+ S+ Sbjct: 7 LVWFRNDLRLHDNEMLVEAIAKSDS-ILPVYFFDPRYFENTRFGTAKTGIVRASFLLESI 65 Query: 66 LQVQKSLSQKG---IVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKL 122 L ++K+ + G ++ Q D +E D + +++++R+ E Sbjct: 66 LSLRKAFQRFGGDILLVQGKPEDMIRDLVEQFD-------IAEVYHHREVGPEETEISGH 118 Query: 123 LEKRL-QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPA 181 +E L ++ K F L + + V+ F+K ++ + P Sbjct: 119 VEDLLWTLKINLKHFIGHTLYNKEDLPFPIKDIPDVFAQFKKKTERDAIVKACFLTP-EH 177 Query: 182 IRLTGPVTPSNIPRFFDYPFQA-----IDPMFPIGEQNALHILRKFCKEKVYYYVEQ--R 234 I +P D F+ I+ GE + L L + + Y++Q + Sbjct: 178 IDFVENADWGQLPSLKDLGFETVAGAMIEKYATGGEDSGLQHLAQLLEAGADIYLKQNTK 237 Query: 235 DIPAIQG-TSQLSPYLSIGVLSPRQCWNRLKE-EFVDLLIKPKSGAFSWLNELIWREFYR 292 P G +S+LS +L+IG LSPR + ++KE E V L S F L+WR+++R Sbjct: 238 HTPEKPGFSSRLSAWLTIGCLSPRMVYWKVKEAEGVFGLNANFSQIFL---GLLWRDYFR 294 Query: 293 -----HLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIG 347 H +AF + K + E+++ L+ WK G T P++D M LN G Sbjct: 295 FMFKKHGIAFLQETDLEKDIMQAIERVD-----PALEKWKTGCTAHPVVDKYMYDLNATG 349 Query: 348 WMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDS 402 ++ + R++ A++LV L + W G YF +L+D ASN G W A G D+ Sbjct: 350 FIPHSGRLLVATYLVHVLKIHWTCGAAYFEEKLIDYAPASNWGNWASVAGIGKDA 404 >gi|225010805|ref|ZP_03701273.1| Deoxyribodipyrimidine photo-lyase [Flavobacteria bacterium MS024-3C] gi|225005013|gb|EEG42967.1| Deoxyribodipyrimidine photo-lyase [Flavobacteria bacterium MS024-3C] Length = 491 Score = 104 bits (259), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 80/291 (27%), Positives = 131/291 (45%), Gaps = 33/291 (11%) Query: 211 GEQNALHILRKFCKEKVYYYVE--QRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFV 268 G N L F +++ Y + + + + + ++SPYL+ G+LS +Q + Sbjct: 194 GSLNGWKYLHSFMTKRISGYQKYYSKPLESRLHSGRISPYLAWGMLSAKQVLQYVTRH-- 251 Query: 269 DLLIKPKSGAFSWLNELIWREFYRHLMAFYPSV----------CMGKPFIPWTEKIEWNK 318 + K S+L+ L W+ + PS+ + K IP Sbjct: 252 QKQVSNKRNINSFLSRLSWQAHFIQKFEMEPSIEFDAVNKGYAALNKTVIP--------- 302 Query: 319 DSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMS 378 +H L AW+QG TG P++DAAMR L G+++ RLR + ASF L W+ + Sbjct: 303 -AHQL-AWRQGQTGVPMVDAAMRCLVQTGFVNFRLRAMLASFFTHLLWQPWQDCSPHLAQ 360 Query: 379 QLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQ 438 LD + + Q A G + RI+NP G DP+G FI+ W+PEL +P Sbjct: 361 HFLDFEPGIHFPQLQMQA--GETGINTIRIYNPVKNGLDHDPKGIFIKKWVPELALIPEV 418 Query: 439 YIHAP------HSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQSLL 483 Y+H P + L +YP PI+D +K+ + +Q + +K +L+ Sbjct: 419 YVHEPWKMPPLEAAFLNFTLGNDYPAPIIDLEKSRKYAADQLWGLRKTNLV 469 >gi|229529536|ref|ZP_04418926.1| deoxyribodipyrimidine photolyase/cryptochrome family protein [Vibrio cholerae 12129(1)] gi|229333310|gb|EEN98796.1| deoxyribodipyrimidine photolyase/cryptochrome family protein [Vibrio cholerae 12129(1)] Length = 485 Score = 104 bits (259), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 116/466 (24%), Positives = 194/466 (41%), Gaps = 42/466 (9%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 ++LVWL+ DLR+TD+ L AA S + +++ P S R F++ SL + Sbjct: 4 INLVWLKRDLRLTDHAPLQAAL-TSGRPTLLLYLFEPMLLGDAHYSERHWRFVWQSLQAI 62 Query: 69 QKSLSQ-KGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127 + L+Q KG V + +W C + + Y EV ++ L Sbjct: 63 NRDLAQSKGEVLIV--------TSDW--QTCFARIAERYAIEAIYSHQEVGLACTFQRDL 112 Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQ------NLVQADLRSLPVPA 181 C+ D P + + Q K + + +++ +L +A+ L A Sbjct: 113 ALAQWCQQHDIVWHQLPYAAVIRGAQTRKNWDEHWQQVMRSPCCDPDLTRANWLKLDAAA 172 Query: 182 IRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAI-- 239 + L S+IP + M G A L F + Y P++ Sbjct: 173 LGLR-----SDIPATWQSKQAG---MQTGGSDMAWATLEDFFARRGREYYRSISSPSLAR 224 Query: 240 QGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFS----WLNELIWREFYRHLM 295 S++SPYL+ G +S R+ + L + + + A S W I + M Sbjct: 225 HACSRMSPYLAWGNISLREMYQTLLKHWSVAGFRRSLIALSSRLHWHCHFIQKFESECEM 284 Query: 296 AFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRM 355 F C+ + + ++ + + L AW+ G+TG P++DA MR L G+++ R+R Sbjct: 285 EFR---CVNRAYDSLLQQSS-DAPAAQLAAWQTGHTGIPLVDACMRCLIQTGYLNFRMRA 340 Query: 356 ITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQW-AASTGNDSVPYFRIFNPTIQ 414 + S L + VDWR G Y LD + + +Q A TG +++ RI+NPT Q Sbjct: 341 MLVSVLTHHMNVDWRAGVTYLAQLFLDFEPGIHYPQFQMQAGVTGTNTI---RIYNPTKQ 397 Query: 415 GKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPI 460 + D +G FI W+PEL VP + P WL + Y +P+ Sbjct: 398 AQEHDSEGQFIHKWVPELAQVPVPLLFEP--WLMTPLEAQMYQVPL 441 >gi|331006214|ref|ZP_08329536.1| Deoxyribodipyrimidine photolyase [gamma proteobacterium IMCC1989] gi|330419971|gb|EGG94315.1| Deoxyribodipyrimidine photolyase [gamma proteobacterium IMCC1989] Length = 477 Score = 103 bits (258), Expect = 5e-20, Method: Compositional matrix adjust. Identities = 118/460 (25%), Positives = 196/460 (42%), Gaps = 43/460 (9%) Query: 3 ATTAMSVHLVWLRNDLRITDNKALYAA--CHNSDAKVIAVFIATPEQWRQ-----HGISA 55 A T L+W +DLRI DN L+ A +N+ +++ ++ E + Q I+ Sbjct: 4 APTPEPTTLLWFTHDLRIHDNALLFYANKINNNKHRLLCLYCIDEEWFEQDRFGLQRIAT 63 Query: 56 RQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTK--LFYNRQYE 113 + +F+ SL + L G + + + + L Y + ++ + YN Q Sbjct: 64 HRWNFLVGSLHALNTELQALGQQLVIAKGNPTEIISDLLSRYSINTVISSNTVGYNEQAY 123 Query: 114 INEVRRDKLLEKRLQHRVICKSFDDSVL------LPPG-SILNHALQMYKVYTPFRKALI 166 E+ +Q F +S L LP S ++ K + + A+ Sbjct: 124 WQEISNKYPHLAFIQQETFTL-FAESQLPFLLNNLPDNFSKFRRLIESTKNHPHYLDAIK 182 Query: 167 QNLVQADLRSLPVPAIRL------TGPVTPS--NIPRFFDYPFQAIDPMFPIGEQNAL-H 217 +L+ + P I L + P T + N D F GE + + H Sbjct: 183 SSLIGQPTKLPPKLHITLQEEHQFSWPRTSTIPNGKNNHDINANKNSLGFYGGEASGISH 242 Query: 218 ILRKFCKEKVYYYVEQRDIPAI-----QGTSQLSPYLSIGVLSPR---QCWNRLKEEFVD 269 + + F +Y + R+ Q +S+ SP+L+ G LS R Q +R +EE Sbjct: 243 LKQYFSTNAPSHYKDTRNALGCEKEEWQLSSKFSPWLANGSLSARYIVQMLSRYEEE--- 299 Query: 270 LLIKPKSGAFSWLN-ELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQ 328 + + W+ EL+WRE+++ Y + I + + Q W Sbjct: 300 ---NGANDSTYWIMFELLWREYFQWYARKYGKKLFHRAGIQQRAPLA-SFYPQRFQQWCN 355 Query: 329 GYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASN 388 G T +P+++A M+QLN G++ NR R I AS L+ +L +DWR G YF QL+D D+A+N Sbjct: 356 GSTPWPLVNACMKQLNQTGFLSNRGRQIVASVLIHELGLDWRCGAAYFEQQLIDYDVAAN 415 Query: 389 NGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHW 428 G WQ+ A G D R FN Q + +DP T+I+ W Sbjct: 416 WGNWQYIAGVGADPRG-GRQFNIDKQQQLYDPDETYIKRW 454 >gi|156055622|ref|XP_001593735.1| hypothetical protein SS1G_05163 [Sclerotinia sclerotiorum 1980] gi|154702947|gb|EDO02686.1| hypothetical protein SS1G_05163 [Sclerotinia sclerotiorum 1980 UF-70] Length = 651 Score = 103 bits (258), Expect = 5e-20, Method: Compositional matrix adjust. Identities = 68/221 (30%), Positives = 108/221 (48%), Gaps = 28/221 (12%) Query: 242 TSQLSPYLSIGVLSPRQCWNRLK---------EEFVDLLI---KPKSGAFSWLNELIWRE 289 +++LS YL++G ++ RQ + + + DL G ++ EL+WR+ Sbjct: 301 STKLSAYLALGSITSRQIHASMSVFENGSTSDDRYKDLEGYGNGENEGTYAVRFELLWRD 360 Query: 290 FYRHLM-AFYPSV-------CMGKPFIPWTEKIEWNKDS-------HLLQAWKQGYTGFP 334 + R F P + G W+ +++ KD +++ + G TG Sbjct: 361 YMRLCTRKFGPQLFRLGGFKAEGNAHSKWS-RLDSPKDGFSKEQIQEIVERFLNGTTGMG 419 Query: 335 IIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQW 394 IDA+ R++ G+ NR R ASFL K L +DWRIG E++ L+D D++SN G WQ+ Sbjct: 420 FIDASQREIYHTGYTSNRARQNVASFLSKHLYIDWRIGAEWYECMLVDYDVSSNWGNWQY 479 Query: 395 AASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNV 435 A GND RIFNP Q +DP+ ++ W+ EL V Sbjct: 480 VAGVGNDPRGNDRIFNPVKQAFDYDPKAEYVLAWVDELRGV 520 >gi|327484059|gb|AEA78466.1| Cryptochrome [Vibrio cholerae LMA3894-4] Length = 485 Score = 103 bits (257), Expect = 6e-20, Method: Compositional matrix adjust. Identities = 116/466 (24%), Positives = 194/466 (41%), Gaps = 42/466 (9%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 ++LVWL+ DLR+TD+ L AA S + +++ P S R F++ SL + Sbjct: 4 INLVWLKRDLRLTDHAPLQAAL-TSGRPTLLLYLFEPMLLGDAHYSERHWRFVWQSLQAI 62 Query: 69 QKSLSQ-KGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127 + L+Q KG V + +W C + + Y EV ++ L Sbjct: 63 NRDLAQSKGEVLIV--------TSDW--QTCFARIAERYAIEVIYSHQEVGLACTFQRDL 112 Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQ------NLVQADLRSLPVPA 181 C+ D P + + Q K + + +++ +L +A+ L A Sbjct: 113 ALAQWCQQHDIVWHQLPYAAVIRGAQTRKNWDEHWQQVMRSPCCDPDLTRANWLKLDAAA 172 Query: 182 IRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAI-- 239 + L S+IP + M G A L F + Y P++ Sbjct: 173 LGLR-----SDIPATWQSKQAG---MQTGGSDMAWATLEDFFARRGREYYRSISSPSLAR 224 Query: 240 QGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFS----WLNELIWREFYRHLM 295 S++SPYL+ G +S R+ + L + + + A S W I + M Sbjct: 225 HACSRMSPYLAWGNISLREMYQTLLKHWSVAGFRRSLIALSSRLHWHCHFIQKFESECEM 284 Query: 296 AFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRM 355 F C+ + + ++ + + L AW+ G+TG P++DA MR L G+++ R+R Sbjct: 285 EFR---CVNRAYDSLLQQSS-DAPAAQLAAWQTGHTGIPLVDACMRCLIQTGYLNFRMRA 340 Query: 356 ITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQW-AASTGNDSVPYFRIFNPTIQ 414 + S L + VDWR G Y LD + + +Q A TG +++ RI+NPT Q Sbjct: 341 MLVSVLTHHMNVDWRAGVTYLAQLFLDFEPGIHYPQFQMQAGVTGTNTI---RIYNPTKQ 397 Query: 415 GKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPI 460 + D +G FI W+PEL VP + P WL + Y +P+ Sbjct: 398 AQEHDSEGQFIHKWVPELAQVPVPLLFEP--WLMTPLEAQMYQVPL 441 >gi|40063354|gb|AAR38165.1| deoxyribodipyrimidine photolyase family protein [uncultured marine bacterium 580] Length = 478 Score = 103 bits (256), Expect = 7e-20, Method: Compositional matrix adjust. Identities = 123/489 (25%), Positives = 215/489 (43%), Gaps = 44/489 (8%) Query: 9 VHLVWLRNDLRITDNKALY-AACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67 ++VWL+ DLR+TD+ LY A C D + + ++I P R FI SL Sbjct: 5 TNIVWLKRDLRLTDHAPLYEATCR--DEQFLVLYIYEPSLINDSHTDERHWRFIQQSLSV 62 Query: 68 VQKSLSQKGIVFQYHQCS-NFDDSIEWLDSYCLQQRVTKLFYNRQYEIN-EVRRDKLLEK 125 ++K L++ Q Q S + ++ + Q +T +F + + + RDK L+K Sbjct: 63 MEKILAK-----QSKQLSIAYGEADQIFSEIINQHEITNVFSHEETGLKLTYERDKKLKK 117 Query: 126 RLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQ--NLVQADLRSLPVPAIR 183 + I + + G LN+ K + + I+ NL +A++ S P Sbjct: 118 IFNAKKIQWHEYQTNAVIRG--LNNRKTWEKQWNKVMREEIKTINLAEANIISHNFPNY- 174 Query: 184 LTGPVTPSNIPRFF-DYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGT 242 +IP+F D +Q P + Q +H + + + ++ + D + Sbjct: 175 --------SIPKFRNDLNYQ---PGGCLPGQKEMHDFFETRGQDYFKFISKPD-RSRTSC 222 Query: 243 SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPS-- 300 S+LSPY++ G LS R+ + L + + + A S + L W + H + Y S Sbjct: 223 SRLSPYIAYGNLSMREVYQTLLKSWNKTGWRRSMAALS--SRLHW---HCHFIQKYESEI 277 Query: 301 ----VCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMI 356 + + + + + K+ N + AW G TG+P+IDA+MR L G+++ R+R + Sbjct: 278 DIEDLPINRGYKDFPYKV-INCEHEDFLAWANGETGYPLIDASMRALKKTGYLNFRMRAM 336 Query: 357 TASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGK 416 SF ++ W++ ++ + LD + + Q A G + RI+NP+ Q + Sbjct: 337 VVSFACHYFMIHWKLVAKHLATLFLDFEPGIHYPQIQMQA--GVTGINTIRIYNPSKQLQ 394 Query: 417 RFDPQGTFIRHWLPELNNVPTQYIHA-PHSWLDKNDLSLN-YPLPIVDHKKACHHTLNQY 474 DP FIR W+ EL++ +YI P D S N YP P D + + N Sbjct: 395 DHDPDTKFIRDWIDELSDQDKEYILGLPDDNFDLFSNSQNFYPTPAYDFFERTKYAKNLL 454 Query: 475 YAAKKQSLL 483 + KK SL+ Sbjct: 455 WQWKKSSLV 463 >gi|295113007|emb|CBL31644.1| Deoxyribodipyrimidine photolyase [Enterococcus sp. 7L76] Length = 111 Score = 103 bits (256), Expect = 7e-20, Method: Compositional matrix adjust. Identities = 50/90 (55%), Positives = 61/90 (67%), Gaps = 6/90 (6%) Query: 380 LLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQY 439 L+D D A+N GGWQWAASTG D+VPYFRIFNP IQ K+FD G FI+ ++PEL VP +Y Sbjct: 2 LIDYDAANNIGGWQWAASTGTDAVPYFRIFNPIIQSKKFDNDGQFIKKYVPELKQVPQKY 61 Query: 440 IHAPHSWLDK------NDLSLNYPLPIVDH 463 IH P+ + L NYP PIVD+ Sbjct: 62 IHQPNLMNEALQTQYHVHLGENYPKPIVDY 91 >gi|262190301|ref|ZP_06048568.1| deoxyribodipyrimidine photolyase/cryptochrome family protein [Vibrio cholerae CT 5369-93] gi|262033809|gb|EEY52282.1| deoxyribodipyrimidine photolyase/cryptochrome family protein [Vibrio cholerae CT 5369-93] Length = 504 Score = 103 bits (256), Expect = 8e-20, Method: Compositional matrix adjust. Identities = 116/466 (24%), Positives = 194/466 (41%), Gaps = 42/466 (9%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 ++LVWL+ DLR+TD+ L AA S + +++ P S R F++ SL + Sbjct: 4 INLVWLKRDLRLTDHAPLQAAL-TSGRPTLLLYLFEPMLLGDAHYSERHWRFVWQSLQAI 62 Query: 69 QKSLSQ-KGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127 + L+Q KG V + +W C + + Y EV ++ L Sbjct: 63 NRDLAQSKGEVLIV--------TSDW--QTCFARIAERYAIEAIYSHQEVGLACTFQRDL 112 Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQ------NLVQADLRSLPVPA 181 C+ D P + + Q K + + +++ +L +A+ L A Sbjct: 113 ALAQWCQQHDIVWHEFPYAAVIRGAQTRKNWDEHWQQVMRSPCCDPDLTRANWLKLDAAA 172 Query: 182 IRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAI-- 239 + L S+IP + M G A L F + Y P++ Sbjct: 173 LGLR-----SDIPATWQSKQAG---MQTGGSDMAWATLEDFFARRGREYYRSISSPSLAR 224 Query: 240 QGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFS----WLNELIWREFYRHLM 295 S++SPYL+ G +S R+ + L + + + A S W I + M Sbjct: 225 HACSRMSPYLAWGNISLREMYQTLLKHWSVAGFRRSLIALSSRLHWHCHFIQKFESECEM 284 Query: 296 AFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRM 355 F C+ + + ++ + + L AW+ G+TG P++DA MR L G+++ R+R Sbjct: 285 EFR---CVNRAYDSLLQQSS-DAPAAQLAAWQTGHTGIPLVDACMRCLIQTGYLNFRMRA 340 Query: 356 ITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAAS-TGNDSVPYFRIFNPTIQ 414 + S L + VDWR G Y LD + + +Q A TG +++ RI+NPT Q Sbjct: 341 MLVSVLTHHMNVDWRAGVTYLAQLFLDFEPGIHYPQFQMQAGVTGTNTI---RIYNPTKQ 397 Query: 415 GKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPI 460 + D +G FI W+PEL VP + P WL + Y +P+ Sbjct: 398 AQEHDSEGQFIHKWVPELAQVPVPLLFEP--WLMTPLEAQMYQVPL 441 >gi|149925501|ref|ZP_01913765.1| deoxyribodipyrimidine photolyase [Limnobacter sp. MED105] gi|149825618|gb|EDM84826.1| deoxyribodipyrimidine photolyase [Limnobacter sp. MED105] Length = 453 Score = 103 bits (256), Expect = 8e-20, Method: Compositional matrix adjust. Identities = 116/498 (23%), Positives = 204/498 (40%), Gaps = 68/498 (13%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSD--AKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 + ++W + DLR++D+ L+ A N+ V+ ++I P Q + + F++ L Sbjct: 1 MQVLWFKRDLRLSDHMPLFEAMRNAKHHGLVLPLYIHEPSQILDAHTARQHQLFVHECLD 60 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQY-EINEVRRDKLLEK 125 +Q+ ++ G ++++ L + Q + T L+ +++ + + +RD+ + Sbjct: 61 DLQQQFAKVGGYLH----EELGEAVDVLAALHAQFKFTHLWAHQETTQFAQYQRDRAVA- 115 Query: 126 RLQHRVICKSFDDSVL---LPPGSILNHALQMYKVYTPFRKAL---IQNLVQADLRSLPV 179 CKS + V+ LP ++ T +A I+N +L++ Sbjct: 116 -----AWCKS--EGVVFHELPQNNVQRARGNKADFQTYLNRAAQEEIKNPAGRNLQAFFA 168 Query: 180 PAIRLTGPVTPSNIPRFF--DYPFQAIDPMFPIGEQNALHILRKF---CKEKVYYYVEQR 234 P R + N+P D P + G A + KF K K Y + Sbjct: 169 P--RPPPVLKRCNVPNAAGEDKPLR-----MKGGRTQARAVAAKFFTPAKLKSYPFSISS 221 Query: 235 DIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVD---------LLIKPKSGAFSWLNEL 285 + A G S+LSPYL+ GV+S R+ +L V+ L+ K + A +++ L Sbjct: 222 PLKAWNGCSRLSPYLAYGVVSDREVLQKLNA-LVNTVHGQGDSVLISKVEDAARFYVDRL 280 Query: 286 IWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNT 345 IWR+ Y L + E E N++ L AW+ G TGF IDA L Sbjct: 281 IWRQGY--LQQLENHTGLETDAFYGDEPAEVNQE--FLNAWQHGRTGFAYIDACQHFLQQ 336 Query: 346 IGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPY 405 GW++ R R SF L + W+ Y Q LD + A + G Q ++G Sbjct: 337 TGWLNMRARATLVSFACVQLGLPWQPVALYLAQQFLDFEPAIHYG--QVRIASGTSHFSQ 394 Query: 406 FRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKK 465 +++P Q DP+G F++ WLP YP PI+D+ + Sbjct: 395 MLVYDPLKQQAEQDPKGEFVKRWLPGYGTA-------------------GYPAPIIDNAE 435 Query: 466 ACHHTLNQYYAAKKQSLL 483 + + +A ++ LL Sbjct: 436 SLKQGKARLHAMRQNRLL 453 >gi|302745158|gb|ADL62682.1| cryptochrome 2b [Phreatichthys andruzzii] Length = 180 Score = 102 bits (255), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 57/161 (35%), Positives = 84/161 (52%), Gaps = 8/161 (4%) Query: 313 KIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK-DLLVDWRI 371 +I W+++ L W + TGFP IDA M QL GW+H R FL + DL ++W Sbjct: 8 RIPWDRNPEALAKWAEAKTGFPWIDAIMTQLRQEGWIHYLARNAVTCFLTRGDLWINWEE 67 Query: 372 GEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPE 431 G + F LLD D + N G W S + +F + P G+R DP G FIR +LP Sbjct: 68 GMKIFEELLLDADWSVNAGSWL-CHSCSSFFQQFFHCYCPVGFGRRIDPNGDFIRCYLPV 126 Query: 432 LNNVPTQYIHAPHSWLD------KNDLSLNYPLPIVDHKKA 466 L + P ++I+ P + D K + ++YP P+V+H +A Sbjct: 127 LRDFPAKFIYDPWNAPDDVQRAAKCVIGMDYPKPMVNHAEA 167 >gi|269965812|ref|ZP_06179907.1| conserved hypothetical protein [Vibrio alginolyticus 40B] gi|269829547|gb|EEZ83786.1| conserved hypothetical protein [Vibrio alginolyticus 40B] Length = 343 Score = 102 bits (255), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 76/241 (31%), Positives = 114/241 (47%), Gaps = 16/241 (6%) Query: 211 GEQNALHILRKFCKEKVYYYVEQRDIPAIQGT--SQLSPYLSIGVLSPRQCWNRLKEE-- 266 G + A L F + Y P T ++LSPYL+ G +S R+ + L + Sbjct: 44 GSRLAWKTLEDFFHRRGRDYYRSISSPTASRTACTRLSPYLAWGNISLREVYQYLLKHWQ 103 Query: 267 ---FVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLL 323 F LI S W I + + M FY C+ + + P ++ D L Sbjct: 104 VAGFRRSLIA-LSSRLHWHCHFIQKFESEYDMEFY---CVNRAYEPLIKQSS-TFDEEKL 158 Query: 324 QAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDG 383 AWK G+TG P+IDA MR L+ G+++ R+R + SFL + +DWR+G + LD Sbjct: 159 AAWKSGHTGVPLIDACMRCLHHTGYINFRMRAMLVSFLTHHMNMDWRVGVTHLAQLFLDF 218 Query: 384 DLASNNGGWQW-AASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHA 442 + + +Q A TG +++ RI+NP Q + DP GTFI W+PEL VP + Sbjct: 219 EPGIHYPQFQMQAGVTGTNTI---RIYNPIKQAQEHDPNGTFIYKWVPELQMVPPPLLFE 275 Query: 443 P 443 P Sbjct: 276 P 276 >gi|154305828|ref|XP_001553315.1| hypothetical protein BC1G_08145 [Botryotinia fuckeliana B05.10] gi|150853030|gb|EDN28222.1| hypothetical protein BC1G_08145 [Botryotinia fuckeliana B05.10] Length = 651 Score = 102 bits (255), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 67/220 (30%), Positives = 105/220 (47%), Gaps = 26/220 (11%) Query: 242 TSQLSPYLSIGVLSPRQCWNRLK---------EEFVDLLIKPKS---GAFSWLNELIWRE 289 +++LS YL++G ++ RQ + + + DL K G + EL+WR+ Sbjct: 301 STKLSAYLALGSITSRQIHSSMSIFENGSDSDNRYKDLEGYGKGENEGTYGVRFELLWRD 360 Query: 290 FYRHLM-AFYPSVCMGKPF-------IPWT------EKIEWNKDSHLLQAWKQGYTGFPI 335 + R F P + F W+ + + + +++ + G TG Sbjct: 361 YMRLCTRKFGPKLFQLGGFKDEENAHSKWSRLDSPRDGVSKEQIQEIIERFLNGTTGMGF 420 Query: 336 IDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWA 395 IDA+ R+ G+ NR R ASFL K L +DWRIG E++ L+D D++SN G WQ+ Sbjct: 421 IDASQRECYHTGYTSNRARQNVASFLAKHLYIDWRIGAEWYECMLVDYDVSSNWGNWQYV 480 Query: 396 ASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNV 435 A GND RIFNP Q +DP+ ++ W+ EL V Sbjct: 481 AGVGNDPRGNDRIFNPVKQAFDYDPKAEYVLAWVDELRGV 520 >gi|229515760|ref|ZP_04405219.1| deoxyribodipyrimidine photolyase/cryptochrome family protein [Vibrio cholerae TMA 21] gi|229347529|gb|EEO12489.1| deoxyribodipyrimidine photolyase/cryptochrome family protein [Vibrio cholerae TMA 21] Length = 504 Score = 102 bits (255), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 116/466 (24%), Positives = 194/466 (41%), Gaps = 42/466 (9%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 ++LVWL+ DLR+TD+ L AA S + +++ P S R F++ SL + Sbjct: 4 INLVWLKRDLRLTDHAPLQAAL-TSGRPTLLLYLFEPMLLGDAHYSERHWRFVWQSLQAI 62 Query: 69 QKSLSQ-KGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127 + L+Q KG V + +W C + + Y EV ++ L Sbjct: 63 NRDLAQSKGEVLIV--------TSDW--QTCFARIAERYAIEAIYSHQEVGLACTFQRDL 112 Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQ------NLVQADLRSLPVPA 181 C+ D P + + Q K + + +++ +L +A+ L A Sbjct: 113 ALAQWCQQHDIVWHEFPYAAVIRGAQTRKNWDEHWQQVMRSPCCDPDLTRANWLKLDAAA 172 Query: 182 IRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAI-- 239 + L S+IP + M G A L F + Y P++ Sbjct: 173 LGLR-----SDIPATWQSKQAG---MQTGGSDMAWATLEDFFARRGREYYRSISSPSLAR 224 Query: 240 QGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFS----WLNELIWREFYRHLM 295 S++SPYL+ G +S R+ + L + + + A S W I + M Sbjct: 225 HACSRMSPYLAWGNISLREMYQTLLKHWSVAGFRRSLIALSSRLHWHCHFIQKFESECEM 284 Query: 296 AFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRM 355 F C+ + + ++ + + L AW+ G+TG P++DA MR L G+++ R+R Sbjct: 285 EFR---CVNRAYDSLLQQSS-DVPAAQLAAWQTGHTGIPLVDACMRCLIQTGYLNFRMRA 340 Query: 356 ITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAAS-TGNDSVPYFRIFNPTIQ 414 + S L + VDWR G Y LD + + +Q A TG +++ RI+NPT Q Sbjct: 341 MLVSVLTHHMNVDWRAGVTYLAQLFLDFEPGIHYPQFQMQAGVTGTNTI---RIYNPTKQ 397 Query: 415 GKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPI 460 + D +G FI W+PEL VP + P WL + Y +P+ Sbjct: 398 AQEHDSEGQFIHKWVPELAQVPVPLLFEP--WLMTPLEAQMYQVPL 441 >gi|170878123|gb|ACB38886.1| putative 6-4 photolyase [Cercospora zeae-maydis] Length = 691 Score = 102 bits (255), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 96/335 (28%), Positives = 142/335 (42%), Gaps = 65/335 (19%) Query: 184 LTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYY--YVEQRDIPAI-- 239 + GP + P + A GE L L + K++ Y + + + PA Sbjct: 214 IAGPKGDFSPPTLEELGMPAATSPHKGGESVVLERLEEMFKDEDYTGTFQKPKTSPAAFE 273 Query: 240 -QGTSQLSPYLSIGVLSPRQCWNRLKEEFV--DLLIKPKSGA-FSWLNELIWREFY---R 292 Q T SPYL G LS R ++R+ E + KP S S +L++R+ Y + Sbjct: 274 PQSTFLTSPYLHFGALSCRYFYHRVAEIVAKRNKEKKPTSSPPESLAGQLLFRDMYFAAQ 333 Query: 293 HLMAFYPSVCMGKP---FIPW--------------------TEKIE-------------- 315 + + +G FIPW +E+ E Sbjct: 334 AALGWQFGQTLGNSHCRFIPWHLPSKVDMSSKRITGAHEIDSEETELWLQRWTHGITGFP 393 Query: 316 W--NKDSHL-LQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK-DLLVDWRI 371 W ++++ L LQ W G TGFP ID MRQL GW+H+ R A FL + + W Sbjct: 394 WIDSEETELWLQRWTHGTTGFPWIDVIMRQLRHEGWIHHLARHSVACFLTRGGCYISWER 453 Query: 372 GEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPE 431 G E F L+D + A N G WQW + T ++R ++P GK++D G FIR ++PE Sbjct: 454 GLEVFEELLIDHESACNIGNWQWLSCTAF-FAQFYRCYSPVAFGKKWDENGDFIRKFVPE 512 Query: 432 LNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKA 466 L + P +YI+ PH P+ D KKA Sbjct: 513 LAHFPKKYIYEPHK------------APLADQKKA 535 >gi|254225326|ref|ZP_04918938.1| cryptochrome Cry2 [Vibrio cholerae V51] gi|125622167|gb|EAZ50489.1| cryptochrome Cry2 [Vibrio cholerae V51] Length = 504 Score = 102 bits (254), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 118/467 (25%), Positives = 194/467 (41%), Gaps = 44/467 (9%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 ++LVWL+ DLR+TD+ L AA S + +++ P S R F++ SL + Sbjct: 4 INLVWLKRDLRLTDHAPLQAAL-TSGRPTLLLYLFEPMLLGDAHYSERHWRFVWQSLQAI 62 Query: 69 QKSLSQ-KGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127 + L+Q KG V + +W C + + Y EV ++ L Sbjct: 63 NRDLAQSKGEVLIV--------TSDW--QTCFSRLAERYAIEAIYSHQEVGLACTFQRDL 112 Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQ------NLVQADLRSLPVPA 181 C+ D P + + Q K + + +++ +L +A+ L A Sbjct: 113 ALAQWCQQHDIVWHEFPYAAVIRGAQTRKNWDEHWQQVMRSPCCDPDLTRANWLKLDAAA 172 Query: 182 IRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAI-- 239 + L S+IP + M G A L F + Y P++ Sbjct: 173 LGLR-----SDIPATWQSKQAG---MQTGGSDMAWATLEDFFVRRGREYYRSISSPSLAR 224 Query: 240 QGTSQLSPYLSIGVLSPRQCWNRLKEE-----FVDLLIKPKSGAFSWLNELIWREFYRHL 294 S++SPYL+ G +S R+ + L + F LI S W I + Sbjct: 225 HACSRMSPYLAWGNISLREMYQTLLKHWSVAGFRRSLIA-LSSRLHWHCHFIQKFESECE 283 Query: 295 MAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLR 354 M F C+ + + ++ + + L AW+ G+TG P++DA MR L G+++ R+R Sbjct: 284 MEFR---CVNRAYDSLLQQSS-DVPAAQLAAWQTGHTGIPLVDACMRCLIQTGYLNFRMR 339 Query: 355 MITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAAS-TGNDSVPYFRIFNPTI 413 + S L + VDWR G Y LD + + +Q A TG +++ RI+NPT Sbjct: 340 AMLVSVLTHHMNVDWRAGVTYLAQLFLDFEPGIHYPQFQMQAGVTGTNTI---RIYNPTK 396 Query: 414 QGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPI 460 Q + D +G FI W+PEL VP + P WL + Y +P+ Sbjct: 397 QAQEHDSEGQFIHKWVPELAQVPVPLLFEP--WLMTPLEAQMYQVPL 441 >gi|323228031|gb|EGA12174.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp. enterica serovar Montevideo str. MB110209-0055] Length = 84 Score = 102 bits (254), Expect = 1e-19, Method: Composition-based stats. Identities = 46/82 (56%), Positives = 58/82 (70%) Query: 398 TGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYP 457 TG D+ PYFRIFNPT QG+RFD G FIR WLP L ++P + IH P W +K + L+YP Sbjct: 1 TGTDAAPYFRIFNPTTQGERFDRDGEFIRQWLPALRDIPGKAIHEPWRWAEKAGVVLDYP 60 Query: 458 LPIVDHKKACHHTLNQYYAAKK 479 PIV+HK+A TL+ Y AA+K Sbjct: 61 RPIVEHKQARIATLSAYEAARK 82 >gi|183179386|ref|ZP_02957597.1| cryptochrome Cry2 [Vibrio cholerae MZO-3] gi|183012797|gb|EDT88097.1| cryptochrome Cry2 [Vibrio cholerae MZO-3] Length = 504 Score = 102 bits (254), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 118/467 (25%), Positives = 194/467 (41%), Gaps = 44/467 (9%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 ++LVWL+ DLR+TD+ L AA S + +++ P S R F++ SL + Sbjct: 4 INLVWLKRDLRLTDHAPLQAAL-TSGRPTLLLYLFEPMLLGDAHYSERHWRFVWQSLQAI 62 Query: 69 QKSLSQ-KGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127 + L+Q KG V + +W C + + Y EV ++ L Sbjct: 63 NRDLAQSKGEVLIV--------TSDW--QTCFARIAERYAIEAIYSHQEVGLACTFQRDL 112 Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQ------NLVQADLRSLPVPA 181 C+ D P + + Q K + + +++ +L +A+ L A Sbjct: 113 ALAQWCQQHDIVWHEFPYAAVIRGAQTRKNWDDHWQQVMRSPCCDPDLTRANWLKLDAAA 172 Query: 182 IRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAI-- 239 + L S+IP + M G A L F + Y P++ Sbjct: 173 LGLR-----SDIPATWQSKQAG---MQTGGSDMAWATLEDFFVRRGREYYRSISSPSLAR 224 Query: 240 QGTSQLSPYLSIGVLSPRQCWNRLKEE-----FVDLLIKPKSGAFSWLNELIWREFYRHL 294 S++SPYL+ G +S R+ + L + F LI S W I + Sbjct: 225 HACSRMSPYLAWGNISLREMYQTLLKHWSVAGFRRSLIA-LSSRLHWHCHFIQKFESECE 283 Query: 295 MAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLR 354 M F C+ + + ++ + + L AW+ G+TG P++DA MR L G+++ R+R Sbjct: 284 MEFR---CVNRAYDSLLQQSS-DAPAAQLAAWQTGHTGIPLVDACMRCLIQTGYLNFRMR 339 Query: 355 MITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAAS-TGNDSVPYFRIFNPTI 413 + S L + VDWR G Y LD + + +Q A TG +++ RI+NPT Sbjct: 340 AMLVSVLTHHMNVDWRAGVTYLAQLFLDFEPGIHYPQFQMQAGVTGTNTI---RIYNPTK 396 Query: 414 QGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPI 460 Q + D +G FI W+PEL VP + P WL + Y +P+ Sbjct: 397 QAQEHDSEGHFIHKWVPELAQVPVPLLFEP--WLMTPLEAQMYQVPL 441 >gi|74696815|sp|Q7SI68|CRYD_NEUCR RecName: Full=Putative cryptochrome DASH, mitochondrial; Flags: Precursor gi|38567324|emb|CAE76612.1| related to deoxyribodipyrimidine photo-lyase [Neurospora crassa] Length = 745 Score = 102 bits (254), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 72/225 (32%), Positives = 103/225 (45%), Gaps = 34/225 (15%) Query: 242 TSQLSPYLSIGVLSPRQCWNRLK--EEFVDLLIKPKSGAFSWLN--------ELIWREFY 291 +++LS YL+ G ++ RQ + L E+ K G N EL+WR++ Sbjct: 300 STKLSAYLAQGCVTARQIHHALVAYEDGTGTKYKGADGFGEGDNQGTETVRMELLWRDYM 359 Query: 292 RHLMAFYPSVCM------GK--PFIPWTEKIEW----------------NKDSHLLQAWK 327 R Y GK + +K W K S +L + Sbjct: 360 RLCHQKYGDKLFRVEGFNGKHTDYEGEDKKYGWRTANTSIALPGQEPTPEKVSEILARFN 419 Query: 328 QGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLAS 387 G TG +IDA+ R+L G+ NR R ASFL K L +DWR G E++ L+D D++S Sbjct: 420 AGTTGMGLIDASQRELIHTGYTSNRTRQNVASFLAKHLEIDWRYGAEWYEMLLVDYDVSS 479 Query: 388 NNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPEL 432 N WQ+ A GND RIFNP Q +D GT++R W+PE+ Sbjct: 480 NWANWQYVAGVGNDPRGAARIFNPVKQAFDYDKDGTYVRTWVPEV 524 >gi|229521502|ref|ZP_04410921.1| deoxyribodipyrimidine photolyase/cryptochrome family protein [Vibrio cholerae TM 11079-80] gi|229341600|gb|EEO06603.1| deoxyribodipyrimidine photolyase/cryptochrome family protein [Vibrio cholerae TM 11079-80] Length = 499 Score = 102 bits (253), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 115/466 (24%), Positives = 193/466 (41%), Gaps = 42/466 (9%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 ++LVWL+ DLR+TD+ L AA S + +++ P S R F++ SL + Sbjct: 4 INLVWLKRDLRLTDHAPLQAAL-TSGRPTLLLYLFEPMLLGDAHYSERHWRFVWQSLQAI 62 Query: 69 QKSLSQ-KGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127 + L+Q KG V + +W C + + Y EV ++ L Sbjct: 63 NRDLAQSKGEVLIV--------TSDW--QTCFSRLAERYAIEAIYSHQEVGLACTFQRDL 112 Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQ------NLVQADLRSLPVPA 181 C+ D P + + Q K + + +++ +L +A+ L Sbjct: 113 ALAQWCQQHDIVWHEFPYAAVIRGAQTRKNWDEHWQQVMRSPCCDPDLTRANWLKLDAAV 172 Query: 182 IRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAI-- 239 + L S+IP + M G A L F + Y P++ Sbjct: 173 LGLR-----SDIPATWQSKQAG---MQTGGSDMAWATLEDFFARRGREYYRSISSPSLAR 224 Query: 240 QGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFS----WLNELIWREFYRHLM 295 S++SPYL+ G +S R+ + L + + + A S W I + M Sbjct: 225 HACSRMSPYLAWGNISLREMYQTLLKHWSVAGFRRSLIALSSRLHWHCHFIQKFESECEM 284 Query: 296 AFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRM 355 F C+ + + ++ + + L AW+ G+TG P++DA MR L G+++ R+R Sbjct: 285 EFR---CVNRAYDSLLQQSS-DAPAAQLAAWQTGHTGIPLVDACMRCLIQTGYLNFRMRA 340 Query: 356 ITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAAS-TGNDSVPYFRIFNPTIQ 414 + S L + VDWR G Y LD + + +Q A TG +++ RI+NPT Q Sbjct: 341 MLVSVLTHHMNVDWRAGVTYLAQLFLDFEPGIHYPQFQMQAGVTGTNTI---RIYNPTKQ 397 Query: 415 GKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPI 460 + D +G FI W+PEL VP + P WL + Y +P+ Sbjct: 398 AQEHDSEGQFIHKWVPELAQVPVPLLFEP--WLMTPLEAQMYQVPL 441 >gi|72012168|ref|XP_786331.1| PREDICTED: similar to cryptochrome [Strongylocentrotus purpuratus] gi|115937430|ref|XP_001183029.1| PREDICTED: similar to cryptochrome [Strongylocentrotus purpuratus] Length = 450 Score = 102 bits (253), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 113/447 (25%), Positives = 183/447 (40%), Gaps = 44/447 (9%) Query: 13 WLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQKSL 72 W R+ LR+ DN AL + VFI E + F++ L+ + + L Sbjct: 9 WFRHGLRLHDNPALLEG-MTLGKEFYPVFIFDNEVAGTKTSGYNRWRFLHDCLVDLDEQL 67 Query: 73 SQKG---IVFQYHQCSNFDDS-IEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128 G VF C F + +EW Y + + + + RR K L K + Sbjct: 68 KAAGGRLFVFHGDPCLIFKEMFLEWGVRYLTFESDPEPIWTER-----DRRVKALCKEM- 121 Query: 129 HRVICKSFDDSVLLPPGSILNHALQMYKV-YTPFRKALIQNLVQADLRSLPVPAIRLTGP 187 +V C L P I+ + Y+ F + + + + R +P P + Sbjct: 122 -KVECIERVSHTLWNPDIIIEKNGGTPPITYSMFMECVTE--IGHPPRPMPDPILTKVNM 178 Query: 188 VTPSNIPRFFDYPFQAI-----------DPMFPIGEQNALHI--LRKFCKEKVY---YYV 231 PS+ P + ++ GE AL + +R +E+ + Y + Sbjct: 179 KIPSDFEERCALPSLEVMGVNMECTEQEKKVWKGGETRALELFRVRILHEEEAFKGGYCL 238 Query: 232 EQRDIPAIQGTSQ-LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNEL----- 285 + +P + GT + LS YL G LS R+ + ++ + + ++ + L E+ Sbjct: 239 PNQYMPDLLGTPKSLSAYLRFGCLSVRRFYWKIHDTYSEVRSVSLFLVYRRLEEVSPSHL 298 Query: 286 ----IWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMR 341 IWRE++ + M+ P IEW +D L+AW G TG+P IDA M+ Sbjct: 299 TAQVIWREYF-YTMSVGNIHFNKMKENPICLNIEWKEDDEKLKAWTDGRTGYPWIDACMK 357 Query: 342 QLNTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGN 400 QL GW+H R TA FL + DL + W G + F LLD D + G W W +S+ Sbjct: 358 QLKYEGWIHQVGRHATACFLTRGDLWISWEDGLQVFDKYLLDADWSICAGNWMWISSSAF 417 Query: 401 DS-VPYFRIFNPTIQGKRFDPQGTFIR 426 + + F P G+R DP G ++R Sbjct: 418 EKFLQCPNCFCPVRYGRRMDPTGEYVR 444 >gi|164428444|ref|XP_965722.2| hypothetical protein NCU00582 [Neurospora crassa OR74A] gi|157072149|gb|EAA36486.2| conserved hypothetical protein [Neurospora crassa OR74A] Length = 722 Score = 102 bits (253), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 72/225 (32%), Positives = 103/225 (45%), Gaps = 34/225 (15%) Query: 242 TSQLSPYLSIGVLSPRQCWNRLK--EEFVDLLIKPKSGAFSWLN--------ELIWREFY 291 +++LS YL+ G ++ RQ + L E+ K G N EL+WR++ Sbjct: 290 STKLSAYLAQGCVTARQIHHALVAYEDGTGTKYKGADGFGEGDNQGTETVRMELLWRDYM 349 Query: 292 RHLMAFYPSVCM------GK--PFIPWTEKIEW----------------NKDSHLLQAWK 327 R Y GK + +K W K S +L + Sbjct: 350 RLCHQKYGDKLFRVEGFNGKHTDYEGEDKKYGWRTANTSIALPGQEPTPEKVSEILARFN 409 Query: 328 QGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLAS 387 G TG +IDA+ R+L G+ NR R ASFL K L +DWR G E++ L+D D++S Sbjct: 410 AGTTGMGLIDASQRELIHTGYTSNRTRQNVASFLAKHLEIDWRYGAEWYEMLLVDYDVSS 469 Query: 388 NNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPEL 432 N WQ+ A GND RIFNP Q +D GT++R W+PE+ Sbjct: 470 NWANWQYVAGVGNDPRGAARIFNPVKQAFDYDKDGTYVRTWVPEV 514 >gi|157130453|ref|XP_001655724.1| DNA photolyase [Aedes aegypti] gi|108881984|gb|EAT46209.1| DNA photolyase [Aedes aegypti] Length = 321 Score = 102 bits (253), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 75/232 (32%), Positives = 105/232 (45%), Gaps = 15/232 (6%) Query: 211 GEQNALHILRKFCKEKVYYYVEQRDIPAIQG----TSQLSPYLSIGVLSPRQCWNRLKEE 266 GE AL L + + K + R Q + LSPYL G LS R + +L + Sbjct: 93 GETEALARLERHLERKAWVASFGRPKMTPQSLLARQTGLSPYLRFGCLSTRLFYYQLTDL 152 Query: 267 FVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSV--CMGKPFIPWTEKIEWNKDSHLLQ 324 + IK S +L+WREF+ P+ G P +I W++++ L Sbjct: 153 YKK--IKKACPPLSLYGQLLWREFFYCAATKNPNFDKMAGNPIC---VQISWDRNAEALA 207 Query: 325 AWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDG 383 W G TGFP IDA M QL GW+H+ R A FL + DL + G + F LLD Sbjct: 208 KWASGQTGFPWIDAIMTQLREEGWIHHLARHAVACFLTRGDLWISCEEGMKVFEELLLDA 267 Query: 384 DLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNV 435 D + N G W +S +F + P G++ DP G +IR +LP L V Sbjct: 268 DWSVNAGMWLSCSSFFQQ---FFHCYCPVKFGRKADPNGDYIRRYLPVLKEV 316 >gi|15641404|ref|NP_231036.1| deoxyribodipyrimidine photolyase, putative [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121590807|ref|ZP_01678134.1| cryptochrome Cry2 [Vibrio cholerae 2740-80] gi|153817778|ref|ZP_01970445.1| cryptochrome Cry2 [Vibrio cholerae NCTC 8457] gi|153821321|ref|ZP_01973988.1| cryptochrome Cry2 [Vibrio cholerae B33] gi|227081563|ref|YP_002810114.1| putative deoxyribodipyrimidine photolyase [Vibrio cholerae M66-2] gi|229505031|ref|ZP_04394541.1| deoxyribodipyrimidine photolyase/cryptochrome family protein [Vibrio cholerae BX 330286] gi|229511299|ref|ZP_04400778.1| deoxyribodipyrimidine photolyase/cryptochrome family protein [Vibrio cholerae B33] gi|229518417|ref|ZP_04407861.1| deoxyribodipyrimidine photolyase/cryptochrome family protein [Vibrio cholerae RC9] gi|229608035|ref|YP_002878683.1| deoxyribodipyrimidine photolyase/cryptochrome family protein [Vibrio cholerae MJ-1236] gi|254848511|ref|ZP_05237861.1| cryptochrome Cry2 [Vibrio cholerae MO10] gi|255745773|ref|ZP_05419721.1| deoxyribodipyrimidine photolyase/cryptochrome family protein [Vibrio cholera CIRS 101] gi|262158947|ref|ZP_06030059.1| deoxyribodipyrimidine photolyase/cryptochrome family protein [Vibrio cholerae INDRE 91/1] gi|298498528|ref|ZP_07008335.1| cryptochrome Cry2 [Vibrio cholerae MAK 757] gi|81858115|sp|Q9KS67|CRY2_VIBCH RecName: Full=Cryptochrome-like protein cry2 gi|9655888|gb|AAF94550.1| deoxyribodipyrimidine photolyase, putative [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121547333|gb|EAX57450.1| cryptochrome Cry2 [Vibrio cholerae 2740-80] gi|126511716|gb|EAZ74310.1| cryptochrome Cry2 [Vibrio cholerae NCTC 8457] gi|126521139|gb|EAZ78362.1| cryptochrome Cry2 [Vibrio cholerae B33] gi|227009451|gb|ACP05663.1| putative deoxyribodipyrimidine photolyase [Vibrio cholerae M66-2] gi|229345132|gb|EEO10106.1| deoxyribodipyrimidine photolyase/cryptochrome family protein [Vibrio cholerae RC9] gi|229351264|gb|EEO16205.1| deoxyribodipyrimidine photolyase/cryptochrome family protein [Vibrio cholerae B33] gi|229357254|gb|EEO22171.1| deoxyribodipyrimidine photolyase/cryptochrome family protein [Vibrio cholerae BX 330286] gi|229370690|gb|ACQ61113.1| deoxyribodipyrimidine photolyase/cryptochrome family protein [Vibrio cholerae MJ-1236] gi|254844216|gb|EET22630.1| cryptochrome Cry2 [Vibrio cholerae MO10] gi|255736848|gb|EET92245.1| deoxyribodipyrimidine photolyase/cryptochrome family protein [Vibrio cholera CIRS 101] gi|262029132|gb|EEY47784.1| deoxyribodipyrimidine photolyase/cryptochrome family protein [Vibrio cholerae INDRE 91/1] gi|297542861|gb|EFH78911.1| cryptochrome Cry2 [Vibrio cholerae MAK 757] Length = 504 Score = 101 bits (252), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 115/466 (24%), Positives = 193/466 (41%), Gaps = 42/466 (9%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 ++LVWL+ DLR+TD+ L AA S + +++ P S R F++ SL + Sbjct: 4 INLVWLKRDLRLTDHAPLQAAL-TSGRPTLLLYLFEPMLLGDAHYSERHWRFVWQSLQAI 62 Query: 69 QKSLSQ-KGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127 + L+Q KG V + +W C + + Y EV ++ L Sbjct: 63 NRDLAQSKGEVLIV--------TSDW--QTCFARIAERYAIEAIYSHQEVGLACTFQRDL 112 Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQ------NLVQADLRSLPVPA 181 C+ D P + + Q K + + +++ +L +A+ L Sbjct: 113 ALAQWCQQHDIVWHEFPYAAVIRGAQTRKNWDEHWQQVMRSPCCDPDLTRANWLKLDAAT 172 Query: 182 IRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAI-- 239 + L S+IP + M G A L F + Y P++ Sbjct: 173 LGLR-----SDIPATWQSKQAG---MQTGGSDMAWATLEDFFARRGREYYRSISSPSLAR 224 Query: 240 QGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFS----WLNELIWREFYRHLM 295 S++SPYL+ G +S R+ + L + + + A S W I + M Sbjct: 225 HACSRMSPYLAWGNISLREMYQTLLKHWSVAGFRRSLIALSSRLHWHCHFIQKFESECEM 284 Query: 296 AFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRM 355 F C+ + + ++ + + L AW+ G+TG P++DA MR L G+++ R+R Sbjct: 285 EFR---CVNRAYDSLLQQSS-DAPAAQLAAWQTGHTGIPLVDACMRCLIQTGYLNFRMRA 340 Query: 356 ITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAAS-TGNDSVPYFRIFNPTIQ 414 + S L + VDWR G Y LD + + +Q A TG +++ RI+NPT Q Sbjct: 341 MLVSVLTHHMNVDWRAGVTYLAQLFLDFEPGIHYPQFQMQAGVTGTNTI---RIYNPTKQ 397 Query: 415 GKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPI 460 + D +G FI W+PEL VP + P WL + Y +P+ Sbjct: 398 AQEHDSEGQFIHKWVPELAQVPVPLLFEP--WLMTPLEAQMYQVPL 441 >gi|88860348|ref|ZP_01134986.1| putative deoxyribodipyrimidine photolyase [Pseudoalteromonas tunicata D2] gi|88817546|gb|EAR27363.1| putative deoxyribodipyrimidine photolyase [Pseudoalteromonas tunicata D2] Length = 500 Score = 101 bits (252), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 115/454 (25%), Positives = 197/454 (43%), Gaps = 45/454 (9%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 +++VW + DLR++D+ L A +S V+ ++ P +AR F++ SL + Sbjct: 5 INIVWFKRDLRLSDHAPLQHAFASS-IPVLLIYNFEPLLLDDPHYTARHWRFVWQSLADL 63 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEV-RRDKLLEKRL 127 + L++ F+ + I L Q + LF +++ +N RDK + Sbjct: 64 NQQLAR----FKTQIYIFSEPMIALLQRLGEQFEIRGLFSHQEIGLNNTFMRDKAVS--- 116 Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVY--TPFRKALIQNLVQADLRSLPVPAIRLT 185 C S I+ H Q V R+ Q + L + P + Sbjct: 117 ---AWCHS---------NKIVWHETQTGAVVRGKKHRRDWQQLWQNSILSQVSTPNWQQL 164 Query: 186 GPVTPSNIPRF-FDYPFQAIDPMFPIG-EQNALHILRKFCKEKVYYYVEQRDIPAIQ--G 241 V ++ D +Q +D F +G + A ++ F E+ Y + P++ Sbjct: 165 NTVYLTDYQELKLDERYQMVDENFQLGGPKQARALIASFFVERGVGYQKGISSPSLSRLH 224 Query: 242 TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIW-----REFYRHLMA 296 S+LSPYL+ G +S RQ +++ + + ++++ L W ++F Sbjct: 225 CSRLSPYLAWGNVSLRQVYHQAIGHYEIAKRGWRKPLAAFISRLHWHCHFMQKFESESRI 284 Query: 297 FYPSVCMGKPFIPW--TEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLR 354 + + M P+ E++E H L W+ G TG PIIDA MR L G+++ R+R Sbjct: 285 EFEPLNMAYLHYPYRTDEQVE-----HDLALWQHGNTGIPIIDACMRCLKHTGYINFRMR 339 Query: 355 MITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAAS-TGNDSVPYFRIFNPTI 413 + SF+ L + W+ LD + + Q AS TG +++ R++NP Sbjct: 340 AMLVSFVTHHLNISWQQASMPLAQYFLDFEPGIHYPQIQMQASVTGMNTI---RLYNPIK 396 Query: 414 QGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWL 447 Q + DP G FIR W PEL N+P++YIH P WL Sbjct: 397 QSQDQDPDGVFIRTWCPELKNLPSEYIHQP--WL 428 >gi|313230294|emb|CBY07998.1| unnamed protein product [Oikopleura dioica] Length = 429 Score = 101 bits (252), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 103/369 (27%), Positives = 158/369 (42%), Gaps = 33/369 (8%) Query: 14 LRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHG---ISARQSHFIYASLLQVQK 70 R DLRI DN +L AA + K++ VFI PEQ + S F+ SL QV K Sbjct: 73 FRRDLRIFDNTSLIAAAADG-FKILPVFIFPPEQIDEKENEYFSHPCVQFMCLSLSQVHK 131 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL-QH 129 L + G + + +N D L + ++ N Y V RD+ + ++ Sbjct: 132 ELVKIGSKLNFIKLANADA----LTQLKKEVNFDAVYSNEDYSFYAVSRDQEVRSWCREN 187 Query: 130 RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNL-VQADLRSLPVP----AIRL 184 RV +D ++ L+ + + + F + N V+ P + L Sbjct: 188 RVKFVQKEDYGMMKLDENLDKHKRPIRTHAAFMRGFRANCTVRRPTEVAWTPDNFVSFDL 247 Query: 185 TGPVTPSNIPRFFDY-PFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS 243 + I F++ P A+ P G + L+ F EK+ Y Q ++ Q TS Sbjct: 248 NCEIPEQQIHTFYENNPKLAVTP----GRSGGMANLKSF--EKLVDYRAQHNM-LDQETS 300 Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCM 303 + SP+ G +S R+ + R + F + F + +L WRE Y + A P Sbjct: 301 RSSPHTKFGTVSVRETYWRGMDLFGE--------DFHVIRQLGWREMYLKVYAARPEWQK 352 Query: 304 GKPFIP-WTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLV 362 G+ E ++W+ D + Q W QG TGFPI+DA MR+LN G+ HNR RM AS L Sbjct: 353 GQSIHKILDEHVDWSYDEEVFQKWCQGETGFPIVDAGMRELNETGFQHNRARMNCASVLT 412 Query: 363 --KDLLVDW 369 L+ W Sbjct: 413 WGGQLMAAW 421 >gi|229523510|ref|ZP_04412915.1| deoxyribodipyrimidine photolyase/cryptochrome family protein [Vibrio cholerae bv. albensis VL426] gi|229337091|gb|EEO02108.1| deoxyribodipyrimidine photolyase/cryptochrome family protein [Vibrio cholerae bv. albensis VL426] Length = 506 Score = 101 bits (252), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 115/466 (24%), Positives = 193/466 (41%), Gaps = 42/466 (9%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 ++LVWL+ DLR+TD+ L AA S + +++ P S R F++ SL + Sbjct: 6 INLVWLKRDLRLTDHAPLQAAL-TSGRPTLLLYLFEPMLLGDAHYSERHWRFVWQSLQAI 64 Query: 69 QKSLSQ-KGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127 + L+Q KG V + +W C + + Y EV ++ L Sbjct: 65 NRDLAQSKGEVLIV--------TSDW--QTCFARIAERYAIEAIYSHQEVGLACTFQRDL 114 Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQ------NLVQADLRSLPVPA 181 C+ D P + + Q K + + +++ +L +A+ L Sbjct: 115 ALAQWCQQHDIVWHEFPYAAVIRGAQTRKNWDEHWQQVMRSPCCDPDLTRANWLKLDAAT 174 Query: 182 IRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAI-- 239 + L S+IP + M G A L F + Y P++ Sbjct: 175 LGLR-----SDIPATWQSKQAG---MQTGGSDMAWATLEDFFARRGREYYRSISSPSLAR 226 Query: 240 QGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFS----WLNELIWREFYRHLM 295 S++SPYL+ G +S R+ + L + + + A S W I + M Sbjct: 227 HACSRMSPYLAWGNISLREMYQTLLKHWSVAGFRRSLIALSSRLHWHCHFIQKFESECEM 286 Query: 296 AFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRM 355 F C+ + + ++ + + L AW+ G+TG P++DA MR L G+++ R+R Sbjct: 287 EFR---CVNRAYDSLLQQSS-DAPAAQLAAWQTGHTGIPLVDACMRCLIQTGYLNFRMRA 342 Query: 356 ITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAAS-TGNDSVPYFRIFNPTIQ 414 + S L + VDWR G Y LD + + +Q A TG +++ RI+NPT Q Sbjct: 343 MLVSVLTHHMNVDWRAGVTYLAQLFLDFEPGIHYPQFQMQAGVTGTNTI---RIYNPTKQ 399 Query: 415 GKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPI 460 + D +G FI W+PEL VP + P WL + Y +P+ Sbjct: 400 AQEHDSEGHFIHKWVPELAQVPVPLLFEP--WLMTPLEAQMYQVPL 443 >gi|297624491|ref|YP_003705925.1| DNA photolyase FAD-binding protein [Truepera radiovictrix DSM 17093] gi|297165671|gb|ADI15382.1| DNA photolyase FAD-binding protein [Truepera radiovictrix DSM 17093] Length = 486 Score = 101 bits (252), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 78/260 (30%), Positives = 120/260 (46%), Gaps = 26/260 (10%) Query: 238 AIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGA------FSWLNELIWREFY 291 A++ S+LSPYL++G LS RQ + ++L +G+ ++ L WR+ + Sbjct: 206 ALRYASRLSPYLALGNLSVRQVFAASARRRLELRAHLGAGSRFERALLAFETRLRWRDAF 265 Query: 292 RHLMAFYPSV---CMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGW 348 + +YP + + F E + L+A+ G TG+P++DA MR L GW Sbjct: 266 IQKLEWYPRTEFENLNRGFDGMREGLPEVLARERLEAFAAGRTGYPMVDACMRALQAGGW 325 Query: 349 MHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWA---ASTGNDSVPY 405 ++ R+R + SF L +DWR + +LL G W +G V Sbjct: 326 LNFRMRALLVSFACYHLWLDWRP-----VGRLLARGWLDYEPGIHWPQLQMQSGVTGVHA 380 Query: 406 FRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSW--LDKNDLSL----NYPLP 459 RI++P Q + DP G FIR W+PEL +PT + P + L + L +YP P Sbjct: 381 PRIYSPAKQARDHDPTGAFIRRWVPELAGLPTHDLAEPWAAPPLVQTMLGCVVGKHYPAP 440 Query: 460 IVDHKKA---CHHTLNQYYA 476 IVD K A TL + A Sbjct: 441 IVDPKAAYAEARRTLGAWRA 460 Score = 38.5 bits (88), Expect = 2.3, Method: Compositional matrix adjust. Identities = 21/85 (24%), Positives = 41/85 (48%), Gaps = 4/85 (4%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 V+LVW + DLR+ D+ L A V+ +++ PE + S + SLL + Sbjct: 7 VNLVWFKRDLRVADHAPLREAARRG--AVLCLYVYEPEVYGAETFSGAHLELLNQSLLSL 64 Query: 69 QKSLSQKG--IVFQYHQCSNFDDSI 91 + L+ +G +VF+ + +++ Sbjct: 65 EAELAARGGRLVFRVGEMPAVLEAL 89 >gi|77462528|ref|YP_352032.1| deoxyribodipyrimidine photo-lyase type I [Rhodobacter sphaeroides 2.4.1] gi|77386946|gb|ABA78131.1| Deoxyribodipyrimidine photo-lyase type I [Rhodobacter sphaeroides 2.4.1] Length = 454 Score = 101 bits (251), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 120/494 (24%), Positives = 191/494 (38%), Gaps = 93/494 (18%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 L+W RNDLR+ D+ AL A +D +V+ + I P +W S RQ F L ++ Sbjct: 4 LIWFRNDLRVADHPALARA---ADDRVLPLAIVDPAEWADPARSGRQWAFRAECLADLRA 60 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130 L+ G D+ L C R+ R Sbjct: 61 DLAALGAPLAV----RVGDAQAVLSKLCKLHRIG-------------------------R 91 Query: 131 VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTP 190 ++C +D P + L+ ALQ + T ++ A P+PA+ GP+ P Sbjct: 92 ILC--LED----PAFAELDLALQAWAGGTGLDFIRLKPGAGAPAALTPLPAVE-PGPIPP 144 Query: 191 SNIPRFFD--YPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRD--IPAIQGTSQLS 246 + R + P + P G +L+ F + + Y + R+ + A + +S+LS Sbjct: 145 ARALRLAEDRCPHRQ-----PGGRPQGQLLLQSFLERRGALYRDGRNRLLQAERASSRLS 199 Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP 306 P+L+ G LS +EE + + + ++ R L AF ++ G P Sbjct: 200 PHLAAGTLS--------REEVLAAVAARLAERPD-------ADWVRSLGAFRAALASGAP 244 Query: 307 FI-----------------PWTEKIEWNKDSHLLQ--AWKQGYTGFPIIDAAMRQLNTIG 347 + ++ E D+ L+ A G TG P +DAA+R + G Sbjct: 245 GARGAVCPPGRPGGGGSPRGYLDQTEGEADALRLRLAALHAGETGLPFVDAALRAMAASG 304 Query: 348 WMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFR 407 W+ RLR + AS + L + + + L D ++ WA V R Sbjct: 305 WLPARLRGMLASVALHHLGLSEQAAGAALAAGLTD-----HSPPIHWAQMR---RVALGR 356 Query: 408 IFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLD-KNDLSLNYPLPIVD--HK 464 +P DP G F R WLPEL VP + + AP W + L YP P+VD Sbjct: 357 PVDPERLAGVLDPDGAFTRRWLPELAEVPDRVLQAPWRWEGARGLLGRRYPEPLVDPSAA 416 Query: 465 KACHHTLNQYYAAK 478 +A TL + A+ Sbjct: 417 RAAGRTLARRPTAR 430 >gi|153830168|ref|ZP_01982835.1| cryptochrome Cry2 [Vibrio cholerae 623-39] gi|148874347|gb|EDL72482.1| cryptochrome Cry2 [Vibrio cholerae 623-39] Length = 504 Score = 101 bits (251), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 115/466 (24%), Positives = 192/466 (41%), Gaps = 42/466 (9%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 ++LVWL+ DLR+TD+ L AA S + +++ P S R F++ SL + Sbjct: 4 INLVWLKRDLRLTDHAPLQAAL-TSGRPTLLLYLFEPMLLGDAHYSERHWRFVWQSLQAI 62 Query: 69 QKSLSQ-KGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127 + L+Q KG V + +W C + + Y EV ++ L Sbjct: 63 NRDLAQSKGEVLIV--------TSDW--QTCFARIAERYAIEAIYSHQEVGLACTFQRDL 112 Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQ------NLVQADLRSLPVPA 181 C+ D P + + Q K + + +++ +L +A+ L Sbjct: 113 ALAQWCQQHDIVWHEFPYAAVIRGAQTRKNWDEHWQQVMRSPCCDPDLTRANWLKLDAAT 172 Query: 182 IRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAI-- 239 + L S+IP + M G A L F + Y P++ Sbjct: 173 LGLR-----SDIPATWQSKQAG---MQTGGSDMAWATLEDFFARRGREYYRSISSPSLAR 224 Query: 240 QGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFS----WLNELIWREFYRHLM 295 S++SPYL+ G +S R+ + L + + + A S W I + M Sbjct: 225 HACSRMSPYLAWGNISLREMYQTLLKHWSVAGFRRSLIALSSRLHWHCHFIQKFESECEM 284 Query: 296 AFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRM 355 F C+ + + ++ + L AW+ G+TG P++DA MR L G+++ R+R Sbjct: 285 EFR---CVNRAYDSLLQQSS-QAPAAQLAAWQTGHTGIPLVDACMRCLIQTGYLNFRMRA 340 Query: 356 ITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAAS-TGNDSVPYFRIFNPTIQ 414 + S L + VDWR G Y LD + + +Q A TG +++ RI+NPT Q Sbjct: 341 MLVSVLTHHMNVDWRAGVTYLAQLFLDFEPGIHYPQFQMQAGVTGTNTI---RIYNPTKQ 397 Query: 415 GKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPI 460 + D +G FI W+PEL VP + P WL + Y +P+ Sbjct: 398 AQEHDSEGQFIHKWVPELAQVPVPLLFEP--WLMTPLEAQMYQVPL 441 >gi|52699557|gb|AAU86901.1| cryptochrome 2 [Sylvia borin] Length = 244 Score = 101 bits (251), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 52/147 (35%), Positives = 79/147 (53%), Gaps = 8/147 (5%) Query: 326 WKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGD 384 W +G TGFP IDA M QL GW+H+ R A FL + DL + W G F LLD D Sbjct: 1 WAEGKTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWISWESGVRVFDELLLDAD 60 Query: 385 LASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPH 444 + N G W W + + +F + P G+R DP G +++ +LP+L P++YI+ P Sbjct: 61 FSVNAGSWMWLSCSAFFQQ-FFHCYCPVGFGRRTDPSGDYVKRYLPKLKGFPSRYIYEPW 119 Query: 445 SWLD------KNDLSLNYPLPIVDHKK 465 + + K + ++YP P+V+H + Sbjct: 120 NAPESVQKAAKCIIGVDYPKPMVNHAE 146 >gi|121727525|ref|ZP_01680637.1| cryptochrome Cry2 [Vibrio cholerae V52] gi|147673506|ref|YP_001216950.1| cryptochrome Cry2 [Vibrio cholerae O395] gi|153212697|ref|ZP_01948354.1| cryptochrome Cry2 [Vibrio cholerae 1587] gi|262169310|ref|ZP_06037002.1| deoxyribodipyrimidine photolyase/cryptochrome family protein [Vibrio cholerae RC27] gi|121630109|gb|EAX62512.1| cryptochrome Cry2 [Vibrio cholerae V52] gi|124116347|gb|EAY35167.1| cryptochrome Cry2 [Vibrio cholerae 1587] gi|146315389|gb|ABQ19928.1| cryptochrome Cry2 [Vibrio cholerae O395] gi|227013307|gb|ACP09517.1| putative deoxyribodipyrimidine photolyase [Vibrio cholerae O395] gi|262022123|gb|EEY40832.1| deoxyribodipyrimidine photolyase/cryptochrome family protein [Vibrio cholerae RC27] Length = 504 Score = 101 bits (251), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 115/466 (24%), Positives = 193/466 (41%), Gaps = 42/466 (9%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 ++LVWL+ DLR+TD+ L AA S + +++ P S R F++ SL + Sbjct: 4 INLVWLKRDLRLTDHAPLQAAL-TSGRPTLLLYLFEPMLLGDAHYSERHWRFVWQSLQAI 62 Query: 69 QKSLSQ-KGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127 + L+Q KG V + +W C + + Y EV ++ L Sbjct: 63 NRDLAQSKGEVLIV--------TSDW--QTCFARIAERYAIEAIYSHQEVGLACTFQRDL 112 Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQ------NLVQADLRSLPVPA 181 C+ D P + + Q K + + +++ +L +A+ L Sbjct: 113 ALAQWCQQHDIVWHEFPYAAVIRGAQTRKNWDEHWQQVMRSPCCDPDLTRANWLKLDAAT 172 Query: 182 IRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAI-- 239 + L S+IP + M G A L F + Y P++ Sbjct: 173 LGLR-----SDIPATWQSKQAG---MQTGGSDMAWATLEDFFVRRGREYYRSISSPSLAR 224 Query: 240 QGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFS----WLNELIWREFYRHLM 295 S++SPYL+ G +S R+ + L + + + A S W I + M Sbjct: 225 HACSRMSPYLAWGNISLREMYQTLLKHWSVAGFRRSLIALSSRLHWHCHFIQKFESECEM 284 Query: 296 AFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRM 355 F C+ + + ++ + + L AW+ G+TG P++DA MR L G+++ R+R Sbjct: 285 EFR---CVNRAYDSLLQQSS-DAPAAQLAAWQTGHTGIPLVDACMRCLIQTGYLNFRMRA 340 Query: 356 ITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAAS-TGNDSVPYFRIFNPTIQ 414 + S L + VDWR G Y LD + + +Q A TG +++ RI+NPT Q Sbjct: 341 MLVSVLTHHMNVDWRAGVTYLAQLFLDFEPGIHYPQFQMQAGVTGTNTI---RIYNPTKQ 397 Query: 415 GKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPI 460 + D +G FI W+PEL VP + P WL + Y +P+ Sbjct: 398 AQEHDSEGQFIHKWVPELAQVPVPLLFEP--WLMTPLEAQMYQVPL 441 >gi|153825249|ref|ZP_01977916.1| cryptochrome Cry2 [Vibrio cholerae MZO-2] gi|149741077|gb|EDM55136.1| cryptochrome Cry2 [Vibrio cholerae MZO-2] Length = 504 Score = 100 bits (250), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 115/466 (24%), Positives = 192/466 (41%), Gaps = 42/466 (9%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 ++LVWL+ DLR+TD+ L AA S + +++ P S R F++ SL + Sbjct: 4 INLVWLKRDLRLTDHAPLQAAL-TSGRPTLLLYLFEPMLLGDAHYSERHWRFVWQSLQAI 62 Query: 69 QKSLSQ-KGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127 + L+Q KG V + +W C + + Y EV ++ L Sbjct: 63 NRDLAQSKGEVLIV--------TSDW--QTCFARIAERYAIEAIYSHQEVGLACTFQRDL 112 Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQ------NLVQADLRSLPVPA 181 C+ D P + + Q K + + +++ +L A+ L Sbjct: 113 ALAQWCQQHDIVWHEFPYAAVIRGAQTRKNWDEHWQQVMRSPCCDPDLTSANWLKLDAAT 172 Query: 182 IRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAI-- 239 + L S+IP + M G A L F + Y P++ Sbjct: 173 LGLR-----SDIPATWQSKQAG---MQTGGSDMAWATLEDFFVRRGREYYRSISSPSLAR 224 Query: 240 QGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFS----WLNELIWREFYRHLM 295 S++SPYL+ G +S R+ + L + + + A S W I + M Sbjct: 225 HACSRMSPYLAWGNISLREMYQTLLKHWSVAGFRRSLIALSSRLHWHCHFIQKFESECEM 284 Query: 296 AFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRM 355 F C+ + + ++ + + L AW+ G+TG P++DA MR L G+++ R+R Sbjct: 285 EFR---CVNRAYDSLLQQSS-DAPAAQLAAWQTGHTGIPLVDACMRCLIQTGYLNFRMRA 340 Query: 356 ITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAAS-TGNDSVPYFRIFNPTIQ 414 + S L + VDWR G Y LD + + +Q A TG +++ RI+NPT Q Sbjct: 341 MLVSVLTHHMNVDWRAGVTYLAQLFLDFEPGIHYPQFQMQAGVTGTNTI---RIYNPTKQ 397 Query: 415 GKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPI 460 + D +G FI W+PEL VP + P WL + Y +P+ Sbjct: 398 AQEHDSEGQFIHKWVPELAQVPVPLLFEP--WLMTPLEAQMYQIPL 441 >gi|13543860|gb|AAH06077.1| Cry2 protein [Mus musculus] Length = 243 Score = 100 bits (250), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 55/145 (37%), Positives = 78/145 (53%), Gaps = 8/145 (5%) Query: 328 QGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLA 386 +G TGFP IDA M QL GW+H+ R A FL + DL V W G F LLD D + Sbjct: 1 EGKTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWVSWESGVRVFDELLLDADFS 60 Query: 387 SNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSW 446 N G W W + + +F + P G+R DP G +IR +LP+L P++YI+ P + Sbjct: 61 VNAGSWMWLSCSAFFQQ-FFHCYCPVGFGRRTDPSGDYIRRYLPKLKGFPSRYIYEPWNA 119 Query: 447 LD------KNDLSLNYPLPIVDHKK 465 + K + ++YP PIV+H + Sbjct: 120 PESVQKAAKCIIGVDYPRPIVNHAE 144 >gi|94501553|ref|ZP_01308071.1| Deoxyribodipyrimidine photolyase [Oceanobacter sp. RED65] gi|94426371|gb|EAT11361.1| Deoxyribodipyrimidine photolyase [Oceanobacter sp. RED65] Length = 440 Score = 100 bits (250), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 74/227 (32%), Positives = 110/227 (48%), Gaps = 20/227 (8%) Query: 211 GEQNAL-HILRKFCKEKVYYYVEQRD-IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFV 268 GEQ L H+ F Y R+ + + +S+ S +L+ G LS R L++ F Sbjct: 203 GEQKGLEHLYDYFNGSYALQYKATRNALDGWENSSKFSYWLAQGSLSVRLILQELRQ-FE 261 Query: 269 DLLIKPKSGAFSWLNELIWREFYRHLMAFY-------PSVCMGKPFIPWTEKIEWNKDSH 321 L +S ++ EL+WREF++ FY + +P + + Sbjct: 262 SLHSNNESTEHLYM-ELLWREFFQWYSHFYGKQLFYFSGIQKKRPLTTFYPQA------- 313 Query: 322 LLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLL 381 + W +G+T +P+++A M QL T G+M NR R I AS L+ +L VDWR G + F LL Sbjct: 314 -FRMWLEGHTEWPLVNACMNQLRTTGYMSNRGRQIVASCLLNELKVDWRAGAQAFEHYLL 372 Query: 382 DGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHW 428 D D+A+N G WQ+ A G D R FN Q + +DP FI W Sbjct: 373 DYDVAANWGNWQYIAGVGADPRG-GRHFNIEKQTQLYDPDNLFIDKW 418 >gi|169609250|ref|XP_001798044.1| hypothetical protein SNOG_07712 [Phaeosphaeria nodorum SN15] gi|160701810|gb|EAT85178.2| hypothetical protein SNOG_07712 [Phaeosphaeria nodorum SN15] Length = 582 Score = 100 bits (250), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 86/286 (30%), Positives = 129/286 (45%), Gaps = 44/286 (15%) Query: 198 DYPFQA-IDPMFPI---GEQNAL----HILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYL 249 D PF+ D F I GE++ L H++R Y + + + +++LS YL Sbjct: 190 DIPFKLWADEKFYIDDGGEEHGLDRIAHLIRSGAMSS--YKATRNGMLGLDFSTKLSAYL 247 Query: 250 SIGVLSPRQCWNRLKEEFVDLLIKPKS----------GAFSWLNELIWREFYR------- 292 + G ++ RQ +K+ F + + K G + EL+WR++ R Sbjct: 248 AQGHITARQVHWAMKD-FEEGRGEGKGIAGYGKGENEGTAAVRFELLWRDYMRLCMRKFG 306 Query: 293 -HLMAFYP----SVCMGKPFI----------PWTEKIEWNKDSHLLQAWKQGYTGFPIID 337 + A Y G I P + K+ Q ++ G TG +ID Sbjct: 307 HKMFALYGIQPHRKGQGDEPIYKKRWRMVHKPNGAGDDHKKNMETFQRFRSGRTGVGLID 366 Query: 338 AAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAAS 397 A+ R+L G+ NR R ASFL L +DWRIG E++ L+D D+ASN G WQ+ A Sbjct: 367 ASNRELFCTGYTSNRARQNVASFLSSHLDIDWRIGAEWYEMLLIDYDVASNWGNWQYVAG 426 Query: 398 TGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAP 443 GND RIFNP Q +D +G +I+ W+PEL + AP Sbjct: 427 VGNDPRQ-GRIFNPVKQAFDYDGKGEYIKAWVPELRQLKLTKTVAP 471 >gi|221638381|ref|YP_002524643.1| Deoxyribodipyrimidine photo-lyase type I [Rhodobacter sphaeroides KD131] gi|221159162|gb|ACM00142.1| Deoxyribodipyrimidine photo-lyase type I [Rhodobacter sphaeroides KD131] Length = 454 Score = 100 bits (250), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 119/490 (24%), Positives = 179/490 (36%), Gaps = 85/490 (17%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 L+W RNDLR+ D+ AL A +D +V+ + I P +W S RQ F L ++ Sbjct: 4 LIWFRNDLRVADHPALARA---ADDRVLPLAIVDPAEWADPARSGRQWAFRTECLADLRA 60 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130 L+ G D L C R+ ++F E Sbjct: 61 DLAALGAPLAV----RVGDPQAVLSKLCRLHRIRRIFCLEDPAFAE-------------- 102 Query: 131 VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTP 190 L+ ALQ + T ++ A P+PA+ GP+ P Sbjct: 103 -----------------LDLALQAWAAGTGLELIRLKPGPGAPAALTPLPAVE-PGPIPP 144 Query: 191 SNIPRFFD--YPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRD--IPAIQGTSQLS 246 + R + P + P G +L+ F + + Y + R+ + A + +S+LS Sbjct: 145 ARALRLAEDRCPHRQ-----PGGRPQGQLLLQSFLERRGALYRDGRNRLLQAERASSRLS 199 Query: 247 PYLSIGVLS---------------PRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFY 291 P+L+ G LS P W R F L +GA + E Sbjct: 200 PHLAAGTLSREEVLAAVAARLAERPDADWVRSLGAFRAALASGATGARGAVCPPAAPEGA 259 Query: 292 RHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHN 351 + + GKP + L A G TG P +DAA+R + GW+ Sbjct: 260 APPEDIW-TRLKGKP----------DALRLRLAALHAGETGLPFVDAALRAMAASGWLPA 308 Query: 352 RLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNP 411 RLR + AS + L + + + L D ++ WA V R +P Sbjct: 309 RLRGMLASVALHHLGLSEQAAGAALAAGLTD-----HSPPIHWAQMR---RVALGRPVDP 360 Query: 412 TIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLD-KNDLSLNYPLPIVD--HKKACH 468 DP G F R WLPEL VP + + AP W + L YP P+VD +A Sbjct: 361 ERLAGVLDPDGAFTRRWLPELAEVPDRVLQAPWRWEGARGLLGRRYPEPLVDPSAARAAG 420 Query: 469 HTLNQYYAAK 478 TL + A+ Sbjct: 421 RTLARRPTAR 430 >gi|254286160|ref|ZP_04961120.1| cryptochrome Cry2 [Vibrio cholerae AM-19226] gi|150423829|gb|EDN15770.1| cryptochrome Cry2 [Vibrio cholerae AM-19226] Length = 504 Score = 100 bits (249), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 115/466 (24%), Positives = 192/466 (41%), Gaps = 42/466 (9%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 ++LVWL+ DLR+TD+ L AA S + +++ P S R F++ SL + Sbjct: 4 INLVWLKRDLRLTDHAPLQAAL-TSGRPTLLLYLFEPMLLGDAHYSERHWRFVWQSLQAI 62 Query: 69 QKSLSQ-KGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127 + L+Q KG V + +W C + + Y EV ++ L Sbjct: 63 NRDLAQSKGEVLIV--------TSDW--QTCFSRIAERHAIEAIYSHQEVGLACTFQRDL 112 Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQ------NLVQADLRSLPVPA 181 C+ D P + + Q K + + +++ +L +A+ L Sbjct: 113 ALAQWCQQHDIVWHEFPYAAVIRGAQTRKNWDEHWQQVMRSPCCDPDLTRANWLKLDAAT 172 Query: 182 IRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAI-- 239 + L S+IP + M G A L F + Y P++ Sbjct: 173 LGLR-----SDIPATWQSKQAG---MQTGGSDMAWTTLEDFFARRGRDYYRSISSPSLAR 224 Query: 240 QGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFS----WLNELIWREFYRHLM 295 S++SPYL+ G +S R+ + L + + + A S W I + M Sbjct: 225 HACSRMSPYLAWGNISLREMYQTLLKHWSVAGFRRSLIALSSRLHWHCHFIQKFESECEM 284 Query: 296 AFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRM 355 F C+ + + ++ + L AW+ G+TG P++DA MR L G+++ R+R Sbjct: 285 EFR---CVNRAYDSLLQQSS-QATTAQLAAWQTGHTGIPLVDACMRCLIQTGYLNFRMRA 340 Query: 356 ITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAAS-TGNDSVPYFRIFNPTIQ 414 + S L + VDWR G Y LD + + +Q A TG +++ RI+NPT Q Sbjct: 341 MLVSVLTHHMNVDWRAGVTYLAQLFLDFEPGIHYPQFQMQAGVTGTNTI---RIYNPTKQ 397 Query: 415 GKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPI 460 + D +G FI W+PEL VP + P WL + Y +P+ Sbjct: 398 AQEHDSEGLFIHKWVPELAQVPVPLLFEP--WLMTPFEAQMYQVPL 441 >gi|254480196|ref|ZP_05093444.1| FAD binding domain of DNA photolyase, putative [marine gamma proteobacterium HTCC2148] gi|214039758|gb|EEB80417.1| FAD binding domain of DNA photolyase, putative [marine gamma proteobacterium HTCC2148] Length = 227 Score = 100 bits (249), Expect = 6e-19, Method: Compositional matrix adjust. Identities = 74/218 (33%), Positives = 104/218 (47%), Gaps = 7/218 (3%) Query: 227 VYYYVEQRD-IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNEL 285 V Y E R+ + + +S LSP+L+ G L+ + L + + L + +EL Sbjct: 7 VTSYKETRNQLDGLFYSSFLSPWLANGSLAVSKLAWELDQ--FEKLHGANDSTRHFYSEL 64 Query: 286 IWREF-YRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLN 344 +WREF YR + S+ K E+ D W G T +P+++A M QL Sbjct: 65 LWREFFYRREVEDSSSLFRAKGTA--RERKLVTFDPRGFARWCAGATDYPLVNALMHQLV 122 Query: 345 TIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVP 404 GWM NR R I AS LV ++ VDWR G +F LLD D ASN G WQ+ A G D Sbjct: 123 ESGWMSNRGRQIAASCLVNEMNVDWRFGAAFFEQHLLDYDAASNYGNWQYIAGVGADPRG 182 Query: 405 YFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHA 442 R F+ Q ++FDP+G F + W P + A Sbjct: 183 G-RHFDLVKQTRQFDPEGEFTQRWEGYCPKQPEHIVDA 219 >gi|189200290|ref|XP_001936482.1| cryptochrome DASH [Pyrenophora tritici-repentis Pt-1C-BFP] gi|187983581|gb|EDU49069.1| cryptochrome DASH [Pyrenophora tritici-repentis Pt-1C-BFP] Length = 675 Score = 100 bits (248), Expect = 7e-19, Method: Compositional matrix adjust. Identities = 69/228 (30%), Positives = 105/228 (46%), Gaps = 27/228 (11%) Query: 242 TSQLSPYLSIGVLSPRQC-WNRLKEEFVDLLIKPK--------SGAFSWLNELIWREFYR 292 +++LS YL+ G ++ RQ W L E + K G + EL+WR++ R Sbjct: 331 STKLSAYLAQGHITARQVHWAMLDFEEGRGPGEKKHAYGQGENEGTAAVRFELLWRDYMR 390 Query: 293 HLMAFYPSVCMG-----------------KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPI 335 M + G K + + K + + ++ G TG + Sbjct: 391 LCMRKFGHKMFGLYGIQDRGAKGSQHKKWKKLYKGEDGEDPQKTMEVFERFRSGRTGVGL 450 Query: 336 IDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWA 395 IDA+ R+L G+ NR R ASFL L +DWR+G E++ L+D D ASN G WQ+ Sbjct: 451 IDASNRELFVTGYTSNRARQNVASFLSSHLNIDWRVGAEWYECFLVDYDAASNWGNWQYV 510 Query: 396 ASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAP 443 A GND R+FNP Q +D +G +I+ W+PEL ++ P Sbjct: 511 AGVGNDPR-QGRVFNPVKQALDYDKRGEYIKAWVPELRDIKLTRTVGP 557 >gi|312212963|emb|CBX93045.1| hypothetical protein [Leptosphaeria maculans] Length = 989 Score = 100 bits (248), Expect = 7e-19, Method: Compositional matrix adjust. Identities = 49/110 (44%), Positives = 66/110 (60%), Gaps = 1/110 (0%) Query: 326 WKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDL 385 ++ G TG +IDA+ R+L G+ NR R ASFL L +DWRIG E++ L D D Sbjct: 752 FRSGRTGVGLIDASNRELFVTGYTSNRARQNVASFLASHLNIDWRIGAEWYECFLTDYDC 811 Query: 386 ASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNV 435 ASN G WQ+ A GND R+FNP Q +DP+G +I+ W+PEL + Sbjct: 812 ASNWGNWQYVAGVGNDPR-QGRVFNPVKQAFDYDPKGEYIKAWVPELRGI 860 >gi|47215847|emb|CAG02310.1| unnamed protein product [Tetraodon nigroviridis] Length = 606 Score = 99.8 bits (247), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 75/232 (32%), Positives = 106/232 (45%), Gaps = 16/232 (6%) Query: 207 MFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS------QLSPYLSIGVLSPRQCW 260 ++P GE AL + + + K + +R P + S LSPYL G LS R + Sbjct: 176 VWPGGETEALTRIERHLERKAWVANFER--PRMNANSLLASPTGLSPYLRFGCLSCRLFY 233 Query: 261 NRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSV--CMGKPFIPWTEKIEWNK 318 +L + + + K S S +L+WREF+ P G P +I W++ Sbjct: 234 FKLTDLYRKV-KKNTSPPLSLYGQLLWREFFYTAATNNPRFDKMEGNPIC---VRIPWDR 289 Query: 319 DSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFM 377 + L W + TGFP IDA M QL GW+H+ R A FL + DL + W G + F Sbjct: 290 NMEALAKWAEAKTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWISWEEGMKVFE 349 Query: 378 SQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWL 429 LLD D + N G W W S + +F + P G+R DP G FI L Sbjct: 350 ELLLDADWSVNAGSWMW-LSCSSFFQQFFHCYCPVGFGRRTDPNGDFISRSL 400 >gi|221124384|ref|XP_002163516.1| PREDICTED: similar to cryptochrome dash [Hydra magnipapillata] Length = 438 Score = 99.0 bits (245), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 66/203 (32%), Positives = 102/203 (50%), Gaps = 8/203 (3%) Query: 229 YYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWR 288 Y + + + +S+ SP+L++G +S + LK + G++ EL+WR Sbjct: 237 YKATRNGLTGMAYSSKWSPWLALGAVSAPELMAALKAH--EREHGTTDGSYWLWFELLWR 294 Query: 289 EFYRHLMAFYPSVCM---GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNT 345 +++R L Y + G +E++ ++ S L W QG TG ++DA MR+L Sbjct: 295 DYFRWLHLQYGAGLYRPKGLLEAAKSERVPHHRRSFTL--WTQGRTGCDLVDAGMRELAC 352 Query: 346 IGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPY 405 G++ NR+R + ASFL+ +L DWR G +F SQLLD D+ SN G W + A G D Sbjct: 353 SGYLSNRMRQVVASFLIYELGCDWRAGAAWFESQLLDFDVYSNQGNWLYIAGLGTDPRG- 411 Query: 406 FRIFNPTIQGKRFDPQGTFIRHW 428 R FN Q DP G + W Sbjct: 412 GRRFNVAKQTADHDPDGAYRALW 434 >gi|46129334|ref|XP_389028.1| hypothetical protein FG08852.1 [Gibberella zeae PH-1] gi|97047717|sp|Q4I1Q6|CRYD_GIBZE RecName: Full=Putative cryptochrome DASH Length = 678 Score = 99.0 bits (245), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 54/139 (38%), Positives = 75/139 (53%), Gaps = 7/139 (5%) Query: 322 LLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLL 381 ++ W +G TG ++DA+ R+L G+ NR R AS+L K L +DWR+G EY+ L+ Sbjct: 387 MIDRWIRGTTGMGLVDASQRELQLTGYTSNRARQNVASYLTKSLGIDWRLGAEYYEQSLI 446 Query: 382 DGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPT---- 437 D D SN G WQ+ AS GND P R FN Q +D G F R W+ E+ ++ Sbjct: 447 DYDTHSNWGNWQYQASCGND--PRSRSFNQVKQAFDYDQDGRFTRTWVNEVKSIDRLEHV 504 Query: 438 -QYIHAPHSWLDKNDLSLN 455 Q P L+K+ LS N Sbjct: 505 FQICTCPKQELEKHGLSDN 523 >gi|332141437|ref|YP_004427175.1| deoxyribodipyrimidine photolyase, putative [Alteromonas macleodii str. 'Deep ecotype'] gi|327551459|gb|AEA98177.1| deoxyribodipyrimidine photolyase, putative [Alteromonas macleodii str. 'Deep ecotype'] Length = 478 Score = 99.0 bits (245), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 113/464 (24%), Positives = 197/464 (42%), Gaps = 53/464 (11%) Query: 1 MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHF 60 + T + ++WL+ DLR+ D++ L+ A S+ +++ ++ P + +S R HF Sbjct: 2 LSDNTKPPITIIWLKRDLRLRDHEPLFRAV-ASNERILLLYCWEPSLIEEPHMSVRHWHF 60 Query: 61 IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSY-------CLQQRVTKLFYNRQYE 113 I S+ + L + V H + D++ ++ + Q+ K+ YNR Sbjct: 61 IQQSIDDINGQLPEHVNVLTLHMEAV--DALAFISRFYTINAVRSYQEIGLKVTYNRDLR 118 Query: 114 I-NEV--RRDKLLEKR-------LQHRVICKSFDDSVLLPPGSILNHALQM-----YKVY 158 + N + RR LE + L HR K+ + S ++ L+ + V+ Sbjct: 119 VANHLNNRRIPFLEAKCGAVIRGLPHRAQWKANWEEYFAE--STYDYDLKRANWVKWNVH 176 Query: 159 TPFRKALIQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHI 218 +KA +L +++ +L + + M P GE+ A + Sbjct: 177 VDIQKA---SLTLSEVSALYAAKKYINKDYLSKYCGVLSEDGLIDFSAMQPGGERRAWQV 233 Query: 219 LRKFCKEKVYYYVEQRDIP--AIQGTSQLSPYLSIGVLSPRQCWN---RLKEEFVDLLIK 273 L+ F ++ YY + P A + S+LSPYL+ G +S +Q + R K + L I Sbjct: 234 LKDFFNDRGQYYHQHISKPEYARRACSRLSPYLAWGNISIKQVYQSVQRQKHKKRALPIH 293 Query: 274 PK----------SGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLL 323 K + W I + H + + P + F P+ + E + Sbjct: 294 EKKRWSRALSALTSRLHWHCHFIQKFESEHSIEWRPMNSAYENF-PYIDGPEAERR---F 349 Query: 324 QAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDG 383 W G TG+P++DA MR L G+++ R+R + SFL L V W Y +Q LD Sbjct: 350 YHWSIGQTGYPLVDACMRALRQTGYLNFRMRAMVTSFLCHHLNVHWIKAAHYLATQFLDF 409 Query: 384 DLASNNGGWQWAAS-TGNDSVPYFRIFNPTIQGKRFDPQGTFIR 426 + + Q AS TG +V R++NP Q K+ DP+G FI+ Sbjct: 410 EPGIHYPQIQMQASVTGIHTV---RLYNPASQSKKLDPEGEFIK 450 >gi|126461462|ref|YP_001042576.1| DNA photolyase domain-containing protein [Rhodobacter sphaeroides ATCC 17029] gi|126103126|gb|ABN75804.1| Deoxyribodipyrimidine photo-lyase type I [Rhodobacter sphaeroides ATCC 17029] Length = 454 Score = 99.0 bits (245), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 119/495 (24%), Positives = 190/495 (38%), Gaps = 95/495 (19%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 L+W RNDLR+ D+ AL A +D +V+ + I P +W S RQ F L ++ Sbjct: 4 LIWFRNDLRVADHPALARA---ADDRVLPLAIVDPAEWADPARSGRQWAFRAECLADLRA 60 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130 L+ G + L C R+ R Sbjct: 61 DLAALGAPLAV----RVGEPQAVLSKLCRLHRIG-------------------------R 91 Query: 131 VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTP 190 ++C +D + L+ ALQ + T ++ A P+PA+ GP+ P Sbjct: 92 ILC--LEDPAF----AELDLALQAWAGGTGLDFIRLKPCAGAPAALTPLPAVE-PGPIPP 144 Query: 191 SNIPRFFD--YPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRD--IPAIQGTSQLS 246 + R + P + P G +L+ F + + Y + R+ + A + +S+LS Sbjct: 145 ARALRLAEDRCPHRQ-----PGGRPQGQLLLQSFLERRGALYRDGRNRLLQAERASSRLS 199 Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP 306 P+L+ G LS +EE + + + ++ R L AF ++ G P Sbjct: 200 PHLAAGTLS--------REEVLAAVAARLAERPD-------ADWVRSLGAFRAALASGAP 244 Query: 307 FIP------------------WTEKIEWNKDSHLLQ--AWKQGYTGFPIIDAAMRQLNTI 346 WT +++ D+ L+ A G TG P +DAA+R + Sbjct: 245 GARGAVCPPAAPEGAAPPEDIWT-RLKGKPDALRLRLAALHAGETGLPFVDAALRAMAAS 303 Query: 347 GWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYF 406 GW+ RLR + AS + L + + + L D ++ WA V Sbjct: 304 GWLPARLRGMLASVALHHLGLSEQAAGAALAAGLTD-----HSPPIHWAQMR---RVALG 355 Query: 407 RIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLD-KNDLSLNYPLPIVD--H 463 R +P DP G F R WLPEL VP + + AP W + L YP P+VD Sbjct: 356 RPVDPERLAGVLDPDGAFTRRWLPELAEVPDRVLQAPWRWEGARGLLGRRYPEPLVDPSA 415 Query: 464 KKACHHTLNQYYAAK 478 +A TL + A+ Sbjct: 416 ARAAGRTLARRPTAR 430 >gi|300771338|ref|ZP_07081214.1| cryptochrome DASH [Sphingobacterium spiritivorum ATCC 33861] gi|300762008|gb|EFK58828.1| cryptochrome DASH [Sphingobacterium spiritivorum ATCC 33861] Length = 425 Score = 98.6 bits (244), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 98/404 (24%), Positives = 173/404 (42%), Gaps = 28/404 (6%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYAS-LLQ 67 V L+W RNDLR DN+ L+ S +I V+ P + + R++ A +L Sbjct: 5 VTLIWFRNDLRFHDNEILFETVSKSPI-IIPVYCFDPRYFSKKSSGHRKTGVHRARFILD 63 Query: 68 VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127 + L +K + S E + + V ++F++R+ E + +E L Sbjct: 64 AVRELKEKFVAMGCDLMSFVGYPEEIIPRLAAKYEVNEVFHHREVASRETIISENVETAL 123 Query: 128 -QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRS-LPVPAIRLT 185 + ++ K F L + + + F+K + + ++ +R P P + +T Sbjct: 124 WKLKINLKHFIGHTLYHKEDLPFPIRDIPNDFMVFKKKIER---ESTVRQPFPTPEVMVT 180 Query: 186 GP-VTPSNIPRF--FDYPFQAIDPMF--PI----GEQNALHILRKFCKEKVYYYVEQRDI 236 P + + IP Y + I PI GE AL + + + + EQ D Sbjct: 181 HPHLEKTTIPTLEELGYTTEEIQTANNNPIHLRGGEDEALKKVEEVLSGQ---FNEQLDY 237 Query: 237 PAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMA 296 LSPY++ G LSP ++++K+ L+ K +L+WR+++R ++ Sbjct: 238 ------MMLSPYIAAGALSPIYLYHKIKDA---KLVLNKKRTEKLTAQLLWRDYFRFMLK 288 Query: 297 FYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMI 356 YP+V K +E + L+ W+ G TG+ ID AM+ L+ G + + ++ I Sbjct: 289 KYPNVFFKKNGTGKSEYSNVETNPEDLKKWQSGQTGYEFIDKAMQFLSQTGNLPSDIKKI 348 Query: 357 TASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGN 400 + F V++ DWR G YF L+D A+ G W A G Sbjct: 349 VSLFFVQEYQGDWRKGASYFEDMLIDYAPATTYGYWAHYAGVGT 392 >gi|303276951|ref|XP_003057769.1| predicted protein [Micromonas pusilla CCMP1545] gi|226460426|gb|EEH57720.1| predicted protein [Micromonas pusilla CCMP1545] Length = 502 Score = 98.6 bits (244), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 83/289 (28%), Positives = 128/289 (44%), Gaps = 41/289 (14%) Query: 181 AIRLTGPVTPSNIPRF---FDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRD-- 235 ++RLT PRF D+ I + I E+ A + F + + Y + Sbjct: 162 SVRLTSLDDLGVSPRFPPGRDWS-SGIRDEWDISERGANEVWASFTRRGLPEYEAEHGRA 220 Query: 236 --IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIW-----R 288 + TS++SPYL G +SPR ++ LK + + L W R Sbjct: 221 DAVAPAASTSRMSPYLRFGQISPRAMYHDLKRADGKRV-----------SRLFWHRVHRR 269 Query: 289 EFYRHLMAFYPSVCMGKPFIPWTEKIEWNKD-------SHLLQAWKQGYTGFPIIDAAMR 341 EF +A +P + + + +W D + +L+ W++G TGFP +DA MR Sbjct: 270 EFAYWQLANWPDMGTKSIRRHYDRRADWIPDPTRDAASAEILRRWREGRTGFPAVDAGMR 329 Query: 342 QLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGND 401 +L T GWMH RM+ A+FL L V W G +F L+D DLA N WQ A +G D Sbjct: 330 RLWTTGWMHQTERMLCATFLCDYLNVHWVHGARWFHDTLVDADLAINAMMWQNAGKSGLD 389 Query: 402 SVPYFRIFNPTIQ------GKRFDPQGTFIRHWLPELNNVPTQYI-HAP 443 + +F+ ++ + DP G I +PEL +P ++ H P Sbjct: 390 Q---WDVFSGSLAPDGSKPCRAHDPLGDAIATRVPELAGLPRGHLRHRP 435 >gi|296135391|ref|YP_003642633.1| DNA photolyase FAD-binding protein [Thiomonas intermedia K12] gi|295795513|gb|ADG30303.1| DNA photolyase FAD-binding protein [Thiomonas intermedia K12] Length = 493 Score = 98.6 bits (244), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 119/489 (24%), Positives = 194/489 (39%), Gaps = 61/489 (12%) Query: 8 SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67 ++ LVW + DLR+ D+ AL+AA +A+F+ PE A+ F + Sbjct: 3 TLALVWFKRDLRVQDHAALHAA--AQCDAALALFVMEPEWIASPECDAQHVQFAADCVAA 60 Query: 68 VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEIN-EVRRDKLLEKR 126 +++SL+Q G+ D + + + R T LF + + RDK R Sbjct: 61 LRESLTQAGLRL----LVRVGDVPQVFEGVRREMRFTHLFSHEETGPGWTYARDK----R 112 Query: 127 LQHRVICKSFDDSVLL---PPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVP-AI 182 + H C+ + V+ P ++ ++K + D +PVP + Sbjct: 113 VAH--WCR--EQGVIWQEWPQNGVVRRLRDRAGWAARWQKRM-------DAPQVPVPQGL 161 Query: 183 R-LTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIP--AI 239 R + P+ + P D A P G AL L F + Y P A Sbjct: 162 RDASKPLAAGDFPTLRDLRLPAARPTPAAGTAAALSTLHSFLDTRGAQYRRDLSSPLTAE 221 Query: 240 QGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAF-------SWLNELIWREFYR 292 +G S+LS +L+ G LS RQ ++ L + A + L W + Sbjct: 222 RGCSRLSAHLAFGTLSMRQVHQATEQRIRALQASGEPSARNMAYHLRGFAGRLRWHCHFM 281 Query: 293 HLMAFYPSVCMGKPFIPWTEKI-EWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHN 351 + P + F ++ + E + +AW G TGFP++DA MR LN GW++ Sbjct: 282 QKLEDEPGIEFHN-FARASDGLREPEFNPAYFEAWCSGNTGFPMVDACMRCLNATGWINF 340 Query: 352 RLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGW-QWAASTGNDSVPYFRIFN 410 R+R + SF L + WR + Q LD + + W Q +G + R+++ Sbjct: 341 RMRAMLVSFAAYHLWLHWREPGLHLARQFLDFEPGIH---WSQMQMQSGTTGINTLRVYS 397 Query: 411 PTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHT 470 P Q DPQG FIR W+PE + YP PIV+ + A Sbjct: 398 PAKQQADHDPQGEFIRQWVPEWG-------------------TSAYPPPIVNERSAVKQA 438 Query: 471 LNQYYAAKK 479 ++ YA ++ Sbjct: 439 KDRIYAIRQ 447 >gi|47223395|emb|CAG04256.1| unnamed protein product [Tetraodon nigroviridis] Length = 136 Score = 98.6 bits (244), Expect = 2e-18, Method: Composition-based stats. Identities = 50/98 (51%), Positives = 62/98 (63%), Gaps = 1/98 (1%) Query: 322 LLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLL 381 L AWK+G TG P +DA MR+L T G+M NR R ASFL KDL +DWR+G E+F S L+ Sbjct: 3 LFDAWKEGKTGVPFVDANMRELATTGFMSNRGRQNVASFLTKDLGLDWRMGAEWFESLLV 62 Query: 382 DGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFD 419 D D+ SN G W ++A GND R FN QG +D Sbjct: 63 DHDVCSNYGNWLYSAGIGNDPREN-RKFNMIKQGLDYD 99 >gi|31322270|gb|AAP22941.1| cryptochrome 2 [Arvicanthis ansorgei] Length = 139 Score = 98.2 bits (243), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 50/128 (39%), Positives = 69/128 (53%), Gaps = 2/128 (1%) Query: 313 KIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK-DLLVDWRI 371 +I W+++ L W +G TGFP IDA M QL GW+H+ R A FL + DL V W Sbjct: 13 QIPWDRNPEALAKWAEGKTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWVSWES 72 Query: 372 GEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPE 431 G F LLD D + N G W W + + +F + P G+R DP G +IR +LP+ Sbjct: 73 GVRVFDELLLDADFSVNAGSWMWLSCSAFFQ-QFFHCYCPVGFGRRTDPSGDYIRRYLPK 131 Query: 432 LNNVPTQY 439 L P++Y Sbjct: 132 LKGFPSRY 139 >gi|330920090|ref|XP_003298886.1| hypothetical protein PTT_09721 [Pyrenophora teres f. teres 0-1] gi|311327731|gb|EFQ93028.1| hypothetical protein PTT_09721 [Pyrenophora teres f. teres 0-1] Length = 678 Score = 98.2 bits (243), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 59/178 (33%), Positives = 87/178 (48%), Gaps = 19/178 (10%) Query: 284 ELIWREFYR--------HLMAFY---PSVCMGKPFIPWTEKIEWNKDSH-------LLQA 325 EL+WR++ R + A Y G W + + +D + + Sbjct: 382 ELLWRDYMRLCMRKFGHKMFALYGIQDRGAKGSQHKKWKKLHKSGEDGENPQKTMEIFER 441 Query: 326 WKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDL 385 ++ G TG +IDA+ R+L G+ NR R ASFL L +DWRIG E++ L+D D Sbjct: 442 FRSGRTGVGLIDASNRELFVTGYTSNRARQNVASFLSSHLNIDWRIGAEWYECFLVDYDA 501 Query: 386 ASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAP 443 ASN G WQ+ A GND R+FNP Q +D +G +I+ W+PEL ++ P Sbjct: 502 ASNWGNWQYVAGVGNDPR-QGRVFNPVKQALDYDKRGEYIKAWVPELRDIKLTRTVGP 558 >gi|332557413|ref|ZP_08411735.1| deoxyribodipyrimidine photo-lyase [Rhodobacter sphaeroides WS8N] gi|332275125|gb|EGJ20440.1| deoxyribodipyrimidine photo-lyase [Rhodobacter sphaeroides WS8N] Length = 454 Score = 97.8 bits (242), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 121/489 (24%), Positives = 182/489 (37%), Gaps = 85/489 (17%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 L+W RNDLR+ D+ AL A +D +V+ + I P +W S RQ F L ++ Sbjct: 4 LIWFRNDLRVADHPALARA---ADDRVLPLAIVDPAEWADPARSGRQWAFRAECLADLRA 60 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130 L+ G + L C R+ R Sbjct: 61 DLAALGAPLAV----RVGEPQAVLSKLCRLHRIG-------------------------R 91 Query: 131 VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTP 190 ++C DD P + L+ ALQ + T ++ A P+PA+ GP+ P Sbjct: 92 ILC--LDD----PAFAELDLALQAWAGGTGLDFIRLKPGAGAPAALTPLPAVE-PGPIPP 144 Query: 191 SNIPRFFD--YPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRD--IPAIQGTSQLS 246 + R + P + P G +L+ F + + Y + R+ + A + +S+LS Sbjct: 145 ARALRLAEDRCPHRQ-----PGGRPQGQLLLQSFLERRGALYRDGRNRLLQAERASSRLS 199 Query: 247 PYLSIGVLS---------------PRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFY 291 P+L+ G LS P W R F L +GA + E Sbjct: 200 PHLATGTLSREEVLAAVAARLAERPDADWVRSLGAFRAALASGATGARGAVCPPAAPEGA 259 Query: 292 RHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHN 351 + + GKP + L A G TG P +DAA+R + GW+ Sbjct: 260 APPEDIW-TRLKGKP----------DALRLRLAALHAGETGLPFVDAALRAMAASGWLPA 308 Query: 352 RLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNP 411 RLR + AS + L + + + L D ++ WA V R +P Sbjct: 309 RLRGMLASVALHHLGLSEQAAGAALAAGLTD-----HSPPIHWAQMR---RVALGRPVDP 360 Query: 412 TIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLD-KNDLSLNYPLPIVD--HKKACH 468 DP G F R WLPEL VP + + AP W + L YP P+VD +A Sbjct: 361 ERLAGVLDPDGAFTRRWLPELAEVPDRVLQAPWRWEGARGLLGRRYPEPLVDPSAARAAG 420 Query: 469 HTLNQYYAA 477 TL + A Sbjct: 421 RTLARRPTA 429 >gi|149210621|ref|XP_001522685.1| hypothetical protein MGCH7_ch7g783 [Magnaporthe oryzae 70-15] gi|86196738|gb|EAQ71376.1| hypothetical protein MGCH7_ch7g783 [Magnaporthe oryzae 70-15] Length = 793 Score = 97.8 bits (242), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 53/125 (42%), Positives = 71/125 (56%), Gaps = 5/125 (4%) Query: 308 IPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLV 367 IP EKI+ D L G TG +IDA+MR+L G+ NR R A+FL K L + Sbjct: 417 IPEPEKIKVCLDRFLA-----GTTGLGLIDASMRELMHTGYTSNRARQNAANFLAKHLGI 471 Query: 368 DWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRH 427 DWR G E++ L+D D+ SN WQ+ A GND RIFNP Q +D +G +++ Sbjct: 472 DWRWGAEWYEMLLVDYDVCSNWANWQYVAGVGNDPRGEARIFNPVKQAFDYDKEGAYVKM 531 Query: 428 WLPEL 432 W+PEL Sbjct: 532 WVPEL 536 >gi|289622017|emb|CBI51195.1| putative cryptochrome [Sordaria macrospora] Length = 530 Score = 97.8 bits (242), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 69/225 (30%), Positives = 103/225 (45%), Gaps = 34/225 (15%) Query: 242 TSQLSPYLSIGVLSPRQCWNRLK--EEFVDLLIKPKSGAFSWLN--------ELIWREFY 291 +++LS YL+ G ++ RQ + L E+ D + G N EL+WR++ Sbjct: 82 STKLSAYLAQGCVTARQIHHALVAYEDGSDTRYQGADGFGEGDNQGTETVRIELLWRDYM 141 Query: 292 RHLMAFYPSVCM------GK--PFIPWTEKIEW----------------NKDSHLLQAWK 327 R Y GK + +K W K + +L + Sbjct: 142 RLCHQKYGDKLFRIEGFNGKHTDYEGEDKKHGWKTANTSIALPGQDPTPEKVADILARFN 201 Query: 328 QGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLAS 387 G TG +IDA+ R+L G+ NR R ASFL K + +DWR G E++ L+D D++S Sbjct: 202 AGTTGMGLIDASQRELLHTGYTSNRARQNVASFLAKHMEIDWRYGAEWYEMLLVDYDVSS 261 Query: 388 NNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPEL 432 N WQ+ A GND RIFNP Q +D G ++R W+PE+ Sbjct: 262 NWANWQYVAGVGNDPRGAARIFNPVKQAFDYDKDGVYVRAWVPEV 306 >gi|39971071|ref|XP_366926.1| hypothetical protein MGG_03002 [Magnaporthe oryzae 70-15] gi|145017156|gb|EDK01519.1| hypothetical protein MGG_03002 [Magnaporthe oryzae 70-15] Length = 770 Score = 97.8 bits (242), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 53/125 (42%), Positives = 71/125 (56%), Gaps = 5/125 (4%) Query: 308 IPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLV 367 IP EKI+ D L G TG +IDA+MR+L G+ NR R A+FL K L + Sbjct: 417 IPEPEKIKVCLDRFLA-----GTTGLGLIDASMRELMHTGYTSNRARQNAANFLAKHLGI 471 Query: 368 DWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRH 427 DWR G E++ L+D D+ SN WQ+ A GND RIFNP Q +D +G +++ Sbjct: 472 DWRWGAEWYEMLLVDYDVCSNWANWQYVAGVGNDPRGEARIFNPVKQAFDYDKEGAYVKM 531 Query: 428 WLPEL 432 W+PEL Sbjct: 532 WVPEL 536 >gi|156752078|gb|ABU93791.1| cryptochrome 2 [Carassius auratus] Length = 164 Score = 97.4 bits (241), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 58/158 (36%), Positives = 76/158 (48%), Gaps = 7/158 (4%) Query: 283 NELIWREFYRHLMAFYPSV--CMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAM 340 +L+WREF+ P G P +I W+K+ L W + TGFP IDA M Sbjct: 11 GQLLWREFFYTAATTNPRFDKMEGNPIC---VRIPWDKNPEALAKWAEAKTGFPWIDAIM 67 Query: 341 RQLNTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTG 399 QL GW+H+ R A FL + DL + W G + F LLD D + N G W W S Sbjct: 68 TQLRQEGWIHHLARHAVACFLTRGDLWISWEEGMKVFEELLLDADWSVNAGSWMW-LSCS 126 Query: 400 NDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPT 437 + +F + P G+R DP G FIR +LP L P Sbjct: 127 SFFQQFFHCYCPVGFGRRTDPNGDFIRRYLPILRGFPA 164 >gi|80971694|gb|ABB52817.1| cryptochrome 1 [Sesamia nonagrioides] Length = 247 Score = 97.1 bits (240), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 72/220 (32%), Positives = 104/220 (47%), Gaps = 27/220 (12%) Query: 192 NIPRFFDYPF--QAIDPM-FPIGEQNALHILRKFC--KEKVYYYVEQRDIPAI--QGTSQ 244 +IP + F ++P+ +P GE L L + +E V + + P T+ Sbjct: 39 DIPSLDELEFDESGLNPLKYPGGETEGLRRLNMYMARREWVCKFEKPNSSPNSLEPSTTV 98 Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYP----- 299 LSPY+S G LS + +++LKE + + S L +L+WREFY A Sbjct: 99 LSPYISHGCLSAKLFYHKLKEVLNSM--RHTEPPVSLLGQLMWREFYYTAGAGTENFDKM 156 Query: 300 ---SVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMI 356 SVC +I W K+ L AW +G TG+P +DA MRQL GW+H+ R + Sbjct: 157 VGNSVCT---------QIPWGKNEEHLIAWAEGRTGYPFVDAIMRQLKQEGWIHHLARHM 207 Query: 357 TASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWA 395 A FL + DL + W G + F LLD D + N G W W Sbjct: 208 VACFLTRGDLWISWEQGAKVFEDYLLDYDWSLNAGNWMWV 247 >gi|329909778|ref|ZP_08275122.1| Deoxyribodipyrimidine photolyase [Oxalobacteraceae bacterium IMCC9480] gi|327546398|gb|EGF31408.1| Deoxyribodipyrimidine photolyase [Oxalobacteraceae bacterium IMCC9480] Length = 439 Score = 97.1 bits (240), Expect = 6e-18, Method: Compositional matrix adjust. Identities = 67/204 (32%), Positives = 101/204 (49%), Gaps = 26/204 (12%) Query: 199 YPFQAIDPMFPIGEQNALHILRKFCKEKV-YYYVEQRD-IPAIQGTSQLSPYLSIGVLSP 256 +P+Q+ + G L L ++ + K+ + Y + R+ + + +S+ SP+L+ G LS Sbjct: 203 FPYQSA--VCAGGTSAGLAHLHQYLERKLAHTYKDTRNGLMGLDYSSKFSPWLATGALSA 260 Query: 257 RQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFY----------PSVCMGKP 306 R N E+F D S + W EL+WR+++R L Y M +P Sbjct: 261 RTI-NAAIEQFEDDFGANDSTYWLWF-ELLWRDYFRFLHLKYGRKLYRHYGLADAGMARP 318 Query: 307 FIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLL 366 D+ W G TG PI+DA MR+L T G++ NRLR I AS+L+ DL Sbjct: 319 V----------HDAAQFARWSHGLTGEPIVDAGMRELATTGYLSNRLRQIVASYLIHDLG 368 Query: 367 VDWRIGEEYFMSQLLDGDLASNNG 390 DWR G +F SQL+D D+ S G Sbjct: 369 GDWRAGAAWFESQLVDYDVYSQPG 392 >gi|146279110|ref|YP_001169269.1| deoxyribodipyrimidine photo-lyase [Rhodobacter sphaeroides ATCC 17025] gi|145557351|gb|ABP71964.1| Deoxyribodipyrimidine photo-lyase type I [Rhodobacter sphaeroides ATCC 17025] Length = 455 Score = 97.1 bits (240), Expect = 6e-18, Method: Compositional matrix adjust. Identities = 112/473 (23%), Positives = 172/473 (36%), Gaps = 80/473 (16%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 LVW RNDLR+TD+ AL +D + + I P +W S RQ F A LQ Sbjct: 4 LVWFRNDLRVTDHPALA----RADGHALPLVIVDPAEWADPARSGRQWAF-RAECLQ--- 55 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130 L + D + L++ C R+ ++ + L++R+Q Sbjct: 56 DLREALAALGAPLALRVGDPLTVLETLCRLHRIGRILCIEDLACHA------LDRRVQAW 109 Query: 131 VICKSFDDSVLLP-PGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189 + + L P PG+ P+P + GP+ Sbjct: 110 AAAAGVEFTALAPGPGAPATLT--------------------------PLPGVE-PGPIP 142 Query: 190 PSNIPRFFD--YPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIP--AIQGTSQL 245 P+ + R + P + P G +L+ F + + +Y + RD P A + S+L Sbjct: 143 PARVLRIAEDRCPHRQ-----PGGRMQGRLLLQSFLERRGEHYRDGRDRPLGAERICSRL 197 Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNEL-IWREFYRHLMAFYPSVCMG 304 SP+L+ G L+ + + + W L +R +VC Sbjct: 198 SPHLATGTLARVEVREAVTARM-------EEAGPDWTRSLGAFRAALAQADVARGAVCPP 250 Query: 305 KP----------FIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLR 354 F + I +A + G TG P +DAA R L+ GW+ RLR Sbjct: 251 AAPEGAAPPEDIFARMKDGIASGAARR--EALRLGETGLPFVDAAARALSATGWLPARLR 308 Query: 355 MITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQ 414 + S + L + R + L D A + WA R +P Sbjct: 309 GLLVSAAMHHLRLCERTAGVVIAAGLTDHAPAVH-----WARVR---RAARARPVDPLGL 360 Query: 415 GKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND-LSLNYPLPIVDHKKA 466 DP+G F R WLPEL +VP ++ AP W L YP P+VD A Sbjct: 361 AAALDPEGAFTRRWLPELADVPDLFLQAPWRWEGARQLLGRRYPEPLVDPATA 413 >gi|227540558|ref|ZP_03970607.1| deoxyribodipyrimidine photolyase [Sphingobacterium spiritivorum ATCC 33300] gi|227239640|gb|EEI89655.1| deoxyribodipyrimidine photolyase [Sphingobacterium spiritivorum ATCC 33300] Length = 425 Score = 96.7 bits (239), Expect = 7e-18, Method: Compositional matrix adjust. Identities = 96/402 (23%), Positives = 171/402 (42%), Gaps = 26/402 (6%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYAS-LLQ 67 V L+W RNDLR DN+ L+ S +I V+ P + + R++ A +L Sbjct: 5 VTLIWFRNDLRFHDNEILFETVSKSPI-IIPVYCFDPRYFSKKSSGHRKTGVHRARFILD 63 Query: 68 VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127 + L +K S E + + V ++F++R+ E + +E L Sbjct: 64 AVRELKEKFAAMGCDLMSFVGYPEEIIPRLAAKYEVNEVFHHREVASRETIISENVETAL 123 Query: 128 -QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRS-LPVPAIRLT 185 + ++ K F L + + + F+K + + ++ +R P P + +T Sbjct: 124 WKLKINLKHFIGHTLYHKEDLPFPIRDIPNDFMVFKKKIER---ESTVRQPFPTPEVMVT 180 Query: 186 GP-VTPSNIPRFFDYPFQAIDPMFPIGEQNALHI-------LRKFCKEKVYYYVEQRDIP 237 P + + IP + + A + N +H+ L+K + + EQ D Sbjct: 181 HPHLEKTTIPTLEELGYTAEE--IQTANNNPIHLRGGEDEALKKVEEVLSGQFNEQLDY- 237 Query: 238 AIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAF 297 LSPY++ G LSP ++++K+ L+ K +L+WR+++R ++ Sbjct: 238 -----MMLSPYIAAGALSPIYLYHKIKDA---KLVLNKKRTEKLTAQLLWRDYFRFMLKK 289 Query: 298 YPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMIT 357 YP+V K E + + L+ W+ G TG ID AM+ L+ G + + L+ I Sbjct: 290 YPNVFFKKNGTGKNEYSNTDTNPEDLKKWQSGQTGHVFIDKAMQFLSQTGNLPSDLKKIV 349 Query: 358 ASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTG 399 + F V++ DWR G YF L+D A+ G W A G Sbjct: 350 SLFFVQEYQGDWRKGASYFEDILIDYAPATTYGYWAHYAGVG 391 >gi|213647828|ref|ZP_03377881.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp. enterica serovar Typhi str. J185] Length = 92 Score = 96.7 bits (239), Expect = 8e-18, Method: Compositional matrix adjust. Identities = 42/92 (45%), Positives = 65/92 (70%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M HLVW R DLR+ DN AL AAC ++ A+V+A++I+TP QW+ H ++ RQ+ FI A L Sbjct: 1 MPTHLVWFRRDLRLQDNLALAAACRDASARVLALYISTPAQWQAHDMAPRQAAFISAQLN 60 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYC 98 +Q +L++KGI +H+ ++F+ SIE + + C Sbjct: 61 ALQTALAEKGIPLLFHEVADFNASIETVKNVC 92 >gi|323499198|ref|ZP_08104176.1| deoxyribodipyrimidine photolyase [Vibrio sinaloensis DSM 21326] gi|323315831|gb|EGA68864.1| deoxyribodipyrimidine photolyase [Vibrio sinaloensis DSM 21326] Length = 488 Score = 96.3 bits (238), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 51/126 (40%), Positives = 73/126 (57%), Gaps = 4/126 (3%) Query: 319 DSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMS 378 D L AWKQG TG P+IDA MR L+ G+++ R+R + SFL + +DWR G + Sbjct: 302 DRDKLNAWKQGQTGIPLIDACMRCLHHTGYINFRMRAMLVSFLTHHMNMDWREGVTHLAQ 361 Query: 379 QLLDGDLASNNGGWQWAAS-TGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPT 437 LD + + +Q A TG +++ RI+NPT Q + D +G FI+ WLPEL +VPT Sbjct: 362 LFLDFEPGIHYPQFQMQAGVTGTNTI---RIYNPTKQAQEHDSEGVFIKQWLPELKHVPT 418 Query: 438 QYIHAP 443 + P Sbjct: 419 PLLFEP 424 >gi|47212596|emb|CAF93038.1| unnamed protein product [Tetraodon nigroviridis] Length = 662 Score = 95.9 bits (237), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 54/182 (29%), Positives = 88/182 (48%), Gaps = 29/182 (15%) Query: 313 KIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK-DLLVDWRI 371 +I W+++ L W +G TGFP IDA M QL GW+H++ R +A FL + DL + W Sbjct: 452 QIPWDQNPEALAKWAEGRTGFPWIDAIMTQLRQEGWIHHQARRASACFLTRGDLWISWEC 511 Query: 372 G---------------------EEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFN 410 G + F LLD D + N G W W + + +F+ + Sbjct: 512 GMKVGGPPWSRRRRRRLSARLLPQVFEELLLDADWSVNAGSWMWLSCSAFFQQ-FFKCYC 570 Query: 411 PTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND------LSLNYPLPIVDHK 464 P G+R DP G +IR ++P L + P +YI+ P + + + ++YP P+++H Sbjct: 571 PVGFGRRTDPSGDYIRRYIPILKDYPNRYIYEPWNAPEAVQKAANCVVGVDYPRPMINHA 630 Query: 465 KA 466 + Sbjct: 631 EG 632 >gi|213422521|ref|ZP_03355587.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp. enterica serovar Typhi str. E01-6750] Length = 102 Score = 95.9 bits (237), Expect = 1e-17, Method: Composition-based stats. Identities = 46/103 (44%), Positives = 69/103 (66%), Gaps = 1/103 (0%) Query: 53 ISARQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQY 112 ++ RQ+ FI A L +Q +L++KGI +H+ ++F+ SIE + + C Q V+ LFYN QY Sbjct: 1 MAPRQAAFISAQLNALQTALAEKGIPLLFHEVADFNASIETVKNVCRQHDVSHLFYNYQY 60 Query: 113 EINEVRRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMY 155 E NE +RD +EK L VIC+ FDDSV+L PG+++ +MY Sbjct: 61 EFNERQRDAAVEKTLP-SVICEGFDDSVILAPGAVMTGNHEMY 102 >gi|313234987|emb|CBY24933.1| unnamed protein product [Oikopleura dioica] Length = 374 Score = 95.5 bits (236), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 102/404 (25%), Positives = 168/404 (41%), Gaps = 60/404 (14%) Query: 5 TAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPE-QWRQHGISARQSHFIYA 63 T +VH W R LR+ DN+ALY A S V ++I + Q + SA ++ F+ Sbjct: 4 THRTVH--WFRKGLRLHDNEALYHAVTTSQV-VFPIYILDVDWQTEKEKFSALKTRFLIE 60 Query: 64 SLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLL 123 L + + L + G D+ + +C + +T++ + + EI RD+ + Sbjct: 61 CLRDLDEGLKKCGTRLYVLT----GDATTVIKKFCKENEITQMTWMKDAEIFYRERDEEI 116 Query: 124 EKRLQHR--VICKSF-------DDSVLLPPGSILNHALQ--------MYKVYTPFRKALI 166 K + HR + KSF D V+ G + L M + P + I Sbjct: 117 TK-VVHRMEIKTKSFLGHTLYDQDEVIAKNGGKIPMDLSEFYAAIADMEQPGAPCPTSCI 175 Query: 167 QNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEK 226 V + +P I + G P ++P ++ GE+ AL L+ + Sbjct: 176 APAVDNHESTYGIPKISVWGHQAPRSLP------------IYRGGERQALKALQAKINDP 223 Query: 227 VYYYVE---QRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLN 283 + + Q + T+ LS Y + G +S R W ++ P+S Sbjct: 224 TLFTLNGFNQGVKTKLPHTTYLSAYQNYGCISTRHFWKAAEK-------LPESKTIMLRG 276 Query: 284 ELIWREFYRHLMAFYPSVCMGKPFIPWT-----EKIEWNKDSHLLQAWKQGYTGFPIIDA 338 ++++REF FY + F +IEW K+ L AW++G TG+P IDA Sbjct: 277 QIMYREF------FYVAASQVNNFTKMAGNRICRQIEWYKNEEHLSAWQEGRTGYPYIDA 330 Query: 339 AMRQLNTIGWMHNRLRMITASFLVKDLL-VDWRIGEEYFMSQLL 381 MRQL T G++H+ R ASFL L ++W G+E L+ Sbjct: 331 VMRQLVTEGFIHHLNRWAVASFLTNGQLWLNWEHGQESMFYDLI 374 >gi|302918988|ref|XP_003052768.1| hypothetical protein NECHADRAFT_22205 [Nectria haematococca mpVI 77-13-4] gi|256733708|gb|EEU47055.1| hypothetical protein NECHADRAFT_22205 [Nectria haematococca mpVI 77-13-4] Length = 640 Score = 95.5 bits (236), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 85/312 (27%), Positives = 130/312 (41%), Gaps = 50/312 (16%) Query: 152 LQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIG 211 Q+ Y F + L+Q P+ + PV P + +PF G Sbjct: 217 FQVPDTYEEFERRLLQ----------PIDYMLANPPVLPQDAKSA--HPFDG-------G 257 Query: 212 EQNALHILRKFCKEK-VYYYVEQRD-IPAIQGTSQLSPYLSIGVLSPRQCWNRLK--EEF 267 E A LR + + Y E R+ + +++LS YL++G +S R L E+ Sbjct: 258 ESFAWERLRHLIRTGGMCTYQETRNGLLGKDYSTKLSGYLALGCISARSIHEELLKLEDG 317 Query: 268 VDLLIKPKSGAFSWLNE--------LIWREFYRHLMAFYPS---------VCMGKPFIPW 310 D G NE L+WR++ R + + G+ W Sbjct: 318 TDQAYARARGFDRGENEGTKAVRFELLWRDYMRLCTKKFGAQLFRVSGFKGATGQYEKKW 377 Query: 311 ------TEKIEWNKDSH----LLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASF 360 T I+ + ++ + +G TG IDA+ R+L G+ NR R ASF Sbjct: 378 KTADKKTAAIDQDPSPEEVGTIIDRFLEGTTGMGFIDASQRELYHTGYTSNRARQNVASF 437 Query: 361 LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDP 420 K L +DWR G E++ L+D D++SN WQ+ A GND RIFNP Q +D Sbjct: 438 FSKHLGIDWRYGAEWYEMMLVDYDVSSNWANWQYVAGVGNDPRGDARIFNPVKQAFDYDN 497 Query: 421 QGTFIRHWLPEL 432 G ++R W+PE+ Sbjct: 498 NGAYVRTWVPEV 509 >gi|318041064|ref|ZP_07973020.1| DNA photolyase, FAD-binding protein [Synechococcus sp. CB0101] Length = 314 Score = 95.1 bits (235), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 57/156 (36%), Positives = 84/156 (53%), Gaps = 16/156 (10%) Query: 318 KDSHLLQAWKQGYTGFPIIDAAMRQLNT-IGWM--HNRLRMITASFLVKDLLVDWRIGEE 374 + L AW++G TGFPI+DAA R L GW+ + R R I ASFL +DWR G Sbjct: 41 QQEELYAAWREGRTGFPIVDAAARCLQAEGGWLELNFRSRAIYASFLSNLCGIDWRFGAL 100 Query: 375 YFMSQLLDGDLASNNGGWQWAASTG---NDSVPYFRIFNPT-IQGKRFDPQGTFIRHWLP 430 ++M L+DGD ++ +QWA G + + + RI++P + R DP G FIR WLP Sbjct: 101 HYMRHLIDGDCPIDH--YQWAMQAGVTYHGTKAWTRIYHPGQVAVDRCDPHGLFIRRWLP 158 Query: 431 ELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKA 466 EL + + P + D YP P++D++ + Sbjct: 159 ELRGLTNDQLGTPPAMAD-------YPAPVLDYETS 187 >gi|253995627|ref|YP_003047691.1| DNA photolyase FAD-binding [Methylotenera mobilis JLW8] gi|253982306|gb|ACT47164.1| DNA photolyase FAD-binding [Methylotenera mobilis JLW8] Length = 407 Score = 95.1 bits (235), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 69/190 (36%), Positives = 96/190 (50%), Gaps = 16/190 (8%) Query: 219 LRKFCKEKVYYYVEQRDIPAIQGT-SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSG 277 LRK Y R+ I G + LSPYL G L+ + ++ +K++F Sbjct: 44 LRKLHAVDAVQYGRNRNF--INGAVTHLSPYLRHGCLNLNEVFSFVKQKF-------GLQ 94 Query: 278 AFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQ-AWKQGYTGFPII 336 S L EL WR+F+R + FY G E+ + N D L + KQ TG P + Sbjct: 95 GESLLMELAWRDFWRQVW-FYE----GNAIFSEMEQPKVNLDYQPLSVSVKQANTGLPCM 149 Query: 337 DAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAA 396 D +++L G+MHN RM AS++V L VDWR ++F + LLDGD ASN+ WQW A Sbjct: 150 DGFIKELLDTGYMHNHARMWFASYVVHHLKVDWREAADWFEAHLLDGDFASNHLSWQWIA 209 Query: 397 STGNDSVPYF 406 ST + YF Sbjct: 210 STFSSKPYYF 219 >gi|326404724|ref|YP_004284806.1| deoxyribodipyrimidine photo-lyase [Acidiphilium multivorum AIU301] gi|325051586|dbj|BAJ81924.1| deoxyribodipyrimidine photo-lyase [Acidiphilium multivorum AIU301] Length = 539 Score = 94.7 bits (234), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 79/265 (29%), Positives = 113/265 (42%), Gaps = 17/265 (6%) Query: 211 GEQNALHILRKFCKEKVYYYVEQRDIP--AIQGTSQLSPYLSIGVLSPRQC----WNRLK 264 G AL L F + Y P S+LSPYL+ G +S R+ W R + Sbjct: 197 GRAAALETLGSFLASRGEDYTRAMSSPVSGEAACSRLSPYLAYGCVSIREAAQAAWRRQR 256 Query: 265 EEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQ 324 E V + + S++ L W + + P +PF E + D L Sbjct: 257 E--VPAASRWGAALRSFIARLHWHCHFIQKLEAEPEAEW-RPFARIYEGMRPPADPARLA 313 Query: 325 AWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGD 384 AW +G TG+P IDAAMR L GW++ R+R + SF DL + W+ E + L D Sbjct: 314 AWAEGRTGYPFIDAAMRYLAAHGWINFRMRAMLMSFASHDLFLPWQ--ESGLVLARLFTD 371 Query: 385 LASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPH 444 Q +G + R+++P QG DP G FIR +PEL V +H P Sbjct: 372 YEPGIHWPQCQMQSGETGINTVRVYSPVKQGFDQDPAGRFIRLHVPELAAVAGALVHEP- 430 Query: 445 SW----LDKNDLSLNYPLPIVDHKK 465 W ++ L YP IV H++ Sbjct: 431 -WRLDAAERARLCPEYPARIVIHEE 454 >gi|255038083|ref|YP_003088704.1| Deoxyribodipyrimidine photo-lyase [Dyadobacter fermentans DSM 18053] gi|254950839|gb|ACT95539.1| Deoxyribodipyrimidine photo-lyase [Dyadobacter fermentans DSM 18053] Length = 396 Score = 94.4 bits (233), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 109/428 (25%), Positives = 184/428 (42%), Gaps = 74/428 (17%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQS-----HFIYASL 65 + W RNDLR+ DN+AL AA ++D ++I V++ P Q+ + + R++ F+ S+ Sbjct: 6 IYWFRNDLRLKDNQALSAAVGSAD-EIIPVYVFDPRQFEKTKLGFRRTGALRARFLIESV 64 Query: 66 LQVQKSLSQKG------------IVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYE 113 ++++++ QKG IV Q + N D ++ +++ Sbjct: 65 AELRENIRQKGGDLIIRTGAPEAIVAQLAEDYNAD----------------YVYTSKEIA 108 Query: 114 INEVRRDKLLEKRLQ-HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQA 172 E R + L K L+ V K F ++ + ++ + F + L +L Sbjct: 109 PQETRIESSLSKNLKTANVDIKLFWMDTMINATDLPFPVSKLPSGFAEFERLLSNDLKIK 168 Query: 173 DLRSLPVPA-IRLTGPVTPSNIPRFFDYPFQAIDP-------MFPI--GEQNALHILRKF 222 D P PA I L V IP P IDP P+ GE AL +L+++ Sbjct: 169 D--QFPTPASITLPADVEAGAIPGL---PELGIDPNEIPAGTTGPLAGGEARALAVLKEY 223 Query: 223 CKEKVYYYVEQRDI--PAIQ--GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGA 278 +E V ++DI P+ + ++LS +LS+G +S + +K +++ Sbjct: 224 VEEYV-----KKDIAYPSAEPLTDTRLSDWLSLGCVSASYIYRSVKTAQSHAVVEDPI-- 276 Query: 279 FSWLNELIWREFYR-HLMAFYPSVCMGKPFIPWTEK----IEWNKDSHLLQAWKQGYTGF 333 + L+ REF L+ F P + F P K W D+ + W G TG Sbjct: 277 ---ITNLLRREFLHWTLLRFGPRM-----FKPSGVKHHFNRRWKNDNAAFEKWINGQTGD 328 Query: 334 PIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQ 393 I+ +R+L G++ R A +LV DL ++W G YF S L+D + + N G W Sbjct: 329 QSINDIIRRLTATGFITAAERESAARYLVDDLDINWTWGAMYFESLLMDYEASVNWGRWN 388 Query: 394 WAASTGND 401 A G D Sbjct: 389 HIAGVGED 396 >gi|193795850|gb|ACF21978.1| CPD1 [Cercospora zeae-maydis] Length = 72 Score = 93.6 bits (231), Expect = 6e-17, Method: Composition-based stats. Identities = 40/72 (55%), Positives = 49/72 (68%) Query: 284 ELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQL 343 E+ WREFY+H++A +P VCM KPF +EW D L + W G TGFPI+DAAMRQ Sbjct: 1 EVAWREFYKHVLAHWPYVCMSKPFKYEYSDVEWEYDDALFEKWTSGLTGFPIVDAAMRQC 60 Query: 344 NTIGWMHNRLRM 355 + WMHNRLRM Sbjct: 61 KEMSWMHNRLRM 72 >gi|115727477|ref|XP_783613.2| PREDICTED: similar to cryptochrome dash [Strongylocentrotus purpuratus] gi|115935378|ref|XP_001186661.1| PREDICTED: similar to cryptochrome dash [Strongylocentrotus purpuratus] Length = 463 Score = 92.8 bits (229), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 73/251 (29%), Positives = 118/251 (47%), Gaps = 30/251 (11%) Query: 148 LNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDY----PFQA 203 H ++ VYT FRK + ++P P L V +IP F + P Sbjct: 197 FRHLAEVPNVYTEFRKKVENRSHVRPPINMPKPLKGLPQGVEEGDIPVFSSFGLKDPGSD 256 Query: 204 IDPMFPI--GEQNALHILRKFC--KEKVYYYVEQRD-IPAIQGTSQLSPYLSIGVLSPRQ 258 FP GE L + + + + Y E R+ + + +++ + +L+ G +SPRQ Sbjct: 257 SRTAFPFQGGETTGLARIEDYFWKSDCIAKYKETRNGLIGSEYSTKFAAWLAHGCVSPRQ 316 Query: 259 CWNRLKEEFVDLLIKPKSGAFSW-LNELIWREFYRHLM------AFYPSVCMG--KPFIP 309 +K + + ++ + W + ELIWR++++ + FY S +G KP Sbjct: 317 IHAEVKRYEKE---RTENQSTYWVIFELIWRDYFKFVALKFGDKMFYLSGLLGVHKP--- 370 Query: 310 WTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDW 369 WNK+ AW +G TG P +DA +R++ G+M NR R ASFL KDL++DW Sbjct: 371 ------WNKNKQWFDAWCKGQTGVPFVDANIREMAATGFMSNRGRQNVASFLTKDLVLDW 424 Query: 370 RIGEEYFMSQL 380 R+G E+F L Sbjct: 425 RLGAEWFEQML 435 >gi|156361145|ref|XP_001625380.1| predicted protein [Nematostella vectensis] gi|156212211|gb|EDO33280.1| predicted protein [Nematostella vectensis] Length = 463 Score = 92.4 bits (228), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 69/196 (35%), Positives = 91/196 (46%), Gaps = 19/196 (9%) Query: 211 GEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS------QLSPYLSIGVLSPRQCWNRLK 264 GE AL L + + K + + P + S +SPYL G LSPR + RL Sbjct: 231 GETEALKRLDRHLERKAW--IASFGKPKVTSDSLMASPSGVSPYLRFGCLSPRLFYYRL- 287 Query: 265 EEFVDLLIKPKSGA--FSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHL 322 +DL K K G S +L+WREF+ + P+ + P I+W D + Sbjct: 288 ---MDLYRKVKGGPPPTSLYGQLLWREFFFVVSTNNPNFDKMES-NPICLYIKWRTDKQV 343 Query: 323 ---LQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLL-VDWRIGEEYFMS 378 LQ W TGFP IDA M QL GW+H R+ ASFL + L + W G + F Sbjct: 344 ASDLQKWTDAQTGFPWIDAIMSQLKQEGWIHYLARVAVASFLTRGCLWISWEAGMKVFAE 403 Query: 379 QLLDGDLASNNGGWQW 394 LLD D +SN G W W Sbjct: 404 HLLDADWSSNAGNWMW 419 >gi|126735513|ref|ZP_01751258.1| putative deoxyribodipyrimidine photolyase [Roseobacter sp. CCS2] gi|126714700|gb|EBA11566.1| putative deoxyribodipyrimidine photolyase [Roseobacter sp. CCS2] Length = 505 Score = 92.4 bits (228), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 77/287 (26%), Positives = 124/287 (43%), Gaps = 28/287 (9%) Query: 211 GEQNALHILRKFCKEKVYYYVEQRDIPAIQGT--SQLSPYLSIGVLSPRQCWNRL--KEE 266 G A L F ++ Y + P T S+LSP+L G +S R+ + ++ Sbjct: 199 GLAAARATLDSFLHDRGAPYQKAMSSPVSGETACSRLSPHLMAGSISMREVYQATLARQS 258 Query: 267 FVDLLIKPKSGAF-----SWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNK--- 318 V L K G + S++ L W + + P + ++P E + Sbjct: 259 AVAALPKADRGTWPSAMKSFVGRLHWHCHFMQKLEAEPEI----EWLPMARIYEGLRPTP 314 Query: 319 -DSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFM 377 DS LL A+++G TG+P +DA MR L GW++ R+R + SF +L + W+ Sbjct: 315 TDSSLLSAFEEGRTGYPFVDACMRYLRATGWINFRMRAMLMSFASYNLWLPWQQSGTVLA 374 Query: 378 SQLLDGDLASNNGGWQWAAS---TGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNN 434 D G W S +G + RI++P QG DP G F R W+PEL + Sbjct: 375 RLFTD-----YEPGIHWPQSQMQSGETGINAVRIYSPVKQGYDQDPTGVFTRQWVPELAH 429 Query: 435 VPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481 + + + P + LD L YP IVDH++ + Y ++ + Sbjct: 430 LTGKALQDPWT-LDA--LPKGYPARIVDHQQTAREAKQRIYGLRRTA 473 >gi|255027720|ref|ZP_05299706.1| hypothetical protein LmonocytFSL_17612 [Listeria monocytogenes FSL J2-003] Length = 282 Score = 92.0 bits (227), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 78/300 (26%), Positives = 131/300 (43%), Gaps = 36/300 (12%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 ++W R DLR++DNKALY AC D ++ +F P Q+ G + Q+ F AS+ ++ Sbjct: 4 VMWFRRDLRVSDNKALYHACKEDD--LLLLFQVNPAQFNT-GSPSHQAFF--ASVAHFKQ 58 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVT------KLFYNRQYEINEVRRDKLLE 124 + + ++ F + +E CL+Q K+++NR RD+ + Sbjct: 59 EVDKTALL-----QIMFGEPVE-----CLKQLKETLPSWDKVYFNRDETGYGAERDEAAK 108 Query: 125 KRLQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIR 183 + I ++F DS L + + YK++TP+ K + +++ P Sbjct: 109 TFFDEQEIEVQAFHDSYLHSAEEVKKSPTEYYKIFTPYYKKW-----REEIKETPFKVTL 163 Query: 184 LTGPVTPSNIPRFFDYPFQAIDPMFPI---GEQNALHILRKFCKEKVYYYVEQRDIPAIQ 240 + N+ ++ F + PI GE+ A L F K V Y + RD P + Sbjct: 164 KADNIRKENLFPKYEEQFAEMTCDLPILDSGEKTANTRLANFIKHDVADYDKARDFPELD 223 Query: 241 GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPS 300 TS LS YL G +S R W L+E + G + EL WR+FY + +P+ Sbjct: 224 KTSHLSRYLRTGEISVRTIWQALQEN------EATEGRAIFEKELCWRDFYNMIYVSFPN 277 >gi|302417194|ref|XP_003006428.1| cryptochrome-1 [Verticillium albo-atrum VaMs.102] gi|261354030|gb|EEY16458.1| cryptochrome-1 [Verticillium albo-atrum VaMs.102] Length = 626 Score = 91.7 bits (226), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 81/271 (29%), Positives = 120/271 (44%), Gaps = 32/271 (11%) Query: 184 LTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVY--YYVEQRDIPAI-- 239 + GP I + F + GE AL L++ K+ Y + + + PA Sbjct: 215 IAGPNGDFGIETMEELGFPSATTPHRGGESRALETLKEVMKDVKYAATFRKPQTSPAAFE 274 Query: 240 -QGTSQLSPYLSIGVLSPRQC-WNRLKEEFVDLLIKPKSGA-FSWLNELIWREFY---RH 293 Q T+ LSP++ G LS R+ W + + V K SG S +L++R+ Y + Sbjct: 275 PQSTTLLSPHMHFGSLSVREFYWQAV--DAVKAFGKGASGPPESLTGQLLFRDMYFAAQA 332 Query: 294 LMAFYPSVCMGKP---FIPWTEKIEWNKDSHLLQA---------------WKQGYTGFPI 335 + + G FIPW + N ++ L+ WK G TGFP Sbjct: 333 ALGYKFEQTRGNAYCRFIPWHLPSKVNTETGLITGQYHVDSEEADLWFRRWKAGQTGFPW 392 Query: 336 IDAAMRQLNTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQW 394 IDA MRQL GW+H+ R A FL + +DW G E F L+D + A N G WQW Sbjct: 393 IDALMRQLAEEGWIHHLGRHSVACFLTRGGCYIDWERGCEVFEEWLIDHEPACNAGNWQW 452 Query: 395 AASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425 + S YFR ++P G+++D +G I Sbjct: 453 LSCAAFFSQ-YFRCYSPVSFGQKWDKEGLLI 482 >gi|75907163|ref|YP_321459.1| deoxyribodipyrimidine photo-lyase family protein [Anabaena variabilis ATCC 29413] gi|75700888|gb|ABA20564.1| deoxyribodipyrimidine photo-lyase family protein (cryptochrome) [Anabaena variabilis ATCC 29413] Length = 278 Score = 91.7 bits (226), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 60/171 (35%), Positives = 91/171 (53%), Gaps = 20/171 (11%) Query: 243 SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVC 302 ++LSPY+ GVLS R+ ++V +K A +NEL WR++++ L V Sbjct: 63 TRLSPYIRYGVLSLREI-----RDYVLDNVKHSDDATKLINELGWRDYWQRLY-----VK 112 Query: 303 MGKPFIPWTEKIEWNKD-------SHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRM 355 +G W ++ E+ S L K+G TG ID+ R+L G++HN +RM Sbjct: 113 LGNGI--WEDQEEYKTGYTPAEYASDLATDIKEGKTGLVCIDSFSRELRETGYLHNHMRM 170 Query: 356 ITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYF 406 A+++V + W+ G ++F+ LLDGD ASNN WQW AST + PYF Sbjct: 171 WLAAYIVHWRRIRWQEGAKWFLEHLLDGDPASNNMSWQWVASTFSQK-PYF 220 >gi|148261329|ref|YP_001235456.1| deoxyribodipyrimidine photo-lyase [Acidiphilium cryptum JF-5] gi|146403010|gb|ABQ31537.1| deoxyribodipyrimidine photo-lyase family protein (cryptochrome) [Acidiphilium cryptum JF-5] Length = 389 Score = 91.7 bits (226), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 77/265 (29%), Positives = 111/265 (41%), Gaps = 17/265 (6%) Query: 211 GEQNALHILRKFCKEKVYYYVEQRDIP--AIQGTSQLSPYLSIGVLSPRQC----WNRLK 264 G AL L F + Y P S+LSPY + G +S R+ W R + Sbjct: 47 GRAAALATLGSFLATRGEDYTRAMSSPVSGEAACSRLSPYFAYGCVSIREAAQAAWRRQR 106 Query: 265 EEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQ 324 E V + + S++ L W + + P +PF E + D L Sbjct: 107 E--VPAASRWGAALRSFIARLHWHCHFIQKLEAEPEAEW-RPFARIYEGMRPPADPARLA 163 Query: 325 AWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGD 384 AW +G TG+P IDAAMR L GW++ R+R + SF DL + W+ E + L D Sbjct: 164 AWAEGRTGYPFIDAAMRYLAAHGWINFRMRAMLMSFASHDLFLPWQ--ESGLVLARLFTD 221 Query: 385 LASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPH 444 Q +G + R+++P QG DP G IR +PEL V +H P Sbjct: 222 YEPGIHWPQCQMQSGETGINTVRVYSPVKQGFDQDPAGRLIRLHVPELAAVAGALVHEP- 280 Query: 445 SW----LDKNDLSLNYPLPIVDHKK 465 W ++ L YP IV H++ Sbjct: 281 -WRLDAAERARLCPEYPARIVIHEE 304 >gi|302847741|ref|XP_002955404.1| cryptochrome [Volvox carteri f. nagariensis] gi|300259246|gb|EFJ43475.1| cryptochrome [Volvox carteri f. nagariensis] Length = 738 Score = 91.3 bits (225), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 47/101 (46%), Positives = 53/101 (52%), Gaps = 2/101 (1%) Query: 314 IEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGE 373 + W D W QG TG P +DA MR+L GWM NR R AS L KDL VDWR G Sbjct: 592 VSWRNDMETFTRWAQGRTGLPFVDANMRELAVTGWMSNRGRQNVASLLTKDLGVDWRWGA 651 Query: 374 EYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQ 414 E F S L+D D+A N W + A GND P R F Q Sbjct: 652 ELFESLLVDCDVAVNYCNWNYFAGIGND--PRNRHFKTVTQ 690 >gi|222525279|ref|YP_002569750.1| putative deoxyribodipyrimidine photolyase [Chloroflexus sp. Y-400-fl] gi|222449158|gb|ACM53424.1| putative deoxyribodipyrimidine photolyase [Chloroflexus sp. Y-400-fl] Length = 271 Score = 90.9 bits (224), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 67/185 (36%), Positives = 93/185 (50%), Gaps = 10/185 (5%) Query: 226 KVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNEL 285 V++Y R+ +G S LSPYL G+LS + + + F I P + F +NEL Sbjct: 49 NVHHYARTRNDVVQRGVSMLSPYLRHGMLSLAEVRDSILGRFG---ITPDTEKF--VNEL 103 Query: 286 IWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNT 345 WR F++ + A + P K + L TG ID ++R+L T Sbjct: 104 AWRAFWQLVYAHLGDR-IHHDIEPAKHKARVPR-RRLPPDVTAATTGLVCIDESLRELYT 161 Query: 346 IGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPY 405 +G+MHN RM A++L+ L VDWR G + F LLDGD ASN+ WQW ST + PY Sbjct: 162 VGYMHNHARMWVAAYLIHWLGVDWREGADLFYRHLLDGDPASNSLSWQWVNSTFSHK-PY 220 Query: 406 FRIFN 410 IFN Sbjct: 221 --IFN 223 >gi|465501|sp|Q05380|YAT1_SYNP1 RecName: Full=Uncharacterized 31.6 kDa protein in atpI 5'region; AltName: Full=URF1 gi|480494|pir||S36967 hypothetical protein 1 (uncI 5' region) - Synechococcus sp. (PCC 6716) gi|49221|emb|CAA49877.1| unnamed protein product [Synechococcus sp.] Length = 284 Score = 90.1 bits (222), Expect = 6e-16, Method: Compositional matrix adjust. Identities = 76/298 (25%), Positives = 122/298 (40%), Gaps = 34/298 (11%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 +HL W R DLR+ DN LYAA ++ V+ VF P + ++A + ++ L + Sbjct: 5 LHLFWHRRDLRLADNLGLYAARQHTP-TVVGVFCFDPALLQGQDVAAVRVAYLLGCLQAL 63 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128 +++ Q+G Q D + + + T + ++ E RD+++ L Sbjct: 64 KEAYQQRGGCLLMVQ----GDPRQVIPEVATTLKATAVHWHEDVEPYARERDRVVAATLN 119 Query: 129 HRVICKSFD-DSVLLPPGSILNHALQMYKVYTPFRK--------------ALIQNLVQAD 173 I D +L PP ++ Q Y VYTPF + L + Sbjct: 120 DLGIAVHRQWDQLLHPPSAVQTQQGQPYTVYTPFWRNWSALPKAAPVPPPPDFAPLEATE 179 Query: 174 LRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQ 233 + S+P+P+ G FD+ + I GE A L F + +Y Y EQ Sbjct: 180 IASIPLPSTHDLG----------FDWSGELI---LAPGEAAAAQQLAHFSQHAIYEYGEQ 226 Query: 234 RDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLI-KPKSGAFSWLNELIWREF 290 R+ P GT+ LSP L GV+ R W + + ++ +W EL WREF Sbjct: 227 RNYPGRPGTALLSPALKFGVIGIRTVWAASEAALEHARSDEARASIRTWQQELAWREF 284 >gi|219128726|ref|XP_002184557.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1] gi|217404007|gb|EEC43956.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1] Length = 524 Score = 89.7 bits (221), Expect = 8e-16, Method: Compositional matrix adjust. Identities = 62/191 (32%), Positives = 89/191 (46%), Gaps = 22/191 (11%) Query: 242 TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWL-NELIWREFYRHLMAFYPS 300 +S+LS +L++G++SPR V + WL + L R+F+ +L S Sbjct: 345 SSRLSTFLALGIISPRT---------VHAITAEGGEGARWLCSHLTMRDFFIYLCFASGS 395 Query: 301 ---------VCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHN 351 V + IPW K + W QG+TG P+IDA MR+L G+ N Sbjct: 396 RLYQQEGLPVNAKRKNIPWYSPAAPQK-YDCWRRWAQGFTGLPLIDAGMRELCQTGYCSN 454 Query: 352 RLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNP 411 R+R AS L +DL +DWR G E L D +A+N G W + + G D P R F Sbjct: 455 RVRQNIASVLCRDLQIDWRAGAEVLQFLLRDHCVAANWGNWLYFSGVGPD--PKSRHFRS 512 Query: 412 TIQGKRFDPQG 422 Q R+DP+ Sbjct: 513 VSQALRYDPEA 523 >gi|213022877|ref|ZP_03337324.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp. enterica serovar Typhi str. 404ty] Length = 84 Score = 89.7 bits (221), Expect = 8e-16, Method: Compositional matrix adjust. Identities = 39/84 (46%), Positives = 60/84 (71%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M HLVW R DLR+ DN AL AAC ++ A+V+A++I+TP QW+ H ++ RQ+ FI A L Sbjct: 1 MPTHLVWFRRDLRLQDNLALAAACRDASARVLALYISTPAQWQAHDMAPRQAAFISAQLN 60 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDS 90 +Q +L++KGI +H+ ++F+ S Sbjct: 61 ALQTALAEKGIPLLFHEVADFNAS 84 >gi|311697144|gb|ADQ00016.1| deoxyribodipyrimidine photolyase [marine bacterium HP15] Length = 505 Score = 89.7 bits (221), Expect = 8e-16, Method: Compositional matrix adjust. Identities = 118/497 (23%), Positives = 198/497 (39%), Gaps = 73/497 (14%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSD--AKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 + + L+ +LR+ D+ Y A V+ ++I P RQ I + +FI+ +L Sbjct: 1 MQVFLLKRNLRLQDSDPFYEAMRGYRRFGPVLPLYIHEPSIIRQPDICLQHQNFIFETLD 60 Query: 67 QVQKSLSQKG-----IVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDK 121 ++ + + G +V + + I + C Q T+ QYE RDK Sbjct: 61 ELSQEIRSIGGKLLELVGEAVPTLDVIHQIAPIARICTHQETTQ---GVQYE-----RDK 112 Query: 122 LLEK-RLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVP 180 + K ++ V F ++ G + Q + Y F ++ + L L V Sbjct: 113 AVRKWCSRNSVKLVEFQQDGVVRAG-CRDQKKQTFPEY--FADSVNRELKDPGGIDLGVR 169 Query: 181 AIRLTGPVTPS-NIPRF--FDYPFQAIDPMFPIGEQNALHILRKFCK-EKVYYYVEQRDI 236 P P IPR +D PF+ G A + + F + Y + Sbjct: 170 FASTPLPSAPRVTIPRAQGYDRPFRQRG-----GRSEAEKLFKDFFSVGSINSYPFKLSS 224 Query: 237 P--AIQGTSQLSPYLSIGVLSPRQCWNRLKE------EFVDLLI--KPKSGAFSWLNELI 286 P A +G S++S YLS G++S R + + ++D K + A +L+ L+ Sbjct: 225 PNTAWEGCSRISAYLSYGIVSDRAVMKAIDDVVSSGHSYMDAAAFEKLQGRARFYLDRLM 284 Query: 287 WREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTI 346 WR Y + P++ + +++ L +AW+ G TGFP IDA +R L Sbjct: 285 WRRNYLQMFEDDPTLEHRHALSQFDGVRISDREDPLFKAWQSGRTGFPFIDACVRCLKET 344 Query: 347 GWMHNRLRMITASFLVKDL--------------LVDWRIGEEYFMSQLLDGDLASNNGGW 392 GW++ R R SF +L +D+ G + + Q++ G + NG Sbjct: 345 GWLNMRGRAAITSFATMNLWHDSLNVAAFLAGEFLDYMPGIHWPIIQVVSGTASPQNG-- 402 Query: 393 QWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIH-----APH-SW 446 ++ P Q D G FIR ++PEL+++ +IH H S Sbjct: 403 -------------IMVYCPMKQALDHDKDGVFIRKYVPELSDLQAPHIHDLSRTTNHLSD 449 Query: 447 LDKNDLSLNYPLPIVDH 463 L + L YP PIVDH Sbjct: 450 LARRSGFLPYPAPIVDH 466 >gi|282901135|ref|ZP_06309066.1| deoxyribodipyrimidine photolyase-like protein [Cylindrospermopsis raciborskii CS-505] gi|281193967|gb|EFA68933.1| deoxyribodipyrimidine photolyase-like protein [Cylindrospermopsis raciborskii CS-505] Length = 264 Score = 89.7 bits (221), Expect = 9e-16, Method: Compositional matrix adjust. Identities = 64/205 (31%), Positives = 106/205 (51%), Gaps = 24/205 (11%) Query: 209 PIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFV 268 P G + A+ L K Y + R+ ++LSPY+ GVLS R+ ++E + Sbjct: 33 PGGRKAAVEQLEKV---NAVLYAKTRNY-LTGAVTRLSPYIRHGVLSLRE----VREYIL 84 Query: 269 DLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSH------- 321 + + + G+ +NEL WR++++ L + +GK W + E+ H Sbjct: 85 NTVENSEDGS-KLINELGWRDYWQRLY-----MKLGKGI--WENQEEYKTGYHRGDYSHT 136 Query: 322 LLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLL 381 L + ++G TG ID+ ++L G++HN +RM AS+++ + W+ G ++F+ LL Sbjct: 137 LPEDIREGKTGMVCIDSFSQELRVTGYLHNHIRMWLASYIIHWRKIQWQAGAKWFLQHLL 196 Query: 382 DGDLASNNGGWQWAASTGNDSVPYF 406 DGD ASNN WQW AST + PYF Sbjct: 197 DGDPASNNMSWQWVASTFSHK-PYF 220 >gi|254468896|ref|ZP_05082302.1| deoxyribodipyrimidine photo-lyase [beta proteobacterium KB13] gi|207087706|gb|EDZ64989.1| deoxyribodipyrimidine photo-lyase [beta proteobacterium KB13] Length = 477 Score = 89.7 bits (221), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 114/467 (24%), Positives = 195/467 (41%), Gaps = 53/467 (11%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 +++VWL+ DLR+ D++ LY A + I ++I P R FI SL + Sbjct: 5 INIVWLKRDLRLQDHEPLYRA-QEENIPFILLYIYEPSLILDPHYDKRHWRFIQESLEDI 63 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEV-RRDKLLEKRL 127 Q L++ Q + +S++ + + + +F + + +N RDK + Sbjct: 64 QLELAKN----QNKLSIAYGESVDIFNELSNRYDIQYVFSHEETGLNTTFERDKNVANFF 119 Query: 128 QHRVIC--KSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185 + + I +S + V+ LQ K + KA + + ++ P + Sbjct: 120 KRQNITWIESQSNGVI--------RGLQDRKTWD---KAWARFMRDKTIKINPQKLNIID 168 Query: 186 GPVTPSNIPRFFDYPFQAIDPMFPIGEQ-NALHILRKF--CKEKVYYYVEQRDIPAIQGT 242 NIP F + D F G A L F + + YY + + Sbjct: 169 IDFGEINIPSFEE------DSNFQKGGMVEAQTTLEDFFSTRGQDYYKFISKPHKSRSSC 222 Query: 243 SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVC 302 S++S Y++ G +S RQ + ++ E + + + A S + + W + H + + S C Sbjct: 223 SRMSAYIAYGNISIRQIYQKILENWNRVGWRRSMAALS--SRIHW---HCHFIQKFESEC 277 Query: 303 --------MGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLR 354 G P+ + E + D +W G TGFP+IDA+MR L G+++ R R Sbjct: 278 RIENETINKGYQNFPYLVEDEEHAD---FTSWLNGMTGFPLIDASMRALRYSGYINFRSR 334 Query: 355 MITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQ 414 + SF L + W++ + LD + + Q A G + RI+NP Q Sbjct: 335 AMVVSFACHYLRIHWKLVAKALARLFLDFEPGIHYPQIQMQA--GVTGINTIRIYNPKKQ 392 Query: 415 GKRFDPQGTFIRHWLPELNNVPTQY-IHAPHSWLDKNDL---SLNYP 457 DP+ FI+ W+PELN+ +Y I+ P L NDL NYP Sbjct: 393 AMDHDPEAIFIKTWIPELNSHQPEYIINLP---LQSNDLFSNESNYP 436 >gi|28625001|emb|CAD24679.1| photolyase related protein [Aphrocallistes vastus] Length = 563 Score = 89.0 bits (219), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 75/300 (25%), Positives = 142/300 (47%), Gaps = 24/300 (8%) Query: 183 RLTGPVTPSNIPR----FFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPA 238 RL P+ PS IP+ F + ++ +F GE+ L ++ + ++ D Sbjct: 232 RLDSPL-PSEIPKLNALFTEEEIAKLNFIFQGGERRTEDYLNEYREARLRDVSGDEDASP 290 Query: 239 IQGTSQ-LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHL--M 295 I + +SP+L G ++PR +N L + D + L ++ R+F + + Sbjct: 291 IAAKAMGISPHLRFGCITPRHLFNFLVKTIKDANYS-RIKINKVLAGIMARDFALQVSQL 349 Query: 296 AFYPS--VCMGKPFIPWTEKIEWNKDSH-LLQAWKQGYTGFPIIDAAMRQLNTIGWMHNR 352 P + + K +P I W+K+++ +++ TGFP DAA+ QL T G++ N Sbjct: 350 QTIPERIISLNKICLP----IPWDKNNNEIVEKLTDAQTGFPFFDAAITQLKTEGYVINE 405 Query: 353 LRMITASFLVKDLL-VDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNP 411 + A+F+ LL V W G+ +F L+ DLA + W A+ + + +P Sbjct: 406 VSEALATFVTNSLLWVSWEEGQNFFSQHLICFDLAMSTHSWLEASGSTMVTGRQKSYQDP 465 Query: 412 TI-QGKRFDPQGTFIRHWLPELNNVPTQYIHAP-HSWLDKND-----LSLNYPLPIVDHK 464 + K+ DP G +I+ +LP+ N P ++IH P ++ L+ + ++YP P+ +++ Sbjct: 466 LLFVSKKLDPNGEYIKRYLPKFINFPIEFIHKPGNASLEAQQAANCVIDIDYPKPLFEYE 525 >gi|260220871|emb|CBA28870.1| hypothetical protein Csp_A09300 [Curvibacter putative symbiont of Hydra magnipapillata] Length = 529 Score = 88.6 bits (218), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 62/238 (26%), Positives = 107/238 (44%), Gaps = 7/238 (2%) Query: 211 GEQNALHILRKFCKEKVYYYVEQRDIP--AIQGTSQLSPYLSIGVLSPRQCWNRLKE--- 265 G A +L+ F ++ Y P A + S+LSPYL++G LS R+ ++E Sbjct: 209 GRARAEQVLQSFLTDRSARYRGGISSPLSASEACSRLSPYLALGCLSVREVVQAVQEVQG 268 Query: 266 EFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQA 325 + + ++G S+ + L W + + P + + E + L+ Sbjct: 269 ARGEGRKRHQAGLRSFTSRLHWHCHFIQKLESEPDIEFRNMHRGYDGLREAEHNPEHLKV 328 Query: 326 WKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDL 385 G TG+P++DA + L GW++ R+R + S L + WR E+ + LD + Sbjct: 329 LMAGRTGWPLVDACIAMLRETGWVNFRMRAMIVSIAAYPLWLHWRPVGEWLAREFLDYEP 388 Query: 386 ASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAP 443 + Q + T ++P RI+NP Q + DP G F+R WLP + VP ++ P Sbjct: 389 GIHWSQLQMQSGTTGINIP--RIYNPIKQARDQDPDGQFVRRWLPAMRKVPDAWLFEP 444 >gi|186686489|ref|YP_001869685.1| deoxyribodipyrimidine photolyase-like protein [Nostoc punctiforme PCC 73102] gi|186468941|gb|ACC84742.1| deoxyribodipyrimidine photolyase-like protein [Nostoc punctiforme PCC 73102] Length = 295 Score = 88.2 bits (217), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 59/171 (34%), Positives = 90/171 (52%), Gaps = 20/171 (11%) Query: 243 SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVC 302 ++LSPY+ GVLS R+ ++V ++ K+ A +NEL WR++++ L V Sbjct: 67 TRLSPYIRYGVLSLREI-----RDYVLDQVQQKNDATKLINELGWRDYWQRLY-----VK 116 Query: 303 MGKPFIPWTEKIEWNKD-------SHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRM 355 +G W ++ E+ L Q +QG TG ID+ L G++HN RM Sbjct: 117 LGDEI--WKDQEEYKTGYTVAEYLPELPQDIRQGTTGRVCIDSFSHDLKETGYLHNHARM 174 Query: 356 ITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYF 406 A+++V + W+ G ++F+ LLDGD ASNN WQW AST + PYF Sbjct: 175 WLAAYIVHWRRIGWQAGAKWFLEHLLDGDPASNNMSWQWVASTFSQK-PYF 224 >gi|167009708|ref|ZP_02274639.1| deoxyribodipyrimidine photolyase [Francisella tularensis subsp. holarctica FSC200] gi|254367213|ref|ZP_04983243.1| deoxyribodipyrimidine photolyase [Francisella tularensis subsp. holarctica 257] gi|295313747|ref|ZP_06804324.1| deoxyribodipyrimidine photolyase [Francisella tularensis subsp. holarctica URFT1] gi|134253033|gb|EBA52127.1| deoxyribodipyrimidine photolyase [Francisella tularensis subsp. holarctica 257] Length = 164 Score = 87.8 bits (216), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 46/125 (36%), Positives = 62/125 (49%), Gaps = 2/125 (1%) Query: 319 DSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMS 378 + +AWK G TG+P+IDA MR L W++ R+R + SF L +DWR+ Y Sbjct: 42 NQQCFEAWKTGNTGYPMIDACMRALIATRWLNFRMRAMLMSFASYHLWLDWRVTSLYLAG 101 Query: 379 QLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQ 438 D + + Q +G + RI+NP Q P G FIR WLPEL NV + Sbjct: 102 LFTDYEPGIHYS--QVQMQSGTTGINSIRIYNPIKQSIDQYPNGEFIRRWLPELENVSNE 159 Query: 439 YIHAP 443 IH P Sbjct: 160 NIHTP 164 >gi|80971696|gb|ABB52818.1| cryptochrome 2 [Sesamia nonagrioides] Length = 264 Score = 87.4 bits (215), Expect = 5e-15, Method: Compositional matrix adjust. Identities = 59/160 (36%), Positives = 78/160 (48%), Gaps = 14/160 (8%) Query: 245 LSPYLSIGVLSPRQ-CWN--RLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSV 301 LSP L G LS R CW+ L E + +S + +LIWRE++ + P+ Sbjct: 110 LSPALRFGCLSVRSFCWSVQDLFREVHQGRLATQSASHFITGQLIWREYFYTMSVNNPNY 169 Query: 302 CM--GKPF---IPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMI 356 G P IPW N + LQ W +G TGFP +DAAMRQL T GW+H+ R Sbjct: 170 GQMSGNPICLDIPWK-----NPEGDELQRWVEGRTGFPFVDAAMRQLRTEGWLHHVARNT 224 Query: 357 TASFLVKDLL-VDWRIGEEYFMSQLLDGDLASNNGGWQWA 395 A FL + L + W G +F+ LLD D + G W W Sbjct: 225 VAFFLTRGTLWLSWEHGLNHFLKYLLDADWSVCAGNWMWV 264 >gi|17230458|ref|NP_487006.1| hypothetical protein alr2966 [Nostoc sp. PCC 7120] gi|17132060|dbj|BAB74665.1| alr2966 [Nostoc sp. PCC 7120] Length = 278 Score = 87.4 bits (215), Expect = 5e-15, Method: Compositional matrix adjust. Identities = 59/171 (34%), Positives = 90/171 (52%), Gaps = 20/171 (11%) Query: 243 SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVC 302 ++LSPY+ GVLS + N +V +K A +NEL WR++++ L + Sbjct: 63 TRLSPYIRYGVLSLGEIRN-----YVLDNVKHPDDAKKLINELGWRDYWQRLY-----IK 112 Query: 303 MGKPFIPWTEKIEWNKD-------SHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRM 355 +G W ++ E+ S L K+G TG ID+ R+L G++HN +RM Sbjct: 113 LGNGI--WEDQEEYKTGYTPAEYASDLAADIKEGKTGLVCIDSFSRELQETGYLHNHMRM 170 Query: 356 ITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYF 406 A+++V + W+ G ++F+ LLDGD ASNN WQW AST + PYF Sbjct: 171 WLAAYIVHWRRIRWQEGAKWFLEHLLDGDPASNNMSWQWVASTFSQK-PYF 220 >gi|290953049|ref|ZP_06557670.1| deoxyribodipyrimidine photolyase [Francisella tularensis subsp. holarctica URFT1] Length = 150 Score = 87.4 bits (215), Expect = 5e-15, Method: Compositional matrix adjust. Identities = 46/125 (36%), Positives = 62/125 (49%), Gaps = 2/125 (1%) Query: 319 DSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMS 378 + +AWK G TG+P+IDA MR L W++ R+R + SF L +DWR+ Y Sbjct: 28 NQQCFEAWKTGNTGYPMIDACMRALIATRWLNFRMRAMLMSFASYHLWLDWRVTSLYLAG 87 Query: 379 QLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQ 438 D + + Q +G + RI+NP Q P G FIR WLPEL NV + Sbjct: 88 LFTDYEPGIHYS--QVQMQSGTTGINSIRIYNPIKQSIDQYPNGEFIRRWLPELENVSNE 145 Query: 439 YIHAP 443 IH P Sbjct: 146 NIHTP 150 >gi|237654597|ref|YP_002890911.1| deoxyribodipyrimidine photo-lyase [Thauera sp. MZ1T] gi|237625844|gb|ACR02534.1| Deoxyribodipyrimidine photo-lyase [Thauera sp. MZ1T] Length = 526 Score = 87.0 bits (214), Expect = 6e-15, Method: Compositional matrix adjust. Identities = 74/286 (25%), Positives = 122/286 (42%), Gaps = 24/286 (8%) Query: 211 GEQNALHILRKFCKEKVYYYVEQRDIP--AIQGTSQLSPYLSIGVLSPRQCWNRLKEEFV 268 G AL +L F + Y P A S+LSPYL+ G LS R+ + Sbjct: 210 GRHAALEVLHDFLDARSGQYRGGISSPLKAPTACSRLSPYLAWGCLSLRELVQATRARVA 269 Query: 269 DL--LIKPKSGAFSWLNELIWREFYRHLMAFYPSV---CMGKPFIPWTEKIEWNKDSHLL 323 L + ++G ++L+ L W + + P++ + + + E EWN+ +H Sbjct: 270 ALPEGDRRRAGLAAFLSRLYWHCHFIQKLESEPTLEFRNLHRGYDGLREP-EWNQ-AHF- 326 Query: 324 QAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDG 383 A G TG+P++DA + L GW++ R+R + S L + WR + LD Sbjct: 327 DALVGGRTGWPLVDACVAMLRATGWLNFRMRAMLVSVAAYPLWLHWREVGLWLARAFLD- 385 Query: 384 DLASNNGGWQWA---ASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYI 440 G W+ +G + R++NP Q + DPQG F+R WLP L VP ++ Sbjct: 386 ----YEPGIHWSQLQMQSGTTGINTTRVYNPIKQARDHDPQGVFVRRWLPALRRVPDTWL 441 Query: 441 HAPHSWLDKND------LSLNYPLPIVDHKKACHHTLNQYYAAKKQ 480 P + + + LP+VD + A + +A + Q Sbjct: 442 FEPWRMPESVQARCGVRVGEDIALPVVDLESATRAAKTRIHALRAQ 487 >gi|261335266|emb|CBH18260.1| DNA photolyase, putative [Trypanosoma brucei gambiense DAL972] Length = 848 Score = 87.0 bits (214), Expect = 6e-15, Method: Compositional matrix adjust. Identities = 67/240 (27%), Positives = 102/240 (42%), Gaps = 28/240 (11%) Query: 240 QGTSQLSPYLSIGVLSPRQCWNRLK----EEFVDLLIKPKSGAFSWLNELIWREFYRHLM 295 Q S+LSPYLS G LSPR+ + L+ E D ++ + + + R Y H M Sbjct: 526 QRLSRLSPYLSCGALSPRRFYEELRRFTSEHLRDNFVQQQ---YREALLRLSRRDYWHWM 582 Query: 296 AFYPSVCMGKPFIPWTEKIE----WNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHN 351 + + P E + W D ++Q W G TG P DAAMR+L G++ + Sbjct: 583 GLRYGPLLFYEYGPRPEHTDDIADWRHDPKIVQKWCAGLTGIPFADAAMRELTLTGFVAD 642 Query: 352 RLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNP 411 R L + DWR+G E+ +D D G + + D F Sbjct: 643 EGRQGLIWLLSRGYGQDWRLGAEWLERCSIDYDPFVCYGNCAYYSELVRDD------FGE 696 Query: 412 TIQ-----GKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKN------DLSLNYPLPI 460 T++ D G +++ WLP+L+ +P YIH PH ++ L NYP P+ Sbjct: 697 TVRNIHWLAHHHDQTGIYVKKWLPQLSKIPPVYIHRPHVLTERMQAMHGVQLGKNYPYPL 756 >gi|219848494|ref|YP_002462927.1| DNA photolyase FAD-binding [Chloroflexus aggregans DSM 9485] gi|219542753|gb|ACL24491.1| DNA photolyase FAD-binding [Chloroflexus aggregans DSM 9485] Length = 271 Score = 87.0 bits (214), Expect = 6e-15, Method: Compositional matrix adjust. Identities = 78/225 (34%), Positives = 104/225 (46%), Gaps = 28/225 (12%) Query: 186 GPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245 GP TPS P + G AL LR F V Y R+ A + SQL Sbjct: 27 GPATPS--------PIRG-------GRWAALRRLRAF---DVRNYARTRNDVARRTVSQL 68 Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305 SPYL GVL+ + + + F P + F +NEL WR F++ + A + + Sbjct: 69 SPYLRHGVLTLAEVRDSILNRFGH---TPDTEKF--VNELAWRAFWQIVYA-HLGERIHH 122 Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365 P + + S L TG ID ++++L T G+MHN RM A++L L Sbjct: 123 DLEPAKHRSRVARRS-LPPEVLTATTGLVCIDESLQELYTTGYMHNHARMWVAAYLQHWL 181 Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFN 410 VDWR G + F LLDGD ASN+ WQW ST + PY IFN Sbjct: 182 GVDWREGADLFYRHLLDGDPASNSLSWQWVGSTFSHK-PY--IFN 223 >gi|74025462|ref|XP_829297.1| DNA photolyase [Trypanosoma brucei TREU927] gi|70834683|gb|EAN80185.1| DNA photolyase, putative [Trypanosoma brucei] Length = 848 Score = 87.0 bits (214), Expect = 6e-15, Method: Compositional matrix adjust. Identities = 67/240 (27%), Positives = 102/240 (42%), Gaps = 28/240 (11%) Query: 240 QGTSQLSPYLSIGVLSPRQCWNRLK----EEFVDLLIKPKSGAFSWLNELIWREFYRHLM 295 Q S+LSPYLS G LSPR+ + L+ E D ++ + + + R Y H M Sbjct: 526 QRLSRLSPYLSCGALSPRRFYEELRRFTSEHLRDNFVQQQ---YREALLRLSRRDYWHWM 582 Query: 296 AFYPSVCMGKPFIPWTEKIE----WNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHN 351 + + P E + W D ++Q W G TG P DAAMR+L G++ + Sbjct: 583 GLRYGPLLFYEYGPRPEHTDDIADWRHDPKIVQKWCAGLTGIPFADAAMRELTLTGFVAD 642 Query: 352 RLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNP 411 R L + DWR+G E+ +D D G + + D F Sbjct: 643 EGRQGLIWLLSRGYGQDWRLGAEWLERCSIDYDPFVCYGNCAYYSELVRDD------FGE 696 Query: 412 TIQ-----GKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKN------DLSLNYPLPI 460 T++ D G +++ WLP+L+ +P YIH PH ++ L NYP P+ Sbjct: 697 TVRNIHWLAHHHDQTGIYVKKWLPQLSKIPPVYIHRPHVLTERMQAMHGVQLGKNYPYPL 756 >gi|282896459|ref|ZP_06304479.1| deoxyribodipyrimidine photolyase-like protein [Raphidiopsis brookii D9] gi|281198565|gb|EFA73446.1| deoxyribodipyrimidine photolyase-like protein [Raphidiopsis brookii D9] Length = 262 Score = 87.0 bits (214), Expect = 7e-15, Method: Compositional matrix adjust. Identities = 56/173 (32%), Positives = 94/173 (54%), Gaps = 20/173 (11%) Query: 241 GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPS 300 ++LSPY+ GVLS R+ ++E ++ + + G+ +NEL WR++++ L Sbjct: 61 AVTRLSPYIRHGVLSLRE----VREYILNTVENSEDGS-KLINELGWRDYWQRLY----- 110 Query: 301 VCMGKPFIPWTEKIEWNKDSH-------LLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRL 353 + +GK W + E+ H L + ++ TG ID+ ++L G++HN + Sbjct: 111 MKLGKGI--WENQEEYKTGYHTEDYSHNLPEDIQESKTGLVCIDSFSQELRVTGYLHNHI 168 Query: 354 RMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYF 406 RM AS+++ + W+ G ++F+ LLDGD ASNN WQW AST + PYF Sbjct: 169 RMWLASYIIHWRKIQWQAGAKWFLQHLLDGDPASNNMSWQWVASTFSHK-PYF 220 >gi|146078221|ref|XP_001463490.1| DNA photolyase [Leishmania infantum JPCM5] gi|134067576|emb|CAM65855.1| putative DNA photolyase [Leishmania infantum JPCM5] Length = 932 Score = 86.7 bits (213), Expect = 7e-15, Method: Compositional matrix adjust. Identities = 67/244 (27%), Positives = 104/244 (42%), Gaps = 36/244 (14%) Query: 240 QGTSQLSPYLSIGVLSPRQCWNRLKE-------------EFVDLLIKPKSGAFSWLNELI 286 Q +++SPY+++G LSPR+ + L+E +F + L++ + Sbjct: 592 QKLARVSPYIALGALSPRKYYEVLREFAQENQRDAFVQQQFREGLLR------------L 639 Query: 287 WREFYRHLMAFYPSVCMGKPFIPWTEKI----EWNKDSHLLQAWKQGYTGFPIIDAAMRQ 342 R Y H M + + P E EW D ++Q W G TG P DAAMR+ Sbjct: 640 SRRDYWHWMGLRFGDRLFFSYGPHPEHTDDVPEWRHDRKVVQRWCDGLTGIPFADAAMRE 699 Query: 343 LNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDS 402 L G++ R A L + DWR+G E+ LD D G + ++ D Sbjct: 700 LVGTGFVAQEGRQALAWLLTRGYGQDWRVGAEWMERCSLDYDPFVCYGNYAYSCGLMLDD 759 Query: 403 VPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND------LSLNY 456 + N + D G +++ WLP+L+ VP YIH PH ++ L NY Sbjct: 760 FGE-PVRNVYYLAHQHDQTGIYVKKWLPQLSKVPPVYIHRPHVLTERMQAMHGVYLGKNY 818 Query: 457 PLPI 460 P P+ Sbjct: 819 PYPL 822 >gi|322496922|emb|CBZ31992.1| unnamed protein product [Leishmania donovani BPK282A1] Length = 932 Score = 86.7 bits (213), Expect = 7e-15, Method: Compositional matrix adjust. Identities = 67/244 (27%), Positives = 104/244 (42%), Gaps = 36/244 (14%) Query: 240 QGTSQLSPYLSIGVLSPRQCWNRLKE-------------EFVDLLIKPKSGAFSWLNELI 286 Q +++SPY+++G LSPR+ + L+E +F + L++ + Sbjct: 592 QKLARVSPYIALGALSPRKYYEVLREFAQENQRDAFVQQQFREGLLR------------L 639 Query: 287 WREFYRHLMAFYPSVCMGKPFIPWTEKI----EWNKDSHLLQAWKQGYTGFPIIDAAMRQ 342 R Y H M + + P E EW D ++Q W G TG P DAAMR+ Sbjct: 640 SRRDYWHWMGLRFGDRLFFSYGPHPEHTDDVPEWRHDRKVVQRWCDGLTGIPFADAAMRE 699 Query: 343 LNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDS 402 L G++ R A L + DWR+G E+ LD D G + ++ D Sbjct: 700 LVGTGFVAQEGRQALAWLLTRGYGQDWRVGAEWMERCSLDYDPFVCYGNYAYSCGLMLDD 759 Query: 403 VPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND------LSLNY 456 + N + D G +++ WLP+L+ VP YIH PH ++ L NY Sbjct: 760 FGE-PVRNVYYLAHQHDQTGIYVKKWLPQLSKVPPVYIHRPHVLTERMQAMHGVYLGKNY 818 Query: 457 PLPI 460 P P+ Sbjct: 819 PYPL 822 >gi|322488942|emb|CBZ24191.1| putative DNA photolyase [Leishmania mexicana MHOM/GT/2001/U1103] Length = 933 Score = 86.7 bits (213), Expect = 8e-15, Method: Compositional matrix adjust. Identities = 67/244 (27%), Positives = 104/244 (42%), Gaps = 36/244 (14%) Query: 240 QGTSQLSPYLSIGVLSPRQCWNRLKE-------------EFVDLLIKPKSGAFSWLNELI 286 Q +++SPY+++G LSPR+ + L+E +F + L++ + Sbjct: 593 QKLARVSPYIALGALSPRKYYEVLREFAQANQRDAFVQQQFREGLLR------------L 640 Query: 287 WREFYRHLMAFYPSVCMGKPFIPWTEKI----EWNKDSHLLQAWKQGYTGFPIIDAAMRQ 342 R Y H M + + P E EW D ++Q W G TG P DAAMR+ Sbjct: 641 SRRDYWHWMGLRFGDRLFFSYGPHPEHTDDVPEWRHDRKVVQRWCDGLTGIPFADAAMRE 700 Query: 343 LNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDS 402 L G++ R A L + DWR+G E+ LD D G + ++ D Sbjct: 701 LVGTGFVAQEGRQALAWLLTRGYGQDWRLGAEWMERCSLDYDPFVCYGNYAYSCGLMLDD 760 Query: 403 VPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND------LSLNY 456 + N + D G +++ WLP+L+ VP YIH PH ++ L NY Sbjct: 761 FGE-PVRNVYYLAHQHDQTGIYVKKWLPQLSKVPPVYIHRPHVLTERMQAMHGVYLGRNY 819 Query: 457 PLPI 460 P P+ Sbjct: 820 PYPL 823 >gi|323650256|gb|ADX97214.1| cryptochrome 1a isoform 1 [Perca flavescens] Length = 278 Score = 86.3 bits (212), Expect = 9e-15, Method: Compositional matrix adjust. Identities = 50/138 (36%), Positives = 72/138 (52%), Gaps = 8/138 (5%) Query: 336 IDAAMRQLNTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQW 394 IDA M QL GW+H+ R A FL + DL + W G + F LLD D + N G W W Sbjct: 1 IDAIMTQLRQEGWIHHLARHAVACFLTRGDLWIGWEEGMKVFEELLLDADWSVNAGSWMW 60 Query: 395 AASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLD------ 448 S + +F + P G+R DP G +IR +LP L P +YI+ P + + Sbjct: 61 L-SCSSFFQQFFHCYCPVGFGRRTDPNGDYIRRYLPVLRGFPAKYIYDPWNAPEIVQKAA 119 Query: 449 KNDLSLNYPLPIVDHKKA 466 K + ++YP P+V+H +A Sbjct: 120 KCVIGVHYPKPMVNHAEA 137 >gi|171057934|ref|YP_001790283.1| deoxyribodipyrimidine photolyase-like protein [Leptothrix cholodnii SP-6] gi|170775379|gb|ACB33518.1| Deoxyribodipyrimidine photolyase-like protein [Leptothrix cholodnii SP-6] Length = 420 Score = 86.3 bits (212), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 69/217 (31%), Positives = 98/217 (45%), Gaps = 18/217 (8%) Query: 195 RFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVL 254 R D P D + P I R + Y A+ G LSPYL+ G++ Sbjct: 8 RLEDSPAPWADTLPPTRSAALARIAR--VRPAAYARTRNHLDGAVTG---LSPYLTHGLI 62 Query: 255 S-PRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEK 313 + P L+ E +++ K + EL WREF+RH + + Sbjct: 63 TLPEVLAGVLQRERLEVRHK-------LVFELGWREFFRHAWGHAGDAILQSLHT--GPR 113 Query: 314 IEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGE 373 + L +Q TG P+ID A+R L G +HN RM AS++V V WR G Sbjct: 114 PDETCAPVLPADIRQARTGVPVIDEAVRTLYATGTLHNHARMWLASYVVHLRHVHWRAGA 173 Query: 374 EYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFN 410 ++ ++ LLDGDLASN+ WQW A TG+ PY +FN Sbjct: 174 DWLVAHLLDGDLASNHLSWQWVAGTGSHK-PY--LFN 207 >gi|332093769|gb|EGI98823.1| deoxyribodipyrimidine photo-lyase domain protein [Shigella boydii 5216-82] Length = 78 Score = 86.3 bits (212), Expect = 1e-14, Method: Composition-based stats. Identities = 39/73 (53%), Positives = 50/73 (68%) Query: 407 RIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKA 466 RIFNP QG++FD +G FIR WLPEL +VP + +H P W K + L+YP PIV+HK+A Sbjct: 4 RIFNPITQGEKFDREGEFIRRWLPELRDVPGKAVHEPWKWAQKAGVKLDYPQPIVEHKEA 63 Query: 467 CHHTLNQYYAAKK 479 TL Y AA+K Sbjct: 64 RVQTLAAYEAARK 76 >gi|71386194|gb|AAZ31072.1| cryptochrome 2B apoprotein [Medicago sativa] Length = 154 Score = 85.9 bits (211), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 45/107 (42%), Positives = 66/107 (61%), Gaps = 6/107 (5%) Query: 362 VKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQ 421 VK LL+ W+ G +YF LLD DL S+ GWQ+ + + D R+ +P IQG ++D + Sbjct: 2 VKMLLIPWKWGMKYFWDTLLDADLESDILGWQYISGSLPDGHELERLDDPEIQGTKYDSE 61 Query: 422 GTFIRHWLPELNNVPTQYIH----APHSWLDKNDLSL--NYPLPIVD 462 G ++R WLPEL +PT++IH AP + L + + L NYP PI+D Sbjct: 62 GEYVRQWLPELARIPTEWIHHPWNAPPTVLRASGVELGQNYPKPIID 108 >gi|213423099|ref|ZP_03356117.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp. enterica serovar Typhi str. E01-6750] Length = 47 Score = 85.9 bits (211), Expect = 1e-14, Method: Composition-based stats. Identities = 36/47 (76%), Positives = 40/47 (85%) Query: 380 LLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIR 426 L+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT Q +RFD G FIR Sbjct: 1 LIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQRERFDRDGEFIR 47 >gi|300309758|ref|YP_003773850.1| deoxyribodipyrimidine photolyase [Herbaspirillum seropedicae SmR1] gi|300072543|gb|ADJ61942.1| deoxyribodipyrimidine photolyase protein [Herbaspirillum seropedicae SmR1] Length = 439 Score = 85.9 bits (211), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 64/186 (34%), Positives = 91/186 (48%), Gaps = 21/186 (11%) Query: 241 GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMA---- 296 + LSPYL+ G++S R + + + P ++ EL WR FYR++ + Sbjct: 71 AVTGLSPYLTHGMVSLRDVLAGVCQRY------PLEVQHKFVYELGWRAFYRYVWSRRGA 124 Query: 297 -FYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRM 355 + S+ G +P E L + G TG P+ID A+R L G +HN RM Sbjct: 125 RIFDSLHAGP--LP-----EAAYARELPDDIRAGATGVPVIDQAVRTLYATGNLHNHARM 177 Query: 356 ITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQG 415 AS++V V WR G ++ + LLDGDLASN+ WQW A TG+ PY +FN Sbjct: 178 WLASYVVHLRKVHWRAGADWMVGHLLDGDLASNHLSWQWVAGTGSHK-PY--LFNAENVA 234 Query: 416 KRFDPQ 421 K PQ Sbjct: 235 KYAPPQ 240 >gi|119510319|ref|ZP_01629455.1| hypothetical protein N9414_16217 [Nodularia spumigena CCY9414] gi|119465063|gb|EAW45964.1| hypothetical protein N9414_16217 [Nodularia spumigena CCY9414] Length = 280 Score = 85.1 bits (209), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 58/173 (33%), Positives = 94/173 (54%), Gaps = 20/173 (11%) Query: 241 GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPS 300 ++LSPY+ GVLS R+ ++++ ++ + P A +NEL WR++++ L Sbjct: 61 AVTRLSPYIRYGVLSLRE----VRDDVLEKVQDPND-ASKLINELGWRDYWQRLY----- 110 Query: 301 VCMGKPFIPWTEKIEWN-----KD--SHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRL 353 V +G W ++ E+ KD L G TG ID+ ++L + G++HN + Sbjct: 111 VKLGDRI--WEDQEEYKTGYSPKDYADQLPADITAGTTGMVCIDSFSQELRSTGYLHNHM 168 Query: 354 RMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYF 406 RM A+++V + W+ G ++F+ LLDGD ASNN WQW AST + PYF Sbjct: 169 RMWLAAYIVHWRRIRWQAGAKWFLEHLLDGDPASNNMSWQWVASTFSHK-PYF 220 >gi|149928547|ref|ZP_01916775.1| probable deoxyribodipyrimidine photolyase [Limnobacter sp. MED105] gi|149822733|gb|EDM81992.1| probable deoxyribodipyrimidine photolyase [Limnobacter sp. MED105] Length = 426 Score = 85.1 bits (209), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 61/190 (32%), Positives = 91/190 (47%), Gaps = 19/190 (10%) Query: 241 GTSQLSPYLSIGVLSPRQCWNRLKEE----FVDLLIKPKSGAFSWLNELIWREFYRHLMA 296 + LSP+++ G LS R+ L E+ F D LI E WREF++H A Sbjct: 38 AVTGLSPWITHGYLSVREAAQLLMEKYRLSFEDKLI----------FEFAWREFFKHAHA 87 Query: 297 FYPSVCMGKPFIP-WTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRM 355 + + P W+ K + L + ++G TG IDA + L G++HN +RM Sbjct: 88 ELGNGILSDVRRPVWSGKY----NQQLPEDIREGRTGVEAIDAGVALLYETGYLHNHVRM 143 Query: 356 ITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQG 415 AS++V V W++G ++ + LLDGDLASN+ WQW A T + F N Sbjct: 144 WIASYVVHMRKVHWKVGADWMYAHLLDGDLASNHLSWQWVAGTFSHKPYVFNADNVKKYA 203 Query: 416 KRFDPQGTFI 425 ++D T I Sbjct: 204 PKWDCSDTAI 213 >gi|297537351|ref|YP_003673120.1| DNA photolyase FAD-binding protein [Methylotenera sp. 301] gi|297256698|gb|ADI28543.1| DNA photolyase FAD-binding protein [Methylotenera sp. 301] Length = 413 Score = 84.7 bits (208), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 58/176 (32%), Positives = 89/176 (50%), Gaps = 33/176 (18%) Query: 242 TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHL-----MA 296 + LSPYL G ++ + + +K F + A + EL WR+++R + A Sbjct: 66 VTHLSPYLRHGCVTLNEAYEFIKRRF-------DASADKLVYELAWRDYWRQVWFSEGNA 118 Query: 297 FY-----PSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQ-LNTIGWMH 350 Y P V +G P +E I +QG TG P +D + + L G++H Sbjct: 119 IYSDMEPPKVAIGHA--PLSEDI------------RQGKTGLPCMDGFINEDLFATGYVH 164 Query: 351 NRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYF 406 N RM +S++V VDWR+ ++F + L+DGD+ASN+ WQW AST + S PYF Sbjct: 165 NHARMWLSSYIVHHRKVDWRLAADWFEAYLIDGDIASNHLSWQWVASTFS-SKPYF 219 >gi|46560024|gb|AAT00492.1| cryptochrome 2 [Cebus apella] Length = 166 Score = 84.7 bits (208), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 59/160 (36%), Positives = 75/160 (46%), Gaps = 13/160 (8%) Query: 239 IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGA---FSWLNELIWREFYRHLM 295 + + LSPYL G LS R + RL DL K K + S +L+WREF+ Sbjct: 13 LASPTGLSPYLRFGCLSCRLFYYRL----WDLYKKVKRNSTPPLSLFGQLLWREFFYTAA 68 Query: 296 AFYPSV--CMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRL 353 P G P +I W+++ L W +G TGFP IDA M QL GW+H+ Sbjct: 69 TNNPRFDRMEGNPI---CIQIPWDRNPEALAKWAEGKTGFPWIDAIMTQLRQEGWIHHLA 125 Query: 354 RMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGW 392 R A FL + DL V W G F LLD D + N G W Sbjct: 126 RHAVACFLTRGDLWVSWESGVRVFDDVLLDADFSVNAGSW 165 >gi|71416884|ref|XP_810407.1| DNA photolyase [Trypanosoma cruzi strain CL Brener] gi|70874932|gb|EAN88556.1| DNA photolyase, putative [Trypanosoma cruzi] Length = 341 Score = 84.3 bits (207), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 65/222 (29%), Positives = 96/222 (43%), Gaps = 30/222 (13%) Query: 240 QGTSQLSPYLSIGVLSPRQCWN--------RLKEEFVDLLIKPKSGAFSWLNELIWREFY 291 Q S++SPYLS G LSPR+ + L++ FV + + S R Y Sbjct: 6 QRLSRVSPYLSNGSLSPRRFYEMLRRYATENLRDNFVQMQYREALLRLS-------RRDY 58 Query: 292 RHLMAFYPSVCMGKPFIPWTEKIE----WNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIG 347 H M + P+ P E+ + W D ++Q W G TG P DAAMR+L T G Sbjct: 59 WHWMGLRYGTLLFFPYGPRPEQTDNIPDWRHDEKIVQKWCAGLTGVPFADAAMRELLTTG 118 Query: 348 WMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFR 407 ++ + R A L + DWR+G E+ LD D G + + + D Sbjct: 119 FVAHEGRQALAWLLTRGYGQDWRLGAEWLERCSLDYDPFLCYGNFAYFSELILDD----- 173 Query: 408 IFNPTIQ-----GKRFDPQGTFIRHWLPELNNVPTQYIHAPH 444 F ++ D G +++ WLP L+ +P YIH PH Sbjct: 174 -FGEPVRSVHWLAHHHDQTGIYVKKWLPLLSKIPPVYIHRPH 214 >gi|322817684|gb|EFZ25335.1| DNA photolyase, putative [Trypanosoma cruzi] Length = 871 Score = 84.3 bits (207), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 70/244 (28%), Positives = 106/244 (43%), Gaps = 36/244 (14%) Query: 240 QGTSQLSPYLSIGVLSPRQ------CWN--RLKEEFVDLLIKPKSGAFSWLNELIWREFY 291 Q S++SPYLS G LSPR+ C+ L++ FV + + L L R+++ Sbjct: 536 QRLSRVSPYLSNGSLSPRRFYEMLRCYTTENLRDNFVQMQYREA------LLRLSRRDYW 589 Query: 292 RHLMAFYPSVCMGKPFIPWTEKIE----WNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIG 347 H M + P+ P E+ + W D ++Q W G TG P DAAMR+L T G Sbjct: 590 -HWMGLRYGPLLFFPYGPRPEQTDNIPDWRHDEKIVQKWCAGLTGVPFADAAMRELLTTG 648 Query: 348 WMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFR 407 ++ + R A L + DWR+G E+ LD D G + + + D Sbjct: 649 FVAHEGRQALAWLLTRGYGQDWRLGAEWLERCSLDYDPFLCYGNFAYFSELILDD----- 703 Query: 408 IFNPTIQ-----GKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND------LSLNY 456 F ++ D G +++ WLP L+ +P YIH PH + L Y Sbjct: 704 -FGEPVRSVHWLAHHHDQTGIYVKKWLPLLSKIPPVYIHRPHVLTPRMQAMHGVRLGKTY 762 Query: 457 PLPI 460 P P+ Sbjct: 763 PYPL 766 >gi|157865002|ref|XP_001681209.1| DNA photolyase [Leishmania major strain Friedlin] gi|68124504|emb|CAJ02458.1| putative DNA photolyase [Leishmania major strain Friedlin] Length = 934 Score = 84.3 bits (207), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 67/244 (27%), Positives = 103/244 (42%), Gaps = 36/244 (14%) Query: 240 QGTSQLSPYLSIGVLSPRQCWNRLKE-------------EFVDLLIKPKSGAFSWLNELI 286 Q +++SPY+++G LSPR+ + L+E +F + L++ + Sbjct: 594 QKLARVSPYIALGALSPRKYYEVLREFAQANQRDAFVQQQFREGLLR------------L 641 Query: 287 WREFYRHLMAFYPSVCMGKPFIPWTEKI----EWNKDSHLLQAWKQGYTGFPIIDAAMRQ 342 R Y H M + + P E EW D ++Q W G TG P DAAMR+ Sbjct: 642 SRRDYWHWMGLRFGDRLFFSYGPHPEHTDDVPEWRHDRKVVQRWCDGLTGIPFADAAMRE 701 Query: 343 LNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDS 402 L G++ R A L + DWR+G E+ LD D G + + D Sbjct: 702 LVGTGFVAQEGRQALAWLLTRGYGQDWRLGAEWMERCSLDYDPFVCYGNYAHSCGLMLDD 761 Query: 403 VPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND------LSLNY 456 + N + D G +++ WLP+L+ VP YIH PH ++ L NY Sbjct: 762 FGE-PVRNVYYLAHQHDQTGIYVKKWLPQLSKVPPVYIHRPHVLTERMQAMHGVYLGKNY 820 Query: 457 PLPI 460 P P+ Sbjct: 821 PYPL 824 >gi|89255767|ref|YP_513129.1| deoxyribodipyrimidine photolyase [Francisella tularensis subsp. holarctica LVS] gi|89143598|emb|CAJ78782.1| deoxyribodipyrimidine photolyase [Francisella tularensis subsp. holarctica LVS] Length = 164 Score = 84.3 bits (207), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 45/125 (36%), Positives = 61/125 (48%), Gaps = 2/125 (1%) Query: 319 DSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMS 378 + +AWK G TG+P+IDA MR L W++ R+R + SF L +DWR+ Y Sbjct: 42 NQQCFEAWKTGNTGYPMIDACMRALIATRWLNFRMRAMLMSFASYHLWLDWRVTSLYLAG 101 Query: 379 QLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQ 438 D + + Q +G + RI+NP Q P FIR WLPEL NV + Sbjct: 102 LFTDYEPGIHYS--QVQMQSGTTGINSIRIYNPIKQSIDQYPNVEFIRRWLPELENVSNE 159 Query: 439 YIHAP 443 IH P Sbjct: 160 NIHTP 164 >gi|154332778|ref|XP_001562651.1| DNA photolyase [Leishmania braziliensis MHOM/BR/75/M2904] gi|134059654|emb|CAM41774.1| putative DNA photolyase [Leishmania braziliensis MHOM/BR/75/M2904] Length = 959 Score = 84.0 bits (206), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 66/246 (26%), Positives = 106/246 (43%), Gaps = 40/246 (16%) Query: 240 QGTSQLSPYLSIGVLSPRQCWNRLKE-------------EFVDLLIKPKSGAFSWLNELI 286 Q +++SPY+++G LSPR+ + L+E +F + L++ + Sbjct: 619 QKLARVSPYIALGALSPRKYYEVLREFAQANQRDAFVQQQFREGLLR------------L 666 Query: 287 WREFYRHLMAFYPSVCMGKPFIPWTEKIE----WNKDSHLLQAWKQGYTGFPIIDAAMRQ 342 R Y H M + + P E + W D ++Q W G TG P DAAMR+ Sbjct: 667 SRRDYWHWMGLRFGDRLFFSYGPHPEHTDDVPDWRHDRKVVQRWCNGLTGIPFADAAMRE 726 Query: 343 LNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDS 402 L G++ + R A L + DWR+G E+ LD D G + ++ D Sbjct: 727 LVGTGFVAHEGRQALAWLLTRGYGQDWRLGAEWMERCSLDYDPFVCYGNYAYSCGLILDD 786 Query: 403 V--PYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND------LSL 454 P ++ Q D G +++ WLP+L+ VP Y+H PH ++ L Sbjct: 787 FGEPVRSVYYLAHQ---HDQTGIYVKKWLPQLSKVPPVYVHRPHVLTERMQAMHGVYLGK 843 Query: 455 NYPLPI 460 NYP P+ Sbjct: 844 NYPYPL 849 >gi|71659265|ref|XP_821356.1| DNA photolyase [Trypanosoma cruzi strain CL Brener] gi|70886733|gb|EAN99505.1| DNA photolyase, putative [Trypanosoma cruzi] Length = 875 Score = 84.0 bits (206), Expect = 6e-14, Method: Compositional matrix adjust. Identities = 69/244 (28%), Positives = 105/244 (43%), Gaps = 36/244 (14%) Query: 240 QGTSQLSPYLSIGVLSPRQCWN--------RLKEEFVDLLIKPKSGAFSWLNELIWREFY 291 Q S++SPYLS G LSPR+ + L++ FV + + L L R+++ Sbjct: 540 QRLSRVSPYLSNGSLSPRRFYEMLRRYATENLRDNFVQMQYREA------LLRLSRRDYW 593 Query: 292 RHLMAFYPSVCMGKPFIPWTEKIE----WNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIG 347 H M + P+ P E+ + W D ++Q W G TG P DAAMR+L T G Sbjct: 594 -HWMGLRYGPLLFFPYGPRPEQTDNIPDWRHDEKIVQKWCAGLTGVPFADAAMRELLTTG 652 Query: 348 WMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFR 407 ++ + R A L + DWR+G E+ LD D G + + + D Sbjct: 653 FVAHEGRQALAWLLTRGYGQDWRLGAEWLERCSLDYDPFLCYGNFAYFSELILDD----- 707 Query: 408 IFNPTIQ-----GKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND------LSLNY 456 F ++ D G +++ WLP L+ +P YIH PH + L Y Sbjct: 708 -FGEPVRSVHWLAHHHDQTGIYVKKWLPLLSKIPPVYIHRPHVLTPRMQAMHGVRLGKTY 766 Query: 457 PLPI 460 P P+ Sbjct: 767 PYPL 770 >gi|257359518|gb|ACV53158.1| cryptochrome-like protein [Crassostrea gigas] Length = 393 Score = 83.2 bits (204), Expect = 9e-14, Method: Compositional matrix adjust. Identities = 103/405 (25%), Positives = 163/405 (40%), Gaps = 39/405 (9%) Query: 18 LRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQKSLSQKGI 77 LR+ DN +L D + VFI E + F+ L + K+L G Sbjct: 2 LRLHDNPSLIDGLSECD-RFYPVFIFDGEVAGTKTAGYNRFRFLLECLQDLDKNLKAAGT 60 Query: 78 VFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR-VICKSF 136 Q D L+ + VTK+ + E RD+L+ + L + V C Sbjct: 61 RLYCFQGQPTDI----LERLIEEWGVTKVTFEADPEPIWQERDRLVRELLDKKNVQCVEK 116 Query: 137 DDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPA-----IRLTGPVTPS 191 L P I+ + +P + NLV + + P P ++ PV+ + Sbjct: 117 VSHTLWDPYEIIEN-----NGGSPPLTFSLFNLVTSTIGPPPRPVEDPDFTDISLPVSQN 171 Query: 192 NIPRFFDYPFQAIDPMFPIGEQN------------ALHILRKFCKEKVYYYVEQRDIPAI 239 + +F + ++ EQN AL +L K + Y +P Sbjct: 172 HDKQFGIPSLEDLNVRPECEEQNKRLVEWLGGESKALELLAIRMKHEEKAYENGYVMPNQ 231 Query: 240 QGTSQLSPYLSI------GVLSPRQCWNRLKEEFVDLLIKPKSGA-FSWLNELIWREFYR 292 LSP LS+ G LS R+ + + ++F + +KP GA S +L+WRE++ Sbjct: 232 YHPDLLSPPLSLSAHLRFGCLSVRKFYWSIHDKFEE--VKPSMGAPVSLSAQLMWREYF- 288 Query: 293 HLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNR 352 + MA P I W + + W QG TG+P IDA M+QL GW+H+ Sbjct: 289 YTMAINNINYDKMETNPICLNIPWYDNPEHEEKWTQGETGYPWIDAIMKQLRYEGWVHHV 348 Query: 353 LRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAA 396 R + FL + DL ++W +G + F LLD D + G W W + Sbjct: 349 ARHAVSCFLTRGDLWLNWEVGLKVFYKYLLDADWSVCAGNWMWLS 393 >gi|149279053|ref|ZP_01885187.1| deoxyribodipyrimidine photolyase (photoreactivation) [Pedobacter sp. BAL39] gi|149230332|gb|EDM35717.1| deoxyribodipyrimidine photolyase (photoreactivation) [Pedobacter sp. BAL39] Length = 410 Score = 83.2 bits (204), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 53/165 (32%), Positives = 85/165 (51%), Gaps = 10/165 (6%) Query: 242 TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNE----LIWREFYRHLMAF 297 +S+LS +LS+G LSPR + +KE + K G+ + N+ L+WR++YR + Sbjct: 226 SSRLSGWLSLGCLSPRMVYWMVKE------AESKFGSNANFNQMLLGLLWRDYYRFMFKK 279 Query: 298 YPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMIT 357 + + +P + + +L+ WK TG+P+ID M +LN G++ R++ Sbjct: 280 HGTRFFKEPDFESDFFSSVDPANSVLKKWKTADTGYPLIDNYMTELNDTGYISYTGRLVV 339 Query: 358 ASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDS 402 A++LV L V W G YF +L+D ASN G W A G D Sbjct: 340 ATYLVHFLKVHWTNGAVYFEEKLIDYAPASNWGNWANVAGVGKDG 384 >gi|87300685|ref|ZP_01083527.1| probable deoxyribodipyrimidine photolyase [Synechococcus sp. WH 5701] gi|87284556|gb|EAQ76508.1| probable deoxyribodipyrimidine photolyase [Synechococcus sp. WH 5701] Length = 299 Score = 83.2 bits (204), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 68/207 (32%), Positives = 98/207 (47%), Gaps = 25/207 (12%) Query: 202 QAIDPMFPI--GEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQC 259 QA PI G + AL L + V Y + + S LSPY+ GV+S Q Sbjct: 55 QASGGASPIRGGSKPALAALEAL--DPVRYAASRNHLDGA--VSGLSPYIRHGVVSLAQV 110 Query: 260 WNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKD 319 + +++ P+ + L EL WR++++ L + +G W E +E K Sbjct: 111 RDLVQQRMAG---GPEPVSEKLLQELAWRDYWQRLW-----LRLGDGL--W-ENLEPLKT 159 Query: 320 SHLLQAWK--------QGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRI 371 H A+ +G TG IDA RQL+ GW+HN RM A+++V V W+ Sbjct: 160 GHPEAAYAPELPGDIDEGRTGLACIDAFARQLSDTGWLHNHARMWLAAYVVHWRRVRWQA 219 Query: 372 GEEYFMSQLLDGDLASNNGGWQWAAST 398 G +F+ LLDGD ASNN WQW AS+ Sbjct: 220 GAHWFLRHLLDGDPASNNLSWQWVASS 246 >gi|255264745|ref|ZP_05344087.1| deoxyribodipyrimidine photo-lyase family protein [Thalassiobium sp. R2A62] gi|255107080|gb|EET49754.1| deoxyribodipyrimidine photo-lyase family protein [Thalassiobium sp. R2A62] Length = 378 Score = 82.8 bits (203), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 74/253 (29%), Positives = 102/253 (40%), Gaps = 30/253 (11%) Query: 208 FPIGEQNALHILRKFCKEKVYYYVEQR--DIPAIQGTSQLSPYLSIGVLSPRQCWNRLKE 265 FP AL L F Y R D P G S LSPY+ +L+ + ++E Sbjct: 5 FPPTRAAALTRLHAFAPGAGRAYARDRNFDRPDAAGVSALSPYIRHRMLTEPEVLASVRE 64 Query: 266 EFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKI-----EWN--- 317 D + A ++ E+ WR +++ + PSV W + + WN Sbjct: 65 NHSD------ADAEKFIQEVFWRTYWKGWLELRPSV--------WDDYVVERDQAWNDVQ 110 Query: 318 KDSHLLQAWKQ---GYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEE 374 S L AW+ G TG D + L G++HN RM AS + L + W +G + Sbjct: 111 TQSGLRTAWEDACLGRTGIECFDHWAQDLAATGYLHNHSRMWFASIWIFTLRLPWSLGAD 170 Query: 375 YFMSQLLDGDLASNNGGWQWAASTGNDSVPYF-RIFNPT-IQGKRFDPQGTFIRHWLPEL 432 +F+ LLDGD ASN W+W A Y R N T G RF P+ H P Sbjct: 171 FFLRHLLDGDAASNTLSWRWVAGLQTIGKTYLARPDNITKYTGGRFRPK-ELATHAFPVD 229 Query: 433 NNVPTQYIHAPHS 445 P AP S Sbjct: 230 GTPPRARGPAPTS 242 >gi|294339500|emb|CAZ87859.1| putative Deoxyribodipyrimidine photo-lyase [Thiomonas sp. 3As] Length = 396 Score = 82.8 bits (203), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 63/174 (36%), Positives = 89/174 (51%), Gaps = 14/174 (8%) Query: 239 IQG-TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAF 297 +QG ++LSPYL+ G L R L L ++ K L EL WR F++ + Sbjct: 37 LQGHVTRLSPYLTHGFLGLRDVVQHLSMRH-GLGLQDKL-----LQELGWRAFFQQVWRH 90 Query: 298 YPS-VCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMI 356 S + + P ++ L +G TG P+ID A+R L G++HN RM Sbjct: 91 EGSGILQSQHLGPLPDRA---YAPALPADLCEGRTGVPVIDQAVRTLYATGYLHNHARMW 147 Query: 357 TASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFN 410 AS+ V V WR G ++ ++ LLDGDLASN+ WQW A TG+ S PY +FN Sbjct: 148 LASYTVHLRKVHWRAGADWMVAHLLDGDLASNHLSWQWVAGTGS-SKPY--LFN 198 >gi|27804353|gb|AAO22533.1| cryptochrome 2 [Brassica rapa subsp. pekinensis] Length = 157 Score = 82.8 bits (203), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 54/162 (33%), Positives = 86/162 (53%), Gaps = 15/162 (9%) Query: 214 NALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWN--RLKEEF--VD 269 NA +L +F ++++ Y + TS LSPYL G +S R+ + R+K+ D Sbjct: 2 NADKLLTEFIEKQLIDYAKNSKKVVGNSTSLLSPYLHFGEISVRRVFQCARMKQIIWARD 61 Query: 270 LLIKPKSGAFSWLNELIWREFYRHLMAFYP-----SVCMGKPFIPWTEKIEWNKDSHLLQ 324 + + A +L + R++ R++ +P S+ F PW +E + Sbjct: 62 KNGQGEESAVLFLRGIGLRDYSRYICFNFPFTHEQSLLSHLRFFPWDADVE------KFK 115 Query: 325 AWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLL 366 AW+QG TG+P++DA MR+L GWMHNR+R+I +SF VK LL Sbjct: 116 AWRQGRTGYPLVDAGMRELWATGWMHNRIRVIVSSFAVKFLL 157 >gi|260436077|ref|ZP_05790047.1| deoxyribodipyrimidine photo-lyase family protein [Synechococcus sp. WH 8109] gi|260413951|gb|EEX07247.1| deoxyribodipyrimidine photo-lyase family protein [Synechococcus sp. WH 8109] Length = 303 Score = 82.4 bits (202), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 64/204 (31%), Positives = 103/204 (50%), Gaps = 18/204 (8%) Query: 211 GEQNALHILRKFCKEK-----VYYYVEQRDIPAIQGT-SQLSPYLSIGVLSPRQCWNRLK 264 GE + + R+ K+K V +Y + R+ ++G + LSPY+ GVL+ + + + Sbjct: 36 GELSPIRGGREAAKDKLRRIDVRHYAKSRN--HLKGAVTGLSPYIRHGVLTLAEVRDSV- 92 Query: 265 EEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG--KPFIPWTEKIEWNKDSHL 322 F + + + G +NEL WR+F++ + +PF + + ++ L Sbjct: 93 --FARIRNRDEGGKL--INELGWRDFWQRMWLDLGDAINNDQEPFKTGHDAGAYARE--L 146 Query: 323 LQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLD 382 + G TG +D QL T GW+HN RM A++LV V W+ G ++F+ LLD Sbjct: 147 PADVRAGSTGLACMDGFRDQLVTTGWLHNHARMWMAAWLVHWRRVHWKAGADWFLEHLLD 206 Query: 383 GDLASNNGGWQWAASTGNDSVPYF 406 GD ASN+ WQW AST + PYF Sbjct: 207 GDPASNHLSWQWVASTFSHK-PYF 229 >gi|296135394|ref|YP_003642636.1| DNA photolyase FAD-binding protein [Thiomonas intermedia K12] gi|295795516|gb|ADG30306.1| DNA photolyase FAD-binding protein [Thiomonas intermedia K12] Length = 396 Score = 82.4 bits (202), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 63/178 (35%), Positives = 87/178 (48%), Gaps = 29/178 (16%) Query: 242 TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFY----RH---- 293 ++LSPYL+ G L R L L ++ K L EL WR F+ RH Sbjct: 41 VTRLSPYLTHGFLGLRDVVQHLSMRH-GLGLQDKL-----LQELGWRAFFQQVWRHEGKG 94 Query: 294 -LMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNR 352 L + +P + + P L ++G T P+ID A+R L G++HN Sbjct: 95 ILQSQHPGPLPDRAYAP-----------ALPADLREGRTDVPVIDQAVRTLYATGYLHNH 143 Query: 353 LRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFN 410 RM AS+ V V WR G ++ ++ LLDGDLASN+ WQW A TG+ S PY +FN Sbjct: 144 ARMWLASYTVHLRKVHWRAGADWMVAHLLDGDLASNHLSWQWVAGTGS-SKPY--LFN 198 >gi|156752076|gb|ABU93790.1| cryptochrome 1 [Carassius auratus] Length = 132 Score = 82.0 bits (201), Expect = 2e-13, Method: Composition-based stats. Identities = 45/115 (39%), Positives = 59/115 (51%), Gaps = 2/115 (1%) Query: 309 PWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK-DLLV 367 P +I W+K+ L W +G TGFP IDA M QL GW+H+ R A FL + DL + Sbjct: 18 PICVQIPWDKNPEALAKWAEGRTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWI 77 Query: 368 DWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQG 422 W G + F LLD D + N G W W S + +F + P G+R DP G Sbjct: 78 SWEEGMKVFEELLLDADWSVNAGSWMW-LSCSSFFQQFFHCYCPVGFGRRTDPNG 131 >gi|293321545|emb|CAZ66368.1| cryptochrome [Crateromorpha meyeri] Length = 520 Score = 82.0 bits (201), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 78/307 (25%), Positives = 133/307 (43%), Gaps = 40/307 (13%) Query: 201 FQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ---LSPYLSIGVLSPR 257 +ID F GE A+ L K + E ++P + +Q +SP + G +S R Sbjct: 196 MSSIDTKFRGGETAAILQLEKLIANRC----EPNNLPKVAQLNQYDAISPAIKFGCISVR 251 Query: 258 QCWNRLKEEFVDLLIKPKSGAFS--WLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIE 315 +NR+ + ++PK + L R++ + P++ +T + Sbjct: 252 TIYNRVSK------LEPKYNEVKNQIYDGLRNRDYCILVGGNCPNIDNQGSI--YTYILP 303 Query: 316 WNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLL-VDWRIGEE 374 W+ ++ G TG+P IDAA+ QL G++HN ++ I L DL+ + W G Sbjct: 304 WDVKQDASTRFQTGRTGYPFIDAAIAQLKREGFIHNSVKNILVRTLTCDLMWIGWHEGVR 363 Query: 375 YFMSQLLDGDLASNNGGWQWAASTG--NDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPEL 432 F LD + A W + + + + +I NP + K D G +IR +LPEL Sbjct: 364 MFYKWSLDYNAAICALSWMHGSKSTWLLEEISISQI-NPIEEAKEIDKDGDYIRKYLPEL 422 Query: 433 NNVPTQYIHAPHSWLDKND--------LSLNYPLP----IVDHKKACHHTLNQYY----- 475 + P++YIH P WL D + +YP P + + + C L +Y Sbjct: 423 KDYPSEYIHTP--WLAPLDQQIESECVIGQDYPYPNYCDVEERVQQCRKRLQIFYNIMPI 480 Query: 476 AAKKQSL 482 A K+++L Sbjct: 481 AKKRRTL 487 >gi|255607778|ref|XP_002538784.1| DNA photolyase, putative [Ricinus communis] gi|223510429|gb|EEF23599.1| DNA photolyase, putative [Ricinus communis] Length = 351 Score = 82.0 bits (201), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 67/207 (32%), Positives = 97/207 (46%), Gaps = 18/207 (8%) Query: 204 IDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRL 263 + P + G +AL L E Y + A+ G LSPYL G LS L Sbjct: 43 LSPAWQGGRASALARLSTVDAED-YARSRNQLTGAVTG---LSPYLRHGCLS-------L 91 Query: 264 KEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLL 323 E D+ + A EL +R+++R + + M P D + Sbjct: 92 PETMADVGARFGKHAHKLAAELSYRDYFRQVWYRFGEAIMQ----PMESPKVGLGDRPMP 147 Query: 324 QAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDG 383 QG+TG +D +RQL G++HN RM A+++V L VDWR ++F +QLLDG Sbjct: 148 DFIAQGFTGLVCMDEIVRQLQQHGYVHNHARMWFAAYVVHWLKVDWRQAADWFETQLLDG 207 Query: 384 DLASNNGGWQWAASTGNDSVPYFRIFN 410 D ASN+ WQW AS+ ++ PY +FN Sbjct: 208 DTASNHLSWQWIASSFSNK-PY--LFN 231 >gi|148243387|ref|YP_001228544.1| DNA photolyase FAD binding subunit [Synechococcus sp. RCC307] gi|147851697|emb|CAK29191.1| DNA photolyase FAD binding domain [Synechococcus sp. RCC307] Length = 330 Score = 81.6 bits (200), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 80/292 (27%), Positives = 126/292 (43%), Gaps = 58/292 (19%) Query: 152 LQMYKVYTPFRKALIQNLVQADLRSL---------------PVPAIRLTGPVTPSNIPRF 196 + + +++ P R + I ++Q + PVPA + + P ++PR Sbjct: 1 MPVTRIFLPVRSSSIGAVLQGGIARFSPMPRQDRRLVDQLAPVPAA--SSSLDPGDLPRQ 58 Query: 197 F------------DYPFQAIDPMFPI-GEQNALHILRKFCKEKVYYYVEQRDIPAIQG-T 242 ++P +A + PI G + A + + K Y R+ ++G Sbjct: 59 LPNREALNSLLQQEFP-EASGQLSPIRGGRKAAEM--RLSKVDPARYARSRN--HLEGMV 113 Query: 243 SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVC 302 + LSPY+ GVLS + + V I+ + +NEL WR+F++ + + Sbjct: 114 TGLSPYIRHGVLSLAEV-----RDAVFRRIRHRDEGGKLINELGWRDFWQRMW-----LE 163 Query: 303 MGKPFIPWTEKIEWNKDSH--------LLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLR 354 +G E E K H L Q G TG +D QL T GW+HN R Sbjct: 164 LGDAI---AEDQEEYKTGHPASSYSRELPQDLCDGCTGLACMDGFHEQLVTTGWLHNHAR 220 Query: 355 MITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYF 406 M A+++V V WR G ++F+ LLDGD ASN+ WQW AS + PYF Sbjct: 221 MWLAAYVVHWRRVHWRAGADWFLEHLLDGDPASNHLSWQWVASCFSHK-PYF 271 >gi|119094174|gb|ABL60996.1| deoxyribodipyrimidine photolyase [uncultured marine bacterium HF10_25F10] Length = 254 Score = 81.3 bits (199), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 69/219 (31%), Positives = 97/219 (44%), Gaps = 29/219 (13%) Query: 241 GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPS 300 ++LSPY+ GVLS + N VD PK A ++ EL WR++++ + +P Sbjct: 51 AVTRLSPYIRHGVLSLDEVRNAALASVVD----PKQ-AEKFIQELAWRDYWQRIYLEHPE 105 Query: 301 VCMGKPFIPWTEKIEWNK-------DSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRL 353 WT+ + D+ L G TG ID + L G++HN Sbjct: 106 RI-------WTDVESYKTGFDAAEYDAELPADIAAGETGIACIDQFIATLVETGYLHNHA 158 Query: 354 RMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTI 413 RM AS+ V V W+ G +F+ L+D D ASNN WQW AST ++ PY IFN Sbjct: 159 RMYLASYTVHWRRVSWQAGARFFLEHLVDADPASNNLSWQWIASTFSNK-PY--IFNLEN 215 Query: 414 QGKRFDPQ-GTFIRHWL------PELNNVPTQYIHAPHS 445 K P T RH L L+ + Y+ PH Sbjct: 216 VAKYCGPDINTIPRHNLVLDQSYEHLSELLFPYMGGPHG 254 >gi|298162590|gb|ADI59662.1| cryptochrome [Amphiprion melanopus] Length = 308 Score = 81.3 bits (199), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 62/186 (33%), Positives = 87/186 (46%), Gaps = 13/186 (6%) Query: 207 MFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS------QLSPYLSIGVLSPRQCW 260 ++P GE AL L + + K + V + P + S LSPY G LS R + Sbjct: 125 VWPGGETEALTRLERHLERKAW--VANFERPRMNANSLLASPTGLSPYPRFGCLSCRLFY 182 Query: 261 NRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK-PFIPWTEKIEWNKD 319 +L + + + K S S +L+WREF+ P C K P +I W+++ Sbjct: 183 FKLTDLYRKV-KKNSSPPLSLYGQLLWREFFYTAATNNP--CFDKMESNPICVQIPWDRN 239 Query: 320 SHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMS 378 L W +G TGFP IDA M QL GW+H+ R A FL + DL + W G + F Sbjct: 240 PEALAKWAEGRTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWISWEEGMKVFEE 299 Query: 379 QLLDGD 384 LLD D Sbjct: 300 LLLDAD 305 >gi|320102681|ref|YP_004178272.1| DNA photolyase FAD-binding protein [Isosphaera pallida ATCC 43644] gi|319749963|gb|ADV61723.1| DNA photolyase FAD-binding protein [Isosphaera pallida ATCC 43644] Length = 456 Score = 81.3 bits (199), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 54/165 (32%), Positives = 83/165 (50%), Gaps = 19/165 (11%) Query: 241 GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPS 300 ++LSPYL GVL+ + N + L+K A ++NEL WR++++ + Y Sbjct: 74 AVTRLSPYLRHGVLTLAEVRNHALK-----LVKHPVEAAKFINELGWRDYWQRV---YER 125 Query: 301 VCMGKPFIPWTEKIEWNKD-------SHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRL 353 + G W ++ + + L Q +G TG +D R+L G++HN Sbjct: 126 LGDGV----WRDREPYKTGYSARRYAAELPQEIAEGQTGMACMDEFARELRDTGYLHNHA 181 Query: 354 RMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAAST 398 RM A+++V V W+ G +F+ LLDGD ASNN WQW AST Sbjct: 182 RMWLAAYVVHWRQVRWQAGATWFLEHLLDGDPASNNLSWQWVAST 226 >gi|304391892|ref|ZP_07373834.1| deoxyribodipyrimidine photo-lyase family protein [Ahrensia sp. R2A130] gi|303296121|gb|EFL90479.1| deoxyribodipyrimidine photo-lyase family protein [Ahrensia sp. R2A130] Length = 408 Score = 80.9 bits (198), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 61/224 (27%), Positives = 98/224 (43%), Gaps = 17/224 (7%) Query: 208 FPIGEQNALHILRKFCKEKVYYYVEQRDIP-AIQG---TSQLSPYLSIGVLSPRQCWNRL 263 FP QNAL F E Y R+I ++G S+LSPY+ +++ ++ Sbjct: 7 FPATRQNALKQAENFAPEMGSNYSSNRNIDRGLEGDSTVSKLSPYIRRRLMTEQEL---- 62 Query: 264 KEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLL 323 + L + ++ E++WR +++ + P+V E+ + ++ + Sbjct: 63 --ALLALETHGAKASGKFVQEIVWRTYWKGWLEHRPTVWNDYLQDVADERDRLSSNTGIH 120 Query: 324 QAWKQ---GYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQL 380 A++Q G TG D ++L ++HN RM AS V L + W +G E+F L Sbjct: 121 HAYQQAIEGRTGIECFDVWAQELVETNYLHNHARMSFASIWVHTLRLPWSLGAEFFFHHL 180 Query: 381 LDGDLASNNGGWQWAASTGNDSVPYF---RIFNPTIQGKRFDPQ 421 LDGD ASN W+W A Y I N G RF P+ Sbjct: 181 LDGDAASNTLSWRWVAGAHTAGKTYLADPAIINRCSNG-RFSPK 223 >gi|309779655|ref|ZP_07674414.1| deoxyribodipyrimidine photolyase family protein [Ralstonia sp. 5_7_47FAA] gi|308921596|gb|EFP67234.1| deoxyribodipyrimidine photolyase family protein [Ralstonia sp. 5_7_47FAA] Length = 516 Score = 80.5 bits (197), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 70/283 (24%), Positives = 120/283 (42%), Gaps = 27/283 (9%) Query: 218 ILRKFCKEKVYYYVEQRDIP--AIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDL----- 270 +LR F E+ Y P A S+LSPYL+ G L R+ ++ + L Sbjct: 201 VLRDFLFERSRNYRGGISSPLTAPSACSRLSPYLAYGCLGMREVVQATEQRVLQLRASTD 260 Query: 271 --LIKPKSGAFSWLNELIWREFYRHLMAFYPSV---CMGKPFIPWTEKIEWNKDSHLLQA 325 + + G ++++ L W + + P++ + + + E WN D A Sbjct: 261 EDAVWQRKGLAAFVSRLHWHCHFIQKLESEPAIEFRNLHRGYDGLRESA-WNADH--FAA 317 Query: 326 WKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDL 385 G TG+P++DA + L GW++ R+R + S L + WR + Q +D + Sbjct: 318 LVAGRTGWPMVDACVAMLRETGWINFRMRAMLVSVASYPLWLHWRPVGVWLARQFVDYEP 377 Query: 386 ASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHS 445 + Q A G + R++NP Q + DP G F+R WLP L VP ++ P Sbjct: 378 GIHWSQMQMQA--GTTGINTTRVYNPIKQAQDQDPHGRFVRRWLPALRRVPDAWLLQP-- 433 Query: 446 WLDKNDLSL--------NYPLPIVDHKKACHHTLNQYYAAKKQ 480 W D+ + P+P+VD + A + +A + + Sbjct: 434 WRMPPDVQARCGVRVGEDIPVPLVDLEAATRQAKMRVHALRAR 476 >gi|318042774|ref|ZP_07974730.1| deoxyribodipyrimidine photolyase [Synechococcus sp. CB0101] Length = 340 Score = 80.5 bits (197), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 72/254 (28%), Positives = 118/254 (46%), Gaps = 42/254 (16%) Query: 178 PVPAIRLTG-----PVTPSNIPRFFDYPFQAIDP----MFPIGEQNALHILRK------- 221 PV L+G P P +PR F+ QA+ +FP G + +L R Sbjct: 30 PVATDSLSGAPLSWPEQPGELPRQFES-RQALAAELQRLFP-GAEGSLSPFRGGRHQAEQ 87 Query: 222 -FCKEKVYYYVEQRDIPAIQG-TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAF 279 + + Y + R+ + G ++LSPY+ G LS + + V ++ ++ Sbjct: 88 LLSRIQPARYAKGRNF--LDGPVTRLSPYIRQGALSLAEV-----RDAVFAKLRSRTDGE 140 Query: 280 SWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSH-------LLQAWKQGYTG 332 +NEL WR++++ L + + G W ++ E H L +G TG Sbjct: 141 KLINELGWRDYWQRL---WHQLGHGI----WRDQEELKTGHHPGAYSPELPGDIAEGRTG 193 Query: 333 FPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGW 392 +D + +L++ GW+HN RM A++LV + W+ G ++F+ LLDGD ASNN W Sbjct: 194 LACMDGFITELHSTGWLHNHARMWLAAYLVHWRRIRWQAGAQWFLRHLLDGDPASNNLSW 253 Query: 393 QWAASTGNDSVPYF 406 QW AS+ + PYF Sbjct: 254 QWVASSFSHK-PYF 266 >gi|116075573|ref|ZP_01472832.1| probable deoxyribodipyrimidine photolyase [Synechococcus sp. RS9916] gi|116066888|gb|EAU72643.1| probable deoxyribodipyrimidine photolyase [Synechococcus sp. RS9916] Length = 321 Score = 80.1 bits (196), Expect = 7e-13, Method: Compositional matrix adjust. Identities = 73/247 (29%), Positives = 113/247 (45%), Gaps = 30/247 (12%) Query: 178 PVPAIRLTGPVTPSNIPRFFDYP---FQAIDPMFPIGEQN----------ALHILRKFCK 224 PVP P P ++ R FD Q ++ FP E A H L++ + Sbjct: 5 PVPPPLAWDPA-PGDLSRDFDDRQALAQLLETQFPEAEGELSPLQGGRTAAEHQLKRV-E 62 Query: 225 EKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNE 284 K Y A+ G LSP++ GVL+ + + + + + + GA +NE Sbjct: 63 AKRYGRSRNHLDGAVTG---LSPWIRHGVLTLAEVRDAVFAQLNERHQRRDDGA-KLINE 118 Query: 285 LIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKD-----SHLLQAWKQGYTGFPIIDAA 339 L WR+F++ + + +G E + D L ++G TG +DA Sbjct: 119 LGWRDFWQRMWSD-----LGDGINDDQEALNTGHDPASYARSLPTDIREGNTGLACMDAF 173 Query: 340 MRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTG 399 R+L T GW+HN RM A+++V V W+ G ++F+ LLDGD ASN+ WQW AS+ Sbjct: 174 QRELVTHGWLHNHARMWMAAYVVHWRRVHWKAGADWFLEHLLDGDPASNHLSWQWVASSF 233 Query: 400 NDSVPYF 406 + PYF Sbjct: 234 SHK-PYF 239 >gi|33864760|ref|NP_896319.1| deoxyribodipyrimidine photolyase [Synechococcus sp. WH 8102] gi|33632283|emb|CAE06739.1| probable deoxyribodipyrimidine photolyase [Synechococcus sp. WH 8102] Length = 299 Score = 79.7 bits (195), Expect = 9e-13, Method: Compositional matrix adjust. Identities = 73/240 (30%), Positives = 110/240 (45%), Gaps = 37/240 (15%) Query: 187 PVTPSNIPRFF------------DYPFQAIDPMFPI-GEQNALHILRKFCKEKVYYYVEQ 233 P P ++PR F ++P A P+ PI G + A K + Y + Sbjct: 7 PHNPGDLPRQFASRDALEALLVEEFP-SAEGPLSPIPGGRQAAEA--KLAGVQPARYAKS 63 Query: 234 RD--IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFY 291 R+ A+ G LSPY+ GVL+ + +K+ + + K G +NEL WR+F+ Sbjct: 64 RNHLNGAVTG---LSPYIRHGVLTLAE----VKQAVFERIRKRDDGG-KLINELGWRDFW 115 Query: 292 RHLMAFYPSVCMGKPFIPWTEKIEWNKDS-----HLLQAWKQGYTGFPIIDAAMRQLNTI 346 + + + +G E + D+ L Q + G TG +D +L T Sbjct: 116 QRMW-----LDLGDGIHDDQEAFKTGHDASSYARELPQDVRDGRTGLACMDGFRDKLVTT 170 Query: 347 GWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYF 406 GW+HN RM A++LV V W G +F+ LLDGD ASN+ WQW AS+ + PYF Sbjct: 171 GWLHNHARMWMAAWLVHWRRVHWTAGANWFLEHLLDGDPASNHLSWQWVASSFSHK-PYF 229 >gi|110680064|ref|YP_683071.1| deoxyribodipyrimidine photo-lyase, putative [Roseobacter denitrificans OCh 114] gi|109456180|gb|ABG32385.1| deoxyribodipyrimidine photo-lyase, putative [Roseobacter denitrificans OCh 114] Length = 468 Score = 79.7 bits (195), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 78/291 (26%), Positives = 120/291 (41%), Gaps = 47/291 (16%) Query: 207 MFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQG----TSQLSPYLSIGVLSPRQCWNR 262 +FP + AL L F + Y +R+ G S LSPYL +++ Sbjct: 72 LFPPSHRAALERLTAFVPKAGRDYAARRNYDLGPGNHTHVSTLSPYLRCRLIT------- 124 Query: 263 LKEEFVDLLIKPKSGAFS--WLNELIWREFYRHLMAFYPSVCMGKPFIPWTE-----KIE 315 + E V+ ++ S A + ++ E+ WR +++ + P+V WT+ Sbjct: 125 -ESEVVNAVLHRHSPAAAEKFVQEVFWRTYWKGWLELRPAV--------WTQYQMALDQA 175 Query: 316 WN---KDSHLLQAWK---QGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDW 369 WN + L W+ +G TG DA R+L G++HN RM AS + L + W Sbjct: 176 WNDVQTQAGLRARWENACRGETGIHCFDAWARELVETGYLHNHARMWFASIWIFTLELPW 235 Query: 370 RIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYF-RIFN-PTIQGKRFDPQGTFIRH 427 +G ++F+ LLDGD ASN GW+W A Y R N RF P+ Sbjct: 236 ELGADFFLRHLLDGDPASNTLGWRWVAGIQTQGKTYLARTSNISKFTENRFHPKWQLAGE 295 Query: 428 WLPELNNVPTQYIHAPHS-----------WLDKNDLSLNYPLPIVDHKKAC 467 +P +P + P L + DLS + L +VD AC Sbjct: 296 AIPRHAPLPPEPRSLPAGDAFDPALRTGFLLHEEDLSPGFFLNMVD-PHAC 345 >gi|254486393|ref|ZP_05099598.1| deoxyribodipyrimidine photo-lyase, putative [Roseobacter sp. GAI101] gi|214043262|gb|EEB83900.1| deoxyribodipyrimidine photo-lyase, putative [Roseobacter sp. GAI101] Length = 403 Score = 79.3 bits (194), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 60/201 (29%), Positives = 89/201 (44%), Gaps = 17/201 (8%) Query: 215 ALHILRKFCKEKVYYYVEQRDIPAIQ----GTSQLSPYLSIGVLSPRQCWNRLKEEFVDL 270 L LR F + +Y E+R+ S LSPYL G++S + E + Sbjct: 15 GLERLRNFAPDAGRHYGERRNYLGTAKNPGAVSALSPYLRTGLVS--------QSEVLRT 66 Query: 271 LIKPKSG--AFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQ 328 ++ S A ++ E++WR +++ +A PSV S L Q W+ Sbjct: 67 VLDQHSAKDADRYIAEVLWRSYWQGWLALRPSVWDAYQADLKRLHNAVQTQSGLRQRWEN 126 Query: 329 ---GYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDL 385 G TG DA +L G++HN RM AS V L + W++G ++F+ LLDG Sbjct: 127 ACLGQTGIAPFDAWANELAHSGYLHNHARMWFASIWVHTLELPWQLGADFFLRHLLDGCP 186 Query: 386 ASNNGGWQWAASTGNDSVPYF 406 ASN GW+W A PY Sbjct: 187 ASNTLGWKWVAGIQTIGKPYL 207 >gi|293605132|ref|ZP_06687523.1| deoxyribodipyrimidine photolyase [Achromobacter piechaudii ATCC 43553] gi|292816456|gb|EFF75546.1| deoxyribodipyrimidine photolyase [Achromobacter piechaudii ATCC 43553] Length = 115 Score = 79.3 bits (194), Expect = 1e-12, Method: Composition-based stats. Identities = 40/110 (36%), Positives = 66/110 (60%), Gaps = 2/110 (1%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 L+WLR DLR+ DN AL AA N V A+F+A P+QWRQHG + + F +L ++ + Sbjct: 4 LLWLRTDLRMHDNPALAAAREN--GTVTALFLAAPDQWRQHGDAPAKVDFWLRNLHELSR 61 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120 L ++GI + +++ + E + ++C +T++ N ++ INE RRD Sbjct: 62 DLGERGIPLKLLTVADWSKAPEAIAAFCQAHAITQVHANTEWAINERRRD 111 >gi|159043938|ref|YP_001532732.1| putative deoxyribodipyrimidine photo-lyase [Dinoroseobacter shibae DFL 12] gi|157911698|gb|ABV93131.1| putative deoxyribodipyrimidine photo-lyase [Dinoroseobacter shibae DFL 12] Length = 405 Score = 79.3 bits (194), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 61/201 (30%), Positives = 90/201 (44%), Gaps = 15/201 (7%) Query: 205 DPMFPIGEQNALHILRKFCKEKVYYYVEQR--DIPAIQG---TSQLSPYLSIGVLSPRQC 259 D FP L LR F + Y R D+P QG SQLSPYL +++ + Sbjct: 4 DTAFPPTRDAGLARLRDFLPKAAGDYTRGRNYDLPE-QGHPHVSQLSPYLRHRLVTEGEV 62 Query: 260 WNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKD 319 + + F A ++ E+ WR +++ + PSV M + + Sbjct: 63 LDAVLGRFS------LKSAEKFVQEVYWRTYWKGWLERRPSVWMAYKGGLSQALDRLHVE 116 Query: 320 SHLLQAWK---QGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYF 376 S W+ +G TG DA R+L + G+MHN RM AS + L + W +G ++F Sbjct: 117 SGFRAEWEAACKGETGIDGFDAWARELVSTGYMHNHARMWFASIWIFTLRLPWELGADFF 176 Query: 377 MSQLLDGDLASNNGGWQWAAS 397 + LLDGD ASN W+W A Sbjct: 177 LRHLLDGDAASNTLSWRWVAG 197 >gi|307101791|gb|EFN50420.1| hypothetical protein CHLNCDRAFT_29124 [Chlorella variabilis] Length = 92 Score = 79.0 bits (193), Expect = 2e-12, Method: Composition-based stats. Identities = 34/84 (40%), Positives = 55/84 (65%), Gaps = 1/84 (1%) Query: 288 REFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIG 347 R + R+L +P + + + W D L +AW+QG TG+P++DAAMR++ G Sbjct: 1 RRYSRYLSFHFP-FTHERSLLEHLRAVPWRFDQRLFKAWRQGRTGYPLVDAAMREVWGTG 59 Query: 348 WMHNRLRMITASFLVKDLLVDWRI 371 WMHNR+R++ ASF+VK+LL+ W++ Sbjct: 60 WMHNRMRVVAASFMVKNLLLPWQV 83 >gi|330825550|ref|YP_004388853.1| DNA photolyase FAD-binding protein [Alicycliphilus denitrificans K601] gi|329310922|gb|AEB85337.1| DNA photolyase FAD-binding protein [Alicycliphilus denitrificans K601] Length = 516 Score = 78.2 bits (191), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 60/243 (24%), Positives = 100/243 (41%), Gaps = 13/243 (5%) Query: 211 GEQNALHILRKFCKEKVYYYVEQRDIP--AIQGTSQLSPYLSIGVLSPRQCWNRLKEEFV 268 G +L F + +Y P A S+LSPYL++G L R+ + V Sbjct: 194 GRTPGQQVLHDFLHMRGAWYRGGISSPLTAPTACSRLSPYLALGCLGMREVVQATQLRQV 253 Query: 269 DL-------LIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSH 321 L + + G ++++ + W + + P + + E+ + Sbjct: 254 QLKSADDPRAARLRQGLAAFMSRMHWHCHFIQKLESEPELEWRNLHRGYDGLREYAWNPA 313 Query: 322 LLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLL 381 A + G TG+PI+DA + L GW++ R+R + S L + WR + Q L Sbjct: 314 HFDALQAGQTGWPIVDACVAMLRETGWVNFRMRAMLVSVAAYPLWLHWRPVGLWLARQFL 373 Query: 382 DGDLASNNGGW-QWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYI 440 D + + W Q G + R++NP Q + DP G F+R WLP L VP ++ Sbjct: 374 DYEPGIH---WSQMQMQAGTTGINTTRVYNPIKQAQDHDPHGVFVRRWLPALRRVPDAWL 430 Query: 441 HAP 443 P Sbjct: 431 FEP 433 >gi|78211770|ref|YP_380549.1| deoxyribodipyrimidine photo-lyase family protein [Synechococcus sp. CC9605] gi|78196229|gb|ABB33994.1| probable deoxyribodipyrimidine photolyase [Synechococcus sp. CC9605] Length = 303 Score = 77.8 bits (190), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 55/170 (32%), Positives = 84/170 (49%), Gaps = 16/170 (9%) Query: 242 TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSV 301 + LSPY+ GVL+ + + + E I+ + +NEL WR+F++ + + Sbjct: 71 VTGLSPYIRHGVLTLAEVRDSVFER-----IRNRDEGGKLINELGWRDFWQRMW-----L 120 Query: 302 CMGKPFIPWTEKIEWNKDS-----HLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMI 356 +G E + D+ L + G TG +D QL + GW+HN RM Sbjct: 121 DLGDGIHDDQEPFKTGHDAGAYAQELPADVRAGTTGLACMDGFRDQLVSTGWLHNHARMW 180 Query: 357 TASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYF 406 A++LV V W+ G ++F+ LLDGD ASN+ WQW AST + PYF Sbjct: 181 MAAWLVHWRRVHWKAGADWFLEHLLDGDPASNHLSWQWVASTFSHK-PYF 229 >gi|77964002|gb|ABB13342.1| cryptochrome 1a [Hordeum vulgare subsp. vulgare] Length = 304 Score = 77.8 bits (190), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 42/93 (45%), Positives = 56/93 (60%), Gaps = 6/93 (6%) Query: 380 LLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQY 439 LLD DL S+ GWQ+ + + D RI NP +G +FDP G ++R WLPEL +PT++ Sbjct: 3 LLDADLESDALGWQYISGSLPDGRELDRIDNPQFEGYKFDPYGEYVRRWLPELARLPTEW 62 Query: 440 IH----APHSWLDKNDLSL--NYPLPIVDHKKA 466 IH AP S L + L NYPLPIV+ +A Sbjct: 63 IHHPWDAPESVLQAAGIELGSNYPLPIVELDEA 95 >gi|22298095|ref|NP_681342.1| putative deoxyribodipyrimidine [Thermosynechococcus elongatus BP-1] gi|22294273|dbj|BAC08104.1| tll0552 [Thermosynechococcus elongatus BP-1] Length = 276 Score = 77.8 bits (190), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 54/167 (32%), Positives = 84/167 (50%), Gaps = 10/167 (5%) Query: 242 TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSV 301 + LS YL GV+S +R+++ L+ S A + L +L WR++++ L A + Sbjct: 76 VTGLSAYLRHGVISLAAVRDRVRQ-----LVDDPSEAEALLQQLAWRDYWQRLYAHWGDR 130 Query: 302 CMG--KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITAS 359 +P+ +++ D L A TG +DA L G++HN R+ A+ Sbjct: 131 LWQDIEPYKTGWSAVDYATD--LPAALVAAETGLACMDAFSSDLQRTGYLHNHARLWLAA 188 Query: 360 FLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYF 406 ++V V W+ G +F+ LLDGD ASNN WQW AST + PYF Sbjct: 189 YVVHWCRVRWQAGAAWFLQHLLDGDPASNNLSWQWVASTFSHK-PYF 234 >gi|88808065|ref|ZP_01123576.1| probable deoxyribodipyrimidine photolyase [Synechococcus sp. WH 7805] gi|88788104|gb|EAR19260.1| probable deoxyribodipyrimidine photolyase [Synechococcus sp. WH 7805] Length = 309 Score = 77.8 bits (190), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 69/243 (28%), Positives = 115/243 (47%), Gaps = 33/243 (13%) Query: 177 LPVPAIR-LTGPVTPSNIPRFF------------DYPFQAIDPMFPI--GEQNALHILRK 221 LP+P I L+ P P ++PR ++P A P+ I G Q A L++ Sbjct: 3 LPLPPITPLSWPEQPGDLPRDLPDRDALDRRLANEFP-SAQGPLSGIQGGRQAAESQLQR 61 Query: 222 FCKEKVYYYVEQRDIPAIQGT-SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFS 280 ++ Y R+ ++G ++LSP++ GVL+ + + + D G+ Sbjct: 62 MEAKR---YGRSRN--HLKGAVTRLSPWIRHGVLTLAEIREAVFAQLRDRGQGRDDGS-K 115 Query: 281 WLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKD-----SHLLQAWKQGYTGFPI 335 +NEL WR+F++ + +G E+++ D L ++G TG Sbjct: 116 LINELGWRDFWQRMWG-----DLGDGIHESQEELKTGHDPSSYSRELPDDVREGRTGLAC 170 Query: 336 IDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWA 395 +D +L + GW+HN RM A++LV V W+ G ++F+ LLDGD ASN+ WQW Sbjct: 171 MDGFSEELVSSGWLHNHARMWMAAYLVHWRRVHWKAGADWFLEHLLDGDPASNHLSWQWV 230 Query: 396 AST 398 AS+ Sbjct: 231 ASS 233 >gi|148654199|ref|YP_001274404.1| deoxyribodipyrimidine photolyase-like protein [Roseiflexus sp. RS-1] gi|148566309|gb|ABQ88454.1| Deoxyribodipyrimidine photolyase-like protein [Roseiflexus sp. RS-1] Length = 270 Score = 77.4 bits (189), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 57/172 (33%), Positives = 87/172 (50%), Gaps = 12/172 (6%) Query: 241 GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPS 300 + LSPY+ GVLS + +++ + + +P A ++EL WR++++ L Sbjct: 65 AVTHLSPYIRYGVLSLAE----VRDAALSRVRRPADAA-KLVSELGWRDYWQRLYERLGD 119 Query: 301 VCM--GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITA 358 +P+ E+ + L +G TG +DA R L + G++HN RM A Sbjct: 120 DVWRDQEPYKTGYRADEYA--AELPDDIIEGRTGLACMDAFSRDLRSTGYLHNHARMWLA 177 Query: 359 SFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFN 410 S++V V W+ G +F+ LLDGD ASNN WQW AST + PY IFN Sbjct: 178 SYVVHWRRVAWQAGARWFLEHLLDGDPASNNLSWQWVASTFSHK-PY--IFN 226 >gi|294084366|ref|YP_003551124.1| hypothetical protein SAR116_0797 [Candidatus Puniceispirillum marinum IMCC1322] gi|292663939|gb|ADE39040.1| hypothetical protein SAR116_0797 [Candidatus Puniceispirillum marinum IMCC1322] Length = 267 Score = 77.4 bits (189), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 53/172 (30%), Positives = 87/172 (50%), Gaps = 20/172 (11%) Query: 242 TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSV 301 S+LSPY+ G++S N ++ + + +P+ ++ EL WR++++ Sbjct: 65 VSRLSPYIRHGIIS----LNDVRNHALSISGEPQQTE-KFIQELAWRDYWQRRY------ 113 Query: 302 CMGKPFIPWTE----KIEWNKDSH---LLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLR 354 P W + K + D + L + G TG +ID + +L T G++HN R Sbjct: 114 -RQNPHDIWHDIEAYKTGFTADDYAETLPADIEAGETGVAVIDHFIHELCTTGYLHNHAR 172 Query: 355 MITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYF 406 M A+++V + W+ G ++F+ LLDGD ASNN WQW AST + PYF Sbjct: 173 MYVAAYIVHWRRIKWQAGAQWFLHHLLDGDPASNNLSWQWVASTFANK-PYF 223 >gi|317968593|ref|ZP_07969983.1| deoxyribodipyrimidine photolyase [Synechococcus sp. CB0205] Length = 302 Score = 77.4 bits (189), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 69/240 (28%), Positives = 113/240 (47%), Gaps = 43/240 (17%) Query: 190 PSNIPRFFD------------YPFQAIDPMFPI--GEQNALHILRKFCKEKVYYYVEQRD 235 P ++PR F +P +A + PI G A +LR+ E+ Y + R+ Sbjct: 9 PGDLPRQFSDRSALECTLQQLFP-EASGSLSPIQGGRSQADALLRRVQPER---YAKARN 64 Query: 236 IPAIQG-TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHL 294 + G ++LSPY+ G +S + + V K + + +NEL WR++++ L Sbjct: 65 F--LSGPVTRLSPYIRHGAISLAEV-----RDAVFARTKQRQASEKLINELGWRDYWQRL 117 Query: 295 MAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWK--------QGYTGFPIIDAAMRQLNTI 346 +G W+++ E K H A+ +G TG +D ++L Sbjct: 118 WE-----QLGDGI--WSDQ-EPLKTGHHPGAYAPELPADITEGRTGLACMDGFSQELQQT 169 Query: 347 GWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYF 406 GW+HN RM A+++V + W+ G ++F+ LLDGD ASNN WQW AS+ + PYF Sbjct: 170 GWLHNHARMWLAAYVVHWRRIRWQAGAQWFLRHLLDGDPASNNLSWQWVASSFSHK-PYF 228 >gi|87123060|ref|ZP_01078911.1| probable deoxyribodipyrimidine photolyase [Synechococcus sp. RS9917] gi|86168780|gb|EAQ70036.1| probable deoxyribodipyrimidine photolyase [Synechococcus sp. RS9917] Length = 313 Score = 77.4 bits (189), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 55/172 (31%), Positives = 88/172 (51%), Gaps = 16/172 (9%) Query: 242 TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKS--GAFSWLNELIWREFYRHLMAFYP 299 ++LSP++ GVLS + + + F+ L + +S +NEL WR+F++ + Sbjct: 98 VTRLSPWIRHGVLSLAEVRDAV---FLQLQKRGQSRDDGAKLINELGWRDFWQRMWQ--- 151 Query: 300 SVCMGKPFIPWTEKIEWNKDS-----HLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLR 354 +G E+++ D L + + G TG IDA +L GW+HN R Sbjct: 152 --ALGDRIHDSQEELKTGHDPASYRVELPEDIRDGRTGLACIDAFRAELVHSGWLHNHAR 209 Query: 355 MITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYF 406 M A+++V V W+ G ++F+ LLDGD ASN+ WQW AS+ + PYF Sbjct: 210 MWLAAYVVHWRRVHWKAGADWFLEHLLDGDPASNHLSWQWVASSFSHK-PYF 260 >gi|113954353|ref|YP_729493.1| blue light photoreceptor cryptochrome [Synechococcus sp. CC9311] gi|113881704|gb|ABI46662.1| blue light photoreceptor cryptochrome [Synechococcus sp. CC9311] Length = 315 Score = 77.0 bits (188), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 50/164 (30%), Positives = 80/164 (48%), Gaps = 2/164 (1%) Query: 243 SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVC 302 ++LSPY+ G+L+ + + + + + +G +NEL WR+F++ + Sbjct: 78 TRLSPYIRHGILTLAEVRDAVFSQLKQTSQRRDNGE-KLINELGWRDFWQRMWLDLGDRI 136 Query: 303 MGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLV 362 T + L ++G T +D +L T GW+HN RM A++LV Sbjct: 137 HDDQEDHKTGHAASEYEQGLPDDIREGRTNLACMDGFRNELVTQGWLHNHARMWMAAYLV 196 Query: 363 KDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYF 406 V WR+G ++F+ LLDGD ASN+ WQW AS + PYF Sbjct: 197 HWRRVHWRVGADWFLEHLLDGDPASNHLSWQWVASCFSHK-PYF 239 >gi|67906774|gb|AAY82837.1| predicted deoxyribodipyrimidine photolyase [uncultured bacterium MedeBAC46A06] Length = 287 Score = 76.3 bits (186), Expect = 9e-12, Method: Compositional matrix adjust. Identities = 58/196 (29%), Positives = 91/196 (46%), Gaps = 18/196 (9%) Query: 241 GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPS 300 ++LSPY+ G+LS + ++ + ++ PK A ++ EL WR++++ L +P Sbjct: 84 AVTRLSPYIRHGILS----LDEVRNAALAMVDDPKQ-AEKFIQELAWRDYWQRLYLAHPE 138 Query: 301 VCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASF 360 T + D L G TG ID + L G++HN RM A++ Sbjct: 139 WIWADVESYKTGFDSSDYDPDLPDDIAAGETGVACIDQFIATLVETGYLHNHARMYLAAY 198 Query: 361 LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDP 420 V V W+ G +F+ L+D D ASNN WQW AST ++ PY IFN Sbjct: 199 TVHWRRVSWQAGARWFLGHLIDADPASNNLSWQWIASTFSNK-PY--IFN---------- 245 Query: 421 QGTFIRHWLPELNNVP 436 ++ PE+N +P Sbjct: 246 LENVAKYSGPEINTIP 261 >gi|77964000|gb|ABB13341.1| cryptochrome 1a [Hordeum vulgare subsp. vulgare] Length = 301 Score = 75.9 bits (185), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 41/92 (44%), Positives = 55/92 (59%), Gaps = 6/92 (6%) Query: 381 LDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYI 440 LD DL S+ GWQ+ + + D RI NP +G +FDP G ++R WLPEL +PT++I Sbjct: 1 LDADLESDALGWQYISGSLPDGRELDRIDNPQFEGYKFDPYGEYVRRWLPELARLPTEWI 60 Query: 441 H----APHSWLDKNDLSL--NYPLPIVDHKKA 466 H AP S L + L NYPLPIV+ +A Sbjct: 61 HHPWDAPESVLQAAGIELGSNYPLPIVELDEA 92 >gi|56752236|ref|YP_172937.1| deoxyribodipyrimidine photolyase [Synechococcus elongatus PCC 6301] gi|56687195|dbj|BAD80417.1| similar to deoxyribodipyrimidine photolyase [Synechococcus elongatus PCC 6301] Length = 305 Score = 75.9 bits (185), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 50/171 (29%), Positives = 78/171 (45%), Gaps = 31/171 (18%) Query: 241 GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPS 300 ++LSPY+ GVLS +R+ + I+ +S + EL WR++++ + Sbjct: 83 AVTRLSPYIRHGVLSLATVRDRVLAQ-----IRQRSDGEKLITELAWRDYWQRI------ 131 Query: 301 VCMGKPFIPWTEKIEWNKDSHLLQAW-------------KQGYTGFPIIDAAMRQLNTIG 347 + W ++I W W + TG +D R+L G Sbjct: 132 ------YWEWGDRI-WRDREPYKTGWDSQQYSEALPPDLQAAETGLACMDRFSRELKETG 184 Query: 348 WMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAAST 398 ++HN RM A++LV + W+ G +F+ LLDGD ASNN WQW AST Sbjct: 185 YLHNHARMWMAAYLVHWRRIRWQAGARWFLQHLLDGDPASNNLSWQWVAST 235 >gi|254442576|ref|ZP_05056052.1| hypothetical protein VDG1235_809 [Verrucomicrobiae bacterium DG1235] gi|198256884|gb|EDY81192.1| hypothetical protein VDG1235_809 [Verrucomicrobiae bacterium DG1235] Length = 423 Score = 75.5 bits (184), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 69/261 (26%), Positives = 109/261 (41%), Gaps = 44/261 (16%) Query: 215 ALHILRKFCKEKVYYYVEQRDIPAIQG----TSQLSPYLSIGVLSPRQCWNRLKEEFVDL 270 AL+ L+ F Y R+ G SQLSPY+ G++S +EE V Sbjct: 24 ALNRLKDFVVRAGSDYRANRNHDGGAGQHVYVSQLSPYIRNGLIS--------EEEVVAT 75 Query: 271 LIKPKSGAFS--WLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQ 328 ++K + A + +L E+ WR +++ + P + WT + +D +L+ Sbjct: 76 ILKSHTFAEAEKFLQEVFWRVYWKGYLENRP--------VLWTR---YREDLEILKNKAA 124 Query: 329 GYTGFPIIDAAM----------RQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMS 378 Y +P D+A ++L G++HN RM AS + L + W++G ++F+ Sbjct: 125 DYQDYPRADSASTGIKCFDTWSQELQETGYLHNHTRMWFASIWIFTLKLPWQLGADFFLR 184 Query: 379 QLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQ 438 LLDGD ASN W+W A Y R F + P++N + TQ Sbjct: 185 HLLDGDPASNTLSWRWVAGLHTKGKNYL---------ARSSNIAKFTANRFPDVNGLATQ 235 Query: 439 YIHAPHSWLDKNDLSLNYPLP 459 S D S PLP Sbjct: 236 ADAIEESHPDSPITSTELPLP 256 >gi|218198693|gb|EEC81120.1| hypothetical protein OsI_23997 [Oryza sativa Indica Group] Length = 133 Score = 75.5 bits (184), Expect = 2e-11, Method: Composition-based stats. Identities = 33/64 (51%), Positives = 45/64 (70%) Query: 333 FPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGW 392 +P+IDA M++L G+M NR R I SFLV+D+ +DWR+G E+F + LLD D ASN G W Sbjct: 69 YPLIDANMKELLATGFMSNRGRQIVCSFLVRDMGIDWRMGAEWFETCLLDYDPASNYGNW 128 Query: 393 QWAA 396 + A Sbjct: 129 TYGA 132 >gi|81300676|ref|YP_400884.1| deoxyribodipyrimidine photo-lyase family protein [Synechococcus elongatus PCC 7942] gi|81169557|gb|ABB57897.1| Deoxyribodipyrimidine photo-lyase family protein [Synechococcus elongatus PCC 7942] Length = 293 Score = 75.5 bits (184), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 50/171 (29%), Positives = 78/171 (45%), Gaps = 31/171 (18%) Query: 241 GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPS 300 ++LSPY+ GVLS +R+ + I+ +S + EL WR++++ + Sbjct: 71 AVTRLSPYIRHGVLSLATVRDRVLAQ-----IRQRSDGEKLITELAWRDYWQRI------ 119 Query: 301 VCMGKPFIPWTEKIEWNKDSHLLQAW-------------KQGYTGFPIIDAAMRQLNTIG 347 + W ++I W W + TG +D R+L G Sbjct: 120 ------YWEWGDRI-WRDREPYKTGWDSQQYSEALPPDLQAAETGLACMDRFSRELKETG 172 Query: 348 WMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAAST 398 ++HN RM A++LV + W+ G +F+ LLDGD ASNN WQW AST Sbjct: 173 YLHNHARMWMAAYLVHWRRIRWQAGARWFLQHLLDGDPASNNLSWQWVAST 223 >gi|78183829|ref|YP_376263.1| deoxyribodipyrimidine photolyase [Synechococcus sp. CC9902] gi|78168123|gb|ABB25220.1| Deoxyribodipyrimidine photo-lyase family protein [Synechococcus sp. CC9902] Length = 298 Score = 75.5 bits (184), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 62/208 (29%), Positives = 97/208 (46%), Gaps = 14/208 (6%) Query: 202 QAIDPMFPI--GEQNALHILRKFCKEKVYYYVEQRDIPAIQGT-SQLSPYLSIGVLSPRQ 258 +A + PI G + A +RK V Y R+ + G ++LSPY+ GV + + Sbjct: 33 EASGAISPIRGGRRAAEKQIRKM---DVKRYARSRN--HVNGAVTRLSPYIRHGVFTLAE 87 Query: 259 CWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNK 318 +++ + K G+ +NEL WR+F++ + T + Sbjct: 88 ----VRDAVFQGISKRDDGS-KLINELGWRDFWQRMWQDLGDRIDDDQEAFKTGHSAASY 142 Query: 319 DSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMS 378 L + G TG +D +L + GW+HN RM A++LV V W+ G ++F+ Sbjct: 143 SRELPDDVRDGCTGLACMDGFREELVSTGWLHNHARMWMAAWLVHWRHVHWKAGADWFLE 202 Query: 379 QLLDGDLASNNGGWQWAASTGNDSVPYF 406 LLDGD ASN+ WQW AST + PYF Sbjct: 203 HLLDGDPASNHLSWQWIASTFSHK-PYF 229 >gi|148238603|ref|YP_001223990.1| FAD binding domain-containing protein [Synechococcus sp. WH 7803] gi|147847142|emb|CAK22693.1| FAD binding domain of DNA photolyase [Synechococcus sp. WH 7803] Length = 340 Score = 74.7 bits (182), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 52/170 (30%), Positives = 84/170 (49%), Gaps = 12/170 (7%) Query: 242 TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSV 301 ++LSP++ GVL+ + + + D G +NEL WR+F++ + + Sbjct: 109 VTRLSPWIRHGVLTLAEIREVVFAQLRDRGQGRDDGG-KLINELGWRDFWQRMWSD---- 163 Query: 302 CMGKPFIPWTEKIEWNKD-----SHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMI 356 +G E+++ D L ++G TG +D L + GW+HN RM Sbjct: 164 -LGDSIHESQEELKTGHDPASYSRELPDDVREGRTGLACMDGFRDDLVSSGWLHNHARMW 222 Query: 357 TASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYF 406 A++LV V W+ G ++F+ LLDGD ASN+ WQW AS+ + PYF Sbjct: 223 MAAYLVHWRRVHWKAGADWFLEHLLDGDPASNHLSWQWVASSFSHK-PYF 271 >gi|224005941|ref|XP_002291931.1| predicted protein [Thalassiosira pseudonana CCMP1335] gi|220972450|gb|EED90782.1| predicted protein [Thalassiosira pseudonana CCMP1335] Length = 485 Score = 74.7 bits (182), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 50/174 (28%), Positives = 81/174 (46%), Gaps = 28/174 (16%) Query: 243 SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVC 302 ++LSPYL GVLSP++ K G +L+WR++ + Sbjct: 223 TKLSPYLRWGVLSPQRA--------------AKCGVRR--RDLLWRDWSHLCYGLVGPLR 266 Query: 303 MGKPFIPWT----------EKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNR 352 G + + +K+ + L + W G TG+ ++DA MRQL GWM + Sbjct: 267 RGDAVLEYMNKACSDDTSDDKLNADNKDELFRLWCVGNTGYELVDAGMRQLWAEGWMSRK 326 Query: 353 LRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYF 406 R++ A+ LV+ + V W++G ++F L+D D A N WQ A G D P++ Sbjct: 327 ARLLAAACLVEGMGVSWQLGRDWFAYTLIDHDPAINEMMWQNAGLCGVD--PFY 378 >gi|300712647|ref|YP_003738460.1| deoxyribodipyrimidine photolyase [Halalkalicoccus jeotgali B3] gi|299126331|gb|ADJ16669.1| deoxyribodipyrimidine photolyase [Halalkalicoccus jeotgali B3] Length = 196 Score = 74.3 bits (181), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 49/145 (33%), Positives = 68/145 (46%), Gaps = 12/145 (8%) Query: 340 MRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTG 399 MR L G+++ R+R + ASF L WRIG ++ L+D D A N QW G Sbjct: 1 MRALTETGFLNFRMRAMVASFFSYILKQWWRIGADFMYYHLIDADPAINYA--QWQMQCG 58 Query: 400 NDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAP---------HSWLDKN 450 RI+NP Q + DP G FIR ++PEL N+ T ++ P S + Sbjct: 59 LVGCHPNRIYNPRKQVRENDPAGEFIREYVPELQNLSTTFLERPEKTPLHVQEQSGVTIG 118 Query: 451 DLS-LNYPLPIVDHKKACHHTLNQY 474 D S YP PIVD ++ Q+ Sbjct: 119 DTSDAVYPYPIVDFEREATLAREQF 143 >gi|116071562|ref|ZP_01468830.1| probable deoxyribodipyrimidine photolyase [Synechococcus sp. BL107] gi|116065185|gb|EAU70943.1| probable deoxyribodipyrimidine photolyase [Synechococcus sp. BL107] Length = 298 Score = 74.3 bits (181), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 51/164 (31%), Positives = 77/164 (46%), Gaps = 6/164 (3%) Query: 243 SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVC 302 ++LSPY+ GV + + + V I + +NEL WR+F++ + Sbjct: 72 TRLSPYIRHGVFTLAEV-----RDAVFRGISKRDDGSKLINELGWRDFWQRMWQNLGDRI 126 Query: 303 MGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLV 362 T + L + G TG +D +L + GW+HN RM A++LV Sbjct: 127 NDDQEELKTGHSAASYSRELPDDVRDGCTGLACMDGFRNELVSTGWLHNHARMWMAAWLV 186 Query: 363 KDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYF 406 V W+ G ++F+ LLDGD ASN+ WQW AST + PYF Sbjct: 187 HWRHVHWKAGADWFLEHLLDGDPASNHLSWQWIASTFSHK-PYF 229 >gi|254449813|ref|ZP_05063250.1| conserved hypothetical protein [Octadecabacter antarcticus 238] gi|198264219|gb|EDY88489.1| conserved hypothetical protein [Octadecabacter antarcticus 238] Length = 405 Score = 74.3 bits (181), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 53/182 (29%), Positives = 84/182 (46%), Gaps = 8/182 (4%) Query: 248 YLSIGVLSPRQCWNRLKEEFV---DLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304 + ++ VLSP C L E V L + A +++ E++WR +++ + P V Sbjct: 39 HTAVSVLSPYICRRLLCEREVVAAALAVHGPDDARAFIEEVVWRGYFKGWLERRPQVWAS 98 Query: 305 KPFIPWTEKIEWNKDSHL---LQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFL 361 + +D L ++ + G +G D +L G++HN RM AS Sbjct: 99 YVSGLNADLESLKRDRQLRRDVELAETGQSGLGYFDTWAHELVNTGYLHNHARMWFASIW 158 Query: 362 VKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPY-FRIFN-PTIQGKRFD 419 + L + WR+G ++F LLDGD A+N W+WAA PY R N T G RF+ Sbjct: 159 IFTLGLPWRLGADFFYRHLLDGDAAANTLNWRWAAGLHTRGKPYPARAENIATFTGGRFN 218 Query: 420 PQ 421 P+ Sbjct: 219 PR 220 >gi|213158207|ref|YP_002320258.1| deoxyribodipyrimidine photo-lyase [Acinetobacter baumannii AB0057] gi|213057367|gb|ACJ42269.1| deoxyribodipyrimidine photo-lyase [Acinetobacter baumannii AB0057] Length = 193 Score = 73.9 bits (180), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 50/172 (29%), Positives = 85/172 (49%), Gaps = 4/172 (2%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 L+W R DLRI D+ AL+ A + + + I +PEQW+QH + + F L +QK Sbjct: 7 LIWFRQDLRIHDHAALWHASQQGPS--LGLVILSPEQWKQHADAPIKISFYLRQLRTLQK 64 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL-QH 129 LS I + + ++ + + + ++ N + +NE++RDK ++ L +H Sbjct: 65 ELSALHIPLVIQVIPYWKEIATFISDFSKKYNIENVYANIEIGVNELKRDKTVQDYLNRH 124 Query: 130 RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADL-RSLPVP 180 F D + P SI N + Q Y+V++ F+KA L + L + PVP Sbjct: 125 GKELFLFHDRTIFPLRSIRNQSQQPYQVFSAFKKACYTKLDTSGLSQCYPVP 176 >gi|313217172|emb|CBY38333.1| unnamed protein product [Oikopleura dioica] Length = 571 Score = 73.9 bits (180), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 70/261 (26%), Positives = 114/261 (43%), Gaps = 37/261 (14%) Query: 229 YYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCW---NRLKEEFVDLLIKPKSGAFSWLNEL 285 +++ R+ + ++PY+ G LS RQ + NR+ EE I+ + Sbjct: 287 HWLINRETQSTPDLRAVTPYIVQGCLSVRQVYHDVNRVYEE-----IQGEKATLKLHFAA 341 Query: 286 IWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNT 345 + R+F +L P + ++ D ++ W +G TGFP +DA MRQ T Sbjct: 342 LHRDFLYNLAVV--------PNDDLNLDVSFDCDEARIRTWLEGNTGFPWVDAVMRQFRT 393 Query: 346 IGWMHNRLRMITASFLVKDLLVDWRIGE--EYFMSQLLDGDLASNNGGWQWAASTG---N 400 GW+ LR FL + +L W+ E FMS+ DL G WA+ TG Sbjct: 394 EGWVAPTLRQAVLWFLTRGVL--WQTPEIAVQFMSEFCLLDLPLAKGYAAWASGTGAWCE 451 Query: 401 DSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPI 460 + V + + + DP +IR W+PE+ N+ + IH P W + Y I Sbjct: 452 NDVAH--------KCPKVDP--NYIRQWVPEVANLTDEQIHEP--WTTQT--PTEYVSLI 497 Query: 461 VDHKKACHHTLNQYYAAKKQS 481 V HK + + ++Y+ K+S Sbjct: 498 VQHKISHRRSESKYHETLKRS 518 >gi|85709235|ref|ZP_01040300.1| DNA photolyase-like protein [Erythrobacter sp. NAP1] gi|85687945|gb|EAQ27949.1| DNA photolyase-like protein [Erythrobacter sp. NAP1] Length = 412 Score = 73.6 bits (179), Expect = 6e-11, Method: Compositional matrix adjust. Identities = 56/196 (28%), Positives = 91/196 (46%), Gaps = 18/196 (9%) Query: 213 QNALHILRKFCKEKVYYYVEQRD----IPA---IQGTSQLSPYLSIGVLSPRQCWNRLKE 265 + L L +F Y R+ +P + SQLSP+L G+LS R+ Sbjct: 8 KAGLDRLAEFAPRSGSAYASNRNYDDGVPEDGMLSNVSQLSPWLHAGLLSEREV------ 61 Query: 266 EFVDLLIKPKSG-AFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQ 324 + L + G A ++ E+ WR +++ + PSV I +S L + Sbjct: 62 -ILAALNEHGPGKAEKFIAEVFWRVYFKGYLEQRPSVWDAYKQGRDGALIAVENNSGLAK 120 Query: 325 AWKQ---GYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLL 381 +++ G TG D +R+L G++HN RM AS + L +DW++G ++F+ L+ Sbjct: 121 VYEEAVAGRTGIEAFDQWVRELVQTGYLHNHARMWFASVWIFTLKLDWQLGADFFLRHLM 180 Query: 382 DGDLASNNGGWQWAAS 397 DGD ASN W+W A Sbjct: 181 DGDAASNTLSWRWVAG 196 >gi|163731524|ref|ZP_02138971.1| deoxyribodipyrimidine photo-lyase, putative [Roseobacter litoralis Och 149] gi|161394978|gb|EDQ19300.1| deoxyribodipyrimidine photo-lyase, putative [Roseobacter litoralis Och 149] Length = 404 Score = 73.6 bits (179), Expect = 6e-11, Method: Compositional matrix adjust. Identities = 60/217 (27%), Positives = 93/217 (42%), Gaps = 33/217 (15%) Query: 207 MFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQG----TSQLSPYLSIGVLSPRQCWNR 262 MF AL L F + Y +R+ G S LSPYL +++ Sbjct: 8 MFLPTHTAALERLSAFVPQAGRDYATRRNYDFGPGNHTHVSGLSPYLRCRLIT------- 60 Query: 263 LKEEFVDLLIKPKS--GAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTE-----KIE 315 + E V+ +++ S A ++ E+ WR +++ + P+V WT+ Sbjct: 61 -ESEVVNAVLQRHSIAAAEKFMQEVFWRTYWKGWLELRPAV--------WTQYQVALDQA 111 Query: 316 WN---KDSHLLQAWK---QGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDW 369 WN + L W+ +G TG DA +L G++HN RM AS + L + W Sbjct: 112 WNDVQTQAGLRARWENACRGETGIDCFDAWAHELVETGYLHNHARMWFASIWIFTLELPW 171 Query: 370 RIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYF 406 +G ++F+ LLDGD ASN GW+W A Y Sbjct: 172 ELGADFFLRHLLDGDPASNTLGWRWVAGIQTQGKTYL 208 >gi|45643655|gb|AAS72903.1| cryptochrome 4 [Passer domesticus] Length = 359 Score = 73.6 bits (179), Expect = 6e-11, Method: Compositional matrix adjust. Identities = 53/162 (32%), Positives = 78/162 (48%), Gaps = 16/162 (9%) Query: 211 GEQNALHILRKFCKEK--VYYYVEQRDIP--AIQGTSQLSPYLSIGVLSPRQCWNRLKEE 266 GE L L + ++ V + + R +P + T+ LSPY S+G LS R + RL Sbjct: 201 GETEGLQRLERHLTDQGWVTSFTKPRTVPNSLLPSTTGLSPYFSMGCLSVRTFFYRLS-- 258 Query: 267 FVDLLIKPKSGAF---SWLNELIWREFYRHLMAFYPSVCM--GKPFIPWTEKIEWNKDSH 321 ++ + K + S +L+WREF+ + + P+ G P +I W KD+ Sbjct: 259 --NIYAQAKHHSLPPVSLQGQLLWREFFYTVASATPNFTQMAGNPI---CLQICWYKDAE 313 Query: 322 LLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363 L WK TGFP IDA M QL GW+H+ R A FL + Sbjct: 314 RLHKWKTAQTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTR 355 >gi|156744165|ref|YP_001434294.1| deoxyribodipyrimidine photolyase-like protein [Roseiflexus castenholzii DSM 13941] gi|156235493|gb|ABU60276.1| deoxyribodipyrimidine photolyase-like protein [Roseiflexus castenholzii DSM 13941] Length = 270 Score = 73.6 bits (179), Expect = 7e-11, Method: Compositional matrix adjust. Identities = 54/180 (30%), Positives = 82/180 (45%), Gaps = 32/180 (17%) Query: 243 SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLM------- 295 + LSPY+ GVLS + + ++ + A ++EL WR++++ L Sbjct: 67 THLSPYIRHGVLSLAEV-----RDAALSRVRRSADAAKLVSELGWRDYWQRLYERLGDNV 121 Query: 296 -----AFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMH 350 ++ C G + I +G TG IDA +L G++H Sbjct: 122 WRDQESYKTGYCAGDYAAELPDDI------------IEGRTGLACIDAFSHELRATGYLH 169 Query: 351 NRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFN 410 N RM A+++V + W+ G +F+ LLDGD ASNN WQW AST + PY IFN Sbjct: 170 NHARMWLAAYVVHWRRIRWQAGARWFLEHLLDGDPASNNLSWQWVASTFSHK-PY--IFN 226 >gi|226494726|ref|NP_001146620.1| hypothetical protein LOC100280217 [Zea mays] gi|219888051|gb|ACL54400.1| unknown [Zea mays] Length = 421 Score = 73.2 bits (178), Expect = 9e-11, Method: Compositional matrix adjust. Identities = 103/421 (24%), Positives = 166/421 (39%), Gaps = 40/421 (9%) Query: 1 MKATTAMSVHLVWLRNDLRITDNKAL----YAACHNSDAKVIAVFIATPEQWRQHGISAR 56 M+A TA + ++W R LR+ DN AL + A++ VF+ P R ++A Sbjct: 1 MEAATAATAAMMWFRKGLRVHDNPALDAARRHGAGAASARLYPVFVLDPRYLRPDAVAAS 60 Query: 57 QS---------HFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLF 107 F+ SL + L + + DD + + + + KL Sbjct: 61 PGSARAGVARIRFLLESLSDLDARLRRL--GSRLLLLRARDDVADAVCAALKDWNIGKLC 118 Query: 108 YNRQYEINEVRRDK-LLEKRLQHRVICKSFDDSVLLPPGSILN-HALQMYKVYTPFRKAL 165 + E + RDK + + L + + L P I+ + + Y F Sbjct: 119 FESDTEPYALARDKKVTDFALASGIEVLTPVSHTLFDPEEIIKKNGGRPPLTYQSFVSIA 178 Query: 166 IQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAID----PMFPIGEQNALHILRK 221 + A +P + TG +P + + I P F GE AL +++ Sbjct: 179 GEPPAPAMEEYSELPPLGDTGEYELLPVPTVEELGYGDISQEEIPPFHGGETEALRRMKE 238 Query: 222 FC--KEKVYYYVEQRDIPAI---QGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKS 276 KE V + + + P+ T+ LSPYL G LS R ++ +++ + K Sbjct: 239 SLQNKEWVAKFEKPKGDPSAFVKPSTTVLSPYLKFGCLSSRYFYHCIQDVHRSVRNHTKP 298 Query: 277 GAFSWLNELIWREFYRHLMAFYPSVCMGKPFI------PWTEKIEWNKDSHLLQAWKQGY 330 S +L+WR+F FY +V G P ++I W+++ L AW+ G Sbjct: 299 -PVSLTGQLLWRDF------FY-TVSYGTPNFDRMKGNKICKQIPWSENEDLFVAWRDGQ 350 Query: 331 TGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNG 390 TG+P IDA M QL GWMH+ R A FL + + GE L+ L NG Sbjct: 351 TGYPWIDAIMIQLRNWGWMHHLARHSVACFLTRGDMCCRCEGESSSRLHPLNSHLHPLNG 410 Query: 391 G 391 G Sbjct: 411 G 411 >gi|76880306|dbj|BAE45919.1| cryptochrome [Hyla japonica] Length = 377 Score = 73.2 bits (178), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 95/391 (24%), Positives = 153/391 (39%), Gaps = 43/391 (10%) Query: 7 MSVHLV-WLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASL 65 M V+ + W R LR+ DN AL SD + V+I P + + F+ L Sbjct: 1 MGVNAIHWFRKGLRLHDNPALKECIQGSDT-IRCVYILDPWFAGSSNVGINRWRFLLQCL 59 Query: 66 LQVQ---KSLSQKGIVFQYHQCSNFDDSI-EWLDSYCLQQRVTKLFYNRQYEINEVRRDK 121 + + L+ + V + F EW ++++L E RD Sbjct: 60 EDLDANLRKLNSRLFVIRGQPADVFPRLFKEW--------KISRLSIEYDSEPFGKERDA 111 Query: 122 LLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLV-QADLRSLPVP 180 ++K + S L L+ +++ P Q L+ + + +PV Sbjct: 112 AIKKLASEAAVEVIVRISHTL---YDLDKIIELNGGQPPLTYKRFQTLISKMEPLEIPVE 168 Query: 181 AI------RLTGPVTPS-----NIPRFFDYPFQAI---DPMFPIGEQNALHILRKFCKEK 226 I + T PV+ +P + F ++P GE AL L + + K Sbjct: 169 TITAEVMGKCTTPVSDDHDEKYGVPSLEELGFDTEGLPSAVWPGGETEALTRLERHLERK 228 Query: 227 VYYYVEQRDI----PAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWL 282 + +R + T+ LSPYL G LS + +L + + ++ K S S Sbjct: 229 AWVANFERPRMNANSLLASTTGLSPYLRFGCLSCCLFYFKLTDLY-KMVKKNSSPPLSLY 287 Query: 283 NELIWREFYRHLMAFYPSV--CMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAM 340 +L+WREF+ P G P +I W+++ L W +G TGFP IDA M Sbjct: 288 GQLLWREFFYTAATNNPRFDKMEGNPI---CVQIPWDRNPEALAKWAEGRTGFPWIDAIM 344 Query: 341 RQLNTIGWMHNRLRMITASFLVK-DLLVDWR 370 QL GW+H+ R A FL + DL + R Sbjct: 345 TQLRQEGWIHHLARHAVACFLTRGDLWISGR 375 >gi|311747654|ref|ZP_07721439.1| deoxyribodipyrimidine photolyase [Algoriphagus sp. PR1] gi|126575640|gb|EAZ79950.1| deoxyribodipyrimidine photolyase [Algoriphagus sp. PR1] Length = 365 Score = 72.8 bits (177), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 62/226 (27%), Positives = 99/226 (43%), Gaps = 21/226 (9%) Query: 241 GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPS 300 +QLSPY+S GV+S Q + E++ L P S + EL WR++++ + Sbjct: 33 AVTQLSPYISRGVISTNQVF-----EYIKSLNFPWSQCEKLVQELAWRDYWQQVW----- 82 Query: 301 VCMGKPFIPWTEKIEWNKDSHLL-QAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITAS 359 + G+ + + +H + A Q TG +D + L G+MHN +RM AS Sbjct: 83 LAKGEAIFEDLKNEQKPVQNHQIPSAIIQAKTGIEAVDQGILDLYQTGYMHNHMRMYVAS 142 Query: 360 FLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFD 419 W ++ S LLDGDLASN+ WQW A ++ + N K F+ Sbjct: 143 ICCNIANSHWLNPAKWMYSHLLDGDLASNHLSWQWVAGAFSNKK---YLANQENINKYFN 199 Query: 420 PQ--GTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDH 463 + GTF+ E + + T P L + + LP +D+ Sbjct: 200 SEQKGTFLDVAYHEFDELKT-----PELLLQTEEFTTKTTLPSIDN 240 >gi|298364134|gb|ADI79210.1| photolyase [Halococcus hamelinensis] Length = 263 Score = 72.8 bits (177), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 65/242 (26%), Positives = 102/242 (42%), Gaps = 14/242 (5%) Query: 89 DSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHRVIC-KSFDDSVLLPPGSI 147 D E L + +F+N Y RD+ +E L I ++F D+V PG+I Sbjct: 20 DPAEELPRLADEHGAEAVFWNHDYTGLARERDRRVESALDDADIDHETFHDAVHHEPGAI 79 Query: 148 LNHALQMYKVYTPFRKALIQNLVQADLRSLPVP---AIRLTGPVTPSNIPRFFDYPFQAI 204 + Y V++ F K + ++ S P P A+R P++ FD P A Sbjct: 80 TTNDGDPYAVFSYFGKKWLDREKES---SYPPPNGDALRAGDDDLPTSDDLGFDEP-DAT 135 Query: 205 DPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLK 264 P G + A L FC+ + Y +R+ PA GTS+LS L G + R+ R+ Sbjct: 136 PPE--AGTEAARDRLDSFCEAAIGEYETEREYPARAGTSRLSQDLKYGTIGIREVSERVA 193 Query: 265 EEFVDLLIKP--KSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHL 322 E D + ++ EL WREFY ++ + P V + + + IEW + Sbjct: 194 -EAADRADGDDVRESIEAYREELAWREFYTQVLRYNPEVVT-ENYSSYENPIEWRESDDD 251 Query: 323 LQ 324 L Sbjct: 252 LD 253 >gi|254461876|ref|ZP_05075292.1| deoxyribodipyrimidine photo-lyase, putative [Rhodobacterales bacterium HTCC2083] gi|206678465|gb|EDZ42952.1| deoxyribodipyrimidine photo-lyase, putative [Rhodobacteraceae bacterium HTCC2083] Length = 408 Score = 72.8 bits (177), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 63/236 (26%), Positives = 97/236 (41%), Gaps = 15/236 (6%) Query: 196 FFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQR--DIPAIQGT--SQLSPYLSI 251 F D P D +F L L F +Y QR D+ A + S LSP++ Sbjct: 12 FDDLPRLNKDVVFTPTRAAGLAQLETFVSRMGDHYTAQRNYDLGAQDRSTASALSPWIRH 71 Query: 252 GVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWT 311 +++ + R L S A ++ E+ WR +++ + +PSV Sbjct: 72 RLITEEEVLTRA------LARHSPSAASKFVQEVFWRGYFKGWLEQHPSVWKAFRHDLRL 125 Query: 312 EKIEWNKDSHLLQAWK---QGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVD 368 D L + +G +G D + +L G++HN RM AS + L + Sbjct: 126 AYARLENDEVLKHDYTDATEGRSGIACFDHWVNELVQTGYLHNHARMWFASIWIFSLRLP 185 Query: 369 WRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYF-RIFN-PTIQGKRFDPQG 422 W++G ++FM LLDGD ASN W+W Y R N G RF+P+G Sbjct: 186 WQLGADFFMQHLLDGDPASNTLSWRWVGGLHTKGKTYLARASNIAKYTGGRFNPEG 241 >gi|161138108|gb|ABX58026.1| cryptochrome 1b [Triticum aestivum] Length = 76 Score = 72.4 bits (176), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 33/72 (45%), Positives = 46/72 (63%) Query: 372 GEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPE 431 G +YF LLD DL S+ GWQ+ + + DS I NP ++G +FDP G ++R WLPE Sbjct: 2 GMKYFWDTLLDADLESDALGWQYISGSLPDSRELDHIDNPQLEGYKFDPHGEYVRRWLPE 61 Query: 432 LNNVPTQYIHAP 443 L +PT++IH P Sbjct: 62 LARLPTEWIHHP 73 >gi|254431208|ref|ZP_05044911.1| probable deoxyribodipyrimidine photolyase [Cyanobium sp. PCC 7001] gi|197625661|gb|EDY38220.1| probable deoxyribodipyrimidine photolyase [Cyanobium sp. PCC 7001] Length = 440 Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 60/196 (30%), Positives = 84/196 (42%), Gaps = 54/196 (27%) Query: 241 GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWL------------------ 282 + LSPY+ GVLS L + + F WL Sbjct: 57 AVTGLSPYIRHGVLS---------------LAEVRDAVFGWLRQRGYGEPGRRAEAQQLA 101 Query: 283 ----NELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWK--------QGY 330 NEL WR++++ L +G W + +E + H +A+ + Sbjct: 102 GKLINELGWRDYWQRLWRL-----LGDGI--WHD-LEPLRTGHPAEAYAAELPPDITEAR 153 Query: 331 TGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNG 390 TG IDA +L T GW+HN RM AS++V V W+ G +F+ LLDGD ASNN Sbjct: 154 TGLACIDAFAAELRTSGWLHNHARMWLASYVVHWRRVRWQAGARWFLQHLLDGDPASNNL 213 Query: 391 GWQWAASTGNDSVPYF 406 WQW AS+ + S PY Sbjct: 214 SWQWVASSFS-SKPYI 228 >gi|68164596|gb|AAY87325.1| predicted deoxyribodipyrimidine photolyase [uncultured bacterium BAC17H8] Length = 269 Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 53/172 (30%), Positives = 85/172 (49%), Gaps = 12/172 (6%) Query: 241 GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPS 300 ++LSPY+ GVLS + ++ V + P+ A ++ EL WR++++ + +P Sbjct: 66 AVTRLSPYIRHGVLS----LDEVRNHAVAAVRDPRE-AEKFVQELAWRDYWQRIYLAHPD 120 Query: 301 VCMG--KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITA 358 + + + E+ +D L TG ID L G++HN RM A Sbjct: 121 RIWNDVEAYKTGFDAGEYEQD--LPGDVADAETGVACIDQFATMLMETGYLHNHARMYLA 178 Query: 359 SFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFN 410 +++V V W+ G +F+ L+D D ASNN WQW AST ++ PY IFN Sbjct: 179 AYIVHWRRVSWQAGARWFLEHLIDADPASNNLSWQWVASTFSNK-PY--IFN 227 >gi|319954988|ref|YP_004166255.1| DNA photolyase fad-binding protein [Cellulophaga algicola DSM 14237] gi|319423648|gb|ADV50757.1| DNA photolyase FAD-binding protein [Cellulophaga algicola DSM 14237] Length = 378 Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 54/170 (31%), Positives = 78/170 (45%), Gaps = 14/170 (8%) Query: 239 IQGT-SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAF 297 I G+ S LSPYL+ GV+S +Q + L E + S A ++ EL WR++++ + Sbjct: 38 IDGSVSYLSPYLARGVISTKQVYQSLLERGFTI-----SNAEKFIQELAWRDYWQQVWIH 92 Query: 298 YPSVCMG--KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRM 355 + K P E E + + +G TG ID A+ L G+MHN LRM Sbjct: 93 KENAIDSDLKHPQPTVENYE------IPKIVAEGTTGIIAIDEAISLLYKTGYMHNHLRM 146 Query: 356 ITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPY 405 AS W+I ++ LLD D ASN WQW A ++ Y Sbjct: 147 YIASIACNVAKSHWKIPAQWMYYHLLDADWASNALSWQWVAGANSNKKYY 196 >gi|225873485|ref|YP_002754944.1| deoxyribodipyrimidine photolyase [Acidobacterium capsulatum ATCC 51196] gi|225793521|gb|ACO33611.1| deoxyribodipyrimidine photolyase [Acidobacterium capsulatum ATCC 51196] Length = 470 Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 109/447 (24%), Positives = 187/447 (41%), Gaps = 62/447 (13%) Query: 11 LVWLRNDLRITDNKALYAACHNSDA---KVIAVFIAT---PEQWRQHGISARQSHFIYAS 64 + W++ R DN AL A + V+A F A P +H + F+ Sbjct: 30 VYWMQRAQRALDNPALDMAIRIGNELGLPVVAYFSAISNFPHANLRHYV------FLNQG 83 Query: 65 LLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRR-DKLL 123 L +++ ++++ + F + +S+E L L++ + + E R +++ Sbjct: 84 LADIEEDMAERNVTFIVRRPPG--NSLEQL----LEEVQAAMLIGDENPCREPERWRQVI 137 Query: 124 EKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLV-----QADLRSLP 178 KRL + + D V++P H ++ F L Q LV QA+ +S P Sbjct: 138 AKRLN--MPYWTIDADVVVPSNLFPKHQYMVHIFRKRFEPLLPQYLVPQPVIQAE-KSWP 194 Query: 179 VP----AIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQR 234 P A + VT FD + +D F G A +L+ F K+ Y ++R Sbjct: 195 HPKGFEAFDVRHDVTEGWSK--FDRSVKPVD-SFHGGTHEAQRLLKDFVTNKLANYPKER 251 Query: 235 DIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELI-WREFYRH 293 + P + GTS+LSPYL G +SP +++ + + S+LNELI WR+ + Sbjct: 252 NHPELDGTSRLSPYLHFGHISPLTIALAVEDAHKNKHAS-REACDSYLNELIAWRDMAVN 310 Query: 294 LMAFYPSVCMGKPFIPWTEKI--EWNKDS----HLLQAWKQGYTGFPIIDAAMRQLNTIG 347 + F P + W +K E +D+ + L+ ++ T + +AA RQ+ G Sbjct: 311 FVKFVPGYDSFEAAPEWAQKTLREHARDTRDPIYTLEELERAETCDELWNAAQRQMLHAG 370 Query: 348 WMHNRLRMITASFLVK---DLLVDWR----IGEEYFMSQLLDGDLASNNGGWQWAASTGN 400 WMHN +RM A +++ + W + + YF LDG + G WA + Sbjct: 371 WMHNYMRMYWAKKILEWSPSPVQAWETCVYLNDRYF----LDGRDPNGYAGIAWAIGGVH 426 Query: 401 DSVPYF--------RIFNPTIQGKRFD 419 D P+F R + K+FD Sbjct: 427 DR-PWFERDIFGTIRYMSGNAAAKKFD 452 >gi|254505021|ref|ZP_05117172.1| hypothetical protein SADFL11_5060 [Labrenzia alexandrii DFL-11] gi|222441092|gb|EEE47771.1| hypothetical protein SADFL11_5060 [Labrenzia alexandrii DFL-11] Length = 384 Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 57/198 (28%), Positives = 93/198 (46%), Gaps = 15/198 (7%) Query: 243 SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKS--GAFSWLNELIWREFYRHLMAFYPS 300 S LSPY+ ++S ++E V ++ GA ++ E+ WR +++ + P+ Sbjct: 22 SCLSPYIRRRLIS--------EQEVVTAALRNHGLDGAEKFIQEVFWRGYFKGWLERRPA 73 Query: 301 VCMGKPFIPWTEKIEWNKDSHLLQA---WKQGYTGFPIIDAAMRQLNTIGWMHNRLRMIT 357 + + + KDS L QA + G TG DA + +L G++HN +RM Sbjct: 74 IWTSYRQGLTADLEDLKKDSGLRQAVARAEAGQTGIDCFDAWVNELIDTGYLHNHVRMWF 133 Query: 358 ASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPY-FRIFN-PTIQG 415 AS + L + WRIG ++F LLDGD ASN W+W A Y + +N G Sbjct: 134 ASIWIFTLKLPWRIGADFFYRHLLDGDPASNTLSWRWVAGLHTRGKTYEAQAWNIAKFTG 193 Query: 416 KRFDPQGTFIRHWLPELN 433 RF P+ + + + L+ Sbjct: 194 GRFAPESSELETGVKSLD 211 >gi|85374772|ref|YP_458834.1| DNA photolyase-like protein [Erythrobacter litoralis HTCC2594] gi|84787855|gb|ABC64037.1| DNA photolyase-like protein [Erythrobacter litoralis HTCC2594] Length = 407 Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 52/188 (27%), Positives = 83/188 (44%), Gaps = 18/188 (9%) Query: 219 LRKFCKEKVYYYVEQR---DIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPK 275 L+ F + Y E R D P SQLSP+L G+L + E ++ ++ Sbjct: 14 LQAFLPDAGRQYAETRNYDDGPGRGNVSQLSPWLHTGLLR--------EHEVLEATLREH 65 Query: 276 SG--AFSWLNELIWREFYRHLMAFYPSV----CMGKPFIPWTEKIEWNKDSHLLQAWKQG 329 A + NE+ WR +++ + PS+ C + T D + +G Sbjct: 66 GARAAEKFGNEIFWRVYFKGYLEQRPSIWRSYCQQRD-TALTALDRNAGDRTAYEEATEG 124 Query: 330 YTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNN 389 TG D ++L G++HN RM AS + L +DW +G ++F+ L+DGD ASN Sbjct: 125 RTGIGAFDYWAQELIETGYLHNHARMWFASIWIFTLKLDWTLGADFFLRHLVDGDAASNT 184 Query: 390 GGWQWAAS 397 W+W Sbjct: 185 LSWRWVGG 192 >gi|161138102|gb|ABX58023.1| cryptochrome 1a [Triticum aestivum] gi|161138104|gb|ABX58024.1| cryptochrome 1a [Triticum aestivum] gi|161138106|gb|ABX58025.1| cryptochrome 1a [Triticum aestivum] Length = 76 Score = 71.6 bits (174), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 33/72 (45%), Positives = 45/72 (62%) Query: 372 GEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPE 431 G +YF LLD DL S+ GWQ+ + + D RI NP +G +FDP G ++R WLPE Sbjct: 2 GMKYFWDTLLDADLESDALGWQYISGSLPDGRELDRIDNPQFEGYKFDPYGEYVRRWLPE 61 Query: 432 LNNVPTQYIHAP 443 L +PT++IH P Sbjct: 62 LARLPTEWIHHP 73 >gi|331656727|ref|ZP_08357689.1| deoxyribodipyrimidine photo-lyase (DNA photolyase)(Photoreactivating enzyme) [Escherichia coli TA206] gi|331054975|gb|EGI26984.1| deoxyribodipyrimidine photo-lyase (DNA photolyase)(Photoreactivating enzyme) [Escherichia coli TA206] Length = 57 Score = 71.2 bits (173), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 32/55 (58%), Positives = 39/55 (70%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFI 61 M+ HLVW R DLR DN AL AAC NS A+V+A++IATP QW H +S RQ+ I Sbjct: 1 MTTHLVWFRQDLRQHDNLALAAACRNSSARVLALYIATPHQWAAHNVSPRQAELI 55 >gi|99078346|ref|YP_611604.1| deoxyribodipyrimidine photo-lyase family protein [Ruegeria sp. TM1040] gi|99035484|gb|ABF62342.1| Deoxyribodipyrimidine photo-lyase family protein [Ruegeria sp. TM1040] Length = 410 Score = 70.9 bits (172), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 53/186 (28%), Positives = 80/186 (43%), Gaps = 11/186 (5%) Query: 241 GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPS 300 S LSPYL +L+ + L A ++ E++WR +++ M P Sbjct: 46 AVSMLSPYLRRRLLTEPEVIA------AALAAHGPQEADKFVQEVLWRGYFKGWMERRPE 99 Query: 301 VCMGKPFIPWTEKIEWNKDSHL---LQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMIT 357 V + + +D L + A + G TG D ++L G++HN RM Sbjct: 100 VWANYITGRDADFVALEEDPGLAIRVNAAETGETGLAYFDTWAKELVRTGYLHNHARMWF 159 Query: 358 ASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFN--PTIQG 415 AS + L + WR+G ++F+ LLDGD ASN W+W A PY + G Sbjct: 160 ASLWIFTLKLPWRLGADFFLRHLLDGDPASNTCSWRWVAGLHTRGKPYVAQASNIARFSG 219 Query: 416 KRFDPQ 421 RF PQ Sbjct: 220 GRFAPQ 225 >gi|91762575|ref|ZP_01264540.1| DNA photolyase-like protein [Candidatus Pelagibacter ubique HTCC1002] gi|91718377|gb|EAS85027.1| DNA photolyase-like protein [Candidatus Pelagibacter ubique HTCC1002] Length = 380 Score = 70.9 bits (172), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 55/198 (27%), Positives = 95/198 (47%), Gaps = 15/198 (7%) Query: 207 MFPIGEQNALHILRKFCKEKVYYYVEQRDI---PAIQ-GTSQLSPYLSIGVLSPRQCWNR 262 +F A+ L F ++ + Y + R+ P+ + TS LSPY++ G+++ Sbjct: 2 IFEASRAKAVDKLTNFIEQNLSDYSKLRNFDFGPSNRSNTSCLSPYITHGIINEL----- 56 Query: 263 LKEEFVDLLIKPKSGAFS--WLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDS 320 E VD +K S A + ++ E++WR +++ + P+V K E+ + Sbjct: 57 ---EVVDKSLKKFSFAKNEKFIQEVLWRVYWKGWLELRPNVWSDYLIELGKFKGEFKNNQ 113 Query: 321 HLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQL 380 + L A +G T + + +L ++HN RM AS + L + W++G E+FM L Sbjct: 114 NYLDA-IEGKTNIDCFNEWVIELKENNYLHNHTRMWFASIWIFTLELPWQLGAEFFMQHL 172 Query: 381 LDGDLASNNGGWQWAAST 398 DGD ASN GW+W A Sbjct: 173 FDGDAASNTLGWRWVAGV 190 >gi|300957649|ref|ZP_07169841.1| hypothetical protein HMPREF9547_03390 [Escherichia coli MS 175-1] gi|300315626|gb|EFJ65410.1| hypothetical protein HMPREF9547_03390 [Escherichia coli MS 175-1] Length = 58 Score = 70.9 bits (172), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 31/51 (60%), Positives = 38/51 (74%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQ 57 M+ HLVW R DLR+ DN AL AAC NS A+V+A++IATP QW H +S RQ Sbjct: 1 MTTHLVWFRQDLRLHDNLALAAACRNSSARVLALYIATPRQWATHNMSPRQ 51 >gi|126735413|ref|ZP_01751159.1| deoxyribodipyrimidine photo-lyase, putative [Roseobacter sp. CCS2] gi|126715968|gb|EBA12833.1| deoxyribodipyrimidine photo-lyase, putative [Roseobacter sp. CCS2] Length = 386 Score = 70.5 bits (171), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 53/196 (27%), Positives = 83/196 (42%), Gaps = 13/196 (6%) Query: 207 MFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEE 266 MF L L F Y +R+ + S LSPY+ +++ +E+ Sbjct: 1 MFEPTYTAGLERLAAFVPHAGRDYASKRNYDNLAHVSALSPYIRHRIIT--------EED 52 Query: 267 FVDLLIKPKS--GAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQ 324 + + S A ++ E+ WR +++ + PSV +S L Q Sbjct: 53 VLKATLARHSPQTAEKFIQEVYWRTYWKGWLEMRPSVWAMYRSDLQAALNRVQTESGLRQ 112 Query: 325 AWK---QGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLL 381 W+ +G TG D +QL G++HN RM AS + L + W +G ++FM LL Sbjct: 113 EWEAACKGDTGIDCFDHWAKQLADTGYLHNHARMWFASIWIFTLRLPWTLGADFFMRHLL 172 Query: 382 DGDLASNNGGWQWAAS 397 DGD ASN W+W Sbjct: 173 DGDAASNTLSWRWVGG 188 >gi|225848662|ref|YP_002728825.1| deoxyribodipyrimidine photo-lyase [Sulfurihydrogenibium azorense Az-Fu1] gi|225644140|gb|ACN99190.1| deoxyribodipyrimidine photo-lyase [Sulfurihydrogenibium azorense Az-Fu1] Length = 452 Score = 70.1 bits (170), Expect = 7e-10, Method: Compositional matrix adjust. Identities = 92/396 (23%), Positives = 168/396 (42%), Gaps = 21/396 (5%) Query: 14 LRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQKSLS 73 LR D + A+ A + +++ FI + + R F+ +L+ +K++ Sbjct: 29 LREDFNFSLEFAIQKANKLNKPLLVSFFITD----KYKHSNQRYYKFMIEGILKTKKAIE 84 Query: 74 QKGIVFQYHQCSNFDDSIEW-LDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHRVI 132 ++GI F + + +++ ++ C+ L R++ N + ++ +L++ V+ Sbjct: 85 ERGIKFVIQKDDYVNGTLKLSKEAVCIVLDKNYLKTQRKWRENIAKASQVAVYQLENDVV 144 Query: 133 CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPSN 192 S P + L + ++ KV F K + + ++ + + L V ++ P + Sbjct: 145 VPIQVVSDKPIPYAYL-YRDRLNKVIDRFLKPVEKIDLKVNSKDLDVESLEFKTPDEFLS 203 Query: 193 IPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIG 252 I D +D F G A L++F ++K+Y Y E R P+ TS LSPYL G Sbjct: 204 ILNI-DKTVSTVDKYFVGGYDEAEKRLKEFIEKKLYKYKEFRSDPSKDYTSNLSPYLHFG 262 Query: 253 VLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELI-WREFYRHLMAFYPSVCMGKPFIPWT 311 +SP ++ E + K S+ NELI WRE R+ + P + W Sbjct: 263 QISPL----KIVLEVLKHYDKNDENVVSFFNELIVWRELSRNFCWYNPLYNQYEGIPQWA 318 Query: 312 EKI--EWNKDS----HLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLV--- 362 + E KD + LQ +++ T P +AA ++L G +HN +RM A ++ Sbjct: 319 RQTLEEHKKDKRDYVYSLQEFEEAKTHDPYWNAAQKELLKTGKIHNYMRMYWAKKIIEWT 378 Query: 363 KDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAAST 398 +D + I LDG + GG W T Sbjct: 379 EDPKQAFDIACYLNDKYALDGRDPNGYGGISWCFGT 414 >gi|302384123|ref|YP_003819946.1| DNA photolyase FAD-binding protein [Brevundimonas subvibrioides ATCC 15264] gi|302194751|gb|ADL02323.1| DNA photolyase FAD-binding protein [Brevundimonas subvibrioides ATCC 15264] Length = 418 Score = 70.1 bits (170), Expect = 8e-10, Method: Compositional matrix adjust. Identities = 74/278 (26%), Positives = 113/278 (40%), Gaps = 47/278 (16%) Query: 208 FPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQG----TSQLSPYLSIGVLSPRQCWNRL 263 FP L L F Y R+ A G S LSP+L +L+ R+ + Sbjct: 8 FPPTRAAGLQRLADFVPHAGEAYAMGRNTDAGPGGHLAVSGLSPWLRHRLLTEREVVAGV 67 Query: 264 KEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTE---KIEWNKDS 320 E P++ A ++ E++WR +++ + P V WT + + + S Sbjct: 68 LERH-----DPRA-AQRFIQEVLWRTYWKGWLQMNPEV--------WTRYQAERDAPRAS 113 Query: 321 HLLQAWKQ---GYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFM 377 L +A Q G TG D R+L G++HN RM AS + L + W +G ++F+ Sbjct: 114 GLERAVAQAEAGATGIEGFDDWARELVRTGYLHNHARMWFASIWIFTLGLPWALGADFFL 173 Query: 378 SQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPT----IQGKRFDPQGTFIRHWLPELN 433 LLDGD ASN W+W A G +V + P RF P+G R LP Sbjct: 174 RHLLDGDPASNTLSWRWVA--GLQTVGKTYLATPENIQRFTNGRFKPRGLATRA-LP--- 227 Query: 434 NVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTL 471 L ++ L PLP+++ +L Sbjct: 228 -------------LSEDPLPAARPLPMLEASPPAGRSL 252 >gi|45643657|gb|AAS72904.1| cryptochrome 2 variant 1 [Passer domesticus] Length = 361 Score = 69.7 bits (169), Expect = 9e-10, Method: Compositional matrix adjust. Identities = 55/176 (31%), Positives = 79/176 (44%), Gaps = 15/176 (8%) Query: 197 FDYPFQAIDP-MFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS------QLSPYL 249 +P + P ++ GE AL L K + K + V + P + S LSPYL Sbjct: 188 LGFPTDGLAPAVWQGGETEALARLDKHLERKAW--VANYERPRMNANSLLASPTGLSPYL 245 Query: 250 SIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSV--CMGKPF 307 G LS R + RL E + + + + S +L+WREF+ P G P Sbjct: 246 RFGCLSCRLFYYRLWELYKKV-KRNSTPPLSLYGQLLWREFFYTAATNNPKFDRMEGNPI 304 Query: 308 IPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363 +I W+++ L W +G TGFP IDA M QL GW+H+ R A FL + Sbjct: 305 CI---QIPWDRNPEALAKWAEGKTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTR 357 >gi|45643659|gb|AAS72905.1| cryptochrome 2 variant 2 [Passer domesticus] Length = 361 Score = 69.7 bits (169), Expect = 9e-10, Method: Compositional matrix adjust. Identities = 55/176 (31%), Positives = 79/176 (44%), Gaps = 15/176 (8%) Query: 197 FDYPFQAIDP-MFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS------QLSPYL 249 +P + P ++ GE AL L K + K + V + P + S LSPYL Sbjct: 188 LGFPTDGLAPAVWQGGETEALARLDKHLERKAW--VANYERPRMNANSLLASPTGLSPYL 245 Query: 250 SIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSV--CMGKPF 307 G LS R + RL E + + + + S +L+WREF+ P G P Sbjct: 246 RFGCLSCRLFYYRLWELYKKV-KRNSTPPLSLYGQLLWREFFYTAATNNPKFDRMEGNPI 304 Query: 308 IPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363 +I W+++ L W +G TGFP IDA M QL GW+H+ R A FL + Sbjct: 305 CI---QIPWDRNPEALAKWAEGKTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTR 357 >gi|315500507|ref|YP_004089309.1| DNA photolyase FAD-binding protein [Asticcacaulis excentricus CB 48] gi|315418519|gb|ADU15158.1| DNA photolyase FAD-binding protein [Asticcacaulis excentricus CB 48] Length = 390 Score = 69.7 bits (169), Expect = 9e-10, Method: Compositional matrix adjust. Identities = 56/215 (26%), Positives = 88/215 (40%), Gaps = 13/215 (6%) Query: 214 NALHILRKFCKEKVYYYVEQRDI-PAIQGT---SQLSPYLSIGVLSPRQCWNRLKEEFVD 269 AL L F Y R+I P T S+LSPY+ ++ + ++ Sbjct: 10 QALERLEAFLPRAGSAYARDRNIDPGPNDTGHVSKLSPYVRHRLIGEWELARAAEKAHGA 69 Query: 270 LLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQG 329 K +++E+ WR ++R + P++ +++ E + + A G Sbjct: 70 AASK-------FIDEVCWRSYWRGYLEMRPALWASYVDYLLSDEAETARQTDTYCAAVSG 122 Query: 330 YTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNN 389 TG D +L T G++HN RM AS V L + W++G +F+ LLDGD A+N Sbjct: 123 QTGIDAFDVWTAELITTGYLHNHARMSFASIWVHTLRLPWQLGAAFFLEHLLDGDEAANT 182 Query: 390 GGWQWAASTGNDSVPYFRIFNP--TIQGKRFDPQG 422 W+W A Y T RF P G Sbjct: 183 LSWRWVAGLHTPGKVYLASSEAIDTCSAGRFRPTG 217 >gi|323449922|gb|EGB05806.1| hypothetical protein AURANDRAFT_30135 [Aureococcus anophagefferens] Length = 73 Score = 69.7 bits (169), Expect = 1e-09, Method: Composition-based stats. Identities = 34/73 (46%), Positives = 45/73 (61%) Query: 322 LLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLL 381 L W +G TG+P +DA MRQL G M + LR + A+FLV+DL V WR G E+F + LL Sbjct: 1 LFAKWTRGATGYPFVDAGMRQLAAEGRMPHLLRQLCAAFLVRDLRVPWRWGAEWFEAHLL 60 Query: 382 DGDLASNNGGWQW 394 D +N G W + Sbjct: 61 DHAPDANYGNWGY 73 >gi|72382567|ref|YP_291922.1| putative DNA photolyase [Prochlorococcus marinus str. NATL2A] gi|72002417|gb|AAZ58219.1| putative DNA photolyase [Prochlorococcus marinus str. NATL2A] Length = 371 Score = 69.7 bits (169), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 40/129 (31%), Positives = 64/129 (49%), Gaps = 11/129 (8%) Query: 281 WLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKI---EWNKDSHLLQAWKQGYTGFPIID 337 + +E++WR +++ + Y S+ W E I E + +S+L+ + G TG D Sbjct: 68 YTDEILWRIYWKGYLENYKSI--------WFEYINFKENSNNSYLISSAMNGKTGIDCFD 119 Query: 338 AAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAAS 397 + +L ++HN RM AS + L + W++G FM LLDGD ASN W+W A Sbjct: 120 TWIEELKENNYLHNHARMWFASIWIFTLGLPWQLGARLFMKHLLDGDAASNTLSWRWVAG 179 Query: 398 TGNDSVPYF 406 + PY Sbjct: 180 MHTNKKPYL 188 >gi|227505175|ref|ZP_03935224.1| conserved hypothetical protein [Corynebacterium striatum ATCC 6940] gi|227198224|gb|EEI78272.1| conserved hypothetical protein [Corynebacterium striatum ATCC 6940] Length = 120 Score = 69.3 bits (168), Expect = 1e-09, Method: Composition-based stats. Identities = 29/54 (53%), Positives = 40/54 (74%) Query: 323 LQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYF 376 L+AW+ G TG P++DA MR+L G+MHN +RM+ SFL K+L + WR GEE+F Sbjct: 40 LEAWRTGETGIPLVDAGMRELWQTGYMHNHVRMVVGSFLTKNLGIHWRHGEEWF 93 >gi|254251923|ref|ZP_04945241.1| Deoxyribodipyrimidine photolyase [Burkholderia dolosa AUO158] gi|124894532|gb|EAY68412.1| Deoxyribodipyrimidine photolyase [Burkholderia dolosa AUO158] Length = 93 Score = 69.3 bits (168), Expect = 1e-09, Method: Composition-based stats. Identities = 35/94 (37%), Positives = 48/94 (51%), Gaps = 12/94 (12%) Query: 396 ASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLN 455 A G D+ PYFR+FNP QG++ P G +R W+PEL V +HA W D + L+L Sbjct: 2 AGCGADAAPYFRVFNPVAQGRKLGPSGAHVRRWVPELARVDDAAVHA--RW-DASPLTLA 58 Query: 456 ---------YPLPIVDHKKACHHTLNQYYAAKKQ 480 YP P+VDH A L+ + K+ Sbjct: 59 AAGVRLGVVYPAPLVDHDAARRRALDAFATLPKR 92 >gi|146337586|ref|YP_001202634.1| putative deoxyribodipyrimidine photo-lyase [Bradyrhizobium sp. ORS278] gi|146190392|emb|CAL74388.1| putative Deoxyribodipyrimidine photo-lyase [Bradyrhizobium sp. ORS278] Length = 406 Score = 68.9 bits (167), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 51/175 (29%), Positives = 76/175 (43%), Gaps = 31/175 (17%) Query: 282 LNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHL------------LQAWKQG 329 + E+IWR +++ + P V WT + +D+ L + A + G Sbjct: 77 VEEVIWRGYFKGWLERRPQV--------WTSYLR-GRDADLERLDSDGALQARVAAAEAG 127 Query: 330 YTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNN 389 TG DA ++L G +HN RM AS + L + WR+G ++F+ LLDGD ASN Sbjct: 128 RTGLACFDAFAQELVATGMLHNHARMWFASLWIFTLGLPWRLGADFFLRHLLDGDPASNT 187 Query: 390 GGWQWAASTGNDSVPYFRIFNPTIQ--GKRFDPQGTFIRHWLPELNNVPTQYIHA 442 GW+W A Y + Q RF P+ PE +P Q + A Sbjct: 188 LGWRWVAGLHTRGKVYAATASNIAQYSAGRFAPR--------PEDIVIPAQGLEA 234 >gi|124026272|ref|YP_001015388.1| DNA photolyase-like protein [Prochlorococcus marinus str. NATL1A] gi|123961340|gb|ABM76123.1| DNA photolyase-like protein [Prochlorococcus marinus str. NATL1A] Length = 371 Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 61/214 (28%), Positives = 95/214 (44%), Gaps = 35/214 (16%) Query: 197 FDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSP 256 FD +D F N+ H LR + Y +E R SQ+S Y S Sbjct: 4 FDEANDLLDN-FIFNHLNSYHQLRNYD-----YGIEDR-----TNVSQISKYTS------ 46 Query: 257 RQCWNRLKEEFVDLL--IKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKI 314 +R+ EF D++ +K + +E++WR +++ + Y S+ W E I Sbjct: 47 ----HRILYEF-DIIEKLKKYDKKQKYTDEILWRIYWKGYLENYKSI--------WFEYI 93 Query: 315 ---EWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRI 371 E + +S+L+ + G TG D + +L ++HN RM AS + L + W++ Sbjct: 94 NFKENSNNSYLISSAINGKTGIDCFDTWIEELRENNYLHNHARMWFASIWIFTLGLPWQL 153 Query: 372 GEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPY 405 G FM LLDGD ASN W+W A + PY Sbjct: 154 GARLFMKHLLDGDAASNTLSWRWVAGMHTNKKPY 187 >gi|297184363|gb|ADI20479.1| deoxyribodipyrimidine photolyase [uncultured alpha proteobacterium EB080_L58F04] Length = 278 Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 60/216 (27%), Positives = 89/216 (41%), Gaps = 21/216 (9%) Query: 218 ILRKFCKEKVYYYVEQRDIPAIQG----TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIK 273 LR F Y R+ G S LSPYL R+ +L Sbjct: 21 TLRAFAPRMGKGYTNGRNHDRGAGKHRDVSMLSPYLR------RRLVMEQDAVATAVLEH 74 Query: 274 PKSGAFSWLNELIWREFYRHLMAFYPSV------CMGKPFIPWTEKIEWNKDSHLLQAWK 327 GA ++ E+IWR +++ M P V + + + + +A++ Sbjct: 75 GAEGAEKFIQEVIWRGYFKGWMERRPVVWDQYREGLMRDLMALDRDRGLRRRVESAEAYQ 134 Query: 328 QGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLAS 387 TG D +L G++HN RM AS + L + WR+G ++F LLDGD AS Sbjct: 135 ---TGLDYFDNWAEELVETGYLHNHARMWFASIWIFTLELPWRLGADFFYRHLLDGDPAS 191 Query: 388 NNGGWQWAASTGNDSVPYF-RIFN-PTIQGKRFDPQ 421 N GW+W A PY+ R +N KRF+P+ Sbjct: 192 NTLGWRWVAGLHTRGKPYYARAWNIAKFTDKRFNPR 227 >gi|317406428|gb|EFV86641.1| hypothetical protein HMPREF0005_05613 [Achromobacter xylosoxidans C54] Length = 151 Score = 68.2 bits (165), Expect = 3e-09, Method: Composition-based stats. Identities = 49/150 (32%), Positives = 77/150 (51%), Gaps = 3/150 (2%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 L+WLR DLR+ DN AL AA ++ A+FIA P QWR HG + + F +L + + Sbjct: 4 LIWLRTDLRLHDNPALAAA--AAEGTATALFIAAPGQWRLHGDAPAKVDFWLRNLRTLSR 61 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130 L++ GI + +D + L +C + +T + N ++ +NE RRD + RL Sbjct: 62 DLARLGIPLKLLTVDTWDQVPDALPRFCREHGITAVHANTEWAVNERRRDDAVACRLAEA 121 Query: 131 VICKSFDDSV-LLPPGSILNHALQMYKVYT 159 I + LL PG+++ Y+VYT Sbjct: 122 GIDWTLHHGASLLRPGTVVTGKGDCYRVYT 151 >gi|161138098|gb|ABX58021.1| cryptochrome 2 [Triticum aestivum] Length = 76 Score = 68.2 bits (165), Expect = 3e-09, Method: Composition-based stats. Identities = 30/72 (41%), Positives = 45/72 (62%) Query: 372 GEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPE 431 G +YF LLD D+ S+ GWQ+ A D R+ NP +QG+++DP G ++R W+PE Sbjct: 2 GMKYFWDVLLDADIESDILGWQYIAGCLPDGHELGRLDNPEVQGQKYDPDGEYVRTWIPE 61 Query: 432 LNNVPTQYIHAP 443 L +P ++IH P Sbjct: 62 LARMPGEWIHHP 73 >gi|255564190|ref|XP_002523092.1| DNA photolyase, putative [Ricinus communis] gi|223537654|gb|EEF39277.1| DNA photolyase, putative [Ricinus communis] Length = 458 Score = 68.2 bits (165), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 78/322 (24%), Positives = 136/322 (42%), Gaps = 42/322 (13%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISAR--------QSHFIY 62 +VW RNDLR+ DN+ L +A +N V+ V+ P R++G S+ ++ F+ Sbjct: 129 IVWFRNDLRVHDNECLNSA-NNESMSVLPVYCFDP---REYGKSSSGFDKTGPYRASFLI 184 Query: 63 ASLLQVQKSLSQKG--IVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120 S+ ++K+L +G +V + + L ++ +++ +EV+ + Sbjct: 185 ESVTDLRKNLQDRGSDLVVRVGKPETV------LVELAKAIGADAVYAHKEVSHDEVKAE 238 Query: 121 KLLEKRLQHR-VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLP- 178 +E ++ V K F S L + M Y FR+ + V+ + +L Sbjct: 239 DKIEAAMKDEGVEVKYFWGSTLYHVDDLPFKLEDMPSNYGGFREKVHGLEVRKTIAALDQ 298 Query: 179 VPAIRLTGPVTPSNIPRFFDY---PFQAIDPMFPI----GEQNALHILRKF---CKEKVY 228 + G V P IP D P Q P GE AL L+KF C+ + Sbjct: 299 LKGKPSRGDVEPGEIPSLLDLGLNPTQGGKPAATASMVGGETEALQRLKKFAAECQAQPP 358 Query: 229 YYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSG---------AF 279 Q I + ++SP+L++G +SPR ++ LK+ + G Sbjct: 359 KGGSQDSIYGANFSCKISPWLTMGCISPRSMFDELKKTATRTISAASKGNDGGSPPDTGM 418 Query: 280 SWLN-ELIWREFYRHLMAFYPS 300 +WL EL+WR+F+R + Y S Sbjct: 419 NWLMFELLWRDFFRFITKKYSS 440 >gi|84516926|ref|ZP_01004284.1| DNA photolyase-like protein [Loktanella vestfoldensis SKA53] gi|84509394|gb|EAQ05853.1| DNA photolyase-like protein [Loktanella vestfoldensis SKA53] Length = 400 Score = 68.2 bits (165), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 57/223 (25%), Positives = 87/223 (39%), Gaps = 15/223 (6%) Query: 207 MFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEE 266 MF +A+ L F Y R+ I S LSPY+ +++ + Sbjct: 1 MFTPTYTDAVTRLAAFTPHAGRDYAAMRNHDDIAHVSALSPYIRHRIITEADVLRAV--- 57 Query: 267 FVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAW 326 L A ++ E+ WR +++ + P+V + + L W Sbjct: 58 ---LARHSPQAAEKFVQEVFWRTYWKGWLELRPTVWANYQRDLAAAMNQIQTQAGLRAQW 114 Query: 327 KQ---GYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDG 383 + G TG D RQL G++HN RM AS + L + W +G ++F+ LLDG Sbjct: 115 ETACLGQTGIDGFDHWARQLADTGYLHNHARMWFASIWIHTLKLPWVLGADFFLRHLLDG 174 Query: 384 DLASNNGGWQWAASTGNDSVPYFRIFNPTIQGK----RFDPQG 422 D ASN W+W Y + P K RF P+G Sbjct: 175 DAASNTLSWRWVGGIQTQGKAY--LAQPDNIAKYTQGRFRPEG 215 >gi|108859915|emb|CAK26694.1| putative cryptochrome [Picea abies] gi|108859929|emb|CAK26701.1| putative cryptochrome [Picea abies] gi|108859931|emb|CAK26702.1| putative cryptochrome [Picea abies] gi|108859945|emb|CAK26709.1| putative cryptochrome [Picea abies] gi|108859969|emb|CAK26721.1| putative cryptochrome [Picea abies] Length = 259 Score = 67.8 bits (164), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 37/89 (41%), Positives = 50/89 (56%), Gaps = 6/89 (6%) Query: 384 DLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIH-- 441 DL + GWQ+ + D RI NP +G +FDP G ++R WLPEL +PT++IH Sbjct: 1 DLECDALGWQYISGCLPDGREMDRIDNPQFEGYKFDPAGEYVRRWLPELARLPTEWIHHP 60 Query: 442 --APHSWLDKNDLSL--NYPLPIVDHKKA 466 AP + L + L NYPLPIV+ A Sbjct: 61 WDAPRAVLQAAGVELGSNYPLPIVEISTA 89 >gi|108859871|emb|CAK26672.1| putative cryptochrome [Picea abies] gi|108859873|emb|CAK26673.1| putative cryptochrome [Picea abies] gi|108859875|emb|CAK26674.1| putative cryptochrome [Picea abies] gi|108859879|emb|CAK26676.1| putative cryptochrome [Picea abies] gi|108859881|emb|CAK26677.1| putative cryptochrome [Picea abies] gi|108859883|emb|CAK26678.1| putative cryptochrome [Picea abies] gi|108859885|emb|CAK26679.1| putative cryptochrome [Picea abies] gi|108859887|emb|CAK26680.1| putative cryptochrome [Picea abies] gi|108859889|emb|CAK26681.1| putative cryptochrome [Picea abies] gi|108859891|emb|CAK26682.1| putative cryptochrome [Picea abies] gi|108859893|emb|CAK26683.1| putative cryptochrome [Picea abies] gi|108859899|emb|CAK26686.1| putative cryptochrome [Picea abies] gi|108859901|emb|CAK26687.1| putative cryptochrome [Picea abies] gi|108859903|emb|CAK26688.1| putative cryptochrome [Picea abies] gi|108859907|emb|CAK26690.1| putative cryptochrome [Picea abies] gi|108859909|emb|CAK26691.1| putative cryptochrome [Picea abies] gi|108859911|emb|CAK26692.1| putative cryptochrome [Picea abies] gi|108859917|emb|CAK26695.1| putative cryptochrome [Picea abies] gi|108859921|emb|CAK26697.1| putative cryptochrome [Picea abies] gi|108859923|emb|CAK26698.1| putative cryptochrome [Picea abies] gi|108859925|emb|CAK26699.1| putative cryptochrome [Picea abies] gi|108859927|emb|CAK26700.1| putative cryptochrome [Picea abies] gi|108859933|emb|CAK26703.1| putative cryptochrome [Picea abies] gi|108859935|emb|CAK26704.1| putative cryptochrome [Picea abies] gi|108859937|emb|CAK26705.1| putative cryptochrome [Picea abies] gi|108859939|emb|CAK26706.1| putative cryptochrome [Picea abies] gi|108859941|emb|CAK26707.1| putative cryptochrome [Picea abies] gi|108859943|emb|CAK26708.1| putative cryptochrome [Picea abies] gi|108859949|emb|CAK26711.1| putative cryptochrome [Picea abies] gi|108859951|emb|CAK26712.1| putative cryptochrome [Picea abies] gi|108859953|emb|CAK26713.1| putative cryptochrome [Picea abies] gi|108859955|emb|CAK26714.1| putative cryptochrome [Picea abies] gi|108859957|emb|CAK26715.1| putative cryptochrome [Picea abies] gi|108859959|emb|CAK26716.1| putative cryptochrome [Picea abies] gi|108859961|emb|CAK26717.1| putative cryptochrome [Picea abies] gi|108859963|emb|CAK26718.1| putative cryptochrome [Picea abies] gi|108859965|emb|CAK26719.1| putative cryptochrome [Picea abies] gi|108859967|emb|CAK26720.1| putative cryptochrome [Picea abies] gi|108859973|emb|CAK26723.1| putative cryptochrome [Picea abies] Length = 259 Score = 67.8 bits (164), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 37/89 (41%), Positives = 50/89 (56%), Gaps = 6/89 (6%) Query: 384 DLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIH-- 441 DL + GWQ+ + D RI NP +G +FDP G ++R WLPEL +PT++IH Sbjct: 1 DLECDALGWQYISGCLPDGREMDRIDNPQFEGYKFDPAGEYVRRWLPELARLPTEWIHHP 60 Query: 442 --APHSWLDKNDLSL--NYPLPIVDHKKA 466 AP + L + L NYPLPIV+ A Sbjct: 61 WDAPRAVLQAAGVELGSNYPLPIVEISTA 89 >gi|108859897|emb|CAK26685.1| putative cryptochrome [Picea abies] Length = 259 Score = 67.8 bits (164), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 37/89 (41%), Positives = 50/89 (56%), Gaps = 6/89 (6%) Query: 384 DLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIH-- 441 DL + GWQ+ + D RI NP +G +FDP G ++R WLPEL +PT++IH Sbjct: 1 DLECDALGWQYISGCLPDGREMDRIDNPQFEGYKFDPAGEYVRRWLPELARLPTEWIHHP 60 Query: 442 --APHSWLDKNDLSL--NYPLPIVDHKKA 466 AP + L + L NYPLPIV+ A Sbjct: 61 WDAPRAVLQAAGVELGSNYPLPIVEISTA 89 >gi|254440134|ref|ZP_05053628.1| hypothetical protein OA307_5004 [Octadecabacter antarcticus 307] gi|198255580|gb|EDY79894.1| hypothetical protein OA307_5004 [Octadecabacter antarcticus 307] Length = 384 Score = 67.8 bits (164), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 53/180 (29%), Positives = 82/180 (45%), Gaps = 8/180 (4%) Query: 250 SIGVLSP---RQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP 306 ++ VLSP R+ + L A ++ E+IWR +++ + P V Sbjct: 20 AVSVLSPYIRRRLLTEAEVVAAALTTHGPDDARVFIEEVIWRGYFKGWLERRPQVWDSYA 79 Query: 307 FIPWTEKIEWNKDSHLL---QAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363 + + N+D L + + G TG D ++L G++HN RM AS + Sbjct: 80 LGLNADLVSLNRDRRLRRDLELAETGQTGMDYFDTWAQELVDTGYLHNHARMWFASIWIF 139 Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPY-FRIFN-PTIQGKRFDPQ 421 L + WR+G ++F LLDGD A+N W+WAA PY R N T G RF+P+ Sbjct: 140 TLGLPWRLGADFFYRHLLDGDAAANTLNWRWAAGLHTRGKPYPARAKNIATFTGGRFNPR 199 >gi|108859877|emb|CAK26675.1| putative cryptochrome [Picea abies] gi|108859895|emb|CAK26684.1| putative cryptochrome [Picea abies] gi|108859905|emb|CAK26689.1| putative cryptochrome [Picea abies] gi|108859913|emb|CAK26693.1| putative cryptochrome [Picea abies] gi|108859919|emb|CAK26696.1| putative cryptochrome [Picea abies] gi|108859947|emb|CAK26710.1| putative cryptochrome [Picea abies] gi|108859971|emb|CAK26722.1| putative cryptochrome [Picea abies] Length = 259 Score = 67.8 bits (164), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 37/89 (41%), Positives = 50/89 (56%), Gaps = 6/89 (6%) Query: 384 DLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIH-- 441 DL + GWQ+ + D RI NP +G +FDP G ++R WLPEL +PT++IH Sbjct: 1 DLECDALGWQYISGCLPDGREMDRIDNPQFEGYKFDPAGEYVRRWLPELARLPTEWIHHP 60 Query: 442 --APHSWLDKNDLSL--NYPLPIVDHKKA 466 AP + L + L NYPLPIV+ A Sbjct: 61 WDAPRAVLQAAGVELGSNYPLPIVEISTA 89 >gi|161138100|gb|ABX58022.1| cryptochrome 2 [Triticum aestivum] Length = 76 Score = 67.8 bits (164), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 29/72 (40%), Positives = 46/72 (63%) Query: 372 GEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPE 431 G +YF LLD D+ S+ GWQ+ + + D R+ NP +QG+++DP G ++R W+PE Sbjct: 2 GMKYFWDVLLDADIESDILGWQYISGSLPDGHELGRLDNPEVQGQKYDPDGEYVRTWIPE 61 Query: 432 LNNVPTQYIHAP 443 L +P ++IH P Sbjct: 62 LARMPGEWIHHP 73 >gi|31322268|gb|AAP22940.1| cryptochrome 1 [Arvicanthis ansorgei] Length = 155 Score = 67.4 bits (163), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 39/109 (35%), Positives = 56/109 (51%), Gaps = 7/109 (6%) Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423 DL + W G + F LLD D + N G W W S + +F + P G+R DP G Sbjct: 2 DLWISWEEGMKVFEELLLDADWSINAGSWMWL-SCSSFFQQFFHCYCPVGFGRRTDPNGD 60 Query: 424 FIRHWLPELNNVPTQYIHAPHSW------LDKNDLSLNYPLPIVDHKKA 466 +IR +LP L P +YI+ P + + K + LNYP P+V+H +A Sbjct: 61 YIRRYLPVLRGFPAKYIYDPWNAPEGVQKVAKCLIGLNYPKPMVNHAEA 109 >gi|296419444|ref|XP_002839318.1| hypothetical protein [Tuber melanosporum Mel28] gi|295635446|emb|CAZ83509.1| unnamed protein product [Tuber melanosporum] Length = 265 Score = 67.4 bits (163), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 50/187 (26%), Positives = 85/187 (45%), Gaps = 52/187 (27%) Query: 280 SWLNELIWREFYRHLMAFYPSVCMGKPF-IPWTEKIEWNKDSHLLQAW-KQGYTGFPIID 337 +W++E+ ++F+++++ +P VC K +P + +++ + L +++ G+TG PIID Sbjct: 118 TWISEIAQKDFHKNVLVNWPFVCTNKTSKLPHSPTPQYS--TSLAESYFYAGHTGDPIID 175 Query: 338 AAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAAS 397 AA+RQL ++ NR R + Sbjct: 176 AAIRQLQKTKYIRNRARTV--------------------------------------CVG 197 Query: 398 TGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYP 457 TG D PYFR+FNP ++ +F P IR W+ +L V HAP LD+ Sbjct: 198 TGVDPQPYFRLFNP-VKSLQFYPHSEHIRTWVGKLKEV-----HAPPKVLDEEGAK---- 247 Query: 458 LPIVDHK 464 P+VDH+ Sbjct: 248 KPLVDHE 254 >gi|149198711|ref|ZP_01875754.1| deoxyribodipyrimidine photolyase-like protein [Lentisphaera araneosa HTCC2155] gi|149138147|gb|EDM26557.1| deoxyribodipyrimidine photolyase-like protein [Lentisphaera araneosa HTCC2155] Length = 365 Score = 67.4 bits (163), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 54/182 (29%), Positives = 84/182 (46%), Gaps = 32/182 (17%) Query: 230 YVEQRDIPAIQGT-SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWR 288 Y + R+ + GT S LSPY+S GV+S R ++ L + +L K ++ EL WR Sbjct: 23 YAKTRNF--LDGTVSCLSPYISRGVISTRTVYDSLIKRGYNLEKIEK-----FVQELAWR 75 Query: 289 EFYRHLMAFYPSVCMGKPFIPWTEKIEWNKD-SHLLQAWK---------QGYTGFPIIDA 338 ++++ FY I+ NKD H QA+ +G + + Sbjct: 76 DYWQSQWKFYG--------------IKINKDLRHTQQAFHNHGMPHCLVKGQCSIQMFNT 121 Query: 339 AMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAAST 398 A++QLN+ G++HN +RM A + W ++ L+DGD ASN WQW A Sbjct: 122 AIKQLNSTGYLHNHMRMYLAMSICNIGSYHWHKPAQWMYYNLIDGDWASNALSWQWVAGC 181 Query: 399 GN 400 N Sbjct: 182 LN 183 >gi|254456085|ref|ZP_05069514.1| conserved hypothetical protein [Candidatus Pelagibacter sp. HTCC7211] gi|207083087|gb|EDZ60513.1| conserved hypothetical protein [Candidatus Pelagibacter sp. HTCC7211] Length = 379 Score = 67.0 bits (162), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 51/195 (26%), Positives = 89/195 (45%), Gaps = 11/195 (5%) Query: 207 MFPIGEQNALHILRKFCKEKVYYYVEQRDIP----AIQGTSQLSPYLSIGVLSPRQCWNR 262 +F AL L F + + Y + R+ S LSPY++ G++S + ++ Sbjct: 2 IFEASRAKALDKLNHFVESNLSQYSKLRNFDFGPDNRSNISCLSPYITHGIISELEVIDK 61 Query: 263 LKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHL 322 ++F K+ F + E++WR +++ + P+V + E+ + Sbjct: 62 SLKKFS----FTKNEKF--IQEVLWRVYWKGWLELRPNVWSDFLMELNNLRNEFKDKQNY 115 Query: 323 LQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLD 382 L A +G T + + +L ++HN RM AS + L + W++G E+FM L D Sbjct: 116 LDA-IEGKTDLECFNQWVNELKENNYLHNHTRMWFASIWIFTLELPWQLGAEFFMKHLYD 174 Query: 383 GDLASNNGGWQWAAS 397 GD ASN GW+W A Sbjct: 175 GDAASNTLGWRWVAG 189 >gi|311743861|ref|ZP_07717667.1| deoxyribodipyrimidine photolyase family protein [Aeromicrobium marinum DSM 15272] gi|311312991|gb|EFQ82902.1| deoxyribodipyrimidine photolyase family protein [Aeromicrobium marinum DSM 15272] Length = 416 Score = 67.0 bits (162), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 51/168 (30%), Positives = 72/168 (42%), Gaps = 22/168 (13%) Query: 240 QGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYP 299 +G S++SPY+ G+L W+ + + P S + +EL+W+E+ RHL A Sbjct: 72 RGASRMSPYIRHGLLDLPTVWDAVTD-------APASDRRRYRDELLWQEYARHLYARL- 123 Query: 300 SVCMGKP--FIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMIT 357 +P F P + D + A R+L GW+ N+ RM Sbjct: 124 GTATAEPLRFDPPRPAADPQWDEQMA-----------CTAAVRRELKDDGWLVNQTRMWW 172 Query: 358 ASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPY 405 AS WR GE+ F LLDG A+N GWQW TG PY Sbjct: 173 ASHWTVRHGRHWRDGEDDFFRHLLDGSRAANRLGWQWTVGTGTGK-PY 219 >gi|15558998|gb|AAL02087.1|AF348456_1 cryptochrome 1 [Cucumis melo] Length = 61 Score = 67.0 bits (162), Expect = 7e-09, Method: Composition-based stats. Identities = 29/59 (49%), Positives = 41/59 (69%) Query: 380 LLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQ 438 LLD DL S+ GWQ+ + T DS + RI NP ++G +FDP G ++R WLPEL+ +PT+ Sbjct: 3 LLDADLESDALGWQYISGTLPDSREFDRIDNPQLEGYKFDPNGEYVRRWLPELSRLPTE 61 >gi|114769242|ref|ZP_01446868.1| DNA photolyase-like protein [alpha proteobacterium HTCC2255] gi|114550159|gb|EAU53040.1| DNA photolyase-like protein [alpha proteobacterium HTCC2255] Length = 418 Score = 66.6 bits (161), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 50/187 (26%), Positives = 85/187 (45%), Gaps = 11/187 (5%) Query: 277 GAFSWLNELIWREFYRHLMAFYPSVCM--GKPFIPWTEKIEWN---KDSHLLQAWKQGYT 331 A ++ E+ WR +++ + +P+V I K+E N K+S++ G T Sbjct: 86 SAMKFIQEVFWRGYFKGWLEQHPTVWSHHNDKLIKEYAKLENNRFVKESYMSAV--NGET 143 Query: 332 GFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGG 391 G D QL + G++HN +RM AS V L + +G ++FM L+D D ASN Sbjct: 144 GIECFDFWCEQLKSTGYLHNHVRMWFASIWVFTLKLPMELGADFFMLHLIDADAASNTLS 203 Query: 392 WQWAASTGNDSVPY-FRIFN-PTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAP--HSWL 447 W+W + Y R N +F+P G + + P + N+ + P H + Sbjct: 204 WRWVSGLHTKGKAYAARASNIEKFTNGQFNPSGQLVENIEPLIENIDHPLVSLPQLHQSI 263 Query: 448 DKNDLSL 454 +K+ + L Sbjct: 264 EKDAILL 270 >gi|254461840|ref|ZP_05075256.1| conserved hypothetical protein [Rhodobacterales bacterium HTCC2083] gi|206678429|gb|EDZ42916.1| conserved hypothetical protein [Rhodobacteraceae bacterium HTCC2083] Length = 419 Score = 66.6 bits (161), Expect = 8e-09, Method: Compositional matrix adjust. Identities = 53/207 (25%), Positives = 90/207 (43%), Gaps = 6/207 (2%) Query: 281 WLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQ---GYTGFPIID 337 +++E+ WR +++ + +P+V + KD L + G TG D Sbjct: 90 FVHEVFWRTYFKGWLEHHPTVWSAYQAGLLRQLKSAGKDRRLAANYAAAMAGETGIDGFD 149 Query: 338 AAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAAS 397 ++L T G++HN RM AS + L + W +G ++F+ L+DGD ASN W+W A Sbjct: 150 DWTKELLTTGYLHNHARMWFASIWIFTLGLPWELGADFFLRHLMDGDPASNTLAWRWVAG 209 Query: 398 TGNDSVPYF-RIFNPT-IQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLN 455 PY R+ N + +RF P P Q P++ +++ + Sbjct: 210 IQTKGRPYVARVSNISKFTDQRFSPLHQLNTQVEPLSEEADHQRHPLPNA-ATSAEITGD 268 Query: 456 YPLPIVDHKKACHHTLNQYYAAKKQSL 482 Y L + + TL +AAK +L Sbjct: 269 YLLLVTEDDMQVEETLPHPHAAKIGAL 295 >gi|71083003|ref|YP_265722.1| DNA photolyase-like protein [Candidatus Pelagibacter ubique HTCC1062] gi|71062116|gb|AAZ21119.1| DNA photolyase-like protein [Candidatus Pelagibacter ubique HTCC1062] Length = 380 Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 50/197 (25%), Positives = 94/197 (47%), Gaps = 15/197 (7%) Query: 207 MFPIGEQNALHILRKFCKEKVYYYVEQRDI---PAIQGT-SQLSPYLSIGVLSPRQCWNR 262 +F A+ L F ++ + Y + R+ P+ + S LSPY++ G+++ + N+ Sbjct: 2 IFEASRAKAVDKLNTFVEQNLSDYSKLRNFDFGPSNRSNVSCLSPYITHGIINELEVINK 61 Query: 263 LKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKI--EWNKDS 320 ++F + ++ E++W +++ + P V ++ +KI E+ + Sbjct: 62 SLKKF------SFANNEKFIQEVLWHVYWKGWLELRPDVW--SDYLIELDKIKKEFKNNQ 113 Query: 321 HLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQL 380 L A +G T + + +L ++HN RM AS + L + W++G E+FM L Sbjct: 114 SYLDA-TEGKTNVDCFNQWVSELKENNYLHNHTRMWFASIWIFTLELPWQLGAEFFMQHL 172 Query: 381 LDGDLASNNGGWQWAAS 397 DGD ASN GW+W A Sbjct: 173 YDGDAASNTLGWRWVAG 189 >gi|152967990|ref|YP_001363774.1| deoxyribodipyrimidine photolyase-like [Kineococcus radiotolerans SRS30216] gi|151362507|gb|ABS05510.1| Deoxyribodipyrimidine photolyase-like [Kineococcus radiotolerans SRS30216] Length = 371 Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 49/168 (29%), Positives = 69/168 (41%), Gaps = 16/168 (9%) Query: 237 PAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMA 296 P +G ++LSPY+ G+L W + P + +EL+W+E+ RHL A Sbjct: 35 PERRGATRLSPYVRHGLLPLPTVWAAAGD-------APARDRAKFRDELLWQEYARHLYA 87 Query: 297 -FYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRM 355 P+ F W ++ W Q + +L+ GW+ N+ RM Sbjct: 88 RLGPATARPLRFAAPVPAQPWEREP-----WPQDMA---CVATTTAELHEEGWLVNQTRM 139 Query: 356 ITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSV 403 AS DWR G LLDG A+N GWQWA TG V Sbjct: 140 WLASQYSVRAGADWREGAREMYRHLLDGSPAANRLGWQWAVGTGTGKV 187 >gi|294053665|ref|YP_003547323.1| DNA photolyase FAD-binding protein [Coraliomargarita akajimensis DSM 45221] gi|293612998|gb|ADE53153.1| DNA photolyase FAD-binding protein [Coraliomargarita akajimensis DSM 45221] Length = 399 Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 51/187 (27%), Positives = 81/187 (43%), Gaps = 11/187 (5%) Query: 215 ALHILRKFCKEKVYYYVEQRDI---PAIQGT-SQLSPYLSIGVLSPRQCWNRLKEEFVDL 270 AL L F Y E R+ P QG S+LSP++ +L + + E Sbjct: 9 ALAALGDFLPHAGRDYAEGRNTDPGPEQQGAVSRLSPWIRTRMLPEWYVISAVLERHS-- 66 Query: 271 LIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGY 330 S A +++E+ WR +++ + PS+ + + ++ D G Sbjct: 67 ----ASAASKYIDEVCWRTYWKGWLQLRPSIWKDY-LLARNDLLDQYADHPDYNNAISGQ 121 Query: 331 TGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNG 390 TG DA ++L +HN RM AS V L + W++G ++F+ LLDGD ASN Sbjct: 122 TGIDCFDAWAKELTETNQLHNHARMWYASIWVHSLKLPWQLGADWFLRHLLDGDPASNTL 181 Query: 391 GWQWAAS 397 W+W Sbjct: 182 SWRWVTG 188 >gi|254437730|ref|ZP_05051224.1| hypothetical protein OA307_2600 [Octadecabacter antarcticus 307] gi|198253176|gb|EDY77490.1| hypothetical protein OA307_2600 [Octadecabacter antarcticus 307] Length = 408 Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 33/78 (42%), Positives = 42/78 (53%) Query: 328 QGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLAS 387 G TG DA +L G++HN RM AS + L + WR+G ++F LLDGD AS Sbjct: 128 NGQTGIECFDARAMELVDTGYLHNHARMWFASIWIFTLGLPWRLGADFFYRHLLDGDAAS 187 Query: 388 NNGGWQWAASTGNDSVPY 405 N GW+WAA PY Sbjct: 188 NTLGWRWAAGLHTRGKPY 205 >gi|149916364|ref|ZP_01904884.1| deoxyribodipyrimidine photo-lyase, putative [Roseobacter sp. AzwK-3b] gi|149809818|gb|EDM69670.1| deoxyribodipyrimidine photo-lyase, putative [Roseobacter sp. AzwK-3b] Length = 407 Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 55/192 (28%), Positives = 82/192 (42%), Gaps = 17/192 (8%) Query: 215 ALHILRKFCKEKVYYYVEQRDIPAIQG----TSQLSPYLSIGVLSPRQCWNRLKEEFVDL 270 AL LR F + Y R+ G S LSPYL +L+ ++E + Sbjct: 17 ALDRLRVFAPKAGGDYARLRNYDLGPGRHSHVSTLSPYLRHRLLT--------EDEVLRT 68 Query: 271 LIKPKS--GAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWK- 327 ++ S A ++ E+ WR +++ + P+V +S L Q W Sbjct: 69 VLARHSPQAAEKFIQEVFWRSYWKGWLEMRPAVWTAYRAGLAAALNRTQVESGLRQRWSD 128 Query: 328 --QGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDL 385 G TG D +L G++HN RM AS V L + W +G ++F+ L DGD Sbjct: 129 ACNGQTGIDGFDHWAHELIQTGYLHNHARMWFASIWVFTLGLPWELGADFFLRHLHDGDP 188 Query: 386 ASNNGGWQWAAS 397 ASN GW+W A Sbjct: 189 ASNTLGWRWVAG 200 >gi|318041065|ref|ZP_07973021.1| deoxyribodipyrimidine photo-lyase [Synechococcus sp. CB0101] Length = 251 Score = 65.1 bits (157), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 75/282 (26%), Positives = 116/282 (41%), Gaps = 61/282 (21%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M+ +VW R DLR++D+ AL AC+ V+ VF+ + + + F+ +L Sbjct: 1 MACTVVWFRRDLRLSDHAALSEACNQ--GAVLPVFVLDRDLLFHPETAVARVAFMLNNLQ 58 Query: 67 QVQKSLSQKGI------------VFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEI 114 + L Q+G + Q Q S D I DS L RV Sbjct: 59 ALDADLRQRGGRLLIRCGDPAEQLLQVVQLSGADGVIAHTDSERLVGRV----------- 107 Query: 115 NEVRRDKLLEKRLQ-HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQAD 173 RD + + L HR+ + + P G A Y+ + + Q + Sbjct: 108 ----RDARVSRTLAAHRIPLRWVE-----PAG-----ACGELMAYSGWSRQWHQAMASP- 152 Query: 174 LRSLPVPAIRLTGPVTPSNIPRFFDYPFQAID---------PMFPIGEQNALHILRKFCK 224 +LP P R+ P S +P D P +++ P+ P G AL L +FC+ Sbjct: 153 --ALPAPE-RVVVPPPSSALP---DTPVPSLEALGLRPDAKPIPPGGTAAALKRLEQFCE 206 Query: 225 ---EKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRL 263 + YY+ + P+ + T+ LSPYL GV+SPRQC RL Sbjct: 207 GSASRSYYW--ELSYPSAKVTTGLSPYLKFGVISPRQCLQRL 246 >gi|123966755|ref|YP_001011836.1| DNA photolyase-like protein [Prochlorococcus marinus str. MIT 9515] gi|123201121|gb|ABM72729.1| DNA photolyase-like protein [Prochlorococcus marinus str. MIT 9515] Length = 378 Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 55/227 (24%), Positives = 101/227 (44%), Gaps = 28/227 (12%) Query: 222 FCKEKVYYYVEQRDI----PAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSG 277 F + K+ Y + R+ + S+LSPY+S +L + +K+++ I Sbjct: 14 FLENKIQNYEKFRNFDYGPENVSSVSKLSPYVSHRILLEYELIEEVKKKYQSQKINK--- 70 Query: 278 AFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQ---GYTGFP 334 ++ E+ WR +++ M P+V W + I + +A+++ G T Sbjct: 71 ---FIEEIYWRIYWKGWMENRPNV--------WVDFISEKNFKYDFEAYEKAINGDTDLS 119 Query: 335 IIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQW 394 ++ + +L T ++HN RM AS + + + W +G +F L DGD ASN W+W Sbjct: 120 FFNSWVNELKTHNYLHNHTRMWFASTWIFNFGLPWELGANFFFKHLYDGDSASNILSWRW 179 Query: 395 AASTGNDSVPYFRIFNPT----IQGKRFDPQGTFIRH-WLPELNNVP 436 A Y +F+P+ RF+ + + +L ELN +P Sbjct: 180 VAGLQTKGKQY--LFSPSNLRKFSNNRFNVEKINNKQIFLEELNQIP 224 >gi|242812722|ref|XP_002486016.1| DNA photolyase, putative [Talaromyces stipitatus ATCC 10500] gi|218714355|gb|EED13778.1| DNA photolyase, putative [Talaromyces stipitatus ATCC 10500] Length = 356 Score = 63.5 bits (153), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 31/77 (40%), Positives = 44/77 (57%), Gaps = 1/77 (1%) Query: 367 VDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIR 426 V W G E F L+D + ASN G W W + T S Y+R ++P G+R+DP G F+R Sbjct: 260 VSWEQGVEVFQEWLIDHEEASNVGNWMWLSCTAFFSQ-YYRCYSPIAFGRRWDPNGDFVR 318 Query: 427 HWLPELNNVPTQYIHAP 443 + PEL + +YI+ P Sbjct: 319 RYCPELKDYDKKYIYEP 335 >gi|319993041|emb|CBY94069.1| cryptochrome [Fagus sylvatica] Length = 126 Score = 63.5 bits (153), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 32/64 (50%), Positives = 41/64 (64%), Gaps = 6/64 (9%) Query: 405 YFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIH----APHSWLDKNDLSL--NYPL 458 + RI NP QG +FDP G ++R WLPEL +PT++IH AP S L + L NYPL Sbjct: 3 FDRIDNPQFQGYKFDPNGEYVRRWLPELARLPTEWIHHPWNAPESVLHAAGIELGSNYPL 62 Query: 459 PIVD 462 PIV+ Sbjct: 63 PIVE 66 >gi|209965665|ref|YP_002298580.1| hypothetical protein RC1_2382 [Rhodospirillum centenum SW] gi|209959131|gb|ACI99767.1| conserved hypothetical protein [Rhodospirillum centenum SW] Length = 484 Score = 63.5 bits (153), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 59/224 (26%), Positives = 88/224 (39%), Gaps = 15/224 (6%) Query: 208 FPIGEQNALHILRKFCKEKVYYYVEQRD---IPAIQG-TSQLSPYLSIGVLSPRQCWNRL 263 FP L L F Y +R+ PA +G S L PY+ +++ + + Sbjct: 66 FPPRRDAGLARLHAFLPRAGQRYAAERNHDRGPADRGNVSGLGPYVRHRLVTEAEVIRHV 125 Query: 264 KEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLL 323 L + A ++ E WR +++ + P V + ++D L Sbjct: 126 ------LDVHSFGAAEKFIQEQFWRTYWKGWLELRPQVWRDWLAGVAEARRRLDRDPGLH 179 Query: 324 QAWKQ---GYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQL 380 + G TG DA +L G++HN RM AS + L + W +G E+F+ L Sbjct: 180 DCYTDAVAGRTGIDGFDAWAAELRETGYLHNHARMWFASIWIFTLRLPWELGAEFFLRHL 239 Query: 381 LDGDLASNNGGWQWAASTGNDSVPYF--RIFNPTIQGKRFDPQG 422 LDGD ASN W+W Y R T RFDP G Sbjct: 240 LDGDPASNTLSWRWVGGLQTVGKTYLARRDNIRTYTEGRFDPVG 283 >gi|15559000|gb|AAL02088.1|AF348457_1 cryptochrome 2 [Cucumis melo] Length = 61 Score = 63.5 bits (153), Expect = 8e-08, Method: Composition-based stats. Identities = 28/59 (47%), Positives = 39/59 (66%) Query: 380 LLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQ 438 LLD DL S+ GWQ+ + + D R+ +P IQG ++DP G +IRHWLPEL +PT+ Sbjct: 3 LLDADLESDILGWQYISGSLPDGHELERLDDPQIQGSKYDPDGEYIRHWLPELARMPTE 61 >gi|78779842|ref|YP_397954.1| deoxyribodipyrimidine photo-lyase family protein [Prochlorococcus marinus str. MIT 9312] gi|78713341|gb|ABB50518.1| deoxyribodipyrimidine photo-lyase family protein (cryptochrome) [Prochlorococcus marinus str. MIT 9312] Length = 384 Score = 63.2 bits (152), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 50/187 (26%), Positives = 90/187 (48%), Gaps = 15/187 (8%) Query: 215 ALHILRKFCKEKVYYYVEQRDI---PAIQGT-SQLSPYLSIGVLSPRQCWNRLKEEFVDL 270 A ++ F K K+ Y + R+ P +G+ S+LSP+++ +LS N +K ++ Sbjct: 7 AQNVWDNFAKYKINDYSKLRNFDFGPNNEGSVSKLSPFITHRILSEYDLINDIKSKY--- 63 Query: 271 LIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGY 330 K K+ ++ E+ WR +++ M P V +T + + D L + G Sbjct: 64 --KIKNST-KFVEEIFWRVYWKGWMENRPKVWQ-----YFTLEKNLDFDYELYENAISGN 115 Query: 331 TGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNG 390 T ++ + +L ++HN RM AS + +L + W++G ++F L DGD ASN Sbjct: 116 TELDFFNSWVLELKQYNYLHNHTRMWFASTWIFNLGLPWQLGAKFFFKYLFDGDAASNLL 175 Query: 391 GWQWAAS 397 W+W A Sbjct: 176 SWRWVAG 182 >gi|126727584|ref|ZP_01743417.1| DNA photolyase-like protein [Rhodobacterales bacterium HTCC2150] gi|126703174|gb|EBA02274.1| DNA photolyase-like protein [Rhodobacterales bacterium HTCC2150] Length = 407 Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 36/125 (28%), Positives = 62/125 (49%), Gaps = 3/125 (2%) Query: 276 SGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWK---QGYTG 332 S A ++ E+ WR +++ + +PSV T + + ++ L + +G TG Sbjct: 76 STAMKFIQEVFWRGYFKGWLEQHPSVWNSYKQGVRTAQNRLHSNAELNADYIGAIEGRTG 135 Query: 333 FPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGW 392 D R+L G++HN RM AS + L + W +G ++F++ L+DGD ASN W Sbjct: 136 IACFDHWCRELVETGYLHNHARMWFASIWIFTLRLPWELGADFFLNHLIDGDSASNTLSW 195 Query: 393 QWAAS 397 +W Sbjct: 196 RWVGG 200 >gi|89055300|ref|YP_510751.1| deoxyribodipyrimidine photo-lyase family protein [Jannaschia sp. CCS1] gi|88864849|gb|ABD55726.1| deoxyribodipyrimidine photo-lyase family protein (cryptochrome) [Jannaschia sp. CCS1] Length = 403 Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 53/194 (27%), Positives = 88/194 (45%), Gaps = 18/194 (9%) Query: 209 PIGEQNALHILRKFCKEKVYYYVEQR--DIPAIQG---TSQLSPYLSIGVLSPRQCWNRL 263 P L L +F Y +R D+P QG SQLSPYL +++ + + Sbjct: 6 PPTRAAGLERLARFVPAAGRDYAAKRNYDLPG-QGHPHVSQLSPYLRHRLVTEEEVLEAV 64 Query: 264 KEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLL 323 E + + A ++ E+ WR +++ + PS + + ++ + + Sbjct: 65 LERYS------LANAEKFVAEVCWRTYWKGWLELRPSA-----WAEYRRDLDHIDRTGVA 113 Query: 324 QAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDG 383 +A + G T +A R+L G++HN RM AS + L + W+ G ++FM LLDG Sbjct: 114 KA-EAGQTDIDAFNAWTRELVETGYLHNHARMWFASIWIFTLGLPWQAGADFFMRHLLDG 172 Query: 384 DLASNNGGWQWAAS 397 D ASN W+W A Sbjct: 173 DPASNTLSWRWVAG 186 >gi|108803508|ref|YP_643445.1| deoxyribodipyrimidine photo-lyase type II [Rubrobacter xylanophilus DSM 9941] gi|108764751|gb|ABG03633.1| Deoxyribodipyrimidine photo-lyase type II [Rubrobacter xylanophilus DSM 9941] Length = 464 Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 84/365 (23%), Positives = 147/365 (40%), Gaps = 39/365 (10%) Query: 11 LVWLRNDLRITDNKALYAACHNSDA---KVIAVFIAT---PEQWRQHGISARQSHFIYAS 64 L W++ R N AL A ++A ++ VF T PE + R F+ Sbjct: 27 LYWMQASQRAEHNHALEYAVRQANALGRSLVCVFGLTDGYPE------ANLRHYAFMLEG 80 Query: 65 LLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLE 124 L V+K L ++GI F + S + ++E +R + +R Y ++VR + + Sbjct: 81 LADVEKGLRRRGIGFAVRRGSPDEVALE------AGRRAALIVTDRGYLRHQVRWRENVA 134 Query: 125 KRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTP-FRKALIQNLVQADLRSLPVPAIR 183 RV + VL+P + + + + P + L + LV +L P+ Sbjct: 135 AEAGCRVT--QVESDVLVPVETASDRREYAARTFRPRVSRHLERFLVGLGTTALRRPSAG 192 Query: 184 LT-GPVTPSNIPRFF-----DYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIP 237 G + S+ R D + ++ G + A +LR+F +E + Y RD P Sbjct: 193 AGLGGLDLSDPGRVLEELDLDRGVGPVGHLYRGGTRAAKRLLRRFLEEGLPGYASGRDQP 252 Query: 238 AIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNEL-IWREFYRHLMA 296 G S +S YL G +SP R + P+ ++L EL + RE + + Sbjct: 253 HAGGVSHMSKYLHFGHISPLYVALRARGSGA-----PEEDVGAFLEELVVRRELAVNFVR 307 Query: 297 FYPSVCMGKPFIPWTEKI--EWNKDS----HLLQAWKQGYTGFPIIDAAMRQLNTIGWMH 350 + P+ W E DS + + ++ T P +AAM ++ G++H Sbjct: 308 YTPNYDSYSCLPEWARSTLEEHRGDSRERVYTRRQLEEAATHDPYWNAAMVEMRHTGYLH 367 Query: 351 NRLRM 355 N +RM Sbjct: 368 NHMRM 372 >gi|298162610|gb|ADI59672.1| cryptochrome [Haliotis discus hannai] Length = 96 Score = 62.4 bits (150), Expect = 1e-07, Method: Composition-based stats. Identities = 32/77 (41%), Positives = 42/77 (54%), Gaps = 1/77 (1%) Query: 309 PWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK-DLLV 367 P +I W+++ L W +G TGFP IDA M QL GW+H+ R A FL + DL + Sbjct: 17 PICVQIPWDRNPEALAKWAEGRTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWI 76 Query: 368 DWRIGEEYFMSQLLDGD 384 W G + F LLD D Sbjct: 77 SWEEGMKVFEELLLDAD 93 >gi|218506724|ref|ZP_03504602.1| deoxyribodipyrimidine photo-lyase protein [Rhizobium etli Brasil 5] Length = 191 Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 46/154 (29%), Positives = 76/154 (49%), Gaps = 9/154 (5%) Query: 117 VRRDKLLEKRLQHR-----VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQ 171 +RR R++H + KSF +L P ++ + Y+VYTPF +AL ++ + Sbjct: 14 IRRASPSTPRIEHELEKQAIEVKSFGGQLLHEPSRLMTGSGTPYRVYTPFWRALESSIER 73 Query: 172 A--DLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAID--PMFPIGEQNALHILRKFCKEKV 227 D+ S A +L G + P A + ++ GE+ A LR F ++++ Sbjct: 74 EPLDIPSKLQLASKLPGSENLESWKLLSTQPDWASNFADLWTPGEEGAQEKLRTFIEDRL 133 Query: 228 YYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWN 261 Y E RD PA TS LSP+L++G +SP + W+ Sbjct: 134 DGYKENRDYPAKPATSMLSPHLALGEISPARIWD 167 >gi|258405445|ref|YP_003198187.1| deoxyribodipyrimidine photolyase [Desulfohalobium retbaense DSM 5692] gi|257797672|gb|ACV68609.1| deoxyribodipyrimidine photolyase [Desulfohalobium retbaense DSM 5692] Length = 469 Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 109/459 (23%), Positives = 171/459 (37%), Gaps = 72/459 (15%) Query: 13 WLRNDLRITDNKALYAACH---NSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69 W+ D R+ DN AL A H A +I VF P G + R F+ L QV Sbjct: 29 WMSRDQRLHDNWALLQAQHMARTRQAPLIIVFCLVPSY---SGGARRHFDFMLTGLRQVA 85 Query: 70 KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH 129 S ++ GI F +D L +C + + + + +R +++ QH Sbjct: 86 DSAAKLGIPFV---LLTGEDPPGELAGFCRTHAIGTVVMD----FDPLR----TKQQWQH 134 Query: 130 RVI------CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQ-----ADLRSLP 178 C D ++P Q Y T R L + L + +L P Sbjct: 135 TFAGHWEGECLEVDAHNVVP--CRWASEKQEYAART-IRPKLQRQLPEFLDPFPELVPHP 191 Query: 179 VPAIRLTGPVTPS----NIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQR 234 VP G + P R P + GE+ AL + R+F + Y E+R Sbjct: 192 VP---WRGSLLPEPDWEAASRSLAAPEYGPPLSWSSGEETALDLAREFIASGLSAYAEKR 248 Query: 235 DIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHL 294 + P S LSPYL G ++P+ R+ D P +L EL+ R Sbjct: 249 NDPTAGAVSGLSPYLHFGQIAPQ----RVALMARDANWAPAESREGFLEELVIRRELAEN 304 Query: 295 MAFYPSV--CMGKPFIPWTEK-IEWNKDSH-----LLQAWKQGYTGFPIIDAAMRQLNTI 346 FY V C G W ++ ++ ++ H + W+ T P+ +AA +++ Sbjct: 305 FCFYNPVYDCFGG-LPAWAQQTLDDHRGDHREVVYTFEQWEAARTHDPLWNAAQQEMVQT 363 Query: 347 GWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQL--------LDGDLASNNGGWQWAAST 398 G MH +RM + K +L +W E +S LDG + G W+ Sbjct: 364 GKMHGYMRM----YWAKKIL-EWSASPEEALSTAITLNDRYELDGRDPNGYTGVLWSIGG 418 Query: 399 GND----SVPYF---RIFNPTIQGKRFDPQGTFIRHWLP 430 +D P + R N ++FD Q +IR + P Sbjct: 419 VHDRPWKERPVYGKVRYMNDRGAARKFDVQ-AYIRRFFP 456 >gi|302793095|ref|XP_002978313.1| hypothetical protein SELMODRAFT_108462 [Selaginella moellendorffii] gi|300154334|gb|EFJ20970.1| hypothetical protein SELMODRAFT_108462 [Selaginella moellendorffii] Length = 345 Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 76/314 (24%), Positives = 126/314 (40%), Gaps = 38/314 (12%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHG-----ISARQSHFIYA 63 +VW RNDLR+ DN+AL AA + VI V+ P+ + + ++ F+ Sbjct: 21 ASIVWFRNDLRVHDNEAL-AAANKESLSVIPVYCFDPKDYGKSASGFDKTGPYRAKFLVE 79 Query: 64 SLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVR-RDKL 122 + ++ +L ++G + +E L + L+ +++ E+ DK+ Sbjct: 80 CVANLRDNLRERG----SELVVRIGNPVEVLSTIAKAVGADGLYAHQEVSSEELGMEDKV 135 Query: 123 LEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQA------DLRS 176 V K F S L + M Y FR + V+A L+ Sbjct: 136 TSALKDQNVDVKFFWGSTLFHVDDLPFKVEDMPSNYGGFRDKVKDVQVRAATEAPKQLKG 195 Query: 177 LPVPAIRLTGPVTPSNIPRFFDYPFQAIDPM-------FPIGEQNALHILRKFC--KEKV 227 LP G V +IP + + GE AL L+ F Sbjct: 196 LPS-----QGDVKAGDIPSLQELGLSPVSAAGQHKRNRMIGGEVEALKRLKSFSLVSPPP 250 Query: 228 YYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKE---EFV-DLLIKPKSG--AFSW 281 ++ I +S++SP+L++G LSPR+ + LK+ FV D L+ SG W Sbjct: 251 SKGGKENSIYGANFSSKISPWLAMGCLSPRKMFEDLKKTTSRFVLDSLVASTSGDSGMQW 310 Query: 282 LN-ELIWREFYRHL 294 L EL+WR+F+R + Sbjct: 311 LVFELLWRDFFRFV 324 >gi|326403400|ref|YP_004283481.1| hypothetical protein ACMV_12520 [Acidiphilium multivorum AIU301] gi|325050261|dbj|BAJ80599.1| hypothetical protein ACMV_12520 [Acidiphilium multivorum AIU301] Length = 393 Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 35/96 (36%), Positives = 49/96 (51%), Gaps = 2/96 (2%) Query: 329 GYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASN 388 G TG D+ R++ ++HN RM AS + L + W +G ++F+ LLDGD+ASN Sbjct: 126 GRTGIDCFDSWAREIVARNYLHNHARMWFASIWIFTLRLPWELGADFFLRHLLDGDIASN 185 Query: 389 NGGWQWAASTGNDSVPYF-RIFN-PTIQGKRFDPQG 422 W+W A Y R N G RFDP+G Sbjct: 186 TLSWRWVAGLHTPGKHYLARAENIARFTGGRFDPRG 221 >gi|148259631|ref|YP_001233758.1| deoxyribodipyrimidine photolyase-like protein [Acidiphilium cryptum JF-5] gi|146401312|gb|ABQ29839.1| deoxyribodipyrimidine photo-lyase family protein (cryptochrome) [Acidiphilium cryptum JF-5] Length = 396 Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 35/96 (36%), Positives = 49/96 (51%), Gaps = 2/96 (2%) Query: 329 GYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASN 388 G TG D+ R++ ++HN RM AS + L + W +G ++F+ LLDGD+ASN Sbjct: 129 GQTGIDCFDSWAREIVARNYLHNHARMWFASIWIFTLRLPWELGADFFLRHLLDGDIASN 188 Query: 389 NGGWQWAASTGNDSVPYF-RIFN-PTIQGKRFDPQG 422 W+W A Y R N G RFDP+G Sbjct: 189 TLSWRWVAGLHTPGKHYLARAENIARFTGGRFDPRG 224 >gi|116787609|gb|ABK24574.1| unknown [Picea sitchensis] gi|224284157|gb|ACN39815.1| unknown [Picea sitchensis] Length = 526 Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 76/332 (22%), Positives = 137/332 (41%), Gaps = 55/332 (16%) Query: 11 LVWLRNDLRITDNKALYAACHNSDA-KVIAVFIATPEQWRQHGISAR--------QSHFI 61 +VW RNDLR+ DN+AL +A N +A V+ V+ P R +G S+ ++ F+ Sbjct: 191 IVWFRNDLRVHDNEALSSA--NKEALSVLPVYCFDP---RDYGKSSSGFDKTGPFRATFL 245 Query: 62 YASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDK 121 + ++ +L ++G + +E S L+ +++ E+ ++ Sbjct: 246 LECVANLRANLRERGSDLVVRIGRPEEVLVELAKSIG----ADALYAHQEVSHEEIATEE 301 Query: 122 LLEKRLQHR-VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKAL----IQNLVQ--ADL 174 ++ L+ V K F S L P + M Y FR+ + ++ +++ L Sbjct: 302 KIKSSLEEEGVETKFFWGSTLYHPEDLPFKLQDMPSNYGGFRERVQRLSVRQIIKDPEQL 361 Query: 175 RSLPVPAIRLTGPVTPSNIPRFFDYPFQ---------AIDPMFPIGEQNALHILRKF--- 222 + LP G V P +P D A++ GE AL L++F Sbjct: 362 KGLPT-----RGDVEPGKVPSLLDLGLNPNFGQDGKTAVNASLTGGESEALQRLKRFAVE 416 Query: 223 CKEKVYYYVEQRDIPAIQG---TSQLSPYLSIGVLSPRQCWNRL---------KEEFVDL 270 C+E+ + ++ G + ++SP+L++G LSPR + L Sbjct: 417 CREQPNKLGKDGSGESLYGANFSCKISPWLAMGCLSPRYMFEELKKSEKISISSSLGKSS 476 Query: 271 LIKPKSGAFSWLN-ELIWREFYRHLMAFYPSV 301 G +WL EL+WR+F+R + Y S Sbjct: 477 GADSGQGGLNWLKFELLWRDFFRFITKKYGSA 508 >gi|238603470|ref|XP_002395956.1| hypothetical protein MPER_03894 [Moniliophthora perniciosa FA553] gi|215467586|gb|EEB96886.1| hypothetical protein MPER_03894 [Moniliophthora perniciosa FA553] Length = 114 Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 32/67 (47%), Positives = 38/67 (56%), Gaps = 1/67 (1%) Query: 325 AWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD-LLVDWRIGEEYFMSQLLDG 383 AWK+G TGFP IDA MRQL GW+H+ R A FL + + W G E F L+D Sbjct: 33 AWKEGRTGFPWIDAIMRQLRQEGWIHHLARHSVACFLTRGQCYISWERGAEVFDEYLIDW 92 Query: 384 DLASNNG 390 D SN G Sbjct: 93 DPCSNPG 99 >gi|260431372|ref|ZP_05785343.1| deoxyribodipyrimidine photo-lyase family protein [Silicibacter lacuscaerulensis ITI-1157] gi|260415200|gb|EEX08459.1| deoxyribodipyrimidine photo-lyase family protein [Silicibacter lacuscaerulensis ITI-1157] Length = 461 Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 59/228 (25%), Positives = 92/228 (40%), Gaps = 35/228 (15%) Query: 214 NALHILRKFCKEKVYYYVEQRD----IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVD 269 N L L++F +Y R+ S LSP+L +++ + + Sbjct: 70 NGLARLKQFVGRTGRHYASTRNYDFGTERRSNVSGLSPWLRHRLITETEVLAAV------ 123 Query: 270 LLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWT-------EKIEWNKDSHL 322 L + A ++ E+ WR +++ + PSV WT E D Sbjct: 124 LASHNFNAAEKFVQEVFWRTYFKGWLEQRPSV--------WTLYQRDLSHACERLSDDDC 175 Query: 323 LQA----WKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMS 378 L+A G TG D +R+L G++HN RM AS + L + W++G ++F+ Sbjct: 176 LRARFSDAVNGNTGIDCFDHWVRELLVTGYLHNHARMWFASIWIFTLRLPWQLGADFFLR 235 Query: 379 QLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGK----RFDPQG 422 LLDGD ASN W+W Y + P K RF P+G Sbjct: 236 HLLDGDPASNTLSWRWVGGLHTKGKTY--LARPDNIAKYTEGRFQPKG 281 >gi|15559012|gb|AAL02094.1|AF348463_1 cryptochrome 1 [Musa acuminata] Length = 61 Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 28/59 (47%), Positives = 37/59 (62%) Query: 380 LLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQ 438 LLD DL S+ GWQ+ + + D RI NP +G +FDP G ++R WLPEL +PTQ Sbjct: 3 LLDADLESDALGWQYISGSLPDGRELDRIDNPQFEGYKFDPHGEYVRRWLPELARLPTQ 61 >gi|114765681|ref|ZP_01444780.1| DNA photolyase-like protein [Pelagibaca bermudensis HTCC2601] gi|114542003|gb|EAU45037.1| DNA photolyase-like protein [Roseovarius sp. HTCC2601] Length = 401 Score = 61.2 bits (147), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 51/193 (26%), Positives = 84/193 (43%), Gaps = 15/193 (7%) Query: 213 QNALHILRKFCKEKVYYYVEQRDIPAIQG----TSQLSPYLSIGVLS-PRQCWNRLKEEF 267 + L L F Y E R G S LSPYL +++ P ++ Sbjct: 9 EAGLRRLEAFRPHMGRDYAELRGFDLGAGGHVHVSGLSPYLRRRLVTEPEVISTAVETHG 68 Query: 268 VDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWK 327 +D GA ++++E++WR +++ + P V + ++D+ L Sbjct: 69 ID-------GAGTFVSEVLWRSYFKGWLEQRPQVWNDYRDGLRRDLAALDEDADLRDRVA 121 Query: 328 Q---GYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGD 384 + G TG +D +L G++HN RM AS + + WR+G ++F+ LLDGD Sbjct: 122 RVCAGRTGLAGVDDWAAELVQTGYLHNHARMWFASIWIFTRGLPWRLGADFFLRHLLDGD 181 Query: 385 LASNNGGWQWAAS 397 ASN W+W A Sbjct: 182 PASNTCSWRWVAG 194 >gi|260586482|gb|ACX46123.1| cryptochrome 4 [Sylvia borin] Length = 78 Score = 61.2 bits (147), Expect = 4e-07, Method: Composition-based stats. Identities = 33/78 (42%), Positives = 41/78 (52%), Gaps = 1/78 (1%) Query: 314 IEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK-DLLVDWRIG 372 I W KD+ L WK TGFP IDA M QL GW+H+ R A FL + L + W G Sbjct: 1 ICWYKDAERLHKWKTAQTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGHLWISWEEG 60 Query: 373 EEYFMSQLLDGDLASNNG 390 + F L+D D + N G Sbjct: 61 MKVFEELLIDADYSINAG 78 >gi|302765677|ref|XP_002966259.1| hypothetical protein SELMODRAFT_85247 [Selaginella moellendorffii] gi|300165679|gb|EFJ32286.1| hypothetical protein SELMODRAFT_85247 [Selaginella moellendorffii] Length = 345 Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 73/314 (23%), Positives = 125/314 (39%), Gaps = 38/314 (12%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHG-----ISARQSHFIYA 63 +VW RNDLR+ DN+AL AA + VI V+ P+ + + ++ F+ Sbjct: 21 ASIVWFRNDLRVHDNEAL-AAANKESLSVIPVYCFDPKDYGKSASGFDKTGPYRAKFLVE 79 Query: 64 SLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVR-RDKL 122 + ++ +L ++G + +E L + L+ +++ E+ DK+ Sbjct: 80 CVANLRDNLRERG----SELVVRIGNPVEVLSTIAKAVGADGLYAHQEVSSEELGMEDKV 135 Query: 123 LEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQA------DLRS 176 V K F S L + M Y FR + V+A L+ Sbjct: 136 TSALKDQNVDVKFFWGSTLFHVDDLPFKVEDMPSNYGGFRDKVKDVQVRAATEAPKQLKG 195 Query: 177 LPVPAIRLTGPVTPSNIPRFFDYPFQAIDPM-------FPIGEQNALHILRKFC--KEKV 227 LP G V +IP + + GE AL L+ F Sbjct: 196 LPS-----QGDVKAGDIPSLQELGLSPVSAAGQHKRNRMIGGEVEALKRLKSFSLVSPPP 250 Query: 228 YYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEE----FVDLLIKPKSG--AFSW 281 ++ I +S++SP+L++G LSPR+ + LK+ +D ++ SG W Sbjct: 251 SKGGKENSIYGANFSSKISPWLAMGCLSPRKMFEDLKKTTSRFVLDSVVASTSGDSGMQW 310 Query: 282 LN-ELIWREFYRHL 294 L EL+WR+F+R + Sbjct: 311 LVFELLWRDFFRFV 324 >gi|157413923|ref|YP_001484789.1| DNA photolyase-like protein [Prochlorococcus marinus str. MIT 9215] gi|157388498|gb|ABV51203.1| DNA photolyase-like protein [Prochlorococcus marinus str. MIT 9215] Length = 384 Score = 60.8 bits (146), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 59/233 (25%), Positives = 107/233 (45%), Gaps = 22/233 (9%) Query: 215 ALHILRKFCKEKVYYYVEQRDI---PAIQGT-SQLSPYLSIGVLSPRQCWNRLKEEFVDL 270 A + F K K+ Y + R+ P + + S+LSP+++ +LS N +K ++ Sbjct: 7 AQNTWENFAKYKINDYAKLRNFDFGPNNESSVSKLSPFITHRILSEYDLINDIKSKY--- 63 Query: 271 LIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGY 330 K K+ ++ E+ WR +++ M P V + FI +EK + D L + G Sbjct: 64 --KSKNST-KFVEEIFWRVYWKGWMENRPKVW--ENFI--SEK-NLDFDYELYKKAINGN 115 Query: 331 TGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNG 390 T ++ + +L ++HN RM AS + +L + W++G ++F L DGD ASN Sbjct: 116 TEIDFFNSWVLELKQHNYLHNHTRMWFASTWIFNLGLPWQLGAKFFFKYLFDGDAASNLL 175 Query: 391 GWQWAASTGNDSVPYFRIFNPT----IQGKRFDPQGTFIRH-WLPELNNVPTQ 438 W+W Y +F+ + RF+ + + +L E N +P + Sbjct: 176 SWRWVGGLQTKGKQY--LFSSSNLRKFSNNRFNVEKIINKQIYLEESNQIPLE 226 >gi|15559002|gb|AAL02089.1|AF348458_1 cryptochrome 1a [Hordeum vulgare] Length = 61 Score = 60.8 bits (146), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 27/59 (45%), Positives = 38/59 (64%) Query: 380 LLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQ 438 LLD DL S+ GWQ+ + + DS I NP ++G +FDP G ++R WLPEL +PT+ Sbjct: 3 LLDADLESDALGWQYISGSLPDSRELDHIDNPQLEGYKFDPHGEYVRRWLPELARLPTE 61 >gi|238612106|ref|XP_002398132.1| hypothetical protein MPER_01320 [Moniliophthora perniciosa FA553] gi|215474046|gb|EEB99062.1| hypothetical protein MPER_01320 [Moniliophthora perniciosa FA553] Length = 228 Score = 60.8 bits (146), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 41/162 (25%), Positives = 78/162 (48%), Gaps = 5/162 (3%) Query: 13 WLR-NDLRITDNKALYAACHNSDAK---VIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 W+R DLRI+DN+AL A + + ++ +F+ +P+ + H AR+ F +L V Sbjct: 40 WMRMADLRISDNRALSLASAQAKEENIPLVVIFVISPQDYIAHDRGARRIDFTLRNLFCV 99 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128 + SL++ I ++ + S+ + N +YE++E+RRD + + Sbjct: 100 KDSLAKLPIPLHTFTEQTGENYRRPVISFLQDYSCNSFYANIEYEVDELRRDLKVCALAK 159 Query: 129 HRVICKSF-DDSVLLPPGSILNHALQMYKVYTPFRKALIQNL 169 + + F + ++ PG + A + Y VY+PF + I L Sbjct: 160 SKGMKAMFVHNKCIIEPGVVTTKANKAYAVYSPFERTWISKL 201 >gi|170782720|ref|YP_001711054.1| putative ATP-binding protein [Clavibacter michiganensis subsp. sepedonicus] gi|169157290|emb|CAQ02475.1| putative ATP-binding protein [Clavibacter michiganensis subsp. sepedonicus] Length = 408 Score = 60.5 bits (145), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 55/205 (26%), Positives = 86/205 (41%), Gaps = 33/205 (16%) Query: 207 MFPIGEQNALHILRKFCKEKVYYYVEQR--DIPAIQ-GTSQLSPYLSIGVLSPRQCWNRL 263 MF L L F Y R D+ A + S LSPYL +++ Sbjct: 1 MFIPTRAAGLEALHDFVDRAGPAYARDRNHDLGASRDNVSGLSPYLRHRLVT-------- 52 Query: 264 KEEFVDLLIKPKS--GAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSH 321 ++E V ++ S A ++ E+ WR +++ + P W + +D Sbjct: 53 EQEVVAAVLARHSLSAAEKFVQEVFWRTYWKGWLEQNPEA--------WRR---YRRDVE 101 Query: 322 LLQAWK---------QGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIG 372 L A G +G +DA +R+L G++HN RM AS + L + W++G Sbjct: 102 ELTAGDLPTGYLDAVGGRSGIDAMDAWVRELVETGYLHNHTRMWFASIWIFTLGLPWQLG 161 Query: 373 EEYFMSQLLDGDLASNNGGWQWAAS 397 ++F LLDGD ASN W+W A Sbjct: 162 ADFFHRHLLDGDAASNTLSWRWVAG 186 >gi|15559004|gb|AAL02090.1|AF348459_1 cryptochrome 1b [Hordeum vulgare] Length = 61 Score = 60.5 bits (145), Expect = 6e-07, Method: Composition-based stats. Identities = 27/59 (45%), Positives = 37/59 (62%) Query: 380 LLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQ 438 LLD DL S+ GWQ+ + + D RI NP +G +FDP G ++R WLPEL +PT+ Sbjct: 3 LLDADLESDALGWQYISGSLPDGRELDRIDNPQFEGYKFDPYGEYVRRWLPELARLPTE 61 >gi|254527101|ref|ZP_05139153.1| conserved hypothetical protein [Prochlorococcus marinus str. MIT 9202] gi|221538525|gb|EEE40978.1| conserved hypothetical protein [Prochlorococcus marinus str. MIT 9202] Length = 384 Score = 60.5 bits (145), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 53/187 (28%), Positives = 89/187 (47%), Gaps = 15/187 (8%) Query: 215 ALHILRKFCKEKVYYYVEQRDI---PAIQGT-SQLSPYLSIGVLSPRQCWNRLKEEFVDL 270 A I F K K+ Y R+ P + + S+LSP+++ +LS N +K ++ Sbjct: 7 AQSIWDNFAKCKINDYARLRNFDFGPNNESSVSKLSPFITHRILSEYDLINDIKSKY--- 63 Query: 271 LIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGY 330 K K+ ++ E+ WR +++ M P V + FI +EK N D L + G Sbjct: 64 --KIKNST-KFVEEIFWRVYWKGWMENRPKVW--ENFI--SEK-NLNFDYELYKKAINGN 115 Query: 331 TGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNG 390 T ++ + +L ++HN RM AS + +L + W++G ++F L DGD ASN Sbjct: 116 TEIDFFNSWVLELKQHNYLHNHTRMWFASTWIFNLGLPWQLGAKFFFKYLFDGDAASNLL 175 Query: 391 GWQWAAS 397 W+W Sbjct: 176 SWRWVGG 182 >gi|323193108|gb|EFZ78328.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp. enterica serovar Montevideo str. 609458-1] Length = 45 Score = 60.5 bits (145), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 25/45 (55%), Positives = 34/45 (75%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQH 51 M HLVW R DLR+ DN AL AAC ++ A+V+A++I+TP QW+ H Sbjct: 1 MPTHLVWFRRDLRLQDNLALAAACRDASARVLALYISTPAQWQAH 45 >gi|213584005|ref|ZP_03365831.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp. enterica serovar Typhi str. E98-0664] Length = 46 Score = 60.1 bits (144), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 25/45 (55%), Positives = 34/45 (75%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQH 51 M HLVW R DLR+ DN AL AAC ++ A+V+A++I+TP QW+ H Sbjct: 1 MPTHLVWFRRDLRLQDNLALAAACRDASARVLALYISTPAQWQAH 45 >gi|66910424|gb|AAH97079.1| Cry4 protein [Danio rerio] Length = 418 Score = 60.1 bits (144), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 32/75 (42%), Positives = 41/75 (54%), Gaps = 10/75 (13%) Query: 405 YFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSL--------NY 456 Y RIF P G+R DPQG ++R +LP L N P+QYI+ P W D+ L +Y Sbjct: 266 YTRIFCPVRFGRRTDPQGEYLRKYLPVLKNFPSQYIYEP--WKAPEDVQLSAGCIIGKDY 323 Query: 457 PLPIVDHKKACHHTL 471 P PIV H +A L Sbjct: 324 PRPIVSHIEASQRNL 338 Score = 37.7 bits (86), Expect = 4.7, Method: Compositional matrix adjust. Identities = 29/91 (31%), Positives = 46/91 (50%), Gaps = 11/91 (12%) Query: 188 VTPSNIPRFFDYPFQA-------IDPMFPIGEQNALHILRKFCKEK--VYYYVEQRDIP- 237 VTP ++ R + P A + ++P GE +AL L K + + V + + R IP Sbjct: 180 VTPVDVDRVYAVPSLAHLGLQVEAEVLWPGGESHALQRLEKHFQSQGWVANFSKPRTIPN 239 Query: 238 -AIQGTSQLSPYLSIGVLSPRQCWNRLKEEF 267 + T+ LSPYLS+G LS R +++ F Sbjct: 240 SLLPSTTGLSPYLSLGCLSVRTFYHKYTRIF 270 >gi|224128470|ref|XP_002320340.1| predicted protein [Populus trichocarpa] gi|222861113|gb|EEE98655.1| predicted protein [Populus trichocarpa] Length = 424 Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 81/332 (24%), Positives = 138/332 (41%), Gaps = 60/332 (18%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISAR--------QSHFIY 62 +VW RNDLR+ DN+ L +A ++S V+ V+ P R +G S+ +++F+ Sbjct: 88 IVWFRNDLRVHDNECLNSASNDS-MSVLPVYCFDP---RDYGKSSSGFDKTGPYRANFLI 143 Query: 63 ASLLQVQKSLSQKG--IVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVR-R 119 S+ ++K+L +G +V + + L ++ +R+ +EV+ Sbjct: 144 ESVSDLRKNLQARGSDLVVRVGRPETV------LVELAKAIGADAVYAHREVSHDEVKAE 197 Query: 120 DKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKAL----IQNLVQA--D 173 DK+ E V K F S L + M Y F++ + I+ V+ + Sbjct: 198 DKIEEVMKDEGVEVKYFWGSTLYHLDDLPFKLEDMPSNYGGFKEKVQVLEIRKTVETLDE 257 Query: 174 LRSLPVPAIRLTGPVTPSNIPRFFDY---PFQ----AIDPMFPIGEQNALHILRKFCKE- 225 L+ LP G V P +IP D P Q + GE AL L+KF E Sbjct: 258 LKGLPS-----RGDVEPGDIPNLLDLGLNPAQDGKATANASMVGGEAEALQRLQKFAAEC 312 Query: 226 ----KVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLL---------- 271 I + ++SP+L++G +SPR ++ LK+ + Sbjct: 313 QAQPPKGTNGSHDSIYGANFSCKISPWLTVGCISPRSMFDELKKTAARTISGASNCGGGG 372 Query: 272 ----IKPKSGAFSWLN-ELIWREFYRHLMAFY 298 P +G +WL EL+WR+F+R + Y Sbjct: 373 GGGSGSPDTG-MNWLMFELLWRDFFRFITKKY 403 >gi|330814279|ref|YP_004358518.1| deoxyribodipyrimidine photolyase [Candidatus Pelagibacter sp. IMCC9063] gi|327487374|gb|AEA81779.1| deoxyribodipyrimidine photolyase [Candidatus Pelagibacter sp. IMCC9063] Length = 382 Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 48/199 (24%), Positives = 83/199 (41%), Gaps = 36/199 (18%) Query: 215 ALHILRKFCKEKVYYYVEQRDIP----AIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDL 270 AL L F + Y +R+ TS LS Y+S ++ ++ ++ + L Sbjct: 7 ALSRLENFSNNNLGKYAAERNFDPGPVNRNNTSLLSQYISHRIIDEQET---IRSAYSKL 63 Query: 271 LIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWK--- 327 P ++ E+ WR +++ + P V W+ +H L+ Sbjct: 64 ---PFKKIEKFVQEVFWRTYWKGWLEMRPQV--------------WDDYNHDLKNLHNEL 106 Query: 328 ---------QGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMS 378 +G T ++ + +L G++HN RM AS + L + W++G +F+ Sbjct: 107 TSSNYKEAIEGNTKISCLNDWVLELKEFGYLHNHARMWFASIWIFTLGLPWQLGANFFLK 166 Query: 379 QLLDGDLASNNGGWQWAAS 397 LLDGD ASN GW+W A Sbjct: 167 HLLDGDPASNTLGWRWVAG 185 >gi|15559014|gb|AAL02095.1|AF348464_1 cryptochrome 2 [Musa acuminata] Length = 61 Score = 59.3 bits (142), Expect = 1e-06, Method: Composition-based stats. Identities = 25/59 (42%), Positives = 39/59 (66%) Query: 380 LLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQ 438 LLD DL S+ GWQ+ + + D R+ NP + G+++DP G +IR+W+PEL +PT+ Sbjct: 3 LLDADLESDILGWQYVSGSLPDGHELKRLDNPEVLGQKYDPDGEYIRNWIPELARLPTE 61 >gi|195651415|gb|ACG45175.1| photolyase/blue-light receptor PHR2 [Zea mays] Length = 446 Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 79/339 (23%), Positives = 142/339 (41%), Gaps = 67/339 (19%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHG-----ISARQSHFIYASL 65 LVW R DLR+ D++ +AA S + ++ VF+ P + + +++F+ S+ Sbjct: 110 LVWFRADLRLHDHEPFHAAAGAS-SSLLPVFVFDPRDFGKSPSGFDRTGPYRANFLLDSV 168 Query: 66 LQVQKSLSQKG--IVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKL- 122 +++SL +G +V + + + + Y EV RD++ Sbjct: 169 ADLRRSLRARGGDLVVRV-----------GMPEVVIPELARAAGAEAVYAHGEVSRDEVR 217 Query: 123 LEKRLQHRVICKSFDDSVLLPPGSILNHALQ-------MYKVYTPFRKAL----IQNLVQ 171 E+R+Q V + + GS L H M Y FR+A+ ++ +++ Sbjct: 218 AEERVQKAVEKEGINVKYFW--GSTLYHVEDLPFRLEDMPSNYGGFREAVKGLEVRKVLE 275 Query: 172 A--DLRSLPVPAIRLTGPVTPSNIPRFFDYPFQA-----------IDPMFPIGEQNALHI 218 A +++ +P+ + + P +IP + A + GE AL Sbjct: 276 APEEVKCVPMKNV-----LEPGDIPTLAELGLTAPPAMSQDSKPAVGSTLIGGETEALER 330 Query: 219 LRKFCKE------KVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKE---EFVD 269 L+KF E KV Q I + ++SP+L+ G LSPR + LK+ + + Sbjct: 331 LKKFAAECSMQPNKVDKSNTQDSIYGANFSCKISPWLATGCLSPRFMYEELKKHATKAIP 390 Query: 270 LLIKPKS------GAFSWLN-ELIWREFYRHLMAFYPSV 301 PK+ +WL EL+WR+F+R + Y SV Sbjct: 391 FGSTPKNNDGTSDAGTNWLMFELLWRDFFRFITKKYSSV 429 >gi|126696885|ref|YP_001091771.1| DNA photolyase-like protein [Prochlorococcus marinus str. MIT 9301] gi|126543928|gb|ABO18170.1| DNA photolyase-like protein [Prochlorococcus marinus str. MIT 9301] Length = 382 Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 48/190 (25%), Positives = 88/190 (46%), Gaps = 21/190 (11%) Query: 215 ALHILRKFCKEKVYYYVEQRDI---PAIQGT-SQLSPYLSIGVLSPRQCWNRLKEEFVDL 270 A + F K K+ Y + R+ P + + S+LSP+++ +LS + + +K ++ Sbjct: 7 AQNTWENFAKYKINDYAKLRNFDFGPNNESSVSKLSPFITHRILSEYELIHDIKSKY--- 63 Query: 271 LIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNK---DSHLLQAWK 327 K K+ ++ E+ WR +++ M P V W I N D L ++ Sbjct: 64 --KIKNST-KFVEEIFWRVYWKGWMENRPKV--------WRNFISENNLDFDYELYESAI 112 Query: 328 QGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLAS 387 G T ++ + +L ++HN RM AS + +L + W++G ++F L DGD +S Sbjct: 113 NGNTELDYFNSWVHELKQYNYLHNHTRMWFASTWIFNLGLPWQLGAKFFFKYLFDGDASS 172 Query: 388 NNGGWQWAAS 397 N W+W Sbjct: 173 NLLSWRWVGG 182 >gi|299135755|ref|ZP_07028939.1| DNA photolyase FAD-binding [Acidobacterium sp. MP5ACTX8] gi|298601879|gb|EFI58033.1| DNA photolyase FAD-binding [Acidobacterium sp. MP5ACTX8] Length = 487 Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 65/232 (28%), Positives = 94/232 (40%), Gaps = 26/232 (11%) Query: 211 GEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDL 270 G A+ L FC + + Y R+ P + G+S+LSPYL G L P L + V Sbjct: 250 GHHAAMKRLHLFCGQMLETYDRDRNHPELDGSSKLSPYLHFGHLGPLTIALALNAQ-VKR 308 Query: 271 LIKPKSGAFSWLNELI-WREFYRHLMAFYPSVCMGKPFIPWTEKI--EWNKDS----HLL 323 K + S+ NELI WRE + + + P W E ++D + L Sbjct: 309 QPKLAAARDSYFNELIVWRELAVNFVRYQPEYDSPGCADNWARATIAEHDRDEREVLYTL 368 Query: 324 QAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK-----DLLVDWRI--GEEYF 376 + T + +AA Q+ GWMHN LRM A +V+ + W I + YF Sbjct: 369 AQLEGARTHDELWNAAQLQMVRYGWMHNYLRMYWAKKIVEWTRNTATAMKWAIYLNDRYF 428 Query: 377 MSQLLDGDLASNNGGWQWAASTGNDSV----PYF---RIFNPTIQGKRFDPQ 421 LDG + G WA D P F R + G++FD + Sbjct: 429 ----LDGRDPNGYAGVAWAVLGKFDRAWGERPVFGKRRYMSGASTGRKFDAE 476 >gi|304319762|ref|YP_003853405.1| DNA photolyase-like protein [Parvularcula bermudensis HTCC2503] gi|303298665|gb|ADM08264.1| DNA photolyase-like protein [Parvularcula bermudensis HTCC2503] Length = 424 Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 29/74 (39%), Positives = 40/74 (54%) Query: 324 QAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDG 383 QA +G TG DA ++L G++HN RM AS + L + W +G ++F LLDG Sbjct: 138 QAAVEGRTGIDGFDAWTKELIATGYLHNHARMWFASIWIFTLRLPWSLGADFFHRHLLDG 197 Query: 384 DLASNNGGWQWAAS 397 D ASN W+W Sbjct: 198 DAASNTLSWRWVGG 211 >gi|225437398|ref|XP_002270248.1| PREDICTED: hypothetical protein [Vitis vinifera] Length = 454 Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 79/334 (23%), Positives = 136/334 (40%), Gaps = 60/334 (17%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISAR--------QSHFIY 62 +VW RNDLR+ DN+ L +A N ++ V+ P R +G S+ ++ F+ Sbjct: 121 IVWFRNDLRVHDNECLNSA-SNESMSMLPVYCFDP---RDYGKSSSGFDKTGPYRASFLI 176 Query: 63 ASLLQVQKSLSQKG--IVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120 S+ ++++L ++G +V + + L ++ +R+ +EV+ + Sbjct: 177 ESVSDLRQNLQKRGSDLVVRIGKPETV------LVELAKAVGADAIYAHREVSHDEVKGE 230 Query: 121 KLLEKRLQHR-VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKAL--------IQNLVQ 171 + +E ++ V K F S L + QM Y F++ + I L Q Sbjct: 231 EKIEAAMKEEGVELKYFWGSTLYHVDDLPFKMEQMPTNYGGFKEKVKGLEIRKTIATLDQ 290 Query: 172 ADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQ--AIDPMFPI---------GEQNALHILR 220 LR LP G V IP D A P + GE AL L+ Sbjct: 291 --LRGLPA-----RGDVEAGEIPSLLDLGLSPSATLPQNGMSTANGSLVGGETEALQRLK 343 Query: 221 KF---CKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKS- 276 KF C+ + I + ++SP+L++G LSPR ++ +K+ + S Sbjct: 344 KFAAECQAQPPKGAANDSIYGANFSCKISPWLAMGCLSPRSMFDEIKKSASRTISASTSK 403 Query: 277 --------GAFSWLN-ELIWREFYRHLMAFYPSV 301 +WL EL+WR+F+R + Y S Sbjct: 404 DGGSGQSDTGMNWLMFELMWRDFFRFITKKYSSA 437 >gi|254451912|ref|ZP_05065349.1| conserved hypothetical protein [Octadecabacter antarcticus 238] gi|198266318|gb|EDY90588.1| conserved hypothetical protein [Octadecabacter antarcticus 238] Length = 276 Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 33/87 (37%), Positives = 46/87 (52%), Gaps = 2/87 (2%) Query: 337 DAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAA 396 D ++L G++HN RM AS + L + WR+G ++F LLDGD A+N W+WAA Sbjct: 5 DTWAQELVDTGYLHNHARMWFASIWIFTLGLPWRLGADFFYRHLLDGDAAANTLNWRWAA 64 Query: 397 STGNDSVPY-FRIFN-PTIQGKRFDPQ 421 PY R N G RF+P+ Sbjct: 65 GLHTRGKPYPARAQNIAAFTGGRFNPR 91 >gi|212275814|ref|NP_001131008.1| hypothetical protein LOC100192113 [Zea mays] gi|194690696|gb|ACF79432.1| unknown [Zea mays] gi|194701496|gb|ACF84832.1| unknown [Zea mays] Length = 446 Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 79/339 (23%), Positives = 142/339 (41%), Gaps = 67/339 (19%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHG-----ISARQSHFIYASL 65 LVW R DLR+ D++ +AA S + ++ VF+ P + + +++F+ S+ Sbjct: 110 LVWFRADLRLHDHEPFHAAAGAS-SSLLPVFVFDPRDFGKSPSGFDRTGPYRANFLLDSV 168 Query: 66 LQVQKSLSQKG--IVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKL- 122 +++SL +G +V + + + + Y EV RD++ Sbjct: 169 ADLRRSLRARGGDLVVRVGR-----------PEVVIPELARAAGAEAVYAHGEVSRDEVR 217 Query: 123 LEKRLQHRVICKSFDDSVLLPPGSILNHALQ-------MYKVYTPFRKAL----IQNLVQ 171 E+R+Q V + + GS L H M Y FR+A+ ++ +++ Sbjct: 218 AEERVQKAVEKEGINVKYFW--GSTLYHVEDLPFRLEDMPSNYGGFREAVKGLEVRKVLE 275 Query: 172 A--DLRSLPVPAIRLTGPVTPSNIPRFFDYPFQA-----------IDPMFPIGEQNALHI 218 A +++ +P+ + + P +IP + A + GE AL Sbjct: 276 APEEVKCVPMKNV-----LEPGDIPTLAELGLTAPPAMSQDSKPAVGSTLIGGETEALER 330 Query: 219 LRKFCKE------KVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKE---EFVD 269 L+KF E KV Q I + ++SP+L+ G LSPR + LK+ + + Sbjct: 331 LKKFAAECSMQPNKVDKSNTQDSIYGANFSCKISPWLATGCLSPRFMYEELKKHATKAIP 390 Query: 270 LLIKPKS------GAFSWLN-ELIWREFYRHLMAFYPSV 301 PK+ +WL EL+WR+F+R + Y SV Sbjct: 391 FGSTPKNNDGTSDAGTNWLMFELLWRDFFRFITKKYSSV 429 >gi|242040969|ref|XP_002467879.1| hypothetical protein SORBIDRAFT_01g035750 [Sorghum bicolor] gi|241921733|gb|EER94877.1| hypothetical protein SORBIDRAFT_01g035750 [Sorghum bicolor] Length = 447 Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 77/332 (23%), Positives = 144/332 (43%), Gaps = 53/332 (15%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHG-----ISARQSHFIYASL 65 LVW R DLR+ D++ +AA S + ++ VF+ P + + +++F+ S+ Sbjct: 111 LVWFRADLRLHDHEPFHAAAGASSS-LLPVFVFDPRDFGKSPSGFDRTGPYRANFLLDSV 169 Query: 66 LQVQKSLSQKG--IVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLL 123 +++SL +G +V + + + ++ + + +EVR ++ + Sbjct: 170 ADLRRSLRARGGDLVVRVGRPEVV------IPELARAAGAEAVYAHGEVSRDEVRAEERV 223 Query: 124 EKRLQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKAL----IQNLVQA--DLRS 176 +K ++ I K F S L + H M Y FR+A+ ++ +++A +++ Sbjct: 224 QKAVEKEGINVKYFWGSTLYHVEDLPFHLEDMPSNYGGFREAVKGLEVRKVLEAPEEVKC 283 Query: 177 LPVPAIRLTGPVTPSNIPRFFDY-----PFQAIDPMFPIG------EQNALHILRKFCKE 225 +P+ + + P +IP + P A D +G E AL L+KF E Sbjct: 284 VPMKNV-----LEPGDIPTLAELGLTAPPAMAQDSKPAVGSTLIGGETEALERLKKFAVE 338 Query: 226 ------KVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKE---EFVDLLIKPKS 276 K Q I + ++SP+L+ G LSPR + LK+ + PK+ Sbjct: 339 CSMQPNKADKSNTQDSIYGANFSCKISPWLATGCLSPRFMYEELKKHATRAIPFGSTPKN 398 Query: 277 ------GAFSWLN-ELIWREFYRHLMAFYPSV 301 +WL EL+WR+F+R + Y SV Sbjct: 399 NDGTSDAGTNWLMFELLWRDFFRFITKKYSSV 430 >gi|325285641|ref|YP_004261431.1| DNA photolyase FAD-binding protein [Cellulophaga lytica DSM 7489] gi|324321095|gb|ADY28560.1| DNA photolyase FAD-binding protein [Cellulophaga lytica DSM 7489] Length = 372 Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 49/176 (27%), Positives = 75/176 (42%), Gaps = 31/176 (17%) Query: 241 GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPS 300 + LSPY+S GV+S + + +E + KP ++ EL WR++++ + Sbjct: 40 AVTHLSPYISRGVISTK----YILKEVLSQGHKPLEIE-KFIQELAWRDYWQQV------ 88 Query: 301 VCMGKPFIPWTEK-IEWNKDSHLLQ----------AWKQGYTGFPIIDAAMRQLNTIGWM 349 W K E N D Q + + TG +D A+R+L G+M Sbjct: 89 ---------WIAKGDEINTDLKHTQTPVSNIQIPKSIVEANTGIIAVDNAIRKLEQTGYM 139 Query: 350 HNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPY 405 HN LRM AS W + ++ LLD D ASN WQW A + ++ Y Sbjct: 140 HNHLRMYAASLACNIGQSHWLLPAKWMYYYLLDADWASNALSWQWVAGSNSNKKYY 195 >gi|297824863|ref|XP_002880314.1| photolyase/blue-light receptor 2 [Arabidopsis lyrata subsp. lyrata] gi|297326153|gb|EFH56573.1| photolyase/blue-light receptor 2 [Arabidopsis lyrata subsp. lyrata] Length = 448 Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 77/326 (23%), Positives = 141/326 (43%), Gaps = 52/326 (15%) Query: 13 WLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISAR--------QSHFIYAS 64 W RNDLR+ DN+ L +A ++ V+ V+ P R +G S+ ++ F+ S Sbjct: 121 WFRNDLRVHDNECLNSA-NDECVSVLPVYCFDP---RDYGKSSSGFDKTGPFRAQFLIES 176 Query: 65 LLQVQKSLSQKG--IVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKL 122 + +++K+L +G +V + + L + ++ +R+ +EV+ + Sbjct: 177 VSELRKNLQARGSNLVVRVGKPEAV------LVELAKEIGADAVYAHREVSHDEVKAEGK 230 Query: 123 LEKRLQHR-VICKSFDDSVLLPPGSILNHALQMYKVYTPFR----KALIQNLVQA--DLR 175 +E ++ V K F S L + + Y F+ K I+ + A L+ Sbjct: 231 IESAMKEEGVEVKYFWGSTLYHLDDLPFKIEDLPSNYGAFKDKVHKLEIRKTIAALDQLK 290 Query: 176 SLPVPAIRLTGPVTPSNIPRFFDYPF-------QAIDPMFPIGEQNALHILRKF---CKE 225 SLP G V +IP D Q P GE AL L+ F C+ Sbjct: 291 SLPS-----RGDVELGDIPSLLDLGISPTARTSQEGKPTMVGGETEALTRLKSFAADCQA 345 Query: 226 KVYYYVEQRDIPAIQG---TSQLSPYLSIGVLSPRQCWNRLKEEF--VDLLIKPKSG--- 277 ++ ++ ++ G + ++SP+L++G +SPR ++ LK+ P++G Sbjct: 346 RLSKGNQKGGNNSVFGANFSCKISPWLAMGSISPRSMFDELKKTISASTTTTTPRNGPGD 405 Query: 278 -AFSWLN-ELIWREFYRHLMAFYPSV 301 +WL EL+WR+F+R + Y S Sbjct: 406 TGLNWLMYELLWRDFFRFITKKYSSA 431 >gi|323451015|gb|EGB06894.1| hypothetical protein AURANDRAFT_28788 [Aureococcus anophagefferens] Length = 183 Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 39/114 (34%), Positives = 55/114 (48%), Gaps = 10/114 (8%) Query: 355 MITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQ 414 M+ ASFLV+ L V W G +F L+D D A N WQ A +G D + + +P + Sbjct: 1 MVVASFLVEYLRVSWVQGAAWFEETLVDMDPAINAMMWQNAGRSGIDQWNF--VMSP--E 56 Query: 415 GKRFDPQGTFIRHWLPELNNVPTQYIHAP------HSWLDKNDLSLNYPLPIVD 462 DP G F ++PEL +PT+++H P L YPL +VD Sbjct: 57 NASQDPTGKFTLRYVPELAGLPTKHLHRPWTAPAAALAKAGVALGETYPLRVVD 110 >gi|313620255|gb|EFR91705.1| deoxyribodipyrimidine photo-lyase [Listeria innocua FSL S4-378] Length = 158 Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 47/157 (29%), Positives = 76/157 (48%), Gaps = 16/157 (10%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 ++W R DLR+ DNKALY A D +I +F PEQ+ + G + Q+ F AS+ Q+ Sbjct: 4 VMWFRRDLRVNDNKALYHAXXEED--LILLFQVNPEQFIK-GSPSHQAFF--ASVAHFQQ 58 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRV---TKLFYNRQYEINEVRRDKLLEKRL 127 L++ H F + IE L L++++ K+F+NR RD+ Sbjct: 59 ELNKNT-----HLQIMFGEPIELLKQ--LKEKIPTWDKVFFNRDETGYGASRDEAARAFF 111 Query: 128 QHR-VICKSFDDSVLLPPGSILNHALQMYKVYTPFRK 163 + + S+ DS L + A + YK++TP+ K Sbjct: 112 ADKEITVHSYHDSYLHSAEEVKKSATEYYKIFTPYYK 148 >gi|123969094|ref|YP_001009952.1| DNA photolyase-like protein [Prochlorococcus marinus str. AS9601] gi|123199204|gb|ABM70845.1| DNA photolyase-like protein [Prochlorococcus marinus str. AS9601] Length = 384 Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 48/190 (25%), Positives = 86/190 (45%), Gaps = 21/190 (11%) Query: 215 ALHILRKFCKEKVYYYVEQRDI---PAIQGT-SQLSPYLSIGVLSPRQCWNRLKEEFVDL 270 A + F K K+ Y + R+ P + + S+LSP+++ +LS + +K ++ Sbjct: 7 AQNTWENFAKYKINDYAKLRNFDFGPNNESSVSKLSPFITHRILSEYDLIHDIKSKY--- 63 Query: 271 LIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNK---DSHLLQAWK 327 K K+ ++ E+ WR +++ M P V W I N D L + Sbjct: 64 --KIKNST-KFVEEIFWRVYWKGWMENRPKV--------WRNFISENNLDFDYELYENAI 112 Query: 328 QGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLAS 387 G T ++ + +L ++HN RM AS + +L + W++G ++F L DGD +S Sbjct: 113 NGNTELDFFNSWVHELKQYNYLHNHTRMWFASTWIFNLGLPWQLGAKFFFKYLFDGDASS 172 Query: 388 NNGGWQWAAS 397 N W+W Sbjct: 173 NLLSWRWVGG 182 >gi|118484811|gb|ABK94273.1| unknown [Populus trichocarpa] Length = 457 Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 78/328 (23%), Positives = 137/328 (41%), Gaps = 57/328 (17%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISAR--------QSHFIY 62 +VW RNDLR+ DN+ L +A +N V+ V+ P R +G S+ +++F+ Sbjct: 127 IVWFRNDLRVHDNECLNSA-NNDSMSVLPVYCFDP---RDYGKSSSGFDKTGPYRANFLI 182 Query: 63 ASLLQVQKSLSQKG--IVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120 S+ ++K+L +G +V + + L ++ +R+ +EV+ + Sbjct: 183 ESVSDLRKNLQARGSDLVVRVGRPETV------LVELAKAIGADAVYAHREVSHDEVKAE 236 Query: 121 KLLEKRLQHR-VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKAL--------IQNLVQ 171 + +E+ ++ V K F S L + M Y F++ + I+ L Q Sbjct: 237 EKIEELMKDEGVEVKYFWGSTLYHLDDLPFKLEDMPSNYGGFKEKVQGLEIRKTIETLDQ 296 Query: 172 ADLRSLPVPAIRLTGPVTPSNIPRFFDY---PFQ----AIDPMFPIGEQNALHILRKF-- 222 L+ LP G V P +IP D P Q A + GE AL L KF Sbjct: 297 --LKGLPS-----RGDVEPGDIPNLLDLGLNPAQDGKAAANASMVGGETEALQRLNKFAA 349 Query: 223 -CKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLL---------- 271 C+ + I + ++SP+L++G +S R ++ LK+ + Sbjct: 350 ECQAQPPKGGSHESIYGANFSCKISPWLTMGCVSARSMFDELKKTATRTVSAASNHNSGG 409 Query: 272 IKPKSGAFSWLN-ELIWREFYRHLMAFY 298 +WL EL+WR+F+R + Y Sbjct: 410 SSSPGAGMNWLMFELMWRDFFRFITKKY 437 >gi|238606859|ref|XP_002396828.1| hypothetical protein MPER_02855 [Moniliophthora perniciosa FA553] gi|215470103|gb|EEB97758.1| hypothetical protein MPER_02855 [Moniliophthora perniciosa FA553] Length = 134 Score = 57.4 bits (137), Expect = 5e-06, Method: Composition-based stats. Identities = 31/86 (36%), Positives = 48/86 (55%), Gaps = 5/86 (5%) Query: 371 IGEEYFMSQLLDGDLASNNGGWQWAASTGND---SVPYFRIFNPTIQGKRFDPQGTFIRH 427 +G E++ S L+D D+ASN G W + A GND S R FNP Q +D +G ++R Sbjct: 1 LGAEWYESLLIDYDVASNYGNWAYVAGVGNDPRASEGEPRKFNPVKQAFDYDAKGEYVRT 60 Query: 428 WLPELN--NVPTQYIHAPHSWLDKND 451 W+ E N N+ +++ L+K+D Sbjct: 61 WIGEFNGFNMKEEWLFQAWKALEKDD 86 >gi|188996663|ref|YP_001930914.1| Deoxyribodipyrimidine photo-lyase [Sulfurihydrogenibium sp. YO3AOP1] gi|188931730|gb|ACD66360.1| Deoxyribodipyrimidine photo-lyase [Sulfurihydrogenibium sp. YO3AOP1] Length = 455 Score = 57.0 bits (136), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 47/155 (30%), Positives = 73/155 (47%), Gaps = 12/155 (7%) Query: 208 FPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEF 267 F G A L++F ++K++ Y E R P + S LSPYL G +SP + + E+ Sbjct: 222 FIGGYSQAKRCLKEFIEKKLHKYKEYRSHPELDYQSNLSPYLHFGQISPIEVALEILSEY 281 Query: 268 VDLLIKPKSGAFSWLNELI-WREFYRHLMAFYPSVCMGKPFIPWTEK-IEWNKDS----- 320 K S+ NELI WRE R+ + PS + W +K +E +K+ Sbjct: 282 -----KKDENVDSFFNELIAWRELARNFCYYNPSYNHYEGIPDWAKKTLEDHKNDKRDYV 336 Query: 321 HLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRM 355 + L+ ++ T +AA +L G MHN +RM Sbjct: 337 YTLEEFENAKTHDEYWNAAQLELLKSGKMHNFMRM 371 >gi|33861916|ref|NP_893477.1| DNA photolyase [Prochlorococcus marinus subsp. pastoris str. CCMP1986] gi|33640284|emb|CAE19819.1| similar to DNA photolyase [Prochlorococcus marinus subsp. pastoris str. CCMP1986] Length = 379 Score = 57.0 bits (136), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 51/203 (25%), Positives = 90/203 (44%), Gaps = 22/203 (10%) Query: 241 GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPS 300 S+LSPY+S VL + +K+++ I ++ E+ WR +++ M P Sbjct: 37 SVSKLSPYISHRVLLEYELLEEVKKKYRSQKINK------FVEEIYWRIYWQGWMENRPK 90 Query: 301 VCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTG---FPIIDAAMRQLNTIGWMHNRLRMIT 357 V W I N + ++ +++ G ++ + +L T ++HN RM Sbjct: 91 V--------WCNFISENNYEYDIETYEKAINGNSELGFFNSWVNELKTYNYLHNHTRMWF 142 Query: 358 ASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQ--- 414 AS + +L + W++G +F L DGD ASN W+W A Y R + ++ Sbjct: 143 ASTWIFNLGLPWQLGASFFFKHLYDGDAASNLLSWRWVAGLQTKGKQY-RFSSANLRKFS 201 Query: 415 GKRFDPQGTFIRH-WLPELNNVP 436 RF+ + R +L E N +P Sbjct: 202 NNRFNVEKISNRQIFLEEKNQIP 224 >gi|330814061|ref|YP_004358300.1| deoxyribodipyrimidine photolyase [Candidatus Pelagibacter sp. IMCC9063] gi|327487156|gb|AEA81561.1| deoxyribodipyrimidine photolyase [Candidatus Pelagibacter sp. IMCC9063] Length = 271 Score = 57.0 bits (136), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 54/222 (24%), Positives = 102/222 (45%), Gaps = 15/222 (6%) Query: 12 VWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQKS 71 +W+R D RI DN ALY C N K+ A FI ++++ + Q +++ +L+ Q Sbjct: 7 LWVREDFRIDDNPALYNIC-NIQEKIEAFFIYDEKKFKNR---SAQRWWLHKTLVNFQNK 62 Query: 72 LSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ-HR 130 L+ GI F+ + D+ I ++ +++ +YN +E + +EK L + Sbjct: 63 LNNIGISFKVYA----DNEIVYIKKLIKNEKIDNFYYNAIARPDERLIENEIEKNLAIYD 118 Query: 131 VICKSFDDSVLLPPGSILNHALQMYKVYTPF-RKALIQNLVQADLRSLPVPAIRLTGPVT 189 V + F+ ++L P S+ ++V+TP+ R A Q L + S + + T Sbjct: 119 VNYEKFESNLLQDPFSVRKKDNTPFQVFTPYWRNAEEQYLKNKNFISKKITYKKSTIKED 178 Query: 190 PSNIPRFFDYP----FQAIDPMFPIGEQNALHILRKFCKEKV 227 + + P F+ + + GE A +L+ F K+K+ Sbjct: 179 NTAVLNLI-LPKKEWFEKFEKFWTPGEDMAKTLLKDFIKKKL 219 >gi|15226633|ref|NP_182281.1| PHR2 (photolyase/blue-light receptor 2); DNA photolyase [Arabidopsis thaliana] gi|116248577|sp|Q8LB72|PHR2_ARATH RecName: Full=Blue-light photoreceptor PHR2 gi|2529668|gb|AAC62851.1| photolyase/blue-light receptor (PHR2) [Arabidopsis thaliana] gi|3319288|gb|AAC26199.1| photolyase/blue light photoreceptor PHR2 [Arabidopsis thaliana] gi|115646759|gb|ABJ17108.1| At2g47590 [Arabidopsis thaliana] gi|330255768|gb|AEC10862.1| photolyase/blue-light receptor 2 [Arabidopsis thaliana] Length = 447 Score = 57.0 bits (136), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 77/326 (23%), Positives = 141/326 (43%), Gaps = 52/326 (15%) Query: 13 WLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISAR--------QSHFIYAS 64 W RNDLR+ DN+ L +A ++ V+ V+ P R +G S+ ++ F+ S Sbjct: 120 WFRNDLRVHDNECLNSA-NDECVSVLPVYCFDP---RDYGKSSSGFDKTGPFRAQFLIES 175 Query: 65 LLQVQKSLSQKG--IVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKL 122 + +++K+L +G +V + + L + ++ +R+ +EV+ + Sbjct: 176 VSELRKNLQARGSNLVVRVGKPEAV------LVELAKEIGADAVYAHREVSHDEVKAEGK 229 Query: 123 LEKRLQHR-VICKSFDDSVLLPPGSILNHALQMYKVYTPFR----KALIQNLVQA--DLR 175 +E ++ V K F S L + + Y F+ K I+ + A L+ Sbjct: 230 IETAMKEEGVEVKYFWGSTLYHLDDLPFKIEDLPSNYGAFKDKVQKLEIRKTIAALDQLK 289 Query: 176 SLPVPAIRLTGPVTPSNIPRFFDYPF-------QAIDPMFPIGEQNALHILRKF---CKE 225 SLP G V +IP D Q P GE AL L+ F C+ Sbjct: 290 SLPS-----RGDVELGDIPSLLDLGISPTPRTSQEGKPTMVGGETEALTRLKSFAADCQA 344 Query: 226 KVYYYVEQRDIPAIQG---TSQLSPYLSIGVLSPRQCWNRLKE--EFVDLLIKPKSG--- 277 ++ ++ ++ G + ++SP+L++G +SPR ++ LK+ P++G Sbjct: 345 RLSKGNQKGGNNSVFGANFSCKISPWLAMGSISPRSMFDELKKTISASTTSTTPRNGPGD 404 Query: 278 -AFSWLN-ELIWREFYRHLMAFYPSV 301 +WL EL+WR+F+R + Y S Sbjct: 405 TGLNWLMYELLWRDFFRFITKKYSSA 430 >gi|326493834|dbj|BAJ85379.1| predicted protein [Hordeum vulgare subsp. vulgare] Length = 448 Score = 56.6 bits (135), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 78/338 (23%), Positives = 135/338 (39%), Gaps = 45/338 (13%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHG-----ISARQSHFIYASL 65 LVW R DLR+ D++ L+AA S + ++ VF+ P + + ++ F+ S+ Sbjct: 110 LVWFRADLRLHDHEPLHAAVGAS-SSLLPVFVFDPRDFGKSPSGFDRTGPYRASFLLDSV 168 Query: 66 LQVQKSLSQKG--IVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLL 123 +++SL +G +V + + + ++ + + +E R ++ + Sbjct: 169 ADLRRSLRARGGDLVVRVGRPEVV------IPELARAAGAEAVYAHGEVSRDECRTEEKV 222 Query: 124 EKRLQHR-VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLP--VP 180 K ++ V K F S L + M Y FR+A ++ L + P V Sbjct: 223 SKAIEKEGVEVKYFWGSTLYHLDDLPFRLNDMPSSYGGFREA-VKGLEVRKVLDAPEEVK 281 Query: 181 AIRLTGPVTPSNIPRFFDYPFQAIDPM-----------FPIGEQNALHILRKFCKE---- 225 + + + P +IP + A M GE AL L+KF E Sbjct: 282 CVPMKNVLEPGDIPTLGELGLSAPPAMAQDSKSAAGSNLIGGEAEALERLKKFAAECCMQ 341 Query: 226 --KVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLL---IKPKSG--- 277 K Q I + ++SP+L+ G LSPR + LK+ + + PK G Sbjct: 342 PNKAVKDSTQNSIYGANFSCKISPWLATGCLSPRFMYEELKKHAIRAIPSGSTPKDGDGT 401 Query: 278 ---AFSWLN-ELIWREFYRHLMAFYPSVCMGKPFIPWT 311 +WL EL+WR+F+R + Y S P T Sbjct: 402 SDAGTNWLMFELLWRDFFRFVTKKYSSAQKTSEVAPAT 439 >gi|237756180|ref|ZP_04584748.1| deoxyribodipyrimidine photo-lyase [Sulfurihydrogenibium yellowstonense SS-5] gi|237691667|gb|EEP60707.1| deoxyribodipyrimidine photo-lyase [Sulfurihydrogenibium yellowstonense SS-5] Length = 455 Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 46/155 (29%), Positives = 73/155 (47%), Gaps = 12/155 (7%) Query: 208 FPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEF 267 F G A L++F ++K++ Y E R P + S LSPYL G +SP + + E+ Sbjct: 222 FIGGYNQAKRCLKEFIEKKLHKYKEYRSHPELDYQSNLSPYLHFGQISPIEVVLEILSEY 281 Query: 268 VDLLIKPKSGAFSWLNELI-WREFYRHLMAFYPSVCMGKPFIPWTEK-IEWNKDS----- 320 K S+ NELI WRE R+ + P+ + W +K +E +K+ Sbjct: 282 -----KKDENVDSFFNELIVWRELARNFCYYNPNYNHYEGIPDWAKKTLEDHKNDKRDYV 336 Query: 321 HLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRM 355 + L+ ++ T +AA +L G MHN +RM Sbjct: 337 YTLEEFENAKTHDEYWNAAQLELLKSGKMHNYMRM 371 >gi|21592984|gb|AAM64933.1| photolyase/blue-light receptor PHR2 [Arabidopsis thaliana] Length = 447 Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 77/326 (23%), Positives = 140/326 (42%), Gaps = 52/326 (15%) Query: 13 WLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISAR--------QSHFIYAS 64 W RNDLR+ DN+ L +A ++ V+ V+ P R +G S+ ++ F+ S Sbjct: 120 WFRNDLRVHDNECLNSA-NDECVSVLPVYCFDP---RDYGKSSSGFDKTGPFRAQFLIES 175 Query: 65 LLQVQKSLSQKG--IVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKL 122 + +++K+L +G +V + + L + ++ +R+ +EV+ + Sbjct: 176 VSELRKNLQARGSNLVVRVGKPEAV------LVELAKEIGADAVYAHREVSHDEVKAEGK 229 Query: 123 LEKRLQHR-VICKSFDDSVLLPPGSILNHALQMYKVYTPFR----KALIQNLVQA--DLR 175 +E ++ V K F S L + + Y F+ K I+ + A L+ Sbjct: 230 IETAMKEEGVEVKYFWGSTLYHLDDLPFKIEDLPSNYGAFKDKVQKLEIRKTIAALDQLK 289 Query: 176 SLPVPAIRLTGPVTPSNIPRFFDYPF-------QAIDPMFPIGEQNALHILRKF---CKE 225 SLP G V +IP D Q P GE AL L+ F C+ Sbjct: 290 SLPS-----RGDVELGDIPSLLDLGISPTPRTSQEGKPTMVGGETEALTRLKSFAADCQX 344 Query: 226 KVYYYVEQRDIPAIQG---TSQLSPYLSIGVLSPRQCWNRLKE--EFVDLLIKPKSG--- 277 + ++ ++ G + ++SP+L++G +SPR ++ LK+ P++G Sbjct: 345 RXSKGNQKGGNNSVFGANFSCKISPWLAMGSISPRSMFDELKKTISASTTSTTPRNGPGD 404 Query: 278 -AFSWLN-ELIWREFYRHLMAFYPSV 301 +WL EL+WR+F+R + Y S Sbjct: 405 TGLNWLMYELLWRDFFRFITKKYSSA 430 >gi|83859814|ref|ZP_00953334.1| DNA photolyase-like protein [Oceanicaulis alexandrii HTCC2633] gi|83852173|gb|EAP90027.1| DNA photolyase-like protein [Oceanicaulis alexandrii HTCC2633] Length = 414 Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 34/120 (28%), Positives = 58/120 (48%), Gaps = 3/120 (2%) Query: 278 AFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWK---QGYTGFP 334 A ++ E+ WR +++ + +V ++D L Q ++ +G TG Sbjct: 81 AEKFIQEVCWRTYWKGWLELRSAVWADYKAEREQAFTAVSEDQALAQRYEAAIEGRTGLE 140 Query: 335 IIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQW 394 DA +L G++HN RM AS + L + W +G ++F+ L+DGD ASN W+W Sbjct: 141 GFDAWATELMQTGYLHNHARMWFASIWIFTLDLPWVLGADHFLRHLIDGDAASNTLSWRW 200 >gi|327342158|gb|AEA50866.1| cry2-2 [Populus tremula] Length = 226 Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 26/59 (44%), Positives = 37/59 (62%), Gaps = 12/59 (20%) Query: 413 IQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKN---------DLSLNYPLPIVD 462 IQG +FDP+G ++R WLPEL +P ++IH H W D + +L +NYP PI+D Sbjct: 1 IQGSKFDPEGEYVRRWLPELARMPAEWIH--HPW-DASIAVLKAAGVELGINYPKPIID 56 >gi|15559006|gb|AAL02091.1|AF348460_1 cryptochrome 2 [Hordeum vulgare] Length = 61 Score = 55.5 bits (132), Expect = 2e-05, Method: Composition-based stats. Identities = 23/59 (38%), Positives = 36/59 (61%) Query: 380 LLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQ 438 LLD D S+ GWQ+ + D R+ NP +QG+++DP G ++R W+PEL +P + Sbjct: 3 LLDADRESDILGWQYISGCLPDGHELGRLDNPEVQGQKYDPDGEYVRTWIPELARMPGE 61 >gi|48716245|dbj|BAD23781.1| putative cryptochrome 2 [Oryza sativa Japonica Group] Length = 298 Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 61/265 (23%), Positives = 112/265 (42%), Gaps = 17/265 (6%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 +VW R DLRI DN AL +A D V+ VFI P Q ++ SL + + Sbjct: 8 VVWFRRDLRIDDNPALASAAR--DGAVLPVFIWCPADEGQFYPGRCSRWWLKQSLPHLSQ 65 Query: 71 SLSQKGI-VFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYE-INEVRRDKLLEKRLQ 128 SL G + S + + +DS T+L YN Y+ ++ VR DK+ ++ Sbjct: 66 SLESLGCPLVLIRAESTLEALLRCIDSV----GATRLVYNHLYDPVSLVRDDKIKKELSA 121 Query: 129 HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQAD-----LRSLPVPAIR 183 + +SF+ +L P I + + + + + + ++ + A + +PVP + Sbjct: 122 LGISIQSFNGDLLYEPWEIYDDSGLAFTTFNMYWEKCMELPIDASPSLAPWKLVPVPGLE 181 Query: 184 LTGPVTPSNIPRFFDYPFQAIDPMF----PIGEQNALHILRKFCKEKVYYYVEQRDIPAI 239 + ++ ++ + + G +NA +L +F + Y + Sbjct: 182 SVRSCSVDDLGLESSKDEESSNALLMRAWSPGWRNAEKMLEEFVSHGLLEYSKHGMKVEG 241 Query: 240 QGTSQLSPYLSIGVLSPRQCWNRLK 264 TS LSPYL G +S R+ + ++ Sbjct: 242 ATTSLLSPYLHFGEVSVRKVYQLVR 266 >gi|296121685|ref|YP_003629463.1| DNA photolyase FAD-binding protein [Planctomyces limnophilus DSM 3776] gi|296014025|gb|ADG67264.1| DNA photolyase FAD-binding protein [Planctomyces limnophilus DSM 3776] Length = 493 Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 88/387 (22%), Positives = 155/387 (40%), Gaps = 49/387 (12%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 L W+ + R+ N L A H + + + I P R S R HF+ + + Sbjct: 28 LYWMISARRLQWNFGLQQAVHRAQTLNLPLVILEPIGCRAKWSSVRFHHFVIEGMAEHHA 87 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130 ++GI + + + +++Y Q+ + + R + L +R+ Sbjct: 88 LCQERGIAYHPYVEPEPGHGVGLVEAYA--QKAAAVITDDFPCYFLPRMVQTLGQRIDVP 145 Query: 131 VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQ-------ADLRSLPVPAIR 183 + C D + + P + Q++ FR+ L +N+ AD + P+ ++ Sbjct: 146 LEC--VDSNGIFP----MRATDQVFTTAHAFRRFLQKNIKPYLSEFPVADSLAGPILSME 199 Query: 184 LTG-------PVTPSNIPR----FFDYPF-QAIDPM-FPIGEQNALHILRKFCKEKVYYY 230 + G P TP + R P Q + P F G + A + +F K ++ Y Sbjct: 200 IPGQIARKWSPATPGLLNRDASALAQLPIDQTVQPAAFRGGLKAAQEAVARFFKSRLPRY 259 Query: 231 VEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRL--KEEFV-DLLIKPKSG---------- 277 + R+ P + S LSPYL G +S + ++RL KE + + L + SG Sbjct: 260 ADDRNNPEQEAASGLSPYLHFGHVSAHEVFSRLAAKESWKPEHLPEKASGSREGWWQMSP 319 Query: 278 -AFSWLNELI-WREFYRHLMAFYPSVCMGKPFIPWT-EKIEWNKDSHL-----LQAWKQG 329 A ++L+ELI WRE + + + W + +E + H L + Sbjct: 320 AAEAFLDELITWREVGYNFTSHREDYDQYESLPAWARQSLEKHAGDHRPSLYDLHQLEIA 379 Query: 330 YTGFPIIDAAMRQLNTIGWMHNRLRMI 356 T + +AA RQL G MHN LRM+ Sbjct: 380 QTHDELWNAAQRQLVREGRMHNYLRML 406 >gi|149195752|ref|ZP_01872809.1| deoxyribodipyrimidine photolyase-like protein [Lentisphaera araneosa HTCC2155] gi|149141214|gb|EDM29610.1| deoxyribodipyrimidine photolyase-like protein [Lentisphaera araneosa HTCC2155] Length = 359 Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 45/173 (26%), Positives = 72/173 (41%), Gaps = 35/173 (20%) Query: 241 GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPS 300 S LS Y+S G++S R ++ L + DL K ++ EL WR++++ ++ + Sbjct: 33 AVSYLSAYISRGIISTRTVYDSLIKRGYDLEKIEK-----FVQELAWRDYWQSQWNYHGA 87 Query: 301 VCMGKPFIPWTEKIEWNKDSHLLQAWKQGYT--GFP-----------IIDAAMRQLNTIG 347 K +H L+ + Y G P + + A++QL T G Sbjct: 88 -----------------KINHDLRHSQMAYNKHGMPSRLVDEKCSIQVFNTAIKQLKTTG 130 Query: 348 WMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGN 400 ++HN +RM A W + L+DGD ASN WQW A N Sbjct: 131 YLHNHMRMYLAMSTCNIGGYHWHDPARWMYYHLIDGDWASNALSWQWVAGCLN 183 >gi|320109156|ref|YP_004184746.1| DNA photolyase FAD-binding protein [Terriglobus saanensis SP1PR4] gi|319927677|gb|ADV84752.1| DNA photolyase FAD-binding protein [Terriglobus saanensis SP1PR4] Length = 479 Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 97/447 (21%), Positives = 170/447 (38%), Gaps = 64/447 (14%) Query: 13 WLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQKSL 72 W++ R DN AL A +D + V + R HF+ LL V+ L Sbjct: 37 WMQRAQRGRDNAALNLAVQIADELGLPVVTYFAGISNFPHANLRHYHFLQQGLLDVENDL 96 Query: 73 SQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRR-DKLLEKRLQHRV 131 +++GI F + D++ + + + + R ++ K ++ V Sbjct: 97 AERGIGFVLRNAPECSPVQFFADAHA------AIVIGDENPLRAMERWRSMVAKNIE--V 148 Query: 132 ICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPS 191 + D V++P +L A + P K + + V +I + P Sbjct: 149 PYWTIDTDVIVP-SKLLEKAQYAARTIRPRLKKFLPEFLHL------VKSIDNSAPAKEW 201 Query: 192 NIPRFFDYPFQAID----------PMFPIGEQNA--------LHILRKFCKEKVYYYVEQ 233 PR + +ID + P+ E N LH+ K + Y + Sbjct: 202 QQPRGLRHDKLSIDMTKQWPDLDRSVLPVDEWNGGSGAAYKRLHLFTK----NLGNYDRE 257 Query: 234 RDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELI-WREFYR 292 R+ P GTS LSP+L G + P +++ SG ++L++LI WRE Sbjct: 258 RNHPETDGTSMLSPFLHFGHIGPLTIALAVRKAIQTNPAAKVSGE-AYLDQLITWRELCI 316 Query: 293 HLMAFYPSVCMGKPFIPWTEKI--EWNKDS----HLLQAWKQGYTGFPIIDAAMRQLNTI 346 + + + P+ PW + E +D + L+ ++ T + +A+ RQ+ Sbjct: 317 NFVKYEPNYDTAACADPWAKVTIGEHARDERSPLYSLEQLERAETYDELWNASQRQMVYR 376 Query: 347 GWMHNRLRMITASFLVK-----DLLVDWRI--GEEYFMSQLLDGDLASNNGGWQWAASTG 399 GWMHN +RM A +++ D+ + + + YF LDG + G WA Sbjct: 377 GWMHNYMRMYWAKKILEWSPSVDVAFERAVHLNDRYF----LDGRDPNGYGSIAWALVGK 432 Query: 400 NDSV----PYF---RIFNPTIQGKRFD 419 D P F R + G++FD Sbjct: 433 FDRAWGERPIFGKIRYMSGASTGRKFD 459 >gi|78188846|ref|YP_379184.1| DNA photolyase, class 2 [Chlorobium chlorochromatii CaD3] gi|78171045|gb|ABB28141.1| Deoxyribodipyrimidine photo-lyase type II [Chlorobium chlorochromatii CaD3] Length = 459 Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 72/255 (28%), Positives = 112/255 (43%), Gaps = 48/255 (18%) Query: 173 DLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIG-----EQNALHILRKFCKEKV 227 +L +LP P LT P P N + + F A + P+G E A L+ F ++K+ Sbjct: 183 ELEALPQP---LTEP--PVNWQKLRSH-FHADASVAPVGWLTAGEAGAHATLQCFVQQKL 236 Query: 228 YYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIK----PKSGAFSWLN 283 Y QR+ P+++ TS+LSPYL G +S +FV L +K P+ ++L Sbjct: 237 NGYATQRNDPSLEATSRLSPYLHFGQIS---------TQFVALQVKAAHAPQEDKDAFLE 287 Query: 284 ELIWR----EFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDS------HLLQAWKQGYTGF 333 ELI R + Y H A Y + G P W ++ + + +A++Q T Sbjct: 288 ELIVRRELSDNYCHYNASYDRLS-GIP--AWAQETLARHATDPRDYIYSHEAFEQAKTHD 344 Query: 334 PIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQL-------LDGDLA 386 P+ +AA +L G +H +RM + K +L R EE F L LDG Sbjct: 345 PLWNAAQHELLQSGIIHGYMRM----YWAKKILEWSRTPEEAFEIALWLNDRYALDGREP 400 Query: 387 SNNGGWQWAASTGND 401 + G W+ +D Sbjct: 401 NGYVGVAWSIGGVHD 415 >gi|327342144|gb|AEA50859.1| cry1-1 [Populus tremula] Length = 268 Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 27/54 (50%), Positives = 35/54 (64%), Gaps = 6/54 (11%) Query: 414 QGKRFDPQGTFIRHWLPELNNVPTQYIH----APHSWLDKNDLSL--NYPLPIV 461 +G +FDP G ++R WLPEL +PT++IH AP S L + L NYPLPIV Sbjct: 2 EGYKFDPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPLPIV 55 >gi|158333885|ref|YP_001515057.1| deoxyribodipyrimidine photolyase [Acaryochloris marina MBIC11017] gi|158304126|gb|ABW25743.1| deoxyribodipyrimidine photolyase [Acaryochloris marina MBIC11017] Length = 465 Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 51/205 (24%), Positives = 80/205 (39%), Gaps = 18/205 (8%) Query: 159 TPFRKALIQ-NLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALH 217 PF +Q + + DL+SL + I P D + +F G A Sbjct: 178 VPFASTPVQHSSLHLDLKSLDLSNIEAVLAKLP------LDCSVPPVSSLFQGGTTRAKE 231 Query: 218 ILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSG 277 IL KF ++ Y + R+ P S +S YL G +SP L + + P+ Sbjct: 232 ILEKFLQKSFAIYADHRNQPQTDDVSYMSQYLHFGQISPLY----LALQIQSMGNVPRDN 287 Query: 278 AFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSH-------LLQAWKQGY 330 +++ ELI R A+Y +P K + H L+ + Sbjct: 288 VDTYIEELIVRRELAMNFAYYTPDYDAYSCLPNWAKTTLDNHRHDPRTPCYSLEQLDESR 347 Query: 331 TGFPIIDAAMRQLNTIGWMHNRLRM 355 T P +AAMR++ G+MHN +RM Sbjct: 348 TEDPYWNAAMREMKHTGYMHNYMRM 372 >gi|77964004|gb|ABB13343.1| cryptochrome 1b [Hordeum vulgare subsp. vulgare] Length = 286 Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 27/55 (49%), Positives = 36/55 (65%), Gaps = 6/55 (10%) Query: 414 QGKRFDPQGTFIRHWLPELNNVPTQYIH----APHSWLDKNDLSL--NYPLPIVD 462 +G +FDP G ++R WLPEL +PT++IH AP S L + L NYPLPIV+ Sbjct: 1 EGYKFDPHGEYVRRWLPELARLPTEWIHHPWDAPASVLQAAGVELGSNYPLPIVE 55 >gi|167563425|ref|ZP_02356341.1| deoxyribodipyrimidine photolyase [Burkholderia oklahomensis EO147] Length = 188 Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 41/173 (23%), Positives = 84/173 (48%), Gaps = 7/173 (4%) Query: 1 MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHF 60 M A +++ +VW R+DLR++D+ AL A + + A R G +AR + Sbjct: 1 MSAVLSIAPAVVWFRDDLRVSDHPALVRAAESGRPVIGAYVFDECAGGRPLGGAARW--W 58 Query: 61 IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120 ++ SL + +L+ G D + + S+ +++NR+Y + + D Sbjct: 59 LHGSLRALDAALAALGSRLVLLS----GDEADTITSFAAALGAGAVYWNRRYALAQRAVD 114 Query: 121 KLLEKRLQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQA 172 ++ L+ R I ++F+ S+L PG ++ + + Y+V+T + +A ++ V A Sbjct: 115 NTVQTALEARGIDVETFNASLLFEPGDLVTDSGRPYQVFTAYWRAAMRRGVHA 167 >gi|325971354|ref|YP_004247545.1| DNA photolyase FAD-binding protein [Spirochaeta sp. Buddy] gi|324026592|gb|ADY13351.1| DNA photolyase FAD-binding protein [Spirochaeta sp. Buddy] Length = 459 Score = 54.3 bits (129), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 94/378 (24%), Positives = 151/378 (39%), Gaps = 46/378 (12%) Query: 1 MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDA--KVIAVFIATPEQWRQHGISARQS 58 M A S + W++ R+ N+AL A ++A K + VF + G R Sbjct: 13 MPVNKAGSFVVYWMQAAQRVRQNEALAFAIEQANALGKPLVVFFGLERSFA--GAQERHY 70 Query: 59 HFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVR 118 F+ L +VQ+ L GI H D I L L ++ L +R Y R Sbjct: 71 RFMLEGLAEVQQQLRLLGIPLWVHG----DGIIPGLAK--LVPFISVLVTDRAY----TR 120 Query: 119 RDKLLEKRLQHRVICKSFD--DSVLLPPGSILNHALQMYKVYTPFRK-----------AL 165 ++ K++ V C ++ +V++P ++ + + Y T RK Sbjct: 121 VERQWRKQVASFVSCPFYEVETNVIVPLEAVSDK--EEYSAATLRRKIESMIAYFAQIVA 178 Query: 166 IQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKE 225 IQ + L P+ A G T + + P GE A L +F + Sbjct: 179 IQKPLVDGLSEEPLFACVNLGD-TAMVLKALALGKMGGVCPHLVGGEIQAHQKLSQFIES 237 Query: 226 KVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKE-EFVDLLIKPKSGAFSWLNE 284 K+ Y R+ P+ Q +S LSPYL G +S ++ ++E E D+ + +L E Sbjct: 238 KLSGYAIHRNDPSQQFSSGLSPYLHFGQISAIDIYHAVREIEVEDVPV--------FLEE 289 Query: 285 LIWR-EFYRHLMAFYPSVCMGKPFIPWTEKI----EWNKDSHL--LQAWKQGYTGFPIID 337 LI R E + + F P + W +K E ++ L +Q T P + Sbjct: 290 LIVRRELAYNFVWFNPLYDAYEGLPSWAQKSLAFHEQDRRPILYSFAELEQAQTHDPYWN 349 Query: 338 AAMRQLNTIGWMHNRLRM 355 AA ++L +G MHN LRM Sbjct: 350 AAQKELTELGTMHNYLRM 367 >gi|71083008|ref|YP_265727.1| deoxyribodipyrimidine photolyase-related protein [Candidatus Pelagibacter ubique HTCC1062] gi|71062121|gb|AAZ21124.1| deoxyribodipyrimidine photolyase-related protein [Candidatus Pelagibacter ubique HTCC1062] Length = 496 Score = 54.3 bits (129), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 52/206 (25%), Positives = 90/206 (43%), Gaps = 18/206 (8%) Query: 185 TGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYY------VEQRDIPA 238 T + P F D+P D + + +L F KEK + V Q+D Sbjct: 202 TKKLKPIIEKLFKDHPGSTNDFWLATEYNDVVKLLDFFIKEKSNLFGDYEDAVNQKD--N 259 Query: 239 IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELI-WREFYRHLMAF 297 I S LSPY+++G+++P ++ E I+ S ++ ++I WREF R + Sbjct: 260 ILFHSALSPYINLGLITPEIIIQKILEFHKKHKIRMNSLE-GYIRQIIGWREFMRGIYQG 318 Query: 298 YPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMIT 357 Y K F +N + + ++W +G TG P +D A++ GW H+ R++ Sbjct: 319 YSDEMETKNF--------FNHERKMKKSWYEGTTGLPPLDHAIKNAVNHGWSHHIERLMI 370 Query: 358 ASFLVKDLLVDWRIGEEYFMSQLLDG 383 S ++ V I ++FM +D Sbjct: 371 LSNIMNLCEVKPTIVYKWFMEMFVDS 396 >gi|300708917|ref|XP_002996629.1| hypothetical protein NCER_100256 [Nosema ceranae BRL01] gi|239605945|gb|EEQ82958.1| hypothetical protein NCER_100256 [Nosema ceranae BRL01] Length = 473 Score = 53.9 bits (128), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 60/225 (26%), Positives = 91/225 (40%), Gaps = 41/225 (18%) Query: 192 NIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSI 251 NIP++ P + + G L ++ F K + Y E R+ P + G S LSPY+ + Sbjct: 215 NIPKY--EPAKYYQGTYSAG----LKVMDDFFNNKFHIYNECRNNPDVDGLSNLSPYIHL 268 Query: 252 GVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNEL-IWREFYRHLMAFYPSVCMGKPFIPW 310 G+LSP++ E+F K K ++ E+ IWRE H K + Sbjct: 269 GILSPQKIIKLAYEKFYK---KDKDNLDGYVAEIFIWRETSEHFCYH------NKDYDNI 319 Query: 311 TEKIEWNKDS----------HLL--QAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITA 358 +EW +DS HL + + G T +AA QL + +H +RM A Sbjct: 320 MGALEWARDSLHEHAKDEREHLYTKEELEFGKTNDSFWNAAENQLLKLNKIHGYVRMYWA 379 Query: 359 SFLVKDLLVDW--------RIGEEYFMSQLLDGDLASNNGGWQWA 395 LVK W +IG E +DG+ + G W Sbjct: 380 KQLVK-----WTKTPEEAVKIGIELNDKYSIDGNDPNGYTGVMWC 419 >gi|88604444|ref|YP_504622.1| deoxyribodipyrimidine photolyase [Methanospirillum hungatei JF-1] gi|88189906|gb|ABD42903.1| Deoxyribodipyrimidine photo-lyase type II [Methanospirillum hungatei JF-1] Length = 448 Score = 53.9 bits (128), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 92/377 (24%), Positives = 143/377 (37%), Gaps = 67/377 (17%) Query: 11 LVWLRNDLRITDNKALYAACHNSDA---KVIAVFI-------ATPEQWRQHGISARQSHF 60 L W+++ +R N AL A S+ +I VF ATP +R F Sbjct: 21 LYWMQSAVRTRYNHALEYAIERSNELKKPLIVVFCLDHSYPEATPVHYR----------F 70 Query: 61 IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120 ++ L V +SL+++GI FQ S D D C+ VT + R + R Sbjct: 71 LWEGLQDVNRSLTERGIGFQILSGSPVDIIPRIADDACMM--VTDQGWTR---LQREWRQ 125 Query: 121 KLLEKRLQHRVICKSFDDSVLLP--------PGSILNHALQMYKVYTPFRKALIQNLVQA 172 K+++ VI ++ ++++P S ++ + F LI VQ Sbjct: 126 KVIDTAPCKVVIVET---NLIVPVHVASPKEEWSAGTFRPKITRQLPAFLHPLICRHVQG 182 Query: 173 D------LRSLPVPAIR-LTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKE 225 + LPV A + TG P + F P GE A H L F E Sbjct: 183 ESTDCEPFTGLPVGAEQQFTGKPLPEDTSTQF----------LPGGENAADHYLSAFLSE 232 Query: 226 KVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNEL 285 + Y + P TS LS YL G +SP R+ E P G ++L +L Sbjct: 233 TIDRYEATHNDPTAHATSYLSAYLHFGHISPLDIALRVMEH-------PGPGTNAFLEQL 285 Query: 286 IWREFYRHLMAFYPSVCMGKPFIP-WTEK------IEWNKDSHLLQAWKQGYTGFPIIDA 338 I R H +Y + +P WT K I+ + S+ +++ T +A Sbjct: 286 IVRRELSHNFVWYNPLYDHYEGLPEWTRKSLEKHRIDTREYSYTPADFEECRTHDRAWNA 345 Query: 339 AMRQLNTIGWMHNRLRM 355 + G++H LRM Sbjct: 346 MQLSMIRTGYLHGYLRM 362 >gi|83816766|ref|YP_445872.1| deoxyribodipyrimidine photolyase [Salinibacter ruber DSM 13855] gi|83758160|gb|ABC46273.1| deoxyribodipyrimidine photolyase [Salinibacter ruber DSM 13855] Length = 462 Score = 53.9 bits (128), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 76/368 (20%), Positives = 137/368 (37%), Gaps = 43/368 (11%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 L W+ R N AL A H++ + + + + R F+ L + ++ Sbjct: 24 LYWMEQSQRAQHNPALERALHHASETGLPLLVVCGVTDDFPEATLRHHTFLLEGLQETKQ 83 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130 L+ +G+ + + D ++ L +R Y +R K R+ Sbjct: 84 RLADRGLKLVVREGAPDDVAL------AHAGAAAVLVTDRGY----LRHQKQWRARVAEE 133 Query: 131 VICK--SFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNL--------VQADLRSLPVP 180 C+ + V++P ++ + A + P ++ V+ L + Sbjct: 134 APCRVEQVEGDVVVPVETVTDKAEYAARTIRPKIHEHLERCLQLPEPVPVETPSLDLDID 193 Query: 181 AIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ 240 + R + D A+ ++P G A IL F E + Y E R+ Sbjct: 194 SGRSLDDIAAVTDQMDLDRGVGAVSDLYPGGVSEAEAILDDFLAEHLDGYDENRNQIHSH 253 Query: 241 GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELI-WREFYRHLMAFYP 299 S +S YL G +SP W L ++ V P+S S++ EL+ RE + + F P Sbjct: 254 AVSHMSKYLHYGQISP--VW--LAQQ-VRRAEGPESDIESYIEELVVRRELTMNHVHFRP 308 Query: 300 SVCMGKPFIPWTEKIEWNKDS------------HLLQAWKQGYTGFPIIDAAMRQLNTIG 347 +P EW ++S + L + G T P +AAM+++ G Sbjct: 309 DTYDSYTCLP-----EWARESLAEHADDEREYVYSLDELEGGTTHDPYWNAAMKEMRETG 363 Query: 348 WMHNRLRM 355 +MHN +RM Sbjct: 364 YMHNYMRM 371 >gi|187478088|ref|YP_786112.1| deoxyribodipyrimidine photo-lyase [Bordetella avium 197N] gi|115422674|emb|CAJ49201.1| deoxyribodipyrimidine photo-lyase [Bordetella avium 197N] Length = 407 Score = 53.9 bits (128), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 44/121 (36%), Positives = 62/121 (51%), Gaps = 14/121 (11%) Query: 328 QGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLAS 387 + TG P+ID A+R L G++HN R+ AS++V V WR ++ + LLDGDL S Sbjct: 122 EARTGLPVIDLAVRTLYASGYLHNHARLWLASYVVHARQVHWRCAADWLLGHLLDGDLGS 181 Query: 388 NNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWL 447 N+ WQW A T + + PY +FN RF P+ + P I AP+ L Sbjct: 182 NHLSWQWVAGTAS-AKPY--LFN-AENVARFAPEAWY----------SPGTPIDAPYERL 227 Query: 448 D 448 D Sbjct: 228 D 228 >gi|126735514|ref|ZP_01751259.1| probable deoxyribodipyrimidine photolyase [Roseobacter sp. CCS2] gi|126714701|gb|EBA11567.1| probable deoxyribodipyrimidine photolyase [Roseobacter sp. CCS2] Length = 487 Score = 53.5 bits (127), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 57/201 (28%), Positives = 83/201 (41%), Gaps = 18/201 (8%) Query: 206 PMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ-GTSQLSPYLSIGVLSPRQCWNRLK 264 P F A L F + + Y +R+ A + G S+LSPYL GVL PR+ ++ Sbjct: 233 PDFEPSAAAARSALDGFVTDALATYPYRRNNAADKAGVSRLSPYLHFGVLGPRKMTAAVR 292 Query: 265 EEFVDLLIKPKSGAFSWLNELI-WREFYRHLMAFYP---SVCMGKPFIPWTEKIEWNKDS 320 V K + +L+EL+ WRE++ H +A+ + P P T + D Sbjct: 293 AADVTANAK-----WKYLDELLTWREYF-HYLAYQDDNFASFRSLPDAPRTSLEAHSSDP 346 Query: 321 ----HLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK---DLLVDWRIGE 373 + L G TG +AA RQ G+MHN LRM ++K D W Sbjct: 347 RPTLYALTDLVHGNTGDETWNAAQRQWLATGYMHNNLRMYWGKQIIKWTPDPETAWDTAC 406 Query: 374 EYFMSQLLDGDLASNNGGWQW 394 LDG + G +W Sbjct: 407 YLNDRLALDGRDPATYGNMKW 427 >gi|163840007|ref|YP_001624412.1| deoxyribodipyrimidine photolyase [Renibacterium salmoninarum ATCC 33209] gi|162953483|gb|ABY22998.1| deoxyribodipyrimidine photolyase [Renibacterium salmoninarum ATCC 33209] Length = 230 Score = 53.5 bits (127), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 43/161 (26%), Positives = 73/161 (45%), Gaps = 13/161 (8%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 +VWLR++LR+TDN AL AC V+ V E R G + R +++ SL + Sbjct: 20 MVWLRDNLRLTDNPALAKACATGPTAVLYVLDEVSEGIRPLGGATR--WWLHHSLQNLAA 77 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL-QH 129 +++ G + ++ E + + +F+NR+Y E D L+ L + Sbjct: 78 EIAELGGSLILRR----GNAAEIVPEVAQKTGAEAVFWNRRYGGAERAIDSELKSALTKA 133 Query: 130 RVICKSFDDSVLLPP------GSILNHALQMYKVYTPFRKA 164 +SF ++L P G+ + YKV+TPF +A Sbjct: 134 DFTVQSFQANLLFEPWTIQPKGAGPAESSAHYKVFTPFWRA 174 >gi|213428165|ref|ZP_03360915.1| hypothetical protein SentesTyphi_22875 [Salmonella enterica subsp. enterica serovar Typhi str. E02-1180] Length = 45 Score = 53.1 bits (126), Expect = 9e-05, Method: Composition-based stats. Identities = 22/39 (56%), Positives = 30/39 (76%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATP 45 M HLVW R DLR+ DN AL AAC ++ A+V+A++I+TP Sbjct: 1 MPTHLVWFRRDLRLQDNLALAAACRDASARVLALYISTP 39 >gi|167998494|ref|XP_001751953.1| AtCRY1/HY4-like cryptochrome blue light photoreceptor protein [Physcomitrella patens subsp. patens] gi|162697051|gb|EDQ83388.1| AtCRY1/HY4-like cryptochrome blue light photoreceptor protein [Physcomitrella patens subsp. patens] Length = 413 Score = 53.1 bits (126), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 24/57 (42%), Positives = 36/57 (63%), Gaps = 6/57 (10%) Query: 412 TIQGKRFDPQGTFIRHWLPELNNVPTQYIH----APHSWLDKN--DLSLNYPLPIVD 462 +++G RFDP G ++R W+PEL +P +++H AP S L +L NYP PIV+ Sbjct: 102 SVEGYRFDPDGDYVRRWIPELARLPNEWVHHPWDAPPSALRAAGVELGTNYPRPIVE 158 >gi|294507782|ref|YP_003571840.1| deoxyribodipyrimidine photo-lyase [Salinibacter ruber M8] gi|294344110|emb|CBH24888.1| Deoxyribodipyrimidine photo-lyase [Salinibacter ruber M8] Length = 462 Score = 53.1 bits (126), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 75/368 (20%), Positives = 137/368 (37%), Gaps = 43/368 (11%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 L W+ R N AL A H++ + + + + R F+ L + ++ Sbjct: 24 LYWMEQSQRAQHNPALERALHHASETGLPLLVVCGVTDDFPEATLRHHTFLLEGLQETKQ 83 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130 L+ +G+ + + D ++ L +R Y +R + R+ Sbjct: 84 RLADRGLKLVVREGAPDDVAL------AYAGAAAVLVTDRGY----LRHQRQWRARVAEE 133 Query: 131 VICK--SFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNL--------VQADLRSLPVP 180 C+ + V++P ++ + A + P ++ V+ L + Sbjct: 134 APCRVEQVEGDVVVPVETVTDKAEYAARTIRPKMHEHLERCLQLPEPVPVETPSLDLDID 193 Query: 181 AIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ 240 + R + D A+ ++P G A IL F E + Y E R+ Sbjct: 194 SGRSLDDIEAVTDQMDLDRGVGAVSDLYPGGVSEAEAILDDFLAEHLDGYDENRNQIHSH 253 Query: 241 GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELI-WREFYRHLMAFYP 299 S +S YL G +SP W L ++ V P+S S++ EL+ RE + + F P Sbjct: 254 AVSHMSKYLHYGQISP--VW--LAQQ-VRRAEGPESDIESYIEELVVRRELTMNHVHFRP 308 Query: 300 SVCMGKPFIPWTEKIEWNKDS------------HLLQAWKQGYTGFPIIDAAMRQLNTIG 347 +P EW ++S + L + G T P +AAM+++ G Sbjct: 309 DTYDSYTCLP-----EWARESLAEHADDEREYVYSLDELEGGTTHDPYWNAAMKEMRETG 363 Query: 348 WMHNRLRM 355 +MHN +RM Sbjct: 364 YMHNYMRM 371 >gi|47212597|emb|CAF93039.1| unnamed protein product [Tetraodon nigroviridis] Length = 642 Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 35/141 (24%), Positives = 60/141 (42%), Gaps = 29/141 (20%) Query: 354 RMITASFLVK-DLLVDWRIG---------------------EEYFMSQLLDGDLASNNGG 391 R A FL + DL + W G + F LLD D + N G Sbjct: 454 RRAVACFLTRGDLWISWECGMKVGGAAWSRRRRRRLSARLLPQVFEELLLDADWSVNAGS 513 Query: 392 WQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND 451 W W + + +F+ + P G+R DP G +IR ++P L + P +YI+ P + + Sbjct: 514 WMWLSCSAFFQQ-FFKCYCPVGFGRRTDPSGDYIRRYIPILKDYPNRYIYEPWNAPEAVQ 572 Query: 452 ------LSLNYPLPIVDHKKA 466 + ++YP P++ ++ Sbjct: 573 KAANCVVGVDYPRPMIQPRRG 593 Score = 43.5 bits (101), Expect = 0.086, Method: Compositional matrix adjust. Identities = 79/335 (23%), Positives = 130/335 (38%), Gaps = 58/335 (17%) Query: 8 SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67 SVH W R LR+ DN AL A +D+ + V++ P + + F+ +L Sbjct: 5 SVH--WFRKGLRLHDNPALQEALSGADS-LRCVYVLDPWFAGAANVGINRWRFLLEALED 61 Query: 68 VQKSLSQ---------------------------KGIVFQYHQCSN--FDDSIEWLD-SY 97 + SL + + +VFQ + S L S Sbjct: 62 LDCSLKKLNSRLFVVRGQPTDVFPRLLKVGAGPVRSLVFQSADRAGAMIRASCRCLILSV 121 Query: 98 CLQQ--RVTKLFYNRQYEINEVRRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMY 155 C+ Q +VT+L + RD + K Q + +S L L+ ++M Sbjct: 122 CVPQEWKVTRLTFEYDPRAYGKERDGAIIKMAQQFGVETIVRNSHTL---YNLDRIVEMN 178 Query: 156 KVYTPFRKALIQNLV-QADLRSLPVPAI------RLTGPVTPS-----NIPRFFDYPFQ- 202 P Q +V + +L P+P++ + PV + +IP + F+ Sbjct: 179 NNSPPLTFKRFQTIVSRLELPRRPLPSVTQQQMDKCGTPVADNHDQLYSIPSLEELGFRT 238 Query: 203 -AIDP-MFPIGEQNALHILRKFCKEKVYY----YVEQRDIPAIQGTSQLSPYLSIGVLSP 256 + P ++ GE AL LRK ++KV+ + + LSPYL G LS Sbjct: 239 GGLAPAVWRGGESEALERLRKHLEKKVWVSHLEHSRANTCSLYASPAGLSPYLRFGCLSC 298 Query: 257 RQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFY 291 R + L+E ++ L K S S +L+WREF+ Sbjct: 299 RVFYYNLREHYIR-LCKGCSPPLSLFGQLLWREFF 332 >gi|94971523|ref|YP_593571.1| deoxyribodipyrimidine photo-lyase type II [Candidatus Koribacter versatilis Ellin345] gi|94553573|gb|ABF43497.1| Deoxyribodipyrimidine photo-lyase type II [Candidatus Koribacter versatilis Ellin345] Length = 446 Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 96/419 (22%), Positives = 161/419 (38%), Gaps = 43/419 (10%) Query: 11 LVWLRNDLRITDNKALYAACHNSDA-KVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69 + W++ R DN AL A ++A K+ V P + H + R F+ + + Sbjct: 1 MYWMQRAQRAFDNPALDVAVQAANALKLPCVIFFAPVPFYPHA-NLRHYAFLQQGIPDIA 59 Query: 70 KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRR-DKLLEKRLQ 128 + ++ I F + L +C + + L + + E+R ++ K+L Sbjct: 60 EMAEERDIGFVLRRFPEHS-----LIKFCDEVKAA-LVIGDENPMRELREWREIAAKKL- 112 Query: 129 HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQA-----------DLRSL 177 RV + D V++P +L ++ P KA + L+ R L Sbjct: 113 -RVPLWTVDADVIVP-SKLLGKEQYAARIIRPRLKAHFKELLVPCENPRAHVKWHAARGL 170 Query: 178 PVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIP 237 R T +T D + +D F G + AL +L +F K + Y E+ + Sbjct: 171 QQLDWRGTEDITEG---WEIDRSVKPVDS-FHGGTREALRLLDEFVKHGLTRYPERHNQA 226 Query: 238 AIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELI-WREFYRHLMA 296 GT++LSPYL G + P +++ V P+ +L+++I WRE +++ Sbjct: 227 DENGTARLSPYLHFGHIGPHTVALAVEKSKV-----PREAKDDFLDQVITWRELAINMVH 281 Query: 297 FYPSVCMGKPFIPWTEKI--EWNKDSHLLQAWKQGYTGFPIID----AAMRQLNTIGWMH 350 F P + W K E KD +Q + D AA Q+ GWMH Sbjct: 282 FNPLYDTLECGENWAHKTLGEHAKDPRPIQYTPKQLEAAETYDDLWNAAQLQMVHAGWMH 341 Query: 351 NRLRMITASFLV---KDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYF 406 N +RM A ++ K V + LDG + G WA G P+F Sbjct: 342 NYMRMYWAKKILEWSKSPQVAYNTAVYLNDKYFLDGRDPNGYAGIAWAI-VGKFDRPWF 399 >gi|315425180|dbj|BAJ46850.1| deoxyribodipyrimidine photo-lyase [Candidatus Caldiarchaeum subterraneum] Length = 360 Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 47/177 (26%), Positives = 78/177 (44%), Gaps = 36/177 (20%) Query: 201 FQAIDPMFPI-----GEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLS 255 F +I+ + P+ GE A L F E++ Y +R P + S+LSPYL G++S Sbjct: 111 FGSIEFVEPVKDVVGGEDEAHKRLETFVGERLDRYAAERSDPGSEACSELSPYLRYGMIS 170 Query: 256 PRQCWNRLKEEFVDLLIKPKSGAFSWLNEL-IWREFYRHLMAFYPSVCMGKPFIPWTEKI 314 P Q R+ E + S +NEL +WRE R+ G+ + P+ EK Sbjct: 171 PVQVLKRVFE----YRRRGDVNVESLINELVVWRELARN----------GEVYNPFFEKY 216 Query: 315 ----EWNKDSHLLQAWKQGYTGFPIID------------AAMRQLNTIGWMHNRLRM 355 EW +++ + A + + + + AA ++L G +HN +RM Sbjct: 217 EGLPEWARETLSIHAGDRREQVYSMSELERADTHDVYWNAAQQELLATGKIHNYMRM 273 >gi|224068346|ref|XP_002302716.1| predicted protein [Populus trichocarpa] gi|222844442|gb|EEE81989.1| predicted protein [Populus trichocarpa] Length = 471 Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 77/340 (22%), Positives = 135/340 (39%), Gaps = 67/340 (19%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISAR--------QSHFIY 62 +VW RNDLR+ DN+ L +A +N V+ V+ P R +G S+ +++F+ Sbjct: 127 IVWFRNDLRVHDNECLNSA-NNDSMSVLPVYCFDP---RDYGKSSSGFDKTGPYRANFLI 182 Query: 63 ASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKL 122 S+ ++K+L +G +E + ++ +R+ +EV+ ++ Sbjct: 183 ESVSDLRKNLQARGSDLVVRVGRPETVLVELAKAI----GADAVYAHREVSHDEVKAEEK 238 Query: 123 LEKRLQHR-VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKAL--------IQNLVQAD 173 +E+ ++ V K F S L + M Y F++ + I+ L Q Sbjct: 239 IEELMKDEGVEVKYFWGSTLYHLDDLPFKLEDMPSNYGGFKEKVQGLEIRKTIETLDQ-- 296 Query: 174 LRSLPVPAIRLTGPVTPSNIPRFFDY---PFQ------------------AIDPMFPIGE 212 L+ LP G V P +IP D P Q A + GE Sbjct: 297 LKGLPS-----RGDVEPGDIPNLLDLGLNPAQGTCCIVSLNTCQSQDGKAAANASMVGGE 351 Query: 213 QNALHILRKF---CKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVD 269 AL L KF C+ + I + ++SP+L++G +S R ++ LK+ Sbjct: 352 TEALQRLNKFAAECQAQPPKGGSHESIYGANFSCKISPWLTMGCVSARSMFDELKKTATR 411 Query: 270 LLIKP----------KSGAFSWLN-ELIWREFYRHLMAFY 298 + +WL EL+WR+F+R + Y Sbjct: 412 TISAASNHNSGGSSSPGAGMNWLMFELMWRDFFRFITKKY 451 >gi|298530238|ref|ZP_07017640.1| deoxyribodipyrimidine photolyase [Desulfonatronospira thiodismutans ASO3-1] gi|298509612|gb|EFI33516.1| deoxyribodipyrimidine photolyase [Desulfonatronospira thiodismutans ASO3-1] Length = 448 Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 56/200 (28%), Positives = 91/200 (45%), Gaps = 15/200 (7%) Query: 173 DLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPM--FPIGEQNALHILRKFCKEKVYYY 230 D++ P PA TG V P + + D + I P+ G A +L F ++ Y Sbjct: 180 DVKPHPYPAQAGTG-VDPDGLLQEMDLD-KTITPVRWLSPGPAGAGEVLDDFMAHRLSLY 237 Query: 231 VEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELI-WRE 289 EQR+ P +Q S LSPYL G S ++ ++K++ L P ++L ELI RE Sbjct: 238 HEQRNDPNMQVLSNLSPYLHFGHTSAQRVALQVKKQ----LDTPVQSREAFLEELIVRRE 293 Query: 290 FYRHLMAFYPSVCMGKPFIPWTEKI--EWNKDS----HLLQAWKQGYTGFPIIDAAMRQL 343 + + + + W +K + DS + QA +QG T P+ +AA ++ Sbjct: 294 LSDNFCHYNQNYDNFQGLPAWAQKTLDKHRSDSRDYLYEPQALEQGLTHDPLWNAAQTEM 353 Query: 344 NTIGWMHNRLRMITASFLVK 363 G MH +RM A +++ Sbjct: 354 VKSGKMHGYMRMYWAKKILE 373 >gi|125543822|gb|EAY89961.1| hypothetical protein OsI_11521 [Oryza sativa Indica Group] Length = 451 Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 75/342 (21%), Positives = 138/342 (40%), Gaps = 53/342 (15%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHG-----ISARQSHFIYASL 65 LVW R DLR+ D++ L+AA S + ++ VF+ P + + ++ F+ S+ Sbjct: 113 LVWFRADLRLHDHEPLHAAVGAS-SSLLPVFVFDPRDFGKSPSGFDRTGPYRAGFLLDSV 171 Query: 66 LQVQKSLSQKG--IVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLL 123 +++ L +G +V + + + +F + + +E R ++ + Sbjct: 172 ADLRRGLRARGGDLVVRVGRPEVV------IPELARAAGAEAVFAHGEVSRDECRAEEKV 225 Query: 124 EKRLQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKAL----IQNLVQA--DLRS 176 K ++ I K F S L + M Y FR+A+ ++ ++ A +++ Sbjct: 226 SKAVEKEGIEVKYFWGSTLYHLDDLPFRLEDMPSNYGGFREAVKGLDVRKVLDAPEEVKC 285 Query: 177 LPVPAIRLTGPVTPSNIPRFFDYPFQA-----------IDPMFPIGEQNALHILRKFCKE 225 +P+ + + P IP + A + GE AL L+KF E Sbjct: 286 VPMKNV-----LEPGEIPTLAELGLTAPPAMAHGSKAAVGSTLIGGEAEALERLKKFASE 340 Query: 226 ------KVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLL---IKPKS 276 K + I + ++SP+L+ G LSPR + LK+ + PK+ Sbjct: 341 CCMQPNKGDKDSTRDSIYGANFSCKISPWLATGCLSPRFMYEELKKHASRAIPSGSTPKN 400 Query: 277 G------AFSWLN-ELIWREFYRHLMAFYPSVCMGKPFIPWT 311 G +WL EL+WR+F+R + Y S P T Sbjct: 401 GDGTSDAGTNWLMFELLWRDFFRFITKKYSSAQKTSEVAPAT 442 >gi|115452953|ref|NP_001050077.1| Os03g0343400 [Oryza sativa Japonica Group] gi|108708083|gb|ABF95878.1| photolyase/blue-light receptor PHR2, putative, expressed [Oryza sativa Japonica Group] gi|113548548|dbj|BAF11991.1| Os03g0343400 [Oryza sativa Japonica Group] gi|125586213|gb|EAZ26877.1| hypothetical protein OsJ_10801 [Oryza sativa Japonica Group] Length = 459 Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 75/342 (21%), Positives = 138/342 (40%), Gaps = 53/342 (15%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHG-----ISARQSHFIYASL 65 LVW R DLR+ D++ L+AA S + ++ VF+ P + + ++ F+ S+ Sbjct: 121 LVWFRADLRLHDHEPLHAAVGAS-SSLLPVFVFDPRDFGKSPSGFDRTGPYRAGFLLDSV 179 Query: 66 LQVQKSLSQKG--IVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLL 123 +++ L +G +V + + + +F + + +E R ++ + Sbjct: 180 ADLRRGLRARGGDLVVRVGRPEVV------IPELARAAGAEAVFAHGEVSRDECRAEEKV 233 Query: 124 EKRLQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKAL----IQNLVQA--DLRS 176 K ++ I K F S L + M Y FR+A+ ++ ++ A +++ Sbjct: 234 SKAVEKEGIEVKYFWGSTLYHLDDLPFRLEDMPSNYGGFREAVKGLDVRKVLDAPEEVKC 293 Query: 177 LPVPAIRLTGPVTPSNIPRFFDYPFQA-----------IDPMFPIGEQNALHILRKFCKE 225 +P+ + + P IP + A + GE AL L+KF E Sbjct: 294 VPMKNV-----LEPGEIPTLAELGLTAPPAMAHGSKAAVGSTLIGGEAEALERLKKFASE 348 Query: 226 ------KVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLL---IKPKS 276 K + I + ++SP+L+ G LSPR + LK+ + PK+ Sbjct: 349 CCMQPNKGDKDSTRDSIYGANFSCKISPWLATGCLSPRFMYEELKKHASRAIPSGSTPKN 408 Query: 277 G------AFSWLN-ELIWREFYRHLMAFYPSVCMGKPFIPWT 311 G +WL EL+WR+F+R + Y S P T Sbjct: 409 GDGTSDAGTNWLMFELLWRDFFRFITKKYSSAQKTSEVAPAT 450 >gi|258611843|ref|ZP_05711678.1| deoxyribodipyrimidine photolyase [Listeria monocytogenes FSL R2-503] gi|258606567|gb|EEW19175.1| deoxyribodipyrimidine photolyase [Listeria monocytogenes FSL R2-503] Length = 164 Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 46/177 (25%), Positives = 80/177 (45%), Gaps = 27/177 (15%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSH-FIYASLLQVQ 69 ++W R DLR+ DNKALY AC D ++ +F P Q+ I+ SH +AS+ + Sbjct: 4 VMWFRRDLRVNDNKALYHACKEDD--LLLLFQVNPAQF----ITGSPSHQGFFASVAHFK 57 Query: 70 KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRV------TKLFYNRQYEINEVRRDKLL 123 + + + H F + IE C QQ K+++NR +RD+ Sbjct: 58 QEIDKTA-----HLQIMFGEPIE-----CFQQLKDSLPSWDKVYFNRDETGYGAKRDEAA 107 Query: 124 EKRL-QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKAL---IQNLVQADLRS 176 + + ++ ++F DS L + + YK++T K +N VQ+D ++ Sbjct: 108 QAFFDEQKIEVQAFHDSYLHSAEEVKKSPTEYYKIFTLIIKMARRNKRNAVQSDFKA 164 >gi|295113008|emb|CBL31645.1| Deoxyribodipyrimidine photolyase [Enterococcus sp. 7L76] Length = 256 Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 63/256 (24%), Positives = 108/256 (42%), Gaps = 33/256 (12%) Query: 11 LVWLRNDLRITDNKALYAACHNSDA-KVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69 ++W R DLR+ DNKAL A NS A ++I +F P+Q+ Q SA + F +ASL ++ Sbjct: 4 VMWFRRDLRLQDNKALAHALQNSAADELILLFQMNPQQFIQE--SANHNAF-FASLASLK 60 Query: 70 KSLSQKG---IVFQYHQCSNFDDSIEWLDSYCLQQRV----TKLFYNRQYEINEVRRDKL 122 + + Q+ I+ E LD + +R +++N +RD+ Sbjct: 61 ERIDQEAHLQIMVG-----------EPLDLFSRLKRKLPDWQAIYFNEDTCGFGAKRDQQ 109 Query: 123 LEKRLQHRVICK-SFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPA 181 + + I SF D+ L I + Y+V+TP+ N + + P+P Sbjct: 110 AMRFFEENNIQSFSFQDAYLHGSEEIKKNDGSKYQVFTPY-----YNKWKEAPKETPIPV 164 Query: 182 IR-----LTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDI 236 + + P + + + + +GE+ A L F +K+ Y +RD Sbjct: 165 SYTAEKIFSACLFPEEEAAYREQIARIPLTHYSVGEETARRRLNTFIDQKLQSYENKRDF 224 Query: 237 PAIQGTSQLSPYLSIG 252 P TS LS + G Sbjct: 225 PYQDQTSHLSTFFKNG 240 >gi|73668073|ref|YP_304088.1| deoxyribodipyrimidine photo-lyase type II [Methanosarcina barkeri str. Fusaro] gi|72395235|gb|AAZ69508.1| Deoxyribodipyrimidine photo-lyase type II [Methanosarcina barkeri str. Fusaro] Length = 462 Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 84/373 (22%), Positives = 149/373 (39%), Gaps = 47/373 (12%) Query: 13 WLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQKSL 72 W+ D R+ DN AL A + + VF+ + G RQ F+ L +V+ +L Sbjct: 22 WMSRDQRVEDNWALLFARKIALEADVPVFVVFCLVDKFLGAIRRQYEFMLKGLQEVEATL 81 Query: 73 SQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHRVI 132 ++K I F + Q + ++++ Y + +T + + +R + +++ + Sbjct: 82 ARKKIPFFFLQGDPEEKIPDFIEKYGIGTLIT--------DFSPLRIKRTWTEKVASSIK 133 Query: 133 CKSF--DDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP--- 187 F D ++P Q Y +T FR L++ L+ L P L P Sbjct: 134 VPFFEVDAHNVVPCWEASKK--QEYAAHT-FRPKLLR-LLPEFLTEYPELETNLEFPEIA 189 Query: 188 VTPSNIPRFFDYPFQAID------------------PMFPIGEQNALHILRKFCKEKVYY 229 V RF + I +F GE A ++ +F K+ Sbjct: 190 VRSGKAERFSEVQKSGIGTRLPGEFLEKKAGFLPDLALFEAGETAARKVMDEFLTNKLDS 249 Query: 230 YVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWR- 288 Y R+ P S LSPYL G +S ++ ++++ DL K +L+EL+ R Sbjct: 250 YSSLRNDPTKDALSNLSPYLHFGQISAQRVALKVEKAKADLESKR-----VFLDELLVRK 304 Query: 289 EFYRHLMAFYPSVCMGKPFIPWTEKI----EWNKDSHL--LQAWKQGYTGFPIIDAAMRQ 342 E + + P F W +K ++ SH+ L+ + G T P+ +A+ + Sbjct: 305 ELADNFCYYNPFYDSFDGFPDWAKKTLNSHRRDQRSHIFTLEELETGRTYDPLWNASQIE 364 Query: 343 LNTIGWMHNRLRM 355 L G MH+ +RM Sbjct: 365 LIRKGKMHSYMRM 377 >gi|320166331|gb|EFW43230.1| photolyase [Capsaspora owczarzaki ATCC 30864] Length = 559 Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 27/87 (31%), Positives = 46/87 (52%), Gaps = 5/87 (5%) Query: 242 TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSV 301 +S +SPYL G +SPR+ + + + ++D + P S L +L WREF+ + A P+ Sbjct: 233 SSVMSPYLRFGCVSPRRFFFEINKVYIDSGVTPTQPPVSLLGQLYWREFFYLVAAGTPNF 292 Query: 302 --CMGKPFIPWTEKIEWNKDSHLLQAW 326 G P ++I+W+ + L AW Sbjct: 293 DRAAGNPIC---KQIQWDVNPEYLAAW 316 Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust. Identities = 23/71 (32%), Positives = 39/71 (54%), Gaps = 10/71 (14%) Query: 418 FDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND--------LSLNYPLPIVDHKKACHH 469 +DP+G F+R ++P L N P++YI+ P W + + ++YP PIVDH++ C Sbjct: 318 YDPEGKFVRRFVPALRNFPSEYIYMP--WSAPLEVQREAGCIVGVDYPKPIVDHEQVCRT 375 Query: 470 TLNQYYAAKKQ 480 + + A Q Sbjct: 376 NMERMRDAYAQ 386 >gi|303245763|ref|ZP_07332046.1| deoxyribodipyrimidine photolyase [Desulfovibrio fructosovorans JJ] gi|302493026|gb|EFL52891.1| deoxyribodipyrimidine photolyase [Desulfovibrio fructosovorans JJ] Length = 453 Score = 50.8 bits (120), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 83/376 (22%), Positives = 131/376 (34%), Gaps = 66/376 (17%) Query: 13 WLRNDLRITDNKALYAACH---NSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69 W+ D R DN AL A S A ++ VF P G + RQ F+ A L + + Sbjct: 24 WMSRDQRAADNWALLHAASLAGESGAPLVVVFALAPAY---PGATRRQYAFMLAGLAETE 80 Query: 70 KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH 129 +L I +L S VT D L KR+ Sbjct: 81 AALRAHSIPLAVLTGEPGFTVPAFLHSVDAGVCVTDF-------------DPLRVKRVWK 127 Query: 130 RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189 + + PG+++ + + V F + + A LR P I P Sbjct: 128 AAVA-------VASPGALVE--VDAHNVAPCFLASQKREYAAATLR----PKIHRLLPEF 174 Query: 190 PSNIPRFFDYPFQAIDPMFPI-----------------------GEQNALHILRKFCKEK 226 P +P +D P+ G A +L F +++ Sbjct: 175 LKPFPDLPTFPAANLDGFAPVDWRAAADFVQADPSVPPVTGIVPGSAAATQVLDDFLRDR 234 Query: 227 VYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNEL- 285 + Y +R+ P TS LSPY G L+P+ R ++ + K GA ++L EL Sbjct: 235 LEGYAARRNDPNAGATSGLSPYFHFGQLAPQ----RAALATLEARSRAKEGADAFLEELV 290 Query: 286 IWREFYRHLMAFYPSVCMGKPFIPWTEKI--EWNKDS----HLLQAWKQGYTGFPIIDAA 339 + RE + + P + W K DS + + + T + +AA Sbjct: 291 VRRELADNFCLYEPEYDSFEALPEWARKTLAAHAADSRPYLYDRETFAAATTHSALWNAA 350 Query: 340 MRQLNTIGWMHNRLRM 355 RQL+ G +H +RM Sbjct: 351 QRQLSREGRIHGYMRM 366 >gi|189499730|ref|YP_001959200.1| deoxyribodipyrimidine photolyase [Chlorobium phaeobacteroides BS1] gi|189495171|gb|ACE03719.1| deoxyribodipyrimidine photolyase [Chlorobium phaeobacteroides BS1] Length = 451 Score = 50.8 bits (120), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 85/364 (23%), Positives = 138/364 (37%), Gaps = 43/364 (11%) Query: 13 WLRNDLRITDNKALYAA---CHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69 W+ D R +N AL A ++ +I F P + R F+ L+QV+ Sbjct: 23 WMSRDQRAENNWALLFAEQLSMQNNQPLIVAFNLVPSYPEA---TLRHYDFMLKGLMQVE 79 Query: 70 KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLE----- 124 + L I F N + I + C V F +I+E ++K+LE Sbjct: 80 QQLEALNIPFLV-LSGNPEREIPRFTASCRAGAVVTDF--SPLKISETWKNKVLEHIPIP 136 Query: 125 --KRLQHRVI-CKSFDDSVLLPPGSI---LNHALQMYKVYTPFRKALIQNLVQADLRSLP 178 + H ++ C++ + + +I +N L+ + P K Q+ R Sbjct: 137 FYEVDAHNIVPCRTASNKLEFSARTIRPKINRLLETFLTGFPELKG------QSPERKSA 190 Query: 179 VPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPA 238 VP + I R P IDP G A L+KF ++ Y + R+ P Sbjct: 191 VPPVEWNKLYETLRINRAV-APVTWIDP----GGDAATKTLKKFIDHRLASYPKLRNDPN 245 Query: 239 IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNEL-IWREFYRHLMAF 297 S LSPYL G +S + ++ P+S +L EL I RE + + Sbjct: 246 AHAVSDLSPYLHFGQISAQHVAREIQASDA-----PRSAKDVFLEELVIRRELADNYCLY 300 Query: 298 YPSVCMGKPFIPW-TEKIEWNKDS-----HLLQAWKQGYTGFPIIDAAMRQLNTIGWMHN 351 K PW E +E ++ + ++ T P+ +AA ++L G MH Sbjct: 301 NKHYDSLKGIHPWAAETLERHRTDTREFLYTADDLEKASTHDPLWNAAQKELCNTGKMHG 360 Query: 352 RLRM 355 LRM Sbjct: 361 YLRM 364 >gi|332295845|ref|YP_004437768.1| DNA photolyase FAD-binding protein [Thermodesulfobium narugense DSM 14796] gi|332178948|gb|AEE14637.1| DNA photolyase FAD-binding protein [Thermodesulfobium narugense DSM 14796] Length = 443 Score = 50.8 bits (120), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 40/153 (26%), Positives = 69/153 (45%), Gaps = 13/153 (8%) Query: 211 GEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDL 270 G + A IL F +K YY + R+ P + S +SPYL G +SP + + L ++ Sbjct: 216 GYKEAKKILDYFVSKKFKYYKDNRNNPEKESESNISPYLHFGNISPLEILDTL-----EI 270 Query: 271 LIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFI--PWTEKIEW-NKDS-----HL 322 K +S+ E++ R H +Y + + W K + +KD + Sbjct: 271 FDKSSENYYSFFEEMVIRRELAHNFTYYSNDLNNLENLLPAWAFKTFYEHKDDKREYVYS 330 Query: 323 LQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRM 355 L+ ++ T I +A+ R+L G +HN +RM Sbjct: 331 LEEFENSKTHDEIWNASQRELKKRGKIHNYMRM 363 >gi|78186406|ref|YP_374449.1| DNA photolyase, class 2 [Chlorobium luteolum DSM 273] gi|78166308|gb|ABB23406.1| Deoxyribodipyrimidine photo-lyase type II [Chlorobium luteolum DSM 273] Length = 495 Score = 50.4 bits (119), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 59/253 (23%), Positives = 106/253 (41%), Gaps = 27/253 (10%) Query: 11 LVWLRNDLRITDNKALYAACHNS---DAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67 + W+ D R+ N+AL+ A + A +I F +P G + RQ F+ L++ Sbjct: 21 IYWMSRDQRVEQNRALHYARFRAVADGAPLIVAFTLSPSF---IGATFRQYDFMLRGLME 77 Query: 68 VQKSLSQKGIVFQYHQCSNFDDSI---EWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLE 124 V++ L + I F + + + E + S C+ + L +R+++ Sbjct: 78 VERRLRELEIGFVLLEGDPAEAIVRFRESIGSGCVVTDYSPLRISRRWKATAA------- 130 Query: 125 KRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL 184 V+ D ++P ++ Q Y T FR + + L + + PV + Sbjct: 131 --AALPVLFIEVDAHNIVP--CLMASPKQEYSART-FRPKVNRLLGEFLIALPPVERVPA 185 Query: 185 TGPVTPSNIPRF-----FDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAI 239 + P P++ R + P + P GE A+ L F +E++ +Y E+R+ P Sbjct: 186 SEPWAPTDWERVRARLPVERPAGTVRHPQP-GEAAAIRHLETFIRERLAWYGERRNDPNA 244 Query: 240 QGTSQLSPYLSIG 252 TS LSPYL G Sbjct: 245 DATSGLSPYLHFG 257 >gi|312881041|ref|ZP_07740841.1| Deoxyribodipyrimidine photo-lyase type II [Aminomonas paucivorans DSM 12260] gi|310784332|gb|EFQ24730.1| Deoxyribodipyrimidine photo-lyase type II [Aminomonas paucivorans DSM 12260] Length = 464 Score = 50.4 bits (119), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 45/156 (28%), Positives = 64/156 (41%), Gaps = 14/156 (8%) Query: 208 FPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSP-RQCWNRLKEE 266 P G L F +E + Y R+ P +G S LSPYL G +SP R W L+ + Sbjct: 226 LPPGSAAGQARLEAFLREGLPRYARDRNDPLREGQSGLSPYLHFGQISPQRAAWEVLRAD 285 Query: 267 FVDLLIKPKSGAFSWLNELIWR-EFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDS----- 320 P ++L EL+ R E + P + F W K S Sbjct: 286 ------APPEDREAFLEELVVRGELAENFCLHTPGYDTVEAFPDWARKTLAAHASDRRPA 339 Query: 321 -HLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRM 355 + L+ ++G T P+ +AA R+L G M LRM Sbjct: 340 LYSLRELEEGRTHDPLWNAAQRELVLTGRMPGYLRM 375 >gi|113955504|ref|YP_730566.1| deoxyribodipyrimidine photolyase family protein [Synechococcus sp. CC9311] gi|113882855|gb|ABI47813.1| deoxyribodipyrimidine photolyase family protein [Synechococcus sp. CC9311] Length = 468 Score = 50.4 bits (119), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 82/348 (23%), Positives = 141/348 (40%), Gaps = 41/348 (11%) Query: 28 AACHNSDAKVIA--VFIATPEQWRQHGISARQSHFIYASLLQVQKSLSQKGI-VFQYHQC 84 C N +IA + + QW I R+ S+L QK L KG VF Sbjct: 17 GICDNRSIALIADGLILGGDPQWPL-TIHPRKLQLHQESMLAYQKHLELKGFSVFTLTPK 75 Query: 85 SNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHRVICKSFDDSVLLPP 144 N S L ++ Y Y +N + D LL KR+++ + + +VL P Sbjct: 76 QNQQTS-------DLLNQLVDSGYKTFYLVNPI--DDLLSKRVRNTLERRHCVLNVL-PT 125 Query: 145 GSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTP---------SNIPR 195 +L M + + RK ++ N Q + L V PV +P+ Sbjct: 126 PMLLTPTEVMDEHFNGRRKPMMANFYQMQRKRLGVLIDDQGAPVGGRWSYDADNRKKLPK 185 Query: 196 FFDYPFQ-AIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPA----IQGTSQLSPYLS 250 + P + +ID P+ ++A L F ++++ + D + + S L+P L+ Sbjct: 186 GINVPEEPSID--LPVDHRSAKQWLDTFLEQRLSGFGTFEDAISSKHRVMWHSVLTPMLN 243 Query: 251 IGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELI-WREFYRHLMAFYPSVCMGKPFIP 309 +G+L+P+Q N+ + P + +L ++I WREF + + F Sbjct: 244 LGLLTPQQVLNQ-TLAVAETSEIPLNSLEGFLRQIIGWREFMAAMYLRHGVTMRNSNF-- 300 Query: 310 WTEKIEWNKDSH-LLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMI 356 WN D + A+ QG TG P ID A+++ G+ H+ R++ Sbjct: 301 ------WNFDDRPIPDAFYQGTTGLPPIDDAIKRALNTGYCHHIERLM 342 >gi|332703027|ref|ZP_08423115.1| DNA photolyase, FAD-binding protein [Desulfovibrio africanus str. Walvis Bay] gi|332553176|gb|EGJ50220.1| DNA photolyase, FAD-binding protein [Desulfovibrio africanus str. Walvis Bay] Length = 465 Score = 50.1 bits (118), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 93/431 (21%), Positives = 165/431 (38%), Gaps = 78/431 (18%) Query: 11 LVWLRNDLRITDNKALYAA---CHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67 L W+ + R+ DN L A + D + + P+ + + G+ RQ F+ A L + Sbjct: 23 LYWMHREHRVNDNWGLLRARELAVDRDVPLAVAYGLAPD-YLEAGL--RQYAFLLAGLRE 79 Query: 68 VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127 V+ L GI F + + + I L Y + F + ++R L Sbjct: 80 VEHGLEAIGIPF-FLLLGDPAEVIPDLARYLAVGAIITDF-----DPLRIKRGWLKRIAA 133 Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187 + ++ + D ++P ++ + + P I L+ L ++P Sbjct: 134 EVQIAVEEVDSRNIVPCRAVSEKKEWAARTFRP----KIHRLLPEFLTAIPT-------- 181 Query: 188 VTPSNIPRFFDYPF----QAIDPMF-----------PIGEQNALHILRKFCKEKVYYYVE 232 + P +P D+P QA+D + GE A +L +F E++ Y Sbjct: 182 LKPQTVPWNLDWPANDWSQAMDSLKVSSDVGRLSGPRSGELAAGALLAEFTAERLSGYAV 241 Query: 233 QRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLI----KPKSGAFSWLNELI-W 287 R+ P TS+LS +L G+LS ++ V L++ P+ ++L +L+ Sbjct: 242 GRNDPNGGATSRLSAHLHFGMLSAQR---------VALVVIQADAPQEDKDAFLEQLVVR 292 Query: 288 REFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSH---------LLQAWKQGYTGFPIIDA 338 RE + P+ + F W + D+H +Q T P+ +A Sbjct: 293 RELAENFCLHEPAYDSAESFPDWARR---TLDAHQGDPRPYLYSRDELEQACTHDPLWNA 349 Query: 339 AMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQL--------LDGDLASNNG 390 A R++ G+MH LRM + K +L +W E M+ LDG + Sbjct: 350 AQREMLATGYMHGYLRM----YWAKKIL-EWSKSPEEAMAVAVRLNDRWELDGRDPNGYA 404 Query: 391 GWQWAASTGND 401 G WA +D Sbjct: 405 GLAWAIGGVHD 415 >gi|145544633|ref|XP_001458001.1| hypothetical protein [Paramecium tetraurelia strain d4-2] gi|124425820|emb|CAK90604.1| unnamed protein product [Paramecium tetraurelia] Length = 453 Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust. Identities = 69/290 (23%), Positives = 112/290 (38%), Gaps = 37/290 (12%) Query: 13 WLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQKSL 72 W++ R N AL A ++ + I +F + + R HF+ L Q++ SL Sbjct: 23 WIQASQRTKYNHALELAIQKANQEQIPLFCFFGLT-KYPAANQRPYHFMLEGLQQLKTSL 81 Query: 73 SQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHRVI 132 + + I+F + S D +I + Q L + Y +R K K++ + Sbjct: 82 ADRKILFGVAKQSPDDLAI------SIAQNAKLLIVDCGY----LRIQKQWRKKVADTID 131 Query: 133 CK--SFDDSVLLPPGSILNHALQMYKVYTP--------FRKALIQNLVQADLRSLPVPAI 182 C+ + VL+P K P F K L + + + LP Sbjct: 132 CQFIQVETDVLVPVEQASQKEEWAAKTIRPKIQSLTKYFAKELNEETLVKQMDKLPFQEY 191 Query: 183 RLTGPVTPSNIPRFFDY----PFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPA 238 + SNI + D +I F GE A L +F +K+ Y + R+ P+ Sbjct: 192 DI------SNITKVIDDLGVDKSVSIVQQFKGGEIEAQKRLEEFLNKKLKNYAKNRNDPS 245 Query: 239 IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWR 288 + TS LSPYL G++SP + + P S+L ELI R Sbjct: 246 LNATSNLSPYLHFGMISPLHIY------LEAMKFPPSESRESFLEELIVR 289 >gi|183221861|ref|YP_001839857.1| putative deoxyribodipyrimidine photo-lyase [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] gi|189911933|ref|YP_001963488.1| deoxyribodipyrimidine photolyase-like protein [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|167776609|gb|ABZ94910.1| Deoxyribodipyrimidine photolyase-related protein [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|167780283|gb|ABZ98581.1| Putative deoxyribodipyrimidine photo-lyase [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] Length = 499 Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust. Identities = 48/196 (24%), Positives = 86/196 (43%), Gaps = 22/196 (11%) Query: 196 FFDYPFQAIDPMFPIGEQNALHILRKFCKEKV-----YYYVEQRDIPAIQGTSQLSPYLS 250 F ++P D P + A L+ F KE+ Y D P +Q S L+P+L+ Sbjct: 214 FPNHPGNTKDFWLPTDRKGAKLWLQDFLKERFVQFGPYEDAFSLDFPFLQ-HSVLTPFLN 272 Query: 251 IGVLSPRQCWNRLKEEFVDLLIK---PKSGAFSWLNELI-WREFYRHLMAFYPSVCMGKP 306 +G+L+P++ + E +D K P ++ ++I WREF R Y + + Sbjct: 273 VGLLTPKE----VIESTLDYAKKNSVPMESLEGFIRQIIGWREFIR---GIYQNFGAKQE 325 Query: 307 FIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLL 366 I + + L + W G TG P +D +++ N G+ H+ R++ L+ Sbjct: 326 SINY-----FGHKRKLTKHWYDGTTGIPPLDFVIQKCNLYGYAHHIERLMVVGSLMVLFE 380 Query: 367 VDWRIGEEYFMSQLLD 382 +D + +FM +D Sbjct: 381 IDPKDAYRWFMEMFID 396 >gi|322433858|ref|YP_004216070.1| DNA photolyase FAD-binding protein [Acidobacterium sp. MP5ACTX9] gi|321161585|gb|ADW67290.1| DNA photolyase FAD-binding protein [Acidobacterium sp. MP5ACTX9] Length = 470 Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust. Identities = 65/247 (26%), Positives = 102/247 (41%), Gaps = 31/247 (12%) Query: 211 GEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDL 270 G L L++F + + Y QR+ P GTS +SPYL G L P Q + Sbjct: 229 GTHAGLAQLKRFTTKLLGDYEVQRNKPEADGTSSMSPYLHYGHLGP-QTIALAVDAAAKA 287 Query: 271 LIKPKSGAFSWLNELI-WREFYRHLMAFYPSVCMGKPFIPWTEKI--EWNKDS----HLL 323 K +S S+ NELI WRE + + F + W +K E +D + Sbjct: 288 NPKLQSARDSYFNELIAWRELAVNFVRFSSVYDTAECAENWAQKTIAEHARDEREHIYTT 347 Query: 324 QAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK-------DLLVDWRIGEEYF 376 + + T + +AA Q+ GWMHN +RM A +++ + V + ++YF Sbjct: 348 KQLEFAETYDTLWNAAQIQMVRHGWMHNYMRMYWAKKILEWTPDVDTAMKVCVYLNDKYF 407 Query: 377 MSQLLDGDLASNNGGWQWAASTGNDSV----PYF---RIFNPTIQGKRFDPQGTFIRHWL 429 +DG + G WA D P F R + K+FD + +IR Sbjct: 408 ----IDGRDPNGYAGIAWAILGKFDRAWGTRPVFGKRRYMSGASTSKKFDSKA-YIR--- 459 Query: 430 PELNNVP 436 ++N +P Sbjct: 460 -QMNALP 465 >gi|118580428|ref|YP_901678.1| deoxyribodipyrimidine photolyase [Pelobacter propionicus DSM 2379] gi|118503138|gb|ABK99620.1| Deoxyribodipyrimidine photo-lyase type II [Pelobacter propionicus DSM 2379] Length = 450 Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust. Identities = 108/458 (23%), Positives = 173/458 (37%), Gaps = 76/458 (16%) Query: 13 WLRNDLRITDNKALYAACH---NSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69 W+ D R DN AL A A ++ +F P G + RQ F+ L + Sbjct: 25 WMSRDQRAMDNWALLHAQELALERRAPLVVLFTLAPSFL---GATLRQYGFMLRGLAETA 81 Query: 70 KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH 129 + L++ I F + + + L S+ + RV + + + +R ++ + Sbjct: 82 QLLAKMNIPFYLLR----GEPVGQLCSFVERNRVGTVVTD----FDPLRVKRVWREGAAR 133 Query: 130 RVICKSFD-DSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188 F+ DS + P ++ Q Y +T ++ LR L + P+ Sbjct: 134 LCGVPFFEVDSHNIVPCRFVSDK-QEYGAHT----------LRPKLRRLLADFLHEFPPL 182 Query: 189 TPSNIPRFFDYPFQAIDPMFPI-----------------GEQNALHILRKFCKEKVYYYV 231 P P + PFQ +DP + G + A LR F + + Y Sbjct: 183 IPH--PHAWPVPFQPLDPQGILSDLYMDRSVSELSNPLPGTRAAGERLRSFIAQGLEDYG 240 Query: 232 EQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELI-WREF 290 +R+ P G S+LSP+L G L+P++ E L P S AF L+ELI RE Sbjct: 241 LRRNDPCCDGQSELSPWLHFGQLAPQRV---ALETVRTLSGSPSSEAF--LDELIVRREL 295 Query: 291 YRHLMAFYPSVCMGKPFIPWTEKI--EWNKDS----HLLQAWKQGYTGFPIIDAAMRQLN 344 + + + F W K E D + + ++ T P+ +AA R L Sbjct: 296 SDNFCLHNQAYDRLEGFPAWALKTLGEHRHDRREYLYTQEQFQDAETHDPLWNAAQRSLL 355 Query: 345 TIGWMHNRLRMITASFLV-------KDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAAS 397 G MH LRM A ++ + L V R+ + Y LDG + G W+ Sbjct: 356 LGGKMHGYLRMYWAKKILEWSASPEEALAVAIRLNDRYS----LDGRDPNGYAGIAWSMG 411 Query: 398 TGNDSV----PYF---RIFNPTIQGKRFDPQGTFIRHW 428 +D P F R N ++FD +IR W Sbjct: 412 GVHDRAWGERPVFGKIRYMNDRGCRRKFDVD-AYIRRW 448 >gi|116074855|ref|ZP_01472116.1| photolyase protein family [Synechococcus sp. RS9916] gi|116068077|gb|EAU73830.1| photolyase protein family [Synechococcus sp. RS9916] Length = 495 Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust. Identities = 56/205 (27%), Positives = 86/205 (41%), Gaps = 33/205 (16%) Query: 205 DPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPA----IQGTSQLSPYLSIGVLSPRQCW 260 D ++PI Q A L +F +E+ ++ + D + + L+P L+IG+L+P Q Sbjct: 221 DCLYPIDHQGAQDWLDRFLEERFEHFGDYEDAISRHHRVMWHGVLTPMLNIGLLTPEQVL 280 Query: 261 NRLKEEFVDLLIKPKSGAFSWLNELI-WREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKD 319 R E I P + ++ ++I WREF + + F W + Sbjct: 281 RRALEAGESRSI-PLNSLEGFVRQIIGWREFMASMYQRHGRQMRTTNF--------WGFN 331 Query: 320 SHLL-QAWKQGYTGFPIIDAAMRQLNTIGWMHN--RLRMITASFLV------------KD 364 + L +A+ G TG P ID A+ GW H+ RL +I L+ D Sbjct: 332 NQPLPEAFYTGTTGLPPIDDAIHHALETGWCHHIERLMLIGNVMLLCRFHPDRVYQWFMD 391 Query: 365 LLV---DW-RIGEEYFMSQLLDGDL 385 L V DW + Y MSQ DG L Sbjct: 392 LFVDAYDWVMVPNVYGMSQFADGGL 416 >gi|227505176|ref|ZP_03935225.1| possible deoxyribodipyrimidine photolyase [Corynebacterium striatum ATCC 6940] gi|227198225|gb|EEI78273.1| possible deoxyribodipyrimidine photolyase [Corynebacterium striatum ATCC 6940] Length = 178 Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust. Identities = 47/187 (25%), Positives = 83/187 (44%), Gaps = 18/187 (9%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 L W+R+DLR+ DN AL A S +VIA + P + + + + SL ++ Sbjct: 4 LYWIRDDLRLHDNPALTWAA--SRGEVIACVLDEPAYPGSRPLGSATAWWRERSLSRLAA 61 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYE---INEVRRDKLLEKRL 127 +L+ + D+ L ++ +V+ + +NR+Y I+ +D LL + L Sbjct: 62 NLASYNVPLYRLN----GDARSVLPAFAASHKVSAVCWNRRYHLSTIDATAKDTLLAQGL 117 Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187 + SF L+ P HA++ +KVY+ F +A L +L VP + G Sbjct: 118 E----AHSFAAHCLVEP-----HAVKPFKVYSAFARAARAVLQDTMQPALGVPDLHGPGA 168 Query: 188 VTPSNIP 194 + +P Sbjct: 169 IAWEELP 175 >gi|262198146|ref|YP_003269355.1| DNA photolyase FAD-binding protein [Haliangium ochraceum DSM 14365] gi|262081493|gb|ACY17462.1| DNA photolyase FAD-binding protein [Haliangium ochraceum DSM 14365] Length = 496 Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust. Identities = 48/167 (28%), Positives = 79/167 (47%), Gaps = 21/167 (12%) Query: 211 GEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRL--KEEFV 268 G + A L +F + + Y+E R+ PA TSQLSPYL G +S + + R+ ++++ Sbjct: 244 GARAAGETLERFVRAGLPRYLEARNQPADPVTSQLSPYLHFGHISAHEVFRRVMARDQWT 303 Query: 269 DLLIKPKS--------GAFS----WLNELI-WREFYRHLMAFYPSVCMGKPFIPWT---- 311 + P++ GA S +L+ELI WRE ++ A + W Sbjct: 304 PDRMAPRATGSREGFWGASSEVEGFLDELITWREIGYNMAAKRDDYDRYESLPAWAQTTL 363 Query: 312 EKIEWNKDSHL--LQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMI 356 E+ + HL L ++Q T + +AA QL G +HN +RM+ Sbjct: 364 EEHTGDPRPHLYELDEFEQARTHDALWNAAQTQLVREGRIHNYMRML 410 >gi|21758676|dbj|BAC05354.1| unnamed protein product [Homo sapiens] Length = 194 Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust. Identities = 25/68 (36%), Positives = 38/68 (55%), Gaps = 6/68 (8%) Query: 405 YFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIH----APHSW--LDKNDLSLNYPL 458 +F + P G+R DP G +IR +LP L P +YI+ AP + K + +NYP Sbjct: 17 FFHCYCPVGFGRRTDPNGDYIRRYLPVLRGFPAKYIYDLWNAPEGIQKVAKCLIGVNYPK 76 Query: 459 PIVDHKKA 466 P+V+H +A Sbjct: 77 PMVNHAEA 84 >gi|167619332|ref|ZP_02387963.1| deoxyribodipyrimidine photolyase [Burkholderia thailandensis Bt4] Length = 170 Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust. Identities = 38/168 (22%), Positives = 78/168 (46%), Gaps = 7/168 (4%) Query: 1 MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHF 60 M + + + +VW R+DLR++D+ AL A S VI V++ E+ + + Sbjct: 1 MSSFDSTAPAVVWFRDDLRVSDHPAL-ARAAESGRPVIGVYV-FDERAGGRALGGAARWW 58 Query: 61 IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120 ++ SL + +L+ G + D + S+ +++NR+Y + D Sbjct: 59 LHGSLRALDAALAGLGGRLVLLRGDEADTFV----SFVAALGAGAVYWNRRYAFAQRAFD 114 Query: 121 KLLEKRLQ-HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQ 167 ++ L RV ++F+ S+L P I+N + Y+V+ + +A ++ Sbjct: 115 NAVQTALDARRVAVETFNASLLFEPDDIVNGDGRPYQVFGAYWRAALR 162 >gi|167581247|ref|ZP_02374121.1| deoxyribodipyrimidine photolyase [Burkholderia thailandensis TXDOH] Length = 168 Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust. Identities = 38/168 (22%), Positives = 78/168 (46%), Gaps = 7/168 (4%) Query: 1 MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHF 60 M + + + +VW R+DLR++D+ AL A S VI V++ E+ + + Sbjct: 1 MSSFDSTAPAVVWFRDDLRVSDHPAL-ARAAESGRPVIGVYV-FDERAGGRALGGAARWW 58 Query: 61 IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120 ++ SL + +L+ G + D + S+ +++NR+Y + D Sbjct: 59 LHGSLRALDAALAGLGGRLVLLRGDEADTFV----SFVAALGAGAVYWNRRYAFAQRALD 114 Query: 121 KLLEKRLQ-HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQ 167 ++ L RV ++F+ S+L P I+N + Y+V+ + +A ++ Sbjct: 115 NAVQTALDARRVAVETFNASLLFEPDDIVNGDGRPYQVFGAYWRAALR 162 >gi|262277789|ref|ZP_06055582.1| photolyase protein family protein [alpha proteobacterium HIMB114] gi|262224892|gb|EEY75351.1| photolyase protein family protein [alpha proteobacterium HIMB114] Length = 494 Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust. Identities = 42/178 (23%), Positives = 82/178 (46%), Gaps = 20/178 (11%) Query: 213 QNALHILRKFCKEKVYYY------VEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEE 266 ++A +L F K+K+ + V+QRD I S LSP+++ G ++P++ + L + Sbjct: 230 KDAKLVLDNFLKDKLKLFGDYEDAVDQRD--NILFHSALSPFINNGSITPQEILDELTKF 287 Query: 267 FVDLLIKPKSGAFSWLNELI-WREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQA 325 + I G +L ++I WREF R + + F +N + + + Sbjct: 288 EKKVSINSYEG---YLRQVIGWREFMRGIYQNFDDKMQKSNF--------FNHKNKMKNS 336 Query: 326 WKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDG 383 W +G TG +D A++ W H+ R++ S ++ ++ R ++FM +D Sbjct: 337 WYEGTTGLDPLDHAIKNAKDYAWSHHIERLMILSNIMNLCEIEPRQVYKWFMEMFMDS 394 >gi|300781309|ref|ZP_07091163.1| deoxyribodipyrimidine photolyase [Corynebacterium genitalium ATCC 33030] gi|300533016|gb|EFK54077.1| deoxyribodipyrimidine photolyase [Corynebacterium genitalium ATCC 33030] Length = 179 Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust. Identities = 48/186 (25%), Positives = 83/186 (44%), Gaps = 13/186 (6%) Query: 1 MKATTAMSVHLVWLRNDLRITDNKAL-YAACHNSDAKVIAVFIATPEQWRQHGISARQSH 59 M + T + L W R+DLR+TDN AL +AA H V+ +FI E + A + Sbjct: 1 MVSPTPQPLALAWFRDDLRLTDNAALTWAAQHG---HVVGLFIFE-EIDAARPLGAAAAW 56 Query: 60 FIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRR 119 + S+ ++ L+Q+G+ H D E + + T + +NR+Y + Sbjct: 57 WQRESVRKLHADLAQRGV----HLIIEHGDPREIIPRIAAELGATAVTWNRRYHLLFRDV 112 Query: 120 DKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPV 179 D L++ L S +L P ++ + ++V+TP+ KA L+ A P Sbjct: 113 DAELKRTLAQSCEVTSHPGYLLNEPWTVQTGSGTPFRVFTPYGKASQSMLIDAP----PT 168 Query: 180 PAIRLT 185 P++ T Sbjct: 169 PSLSPT 174 >gi|168016051|ref|XP_001760563.1| predicted protein [Physcomitrella patens subsp. patens] gi|162688260|gb|EDQ74638.1| predicted protein [Physcomitrella patens subsp. patens] Length = 528 Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust. Identities = 75/337 (22%), Positives = 137/337 (40%), Gaps = 56/337 (16%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHG-----ISARQSHFIYA 63 +VW RNDLR+ DN+AL +A +S ++ V+ P+ + + +++F+ Sbjct: 179 ASIVWFRNDLRVHDNEALVSANRDS-LSILPVYCFDPKDYGKSSSGFDKTGPYRANFLLE 237 Query: 64 SLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLL 123 + ++ SL ++G S ++ S + L+ +++ E++ ++ + Sbjct: 238 CVANLRSSLRERGSDLIVRVGSPEAVLVDLAKSVGAEA----LYVHQEVTYEELQAEEKV 293 Query: 124 EKRLQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLP--VP 180 LQ + I K F S L + M Y FR+ +QN+ D P + Sbjct: 294 AAALQEKGIETKYFWGSTLFHLEDLPFKLQDMPSNYGGFREK-VQNVAIRDTIEAPQQLK 352 Query: 181 AIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQN--------------ALHILRKFCKE- 225 + G V P +IP ++P + + + AL L+KF E Sbjct: 353 GLPACGNVKPGSIPSI---EVLGLNPATNLRKGSVTVGGDGLLGGEEEALQRLQKFALEA 409 Query: 226 -------KVYYYVEQRDIPAIQG---TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIK-- 273 K + ++ G + ++SP+L++G LSPR+ + LK+ Sbjct: 410 RSQTSNLKASKSQSESSGDSLYGANFSCKISPWLTMGCLSPRRMFEDLKKSASSASAGAM 469 Query: 274 -----PKSGAFS------WLN-ELIWREFYRHLMAFY 298 SGA S WL EL+WR+F+R + Y Sbjct: 470 SALAVKASGAGSDDNGLNWLVFELLWRDFFRFITKKY 506 >gi|307297559|ref|ZP_07577365.1| DNA photolyase FAD-binding [Thermotogales bacterium mesG1.Ag.4.2] gi|306916819|gb|EFN47201.1| DNA photolyase FAD-binding [Thermotogales bacterium mesG1.Ag.4.2] Length = 449 Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust. Identities = 83/364 (22%), Positives = 148/364 (40%), Gaps = 43/364 (11%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISA--RQSHFIYASLLQV 68 L W++ R +N AL A +AK + V +A + S R F++ L V Sbjct: 21 LYWMQASQRTEENHALELA--KQEAKELDVPLAVLFVLNANYPSGNLRSFSFMFDGLRDV 78 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128 + L ++GI F + D + +V+K ++ +R KR+ Sbjct: 79 KSELEEQGIRFVIFKGDPVD----------IVPKVSKRCALVVTDVGYLRHQIDWRKRIA 128 Query: 129 HRVICK--SFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQ-------ADLRSLPV 179 ++ C S + +V++P + + Y T FRK ++++ + +LRS Sbjct: 129 EKLECPFLSVESNVVVPVRTA--SCKEEYSAAT-FRKKVMKHFAEFVNDFEAVELRSRAS 185 Query: 180 PAIRLTGPVTPSNIP-RFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPA 238 A G ++ D + F G++ A L F + + + E+R+ P Sbjct: 186 LA-EFEGATGIEDVDLSDLDQSVSVVSD-FHGGQKEAKRRLEVFLSKNLDRFEEERNDPN 243 Query: 239 IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFY 298 S++SP+L G +SP R+ +D K K+ +++ EL+ R FY Sbjct: 244 SGCLSEMSPFLHFGHISPSYIARRV----IDSCSKGKN---AYIEELVVRRELGVNFVFY 296 Query: 299 PSVCMGKPFIP-WTEKI--EWNKDSHL----LQAWKQGYTGFPIIDAAMRQLNTIGWMHN 351 S +P W +K E KD + L + G T P +AA ++++ G MH Sbjct: 297 NSKYDSFEALPQWAQKTLNEHRKDKRVRSFSLSELESGKTDDPYWNAAQKEMSLTGKMHG 356 Query: 352 RLRM 355 +RM Sbjct: 357 YMRM 360 >gi|120603889|ref|YP_968289.1| deoxyribodipyrimidine photo-lyase [Desulfovibrio vulgaris DP4] gi|120564118|gb|ABM29862.1| Deoxyribodipyrimidine photo-lyase type II [Desulfovibrio vulgaris DP4] Length = 473 Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust. Identities = 89/386 (23%), Positives = 144/386 (37%), Gaps = 59/386 (15%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 L W+ + R DN AL A + A + + R + RQ HF+ + + Sbjct: 24 LYWMHREHRAHDNWALLHAIGEAKAAGAPLAVVWCLSPRFLDAAYRQFHFLLRGMRGTAE 83 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTK---LFYNRQY--EINEVRRDKLLEK 125 +L + GI F Q D+ + ++ VT L R + +++E L E Sbjct: 84 TLREHGIPFFLLQGDPADEVPRFAATHGTGLVVTDFDVLRLKRAWLGQVHEALACPLHEV 143 Query: 126 RLQHRVICKSFDD------------------SVLLPPGSILNHALQMYKVYTPFRKALIQ 167 ++ V C+ D L P S+ A + P A+ Sbjct: 144 DGRNVVPCRMASDKREYAARTLRPKIHRLLPEYLDPFPSLATEASGVAAWKAPVPDAMAA 203 Query: 168 NLVQADLRSLP----VPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFC 223 A L + P VPA LTGP P +P GE+ A L F Sbjct: 204 PDWDALLAAHPADRSVPA--LTGPDAP--VP----------------GEEGARRTLETFL 243 Query: 224 KEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLN 283 +++ Y E+R+ P S LSPYL G+++ ++ R+ S++ Sbjct: 244 TSRIHRY-EKRNDPNADAVSGLSPYLHFGMMAAQRVVQRVTASTA----GSADARASFIE 298 Query: 284 EL-IWREFYRHLMAFYPSVCMGKPFIPWTE-KIEWNKDS---HLLQ--AWKQGYTGFPII 336 EL + RE + P F W + ++ ++D HL A ++ T P+ Sbjct: 299 ELVVRRELADNFCLHTPDYDAVTCFPAWAQGTLDRHRDDPRPHLYDEAALEKARTADPLW 358 Query: 337 DAAMRQLNTIGWMHNRLRMITASFLV 362 +AA QL G +H +RM A L+ Sbjct: 359 NAAQTQLMRCGVIHGYMRMYWAKQLL 384 >gi|167919770|ref|ZP_02506861.1| deoxyribodipyrimidine photolyase [Burkholderia pseudomallei BCC215] Length = 176 Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust. Identities = 41/174 (23%), Positives = 86/174 (49%), Gaps = 9/174 (5%) Query: 1 MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQ-WRQHGISARQSH 59 M ++ +++ +VW R+DLR++D+ AL A S VI V++ R G +AR Sbjct: 1 MSSSISIAPAVVWFRDDLRVSDHPALMRAAE-SGRPVIGVYVFDERAGGRPLGGAARW-- 57 Query: 60 FIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRR 119 +++ SL + +L+ G + D + S+ ++++R+Y + Sbjct: 58 WLHGSLRALGAALAALGGTLALLRGDEHDTIV----SFAAALGAGAVYWSRRYALAARAV 113 Query: 120 DKLLEKRLQHRVIC-KSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQA 172 D ++ L + I ++F+ S+L PG ++N + Y+V++ + +A ++ V A Sbjct: 114 DNAVQTALDAQGIAVETFNASLLFEPGDLVNADGRPYQVFSAYWRAAMRRGVPA 167 >gi|258541537|ref|YP_003186970.1| deoxyribodipyrimidine photolyase [Acetobacter pasteurianus IFO 3283-01] gi|256632615|dbj|BAH98590.1| deoxyribodipyrimidine photolyase [Acetobacter pasteurianus IFO 3283-01] gi|256635672|dbj|BAI01641.1| deoxyribodipyrimidine photolyase [Acetobacter pasteurianus IFO 3283-03] gi|256638727|dbj|BAI04689.1| deoxyribodipyrimidine photolyase [Acetobacter pasteurianus IFO 3283-07] gi|256641781|dbj|BAI07736.1| deoxyribodipyrimidine photolyase [Acetobacter pasteurianus IFO 3283-22] gi|256644836|dbj|BAI10784.1| deoxyribodipyrimidine photolyase [Acetobacter pasteurianus IFO 3283-26] gi|256647891|dbj|BAI13832.1| deoxyribodipyrimidine photolyase [Acetobacter pasteurianus IFO 3283-32] gi|256650944|dbj|BAI16878.1| deoxyribodipyrimidine photolyase [Acetobacter pasteurianus IFO 3283-01-42C] gi|256653935|dbj|BAI19862.1| deoxyribodipyrimidine photolyase [Acetobacter pasteurianus IFO 3283-12] Length = 211 Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust. Identities = 44/157 (28%), Positives = 71/157 (45%), Gaps = 12/157 (7%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 LV LR+D R+ DN AL+AAC V+ ++ + Q R + + A+ Q+ Sbjct: 11 LVLLRDDYRVADNPALHAACATGQ-PVLCAYVQ--DAALQDASGTRIADWAQAACAQLAT 67 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRV--TKLFYNRQYEINEVRRDKLLEKRLQ 128 SL ++G Q L L Q V T +F+NR+Y+ + D + L+ Sbjct: 68 SLHEQG------QTLFMLSGPTRLSVPALAQAVHATDVFWNRRYDAPGIAADTDVHASLK 121 Query: 129 HR-VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKA 164 + V S +L P +I A Q Y+V+T + +A Sbjct: 122 KQGVTVHSCTGRLLFEPWAIRTQAGQPYRVFTAWWRA 158 >gi|225425190|ref|XP_002264876.1| PREDICTED: similar to predicted protein [Vitis vinifera] Length = 467 Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust. Identities = 17/30 (56%), Positives = 23/30 (76%) Query: 414 QGKRFDPQGTFIRHWLPELNNVPTQYIHAP 443 Q +DP+G ++RHWLPEL VPT++IH P Sbjct: 104 QSSNYDPEGEYVRHWLPELARVPTEWIHHP 133 >gi|167816640|ref|ZP_02448320.1| deoxyribodipyrimidine photolyase [Burkholderia pseudomallei 91] Length = 168 Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust. Identities = 41/174 (23%), Positives = 86/174 (49%), Gaps = 9/174 (5%) Query: 1 MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQ-WRQHGISARQSH 59 M ++ +++ +VW R+DLR++D+ AL A S VI V++ R G +AR Sbjct: 1 MSSSISIAPAVVWFRDDLRVSDHPALMRAAE-SGRPVIGVYVFDERAGGRPLGGAARW-- 57 Query: 60 FIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRR 119 +++ SL + +L+ G + D + S+ ++++R+Y + Sbjct: 58 WLHGSLRALGAALAALGGTLALLRGDEHDTIV----SFAAALGAGAVYWSRRYALAARAV 113 Query: 120 DKLLEKRLQHRVIC-KSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQA 172 D ++ L + I ++F+ S+L PG ++N + Y+V++ + +A ++ V A Sbjct: 114 DNAVQTALDAQGIAVETFNASLLFEPGDLVNADGRPYQVFSAYWRAAMRRGVPA 167 >gi|317151798|ref|YP_004119846.1| deoxyribodipyrimidine photolyase [Desulfovibrio aespoeensis Aspo-2] gi|316942049|gb|ADU61100.1| deoxyribodipyrimidine photolyase [Desulfovibrio aespoeensis Aspo-2] Length = 450 Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust. Identities = 43/169 (25%), Positives = 72/169 (42%), Gaps = 14/169 (8%) Query: 203 AIDPMFPI-GEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWN 261 A+ P+ + GE A L +F ++++ Y QR+ P GTS+LS Y G L+P+ Sbjct: 211 AVGPVSLVPGEDAAHDALDRFVADRLHVYAGQRNDPNADGTSRLSAYFHFGQLAPQ---- 266 Query: 262 RLKEEFVDLLIKPKSGAFSWLNEL-IWREFYRHLMAFYP--SVCMGKPFIPWTEKIEWNK 318 + G ++L EL + RE + P G P E Sbjct: 267 --RAALAAAASGRGEGQAAYLEELVVRRELADNFCLHNPQYDSLAGAPAWALKTLGEHRA 324 Query: 319 D----SHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363 D + + ++Q TG + +AA +L G+MH +RM A +++ Sbjct: 325 DPRAHCYTRETFEQARTGSRLWNAAQNELRQTGFMHGYMRMFWAKKILE 373 >gi|116625724|ref|YP_827880.1| deoxyribodipyrimidine photo-lyase type II [Candidatus Solibacter usitatus Ellin6076] gi|116228886|gb|ABJ87595.1| Deoxyribodipyrimidine photo-lyase type II [Candidatus Solibacter usitatus Ellin6076] Length = 456 Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust. Identities = 59/246 (23%), Positives = 97/246 (39%), Gaps = 31/246 (12%) Query: 131 VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIR------- 183 V ++ D S ++P G+I + Y + + I L+ L++ P IR Sbjct: 128 VRLEAVDGSCIVPVGAIPGRSYAAYSI-----RPRIHRLLPKYLKAAPALEIRRRSRERF 182 Query: 184 --LTGPVTPSNIPRF-----FDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDI 236 L V+ NI D+ +A FP G A L++F +E++ Y ++ Sbjct: 183 EDLHTEVSAPNIASLVAECEIDHGVRA-STTFPGGRMAAEAGLQRFLEERLRRYARDKNE 241 Query: 237 PAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMA 296 P++ TS+LSPYL G + + ++E K A +L ELI R H A Sbjct: 242 PSLHATSELSPYLHYGHIGALEVALAVREHAA----AHKLIADEFLEELIVRRELAHNFA 297 Query: 297 FYPSVCMGKPFIP-WTEKI--EWNKDSHLLQAWKQGYTGFPIID----AAMRQLNTIGWM 349 Y +P W K + +D+ + + G D A ++L G + Sbjct: 298 RYAPRLDSLDVLPDWARKTIEDHRRDTRDPVYGRAEFEGAATHDDLWNATQKELVLRGKI 357 Query: 350 HNRLRM 355 H RM Sbjct: 358 HGYYRM 363 >gi|167629931|ref|YP_001680430.1| deoxyribodipyrimidine photolyase [Heliobacterium modesticaldum Ice1] gi|167592671|gb|ABZ84419.1| deoxyribodipyrimidine photolyase [Heliobacterium modesticaldum Ice1] Length = 498 Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust. Identities = 90/436 (20%), Positives = 157/436 (36%), Gaps = 65/436 (14%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 L W++ R N AL A ++ + V + G +AR F+ L V++ Sbjct: 22 LYWMQASQRAEYNHALEYAIGEANKLGLPVLVFFGLTGGVPGANARHYRFLLEGLCDVRE 81 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130 +L ++GI + + + L +R + +R Y +R + + R Sbjct: 82 ALQRRGIAMIIRRIPPVEGVV------ALARRAALVVTDRGY----LRYQRQWREAAAAR 131 Query: 131 VICK--SFDDSVLLPPGSILNHALQMYKVYTPFRKALIQN-LVQADLRSLPVPAIRLTGP 187 + C + V++P + + P K L+ LV + R PA + Sbjct: 132 IDCPFIQVESDVIVPVETASPKEEYGAATFRPKIKRLLDTFLVPLEERDTDCPAPDVEAL 191 Query: 188 VTPS--NIPRFFD--YPFQAIDPMFPI------------GEQNALHILRKFCKEKVYYYV 231 + + P F D P +I + G + A L F +K++ Y Sbjct: 192 LDEALPGEPVFADSATPLSSIVTALSVDASISPARGWRGGSKEAHRRLDDFLGKKLFRYH 251 Query: 232 EQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEF--------------------VDLL 271 E + P++ G S+LSP+L G +SP + + ++ V + Sbjct: 252 EDKKDPSLDGLSELSPFLHFGQISPLEVALKARQAVATDLSLDGTGLSLDGTGPSPVGVG 311 Query: 272 IKPKSGAFSWLNELIWREFYRHLMAFY-PSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGY 330 P G ++L ELI R A+Y P+ W + SH L + + Y Sbjct: 312 PSPNPGLAAFLEELIVRRELAMNFAYYNPAYDQFAALPAWAQA---TLHSHRLDSREFNY 368 Query: 331 TGFPII---------DAAMRQLNTIGWMHNRLRMITASFLVK---DLLVDWRIGEEYFMS 378 T + +AA +L G MH +RM +++ D +RI E + Sbjct: 369 TKAELENACTHDRYWNAAQTELVLRGKMHGYMRMYWGKKILEWTADPERAYRIAVELNDT 428 Query: 379 QLLDGDLASNNGGWQW 394 LDG + G W Sbjct: 429 YALDGRDPNGYTGIAW 444 >gi|262195259|ref|YP_003266468.1| deoxyribodipyrimidine photolyase-related protein [Haliangium ochraceum DSM 14365] gi|262078606|gb|ACY14575.1| deoxyribodipyrimidine photolyase-related protein [Haliangium ochraceum DSM 14365] Length = 519 Score = 47.8 bits (112), Expect = 0.005, Method: Compositional matrix adjust. Identities = 47/196 (23%), Positives = 84/196 (42%), Gaps = 16/196 (8%) Query: 195 RFFDYPFQAIDPM--FPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGT----SQLSPY 248 RF D+P + + P + AL LR F E++ + D + +G S LSP Sbjct: 220 RFADHPGELSEAGWWLPSTRRQALAWLRGFLDERLERFGAYEDALSTRGPVLFHSVLSPL 279 Query: 249 LSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELI-WREFYRHLMAFYPSVCMGKPF 307 L++G+++P + R D + P + +L ++I WREF R V G Sbjct: 280 LNLGLITPDEVVERTLAHAEDHRV-PLNSLEGFLRQIIGWREFVR-------GVYRGHSE 331 Query: 308 IPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLV 367 T W + W TG +D A+ ++ +GW H+ R++ L+ + Sbjct: 332 QQETANA-WGHHRRMKPCWWDASTGLRPLDDAIAKVLRMGWAHHIERLMVLCNLMNLCEI 390 Query: 368 DWRIGEEYFMSQLLDG 383 + R ++F++ +D Sbjct: 391 EPRQVHDWFLAMFVDA 406 >gi|78355226|ref|YP_386675.1| deoxyribodipyrimidine photo-lyase type II [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] gi|78217631|gb|ABB36980.1| Deoxyribodipyrimidine photo-lyase type II [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] Length = 487 Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust. Identities = 43/164 (26%), Positives = 75/164 (45%), Gaps = 8/164 (4%) Query: 208 FPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSP-RQCWNRLKEE 266 P GE AL L F + +++ Y +R+ P + S LSPYL G+LS R ++ + Sbjct: 223 LPPGENAALAELTAFIRVRMHRYAAERNNPLMPVLSHLSPYLHFGMLSAQRAVLEVMQAQ 282 Query: 267 FVDLLIKPKSGAFSWLNEL-IWREFYRHLMAFYPSVCMGKPFIPWTEKI----EWNKDSH 321 GA +++ EL + RE + + PS + F W K ++ + Sbjct: 283 GTAAGGTYGEGAAAFVEELVVRRELADNFCWYEPSYDSVEAFPDWALKTLDRHRADRRPY 342 Query: 322 LL--QAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363 L Q ++ T P+ +AA +++ G MH +RM A +++ Sbjct: 343 LYDEQQLEKARTHDPLWNAAQQEMVLTGKMHGYMRMYWAKKILE 386 >gi|145219390|ref|YP_001130099.1| deoxyribodipyrimidine photo-lyase type II [Prosthecochloris vibrioformis DSM 265] gi|145205554|gb|ABP36597.1| Deoxyribodipyrimidine photo-lyase type II [Chlorobium phaeovibrioides DSM 265] Length = 452 Score = 47.4 bits (111), Expect = 0.006, Method: Compositional matrix adjust. Identities = 70/291 (24%), Positives = 114/291 (39%), Gaps = 31/291 (10%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 + W+ D R+ N+AL + + A + + G + RQ HF+ L +++ Sbjct: 21 IYWMSRDQRVQHNRALLFSQMKAKALGQPLRVVFTLASSFIGATYRQYHFMLEGLREIEL 80 Query: 71 SLSQKGIVFQYHQCS-NFDDSIEWLDSY-------CLQQRVTKLFYNRQYEINEVRRDKL 122 L + I F QCS + L+ Y C+ + L +RQ++ K Sbjct: 81 LLGELNIGFVLLQCSPQSGGPGKELEGYAGSSGAGCVVTDYSPLRISRQWKQQAAASLK- 139 Query: 123 LEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAI 182 V D ++P + + + P L+ +Q L++ V A+ Sbjct: 140 --------VPLYEVDAHNIVPCHAASGKQEYAARTFRPKINRLLGEFLQP-LQA--VEAM 188 Query: 183 RLTGPVTPSNIPRFF-----DYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIP 237 + N F D + ID + P GE+ A LR+F EK+ Y E R+ P Sbjct: 189 PHRAELQKVNWREVFANLSVDRTVEPIDWLKP-GERAASEHLRRFISEKLPRYSELRNDP 247 Query: 238 AIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWR 288 +GTS LS YL G LS Q ++ P+ ++L ELI R Sbjct: 248 TAEGTSLLSAYLHFGQLSAAQVALEVQSSGA-----PEESKAAFLEELIVR 293 >gi|149175245|ref|ZP_01853867.1| deoxyribodipyrimidine photolyase [Planctomyces maris DSM 8797] gi|148845854|gb|EDL60195.1| deoxyribodipyrimidine photolyase [Planctomyces maris DSM 8797] Length = 497 Score = 47.4 bits (111), Expect = 0.006, Method: Compositional matrix adjust. Identities = 70/280 (25%), Positives = 111/280 (39%), Gaps = 68/280 (24%) Query: 131 VICKSFDDSVLLPPGSILNHALQMYKVYTPFR----KALIQNLVQADLRSLPVPAIRLTG 186 V ++ D + LLP L A Q+Y FR KAL +L Q P I Sbjct: 140 VRLEAIDSNGLLP----LRAASQIYPTAYAFRRFLHKALPDHLDQ-------TPKI---N 185 Query: 187 PVTPSNIPRFFDYPFQAID--PM--------------------------FPIGEQNALHI 218 P++ ++P F P + ++ PM F G + A Sbjct: 186 PLSHIDLPEFSSLPAKILERWPMASDQLLQATPEVLADLPLDHQVGPADFDGGMKAASKT 245 Query: 219 LRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKE-------EFVDLL 271 L++F + Y E+R++P + TS LSPYL G +S + + R+ + + +D Sbjct: 246 LKQFLNVRFERYAEERNLPEEEVTSGLSPYLHFGHISVHEVFKRVADREDWNAAKVIDQK 305 Query: 272 IKPKSG--------AFSWLNELI-WREFYRHLMAFYPSVCMGKPFIPWT-----EKIEWN 317 K A +L+ELI WRE ++ + W E Sbjct: 306 ATGKRAGWWQMSETAEGFLDELITWRELGYNMCWQRDDYDQYESLPDWARTTLEEHAADK 365 Query: 318 KD-SHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMI 356 +D + L+ ++Q T + +AA QL T G MHN +RM+ Sbjct: 366 RDPCYTLEEFEQARTHDELWNAAQTQLVTEGRMHNYMRML 405 >gi|21226954|ref|NP_632876.1| deoxyribodipyrimidine photolyase [Methanosarcina mazei Go1] gi|20905266|gb|AAM30548.1| Deoxyribodipyrimidine photolyase [Methanosarcina mazei Go1] Length = 464 Score = 47.0 bits (110), Expect = 0.006, Method: Compositional matrix adjust. Identities = 43/155 (27%), Positives = 74/155 (47%), Gaps = 12/155 (7%) Query: 208 FPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEF 267 F GE+ A ++ F +++ Y R+ P S LSPYL G +S + R+ E Sbjct: 230 FEPGEKAAKKVMESFIADRLDSYGALRNDPTKNMLSNLSPYLHFGQISSQ----RVVLEV 285 Query: 268 VDLLIKPKSGAFSWLNE-LIWREFYRHLMAFYPSVCMGKPFIPWT-EKIEWNKD---SHL 322 P S ++L+E LIW+E + + P + F W E + +++ SH+ Sbjct: 286 EKAESNPGSKK-AFLDEILIWKEISDNFCYYNPGYDGFESFPSWAKESLNAHRNDVRSHI 344 Query: 323 --LQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRM 355 L+ ++ G T P+ +A+ +L + G MH +RM Sbjct: 345 YTLEEFEAGKTHDPLWNASQMELLSTGKMHGYMRM 379 >gi|224371018|ref|YP_002605182.1| DNA deoxyribo-dipyrimidine photolyase family protein [Desulfobacterium autotrophicum HRM2] gi|223693735|gb|ACN17018.1| DNA deoxyribo-dipyrimidine photolyase family protein [Desulfobacterium autotrophicum HRM2] Length = 453 Score = 47.0 bits (110), Expect = 0.006, Method: Compositional matrix adjust. Identities = 82/380 (21%), Positives = 143/380 (37%), Gaps = 68/380 (17%) Query: 11 LVWLRNDLRITDNKALYAACHNS---DAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67 L W++ R +N AL A + + D V+ VF T + + R F+ L + Sbjct: 22 LYWMQQAQRAEENHALEYAIYQANQQDKMVVVVFSLTNDS---PDANLRHYTFMLEGLNE 78 Query: 68 VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127 +KSL ++GI + + ++ + ++ + + +R Y +R + K + Sbjct: 79 TRKSLEKRGIRMIFRIGHPVKEVLD------IGRKASMIVCDRGY----LRHQRAWRKAI 128 Query: 128 QHRVICK--SFDDSVLLPPGSILNHA-LQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL 184 + C + V++P + + A Y + + L Q L + L P++ + Sbjct: 129 AEKSGCPVVQVETDVVIPVEQVSDKAEYAAYTIRPKISRQLDQYLTPIEHIELRNPSLEI 188 Query: 185 TGPVTPSNIPRF--------FDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDI 236 + + + R D Q + +F G A F + Y R+ Sbjct: 189 A--LKSTELERIKTVLKDLNVDDSIQPVSHIFRGGTSEAKARFDVFLDQHFSRYAVHRNE 246 Query: 237 PAIQGTSQLSPYLSIGVLSP-------RQCWNRLKEEFVDLLIKPKSGAFSWLNELI-WR 288 P S +SPYL G +SP + C N +E A ++L ELI R Sbjct: 247 PKYLAVSCMSPYLHFGQISPLYLALKIKACKNEAQE-----------AAAAYLEELIVRR 295 Query: 289 EFYRHLMAFYPSV----CMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPII-------- 336 E + + F P C+ P P E KD YT +I Sbjct: 296 ELAANFVYFNPYYDSLGCL--PAWPTKTLAEHEKDVR-----DPVYTKSQLIACRTHDEY 348 Query: 337 -DAAMRQLNTIGWMHNRLRM 355 +AAM+++ G+MHN +RM Sbjct: 349 WNAAMKEMIVTGFMHNYMRM 368 >gi|18874061|dbj|BAB85485.1| cryptochrome [Sarcophaga bullata] Length = 81 Score = 47.0 bits (110), Expect = 0.007, Method: Composition-based stats. Identities = 23/63 (36%), Positives = 36/63 (57%), Gaps = 6/63 (9%) Query: 411 PTIQGKRFDPQGTFIRHWLPELNNVPTQYIHA----PHSWLDKND--LSLNYPLPIVDHK 464 P KR DP G +I+ ++PEL NVP +YIH P + + +D + ++YP ++D Sbjct: 8 PIALAKRLDPMGQYIKQYVPELANVPKEYIHEPWRMPMNIQEDSDCVIGIHYPERLIDLN 67 Query: 465 KAC 467 AC Sbjct: 68 VAC 70 >gi|27262422|gb|AAN87492.1| Deoxyribodipyrimidine photolyase [Heliobacillus mobilis] Length = 257 Score = 47.0 bits (110), Expect = 0.007, Method: Compositional matrix adjust. Identities = 38/152 (25%), Positives = 73/152 (48%), Gaps = 13/152 (8%) Query: 211 GEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDL 270 G A +L +F K+ +Y E+R+ P+++ S LSPYL G +SP R++E + Sbjct: 28 GASAAKGLLDRFIATKLEHYGERRNDPSLEYVSSLSPYLHFGQISPLYMALRVQESNI-- 85 Query: 271 LIKPKSGAFSWLNELIWRE-----FYRHLMAF--YPSVCMGKPFIPWTEKIEWNKDSHLL 323 ++ ++L ELI R F + + + + ++ +T +++ + ++ L Sbjct: 86 ----RASVDAYLEELIVRRELSINFVHYNLRYDEFTALPEWARQTLYTHRVDCREFNYGL 141 Query: 324 QAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRM 355 + G T P +AA +L G +H +RM Sbjct: 142 SELENGLTDDPFFNAAQTELRKRGIIHGYMRM 173 >gi|46578529|ref|YP_009337.1| deoxyribodipyrimidine photolyase [Desulfovibrio vulgaris str. Hildenborough] gi|46447940|gb|AAS94596.1| deoxyribodipyrimidine photolyase, putative [Desulfovibrio vulgaris str. Hildenborough] Length = 474 Score = 47.0 bits (110), Expect = 0.007, Method: Compositional matrix adjust. Identities = 88/386 (22%), Positives = 142/386 (36%), Gaps = 59/386 (15%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 L W+ + R DN AL A + A + + R + RQ HF+ + + Sbjct: 20 LYWMHREHRAHDNWALVHAIGEAKAAGAPLAVVWCLSPRFLDAAYRQFHFLLRGMRGTAE 79 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTK---LFYNRQY--EINEVRRDKLLEK 125 +L + GI F Q D+ + ++ VT L R + ++ E L E Sbjct: 80 TLREHGIPFFLLQGDPADEVPRFAATHGTGLVVTDFDVLRLKRAWLGQVREALACPLHEV 139 Query: 126 RLQHRVICKSFDD------------------SVLLPPGSILNHALQMYKVYTPFRKALIQ 167 ++ V C+ D L P S+ A + P A+ Sbjct: 140 DGRNVVPCRMASDKREYAARTLRPKIHRLLPEYLDPFPSLATEASGVAAWKAPVPDAMAA 199 Query: 168 NLVQADLRSLP----VPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFC 223 A L + P VPA LTGP P +P GE+ A L F Sbjct: 200 PDWDALLAAHPADRSVPA--LTGPDAP--VP----------------GEEGARRTLETFL 239 Query: 224 KEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLN 283 +++ Y E+R+ P S LSPYL G+++ ++ R+ S++ Sbjct: 240 TSRIHRY-EKRNDPNADAVSGLSPYLHFGMMAAQRVVQRVTASTA----GSADARASFIE 294 Query: 284 EL-IWREFYRHLMAFYPSVCMGKPFIPWTE-KIEWNKDS---HLLQ--AWKQGYTGFPII 336 EL + RE + P F W + ++ ++D HL A ++ T P+ Sbjct: 295 ELVVRRELADNFCLHTPDYDAVTCFPAWAQGTLDRHRDDPRPHLYDEAALEKARTADPLW 354 Query: 337 DAAMRQLNTIGWMHNRLRMITASFLV 362 +A QL G +H +RM A L+ Sbjct: 355 NAGQTQLMRCGVIHGYMRMYWAKQLL 380 >gi|311232455|gb|ADP85309.1| DNA photolyase FAD-binding protein [Desulfovibrio vulgaris RCH1] Length = 478 Score = 47.0 bits (110), Expect = 0.008, Method: Compositional matrix adjust. Identities = 88/386 (22%), Positives = 142/386 (36%), Gaps = 59/386 (15%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 L W+ + R DN AL A + A + + R + RQ HF+ + + Sbjct: 24 LYWMHREHRAHDNWALVHAIGEAKAAGAPLAVVWCLSPRFLDAAYRQFHFLLRGMRGTAE 83 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTK---LFYNRQY--EINEVRRDKLLEK 125 +L + GI F Q D+ + ++ VT L R + ++ E L E Sbjct: 84 TLREHGIPFFLLQGDPADEVPRFAATHGTGLVVTDFDVLRLKRAWLGQVREALACPLHEV 143 Query: 126 RLQHRVICKSFDD------------------SVLLPPGSILNHALQMYKVYTPFRKALIQ 167 ++ V C+ D L P S+ A + P A+ Sbjct: 144 DGRNVVPCRMASDKREYAARTLRPKIHRLLPEYLDPFPSLATEASGVAAWKAPVPDAMAA 203 Query: 168 NLVQADLRSLP----VPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFC 223 A L + P VPA LTGP P +P GE+ A L F Sbjct: 204 PDWDALLAAHPADRSVPA--LTGPDAP--VP----------------GEEGARRTLETFL 243 Query: 224 KEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLN 283 +++ Y E+R+ P S LSPYL G+++ ++ R+ S++ Sbjct: 244 TSRIHRY-EKRNDPNADAVSGLSPYLHFGMMAAQRVVQRVTASTA----GSADARASFIE 298 Query: 284 EL-IWREFYRHLMAFYPSVCMGKPFIPWTE-KIEWNKDS---HLLQ--AWKQGYTGFPII 336 EL + RE + P F W + ++ ++D HL A ++ T P+ Sbjct: 299 ELVVRRELADNFCLHTPDYDAVTCFPAWAQGTLDRHRDDPRPHLYDEAALEKARTADPLW 358 Query: 337 DAAMRQLNTIGWMHNRLRMITASFLV 362 +A QL G +H +RM A L+ Sbjct: 359 NAGQTQLMRCGVIHGYMRMYWAKQLL 384 >gi|91762569|ref|ZP_01264534.1| deoxyribodipyrimidine photolyase-related protein [Candidatus Pelagibacter ubique HTCC1002] gi|91718371|gb|EAS85021.1| deoxyribodipyrimidine photolyase-related protein [Candidatus Pelagibacter ubique HTCC1002] Length = 445 Score = 47.0 bits (110), Expect = 0.008, Method: Compositional matrix adjust. Identities = 48/194 (24%), Positives = 84/194 (43%), Gaps = 18/194 (9%) Query: 196 FFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYY------VEQRDIPAIQGTSQLSPYL 249 F D+P D + + +L F KEK + V Q+D I S LSPY+ Sbjct: 162 FKDHPGSTNDFWLATEYADVVELLDFFIKEKSNLFGDYEDAVNQKD--NILFHSALSPYI 219 Query: 250 SIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELI-WREFYRHLMAFYPSVCMGKPFI 308 ++G+++P ++ E I+ S ++ ++I WREF R + Y K F Sbjct: 220 NLGLITPEIIIQKILEFHKKHKIRMNSLE-GYIRQIIGWREFMRGIYQGYSHEMETKNFF 278 Query: 309 PWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVD 368 K++ ++W +G TG +D A++ GW H+ R++ S ++ V Sbjct: 279 KHNRKMK--------KSWYEGTTGLLPLDYAIKNAVNHGWSHHIERLMILSNIMNLCEVK 330 Query: 369 WRIGEEYFMSQLLD 382 ++FM +D Sbjct: 331 PTTVYKWFMEMFVD 344 >gi|167903518|ref|ZP_02490723.1| deoxyribodipyrimidine photolyase [Burkholderia pseudomallei NCTC 13177] Length = 224 Score = 46.6 bits (109), Expect = 0.009, Method: Compositional matrix adjust. Identities = 37/173 (21%), Positives = 84/173 (48%), Gaps = 7/173 (4%) Query: 1 MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHF 60 + ++ +++ +VW R+DLR++D+ AL A S VI V++ E+ + + Sbjct: 49 LSSSISIAPAVVWFRDDLRVSDHPALMRAAE-SGRPVIGVYVFD-ERAGGRPLGGAARWW 106 Query: 61 IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120 ++ SL + +L+ G + D + S+ ++++R+Y + D Sbjct: 107 LHGSLRALGAALAALGGTLALLRGDEHDTIV----SFAAALGAGAVYWSRRYALAARAVD 162 Query: 121 KLLEKRLQHRVIC-KSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQA 172 ++ L + I ++F+ S+L PG ++N + Y+V++ + +A ++ V A Sbjct: 163 NAVQTALDAQGIAVETFNASLLFEPGDLVNADGRPYQVFSAYWRAAMRRGVPA 215 >gi|311029788|ref|ZP_07707878.1| deoxyribodipyrimidine photolyase [Bacillus sp. m3-13] Length = 221 Score = 46.2 bits (108), Expect = 0.011, Method: Compositional matrix adjust. Identities = 61/240 (25%), Positives = 105/240 (43%), Gaps = 40/240 (16%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAK---VIAVFIATPEQWRQHGISARQS---HF 60 M++ ++W R D R+ DN ALY A + + ++ V+ P G + + F Sbjct: 1 MTLSIMWFRRDFRLQDNAALYHAVKETQHRNEPLLLVYHLDP------GFTTNDTPNHRF 54 Query: 61 IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSY--CLQQ--RVTKLFYNRQYEINE 116 +A+L + K ++GI + + W +++ L+ VT L+YN+ Sbjct: 55 FFAALDRFIKRCEKQGIYIHLVEGT-------WQEAFNQILEHFPEVTSLYYNQDEVGAG 107 Query: 117 VRRDKLLEKRLQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTP-FRKALIQN------ 168 +RDK ++K R I S+ D + + +YKV+TP F+K + Q Sbjct: 108 QKRDKEVDKFFIKRGIRVSSYIDYTIHGANEVKKPDNSIYKVFTPYFKKWMAQPKRDPYI 167 Query: 169 LVQADL--RSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEK 226 L + DL ++ A+ G SN+ + D Q I P E+ AL +L F K+K Sbjct: 168 LTKEDLTIENIKNDALYSKGQKVLSNLIKVSD---QDIIPH----EEAALEVLNLFLKKK 220 >gi|297623532|ref|YP_003704966.1| DNA photolyase FAD-binding protein [Truepera radiovictrix DSM 17093] gi|297164712|gb|ADI14423.1| DNA photolyase FAD-binding protein [Truepera radiovictrix DSM 17093] Length = 489 Score = 46.2 bits (108), Expect = 0.011, Method: Compositional matrix adjust. Identities = 45/159 (28%), Positives = 69/159 (43%), Gaps = 21/159 (13%) Query: 208 FPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEF 267 F G + +LR F +E+ Y R+ P S +S YL G +SP F Sbjct: 253 FRGGTREGERVLRAFLRERFGDYAATRNQPQTNNVSHMSKYLHFGQISP---------VF 303 Query: 268 VDLLIKPKSGAFS----WLNELI-WREFYRHLMAFYPSVCMGKPFIPWTEKI--EWNKDS 320 V L ++ ++GA +L ELI RE + + + P W K E D+ Sbjct: 304 VALEVQ-RAGAGKNAEVYLEELIVRRELPMNFVFYEPHYDRYDALPAWARKTLDEHRGDA 362 Query: 321 --HLL--QAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRM 355 HL + + T P +AAM+++ G+MHN +RM Sbjct: 363 REHLYTREQLEAAETHDPYWNAAMKEMLHTGYMHNYMRM 401 >gi|294495094|ref|YP_003541587.1| deoxyribodipyrimidine photo-lyase type II [Methanohalophilus mahii DSM 5219] gi|292666093|gb|ADE35942.1| Deoxyribodipyrimidine photo-lyase type II [Methanohalophilus mahii DSM 5219] Length = 457 Score = 46.2 bits (108), Expect = 0.012, Method: Compositional matrix adjust. Identities = 37/157 (23%), Positives = 69/157 (43%), Gaps = 14/157 (8%) Query: 206 PMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKE 265 P + G A L F ++ Y E+R+ P + S +SPYL G +SP + ++++ Sbjct: 214 PRYKGGIHQAREKLSDFIAHRLGDYDEKRNDPNLDFLSGMSPYLHFGQISPLEIALKVQD 273 Query: 266 EFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIP-WTEKI------EWNK 318 K G+ +++ EL+ R +Y +P W +K ++ + Sbjct: 274 -------AKKGGSTAYMEELVVRRELAMNFVYYDKDYDSLDCLPDWAKKTLAEHRDDFRQ 326 Query: 319 DSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRM 355 + + ++Q T P +AA R++ G MH +RM Sbjct: 327 YIYTQEEFEQARTHDPYWNAAQREMVLTGKMHGYMRM 363 >gi|115379247|ref|ZP_01466362.1| deoxyribodipyrimidine photo-lyase [Stigmatella aurantiaca DW4/3-1] gi|310819481|ref|YP_003951839.1| deoxyribodipyrimidine photo-lyase [Stigmatella aurantiaca DW4/3-1] gi|115363746|gb|EAU62866.1| deoxyribodipyrimidine photo-lyase [Stigmatella aurantiaca DW4/3-1] gi|309392553|gb|ADO70012.1| Deoxyribodipyrimidine photo-lyase [Stigmatella aurantiaca DW4/3-1] Length = 469 Score = 45.8 bits (107), Expect = 0.014, Method: Compositional matrix adjust. Identities = 56/201 (27%), Positives = 80/201 (39%), Gaps = 25/201 (12%) Query: 208 FPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEF 267 F G A +LR F + Y E R P S +S YL G +SP Sbjct: 222 FRGGTSEAKRVLRGFVTRHLPEYQENRPHPETDHVSHMSKYLHFGQISPVVV---ALAAR 278 Query: 268 VDLLIKPKSGAFSWLNELI-WREFYRHLMAFYPSVCMGKPFIPWTEKI-----EWNKDSH 321 ++P+ F L ELI RE ++ + P W K + H Sbjct: 279 EARALRPQRDTF--LEELIVRRELAQNFAEYTPQYDDYTSLPAWARKTLAAHAGDKRPFH 336 Query: 322 LLQA-WKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQL 380 +A +Q T P +AAMR++ G+MHN +RM + K +L R EE + + L Sbjct: 337 YTKAQLEQARTHDPYWNAAMREMRYTGYMHNAMRM----YWGKKILEWGRTPEEAYRTAL 392 Query: 381 -------LDGDLASN--NGGW 392 LDG A++ N GW Sbjct: 393 TLNNTYFLDGRDANSFTNIGW 413 >gi|254456383|ref|ZP_05069812.1| photolyase protein family protein [Candidatus Pelagibacter sp. HTCC7211] gi|207083385|gb|EDZ60811.1| photolyase protein family protein [Candidatus Pelagibacter sp. HTCC7211] Length = 469 Score = 45.8 bits (107), Expect = 0.014, Method: Compositional matrix adjust. Identities = 47/197 (23%), Positives = 84/197 (42%), Gaps = 24/197 (12%) Query: 196 FFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYY------VEQRDIPAIQGTSQLSPYL 249 F D+P + + + +L F KEK + V Q+D I S LSPY+ Sbjct: 186 FKDHPGSTDNFWLATEYDDVVKLLNFFIKEKSNLFGDYEDAVNQKD--NILFHSALSPYI 243 Query: 250 SIGVLSPRQCWNRLKEEFVDLLIKPK---SGAFSWLNELI-WREFYRHLMAFYPSVCMGK 305 ++G+++P ++ +D K K + ++ ++I WREF R + Y Sbjct: 244 NLGLITPELIIQKI----LDFHKKNKIRMNSLEGYIRQVIGWREFMRGIYQGYSEKMETG 299 Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365 F K++ +W G TG P +D A++ GW H+ R++ S ++ Sbjct: 300 NFFKQNRKMK--------NSWYVGTTGLPPLDYAIKNAVNHGWSHHIERLMILSNIMNLC 351 Query: 366 LVDWRIGEEYFMSQLLD 382 + I ++FM +D Sbjct: 352 EIKPTIVYKWFMEMFVD 368 >gi|289740223|gb|ADD18859.1| photolyase [Glossina morsitans morsitans] Length = 510 Score = 45.8 bits (107), Expect = 0.015, Method: Compositional matrix adjust. Identities = 41/159 (25%), Positives = 74/159 (46%), Gaps = 9/159 (5%) Query: 211 GEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDL 270 G +NA H L +FC+ ++ + ++R+ P I S LSP+ + G +S ++C +K + Sbjct: 273 GYKNACHQLLEFCQNRLKLFHDKRNDPNIDALSGLSPWFNFGQISIQRCILEIKT--YEH 330 Query: 271 LIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKI--EWNKDS----HLLQ 324 K AF ++ RE + + + + W+ K E KD + L+ Sbjct: 331 KFKDSVAAFC-EEAIVRRELADNFCFYNQNYDNFQGLQDWSRKTLNEHRKDERSPCYSLE 389 Query: 325 AWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363 ++Q T + ++A QL G MH LRM A +++ Sbjct: 390 EFEQARTHDDLWNSAQLQLMREGKMHGFLRMYWAKKILE 428 >gi|167009786|ref|ZP_02274717.1| deoxyribodipyrimidine photolyase [Francisella tularensis subsp. holarctica FSC200] Length = 133 Score = 45.8 bits (107), Expect = 0.015, Method: Compositional matrix adjust. Identities = 26/81 (32%), Positives = 44/81 (54%), Gaps = 1/81 (1%) Query: 88 DDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ-HRVICKSFDDSVLLPPGS 146 D+ +E + + +T ++NR Y+ + RD +++ LQ H++ SF+ S+L+ P Sbjct: 17 DNPLEIIKKIIKENNITDFYWNRCYDKYSIDRDTQIKQFLQQHKINVNSFNGSLLIEPWQ 76 Query: 147 ILNHALQMYKVYTPFRKALIQ 167 YKVYTPF K LI+ Sbjct: 77 CKKDDGTHYKVYTPFYKELIK 97 >gi|302850180|ref|XP_002956618.1| photolyase [Volvox carteri f. nagariensis] gi|300258145|gb|EFJ42385.1| photolyase [Volvox carteri f. nagariensis] Length = 667 Score = 45.8 bits (107), Expect = 0.016, Method: Compositional matrix adjust. Identities = 45/147 (30%), Positives = 66/147 (44%), Gaps = 19/147 (12%) Query: 223 CKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFV-DLLIKPKSGAFSW 281 C +VY V+ + GTS++SPYL G++SP + R E + SGA + Sbjct: 444 CPIRVYANVQMWSV-QRSGTSRMSPYLHWGMVSPFRSAERGGYEIAREAAASGGSGAGKF 502 Query: 282 LNEL-IWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDS-----------HLLQAWKQG 329 L+EL +WRE + S +P W +D+ LQ + G Sbjct: 503 LDELLVWRELSYSFCFYRYSQLQSLSVLP-----RWAQDTLAAHATDPRVVKTLQQLELG 557 Query: 330 YTGFPIIDAAMRQLNTIGWMHNRLRMI 356 TG P DAA QL++ G +HN +RM Sbjct: 558 ATGDPFWDAAQCQLSSYGELHNNVRMT 584 >gi|220931344|ref|YP_002508252.1| Deoxyribodipyrimidine photo-lyase [Halothermothrix orenii H 168] gi|219992654|gb|ACL69257.1| Deoxyribodipyrimidine photo-lyase [Halothermothrix orenii H 168] Length = 466 Score = 45.8 bits (107), Expect = 0.017, Method: Compositional matrix adjust. Identities = 89/379 (23%), Positives = 143/379 (37%), Gaps = 60/379 (15%) Query: 11 LVWLRNDLRITDNKALYAAC--HNSDAKVIAVFIAT----PEQWRQHGISARQSHFIYAS 64 L W++ R N AL A N K + V+ PE R+H F+ Sbjct: 23 LYWMQASQRTEYNHALEYAIIEANKSNKPLLVYFGIDTSFPEANRRH------YQFMLEG 76 Query: 65 LLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLE 124 L +V+KSL +GI D +++ + L L +R Y ++ ++ Sbjct: 77 LQEVKKSLYNRGIKMIIESVPPDKDILKFAEYASL------LVVDRGY----LKIERTWR 126 Query: 125 KRLQHRVICK--SFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAI 182 + ++ C + +V++P + + + Y YT RK L + L + L L I Sbjct: 127 NNVSQQIDCPLIQVESNVIVPVE--VASSKEEYAAYT-IRKKLYRKLPEF-LHPLHTRTI 182 Query: 183 RLTGPVTPSNIPRFFDYPFQ---------AIDPMFPI------GEQNALHILRKFCKEKV 227 R++ + + D P +D P G AL + F K+ Sbjct: 183 RVSSLDLKLSFINYKDIPLDNVTLCLDRLKVDNTVPEVNLYRGGTTRALALYNDFLHNKI 242 Query: 228 YYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCW----NRLKEEFVDLLIKPKSGAFSWLN 283 Y E R+ P S +SPYL G +SP N K+ +D G + Sbjct: 243 KDYHEYRNDPVKNWISNMSPYLHFGQVSPLHLIIKGNNYCKKHEID------KGFKEFFE 296 Query: 284 EL-IWREFYRHLMAFYPSVCMGKPFIPWTEKI--EWNKD----SHLLQAWKQGYTGFPII 336 EL I RE + + + P K W +K E D S+ LQ + T P Sbjct: 297 ELVIRRELSFNFVYYNPDYDSIKSLPDWAKKTLKEHENDTREFSYSLQELEDAKTHDPYW 356 Query: 337 DAAMRQLNTIGWMHNRLRM 355 +AA ++L G +H +RM Sbjct: 357 NAAQKELLLTGKIHGYMRM 375 >gi|195657177|gb|ACG48056.1| hypothetical protein [Zea mays] Length = 207 Score = 45.4 bits (106), Expect = 0.018, Method: Compositional matrix adjust. Identities = 35/107 (32%), Positives = 50/107 (46%), Gaps = 16/107 (14%) Query: 211 GEQNALHILRKFCKE------KVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLK 264 GE AL L+KF E KV Q I + ++SP+L+ G LSPR + LK Sbjct: 84 GETEALERLKKFAAECSMQPNKVDKSNTQDSIYGANFSCKISPWLATGCLSPRFMYEELK 143 Query: 265 EEFVDLL---IKPKS------GAFSWLN-ELIWREFYRHLMAFYPSV 301 + + PK+ +WL EL+WR+F+R + Y SV Sbjct: 144 KHATKAIPFGSTPKNNDGTSDAGTNWLMFELLWRDFFRFITKKYSSV 190 >gi|327342154|gb|AEA50864.1| cry2-2 [Populus tremula] Length = 177 Score = 45.4 bits (106), Expect = 0.021, Method: Compositional matrix adjust. Identities = 42/159 (26%), Positives = 72/159 (45%), Gaps = 17/159 (10%) Query: 8 SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67 S +VW R DLRI DN AL AA D V VFI P++ Q ++ SL Sbjct: 4 SKTIVWFRRDLRIEDNPALAAAAR--DGCVFPVFIWCPKEEGQFYPGRVSRWWLKQSLAH 61 Query: 68 VQKSLSQKG----IVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYE-INEVRRDKL 122 + +SL G ++ + D IE + + T++ +N Y+ ++ VR + Sbjct: 62 LGQSLKSLGAELVLIKTHSTVVALLDCIETIGA-------TRVVFNHLYDPVSLVRDHNI 114 Query: 123 LEKRLQHRVICKSFDDSVLLPPGSILN---HALQMYKVY 158 EK ++ + +S++ +L P I + +A ++ Y Sbjct: 115 KEKLVELGISVQSYNGDLLYEPWEIYDERGYAFTTFEAY 153 >gi|294102825|ref|YP_003554683.1| deoxyribodipyrimidine photolyase [Aminobacterium colombiense DSM 12261] gi|293617805|gb|ADE57959.1| deoxyribodipyrimidine photolyase [Aminobacterium colombiense DSM 12261] Length = 456 Score = 45.4 bits (106), Expect = 0.021, Method: Compositional matrix adjust. Identities = 98/435 (22%), Positives = 170/435 (39%), Gaps = 67/435 (15%) Query: 13 WLRNDLRITDNKALYAACHNS---DAKVIAVFIATPEQWRQHGISA--RQSHFIYASLLQ 67 W+ D R+ DN AL A + ++ VF TP H +SA R HF+ L + Sbjct: 21 WMNRDQRVEDNWALLEAQKYALLNKKPLLVVFCLTP-----HFLSASYRAYHFMLHGLHE 75 Query: 68 VQKSLSQKGIVF---QYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD---K 121 V++ L I F + + + I+ +D L + L +++ + ++++D Sbjct: 76 VRQGLLGLNIPFILLEQEAPLSLPNLIKKIDVSALFTDFSPLRIKKEW-VEQIKKDIAIP 134 Query: 122 LLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPA 181 E + V C + L+ + +LI++ L A Sbjct: 135 FYEIDAHNIVPCWEASTKKEYSARTFRPRILKKVPDFLTPIPSLIRHPYNETL------A 188 Query: 182 IRLTGPVTPSNIPRFFDYPFQAIDPMF--PIGEQNALHILRKFCKEKVYYYVEQRDIPAI 239 ++ P+ + + YP Q P++ G + L+KF K+K+ Y E R+ P Sbjct: 189 LKTAAPL---EMLTKYHYP-QKTLPLYGGKAGYTAGMECLQKFIKKKLRVYKELRNDPTN 244 Query: 240 QGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKP--------KSGAFSWLNELIWREFY 291 SQLSP+L G ++P++ V ++IK + S+L ELI R Sbjct: 245 NVLSQLSPFLHFGQIAPQR---------VAIVIKKHGENHESIRDSVDSFLEELIVRREL 295 Query: 292 RHLMAFY-PSVCMGKPFIPWTEKI----EWN--KDSHLLQAWKQGYTGFPIIDAAMRQLN 344 FY PS + F W +K W+ K ++ L+ + G T + +A + Sbjct: 296 ADNFCFYTPSYDCFEGFPQWAQKTLDEHRWDPRKFTYTLEELEHGKTHDQLWNACQLDIL 355 Query: 345 TIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQL--------LDGDLASNNGGWQWAA 396 G +H+ LRM A +++W E M +DG + G W+ Sbjct: 356 FHGKLHSWLRMYWAK-----KILEWSKSPEEAMKAAIYLNDCYEIDGRDPNGYAGIAWSI 410 Query: 397 STGNDSV-PYFRIFN 410 +D P +IF Sbjct: 411 GGVHDRAWPERQIFG 425 >gi|301090094|ref|XP_002895279.1| deoxyribodipyrimidine photolyase, putative [Phytophthora infestans T30-4] gi|262100969|gb|EEY59021.1| deoxyribodipyrimidine photolyase, putative [Phytophthora infestans T30-4] Length = 582 Score = 45.1 bits (105), Expect = 0.026, Method: Compositional matrix adjust. Identities = 60/215 (27%), Positives = 92/215 (42%), Gaps = 26/215 (12%) Query: 198 DYPFQAIDPMFPIGEQNALHILRKF-CKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSP 256 D +A+ F GE+ A +KF + + Y +R+ P++ S LS YL G + Sbjct: 282 DRSVKAVGWHFKGGEKAASACAKKFLTADNLVSYATKRNEPSLDAGSDLSLYLRYGHI-- 339 Query: 257 RQCWNR--LKEEFVDLLIKPKSGAFSWLNELI-WREFYRHLMAF----YPSVCMGKPF-- 307 C R L + + + K G S+L ELI RE +L+ + Y S+C + Sbjct: 340 --CVVRVVLAAHKLKGVKRAKEGLASFLEELIVRRELSVNLVVYNQDNYDSMCCLPSYAQ 397 Query: 308 IPWTEKIEWNKDSHLLQAWKQGY-TGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLL 366 I E + +D + + Y TG +AA R+L G MH +RM + K LL Sbjct: 398 ITLQEHADDKRDQLYSREQLENYQTGDRFWNAAQRELVVTGKMHGYMRM----YWGKKLL 453 Query: 367 VDWRIGEEYFMSQL-------LDGDLASNNGGWQW 394 R E+ F + L LD A++ G W Sbjct: 454 EWTRTPEDGFNAALVLNNKYALDAPDANSYAGVAW 488 >gi|321460192|gb|EFX71237.1| DNA photolyase 2 [Daphnia pulex] Length = 523 Score = 45.1 bits (105), Expect = 0.027, Method: Compositional matrix adjust. Identities = 44/165 (26%), Positives = 72/165 (43%), Gaps = 12/165 (7%) Query: 198 DYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPR 257 D +D + P G ++ L L FC+ ++ Y E+R+ P + S LSP+L G +S + Sbjct: 269 DRTVGEVDWITP-GTKSGLQELFNFCQRRLKMYAEKRNDPNLAALSNLSPWLHFGQISAQ 327 Query: 258 QCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG-KPFIPWTEKI-- 314 +C +K K +++ E I R FY + K W ++ Sbjct: 328 RCILEVK----GYKTKHAKSVDAYMEETIIRRELSDNFCFYNTNYDNLKGAANWAQETLE 383 Query: 315 --EWNKDSHLLQA--WKQGYTGFPIIDAAMRQLNTIGWMHNRLRM 355 + +K LL A ++G T + +A+ QL G MH LRM Sbjct: 384 VHKKDKRPALLSAQQLEEGKTHDDLWNASQIQLTRTGKMHGFLRM 428 >gi|158999384|gb|ABW87016.1| cryptochrome [Musca domestica] Length = 72 Score = 45.1 bits (105), Expect = 0.027, Method: Composition-based stats. Identities = 20/55 (36%), Positives = 30/55 (54%), Gaps = 1/55 (1%) Query: 390 GGWQWAASTGNDSVPYFRIFN-PTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAP 443 G W W +S+ + + + P KR DP GT+I+ ++PEL VP +IH P Sbjct: 4 GNWMWVSSSAFERLLDSSLVTCPVALAKRLDPLGTYIKQYVPELAKVPQLFIHEP 58 >gi|304393315|ref|ZP_07375243.1| photolyase family protein [Ahrensia sp. R2A130] gi|303294322|gb|EFL88694.1| photolyase family protein [Ahrensia sp. R2A130] Length = 505 Score = 45.1 bits (105), Expect = 0.030, Method: Compositional matrix adjust. Identities = 40/161 (24%), Positives = 71/161 (44%), Gaps = 17/161 (10%) Query: 208 FPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS-----QLSPYLSIGVLSPRQCWNR 262 FPI + A L F +++ + + D ++G S L+P L++G+L+PRQ N Sbjct: 227 FPIDHEGAAEWLNTFLEQRFHLFGPYEDA-IVKGESWLWHGVLTPMLNVGLLTPRQIVNE 285 Query: 263 LKEEFVDLLIKPKSGAFSWLNELI-WREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSH 321 F D P + ++ ++I WREF + A Y + + W Sbjct: 286 TL-AFADKHDVPINSLEGFIRQIIGWREF---MAATYADLG-----VEMRTTNHWKHTRK 336 Query: 322 LLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLR-MITASFL 361 + ++ G TG ID A+ ++N + H+ R M+ F+ Sbjct: 337 IPHSFYDGTTGIGPIDDAIHRINDTAYAHHIERLMVLGGFM 377 >gi|85858841|ref|YP_461043.1| deoxyribodipyrimidine photolyase [Syntrophus aciditrophicus SB] gi|85721932|gb|ABC76875.1| deoxyribodipyrimidine photolyase [Syntrophus aciditrophicus SB] Length = 460 Score = 44.7 bits (104), Expect = 0.031, Method: Compositional matrix adjust. Identities = 79/374 (21%), Positives = 140/374 (37%), Gaps = 60/374 (16%) Query: 11 LVWLRNDLRITDNKALYAACHNSDA--KVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 L W++ R T N AL A ++A + + VF + + + + R F+ L Sbjct: 22 LYWMQASQRETCNHALEYAIRKANALCQPVVVFFGIVDDFPE--ANERHYFFMLEGLCDA 79 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128 +++L ++GI CS + + +R + V R L ++ Sbjct: 80 KRTLEKRGIQLVIQHCS---------------PELGVVMMSRDASLVVVDRGYLRIQKAW 124 Query: 129 HRVICKSFDDSVLLPPGSIL-----NHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIR 183 V S D ++ ++ + + Y T RK + Q L Q + ++ Sbjct: 125 RNVAAASMDCPLIQVESDVVVPIEETSSKEEYSAAT-IRKKIHQKLNQY------LISLE 177 Query: 184 LTGPVTPSNIPRFFDYPFQAID---------------PMFPIGEQNALHILRKFCKEKVY 228 T P+ S F +P ++ F G + L F +K+ Sbjct: 178 ETKPMADSLSLDFESFPIDDVERAILRLDIDRSVKCVSFFRGGFEEGRKHLDVFIDQKLE 237 Query: 229 YYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWR 288 +Y E R+ P + S +SPYL G +SP R +L ++ + ++L ELI R Sbjct: 238 HYAEHRNDPTLDCLSLMSPYLHFGQISPLYIALR-------ILNSGRTSSEAYLEELIVR 290 Query: 289 EFYRHLMAFYPSVCMGKPFIP-WTEKI--EWNKDS----HLLQAWKQGYTGFPIIDAAMR 341 FY + +P W +K KD + + + G T P +AA + Sbjct: 291 RELGINFVFYNTHYDTFECLPGWAKKSLRTHEKDQRPYHYSRKELEDGKTHDPYWNAAQK 350 Query: 342 QLNTIGWMHNRLRM 355 ++ G MH +RM Sbjct: 351 EMVLKGKMHGYMRM 364 >gi|256426122|ref|YP_003126775.1| deoxyribodipyrimidine photolyase-related protein [Chitinophaga pinensis DSM 2588] gi|256041030|gb|ACU64574.1| deoxyribodipyrimidine photolyase-related protein [Chitinophaga pinensis DSM 2588] Length = 492 Score = 44.7 bits (104), Expect = 0.034, Method: Compositional matrix adjust. Identities = 53/213 (24%), Positives = 85/213 (39%), Gaps = 32/213 (15%) Query: 200 PFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRD----IPAIQGTSQLSPYLSIGVLS 255 P A +P+ Q A H L +F +E+ + D +I S L+P L+IG+L Sbjct: 214 PGDATTCRYPVTHQQAEHWLEQFLEERFRKFGIYEDAIVQTESILYHSMLTPALNIGLLL 273 Query: 256 PRQCWNRLKEEFVDLLIKPKSGAFSWLNELI-WREFYRHLMAFYPSVCMGKPFIPWTEKI 314 P Q + + P + ++ +++ WREF R L S F Sbjct: 274 PMQILEKAIA-MAPVHKVPLNSLEGFIRQILGWREFIRILYRREGSKQRTTNF------- 325 Query: 315 EWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLR-MITASFLV-----KDLLVD 368 W+ + + ++ G TG P ID + +L G+ H+ R MI +F++ D + Sbjct: 326 -WDHERPMPDSFYTGNTGIPPIDQTIHKLLRHGYTHHIERLMILGNFMLLCELHPDAVYQ 384 Query: 369 W------------RIGEEYFMSQLLDGDLASNN 389 W + Y MSQ DG L S Sbjct: 385 WFMELYIDAYDWVMVPNVYGMSQFADGGLMSTK 417 >gi|170744406|ref|YP_001773061.1| deoxyribodipyrimidine photo-lyase [Methylobacterium sp. 4-46] gi|168198680|gb|ACA20627.1| Deoxyribodipyrimidine photo-lyase [Methylobacterium sp. 4-46] Length = 465 Score = 44.7 bits (104), Expect = 0.036, Method: Compositional matrix adjust. Identities = 46/164 (28%), Positives = 72/164 (43%), Gaps = 14/164 (8%) Query: 202 QAIDPM--FPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQC 259 +A+ P+ F GE A+ L + Y R+ P S +SPYL G +SP Sbjct: 218 RAVRPVRRFRGGEDEAMARLDAYLAGPFAQYGTVRNRPEAGAASHMSPYLHFGQISPVAI 277 Query: 260 WNRLKEEFVDLLIKPKSGAFSWLNELI-WREFYRHLMAFYPSVCMGKPFIP-WTEKI--E 315 +++ P+ A S+L ELI RE + + + P + +P W + E Sbjct: 278 ALKVRAAAAG---GPEDKA-SYLEELIVRRELAMNHVHYQPGYDRYESAVPDWARRALAE 333 Query: 316 WNKDS----HLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRM 355 D + A ++G T +AAMR++ G+MHN LRM Sbjct: 334 HAGDRRDPLYDEAALEEGRTHDRHWNAAMREMRETGYMHNHLRM 377 >gi|87303557|ref|ZP_01086340.1| deoxyribodipyrimidine photolyase-related protein [Synechococcus sp. WH 5701] gi|87281970|gb|EAQ73933.1| deoxyribodipyrimidine photolyase-related protein [Synechococcus sp. WH 5701] Length = 504 Score = 44.7 bits (104), Expect = 0.039, Method: Compositional matrix adjust. Identities = 34/112 (30%), Positives = 52/112 (46%), Gaps = 13/112 (11%) Query: 274 PKSGAFSWLNELI-WREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTG 332 P + +L ++I WREF R + + + F WN L W G TG Sbjct: 299 PIASLEGFLRQVIGWREFVRGIDRVHGETQASRNF--------WNHRRRLAPCWTDGSTG 350 Query: 333 FPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGE--EYFMSQLLD 382 P +DAA+ +LN G+ H+ R++ S L+ LL + E +FM + LD Sbjct: 351 LPPLDAAIERLNRTGYNHHIERLMVISNLM--LLCEIHPAEVQRWFMERYLD 400 >gi|218514415|ref|ZP_03511255.1| deoxyribodipyrimidine photo-lyase protein [Rhizobium etli 8C-3] Length = 105 Score = 44.3 bits (103), Expect = 0.040, Method: Composition-based stats. Identities = 25/65 (38%), Positives = 39/65 (60%), Gaps = 1/65 (1%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 ++W R DLR+ DNKAL AA H S +I+++I PE + A QS +++ SL + Sbjct: 10 ILWFRKDLRLDDNKALNAA-HFSGRPIISLYIREPEAAGTGPLGAAQSWWLHHSLEALDG 68 Query: 71 SLSQK 75 SL ++ Sbjct: 69 SLRKR 73 >gi|313672005|ref|YP_004050116.1| deoxyribodipyrimidine photo-lyase [Calditerrivibrio nitroreducens DSM 19672] gi|312938761|gb|ADR17953.1| Deoxyribodipyrimidine photo-lyase [Calditerrivibrio nitroreducens DSM 19672] Length = 444 Score = 44.3 bits (103), Expect = 0.042, Method: Compositional matrix adjust. Identities = 42/155 (27%), Positives = 70/155 (45%), Gaps = 11/155 (7%) Query: 208 FPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEF 267 F GE A +LR F EK ++ E+R P++ S LS YL G +SP ++ +E Sbjct: 211 FIGGESKADKLLRDFLNEKYLFFAEKRGDPSLDVESNLSFYLHFGFISPI----KILKEA 266 Query: 268 VDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIP-WTEK--IEWNKDS---- 320 + + PK+ + ++ RE + + ++ F+P W K IE D Sbjct: 267 IKIDTDPKNYETLFEQLVVRRELAHNFTYYCDNISDLFSFLPNWAVKTVIEHKDDIRKYL 326 Query: 321 HLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRM 355 + L+ + T +AA +L G +HN +RM Sbjct: 327 YKLEDLENFKTHDKFWNAAQYELIHKGKIHNYMRM 361 >gi|283851297|ref|ZP_06368579.1| DNA photolyase FAD-binding [Desulfovibrio sp. FW1012B] gi|283573247|gb|EFC21225.1| DNA photolyase FAD-binding [Desulfovibrio sp. FW1012B] Length = 462 Score = 44.3 bits (103), Expect = 0.045, Method: Compositional matrix adjust. Identities = 62/256 (24%), Positives = 101/256 (39%), Gaps = 47/256 (18%) Query: 200 PFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQC 259 P I P G + A L F +++ Y ++R+ P TS LSP+ G L+P+ Sbjct: 214 PVAGITP----GPEAAREALAAFLADRLPAYADRRNDPNAGATSTLSPWFHHGHLAPQ-- 267 Query: 260 WNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP-------FIPWTE 312 R + ++ + +GA ++L EL+ R R L Y C+ +P W + Sbjct: 268 --RAALDALEAKKRAPAGAEAFLEELVVR---RELADNY---CLHEPAYDTLAALPAWAQ 319 Query: 313 KIEWNKDS------HLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLL 366 K + + + ++ T + +AA RQL G +H +RM + K +L Sbjct: 320 KTLGAHAADPRPYRYTAREFETAATHSALWNAAERQLVRQGRLHGYMRM----YWAKKIL 375 Query: 367 VDWRIGEEYFMSQ--------LLDGDLASNNGGWQWAASTGND----SVPYF---RIFNP 411 +W E ++ LDG S G W+ +D S P F R N Sbjct: 376 -EWSATPEAALATALSLNDRYALDGSDPSGVAGVLWSVGGLHDRPWASRPVFGQIRYMNA 434 Query: 412 TIQGKRFDPQGTFIRH 427 ++FD RH Sbjct: 435 RGCRRKFDVDAYIARH 450 >gi|39997921|ref|NP_953872.1| deoxyribodipyrimidine photolyase [Geobacter sulfurreducens PCA] gi|39984866|gb|AAR36222.1| deoxyribodipyrimidine photolyase, putative [Geobacter sulfurreducens PCA] gi|298506859|gb|ADI85582.1| deoxyribodipyrimidine photolyase, putative [Geobacter sulfurreducens KN400] Length = 461 Score = 44.3 bits (103), Expect = 0.046, Method: Compositional matrix adjust. Identities = 87/373 (23%), Positives = 147/373 (39%), Gaps = 40/373 (10%) Query: 11 LVWLRNDLRITDNKALYAA---CHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67 + W+ D R+ DN AL A A + +F P R G +ARQ F+ L Q Sbjct: 21 IYWMSRDQRVADNWALIHAQKLALARSAPLGVLFCLAP---RFLGATARQYRFMLKGLEQ 77 Query: 68 VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127 V+ +L++ I F D + ++ + RV+ L + ++ V+R+ + Sbjct: 78 VRAALNRLDIPFFLVT----GDPKGAVAAFTRRHRVSYLVTD--FDPLRVKREWKRQVAG 131 Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187 + + D ++P + Q + YT K I L+ + P P R P Sbjct: 132 EISIPFDEVDAHNIVP--CWITSQRQEWGAYTIRPK--IHRLLPDFMEPFP-PLQRHPFP 186 Query: 188 ---VTPSNIPRFFDYPFQAIDPMFP------IGEQNALHILRKFCKEKVYYYVEQRDIPA 238 PS+ + +D P GE+ A L +F ++ + Y +R+ PA Sbjct: 187 WQGALPSDAEWRETFTGMTLDESVPEVSWLASGEEAAQAALARFLEDGLAGYATRRNNPA 246 Query: 239 IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELI-WREFYRHLMAF 297 + G S LSP+L G LS + + P ++L ELI RE + + Sbjct: 247 VMGQSGLSPWLHFGQLS-----AQRVAQAAFAAAAPIESRDAFLEELIVRRELADNFCYY 301 Query: 298 YPSVCMGKPFIPWTEKIEWNKDSHLLQ-------AWKQGYTGFPIIDAAMRQLNTIGWMH 350 + F W ++ N+ H + +QG T + +AA ++ G MH Sbjct: 302 NDAYDRFDGFPEWAQRT-LNRHRHDPRPQCYEHDVLEQGQTHDSLWNAAQLEMVRWGRMH 360 Query: 351 NRLRMITASFLVK 363 LRM A L++ Sbjct: 361 GYLRMYWAKKLLE 373 >gi|301057335|ref|ZP_07198453.1| FAD binding domain of DNA photolyase [delta proteobacterium NaphS2] gi|300448565|gb|EFK12212.1| FAD binding domain of DNA photolyase [delta proteobacterium NaphS2] Length = 499 Score = 44.3 bits (103), Expect = 0.047, Method: Compositional matrix adjust. Identities = 55/183 (30%), Positives = 81/183 (44%), Gaps = 26/183 (14%) Query: 199 YPFQAIDPMFPIGEQNA---LHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLS 255 YP I P P GE A L +L++F + +Y + R+ P TS LSPYL G +S Sbjct: 227 YPIDHIIPPVP-GEGGAVRGLRMLKRFIMSGLPHYADGRNQPDQPVTSGLSPYLHFGHVS 285 Query: 256 PRQC---------WNRLK--EEFVDLLIKP----KSGAFSWLNELI-WREFY----RHLM 295 P Q W R K E+ VD A ++L++LI WRE RH Sbjct: 286 PHQVFHEIARNQGWQRQKSAEKKVDGRRAGWWGMDENAEAFLDQLITWRELGFNMCRHDE 345 Query: 296 AFYPSVCMGKPFIPWTEKIEWNKDSHL--LQAWKQGYTGFPIIDAAMRQLNTIGWMHNRL 353 + + + E E +K ++ L+ ++ T + +AA QL G +HN L Sbjct: 346 KYDRYASLPQWVRDTLEAHEKDKRPYVYALEDFENAQTHDSLWNAAQNQLVREGRIHNYL 405 Query: 354 RMI 356 RM+ Sbjct: 406 RML 408 >gi|330814352|ref|YP_004358591.1| protein-like deoxyribodipyrimidine photolyase [Candidatus Pelagibacter sp. IMCC9063] gi|327487447|gb|AEA81852.1| protein-like deoxyribodipyrimidine photolyase [Candidatus Pelagibacter sp. IMCC9063] Length = 469 Score = 44.3 bits (103), Expect = 0.048, Method: Compositional matrix adjust. Identities = 36/159 (22%), Positives = 69/159 (43%), Gaps = 14/159 (8%) Query: 209 PIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGT----SQLSPYLSIGVLSPRQCWNRLK 264 P ++A+ + F KEK + + D ++ S LSP +++G+++P R Sbjct: 199 PTTRKDAIKLYLNFLKEKFALFGDYEDSMTVKSHTVFHSMLSPIINLGLITPATLI-RET 257 Query: 265 EEFVDLLIKPKSGAFSWLNELI-WREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLL 323 +F P + ++ ++I WREF R + Y + F +N L Sbjct: 258 LDFAKANKIPLNSLEGYVRQIIGWREFMRGIYQNYEKRLLNTNF--------FNHQRKLS 309 Query: 324 QAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLV 362 ++W G TG +D A++ G+ H+ R++ L+ Sbjct: 310 KSWYDGTTGIVPLDHAIKNCLQFGYTHHIERLMVVCNLM 348 >gi|291286943|ref|YP_003503759.1| deoxyribodipyrimidine photolyase [Denitrovibrio acetiphilus DSM 12809] gi|290884103|gb|ADD67803.1| deoxyribodipyrimidine photolyase [Denitrovibrio acetiphilus DSM 12809] Length = 446 Score = 44.3 bits (103), Expect = 0.048, Method: Compositional matrix adjust. Identities = 90/377 (23%), Positives = 148/377 (39%), Gaps = 54/377 (14%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAK---VIAVFIATPEQWRQHGISARQSHF--IYASL 65 + W+ D R+ DN AL A ++++ + VF P+ SAR HF + L Sbjct: 22 IYWMNRDQRVRDNWALIKAMELAESRQSPMAVVFCLIPDY-----PSARNQHFRFMMEGL 76 Query: 66 LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTK---LFYNRQY--EINEVRRD 120 ++ L I F + D+ +++ VT L +NR+ E+ EV Sbjct: 77 CEIDLELEYLKIPFFMISGNPVDELSKFIRQVGAGAVVTDFSPLKFNRKMKLELAEVINV 136 Query: 121 KLLEKRLQHRVICKSFDDSVLLPPGSI---LNHALQMYKVYTPFRKALIQNLVQADLRSL 177 L+E + V C+ +I +N L + V P L Q + + Sbjct: 137 PLIEVDAHNIVPCRIASHKEEFAARTIRPKINGLLSQFLVEFP---KLKQQRYKWKGHTA 193 Query: 178 PVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIP 237 + R+ + IP F +P G + A L F + Y +R+ P Sbjct: 194 HIDWERV---INSFGIPNNF----------YPAGIRAADEALHNFVTGSLNGYNIKRNDP 240 Query: 238 AIQGTSQLSPYLSIGVLSPRQCWNRLKEEF-VDLLIKPKSGAFSWLNELIWR----EFYR 292 I S LSPYL G +S ++C E F D I+ ++ EL+ R E Y Sbjct: 241 TIDHQSNLSPYLHFGNISAQRCALDAGEAFWADEDIR------AFKEELVVRRELAENYC 294 Query: 293 HLMAFYPSVCMGKPFIPWTEK-IEWNKDS-----HLLQAWKQGYTGFPIIDAAMRQLNTI 346 Y SV W +K IE ++D + ++Q T P+ +AA +++ Sbjct: 295 FYNDHYDSVEGAH---SWAKKTIEEHRDDSREYIYGYDEFEQAKTHDPLWNAAQKEMAIK 351 Query: 347 GWMHNRLRMITASFLVK 363 G MH +RM A +++ Sbjct: 352 GKMHGYMRMYWAKKMLE 368 >gi|51859619|gb|AAU11091.1| class-II photolyase [Antonospora locustae] Length = 528 Score = 44.3 bits (103), Expect = 0.048, Method: Compositional matrix adjust. Identities = 95/453 (20%), Positives = 173/453 (38%), Gaps = 63/453 (13%) Query: 13 WLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQKSL 72 W+ D R+ DN AL A + + +FI R + RQ F+ A L +V+ Sbjct: 100 WMSRDQRVQDNWALLCAQGIAVRHGLPLFICFCLVPRFLDATTRQFRFMLAGLREVETEA 159 Query: 73 SQKGIVFQYHQCSNFDDSIEWLDSY---CLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH 129 Q GI F + S + +++ + C+ L R++ LL +RL+ Sbjct: 160 LQLGIAFHVLKGSAPEALPRFVEHHKIGCVVADFNPLRVVREW-------CSLLCERLRG 212 Query: 130 -RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIR-LTGP 187 RV D ++P + + + P I + A L P A+ ++GP Sbjct: 213 MRVSVVQVDAHNIVPAWVVSDKQEAGARTMRP----KIHRHLPAFLTEYPPVAVHPVSGP 268 Query: 188 VTPSNIPRFFDYPFQAIDPMFPI-----GEQNALHILRKFCKEKVYYYVEQRDIPAIQGT 242 + + +A + G + A +L FC E+++ Y + R+ PA G Sbjct: 269 ASVRVDWAALEASVRADTGVGDCSWIRSGTRAAFEVLDVFCSERLHAYADVRNDPARDGL 328 Query: 243 SQLSPYLSIGVLSPRQC------WNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMA 296 S +SPY G ++ ++ + R VD+ ++ ++ RE + Sbjct: 329 SNMSPYFHFGQIAVQRAVLVVCSFRRTHGVSVDVFVE---------EAVVRRELADNFCL 379 Query: 297 F---YPSVCMGKPFIPWT---EKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMH 350 Y SV + T + + + ++ L+ + T + +AA Q+ G MH Sbjct: 380 HNRNYDSVEGASSWARGTLDAHRADRREHTYTLEQLEHAQTHDELWNAAQTQMTRDGKMH 439 Query: 351 NRLRMITASFLVKDLLVDWRIGEEYFMSQL--------LDGDLASNNGGWQWAASTGNDS 402 +RM + K +L +W + E + LDG + G W+ +D Sbjct: 440 GFMRM----YWAKKIL-EWSVSPEEALRHAIYLNDRYELDGRDPNGYVGCMWSICGVHDR 494 Query: 403 V----PYF---RIFNPTIQGKRFDPQGTFIRHW 428 P F R + + ++FD G +IR + Sbjct: 495 AWAERPVFGKVRYMSYSGCLRKFD-VGCYIRRY 526 >gi|163840006|ref|YP_001624411.1| deoxyribodipyrimidine photolyase [Renibacterium salmoninarum ATCC 33209] gi|162953482|gb|ABY22997.1| deoxyribodipyrimidine photolyase [Renibacterium salmoninarum ATCC 33209] Length = 91 Score = 44.3 bits (103), Expect = 0.050, Method: Compositional matrix adjust. Identities = 26/69 (37%), Positives = 37/69 (53%), Gaps = 4/69 (5%) Query: 234 RDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRH 293 RD PA+ TS+LSP+L G LSP Q W L++ + F +E+ WREF H Sbjct: 3 RDNPAMAATSKLSPHLRFGELSPFQVWAALRQS--PGIAAEDERVFR--SEVGWREFCWH 58 Query: 294 LMAFYPSVC 302 L+ +P + Sbjct: 59 LLYHHPDLA 67 >gi|170595219|ref|XP_001902292.1| FAD binding domain of DNA photolyase family protein [Brugia malayi] gi|158590106|gb|EDP28860.1| FAD binding domain of DNA photolyase family protein [Brugia malayi] Length = 442 Score = 43.9 bits (102), Expect = 0.054, Method: Compositional matrix adjust. Identities = 29/88 (32%), Positives = 42/88 (47%), Gaps = 5/88 (5%) Query: 211 GEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDL 270 GE AL +L F + Y E+R+IP S LSPY+ G+L+P ++K+ Sbjct: 184 GEDAALQVLDYFIVNNLNTYDEERNIPNSGKQSLLSPYIHFGMLNPIMIVVKVKQSEA-- 241 Query: 271 LIKPKSGAFSWLNELIWREFYRHLMAFY 298 PKS ++L EL+ R H Y Sbjct: 242 ---PKSAKDAFLEELVVRRELAHNFVXY 266 >gi|217074550|gb|ACJ85635.1| unknown [Medicago truncatula] Length = 220 Score = 43.9 bits (102), Expect = 0.055, Method: Compositional matrix adjust. Identities = 45/176 (25%), Positives = 70/176 (39%), Gaps = 37/176 (21%) Query: 158 YTPFR----KALIQNLVQA--DLRSLPVPAIRLTGPVTPSNIPRFFDYPF---------- 201 Y FR K I+ ++A L+ LP G V +IP D Sbjct: 33 YGGFRDRVQKLEIRKTIEALDQLKGLPS-----RGDVQLGDIPTLMDLGLNPSAIMSQDG 87 Query: 202 -QAIDPMFPIGEQNALHILRKFCKE------KVYYYVEQRDIPAIQGTSQLSPYLSIGVL 254 Q + GE AL L++F E K + Q I + ++SP+L++G L Sbjct: 88 KQVPNSSMTGGETEALQRLKRFAAECEAQSNKGFKDGAQDSIYGANFSCKISPWLAMGCL 147 Query: 255 SPRQCWNRLKEEFVDLLI---------KPKSGAFSWLNELIWREFYRHLMAFYPSV 301 SPR ++ LK+ + K+G + EL+WR+F+R + Y S Sbjct: 148 SPRAMFDELKKTASSAVSASSSKNDGGSSKTGTNWLMFELLWRDFFRFITKKYSST 203 >gi|226228098|ref|YP_002762204.1| deoxyribodipyrimidine photolyase [Gemmatimonas aurantiaca T-27] gi|226091289|dbj|BAH39734.1| deoxyribodipyrimidine photolyase [Gemmatimonas aurantiaca T-27] Length = 495 Score = 43.9 bits (102), Expect = 0.061, Method: Compositional matrix adjust. Identities = 81/381 (21%), Positives = 143/381 (37%), Gaps = 49/381 (12%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 L W+++ R+ DN L AA +D + V + SAR FI + Sbjct: 38 LYWMQSTHRLDDNWGLRAAIRTADRLKLPVVVHQGLDPTYPHASARHHTFILQGARDTAR 97 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRV--TKLFYNRQYEINEVRRDKLLEKRLQ 128 GI +Q+ D +D + V T LF R+++ R Sbjct: 98 QAEALGIHYQFVLRPQRTDDARVVDRLAARAYVVFTDLFPTAGV------RERV--ARFA 149 Query: 129 HRVICKSFD-DSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQ--------ADLRSLPV 179 RV C+ DSV P + A + P L+ + ++ +D+ + Sbjct: 150 QRVTCRVLAVDSVCTVPSGLFEKAEYAARTIRPKLARLLAHAIEPVEDHTPRSDVSTSLA 209 Query: 180 PAIRLT----GPVTPSNIPRFFDYPFQ------AID------PMFPIGEQNALHILRKFC 223 ++R T G + P +I + D AID PM P G A +F Sbjct: 210 TSLRATVAEGGGLVPLDIAQMDDAAIARTVAGCAIDHDVCAVPM-PGGSSAANARWTRFL 268 Query: 224 KEKVYYYVEQRDIPAI-QGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWL 282 + + Y E+R+ + +GTS+LSPYL G +S + ++ V + +++ Sbjct: 269 EHGLPQYDERRNEASDGEGTSRLSPYLHFGQISSARVVREAQQAGVG-----AANLDAFV 323 Query: 283 NEL-IWREFYRHLMAFYPSVCMGKPFIPWTEKI------EWNKDSHLLQAWKQGYTGFPI 335 ++ WRE + P+ W ++ + + + ++ TG + Sbjct: 324 QQITTWRELSYNWCVRTPAFDQLSALPAWVQRTMQEHVNDPRPELYTRDQLERAQTGDRL 383 Query: 336 IDAAMRQLNTIGWMHNRLRMI 356 +AA +L G +HN RM+ Sbjct: 384 WNAAQTELVQEGIIHNYPRML 404 >gi|77920307|ref|YP_358122.1| deoxyribodipyrimidine photolyase [Pelobacter carbinolicus DSM 2380] gi|77546390|gb|ABA89952.1| Deoxyribodipyrimidine photo-lyase type II [Pelobacter carbinolicus DSM 2380] Length = 490 Score = 43.9 bits (102), Expect = 0.065, Method: Compositional matrix adjust. Identities = 52/186 (27%), Positives = 78/186 (41%), Gaps = 25/186 (13%) Query: 195 RFFDYPFQAIDPMFPI--GEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIG 252 R + P P P G + A L F +E + YV R+ P TS LSPYL G Sbjct: 221 RLHNLPIGQNTPAVPTKGGSEAARKALDLFLREHLDLYVAHRNQPQRDVTSGLSPYLRWG 280 Query: 253 VLSPRQCWNRLKEEF----VDLLIKPKSGAFSW----------LNELI-WREFYRHLMAF 297 +S + RL + DL ++ + W L++L+ WRE HL F Sbjct: 281 HISSHEIVQRLLDREGWHPSDLGLETRGQRSGWWGVGADAEAFLDQLVTWRELG-HLFCF 339 Query: 298 YPSVCMGKPFIP-WTEKI--EWNKDS----HLLQAWKQGYTGFPIIDAAMRQLNTIGWMH 350 +P W + + +D + L+ ++ G T P+ +AA QL G +H Sbjct: 340 KRHDYDRMESLPAWAQTTLQDHMQDPRPYLYSLEEFQAGRTHDPLWNAAQMQLVREGRLH 399 Query: 351 NRLRMI 356 N LRM+ Sbjct: 400 NYLRML 405 >gi|291334324|gb|ADD93984.1| deoxyribodipyrimidine photolyase [uncultured marine bacterium MedDCM-OCT-S09-C3] Length = 496 Score = 43.5 bits (101), Expect = 0.069, Method: Compositional matrix adjust. Identities = 44/167 (26%), Positives = 73/167 (43%), Gaps = 21/167 (12%) Query: 211 GEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRL--KEEFV 268 G A L+KF ++++ Y R+ P G S LSP+L G +S + N + +++ Sbjct: 247 GSVTARTELKKFIEQRLNTYHVDRNHPERHGGSGLSPWLHFGHISSFEIVNEVLTSQKWN 306 Query: 269 DLLIKP------------KSGAFSWLNELI-WREFYRHLMAFYPSVCMGKPFIPWTEKI- 314 +LI P GA ++L+++I WRE +P + W +K Sbjct: 307 PMLITPPHNGRRAGWWGLSEGAEAFLDQVITWRELGFVYCYEHPDHTSYQTLPEWAKKTL 366 Query: 315 -EWNKDS----HLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMI 356 E D + + + T P+ +AA QL G +HN LRM+ Sbjct: 367 EEHATDERPYVYTFEQLENAETHDPLWNAAQTQLRKEGIIHNYLRML 413 >gi|71733126|gb|AAZ40188.1| DNA-photolyase [Synechocystis sp. PCC 6803] Length = 60 Score = 43.5 bits (101), Expect = 0.075, Method: Composition-based stats. Identities = 23/56 (41%), Positives = 30/56 (53%), Gaps = 1/56 (1%) Query: 241 GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAF-SWLNELIWREFYRHLM 295 GTSQLS L GV+SPR W E + + + +W EL WREFY+H + Sbjct: 2 GTSQLSAALKFGVISPRTLWQTTLEAWEQSRSEEARASIETWQQELAWREFYQHCL 57 >gi|221057079|ref|XP_002259677.1| deoxyribodipyrimidine photolyase (photoreactivating enzyme, DNA photolyase) [Plasmodium knowlesi strain H] gi|193809749|emb|CAQ40451.1| deoxyribodipyrimidine photolyase (photoreactivating enzyme, DNA photolyase), putative [Plasmodium knowlesi strain H] Length = 923 Score = 43.5 bits (101), Expect = 0.076, Method: Compositional matrix adjust. Identities = 26/97 (26%), Positives = 50/97 (51%), Gaps = 1/97 (1%) Query: 203 AIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNR 262 A+ P F + E+ A +L+ FC + + Y +R+ P S L PY+++G++S ++C Sbjct: 634 AVVPNFVLTEKKAEELLKDFCSKVLDKYNVKRNDPNSDAGSVLLPYVNLGIISSQRCVLE 693 Query: 263 L-KEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFY 298 + K + + I SG S+ ++ I R+ +Y Sbjct: 694 VHKHAYNNPSINAVSGKESFSDDFIMRKELADNYCYY 730 >gi|119357754|ref|YP_912398.1| deoxyribodipyrimidine photo-lyase type II [Chlorobium phaeobacteroides DSM 266] gi|119355103|gb|ABL65974.1| Deoxyribodipyrimidine photo-lyase type II [Chlorobium phaeobacteroides DSM 266] Length = 468 Score = 43.5 bits (101), Expect = 0.077, Method: Compositional matrix adjust. Identities = 40/152 (26%), Positives = 65/152 (42%), Gaps = 12/152 (7%) Query: 211 GEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDL 270 GE A L F K ++ Y R+ P SQLSPYL G +S + R+ E Sbjct: 230 GETAAAESLENFIKSRLSGYATARNDPNSNALSQLSPYLHFGQISAQHVALRVAESRA-- 287 Query: 271 LIKPKSGAFSWLNEL-IWREFYRHLMAFYPSVCMGKPFIPWTEKI----EWNKDSHL--L 323 P+ ++L EL I RE + + PS + W ++ +K +L + Sbjct: 288 ---PQKDKTAFLEELIIRRELSDNFCNYNPSYDRFEGIPAWAKQTLLLHGQDKREYLYTI 344 Query: 324 QAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRM 355 +++ T + +AA +L G +H +RM Sbjct: 345 DVFEKAATHDKLWNAAQSELVQSGKIHGYMRM 376 >gi|68304208|ref|YP_249676.1| DNA photolyase 2 [Chrysodeixis chalcites nucleopolyhedrovirus] gi|67973037|gb|AAY84003.1| DNA photolyase 2 [Chrysodeixis chalcites nucleopolyhedrovirus] Length = 489 Score = 43.5 bits (101), Expect = 0.082, Method: Compositional matrix adjust. Identities = 91/373 (24%), Positives = 148/373 (39%), Gaps = 48/373 (12%) Query: 13 WLRNDLRITDNKALYAA---CHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69 W+ D R+ DN AL A H + + VF T + S RQ HF+ L +V+ Sbjct: 52 WMSRDSRVQDNWALIYAQELAHTAKLPLYVVFCMTKSF---NNASMRQFHFLIKGLEEVR 108 Query: 70 KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINE-VRRDKLLEKRLQ 128 + I F S +W+ + + V +N + E V R + +L Sbjct: 109 VECQKLDITFVMLDGSADLVLNDWVREHDICAVVCD--FNPLRTVREWVSR---IRDQLP 163 Query: 129 HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIR----- 183 V D ++P N Q Y F + + + ++ L+ P P +R Sbjct: 164 DTVYFAQVDAHNVVPCWVASNK--QEYSAM--FMRKKLNSKLECYLKPFP-PVVRHEYRS 218 Query: 184 --LTGPVTPSNI-------PRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQR 234 + P T ++I R D +D + P G +AL++L +F + + Y R Sbjct: 219 SVVLDPCTTTHIDWQQLLASRDADVSVGPVDWIEP-GYISALNVLARFIRCNLLKYKMSR 277 Query: 235 DIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHL 294 + P ++ S +SP+ G +S ++ L ++ K SG S +N+ I F R Sbjct: 278 NNPVLKTQSNMSPFYHFGQISVQRVMLHLNSLKIN---KNDSGIDSNINDYIEECFVRRE 334 Query: 295 MA----FYPS---VCMGKPFIPWTEKIEWNKDSH-----LLQAWKQGYTGFPIIDAAMRQ 342 +A FY S +G P + DS LLQ ++ T + +AA RQ Sbjct: 335 LADNFCFYNSNYDTFLGAPNWAKETLVIHKSDSRQYIYSLLQ-FEHNQTHDELWNAAQRQ 393 Query: 343 LNTIGWMHNRLRM 355 L G +H LRM Sbjct: 394 LRNEGKIHGYLRM 406 >gi|297743900|emb|CBI36870.3| unnamed protein product [Vitis vinifera] Length = 190 Score = 43.5 bits (101), Expect = 0.083, Method: Compositional matrix adjust. Identities = 38/152 (25%), Positives = 58/152 (38%), Gaps = 29/152 (19%) Query: 174 LRSLPVPAIRLTGPVTPSNIPRFFDYPFQ-----------AIDPMFPIGEQNALHILRKF 222 LR LP G V IP D + GE AL L+KF Sbjct: 27 LRGLPA-----RGDVEAGEIPSLLDLGLSPSATLPQNGMSTANGSLVGGETEALQRLKKF 81 Query: 223 ---CKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKS--- 276 C+ + I + ++SP+L++G LSPR ++ +K+ + S Sbjct: 82 AAECQAQPPKGAANDSIYGANFSCKISPWLAMGCLSPRSMFDEIKKSASRTISASTSKDG 141 Query: 277 ------GAFSWLN-ELIWREFYRHLMAFYPSV 301 +WL EL+WR+F+R + Y S Sbjct: 142 GSGQSDTGMNWLMFELMWRDFFRFITKKYSSA 173 >gi|298162586|gb|ADI59660.1| cryptochrome [Paralichthys olivaceus] Length = 96 Score = 43.1 bits (100), Expect = 0.089, Method: Composition-based stats. Identities = 26/77 (33%), Positives = 36/77 (46%), Gaps = 1/77 (1%) Query: 309 PWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK-DLLV 367 P I W+++ L W +G FP I A M QL G + + R A FL + L + Sbjct: 17 PICVMIPWDRNPKALAKWAEGRRSFPWIHAIMTQLTLDGRIDHLARHAVACFLTRGHLRI 76 Query: 368 DWRIGEEYFMSQLLDGD 384 W+ G + F LLD D Sbjct: 77 TWKEGLKVFEELLLDAD 93 >gi|124006828|ref|ZP_01691658.1| photolyase protein family [Microscilla marina ATCC 23134] gi|123987509|gb|EAY27218.1| photolyase protein family [Microscilla marina ATCC 23134] Length = 425 Score = 43.1 bits (100), Expect = 0.094, Method: Compositional matrix adjust. Identities = 50/206 (24%), Positives = 88/206 (42%), Gaps = 32/206 (15%) Query: 206 PMFPIGEQNALHILRKFCKEKVYYYVEQRDI----PAIQGTSQLSPYLSIGVLSPRQCWN 261 P++ +A L+ F E++ + D I S L+P L++G+L+PRQ + Sbjct: 143 PLYATNFADAEAWLQAFLTERLAEFGTYEDAIVQEEVILNHSVLTPMLNVGLLTPRQVID 202 Query: 262 RLKEEFVDLLIKPKSGAFSWLNELI-WREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDS 320 F P + ++ ++I WREF R + + + K + +T KI Sbjct: 203 NTL-AFSQAQQVPLNSLEGFVRQIIGWREFIRGVYQYKGTEERTKNYWGFTRKIP----- 256 Query: 321 HLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLR-MITASFLV-------------KDLL 366 ++ +G TG +D ++++ G+ H+ R M+ +F+V +L Sbjct: 257 ---PSFYEGTTGITPVDVTIKKVLKTGYCHHIERLMVLGNFMVLCEFDPDEVYRWFMELF 313 Query: 367 V---DW-RIGEEYFMSQLLDGDLASN 388 V DW + Y MSQ DG L S Sbjct: 314 VDAYDWVMVPNVYGMSQFADGGLMST 339 >gi|20092859|ref|NP_618934.1| deoxyribodipyrimidine photolyase [Methanosarcina acetivorans C2A] gi|19918164|gb|AAM07414.1| deoxyribodipyrimidine photolyase [Methanosarcina acetivorans C2A] Length = 462 Score = 43.1 bits (100), Expect = 0.097, Method: Compositional matrix adjust. Identities = 39/155 (25%), Positives = 71/155 (45%), Gaps = 12/155 (7%) Query: 208 FPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEF 267 F GE+ A + F ++ Y R+ P S LSPYL G +S ++ +++ Sbjct: 228 FEPGEKAARKEMESFLAARLDSYNTLRNDPTKNALSNLSPYLHFGQISAQRVVLEVEKAK 287 Query: 268 VDLLIKPKSGAFSWLNE-LIWREFYRHLMAFYPSVCMGKPFIPWTEKI------EWNKDS 320 D P+S ++L+E L+W+E + + P + F W +K + K Sbjct: 288 SD----PESKK-AFLDEILVWKEIADNFCYYNPGYDSFESFPDWAKKSLNAHRNDRRKYI 342 Query: 321 HLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRM 355 + + ++ G T P+ +A+ +L G MH+ +RM Sbjct: 343 YTFEEFEAGKTHDPLWNASQIELLRTGKMHSYMRM 377 >gi|110596745|ref|ZP_01385035.1| deoxyribodipyrimidine photolyase [Chlorobium ferrooxidans DSM 13031] gi|110341432|gb|EAT59892.1| deoxyribodipyrimidine photolyase [Chlorobium ferrooxidans DSM 13031] Length = 450 Score = 43.1 bits (100), Expect = 0.099, Method: Compositional matrix adjust. Identities = 67/293 (22%), Positives = 115/293 (39%), Gaps = 45/293 (15%) Query: 156 KVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPSNIPRFF--DYPFQAIDPMFPIGEQ 213 + + P K+L+ L+ + P+ A + PV S+I D+ ++ + P GE+ Sbjct: 160 RTFRPKIKSLLGELLTGFPQLEPLEATTESHPVDWSSISCSLKADHRVAPVEWLKP-GEE 218 Query: 214 NALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIK 273 A + L F ++++ Y E R+ P S LSPYL G +S + R+ E + Sbjct: 219 AAANCLDTFLEKRLSSYAELRNDPNSGVLSNLSPYLHFGQISAQYIALRVSESRM----- 273 Query: 274 PKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDS------------H 321 P ++L ELI R FY + + W K+S + Sbjct: 274 PDESRSAFLEELIVRRELSDNYCFY-----NDRYDSFDGSPTWAKESLMNHRNDHREYLY 328 Query: 322 LLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQL- 380 + T + +AA +L T G +H +RM + K +L E+ F + + Sbjct: 329 TADEFATAKTHDRLWNAAQLELVTTGKIHGYMRM----YWAKKILEWSESAEQAFETAMA 384 Query: 381 ------LDGDLASNNGGWQWAASTGNDSVPYF--------RIFNPTIQGKRFD 419 LDG + G W+ +D P+F R N + ++FD Sbjct: 385 LNDRYALDGRDPNGYAGVAWSIGGVHDR-PWFERPVYGKIRYMNASGCARKFD 436 >gi|189424834|ref|YP_001952011.1| deoxyribodipyrimidine photolyase [Geobacter lovleyi SZ] gi|189421093|gb|ACD95491.1| deoxyribodipyrimidine photolyase [Geobacter lovleyi SZ] Length = 447 Score = 43.1 bits (100), Expect = 0.11, Method: Compositional matrix adjust. Identities = 21/56 (37%), Positives = 30/56 (53%) Query: 203 AIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQ 258 + P F GEQ A L F + + Y +R+ P + G S LSP+L G LSP++ Sbjct: 210 GVVPGFRPGEQAAFEALADFIAQGLNGYASRRNDPTVHGQSGLSPWLHFGHLSPQR 265 >gi|92429522|gb|ABD93505.2| DNA photolyase protein [Physalis sp. TA1367] Length = 190 Score = 43.1 bits (100), Expect = 0.11, Method: Compositional matrix adjust. Identities = 51/204 (25%), Positives = 86/204 (42%), Gaps = 32/204 (15%) Query: 12 VWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISAR--------QSHFIYA 63 VW RNDLR+ DN+ L AA HN V+ V+ P R +G S+ ++ F+ Sbjct: 1 VWFRNDLRVHDNECLNAA-HNESMSVLPVYCFDP---RDYGKSSSGFDKTGPYRATFLIE 56 Query: 64 SLLQVQKSLSQKG--IVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDK 121 S+ ++K+L +G +V + + L ++ +R+ +EV+ ++ Sbjct: 57 SVADLKKNLQARGSDLVVRIGKPETV------LVELAKAVGAEAVYAHREVSYDEVKGEE 110 Query: 122 LLEKRLQHR-VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKAL----IQNLVQA--DL 174 +E ++ V K F S L + M Y FR+ + I+ ++A + Sbjct: 111 KIEGVMKDEGVDVKFFWGSTLYHVDDLPFKLEGMPTNYGGFREKVKGLEIRKTIEALDQM 170 Query: 175 RSLPVPAIRLTGPVTPSNIPRFFD 198 R LP G V P IP D Sbjct: 171 RGLPA-----RGDVEPGEIPSLVD 189 >gi|87311465|ref|ZP_01093585.1| deoxyribodipyrimidine photolyase [Blastopirellula marina DSM 3645] gi|87285877|gb|EAQ77791.1| deoxyribodipyrimidine photolyase [Blastopirellula marina DSM 3645] Length = 494 Score = 42.7 bits (99), Expect = 0.12, Method: Compositional matrix adjust. Identities = 49/175 (28%), Positives = 69/175 (39%), Gaps = 25/175 (14%) Query: 205 DPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIG---------VLS 255 D + G A L F +++ Y E+R+ P S LSPYL G LS Sbjct: 234 DAVMEGGSVAAQQTLDSFLGDRLLRYGEERNSPESDAASGLSPYLHFGHISAHDIFVQLS 293 Query: 256 PRQCWNRLKEEFVDLLIKPKSG-------AFSWLNELI-WREFYRHLMAFYPSVCMGKPF 307 R+ WN D + G A S+L+ELI WRE ++ + + + Sbjct: 294 ERESWN--VSHLADKATGSREGWWNMSTDAESFLDELITWREVGYNMCSRESNYDRYQSL 351 Query: 308 IPWTEKI--EWNKDS----HLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMI 356 W E KD + L + T + +AA QL G MHN LRM+ Sbjct: 352 PDWALVTLGEHQKDPRPYVYDLAQLESSRTHDQLWNAAQSQLVREGRMHNYLRML 406 >gi|188586748|ref|YP_001918293.1| Deoxyribodipyrimidine photo-lyase [Natranaerobius thermophilus JW/NM-WN-LF] gi|179351435|gb|ACB85705.1| Deoxyribodipyrimidine photo-lyase [Natranaerobius thermophilus JW/NM-WN-LF] Length = 456 Score = 42.7 bits (99), Expect = 0.12, Method: Compositional matrix adjust. Identities = 42/156 (26%), Positives = 73/156 (46%), Gaps = 20/156 (12%) Query: 211 GEQNALHILRKFCKEK--VYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFV 268 GE AL L F + + Y+++++ P++Q TS+LSPYL G +SP F+ Sbjct: 228 GENQALEQLSGFLNQGKGLELYIQKKNDPSVQATSKLSPYLHFGQISPL---------FI 278 Query: 269 DLLIKPKSGAFS--WLNELIW-REFYRHLMAFYPSVCMGKPFIPWTEKI--EWNKDS--- 320 L + + ++ +L +LI RE +L+ + P W+ K E D Sbjct: 279 ALEVLKFTQDYNHEFLEQLIVRRELSLNLIEKNINYLTLSPLPQWSIKTLNEHRNDPRNN 338 Query: 321 -HLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRM 355 + L+ + T +AA ++L + G +HN +RM Sbjct: 339 FYTLEEIEAANTHDKYFNAAQKELMSRGTIHNYIRM 374 >gi|109899107|ref|YP_662362.1| deoxyribodipyrimidine photolyase-related protein [Pseudoalteromonas atlantica T6c] gi|109701388|gb|ABG41308.1| deoxyribodipyrimidine photolyase-related protein [Pseudoalteromonas atlantica T6c] Length = 503 Score = 42.7 bits (99), Expect = 0.12, Method: Compositional matrix adjust. Identities = 56/235 (23%), Positives = 101/235 (42%), Gaps = 32/235 (13%) Query: 196 FFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGT-----SQLSPYLS 250 F D+P ++P+ ++A L F +++ Y+ D ++G S L+P L+ Sbjct: 222 FSDHPGNGQTIIYPVTHEDAQLWLTAFFEQRFKYFGRFED-AIVEGQNWLYHSVLTPMLN 280 Query: 251 IGVLSPRQCWNR----LKEEFVDLLIKPKSGAFSWLNELI-WREFYRHLMAFYPSVCMGK 305 IG+L+P+Q ++ E VDL + ++ ++I WREF R A Y + Sbjct: 281 IGLLTPKQVISQAIQCADEHEVDL-----ASLEGFVRQIIGWREFMR---ATYSDIG--- 329 Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHN--RLRMITASFLVK 363 + + W + A+ G TG +D ++++ G+ H+ RL ++ F + Sbjct: 330 --VSMRTQNHWQHKRKIPSAFYTGDTGIIPLDDTIKRILQTGYCHHIERLMVLGGFFFLC 387 Query: 364 DLLVDWRIGEEYFMSQLLDG---DLASNNGGWQWAASTGNDSV-PYFRIFNPTIQ 414 + D G +FM +D + SN A G + PYF N I+ Sbjct: 388 EFEPDEIYG--WFMDMFIDSYDWVMVSNVYAMSQHADGGQITTKPYFSGSNYIIK 440 >gi|156392837|ref|XP_001636254.1| predicted protein [Nematostella vectensis] gi|156223355|gb|EDO44191.1| predicted protein [Nematostella vectensis] Length = 382 Score = 42.7 bits (99), Expect = 0.13, Method: Compositional matrix adjust. Identities = 41/165 (24%), Positives = 70/165 (42%), Gaps = 20/165 (12%) Query: 211 GEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDL 270 G L +L FCK+++ Y+ R+ P + S LSP+ G +SP++ R++ D Sbjct: 150 GTAEGLFMLESFCKDRLKYFHSSRNDPTKRALSNLSPWFHTGQISPQRAILRVR----DF 205 Query: 271 LIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEW----------NKDS 320 K + S++ E I R +Y + + + EW +K Sbjct: 206 RSKFRESVESFIEECIIRRELSDNFCYYNN----EKYDSIEGTNEWARKTLNDHAKDKRE 261 Query: 321 HLLQAWK--QGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363 +L K + T + +AA RQL G +H LRM A +++ Sbjct: 262 YLYARGKLEKAQTHDDLWNAAQRQLVREGKLHGFLRMYWAKKILE 306 >gi|325187408|emb|CCA21946.1| deoxyribodipyrimidine photolyase putative [Albugo laibachii Nc14] Length = 532 Score = 42.7 bits (99), Expect = 0.14, Method: Compositional matrix adjust. Identities = 48/173 (27%), Positives = 72/173 (41%), Gaps = 24/173 (13%) Query: 197 FDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSP 256 D ++D + GE A + F K K+ Y E R+ P G+S LS YL G +SP Sbjct: 283 LDRSVVSVDSIIG-GEDEAERHTQDFAKNKLSKYAEARNEPGADGSSNLSCYLHYGHISP 341 Query: 257 RQCWNRLKEEFVDLLIK------PKSGAFSWLNELI-WREFYRHLMAFYPSVCMGKPFIP 309 W + LL+K K+ ++L E+I RE + + + P+ IP Sbjct: 342 --VW-------IALLVKNIDNENSKNSRDAFLEEMIVRRELSVNFVVYNPNFYDSFEGIP 392 Query: 310 WTEKIEWN-----KDSHL--LQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRM 355 K N K H+ L + G T +AA ++ G MH +RM Sbjct: 393 NFAKKTLNDHRGDKRPHIYSLDDLESGRTDDNYWNAAQLEVVHSGQMHGYMRM 445 >gi|221505029|gb|EEE30683.1| DNA photolyase, putative [Toxoplasma gondii VEG] Length = 631 Score = 42.7 bits (99), Expect = 0.14, Method: Compositional matrix adjust. Identities = 46/169 (27%), Positives = 75/169 (44%), Gaps = 22/169 (13%) Query: 205 DPMFPI-----GEQNALHILRKFCKEK-VYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQ 258 DP P+ G + AL +L F K + Y + R+ P S LSPY+ G +S ++ Sbjct: 277 DPPEPLDSWKPGTKAALELLHSFATPKNLAEYGKSRNDPVAGVQSDLSPYIHFGHISVQR 336 Query: 259 CW---NRLKEEFVDLLIKPKSGAFSWLNELIWR-EFYRHLMAFYP--SVCMGKPFIPWTE 312 C ++LK D + K G S+++E++ R + + + F P G P W + Sbjct: 337 CLLEVSKLKSTAADKTL--KEGVMSFIDEVVVRSQLSDNFVFFNPHYDDIKGAPL--WAQ 392 Query: 313 KI------EWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRM 355 + + + + A + G T + +AA QL G MH LRM Sbjct: 393 QTLNIHAKDKREPHYGFAALEAGKTYDELWNAAQLQLVRDGKMHGYLRM 441 >gi|221481951|gb|EEE20317.1| DNA photolyase, putative [Toxoplasma gondii GT1] Length = 631 Score = 42.7 bits (99), Expect = 0.15, Method: Compositional matrix adjust. Identities = 47/169 (27%), Positives = 76/169 (44%), Gaps = 22/169 (13%) Query: 205 DPMFPI-----GEQNALHILRKFCKEK-VYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQ 258 DP P+ G + AL +L F K + Y + R+ P S LSPY+ G +S ++ Sbjct: 277 DPPEPLDSWKPGTKAALELLHSFATPKNLAEYGKSRNDPVAGVQSDLSPYIHFGHISVQR 336 Query: 259 CW---NRLKEEFVDLLIKPKSGAFSWLNELIWR-EFYRHLMAFYP--SVCMGKPFIPWTE 312 C ++LK D + K G S+++E++ R + + + F P G P W + Sbjct: 337 CLLEVSKLKSTAADKTL--KEGVMSFIDEVVVRSQLSDNFVFFNPHYDDIKGAPL--WAQ 392 Query: 313 KI-----EWNKDSHL-LQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRM 355 + + ++ H A + G T + +AA QL G MH LRM Sbjct: 393 QTLNIHAKDKREPHYGFAALEAGKTYDELWNAAQLQLVRDGKMHGYLRM 441 >gi|15678924|ref|NP_276041.1| DNA deoxyribodipyrimidine photolyase (photoreactivation) [Methanothermobacter thermautotrophicus str. Delta H] gi|2507184|sp|P12769|PHR_METTH RecName: Full=Deoxyribodipyrimidine photo-lyase; AltName: Full=DNA photolyase; AltName: Full=Photoreactivating enzyme gi|639674|dbj|BAA06411.1| photolyase [Methanothermobacter thermautotrophicus] gi|2622000|gb|AAB85402.1| DNA deoxyribodipyrimidine photolyase (photoreactivation) [Methanothermobacter thermautotrophicus str. Delta H] Length = 445 Score = 42.4 bits (98), Expect = 0.15, Method: Compositional matrix adjust. Identities = 50/232 (21%), Positives = 97/232 (41%), Gaps = 27/232 (11%) Query: 137 DDSVLLPPGSILNHALQMYKVYTP-FRKALIQNLVQADLRSLPVPAIRLTGPVTPSNIPR 195 + +V++P + + + P ++ L + +V +R+L + ++ L + R Sbjct: 141 ESNVIVPVETASDKEEYSAGTFKPKIKRHLKRFMVPLRMRTLKMDSLDLEPGPEFEDAVR 200 Query: 196 FFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLS 255 F P +F G AL I +F +EK+ + R+ P S +SPYL G +S Sbjct: 201 DFRAPEDLEPSVFRGGTSTALSIFSEFLREKLECFERYRNDPVKNCLSNMSPYLHFGQIS 260 Query: 256 PRQCWNRLKE-----EFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSV-CMGKPFIP 309 P R E EF++ LI + + +++ H Y S+ C+ + Sbjct: 261 PLYLALRASEAGECPEFLEELIVRRELSMNFV----------HYSDSYSSISCLPE---- 306 Query: 310 WTEKI------EWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRM 355 W ++ + + + L+ + T P +AA +++ G MH +RM Sbjct: 307 WAQRTLMDHVADPREYEYSLRELESASTHDPYWNAAQQEMVITGKMHGYMRM 358 >gi|313228121|emb|CBY23271.1| unnamed protein product [Oikopleura dioica] Length = 361 Score = 42.4 bits (98), Expect = 0.15, Method: Compositional matrix adjust. Identities = 79/313 (25%), Positives = 122/313 (38%), Gaps = 43/313 (13%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSH---FIYASLLQ 67 L R D R+ DN AA SD K+I FI TPEQ S + + F+ SL Sbjct: 8 LFIFRRDYRLFDNVGWIAAAKASD-KIIPAFIFTPEQIDASKNSYKNDNCVQFMIESLKD 66 Query: 68 VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127 + K L K +F D I V ++ N Y +RD +E Sbjct: 67 LDKQLEGKLSLFYGANTVVVADLISEFG-------VDAVYVNADYTPYSKKRDADIEAIC 119 Query: 128 -QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLR-SLPVPAIRLT 185 +H+V S D L+ PG I+ K T F + +++ R S P I + Sbjct: 120 DEHQVPFVSSHDMCLVDPGEIV------IKEGTKFEPSFFNKVMELKTRKSEAAPEIS-S 172 Query: 186 GPVTPSNIPRFFDYPFQAIDPMFPI----GEQNALHILRKFCKEK-------VYYYVEQR 234 V S + + D I G AL I+ K +K V + Sbjct: 173 EKVKKSEFSIDWKKTKEFYDKNDKIELKGGRSVALKIIEKVKSDKFQKQYGCVPTAFREG 232 Query: 235 DIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHL 294 P ++ T++L+ YL G +S R+ + EEF L + + + I R+++ H+ Sbjct: 233 TFPKMK-TTELAAYLRFGCVSTRE----VVEEFEKLNKR------MLITQTIRRDYWVHM 281 Query: 295 MAFYP-SVCMGKP 306 +P + +GKP Sbjct: 282 FHNFPHQMGIGKP 294 >gi|70934909|ref|XP_738613.1| deoxyribodipyrimidine photolyase (photoreactivating enzyme, DNA photolyase) [Plasmodium chabaudi chabaudi] gi|56514975|emb|CAH79340.1| deoxyribodipyrimidine photolyase (photoreactivating enzyme, DNA photolyase), putative [Plasmodium chabaudi chabaudi] Length = 368 Score = 42.4 bits (98), Expect = 0.16, Method: Compositional matrix adjust. Identities = 39/156 (25%), Positives = 70/156 (44%), Gaps = 8/156 (5%) Query: 208 FPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEF 267 F E+ A +L FCK K+ Y +R+ P + L PY+++G++S ++C + + Sbjct: 173 FVCTEKKARDVLEDFCKNKLDKYGVKRNDPNYDTINLLMPYINLGIISSQRCILEVNKYA 232 Query: 268 VDLLIKPKSGAFSWLNE--LIWREFYRHLMAF---YPSVCMGKPFIPWT-EKIEWNKDSH 321 + S + N+ LI +E + + Y + K + + +K E +K SH Sbjct: 233 LQFPSIHTSSGKEYFNDDLLIKKELADNFCYYNKNYDNFNGAKDWAKESLKKHELDKRSH 292 Query: 322 L--LQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRM 355 L + ++ T I + QL G +H LRM Sbjct: 293 LYDYEDFRNARTHNDIWNCCQLQLVNEGTIHEFLRM 328 >gi|312143870|ref|YP_003995316.1| DNA photolyase FAD-binding protein [Halanaerobium sp. 'sapolanicus'] gi|311904521|gb|ADQ14962.1| DNA photolyase FAD-binding protein [Halanaerobium sp. 'sapolanicus'] Length = 458 Score = 42.4 bits (98), Expect = 0.17, Method: Compositional matrix adjust. Identities = 41/155 (26%), Positives = 66/155 (42%), Gaps = 11/155 (7%) Query: 207 MFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRL--- 263 F G Q A L +F K+ Y E+R+IP S LSPYL G +S ++ R Sbjct: 220 FFKGGYQAAEQKLNEFLTNKIADYGEKRNIPYFDYQSDLSPYLHFGQISAQEIALRALEN 279 Query: 264 ---KEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDS 320 EEF++ LI + +F+++ + + L P +K ++N Sbjct: 280 SKEAEEFLEELIVRRELSFNFV--YYNQNYDGSLKDVLPDWAAKSLKKHAADKRDYN--- 334 Query: 321 HLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRM 355 + + K T +AA ++ G MHN +RM Sbjct: 335 YSYEQLKNAETHDQYWNAAQTEMKITGKMHNYMRM 369 >gi|218780190|ref|YP_002431508.1| deoxyribodipyrimidine photo-lyase [Desulfatibacillum alkenivorans AK-01] gi|218761574|gb|ACL04040.1| Deoxyribodipyrimidine photo-lyase [Desulfatibacillum alkenivorans AK-01] Length = 456 Score = 42.4 bits (98), Expect = 0.18, Method: Compositional matrix adjust. Identities = 55/230 (23%), Positives = 89/230 (38%), Gaps = 32/230 (13%) Query: 132 ICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPS 191 I + D+ +LLP L + ++ + IQ L +D SL L P TP Sbjct: 167 INRELDNFLLLPEKCALKNKVRDFD---------IQGLDLSDPASL---LKNLGMPETPP 214 Query: 192 NIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSI 251 + FF G A + KF ++ + Y + P + S + PYL Sbjct: 215 GVSAFFKG-----------GASAAQKRMDKFIQKSLDNYSRHHNRPDLADVSGMGPYLHF 263 Query: 252 GVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWT 311 G +S R+K D P++ A ++ RE + + F P+ W Sbjct: 264 GQVSAAALALRVKN-LKD--ADPEAQAAYLEQIIVRRELAMNFVHFTPNYDQYACLPTWA 320 Query: 312 EKI--EWNKDS----HLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRM 355 +K E +D + + T P +AAMR++ G+MHN +RM Sbjct: 321 QKTLKERAQDPRDPLYTPDQLEACDTHDPYWNAAMREMVVTGYMHNHMRM 370 >gi|324506249|gb|ADY42672.1| Deoxyribodipyrimidine photo-lyase [Ascaris suum] Length = 549 Score = 42.4 bits (98), Expect = 0.19, Method: Compositional matrix adjust. Identities = 30/94 (31%), Positives = 43/94 (45%), Gaps = 5/94 (5%) Query: 205 DPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLK 264 D F GE A +L F K+ Y R+IP + S LSPYL G++S + R+K Sbjct: 218 DSGFVGGETVAQRMLSFFISNKLVSYHPGRNIPGSKYQSLLSPYLHFGMISAIEIIKRVK 277 Query: 265 EEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFY 298 + PK S++ EL+ R H +Y Sbjct: 278 DAKA-----PKHAIDSFIEELLVRRDLSHNFVYY 306 >gi|68076095|ref|XP_679967.1| DNA photolyase FAD binding domain [Plasmodium berghei strain ANKA] gi|56500825|emb|CAH99772.1| FAD binding domain of DNA photolyase, putative [Plasmodium berghei] Length = 812 Score = 42.4 bits (98), Expect = 0.19, Method: Compositional matrix adjust. Identities = 39/156 (25%), Positives = 70/156 (44%), Gaps = 8/156 (5%) Query: 208 FPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEF 267 F E+ A IL FCK K+ Y +R+ P + L PY+++G++S ++C + + Sbjct: 513 FVCTEKKAKEILENFCKNKLDKYSVKRNDPNYDTINLLIPYINLGIISSQRCILEVNKYA 572 Query: 268 VDLLIKPKSGAFSWLNE--LIWREFYRHLMAF---YPSVCMGKPFIPWT-EKIEWNKDSH 321 + S + N+ LI +E + + Y + K + + +K E +K +H Sbjct: 573 LQFPSIHASSGKEYFNDDLLIKKELADNFCYYNKNYDNFNGAKDWAKESLKKHELDKRNH 632 Query: 322 L--LQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRM 355 L + ++ T I + QL G +H LRM Sbjct: 633 LYDYEDFRSARTHNDIWNCCQLQLVNEGTIHEFLRM 668 >gi|327342146|gb|AEA50860.1| cry1-2 [Populus tremula] Length = 104 Score = 42.0 bits (97), Expect = 0.20, Method: Composition-based stats. Identities = 33/103 (32%), Positives = 46/103 (44%), Gaps = 7/103 (6%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSH-FIYASLLQVQ 69 +VW R DLR+ DN AL A V+AVF+ PE+ H R S ++ SL + Sbjct: 8 IVWFRRDLRVEDNPALAAGVRA--GAVVAVFVWAPEE-EGHYYPGRVSRWWLKQSLAHLD 64 Query: 70 KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQY 112 SL G + + DS+ L T+LF+N Y Sbjct: 65 SSLRSLGTSLVTKRST---DSVSTLLEVIKSTGATQLFFNHLY 104 >gi|124506191|ref|XP_001351693.1| deoxyribodipyrimidine photolyase (photoreactivating enzyme, DNA photolyase), putative [Plasmodium falciparum 3D7] gi|23504621|emb|CAD51500.1| deoxyribodipyrimidine photolyase (photoreactivating enzyme, DNA photolyase), putative [Plasmodium falciparum 3D7] Length = 1113 Score = 42.0 bits (97), Expect = 0.20, Method: Compositional matrix adjust. Identities = 35/165 (21%), Positives = 67/165 (40%), Gaps = 26/165 (15%) Query: 208 FPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEF 267 F EQ A IL+ FC +K+ Y +++ P + + L+PY++ G++S ++C Sbjct: 829 FVCTEQKAHEILQNFCSKKLERYSLKKNDPNSEMINLLTPYINFGIISSQRCV------- 881 Query: 268 VDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVC-----MGKPFIPWTEKIEWNKDS-- 320 L + + ++ +N + +E + M + K + + +W KDS Sbjct: 882 --LEVNKYANSYPSINTISGKELFSEEMIMKKELADNFCYYNKNYDNFNGGKDWAKDSLK 939 Query: 321 ----------HLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRM 355 + +K T + + QL G +H LRM Sbjct: 940 KHDSDKREYLYDFDDFKNAKTHDDLWNCCQLQLINEGIIHEFLRM 984 >gi|92429524|gb|ABD93506.2| DNA photolyase protein [Solanum lycopersicum] Length = 189 Score = 42.0 bits (97), Expect = 0.21, Method: Compositional matrix adjust. Identities = 50/203 (24%), Positives = 86/203 (42%), Gaps = 32/203 (15%) Query: 13 WLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISAR--------QSHFIYAS 64 W RNDLR+ DN+ L AA HN V+AV+ P R +G S+ ++ F+ S Sbjct: 1 WFRNDLRVHDNECLNAA-HNESMSVLAVYCFDP---RDYGKSSSGFDKTGPYRASFLIDS 56 Query: 65 LLQVQKSLSQKG--IVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKL 122 + ++K+L +G +V + + L ++ +R+ +EV+ + Sbjct: 57 VADLRKNLQARGSDLVVRIGKPETV------LVELAKAVGAEAVYAHREVSHDEVKGEDK 110 Query: 123 LEKRLQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKAL----IQNLVQA--DLR 175 ++ ++ + K F S L + QM Y FR+ + ++ ++A LR Sbjct: 111 IDAVMKDEGLEVKYFWGSTLYHVDDLPFKLEQMPTNYGGFREKVQGLEVRKTIEALDQLR 170 Query: 176 SLPVPAIRLTGPVTPSNIPRFFD 198 LP G V P IP D Sbjct: 171 GLPA-----RGDVEPGEIPSLVD 188 >gi|237837047|ref|XP_002367821.1| DNA photolyase, putative [Toxoplasma gondii ME49] gi|211965485|gb|EEB00681.1| DNA photolyase, putative [Toxoplasma gondii ME49] Length = 631 Score = 42.0 bits (97), Expect = 0.22, Method: Compositional matrix adjust. Identities = 47/169 (27%), Positives = 76/169 (44%), Gaps = 22/169 (13%) Query: 205 DPMFPI-----GEQNALHILRKFCKEK-VYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQ 258 DP P+ G + AL +L F K + Y + R+ P S LSPY+ G +S ++ Sbjct: 277 DPPEPLDSWKPGTKAALELLHSFATPKNLAEYGKSRNDPLAGVQSDLSPYIHFGHISVQR 336 Query: 259 CW---NRLKEEFVDLLIKPKSGAFSWLNELIWR-EFYRHLMAFYP--SVCMGKPFIPWTE 312 C ++LK D + K G S+++E++ R + + + F P G P W + Sbjct: 337 CLLEVSKLKSTAADKTL--KEGVMSFIDEVVVRSQLSDNFVFFNPHYDDIKGAPL--WAQ 392 Query: 313 KI-----EWNKDSHL-LQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRM 355 + + ++ H A + G T + +AA QL G MH LRM Sbjct: 393 QTLNIHAKDKREPHYGFAALEAGKTYDELWNAAQLQLVRDGKMHGYLRM 441 >gi|227553401|ref|ZP_03983450.1| conserved hypothetical protein [Enterococcus faecalis HH22] gi|227177452|gb|EEI58424.1| conserved hypothetical protein [Enterococcus faecalis HH22] Length = 80 Score = 42.0 bits (97), Expect = 0.25, Method: Compositional matrix adjust. Identities = 26/67 (38%), Positives = 40/67 (59%), Gaps = 4/67 (5%) Query: 11 LVWLRNDLRITDNKALYAACHNSDA-KVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69 ++W R DLR+ DNKAL A NS A ++I +F P+Q+ Q SA + F +ASL + Sbjct: 4 VIWFRRDLRLQDNKALAHALQNSAADELILLFQMNPQQFIQE--SANHNAF-FASLASFK 60 Query: 70 KSLSQKG 76 + + Q+ Sbjct: 61 ERIDQEA 67 >gi|159469690|ref|XP_001692996.1| CPH-like protein [Chlamydomonas reinhardtii] gi|158277798|gb|EDP03565.1| CPH-like protein [Chlamydomonas reinhardtii] Length = 443 Score = 41.6 bits (96), Expect = 0.26, Method: Compositional matrix adjust. Identities = 20/44 (45%), Positives = 27/44 (61%), Gaps = 1/44 (2%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGIS 54 LVW RNDLR+ DN AL AC S + V+ V++ P + + G S Sbjct: 45 LVWFRNDLRLHDNPALEQACRQS-SSVLPVYVFDPRDYGKAGYS 87 >gi|83315336|ref|XP_730750.1| DNA photolyase [Plasmodium yoelii yoelii str. 17XNL] gi|23490568|gb|EAA22315.1| FAD binding domain of DNA photolyase, putative [Plasmodium yoelii yoelii] Length = 849 Score = 41.6 bits (96), Expect = 0.27, Method: Compositional matrix adjust. Identities = 41/163 (25%), Positives = 70/163 (42%), Gaps = 22/163 (13%) Query: 208 FPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCW---NRLK 264 F E+ A IL FCK K+ Y +R+ P + L PY+++G++S ++C N+ Sbjct: 549 FVCTEKKAREILEDFCKNKLDKYSVKRNDPNYDTINLLIPYINLGIISSQRCILEVNKYA 608 Query: 265 EEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDS---- 320 +F I SG + ++L+ ++ FY K + + +W K+S Sbjct: 609 LQFPS--IHASSGKEYFNDDLLIKKELADNFCFY-----NKNYDNFNGAKDWAKESLKKH 661 Query: 321 ------HL--LQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRM 355 HL + ++ T I + QL G +H LRM Sbjct: 662 ELDKRNHLYDYEDFRNARTHNDIWNCCQLQLINEGTIHEFLRM 704 >gi|9633937|ref|NP_052016.1| gp127L [Rabbit fibroma virus] gi|6578656|gb|AAF18010.1|AF170722_128 gp127L [Rabbit fibroma virus] Length = 445 Score = 41.6 bits (96), Expect = 0.27, Method: Compositional matrix adjust. Identities = 62/256 (24%), Positives = 103/256 (40%), Gaps = 34/256 (13%) Query: 166 IQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPI-----GEQNALHILR 220 IQ L+ L P I+ PV + F +D + PI G + + LR Sbjct: 167 IQKLLTTYLTKFP-SVIKHPYPVQDVYVEDFT----PTLDDVSPIRGITAGNKGGMRKLR 221 Query: 221 KFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFS 280 F K K+ YY E ++ P + S LSP+L G LS ++ + E P+S A + Sbjct: 222 AFLKHKLRYYHEFKNDPTVDACSGLSPWLRYGHLSAQRV---VLETVAYTSTYPESVA-T 277 Query: 281 WLNELIWR----EFYRHLMAFYPSVCMGKPFIPWT---EKIEWNKDSHLLQAWKQGYTGF 333 +L+E++ R + + + Y S+ P+ T + + + + + T Sbjct: 278 FLDEIVVRRELSDNFCYYNKLYDSITSTHPWALRTLDDHRQDLRPYLYDTSSLEHARTHD 337 Query: 334 PIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQL--------LDGDL 385 P+ + A Q+ G MH LRM A +++W E +S LDG Sbjct: 338 PLWNTAQLQMINEGKMHGYLRMYWAK-----KILEWSKTPESALSVCIYLNDKYELDGTD 392 Query: 386 ASNNGGWQWAASTGND 401 + G WA + +D Sbjct: 393 PNGYVGCLWAVAGLHD 408 >gi|328784628|ref|XP_003250474.1| PREDICTED: deoxyribodipyrimidine photo-lyase [Apis mellifera] Length = 480 Score = 41.6 bits (96), Expect = 0.29, Method: Compositional matrix adjust. Identities = 40/160 (25%), Positives = 70/160 (43%), Gaps = 11/160 (6%) Query: 211 GEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDL 270 G +N + L F + ++ Y ++R+ P S LSP+ G++S ++C +K E+ L Sbjct: 242 GYENGIKELENFLQNRLKKYGDERNNPLSNAISNLSPWFHFGMISVQRCILEIK-EYKKL 300 Query: 271 LIKPKSGAFSWLNELIWREFYRHLMAFY-PSVCMGKPFIPWT------EKIEWNKDSHLL 323 K S++ E I R+ FY + + PW + + K + L Sbjct: 301 Y---KKSVESFMEEAIIRKELSDNFCFYNEKYDLIEGAYPWAIETLNKHRKDKRKYIYFL 357 Query: 324 QAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363 + T + +A Q+ TIG MH LRM A +++ Sbjct: 358 NHLENSETHDDLWNACQNQMVTIGKMHGFLRMYWAKKILE 397 >gi|304315052|ref|YP_003850199.1| deoxyribodipyrimidine photo-lyase [Methanothermobacter marburgensis str. Marburg] gi|313104153|sp|P58818|PHR_METTM RecName: Full=Deoxyribodipyrimidine photo-lyase; AltName: Full=DNA photolyase; AltName: Full=Photoreactivating enzyme gi|302588511|gb|ADL58886.1| deoxyribodipyrimidine photo-lyase [Methanothermobacter marburgensis str. Marburg] Length = 444 Score = 41.6 bits (96), Expect = 0.31, Method: Compositional matrix adjust. Identities = 37/162 (22%), Positives = 72/162 (44%), Gaps = 17/162 (10%) Query: 202 QAIDP-MFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCW 260 + ++P +F G A+ + +F EK+ + + R+ P S +SPYL G +SP Sbjct: 206 EELEPSIFSGGASEAIRLFDEFLSEKLACFEKYRNDPVKNCLSNMSPYLHFGHISPL--- 262 Query: 261 NRLKEEFVDLLIKPKSGAFSWLNELI-WREFYRHLMAFYPSVCMGKPFIPWTEK--IEWN 317 ++ + +L ELI RE + + + + + W +K +E Sbjct: 263 ------YLAMKASKTGECPEFLEELIVRRELSMNFVHYSDNYSSIRCLPEWAQKTLMEHA 316 Query: 318 KD----SHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRM 355 +D + L+ +++ T P +AA +++ G MH +RM Sbjct: 317 RDPKEYEYTLREFEEARTHDPYWNAAQKEMVITGKMHGYMRM 358 >gi|227553400|ref|ZP_03983449.1| possible deoxyribodipyrimidine photolyase [Enterococcus faecalis HH22] gi|227177451|gb|EEI58423.1| possible deoxyribodipyrimidine photolyase [Enterococcus faecalis HH22] Length = 178 Score = 41.6 bits (96), Expect = 0.31, Method: Compositional matrix adjust. Identities = 34/134 (25%), Positives = 54/134 (40%), Gaps = 10/134 (7%) Query: 135 SFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIR-----LTGPVT 189 SF D+ L I + Y+V+TP+ N + + P+P + + Sbjct: 41 SFQDAYLHGSEEIKKNDGSKYQVFTPY-----YNKWKEAPKETPIPVSYTAEKIFSACLF 95 Query: 190 PSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYL 249 P + + + + +GE+ A L F +K+ Y +RD P TS LS +L Sbjct: 96 PEEEAAYREQIARIPLTHYSVGEETARRRLNTFIDQKLQSYENKRDFPYQDQTSHLSTFL 155 Query: 250 SIGVLSPRQCWNRL 263 G LS R W L Sbjct: 156 RTGELSIRTIWQEL 169 >gi|188579437|ref|YP_001922882.1| deoxyribodipyrimidine photo-lyase [Methylobacterium populi BJ001] gi|179342935|gb|ACB78347.1| Deoxyribodipyrimidine photo-lyase [Methylobacterium populi BJ001] Length = 476 Score = 41.2 bits (95), Expect = 0.34, Method: Compositional matrix adjust. Identities = 79/381 (20%), Positives = 142/381 (37%), Gaps = 50/381 (13%) Query: 1 MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHF 60 + A S L W+ R N AL A ++ + + V + +AR F Sbjct: 31 LPARDGASYVLYWMGLSQRARFNPALEYAVEEANGRGLPVLVCYGLAEGIPEANARHWAF 90 Query: 61 IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120 + + +V L+++GI + + + ++ + +R Y + VRR Sbjct: 91 LLEGMAEVGPELAKRGIAYVARRQPPVETAL------LYAADAALVICDRNY-LKPVRR- 142 Query: 121 KLLEKRLQHRVICKSFDDSVLLPPGSIL---NHALQMYKVYTPFRKALIQNLVQADLRSL 177 R C+ + H + + R+ L + LV + RS+ Sbjct: 143 --FYADFAARAPCRVVQVEGEVVVPVETASPKHEVAARTLRPKIRRLLPEYLVPLEERSV 200 Query: 178 PVPAIRLTGPVTP--SNIPRFFDY--PFQAIDPM--FPIGEQNALHILRKFCKEKVYYYV 231 A L+ T S++PR Q++ P+ F G A L + + +Y Sbjct: 201 AHRADHLSFESTLDLSDVPRLVASLKADQSVRPVRRFKGGTTQAEATLSHYLDARFNHYA 260 Query: 232 EQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGA-------FSWLNE 284 + R P S +SPYL G +SP V + +K ++ A ++L E Sbjct: 261 QIRGRPEAGAASHMSPYLHYGQISP-----------VAIALKVQAAATGGEDDKAAYLEE 309 Query: 285 LI-WREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSH---------LLQAWKQGYTGFP 334 LI RE + + + P+ + W K D+H + +++G T Sbjct: 310 LIVRRELAMNHIYYEPNYDSYEAAPAWARK---TLDAHRGDPRPYLYTPEQFERGETHDR 366 Query: 335 IIDAAMRQLNTIGWMHNRLRM 355 +AAM ++ G+MHN +RM Sbjct: 367 YWNAAMMEMRETGYMHNHMRM 387 >gi|269122091|ref|YP_003310268.1| DNA photolyase FAD-binding protein [Sebaldella termitidis ATCC 33386] gi|268615969|gb|ACZ10337.1| DNA photolyase FAD-binding protein [Sebaldella termitidis ATCC 33386] Length = 453 Score = 41.2 bits (95), Expect = 0.35, Method: Compositional matrix adjust. Identities = 65/269 (24%), Positives = 108/269 (40%), Gaps = 46/269 (17%) Query: 11 LVWLRNDLRITDNKALYAACH--NSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 + W++ +R + N +L A H N K + V ++ + ++ R +F++ SL Sbjct: 22 IYWMQRSIRSSYNHSLEYAIHLANDLKKNLLVIFCFDRKFSE--MNERSCYFLFESLKDA 79 Query: 69 QKSLSQKGIVFQYHQCSNFDDSI-EWLD-SYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 +K+L +GI F S I E+ S C+ L Y R+ R+++ EK Sbjct: 80 EKNLKDRGIRFIVLDSSPLITKILEYSKRSVCIITDRAYLKYLRKI------REEVGEK- 132 Query: 127 LQHRVICKSFDDSVLLPPGSI------------LNHALQMYK----VYTPFRKALIQNL- 169 + R+I D V + S+ L+ L Y YT + + + Sbjct: 133 VSVRMIQIESDVVVPIEIASLKEEYSARTLRGKLHKVLDFYLNKDFEYTKYEMNYLDEIK 192 Query: 170 VQADLRSLP--VPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKV 227 DL + + ++ + V SN F GE A IL F EK+ Sbjct: 193 TDFDLEKIHEIIESLNIDKTVRKSN--------------YFTGGENTAKKILENFISEKL 238 Query: 228 YYYVEQRDIPAIQGTSQLSPYLSIGVLSP 256 Y + R+ P ++ S LSPYL G +SP Sbjct: 239 EGYSKFRNNPELEYQSNLSPYLHFGNISP 267 >gi|197105770|ref|YP_002131147.1| deoxyribodipyrimidine photolyase - classI [Phenylobacterium zucineum HLK1] gi|196479190|gb|ACG78718.1| deoxyribodipyrimidine photolyase - classI [Phenylobacterium zucineum HLK1] Length = 455 Score = 41.2 bits (95), Expect = 0.36, Method: Compositional matrix adjust. Identities = 40/133 (30%), Positives = 55/133 (41%), Gaps = 13/133 (9%) Query: 230 YVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWRE 289 Y R P S LSPYL G +SP + ++E V SG ++L ELI R Sbjct: 240 YEADRSRPEAGAVSHLSPYLHFGQISPVEIALAVREAGV------VSGVATYLEELIVRR 293 Query: 290 FYRHLMAFYPSVCMGKPFIP-WTEKIEWNKDS----HLL--QAWKQGYTGFPIIDAAMRQ 342 AF +P W + + S HL ++ T +AAM + Sbjct: 294 ELAMNHAFQAPAYDRYEVLPEWARQTLADHASDPRPHLYTRDQFEAAETHDSYWNAAMLE 353 Query: 343 LNTIGWMHNRLRM 355 + G+MHNRLRM Sbjct: 354 MRATGYMHNRLRM 366 >gi|33865778|ref|NP_897337.1| photolyase family protein [Synechococcus sp. WH 8102] gi|33632948|emb|CAE07759.1| photolyase protein family [Synechococcus sp. WH 8102] Length = 495 Score = 41.2 bits (95), Expect = 0.36, Method: Compositional matrix adjust. Identities = 39/157 (24%), Positives = 69/157 (43%), Gaps = 19/157 (12%) Query: 208 FPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGT----SQLSPYLSIGVLSPRQCWNRL 263 +PI + A L F E++ + D + Q L+P L+IG+L+P+Q +R Sbjct: 224 YPIDHKEASRWLDNFLDERLVQFGAYEDAISTQHQVMWHGVLTPMLNIGLLTPQQVLDRT 283 Query: 264 --KEEFVDLLIKPKSGAFSWLNELI-WREFYRHLMAFYPSVCMGKPFIPWTEKIEWN-KD 319 + E D+ + G ++ ++I WREF + + F W +D Sbjct: 284 LARAEVGDVPLNSLEG---FIRQIIGWREFMAAMYRRHGVTMRNGNF--------WEVED 332 Query: 320 SHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMI 356 + +A+ G TG P ID A+ G+ H+ R++ Sbjct: 333 RPIPEAFYTGSTGLPPIDDAISHALDTGYCHHIERLM 369 >gi|464378|sp|P34205|PHR_CARAU RecName: Full=Deoxyribodipyrimidine photo-lyase; AltName: Full=DNA photolyase; AltName: Full=Photoreactivating enzyme gi|222872|dbj|BAA01987.1| DNA photolyase [Carassius auratus] Length = 556 Score = 41.2 bits (95), Expect = 0.38, Method: Compositional matrix adjust. Identities = 40/160 (25%), Positives = 68/160 (42%), Gaps = 12/160 (7%) Query: 211 GEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDL 270 G +++L F +++ + R+ P S LSP++ G LS ++ ++K E Sbjct: 310 GTSGGMNMLESFIDQRLRLFATHRNNPNYDALSHLSPWIHTGQLSAQRVVKQVKRE---- 365 Query: 271 LIKPKSGAFSWLNELIWREFYRHLMAFY-PSVCMGKPFIPWTEKI--EWNKDS----HLL 323 S++ EL+ R FY PS W +K + KDS + Sbjct: 366 -KNASESVASFIEELVVRRELADNFCFYNPSYDNISGAYDWAKKTLQDHAKDSRQYLYTK 424 Query: 324 QAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363 + + T + +AA RQL + G MH LRM A +++ Sbjct: 425 EQLENAKTHDQLWNAAQRQLVSEGKMHGFLRMYWAKKILE 464 >gi|165924275|ref|ZP_02220107.1| deoxyribodipyrimidine photo-lyase (DNA photolyase)(Photoreactivating enzyme) [Coxiella burnetii RSA 334] gi|165916280|gb|EDR34884.1| deoxyribodipyrimidine photo-lyase (DNA photolyase)(Photoreactivating enzyme) [Coxiella burnetii RSA 334] Length = 341 Score = 41.2 bits (95), Expect = 0.40, Method: Compositional matrix adjust. Identities = 50/207 (24%), Positives = 76/207 (36%), Gaps = 27/207 (13%) Query: 211 GEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSP-RQCWNRLKEEFVD 269 GEQ A+ + F ++ Y R+ P + G S LSPY G L+P R W+ + + Sbjct: 126 GEQAAMQVFADFETHRLQSYPADRNNPCMNGQSNLSPYFHFGQLAPQRVAWDIWQSD--- 182 Query: 270 LLIKPKSGAFSWLNEL-IWREFYRHLMAFYPSVCMGKPFIPWTEK--IEWNKDSHL---- 322 + S+L EL I RE + + F W K D L Sbjct: 183 ---TDQESKESYLEELIIRRELSDNYCYYTADYDHTNAFPDWARKSLAAHRLDPRLSVAN 239 Query: 323 LQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQL-- 380 L + T + + R+L G +H LRM A +++W E M+ Sbjct: 240 LHILENASTEDELWNGCQRELTGWGKLHGYLRMYWAK-----KILEWSPSPEEAMANAIF 294 Query: 381 ------LDGDLASNNGGWQWAASTGND 401 LDG + G W+ +D Sbjct: 295 LNDKYSLDGRDPNGYAGIAWSIGGVHD 321 >gi|92429534|gb|ABD93511.2| DNA photolyase protein [Solanum tuberosum] Length = 189 Score = 41.2 bits (95), Expect = 0.41, Method: Compositional matrix adjust. Identities = 49/203 (24%), Positives = 86/203 (42%), Gaps = 32/203 (15%) Query: 13 WLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISAR--------QSHFIYAS 64 W RNDLR+ DN+ L AA HN V+AV+ P R +G S+ ++ F+ S Sbjct: 1 WFRNDLRVHDNECLNAA-HNESMSVLAVYCFDP---RDYGKSSSGFDKTGPYRASFLIES 56 Query: 65 LLQVQKSLSQKG--IVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKL 122 + ++K+L +G +V + + L ++ +R+ +EV+ + Sbjct: 57 VADLRKNLQARGSDLVVRIGKPETV------LVELAKAVGAEAVYAHREVSHDEVKGEDK 110 Query: 123 LEKRLQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKAL----IQNLVQA--DLR 175 ++ ++ + K F S L + QM Y FR+ + ++ ++A L+ Sbjct: 111 IDAVMKDEGLEVKYFWGSTLYHVDDLPFKLEQMPTNYGGFREKVQGLEVRKTIEALDQLK 170 Query: 176 SLPVPAIRLTGPVTPSNIPRFFD 198 LP G V P IP D Sbjct: 171 GLPA-----RGDVEPGEIPSLVD 188 >gi|312899443|ref|ZP_07758773.1| deoxyribodipyrimidine photolyase [Enterococcus faecalis TX0470] gi|311293313|gb|EFQ71869.1| deoxyribodipyrimidine photolyase [Enterococcus faecalis TX0470] Length = 220 Score = 41.2 bits (95), Expect = 0.42, Method: Compositional matrix adjust. Identities = 26/67 (38%), Positives = 40/67 (59%), Gaps = 4/67 (5%) Query: 11 LVWLRNDLRITDNKALYAACHNSDA-KVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69 ++W R DLR+ DNKAL A NS A ++I +F P+Q+ Q SA + F +ASL + Sbjct: 4 VMWFRRDLRLQDNKALAHALQNSAADELILLFQMNPQQFIQE--SANHNAF-FASLASFK 60 Query: 70 KSLSQKG 76 + + Q+ Sbjct: 61 ERIDQEA 67 >gi|302847739|ref|XP_002955403.1| hypothetical protein VOLCADRAFT_119073 [Volvox carteri f. nagariensis] gi|300259245|gb|EFJ43474.1| hypothetical protein VOLCADRAFT_119073 [Volvox carteri f. nagariensis] Length = 128 Score = 40.8 bits (94), Expect = 0.44, Method: Composition-based stats. Identities = 21/42 (50%), Positives = 25/42 (59%), Gaps = 1/42 (2%) Query: 4 TTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATP 45 T S+ L WLR DLR DN+AL AC +DA V+ VF P Sbjct: 65 TQVKSLGLWWLRRDLRTADNEALTGACRQADA-VLPVFCFDP 105 >gi|148239607|ref|YP_001224994.1| deoxyribodipyrimidine photolyase-like protein protein [Synechococcus sp. WH 7803] gi|147848146|emb|CAK23697.1| Deoxyribodipyrimidine photolyase-related protein [Synechococcus sp. WH 7803] Length = 495 Score = 40.8 bits (94), Expect = 0.46, Method: Compositional matrix adjust. Identities = 85/383 (22%), Positives = 147/383 (38%), Gaps = 77/383 (20%) Query: 25 ALYAACHNSDAKVI---AVFIATPEQW-----RQHGISARQSHFIYASLLQVQKSLSQKG 76 A + A H A + + T QW RQ + R S YA L+ Q Sbjct: 13 ADHPALHKGRAVALIEDPLLFGTDPQWPIQVHRQRLLLHRASMTAYAETLRAQGY----- 67 Query: 77 IVF--QYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHRVICK 134 VF ++HQ SN ++ ++ L + + Y + V D LLEKRL+ + + + Sbjct: 68 TVFYRRHHQASNTEEHLQALRASG---------FVSFYLADPV--DDLLEKRLR-QFVAR 115 Query: 135 SFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTP---- 190 S D +L +L A + + + RK + + R + + GP+ Sbjct: 116 SGGDLRILDSPMLLTPASMVEEHFAGGRKPFMAKFYEHQRRRMGLLLDDNGGPLGGQWSF 175 Query: 191 -----SNIPRFFDYPFQ-------AIDPM-------------------FPIGEQNALHIL 219 +P+ P + ID +PI ++A L Sbjct: 176 DADNRKKLPKGISVPSEPCHHGDAEIDQARRELETETLPFIGNWDFFSYPIRHEDADRWL 235 Query: 220 RKFCKEKVYYYVEQRDIPAIQGT----SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPK 275 + F ++ + D + Q S L+P L++G+L+P+Q +R E D I P Sbjct: 236 QIFLDQRFRDFGAYEDAISTQHRVMWHSVLTPMLNVGLLTPQQVIDRTLERAADGDI-PL 294 Query: 276 SGAFSWLNELI-WREFYRHLMAFYPSVCMGKPFIPWTEKIEWN-KDSHLLQAWKQGYTGF 333 + ++ +++ WREF +M V M K W +D + A+ G TG Sbjct: 295 NSLEGFIRQIVGWREFMA-VMYRRHGVAMRKSNF-------WEFEDRPIPDAFYTGTTGL 346 Query: 334 PIIDAAMRQLNTIGWMHNRLRMI 356 P +D A+ G+ H+ R++ Sbjct: 347 PPVDDAIHHALAHGYCHHIERLM 369 >gi|242278435|ref|YP_002990564.1| deoxyribodipyrimidine photolyase [Desulfovibrio salexigens DSM 2638] gi|242121329|gb|ACS79025.1| deoxyribodipyrimidine photolyase [Desulfovibrio salexigens DSM 2638] Length = 445 Score = 40.8 bits (94), Expect = 0.50, Method: Compositional matrix adjust. Identities = 40/153 (26%), Positives = 68/153 (44%), Gaps = 15/153 (9%) Query: 211 GEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDL 270 GE A L +F + Y E+R+ P + TS+LS Y G L+P++ +++ Sbjct: 217 GESAAHAALDEFVTYGLGAYAEKRNDPNAEATSRLSAYYHFGQLAPQRA-------ALEV 269 Query: 271 LIKPKSGAF-SWLNELIW-REFYRHLMAFYPSVCMGKPFIPWTEKI--EWNKDS----HL 322 +P + S+L ELI RE + P+ W +K E + D + Sbjct: 270 AARPTGESVDSYLEELIIRRELSDNFCLHTPNYDSLDAAPEWAQKTLSEHSADRRAYLYS 329 Query: 323 LQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRM 355 + ++Q T + +AA Q+ G+MH +RM Sbjct: 330 YEDFEQARTHSALWNAAQSQMVHSGFMHGYMRM 362 >gi|187234364|gb|ACD01434.1| DNA photolyase II [Chrysodeixis chalcites nucleopolyhedrovirus] gi|195976055|gb|ACG63559.1| DNA photolyase II [Plusia acuta nucleopolyhedrovirus] Length = 243 Score = 40.8 bits (94), Expect = 0.56, Method: Compositional matrix adjust. Identities = 47/168 (27%), Positives = 74/168 (44%), Gaps = 20/168 (11%) Query: 200 PFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQC 259 P I+P G +AL++L +F + + Y R+ P ++ S +SP+ G +S ++ Sbjct: 78 PVDWIEP----GYISALNVLARFIRCNLLKYKMSRNNPVLKTQSNMSPFYHFGQISVQRV 133 Query: 260 WNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMA----FYPS---VCMGKPFIPWTE 312 L ++ K SG S +N+ I F R +A FY S +G P Sbjct: 134 MLHLNSLKIN---KNDSGIDSNINDYIEECFVRRELADNFCFYNSNYDTFLGAPNWAKET 190 Query: 313 KIEWNKDSH-----LLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRM 355 + DS LLQ ++ T + +AA RQL G +H LRM Sbjct: 191 LVIHKSDSRQYIYSLLQ-FEHNQTHDELWNAAQRQLRNEGKIHGYLRM 237 >gi|269839711|ref|YP_003324403.1| deoxyribodipyrimidine photo-lyase [Thermobaculum terrenum ATCC BAA-798] gi|269791441|gb|ACZ43581.1| Deoxyribodipyrimidine photo-lyase [Thermobaculum terrenum ATCC BAA-798] Length = 449 Score = 40.4 bits (93), Expect = 0.59, Method: Compositional matrix adjust. Identities = 44/191 (23%), Positives = 78/191 (40%), Gaps = 33/191 (17%) Query: 200 PFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQC 259 P I P GE+ A L+KF EK+ YY R+ S LSP+L +G +S Sbjct: 188 PACGIRIAHPPGEKAARRHLQKFIDEKLEYYALLRNDVGRDFQSDLSPWLHLGHISSL-- 245 Query: 260 WNRLKEEFVDLLIKP--------------KSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305 R+ + ++ + +P + A+ +N L+ R ++ + C+ Sbjct: 246 --RVALQVIEAVGRPPLLLERAKLAEHSGQPSAYDGMNALLEEMIVRKELS--DNFCLHN 301 Query: 306 PFIPWTEKI-EWNKD------------SHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNR 352 P + EW + ++ LQ W++ T +AA QL +G +H Sbjct: 302 PHYKSLQGAPEWGRQTLEAHREDPREFTYSLQEWEEARTHDRAWNAAQTQLRRVGKIHGY 361 Query: 353 LRMITASFLVK 363 +RM A +++ Sbjct: 362 MRMYWAKKMLE 372 >gi|116750550|ref|YP_847237.1| DNA photolyase, FAD-binding [Syntrophobacter fumaroxidans MPOB] gi|116699614|gb|ABK18802.1| Deoxyribodipyrimidine photo-lyase type II [Syntrophobacter fumaroxidans MPOB] Length = 468 Score = 40.4 bits (93), Expect = 0.60, Method: Compositional matrix adjust. Identities = 41/169 (24%), Positives = 64/169 (37%), Gaps = 19/169 (11%) Query: 198 DYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPR 257 D ++ + G A + F ++ + Y E R+ P S +S YL G +SP Sbjct: 212 DRSVPSVTRYYRGGTSRAKELFETFLRDDIGRYTEDRNQPHAGAVSHMSMYLHFGQISPV 271 Query: 258 QCWNRLKEEFVDLLIKPKSGAFSWLNELIWRE-----FYRHLMAFYPSVCMGKPFIPWTE 312 RL E V + AF L +L+ R F H + C+ + W Sbjct: 272 YLALRLGE--VGRERDTQKAAF--LEQLLVRRELALNFVHHTRNYDSYECLPR----WAR 323 Query: 313 KI--EWNKDSHLLQAWKQGYTGFPIID----AAMRQLNTIGWMHNRLRM 355 + KD + +Q D AAM ++ G+MHN +RM Sbjct: 324 ETLARHRKDRREFRYGRQELENLRTHDEYWNAAMTEMKFTGYMHNHMRM 372 >gi|145353298|ref|XP_001420955.1| predicted protein [Ostreococcus lucimarinus CCE9901] gi|145357465|ref|XP_001422939.1| predicted protein [Ostreococcus lucimarinus CCE9901] gi|144581191|gb|ABO99248.1| predicted protein [Ostreococcus lucimarinus CCE9901] gi|144583183|gb|ABP01298.1| predicted protein [Ostreococcus lucimarinus CCE9901] Length = 477 Score = 40.4 bits (93), Expect = 0.67, Method: Compositional matrix adjust. Identities = 48/170 (28%), Positives = 75/170 (44%), Gaps = 41/170 (24%) Query: 211 GEQNALHIL-----RKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQ-CWNR-- 262 GE+ AL L F +++ Y E+ + + S+LSPYL+ G LSPR+ W Sbjct: 232 GERAALAALLDPNVDSFLPQRLTLYGERNKPTSPRAVSRLSPYLNHGQLSPRRAAWEAAQ 291 Query: 263 ----LKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKI-EWN 317 + +E +D S+L ELI R R L Y C+ P+ + +W Sbjct: 292 LRGIVDDEAID----------SYLEELIVR---RELSDNY---CLFNPYYDSLQGASQWA 335 Query: 318 KDSHLLQA------------WKQGYTGFPIIDAAMRQLNTIGWMHNRLRM 355 +DS L A ++G T + +AA ++L +G MH +RM Sbjct: 336 QDSLSLHARDVREYVYDYKTLERGNTHDELWNAAQKELYHLGRMHGFMRM 385 >gi|310658527|ref|YP_003936248.1| deoxyribodipyrimidine photo-lyase [Clostridium sticklandii DSM 519] gi|308825305|emb|CBH21343.1| Deoxyribodipyrimidine photo-lyase (DNA photolyase) (Photoreactivating enzyme) [Clostridium sticklandii] Length = 447 Score = 40.0 bits (92), Expect = 0.78, Method: Compositional matrix adjust. Identities = 46/165 (27%), Positives = 69/165 (41%), Gaps = 26/165 (15%) Query: 205 DPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLK 264 + ++ G A L+ F + K YY E ++ P + +S LSPYL G +SP + LK Sbjct: 213 ESIYKGGSVEAEKYLKDFIENKAQYYSELKNHPGMNYSSNLSPYLHFGQISP--LYIALK 270 Query: 265 EEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKI--EWNKDS-- 320 + IK K +L ELI R R L Y + K + EKI W DS Sbjct: 271 --IIKSDIKSKK---DFLEELITR---RELAINY--IYYNKNYDSDIEKILPSWAYDSLI 320 Query: 321 ----------HLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRM 355 + L+ + T + A +++ G MH +RM Sbjct: 321 SHQNDLKDYLYSLEELENAKTHDEFWNKAQKEMVITGKMHGYMRM 365 >gi|9633763|ref|NP_051841.1| m127L [Myxoma virus] gi|6523982|gb|AAF15015.1|AF170726_131 m127L [Myxoma virus] gi|170664593|gb|ACB28750.1| m127L [Myxoma virus] gi|170664766|gb|ACB28922.1| m127L [recombinant virus 6918VP60-T2] gi|301134653|gb|ADK63767.1| m127L [Myxoma virus] Length = 445 Score = 40.0 bits (92), Expect = 0.88, Method: Compositional matrix adjust. Identities = 54/207 (26%), Positives = 87/207 (42%), Gaps = 26/207 (12%) Query: 211 GEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDL 270 G + L LR F K + YY ++ P + S LSP+L G LS ++ + + V Sbjct: 212 GTKEGLKTLRAFLKHTLRYYYAFKNDPTARACSGLSPWLHYGHLSAQRV---VLDTVVYA 268 Query: 271 LIKPKSGAFSWLNELIWREFYRHLMAF----YPSVCMGKPFIPWTEKIEWNKDS--HLLQ 324 I P S A ++L+E++ R + Y S+ P+ T E +D+ +L Sbjct: 269 SIYPASVA-AFLDEIVVRRELSDNFCYYNKRYDSITSTHPWALRTLD-EHRRDTRPYLYD 326 Query: 325 AW--KQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQL-- 380 + + T P+ +AA Q+ G MH LRM A +++W E +S Sbjct: 327 TYSLEHARTHDPLWNAAQLQMVREGKMHGYLRMYWAK-----KILEWSETPESALSVCIY 381 Query: 381 ------LDGDLASNNGGWQWAASTGND 401 LDG + G WA + +D Sbjct: 382 LNDKYELDGTDPNGYVGCLWAVAGLHD 408 >gi|87124470|ref|ZP_01080319.1| photolyase protein family protein [Synechococcus sp. RS9917] gi|86168042|gb|EAQ69300.1| photolyase protein family protein [Synechococcus sp. RS9917] Length = 482 Score = 40.0 bits (92), Expect = 0.91, Method: Compositional matrix adjust. Identities = 38/158 (24%), Positives = 72/158 (45%), Gaps = 19/158 (12%) Query: 207 MFPIGEQNALHILRKFCKEKVYYYVEQRDIPA----IQGTSQLSPYLSIGVLSPRQCWNR 262 + PI A L F +++ + D + + S L+P L+IG+L+P+Q +R Sbjct: 210 LVPIDHSGAERWLDAFLAQRLQQFGAYEDAISREHHVLWHSVLTPMLNIGLLTPQQVLDR 269 Query: 263 L--KEEFVDLLIKPKSGAFSWLNELI-WREFYRHLMAFYPSVCMGKPFIPWTEKIEWN-K 318 + E D+ P + ++ ++I WREF + + F W + Sbjct: 270 TLARAEAGDV---PHNSLEGFVRQIIGWREFMALMYRHHGVTLRNGNF--------WGLE 318 Query: 319 DSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMI 356 D + +A+ G TG P IDA ++++ G+ H+ R++ Sbjct: 319 DRPIPEAFSTGDTGLPPIDAVIQRVRRSGYCHHIERLM 356 >gi|193652710|ref|XP_001949151.1| PREDICTED: deoxyribodipyrimidine photo-lyase-like [Acyrthosiphon pisum] Length = 506 Score = 40.0 bits (92), Expect = 0.93, Method: Compositional matrix adjust. Identities = 39/159 (24%), Positives = 68/159 (42%), Gaps = 15/159 (9%) Query: 206 PMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCW---NR 262 P G + + L +F K+++ Y R+ P G S+LSP+L G +S ++C ++ Sbjct: 262 PGLKAGFKAGMSELEQFLKKRLPKYSTDRNNPVKDGLSKLSPWLHFGQISAQRCILEVSK 321 Query: 263 LKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSV--CMGKPFIPWTEKIEWNKDS 320 L +++ D + + A ++ RE + + P G P T E KD Sbjct: 322 LSKQYPDSVAAYREEA------IVRRELSDNFCFYNPKYDKIEGAPNWAQTSLNEHRKDK 375 Query: 321 HLL----QAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRM 355 + + + T + ++A QL G MH LRM Sbjct: 376 RMFVYTREELESSRTHDDLWNSAQIQLVKEGKMHGFLRM 414 >gi|226495065|ref|NP_001144536.1| hypothetical protein LOC100277533 [Zea mays] gi|195643560|gb|ACG41248.1| hypothetical protein [Zea mays] Length = 131 Score = 39.7 bits (91), Expect = 0.98, Method: Compositional matrix adjust. Identities = 33/104 (31%), Positives = 47/104 (45%), Gaps = 8/104 (7%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 +VW R DLRI DN AL AA V+ +FI P + Q+ ++ SL + K Sbjct: 8 VVWFRRDLRIQDNPALAAAAKG--GSVLPIFIWCPSDYGQYYPGRCSRWWLKQSLAHLGK 65 Query: 71 SLSQKG--IVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQY 112 SL G +V + S +E + S T++ YNR Y Sbjct: 66 SLELLGCPLVLIRAEDSTLAALLECVRSI----SATRVVYNRLY 105 >gi|325115796|emb|CBZ51351.1| hypothetical protein NCLIV_044160 [Neospora caninum Liverpool] Length = 636 Score = 39.7 bits (91), Expect = 1.1, Method: Compositional matrix adjust. Identities = 46/175 (26%), Positives = 81/175 (46%), Gaps = 18/175 (10%) Query: 205 DPMFPI-----GEQNALHILRKFCK-EKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQ 258 DP P+ G + AL +L+ F + + Y + R+ P S LSPY+ G ++ ++ Sbjct: 285 DPPEPLDSWKPGTKAALRLLQSFATPQNIAKYGKARNDPLADCQSDLSPYIHFGHIAVQR 344 Query: 259 CW---NRLKEEFVDLLIKPKSGAFSWLNELIWR-EFYRHLMAFYPSVCMGKPFIPWTEKI 314 C ++LK+ D + G ++++E++ R + + + F P K W ++ Sbjct: 345 CLMEVSKLKDTTGDRAV--HEGVRAFIDEVVVRSQLSDNFVFFNPHYDDIKGAPDWAKQT 402 Query: 315 --EWNKDSHLLQ----AWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363 + KD Q A ++G T + +AA QL G MH LRM A L++ Sbjct: 403 LEKHAKDKREPQYEFTALEEGKTYDSLWNAAQLQLVRDGKMHGYLRMYWAKKLLE 457 >gi|32475397|ref|NP_868391.1| deoxyribodipyrimidine photolyase [Rhodopirellula baltica SH 1] gi|32445938|emb|CAD78669.1| deoxyribodipyrimidine photolyase [Rhodopirellula baltica SH 1] Length = 507 Score = 39.7 bits (91), Expect = 1.1, Method: Compositional matrix adjust. Identities = 46/169 (27%), Positives = 68/169 (40%), Gaps = 21/169 (12%) Query: 209 PIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEE-- 266 P G A ++F +K+ Y + R+ P T+ LSP+L G +S + + + E Sbjct: 252 PGGTVEATRRWQEFLNKKLSRYNDDRNHPDEHATTGLSPHLHFGHISAHEMVSSILEHEG 311 Query: 267 -FVDLLIKPKSGAFSWLNE-----------LIWREFYRHLMAFYPSVCMGKPFIP-WTEK 313 D KP S+ N L WRE + P +P W +K Sbjct: 312 WSADQTSKPNGKNHSFWNVGENAEALLDQLLTWREIGFNWSFQNPDTYDSLESLPDWAQK 371 Query: 314 I--EWNKDS--HL--LQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMI 356 E D HL L ++ T I +AA R+L G MHN +RM+ Sbjct: 372 TLNETRDDERPHLYTLAEFENAETHDEIWNAAQRELVETGEMHNYMRML 420 >gi|255076989|ref|XP_002502150.1| predicted protein [Micromonas sp. RCC299] gi|226517415|gb|ACO63408.1| predicted protein [Micromonas sp. RCC299] Length = 645 Score = 39.7 bits (91), Expect = 1.2, Method: Compositional matrix adjust. Identities = 40/158 (25%), Positives = 72/158 (45%), Gaps = 20/158 (12%) Query: 211 GEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDL 270 GE+ AL L +F + K+ Y R+ P+++ S LSP++ G +S +R + + Sbjct: 358 GEREALRKLDRFLESKLTNYASSRNDPSLRLQSHLSPHIHYGQISVVYVAHRAR-KVAAA 416 Query: 271 LIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKI-EWNKDS--------- 320 + + +L+EL+ R R L + C+ P E + EW + + Sbjct: 417 RPELRRSVDVFLDELVVR---RELAINF---CLNNPAYDAYEGVPEWARRTLATHATDHR 470 Query: 321 ---HLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRM 355 + L+ +++ T + +AA R+L G HN LRM Sbjct: 471 SFVYTLEQFERCATHDALWNAAQRELVVSGKQHNYLRM 508 >gi|327342140|gb|AEA50857.1| cry1-1 [Populus tremula] Length = 104 Score = 39.3 bits (90), Expect = 1.4, Method: Composition-based stats. Identities = 32/103 (31%), Positives = 45/103 (43%), Gaps = 7/103 (6%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSH-FIYASLLQVQ 69 +VW R DLR+ DN AL A V+AVF+ PE+ H R S ++ SL + Sbjct: 8 IVWFRRDLRVEDNPALAAGVRA--GAVVAVFVWAPEE-EGHYYPGRVSRWWLKQSLGHLD 64 Query: 70 KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQY 112 SL G + + DS+ L T+L +N Y Sbjct: 65 SSLRSLGTSLVTKRST---DSVSTLLEVVKSTGATQLLFNHLY 104 >gi|302547631|ref|ZP_07299973.1| deoxyribodipyrimidine photolyase [Streptomyces hygroscopicus ATCC 53653] gi|302465249|gb|EFL28342.1| deoxyribodipyrimidine photolyase [Streptomyces himastatinicus ATCC 53653] Length = 502 Score = 39.3 bits (90), Expect = 1.5, Method: Compositional matrix adjust. Identities = 27/92 (29%), Positives = 46/92 (50%), Gaps = 6/92 (6%) Query: 208 FPIGEQNALHILRKFCKEKVYYYVEQRDI----PAIQGTSQLSPYLSIGVLSPRQCWNRL 263 FP + AL LR F ++ + D + SQLS L++G+L P +C +R Sbjct: 221 FPATRREALASLRHFVTHRLPCFGPYEDAMLAADPVMCHSQLSAPLNLGLLHPAECVDRA 280 Query: 264 KEEFVDLLIKPKSGAFSWLNELI-WREFYRHL 294 + + D + P +GA ++ ++ WRE+ HL Sbjct: 281 ERAWRDGAV-PLAGAEGFVRQIAGWREYVWHL 311 >gi|260436163|ref|ZP_05790133.1| photolyase protein family protein [Synechococcus sp. WH 8109] gi|260414037|gb|EEX07333.1| photolyase protein family protein [Synechococcus sp. WH 8109] Length = 498 Score = 39.3 bits (90), Expect = 1.6, Method: Compositional matrix adjust. Identities = 40/157 (25%), Positives = 69/157 (43%), Gaps = 19/157 (12%) Query: 208 FPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGT----SQLSPYLSIGVLSPRQCWNRL 263 +P+ +A L +F ++++ + D + Q S L+P L+IG+L+P Q +R Sbjct: 227 YPVTHGDAARWLDQFLEQRLRQFGAYEDAISTQHQVMWHSVLTPMLNIGLLTPLQVLDRT 286 Query: 264 KE--EFVDLLIKPKSGAFSWLNELI-WREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDS 320 E E D+ + G +L ++I WREF + + F W D Sbjct: 287 LERAEAGDIPLNSLEG---FLRQIIGWREFMAAIYRRHGVEMRNGNF--------WGFDD 335 Query: 321 H-LLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMI 356 + A+ TG P ID A+R G+ H+ R++ Sbjct: 336 RPIPSAFYTASTGLPPIDDAIRHALETGYCHHIERLM 372 >gi|325285638|ref|YP_004261428.1| deoxyribodipyrimidine photolyase-like protein [Cellulophaga lytica DSM 7489] gi|324321092|gb|ADY28557.1| deoxyribodipyrimidine photolyase-related protein [Cellulophaga lytica DSM 7489] Length = 494 Score = 38.9 bits (89), Expect = 1.7, Method: Compositional matrix adjust. Identities = 36/150 (24%), Positives = 72/150 (48%), Gaps = 16/150 (10%) Query: 238 AIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELI-WREFYRHLMA 296 +I S L+P L++G+++P++ ++ ++ P + ++ ++I WREF R + Sbjct: 258 SILNHSVLTPMLNVGLITPKEIIDKAL-DYAKTNNVPINSTEGFVRQIIGWREFIRGMYI 316 Query: 297 FYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLR-M 355 + + +T KI ++ G TG P ID +++L G+ H+ R M Sbjct: 317 TRGAEERTTNYWKFTRKIP--------ASFYNGTTGIPPIDQTIKKLLQTGYCHHIERLM 368 Query: 356 ITASFLVKDLLVDWRIGEEY--FMSQLLDG 383 + ++F+ LL ++ E Y FM +D Sbjct: 369 VLSNFM---LLCEFNPDEVYQWFMELFIDS 395 >gi|40556144|ref|NP_955229.1| CNPV206 putative photolyase [Canarypox virus] gi|40233969|gb|AAR83552.1| CNPV206 putative photolyase [Canarypox virus] Length = 472 Score = 38.9 bits (89), Expect = 1.8, Method: Compositional matrix adjust. Identities = 49/199 (24%), Positives = 79/199 (39%), Gaps = 13/199 (6%) Query: 166 IQNLVQADLRSLPVPAIRLTGPVTPS---NIPRFFDYPFQAIDPMFPIGEQNALHILRKF 222 I ++ L PV GP + S N FD + P G + A +L F Sbjct: 178 INGMLDTYLTEFPVITKHPYGPFSVSIANNKGVEFDDTVHPVSWAVP-GSKAAFKVLDDF 236 Query: 223 CKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWL 282 K ++ Y + P + S LSP+L G +S ++ + E I PKS + Sbjct: 237 LKNRLAAYESDHNNPTCEALSNLSPWLHFGHISAQRV---VLETLKYKSIHPKSVSVFLD 293 Query: 283 NELIWREFYRHLMAF---YPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQ---GYTGFPII 336 +I RE + + Y S+ + T + N + + KQ T P+ Sbjct: 294 EIIIRRELADNFCYYNKRYDSIESTHSWARETLEAHVNDRRKYIYSLKQLERAETHDPLW 353 Query: 337 DAAMRQLNTIGWMHNRLRM 355 ++A Q+ +G MH+ LRM Sbjct: 354 NSAQIQMVRLGKMHSFLRM 372 >gi|88808546|ref|ZP_01124056.1| photolyase protein family protein [Synechococcus sp. WH 7805] gi|88787534|gb|EAR18691.1| photolyase protein family protein [Synechococcus sp. WH 7805] Length = 495 Score = 38.9 bits (89), Expect = 2.0, Method: Compositional matrix adjust. Identities = 51/206 (24%), Positives = 88/206 (42%), Gaps = 33/206 (16%) Query: 208 FPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGT----SQLSPYLSIGVLSPRQCWNRL 263 +PI ++A L+ F + ++ + D + Q S L+P L+IG+L+P+Q +R Sbjct: 224 YPIRHEDADRWLQTFLEYRLRDFGAYEDAISTQHRVMWHSVLTPMLNIGLLTPQQILDRT 283 Query: 264 KEEFVDLLIKPKSGAFSWLNELI-WREFYRHLMAFYPSVCMGKPFIPWTEKIEWN-KDSH 321 E D I P + ++ +++ WREF +V + + W +D Sbjct: 284 LERAADGDI-PLNSLEGFIRQIVGWREFM--------AVMYRRHGVAMRNSNFWKFEDRP 334 Query: 322 LLQAWKQGYTGFPIIDAAMRQLNTIGWMHN--RLRMITASFLV------------KDLLV 367 + A+ TG P ID A+ + G+ H+ RL ++ L+ +L V Sbjct: 335 IPDAFYTATTGLPPIDDAIGHALSSGYCHHIERLMLLGNVMLLCGFHPQRVYQWFMELFV 394 Query: 368 ---DWRIGEEYF-MSQLLDGDLASNN 389 DW + F MSQ DG L + Sbjct: 395 DAYDWVMVPNVFGMSQFADGGLFTTK 420 >gi|78184690|ref|YP_377125.1| photolyase family protein [Synechococcus sp. CC9902] gi|78168984|gb|ABB26081.1| photolyase protein family [Synechococcus sp. CC9902] Length = 505 Score = 38.9 bits (89), Expect = 2.0, Method: Compositional matrix adjust. Identities = 48/202 (23%), Positives = 84/202 (41%), Gaps = 33/202 (16%) Query: 208 FPIGEQNALHILRKFCKEKVYYYVEQRDIPA----IQGTSQLSPYLSIGVLSPRQCWNRL 263 +P+ Q A L +F ++ + D + + L+P L+IG+L+PRQ +R Sbjct: 234 YPVNHQQAALWLDQFLDDRFKDFGAYEDAISRYHRVMWHGVLTPMLNIGLLTPRQILDRT 293 Query: 264 KEEFVDLLIKPKSGAFSWLNELI-WREFYRHLMAFYPSVCMGKPFIPWTEKIEWN-KDSH 321 E I P + ++ ++I WREF +V + + W +D Sbjct: 294 LEYSKKNDI-PLNSLEGFIRQIIGWREFM--------AVMYRRHGVEMRNSNFWEFEDRP 344 Query: 322 LLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK--------------DLLV 367 + A+ G TG P ID A++ G+ H+ R++ +++ +L V Sbjct: 345 IPDAFYTGNTGLPPIDDAIKHALQTGYCHHIERLMLVGNIMQLCGFHPNRVYVWFMELFV 404 Query: 368 ---DW-RIGEEYFMSQLLDGDL 385 DW + Y MSQ DG + Sbjct: 405 DAYDWVMVPNVYGMSQFADGGI 426 >gi|312091466|ref|XP_003146989.1| DNA photolyase 1 [Loa loa] gi|307757849|gb|EFO17083.1| DNA photolyase 1 [Loa loa] Length = 261 Score = 38.9 bits (89), Expect = 2.2, Method: Compositional matrix adjust. Identities = 22/69 (31%), Positives = 36/69 (52%), Gaps = 5/69 (7%) Query: 230 YVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWRE 289 Y ++R+IP + S LSPY+ G+L+P N +K+ PKS ++L E++ R Sbjct: 12 YDKERNIPNGKKQSLLSPYMHFGMLNPITIVNEVKQSKA-----PKSAKDAFLEEMVVRR 66 Query: 290 FYRHLMAFY 298 H +Y Sbjct: 67 ELAHNFVYY 75 >gi|283778509|ref|YP_003369264.1| DNA photolyase FAD-binding protein [Pirellula staleyi DSM 6068] gi|283436962|gb|ADB15404.1| DNA photolyase FAD-binding protein [Pirellula staleyi DSM 6068] Length = 502 Score = 38.5 bits (88), Expect = 2.2, Method: Compositional matrix adjust. Identities = 42/167 (25%), Positives = 69/167 (41%), Gaps = 22/167 (13%) Query: 211 GEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLS----PRQCWNRLKEE 266 G +A +L +F ++ Y E R+ P S LSP+L G +S R+ R Sbjct: 243 GAASAARVLERFLDSRLSRYGE-RNEPDANAASGLSPWLHFGHVSVHDIARRALARESWS 301 Query: 267 FVDLLIKPKSGAFSW----------LNELI-WREFYRHLMAFYPSVCMGKPFIPWTEK-- 313 L K A +W L+ELI WRE + + + + W +K Sbjct: 302 HAKLSAKTDGKAGAWWGVSAACEGFLDELITWREIGFNFCSRNDNFDQDESLPTWVQKTL 361 Query: 314 ----IEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMI 356 ++ + + L ++ T + +AA RQL G +HN +RM+ Sbjct: 362 DKHAVDPRPNLYTLDQFESSTTHDLLWNAAQRQLVREGRIHNYMRML 408 >gi|302336786|ref|YP_003801992.1| DNA photolyase FAD-binding protein [Spirochaeta smaragdinae DSM 11293] gi|301633971|gb|ADK79398.1| DNA photolyase FAD-binding protein [Spirochaeta smaragdinae DSM 11293] Length = 453 Score = 38.5 bits (88), Expect = 2.4, Method: Compositional matrix adjust. Identities = 39/131 (29%), Positives = 55/131 (41%), Gaps = 14/131 (10%) Query: 232 EQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFY 291 E+R+ P+ +G S +SPYL G +S + R E P G ++L ELI R Sbjct: 244 EERNDPSKEGLSCMSPYLHYGQISALEIALRASEH-------PGPGCEAFLEELIIRREL 296 Query: 292 RHLMAFYPSVCMGKPFIP-WT----EKIEWNKDSHLLQ--AWKQGYTGFPIIDAAMRQLN 344 FY +P W E E +K L ++ T P +AA R+L Sbjct: 297 AFNFVFYNRFYDSFEALPRWAREDLEAHEGDKREVLYDDAQLEEAKTHDPYWNAAQRELT 356 Query: 345 TIGWMHNRLRM 355 G MH +RM Sbjct: 357 HKGKMHGYMRM 367 >gi|156095570|ref|XP_001613820.1| deoxyribodipyrimidine photolyase [Plasmodium vivax SaI-1] gi|148802694|gb|EDL44093.1| deoxyribodipyrimidine photolyase, putative [Plasmodium vivax] Length = 973 Score = 38.5 bits (88), Expect = 2.5, Method: Compositional matrix adjust. Identities = 22/79 (27%), Positives = 43/79 (54%), Gaps = 1/79 (1%) Query: 212 EQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRL-KEEFVDL 270 E+ A +L FC++ + Y +R+ P + L PY+++GV+S ++C + K + + Sbjct: 693 EKKAQELLSHFCRQVLDKYNVKRNDPNSDAATVLLPYVNMGVISAQRCILEVHKHAYSNP 752 Query: 271 LIKPKSGAFSWLNELIWRE 289 I SG S+ ++ I R+ Sbjct: 753 SINAVSGKESFTDDFIMRK 771 >gi|116070558|ref|ZP_01467827.1| photolyase protein family [Synechococcus sp. BL107] gi|116065963|gb|EAU71720.1| photolyase protein family [Synechococcus sp. BL107] Length = 495 Score = 38.5 bits (88), Expect = 2.5, Method: Compositional matrix adjust. Identities = 48/202 (23%), Positives = 84/202 (41%), Gaps = 33/202 (16%) Query: 208 FPIGEQNALHILRKFCKEKVYYYVEQRDIPA----IQGTSQLSPYLSIGVLSPRQCWNRL 263 +PI + A L +F ++ + D + + L+P L+IG+L+PRQ +R Sbjct: 224 YPINHEQAALWLDQFLDDRFKDFGAYEDAISRHHRVMWHGVLTPMLNIGLLTPRQILDR- 282 Query: 264 KEEFVDLLIKPKSGAFSWLNELI-WREFYRHLMAFYPSVCMGKPFIPWTEKIEWN-KDSH 321 E D P + ++ ++I WREF +V + + W +D Sbjct: 283 TLECADKNNIPLNSLEGFIRQIIGWREFM--------AVMYRRHGVEMRNGNFWQFEDRP 334 Query: 322 LLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK--------------DLLV 367 + A+ G TG P ID A++ G+ H+ R++ +++ +L V Sbjct: 335 IPDAFYTGTTGLPPIDDAIKHALQTGYCHHIERLMLLGNMMQLCGFHPNRVYVWFMELFV 394 Query: 368 ---DW-RIGEEYFMSQLLDGDL 385 DW + Y MSQ DG + Sbjct: 395 DAYDWVMVPNVYGMSQFADGGI 416 >gi|33330687|gb|AAQ10672.1| type II CPD photolyase [Stellaria longipes] Length = 499 Score = 38.1 bits (87), Expect = 3.0, Method: Compositional matrix adjust. Identities = 45/163 (27%), Positives = 69/163 (42%), Gaps = 28/163 (17%) Query: 211 GEQNALHILRK----FCKEKVYYYVEQRDIP-AIQGTSQLSPYLSIGVLSPRQCW----- 260 GE AL +L F +++ Y R+IP + S LSPYL G +S ++C Sbjct: 233 GETAALEVLMGEKDGFLTKRLKKYGTDRNIPLKPRALSGLSPYLHFGQISAQRCALEARQ 292 Query: 261 -NRLKEEFVDLLIKPKSGAFSWLNELI-WREFYRHLMAFYPSVCMGKPFIPWTEKI---- 314 +L E VD ++L ELI RE + + P K W K Sbjct: 293 VRKLSPESVD----------TFLEELIVRRELADNFCYYQPHYDSIKGAWDWARKTLMDH 342 Query: 315 EWNKDSHLL--QAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRM 355 +K HL + ++ T P+ +A+ ++ T G MH +RM Sbjct: 343 ASDKREHLYTREQLEKAQTADPLWNASQMEMVTFGKMHGFMRM 385 >gi|195154062|ref|XP_002017941.1| GL17032 [Drosophila persimilis] gi|194113737|gb|EDW35780.1| GL17032 [Drosophila persimilis] Length = 540 Score = 38.1 bits (87), Expect = 3.0, Method: Compositional matrix adjust. Identities = 37/160 (23%), Positives = 74/160 (46%), Gaps = 11/160 (6%) Query: 211 GEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDL 270 G + A L +FC ++ + ++R+ P + S LSP+L G +S ++C ++ Sbjct: 302 GYKAACLQLYEFCSRRLGKFNDKRNDPTVDALSGLSPWLHFGQISAQRCVLEVQR----Y 357 Query: 271 LIKPKSGAFSWLNE-LIWREFYRHLMAFYPSVCMGKPFIPWT-EKIEWNKDS-----HLL 323 + K+ A ++ E ++ RE + + + K PW + +E ++ + L Sbjct: 358 RSQHKASADAYCEEAIVRRELADNFCYYNENYDSLKGLSPWAYQSLEAHRKDKRDPCYTL 417 Query: 324 QAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363 + +Q T + ++A QL G MH LRM A +++ Sbjct: 418 EELEQSLTYDDLWNSAQLQLVREGKMHGFLRMYWAKKILE 457 >gi|9964339|ref|NP_064807.1| putative CPD photolyase [Amsacta moorei entomopoxvirus 'L'] gi|9944548|gb|AAG02731.1|AF250284_25 AMV025 [Amsacta moorei entomopoxvirus 'L'] Length = 453 Score = 38.1 bits (87), Expect = 3.1, Method: Compositional matrix adjust. Identities = 19/58 (32%), Positives = 35/58 (60%), Gaps = 3/58 (5%) Query: 211 GEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQC---WNRLKE 265 G N ++ + F K K+ Y ++++ P + TS LSP+L G++S ++C N+LK+ Sbjct: 215 GYTNGINRMNNFFKNKINTYKDKKNNPNYENTSILSPWLHCGMISAQRCVLEANKLKK 272 >gi|327538009|gb|EGF24703.1| deoxyribodipyrimidine photolyase [Rhodopirellula baltica WH47] Length = 479 Score = 38.1 bits (87), Expect = 3.3, Method: Compositional matrix adjust. Identities = 46/169 (27%), Positives = 71/169 (42%), Gaps = 21/169 (12%) Query: 209 PIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEE-- 266 P G A ++F +K+ Y + R+ P T+ LSP+L G +S + + L + Sbjct: 224 PGGTAEASRRWQEFLNKKLSRYNDDRNHPDEHATTGLSPHLHFGHISAHEMVSSLLDHEG 283 Query: 267 -FVDLLIKPKS----------GAFSWLNELI-WREFYRHLMAFYPSVCMGKPFIP-WTEK 313 D KP A + L++L+ WRE + P +P W +K Sbjct: 284 WSADQTSKPNGKNHGFWNVGENAEALLDQLLTWREIGFNWSFQNPDTYDSLESLPDWAQK 343 Query: 314 I--EWNKDS--HL--LQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMI 356 E D HL L ++ T I +AA R+L G MHN +RM+ Sbjct: 344 TLNETRDDERPHLYTLAEFENAETHDEIWNAAQRELVETGEMHNYMRML 392 >gi|198458346|ref|XP_001361001.2| GA10839 [Drosophila pseudoobscura pseudoobscura] gi|198136308|gb|EAL25577.3| GA10839 [Drosophila pseudoobscura pseudoobscura] Length = 540 Score = 38.1 bits (87), Expect = 3.3, Method: Compositional matrix adjust. Identities = 37/160 (23%), Positives = 74/160 (46%), Gaps = 11/160 (6%) Query: 211 GEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDL 270 G + A L +FC ++ + ++R+ P + S LSP+L G +S ++C ++ Sbjct: 302 GYKAACLQLYEFCSRRLGKFNDKRNDPTVDALSGLSPWLHFGQISAQRCVLEVQR----Y 357 Query: 271 LIKPKSGAFSWLNE-LIWREFYRHLMAFYPSVCMGKPFIPWT-EKIEWNKDS-----HLL 323 + K+ A ++ E ++ RE + + + K PW + +E ++ + L Sbjct: 358 RSQHKASADAYCEEAIVRRELADNFCYYNENYDSLKGLSPWAYQSLEAHRKDKRDPCYTL 417 Query: 324 QAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363 + +Q T + ++A QL G MH LRM A +++ Sbjct: 418 EELEQSLTYDDLWNSAQLQLVREGKMHGFLRMYWAKKILE 457 >gi|195026713|ref|XP_001986318.1| GH21292 [Drosophila grimshawi] gi|193902318|gb|EDW01185.1| GH21292 [Drosophila grimshawi] Length = 530 Score = 38.1 bits (87), Expect = 3.4, Method: Compositional matrix adjust. Identities = 35/143 (24%), Positives = 61/143 (42%), Gaps = 9/143 (6%) Query: 219 LRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGA 278 L +FC ++ Y+ E+R+ P S LSP+L G +S ++C L+ + + K + A Sbjct: 299 LYEFCTRRLRYFDEKRNDPTADALSGLSPWLHFGQISAQRC--ALEVQRYTSMHKASADA 356 Query: 279 FSWLNELIWREFYRHLMAFYPSVCMGKPFIPWT------EKIEWNKDSHLLQAWKQGYTG 332 F ++ RE + + K W + + + L+ +Q T Sbjct: 357 FC-EEAIVRRELADNFCYYNEHYDSLKGLHDWAYQTLQEHRTDERNPCYSLEELEQSRTY 415 Query: 333 FPIIDAAMRQLNTIGWMHNRLRM 355 + ++A QL G MH LRM Sbjct: 416 DDLWNSAQLQLVKEGKMHGFLRM 438 >gi|262373183|ref|ZP_06066462.1| photolyase [Acinetobacter junii SH205] gi|262313208|gb|EEY94293.1| photolyase [Acinetobacter junii SH205] Length = 509 Score = 37.7 bits (86), Expect = 3.9, Method: Compositional matrix adjust. Identities = 28/99 (28%), Positives = 53/99 (53%), Gaps = 12/99 (12%) Query: 213 QNALHILRKFCKEKVYYYVEQRDIPAIQGT-----SQLSPYLSIGVLSPRQCWNRLKEEF 267 Q AL L+ F ++ ++ + +D + G S LSPYL+ G+LSP++ + ++ + Sbjct: 232 QQALEALQYFIDYQLIHFGQYQD-AMVSGKDYLFHSLLSPYLNCGLLSPKEVCDAAQQAY 290 Query: 268 VDLLIKPKSGAFSWLNELI-WREFYRHL----MAFYPSV 301 D + P + A ++ +++ WREF R + M YP + Sbjct: 291 FDHHV-PLNAAEGFIRQILGWREFIRGIYWLKMPTYPDL 328 >gi|24215349|ref|NP_712830.1| deoxyribodipyrimidine photolyase [Leptospira interrogans serovar Lai str. 56601] gi|45657217|ref|YP_001303.1| deoxyribodipyrimidine photolyase [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] gi|24196458|gb|AAN49848.1| deoxyribodipyrimidine photolyase [Leptospira interrogans serovar Lai str. 56601] gi|45600455|gb|AAS69940.1| deoxyribodipyrimidine photolyase [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] Length = 516 Score = 37.7 bits (86), Expect = 4.3, Method: Compositional matrix adjust. Identities = 64/235 (27%), Positives = 102/235 (43%), Gaps = 36/235 (15%) Query: 191 SNIPRFFDYPFQAIDPM--FPIGEQNALHILRKFCKEKVYYYVEQRD---IPAIQGTSQL 245 S I + ++ FQ I P+ G + + +L+KF K + Y E R P +S L Sbjct: 222 SEICKKCNFNFQNIPPVPGKKGGREEGIKLLQKFLKRGLSGYAELRSNPKPPEESYSSFL 281 Query: 246 SPYLSIGVLSPRQC------WNRLKEEFVDLLIKP-----KSGAF-------SWLNELI- 286 SPY+ G +S + WN L + +I P K G F S+L+ELI Sbjct: 282 SPYIHFGHISQEEIVSEVLNWN-LDGSWTPGVIIPENKNRKEGYFHPDPNVNSFLDELIT 340 Query: 287 WREFYRHLMAFYPSVCMGKPFIP-WTEK-IEWNKDS-----HLLQAWKQGYTGFPIIDAA 339 WR+ + PS +P W +K ++++K+ + + + T I +AA Sbjct: 341 WRDVGFLMFWKKPSFRKDLSILPDWIQKNLDFHKNDVRPYIYTKEQLENSKTHDVIWNAA 400 Query: 340 MRQLNTIGWMHNRLRMITASFLVK---DLLVDWRIGEEYFMSQLLDG-DLASNNG 390 ++L G M N LRM+ +++ D + I EE+ DG D S NG Sbjct: 401 QKELVLSGCMQNYLRMLWGKKVIEWSPDYQTAFEILEEFNNKYAYDGRDPNSYNG 455 >gi|168053729|ref|XP_001779287.1| PHR2b AtPHR2-like CDP DNA photolyase [Physcomitrella patens subsp. patens] gi|162669299|gb|EDQ55889.1| PHR2b AtPHR2-like CDP DNA photolyase [Physcomitrella patens subsp. patens] Length = 435 Score = 37.7 bits (86), Expect = 4.3, Method: Compositional matrix adjust. Identities = 19/73 (26%), Positives = 38/73 (52%), Gaps = 6/73 (8%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQS-----HFIYA 63 +VW RNDLR+ DN+AL +A +S ++ V+ P + + ++ F++ Sbjct: 55 ASIVWFRNDLRLHDNEALVSASRDS-LSILPVYCFDPRDYGNSSLGIDKNGPYRVKFLFE 113 Query: 64 SLLQVQKSLSQKG 76 + ++ SL ++G Sbjct: 114 CVANLRSSLRERG 126 >gi|241958274|ref|XP_002421856.1| conserved hypothetical protein [Candida dubliniensis CD36] gi|223645201|emb|CAX39800.1| conserved hypothetical protein [Candida dubliniensis CD36] Length = 1910 Score = 37.7 bits (86), Expect = 4.5, Method: Composition-based stats. Identities = 20/59 (33%), Positives = 36/59 (61%), Gaps = 3/59 (5%) Query: 71 SLSQKGIVFQYH-QCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128 S+S GI+ + + DD I+W+DS L+ R +L +++ E+NE+ D+L+ K+ Q Sbjct: 78 SISNTGILSNTKFKAKDADDVIDWIDS--LKSRYEQLIIHQKNELNEITNDELMRKQQQ 134 >gi|217074548|gb|ACJ85634.1| unknown [Medicago truncatula] Length = 235 Score = 37.7 bits (86), Expect = 4.7, Method: Compositional matrix adjust. Identities = 21/71 (29%), Positives = 37/71 (52%), Gaps = 6/71 (8%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHG-----ISARQSHFIYASL 65 +VW RNDLR+ DN+AL A +N V+ V+ P + + ++ F+ S+ Sbjct: 121 IVWFRNDLRVHDNEALNTA-NNESISVLPVYCFDPADYGKSSSGFDKTGPYRASFLIESI 179 Query: 66 LQVQKSLSQKG 76 ++K+L +G Sbjct: 180 SDLRKNLKARG 190 >gi|218506351|ref|ZP_03504229.1| deoxyribodipyrimidine photo-lyase protein [Rhizobium etli Brasil 5] Length = 57 Score = 37.4 bits (85), Expect = 5.1, Method: Composition-based stats. Identities = 18/36 (50%), Positives = 24/36 (66%), Gaps = 1/36 (2%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPE 46 ++W R DLR+ DNKAL AA H S +I ++I PE Sbjct: 10 ILWFRKDLRLDDNKALNAA-HFSGRPIICLYIREPE 44 >gi|297521221|ref|ZP_06939607.1| deoxyribodipyrimidine photolyase [Escherichia coli OP50] Length = 28 Score = 37.4 bits (85), Expect = 6.3, Method: Composition-based stats. Identities = 16/27 (59%), Positives = 18/27 (66%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNS 33 M HLVW R DLR+ DN AL AC +S Sbjct: 1 MITHLVWFRQDLRLHDNLALAGACRHS 27 >gi|320102273|ref|YP_004177864.1| DNA photolyase FAD-binding protein [Isosphaera pallida ATCC 43644] gi|319749555|gb|ADV61315.1| DNA photolyase FAD-binding protein [Isosphaera pallida ATCC 43644] Length = 486 Score = 37.0 bits (84), Expect = 6.5, Method: Compositional matrix adjust. Identities = 47/186 (25%), Positives = 82/186 (44%), Gaps = 14/186 (7%) Query: 206 PMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKE 265 P +P G + A L++F +++ Y + R+ P TS+LS +L G +SP +++ Sbjct: 233 PNYPGGTREAERRLQRFVAQRLARYGKDRNEPIPYMTSELSAHLHFGHISPLTIALAVQK 292 Query: 266 EFVDLLIK--PKSGAFSWLNELI-WREFYRHLMAFYPS--VCMGKPFIPWTEKIEWNKDS 320 E + + K+ S+L E+I RE + +A P G P + D Sbjct: 293 EAEEAGVAAETKASVESYLEEMIVRRELAINFVARNPKYDSLAGCPDWARATLAKHANDP 352 Query: 321 ----HLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYF 376 + ++ T P+ +AA +++ G MHN LRM + K +L +W E Sbjct: 353 RPKLYTATQLERAETHDPLWNAAQKEMTLTGRMHNYLRM----YWAKKIL-EWSPDPETA 407 Query: 377 MSQLLD 382 + LD Sbjct: 408 FAVALD 413 >gi|183221779|ref|YP_001839775.1| deoxyribodipyrimidine photo-lyase [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] gi|167780201|gb|ABZ98499.1| Deoxyribodipyrimidine photolyase (DNA photolyase; Photoreactivating enzyme) [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] Length = 496 Score = 37.0 bits (84), Expect = 6.6, Method: Compositional matrix adjust. Identities = 55/213 (25%), Positives = 87/213 (40%), Gaps = 39/213 (18%) Query: 183 RLTGPVTPS---NIPRFFD-----YPFQAI-DPMFPI--GEQNALHILRKFCKEKVYYYV 231 +L G P +P+ D PFQ I P+ + G AL +L F K K+ Y+ Sbjct: 191 KLNGKTNPPERIGLPKSIDGILKLIPFQNIVSPVKGVKGGRNEALRLLNDFLKHKLDLYL 250 Query: 232 EQR---DIPAIQGTSQLSPYLSIGVL------------SPRQCWN--RLKEEF---VDLL 271 +R + P + TS LSPYL G + S + WN R+ E + Sbjct: 251 TKRSEPNRPELTATSGLSPYLHFGWIGLDEIFVAVLKHSAKGKWNPERMSHEKPGDREHF 310 Query: 272 IKPKSGAFSWLNELI-WREF-YRHLMAFYPSVCMGKPFIPWTE-KIEWNKDSH-----LL 323 P A +L+ELI WR+ Y P W + + +++ H L Sbjct: 311 YSPSVSANHFLDELITWRDIGYLFFWKDKPKQINLSHLPDWVKTNFQKHQNDHREYVYTL 370 Query: 324 QAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMI 356 + ++ T + +AA +L G +HN +RM+ Sbjct: 371 EQFESAKTHDELWNAAQTELVKTGKIHNYMRML 403 >gi|309389065|gb|ADO76945.1| DNA photolyase FAD-binding protein [Halanaerobium praevalens DSM 2228] Length = 454 Score = 37.0 bits (84), Expect = 6.9, Method: Compositional matrix adjust. Identities = 42/163 (25%), Positives = 64/163 (39%), Gaps = 17/163 (10%) Query: 202 QAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWN 261 Q + F G + A L F K K+ Y E+R+IP + S LSPYL G ++ Sbjct: 214 QDLSDHFRGGYKAAKLKLNDFLKNKLKDYEEKRNIPHLNFQSDLSPYLHFGQIAA----- 268 Query: 262 RLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK---PFIPWTEK--IEW 316 +E + + S+L ELI R +Y G W + +E Sbjct: 269 ---QEIALAALNSEYDEKSFLEELIVRRELAFNFVYYNQNYDGSLKDILYDWAYQSLMEH 325 Query: 317 NKDS----HLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRM 355 D + Q + T +AA +++ G MHN +RM Sbjct: 326 QADEREYLYTYQELENAKTHDKYWNAAQKEMLLTGKMHNYMRM 368 >gi|189911853|ref|YP_001963408.1| deoxyribodipyrimidine photolyase [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|167776529|gb|ABZ94830.1| Deoxyribodipyrimidine photolyase [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] Length = 523 Score = 37.0 bits (84), Expect = 7.0, Method: Compositional matrix adjust. Identities = 55/213 (25%), Positives = 87/213 (40%), Gaps = 39/213 (18%) Query: 183 RLTGPVTPS---NIPRFFD-----YPFQAI-DPMFPI--GEQNALHILRKFCKEKVYYYV 231 +L G P +P+ D PFQ I P+ + G AL +L F K K+ Y+ Sbjct: 218 KLNGKTNPPERIGLPKSIDGILKLIPFQNIVSPVKGVKGGRNEALRLLNDFLKHKLDLYL 277 Query: 232 EQR---DIPAIQGTSQLSPYLSIGVL------------SPRQCWN--RLKEEF---VDLL 271 +R + P + TS LSPYL G + S + WN R+ E + Sbjct: 278 TKRSEPNRPELTATSGLSPYLHFGWIGLDEIFVAVLKHSAKGKWNPERMSHEKPGDREHF 337 Query: 272 IKPKSGAFSWLNELI-WREF-YRHLMAFYPSVCMGKPFIPWTE-KIEWNKDSH-----LL 323 P A +L+ELI WR+ Y P W + + +++ H L Sbjct: 338 YSPSVSANHFLDELITWRDIGYLFFWKDKPKQINLSHLPDWVKTNFQKHQNDHREYVYTL 397 Query: 324 QAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMI 356 + ++ T + +AA +L G +HN +RM+ Sbjct: 398 EQFESAKTHDELWNAAQTELVKTGKIHNYMRML 430 >gi|157278339|ref|NP_001098271.1| photolyase [Oryzias latipes] gi|1401038|dbj|BAA05043.1| photolyase [Oryzias latipes] Length = 504 Score = 37.0 bits (84), Expect = 7.2, Method: Compositional matrix adjust. Identities = 39/157 (24%), Positives = 65/157 (41%), Gaps = 24/157 (15%) Query: 211 GEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDL 270 G + L +L F ++ + QR+ P SQLSP+L G LS ++ ++++ Sbjct: 273 GTEAGLAMLESFIDVRLKLFGTQRNDPNAAALSQLSPWLRFGQLSAQRVALQVRKN---- 328 Query: 271 LIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDS---------- 320 P AF + EL+ R FY K + T EW + + Sbjct: 329 -SSPSVPAF--IEELVVRRELTDNFCFY-----NKNYDSVTGAYEWAQKTLKDHAKDKRE 380 Query: 321 --HLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRM 355 + + +++ T + +AA Q+ T G MH LRM Sbjct: 381 YLYTREQFEKAQTHDKLWNAAQIQMVTEGKMHGFLRM 417 >gi|224099353|ref|XP_002334490.1| predicted protein [Populus trichocarpa] gi|222872649|gb|EEF09780.1| predicted protein [Populus trichocarpa] Length = 230 Score = 37.0 bits (84), Expect = 7.6, Method: Compositional matrix adjust. Identities = 23/74 (31%), Positives = 41/74 (55%), Gaps = 12/74 (16%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISAR--------QSHFIY 62 +VW RNDLR+ DN+ L +A +N V+ V+ P R +G S+ +++F+ Sbjct: 127 IVWFRNDLRVHDNECLNSA-NNDSMSVLPVYCFDP---RDYGKSSSGFDKTGPYRANFLI 182 Query: 63 ASLLQVQKSLSQKG 76 S+ ++K+L +G Sbjct: 183 ESVSDLRKNLQARG 196 >gi|316975640|gb|EFV59048.1| deoxyribodipyrimidine photolyase [Trichinella spiralis] Length = 515 Score = 37.0 bits (84), Expect = 7.8, Method: Compositional matrix adjust. Identities = 17/45 (37%), Positives = 27/45 (60%) Query: 211 GEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLS 255 G A+ +L F +K+ Y + R+IP + G S LSPY++ G +S Sbjct: 246 GHSEAVKLLDNFVSKKLPNYDKLRNIPGLDGQSGLSPYINFGHIS 290 >gi|226479206|emb|CAX73098.1| photorepair [Schistosoma japonicum] Length = 530 Score = 36.6 bits (83), Expect = 9.0, Method: Compositional matrix adjust. Identities = 39/178 (21%), Positives = 69/178 (38%), Gaps = 22/178 (12%) Query: 198 DYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPR 257 D + +D + P G + L L KF E++ Y + R+ P S LSP+ G ++P+ Sbjct: 286 DISVKPVDWIIP-GTNSGLTTLHKFIHERLSKYADCRNDPTKNCLSDLSPWFHYGQVAPQ 344 Query: 258 QC------WNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWT 311 + W ++ VD ++ I RE + + P + W Sbjct: 345 RALIEVKLWRHKYKDSVDAFVE---------EAFIRRELSDNFCYYNPKYDSMEGAWKWA 395 Query: 312 EKI------EWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363 + + S+ + T + +AA RQL G +H LRM A +++ Sbjct: 396 QDTLTQHAHDKRNPSYSEETMVSADTKDDLWNAAQRQLVRTGKLHGFLRMYWAKKILE 453 Searching..................................................done Results from round 2 >gi|254781170|ref|YP_003065583.1| deoxyribodipyrimidine photolyase [Candidatus Liberibacter asiaticus str. psy62] gi|254040847|gb|ACT57643.1| deoxyribodipyrimidine photolyase [Candidatus Liberibacter asiaticus str. psy62] Length = 483 Score = 660 bits (1702), Expect = 0.0, Method: Composition-based stats. Identities = 483/483 (100%), Positives = 483/483 (100%) Query: 1 MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHF 60 MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHF Sbjct: 1 MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHF 60 Query: 61 IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120 IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD Sbjct: 61 IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120 Query: 121 KLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVP 180 KLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVP Sbjct: 121 KLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVP 180 Query: 181 AIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ 240 AIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ Sbjct: 181 AIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ 240 Query: 241 GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPS 300 GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPS Sbjct: 241 GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPS 300 Query: 301 VCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASF 360 VCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASF Sbjct: 301 VCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASF 360 Query: 361 LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDP 420 LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDP Sbjct: 361 LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDP 420 Query: 421 QGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQ 480 QGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQ Sbjct: 421 QGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQ 480 Query: 481 SLL 483 SLL Sbjct: 481 SLL 483 >gi|315122561|ref|YP_004063050.1| deoxyribodipyrimidine photolyase [Candidatus Liberibacter solanacearum CLso-ZC1] gi|313495963|gb|ADR52562.1| deoxyribodipyrimidine photolyase [Candidatus Liberibacter solanacearum CLso-ZC1] Length = 477 Score = 590 bits (1520), Expect = e-166, Method: Composition-based stats. Identities = 363/476 (76%), Positives = 414/476 (86%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 MSVHLVWLRNDLRITDNKALYAAC N +AKVIAVFIATP+QW QHG+SARQ+ FIYA+LL Sbjct: 1 MSVHLVWLRNDLRITDNKALYAACKNPNAKVIAVFIATPQQWNQHGMSARQATFIYATLL 60 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 QVQ+SLS++GIV QYHQCS+FDD+I+WLD YC +++VT+LFYNRQYEINE RRD+ LE+R Sbjct: 61 QVQQSLSKRGIVLQYHQCSHFDDAIKWLDVYCQEKKVTELFYNRQYEINEHRRDQELERR 120 Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 L++RVIC+ FDDSVLLPPG I N A +MYK+YTPFRK IQNL Q+DLRS+P P IR TG Sbjct: 121 LKNRVICRGFDDSVLLPPGKIFNRACEMYKIYTPFRKEFIQNLTQSDLRSVPAPTIRQTG 180 Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246 PV + +P +FDYPFQ +DP+FPIGE NAL ILRKFCKEKV YYVEQRDIPAIQGTS LS Sbjct: 181 PVILTKVPLYFDYPFQEVDPIFPIGEYNALQILRKFCKEKVQYYVEQRDIPAIQGTSHLS 240 Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP 306 PYLSIG LSPRQCWNRL EF D+LIK SGAFSWLNELIWREFY HL+ FYPS+C GKP Sbjct: 241 PYLSIGALSPRQCWNRLNVEFSDVLIKTNSGAFSWLNELIWREFYHHLIVFYPSLCTGKP 300 Query: 307 FIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLL 366 FI WT+KIEWN D L+ WKQG TGFP++DAAMRQLNT+GWMHNRLRMITASFLVKDLL Sbjct: 301 FIQWTDKIEWNNDPRALEVWKQGNTGFPLVDAAMRQLNTMGWMHNRLRMITASFLVKDLL 360 Query: 367 VDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIR 426 +DWRIGE+YFMSQLLDG+LASNNGGWQWAASTG+DSVPYFRIFNPT QGKRFDP+G FIR Sbjct: 361 IDWRIGEKYFMSQLLDGNLASNNGGWQWAASTGHDSVPYFRIFNPTTQGKRFDPKGIFIR 420 Query: 427 HWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQSL 482 WLPEL NVP QYIH PH+W+D + YP PIVDHK+A HT+++Y A+KQS+ Sbjct: 421 QWLPELKNVPDQYIHTPHNWIDNKNTIHPYPHPIVDHKQARQHTISKYSIAQKQSI 476 >gi|157369495|ref|YP_001477484.1| deoxyribodipyrimidine photolyase [Serratia proteamaculans 568] gi|157321259|gb|ABV40356.1| Deoxyribodipyrimidine photo-lyase [Serratia proteamaculans 568] Length = 476 Score = 559 bits (1441), Expect = e-157, Method: Composition-based stats. Identities = 305/473 (64%), Positives = 374/473 (79%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M+ HLVWLRNDLRITDNKAL+AAC + DA+V+AVFIATP+QWRQH ++ RQ FI+A+LL Sbjct: 1 MTTHLVWLRNDLRITDNKALHAACSDPDARVLAVFIATPQQWRQHEMAPRQVAFIHANLL 60 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 QVQ++L+++GI YHQC +F +++WL +YC QQ+V +LFYNRQYEINE +RD+ LE+R Sbjct: 61 QVQQALAERGIPLGYHQCDDFAAAVDWLTAYCAQQQVDRLFYNRQYEINERQRDQRLEQR 120 Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 L + IC+SFDDS+LLPPGS+ + +MYK+YTPFRKA IQ L ++D++SLP P R G Sbjct: 121 LSGQAICQSFDDSLLLPPGSVQTGSGEMYKIYTPFRKAFIQRLTESDIQSLPAPKPRAGG 180 Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246 + + IP FDYP + FP GE+ AL LR FC+E+V Y+EQRD+PAI GTS LS Sbjct: 181 ALPVTAIPEAFDYPPAEPNEDFPAGEEAALQRLRSFCREQVQDYLEQRDLPAIAGTSSLS 240 Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP 306 PYL+IGVLSPRQC+NRL+ E LL SGAF WLNELIWREFYRHLM YP++C +P Sbjct: 241 PYLAIGVLSPRQCFNRLRAECPQLLENHDSGAFGWLNELIWREFYRHLMVAYPALCKHRP 300 Query: 307 FIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLL 366 FI WT+++ W + LLQAW+QG TG+PI+DAAMRQLNT GWMHNRLRMI+ASFLVKDLL Sbjct: 301 FIEWTDRVRWQDNQELLQAWQQGVTGYPIVDAAMRQLNTTGWMHNRLRMISASFLVKDLL 360 Query: 367 VDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIR 426 +DWR GE YFMSQLLDGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG+RFDPQGTFIR Sbjct: 361 IDWRAGESYFMSQLLDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGERFDPQGTFIR 420 Query: 427 HWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479 WL EL +VP IH PH W ++ L+YPLPIVDHK+A TL + AAK+ Sbjct: 421 KWLSELADVPDNAIHQPHRWAEQQQRVLDYPLPIVDHKQARLETLAAFEAAKR 473 >gi|270263757|ref|ZP_06192026.1| deoxyribodipyrimidine photolyase [Serratia odorifera 4Rx13] gi|270042641|gb|EFA15736.1| deoxyribodipyrimidine photolyase [Serratia odorifera 4Rx13] Length = 476 Score = 555 bits (1431), Expect = e-156, Method: Composition-based stats. Identities = 299/473 (63%), Positives = 366/473 (77%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M+ HLVWLRNDLRITDNKAL+AAC + A+V+AVFIATP QWRQH ++ RQ+ FI+A+LL Sbjct: 1 MATHLVWLRNDLRITDNKALHAACCDPAARVLAVFIATPGQWRQHEMAPRQAAFIHANLL 60 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 QVQ++L+ +GI HQC +F +++WL +YC Q+RV LFYNRQYEINE++RD+ ++R Sbjct: 61 QVQQALADRGIPLVCHQCDDFSAAVDWLVAYCAQERVNALFYNRQYEINELKRDQQAQRR 120 Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 L +VIC+SFDDS+LLPPGS+ +MYK+YTPFRKA IQ L ++D+RSLP P R G Sbjct: 121 LSGQVICQSFDDSLLLPPGSVQTGGGEMYKIYTPFRKAFIQRLTESDVRSLPAPKRREGG 180 Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246 + S P FDYP FP GE AL LR FC+E+V Y++QRD PAI GTS LS Sbjct: 181 ALPVSVAPAAFDYPQVEAGADFPAGEDAALKRLRAFCREQVQDYLQQRDFPAIAGTSSLS 240 Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP 306 PYL+IGVLSPRQC+NRL+ E +L SGAF WLNELIWREFYRHLM YP++C +P Sbjct: 241 PYLAIGVLSPRQCFNRLRAECPQVLENSDSGAFGWLNELIWREFYRHLMVAYPALCRHRP 300 Query: 307 FIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLL 366 FI WT+++ W + LL AW++G TG+PI+DAAMRQLN GWMHNRLRMI+ASFLVKDLL Sbjct: 301 FIEWTDRVRWRNNDALLLAWQKGATGYPIVDAAMRQLNKTGWMHNRLRMISASFLVKDLL 360 Query: 367 VDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIR 426 +DWR GE YFMSQLLDGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG+RFDPQGTFIR Sbjct: 361 IDWRAGERYFMSQLLDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGERFDPQGTFIR 420 Query: 427 HWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479 WLPEL +VP +H PH W +K +L+YPLPIVDHK+A TL + AAK+ Sbjct: 421 KWLPELADVPDNALHQPHLWAEKQQRTLDYPLPIVDHKQARLETLAAFEAAKR 473 >gi|320539319|ref|ZP_08038988.1| putative deoxyribodipyrimidine photolyase, FAD-binding [Serratia symbiotica str. Tucson] gi|320030444|gb|EFW12454.1| putative deoxyribodipyrimidine photolyase, FAD-binding [Serratia symbiotica str. Tucson] Length = 475 Score = 546 bits (1407), Expect = e-153, Method: Composition-based stats. Identities = 301/475 (63%), Positives = 365/475 (76%), Gaps = 1/475 (0%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M+ HLVWLRNDLRITDNKAL+AAC+ DA+V+AVFIATP+QWR+H I+ RQ+ I+ASL Sbjct: 1 MTTHLVWLRNDLRITDNKALHAACNEPDARVLAVFIATPQQWRRHDIAPRQAALIHASLK 60 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 Q+Q++L QKGI HQC +F SI+WL YC +Q+VT LFYNRQYE+NE RRD+ +E+R Sbjct: 61 QLQQALEQKGIPLYCHQCDDFAASIDWLTDYCAKQQVTVLFYNRQYELNEWRRDQQVEQR 120 Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 L RV C+ FDDS+LLPPGS+ + +MYKVYTPFR A I+ L ++D+R LP P R G Sbjct: 121 LAGRVRCQHFDDSLLLPPGSVQTGSGEMYKVYTPFRNAFIRRLTESDVRCLPAPQPR-AG 179 Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246 + + P F+Y FP GEQ AL LR FC+++V Y+ QRD+PAI GTS LS Sbjct: 180 ALPIPDAPPAFEYSHADPGEDFPAGEQAALQRLRAFCRQQVQDYLTQRDLPAIAGTSSLS 239 Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP 306 PYL+IG LSPRQC+NRL E +L + +SGAF WLNELIWREFYRHLMA YP++C +P Sbjct: 240 PYLAIGTLSPRQCFNRLCAEHPSVLEERESGAFGWLNELIWREFYRHLMAAYPALCRHRP 299 Query: 307 FIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLL 366 FI WT+K+ W D LLQAW++G TG+PI+DAAMRQLN GWMHNRLRMI+ASFLVKDLL Sbjct: 300 FIAWTDKVRWRNDESLLQAWQRGKTGYPIVDAAMRQLNNTGWMHNRLRMISASFLVKDLL 359 Query: 367 VDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIR 426 +DWR+GE YFMSQLLDGDLA+NNGGWQWAASTG D+VPYFRIFNPT Q +RFDPQGTFIR Sbjct: 360 IDWRVGERYFMSQLLDGDLAANNGGWQWAASTGTDAVPYFRIFNPTSQSERFDPQGTFIR 419 Query: 427 HWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481 WLPEL +VP IH PH W K L LNYPLP+VDH++A TL + AAK+ Sbjct: 420 KWLPELADVPDNDIHQPHLWAQKQQLVLNYPLPVVDHRQARLETLAAFEAAKQGG 474 >gi|322833858|ref|YP_004213885.1| Deoxyribodipyrimidine photo-lyase [Rahnella sp. Y9602] gi|321169059|gb|ADW74758.1| Deoxyribodipyrimidine photo-lyase [Rahnella sp. Y9602] Length = 476 Score = 538 bits (1385), Expect = e-150, Method: Composition-based stats. Identities = 276/475 (58%), Positives = 347/475 (73%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M+ HLVW RNDLRITDN+AL+AAC + A+VIAVF+ATPEQW+QH ++ RQ+ FIY L Sbjct: 1 MTTHLVWFRNDLRITDNRALHAACEDPQARVIAVFVATPEQWKQHEMAPRQAMFIYQHLQ 60 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 +Q +L+++GI YHQC +F DS+ WL +C ++V LFYN+QYE NE +RD LE Sbjct: 61 ALQHALAERGIGLHYHQCDDFADSVTWLKDFCKTEKVDALFYNKQYEFNERQRDAALENA 120 Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 + VIC +FDDS+LLPPGS++ +MYKVYTPFR+A + L ++D RSLP P R Sbjct: 121 VSESVICHAFDDSLLLPPGSVMTGNNEMYKVYTPFRRAFLSRLTESDSRSLPAPQTRGNA 180 Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246 ++ FDYP I F IGE+ A + LR FC+E+V Y+EQRD+PA+ GTS LS Sbjct: 181 EKVVTHRLMPFDYPLADIGDHFAIGEEAARNRLRSFCREQVQDYLEQRDLPAVDGTSSLS 240 Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP 306 PYL+IGVLSPRQC NRL+ E D+L K GAF WLNEL+WREFYRHL+ +P +C +P Sbjct: 241 PYLAIGVLSPRQCLNRLRAECPDVLEKTDGGAFGWLNELVWREFYRHLIVAWPKLCKHQP 300 Query: 307 FIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLL 366 F+ WT+ + W LQAWK G TG+PI+DAAMRQLN GWMHNRLRMI ASFLVKDLL Sbjct: 301 FVAWTDNVRWRHAPDDLQAWKDGKTGYPIVDAAMRQLNATGWMHNRLRMIVASFLVKDLL 360 Query: 367 VDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIR 426 ++WR GE YFMSQLLDGDLA+NNGGWQW ASTG D+ PYFRIFNPT QG+RFD G FI+ Sbjct: 361 INWREGERYFMSQLLDGDLAANNGGWQWGASTGTDAAPYFRIFNPTTQGERFDKTGCFIK 420 Query: 427 HWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481 W+PEL +VP + IH PH W +K+ L+YPLP++DH +A TL + AAK +S Sbjct: 421 AWVPELADVPERDIHQPHRWAEKHHRVLDYPLPVIDHAQARKDTLAAFEAAKNRS 475 >gi|209917958|ref|YP_002292042.1| deoxyribodipyrimidine photolyase [Escherichia coli SE11] gi|293432976|ref|ZP_06661404.1| deoxyribodipyrimidine photo-lyase [Escherichia coli B088] gi|300823005|ref|ZP_07103140.1| FAD binding domain of DNA photolyase [Escherichia coli MS 119-7] gi|331667072|ref|ZP_08367937.1| deoxyribodipyrimidine photo-lyase (DNA photolyase)(Photoreactivating enzyme) [Escherichia coli TA271] gi|331676388|ref|ZP_08377085.1| deoxyribodipyrimidine photo-lyase (DNA photolyase)(Photoreactivating enzyme) [Escherichia coli H591] gi|209911217|dbj|BAG76291.1| deoxyribodipyrimidine photolyase [Escherichia coli SE11] gi|291323795|gb|EFE63217.1| deoxyribodipyrimidine photo-lyase [Escherichia coli B088] gi|300524546|gb|EFK45615.1| FAD binding domain of DNA photolyase [Escherichia coli MS 119-7] gi|324020349|gb|EGB89568.1| FAD binding domain of DNA photolyase [Escherichia coli MS 117-3] gi|331065428|gb|EGI37321.1| deoxyribodipyrimidine photo-lyase (DNA photolyase)(Photoreactivating enzyme) [Escherichia coli TA271] gi|331075881|gb|EGI47178.1| deoxyribodipyrimidine photo-lyase (DNA photolyase)(Photoreactivating enzyme) [Escherichia coli H591] Length = 472 Score = 535 bits (1379), Expect = e-150, Method: Composition-based stats. Identities = 250/476 (52%), Positives = 330/476 (69%), Gaps = 5/476 (1%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M+ HLVW R DLR+ DN AL AAC NS A+V+A++IATP QW H +S RQ+ I A L Sbjct: 1 MTTHLVWFRQDLRLHDNLALAAACRNSSARVLALYIATPRQWETHNMSPRQAELINAQLN 60 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 +Q +L++KGI + + +F S+E + C + VT LFYN QYE+NE RD +E+ Sbjct: 61 GLQIALAEKGIPLLFREVDDFVASVEIVKQVCAENSVTHLFYNYQYEVNERARDVEVERA 120 Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 L+ V+C+ FDDSV+LPPG+++ +MYKV+TPF+ A ++ L + + P +R +G Sbjct: 121 LR-NVVCEGFDDSVILPPGAVMTGNHEMYKVFTPFKNAWLKRLREGMPECVAAPKVRSSG 179 Query: 187 PVTPSNIPRFFDYPFQAIDP-MFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245 + PS +YP Q+ D FP+ E+ A+ LR+FC+ Y +QRD PA++GTS+L Sbjct: 180 SIEPSPSITL-NYPRQSFDTAHFPVEEKAAIAQLRQFCQNGAGDYEQQRDFPAVEGTSRL 238 Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305 S L+ G LSPRQC +RL E L WL+ELIWREFYRHLM +YPS+C + Sbjct: 239 SASLATGGLSPRQCLHRLLAEQPQALDGGAGSV--WLSELIWREFYRHLMTYYPSLCKHR 296 Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365 PFI WT++++W + LQAW++G TG+PI+DAAMRQLN+ GWMHNRLRMITASFLVKDL Sbjct: 297 PFIAWTDRVQWQSNPAHLQAWQKGKTGYPIVDAAMRQLNSTGWMHNRLRMITASFLVKDL 356 Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425 L+DWR GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNP QG++FD +G FI Sbjct: 357 LIDWREGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPITQGEKFDREGEFI 416 Query: 426 RHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481 R WLPEL +VP + +H P W K + L+YP PIVDHK+A TL Y A+K + Sbjct: 417 RRWLPELRDVPGKAVHEPWKWAQKAGVKLDYPQPIVDHKEARLRTLAAYEEARKGA 472 >gi|293397249|ref|ZP_06641522.1| deoxyribodipyrimidine photolyase [Serratia odorifera DSM 4582] gi|291420269|gb|EFE93525.1| deoxyribodipyrimidine photolyase [Serratia odorifera DSM 4582] Length = 476 Score = 535 bits (1378), Expect = e-150, Method: Composition-based stats. Identities = 287/475 (60%), Positives = 356/475 (74%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M+ HLVWLRNDLR+TDN+ALYAAC + A V+AVFIATP+QWRQH ++ARQ+ FI+A+L Sbjct: 1 MTTHLVWLRNDLRVTDNQALYAACRDPQATVMAVFIATPQQWRQHHMAARQAAFIHATLR 60 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 Q+Q++L+Q+GI QC +F +++WL +C V LFYNRQYE+NE RRD+ LE+R Sbjct: 61 QLQQALAQRGIPLVTQQCDDFAAAVDWLADFCQASHVDALFYNRQYELNERRRDRQLEQR 120 Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 L V C++FDDS+LLPPGS+L+ +MYK+YTPFR+A + L ++D+ SLP PA R G Sbjct: 121 LNGMVNCQAFDDSLLLPPGSVLSGNGEMYKMYTPFRRAFLARLAESDIASLPAPAQRSCG 180 Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246 P FDYP +D FP GE+ AL LR FC+++V Y QRDIPA+ GTS LS Sbjct: 181 QWQAITPPAPFDYPAAELDDGFPAGEEAALRRLRHFCRQQVQDYHHQRDIPAVDGTSVLS 240 Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP 306 PYL++G LSPRQC NRL+ E D+L P GAF WLNELIWREFYRHL+ P++C +P Sbjct: 241 PYLAVGALSPRQCVNRLRAECPDMLANPHGGAFCWLNELIWREFYRHLLVANPALCRHRP 300 Query: 307 FIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLL 366 FI WT+++ WN + AW+QG TG+PI+DAAMRQLN GWMHNRLRMI ASFLVKDLL Sbjct: 301 FIAWTDRVRWNPAADNFLAWQQGRTGYPIVDAAMRQLNQTGWMHNRLRMIAASFLVKDLL 360 Query: 367 VDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIR 426 +DWR GE YFMSQLLDGDLA+NNGGWQWAASTG D+ PYFRIFNPT QGKRFDPQG+FIR Sbjct: 361 IDWRAGERYFMSQLLDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGKRFDPQGSFIR 420 Query: 427 HWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481 WLPEL +VP +H PH W +K L+YPLPIVDH +A TL + AAK+ + Sbjct: 421 KWLPELADVPDNELHQPHRWAEKQQRVLDYPLPIVDHPQARLATLAAFDAAKRGA 475 >gi|331645860|ref|ZP_08346963.1| deoxyribodipyrimidine photo-lyase (DNA photolyase)(Photoreactivating enzyme) [Escherichia coli M605] gi|330910459|gb|EGH38969.1| deoxyribodipyrimidine photolyase [Escherichia coli AA86] gi|331044612|gb|EGI16739.1| deoxyribodipyrimidine photo-lyase (DNA photolyase)(Photoreactivating enzyme) [Escherichia coli M605] Length = 472 Score = 534 bits (1375), Expect = e-149, Method: Composition-based stats. Identities = 249/476 (52%), Positives = 333/476 (69%), Gaps = 5/476 (1%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M+ HLVW R DLR+ DN AL AAC NS A+V+A++IATP QW H +S RQ+ I L Sbjct: 1 MTTHLVWFRQDLRLHDNLALAAACRNSSARVLALYIATPRQWAAHNVSPRQAELINTQLN 60 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 +Q +L++KGI + + +F S+E + C + RVT LFYN QYE+NE RD +E+ Sbjct: 61 ALQNALAEKGIPLLFREVDDFAASVEIVKQVCAENRVTHLFYNYQYEVNERARDVEVERA 120 Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 L+ V+C+ FDDSV+LPPG+++ +MYKV+TPF+ A ++ L + + P +R +G Sbjct: 121 LR-NVVCEGFDDSVILPPGAVMTGNHEMYKVFTPFKNAWLKRLREGMPECVAAPKVRSSG 179 Query: 187 PVTPSNIPRFFDYPFQAIDP-MFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245 + P+ +YP Q+ D FP+ E+ A+ LR+FC+ Y +QRD PA++GTS+L Sbjct: 180 SIDPAPSITL-NYPCQSFDTAHFPVEEKAAIAQLRQFCQNGAGEYEQQRDFPAVEGTSRL 238 Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305 S L+ G LSPRQC +RL E L WL+ELIWREFYRHLM +YPS+C + Sbjct: 239 SASLATGGLSPRQCLHRLLAEQPQALDGGAGSV--WLSELIWREFYRHLMTYYPSLCKHR 296 Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365 PFI WT++++W + L+AW++G TG+PI+DAAMRQLN+ GWMHNRLRMITASFLVKDL Sbjct: 297 PFIAWTDRVQWQSNPAHLKAWQEGKTGYPIVDAAMRQLNSTGWMHNRLRMITASFLVKDL 356 Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425 L+DWR GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG++FD +G FI Sbjct: 357 LIDWREGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGEKFDHEGEFI 416 Query: 426 RHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481 R WLPEL +VP + +H P W +K ++L+YP PIVDHK+A TL Y A+K + Sbjct: 417 RQWLPELRDVPGKAVHEPWKWAEKTGVTLDYPQPIVDHKEARLRTLAAYEEARKGA 472 >gi|238752103|ref|ZP_04613586.1| Deoxyribodipyrimidine photo-lyase [Yersinia rohdei ATCC 43380] gi|238709680|gb|EEQ01915.1| Deoxyribodipyrimidine photo-lyase [Yersinia rohdei ATCC 43380] Length = 480 Score = 533 bits (1374), Expect = e-149, Method: Composition-based stats. Identities = 276/476 (57%), Positives = 344/476 (72%), Gaps = 1/476 (0%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M+ HLVW RNDLRITDN AL+AAC +S A VIAVF+ATP QW + ++ RQ+ F++ +L Sbjct: 1 MATHLVWFRNDLRITDNLALHAACKDSQATVIAVFVATPVQWGKQDMAPRQAAFLWQNLQ 60 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 Q++ L+++ I YHQC F DSI WLD +C Q ++ LFYN+QYE NE +RD L + Sbjct: 61 QLRAVLAERAIPLHYHQCDEFKDSINWLDDFCQQHQIDALFYNQQYEWNERQRDDALIAK 120 Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 L RVIC SF DS+LLPPGS+L +MY+V+TPFR+A IQ L+ +D RS+P P R T Sbjct: 121 LAGRVICHSFHDSLLLPPGSVLTGNGKMYQVFTPFRRAFIQRLMMSDYRSVPAPKARQTK 180 Query: 187 PVTPSNIPRFFDYPFQAID-PMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245 FDYP Q++D +FP GE+ AL LR FC+E+V Y +QRD+PA+ GTS L Sbjct: 181 IAIEPASWGPFDYPQQSVDNQLFPAGEEAALLRLRTFCREQVQDYQQQRDLPAVAGTSCL 240 Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305 SPYL++G+LSPRQC NRL+ E ++ K GAF WLNELIWREFYRHL+ YP +C + Sbjct: 241 SPYLALGILSPRQCVNRLRAECPEVFEKADGGAFIWLNELIWREFYRHLLVAYPRLCQHR 300 Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365 PFI WT+ + WN L AW+QG TG+PI+DAAMRQLN GWMHNRLRMI+ASFLVKDL Sbjct: 301 PFIDWTDAVVWNHSEQHLLAWQQGRTGYPIVDAAMRQLNETGWMHNRLRMISASFLVKDL 360 Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425 L++WR GE YFMSQLLDGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG+RFD +G FI Sbjct: 361 LINWRHGERYFMSQLLDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGERFDKKGIFI 420 Query: 426 RHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481 R WLPEL+ VP IH P W + L+YP P+VDHK+A TL + AAK+ Sbjct: 421 RRWLPELSAVPDSDIHQPWHWAQQQQHPLDYPPPLVDHKQARLATLAAFDAAKRDG 476 >gi|251790504|ref|YP_003005225.1| deoxyribodipyrimidine photolyase [Dickeya zeae Ech1591] gi|247539125|gb|ACT07746.1| Deoxyribodipyrimidine photo-lyase [Dickeya zeae Ech1591] Length = 476 Score = 533 bits (1374), Expect = e-149, Method: Composition-based stats. Identities = 269/474 (56%), Positives = 344/474 (72%), Gaps = 1/474 (0%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M+ HLVW R+DLR+TDN AL+AAC + +A+V AVFIATP+QW H ++ Q+ F+ +L Sbjct: 1 MTTHLVWFRHDLRLTDNLALHAACQDPEARVEAVFIATPQQWASHDMAPCQAAFLLGNLR 60 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 +Q++L +KGI YHQC +F S+ WL ++C + +VT+LFYNRQYE NE RRD+ LE Sbjct: 61 CLQQALQEKGIPLHYHQCDDFAASVRWLTAFCREHQVTRLFYNRQYEWNERRRDEQLEPA 120 Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 L C FDDS+LLPPGS++ + MYKV+TPFR A I+ L Q D+ S+P P R G Sbjct: 121 LAGVTDCYGFDDSLLLPPGSVVTGSGDMYKVFTPFRAAFIKRLQQQDVGSVPAPVSRHQG 180 Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246 T + FDYP + FP+GE AL LR+FC+E+ +Y E+RD+PA TS+LS Sbjct: 181 EFTLVPLAP-FDYPQTDVHADFPVGESAALQRLRQFCREQAAFYHERRDLPAQAATSKLS 239 Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP 306 PYL++G+LSPRQC+NRL+ E D L +P+SGAF+W NEL+WREFYRHL+ F PS+C +P Sbjct: 240 PYLALGILSPRQCFNRLRMEHPDWLTRPESGAFTWFNELVWREFYRHLLVFSPSLCKHQP 299 Query: 307 FIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLL 366 FI WT K+ W L AW++G TG+PI+DAAMRQLN GWMHNRLRMI ASFLVKDLL Sbjct: 300 FIGWTRKVAWRNAPDELAAWQRGETGYPIVDAAMRQLNQTGWMHNRLRMICASFLVKDLL 359 Query: 367 VDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIR 426 +DW GE YFMS+LLDGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG+RFDP+G FIR Sbjct: 360 IDWCEGERYFMSRLLDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGERFDPEGEFIR 419 Query: 427 HWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQ 480 W+PEL +P + +H PH W + ++YP PIVDHK+A TL + AAKK Sbjct: 420 RWVPELAQIPGKAVHQPHDWAIRQHRRIDYPAPIVDHKQARTRTLTAFEAAKKS 473 >gi|281177846|dbj|BAI54176.1| deoxyribodipyrimidine photolyase [Escherichia coli SE15] Length = 472 Score = 533 bits (1373), Expect = e-149, Method: Composition-based stats. Identities = 249/476 (52%), Positives = 333/476 (69%), Gaps = 5/476 (1%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M+ HLVW R DLR+ DN AL AAC NS A+V+A++IATP QW H +S RQ+ I L Sbjct: 1 MTTHLVWFRQDLRLHDNLALAAACRNSSARVLALYIATPRQWAAHNVSPRQAELINTQLN 60 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 +Q +L++KGI + + +F S+E + C + RVT LFYN QYE+NE RD +E+ Sbjct: 61 ALQNALAEKGIPLLFREVDDFAASVEIVKQVCAENRVTHLFYNYQYEVNERARDVEVERA 120 Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 L+ V+C+ FDDSV+LPPG+++ +MYKV+TPF+ A ++ L + + P +R +G Sbjct: 121 LR-NVVCEGFDDSVILPPGAVMTGNHEMYKVFTPFKNAWLKRLREGMPECVAAPKVRSSG 179 Query: 187 PVTPSNIPRFFDYPFQAIDP-MFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245 + P+ +YP Q+ D FP+ E+ A+ LR+FC+ Y +QRD PA++GTS+L Sbjct: 180 AIDPAPSITL-NYPRQSFDTAHFPVEEKAAIAQLRQFCQNGAGEYEQQRDFPAVEGTSRL 238 Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305 S L+ G LSPRQC +RL E L WL+ELIWREFYRHLM +YPS+C + Sbjct: 239 SASLATGGLSPRQCLHRLLAEQPQALDGGAGSV--WLSELIWREFYRHLMTYYPSLCKHR 296 Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365 PFI WT++++W + L+AW++G TG+PI+DAAMRQLN+ GWMHNRLRMITASFLVKDL Sbjct: 297 PFIAWTDRVQWQSNPAHLKAWQEGKTGYPIVDAAMRQLNSTGWMHNRLRMITASFLVKDL 356 Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425 L+DWR GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG++FD +G FI Sbjct: 357 LIDWREGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGEKFDREGEFI 416 Query: 426 RHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481 R WLPEL +VP + +H P W +K ++L+YP PIVDHK+A TL Y A+K + Sbjct: 417 RQWLPELRDVPGKAVHEPWKWAEKTGVTLDYPQPIVDHKEARLRTLAAYEEARKGA 472 >gi|323947030|gb|EGB43044.1| DNA photolyase [Escherichia coli H120] Length = 472 Score = 533 bits (1372), Expect = e-149, Method: Composition-based stats. Identities = 250/476 (52%), Positives = 329/476 (69%), Gaps = 5/476 (1%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M HLVW R DLR+ DN AL AAC NS A+V+A++IATP QW H +S RQ+ I A L Sbjct: 1 MITHLVWFRQDLRLHDNLALAAACRNSSARVLALYIATPRQWATHNMSPRQAELINAQLN 60 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 +Q +L++KGI + + +F S+E + C + VT LFYN QYE+NE RD +E+ Sbjct: 61 GLQIALAEKGIPLLFREVDDFVASVEIVKQVCAENSVTHLFYNYQYEVNERARDVEVERA 120 Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 L+ V+C+ FDDSV+LPPG+++ +MYKV+TPF+ A ++ L + + P +R +G Sbjct: 121 LR-NVVCEGFDDSVILPPGAVMTGNHEMYKVFTPFKNAWLKRLREGMPECVAAPKVRSSG 179 Query: 187 PVTPSNIPRFFDYPFQAIDP-MFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245 + PS +YP Q+ D FP+ E+ A+ LR+FC+ Y +QRD PA++GTS+L Sbjct: 180 SIEPSPSITL-NYPRQSFDTAHFPVEEKAAIAQLRQFCQNGAGDYEQQRDFPAVEGTSRL 238 Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305 S L+ G LSPRQC +RL E L WL+ELIWREFYRHLM +YPS+C + Sbjct: 239 SASLATGGLSPRQCLHRLLAEQPQALDGGAGSV--WLSELIWREFYRHLMTYYPSLCKHR 296 Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365 PFI WT++++W + LQAW++G TG+PI+DAAMRQLN+ GWMHNRLRMITASFLVKDL Sbjct: 297 PFIAWTDRVQWQSNPAHLQAWQKGKTGYPIVDAAMRQLNSTGWMHNRLRMITASFLVKDL 356 Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425 L+DWR GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNP QG++FD +G FI Sbjct: 357 LIDWREGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPITQGEKFDREGEFI 416 Query: 426 RHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481 R WLPEL +VP + +H P W K + L+YP PIVDHK+A TL Y A+K + Sbjct: 417 RRWLPELRDVPGKAVHEPWKWAQKAGVKLDYPQPIVDHKEARLRTLAAYEEARKGA 472 >gi|307130086|ref|YP_003882102.1| deoxyribodipyrimidine photolyase, FAD-binding protein [Dickeya dadantii 3937] gi|306527615|gb|ADM97545.1| deoxyribodipyrimidine photolyase, FAD-binding protein [Dickeya dadantii 3937] Length = 476 Score = 533 bits (1372), Expect = e-149, Method: Composition-based stats. Identities = 267/475 (56%), Positives = 347/475 (73%), Gaps = 1/475 (0%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M+ HLVW R+DLR+TDN AL+AAC + DA+V AVFIATP+QW H ++ Q+ F+ +L Sbjct: 1 MTTHLVWFRHDLRLTDNLALHAACQDPDARVEAVFIATPQQWASHAMAPCQAAFLLGNLR 60 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 +Q+ L +K I Y QC +F + WL +C ++VT+LFYNRQYE NE +RD+ LE+ Sbjct: 61 CLQQELREKSIPLHYRQCDDFAAGVRWLADFCRARQVTRLFYNRQYEWNERQRDQQLEQA 120 Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 L C+ FDDS+LLPPGS++ + MYKV+TPFR A ++ L Q D+ S+P PA R G Sbjct: 121 LTDVTECRGFDDSLLLPPGSVVTGSGDMYKVFTPFRAAFLKQLQQRDVGSVPAPAARQQG 180 Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246 +TP+++ FDYP + FP GE AL LR+FC+E+V +Y EQRD+PA+ TS+LS Sbjct: 181 DITPASLAP-FDYPQTDVHADFPAGEPAALQRLRQFCREQVMFYHEQRDLPALAATSKLS 239 Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP 306 PYL++GVLSPRQC+NRL+ E D L + +SGAF+W NEL+WREFYRHL+ F P++C +P Sbjct: 240 PYLALGVLSPRQCFNRLRMEHPDWLARSESGAFTWFNELVWREFYRHLLVFSPALCKHQP 299 Query: 307 FIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLL 366 FI WT ++ W L AW++G TG+PI+DAAMRQLN GWMHNRLRMI ASFLVKDLL Sbjct: 300 FISWTRRVAWRNAPDELAAWQRGETGYPIVDAAMRQLNQTGWMHNRLRMICASFLVKDLL 359 Query: 367 VDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIR 426 +DW GE YFMSQLLDGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG+RFDP+G FIR Sbjct: 360 IDWCEGERYFMSQLLDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGERFDPEGEFIR 419 Query: 427 HWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481 W+PEL +P + +H PH W + ++YPLP+VDHK+A TL + AAK + Sbjct: 420 RWVPELAQIPGKAVHQPHEWAIRQQRQIDYPLPMVDHKQARTRTLAAFEAAKNGA 474 >gi|320175355|gb|EFW50459.1| Deoxyribodipyrimidine photolyase [Shigella dysenteriae CDC 74-1112] Length = 472 Score = 532 bits (1371), Expect = e-149, Method: Composition-based stats. Identities = 251/476 (52%), Positives = 330/476 (69%), Gaps = 5/476 (1%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M+ HLVW R DLR+ DN AL AAC NS A+V+A++IATP QW H +S RQ+ I A L Sbjct: 1 MTTHLVWFRQDLRLHDNLALAAACRNSSARVLALYIATPRQWATHNMSPRQAELINAQLN 60 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 +Q +L++KGI + + +F S+E + C + VT LFYN QYE+NE RD +E+ Sbjct: 61 GLQIALAEKGIPLLFREVDDFVASVEIVKQVCAENSVTHLFYNYQYEVNERARDVEVERA 120 Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 L+ V+C+ FDDSV+LPPG+++ +MYKV+TPF+ A ++ L + + P +R +G Sbjct: 121 LR-NVVCEGFDDSVILPPGAVMTGNHEMYKVFTPFKNAWLKRLREGMPECVAAPKVRSSG 179 Query: 187 PVTPSNIPRFFDYPFQAIDP-MFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245 + PS +YP Q+ D FP+ E+ A+ LR+FC+ Y +QRD PA++GTS+L Sbjct: 180 SIEPSPSITL-NYPRQSFDTAHFPVEEKAAIAQLRQFCQNGAGEYEQQRDFPAVEGTSRL 238 Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305 S L+ G LSPRQC +RL E L WL+ELIWREFYRHLM +YPS+C Sbjct: 239 SASLATGGLSPRQCLHRLLAEQPQALDGGAGSV--WLSELIWREFYRHLMTYYPSLCKHC 296 Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365 PFI WT++++W + LQAW++G TG+PI+DAAMRQLN+ GWMHNRLRMITASFLVKDL Sbjct: 297 PFIAWTDRVQWQSNPAHLQAWQEGKTGYPIVDAAMRQLNSTGWMHNRLRMITASFLVKDL 356 Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425 L+DWR GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG++FD +G FI Sbjct: 357 LIDWREGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGEKFDREGEFI 416 Query: 426 RHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481 R WLPEL +VP + +H P W K + L+YP PIVDHK+A TL Y A+K + Sbjct: 417 RRWLPELRDVPGKAVHEPWKWAQKAGVMLDYPQPIVDHKEARLRTLAAYEEARKGA 472 >gi|317491170|ref|ZP_07949606.1| DNA photolyase [Enterobacteriaceae bacterium 9_2_54FAA] gi|316920717|gb|EFV42040.1| DNA photolyase [Enterobacteriaceae bacterium 9_2_54FAA] Length = 476 Score = 532 bits (1371), Expect = e-149, Method: Composition-based stats. Identities = 272/475 (57%), Positives = 340/475 (71%), Gaps = 3/475 (0%) Query: 8 SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67 + H+VW RNDLRITDN+AL+AAC + AKVIAV+IATPEQW+QH ++ RQ+ FI+ +L Sbjct: 3 ATHVVWFRNDLRITDNRALHAACQDPQAKVIAVYIATPEQWKQHDMAPRQAAFIHQNLQC 62 Query: 68 VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127 + +L+ K I YHQC++F S +WL +C + VT LFYNRQYE+NE RRD + + L Sbjct: 63 LVHALAGKNIPLFYHQCTDFTASAKWLVDFCQKNEVTDLFYNRQYELNERRRDDAVTELL 122 Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187 SFDD++LLPPGS++ + +MYKV+TPFR A +Q L +D+RSLP P R Sbjct: 123 AGVCGIHSFDDALLLPPGSVVTGSGEMYKVFTPFRNAFLQRLTHSDVRSLPAPKTREQAC 182 Query: 188 VTPSNIPRFFDYPFQAIDP-MFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246 + FDY Q +D +FP GE+ AL LR FC+E V Y +QRDIPA+ GTS LS Sbjct: 183 EMSE--IKPFDYSQQGLDSVLFPAGEEAALQRLRVFCREHVQDYAQQRDIPAVDGTSVLS 240 Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP 306 PYL++GVLSPRQC NRL E D L +SGAF WLNEL+WREFYRHL+ +P +C KP Sbjct: 241 PYLAVGVLSPRQCLNRLLAECPDTLEDGESGAFVWLNELVWREFYRHLLVAHPKLCRHKP 300 Query: 307 FIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLL 366 FI WT+ + W+ D L AW+QG TG+PI+DAAMRQLN GWMHNRLRMI ASFLVKDLL Sbjct: 301 FIAWTDHVHWSGDIEHLTAWQQGETGYPIVDAAMRQLNHTGWMHNRLRMIVASFLVKDLL 360 Query: 367 VDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIR 426 ++WR GE YFMSQL+DGDLA+NNGGWQWAAS+G D+ PYFRIFNPT QG+RFD +G FIR Sbjct: 361 INWRAGERYFMSQLIDGDLAANNGGWQWAASSGTDAAPYFRIFNPTTQGERFDKKGDFIR 420 Query: 427 HWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481 WLPEL +VP IH PH W K L+YP P+VDH A TL + AK+++ Sbjct: 421 RWLPELADVPDSDIHHPHQWAMKQCRVLDYPQPLVDHALARKQTLQAFEDAKRRA 475 >gi|82543137|ref|YP_407084.1| deoxyribodipyrimidine photolyase [Shigella boydii Sb227] gi|81244548|gb|ABB65256.1| deoxyribodipyrimidine photolyase [Shigella boydii Sb227] gi|320183678|gb|EFW58518.1| Deoxyribodipyrimidine photolyase [Shigella flexneri CDC 796-83] gi|332097668|gb|EGJ02643.1| deoxyribodipyrimidine photo-lyase [Shigella boydii 3594-74] Length = 472 Score = 532 bits (1370), Expect = e-149, Method: Composition-based stats. Identities = 251/476 (52%), Positives = 330/476 (69%), Gaps = 5/476 (1%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M+ HLVW R DLR+ DN AL AAC NS A+V+A++IATP QW H +S RQ+ I A L Sbjct: 1 MTTHLVWFRQDLRLHDNLALAAACSNSSARVLALYIATPRQWATHNMSPRQAELINAQLN 60 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 +Q +L++KGI + + +F S+E + C + VT LFYN QYE+NE RD +E+ Sbjct: 61 GLQIALAEKGIPLLFREVDDFVASVEIVKQVCAENSVTHLFYNYQYEVNERARDVEVERA 120 Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 L+ V+C+ FDDSV+LPPG+++ +MYKV+TPF+ A ++ L + + P +R +G Sbjct: 121 LR-NVVCEGFDDSVILPPGAVMTGNHEMYKVFTPFKNAWLKRLREGMPECVAAPKVRSSG 179 Query: 187 PVTPSNIPRFFDYPFQAIDP-MFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245 + PS +YP Q+ D FP+ E+ A+ LR+FC+ Y +QRD PA++GTS+L Sbjct: 180 SIEPSPSITL-NYPRQSFDTAHFPVEEKAAIAQLRQFCQNGAGEYEQQRDFPAVEGTSRL 238 Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305 S L+ G LSPRQC +RL E L WL+ELIWREFYRHLM +YPS+C Sbjct: 239 SASLATGGLSPRQCLHRLLAEQPQALDGGAGSV--WLSELIWREFYRHLMTYYPSLCKHC 296 Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365 PFI WT++++W + LQAW++G TG+PI+DAAMRQLN+ GWMHNRLRMITASFLVKDL Sbjct: 297 PFIAWTDRVQWQSNPAHLQAWQEGKTGYPIVDAAMRQLNSTGWMHNRLRMITASFLVKDL 356 Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425 L+DWR GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG++FD +G FI Sbjct: 357 LIDWREGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGEKFDREGEFI 416 Query: 426 RHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481 R WLPEL +VP + +H P W K + L+YP PIVDHK+A TL Y A+K + Sbjct: 417 RRWLPELRDVPGKAVHEPWKWAQKAGVMLDYPQPIVDHKEARLRTLAAYEEARKGA 472 >gi|323170823|gb|EFZ56473.1| deoxyribodipyrimidine photo-lyase [Escherichia coli LT-68] Length = 472 Score = 532 bits (1370), Expect = e-149, Method: Composition-based stats. Identities = 251/476 (52%), Positives = 331/476 (69%), Gaps = 5/476 (1%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M+ HLVW R DLR+ DN AL AAC NS A+V+A++IATP QW H +S RQ+ I A L Sbjct: 1 MTTHLVWFRQDLRLHDNLALAAACRNSSARVLALYIATPRQWATHNMSPRQAELINAQLN 60 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 +Q +L++KGI + + +F S+E + C + VT LFYN QYE+NE RD +E+ Sbjct: 61 GLQIALAEKGIPLLFREVDDFVASVEIVKQVCAENSVTHLFYNYQYEVNERARDVEVERA 120 Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 L+ V+C+ FDDSV+LPPG+++ +MYKV+TPF+ A ++ L + + P +R +G Sbjct: 121 LR-NVVCEGFDDSVILPPGAVMTGNHEMYKVFTPFKNAWLKRLREGMPECVAAPKVRSSG 179 Query: 187 PVTPSNIPRFFDYPFQAIDP-MFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245 + PS +YP Q+ D FP+ E+ A+ LR+FC+ Y +QRD PA++GTS+L Sbjct: 180 SIEPSPSITL-NYPRQSFDTAHFPVEEKAAIAQLRQFCQNGAGEYEQQRDFPAVEGTSRL 238 Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305 S L+ G LSPRQC +RL E L WL+ELIWREFYRHLM +YPS+C Sbjct: 239 SASLATGGLSPRQCLHRLLAEQPQALDGGAGSV--WLSELIWREFYRHLMTYYPSLCKHC 296 Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365 PFI WT++++W + LQAW++G TG+PI+DAAMRQLN+ GWMHNRLRMITASFLVKDL Sbjct: 297 PFIAWTDRVQWQSNPAHLQAWQEGKTGYPIVDAAMRQLNSTGWMHNRLRMITASFLVKDL 356 Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425 L+DWR GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG++FD +G FI Sbjct: 357 LIDWREGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGEKFDREGEFI 416 Query: 426 RHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481 R WLPEL +VP + +H P W K + L+YP PIVDHK+A TL Y A+K++ Sbjct: 417 RRWLPELRDVPGKAVHEPWKWAQKAGVMLDYPQPIVDHKEARLRTLAAYEEARKEA 472 >gi|284920486|emb|CBG33548.1| deoxyribodipyrimidine photolyase [Escherichia coli 042] Length = 472 Score = 532 bits (1370), Expect = e-149, Method: Composition-based stats. Identities = 248/476 (52%), Positives = 332/476 (69%), Gaps = 5/476 (1%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M+ HLVW R DLR+ DN AL AAC NS A+V+A++IATP QW H +S RQ+ I A L Sbjct: 1 MTTHLVWFRQDLRLHDNLALAAACRNSSARVLALYIATPRQWATHNMSPRQAKLINAQLN 60 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 ++ +L++KGI + + +F S+E + C + VT LFYN QYE+NE RD +E+ Sbjct: 61 GLRIALAEKGIPLLFREVDDFAASVEIIKQVCAENSVTHLFYNYQYEVNERARDVQVERT 120 Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 L+ V+C+ FDDSV+LPPG+++ +MYKV+TPF+ A ++ L + + P +R +G Sbjct: 121 LR-NVLCEGFDDSVILPPGAVMTGNHEMYKVFTPFKNAWLKRLREGMPECVAAPKVRSSG 179 Query: 187 PVTPSNIPRFFDYPFQAIDP-MFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245 + P+ +YP Q+ D FP+ E+ A+ LR+FC+ Y +QRD PA++GTS+L Sbjct: 180 SIEPAPSITL-NYPRQSFDTAHFPVEEKAAIAQLRQFCQNGAGEYEQQRDFPAVEGTSRL 238 Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305 S L+ G LSPRQC +RL E L WLNELIWREFYRHLM +YPS+C + Sbjct: 239 SASLATGGLSPRQCLHRLLAEQPQALDGGAGSV--WLNELIWREFYRHLMTYYPSLCKHR 296 Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365 PFI WT++++W ++ +AW++G TG+PI+DAAMRQLN+ GWMHNRLRMITASFLVKDL Sbjct: 297 PFIVWTDRVQWQRNPAHFKAWQEGKTGYPIVDAAMRQLNSTGWMHNRLRMITASFLVKDL 356 Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425 L+DWR GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG++FD +G FI Sbjct: 357 LIDWREGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGEKFDREGEFI 416 Query: 426 RHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481 R WLPEL +VP + +H P W K ++L+YP PIVDHK+A TL Y A+K + Sbjct: 417 RRWLPELRDVPGKAVHEPWKWAQKAGVTLDYPQPIVDHKEARLRTLAAYEEARKGA 472 >gi|187734160|ref|YP_001879362.1| deoxyribodipyrimidine photolyase [Shigella boydii CDC 3083-94] gi|187431152|gb|ACD10426.1| deoxyribodipyrimidine photolyase [Shigella boydii CDC 3083-94] Length = 472 Score = 531 bits (1369), Expect = e-149, Method: Composition-based stats. Identities = 251/476 (52%), Positives = 330/476 (69%), Gaps = 5/476 (1%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M+ HLVW R DLR+ DN AL AAC NS A+V+A++IATP QW H +S RQ+ I A L Sbjct: 1 MTTHLVWFRQDLRLHDNLALAAACRNSSARVLALYIATPRQWATHNMSPRQAELINAQLN 60 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 +Q +L++KGI + + +F S+E + C + VT LFYN QYE+NE RD +E+ Sbjct: 61 GLQIALAEKGIPLLFREVDDFIASVEIVKQVCAENSVTHLFYNYQYEVNERARDVEVERA 120 Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 L+ V+C+ FDDSV+LPPG+++ +MYKV+TPF+ A ++ L + + P +R +G Sbjct: 121 LR-NVVCEGFDDSVILPPGAVMTGNHEMYKVFTPFKNAWLKRLREGMPECVAAPKVRSSG 179 Query: 187 PVTPSNIPRFFDYPFQAIDP-MFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245 + PS +YP Q+ D FP+ E+ A+ LR+FC+ Y +QRD PA++GTS+L Sbjct: 180 SIEPSPSITL-NYPRQSFDTAHFPVEEKAAIAQLRQFCQNGAGEYEQQRDFPAVEGTSRL 238 Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305 S L+ G LSPRQC +RL E L WL+ELIWREFYRHLM +YPS+C Sbjct: 239 SASLATGGLSPRQCLHRLLAEQPQALDGGAGSV--WLSELIWREFYRHLMTYYPSLCKHC 296 Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365 PFI WT++++W + LQAW++G TG+PI+DAAMRQLN+ GWMHNRLRMITASFLVKDL Sbjct: 297 PFIAWTDRVQWQSNPAHLQAWQEGKTGYPIVDAAMRQLNSTGWMHNRLRMITASFLVKDL 356 Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425 L+DWR GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG++FD +G FI Sbjct: 357 LIDWREGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGEKFDREGEFI 416 Query: 426 RHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481 R WLPEL +VP + +H P W K + L+YP PIVDHK+A TL Y A+K + Sbjct: 417 RRWLPELRDVPGKAVHEPWKWAQKAGVMLDYPQPIVDHKEARLRTLAAYEEARKGA 472 >gi|193070647|ref|ZP_03051584.1| deoxyribodipyrimidine photolyase [Escherichia coli E110019] gi|260866839|ref|YP_003233241.1| deoxyribodipyrimidine photolyase, FAD-binding [Escherichia coli O111:H- str. 11128] gi|300906963|ref|ZP_07124633.1| FAD binding domain of DNA photolyase [Escherichia coli MS 84-1] gi|301305193|ref|ZP_07211291.1| FAD binding domain of DNA photolyase [Escherichia coli MS 124-1] gi|192956035|gb|EDV86501.1| deoxyribodipyrimidine photolyase [Escherichia coli E110019] gi|257763195|dbj|BAI34690.1| deoxyribodipyrimidine photolyase, FAD-binding [Escherichia coli O111:H- str. 11128] gi|300401266|gb|EFJ84804.1| FAD binding domain of DNA photolyase [Escherichia coli MS 84-1] gi|300839505|gb|EFK67265.1| FAD binding domain of DNA photolyase [Escherichia coli MS 124-1] gi|315257624|gb|EFU37592.1| FAD binding domain of DNA photolyase [Escherichia coli MS 85-1] gi|323180055|gb|EFZ65611.1| deoxyribodipyrimidine photo-lyase [Escherichia coli 1180] Length = 472 Score = 531 bits (1369), Expect = e-149, Method: Composition-based stats. Identities = 250/476 (52%), Positives = 330/476 (69%), Gaps = 5/476 (1%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M+ HLVW R DLR+ DN AL AAC NS A+V+A++IATP QW H +S RQ+ I A L Sbjct: 1 MTTHLVWFRQDLRLHDNLALAAACRNSSARVLALYIATPRQWATHNMSPRQAELINAQLN 60 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 +Q +L++KGI + + +F S+E + C + VT LFYN QYE+NE RD +E+ Sbjct: 61 GLQIALAEKGIPLLFREVDDFVASVEIVKQVCAENSVTHLFYNYQYEVNERARDVEVERA 120 Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 L+ V+C+ FDDSV+LPPG+++ +MYKV+TPF+ A ++ L + + P +R +G Sbjct: 121 LR-NVVCEGFDDSVILPPGAVMTGNHEMYKVFTPFKNAWLKRLREGMPECVAAPKVRSSG 179 Query: 187 PVTPSNIPRFFDYPFQAIDP-MFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245 + PS +YP Q+ D FP+ E+ A+ LR+FC+ Y +QRD PA++GTS+L Sbjct: 180 SIEPSPSITL-NYPRQSFDTAHFPVEEKAAIAQLRQFCQNGAGEYEQQRDFPAVEGTSRL 238 Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305 S L+ G LSPRQC +RL E L WL+ELIWREFYRHLM +YPS+C Sbjct: 239 SASLATGGLSPRQCLHRLLAEQPQALDGGAGSV--WLSELIWREFYRHLMTYYPSLCKHC 296 Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365 PFI WT++++W + LQAW++G TG+PI+DAAMRQLN+ GWMHNRLRMI+ASFLVKDL Sbjct: 297 PFIAWTDRVQWQSNPAHLQAWQEGKTGYPIVDAAMRQLNSTGWMHNRLRMISASFLVKDL 356 Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425 L+DWR GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG++FD +G FI Sbjct: 357 LIDWREGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGEKFDREGEFI 416 Query: 426 RHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481 R WLPEL +VP + +H P W K + L+YP PIVDHK+A TL Y A+K + Sbjct: 417 RRWLPELRDVPGKAVHEPWKWAQKAGVMLDYPQPIVDHKEARLRTLAAYEEARKGA 472 >gi|260853943|ref|YP_003227834.1| deoxyribodipyrimidine photolyase, FAD-binding [Escherichia coli O26:H11 str. 11368] gi|257752592|dbj|BAI24094.1| deoxyribodipyrimidine photolyase, FAD-binding [Escherichia coli O26:H11 str. 11368] gi|323153779|gb|EFZ40026.1| deoxyribodipyrimidine photo-lyase [Escherichia coli EPECa14] Length = 472 Score = 531 bits (1369), Expect = e-149, Method: Composition-based stats. Identities = 250/476 (52%), Positives = 329/476 (69%), Gaps = 5/476 (1%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M+ HLVW R DLR+ DN AL AAC NS A+V+A++IATP QW H +S RQ+ I A L Sbjct: 1 MTTHLVWFRQDLRLHDNLALAAACRNSSARVLALYIATPRQWATHNMSPRQAELINAQLN 60 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 +Q +L++KGI + + +F S+E + C + VT LFYN QYE+NE RD +E+ Sbjct: 61 GLQIALAEKGIPLLFREVDDFVASVEIVKQVCAENSVTHLFYNYQYEVNERARDVEVERA 120 Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 L+ V+C+ FDDSV+LPPG++ +MYKV+TPF+ A ++ L + + P +R +G Sbjct: 121 LR-NVVCEGFDDSVILPPGAVKTGNHEMYKVFTPFKNAWLKRLREGMPECVAAPKVRSSG 179 Query: 187 PVTPSNIPRFFDYPFQAIDP-MFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245 + PS +YP Q+ D FP+ E+ A+ LR+FC+ Y +QRD PA++GTS+L Sbjct: 180 SIEPSPSITL-NYPRQSFDTAHFPVEEKAAIAQLRQFCQNGAGEYEQQRDFPAVEGTSRL 238 Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305 S L+ G LSPRQC +RL E L WL+ELIWREFYRHLM +YPS+C Sbjct: 239 SASLATGGLSPRQCLHRLLAEQPQALDGGAGSV--WLSELIWREFYRHLMTYYPSLCKHC 296 Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365 PFI WT++++W + LQAW++G TG+PI+DAAMRQLN+ GWMHNRLRMI+ASFLVKDL Sbjct: 297 PFIAWTDRVQWQSNPAHLQAWQEGKTGYPIVDAAMRQLNSTGWMHNRLRMISASFLVKDL 356 Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425 L+DWR GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG++FD +G FI Sbjct: 357 LIDWREGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGEKFDREGEFI 416 Query: 426 RHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481 R WLPEL +VP + +H P W K + L+YP PIVDHK+A TL Y A+K + Sbjct: 417 RRWLPELRDVPGKAVHEPWKWAQKAGVMLDYPQPIVDHKEARLRTLAAYEEARKGA 472 >gi|161504129|ref|YP_001571241.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp. arizonae serovar 62:z4,z23:-- str. RSK2980] gi|160865476|gb|ABX22099.1| hypothetical protein SARI_02227 [Salmonella enterica subsp. arizonae serovar 62:z4,z23:--] Length = 473 Score = 531 bits (1368), Expect = e-149, Method: Composition-based stats. Identities = 255/476 (53%), Positives = 336/476 (70%), Gaps = 4/476 (0%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M HLVW R DLR+ DN AL AAC ++ A+V+A++IATP QW+ H ++ RQ+ FI A L Sbjct: 1 MPTHLVWFRRDLRLQDNLALAAACRDASARVLALYIATPAQWQAHDMAPRQAAFISAQLN 60 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 +Q +L++KGI +H+ ++F SIE + + C Q V+ LFYN +YE+NE +RD +EK Sbjct: 61 ALQTALAEKGIPLLFHEVADFSASIETVKNVCRQHDVSHLFYNYEYEVNERQRDAAVEKA 120 Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 LQ VIC+ FDDSV+LPPG+++ +MYKV+TPF+ A ++ L + +P P IR +G Sbjct: 121 LQS-VICEGFDDSVILPPGAVMTGNHEMYKVFTPFKNAWLKRLKEDIPPCVPAPKIRASG 179 Query: 187 PVTPSNIPRFFDYPFQAIDP-MFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245 ++ P +YP QA D +FP+ E A+ LR+FC + Y +RD PA++GTS+L Sbjct: 180 ALSTPLTPVSLNYPQQAFDAALFPVEENAAIAQLRQFCAQGADGYASRRDFPAVEGTSRL 239 Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305 S L+ G LSPRQC +RL E L WLNELIWREFYRHLM +YP++C + Sbjct: 240 SASLATGGLSPRQCLHRLLAEQPQALDGGPGSV--WLNELIWREFYRHLMTWYPALCKHQ 297 Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365 PFI WT+++ W ++ H QAW++G TG+PI+DAAMRQLN GWMHNRLRMITASFLVKDL Sbjct: 298 PFIRWTKRVTWQENPHYFQAWRKGETGYPIVDAAMRQLNATGWMHNRLRMITASFLVKDL 357 Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425 L+DWR+GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG+RFD G FI Sbjct: 358 LIDWRLGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGERFDRDGEFI 417 Query: 426 RHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481 R WLP L ++P + IH P W +K + L+YP PIVDHK+A TL+ Y AA+K Sbjct: 418 RQWLPALRDIPGKAIHEPWRWAEKAGVVLDYPRPIVDHKQARIATLSAYEAARKGG 473 >gi|293409079|ref|ZP_06652655.1| conserved hypothetical protein [Escherichia coli B354] gi|291469547|gb|EFF12031.1| conserved hypothetical protein [Escherichia coli B354] Length = 472 Score = 531 bits (1367), Expect = e-148, Method: Composition-based stats. Identities = 250/476 (52%), Positives = 336/476 (70%), Gaps = 5/476 (1%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M++HLVW R DLR+ DN AL AAC S A+V+A++IATP QW H +S RQ+ FI A L Sbjct: 1 MTIHLVWFRQDLRLHDNFALAAACRYSSARVLALYIATPRQWAAHNMSPRQAEFINAQLN 60 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 +Q +L++KGI +H+ +F S+E ++ C + RVT LFYN QYE+NE RD +E+ Sbjct: 61 GLQIALAEKGIPLLFHEVDDFAASVEIVEQVCAENRVTHLFYNYQYEVNERARDVQVERT 120 Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 L+ V+C+ FDDSV+LPPG+++ +MYKV+TPF+ A ++ L + + P +R +G Sbjct: 121 LR-NVVCEGFDDSVILPPGTVMTGNHEMYKVFTPFKNAWLKRLREGMPECVAAPKVRSSG 179 Query: 187 PVTPSNIPRFFDYPFQAIDP-MFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245 + P+ +YP Q D FP+ E+ A+ LR+FC+ Y +QRD PA++GTS+L Sbjct: 180 SIDPAPSITL-NYPRQPFDTAHFPVEEKAAIAQLRQFCQNGAGEYEQQRDFPAVEGTSRL 238 Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305 S L+ G LSPRQC +RL E L WLNELIWREFYRHL+ ++PS+C + Sbjct: 239 SASLATGGLSPRQCLHRLLAEQPQALDGGAGSV--WLNELIWREFYRHLITYHPSLCKHR 296 Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365 PFI WT++++W ++ +AW++G TG+PI+DAAMRQLN+ GWMHNRLRMITASFLVKDL Sbjct: 297 PFIVWTDRVQWQRNPTHFKAWQEGKTGYPIVDAAMRQLNSTGWMHNRLRMITASFLVKDL 356 Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425 L+DWR GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG++FD +G FI Sbjct: 357 LIDWREGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGEKFDREGEFI 416 Query: 426 RHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481 R WLPEL NVP + +H P W +K ++L+YP PIVDHK+A TL Y A+K + Sbjct: 417 RQWLPELRNVPGKAVHEPWKWAEKAGVTLDYPQPIVDHKEARLRTLAAYEEARKGA 472 >gi|261822355|ref|YP_003260461.1| deoxyribodipyrimidine photolyase [Pectobacterium wasabiae WPP163] gi|261606368|gb|ACX88854.1| Deoxyribodipyrimidine photo-lyase [Pectobacterium wasabiae WPP163] Length = 492 Score = 531 bits (1367), Expect = e-148, Method: Composition-based stats. Identities = 274/476 (57%), Positives = 351/476 (73%), Gaps = 2/476 (0%) Query: 4 TTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYA 63 TT + H+VWLRNDLR+TDN AL+AAC N +A V+AVFIATP QW+QH ++ Q+ F+ Sbjct: 2 TTPVVTHVVWLRNDLRVTDNLALHAACQNPNATVLAVFIATPAQWKQHDMAPHQATFLLD 61 Query: 64 SLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLL 123 +L VQ++L++KGI YH+C++F S++WL +C QQ+ T LFYN QYEINE RDK + Sbjct: 62 NLTLVQQALAEKGIPLHYHECADFAASVDWLVQFCAQQQATDLFYNHQYEINERLRDKQV 121 Query: 124 EKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIR 183 + RL V+C + DS+LLPPGS+L +MYKV+TPFR+A I+ L++AD +P P +R Sbjct: 122 KDRLTDSVVCHGYHDSLLLPPGSVLTGNGEMYKVFTPFRQAFIKRLLEADTMCVPAPDVR 181 Query: 184 LTGPVTPSNIPRFFDYP-FQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGT 242 P+ + F YP + + FP GE+ AL LR+FC+E+V Y +QRD PA GT Sbjct: 182 -GEPINNTVAFVPFSYPRVEVNNDDFPCGERAALQQLRRFCREQVQDYDQQRDFPAQPGT 240 Query: 243 SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVC 302 S+LSPYL++G++SPRQC+NRL+ E ++L + + GAF+W NEL+WREFYRHL+ +P +C Sbjct: 241 SKLSPYLALGIVSPRQCFNRLRTECPEMLERREGGAFTWFNELVWREFYRHLIVSWPLLC 300 Query: 303 MGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLV 362 +PF WT+ ++W + L AW+QG TG+PI+DAAMRQLN GWMHNRLRMI ASFLV Sbjct: 301 KHRPFTAWTQWVKWRESPEDLAAWQQGKTGYPIVDAAMRQLNETGWMHNRLRMICASFLV 360 Query: 363 KDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQG 422 KDLL+DWR GE YFMSQLLDGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG+RFDP+G Sbjct: 361 KDLLIDWREGERYFMSQLLDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGERFDPEG 420 Query: 423 TFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478 FIRHWLPEL VP + IH PH W DK LNYP PIVDHK A TL + AAK Sbjct: 421 RFIRHWLPELAIVPDKDIHQPHRWADKQHFKLNYPQPIVDHKTARQDTLAAFEAAK 476 >gi|300816355|ref|ZP_07096577.1| FAD binding domain of DNA photolyase [Escherichia coli MS 107-1] gi|300531045|gb|EFK52107.1| FAD binding domain of DNA photolyase [Escherichia coli MS 107-1] Length = 472 Score = 531 bits (1367), Expect = e-148, Method: Composition-based stats. Identities = 249/476 (52%), Positives = 329/476 (69%), Gaps = 5/476 (1%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M HLVW R DLR+ DN AL AAC NS A+V+A++IATP QW H +S RQ+ I A L Sbjct: 1 MITHLVWFRQDLRLHDNLALAAACRNSSARVLALYIATPRQWATHNMSPRQAELINAQLN 60 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 +Q +L++KGI + + +F S+E + C + VT LFYN QYE+NE RD +E+ Sbjct: 61 GLQIALAEKGIPLLFREVDDFVASVEIVKQVCAENSVTHLFYNYQYEVNERARDVEVERA 120 Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 L+ V+C+ FDDSV+LPPG+++ +MYKV+TPF+ A ++ L + + P +R +G Sbjct: 121 LR-NVVCEGFDDSVILPPGAVMTGNHEMYKVFTPFKNAWLKRLREGMPECVAAPKVRSSG 179 Query: 187 PVTPSNIPRFFDYPFQAIDP-MFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245 + P+ +YP Q+ D FP+ E+ A+ LR+FC+ Y +QRD PA++GTS+L Sbjct: 180 SIEPAPSITL-NYPRQSFDTAHFPVEEKAAIAQLRQFCQNGAGEYEQQRDFPAVEGTSRL 238 Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305 S L+ G LSPRQC +RL E L WL+ELIWREFYRHLM +YPS+C + Sbjct: 239 SASLATGGLSPRQCLHRLLAEQPQALDGGAGSV--WLSELIWREFYRHLMTYYPSLCKHR 296 Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365 PFI WT++++W + LQAW++G TG+PI+DAAMRQLN+ GWMHNRLRMITASFLVKDL Sbjct: 297 PFIAWTDRVQWQSNPAHLQAWQKGKTGYPIVDAAMRQLNSTGWMHNRLRMITASFLVKDL 356 Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425 L+DWR GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNP QG++FD +G FI Sbjct: 357 LIDWREGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPITQGEKFDREGEFI 416 Query: 426 RHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481 R WLPEL +VP + +H P W K + L+YP PIVDHK+A TL Y A+K + Sbjct: 417 RRWLPELRDVPGKAVHEPWKWAQKAGVKLDYPQPIVDHKEARLRTLAAYEEARKGA 472 >gi|218704025|ref|YP_002411544.1| deoxyribodipyrimidine photolyase [Escherichia coli UMN026] gi|293403952|ref|ZP_06647946.1| deoxyribodipyrimidine photolyase [Escherichia coli FVEC1412] gi|298379728|ref|ZP_06989333.1| deoxyribodipyrimidine photo-lyase [Escherichia coli FVEC1302] gi|300900701|ref|ZP_07118851.1| FAD binding domain of DNA photolyase [Escherichia coli MS 198-1] gi|218431122|emb|CAR11998.1| deoxyribodipyrimidine photolyase, FAD-binding [Escherichia coli UMN026] gi|291428538|gb|EFF01563.1| deoxyribodipyrimidine photolyase [Escherichia coli FVEC1412] gi|298279426|gb|EFI20934.1| deoxyribodipyrimidine photo-lyase [Escherichia coli FVEC1302] gi|300355813|gb|EFJ71683.1| FAD binding domain of DNA photolyase [Escherichia coli MS 198-1] Length = 472 Score = 530 bits (1366), Expect = e-148, Method: Composition-based stats. Identities = 250/476 (52%), Positives = 332/476 (69%), Gaps = 5/476 (1%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M+ HLVW R DLR+ DN AL AAC NS A+V+A++IATP QW H +S RQ+ I A L Sbjct: 1 MTTHLVWFRQDLRLHDNLALAAACRNSSARVLALYIATPRQWATHNMSPRQAKLINAQLN 60 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 ++ +L++KGI + + +F S+E + C + VT LFYN QYE+NE RD +E+ Sbjct: 61 GLRIALAEKGIPLLFREVDDFAASVEIIKQVCAENSVTHLFYNYQYEVNERARDVEVERA 120 Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 L+ V+C+ FDDSV+LPPG+++ +MYKV+TPF+ A ++ L + + P +R +G Sbjct: 121 LR-NVVCEGFDDSVILPPGAVMTGNHEMYKVFTPFKNAWLKRLREGMPECVAAPKVRSSG 179 Query: 187 PVTPSNIPRFFDYPFQAIDP-MFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245 + P+ +YP Q D FP+ E+ A+ LR+FC+ Y +QRD PA++GTS+L Sbjct: 180 MIEPAPSITL-NYPRQPFDTAHFPVEEKAAIAQLRQFCQSGAGEYEQQRDFPAVEGTSRL 238 Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305 S L+ G LSPRQC +RL E L WLNELIWREFYRHLM +YPS+C + Sbjct: 239 SASLATGGLSPRQCLHRLLAEQPQALEGGAGSV--WLNELIWREFYRHLMTYYPSLCKHR 296 Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365 PFI WT++++W ++ LQAW++G TG+PI+DAAMRQLN+ GWMHNRLRMITASFLVKDL Sbjct: 297 PFIVWTDRVQWQRNPAHLQAWQEGKTGYPIVDAAMRQLNSTGWMHNRLRMITASFLVKDL 356 Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425 L+DWR GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG++FD +G FI Sbjct: 357 LIDWREGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGEKFDREGEFI 416 Query: 426 RHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481 R WLPEL +VP + +H P W K ++L+YP PIVDHK+A TL Y A+K + Sbjct: 417 RRWLPELRDVPGKAVHEPWKWAQKAGVTLDYPQPIVDHKEARLRTLAAYEEARKGA 472 >gi|301647446|ref|ZP_07247253.1| FAD binding domain of DNA photolyase [Escherichia coli MS 146-1] gi|301074420|gb|EFK89226.1| FAD binding domain of DNA photolyase [Escherichia coli MS 146-1] Length = 472 Score = 530 bits (1366), Expect = e-148, Method: Composition-based stats. Identities = 250/474 (52%), Positives = 331/474 (69%), Gaps = 5/474 (1%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M+ HLVW R DLR+ DN AL AAC NS A+V+A++IATP QW H +S RQ+ I A L Sbjct: 1 MTTHLVWFRQDLRLHDNLALAAACRNSSARVLALYIATPRQWATHNMSPRQAELINAQLN 60 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 +Q +L++KGI + + +F S+E + C + VT LFYN QYE+NE RD +E+ Sbjct: 61 GLQIALAEKGIPLLFREVDDFVASVEIVKQVCAENSVTHLFYNYQYEVNERARDVEVERA 120 Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 L+ V+C+ FDDSV+LPPG+++ +MYKV+TPF+ A ++ L + + P +R +G Sbjct: 121 LR-NVVCEGFDDSVILPPGAVMTGNHEMYKVFTPFKNAWLKRLREGMPECVAAPKVRSSG 179 Query: 187 PVTPSNIPRFFDYPFQAIDP-MFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245 + PS +YP Q+ D FP+ E+ A+ LR+FC+ Y +QRD PA++GTS+L Sbjct: 180 SIEPSPSITL-NYPRQSFDTAHFPVEEKAAIAQLRQFCQNGAGEYEQQRDFPAVEGTSRL 238 Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305 S L+ G LSPRQC +RL E L WLNELIWREFYRHL+ ++PS+C + Sbjct: 239 SASLATGGLSPRQCLHRLLAEQPQALDGGAGSV--WLNELIWREFYRHLITYHPSLCKHR 296 Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365 PFI WT++++W + LQAW++G TG+PI+DAAMRQLN+ GWMHNRLRMITASFLVKDL Sbjct: 297 PFIAWTDRVQWQSNPAHLQAWQEGKTGYPIVDAAMRQLNSTGWMHNRLRMITASFLVKDL 356 Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425 L+DWR GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG++FD G FI Sbjct: 357 LIDWREGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGEKFDQGGEFI 416 Query: 426 RHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479 R WLPEL +VP + +H P W K ++L+YP PIV+HK+A TL Y AA+K Sbjct: 417 RQWLPELRDVPGKVVHEPWKWAQKAGVTLDYPQPIVEHKEARVQTLAAYEAARK 470 >gi|300918366|ref|ZP_07134966.1| FAD binding domain of DNA photolyase [Escherichia coli MS 115-1] gi|300414429|gb|EFJ97739.1| FAD binding domain of DNA photolyase [Escherichia coli MS 115-1] Length = 472 Score = 530 bits (1366), Expect = e-148, Method: Composition-based stats. Identities = 249/474 (52%), Positives = 330/474 (69%), Gaps = 5/474 (1%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M+ HLVW R DLR+ DN AL AAC NS A+V+A++IATP QW H +S RQ+ I A L Sbjct: 1 MTTHLVWFRQDLRLHDNLALAAACRNSSARVLALYIATPRQWATHNMSPRQAELINAQLN 60 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 +Q +L++KGI + + +F S+E + C + VT LFYN QYE+NE RD +E+ Sbjct: 61 GLQIALAEKGIPLLFREVDDFVASVEIVKQVCAENSVTHLFYNYQYEVNERARDVEVERA 120 Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 L+ V+C+ FDDSV+LPPG+++ +MYKV+TPF+ A ++ L + + P +R +G Sbjct: 121 LR-NVVCEGFDDSVILPPGAVMTGNHEMYKVFTPFKNAWLKRLREGMPECVAAPKVRSSG 179 Query: 187 PVTPSNIPRFFDYPFQAIDP-MFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245 + P+ +YP Q+ D FP+ E+ A+ LR+FC+ Y +QRD PA++GTS+L Sbjct: 180 SIKPAPSITL-NYPRQSFDTAHFPVEEKAAIAQLRQFCQNGAGEYEQQRDFPAVEGTSRL 238 Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305 S L+ G LSPRQC +RL E L WL+ELIWREFYRHLM +YPS+C Sbjct: 239 SASLATGGLSPRQCLHRLLAEQPQALDGGAGSV--WLSELIWREFYRHLMTYYPSLCKHC 296 Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365 PFI WT++++W + LQAW++G TG+PI+DAAMRQLN+ GWMHNRLRMITASFLVKDL Sbjct: 297 PFIAWTDRVQWQSNPAHLQAWQEGKTGYPIVDAAMRQLNSTGWMHNRLRMITASFLVKDL 356 Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425 L+DWR GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNP QG++FD +G FI Sbjct: 357 LIDWREGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPITQGEKFDHEGEFI 416 Query: 426 RHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479 R WLPEL +VP + +H P W K ++L+YP PIV+HK+A TL Y AA+K Sbjct: 417 RQWLPELRDVPGKVVHEPWKWAQKAGVTLDYPQPIVEHKEARVQTLAAYEAARK 470 >gi|191167217|ref|ZP_03029036.1| deoxyribodipyrimidine photolyase [Escherichia coli B7A] gi|309797420|ref|ZP_07691812.1| FAD binding domain of DNA photolyase [Escherichia coli MS 145-7] gi|190902765|gb|EDV62495.1| deoxyribodipyrimidine photolyase [Escherichia coli B7A] gi|308118944|gb|EFO56206.1| FAD binding domain of DNA photolyase [Escherichia coli MS 145-7] Length = 472 Score = 530 bits (1365), Expect = e-148, Method: Composition-based stats. Identities = 249/476 (52%), Positives = 330/476 (69%), Gaps = 5/476 (1%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M+ HLVW R DLR+ DN AL AAC NS A+V+A++IATP QW H +S RQ+ I A L Sbjct: 1 MTTHLVWFRQDLRLHDNLALAAACRNSSARVLALYIATPRQWATHNMSPRQAELINAQLN 60 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 +Q +L++KGI + + +F S+E + C + VT LFYN QYE+NE RD +E+ Sbjct: 61 GLQIALAEKGIPLLFREVDDFVASVEIVKQVCAENSVTHLFYNYQYEVNERARDVEVERA 120 Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 L+ V+C+ FDDSV+LPPG+++ +MYKV+TPF+ A ++ L + + P +R +G Sbjct: 121 LR-NVVCEGFDDSVILPPGAVMTGNHEMYKVFTPFKNAWLKRLREGMPECVAAPKVRSSG 179 Query: 187 PVTPSNIPRFFDYPFQAIDP-MFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245 + P+ +YP Q+ D FP+ E+ A+ LR+FC+ Y +QRD PA++GTS+L Sbjct: 180 SIEPAPSITL-NYPRQSFDTAHFPVEEKAAIAQLRQFCQNGAGEYEQQRDFPAVEGTSRL 238 Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305 S L+ G LSPRQC +RL E L WL+ELIWREFYRHLM +YPS+C Sbjct: 239 SASLATGGLSPRQCLHRLLAEQPQALDGGAGSV--WLSELIWREFYRHLMTYYPSLCKHC 296 Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365 PFI WT++++W + LQAW++G TG+PI+DAAMRQLN+ GWMHNRLRMI+ASFLVKDL Sbjct: 297 PFIAWTDRVQWQSNPAHLQAWQEGKTGYPIVDAAMRQLNSTGWMHNRLRMISASFLVKDL 356 Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425 L+DWR GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG++FD +G FI Sbjct: 357 LIDWREGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGEKFDREGEFI 416 Query: 426 RHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481 R WLPEL +VP + +H P W K + L+YP PIVDHK+A TL Y A+K + Sbjct: 417 RRWLPELRDVPGKAVHEPWKWAQKAGVMLDYPQPIVDHKEARLRTLAAYEEARKGA 472 >gi|323976322|gb|EGB71412.1| DNA photolyase [Escherichia coli TW10509] Length = 472 Score = 530 bits (1365), Expect = e-148, Method: Composition-based stats. Identities = 253/474 (53%), Positives = 336/474 (70%), Gaps = 5/474 (1%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M+ HLVW R DLR+ DN AL AAC S A+V+A++IATP QW H +S RQ+ FI A L Sbjct: 1 MTTHLVWFRQDLRLHDNLALAAACRYSSARVLALYIATPRQWAAHNMSPRQAEFINAQLN 60 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 +Q +L++KGI +H+ +F S+E + C + RVT LFYN QYE+NE RD +E+ Sbjct: 61 GLQIALAEKGIPLLFHEVDDFAASVEIVKQVCAENRVTHLFYNYQYEVNERARDVQVERT 120 Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 L+ V+C+ FDDSV+LPPG+++ +MYKV+TPF+ A ++ L + + P +R +G Sbjct: 121 LR-NVVCEGFDDSVILPPGAVMTGNHEMYKVFTPFKNAWLKRLREGGPECVAAPKVRSSG 179 Query: 187 PVTPSNIPRFFDYPFQAIDP-MFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245 + P+ +YP Q+ D FP+ E+ A+ LR+FC+ Y +QRD PA++GTS+L Sbjct: 180 SIEPAPSITL-NYPRQSFDTAHFPVEEKAAIAQLRQFCQNGAGEYEQQRDFPAVEGTSRL 238 Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305 S L+ G LSPRQC +RL E L WLNELIWREFYRHLM ++PS+C + Sbjct: 239 SASLATGGLSPRQCLHRLLAEQPQALDGGAGSV--WLNELIWREFYRHLMTYHPSLCKHR 296 Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365 PFI WT++++W + L+AW++G TG+PI+DAAMRQLN+ GWMHNRLRMITASFLVKDL Sbjct: 297 PFIAWTDRVQWQSNPAHLKAWQEGKTGYPIVDAAMRQLNSSGWMHNRLRMITASFLVKDL 356 Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425 L+DWR GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG++FD +G FI Sbjct: 357 LIDWREGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGEKFDREGEFI 416 Query: 426 RHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479 R WLPEL +VP + +H P W DK+ ++L+YP PIVDHK+A TL Y AA+K Sbjct: 417 RRWLPELRDVPGKAVHEPWKWADKSGVTLDYPQPIVDHKEARVRTLAAYEAARK 470 >gi|16128683|ref|NP_415236.1| deoxyribodipyrimidine photolyase, FAD-binding [Escherichia coli str. K-12 substr. MG1655] gi|89107566|ref|AP_001346.1| deoxyribodipyrimidine photolyase, FAD-binding [Escherichia coli str. K-12 substr. W3110] gi|157160187|ref|YP_001457505.1| deoxyribodipyrimidine photolyase [Escherichia coli HS] gi|170080375|ref|YP_001729695.1| deoxyribodipyrimidine photolyase, FAD-binding [Escherichia coli str. K-12 substr. DH10B] gi|188495323|ref|ZP_03002593.1| deoxyribodipyrimidine photolyase [Escherichia coli 53638] gi|238899973|ref|YP_002925769.1| deoxyribodipyrimidine photolyase, FAD-binding [Escherichia coli BW2952] gi|256023690|ref|ZP_05437555.1| deoxyribodipyrimidine photolyase [Escherichia sp. 4_1_40B] gi|300947213|ref|ZP_07161423.1| FAD binding domain of DNA photolyase [Escherichia coli MS 116-1] gi|301027120|ref|ZP_07190490.1| FAD binding domain of DNA photolyase [Escherichia coli MS 196-1] gi|307137319|ref|ZP_07496675.1| deoxyribodipyrimidine photolyase [Escherichia coli H736] gi|331641209|ref|ZP_08342344.1| deoxyribodipyrimidine photo-lyase (DNA photolyase)(Photoreactivating enzyme) [Escherichia coli H736] gi|130152|sp|P00914|PHR_ECOLI RecName: Full=Deoxyribodipyrimidine photo-lyase; AltName: Full=DNA photolyase; AltName: Full=Photoreactivating enzyme gi|147268|gb|AAA24388.1| deoxyribopyrimidine photolyase [Escherichia coli] gi|1651311|dbj|BAA35367.1| deoxyribodipyrimidine photolyase, FAD-binding [Escherichia coli str. K12 substr. W3110] gi|1786926|gb|AAC73802.1| deoxyribodipyrimidine photolyase, FAD-binding [Escherichia coli str. K-12 substr. MG1655] gi|6006450|emb|CAB56782.1| DNA photolyase [Escherichia coli str. K-12 substr. W3110] gi|157065867|gb|ABV05122.1| deoxyribodipyrimidine photolyase [Escherichia coli HS] gi|169888210|gb|ACB01917.1| deoxyribodipyrimidine photolyase, FAD-binding [Escherichia coli str. K-12 substr. DH10B] gi|188490522|gb|EDU65625.1| deoxyribodipyrimidine photolyase [Escherichia coli 53638] gi|238860746|gb|ACR62744.1| deoxyribodipyrimidine photolyase, FAD-binding [Escherichia coli BW2952] gi|260450139|gb|ACX40561.1| Deoxyribodipyrimidine photo-lyase [Escherichia coli DH1] gi|299879409|gb|EFI87620.1| FAD binding domain of DNA photolyase [Escherichia coli MS 196-1] gi|300453199|gb|EFK16819.1| FAD binding domain of DNA photolyase [Escherichia coli MS 116-1] gi|309700930|emb|CBJ00227.1| deoxyribodipyrimidine photolyase [Escherichia coli ETEC H10407] gi|315135364|dbj|BAJ42523.1| deoxyribodipyrimidine photolyase [Escherichia coli DH1] gi|315614653|gb|EFU95294.1| deoxyribodipyrimidine photo-lyase [Escherichia coli 3431] gi|323938286|gb|EGB34543.1| DNA photolyase [Escherichia coli E1520] gi|323942969|gb|EGB39132.1| DNA photolyase [Escherichia coli E482] gi|331038007|gb|EGI10227.1| deoxyribodipyrimidine photo-lyase (DNA photolyase)(Photoreactivating enzyme) [Escherichia coli H736] gi|332342043|gb|AEE55377.1| deoxyribodipyrimidine photo-lyase [Escherichia coli UMNK88] Length = 472 Score = 529 bits (1364), Expect = e-148, Method: Composition-based stats. Identities = 250/474 (52%), Positives = 332/474 (70%), Gaps = 5/474 (1%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M+ HLVW R DLR+ DN AL AAC NS A+V+A++IATP QW H +S RQ+ I A L Sbjct: 1 MTTHLVWFRQDLRLHDNLALAAACRNSSARVLALYIATPRQWATHNMSPRQAELINAQLN 60 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 +Q +L++KGI + + +F S+E + C + VT LFYN QYE+NE RD +E+ Sbjct: 61 GLQIALAEKGIPLLFREVDDFVASVEIVKQVCAENSVTHLFYNYQYEVNERARDVEVERA 120 Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 L+ V+C+ FDDSV+LPPG+++ +MYKV+TPF+ A ++ L + + P +R +G Sbjct: 121 LR-NVVCEGFDDSVILPPGAVMTGNHEMYKVFTPFKNAWLKRLREGMPECVAAPKVRSSG 179 Query: 187 PVTPSNIPRFFDYPFQAIDP-MFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245 + PS +YP Q+ D FP+ E+ A+ LR+FC+ Y +QRD PA++GTS+L Sbjct: 180 SIEPSPSITL-NYPRQSFDTAHFPVEEKAAIAQLRQFCQNGAGEYEQQRDFPAVEGTSRL 238 Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305 S L+ G LSPRQC +RL E L WLNELIWREFYRHL+ ++PS+C + Sbjct: 239 SASLATGGLSPRQCLHRLLAEQPQALDGGAGSV--WLNELIWREFYRHLITYHPSLCKHR 296 Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365 PFI WT++++W + LQAW++G TG+PI+DAAMRQLN+ GWMHNRLRMITASFLVKDL Sbjct: 297 PFIAWTDRVQWQSNPAHLQAWQEGKTGYPIVDAAMRQLNSTGWMHNRLRMITASFLVKDL 356 Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425 L+DWR GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG++FD +G FI Sbjct: 357 LIDWREGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGEKFDHEGEFI 416 Query: 426 RHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479 R WLPEL +VP + +H P W K ++L+YP PIV+HK+A TL Y AA+K Sbjct: 417 RQWLPELRDVPGKVVHEPWKWAQKAGVTLDYPQPIVEHKEARVQTLAAYEAARK 470 >gi|157154932|ref|YP_001461868.1| deoxyribodipyrimidine photolyase [Escherichia coli E24377A] gi|218553235|ref|YP_002386148.1| deoxyribodipyrimidine photolyase [Escherichia coli IAI1] gi|218694131|ref|YP_002401798.1| deoxyribodipyrimidine photolyase [Escherichia coli 55989] gi|256021218|ref|ZP_05435083.1| deoxyribodipyrimidine photolyase [Shigella sp. D9] gi|300926110|ref|ZP_07141923.1| FAD binding domain of DNA photolyase [Escherichia coli MS 182-1] gi|301327896|ref|ZP_07221069.1| FAD binding domain of DNA photolyase [Escherichia coli MS 78-1] gi|332282445|ref|ZP_08394858.1| deoxyribodipyrimidine photolyase [Shigella sp. D9] gi|157076962|gb|ABV16670.1| deoxyribodipyrimidine photolyase [Escherichia coli E24377A] gi|218350863|emb|CAU96561.1| deoxyribodipyrimidine photolyase, FAD-binding [Escherichia coli 55989] gi|218360003|emb|CAQ97550.1| deoxyribodipyrimidine photolyase, FAD-binding [Escherichia coli IAI1] gi|300417809|gb|EFK01120.1| FAD binding domain of DNA photolyase [Escherichia coli MS 182-1] gi|300845580|gb|EFK73340.1| FAD binding domain of DNA photolyase [Escherichia coli MS 78-1] gi|323185134|gb|EFZ70500.1| deoxyribodipyrimidine photo-lyase [Escherichia coli 1357] gi|332104797|gb|EGJ08143.1| deoxyribodipyrimidine photolyase [Shigella sp. D9] Length = 472 Score = 529 bits (1364), Expect = e-148, Method: Composition-based stats. Identities = 249/476 (52%), Positives = 328/476 (68%), Gaps = 5/476 (1%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M HLVW R DLR+ DN AL AAC NS A+V+A++IATP QW H +S RQ+ I A L Sbjct: 1 MITHLVWFRQDLRLHDNLALAAACRNSSARVLALYIATPRQWATHNMSPRQAELINAQLN 60 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 +Q +L++KGI + + +F S+E + C + VT LFYN QYE+NE RD +E+ Sbjct: 61 GLQIALAEKGIPLLFREVDDFVASVEIVKQVCAENSVTHLFYNYQYEVNERARDVEVERA 120 Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 L+ V+C+ FDDSV+LPPG+++ +MYKV+TPF+ A ++ L + + P +R +G Sbjct: 121 LR-NVVCEGFDDSVILPPGAVMTGNHEMYKVFTPFKNAWLKRLREGMPECVAAPKVRSSG 179 Query: 187 PVTPSNIPRFFDYPFQAIDP-MFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245 + P+ +YP Q+ D FP+ E+ A+ LR+FC+ Y +QRD PA++GTS+L Sbjct: 180 SIEPAPSITL-NYPRQSFDTAHFPVEEKAAIAQLRQFCQNGAGEYEQQRDFPAVEGTSRL 238 Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305 S L+ G LSPRQC +RL E L WL+ELIWREFYRHLM +YPS+C Sbjct: 239 SASLATGGLSPRQCLHRLLAEQPQALDGGAGSV--WLSELIWREFYRHLMTYYPSLCKHC 296 Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365 PFI WT++++W + LQAW++G TG+PI+DAAMRQLN+ GWMHNRLRMITASFLVKDL Sbjct: 297 PFIAWTDRVQWQSNPAHLQAWQKGKTGYPIVDAAMRQLNSTGWMHNRLRMITASFLVKDL 356 Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425 L+DWR GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNP QG++FD +G FI Sbjct: 357 LIDWREGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPITQGEKFDREGEFI 416 Query: 426 RHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481 R WLPEL +VP + +H P W K + L+YP PIVDHK+A TL Y A+K + Sbjct: 417 RRWLPELRDVPGKAVHEPWKWAQKAGVKLDYPQPIVDHKEARLRTLAAYEEARKGA 472 >gi|329296060|ref|ZP_08253396.1| deoxyribodipyrimidine photolyase [Plautia stali symbiont] Length = 477 Score = 529 bits (1363), Expect = e-148, Method: Composition-based stats. Identities = 266/479 (55%), Positives = 342/479 (71%), Gaps = 6/479 (1%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 MS HLVWLRNDLRI DN AL AAC S A+V+A+FIATP QW+QH ++ +Q+ FI+ +L Sbjct: 1 MSTHLVWLRNDLRINDNSALAAACRESQAEVLALFIATPGQWQQHSMAPKQAAFIHQNLC 60 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 +Q+SL+++GI +HQC +F S+++L ++C Q +V LFYN QYEINE +RD +EK+ Sbjct: 61 LLQQSLAERGIKLHFHQCDDFAASVDYLATFCQQHKVDALFYNYQYEINERQRDAAVEKQ 120 Query: 127 LQHR-VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185 L + V+C+ FDDS+LLPPGS+ + M+KV+TPF KA I+ L Q P R Sbjct: 121 LDQQSVVCQGFDDSLLLPPGSVQTGSNSMFKVFTPFSKAFIRRLQQGLPECHHAPKARAR 180 Query: 186 GPVTPSNIPRFFDYPFQAIDPMF-PIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244 PV FDYP + D + P GE+ AL LR+F +++V Y +QRDIPAI GTS+ Sbjct: 181 APVAAGKKIAAFDYPLEEFDETWFPAGEEAALKQLRQFVQQRVEKYDQQRDIPAIDGTSR 240 Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304 LSPYL+IGVLSPRQC +R+ +E L A WLNEL+WREFYRHLM +P++C Sbjct: 241 LSPYLAIGVLSPRQCLHRILKEHPQAL--NNGSALVWLNELVWREFYRHLMVTFPALCKH 298 Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364 +PF+ WT + W ++ L AW+QG TG+PI+DAAMRQLNT+GWMHNRLRMITASFLVKD Sbjct: 299 QPFVDWTRNVSWQQNEQYLTAWQQGKTGYPIVDAAMRQLNTLGWMHNRLRMITASFLVKD 358 Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWA--ASTGNDSVPYFRIFNPTIQGKRFDPQG 422 LL+DWR GE YFM QL+DGDLA+NNGGWQWA TG D+ PYFRIFNPT QG+RFD QG Sbjct: 359 LLIDWREGERYFMQQLIDGDLAANNGGWQWAASTGTGTDAAPYFRIFNPTTQGERFDKQG 418 Query: 423 TFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481 FIR WLPEL +VP IH PH+W +KN+ L+YP PIV+HK A TL+ + A+ + Sbjct: 419 EFIRRWLPELQDVPDSAIHQPHAWAEKNNKKLDYPAPIVEHKAARKKTLDAFERARSAA 477 >gi|212711667|ref|ZP_03319795.1| hypothetical protein PROVALCAL_02742 [Providencia alcalifaciens DSM 30120] gi|212685769|gb|EEB45297.1| hypothetical protein PROVALCAL_02742 [Providencia alcalifaciens DSM 30120] Length = 477 Score = 529 bits (1363), Expect = e-148, Method: Composition-based stats. Identities = 269/477 (56%), Positives = 338/477 (70%), Gaps = 3/477 (0%) Query: 7 MSV-HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASL 65 MSV HLVW RNDLR+TDNKAL AC + A VI V+IATPEQW H +S RQ F++ +L Sbjct: 1 MSVCHLVWFRNDLRVTDNKALTFACEDPTATVIGVYIATPEQWATHNVSPRQIAFLHQNL 60 Query: 66 LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125 +++Q +L+++GI H + F DS++WL + QQ T L++N QYE+NE RD+ L + Sbjct: 61 VELQHALAKRGIPLICHTAATFADSVKWLLDFAQQQNATGLYFNHQYELNERLRDEQLRQ 120 Query: 126 RLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185 + QH I ++DD++LLPPGS+ MY+VYTPFR+A + L+ +D RS P P R Sbjct: 121 QSQHLNIL-TYDDALLLPPGSVTTQKGDMYQVYTPFRRAFLSQLMMSDFRSFPAPKPRGA 179 Query: 186 GPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245 + N F + P F GE AL LR+FC E+V Y RDIPAI GTSQL Sbjct: 180 A-LAVENTHPLFVHQSVETSPQFIAGEHAALAKLRQFCSERVQDYQRDRDIPAINGTSQL 238 Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305 SPYL++GVLSPRQC NRL E + +SG FSWLNELIWREFY HL+ +P +C + Sbjct: 239 SPYLALGVLSPRQCVNRLLAENPQVFDSQESGGFSWLNELIWREFYSHLLVAFPRLCRHQ 298 Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365 PFI WT+ I+WN D + AWK G TG+PI+DAAMRQLN GWMHNRLRMI ASFLVKDL Sbjct: 299 PFIKWTQHIQWNPDDAIFSAWKSGQTGYPIVDAAMRQLNQTGWMHNRLRMIVASFLVKDL 358 Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425 LVDWR GE YFMSQL+DG LA+NNGGWQW+ASTG D+ P+FRIFNPT QGK+FDPQGTFI Sbjct: 359 LVDWRKGEHYFMSQLIDGTLAANNGGWQWSASTGVDASPWFRIFNPTTQGKKFDPQGTFI 418 Query: 426 RHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQSL 482 R WLPEL +VP ++IH PH+W + + +SLNYP PIVDHK+A TL + A K++S+ Sbjct: 419 REWLPELRDVPEKFIHEPHTWAESHQVSLNYPTPIVDHKQARLMTLEAFEAGKRKSI 475 >gi|291281640|ref|YP_003498458.1| Deoxyribodipyrimidine photolyase [Escherichia coli O55:H7 str. CB9615] gi|209776604|gb|ACI86614.1| deoxyribodipyrimidine photolyase [Escherichia coli] gi|290761513|gb|ADD55474.1| Deoxyribodipyrimidine photolyase [Escherichia coli O55:H7 str. CB9615] gi|320654283|gb|EFX22336.1| deoxyribodipyrimidine photolyase [Escherichia coli O55:H7 str. 3256-97 TW 07815] gi|320659916|gb|EFX27458.1| deoxyribodipyrimidine photolyase [Escherichia coli O55:H7 str. USDA 5905] Length = 472 Score = 529 bits (1363), Expect = e-148, Method: Composition-based stats. Identities = 252/474 (53%), Positives = 331/474 (69%), Gaps = 5/474 (1%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M+ HLVW R DLR+ DN AL AAC NS A+V+A++IATP QW H +S RQ+ I A L Sbjct: 1 MTTHLVWFRQDLRLHDNLALAAACRNSSARVLALYIATPRQWAAHNMSPRQAELINAQLN 60 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 +Q +L++KGI + + +F S+E + C + VT LFYN QYE+NE RD +E+ Sbjct: 61 GLQIALAEKGIPLLFREVDDFAASVEIVKQVCAENSVTHLFYNYQYEVNERARDVQVERT 120 Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 L+ V+C+ FDDSV+LPPG+++ +MYKV+TPF+ A ++ L + + P +R +G Sbjct: 121 LR-NVVCEGFDDSVILPPGAVMTGNHEMYKVFTPFKNAWLKRLREGMPECVAAPKVRSSG 179 Query: 187 PVTPSNIPRFFDYPFQAIDP-MFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245 + P+ +YP Q+ D FP+ E+ A+ LR+FC+ Y +QRD PA++GTS+L Sbjct: 180 SIKPAPSITL-NYPRQSFDTAHFPVEEKAAIAQLRQFCQNGAGEYEQQRDFPAVEGTSRL 238 Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305 S L+ G LSPRQC +RL E L WLNELIWREFYRHLM +YPS+C Sbjct: 239 SASLATGGLSPRQCLHRLLAEQPQALDGGAGSV--WLNELIWREFYRHLMTYYPSLCKHC 296 Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365 PFI WT++++W + LQAW++G TG+PI+DAAMRQLN+ GWMHNRLRMITASFLVKDL Sbjct: 297 PFIAWTDRVQWQSNPAHLQAWQEGKTGYPIVDAAMRQLNSTGWMHNRLRMITASFLVKDL 356 Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425 L+DWR GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG++FD +G FI Sbjct: 357 LIDWREGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGEKFDREGEFI 416 Query: 426 RHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479 R WLPEL NVP + +H P W +K + L+YP PIV+HK+A TL Y AA+K Sbjct: 417 RQWLPELRNVPGKSVHEPWKWAEKAGVKLDYPQPIVEHKEARVQTLAAYEAARK 470 >gi|110640918|ref|YP_668646.1| deoxyribodipyrimidine photolyase [Escherichia coli 536] gi|191174072|ref|ZP_03035588.1| deoxyribodipyrimidine photolyase [Escherichia coli F11] gi|300996480|ref|ZP_07181454.1| FAD binding domain of DNA photolyase [Escherichia coli MS 200-1] gi|110342510|gb|ABG68747.1| deoxyribodipyrimidine photolyase [Escherichia coli 536] gi|190905680|gb|EDV65303.1| deoxyribodipyrimidine photolyase [Escherichia coli F11] gi|300304534|gb|EFJ59054.1| FAD binding domain of DNA photolyase [Escherichia coli MS 200-1] gi|324010431|gb|EGB79650.1| FAD binding domain of DNA photolyase [Escherichia coli MS 60-1] Length = 472 Score = 529 bits (1362), Expect = e-148, Method: Composition-based stats. Identities = 250/476 (52%), Positives = 332/476 (69%), Gaps = 5/476 (1%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M+ HLVW R DLR+ DN AL AAC NS A+V+A++IATP QW H +S RQ+ I L Sbjct: 1 MTTHLVWFRQDLRLHDNLALAAACRNSSARVLALYIATPRQWAAHNVSPRQAELINTQLN 60 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 +Q +L++KGI + + +F S+E + C + RVT LFYN QYE+NE RD E+ Sbjct: 61 ALQIALAEKGIPLLFREVDDFAASVEIVKQVCAEYRVTHLFYNYQYEVNERARDVQAERT 120 Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 L+ V+C+ FDDSV+LPPG+++ +MYKV+TPF+ A ++ L + + P +R +G Sbjct: 121 LR-NVVCEGFDDSVILPPGAVMTGNHEMYKVFTPFKNAWLKRLREGMPECVAAPKVRSSG 179 Query: 187 PVTPSNIPRFFDYPFQAIDP-MFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245 + P+ +YP Q+ D FP+ E+ A+ LR+FC Y +QRD PA++GTS+L Sbjct: 180 SIEPAPSITL-NYPRQSFDTAHFPVEEKAAIAQLRQFCLNGAGEYEQQRDFPAVEGTSRL 238 Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305 S L+ G LSPRQC +RL E +L WLNELIWREFYRHLM +YPS+C + Sbjct: 239 SASLATGGLSPRQCLHRLLAEQPQVLEGGPGSV--WLNELIWREFYRHLMTYYPSLCKHR 296 Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365 PFI WT++++W + L+AW++G TG+PI+DAAMRQLN+ GWMHNRLRMITASFLVKDL Sbjct: 297 PFIAWTDRVQWQSNPAHLKAWQEGKTGYPIVDAAMRQLNSTGWMHNRLRMITASFLVKDL 356 Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425 L+DWR GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG++FD +G FI Sbjct: 357 LIDWREGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGEKFDREGEFI 416 Query: 426 RHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481 R WLPEL +VP + +H P W +K ++L+YP PIVDHK+A TL Y A+K + Sbjct: 417 RQWLPELRDVPGKAVHEPWKWAEKTGVTLDYPQPIVDHKEARLRTLAAYEEARKGA 472 >gi|331662061|ref|ZP_08362984.1| deoxyribodipyrimidine photolyase [Escherichia coli TA143] gi|331060483|gb|EGI32447.1| deoxyribodipyrimidine photolyase [Escherichia coli TA143] Length = 472 Score = 528 bits (1361), Expect = e-148, Method: Composition-based stats. Identities = 253/476 (53%), Positives = 334/476 (70%), Gaps = 5/476 (1%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M+ HLVW R DLR DN AL AAC NS A+V+A++IATP QW H +S RQ+ I A L Sbjct: 1 MTTHLVWFRQDLRQHDNLALAAACRNSSARVLALYIATPRQWAAHNVSPRQAELINAQLN 60 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 +Q +L++KGI +H+ +F S+E + C + RVT+LFYN QYE+NE RD +E+ Sbjct: 61 GLQIALAEKGIPLLFHEVDDFAASVEIVKQVCAENRVTRLFYNYQYEVNERARDAQVERT 120 Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 L+ V+C+ FDDSV+LPPG+++ +MYKV+TPF+ A ++ L + + P +R +G Sbjct: 121 LR-NVVCEGFDDSVILPPGAVMTGNHEMYKVFTPFKNAWLKRLREGMPECVAAPKVRSSG 179 Query: 187 PVTPSNIPRFFDYPFQAIDP-MFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245 + P+ +YP Q D FP+ E+ A+ LR+FC+ Y +QRD PA++GTS+L Sbjct: 180 SIDPAPSITL-NYPRQPFDTAHFPVEEKAAIAQLRQFCQNGAGEYEQQRDFPAVEGTSRL 238 Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305 S L+ G LSPRQC +RL E L WL+ELIWREFYRHLM +YPS+C Sbjct: 239 SASLATGGLSPRQCLHRLLAEQPQALDGGAGSV--WLSELIWREFYRHLMTYYPSLCKHC 296 Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365 PFI WT++++W + LQAW++G TG+PI+DAAMRQLN+ GWMHNRLRMITASFLVKDL Sbjct: 297 PFIAWTDRVQWQSNPAHLQAWQEGKTGYPIVDAAMRQLNSTGWMHNRLRMITASFLVKDL 356 Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425 L+DWR GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG++FD +G FI Sbjct: 357 LIDWREGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGEKFDREGEFI 416 Query: 426 RHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481 R WLPEL +VP + +H P W DK+ ++L+YP PIVDHK+A TL Y A+K + Sbjct: 417 RQWLPELRDVPGKVVHEPWKWADKSGVTLDYPQPIVDHKEARLRTLAAYEEARKGA 472 >gi|271499741|ref|YP_003332766.1| Deoxyribodipyrimidine photo-lyase [Dickeya dadantii Ech586] gi|270343296|gb|ACZ76061.1| Deoxyribodipyrimidine photo-lyase [Dickeya dadantii Ech586] Length = 481 Score = 528 bits (1361), Expect = e-148, Method: Composition-based stats. Identities = 266/475 (56%), Positives = 346/475 (72%), Gaps = 1/475 (0%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M+ HLVW R+DLR+TDN AL+AAC + DA+V AVFIATP+QW H ++ Q+ F+ +L Sbjct: 1 MTTHLVWFRHDLRLTDNLALHAACQDPDARVEAVFIATPQQWASHDMAPCQAAFLLGNLR 60 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 +Q++L +KGI Y QC +F S+ WL +C +++VT+LFYNRQYE NE +RD L + Sbjct: 61 CLQQALQEKGIPLHYQQCDDFAASVRWLADFCRERQVTQLFYNRQYEWNERQRDGQLTQA 120 Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 L +C+ FDDS+LLPPGS++ + +MYKV+TPFR A I+ L D+ SLP P R G Sbjct: 121 LAGVTVCREFDDSLLLPPGSVVTGSGEMYKVFTPFRTAFIKRLQLQDVSSLPAPVTRQQG 180 Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246 VT + + FDYP + FP+GE A+ LR+FC+E+V +Y RD+PA TS+LS Sbjct: 181 DVTLAPLAP-FDYPQAEVHADFPVGEAAAVQRLRQFCREQVAFYHALRDLPARPATSKLS 239 Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP 306 PYL++G+LSPRQC+NRL+ E D L +P+ GAF+W NEL+WREFYRHL+ F PS+C +P Sbjct: 240 PYLALGILSPRQCFNRLRMEHPDWLSQPEGGAFTWFNELVWREFYRHLLVFSPSLCRHQP 299 Query: 307 FIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLL 366 FI WT ++ W L AW++G TG+PI+DAAMRQLN GWMHNRLRMI ASFLVKDLL Sbjct: 300 FIGWTRRVAWRHAPDELAAWQRGETGYPIVDAAMRQLNQTGWMHNRLRMICASFLVKDLL 359 Query: 367 VDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIR 426 +DWR GE YFMS+LLDGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG+RFDP G FIR Sbjct: 360 IDWREGERYFMSRLLDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGERFDPDGEFIR 419 Query: 427 HWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481 HW+PEL +P + +H PH W ++YP PIVDHK+A TL + AAK+++ Sbjct: 420 HWIPELAQIPGKAVHQPHDWAACQHRRIDYPAPIVDHKQARTRTLAAFEAAKQEA 474 >gi|170020947|ref|YP_001725901.1| deoxyribodipyrimidine photolyase [Escherichia coli ATCC 8739] gi|169755875|gb|ACA78574.1| Deoxyribodipyrimidine photo-lyase [Escherichia coli ATCC 8739] Length = 472 Score = 528 bits (1361), Expect = e-148, Method: Composition-based stats. Identities = 250/476 (52%), Positives = 329/476 (69%), Gaps = 5/476 (1%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M HLVW R DLR+ DN AL AAC NS A+V+A++IATP QW H +S RQ+ I A L Sbjct: 1 MITHLVWFRQDLRLHDNLALAAACRNSSARVLALYIATPRQWATHNMSPRQAELINAQLN 60 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 +Q +L++KGI + + +F S+E + C + VT LFYN QYE+NE RD +E+ Sbjct: 61 GLQIALAEKGIPLLFREVDDFVASVEIVKQVCAENSVTHLFYNYQYEVNERARDVEVERA 120 Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 L+ V+C+ FDDSV+LPPG+++ +MYKV+TPF+ A ++ L + + P +R +G Sbjct: 121 LR-NVVCEGFDDSVILPPGAVMTGNHEMYKVFTPFKNAWLKRLREGMPECVAAPKVRSSG 179 Query: 187 PVTPSNIPRFFDYPFQAIDP-MFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245 + P+ +YP Q+ D FP+ E+ A+ LR+FC+ Y +QRD PA++GTS+L Sbjct: 180 SIEPAPSITL-NYPRQSFDTAHFPVEEKAAIAQLRQFCQNGAGEYEQQRDFPAVEGTSRL 238 Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305 S L+ G LSPRQC +RL E L WL+ELIWREFYRHLM +YPS+C Sbjct: 239 SASLATGGLSPRQCLHRLLAEQPQALDGGAGSV--WLSELIWREFYRHLMTYYPSLCKHC 296 Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365 PFI WT++++W + LQAW++G TG+PI+DAAMRQLN+ GWMHNRLRMITASFLVKDL Sbjct: 297 PFIAWTDRVQWQSNPAHLQAWQEGKTGYPIVDAAMRQLNSTGWMHNRLRMITASFLVKDL 356 Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425 L+DWR GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG++FD +G FI Sbjct: 357 LIDWREGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGEKFDREGEFI 416 Query: 426 RHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481 R WLPEL +VP + +H P W K + L+YP PIVDHK+A TL Y A+K + Sbjct: 417 RRWLPELRDVPGKAVHEPWKWAQKAGVMLDYPQPIVDHKEARLRTLAAYEEARKGA 472 >gi|331651706|ref|ZP_08352725.1| deoxyribodipyrimidine photo-lyase (DNA photolyase)(Photoreactivating enzyme) [Escherichia coli M718] gi|331049984|gb|EGI22042.1| deoxyribodipyrimidine photo-lyase (DNA photolyase)(Photoreactivating enzyme) [Escherichia coli M718] Length = 472 Score = 528 bits (1361), Expect = e-148, Method: Composition-based stats. Identities = 250/474 (52%), Positives = 331/474 (69%), Gaps = 5/474 (1%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M+ HLVW R DLR+ DN AL AAC NS A+V+A++IATP QW H +S RQ+ I A L Sbjct: 1 MTTHLVWFRQDLRLHDNLALAAACRNSSARVLALYIATPRQWAAHNMSPRQAELINAQLN 60 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 +Q +L++KGI + + +F S+E + C + VT LFYN QYE+NE RD +E+ Sbjct: 61 GLQIALAEKGIPLLFREVDDFVASVELVKQVCAENSVTHLFYNYQYEVNERARDVDVERA 120 Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 L+ V+C+ FDDSV+LPPG+++ +MYKV+TPF+ A ++ L + + P +R +G Sbjct: 121 LR-NVVCEGFDDSVILPPGAVMTGNHEMYKVFTPFKNAWLKRLREGMPECVAAPKVRSSG 179 Query: 187 PVTPSNIPRFFDYPFQAIDP-MFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245 + P+ +YP Q+ D FP+ E+ A+ LR+FC+ Y +QRD PA++GTS+L Sbjct: 180 SIKPAPSITL-NYPRQSFDTAHFPVEEKAAIAQLRQFCQNGAGEYEQQRDFPAVEGTSRL 238 Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305 S L+ G LSPRQC +RL E L WL+ELIWREFYRHLM +YPS+C Sbjct: 239 SASLATGGLSPRQCLHRLLAEQPQALDGGAGSV--WLSELIWREFYRHLMTYYPSLCKHC 296 Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365 PFI WT++++W + LQAW++G TG+PI+DAAMRQLN+ GWMHNRLRMITASFLVKDL Sbjct: 297 PFIAWTDRVQWQSNPAHLQAWQEGKTGYPIVDAAMRQLNSTGWMHNRLRMITASFLVKDL 356 Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425 L+DWR GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG++FD +G FI Sbjct: 357 LIDWREGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGEKFDREGEFI 416 Query: 426 RHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479 R WLPEL +VP + +H P W +K + L+YP PIV+HK+A TL Y AA+K Sbjct: 417 RQWLPELRDVPGKVVHEPWKWAEKAGVKLDYPQPIVEHKEARVQTLAAYEAARK 470 >gi|292898878|ref|YP_003538247.1| deoxyribodipyrimidine photolyase [Erwinia amylovora ATCC 49946] gi|291198726|emb|CBJ45835.1| deoxyribodipyrimidine photolyase [Erwinia amylovora ATCC 49946] Length = 482 Score = 528 bits (1360), Expect = e-148, Method: Composition-based stats. Identities = 275/478 (57%), Positives = 348/478 (72%), Gaps = 5/478 (1%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M+ HLVWLRNDLRI DN ALYAAC + A VIA+FIATP+QWR H ++ +Q+ FI+ SL Sbjct: 1 MTTHLVWLRNDLRINDNHALYAACRSEQANVIALFIATPQQWRMHHMAPKQAEFIWQSLQ 60 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 VQ+SL+ KGIV QC +F S+ L +C + RV +LFYN QYE+NE +RD +E+ Sbjct: 61 DVQQSLAAKGIVLHVAQCDDFSASVTLLQDFCREHRVDRLFYNYQYEVNERQRDAAVERA 120 Query: 127 L-QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185 L + V+ + FDDS+LLPPGS+L +MYKV+TPF KA ++ L Q LP PA+R + Sbjct: 121 LFEDDVVSQGFDDSLLLPPGSVLTGNREMYKVFTPFSKAFVKRLQQGLPECLPAPAVRQS 180 Query: 186 GPVTPSN-IPRFFDYPFQAIDP-MFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS 243 G + P + FDYP + I+ +FP GE+ A+ LR+FC++ V Y +QRD+PA GTS Sbjct: 181 GAIEPEAGSLKPFDYPREDIESSLFPSGEKAAIARLREFCQQAVTDYPKQRDLPARDGTS 240 Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCM 303 +LS YL+ GVLSPRQC +RL ++ L + F WLNELIWREFYRHL+ +P++C Sbjct: 241 RLSVYLATGVLSPRQCLHRLLKQHPAGLEDSR--VFVWLNELIWREFYRHLLVAFPALCR 298 Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363 +PF WT ++W D L AW+QG TG+PI+DAAMRQLN++GWMHNRLRMITASFLVK Sbjct: 299 HQPFTRWTNSVKWRDDKQQLTAWQQGKTGYPIVDAAMRQLNSLGWMHNRLRMITASFLVK 358 Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423 DLL+DWR GE YFMSQLLDGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG+RFD G Sbjct: 359 DLLIDWREGERYFMSQLLDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGERFDKDGE 418 Query: 424 FIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481 FIR WLPEL VPT+YIH PH W KN +L+YPLP+VDHK+A TL+ + AA+K Sbjct: 419 FIRRWLPELRQVPTEYIHQPHQWARKNQRTLDYPLPLVDHKQARQQTLDVFEAARKNG 476 >gi|238762829|ref|ZP_04623797.1| Deoxyribodipyrimidine photo-lyase [Yersinia kristensenii ATCC 33638] gi|238698840|gb|EEP91589.1| Deoxyribodipyrimidine photo-lyase [Yersinia kristensenii ATCC 33638] Length = 481 Score = 528 bits (1360), Expect = e-148, Method: Composition-based stats. Identities = 283/477 (59%), Positives = 343/477 (71%), Gaps = 2/477 (0%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M+ HLVW RNDLR+TDN AL+AAC + A V+AVFIATP QW H ++ RQ+ F+ +L Sbjct: 1 MATHLVWFRNDLRLTDNLALHAACQDPQAIVMAVFIATPAQWAAHDMAPRQAAFLLQNLQ 60 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 +Q +L+++GI YHQC +F DSI WL+ +C QQ V LFYN+QYE+NE RD+ L + Sbjct: 61 LLQSALAERGIPLHYHQCDDFKDSITWLNDFCQQQPVDALFYNQQYELNERVRDEALMAQ 120 Query: 127 LQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185 L R I C F DSVLLPPG++L +MYKV+TPFR+A IQ L+ +D RS+P P R T Sbjct: 121 LSQRAIACHGFHDSVLLPPGTVLTGNNEMYKVFTPFRRAFIQRLMMSDCRSVPAPKARTT 180 Query: 186 GPVTPSNIPRFFDYPFQAID-PMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244 VTPS FDYP Q +D +FP GE+ AL LR+FC+E Y +QRD PAI GTS Sbjct: 181 AAVTPSQPLAPFDYPQQPVDNQLFPAGEEAALQRLRRFCREDAQDYQQQRDFPAIAGTSC 240 Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304 LSPYL++G+LSPRQC NRL+ E DLL + GAF WLNELIWREFYRHL+ YP +C Sbjct: 241 LSPYLALGILSPRQCVNRLRAECPDLLENVEGGAFIWLNELIWREFYRHLLVAYPRLCQH 300 Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364 PFI WT+ + WN L AW+QG TG+PI+DAAMRQLN GWMHNRLRMI+ASFLVKD Sbjct: 301 HPFISWTDAVIWNHSEQQLIAWQQGRTGYPIVDAAMRQLNETGWMHNRLRMISASFLVKD 360 Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424 LL+DWR GE YFMSQLLDGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG+RFD G F Sbjct: 361 LLIDWRHGERYFMSQLLDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGERFDKDGVF 420 Query: 425 IRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481 IR WLPEL VP IH P W ++ L+YP P+VDHK+A TL + AAK+ Sbjct: 421 IRRWLPELAAVPDSDIHQPWRWAERQQQPLDYPPPLVDHKQARLATLAAFEAAKRDG 477 >gi|312970785|ref|ZP_07784964.1| deoxyribodipyrimidine photo-lyase [Escherichia coli 1827-70] gi|310336546|gb|EFQ01713.1| deoxyribodipyrimidine photo-lyase [Escherichia coli 1827-70] Length = 472 Score = 528 bits (1360), Expect = e-148, Method: Composition-based stats. Identities = 249/476 (52%), Positives = 328/476 (68%), Gaps = 5/476 (1%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M HLVW R DLR+ DN AL AAC NS A+V+A++IATP QW H +S RQ+ I A L Sbjct: 1 MITHLVWFRQDLRLHDNLALAAACRNSSARVLALYIATPRQWATHNMSPRQAELINAQLN 60 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 +Q +L++KGI + + +F S+E + C + VT LFYN QYE+NE RD +E+ Sbjct: 61 GLQIALAEKGIPLLFREVDDFVASVEIVKQVCAENSVTHLFYNYQYEVNERARDVEVERA 120 Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 L+ V+C+ FD SV+LPPG+++ +MYKV+TPF+ A ++ L + + P +R +G Sbjct: 121 LR-NVVCEGFDGSVILPPGAVMTGNHEMYKVFTPFKNAWLKRLREGMPECVAAPKVRSSG 179 Query: 187 PVTPSNIPRFFDYPFQAIDP-MFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245 + P+ +YP Q+ D FP+ E+ A+ LR+FC+ Y +QRD PA++GTS+L Sbjct: 180 SIEPAPSITL-NYPRQSFDTAHFPVEEKAAIAQLRQFCQNGAGEYEQQRDFPAVEGTSRL 238 Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305 S L+ G LSPRQC +RL E L WL+ELIWREFYRHLM +YPS+C Sbjct: 239 SASLATGGLSPRQCLHRLLAEQPQALDGGAGSV--WLSELIWREFYRHLMTYYPSLCKHC 296 Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365 PFI WT++++W + LQAW++G TG+PI+DAAMRQLN+ GWMHNRLRMITASFLVKDL Sbjct: 297 PFIAWTDRVQWQSNPAHLQAWQEGKTGYPIVDAAMRQLNSTGWMHNRLRMITASFLVKDL 356 Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425 L+DWR GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG++FD +G FI Sbjct: 357 LIDWREGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGEKFDREGEFI 416 Query: 426 RHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481 R WLPEL +VP + +H P W K + L+YP PIVDHK+A TL Y A+K + Sbjct: 417 RRWLPELRDVPGKAVHEPWKWAQKAGVMLDYPQPIVDHKEARLRTLAAYEEARKGA 472 >gi|193065554|ref|ZP_03046622.1| deoxyribodipyrimidine photolyase [Escherichia coli E22] gi|194429065|ref|ZP_03061596.1| deoxyribodipyrimidine photolyase [Escherichia coli B171] gi|260842916|ref|YP_003220694.1| deoxyribodipyrimidine photolyase, FAD-binding [Escherichia coli O103:H2 str. 12009] gi|192926843|gb|EDV81469.1| deoxyribodipyrimidine photolyase [Escherichia coli E22] gi|194412896|gb|EDX29187.1| deoxyribodipyrimidine photolyase [Escherichia coli B171] gi|257758063|dbj|BAI29560.1| deoxyribodipyrimidine photolyase, FAD-binding [Escherichia coli O103:H2 str. 12009] gi|320198176|gb|EFW72780.1| Deoxyribodipyrimidine photolyase [Escherichia coli EC4100B] gi|323158756|gb|EFZ44769.1| deoxyribodipyrimidine photo-lyase [Escherichia coli E128010] Length = 472 Score = 528 bits (1360), Expect = e-148, Method: Composition-based stats. Identities = 249/476 (52%), Positives = 328/476 (68%), Gaps = 5/476 (1%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M HLVW R DLR+ DN AL AAC NS A+V+A++IATP QW H +S RQ+ I A L Sbjct: 1 MITHLVWFRQDLRLHDNLALAAACRNSSARVLALYIATPRQWATHNMSPRQAELINAQLN 60 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 +Q +L++KGI + + +F S+E + C + VT LFYN QYE+NE RD +E+ Sbjct: 61 GLQIALAEKGIPLLFREVDDFVASVEIVKQVCAENSVTHLFYNYQYEVNERARDVEVERA 120 Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 L+ V+C+ FDDSV+LPPG+++ +MYKV+TPF+ A ++ L + + P +R +G Sbjct: 121 LR-NVVCEGFDDSVILPPGAVMTGNHEMYKVFTPFKNAWLKRLREGMPECVAAPKVRSSG 179 Query: 187 PVTPSNIPRFFDYPFQAIDP-MFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245 + P+ +YP Q+ D FP+ E+ A+ LR+FC+ Y +QRD PA++GTS+L Sbjct: 180 SIEPAPSITL-NYPRQSFDTAHFPVEEKAAIAQLRQFCQNGAGEYEQQRDFPAVEGTSRL 238 Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305 S L+ G LSPRQC +RL E L WL+ELIWREFYRHLM +YPS+C Sbjct: 239 SASLATGGLSPRQCLHRLLAEQPQALDGGAGSV--WLSELIWREFYRHLMTYYPSLCKHC 296 Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365 PFI WT++++W + LQAW++G TG+PI+DAAMRQLN+ GWMHNRLRMITASFLVKDL Sbjct: 297 PFIAWTDRVQWQSNPAHLQAWQKGKTGYPIVDAAMRQLNSTGWMHNRLRMITASFLVKDL 356 Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425 L+DWR GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNP QG++FD +G FI Sbjct: 357 LIDWREGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPITQGEKFDREGEFI 416 Query: 426 RHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481 R WLPEL +VP + +H P W K + L+YP PIVDHK+A TL Y A+K + Sbjct: 417 RRWLPELRDVPGKAVHEPWKWAQKAGVMLDYPQPIVDHKEARLRTLAAYEEARKGA 472 >gi|194439253|ref|ZP_03071333.1| deoxyribodipyrimidine photolyase [Escherichia coli 101-1] gi|253774322|ref|YP_003037153.1| deoxyribodipyrimidine photolyase [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|254160778|ref|YP_003043886.1| deoxyribodipyrimidine photolyase [Escherichia coli B str. REL606] gi|300929490|ref|ZP_07144958.1| FAD binding domain of DNA photolyase [Escherichia coli MS 187-1] gi|194421838|gb|EDX37845.1| deoxyribodipyrimidine photolyase [Escherichia coli 101-1] gi|253325366|gb|ACT29968.1| Deoxyribodipyrimidine photo-lyase [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|253972679|gb|ACT38350.1| deoxyribodipyrimidine photolyase, FAD-binding [Escherichia coli B str. REL606] gi|253976873|gb|ACT42543.1| deoxyribodipyrimidine photolyase, FAD-binding [Escherichia coli BL21(DE3)] gi|300462599|gb|EFK26092.1| FAD binding domain of DNA photolyase [Escherichia coli MS 187-1] gi|313848579|emb|CAQ31174.2| deoxyribodipyrimidine photolyase (photoreactivation) [Escherichia coli BL21(DE3)] gi|323963088|gb|EGB58658.1| DNA photolyase [Escherichia coli H489] Length = 473 Score = 528 bits (1360), Expect = e-148, Method: Composition-based stats. Identities = 250/476 (52%), Positives = 329/476 (69%), Gaps = 5/476 (1%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M HLVW R DLR+ DN AL AAC NS A+V+A++IATP QW H +S RQ+ I A L Sbjct: 1 MITHLVWFRQDLRLHDNLALAAACRNSSARVLALYIATPRQWATHNMSPRQAELINAQLN 60 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 +Q +L++KGI + + +F S+E + C + VT LFYN QYE+NE RD +E+ Sbjct: 61 GLQIALAEKGIPLLFREVDDFVASVEIVKQVCAENSVTHLFYNYQYEVNERARDVEVERA 120 Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 L+ V+C+ FDDSV+LPPG+++ +MYKV+TPF+ A ++ L + + P +R +G Sbjct: 121 LR-NVVCEGFDDSVILPPGAVMTGNHEMYKVFTPFKNAWLKRLREGMPECVAAPKVRSSG 179 Query: 187 PVTPSNIPRFFDYPFQAIDP-MFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245 + P+ +YP Q+ D FP+ E+ A+ LR+FC+ Y +QRD PA++GTS+L Sbjct: 180 SIEPAPSITL-NYPRQSFDTAHFPVEEKAAIAQLRQFCQNGAGEYEQQRDFPAVEGTSRL 238 Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305 S L+ G LSPRQC +RL E L WL+ELIWREFYRHLM +YPS+C Sbjct: 239 SASLATGGLSPRQCLHRLLAEQPQALDGGAGSV--WLSELIWREFYRHLMTYYPSLCKHC 296 Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365 PFI WT++++W + LQAW++G TG+PI+DAAMRQLN+ GWMHNRLRMITASFLVKDL Sbjct: 297 PFIAWTDRVQWQSNPAHLQAWQEGKTGYPIVDAAMRQLNSTGWMHNRLRMITASFLVKDL 356 Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425 L+DWR GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG++FD +G FI Sbjct: 357 LIDWREGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGEKFDREGEFI 416 Query: 426 RHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481 R WLPEL +VP + +H P W K + L+YP PIVDHK+A TL Y A+K + Sbjct: 417 RRWLPELRDVPGKAVHEPWKWAQKAGVMLDYPQPIVDHKEARLRTLAAYEEARKGA 472 >gi|323971992|gb|EGB67212.1| DNA photolyase [Escherichia coli TA007] Length = 472 Score = 528 bits (1360), Expect = e-148, Method: Composition-based stats. Identities = 250/474 (52%), Positives = 331/474 (69%), Gaps = 5/474 (1%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M+ HLVW R DLR+ DN AL AAC NS A+V+A++IATP QW H +S RQ+ I A L Sbjct: 1 MTTHLVWFRQDLRLHDNLALAAACRNSSARVLALYIATPRQWATHNMSPRQAELINAQLN 60 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 +Q +L++KGI + + +F S+E + C + VT LFYN QYE+NE RD +E+ Sbjct: 61 GLQIALAEKGIPLLFREVDDFVASVEIVKQVCAENSVTHLFYNYQYEVNERARDVEVERA 120 Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 L+ V+C+ FDDSV+LPPG+++ +MYKV+TPF+ A ++ L + + P +R +G Sbjct: 121 LR-NVVCEGFDDSVILPPGAVMTGNHEMYKVFTPFKNAWLKRLREGMPECVAAPKVRSSG 179 Query: 187 PVTPSNIPRFFDYPFQAIDP-MFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245 + PS +YP Q+ D FP+ E+ A+ LR+FC+ Y +QRD PA++GTS+L Sbjct: 180 SIEPSPSITL-NYPRQSFDTAHFPVEEKAAIAQLRQFCQNGAGEYEQQRDFPAVEGTSRL 238 Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305 S L+ G LSPRQC +RL E L WLNELIWREFYRHL+ ++PS+C + Sbjct: 239 SASLATGGLSPRQCLHRLLAEQPQALDGGAGSV--WLNELIWREFYRHLITYHPSLCKHR 296 Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365 PFI WT++++W + LQAW++G TG+PI+DAAMRQLN+ GWMHNRLRMITASFLVKDL Sbjct: 297 PFIAWTDRVQWQSNPAHLQAWQEGKTGYPIVDAAMRQLNSTGWMHNRLRMITASFLVKDL 356 Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425 L DWR GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG++FD +G FI Sbjct: 357 LNDWREGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGEKFDHEGEFI 416 Query: 426 RHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479 R WLPEL +VP + +H P W K ++L+YP PIV+HK+A TL Y AA+K Sbjct: 417 RQWLPELRDVPGKVVHEPWKWAQKAGVTLDYPQPIVEHKEARVQTLAAYEAARK 470 >gi|307315377|ref|ZP_07594947.1| Deoxyribodipyrimidine photo-lyase [Escherichia coli W] gi|306905271|gb|EFN35815.1| Deoxyribodipyrimidine photo-lyase [Escherichia coli W] gi|315059950|gb|ADT74277.1| deoxyribodipyrimidine photolyase, FAD-binding protein [Escherichia coli W] gi|323379489|gb|ADX51757.1| Deoxyribodipyrimidine photo-lyase [Escherichia coli KO11] Length = 472 Score = 528 bits (1359), Expect = e-147, Method: Composition-based stats. Identities = 249/476 (52%), Positives = 329/476 (69%), Gaps = 5/476 (1%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M HLVW R DLR+ DN AL AAC NS A+V+A++IATP QW H +S RQ+ I A L Sbjct: 1 MITHLVWFRQDLRLHDNLALAAACRNSSARVLALYIATPRQWATHNMSPRQAELINAQLN 60 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 +Q +L++KGI + + +F S+E + C + VT LFYN QYE+NE RD +E+ Sbjct: 61 GLQIALAEKGIPLLFREVDDFVASVEIVKQVCAENSVTHLFYNYQYEVNERARDVEVERA 120 Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 L+ V+C+ FDDSV+LPPG+++ +MYKV+TPF+ A ++ L + + P +R +G Sbjct: 121 LR-NVVCEGFDDSVILPPGAVMTGNHEMYKVFTPFKNAWLKRLREGMPECVAAPKVRSSG 179 Query: 187 PVTPSNIPRFFDYPFQAIDP-MFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245 + P+ +YP Q+ D FP+ E+ A+ LR+FC+ Y +QRD PA++GTS+L Sbjct: 180 SIEPAPSITL-NYPRQSFDTAHFPVEEKAAIAQLRQFCQNGAGEYEQQRDFPAVEGTSRL 238 Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305 S L+ G LSPRQC +RL E L WL+ELIWREFYRHLM +YPS+C Sbjct: 239 SASLATGGLSPRQCLHRLLAEQPQALDGGAGSV--WLSELIWREFYRHLMTYYPSLCKHC 296 Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365 PFI WT++++W + LQAW++G TG+PI+DAAMRQLN+ GWMHNRLRMI+ASFLVKDL Sbjct: 297 PFIAWTDRVQWQSNPAHLQAWQEGKTGYPIVDAAMRQLNSTGWMHNRLRMISASFLVKDL 356 Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425 L+DWR GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG++FD +G FI Sbjct: 357 LIDWREGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGEKFDREGEFI 416 Query: 426 RHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481 R WLPEL +VP + +H P W K + L+YP PIVDHK+A TL Y A+K + Sbjct: 417 RRWLPELRDVPGKAVHEPWKWAQKAGVMLDYPQPIVDHKEARLRTLAAYEEARKGA 472 >gi|325498130|gb|EGC95989.1| deoxyribodipyrimidine photolyase [Escherichia fergusonii ECD227] Length = 472 Score = 528 bits (1359), Expect = e-147, Method: Composition-based stats. Identities = 252/476 (52%), Positives = 332/476 (69%), Gaps = 5/476 (1%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M+ HLVW R DLR+ DN AL AAC NS A V+A++IATP QW H +S RQ+ FI A L Sbjct: 1 MTTHLVWFRQDLRLHDNLALAAACRNSSAHVLALYIATPRQWAAHNMSPRQAEFINAQLN 60 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 +Q +L++KGI +H+ +F S+E + C + RVT LFYN QYE+NE RD +E+ Sbjct: 61 GLQIALAEKGIPLLFHEVDDFAASVEIVKQVCAENRVTHLFYNYQYEVNERARDVEVERA 120 Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 L+ V+C+ FDD V+LPPG+++ +MYKV+TPF+ A ++ L + + P +R +G Sbjct: 121 LR-NVVCEGFDDCVILPPGAVMTGNHEMYKVFTPFKNAWLKRLREGMPECVAAPKVRSSG 179 Query: 187 PVTPSNIPRFFDYPFQAIDP-MFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245 + P+ +YP Q+ D FP+ E+ A+ LR+FC+ Y +QRD PA++GTS+L Sbjct: 180 SLDPAPSITL-NYPRQSFDTAHFPVEEKAAIAQLRQFCQNGASQYDQQRDFPAVEGTSRL 238 Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305 S L+ G LSPRQC +RL E L WLNELIWREFYRHLM ++PS+C + Sbjct: 239 SASLATGRLSPRQCLHRLLAEQPQALDGGAGSV--WLNELIWREFYRHLMTYHPSLCKHR 296 Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365 PFI WT++++W + L+AW++G TG+PI+DAAMRQLN+ GWMHNRLRMITASFLVKDL Sbjct: 297 PFIAWTDRVQWQSNPAHLKAWQEGKTGYPIVDAAMRQLNSTGWMHNRLRMITASFLVKDL 356 Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425 L+DWR GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG++FD +G FI Sbjct: 357 LIDWREGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGEKFDHEGEFI 416 Query: 426 RHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481 R WLPEL +VP + +H P W K + L+YP PIVDHK+A TL Y AKK + Sbjct: 417 RQWLPELRDVPGKAVHEPWKWAQKAGVMLDYPQPIVDHKEARLRTLAAYEEAKKGA 472 >gi|323967456|gb|EGB62875.1| DNA photolyase [Escherichia coli M863] gi|327254382|gb|EGE66004.1| deoxyribodipyrimidine photo-lyase [Escherichia coli STEC_7v] Length = 472 Score = 528 bits (1359), Expect = e-147, Method: Composition-based stats. Identities = 252/474 (53%), Positives = 332/474 (70%), Gaps = 5/474 (1%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M+ HLVW R DLR+ DN AL AAC NS A+V+A++IATP QW H +S RQ+ FI A L Sbjct: 1 MTTHLVWFRQDLRLHDNLALAAACRNSSARVLALYIATPRQWAAHNVSPRQAEFINAQLN 60 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 +Q +L++KGI +H+ +F S+E + C + RVT LFYN QYE+NE RD +E+ Sbjct: 61 GLQIALAEKGIPLLFHEVDDFAASVEIVKQVCAENRVTHLFYNYQYEVNERARDVQVERT 120 Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 L+ V+C+ FDDSV+LPPG+++ +MYKV+TPF+ A ++ L + + P +R + Sbjct: 121 LR-NVVCEGFDDSVILPPGAVMTGNHEMYKVFTPFKNAWLKRLREGVPECVAAPKVRSSV 179 Query: 187 PVTPSNIPRFFDYPFQAIDP-MFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245 + + +YP Q D FP+ E+ A+ LR+FC+ Y +QRD PA++GTS+L Sbjct: 180 MIEAAPSITL-NYPRQPFDTAHFPVEEKAAIAQLRQFCQSGAGEYEQQRDFPAVEGTSRL 238 Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305 S L+ G LSPRQC +RL E L WLNELIWREFYRHLM +YPS+C + Sbjct: 239 SASLATGGLSPRQCLHRLLAEQPQALDGGAGSV--WLNELIWREFYRHLMTYYPSLCKHR 296 Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365 PFI WT++++W + L+AW++G TG+PI+DAAMRQLN+ GWMHNRLRMITASFLVKDL Sbjct: 297 PFIAWTDRVQWQSNPAHLKAWQEGKTGYPIVDAAMRQLNSTGWMHNRLRMITASFLVKDL 356 Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425 L+DWR GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG++FD +G FI Sbjct: 357 LIDWREGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGEKFDHEGEFI 416 Query: 426 RHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479 R WLPEL +VP + +H P W K ++L+YP PIVDHK+A TL Y AA+K Sbjct: 417 RQWLPELRDVPGKAVHEPWKWAQKAGVTLDYPQPIVDHKEARVRTLAAYEAARK 470 >gi|15829987|ref|NP_308760.1| deoxyribodipyrimidine photolyase [Escherichia coli O157:H7 str. Sakai] gi|168750637|ref|ZP_02775659.1| deoxyribodipyrimidine photolyase [Escherichia coli O157:H7 str. EC4113] gi|168757158|ref|ZP_02782165.1| deoxyribodipyrimidine photolyase [Escherichia coli O157:H7 str. EC4401] gi|168763986|ref|ZP_02788993.1| deoxyribodipyrimidine photolyase [Escherichia coli O157:H7 str. EC4501] gi|168767146|ref|ZP_02792153.1| deoxyribodipyrimidine photolyase [Escherichia coli O157:H7 str. EC4486] gi|168777031|ref|ZP_02802038.1| deoxyribodipyrimidine photolyase [Escherichia coli O157:H7 str. EC4196] gi|168779189|ref|ZP_02804196.1| deoxyribodipyrimidine photolyase [Escherichia coli O157:H7 str. EC4076] gi|168786859|ref|ZP_02811866.1| deoxyribodipyrimidine photolyase [Escherichia coli O157:H7 str. EC869] gi|168801385|ref|ZP_02826392.1| deoxyribodipyrimidine photolyase [Escherichia coli O157:H7 str. EC508] gi|195939049|ref|ZP_03084431.1| deoxyribodipyrimidine photolyase [Escherichia coli O157:H7 str. EC4024] gi|208809646|ref|ZP_03251983.1| deoxyribodipyrimidine photolyase [Escherichia coli O157:H7 str. EC4206] gi|208815503|ref|ZP_03256682.1| deoxyribodipyrimidine photolyase [Escherichia coli O157:H7 str. EC4045] gi|208822977|ref|ZP_03263295.1| deoxyribodipyrimidine photolyase [Escherichia coli O157:H7 str. EC4042] gi|209397896|ref|YP_002269331.1| deoxyribodipyrimidine photolyase [Escherichia coli O157:H7 str. EC4115] gi|217325709|ref|ZP_03441793.1| deoxyribodipyrimidine photolyase [Escherichia coli O157:H7 str. TW14588] gi|254791854|ref|YP_003076691.1| deoxyribodipyrimidine photolyase [Escherichia coli O157:H7 str. TW14359] gi|261224409|ref|ZP_05938690.1| deoxyribodipyrimidine photolyase, FAD-binding protein [Escherichia coli O157:H7 str. FRIK2000] gi|261254600|ref|ZP_05947133.1| deoxyribodipyrimidine photolyase, FAD-binding protein [Escherichia coli O157:H7 str. FRIK966] gi|13360191|dbj|BAB34156.1| deoxyribodipyrimidine photolyase [Escherichia coli O157:H7 str. Sakai] gi|187767666|gb|EDU31510.1| deoxyribodipyrimidine photolyase [Escherichia coli O157:H7 str. EC4196] gi|188015195|gb|EDU53317.1| deoxyribodipyrimidine photolyase [Escherichia coli O157:H7 str. EC4113] gi|189003074|gb|EDU72060.1| deoxyribodipyrimidine photolyase [Escherichia coli O157:H7 str. EC4076] gi|189355803|gb|EDU74222.1| deoxyribodipyrimidine photolyase [Escherichia coli O157:H7 str. EC4401] gi|189363333|gb|EDU81752.1| deoxyribodipyrimidine photolyase [Escherichia coli O157:H7 str. EC4486] gi|189365922|gb|EDU84338.1| deoxyribodipyrimidine photolyase [Escherichia coli O157:H7 str. EC4501] gi|189373172|gb|EDU91588.1| deoxyribodipyrimidine photolyase [Escherichia coli O157:H7 str. EC869] gi|189376468|gb|EDU94884.1| deoxyribodipyrimidine photolyase [Escherichia coli O157:H7 str. EC508] gi|208729447|gb|EDZ79048.1| deoxyribodipyrimidine photolyase [Escherichia coli O157:H7 str. EC4206] gi|208732151|gb|EDZ80839.1| deoxyribodipyrimidine photolyase [Escherichia coli O157:H7 str. EC4045] gi|208737170|gb|EDZ84854.1| deoxyribodipyrimidine photolyase [Escherichia coli O157:H7 str. EC4042] gi|209159296|gb|ACI36729.1| deoxyribodipyrimidine photolyase [Escherichia coli O157:H7 str. EC4115] gi|209776598|gb|ACI86611.1| deoxyribodipyrimidine photolyase [Escherichia coli] gi|209776600|gb|ACI86612.1| deoxyribodipyrimidine photolyase [Escherichia coli] gi|209776602|gb|ACI86613.1| deoxyribodipyrimidine photolyase [Escherichia coli] gi|209776606|gb|ACI86615.1| deoxyribodipyrimidine photolyase [Escherichia coli] gi|217321930|gb|EEC30354.1| deoxyribodipyrimidine photolyase [Escherichia coli O157:H7 str. TW14588] gi|254591254|gb|ACT70615.1| deoxyribodipyrimidine photolyase, FAD-binding [Escherichia coli O157:H7 str. TW14359] gi|320193102|gb|EFW67742.1| Deoxyribodipyrimidine photolyase [Escherichia coli O157:H7 str. EC1212] gi|320637955|gb|EFX07724.1| deoxyribodipyrimidine photolyase [Escherichia coli O157:H7 str. G5101] gi|320643350|gb|EFX12530.1| deoxyribodipyrimidine photolyase [Escherichia coli O157:H- str. 493-89] gi|320648699|gb|EFX17332.1| deoxyribodipyrimidine photolyase [Escherichia coli O157:H- str. H 2687] gi|320664741|gb|EFX31879.1| deoxyribodipyrimidine photolyase [Escherichia coli O157:H7 str. LSU-61] gi|326341556|gb|EGD65346.1| Deoxyribodipyrimidine photolyase [Escherichia coli O157:H7 str. 1044] gi|326345773|gb|EGD69512.1| Deoxyribodipyrimidine photolyase [Escherichia coli O157:H7 str. 1125] Length = 472 Score = 528 bits (1359), Expect = e-147, Method: Composition-based stats. Identities = 251/474 (52%), Positives = 331/474 (69%), Gaps = 5/474 (1%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M+ HLVW R DLR+ DN AL AAC NS A+++A++IATP QW H +S RQ+ I A L Sbjct: 1 MTTHLVWFRQDLRLHDNLALAAACRNSSARLLALYIATPRQWAAHNMSPRQAELINAQLN 60 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 +Q +L++KGI + + +F S+E + C + VT LFYN QYE+NE RD +E+ Sbjct: 61 GLQIALAEKGIPLLFREVDDFAASVEIVKQVCAENSVTHLFYNYQYEVNERARDVQVERT 120 Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 L+ V+C+ FDDSV+LPPG+++ +MYKV+TPF+ A ++ L + + P +R +G Sbjct: 121 LR-NVVCEGFDDSVILPPGAVMTGNHEMYKVFTPFKNAWLKRLREGMPECVAAPKVRSSG 179 Query: 187 PVTPSNIPRFFDYPFQAIDP-MFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245 + P+ +YP Q+ D FP+ E+ A+ LR+FC+ Y +QRD PA++GTS+L Sbjct: 180 SIKPAPSITL-NYPRQSFDTAHFPVEEKAAIAQLRQFCQNGAGEYEQQRDFPAVEGTSRL 238 Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305 S L+ G LSPRQC +RL E L WLNELIWREFYRHLM +YPS+C Sbjct: 239 SASLATGGLSPRQCLHRLLAEQPQALDGGAGSV--WLNELIWREFYRHLMTYYPSLCKHC 296 Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365 PFI WT++++W + LQAW++G TG+PI+DAAMRQLN+ GWMHNRLRMITASFLVKDL Sbjct: 297 PFIAWTDRVQWQSNPAHLQAWQEGKTGYPIVDAAMRQLNSTGWMHNRLRMITASFLVKDL 356 Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425 L+DWR GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG++FD +G FI Sbjct: 357 LIDWREGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGEKFDREGEFI 416 Query: 426 RHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479 R WLPEL NVP + +H P W +K + L+YP PIV+HK+A TL Y AA+K Sbjct: 417 RQWLPELRNVPGKSVHEPWKWAEKAGVKLDYPQPIVEHKEARVQTLAAYEAARK 470 >gi|74311231|ref|YP_309650.1| deoxyribodipyrimidine photolyase [Shigella sonnei Ss046] gi|73854708|gb|AAZ87415.1| deoxyribodipyrimidine photolyase (photoreactivation) [Shigella sonnei Ss046] gi|323163860|gb|EFZ49670.1| deoxyribodipyrimidine photo-lyase [Shigella sonnei 53G] Length = 472 Score = 528 bits (1359), Expect = e-147, Method: Composition-based stats. Identities = 250/474 (52%), Positives = 330/474 (69%), Gaps = 5/474 (1%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M+ HLVW R DLR+ DN AL AAC NS A+V+A++IATP QW H +S RQ+ I A L Sbjct: 1 MTTHLVWFRQDLRLHDNLALAAACRNSSARVLALYIATPRQWATHNMSPRQAELINAQLN 60 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 +Q +L++KGI + + +F S+E + C + VT LFYN QYE+NE RD +E+ Sbjct: 61 GLQIALAEKGIPLLFREVDDFVASVEIVKQVCAENSVTHLFYNYQYEVNERARDVEVERA 120 Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 L+ V+C+ FDDSV+LPPG+++ +MYKV+TPF+ A ++ L + + P +R +G Sbjct: 121 LR-NVVCEGFDDSVILPPGAVMTGNHEMYKVFTPFKNAWLKRLREGMPECVAAPKVRSSG 179 Query: 187 PVTPSNIPRFFDYPFQAIDP-MFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245 + PS +YP Q+ D FP+ E+ A+ LR+FC+ Y +QRD PA++GTS+L Sbjct: 180 SIEPSPSITL-NYPRQSFDTAHFPVEEKAAIAQLRQFCQNGAGEYEQQRDFPAVEGTSRL 238 Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305 S L+ G LSPRQC +RL E L WLNELIWREFYRHL+ ++PS+C + Sbjct: 239 SASLATGGLSPRQCLHRLLAEQPQALDGGVGSV--WLNELIWREFYRHLITYHPSLCKHR 296 Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365 P I WT++++W + LQAW++G TG+PI+DAAMRQLN+ GWMHNRLRMITASFLVKDL Sbjct: 297 PIIAWTDRVQWQSNPAHLQAWQEGKTGYPIVDAAMRQLNSTGWMHNRLRMITASFLVKDL 356 Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425 L+DWR GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG++FD +G FI Sbjct: 357 LIDWREGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGEKFDLEGEFI 416 Query: 426 RHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479 R WLPEL NVP + +H P W K + L+YP PIV+HK+A TL Y AA+K Sbjct: 417 RQWLPELRNVPGKSVHEPWKWAQKAGVKLDYPQPIVEHKEARVQTLAAYEAARK 470 >gi|15800411|ref|NP_286423.1| deoxyribodipyrimidine photolyase [Escherichia coli O157:H7 EDL933] gi|12513619|gb|AAG55031.1|AE005249_2 deoxyribodipyrimidine photolyase (photoreactivation) [Escherichia coli O157:H7 str. EDL933] Length = 472 Score = 527 bits (1358), Expect = e-147, Method: Composition-based stats. Identities = 251/474 (52%), Positives = 331/474 (69%), Gaps = 5/474 (1%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M+ HLVW R DLR+ DN AL AAC NS A+++A++IATP QW H +S RQ+ I A L Sbjct: 1 MTTHLVWFRQDLRLHDNLALAAACRNSSARLLALYIATPRQWAAHNMSPRQAELINAQLN 60 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 +Q +L++KGI + + +F S+E + C + VT LFYN QYE+NE RD +E+ Sbjct: 61 GLQIALAEKGIPLLFREVDDFAASVEIVKQVCAENSVTHLFYNYQYEVNERARDVQVERT 120 Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 L+ V+C+ FDDSV+LPPG+++ +MYKV+TPF+ A ++ L + + P +R +G Sbjct: 121 LR-NVVCEGFDDSVILPPGAVMTGNHEMYKVFTPFKNAWLKRLREGMPECVAAPKVRSSG 179 Query: 187 PVTPSNIPRFFDYPFQAIDP-MFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245 + P+ +YP Q+ D FP+ E+ A+ LR+FC+ Y +QRD PA++GTS+L Sbjct: 180 SIKPAPSITL-NYPRQSFDTAHFPVEEKAAIAQLRQFCQNGAGEYEQQRDFPAVEGTSRL 238 Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305 S L+ G LSPRQC +RL E L WLNELIWREFYRHLM +YPS+C Sbjct: 239 SASLATGGLSPRQCLHRLLAEQPQALDGGAGSV--WLNELIWREFYRHLMTYYPSLCKHC 296 Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365 PFI WT++++W + LQAW++G TG+PI+DAAMRQLN+ GWMHNRLRMITASFLVKDL Sbjct: 297 PFIAWTDRVQWQXNPAHLQAWQEGKTGYPIVDAAMRQLNSTGWMHNRLRMITASFLVKDL 356 Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425 L+DWR GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG++FD +G FI Sbjct: 357 LIDWREGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGEKFDREGEFI 416 Query: 426 RHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479 R WLPEL NVP + +H P W +K + L+YP PIV+HK+A TL Y AA+K Sbjct: 417 RQWLPELRNVPGKSVHEPWKWAEKAGVKLDYPQPIVEHKEARVQTLAAYEAARK 470 >gi|170769095|ref|ZP_02903548.1| deoxyribodipyrimidine photolyase [Escherichia albertii TW07627] gi|170122167|gb|EDS91098.1| deoxyribodipyrimidine photolyase [Escherichia albertii TW07627] Length = 472 Score = 527 bits (1358), Expect = e-147, Method: Composition-based stats. Identities = 250/474 (52%), Positives = 333/474 (70%), Gaps = 5/474 (1%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M++HLVW R DLR+ DN AL AC NS A+V+A++IATP QW H +S RQ+ FI A L Sbjct: 1 MTIHLVWFRQDLRLHDNLALAVACRNSSARVLALYIATPCQWAAHSMSPRQAEFINAQLN 60 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 +Q +L++KGI + + +F S+E + C + RVT LFYN QYE+NE RD +E+ Sbjct: 61 GLQIALAEKGIPLLFREVDDFAASVEIVKQVCAENRVTHLFYNYQYEVNERARDVQVERA 120 Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 L+ V+C+ FDDSV+LPPG+++ +MYKV+TPF+ A ++ L + + P +R +G Sbjct: 121 LR-NVVCEGFDDSVILPPGAVMTGNHEMYKVFTPFKNAWLKRLREGMPECVAAPKVRSSG 179 Query: 187 PVTPSNIPRFFDYPFQAIDP-MFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245 + P+ +YP Q+ D FP+ E+ A+ LR+FC+ V Y +QRD PA++GTS+L Sbjct: 180 SIDPAPSITL-NYPRQSFDTAHFPVEEKAAIAQLRQFCQNGVGQYEQQRDFPAVEGTSRL 238 Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305 S L+ G SPRQC +RL E L WLNELIWREFYRHL+ +YP++C + Sbjct: 239 SASLATGGGSPRQCLHRLLAEQPQALEGGAGSV--WLNELIWREFYRHLITYYPTLCKHR 296 Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365 PFI WT++++W + L+AW++G TG+PI+DAAMRQLN+ GWMHNRLRMITASFLVKDL Sbjct: 297 PFIAWTDRVQWQSNPAHLKAWQEGKTGYPIVDAAMRQLNSTGWMHNRLRMITASFLVKDL 356 Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425 L+DWR GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG++FD +G FI Sbjct: 357 LIDWREGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGEKFDHEGEFI 416 Query: 426 RHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479 R WLPEL +VP + +H P W K + L+YP PIVDHK+A TL Y AA+K Sbjct: 417 RQWLPELRDVPGKAVHEPWKWAQKAGVRLDYPEPIVDHKEARLRTLAAYEAARK 470 >gi|320179459|gb|EFW54416.1| Deoxyribodipyrimidine photolyase [Shigella boydii ATCC 9905] Length = 472 Score = 527 bits (1358), Expect = e-147, Method: Composition-based stats. Identities = 248/474 (52%), Positives = 330/474 (69%), Gaps = 5/474 (1%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M+ HL W R DLR+ DN AL AAC NS A+V+A++IATP QW H +S RQ+ I A L Sbjct: 1 MTTHLAWFRQDLRLHDNLALAAACRNSSARVLALYIATPRQWETHNMSPRQAELINAQLN 60 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 +Q +L++KGI + + +F S+E + C + VT LFYN QYE+NE RD +E+ Sbjct: 61 GLQIALAEKGIPLLFREVDDFVASVEIVKQVCAENSVTHLFYNYQYEVNERARDVDVERA 120 Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 L+ V+C+ FDDSV+LPPG+++ +M+KV+TPF+ A ++ L + + VP +R +G Sbjct: 121 LR-NVVCEGFDDSVILPPGAVMTGNHEMHKVFTPFKNAWLKRLREGMPECVAVPKVRSSG 179 Query: 187 PVTPSNIPRFFDYPFQAIDP-MFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245 + P+ +YP Q+ D FP+ E+ A+ LR+FC+ Y +QRD PA++GTS+L Sbjct: 180 SIKPAPSITL-NYPRQSFDTAHFPVEEKAAIAQLRQFCENGAGEYEQQRDFPAVEGTSRL 238 Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305 S L+ G LSPRQC +RL E L WL+ELIWREFYRHLM +YPS+C + Sbjct: 239 SASLATGGLSPRQCLHRLLAEQPQALDGGAGSV--WLSELIWREFYRHLMTYYPSLCKHR 296 Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365 PFI WT++++W + LQAW++G TG+PI+DAAMRQLN+ GWMHNRLRMITASFLVKDL Sbjct: 297 PFIAWTDRVQWQSNPAHLQAWQKGKTGYPIVDAAMRQLNSTGWMHNRLRMITASFLVKDL 356 Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425 L+DWR GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNP QG++FD +G FI Sbjct: 357 LIDWREGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPITQGEKFDREGEFI 416 Query: 426 RHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479 R WLPEL +VP + +H P W K + L+YP PIV+HK+A TL Y AA+K Sbjct: 417 RRWLPELRDVPGKAVHEPWKWAQKAGVKLDYPQPIVEHKEARVQTLAAYEAARK 470 >gi|333010183|gb|EGK29618.1| deoxyribodipyrimidine photo-lyase [Shigella flexneri K-272] gi|333021140|gb|EGK40397.1| deoxyribodipyrimidine photo-lyase [Shigella flexneri K-227] Length = 472 Score = 526 bits (1356), Expect = e-147, Method: Composition-based stats. Identities = 250/474 (52%), Positives = 329/474 (69%), Gaps = 5/474 (1%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M+ HL W R DLR+ DN AL AAC NS A+V+A++IATP QW H +S RQ+ I A L Sbjct: 1 MTTHLAWFRQDLRLHDNLALAAACRNSSARVLALYIATPRQWETHNMSPRQAELINAQLN 60 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 +Q +L++KGI + + +F S+E + C + VT LFYN QYE+NE RD +E+ Sbjct: 61 GLQIALAEKGIPLLFREVDDFVASVEIVKQVCAENSVTHLFYNYQYEVNERARDVDVERA 120 Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 L+ V+C+ FDDSV+LPPG+++ +MYKV+TPF+ A ++ L + + P +R +G Sbjct: 121 LR-NVVCEGFDDSVILPPGAVMTGNHEMYKVFTPFKNAWLKRLREGMPECVAAPKVRSSG 179 Query: 187 PVTPSNIPRFFDYPFQAIDP-MFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245 + P+ +YP Q+ D FP+ E+ A+ LR+FC+ Y +QRD PA++GTS+L Sbjct: 180 SIKPAPSITL-NYPRQSFDTAHFPVEEKAAIAQLRQFCENGAGEYEQQRDFPAVEGTSRL 238 Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305 S L+ G LSPRQC +RL E L WL+ELIWREFYRHLM +YPS+C + Sbjct: 239 SASLATGGLSPRQCLHRLLAEQPQALDGGAGSV--WLSELIWREFYRHLMTYYPSLCKHR 296 Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365 PFI WT++++W + LQAW++G TG+PIIDAAMRQLN+ GWMHNRLRMITASFLVKDL Sbjct: 297 PFIVWTDRVQWQSNPAHLQAWQKGKTGYPIIDAAMRQLNSTGWMHNRLRMITASFLVKDL 356 Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425 L+DWR GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNP QG++FD +G FI Sbjct: 357 LIDWREGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPITQGEKFDREGEFI 416 Query: 426 RHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479 R WLPEL NVP + +H P W K + L+YP PIV+HK+A TL Y AA+K Sbjct: 417 RRWLPELRNVPGKAVHEPWKWAQKAGVKLDYPQPIVEHKEARVQTLAAYEAARK 470 >gi|301020834|ref|ZP_07184898.1| FAD binding domain of DNA photolyase [Escherichia coli MS 69-1] gi|300398480|gb|EFJ82018.1| FAD binding domain of DNA photolyase [Escherichia coli MS 69-1] Length = 472 Score = 526 bits (1356), Expect = e-147, Method: Composition-based stats. Identities = 250/476 (52%), Positives = 330/476 (69%), Gaps = 5/476 (1%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M+ HLVW R DLR DN AL AAC S A+V+A++IATP QW H +S RQ+ I A L Sbjct: 1 MTTHLVWFRQDLRQHDNLALAAACRYSSARVLALYIATPRQWAAHNVSPRQAELINAQLN 60 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 ++Q +L++KGI +H+ +F S+E + C + RVT LFYN QYE+NE RD +E+ Sbjct: 61 RLQIALAEKGIPLLFHEVDDFAASVEIVKQVCAENRVTHLFYNYQYEVNERARDAQVERT 120 Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 L+ V+C+ FDDSV+LPPG+++ +MYKV+TPF+ A ++ L + + P +R +G Sbjct: 121 LR-NVVCEGFDDSVILPPGAVMTGNHEMYKVFTPFKNAWLKRLREGMPECVAAPKVRSSG 179 Query: 187 PVTPSNIPRFFDYPFQAIDP-MFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245 + P+ +YP Q D FP+ E+ A+ LR+FC+ Y +QRD PA++GTS+L Sbjct: 180 SIDPAPSITL-NYPRQPFDTAHFPVEEKAAIAQLRQFCQNGAGEYEQQRDFPAVEGTSRL 238 Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305 S L+ G LSPRQC +RL E L WL+ELIWREFYRHLM +YPS+C Sbjct: 239 SASLATGGLSPRQCLHRLLAEQPQALDGGAGSV--WLSELIWREFYRHLMTYYPSLCKHC 296 Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365 PFI WT++++W + LQ W++G TG+PI+DAAMRQLN+ GWMHNRLRMITASFLVKDL Sbjct: 297 PFIAWTDRVQWQSNPAHLQVWQEGKTGYPIVDAAMRQLNSTGWMHNRLRMITASFLVKDL 356 Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425 L+DWR GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG++FD +G FI Sbjct: 357 LIDWREGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGEKFDREGEFI 416 Query: 426 RHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481 R WLPEL +VP + +H P W K ++L+YP PIVDHK+A TL Y A+K + Sbjct: 417 RQWLPELRDVPGKVVHEPWKWAQKAGVTLDYPQPIVDHKEARLRTLAAYEEARKGA 472 >gi|242238580|ref|YP_002986761.1| deoxyribodipyrimidine photolyase [Dickeya dadantii Ech703] gi|242130637|gb|ACS84939.1| Deoxyribodipyrimidine photo-lyase [Dickeya dadantii Ech703] Length = 477 Score = 526 bits (1356), Expect = e-147, Method: Composition-based stats. Identities = 273/476 (57%), Positives = 350/476 (73%), Gaps = 1/476 (0%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M+ HLVW RNDLRITDN ALYAAC + +A+V AVFIATP QW++H ++ RQ+ ++ +L Sbjct: 1 MTTHLVWFRNDLRITDNLALYAACQDPEAQVEAVFIATPGQWKRHEMAPRQAALLFDCVL 60 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 Q+Q++L +KGI YHQC +FD ++EWL + C Q++ T LFYNRQYE NE RRD+ L + Sbjct: 61 QLQRALYEKGIPLHYHQCEDFDGALEWLAALCRQRQATHLFYNRQYEWNEQRRDQALSRH 120 Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 L++ V ++FDDS+LL PGS++ + +MYKV+TPFR A I L+Q S+P P R Sbjct: 121 LENGVRIQAFDDSLLLAPGSVVTGSGEMYKVFTPFRTAFITQLLQTSTDSVPAPTARRQP 180 Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246 + P P FDYP + FP GE AL LR+FC+E+V+ Y E RD+P+ TS+LS Sbjct: 181 -LPPLTPPAPFDYPQLDVAGDFPAGEAAALQRLRQFCREQVHVYHELRDVPSRPATSRLS 239 Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP 306 PYL++GVLSPRQC+NRL+ E D L + + GAF W NEL+WREFYRHL+ F+P++C +P Sbjct: 240 PYLALGVLSPRQCFNRLRAEHPDWLAQREGGAFCWFNELVWREFYRHLLVFHPALCRHRP 299 Query: 307 FIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLL 366 FI WT+++ W L AW++G TG+PI+DA MRQL+ GWMHNRLRMI ASFLVKDLL Sbjct: 300 FIAWTDRVVWRSAPQELLAWQRGETGYPIVDAGMRQLHQTGWMHNRLRMICASFLVKDLL 359 Query: 367 VDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIR 426 +DWR GE YFMSQLLDGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG+RFDP G FIR Sbjct: 360 IDWREGERYFMSQLLDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGERFDPNGDFIR 419 Query: 427 HWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQSL 482 W+PEL VP + IH PH W +K L+YPLPIVDHK+A TL + AAKK ++ Sbjct: 420 RWVPELAGVPGKDIHQPHRWAEKMRCRLDYPLPIVDHKQARVRTLAAFDAAKKLAV 475 >gi|1827916|pdb|1DNP|A Chain A, Structure Of Deoxyribodipyrimidine Photolyase gi|1827917|pdb|1DNP|B Chain B, Structure Of Deoxyribodipyrimidine Photolyase Length = 471 Score = 526 bits (1356), Expect = e-147, Method: Composition-based stats. Identities = 249/473 (52%), Positives = 331/473 (69%), Gaps = 5/473 (1%) Query: 8 SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67 + HLVW R DLR+ DN AL AAC NS A+V+A++IATP QW H +S RQ+ I A L Sbjct: 1 TTHLVWFRQDLRLHDNLALAAACRNSSARVLALYIATPRQWATHNMSPRQAELINAQLNG 60 Query: 68 VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127 +Q +L++KGI + + +F S+E + C + VT LFYN QYE+NE RD +E+ L Sbjct: 61 LQIALAEKGIPLLFREVDDFVASVEIVKQVCAENSVTHLFYNYQYEVNERARDVEVERAL 120 Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187 + V+C+ FDDSV+LPPG+++ +MYKV+TPF+ A ++ L + + P +R +G Sbjct: 121 R-NVVCEGFDDSVILPPGAVMTGNHEMYKVFTPFKNAWLKRLREGMPECVAAPKVRSSGS 179 Query: 188 VTPSNIPRFFDYPFQAIDP-MFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246 + PS +YP Q+ D FP+ E+ A+ LR+FC+ Y +QRD PA++GTS+LS Sbjct: 180 IEPSPSITL-NYPRQSFDTAHFPVEEKAAIAQLRQFCQNGAGEYEQQRDFPAVEGTSRLS 238 Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP 306 L+ G LSPRQC +RL E L WLNELIWREFYRHL+ ++PS+C +P Sbjct: 239 ASLATGGLSPRQCLHRLLAEQPQALDGGAGSV--WLNELIWREFYRHLITYHPSLCKHRP 296 Query: 307 FIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLL 366 FI WT++++W + LQAW++G TG+PI+DAAMRQLN+ GWMHNRLRMITASFLVKDLL Sbjct: 297 FIAWTDRVQWQSNPAHLQAWQEGKTGYPIVDAAMRQLNSTGWMHNRLRMITASFLVKDLL 356 Query: 367 VDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIR 426 +DWR GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG++FD +G FIR Sbjct: 357 IDWREGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGEKFDHEGEFIR 416 Query: 427 HWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479 WLPEL +VP + +H P W K ++L+YP PIV+HK+A TL Y AA+K Sbjct: 417 QWLPELRDVPGKVVHEPWKWAQKAGVTLDYPQPIVEHKEARVQTLAAYEAARK 469 >gi|227114750|ref|ZP_03828406.1| deoxyribodipyrimidine photolyase [Pectobacterium carotovorum subsp. brasiliensis PBR1692] Length = 492 Score = 526 bits (1356), Expect = e-147, Method: Composition-based stats. Identities = 275/476 (57%), Positives = 352/476 (73%), Gaps = 2/476 (0%) Query: 4 TTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYA 63 TT H+VWLRNDLR+TDN ALYAAC + +A V+AVFIATP QW +H ++ RQ+ F+ Sbjct: 2 TTHAVTHVVWLRNDLRVTDNLALYAACQDPNATVLAVFIATPVQWEKHDMAPRQAAFLLE 61 Query: 64 SLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLL 123 +L VQ++L++KGI YH+C++F S++WL +C QQ+ T LFYN QYEINE RDK + Sbjct: 62 NLRLVQQALAEKGIPLHYHECADFAASVDWLVQFCAQQQATDLFYNYQYEINERLRDKQV 121 Query: 124 EKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIR 183 + RL V+C + DS+LLPPGS+L +MYKV+TPFR+A I+ L+++D +P P R Sbjct: 122 KDRLADSVVCHGYHDSLLLPPGSVLTGNGEMYKVFTPFRQAFIKRLLESDTTCVPAPDAR 181 Query: 184 LTGPVTPSNIPRFFDYPFQAID-PMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGT 242 P+ F YP + +D FP GE+ AL LR+FC+E+V Y +QRD PA+ GT Sbjct: 182 -GEPINNMVELAPFSYPQREVDGDDFPSGERAALQQLRRFCREQVQDYDQQRDFPALPGT 240 Query: 243 SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVC 302 S+LSPYL++G++SPRQC+NRL+ E ++L + + GAF+W NEL+WREFYRHL+ +P +C Sbjct: 241 SKLSPYLALGIVSPRQCFNRLRAECPEMLERREGGAFTWFNELVWREFYRHLIVSWPQLC 300 Query: 303 MGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLV 362 +PF WT+ ++W + L AW+QG TG+PI+DAAMRQLN GWMHNRLRMI ASFLV Sbjct: 301 KHRPFTAWTQWVKWRESREDLAAWQQGKTGYPIVDAAMRQLNETGWMHNRLRMICASFLV 360 Query: 363 KDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQG 422 KDLL+DWR GE YFMSQLLDGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG+RFDP+G Sbjct: 361 KDLLIDWREGERYFMSQLLDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGERFDPEG 420 Query: 423 TFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478 FIRHWLPEL VP + IH PH W DK+ LNYPLPIVDHK A TL + AAK Sbjct: 421 RFIRHWLPELAAVPDKDIHQPHRWADKHHHQLNYPLPIVDHKTARQDTLAAFEAAK 476 >gi|222032448|emb|CAP75187.1| Deoxyribodipyrimidine photo-lyase [Escherichia coli LF82] gi|312945236|gb|ADR26063.1| deoxyribodipyrimidine photolyase [Escherichia coli O83:H1 str. NRG 857C] Length = 472 Score = 526 bits (1356), Expect = e-147, Method: Composition-based stats. Identities = 248/476 (52%), Positives = 331/476 (69%), Gaps = 5/476 (1%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M+ HLVW R DLR DN AL AAC NS A+V+A++IATP QW H +S RQ+ I L Sbjct: 1 MTTHLVWFRQDLRQHDNLALAAACRNSSARVLALYIATPRQWAAHNVSPRQAELINTQLN 60 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 +Q +L++KGI + + +F S+E + C + R+T LFYN QYE+NE RD E+ Sbjct: 61 ALQNALAEKGIPLLFREVDDFAASVETVKQVCAENRITHLFYNYQYEVNERARDVQAERT 120 Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 L+ V+C+ FDDSV+LPPG+++ +MYKV+TPF+ A ++ L + + P +R +G Sbjct: 121 LR-NVVCEGFDDSVILPPGAVMTGNHEMYKVFTPFKNAWLKRLREGMPECVAAPKVRSSG 179 Query: 187 PVTPSNIPRFFDYPFQAIDP-MFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245 + P+ +YP Q+ D FP+ E+ A+ LR+FC+ Y +QRD PA++GTS+L Sbjct: 180 SIEPAPSITL-NYPRQSFDTAHFPVEEKAAIAQLRQFCQNGAGEYEQQRDFPAVEGTSRL 238 Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305 S L+ G LSPRQC +RL E L WL+ELIWREFYRHLM +YPS+C + Sbjct: 239 SASLATGGLSPRQCLHRLLAEQPQALDGGAGSV--WLSELIWREFYRHLMTYYPSLCKHR 296 Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365 PFI WT++++W + L+AW++G TG+PI+DAAMRQLN+ GWMHNRLRMITASFLVKDL Sbjct: 297 PFIAWTDRVQWQSNPAHLKAWQEGKTGYPIVDAAMRQLNSTGWMHNRLRMITASFLVKDL 356 Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425 L+DWR GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG++FD +G FI Sbjct: 357 LIDWREGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGEKFDREGEFI 416 Query: 426 RHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481 R WLPEL +VP + +H P W +K ++L+YP PIVDHK+A TL Y A+K + Sbjct: 417 RQWLPELRDVPGKAVHEPWKWAEKTGVTLDYPQPIVDHKEARLRTLAAYEEARKGA 472 >gi|110804662|ref|YP_688182.1| deoxyribodipyrimidine photolyase [Shigella flexneri 5 str. 8401] gi|110614210|gb|ABF02877.1| deoxyribodipyrimidine photolyase [Shigella flexneri 5 str. 8401] gi|332760931|gb|EGJ91219.1| deoxyribodipyrimidine photo-lyase [Shigella flexneri 4343-70] gi|333008008|gb|EGK27484.1| deoxyribodipyrimidine photo-lyase [Shigella flexneri K-218] Length = 472 Score = 526 bits (1356), Expect = e-147, Method: Composition-based stats. Identities = 249/474 (52%), Positives = 329/474 (69%), Gaps = 5/474 (1%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M+ HL W R DLR+ DN AL AAC NS A+V+A++IATP QW H +S RQ+ I A L Sbjct: 1 MTTHLAWFRQDLRLHDNLALAAACRNSSARVLALYIATPRQWETHNMSPRQAELINAQLN 60 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 +Q +L++KGI + + +F S+E + C + VT LFYN QYE+NE RD +E+ Sbjct: 61 GLQIALAEKGIPLLFREVDDFVASVEIVKQVCAENSVTHLFYNYQYEVNERARDVDVERA 120 Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 L+ V+C+ FDDSV+LPPG+++ +MYKV+TPF+ A ++ L + + P +R +G Sbjct: 121 LR-NVVCEGFDDSVILPPGAVMTGNHEMYKVFTPFKNAWLKRLREGMPECVAAPKVRSSG 179 Query: 187 PVTPSNIPRFFDYPFQAIDP-MFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245 + P+ +YP Q+ D FP+ E+ A+ LR+FC+ Y +QRD PA++GTS+L Sbjct: 180 SIKPAPSITL-NYPRQSFDTAHFPVEEKAAIAQLRQFCENGAGEYEQQRDFPAVEGTSRL 238 Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305 S L+ G LSPRQC +RL E L WL+ELIWREFYRHLM +YPS+C + Sbjct: 239 SASLATGGLSPRQCLHRLLAEQPQALDGGAGSV--WLSELIWREFYRHLMTYYPSLCKHR 296 Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365 PFI WT++++W + LQAW++G TG+PIIDAAMRQLN+ GWMHNRLRMITASFLVKDL Sbjct: 297 PFIAWTDRVQWQSNPAHLQAWQKGKTGYPIIDAAMRQLNSTGWMHNRLRMITASFLVKDL 356 Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425 L+DWR GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNP QG++FD +G FI Sbjct: 357 LIDWREGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPITQGEKFDREGEFI 416 Query: 426 RHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479 R WLPEL +VP + +H P W K + L+YP PIV+HK+A TL Y AA+K Sbjct: 417 RRWLPELRDVPGKAVHEPWKWAQKAGVKLDYPQPIVEHKEARVQTLAAYEAARK 470 >gi|261344548|ref|ZP_05972192.1| deoxyribodipyrimidine photolyase [Providencia rustigianii DSM 4541] gi|282567462|gb|EFB72997.1| deoxyribodipyrimidine photolyase [Providencia rustigianii DSM 4541] Length = 478 Score = 526 bits (1356), Expect = e-147, Method: Composition-based stats. Identities = 268/473 (56%), Positives = 340/473 (71%), Gaps = 2/473 (0%) Query: 10 HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69 HLVW R DLR+TDNKAL +AC +SD++VI VFIATP+QW HG+S RQ F++ +L+++Q Sbjct: 5 HLVWFRGDLRVTDNKALSSACQDSDSQVIGVFIATPDQWASHGVSPRQITFMHQNLIELQ 64 Query: 70 KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH 129 ++L+++GI H S F DS +WL Y QQ+V LF+N+QYE+NE +RD+ + + Q Sbjct: 65 RALAERGIPLVCHTVSTFADSAKWLLEYAKQQQVKALFFNQQYELNERQRDQWVTQHAQS 124 Query: 130 RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189 + S+DD+VL+ PG + +MY+VYTPFR+A + L+ D RSLP P R + P+ Sbjct: 125 LNVF-SYDDAVLISPGVVQTQKGEMYQVYTPFRRAFLSQLMMTDYRSLPAPKPR-SEPII 182 Query: 190 PSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYL 249 N F + I P F GEQ AL LR FC+E+V Y RDIP+I GTSQLSPYL Sbjct: 183 IDNSQPLFPHTPVEIAPQFIAGEQAALAKLRLFCRERVQDYQRDRDIPSIDGTSQLSPYL 242 Query: 250 SIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIP 309 +IG LSPRQC NRL E + P SG FSWLNEL+WREFY HL+ +P +C +PFI Sbjct: 243 AIGTLSPRQCVNRLLAENPHIFDSPDSGGFSWLNELVWREFYSHLLVAFPRLCRHQPFIE 302 Query: 310 WTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDW 369 WT+ I+WN D AWK G TG+PI+DAAMRQLN GWMHNRLRMI ASFLVKDLL+DW Sbjct: 303 WTQHIQWNPDEDAFTAWKTGQTGYPIVDAAMRQLNQTGWMHNRLRMIVASFLVKDLLIDW 362 Query: 370 RIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWL 429 R GE YF+SQL+DG LA+NNGGWQW+ASTG D+ P+FRIFNPT QGK+FDPQGTFI WL Sbjct: 363 RKGEHYFISQLIDGTLAANNGGWQWSASTGVDASPWFRIFNPTTQGKKFDPQGTFIHKWL 422 Query: 430 PELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQSL 482 PEL NVP Q+IH PH+W + N ++LNYP PIVDHK+A +TL + A K+ S+ Sbjct: 423 PELRNVPEQFIHEPHTWAESNQVTLNYPTPIVDHKQARLNTLEAFEAGKRGSM 475 >gi|194433989|ref|ZP_03066260.1| deoxyribodipyrimidine photolyase [Shigella dysenteriae 1012] gi|194417754|gb|EDX33852.1| deoxyribodipyrimidine photolyase [Shigella dysenteriae 1012] gi|332096470|gb|EGJ01466.1| deoxyribodipyrimidine photo-lyase [Shigella dysenteriae 155-74] Length = 472 Score = 526 bits (1356), Expect = e-147, Method: Composition-based stats. Identities = 248/474 (52%), Positives = 330/474 (69%), Gaps = 5/474 (1%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M+ HL W R DLR+ DN AL AAC NS A+V+A++IATP QW H +S RQ+ I A L Sbjct: 1 MTTHLAWFRQDLRLHDNLALAAACRNSSARVLALYIATPRQWETHNMSPRQAELINAQLN 60 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 +Q +L++KGI + + +F S+E + C + VT LFYN QYE+NE RD +E+ Sbjct: 61 GLQIALAEKGIPLLFREVDDFVASVEIVKQVCAENSVTHLFYNYQYEVNERARDVDVERA 120 Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 L+ V+C+ FDDSV+LPPG+++ +MYKV+TPF+ A ++ L + + P +R +G Sbjct: 121 LR-NVVCEGFDDSVILPPGAVMTGNHEMYKVFTPFKNAWLKRLREGMPECVAAPKVRSSG 179 Query: 187 PVTPSNIPRFFDYPFQAIDP-MFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245 + P+ +YP Q+ D FP+ E+ A+ LR+FC+ Y +QRD PA++GTS+L Sbjct: 180 SIKPAPSITL-NYPRQSFDTAHFPVEEKAAIAQLRQFCENGAGEYEQQRDFPAVEGTSRL 238 Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305 S L+ G LSPRQC +RL E L WL+ELIWREFYRHLM +YPS+C + Sbjct: 239 SVSLATGGLSPRQCLHRLLAEQPQALDGGAGSV--WLSELIWREFYRHLMTYYPSLCKHR 296 Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365 PFI WT++++W + LQAW++G TG+PI+DAAMRQLN+ GWMHNRLRMITASFLVKDL Sbjct: 297 PFIAWTDRVQWQSNPAHLQAWQKGKTGYPIVDAAMRQLNSTGWMHNRLRMITASFLVKDL 356 Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425 L+DWR GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNP QG++FD +G FI Sbjct: 357 LIDWREGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPITQGEKFDREGEFI 416 Query: 426 RHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479 R WLPEL +VP + +H P W+ K + L+YP PIV+HK+A TL Y AA+K Sbjct: 417 RRWLPELRDVPGKAVHEPWKWVQKAGVKLDYPQPIVEHKEARVQTLAAYEAARK 470 >gi|218688505|ref|YP_002396717.1| deoxyribodipyrimidine photolyase [Escherichia coli ED1a] gi|218426069|emb|CAR06886.1| deoxyribodipyrimidine photolyase, FAD-binding [Escherichia coli ED1a] Length = 472 Score = 526 bits (1355), Expect = e-147, Method: Composition-based stats. Identities = 250/476 (52%), Positives = 333/476 (69%), Gaps = 5/476 (1%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M+ HLVW R DLR DN AL AAC NS A+V+A++IATP QW H +S RQ+ I L Sbjct: 1 MTTHLVWFRQDLRQHDNLALAAACRNSSARVLALYIATPRQWAAHNVSPRQAELINTQLN 60 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 +Q +L++KGI +H+ +F S+E + C + R+T LFYN QYE+NE RD E+ Sbjct: 61 ALQNALAEKGIPLLFHEVDDFAASVETVKQVCAENRITHLFYNYQYEVNERARDVQAERT 120 Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 L+ V+C+ FDDSV+LPPG+++ +MYKV+TPF+ A ++ L + + P +R +G Sbjct: 121 LR-NVVCEGFDDSVILPPGAVMTGNHEMYKVFTPFKNAWLKRLREGMPECVAAPKVRSSG 179 Query: 187 PVTPSNIPRFFDYPFQAIDP-MFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245 + P+ +YP Q+ D FP+ E+ A+ LR+FC+ Y +QRD PA++GTS+L Sbjct: 180 SIEPAPSITL-NYPRQSFDTAHFPVEEKAAIAQLRQFCQNGAGEYEQQRDFPAVEGTSRL 238 Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305 S L+ G LSPRQC +RL E +L WLNELIWREFYRHLM +YPS+C + Sbjct: 239 SASLATGGLSPRQCLHRLLAEQPQVLEGGPGSV--WLNELIWREFYRHLMTYYPSLCKHR 296 Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365 PFI WT++++W + L+AW++G TG+PI+DAAMRQLN+ GWMHNRLRMITASFLVKDL Sbjct: 297 PFIAWTDRVQWQSNPAHLKAWQEGKTGYPIVDAAMRQLNSTGWMHNRLRMITASFLVKDL 356 Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425 L+DWR GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG++FD +G FI Sbjct: 357 LIDWREGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGEKFDREGEFI 416 Query: 426 RHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481 R WLPEL +VP + +H P W +K ++L+YP PIVDHK+A TL Y A+K + Sbjct: 417 RQWLPELRDVPGKAVHEPWKWAEKTGVTLDYPQPIVDHKEARLRTLAAYEEARKGA 472 >gi|227327531|ref|ZP_03831555.1| deoxyribodipyrimidine photolyase [Pectobacterium carotovorum subsp. carotovorum WPP14] Length = 492 Score = 526 bits (1355), Expect = e-147, Method: Composition-based stats. Identities = 275/476 (57%), Positives = 353/476 (74%), Gaps = 2/476 (0%) Query: 4 TTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYA 63 TT + H+VWLRNDLR+TDN ALYAAC + +A V+AVFIATP QW +H ++ RQ+ F+ Sbjct: 2 TTHVVTHVVWLRNDLRVTDNLALYAACQDPNASVLAVFIATPAQWEKHDMAPRQAAFLLE 61 Query: 64 SLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLL 123 +L VQ +L++KGI YH+C++F S++WL +C QQ+ T LFYN QYEINE RDK + Sbjct: 62 NLTLVQHALAEKGIPLHYHECADFAASVDWLVQFCAQQQATDLFYNYQYEINERLRDKQV 121 Query: 124 EKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIR 183 + RL V+ + DS+LLPPGS+L +MYKV+TPFR+A I+ L+++D +P P R Sbjct: 122 KDRLADSVVFHGYHDSLLLPPGSVLTGNGEMYKVFTPFRQAFIKRLLESDTTCVPAPDAR 181 Query: 184 LTGPVTPSNIPRFFDYPFQAIDP-MFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGT 242 P+ + F YP + +D FP GE+ AL LR+FC+E+V Y +QRD PA+ GT Sbjct: 182 -GEPIDNTVELAPFSYPQREVDSEDFPRGERAALQQLRRFCREQVQDYDQQRDFPALPGT 240 Query: 243 SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVC 302 S+LSPYL++G++SPRQC+NRL+ E D+L + + GAF+W NEL+WREFYRHL+ +P +C Sbjct: 241 SKLSPYLALGIVSPRQCFNRLRAECPDMLERREGGAFTWFNELVWREFYRHLIVSWPQLC 300 Query: 303 MGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLV 362 +PF WT+ ++W + L AW+QG TG+PI+DAAMRQLN GWMHNRLRMI ASFLV Sbjct: 301 KHRPFTAWTQWVKWRESPKDLAAWQQGRTGYPIVDAAMRQLNETGWMHNRLRMICASFLV 360 Query: 363 KDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQG 422 KDLL+DWR GE YFMSQLLDGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG+RFDP+G Sbjct: 361 KDLLIDWREGERYFMSQLLDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGERFDPEG 420 Query: 423 TFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478 FIRHWLPEL VP + IH PH W DK+ LNYPLPIVDHK A +TL + AAK Sbjct: 421 RFIRHWLPELAAVPDKDIHQPHRWADKHHHQLNYPLPIVDHKTARQNTLAAFEAAK 476 >gi|331672227|ref|ZP_08373018.1| deoxyribodipyrimidine photolyase [Escherichia coli TA280] gi|331070422|gb|EGI41786.1| deoxyribodipyrimidine photolyase [Escherichia coli TA280] Length = 472 Score = 526 bits (1355), Expect = e-147, Method: Composition-based stats. Identities = 251/476 (52%), Positives = 330/476 (69%), Gaps = 5/476 (1%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M+ HLVW R DLR DN AL AAC S A+V+A++IATP QW H +S RQ+ I A L Sbjct: 1 MTTHLVWFRQDLRQHDNLALAAACRYSSARVLALYIATPRQWAAHNVSPRQAELINAQLN 60 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 +Q +L++KGI +H+ +F S+E + C + RVT LFYN QYE+NE RD +E+ Sbjct: 61 GLQIALAEKGIPLLFHEVDDFAASVEIVKQVCAENRVTHLFYNYQYEVNERARDAQVERT 120 Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 L+ V+C+ FDDSV+LPPG+++ +MYKV+TPF+ A ++ L + + P +R +G Sbjct: 121 LR-NVVCEGFDDSVILPPGAVMTGNHEMYKVFTPFKNAWLKRLREGMPECVAAPKVRSSG 179 Query: 187 PVTPSNIPRFFDYPFQAIDP-MFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245 + P+ +YP Q D FP+ E+ A+ LR+FC+ Y +QRD PA++GTS+L Sbjct: 180 SIDPAPSITL-NYPRQPFDTAHFPVEEKAAIAQLRQFCQNGAGEYEQQRDFPAVEGTSRL 238 Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305 S L+ G LSPRQC +RL E L WL+ELIWREFYRHLM +YPS+C Sbjct: 239 SASLATGGLSPRQCLHRLLAEQPQALDGGAGSV--WLSELIWREFYRHLMTYYPSLCKHC 296 Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365 PFI WT++++W + LQAW++G TG+PI+DAAMRQLN+ GWMHNRLRMITASFLVKDL Sbjct: 297 PFIAWTDRVQWQSNPAHLQAWQEGKTGYPIVDAAMRQLNSTGWMHNRLRMITASFLVKDL 356 Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425 L+DWR GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG++FD +G FI Sbjct: 357 LIDWREGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGEKFDREGEFI 416 Query: 426 RHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481 R WLPEL +VP + +H P W K ++L+YP PIVDHK+A TL Y A+K + Sbjct: 417 RQWLPELRDVPGKVVHEPWKWAQKAGVTLDYPQPIVDHKEARLRTLAAYEEARKGA 472 >gi|331682139|ref|ZP_08382761.1| deoxyribodipyrimidine photo-lyase (DNA photolyase)(Photoreactivating enzyme) [Escherichia coli H299] gi|331080563|gb|EGI51739.1| deoxyribodipyrimidine photo-lyase (DNA photolyase)(Photoreactivating enzyme) [Escherichia coli H299] Length = 472 Score = 526 bits (1355), Expect = e-147, Method: Composition-based stats. Identities = 250/476 (52%), Positives = 329/476 (69%), Gaps = 5/476 (1%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M+ HLVW R DLR DN AL AAC NS A V+A++IATP QW H +S RQ+ I A L Sbjct: 1 MTTHLVWFRQDLRQHDNLALAAACRNSSASVLALYIATPRQWAAHNMSPRQAELINAQLN 60 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 +Q +L++KGI + + +F S+E + C + VT LFYN QYE+NE RD +E+ Sbjct: 61 GLQIALAEKGIPLLFREVDDFAASVEIVKQVCAENSVTHLFYNYQYEVNERARDVQVERT 120 Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 L+ V+C+ FDDSV+LPPG+++ +MYKV+TPF+ A ++ L + + P +R +G Sbjct: 121 LR-NVVCEGFDDSVILPPGAVMTDNHEMYKVFTPFQNAWLKRLREGMPECVAAPKVRSSG 179 Query: 187 PVTPSNIPRFFDYPFQAIDP-MFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245 + P+ +YP Q+ D FP+ E+ A+ LR+FC+ Y +QRD PA++GTS+L Sbjct: 180 SIKPAPSITL-NYPRQSFDTAHFPVEEKAAIAQLRQFCQNGAGEYEQQRDFPAVEGTSRL 238 Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305 S L+ G LSPRQC +RL E L WL+ELIWREFYRHLM +YPS+C Sbjct: 239 SASLATGGLSPRQCLHRLLAEQPQALDGGAGSV--WLSELIWREFYRHLMTYYPSLCKHC 296 Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365 PFI WT++++W + LQAW++G TG+PI+DAAMRQLN+ GWMHNRLRMITASFLVKDL Sbjct: 297 PFIAWTDRVQWQSNPAHLQAWQEGKTGYPIVDAAMRQLNSTGWMHNRLRMITASFLVKDL 356 Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425 L+DWR GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG++FD +G FI Sbjct: 357 LIDWREGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGEKFDREGEFI 416 Query: 426 RHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481 R WLPEL +VP + +H P W K ++L+YP PIVDHK+A TL Y A+K + Sbjct: 417 RQWLPELRDVPGKVVHEPWKWAQKAGMTLDYPQPIVDHKEARLRTLAAYEEARKGA 472 >gi|306812880|ref|ZP_07447073.1| deoxyribodipyrimidine photolyase [Escherichia coli NC101] gi|305853643|gb|EFM54082.1| deoxyribodipyrimidine photolyase [Escherichia coli NC101] gi|324006250|gb|EGB75469.1| FAD binding domain of DNA photolyase [Escherichia coli MS 57-2] Length = 472 Score = 526 bits (1354), Expect = e-147, Method: Composition-based stats. Identities = 249/476 (52%), Positives = 332/476 (69%), Gaps = 5/476 (1%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M+ HLVW R DLR DN AL AAC NS A+V+A++IATP QW H +S RQ+ I L Sbjct: 1 MTTHLVWFRQDLRQHDNLALAAACRNSSARVLALYIATPRQWAAHNVSPRQAELINTQLN 60 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 +Q +L++KGI + + +F S+E + C + R+T LFYN QYE+NE RD E+ Sbjct: 61 ALQNALAEKGIPLLFREVDDFAASVETVKQVCAENRITHLFYNYQYEVNERARDVQAERT 120 Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 L+ V+C+ FDDSV+LPPG+++ +MYKV+TPF+ A ++ L + + P +R +G Sbjct: 121 LR-NVVCEGFDDSVILPPGAVMTGNHEMYKVFTPFKNAWLKRLREGMPECVAAPKVRSSG 179 Query: 187 PVTPSNIPRFFDYPFQAIDP-MFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245 + P+ +YP Q+ D FP+ E+ A+ LR+FC+ Y +QRD PA++GTS+L Sbjct: 180 SIEPAPSITL-NYPRQSFDTAHFPVEEKAAIAQLRQFCQNGAGEYEQQRDFPAVEGTSRL 238 Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305 S L+ G LSPRQC +RL E +L WLNELIWREFYRHLM +YPS+C + Sbjct: 239 SASLATGGLSPRQCLHRLLAEQPQVLEGGPGSV--WLNELIWREFYRHLMTYYPSLCKHR 296 Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365 PFI WT++++W + L+AW++G TG+PI+DAAMRQLN+ GWMHNRLRMITASFLVKDL Sbjct: 297 PFIAWTDRVQWQSNPAHLKAWQEGKTGYPIVDAAMRQLNSTGWMHNRLRMITASFLVKDL 356 Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425 L+DWR GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG++FD +G FI Sbjct: 357 LIDWREGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGEKFDREGEFI 416 Query: 426 RHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481 R WLPEL +VP + +H P W +K ++L+YP PIVDHK+A TL Y A+K + Sbjct: 417 RQWLPELRDVPGKAVHEPWKWAEKTGVTLDYPQPIVDHKEARLRTLAAYEEARKGA 472 >gi|333007384|gb|EGK26864.1| deoxyribodipyrimidine photo-lyase [Shigella flexneri VA-6] Length = 472 Score = 525 bits (1353), Expect = e-147, Method: Composition-based stats. Identities = 248/474 (52%), Positives = 328/474 (69%), Gaps = 5/474 (1%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M+ HL W R DLR+ DN AL AAC NS A+V+A++IATP QW H +S RQ+ I A L Sbjct: 1 MTTHLAWFRQDLRLHDNLALAAACRNSSARVLALYIATPRQWETHNMSPRQAELINAQLN 60 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 +Q +L++KGI + + +F S+E + C + VT LFYN QYE+NE RD +E+ Sbjct: 61 GLQIALAEKGIPLLFREVDDFVASVEIVKQVCAENSVTHLFYNYQYEVNERARDVDVERA 120 Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 L+ V+C+ FDDSV+LPPG+++ +MYKV+TPF+ A ++ L + + P +R +G Sbjct: 121 LR-NVVCEGFDDSVILPPGAVMTGNHEMYKVFTPFKNAWLKRLREGMPECVAAPKVRSSG 179 Query: 187 PVTPSNIPRFFDYPFQAIDP-MFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245 + P+ +YP Q+ D FP+ E+ A+ LR+FC+ Y +QRD PA++GTS+L Sbjct: 180 SIKPAPSITL-NYPRQSFDTAHFPVEEKAAIAQLRQFCENGAGEYEQQRDFPAVEGTSRL 238 Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305 S L+ G LSPRQC +RL E L WL+ELIWREFYRHLM +YPS+C + Sbjct: 239 SASLATGGLSPRQCLHRLLAEQPQALDGGAGSV--WLSELIWREFYRHLMTYYPSLCKHR 296 Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365 PFI WT++++W + LQAW++G TG+PIIDAAMRQLN+ GWMHNRLRMITASFLVKDL Sbjct: 297 PFIAWTDRVQWQSNPAHLQAWQKGKTGYPIIDAAMRQLNSTGWMHNRLRMITASFLVKDL 356 Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425 L+DWR GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNP QG++FD +G FI Sbjct: 357 LIDWREGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPITQGEKFDREGEFI 416 Query: 426 RHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479 R WLPEL +VP + +H P W K + L+YP PIV+HK+A TL Y A+K Sbjct: 417 RRWLPELRDVPGKAVHEPWKWAQKAGVKLDYPQPIVEHKEARVQTLAAYETARK 470 >gi|50120288|ref|YP_049455.1| deoxyribodipyrimidine photolyase [Pectobacterium atrosepticum SCRI1043] gi|49610814|emb|CAG74259.1| deoxyribodipyrimidine photolyase [Pectobacterium atrosepticum SCRI1043] Length = 497 Score = 525 bits (1353), Expect = e-147, Method: Composition-based stats. Identities = 271/475 (57%), Positives = 342/475 (72%) Query: 4 TTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYA 63 T H+VWLRNDLRITDN ALYAAC + A V+AVFIATP QW +H ++ RQ+ F+ Sbjct: 7 THHAVTHVVWLRNDLRITDNLALYAACQDPSATVLAVFIATPAQWEKHDMAPRQAAFLLE 66 Query: 64 SLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLL 123 +L VQ L++KGI YH+C++F S++WL +C +Q+ T LFYN QYEINE RDK + Sbjct: 67 NLTLVQHVLAEKGIPLHYHECADFAASVDWLMQFCAEQQATDLFYNHQYEINERLRDKQV 126 Query: 124 EKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIR 183 + RL V+C + DS+LLPPGS+L +MYKV+TPFR+A I+ L++AD +P P R Sbjct: 127 KDRLADSVVCHGYHDSLLLPPGSVLTGNGEMYKVFTPFRQAFIKRLLEADTTCVPAPDAR 186 Query: 184 LTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS 243 + + F + FP GE+ AL LR+FC+E+V Y +QRD PA+ GTS Sbjct: 187 GEPINNTAELVPFSYPQCEVDSEDFPCGERAALQQLRRFCREQVQDYDQQRDFPALPGTS 246 Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCM 303 +LSPYL++G++SPRQC+NRL+ E D+L + + GAF+W NEL+WREFYRHL+ +P +C Sbjct: 247 KLSPYLALGIVSPRQCFNRLRAECPDMLERREGGAFTWFNELVWREFYRHLIVSWPQLCK 306 Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363 +PF WT+ ++W + L AW+QG TG+PI+DAAM QLN GWMHNRLRMI ASFLVK Sbjct: 307 HRPFTAWTQWVKWRESPEDLTAWQQGKTGYPIVDAAMHQLNETGWMHNRLRMICASFLVK 366 Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423 DLL+DWR GE YFMSQLLDGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG+RFDP G Sbjct: 367 DLLIDWREGERYFMSQLLDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGERFDPDGR 426 Query: 424 FIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478 FIRHWLPEL VP + IH PH W DK + LNYPLPIVDHK A TL + AAK Sbjct: 427 FIRHWLPELAAVPDKDIHQPHRWADKQHVKLNYPLPIVDHKTARLDTLAAFEAAK 481 >gi|170681516|ref|YP_001742812.1| deoxyribodipyrimidine photolyase [Escherichia coli SMS-3-5] gi|300937834|ref|ZP_07152629.1| FAD binding domain of DNA photolyase [Escherichia coli MS 21-1] gi|170519234|gb|ACB17412.1| deoxyribodipyrimidine photolyase [Escherichia coli SMS-3-5] gi|300457153|gb|EFK20646.1| FAD binding domain of DNA photolyase [Escherichia coli MS 21-1] Length = 472 Score = 525 bits (1353), Expect = e-147, Method: Composition-based stats. Identities = 251/476 (52%), Positives = 331/476 (69%), Gaps = 5/476 (1%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M+ HLVW R DLR DN AL AAC NS +V+A++IATP QW H +S RQ+ FI A L Sbjct: 1 MTTHLVWFRQDLRQHDNLALAAACRNSSVRVLALYIATPRQWAAHNMSPRQAEFINAQLN 60 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 +Q +L++KGI +H+ +F S+E + C + RVT LFYN QYE+NE RD E+ Sbjct: 61 GLQIALAEKGIPLLFHEVDDFAASVEIVKQVCAENRVTHLFYNYQYEVNERARDVQAERA 120 Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 L+ V+C+ FDD V+LPPG+++ +MYKV+TPF+ A ++ L + + P +R +G Sbjct: 121 LR-NVVCEGFDDGVILPPGAVMTGNHEMYKVFTPFKNAWLKRLREGMPECVAAPKVRSSG 179 Query: 187 PVTPSNIPRFFDYPFQAIDP-MFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245 + P+ +YP Q D FP+ E+ A+ LR+FC+ Y +QRD PA++GTS+L Sbjct: 180 SIDPAPSITL-NYPRQPFDTAHFPVEEKAAIAQLRQFCQNGAGEYEQQRDFPAVEGTSRL 238 Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305 S L+ G LSPRQC +RL E L WLNELIWREFYRHL+ +YPS+C + Sbjct: 239 SASLATGGLSPRQCLHRLLAEQPQALDGGAGSI--WLNELIWREFYRHLITYYPSLCKHR 296 Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365 PFI WT++++W +S L+AW++G TG+PI+DAAMRQLN+ GWMHNRLRMITASFLVKDL Sbjct: 297 PFIVWTDRVQWQSNSAHLKAWQEGKTGYPIVDAAMRQLNSTGWMHNRLRMITASFLVKDL 356 Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425 L+DWR GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG++FD +G FI Sbjct: 357 LIDWREGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGEKFDREGEFI 416 Query: 426 RHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481 R WLPEL +VP + +H P W K ++L+YP PIVDHK+A TL Y A+K + Sbjct: 417 RQWLPELRDVPGKVVHEPWKWAQKAGVTLDYPQPIVDHKEARLRTLAAYEEARKGA 472 >gi|323191055|gb|EFZ76320.1| deoxyribodipyrimidine photo-lyase [Escherichia coli RN587/1] Length = 472 Score = 525 bits (1353), Expect = e-147, Method: Composition-based stats. Identities = 251/476 (52%), Positives = 330/476 (69%), Gaps = 5/476 (1%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M+ HLVW R DLR DN AL AAC S A+V+A++IATP QW H +S RQ+ I A L Sbjct: 1 MTTHLVWFRQDLRQHDNLALAAACRYSSARVLALYIATPRQWAAHNVSPRQAELINAQLN 60 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 +Q +L++KGI +H+ +F S+E + C + RVT LFYN QYE+NE RD +E+ Sbjct: 61 GLQIALAEKGIPLLFHEVDDFAASVEIVKQVCAENRVTHLFYNYQYEVNERARDAQVERT 120 Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 L+ V+C+ FDDSV+LPPG+++ +MYKV+TPF+ A ++ L + + P +R +G Sbjct: 121 LR-NVVCEGFDDSVILPPGAVMTGNHEMYKVFTPFKNAWLKRLREGMPECVAAPKVRSSG 179 Query: 187 PVTPSNIPRFFDYPFQAIDP-MFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245 + P+ +YP Q D FP+ E+ A+ LR+FC+ Y +QRD PA++GTS+L Sbjct: 180 SIDPAPSITL-NYPRQPFDTAHFPVEEKAAIAQLRQFCQNGAGEYEQQRDFPAVEGTSRL 238 Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305 S L+ G LSPRQC +RL E L WL+ELIWREFYRHLM +YPS+C Sbjct: 239 SASLATGGLSPRQCLHRLLAEQPQALDGGAGSV--WLSELIWREFYRHLMTYYPSLCKHC 296 Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365 PFI WT++++W + LQAW++G TG+PI+DAAMRQLN+ GWMHNRLRMITASFLVKDL Sbjct: 297 PFIAWTDRVQWQSNPAHLQAWQEGKTGYPIVDAAMRQLNSTGWMHNRLRMITASFLVKDL 356 Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425 L+DWR GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG++FD +G FI Sbjct: 357 LIDWREGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGEKFDREGEFI 416 Query: 426 RHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481 R WLPEL +VP + +H P W K ++L+YP PIVDHK+A TL Y A+K + Sbjct: 417 RQWLPELRDVPGKVVHEPWKWAQKAGMTLDYPQPIVDHKEARLRTLAAYEEARKGA 472 >gi|253687618|ref|YP_003016808.1| Deoxyribodipyrimidine photo-lyase [Pectobacterium carotovorum subsp. carotovorum PC1] gi|251754196|gb|ACT12272.1| Deoxyribodipyrimidine photo-lyase [Pectobacterium carotovorum subsp. carotovorum PC1] Length = 497 Score = 525 bits (1353), Expect = e-147, Method: Composition-based stats. Identities = 278/477 (58%), Positives = 353/477 (74%), Gaps = 2/477 (0%) Query: 3 ATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIY 62 AT + HLVWLRNDLRITDN AL AAC + +A V+AVFIATP QW +H ++ RQ+ F+ Sbjct: 6 ATHHAATHLVWLRNDLRITDNLALSAACQDPNATVLAVFIATPAQWEKHDMAPRQAAFLL 65 Query: 63 ASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKL 122 +L VQ +L++KGI YH+C++F S++WL +C QQ+ T LFYN QYEINE RDK Sbjct: 66 ENLTSVQHALAEKGIPLHYHECADFAASVDWLVQFCAQQQATDLFYNYQYEINERLRDKQ 125 Query: 123 LEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAI 182 ++ RL V+C + DS+LLPPGS+L +MYKV+TPFR+A I+ L++A+ +P P Sbjct: 126 VKDRLADSVVCHGYHDSLLLPPGSVLTGNGEMYKVFTPFRQAFIKRLLEAETTCVPAPDA 185 Query: 183 RLTGPVTPSNIPRFFDYPFQAIDP-MFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQG 241 R P+ F YP + +D FP GE+ AL LR+FC+E+V Y QRD+PA+ G Sbjct: 186 R-GEPIHNMMALAPFSYPQREVDSDDFPCGERAALQQLRRFCREQVQDYDRQRDVPALPG 244 Query: 242 TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSV 301 TS+LSPYL++G++SPRQC+NRL+ E D+L + + GAF+W NEL+WREFYRHL+ +P + Sbjct: 245 TSKLSPYLALGIVSPRQCFNRLRAECPDMLERREGGAFTWFNELVWREFYRHLIVSWPQL 304 Query: 302 CMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFL 361 C +PF WT+ ++W + S L AW+QG TG+PI+DAAMRQLN GWMHNRLRMI ASFL Sbjct: 305 CKHRPFTAWTQWVKWRESSEDLTAWQQGKTGYPIVDAAMRQLNGTGWMHNRLRMICASFL 364 Query: 362 VKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQ 421 VKDLL+DWR GE YFMSQLLDGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG+RFDP+ Sbjct: 365 VKDLLIDWREGERYFMSQLLDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGERFDPE 424 Query: 422 GTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478 G FIRHWLPEL VP + IH PH W DK+ LNYPLPIVDHK A +TL + AAK Sbjct: 425 GRFIRHWLPELAAVPDKDIHQPHRWADKHHHQLNYPLPIVDHKTARQNTLAAFEAAK 481 >gi|324116248|gb|EGC10169.1| DNA photolyase [Escherichia coli E1167] Length = 472 Score = 525 bits (1353), Expect = e-147, Method: Composition-based stats. Identities = 248/476 (52%), Positives = 327/476 (68%), Gaps = 5/476 (1%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M HLVW R DLR+ DN AL AAC NS A+V+A++IATP QW H +S RQ+ I A L Sbjct: 1 MITHLVWFRQDLRLHDNLALAAACRNSSARVLALYIATPRQWATHNMSPRQAELINAQLN 60 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 +Q +L++KGI + + +F S+E + C + VT LFYN QYE+NE RD +E+ Sbjct: 61 GLQIALAEKGIPLLFREVDDFVASVEIVKQVCAENSVTHLFYNYQYEVNERARDVEVERA 120 Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 L+ V+C+ FDDSV+LPPG+++ +MYKV+TPF+ A ++ L + + P +R +G Sbjct: 121 LR-NVVCEGFDDSVILPPGAVMTGNHEMYKVFTPFKNAWLKRLREGMPECVAAPKVRSSG 179 Query: 187 PVTPSNIPRFFDYPFQAIDP-MFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245 + P+ +YP Q+ D FP+ E+ A+ LR+FC+ Y +QRD PA++GTS+L Sbjct: 180 SIEPAPSITL-NYPRQSFDTAHFPVEEKAAIAQLRQFCQNGAGEYEQQRDFPAVEGTSRL 238 Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305 S L+ G LSPRQC +RL E L WL+ELIWREFYRHLM +YPS+C Sbjct: 239 SASLATGGLSPRQCLHRLLAEQPQALDGGAGSV--WLSELIWREFYRHLMTYYPSLCKHC 296 Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365 PFI WT++++W + LQAW++G TG+PI+DAAMRQLN+ GWMHNRLRMITASFLVKDL Sbjct: 297 PFIAWTDRVQWQSNPAHLQAWQKGKTGYPIVDAAMRQLNSTGWMHNRLRMITASFLVKDL 356 Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425 L+DWR GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNP QG++FD +G FI Sbjct: 357 LIDWREGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPITQGEKFDREGEFI 416 Query: 426 RHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481 R WLPEL +VP + +H P W K + L+YP IVDHK+A TL Y A+K + Sbjct: 417 RRWLPELRDVPGKAVHEPWKWAQKAGVKLDYPQLIVDHKEARLRTLAAYEEARKGA 472 >gi|161615066|ref|YP_001589031.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|161364430|gb|ABX68198.1| hypothetical protein SPAB_02826 [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] Length = 500 Score = 525 bits (1352), Expect = e-147, Method: Composition-based stats. Identities = 251/479 (52%), Positives = 335/479 (69%), Gaps = 4/479 (0%) Query: 4 TTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYA 63 + M HLVW R DLR+ DN AL AAC ++ A+V+A++I+TP QW+ H ++ RQ+ FI A Sbjct: 25 RSCMPTHLVWFRRDLRLQDNLALAAACRDASARVLALYISTPAQWQAHDMAPRQAAFISA 84 Query: 64 SLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLL 123 L +Q +L++KGI +H+ ++F+ SIE + + C Q V+ LFYN QYE NE +RD + Sbjct: 85 QLNALQAALAEKGIPLLFHEVADFNASIETVKNVCRQHDVSHLFYNYQYEFNERQRDAAV 144 Query: 124 EKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIR 183 EK L VIC+ FDDSV+L PG+++ +MYKV+TPF+ A ++ L + +P P IR Sbjct: 145 EKTLPS-VICEGFDDSVILAPGAVMTGNHEMYKVFTPFKNAWLKRLKEDIPPCVPAPKIR 203 Query: 184 LTGPVTPSNIPRFFDYPFQAIDP-MFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGT 242 ++G ++ P +YP QA D +FP+ E + LR+FC + Y +RD PA+ GT Sbjct: 204 VSGALSTPLTPVSLNYPQQAFDAALFPVEENAVIAQLRQFCAQGADGYESRRDFPAVDGT 263 Query: 243 SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVC 302 S+LS L+ G LSPRQC +RL E L WLNELIWREFYRHLM +YP++C Sbjct: 264 SRLSASLATGGLSPRQCLHRLLAEQPQALDGGPGSV--WLNELIWREFYRHLMTWYPALC 321 Query: 303 MGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLV 362 +PFI WT+++ W ++ H QAW++G TG+PI+DAAMRQLN GWMHNRLRMITASFLV Sbjct: 322 KHQPFIRWTKRVAWQENPHYFQAWQKGETGYPIVDAAMRQLNATGWMHNRLRMITASFLV 381 Query: 363 KDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQG 422 KDLL+DWR+GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG+RFD G Sbjct: 382 KDLLIDWRLGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGERFDRDG 441 Query: 423 TFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481 FIR WLP L ++P + IH P W +K + L+YP PIV+HK+A TL+ Y AA+K + Sbjct: 442 EFIRQWLPALRDIPGKAIHEPWRWAEKAGVVLDYPRPIVEHKQARIATLSAYEAARKGA 500 >gi|85058846|ref|YP_454548.1| deoxyribodipyrimidine photolyase [Sodalis glossinidius str. 'morsitans'] gi|84779366|dbj|BAE74143.1| deoxyribodipyrimidine photolyase [Sodalis glossinidius str. 'morsitans'] Length = 481 Score = 525 bits (1352), Expect = e-147, Method: Composition-based stats. Identities = 265/475 (55%), Positives = 337/475 (70%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M++HLVWLRNDLR+ DN AL+AAC ++ A+V+AVFIATP+QWR H +S RQ+ FI +L Sbjct: 1 MTIHLVWLRNDLRLHDNTALHAACQDTQARVLAVFIATPQQWRDHDMSPRQAAFIRQNLR 60 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 + + L+ +GI YHQC++F +EWL ++C ++RV KLFYN QYE+NE RD+ LE+R Sbjct: 61 HLAEELAARGIALHYHQCADFAAQVEWLAAFCQRERVDKLFYNYQYELNERERDRRLEQR 120 Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 + + +C+ FDDSVLLPPGS+ QMYKVYTPFR A + L + D LP P+ R Sbjct: 121 IGEKTLCQGFDDSVLLPPGSVHTGNQQMYKVYTPFRNAFLGRLEEQDPACLPAPSPRAGA 180 Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246 P FDYP +P GE AL LR FC +++ Y RDIPA+ TS+LS Sbjct: 181 PCAKVCEIAPFDYPMTPPGEAYPAGEAAALSRLRTFCHQQLQDYHRGRDIPALDATSRLS 240 Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP 306 +L++GVLSPRQC+ RL++ + L ++GAF+WLNELIWR+FYRHL+ +P++C +P Sbjct: 241 AWLAVGVLSPRQCYQRLRKAYPRALTPGQNGAFTWLNELIWRDFYRHLLVAWPALCRYQP 300 Query: 307 FIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLL 366 FIPWT + W +D L AW G TG+PI+DAAMRQL GWMHNRLRMI+ASFLVKDLL Sbjct: 301 FIPWTRHVVWRQDDDLFDAWCAGRTGYPIVDAAMRQLAETGWMHNRLRMISASFLVKDLL 360 Query: 367 VDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIR 426 +DWR GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG+RFD G FIR Sbjct: 361 IDWRRGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGERFDGDGAFIR 420 Query: 427 HWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481 WLP L +VP Y+H P+ W D L+YPLPIVDH KA L+ Y AAK + Sbjct: 421 RWLPALESVPDTYLHQPNRWPDAQRAGLDYPLPIVDHGKARAWALDAYEAAKARG 475 >gi|26246677|ref|NP_752717.1| deoxyribodipyrimidine photolyase [Escherichia coli CFT073] gi|227884323|ref|ZP_04002128.1| deoxyribodipyrimidine photolyase [Escherichia coli 83972] gi|300989880|ref|ZP_07179009.1| FAD binding domain of DNA photolyase [Escherichia coli MS 45-1] gi|301046034|ref|ZP_07193214.1| FAD binding domain of DNA photolyase [Escherichia coli MS 185-1] gi|26107076|gb|AAN79260.1|AE016757_164 Deoxyribodipyrimidine photolyase [Escherichia coli CFT073] gi|227838409|gb|EEJ48875.1| deoxyribodipyrimidine photolyase [Escherichia coli 83972] gi|300301951|gb|EFJ58336.1| FAD binding domain of DNA photolyase [Escherichia coli MS 185-1] gi|300407283|gb|EFJ90821.1| FAD binding domain of DNA photolyase [Escherichia coli MS 45-1] gi|307552561|gb|ADN45336.1| deoxyribodipyrimidine photolyase PhrB [Escherichia coli ABU 83972] gi|315292023|gb|EFU51375.1| FAD binding domain of DNA photolyase [Escherichia coli MS 153-1] Length = 472 Score = 525 bits (1352), Expect = e-147, Method: Composition-based stats. Identities = 250/476 (52%), Positives = 331/476 (69%), Gaps = 5/476 (1%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M+ HLVW R DLR DN AL AAC NS A+V+A++IATP QW H +S RQ+ I L Sbjct: 1 MTTHLVWFRQDLRQHDNLALAAACRNSSARVLALYIATPRQWAAHNVSPRQAELINTQLN 60 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 +Q +L++KGI + + +F S+E + C + RVT LFYN QYE+NE RD E+ Sbjct: 61 ALQIALAEKGIPLLFREVDDFAASVEIVKQVCAEYRVTHLFYNYQYEVNERARDVQAERT 120 Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 L+ V+C+ FDDSV+LPPG+++ +MYKV+TPF+ A ++ L + + P +R +G Sbjct: 121 LR-NVVCEGFDDSVILPPGAVMTGNHEMYKVFTPFKNAWLKRLREGMPECVAAPKVRSSG 179 Query: 187 PVTPSNIPRFFDYPFQAIDP-MFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245 + P+ +YP Q+ D FP+ E+ A+ LR+FC Y +QRD PA++GTS+L Sbjct: 180 SIEPAPSITL-NYPRQSFDTAHFPVEEKAAIAQLRQFCLNGAGEYEQQRDFPAVEGTSRL 238 Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305 S L+ G LSPRQC +RL E +L WLNELIWREFYRHLM +YPS+C + Sbjct: 239 SASLATGGLSPRQCLHRLLAEQPQVLEGGPGSV--WLNELIWREFYRHLMTYYPSLCKHR 296 Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365 PFI WT++++W + L+AW++G TG+PI+DAAMRQLN+ GWMHNRLRMITASFLVKDL Sbjct: 297 PFIAWTDRVQWQSNPAHLKAWQEGKTGYPIVDAAMRQLNSTGWMHNRLRMITASFLVKDL 356 Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425 L+DWR GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG++FD +G FI Sbjct: 357 LIDWREGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGEKFDREGEFI 416 Query: 426 RHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481 R WLPEL +VP + +H P W +K ++L+YP PIVDHK+A TL Y A+K + Sbjct: 417 RQWLPELRDVPGKAVHEPWKWAEKTGVTLDYPQPIVDHKEARLRTLAAYEEARKGA 472 >gi|218699057|ref|YP_002406686.1| deoxyribodipyrimidine photolyase [Escherichia coli IAI39] gi|218369043|emb|CAR16797.1| deoxyribodipyrimidine photolyase, FAD-binding [Escherichia coli IAI39] Length = 472 Score = 525 bits (1352), Expect = e-147, Method: Composition-based stats. Identities = 249/476 (52%), Positives = 329/476 (69%), Gaps = 5/476 (1%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M+ HLVW R DLR DN AL AAC NS +V+A++IATP QW H +S RQ+ FI A L Sbjct: 1 MTTHLVWFRQDLRQHDNLALAAACRNSSVRVLALYIATPRQWAAHNMSPRQAEFINAQLN 60 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 +Q +L++KGI +H+ +F S+E + C + RVT LFYN QYE+NE RD E+ Sbjct: 61 GLQIALAEKGIPLLFHEVDDFAASVEIVKQVCAENRVTHLFYNYQYEVNERARDVQAERA 120 Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 L+ V+C+ FDD V+LPPG+++ +MYKV+TPF+ A ++ L + + P +R +G Sbjct: 121 LR-NVVCEGFDDGVILPPGAVMTGNHEMYKVFTPFKNAWLKRLREGMPECVAAPKVRSSG 179 Query: 187 PVTPSNIPRFFDYPFQAIDP-MFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245 + P+ +YP Q D FP+ E+ A+ LR+FC+ Y +QRD PA++GTS+L Sbjct: 180 SIDPAPSITL-NYPRQPFDTAHFPVEEKAAIAQLRQFCQNGAGEYEQQRDFPAVEGTSRL 238 Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305 S L+ G LSPRQC +RL E L WLNELIWREFYRHLM +YP +C + Sbjct: 239 SASLATGGLSPRQCLHRLLAEQPQALDGGAGSV--WLNELIWREFYRHLMTYYPLLCKHR 296 Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365 PFI WT++++W ++ +AW++G TG+PI+DAAMRQLN+ GWMHNRLRMITASFLVKDL Sbjct: 297 PFIVWTDRVQWQRNPAHFKAWQEGKTGYPIVDAAMRQLNSTGWMHNRLRMITASFLVKDL 356 Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425 L+DWR GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG++FD +G FI Sbjct: 357 LIDWREGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGEKFDREGEFI 416 Query: 426 RHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481 R WLPEL +VP + +H P W K ++L+YP PIVDHK+A TL Y A+K + Sbjct: 417 RQWLPELRDVPGKVVHEPWKWAQKAGVTLDYPQPIVDHKEARLRTLAAYEEARKGA 472 >gi|145598860|ref|YP_001162936.1| deoxyribodipyrimidine photolyase [Yersinia pestis Pestoides F] gi|145210556|gb|ABP39963.1| Deoxyribodipyrimidine photo-lyase type I [Yersinia pestis Pestoides F] Length = 487 Score = 524 bits (1351), Expect = e-147, Method: Composition-based stats. Identities = 277/477 (58%), Positives = 344/477 (72%), Gaps = 4/477 (0%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 MS HLVW RNDLR+TDN AL+AAC + A VIAVFIATP QW HG++ RQ+ F+ +L Sbjct: 1 MSTHLVWFRNDLRVTDNLALHAACQDPQASVIAVFIATPVQWAAHGMAPRQAAFLRQNLQ 60 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 +Q +L+ +GI YHQC +F S WL +C QQ+V LFY++QYE+NE RD L + Sbjct: 61 HLQAALAARGIPLHYHQCDDFQASNTWLVDFCQQQQVDSLFYSQQYELNERLRDDALAVQ 120 Query: 127 LQHR-VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185 L R + C+SF DSVLL PG++L +MYKV+TPFR+A IQ L+ +D +P P R Sbjct: 121 LSERAITCQSFHDSVLLAPGTVLTGNNEMYKVFTPFRRAFIQRLLMSDNHCVPAPKARHA 180 Query: 186 GPVTPSNIPRFFDYPFQAIDP-MFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244 PV S +P FDYP Q++D +FP GE AL LR+FC+E+V Y + RD+PA+ GTS Sbjct: 181 PPVLLSPLP--FDYPQQSVDSQLFPAGEDAALQRLRRFCREQVQDYRQYRDLPAVPGTSC 238 Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304 LSPYL +GVLSPRQC+NRL E ++L SGAF+WLNELIWREFYRHL+ YP +C Sbjct: 239 LSPYLVLGVLSPRQCFNRLWAESPEMLENADSGAFTWLNELIWREFYRHLLVAYPRLCQH 298 Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364 PFI WT+ + WN+ L+AW+QG TG+PI+DAAMRQ+N GWMHNRLRMI+ASFLVKD Sbjct: 299 HPFIGWTDGLVWNRSESQLKAWQQGQTGYPIVDAAMRQMNETGWMHNRLRMISASFLVKD 358 Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424 LL+DWR GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG+RFD G F Sbjct: 359 LLIDWRQGERYFMSQLVDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGERFDKDGVF 418 Query: 425 IRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481 IR WLPEL VP IH P W ++ L+YP P+VDHK+A TL + AAK+ S Sbjct: 419 IRRWLPELAAVPDSDIHQPWRWAERQQQHLDYPAPLVDHKQARLATLAAFEAAKRDS 475 >gi|117622905|ref|YP_851818.1| deoxyribodipyrimidine photolyase [Escherichia coli APEC O1] gi|218557628|ref|YP_002390541.1| deoxyribodipyrimidine photolyase [Escherichia coli S88] gi|237707328|ref|ZP_04537809.1| deoxyribodipyrimidine photolyase [Escherichia sp. 3_2_53FAA] gi|115512029|gb|ABJ00104.1| deoxyribodipyrimidine photolyase [Escherichia coli APEC O1] gi|218364397|emb|CAR02076.1| deoxyribodipyrimidine photolyase, FAD-binding [Escherichia coli S88] gi|226898538|gb|EEH84797.1| deoxyribodipyrimidine photolyase [Escherichia sp. 3_2_53FAA] gi|294490015|gb|ADE88771.1| deoxyribodipyrimidine photo-lyase [Escherichia coli IHE3034] gi|307627874|gb|ADN72178.1| deoxyribodipyrimidine photolyase [Escherichia coli UM146] gi|315287176|gb|EFU46588.1| FAD binding domain of DNA photolyase [Escherichia coli MS 110-3] gi|320194132|gb|EFW68764.1| Deoxyribodipyrimidine photolyase [Escherichia coli WV_060327] gi|323952730|gb|EGB48598.1| DNA photolyase [Escherichia coli H252] gi|323958455|gb|EGB54161.1| DNA photolyase [Escherichia coli H263] Length = 472 Score = 524 bits (1351), Expect = e-146, Method: Composition-based stats. Identities = 249/476 (52%), Positives = 331/476 (69%), Gaps = 5/476 (1%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M+ HLVW R DLR DN AL AAC NS A+V+A++IATP QW H +S RQ+ I L Sbjct: 1 MTTHLVWFRQDLRQHDNLALAAACRNSSARVLALYIATPRQWAAHNVSPRQAELINTQLN 60 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 +Q +L++KGI + + +F S+E + C + R+T LFYN QYE+NE RD E+ Sbjct: 61 ALQNALAEKGIPLLFREVDDFAASVETVKQVCAENRITHLFYNYQYEVNERARDVQAERT 120 Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 L+ V+C+ FDDSV+LPPG+++ +MYKV+TPF+ A ++ L + + P R +G Sbjct: 121 LR-NVVCEGFDDSVILPPGAVMTGNHEMYKVFTPFKNAWLKRLREGMPECVAAPKFRSSG 179 Query: 187 PVTPSNIPRFFDYPFQAIDP-MFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245 + P+ +YP Q+ D FP+ E+ A+ LR+FC+ Y +QRD PA++GTS+L Sbjct: 180 SIEPAPSITL-NYPRQSFDTAHFPVEEKAAIAQLRQFCQNGAGEYEQQRDFPAVEGTSRL 238 Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305 S L+ G LSPRQC +RL E +L WLNELIWREFYRHLM +YPS+C + Sbjct: 239 SASLATGGLSPRQCLHRLLAEQPQVLEGGPGSV--WLNELIWREFYRHLMTYYPSLCKHR 296 Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365 PFI WT++++W + L+AW++G TG+PI+DAAMRQLN+ GWMHNRLRMITASFLVKDL Sbjct: 297 PFIAWTDRVQWQSNPAHLKAWQEGKTGYPIVDAAMRQLNSTGWMHNRLRMITASFLVKDL 356 Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425 L+DWR GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG++FD +G FI Sbjct: 357 LIDWREGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGEKFDREGEFI 416 Query: 426 RHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481 R WLPEL +VP + +H P W +K ++L+YP PIVDHK+A TL Y A+K + Sbjct: 417 RQWLPELRDVPGKAVHEPWKWAEKTGVTLDYPQPIVDHKEARLRTLAAYEEARKGA 472 >gi|82775975|ref|YP_402322.1| deoxyribodipyrimidine photolyase [Shigella dysenteriae Sd197] gi|309786366|ref|ZP_07680992.1| deoxyribodipyrimidine photo-lyase [Shigella dysenteriae 1617] gi|81240123|gb|ABB60833.1| deoxyribodipyrimidine photolyase [Shigella dysenteriae Sd197] gi|308925760|gb|EFP71241.1| deoxyribodipyrimidine photo-lyase [Shigella dysenteriae 1617] Length = 472 Score = 524 bits (1350), Expect = e-146, Method: Composition-based stats. Identities = 249/474 (52%), Positives = 329/474 (69%), Gaps = 5/474 (1%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M+ HLVW R DLR+ DN AL AAC NS A+V+A++IATP QW H +S RQ+ I A L Sbjct: 1 MTTHLVWFRQDLRLHDNLALAAACRNSSARVLALYIATPRQWAAHNMSPRQAELINAQLN 60 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 +Q +L++KGI + + +F S+E + C + VT LFYN QYE+NE RD +E+ Sbjct: 61 GLQIALAEKGIPLLFREVDDFAASVEIIKQVCAENSVTHLFYNYQYEVNERARDVEVERA 120 Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 L+ V+C+ FDDSV+LPPG+++ +MYKV+TPF+ A ++ L + + P +R +G Sbjct: 121 LR-NVVCEGFDDSVILPPGAVMTGNHEMYKVFTPFQNAWLKRLREGMPECVAAPKVRSSG 179 Query: 187 PVTPSNIPRFFDYPFQAIDP-MFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245 + P+ +YP Q+ D F + E+ A+ LR+FC+ Y +QRD PA +GTS+L Sbjct: 180 SIKPAPSITL-NYPRQSFDTAHFLVEEKAAIAQLRQFCQNGAGEYEQQRDFPAAEGTSRL 238 Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305 S L+ G LSPRQC +RL E L WL+ELIWREFYRHLM +YPS+C Sbjct: 239 SASLATGGLSPRQCLHRLLAEQPQALDGGAGSV--WLSELIWREFYRHLMTYYPSLCKHC 296 Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365 PFI WT++++W + LQAW++G TG+PI+DAAMRQLN+ GWMHNRLRMITASFLVKDL Sbjct: 297 PFIAWTDRVQWQSNPAHLQAWQEGKTGYPIVDAAMRQLNSTGWMHNRLRMITASFLVKDL 356 Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425 L+DWR GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG++FD +G FI Sbjct: 357 LIDWREGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGEKFDREGEFI 416 Query: 426 RHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479 R WLPEL +VP + +H P W +K + L+YP PIV+HK+A TL Y AA+K Sbjct: 417 RQWLPELRDVPGKVVHEPWKWAEKAGVKLDYPQPIVEHKEARVQTLAAYEAARK 470 >gi|24112014|ref|NP_706524.1| deoxyribodipyrimidine photolyase [Shigella flexneri 2a str. 301] gi|30062127|ref|NP_836298.1| deoxyribodipyrimidine photolyase [Shigella flexneri 2a str. 2457T] gi|24050832|gb|AAN42231.1| deoxyribodipyrimidine photolyase (photoreactivation) [Shigella flexneri 2a str. 301] gi|30040372|gb|AAP16104.1| deoxyribodipyrimidine photolyase (photoreactivation) [Shigella flexneri 2a str. 2457T] gi|281599976|gb|ADA72960.1| Deoxyribodipyrimidine photolyase [Shigella flexneri 2002017] gi|313649656|gb|EFS14080.1| deoxyribodipyrimidine photo-lyase [Shigella flexneri 2a str. 2457T] gi|332761188|gb|EGJ91474.1| deoxyribodipyrimidine photo-lyase [Shigella flexneri 2747-71] gi|332763978|gb|EGJ94216.1| deoxyribodipyrimidine photo-lyase [Shigella flexneri K-671] gi|332768197|gb|EGJ98382.1| deoxyribodipyrimidine photolyase [Shigella flexneri 2930-71] gi|333021492|gb|EGK40742.1| deoxyribodipyrimidine photo-lyase [Shigella flexneri K-304] Length = 472 Score = 524 bits (1350), Expect = e-146, Method: Composition-based stats. Identities = 248/474 (52%), Positives = 329/474 (69%), Gaps = 5/474 (1%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M+ HL W R DLR+ DN AL AAC NS A+V+A++IATP +W H +S RQ+ I A L Sbjct: 1 MTTHLAWFRQDLRLHDNLALAAACRNSSARVLALYIATPRKWETHNMSPRQAELINAQLN 60 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 +Q +L++KGI + + +F S+E + C + VT LFYN QYE+NE RD +E+ Sbjct: 61 GLQIALAEKGIPLLFREVDDFVASVEIVKQVCAENSVTHLFYNYQYEVNERARDVDVERA 120 Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 L+ V+C+ FDDSV+LPPG+++ +MYKV+TPF+ A ++ L + + P +R +G Sbjct: 121 LR-NVVCEGFDDSVILPPGAVMTGNHEMYKVFTPFKNAWLKRLREGMPECVAAPKVRSSG 179 Query: 187 PVTPSNIPRFFDYPFQAIDP-MFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245 + P+ +YP Q+ D FP+ E+ A+ LR+FC+ Y +QRD PA++GTS+L Sbjct: 180 SIKPAPSITL-NYPRQSFDTAHFPVEEKAAIAQLRQFCENGAGEYEQQRDFPAVEGTSRL 238 Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305 S L+ G LSPRQC +RL E L WL+ELIWREFYRHLM +YPS+C + Sbjct: 239 SASLATGGLSPRQCLHRLLAEQPQALDGGAGSV--WLSELIWREFYRHLMTYYPSLCKHR 296 Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365 PFI WT++++W + LQAW++G TG+PIIDAAMRQLN+ GWMHNRLRMITASFLVKDL Sbjct: 297 PFIAWTDRVQWQSNPAHLQAWQKGKTGYPIIDAAMRQLNSTGWMHNRLRMITASFLVKDL 356 Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425 L+DWR GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNP QG++FD +G FI Sbjct: 357 LIDWREGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPITQGEKFDREGEFI 416 Query: 426 RHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479 R WLPEL +VP + +H P W K + L+YP PIV+HK+A TL Y AA+K Sbjct: 417 RRWLPELRDVPGKAVHEPWKWAQKAGVKLDYPQPIVEHKEARVQTLAAYEAARK 470 >gi|238898396|ref|YP_002924077.1| deoxyribodipyrimidine photolyase (photoreactivation), FAD-binding [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] gi|229466155|gb|ACQ67929.1| deoxyribodipyrimidine photolyase (photoreactivation), FAD-binding [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] Length = 484 Score = 524 bits (1350), Expect = e-146, Method: Composition-based stats. Identities = 277/473 (58%), Positives = 343/473 (72%), Gaps = 2/473 (0%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M HLVWLR+DLR+TDN+AL AAC +S+AKV+AVFIATP QW+ H ++ RQ+ F+ A L Sbjct: 1 MPTHLVWLRHDLRVTDNRALNAACQHSEAKVLAVFIATPIQWKTHHMAPRQAAFLLAHLK 60 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 VQ L++ I YH+C +F D+++WL +C +V KLFYN QYEINE RRD LEK+ Sbjct: 61 AVQARLAELNIPLHYHECDDFQDAVKWLIDFCDHHKVDKLFYNHQYEINESRRDHALEKK 120 Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 L H+VIC+ F D+VLLPP +L QMY+V+TPFR+A ++ L +L +PVP R Sbjct: 121 LSHQVICQGFHDAVLLPPEKVLKENGQMYQVFTPFRRAFLKQLFLTNLSCIPVPKKRDGP 180 Query: 187 PVTPSNIPRFFDYPFQAIDP-MFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245 V+ S FDYP D +FPIGE A L +FC KV Y RD+ AI+GTS L Sbjct: 181 QVSISLTELSFDYPLLDFDTELFPIGEAAAQKQLTRFCDAKVSAYSHARDMLAIKGTSGL 240 Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305 SPYL++G+LSPRQC L+E F + + K GAF WLNELIWR+FYRHL+ YP + G Sbjct: 241 SPYLTLGILSPRQCLGCLREAFPEGIEDHK-GAFDWLNELIWRDFYRHLLIAYPRLSKGH 299 Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365 PFI WT ++W+ LL+ W+QG TG+PI+DAAMRQLNT GWMHNRLRMITASFLVKDL Sbjct: 300 PFIGWTTFVQWHHSDSLLEKWQQGQTGYPIVDAAMRQLNTTGWMHNRLRMITASFLVKDL 359 Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425 L+DWR+GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG+RFDP+G FI Sbjct: 360 LIDWRLGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGERFDPKGEFI 419 Query: 426 RHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478 RHWLPELN VP IH P SW +KN L+YP PIVDH++A TL+ + AK Sbjct: 420 RHWLPELNPVPESEIHQPWSWAEKNHKQLDYPTPIVDHQQARQATLSAFATAK 472 >gi|123443172|ref|YP_001007146.1| deoxyribodipyrimidine photolyase [Yersinia enterocolitica subsp. enterocolitica 8081] gi|122090133|emb|CAL12996.1| putative deoxyribodipyrimidine photolyase [Yersinia enterocolitica subsp. enterocolitica 8081] Length = 481 Score = 524 bits (1350), Expect = e-146, Method: Composition-based stats. Identities = 281/477 (58%), Positives = 338/477 (70%), Gaps = 2/477 (0%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M+ HLVW RNDLR+TDN AL+ AC + A VIAVFIATP QW H ++ RQ+ F+ +L Sbjct: 1 MATHLVWFRNDLRVTDNLALHTACQDPQATVIAVFIATPAQWAAHDMAPRQAAFLLQNLQ 60 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 +Q +L+ + I YHQC +F DSI WL +C QQ+V LFYN QYE+NE RD+ L + Sbjct: 61 LLQDALAARAIPLHYHQCDDFKDSITWLADFCQQQQVDALFYNHQYELNERMRDEALMTK 120 Query: 127 LQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185 L HR I C F DSVLLPPGS+L +MYKV+TPFR+A IQ L+ +D RS+P P R T Sbjct: 121 LSHRAIACHGFHDSVLLPPGSVLTGNNEMYKVFTPFRRAFIQRLMMSDCRSVPAPKTRTT 180 Query: 186 GPVTPSNIPRFFDYPFQAIDP-MFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244 V PS FDYP Q +D +FP GE+ AL LR FC+E V Y +QRD PA+ GTS Sbjct: 181 AAVIPSQPLAPFDYPQQPVDSQLFPAGEEAALQRLRSFCREDVQDYQQQRDFPAVAGTSC 240 Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304 LSPYL++G+LSPRQC NRL+ E +L GAF WLNELIWREFYRHL+ YP +C Sbjct: 241 LSPYLALGILSPRQCVNRLRAECPQVLENADGGAFIWLNELIWREFYRHLLVAYPRLCQH 300 Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364 PFI WT+ + WN L AW+QG TG+PI+DAAMRQLN GWMHNRLRMI+ASFLVKD Sbjct: 301 HPFIGWTDAVLWNHSKQQLIAWQQGRTGYPIVDAAMRQLNETGWMHNRLRMISASFLVKD 360 Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424 LL+DWR GE YFMSQLLDGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG+RFD G F Sbjct: 361 LLIDWRQGERYFMSQLLDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGERFDQDGVF 420 Query: 425 IRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481 IR WLPEL VP IH P W ++ SL+YP P+V+HK+A TL + AAK+ Sbjct: 421 IRRWLPELAAVPDSDIHQPWRWAERQQQSLDYPPPLVEHKQARLATLAAFEAAKRDG 477 >gi|293413984|ref|ZP_06656633.1| deoxyribodipyrimidine photo-lyase [Escherichia coli B185] gi|291434042|gb|EFF07015.1| deoxyribodipyrimidine photo-lyase [Escherichia coli B185] Length = 472 Score = 524 bits (1350), Expect = e-146, Method: Composition-based stats. Identities = 249/474 (52%), Positives = 332/474 (70%), Gaps = 5/474 (1%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M+ HLVW R DLR+ DN AL AAC NS A+V+A++IATP QW H +S RQ+ I A L Sbjct: 1 MTTHLVWFRQDLRLHDNLALAAACRNSSARVLALYIATPRQWAAHNMSPRQAELINAQLN 60 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 +Q +L++KGI + + +F S+E + C + VT LFYN QYE+NE RD +E+ Sbjct: 61 GLQIALAEKGIPLLFREVDDFVASVELVKQVCAENSVTHLFYNYQYEVNERARDVDVERA 120 Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 L+ V+C+ FDDSV+LPPG+++ +MYKV+TPF+ A ++ L + + P +R +G Sbjct: 121 LR-NVVCEGFDDSVILPPGAVMTGNHEMYKVFTPFKNAWLKRLREGMPECVAAPKVRSSG 179 Query: 187 PVTPSNIPRFFDYPFQAIDP-MFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245 + P+ +YP Q+ D FP+ E+ A+ LR+FC+ Y +QRD PA++GTS+L Sbjct: 180 SIKPAPSITL-NYPRQSFDTAHFPVEEKAAIAQLRQFCQNGAGEYEQQRDFPAVEGTSRL 238 Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305 S L+ G LSPRQC +RL E L WLNELIWREFYRHL+ ++PS+C + Sbjct: 239 SASLATGGLSPRQCLHRLLAEQPQALDGGAGSV--WLNELIWREFYRHLITYHPSLCKHR 296 Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365 PFI WT++++W + LQAW++G TG+PI+DAAMRQLN+ GWMHNRLRMITASFLVKDL Sbjct: 297 PFIAWTDRVQWQSNPAHLQAWQEGKTGYPIVDAAMRQLNSSGWMHNRLRMITASFLVKDL 356 Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425 L++WR GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG++FD +G FI Sbjct: 357 LINWREGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGEKFDREGEFI 416 Query: 426 RHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479 R WLPEL NVP + +H P W +K + L+YP PIV+HK+A TL Y AA+K Sbjct: 417 RQWLPELRNVPGKSVHEPWKWAEKAGVKLDYPQPIVEHKEARVQTLAAYEAARK 470 >gi|22125169|ref|NP_668592.1| deoxyribodipyrimidine photolyase [Yersinia pestis KIM 10] gi|45442282|ref|NP_993821.1| deoxyribodipyrimidine photolyase [Yersinia pestis biovar Microtus str. 91001] gi|108811346|ref|YP_647113.1| deoxyribodipyrimidine photolyase [Yersinia pestis Nepal516] gi|149365412|ref|ZP_01887447.1| putative deoxyribodipyrimidine photolyase [Yersinia pestis CA88-4125] gi|162421421|ref|YP_001607911.1| deoxyribodipyrimidine photolyase [Yersinia pestis Angola] gi|165925225|ref|ZP_02221057.1| deoxyribodipyrimidine photolyase [Yersinia pestis biovar Orientalis str. F1991016] gi|165937153|ref|ZP_02225718.1| deoxyribodipyrimidine photolyase [Yersinia pestis biovar Orientalis str. IP275] gi|166008496|ref|ZP_02229394.1| deoxyribodipyrimidine photolyase [Yersinia pestis biovar Antiqua str. E1979001] gi|166212293|ref|ZP_02238328.1| deoxyribodipyrimidine photolyase [Yersinia pestis biovar Antiqua str. B42003004] gi|167421168|ref|ZP_02312921.1| deoxyribodipyrimidine photolyase [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167423664|ref|ZP_02315417.1| deoxyribodipyrimidine photolyase [Yersinia pestis biovar Mediaevalis str. K1973002] gi|167468999|ref|ZP_02333703.1| deoxyribodipyrimidine photolyase [Yersinia pestis FV-1] gi|218929768|ref|YP_002347643.1| deoxyribodipyrimidine photolyase [Yersinia pestis CO92] gi|229838256|ref|ZP_04458415.1| deoxyribodipyrimidine photolyase, FAD-binding [Yersinia pestis biovar Orientalis str. PEXU2] gi|229895550|ref|ZP_04510721.1| deoxyribodipyrimidine photolyase, FAD-binding [Yersinia pestis Pestoides A] gi|229898820|ref|ZP_04513965.1| deoxyribodipyrimidine photolyase, FAD-binding [Yersinia pestis biovar Orientalis str. India 195] gi|229901594|ref|ZP_04516716.1| deoxyribodipyrimidine photolyase, FAD-binding [Yersinia pestis Nepal516] gi|270489781|ref|ZP_06206855.1| FAD binding domain of DNA photolyase [Yersinia pestis KIM D27] gi|294504486|ref|YP_003568548.1| putative deoxyribodipyrimidine photolyase [Yersinia pestis Z176003] gi|21958032|gb|AAM84843.1|AE013730_2 deoxyribodipyrimidine photolyase (photoreactivation) [Yersinia pestis KIM 10] gi|45437146|gb|AAS62698.1| putative deoxyribodipyrimidine photolyase [Yersinia pestis biovar Microtus str. 91001] gi|108774994|gb|ABG17513.1| Deoxyribodipyrimidine photo-lyase type I [Yersinia pestis Nepal516] gi|115348379|emb|CAL21314.1| putative deoxyribodipyrimidine photolyase [Yersinia pestis CO92] gi|149291825|gb|EDM41899.1| putative deoxyribodipyrimidine photolyase [Yersinia pestis CA88-4125] gi|162354236|gb|ABX88184.1| deoxyribodipyrimidine photolyase [Yersinia pestis Angola] gi|165915016|gb|EDR33628.1| deoxyribodipyrimidine photolyase [Yersinia pestis biovar Orientalis str. IP275] gi|165922832|gb|EDR39983.1| deoxyribodipyrimidine photolyase [Yersinia pestis biovar Orientalis str. F1991016] gi|165992878|gb|EDR45179.1| deoxyribodipyrimidine photolyase [Yersinia pestis biovar Antiqua str. E1979001] gi|166206224|gb|EDR50704.1| deoxyribodipyrimidine photolyase [Yersinia pestis biovar Antiqua str. B42003004] gi|166960657|gb|EDR56678.1| deoxyribodipyrimidine photolyase [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167057834|gb|EDR67580.1| deoxyribodipyrimidine photolyase [Yersinia pestis biovar Mediaevalis str. K1973002] gi|229681523|gb|EEO77617.1| deoxyribodipyrimidine photolyase, FAD-binding [Yersinia pestis Nepal516] gi|229688368|gb|EEO80439.1| deoxyribodipyrimidine photolyase, FAD-binding [Yersinia pestis biovar Orientalis str. India 195] gi|229694622|gb|EEO84669.1| deoxyribodipyrimidine photolyase, FAD-binding [Yersinia pestis biovar Orientalis str. PEXU2] gi|229701356|gb|EEO89384.1| deoxyribodipyrimidine photolyase, FAD-binding [Yersinia pestis Pestoides A] gi|262362522|gb|ACY59243.1| putative deoxyribodipyrimidine photolyase [Yersinia pestis D106004] gi|262366473|gb|ACY63030.1| putative deoxyribodipyrimidine photolyase [Yersinia pestis D182038] gi|270338285|gb|EFA49062.1| FAD binding domain of DNA photolyase [Yersinia pestis KIM D27] gi|294354945|gb|ADE65286.1| putative deoxyribodipyrimidine photolyase [Yersinia pestis Z176003] gi|320016095|gb|ADV99666.1| deoxyribodipyrimidine photolyase [Yersinia pestis biovar Medievalis str. Harbin 35] Length = 487 Score = 524 bits (1349), Expect = e-146, Method: Composition-based stats. Identities = 277/477 (58%), Positives = 345/477 (72%), Gaps = 4/477 (0%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 MS HLVW RNDLR+TDN AL+AAC + A VIAVFIATP QW HG++ RQ+ F+ +L Sbjct: 1 MSTHLVWFRNDLRVTDNLALHAACQDPQASVIAVFIATPVQWAAHGMAPRQAAFLRQNLQ 60 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 +Q +L+ +GI YHQC +F S WL +C QQ+V LFY++QYE+NE RD L + Sbjct: 61 HLQAALAARGIPLHYHQCDDFQASNTWLVDFCQQQQVDSLFYSQQYELNERLRDDALAVQ 120 Query: 127 LQHR-VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185 L R + C+SF DSVLL PG++L +MYKV+TPFR+A IQ L+ +D +P P R Sbjct: 121 LSERAITCQSFHDSVLLAPGTVLTGNNEMYKVFTPFRRAFIQRLLMSDNHCVPAPKARHA 180 Query: 186 GPVTPSNIPRFFDYPFQAIDP-MFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244 PV S +P FDYP Q++D +FP GE AL LR+FC+E+V Y + RD+PA+ GTS Sbjct: 181 PPVLLSPLP--FDYPQQSVDSQLFPAGEDAALQRLRRFCREQVQDYRQYRDLPAVPGTSC 238 Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304 LSPYL +GVLSPRQC+NRL E ++L SGAF+WLNELIWREFYRHL+ YP +C Sbjct: 239 LSPYLVLGVLSPRQCFNRLWAESPEMLENADSGAFTWLNELIWREFYRHLLVAYPRLCQH 298 Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364 PFI WT+ + WN+ L+AW+QG TG+PI+DAAMRQ+N GWMHNRLRMI+ASFLVKD Sbjct: 299 HPFIGWTDGLVWNRSESQLKAWQQGQTGYPIVDAAMRQMNETGWMHNRLRMISASFLVKD 358 Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424 LL+DWR GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG+RFD G F Sbjct: 359 LLIDWRQGERYFMSQLVDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGERFDKDGVF 418 Query: 425 IRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481 IR WLPEL VP IH P W ++ L+YP+P+VDHK+A TL + AAK+ S Sbjct: 419 IRRWLPELAAVPDSDIHQPWRWAERQQQHLDYPVPLVDHKQARLATLAAFEAAKRDS 475 >gi|237730671|ref|ZP_04561152.1| deoxyribodipyrimidine photolyase [Citrobacter sp. 30_2] gi|226906210|gb|EEH92128.1| deoxyribodipyrimidine photolyase [Citrobacter sp. 30_2] Length = 472 Score = 524 bits (1349), Expect = e-146, Method: Composition-based stats. Identities = 248/474 (52%), Positives = 327/474 (68%), Gaps = 4/474 (0%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M+ HLVW R DLR+ DN AL AAC + A V+A++I+TPEQW+ H ++ RQ+ + A L Sbjct: 1 MTTHLVWFRRDLRLHDNLALAAACRDRSAHVLALYISTPEQWKAHDMAPRQAALVNAQLN 60 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 +Q +L++KGI +H+ +F S+E + + C+Q V+++FYN QYEINE +RD +EK Sbjct: 61 ALQTALAEKGIPLLFHEVGDFATSVETVKNVCVQHGVSRMFYNYQYEINERQRDAAVEKS 120 Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 L V+C+ FDDSV+LP G+++ +MYKV+TPF+ A ++ + + P +R +G Sbjct: 121 LPQ-VVCEGFDDSVILPAGAVMTGNHEMYKVFTPFKNAWLKRIKDGIPECVSAPKVRESG 179 Query: 187 PVTPSNIPRFFDYPFQAIDPM-FPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245 + YP Q D FP E+ A+ LR FC++ Y + RD PAI GTS+L Sbjct: 180 ALDSPLTSITLSYPQQDFDSQQFPAEEKLAIAQLRHFCQQAAGEYEQLRDFPAIDGTSRL 239 Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305 S L+ G LSPRQC NRL E L WLNELIWREFYRHLM ++P++C + Sbjct: 240 SASLATGGLSPRQCLNRLLVEQPQALEDGAGSV--WLNELIWREFYRHLMTYHPALCRYQ 297 Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365 PFI WT++++W + LQAWK G TG+PI+DAAMRQLN GWMHNRLRMITASFLVKDL Sbjct: 298 PFIRWTDRVQWQNNPTHLQAWKTGNTGYPIVDAAMRQLNATGWMHNRLRMITASFLVKDL 357 Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425 L+DWR GE+YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG++FD G FI Sbjct: 358 LIDWRKGEQYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGEKFDRDGEFI 417 Query: 426 RHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479 R W+PEL +VP + IH P SW +K ++L+YP PIVDHK+A TL Y AA+K Sbjct: 418 RQWVPELRDVPGKAIHEPWSWAEKAQVTLSYPRPIVDHKQARLATLAAYEAARK 471 >gi|238786314|ref|ZP_04630253.1| Deoxyribodipyrimidine photo-lyase [Yersinia bercovieri ATCC 43970] gi|238712773|gb|EEQ04846.1| Deoxyribodipyrimidine photo-lyase [Yersinia bercovieri ATCC 43970] Length = 481 Score = 524 bits (1349), Expect = e-146, Method: Composition-based stats. Identities = 281/477 (58%), Positives = 346/477 (72%), Gaps = 2/477 (0%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M+ HLVWLRNDLR+TDN ALYAAC + A+VIAVFIATP+QW H ++ RQ+ F+ +L Sbjct: 1 MATHLVWLRNDLRVTDNLALYAACQDEHARVIAVFIATPKQWAAHDMAPRQAAFLRQNLQ 60 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 +Q +L+ +GI YHQC +F DSI WLD++C QQ+V LFYN+QYE+NE RRD+ + Sbjct: 61 LLQGALASRGIPLHYHQCDDFQDSIVWLDNFCQQQQVDALFYNQQYELNERRRDEAFTAQ 120 Query: 127 L-QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185 L + + C SF DSVLLPPGS+ +MYK++TPFR+A IQ L+ +D R +P P R Sbjct: 121 LNRQSIACHSFHDSVLLPPGSVQTGNHEMYKIFTPFRRAFIQRLMMSDCRCVPAPQARQN 180 Query: 186 GPVTPSNIPRFFDYP-FQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244 + FDYP A + +FP GE+ AL LR FC+E+V Y++QRD PAI GTS Sbjct: 181 SGAVELSPLEPFDYPQHSADNSLFPAGEEAALQRLRSFCREQVQDYLQQRDRPAIAGTSC 240 Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304 LSPYL++G++SPRQC+NRL+ E DLL + SGAF+WLNELIWREFYRHL+ YP +C Sbjct: 241 LSPYLALGIVSPRQCFNRLRAECPDLLERSDSGAFTWLNELIWREFYRHLLVAYPRLCQH 300 Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364 PFI WT+ + WN L AW+QG TG+PI+DAAMRQLN GWMHNRLRMI+ASFLVKD Sbjct: 301 HPFIGWTDAVRWNHSEQQLIAWQQGQTGYPIVDAAMRQLNETGWMHNRLRMISASFLVKD 360 Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424 LL+DWR GE YFMSQLLDGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG+RFD +GTF Sbjct: 361 LLIDWRHGERYFMSQLLDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGERFDKEGTF 420 Query: 425 IRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481 IR WLPEL VP IH P W + LNYP P+VDHK A TL + AAK+ Sbjct: 421 IRRWLPELAAVPDSDIHQPWRWAQRQQQHLNYPPPLVDHKLARLATLAAFDAAKRDG 477 >gi|283479118|emb|CAY75034.1| deoxyribodipyrimidine photolyase (photoreactivation) [Erwinia pyrifoliae DSM 12163] Length = 504 Score = 524 bits (1349), Expect = e-146, Method: Composition-based stats. Identities = 274/475 (57%), Positives = 347/475 (73%), Gaps = 5/475 (1%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M+ HLVWLRNDLRI DN ALYAAC + A VIA+FIATP QWR H ++ +Q+ FI+ SL Sbjct: 28 MTTHLVWLRNDLRINDNHALYAACRSEQANVIALFIATPGQWRTHLMAPKQAEFIWQSLQ 87 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 VQ+SL+ +GIV QC +F S+ L +C + RV +LFYN QYE+NE +RD +E+ Sbjct: 88 DVQQSLAARGIVLHVAQCDDFSASVTLLQEFCREHRVNRLFYNYQYEVNERQRDAAVERT 147 Query: 127 LQH-RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185 LQH V+ + FDDS+LLPPGS+L +MYKV+TPF KA ++ L Q LP PA+R Sbjct: 148 LQHDNVVVQGFDDSLLLPPGSVLTGNREMYKVFTPFSKAFVKRLQQGLPECLPAPAVRPG 207 Query: 186 GPVTP-SNIPRFFDYPFQAIDP-MFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS 243 G V + FDYP + ID +FP GE+ A+ LR+FC++ V Y ++R++PA GTS Sbjct: 208 GAVEARAGSLVAFDYPREDIDAGLFPSGEKAAIARLREFCQQAVADYPDKRNLPACDGTS 267 Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCM 303 +LS YL+ GVLSPRQC +RL ++ L + F WLNELIWREFYRHL+ +P++C Sbjct: 268 RLSVYLATGVLSPRQCLHRLLKQHPGALEDSR--VFVWLNELIWREFYRHLLVAFPALCR 325 Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363 +PF+ WT+ ++W DS L AW+QG TG+PI+DAAMRQLN++GWMHNRLRMITASFLVK Sbjct: 326 HQPFMRWTKSVKWRVDSQQLTAWQQGITGYPIVDAAMRQLNSLGWMHNRLRMITASFLVK 385 Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423 DLL+DWR GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG+RFD G Sbjct: 386 DLLIDWREGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGERFDKDGE 445 Query: 424 FIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478 FIRHWLPEL +VP +YIH PH W KN +L+YP P+VDHK A TL+ + AAK Sbjct: 446 FIRHWLPELRHVPPEYIHQPHQWARKNRQTLDYPQPLVDHKLARQQTLDAFEAAK 500 >gi|300715863|ref|YP_003740666.1| deoxyribodipyrimidine photo-lyase [Erwinia billingiae Eb661] gi|299061699|emb|CAX58815.1| Deoxyribodipyrimidine photo-lyase [Erwinia billingiae Eb661] Length = 475 Score = 524 bits (1349), Expect = e-146, Method: Composition-based stats. Identities = 267/477 (55%), Positives = 345/477 (72%), Gaps = 4/477 (0%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M+ HL+WLRNDLR+ DN AL+AAC ++DA V+A+FIATP QW+ H ++ +Q+ FIY +LL Sbjct: 1 MATHLIWLRNDLRVHDNYALHAACRDADATVLALFIATPAQWKSHSMAPKQAAFIYQNLL 60 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 VQ SL++KGI QC +F S+E L +C Q V +LFYN QYE+NE +RD E+R Sbjct: 61 DVQHSLAEKGIALHTVQCDDFAASVEALSDFCQQHHVDRLFYNYQYEVNERQRDAAAERR 120 Query: 127 L-QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185 L +I + FDDS+LLPPGS+L +MYKV+TPF +A ++ L + +P P R Sbjct: 121 LFDLDIISQGFDDSLLLPPGSVLTGNREMYKVFTPFSRAFVKRLHEGLPECVPAPKPRQG 180 Query: 186 GPVTPSNIPRFFDYPFQAIDP-MFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244 P++ + + FDYP +A D +F GE+ ALH LR FC++ V Y + R+IPA+ GTS+ Sbjct: 181 APLSKTPEIKPFDYPTEAFDSELFAAGEKAALHQLRHFCQQPVTEYPDTRNIPAVDGTSR 240 Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304 LS YL+ GVLSPRQC +RL E L S F WLNELIWREFYRHL+ +P +C Sbjct: 241 LSVYLATGVLSPRQCLHRLLAEHPRGL--DDSNVFVWLNELIWREFYRHLLVAWPKLCRY 298 Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364 KPFI WT+ ++W L+AW+QG TG+PI+DAAMRQ+N +GWMHNRLRMI ASFLVKD Sbjct: 299 KPFIAWTDNVKWQPADKQLEAWQQGKTGYPIVDAAMRQMNQLGWMHNRLRMIVASFLVKD 358 Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424 LL+DWR GE YFMSQL+DGDLA+NNGGWQWAAS+GND+ PYFRIFNPT QG+RFD +G F Sbjct: 359 LLIDWREGERYFMSQLIDGDLAANNGGWQWAASSGNDAAPYFRIFNPTTQGERFDKEGEF 418 Query: 425 IRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481 IR WLPEL +VP ++IH PH W D ++L+YP P+VDHK+A TL + AA+KQS Sbjct: 419 IRKWLPELKDVPVKHIHQPHIWADNVGVALDYPQPVVDHKEARKRTLEAFEAARKQS 475 >gi|186896329|ref|YP_001873441.1| deoxyribodipyrimidine photolyase [Yersinia pseudotuberculosis PB1/+] gi|186699355|gb|ACC89984.1| DNA photolyase FAD-binding [Yersinia pseudotuberculosis PB1/+] Length = 487 Score = 523 bits (1348), Expect = e-146, Method: Composition-based stats. Identities = 277/477 (58%), Positives = 345/477 (72%), Gaps = 4/477 (0%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 MS HLVW RNDLR+TDN AL+AAC + A VIAVFIATP QW HG++ RQ+ F+ +L Sbjct: 1 MSTHLVWFRNDLRVTDNLALHAACQDPQASVIAVFIATPVQWAAHGMAPRQAAFLRQNLQ 60 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 +Q +L+ +GI YHQC +F S WL +C QQ+V LFY++QYE+NE RD L + Sbjct: 61 HLQAALAARGIPLHYHQCDDFQASNTWLVDFCQQQQVDSLFYSQQYELNERLRDDALAVQ 120 Query: 127 LQHR-VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185 L R + C+SF DSVLL PG++L +MYKV+TPFR+A IQ L+ +D +P P R Sbjct: 121 LSGRAITCQSFHDSVLLAPGTVLTGNNEMYKVFTPFRRAFIQRLLMSDNHCVPAPKTRHA 180 Query: 186 GPVTPSNIPRFFDYPFQAIDP-MFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244 PV S +P FDYP Q++D +FP GE AL LR+FC+E+V Y + RD+PA+ GTS Sbjct: 181 PPVLLSPLP--FDYPQQSVDSQLFPAGEDAALQRLRRFCREQVQDYRQYRDLPAVPGTSC 238 Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304 LSPYL +GVLSPRQC+NRL E ++L SGAF+WLNELIWREFYRHL+ YP +C Sbjct: 239 LSPYLVLGVLSPRQCFNRLWAESPEMLESADSGAFTWLNELIWREFYRHLLVAYPRLCQH 298 Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364 PFI WT+ + WN+ L+AW+QG TG+PI+DAAMRQ+N GWMHNRLRMI+ASFLVKD Sbjct: 299 HPFIGWTDGLVWNRSESQLKAWQQGQTGYPIVDAAMRQMNETGWMHNRLRMISASFLVKD 358 Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424 LL+DWR GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG+RFD G F Sbjct: 359 LLIDWRQGERYFMSQLVDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGERFDKDGVF 418 Query: 425 IRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481 IR WLPEL VP IH P W ++ L+YP+P+VDHK+A TL + AAK+ S Sbjct: 419 IRRWLPELAAVPDSDIHQPWRWAERQQQHLDYPVPLVDHKQARLATLAAFEAAKRDS 475 >gi|91209744|ref|YP_539730.1| deoxyribodipyrimidine photolyase [Escherichia coli UTI89] gi|91071318|gb|ABE06199.1| deoxyribodipyrimidine photolyase [Escherichia coli UTI89] Length = 472 Score = 523 bits (1348), Expect = e-146, Method: Composition-based stats. Identities = 249/476 (52%), Positives = 331/476 (69%), Gaps = 5/476 (1%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M+ HLVW R DLR DN AL AAC NS A+V+A++IATP QW H +S RQ+ I L Sbjct: 1 MTTHLVWFRQDLRQHDNLALAAACRNSSARVLALYIATPRQWAAHNVSPRQAELINTQLN 60 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 +Q +L++KGI + + +F S+E + C + R+T LFYN QYE+NE RD E+ Sbjct: 61 ALQNALAEKGIPLLFREVDDFAASVETVKQMCAENRITHLFYNYQYEVNERARDVQAERT 120 Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 L+ V+C+ FDDSV+LPPG+++ +MYKV+TPF+ A ++ L + + P R +G Sbjct: 121 LR-NVVCEGFDDSVILPPGAVMTGNHEMYKVFTPFKNAWLKRLREGMPECVAAPKFRSSG 179 Query: 187 PVTPSNIPRFFDYPFQAIDP-MFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245 + P+ +YP Q+ D FP+ E+ A+ LR+FC+ Y +QRD PA++GTS+L Sbjct: 180 SIEPAPSITL-NYPRQSFDTAHFPVEEKAAIAQLRQFCQNGAGEYEQQRDFPAVEGTSRL 238 Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305 S L+ G LSPRQC +RL E +L WLNELIWREFYRHLM +YPS+C + Sbjct: 239 SASLATGGLSPRQCLHRLLAEQPQVLEGGPGSV--WLNELIWREFYRHLMTYYPSLCKHR 296 Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365 PFI WT++++W + L+AW++G TG+PI+DAAMRQLN+ GWMHNRLRMITASFLVKDL Sbjct: 297 PFIAWTDRVQWQSNPAHLKAWQEGKTGYPIVDAAMRQLNSTGWMHNRLRMITASFLVKDL 356 Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425 L+DWR GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG++FD +G FI Sbjct: 357 LIDWREGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGEKFDREGEFI 416 Query: 426 RHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481 R WLPEL +VP + +H P W +K ++L+YP PIVDHK+A TL Y A+K + Sbjct: 417 RQWLPELRDVPGKAVHEPWKWAEKTGVTLDYPQPIVDHKEARLRTLAAYEEARKGA 472 >gi|315299251|gb|EFU58505.1| FAD binding domain of DNA photolyase [Escherichia coli MS 16-3] Length = 472 Score = 523 bits (1348), Expect = e-146, Method: Composition-based stats. Identities = 248/476 (52%), Positives = 331/476 (69%), Gaps = 5/476 (1%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M+ HLVW R DLR DN AL AAC NS A+V+A++IATP QW H +S RQ+ I L Sbjct: 1 MTTHLVWFRQDLRQHDNLALAAACRNSSARVLALYIATPRQWAAHNVSPRQAELINTQLN 60 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 +Q +L++KGI + + +F S+E + C + R+T LFYN QYE+NE RD E+ Sbjct: 61 ALQNALAEKGIPLLFREVDDFAASVETVKQVCAENRITHLFYNYQYEVNERARDVQAERT 120 Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 L+ V+C+ FDDSV+LPPG+++ +MYKV+T F+ A ++ L + + P +R +G Sbjct: 121 LR-NVVCEGFDDSVILPPGAVMTGNHEMYKVFTSFKNAWLKRLREGMPECVAAPKVRSSG 179 Query: 187 PVTPSNIPRFFDYPFQAIDP-MFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245 + P+ +YP Q+ D FP+ E+ A+ LR+FC+ Y +QRD PA++GTS+L Sbjct: 180 SIEPAPSITL-NYPRQSFDTAHFPVEEKAAIAQLRQFCQNGAGEYEQQRDFPAVEGTSRL 238 Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305 S L+ G LSPRQC +RL E +L WLNELIWREFYRHLM +YPS+C + Sbjct: 239 SASLATGGLSPRQCLHRLLAEQPQVLEGGPGSV--WLNELIWREFYRHLMTYYPSLCKHR 296 Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365 PFI WT++++W + L+AW++G TG+PI+DAAMRQLN+ GWMHNRLRMITASFLVKDL Sbjct: 297 PFIAWTDRVQWQSNPAHLKAWQEGKTGYPIVDAAMRQLNSTGWMHNRLRMITASFLVKDL 356 Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425 L+DWR GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG++FD +G FI Sbjct: 357 LIDWREGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGEKFDREGEFI 416 Query: 426 RHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481 R WLPEL +VP + +H P W +K ++L+YP PIVDHK+A TL Y A+K + Sbjct: 417 RQWLPELRDVPGKAVHEPWKWAEKTGVTLDYPQPIVDHKEARLRTLAAYEEARKGA 472 >gi|170023409|ref|YP_001719914.1| deoxyribodipyrimidine photolyase [Yersinia pseudotuberculosis YPIII] gi|169749943|gb|ACA67461.1| Deoxyribodipyrimidine photo-lyase [Yersinia pseudotuberculosis YPIII] Length = 487 Score = 523 bits (1348), Expect = e-146, Method: Composition-based stats. Identities = 277/477 (58%), Positives = 345/477 (72%), Gaps = 4/477 (0%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 MS HLVW RNDLR+TDN AL+AAC + A VIAVFIATP QW HG++ RQ+ F+ +L Sbjct: 1 MSTHLVWFRNDLRVTDNLALHAACQDPQASVIAVFIATPVQWATHGMAPRQAAFLRQNLQ 60 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 +Q +L+ +GI YHQC +F S WL +C QQ+V LFY++QYE+NE RD L + Sbjct: 61 HLQAALAARGIPLHYHQCDDFQASNTWLVDFCQQQQVDSLFYSQQYELNERLRDDALAVQ 120 Query: 127 LQHR-VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185 L R + C+SF DSVLL PG++L +MYKV+TPFR+A IQ L+ +D +P P R Sbjct: 121 LSGRAITCQSFHDSVLLAPGTVLTGNNEMYKVFTPFRRAFIQRLLMSDNHCVPAPKARHA 180 Query: 186 GPVTPSNIPRFFDYPFQAIDP-MFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244 PV S +P FDYP Q++D +FP GE AL LR+FC+E+V Y + RD+PA+ GTS Sbjct: 181 PPVLLSPLP--FDYPQQSVDSQLFPAGEDAALQRLRRFCREQVQDYRQYRDLPAVPGTSC 238 Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304 LSPYL +GVLSPRQC+NRL E ++L SGAF+WLNELIWREFYRHL+ YP +C Sbjct: 239 LSPYLVLGVLSPRQCFNRLWAESPEMLENADSGAFTWLNELIWREFYRHLLVAYPRLCQH 298 Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364 PFI WT+ + WN+ L+AW+QG TG+PI+DAAMRQ+N GWMHNRLRMI+ASFLVKD Sbjct: 299 HPFIGWTDGLVWNRSESQLKAWQQGQTGYPIVDAAMRQMNETGWMHNRLRMISASFLVKD 358 Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424 LL+DWR GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG+RFD G F Sbjct: 359 LLIDWRQGERYFMSQLVDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGERFDKDGVF 418 Query: 425 IRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481 IR WLPEL VP IH P W ++ L+YP+P+VDHK+A TL + AAK+ S Sbjct: 419 IRRWLPELAAVPDSDIHQPWRWAERQQQHLDYPVPLVDHKQARLATLAAFEAAKRDS 475 >gi|324114816|gb|EGC08784.1| DNA photolyase [Escherichia fergusonii B253] Length = 472 Score = 523 bits (1348), Expect = e-146, Method: Composition-based stats. Identities = 248/476 (52%), Positives = 331/476 (69%), Gaps = 5/476 (1%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M+ HLVW R DLR+ DN AL AAC NS A+V+A++IATP QW H +S RQ+ I A L Sbjct: 1 MTTHLVWFRQDLRLHDNLALAAACRNSSARVLALYIATPRQWAAHNMSPRQAELINAQLN 60 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 ++ +L++KGI + + +F S+E + C + RVT LFYN QYE+NE RD +E+ Sbjct: 61 GLRIALAEKGIPLLFREVDDFVASVEIVKQVCAENRVTHLFYNYQYEVNERARDVEVERA 120 Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 + V+C+ FDDSV+LPPG+++ +MYKV+TPF+ A ++ L + + P +R +G Sbjct: 121 -RRNVVCEGFDDSVILPPGAVMTGNHEMYKVFTPFKNAWLKRLREGMPECVAAPKVRSSG 179 Query: 187 PVTPSNIPRFFDYPFQAIDP-MFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245 + P+ +YP Q+ D FP+ E+ + LR+FC+ Y +QRD PA++GTS+L Sbjct: 180 SLDPAPSITL-NYPRQSFDTAHFPVEEKAVIAQLRQFCQSGAGEYEQQRDFPAVEGTSRL 238 Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305 S L+ G LSPRQC +RL E L WLNELIWREFYRHLM ++PS+C + Sbjct: 239 SASLATGRLSPRQCLHRLLAEQPQALDGGAGSV--WLNELIWREFYRHLMTYHPSLCKHR 296 Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365 PFI WT++++W + L+AW++G TG+PI+DAAMRQLN+ GWMHNRLRMITASFLVKDL Sbjct: 297 PFIAWTDRVQWQSNPAHLKAWQEGKTGYPIVDAAMRQLNSTGWMHNRLRMITASFLVKDL 356 Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425 L+DWR GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG++FD +G FI Sbjct: 357 LIDWREGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGEKFDHEGEFI 416 Query: 426 RHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481 R WLPEL +VP + +H P W K ++L+YP PIVDHK+A TL Y AKK + Sbjct: 417 RQWLPELRDVPGKAVHEPWKWAQKAGVTLDYPQPIVDHKEARLRTLAVYEEAKKGA 472 >gi|51597229|ref|YP_071420.1| deoxyribodipyrimidine photolyase [Yersinia pseudotuberculosis IP 32953] gi|51590511|emb|CAH22151.1| putative deoxyribodipyrimidine photolyase [Yersinia pseudotuberculosis IP 32953] Length = 487 Score = 523 bits (1347), Expect = e-146, Method: Composition-based stats. Identities = 277/477 (58%), Positives = 345/477 (72%), Gaps = 4/477 (0%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 MS HLVW RNDLR+TDN AL+AAC + A VIAVFIATP QW HG++ RQ+ F+ +L Sbjct: 1 MSTHLVWFRNDLRVTDNLALHAACQDPQASVIAVFIATPVQWAAHGMAPRQAAFLRQNLQ 60 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 +Q +L+ +GI YHQC +F S WL +C QQ+V LFY++QYE+NE RD L + Sbjct: 61 HLQAALAARGIPLHYHQCDDFQASNTWLVDFCQQQQVDSLFYSQQYELNERLRDDALAVQ 120 Query: 127 LQHR-VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185 L R + C+SF DSVLL PG++L +MYKV+TPFR+A IQ L+ +D +P P R Sbjct: 121 LSGRAITCQSFHDSVLLAPGTVLTGNNEMYKVFTPFRRAFIQRLLMSDNHCVPAPKARHA 180 Query: 186 GPVTPSNIPRFFDYPFQAIDP-MFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244 PV S +P FDYP Q++D +FP GE AL LR+FC+E+V Y + RD+PA+ GTS Sbjct: 181 PPVLLSPLP--FDYPQQSVDSQLFPAGEDAALQRLRRFCREQVQDYRQYRDLPAVPGTSC 238 Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304 LSPYL +GVLSPRQC+NRL E ++L SGAF+WLNELIWREFYRHL+ YP +C Sbjct: 239 LSPYLVLGVLSPRQCFNRLWAESPEMLENADSGAFTWLNELIWREFYRHLLVAYPRLCQH 298 Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364 PFI WT+ + WN+ L+AW+QG TG+PI+DAAMRQ+N GWMHNRLRMI+ASFLVKD Sbjct: 299 HPFIGWTDGLVWNRSESQLKAWQQGQTGYPIVDAAMRQMNETGWMHNRLRMISASFLVKD 358 Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424 LL+DWR GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG+RFD G F Sbjct: 359 LLIDWRQGERYFMSQLVDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGERFDKDGVF 418 Query: 425 IRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481 IR WLPEL VP IH P W ++ L+YP+P+VDHK+A TL + AAK+ S Sbjct: 419 IRRWLPELAAVPDSDIHQPWRWAERQQQHLDYPVPLVDHKQARLATLAAFEAAKRDS 475 >gi|167552876|ref|ZP_02346627.1| deoxyribodipyrimidine photo-lyase [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|205322586|gb|EDZ10425.1| deoxyribodipyrimidine photo-lyase [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] Length = 473 Score = 523 bits (1346), Expect = e-146, Method: Composition-based stats. Identities = 251/476 (52%), Positives = 334/476 (70%), Gaps = 4/476 (0%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M HLVW R DLR+ DN AL AAC ++ A+V+A++I+TP QW+ H ++ RQ+ FI A L Sbjct: 1 MPTHLVWFRRDLRLQDNLALAAACRDASARVLALYISTPAQWQAHDMAPRQAAFISAQLN 60 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 +Q +L++KGI +H+ ++F+ SIE + + C Q V+ LFYN QYE NE +RD +EK Sbjct: 61 ALQTALAEKGIPLLFHEVADFNASIETVKNVCRQHDVSHLFYNYQYEFNERQRDAAVEKT 120 Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 L VIC+ FDDSV+L PG+++ +MYKV+TPF+ A ++ L + +P P IR++G Sbjct: 121 LPS-VICEGFDDSVILAPGAVMTGNHEMYKVFTPFKNAWLKRLKEDIPPCVPAPKIRVSG 179 Query: 187 PVTPSNIPRFFDYPFQAIDP-MFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245 ++ P +YP QA D +FP+ E + LR+FC + Y +RD PA+ GTS+L Sbjct: 180 ALSTPLTPVSLNYPQQAFDAALFPVEENAVIAQLRQFCAQGADGYESRRDFPAVDGTSRL 239 Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305 S L+ G LSPRQC +RL E L WLNELIWREFYRHLM +YP++C + Sbjct: 240 SASLATGGLSPRQCLHRLLAEQPQALDGGPGSV--WLNELIWREFYRHLMTWYPALCKHQ 297 Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365 PFI WT+++ W ++ H QAW++G TG+PI+DAAMRQLN GWMHNRLRMITASFLVKDL Sbjct: 298 PFIRWTKRVAWQENPHYFQAWQKGETGYPIVDAAMRQLNATGWMHNRLRMITASFLVKDL 357 Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425 L+DWR+GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG+RFD G FI Sbjct: 358 LIDWRLGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGERFDRDGEFI 417 Query: 426 RHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481 R WLP L ++P + IH P W +K + L+YP PIV+HK+A TL+ Y AA+K + Sbjct: 418 RQWLPALRDIPGKAIHEPWRWAEKAGVVLDYPRPIVEHKQARIATLSAYEAARKGA 473 >gi|188534445|ref|YP_001908242.1| deoxyribodipyrimidine photolyase [Erwinia tasmaniensis Et1/99] gi|188029487|emb|CAO97364.1| Deoxyribodipyrimidine photo-lyase [Erwinia tasmaniensis Et1/99] Length = 477 Score = 523 bits (1346), Expect = e-146, Method: Composition-based stats. Identities = 273/477 (57%), Positives = 349/477 (73%), Gaps = 5/477 (1%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M+ HLVWLRNDLRI DN ALYAAC + AKVIA+FIATPEQWR H ++ +Q+ FI+ SL Sbjct: 1 MTTHLVWLRNDLRINDNHALYAACRSQQAKVIALFIATPEQWRAHHMAPKQAEFIWQSLQ 60 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 VQ+SL+ KGI QC +FD S+ L ++C + RV +LFYN QYE+NE +RD +E+ Sbjct: 61 DVQQSLAAKGIALHVAQCDDFDASVPLLQAFCREHRVDRLFYNYQYEVNERQRDAAMEQA 120 Query: 127 L-QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185 L + V+ + FDDS+LLPPGS+L +MYKV+TPF KA ++ L Q LP P +R Sbjct: 121 LFEDDVVAQGFDDSLLLPPGSVLTGNREMYKVFTPFSKAFVKRLQQGLPECLPAPDVRQG 180 Query: 186 GPVTP-SNIPRFFDYPFQAIDP-MFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS 243 G + ++ F+YP + IDP +FP GE+ A+ LR+FC++ V Y ++RD+PA GTS Sbjct: 181 GAIEAGADPLEPFNYPREDIDPSLFPSGEKAAIARLREFCQQAVTDYPDKRDLPASDGTS 240 Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCM 303 +LS YL+ GVLSPRQC +RL ++ L + F WLNELIWREFYRHL+ +P++C Sbjct: 241 RLSVYLATGVLSPRQCLHRLLKQHSGALEDAR--VFVWLNELIWREFYRHLLVAFPALCR 298 Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363 +PF WT ++W + L AW+QG TG+PI+DAAMRQLN++GWMHNRLRMITASFLVK Sbjct: 299 HQPFTRWTRNVKWREAPQHLTAWQQGKTGYPIVDAAMRQLNSLGWMHNRLRMITASFLVK 358 Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423 DLLVDWR GE YFMSQLLDGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG+RFD G Sbjct: 359 DLLVDWREGERYFMSQLLDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGERFDKDGE 418 Query: 424 FIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQ 480 FIR WLPEL +VP +YIH PH W KN +L+YP P+VDHK+A TL+ + AA+K+ Sbjct: 419 FIRRWLPELRDVPAEYIHQPHQWARKNQQTLDYPQPLVDHKQARQQTLDAFEAARKK 475 >gi|168238850|ref|ZP_02663908.1| deoxyribodipyrimidine photo-lyase (DNA photolyase) [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|194736598|ref|YP_002113816.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|194712100|gb|ACF91321.1| deoxyribodipyrimidine photo-lyase [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|197288345|gb|EDY27726.1| deoxyribodipyrimidine photo-lyase (DNA photolyase) [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] Length = 473 Score = 523 bits (1346), Expect = e-146, Method: Composition-based stats. Identities = 252/476 (52%), Positives = 334/476 (70%), Gaps = 4/476 (0%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M HLVW R DLR+ DN AL AAC ++ A+V+A++I+TP QW+ H ++ RQ+ FI A L Sbjct: 1 MPTHLVWFRRDLRLQDNLALAAACRDASARVLALYISTPAQWQAHDMAPRQAAFISAQLN 60 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 +Q +L++KGI +H+ ++F+ SIE + + C Q V+ LFYN QYE NE +RD +EK Sbjct: 61 ALQTALAEKGIPLLFHEVADFNASIETVKNVCRQHDVSHLFYNYQYEFNERQRDAAVEKT 120 Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 L VIC+ FDDSV+L PG+++ +MYKV+TPF+ A ++ L + +P P IR++G Sbjct: 121 LPS-VICEGFDDSVILAPGAVMTGNHEMYKVFTPFKNAWLKRLKEDIPPCVPAPKIRVSG 179 Query: 187 PVTPSNIPRFFDYPFQAIDP-MFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245 ++ P +YP QA D +FP+ E + LR+FC + Y QRD PA+ GTS+L Sbjct: 180 ALSTPLTPVSLNYPQQAFDAALFPVEENAVIAQLRQFCAQGADEYESQRDFPAVDGTSRL 239 Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305 S L+ G LSPRQC +RL E L WLNELIWREFYRHLM +YP++C + Sbjct: 240 SASLATGGLSPRQCLHRLLAEQPQALDGGPGSV--WLNELIWREFYRHLMTWYPALCKHQ 297 Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365 PFI WT+++ W ++ H QAW++G TG+PI+DAAMRQLN GWMHNRLRMITASFLVKDL Sbjct: 298 PFIRWTKRVAWQENPHYFQAWQKGETGYPIVDAAMRQLNATGWMHNRLRMITASFLVKDL 357 Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425 L+DWR+GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG+RFD G FI Sbjct: 358 LIDWRLGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGERFDRDGEFI 417 Query: 426 RHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481 R WLP L ++P + IH P W +K + L+YP PIV+HK+A TL+ Y AA+K + Sbjct: 418 RQWLPALRDIPGKAIHEPWRWAEKAGVVLDYPRPIVEHKQARIATLSAYEAARKGA 473 >gi|215485731|ref|YP_002328162.1| deoxyribodipyrimidine photolyase [Escherichia coli O127:H6 str. E2348/69] gi|312965140|ref|ZP_07779377.1| deoxyribodipyrimidine photo-lyase [Escherichia coli 2362-75] gi|215263803|emb|CAS08139.1| deoxyribodipyrimidine photolyase, FAD-binding [Escherichia coli O127:H6 str. E2348/69] gi|312290231|gb|EFR18114.1| deoxyribodipyrimidine photo-lyase [Escherichia coli 2362-75] Length = 472 Score = 523 bits (1346), Expect = e-146, Method: Composition-based stats. Identities = 249/476 (52%), Positives = 329/476 (69%), Gaps = 5/476 (1%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M+ HLVW R DLR DN AL AAC NS A+V+A++IATP QW H +S RQ+ I L Sbjct: 1 MTTHLVWFRQDLRQHDNLALAAACRNSSARVLALYIATPRQWAVHNVSPRQAELINTQLN 60 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 +Q +L++KGI + + +F S+E + C + RVT LFYN QYE+NE RD E+ Sbjct: 61 ALQNALAEKGIPLLFREVDDFAASVEIVKQVCAENRVTHLFYNYQYEVNERARDVQAERA 120 Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 L+ V+C+ FDD V+LPPG+++ +MYKV+TPF+ A ++ L + + P +R +G Sbjct: 121 LR-NVVCEGFDDGVILPPGAVMTGNHEMYKVFTPFKNAWLKRLREGMPECVAAPKVRSSG 179 Query: 187 PVTPSNIPRFFDYPFQAIDP-MFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245 + P+ +YP Q D FP+ E+ A+ LR+FC+ Y +QRD PA++GTS+L Sbjct: 180 SIDPAPSITL-NYPRQPFDTAHFPVEEKAAIAQLRQFCQNGAGEYEQQRDFPAVEGTSRL 238 Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305 S L+ G LSPRQC +RL E L WLNELIWREFYRHL+ +YPS+C + Sbjct: 239 SASLATGGLSPRQCLHRLLAEQPQALDGGAGSI--WLNELIWREFYRHLITYYPSLCKHR 296 Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365 PFI WT++++W +S L+AW++G TG+PI+DAAMRQLN+ GWMHNRLRMITASFLVKDL Sbjct: 297 PFIVWTDRVQWQSNSAHLKAWQEGKTGYPIVDAAMRQLNSTGWMHNRLRMITASFLVKDL 356 Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425 L+DWR GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG++FD +G FI Sbjct: 357 LIDWREGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGEKFDREGEFI 416 Query: 426 RHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481 R WLPEL +VP + +H P W K ++L+YP PIVDHK+A TL Y A+K + Sbjct: 417 RQWLPELRDVPGKVVHEPWKWAQKAGVTLDYPQPIVDHKEARLRTLAAYEEARKGA 472 >gi|218549732|ref|YP_002383523.1| deoxyribodipyrimidine photolyase [Escherichia fergusonii ATCC 35469] gi|218357273|emb|CAQ89908.1| deoxyribodipyrimidine photolyase, FAD-binding [Escherichia fergusonii ATCC 35469] Length = 472 Score = 522 bits (1345), Expect = e-146, Method: Composition-based stats. Identities = 250/476 (52%), Positives = 331/476 (69%), Gaps = 5/476 (1%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M+ HLVW R DLR+ DN AL AAC NS A+V+A+ IATP QW H +S RQ+ I A L Sbjct: 1 MTTHLVWFRQDLRLHDNLALAAACRNSSARVLALNIATPRQWAAHNMSPRQAELINAQLN 60 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 ++ +L++KGI + + +F S+E + C + RVT LFYN QYE+NE RD +E+ Sbjct: 61 GLRIALAEKGIPLLFREVDDFVASVEIVKQVCAENRVTHLFYNYQYEVNERARDVEVERA 120 Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 L+ V+C+ FDDSV+LPPG+++ +MYKV+TPF+ A ++ L + + P +R +G Sbjct: 121 LR-NVVCEGFDDSVILPPGAVMTGNHEMYKVFTPFKNAWLKRLREGMPECVAAPKVRSSG 179 Query: 187 PVTPSNIPRFFDYPFQAIDP-MFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245 + + +YP Q+ D FP+ E+ A+ LR+FC+ Y +QRD PA++GTS+L Sbjct: 180 SIETAPSITL-NYPRQSFDTAHFPVEEKAAIAQLRQFCQNGAGEYEQQRDFPAVEGTSRL 238 Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305 S L+ G LSPRQC +RL E L WLNELIWREFYRHLM +YPS+C + Sbjct: 239 SASLATGRLSPRQCLHRLLAEQPQALDGGAGSV--WLNELIWREFYRHLMTYYPSLCKHR 296 Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365 PFI WT++++W + L+AW++G TG+PI+DAAMRQLN+ GWMHNRLRMITASFLVKDL Sbjct: 297 PFIAWTDRVQWQSNPAHLKAWQEGKTGYPIVDAAMRQLNSSGWMHNRLRMITASFLVKDL 356 Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425 L+DWR GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG++FD +G FI Sbjct: 357 LIDWREGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGEKFDHEGEFI 416 Query: 426 RHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481 R WLPEL +VP + +H P W K ++L+YP PIVDHK+A TL Y AKK + Sbjct: 417 RQWLPELRDVPGKAVHEPWKWAQKAGVTLDYPQPIVDHKEARLRTLAAYEEAKKGA 472 >gi|238797755|ref|ZP_04641249.1| Deoxyribodipyrimidine photo-lyase [Yersinia mollaretii ATCC 43969] gi|238718396|gb|EEQ10218.1| Deoxyribodipyrimidine photo-lyase [Yersinia mollaretii ATCC 43969] Length = 481 Score = 522 bits (1345), Expect = e-146, Method: Composition-based stats. Identities = 281/477 (58%), Positives = 349/477 (73%), Gaps = 2/477 (0%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M+ HLVW R+DLRITDN AL+AAC + AKV+AVFIATP+QW H ++ RQ+ F+ +L Sbjct: 1 MATHLVWFRHDLRITDNLALHAACQDEQAKVMAVFIATPKQWAAHDMAPRQAAFLRQNLH 60 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 +Q +L+ +GI YHQC++F DSI WL +C QQ+V LFYN+QYE+NE+RRD+ + Sbjct: 61 LLQAALADRGIPLHYHQCADFQDSILWLADFCQQQQVDALFYNQQYELNEMRRDEAFTVQ 120 Query: 127 LQHR-VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185 L R + C SF DSVLLPPGS+ +MYK++TPFR+A IQ L+ +D RS+P P R Sbjct: 121 LNRRSIACHSFHDSVLLPPGSVQTGNNEMYKIFTPFRRAFIQRLMMSDCRSVPAPKARQN 180 Query: 186 GPVTPSNIPRFFDYPFQAIDP-MFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244 FDYP Q++D +FP GE+ AL LR FC+E+V Y++QRD+PA+ GTS Sbjct: 181 AGAITLTPLEPFDYPQQSVDSQLFPAGEEAALQRLRSFCREQVQDYLQQRDLPAVAGTSG 240 Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304 LSPYL++G+LSPRQC+NRL+ E DLL SGAF+WLNELIWREFYRHL+ YP +C Sbjct: 241 LSPYLALGILSPRQCFNRLRAECPDLLESSDSGAFTWLNELIWREFYRHLLVAYPRLCQH 300 Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364 PF+ WT+ + WN L AW+QG TG+PI+DAAMRQLN GWMHNRLRMITASFLVKD Sbjct: 301 HPFMGWTDAVRWNHSEPQLIAWQQGLTGYPIVDAAMRQLNETGWMHNRLRMITASFLVKD 360 Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424 LL+DWR+GE YFMSQLLDGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG+RFD +GTF Sbjct: 361 LLIDWRLGERYFMSQLLDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGERFDKEGTF 420 Query: 425 IRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481 IR WLPEL VP + IH P W + LNYP P+VDHK A TL + AAK+ Sbjct: 421 IRRWLPELAAVPDRDIHQPWRWAQQQQQHLNYPPPLVDHKLARLATLAAFDAAKRDG 477 >gi|168240558|ref|ZP_02665490.1| deoxyribodipyrimidine photo-lyase [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|194448497|ref|YP_002044740.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|194406801|gb|ACF67020.1| deoxyribodipyrimidine photo-lyase [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|205339950|gb|EDZ26714.1| deoxyribodipyrimidine photo-lyase [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] Length = 473 Score = 522 bits (1345), Expect = e-146, Method: Composition-based stats. Identities = 251/476 (52%), Positives = 334/476 (70%), Gaps = 4/476 (0%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M HLVW R DLR+ DN AL AAC ++ A+V+A++I+TP QW+ H ++ RQ+ FI A L Sbjct: 1 MPTHLVWFRRDLRLQDNLALAAACRDASARVLALYISTPAQWQAHDMAPRQAAFISAQLN 60 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 +Q +L++KGI +H+ ++F+ SIE + + C Q V+ LFYN QYE NE +RD +EK Sbjct: 61 ALQAALAEKGIPLLFHEVADFNASIETVKNVCRQHDVSHLFYNYQYEFNERQRDAAVEKT 120 Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 L VIC+ FDDSV+L PG+++ +MYKV+TPF+ A ++ L + +P P IR++G Sbjct: 121 LPS-VICEGFDDSVILAPGAVMTGNHEMYKVFTPFKNAWLKRLKEDIPPCVPAPKIRVSG 179 Query: 187 PVTPSNIPRFFDYPFQAIDP-MFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245 ++ P +YP QA D +FP+ E + LR+FC + Y +RD PA+ GTS+L Sbjct: 180 ALSTPLTPVSLNYPQQAFDAALFPVEENAVIAQLRQFCAQGADGYESRRDFPAVDGTSRL 239 Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305 S L+ G LSPRQC +RL E L WLNELIWREFYRHLM +YP++C + Sbjct: 240 SASLATGGLSPRQCLHRLLAEQPQALDGGPGSV--WLNELIWREFYRHLMTWYPALCKHQ 297 Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365 PFI WT+++ W ++ H QAW++G TG+PI+DAAMRQLN GWMHNRLRMITASFLVKDL Sbjct: 298 PFIRWTKRVAWQENPHYFQAWQKGETGYPIVDAAMRQLNATGWMHNRLRMITASFLVKDL 357 Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425 L+DWR+GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG+RFD G FI Sbjct: 358 LIDWRLGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGERFDRDGEFI 417 Query: 426 RHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481 R WLP L ++P + IH P W +K + L+YP PIV+HK+A TL+ Y AA+K + Sbjct: 418 RQWLPALRDIPGKAIHEPWRWAEKAGVVLDYPRPIVEHKQARIATLSAYEAARKGA 473 >gi|310767008|gb|ADP11958.1| deoxyribodipyrimidine photolyase (photoreactivation) [Erwinia sp. Ejp617] Length = 477 Score = 522 bits (1345), Expect = e-146, Method: Composition-based stats. Identities = 274/475 (57%), Positives = 347/475 (73%), Gaps = 5/475 (1%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M+ HLVWLRNDLRI DN ALYAAC + A VIA+FIATP QWR H ++ +Q+ FI+ SL Sbjct: 1 MTTHLVWLRNDLRINDNHALYAACRSKQANVIALFIATPGQWRTHLMAPKQAEFIWQSLQ 60 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 VQ+SL+ KGIV QC +F S+ L +C + RV +LFYN QYE+NE +RD +E+ Sbjct: 61 DVQQSLAAKGIVLHVAQCDDFSASVTLLQEFCREHRVNRLFYNYQYEVNERQRDAAVERT 120 Query: 127 LQH-RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185 LQH V+ + FDDS+LLPPGS+L +MYKV+TPF KA ++ L Q LP PA+R Sbjct: 121 LQHDNVVVQGFDDSLLLPPGSVLTGNREMYKVFTPFSKAFVKRLQQGLPECLPAPAVRPG 180 Query: 186 GPVTP-SNIPRFFDYPFQAIDP-MFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS 243 G V ++ DYP + ID +FP GE+ A+ LR+FC++ V Y ++R++PA GTS Sbjct: 181 GAVEARADSLVALDYPREDIDAGLFPSGEKAAIARLREFCQQAVADYPDKRNLPACDGTS 240 Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCM 303 +LS YL+ GVLSPRQC +RL ++ L + F WLNELIWREFYRHL+ +P++C Sbjct: 241 RLSVYLATGVLSPRQCLHRLLKQHPGALEDSR--VFVWLNELIWREFYRHLLVAFPALCR 298 Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363 +PF+ WT+ ++W DS L AW+QG TG+PI+DAAMRQLN++GWMHNRLRMITASFLVK Sbjct: 299 HQPFMRWTKSVKWRVDSQQLTAWQQGKTGYPIVDAAMRQLNSLGWMHNRLRMITASFLVK 358 Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423 DLL+DWR GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG+RFD G Sbjct: 359 DLLIDWREGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGERFDKDGE 418 Query: 424 FIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478 FIRHWLPEL +VP +YIH PH W KN +L+YP P+VDHK A TL+ + AAK Sbjct: 419 FIRHWLPELRHVPPEYIHQPHQWARKNRQTLDYPQPLVDHKLARQQTLDAFEAAK 473 >gi|238911653|ref|ZP_04655490.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp. enterica serovar Tennessee str. CDC07-0191] Length = 473 Score = 522 bits (1345), Expect = e-146, Method: Composition-based stats. Identities = 251/476 (52%), Positives = 335/476 (70%), Gaps = 4/476 (0%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M HLVW R DLR+ DN AL AAC ++ A+V+A++I+TP QW+ H ++ RQ+ FI A L Sbjct: 1 MPTHLVWFRRDLRLQDNLALAAACRDASARVLALYISTPAQWQAHDMAPRQAAFISAQLN 60 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 +Q +L++KGI +H+ ++F+ SI+ + + C Q V+ LFYN QYE NE +RD +EK Sbjct: 61 ALQTALAEKGIPLLFHEVADFNASIKTVKNICRQHDVSHLFYNYQYEFNERQRDAAVEKT 120 Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 L VIC+ FDDSV+L PG+++ +MYKV+TPF+ A ++ L + +P P IR++G Sbjct: 121 LPS-VICEGFDDSVILAPGAVMTGNHEMYKVFTPFKNAWLKRLKEDIPPCVPAPKIRVSG 179 Query: 187 PVTPSNIPRFFDYPFQAIDP-MFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245 ++ P +YP QA D +FP+ E + LR+FC + Y QRD PA++GTS+L Sbjct: 180 ALSTPLTPVSLNYPQQAFDAALFPVEENAVIAQLRQFCAQGADGYESQRDFPAVEGTSRL 239 Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305 S L+ G LSPRQC +RL E L WLNELIWREFYRHLM +YP++C + Sbjct: 240 SASLATGGLSPRQCLHRLLAEQPQALDGGPGSV--WLNELIWREFYRHLMTWYPALCKHQ 297 Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365 PFI WT+++ W ++ H QAW++G TG+PI+DAAMRQLN GWMHNRLRMITASFLVKDL Sbjct: 298 PFIRWTKRVAWQENPHYFQAWQKGETGYPIVDAAMRQLNATGWMHNRLRMITASFLVKDL 357 Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425 L+DWR+GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG+RFD G FI Sbjct: 358 LIDWRLGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGERFDRDGEFI 417 Query: 426 RHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481 R WLP L ++P + IH P W +K + L+YP PIV+HK+A TL+ Y AA+K + Sbjct: 418 RQWLPALRDIPGKAIHEPWRWAEKAGVVLDYPRPIVEHKQARIATLSAYEAARKGA 473 >gi|168230599|ref|ZP_02655657.1| deoxyribodipyrimidine photo-lyase [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|194472292|ref|ZP_03078276.1| deoxyribodipyrimidine photo-lyase [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|194458656|gb|EDX47495.1| deoxyribodipyrimidine photo-lyase [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|205334675|gb|EDZ21439.1| deoxyribodipyrimidine photo-lyase [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] Length = 473 Score = 522 bits (1344), Expect = e-146, Method: Composition-based stats. Identities = 252/476 (52%), Positives = 335/476 (70%), Gaps = 4/476 (0%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M HLVW R DLR+ DN AL AAC ++ A+V+A++I+TP QW+ H ++ RQ+ FI A L Sbjct: 1 MPTHLVWFRRDLRLQDNLALAAACRDASARVLALYISTPAQWQAHDMAPRQAAFISAQLN 60 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 +Q +L++KGI +H+ ++F+ SIE + + C Q V+ LFYN QYE NE +RD +EK Sbjct: 61 ALQAALAEKGIPLLFHEVADFNASIETVKNVCRQHDVSHLFYNYQYEFNERQRDAAVEKT 120 Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 L VIC+ FDDSV+L PG+++ +MYKV+TPF+ A ++ L + +P P IR++G Sbjct: 121 LPS-VICEGFDDSVILAPGAVMTGNHEMYKVFTPFKNAWLKRLKEDIPPCVPAPKIRVSG 179 Query: 187 PVTPSNIPRFFDYPFQAIDP-MFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245 ++ P +YP QA D +FP+ E + LR+FC + Y QRD PA++GTS+L Sbjct: 180 ALSTPLTPVSLNYPQQAFDAALFPVEENAVIAQLRQFCAQGADGYASQRDFPAVEGTSRL 239 Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305 S L+ G LSPRQC +RL E L WLNELIWREFYRHLM +YP++C + Sbjct: 240 SASLATGGLSPRQCLHRLLAEQPQALDGGPGSV--WLNELIWREFYRHLMTWYPALCKHQ 297 Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365 PFI WT+++ W ++ H QAW++G TG+PI+DAAMRQLN GWMHNRLRMITASFLVKDL Sbjct: 298 PFIRWTKRVAWQENPHYFQAWQKGETGYPIVDAAMRQLNATGWMHNRLRMITASFLVKDL 357 Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425 L+DWR+GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG+RFD G FI Sbjct: 358 LIDWRLGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGERFDRDGEFI 417 Query: 426 RHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481 R WLP L ++P + IH P W +K + L+YP PIV+HK+A TL+ Y AA+K + Sbjct: 418 RQWLPALRDIPGKAIHEPWRWAEKAGVMLDYPRPIVEHKQARIATLSAYEAARKGA 473 >gi|204929858|ref|ZP_03220879.1| deoxyribodipyrimidine photo-lyase [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|204320852|gb|EDZ06053.1| deoxyribodipyrimidine photo-lyase [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] Length = 473 Score = 521 bits (1343), Expect = e-146, Method: Composition-based stats. Identities = 253/476 (53%), Positives = 335/476 (70%), Gaps = 4/476 (0%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M HLVW R DLR+ DN AL AAC ++ A+V+A++I+TP QW+ H ++ RQ+ FI A L Sbjct: 1 MPTHLVWFRRDLRLQDNLALAAACRDASARVLALYISTPAQWQAHDMAPRQAAFISAQLN 60 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 +Q +L++KGI +H+ ++F+ SIE + + C Q V+ LFYN QYE NE +RD +EK Sbjct: 61 ALQAALAEKGIPLLFHEVADFNASIETVKNVCRQHDVSHLFYNYQYEFNERQRDAAVEKT 120 Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 L VIC+ FDDSV+L PG+++ +MYKV+TPF+ A ++ L + +P P IR++G Sbjct: 121 LPS-VICEGFDDSVILAPGAVMTGNHEMYKVFTPFKNAWLKRLKEDIPPCVPAPKIRVSG 179 Query: 187 PVTPSNIPRFFDYPFQAIDP-MFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245 ++ P +YP QA D +FP+ E + LR+FC + Y QRD PA+ GTS+L Sbjct: 180 ALSTPLTPVSLNYPQQAFDAALFPVEENAVIAQLRQFCAQGADEYESQRDFPAVDGTSRL 239 Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305 S L+ G LSPRQC +RL E L WLNELIWREFYRHLM +YP++C + Sbjct: 240 SASLATGGLSPRQCLHRLLAEQPQALDGGPGSV--WLNELIWREFYRHLMTWYPALCKHQ 297 Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365 PFI WT+++ W ++SH QAW++G TG+PI+DAAMRQLN GWMHNRLRMITASFLVKDL Sbjct: 298 PFIRWTKRVAWQENSHYFQAWQKGETGYPIVDAAMRQLNATGWMHNRLRMITASFLVKDL 357 Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425 L+DWR+GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG+RFD G FI Sbjct: 358 LIDWRLGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGERFDRDGEFI 417 Query: 426 RHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481 R WLP L ++P + IH P W +K + L+YP PIV+HK+A TL+ Y AA+K + Sbjct: 418 RQWLPALRDIPGKAIHEPWRWAEKAGVVLDYPRPIVEHKQARIATLSAYEAARKGA 473 >gi|197250843|ref|YP_002145681.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|197214546|gb|ACH51943.1| deoxyribodipyrimidine photo-lyase [Salmonella enterica subsp. enterica serovar Agona str. SL483] Length = 473 Score = 521 bits (1343), Expect = e-146, Method: Composition-based stats. Identities = 251/476 (52%), Positives = 335/476 (70%), Gaps = 4/476 (0%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M HLVW R DLR+ DN AL AAC ++ A+V+A++I+TP QW+ H ++ RQ+ FI A L Sbjct: 1 MPTHLVWFRRDLRLQDNLALAAACRDASARVLALYISTPAQWQAHDMAPRQAAFISAQLN 60 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 +Q +L++KGI +H+ ++F+ SI+ + + C Q V+ LFYN QYE NE +RD +EK Sbjct: 61 ALQTALAEKGIPLLFHEVADFNASIKTVKNVCRQHDVSHLFYNYQYEFNERQRDAAVEKT 120 Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 L VIC+ FDDSV+L PG+++ +MYKV+TPF+ A ++ L + +P P IR++G Sbjct: 121 LPS-VICEGFDDSVILAPGAVMTGNHEMYKVFTPFKNAWLKRLKEDIPPCVPAPKIRVSG 179 Query: 187 PVTPSNIPRFFDYPFQAIDP-MFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245 ++ P +YP QA D +FP+ E + LR+FC + Y +RD PA+ GTS+L Sbjct: 180 ALSTPLTPVSLNYPQQAFDAALFPVEENAVIAQLRQFCAQGADGYESRRDFPAVDGTSRL 239 Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305 S L+ G LSPRQC +RL E L WLNELIWREFYRHLM +YP++C + Sbjct: 240 SASLATGGLSPRQCLHRLLAEQPQALDGGPGSV--WLNELIWREFYRHLMTWYPALCKHQ 297 Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365 PFI WT+++ W ++SH QAW++G TG+PI+DAAMRQLN GWMHNRLRMITASFLVKDL Sbjct: 298 PFIRWTKRVAWQENSHYFQAWQKGETGYPIVDAAMRQLNATGWMHNRLRMITASFLVKDL 357 Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425 L+DWR+GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG+RFD G FI Sbjct: 358 LIDWRLGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGERFDRDGEFI 417 Query: 426 RHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481 R WLP L ++P + IH P W +K + L+YP PIV+HK+A TL+ Y AA+K + Sbjct: 418 RQWLPALRDIPGKAIHEPWRWAEKAGVVLDYPRPIVEHKQARIATLSAYEAARKGA 473 >gi|291616713|ref|YP_003519455.1| PhrB [Pantoea ananatis LMG 20103] gi|291151743|gb|ADD76327.1| PhrB [Pantoea ananatis LMG 20103] Length = 475 Score = 521 bits (1342), Expect = e-146, Method: Composition-based stats. Identities = 269/477 (56%), Positives = 335/477 (70%), Gaps = 4/477 (0%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M+ HLVWLRNDLRI DN AL+AAC DA+VIA+FIATP QW+QH ++ARQ FI+ SL Sbjct: 1 MTTHLVWLRNDLRINDNLALHAACTQPDARVIALFIATPGQWQQHEMAARQVAFIHQSLD 60 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 +Q SL+++GI +HQC +F SI++L +C +Q+V KLFYN QYE+NE RD EKR Sbjct: 61 MLQSSLAERGIPLHFHQCDDFAASIDFLVGFCQKQQVDKLFYNYQYEVNERERDASAEKR 120 Query: 127 L-QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185 L + V+C+ FDDS+LLPPGSI +MYKV+TPF KA ++ L Q +P P R Sbjct: 121 LHEANVVCQGFDDSLLLPPGSIQTGDGEMYKVFTPFSKAFLRRLQQGLPECVPAPKAREG 180 Query: 186 GPVTPSNIPRFFDYPFQAID-PMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244 P+ FDYP ID +FP GEQ A+ LR+F K+ V Y +QRD+PA+ TS+ Sbjct: 181 TPLKEPKSLPPFDYPKADIDTSLFPPGEQAAVKRLREFAKQAVLDYAKQRDLPALDSTSR 240 Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304 LS YLS GVLSPRQC +R+ E L A W+NELIWREFYRHL+ +P +C Sbjct: 241 LSVYLSTGVLSPRQCLHRILHEQPKALDSG--PAAVWINELIWREFYRHLIVAHPRLCKH 298 Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364 +PF+ WT + W ++S AWK G TG+PI+DAAMRQ+ TIGWMHNRLRMITASFLVKD Sbjct: 299 QPFVHWTRNVAWQRNSAHFDAWKAGKTGYPIVDAAMRQMQTIGWMHNRLRMITASFLVKD 358 Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424 LL+DWR GE YF+ QL+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG+RFD +G F Sbjct: 359 LLIDWREGERYFIQQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGERFDKEGEF 418 Query: 425 IRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481 IR +LPEL VP IH PH W KN+ L+YP PIV+HK A TL+ + AK + Sbjct: 419 IRRYLPELKEVPDSDIHQPHQWAQKNNKKLDYPAPIVEHKDARKKTLDAFERAKNAA 475 >gi|332160904|ref|YP_004297481.1| deoxyribodipyrimidine photolyase [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|318604809|emb|CBY26307.1| deoxyribodipyrimidine photolyase [Yersinia enterocolitica subsp. palearctica Y11] gi|325665134|gb|ADZ41778.1| deoxyribodipyrimidine photolyase [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|330862934|emb|CBX73069.1| deoxyribodipyrimidine photo-lyase [Yersinia enterocolitica W22703] Length = 481 Score = 521 bits (1342), Expect = e-146, Method: Composition-based stats. Identities = 281/477 (58%), Positives = 341/477 (71%), Gaps = 2/477 (0%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M+ HLVW RNDLR+TDN AL+ AC + A VIAVFIATP QW H ++ RQ+ F+ +L Sbjct: 1 MATHLVWFRNDLRVTDNLALHTACQDPQATVIAVFIATPAQWAAHDMAPRQAAFLLQNLQ 60 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 +Q +L+ + I YHQC +F DSI WLD +C QQ+V LFYN QYE+NE RD+ L + Sbjct: 61 LLQDALAARAIPLHYHQCDDFKDSITWLDDFCQQQQVDALFYNHQYELNERMRDEALVVQ 120 Query: 127 LQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185 + HR I C F D+VLLPPGSIL +MYKV+TPFR+A IQ L+ +D RS+P P R T Sbjct: 121 MGHRAIACHGFHDAVLLPPGSILTGNNEMYKVFTPFRRAFIQRLMMSDCRSVPAPKARTT 180 Query: 186 GPVTPSNIPRFFDYPFQAIDP-MFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244 V PS FDYP Q +D +FP GE+ AL LR+FC+E V Y +QRD PA+ GTS Sbjct: 181 AAVIPSQPLAPFDYPQQPVDSQLFPAGEEAALQRLRRFCREDVQDYQQQRDFPAVAGTSC 240 Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304 LSPYL++G+LSPRQC NRL+ E ++L GAF WLNELIWREFYRHL+ YP +C Sbjct: 241 LSPYLALGILSPRQCVNRLRAECPEVLENADGGAFIWLNELIWREFYRHLLVAYPRLCQH 300 Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364 PFI WT+ + WN L AW+QG TG+PI+DAAMRQLN GWMHNRLRMI+ASFLVKD Sbjct: 301 HPFIGWTDAVIWNHSEQQLIAWQQGRTGYPIVDAAMRQLNETGWMHNRLRMISASFLVKD 360 Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424 LL+DWR GE YFMSQLLDGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG+RFD G F Sbjct: 361 LLIDWRQGERYFMSQLLDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGERFDQDGVF 420 Query: 425 IRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481 IR WLPEL VP IH P W ++ SL+YP P+V+HK+A TL + AAK+ Sbjct: 421 IRRWLPELAAVPDSDIHQPWRWAERQQQSLDYPPPLVEHKQARLATLAAFEAAKRDG 477 >gi|153947154|ref|YP_001400093.1| deoxyribodipyrimidine photolyase [Yersinia pseudotuberculosis IP 31758] gi|152958649|gb|ABS46110.1| deoxyribodipyrimidine photolyase [Yersinia pseudotuberculosis IP 31758] Length = 487 Score = 521 bits (1342), Expect = e-145, Method: Composition-based stats. Identities = 277/477 (58%), Positives = 344/477 (72%), Gaps = 4/477 (0%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 MS HLVW RNDLR+TDN AL+AAC + A VIAVFIATP QW H ++ RQ+ F+ +L Sbjct: 1 MSTHLVWFRNDLRVTDNLALHAACQDPQASVIAVFIATPVQWAAHVMAPRQAAFLRQNLQ 60 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 +Q +LS +GI YHQC +F S WL +C QQ+V LFY++QYE+NE RD L + Sbjct: 61 HLQAALSARGIPLHYHQCDDFQASNTWLVDFCQQQQVDSLFYSQQYELNERLRDDALAVQ 120 Query: 127 LQHR-VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185 L R + C+SF DSVLL PG++L +MYKV+TPFR+A IQ L+ +D +P P R Sbjct: 121 LSERAITCQSFHDSVLLAPGTVLTGNNEMYKVFTPFRRAFIQRLLMSDNHCVPAPKARHA 180 Query: 186 GPVTPSNIPRFFDYPFQAIDP-MFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244 PV S +P FDYP Q++D +FP GE AL LR+FC+E+V Y + RD+PA+ GTS Sbjct: 181 PPVLLSPLP--FDYPQQSVDSQLFPAGEDAALQRLRRFCREQVQDYRQYRDLPAVPGTSC 238 Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304 LSPYL +GVLSPRQC+NRL E ++L SGAF+WLNELIWREFYRHL+ YP +C Sbjct: 239 LSPYLVLGVLSPRQCFNRLWAESPEMLENADSGAFTWLNELIWREFYRHLLVAYPRLCQH 298 Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364 PFI WT+ + WN+ L+AW+QG TG+PI+DAAMRQ+N GWMHNRLRMI+ASFLVKD Sbjct: 299 HPFIGWTDGLVWNRSESQLKAWQQGQTGYPIVDAAMRQMNETGWMHNRLRMISASFLVKD 358 Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424 LL+DWR GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG+RFD G F Sbjct: 359 LLIDWRQGERYFMSQLVDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGERFDKDGVF 418 Query: 425 IRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481 IR WLPEL VP IH P W ++ L+YP+P+VDHK+A TL + AAK+ S Sbjct: 419 IRRWLPELAAVPDSDIHQPWRWAERQQQHLDYPVPLVDHKQARLATLAAFEAAKRDS 475 >gi|259909092|ref|YP_002649448.1| deoxyribodipyrimidine photolyase [Erwinia pyrifoliae Ep1/96] gi|224964714|emb|CAX56231.1| Deoxyribodipyrimidine photo-lyase [Erwinia pyrifoliae Ep1/96] Length = 477 Score = 521 bits (1342), Expect = e-145, Method: Composition-based stats. Identities = 274/475 (57%), Positives = 347/475 (73%), Gaps = 5/475 (1%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M+ HLVWLRNDLRI DN ALYAAC + A VIA+FIATP QWR H ++ +Q+ FI+ SL Sbjct: 1 MTTHLVWLRNDLRINDNHALYAACRSEQANVIALFIATPGQWRTHLMAPKQAEFIWQSLQ 60 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 VQ+SL+ +GIV QC +F S+ L +C + RV +LFYN QYE+NE +RD +E+ Sbjct: 61 DVQQSLAARGIVLHVAQCDDFSASVTLLQEFCREHRVNRLFYNYQYEVNERQRDAAVERT 120 Query: 127 LQH-RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185 LQH V+ + FDDS+LLPPGS+L +MYKV+TPF KA ++ L Q LP PA+R Sbjct: 121 LQHDNVVVQGFDDSLLLPPGSVLTGNREMYKVFTPFSKAFVKRLQQGLPECLPAPAVRPG 180 Query: 186 GPVTP-SNIPRFFDYPFQAIDP-MFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS 243 G V + FDYP + ID +FP GE+ A+ LR+FC++ V Y ++R++PA GTS Sbjct: 181 GAVEARAGSLVAFDYPREDIDAGLFPSGEKAAIARLREFCQQAVADYPDKRNLPACDGTS 240 Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCM 303 +LS YL+ GVLSPRQC +RL ++ L + F WLNELIWREFYRHL+ +P++C Sbjct: 241 RLSVYLATGVLSPRQCLHRLLKQHPGALEDSR--VFVWLNELIWREFYRHLLVAFPALCR 298 Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363 +PF+ WT+ ++W DS L AW+QG TG+PI+DAAMRQLN++GWMHNRLRMITASFLVK Sbjct: 299 HQPFMRWTKSVKWRVDSQQLTAWQQGITGYPIVDAAMRQLNSLGWMHNRLRMITASFLVK 358 Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423 DLL+DWR GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG+RFD G Sbjct: 359 DLLIDWREGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGERFDKDGE 418 Query: 424 FIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478 FIRHWLPEL +VP +YIH PH W KN +L+YP P+VDHK A TL+ + AAK Sbjct: 419 FIRHWLPELRHVPPEYIHQPHQWARKNRQTLDYPQPLVDHKLARQQTLDAFEAAK 473 >gi|198244498|ref|YP_002214691.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|197939014|gb|ACH76347.1| deoxyribodipyrimidine photo-lyase [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|326622447|gb|EGE28792.1| deoxyribodipyrimidine photo-lyase [Salmonella enterica subsp. enterica serovar Dublin str. 3246] Length = 473 Score = 521 bits (1342), Expect = e-145, Method: Composition-based stats. Identities = 252/476 (52%), Positives = 335/476 (70%), Gaps = 4/476 (0%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M HLVW R DLR+ DN AL AAC ++ A+V+A++I+TP QW+ HG++ RQ+ FI A L Sbjct: 1 MPTHLVWFRRDLRLQDNLALAAACRDASARVLALYISTPAQWQAHGMAPRQAAFISAQLN 60 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 +Q +L++KGI +H+ ++F+ SIE + + C Q V+ LFYN QYE NE +RD +EK Sbjct: 61 ALQAALAEKGIPLLFHEVADFNASIETVKNVCRQHDVSHLFYNYQYEFNERQRDAAVEKT 120 Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 L VIC+ FDDSV+L PG+++ +MYKV+TPF+ A ++ L + +P P IR++G Sbjct: 121 LPS-VICEGFDDSVILAPGAVMTGNHEMYKVFTPFKNAWLKRLKEDIPPCVPAPKIRVSG 179 Query: 187 PVTPSNIPRFFDYPFQAIDP-MFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245 ++ P +YP QA D +FP+ E + LR+FC + Y +RD PA+ GTS+L Sbjct: 180 ALSTPLTPVSLNYPQQAFDAALFPVEENAVIAQLRQFCAQGADGYALRRDFPAVDGTSRL 239 Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305 S L+ G LSPRQC +RL E L WLNELIWREFYRHLM +YP++C + Sbjct: 240 SASLATGGLSPRQCLHRLLAEHPQALDGGPGSV--WLNELIWREFYRHLMTWYPALCKHQ 297 Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365 PFI WT+++ W ++ H QAW++G TG+PI+DAAMRQLN GWMHNRLRMITASFLVKDL Sbjct: 298 PFIRWTKRVAWQENPHYFQAWQKGETGYPIVDAAMRQLNATGWMHNRLRMITASFLVKDL 357 Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425 L+DWR+GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG+RFD G FI Sbjct: 358 LIDWRLGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGERFDRDGEFI 417 Query: 426 RHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481 R WLP L ++P + IH P W +K + L+YP PIV+HK+A TL+ Y AA+K + Sbjct: 418 RQWLPALRDIPGKAIHEPWRWAEKAGVVLDYPRPIVEHKQARIATLSAYEAARKGA 473 >gi|194444359|ref|YP_002039947.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194403022|gb|ACF63244.1| deoxyribodipyrimidine photo-lyase [Salmonella enterica subsp. enterica serovar Newport str. SL254] Length = 473 Score = 521 bits (1341), Expect = e-145, Method: Composition-based stats. Identities = 251/476 (52%), Positives = 334/476 (70%), Gaps = 4/476 (0%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M HLVW R DLR+ DN AL AAC ++ A+V+A++I+TP QW+ H ++ RQ+ FI A L Sbjct: 1 MPTHLVWFRRDLRLQDNLALAAACRDASARVLALYISTPAQWQAHDMAPRQAAFISAQLN 60 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 +Q +L++KGI +H+ ++F+ SIE + + C Q V+ LFYN QYE NE +RD +EK Sbjct: 61 ALQTALAEKGIPLLFHEVADFNASIETVKNVCRQHDVSHLFYNYQYEFNERQRDAAVEKT 120 Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 L VIC+ FDDSV+L PG+++ +MYKV+TPF+ A ++ L + +P P IR++G Sbjct: 121 LPS-VICEGFDDSVILAPGAVMTGNHEMYKVFTPFKNAWLKRLKEDIPPCVPAPKIRVSG 179 Query: 187 PVTPSNIPRFFDYPFQAIDP-MFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245 ++ P +YP QA D +FP+ E + LR+FC + Y +RD PA+ GTS+L Sbjct: 180 ALSTPLTPVSLNYPQQAFDAELFPVEENAVIAQLRQFCAQGADEYALRRDFPAVDGTSRL 239 Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305 S L+ G LSPRQC +RL E L WLNELIWREFYRHLM +YP++C + Sbjct: 240 SASLATGGLSPRQCLHRLLAEQPQALDGGPGSV--WLNELIWREFYRHLMTWYPALCKHQ 297 Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365 PFI WT+++ W ++ H QAW++G TG+PI+DAAMRQLN GWMHNRLRMITASFLVKDL Sbjct: 298 PFIRWTKRVAWQENPHYFQAWQKGETGYPIVDAAMRQLNATGWMHNRLRMITASFLVKDL 357 Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425 L+DWR+GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG+RFD G FI Sbjct: 358 LIDWRLGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGERFDRDGEFI 417 Query: 426 RHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481 R WLP L ++P + IH P W +K + L+YP PIV+HK+A TL+ Y AA+K + Sbjct: 418 RQWLPALRDIPGKAIHEPWRWAEKAGVVLDYPRPIVEHKQARIATLSAYEAARKGA 473 >gi|322615844|gb|EFY12762.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp. enterica serovar Montevideo str. 315996572] gi|322621240|gb|EFY18097.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-1] gi|322623660|gb|EFY20498.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-3] gi|322628932|gb|EFY25712.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-4] gi|322634912|gb|EFY31642.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-1] gi|322636560|gb|EFY33264.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-2] gi|322641813|gb|EFY38445.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp. enterica serovar Montevideo str. 531954] gi|322647801|gb|EFY44281.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp. enterica serovar Montevideo str. NC_MB110209-0054] gi|322651869|gb|EFY48238.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp. enterica serovar Montevideo str. OH_2009072675] gi|322652634|gb|EFY48983.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp. enterica serovar Montevideo str. CASC_09SCPH15965] gi|322658442|gb|EFY54705.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp. enterica serovar Montevideo str. 19N] gi|322664955|gb|EFY61146.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp. enterica serovar Montevideo str. 81038-01] gi|322668375|gb|EFY64531.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp. enterica serovar Montevideo str. MD_MDA09249507] gi|322670537|gb|EFY66670.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp. enterica serovar Montevideo str. 414877] gi|322675277|gb|EFY71353.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp. enterica serovar Montevideo str. 366867] gi|322679703|gb|EFY75744.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp. enterica serovar Montevideo str. 413180] gi|322684821|gb|EFY80820.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp. enterica serovar Montevideo str. 446600] gi|323200590|gb|EFZ85665.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp. enterica serovar Montevideo str. 556150-1] gi|323202262|gb|EFZ87310.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp. enterica serovar Montevideo str. 609460] gi|323205471|gb|EFZ90437.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp. enterica serovar Montevideo str. 507440-20] gi|323213490|gb|EFZ98283.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp. enterica serovar Montevideo str. 556152] gi|323215324|gb|EGA00069.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp. enterica serovar Montevideo str. MB101509-0077] gi|323220237|gb|EGA04693.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp. enterica serovar Montevideo str. MB102109-0047] gi|323231025|gb|EGA15141.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp. enterica serovar Montevideo str. MB111609-0052] gi|323234142|gb|EGA18231.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp. enterica serovar Montevideo str. 2009083312] gi|323238163|gb|EGA22221.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp. enterica serovar Montevideo str. 2009085258] gi|323243598|gb|EGA27616.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp. enterica serovar Montevideo str. 315731156] gi|323247378|gb|EGA31337.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2009159199] gi|323251366|gb|EGA35238.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008282] gi|323258495|gb|EGA42167.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008283] gi|323263118|gb|EGA46658.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008284] gi|323264721|gb|EGA48223.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008285] gi|323272232|gb|EGA55644.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008287] Length = 473 Score = 521 bits (1341), Expect = e-145, Method: Composition-based stats. Identities = 252/476 (52%), Positives = 334/476 (70%), Gaps = 4/476 (0%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M HLVW R DLR+ DN AL AAC ++ A+V+A++I+TP QW+ H ++ RQ+ FI A L Sbjct: 1 MPTHLVWFRRDLRLQDNLALAAACRDASARVLALYISTPAQWQAHDMAPRQAAFISAQLN 60 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 +Q +L++KGI +H+ ++F SIE + + C Q V+ LFYN QYE NE +RD +EK Sbjct: 61 ALQTALAEKGIPLLFHEVADFSASIETVKNVCRQHDVSHLFYNYQYEFNERQRDAAVEKT 120 Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 L VIC+ FDDSV+L PG+++ +MYKV+TPF+ A ++ L + +P P IR++G Sbjct: 121 LPS-VICEGFDDSVILAPGAVMTGNHEMYKVFTPFKNAWLKRLKEDIPPCVPAPKIRVSG 179 Query: 187 PVTPSNIPRFFDYPFQAIDP-MFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245 ++ P +YP QA D +FP+ E + LR+FC + Y +RD PA+ GTS+L Sbjct: 180 ALSTPLTPVSLNYPQQAFDAALFPVEENAVIAQLRQFCAQGADEYESRRDFPAVDGTSRL 239 Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305 S L+ G LSPRQC +RL E L WLNELIWREFYRHLM +YP++C + Sbjct: 240 SASLATGGLSPRQCLHRLLAEQPQALDGGPGSV--WLNELIWREFYRHLMIWYPALCKHQ 297 Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365 PFI WT+++ W ++SH QAW++G TG+PI+DAAMRQLN GWMHNRLRMITASFLVKDL Sbjct: 298 PFIRWTKRVAWQENSHDFQAWQKGETGYPIVDAAMRQLNATGWMHNRLRMITASFLVKDL 357 Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425 L+DWR+GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG+RFD G FI Sbjct: 358 LIDWRLGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGERFDRDGEFI 417 Query: 426 RHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481 R WLP L ++P + IH P W +K + L+YP PIV+HK+A TL+ Y AA+K + Sbjct: 418 RQWLPALRDIPGKAIHEPWRWAEKAGVVLDYPRPIVEHKQARIATLSAYEAARKGA 473 >gi|200390561|ref|ZP_03217172.1| deoxyribodipyrimidine photo-lyase [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|199603006|gb|EDZ01552.1| deoxyribodipyrimidine photo-lyase [Salmonella enterica subsp. enterica serovar Virchow str. SL491] Length = 473 Score = 521 bits (1341), Expect = e-145, Method: Composition-based stats. Identities = 251/476 (52%), Positives = 333/476 (69%), Gaps = 4/476 (0%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M HLVW R DLR+ DN AL AAC ++ A+V A++I+TP QW+ H ++ RQ+ FI A L Sbjct: 1 MPTHLVWFRRDLRLQDNLALAAACRDASARVRALYISTPAQWQAHDMAPRQAAFISAQLN 60 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 +Q +L++KGI +H+ ++F+ SIE + + C Q V+ LFYN QYE NE +RD +EK Sbjct: 61 ALQTALAEKGIPLLFHEVADFNASIETVKNVCRQHDVSHLFYNYQYEFNERQRDAAVEKT 120 Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 L VIC+ FDDSV+L PG+++ +MYKV+TPF+ A ++ L + +P P IR++G Sbjct: 121 LPS-VICEGFDDSVILAPGAVMTGNHEMYKVFTPFKNAWLKRLKEDIPPCVPAPKIRVSG 179 Query: 187 PVTPSNIPRFFDYPFQAIDP-MFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245 ++ P +YP QA D +FP+ E + LR+FC + Y +RD PA+ GTS+L Sbjct: 180 ALSTPLTPVSLNYPQQAFDAALFPVEENAVIAQLRQFCAQGADGYESRRDFPAVDGTSRL 239 Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305 S L+ G LSPRQC +RL E L WLNELIWREFYRHLM +YP++C + Sbjct: 240 SASLATGGLSPRQCLHRLLAEQPQALDGGPGSV--WLNELIWREFYRHLMTWYPALCKHQ 297 Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365 PFI WT+++ W ++ H QAW++G TG+PI+DAAMRQLN GWMHNRLRMITASFLVKDL Sbjct: 298 PFIRWTKRVAWQENPHYFQAWQKGETGYPIVDAAMRQLNATGWMHNRLRMITASFLVKDL 357 Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425 L+DWR+GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG+RFD G FI Sbjct: 358 LIDWRLGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGERFDRDGEFI 417 Query: 426 RHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481 R WLP L ++P + IH P W +K + L+YP PIV+HK+A TL+ Y AA+K + Sbjct: 418 RQWLPALRDIPGKAIHEPWRWAEKAGVVLDYPRPIVEHKQARIATLSAYEAARKGA 473 >gi|327393138|dbj|BAK10560.1| deoxyribodipyrimidine photo-lyase PhrB [Pantoea ananatis AJ13355] Length = 475 Score = 521 bits (1341), Expect = e-145, Method: Composition-based stats. Identities = 270/477 (56%), Positives = 335/477 (70%), Gaps = 4/477 (0%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M+ HLVWLRNDLRI DN AL+AAC DA+VIA+FIATP QW+QH ++ARQ FI+ SL Sbjct: 1 MTTHLVWLRNDLRINDNLALHAACTQPDARVIALFIATPGQWQQHEMAARQVAFIHQSLD 60 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 +Q SL+++G +HQC +F SI++L +C +Q+V KLFYN QYE+NE RD EKR Sbjct: 61 MLQSSLAERGFPLHFHQCDDFAASIDFLVGFCQKQQVDKLFYNYQYEVNERERDASAEKR 120 Query: 127 L-QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185 L + V+C+ FDDS+LLPPGSI +MYKV+TPF KA ++ L Q +P P R Sbjct: 121 LHEANVVCQGFDDSLLLPPGSIQTGDGEMYKVFTPFSKAFLRRLQQGLPECVPAPKAREG 180 Query: 186 GPVTPSNIPRFFDYPFQAID-PMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244 P+ FDYP ID +FP GEQ A+ LR+F K+ V Y +QRD+PA+ TS+ Sbjct: 181 APLKEPKSLPPFDYPKADIDTSLFPPGEQAAVKRLREFAKQAVLDYAKQRDLPALDSTSR 240 Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304 LS YLS GVLSPRQC +R+ E L S A W+NELIWREFYRHL+ +P +C Sbjct: 241 LSVYLSTGVLSPRQCLHRILHEQPKAL--ESSPAAVWINELIWREFYRHLIVAHPRLCKH 298 Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364 +PF+ WT + W ++S AWK G TG+PI+DAAMRQ+ TIGWMHNRLRMITASFLVKD Sbjct: 299 QPFVHWTRNVAWQRNSAHFDAWKAGKTGYPIVDAAMRQMQTIGWMHNRLRMITASFLVKD 358 Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424 LL+DWR GE YFM QL+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG+RFD +G F Sbjct: 359 LLIDWREGERYFMQQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGERFDKEGEF 418 Query: 425 IRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481 IR +LPEL VP IH PH W KN+ L+YP PIV+HK A TL+ + AK + Sbjct: 419 IRRYLPELKEVPDSDIHQPHQWAQKNNKKLDYPAPIVEHKDARKKTLDAFERAKNAA 475 >gi|16764079|ref|NP_459694.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|167992982|ref|ZP_02574077.1| deoxyribodipyrimidine photo-lyase [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|197262487|ref|ZP_03162561.1| deoxyribodipyrimidine photo-lyase [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|207856166|ref|YP_002242817.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|20141633|sp|P25078|PHR_SALTY RecName: Full=Deoxyribodipyrimidine photo-lyase; AltName: Full=DNA photolyase; AltName: Full=Photoreactivating enzyme gi|16419217|gb|AAL19653.1| deoxyribodipyrimidine photolyase (photoreactivation) [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|197240742|gb|EDY23362.1| deoxyribodipyrimidine photo-lyase [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|205328867|gb|EDZ15631.1| deoxyribodipyrimidine photo-lyase [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|206707969|emb|CAR32258.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|261245973|emb|CBG23775.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp. enterica serovar Typhimurium str. D23580] gi|267992447|gb|ACY87332.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S] gi|301157301|emb|CBW16789.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344] gi|312911734|dbj|BAJ35708.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp. enterica serovar Typhimurium str. T000240] gi|320084977|emb|CBY94766.1| deoxyribodipyrimidine photolyase (photoreactivation) [Salmonella enterica subsp. enterica serovar Weltevreden str. 2007-60-3289-1] gi|321226285|gb|EFX51336.1| Deoxyribodipyrimidine photolyase [Salmonella enterica subsp. enterica serovar Typhimurium str. TN061786] gi|323129020|gb|ADX16450.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp. enterica serovar Typhimurium str. 4/74] gi|332987646|gb|AEF06629.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1] Length = 473 Score = 520 bits (1340), Expect = e-145, Method: Composition-based stats. Identities = 251/476 (52%), Positives = 334/476 (70%), Gaps = 4/476 (0%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M HLVW R DLR+ DN AL AAC ++ A+V+A++I+TP QW+ H ++ RQ+ FI A L Sbjct: 1 MPTHLVWFRRDLRLQDNLALAAACRDASARVLALYISTPAQWQAHDMAPRQAAFISAQLN 60 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 +Q +L++KGI +H+ ++F+ SIE + + C Q V+ LFYN QYE NE +RD +EK Sbjct: 61 ALQTALAEKGIPLLFHEVADFNASIETVKNVCRQHDVSHLFYNYQYEFNERQRDAAVEKT 120 Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 L VIC+ FDDSV+L PG+++ +MYKV+TPF+ A ++ L + +P P IR++G Sbjct: 121 LPS-VICEGFDDSVILAPGAVMTGNHEMYKVFTPFKNAWLKRLKEDIPPCVPAPKIRVSG 179 Query: 187 PVTPSNIPRFFDYPFQAIDP-MFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245 ++ P +YP QA D +FP+ E + LR+FC + Y +RD PA+ GTS+L Sbjct: 180 ALSTPLTPVSLNYPQQAFDAALFPVEENAVIAQLRQFCAQGADEYALRRDFPAVDGTSRL 239 Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305 S L+ G LSPRQC +RL E L WLNELIWREFYRHLM +YP++C + Sbjct: 240 SASLATGGLSPRQCLHRLLAEQPQALDGGPGSV--WLNELIWREFYRHLMTWYPALCKHQ 297 Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365 PFI WT+++ W ++ H QAW++G TG+PI+DAAMRQLN GWMHNRLRMITASFLVKDL Sbjct: 298 PFIRWTKRVAWQENPHYFQAWQKGETGYPIVDAAMRQLNATGWMHNRLRMITASFLVKDL 357 Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425 L+DWR+GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG+RFD G FI Sbjct: 358 LIDWRLGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGERFDRDGEFI 417 Query: 426 RHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481 R WLP L ++P + IH P W +K + L+YP PIV+HK+A TL+ Y AA+K + Sbjct: 418 RQWLPALRDIPGKAIHEPWRWAEKAGVVLDYPRPIVEHKQARIATLSAYEAARKGA 473 >gi|168467738|ref|ZP_02701575.1| deoxyribodipyrimidine photo-lyase [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|195629172|gb|EDX48540.1| deoxyribodipyrimidine photo-lyase [Salmonella enterica subsp. enterica serovar Newport str. SL317] Length = 473 Score = 520 bits (1339), Expect = e-145, Method: Composition-based stats. Identities = 251/476 (52%), Positives = 334/476 (70%), Gaps = 4/476 (0%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M HLVW R DLR+ DN AL AAC ++ A+V+A++I+TP QW+ H ++ RQ+ FI A L Sbjct: 1 MPTHLVWFRRDLRLQDNLALAAACRDASARVLALYISTPAQWQAHDMAPRQAAFISAQLN 60 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 +Q +L++KGI +H+ ++F+ SIE + + C Q V+ LFYN QYE NE +RD +EK Sbjct: 61 ALQAALAEKGIPLLFHEVADFNASIETVKNVCRQHDVSHLFYNYQYEFNERQRDAAVEKT 120 Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 L VIC+ FDDSV+L PG+++ +MYKV+TPF+ A ++ L + +P P IR++G Sbjct: 121 LPS-VICEGFDDSVILAPGAVMTGNHEMYKVFTPFKNAWLKRLKEDIPPCVPAPKIRVSG 179 Query: 187 PVTPSNIPRFFDYPFQAIDP-MFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245 ++ P +YP QA D +FP+ E + LR+FC + Y +RD PA+ GTS+L Sbjct: 180 ALSTPLTPVSLNYPQQAFDAALFPVEENAVIAQLRQFCAQGADEYALRRDFPAVDGTSRL 239 Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305 S L+ G LSPRQC +RL E L WLNELIWREFYRHLM +YP++C + Sbjct: 240 SASLATGGLSPRQCLHRLLAEQPQALDGGPGSV--WLNELIWREFYRHLMTWYPALCKHQ 297 Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365 PFI WT+++ W ++ H QAW++G TG+PI+DAAMRQLN GWMHNRLRMITASFLVKDL Sbjct: 298 PFIRWTKRVAWQENPHYFQAWQKGETGYPIVDAAMRQLNATGWMHNRLRMITASFLVKDL 357 Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425 L+DWR+GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG+RFD G FI Sbjct: 358 LIDWRLGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGERFDRDGEFI 417 Query: 426 RHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481 R WLP L ++P + IH P W +K + L+YP PIV+HK+A TL+ Y AA+K + Sbjct: 418 RQWLPALRDIPGKAIHEPWRWAEKAGVVLDYPRPIVEHKQARIATLSAYEAARKGA 473 >gi|168264324|ref|ZP_02686297.1| deoxyribodipyrimidine photo-lyase [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|205347157|gb|EDZ33788.1| deoxyribodipyrimidine photo-lyase [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] Length = 473 Score = 519 bits (1338), Expect = e-145, Method: Composition-based stats. Identities = 251/476 (52%), Positives = 334/476 (70%), Gaps = 4/476 (0%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M HLVW R DLR+ DN AL AAC ++ A+V+A++I+TP QW+ H ++ RQ+ FI A L Sbjct: 1 MPTHLVWFRRDLRLQDNLALAAACRDASARVLALYISTPAQWQAHDMAPRQAAFISAQLN 60 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 +Q +L++KGI +H+ ++F+ SIE + + C Q V+ LFYN QYE NE +RD +EK Sbjct: 61 ALQAALAEKGIPLLFHEVADFNASIETVKNVCRQHDVSHLFYNYQYEFNERQRDAAVEKT 120 Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 L VIC+ FDDSV+L PG+++ +MYKV+TPF+ A ++ L + +P P IR++G Sbjct: 121 LPS-VICEGFDDSVILAPGAVMTGNHEMYKVFTPFKNAWLKRLKEDIPPCVPAPKIRVSG 179 Query: 187 PVTPSNIPRFFDYPFQAIDP-MFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245 ++ P +YP QA D +FP+ E + LR+FC + Y +RD PA+ GTS+L Sbjct: 180 ALSTPLTPVSLNYPQQAFDAALFPVEENAVIAQLRQFCAQGADEYALRRDFPAVDGTSRL 239 Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305 S L+ G LSPRQC +RL E L WLNELIWREFYRHLM +YP++C + Sbjct: 240 SASLATGGLSPRQCLHRLLAELPQALDGGPGSV--WLNELIWREFYRHLMTWYPALCKHQ 297 Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365 PFI WT+++ W ++ H QAW++G TG+PI+DAAMRQLN GWMHNRLRMITASFLVKDL Sbjct: 298 PFIRWTKRVAWQENPHYFQAWQKGETGYPIVDAAMRQLNATGWMHNRLRMITASFLVKDL 357 Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425 L+DWR+GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG+RFD G FI Sbjct: 358 LIDWRLGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGERFDRDGEFI 417 Query: 426 RHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481 R WLP L ++P + IH P W +K + L+YP PIV+HK+A TL+ Y AA+K + Sbjct: 418 RQWLPALRDIPGKAIHEPWRWAEKAGVVLDYPRPIVEHKQARIATLSAYEAARKGA 473 >gi|283784466|ref|YP_003364331.1| deoxyribodipyrimidine photolyase [Citrobacter rodentium ICC168] gi|282947920|emb|CBG87482.1| deoxyribodipyrimidine photolyase [Citrobacter rodentium ICC168] Length = 472 Score = 519 bits (1338), Expect = e-145, Method: Composition-based stats. Identities = 247/475 (52%), Positives = 320/475 (67%), Gaps = 3/475 (0%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 MS HLVW R DLR+ DN AL AAC +S A+V+A++I+TP QW +H +S RQ+ FI A L Sbjct: 1 MSTHLVWFRCDLRLHDNLALAAACRSSTARVLALYISTPAQWTKHTMSPRQAAFIAAQLE 60 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 +Q++L+ KGI + + ++FD S+E + + C VT LFYN QYE+NE RD +EK Sbjct: 61 ALQQALADKGIPLLFEETADFDASVETVKAVCESHDVTHLFYNYQYELNERERDAAVEKA 120 Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 L+ +VIC+ FDDSV+LPPGS++ +MYKV+TPF+ A ++ L + P R Sbjct: 121 LR-KVICEGFDDSVILPPGSVMTGNHEMYKVFTPFKNAWLKRLKEGMPECAAAPKARDRA 179 Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246 V P Q +FP+ E+ + LR+FC++ Y QRD PA GTS+LS Sbjct: 180 AVAPQQKITLNYPQQQFDRTLFPVDEKAVIAQLRQFCQQGAGEYEHQRDFPATDGTSRLS 239 Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP 306 L+ G LSPRQC +RL E L WLNELIWREFYRHLM P++C +P Sbjct: 240 ASLATGGLSPRQCLHRLLAEHPQALDGGAGSV--WLNELIWREFYRHLMTRNPALCKHRP 297 Query: 307 FIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLL 366 FI WT+++ W ++ QAW++G TG+PI+DAAMRQLN GWMHNRLRMITASFLVKDLL Sbjct: 298 FIAWTDRVAWRDNAAHFQAWQEGKTGYPIVDAAMRQLNATGWMHNRLRMITASFLVKDLL 357 Query: 367 VDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIR 426 +DWR GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG++FD G FIR Sbjct: 358 IDWRKGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGEKFDRDGEFIR 417 Query: 427 HWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481 W+PEL VP + IH P W + ++L+YP P+VDHK+A TL Y AA+K + Sbjct: 418 RWIPELREVPGKAIHEPWKWANSVGVTLSYPQPVVDHKQARATTLAAYEAARKGA 472 >gi|283834013|ref|ZP_06353754.1| deoxyribodipyrimidine photolyase [Citrobacter youngae ATCC 29220] gi|291070150|gb|EFE08259.1| deoxyribodipyrimidine photolyase [Citrobacter youngae ATCC 29220] Length = 472 Score = 519 bits (1338), Expect = e-145, Method: Composition-based stats. Identities = 251/475 (52%), Positives = 328/475 (69%), Gaps = 4/475 (0%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M+ HLVW R DLR+ DN AL AAC + A+V+A++IATP QW+ H ++ RQ+ F+ A L Sbjct: 1 MTTHLVWFRRDLRLHDNLALAAACRDRSAQVLALYIATPGQWQAHDMAPRQAAFVSAQLN 60 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 +Q +L++KGI +H+ ++F S++ + CLQ V++LFYN QYEINE +RD +EK Sbjct: 61 TLQTALAEKGIPLLFHEVADFAASVDTVKRVCLQHGVSRLFYNYQYEINERQRDANVEKS 120 Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 L V+C+ FDDSV+LPPG+++ +MYKV+TPF+ A ++ + + P R +G Sbjct: 121 LPQ-VVCEGFDDSVILPPGAVMTGNHEMYKVFTPFKNAWLKRIKDGIPECVSAPKERASG 179 Query: 187 PVTPSNIPRFFDYPFQAIDPMF-PIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245 + YP Q D + P E+ A+ LR+FC++ Y ++RD PAI GTS+L Sbjct: 180 ALDAPLTAITLSYPQQEFDAQWFPADEKLAIAQLRQFCQQAAGEYEQRRDFPAINGTSRL 239 Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305 S L+ G LSPRQC NRL E L WLNELIWREFYRHLM ++P++C + Sbjct: 240 SASLATGGLSPRQCLNRLLAEQPQALEGGAGSV--WLNELIWREFYRHLMTYHPALCRHQ 297 Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365 PFI WTE+++W + LQAW+ G TG+PI+DAAMRQLN GWMHNRLRMI ASFLVKDL Sbjct: 298 PFIRWTERVQWQNNPAHLQAWQTGKTGYPIVDAAMRQLNATGWMHNRLRMIAASFLVKDL 357 Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425 L+DWR GE+YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG++FD G FI Sbjct: 358 LIDWRKGEQYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGEKFDRDGEFI 417 Query: 426 RHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQ 480 R WLPEL NVP + IH P SW + +LNYP PIVDHK+A TL Y AA+K+ Sbjct: 418 RQWLPELRNVPGKAIHNPWSWAENAQATLNYPRPIVDHKQARLATLAAYEAARKE 472 >gi|238756042|ref|ZP_04617366.1| Deoxyribodipyrimidine photo-lyase [Yersinia ruckeri ATCC 29473] gi|238705767|gb|EEP98160.1| Deoxyribodipyrimidine photo-lyase [Yersinia ruckeri ATCC 29473] Length = 479 Score = 519 bits (1338), Expect = e-145, Method: Composition-based stats. Identities = 281/474 (59%), Positives = 352/474 (74%), Gaps = 2/474 (0%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M+ HL+W R+DLR+TDN AL+AAC + A+VIAVFIATP+QW H +S +Q+ FI +L Sbjct: 1 MATHLIWFRHDLRVTDNLALHAACQDPQAQVIAVFIATPQQWAAHNMSPKQATFIQQNLQ 60 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 +Q++L+ + I YHQC +FD S WL ++ +++V KLFYN QYE+NE RRD LE Sbjct: 61 CLQQALALRSIPLYYHQCHDFDASRRWLAAFSREKQVDKLFYNHQYELNERRRDAELEDS 120 Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 L+ +V C+ + DS+LL PGS+L MYK+YTPFR+A IQ L+ +D + +P P R Sbjct: 121 LRGQVACQGYHDSLLLAPGSVLTGNGDMYKIYTPFRRAFIQRLLISDCQCVPAPRAR-GE 179 Query: 187 PVTPSNIPRFFDYPFQAIDP-MFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245 P+T FDYP + +D +FP GE+ AL LR+FC+E V Y +QRD+PAI GTSQL Sbjct: 180 PITTIQPLAPFDYPTENVDSVLFPAGEEAALQRLRQFCREPVRDYHQQRDLPAIAGTSQL 239 Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305 SPYL+IG LSPRQC+NRL+ E D+L +P SGAFSWLNELIWREFYRHL+ YP +C + Sbjct: 240 SPYLAIGQLSPRQCFNRLRVECPDMLEQPDSGAFSWLNELIWREFYRHLLVAYPRLCQHR 299 Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365 PFI WT+++ WN D+ LQAW+QG TG+PI+DAAMRQ+N GWMHNRLRMITASFLVKDL Sbjct: 300 PFIGWTDEVRWNTDAERLQAWQQGMTGYPIVDAAMRQMNATGWMHNRLRMITASFLVKDL 359 Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425 LVDWR GE YFMS+LLDGDLA+NNGGWQWAASTG DS PYFRIFNPT QG+RFD G FI Sbjct: 360 LVDWRQGERYFMSKLLDGDLAANNGGWQWAASTGTDSAPYFRIFNPTTQGERFDKHGVFI 419 Query: 426 RHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479 RHWLPEL VP IH P W + L+YPLP+VDHK+A TL + AA++ Sbjct: 420 RHWLPELAAVPASDIHQPWRWAQRQQQHLDYPLPMVDHKQARLDTLAAFEAARR 473 >gi|108808420|ref|YP_652336.1| deoxyribodipyrimidine photolyase [Yersinia pestis Antiqua] gi|167398528|ref|ZP_02304052.1| deoxyribodipyrimidine photolyase [Yersinia pestis biovar Antiqua str. UG05-0454] gi|108780333|gb|ABG14391.1| Deoxyribodipyrimidine photo-lyase type I [Yersinia pestis Antiqua] gi|167051032|gb|EDR62440.1| deoxyribodipyrimidine photolyase [Yersinia pestis biovar Antiqua str. UG05-0454] Length = 485 Score = 519 bits (1337), Expect = e-145, Method: Composition-based stats. Identities = 277/477 (58%), Positives = 345/477 (72%), Gaps = 6/477 (1%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 MS HLVW RNDLR+TDN AL+AAC + A VIAVFIATP QW HG++ RQ+ F+ +L Sbjct: 1 MSTHLVWFRNDLRVTDNLALHAACQDPQASVIAVFIATPVQWAAHGMAPRQAAFLRQNLQ 60 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 +Q +L+ +GI YHQC +F S WL +C QQ+V LFY++QYE+NE RD L + Sbjct: 61 HLQAALAARGIPLHYHQCDDFQASNTWLVDFCQQQQVDSLFYSQQYELNERLRDDALAVQ 120 Query: 127 LQHR-VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185 L R + C+SF DSVLL PG++L +MYKV+TPFR+A IQ L+ +D +P P R Sbjct: 121 LSERAITCQSFHDSVLLAPGTVLTGNNEMYKVFTPFRRAFIQRLLMSDNHCVPAPKARHA 180 Query: 186 GPVTPSNIPRFFDYPFQAIDP-MFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244 PV S +P FDYP Q++D +FP GE AL LR+FC+E+V Y + RD+PA+ GTS Sbjct: 181 PPVLLSPLP--FDYPQQSVDSQLFPAGEDAALQRLRRFCREQVQDYRQYRDLPAVPGTSC 238 Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304 LSPYL +GVLSPRQC+NRL E ++L SGAF+WLNELIWREFYRHL+ YP +C Sbjct: 239 LSPYLVLGVLSPRQCFNRLWAESPEMLENADSGAFTWLNELIWREFYRHLLVAYPRLCQH 298 Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364 PFI WT+ + WN+ L+AW+QG TG+PI+DAAMRQ+N GWMHNRLRMI+ASFLVKD Sbjct: 299 HPFIGWTDGLVWNRSESQLKAWQQGQTGYPIVDAAMRQMNETGWMHNRLRMISASFLVKD 358 Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424 LL+DWR GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG+RFD G F Sbjct: 359 LLIDWRQGERYFMSQLVDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGERFDKDGVF 418 Query: 425 IRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481 IR WLPEL VP IH P W ++ L +YP+P+VDHK+A TL + AAK+ S Sbjct: 419 IRRWLPELAAVPDSDIHQPWRWAERQHL--DYPVPLVDHKQARLATLAAFEAAKRDS 473 >gi|238790472|ref|ZP_04634241.1| Deoxyribodipyrimidine photo-lyase [Yersinia frederiksenii ATCC 33641] gi|238721416|gb|EEQ13087.1| Deoxyribodipyrimidine photo-lyase [Yersinia frederiksenii ATCC 33641] Length = 481 Score = 519 bits (1336), Expect = e-145, Method: Composition-based stats. Identities = 277/477 (58%), Positives = 336/477 (70%), Gaps = 2/477 (0%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M+ HLVW RNDLR+TDN AL+AAC + A VIAVF+ATP QW H ++ RQ+ F+ +L Sbjct: 1 MATHLVWFRNDLRLTDNLALHAACQDPQATVIAVFVATPTQWATHDMAPRQAAFLLQNLQ 60 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 Q+Q +L+ + I YHQC +F SI+WLD +C Q +V LFYN+QYE+NE RD L R Sbjct: 61 QLQTALAARAIPLHYHQCDDFQGSIDWLDDFCQQHQVNVLFYNQQYELNEQLRDNALVAR 120 Query: 127 LQHR-VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185 L R + C SF DSVLLPPGS+L +MYKV+TPFR+A IQ L+ +D S+P P R Sbjct: 121 LNGRDIACNSFHDSVLLPPGSVLTGNNEMYKVFTPFRRAFIQRLIMSDCGSVPAPKARSA 180 Query: 186 GPVTPSNIPRFFDYPFQAIDP-MFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244 FDYP Q +D +FP GE+ AL LR FC+E+V Y +QRD PAI TS Sbjct: 181 SMEIVPQPLTPFDYPQQPLDNVLFPAGEEAALQRLRTFCREQVQDYQQQRDFPAIAATSC 240 Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304 LSPYL++G+LSPRQC NRL+ E ++L GAF WLNELIWREFYRHL+ YP +C Sbjct: 241 LSPYLALGILSPRQCVNRLRAECPEVLENADGGAFIWLNELIWREFYRHLLVAYPRLCQH 300 Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364 +PFI WT+ + WN L AW+QG TG+PI+DAAMRQLN GWMHNRLRMI+ASFLVKD Sbjct: 301 RPFIGWTDAVVWNHSQQQLIAWQQGQTGYPIVDAAMRQLNETGWMHNRLRMISASFLVKD 360 Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424 LL+DWR GE YFMSQLLDGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG+RFD G F Sbjct: 361 LLIDWRQGERYFMSQLLDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGERFDKDGVF 420 Query: 425 IRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481 IR WLPEL VP IH P +W + L+YPLP+VDHK A TL + AAK+ Sbjct: 421 IRRWLPELAMVPDSDIHQPWNWAQRQQQPLDYPLPLVDHKAARLATLAAFDAAKRDG 477 >gi|168820166|ref|ZP_02832166.1| deoxyribodipyrimidine photo-lyase [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|205343136|gb|EDZ29900.1| deoxyribodipyrimidine photo-lyase [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] Length = 473 Score = 519 bits (1336), Expect = e-145, Method: Composition-based stats. Identities = 251/476 (52%), Positives = 333/476 (69%), Gaps = 4/476 (0%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M HLVW R DLR+ DN AL AAC ++ A+V+A++I+TP QW+ H ++ RQ+ FI A L Sbjct: 1 MPTHLVWFRRDLRLQDNLALAAACRDASARVLALYISTPAQWQAHDMAPRQAAFISAQLN 60 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 +Q +L++KGI +H+ ++F+ SIE + + C Q V+ LFYN QYE NE +RD +EK Sbjct: 61 ALQTALAEKGIPLLFHEVADFNASIETVKNVCRQHDVSHLFYNYQYEFNERQRDAAVEKT 120 Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 L VIC+ FDDSV+L PG+++ +MYKV+TPF+ A ++ L + +P P IR++G Sbjct: 121 LPS-VICEGFDDSVILAPGAVMTGNHEMYKVFTPFKNAWLKRLKEDIPPCVPAPKIRVSG 179 Query: 187 PVTPSNIPRFFDYPFQAIDP-MFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245 ++ P +YP QA D +FP+ E + LR+FC + Y +RD PA+ GTS+L Sbjct: 180 ALSTPLTPVSLNYPQQAFDAALFPVEENAVIAQLRQFCAQGADEYALRRDFPAVDGTSRL 239 Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305 S L+ G LSPRQC +RL E L WLNELIWREFYRHLM +YP++C + Sbjct: 240 SASLATGGLSPRQCLHRLLAEQPQALDGGPGSV--WLNELIWREFYRHLMTWYPALCKHQ 297 Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365 PFI WT ++ W ++ H QAW++G TG+PI+DAAMRQLN GWMHNRLRMITASFLVKDL Sbjct: 298 PFIRWTIRVAWQENPHYFQAWQKGETGYPIVDAAMRQLNATGWMHNRLRMITASFLVKDL 357 Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425 L+DWR+GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG+RFD G FI Sbjct: 358 LIDWRLGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGERFDRDGEFI 417 Query: 426 RHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481 R WLP L ++P + IH P W +K + L+YP PIV+HK+A TL+ Y AA+K + Sbjct: 418 RQWLPALRDIPGKAIHEPWRWAEKAGVVLDYPRPIVEHKQARIATLSAYEAARKGA 473 >gi|16759651|ref|NP_455268.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp. enterica serovar Typhi str. CT18] gi|29142576|ref|NP_805918.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|213163180|ref|ZP_03348890.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp. enterica serovar Typhi str. E00-7866] gi|213865098|ref|ZP_03387217.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp. enterica serovar Typhi str. M223] gi|289826651|ref|ZP_06545657.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp. enterica serovar Typhi str. E98-3139] gi|25291449|pir||AI0587 deoxyribodipyrimidine photolyase [imported] - Salmonella enterica subsp. enterica serovar Typhi (strain CT18) gi|16501943|emb|CAD05171.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp. enterica serovar Typhi] gi|29138207|gb|AAO69778.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] Length = 473 Score = 518 bits (1335), Expect = e-145, Method: Composition-based stats. Identities = 250/476 (52%), Positives = 332/476 (69%), Gaps = 4/476 (0%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M HLVW R DLR+ DN AL AAC ++ A+V+A++I+TP QW+ H ++ RQ+ FI A L Sbjct: 1 MPTHLVWFRRDLRLQDNLALAAACRDASARVLALYISTPAQWQAHDMAPRQAAFISAQLN 60 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 +Q +L++KGI +H+ ++F+ SIE + + C Q V+ LFYN QYE NE +RD +EK Sbjct: 61 ALQTALAEKGIPLLFHEVADFNASIETVKNVCRQHDVSHLFYNYQYEFNERQRDAAVEKT 120 Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 L VIC+ FDDSV+L PG+++ +MYKV+TPF+ A ++ L + +P P IR++G Sbjct: 121 LPS-VICEGFDDSVILAPGAVMTGNHEMYKVFTPFKNAWLKRLKEDIPPCVPAPKIRVSG 179 Query: 187 PVTPSNIPRFFDYPFQAIDP-MFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245 ++ P +YP QA D +FP+ E + LR FC + Y +RD PA+ GTS+L Sbjct: 180 ALSIPLTPVSLNYPQQAFDAALFPVEENAVIAQLRHFCSQGADEYASRRDFPAVDGTSRL 239 Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305 S L+ G LSPRQC +RL E L WLNELIWREFYRHLM +YP++C + Sbjct: 240 SASLATGGLSPRQCLHRLLAEQPQALDGGPGSV--WLNELIWREFYRHLMTWYPALCKHQ 297 Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365 PFI WT+++ W ++ H QAW++G TG+PI+DAAMRQLN GWMHNRLRMITASFLVKDL Sbjct: 298 PFIRWTKRVAWQENPHYFQAWQKGETGYPIVDAAMRQLNATGWMHNRLRMITASFLVKDL 357 Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425 L+DWR+GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT Q +RFD G FI Sbjct: 358 LIDWRLGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQRERFDRDGEFI 417 Query: 426 RHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481 R WLP L ++P + IH P W +K + L+YP PIV+HK+A TL+ Y AA+K + Sbjct: 418 RQWLPALRDIPGKAIHEPWRWAEKAGVVLDYPRPIVEHKQARIATLSAYEAARKGA 473 >gi|56414171|ref|YP_151246.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|197363094|ref|YP_002142731.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|56128428|gb|AAV77934.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|197094571|emb|CAR60092.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] Length = 473 Score = 518 bits (1335), Expect = e-145, Method: Composition-based stats. Identities = 250/476 (52%), Positives = 332/476 (69%), Gaps = 4/476 (0%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M HLVW R DLR+ DN AL AAC ++ A+V+A++I+TP QW+ H ++ RQ+ FI A L Sbjct: 1 MPTHLVWFRRDLRLQDNLALAAACRDASARVLALYISTPAQWQAHDMAPRQAAFISAQLN 60 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 +Q +L++KGI +H+ ++F+ SIE + + C Q V+ LFYN QYE NE +RD +EK Sbjct: 61 ALQTALAEKGIPLLFHEVADFNASIETVKNVCRQHDVSHLFYNYQYEFNERQRDAAVEKT 120 Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 L VIC+ FDDSV+L PG+++ +MYKV+TPF+ A ++ L + +P P IR++G Sbjct: 121 LPS-VICEGFDDSVILAPGAVMTGNHEMYKVFTPFKNAWLKRLKEDIPPCVPAPKIRVSG 179 Query: 187 PVTPSNIPRFFDYPFQAIDP-MFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245 ++ P +YP QA D +FP+ E + LR FC + Y +RD PA+ GTS+L Sbjct: 180 ALSIPLTPVSLNYPQQAFDAALFPVEENAVIAQLRHFCSQGADEYASRRDFPAVDGTSRL 239 Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305 S L+ G LSPRQC +RL E L WLNELIWREFYRHLM +YP++C + Sbjct: 240 SASLATGGLSPRQCLHRLLAEQPQALDGGPGSV--WLNELIWREFYRHLMTWYPALCKHQ 297 Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365 PFI WT+++ W ++ H QAW++G TG+PI+DAAMRQLN GWMHNRLRMITASFLVKDL Sbjct: 298 PFIRWTKRVAWQENPHYFQAWQKGETGYPIVDAAMRQLNATGWMHNRLRMITASFLVKDL 357 Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425 L+DW +GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG+RFD G FI Sbjct: 358 LIDWWLGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGERFDRDGEFI 417 Query: 426 RHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481 R WLP L ++P + IH P W +K + L+YP PIV+HK+A TL+ Y AA+K + Sbjct: 418 RQWLPALRDIPGKAIHEPWRWAEKAGVVLDYPRPIVEHKQARIATLSAYEAARKGA 473 >gi|205351986|ref|YP_002225787.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|205271767|emb|CAR36601.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|326627026|gb|EGE33369.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp. enterica serovar Gallinarum str. 9] Length = 473 Score = 518 bits (1334), Expect = e-145, Method: Composition-based stats. Identities = 251/476 (52%), Positives = 334/476 (70%), Gaps = 4/476 (0%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M HLVW R DLR+ DN AL AAC ++ A+V+A++I+TP QW+ H ++ RQ+ FI A L Sbjct: 1 MPTHLVWFRRDLRLQDNLALAAACRDASARVLALYISTPAQWQAHDMAPRQAAFISAQLN 60 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 +Q +L++KGI +H+ ++F+ SIE + + C Q V+ LFYN QYE NE +RD +EK Sbjct: 61 ALQTALAEKGIPLLFHEVADFNASIETVKNVCRQHDVSHLFYNYQYEFNERQRDAAVEKT 120 Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 L VIC+ FDDSV+L PG+++ +MYKV+TPF+ A ++ L + +P P IR++G Sbjct: 121 LPS-VICEGFDDSVILAPGAVMTGNHEMYKVFTPFKNAWLKRLKEDIPPCVPAPKIRVSG 179 Query: 187 PVTPSNIPRFFDYPFQAIDP-MFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245 ++ P +YP QA D +FP+ E + LR+FC + Y +RD PA+ GTS+L Sbjct: 180 ALSTPLTPVSLNYPQQAFDAALFPVEENAVIAQLRQFCAQGADEYALRRDFPAVDGTSRL 239 Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305 S L+ G LSPRQC +RL E L WLNELIWREFYRHLM +YP++C + Sbjct: 240 SASLATGGLSPRQCLHRLLAEQPQALDGGPGSV--WLNELIWREFYRHLMTWYPALCKHQ 297 Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365 PFI WT+++ W ++ H QAW++G TG+PI+DAAMRQLN GWMHNRLRMITASFLVKDL Sbjct: 298 PFIRWTKRVAWQENPHYFQAWQKGETGYPIVDAAMRQLNATGWMHNRLRMITASFLVKDL 357 Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425 L+DWR+GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG+RFD G FI Sbjct: 358 LIDWRLGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGERFDRDGEFI 417 Query: 426 RHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481 R WLP L ++P + IH P W +K + L+YP PIV+HK+A TL+ Y AA+K + Sbjct: 418 RQWLPALRDIPGRAIHEPWRWAEKAGVVLDYPRPIVEHKQARISTLSAYEAARKGA 473 >gi|224582537|ref|YP_002636335.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|224467064|gb|ACN44894.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|322713765|gb|EFZ05336.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp. enterica serovar Choleraesuis str. A50] Length = 473 Score = 518 bits (1333), Expect = e-144, Method: Composition-based stats. Identities = 251/476 (52%), Positives = 336/476 (70%), Gaps = 4/476 (0%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M HLVW R DLR+ DN AL AAC ++ A+V+A++I+TP QW+ H ++ RQ+ FI A L Sbjct: 1 MPTHLVWFRRDLRLQDNLALAAACRDASARVLALYISTPAQWQAHDMAPRQAAFISAQLN 60 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 +Q +L++KGI +H+ ++F+ SIE + ++C Q V+ LFYN QY+ NE +RD +EK Sbjct: 61 ALQAALAEKGIPLLFHEVADFNASIETVKNFCRQHDVSHLFYNYQYQFNERQRDAAVEKT 120 Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 L VIC+ FDDSV+L PG+++ +MYKV+TPF+ A ++ L + +P P IR++G Sbjct: 121 LPS-VICEGFDDSVILAPGAVMTGNHEMYKVFTPFKNAWLKRLKEDIPPCVPAPKIRVSG 179 Query: 187 PVTPSNIPRFFDYPFQAIDP-MFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245 ++ P +YP QA D +FP+ E + LR+FC + Y +RD PA+ GTS+L Sbjct: 180 ALSTPLTPVSLNYPQQAFDAALFPVEENAVIAQLRQFCAQGADEYALRRDFPAVDGTSRL 239 Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305 S L+ G LSPRQC +RL E L WLNELIWREFYRHLM +YP++C + Sbjct: 240 SASLATGGLSPRQCLHRLLAEQPQALDGGPGSV--WLNELIWREFYRHLMTWYPALCKHQ 297 Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365 PFI WT+++ W ++SH QAW++G TG+PI+DAAMRQLN GWMHNRLRMITASFLVKDL Sbjct: 298 PFIRWTKRVAWQENSHYFQAWQKGETGYPIVDAAMRQLNATGWMHNRLRMITASFLVKDL 357 Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425 L+DWR+GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG+RFD G FI Sbjct: 358 LIDWRLGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGERFDRDGEFI 417 Query: 426 RHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481 R WLP L ++P + IH P W +K + L+YP PIV+HK+A TL+ Y AA+K + Sbjct: 418 RQWLPALRDIPGKAIHEPWRWAEKAGVVLDYPRPIVEHKQARIATLSAYEAARKGA 473 >gi|308186057|ref|YP_003930188.1| Deoxyribodipyrimidine photolyase [Pantoea vagans C9-1] gi|308056567|gb|ADO08739.1| Deoxyribodipyrimidine photolyase [Pantoea vagans C9-1] Length = 474 Score = 517 bits (1332), Expect = e-144, Method: Composition-based stats. Identities = 277/477 (58%), Positives = 345/477 (72%), Gaps = 5/477 (1%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M+ HLVWLRNDLRI DN AL+AAC +S AKVIA+F+ATPEQW+QH +S RQ+ FI+ASL+ Sbjct: 1 MTTHLVWLRNDLRINDNLALHAACRDSKAKVIALFLATPEQWQQHDMSPRQAAFIHASLV 60 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 +VQ +L+++GI Y C+ F DSI+ L +C + +V +LFYN QYE+NE +RD EKR Sbjct: 61 EVQNALAERGIALHYQACNAFSDSIDALAEFCDKHQVDQLFYNYQYEVNERQRDAEAEKR 120 Query: 127 LQH-RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185 L VIC+ FDDS+LLPPGS+ + MYKV+TPF KA ++ L Q+ +P P R Sbjct: 121 LDDTGVICQGFDDSLLLPPGSVQSGDRSMYKVFTPFSKAFVRRLQQSLPECVPAPKPRDG 180 Query: 186 GPVTPSNIPRFFDYPFQAIDP-MFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244 P+ + IP FD P +A D +FP GE AL LR F + + Y +RD+PA+ TS+ Sbjct: 181 APLKTTPIP-AFDCPTEAFDEDLFPAGEAAALKRLRHFATQPIIDYPAKRDLPALDATSR 239 Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304 LS YLS GVLSPRQC +R+ E D L S AF+WLNELIWREFYRHL+ YP++C Sbjct: 240 LSVYLSTGVLSPRQCLHRVLHEHPDAL--DNSRAFTWLNELIWREFYRHLLVAYPALCRH 297 Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364 KPFI WT +EW ++ AWK G TG+PI+DAAMRQ+ +GWMHNRLRMITASFLVKD Sbjct: 298 KPFIDWTRNVEWQREDAHFDAWKAGKTGYPIVDAAMRQMKALGWMHNRLRMITASFLVKD 357 Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424 LL+DWR GE YFM QL+DGDLA+NNGGWQWAASTG DS PYFRIFNPT QG+RFD QG F Sbjct: 358 LLIDWREGERYFMQQLIDGDLAANNGGWQWAASTGTDSAPYFRIFNPTTQGERFDEQGEF 417 Query: 425 IRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481 IRH+LPEL +VP +IH PH W +KN+ L+YP PIVDHK A TL+ + AK + Sbjct: 418 IRHYLPELADVPDSHIHQPHVWAEKNNRKLDYPAPIVDHKAARKKTLDAFERAKSAA 474 >gi|311280415|ref|YP_003942646.1| Deoxyribodipyrimidine photo-lyase [Enterobacter cloacae SCF1] gi|308749610|gb|ADO49362.1| Deoxyribodipyrimidine photo-lyase [Enterobacter cloacae SCF1] Length = 471 Score = 517 bits (1331), Expect = e-144, Method: Composition-based stats. Identities = 252/474 (53%), Positives = 332/474 (70%), Gaps = 5/474 (1%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M+ HLVW R DLR+ DN AL AAC +S AKV+A+FIATP QWRQH ++ RQ+ +I A L Sbjct: 1 MTTHLVWFRADLRLHDNLALAAACRDSYAKVLALFIATPGQWRQHRMAPRQAAYIQAQLN 60 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 +Q++L+ KGI + +F S + + C + +V+ L+YN QYE+NE RRD +EK Sbjct: 61 DLQRNLADKGIPLLLREAEDFAASAQVIRQVCNEHKVSSLYYNYQYELNERRRDARVEKA 120 Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 L+ V+C+ FDDSV+L PGS++ QMYKV+TPF+ A ++ L + + P++R G Sbjct: 121 LKD-VLCQGFDDSVMLAPGSVMTGDRQMYKVFTPFKNAYLKRLKEGLPECVRAPSVREEG 179 Query: 187 PVTPSNIPRFFDYPFQAIDP-MFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245 + + +YP DP +FP E++A+ LR+FC+++ Y ++RD PA++GTS+L Sbjct: 180 AIKVCQPLKL-NYPQTPFDPDLFPADEKSAIARLRQFCQQQAAEYEQKRDFPAMEGTSRL 238 Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305 S L++GVLSPRQC RL E L WLNELIWREFYRHLM F+P +C K Sbjct: 239 SCCLTVGVLSPRQCLRRLLAECSGALEGGAGSV--WLNELIWREFYRHLMTFHPELCRFK 296 Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365 PFI WT+ ++W +D L AW++G TG+PI+DAAMRQLN GWMHNRLRMI ASFLVKDL Sbjct: 297 PFIKWTDNVKWCEDHTRLNAWQRGQTGYPIVDAAMRQLNDTGWMHNRLRMIVASFLVKDL 356 Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425 L+DWR GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG++FD QG FI Sbjct: 357 LIDWREGERYFMSQLVDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGEKFDKQGEFI 416 Query: 426 RHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479 R WLPEL +VP + +H+P W DK +++YP PIVDH +A TL Y AA+K Sbjct: 417 RRWLPELKDVPDKALHSPWQWADKEGGTIDYPRPIVDHPQARLETLAAYEAARK 470 >gi|317047331|ref|YP_004114979.1| deoxyribodipyrimidine photo-lyase [Pantoea sp. At-9b] gi|316948948|gb|ADU68423.1| Deoxyribodipyrimidine photo-lyase [Pantoea sp. At-9b] Length = 475 Score = 516 bits (1329), Expect = e-144, Method: Composition-based stats. Identities = 264/477 (55%), Positives = 332/477 (69%), Gaps = 4/477 (0%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M+ HLVWLRNDLRI DN AL+AAC + A+V+A+FIATP QW+QH ++ +Q+ FIY SL Sbjct: 1 MTTHLVWLRNDLRINDNSALHAACRDPGARVLALFIATPGQWQQHHMAPKQAAFIYQSLC 60 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 +Q +L+++GI Y QC +F S+E L +C QQ+V +LFYN QYEINE +RD EKR Sbjct: 61 LLQAALAERGIPLHYQQCDDFAASLEVLADFCQQQQVDQLFYNYQYEINERQRDAAAEKR 120 Query: 127 LQ-HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185 L VIC+ FDDS+LL PGS+ M+KV+TPF KA ++ L Q P R Sbjct: 121 LDDQGVICQGFDDSLLLAPGSVQTGNHTMFKVFTPFSKAFVRRLHQGLPECHMAPRARQG 180 Query: 186 GPVTPSNIPRFFDYPFQAID-PMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244 P+ FDYP + D +FP GE+ AL LR F ++ V Y +RD PA+ GTS+ Sbjct: 181 APINVEKKIPPFDYPMEDFDVTLFPAGEEAALQQLRHFAQQSVVDYAAERDKPAVDGTSR 240 Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304 LS YL+ GVLSPRQC +R+ ++ D L AF WLNELIWREFYRHLM +P++C Sbjct: 241 LSVYLATGVLSPRQCLHRILKQHPDALDGGL--AFVWLNELIWREFYRHLMVAFPALCKH 298 Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364 +PF+ WT + W K+ L AW+QG TG+PI+DAAMRQLN +GWMHNRLRMI A FLVKD Sbjct: 299 QPFVGWTRHVRWQKNQRHLTAWQQGKTGYPIVDAAMRQLNALGWMHNRLRMIVACFLVKD 358 Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424 LL+DW GE YFM QL+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG+RFDPQG F Sbjct: 359 LLIDWHDGERYFMQQLMDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGERFDPQGAF 418 Query: 425 IRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481 IR WLPEL VP +IH PH W KN+++L YP PIV+HK A TL+ + A+ + Sbjct: 419 IRQWLPELAVVPDAHIHQPHVWAQKNNMTLAYPAPIVEHKDARKKTLDAFERARSAA 475 >gi|304395693|ref|ZP_07377576.1| Deoxyribodipyrimidine photo-lyase [Pantoea sp. aB] gi|304356987|gb|EFM21351.1| Deoxyribodipyrimidine photo-lyase [Pantoea sp. aB] Length = 474 Score = 515 bits (1327), Expect = e-144, Method: Composition-based stats. Identities = 274/477 (57%), Positives = 345/477 (72%), Gaps = 5/477 (1%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M+ HLVWLRNDLRI DN AL+AAC +SDAKVIA++++TPEQW+QH +S +Q+ FI+ASLL Sbjct: 1 MTTHLVWLRNDLRINDNLALHAACRDSDAKVIALYLSTPEQWQQHDMSPKQAAFIHASLL 60 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 +VQ +L+++GI Y C F DSI+ L +C +Q+V +LFYN QYE+NE +RD EKR Sbjct: 61 EVQSALAERGIPLHYQACHAFSDSIDALAEFCEKQKVDQLFYNYQYEVNERQRDARAEKR 120 Query: 127 LQH-RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185 L VIC+ FDDS+LLPPGS+ + MYKV+TPF KA ++ L Q+ +P P R Sbjct: 121 LDDAGVICQGFDDSLLLPPGSVQSGDRSMYKVFTPFSKAFVRRLQQSLPECVPAPKPREG 180 Query: 186 GPVTPSNIPRFFDYPFQAIDP-MFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244 P+ + IP FDYP +A D +FP GE AL LR F + V Y +RD+PA+ TS+ Sbjct: 181 SPLKVTPIP-AFDYPTKAFDEDLFPAGEAAALKRLRHFATKPVIDYPAKRDLPALDATSR 239 Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304 LS YL+ GVLSPRQC +R+ E D L S AF+WLNELIWREFYRHL+ YP++C Sbjct: 240 LSVYLATGVLSPRQCLHRVLHEHPDAL--DNSRAFTWLNELIWREFYRHLLVAYPALCRH 297 Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364 +PFI WT +EW ++ AWK G TG+PI+DAAMRQ+ +GWMHNRLRMITASFLVKD Sbjct: 298 QPFIDWTRNVEWQRNDAHFDAWKAGRTGYPIVDAAMRQMKALGWMHNRLRMITASFLVKD 357 Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424 LL+DWR GE YFM QL+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG+RFD +G F Sbjct: 358 LLIDWREGERYFMQQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGERFDEKGDF 417 Query: 425 IRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481 IRH+LPEL +VP IH PH W +K+ L+YP PIVDHK A TL+ + AK + Sbjct: 418 IRHYLPELADVPDSDIHQPHVWAEKHHKKLDYPAPIVDHKAARKKTLDAFERAKSAA 474 >gi|238793873|ref|ZP_04637493.1| Deoxyribodipyrimidine photo-lyase [Yersinia intermedia ATCC 29909] gi|238726776|gb|EEQ18310.1| Deoxyribodipyrimidine photo-lyase [Yersinia intermedia ATCC 29909] Length = 485 Score = 514 bits (1325), Expect = e-143, Method: Composition-based stats. Identities = 284/482 (58%), Positives = 344/482 (71%), Gaps = 8/482 (1%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M+ HL+W RNDLRITDN AL+AAC + A VIA+FIATP QW H ++ RQ+ F+ +L Sbjct: 1 MATHLIWFRNDLRITDNLALHAACQDPQATVIALFIATPAQWAAHDMAPRQAAFLLQNLQ 60 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 Q+Q +L+ +GI YHQC +F DSI WLD +C QQ+V LF+N+QYE+NE RD L R Sbjct: 61 QLQHALAIRGIPLHYHQCDDFQDSIIWLDDFCQQQQVDALFFNQQYELNEQLRDGALVTR 120 Query: 127 LQHR------VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVP 180 L HR + C FDDSVLLPPGS+L +MYKV+TPFR+A IQ L+ ++ R +P P Sbjct: 121 LNHRQGAGHTITCHRFDDSVLLPPGSVLTGNNEMYKVFTPFRRAFIQRLMMSECRCVPAP 180 Query: 181 AIRLTGPVTPSNIPRFFDYPFQAID-PMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAI 239 IR + V P + FDYP Q +D +FP GE+ AL LR FC+E+V Y QRD+PA+ Sbjct: 181 KIRDSVAVMPLPL-LPFDYPQQPVDNQLFPAGEEAALQRLRSFCREQVQDYQLQRDLPAV 239 Query: 240 QGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYP 299 GTS LSPYL++GVLSPRQC+NRL E LL GAF+WLNELIWREFYRHL+ YP Sbjct: 240 AGTSCLSPYLALGVLSPRQCFNRLLAECPALLENTDGGAFTWLNELIWREFYRHLLVAYP 299 Query: 300 SVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITAS 359 +C +PFI WT+ + WN L AW+QG TG+PI+DAAMRQLN GWMHNRLRMI+AS Sbjct: 300 RLCRHRPFIDWTDGVIWNHSEQQLIAWQQGRTGYPIVDAAMRQLNETGWMHNRLRMISAS 359 Query: 360 FLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFD 419 FLVKDLL+DWR GE YFMSQLLDGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG+RFD Sbjct: 360 FLVKDLLIDWRHGERYFMSQLLDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGERFD 419 Query: 420 PQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479 G FIR WLPEL VP IH P W + L+YPLP+VDHK A TL + AAK+ Sbjct: 420 SNGAFIRRWLPELAGVPDSDIHQPWRWAQRQQQHLDYPLPLVDHKLARLATLAAFEAAKR 479 Query: 480 QS 481 Sbjct: 480 DG 481 >gi|261341301|ref|ZP_05969159.1| deoxyribodipyrimidine photolyase [Enterobacter cancerogenus ATCC 35316] gi|288316605|gb|EFC55543.1| deoxyribodipyrimidine photolyase [Enterobacter cancerogenus ATCC 35316] Length = 470 Score = 514 bits (1324), Expect = e-143, Method: Composition-based stats. Identities = 262/475 (55%), Positives = 333/475 (70%), Gaps = 6/475 (1%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M HLVW R DLR+ DN AL AAC DA+V+A+FIATPEQW+QH ++ RQ+ ++ A L Sbjct: 1 MPTHLVWFRADLRVHDNIALAAACRAKDARVLALFIATPEQWQQHDMAPRQAAYLCAHLN 60 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 ++Q+SL +KGI Y + S+F ++ + + C + VT LFYN QYE NE +RD+ LE R Sbjct: 61 ELQRSLGEKGIPLIYKEVSDFSAQLQAVQAICDEHDVTHLFYNYQYEFNEQQRDRQLENR 120 Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 L V+C+ FDDSV+LPPGS++ +MYKV+TPF+ A I+ L +A + PA R G Sbjct: 121 L-DTVVCQGFDDSVMLPPGSVMTGNHEMYKVFTPFKNAFIKRLKEALPECVAAPAAR--G 177 Query: 187 PVTPSNIPRFFDYPFQAID-PMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245 FDYP QA D +FP E+ A+ LR FCK+ Y QRD PA++GTS+L Sbjct: 178 EPLTDLPALTFDYPQQAFDETLFPADEKAAITQLRHFCKQGAAEYESQRDFPAVEGTSRL 237 Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305 S L++GVLSPRQC +RL E L WLNEL WREFYRHLM ++P +C + Sbjct: 238 SACLALGVLSPRQCLHRLLAEQPQALDGAAGAV--WLNELTWREFYRHLMTYHPDLCKHR 295 Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365 PFI WTE ++W ++ L+AW+ G TG+PI+DAAMRQLN GWMHNRLRMITASFLVKDL Sbjct: 296 PFIRWTENVKWQQNDDRLRAWQNGTTGYPIVDAAMRQLNATGWMHNRLRMITASFLVKDL 355 Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425 L+DWR+GE YF+SQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG+RFD G FI Sbjct: 356 LIDWRVGERYFISQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGQRFDADGEFI 415 Query: 426 RHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQ 480 RHWLPELN VP + IH P +W DK ++L+YP P+VDHK+A TL Y AA+ Sbjct: 416 RHWLPELNEVPAKAIHEPWTWADKQGVTLDYPRPLVDHKQARVATLAAYEAARNA 470 >gi|146310870|ref|YP_001175944.1| deoxyribodipyrimidine photolyase [Enterobacter sp. 638] gi|145317746|gb|ABP59893.1| deoxyribodipyrimidine photo-lyase type I [Enterobacter sp. 638] Length = 470 Score = 512 bits (1319), Expect = e-143, Method: Composition-based stats. Identities = 255/474 (53%), Positives = 325/474 (68%), Gaps = 6/474 (1%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M+ HLVW R DLR+ DN AL AAC + A+V+AVFIATP+QWRQH ++ RQ+ ++ A L Sbjct: 1 MTTHLVWFRADLRLHDNIALAAACRSQHARVLAVFIATPDQWRQHDMAPRQAAYLRAHLN 60 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 +Q+ L+++GI Y + S+F + C Q VT LFYN QYE NE +RD+ LEK Sbjct: 61 GLQQGLAERGIPLIYEEVSDFAAQSAKVQQLCQQHDVTHLFYNYQYEFNEQQRDRQLEKM 120 Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 L V+C+ FDDSV+LPPGS++ +MYKV+TPF+ A ++ L + + PA+R Sbjct: 121 L-DGVVCQGFDDSVMLPPGSVMTGNHEMYKVFTPFKNAYVKRLKEGLPECVAAPAVREQK 179 Query: 187 PVTPSNIPRFFDYPFQAIDP-MFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245 P + F+YP Q D +FP E+ A+ LR FC+ Y +RD P+I GTS+L Sbjct: 180 --LPPSAEIEFNYPQQDFDAELFPASEKAAIAQLRHFCQHGAGEYEARRDFPSIDGTSRL 237 Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305 S L++GVLSPRQC +RL E L + WLNELIWREFYRHLM ++P +C + Sbjct: 238 SACLALGVLSPRQCLHRLLAEQPRALDGGEGSV--WLNELIWREFYRHLMTYHPDLCKHR 295 Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365 PFI WT+ ++W D LLQAW+ G TG+PI+DAAMRQLN GWMHNRLRMI ASFLVKDL Sbjct: 296 PFIRWTDNVQWQHDDVLLQAWQDGKTGYPIVDAAMRQLNETGWMHNRLRMIVASFLVKDL 355 Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425 L+DWR GE YFM+QL+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG+RFD G FI Sbjct: 356 LIDWRAGERYFMAQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGQRFDATGEFI 415 Query: 426 RHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479 R WLP L VP + +H P W DK ++L+YP PIVDHK+A TL Y AA+K Sbjct: 416 RKWLPSLRGVPIKSLHEPWVWADKTGVTLDYPRPIVDHKQARVATLAAYEAARK 469 >gi|156934798|ref|YP_001438714.1| deoxyribodipyrimidine photolyase [Cronobacter sakazakii ATCC BAA-894] gi|156533052|gb|ABU77878.1| hypothetical protein ESA_02638 [Cronobacter sakazakii ATCC BAA-894] Length = 473 Score = 512 bits (1318), Expect = e-143, Method: Composition-based stats. Identities = 256/475 (53%), Positives = 336/475 (70%), Gaps = 3/475 (0%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M+ HLVW R DLR+ DN AL AAC + DA+VI +FIATP+QWR H ++ RQ+ FI+ +L Sbjct: 1 MTTHLVWFRADLRVNDNLALAAACRDPDARVIGLFIATPQQWRDHTLAPRQAAFIHQNLE 60 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 +Q++L+++GI + +F +++ L ++C +Q+V+ LFYN QYE+NE RRD +E+R Sbjct: 61 ALQQALAKRGIALFTREVPDFAAAVDALAAFCDEQQVSALFYNYQYELNEARRDAAVERR 120 Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 L+ RV C+ FDDSV+LPPGS++ +MYKV+TP+ +A ++ L + + P R G Sbjct: 121 LEGRVACQGFDDSVMLPPGSVVTGNGEMYKVFTPYSRAFLRRLGEGLPACVSAPKPRHGG 180 Query: 187 PVTPSNIPRFFDYPFQAIDPM-FPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245 +T FDYP + D + FP GE+ AL LR+FC+ Y E+RD PAI+GTS L Sbjct: 181 AITDVPGLAPFDYPCETPDALLFPAGEEAALKRLREFCQTAAGDYPEKRDFPAIRGTSLL 240 Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305 S YL+IGVLSPRQC +RL E L WLNELIWREFYRHL+ +P +C + Sbjct: 241 SAYLAIGVLSPRQCLHRLLTEHPRALEGGSGAV--WLNELIWREFYRHLIVAWPHLCRHQ 298 Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365 PFI WT ++ W ++ QAW +G TG+PI+DAAMRQ+N GWMHNRLRMITASFLVKDL Sbjct: 299 PFIDWTARVAWQQNDAHFQAWCEGNTGYPIVDAAMRQMNATGWMHNRLRMITASFLVKDL 358 Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425 LVDWR GE YFMSQL+DGD A+NNGGWQWAASTG D+ PYFRIFNPT QG+RFD +G FI Sbjct: 359 LVDWRRGERYFMSQLIDGDFAANNGGWQWAASTGTDAAPYFRIFNPTTQGQRFDAEGEFI 418 Query: 426 RHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQ 480 R W+PEL+++P + +H PH W KN +L YP PIVDHK+A TL Y AA+K+ Sbjct: 419 RRWVPELSHIPGKAVHEPHLWAKKNGKALRYPQPIVDHKQARVATLAAYEAARKE 473 >gi|296103357|ref|YP_003613503.1| deoxyribodipyrimidine photolyase [Enterobacter cloacae subsp. cloacae ATCC 13047] gi|295057816|gb|ADF62554.1| deoxyribodipyrimidine photolyase [Enterobacter cloacae subsp. cloacae ATCC 13047] Length = 470 Score = 507 bits (1305), Expect = e-141, Method: Composition-based stats. Identities = 259/475 (54%), Positives = 331/475 (69%), Gaps = 6/475 (1%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M HLVW R DLR+ DN AL AAC + A+V+A+FIATP QW+QH ++ RQ+ ++ + L Sbjct: 1 MPTHLVWFRADLRLHDNIALAAACRSEHARVLALFIATPGQWQQHDMAPRQAAYLCSHLN 60 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 +Q+SL++KGI Y + S+F + + C Q VT LFYN QYE NE +RD+ LE+ Sbjct: 61 ALQRSLAEKGIPLIYKEVSDFTAQLSAVQEVCQQNDVTHLFYNYQYEFNEQQRDRELERI 120 Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 L V C+ FDDSV+L PGS++ +MYKV+TPF+ A I+ L +A + P+ R G Sbjct: 121 LGD-VECQGFDDSVMLAPGSVMTGNREMYKVFTPFKNAFIKRLKEALPECVAAPSAR--G 177 Query: 187 PVTPSNIPRFFDYPFQAID-PMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245 FDYP QA D +FP E+ A+ LR+FCK Y +RD PAI+GTS+L Sbjct: 178 ECVNDLPELTFDYPQQAYDHSLFPADEKAAIAQLRQFCKTGAAAYEARRDFPAIEGTSRL 237 Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305 S L++GVLSPRQC +RL E L WLNELIWREFYRHLM ++P +C + Sbjct: 238 SACLALGVLSPRQCLHRLLAEQPQALEGGAGSV--WLNELIWREFYRHLMTYHPELCKHR 295 Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365 PFI WTE ++W ++ LLQAW++G TG+PI+DAAMRQLN GWMHNRLRMITASFLVKDL Sbjct: 296 PFIRWTENVQWQQNEMLLQAWQKGETGYPIVDAAMRQLNETGWMHNRLRMITASFLVKDL 355 Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425 L+DWR+GE YF+SQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG++FD GTFI Sbjct: 356 LIDWRVGERYFISQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGQKFDADGTFI 415 Query: 426 RHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQ 480 RHWLP L VP + IH P +W DK ++L+YP PIV+HK+A TL Y AA+K Sbjct: 416 RHWLPALKAVPAKAIHDPWAWADKQGVTLDYPRPIVEHKQARVATLAAYEAARKA 470 >gi|288936505|ref|YP_003440564.1| deoxyribodipyrimidine photo-lyase [Klebsiella variicola At-22] gi|288891214|gb|ADC59532.1| Deoxyribodipyrimidine photo-lyase [Klebsiella variicola At-22] Length = 480 Score = 507 bits (1305), Expect = e-141, Method: Composition-based stats. Identities = 255/474 (53%), Positives = 325/474 (68%), Gaps = 5/474 (1%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M+ HLVWLR DLRI DN AL AAC + A+V+A++IATP QWR+H ++ RQ+ FI + L Sbjct: 1 MATHLVWLRTDLRIHDNLALAAACRDPQAQVLALYIATPGQWREHHLAPRQAAFIVSHLH 60 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 + +L+++GI + +F S+E L +C Q +V+ LFYN QYE NE +RD +E Sbjct: 61 SLHTALAERGIPLWVEEAGDFTASVERLAHFCQQHQVSHLFYNYQYEFNERQRDAAVENT 120 Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 L+ VIC+ FDDSVLLPPGS++ + +MYKV+TPF+ A I+ L + P R Sbjct: 121 LRD-VICQGFDDSVLLPPGSVMTGSGEMYKVFTPFKNAFIRRLRDGLPACVAAPKPRQAP 179 Query: 187 PVTPSNIPRFFDYPFQAIDPM-FPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245 +P +YP D + F E+ AL LR FC++ Y QRD PA++GTS+L Sbjct: 180 ARQAPPLPEL-NYPQTPFDGLLFAADEKTALARLRAFCQQPAAEYEGQRDFPAVEGTSRL 238 Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305 SP L+ GVLSPRQC +RL E L +WLNELIWREFYRHLM +YP +C G+ Sbjct: 239 SPCLATGVLSPRQCLHRLLTEHPAALDGGAGA--TWLNELIWREFYRHLMVYYPKLCKGR 296 Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365 PFI WT+K+ W +D LQAW++G TGFPI+DAAMRQLN GWMHNRLRMI ASFL KDL Sbjct: 297 PFIAWTDKVAWREDDAALQAWQRGETGFPIVDAAMRQLNATGWMHNRLRMIVASFLTKDL 356 Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425 +DWR GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG++FD QG F+ Sbjct: 357 RLDWRAGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGEKFDKQGVFM 416 Query: 426 RHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479 R WLPEL VP + +H P +W DK + L+YP PIVDHK+A TL + AA+K Sbjct: 417 RRWLPELAKVPEKALHQPWAWADKQGIKLDYPRPIVDHKQARQETLAAWEAARK 470 >gi|268592334|ref|ZP_06126555.1| deoxyribodipyrimidine photolyase [Providencia rettgeri DSM 1131] gi|291312119|gb|EFE52572.1| deoxyribodipyrimidine photolyase [Providencia rettgeri DSM 1131] Length = 480 Score = 506 bits (1304), Expect = e-141, Method: Composition-based stats. Identities = 266/473 (56%), Positives = 335/473 (70%), Gaps = 2/473 (0%) Query: 10 HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69 HL+W RNDLR+TDNKAL +AC + +AKVIA+F ATP+QW+QH ++ RQ FI+ +L+++Q Sbjct: 8 HLIWFRNDLRVTDNKALSSACADPNAKVIALFTATPKQWQQHDMAERQISFIHQNLVELQ 67 Query: 70 KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH 129 SL++ GI ++F D+ +W+ Y Q+ LF+NRQYE NE +RD+ L + H Sbjct: 68 NSLAELGIPLVCQTVNHFTDAAQWVLDYAKTQQADALFFNRQYEWNEKQRDEWLINQ-PH 126 Query: 130 RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189 + +FDD +LLPPGS+ +MY+VYTPFR+A + L D RSL P R Sbjct: 127 GLHIHAFDDYLLLPPGSVTTQKGEMYQVYTPFRRAFLTQLTVTDCRSLRAPEKRAAAINI 186 Query: 190 PSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYL 249 +P F P + FP GE++AL LR+FC KV Y RDIP+I GTSQLSPYL Sbjct: 187 DKALPLFPHQPIEDFQQ-FPAGEKSALTRLRQFCSLKVGDYQNDRDIPSIDGTSQLSPYL 245 Query: 250 SIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIP 309 ++GVLSPRQC+NRL+ E +L P SGAF+WLNEL+WREFY HL+ +P +C +PFI Sbjct: 246 AVGVLSPRQCFNRLQAENPQVLDHPDSGAFTWLNELVWREFYSHLLVAFPRLCRHQPFIQ 305 Query: 310 WTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDW 369 WT+ I WN S AWK G TG+PI+DAAMRQLNT GWMHNRLRMI ASFLVKDLL+DW Sbjct: 306 WTQHIHWNDSSTDFAAWKTGQTGYPIVDAAMRQLNTTGWMHNRLRMIVASFLVKDLLIDW 365 Query: 370 RIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWL 429 R GE+YFMSQLLDG LA+NNGGWQW+ASTG D+ P+FRIFNPT QGK+FD QG FIRHWL Sbjct: 366 RKGEKYFMSQLLDGSLAANNGGWQWSASTGVDASPWFRIFNPTTQGKKFDAQGAFIRHWL 425 Query: 430 PELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQSL 482 PEL VP +YIH PH W ++ +LNYP PIVDHK+A TL + A K+ SL Sbjct: 426 PELQQVPDKYIHTPHEWAVISNTALNYPEPIVDHKQARLATLAAFEAGKRNSL 478 >gi|206580444|ref|YP_002239663.1| deoxyribodipyrimidine photo-lyase [Klebsiella pneumoniae 342] gi|206569502|gb|ACI11278.1| deoxyribodipyrimidine photo-lyase [Klebsiella pneumoniae 342] Length = 480 Score = 506 bits (1302), Expect = e-141, Method: Composition-based stats. Identities = 255/474 (53%), Positives = 325/474 (68%), Gaps = 5/474 (1%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M+ HLVWLR DLRI DN AL AAC + A+V+A++IATP QWR+H ++ RQ+ FI + L Sbjct: 1 MATHLVWLRTDLRIHDNLALAAACRDPQAQVLALYIATPGQWREHHLAPRQAAFIASHLH 60 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 + +L+++GI + +F S+E L +C Q +V+ LFYN QYE NE +RD +E Sbjct: 61 SLHAALAERGIPLWVEEADDFTASVERLAHFCQQHQVSHLFYNYQYEFNERQRDAAVENT 120 Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 L+ VIC+ FDDSVLLPPGS++ + +MYKV+TPF+ A I+ L + P R Sbjct: 121 LRD-VICQGFDDSVLLPPGSVMTGSGEMYKVFTPFKNAFIRRLRDGLPACVAAPKPRQAP 179 Query: 187 PVTPSNIPRFFDYPFQAIDPM-FPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245 +P +YP D + F E+ AL LR FC++ Y QRD PA++GTS+L Sbjct: 180 ARQAPPLPEL-NYPQTPFDGLLFAADEKTALARLRAFCQQPAAEYEGQRDFPAVEGTSRL 238 Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305 SP L+ GVLSPRQC +RL E L +WLNELIWREFYRHLM +YP +C G+ Sbjct: 239 SPCLATGVLSPRQCLHRLLTEHPAALDGGAGA--TWLNELIWREFYRHLMVYYPKLCKGR 296 Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365 PFI WT+K+ W +D LQAW++G TGFPI+DAAMRQLN GWMHNRLRMI ASFL KDL Sbjct: 297 PFIAWTDKVAWREDDAALQAWQRGETGFPIVDAAMRQLNATGWMHNRLRMIVASFLTKDL 356 Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425 +DWR GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG++FD QG F+ Sbjct: 357 RLDWRAGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGEKFDKQGVFM 416 Query: 426 RHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479 R WLPEL VP + +H P +W DK + L+YP PIVDHK+A TL + AA+K Sbjct: 417 RRWLPELAKVPEKALHQPWAWADKQGIKLDYPRPIVDHKQARQETLAAWEAARK 470 >gi|152969283|ref|YP_001334392.1| deoxyribodipyrimidine photolyase [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|150954132|gb|ABR76162.1| deoxyribodipyrimidine photolyase (photoreactivation) [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] Length = 480 Score = 504 bits (1299), Expect = e-141, Method: Composition-based stats. Identities = 255/474 (53%), Positives = 322/474 (67%), Gaps = 5/474 (1%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M+ HLVWLR DLRI DN AL AAC + A+V+A++IATP QWR+H ++ RQ+ FI + L Sbjct: 1 MATHLVWLRTDLRIHDNLALAAACRDPQAQVLALYIATPGQWREHHLAPRQAAFIASHLQ 60 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 + +L+++GI + +F S+E L +C Q +V+ LFYN QYE NE +RD +E Sbjct: 61 SLHAALAERGIPLWVEEADDFTASVERLADFCQQHQVSHLFYNYQYEFNERQRDAAVENT 120 Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 L VIC+ FDDSVLLPPGS+L +MYKV+TPF+ A I+ L + P R Sbjct: 121 L-CDVICQGFDDSVLLPPGSVLTGGGEMYKVFTPFKNAFIRRLRDGLPACVAAPKPRQAP 179 Query: 187 PVTPSNIPRFFDYPFQAIDPM-FPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245 +P +YP D + F E+ AL LR FC++ Y QRD PA++GTS+L Sbjct: 180 ARQAPPLPEL-NYPQTPFDGLLFAADEKTALARLRAFCQQAAADYEGQRDFPAVEGTSRL 238 Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305 SP L+IGVLSPRQC +RL E L +WLNELIWREFYRHLM +YP +C G+ Sbjct: 239 SPCLAIGVLSPRQCLHRLLTEHPAALDGGAGA--TWLNELIWREFYRHLMVYYPKLCKGR 296 Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365 PF WT+K+ W + LQAW++G TGFPI+DAAMRQLN GWMHNRLRMI ASFL KDL Sbjct: 297 PFTAWTDKVAWRAEEASLQAWQRGETGFPIVDAAMRQLNATGWMHNRLRMIVASFLTKDL 356 Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425 +DWR GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG++FD QG FI Sbjct: 357 RLDWRAGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGEKFDKQGVFI 416 Query: 426 RHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479 R WLPEL VP + +H P +W DK ++L+Y PIVDHK+A TL + AA+K Sbjct: 417 RRWLPELAKVPEKALHQPWAWADKQGITLDYSRPIVDHKQARQETLAAWEAARK 470 >gi|238893748|ref|YP_002918482.1| deoxyribodipyrimidine photolyase [Klebsiella pneumoniae NTUH-K2044] gi|238546064|dbj|BAH62415.1| deoxyribodipyrimidine photolyase [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044] Length = 480 Score = 504 bits (1299), Expect = e-140, Method: Composition-based stats. Identities = 254/474 (53%), Positives = 322/474 (67%), Gaps = 5/474 (1%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M+ HLVWLR DLRI DN AL AAC + A+V+A++IATP QWR+H ++ RQ+ FI + L Sbjct: 1 MATHLVWLRTDLRIHDNLALAAACRDPQAQVLALYIATPGQWREHHLAPRQAAFIASHLQ 60 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 + +L+++GI + +F S+E L +C Q + + LFYN QYE NE +RD +E Sbjct: 61 SLHAALAERGIPLWVEEADDFTASVERLADFCQQHQASHLFYNYQYEFNERQRDAAVENT 120 Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 L+ VIC+ FDDSVLLPPGS+L +MYKV+TPF+ A I+ L + P R Sbjct: 121 LRD-VICQGFDDSVLLPPGSVLTGGGEMYKVFTPFKNAFIRRLRDGLPACVAAPKPRQAP 179 Query: 187 PVTPSNIPRFFDYPFQAIDPM-FPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245 +P +YP D + F E+ AL LR FC++ Y QRD PA++GTS+L Sbjct: 180 ARQAPPLPEL-NYPQTPFDGLLFAADEKTALARLRAFCQQAAADYEGQRDFPAVEGTSRL 238 Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305 SP L+IGVLSPRQC +RL E L +WLNELIWREFYRHLM +YP +C G+ Sbjct: 239 SPCLAIGVLSPRQCLHRLLTEHPAALDGGAGA--TWLNELIWREFYRHLMVYYPKLCKGR 296 Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365 PF WT+K+ W + LQAW++G TGFPI+DAAMRQLN GWMHNRLRMI ASFL KDL Sbjct: 297 PFTAWTDKVAWRAEEAALQAWQRGETGFPIVDAAMRQLNATGWMHNRLRMIVASFLTKDL 356 Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425 +DWR GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG++FD QG FI Sbjct: 357 RLDWRAGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGEKFDKQGVFI 416 Query: 426 RHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479 R WLPEL VP + +H P +W DK ++L+Y PIVDHK+A TL + AA+K Sbjct: 417 RRWLPELAKVPEKALHQPWAWADKQGITLDYSRPIVDHKQARQETLAAWEAARK 470 >gi|183596981|ref|ZP_02958474.1| hypothetical protein PROSTU_00210 [Providencia stuartii ATCC 25827] gi|188023634|gb|EDU61674.1| hypothetical protein PROSTU_00210 [Providencia stuartii ATCC 25827] Length = 483 Score = 503 bits (1296), Expect = e-140, Method: Composition-based stats. Identities = 265/477 (55%), Positives = 334/477 (70%) Query: 6 AMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASL 65 + HLVW RNDLR+TDNKAL +AC + DAKV+AVF ATPEQWR H +S+RQ F++ +L Sbjct: 4 KQACHLVWFRNDLRVTDNKALSSACADPDAKVLAVFTATPEQWRAHHLSSRQITFLHQNL 63 Query: 66 LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125 + ++ SL++ I +F + +W+ + QQ+V L++N QYE+NE RRD+ L Sbjct: 64 IALRDSLAKLSIPLFCQTTPDFLSAAQWVLDFAQQQQVDHLYFNHQYELNEHRRDEWLIH 123 Query: 126 RLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185 Q +FDD++LLPP S+ N +MY+VYTPFR+A I LV D RSLP P R Sbjct: 124 HPQRAFRVHAFDDALLLPPKSVTNQKGEMYQVYTPFRRAFISQLVTTDFRSLPAPQPRGE 183 Query: 186 GPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245 F + I P FP GE A LR+FC+ KV +Y + RDIP+I+GTS L Sbjct: 184 ALAIDDLSLPLFAHHAVDIVPHFPAGESAARQQLRQFCRLKVQHYQQHRDIPSIEGTSLL 243 Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305 SPYL+IGVLSPRQC NRL E+ L P SGAF+WLNELIWREFY HL+ +P +C + Sbjct: 244 SPYLAIGVLSPRQCLNRLLAEYPPLFDSPDSGAFTWLNELIWREFYHHLLVAFPRLCRHQ 303 Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365 PFI WT I+WN +AW+ G TG+PI+DAAMRQLNT GWMHNRLRMITASFLVKDL Sbjct: 304 PFIEWTNHIQWNSSDADFKAWQLGQTGYPIVDAAMRQLNTTGWMHNRLRMITASFLVKDL 363 Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425 L+DWR+GE+YFM QL+DG LA+NNGGWQW+ASTG D+ P+FRIFNPT QGK+FDPQG FI Sbjct: 364 LIDWRLGEQYFMQQLIDGTLAANNGGWQWSASTGTDAQPWFRIFNPTTQGKKFDPQGAFI 423 Query: 426 RHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQSL 482 R WLPEL +VP +YIH PH W + N ++L+YP PIVDHK+A TL + A K S+ Sbjct: 424 RQWLPELQSVPDKYIHTPHEWAEANHVTLDYPAPIVDHKQARLATLAAFEAGKSDSV 480 >gi|197287042|ref|YP_002152914.1| deoxyribodipyrimidine photolyase [Proteus mirabilis HI4320] gi|194684529|emb|CAR46324.1| deoxyribodipyrimidine photolyase [Proteus mirabilis HI4320] Length = 476 Score = 502 bits (1292), Expect = e-140, Method: Composition-based stats. Identities = 250/475 (52%), Positives = 312/475 (65%), Gaps = 1/475 (0%) Query: 6 AMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASL 65 + VHLVW R+DLR+TDNKAL+ AC N+ A+V A+F TP QW+ H ++ Q FI+ +L Sbjct: 3 SAPVHLVWFRHDLRVTDNKALFYACQNTQAQVHAIFTVTPAQWKAHHMALSQQAFIHDAL 62 Query: 66 LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125 L + +L++ I + D+ + + YC Q +VT LF+N QY +NE RDK + + Sbjct: 63 LNLSHALAKLNIPLTLIISDTYADAAQSIVDYCQQHQVTALFFNHQYALNEQNRDKKVME 122 Query: 126 RLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185 L H + D+V +PPG+++ +MYKV+TPFR A ++ + D SLP P IR Sbjct: 123 LLAHNTTVYCYHDNVFVPPGNVVTQQGEMYKVFTPFRTAFLRLFLSQDNASLPAPEIRAH 182 Query: 186 GPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245 F P + MFP EQ AL L++FC E+V +Y + RDIPAI GTSQL Sbjct: 183 QKAVSPLSAPLFALPISSTK-MFPASEQAALQRLKQFCYERVIHYAKWRDIPAIDGTSQL 241 Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305 SPYL+IG++S RQC+NRL + D L S F W NEL+WREFY+HL+ PS+ Sbjct: 242 SPYLAIGLVSVRQCFNRLYQTEPDFLENNHSSTFVWFNELVWREFYQHLIVANPSLSKQI 301 Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365 F PWTE I W D AW QG TGFPIIDAAMRQLN GWMHNRLRM+TASFLVKDL Sbjct: 302 AFQPWTENIRWRNDQTEFTAWTQGLTGFPIIDAAMRQLNQTGWMHNRLRMLTASFLVKDL 361 Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425 L+DWR GE YFMSQL+DGD ASNNGGWQWAASTG D+VPYFRIFNPT QG++FDP G FI Sbjct: 362 LIDWRWGENYFMSQLIDGDFASNNGGWQWAASTGTDAVPYFRIFNPTTQGRKFDPDGEFI 421 Query: 426 RHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQ 480 RHWLPEL +VP +YIH P W K L+YP PIVDH KA + Y AKK+ Sbjct: 422 RHWLPELADVPDRYIHTPSEWAIKTGHYLDYPQPIVDHAKARVTAIASYEEAKKR 476 >gi|227354710|ref|ZP_03839129.1| deoxyribodipyrimidine photolyase [Proteus mirabilis ATCC 29906] gi|227165220|gb|EEI50045.1| deoxyribodipyrimidine photolyase [Proteus mirabilis ATCC 29906] Length = 476 Score = 499 bits (1286), Expect = e-139, Method: Composition-based stats. Identities = 250/475 (52%), Positives = 312/475 (65%), Gaps = 1/475 (0%) Query: 6 AMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASL 65 + VHLVW R+DLR+TDNKAL+ AC N+ A+V A+F TP QW+ H ++ Q FI+ +L Sbjct: 3 SAPVHLVWFRHDLRVTDNKALFYACQNTQAQVHAIFTVTPAQWKAHHMALSQQAFIHDAL 62 Query: 66 LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125 L + +L++ I + D+ + + YC Q +VT LF+N QY +NE RDK + + Sbjct: 63 LNLSHALAKLNIPLTLIISDTYADAAQSIVDYCQQHQVTALFFNHQYALNEQNRDKKVME 122 Query: 126 RLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185 L H + D+V +PPG+++ +MYKV+TPFR A ++ + D SLP P IR Sbjct: 123 LLAHNTTVYCYHDNVFVPPGNVVTQQGEMYKVFTPFRTAFLRLFLSQDNASLPAPEIRAH 182 Query: 186 GPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245 F P + MFP EQ AL L++FC E+V +Y + RDIPAI GTSQL Sbjct: 183 QKTVSPLSAPLFALPISSTK-MFPASEQAALQRLKQFCYERVIHYAKWRDIPAIDGTSQL 241 Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305 SPYL+IG++S RQC+NRL + D L S AF W NEL+WREFY+HL+ PS+ Sbjct: 242 SPYLAIGLVSVRQCFNRLYQTEPDFLENNHSSAFVWFNELVWREFYQHLIVANPSLSKQI 301 Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365 F PWTE I W D AW QG TGFPIIDAAMRQLN GWMHNRLRM+TASFLVKDL Sbjct: 302 AFQPWTENIRWRNDQTEFTAWTQGLTGFPIIDAAMRQLNQTGWMHNRLRMLTASFLVKDL 361 Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425 L+DWR GE YFMSQL+DGD ASNNGGWQWAASTG D+VPYFRIFNPT QG++FDP G FI Sbjct: 362 LIDWRWGENYFMSQLIDGDFASNNGGWQWAASTGTDAVPYFRIFNPTTQGRKFDPDGEFI 421 Query: 426 RHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQ 480 RHWLPEL +VP + IH P W K L+YP PIVDH KA + Y AKK+ Sbjct: 422 RHWLPELADVPDRDIHTPSEWAIKTGHYLDYPQPIVDHAKARVTAIASYEEAKKR 476 >gi|260597109|ref|YP_003209680.1| deoxyribodipyrimidine photolyase [Cronobacter turicensis z3032] gi|260216286|emb|CBA29241.1| Deoxyribodipyrimidine photo-lyase [Cronobacter turicensis z3032] Length = 473 Score = 496 bits (1276), Expect = e-138, Method: Composition-based stats. Identities = 257/475 (54%), Positives = 333/475 (70%), Gaps = 3/475 (0%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M+ HLVW R DLR+ DN AL AAC + DA+VI +FIATP+QWR H ++ RQ+ FI+ +L Sbjct: 1 MTTHLVWFRADLRVNDNLALAAACRDPDARVIGLFIATPQQWRDHTLAPRQAAFIHQNLE 60 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 +Q++L+ +GI + +F +++ L ++C +Q+V LFYN QYE+NE RRD + +R Sbjct: 61 ALQQALATRGIALFTREAPDFAAAVDALAAFCDEQQVAALFYNYQYELNEARRDAAVARR 120 Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 L+ RV C+ FDDSV+LPPGS + +MYKV+TP+ +A I+ L + + P R G Sbjct: 121 LEGRVACQGFDDSVMLPPGSAVTGNGEMYKVFTPYSRAFIRRLGEGLPPCVSAPKPRAGG 180 Query: 187 PVTPSNIPRFFDYPFQAIDP-MFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245 +T + FDYP + D +FP GE+ AL LR FC+ Y E+RD PAI+GTS L Sbjct: 181 ALTDAPALAPFDYPCETPDGMLFPAGEEAALKRLRDFCRHDAGDYPEKRDFPAIRGTSLL 240 Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305 SPYL+IGVLSPRQC +RL E L WLNELIWREFYRHL+ +P +C + Sbjct: 241 SPYLAIGVLSPRQCLHRLLTEHPRALEGGSGAV--WLNELIWREFYRHLIVAWPHLCRHQ 298 Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365 PFI WT ++ W ++ QAW +G TG+PI+DAAMRQ+N GWMHNRLRMITASFLVKDL Sbjct: 299 PFIDWTARVAWQRNDAHFQAWCEGNTGYPIVDAAMRQMNATGWMHNRLRMITASFLVKDL 358 Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425 LVDWR GE YFMSQL+DGD A+NNGGWQWAASTG D+ PYFRIFNPT QG+RFD +G FI Sbjct: 359 LVDWRRGERYFMSQLIDGDFAANNGGWQWAASTGTDAAPYFRIFNPTTQGQRFDAEGEFI 418 Query: 426 RHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQ 480 R W+PEL+++P + +H PH W KN +L YP PIVDHK+A TL Y AA+K+ Sbjct: 419 RRWVPELSHIPGKAVHEPHVWAKKNGKALRYPQPIVDHKQARVATLAAYEAARKE 473 >gi|329998823|ref|ZP_08303226.1| deoxyribodipyrimidine photo-lyase [Klebsiella sp. MS 92-3] gi|328538550|gb|EGF64657.1| deoxyribodipyrimidine photo-lyase [Klebsiella sp. MS 92-3] Length = 461 Score = 492 bits (1268), Expect = e-137, Method: Composition-based stats. Identities = 251/465 (53%), Positives = 317/465 (68%), Gaps = 5/465 (1%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M+ HLVWLR DLRI DN AL AAC + A+V+A++IATP QWR+H ++ RQ+ FI + L Sbjct: 1 MATHLVWLRTDLRIHDNLALAAACRDPQAQVLALYIATPGQWREHHLAPRQAAFIASHLQ 60 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 + +L+++GI + +F S+E L +C Q +V+ LFYN QYE NE +RD +E Sbjct: 61 SLHAALAERGIPLWVEEADDFTASVERLADFCQQHQVSHLFYNYQYEFNERQRDAAVENT 120 Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 L+ VIC+ FDDSVLLPPGS+L +MYKV+TPF+ A I+ L + P R Sbjct: 121 LRD-VICQGFDDSVLLPPGSVLTGGGEMYKVFTPFKNAFIRRLRDGLPACVAAPKPRQAP 179 Query: 187 PVTPSNIPRFFDYPFQAIDPM-FPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245 +P +YP D + F E+ AL LR FC++ Y QRD PA++GTS+L Sbjct: 180 ARQAPPLPEL-NYPQTPFDGLLFAADEKTALARLRAFCQQAAADYEGQRDFPAVEGTSRL 238 Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305 SP L+IGVLSPRQC +RL E L +WLNELIWREFYRHLM +YP +C G+ Sbjct: 239 SPCLAIGVLSPRQCLHRLLTEHPAALDGGAGA--TWLNELIWREFYRHLMVYYPKLCKGR 296 Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365 PF WT+K+ W + LQAW++G TGFPI+DAAMRQLN GWMHNRLRMI ASFL KDL Sbjct: 297 PFTAWTDKVAWRAEEASLQAWQRGETGFPIVDAAMRQLNATGWMHNRLRMIVASFLTKDL 356 Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425 +DWR GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG++FD QG FI Sbjct: 357 RLDWRAGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGEKFDKQGVFI 416 Query: 426 RHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHT 470 R WLPEL VP + +H P +W DK ++L+Y PIVDHK+A T Sbjct: 417 RRWLPELAKVPEKALHQPWAWADKQGITLDYSRPIVDHKQARQET 461 >gi|237747870|ref|ZP_04578350.1| deoxyribodipyrimidine photolyase [Oxalobacter formigenes OXCC13] gi|229379232|gb|EEO29323.1| deoxyribodipyrimidine photolyase [Oxalobacter formigenes OXCC13] Length = 498 Score = 488 bits (1256), Expect = e-135, Method: Composition-based stats. Identities = 235/472 (49%), Positives = 319/472 (67%) Query: 10 HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69 HLVW R DLR+TDNKAL AAC + DA V A+F A QW +HG+S RQ F++ L ++ Sbjct: 12 HLVWFRQDLRLTDNKALAAACEDKDATVYALFTAPLSQWEEHGVSERQVAFMHRHLEKLS 71 Query: 70 KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH 129 + L + GI H C NFDD+ ++ +C ++++ +F+N QYE+NE RRD+ LE L Sbjct: 72 EGLERIGIPLVCHVCGNFDDAARFVIDFCRREQIDDVFFNNQYELNEQRRDRWLEDNLPQ 131 Query: 130 RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189 +DD +LLPPG+ N +MY+V+TPF++ ++ L AD SLP P RL Sbjct: 132 ETSLNRYDDCLLLPPGAANNRQGEMYRVFTPFKRTFLEKLGSADTGSLPQPERRLHVTRI 191 Query: 190 PSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYL 249 + FF Y + + GE+ A+ +L FC+EKV+ Y + RD P + GTS++S YL Sbjct: 192 KGSSSPFFPYEKVSFGAEYTPGEEAAIALLENFCREKVHDYDKTRDRPDLDGTSRVSAYL 251 Query: 250 SIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIP 309 +IGVLSPRQC N L E D + + K G WLNEL+WREFY HL+A +P +C +PF+ Sbjct: 252 AIGVLSPRQCLNALLAEVPDAIWQSKGGGAVWLNELVWREFYYHLIAAFPRLCRYEPFLE 311 Query: 310 WTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDW 369 WT++I WN + +AW +G TG+PI+DAAMR+L GWMHNRLRMI ASFLVKDLLVDW Sbjct: 312 WTDRIVWNANEADFRAWVEGRTGYPIVDAAMRELKETGWMHNRLRMIVASFLVKDLLVDW 371 Query: 370 RIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWL 429 R GE YFMSQL+DG+L +NNGGWQW+ASTG D++P+FRIFNP QG++FDP G ++R WL Sbjct: 372 RKGERYFMSQLIDGNLPANNGGWQWSASTGVDAMPWFRIFNPVTQGQKFDPAGHYVRRWL 431 Query: 430 PELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481 PEL +VP IH P W KN + L+YP P+VDH++A TLN + A ++++ Sbjct: 432 PELKDVPEGDIHTPQLWAKKNHVVLDYPDPVVDHRQAREKTLNAFNAVRQKA 483 >gi|297521407|ref|ZP_06939793.1| deoxyribodipyrimidine photolyase [Escherichia coli OP50] Length = 452 Score = 487 bits (1255), Expect = e-135, Method: Composition-based stats. Identities = 236/454 (51%), Positives = 314/454 (69%), Gaps = 5/454 (1%) Query: 29 ACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFD 88 AC NS A+V+A++IATP QW H +S RQ+ I A L +Q +L++KGI + + +F Sbjct: 2 ACRNSSARVLALYIATPRQWATHNMSPRQAELINAQLNGLQIALAEKGIPLLFREVDDFV 61 Query: 89 DSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHRVICKSFDDSVLLPPGSIL 148 S+E + C + VT LFYN QYE+NE RD +E+ L+ V+C+ FDDSV+LPPG+++ Sbjct: 62 ASVEIVKQVCAENSVTHLFYNYQYEVNERARDVEVERALR-NVVCEGFDDSVILPPGAVM 120 Query: 149 NHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDP-M 207 +MYKV+TPF+ A ++ L + + P +R +G + P+ +YP Q+ D Sbjct: 121 TGNHEMYKVFTPFKNAWLKRLREGMPECVAAPKVRSSGSIEPAPSITL-NYPRQSFDTAH 179 Query: 208 FPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEF 267 FP+ E+ A+ LR+FC+ Y +QRD PA++GTS+LS L+ G LSPRQC +RL E Sbjct: 180 FPVEEKAAIAQLRQFCQNGAGEYEQQRDFPAVEGTSRLSASLATGGLSPRQCLHRLLAEQ 239 Query: 268 VDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWK 327 L WL+ELIWREFYRHLM +YPS+C PFI WT++++W + LQAW+ Sbjct: 240 PQALDGGAGSV--WLSELIWREFYRHLMTYYPSLCKHCPFIAWTDRVQWQSNPAHLQAWQ 297 Query: 328 QGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLAS 387 +G TG+PI+DAAMRQLN+ GWMHNRLRMITASFLVKDLL+DWR GE YFMSQL+DGDLA+ Sbjct: 298 EGKTGYPIVDAAMRQLNSTGWMHNRLRMITASFLVKDLLIDWREGERYFMSQLIDGDLAA 357 Query: 388 NNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWL 447 NNGGWQWAASTG D+ PYFRIFNPT QG++FD +G FIR WLPEL +VP + +H P W Sbjct: 358 NNGGWQWAASTGTDAAPYFRIFNPTTQGEKFDREGEFIRRWLPELRDVPGKAVHEPWKWA 417 Query: 448 DKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481 K + L+YP PIVDHK+A TL Y A+K + Sbjct: 418 QKAGVMLDYPQPIVDHKEARLRTLAAYEEARKGA 451 >gi|330830812|ref|YP_004393764.1| deoxyribodipyrimidine photolyase [Aeromonas veronii B565] gi|328805948|gb|AEB51147.1| Deoxyribodipyrimidine photolyase [Aeromonas veronii B565] Length = 473 Score = 479 bits (1233), Expect = e-133, Method: Composition-based stats. Identities = 214/475 (45%), Positives = 289/475 (60%), Gaps = 6/475 (1%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 + LVW RNDLR+ DN AL AC D V A+FI +P QWRQH ++ + F+ A + ++ Sbjct: 1 MKLVWFRNDLRLADNPALRHACA-GDEPVAALFIISPTQWRQHKMAPIRQRFMLAQVDEL 59 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128 + L+ GI + F + L + C +Q VT+L+ N+ EI+E+RRD + L Sbjct: 60 GRELAALGIQLHLLRVETFAEVPAVLANLCREQGVTQLYANQAIEIDELRRDHAVSAALA 119 Query: 129 HR-VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIR---L 184 + V C F+ +LPPG +L + +M+KV+TPF +A +++L + P R L Sbjct: 120 EQAVSCHWFNGCCVLPPGRVLTGSGEMFKVFTPFSRAWLKSLDEEGFVIHRAPTPRGEPL 179 Query: 185 TGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244 +DP +P+GE AL L F ++ V Y E RD PAI GTS Sbjct: 180 PWQPLAERAWVDEALGELTVDPRWPVGEAEALRRLNIFLEQAVLDYGETRDFPAIAGTSV 239 Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304 LSPYL+ G++SPRQC L++ F WLNELIWREFYRHL+ P++ M Sbjct: 240 LSPYLAAGIISPRQCVAVLQQRLGYRPQSKAQPGFVWLNELIWREFYRHLLVLIPALSMN 299 Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364 +PF P T + W+ D AW +G TG+PI+DAAMR LNT GWMHNRLRMI ASFL KD Sbjct: 300 RPFKPETAALPWSWDPDAFAAWCEGRTGYPIVDAAMRCLNTTGWMHNRLRMIVASFLTKD 359 Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424 L + WR+GE+YFMS+L+DGDLA+NNGGWQWAA TG D+ PYFR+FNPT QG+RFDPQG F Sbjct: 360 LHIHWRLGEDYFMSRLIDGDLAANNGGWQWAAGTGADAAPYFRVFNPTTQGQRFDPQGEF 419 Query: 425 IRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479 IR W+ EL ++P Y+H PH WL +YP+P+VDH A + + + +K Sbjct: 420 IRTWVTELADIPPAYVHQPHDWLRLKGR-QDYPVPMVDHAVARVRAIEMFRSLEK 473 >gi|89073732|ref|ZP_01160246.1| deoxyribodipyrimidine photolyase [Photobacterium sp. SKA34] gi|89050507|gb|EAR55999.1| deoxyribodipyrimidine photolyase [Photobacterium sp. SKA34] Length = 489 Score = 479 bits (1233), Expect = e-133, Method: Composition-based stats. Identities = 217/475 (45%), Positives = 308/475 (64%), Gaps = 11/475 (2%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 ++W R+DLR+ DN AL A S +IA+FIATP QW QH ++A Q FI+ L +++ Sbjct: 12 IIWFRSDLRVVDNTALNHAIE-SGLPIIALFIATPMQWHQHNMAAVQVDFIHRRLQVLKQ 70 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130 L+++ I Q + ++F +S+ ++ C+ +F N+QY INE +RD + + L + Sbjct: 71 QLAKRNIPLQVIEVNDFSESVYLIEQVCIDYNAVHVFANKQYPINEHKRDNSVGELLAKK 130 Query: 131 -VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT---- 185 + FDD+ +L P +L +++KV+TPFR A I+ + + + + +T Sbjct: 131 SIKFSIFDDNYILQPEMVLTRDGELFKVFTPFRNAWIKRFSSSTCYPVTINSDIVTSGVV 190 Query: 186 -GPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244 ++ S+ + F+YP ++P+ E+ L FC+ K Y + RD PAI GTS Sbjct: 191 SKLLSDSSQIKAFNYPI-IDSVLWPVDEETIAQRLETFCETKAETYHQNRDFPAIDGTSC 249 Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKS-GAFSWLNELIWREFYRHLMAFYPSVCM 303 LSPYL+IG LS RQC ++L++ F + K GAF+WLNE++WREFY HL+ YP + Sbjct: 250 LSPYLAIGALSARQCLHQLQQYFPNAFEINKDDGAFTWLNEIVWREFYGHLLHRYPELSK 309 Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363 +PF +T+ ++W D LL+AW++G TGFPI+DA MRQL GWMHNRLRMITASFL K Sbjct: 310 HQPFQKFTQFVKWKDDEALLKAWQEGKTGFPIVDAGMRQLRATGWMHNRLRMITASFLTK 369 Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423 DLL DWR+GE++FM L+DGD +SNNGGWQWAASTG D+ PYFR+FNPT+QG+RFDP+G Sbjct: 370 DLLCDWRVGEQWFMQHLIDGDFSSNNGGWQWAASTGTDAQPYFRVFNPTLQGQRFDPKGD 429 Query: 424 FIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478 FIR W+ EL +VP +YIH PH W + SLNYPLPIVDHK+A + + AK Sbjct: 430 FIRTWVKELEHVPDKYIHTPHQWASEE--SLNYPLPIVDHKEARLIAIESFKQAK 482 >gi|117618175|ref|YP_855643.1| deoxyribodipyrimidine photolyase [Aeromonas hydrophila subsp. hydrophila ATCC 7966] gi|117559582|gb|ABK36530.1| deoxyribodipyrimidine photolyase [Aeromonas hydrophila subsp. hydrophila ATCC 7966] Length = 473 Score = 476 bits (1226), Expect = e-132, Method: Composition-based stats. Identities = 214/475 (45%), Positives = 285/475 (60%), Gaps = 6/475 (1%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 + L+W RNDLR+ DN AL AC D V A+FI +P QWRQH ++ + F+ A + + Sbjct: 1 MKLIWFRNDLRLADNPALRHACA-GDEPVAALFILSPSQWRQHKLAPIRQRFLLAQVDVL 59 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128 + L+ GI + F + L C + VT+L+ N+ EI+E+RRD+ + L Sbjct: 60 GRELAALGIPLHLLRVETFSEVPAALAELCRELGVTQLYANQAIEIDELRRDQAVSAALA 119 Query: 129 HR-VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG- 186 + V C + +LPPG +L + +M+KV+TPF +A ++ L + PA R Sbjct: 120 EQTVGCHWLNGCCVLPPGRVLTGSGEMFKVFTPFSRAWLKALDEDGFVIHRPPAPRGEPL 179 Query: 187 PVTPSNIPRFFD--YPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244 P P F D DP +P+GE A L F ++ V Y E RD PAI GTS Sbjct: 180 PWQPLAERHFVDAALGELTADPRWPVGEAEASRRLNDFLEQAVLDYGETRDFPAIAGTSV 239 Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304 LSPYL+ G++SPRQC L++ F WLNELIWREFYRHL+ P++ M Sbjct: 240 LSPYLAAGIISPRQCVAALQQRLGYRPQSKAQPGFVWLNELIWREFYRHLLVQIPTLSMN 299 Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364 +PF P T + W+ D AW +G TG+PI+DAAMR LN GWMHNRLRMI ASFL KD Sbjct: 300 RPFKPETAALPWSWDPDAFAAWCEGRTGYPIVDAAMRCLNATGWMHNRLRMIVASFLTKD 359 Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424 L + WR+GE+YFMS+L+DGDLA+NNGGWQWAA TG D+ PYFR+FNPT QG+RFDPQG F Sbjct: 360 LHIHWRLGEDYFMSRLIDGDLAANNGGWQWAAGTGADAAPYFRVFNPTTQGQRFDPQGEF 419 Query: 425 IRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479 IR W+ EL ++P Y+H PH WL +YP P+VDH A + + A +K Sbjct: 420 IRTWVSELADLPAAYLHQPHDWLRLKGRH-DYPAPMVDHAVARVRAIEMFRALEK 473 >gi|294637450|ref|ZP_06715740.1| deoxyribodipyrimidine photolyase [Edwardsiella tarda ATCC 23685] gi|291089391|gb|EFE21952.1| deoxyribodipyrimidine photolyase [Edwardsiella tarda ATCC 23685] Length = 477 Score = 476 bits (1225), Expect = e-132, Method: Composition-based stats. Identities = 243/473 (51%), Positives = 320/473 (67%), Gaps = 4/473 (0%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M+ H+VWLRNDLR+TDN+AL+AAC + DA+V+A+++ATP QW+ ++ RQ+ FI+ +L Sbjct: 1 MTTHVVWLRNDLRVTDNRALHAACADPDARVLALYVATPRQWQAQDMAPRQAQFIWQNLQ 60 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 ++ L+ + I +++ + + +C Q + T LF+NRQYE+NE RRD+ L Sbjct: 61 CLRLELAARHIALHGLSVADYAAQRQAVAHFCAQHQATALFFNRQYELNERRRDEALCAT 120 Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 L + C FDD++LLPPG++L A QM+KV+TPF+ A +Q L Q D LP P R Sbjct: 121 LS--IPCHGFDDALLLPPGAVLTAAGQMFKVFTPFKHAFLQALGQQDNAPLPAPTRRAYP 178 Query: 187 PVTPSNIPRFFDYPFQAID-PMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245 P +P FDYP +D +FP GE A L FC+ + Y +RD PA GTS L Sbjct: 179 CAPPPVLPT-FDYPAATVDATLFPAGEAAAQARLAHFCRTDLATYAVRRDFPAQAGTSLL 237 Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305 SPYL++GV+SPRQC L+ +D G +WLNELIWREFYRHL+ +P +C + Sbjct: 238 SPYLTLGVVSPRQCLAVLQSGMLDSPNAASGGGAAWLNELIWREFYRHLLVAWPDLCRHR 297 Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365 PF+PWT +I W D L+ W+QG TGFP+IDAAMRQLN GWMHNRLRM+TASFLVKDL Sbjct: 298 PFLPWTARIRWRDDEQGLRRWQQGMTGFPLIDAAMRQLNHCGWMHNRLRMLTASFLVKDL 357 Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425 L+DWR+GE YF+SQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG+R+D QG FI Sbjct: 358 LIDWRLGERYFLSQLIDGDLAANNGGWQWAASTGCDAAPYFRIFNPTTQGQRYDAQGQFI 417 Query: 426 RHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478 R WLP L +VP IH P W + L+YP P+VDH +A TL + A+ Sbjct: 418 RRWLPALKDVPDSEIHHPQRWALRQRRVLDYPDPMVDHARARQDTLLAFQRAR 470 >gi|330961741|gb|EGH62001.1| deoxyribodipyrimidine photolyase [Pseudomonas syringae pv. maculicola str. ES4326] Length = 481 Score = 474 bits (1219), Expect = e-131, Method: Composition-based stats. Identities = 195/472 (41%), Positives = 271/472 (57%), Gaps = 6/472 (1%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 + L+WLR+DLR+ DN AL AA +AV++ +P QWR H + + F +L+++ Sbjct: 1 MQLIWLRSDLRVHDNTALTAAMERG--PTLAVYLLSPAQWRSHDDADCKVDFWLRNLVEL 58 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128 + +L + + Q +D + E L + C Q +V L+ N +Y INE RRD ++K L+ Sbjct: 59 EAALGKLNVPLLIRQADTWDKAPEVLSTLCQQFKVEGLYLNEEYGINETRRDLAVQKMLE 118 Query: 129 HRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQ--ADLRSLPVPAIRLT 185 + S+ D +L PGSIL ++V+T F+K L + +R Sbjct: 119 EAGVQVNSYLDQLLFKPGSILTKTGNYFQVFTQFKKVCYTRLHEATHPVRMPAAQQALSI 178 Query: 186 GPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245 + + F P Q + ++P GE A + F E++ YY ++RD PA GTSQL Sbjct: 179 TSDPVPDQVKGFATPSQTLRALWPAGEGEAKRRMDAFADEQISYYKDERDFPAKPGTSQL 238 Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305 S YL+ GV+SPRQC + G +W+NEL+WREFY+H + YP V + Sbjct: 239 SAYLAAGVISPRQCLHAALSSNHGEFETGDVGTVTWINELLWREFYKHTLVGYPRVSRHR 298 Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365 F P TE ++W L AW++ TG PIIDAAMRQL GWMHNRLRM+ A FL K+L Sbjct: 299 AFRPETEALKWRDAPDELLAWQEARTGLPIIDAAMRQLLETGWMHNRLRMVVAMFLTKNL 358 Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425 L+DWR GE +FM L+DGDLASNNGGWQW++STG DS PYFRIFNP Q +RFDP+G FI Sbjct: 359 LIDWREGERFFMRHLIDGDLASNNGGWQWSSSTGTDSAPYFRIFNPLSQSERFDPEGVFI 418 Query: 426 RHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477 + WLPEL N+ + IH P S ++ +YP PIVD K+ L + A Sbjct: 419 KRWLPELANLNKKQIHDPSSMGGLFGVA-DYPKPIVDLSKSRARALAAFKAL 469 >gi|289624749|ref|ZP_06457703.1| deoxyribodipyrimidine photolyase [Pseudomonas syringae pv. aesculi str. NCPPB3681] gi|289648378|ref|ZP_06479721.1| deoxyribodipyrimidine photolyase [Pseudomonas syringae pv. aesculi str. 2250] gi|330868910|gb|EGH03619.1| deoxyribodipyrimidine photolyase [Pseudomonas syringae pv. aesculi str. 0893_23] Length = 482 Score = 474 bits (1219), Expect = e-131, Method: Composition-based stats. Identities = 195/473 (41%), Positives = 274/473 (57%), Gaps = 7/473 (1%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 + L+WLR+DLR+ DN AL AA +AV++ +P QWR H + + F +L+++ Sbjct: 1 MQLIWLRSDLRVHDNTALTAAMERG--PTLAVYLLSPAQWRSHDDADCKVDFWLRNLVEL 58 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL- 127 +K+L + + +D + E L + C Q +V L N++Y INE RRD+ ++K L Sbjct: 59 EKALGALNVPLLIREADTWDQAPEVLSTLCTQFKVEGLHLNQEYGINETRRDQAVQKALE 118 Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187 + V S+ D +L PGSIL ++V+T F+K + QA + + P + + Sbjct: 119 KAGVQVTSYLDQLLFKPGSILTKTGNYFQVFTQFKKVCYNRMHQAMPQPVRTPKAQQSLS 178 Query: 188 VTPS---NIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244 + + F P +A+ ++P GE A + F ++ YY +RD PA GTSQ Sbjct: 179 IKSDSIPDQVEGFATPSKALRDLWPAGEAEARRRMATFADAQISYYKTERDFPAKPGTSQ 238 Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304 LS YL+ GV+SPRQC + G +W+NEL+WREFY+H + YP V Sbjct: 239 LSAYLAAGVISPRQCLHAALGSNQGEFETGDVGTVTWINELLWREFYKHTLVGYPRVSRH 298 Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364 + F P TE ++W L AW++ TG PIIDAAMRQL GWMHNRLRM+ A FL K+ Sbjct: 299 RAFRPETEALKWRDAPEELLAWQEARTGLPIIDAAMRQLLETGWMHNRLRMVVAMFLTKN 358 Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424 LL+DWR GE +FM L+DGDLASNNGGWQW++STG DS PYFRIFNP Q +RFDP+G F Sbjct: 359 LLIDWREGERFFMRHLIDGDLASNNGGWQWSSSTGTDSAPYFRIFNPLSQSERFDPEGVF 418 Query: 425 IRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477 I+ WLPEL ++ + IH P S + +YP PIVD K+ L + A Sbjct: 419 IKRWLPELADLNKKQIHDPASIGGLFGAA-DYPKPIVDLSKSRARALAAFKAL 470 >gi|90577743|ref|ZP_01233554.1| deoxyribodipyrimidine photolyase [Vibrio angustum S14] gi|90440829|gb|EAS66009.1| deoxyribodipyrimidine photolyase [Vibrio angustum S14] Length = 489 Score = 474 bits (1219), Expect = e-131, Method: Composition-based stats. Identities = 225/486 (46%), Positives = 308/486 (63%), Gaps = 12/486 (2%) Query: 1 MKATTAMSVHLV-WLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSH 59 M T H+V W R+DLR+ DN AL A +S +IA+FIATP QW QH ++A Q Sbjct: 1 MTNKTVTEQHVVIWFRSDLRVVDNTALNHAI-DSGLPIIALFIATPMQWHQHNMAAVQVD 59 Query: 60 FIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRR 119 FI+ L +++ L+++ I Q + ++F +S+ +D C +F N+QY INE +R Sbjct: 60 FIHRRLQVLKQQLAKRNIPLQVIEVNDFAESVHVIDQICFDYNAVHVFANKQYPINEQQR 119 Query: 120 DKLLEKRLQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLP 178 D + + + I FDD+ +L P ++L +++KV+TPFR A I+ + + Sbjct: 120 DNSAGELIAKKGIKFSIFDDNYILQPETVLTRDGELFKVFTPFRNAWIKRFTLSPCYPVT 179 Query: 179 VPAIRLTGP-----VTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQ 233 +T ++ SN + F+YP ++P+ E+ L F + K Y + Sbjct: 180 KDGYIVTSDAVIKLLSVSNPIKAFNYPI-IDSVLWPVDEETIAQRLETFFETKAETYHQN 238 Query: 234 RDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKS-GAFSWLNELIWREFYR 292 RD PAI GTS LSPYL+IG LS RQC +L + F + L K GAF+WLNE++WREFY Sbjct: 239 RDFPAIDGTSCLSPYLAIGALSARQCLYQLLQHFPNALEINKDDGAFTWLNEIVWREFYG 298 Query: 293 HLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNR 352 HL+ YP + +PF +T ++W D+ LL+AW++G TGFPI+DAAMRQL + GWMHNR Sbjct: 299 HLLHRYPELSQYQPFQKFTRFVQWKDDAVLLKAWQEGKTGFPIVDAAMRQLRSTGWMHNR 358 Query: 353 LRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPT 412 LRMITASFL KDLL DWR+GE++FM L+DGD ASNNGGWQWAASTG D+ PYFR+FNPT Sbjct: 359 LRMITASFLTKDLLCDWRVGEQWFMQHLIDGDFASNNGGWQWAASTGTDAQPYFRVFNPT 418 Query: 413 IQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLN 472 +QG+RFDP+G FIR W+ EL +VP +YIH PH W SLNYPLPIVDHK+A + Sbjct: 419 LQGQRFDPKGDFIRTWVKELEHVPDKYIHTPHQWASAE--SLNYPLPIVDHKEARLIAIE 476 Query: 473 QYYAAK 478 + AK Sbjct: 477 SFKQAK 482 >gi|311693606|gb|ADP96479.1| deoxyribodipyrimidine photolyase [marine bacterium HP15] Length = 467 Score = 473 bits (1218), Expect = e-131, Method: Composition-based stats. Identities = 202/471 (42%), Positives = 279/471 (59%), Gaps = 7/471 (1%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 LVW RNDLR+ DN AL AAC +S+ +V A FI TP+QW++H S + F+ A + Sbjct: 2 TQLVWFRNDLRVADNPALTAACESSE-EVRACFILTPDQWQEHDWSPARVQFVVAHANAL 60 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128 + L++ GI + Q FDDS+ L+S+C + VT L +N +Y +NE +RDK L+ R Sbjct: 61 AEELAKLGIPLSFIQAKRFDDSLGKLESHCEEHGVTALHFNEEYGVNERKRDKALKHRFD 120 Query: 129 HRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187 I + + D + P G IL Y V+TPF + + + P P R Sbjct: 121 QLGIAVRKYRDQTVAPVGEILTQQNDPYSVFTPFSRRWRSWIEETHPGLFPTPKARGNA- 179 Query: 188 VTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSP 247 V+P I + A +P+ GE A L +F +++ Y E+RD PAI GTSQ+SP Sbjct: 180 VSPEQIDAIPEAFRDAPEPLVATGEDAAHDQLERFLEKRGGAYKEKRDFPAIDGTSQISP 239 Query: 248 YLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPF 307 YL+ GVLS RQC ++ + G +W+ E+ WR+FY +++ +P V M + F Sbjct: 240 YLANGVLSGRQCLIAGRQ--AQGAGGNQEGLGTWITEIAWRDFYINILYHFPRVSMHRAF 297 Query: 308 IPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLV 367 P TE +EWN +AWK G TG PI+DAAMRQLN GWMHNRLRMITA +L K+L + Sbjct: 298 KPETETLEWNNPGDRFEAWKTGNTGVPIVDAAMRQLNQTGWMHNRLRMITAMYLTKNLFI 357 Query: 368 DWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRH 427 DWR+GE YFMS+L+DG LASNNGGWQW+ASTG D+ PYFR+FNP Q +RFDP G FIR Sbjct: 358 DWRLGEAYFMSKLIDGFLASNNGGWQWSASTGTDAAPYFRVFNPVTQSERFDPDGDFIRE 417 Query: 428 WLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478 W+PEL + ++ IH P + + YP IVD K++ + ++ K Sbjct: 418 WVPELAKLDSKRIHDPGA--KGGVIPKGYPRQIVDLKESRKEAIAKFQELK 466 >gi|237799740|ref|ZP_04588201.1| deoxyribodipyrimidine photolyase [Pseudomonas syringae pv. oryzae str. 1_6] gi|331022595|gb|EGI02652.1| deoxyribodipyrimidine photolyase [Pseudomonas syringae pv. oryzae str. 1_6] Length = 482 Score = 473 bits (1217), Expect = e-131, Method: Composition-based stats. Identities = 190/473 (40%), Positives = 272/473 (57%), Gaps = 7/473 (1%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 + L+WLR+DLR+ DN AL AA +AV++ +P QW H + + F +L+++ Sbjct: 1 MQLIWLRSDLRVHDNTALTAALQRG--PTLAVYLLSPAQWHSHDDADCKVDFWLRNLVEL 58 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128 +K+L + + + +D + E L + C + +V + N++Y +NE RRD+ +++ L+ Sbjct: 59 EKALGKLNVPLLIREADTWDKAPEVLSTLCKELKVEGVHLNQEYGVNETRRDQAVQQTLE 118 Query: 129 HRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187 I + D +L PGSIL ++V+T F+K L +A R + P + Sbjct: 119 KDGIHVTHYLDQLLFKPGSILTKTGNYFQVFTQFKKVCYTRLHEAMPRLVRTPPAQQPLS 178 Query: 188 VTPS---NIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244 V + F P +A+ ++P GE A + F E++ YY RD PA GTSQ Sbjct: 179 VKSDAIPEQVKGFATPSKALRDLWPAGEAEASRRMAAFADEQISYYKTDRDFPAKPGTSQ 238 Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304 LS YL+ GV+SPRQC + G +W+NEL+WREFY+H + +P V Sbjct: 239 LSAYLAAGVISPRQCLHAALASNQGEFETGDVGTVTWINELLWREFYKHTLVGFPRVSRH 298 Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364 + F P TE ++W L AW++ TG PIIDAAMRQL GWMHNRLRM+ A FL K+ Sbjct: 299 RAFRPETEALKWRDAPDELLAWQEARTGLPIIDAAMRQLLETGWMHNRLRMVVAMFLTKN 358 Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424 LL+DWR GE +FM L+DGDLASNNGGWQW++STG DS PYFRIFNP Q +RFDP+G F Sbjct: 359 LLIDWREGERFFMRHLIDGDLASNNGGWQWSSSTGTDSAPYFRIFNPLSQSERFDPEGVF 418 Query: 425 IRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477 I+ WLPEL ++ + +H P S + +YP PIVD K+ L + A Sbjct: 419 IKRWLPELADLNKKQLHDPSSIGGLFGAA-DYPKPIVDLSKSRARALAAFKAL 470 >gi|330887853|gb|EGH20514.1| deoxyribodipyrimidine photolyase [Pseudomonas syringae pv. mori str. 301020] Length = 482 Score = 473 bits (1217), Expect = e-131, Method: Composition-based stats. Identities = 196/473 (41%), Positives = 275/473 (58%), Gaps = 7/473 (1%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 + L+WLR+DLR+ DN AL AA +AV++ +P QWR H + + F +L+++ Sbjct: 1 MQLIWLRSDLRVHDNTALTAAMERG--PTLAVYLLSPAQWRSHDDADCKVDFWLRNLVEL 58 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL- 127 +K+L + + +D + E L + C Q +V L N++Y INE RRD+ ++K L Sbjct: 59 EKALGALNVPLLIREADTWDQAPEVLSTLCTQLKVEGLHLNQEYGINETRRDQAVQKALE 118 Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187 + V S+ D +L PGSIL A ++V+T F+K + QA + + P + + Sbjct: 119 KAGVQVTSYLDQLLFKPGSILTKAGNYFQVFTQFKKVCYNRMHQAMPQPVRTPKAQQSLS 178 Query: 188 VTPS---NIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244 + + F P +A+ ++P GE A + F ++ YY +RD PA GTSQ Sbjct: 179 IKSDSIPDQVEGFATPSKALRDLWPAGEAEARRRMATFADAQISYYKTERDFPAKPGTSQ 238 Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304 LS YL+ GV+SPRQC + G +W+NEL+WREFY+H + YP V Sbjct: 239 LSAYLAAGVISPRQCLHAALGSNQGEFETGDVGTVTWINELLWREFYKHTLVGYPRVSRH 298 Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364 + F P TE ++W L AW++ TG PIIDAAMRQL GWMHNRLRM+ A FL K+ Sbjct: 299 RAFRPETEALKWRDAPEELLAWQEARTGLPIIDAAMRQLLETGWMHNRLRMVVAMFLTKN 358 Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424 LL+DWR GE +FM L+DGDLASNNGGWQW++STG DS PYFRIFNP Q +RFDP+G F Sbjct: 359 LLIDWREGERFFMRHLIDGDLASNNGGWQWSSSTGTDSAPYFRIFNPLSQSERFDPEGLF 418 Query: 425 IRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477 I+ WLPEL ++ + IH P S + +YP PIVD K+ L + A Sbjct: 419 IKRWLPELADLNKKQIHDPASIGGLFGAA-DYPKPIVDLSKSRARALAAFKAL 470 >gi|257482020|ref|ZP_05636061.1| deoxyribodipyrimidine photolyase [Pseudomonas syringae pv. tabaci ATCC 11528] gi|330988593|gb|EGH86696.1| deoxyribodipyrimidine photolyase [Pseudomonas syringae pv. lachrymans str. M301315] Length = 482 Score = 473 bits (1217), Expect = e-131, Method: Composition-based stats. Identities = 195/473 (41%), Positives = 274/473 (57%), Gaps = 7/473 (1%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 + L+WLR+DLR+ DN AL AA +AV++ +P QWR H + + F +L+++ Sbjct: 1 MQLIWLRSDLRVHDNTALTAAMERG--PTLAVYLLSPAQWRSHDDADCKVDFWLRNLVEL 58 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL- 127 +K+L + + +D + E L + C Q +V L N++Y INE RRD+ ++K L Sbjct: 59 EKALGALNVPLLIREADTWDQAPEVLSTLCTQFKVEGLHLNQEYGINETRRDQAVQKALE 118 Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187 + V S+ D +L PGSIL ++V+T F+K + QA + + P + + Sbjct: 119 KAGVQVTSYLDQLLFKPGSILTKTGNYFQVFTQFKKVCYNRMHQAMPQPVRTPKAQQSLS 178 Query: 188 VTPS---NIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244 + + F P +A+ ++P GE A + F ++ YY +RD PA GTSQ Sbjct: 179 IKSDSIPDQVEGFATPSKALRDLWPAGEAEARRRMATFADAQISYYKTERDFPAKPGTSQ 238 Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304 LS YL+ GV+SPRQC + G +W+NEL+WREFY+H + YP V Sbjct: 239 LSAYLAAGVISPRQCLHAALGSNQGEFETGDVGTVTWINELLWREFYKHTLVGYPRVSRH 298 Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364 + F P TE ++W L AW++ TG PIIDAAMRQL GWMHNRLRM+ A FL K+ Sbjct: 299 RAFRPETEALKWRDAPEELLAWQEARTGLPIIDAAMRQLLETGWMHNRLRMVVAMFLTKN 358 Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424 LL+DWR GE +FM L+DGDLASNNGGWQW++STG DS PYFRIFNP Q +RFDP+G F Sbjct: 359 LLIDWREGERFFMRHLIDGDLASNNGGWQWSSSTGTDSAPYFRIFNPLSQSERFDPEGVF 418 Query: 425 IRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477 I+ WLPEL ++ + IH P S + +YP PIVD K+ L + A Sbjct: 419 IKRWLPELADLNKKQIHDPASIGGLFGAA-DYPKPIVDLSKSRARALTAFKAL 470 >gi|213967212|ref|ZP_03395361.1| deoxyribodipyrimidine photolyase [Pseudomonas syringae pv. tomato T1] gi|301381052|ref|ZP_07229470.1| deoxyribodipyrimidine photolyase [Pseudomonas syringae pv. tomato Max13] gi|302062191|ref|ZP_07253732.1| deoxyribodipyrimidine photolyase [Pseudomonas syringae pv. tomato K40] gi|213928054|gb|EEB61600.1| deoxyribodipyrimidine photolyase [Pseudomonas syringae pv. tomato T1] Length = 482 Score = 473 bits (1217), Expect = e-131, Method: Composition-based stats. Identities = 194/473 (41%), Positives = 277/473 (58%), Gaps = 7/473 (1%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 + L+WLR+DLR+ DN AL AA +AV++ +P QWR H + + F +L+++ Sbjct: 1 MQLIWLRSDLRVHDNTALTAAMQRG--PTLAVYLLSPTQWRNHDDADCKVDFWLRNLVEL 58 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128 +K+L + + + +D + E L + C Q +V L+ N +Y INE RRD+ +++ +Q Sbjct: 59 EKALGKLNVPLLIREADTWDQAPEVLSTLCKQLKVEGLYLNEEYGINETRRDQAVQQSMQ 118 Query: 129 HRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187 + S D +L PGSIL ++V+T F+K L QA R++ P + Sbjct: 119 ADGVHFTSHLDQLLFKPGSILTKTGNYFQVFTQFKKVCYTRLHQAMPRTVHTPEAQQPLS 178 Query: 188 VTPS---NIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244 + + + F P + + ++P GE A + F E++ YY ++RD PA GTSQ Sbjct: 179 IKSDAIPDQVKGFSTPSKTLRDLWPAGEVEASRRIEAFAGEQISYYKDERDFPARPGTSQ 238 Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304 LS YL+ GV+SPRQC + G +W+NEL+WREFY+H + YP V Sbjct: 239 LSAYLAAGVISPRQCLHAALASNQGEFETGDVGTVTWINELLWREFYKHTLVGYPRVSRH 298 Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364 + F P TE ++W L AW++ TG PIIDAAMRQL GWMHNRLRM+ A FL K+ Sbjct: 299 RAFRPETEALKWRDAPEELLAWQEARTGLPIIDAAMRQLLETGWMHNRLRMVVAMFLTKN 358 Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424 LL+DWR GE +FM L+DGDLA+NNGGWQW++STG DS PYFRIFNP Q +RFDP+G F Sbjct: 359 LLIDWREGERFFMRHLIDGDLAANNGGWQWSSSTGTDSAPYFRIFNPLSQSERFDPEGVF 418 Query: 425 IRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477 I+ WLPEL ++ + IH P S ++ +YP PIVD K+ L + A Sbjct: 419 IKRWLPELADLNKKQIHDPASVGGLFGVA-DYPKPIVDLSKSRARALAAFKAL 470 >gi|331008878|gb|EGH88934.1| deoxyribodipyrimidine photolyase [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 482 Score = 472 bits (1216), Expect = e-131, Method: Composition-based stats. Identities = 195/473 (41%), Positives = 274/473 (57%), Gaps = 7/473 (1%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 + L+WLR+DLR+ DN AL AA +AV++ +P QWR H + + F +L+++ Sbjct: 1 MQLIWLRSDLRVHDNTALTAAMERG--PTLAVYLLSPAQWRSHDDADCKVDFWLRNLVEL 58 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL- 127 +K+L + + +D + E L + C Q +V L N++Y INE RRD+ ++K L Sbjct: 59 EKALGALNVPLLIREADTWDQAPEVLSTLCTQFKVEGLHLNQEYGINETRRDQAVQKALE 118 Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187 + V S+ D +L PGSIL ++V+T F+K + QA + + P + + Sbjct: 119 KAGVQVTSYLDQLLFKPGSILTKTGNYFQVFTQFKKVCYNRMHQAMPQPVRTPKAQQSLS 178 Query: 188 VTPS---NIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244 + + F P +A+ ++P GE A + F ++ YY +RD PA GTSQ Sbjct: 179 IKSDSIPDQVEGFATPSKALRDLWPAGEAEARRRMATFADAQISYYKTERDFPAKPGTSQ 238 Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304 LS YL+ GV+SPRQC + G +W+NEL+WREFY+H + YP V Sbjct: 239 LSAYLAAGVISPRQCLHAALGSNQGEFETGDVGTVTWINELLWREFYKHTLVGYPRVSRH 298 Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364 + F P TE ++W L AW++ TG PIIDAAMRQL GWMHNRLRM+ A FL K+ Sbjct: 299 RAFRPETEALKWRDAPEELLAWQEARTGLPIIDAAMRQLLETGWMHNRLRMVVAMFLTKN 358 Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424 LL+DWR GE +FM L+DGDLASNNGGWQW++STG DS PYFRIFNP Q +RFDP+G F Sbjct: 359 LLIDWREGERFFMRHLIDGDLASNNGGWQWSSSTGTDSPPYFRIFNPLSQSERFDPEGVF 418 Query: 425 IRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477 I+ WLPEL ++ + IH P S + +YP PIVD K+ L + A Sbjct: 419 IKRWLPELADLNKKQIHDPASIGGLFGAA-DYPKPIVDLSKSRARALTAFKAL 470 >gi|71733434|ref|YP_273281.1| deoxyribodipyrimidine photolyase [Pseudomonas syringae pv. phaseolicola 1448A] gi|71553987|gb|AAZ33198.1| deoxyribodipyrimidine photolyase [Pseudomonas syringae pv. phaseolicola 1448A] Length = 482 Score = 472 bits (1216), Expect = e-131, Method: Composition-based stats. Identities = 193/473 (40%), Positives = 273/473 (57%), Gaps = 7/473 (1%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 + L+WLR+DLR+ DN AL AA +AV++ +P QWR H + + F +L+++ Sbjct: 1 MQLIWLRSDLRVHDNTALTAAMERG--PTLAVYLLSPAQWRSHDDADCKVDFWLRNLVEL 58 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL- 127 +K+L + + +D + E L + C Q ++ L N++Y INE RRD+ ++K L Sbjct: 59 EKALGALNVPLLIREADTWDQAPEVLSTLCTQLKIEGLHLNQEYGINETRRDQAVQKALE 118 Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187 + V S+ D +L PGSIL ++V+T F+K + QA + + P + + Sbjct: 119 KAGVQVTSYLDQLLFKPGSILTKTGNYFQVFTQFKKVCYNRMHQAMPQPVRTPKAQQSLS 178 Query: 188 VTPS---NIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244 + + F P +A+ ++P GE A + F ++ YY +RD PA GTSQ Sbjct: 179 IKSDSIPDQVEGFATPSKALRDLWPAGEAEARRRMATFADAQISYYKTERDFPAKPGTSQ 238 Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304 LS YL+ GV+SPRQC + G +W+NEL+WREFY+H + YP V Sbjct: 239 LSAYLAAGVISPRQCLHAALGSNQGEFETGDVGTVTWINELLWREFYKHTLVGYPRVSRH 298 Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364 + F P TE ++W L AW++ TG PIIDAAMRQL GWMHNRLRM+ A FL K+ Sbjct: 299 RAFRPETEALKWRDAPEELLAWQEARTGLPIIDAAMRQLLETGWMHNRLRMVVAMFLTKN 358 Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424 LL+DW GE +FM L+DGDLASNNGGWQW++STG DS PYFRIFNP Q +RFDP+G F Sbjct: 359 LLIDWHEGERFFMRHLIDGDLASNNGGWQWSSSTGTDSAPYFRIFNPLSQSERFDPEGVF 418 Query: 425 IRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477 I+ WLPEL ++ + IH P S + +YP PIVD K+ L + A Sbjct: 419 IKRWLPELADLNKKQIHDPASIGGLFGAA-DYPKPIVDLSKSRARALAAFKAL 470 >gi|330873295|gb|EGH07444.1| deoxyribodipyrimidine photolyase [Pseudomonas syringae pv. morsprunorum str. M302280PT] Length = 482 Score = 472 bits (1215), Expect = e-131, Method: Composition-based stats. Identities = 193/473 (40%), Positives = 277/473 (58%), Gaps = 7/473 (1%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 + L+WLR+DLR+ DN AL AA +AV++ +P QWR H + + F +L+++ Sbjct: 1 MQLIWLRSDLRVHDNTALTAALQRG--PTLAVYLLSPTQWRNHDDADCKVDFWLRNLVEL 58 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128 +K+L + + + +D + E L S C Q +V L N +Y INE RRD+ +++ +Q Sbjct: 59 EKALGKLNVPLLIREADTWDQAPEVLSSLCKQFKVEGLHLNEEYGINETRRDQAVQQAMQ 118 Query: 129 HRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187 + S D +L PGSIL ++V+T F+K L +A R++ P + Sbjct: 119 ADGVHFTSHLDQLLFKPGSILTKTGNYFQVFTQFKKVCYTRLHEAMPRTVHTPEAQQPLS 178 Query: 188 VTPS---NIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244 + + + F P +++ ++P GE A + F E++ YY ++RD PA GTSQ Sbjct: 179 IKSDAIPDQVKGFSTPSKSLRDLWPAGEVEASRRIEAFADEQISYYKDERDFPAKPGTSQ 238 Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304 LS YL+ GV+SPRQC + G +W+NEL+WREFY+H + YP V Sbjct: 239 LSAYLAAGVISPRQCLHAALASNQGEFETGDVGTVTWINELLWREFYKHTLVGYPRVSRH 298 Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364 + F P TE ++W L AW++ TG PIIDAAMRQL GWMHNRLRM+ A FL K+ Sbjct: 299 RAFRPETEALKWRDAPEELLAWQEARTGLPIIDAAMRQLLETGWMHNRLRMVVAMFLTKN 358 Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424 LL+DWR GE +FM L+DGDLA+NNGGWQW++STG DS PYFRIFNP Q +RFDP+G F Sbjct: 359 LLIDWREGERFFMRHLIDGDLAANNGGWQWSSSTGTDSAPYFRIFNPLSQSERFDPEGVF 418 Query: 425 IRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477 I+ W+PEL ++ + IH P S ++ +YP PIVD K+ L + A Sbjct: 419 IKRWMPELADLNKKQIHDPASVGGLFGVA-DYPKPIVDLSKSRARALAAFKAL 470 >gi|320325702|gb|EFW81763.1| deoxyribodipyrimidine photolyase [Pseudomonas syringae pv. glycinea str. B076] gi|320327379|gb|EFW83393.1| deoxyribodipyrimidine photolyase [Pseudomonas syringae pv. glycinea str. race 4] gi|330881872|gb|EGH16021.1| deoxyribodipyrimidine photolyase [Pseudomonas syringae pv. glycinea str. race 4] Length = 482 Score = 472 bits (1215), Expect = e-131, Method: Composition-based stats. Identities = 193/473 (40%), Positives = 274/473 (57%), Gaps = 7/473 (1%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 + L+WLR+DLR+ DN AL AA +AV++ +P QWR H + + F +L+++ Sbjct: 1 MQLIWLRSDLRVHDNTALTAAMERG--PTLAVYLLSPAQWRSHDDADCKVDFWLRNLVEL 58 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL- 127 +K+L + + +D + E L + C Q ++ L N++Y INE RRD+ ++K L Sbjct: 59 EKALGALNVPLLIREADTWDQAPEVLSTLCTQLKIEGLHLNQEYGINETRRDQAVQKALE 118 Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187 + V S+ D +L PGSIL ++V+T F+K + QA + + P + + Sbjct: 119 KAGVQVTSYLDQLLFKPGSILTKTGNYFQVFTQFKKVCYNRMHQAMPQPVRTPKAQQSLS 178 Query: 188 VTPS---NIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244 + + F P +A+ ++P GE A + F ++ YY +RD PA GTSQ Sbjct: 179 IKSDSIPDQVEGFATPSKALRDLWPAGEAEARRRMATFADAQISYYKTERDFPAKPGTSQ 238 Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304 LS YL+ GV+SPRQC + G +W+NEL+WREFY+H + YP V Sbjct: 239 LSAYLAAGVISPRQCLHAALGSNQGEFETGDVGTVTWINELLWREFYKHTLVGYPRVSRH 298 Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364 + F P TE ++W L AW++ TG PIIDAAMRQL GWMHNRLRM+ A FL K+ Sbjct: 299 RAFRPETEALKWRDAPEELLAWQEARTGLPIIDAAMRQLLETGWMHNRLRMVVAMFLTKN 358 Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424 LL+DWR GE +FM L+DGDLA+NNGGWQW++STG DS PYFRIFNP Q +RFDP+G F Sbjct: 359 LLIDWREGERFFMRHLIDGDLAANNGGWQWSSSTGTDSAPYFRIFNPLSQSERFDPEGLF 418 Query: 425 IRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477 I+ WLPEL ++ + IH P S + +YP PIVD K+ L + A Sbjct: 419 IKRWLPELADLNKKQIHDPASIGGLFGAA-DYPKPIVDLSKSRARALAAFKAL 470 >gi|330964968|gb|EGH65228.1| deoxyribodipyrimidine photolyase [Pseudomonas syringae pv. actinidiae str. M302091] Length = 482 Score = 471 bits (1213), Expect = e-130, Method: Composition-based stats. Identities = 193/473 (40%), Positives = 276/473 (58%), Gaps = 7/473 (1%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 + L+WLR+DLR+ DN AL AA +AV++ +P QWR H + + F +L+++ Sbjct: 1 MQLIWLRSDLRVHDNTALTAALQRG--PTLAVYLLSPTQWRNHDDADCKVDFWLRNLVEL 58 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128 +K+L + + + +D + E L S C Q +V L N +Y INE RRD+ +++ +Q Sbjct: 59 EKALGKLNVPLLIREADTWDQAPEVLSSLCKQFKVEGLHLNEEYGINETRRDQAVQQAMQ 118 Query: 129 HRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187 + S D +L PGSIL ++V+T F+K L +A R++ P + Sbjct: 119 ADGVHFTSHLDQLLFKPGSILTKTGNYFQVFTQFKKVCYTRLHEAMPRTVHTPEAQQPLS 178 Query: 188 VTPS---NIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244 + + + F P +++ ++P GE A + F E++ YY ++RD PA GTSQ Sbjct: 179 IKSDAIPDQVKGFSTPSKSLRDLWPAGEVEASRRIEAFADEQISYYKDERDFPAKPGTSQ 238 Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304 LS YL GV+SPRQC + G +W+NEL+WREFY+H + YP V Sbjct: 239 LSAYLVAGVISPRQCLHAALASNQGEFETGDVGTVTWINELLWREFYKHTLVGYPRVSRH 298 Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364 + F P TE ++W L AW++ TG PIIDAAMRQL GWMHNRLRM+ A FL K+ Sbjct: 299 RAFRPETEALKWRDAPEELLAWQEARTGLPIIDAAMRQLLETGWMHNRLRMVVAMFLTKN 358 Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424 LL+DWR GE +FM L+DGDLA+NNGGWQW++STG DS PYFRIFNP Q +RFDP+G F Sbjct: 359 LLIDWREGERFFMRHLIDGDLAANNGGWQWSSSTGTDSAPYFRIFNPLSQSERFDPEGVF 418 Query: 425 IRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477 I+ W+PEL ++ + IH P S ++ +YP PIVD K+ L + A Sbjct: 419 IKRWMPELADLNKKQIHDPASVGGLFGVA-DYPKPIVDLSKSRARALAAFKAL 470 >gi|298485692|ref|ZP_07003771.1| Deoxyribodipyrimidine photolyase [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|298159718|gb|EFI00760.1| Deoxyribodipyrimidine photolyase [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] Length = 482 Score = 471 bits (1212), Expect = e-130, Method: Composition-based stats. Identities = 196/473 (41%), Positives = 275/473 (58%), Gaps = 7/473 (1%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 + L+WLR+DLR+ DN AL AA +AV++ +P QWR H + + F +L+++ Sbjct: 1 MQLIWLRSDLRVHDNTALTAAMERG--PTLAVYLLSPAQWRSHDDADCKVDFWLRNLVEL 58 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL- 127 +K+L + + +D + E L + C Q +V L N++Y INE RRD+ ++K L Sbjct: 59 EKALGALNVPLLIREADTWDQAPEVLSTLCTQFKVEGLHLNQEYGINETRRDQAVQKALE 118 Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187 + V S+ D +L PGSIL ++V+T F+K + QA + + P + + Sbjct: 119 KAGVQVTSYLDQLLFKPGSILTKTGNYFQVFTQFKKVCYNRMHQAMPQPVRTPKAQQSLS 178 Query: 188 VTPS---NIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244 + + F P +A+ ++P GE A + F ++ YY +RD PA GTSQ Sbjct: 179 IKSDSIPDQVEGFATPSKALRDLWPAGEAEARRRVATFADAQISYYKTERDFPAKPGTSQ 238 Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304 LS YL+ GV+SPRQC + G +W+NEL+WREFY+H + YP V Sbjct: 239 LSAYLAAGVISPRQCLHAALGSNQGEFETGDVGTVTWINELLWREFYKHTLVGYPRVSRH 298 Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364 + F P TE ++W L AW++ TG PIIDAAMRQL GWMHNRLRM+ A FL K+ Sbjct: 299 RAFRPETEALKWRDAPEELLAWQEARTGLPIIDAAMRQLLETGWMHNRLRMVVAMFLTKN 358 Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424 LL+DWR GE +FM L+DGDLASNNGGWQW++STG DS PYFRIFNP Q +RFDP+G F Sbjct: 359 LLIDWREGERFFMRHLIDGDLASNNGGWQWSSSTGTDSAPYFRIFNPLSQSERFDPEGLF 418 Query: 425 IRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477 I+ WLPEL ++ + IH P S D + +YP PIVD K+ L + A Sbjct: 419 IKRWLPELADLNRKQIHDPASIGGLFDAA-DYPKPIVDLSKSRARALAAFKAL 470 >gi|28868336|ref|NP_790955.1| deoxyribodipyrimidine photolyase [Pseudomonas syringae pv. tomato str. DC3000] gi|28851573|gb|AAO54650.1| deoxyribodipyrimidine photolyase [Pseudomonas syringae pv. tomato str. DC3000] gi|331018110|gb|EGH98166.1| deoxyribodipyrimidine photolyase [Pseudomonas syringae pv. lachrymans str. M302278PT] Length = 482 Score = 471 bits (1212), Expect = e-130, Method: Composition-based stats. Identities = 194/473 (41%), Positives = 276/473 (58%), Gaps = 7/473 (1%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 + L+WLR+DLR+ DN AL AA +AV++ +P QWR H + + F +L+++ Sbjct: 1 MQLIWLRSDLRVHDNTALTAAMQRG--PTLAVYLLSPTQWRNHDDADCKVDFWLRNLVEL 58 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128 +K+L + + + +D + E L + C Q +V L N +Y INE RRD+ +++ +Q Sbjct: 59 EKALGKLNVPLLIREADTWDQAPEVLATLCKQFKVEGLHLNEEYGINETRRDQAVQQSMQ 118 Query: 129 HRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187 + S D +L PGSIL ++V+T F+K L QA R++ P + Sbjct: 119 ADGVHFTSHLDQLLFKPGSILTKTGNYFQVFTQFKKVCYTRLHQAMPRTVHTPEAQQPLS 178 Query: 188 VTPS---NIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244 + + + F P + + ++P GE A + F E++ YY ++RD PA GTSQ Sbjct: 179 IKSDAIPDQVKGFSTPSKTLRDLWPAGEVEASRRIEAFAGEQISYYKDERDFPARPGTSQ 238 Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304 LS YL+ GV+SPRQC + G +W+NEL+WREFY+H + YP V Sbjct: 239 LSAYLAAGVISPRQCLHAALASNQGEFETGDVGTVTWINELLWREFYKHTLVGYPRVSRH 298 Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364 + F P TE ++W L AW++ TG PIIDAAMRQL GWMHNRLRM+ A FL K+ Sbjct: 299 RAFRPETEALKWRDAPEELLAWQEARTGLPIIDAAMRQLLETGWMHNRLRMVVAMFLTKN 358 Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424 LL+DWR GE +FM L+DGDLA+NNGGWQW++STG DS PYFRIFNP Q +RFDP+G F Sbjct: 359 LLIDWREGERFFMRHLIDGDLAANNGGWQWSSSTGTDSAPYFRIFNPLSQSERFDPEGVF 418 Query: 425 IRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477 I+ WLPEL ++ + IH P S ++ +YP PIVD K+ L + A Sbjct: 419 IKRWLPELADLNKKQIHDPASVGGLFGVA-DYPKPIVDLSKSRARALAAFKAL 470 >gi|329894045|ref|ZP_08270030.1| Deoxyribodipyrimidine photolyase [gamma proteobacterium IMCC3088] gi|328923217|gb|EGG30537.1| Deoxyribodipyrimidine photolyase [gamma proteobacterium IMCC3088] Length = 467 Score = 471 bits (1211), Expect = e-130, Method: Composition-based stats. Identities = 194/471 (41%), Positives = 279/471 (59%), Gaps = 4/471 (0%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M+ HLVW R DLR+ DN AL+ AC + +A VIA+F ATP+QWR H ++ + F++ +L Sbjct: 1 MTRHLVWFRQDLRVYDNTALWHACLDPEADVIALFCATPQQWRLHDMAPVRERFLWRNLT 60 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 +++ L + I C F+D ++ + + C VT L+ N +Y +NE +RD+ + + Sbjct: 61 ALKERLGELNIPLVVKHCQTFEDCVQDVPTLCEALGVTNLYANCEYPVNEQKRDRAIREA 120 Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 L +V C D + P G +L Y V++PF++A I+ P P R Sbjct: 121 LADKVSCHWHHDFGIKPLG-LLTKTGNPYTVFSPFKRAWIERWRADPAPIYPAPEPRRCS 179 Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246 P + D QA+D +P GE A++ L FC++++ +Y +RD+PA GTS+LS Sbjct: 180 AAVPGSELLASDK--QAMDQFWPAGEDAAMNRLAHFCEDRIDHYKAKRDLPAEPGTSELS 237 Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP 306 PYL+ GV+SPR C + + + + G +W++ELIWR+FY H++ YP V M + Sbjct: 238 PYLAAGVISPRVCLDAAIRANRGDIHEGRQGPDTWISELIWRDFYIHILDTYPRVSMNRC 297 Query: 307 FIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLL 366 F EKI W AW +G TG+PI+DAAMRQL GWMHNRLRM+ A FL K LL Sbjct: 298 FRVEGEKIPWRNAPEDFAAWCEGRTGYPIVDAAMRQLVQTGWMHNRLRMLVAMFLTKQLL 357 Query: 367 VDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIR 426 +DWR GE +FM L+DGDL +NNGGWQWAASTG D+ PYFRIFNP Q ++FD G FIR Sbjct: 358 IDWREGERFFMQHLIDGDLGANNGGWQWAASTGTDAAPYFRIFNPITQSQKFDASGAFIR 417 Query: 427 HWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477 ++PEL + + IH P + L + L+ YP P+V+ K A L + + Sbjct: 418 RFVPELRELSDKDIHMP-APLMRQSLASAYPEPVVELKFARERALAAFKSV 467 >gi|302130079|ref|ZP_07256069.1| deoxyribodipyrimidine photolyase [Pseudomonas syringae pv. tomato NCPPB 1108] Length = 482 Score = 471 bits (1211), Expect = e-130, Method: Composition-based stats. Identities = 193/473 (40%), Positives = 277/473 (58%), Gaps = 7/473 (1%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 + L+WLR+DLR+ DN AL AA +AV++ +P QWR H + + F +L+++ Sbjct: 1 MQLIWLRSDLRVHDNTALTAAMQRG--PTLAVYLLSPTQWRNHDDADCKVDFWLRNLVEL 58 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128 +K++ + + + +D + E L + C Q +V L+ N +Y INE RRD+ +++ +Q Sbjct: 59 EKAIGKLNVPLLIREADTWDQAPEVLSTLCKQLKVEGLYLNEEYGINETRRDQAVQQSMQ 118 Query: 129 HRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187 + S D +L PGSIL ++V+T F+K L QA R++ P + Sbjct: 119 ADGVHFTSHLDQLLFKPGSILTKTGNYFQVFTQFKKVCYTRLHQAMPRTVHTPEAQQPLS 178 Query: 188 VTPS---NIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244 + + + F P + + ++P GE A + F E++ YY ++RD PA GTSQ Sbjct: 179 IKSDAIPDQVKGFSTPSKTLRDLWPAGEVEASRRIEAFAGEQISYYKDERDFPARPGTSQ 238 Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304 LS YL+ GV+SPRQC + G +W+NEL+WREFY+H + YP V Sbjct: 239 LSAYLAAGVISPRQCLHAALASNQGEFETGDVGTVTWINELLWREFYKHTLVGYPRVSRH 298 Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364 + F P TE ++W L AW++ TG PIIDAAMRQL GWMHNRLRM+ A FL K+ Sbjct: 299 RAFRPETEALKWRDAPEELLAWQEARTGLPIIDAAMRQLLETGWMHNRLRMVVAMFLTKN 358 Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424 LL+DWR GE +FM L+DGDLA+NNGGWQW++STG DS PYFRIFNP Q +RFDP+G F Sbjct: 359 LLIDWREGERFFMRHLIDGDLAANNGGWQWSSSTGTDSAPYFRIFNPLSQSERFDPEGVF 418 Query: 425 IRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477 I+ WLPEL ++ + IH P S ++ +YP PIVD K+ L + A Sbjct: 419 IKRWLPELADLNKKQIHDPASVGGLFGVA-DYPKPIVDLSKSRARALAAFKAL 470 >gi|330448252|ref|ZP_08311900.1| deoxyribodipyrimidine photolyase [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] gi|328492443|dbj|GAA06397.1| deoxyribodipyrimidine photolyase [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] Length = 489 Score = 470 bits (1209), Expect = e-130, Method: Composition-based stats. Identities = 227/474 (47%), Positives = 299/474 (63%), Gaps = 9/474 (1%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 ++W R+DLR DN AL A VIA+F+ATP QW +H ++A Q FI+ L +++ Sbjct: 12 IIWFRDDLRTVDNTALNHAIETG-LPVIALFVATPMQWHEHHVAAIQIDFIHRRLRVLKQ 70 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130 L+ I Q QC++F +S++ + YC Q RV +F N+QY +NE RD+ L L Sbjct: 71 QLAALNIPLQVMQCNDFSESVDAIAEYCHQHRVVHVFANKQYPLNEQLRDEKLGVLLAQS 130 Query: 131 VICKS-FDDSVLLPPGSILNHALQMYKVYTPFRKALIQNL---VQADLRSLPVPAIRLTG 186 I +S FDD+ +L P +ILN +++KV+TP+R A I+ + + A+ T Sbjct: 131 GIKQSLFDDNYVLEPETILNREGELFKVFTPYRNAWIKRFSAEQSYPVTTNKEVALSDTT 190 Query: 187 PVTPSNIPRFFDYPFQAIDP-MFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245 ++ + I+ ++P+ E+ L L FC K Y +QRD PAI GTS L Sbjct: 191 SAMLADSTDIQSLGYPVIESVLWPVDEEAILQRLDTFCVTKAQDYHQQRDFPAIDGTSCL 250 Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKS-GAFSWLNELIWREFYRHLMAFYPSVCMG 304 SP+L+IG LS RQC +L + F L K GAF+WLNE+IWREFY HL+ YP + Sbjct: 251 SPFLAIGALSARQCVYQLLQHFPHALEVNKEDGAFTWLNEIIWREFYGHLLHRYPELSKN 310 Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364 PF +T+ + W + LL+AW+ G TGFPI+DAAMRQL GWMHNRLRMITASFL KD Sbjct: 311 HPFQDYTQYVRWQDNPILLKAWQDGKTGFPIVDAAMRQLRATGWMHNRLRMITASFLTKD 370 Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424 LL DWR GE++FM L+DGD ASNNGGWQWAASTG DS PYFRIFNPT+QG+RFDP+G F Sbjct: 371 LLCDWRAGEQWFMQHLIDGDFASNNGGWQWAASTGTDSQPYFRIFNPTLQGQRFDPKGDF 430 Query: 425 IRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478 IR W+ EL VP +YIH PH W SL+YPLPIVDHK+A + + AK Sbjct: 431 IRTWVKELAKVPDKYIHTPHQWDSSG--SLDYPLPIVDHKEARLLAIEAFKQAK 482 >gi|77460957|ref|YP_350464.1| deoxyribodipyrimidine photo-lyase type I [Pseudomonas fluorescens Pf0-1] gi|77384960|gb|ABA76473.1| deoxyribodipyrimidine photo-lyase type I [Pseudomonas fluorescens Pf0-1] Length = 488 Score = 469 bits (1208), Expect = e-130, Method: Composition-based stats. Identities = 191/482 (39%), Positives = 269/482 (55%), Gaps = 7/482 (1%) Query: 4 TTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYA 63 T + L+WLR+DLR DN AL AA + +AV++ +P+QW++H + + F Sbjct: 3 QTETDMQLIWLRSDLRQHDNTALAAAAERGPS--VAVYLLSPQQWQEHDDAPCKIDFWLR 60 Query: 64 SLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLL 123 +L ++ KSL I ++D + L C Q ++ + N +Y INE RRD + Sbjct: 61 NLHKLSKSLGDLNIPLLIRTAPHWDQAPAVLLELCRQLKIEAVHVNEEYGINESRRDAAV 120 Query: 124 EKRLQ-HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAI 182 K LQ + S+ D +L PGS+L ++V++ FRK ++L ++ P Sbjct: 121 AKALQAEGITFHSYLDQLLFKPGSVLTRTGTYFQVFSQFRKVCYEHLHRSMPSLKQAPGK 180 Query: 183 RLT---GPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAI 239 + F P ++ ++P GE A L F ++ YY +RD PA Sbjct: 181 QSALNIASDPVPEAIEGFPTPGASLRALWPAGETEARRRLDTFADAQIDYYKSERDFPAK 240 Query: 240 QGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYP 299 GTSQLS YL+ GV+SPRQC + + K GA +W+NEL+WREFY+H++ YP Sbjct: 241 PGTSQLSAYLAAGVISPRQCLHAALQSNQGEFESGKVGAVTWINELLWREFYKHILVGYP 300 Query: 300 SVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITAS 359 V + F P TE + W L AW++ TG PIIDAAMRQL GWMHNRLRM+ A Sbjct: 301 RVSRHRAFRPETEDLAWRNAPEDLAAWQEARTGLPIIDAAMRQLLETGWMHNRLRMVVAM 360 Query: 360 FLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFD 419 FL K+LL+DWR GE +FM L+DGDLA+NNGGWQW+ASTG DS PYFRIFNP Q ++FD Sbjct: 361 FLTKNLLIDWREGERFFMRHLIDGDLAANNGGWQWSASTGTDSAPYFRIFNPVSQSEKFD 420 Query: 420 PQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479 +G FI+HWLPEL + + IH P S ++ +YP PIV+ + L + Sbjct: 421 SEGLFIKHWLPELAGLNKKEIHNPASVGGLFGVA-DYPAPIVNLSASRERALAAFKNLPS 479 Query: 480 QS 481 +S Sbjct: 480 RS 481 >gi|120555269|ref|YP_959620.1| deoxyribodipyrimidine photo-lyase [Marinobacter aquaeolei VT8] gi|120325118|gb|ABM19433.1| deoxyribodipyrimidine photo-lyase type I [Marinobacter aquaeolei VT8] Length = 463 Score = 469 bits (1207), Expect = e-130, Method: Composition-based stats. Identities = 197/471 (41%), Positives = 265/471 (56%), Gaps = 11/471 (2%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 LVW RNDLR+ DN AL AAC + + V A F+ TP+QW +H SA + F+ + Sbjct: 2 TQLVWFRNDLRLADNPALTAACQSGE-PVRACFVVTPQQWLEHDWSAARVRFVLEHANAL 60 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128 + L++ G+ + F D + L +C + + +N +Y INE RRDK L RL Sbjct: 61 ARELAELGVPLTFLNAERFSDGSDALLQFCKDSDIADVHFNEEYGINERRRDKALRDRLV 120 Query: 129 H-RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187 + + D + P G IL + Y V+TPF + + + P PA + Sbjct: 121 DFGIRVSKYRDQTVAPVGQILTQQNEPYSVFTPFSRRWRSWIEETRPTLHPRPAA-IGNA 179 Query: 188 VTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSP 247 V P A +P+ P GE A L F E+ Y + RD PA+ GTSQLSP Sbjct: 180 VKPEQTDTLPAPFRDAPEPLVPTGEDAAHEQLEAFLTERAKDYKDNRDFPALDGTSQLSP 239 Query: 248 YLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPF 307 YL+ GVLS RQC K+ + G +W+NE+ WR+FY H++ YP V MG+ F Sbjct: 240 YLANGVLSGRQCLIAAKQSGL-----SGEGVETWINEIAWRDFYIHILYHYPRVSMGRAF 294 Query: 308 IPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLV 367 TE + WN +AWK+G TG PI+DAAMRQL GWMHNRLRMITA FL K+L + Sbjct: 295 KEETEALAWNTPGEHFEAWKEGRTGIPIVDAAMRQLKATGWMHNRLRMITAMFLTKNLFI 354 Query: 368 DWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRH 427 DWR+GE +FM L+DG LASNNGGWQW+ASTG D+ PYFR+FNP Q +RFDP+G FIR+ Sbjct: 355 DWRLGEAWFMQNLVDGFLASNNGGWQWSASTGTDAAPYFRVFNPVTQSERFDPKGEFIRN 414 Query: 428 WLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478 W+PEL + + IH P + YP PIVD K++ + ++ A K Sbjct: 415 WVPELAKLDNKRIHDPSR---GGVIPKGYPRPIVDLKESRKEAIARFQALK 462 >gi|262274043|ref|ZP_06051855.1| deoxyribodipyrimidine photolyase [Grimontia hollisae CIP 101886] gi|262221853|gb|EEY73166.1| deoxyribodipyrimidine photolyase [Grimontia hollisae CIP 101886] Length = 483 Score = 469 bits (1206), Expect = e-130, Method: Composition-based stats. Identities = 220/474 (46%), Positives = 284/474 (59%), Gaps = 5/474 (1%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 + LVW R DLR+ DN AL AC + + VIA++ TP QW+ H ++ Q+ I L+ + Sbjct: 1 MKLVWFRRDLRVKDNVALTEACKSGE-PVIAIYYETPVQWKAHALAPMQADLIQRRLVTL 59 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128 ++ L I + + D + L C Q ++ +F R YE +EV RD + L Sbjct: 60 RQELETLNIPLLFRSVDRYKDINQSLAQLCQQYQIADIFCTRDYETDEVDRDNAIAGMLS 119 Query: 129 HRVIC-KSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187 FD + PG + N A Y+V+TPF+KA I Q DL + P+ T Sbjct: 120 LTGTTLHRFDYKCIFAPGMVTNGAGNTYRVFTPFKKAWITQATQLDLSPIGAPSPVKTDA 179 Query: 188 VTPSNIPRFFDYPF---QAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244 +T + + + F Q +PI + + LR FC+ +V +Y RD PAI GTSQ Sbjct: 180 LTSALLRQPCQIAFRYPQCDSVGWPIDDSAIIQRLRDFCRYRVDHYQATRDFPAIPGTSQ 239 Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304 LSPYL+IG +SPRQC RL E + + K GA WL+ELIWREFY+H+ A Y V G Sbjct: 240 LSPYLAIGAISPRQCLARLLAEVPNCMEKDAGGAHVWLSELIWREFYQHIAAAYIDVSKG 299 Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364 K F WT+ IEWN+D Q WKQG TGFPI+DAAMRQLN GWMHNRLRMI ASFLVKD Sbjct: 300 KAFQDWTDNIEWNRDELQFQRWKQGKTGFPIVDAAMRQLNDTGWMHNRLRMIVASFLVKD 359 Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424 L +DWR GE YFMS+L+DGD A+NNGGWQW+ASTG D+ PYFR+FNP Q K+FDP F Sbjct: 360 LHIDWRWGERYFMSKLIDGDFAANNGGWQWSASTGTDAQPYFRVFNPASQSKKFDPNVRF 419 Query: 425 IRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478 IR WL EL +VP +H PH W +K + L+YP PIVDHK A + + AK Sbjct: 420 IRRWLKELESVPDSALHTPHIWAEKKGIELSYPAPIVDHKTARISAIEMFEMAK 473 >gi|302185909|ref|ZP_07262582.1| deoxyribodipyrimidine photolyase [Pseudomonas syringae pv. syringae 642] Length = 482 Score = 468 bits (1205), Expect = e-130, Method: Composition-based stats. Identities = 193/473 (40%), Positives = 275/473 (58%), Gaps = 7/473 (1%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 + L+WLR+DLR DN AL AA +AV++ +P QWR H + + F +L+++ Sbjct: 1 MQLIWLRSDLRAQDNTALTAAMERG--PTLAVYLLSPAQWRSHDDADCKVDFWLRNLVEL 58 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128 +++L + + + +D + E L C Q +V L N++Y INE RRD+ ++K ++ Sbjct: 59 EQALGELNVPLLIREADTWDQAPEVLAKLCTQFKVEGLHLNQEYGINETRRDQAVQKAME 118 Query: 129 HRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187 + S+ D +L PGSIL ++V+T F+K + +A + P + Sbjct: 119 KAGVHFNSYLDQLLFKPGSILTKTGNYFQVFTQFKKVCYTRMHEAMPHPIRTPKAQPAQS 178 Query: 188 V---TPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244 + T + + F P +A+ ++P GE A + F E++ YY +RD PA GTSQ Sbjct: 179 IKSDTVPDQVKGFATPSKALRDLWPAGEAEARRRMDAFADEQISYYKTERDFPAKPGTSQ 238 Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304 LS YL+ GV+SPRQC + G +W+NEL+WREFY+H + YP V Sbjct: 239 LSAYLAAGVISPRQCLHAALASNQGEFETGDVGTVTWINELLWREFYKHTLVGYPRVSRH 298 Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364 + F P TE ++W L+AW++ TG PIIDAAMRQL GWMHNRLRM+ A FL K+ Sbjct: 299 RAFRPETEALKWRDAPEELRAWQEARTGLPIIDAAMRQLLETGWMHNRLRMVVAMFLTKN 358 Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424 LL+DWR GE +FM L+DGDLASNNGGWQW++STG DS PYFRIFNP Q +RFDP+G F Sbjct: 359 LLIDWREGERFFMRHLIDGDLASNNGGWQWSSSTGTDSAPYFRIFNPLSQSERFDPEGVF 418 Query: 425 IRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477 I+ WLPEL ++ + IH P D + +YP PIVD K+ L + A Sbjct: 419 IKRWLPELADMNKKQIHNPSLIGDLFGAA-DYPKPIVDLSKSRARALAAFKAL 470 >gi|145300128|ref|YP_001142969.1| deoxyribodipyrimidine photolyase [Aeromonas salmonicida subsp. salmonicida A449] gi|142852900|gb|ABO91221.1| deoxyribodipyrimidine photolyase [Aeromonas salmonicida subsp. salmonicida A449] Length = 473 Score = 468 bits (1205), Expect = e-130, Method: Composition-based stats. Identities = 208/475 (43%), Positives = 281/475 (59%), Gaps = 6/475 (1%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 + LVW RNDLR+ DN AL AC + +V A+F+ +P QW+QH ++ + F+ A + ++ Sbjct: 1 MKLVWFRNDLRLADNPALRHACAEA-GEVAALFVISPTQWQQHKMAPIRQQFLLAQVDEL 59 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128 K+L+ GI + F + L S + V++L+ N+ EI+E RRD + L Sbjct: 60 GKALAALGIPLHLLRVETFAEMPTALASLSRELGVSQLYANQAIEIDEQRRDLAVSAMLA 119 Query: 129 HR-VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187 + V C F+ +LPPG +L + +M+KV+TPF +A ++ L + PA R Sbjct: 120 EQEVSCHWFNGCCVLPPGRVLTGSGEMFKVFTPFSRAWLKALEEDGFVIHRAPAPRAEPL 179 Query: 188 VTPSNIPRFFDYPFQA---IDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244 R + Y DP +P+GE A L F + V Y E RD PA GTS Sbjct: 180 PWQPLTEREWSYGALGEVTPDPRWPVGEAEAQRRLHAFLEPAVLDYEETRDFPAQAGTSI 239 Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304 LSPYL+ G++SPRQC L++ F WLNEL+WREFYRHL+ P++ M Sbjct: 240 LSPYLAAGIISPRQCVGVLQQRLGHRPQSKAQPGFVWLNELVWREFYRHLLVLVPTLSMN 299 Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364 PF P T + W+ D AW +G TG+PI+DAAMR L+ GWMHNRLRMI ASFL KD Sbjct: 300 LPFKPETATLPWSWDPVAFAAWCEGRTGYPIVDAAMRCLHATGWMHNRLRMIVASFLTKD 359 Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424 L + WR+GE+YFMSQL+DGDLA+NNGGWQWAA TG D+ PYFR+FNPT QG+RFDPQG F Sbjct: 360 LHIHWRLGEDYFMSQLIDGDLAANNGGWQWAAGTGADAAPYFRVFNPTTQGQRFDPQGDF 419 Query: 425 IRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479 IR W+ EL ++P Y+H PH WL YP P+VDH A + + +K Sbjct: 420 IRTWVTELADIPAAYVHQPHDWLRLKG-GRGYPAPMVDHALARVKAIEMFRNLEK 473 >gi|289678393|ref|ZP_06499283.1| deoxyribodipyrimidine photolyase [Pseudomonas syringae pv. syringae FF5] Length = 482 Score = 468 bits (1204), Expect = e-130, Method: Composition-based stats. Identities = 194/473 (41%), Positives = 274/473 (57%), Gaps = 7/473 (1%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 + L+WLR+DLR DN AL AA +AV++ +P QWR H + + F +L+++ Sbjct: 1 MQLIWLRSDLRAQDNTALTAAMERG--PTLAVYLLSPAQWRSHDDADCKVDFWLRNLVEL 58 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128 +K+L + + ++D + E L C Q +V L N++Y INE RRD+ ++K ++ Sbjct: 59 EKALGALNVPLLIREADSWDQAPEVLAKLCTQFKVEGLHLNQEYGINETRRDQAVQKAME 118 Query: 129 HRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187 + S+ D +L PGSIL ++V+T F+K L +A + P + Sbjct: 119 KAGVHFNSYLDQLLFKPGSILTKTGNYFQVFTQFKKVCYTRLHEAMPYPVRTPKAQPAQS 178 Query: 188 VTPS---NIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244 + + + F P +A+ ++P GE A + F E++ YY +RD PA GTSQ Sbjct: 179 IKSDVVPDQVKGFAMPSKALRDLWPAGEAEARRRMDTFADEQISYYKTERDFPAKPGTSQ 238 Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304 LS YL+ GV+SPRQC + G +W+NEL+WREFY+H + YP V Sbjct: 239 LSAYLAAGVISPRQCLHAALASNQGEFETGDVGTVTWINELLWREFYKHTLVGYPRVSRH 298 Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364 + F P TE ++W L+AW++ TG PIIDAAMRQL GWMHNRLRM+ A FL K+ Sbjct: 299 RAFRPETEALKWRDAPEELRAWQEARTGLPIIDAAMRQLLETGWMHNRLRMVVAMFLTKN 358 Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424 LL+DWR GE +FM L+DGDLASNNGGWQW++STG DS PYFRIFNP Q +RFDP+G F Sbjct: 359 LLIDWREGERFFMRHLIDGDLASNNGGWQWSSSTGTDSAPYFRIFNPLSQSERFDPEGVF 418 Query: 425 IRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477 I+ WLPEL ++ + IH P D + +YP PIVD K+ L + A Sbjct: 419 IKRWLPELADMNKKQIHDPSLIGDLFGAA-DYPKPIVDLSKSRARALAAFKAL 470 >gi|330941669|gb|EGH44445.1| deoxyribodipyrimidine photolyase [Pseudomonas syringae pv. pisi str. 1704B] Length = 482 Score = 467 bits (1201), Expect = e-129, Method: Composition-based stats. Identities = 194/473 (41%), Positives = 274/473 (57%), Gaps = 7/473 (1%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 + L+WLR+DLR DN AL AA +AV++ +P QWR H + + F +L+++ Sbjct: 1 MQLIWLRSDLRAQDNTALTAAMERG--PTLAVYLLSPAQWRSHDDADCKVDFWLRNLVEL 58 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128 +K+L + + ++D + E L C Q +V L N++Y INE RRD+ ++K ++ Sbjct: 59 EKALGALNVPLLIREADSWDQAPEVLAKLCTQFKVEGLHLNQEYGINETRRDQAVQKAME 118 Query: 129 HRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187 + S+ D +L PGSIL ++V+T F+K L +A + P + Sbjct: 119 KAGVHFNSYLDQLLFKPGSILTKTGNYFQVFTQFKKVCYTRLHEAMPHPVRTPKAQPAQS 178 Query: 188 VTPS---NIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244 + + + F P +A+ ++P GE A + F E++ YY +RD PA GTSQ Sbjct: 179 IKSDAVPDQVKGFATPSKALRDLWPAGEAEARRRMDAFADEQISYYKTERDFPAKPGTSQ 238 Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304 LS YL+ GV+SPRQC + G +W+NEL+WREFY+H + YP V Sbjct: 239 LSAYLAAGVISPRQCLHAALASNQGEFETGDVGTVTWINELLWREFYKHTLVGYPRVSRH 298 Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364 + F P TE ++W L+AW++ TG PIIDAAMRQL GWMHNRLRM+ A FL K+ Sbjct: 299 RAFRPETEALKWRDAPEELRAWQEARTGLPIIDAAMRQLLETGWMHNRLRMVVAMFLTKN 358 Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424 LL+DWR GE +FM L+DGDLASNNGGWQW++STG DS PYFRIFNP Q +RFDP+G F Sbjct: 359 LLIDWREGERFFMRHLIDGDLASNNGGWQWSSSTGTDSAPYFRIFNPLSQSERFDPEGVF 418 Query: 425 IRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477 I+ WLPEL ++ + IH P D + +YP PIVD K+ L + A Sbjct: 419 IKRWLPELADMNKKQIHDPSLIGDLFGAA-DYPKPIVDLSKSRARALAAFKAL 470 >gi|66044214|ref|YP_234055.1| deoxyribodipyrimidine photolyase [Pseudomonas syringae pv. syringae B728a] gi|63254921|gb|AAY36017.1| Deoxyribodipyrimidine photolyase [Pseudomonas syringae pv. syringae B728a] Length = 482 Score = 466 bits (1200), Expect = e-129, Method: Composition-based stats. Identities = 195/473 (41%), Positives = 274/473 (57%), Gaps = 7/473 (1%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 + L+WLR+DLR DN AL AA +AV++ +P QWR H + + F +L+++ Sbjct: 1 MQLIWLRSDLRAQDNTALTAAMERG--PTLAVYLLSPAQWRSHDDADCKVDFWLRNLVEL 58 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL- 127 +K+L + + + +D + E L + C Q +V L N++Y INE RRD+ ++K + Sbjct: 59 EKALGELNVPLLIREADTWDQAPEVLATLCTQFKVEGLHLNQEYGINETRRDQAVQKAMG 118 Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187 + V S+ D +L PGSIL ++V+T F+K L +A + P + Sbjct: 119 KAGVHFNSYLDQLLFKPGSILTKTGNYFQVFTQFKKVCYTRLHEAMPHPVRTPQAQAAQS 178 Query: 188 VTPS---NIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244 + + F P +A+ ++P GE A + F E++ YY +RD PA GTSQ Sbjct: 179 IKSDAVPKQVKGFATPSKALRDLWPAGEAEARRRMDAFAAEQISYYKTERDFPAKPGTSQ 238 Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304 LS YL+ GV+SPRQC + G +W+NEL+WREFY+H + YP V Sbjct: 239 LSAYLAAGVISPRQCLHAALASNQGEFETGDVGTVTWINELLWREFYKHTLVGYPRVSRH 298 Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364 + F P TE ++W L+AW++ TG PIIDAAMRQL GWMHNRLRM+ A FL K+ Sbjct: 299 RAFRPETEALKWRDAPEELRAWQEARTGLPIIDAAMRQLLETGWMHNRLRMVVAMFLTKN 358 Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424 LL+DWR GE +FM L+DGDLASNNGGWQW++STG DS PYFRIFNP Q +RFDP+G F Sbjct: 359 LLIDWREGERFFMRHLIDGDLASNNGGWQWSSSTGTDSAPYFRIFNPLSQSERFDPEGVF 418 Query: 425 IRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477 I+ WLPEL ++ + IH P D + +YP PIVD K+ L + A Sbjct: 419 IKRWLPELADMNKKQIHDPSLIGDLFGAA-DYPKPIVDLSKSRARALAAFKAL 470 >gi|330975589|gb|EGH75655.1| deoxyribodipyrimidine photolyase [Pseudomonas syringae pv. aptata str. DSM 50252] Length = 482 Score = 466 bits (1200), Expect = e-129, Method: Composition-based stats. Identities = 193/473 (40%), Positives = 273/473 (57%), Gaps = 7/473 (1%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 + L+WLR+DLR DN AL AA +AV++ +P QWR H + + F +L+++ Sbjct: 1 MQLIWLRSDLRAQDNTALTAAMERG--PTLAVYLLSPAQWRSHDDADCKVDFWLRNLVEL 58 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128 +K+L + + ++D + E L C Q +V L N++Y INE RRD+ ++K ++ Sbjct: 59 EKALGALNVPLLIREADSWDQAPEVLAKLCAQFKVEGLHLNQEYGINETRRDQAVQKAME 118 Query: 129 HRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187 + S+ D +L PGSIL ++V+T F+K L +A + P + Sbjct: 119 KAGVHFNSYLDQLLFKPGSILTKTGNYFQVFTQFKKVCYTRLHEAMPHPVRTPKAQPAQS 178 Query: 188 VTPS---NIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244 + + + F P + + ++P GE A + F E++ YY +RD PA GTSQ Sbjct: 179 IKSDAVPDQVKGFATPSKTLRDLWPAGEAEARRRMDAFADEQISYYKTERDFPAKPGTSQ 238 Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304 LS YL+ GV+SPRQC + G +W+NEL+WREFY+H + YP V Sbjct: 239 LSAYLAAGVISPRQCLHAALASNQGEFETGDVGTVTWINELLWREFYKHTLVGYPRVSRH 298 Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364 + F P TE ++W L+AW++ TG PIIDAAMRQL GWMHNRLRM+ A FL K+ Sbjct: 299 RAFRPETEALKWRDAPEELRAWQEARTGLPIIDAAMRQLLETGWMHNRLRMVVAMFLTKN 358 Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424 LL+DWR GE +FM L+DGDLASNNGGWQW++STG DS PYFRIFNP Q +RFDP+G F Sbjct: 359 LLIDWREGERFFMRHLIDGDLASNNGGWQWSSSTGTDSAPYFRIFNPLSQSERFDPEGVF 418 Query: 425 IRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477 I+ WLPEL ++ + IH P D + +YP PIVD K+ L + A Sbjct: 419 IKRWLPELADMNKKQIHDPSLIGDLFGAA-DYPKPIVDLSKSRARALAAFKAL 470 >gi|330969367|gb|EGH69433.1| deoxyribodipyrimidine photolyase [Pseudomonas syringae pv. aceris str. M302273PT] Length = 482 Score = 466 bits (1199), Expect = e-129, Method: Composition-based stats. Identities = 194/473 (41%), Positives = 274/473 (57%), Gaps = 7/473 (1%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 + L+WLR+DLR DN AL AA +AV++ +P QWR H + + F +L+++ Sbjct: 1 MQLIWLRSDLRAQDNTALTAAMERG--PTLAVYLLSPAQWRSHDDADCKVDFWLRNLVEL 58 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128 +K+L + + + +D + E L + C Q +V L N++Y INE RRD+ ++K ++ Sbjct: 59 EKALGELNVPLLIREADTWDQAPEVLATLCTQFKVEGLHLNQEYGINETRRDQAVQKAME 118 Query: 129 HRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187 + S+ D +L PGSIL ++V+T F+K L +A + P + Sbjct: 119 KAGVHFNSYLDQLLFKPGSILTKTGNYFQVFTQFKKVCYTRLHEAMPHPVRTPQAQAAQS 178 Query: 188 VTPS---NIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244 + + F P +A+ ++P GE A + F E++ YY +RD PA GTSQ Sbjct: 179 MKSDAVPEQVKGFATPSKALRDLWPAGEAEARRRMDAFADEQISYYKTERDFPAKPGTSQ 238 Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304 LS YL+ GV+SPRQC + G +W+NEL+WREFY+H + YP V Sbjct: 239 LSAYLAAGVISPRQCLHAALASNQGEFETGDVGTVTWINELLWREFYKHTLVGYPRVSRH 298 Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364 + F P TE ++W L+AW++ TG PIIDAAMRQL GWMHNRLRM+ A FL K+ Sbjct: 299 RAFRPETEALKWRDAPEELRAWQEARTGLPIIDAAMRQLLETGWMHNRLRMVVAMFLTKN 358 Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424 LL+DWR GE +FM L+DGDLASNNGGWQW++STG DS PYFRIFNP Q +RFDP+G F Sbjct: 359 LLIDWREGERFFMRHLIDGDLASNNGGWQWSSSTGTDSAPYFRIFNPLSQSERFDPEGVF 418 Query: 425 IRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477 I+ WLPEL ++ + IH P D + +YP PIVD K+ L + A Sbjct: 419 IKRWLPELADMNKKQIHDPSLIGDLFGAA-DYPKPIVDLSKSRARALAAFKAL 470 >gi|90411278|ref|ZP_01219290.1| Deoxyribodipyrimidine photolyase [Photobacterium profundum 3TCK] gi|90327807|gb|EAS44138.1| Deoxyribodipyrimidine photolyase [Photobacterium profundum 3TCK] Length = 488 Score = 464 bits (1194), Expect = e-128, Method: Composition-based stats. Identities = 228/475 (48%), Positives = 294/475 (61%), Gaps = 10/475 (2%) Query: 10 HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69 L+W R+DLRITDN AL ACH S VIA++IATP+QW +H ++ Q I LL +Q Sbjct: 7 QLIWFRSDLRITDNTALIHACH-SGRPVIALYIATPKQWYEHTVAPIQIDLIQRRLLVLQ 65 Query: 70 KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL-Q 128 + L I + ++ E + + Q ++ +F N+Q E NE +RD + + L + Sbjct: 66 QQLHTLNIPLLICEVDDYTSIPELMKNLVNQHHISHVFCNKQDEWNEKQRDHSVNQALVE 125 Query: 129 HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188 +V FDDS + PG + +KV+TPFR+ + + P P + P+ Sbjct: 126 KQVKVSIFDDSCAIAPGRVKTKQGGTFKVFTPFRREWLNVYHSLLPEAQPAPQAVVLHPI 185 Query: 189 TPSNIPRF-----FDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS 243 T + + F YP + +P+ E + L+ FC EKV+ Y E RDIPAI GTS Sbjct: 186 TSELLAQSATSVSFSYP-EKDSAFWPVEEDDIRRQLQAFCLEKVHLYNEHRDIPAIDGTS 244 Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCM 303 LSPYL+IG LS RQC + L+ EF L + GAF WLNELIWREFYRHL Y + Sbjct: 245 CLSPYLAIGALSVRQCISILRSEFPHCLESSEQGAFIWLNELIWREFYRHLTESYGKLSR 304 Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363 +PF WT KI W L+ W+QG TGFPI+DAAM+QL GWMHNRLRMI ASFL K Sbjct: 305 NQPFHAWTTKIRWRSADDELKCWQQGETGFPIVDAAMKQLLATGWMHNRLRMIVASFLTK 364 Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423 DLL+DWR GE++FMSQL+DGD ASNNGGWQWAASTG D+ PYFR+FNPT+QG+RFDP G Sbjct: 365 DLLIDWREGEKWFMSQLIDGDFASNNGGWQWAASTGTDAQPYFRVFNPTLQGQRFDPNGD 424 Query: 424 FIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478 FIR W+ EL +VP +YIH PH W N +LNYP PIVDHK+A + + AK Sbjct: 425 FIRKWIKELKDVPNKYIHTPHLWDGAN--TLNYPKPIVDHKQARLLAIETFKQAK 477 >gi|149377119|ref|ZP_01894869.1| Deoxyribodipyrimidine photolyase [Marinobacter algicola DG893] gi|149358655|gb|EDM47127.1| Deoxyribodipyrimidine photolyase [Marinobacter algicola DG893] Length = 466 Score = 464 bits (1193), Expect = e-128, Method: Composition-based stats. Identities = 189/471 (40%), Positives = 268/471 (56%), Gaps = 8/471 (1%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 LVW RNDLRI DN AL AAC +V A FI TP QW++H S + F+ + Sbjct: 2 TQLVWFRNDLRIADNAALTAACKQ-QQQVQACFIVTPTQWQEHDWSPARVQFVLDHANAL 60 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128 + L++ GI + + F DS+E L+ +C ++ + + +N +Y +NE RRDK ++ L Sbjct: 61 SEELAKLGISLSFITATTFADSVEKLEKFCRRESIRHVHFNEEYGVNERRRDKAVKHALD 120 Query: 129 H-RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187 V + D + P G+IL + Y V+TPF + + +A P+P + Sbjct: 121 EIGVAVNKYRDQTVAPVGNILTQQGEPYSVFTPFSRRWRSWIDEAQPTLFPIPKP-VGDT 179 Query: 188 VTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSP 247 V P + + GE A L +F + Y RD+P++ GTS LSP Sbjct: 180 VEPPHYEGLSKSFDNPPPRLVETGEDAAHRQLEQFLDDHAGDYKNLRDLPSVDGTSLLSP 239 Query: 248 YLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPF 307 YL+ GVLS +QC ++ + + G +W NE+ WR+FY +++ YP + M + F Sbjct: 240 YLANGVLSGKQCLIAARQN--QGMGGNQEGLVTWTNEIAWRDFYINILYHYPRISMHRAF 297 Query: 308 IPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLV 367 P TE ++WN +AWK G TG PI+DAAMRQLN GWMHNRLRMITA FL K+L + Sbjct: 298 KPETEALKWNTPGENFEAWKAGNTGIPIVDAAMRQLNQTGWMHNRLRMITAMFLTKNLFI 357 Query: 368 DWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRH 427 DWR+GE YFMS+L+DG LASNNGGWQW+ASTG D+ PYFR+FNP Q +RFDP G FIR Sbjct: 358 DWRLGEAYFMSKLVDGFLASNNGGWQWSASTGTDAAPYFRVFNPATQSERFDPDGEFIRK 417 Query: 428 WLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478 ++PE+ + + IH P + YP P+VD K++ + ++ A K Sbjct: 418 YVPEIAKLDNKRIHQPWV---GGVIPGGYPRPVVDLKESRKEAIAKFQALK 465 >gi|293609792|ref|ZP_06692094.1| deoxyribodipyrimidine photolyase [Acinetobacter sp. SH024] gi|292828244|gb|EFF86607.1| deoxyribodipyrimidine photolyase [Acinetobacter sp. SH024] Length = 480 Score = 463 bits (1192), Expect = e-128, Method: Composition-based stats. Identities = 192/479 (40%), Positives = 272/479 (56%), Gaps = 15/479 (3%) Query: 10 HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69 L+W R DLR+ D+ AL+ A I + I +PEQW+ H + + +F L Q++ Sbjct: 6 QLIWFRQDLRVRDHAALWHASQ--QGPCIGLIILSPEQWKMHHDAPIKINFYLRQLQQLK 63 Query: 70 KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH 129 K L Q I + D +++ Q + ++ N + +NE++RDK ++ L Sbjct: 64 KELEQLNIPLIIQVIPYWKDIADYIGELSTQLNIENVYSNIEIGVNELKRDKTVQDFLNQ 123 Query: 130 RV-ICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNL-VQADLRSLPVPAIRLTGP 187 + F D + P SI N + Q Y+V+ F+KA L + + P+P + + P Sbjct: 124 QGKELFLFHDRTIFPLCSIRNQSQQPYQVFGAFKKACYSKLDISGLPQCYPIPEKQSSYP 183 Query: 188 VTPSNIPRFFDYPFQAI---------DPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPA 238 + S I +A ++P GE AL L F K+++ Y +RD P Sbjct: 184 ASFSKINSLTLEDIEAFFDPSVSKEQQGLWPAGENFALEQLDIFIKDRLSDYKLERDFPN 243 Query: 239 IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFY 298 ++GTSQLSPYL+IG+LS RQC L G +WL+ELIWREFY+H++ + Sbjct: 244 VRGTSQLSPYLNIGILSIRQCLQALFRAEHGNFHLTNEGQQTWLDELIWREFYQHILFDF 303 Query: 299 PSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITA 358 P V PF T+KI+WN + L AW+ G TG PIIDA MRQL GWMHNR+RMITA Sbjct: 304 PHVSKHIPFKKDTQKIKWNHNPEHLIAWQTGQTGIPIIDAGMRQLLKTGWMHNRVRMITA 363 Query: 359 SFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRF 418 FL K+LL+DWR+GE++FM L+DGDLA+NNGGWQW ASTG D+VPYFRIFNP Q K+F Sbjct: 364 MFLCKNLLIDWRVGEQWFMEHLIDGDLAANNGGWQWCASTGTDAVPYFRIFNPIAQSKKF 423 Query: 419 DPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477 DP G +IR W+ EL ++ + IH P+S K ++ LNYP PIVD K+ + + + Sbjct: 424 DPNGDYIRQWVEELAHLDNKAIHEPYS--TKTNIQLNYPKPIVDLKETRLKAIETFKSI 480 >gi|323496501|ref|ZP_08101559.1| deoxyribodipyrimidine photolyase [Vibrio sinaloensis DSM 21326] gi|323318778|gb|EGA71731.1| deoxyribodipyrimidine photolyase [Vibrio sinaloensis DSM 21326] Length = 474 Score = 463 bits (1192), Expect = e-128, Method: Composition-based stats. Identities = 218/474 (45%), Positives = 291/474 (61%), Gaps = 10/474 (2%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 + LVW R DLR DN A AA NS+ V+A FIATP+ W QH ++ Q+ I L ++ Sbjct: 1 MRLVWFRRDLRTIDNTAFIAAI-NSNEPVVAAFIATPDSWSQHHMAPMQADLIKRRLFEL 59 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL- 127 Q L+ G+ Y + S++ S++ + ++ Q VT + N++YEINEVRRD E+ L Sbjct: 60 QNDLASLGVPLIYAETSDYASSVDVVCNWVKQYSVTSVHLNKEYEINEVRRDDKAEQALT 119 Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187 + V+ DD PGS++N +KV+TP+++A +Q L Q ++ V A+ Sbjct: 120 RLDVVLHRHDDKCQFIPGSVVNKQGHYFKVFTPYKRAYLQKLEQFPVQVQKVTAVNGQKA 179 Query: 188 VTPSNIPRFFDYPFQ---AIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244 D F+ + + + L LR F KE Y ++RD PAI+GTS+ Sbjct: 180 KVDECDLFSKDCSFRYPTEESQAYQVSTEQILDQLRSFVKEHSDDYQDERDFPAIEGTSR 239 Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304 LSPYL+IG LS RQC RL + L G +WL+ELIWREFY+HL+ F P + G Sbjct: 240 LSPYLAIGALSVRQCMARLLYQQTAPL---SEGRQTWLSELIWREFYQHLLYFEPKLSRG 296 Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364 + F+PW + W ++AW+QG TG+PI+DAAMRQLN GWMHNRLRMI ASFLVKD Sbjct: 297 ESFLPWGVHLRWENCPRRIKAWQQGQTGYPIVDAAMRQLNQTGWMHNRLRMIVASFLVKD 356 Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424 L VDWR+GE+YFMS+L+DG+ A+NNGGWQW ASTG D PYFRIFNPT QG+RFDP+G F Sbjct: 357 LQVDWRVGEDYFMSKLVDGEYAANNGGWQWCASTGCDGQPYFRIFNPTTQGERFDPKGEF 416 Query: 425 IRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478 +R W+PEL ++P + IH P WL +YP PIVDHK TL Y AK Sbjct: 417 VRRWVPELADLPDKQIHQPSKWLSVK--GSSYPAPIVDHKVQREITLANYKNAK 468 >gi|330502050|ref|YP_004378919.1| deoxyribodipyrimidine photo-lyase type I [Pseudomonas mendocina NK-01] gi|328916336|gb|AEB57167.1| deoxyribodipyrimidine photo-lyase type I [Pseudomonas mendocina NK-01] Length = 478 Score = 463 bits (1192), Expect = e-128, Method: Composition-based stats. Identities = 191/477 (40%), Positives = 271/477 (56%), Gaps = 7/477 (1%) Query: 10 HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69 L+W R+DLR+ DN AL A + IA+++ TP+QW++H + + F +L ++ Sbjct: 3 QLMWFRSDLRVQDNTALSQAMNRGAT--IALYLITPDQWQRHDDAPCKVDFWLRNLRELS 60 Query: 70 KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL-Q 128 K+L++ + QC ++ D + C + + + N +Y INE RD+ + L Q Sbjct: 61 KALAELNVPLLVRQCHDWGDVPVQVADVCQEHTICAVHVNEEYGINESLRDRRVSAYLSQ 120 Query: 129 HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188 + S D +L PGS+L + ++VY+ FRK + L A + P + V Sbjct: 121 QAIAWHSHLDQILFKPGSVLTRSGGYFQVYSQFRKVCYERLHSALPALVTQPKAQTPMDV 180 Query: 189 TPS---NIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245 + + F P +++ ++P GEQ AL L +F E+V +Y ++RD PA GTSQL Sbjct: 181 KSDIIPDSVKGFATPSESLRLLWPAGEQAALQRLERFADEQVAFYKDERDFPAKPGTSQL 240 Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305 S YL+ G+LSPRQC + G +W+NEL+WREFY+H++ YP V + Sbjct: 241 SAYLAAGILSPRQCLHAALSANRGEFDSGNQGVITWINELLWREFYKHILVGYPRVSRHR 300 Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365 F P TE + W L AW++G TG PIIDAAMRQL GWMHNRLRMI A FL K+L Sbjct: 301 AFRPETEAVPWRNAPEELAAWQEGRTGLPIIDAAMRQLLETGWMHNRLRMIVAMFLTKNL 360 Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425 L+DWR GE +FM L+DGDLA+NNGGWQW+ASTG D+ PYFRIFNP Q ++FDP G FI Sbjct: 361 LIDWREGERFFMRHLIDGDLAANNGGWQWSASTGTDAAPYFRIFNPISQSQKFDPDGQFI 420 Query: 426 RHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQSL 482 R W+PEL + + IH P S L YP PIVD ++ L + + + Sbjct: 421 RQWVPELAGLNKRDIHDP-SALGGLFAPSGYPRPIVDLARSRERALAAFKNLSAREV 476 >gi|237807886|ref|YP_002892326.1| Deoxyribodipyrimidine photo-lyase [Tolumonas auensis DSM 9187] gi|237500147|gb|ACQ92740.1| Deoxyribodipyrimidine photo-lyase [Tolumonas auensis DSM 9187] Length = 465 Score = 462 bits (1189), Expect = e-128, Method: Composition-based stats. Identities = 213/468 (45%), Positives = 287/468 (61%), Gaps = 6/468 (1%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 LVW R+DLR+ D+ ALYAA + + + A++ TPEQW++ ++ ++ I L Q+ Sbjct: 2 TSLVWFRDDLRVHDHPALYAASLHPE-PLQAIYFVTPEQWKKQDLAPVRADLIARQLNQL 60 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128 ++L+ GI F +++ L SYC Q V++LF NR I E+ RD ++++ Sbjct: 61 GEALAALGIPFSVLTVADYQQIPARLASYCQQHEVSQLFVNRDIGIYELARDLSVQQQCD 120 Query: 129 HRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187 I + FD + PGS+L + +M+KV+TPF KA ++ L + P P+ R Sbjct: 121 ATGIRVQWFDARCVFAPGSVLTGSKEMFKVFTPFSKAWLKKLAAEGYQVWPKPSARGG-- 178 Query: 188 VTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSP 247 S DYP + +P+GE L L+ FC EK+ Y EQRD PA GTS++SP Sbjct: 179 -ILSWSSVSIDYP-RVDSSDWPVGEAAVLQQLQDFCAEKLRQYDEQRDFPACPGTSRISP 236 Query: 248 YLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPF 307 YL++G++S RQC ++ L + + F WLNELIWREFY+HL+ +P V K F Sbjct: 237 YLTLGIISVRQCLAAIEAALGQLPFERGAPGFVWLNELIWREFYQHLLVAFPHVSKHKAF 296 Query: 308 IPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLV 367 P T+ I W D AW +G TG+PI+DAAMR LN GWMHNRLRMI ASFL KDL + Sbjct: 297 KPETDHIRWLWDDARFTAWCEGKTGYPIVDAAMRCLNQTGWMHNRLRMIVASFLTKDLHI 356 Query: 368 DWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRH 427 DWR+GE YFM L+DG+LA+NNGGWQWAASTG D+ PYFRIFNPT QG+RFD QG FI+ Sbjct: 357 DWRLGERYFMQHLIDGELAANNGGWQWAASTGADAAPYFRIFNPTTQGQRFDEQGQFIKQ 416 Query: 428 WLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYY 475 WLPEL VP +YIH PH WL D +YP PIVDH ++ L + Sbjct: 417 WLPELELVPAKYIHTPHDWLKVFDPQDSYPAPIVDHSESRTIALALFQ 464 >gi|299769190|ref|YP_003731216.1| deoxyribodipyrimidine photo-lyase [Acinetobacter sp. DR1] gi|298699278|gb|ADI89843.1| deoxyribodipyrimidine photo-lyase [Acinetobacter sp. DR1] Length = 480 Score = 461 bits (1186), Expect = e-127, Method: Composition-based stats. Identities = 192/479 (40%), Positives = 273/479 (56%), Gaps = 15/479 (3%) Query: 10 HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69 L+W R DLR+ D+ AL+ AC + I + I +PEQW+ H + + +F L Q++ Sbjct: 6 QLIWFRQDLRVRDHAALWHACQQGPS--IGLVILSPEQWKIHHDAPIKINFYLRQLQQLK 63 Query: 70 KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH 129 K L + I + D +++ Q + ++ N + +NE++RDK +++ L Sbjct: 64 KELEKLNIPLIIQVIPYWKDIADYICELTHQLHIENVYSNIEVGVNELKRDKTVQQALNQ 123 Query: 130 RV-ICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNL-VQADLRSLPVPAIRLTGP 187 + F D + P SI N + Q Y+V+ F+KA L + + P+P + + P Sbjct: 124 QGKELFLFHDRTIFPLRSIRNQSQQPYQVFGAFKKACYSKLDISGLPQCYPIPEKQKSNP 183 Query: 188 VTPSNIPRFFDYPFQAI---------DPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPA 238 + SNI +A ++P GE AL L F + + Y +RD P Sbjct: 184 ESDSNIKSLSLEDIEAFFDSSISKDQQNLWPTGEGFALEQLDVFIENHLSDYKLERDFPN 243 Query: 239 IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFY 298 ++GTSQLSPYL++G+LS RQC L G +WL+EL+WREFY+H++ + Sbjct: 244 VKGTSQLSPYLNLGILSIRQCLQALFRTEHGNFHIANEGQQTWLDELLWREFYQHILFDF 303 Query: 299 PSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITA 358 P V PF T+KI+WN + L AW+ G TG PIIDA MRQL GWMHNR+RMITA Sbjct: 304 PHVSKHIPFKKDTQKIKWNHNPEHLTAWQTGQTGIPIIDAGMRQLQKTGWMHNRVRMITA 363 Query: 359 SFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRF 418 FL K+LL+DWRIGE++FM L+DGDLA+NNGGWQW ASTG D+VPYFRIFNP Q K+F Sbjct: 364 MFLCKNLLIDWRIGEQWFMEHLIDGDLAANNGGWQWCASTGTDAVPYFRIFNPIAQSKKF 423 Query: 419 DPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477 DP G +IR W+ EL ++ + IH P+S K L LNYP PIVD K+ + + + Sbjct: 424 DPNGDYIRQWVDELADLDNKMIHEPYS--SKTPLQLNYPKPIVDLKETRMKAIETFKSI 480 >gi|330900868|gb|EGH32287.1| deoxyribodipyrimidine photolyase [Pseudomonas syringae pv. japonica str. M301072PT] Length = 482 Score = 461 bits (1185), Expect = e-127, Method: Composition-based stats. Identities = 194/473 (41%), Positives = 272/473 (57%), Gaps = 7/473 (1%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 + L+WLR+DLR DN AL AA +AV++ +P QWR H + + F +L+++ Sbjct: 1 MQLIWLRSDLRAQDNTALTAAMERG--PTLAVYLLSPAQWRSHDDADCKVDFWLRNLVEL 58 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128 +K+L + + ++D + E L C Q +V L N++Y INE RRD+ + K ++ Sbjct: 59 EKALGALNVPLLIREADSWDQAPEVLAKLCTQFKVEGLHLNQEYGINETRRDQAVHKAME 118 Query: 129 HRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187 + S+ D +L PGSIL ++V+T F+K L +A ++ P + Sbjct: 119 KAGVHFNSYLDQLLFKPGSILTKTGNYFQVFTQFKKVCYTRLHEAMPHTVRTPKAQPAQS 178 Query: 188 VTPS---NIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244 + + + F P A+ ++P GE A + F E++ YY +RD PA GTSQ Sbjct: 179 IKSDAIPDQAKGFATPSIALRDLWPAGEAEARRRMDAFADEQISYYKTERDFPAKPGTSQ 238 Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304 LS YL+ GV+SPRQC + G +W+NEL+WREFY+H + YP V Sbjct: 239 LSAYLAAGVISPRQCLHAALASNQGEFETGDVGTVTWINELLWREFYKHTLVGYPRVSRH 298 Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364 + F P TE + W L+AW++ TG PIIDAAMRQL GWMHNRLRM+ A FL K+ Sbjct: 299 RAFRPETEALNWRDAPEELRAWQEARTGLPIIDAAMRQLLETGWMHNRLRMVVAMFLTKN 358 Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424 LL+DWR GE +FM L+DGDLASNNGGWQW++STG DS PYFRIFNP Q +RFDP+G F Sbjct: 359 LLIDWREGERFFMRHLIDGDLASNNGGWQWSSSTGTDSAPYFRIFNPLSQSERFDPEGVF 418 Query: 425 IRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477 I+ WLPEL ++ + IH P D + +YP PIVD K+ L + A Sbjct: 419 IKRWLPELADMNKKQIHDPSLIGDLFGAA-DYPKPIVDLSKSRARALAAFKAL 470 >gi|325123018|gb|ADY82541.1| deoxyribodipyrimidine photolyase (photoreactivation), FAD-binding protein [Acinetobacter calcoaceticus PHEA-2] Length = 480 Score = 461 bits (1185), Expect = e-127, Method: Composition-based stats. Identities = 189/479 (39%), Positives = 273/479 (56%), Gaps = 15/479 (3%) Query: 10 HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69 L+W R DLR+ D+ AL+ A I + I +PEQW+ H + + +F L Q++ Sbjct: 6 QLIWFRQDLRVRDHAALWHASQ--QGPCIGLIILSPEQWQTHHDAPIKINFYLRQLQQLK 63 Query: 70 KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH 129 K L Q I + D +++ +Q + ++ N ++ +NE++RDK ++ L Sbjct: 64 KELEQLNIPLIIQVIPYWKDIADYIGELSIQLNIENVYSNIEFGVNELKRDKTVQDFLNQ 123 Query: 130 RV-ICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNL-VQADLRSLPVPAIRLTGP 187 + F D + P SI N + Q Y+V+ F+KA L + + P+P + + P Sbjct: 124 QGKELFLFHDRTIFPLCSIRNQSQQPYQVFGAFKKACYSKLDISGLPQCYPIPEKQSSYP 183 Query: 188 VTPSNIPRFFDYPFQAI---------DPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPA 238 + S I +A ++P GE AL L F K+ + Y +RD P Sbjct: 184 ASFSKINSLTLEDIEAFFDPSVSKEQQGLWPAGENFALEQLDIFIKDHLSDYKLERDFPN 243 Query: 239 IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFY 298 ++GTSQLSPYL+IG+LS RQC L G +WL+EL+WREFY+H++ + Sbjct: 244 VRGTSQLSPYLNIGILSIRQCLQALFRAEHGNFHLTNEGQQTWLDELLWREFYQHILFDF 303 Query: 299 PSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITA 358 P V PF T+KI+W+ + L AW+ G TG PIIDA MRQL GWMHNR+RMITA Sbjct: 304 PHVSKHIPFKKNTQKIKWSHNPEHLTAWQTGQTGIPIIDAGMRQLLKTGWMHNRVRMITA 363 Query: 359 SFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRF 418 FL K++L+DWR+GE++FM L+DGDLA+NNGGWQW ASTG D+VPYFRIFNP Q K+F Sbjct: 364 MFLCKNMLIDWRVGEQWFMEHLIDGDLAANNGGWQWCASTGTDAVPYFRIFNPIAQSKKF 423 Query: 419 DPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477 DP G +IR W+ EL ++ + IH P+S K ++ LNYP PIVD K+ + + + Sbjct: 424 DPNGDYIRQWVQELAHLDNKAIHEPYS--TKTNIQLNYPKPIVDLKETRLKAIETFKSI 480 >gi|62179298|ref|YP_215715.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|62126931|gb|AAX64634.1| deoxyribodipyrimidine photolyase (photoreactivation) [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] Length = 446 Score = 460 bits (1184), Expect = e-127, Method: Composition-based stats. Identities = 231/433 (53%), Positives = 308/433 (71%), Gaps = 4/433 (0%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M HLVW R DLR+ DN AL AAC ++ A+V+A++I+TP QW+ H ++ RQ+ FI A L Sbjct: 1 MPTHLVWFRRDLRLQDNLALAAACRDASARVLALYISTPAQWQAHDMAPRQAAFISAQLN 60 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 +Q +L++KGI +H+ ++F+ SIE + ++C Q V+ LFYN QY+ NE +RD +EK Sbjct: 61 ALQAALAEKGIPLLFHEVADFNASIETVKNFCRQHDVSHLFYNYQYQFNERQRDAAVEKT 120 Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 L VIC+ FDDSV+L PG+++ +MYKV+TPF+ A ++ L + +P P IR++G Sbjct: 121 LPS-VICEGFDDSVILAPGAVMTGNHEMYKVFTPFKNAWLKRLKEDIPPCVPAPKIRVSG 179 Query: 187 PVTPSNIPRFFDYPFQAIDP-MFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245 ++ P +YP QA D +FP+ E + LR+FC + Y +RD PA+ GTS+L Sbjct: 180 ALSTPLTPVSLNYPQQAFDAALFPVEENAVIAQLRQFCAQGADEYALRRDFPAVDGTSRL 239 Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305 S L+ G LSPRQC +RL E L WLNELIWREFYRHLM +YP++C + Sbjct: 240 SASLATGGLSPRQCLHRLLAEQPQALDGGPGSV--WLNELIWREFYRHLMTWYPALCKHQ 297 Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365 PFI WT+++ W ++SH QAW++G TG+PI+DAAMRQLN GWMHNRLRMITASFLVKDL Sbjct: 298 PFIRWTKRVAWQENSHYFQAWQKGETGYPIVDAAMRQLNATGWMHNRLRMITASFLVKDL 357 Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425 L+DWR+GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG+RFD G FI Sbjct: 358 LIDWRLGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGERFDRDGEFI 417 Query: 426 RHWLPELNNVPTQ 438 R WLP L ++P + Sbjct: 418 RQWLPALRDMPWK 430 >gi|312883049|ref|ZP_07742780.1| deoxyribodipyrimidine photolyase [Vibrio caribbenthicus ATCC BAA-2122] gi|309369209|gb|EFP96730.1| deoxyribodipyrimidine photolyase [Vibrio caribbenthicus ATCC BAA-2122] Length = 476 Score = 459 bits (1181), Expect = e-127, Method: Composition-based stats. Identities = 209/479 (43%), Positives = 286/479 (59%), Gaps = 12/479 (2%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 +++VW R DLR+ DN AL AC + + V+ V+ ATP+ W +H +SA Q+ IY L + Sbjct: 1 MNVVWFRRDLRVEDNTALIEACQSGE-PVVGVYFATPKTWERHSLSAIQADLIYRRLFAL 59 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128 Q L + I Y + ++ D +E + + LF+N+QYE +EV+RD + + L+ Sbjct: 60 QDDLRKLNIPLYYAEVDSYKDCVELIADVMTSSSASGLFFNKQYEFDEVQRDSAIVQLLK 119 Query: 129 H-RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187 V C + +D LPPGS+LN +KV+TPF++A +Q + L + T P Sbjct: 120 ESNVDCSAHEDKCFLPPGSVLNKQGGYFKVFTPFKRAYLQQMEVTPLNVIKAKKQSNTLP 179 Query: 188 VTPSNIPRFF--DYPF---QAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGT 242 + R F D PF + + + + LR+F ++KV Y E RD P++ T Sbjct: 180 TLDNTRLRLFSQDSPFSYPRVSSNNYKVETTEVIQALREFEEKKVKLYAENRDYPSVDAT 239 Query: 243 SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVC 302 S LSPYL++G+LS RQC R+ + G W +ELIWREFY+HL F P + Sbjct: 240 SILSPYLAVGILSIRQCMARV---MYQQQLPLSGGREVWQSELIWREFYQHLAYFEPKLS 296 Query: 303 MGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLV 362 G+ F PW E + W L+AWK G TG+PI+DAAM+QLN GWMHNRLRMI ASFL+ Sbjct: 297 KGESFNPWGEHLRWENSQVFLEAWKSGKTGYPIVDAAMKQLNETGWMHNRLRMIVASFLI 356 Query: 363 KDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQG 422 KDL +DWR+GE+YFMS+L+DGD +NNGGWQW +STG D PYFRIFNP QG+RFDP G Sbjct: 357 KDLHIDWRVGEQYFMSKLVDGDYPANNGGWQWCSSTGCDGQPYFRIFNPITQGERFDPDG 416 Query: 423 TFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481 FI WLP+L VP +++H P W + L YP PIVDHK TL+ Y AK+ S Sbjct: 417 RFIIRWLPQLAEVPKKFLHQPWKWSRASQLK--YPAPIVDHKVQRGITLDLYKQAKEYS 473 >gi|238920766|ref|YP_002934281.1| deoxyribodipyrimidine photo-lyase [Edwardsiella ictaluri 93-146] gi|238870335|gb|ACR70046.1| deoxyribodipyrimidine photo-lyase [Edwardsiella ictaluri 93-146] Length = 471 Score = 459 bits (1180), Expect = e-127, Method: Composition-based stats. Identities = 242/467 (51%), Positives = 316/467 (67%), Gaps = 3/467 (0%) Query: 12 VWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQKS 71 +WLR+DLR+TDN+AL+AAC + A+V+A+++ATP QW ++ RQ+ FI+ +LL +Q + Sbjct: 1 MWLRSDLRMTDNRALHAACADVRARVVALYVATPRQWLAQEMAPRQAQFIWQNLLALQVT 60 Query: 72 LSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHRV 131 L Q+ I ++ + CL++R LF NRQYE+NE RRD L L + Sbjct: 61 LGQRQIPLYCLSVDDYAAQARAVREVCLRERADALFVNRQYELNERRRDDALAAAL--TI 118 Query: 132 ICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPS 191 C FDD++LL PG++L A QM+KV+TPF++A ++ L+ ADLR LP P+ R G P Sbjct: 119 PCHFFDDALLLAPGTVLTGAGQMFKVFTPFKRAFLRGLMSADLRVLPAPSPRQPGSAPPV 178 Query: 192 NIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSI 251 RF + +FP GE A L +FC + Y +RD PA GTSQLSPYL++ Sbjct: 179 QAERFNYPDAEVDSALFPAGEAAAQTRLVQFCHGALAAYAARRDFPAQAGTSQLSPYLTL 238 Query: 252 GVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWT 311 GVLSPRQC L+ + + + SGA +WLNELIWREFYRHL+ +P +C +PFIPWT Sbjct: 239 GVLSPRQCLAALQPQAL-VSPGLSSGAEAWLNELIWREFYRHLLVAWPDLCRHRPFIPWT 297 Query: 312 EKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRI 371 +I W D L W+QG TGFP++DAAMRQLN GWMHNRLRM+TASFLVKDLL+DWR+ Sbjct: 298 ARIRWRDDPAGLLRWQQGMTGFPLVDAAMRQLNRCGWMHNRLRMLTASFLVKDLLIDWRL 357 Query: 372 GEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPE 431 GE YF+ QLLDGDLA+NNGGWQWAASTG+D+ PYFRIFNP +QG+R+DPQG FIR WLPE Sbjct: 358 GERYFLRQLLDGDLAANNGGWQWAASTGSDAAPYFRIFNPRVQGQRYDPQGQFIRRWLPE 417 Query: 432 LNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478 L +VP IH P W + L+YP P VDH +A TL + A+ Sbjct: 418 LRDVPDSDIHHPQRWALRRQRVLDYPDPQVDHARARQDTLLAFARAR 464 >gi|107099673|ref|ZP_01363591.1| hypothetical protein PaerPA_01000691 [Pseudomonas aeruginosa PACS2] gi|254244448|ref|ZP_04937770.1| deoxyribodipyrimidine photolyase [Pseudomonas aeruginosa 2192] gi|126197826|gb|EAZ61889.1| deoxyribodipyrimidine photolyase [Pseudomonas aeruginosa 2192] Length = 481 Score = 459 bits (1180), Expect = e-127, Method: Composition-based stats. Identities = 193/474 (40%), Positives = 274/474 (57%), Gaps = 8/474 (1%) Query: 5 TAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYAS 64 + ++L+W R DLR TDN AL AA +A+++ +P QWR+H + + F + Sbjct: 2 NGLPMNLIWFRCDLRTTDNSALLAAA--DGRPCVALYLLSPAQWREHDDAPCKVDFWLRN 59 Query: 65 LLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLE 124 L ++Q+ L+ I C ++ + E + C + V + N++Y +NE RRD+ + Sbjct: 60 LGELQRQLAALNIPLLVRDCGHWRQAPEVIGRLCRELGVGAVHVNQEYGVNEERRDQAVG 119 Query: 125 KRLQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADL---RSLPVP 180 +RL+ + + S D + PGS+L ++V++ FRK + L QA Sbjct: 120 QRLREQGVAFHSHLDQLFFAPGSVLTRTGGYFQVFSQFRKVCHERLYQALPGVRPRPQPQ 179 Query: 181 AIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ 240 + F P ++ ++P GE+ A LR F + + Y E+RD PA+ Sbjct: 180 PPHALASDPLPDAVPAFPRPADSLRRLWPAGEEVAQERLRDFADQHLADYHERRDFPALP 239 Query: 241 GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPS 300 GTSQLSPYL+ GVLSPRQC + + GA +W+NEL+WREFY+H++ YP Sbjct: 240 GTSQLSPYLAAGVLSPRQCLDAALVANRGEFSGGQQGAATWINELLWREFYKHILVGYPR 299 Query: 301 VCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASF 360 V +PF TE + W + L+AW+QG TG PIIDAAMRQL GWMHNRLRM+ A F Sbjct: 300 VSRHRPFREETEALRWRQAPAELEAWQQGRTGIPIIDAAMRQLLATGWMHNRLRMVVAMF 359 Query: 361 LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDP 420 L K+LL+DWR GE +FM L+DGDLA+NNGGWQW+ASTG D+VPYFR+FNP Q +RFDP Sbjct: 360 LSKNLLIDWREGERWFMRHLIDGDLAANNGGWQWSASTGTDAVPYFRLFNPLSQSERFDP 419 Query: 421 QGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQY 474 +G FIRHWLPEL + + IH P S ++YP P+VD K + L + Sbjct: 420 RGEFIRHWLPELAGLERKAIHDPSSLGLFA--GVDYPRPMVDLKASRERALAAF 471 >gi|296391481|ref|ZP_06880956.1| deoxyribodipyrimidine photolyase [Pseudomonas aeruginosa PAb1] Length = 481 Score = 459 bits (1180), Expect = e-127, Method: Composition-based stats. Identities = 192/474 (40%), Positives = 274/474 (57%), Gaps = 8/474 (1%) Query: 5 TAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYAS 64 + ++L+W R DLR TDN AL AA +A+++ +P QWR+H + + F + Sbjct: 2 NGLPMNLIWFRCDLRTTDNSALLAAA--DGRPCVALYLLSPAQWREHDDAPCKVDFWLRN 59 Query: 65 LLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLE 124 L ++Q+ L+ I C ++ + E + C + + + N++Y +NE RRD+ + Sbjct: 60 LGELQRQLAALNIPLLVRDCGHWRQAPEVIGRLCRELGIGAVHVNQEYGVNEERRDQAVG 119 Query: 125 KRLQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADL---RSLPVP 180 +RL+ + + S D + PGS+L ++V++ FRK + L QA Sbjct: 120 QRLREQGVAFHSHLDQLFFAPGSVLTRTGGYFQVFSQFRKVCHERLYQALPGVRPRPQPQ 179 Query: 181 AIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ 240 + F P ++ ++P GE+ A LR F + + Y E+RD PA+ Sbjct: 180 PPHALASDPLPDAVPAFPRPADSLRRLWPAGEEVAQERLRDFADQHLADYHERRDFPALP 239 Query: 241 GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPS 300 GTSQLSPYL+ GVLSPRQC + + GA +W+NEL+WREFY+H++ YP Sbjct: 240 GTSQLSPYLAAGVLSPRQCLDAALVANRGEFSGGQQGAATWINELLWREFYKHILVGYPR 299 Query: 301 VCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASF 360 V +PF TE + W + L+AW+QG TG PIIDAAMRQL GWMHNRLRM+ A F Sbjct: 300 VSRHRPFREETEALRWRQAPAELEAWQQGRTGIPIIDAAMRQLLATGWMHNRLRMVVAMF 359 Query: 361 LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDP 420 L K+LL+DWR GE +FM L+DGDLA+NNGGWQW+ASTG D+VPYFR+FNP Q +RFDP Sbjct: 360 LSKNLLIDWREGERWFMRHLIDGDLAANNGGWQWSASTGTDAVPYFRLFNPLSQSERFDP 419 Query: 421 QGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQY 474 +G FIRHWLPEL + + IH P S ++YP P+VD K + L + Sbjct: 420 RGEFIRHWLPELAGLERKAIHDPSSLGLFA--GVDYPRPMVDLKASRERALAAF 471 >gi|15599855|ref|NP_253349.1| deoxyribodipyrimidine photolyase [Pseudomonas aeruginosa PAO1] gi|9950915|gb|AAG08047.1|AE004880_3 deoxyribodipyrimidine photolyase [Pseudomonas aeruginosa PAO1] Length = 481 Score = 458 bits (1179), Expect = e-127, Method: Composition-based stats. Identities = 193/474 (40%), Positives = 274/474 (57%), Gaps = 8/474 (1%) Query: 5 TAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYAS 64 + ++L+W R DLR TDN AL AA +A+++ +P QWR+H + + F + Sbjct: 2 NGLPMNLIWFRCDLRTTDNSALLAAA--DGRPCLALYLLSPAQWREHDDAPCKVDFWLRN 59 Query: 65 LLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLE 124 L ++Q+ L+ I C ++ + E + C + V + N++Y +NE RRD+ + Sbjct: 60 LGELQRQLAALNIPLLVRDCGHWRQAPEVIGRLCRELGVGAVHVNQEYGVNEERRDQAVG 119 Query: 125 KRLQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADL---RSLPVP 180 +RL+ + + S D + PGS+L ++V++ FRK + L QA Sbjct: 120 QRLREQGVAFHSHLDQLFFAPGSVLTRTGGYFQVFSQFRKVCHERLYQALPGVRPRPQPQ 179 Query: 181 AIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ 240 + F P ++ ++P GE+ A LR F + + Y E+RD PA+ Sbjct: 180 PPHALASDPLPDAVPAFPRPADSLRRLWPAGEEVAQERLRDFADQHLADYHERRDFPALP 239 Query: 241 GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPS 300 GTSQLSPYL+ GVLSPRQC + + GA +W+NEL+WREFY+H++ YP Sbjct: 240 GTSQLSPYLAAGVLSPRQCLDAALVANRGEFSGGQQGAATWINELLWREFYKHILVGYPR 299 Query: 301 VCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASF 360 V +PF TE + W + L+AW+QG TG PIIDAAMRQL GWMHNRLRM+ A F Sbjct: 300 VSRHRPFREETEALRWRQAPAELEAWQQGRTGIPIIDAAMRQLLATGWMHNRLRMVVAMF 359 Query: 361 LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDP 420 L K+LL+DWR GE +FM L+DGDLA+NNGGWQW+ASTG D+VPYFR+FNP Q +RFDP Sbjct: 360 LSKNLLIDWREGERWFMRHLIDGDLAANNGGWQWSASTGTDAVPYFRLFNPLSQSERFDP 419 Query: 421 QGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQY 474 +G FIRHWLPEL + + IH P S ++YP P+VD K + L + Sbjct: 420 RGEFIRHWLPELAGLERKAIHDPSSLGLFA--GVDYPRPMVDLKASRERALAAF 471 >gi|229588295|ref|YP_002870414.1| deoxyribodipyrimidine photo-lyase [Pseudomonas fluorescens SBW25] gi|229360161|emb|CAY47018.1| deoxyribodipyrimidine photo-lyase [Pseudomonas fluorescens SBW25] Length = 481 Score = 458 bits (1178), Expect = e-126, Method: Composition-based stats. Identities = 190/473 (40%), Positives = 268/473 (56%), Gaps = 7/473 (1%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 +HL+WLR DLR+ DN AL AA + AV++ TPEQW H + + F +L + Sbjct: 1 MHLIWLRTDLRLHDNTALAAASQRG--PIAAVYLITPEQWLAHDDAPCKVDFWLRNLHAL 58 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128 +L + I + +D + L C + V + N +Y I+E RRD + K L+ Sbjct: 59 SATLGELNIPLLIRTAATWDQAPRVLSQLCQELSVESVHVNEEYGIHESRRDAAVSKALE 118 Query: 129 HRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187 + + S+ D + PGS+L ++V++ FRK L A R + P + Sbjct: 119 AQGVSFHSYLDQLFFQPGSVLTKTGTYFQVFSQFRKVCYSRLHSALPRIVAAPKAQAALT 178 Query: 188 VTPSNIPRF---FDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244 + IP F+ P QA+ ++P GE A L F +++ YY ++RD PA GTSQ Sbjct: 179 LKSDPIPTTVEGFEPPSQALRALWPAGEDEARRRLDAFADQQISYYKDERDFPAKPGTSQ 238 Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304 LS YL+ GV+SPRQC + + GA +W+NEL+WREFY+H++ YP V Sbjct: 239 LSAYLAAGVVSPRQCLHAALQTNGGEFESGDMGAITWINELLWREFYKHILVGYPRVSRH 298 Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364 + F P TE + W L AW++ TG PIIDAAMRQL GWMHNRLRM+ A FL K+ Sbjct: 299 RAFRPETEAVAWRNAPKDLAAWQEARTGLPIIDAAMRQLLETGWMHNRLRMVVAMFLTKN 358 Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424 LL+DWR GE +FM L+DGDLA+NNGGWQW++STG DS PYFRIF+P Q ++FD G F Sbjct: 359 LLIDWREGERFFMRHLIDGDLAANNGGWQWSSSTGTDSAPYFRIFSPLSQSEKFDSDGVF 418 Query: 425 IRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477 I+HWLPEL + + +H P + ++ +YP IVD KK+ L + + Sbjct: 419 IKHWLPELAALNKKDVHNPDAAGGLFGVA-DYPRSIVDLKKSRERALAAFRSL 470 >gi|218893757|ref|YP_002442626.1| deoxyribodipyrimidine photolyase [Pseudomonas aeruginosa LESB58] gi|218773985|emb|CAW29800.1| deoxyribodipyrimidine photolyase [Pseudomonas aeruginosa LESB58] Length = 481 Score = 458 bits (1178), Expect = e-126, Method: Composition-based stats. Identities = 193/474 (40%), Positives = 274/474 (57%), Gaps = 8/474 (1%) Query: 5 TAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYAS 64 + ++L+W R DLR TDN AL AA +A+++ +P QWR+H + + F + Sbjct: 2 NGLPMNLIWFRCDLRTTDNSALLAAA--DGRPCVALYLLSPAQWREHDDAPCKVDFWLRN 59 Query: 65 LLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLE 124 L ++Q+ L+ I C ++ + E + C + V + N++Y +NE RRD+ + Sbjct: 60 LGELQRQLAALNIPLLVRDCGHWRQAPEVIGRLCRELGVGAVHVNQEYGVNEERRDQAVG 119 Query: 125 KRLQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADL---RSLPVP 180 +RL+ + + S D + PGS+L ++V++ FRK + L QA Sbjct: 120 QRLREQGVAFHSHLDQLFFAPGSVLTRTGGYFQVFSQFRKVCHERLYQALPGVRPRPQPQ 179 Query: 181 AIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ 240 + F P ++ ++P GE+ A LR F + + Y E+RD PA+ Sbjct: 180 PPHALASDPLPDAVPAFPRPADSLRRLWPAGEEVAQERLRDFADQHLADYHERRDFPALP 239 Query: 241 GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPS 300 GTSQLSPYL+ GVLSPRQC + + GA +W+NEL+WREFY+H++ YP Sbjct: 240 GTSQLSPYLAAGVLSPRQCLDAALVANRGEFSGGQQGAATWINELLWREFYKHILVGYPR 299 Query: 301 VCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASF 360 V +PF TE + W + L+AW+QG TG PIIDAAMRQL GWMHNRLRM+ A F Sbjct: 300 VSRHRPFREETEALCWRQAPAELEAWQQGRTGIPIIDAAMRQLLATGWMHNRLRMVVAMF 359 Query: 361 LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDP 420 L K+LL+DWR GE +FM L+DGDLA+NNGGWQW+ASTG D+VPYFR+FNP Q +RFDP Sbjct: 360 LSKNLLIDWREGERWFMRHLIDGDLAANNGGWQWSASTGTDAVPYFRLFNPLSQSERFDP 419 Query: 421 QGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQY 474 +G FIRHWLPEL + + IH P S ++YP P+VD K + L + Sbjct: 420 RGEFIRHWLPELAGLERKAIHDPSSLGLFA--GVDYPRPMVDLKASRERALAAF 471 >gi|83644572|ref|YP_433007.1| deoxyribodipyrimidine photolyase [Hahella chejuensis KCTC 2396] gi|83632615|gb|ABC28582.1| Deoxyribodipyrimidine photolyase [Hahella chejuensis KCTC 2396] Length = 481 Score = 457 bits (1177), Expect = e-126, Method: Composition-based stats. Identities = 199/480 (41%), Positives = 273/480 (56%), Gaps = 10/480 (2%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNS---DAKVIAVFIATPEQWRQHGISARQSHFIYA 63 M L W RNDLR DN ALYAA + ++++IA F+ +PEQWR H ++ + F+ Sbjct: 1 MPRTLHWFRNDLRTRDNPALYAAAQRAREQNSELIACFLVSPEQWRSHDMADIKLDFMLR 60 Query: 64 SLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLL 123 +L +Q L++ I FD++ L + Q + + L +N ++ +NE RRDK + Sbjct: 61 NLKALQAELAKLNIPLFILDAPRFDEAPTKLLTLMQQHQCSALTFNEEFGVNERRRDKAV 120 Query: 124 EKRL-QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAI 182 ++ L + F D +LP GSI Y V+TP+++A + + P PA Sbjct: 121 KETLNAEGLEALKFRDQSILPAGSIRTGQGTPYAVFTPYKRAWFSQCPE-HIELWPEPAK 179 Query: 183 RLTGPVTPSNIPRFFDYPFQAIDPM-FPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQG 241 + + TP F + + GE AL L F + KV Y EQRD PAI G Sbjct: 180 QPSPMQTPEGDVPESVSGFDKVSSQTYAAGEDAALQKLDDFLEHKVDRYHEQRDFPAIDG 239 Query: 242 TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSV 301 SQLSPYL++GVLS RQC++ + G +W+NELIWR+FY H++ +P + Sbjct: 240 VSQLSPYLALGVLSGRQCFHAA-QRHRHASPNASEGVDTWINELIWRDFYIHILYDFPRI 298 Query: 302 CMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFL 361 M K F TE ++W AW +G TG PI+DAAMRQLN GWMHNRLRMI A FL Sbjct: 299 SMTKAFKQETENLQWRHSEKDFLAWCEGKTGIPIVDAAMRQLNQTGWMHNRLRMICAMFL 358 Query: 362 VKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQ 421 K+LL+DWR+GE YFM +L+DG LA+NNGGWQW+ASTG D+ PYFR+FNP Q +RFDP Sbjct: 359 SKNLLLDWRLGERYFMCKLIDGHLAANNGGWQWSASTGVDAAPYFRMFNPVAQSERFDPN 418 Query: 422 GTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481 G FIRH+ PEL + + IH P S + L YP+PIVD K + L + K + Sbjct: 419 GDFIRHYAPELAELSAKLIHQPPSDVRSR---LGYPVPIVDLKASRERALQAFRELKNST 475 >gi|116052805|ref|YP_793122.1| deoxyribodipyrimidine photolyase [Pseudomonas aeruginosa UCBPP-PA14] gi|115588026|gb|ABJ14041.1| deoxyribodipyrimidine photolyase [Pseudomonas aeruginosa UCBPP-PA14] Length = 481 Score = 457 bits (1176), Expect = e-126, Method: Composition-based stats. Identities = 192/474 (40%), Positives = 274/474 (57%), Gaps = 8/474 (1%) Query: 5 TAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYAS 64 + ++L+W R DLR TDN AL AA +A+++ +P QWR+H + + F + Sbjct: 2 NGLPMNLIWFRCDLRTTDNSALLAAA--DGRPCVALYLLSPAQWREHDDAPCKVDFWLRN 59 Query: 65 LLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLE 124 L ++Q+ L+ I C ++ + E + C + + + N++Y +NE RRD+ + Sbjct: 60 LGELQRQLAALNIPLLVRDCGHWRQAPEVIGRLCRELGIGAVHVNQEYGVNEERRDQAVG 119 Query: 125 KRLQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADL---RSLPVP 180 +RL+ + + S D + PGS+L ++V++ FRK + L QA Sbjct: 120 QRLREQGVAFHSHLDQLFFAPGSVLTRTGGYFQVFSQFRKVCHERLYQALPGVRPRPQPQ 179 Query: 181 AIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ 240 + F P ++ ++P GE+ A LR F + + Y E+RD PA+ Sbjct: 180 PPHALASDPLPDAVPAFPRPADSLRRLWPAGEEVAQERLRGFADQHLADYHERRDFPALP 239 Query: 241 GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPS 300 GTSQLSPYL+ GVLSPRQC + + GA +W+NEL+WREFY+H++ YP Sbjct: 240 GTSQLSPYLAAGVLSPRQCLDAALVANRGEFSGGQQGAATWINELLWREFYKHILVGYPR 299 Query: 301 VCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASF 360 V +PF TE + W + L+AW+QG TG PIIDAAMRQL GWMHNRLRM+ A F Sbjct: 300 VSRHRPFREETEALRWRQAPAELEAWQQGRTGIPIIDAAMRQLLATGWMHNRLRMVVAMF 359 Query: 361 LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDP 420 L K+LL+DWR GE +FM L+DGDLA+NNGGWQW+ASTG D+VPYFR+FNP Q +RFDP Sbjct: 360 LSKNLLIDWREGERWFMRHLIDGDLAANNGGWQWSASTGTDAVPYFRLFNPLSQSERFDP 419 Query: 421 QGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQY 474 +G FIRHWLPEL + + IH P S ++YP P+VD K + L + Sbjct: 420 RGEFIRHWLPELAGLERKAIHDPSSLGLFA--GVDYPRPMVDLKASRERALAAF 471 >gi|260774030|ref|ZP_05882945.1| deoxyribodipyrimidine photolyase [Vibrio metschnikovii CIP 69.14] gi|260610991|gb|EEX36195.1| deoxyribodipyrimidine photolyase [Vibrio metschnikovii CIP 69.14] Length = 475 Score = 456 bits (1174), Expect = e-126, Method: Composition-based stats. Identities = 216/474 (45%), Positives = 289/474 (60%), Gaps = 10/474 (2%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 + LVWLR DLR DN AL A + ++ V A+F+ATP QW++H ++ Q+ FIY L + Sbjct: 1 MKLVWLRRDLRAIDNTALQQAIASGES-VSALFVATPHQWQRHDLAPIQADFIYRRLFTL 59 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128 Q+ L+ I Y Q ++ + + + + V ++ NR YE NE +RD E+ L Sbjct: 60 QQELAALNIPLFYKQVDDYQQASQVVSEFAQSLSVNQVLVNRDYEWNEQQRDSQTEQALS 119 Query: 129 HRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187 I + DD LL PG +LN + +KV+TPF++A + + S P A+ Sbjct: 120 TLGIDWLACDDKCLLTPGQVLNKQGEYFKVFTPFKRAWLSRFTPPVIVSTPTAAVNPLLD 179 Query: 188 VTPSNIP---RFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244 + + + F YP + D +P+ + H LR+FC++ + Y +QRD PA +GTS+ Sbjct: 180 SEHNALWNERQDFAYPRVSSDQ-WPVDFETVRHQLRQFCQQSIDDYHQQRDFPAQEGTSR 238 Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304 LSPYL+IG+LS RQC R+ + L+ SGA WL+ELIWREFY+HL+ F + G Sbjct: 239 LSPYLAIGMLSVRQCIARMYAQSQSGLL--SSGAEIWLSELIWREFYQHLLVFESKLSKG 296 Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364 K F W ++++W+ D W +G TG+PI+DAAMRQLN GWMHNRLRM+ ASFL KD Sbjct: 297 KAFHSWGDQLQWSDDKQAFARWCEGNTGYPIVDAAMRQLNQTGWMHNRLRMVVASFLTKD 356 Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424 L +DW GE YFM QL+DGD A+NNGGWQW ASTG D PYFRIFNP QG+RFDP G F Sbjct: 357 LHIDWHWGERYFMQQLIDGDYAANNGGWQWCASTGCDGQPYFRIFNPITQGERFDPSGQF 416 Query: 425 IRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478 IR W+PEL +VPT YIH P W SL YP P+VDHK A TL Y AK Sbjct: 417 IRQWVPELASVPTAYIHTPWKW--PGVKSLLYPSPMVDHKVAREVTLRLYKEAK 468 >gi|104780105|ref|YP_606603.1| deoxyribodipyrimidine photolyase (photoreactivation), FAD-binding [Pseudomonas entomophila L48] gi|95109092|emb|CAK13789.1| deoxyribodipyrimidine photolyase (photoreactivation), FAD-binding [Pseudomonas entomophila L48] Length = 484 Score = 456 bits (1172), Expect = e-126, Method: Composition-based stats. Identities = 198/474 (41%), Positives = 275/474 (58%), Gaps = 9/474 (1%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 + L+WLR+DLRI DN AL AAC +A++IA+P QW++H +A + F +L + Sbjct: 1 MQLIWLRSDLRIDDNTALSAACQ--GGPAVALWIASPGQWQRHDDAACKVDFWLRNLRLL 58 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128 ++L I + + + L C + ++ + +N +Y +NE RD L+ Sbjct: 59 SQALEALNIPLLVRTTDTWREVPQVLLEACREHQIGTVHWNEEYGVNETLRDSAARALLE 118 Query: 129 H-RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187 V + D +L PGS+L Q ++V++ F++ +++L ++ P + Sbjct: 119 QSGVATHTHLDQLLFKPGSVLTRGGQYFQVFSQFKRVCLEHLHRSLPARAQRPKRQAPLD 178 Query: 188 VTPSNIPRFFD---YPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244 + IP D P Q++ +P GE+ A L +F E V Y + RD+PA GTSQ Sbjct: 179 IASDPIPEQIDGFAIPPQSLRDHWPAGEEEAQRRLSRFIDETVEDYPQLRDLPAKAGTSQ 238 Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304 LSPYL+ GV+SPRQC + +G +W+NEL+WREFY+H++ YP V Sbjct: 239 LSPYLAAGVISPRQCLHAALASNHGEFDSGNAGVQTWVNELLWREFYKHILVGYPQVSRH 298 Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364 + F TE + W L+AWKQG TGFPIIDAAMRQL GWMHNRLRMI A FL K+ Sbjct: 299 RAFRVHTEALPWRNAPDDLEAWKQGRTGFPIIDAAMRQLLETGWMHNRLRMIVAMFLSKN 358 Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424 LL+DWR GE +FM L+DGDLA+NNGGWQW+ASTG D+VPYFRIFNPT Q +RFDP+GTF Sbjct: 359 LLIDWREGERHFMRHLIDGDLAANNGGWQWSASTGTDAVPYFRIFNPTTQSQRFDPKGTF 418 Query: 425 IRHWLPELNNVPTQYIHAPHSWLD---KNDLSLNYPLPIVDHKKACHHTLNQYY 475 IR WLPEL + + IH P D N+ S NY PIVD + L+ + Sbjct: 419 IRQWLPELQAMDEKTIHRPVKSADLFVTNNYSSNYTSPIVDLDSSRQRALDAFK 472 >gi|315182348|gb|ADT89261.1| deoxyribodipyrimidine photolyase, cyclobutane pyrimidine dimer-specific [Vibrio furnissii NCTC 11218] Length = 475 Score = 455 bits (1171), Expect = e-126, Method: Composition-based stats. Identities = 215/474 (45%), Positives = 282/474 (59%), Gaps = 10/474 (2%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 + LVWLR DLR DN AL A SD V A+F+ATP QW+QH ++ Q+ FI+ L + Sbjct: 1 MKLVWLRRDLRSVDNTALNEALA-SDEAVCALFVATPTQWQQHDMAPMQADFIHRRLFAL 59 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL- 127 Q L+ + Y + F ++++ + ++ NR YE+NE +RD +RL Sbjct: 60 QTELAALNVPLLYREVVTFTEAVDAVTEVASALHANQVLANRDYELNEQQRDAQAAERLH 119 Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187 Q + +SFDD ++PPGS+ N +KV+TPF++A + +++ Sbjct: 120 QQGIEWQSFDDKCVMPPGSVRNKQGDYFKVFTPFKRAWLTQFSPPRIQASRAAKPWSLPE 179 Query: 188 VTPSNIP---RFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244 S + + F +P + D +P+ LR FC+E++ Y +QRD PA GTS Sbjct: 180 ALQSLLWCESQPFTHPRVSSD-AWPVDFDTIRGRLRAFCQEQLDDYKQQRDFPAQDGTSS 238 Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304 LSPYL+IG LSPRQC R+ E + GA +WL+ELIWREFY+HL+ F P + Sbjct: 239 LSPYLAIGALSPRQCIARVYAE--SAMGALSDGAQTWLSELIWREFYQHLLTFEPKLSKS 296 Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364 K F+ W ++ W D W +G TG+PI+DAAMRQLN GWMHNRLRMI ASFL KD Sbjct: 297 KDFLAWGARLTWWTDEAKFARWCEGNTGYPIVDAAMRQLNQTGWMHNRLRMIVASFLTKD 356 Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424 L +DWR GE YFM L+DGD A+NNGGWQW ASTG D PYFRIFNPT QG++FDPQG F Sbjct: 357 LHIDWRWGERYFMQHLVDGDYAANNGGWQWCASTGCDGQPYFRIFNPTTQGEKFDPQGRF 416 Query: 425 IRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478 IR W+PEL VP +IHAP +W N L YP PIVDHK TL Y AK Sbjct: 417 IRQWVPELATVPEAHIHAPSNWGGVNSLL--YPQPIVDHKAEREVTLRLYKEAK 468 >gi|269104447|ref|ZP_06157143.1| deoxyribodipyrimidine photolyase [Photobacterium damselae subsp. damselae CIP 102761] gi|268161087|gb|EEZ39584.1| deoxyribodipyrimidine photolyase [Photobacterium damselae subsp. damselae CIP 102761] Length = 494 Score = 455 bits (1171), Expect = e-126, Method: Composition-based stats. Identities = 217/486 (44%), Positives = 301/486 (61%), Gaps = 14/486 (2%) Query: 8 SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67 S +L+W R+DLRITDN AL C+ S VIA++IATP QW QH ++ Q I L Sbjct: 13 SHNLMWFRSDLRITDNTALSEVCNQS-LPVIALYIATPMQWHQHHVAPIQVDLIKRRLAV 71 Query: 68 VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127 + + L++ I + +FD ++E ++ CL + + N QY +NE RD+ L L Sbjct: 72 LTEQLAELSIPLIVLETEDFDSTVEKIEEICLMFNIASVHCNNQYLVNEEHRDQKLAANL 131 Query: 128 QH-RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRS-------LPV 179 + ++ +DD L PGS+LN + +KV+TP+ KA ++ Q + Sbjct: 132 KRYQISLVQYDDDCALAPGSVLNKQGEPFKVFTPYSKAWLKQYKQQTVEPTAMVGNTHKE 191 Query: 180 PAIRLTGPVTPSNIPRFFDYPFQAIDPM-FPIGEQNALHILRKFCKEKVYYYVEQRDIPA 238 + + + + +D+ + + + +P+ ++ L L FC +KV Y +QRD P+ Sbjct: 192 LSQEIEELLAVCGTVQHYDFQYPQVSSLTWPVDDEVILQHLYSFCCDKVGVYHQQRDYPS 251 Query: 239 IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKS-GAFSWLNELIWREFYRHLMAF 297 ++GTS LSPYL+IG LS RQC +++ L K G F W+NELIWREFY HLMA Sbjct: 252 LEGTSTLSPYLAIGALSVRQCLKAVQQVDPSCLEINKECGGFVWVNELIWREFYHHLMAE 311 Query: 298 YPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMIT 357 Y +C G+PF +T+ + WN+DSH L+AW+QG TGFPI+DAAMRQL GWMHNRLRMIT Sbjct: 312 YKHLCKGQPFQAYTQYVTWNEDSHYLKAWQQGKTGFPIVDAAMRQLQQTGWMHNRLRMIT 371 Query: 358 ASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKR 417 ASFL KDLL+ W GE +F+ L+DGD ASNNGGWQWAASTG D+ PYFR+FNPT QG+R Sbjct: 372 ASFLTKDLLLHWHHGERWFLQHLIDGDFASNNGGWQWAASTGTDAQPYFRVFNPTTQGER 431 Query: 418 FDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477 FDP+G FIR W+PEL +VP +YIH PH W + YP PI+DHK+A + + A Sbjct: 432 FDPEGEFIRKWIPELVDVPNKYIHTPHLW---HGDKKGYPAPIIDHKQARLRAIEVFKNA 488 Query: 478 KKQSLL 483 K+ + L Sbjct: 489 KEINTL 494 >gi|254228731|ref|ZP_04922154.1| deoxyribodipyrimidine photolyase family [Vibrio sp. Ex25] gi|262396547|ref|YP_003288400.1| deoxyribodipyrimidine photolyase [Vibrio sp. Ex25] gi|151938678|gb|EDN57513.1| deoxyribodipyrimidine photolyase family [Vibrio sp. Ex25] gi|262340141|gb|ACY53935.1| deoxyribodipyrimidine photolyase [Vibrio sp. Ex25] Length = 471 Score = 455 bits (1171), Expect = e-126, Method: Composition-based stats. Identities = 211/477 (44%), Positives = 284/477 (59%), Gaps = 12/477 (2%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 + LVW R DLR D+ AL AA +S V+A FIATPEQWR+H ++ Q+ I L + Sbjct: 1 MILVWFRRDLRTLDHTALKAAL-DSGQPVVACFIATPEQWREHHMAPMQADLIARRLEYL 59 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128 L + F Y + +F D E + + T + N YE+NE D + + L Sbjct: 60 NDELESLNVPFLYKEVPSFSDCTEVISEWAKTLEATSVMANIHYEVNERELDAQVSEALA 119 Query: 129 -HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187 H + + F D + PP ++LN + +KV+TPF++A + + A + Sbjct: 120 SHDIDFELFHDKCVHPPTTVLNKQGEYFKVFTPFKRAWLTQFQMPAVTKPQEQAPLSSKL 179 Query: 188 VTPSNIPRF-----FDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGT 242 + RF F YP ++ + F + L LR+F +E+ Y E+RD PAI GT Sbjct: 180 LEQLEPIRFSSDFTFSYPRESSEDWF-ASTNDVLKQLREFARERSDAYKEERDFPAIDGT 238 Query: 243 SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVC 302 SQLSPYL+IG LSPRQC RL E + G +WL+E+IWREFY+HL+ F P + Sbjct: 239 SQLSPYLAIGALSPRQCIARLYAENQQNDL--TEGKATWLSEIIWREFYQHLLVFEPKLV 296 Query: 303 MGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLV 362 GK FI W +KI+W+ D + WK G TG+PI+DAAMRQLN GWMHNRLRM+ ASFL Sbjct: 297 KGKGFIDWEDKIQWSYDEQAFERWKAGATGYPIVDAAMRQLNQTGWMHNRLRMVVASFLT 356 Query: 363 KDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQG 422 KDL +DWR GE YFMS+L+DGD A+NNGGWQW+ASTG D PYFRIFNP QG++FD G Sbjct: 357 KDLHIDWRWGEAYFMSKLVDGDFAANNGGWQWSASTGCDGQPYFRIFNPISQGEKFDSDG 416 Query: 423 TFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479 F+RHW+PE+ +VP +YIH P +W + L Y P+VDHK TL + +AK+ Sbjct: 417 QFVRHWVPEIKSVPNKYIHKPWTWEGFSLLE--YHKPMVDHKTEREITLRLFKSAKE 471 >gi|153835921|ref|ZP_01988588.1| deoxyribodipyrimidine photo-lyase [Vibrio parahaemolyticus AQ3810] gi|149750675|gb|EDM61420.1| deoxyribodipyrimidine photo-lyase [Vibrio parahaemolyticus AQ3810] Length = 471 Score = 455 bits (1170), Expect = e-126, Method: Composition-based stats. Identities = 208/477 (43%), Positives = 283/477 (59%), Gaps = 12/477 (2%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 + LVW R DLR D+ AL AA V+A F+ATPEQW++H ++ Q+ I L V Sbjct: 1 MILVWFRRDLRTLDHTALKAALDTGQ-PVVACFVATPEQWQEHHMAPMQADLIARRLEHV 59 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128 + L++ I Y + FDD + + + + T + N YE+NEV D+ + + L Sbjct: 60 HQELTELNIPLLYKEVPRFDDCTKVICDWADKLNATAVMVNINYEVNEVELDRKVSQALD 119 Query: 129 HRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187 +R + +F D + P ++LN + +KV+TPF++A +Q S P L Sbjct: 120 NRGVEFHAFHDKCVHAPTTVLNKQGEYFKVFTPFKRAWLQKFS-LPTVSKPQKQNELPSE 178 Query: 188 VTPSNIPRFFDYPF-----QAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGT 242 + FD F + + + L LR F +E+ Y +RD PAI GT Sbjct: 179 QLAAVKQDGFDADFTFSYPRESSEAWCASTNDILKQLRTFARERSDGYQMKRDFPAIDGT 238 Query: 243 SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVC 302 SQLSPYL+IG LSPRQC RL E + G +WL+E+IWREFY+HL+ F P + Sbjct: 239 SQLSPYLAIGALSPRQCIARLYAENPQPDL--SEGKATWLSEIIWREFYQHLLVFEPKLV 296 Query: 303 MGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLV 362 G+ FI W +KI+W+ D + WK G TG+PI+DAAMRQLN GWMHNRLRMI ASFL Sbjct: 297 KGRGFIDWEDKIQWSYDEQAFECWKTGTTGYPIVDAAMRQLNQTGWMHNRLRMIVASFLT 356 Query: 363 KDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQG 422 KDL +DWR GEEYFMS+L+DGD A+NNGGWQW+ASTG D PYFRIFNP QG++FD G Sbjct: 357 KDLHIDWRWGEEYFMSKLVDGDFAANNGGWQWSASTGCDGQPYFRIFNPISQGEKFDSDG 416 Query: 423 TFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479 F+RHW+PE+ +VP ++IH P +W + L Y P+VDHK TL + +AK+ Sbjct: 417 QFVRHWVPEIKSVPNKFIHKPWTWEGFSLLE--YHKPMVDHKVEREITLRLFKSAKE 471 >gi|119944756|ref|YP_942436.1| deoxyribodipyrimidine photo-lyase [Psychromonas ingrahamii 37] gi|119863360|gb|ABM02837.1| Deoxyribodipyrimidine photo-lyase type I [Psychromonas ingrahamii 37] Length = 453 Score = 454 bits (1169), Expect = e-125, Method: Composition-based stats. Identities = 198/471 (42%), Positives = 269/471 (57%), Gaps = 19/471 (4%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 +HLVW RNDLR +DN ALY AC V ++ TP QW+ H ++ Q+ FI +L + Sbjct: 1 MHLVWFRNDLRTSDNSALYYACLKG--PVTGIYFVTPGQWKNHQLAPIQADFIEQNLKVL 58 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128 + L+ GI + ++F L + + N + EINE RD+ ++K Sbjct: 59 AEELAALGIPLLIEEVADFSHIPARLKQIQKDHHINTIHANDEPEINEKERDQAVKKA-- 116 Query: 129 HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188 + + +L GS+L MYKV+T FR A ++ + Q DL LP PA ++ Sbjct: 117 -GLPLVLYQCDCILQAGSVLTKQGGMYKVFTAFRNAWMKEVKQTDLTPLPKPADQMPSLN 175 Query: 189 TPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPY 248 + +Y + +P GE AL LR F + + Y RDIP++ GTS LS Y Sbjct: 176 VSWSKNISVNYD-KKSSQAWPAGETAALRRLRHFLLQDIEDYHHNRDIPSLDGTSGLSAY 234 Query: 249 LSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFI 308 L GV+S ++C + F D L S FSW+NE++WREFYRHLM F P +C GK F Sbjct: 235 LKFGVISAKRCVYEVLAAFPDALDAQDSSVFSWINEIVWREFYRHLMIFNPQLCKGKNFN 294 Query: 309 PWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVD 368 + I W+ + +AW +G TG+ ++DAAMRQLN GWMHNRLRM+TASFL K LL+D Sbjct: 295 KLADNITWSNNPDDFKAWCEGRTGYGLVDAAMRQLNQTGWMHNRLRMVTASFLTKHLLID 354 Query: 369 WRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHW 428 WR GE YF L+DGDLASNNGGWQWAASTG D+ PYFRIFNP IQ ++FDP+G FIR + Sbjct: 355 WRWGEAYFREHLIDGDLASNNGGWQWAASTGCDAQPYFRIFNPIIQSQKFDPKGLFIRKY 414 Query: 429 LPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479 + ELN + IH P + IV+HK+A + L++Y KK Sbjct: 415 VKELNGFDNKKIHFPVNA-------------IVEHKQARLNALDRYSVLKK 452 >gi|46107828|ref|XP_380973.1| hypothetical protein FG00797.1 [Gibberella zeae PH-1] Length = 635 Score = 454 bits (1168), Expect = e-125, Method: Composition-based stats. Identities = 175/486 (36%), Positives = 266/486 (54%), Gaps = 20/486 (4%) Query: 11 LVWLRNDLRITDNKALYAA---CHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67 + W + DLRI+DN+AL A + +IA++I +P+ + H + + F+ +L Sbjct: 144 VHWFKMDLRISDNRALALASDKAKEAGVPLIALYIISPQDYEAHLRAPVRIDFMLRTLSV 203 Query: 68 VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKL-LEKR 126 +++ L++ I + + + + L+ N +YE++E+RR+ ++ Sbjct: 204 IKEDLAKLDIPLYVETVEKRKHLPDRILELMDEWGASHLYANMEYEVDELRREAAMIKDF 263 Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQA--------DLRSLP 178 ++ + D+ ++PPG + A + Y VYTP+ K I ++ + P Sbjct: 264 AENGKAFEVVHDTCIVPPGELHTGAGKQYAVYTPWFKTWIAHIHENLDLLELYEPPEKNP 323 Query: 179 VPAIRLTGPVTPSNIP------RFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVE 232 A + + + IP R D + + ++P GE A L KFC+E++ Y E Sbjct: 324 DSARKKFKKLFNAEIPEAPKSKRLGDEEKERLRSLWPCGEHEAKKRLDKFCEERIGNYHE 383 Query: 233 QRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFV-DLLIKPKSGAFSWLNELIWREFY 291 +R+IPA TS LS +L+ G +S R C ++ L G +W++E+ WR+FY Sbjct: 384 KRNIPADAATSSLSVHLASGTISARTCVRTARDRNKTKKLNGGNDGIQTWISEVAWRDFY 443 Query: 292 RHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHN 351 +H++ +P VCM KPF P I W+ D+ AW +G TGFPI+DAAMRQ+NTIG+MHN Sbjct: 444 KHVLVNWPYVCMNKPFKPEYSNISWSYDNDHFAAWCEGRTGFPIVDAAMRQMNTIGYMHN 503 Query: 352 RLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNP 411 R RMI ASFL KDLL+DWR GE+YFM L+DGD ASNNGGW ++AS G D PYFRIFNP Sbjct: 504 RCRMIVASFLAKDLLLDWRKGEKYFMEHLVDGDFASNNGGWGFSASVGVDPQPYFRIFNP 563 Query: 412 TIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDL-SLNYPLPIVDHKKACHHT 470 +Q ++FDP G +IR W+PEL ++ + IH P++ YP PIV HK Sbjct: 564 LLQSEKFDPDGDYIRKWVPELKDLDNKAIHDPYNRKAGPQAKKKGYPEPIVTHKDCRERA 623 Query: 471 LNQYYA 476 L Y Sbjct: 624 LAAYKE 629 >gi|219847792|ref|YP_002462225.1| deoxyribodipyrimidine photo-lyase [Chloroflexus aggregans DSM 9485] gi|219542051|gb|ACL23789.1| Deoxyribodipyrimidine photo-lyase [Chloroflexus aggregans DSM 9485] Length = 479 Score = 454 bits (1168), Expect = e-125, Method: Composition-based stats. Identities = 185/481 (38%), Positives = 245/481 (50%), Gaps = 20/481 (4%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 + + W R DLR+ DN AL AA S VI VFI S ++ F+ SL + Sbjct: 1 MLIHWFRRDLRLRDNTALLAAADASGGAVIPVFIFDDAILGGRFASPARTQFLLDSLTAL 60 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128 L G+ + + + L + + + +NR Y V+RD +++ L+ Sbjct: 61 DGELRSLGLHLVLRRG----EPLTTLMALLRESGAHGVTWNRDYTPYAVQRDSTIKRELR 116 Query: 129 HRV-ICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187 +S+ D+V+ ++ A Q Y VYTP+ K L +R VP + Sbjct: 117 AAGYRAESYKDAVIFEMNEVVTAAGQPYTVYTPYAKRWRARLESEPVRVQGVPELTAIPL 176 Query: 188 VTPSNIPRFFDY--PFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245 +P D P F GE A L F + Y RD+ AI GTS+L Sbjct: 177 PASDPLPALNDLLPTAPTSVPRFATGETAARAALEHFIHNAIANYATARDLVAIAGTSRL 236 Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305 SPYL GVLSPRQC + G SW+ ELIWREFY ++ +P G Sbjct: 237 SPYLRFGVLSPRQCVVAARAA------PSGPGPESWIGELIWREFYIQVLYHFPHALRG- 289 Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365 F P ++I W D L AW+QG TG+PI+DAAMRQL GWMHNR RMI ASFL KDL Sbjct: 290 SFKPVYDRIVWPNDPALFAAWQQGRTGYPIVDAAMRQLQQEGWMHNRARMIVASFLTKDL 349 Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425 L+DWR GE +FM L+DGD A+NNGGWQWAA TG D+ PYFRIFNP QG++FDP G ++ Sbjct: 350 LIDWRWGERHFMHLLIDGDPAANNGGWQWAAGTGTDAQPYFRIFNPVSQGQKFDPDGAYV 409 Query: 426 RHWLPELNNVPTQYIHAPHSWLDKN------DLSLNYPLPIVDHKKACHHTLNQYYAAKK 479 R ++PEL VPT+YIH PH + +Y P+VDH L Y +A + Sbjct: 410 RRYVPELAGVPTRYIHEPHKMPPSEQVRAGVQIGRDYSAPVVDHATQRLRALELYRSATR 469 Query: 480 Q 480 Sbjct: 470 A 470 >gi|91794189|ref|YP_563840.1| deoxyribodipyrimidine photolyase [Shewanella denitrificans OS217] gi|91716191|gb|ABE56117.1| Deoxyribodipyrimidine photo-lyase type I [Shewanella denitrificans OS217] Length = 497 Score = 454 bits (1168), Expect = e-125, Method: Composition-based stats. Identities = 201/486 (41%), Positives = 274/486 (56%), Gaps = 22/486 (4%) Query: 10 HLVWLRNDLRITDNKALYAACHNSD---AKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 L+W RNDLR+ DN AL AAC + KV AV++ TP+QW+ H ++ Q FI L Sbjct: 17 SLMWFRNDLRLGDNPALNAACEYAGVHGGKVRAVYLVTPKQWQHHHVAPMQIDFIRRHLE 76 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 + +SL GI FDD+ L Y + ++ +F ++ EINE RRD L Sbjct: 77 LLARSLGALGIPLDVLYGQVFDDTAALLVDYVNEHQIGAIFAGKEPEINEQRRDNAL--- 133 Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 + + LL PG++LN + MYKV+TPF K Q + +PVPA G Sbjct: 134 IASGLNLTLLQQDCLLAPGAVLNLSGDMYKVFTPFSKKWKQIAASMQILPVPVPAP--VG 191 Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246 P FD P ++ + + GE A IL +F + V Y RD PA +GTS+LS Sbjct: 192 SAITQIAPIVFDCPMRSSE-AWQAGEGAAKRILERFLNQNVAEYQVLRDFPAEEGTSRLS 250 Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP 306 PYL++G++SP+QC + + F + L+ S A +WLNEL+WREFYRHL+ +P + MG Sbjct: 251 PYLALGIISPKQCVAAILQRFPEALVDYTSPAKTWLNELMWREFYRHLLVAFPRLSMGHN 310 Query: 307 FIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLL 366 F + I+W D AW +G TG+P++DAAMRQLN GWMHNRLRM+ ASFL K LL Sbjct: 311 FNALGDGIKWRNDKAEFNAWCEGRTGYPLVDAAMRQLNQTGWMHNRLRMLVASFLTKHLL 370 Query: 367 VDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIR 426 +DWR GE+YF QL+DGDLA+NNGGWQW+A TG D+ PYFR+F+P Q +FD FI+ Sbjct: 371 IDWRWGEQYFRQQLIDGDLAANNGGWQWSAGTGCDAQPYFRVFSPLSQSAKFDSDCEFIK 430 Query: 427 HWLPELNNVPTQYIHAPH-------------SWLDKNDLSLNYPLPIVDHKKACHHTLNQ 473 ++PEL+ V + IH + + S YP PIV+H A + Sbjct: 431 RFVPELSEVSNKAIHEIKCSAAYEAAKVDLFAPPELEGKSATYPAPIVEHSFARKRAIEV 490 Query: 474 YYAAKK 479 A KK Sbjct: 491 LSALKK 496 >gi|313107322|ref|ZP_07793517.1| deoxyribodipyrimidine photolyase [Pseudomonas aeruginosa 39016] gi|310880019|gb|EFQ38613.1| deoxyribodipyrimidine photolyase [Pseudomonas aeruginosa 39016] Length = 476 Score = 454 bits (1168), Expect = e-125, Method: Composition-based stats. Identities = 191/470 (40%), Positives = 272/470 (57%), Gaps = 8/470 (1%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 ++L+W R DLR TDN AL AA +A+++ +P QWR+H + + F +L ++ Sbjct: 1 MNLIWFRCDLRTTDNSALLAAA--DGRPCVALYLLSPAQWREHDDAPCKVDFWLRNLGEL 58 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128 Q+ L+ I C ++ + E + C + + + N++Y +NE RRD+ + +RL+ Sbjct: 59 QRQLAALNIPLLVRDCGHWRQAPEVIGRLCRELGIGAVHVNQEYGVNEERRDQAVGQRLR 118 Query: 129 HRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADL---RSLPVPAIRL 184 + + S D + PGS+L ++V++ FRK + L QA Sbjct: 119 EQGVAFHSHLDQLFFAPGSVLTRTGGYFQVFSQFRKVCHERLYQALPGVRPRPQPQPPHA 178 Query: 185 TGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244 + F P ++ ++P GE+ A LR F + + Y E+RD PA+ GTSQ Sbjct: 179 LASDPLPDAVPAFPRPADSLRRLWPAGEKVAQERLRDFADQHLADYHERRDFPALPGTSQ 238 Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304 LSPYL+ GVLSPRQC + + GA +W+NEL+WREFY+H++ YP V Sbjct: 239 LSPYLAAGVLSPRQCLDAALVANRGEFSGGQQGAATWINELLWREFYKHILVGYPRVSRH 298 Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364 +PF TE + W + L+AW+QG TG IIDAAMRQL GWMHNRLRM+ A FL K+ Sbjct: 299 RPFREETEALRWRQAPAELEAWQQGRTGITIIDAAMRQLLATGWMHNRLRMVVAMFLSKN 358 Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424 LL+DWR GE +FM L+DGDLA+NNGGWQW+ASTG D+VPYFR+FNP Q +RFDP+G F Sbjct: 359 LLIDWREGERWFMRHLIDGDLAANNGGWQWSASTGTDAVPYFRLFNPLSQSERFDPRGEF 418 Query: 425 IRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQY 474 IRHWLPEL + + IH P S ++YP P+VD K + L + Sbjct: 419 IRHWLPELAGLERKAIHDPSSLGLFA--GVDYPRPMVDLKASRERALAAF 466 >gi|254448088|ref|ZP_05061551.1| deoxyribodipyrimidine photolyase [gamma proteobacterium HTCC5015] gi|198262214|gb|EDY86496.1| deoxyribodipyrimidine photolyase [gamma proteobacterium HTCC5015] Length = 486 Score = 453 bits (1166), Expect = e-125, Method: Composition-based stats. Identities = 204/480 (42%), Positives = 284/480 (59%), Gaps = 12/480 (2%) Query: 12 VWLRNDLRITDNKALYAACHNSDA---KVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 VW R+DLR DN+AL A ++A +IA +IATP+QW +H +SA Q FI L + Sbjct: 9 VWFRSDLRCHDNRALSRAAEQANAQNLPLIAFYIATPKQWLEHDVSALQVDFILRHLPIL 68 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128 Q L++ I F+ C +F E L C + +LF NR+Y +NE++RD+ + + L+ Sbjct: 69 QTQLARYQIPFRVWVCDDFSQVPELLLEQCQNWNIQQLFANREYPVNEIQRDQRVARTLE 128 Query: 129 HR-VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187 + FDD LL PGS+ YKV+TPF+K + L +AD+ P I P Sbjct: 129 STSIETHFFDDFTLLAPGSVRTGQGDPYKVFTPFKKQCFKQLQEADIAEAPTARIEAEAP 188 Query: 188 --VTPSNIPRFFD----YPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQG 241 S D + ++ ++P GE AL L F + ++++Y ++RD P +G Sbjct: 189 SHFAQSPPESLADFAPHLDTKTLEHLWPAGESAALERLETFAEHRLHHYQQRRDYPNAKG 248 Query: 242 TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSV 301 TS +S YL+IG LSPR GA +W++EL+WR+FY+H++ +P V Sbjct: 249 TSAISAYLAIGSLSPRAAMRAATRANQGEWTSGSEGAQTWISELLWRDFYQHILTAFPRV 308 Query: 302 CMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFL 361 G+ F P TE I W D QAW +G TG PI+DAAMRQL GWMHNRLRM+TA FL Sbjct: 309 SRGRAFQPHTENIVWRDDPEAFQAWCEGRTGIPIVDAAMRQLLQTGWMHNRLRMVTAMFL 368 Query: 362 VKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQ 421 K+LL+DWR GE+YF QL+DG+L +NNGGWQWAASTG D+ PYFRIFNP QG+RFD Sbjct: 369 SKNLLIDWRRGEQYFRRQLIDGELGANNGGWQWAASTGTDAAPYFRIFNPVTQGQRFDKD 428 Query: 422 GTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481 G FIRH++PEL ++P +Y+H P + D + L +YP PIVD K + + + A + S Sbjct: 429 GAFIRHYVPELKDLPNKYLHEPWTHPDADQL--DYPQPIVDLKLSRQRAIEVFRQASEHS 486 >gi|269965348|ref|ZP_06179468.1| deoxyribodipyrimidine photolyase [Vibrio alginolyticus 40B] gi|269829994|gb|EEZ84223.1| deoxyribodipyrimidine photolyase [Vibrio alginolyticus 40B] Length = 471 Score = 453 bits (1166), Expect = e-125, Method: Composition-based stats. Identities = 209/477 (43%), Positives = 282/477 (59%), Gaps = 12/477 (2%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 + LVW R DLR D+ AL AA +S V+A FIATPEQWR+H ++ Q+ I L + Sbjct: 1 MILVWFRRDLRTLDHTALKAAL-DSGQPVVACFIATPEQWREHHMAPMQADLIARRLACL 59 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128 + L I F Y + +F D + + + T + N YE+NE D + + L Sbjct: 60 NEELESLNIPFLYKEVPSFSDCTDVISGWAETLEATSVMANIHYEVNERELDTQVSEALA 119 Query: 129 -HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187 H + + F D + P ++LN + +KV+TPF++A + + A Sbjct: 120 SHDIEFELFHDKCVHAPTTVLNKQGEYFKVFTPFKRAWLTQFHMPTVVKPHEQAPLNKKV 179 Query: 188 VTPSNIPRF-----FDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGT 242 + RF F YP ++ + + + L LR+F +E+ Y +RD PAI GT Sbjct: 180 LEQLESARFNSSFTFSYPRESSED-WLASTNDILKQLREFARERSDAYQSERDFPAIDGT 238 Query: 243 SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVC 302 SQLSPYL+IG LSPRQC RL E + G +WL+E+IWREFY+HL+ F P + Sbjct: 239 SQLSPYLAIGALSPRQCIARLYAENQQNDL--TEGKATWLSEIIWREFYQHLLVFEPKLV 296 Query: 303 MGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLV 362 GK FI W +KI+W+ D + WK G TG+PI+DAAMRQLN GWMHNRLRMI ASFL Sbjct: 297 KGKGFIDWEDKIQWSYDEKAFERWKTGTTGYPIVDAAMRQLNQTGWMHNRLRMIVASFLT 356 Query: 363 KDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQG 422 KDL +DWR GE YFMS+L+DGD A+NNGGWQW+ASTG D PYFRIFNP QG++FD G Sbjct: 357 KDLHIDWRWGEAYFMSKLVDGDFAANNGGWQWSASTGCDGQPYFRIFNPISQGEKFDANG 416 Query: 423 TFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479 F+RHW+PE+ +VP +YIH P +W + L Y P+VDHK TL + +AK+ Sbjct: 417 EFVRHWVPEIKSVPNKYIHKPWTWEGFSLLE--YHKPMVDHKTEREITLQLFKSAKE 471 >gi|323193139|gb|EFZ78358.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp. enterica serovar Montevideo str. 609458-1] Length = 427 Score = 453 bits (1165), Expect = e-125, Method: Composition-based stats. Identities = 227/430 (52%), Positives = 300/430 (69%), Gaps = 4/430 (0%) Query: 53 ISARQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQY 112 ++ RQ+ FI A L +Q +L++KGI +H+ ++F SIE + + C Q V+ LFYN QY Sbjct: 1 MAPRQAAFISAQLNALQTALAEKGIPLLFHEVADFSASIETVKNVCRQHDVSHLFYNYQY 60 Query: 113 EINEVRRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQA 172 E NE +RD +EK L VIC+ FDDSV+L PG+++ +MYKV+TPF+ A ++ L + Sbjct: 61 EFNERQRDAAVEKTLPS-VICEGFDDSVILAPGAVMTGNHEMYKVFTPFKNAWLKRLKED 119 Query: 173 DLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDP-MFPIGEQNALHILRKFCKEKVYYYV 231 +P P IR++G ++ P +YP QA D +FP+ E + LR+FC + Y Sbjct: 120 IPPCVPAPKIRVSGALSTPLTPVSLNYPQQAFDAALFPVEENAVIAQLRQFCAQGADEYE 179 Query: 232 EQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFY 291 +RD PA+ GTS+LS L+ G LSPRQC +RL E L WLNELIWREFY Sbjct: 180 SRRDFPAVDGTSRLSASLATGGLSPRQCLHRLLAEQPQALDGGPGSV--WLNELIWREFY 237 Query: 292 RHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHN 351 RHLM +YP++C +PFI WT+++ W ++SH QAW++G TG+PI+DAAMRQLN GWMHN Sbjct: 238 RHLMIWYPALCKHQPFIRWTKRVAWQENSHDFQAWQKGETGYPIVDAAMRQLNATGWMHN 297 Query: 352 RLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNP 411 RLRMITASFLVKDLL+DWR+GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNP Sbjct: 298 RLRMITASFLVKDLLIDWRLGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNP 357 Query: 412 TIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTL 471 T QG+RFD G FIR WLP L ++P + IH P W +K + L+YP PIV+HK+A TL Sbjct: 358 TTQGERFDRDGEFIRQWLPALRDIPGKAIHEPWRWAEKAGVVLDYPRPIVEHKQARIATL 417 Query: 472 NQYYAAKKQS 481 + Y AA+K + Sbjct: 418 SAYEAARKGA 427 >gi|260769655|ref|ZP_05878588.1| deoxyribodipyrimidine photolyase [Vibrio furnissii CIP 102972] gi|260614993|gb|EEX40179.1| deoxyribodipyrimidine photolyase [Vibrio furnissii CIP 102972] Length = 475 Score = 453 bits (1165), Expect = e-125, Method: Composition-based stats. Identities = 215/474 (45%), Positives = 283/474 (59%), Gaps = 10/474 (2%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 + LVWLR DLR DN AL A SD V A+F+ATP QW+QH ++ Q+ FI+ L + Sbjct: 1 MKLVWLRRDLRSVDNTALNEALA-SDEAVCALFVATPTQWQQHDMAPMQADFIHRRLFVL 59 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL- 127 Q L+ + Y + + F ++++ + ++ NR YE+NE +RD +RL Sbjct: 60 QTELAALNVPLLYREVATFTEAVDAVTEVASALHANQVLANRDYELNEQQRDAQAAERLH 119 Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187 Q + +SFDD ++PPGS+ N +KV+TPF++A + +++ Sbjct: 120 QQGIEWQSFDDKCVMPPGSLRNKQGDYFKVFTPFKRAWLTQFSPPRIQASRAAKPWSLPE 179 Query: 188 VTPSNIP---RFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244 S + + F +P + D +P+ LR FC+E++ Y +QRD PA GTS Sbjct: 180 ALQSLLWCEAQPFTHPRVSSD-AWPVDFDTIRRRLRAFCQEQLDDYKQQRDFPAQDGTSS 238 Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304 LSPYL+IG LSPRQC R+ E + GA +WL+ELIWREFY+HL+ F P + Sbjct: 239 LSPYLAIGALSPRQCIARVYAE--SAMGALSDGAQTWLSELIWREFYQHLLTFEPKLSKS 296 Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364 K F+ W ++ W D W +G TG+PI+DAAMRQLN GWMHNRLRMI ASFL KD Sbjct: 297 KDFLAWGARLTWWTDEAKFARWCEGNTGYPIVDAAMRQLNQTGWMHNRLRMIVASFLTKD 356 Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424 L +DWR GE YFM L+DGD A+NNGGWQW ASTG D PYFRIFNPT QG++FDPQG F Sbjct: 357 LHIDWRWGERYFMQHLVDGDYAANNGGWQWCASTGCDGQPYFRIFNPTTQGEKFDPQGRF 416 Query: 425 IRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478 IR W+PEL VP +IHAP +W N L YP PIVDHK TL Y AK Sbjct: 417 IRQWVPELATVPEAHIHAPSNWGGVNSLL--YPQPIVDHKAEREVTLRLYKEAK 468 >gi|312958863|ref|ZP_07773382.1| DNA photolyase, FAD-binding [Pseudomonas fluorescens WH6] gi|311286633|gb|EFQ65195.1| DNA photolyase, FAD-binding [Pseudomonas fluorescens WH6] Length = 480 Score = 453 bits (1165), Expect = e-125, Method: Composition-based stats. Identities = 186/473 (39%), Positives = 266/473 (56%), Gaps = 7/473 (1%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 +HL+WLR DLR+ DN AL AA V AV++ TPEQWR H + + F +L ++ Sbjct: 1 MHLIWLRTDLRLHDNTALAAASQRG--PVAAVYLITPEQWRAHDDAPCKVDFWLRNLQRL 58 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128 +L + I + + + C + V + N +Y I+E RRD + ++L+ Sbjct: 59 SLALGELNIPLLIRSAATWQQVPAVVSELCRELSVKSVHVNEEYGIHENRRDAAVAQQLE 118 Query: 129 H-RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187 V + D +L PGS+L ++V++ FRK L A R + P + Sbjct: 119 ACGVTFHRYLDQLLFQPGSVLTKTGTYFQVFSQFRKVCYSRLHSALPRIVATPKAQQKLA 178 Query: 188 VTPSNIPRF---FDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244 +P+ F+ P + ++P GE A L F ++++ YY ++RD PA GTSQ Sbjct: 179 FNSDPVPQTVDGFEPPSDCLRALWPAGEDEARRRLDAFAEQQISYYKDERDFPAKPGTSQ 238 Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304 LS YL+ GV+SPRQC + + G +W+NEL+WREFY+H++ YP V Sbjct: 239 LSAYLAAGVVSPRQCLHAALQSNQGEFESGDIGTITWINELLWREFYKHILVGYPRVSRH 298 Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364 + F P TE + W L AW++ TG PIIDAAMRQL GWMHNRLRM+ A FL K+ Sbjct: 299 RAFRPETEAVAWRHAPKDLAAWQEARTGLPIIDAAMRQLLETGWMHNRLRMVVAMFLTKN 358 Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424 LL+DWR GE +FM L+DGDLA+NNGGWQW++STG DS PYFRIF+P Q ++FD G F Sbjct: 359 LLIDWREGERFFMRHLIDGDLAANNGGWQWSSSTGTDSAPYFRIFSPLSQSEKFDSDGVF 418 Query: 425 IRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477 I+HWLPEL + + +H P + ++ +YP IVD KK+ L + + Sbjct: 419 IKHWLPELAALNKKDVHNPEAVGGLFGMA-DYPRAIVDLKKSRERALAAFRSL 470 >gi|262278230|ref|ZP_06056015.1| deoxyribodipyrimidine photolyase FAD-binding [Acinetobacter calcoaceticus RUH2202] gi|262258581|gb|EEY77314.1| deoxyribodipyrimidine photolyase FAD-binding [Acinetobacter calcoaceticus RUH2202] Length = 480 Score = 453 bits (1165), Expect = e-125, Method: Composition-based stats. Identities = 190/477 (39%), Positives = 272/477 (57%), Gaps = 15/477 (3%) Query: 10 HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69 L+W R DLR+ D+ AL+ AC + I + I +PEQW+ H + + +F L Q++ Sbjct: 6 QLIWFRQDLRVRDHAALWHACQQGPS--IGLIILSPEQWKIHHDAPIKINFYLRQLQQLK 63 Query: 70 KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH 129 K L Q I + D +++ Q + ++ N + +NE++RDK++++ L Sbjct: 64 KELEQLNIPLIIQVIPYWKDIADYISKLAQQLNIENVYSNIEVGVNELKRDKIVQQALNQ 123 Query: 130 R-VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNL-VQADLRSLPVPAIRLTGP 187 + F D + P SI N + Q Y+V++ F+KA L + + P+P + P Sbjct: 124 QSKELFLFHDRTIFPLRSIRNQSQQPYQVFSAFKKACYSKLDISGLPQCYPIPEKQNAYP 183 Query: 188 VTPSNIPRFFDYPFQAI---------DPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPA 238 + SNI +A ++P GE AL L F + + +Y +RD P Sbjct: 184 QSFSNIKSLGLEDIEAFFDSSIPKEQQDLWPTGEDFALEQLDLFINDHLSHYKLERDFPN 243 Query: 239 IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFY 298 ++GTSQLSPYL++G+LS RQC L G +WL+EL+WREFY+H++ + Sbjct: 244 VKGTSQLSPYLNLGILSIRQCLQALFRAEHGNFHLTNEGQQTWLDELLWREFYQHILFDF 303 Query: 299 PSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITA 358 P V PF T+ I+W + L AW+ G TG PIIDA MRQL GWMHNR+RMITA Sbjct: 304 PHVSKHYPFKKNTQNIKWENNQEHLVAWQNGQTGIPIIDAGMRQLQKTGWMHNRVRMITA 363 Query: 359 SFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRF 418 FL K+LL+DWR+GE++FM L+DGDLA+NNGGWQW ASTG D+VPYFRIFNP Q K+F Sbjct: 364 MFLCKNLLIDWRVGEQWFMQHLIDGDLAANNGGWQWCASTGTDAVPYFRIFNPIAQSKKF 423 Query: 419 DPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYY 475 DP G +IR W+ EL ++ + IH P+S K L LNYP PIVD K+ + + Sbjct: 424 DPNGDYIRQWVNELAHLDNKMIHEPYS--TKTHLQLNYPKPIVDLKETRIKAIETFK 478 >gi|261213071|ref|ZP_05927355.1| deoxyribodipyrimidine photolyase [Vibrio sp. RC341] gi|260838136|gb|EEX64813.1| deoxyribodipyrimidine photolyase [Vibrio sp. RC341] Length = 469 Score = 452 bits (1164), Expect = e-125, Method: Composition-based stats. Identities = 214/474 (45%), Positives = 287/474 (60%), Gaps = 10/474 (2%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 + LVW R DLR DN AL AA + + V+AV+IATP QW+QH ++ Q+ FI+ L ++ Sbjct: 1 MKLVWFRRDLRSFDNTALSAAIASGE-PVVAVYIATPAQWQQHHVAPIQADFIWRRLGEL 59 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128 Q+ L+ + Y Q ++F + E + + T++F NR YE++E +RD+ E L Sbjct: 60 QQELAALNVPLLYQQVADFKAAAEAVSQLASKLNATQVFANRDYELDEQQRDRHTELLLD 119 Query: 129 HRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187 R I +FDD LLPPG + + +KV+TPF++A + + Sbjct: 120 ERGISWATFDDKCLLPPGCVRTKQGEHFKVFTPFKRAWLSLFQPPIITKNQPAEPWTLSS 179 Query: 188 VTPSNIPRF---FDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244 S + FDYP +P+ + + LR FC+++V Y +QRD PA +GTS Sbjct: 180 EWASWVWNSAQTFDYPRVDSQS-WPVDFETIRNQLRDFCRDQVQNYHQQRDFPAREGTSV 238 Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304 LSPYL+IG LS RQC RL E + GA WL+ELIWREFY+HL+A P++ Sbjct: 239 LSPYLAIGALSARQCVARLYRE--SSMGALSEGAQVWLSELIWREFYQHLVAIEPNISKS 296 Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364 + F W ++EW D+ Q W +G TG+PI+DAAMRQLN GWMHNRLRMI ASFL KD Sbjct: 297 RDFHEWGSRLEWWDDNEKFQRWCEGTTGYPIVDAAMRQLNQTGWMHNRLRMIVASFLTKD 356 Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424 L +DWR GE YFMS+L+DGD A+NNGGWQW ASTG D PYFRIFNP QG++FDPQG F Sbjct: 357 LHIDWRWGERYFMSKLIDGDYAANNGGWQWCASTGCDGQPYFRIFNPVSQGEKFDPQGEF 416 Query: 425 IRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478 IRHW+PEL ++ YIH P ++ N + YP +VDHK+ TL Y AK Sbjct: 417 IRHWVPELRSMSAAYIHQPWTYPAVNSVP--YPARLVDHKQEREVTLRLYKTAK 468 >gi|91223275|ref|ZP_01258541.1| deoxyribodipyrimidine photolyase [Vibrio alginolyticus 12G01] gi|91192088|gb|EAS78351.1| deoxyribodipyrimidine photolyase [Vibrio alginolyticus 12G01] Length = 471 Score = 452 bits (1164), Expect = e-125, Method: Composition-based stats. Identities = 209/477 (43%), Positives = 282/477 (59%), Gaps = 12/477 (2%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 + LVW R DLR D+ AL AA +S V+A FIATPEQWR+H ++ Q+ I L + Sbjct: 1 MILVWFRRDLRTLDHTALKAAL-DSGHPVVACFIATPEQWREHHMAPMQADLIARRLACL 59 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128 + L I F Y + +F D + + + T + N YE+NE D + + L Sbjct: 60 NEELESLNIPFLYKEVPSFSDCTDVISGWAETLEATSVMANIHYEVNERELDTQVSEALA 119 Query: 129 -HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187 H + + F D + P ++LN + +KV+TPF++A + + A Sbjct: 120 SHDIEFELFHDKCVHAPTTVLNKQGEYFKVFTPFKRAWLTQFHMPTVVKPHEQAPLNKKV 179 Query: 188 VTPSNIPRF-----FDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGT 242 + RF F YP ++ + + + L LR+F +E+ Y +RD PAI GT Sbjct: 180 LEQLESARFNSSFTFSYPRESSED-WLASTNDILKQLREFARERSDAYQSERDFPAIDGT 238 Query: 243 SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVC 302 SQLSPYL+IG LSPRQC RL E + G +WL+E+IWREFY+HL+ F P + Sbjct: 239 SQLSPYLAIGALSPRQCIARLYAENQQNDL--TEGKATWLSEIIWREFYQHLLVFEPKLV 296 Query: 303 MGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLV 362 GK FI W +KI+W+ D + WK G TG+PI+DAAMRQLN GWMHNRLRMI ASFL Sbjct: 297 KGKGFIDWEDKIQWSYDEKAFERWKTGTTGYPIVDAAMRQLNQTGWMHNRLRMIVASFLT 356 Query: 363 KDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQG 422 KDL +DWR GE YFMS+L+DGD A+NNGGWQW+ASTG D PYFRIFNP QG++FD G Sbjct: 357 KDLHIDWRWGEAYFMSKLVDGDFAANNGGWQWSASTGCDGQPYFRIFNPISQGEKFDANG 416 Query: 423 TFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479 F+RHW+PE+ +VP +YIH P +W + L Y P+VDHK TL + +AK+ Sbjct: 417 EFVRHWVPEIKSVPNKYIHKPWTWEGFSLLE--YHKPMVDHKTEREITLQLFKSAKE 471 >gi|126175256|ref|YP_001051405.1| deoxyribodipyrimidine photo-lyase [Shewanella baltica OS155] gi|125998461|gb|ABN62536.1| Deoxyribodipyrimidine photo-lyase type I [Shewanella baltica OS155] Length = 505 Score = 452 bits (1163), Expect = e-125, Method: Composition-based stats. Identities = 202/491 (41%), Positives = 285/491 (58%), Gaps = 15/491 (3%) Query: 1 MKATTAMSVHLVWLRNDLRITDNKALYAAC---HNSDAKVIAVFIATPEQWRQHGISARQ 57 M + L+W R DLR+ DN+AL AAC + + A++IATP QW++H ++ Q Sbjct: 18 MSIKVQGNNALMWFRQDLRLADNQALTAACDWARANGVALKAIYIATPTQWQRHDVAPIQ 77 Query: 58 SHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEV 117 FI + + + L+ GI F+ Q F D ++ YC QQ ++++F + EINE Sbjct: 78 LDFIERHINLLAQGLASLGITFELIQLDAFADVPAFIGHYCQQQGISRVFAGSEPEINEQ 137 Query: 118 RRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSL 177 +RD+ +Q + D+ LL PG++LN + MYKV+TPF + + + + L Sbjct: 138 QRDQA---CIQAGIPLVLTDEHCLLKPGTVLNLSGDMYKVFTPFSRKWREIAARHAIFLL 194 Query: 178 PVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIP 237 PVPA GPV P F+ + ++ GE A IL F ++KV Y + RD P Sbjct: 195 PVPAP--LGPVLTEPKPHLFNNVTKVSSELWAAGEGQAKRILSAFIQQKVQDYKQDRDFP 252 Query: 238 AIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAF 297 AI GTS +SPYL+IGV+SPRQC L +F ++++ S A +WLNEL WREFYRHL+ Sbjct: 253 AIDGTSSISPYLAIGVISPRQCVAALLHDFPEVIVDDTSPARTWLNELTWREFYRHLLVA 312 Query: 298 YPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMIT 357 +P + F + ++W + AW +G TG+PI+DAAMRQLN GWMHNRLRM+ Sbjct: 313 FPDLSKNHNFNRQADHVQWRNNPQEFAAWCEGRTGYPIVDAAMRQLNQTGWMHNRLRMVV 372 Query: 358 ASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKR 417 ASFL K LL+DWR GE YF +L+DGDLA+NNGGWQW+A G D+ PYFRIFNP Q ++ Sbjct: 373 ASFLTKHLLIDWRWGERYFRQKLIDGDLAANNGGWQWSAGCGCDAQPYFRIFNPMSQSEK 432 Query: 418 FDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKN-------DLSLNYPLPIVDHKKACHHT 470 FDP G+FIR +LPEL + + +H P + + ++ YP IV+H A Sbjct: 433 FDPDGSFIRKYLPELASWGIKQLHQPSTAQTPSLFEQPLFNIKTAYPSAIVEHSAARARA 492 Query: 471 LNQYYAAKKQS 481 L KK + Sbjct: 493 LTVLGVLKKAA 503 >gi|146306105|ref|YP_001186570.1| deoxyribodipyrimidine photo-lyase type I [Pseudomonas mendocina ymp] gi|145574306|gb|ABP83838.1| deoxyribodipyrimidine photo-lyase type I [Pseudomonas mendocina ymp] Length = 477 Score = 452 bits (1163), Expect = e-125, Method: Composition-based stats. Identities = 198/469 (42%), Positives = 272/469 (57%), Gaps = 7/469 (1%) Query: 10 HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69 L+W R+DLRI DN AL A S IA+++ TP QW++H + + F +L + Sbjct: 3 QLMWFRSDLRIDDNTALSQAM--SRGSTIALYLVTPGQWQRHDDAPCKVDFWLRNLAHLS 60 Query: 70 KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL-Q 128 ++L+ + QC +++ + + C Q V + N +Y INE RD+ + L Q Sbjct: 61 RALAALNVPLLIRQCEDWNQAPAVIAEVCHQHNVCAVHANEEYGINENLRDRCVAAYLAQ 120 Query: 129 HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188 + S D +L PGSIL + ++VY+ FRK ++L A + P + P+ Sbjct: 121 QDIAWHSHLDQLLFKPGSILTRSGGYFQVYSQFRKVCYEHLHMALPGLVARPVAQAPTPL 180 Query: 189 TPSNIPRFFD---YPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245 IP D P + + ++P GE+ A L +F E++ YY ++RD PA+ GTSQL Sbjct: 181 ASDAIPHAVDGFAMPSEQLRSLWPAGEEAARQRLERFADEQIGYYKDERDFPALPGTSQL 240 Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305 SPYL+ GVLSPRQC + +G +W+NEL+WREFY+H++ YP V + Sbjct: 241 SPYLAAGVLSPRQCLHAALAANRGEFDSGNAGVVTWVNELLWREFYKHILVGYPRVSRHR 300 Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365 F P TE + W + L AW+QG TG PIIDAAMRQL GWMHNRLRMI A FL K+L Sbjct: 301 AFRPETEAVAWRRAPEELAAWQQGRTGLPIIDAAMRQLLETGWMHNRLRMIVAMFLTKNL 360 Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425 L+DWR GE +FM L+DGDLA+NNGGWQW+ASTG D+ PYFRIFNP Q ++FD +G FI Sbjct: 361 LIDWREGERFFMRHLIDGDLAANNGGWQWSASTGTDAAPYFRIFNPISQSQKFDSEGRFI 420 Query: 426 RHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQY 474 RHWLPEL + + IH P S L YP PIVD ++ L + Sbjct: 421 RHWLPELAGLNKRDIHDPAS-LGGLFAPAGYPRPIVDLSRSRERALAAF 468 >gi|152989300|ref|YP_001350641.1| deoxyribodipyrimidine photolyase [Pseudomonas aeruginosa PA7] gi|150964458|gb|ABR86483.1| deoxyribodipyrimidine photolyase [Pseudomonas aeruginosa PA7] Length = 477 Score = 452 bits (1162), Expect = e-125, Method: Composition-based stats. Identities = 194/474 (40%), Positives = 271/474 (57%), Gaps = 9/474 (1%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 ++LVW R DLR +DN AL AA +A+++ +P QWR+H + + F +L ++ Sbjct: 1 MNLVWFRCDLRTSDNSALLAAA--DGRPCVALYLLSPAQWREHDDAPCKVDFWLRNLSEL 58 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128 Q+ L+ I C ++ + L C + + + N++Y NE RRD+ + + L+ Sbjct: 59 QRQLAALNIPLLVRDCEHWRQAPTVLGRLCSELGIGAVHVNQEYGANEQRRDQAVARHLR 118 Query: 129 HRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADL----RSLPVPAIR 183 + + D + PGS+L ++V++ FR+ + L QA R P P R Sbjct: 119 EQGVAFHEHLDQLFFAPGSVLTRGGGYFQVFSQFRRVCHERLYQALPAVQPRPQPQPPHR 178 Query: 184 LTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS 243 L + F P + ++P GE A LR F ++ + Y EQRD PA+ GTS Sbjct: 179 LLPGDPLPDAVPGFAAPGAGLRALWPAGETAAQQRLRDFAEQHLDDYHEQRDFPALPGTS 238 Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCM 303 QLSPYL+ GVLSPRQC + + GA +W+NEL+WREFY+H++ YP V Sbjct: 239 QLSPYLAAGVLSPRQCLDAALVANRGEFSGGRQGAATWINELLWREFYKHILVGYPRVSR 298 Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363 +PF TE + W + L+AW+QG TG PIIDAAMRQL GWMHNRLRM+ A FL K Sbjct: 299 HRPFREETEALRWRQAPAELEAWQQGRTGIPIIDAAMRQLLATGWMHNRLRMVVAMFLSK 358 Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423 +LL+DWR GE +FM L+DGDLA+NNGGWQW+ASTG D+VPYFR+FNP Q KRFDP+G Sbjct: 359 NLLIDWREGERWFMRHLIDGDLAANNGGWQWSASTGTDAVPYFRLFNPLSQSKRFDPRGE 418 Query: 424 FIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477 FIRHWLPEL + + IH P ++YP +VD K + L + Sbjct: 419 FIRHWLPELAGLERKAIHDPSRLGLFA--GVDYPQSMVDLKASRERALAAFRDL 470 >gi|153001581|ref|YP_001367262.1| deoxyribodipyrimidine photo-lyase [Shewanella baltica OS185] gi|151366199|gb|ABS09199.1| Deoxyribodipyrimidine photo-lyase [Shewanella baltica OS185] Length = 500 Score = 451 bits (1161), Expect = e-125, Method: Composition-based stats. Identities = 203/491 (41%), Positives = 285/491 (58%), Gaps = 15/491 (3%) Query: 1 MKATTAMSVHLVWLRNDLRITDNKALYAAC---HNSDAKVIAVFIATPEQWRQHGISARQ 57 M+ + L+W R DLR+ DN+AL AAC + + A++IATP QW++H ++ Q Sbjct: 13 MRIEVQGNNALMWFRQDLRLADNQALTAACDWARANGVALKAIYIATPTQWQRHDVAPIQ 72 Query: 58 SHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEV 117 FI + + + L+ GI F+ Q F D ++ YC QQ + ++F + EINE Sbjct: 73 LDFIERHINLLAQGLASLGIAFELIQLDTFADVPAFISDYCHQQGIDRVFAGSEPEINEQ 132 Query: 118 RRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSL 177 +RD+ +Q + D+ LL PG++LN + MYKV+TPF + + + + L Sbjct: 133 QRDQA---CIQAGIPLVLTDEHCLLKPGTVLNLSGDMYKVFTPFSRKWREIAARHAILPL 189 Query: 178 PVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIP 237 PVPA GPV P FF++ + ++ GE A IL F ++KV Y + RD P Sbjct: 190 PVPAP--LGPVLTEPKPHFFNHVTKVSSELWAAGEGQAKRILSAFIQQKVQDYKQDRDFP 247 Query: 238 AIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAF 297 AI GTS +SPYL+IGV+SPRQC L F ++++ S A +WLNEL WREFYRHL+ Sbjct: 248 AIDGTSSISPYLAIGVISPRQCVAALLHHFPEVIVDDTSPARTWLNELTWREFYRHLLVA 307 Query: 298 YPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMIT 357 +P + F + ++W + AW +G TG+PI+DAAMRQLN GWMHNRLRM+ Sbjct: 308 FPDLSKNHNFNRQADHVQWRNNPQEFAAWCEGRTGYPIVDAAMRQLNQTGWMHNRLRMVV 367 Query: 358 ASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKR 417 ASFL K LL+DWR GE YF +L+DGDLA+NNGGWQW+A G D+ PYFRIFNP Q ++ Sbjct: 368 ASFLTKHLLIDWRWGERYFRQKLIDGDLAANNGGWQWSAGCGCDAQPYFRIFNPISQSEK 427 Query: 418 FDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKN-------DLSLNYPLPIVDHKKACHHT 470 FDP G+FIR +LPEL + + +H P + + + YP IV+H A Sbjct: 428 FDPDGSFIRKYLPELASWGIKQLHQPSTAQTPSLFEQPLFNTKTAYPSAIVEHSAARARA 487 Query: 471 LNQYYAAKKQS 481 L KK + Sbjct: 488 LTVLGVLKKAT 498 >gi|262403201|ref|ZP_06079761.1| deoxyribodipyrimidine photolyase [Vibrio sp. RC586] gi|262350700|gb|EEY99833.1| deoxyribodipyrimidine photolyase [Vibrio sp. RC586] Length = 469 Score = 451 bits (1161), Expect = e-125, Method: Composition-based stats. Identities = 212/473 (44%), Positives = 293/473 (61%), Gaps = 8/473 (1%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 + LVWLR DLR DN AL AA + D V+AV++ATP+QW+QH ++ Q+ FI+ L + Sbjct: 1 MRLVWLRRDLRCVDNSALSAAIASGD-PVVAVYLATPKQWQQHHLAPIQADFIWRRLGAL 59 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL- 127 Q+ L++ + Y Q ++F D+ E + + ++F NR YE++E +RD E+RL Sbjct: 60 QQELAKLNVPLLYRQVADFHDAAEVICQLAKTLKAKQVFANRDYELDEQQRDLRTEQRLA 119 Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADL-RSLPVPAIRLTG 186 + ++ +FDD +LPPGS+ + +KV+TPF++A + + ++ P + Sbjct: 120 EQQIAWWAFDDKCILPPGSVRTQQGEFFKVFTPFKRAWLSLFQPPTIVKNSPALKGIIPS 179 Query: 187 PVTPSNIPRFFDYPFQAIDP-MFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245 +T + ++ +D +P+ + + LR FC+E+V Y + RD PA GTS L Sbjct: 180 ELTDWIWNSEQAFDYERVDSSQWPVEFETIRNQLRDFCRERVQDYHQWRDFPARTGTSSL 239 Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305 SPYL+IG LS RQC RL E ++ GA WL+ELIWREFY+HL+A P++ + Sbjct: 240 SPYLAIGALSARQCVARLYRESAMGVLG--EGAQVWLSELIWREFYQHLVAREPNLSKSR 297 Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365 F W +EW D Q W +G TG+PI+DAAMRQLN GWMHNRLRMI ASFL KDL Sbjct: 298 DFHEWGSHLEWWNDHEKFQRWCEGQTGYPIVDAAMRQLNQTGWMHNRLRMIVASFLTKDL 357 Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425 +DWR GE YFMSQL+DGD A+NNGGWQW ASTG D PYFRIFNP QG++FDP G FI Sbjct: 358 HIDWRWGERYFMSQLIDGDYAANNGGWQWCASTGCDGQPYFRIFNPVSQGEKFDPNGDFI 417 Query: 426 RHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478 R W+PEL + + YIH P ++ N + YP P+VDHK+ TL Y AK Sbjct: 418 RRWVPELRGLSSAYIHQPWTYPAVNSVL--YPAPLVDHKQEREVTLRLYKTAK 468 >gi|193077986|gb|ABO12900.2| deoxyribodipyrimidine photolyase (photoreactivation) FAD-binding [Acinetobacter baumannii ATCC 17978] Length = 480 Score = 451 bits (1161), Expect = e-124, Method: Composition-based stats. Identities = 195/477 (40%), Positives = 274/477 (57%), Gaps = 15/477 (3%) Query: 10 HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69 L+W R DLRI D+ AL+ A + + + I +PEQW+QH + + F L +Q Sbjct: 6 QLIWFRQDLRIHDHAALWHASQQGPS--LGLVILSPEQWKQHADAPIKIGFYLRQLRTLQ 63 Query: 70 KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL-Q 128 K L+ I + + ++ + + + ++ N + +NE++RDK ++ L + Sbjct: 64 KELAALHIPLVIQVIPYWKEIANFISDFSKKYNIENVYANIEIGVNELKRDKTVQDYLNR 123 Query: 129 HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLR-SLPVPAIRLTGP 187 H F D + P SI N + Q Y+V++ F+KA L + L PVP + P Sbjct: 124 HGKELFLFHDRTIFPLRSIRNQSQQPYQVFSAFKKACYTKLDTSGLPQCYPVPNKQNEVP 183 Query: 188 --------VTPSNIPRFFDYPFQAIDP-MFPIGEQNALHILRKFCKEKVYYYVEQRDIPA 238 + I + F ++P+GEQ AL L +F +E V +Y +RD P Sbjct: 184 LDFLQGKNIDLDEIEKLFCSSLSKEQQDLWPVGEQYALEQLDQFIEESVCHYKVERDFPN 243 Query: 239 IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFY 298 IQ TS+LSPYL+IG+LS RQC L G +WL+EL+WREFY+H++ + Sbjct: 244 IQATSKLSPYLNIGILSIRQCLQALFRNQHGNFHLVNEGQQTWLDELLWREFYQHILFDF 303 Query: 299 PSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITA 358 P V PF T+KI+WN + L AW+ G TG PI+DA MRQL GWMHNR+RMITA Sbjct: 304 PHVSKHIPFKKDTQKIKWNHNPEHLTAWQMGQTGIPIVDAGMRQLLQTGWMHNRVRMITA 363 Query: 359 SFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRF 418 FL K+LL+DWRIGE++FM L+DGDLA+NNGGWQW ASTG D+VPYFRIFNP Q K+F Sbjct: 364 MFLCKNLLIDWRIGEQWFMQHLIDGDLAANNGGWQWCASTGTDAVPYFRIFNPITQSKKF 423 Query: 419 DPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYY 475 DP+G +IR W+ EL ++ + IH P+S K DL LNYP PIVD K+ + + Sbjct: 424 DPEGEYIRQWVKELAHLDNKTIHEPYS--SKTDLGLNYPKPIVDLKETRLKAIETFK 478 >gi|213428164|ref|ZP_03360914.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp. enterica serovar Typhi str. E02-1180] Length = 427 Score = 451 bits (1160), Expect = e-124, Method: Composition-based stats. Identities = 225/430 (52%), Positives = 298/430 (69%), Gaps = 4/430 (0%) Query: 53 ISARQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQY 112 ++ RQ+ FI A L +Q +L++KGI +H+ ++F+ SIE + + C Q V+ LFYN QY Sbjct: 1 MAPRQAAFISAQLNALQTALAEKGIPLLFHEVADFNASIETVKNVCRQHDVSHLFYNYQY 60 Query: 113 EINEVRRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQA 172 E NE +RD +EK L VIC+ FDDSV+L PG+++ +MYKV+TPF+ A ++ L + Sbjct: 61 EFNERQRDAAVEKTLPS-VICEGFDDSVILAPGAVMTGNHEMYKVFTPFKNAWLKRLKED 119 Query: 173 DLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDP-MFPIGEQNALHILRKFCKEKVYYYV 231 +P P IR++G ++ P +YP QA D +FP+ E + LR FC + Y Sbjct: 120 IPPCVPAPKIRVSGALSIPLTPVSLNYPQQAFDAALFPVEENAVIAQLRHFCSQGADEYA 179 Query: 232 EQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFY 291 +RD PA+ GTS+LS L+ G LSPRQC +RL E L WLNELIWREFY Sbjct: 180 SRRDFPAVDGTSRLSASLATGGLSPRQCLHRLLAEQPQALDGGPGSV--WLNELIWREFY 237 Query: 292 RHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHN 351 RHLM +YP++C +PFI WT+++ W ++ H QAW++G TG+PI+DAAMRQLN GWMHN Sbjct: 238 RHLMTWYPALCKHQPFIRWTKRVAWQENPHYFQAWQKGETGYPIVDAAMRQLNATGWMHN 297 Query: 352 RLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNP 411 RLRMITASFLVKDLL+DWR+GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNP Sbjct: 298 RLRMITASFLVKDLLIDWRLGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNP 357 Query: 412 TIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTL 471 T Q +RFD G FIR WLP L ++P + IH P W +K + L+YP PIV+HK+A TL Sbjct: 358 TTQRERFDRDGEFIRQWLPALRDIPGKAIHEPWRWAEKAGVVLDYPRPIVEHKQARIATL 417 Query: 472 NQYYAAKKQS 481 + Y AA+K + Sbjct: 418 SAYEAARKGA 427 >gi|94501522|ref|ZP_01308040.1| Deoxyribodipyrimidine photolyase [Oceanobacter sp. RED65] gi|94426340|gb|EAT11330.1| Deoxyribodipyrimidine photolyase [Oceanobacter sp. RED65] Length = 478 Score = 451 bits (1160), Expect = e-124, Method: Composition-based stats. Identities = 208/471 (44%), Positives = 275/471 (58%), Gaps = 10/471 (2%) Query: 8 SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67 S + VW R DLR+ DN AL+ A N IA + +QW +H +S RQ I L Sbjct: 3 SFNAVWFRRDLRVHDNPALFHAMKNGQ--CIAFYCLAQKQWDEHQVSLRQRSLIRQQLED 60 Query: 68 VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127 + +SL+ G+ ++F + S Q V +LF N +YE+NEV K + + L Sbjct: 61 LTQSLAALGVPLIVIDTADFKSIPKTFVSVLQQYNVEQLFCNAEYEVNEVALTKNVTEAL 120 Query: 128 QHR-VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 Q + + C + D L+ PG I+N Q YKV+T F+KA + L P+P + Sbjct: 121 QQQDIKCHEYHDQCLIQPGVIVNKQDQPYKVFTAFKKAYLAQLDIYMRDLYPLPK-KQQA 179 Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246 P ++I IDP + EQ AL L +FCK+++ Y RDIP++ GTS LS Sbjct: 180 PKVKTDISALQSIAQVDIDP-WQGSEQVALDALDEFCKDRIKAYKRDRDIPSLDGTSTLS 238 Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP 306 PYL+IG LS RQCW ++ G +W +ELIWR+FYRHL+ F+P VC K Sbjct: 239 PYLAIGSLSVRQCWQMSQQVSPS--GSKPEGIATWQSELIWRDFYRHLIYFFPHVCQYKA 296 Query: 307 FIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLL 366 F T+ + W KD L QAW G TG+P++DAAMRQLN GWMHNRLRM+ A FL K L Sbjct: 297 FKQETDHLPWKKDQALFQAWCDGRTGYPLVDAAMRQLNQTGWMHNRLRMVAAMFLSKHLF 356 Query: 367 VDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIR 426 +DWR+GE YFM QL+DGDLASNNGGWQW+ASTG D+VPYFRIFNP Q +RFD +GTF+R Sbjct: 357 IDWRLGEAYFMQQLIDGDLASNNGGWQWSASTGVDAVPYFRIFNPIRQSERFDSKGTFLR 416 Query: 427 HWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477 ++PEL ++ + IH P K L YP PIVDHK+A T + Sbjct: 417 QYVPELASLDDKRIHNPDPITVK---KLGYPAPIVDHKQAVVQTKQWFKEL 464 >gi|269139942|ref|YP_003296643.1| deoxyribodipyrimidine photo-lyase [Edwardsiella tarda EIB202] gi|267985603|gb|ACY85432.1| deoxyribodipyrimidine photo-lyase [Edwardsiella tarda EIB202] gi|304559777|gb|ADM42441.1| Deoxyribodipyrimidine photolyase [Edwardsiella tarda FL6-60] Length = 471 Score = 451 bits (1159), Expect = e-124, Method: Composition-based stats. Identities = 242/468 (51%), Positives = 316/468 (67%), Gaps = 5/468 (1%) Query: 12 VWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQKS 71 +WLR+DLR+TDN+AL+AAC ++ A+V+A+++ATP QW ++ RQ+ FI+ +L +Q++ Sbjct: 1 MWLRSDLRMTDNRALHAACADARARVVALYVATPRQWLAQEMAPRQAQFIWQNLSALQEA 60 Query: 72 LSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHRV 131 L Q+ I ++ + CL++R LF NRQYE+NE RRD L L Sbjct: 61 LGQRQIPLYCLSVDDYAAQARTVREVCLRERADALFANRQYELNERRRDDALAAALP--F 118 Query: 132 ICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPS 191 C FDD++LL PG++L A M+KV+TPF++A ++ L ADLR LP P+ R P+ Sbjct: 119 PCHFFDDALLLAPGAVLTGAGAMFKVFTPFKRAFLRGLASADLRVLPAPSPRQPIAAAPT 178 Query: 192 NIPRFFDYPFQAIDP-MFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLS 250 + R DYP A+D +FP GE A L +FC + Y +RD PA GTSQLSPYL+ Sbjct: 179 PVARV-DYPDAAVDSALFPAGETAAQVRLAQFCHGALATYAARRDFPAQAGTSQLSPYLT 237 Query: 251 IGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPW 310 +GVLSPRQ + P SGA +WLNELIWREFYRHL+ +P +C +PFIPW Sbjct: 238 LGVLSPRQ-CLAALQAQALASPSPSSGAEAWLNELIWREFYRHLLVAWPDLCRHRPFIPW 296 Query: 311 TEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWR 370 T +I W D LQ W+QG TGFP++DAAMRQLN GWMHNRLRM+TASFLVKDLL+DWR Sbjct: 297 TARIRWRDDPAGLQRWQQGMTGFPLVDAAMRQLNRCGWMHNRLRMLTASFLVKDLLIDWR 356 Query: 371 IGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLP 430 +GE YF+ QL+DGDLA+NNGGWQWAASTG+D+ PYFRIFNP +QG+R+DPQG FIR WLP Sbjct: 357 LGERYFLRQLIDGDLAANNGGWQWAASTGSDAAPYFRIFNPRVQGQRYDPQGQFIRRWLP 416 Query: 431 ELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478 EL VP IH P W + L+YP P+VDH +A TL + A+ Sbjct: 417 ELREVPDSDIHHPQRWALRQRRVLDYPDPLVDHARARQDTLLAFARAR 464 >gi|28901326|ref|NP_800981.1| deoxyribodipyrimidine photolyase [Vibrio parahaemolyticus RIMD 2210633] gi|260362883|ref|ZP_05775752.1| deoxyribodipyrimidine photo-lyase [Vibrio parahaemolyticus K5030] gi|260880171|ref|ZP_05892526.1| deoxyribodipyrimidine photo-lyase [Vibrio parahaemolyticus AN-5034] gi|260895288|ref|ZP_05903784.1| deoxyribodipyrimidine photo-lyase [Vibrio parahaemolyticus Peru-466] gi|28809873|dbj|BAC62814.1| deoxyribodipyrimidine photolyase [Vibrio parahaemolyticus RIMD 2210633] gi|308085662|gb|EFO35357.1| deoxyribodipyrimidine photo-lyase [Vibrio parahaemolyticus Peru-466] gi|308091875|gb|EFO41570.1| deoxyribodipyrimidine photo-lyase [Vibrio parahaemolyticus AN-5034] gi|308112450|gb|EFO49990.1| deoxyribodipyrimidine photo-lyase [Vibrio parahaemolyticus K5030] Length = 471 Score = 451 bits (1159), Expect = e-124, Method: Composition-based stats. Identities = 207/476 (43%), Positives = 284/476 (59%), Gaps = 10/476 (2%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 + LVW R DLR D+ AL AA V+A FIATPEQW++H ++ Q+ I L V Sbjct: 1 MILVWFRRDLRTLDHTALKAALDTGQ-PVVACFIATPEQWQEHHMAPMQADLIARRLEHV 59 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128 + L++ I Y + FDD + + + + T N YE+NEV D+ + + L Sbjct: 60 HQELTELNIPLLYKEVPRFDDCTQVICDWADKLNATAAMVNINYEVNEVELDRKVSQALD 119 Query: 129 HRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNL----VQADLRSLPVPAIR 183 +R + +F D + P ++LN + +KV+TPF++A +Q V R +P+ + Sbjct: 120 NRGVEFHAFHDKCVHAPTTVLNKQGEYFKVFTPFKRAWLQKFSLPTVSKPQRQNELPSAQ 179 Query: 184 LTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS 243 L F + + + + L LR F +E+ Y +RD PAI GTS Sbjct: 180 LAAVKQDGFDADFTFSYPRESSEAWCVSTNDILKQLRTFARERSDGYQMKRDFPAIDGTS 239 Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCM 303 QLSPYL+IG LSPRQC RL E + G +WL+E+IWREFY+HL+ F P + Sbjct: 240 QLSPYLAIGALSPRQCIARLYAENPQPDL--SEGKATWLSEIIWREFYQHLLVFEPKLVK 297 Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363 G+ FI W +KI+W+ D + WK G TG+PI+DAAMRQLN GWMHNRLRMI ASFL K Sbjct: 298 GRGFIDWEDKIQWSYDEQAFECWKTGTTGYPIVDAAMRQLNQTGWMHNRLRMIVASFLTK 357 Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423 DL +DWR GEEYFMS+L+DGD A+NNGGWQW+ASTG D PYFRIFNP QG++FD G Sbjct: 358 DLHIDWRWGEEYFMSKLVDGDFAANNGGWQWSASTGCDGQPYFRIFNPISQGEKFDSDGQ 417 Query: 424 FIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479 F+RHW+PE+ +VP +++H P +W + L Y P+VDHK TL + +AK+ Sbjct: 418 FVRHWVPEIKSVPNKFVHKPWTWEGFSLLE--YHKPMVDHKVEREITLRLFKSAKE 471 >gi|192360182|ref|YP_001982413.1| deoxyribodipyrimidine photolyase [Cellvibrio japonicus Ueda107] gi|190686347|gb|ACE84025.1| deoxyribodipyrimidine photolyase [Cellvibrio japonicus Ueda107] Length = 476 Score = 451 bits (1159), Expect = e-124, Method: Composition-based stats. Identities = 192/475 (40%), Positives = 280/475 (58%), Gaps = 10/475 (2%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 LVW RNDLR+ DN ALY A V+AV++ + I+ + FI LL + Sbjct: 2 TALVWFRNDLRVRDNPALYKAAEEKQG-VLAVYVHCEAYVGRFPIAPARLDFIRRHLLVL 60 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128 + L+Q I + + + L + Q + K F+N +Y ++E+ RD + + L+ Sbjct: 61 VRELAQLNIPLRLIAVNRAEQIAPALAALVTQYNIDKCFFNAEYPLDELARDHQVNQLLR 120 Query: 129 HRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG- 186 + + K D V++PPG I + YKV+T F++ +Q ++ L+ L +P + Sbjct: 121 AQGVLVKRCHDRVIVPPGMIRTGNGEPYKVFTAFKRKWLQTVMPLHLQPLGLPDKQAQPM 180 Query: 187 ---PVTPSNIPRFF-DYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGT 242 PVT ++I R F ++ + ++ ++P GE A L F + + +Y ++RD PA+QGT Sbjct: 181 PVKPVTQADINRLFGEHSVRDLEHLWPAGEDEACARLDSFIESGLTHYQDKRDFPALQGT 240 Query: 243 SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVC 302 S LSPYL+IG LSPRQ + + + + +GA W++ELIWREFY+H++ +P VC Sbjct: 241 STLSPYLAIGSLSPRQAISSVL-CYTQGDWESNAGASCWISELIWREFYQHVVVDFPQVC 299 Query: 303 MGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLV 362 + TE W KD W QG TG P++DAAMRQL GWMHNRLRM+ A FL Sbjct: 300 KHRAMQVHTEAFPWKKDKKQFSRWCQGNTGIPLVDAAMRQLVMTGWMHNRLRMVVAMFLT 359 Query: 363 KDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQG 422 K+L +DWR+GE +FM L+DGD A+NNGGWQW+ASTG D+ PYFR+FNP Q +RFDPQG Sbjct: 360 KNLQIDWRLGERFFMEHLIDGDFAANNGGWQWSASTGTDAAPYFRVFNPISQSERFDPQG 419 Query: 423 TFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477 FIR W+PEL +VP +YIH P + DK+ SL YP P+VD ++ T+ + Sbjct: 420 DFIRSWIPELADVPLKYIHNPSA--DKSFSSLQYPAPMVDLAESRKSTIALFSQL 472 >gi|193216116|ref|YP_001997315.1| deoxyribodipyrimidine photo-lyase [Chloroherpeton thalassium ATCC 35110] gi|193089593|gb|ACF14868.1| Deoxyribodipyrimidine photo-lyase [Chloroherpeton thalassium ATCC 35110] Length = 477 Score = 451 bits (1159), Expect = e-124, Method: Composition-based stats. Identities = 184/483 (38%), Positives = 253/483 (52%), Gaps = 19/483 (3%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQW-RQHGISARQSHFIYASL 65 M+ +VW R DLRI D+ AL A +D ++I +FI + R+ S F+ SL Sbjct: 1 MNRIIVWHRRDLRIFDHSALAEAAKFAD-EIIPIFILDDDILLRREDFSPACVGFMLESL 59 Query: 66 LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125 + S + G + +E L S + R +++N YE RD+ ++ Sbjct: 60 EALALSYANIGGKLIVRRG----QVLEVLKSLVGETRAQAIYFNEDYEPFAKMRDQAVQS 115 Query: 126 RLQH-RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL 184 + V K+F D V P +L Q Y V+TP++K + L P Sbjct: 116 EFEKLGVRVKAFTDQVCFHPQRVLKDNGQPYTVFTPYQKKWLA-LSGNIPTPQPALTRIS 174 Query: 185 TGPVTPSNIPRFFDYPFQ-AIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS 243 T + +P+ D + ++ P+ GE L LR F + +Y+Y E RD PA TS Sbjct: 175 TPELPSIPLPKTSDIRKKFSVQPIVQGGEPKGLKRLRAFLSQNIYHYKELRDFPATNATS 234 Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCM 303 LS L G LS R ++ + G ++++ELIWREFY ++ +P V Sbjct: 235 LLSADLRFGTLSIRHVFHESMRLVPQASEPAREGIQTFISELIWREFYFQILDHFPHVEK 294 Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363 F P E ++W + +AWK G TG+PI+DAAMR L GWMHNRLRMI ASFL K Sbjct: 295 H-SFKPEFENLKWENNEVFFEAWKNGQTGYPIVDAAMRALRQTGWMHNRLRMIVASFLTK 353 Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423 DLL+DWR GE YFM L+DGDLA+NNGGWQW+ASTG D+ PYFRIFNP +Q ++FDP+G Sbjct: 354 DLLIDWRWGELYFMQHLIDGDLAANNGGWQWSASTGTDAQPYFRIFNPVLQSQKFDPKGE 413 Query: 424 FIRHWLPELNNVPTQYIHAPHSWLDKN---------DLSLNYPLPIVDHKKACHHTLNQY 474 FIR ++PEL VP +YIH P L K+ L +YP PIV+HK L Y Sbjct: 414 FIRKYVPELQAVPVRYIHFPAEILRKSPLLAREIGVALGKDYPHPIVEHKVQREKALRLY 473 Query: 475 YAA 477 A Sbjct: 474 KAM 476 >gi|260549666|ref|ZP_05823883.1| deoxyribodipyrimidine photolyase FAD-binding [Acinetobacter sp. RUH2624] gi|260407183|gb|EEX00659.1| deoxyribodipyrimidine photolyase FAD-binding [Acinetobacter sp. RUH2624] Length = 480 Score = 449 bits (1156), Expect = e-124, Method: Composition-based stats. Identities = 190/479 (39%), Positives = 275/479 (57%), Gaps = 15/479 (3%) Query: 10 HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69 L+W R DLRI D+ AL+ AC + I + I +PEQW+QH + + F L ++Q Sbjct: 6 QLIWFRQDLRIHDHAALWHACQQGPS--IGLVILSPEQWKQHDDAPIKISFYLRQLKELQ 63 Query: 70 KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL-Q 128 K L+ I ++D+ +++ + + + ++ N + NE++RDK ++ L + Sbjct: 64 KELASLHIPLVIQVIPYWEDTAKFISDFSKKYNIENVYANIEMGANELKRDKTVQDSLNK 123 Query: 129 HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLR---SLPVPAIRLT 185 F D + P SI N + Q Y+V++ F+KA L + L LP ++ Sbjct: 124 ESKELFLFHDRTIFPLRSIRNQSQQPYQVFSAFKKACYAKLNTSGLPQCFPLPHKQNEIS 183 Query: 186 GPVTPSNIPRFFDYP-------FQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPA 238 + + ++P+GE AL L +F ++ V +Y +RD P Sbjct: 184 LEFLDEKSVDLAEIEKLFCSSISKEQQDLWPVGESYALEQLDQFVEDSVSHYKVERDFPH 243 Query: 239 IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFY 298 + GTS+LSPYL+IG+LS RQC L G +WL+ELIWREFY+H++ + Sbjct: 244 VHGTSKLSPYLNIGILSVRQCLQALFRNQHGNFHLDNEGQQTWLDELIWREFYQHILFDF 303 Query: 299 PSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITA 358 P V PF T+KI+WN + L+AW+ G TG PI+DA MRQL GWMHNR+RMITA Sbjct: 304 PYVSKHLPFKKDTQKIKWNHNPEHLKAWQTGQTGIPIVDAGMRQLLQTGWMHNRVRMITA 363 Query: 359 SFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRF 418 FL K+LL+DWRIGE++FM L+DGDLA+NNGGWQW ASTG D+VPYFRIFNP Q ++F Sbjct: 364 MFLCKNLLIDWRIGEQWFMQHLIDGDLAANNGGWQWCASTGTDAVPYFRIFNPISQSQKF 423 Query: 419 DPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477 DP G +IR W+ EL ++ + IH P+S +K +LSLNYP PIVD K+ + + Sbjct: 424 DPNGDYIRKWVKELAHLDNKSIHDPYS--NKINLSLNYPKPIVDLKETRLKAIETFKHI 480 >gi|217972489|ref|YP_002357240.1| Deoxyribodipyrimidine photo-lyase [Shewanella baltica OS223] gi|217497624|gb|ACK45817.1| Deoxyribodipyrimidine photo-lyase [Shewanella baltica OS223] Length = 499 Score = 449 bits (1156), Expect = e-124, Method: Composition-based stats. Identities = 200/490 (40%), Positives = 285/490 (58%), Gaps = 14/490 (2%) Query: 1 MKATTAMSVHLVWLRNDLRITDNKALYAAC---HNSDAKVIAVFIATPEQWRQHGISARQ 57 M+ + L+W R DLR+ DN+AL AAC + + A++IATP QW++H ++ Q Sbjct: 13 MRIEVQGNNALMWFRQDLRLADNQALSAACDWARENGVALKAIYIATPTQWQRHDVAPIQ 72 Query: 58 SHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEV 117 FI + + + L+ GI+F+ Q F D ++ YC QQ ++++F + EINE Sbjct: 73 LDFIERHINLLAQGLASLGIIFELIQLDTFADVPAFISDYCQQQGISRVFAGSEPEINEQ 132 Query: 118 RRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSL 177 +RD+ +Q + ++ LL PG++LN + MYKV+TPF + + + + L Sbjct: 133 QRDQA---CIQVGIPLVLTEEHCLLKPGTVLNLSGDMYKVFTPFSRKWREIAARHAILPL 189 Query: 178 PVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIP 237 PVPA GPV P F+ + ++ GE A IL F ++KV Y + RD P Sbjct: 190 PVPAP--LGPVLTEPKPHLFNNVTKVSSELWAAGEGQAKRILSAFIQQKVQDYKQDRDFP 247 Query: 238 AIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAF 297 +I GTS +SPYL+IGV+SPRQC L +F ++++ S A +WLNEL WREFYRHL+ Sbjct: 248 SIDGTSSISPYLAIGVVSPRQCVAALLHDFPEVIVDDTSPARTWLNELTWREFYRHLLVA 307 Query: 298 YPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMIT 357 +P + F + ++W + AW +G TG+PI+DAAMRQLN GWMHNRLRM+ Sbjct: 308 FPDLSKNHNFNRQADHVQWRNNPQEFAAWCEGRTGYPIVDAAMRQLNQTGWMHNRLRMVV 367 Query: 358 ASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKR 417 ASFL K LL+DWR GE YF +L+DGDLA+NNGGWQW+A G D+ PYFRIFNP Q ++ Sbjct: 368 ASFLTKHLLIDWRWGERYFRQKLIDGDLAANNGGWQWSAGCGCDAQPYFRIFNPMSQSEK 427 Query: 418 FDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDL------SLNYPLPIVDHKKACHHTL 471 FDP G+FIR +LPEL + + +H P + + YP IV+H A L Sbjct: 428 FDPDGSFIRKYLPELASWGIKQLHQPSTAQTPSLFDQPLFTKTAYPSAIVEHSAARSRAL 487 Query: 472 NQYYAAKKQS 481 KK + Sbjct: 488 TVLGVLKKAA 497 >gi|260556618|ref|ZP_05828836.1| deoxyribodipyrimidine photolyase FAD-binding [Acinetobacter baumannii ATCC 19606] gi|260409877|gb|EEX03177.1| deoxyribodipyrimidine photolyase FAD-binding [Acinetobacter baumannii ATCC 19606] Length = 480 Score = 449 bits (1155), Expect = e-124, Method: Composition-based stats. Identities = 196/477 (41%), Positives = 274/477 (57%), Gaps = 15/477 (3%) Query: 10 HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69 L+W R DLRI D+ AL+ A + + + I +PEQW+QH + + F L +Q Sbjct: 6 QLIWFRQDLRIHDHAALWHASQQGPS--LGLVILSPEQWKQHADAPIKIGFYLRQLRTLQ 63 Query: 70 KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL-Q 128 K L+ I + + ++ + + + ++ N + +NE++RDK ++ L + Sbjct: 64 KELAALHIPLVIQVIPYWKEIANFISDFSKKYNIENVYANIEIGVNELKRDKTVQDYLNR 123 Query: 129 HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLR-SLPVPAIRLTGP 187 H F D + P SI N + Q Y+V++ F+KA L + L PVP + P Sbjct: 124 HGKELFLFHDRTIFPLRSIRNQSQQPYQVFSAFKKACYTKLDTSGLPQCYPVPNKQNEVP 183 Query: 188 --------VTPSNIPRFFDYPFQAIDP-MFPIGEQNALHILRKFCKEKVYYYVEQRDIPA 238 + I + F ++P+GEQ AL L +F +E V +Y +RD P Sbjct: 184 LDFLQGKNIDLDEIEKLFCPSLSKEQQDLWPVGEQYALEQLDQFIEESVCHYKLERDFPH 243 Query: 239 IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFY 298 IQGTS+LSPYL+IG+LS RQC L G WL+EL+WREFY+H++ + Sbjct: 244 IQGTSKLSPYLNIGILSIRQCLQALFRNQHGNFHLVNEGQQIWLDELLWREFYQHILFDF 303 Query: 299 PSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITA 358 P V PF T+KI+WN + L AW+ G TG PI+DA MRQL GWMHNR+RMITA Sbjct: 304 PHVSKHIPFKKDTQKIKWNHNPEHLTAWQTGQTGIPIVDAGMRQLLQTGWMHNRIRMITA 363 Query: 359 SFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRF 418 FL K+LL+DWRIGE++FM L+DGDLA+NNGGWQW ASTG D+VPYFRIFNP Q K+F Sbjct: 364 MFLCKNLLIDWRIGEQWFMQHLIDGDLAANNGGWQWCASTGTDAVPYFRIFNPIAQSKKF 423 Query: 419 DPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYY 475 DP+G +IR W+ EL ++ + IH P+S K DL LNYP PIVD K+ + + Sbjct: 424 DPEGEYIRQWVKELAHLDNKTIHEPYS--SKTDLGLNYPKPIVDLKETRLKAIETFK 478 >gi|304410099|ref|ZP_07391718.1| Deoxyribodipyrimidine photo-lyase [Shewanella baltica OS183] gi|307302189|ref|ZP_07581947.1| Deoxyribodipyrimidine photo-lyase [Shewanella baltica BA175] gi|304351508|gb|EFM15907.1| Deoxyribodipyrimidine photo-lyase [Shewanella baltica OS183] gi|306914227|gb|EFN44648.1| Deoxyribodipyrimidine photo-lyase [Shewanella baltica BA175] Length = 503 Score = 449 bits (1155), Expect = e-124, Method: Composition-based stats. Identities = 201/490 (41%), Positives = 282/490 (57%), Gaps = 14/490 (2%) Query: 1 MKATTAMSVHLVWLRNDLRITDNKALYAAC---HNSDAKVIAVFIATPEQWRQHGISARQ 57 M + L+W R DLR+ DN+AL AAC + + A++IATP QW++H ++ Q Sbjct: 18 MSIEVQGNNALMWFRQDLRLADNQALSAACDWARENGVALKAIYIATPTQWQRHDVAPIQ 77 Query: 58 SHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEV 117 FI + + + L+ GI F+ Q F D ++ YC QQ ++++F + EINE Sbjct: 78 LDFIERHINLLAQGLASLGITFELIQLDTFADVPAFISDYCQQQGISRVFAGSEPEINEQ 137 Query: 118 RRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSL 177 +RD+ +Q + ++ LL PG++LN + MYKV+TPF + + + + L Sbjct: 138 QRDQA---CIQAGIPLVLTEEHCLLKPGTVLNLSGDMYKVFTPFSRKWREIAARHAILPL 194 Query: 178 PVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIP 237 PVPA GPV P F+ + ++ GE A IL F ++KV Y + RD P Sbjct: 195 PVPAP--LGPVLTEPKPHLFNNVIKVSSELWAAGEGQAKRILSAFIQQKVQDYKQDRDFP 252 Query: 238 AIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAF 297 AI GTS +SPYL+IGV+SPRQC L +F ++++ S A +WLNEL WREFYRHL+ Sbjct: 253 AIDGTSSISPYLAIGVVSPRQCVAALLHDFPEVIVDDTSPARTWLNELTWREFYRHLLVA 312 Query: 298 YPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMIT 357 +P + F + ++W + AW +G TG+PI+DAAMRQLN GWMHNRLRM+ Sbjct: 313 FPDLSKNHNFNRQADHVQWRNNPQEFAAWCEGRTGYPIVDAAMRQLNQTGWMHNRLRMVV 372 Query: 358 ASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKR 417 ASFL K LL+DWR GE YF +L+DGDLA+NNGGWQW+A G D+ PYFRIFNP Q ++ Sbjct: 373 ASFLTKHLLIDWRWGERYFRQKLIDGDLAANNGGWQWSAGCGCDAQPYFRIFNPMSQSEK 432 Query: 418 FDPQGTFIRHWLPELNNVPTQYIHA------PHSWLDKNDLSLNYPLPIVDHKKACHHTL 471 FDP G+FIR +LPEL + + +H P + YP IV+H A L Sbjct: 433 FDPDGSFIRKYLPELASWGIKQLHQSSTAQTPSLFDQPLFTKTAYPSAIVEHSAARARAL 492 Query: 472 NQYYAAKKQS 481 KK + Sbjct: 493 TVLGVLKKAA 502 >gi|327480577|gb|AEA83887.1| deoxyribodipyrimidine photolyase [Pseudomonas stutzeri DSM 4166] Length = 476 Score = 449 bits (1155), Expect = e-124, Method: Composition-based stats. Identities = 197/470 (41%), Positives = 279/470 (59%), Gaps = 7/470 (1%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 L+WLR+DLR +DN AL +A +AV++ TP QW H +A + F +L+++ Sbjct: 2 TQLIWLRSDLRTSDNTALASAMAAG--PTVAVYLITPGQWLAHDDAACKVDFWLRNLVEL 59 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128 L + ++ + + L C + V +L YN +Y +NE RRD+ + RL+ Sbjct: 60 AGRLQALNVPLLIRDAEDWQAAPDALLKLCQELAVQRLHYNDEYGVNEQRRDQAVAARLR 119 Query: 129 HRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187 I + + D +L PGS+L + +KV+ FR+A + L + + PA + Sbjct: 120 AAGIDVRGYLDQLLFAPGSVLTQSGGYFKVFGQFRRACLARLSMSLPACVAPPAPQQPMT 179 Query: 188 VT---PSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244 VT P + R FD P + ++P GE A H L F ++ ++ Y ++RD+PA GTSQ Sbjct: 180 VTSDVPPDEVRGFDRPSDYLRTLWPAGETFAQHRLAAFIEDDLHQYHQRRDLPAEPGTSQ 239 Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304 LS YL+ GV+S RQC + L +GA +W+NEL+WREFY+H++ YP V M Sbjct: 240 LSAYLAAGVISIRQCLHAAVASNRGELDSGSAGATTWINELLWREFYKHILVGYPRVSMH 299 Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364 + F TE + W + + LQAW++G TGFPIIDAAMRQL GWMHNRLRM+TA FL K+ Sbjct: 300 RAFRAETEALPWRRATDELQAWQEGRTGFPIIDAAMRQLRETGWMHNRLRMVTAMFLSKN 359 Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424 LL+DWR GE +FM L+DGDLA+NNGGWQW+ASTG DSVPYFR+FNP Q +RFDP G F Sbjct: 360 LLIDWREGERWFMRNLIDGDLAANNGGWQWSASTGTDSVPYFRLFNPISQSQRFDPDGQF 419 Query: 425 IRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQY 474 +R WLPEL + + IH P S +YP PI+D ++ L+ + Sbjct: 420 LRRWLPELQGLGKREIHNP-SAQRSLFGKADYPAPIIDLGESRARALDAF 468 >gi|213581260|ref|ZP_03363086.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp. enterica serovar Typhi str. E98-0664] Length = 426 Score = 449 bits (1154), Expect = e-124, Method: Composition-based stats. Identities = 225/428 (52%), Positives = 296/428 (69%), Gaps = 4/428 (0%) Query: 55 ARQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEI 114 RQ+ FI A L +Q +L++KGI +H+ ++F+ SIE + + C Q V+ LFYN QYE Sbjct: 2 PRQAAFISAQLNALQTALAEKGIPLLFHEVADFNASIETVKNVCRQHDVSHLFYNYQYEF 61 Query: 115 NEVRRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADL 174 NE +RD +EK L VIC+ FDDSV+L PG+++ +MYKV+TPF+ A ++ L + Sbjct: 62 NERQRDAAVEKTLPS-VICEGFDDSVILAPGAVMTGNHEMYKVFTPFKNAWLKRLKEDIP 120 Query: 175 RSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDP-MFPIGEQNALHILRKFCKEKVYYYVEQ 233 +P P IR++G ++ P +YP QA D +FP+ E + LR FC + Y + Sbjct: 121 PCVPAPKIRVSGALSIPLTPVSLNYPQQAFDAALFPVEENAVIAQLRHFCSQGADEYASR 180 Query: 234 RDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRH 293 RD PA+ GTS+LS L+ G LSPRQC +RL E L WLNELIWREFYRH Sbjct: 181 RDFPAVDGTSRLSASLATGGLSPRQCLHRLLAEQPQALDGGPGSV--WLNELIWREFYRH 238 Query: 294 LMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRL 353 LM +YP++C +PFI WT+++ W ++ H QAW++G TG+PI+DAAMRQLN GWMHNRL Sbjct: 239 LMTWYPALCKHQPFIRWTKRVAWQENPHYFQAWQKGETGYPIVDAAMRQLNATGWMHNRL 298 Query: 354 RMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTI 413 RMITASFLVKDLL+DWR+GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT Sbjct: 299 RMITASFLVKDLLIDWRLGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTT 358 Query: 414 QGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQ 473 Q +RFD G FIR WLP L ++P + IH P W +K + L+YP PIV+HK+A TL+ Sbjct: 359 QRERFDRDGEFIRQWLPALRDIPGKAIHEPWRWAEKAGVVLDYPRPIVEHKQARIATLSA 418 Query: 474 YYAAKKQS 481 Y AA+K + Sbjct: 419 YEAARKGA 426 >gi|170723611|ref|YP_001751299.1| deoxyribodipyrimidine photo-lyase [Pseudomonas putida W619] gi|169761614|gb|ACA74930.1| Deoxyribodipyrimidine photo-lyase [Pseudomonas putida W619] Length = 480 Score = 448 bits (1153), Expect = e-124, Method: Composition-based stats. Identities = 194/476 (40%), Positives = 275/476 (57%), Gaps = 7/476 (1%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 + L+WLR+DLR+ DN AL AAC +A+++A+P QW+ H +A + F +L + Sbjct: 1 MQLIWLRSDLRVNDNTALSAACERG--PAVALWLASPGQWQAHDDAACKVDFWLRNLRDL 58 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128 ++SL I + +D + + L C Q ++ + +N +Y INE RD+ L+ Sbjct: 59 RQSLEGLNIPLLVRRIDTWDQAAQTLLDVCRQHKIEAVHWNDEYGINENSRDQATRALLE 118 Query: 129 H-RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187 V ++ D +L PGS+L + ++V++ F+K +++L ++ P + Sbjct: 119 ASGVQAHNYLDQLLFRPGSVLTRSGDYFQVFSQFKKVCLEHLHRSLPSQAPRVKRQAPVG 178 Query: 188 VTPSNIPRF---FDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244 + IP+ FD P +A+ +P GE A L +F E + Y RD+PA GTSQ Sbjct: 179 IASDPIPQHIEGFDKPSRALSEHWPAGEDEAQARLSRFVDETIEDYHHLRDLPAKPGTSQ 238 Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304 LS YL+ GV+SPRQC + +G +W+NEL+WREFY+H++ YP V Sbjct: 239 LSAYLAAGVISPRQCLHAALASNRGEFDSGSTGTQTWINELLWREFYKHILTGYPQVSRH 298 Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364 + F TE + W L+AW+QG TGFPIIDAAMRQL GWMHNRLRMI A FL K+ Sbjct: 299 RAFRTHTELLPWRDAPADLEAWEQGRTGFPIIDAAMRQLLHTGWMHNRLRMIVAMFLSKN 358 Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424 LL+DWR+GE +FM L+DGDLA+NNGGWQW+ASTG D+VPYFRIFNP Q +RFDPQG F Sbjct: 359 LLIDWRLGERHFMRHLIDGDLAANNGGWQWSASTGTDAVPYFRIFNPVSQSQRFDPQGHF 418 Query: 425 IRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQ 480 IRHW+PEL + + IH P D +Y PIVD + L + + Sbjct: 419 IRHWVPELRGLDEKSIHQPTQNKD-LFADNSYHRPIVDLSSSRQRALEAFKGLSRS 473 >gi|70732464|ref|YP_262226.1| deoxyribodipyrimidine photolyase [Pseudomonas fluorescens Pf-5] gi|68346763|gb|AAY94369.1| deoxyribodipyrimidine photolyase [Pseudomonas fluorescens Pf-5] Length = 481 Score = 448 bits (1152), Expect = e-123, Method: Composition-based stats. Identities = 192/473 (40%), Positives = 273/473 (57%), Gaps = 7/473 (1%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 + L+WLR+DLR+ DN AL A +AV++ +PEQW H + + F +L + Sbjct: 1 MQLIWLRSDLRLHDNTALSA--AAQRGAAVAVYLLSPEQWLAHDDAPCKIDFWLRNLQSL 58 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128 +L + I + ++ + + L C Q +V L +N++Y I+E RRD + + LQ Sbjct: 59 STALGRLNIPLLIRSAATWEQAPQVLLELCRQLQVQMLHFNQEYGIHESRRDAAVTRALQ 118 Query: 129 HRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187 H I + D +L PGS+L + ++V++ FRK L A + P +L Sbjct: 119 HAGISVQGHLDQLLFQPGSVLTKSGGYFQVFSQFRKVCYSRLHTALPALVKAPGAQLPLS 178 Query: 188 VTPSNIPR---FFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244 + +P+ F P QA+ ++P G+ A L KF E+++YY +RD PA GTSQ Sbjct: 179 INADPLPQRVEGFPSPTQALRELWPAGDDEAQRRLEKFSDEQIHYYQSERDFPAKPGTSQ 238 Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304 LSPYL+ GV+SPRQC + GA +W+NEL+WREFY+H++ YP V Sbjct: 239 LSPYLAAGVISPRQCLHAALRGNQGEFESGSPGAVTWINELLWREFYKHILVGYPRVSRH 298 Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364 + F P TE ++W L AW++ TG PIIDAAMRQL GWMHNRLRM+ A FL K+ Sbjct: 299 RAFRPETEAVKWRHAPEELAAWQEARTGLPIIDAAMRQLLETGWMHNRLRMVVAMFLTKN 358 Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424 LL+DWR GE +FM L+DGDLA+NNGGWQW++STG DS PYFRIFNP Q ++FD +G F Sbjct: 359 LLIDWREGERFFMRHLIDGDLAANNGGWQWSSSTGTDSAPYFRIFNPISQSQKFDSEGRF 418 Query: 425 IRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477 I+HWLP+L + + IH P + + YP PIVD ++ L + A Sbjct: 419 IKHWLPQLAGLNKKDIHNPAAMGGLFGVP-GYPAPIVDLSRSRERALAAFKAL 470 >gi|260901113|ref|ZP_05909508.1| deoxyribodipyrimidine photo-lyase [Vibrio parahaemolyticus AQ4037] gi|308109383|gb|EFO46923.1| deoxyribodipyrimidine photo-lyase [Vibrio parahaemolyticus AQ4037] Length = 471 Score = 448 bits (1152), Expect = e-123, Method: Composition-based stats. Identities = 206/477 (43%), Positives = 281/477 (58%), Gaps = 12/477 (2%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 + LVW R DLR D+ AL AA V+A F+ATPEQW++H ++ Q+ I L V Sbjct: 1 MILVWFRRDLRTLDHTALKAALDTGQ-PVVACFVATPEQWQEHHMAPMQADLIARRLQHV 59 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128 + L++ I + FDD + + + + T N YE+NEV D+ + + L Sbjct: 60 HQELTELNIPLLCKEVPRFDDCTKVICDWADKLNATAAMVNINYEVNEVELDRKVSQALD 119 Query: 129 HRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187 +R + +F D +L P ++LN + +KV+TPF++A +Q S P L Sbjct: 120 NRGVEFHAFHDKCVLAPTTVLNKQGEYFKVFTPFKRAWLQKFS-LPTVSKPQRQNELPSE 178 Query: 188 VTPSNIPRFFDYPF-----QAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGT 242 + FD + + + + L LR F +E+ Y +RD PAI GT Sbjct: 179 QLEAVKQDGFDADYTFSYPRESSEAWCASTNDILKQLRTFARERSDGYQMKRDFPAIDGT 238 Query: 243 SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVC 302 SQLSPYL+IG LSPRQC RL E + G +WL+E+IWREFY+HL+ F P + Sbjct: 239 SQLSPYLAIGALSPRQCIARLYAENPQPDL--SEGKATWLSEIIWREFYQHLLVFEPKLV 296 Query: 303 MGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLV 362 G+ FI W +KI+W+ D + WK G TG+PI+DAAMRQLN GWMHNRLRMI ASFL Sbjct: 297 KGRGFIDWEDKIQWSYDEQAFECWKTGTTGYPIVDAAMRQLNQTGWMHNRLRMIVASFLT 356 Query: 363 KDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQG 422 KDL +DWR GEEYFMS+L+DGD A+NNGGWQW+ASTG D PYFRIFNP QG++FD G Sbjct: 357 KDLHIDWRWGEEYFMSKLVDGDFAANNGGWQWSASTGCDGQPYFRIFNPISQGEKFDSDG 416 Query: 423 TFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479 F+RHW+PE+ VP +++H P +W + L Y P+VDHK TL + +AK+ Sbjct: 417 QFVRHWVPEIKRVPNKFVHKPWTWEGFSLLE--YHKPMVDHKVEREITLRLFKSAKE 471 >gi|127512408|ref|YP_001093605.1| deoxyribodipyrimidine photo-lyase [Shewanella loihica PV-4] gi|126637703|gb|ABO23346.1| Deoxyribodipyrimidine photo-lyase type I [Shewanella loihica PV-4] Length = 478 Score = 447 bits (1150), Expect = e-123, Method: Composition-based stats. Identities = 205/480 (42%), Positives = 279/480 (58%), Gaps = 20/480 (4%) Query: 10 HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69 L+WLR D R+ DN AL A + A+FIATP QW+QH ++ ++ I L + Sbjct: 3 ALLWLRRDFRLHDNPALSEAVRLRVKQ--ALFIATPAQWQQHDMAPIKADLIRRHLELMA 60 Query: 70 KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH 129 L++ GI ++F D + L YC V L N + E++E RDK + Sbjct: 61 GELAEYGIELVILSATDFSDQVRVLCDYCRDHGVKLLLANSEPELDEQERDKQVMAA--- 117 Query: 130 RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAI------- 182 + + + + +LPPGS+LN +M+KV+TPF+KA ++ + + +P PA Sbjct: 118 GIDLRLWQNDTILPPGSVLNQQGEMFKVFTPFKKAWLKCVAAKGIECVPTPAKSTPVKSI 177 Query: 183 -------RLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRD 235 +L TP + DYP +P EQ +L F ++K+ Y E+RD Sbjct: 178 GDAQAASQLPQQPTPQSSSINLDYPLVDSGR-WPDSEQVMGQLLPHFWQDKLLNYGERRD 236 Query: 236 IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLM 295 PAI+GTS LSPYL+IG +S R +L + +++ + GAF+WLNELIWR+FY+HL+ Sbjct: 237 FPAIKGTSGLSPYLAIGAISSRWLALQLVQRHPEVIYDTQHGAFTWLNELIWRDFYKHLL 296 Query: 296 AFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRM 355 YP + G F P E + W + QAW +G TG+PI+DAAM+QL GWMHNRLRM Sbjct: 297 FHYPELIKGGSFQPKYESLPWPNNEAHFQAWCEGRTGYPIVDAAMKQLRRTGWMHNRLRM 356 Query: 356 ITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQG 415 I ASFL K LLVDW GE +FM QL+DGD ++NNGGWQWAASTG D+ PYFRIFNP Q Sbjct: 357 IVASFLTKHLLVDWHKGERFFMQQLIDGDFSANNGGWQWAASTGCDAQPYFRIFNPITQS 416 Query: 416 KRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYY 475 ++FDP+G FIR +LPEL VP + IH PH +L + YP PIVDHK A L Y Sbjct: 417 QKFDPRGEFIRKYLPELREVPDKQIHFPHDYLASQGKAEIYPAPIVDHKAARQRALAFYK 476 >gi|328469264|gb|EGF40210.1| deoxyribodipyrimidine photolyase [Vibrio parahaemolyticus 10329] Length = 471 Score = 447 bits (1150), Expect = e-123, Method: Composition-based stats. Identities = 207/477 (43%), Positives = 282/477 (59%), Gaps = 12/477 (2%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 + LVW R DLR D+ AL AA V+A F+ATPEQW++H ++ Q+ I L V Sbjct: 1 MILVWFRRDLRTLDHTALKAALDTGQ-PVVACFVATPEQWQEHHMAPMQADLIARRLEHV 59 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128 + L++ I Y + FDD + + + + T N YE+NEV D+ + + L Sbjct: 60 HQELTELNIPLLYKEVPRFDDCTKVICDWADKLNATAAMVNINYEVNEVELDRKVSQALD 119 Query: 129 HRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187 +R + +F D + P ++LN + +KV+TPF++A +Q S P L Sbjct: 120 NRGVEFHAFHDKCVHAPTTVLNKQGEYFKVFTPFKRAWLQKFS-LPTVSKPQRQNELPSA 178 Query: 188 VTPSNIPRFFDYPF-----QAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGT 242 + FD F + + + L LR F +E+ Y +RD PAI GT Sbjct: 179 QLAAVKQDAFDADFTFSYPRESSKAWCASTNDILKQLRTFARERSDGYQMKRDFPAIDGT 238 Query: 243 SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVC 302 SQLSPYL+IG LSPRQC RL E + G +WL+E+IWREFY+HL+ F P + Sbjct: 239 SQLSPYLAIGALSPRQCIARLYAENPQPDL--SEGKATWLSEIIWREFYQHLLVFEPKLV 296 Query: 303 MGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLV 362 G+ FI W +KI+W+ D + WK G TG+PI+DAAMRQLN GWMHNRLRMI ASFL Sbjct: 297 KGRGFIDWEDKIQWSYDEQAFECWKTGSTGYPIVDAAMRQLNQTGWMHNRLRMIVASFLA 356 Query: 363 KDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQG 422 KDL +DWR GEEYFMS+L+DGD A+NNGGWQW+ASTG D PYFRIFNP QG++FD G Sbjct: 357 KDLHIDWRWGEEYFMSKLVDGDFAANNGGWQWSASTGCDGQPYFRIFNPISQGEKFDSDG 416 Query: 423 TFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479 F+RHW+PE+ +VP +++H P +W + L Y P+VDHK TL + +AK+ Sbjct: 417 QFVRHWVPEIKSVPNKFVHKPWTWEGFSLLE--YHKPMVDHKVEREITLRLFKSAKE 471 >gi|169795130|ref|YP_001712923.1| deoxyribodipyrimidine photolyase (photoreactivation), FAD-binding [Acinetobacter baumannii AYE] gi|169148057|emb|CAM85920.1| deoxyribodipyrimidine photolyase (photoreactivation), FAD-binding [Acinetobacter baumannii AYE] Length = 498 Score = 447 bits (1150), Expect = e-123, Method: Composition-based stats. Identities = 193/477 (40%), Positives = 274/477 (57%), Gaps = 15/477 (3%) Query: 10 HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69 L+W R DLRI D+ AL+ A + + + I +PEQW+QH + + F L +Q Sbjct: 24 QLIWFRQDLRIHDHAALWHASQQGPS--LGLVILSPEQWKQHADAPIKISFYLRQLRTLQ 81 Query: 70 KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL-Q 128 K LS I + + ++ + + + ++ N + +NE++RDK ++ L + Sbjct: 82 KELSALHIPLVIQVIPYWKEIATFISDFSKKYNIENVYANIEIGVNELKRDKTVQDYLNR 141 Query: 129 HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLR-SLPVPAIRLTGP 187 H F D + P SI N + Q Y+V++ F+KA L + L PVP + P Sbjct: 142 HGKELFLFHDRTIFPLRSIRNQSQQPYQVFSAFKKACYTKLDTSGLPQCYPVPNKQNEVP 201 Query: 188 --------VTPSNIPRFFDYPFQAIDP-MFPIGEQNALHILRKFCKEKVYYYVEQRDIPA 238 + I + F ++P+GEQ AL L +F ++ V +Y +RD P Sbjct: 202 LDFLQGKNIDLDEIEKLFCSSLSKEQQDLWPVGEQYALEQLDQFIEQSVCHYKVERDFPH 261 Query: 239 IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFY 298 IQ TS+LSPYL+IG+LS RQC L G +WL+EL+WREFY+H++ + Sbjct: 262 IQATSKLSPYLNIGILSIRQCLQALFRNQHGNFHLVNEGQQTWLDELLWREFYQHILFDF 321 Query: 299 PSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITA 358 P V PF ++KI+WN + L AW+ G TG PI+DA MRQL GWMHNR+RMITA Sbjct: 322 PHVSKHIPFKKDSQKIKWNHNPEHLTAWQTGQTGIPIVDAGMRQLLQTGWMHNRVRMITA 381 Query: 359 SFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRF 418 FL K+LL+DWRIGE++FM L+DGDLA+NNGGWQW ASTG D+VPYFRIFNP Q K+F Sbjct: 382 MFLCKNLLIDWRIGEQWFMQHLIDGDLAANNGGWQWCASTGTDAVPYFRIFNPIAQSKKF 441 Query: 419 DPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYY 475 DP+G +IR W+ EL ++ + IH P+S K+DL LNY PIVD K+ + + Sbjct: 442 DPEGEYIRQWIKELAHLDNKTIHEPYS--SKSDLGLNYSKPIVDLKETRLKAIETFK 496 >gi|160876317|ref|YP_001555633.1| deoxyribodipyrimidine photo-lyase [Shewanella baltica OS195] gi|160861839|gb|ABX50373.1| Deoxyribodipyrimidine photo-lyase [Shewanella baltica OS195] gi|315268506|gb|ADT95359.1| Deoxyribodipyrimidine photo-lyase [Shewanella baltica OS678] Length = 499 Score = 447 bits (1150), Expect = e-123, Method: Composition-based stats. Identities = 200/490 (40%), Positives = 283/490 (57%), Gaps = 14/490 (2%) Query: 1 MKATTAMSVHLVWLRNDLRITDNKALYAAC---HNSDAKVIAVFIATPEQWRQHGISARQ 57 M+ + L+W R DLR+ DN+AL AAC + + A++IATP QW++H ++ Q Sbjct: 13 MRIEVQGNNALMWFRQDLRLADNQALSAACDWARENGVALKAIYIATPTQWQRHDVAPIQ 72 Query: 58 SHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEV 117 FI + + + L+ GI F+ Q F D ++ YC QQ ++++F + EINE Sbjct: 73 LDFIERHINLLAQGLASLGITFELIQLDTFADVPAFISDYCQQQGISRVFAGSEPEINEQ 132 Query: 118 RRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSL 177 +RD+ +Q + ++ LL PG++LN + MYKV+TPF + + + + L Sbjct: 133 QRDQA---CIQAGIPLVLTEEHCLLKPGTVLNLSGDMYKVFTPFSRKWREIAARHAILPL 189 Query: 178 PVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIP 237 PVPA GPV P F+ + ++ GE A IL F ++KV Y + RD P Sbjct: 190 PVPAP--LGPVLTEPKPHLFNNVTKVSSELWAAGEGQAKRILSAFIQQKVQDYKQDRDFP 247 Query: 238 AIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAF 297 AI GTS +SPYL+IGV+SPRQC L +F ++++ S A +WLNEL WREFYRHL+ Sbjct: 248 AIDGTSSISPYLAIGVVSPRQCVAALLHDFPEVIVDDTSPARTWLNELTWREFYRHLLVA 307 Query: 298 YPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMIT 357 +P + F + ++W + AW +G TG+PI+DAAMRQLN GWMHNRLRM+ Sbjct: 308 FPDLSKNYNFNRQADHVQWRNNQQEFAAWCEGRTGYPIVDAAMRQLNQTGWMHNRLRMVV 367 Query: 358 ASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKR 417 ASFL K LL+DWR GE F +L+DGDLA+NNGGWQW+A G D+ PYFRIFNP Q ++ Sbjct: 368 ASFLTKHLLIDWRWGERNFRQKLIDGDLAANNGGWQWSAGCGCDAQPYFRIFNPMSQSEK 427 Query: 418 FDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDL------SLNYPLPIVDHKKACHHTL 471 FDP G+FIR +LPEL + + +H P + + YP IV+H A L Sbjct: 428 FDPDGSFIRKYLPELASWGIKQLHQPSTAQTPSLFDQPLFTKTAYPSAIVEHSAARARAL 487 Query: 472 NQYYAAKKQS 481 KK + Sbjct: 488 TVLGVLKKAA 497 >gi|325273235|ref|ZP_08139517.1| deoxyribodipyrimidine photolyase [Pseudomonas sp. TJI-51] gi|324101641|gb|EGB99205.1| deoxyribodipyrimidine photolyase [Pseudomonas sp. TJI-51] Length = 473 Score = 447 bits (1150), Expect = e-123, Method: Composition-based stats. Identities = 198/477 (41%), Positives = 281/477 (58%), Gaps = 9/477 (1%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 +HL WLR+DLRI DN AL AA +A+++ +P QWR H + + F +L + Sbjct: 1 MHLTWLRSDLRIDDNTALSAATERG--PTVALWLVSPGQWRAHDDADCKVDFWLRNLRDL 58 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128 +++L + I + +D + + + C Q +V + +N +Y INE RRD K L+ Sbjct: 59 RQALEKLNIPLLIRKIDTWDQAPQAVLDVCQQHQVQSVHWNEEYGINEQRRDAATRKLLE 118 Query: 129 HR-VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADL----RSLPVPAIR 183 V S+ D +L PG+IL + ++V++ F+K +++L ++ R A++ Sbjct: 119 KASVQAHSYLDQLLFRPGTILTRSGDYFQVFSQFKKTCLEHLHRSLPALARRVKRQAALK 178 Query: 184 LTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS 243 + P +I F P +A+ +P GE +A L +F E + Y++ RD+PA+ GTS Sbjct: 179 IHSDPIPQDIDGFEKTP-RALREHWPAGEAHAQQRLSQFLDETIDDYLKTRDLPAMPGTS 237 Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCM 303 QLSPYL+ GV+SPRQC + +G +W+NEL+WREFY+H++ YP V Sbjct: 238 QLSPYLAAGVISPRQCLHGALAANKGEFDSGSTGVQTWVNELLWREFYKHILTGYPQVSR 297 Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363 + F TE + W L+AW+QG TGFPIIDAAMRQL GWMHNRLRMI A FL K Sbjct: 298 HRAFRSHTEALPWRDAPGDLEAWEQGRTGFPIIDAAMRQLLHTGWMHNRLRMIVAMFLSK 357 Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423 +LL+DWR GE +FM L+DGDLA+NNGGWQW+ASTG DSVPYFRIFNP Q +RFDP+G Sbjct: 358 NLLIDWRKGERHFMRHLIDGDLAANNGGWQWSASTGTDSVPYFRIFNPVSQSQRFDPEGR 417 Query: 424 FIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQ 480 FIRHWLPEL ++ + IH P D +Y PIVD + L + ++ Sbjct: 418 FIRHWLPELRDIDEKTIHGPMKSTD-LFAGNSYHNPIVDLGSSRQRALEAFKGLPRR 473 >gi|239501100|ref|ZP_04660410.1| deoxyribodipyrimidine photolyase [Acinetobacter baumannii AB900] Length = 480 Score = 447 bits (1149), Expect = e-123, Method: Composition-based stats. Identities = 195/477 (40%), Positives = 275/477 (57%), Gaps = 15/477 (3%) Query: 10 HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69 L+W R DLRI D+ AL+ A + + + I +PEQW+QH + + F L +Q Sbjct: 6 QLIWFRQDLRIHDHAALWHASQQGTS--LGLVILSPEQWKQHADAPIKISFYLRQLRTLQ 63 Query: 70 KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL-Q 128 K L+ I + + ++ + + + ++ N + +NE++RDK ++ L + Sbjct: 64 KELAALHIPLVIQVIPYWKEIANFISDFSKKYNIENVYANIEIGVNELKRDKTVQDYLNR 123 Query: 129 HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLR-SLPVPAIRLTGP 187 H F D + P SI N + Q Y+V++ F+KA L + L PVP + P Sbjct: 124 HGKELFLFHDRTIFPLRSIRNQSQQPYQVFSAFKKACYTKLDTSGLPQCYPVPNKQNEVP 183 Query: 188 --------VTPSNIPRFFDYPFQAIDP-MFPIGEQNALHILRKFCKEKVYYYVEQRDIPA 238 + I + F ++P+GEQ AL L +F +E V +Y +RD P Sbjct: 184 LDFLQGKNIDLDEIEKLFCSSLSKEQQDLWPVGEQYALDQLDQFIEESVCHYKLERDFPH 243 Query: 239 IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFY 298 IQGTS+LSPYL+IG+LS RQC L G +WL+EL+WREFY+H++ + Sbjct: 244 IQGTSKLSPYLNIGILSIRQCLQALFRNQHGNFHLVNEGQQTWLDELLWREFYQHILFDF 303 Query: 299 PSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITA 358 P V PF T+KI+WN + L AW+ G TG PI+DA MRQL GWMHNR+RMITA Sbjct: 304 PHVSKHIPFKKDTQKIKWNHNPEHLTAWQTGQTGIPIVDAGMRQLLQTGWMHNRVRMITA 363 Query: 359 SFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRF 418 FL K+LL+DWRIGE++FM L+DGDLA+NNGGWQW ASTG D+VPYFRIF+P Q K+F Sbjct: 364 MFLCKNLLIDWRIGEQWFMQHLIDGDLAANNGGWQWCASTGTDAVPYFRIFHPIAQSKKF 423 Query: 419 DPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYY 475 DP+G +IR W+ EL ++ + IH P+S K DL LNYP PIVD K+ + + Sbjct: 424 DPEGEYIRQWVKELAHLDNKTIHEPYS--SKTDLGLNYPKPIVDLKETRLKAIKTFK 478 >gi|119773948|ref|YP_926688.1| deoxyribodipyrimidine photo-lyase [Shewanella amazonensis SB2B] gi|119766448|gb|ABL99018.1| Deoxyribodipyrimidine photo-lyase type I [Shewanella amazonensis SB2B] Length = 475 Score = 447 bits (1149), Expect = e-123, Method: Composition-based stats. Identities = 209/478 (43%), Positives = 282/478 (58%), Gaps = 14/478 (2%) Query: 10 HLVWLRNDLRITDNKALYAACHNSDAK---VIAVFIATPEQWRQHGISARQSHFIYASLL 66 LVW R DLR DN+AL AC +++A+ V A+FIA+P QW++H + RQ F+ A+L Sbjct: 3 TLVWFRQDLRTIDNQALTRACEDANARGGKVHALFIASPGQWQRHDMGVRQQRFLLANLN 62 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 + + L+ GI + F + L ++C + ++ +F Q EI+E RRD+ L Sbjct: 63 ALGEELASMGIPLSLLKVDFFYQTAAALKAFCKEHGISSIFAGAQIEIDERRRDQAL--- 119 Query: 127 LQHRVICKSFDDSVLLPPGSILNHA-----LQMYKVYTPFRKALIQNLVQADLRSLPVPA 181 L + D+ +LPPGS++ MY+V+TPF + + L +P PA Sbjct: 120 LDKGFPLQLTDEHCMLPPGSVVTQGQRDQGGAMYRVFTPFARRWREIAASRSLWPIPAPA 179 Query: 182 IRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQG 241 T PV + + D +P+G+ AL L +F + + Y E RD PAI G Sbjct: 180 SVAT-PVVFTPFAFWGDINDDPALDKWPVGQDAALEKLSRFRELGMGRYGENRDFPAIDG 238 Query: 242 TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSV 301 TS LSPYL++GV+SPRQC L E+F D+ + S A WLNEL+WREFYRHL+ +P + Sbjct: 239 TSSLSPYLALGVISPRQCLAALLEDFPDVFVNESSPARPWLNELVWREFYRHLLVAFPGL 298 Query: 302 CMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFL 361 M K F P + I W D +AWK G TG+P++DAAMRQLN GWMHNRLRM+ ASFL Sbjct: 299 SMAKNFNPLGDGIRWRNDETEFEAWKHGRTGYPLVDAAMRQLNQTGWMHNRLRMVVASFL 358 Query: 362 VKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQ 421 K LL+DWR GE YF QL+DG LA+NNGGWQWAA TG D+ PYFRIFNP Q ++FDP+ Sbjct: 359 TKHLLIDWRWGERYFREQLIDGCLAANNGGWQWAAGTGCDAQPYFRIFNPMSQSEKFDPE 418 Query: 422 GTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479 G FIR +LPEL PT+ +H + S YP PIV+H +A L+ KK Sbjct: 419 GRFIRKYLPELAQWPTRSLHQASGPGLFD--SSGYPSPIVEHTQARVRALDVMAVMKK 474 >gi|184159014|ref|YP_001847353.1| deoxyribodipyrimidine photolyase [Acinetobacter baumannii ACICU] gi|332874793|ref|ZP_08442663.1| deoxyribodipyrimidine photo-lyase [Acinetobacter baumannii 6014059] gi|183210608|gb|ACC58006.1| Deoxyribodipyrimidine photolyase [Acinetobacter baumannii ACICU] gi|322508994|gb|ADX04448.1| Deoxyribodipyrimidine photolyase Photoreactivation [Acinetobacter baumannii 1656-2] gi|323518978|gb|ADX93359.1| deoxyribodipyrimidine photolyase [Acinetobacter baumannii TCDC-AB0715] gi|332737054|gb|EGJ68011.1| deoxyribodipyrimidine photo-lyase [Acinetobacter baumannii 6014059] Length = 480 Score = 447 bits (1149), Expect = e-123, Method: Composition-based stats. Identities = 195/477 (40%), Positives = 275/477 (57%), Gaps = 15/477 (3%) Query: 10 HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69 L+W R DLRI D+ AL+ A + + + I +PEQW+QH + + F L +Q Sbjct: 6 QLIWFRQDLRIHDHAALWHASQQGPS--LGLVILSPEQWKQHADAPIKISFYLRQLRTLQ 63 Query: 70 KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL-Q 128 K L+ I + + ++ + + + ++ N + +NE++RDK ++ L + Sbjct: 64 KELAALHIPLVIQVIPYWKEIANFISDFSKKYNIENVYANIEIGVNELKRDKNVQDYLNR 123 Query: 129 HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADL-RSLPVPAIRLTGP 187 H F D + P SI N + Q Y+V++ F+KA L + L + PVP + P Sbjct: 124 HGKELFLFHDRTIFPLRSIRNQSQQPYQVFSAFKKACYTKLDTSGLSQCYPVPNKQNEVP 183 Query: 188 --------VTPSNIPRFFDYPFQAIDP-MFPIGEQNALHILRKFCKEKVYYYVEQRDIPA 238 + I + F ++P+GEQ AL L +F +E V +Y +RD P Sbjct: 184 LDFLQGKNIDLDEIEKLFCSSLSKEQQDLWPVGEQYALEQLDQFIEESVCHYKVERDFPH 243 Query: 239 IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFY 298 IQ TS+LSPYL+IG+LS RQC L G +WL+EL+WREFY+H++ + Sbjct: 244 IQATSKLSPYLNIGILSIRQCLQALFRNQHGNFHLVNEGQQTWLDELLWREFYQHILFDF 303 Query: 299 PSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITA 358 P V PF T+KI+WN + L AW+ G TG PI+DA MRQL GWMHNR+RMITA Sbjct: 304 PHVSKHIPFKKDTQKIKWNHNPEHLTAWQTGQTGIPIVDAGMRQLLQTGWMHNRVRMITA 363 Query: 359 SFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRF 418 FL K+LL+DWRIGE++FM L+DGDLA+NNGGWQW ASTG D+VPYFRIFNP Q K+F Sbjct: 364 MFLCKNLLIDWRIGEQWFMQHLIDGDLAANNGGWQWCASTGTDAVPYFRIFNPIAQSKKF 423 Query: 419 DPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYY 475 DP+G +IR W+ EL ++ + IH P+S K DL LNYP PIVD K+ + + Sbjct: 424 DPEGEYIRQWIKELTHLDNKTIHDPYS--SKTDLGLNYPKPIVDLKETRLKAIETFK 478 >gi|171694686|ref|XP_001912267.1| hypothetical protein [Podospora anserina S mat+] gi|170947585|emb|CAP59746.1| unnamed protein product [Podospora anserina S mat+] Length = 734 Score = 446 bits (1148), Expect = e-123, Method: Composition-based stats. Identities = 176/496 (35%), Positives = 263/496 (53%), Gaps = 21/496 (4%) Query: 2 KATTAMSVHLV-WLRNDLRITDNKALYAACHNSDA---KVIAVFIATPEQWRQHGISARQ 57 +A T ++ +V W + DLR TDN AL+ A + A +IA++I +P+ + H + + Sbjct: 233 RANTPVAGAVVHWFKMDLRTTDNTALFCASQKAQAAGVPLIALYILSPQDFEAHLTAPVR 292 Query: 58 SHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEV 117 F+ +L ++K L+ I + + + + LF N +YE++E+ Sbjct: 293 VDFMLRTLEILKKDLAALDIPLWVETVKKRKEIPSRIVELMGEWGASHLFANMEYEVDEL 352 Query: 118 RRDKLLEKRLQHRVICKSF-DDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQA---- 172 RRD + + L R + D+ ++PPG + + + Y VYTP+ + ++++ + Sbjct: 353 RRDARMARLLAKRGLVMDVLHDTCIVPPGRLTSGSGGQYAVYTPWFRTWVRHVHENLDLL 412 Query: 173 --------DLRSLPVPAIRLTGPVTPS--NIPRFFDYPFQAIDPMFPIGEQNALHILRKF 222 + S L PS + ++P GE A+ L KF Sbjct: 413 ELVESPTKNPESTRQKLAHLFECPIPSAPENKTLSKEDRERFRALWPAGEHEAMKRLSKF 472 Query: 223 CKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLK-EEFVDLLIKPKSGAFSW 281 + + Y + R+IP+ GTS LS + + G LS R + L G +W Sbjct: 473 ADQAIGKYQQNRNIPSNPGTSSLSVHFASGTLSARTAVRTARGRNNTKKLDGGNEGIQTW 532 Query: 282 LNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMR 341 + E+ WR+FY+H++ +P +CM KPF P IEW+ + AWK+G TGFPI+DAAMR Sbjct: 533 IREVAWRDFYKHVLVQWPYICMNKPFKPEYANIEWSYNMEHFDAWKEGRTGFPIVDAAMR 592 Query: 342 QLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGND 401 QL ++GW+HNR RMI ASFL KDLL+DWR+GE+YFM L+DGD ASNNGGW ++AS G D Sbjct: 593 QLRSMGWVHNRCRMIVASFLCKDLLLDWRMGEKYFMEHLVDGDFASNNGGWGFSASVGVD 652 Query: 402 SVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKN-DLSLNYPLPI 460 PYFRIFNP +Q ++FDP G +IR W+PEL V + IH P+ + YP I Sbjct: 653 PQPYFRIFNPLLQSEKFDPDGEYIRKWVPELKEVKGKAIHDPYGRGAAALAIKAGYPKHI 712 Query: 461 VDHKKACHHTLNQYYA 476 VDHK A TL Y Sbjct: 713 VDHKGARERTLAAYKK 728 >gi|323494304|ref|ZP_08099416.1| deoxyribodipyrimidine photolyase [Vibrio brasiliensis LMG 20546] gi|323311467|gb|EGA64619.1| deoxyribodipyrimidine photolyase [Vibrio brasiliensis LMG 20546] Length = 475 Score = 446 bits (1148), Expect = e-123, Method: Composition-based stats. Identities = 211/476 (44%), Positives = 290/476 (60%), Gaps = 13/476 (2%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 + LVWLR DLRI DN+AL +A S+ V+A++IATPE W++HG++ Q+ I L+ + Sbjct: 1 MKLVWLRRDLRIEDNRALCSAIE-SEQPVMALYIATPETWQRHGLAPIQADLIKRRLVTL 59 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128 Q L+ + Y Q + + + + + +++N++YE +E RD L++ L Sbjct: 60 QTDLATINVPLYYAQVDTYQQAAQLVAEIAKSNSLDGVYFNKEYEFDEQNRDARLQELLV 119 Query: 129 HRVIC-KSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187 H I SFDD L PGS+LN +KV+TPF++A + Q + + I Sbjct: 120 HAGIAAHSFDDKCALQPGSVLNKQGHYFKVFTPFKRAYLTRFYQQPISVIRPQPIGEVAQ 179 Query: 188 VTPSNIPRF-----FDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGT 242 + F FDYP ++ +P+ + ++ LR F + Y + RDIP+I+GT Sbjct: 180 LHGEQAQLFSDNSSFDYPTESSAT-YPVDTSSIINQLRDFVAHRSERYSDLRDIPSIEGT 238 Query: 243 SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVC 302 S+LSPYL+IG LS RQC RL ++ L G W++ELIWREFY+HL+ F + Sbjct: 239 SRLSPYLAIGALSVRQCMARLHDQHPKPLP---PGREMWMSELIWREFYQHLIYFESKLS 295 Query: 303 MGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLV 362 GK F+ W +++ W S + AWK+G TG+PI+DAAMRQLN GWMHNRLRM+ ASFL+ Sbjct: 296 KGKCFLEWGDRLSWRNSSADIDAWKKGQTGYPIVDAAMRQLNHTGWMHNRLRMVVASFLI 355 Query: 363 KDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQG 422 KDL VDW +GE YFMS+L+DGD A+NNGGWQW ASTG D PYFRIFNP QG+RFDP G Sbjct: 356 KDLHVDWHVGERYFMSKLVDGDYAANNGGWQWCASTGCDGQPYFRIFNPVSQGERFDPDG 415 Query: 423 TFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478 F+ W+PEL VP ++IH P W +LS YP PIVDHK TL+ Y AK Sbjct: 416 EFVCQWIPELAAVPRKFIHQPWKWCKAKELS--YPPPIVDHKTEREITLSLYKEAK 469 >gi|219682219|ref|YP_002468603.1| deoxyribodipyrimidine photolyase [Buchnera aphidicola str. Tuc7 (Acyrthosiphon pisum)] gi|219621952|gb|ACL30108.1| deoxyribodipyrimidine photolyase [Buchnera aphidicola str. Tuc7 (Acyrthosiphon pisum)] gi|311086037|gb|ADP66119.1| deoxyribodipyrimidine photolyase [Buchnera aphidicola str. LL01 (Acyrthosiphon pisum)] gi|311086610|gb|ADP66691.1| deoxyribodipyrimidine photolyase [Buchnera aphidicola str. TLW03 (Acyrthosiphon pisum)] Length = 483 Score = 446 bits (1147), Expect = e-123, Method: Composition-based stats. Identities = 207/473 (43%), Positives = 296/473 (62%), Gaps = 2/473 (0%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M +L+W RNDLR+ DN AL+ AC N KVI++FI+TP+QW +S ++ F+Y L+ Sbjct: 1 MQKNLIWFRNDLRVHDNTALHQACQNDTDKVISLFISTPKQWHNQSVSKKKISFMYYHLI 60 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 +QK L + I+ YH+ ++F +SIE+L +C + +V LFYN +Y INE RD L++K+ Sbjct: 61 SLQKELLKLNIILYYHESTDFLNSIEYLIFFCKKHKVNNLFYNYEYAINERYRDYLVKKK 120 Query: 127 LQHRV-ICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185 L + + K F D++L I N + YKV+T F+K +IQNL + PVP+ R + Sbjct: 121 LSQKGFLVKGFHDNLLFSNRQIRNQKNETYKVFTFFKKKVIQNLHNNIPQCFPVPSKRKS 180 Query: 186 GPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245 + FP+GE+ A++ L+ FC K Y +RD P + TS L Sbjct: 181 DRDIFLTSISLKNVNLNFNKSFFPVGEKEAINRLKNFCIYKFNDYFLKRDYPFLDATSML 240 Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305 SPYLS G++S R C L + L + SW ++++WREFY HL+ +P + + Sbjct: 241 SPYLSAGIISSRYCLKVLLKTKNSLPLNVLL-TSSWFDQILWREFYYHLLIGFPKISRSE 299 Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365 + W ++I W + AWK+G TGFPIIDA MRQLN +GWMHNRLRMIT+SFLVK+L Sbjct: 300 SLVTWEKEIHWINNIKHFNAWKEGNTGFPIIDAGMRQLNELGWMHNRLRMITSSFLVKNL 359 Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425 L++WR GEEYF+S L+DGDLA NNGGWQW+AS G DSVPY RIFNP Q K FD G FI Sbjct: 360 LINWREGEEYFISNLIDGDLALNNGGWQWSASVGCDSVPYIRIFNPLHQSKTFDESGNFI 419 Query: 426 RHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478 + ++PEL NVP +IH PH W + + ++YP PI+++ ++ +L+ + A+ Sbjct: 420 KKFIPELKNVPNHHIHQPHEWSKQKNFKIDYPNPIINYSESRKTSLSLFKQAR 472 >gi|146282327|ref|YP_001172480.1| deoxyribodipyrimidine photolyase [Pseudomonas stutzeri A1501] gi|145570532|gb|ABP79638.1| deoxyribodipyrimidine photolyase [Pseudomonas stutzeri A1501] Length = 476 Score = 446 bits (1147), Expect = e-123, Method: Composition-based stats. Identities = 196/470 (41%), Positives = 276/470 (58%), Gaps = 7/470 (1%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 L+WLR+DLR +DN AL +A +AV++ TP QW H +A + F +L+++ Sbjct: 2 TQLIWLRSDLRTSDNTALASAMAAG--PTVAVYLITPGQWLAHDDAACKVDFWLRNLVEL 59 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128 L + + + + L C + V +L YN +Y +NE RRD+ + RL+ Sbjct: 60 AGRLQALNVPLLIRDVEEWQAAPDALLKLCQELAVQRLHYNGEYGVNEQRRDQAVAARLR 119 Query: 129 HRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187 I + + D +L PGS+L + +KV+ FR+A + L + + PA + Sbjct: 120 AAGIDVRRYLDQLLFAPGSVLTQSGGYFKVFGQFRRACLARLSMSLPACVAPPAPQHPMT 179 Query: 188 VT---PSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244 V P + R FD P + ++P GE A H L F + ++ Y ++RD+PA GTSQ Sbjct: 180 VASDVPPDEVRGFDRPSDYLRTLWPAGETFAQHRLAAFIGDDLHQYHQRRDLPAEPGTSQ 239 Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304 LS YL+ GV+S RQC + L +GA +W+NEL+WREFY+H++ YP V M Sbjct: 240 LSAYLAAGVISIRQCLHAAVASNRGELDSGSAGATTWINELLWREFYKHILVGYPRVSMH 299 Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364 + F TE + W + + LQAW++G TGFPIIDAAMRQL GWMHNRLRM+TA FL K+ Sbjct: 300 RAFRAETEALPWRRATDELQAWQEGRTGFPIIDAAMRQLRETGWMHNRLRMVTAMFLSKN 359 Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424 LL+DWR GE +FM L+DGDLA+NNGGWQW+ASTG DSVPYFR+FNP Q +RFDP G F Sbjct: 360 LLIDWREGERWFMRHLIDGDLAANNGGWQWSASTGTDSVPYFRLFNPISQSQRFDPDGQF 419 Query: 425 IRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQY 474 +R WLPEL + + IH P S +YP PI+D ++ L+ + Sbjct: 420 LRRWLPELQGLGKREIHNP-STQRSLFGKADYPAPIIDLGESRARALDAF 468 >gi|145605824|ref|XP_370339.2| hypothetical protein MGG_06836 [Magnaporthe oryzae 70-15] gi|145013607|gb|EDJ98248.1| hypothetical protein MGG_06836 [Magnaporthe oryzae 70-15] Length = 595 Score = 444 bits (1143), Expect = e-122, Method: Composition-based stats. Identities = 169/486 (34%), Positives = 249/486 (51%), Gaps = 20/486 (4%) Query: 11 LVWLRNDLRITDNKALYAA---CHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67 + W + DLR+ DN AL A ++ +IA++ +P+ W H + + F SL Sbjct: 104 VHWFKMDLRVADNTALRLASEKAKSAGVPLIALYTVSPKDWEAHLRAPVRVDFTLRSLEV 163 Query: 68 VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127 +++ L++ I + + + S + + L+ N +YE++E+RR+ L + L Sbjct: 164 LRQDLAKLDIPLHVETVDDRRAMKQRVLSLMEEWDASHLYANMEYEVDELRREANLVRLL 223 Query: 128 QHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 + D+ ++PPG + + Y VY+P+ +A +++L P+ Sbjct: 224 AENGKSMEVVHDTCVVPPGKLQTGTGRQYAVYSPWYRAWLKHLSGDPELLEPMEPPHKNP 283 Query: 187 PVTPSNIPRFFD--------------YPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVE 232 FD Q + M+P GE A L F K ++ Y Sbjct: 284 ASAREKFSHLFDGKIPAAPKSKQMNEEEQQRLAAMWPAGEHEARKRLDAFIKRRIDGYAA 343 Query: 233 QRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEF-VDLLIKPKSGAFSWLNELIWREFY 291 +R+ PA GTS +S +L+ G LS R + + L G +W++E+ WR+FY Sbjct: 344 KRNFPADDGTSSISVHLAAGTLSARTAVHLAHKASGTRKLDGGSQGIQTWISEVAWRDFY 403 Query: 292 RHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHN 351 +H++ +P VCM KPF P I W+ D AW +G TGFPI+DAAMRQL GWMHN Sbjct: 404 KHVLVNWPYVCMNKPFKPEYSNIAWSYDMEHFAAWCEGRTGFPIVDAAMRQLRGTGWMHN 463 Query: 352 RLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNP 411 R RMI ASFL KD L+DWR+GE YFM L+DGD ASNNGGW +AAS G D PYFR+FNP Sbjct: 464 RCRMIVASFLAKDFLIDWRMGERYFMENLVDGDFASNNGGWGFAASVGVDPQPYFRVFNP 523 Query: 412 TIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDL-SLNYPLPIVDHKKACHHT 470 +Q ++FDP G +IR W+PEL + + IH P+ + YP P+VDHK Sbjct: 524 LLQSEKFDPNGEYIRKWIPELKGIKGKAIHDPYGRGCGVEAKKKGYPKPLVDHKGCRERA 583 Query: 471 LNQYYA 476 L Y Sbjct: 584 LKAYKE 589 >gi|311087720|gb|ADP67799.1| deoxyribodipyrimidine photolyase [Buchnera aphidicola str. JF98 (Acyrthosiphon pisum)] Length = 483 Score = 444 bits (1143), Expect = e-122, Method: Composition-based stats. Identities = 205/473 (43%), Positives = 295/473 (62%), Gaps = 2/473 (0%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M +L+W RNDLR+ DN AL+ AC N KVI++FI+TP+QW +S ++ F+Y L+ Sbjct: 1 MQKNLIWFRNDLRVHDNTALHQACQNDTDKVISLFISTPKQWHNQSVSKKKISFMYYHLI 60 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 +QK L + I+ YH+ ++F +SIE+L +C + +V LFYN +Y INE RD L++K+ Sbjct: 61 SLQKELLKLNIILYYHESTDFLNSIEYLIFFCKKHKVNNLFYNYEYAINERYRDYLVKKK 120 Query: 127 LQHRV-ICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185 L + + K F D++L I N + YKV+T F+K +IQNL + PVP+ R + Sbjct: 121 LSQKGFLVKGFHDNLLFSNRQIRNQKNETYKVFTFFKKKVIQNLHNNIPQCFPVPSKRKS 180 Query: 186 GPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245 + FP+GE+ A++ L+ FC K Y +RD P + TS L Sbjct: 181 DRDIFLTSISLKNVNLNFNKSFFPVGEKEAINRLKNFCIYKFNDYFLKRDYPFLDATSML 240 Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305 SPYLS G++S R C L + L + W ++++WREFY HL+ +P + + Sbjct: 241 SPYLSAGIISSRYCLKVLLKTKNSLPLNVLL-TSPWFDQILWREFYYHLLIGFPKISRSE 299 Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365 + W ++I W + AWK+G TGFPIIDA MRQLN +GWMHNRLRMIT+SFLVK+L Sbjct: 300 SLVTWEKEIHWINNIKHFNAWKEGNTGFPIIDAGMRQLNELGWMHNRLRMITSSFLVKNL 359 Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425 L++WR GE+YF+S L+DGDLA NNGGWQW+AS G DSVPY RIFNP Q K FD G FI Sbjct: 360 LINWREGEKYFISNLIDGDLALNNGGWQWSASVGCDSVPYIRIFNPLHQSKTFDESGNFI 419 Query: 426 RHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478 + ++PEL NVP +IH PH W + + ++YP PI+++ ++ +L+ + A+ Sbjct: 420 KKFIPELKNVPNHHIHQPHEWSKQKNFKIDYPNPIINYSESRKTSLSLFKQAR 472 >gi|301345220|ref|ZP_07225961.1| deoxyribodipyrimidine photo-lyase [Acinetobacter baumannii AB056] gi|301596996|ref|ZP_07242004.1| deoxyribodipyrimidine photo-lyase [Acinetobacter baumannii AB059] Length = 480 Score = 444 bits (1143), Expect = e-122, Method: Composition-based stats. Identities = 193/477 (40%), Positives = 275/477 (57%), Gaps = 15/477 (3%) Query: 10 HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69 L+W R DLRI D+ AL+ A + + + I +PEQW+QH + + F L +Q Sbjct: 6 QLIWFRQDLRIHDHAALWHASQQGPS--LGLVILSPEQWKQHADAPIKISFYLRQLRTLQ 63 Query: 70 KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL-Q 128 K LS I + + ++ + + + ++ N + +NE++RDK ++ L + Sbjct: 64 KELSALHIPLVIQVIPYWKEIATFISDFSKKYNIENVYANIEIGVNELKRDKTVQDYLNR 123 Query: 129 HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADL-RSLPVPAIRLTGP 187 H F D + P SI N + Q Y+V++ F+KA L + L + PVP + P Sbjct: 124 HGKELFLFHDRTIFPLRSIRNQSQQPYQVFSAFKKACYTKLDTSGLSQCYPVPNKQNEVP 183 Query: 188 --------VTPSNIPRFFDYPFQAIDP-MFPIGEQNALHILRKFCKEKVYYYVEQRDIPA 238 + I + F ++P+GEQ AL L +F ++ V +Y +RD P Sbjct: 184 LDFLQGKNIDLDEIEKLFCSSLSKEQQDLWPVGEQYALEQLDQFIEQSVCHYKVERDFPH 243 Query: 239 IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFY 298 IQ TS+LSPYL+IG+LS RQC L G +WL+EL+WREFY+H++ + Sbjct: 244 IQATSKLSPYLNIGILSIRQCLQALFRNQHGNFHLVNEGQQTWLDELLWREFYQHILFDF 303 Query: 299 PSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITA 358 P V PF ++KI+WN + L AW+ G TG PI+DA MRQL GWMHNR+RMITA Sbjct: 304 PHVSKHIPFKKDSQKIKWNHNPEHLTAWQTGQTGIPIVDAGMRQLLQTGWMHNRVRMITA 363 Query: 359 SFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRF 418 FL K+LL+DWRIGE++FM L+DGDLA+NNGGWQW ASTG D+VPYFRIFNP Q K+F Sbjct: 364 MFLCKNLLIDWRIGEQWFMQHLIDGDLAANNGGWQWCASTGTDAVPYFRIFNPIAQSKKF 423 Query: 419 DPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYY 475 DP+G +IR W+ EL ++ + IH P+S K+DL LNY PIVD K+ + + Sbjct: 424 DPEGEYIRQWIKELAHLDNKTIHEPYS--SKSDLGLNYSKPIVDLKETRLKAIETFK 478 >gi|261251524|ref|ZP_05944098.1| deoxyribodipyrimidine photolyase [Vibrio orientalis CIP 102891] gi|260938397|gb|EEX94385.1| deoxyribodipyrimidine photolyase [Vibrio orientalis CIP 102891] Length = 475 Score = 444 bits (1143), Expect = e-122, Method: Composition-based stats. Identities = 220/478 (46%), Positives = 292/478 (61%), Gaps = 13/478 (2%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 + +VWLR DLR+ DN AL A S V AV+IATP+ W++H ++ Q+ I+ LL + Sbjct: 1 MKIVWLRRDLRVDDNTALVEAV-MSGGSVAAVYIATPKTWQRHNMAPIQADLIFRRLLVL 59 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDK-LLEKRL 127 ++ LS K I Y + + D+ + L Q +++N QYE++E++RD+ L+ + L Sbjct: 60 KQELSAKNIPLYYAEVPTYRDAAQLLADVAQQSDAGSVYFNHQYEVDEIQRDRHLVNQLL 119 Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187 + C FDD +L PGS++N + YKV+TPF++A Q L Q + V + Sbjct: 120 DTNIECVGFDDKCVLSPGSVVNKQREYYKVFTPFKRAYCQRLYQTPISVKRVIEVGSVAE 179 Query: 188 VTPSNIPRF-----FDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGT 242 ++ + F F YP + F + +N + LR F EKV Y QRD P ++GT Sbjct: 180 LSSEKVTHFHPKVEFSYPRVTSERYF-VDTKNIIQKLRDFESEKVDAYALQRDFPEMEGT 238 Query: 243 SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVC 302 SQLSPYL+IG LS RQC RL + G WL+EL+WREFY+HL+ F P + Sbjct: 239 SQLSPYLAIGALSVRQCLIRLL---CNNPPPIAGGREVWLSELVWREFYQHLIYFEPKLS 295 Query: 303 MGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLV 362 G F W + + W + ++AWK G TG+PI+DAAM QLN GWMHNRLRMI ASFLV Sbjct: 296 KGHSFTSWGDNLVWRNNPAEIEAWKLGRTGYPIVDAAMAQLNRTGWMHNRLRMIVASFLV 355 Query: 363 KDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQG 422 KDL VDWRIGEEYFMS+L+DGD A+NNGGWQW ASTG D PYFR+FNPT QG++FD + Sbjct: 356 KDLHVDWRIGEEYFMSKLIDGDYAANNGGWQWCASTGCDGQPYFRVFNPTTQGEKFDSEA 415 Query: 423 TFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQ 480 +FIR WLPEL VP +YIH P W + LS YP PIVDHK TL Y AK+ Sbjct: 416 SFIRSWLPELEEVPDRYIHKPWCWPNAKSLS--YPTPIVDHKAEREITLALYKDAKEN 471 >gi|311087193|gb|ADP67273.1| deoxyribodipyrimidine photolyase [Buchnera aphidicola str. JF99 (Acyrthosiphon pisum)] Length = 483 Score = 444 bits (1143), Expect = e-122, Method: Composition-based stats. Identities = 206/473 (43%), Positives = 295/473 (62%), Gaps = 2/473 (0%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M +L+W RNDLR+ DN AL+ AC N KVI++FI+TP+QW +S ++ F+Y L+ Sbjct: 1 MQKNLIWFRNDLRVHDNTALHQACQNDTDKVISLFISTPKQWHNQSVSKKKISFMYYHLI 60 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 +QK L + I+ YH+ ++F +SIE+L +C + +V LFYN +Y INE RD L++K+ Sbjct: 61 SLQKELLKLNIILYYHESTDFLNSIEYLIFFCKKHKVNNLFYNYEYAINERYRDYLVKKK 120 Query: 127 LQHRV-ICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185 L + + K F D++L I N + YKV+T F+K +IQNL + PVP+ R + Sbjct: 121 LSQKGFLVKGFHDNLLFSNRQIRNQKNETYKVFTFFKKKVIQNLHNNIPQCFPVPSKRKS 180 Query: 186 GPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245 + FP+GE+ A++ L+ FC K Y +RD P + TS L Sbjct: 181 DRDIFLTSISLKNVNLNFNKSFFPVGEKEAINRLKNFCIYKFNDYFLKRDYPFLDATSML 240 Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305 SPYLS G++S R C L + L + W ++++WREFY HL+ +P + + Sbjct: 241 SPYLSAGIISSRYCLKVLLKTKNSLPLNVLL-TSPWFDQILWREFYYHLLIGFPKISRSE 299 Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365 + W ++I W + AWK+G TGFPIIDA MRQLN +GWMHNRLRMIT+SFLVK+L Sbjct: 300 SLVTWEKEIHWINNIKHFNAWKEGNTGFPIIDAGMRQLNELGWMHNRLRMITSSFLVKNL 359 Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425 L++WR GEEYF+S L+DGDLA NNGGWQW+AS G DSVPY RIFNP Q K FD G FI Sbjct: 360 LINWREGEEYFISNLIDGDLALNNGGWQWSASVGCDSVPYIRIFNPLHQSKTFDESGNFI 419 Query: 426 RHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478 + ++PEL NVP +IH PH W + + ++YP PI+++ ++ +L+ + A+ Sbjct: 420 KKFIPELKNVPNHHIHQPHEWSKQKNFKIDYPNPIINYSESRKTSLSLFKQAR 472 >gi|215482677|ref|YP_002324873.1| Deoxyribodipyrimidine photo-lyase [Acinetobacter baumannii AB307-0294] gi|301511002|ref|ZP_07236239.1| deoxyribodipyrimidine photo-lyase [Acinetobacter baumannii AB058] gi|213987651|gb|ACJ57950.1| Deoxyribodipyrimidine photo-lyase [Acinetobacter baumannii AB307-0294] Length = 480 Score = 444 bits (1143), Expect = e-122, Method: Composition-based stats. Identities = 193/477 (40%), Positives = 274/477 (57%), Gaps = 15/477 (3%) Query: 10 HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69 L+W R DLRI D+ AL+ A + + + I +PEQW+QH + + F L +Q Sbjct: 6 QLIWFRQDLRIHDHAALWHASQQGPS--LGLVILSPEQWKQHADAPIKISFYLRQLRTLQ 63 Query: 70 KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL-Q 128 K LS I + + ++ + + + ++ N + +NE++RDK ++ L + Sbjct: 64 KELSALHIPLVIQVIPYWKEIATFISDFSKKYNIENVYANIEIGVNELKRDKTVQDYLNR 123 Query: 129 HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLR-SLPVPAIRLTGP 187 H F D + P SI N + Q Y+V++ F+KA L + L PVP + P Sbjct: 124 HGKELFLFHDRTIFPLRSIRNQSQQPYQVFSAFKKACYTKLDTSGLPQCYPVPNKQNEVP 183 Query: 188 --------VTPSNIPRFFDYPFQAIDP-MFPIGEQNALHILRKFCKEKVYYYVEQRDIPA 238 + I + F ++P+GEQ AL L +F ++ V +Y +RD P Sbjct: 184 LDFLQGKNIDLDEIEKLFCSSLSKEQQDLWPVGEQYALEQLDQFIEQSVCHYKVERDFPH 243 Query: 239 IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFY 298 IQ TS+LSPYL+IG+LS RQC L G +WL+EL+WREFY+H++ + Sbjct: 244 IQATSKLSPYLNIGILSIRQCLQALFRNQHGNFHLVNEGQQTWLDELLWREFYQHILFDF 303 Query: 299 PSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITA 358 P V PF ++KI+WN + L AW+ G TG PI+DA MRQL GWMHNR+RMITA Sbjct: 304 PHVSKHIPFKKDSQKIKWNHNPEHLTAWQTGQTGIPIVDAGMRQLLQTGWMHNRVRMITA 363 Query: 359 SFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRF 418 FL K+LL+DWRIGE++FM L+DGDLA+NNGGWQW ASTG D+VPYFRIFNP Q K+F Sbjct: 364 MFLCKNLLIDWRIGEQWFMQHLIDGDLAANNGGWQWCASTGTDAVPYFRIFNPIAQSKKF 423 Query: 419 DPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYY 475 DP+G +IR W+ EL ++ + IH P+S K+DL LNY PIVD K+ + + Sbjct: 424 DPEGEYIRQWIKELAHLDNKTIHEPYS--SKSDLGLNYSKPIVDLKETRLKAIETFK 478 >gi|229514567|ref|ZP_04404028.1| deoxyribodipyrimidine photolyase [Vibrio cholerae TMA 21] gi|229348547|gb|EEO13505.1| deoxyribodipyrimidine photolyase [Vibrio cholerae TMA 21] Length = 469 Score = 444 bits (1143), Expect = e-122, Method: Composition-based stats. Identities = 210/474 (44%), Positives = 287/474 (60%), Gaps = 10/474 (2%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 + LVW R DLR DN AL AA ++ D V A++IATPEQW QH ++ Q+ I+ L ++ Sbjct: 1 MRLVWFRRDLRSFDNTALTAALNSGD-PVAAMYIATPEQWHQHHLAPIQADLIWRRLAEL 59 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL- 127 Q+ L+ + Y Q ++F + + T++ NR YE++E +RD+ ++ L Sbjct: 60 QQELAALNVPLFYQQVADFQAAAVAVSQLAKTLNATQVLANRDYELDEQQRDQSAQQLLS 119 Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187 + +I +FDD +LPPGS+ + +KV+TPF++A + + A+ Sbjct: 120 EQGIIWSAFDDKCVLPPGSVRTKQGEFFKVFTPFKRAWLTLFQPPVIGKNRPVALWNVPS 179 Query: 188 VTPSNIP---RFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244 + + FDYP P + + LR FC+E+V Y + RD PA +GTS Sbjct: 180 ALAELVWHPEQTFDYPRVDSTP-WAADFETVRAQLRDFCRERVQDYHQARDFPAQEGTSS 238 Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304 LSPYL+IGVLS RQC RL E + + GA WL+ELIWREFY+HL+A P++ Sbjct: 239 LSPYLAIGVLSARQCVARLYHE--SSMGELSEGAQVWLSELIWREFYQHLVAIEPNLSKS 296 Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364 + F+ W ++EW D+ Q W +G TG+PI+DAAMRQLN GWMHNRLRMI ASFL KD Sbjct: 297 RDFVEWGARLEWWNDNEKFQLWCEGKTGYPIVDAAMRQLNQTGWMHNRLRMIVASFLTKD 356 Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424 L +DWR GE YFMS+L+DGD A+NNGGWQW ASTG D PYFRIFNP QG++FDP G F Sbjct: 357 LHIDWRWGERYFMSRLIDGDYAANNGGWQWCASTGCDGQPYFRIFNPVSQGEKFDPNGDF 416 Query: 425 IRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478 IR W+PEL +V + YIH P ++ N + YP +VDHK+ TL Y AK Sbjct: 417 IRRWVPELRSVSSAYIHQPWTYPAVNSVL--YPARLVDHKQEREVTLRLYKTAK 468 >gi|262164645|ref|ZP_06032383.1| deoxyribodipyrimidine photolyase [Vibrio mimicus VM223] gi|262027025|gb|EEY45692.1| deoxyribodipyrimidine photolyase [Vibrio mimicus VM223] Length = 469 Score = 444 bits (1143), Expect = e-122, Method: Composition-based stats. Identities = 212/474 (44%), Positives = 284/474 (59%), Gaps = 10/474 (2%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 + LVW R DLR DN AL AA + + V AV++ATP+QW QH ++ Q+ FI+ L + Sbjct: 1 MKLVWFRRDLRSFDNTALTAAIESGET-VAAVYVATPQQWLQHHLAPIQADFIWRRLSAL 59 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128 Q+ L+ I Y Q ++F ++ ++ ++ NR YE++E +RD E+ L Sbjct: 60 QQELAAINIPLFYQQVADFREAAHAVNQLAKALNANQVLANRDYELDEQQRDLRTEQLLA 119 Query: 129 HRVICKS-FDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187 + I S FDD +LPPGS+ +KV+TPF++A + + A Sbjct: 120 EQGISWSAFDDKCILPPGSVRTKQGDFFKVFTPFKRAWLSLFQPPVIPRNHSAAPWDVPN 179 Query: 188 VTP---SNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244 N + F+YP + +P+ + LR FC+E+V Y + RD PA +GTS Sbjct: 180 EFSHLVWNTDQVFNYP-RVDSSQWPVEFEVIRTQLRDFCRERVQDYHQWRDFPAREGTSV 238 Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304 LSPYL+IG LS RQC RL E + GA WL+ELIWREFY+HL+A P++ Sbjct: 239 LSPYLAIGALSARQCVARLYRE--SAMSALSEGAQVWLSELIWREFYQHLVAIEPNISKS 296 Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364 + F+ W ++EW DS Q W +G TG+PI+DAAMRQLN GWMHNRLRMI ASFL KD Sbjct: 297 RDFLEWGARLEWWNDSEKFQRWCEGNTGYPIVDAAMRQLNQTGWMHNRLRMIVASFLTKD 356 Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424 L +DWR GE YFMS+L+DGD A+NNGGWQW ASTG D PYFRIFNP QG++FDP G F Sbjct: 357 LHIDWRWGERYFMSRLIDGDYAANNGGWQWCASTGCDGQPYFRIFNPVSQGEKFDPNGDF 416 Query: 425 IRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478 IR W+PEL +V + YIH P ++ N + YP P+VDHK+ TL Y AK Sbjct: 417 IRRWVPELRSVSSAYIHQPWTYPAVNSVL--YPAPLVDHKQEREVTLRLYKTAK 468 >gi|153827504|ref|ZP_01980171.1| deoxyribodipyrimidine photolyase, cyclobutane pyrimidine dimer-specific [Vibrio cholerae MZO-2] gi|149738567|gb|EDM52922.1| deoxyribodipyrimidine photolyase, cyclobutane pyrimidine dimer-specific [Vibrio cholerae MZO-2] Length = 469 Score = 444 bits (1142), Expect = e-122, Method: Composition-based stats. Identities = 216/475 (45%), Positives = 291/475 (61%), Gaps = 12/475 (2%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 + LVW R DLR DN AL AA ++ D V A++IATPEQW QH ++ Q+ I+ L ++ Sbjct: 1 MRLVWFRRDLRSFDNTALTAALNSGD-PVAAMYIATPEQWHQHHLAPIQADLIWRRLAEL 59 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128 Q+ L+ + Y Q ++F + + T++ NR YE++E +RD+ ++ L Sbjct: 60 QQELAALNVPLFYQQVADFQAAAVAVSQLAKTLNATQVLANRDYELDEQQRDQSAQQLLS 119 Query: 129 HRVICKS-FDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187 + I S FDD +LPPGS+ + +KV+TPF++A + L Q + PA P Sbjct: 120 EQGITWSAFDDKCVLPPGSVRTKQGEFFKVFTPFKRAWL-TLFQPPVIGKNRPAALWDVP 178 Query: 188 VTPSNI----PRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS 243 T + + + FDYP P + + LR FC+E+V Y + RD PA +GTS Sbjct: 179 STLAELVWHPEQTFDYPRVDSTP-WAADFETVRAQLRDFCRERVQDYHQARDFPAQEGTS 237 Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCM 303 LSPYL+IGVLS RQC RL E + + GA WL+ELIWREFY+HL+A P++ Sbjct: 238 SLSPYLAIGVLSARQCVARLYHE--SSMGELSEGAQVWLSELIWREFYQHLVAIEPNLSK 295 Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363 + F+ W ++EW D+ Q W +G TG+PI+DAAMRQLN GWMHNRLRMI ASFL K Sbjct: 296 SRDFVEWGARLEWWNDNEKFQLWCEGKTGYPIVDAAMRQLNQTGWMHNRLRMIVASFLTK 355 Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423 DL +DWR GE YFMS+L+DGD A+NNGGWQW ASTG D PYFRIFNP QG++FDP G Sbjct: 356 DLHIDWRWGERYFMSRLIDGDYAANNGGWQWCASTGCDGQPYFRIFNPVSQGEKFDPNGD 415 Query: 424 FIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478 FIR W+PEL +V + YIH P ++ N + YP +VDHK+ TL Y AK Sbjct: 416 FIRRWVPELRSVSSAYIHQPWTYPAVNSVL--YPARLVDHKQEREVTLRLYKTAK 468 >gi|153831640|ref|ZP_01984307.1| deoxyribodipyrimidine photo-lyase [Vibrio harveyi HY01] gi|148872150|gb|EDL70967.1| deoxyribodipyrimidine photo-lyase [Vibrio harveyi HY01] Length = 471 Score = 444 bits (1141), Expect = e-122, Method: Composition-based stats. Identities = 205/476 (43%), Positives = 285/476 (59%), Gaps = 10/476 (2%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 + LVW R DLR D+ AL AA V+A F++TPEQW++H ++ Q+ I L+ + Sbjct: 1 MILVWFRRDLRTLDHTALKAALDTGQ-PVVAGFVSTPEQWQEHNMAPMQADLIARRLVHL 59 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL- 127 + L+ I Y + F + E + + L + N YE+NE D+ + L Sbjct: 60 NEELADLNIPLLYKEVPKFSNVTEVIKDWALSLNAKSVMANIHYEVNEQALDREVADVLA 119 Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187 + +V ++F D + P ++LN + +KV+TPF++A + + A Sbjct: 120 KSQVTFEAFHDKCVHAPTTVLNKQGEYFKVFTPFKRAWLLKFQMPMVSKPEPQAEIPQEA 179 Query: 188 VTPSNIPRFF-DYPF---QAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS 243 + P R+ D PF + + + + +H LR+F +E+ Y E+RD+P++ GTS Sbjct: 180 IQPLEADRYHADVPFTYPRESSDQWYVSTSDIVHHLREFARERSDAYQEKRDLPSVDGTS 239 Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCM 303 QLSPYL+IG LSPRQC RL E + G +WL+E+IWREFY+HL+ F P + Sbjct: 240 QLSPYLAIGALSPRQCIARLYAENPHTDL--TDGKATWLSEIIWREFYQHLLVFEPKLVK 297 Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363 GK FIPW +KIEW+ D + WK G TG+PI+DAAMRQLN GWMHNRLRMI ASFL K Sbjct: 298 GKGFIPWEDKIEWSYDEAAFERWKTGTTGYPIVDAAMRQLNATGWMHNRLRMIVASFLTK 357 Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423 DL +DWR GE YFMS+L+DGD A+NNGGWQW+ASTG D PYFRIFNP QG++FD GT Sbjct: 358 DLHIDWRWGEAYFMSKLVDGDFAANNGGWQWSASTGCDGQPYFRIFNPISQGEKFDSDGT 417 Query: 424 FIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479 F+R+W+PE+ VP ++IH P W N L +Y P+VDHK TL + AK+ Sbjct: 418 FVRYWVPEIKQVPNKFIHNPWLWSGFNLL--DYHKPMVDHKVEREITLRLFKNAKE 471 >gi|15600828|ref|NP_232458.1| deoxyribodipyrimidine photolyase [Vibrio cholerae O1 biovar eltor str. N16961] gi|121585968|ref|ZP_01675761.1| deoxyribodipyrimidine photolyase, cyclobutane pyrimidine dimer-specific [Vibrio cholerae 2740-80] gi|153820061|ref|ZP_01972728.1| deoxyribodipyrimidine photolyase, cyclobutane pyrimidine dimer-specific [Vibrio cholerae NCTC 8457] gi|227811685|ref|YP_002811695.1| deoxyribodipyrimidine photolyase [Vibrio cholerae M66-2] gi|229506767|ref|ZP_04396276.1| deoxyribodipyrimidine photolyase [Vibrio cholerae BX 330286] gi|229510438|ref|ZP_04399918.1| deoxyribodipyrimidine photolyase [Vibrio cholerae B33] gi|229517431|ref|ZP_04406876.1| deoxyribodipyrimidine photolyase [Vibrio cholerae RC9] gi|229605241|ref|YP_002875945.1| deoxyribodipyrimidine photolyase [Vibrio cholerae MJ-1236] gi|254850324|ref|ZP_05239674.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae MO10] gi|255746116|ref|ZP_05420063.1| deoxyribodipyrimidine photolyase [Vibrio cholera CIRS 101] gi|262158603|ref|ZP_06029717.1| deoxyribodipyrimidine photolyase [Vibrio cholerae INDRE 91/1] gi|298499922|ref|ZP_07009728.1| deoxyribodipyrimidine photolyase [Vibrio cholerae MAK 757] gi|81858027|sp|Q9KNA8|PHR_VIBCH RecName: Full=Deoxyribodipyrimidine photo-lyase; AltName: Full=DNA photolyase; AltName: Full=Photoreactivating enzyme gi|9657440|gb|AAF95971.1| deoxyribodipyrimidine photolyase [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121549904|gb|EAX59924.1| deoxyribodipyrimidine photolyase, cyclobutane pyrimidine dimer-specific [Vibrio cholerae 2740-80] gi|126509396|gb|EAZ71990.1| deoxyribodipyrimidine photolyase, cyclobutane pyrimidine dimer-specific [Vibrio cholerae NCTC 8457] gi|227010827|gb|ACP07038.1| deoxyribodipyrimidine photolyase [Vibrio cholerae M66-2] gi|229345467|gb|EEO10440.1| deoxyribodipyrimidine photolyase [Vibrio cholerae RC9] gi|229352883|gb|EEO17823.1| deoxyribodipyrimidine photolyase [Vibrio cholerae B33] gi|229357118|gb|EEO22036.1| deoxyribodipyrimidine photolyase [Vibrio cholerae BX 330286] gi|229371727|gb|ACQ62149.1| deoxyribodipyrimidine photolyase [Vibrio cholerae MJ-1236] gi|254846029|gb|EET24443.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae MO10] gi|255735870|gb|EET91268.1| deoxyribodipyrimidine photolyase [Vibrio cholera CIRS 101] gi|262029483|gb|EEY48133.1| deoxyribodipyrimidine photolyase [Vibrio cholerae INDRE 91/1] gi|297541903|gb|EFH77954.1| deoxyribodipyrimidine photolyase [Vibrio cholerae MAK 757] Length = 469 Score = 444 bits (1141), Expect = e-122, Method: Composition-based stats. Identities = 211/474 (44%), Positives = 288/474 (60%), Gaps = 10/474 (2%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 + LVW R DLR DN AL AA ++ D V A++IATPEQW QH ++ Q+ I+ L ++ Sbjct: 1 MRLVWFRRDLRSFDNTALTAALNSGD-PVAAMYIATPEQWHQHHLAPIQADLIWRRLAEL 59 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL- 127 Q+ L+ + Y Q ++F + + T++ NR YE++E +RD+L ++ L Sbjct: 60 QQELAALNVPLFYQQVADFQAAAVAVSQLAKTLNATQVLANRDYELDEQQRDQLAQQLLS 119 Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187 + +I +FDD +LPPGS+ + +KV+TPF++A + + A+ Sbjct: 120 EQGIIWSAFDDKCVLPPGSVRTKQGEFFKVFTPFKRAWLTLFQPPVIGKNRPVALWNVPS 179 Query: 188 VTPSNIP---RFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244 + + FDYP P + + LR FC+E+V Y + RD PA +GTS Sbjct: 180 ALAELVWHPEQAFDYPRIDSTP-WAADFETVRAQLRDFCRERVQDYHQARDFPAREGTSS 238 Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304 LSPYL+IGVLS RQC RL E + + GA WL+ELIWREFY+HL+A P++ Sbjct: 239 LSPYLAIGVLSARQCVARLYHE--SSMGELSEGAQVWLSELIWREFYQHLVAIEPNLSKS 296 Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364 + F+ W ++EW D+ Q W +G TG+PI+DAAMRQLN GWMHNRLRMI ASFL KD Sbjct: 297 RDFVEWGARLEWWNDNEKFQLWCEGKTGYPIVDAAMRQLNQTGWMHNRLRMIVASFLTKD 356 Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424 L +DWR GE YFMS+L+DGD A+NNGGWQW ASTG D PYFRIFNP QG++FDP G F Sbjct: 357 LHIDWRWGERYFMSRLIDGDYAANNGGWQWCASTGCDGQPYFRIFNPVSQGEKFDPNGDF 416 Query: 425 IRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478 IR W+PEL +V + YIH P ++ N + YP +VDHK+ TL Y AK Sbjct: 417 IRRWVPELRSVSSAYIHQPWTYPAVNSVL--YPARLVDHKQEREVTLRLYKTAK 468 >gi|30315019|gb|AAP30741.1|AF500083_1 photolyase [Fusarium oxysporum] Length = 630 Score = 443 bits (1140), Expect = e-122, Method: Composition-based stats. Identities = 171/486 (35%), Positives = 263/486 (54%), Gaps = 20/486 (4%) Query: 11 LVWLRNDLRITDNKALYAA---CHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67 + W + DLR++DN+AL A + +IA++I +P+ + H S + F+ +L Sbjct: 139 VHWFKMDLRLSDNRALALASDKAKEAGVPLIAMYIISPQDYEAHLRSPVRVDFMLRTLEV 198 Query: 68 VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDK-LLEKR 126 ++ L++ I + + Q L+ N +YE++E+RR+ ++ Sbjct: 199 IKHDLAKLDIPLYVETVEKRKRVPDRILELMDQWGAGHLYANMEYEVDELRREASMIRDF 258 Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQA--------DLRSLP 178 ++ + D+ ++PPG + A + Y VYTP+ ++ + ++ + P Sbjct: 259 AENGKAFEVVHDTCVVPPGELHTGAGKQYAVYTPWYRSWVAHIHENLDLLELYEPPEKNP 318 Query: 179 VPAIRLTGPVTPSNIP------RFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVE 232 A ++ + IP R + + ++P GE A L KFC+E + Y + Sbjct: 319 SSARKVFAKLFDVEIPDAPKSKRLDGEEKERLRSLWPCGEHEAKKRLDKFCEEMIGNYQK 378 Query: 233 QRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFV-DLLIKPKSGAFSWLNELIWREFY 291 +R+IPA GTS +S +L+ G +S R C ++ L G +W++E+ WR+FY Sbjct: 379 KRNIPAEAGTSSISVHLASGTISARTCVRTARDRNKTKKLNGGNEGIQTWISEVAWRDFY 438 Query: 292 RHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHN 351 +H++ +P VCM KPF P I W+ D+ AW +G TGFPI+DAAMRQLN +G+MHN Sbjct: 439 KHVLVHWPYVCMNKPFKPEYSNISWSYDNEHFAAWCEGRTGFPIVDAAMRQLNHLGYMHN 498 Query: 352 RLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNP 411 R RMI A FL KDLL+DWR GE YFM L+DGD ASNNGGW ++AS G D PYFRIFNP Sbjct: 499 RCRMIVACFLAKDLLLDWRKGERYFMEHLVDGDFASNNGGWGFSASVGVDPQPYFRIFNP 558 Query: 412 TIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLN-YPLPIVDHKKACHHT 470 +Q ++FDP G +IR W+PEL ++ + IH P++ + N YP PIV HK Sbjct: 559 LLQSEKFDPDGDYIRKWVPELKDLDRKAIHDPYNRGAGSKAKKNGYPAPIVTHKDCRDRA 618 Query: 471 LNQYYA 476 L Y Sbjct: 619 LAAYKE 624 >gi|229522729|ref|ZP_04412145.1| deoxyribodipyrimidine photolyase [Vibrio cholerae TM 11079-80] gi|229340714|gb|EEO05720.1| deoxyribodipyrimidine photolyase [Vibrio cholerae TM 11079-80] Length = 469 Score = 443 bits (1140), Expect = e-122, Method: Composition-based stats. Identities = 211/474 (44%), Positives = 286/474 (60%), Gaps = 10/474 (2%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 + LVW R DLR DN AL AA ++ D V A++IATPEQW QH ++ Q+ ++ L ++ Sbjct: 1 MRLVWFRRDLRSFDNTALTAALNSGD-PVAAMYIATPEQWHQHHLAPIQADLMWRRLAEL 59 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128 Q+ L+ + Y Q ++F + + T++ NR YE++E +RD+ ++ L Sbjct: 60 QQELAALNVPLFYQQVADFQAAAVAVSQLAKTLNATQVLANRDYELDEQQRDQSAQQLLS 119 Query: 129 HRVICKS-FDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187 + I S FDD +LPPGS+ + +KV+TPF++A + + A+ Sbjct: 120 EQGITWSAFDDKCVLPPGSVRTKQGEFFKVFTPFKRAWLTLFQPPVIGKNRPAALWGVPS 179 Query: 188 VTPSNIP---RFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244 + + FDYP P + + LR FC+E+V Y + RD PA +GTS Sbjct: 180 ALAELVWHPEQAFDYPRIDSTP-WAADFETVRAQLRDFCRERVQDYHQARDFPAREGTSS 238 Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304 LSPYL+IGVLS RQC RL E + +P GA WL+ELIWREFY+HL+A P++ Sbjct: 239 LSPYLAIGVLSARQCVARLYHE--SSMGEPSEGAQVWLSELIWREFYQHLVAIEPNLSKS 296 Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364 F+ W ++EW D+ Q W +G TG+PI+DAAMRQLN GWMHNRLRMI ASFL KD Sbjct: 297 LDFVEWGARLEWWNDNEKFQLWCEGKTGYPIVDAAMRQLNQTGWMHNRLRMIVASFLTKD 356 Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424 L +DWR GE YFMS+L+DGD A+NNGGWQW ASTG D PYFRIFNP QG++FDP G F Sbjct: 357 LHIDWRWGERYFMSRLIDGDYAANNGGWQWCASTGCDGQPYFRIFNPVSQGEKFDPNGDF 416 Query: 425 IRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478 IR W+PEL +V + YIH P ++ N + YP +VDHK+ TL Y AK Sbjct: 417 IRRWVPELRSVSSAYIHQPWTYPAVNSVL--YPARLVDHKQEREVTLRLYKTAK 468 >gi|254284783|ref|ZP_04959750.1| deoxyribodipyrimidine photolyase, cyclobutane pyrimidine dimer-specific [Vibrio cholerae AM-19226] gi|150425568|gb|EDN17344.1| deoxyribodipyrimidine photolyase, cyclobutane pyrimidine dimer-specific [Vibrio cholerae AM-19226] Length = 469 Score = 443 bits (1140), Expect = e-122, Method: Composition-based stats. Identities = 211/474 (44%), Positives = 286/474 (60%), Gaps = 10/474 (2%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 + LVW R DLR DN AL AA ++ D V A++IATPEQW QH ++ Q+ I+ L ++ Sbjct: 1 MRLVWFRRDLRSFDNTALTAALNSGD-PVAAMYIATPEQWHQHHLAPIQADLIWRRLAEL 59 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128 Q+ L+ + Y Q ++F + + T++ NR YE++E +RD+ ++ L Sbjct: 60 QQELAALNVPLFYQQVADFQAAAVAVSQLAKTLNATQVLANRDYELDEQQRDQSAQQLLS 119 Query: 129 HRVICKS-FDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187 + I S FDD +LPPGS+ + +KV+TPF++A + + A+ Sbjct: 120 EQGITWSAFDDKCVLPPGSVRTKQGEFFKVFTPFKRAWLTLFQPPVIGKNRPAALWNVPS 179 Query: 188 VTPSNIP---RFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244 + + FDYP P + + LR FC+E+V Y + RD PA +GTS Sbjct: 180 ALAELVWHPEQTFDYPRIDSTP-WAADFETVRAQLRDFCRERVQDYHQARDFPAQEGTSS 238 Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304 LSPYL+IGVLS RQC RL E + + GA WL+ELIWREFY+HL+A P++ Sbjct: 239 LSPYLAIGVLSARQCVARLYHE--SSMGELSEGAQVWLSELIWREFYQHLVAIEPNLSKS 296 Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364 + F+ W ++EW D+ Q W +G TG+PI+DAAMRQLN GWMHNRLRMI ASFL KD Sbjct: 297 RDFVEWGARLEWWNDNEKFQLWCEGKTGYPIVDAAMRQLNQTGWMHNRLRMIVASFLTKD 356 Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424 L +DWR GE YFMS+L+DGD A+NNGGWQW ASTG D PYFRIFNP QG++FDP G F Sbjct: 357 LHIDWRWGERYFMSRLIDGDYAANNGGWQWCASTGCDGQPYFRIFNPVSQGEKFDPNGDF 416 Query: 425 IRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478 IR W+PEL +V + YIH P ++ N + YP +VDHK+ TL Y AK Sbjct: 417 IRRWVPELRSVSSAYIHQPWTYPAVNSVL--YPARLVDHKQEREVTLRLYKTAK 468 >gi|229527954|ref|ZP_04417345.1| deoxyribodipyrimidine photolyase [Vibrio cholerae 12129(1)] gi|229334316|gb|EEN99801.1| deoxyribodipyrimidine photolyase [Vibrio cholerae 12129(1)] Length = 469 Score = 443 bits (1140), Expect = e-122, Method: Composition-based stats. Identities = 211/474 (44%), Positives = 286/474 (60%), Gaps = 10/474 (2%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 + LVW R DLR DN AL AA ++ D V A++IATPEQW QH ++ Q+ I+ L ++ Sbjct: 1 MRLVWFRRDLRSFDNTALTAALNSGD-PVAAMYIATPEQWHQHHLAPIQADLIWRRLAEL 59 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128 Q+ L+ + Y Q ++F + + T++ NR YE++E +RD+ ++ L Sbjct: 60 QQELAALNVPLFYQQVADFQAAAVAVSQLAKTLNATQVLANRDYELDEQQRDQSAQQLLS 119 Query: 129 HRVICKS-FDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187 + I S FDD +LPPGS+ + +KV+TPF++A + + A+ Sbjct: 120 EQGITWSAFDDKCVLPPGSVRTKQGEFFKVFTPFKRAWLTLFQPPVIGKNRPAALWDVPS 179 Query: 188 VTPSNIP---RFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244 + + FDYP P + + LR FC+E+V Y + RD PA +GTS Sbjct: 180 AFAELVWHPEQTFDYPRVDSTP-WAADFETVRAQLRDFCRERVQDYHQARDFPAREGTSS 238 Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304 LSPYL+IGVLS RQC RL E + + GA WL+ELIWREFY+HL+A P++ Sbjct: 239 LSPYLAIGVLSARQCVARLYHE--SSMGELSEGAQVWLSELIWREFYQHLVAIEPNLSKS 296 Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364 + F+ W ++EW D+ Q W +G TG+PI+DAAMRQLN GWMHNRLRMI ASFL KD Sbjct: 297 RDFVEWGARLEWWNDNEKFQLWCEGKTGYPIVDAAMRQLNQTGWMHNRLRMIVASFLTKD 356 Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424 L +DWR GE YFMS+L+DGD A+NNGGWQW ASTG D PYFRIFNP QG++FDP G F Sbjct: 357 LHIDWRWGERYFMSRLIDGDYAANNGGWQWCASTGCDGQPYFRIFNPVSQGEKFDPNGDF 416 Query: 425 IRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478 IR W+PEL +V + YIH P ++ N + YP +VDHK+ TL Y AK Sbjct: 417 IRRWVPELRSVSSAYIHQPWTYPAVNSVL--YPARLVDHKQEREVTLRLYKTAK 468 >gi|153212812|ref|ZP_01948448.1| deoxyribodipyrimidine photolyase, cyclobutane pyrimidine dimer-specific [Vibrio cholerae 1587] gi|124116325|gb|EAY35145.1| deoxyribodipyrimidine photolyase, cyclobutane pyrimidine dimer-specific [Vibrio cholerae 1587] Length = 469 Score = 443 bits (1139), Expect = e-122, Method: Composition-based stats. Identities = 211/474 (44%), Positives = 286/474 (60%), Gaps = 10/474 (2%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 + LVW R DLR DN AL AA ++ D V A++IATPEQW QH ++ Q+ I+ L ++ Sbjct: 1 MRLVWFRRDLRSFDNTALTAALNSGD-PVAAMYIATPEQWHQHHLAPIQADLIWRRLAEL 59 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128 Q+ L+ + Y Q ++F + + T++ NR YE++E +RD+ ++ L Sbjct: 60 QQELAALNVPLFYQQVADFQAAAVAVSQLAKTLNATQVLANRDYELDEQQRDQSAQQLLS 119 Query: 129 HRVICKS-FDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187 + I S FDD +LPPGS+ + +KV+TPF++A + + A+ Sbjct: 120 EQGITWSAFDDKCVLPPGSVRTKQGEFFKVFTPFKRAWLTLFQPPVIGKNRPAALWNVPS 179 Query: 188 VTPSNIP---RFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244 + + FDYP P + + LR FC+E+V Y + RD PA +GTS Sbjct: 180 ALAELVWHPEQTFDYPRIDSTP-WAADFETVRAQLRDFCRERVQDYHQARDFPAREGTSS 238 Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304 LSPYL+IGVLS RQC RL E + + GA WL+ELIWREFY+HL+A P++ Sbjct: 239 LSPYLAIGVLSARQCVARLYHE--SSMGELSEGAQVWLSELIWREFYQHLVAIEPNLSKS 296 Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364 + F+ W ++EW D+ Q W +G TG+PI+DAAMRQLN GWMHNRLRMI ASFL KD Sbjct: 297 RDFVEWGARLEWWNDNEKFQLWCEGKTGYPIVDAAMRQLNQTGWMHNRLRMIVASFLTKD 356 Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424 L +DWR GE YFMS+L+DGD A+NNGGWQW ASTG D PYFRIFNP QG++FDP G F Sbjct: 357 LHIDWRWGERYFMSRLIDGDYAANNGGWQWCASTGCDGQPYFRIFNPVSQGEKFDPNGDF 416 Query: 425 IRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478 IR W+PEL +V + YIH P ++ N + YP +VDHK+ TL Y AK Sbjct: 417 IRRWVPELRSVSSAYIHQPWTYPAVNSVL--YPARLVDHKQEREVTLRLYKTAK 468 >gi|258622171|ref|ZP_05717197.1| deoxyribodipyrimidine photolyase, cyclobutane pyrimidine dimer-specific [Vibrio mimicus VM573] gi|258585495|gb|EEW10218.1| deoxyribodipyrimidine photolyase, cyclobutane pyrimidine dimer-specific [Vibrio mimicus VM573] Length = 469 Score = 442 bits (1138), Expect = e-122, Method: Composition-based stats. Identities = 209/474 (44%), Positives = 284/474 (59%), Gaps = 10/474 (2%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 + LVW R DLR DN AL A + + V AV++ATP+QW+QH ++ Q+ FI+ L + Sbjct: 1 MKLVWFRRDLRSFDNTALTVAIESGET-VAAVYVATPQQWQQHHLAPIQADFIWRRLAAL 59 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128 Q+ L+ + Y Q ++F ++ ++ ++ NR YE++E +RD E+ L Sbjct: 60 QQELAAINVPLFYQQVADFREAANAVNQLAKALNANQVLANRDYELDEQQRDLRTEQLLA 119 Query: 129 HRVICKS-FDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187 + I S FDD +LPPGS+ + +KV+TPF++A + + A Sbjct: 120 EQGILWSAFDDKCILPPGSVRTKQGEFFKVFTPFKRAWLSLFQPPVIPRNHSAAPWDVSN 179 Query: 188 VTPSNIP---RFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244 + + FDY + +P+ + LR FC+E+V Y + RD PA +GTS Sbjct: 180 EFSHLVWHTDQIFDY-TRVDSSQWPVEFEVIRTQLRDFCRERVQDYHQWRDFPAREGTSV 238 Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304 LSPYL+IG LS RQC RL E + GA WL+ELIWREFY+HL+A P++ Sbjct: 239 LSPYLAIGALSARQCVARLYRE--SAMSALSEGAQVWLSELIWREFYQHLVAIEPNISKS 296 Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364 + F+ W ++EW DS Q W +G TG+PI+DAAMRQLN GWMHNRLRMI ASFL KD Sbjct: 297 RDFLEWGARLEWWNDSEKFQRWCEGNTGYPIVDAAMRQLNQTGWMHNRLRMIVASFLTKD 356 Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424 L +DWR GE YFMS+L+DGD A+NNGGWQW ASTG D PYFRIFNP QG++FDP G F Sbjct: 357 LHIDWRWGERYFMSRLIDGDYAANNGGWQWCASTGCDGQPYFRIFNPVSQGEKFDPNGDF 416 Query: 425 IRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478 IR W+PEL +V + YIH P ++ N + YP P+VDHK+ TL Y AK Sbjct: 417 IRRWVPELRSVSSAYIHQPWTYPAVNSVL--YPAPLVDHKQEREVTLRLYKTAK 468 >gi|54296244|ref|YP_122613.1| hypothetical protein lpp0271 [Legionella pneumophila str. Paris] gi|53750029|emb|CAH11419.1| hypothetical protein lpp0271 [Legionella pneumophila str. Paris] Length = 471 Score = 442 bits (1138), Expect = e-122, Method: Composition-based stats. Identities = 169/480 (35%), Positives = 253/480 (52%), Gaps = 19/480 (3%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M++ LVW R DLR+TDN A AC + + VI ++I + + Q+ +++ SL+ Sbjct: 1 MTIALVWFRQDLRLTDNPAFIEACSHHEI-VIPLYIYDD---KCSVLGQAQAWWLHHSLI 56 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 + KSL+Q+G+ + D E + Q V +++NR YE + RDK ++ Sbjct: 57 ALGKSLNQQGLSLVLRKG----DPQEIILELVAQYGVESVYWNRCYEPQVIARDKKIKLA 112 Query: 127 LQHR-VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185 L R + +SF+ ++L P +I N +KV+TP+ K Q L + Sbjct: 113 LGEREIKVQSFNGNLLHEPWTIKNKNGDFFKVFTPYWKQCRQIL--NIPSPFMLTKRPRG 170 Query: 186 GPVTPSNIPRFFDYPF----QAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQG 241 +T ++ ++ P + GE+ A L +F + Y +RD PA Sbjct: 171 IEITSDDLGKWKLLPAINWAARFSEYWTPGEEGAQKKLDEFIVHHLSGYKRERDFPAKNA 230 Query: 242 TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSV 301 TS+LSP+L G +SP R E + +L+EL WREF +L+ +P + Sbjct: 231 TSRLSPHLHFGEISPW-VILRALELAKLEQTCDLASVEHFLSELGWREFSVYLLYHFPKL 289 Query: 302 CMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFL 361 F + W D LL W++G TG+PIIDA MR+L G+MHNR+RMI ASFL Sbjct: 290 DCEN-FRKEFDAFPWQNDEQLLTCWQKGMTGYPIIDAGMRELWATGYMHNRVRMIVASFL 348 Query: 362 VKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQ 421 KDLL+DWR G ++F+ L+D DLA+N+ WQW A G D+ PYFRIFNP +Q ++FDP Sbjct: 349 TKDLLIDWRSGAQWFLDTLVDADLANNSASWQWVAGCGADAAPYFRIFNPVLQSQKFDPD 408 Query: 422 GTFIRHWLPELNNVPTQYIHAPHSWLDKNDL--SLNYPLPIVDHKKACHHTLNQYYAAKK 479 G +IR W+PEL + +Q IH P + D N + YP PI+DH++A L+ Y KK Sbjct: 409 GIYIRQWIPELAQLNSQSIHQPWTDADANSIFLGKKYPKPIIDHQEARTKALSYYQQIKK 468 >gi|50084372|ref|YP_045882.1| deoxyribodipyrimidine photolyase (photoreactivation), FAD-binding [Acinetobacter sp. ADP1] gi|49530348|emb|CAG68060.1| deoxyribodipyrimidine photolyase (photoreactivation), FAD-binding [Acinetobacter sp. ADP1] Length = 477 Score = 442 bits (1138), Expect = e-122, Method: Composition-based stats. Identities = 184/475 (38%), Positives = 268/475 (56%), Gaps = 12/475 (2%) Query: 10 HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69 L+W RNDLR+ D+ AL+ A IA +P QW+QH + + F L Q++ Sbjct: 3 QLIWFRNDLRLNDHAALWHATQAGST--IAFVALSPLQWQQHDDAIIKIDFYMRQLTQLK 60 Query: 70 KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH 129 + L+ I + D + S + + ++ N + INE+ RD +++ L Sbjct: 61 QELNTINIPLIVQIIPLWKDIATEIISISDRYHIQDVYANIETGINEIERDHAVQEALSK 120 Query: 130 -RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188 F D L P GSI N + Y+V+TPF+K + L + P P + P Sbjct: 121 IGKNLILFHDKTLFPLGSIRNKSQAPYQVFTPFKKTCYERLNIDIPKCFPYPHKQKQQPE 180 Query: 189 ---TPSNIPRFFDYPFQAIDPM----FPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQG 241 + IP + ID +PIGE AL++L F ++K+ Y E RD PA G Sbjct: 181 IAKKEAAIPSLKQLGYSQIDQHIQNEWPIGETFALNLLEDFTQDKINRYHESRDYPAQDG 240 Query: 242 TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSV 301 TS +S YL+IG+LS RQC + ++ G WLNEL+WREFY+ L+ +P + Sbjct: 241 TSHISAYLTIGILSIRQCIQAIFQKQHGQFFLNNKGQEIWLNELLWREFYQQLLFDFPKL 300 Query: 302 CMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFL 361 +PF T+ I WN++ +AW QG TG PI+DA MRQL GWMHNR+RMI A FL Sbjct: 301 SRHQPFQDHTKNIPWNENDEHFEAWIQGKTGIPIVDAGMRQLKATGWMHNRVRMICAMFL 360 Query: 362 VKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQ 421 K+LL+DWR GE++FM L+DGDLA+N+GGWQW+ASTG D+ PYFRIFNP Q ++FDP+ Sbjct: 361 SKNLLIDWRKGEKWFMQHLIDGDLAANDGGWQWSASTGTDASPYFRIFNPVTQSQKFDPE 420 Query: 422 GTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYA 476 G F++ W+PEL ++ +++IH P+++ K +L NYP PI+D K + + + Sbjct: 421 GVFLKKWIPELKHLDSKHIHDPYAYQHKTEL--NYPKPIIDLKATRKNAIEVFKK 473 >gi|229526306|ref|ZP_04415710.1| deoxyribodipyrimidine photolyase [Vibrio cholerae bv. albensis VL426] gi|229336464|gb|EEO01482.1| deoxyribodipyrimidine photolyase [Vibrio cholerae bv. albensis VL426] Length = 469 Score = 442 bits (1138), Expect = e-122, Method: Composition-based stats. Identities = 211/474 (44%), Positives = 285/474 (60%), Gaps = 10/474 (2%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 + LVW R DLR DN AL AA ++ D V A++IATPEQW QH ++ Q+ I+ L ++ Sbjct: 1 MRLVWFRRDLRSFDNTALTAALNSGD-PVAAMYIATPEQWHQHHLAPIQADLIWRRLAEL 59 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128 Q+ L+ + Y Q ++F + + T++ NR YE++E +RD+ ++ L Sbjct: 60 QQELAALNVPLFYQQVADFQAAAVAVSQLAKTLNATQVLANRDYELDEQQRDQSAQQFLS 119 Query: 129 HRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187 + I +FDD +LPPGS+ + +KV+TPF++A + + A+ Sbjct: 120 EQGITWFAFDDKCVLPPGSVRTKQGEFFKVFTPFKRAWLTLFQPPVIGKNRPAALWNVPS 179 Query: 188 VTPSNIP---RFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244 + + FDYP P + + LR FC+E+V Y + RD PA +GTS Sbjct: 180 ALAELVWHPEQTFDYPRVDSTP-WAADFETVRAQLRDFCRERVQDYHQARDFPAQEGTSS 238 Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304 LSPYL+IGVLS RQC RL E + + GA WL+ELIWREFY+HL+A P++ Sbjct: 239 LSPYLAIGVLSARQCVARLYHE--SSMGELSEGAQVWLSELIWREFYQHLVAIEPNLSKS 296 Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364 + F+ W ++EW D+ Q W +G TG+PI+DAAMRQLN GWMHNRLRMI ASFL KD Sbjct: 297 RDFVEWGARLEWWNDNEKFQLWCEGKTGYPIVDAAMRQLNQTGWMHNRLRMIVASFLTKD 356 Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424 L +DWR GE YFMS+L+DGD A+NNGGWQW ASTG D PYFRIFNP QG++FDP G F Sbjct: 357 LHIDWRWGERYFMSRLIDGDYAANNGGWQWCASTGCDGQPYFRIFNPVSQGEKFDPNGDF 416 Query: 425 IRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478 IR W+PEL +V + YIH P W S+ YP +VDHK+ TL Y AK Sbjct: 417 IRRWVPELRSVSSAYIHQP--WTYPAINSVLYPARLVDHKQEREVTLRLYKTAK 468 >gi|156976349|ref|YP_001447255.1| deoxyribodipyrimidine photolyase [Vibrio harveyi ATCC BAA-1116] gi|156527943|gb|ABU73028.1| hypothetical protein VIBHAR_05122 [Vibrio harveyi ATCC BAA-1116] Length = 471 Score = 442 bits (1138), Expect = e-122, Method: Composition-based stats. Identities = 206/476 (43%), Positives = 284/476 (59%), Gaps = 10/476 (2%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 + LVW R DLR D+ AL AA V+A F++TPEQW++H ++ Q+ I L+ + Sbjct: 1 MILVWFRRDLRTLDHTALKAALDTGQ-PVVAAFVSTPEQWQEHNMAPMQADLIARRLVHL 59 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL- 127 + L+ I Y + F D + + L + N YE+NE D+ + L Sbjct: 60 DEELADLNIPLLYKEVPKFSDVTGVIKGWALSLNAKSVMANIHYEVNEQALDREIADVLA 119 Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187 + +V ++F D + P ++LN + +KV+TPF++A + + A L Sbjct: 120 KSQVTFEAFHDKCVHAPTTVLNKQGEYFKVFTPFKRAWLLKFQMPMVSKPQPQAEILQEA 179 Query: 188 VTPSNIPRFF-DYPF---QAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS 243 P R+ D PF + + + + +H LR+F +E+ Y E+RD+P++ GTS Sbjct: 180 TQPLEADRYHADVPFTYPRESSEQWFVSTSDIVHHLREFARERSDAYQEKRDLPSVDGTS 239 Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCM 303 QLSPYL+IG LSPRQC RL E + G +WL+E+IWREFY+HL+ F P + Sbjct: 240 QLSPYLAIGALSPRQCIARLYAENPHTDL--TDGKATWLSEIIWREFYQHLLVFEPKLVK 297 Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363 GK FIPW +KIEW+ D + WK G TG+PI+DAAMRQLNT GWMHNRLRMI ASFL K Sbjct: 298 GKGFIPWEDKIEWSYDEAAFERWKTGTTGYPIVDAAMRQLNTTGWMHNRLRMIVASFLTK 357 Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423 DL +DWR GE YFMS+L+DGD A+NNGGWQW+ASTG D PYFRIFNP QG++FD G Sbjct: 358 DLHIDWRWGEAYFMSKLVDGDFAANNGGWQWSASTGCDGQPYFRIFNPISQGEKFDSDGA 417 Query: 424 FIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479 F+R+W+PE+ VP ++IH P W N L +Y P+VDHK TL + AK+ Sbjct: 418 FVRYWVPEIKQVPNKFIHNPWLWSGFNLL--DYHKPMVDHKVEREITLRLFKNAKE 471 >gi|183179740|ref|ZP_02957951.1| deoxyribodipyrimidine photolyase, cyclobutane pyrimidine dimer-specific [Vibrio cholerae MZO-3] gi|183013151|gb|EDT88451.1| deoxyribodipyrimidine photolyase, cyclobutane pyrimidine dimer-specific [Vibrio cholerae MZO-3] Length = 469 Score = 442 bits (1138), Expect = e-122, Method: Composition-based stats. Identities = 207/473 (43%), Positives = 286/473 (60%), Gaps = 8/473 (1%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 + LVW R DLR DN AL AA ++ D V A++IATPEQW QH ++ Q+ I+ L ++ Sbjct: 1 MRLVWFRRDLRSFDNTALTAALNSGD-PVAAMYIATPEQWHQHHLAPIQADLIWRRLAEL 59 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128 Q+ L+ + Y Q ++F + + T++ NR YE++E +RD+ ++ L Sbjct: 60 QQELAALNVPLFYQQVADFQAAAVAVSQLAKTLNATQVLANRDYELDEQQRDQSAQQLLS 119 Query: 129 HRVICKS-FDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADL-RSLPVPAIRLTG 186 + I S FDD +LPPGS+ + +KV+TPF++A + + ++ P + Sbjct: 120 EQGITWSAFDDKCVLPPGSVRTKQGEFFKVFTPFKRAWLTLFQPPVIGKNRPAALWNVPS 179 Query: 187 PVTPSNIPRFFDYPFQAIDPM-FPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245 + + + +D + + LR FC+E+V Y + RD PA +GTS L Sbjct: 180 ALAELVWHPEQTFGYPRVDSTPWAADFETVRAQLRDFCRERVQDYHQARDFPAREGTSSL 239 Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305 SPYL+IGVLS RQC RL E + + GA WL+ELIWREFY+HL+A P++ + Sbjct: 240 SPYLAIGVLSARQCVARLYHE--SSMGELSEGAQVWLSELIWREFYQHLVAIEPNLSKSR 297 Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365 F+ W ++EW D+ Q W +G TG+PI+DAAMRQLN GWMHNRLRMI ASFL KDL Sbjct: 298 DFVEWGARLEWWNDNEKFQLWCEGKTGYPIVDAAMRQLNQTGWMHNRLRMIVASFLTKDL 357 Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425 +DWR GE YFMS+L+DGD A+NNGGWQW ASTG D PYFRIFNP QG++FDP G FI Sbjct: 358 HIDWRWGERYFMSRLIDGDYAANNGGWQWCASTGCDGQPYFRIFNPVSQGEKFDPNGDFI 417 Query: 426 RHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478 R W+PEL +V + YIH P ++ N + YP +VDHK+ TL Y AK Sbjct: 418 RRWVPELRSVSSAYIHQPWTYPAVNSVL--YPARLVDHKQEREVTLRLYKTAK 468 >gi|149187439|ref|ZP_01865737.1| deoxyribodipyrimidine photolyase [Vibrio shilonii AK1] gi|148838975|gb|EDL55914.1| deoxyribodipyrimidine photolyase [Vibrio shilonii AK1] Length = 467 Score = 442 bits (1137), Expect = e-122, Method: Composition-based stats. Identities = 209/472 (44%), Positives = 284/472 (60%), Gaps = 6/472 (1%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 + LV DLR+TDN AL A + + VIA F+ATPEQW+ H +S Q+ I+ L + Sbjct: 1 MRLVLFNRDLRVTDNTALIEAI-DGETPVIAAFVATPEQWKSHSLSPIQADLIWRRLTVL 59 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128 Q L Q + Y + ++ + WL C Q V ++F NR YEINE R + L + Sbjct: 60 QSELKQINVPLIYQEAQDYAAANTWLAEICHQFDVQEVFLNRDYEINEANRIQELSEIAG 119 Query: 129 HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188 ++FDD +L PGS+LN +KV+TPF+KA ++ + + +R V A+ Sbjct: 120 TEWRVRAFDDKCILKPGSVLNQKGDYFKVFTPFKKAWLKIVGEFIVRKPQVSALVTAPAN 179 Query: 189 TPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPY 248 + F YP + + + + LR F +K Y +RD PA+ TS LSPY Sbjct: 180 LLFDSSSSFSYPTRDS-SGWSVDSHEIIQQLRDFSADKANLYHAERDFPALDSTSMLSPY 238 Query: 249 LSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFI 308 L+IG +S RQC RLK + +GA +WL+ELIWREFY+HL+ F P +C ++ Sbjct: 239 LAIGAISARQCVARLK--YDAANTSLSTGAETWLSELIWREFYQHLIYFEPKLCKHHGYL 296 Query: 309 PWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVD 368 W + ++W + W +G TG+PI+DAAMRQLNT GWMHNRLRM+ ASFL KDL +D Sbjct: 297 SWEKHLKWTGKLDHFKQWCEGKTGYPIVDAAMRQLNTKGWMHNRLRMVVASFLTKDLHID 356 Query: 369 WRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHW 428 WR+GE+YFM+QL+DGD A+NNGGWQW ASTG D PYFRIFNP QG++FD G FIR W Sbjct: 357 WRLGEQYFMTQLIDGDFAANNGGWQWCASTGCDGQPYFRIFNPISQGEKFDANGEFIRTW 416 Query: 429 LPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQ 480 +PELN+VP ++IH P W + ++ +YP PIVDHK TL Y AK Q Sbjct: 417 IPELNSVPNKFIHKPWLWNEFENV--DYPQPIVDHKIQRDITLALYKDAKDQ 466 >gi|322696650|gb|EFY88439.1| photolyase [Metarhizium acridum CQMa 102] Length = 587 Score = 442 bits (1137), Expect = e-122, Method: Composition-based stats. Identities = 177/492 (35%), Positives = 257/492 (52%), Gaps = 22/492 (4%) Query: 6 AMSVHLVWLRNDLRITDNKALYAA---CHNSDAKVIAVFIATPEQWRQHGISARQSHFIY 62 A + W + DLR DN+AL A + +I ++I +P+ + H S + FI Sbjct: 91 AKDSVVHWFKTDLRCNDNRALALASEKAKEAAVPLICMYIVSPQDFEAHLTSPVRVDFIL 150 Query: 63 ASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKL 122 +L ++K L+ I + + Q LF N +YE++E+RR+ Sbjct: 151 RTLEILKKDLANLDIPLYIETVERRKQIPDKILELMEQWGSRHLFANMEYEVDELRREAN 210 Query: 123 LEKRLQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLV-QADLRSLPVP 180 L L + D+ ++PPG + + + Y VY+P+ ++ + ++ +L L P Sbjct: 211 LVHDLAENGKSFEVVHDTCVVPPGQLRSGSGNQYAVYSPWYRSWVAHIHADLELLELFDP 270 Query: 181 AIRLTG--------------PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEK 226 + G P PSN + + ++P GE A L KFC+EK Sbjct: 271 PNKNPGTARKQFKDLFECAVPEAPSN-KQLTKEEKRRFHSLWPAGESAAKERLEKFCEEK 329 Query: 227 VYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFV-DLLIKPKSGAFSWLNEL 285 V Y R+IP GTS LS +L+ G +S R C ++ L G W++E+ Sbjct: 330 VGGYSNNRNIPGEDGTSSLSVHLASGTISSRTCVRTARDRNKTKRLDAGNEGIRVWISEV 389 Query: 286 IWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNT 345 WR+FY+H++ +P VCM KP+ P I W+ + AW +G TGFPI+DAAMRQLN Sbjct: 390 AWRDFYKHVLVHWPYVCMNKPYKPEYSNIAWSYNEEHFNAWCEGRTGFPIVDAAMRQLNH 449 Query: 346 IGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPY 405 G+MHNR RMI ASFL KDLL+DWR GE YFM L+DGD ASNNGGW ++AS G D PY Sbjct: 450 NGYMHNRCRMIVASFLSKDLLIDWRKGERYFMEHLIDGDFASNNGGWGFSASVGVDPQPY 509 Query: 406 FRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPH-SWLDKNDLSLNYPLPIVDHK 464 FRIFNP +Q ++FDP+G +IR W+PEL ++ ++ IH P+ YP PIV+HK Sbjct: 510 FRIFNPLLQSEKFDPEGVYIRKWVPELQDLDSKEIHEPYGRGAGGKAKKAGYPKPIVNHK 569 Query: 465 KACHHTLNQYYA 476 L+ Y Sbjct: 570 DCRDRALDAYKE 581 >gi|322707580|gb|EFY99158.1| photolyase [Metarhizium anisopliae ARSEF 23] Length = 587 Score = 442 bits (1137), Expect = e-122, Method: Composition-based stats. Identities = 176/492 (35%), Positives = 259/492 (52%), Gaps = 22/492 (4%) Query: 6 AMSVHLVWLRNDLRITDNKALYAACHNSDA---KVIAVFIATPEQWRQHGISARQSHFIY 62 A + W + DLR DN+AL A + +I ++I +P+ + H S + FI Sbjct: 91 AKDSVIHWFKTDLRCNDNRALALASEKAKETAVPLICMYIVSPQDFEAHLTSPVRVDFIL 150 Query: 63 ASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKL 122 +L +++ L++ I + + Q LF N +YE++E+RR+ Sbjct: 151 RTLEILKRDLAKLDIPLYIETVERRKQIPDRVLELMEQWGSRHLFANMEYEVDELRREAN 210 Query: 123 LEKRLQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLV-QADLRSLPVP 180 + L + D+ ++PPG + + + Y VY+P+ ++ + ++ DL L P Sbjct: 211 MVHDLAENGKSFEVVHDTCVVPPGQLQSGSGNQYAVYSPWYRSWVAHIHADLDLLELFDP 270 Query: 181 AIRLTG--------------PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEK 226 + G P PSN + ++P GE A L KFC+E+ Sbjct: 271 PNKNPGTARKRFKDLFDCAVPEAPSN-KELTKEEKRRFHSLWPAGENAAKERLDKFCEER 329 Query: 227 VYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFV-DLLIKPKSGAFSWLNEL 285 + Y + R+IPA GTS LS +L+ G +S R C ++ L G W++E+ Sbjct: 330 IGGYSDNRNIPAEDGTSSLSVHLASGSISSRTCVRTARDRNKTKKLDGGNEGIRVWISEV 389 Query: 286 IWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNT 345 WR+FY+H++ +P VCM KP+ P I W+ + +AW +G TGFPI+DAAMRQLN Sbjct: 390 AWRDFYKHVLVHWPYVCMNKPYKPEYSNIAWSYNEEHFKAWCEGRTGFPIVDAAMRQLNH 449 Query: 346 IGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPY 405 G+MHNR RMI ASFL KDLL+DWR GE YFM L+DGD ASNNGGW ++AS G D PY Sbjct: 450 NGYMHNRCRMIVASFLSKDLLIDWRKGERYFMEHLIDGDFASNNGGWGFSASVGVDPQPY 509 Query: 406 FRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSL-NYPLPIVDHK 464 FRIFNP +Q ++FDP+G +IR W+PEL ++ + IH P+ YP PIV+HK Sbjct: 510 FRIFNPLLQSEKFDPEGVYIRKWVPELQDLDNKEIHDPYGRGAGAKARKAGYPKPIVNHK 569 Query: 465 KACHHTLNQYYA 476 LN Y Sbjct: 570 DCRDRALNAYKE 581 >gi|254224596|ref|ZP_04918212.1| deoxyribodipyrimidine photolyase, cyclobutane pyrimidine dimer-specific [Vibrio cholerae V51] gi|125622659|gb|EAZ50977.1| deoxyribodipyrimidine photolyase, cyclobutane pyrimidine dimer-specific [Vibrio cholerae V51] Length = 469 Score = 442 bits (1137), Expect = e-122, Method: Composition-based stats. Identities = 210/474 (44%), Positives = 285/474 (60%), Gaps = 10/474 (2%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 + LVW R DLR DN AL A ++ D V A++IATPEQW QH ++ Q+ I+ L ++ Sbjct: 1 MRLVWFRRDLRSFDNTALTTALNSGD-PVAAMYIATPEQWHQHHLAPIQADLIWRRLAEL 59 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128 Q+ L+ + Y Q ++F + + T++ NR YE++E +RD+ ++ L Sbjct: 60 QQELAALNVPLFYQQVADFQAAAVAVSQLAKTLNATQVLANRDYELDEQQRDQSAQQLLS 119 Query: 129 HRVICKS-FDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187 + I S FDD +LPPGS+ + +KV+TPF++A + + A+ Sbjct: 120 EQGITWSAFDDKCVLPPGSVRTKQGEFFKVFTPFKRAWLTLFQPPVIGKNRPAALWDVPS 179 Query: 188 VTPSNIP---RFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244 + + FDYP P + + LR FC+E+V Y + RD PA +GTS Sbjct: 180 ALAELVWHPEQTFDYPRVDSTP-WAADFETVRAQLRDFCRERVQDYHQARDFPAQEGTSS 238 Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304 LSPYL+IGVLS RQC RL E + + GA WL+ELIWREFY+HL+A P++ Sbjct: 239 LSPYLAIGVLSARQCVARLYHE--SSMGELSEGAQVWLSELIWREFYQHLVAIEPNLSKS 296 Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364 + F+ W ++EW D+ Q W +G TG+PI+DAAMRQLN GWMHNRLRMI ASFL KD Sbjct: 297 RDFVEWGARLEWWNDNEKFQLWCEGKTGYPIVDAAMRQLNQTGWMHNRLRMIVASFLTKD 356 Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424 L +DWR GE YFMS+L+DGD A+NNGGWQW ASTG D PYFRIFNP QG++FDP G F Sbjct: 357 LHIDWRWGERYFMSRLIDGDYAANNGGWQWCASTGCDGQPYFRIFNPVSQGEKFDPNGDF 416 Query: 425 IRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478 IR W+PEL +V + YIH P ++ N + YP +VDHK+ TL Y AK Sbjct: 417 IRRWVPELRSVSSAYIHQPWTYPAVNSVL--YPARLVDHKQEREVTLRLYKTAK 468 >gi|254505847|ref|ZP_05117992.1| deoxyribodipyrimidine photo-lyase [Vibrio parahaemolyticus 16] gi|219551070|gb|EED28050.1| deoxyribodipyrimidine photo-lyase [Vibrio parahaemolyticus 16] Length = 465 Score = 442 bits (1137), Expect = e-122, Method: Composition-based stats. Identities = 216/466 (46%), Positives = 296/466 (63%), Gaps = 12/466 (2%) Query: 18 LRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQKSLSQKGI 77 +R DN AL AA + + VIA F+ATP+ WR+H ++ Q+ I L++++ LS+ I Sbjct: 1 MRTIDNTALNAAIESGE-PVIAAFVATPDSWREHKMAPIQADLIKRRLVELKSELSELNI 59 Query: 78 VFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH-RVICKSF 136 Y + ++ S++ + S+ Q VT + N++YE+NEV RD E +L V + Sbjct: 60 PLIYSEAPDYSSSVDVVLSWVKQYGVTNVHVNKEYELNEVSRDDKAESKLSELGVPLHRY 119 Query: 137 DDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVP-AIRLTGPVTPSNIPR 195 DD PGS++N +KV+TP+++A +Q L Q ++ V A+ L + P +I + Sbjct: 120 DDKCHFAPGSVVNKQGHYFKVFTPYKRAYLQKLEQYPVQVQKVKGAVELGRELRPQDILQ 179 Query: 196 F---FDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIG 252 F YP + D ++P+ L +LR F E+ Y RD P+I+GTS+LS YL+IG Sbjct: 180 HDMTFSYPTECSD-VYPVKTTQILELLRAFVNERSDDYQADRDFPSIEGTSRLSLYLAIG 238 Query: 253 VLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTE 312 LS RQC RL + ++ G +WL+ELIWREFY+HL+ F P + G+ F+PW Sbjct: 239 ALSVRQCMARLL---YEQILPLSEGRQTWLSELIWREFYQHLIYFEPKLSRGESFLPWGR 295 Query: 313 KIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIG 372 + W D +QAWK+G TG+PI+DAAMRQLN GWMHNRLRMI ASFL+KDL VDWRIG Sbjct: 296 HLTWQNDEKRIQAWKEGMTGYPIVDAAMRQLNQTGWMHNRLRMIAASFLIKDLQVDWRIG 355 Query: 373 EEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPEL 432 E+YFMS+L+DG+ ++NNGGWQW ASTG D PYFRIFNPT QG+RFDP+G F+RHW+PEL Sbjct: 356 EDYFMSKLIDGEYSANNGGWQWCASTGCDGQPYFRIFNPTTQGERFDPKGDFVRHWVPEL 415 Query: 433 NNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478 NVP +YIH P W + +S YP PIVDHK TL Y AK Sbjct: 416 KNVPDKYIHQPSKWANAKGVS--YPSPIVDHKAQREITLANYKNAK 459 >gi|219681664|ref|YP_002468050.1| deoxyribodipyrimidine photolyase [Buchnera aphidicola str. 5A (Acyrthosiphon pisum)] gi|257471353|ref|ZP_05635352.1| deoxyribodipyrimidine photolyase [Buchnera aphidicola str. LSR1 (Acyrthosiphon pisum)] gi|219624507|gb|ACL30662.1| deoxyribodipyrimidine photolyase [Buchnera aphidicola str. 5A (Acyrthosiphon pisum)] Length = 483 Score = 442 bits (1136), Expect = e-122, Method: Composition-based stats. Identities = 205/473 (43%), Positives = 294/473 (62%), Gaps = 2/473 (0%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M +L+W RNDLR+ DN AL+ AC N KVI++FI+TP+QW +S ++ F+Y L+ Sbjct: 1 MQKNLIWFRNDLRVHDNTALHQACQNDTDKVISLFISTPKQWHNQSVSKKKISFMYYHLI 60 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 +QK L + I+ YH+ ++F +SIE+L +C + +V LFYN +Y INE RD L++K+ Sbjct: 61 SLQKELLKLNIILYYHESTDFLNSIEYLIFFCKKHKVNNLFYNYEYAINERYRDYLVKKK 120 Query: 127 LQHRV-ICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185 L + + K F D++L I N + YKV+T F+K +IQNL + PVP+ R + Sbjct: 121 LSQKGFLVKGFHDNLLFSNRQIRNQKNETYKVFTFFKKKVIQNLHNNIPQCFPVPSKRKS 180 Query: 186 GPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245 + FP+GE+ A++ L+ FC K Y +RD P + TS L Sbjct: 181 DRDIFLTSISLKNVNLNFNKNFFPVGEKEAINRLKNFCIYKFNDYFLKRDYPFLDATSML 240 Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305 SPYLS G++S R C L + L + W ++++WREFY HL+ +P + + Sbjct: 241 SPYLSAGIISSRYCLKVLLKTKNSLPLNVLL-TSPWFDQILWREFYYHLLIGFPKIGRSE 299 Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365 + W ++I W + AWK+G TGFPIIDA MRQLN +GWMHNRLRMIT+SFLVK+L Sbjct: 300 SLVTWEKEIHWINNIKHFNAWKEGNTGFPIIDAGMRQLNELGWMHNRLRMITSSFLVKNL 359 Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425 L++WR GEEYF+S L+DGDLA NNGGWQW+AS G DS PY RIFNP Q K FD G FI Sbjct: 360 LINWREGEEYFISNLIDGDLALNNGGWQWSASVGCDSAPYIRIFNPLHQSKTFDESGNFI 419 Query: 426 RHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478 + ++PEL NVP +IH PH W + + ++YP PI+++ ++ +L+ + A+ Sbjct: 420 KKFIPELKNVPNHHIHQPHEWSKQKNFKIDYPNPIINYSESRKTSLSLFKQAR 472 >gi|54293218|ref|YP_125633.1| hypothetical protein lpl0266 [Legionella pneumophila str. Lens] gi|53753050|emb|CAH14497.1| hypothetical protein lpl0266 [Legionella pneumophila str. Lens] Length = 471 Score = 442 bits (1136), Expect = e-122, Method: Composition-based stats. Identities = 167/480 (34%), Positives = 253/480 (52%), Gaps = 19/480 (3%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M++ LVW R DLR+TDN A AC + + VI ++I + + Q+ +++ SL+ Sbjct: 1 MTIALVWFRQDLRLTDNPAFIEACSHHEI-VIPLYIYDD---KCSVLGQAQAWWLHHSLI 56 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 + KSL+Q+G+ + + E + Q V +++NR YE + RDK ++ Sbjct: 57 ALGKSLNQQGLCLVLRKGAP----QEIILELVAQYGVESVYWNRCYEPQAIARDKKIKLA 112 Query: 127 LQHR-VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185 L R + +SF+ ++L P +I N +KV+TP+ K Q L + Sbjct: 113 LGEREIKVQSFNGNLLHEPWTIKNKNGDFFKVFTPYWKQCRQIL--NIPSPFMLTKRPRG 170 Query: 186 GPVTPSNIPRFFDYPF----QAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQG 241 +T ++ ++ P + GE+ A L +F + Y +RD PA Sbjct: 171 IKITSDDLGKWKLLPAINWAARFSEYWTPGEEGAQKKLDEFIVHHLSGYKRERDFPAKNA 230 Query: 242 TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSV 301 TS+LSP+L G +SP R E + +L+EL WREF +L+ +P + Sbjct: 231 TSRLSPHLHFGEISPW-VILRALELAKLEQTCDLASVEHFLSELGWREFSVYLLYHFPKL 289 Query: 302 CMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFL 361 F + W D LL W++G TG+PIIDA MR+L G+MHNR+RMI ASFL Sbjct: 290 DCEN-FRKEFDAFPWQNDEQLLTCWQKGMTGYPIIDAGMRELWATGYMHNRVRMIVASFL 348 Query: 362 VKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQ 421 KDLL+DWR G ++F+ L+D DLA+N+ WQW A G D+ PYFRIFNP +Q ++FDP Sbjct: 349 TKDLLIDWRSGAQWFLDTLVDADLANNSASWQWVAGCGADAAPYFRIFNPVLQSQKFDPD 408 Query: 422 GTFIRHWLPELNNVPTQYIHAPHSWLDKNDL--SLNYPLPIVDHKKACHHTLNQYYAAKK 479 G +IR W+PEL + +Q IH P + D + + YP PI+DH++A L+ Y KK Sbjct: 409 GVYIRQWIPELAQLNSQSIHQPWTDADASSIFLGKKYPKPIIDHQEARTKALSYYQQIKK 468 >gi|3947746|emb|CAA08916.1| DNA photolyase [Trichoderma atroviride] Length = 629 Score = 442 bits (1136), Expect = e-122, Method: Composition-based stats. Identities = 171/492 (34%), Positives = 262/492 (53%), Gaps = 20/492 (4%) Query: 11 LVWLRNDLRITDNKALYAA---CHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67 + W + DLR +DN++L A + +I V+I +P+ + H S + F+ +L Sbjct: 138 VHWFKMDLRHSDNRSLALASAKAKEAGVPLICVYIISPQDFEAHLTSPVRVDFMLRTLSV 197 Query: 68 VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD-KLLEKR 126 ++ L+ I D + + LF N +YE++E+RR+ +++ + Sbjct: 198 LKDDLAALDIPLHVETVDKRKDIPRRILELMEEWGSNHLFANMEYEVDELRRETRMIRQF 257 Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 ++ + + D+ ++PPG + + + Y VYTP+ +A + ++ + Sbjct: 258 AENNMSFEVVHDTCVVPPGELHSGTGKQYAVYTPWYRAWMAHIHENLDLLEIYDRPEKNP 317 Query: 187 PVTPSNIPRFFDYPF--------------QAIDPMFPIGEQNALHILRKFCKEKVYYYVE 232 T FD P + ++P GE A+ L KFC E V Y + Sbjct: 318 GATRRTFKTLFDCPIPDAPKNKQLNDEEKKRFHGLWPCGEHEAMSRLEKFCDEAVTSYHD 377 Query: 233 QRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFV-DLLIKPKSGAFSWLNELIWREFY 291 +R+IP GTS LS +L+ G +S R C ++ L G W++E+ WR+FY Sbjct: 378 RRNIPGDNGTSCLSVHLASGTISSRTCVRTARDRNKTKRLDGGHQGIHVWISEVAWRDFY 437 Query: 292 RHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHN 351 +H++ +P VCM KPF P IEW+ + +AW +G TGFPI+DAAMRQLN +G+MHN Sbjct: 438 KHVLVNWPYVCMNKPFKPEYANIEWSYNMDHFEAWCEGRTGFPIVDAAMRQLNHMGYMHN 497 Query: 352 RLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNP 411 R RMI ASFL KDLL+DWR+GE+YFM L+DGD ASNNGGW ++AS G D PYFR+FNP Sbjct: 498 RCRMIVASFLSKDLLIDWRMGEKYFMEHLVDGDFASNNGGWGFSASVGVDPQPYFRVFNP 557 Query: 412 TIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSL-NYPLPIVDHKKACHHT 470 +Q ++FDP G +IR W+PEL + + IH P++ YP IVDHK A Sbjct: 558 LLQSEKFDPNGEYIRKWIPELKALSDKEIHDPYNRGAGTKAKKQGYPKQIVDHKGARERA 617 Query: 471 LNQYYAAKKQSL 482 L+ Y ++ + Sbjct: 618 LSAYKDGLERGI 629 >gi|121730224|ref|ZP_01682610.1| deoxyribodipyrimidine photolyase, cyclobutane pyrimidine dimer-specific [Vibrio cholerae V52] gi|147672153|ref|YP_001214921.1| deoxyribodipyrimidine photolyase, cyclobutane pyrimidine dimer-specific [Vibrio cholerae O395] gi|262168985|ref|ZP_06036679.1| deoxyribodipyrimidine photolyase [Vibrio cholerae RC27] gi|121628028|gb|EAX60578.1| deoxyribodipyrimidine photolyase, cyclobutane pyrimidine dimer-specific [Vibrio cholerae V52] gi|146314536|gb|ABQ19076.1| deoxyribodipyrimidine photolyase, cyclobutane pyrimidine dimer-specific [Vibrio cholerae O395] gi|227014689|gb|ACP10898.1| deoxyribodipyrimidine photolyase [Vibrio cholerae O395] gi|262022684|gb|EEY41391.1| deoxyribodipyrimidine photolyase [Vibrio cholerae RC27] Length = 469 Score = 441 bits (1135), Expect = e-122, Method: Composition-based stats. Identities = 210/474 (44%), Positives = 287/474 (60%), Gaps = 10/474 (2%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 + LVW R DLR DN AL AA ++ D V A++IATPEQW QH ++ Q+ I+ L ++ Sbjct: 1 MRLVWFRRDLRSFDNTALTAALNSGD-PVAAMYIATPEQWHQHHLAPIQADLIWRRLAEL 59 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128 Q+ L+ + Y Q ++F + + ++ NR YE++E +RD+ ++ L Sbjct: 60 QQELAALNVPLFYQQVADFQAAAVAVSQLAKTLNAKQVLANRDYELDEQQRDQSAQQLLS 119 Query: 129 HRVICKS-FDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187 + I S FDD +LPPGS+ + +KV+TPF++A + + A+ Sbjct: 120 EQGITWSAFDDKCVLPPGSVRTKQGEFFKVFTPFKRAWLTLFQPPVIGKNRPAALWNVPS 179 Query: 188 VTPSNIP---RFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244 + + FDYP P + + LR+FC+E+V Y + RD PA +GTS Sbjct: 180 ALAELVWHPEQAFDYPRIDSTP-WAADFETVRAQLREFCRERVQDYHQARDFPAQEGTSS 238 Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304 LSPYL+IGVLS RQC RL E + + GA +WL+ELIWREFY+HL+A P++ Sbjct: 239 LSPYLAIGVLSARQCVARLYHE--SSMGELSEGAQAWLSELIWREFYQHLVAIEPNLSKS 296 Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364 + F+ W ++EW D+ Q W +G TG+PI+DAAMRQLN GWMHNRLRMI ASFL KD Sbjct: 297 RDFVEWGARLEWWNDNEKFQLWCEGKTGYPIVDAAMRQLNQTGWMHNRLRMIVASFLTKD 356 Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424 L +DWR GE YFMS+L+DGD A+NNGGWQW ASTG D PYFRIFNP QG++FDP G F Sbjct: 357 LHIDWRWGERYFMSRLIDGDYAANNGGWQWCASTGCDGQPYFRIFNPVSQGEKFDPNGDF 416 Query: 425 IRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478 IR W+PEL +V + YIH P ++ N + YP +VDHK+ TL Y AK Sbjct: 417 IRRWVPELRSVSSAYIHQPWAYPAVNSVL--YPARLVDHKQEREVTLRLYKTAK 468 >gi|260776993|ref|ZP_05885887.1| deoxyribodipyrimidine photolyase [Vibrio coralliilyticus ATCC BAA-450] gi|260606659|gb|EEX32933.1| deoxyribodipyrimidine photolyase [Vibrio coralliilyticus ATCC BAA-450] Length = 471 Score = 441 bits (1135), Expect = e-121, Method: Composition-based stats. Identities = 217/476 (45%), Positives = 282/476 (59%), Gaps = 13/476 (2%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 ++LVWLR DLRI DN AL A + V+ ++ ATPE W +HG++ Q+ IY L + Sbjct: 1 MNLVWLRRDLRIEDNSALVNAVETGE-PVVCIYTATPETWHEHGLAPIQADLIYRRLQGL 59 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128 ++ L I Y + + +S + + ++ N++YE+NE RRD LE L Sbjct: 60 KQDLESLRIPLLYEEVDTYTESAKRVAEIATLLSANRVLVNKEYEVNEQRRDATLEMCLN 119 Query: 129 HRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADL---RSLPVPAIRL 184 I KS DD + PGSI+N +KV+TPF+KA + L + + + RL Sbjct: 120 DTAIQVKSSDDKCIFAPGSIVNKQGSYFKVFTPFKKAYLAELGECSFQVRKPQVACSSRL 179 Query: 185 TGPVTPSNIPRF--FDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGT 242 ++ F YP + D F Q+ + LR F + V Y RD PAI GT Sbjct: 180 PEHLSSLLFADDVTFSYPREPSDQ-FAADTQSIIQTLRDFDSQDVEGYASNRDFPAIAGT 238 Query: 243 SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVC 302 SQLSPYL+IG LS RQC RL L + G W +ELIWREFY+HL+ F + Sbjct: 239 SQLSPYLAIGALSVRQCMARLMFGQAPPLSQ---GREVWQSELIWREFYQHLIYFEAKLS 295 Query: 303 MGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLV 362 G+ F+ W +++ W + ++AWKQG TGFPI+DAAM+QLN GWMHNRLRMI ASFLV Sbjct: 296 KGRSFVDWGDRLVWKNEPQYIEAWKQGETGFPIVDAAMKQLNQTGWMHNRLRMIVASFLV 355 Query: 363 KDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQG 422 KDL VDWR+GE YF+++L+DGD A+NNGGWQW ASTG D PYFRIFNP QG+RFDPQG Sbjct: 356 KDLHVDWRVGERYFINKLIDGDYAANNGGWQWCASTGCDGQPYFRIFNPITQGERFDPQG 415 Query: 423 TFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478 F+R WLPEL VP +Y+H P W SL+YP PIVDHK TL Y AK Sbjct: 416 EFVRQWLPELAQVPDKYLHQPWKW--SGVRSLSYPPPIVDHKVEREVTLRLYKEAK 469 >gi|262173169|ref|ZP_06040846.1| deoxyribodipyrimidine photolyase [Vibrio mimicus MB-451] gi|261890527|gb|EEY36514.1| deoxyribodipyrimidine photolyase [Vibrio mimicus MB-451] Length = 469 Score = 440 bits (1133), Expect = e-121, Method: Composition-based stats. Identities = 211/474 (44%), Positives = 285/474 (60%), Gaps = 10/474 (2%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 + LVW R DLR DN AL AA + + V AV++ATP+QW QH ++ Q+ FI+ L + Sbjct: 1 MKLVWFRRDLRSFDNTALTAAIESGET-VAAVYVATPQQWLQHHLAPIQADFIWRRLAAL 59 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128 Q+ L+ + Y Q ++F ++ ++ ++ NR YE++E +RD E+ L Sbjct: 60 QQELAAINVPLFYQQVADFREAANAVNQLAKALNANQVLANRDYELDEQQRDLRTEQLLA 119 Query: 129 HRVICKS-FDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187 + I S FDD +LPPGS+ + +KV+TPF++A + + A Sbjct: 120 EQGISWSAFDDKCILPPGSLRTKQGEFFKVFTPFKRAWLSLFQPPVIPRNHSAAPWNVPN 179 Query: 188 VTP---SNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244 N + F+YP + +P+ + LR FC+E+V Y + RD PA +GTS Sbjct: 180 EFSHLVWNTDQMFNYP-RVDSSQWPVEFEVIRTQLRDFCRERVQDYHQWRDFPAREGTSI 238 Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304 LSPYL+IG LS RQC RL E + GA WL+ELIWREFY+HL+A P++ Sbjct: 239 LSPYLAIGALSARQCVARLYRESE--MSALSEGAQVWLSELIWREFYQHLVAIEPNISKS 296 Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364 + F+ W ++EW DS Q W +G TG+PI+DAAMRQLN GWMHNRLRMI ASFL KD Sbjct: 297 RDFLEWGARLEWWNDSEKFQRWCEGNTGYPIVDAAMRQLNQTGWMHNRLRMIVASFLTKD 356 Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424 L +DWR GE YFMS+L+DGD A+NNGGWQW ASTG D PYFRIFNP QG++FDP G F Sbjct: 357 LHIDWRWGERYFMSRLIDGDYAANNGGWQWCASTGCDGQPYFRIFNPVSQGEKFDPNGDF 416 Query: 425 IRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478 IR W+PEL +V + YIH P ++ N + YP P+VDHK+ TL Y AK Sbjct: 417 IRRWVPELRSVSSAYIHQPWTYPAVNSVL--YPPPLVDHKQEREVTLRLYKTAK 468 >gi|269962802|ref|ZP_06177143.1| conserved hypothetical protein [Vibrio harveyi 1DA3] gi|269832492|gb|EEZ86610.1| conserved hypothetical protein [Vibrio harveyi 1DA3] Length = 471 Score = 440 bits (1133), Expect = e-121, Method: Composition-based stats. Identities = 211/477 (44%), Positives = 288/477 (60%), Gaps = 12/477 (2%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 + LVW R DLR D+ AL AA +S V+A F+ATPEQW++H ++ Q+ I L + Sbjct: 1 MILVWFRRDLRTLDHTALKAAL-DSGQPVVAGFVATPEQWQEHHMAPMQADLIARRLTHL 59 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128 ++ L++ + Y + F D E + + L V + N YE+NE D+ + + L Sbjct: 60 EEELTELNVPLLYKEVPKFSDVTEVIKGWALSLNVESVMANIHYEVNEQALDREVSEVLA 119 Query: 129 H-RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187 + V ++F D + P ++LN + +KV+TPF++A + Q + S P P L+ Sbjct: 120 NSEVTFEAFHDKCVHAPTTVLNKQGEYFKVFTPFKRAWLLKF-QMPMVSKPQPQAELSKE 178 Query: 188 V--TPSNIPRFFDYPF---QAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGT 242 V D PF + + + + LR+F +E+ Y +RD+PA+ GT Sbjct: 179 VLQAVEADRYHADVPFSYPRESSERWHASTTDIVQQLREFARERSDAYQAERDLPAVDGT 238 Query: 243 SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVC 302 SQLSPYL+IG LSPRQC RL E L G +WL+E+IWREFY+HL+ F P + Sbjct: 239 SQLSPYLAIGALSPRQCIARLYAENP--LPDLTEGKATWLSEIIWREFYQHLLVFEPKLV 296 Query: 303 MGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLV 362 GK FIPW EKI+W+ D + WK G TG+PI+DAAMRQLN GWMHNRLRM+ ASFL Sbjct: 297 RGKGFIPWEEKIQWSYDEQAFERWKTGTTGYPIVDAAMRQLNMTGWMHNRLRMVVASFLT 356 Query: 363 KDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQG 422 KDL +DWR GE YFMS+L+DGD A+NNGGWQW+ASTG D PYFRIFNP QG++FD G Sbjct: 357 KDLHIDWRWGEAYFMSKLVDGDFAANNGGWQWSASTGCDGQPYFRIFNPISQGEKFDSDG 416 Query: 423 TFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479 TF+RHW+PE+ VP ++IH P W N L +Y P+VDHK TL + AK+ Sbjct: 417 TFVRHWVPEIKEVPNKFIHNPWLWSGFNLL--DYHKPMVDHKVEREITLRLFKNAKE 471 >gi|15616910|ref|NP_240123.1| deoxyribodipyrimidine photolyase [Buchnera aphidicola str. APS (Acyrthosiphon pisum)] gi|11133758|sp|P57386|PHR_BUCAI RecName: Full=Deoxyribodipyrimidine photo-lyase; AltName: Full=DNA photolyase; AltName: Full=Photoreactivating enzyme gi|25291445|pir||A84965 deoxyribodipyrimidine photo-lyase (EC 4.1.99.3) [imported] - Buchnera sp. (strain APS) gi|10038974|dbj|BAB13009.1| deoxyribodipyrimidine photolyase [Buchnera aphidicola str. APS (Acyrthosiphon pisum)] Length = 483 Score = 440 bits (1133), Expect = e-121, Method: Composition-based stats. Identities = 205/473 (43%), Positives = 295/473 (62%), Gaps = 2/473 (0%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M +L+W RNDLR+ DN AL+ AC N KVI++FI+TP+QW +S ++ F+Y L+ Sbjct: 1 MQKNLIWFRNDLRVYDNTALHQACQNDTDKVISLFISTPKQWHNQSVSKKKISFMYYHLI 60 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 +QK L + I+ YH+ ++F +SIE+L +C + +V LFYN +Y INE RD L++K+ Sbjct: 61 SLQKELLKLNIILYYHESTDFLNSIEYLIFFCKKHKVNNLFYNYEYAINERYRDYLVKKK 120 Query: 127 LQHRV-ICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185 L + + K F D++L I N + YKV+T F+K +IQNL + PVP+ R + Sbjct: 121 LSQKGFLVKGFHDNLLFSNRQIRNQKNETYKVFTFFKKKVIQNLHNNIPQCFPVPSKRKS 180 Query: 186 GPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245 + FP+GE+ A++ L+ FC K Y +RD P + TS L Sbjct: 181 DRDIFLTSISLKNVNLNFNKNFFPVGEKEAINRLKNFCIYKFNDYFLKRDYPFLDATSML 240 Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305 SPYLS G++S R C L + L + W ++++WREFY HL+ +P + + Sbjct: 241 SPYLSAGIISSRYCLKVLLKTKNSLPLNVLL-TSPWFDQILWREFYYHLLIGFPKISRSE 299 Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365 + W ++I W + AWK+G TGFPIIDA MRQLN +GWMHNRLRMIT+SFLVK+L Sbjct: 300 SLVTWEKEIHWINNIKHFNAWKEGNTGFPIIDAGMRQLNELGWMHNRLRMITSSFLVKNL 359 Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425 L++WR GEE+F+S L+DGDLA NNGGWQW+AS G DSVPY RIFNP Q K FD G FI Sbjct: 360 LINWREGEEHFISNLIDGDLALNNGGWQWSASVGCDSVPYIRIFNPLHQSKTFDESGNFI 419 Query: 426 RHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478 + ++PEL NVP +IH PH W + + ++YP PI+++ ++ +L+ + A+ Sbjct: 420 KKFIPELKNVPNHHIHQPHEWSKQKNFKIDYPNPIINYSESRKTSLSLFKQAR 472 >gi|330811712|ref|YP_004356174.1| Deoxyribodipyrimidine photo-lyase [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327379820|gb|AEA71170.1| Deoxyribodipyrimidine photo-lyase [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 483 Score = 440 bits (1133), Expect = e-121, Method: Composition-based stats. Identities = 187/481 (38%), Positives = 274/481 (56%), Gaps = 9/481 (1%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 + L+WLR+DLR+ DN A + +AV++ +PEQWR H + + F +L + Sbjct: 1 MQLIWLRSDLRLHDNT--ALAAAAAQGPCVAVYLTSPEQWRAHDDAPCKIDFWLRNLGAL 58 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL- 127 +L++ I +++ + + L C + V + N +Y +NE RRD + + L Sbjct: 59 SATLAELNIPLLIRAAAHWHQAPQVLLKLCRELNVGAVHVNEEYGLNETRRDAEVARVLN 118 Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187 V S D +L PGS+L ++V++ FRK L + + PA + Sbjct: 119 DQGVEFHSHLDQLLFKPGSVLTKTGNYFQVFSQFRKVCYSRLHFSLPSLVATPARQALTG 178 Query: 188 VTPSNIPRFFD---YPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244 + +P D P +A+ ++P GE A L F + + Y +RD PA GTSQ Sbjct: 179 IARDPVPTQVDGFAPPSEALRALWPAGETEARRRLDTFVDQHIDDYQGERDYPARPGTSQ 238 Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304 LS YL GV+SPRQC + + +GA +W+NEL+WREFY+H++ YP V Sbjct: 239 LSAYLVAGVVSPRQCLHAALQANQGEFESGSAGAVTWINELLWREFYKHILVGYPRVSRH 298 Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364 + F P TE + W K L+AWKQ TG PIIDAAMRQL GWMHNRLRM+ A FL K+ Sbjct: 299 RAFRPETEALAWRKAPAELEAWKQARTGLPIIDAAMRQLLETGWMHNRLRMVVAMFLTKN 358 Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424 LL+DWR GE +FM L+DGDLA+NNGGWQW+ASTG DS P+FRIFNP Q ++FD +G F Sbjct: 359 LLIDWREGERFFMQHLIDGDLAANNGGWQWSASTGTDSAPWFRIFNPLSQSEKFDREGLF 418 Query: 425 IRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYA--AKKQSL 482 I+ WLPELN++ Q +H+P++ +++YP PIVD +++ L + A++ + Sbjct: 419 IKRWLPELNDLDKQQVHSPNTQGGLFG-AVDYPAPIVDLRQSRARALAAFRNLPARQDAT 477 Query: 483 L 483 + Sbjct: 478 V 478 >gi|332853990|ref|ZP_08435106.1| deoxyribodipyrimidine photo-lyase [Acinetobacter baumannii 6013150] gi|332869730|ref|ZP_08438918.1| deoxyribodipyrimidine photo-lyase [Acinetobacter baumannii 6013113] gi|332728272|gb|EGJ59654.1| deoxyribodipyrimidine photo-lyase [Acinetobacter baumannii 6013150] gi|332732632|gb|EGJ63865.1| deoxyribodipyrimidine photo-lyase [Acinetobacter baumannii 6013113] Length = 480 Score = 440 bits (1132), Expect = e-121, Method: Composition-based stats. Identities = 192/477 (40%), Positives = 273/477 (57%), Gaps = 15/477 (3%) Query: 10 HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69 L+W R DLRI D+ AL+ A + + + I +PEQW+QH + + F L +Q Sbjct: 6 QLIWFRQDLRIHDHAALWHASQQGPS--LGLVILSPEQWKQHADAPIKISFYLRQLRTLQ 63 Query: 70 KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL-Q 128 K LS I + + ++ + + + ++ N + +NE++RDK ++ L + Sbjct: 64 KELSALHIPLVIQVIPYWKEIATFISDFSKKYNIENVYANIEIGVNELKRDKTVQDYLNR 123 Query: 129 HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLR-SLPVPAIRLTGP 187 H F D + P SI N + Q Y+V++ F+KA L + L PVP + P Sbjct: 124 HGKELFLFHDRTIFPLRSIRNQSQQPYQVFSAFKKACYTKLDTSGLPQCYPVPNKQNEVP 183 Query: 188 --------VTPSNIPRFFDYPFQAIDP-MFPIGEQNALHILRKFCKEKVYYYVEQRDIPA 238 + I + F ++P+GEQ AL L +F ++ V +Y +RD P Sbjct: 184 LDFLQGKNIDLDEIEKLFCSSLSKEQQDLWPVGEQYALEQLDQFIEQSVCHYKVERDFPH 243 Query: 239 IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFY 298 IQ TS+LSPYL+IG+LS RQC L G +WL+EL+WREFY+H++ + Sbjct: 244 IQATSKLSPYLNIGILSIRQCLQALFRNQHGNFHLVNEGQQTWLDELLWREFYQHILFDF 303 Query: 299 PSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITA 358 P V PF ++KI+WN + L AW+ G TG PI+DA MRQL GWMHNR+RMITA Sbjct: 304 PHVSKHIPFKKDSQKIKWNHNPEHLTAWQTGQTGIPIVDAGMRQLLQTGWMHNRVRMITA 363 Query: 359 SFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRF 418 FL K+LL+DWRIGE++FM L+DGDLA+NNGGWQW ASTG D+VPYFRIFNP Q K+F Sbjct: 364 MFLCKNLLIDWRIGEQWFMQHLIDGDLAANNGGWQWCASTGTDAVPYFRIFNPIAQSKKF 423 Query: 419 DPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYY 475 D +G +IR W+ EL ++ + IH P+S K+DL LNY PIVD K+ + + Sbjct: 424 DLEGEYIRQWIKELAHLDNKTIHEPYS--SKSDLGLNYSKPIVDLKETRLKAIETFK 478 >gi|327485291|gb|AEA79697.1| Deoxyribodipyrimidine photolyase [Vibrio cholerae LMA3894-4] Length = 469 Score = 440 bits (1132), Expect = e-121, Method: Composition-based stats. Identities = 210/474 (44%), Positives = 285/474 (60%), Gaps = 10/474 (2%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 + LVW R DLR DN AL AA ++ D V A++IATPEQW QH ++ Q+ I+ L ++ Sbjct: 1 MRLVWFRRDLRSFDNTALTAALNSGD-PVAAMYIATPEQWHQHHLAPIQADLIWRRLAEL 59 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128 Q+ L+ + Y Q ++F + + ++ NR YE++E +RD+ ++ L Sbjct: 60 QQELAALNVPLFYQQVADFQAAAVAVSQLAKTLNAIQVLANRDYELDEQQRDQSAQQLLS 119 Query: 129 HRVICKS-FDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187 + I S FDD +LPPGS+ + +KV+TPF++A + + A+ Sbjct: 120 EQGITWSAFDDKCVLPPGSVRTKQGEFFKVFTPFKRAWLTLFQPPVIGKNRPAALWDVPS 179 Query: 188 VTPSNIP---RFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244 + + FDYP P + + LR FC+E+V Y + RD PA +GTS Sbjct: 180 ALAELVWHPEQTFDYPRVDSTP-WAADFETVRAQLRGFCRERVQDYHQARDFPAREGTSS 238 Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304 LSPYL+IGVLS RQC RL E + + GA WL+ELIWREFY+HL+A P++ Sbjct: 239 LSPYLAIGVLSARQCVARLYHE--SSMGELSEGAQVWLSELIWREFYQHLVAIEPNLSKS 296 Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364 + F+ W ++EW D+ Q W +G TG+PI+DAAMRQLN GWMHNRLRMI ASFL KD Sbjct: 297 RDFVEWGARLEWWNDNEKFQLWCEGKTGYPIVDAAMRQLNQTGWMHNRLRMIVASFLTKD 356 Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424 L +DWR GE YFMS+L+DGD A+NNGGWQW ASTG D PYFRIFNP QG++FDP G F Sbjct: 357 LHIDWRWGERYFMSRLIDGDYAANNGGWQWCASTGCDGQPYFRIFNPVSQGEKFDPNGDF 416 Query: 425 IRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478 IR W+PEL +V + YIH P ++ N + YP +VDHK+ TL Y AK Sbjct: 417 IRRWVPELRSVSSAYIHQPWTYPAVNSVL--YPARLVDHKQEREVTLRLYKTAK 468 >gi|313497105|gb|ADR58471.1| PhrB [Pseudomonas putida BIRD-1] Length = 480 Score = 440 bits (1132), Expect = e-121, Method: Composition-based stats. Identities = 189/476 (39%), Positives = 269/476 (56%), Gaps = 7/476 (1%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 +HL WLR+DLRI DN AL A+ IA+++ +P QW+ H + + F +L + Sbjct: 1 MHLTWLRSDLRIDDNTALSASTERGQT--IALWLVSPGQWQAHDDADCKVDFWLRNLHDL 58 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128 ++SL + I +D + + + C Q +V + +N +Y INE RRD L+ Sbjct: 59 RQSLEKLNIPLLIRTIDTWDQAPQAVLDICRQHQVQSVHWNEEYGINEQRRDDATRALLE 118 Query: 129 H-RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADL---RSLPVPAIRL 184 + S+ D + PG++L + ++V++ F+K +++L ++ R + A Sbjct: 119 KSAIQAHSYLDQLFFRPGTVLTRSGDYFQVFSQFKKTCLEHLHRSLPALARRVKRQAPLN 178 Query: 185 TGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244 G F A+ +P GE A L +F + + Y RD+PA GTSQ Sbjct: 179 IGSDPIPQHVEGFGKTTHALRDHWPAGEAEAQSRLSRFLDDTIDDYHHLRDLPAKPGTSQ 238 Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304 LSPYL+ GV+SPRQC + +G +W+NEL+WREFY+H+++ YP V Sbjct: 239 LSPYLAAGVISPRQCLHGALAGNRGEFDSGSTGVQTWINELLWREFYKHILSGYPQVSRH 298 Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364 + F TE + W L+AW+QG TGFPIIDAAMRQL GWMHNRLRM+ A FL K+ Sbjct: 299 RAFRAQTEALPWRDAPADLEAWEQGRTGFPIIDAAMRQLLHTGWMHNRLRMVVAMFLSKN 358 Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424 LL+DWR GE +FM L+DGDLA+NNGGWQW+ASTG D+VPYFRIFNP Q +RFDPQG F Sbjct: 359 LLIDWRKGERHFMRHLIDGDLAANNGGWQWSASTGTDAVPYFRIFNPVSQSQRFDPQGQF 418 Query: 425 IRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQ 480 IRHW+PEL + + IH P D + +Y PIVD + L + ++ Sbjct: 419 IRHWVPELQELDEKAIHQPIKPTDLFGNT-SYLSPIVDLSSSRQRALEAFKGLARR 473 >gi|254414764|ref|ZP_05028529.1| deoxyribodipyrimidine photolyase family [Microcoleus chthonoplastes PCC 7420] gi|196178612|gb|EDX73611.1| deoxyribodipyrimidine photolyase family [Microcoleus chthonoplastes PCC 7420] Length = 475 Score = 440 bits (1131), Expect = e-121, Method: Composition-based stats. Identities = 176/477 (36%), Positives = 246/477 (51%), Gaps = 17/477 (3%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 L W R DLRI+DN L AAC S KVI VF P+ + I+ + ++ L ++Q+ Sbjct: 6 LFWHRRDLRISDNIGLAAACQKSQ-KVIGVFCLDPDILERDDIAPARVTYMMGCLQELQQ 64 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130 ++ G + + + + + +NR E RD+ ++ L+ + Sbjct: 65 RYAEAGSQLLILH----QNPSQGIPTLADTLNAKAVVWNRDVEPYARTRDRTVQDALEEK 120 Query: 131 VI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPV------PAIR 183 I +SF D +L PG I ++ YKVYTPF K A SL Sbjct: 121 GIAVESFWDQLLHAPGEIRTNSGNPYKVYTPFWKNWKDQAKAAPAESLKNGEGLTETEQD 180 Query: 184 LTGPVTPSNIPRFFDYPFQAIDPM-FPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGT 242 + V +P + F + + GE+ A L +FC + Y QR++PAI GT Sbjct: 181 VVKKVGVMELPTAKELGFTWDNSLMLEPGEKAAKQRLEEFCDRAIDDYQHQRNLPAIDGT 240 Query: 243 SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKS-GAFSWLNELIWREFYRHLMAFYPSV 301 S+LS L G + R W + G +W EL WREFY+H + F+P + Sbjct: 241 SRLSAALKFGAIGIRTVWQATQTAIERSRSDETRDGIQTWQQELAWREFYQHALYFFPEL 300 Query: 302 CMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFL 361 G P+ E W+ + L QAW +G TG+PI+DAAMRQLN GWMHNR RMI ASFL Sbjct: 301 ASG-PYRDTFENFPWDNNQTLFQAWCEGRTGYPIVDAAMRQLNQTGWMHNRCRMIVASFL 359 Query: 362 VKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQ 421 KDL+++W+ GE YFM +L DGDLA+NNGGWQW+AS+G D P RIFNP Q +++DP Sbjct: 360 TKDLIINWQWGETYFMQKLYDGDLAANNGGWQWSASSGMDPKP-LRIFNPASQAQKYDPD 418 Query: 422 GTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478 G +IR WLPEL+++ T+ + D+ S YP PIVDHKK +Y K Sbjct: 419 GEYIRQWLPELSSLDTKDLVTGKISSDECS-SCGYPEPIVDHKKRQKEFKQRYQQQK 474 >gi|296105770|ref|YP_003617470.1| deoxyribodipyrimidine photo-lyase [Legionella pneumophila 2300/99 Alcoy] gi|295647671|gb|ADG23518.1| deoxyribodipyrimidine photo-lyase [Legionella pneumophila 2300/99 Alcoy] Length = 471 Score = 440 bits (1131), Expect = e-121, Method: Composition-based stats. Identities = 165/480 (34%), Positives = 253/480 (52%), Gaps = 19/480 (3%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M++ LVW R DLR+TDN A AC + + +I ++I + + Q+ +++ SL+ Sbjct: 1 MTIALVWFRQDLRLTDNPAFIEACSHHET-IIPLYIYDD---KCSVLGQAQAWWLHHSLI 56 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 + KSL+Q+G+ + S +E + Q + +++NR YE + RDK ++ Sbjct: 57 ALGKSLNQQGLSLVLRKGSP----LEIILELVTQYGLESVYWNRCYEPQVIARDKKIKLA 112 Query: 127 LQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185 L + I SF+ ++L P +I N +KV+TP+ K Q L + Sbjct: 113 LGEKGIKVHSFNGNLLHEPWTIKNKNGDFFKVFTPYWKQCRQIL--NIPSPFMLTKRPRG 170 Query: 186 GPVTPSNIPRFFDYPF----QAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQG 241 +T ++ ++ P + GE+ A L +F + Y +RD PA Sbjct: 171 IEITSDDLGKWKLLPAINWAARFSEYWTPGEEGAQKKLNEFVVHHLSGYKRERDFPAKNA 230 Query: 242 TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSV 301 TS+LSP+L G +SP R E + +L+EL WREF +L+ +P + Sbjct: 231 TSRLSPHLHFGEISPW-VILRALELAKLEQTCDLASLEHFLSELGWREFSVYLLYHFPKL 289 Query: 302 CMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFL 361 F + W D LL W++G TG+PIIDA MR+L G+MHNR+RMI ASFL Sbjct: 290 DCEN-FRKEFDAFPWQNDEQLLTCWQKGMTGYPIIDAGMRELWATGYMHNRVRMIVASFL 348 Query: 362 VKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQ 421 KDLL+DWR G ++F+ L+D DLA+N+ WQW A G D+ PYFRIFNP +Q ++FDP Sbjct: 349 TKDLLIDWRSGAQWFLDTLVDADLANNSASWQWVAGCGADAAPYFRIFNPVLQSQKFDPD 408 Query: 422 GTFIRHWLPELNNVPTQYIHAPHSWLDKNDL--SLNYPLPIVDHKKACHHTLNQYYAAKK 479 G +IR W+PEL + +Q IH P + + + + YP PI+DH++A L+ Y KK Sbjct: 409 GVYIRQWIPELAQLNSQSIHQPWTDANASSIFLGKKYPKPIIDHQEARTKALSYYQQIKK 468 >gi|258624237|ref|ZP_05719186.1| deoxyribodipyrimidine photolyase, cyclobutane pyrimidine dimer-specific [Vibrio mimicus VM603] gi|258583388|gb|EEW08188.1| deoxyribodipyrimidine photolyase, cyclobutane pyrimidine dimer-specific [Vibrio mimicus VM603] Length = 469 Score = 439 bits (1130), Expect = e-121, Method: Composition-based stats. Identities = 209/474 (44%), Positives = 284/474 (59%), Gaps = 10/474 (2%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 + LVW R DLR DN AL AA + + V AV++A P+QW QH ++ Q+ FI+ L + Sbjct: 1 MKLVWFRRDLRSFDNTALTAAIESGET-VAAVYVAAPQQWHQHHLAPIQADFIWRRLAAL 59 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128 Q+ L+ + Y Q ++F ++ ++ ++ NR YE++E +RD E+ L Sbjct: 60 QQELAAINVPLFYQQVADFREAATAVNQLAKALNANQVLANRDYELDEQQRDLRTEQLLA 119 Query: 129 HRVICKS-FDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187 + I S FDD +LPPGS+ + +KV+TPF++A + + A Sbjct: 120 EQGISWSAFDDKCILPPGSVRTKQGEFFKVFTPFKRAWLSLFQPPVIPRNHSAAPWDVPN 179 Query: 188 VTPSNIP---RFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244 + + F+YP + +P+ + LR FC+E+V Y + RD PA +GTS Sbjct: 180 EFSHLVWHTDQMFNYP-RVDSSQWPVEFEVIRTQLRDFCRERVQDYHQWRDFPAREGTSV 238 Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304 LSPYL+IG LS RQC RL E + GA WL+ELIWREFY+HL+A P++ Sbjct: 239 LSPYLAIGALSARQCVARLYRE--SAMSALSEGAQVWLSELIWREFYQHLVAIEPNISKS 296 Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364 + F+ W ++EW DS Q W +G TG+PI+DAAMRQLN GWMHNRLRMI ASFL KD Sbjct: 297 RDFLEWGARLEWWNDSEKFQRWCEGNTGYPIVDAAMRQLNQTGWMHNRLRMIVASFLTKD 356 Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424 L +DWR GE YFMS+L+DGD A+NNGGWQW ASTG D PYFRIFNP QG++FDP G F Sbjct: 357 LHIDWRWGERYFMSRLIDGDYAANNGGWQWCASTGCDGQPYFRIFNPVSQGEKFDPNGDF 416 Query: 425 IRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478 IR W+PEL +V + YIH P ++ N + YP P+VDHK+ TL Y AK Sbjct: 417 IRRWVPELRSVSSAYIHQPWTYPAVNSVL--YPPPLVDHKQEREVTLRLYKTAK 468 >gi|26987475|ref|NP_742900.1| deoxyribodipyrimidine photo-lyase [Pseudomonas putida KT2440] gi|24982139|gb|AAN66364.1|AE016264_8 deoxyribodipyrimidine photolyase [Pseudomonas putida KT2440] Length = 480 Score = 439 bits (1130), Expect = e-121, Method: Composition-based stats. Identities = 190/476 (39%), Positives = 267/476 (56%), Gaps = 7/476 (1%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 +HL WLR+DLRI DN AL A+ IA+++ +P QW+ H + + F +L + Sbjct: 1 MHLTWLRSDLRIDDNTALSASTERG--PTIALWLVSPGQWQAHDDADCKVDFWLRNLHDL 58 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128 ++SL + I +D + + + C Q +V + +N +Y INE RRD L+ Sbjct: 59 RQSLEKLNIPLLIRTIDTWDQAPQAVLDICRQHQVQSVHWNEEYGINEQRRDDATRAMLE 118 Query: 129 H-RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADL---RSLPVPAIRL 184 + S D + PG++L + ++V++ F+K +++L ++ R + A Sbjct: 119 KSAIQAHSHLDQLFFRPGTVLTRSGDYFQVFSQFKKTCLEHLHRSLPALARRVKRQAPLN 178 Query: 185 TGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244 G F A+ +P GE A L +F E + Y RD+PA GTSQ Sbjct: 179 IGSDPIPQHVEGFGKTTPALRDHWPAGEAEAQSRLSRFLDETIDDYHHLRDLPAKPGTSQ 238 Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304 LSPYL+ GV+SPRQC + +G +W+NEL+WREFY+H+++ YP V Sbjct: 239 LSPYLAAGVISPRQCLHGALAGNRGEFDSGSTGVQTWINELLWREFYKHILSGYPQVSRH 298 Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364 + F TE + W L AW+QG TGFPIIDAAMRQL GWMHNRLRM+ A FL K+ Sbjct: 299 RAFRAQTEALPWRDAPADLAAWEQGRTGFPIIDAAMRQLLHTGWMHNRLRMVVAMFLSKN 358 Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424 LL+DWR GE +FM L+DGDLA+NNGGWQW+ASTG D+VPYFRIFNP Q +RFDPQG F Sbjct: 359 LLIDWRKGERHFMRHLIDGDLAANNGGWQWSASTGTDAVPYFRIFNPVSQSQRFDPQGRF 418 Query: 425 IRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQ 480 IRHW+PEL + + IH P D + +Y PIVD + L + ++ Sbjct: 419 IRHWVPELQELDEKAIHQPIKSTDLFGNT-SYLSPIVDLSSSRQRALEAFKGLPRR 473 >gi|289208005|ref|YP_003460071.1| deoxyribodipyrimidine photo-lyase [Thioalkalivibrio sp. K90mix] gi|288943636|gb|ADC71335.1| Deoxyribodipyrimidine photo-lyase [Thioalkalivibrio sp. K90mix] Length = 469 Score = 439 bits (1130), Expect = e-121, Method: Composition-based stats. Identities = 172/479 (35%), Positives = 248/479 (51%), Gaps = 19/479 (3%) Query: 8 SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67 LVWLR DLR+ D AL+AA A VI VFI P++ Q A + +++ SL Sbjct: 3 GPTLVWLRQDLRLADQPALHAAVERGGA-VIPVFIHAPDEDLQWPPGAASNWWLHHSLQS 61 Query: 68 VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127 + ++L++ G S++ L + T +++NR YE V RD+ ++ L Sbjct: 62 LNEALNKAGSPLVVRAGP----SLDTLRELVAETGATAVYWNRVYEPARVLRDQGIKAGL 117 Query: 128 QHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 + + +SF+ ++L+ P + Y+V+TPF +A +Q ++ + P Sbjct: 118 RADGLDVRSFNAALLIEPWDVETGQGGPYRVFTPFWRACLQRGIEQNPLPAPSRLPAPGK 177 Query: 187 PVTPSNIPRFFDYP----FQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGT 242 P + P + + GE+ A L +F ++ + Y + RD P GT Sbjct: 178 PPRSLMLDDLELLPPIDWAGGLRATWTPGERGARDRLERFLEQAIAGYADSRDRPDQDGT 237 Query: 243 SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVC 302 S+LSP+L G +SPRQ L++ V L K G S++ EL WR+F H++ +P Sbjct: 238 SRLSPHLHFGEVSPRQVLRALRDAGVSLDHK---GPESFVRELGWRDFAHHVLYHFPHTT 294 Query: 303 MGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLV 362 +P P E W + L AW+QG TG PI+DAAMRQL GWMHNRLRM+ SFL Sbjct: 295 E-QPLNPRFEDFPWRESEADLAAWQQGRTGIPIVDAAMRQLWETGWMHNRLRMVVGSFLT 353 Query: 363 KDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQG 422 K+L + W G +F L+D DLASN GWQWA G D+ PYFRIFNP QG+++DP G Sbjct: 354 KNLRLHWGHGARWFWDTLVDADLASNTLGWQWAGGCGADAAPYFRIFNPQRQGEQYDPDG 413 Query: 423 TFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481 F+R +LP L T+YIHAP + YP PIVD K + L + A KK S Sbjct: 414 RFVRSFLPVLKKTETRYIHAP-----GAGGTPGYPDPIVDLKASRQAALEAFEAIKKTS 467 >gi|297579803|ref|ZP_06941730.1| deoxyribodipyrimidine photolyase [Vibrio cholerae RC385] gi|297535449|gb|EFH74283.1| deoxyribodipyrimidine photolyase [Vibrio cholerae RC385] Length = 469 Score = 439 bits (1129), Expect = e-121, Method: Composition-based stats. Identities = 211/474 (44%), Positives = 286/474 (60%), Gaps = 10/474 (2%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 + LVW R DLR DN AL AA ++ D V A++IATPEQW QH ++ Q+ I+ L ++ Sbjct: 1 MRLVWFRRDLRSFDNTALTAALNSGD-PVAAMYIATPEQWHQHHLAPIQADLIWRRLAEL 59 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128 Q+ L+ + Y Q ++F + + T++ NR YE++E +RD+ ++ L Sbjct: 60 QQELAALNVPLFYQQVADFQAAAVAVSQVAKTLNATQVLANRDYELDEQQRDQSAQQLLS 119 Query: 129 HRVICKS-FDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187 + I S FDD +LPPGS+ + +KV+TPF++A + + A+ Sbjct: 120 EQGITWSAFDDKCVLPPGSVRTKQGEFFKVFTPFKRAWLTLFQPPVIGKNRPAALWDVPS 179 Query: 188 VTPSNIP---RFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244 + + FDYP P + + LR FC+E+V Y + RD PA +GTS Sbjct: 180 ALAELVWHPEQTFDYPRIDSTP-WAADFETVRAQLRDFCRERVQDYHQARDFPAREGTSS 238 Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304 LSPYL+IGVLS RQC RL E + + GA WL+ELIWREFY+HL+A P++ Sbjct: 239 LSPYLAIGVLSARQCVARLYHE--SSMGELSEGAQVWLSELIWREFYQHLVAIEPNLSKS 296 Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364 + F+ W ++EW D+ Q W +G TG+PI+DAAMRQLN GWMHNRLRMI ASFL KD Sbjct: 297 RDFVEWGARLEWWNDNEKFQLWCEGKTGYPIVDAAMRQLNQTGWMHNRLRMIVASFLTKD 356 Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424 L +DWR GE YFMS+L+DGD A+NNGGWQW ASTG D PYFRIFNP QG++FDP G F Sbjct: 357 LHIDWRWGERYFMSRLIDGDYAANNGGWQWCASTGCDGQPYFRIFNPVSQGEKFDPNGDF 416 Query: 425 IRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478 IR W+PEL +V + YIH P ++ N + YP +VDHK+ TL Y AK Sbjct: 417 IRRWVPELRSVSSAYIHQPWTYPAVNSVL--YPARLVDHKQEREVTLRLYKTAK 468 >gi|302404190|ref|XP_002999933.1| deoxyribodipyrimidine photo-lyase [Verticillium albo-atrum VaMs.102] gi|261361435|gb|EEY23863.1| deoxyribodipyrimidine photo-lyase [Verticillium albo-atrum VaMs.102] Length = 589 Score = 439 bits (1129), Expect = e-121, Method: Composition-based stats. Identities = 174/501 (34%), Positives = 263/501 (52%), Gaps = 28/501 (5%) Query: 3 ATTAMS--------VHLVWLRNDLRITDNKALYAA---CHNSDAKVIAVFIATPEQWRQH 51 A T+M+ + W + DLR++DN +L A ++ +IA++I +P+ + H Sbjct: 81 ADTSMTRKGVKVGAAVVHWFKMDLRLSDNTSLRLASERAKDAGVPLIAMYIISPQDFEAH 140 Query: 52 GISARQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQ 111 + + F +L ++ L++ I + + + T LF N + Sbjct: 141 LTAPIRVDFTLRTLEILKHDLAKLDIPLHIETVEKRRQISDRIVELMGEWGATHLFANME 200 Query: 112 YEINEVRRD-KLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLV 170 YE++E+RR+ KL+ + ++ D+ ++PPG + + Y VYTP+ ++ ++++ Sbjct: 201 YEVDELRREAKLVRTFADKGMSFEAVHDTCVVPPGQLQTGTGKQYAVYTPWYRSWMRHVH 260 Query: 171 QAD--------LRSLPVPAIRLTGPVTPSNIP------RFFDYPFQAIDPMFPIGEQNAL 216 + P A G + S IP + +FP GE A Sbjct: 261 ENPDRLELFDHPNKNPSSAKERFGNLFASEIPEEVPNKTLGAEEKKRFRALFPAGEHAAR 320 Query: 217 HILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFV-DLLIKPK 275 L KFC + Y ++R+IP GTS LS +L+ G +S R C ++ L Sbjct: 321 ERLDKFCDGSISSYADRRNIPGDNGTSSLSMHLASGTISSRTCVRTARDRNKTKKLDGGN 380 Query: 276 SGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPI 335 G +W++E+ WR+FY+H++ +P VCM KPF P IEW+ + +AW +G TGFPI Sbjct: 381 GGIQTWISEVAWRDFYKHVLVHWPYVCMNKPFKPEYANIEWSYEKDDFKAWCEGKTGFPI 440 Query: 336 IDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWA 395 +DAAMRQ+ +GWMHNR RMI ASFL KDLL+DWR+GE +FM L+DGD ASNNGGW ++ Sbjct: 441 VDAAMRQMIHVGWMHNRCRMIVASFLCKDLLIDWRMGERFFMEHLVDGDFASNNGGWGFS 500 Query: 396 ASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDL-SL 454 AS G D PYFRIFNP +Q ++FDP G +IR W+PEL V + IH P+ Sbjct: 501 ASVGVDPQPYFRIFNPLLQSEKFDPDGEYIRKWVPELAGVKGKAIHDPYGRGAGPQAKKK 560 Query: 455 NYPLPIVDHKKACHHTLNQYY 475 YP PIV HK L +Y Sbjct: 561 GYPEPIVAHKDVRERALTEYK 581 >gi|254786801|ref|YP_003074230.1| deoxyribodipyrimidine photolyase [Teredinibacter turnerae T7901] gi|237686103|gb|ACR13367.1| deoxyribodipyrimidine photolyase [Teredinibacter turnerae T7901] Length = 465 Score = 439 bits (1128), Expect = e-121, Method: Composition-based stats. Identities = 196/469 (41%), Positives = 269/469 (57%), Gaps = 5/469 (1%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 ++L+W R DLR+ DN AL A+ AV+ W +H +S + I L ++ Sbjct: 1 MNLMWFRADLRVADNPALCASMQAG--PTAAVYTLCEATWSEHRLSPAKISLICRQLEKL 58 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128 + +L+ + CSNF L S+ + ++ +++N ++EINE K + LQ Sbjct: 59 ESALAALHVPLIIIPCSNFKRVPGELKSFAAKHNISAVYFNHEFEINERLLSKRVIAELQ 118 Query: 129 HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188 + SF+D + PG + + YKV+TPF+K + P P + P+ Sbjct: 119 PHIDTWSFNDQCAIAPGKLKTGSDDWYKVFTPFKKRYLAEFSSMARAVYPTPKAQKKIPI 178 Query: 189 TPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPY 248 T S P ++P GE A L +F K+ + Y E RD PA+ GTS LSPY Sbjct: 179 TSSIAPLQQVQFESCWQNLWPAGEDEAHRRLHRFGKDGMSRYHEDRDFPAVDGTSTLSPY 238 Query: 249 LSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFI 308 L++G +S RQC + ++ + GA +WL+EL+WR+FYRHL+ YP +C K F Sbjct: 239 LAVGAISTRQCMDAAIQQGGMENDQSTQGAQTWLSELVWRDFYRHLLYGYPDLCKFKAFQ 298 Query: 309 PWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVD 368 TE++ W DS LL AW++G TGFPI+DAAM+QL GWMHNRLRMITA FL K L VD Sbjct: 299 QNTERLPWRHDSRLLTAWQEGRTGFPIVDAAMKQLVQTGWMHNRLRMITAMFLTKHLFVD 358 Query: 369 WRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHW 428 WR+GE++FM L+DGDLASNNGGWQW+ASTG D+ PYFRIFNPT Q +RFDP G FIRH+ Sbjct: 359 WRLGEDFFMQHLVDGDLASNNGGWQWSASTGVDAAPYFRIFNPTRQSERFDPNGEFIRHY 418 Query: 429 LPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477 LPEL N+ + IH+P + S YP PIVDH A T + Sbjct: 419 LPELKNLSNKAIHSPSVIEAE---SCGYPKPIVDHSTAVKQTKAWFKEL 464 >gi|88857379|ref|ZP_01132022.1| putative deoxyribodipyrimidine photolyase [Pseudoalteromonas tunicata D2] gi|88820576|gb|EAR30388.1| putative deoxyribodipyrimidine photolyase [Pseudoalteromonas tunicata D2] Length = 475 Score = 439 bits (1128), Expect = e-121, Method: Composition-based stats. Identities = 189/468 (40%), Positives = 278/468 (59%), Gaps = 6/468 (1%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 ++L+WLR DLRI DN AL AA + + A+FIATPEQW+QH ++ Q FI L + Sbjct: 1 MNLMWLRRDLRIDDNPALIAALQSGPTQ--ALFIATPEQWQQHDMAPIQVDFIERHLNLL 58 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128 + L++ GI N+ L +C Q+++++F N++ E+NE RD+ + L Sbjct: 59 AEQLAKYGIPLTVLTVPNYASCTIALKEFCHTQQISQIFANQEVELNECIRDRQI---LA 115 Query: 129 HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188 + ++ V++P G++ M+ V+TPFR A ++ L Q +++ P+ LT Sbjct: 116 AGLNLTLYEADVIVPKGTVKTGKGDMFHVFTPFRNAWVKQLQQHSIKTSSHPSEVLTHYQ 175 Query: 189 TPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPY 248 + + + +P+ H++ +F + K Y + RD PA++GTS +SPY Sbjct: 176 SIRAEKIVLE-ATKKSSEKWPLVSDIKKHVMPEFLQTKHADYKQYRDFPALKGTSGVSPY 234 Query: 249 LSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFI 308 L+IG LS + +++ + +L K+ F WLNEL WR+FY+HL+ YP++ G F Sbjct: 235 LAIGALSSKMLASQVLQHVPFILDNAKADIFCWLNELAWRDFYKHLLFAYPNLIKGITFS 294 Query: 309 PWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVD 368 + W + AW +G TG+P++DAAMRQL GWMHNRLRM+ ASFL K LLVD Sbjct: 295 EKYSNLNWPNSNEYFIAWCEGRTGYPLVDAAMRQLRQTGWMHNRLRMVVASFLTKHLLVD 354 Query: 369 WRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHW 428 WR+GE++FM L+DGD ++NNGGWQWAA TG D+ PYFRIFNP Q ++FDP G+FIR + Sbjct: 355 WRLGEQFFMQHLIDGDFSANNGGWQWAAGTGCDAQPYFRIFNPITQSEKFDPDGSFIRKY 414 Query: 429 LPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYA 476 LPEL+NVP +YIH PHS+L S Y IV+H +A L Y Sbjct: 415 LPELSNVPVKYIHLPHSYLAATGQSECYWPAIVEHSQARQIALAFYKQ 462 >gi|218437085|ref|YP_002375414.1| deoxyribodipyrimidine photo-lyase [Cyanothece sp. PCC 7424] gi|218169813|gb|ACK68546.1| Deoxyribodipyrimidine photo-lyase [Cyanothece sp. PCC 7424] Length = 475 Score = 438 bits (1126), Expect = e-120, Method: Composition-based stats. Identities = 174/477 (36%), Positives = 250/477 (52%), Gaps = 17/477 (3%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 L W R DLRI+DN L A S V+ +F P+ + ++ + ++ L ++Q+ Sbjct: 6 LFWHRRDLRISDNIGLSTARQRS-PHVVGIFCLDPDILEKDDVAPARVTYLIGCLQELQQ 64 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130 + Q G + + + + +F+N E RD+ + LQ + Sbjct: 65 NYQQAGSQLLILKGKPS----QAIPILAESLKAQAVFWNLDVEPYAQTRDEQVSNALQEK 120 Query: 131 VICKS-FDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLP------VPAIR 183 I F D +L PG IL + + YKVYTPF + Q L ++ +++L I Sbjct: 121 GIATEKFWDQLLHAPGKILTLSKEPYKVYTPFWRNWSQELKKSPVQALEDVQGLNQQQIS 180 Query: 184 LTGPVTPSNIPRFFDYPFQAIDPM-FPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGT 242 L ++P D + +P+ GE A L++FCK + Y EQRD+PAI GT Sbjct: 181 LAKEAGIIDLPTAKDLGYLWENPLMLNPGETAAKERLQEFCKTSINNYQEQRDLPAIDGT 240 Query: 243 SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKP-KSGAFSWLNELIWREFYRHLMAFYPSV 301 S+LS L G + R W E + + + +W EL WREFY+H M F+P + Sbjct: 241 SRLSAALKFGAIGIRTVWQATLELYENSRSDEVRESIQTWQQELAWREFYQHCMYFFPEL 300 Query: 302 CMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFL 361 G P+ + W+ D L QAW +G TG+PI+DAAMRQLN GWMHNR RMI ASFL Sbjct: 301 ADG-PYRKEFREFPWDNDEDLFQAWCEGKTGYPIVDAAMRQLNETGWMHNRCRMIVASFL 359 Query: 362 VKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQ 421 KDL+++W+ GE+YFM +L DGDL++NNGGWQW+AS+G D P RIFNP Q +++DP Sbjct: 360 TKDLIINWQWGEKYFMQKLYDGDLSANNGGWQWSASSGMDPKP-LRIFNPASQSQKYDPD 418 Query: 422 GTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478 G +IR W+PEL ++ T+Y+ YP PIVDHKK +Y K Sbjct: 419 GEYIRQWIPELKSLDTEYLVT-GKIPTSELRQCGYPEPIVDHKKRQAEFKQRYKEVK 474 >gi|119473269|ref|ZP_01614930.1| putative deoxyribodipyrimidine photolyase [Alteromonadales bacterium TW-7] gi|119444513|gb|EAW25832.1| putative deoxyribodipyrimidine photolyase [Alteromonadales bacterium TW-7] Length = 464 Score = 437 bits (1125), Expect = e-120, Method: Composition-based stats. Identities = 193/468 (41%), Positives = 270/468 (57%), Gaps = 9/468 (1%) Query: 10 HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69 L W R DLR+ N+AL A +N A+F +QW+QH + Q + + +Q Sbjct: 3 TLFWFRRDLRLFSNEALIEALNNGAKH--AIFFVCEKQWQQHQAAPIQIDLLKRRVTYLQ 60 Query: 70 KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH 129 + L+ GI +F D L S+C + + N +YE+NEV RDK + + Sbjct: 61 EQLANFGITLNVINAPSFSDCESELLSFCETHDIQHIIANTEYELNEVNRDKAVLAQCDK 120 Query: 130 R-VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188 R + ++ ++ P GSI N + +MYKV+TPF++A ++ P + + Sbjct: 121 RSITFTLYEGDLIAPVGSIKNQSNEMYKVFTPFKRAWLKQYQDTHFSLAQWPQEQNPIKI 180 Query: 189 TPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPY 248 S +P+ ++ L ++ F +K+ Y +QRDIP+I+GTS LSPY Sbjct: 181 EKSQH-----LESDGSSDKWPVDDETLLSVVDNFICDKLTSYDDQRDIPSIKGTSGLSPY 235 Query: 249 LSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFI 308 L++G++SP+Q +++ + D+L KS F+W+NELIWREFYRHL+A YP + G+ F Sbjct: 236 LALGIVSPKQLLINIQQRYPDILTTSKSKTFTWVNELIWREFYRHLIAEYPKLSRGENFN 295 Query: 309 PWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVD 368 +EW K AW +G TG+P++DAAM QL GWMHNRLRM+ ASFL K LL+D Sbjct: 296 EKYNPVEWRKSEKEFNAWCEGRTGYPLVDAAMLQLKQTGWMHNRLRMVVASFLTKHLLID 355 Query: 369 WRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHW 428 WR GE +FM L+DGDLASNNGGWQWAASTG D+ PYFRIFNP Q +RFDP G FIR + Sbjct: 356 WREGERFFMQHLIDGDLASNNGGWQWAASTGCDAQPYFRIFNPITQSERFDPTGKFIRKY 415 Query: 429 LPELNNVPTQYIHAPHSWLDKNDLSLN-YPLPIVDHKKACHHTLNQYY 475 LPEL NVP ++IH PH++L Y IVDHK A L + Sbjct: 416 LPELENVPDKHIHFPHTYLAATGKGSECYWPAIVDHKAARERALAAFK 463 >gi|218677191|ref|YP_002396010.1| Deoxyribodipyrimidine photolyase [Vibrio splendidus LGP32] gi|218325459|emb|CAV27611.1| Deoxyribodipyrimidine photolyase [Vibrio splendidus LGP32] Length = 486 Score = 437 bits (1125), Expect = e-120, Method: Composition-based stats. Identities = 200/488 (40%), Positives = 293/488 (60%), Gaps = 28/488 (5%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 ++W+R DLRI DN AL +A N + IAVFI+TP+QW+QH ++ ++ FIY L Q + Sbjct: 4 ILWIRRDLRIHDNPALVSAVENGAS--IAVFISTPQQWQQHHLAPIKADFIYRHLKQFES 61 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130 L++ GI + + ++F+D L + C Q T ++ N + E++E RDK L Sbjct: 62 QLAEFGITLLHLKATDFNDQASQLINLCKQVDATCVYANSEPEVDEQLRDKRLIAT---G 118 Query: 131 VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVP---------- 180 + K D +LP GS+LN +M+KV+TPF+ A ++ + + P Sbjct: 119 IKLKITDCDTILPLGSVLNKQGEMFKVFTPFKNAWLKEVQAKGIICSHAPVHSTGSAQAG 178 Query: 181 -----AIRLTGPVTPSNIPR-------FFDYPFQAIDP-MFPIGEQNALHILRKFCKEKV 227 +++ P P+ + + +D+ F D +P+ + ++ F KV Sbjct: 179 SSETDSLQNLSPQNPTPLNQSLSGFSGEYDFDFPRTDSERWPLSQDVLESVIPNFLANKV 238 Query: 228 YYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIW 287 Y RDIP+I+GTS LSPYL+IG +SPR +L ++ DLL + AFSWLNELIW Sbjct: 239 NDYSRLRDIPSIKGTSGLSPYLAIGAVSPRWLAIQLIQQQPDLLFDTQLPAFSWLNELIW 298 Query: 288 REFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIG 347 R+FY+HLM +P + G F ++W D+ +AW +G TG+P++DAAMRQL G Sbjct: 299 RDFYKHLMFHHPILVKGANFQQKYNGLDWYHDNPSFKAWCEGKTGYPLVDAAMRQLVETG 358 Query: 348 WMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFR 407 WMHNRLRM+ ASFL K LL+DWR GE +FMS L+DGD ++NNGGWQWA+STG D+ PYFR Sbjct: 359 WMHNRLRMVVASFLTKHLLIDWRWGERFFMSHLIDGDFSANNGGWQWASSTGCDAQPYFR 418 Query: 408 IFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKAC 467 IFNP Q ++FDP+G FIR ++PEL N+P +++H PH ++ KN + Y PIV+HK+A Sbjct: 419 IFNPITQSEKFDPKGIFIRKYIPELQNIPDKHVHFPHDFIAKNGIDSEYWQPIVEHKEAR 478 Query: 468 HHTLNQYY 475 L + Sbjct: 479 LRALAFFK 486 >gi|148546013|ref|YP_001266115.1| deoxyribodipyrimidine photo-lyase [Pseudomonas putida F1] gi|148510071|gb|ABQ76931.1| Deoxyribodipyrimidine photo-lyase type I [Pseudomonas putida F1] Length = 475 Score = 437 bits (1124), Expect = e-120, Method: Composition-based stats. Identities = 192/476 (40%), Positives = 269/476 (56%), Gaps = 7/476 (1%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 +HL WLR+DLRI DN AL A+ IA+++ +P QW+ H +A + F +L + Sbjct: 1 MHLTWLRSDLRIDDNTALSASTERG--PTIALWLVSPGQWQAHDDAACKVDFWLRNLHDL 58 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128 ++SL + I +D + + + C Q +V + +N +Y INE RRD L+ Sbjct: 59 RQSLEKLNIPLLIRTIDTWDQAPQAVLDVCRQHQVQSVHWNEEYGINEQRRDDATRALLE 118 Query: 129 H-RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADL---RSLPVPAIRL 184 + S+ D + PG++L + ++V++ F+K +++L ++ R + A Sbjct: 119 KSAIQAHSYLDQLFFRPGTVLTRSGDYFQVFSQFKKTCLEHLHRSLPALARRVKRQAPLN 178 Query: 185 TGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244 G F A+ +P GE A L +F E + Y RD+PA GTSQ Sbjct: 179 IGSDPIPQHVEGFGKTTPALRDHWPAGEAEAQSRLSRFLDETIDDYQHLRDLPAKPGTSQ 238 Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304 LSPYL+ GV+SPRQC + G +W+NEL+WREFY+H+++ YP V Sbjct: 239 LSPYLAAGVISPRQCLHGALASNRGEFDSGSMGVQTWINELLWREFYKHILSGYPQVSRH 298 Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364 + F TE + W L+AW+QG TGFPIIDAAMRQL GWMHNRLRMI A FL K+ Sbjct: 299 RAFRAQTEALPWRDAPADLEAWEQGRTGFPIIDAAMRQLLHTGWMHNRLRMIVAMFLSKN 358 Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424 LL+DWR GE +FM L+DGDLA+NNGGWQW+ASTG D+VPYFRIFNP Q +RFDPQG F Sbjct: 359 LLIDWRKGERHFMRNLIDGDLAANNGGWQWSASTGTDAVPYFRIFNPVSQSQRFDPQGHF 418 Query: 425 IRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQ 480 IRHW+PEL + + IH P D + +Y PIVD + L + ++ Sbjct: 419 IRHWVPELQALDEKAIHQPIKSTDLFGNT-SYLSPIVDLSSSRQRALEAFKGLPRR 473 >gi|52840467|ref|YP_094266.1| deoxyribodipyrimidine photolyase [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] gi|52627578|gb|AAU26319.1| deoxyribodipyrimidine photolyase [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] Length = 471 Score = 437 bits (1123), Expect = e-120, Method: Composition-based stats. Identities = 168/478 (35%), Positives = 249/478 (52%), Gaps = 15/478 (3%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M++ LVW R DLR+TDN A AC + + VI ++I + + Q+ +++ SL+ Sbjct: 1 MTIALVWFRQDLRLTDNPAFIEACSHHEI-VIPLYIYDD---KCSVLGQAQAWWLHYSLI 56 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 + KSL+Q+G+ + S E + Q V +++NR YE + RDK ++ Sbjct: 57 ALGKSLNQQGLSLVLRKGSP----QEIILELVAQYGVESVYWNRCYEPQVIARDKKIKLA 112 Query: 127 LQHR-VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNL-VQADLRSLPVPAIRL 184 L R + +SF+ ++L P +I N +KV+TP+ K Q L + + P Sbjct: 113 LVEREIKVQSFNGNLLHEPWTIKNKNGDFFKVFTPYWKQCRQILNIPSPFILTKRPRGIE 172 Query: 185 TGPVTPSNIPRFFDYPFQA-IDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS 243 + A + GE+ A L +F + Y RD PA TS Sbjct: 173 IASDDIGKWKLLPAINWAARFSEYWIPGEEGAQKKLDEFIVHHLSGYKRDRDFPAKNATS 232 Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCM 303 +LSP+L G +SP R E + +L+EL WREF +L+ +P + Sbjct: 233 RLSPHLHFGEISPW-VILRALELAKLEHTCDLASVEHFLSELGWREFSVYLLYHFPKLDC 291 Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363 F + W D LL W++G TG+PIIDA MR+L G+MHNR+RMI ASFL K Sbjct: 292 EN-FRKEFDAFPWQNDEQLLTCWQKGMTGYPIIDAGMRELWATGYMHNRVRMIVASFLTK 350 Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423 DLL+DWR G ++F+ L+D DLA+N+ WQW A G D+ PYFRIFNP +Q ++FDP G Sbjct: 351 DLLIDWRSGAQWFLDTLVDADLANNSASWQWVAGCGADAAPYFRIFNPILQSQKFDPDGV 410 Query: 424 FIRHWLPELNNVPTQYIHAPHSWLDKNDL--SLNYPLPIVDHKKACHHTLNQYYAAKK 479 +IR W+PEL + +Q IH P + D + + YP PI+DH++A L+ Y KK Sbjct: 411 YIRQWIPELAQLNSQSIHQPWTDADASSIFLGKKYPKPIIDHQEARTKALSYYQQIKK 468 >gi|255950764|ref|XP_002566149.1| Pc22g22550 [Penicillium chrysogenum Wisconsin 54-1255] gi|211593166|emb|CAP99543.1| Pc22g22550 [Penicillium chrysogenum Wisconsin 54-1255] Length = 581 Score = 436 bits (1122), Expect = e-120, Method: Composition-based stats. Identities = 174/491 (35%), Positives = 254/491 (51%), Gaps = 19/491 (3%) Query: 8 SVHLVWLRNDLRITDNKALYAA---CHNSDAKVIAVFIATPEQWRQHGISARQSHFIYAS 64 S + W ++DLR+ D++ALYAA +I +++ +PE W H S + F + Sbjct: 91 SAVVHWFKSDLRLHDSRALYAAYQFAKEHQVPLIGLYVVSPEDWTAHSTSPARVDFTLRT 150 Query: 65 LLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLE 124 L ++Q+ L + I + C Q L+ N +YE++E+RR+ L Sbjct: 151 LKRLQQDLGELDIPLYMETQDKRKTIPNRIVELCQQWGAKSLYANIEYEVDELRREAKLV 210 Query: 125 KRLQHR-VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQAD--------LR 175 + + D+ ++ PG++ + + Y VYTP+ ++ + L + Sbjct: 211 RLCADNDINFTPSHDTCVVTPGALASQQGKQYSVYTPWYRSWLAFLKENPDYLEVSEEPG 270 Query: 176 SLPVPAIRLTGP------VTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYY 229 S P A + N D + + ++P GE AL L F +EK Sbjct: 271 SNPGNARQQFKDFFDCNVPAAPNTHILLDEEQKRFEGLYPAGEHEALQRLDNFLEEKGKE 330 Query: 230 YVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWRE 289 Y E R + + + TS LSPY + G LS R K + + G +W++EL WR+ Sbjct: 331 YEETRSMLSGESTSVLSPYFACGALSARTAVATAKRINKGHIDRYNPGYMTWISELAWRD 390 Query: 290 FYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWM 349 FY+H++ +P +CM K F P IEW D QAW G TGFPI+DAAMRQL WM Sbjct: 391 FYKHVLVNWPFICMNKCFKPEHTNIEWEYDKDQFQAWCDGKTGFPIVDAAMRQLRHCAWM 450 Query: 350 HNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIF 409 HNR RM+ +SF KDL++DWR GE YFM L+DGD ASN+GGW + +STG D PYFRIF Sbjct: 451 HNRTRMVVSSFFTKDLMLDWRRGERYFMENLIDGDFASNHGGWGFGSSTGVDPQPYFRIF 510 Query: 410 NPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLN-YPLPIVDHKKACH 468 NP Q +RFDP+G +I+HWLPEL +V + IH P++ N YP PIVDH ++ Sbjct: 511 NPLRQSERFDPEGEYIQHWLPELRDVSGKAIHEPYARGAAEIAQKNGYPRPIVDHAESRD 570 Query: 469 HTLNQYYAAKK 479 L ++ A K Sbjct: 571 RALERFKKALK 581 >gi|86144852|ref|ZP_01063184.1| putative deoxyribodipyrimidine photolyase [Vibrio sp. MED222] gi|85837751|gb|EAQ55863.1| putative deoxyribodipyrimidine photolyase [Vibrio sp. MED222] Length = 481 Score = 436 bits (1122), Expect = e-120, Method: Composition-based stats. Identities = 198/483 (40%), Positives = 291/483 (60%), Gaps = 23/483 (4%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 ++W+R DLRI DN AL +A N + IAVFI+TP+QW+QH ++ ++ FIY L Q + Sbjct: 4 ILWIRRDLRIHDNPALVSAVENGVS--IAVFISTPQQWQQHHLAPIKADFIYRHLKQFES 61 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130 L++ GI + + ++F+D L + C Q T ++ N + E++E RD + + Sbjct: 62 QLAEFGITLLHLKATDFNDQAIQLINLCKQVDATYVYANSEPEVDEQLRD---KHLIASG 118 Query: 131 VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVP---------- 180 + K D +LP GS+LN +M+KV+TPF+ A ++ + + P P Sbjct: 119 IKLKITDCDTILPLGSVLNKQGEMFKVFTPFKNAWLKEVQAKGIICSPTPVHSTGSAQAG 178 Query: 181 AIRLTGPVTPSNIPR-------FFDYPFQAIDP-MFPIGEQNALHILRKFCKEKVYYYVE 232 + PS + + +D+ F D +P+ + ++ F KV Y Sbjct: 179 SSETDSLQNPSQLKQSLSGFSGEYDFEFPRTDSERWPLSQDVLESVIPNFLANKVNDYSR 238 Query: 233 QRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYR 292 RDIP+++GTS LSPYL+IG +SPR +L ++ DLL + AFSWLNELIWR+FY+ Sbjct: 239 LRDIPSVKGTSGLSPYLTIGAVSPRWLAIQLIQQQPDLLFDTQLPAFSWLNELIWRDFYK 298 Query: 293 HLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNR 352 HLM +P + G F ++W D+ +AW +G TG+P++DAAMRQL GWMHNR Sbjct: 299 HLMFHHPILVKGANFQQKYNGLDWYHDNPSFKAWCEGRTGYPLVDAAMRQLVETGWMHNR 358 Query: 353 LRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPT 412 LRM+ ASFL K LL+DWR GE +FMS L+DGD ++NNGGWQWA+STG D+ PYFRIFNP Sbjct: 359 LRMVVASFLTKHLLIDWRWGERFFMSHLIDGDFSANNGGWQWASSTGCDAQPYFRIFNPI 418 Query: 413 IQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLN 472 Q ++FDP+G FIR ++PEL N+P +++H PH ++ KN + Y PIV+HK+A L Sbjct: 419 TQSEKFDPKGIFIRKYIPELQNIPDKHVHFPHDFIAKNGIDSEYWQPIVEHKEARLRALA 478 Query: 473 QYY 475 + Sbjct: 479 FFK 481 >gi|148975313|ref|ZP_01812237.1| putative deoxyribodipyrimidine photolyase [Vibrionales bacterium SWAT-3] gi|145965237|gb|EDK30487.1| putative deoxyribodipyrimidine photolyase [Vibrionales bacterium SWAT-3] Length = 471 Score = 435 bits (1120), Expect = e-120, Method: Composition-based stats. Identities = 195/473 (41%), Positives = 293/473 (61%), Gaps = 13/473 (2%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 ++W+R DLRI DN AL +A N + IAVFI+TP++W QH ++ ++ FI+ L Q++ Sbjct: 4 ILWIRRDLRIHDNPALVSAIENGVS--IAVFISTPQKWHQHHLAPIKADFIFRHLKQLEA 61 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130 L+ GI + + ++FDD + L Q +F N + E++E RD+ L + Sbjct: 62 ELADLGITLLHLKATDFDDQSKQLTELYQQLGSQAVFANSEPEVDEQARDQQL---ISSG 118 Query: 131 VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPV--PAIRLTGPV 188 + + D V+LP GS+LN +M+KV+TPF+ A ++ + ++ P + + Sbjct: 119 INLQISDCDVMLPLGSVLNQQGEMFKVFTPFKNAWLKEVQAKGIQCSPAVLTSKNNAKAL 178 Query: 189 TPSNIPRF-----FDYPFQAIDP-MFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGT 242 P+N+ +D+ F +D +P+ + +++ F KV Y RDIP+++GT Sbjct: 179 LPNNLQTLQLASDYDFDFPHVDSSRWPLSQDVLGNVIPNFLANKVNDYAHLRDIPSVKGT 238 Query: 243 SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVC 302 S LSPYL+IG +SPR +L ++ DLL + AFSWLNELIWR+FY+HLM +P + Sbjct: 239 SGLSPYLAIGAVSPRWLAIQLIQQQPDLLFDTQLPAFSWLNELIWRDFYKHLMFHHPKLV 298 Query: 303 MGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLV 362 G F ++W +D +AW +G TG+P++DAAMRQL GWMHNRLRM+ ASFL Sbjct: 299 KGANFQQKYNGLDWYQDHPNFKAWCEGKTGYPLVDAAMRQLVDTGWMHNRLRMVVASFLT 358 Query: 363 KDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQG 422 K LL+DWR GE +FM L+DGD ++NNGGWQWA+STG D+ PYFRIFNP Q ++FDP+G Sbjct: 359 KHLLIDWRWGERFFMDHLIDGDFSANNGGWQWASSTGCDAQPYFRIFNPITQSEKFDPKG 418 Query: 423 TFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYY 475 FIR ++PEL N+P +++H PH ++ KN ++ Y PIV+HK+A L + Sbjct: 419 IFIRKYIPELKNIPDKHVHFPHDYIAKNGINSEYWQPIVEHKEARLRALAFFK 471 >gi|145588429|ref|YP_001155026.1| deoxyribodipyrimidine photo-lyase [Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1] gi|145046835|gb|ABP33462.1| deoxyribodipyrimidine photo-lyase type I [Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1] Length = 492 Score = 435 bits (1120), Expect = e-120, Method: Composition-based stats. Identities = 180/498 (36%), Positives = 255/498 (51%), Gaps = 35/498 (7%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGIS---------ARQ 57 M LVWLR DLR+ DN AL+ A S +V FI E + R+ Sbjct: 1 MQKGLVWLRRDLRLYDNAALHYALKESK-QVWVTFIFDEEILKPLLKGELDAQRLKHDRR 59 Query: 58 SHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEV 117 FI+ L Q+ + L ++G F +E + V +F N YE + + Sbjct: 60 VDFIWQGLEQIDEELRKQGGGLIVR----FGKPVECIPQIAKDLGVDTVFTNHDYEPSAI 115 Query: 118 RRDKLLEKRL-QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRS 176 RD+ ++ L + + +SF D V+ IL ++ ++ ++TP++ ++ L + DL + Sbjct: 116 ARDEAVKTLLAKSDIQFESFKDQVIFEKKEILTNSNTVFSIFTPYKNNWLKTLQEKDLVA 175 Query: 177 LPVPAIRLTGPVTP----SNIPRFFDYPF--QAIDPMFPIGEQNALHILRKFCKEKVYYY 230 A P IP F I+ P G + L F ++ Y Sbjct: 176 YECSAKPGQFAAIPKKLAQEIPTLESMGFCKTGIEAYLPPGAEGGQAFLEDFLP-RIDQY 234 Query: 231 VEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREF 290 RD PAI+G S LS +L G+LS R + GA WL+ELIWR+F Sbjct: 235 QVGRDFPAIKGVSYLSTHLRFGMLSIRGLVREAHRRM----LAGSMGATIWLSELIWRDF 290 Query: 291 YRHLMAFYPSVCMGKPFIPWTEKIEWNK---DSHLLQAWKQGYTGFPIIDAAMRQLNTIG 347 Y ++A +P + G F P + I W + L AW +G TG+P++DAAM QLN G Sbjct: 291 YFMILANHPRLAKGASFKPDYDNIVWEQGSVAKKLFAAWCEGKTGYPLVDAAMHQLNQSG 350 Query: 348 WMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFR 407 +MHNRLRM+ ASFL KDL VDWR GE YF L D +L+SNNGGWQWA+S+G D+ PYFR Sbjct: 351 YMHNRLRMVVASFLTKDLGVDWRWGEAYFAEHLNDFELSSNNGGWQWASSSGCDAQPYFR 410 Query: 408 IFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSW----LDKNDL--SLNYPLPIV 461 IFNP Q ++FDP+G FIR +LP+LN++ + IHAP L+ + +YPLP+V Sbjct: 411 IFNPITQSEKFDPEGKFIRRYLPQLNHLSKKSIHAPWKAGHIELEAAGITLGRDYPLPVV 470 Query: 462 DHKKACHHTLNQYYAAKK 479 DH +A TL +Y KK Sbjct: 471 DHDEARKKTLVRYSVVKK 488 >gi|119497467|ref|XP_001265492.1| deoxyribodipyrimidine photo-lyase Phr1, putative [Neosartorya fischeri NRRL 181] gi|119413654|gb|EAW23595.1| deoxyribodipyrimidine photo-lyase Phr1, putative [Neosartorya fischeri NRRL 181] Length = 584 Score = 435 bits (1120), Expect = e-120, Method: Composition-based stats. Identities = 180/499 (36%), Positives = 264/499 (52%), Gaps = 19/499 (3%) Query: 2 KATTAMSVHLVWLRNDLRITDNKALYAA---CHNSDAKVIAVFIATPEQWRQHGISARQS 58 +A A + + W ++DLR+ DN+AL A + +IA++I +P+ H +S + Sbjct: 85 RAIRANNAVVYWFKSDLRLYDNRALRLAYETAKEHNIPLIALYILSPQDLTAHLLSPARV 144 Query: 59 HFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVR 118 I +L Q+++ LS+ I + + + C Q L+ N +YE++E+R Sbjct: 145 DLILRTLHQLKRDLSELDIPLYLETQEIRKNIPQRIVDLCQQWGANHLYANLEYEVDELR 204 Query: 119 RDKLLEKRLQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQAD---- 173 R+ L + I + D+ ++PPG + + + Y VY+P+ + + L + Sbjct: 205 REAKLVRLCAKNGIKFDTAHDACVVPPGQVTSQQGKQYAVYSPWYRTWLAYLNENPDCLE 264 Query: 174 ----LRSLPVPAIRLTGPVTPSNIP------RFFDYPFQAIDPMFPIGEQNALHILRKFC 223 S P A + + S +P + + Q + ++P GE AL L F Sbjct: 265 LSEEPGSNPGDARKYFKELFDSEVPAAPENKQLSEEEKQHLGQLYPAGEHEALRRLEAFL 324 Query: 224 KEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLN 283 +EKV Y E R++ + Q TS LSPY + G+LS R + L G W+ Sbjct: 325 EEKVRDYAEARNMVSGQTTSILSPYFASGLLSARTAIEHARRANKGSLQHGDPGLVHWIG 384 Query: 284 ELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQL 343 E+ WREFYRH++ +PS+CM K F P +EW D W +G TGFPI+DAAMRQ+ Sbjct: 385 EVAWREFYRHVLVHWPSICMNKCFKPEFTNLEWEYDEDRFTTWCEGKTGFPIVDAAMRQV 444 Query: 344 NTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSV 403 WMHNR RMI ASFL KDLL+DWR GE YFM L+DGD ASN+GGW + +STG D Sbjct: 445 KQDKWMHNRTRMIVASFLSKDLLIDWRRGERYFMETLIDGDFASNHGGWGFGSSTGVDPQ 504 Query: 404 PYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLN-YPLPIVD 462 PYFRIFNP Q +RFDP G +IR W+PEL ++ IH P++ + N YP P+VD Sbjct: 505 PYFRIFNPLRQSERFDPDGEYIRKWVPELRDIKEAAIHEPYARGAGANAEKNGYPRPMVD 564 Query: 463 HKKACHHTLNQYYAAKKQS 481 H K+ L++Y A K Sbjct: 565 HSKSRDLALHRYKRACKNG 583 >gi|77362362|ref|YP_341936.1| putative deoxyribodipyrimidine photolyase [Pseudoalteromonas haloplanktis TAC125] gi|76877273|emb|CAI89490.1| putative deoxyribodipyrimidine photolyase [Pseudoalteromonas haloplanktis TAC125] Length = 468 Score = 435 bits (1120), Expect = e-120, Method: Composition-based stats. Identities = 186/468 (39%), Positives = 268/468 (57%), Gaps = 5/468 (1%) Query: 10 HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69 L W R DLR+ N+AL A +N A+F +QW+QH + Q + + + Sbjct: 3 TLFWFRRDLRLFSNEALIQALNNGANH--AIFFICEKQWQQHQAAPIQIDLLKRRITYLH 60 Query: 70 KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH 129 + L+ GI F D L +C V + N +YE+NEV RDK + + Sbjct: 61 QQLADHGITLHIIDAPYFADCETQLIDFCKANNVKHVIANTEYELNEVNRDKAILAKCDE 120 Query: 130 R-VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188 + ++ ++ P GS+ N + +MYKV+TPF++A ++ ++ P ++G Sbjct: 121 LSITFTLYEGDLIAPVGSVKNQSNEMYKVFTPFKRAWLKQYIEVHFSLPQWPVEHVSGGA 180 Query: 189 TPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPY 248 S + +P+ ++ ++ F +K+ Y + RDIP+I+GTS LSPY Sbjct: 181 QLSKNETNL-LKGDSSSEKWPVDDKTLATVVDNFICDKLTSYDDHRDIPSIKGTSGLSPY 239 Query: 249 LSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFI 308 L++G++S +Q +++ + D+L KS F+W+NELIWREFYRHL+A +P + G F Sbjct: 240 LALGIISTKQLLINIQQRYPDILSTSKSKTFTWVNELIWREFYRHLIAQFPKLSRGDNFN 299 Query: 309 PWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVD 368 + W +AW +G TG+P++DAAMRQL GWMHNRLRM+ ASFL K LL+D Sbjct: 300 EKYNAVVWRSSDDDFKAWCEGRTGYPLVDAAMRQLLQTGWMHNRLRMVVASFLTKHLLID 359 Query: 369 WRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHW 428 WR GE +FM L+DGDLASNNGGWQWAASTG D+ PYFR+FNP Q +RFDP G FIR + Sbjct: 360 WRKGERFFMQHLIDGDLASNNGGWQWAASTGCDAQPYFRVFNPIRQSERFDPNGEFIRKY 419 Query: 429 LPELNNVPTQYIHAPHSWLDKNDLSLN-YPLPIVDHKKACHHTLNQYY 475 +PEL NVP ++IH PHS+L S + Y IVDHK A L + Sbjct: 420 IPELENVPDKHIHFPHSYLASLGQSDSCYWPAIVDHKAARERALAAFK 467 >gi|262369609|ref|ZP_06062937.1| deoxyribodipyrimidine photolyase FAD-binding [Acinetobacter johnsonii SH046] gi|262315677|gb|EEY96716.1| deoxyribodipyrimidine photolyase FAD-binding [Acinetobacter johnsonii SH046] Length = 475 Score = 435 bits (1120), Expect = e-120, Method: Composition-based stats. Identities = 180/477 (37%), Positives = 267/477 (55%), Gaps = 14/477 (2%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 ++++W R DLRI D+ AL+ A + ++A+ I +P+QW H +A + L + Sbjct: 1 MNIIWFRQDLRIHDHAALWHASQHG--PMLALVILSPQQWLLHHDAAVKIDLYVRQLHDL 58 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL- 127 ++SL+Q I + D L S C +V K+F N + +NE++RD +++ L Sbjct: 59 KQSLAQLNIPLLILNIPLWQDIPPQLSSLCHTLQVQKIFANIEMGVNELKRDAEVQQCLN 118 Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT-- 185 Q + F D L P SI N + + Y+V+ F+K + L + P+P+ + Sbjct: 119 QQHIEFTLFQDRTLFPLNSIRNQSDKPYQVFGAFKKTCYERLNIGLPQCYPLPSAQQPIL 178 Query: 186 -------GPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPA 238 ++ I +P E AL +L F KV Y ++RD P Sbjct: 179 LPADLNAAIPHIESLIHVNTNELNQIKAYWPETEIYALSVLDDFIDHKVSDYQKERDFPF 238 Query: 239 IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFY 298 + TSQLS YL++G++S RQC N L + +G +WL+EL+WREFY+H++ + Sbjct: 239 LNSTSQLSAYLNLGIVSIRQCLNALFRAQHGQFMIDNTGQQTWLDELLWREFYQHILFDF 298 Query: 299 PSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITA 358 P V PF T++I W L AW+QG TG PI+DA MRQL GWMHNR+RMI A Sbjct: 299 PQVSKHLPFKANTQRIVWRDSPEDLNAWQQGRTGIPIVDAGMRQLLATGWMHNRVRMIVA 358 Query: 359 SFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRF 418 FL K+LL+DWR+GE++FM L DGDLA+NNGGWQW ASTG D+VPYFR+FNP Q ++F Sbjct: 359 MFLTKNLLIDWRLGEQWFMQHLADGDLAANNGGWQWCASTGTDAVPYFRVFNPVSQSQKF 418 Query: 419 DPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYY 475 D G +IR WLPEL ++ + IH P++ + ++ L+YP PIVD K + + + Sbjct: 419 DSNGDYIRQWLPELAHLDAKSIHEPYA--KQQNMELDYPQPIVDLKSSRVRAIEAFK 473 >gi|332529962|ref|ZP_08405912.1| deoxyribodipyrimidine photolyase [Hylemonella gracilis ATCC 19624] gi|332040435|gb|EGI76811.1| deoxyribodipyrimidine photolyase [Hylemonella gracilis ATCC 19624] Length = 501 Score = 435 bits (1119), Expect = e-120, Method: Composition-based stats. Identities = 190/474 (40%), Positives = 265/474 (55%), Gaps = 9/474 (1%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 LVWLRNDLR+ DN AL+AA VIAV++ + I+ + F L + Sbjct: 2 TALVWLRNDLRLHDNPALHAAAELRQG-VIAVYVHCDAYVTRFPIAPSRLDFARRHLHLL 60 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128 L++ I Q + + + L ++ F+N +Y ++E+ RD+ + + L+ Sbjct: 61 TTELARHHIALQVLRVAQVSEIAPALARLARDHGISHCFFNAEYPLDELNRDQQVNQLLR 120 Query: 129 -HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187 V K D V++PPG + N A YKV+TP+++ +Q LR + PA + P Sbjct: 121 AQGVTVKRCHDRVVIPPGKVRNEAGTPYKVFTPYKRKWLQLASLLPLRPVEAPAHQAALP 180 Query: 188 VTPSNI----PRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS 243 ++ F + + +P GE A L++F + + +Y QRD+PA+ GTS Sbjct: 181 CPSASAQDIDHLFEGQELRDLSTPWPAGEAVARARLQRFVAQDLDHYQTQRDLPAVAGTS 240 Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCM 303 LSPYL+IG LSPRQ + +G +W++ELIWREFY+HL+ YP VCM Sbjct: 241 GLSPYLAIGALSPRQALAAVLSR-TGGDWNANAGVSTWISELIWREFYQHLVVDYPQVCM 299 Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363 + TE W + W+QG TG PIIDAAMRQLN GWMHNRLRM+ A FL K Sbjct: 300 HRAMQVHTEAFPWRQAPEDFALWRQGRTGIPIIDAAMRQLNATGWMHNRLRMLVAMFLTK 359 Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423 +L +DWR GE YFM QL+DGD A+NNGGWQW+ASTG D+ PYFRIFNP Q +RFDP+G Sbjct: 360 NLQIDWRWGERYFMEQLIDGDFAANNGGWQWSASTGTDAAPYFRIFNPITQSQRFDPRGQ 419 Query: 424 FIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477 FIR W+PEL + + IHAPH L + YP P+VD + T+ + + Sbjct: 420 FIRLWVPELAGLSDKAIHAPH--LAPSGPPPGYPAPMVDLGASRKATIALFASL 471 >gi|241204354|ref|YP_002975450.1| deoxyribodipyrimidine photo-lyase [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240858244|gb|ACS55911.1| Deoxyribodipyrimidine photo-lyase [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 482 Score = 435 bits (1118), Expect = e-120, Method: Composition-based stats. Identities = 165/491 (33%), Positives = 259/491 (52%), Gaps = 22/491 (4%) Query: 3 ATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIY 62 A A ++W R DLR+ DN+AL AA H S +I ++I P + A Q+ +++ Sbjct: 2 AKDAAKPVILWFRKDLRLDDNQALTAA-HRSGRPIIPLYIREPAAAGTGPLGAAQAWWLH 60 Query: 63 ASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKL 122 SL + +SL + +++E L ++ + +F+NR+Y+ + D Sbjct: 61 HSLEALNRSLQKLNGRLVLASG----EALEVLCAFIKESAAEAVFWNRRYDPAGISIDAR 116 Query: 123 LEKRL-QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPA 181 ++ L + + +SF +L P ++ Y+VYTPF +AL P Sbjct: 117 IKHELEKQAIEARSFGGQLLHEPSRLMTGNGTPYRVYTPFWRALEGGGEPEPPLDAPAKL 176 Query: 182 IRLTGPVT-----PSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDI 236 + P + +P D+ +D ++ GE+ A L F ++ + Y E RD Sbjct: 177 RLASQPKSEVLGSWKLLPTKPDWAGDFVD-LWTPGEEGAQQRLHVFVEDALEGYKENRDY 235 Query: 237 PAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMA 296 PA TS LSP+L++G +SP + W+ + + P + + E+ WREF HL+ Sbjct: 236 PARPATSMLSPHLALGEISPARIWDATRGLSQRV---PAADIVHFREEIAWREFSYHLLF 292 Query: 297 FYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMI 356 +P + + + EW +S +AW++G TG+PI+DA MRQL GWMHNR+RMI Sbjct: 293 HFPRLASAN-WNDRFDGFEWRNNSGDFEAWRRGMTGYPIVDAGMRQLWRHGWMHNRVRMI 351 Query: 357 TASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGK 416 ASFL+KDL++DWR GE +F L+D D A+N WQW A +G D+ P+FRIFNP +QG+ Sbjct: 352 VASFLIKDLMIDWRRGEAWFRDTLVDADPANNAASWQWVAGSGADASPFFRIFNPVLQGE 411 Query: 417 RFDPQGTFIRHWLPELNNVPTQYIH----APHSWLDKNDLSLN--YPLPIVDHKKACHHT 470 +FDP G ++R ++PEL + +YIH AP S LD+ ++L YP PIVDH A + Sbjct: 412 KFDPDGDYVRTYVPELRELGPKYIHRPFEAPKSMLDEAGITLGQTYPKPIVDHASARNRA 471 Query: 471 LNQYYAAKKQS 481 L Y A + + Sbjct: 472 LAAYKAIRDAA 482 >gi|163800188|ref|ZP_02194089.1| deoxyribodipyrimidine photolyase [Vibrio sp. AND4] gi|159175631|gb|EDP60425.1| deoxyribodipyrimidine photolyase [Vibrio sp. AND4] Length = 471 Score = 435 bits (1118), Expect = e-119, Method: Composition-based stats. Identities = 203/477 (42%), Positives = 278/477 (58%), Gaps = 12/477 (2%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 + LVW R DLR D+ AL AA V+A F++TPEQWR+H +S Q+ I L+ + Sbjct: 1 MILVWFRRDLRTLDHTALKAALETGQ-PVVAGFVSTPEQWREHNMSPMQADLIARRLVLL 59 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128 ++ L+ I Y + F D + + + + V + N YE+NE D+ + L Sbjct: 60 EEELTGLNIPLIYKEVPKFADVGKVIHQWAVSLNVKSVMANIHYEVNEQALDREVVNLLN 119 Query: 129 HR-VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187 + +F D + P ++LN + +KV+TPF++A + + A Sbjct: 120 ESSITFDAFHDKCVHAPTTVLNKQGEYFKVFTPFKRAWLSQFQMPKVWKPEPQAALSKEV 179 Query: 188 VTPSNIPRF-----FDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGT 242 + R+ F YP ++ + + + L LR F +E+ Y +RD PA+ GT Sbjct: 180 LQAVKADRYHVDVSFSYPRESSER-WHVSTSAILQQLRGFTRERSDAYQAERDFPAVDGT 238 Query: 243 SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVC 302 SQLSPYL+IG LSPRQC RL E + G +WL+E+IWREFY+HL+ F P + Sbjct: 239 SQLSPYLAIGALSPRQCIARLHAENPHTDL--TEGKATWLSEIIWREFYQHLLVFEPKLV 296 Query: 303 MGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLV 362 G+ FI W +KIEW+ D + W G TG+PI+DAAMRQLN GWMHNRLRMI ASFL Sbjct: 297 KGQGFIQWEDKIEWSYDEVAFERWSNGTTGYPIVDAAMRQLNQTGWMHNRLRMIVASFLT 356 Query: 363 KDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQG 422 KDL +DWR GE YFMS+L+DGD A+NNGGWQW+ASTG D PYFRIFNP QG++FD G Sbjct: 357 KDLHIDWRWGEAYFMSKLVDGDFAANNGGWQWSASTGCDGQPYFRIFNPISQGEKFDHDG 416 Query: 423 TFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479 TF+RHW+PE+ VP ++IH P W N L +Y P+VDHK TL + AK+ Sbjct: 417 TFVRHWVPEIKQVPNKFIHNPWLWSGFNLL--DYHKPMVDHKVEREITLRLFKNAKE 471 >gi|172037341|ref|YP_001803842.1| DNA photolyase [Cyanothece sp. ATCC 51142] gi|171698795|gb|ACB51776.1| DNA photolyase [Cyanothece sp. ATCC 51142] Length = 476 Score = 434 bits (1117), Expect = e-119, Method: Composition-based stats. Identities = 167/481 (34%), Positives = 251/481 (52%), Gaps = 18/481 (3%) Query: 8 SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67 ++ + W R DLR++DN L A S +K++ +F P ++ I+ + +++ L Sbjct: 3 NIIIFWHRRDLRLSDNIGLSKAYQKS-SKLVGLFCLDPNILQRDDIAPARVNYMLGCLRN 61 Query: 68 VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127 +Q+S + G Q E S +V + +N E RDK +++ L Sbjct: 62 LQESYQKLGGQLLIFQGQPTKIIPEVAKSL----KVNCVIWNNDVEPYSKERDKQVKEAL 117 Query: 128 QHRVIC-KSFDDSVLLPPGSILNH-ALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185 Q + I +++ D +L PG IL YKVYTPF ++ ++ S+ Sbjct: 118 QEKGITSETYWDQLLHAPGEILTKSNNDPYKVYTPFWRSWVKEDKANIAESIEKLDSLSD 177 Query: 186 GPVTPSNIPRFFDYPF-------QAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPA 238 + D P I + +GE A L FC +Y Y EQR+ PA Sbjct: 178 EEINTVKNIGLIDLPTAKDLGYGWDIPLLLELGETAAKEQLHYFCNSTIYSYQEQRNFPA 237 Query: 239 IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLI-KPKSGAFSWLNELIWREFYRHLMAF 297 I GTS+LSP GV+ R+ W E + + + + +W E+ WREFY+H + F Sbjct: 238 IDGTSKLSPAFKFGVIGIREVWQTTIEAYENTRSDEARENIQTWQQEIAWREFYQHCLYF 297 Query: 298 YPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMIT 357 +P + G P+ + W+ + QAW +G TG+PI+DAAMRQLN GWMHNR RMI Sbjct: 298 FPELAEG-PYREEFQDFPWDNNEDHFQAWCEGKTGYPIVDAAMRQLNETGWMHNRCRMIV 356 Query: 358 ASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKR 417 ASFL KDL+++W+ GE+YFM +L+DGDL++NNGGWQW+AS+G D P RIFNP Q ++ Sbjct: 357 ASFLTKDLMINWQWGEKYFMQKLIDGDLSANNGGWQWSASSGMDPKP-LRIFNPASQAQK 415 Query: 418 FDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477 +DP G +IR W+PE++++ T+Y+ + S YP PIVDHK +Y Sbjct: 416 YDPDGEYIRLWVPEISSLDTEYLVTGKIPPLEAH-SCGYPQPIVDHKHQQREFKERYKQI 474 Query: 478 K 478 K Sbjct: 475 K 475 >gi|302924301|ref|XP_003053859.1| predicted protein [Nectria haematococca mpVI 77-13-4] gi|256734800|gb|EEU48146.1| predicted protein [Nectria haematococca mpVI 77-13-4] Length = 597 Score = 434 bits (1117), Expect = e-119, Method: Composition-based stats. Identities = 163/486 (33%), Positives = 257/486 (52%), Gaps = 20/486 (4%) Query: 11 LVWLRNDLRITDNKALYAA---CHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67 + W + DLRI+DNKAL A + +IA+FI +P+ + H + + F+ +L Sbjct: 105 VHWFKMDLRISDNKALALASDKAKQAGVPLIAMFIVSPQDYEAHLRAPVRVDFMLRTLAV 164 Query: 68 VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKL-LEKR 126 +++ L++ I + + + + + ++ N +YE++E+RR+ + Sbjct: 165 LKEDLAKLDIPLYVETVEKRRNIPDRILELMDEWGASHMYANMEYEVDELRREAAMIRDF 224 Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 ++ ++ D+ ++PPG + A + Y VYTP+ +A + ++ + Sbjct: 225 AENGKAFEAVHDTCVVPPGKLQTGAGKQYAVYTPWYRAWVAHIHENPDLLELYDPPEKNP 284 Query: 187 PVTPSNIPRFFDYPF--------------QAIDPMFPIGEQNALHILRKFCKEKVYYYVE 232 + FD + + ++P GE A L KFC+E + Y + Sbjct: 285 ASARKTFKKLFDIDIPDAPKNKQLDTEEKKRLRSLWPCGEHEAKKRLDKFCEEMIGNYHK 344 Query: 233 QRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFV-DLLIKPKSGAFSWLNELIWREFY 291 +R+IP+ GTS LS +L+ G +S R C ++ L G +W++E+ WR+FY Sbjct: 345 KRNIPSDLGTSCLSVHLASGTISARTCVRTARDRNKTKKLNAGSEGIQTWISEVAWRDFY 404 Query: 292 RHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHN 351 +H++ +P VCM KPF P I W+ D AW +G TGFPI+DAAMRQ+ +G+MH+ Sbjct: 405 KHVLVNWPYVCMNKPFKPEYSNISWSYDEEQFAAWCEGRTGFPIVDAAMRQMKHLGYMHS 464 Query: 352 RLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNP 411 R RMI A FL KDLL+DWR GE +FM L+DGD ASNNGGW ++AS G D PYFRIFNP Sbjct: 465 RCRMIVACFLAKDLLIDWRKGERFFMESLIDGDFASNNGGWGFSASVGVDPQPYFRIFNP 524 Query: 412 TIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLN-YPLPIVDHKKACHHT 470 +Q ++FDP G +IR W+PEL + + +H P++ N YP IV+HK Sbjct: 525 LLQSEKFDPDGDYIRKWVPELKDCNKKEVHDPYNRGAGPKAKKNGYPKAIVEHKGCRERA 584 Query: 471 LNQYYA 476 L Y Sbjct: 585 LEAYKE 590 >gi|117919615|ref|YP_868807.1| deoxyribodipyrimidine photo-lyase type I [Shewanella sp. ANA-3] gi|117611947|gb|ABK47401.1| Deoxyribodipyrimidine photo-lyase type I [Shewanella sp. ANA-3] Length = 493 Score = 434 bits (1117), Expect = e-119, Method: Composition-based stats. Identities = 207/474 (43%), Positives = 276/474 (58%), Gaps = 17/474 (3%) Query: 4 TTAMSVHLVWLRNDLRITDNKALYAAC----HNSDAKVIAVFIATPEQWRQHGISARQSH 59 T A L+W R DLR+TDN+AL AAC AK+ A++IATP QW H ++ Q Sbjct: 6 TPAAKHALMWFRQDLRLTDNQALTAACDWVRQAPGAKLRAIYIATPNQWLSHDMAPIQID 65 Query: 60 FIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRR 119 FI + + + L+ GI F+ Q +F + +L SYC + V ++F R+ EINE +R Sbjct: 66 FIQRHVNLLAQGLASLGIEFELIQLDSFKEVPAFLASYCEKLGVERVFAGREPEINEQKR 125 Query: 120 DKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPV 179 D+ L + D+ LLPPG++LN + MYKV+TPF + + + + L V Sbjct: 126 DQA---CLDTGIPLVLSDEHCLLPPGTVLNLSGDMYKVFTPFSRKWREIAAKRAIFPLAV 182 Query: 180 PAIR---LTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDI 236 PA L P S RF + GE A IL F K+KV Y + RD Sbjct: 183 PAPLGPMLPEPKPISFKERFQSTSKLTSSEQWAAGEGQAKRILTAFIKQKVQDYKQDRDF 242 Query: 237 PAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMA 296 PA+ GTS +SPYL++GVLSPRQC L F D+++ S +WLNELIWREFYRHL+ Sbjct: 243 PALDGTSVISPYLALGVLSPRQCIAALLGRFPDVIVDDTSPGRTWLNELIWREFYRHLLV 302 Query: 297 FYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMI 356 +P + G F + ++W + AW +G TG+PI+DAAMRQLN GWMHNRLRM+ Sbjct: 303 AFPDLSKGHNFNRQADHVQWRNNQAEFLAWCEGKTGYPIVDAAMRQLNQTGWMHNRLRMV 362 Query: 357 TASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGK 416 ASFL K LL+DWR GE YF L+DGDLA+NNGGWQW+A G D+ PYFRIFNP Q + Sbjct: 363 VASFLTKHLLIDWRWGERYFRQHLIDGDLAANNGGWQWSAGCGCDAQPYFRIFNPISQSE 422 Query: 417 RFDPQGTFIRHWLPELNNVPTQYIHAP-----HSWLDKNDLSLN--YPLPIVDH 463 +FDP G+FIR +LPEL + + +H P S + L + YP IV+H Sbjct: 423 KFDPDGSFIRKYLPELASWGIKRLHQPNMQKTPSLFEAPMLESDSAYPCAIVEH 476 >gi|156744316|ref|YP_001434445.1| deoxyribodipyrimidine photo-lyase [Roseiflexus castenholzii DSM 13941] gi|156235644|gb|ABU60427.1| Deoxyribodipyrimidine photo-lyase [Roseiflexus castenholzii DSM 13941] Length = 487 Score = 434 bits (1117), Expect = e-119, Method: Composition-based stats. Identities = 175/486 (36%), Positives = 241/486 (49%), Gaps = 22/486 (4%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 + + W R DLR+ DN AL+ A SD +VI +FI A + F+ A+L + Sbjct: 2 IWIHWFRRDLRLHDNPALHTASIRSDGRVIPLFILDDAILHAPRTGAARIAFMIAALRDL 61 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128 +L +G + ++ + + + T + +NR Y RRD +E L+ Sbjct: 62 DANLRARGSRLVIRRGRT----LDVIRAMVQETGATGVAWNRDYTPFARRRDAQVEAALR 117 Query: 129 H-RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSL----PVPAIR 183 V +D+V+ P + + Y VYTP+R+ Q L P Sbjct: 118 DLNVETSIAEDAVVFSPDDVRTGDGRPYTVYTPYRRRWRALTEQRRAEVLRAIEPPLLRP 177 Query: 184 LTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCK----EKVYYYVEQRDIPAI 239 V +P D + P GE + L F + Y E RD+ A Sbjct: 178 APEAVADQTVPDHADLGIVVSQRIPPGGETHGAARLAAFVDLAAAHSIAGYAEGRDLLAE 237 Query: 240 QGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKS--GAFSWLNELIWREFYRHLMAF 297 TS+LSPYL G ++PRQ + ++ +W+ EL WR+FY ++ Sbjct: 238 PATSRLSPYLRFGCVAPRQALRAALRLLDIVGDDHRTVRSIETWIGELAWRDFYYQILWH 297 Query: 298 YPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMIT 357 YP V + F P + + W D L AWK+G TG+PIIDAAM QL WMHNR RMI Sbjct: 298 YPHVVR-RSFKPQYDALAWENDPALFDAWKEGRTGYPIIDAAMHQLRQEAWMHNRARMIV 356 Query: 358 ASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKR 417 ASFL KDLL+DWR GE YFM QL+DGD A+NNGGWQW+A TG D+ PYFRIFNP QG++ Sbjct: 357 ASFLTKDLLIDWRWGERYFMQQLVDGDHAANNGGWQWSAGTGTDAQPYFRIFNPVSQGQK 416 Query: 418 FDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND------LSLNYPLPIVDHKKACHHTL 471 FDP+G ++R +LPEL VP +YIHAP + + +YP PIVDH + L Sbjct: 417 FDPKGLYVRRYLPELAQVPDRYIHAPWTMPRAEQQRCGVVIGRDYPAPIVDHAERRMRAL 476 Query: 472 NQYYAA 477 Y A Sbjct: 477 ALYRAV 482 >gi|146293808|ref|YP_001184232.1| deoxyribodipyrimidine photo-lyase [Shewanella putrefaciens CN-32] gi|145565498|gb|ABP76433.1| Deoxyribodipyrimidine photo-lyase type I [Shewanella putrefaciens CN-32] Length = 493 Score = 434 bits (1117), Expect = e-119, Method: Composition-based stats. Identities = 198/491 (40%), Positives = 279/491 (56%), Gaps = 16/491 (3%) Query: 3 ATTAMSVHLVWLRNDLRITDNKALYAAC---HNSDAKVIAVFIATPEQWRQHGISARQSH 59 AT+ + L+W R DLR+ DN+AL AAC + A++IATP QW H ++ Q Sbjct: 9 ATSNVGDTLMWFRQDLRLADNQALTAACDWARAQGTALRAIYIATPIQWECHDVAPIQLD 68 Query: 60 FIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRR 119 FI + + K L GI F+ Q F D +++ YC Q +T++F + EINE R Sbjct: 69 FIERHINLLAKGLGCLGIQFELIQLERFADIPQFMLDYCQQHNITRVFAGSEPEINERVR 128 Query: 120 DKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPV 179 D+ + V D+ LL PG++LN + +MY+V+TPF + + + + L V Sbjct: 129 DQA---CIDAGVPLLLTDEHCLLAPGTVLNLSGEMYRVFTPFSRKWREIAARHAILPLGV 185 Query: 180 PAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAI 239 PA P + + + + GE A +L F ++KV Y + RD PA+ Sbjct: 186 PAPLGPVLPEPKALNLAVN---KVSSEQWGAGEGQAKRLLCDFIQQKVQDYKQDRDFPAL 242 Query: 240 QGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYP 299 GTS +SPYL+IGVLS RQC L + F ++++ S +WLNEL+WREFYRHL+ +P Sbjct: 243 DGTSCISPYLAIGVLSARQCVAALLQRFPEVIVDDTSLGRTWLNELVWREFYRHLLVAFP 302 Query: 300 SVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITAS 359 + F ++++W + +AW +G TG+PI+DAAMRQLN GWMHNRLRM+ AS Sbjct: 303 DLSKNHNFNRQADQVQWRNNIEEFKAWCEGRTGYPIVDAAMRQLNQTGWMHNRLRMVVAS 362 Query: 360 FLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFD 419 FL K LL+DWR GE YF +L+DGDLA+NNGGWQW+A G D+ PYFRIFNP Q ++FD Sbjct: 363 FLTKHLLIDWRWGERYFRQKLIDGDLAANNGGWQWSAGCGCDAQPYFRIFNPMSQSEKFD 422 Query: 420 PQGTFIRHWLPELNNVPTQYIHAPHSWLDK-------NDLSLNYPLPIVDHKKACHHTLN 472 P G+FIR +LPEL + + +H P++ YP IVDH +A L+ Sbjct: 423 PDGSFIRKYLPELASWGIKQLHQPNTAKTPLLFKQPLFAEQAAYPSAIVDHTEARVRALS 482 Query: 473 QYYAAKKQSLL 483 KK S L Sbjct: 483 VLGVLKKASAL 493 >gi|226946177|ref|YP_002801250.1| Deoxyribodipyrimidine photolyase [Azotobacter vinelandii DJ] gi|226721104|gb|ACO80275.1| Deoxyribodipyrimidine photolyase [Azotobacter vinelandii DJ] Length = 468 Score = 434 bits (1116), Expect = e-119, Method: Composition-based stats. Identities = 188/477 (39%), Positives = 277/477 (58%), Gaps = 16/477 (3%) Query: 10 HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69 L+WLR+DLR+ DN+AL AA +A+++ +P QWR H + + F +L ++ Sbjct: 3 QLIWLRSDLRVRDNRALGAAM--GAGPTLALYLLSPAQWRTHDDAPCKVDFRLRNLAELS 60 Query: 70 KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH 129 L+ G+ + +D++ L C +Q + ++ N +Y ++E RRD +E+ LQ Sbjct: 61 HGLASLGVPLLIRRVDTWDEAPALLTRLCHEQNIVRVHVNDEYGVHESRRDAAVERALQA 120 Query: 130 RVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLR----SLPVPAIRL 184 + + + D +LL P S+ + ++++ FR+A L + + P + + Sbjct: 121 QGVGLQRHLDQLLLAPDSLRTRSGGSFRLFAQFRRACHWRLAVSLPAVGGLPMAQPPLNV 180 Query: 185 TGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244 G P+ + F P +++ ++P GE A L +F + ++ Y E RD PA GTS+ Sbjct: 181 VGNAVPAALEGFATPP-ESLRRLWPAGEIAAQRRLHEFVENRLAAYAEARDFPAEPGTSR 239 Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304 LSPYL+ GVLSPRQC + + + A +W +EL+WREFY+H++A +P V MG Sbjct: 240 LSPYLAAGVLSPRQCLHAVLR----TGGFDRPEASAWFDELLWREFYKHILAGHPRVSMG 295 Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364 + TE + W L AW+QG TGFP+IDAAMRQL GWMHNRLRM+ A FL K+ Sbjct: 296 RALRTETEALPWRDAPQELAAWQQGRTGFPLIDAAMRQLLATGWMHNRLRMVVAMFLSKN 355 Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424 LL+DWR GE +FM L+DGDLA+NNGGWQW ASTG D+VPYFR+FNP Q +RFDP+G F Sbjct: 356 LLIDWRHGERWFMHHLIDGDLAANNGGWQWCASTGTDAVPYFRLFNPLAQSRRFDPEGRF 415 Query: 425 IRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481 IR WLPEL ++ + IHAP L YP PIVD + L + A +++ Sbjct: 416 IRQWLPELASLDNRDIHAPAGALRPA----GYPPPIVDLPSSRERALAAFKALRRRG 468 >gi|120598121|ref|YP_962695.1| deoxyribodipyrimidine photo-lyase [Shewanella sp. W3-18-1] gi|120558214|gb|ABM24141.1| Deoxyribodipyrimidine photo-lyase type I [Shewanella sp. W3-18-1] Length = 493 Score = 434 bits (1115), Expect = e-119, Method: Composition-based stats. Identities = 198/491 (40%), Positives = 279/491 (56%), Gaps = 16/491 (3%) Query: 3 ATTAMSVHLVWLRNDLRITDNKALYAAC---HNSDAKVIAVFIATPEQWRQHGISARQSH 59 AT+ + L+W R DLR+ DN+AL AAC + A++IATP QW H ++ Q Sbjct: 9 ATSNVGDTLMWFRQDLRLADNQALTAACDWARAQGTALRAIYIATPIQWACHDVAPIQLD 68 Query: 60 FIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRR 119 FI + + K L GI F+ Q F D +++ YC Q +T++F + EINE R Sbjct: 69 FIERHINLLAKGLGCLGIQFELIQLERFADIPQFMLDYCQQHNITRVFAGSEPEINERVR 128 Query: 120 DKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPV 179 D+ + V D+ LL PG++LN + +MY+V+TPF + + + + L V Sbjct: 129 DQA---CIDAGVPLLLTDEHCLLAPGTVLNLSGEMYRVFTPFSRKWREIAARHAILPLGV 185 Query: 180 PAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAI 239 PA P + + + + GE A +L F ++KV Y + RD PA+ Sbjct: 186 PAPLGPVLPEPKALNLAVN---KVSSEQWGAGEGQAKRLLCDFVQQKVQDYKQDRDFPAL 242 Query: 240 QGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYP 299 GTS +SPYL+IGVLS RQC L + F ++++ S +WLNEL+WREFYRHL+ +P Sbjct: 243 DGTSCISPYLAIGVLSARQCVAALLQRFPEVIVDDTSLGRTWLNELVWREFYRHLLVAFP 302 Query: 300 SVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITAS 359 + F ++++W + +AW +G TG+PI+DAAMRQLN GWMHNRLRM+ AS Sbjct: 303 DLSKNYNFNRQADQVQWRNNIEEFKAWCEGRTGYPIVDAAMRQLNQTGWMHNRLRMVVAS 362 Query: 360 FLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFD 419 FL K LL+DWR GE YF +L+DGDLA+NNGGWQW+A G D+ PYFRIFNP Q ++FD Sbjct: 363 FLTKHLLIDWRWGERYFRQKLIDGDLAANNGGWQWSAGCGCDAQPYFRIFNPMSQSEKFD 422 Query: 420 PQGTFIRHWLPELNNVPTQYIHAPHSWLDK-------NDLSLNYPLPIVDHKKACHHTLN 472 P G+FIR +LPEL + + +H P++ YP IVDH +A L+ Sbjct: 423 PDGSFIRKYLPELASWGIKQLHQPNTAKTPLLFKQPLFAEQAAYPSAIVDHTEARVRALS 482 Query: 473 QYYAAKKQSLL 483 KK S L Sbjct: 483 VLGVLKKASAL 493 >gi|319427180|gb|ADV55254.1| Deoxyribodipyrimidine photo-lyase [Shewanella putrefaciens 200] Length = 493 Score = 433 bits (1114), Expect = e-119, Method: Composition-based stats. Identities = 198/491 (40%), Positives = 279/491 (56%), Gaps = 16/491 (3%) Query: 3 ATTAMSVHLVWLRNDLRITDNKALYAAC---HNSDAKVIAVFIATPEQWRQHGISARQSH 59 AT+ + L+W R DLR+ DN+AL AAC + A++IATP QW H ++ Q Sbjct: 9 ATSNVGDTLMWFRQDLRLADNQALTAACDWARAQGTALRAIYIATPIQWACHDVAPIQLD 68 Query: 60 FIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRR 119 FI + + K L GI F+ Q F D +++ YC Q +T++F + EINE R Sbjct: 69 FIERHINLLAKGLGCLGIQFELIQLERFADIPQFMLDYCQQHNITRVFAGSEPEINERVR 128 Query: 120 DKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPV 179 D+ + V D+ LL PG++LN + +MY+V+TPF + + + + L V Sbjct: 129 DQA---CIDAGVPLLLTDEHCLLAPGTVLNLSGEMYRVFTPFSRKWREIAARHAILPLGV 185 Query: 180 PAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAI 239 PA P + + + + GE A +L F ++KV Y + RD PA+ Sbjct: 186 PAPLGPVLPEPKALNLAVN---KVSSEQWGAGEGQAKRLLCDFVQQKVQDYKQDRDFPAL 242 Query: 240 QGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYP 299 GTS +SPYL+IGVLS RQC L + F ++++ S +WLNEL+WREFYRHL+ +P Sbjct: 243 DGTSCISPYLAIGVLSARQCVAALLQRFPEVIVDDTSLGRTWLNELVWREFYRHLLVAFP 302 Query: 300 SVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITAS 359 + F ++++W + +AW +G TG+PI+DAAMRQLN GWMHNRLRM+ AS Sbjct: 303 DLSKNHNFNRQADQVQWRNNIEEFKAWCEGRTGYPIVDAAMRQLNQTGWMHNRLRMVVAS 362 Query: 360 FLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFD 419 FL K LL+DWR GE YF +L+DGDLA+NNGGWQW+A G D+ PYFRIFNP Q ++FD Sbjct: 363 FLTKHLLIDWRWGERYFRQKLIDGDLAANNGGWQWSAGCGCDAQPYFRIFNPMSQSEKFD 422 Query: 420 PQGTFIRHWLPELNNVPTQYIHAPHSWLDK-------NDLSLNYPLPIVDHKKACHHTLN 472 P G+FIR +LPEL + + +H P++ YP IVDH +A L+ Sbjct: 423 PDGSFIRKYLPELASWGIKQLHQPNTAKTPLLFKQPLFAEQAAYPSAIVDHTEARVRALS 482 Query: 473 QYYAAKKQSLL 483 KK S L Sbjct: 483 VLGVLKKASAL 493 >gi|220934567|ref|YP_002513466.1| Deoxyribodipyrimidine photo-lyase [Thioalkalivibrio sp. HL-EbGR7] gi|219995877|gb|ACL72479.1| Deoxyribodipyrimidine photo-lyase [Thioalkalivibrio sp. HL-EbGR7] Length = 483 Score = 433 bits (1114), Expect = e-119, Method: Composition-based stats. Identities = 170/482 (35%), Positives = 247/482 (51%), Gaps = 20/482 (4%) Query: 10 HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69 L+W R DLR+TDN AL A D +VI V+I PE+ +++ SL + Sbjct: 3 TLLWFRRDLRLTDNPALARALE--DGEVIPVYIHAPEEEGDWAPGGASLWWLHHSLAALG 60 Query: 70 KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH 129 + L +G+ Q + S+E L + + ++ +NR YE + RD ++++L+ Sbjct: 61 EDLRARGVDLVIRQGA----SLETLQALIRETGAQQVLWNRLYEPALIARDTGIKQQLRD 116 Query: 130 RVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVP---AIRLT 185 + I +SF+ ++L P ++ YKV+TPF KA + V D+ P +L Sbjct: 117 QGIRTQSFNAALLFEPWTVAKQDGTPYKVFTPFWKACLGLGVPVDVTPAPERIQGPAQLP 176 Query: 186 GPVTPSNIPRFFDYPFQA-IDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244 T ++ D + A ++ GE AL L +F E V Y E R+ P G+S+ Sbjct: 177 PGETLKSLGLLPDIDWAAGFTELWQPGEAGALARLAEFMDEAVADYDEMRNRPDRDGSSR 236 Query: 245 LSPYLSIGVLSPRQCWNRLK-EEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCM 303 LSPYL G + PRQ + + G S+L E+ WREF HL+ +P Sbjct: 237 LSPYLHFGEIGPRQAAAACQVAKDRHGGKAAHQGIDSFLREIGWREFAHHLLYHFPRTS- 295 Query: 304 GKPFIPWTEKIEWNK-DSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLV 362 +P P K+ W + D L+AW++G TG P++DAAMR L GWMHNR+RMI AS L Sbjct: 296 DEPLDPRFRKLPWRELDEETLRAWQRGRTGIPLVDAAMRALWATGWMHNRVRMIVASLLT 355 Query: 363 KDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQG 422 K+L W G +F L+D DLA N GWQW A G D+ PYFR+FNP +QG+RFDP G Sbjct: 356 KNLGAHWLTGARWFWDTLVDADLAGNTLGWQWTAGCGADAAPYFRVFNPVLQGERFDPNG 415 Query: 423 TFIRHWLPELNNVPTQYIHAPHSWLDK------NDLSLNYPLPIVDHKKACHHTLNQYYA 476 ++R W+PEL +P +YIH P + L NYP PIVD ++ L + Sbjct: 416 DYLRQWVPELAKLPAKYIHRPWEAPEAILKAAGVRLGGNYPRPIVDLAESRRQALEMWEV 475 Query: 477 AK 478 K Sbjct: 476 IK 477 >gi|37676017|ref|NP_936413.1| deoxyribodipyrimidine photolyase [Vibrio vulnificus YJ016] gi|37200557|dbj|BAC96383.1| deoxyribodipyrimidine photolyase [Vibrio vulnificus YJ016] Length = 471 Score = 433 bits (1113), Expect = e-119, Method: Composition-based stats. Identities = 208/476 (43%), Positives = 286/476 (60%), Gaps = 12/476 (2%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M++ LVWLR DLR DN AL A S +V+A F+ATP QWR H ++ Q+ I L Sbjct: 1 MAMKLVWLRRDLRCVDNTALNHAIATSQ-EVVACFVATPLQWRDHHMAPMQADLIARRLA 59 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 + + L+ I Y + ++ S + ++ Q V+++ NR+YE+NE RD+ L R Sbjct: 60 VLAEELNALNIPLLYDEVDDYAQSATRVANWAEQLAVSEVVLNREYEVNERVRDEQLVNR 119 Query: 127 LQH-RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185 L + +D + PG +LN +KV+TPF+KA +++ + + + Sbjct: 120 LASSEMGVLDVEDKCVQAPGCVLNKQGDYFKVFTPFKKAWLKSFIPPQIIKTSAAQPVVL 179 Query: 186 GPVTPSNIPRF---FDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGT 242 S++ F YP Q+ + + + Q LR+FC E+V Y EQRD PA GT Sbjct: 180 PEALQSSLWHEQAPFSYPRQSSE-AWSVDSQQIRETLRRFCHEEVDRYHEQRDFPATAGT 238 Query: 243 SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVC 302 S LSPYL+IG +S RQC RL + L +G WL+ELIWREFY HL+ F P + Sbjct: 239 SVLSPYLAIGAISVRQCIARLYWQQSYL----SNGREVWLSELIWREFYHHLIHFEPKLV 294 Query: 303 MGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLV 362 G+ F+ W + + W + W +G TG+PI+DAAMRQLN GWMHNRLRMI ASFL Sbjct: 295 KGQGFVEWEKHLLWPAKPDWFERWCRGETGYPIVDAAMRQLNQTGWMHNRLRMIVASFLT 354 Query: 363 KDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQG 422 KDL V+WR+GE+YFM +L+DGD A+NNGGWQW ASTG D PYFRIFNP QG++FDP G Sbjct: 355 KDLHVNWRLGEQYFMQKLVDGDFAANNGGWQWCASTGCDGQPYFRIFNPITQGEKFDPNG 414 Query: 423 TFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478 F++HWLPEL VP++++H P WL + L+YP P+VDHK+ TL+ Y AK Sbjct: 415 EFVKHWLPELAEVPSKFVHQPWKWL--GHMRLDYPAPMVDHKQEREITLSLYTQAK 468 >gi|84386253|ref|ZP_00989282.1| putative deoxyribodipyrimidine photolyase [Vibrio splendidus 12B01] gi|84379023|gb|EAP95877.1| putative deoxyribodipyrimidine photolyase [Vibrio splendidus 12B01] Length = 481 Score = 433 bits (1113), Expect = e-119, Method: Composition-based stats. Identities = 200/483 (41%), Positives = 287/483 (59%), Gaps = 23/483 (4%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 ++W+R DLRI DN AL AA N AVFI+TP+QW+QH ++ ++ IY L Q++ Sbjct: 4 ILWIRRDLRIHDNPALVAAVENG--VTTAVFISTPQQWQQHHLAPIKADLIYRHLQQLES 61 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130 L++ GI + + +FDD L Q T ++ N + E++E RDK L + Sbjct: 62 QLAEFGIDLLHLKARDFDDQAVQLTHLYKQLDATCIYANSEPEVDEQLRDKRL---IASG 118 Query: 131 VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAI-------- 182 + K D +LP GS+LN +M+KV+TPF+ A ++ + + P P Sbjct: 119 IKLKITDCDTILPLGSVLNKQGEMFKVFTPFKNAWLKEVQVKGIICSPAPVAPAKLQQTP 178 Query: 183 ---------RLTGPVTPSNIPRFFDYPFQAIDP-MFPIGEQNALHILRKFCKEKVYYYVE 232 +L+ I +D+ F +D +P+ + ++ F KV Y Sbjct: 179 LQQTQRPQSQLSDDSKALRISADYDFDFPRVDSSRWPLSQDVLESVIPNFLSNKVNDYSR 238 Query: 233 QRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYR 292 RDIP+I+GTS LSPYL+IG +SPR +L ++ DLL + AFSWLNELIWR+FY+ Sbjct: 239 LRDIPSIKGTSGLSPYLAIGAVSPRWLAIQLIQQQPDLLFDTQLPAFSWLNELIWRDFYK 298 Query: 293 HLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNR 352 HLM +P + G F ++W D+ +AW +G TG+P++DAAMRQL GWMHNR Sbjct: 299 HLMFHHPKLVKGANFQQKYNGLDWYHDNPSFKAWCEGKTGYPLVDAAMRQLVETGWMHNR 358 Query: 353 LRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPT 412 LRM+ ASFL K LL+DWR GE +FMS L+DGD ++NNGGWQWA+STG D+ PYFRIFNP Sbjct: 359 LRMVVASFLTKHLLIDWRWGERFFMSHLIDGDFSANNGGWQWASSTGCDAQPYFRIFNPI 418 Query: 413 IQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLN 472 Q ++FDP+G FIR ++PEL N+P +++H PH ++ KN + Y PIV+HK+A L Sbjct: 419 TQSEKFDPKGIFIRKYIPELQNIPDKHVHFPHDFIAKNRIDSEYWQPIVEHKEARLRALA 478 Query: 473 QYY 475 + Sbjct: 479 FFK 481 >gi|83858274|ref|ZP_00951796.1| Deoxyribodipyrimidine photolyase [Oceanicaulis alexandrii HTCC2633] gi|83853097|gb|EAP90949.1| Deoxyribodipyrimidine photolyase [Oceanicaulis alexandrii HTCC2633] Length = 480 Score = 433 bits (1113), Expect = e-119, Method: Composition-based stats. Identities = 171/486 (35%), Positives = 258/486 (53%), Gaps = 23/486 (4%) Query: 8 SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67 +VW R DLR+ DN A A + A VI V+I + +++ SL Sbjct: 6 PPVIVWFRQDLRLADNPA-LQAAAATGAPVIPVYILDDDAPGDWRPGGASRWWLHHSLAS 64 Query: 68 VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127 + L Q G + ++ E LD+ Q +F+NR YE +RD+ ++ L Sbjct: 65 LASDLQQLGGELALMKG----EAQEQLDALIEQTGADTVFWNRLYEPWARKRDEAIKSSL 120 Query: 128 QHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 + R + +SF+ S+++ P I YKV+TPF K+L + A+ P A++L Sbjct: 121 KDRGVRARSFNGSLIVEPWDIATKTGNPYKVFTPFWKSLKADHTPAEPTGRP-DALQLHA 179 Query: 187 PVTPSNIPRFFDYPFQ-----AIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQG 241 ++ P + + + GE A L +F K V Y ++RD+P G Sbjct: 180 HEGGLSLDDLDLLPTKPDWSGGLQENWTPGEAAAHGRLGQFLKAAVSDYSDRRDLPGQSG 239 Query: 242 TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSV 301 TS+LSP+L G +SPRQ W+ +K+ GA ++L+E+ WREF +L+ +P + Sbjct: 240 TSRLSPHLHFGEISPRQVWHAVKQ----SDHARTGGADTYLSEIAWREFSYNLLYHFPDL 295 Query: 302 CMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFL 361 F + EW++ L+AW++G TG+PI+DA MR+L GWMHNR+RMI ASFL Sbjct: 296 PEAN-FQSKFDAFEWDECEDKLKAWQKGQTGYPIVDAGMRELWATGWMHNRVRMIVASFL 354 Query: 362 VKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQ 421 +KDL + WR GE++F L+D DLASN WQW A +G D+ PYFR+FNP Q ++FDP+ Sbjct: 355 IKDLFIHWRRGEDWFWDTLVDADLASNAASWQWTAGSGADAAPYFRVFNPVGQSEKFDPK 414 Query: 422 GTFIRHWLPELNNVPTQYIHAPH----SWLDKNDLSLN--YPLPIVDHKKACHHTLNQYY 475 G ++R W+PEL ++P + IHAP S L + ++L YP PIVDH +A L + Sbjct: 415 GDYLRKWIPELADLPDKVIHAPWTAEKSVLSRAGVTLGETYPEPIVDHGEARKRALAAFE 474 Query: 476 AAKKQS 481 K Sbjct: 475 KIKDAG 480 >gi|114564201|ref|YP_751715.1| deoxyribodipyrimidine photo-lyase [Shewanella frigidimarina NCIMB 400] gi|114335494|gb|ABI72876.1| Deoxyribodipyrimidine photo-lyase type I [Shewanella frigidimarina NCIMB 400] Length = 477 Score = 432 bits (1112), Expect = e-119, Method: Composition-based stats. Identities = 196/482 (40%), Positives = 267/482 (55%), Gaps = 14/482 (2%) Query: 5 TAMSVHLVWLRNDLRITDNKALYAACH---NSDAKVIAVFIATPEQWRQHGISARQSHFI 61 T+M+ L+W R DLR+ DN AL AAC ++ V AV+ TP QW QH ++ Q FI Sbjct: 2 TSMN-SLMWFRQDLRVADNPALVAACEFASSNRGHVRAVYFVTPAQWAQHDVAPIQIDFI 60 Query: 62 YASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDK 121 + + ++L+ GI +FD+ L +Y Q + ++ + EINE RRD+ Sbjct: 61 QRHVNLLAQALAVLGIHLDVLHAQDFDEVQTLLAAYIAQHDIAAVYAANEPEINERRRDR 120 Query: 122 LLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPA 181 L + V D +L G + N A MYKV++PF K Q + + VPA Sbjct: 121 AL---IDSGVPLTLIDQDCVLAAGQVKNLAGDMYKVFSPFAKKWKSIAGQRAIVPVAVPA 177 Query: 182 IRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQG 241 TP+ + ++ +P GE A IL +F +V Y +RD PA++G Sbjct: 178 PIAAVLATPNEVVFNC---YKMSSEQWPAGEGAAKRILDQFLANQVADYQAERDFPALEG 234 Query: 242 TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSV 301 TS+LSP+L+IGV+S RQC + + L++ A +WLNELIWREFYRHL+ +P + Sbjct: 235 TSRLSPFLAIGVISSRQCVAAILARYPQALVEDTCPAKTWLNELIWREFYRHLLVAFPRL 294 Query: 302 CMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFL 361 M F + I W + AW G TG+PIIDAAMRQLN GWMHNRLRM+ ASFL Sbjct: 295 SMNHNFNELGDGIVWRNNLAEFTAWCDGQTGYPIIDAAMRQLNQTGWMHNRLRMVVASFL 354 Query: 362 VKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQ 421 K LLVDWR GE YF +L+DGDLA+NNGGWQW+A TG D+ PYFR+FNP Q +FDP Sbjct: 355 TKHLLVDWRWGERYFRQKLIDGDLAANNGGWQWSAGTGCDAQPYFRVFNPMTQSSKFDPD 414 Query: 422 GTFIRHWLPELNNVPTQYIHAPHSW----LDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477 +FI+ ++ EL+ IH P + L YP PIV+HK A + A Sbjct: 415 ASFIKRYVSELSAWSLADIHQPKTINVNDLFAQRQDDRYPQPIVEHKMARLRAIEVLSAL 474 Query: 478 KK 479 K+ Sbjct: 475 KR 476 >gi|148358421|ref|YP_001249628.1| deoxyribodipyrimidine photolyase [Legionella pneumophila str. Corby] gi|148280194|gb|ABQ54282.1| deoxyribodipyrimidine photolyase [Legionella pneumophila str. Corby] Length = 471 Score = 432 bits (1111), Expect = e-119, Method: Composition-based stats. Identities = 168/480 (35%), Positives = 253/480 (52%), Gaps = 19/480 (3%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M++ LVW R DLR+TDN A AC + + VI ++I + + Q+ +++ SL+ Sbjct: 1 MTIALVWFRQDLRLTDNPAFIEACSHHEI-VIPLYIYDD---KCSVLGQAQAWWLHHSLI 56 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 + KSL+Q+G+ + S E + Q V +++NR YE RDK ++ Sbjct: 57 ALGKSLNQQGLSLVLRKGSP----QEIILELVSQYGVESVYWNRCYEPPVFARDKKIKLA 112 Query: 127 LQHR-VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185 L R + +SF+ ++L P +I N +KV+TP+ K Q L L + Sbjct: 113 LGEREIKAQSFNGNLLHEPWAIKNKNGDFFKVFTPYWKQCRQIL--NIPSPLMLTKRPRG 170 Query: 186 GPVTPSNIPRFFDYPF----QAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQG 241 +T +I ++ P + GE+ A L +F + Y RD PA Sbjct: 171 IEITSDDIDKWKLLPAINWAARFSEYWTPGEKGAQKKLDEFIIHHLSGYKRDRDFPAKNA 230 Query: 242 TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSV 301 TS+LSP+L G +SP R E + +L+EL WREF +L+ +P + Sbjct: 231 TSRLSPHLHFGEISPW-VILRALELTKLEQTCDLASVEHFLSELGWREFSVYLLYHFPKL 289 Query: 302 CMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFL 361 F + W D LL W++G TG+P+IDA MR+L G+MHNR+RMI ASFL Sbjct: 290 DCEN-FRNEFDAFPWQNDEQLLTRWQKGMTGYPLIDAGMRELWATGYMHNRVRMIVASFL 348 Query: 362 VKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQ 421 KDLL+DWR+G ++F+ L+D DLA+N+ WQW A G D+ PYFRIFNP +Q ++FDP Sbjct: 349 TKDLLIDWRLGAQWFLDTLVDADLANNSASWQWVAGCGADAAPYFRIFNPVLQSQKFDPD 408 Query: 422 GTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLN--YPLPIVDHKKACHHTLNQYYAAKK 479 G +IR W+PEL + +Q IH P + + + L YP PI++H++A L+ Y KK Sbjct: 409 GVYIRQWIPELAQLNSQSIHQPWTDASASSIFLGNKYPKPIINHQEARTKALSYYQQIKK 468 >gi|116251748|ref|YP_767586.1| deoxyribodipyrimidine photo-lyase [Rhizobium leguminosarum bv. viciae 3841] gi|115256396|emb|CAK07478.1| putative deoxyribodipyrimidine photo-lyase [Rhizobium leguminosarum bv. viciae 3841] Length = 483 Score = 432 bits (1111), Expect = e-119, Method: Composition-based stats. Identities = 163/491 (33%), Positives = 258/491 (52%), Gaps = 21/491 (4%) Query: 3 ATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIY 62 A A ++W R DLR+ DN+AL AA H S +I ++I P + A Q+ +++ Sbjct: 2 AKDAAKPVILWFRKDLRLDDNQALTAA-HRSGRPIIPLYIGEPAAAGTGPLGAAQAWWLH 60 Query: 63 ASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKL 122 SL + +SL ++ +++E L ++ + +F+NR+Y+ + D Sbjct: 61 HSLEALNRSLQKRHGRLVLASG----EALEVLRAFIKESGAEAVFWNRRYDPAGISIDAR 116 Query: 123 LEKRL-QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPA 181 ++ L + + +SF +L P ++ Y+VYTPF +AL P Sbjct: 117 IKHELEKQAIEARSFGGQLLHEPSRLMTGNGTPYRVYTPFWRALEGGDEPEPPLEAPAEL 176 Query: 182 IRLTGPVTPSNIPRFFDYPFQAIDP-----MFPIGEQNALHILRKFCKEKVYYYVEQRDI 236 + T + + P + ++ GE+ A L F ++ + Y E RD Sbjct: 177 RLTSQLPTSETLESWKLLPTKPDWAGDFVDLWTPGEEGAQQRLHAFVEDALEGYKENRDY 236 Query: 237 PAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMA 296 PA TS LSP+L++G +SP + W+ + + P + + E+ WREF HL+ Sbjct: 237 PARPATSMLSPHLALGEISPARIWDATRGLSQRV---PAADIVHFRKEIAWREFSYHLLF 293 Query: 297 FYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMI 356 +P + + + +EW DS +AW++G TG+PI+DA MRQL GWMHNR+RMI Sbjct: 294 HFPRLASAN-WNDRFDGLEWCNDSDDFEAWRRGMTGYPIVDAGMRQLWRHGWMHNRVRMI 352 Query: 357 TASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGK 416 ASFL+KDL++DWR GE +F L+D D A+N WQW A +G D+ P+FRIFNP +QG+ Sbjct: 353 VASFLIKDLMIDWRRGEAWFRDTLVDADPANNAASWQWVAGSGADASPFFRIFNPVLQGE 412 Query: 417 RFDPQGTFIRHWLPELNNVPTQYIH----APHSWLDKNDLSLN--YPLPIVDHKKACHHT 470 +FDP G +++ ++PEL + +YIH AP S LD+ ++L YP PIVDH A + Sbjct: 413 KFDPNGDYVKTYVPELRELGAKYIHRPFEAPKSMLDEAGITLGQTYPRPIVDHASARNRA 472 Query: 471 LNQYYAAKKQS 481 L Y A + + Sbjct: 473 LAAYSATRDAA 483 >gi|121703429|ref|XP_001269979.1| deoxyribodipyrimidine photo-lyase Phr1, putative [Aspergillus clavatus NRRL 1] gi|119398122|gb|EAW08553.1| deoxyribodipyrimidine photo-lyase Phr1, putative [Aspergillus clavatus NRRL 1] Length = 586 Score = 432 bits (1110), Expect = e-119, Method: Composition-based stats. Identities = 172/490 (35%), Positives = 261/490 (53%), Gaps = 19/490 (3%) Query: 11 LVWLRNDLRITDNKALYAA---CHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67 + W ++DLR+ DN+AL A + +I ++I +P+ H S + +L Q Sbjct: 96 VHWFKSDLRLHDNRALQMAYQTAKEHNIPLIGLYILSPQDLTAHLSSPARVDLTLRTLDQ 155 Query: 68 VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127 +++ L++ I D + + C + V +F N +YE++E+RR+ L + Sbjct: 156 LKRDLNELDIPLYMETQETRKDIPQRIIDLCQEWGVNNIFANLEYEVDELRREAKLVRMC 215 Query: 128 QHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQAD--------LRSLP 178 I ++ D+ ++ PG++ + + Y VY+P+ +A + +L + S P Sbjct: 216 AQNGIKFETAHDACVVTPGAVASQQGKQYAVYSPWYRAWLVHLRENPDCLELSEEPGSNP 275 Query: 179 VPAIRLTGPVTPSNIP------RFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVE 232 A + + S +P R D + ++P GE AL L KF +E+V Y + Sbjct: 276 GNARKHFAKLFESEVPAAPENKRLSDEQRKYFGQLYPAGEHEALDRLEKFVEERVKDYAD 335 Query: 233 QRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYR 292 R++ Q TS LSPY + G LS R ++ L + G SW++E+ WR+FY+ Sbjct: 336 ARNMMFGQTTSILSPYFASGSLSARTAVVHARKANKGSLDRGDPGLASWISEVAWRDFYK 395 Query: 293 HLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNR 352 H++ +P +CM K F P +EW D + AW +G TGFPI+DAAMRQ+ WMHNR Sbjct: 396 HVLVHWPFICMNKCFKPEFTNLEWEYDENKFAAWCEGKTGFPIVDAAMRQMKHDAWMHNR 455 Query: 353 LRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPT 412 RMI ASFL KDLL+DWR GE YFM L+DGD ASN+GGW + +STG D PYFRIFNP Sbjct: 456 ARMIVASFLSKDLLIDWRRGERYFMEHLIDGDFASNHGGWGFGSSTGVDPQPYFRIFNPL 515 Query: 413 IQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLN-YPLPIVDHKKACHHTL 471 Q +RFDP G +IR WLPEL + +H P++ N YP PI++H K+ L Sbjct: 516 RQSERFDPDGEYIRKWLPELRGIKGSAVHEPYARGAGATAEKNGYPRPILEHSKSRAQAL 575 Query: 472 NQYYAAKKQS 481 ++ A + Sbjct: 576 ERFKRASENG 585 >gi|27367890|ref|NP_763417.1| Deoxyribodipyrimidine photolyase [Vibrio vulnificus CMCP6] gi|27359463|gb|AAO08407.1|AE016813_159 Deoxyribodipyrimidine photolyase [Vibrio vulnificus CMCP6] Length = 471 Score = 432 bits (1110), Expect = e-119, Method: Composition-based stats. Identities = 205/476 (43%), Positives = 283/476 (59%), Gaps = 12/476 (2%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M++ LVWLR DLR DN AL A S +V+A F+ATP QWR H ++ Q+ I L Sbjct: 1 MAMKLVWLRRDLRSVDNTALNHAIATSQ-EVVACFVATPLQWRDHHMAPMQADLIARRLA 59 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKL-LEK 125 + + L+ I Y + ++ S + ++ Q V+++ NR+YE+NE RD+ + + Sbjct: 60 VLAEELNALNIPLLYDEVDDYAQSATRVANWAEQLAVSEVVLNREYEVNERVRDEQLVNQ 119 Query: 126 RLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185 + +D + PG +LN +KV+TPF+KA +++ V + + Sbjct: 120 LASSEIGVLDVEDKCVQAPGCVLNKQGDYFKVFTPFKKAWLKSFVPPQIIKTSAAQPVVL 179 Query: 186 GPVTPSNIPRF---FDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGT 242 S++ F YP Q+ + + + Q LR FC E+V Y EQRD PA GT Sbjct: 180 PEALQSSLWHEQAPFSYPRQSSEE-WSVDSQQIRETLRHFCHEEVDRYHEQRDFPATAGT 238 Query: 243 SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVC 302 S LSPYL+IG +S RQC RL + L +G WL+ELIWREFY HL+ F P + Sbjct: 239 SVLSPYLAIGAISVRQCIARLYWQQSYL----SNGREVWLSELIWREFYHHLIHFEPKLV 294 Query: 303 MGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLV 362 G+ F+ W + + W W +G TG+PI+DAAMRQLN GWMHNRLRMI ASFL Sbjct: 295 KGQGFVEWEKHLLWPAKPDWFDRWCRGETGYPIVDAAMRQLNQTGWMHNRLRMIVASFLT 354 Query: 363 KDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQG 422 KDL V+WR+GE+YFM +L+DGD A+NNGGWQW ASTG D PYFRIFNP QG++FDP G Sbjct: 355 KDLHVNWRLGEQYFMQKLVDGDFAANNGGWQWCASTGCDGQPYFRIFNPITQGEKFDPNG 414 Query: 423 TFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478 F++HWLPEL VP++++H P +W + L+YP P+VDHK+ TL+ Y AK Sbjct: 415 EFVKHWLPELVEVPSKFVHQPWNW--PGHMQLDYPAPMVDHKQEREITLSLYTQAK 468 >gi|295689308|ref|YP_003593001.1| deoxyribodipyrimidine photo-lyase [Caulobacter segnis ATCC 21756] gi|295431211|gb|ADG10383.1| Deoxyribodipyrimidine photo-lyase [Caulobacter segnis ATCC 21756] Length = 481 Score = 431 bits (1109), Expect = e-119, Method: Composition-based stats. Identities = 168/482 (34%), Positives = 250/482 (51%), Gaps = 15/482 (3%) Query: 3 ATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIY 62 + + +VW R DLRI DN AL A +S V+ ++I E + A ++ Sbjct: 8 SEASPGAVIVWFRKDLRIADNPALRHAA-DSGRPVVCLYILD-ETPGVRPMGAASLWWLD 65 Query: 63 ASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKL 122 SL + + L + G + + + LD+ + T + +NR Y+ V RD Sbjct: 66 KSLKSLAQELEKLGNRLVLRKG----VAADVLDALIAETGATGVVWNRLYDKASVDRDAT 121 Query: 123 LEKRLQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPA 181 ++ RL+ + C+SF+ +L P ++ N + Q YKV+TP+ +A Q+L + P Sbjct: 122 IKARLKEAGVDCQSFNAGLLNEPWTVQNGSGQPYKVFTPYWRAARQHLDDVTVEPAPKVL 181 Query: 182 IRLTGPVTPSNIPRFFDYPFQAIDP----MFPIGEQNALHILRKFCKEKVYYYVEQRDIP 237 L V + + +P + ++ GE A L F + Y E+RDIP Sbjct: 182 RCLDKAVRSEPLAAWDLHPTRPDWSKGFDLWTPGEAGARARLDAFLSGPITGYGEKRDIP 241 Query: 238 AIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAF 297 + TS+LSP+L G + PRQ W + + P + A +L+EL WREF ++ Sbjct: 242 SAPATSRLSPHLHFGEIGPRQVWLAARNA-AEAGDIPTAEADKFLSELGWREFNHSILFH 300 Query: 298 YPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMIT 357 +P + + F P + W KD +AW +G TG+PI+DA MR+L T G+MHNR+RMI Sbjct: 301 WPQLP-ARNFKPEFDGFPWAKDHAAFEAWTRGETGYPIVDAGMRELWTTGFMHNRVRMIV 359 Query: 358 ASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKR 417 ASFL+K L++DWR GE +F L+D DLA+N G WQW A +G D+ PYFRIFNP QG++ Sbjct: 360 ASFLIKHLMIDWREGEAWFWDTLVDADLANNVGNWQWTAGSGADAAPYFRIFNPISQGEK 419 Query: 418 FDPQGTFIRHWLPELNNVPTQYIHAPHSWL--DKNDLSLNYPLPIVDHKKACHHTLNQYY 475 FDP+G ++R W+PEL VP IH P Y PIVDH KA L Y+ Sbjct: 420 FDPRGDYVRRWVPELKTVPDDVIHKPWERPLHLSPAARRIYAKPIVDHAKARERALEAYH 479 Query: 476 AA 477 + Sbjct: 480 SL 481 >gi|114046742|ref|YP_737292.1| deoxyribodipyrimidine photo-lyase type I [Shewanella sp. MR-7] gi|113888184|gb|ABI42235.1| Deoxyribodipyrimidine photo-lyase type I [Shewanella sp. MR-7] Length = 493 Score = 431 bits (1109), Expect = e-118, Method: Composition-based stats. Identities = 202/472 (42%), Positives = 276/472 (58%), Gaps = 17/472 (3%) Query: 6 AMSVHLVWLRNDLRITDNKALYAAC----HNSDAKVIAVFIATPEQWRQHGISARQSHFI 61 A L+W R DLR+TDN+AL AAC AK+ A++IATP QW H ++ Q FI Sbjct: 8 AAKHALMWFRQDLRLTDNQALTAACDWVRQAPGAKLRAIYIATPSQWLSHDMAPIQIDFI 67 Query: 62 YASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDK 121 + + + L+ GI F+ Q +F + +L SYC + V ++F R+ EINE +RD+ Sbjct: 68 QRHVNLLAQGLASLGIEFELIQLDSFKEVPAFLASYCEKLGVERVFAGREPEINEQKRDQ 127 Query: 122 LLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPA 181 L + D+ LLPPG++LN + MYKV+TPF + + + + L VPA Sbjct: 128 A---CLDAGIPLVLSDEHCLLPPGTVLNLSGDMYKVFTPFSRKWREVAAKRAILPLAVPA 184 Query: 182 IRLTGPVTPSNIPRFFDYPFQA---IDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPA 238 P I +PF + + GE A IL F ++K Y + RD PA Sbjct: 185 PLGPMLPEPKPISFKERFPFTSKLTSSEQWAAGEGQAKRILTAFIQQKAQDYKQDRDFPA 244 Query: 239 IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFY 298 ++GTS +SPYL++GVLSPRQC L F ++++ S +WLNELIWREFYRHL+ + Sbjct: 245 LEGTSVISPYLALGVLSPRQCIAALLGRFPEVIVDDTSPGRTWLNELIWREFYRHLLVAF 304 Query: 299 PSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITA 358 P + G F + ++W + AW +G TG+PI+DAAMRQLN GWMHNRLRM+ A Sbjct: 305 PDLSKGHNFNRQADHVQWRNNQAEFLAWCEGKTGYPIVDAAMRQLNQTGWMHNRLRMVVA 364 Query: 359 SFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRF 418 SFL K LL+DWR GE YF L+DGDLA+NNGGWQW+A G D+ PYFRIFNP Q ++F Sbjct: 365 SFLTKHLLIDWRWGERYFRQHLIDGDLAANNGGWQWSAGCGCDAQPYFRIFNPISQSEKF 424 Query: 419 DPQGTFIRHWLPELNNVPTQYIHAP-----HSWLDKNDLSLN--YPLPIVDH 463 DP G+FIR +LPEL + + +H P S + L + YP IV+H Sbjct: 425 DPDGSFIRKYLPELASWGIKRLHQPNMQKTPSLFEVQMLESDSAYPCAIVEH 476 >gi|75763261|ref|ZP_00743014.1| Deoxyribodipyrimidine photolyase [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|74489251|gb|EAO52714.1| Deoxyribodipyrimidine photolyase [Bacillus thuringiensis serovar israelensis ATCC 35646] Length = 478 Score = 431 bits (1109), Expect = e-118, Method: Composition-based stats. Identities = 164/487 (33%), Positives = 256/487 (52%), Gaps = 25/487 (5%) Query: 7 MSVH---LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYA 63 M++ +V + D R+ DN AL+ A + + V+ V+I I + +++ Sbjct: 1 MTMQKKIIVMFQKDFRLYDNPALFEAVQSGE--VLPVYIQD----ETFSIGSAAKWWLHH 54 Query: 64 SLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLL 123 +++ VQK L G F E + S Q +T +++N Y+ + ++ ++ + Sbjct: 55 AIIDVQKQLKALGSTFIIRNGKT----QEEILSLIEQLDITAVYWNICYDPDRLQSNQKM 110 Query: 124 EKRLQH-RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAI 182 + L+ +ICK F+ +LL P I YKV+TPF A + ++ + + Sbjct: 111 KMMLEDKGIICKEFNSHLLLEPWIIKKKDNTEYKVFTPFYNAFQKQVIPKPISKVQSIKW 170 Query: 183 --RLTGPVTPSNIPRFFDYPFQA-IDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAI 239 L ++ S + P+ + I+ ++ E+ A +KF K+ Y E RD P Sbjct: 171 GSSLPASLSVSELHLLPTIPWTSHIESIWEPTEEGAYKTFKKFFSSKLASYSEGRDFPNQ 230 Query: 240 QGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKP-KSGAFSWLNELIWREFYRHLMAFY 298 S L+PYLS G +S + ++ L + + + S++ +LIWREF +L+ Y Sbjct: 231 NAHSMLAPYLSFGQISVKLMYHYLINKSTERQCSLFEKQVNSFIRQLIWREFSYYLLYHY 290 Query: 299 PSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITA 358 P + KP E WNK+ LL+ W++G TG+P IDA MR+L G+MHNR RM A Sbjct: 291 P-FTVYKPLNKNFEHFPWNKEEELLRVWQKGETGYPFIDAGMRELWQTGFMHNRTRMAVA 349 Query: 359 SFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRF 418 SFLVK LL+ W+ G ++FM LLD D+A+N GWQW A +G D+ PYFRIFNP QG++F Sbjct: 350 SFLVKHLLIPWQEGAKWFMDTLLDADIANNTMGWQWVAGSGADASPYFRIFNPITQGEKF 409 Query: 419 DPQGTFIRHWLPELNNVPTQYIHAPHS----WLDKNDLSLN--YPLPIVDHKKACHHTLN 472 D G +IR W+PEL ++P +YIH P L K ++ L YPLP+VDHK A L Sbjct: 410 DKNGEYIRKWVPELRDIPNKYIHKPWEAPEHILQKANIELGNTYPLPVVDHKAARERALC 469 Query: 473 QYYAAKK 479 Y + K+ Sbjct: 470 AYKSMKE 476 >gi|62910844|gb|AAY21157.1| deoxyribopyrimidine photolyase [Prochloron didemni] Length = 475 Score = 431 bits (1109), Expect = e-118, Method: Composition-based stats. Identities = 168/476 (35%), Positives = 253/476 (53%), Gaps = 17/476 (3%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 L W R DLRI+DN L AA S +K++ +F P + ++ + ++ L ++++ Sbjct: 6 LFWHRRDLRISDNMGLAAARKQS-SKIVGLFCLDPNILNSNEVAPARVTYMLGCLQELKE 64 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK-RLQH 129 S S+ G + + IE + + +VT +F+++ E RD +E+ L+ Sbjct: 65 SYSKIGSQLLIVRG----EPIEAIPQLAVALQVTGVFWHKDGEPYARERDGKVEQELLKQ 120 Query: 130 RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQ------ADLRSLPVPAIR 183 + ++ D +L PP IL + + Y VYTPF K Q ++ L I+ Sbjct: 121 GIAVTNYWDQLLHPPEDILTQSGKPYTVYTPFWKNWSQKPKLEVAEKLDRIQGLTAEEIK 180 Query: 184 LTGPVTPSNIPRFFDYPFQAIDPM-FPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGT 242 + ++P D + + GE A L +F + + Y EQR+ PA++GT Sbjct: 181 IAQETGVVSLPTGKDLGYYWDGELILTPGETAAREQLEEFSERAIAQYQEQRNFPAVEGT 240 Query: 243 SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKP-KSGAFSWLNELIWREFYRHLMAFYPSV 301 S LSP L GV+ R W E + + ++ +W EL WREFY+H + +P + Sbjct: 241 SLLSPALRFGVIGIRTVWQATLEATKNSYSEEVRANIETWQKELAWREFYQHALYHFPQL 300 Query: 302 CMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFL 361 + +P+ + W+ + QAW +G TG+P++DAAMRQLN GWMHNR RMI ASFL Sbjct: 301 TV-EPYRQQFKDFPWDNNPEHFQAWCEGKTGYPMVDAAMRQLNETGWMHNRCRMIVASFL 359 Query: 362 VKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQ 421 KDL+++W+ GE+YFM +L DGDLASNNGGWQW+AS G D P RIFNP Q K+FDP+ Sbjct: 360 TKDLIINWQWGEQYFMQKLCDGDLASNNGGWQWSASCGMDPKP-LRIFNPASQAKKFDPE 418 Query: 422 GTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477 G +IR WLPEL+++ T+Y+ D +YP PIVDH +Y Sbjct: 419 GEYIRQWLPELSSIDTEYLVR-GKIPDDERERCDYPQPIVDHNLRQREFKRRYKEL 473 >gi|300957650|ref|ZP_07169842.1| FAD binding domain of DNA photolyase [Escherichia coli MS 175-1] gi|300315627|gb|EFJ65411.1| FAD binding domain of DNA photolyase [Escherichia coli MS 175-1] Length = 395 Score = 431 bits (1109), Expect = e-118, Method: Composition-based stats. Identities = 211/396 (53%), Positives = 279/396 (70%), Gaps = 5/396 (1%) Query: 85 SNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHRVICKSFDDSVLLPP 144 +F S+E + C + VT LFYN QYE+NE RD +E+ L+ V+C+ FDDSV+LPP Sbjct: 2 DDFVASVEIVKQVCAENSVTHLFYNYQYEVNERARDVEVERALR-NVVCEGFDDSVILPP 60 Query: 145 GSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAI 204 G+++ +MYKV+TPF+ A ++ L + + P +R +G + PS +YP Q+ Sbjct: 61 GAVMTGNHEMYKVFTPFKNAWLKRLREGMPECVAAPKVRSSGSIEPSPSITL-NYPRQSF 119 Query: 205 DP-MFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRL 263 D FP+ E+ A+ LR+FC+ Y +QRD PA++GTS+LS L+ G LSPRQC +RL Sbjct: 120 DTAHFPVEEKAAIAQLRQFCQNGAGEYEQQRDFPAVEGTSRLSASLATGGLSPRQCLHRL 179 Query: 264 KEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLL 323 E L WLNELIWREFYRHL+ ++PS+C +PFI WT++++W + L Sbjct: 180 LAEQPQALDGGAGSV--WLNELIWREFYRHLITYHPSLCKHRPFIAWTDRVQWQSNPAHL 237 Query: 324 QAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDG 383 QAW++G TG+PI+DAAMRQLN+ GWMHNRLRMITASFLVKDLL+DWR GE YFMSQL+DG Sbjct: 238 QAWQEGKTGYPIVDAAMRQLNSTGWMHNRLRMITASFLVKDLLIDWREGERYFMSQLIDG 297 Query: 384 DLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAP 443 DLA+NNGGWQWAASTG D+ PYFRIFNPT QG++FD +G FIR WLPEL +VP + +H P Sbjct: 298 DLAANNGGWQWAASTGTDAAPYFRIFNPTTQGEKFDHEGEFIRQWLPELRDVPGKVVHEP 357 Query: 444 HSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479 W K ++L+YP PIV+HK+A TL Y AA+K Sbjct: 358 WKWAQKAGVTLDYPQPIVEHKEARVQTLAAYEAARK 393 >gi|163793481|ref|ZP_02187456.1| Deoxyribodipyrimidine photolyase [alpha proteobacterium BAL199] gi|159181283|gb|EDP65798.1| Deoxyribodipyrimidine photolyase [alpha proteobacterium BAL199] Length = 484 Score = 431 bits (1108), Expect = e-118, Method: Composition-based stats. Identities = 166/489 (33%), Positives = 247/489 (50%), Gaps = 26/489 (5%) Query: 3 ATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIY 62 A + S L+W R DLR+ DN AL AA V+AV+I E +++ Sbjct: 7 AMSNASPTLLWFRRDLRLADNPALTAAVRRG-RPVVAVYILDDEDAGDWASGGASRWWLH 65 Query: 63 ASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKL 122 SL ++ +SL +G + + + LD + +++NR YE RD+ Sbjct: 66 HSLERLAESLRGRGSRLILRRGA----AAAVLDRLISETGAEAVYWNRCYEPWATARDQA 121 Query: 123 LEKRLQHRV-ICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLP--V 179 ++ L+ R +SF+ S+L P I + Y+V+TPF KAL DL P + Sbjct: 122 IKASLRLRGHEVRSFNASLLREPWEIASKVGGPYRVFTPFWKALRAMGDPGDLLPTPDRI 181 Query: 180 PAIRLTGPVTPSNIPRF----FDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRD 235 P + + + D+ F + + GE A L F Y ++R+ Sbjct: 182 PTLEVAPASDDIDAWALTPSKPDWAF-GLRAAWKPGEAAARQRLEAFLDGAAPEYAKRRN 240 Query: 236 IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLM 295 P GTS+LSP+L G + PRQ W+ + +L+E+ WREF HL+ Sbjct: 241 FPGTNGTSRLSPHLHFGEIGPRQIWHAASFHHTGM------ATDQFLSEIAWREFSHHLL 294 Query: 296 AFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRM 355 +P + P P +W+ D L AW+ G TG+PI+DA MR+L GWMHNR+RM Sbjct: 295 FHFPMLPTT-PLRPEFADFQWSDDPGALAAWRHGMTGYPIVDAGMRELWATGWMHNRVRM 353 Query: 356 ITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQG 415 I ASFLVKDLL+ W++G +F L+D DLASN+ WQW A G+D+ P+FR+FNP++QG Sbjct: 354 IVASFLVKDLLLPWQVGARWFWDTLVDADLASNSASWQWVAGCGSDAAPFFRVFNPSLQG 413 Query: 416 KRFDPQGTFIRHWLPELNNVPTQYIHAPHSWL------DKNDLSLNYPLPIVDHKKACHH 469 +FDPQGT++R W+PE+ +P IH P L +YPLPI+DH+ A Sbjct: 414 AKFDPQGTYVRRWVPEIAGLPDSIIHKPSDARLIDLSDAGIRLGHDYPLPIIDHRAARDR 473 Query: 470 TLNQYYAAK 478 L + + + Sbjct: 474 ALTAFRSLR 482 >gi|257059330|ref|YP_003137218.1| deoxyribodipyrimidine photo-lyase [Cyanothece sp. PCC 8802] gi|256589496|gb|ACV00383.1| Deoxyribodipyrimidine photo-lyase [Cyanothece sp. PCC 8802] Length = 481 Score = 431 bits (1108), Expect = e-118, Method: Composition-based stats. Identities = 169/478 (35%), Positives = 245/478 (51%), Gaps = 17/478 (3%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 L W R DLRI+DN L A S +KV+ +F + I+ + ++ L ++Q+ Sbjct: 6 LFWHRKDLRISDNVGLAKARQES-SKVVGIFCFDSNILERDDIAPARIAYLLGCLQELQQ 64 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130 + + G + Q + +F+N E RRD+ + + L+ + Sbjct: 65 TYQKLGSNLLFIQGEPSH----IIPQLAAVLDAEAVFWNLDVEPYSQRRDEQVIQALKEQ 120 Query: 131 VI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQ------ADLRSLPVPAIR 183 I +++ D +L PG I+ + + YKVYTPF K +L L + Sbjct: 121 GIKTQTYWDQLLHYPGEIVTKSGEPYKVYTPFWKNWELQSKDSITNNLENLEGLTQTELE 180 Query: 184 LTGPVTPSNIPRFFDYPFQAIDPM-FPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGT 242 V ++P + ++ P+ GE A L FC + Y EQR+ PAI+GT Sbjct: 181 QAKTVKIIDLPTVKELGYRWDYPLILSPGETAAAERLDYFCDAAINEYQEQRNFPAIEGT 240 Query: 243 SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKP-KSGAFSWLNELIWREFYRHLMAFYPSV 301 SQLSP L GV+ R W + + + +W EL WREFY+H + F+P + Sbjct: 241 SQLSPALKFGVIGIRTVWQATLKAMENSRSDEVRESIVTWQKELAWREFYQHCLYFFPEL 300 Query: 302 CMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFL 361 G P+ + W+ + L QAW G TG+PI+DAAMRQLN GWMHNR RMI ASFL Sbjct: 301 AEG-PYREDFQDFPWDNNEVLFQAWCDGKTGYPIVDAAMRQLNETGWMHNRCRMIVASFL 359 Query: 362 VKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQ 421 KDL+++W+ GE+YFM L+DGDLA+NNGGWQW+AS+G D P RIFNP Q ++FDP Sbjct: 360 TKDLMINWQWGEKYFMQTLIDGDLAANNGGWQWSASSGMDPKP-LRIFNPASQAQKFDPD 418 Query: 422 GTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479 +IR WLPEL ++ T+ + LS YP PIV+H + +Y K+ Sbjct: 419 ADYIRQWLPELRSLDTEVLVTGKISPLDC-LSCGYPQPIVNHNQQQREFKRRYSQVKQ 475 >gi|209965317|ref|YP_002298232.1| deoxyribodipyrimidine photolyase family protein [Rhodospirillum centenum SW] gi|209958783|gb|ACI99419.1| deoxyribodipyrimidine photolyase family protein [Rhodospirillum centenum SW] Length = 489 Score = 431 bits (1108), Expect = e-118, Method: Composition-based stats. Identities = 165/492 (33%), Positives = 240/492 (48%), Gaps = 25/492 (5%) Query: 6 AMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASL 65 + LVW R DLR+ DN AL A S V+ VF+ + +++ SL Sbjct: 2 RATPILVWFRQDLRLADNPALSDAAR-SGRPVVPVFVLDDDTPGGWRPGGASRWWLHHSL 60 Query: 66 LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125 + +SL+ G + + + + +NR YE RD L+ Sbjct: 61 ASLSRSLATAGSPLVLRRGRADV----AIGELVRETGAGTVLWNRCYEPWATERDSRLKA 116 Query: 126 RLQH-RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL 184 L+ V KSF+ S+L P ++ A + Y+V+TPF +A+ + + + P RL Sbjct: 117 DLRAAGVEVKSFNGSLLREPMTVRTAAGEPYRVFTPFWRAVSSSPDWPEPLAAPD---RL 173 Query: 185 TGPVTPSNIPRFFDYPFQAIDP--------MFPIGEQNALHILRKFCKEKVYYYVEQRDI 236 P T + P + GE LR F + Y E RD Sbjct: 174 EAPPTAPASDPLESWGLLPTTPDWAGGLRQAWQPGEAAVAARLRAFLEGAAADYAEGRDR 233 Query: 237 PAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLI-KPKSGAFSWLNELIWREFYRHLM 295 P GTS+LSPYL G +SPRQ W ++ + + + A S+L EL WREF +L+ Sbjct: 234 PGSDGTSRLSPYLHFGEISPRQVWAATRDAMLSGNPPEHRRHAESFLRELGWREFCYNLL 293 Query: 296 AFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRM 355 +P + +P P E W DS L +W++G TG+PI+DA MRQL T GWMHNR+RM Sbjct: 294 YHFPKLPE-RPLNPRFEDFPWQPDSAALDSWQRGRTGYPIVDAGMRQLWTTGWMHNRVRM 352 Query: 356 ITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQG 415 I SFLVK LL+ W+ G+ +F L+D DLA+N GWQW A G D+ PYFR+FNP +QG Sbjct: 353 IVGSFLVKHLLLPWQEGQRWFWDTLVDADLANNAAGWQWIAGCGADAAPYFRVFNPVLQG 412 Query: 416 KRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKN------DLSLNYPLPIVDHKKACHH 469 +FDP G ++R W+PEL +P IH P + + L +YP P ++HK+ Sbjct: 413 GKFDPDGRYVRRWVPELAALPDTLIHQPWTATAETLRRAGIRLGTDYPAPCIEHKRGRDR 472 Query: 470 TLNQYYAAKKQS 481 L + ++ Sbjct: 473 ALAAFATLRQAG 484 >gi|229030832|ref|ZP_04186854.1| Deoxyribodipyrimidine photolyase [Bacillus cereus AH1271] gi|228730481|gb|EEL81439.1| Deoxyribodipyrimidine photolyase [Bacillus cereus AH1271] Length = 476 Score = 430 bits (1107), Expect = e-118, Method: Composition-based stats. Identities = 161/480 (33%), Positives = 247/480 (51%), Gaps = 22/480 (4%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 +V + D R+ DN AL+ A + + V+ V++ I + +++ +++ VQK Sbjct: 6 IVMFQKDFRLYDNPALFEAVQSGE--VLPVYVQD----ETFSIGSAAKWWLHHAIIDVQK 59 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH- 129 L G + + E + S Q +T +++N Y+ ++ ++ ++ L+ Sbjct: 60 QLEALGSTLIIRKGNT----QEEILSLIEQLGITAVYWNICYDPERLQSNQKMKMMLEDK 115 Query: 130 RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPA--IRLTGP 187 +ICK F+ +LL P I YKV+TPF A + ++ + + L Sbjct: 116 GIICKEFNSHLLLEPWIIKKKDNTEYKVFTPFYNAFQKQVIPKPISKVQRIKGGNSLPAS 175 Query: 188 VTPSNIPRFFDYPFQA-IDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246 ++ S + P+ + I+ M+ E+ A +KF K+ Y E RD P S L+ Sbjct: 176 LSVSKLHLLPTIPWTSHIESMWEPTEEGAYKTCKKFFSSKLASYSEGRDFPNENAHSMLA 235 Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKP-KSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305 PYLS G +S R ++ L + + + S++ + IWREF +L+ YP + K Sbjct: 236 PYLSFGQISVRWMYHYLINKSTERQCSLFEKQVNSFIRQFIWREFSYYLLYHYP-FTVYK 294 Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365 P E WN + LL W++G TG+P IDA MR+L G+MHNR RM ASFLVK L Sbjct: 295 PLNKSFEHFPWNNEEELLTVWQKGDTGYPFIDAGMRELWQTGFMHNRARMAVASFLVKHL 354 Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425 L+ W+ G ++FM LLD D+A+N GWQW A +G D+ PYFRIFNP QG++FD G +I Sbjct: 355 LIPWQEGAKWFMDTLLDADIANNTMGWQWVAGSGADASPYFRIFNPITQGEKFDKDGEYI 414 Query: 426 RHWLPELNNVPTQYIHAPHSWLDK------NDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479 R W+PEL ++P +YIH P + L YPLPIVDHK A L Y + KK Sbjct: 415 RKWVPELRDMPNKYIHKPWEAPEHILQEANIQLGHTYPLPIVDHKAARERALCAYKSMKK 474 >gi|226315066|ref|YP_002774962.1| deoxyribodipyrimidine photolyase [Brevibacillus brevis NBRC 100599] gi|226098016|dbj|BAH46458.1| deoxyribodipyrimidine photolyase [Brevibacillus brevis NBRC 100599] Length = 484 Score = 430 bits (1107), Expect = e-118, Method: Composition-based stats. Identities = 174/484 (35%), Positives = 251/484 (51%), Gaps = 18/484 (3%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 +VW R DLR+ D+ AL+AA D +I V+I + ++ H ++++ + Sbjct: 2 TAIVWFRRDLRLHDHAALHAAMLTGD-PIIPVYIVEDSLCLSAAVGDKRLHAHFSAIAAL 60 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL- 127 +L Q G + + + L + KLF+NR Y + +RD+L+ + L Sbjct: 61 DDALVQLGGRLLIRRG----EPQQVLCQLAQETGAEKLFFNRDYTPDARKRDELVSEVLS 116 Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRS-----LPVPAI 182 +H V + D VL PG I+ Y V+TP+R+ L Sbjct: 117 RHGVFVHACKDLVLHEPGEIMTKQRTPYAVFTPYRRVWQTLPKDRPFPQPTEWILFDRLK 176 Query: 183 RLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGT 242 L P+ + P M GE+ A L++F +Y Y E+RD+P + T Sbjct: 177 ELPSEPVPTVEAFGRNRPMGTEWEMEQFGERAARKRLQQFLDRDIYTYKEKRDMPGVNAT 236 Query: 243 SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVC 302 S+LS L+ G LS R ++R++E + + ++L ELIWREFY+ ++ F+P Sbjct: 237 SRLSFALNAGTLSIRTVYHRVQEVLASARGEQVTSIEAFLTELIWREFYQQVLYFHPH-T 295 Query: 303 MGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLV 362 ++P E++ W L W QG TG+PI+DAAM+QLN GWMHNRLRMITASFL Sbjct: 296 TNHAYLPQFEEVAWENKKDLFVRWCQGETGYPIVDAAMKQLNETGWMHNRLRMITASFLT 355 Query: 363 KDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQG 422 KDLLVDWR G YF QL+D D A+N GGWQW+ASTG D+ PYFRIFNP QG++FD G Sbjct: 356 KDLLVDWRWGMAYFAQQLIDFDEAANIGGWQWSASTGTDAQPYFRIFNPVTQGEKFDRDG 415 Query: 423 TFIRHWLPELNNVPTQYIHAPHSWLD------KNDLSLNYPLPIVDHKKACHHTLNQYYA 476 F++ +LP L VP QYIH P + + +YPLP VDH + + + Sbjct: 416 VFVKKYLPVLREVPLQYIHKPWDMPEHIQEQAGCKIGFDYPLPCVDHAQRRKLAMALFQE 475 Query: 477 AKKQ 480 AK + Sbjct: 476 AKDR 479 >gi|113969509|ref|YP_733302.1| deoxyribodipyrimidine photo-lyase type I [Shewanella sp. MR-4] gi|113884193|gb|ABI38245.1| Deoxyribodipyrimidine photo-lyase type I [Shewanella sp. MR-4] Length = 493 Score = 430 bits (1107), Expect = e-118, Method: Composition-based stats. Identities = 202/472 (42%), Positives = 276/472 (58%), Gaps = 17/472 (3%) Query: 6 AMSVHLVWLRNDLRITDNKALYAAC----HNSDAKVIAVFIATPEQWRQHGISARQSHFI 61 A L+W R DLR+TDN+AL AAC AK+ A++IATP QW H ++ Q FI Sbjct: 8 AAKHTLMWFRQDLRLTDNQALTAACDWVRQVPGAKLRAIYIATPSQWLSHDMAPIQIDFI 67 Query: 62 YASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDK 121 + + + L+ GI F+ Q +F + +L SYC + V ++F R+ EINE +RD+ Sbjct: 68 QRHVNLLAQGLASLGIEFELIQLDSFKEVPAFLASYCEKLGVERVFAGREPEINEQKRDQ 127 Query: 122 LLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPA 181 L + D+ LLPPG++LN + MYKV+TPF + + + + L VPA Sbjct: 128 A---CLDVGIPLVLSDEHCLLPPGTVLNLSGDMYKVFTPFSRKWREVAAKRAILPLAVPA 184 Query: 182 IRLTGPVTPSNIPRFFDYPFQA---IDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPA 238 P I +PF + + GE A IL F ++K Y + RD PA Sbjct: 185 PLGPMLPEPKPISFKERFPFTSKLTSSEQWAAGEGQAKRILTAFIQQKAQDYKQDRDFPA 244 Query: 239 IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFY 298 ++GTS +SPYL++GVLSPRQC L F ++++ S +WLNELIWREFYRHL+ + Sbjct: 245 LEGTSVISPYLALGVLSPRQCIAALLGRFPEVIVDDTSPGRTWLNELIWREFYRHLLVAF 304 Query: 299 PSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITA 358 P + G F + ++W + AW +G TG+PI+DAAMRQLN GWMHNRLRM+ A Sbjct: 305 PDLSKGHNFNRQADHVQWRNNQAEFLAWCEGKTGYPIVDAAMRQLNQTGWMHNRLRMVVA 364 Query: 359 SFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRF 418 SFL K LL+DWR GE YF L+DGDLA+NNGGWQW+A G D+ PYFRIFNP Q ++F Sbjct: 365 SFLTKHLLIDWRWGERYFRQHLIDGDLAANNGGWQWSAGCGCDAQPYFRIFNPISQSEKF 424 Query: 419 DPQGTFIRHWLPELNNVPTQYIHAP-----HSWLDKNDLSLN--YPLPIVDH 463 DP G+FIR +LPEL + + +H P S + L + YP IV+H Sbjct: 425 DPDGSFIRKYLPELASWGIKRLHQPNMQKTPSLFEVPTLESDSAYPYAIVEH 476 >gi|85115208|ref|XP_964834.1| hypothetical protein NCU08626 [Neurospora crassa OR74A] gi|130155|sp|P27526|PHR_NEUCR RecName: Full=Deoxyribodipyrimidine photo-lyase; AltName: Full=DNA photolyase; AltName: Full=Photoreactivating enzyme gi|3054|emb|CAA41549.1| deoxyribodipyrimidine photolyase [Neurospora crassa] gi|28926629|gb|EAA35598.1| hypothetical protein NCU08626 [Neurospora crassa OR74A] Length = 642 Score = 430 bits (1107), Expect = e-118, Method: Composition-based stats. Identities = 175/498 (35%), Positives = 254/498 (51%), Gaps = 33/498 (6%) Query: 11 LVWLRNDLRITDNKALYAACH---NSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67 + W + DLR+ DN++L+ A + +I +++ +PE H + + F+ +L Sbjct: 138 VHWFKMDLRLHDNRSLWLASQKAKEAGVPLICLYVLSPEDLEAHLRAPIRVDFMLRTLEV 197 Query: 68 VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127 ++ L GI + + + LF +YE++E+RR+ L K L Sbjct: 198 LKTDLEDLGIPLWVETVEKRKEVPTKIKELMKSWGASHLFCAMEYEVDELRREAKLVKLL 257 Query: 128 QHR-----VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAI 182 + D+ ++ PG++ + + Y VY+P+ +A I+++ + Sbjct: 258 AEGEKGEKMAADVVHDTCVVMPGALQSGSGGQYAVYSPWFRAWIKHIEENPECLEIYEKP 317 Query: 183 RLTGPVTPSNIPRFF--------------DYPFQAIDPMFPIGEQNALHILRKFCKEKVY 228 P T F D ++P GE AL L KFC E + Sbjct: 318 GPNPPGTKEKHENLFACSIPEAPEGKRLRDDEKARYHSLWPAGEHEALKRLEKFCDEAIG 377 Query: 229 YYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFV-DLLIKPKSGAFSWLNELIW 287 Y E+R+IPA+QGTS LS + + G LS R ++ L G W++E+ W Sbjct: 378 KYAERRNIPAMQGTSNLSVHFASGTLSARTAIRTARDRNNTKKLNGGNEGIQRWISEVAW 437 Query: 288 REFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIG 347 R+FY+H++ +P VCM KPF P IEW+ + AW QG TGFPIIDAAMRQ+ + G Sbjct: 438 RDFYKHVLVHWPYVCMNKPFKPTYSNIEWSYNVDHFHAWTQGRTGFPIIDAAMRQVLSTG 497 Query: 348 WMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFR 407 +MHNRLRMI ASFL KDLLVDWR+GE YFM L+DGD ASNNGGW +AAS G D PYFR Sbjct: 498 YMHNRLRMIVASFLAKDLLVDWRMGERYFMEHLIDGDFASNNGGWGFAASVGVDPQPYFR 557 Query: 408 IFNPTIQGKRFDPQGTFIRHWLPELNNVP------TQYIHAPHS----WLDKNDLSLNYP 457 +FNP +Q ++FDP G +IR W+ EL ++P IH P+ + K YP Sbjct: 558 VFNPLLQSEKFDPDGDYIRKWVEELRDLPELKGGKGGEIHDPYGRGSEKVKKKLEEKGYP 617 Query: 458 LPIVDHKKACHHTLNQYY 475 PIV+H A L+ Y Sbjct: 618 RPIVEHSGARDRALDAYK 635 >gi|163849034|ref|YP_001637078.1| deoxyribodipyrimidine photo-lyase [Chloroflexus aurantiacus J-10-fl] gi|222527000|ref|YP_002571471.1| deoxyribodipyrimidine photo-lyase [Chloroflexus sp. Y-400-fl] gi|163670323|gb|ABY36689.1| Deoxyribodipyrimidine photo-lyase [Chloroflexus aurantiacus J-10-fl] gi|222450879|gb|ACM55145.1| Deoxyribodipyrimidine photo-lyase [Chloroflexus sp. Y-400-fl] Length = 479 Score = 430 bits (1106), Expect = e-118, Method: Composition-based stats. Identities = 184/482 (38%), Positives = 251/482 (52%), Gaps = 20/482 (4%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 +++ W R DLR+ DN AL AA + V+ VFI R S ++ F+ L + Sbjct: 1 MYIHWFRRDLRLRDNTALMAAATAAGGAVVPVFIFDDAILRGRFASPARTQFLLDCLAAL 60 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128 L G+ + + L + + + +NR Y VRRD +++ L+ Sbjct: 61 DAELRTFGLHLVVRRGDPLRTLFDVL----RESGASGVTWNRDYTPYAVRRDTAIKQALR 116 Query: 129 HRV-ICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187 SF D+V+ + + Y VYTP+ K L + +P + Sbjct: 117 EAGYEAHSFKDTVIFEMKEVATADGRPYTVYTPYAKRWRSRLAAEPVTVQDMPRLATIPL 176 Query: 188 VTPSNIPRFFDY--PFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245 +P D A P FP GE AL L +F + + Y + RD+ A+ GTS+L Sbjct: 177 PVSEPLPHLTDLLPDAPATLPRFPAGEAVALEALERFVRGPLASYAQGRDLMAVAGTSRL 236 Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305 SPYL +GVLSPRQC + SW+ ELIWR+FY ++ +P G Sbjct: 237 SPYLRLGVLSPRQCVAAALAAPPGPGPE------SWIGELIWRDFYVQVLYHFPHALRG- 289 Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365 F P +I+W D L AW+QG TG+PI+DAAMRQL GWMHNR RMI ASFL KDL Sbjct: 290 SFKPAYNRIDWPNDPVLFAAWQQGLTGYPIVDAAMRQLQREGWMHNRARMIVASFLTKDL 349 Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425 L+DWR GE +FM L+DGD A+NNGGWQWAA TG D+ P+FRIFNP QG++FDP+G ++ Sbjct: 350 LIDWRWGERHFMHLLIDGDPAANNGGWQWAAGTGTDAQPFFRIFNPVSQGQKFDPEGAYV 409 Query: 426 RHWLPELNNVPTQYIHAPHSWLDKND------LSLNYPLPIVDHKKACHHTLNQYYAAKK 479 R ++PEL NVPT+YIH PH + +YP PIVDH L Y AA + Sbjct: 410 RRYVPELVNVPTRYIHEPHKMSLAEQRKAGVLIGRDYPAPIVDHATQRTKALELYRAATR 469 Query: 480 QS 481 + Sbjct: 470 HN 471 >gi|228915743|ref|ZP_04079325.1| Deoxyribodipyrimidine photolyase [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228843918|gb|EEM88985.1| Deoxyribodipyrimidine photolyase [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] Length = 476 Score = 430 bits (1106), Expect = e-118, Method: Composition-based stats. Identities = 155/480 (32%), Positives = 252/480 (52%), Gaps = 22/480 (4%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 +V + D R+ DN AL+ A + + V+ +++ I + +++ +++ V++ Sbjct: 6 IVMFQKDFRLYDNPALFEAAQSGE--VLPLYVYD----ETFSIGSASKWWLHHTIIDVKR 59 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130 L G + + +E + S Q +T +++N Y+ ++ ++ ++ L+ + Sbjct: 60 QLETLGSTLIIRKGNT----LEEILSLIKQLGITAVYWNICYDPERLQFNQKMKMMLEDK 115 Query: 131 VI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAI--RLTGP 187 I CK F+ +LL P I YKV+TPF A + ++ + + L Sbjct: 116 GITCKEFNSHLLLEPWIIKKKDNTEYKVFTPFYNAFQKQVISKPISKVQSIKWGSSLPAS 175 Query: 188 VTPSNIPRFFDYPFQA-IDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246 ++ S + P+ + ++ ++ E+ A +KF K+ Y E RD P S L+ Sbjct: 176 LSVSELHLLPTIPWTSHMESIWEPTEEGAYKTFKKFFSSKLVSYSEGRDFPNQNAHSMLA 235 Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKP-KSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305 PYLS G +S + ++ L + + + S++ + IWREF +L+ YP + K Sbjct: 236 PYLSFGQISVKLIYHYLINKSNEKQCSLFEQQVNSFIRQFIWREFSYYLLYHYP-FTVNK 294 Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365 P E WN + LL+ W++G TG+P IDA MR+L G+MHNR RM ASFLVK L Sbjct: 295 PLNKNFEHFPWNNEEELLRVWQKGETGYPFIDAGMRELWQTGFMHNRARMAVASFLVKHL 354 Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425 L+ W+ G ++FM LLD D+A+N GWQW A +G D+ PYFRIFNP QG++FD G +I Sbjct: 355 LIPWQEGAKWFMDTLLDADIANNTMGWQWVAGSGADASPYFRIFNPITQGEKFDKDGEYI 414 Query: 426 RHWLPELNNVPTQYIHAPHS----WLDKNDLSLN--YPLPIVDHKKACHHTLNQYYAAKK 479 R W+PEL ++P +YIH P L K ++ L YPLP+VDHK A L Y + K+ Sbjct: 415 RKWVPELRDMPNKYIHKPWEAPEHILQKANIKLGDTYPLPVVDHKAARERALCAYKSMKE 474 >gi|46446306|ref|YP_007671.1| putative photolyase [Candidatus Protochlamydia amoebophila UWE25] gi|46399947|emb|CAF23396.1| putative photolyase [Candidatus Protochlamydia amoebophila UWE25] Length = 471 Score = 430 bits (1106), Expect = e-118, Method: Composition-based stats. Identities = 165/480 (34%), Positives = 255/480 (53%), Gaps = 27/480 (5%) Query: 8 SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVF--IATPEQWRQHGISARQSHFIYASL 65 + +VW R D R+ DN AL AA VI VF + PE ++ + ++Y SL Sbjct: 3 NPSIVWFRQDFRLEDNPALNAATQKG-GPVIPVFNWVFNPE--KEWQLGGASQWWLYYSL 59 Query: 66 LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125 + ++ LS+ G+ + +D ++ L + +++NR+YE ++ D ++ Sbjct: 60 ISLKNDLSELGLSLIIRK----EDPLKSLLEIAHETGADTVYWNRRYEPMLIQDDAKIKT 115 Query: 126 RLQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL 184 LQ + I SF+ ++L P +I N + ++V+TPF ++ +P + Sbjct: 116 ELQKQGIKAHSFNGNLLFEPWTIANKQGKPFQVFTPFWNQCLKLNDPEVPLPVPHSLKKF 175 Query: 185 TGPVTPSNIPRFFDYPF----QAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ 240 G + +I P + + ++ G ++A +L+K + Y++ RD+P Sbjct: 176 VGQLQTESIDSLNLLPKIKWDKGLKEVWSPGAKSAKALLKKGLTGVIDQYLDIRDLPDHD 235 Query: 241 GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPS 300 GTS LSPYL G +SPR W +KE GA +L ++ WREF HL+ +P Sbjct: 236 GTSLLSPYLHFGEISPRMIWQAVKENST------SKGAEGYLRQIGWREFAHHLLYHFPE 289 Query: 301 VCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASF 360 KP W D L+AW++G TG+PIIDA MRQL IGWMHNR+R+I SF Sbjct: 290 TP-QKPLRSQFNSFSWKNDKQNLKAWQKGQTGYPIIDAGMRQLWKIGWMHNRVRLIVGSF 348 Query: 361 LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDP 420 LVKDL++ W G ++F L+D DLA+N GWQW A G D+ PYFRIFNP QG++FDP Sbjct: 349 LVKDLMIHWIEGAKWFWDTLVDADLANNTMGWQWIAGCGADAAPYFRIFNPITQGEKFDP 408 Query: 421 QGTFIRHWLPELNNVPTQYIHAPHSWLDK------NDLSLNYPLPIVDHKKACHHTLNQY 474 +G +++ W+PEL N+P +++H P ++ +L +NYP PIV+H KA L Y Sbjct: 409 EGNYVKKWVPELINLPKEWLHQPWEAPEEILRQSGIELGINYPKPIVNHAKAREEALQAY 468 >gi|320158160|ref|YP_004190538.1| deoxyribodipyrimidine photolyase [Vibrio vulnificus MO6-24/O] gi|319933472|gb|ADV88335.1| deoxyribodipyrimidine photolyase [Vibrio vulnificus MO6-24/O] Length = 469 Score = 430 bits (1105), Expect = e-118, Method: Composition-based stats. Identities = 205/474 (43%), Positives = 286/474 (60%), Gaps = 12/474 (2%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 + LVWLR DLR DN AL A S +V+A F+ATP QWR H ++ Q+ I L + Sbjct: 1 MKLVWLRRDLRSVDNTALNHAIATSQ-EVVACFVATPLQWRDHHMAPMQADLIARRLAVL 59 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKL-LEKRL 127 + L+ I Y + ++ S + ++ Q V+++ +NR+YE+NE RD+ + + Sbjct: 60 AEELNALNIPLLYDEVDDYAQSATRVANWAEQLAVSEVVFNREYEVNERVRDEQLINQLA 119 Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADL-RSLPVPAIRLTG 186 + +D + PG +LN +KV+TPF+KA +++ V + ++ + L Sbjct: 120 SSEMGVLDVEDKCVQAPGCVLNKQGDYFKVFTPFKKAWLKSFVPPQIIKTSAAQPVVLPE 179 Query: 187 PVTPSNIPRF--FDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244 + PS F YP ++ + + + Q LR FC E+V Y EQRD PA GTS Sbjct: 180 ALQPSLWHEQAPFSYPRESSE-AWSVDSQQIRETLRHFCHEEVDRYHEQRDFPATAGTSV 238 Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304 LSPYL+IG +S RQC RL + L +G WL+ELIWREFY HL+ F P + G Sbjct: 239 LSPYLAIGAISVRQCIARLYWQQSYL----SNGREVWLSELIWREFYHHLIHFEPKLVKG 294 Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364 + F+ W + + W + W +G TG+PI+DAAMRQLN GWMHNRLRMI ASFL KD Sbjct: 295 QGFVEWEKHLLWPAKPDWFERWCRGETGYPIVDAAMRQLNQTGWMHNRLRMIVASFLTKD 354 Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424 L V+WR+GE+YFM +L+DGD A+NNGGWQW ASTG D PYFRIFNP QG++FDP G F Sbjct: 355 LHVNWRLGEQYFMQKLVDGDFAANNGGWQWCASTGCDGQPYFRIFNPITQGEKFDPNGEF 414 Query: 425 IRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478 ++HWLPEL VP++++H P +W + L+YP P+VDHK+ TL+ Y AK Sbjct: 415 VKHWLPELAQVPSKFVHQPWNW--PGHMQLDYPAPMVDHKQEREITLSLYTQAK 466 >gi|312211251|emb|CBX91336.1| hypothetical protein [Leptosphaeria maculans] Length = 811 Score = 430 bits (1105), Expect = e-118, Method: Composition-based stats. Identities = 176/494 (35%), Positives = 258/494 (52%), Gaps = 22/494 (4%) Query: 5 TAMSVHLVWLRNDLRITDNKALYAA---CHNSDAKVIAVFIATPEQWRQHGISARQSHFI 61 T+ + W + DLR+ DN L A ++ VI V+I +P+ W H +S + F Sbjct: 311 TSGDAVIHWFKRDLRLRDNTGLSKAYELAKENNIGVIGVWIMSPQDWEAHLVSPAKCDFE 370 Query: 62 YASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD- 120 S+ + K L++ I S + + + V ++ N +YE +E+RR+ Sbjct: 371 LRSVEALSKELNELDIPLHIETVSRRKEVAYRMVELAQEWNVKNVYCNLEYEPDELRREE 430 Query: 121 KLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQAD------- 173 +L+ LQ + D ++PPGS+ + Y VY+P+ ++ + +L Sbjct: 431 RLVRLMLQKGINFDPQHDDCVVPPGSLKTGGGKQYAVYSPWFRSWLAHLHAHPHLLNERT 490 Query: 174 -LRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDP------MFPIGEQNALHILRKFCKEK 226 P + S IP + D ++P GE A+ LR+F EK Sbjct: 491 MPEKNPSGFRERFAKLFDSTIPELPESKSLTEDQRKQFHHLWPAGEAAAIERLRRFLTEK 550 Query: 227 VYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFV-DLLIKPKSGAFSWLNEL 285 V Y + R+ P + T ++S + + G L+ R ++ L K G W++E+ Sbjct: 551 VAKYNDTRNFPNLNSTGRVSAHHAAGTLAARTSVRLARDMNTSKKLDGGKDGIKVWISEV 610 Query: 286 IWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNT 345 WR+FYRH++ +P VCM KPF IEW + ++W QG TG+PI+DAAMR LN Sbjct: 611 AWRDFYRHVLVHWPYVCMNKPFKYEYTNIEWEYNDPHFRSWTQGKTGYPIVDAAMRSLNQ 670 Query: 346 IGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPY 405 +MHNRLRMITASFL K LL+DWR+GE+YF+S L+DGD ASNNGGW ++ASTG D PY Sbjct: 671 TAYMHNRLRMITASFLAKHLLLDWRLGEQYFISHLIDGDFASNNGGWGFSASTGVDPQPY 730 Query: 406 FRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDL---SLNYPLPIVD 462 FRIFNP +Q ++FD +G FIR W+PEL V IH P++ K YP PIV+ Sbjct: 731 FRIFNPWLQSEKFDAEGDFIRKWVPELQGVEGAAIHNPYAAGGKAAQIAKKNRYPEPIVE 790 Query: 463 HKKACHHTLNQYYA 476 HK A L +Y A Sbjct: 791 HKFARERCLARYKA 804 >gi|119484468|ref|ZP_01619085.1| deoxyribopyrimidine photolyase [Lyngbya sp. PCC 8106] gi|119457942|gb|EAW39065.1| deoxyribopyrimidine photolyase [Lyngbya sp. PCC 8106] Length = 479 Score = 430 bits (1105), Expect = e-118, Method: Composition-based stats. Identities = 167/482 (34%), Positives = 256/482 (53%), Gaps = 19/482 (3%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 L W R DLRI+D+K L AA ++V+ VF P Q ++ + ++ L ++QK Sbjct: 6 LFWHRRDLRISDHKGL-AAAREKSSQVVGVFCLDPNILDQDDVAPARVTYMIGCLQELQK 64 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH- 129 + G Q + +++N E RD+ + + L+ Sbjct: 65 QYEKVGSQLLILQGQPS----SAIPKLAKALEAKAVYWNLDVEPYAKDRDQQVSEALKEV 120 Query: 130 RVICKSFDDSVLLPPGSILNH-ALQMYKVYTPFRKALIQNLVQADLRS-------LPVPA 181 + ++ D +L P I A + YKVYTP+ + Q + + L Sbjct: 121 NIGVETVWDQLLHTPDEIRTKSANEPYKVYTPYWNNWSKRKKQKPIHTFSENPTGLTEKQ 180 Query: 182 IRLTGPVTPSNIPRFFDYPFQAIDPM-FPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ 240 +++ ++P D F + + GE+ A + L +FC ++ Y EQR+ PA Sbjct: 181 LKIAKENGIIDLPLAEDLGFVWENELILEPGEEAAQNRLEEFCDRALFEYDEQRNFPAND 240 Query: 241 GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLI-KPKSGAFSWLNELIWREFYRHLMAFYP 299 GTSQLS L GV+S R W + E + + ++ +W EL WREFY+ M +P Sbjct: 241 GTSQLSAALKFGVISIRTVWAKTVEAMENTRSDEARNNIKAWQQELAWREFYQQAMYHFP 300 Query: 300 SVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITAS 359 + G P+ + W+++ QAW +G TG+PI+DAAMRQLN IGWMHNR RMI A+ Sbjct: 301 ELANG-PYRDHFKDFPWSENQEHFQAWCEGKTGYPIVDAAMRQLNEIGWMHNRCRMIVAN 359 Query: 360 FLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFD 419 FL KDL+++W+ GE+YFM +L+DGDL++NNGGWQW+AS+G D P RIFNPT Q +++D Sbjct: 360 FLTKDLMINWQWGEKYFMQKLMDGDLSANNGGWQWSASSGMDPKP-LRIFNPTTQAQKYD 418 Query: 420 PQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479 P+G +IR WLPEL+++ T+Y+ K+ + +YP PIVDHK+ + Y K+ Sbjct: 419 PEGEYIRQWLPELSSLDTEYLVT-GKISSKDREACDYPEPIVDHKQQQQQFKSLYKEQKE 477 Query: 480 QS 481 S Sbjct: 478 AS 479 >gi|167031795|ref|YP_001667026.1| deoxyribodipyrimidine photo-lyase [Pseudomonas putida GB-1] gi|166858283|gb|ABY96690.1| Deoxyribodipyrimidine photo-lyase [Pseudomonas putida GB-1] Length = 475 Score = 430 bits (1105), Expect = e-118, Method: Composition-based stats. Identities = 192/476 (40%), Positives = 271/476 (56%), Gaps = 7/476 (1%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 +HL WLR+DLRI DN AL AA IA+++ +P QW+ H +A + F +L + Sbjct: 1 MHLTWLRSDLRIDDNTALSAATERG--PTIALWLVSPGQWQAHDDAACKVDFWLRNLRAL 58 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128 ++SL I + +D + + + C Q +V + +N +Y INE +RD L+ Sbjct: 59 RQSLEGLNIPLLIRKIDTWDQAPQAVLDVCRQHQVQSVHWNEEYGINEQQRDDATRALLE 118 Query: 129 HR-VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADL---RSLPVPAIRL 184 + S D +L PG+IL + ++V++ F+K +++L ++ R + A Sbjct: 119 KSSIQACSHLDQLLFRPGTILTRSGDYFQVFSQFKKTCLEHLHRSLPALARRVERQAPLQ 178 Query: 185 TGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244 F+ P +A+ +P GE A L +F E + Y + RD+PA GTSQ Sbjct: 179 IQSDPIPQHVDGFETPTRALREHWPAGEAEAQARLSRFLDETIDEYQQLRDLPAKHGTSQ 238 Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304 LS YL+ GV+SPRQC + +G +W+NEL+WREFY+H++ YP V Sbjct: 239 LSTYLAAGVISPRQCLHGALASNRGEFDSGSTGVQTWINELLWREFYKHILNGYPQVSRH 298 Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364 + F TE + W L+AWKQG TGFPIIDAAMRQL GWMHNRLRM+ A FL K+ Sbjct: 299 RAFRAHTEALPWRDAPADLEAWKQGRTGFPIIDAAMRQLLHTGWMHNRLRMVVAMFLSKN 358 Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424 LL+DWR GE +FM L+DGDLA+NNGGWQW+ASTG D+VPYFRIFNP Q +RFDPQG F Sbjct: 359 LLIDWRKGERHFMRHLIDGDLAANNGGWQWSASTGTDAVPYFRIFNPVSQSQRFDPQGRF 418 Query: 425 IRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQ 480 IRHWLPEL ++ + IH P D + +Y P+V + L + ++ Sbjct: 419 IRHWLPELRDMDEKTIHEPMK-SDDLFANNSYHRPMVILGSSRQRALEAFKGLPRR 473 >gi|256823595|ref|YP_003147558.1| Deoxyribodipyrimidine photo-lyase [Kangiella koreensis DSM 16069] gi|256797134|gb|ACV27790.1| Deoxyribodipyrimidine photo-lyase [Kangiella koreensis DSM 16069] Length = 459 Score = 430 bits (1105), Expect = e-118, Method: Composition-based stats. Identities = 186/468 (39%), Positives = 263/468 (56%), Gaps = 14/468 (2%) Query: 6 AMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASL 65 +++LVW RNDLR+ DN AL+ A VI +++ EQ H + + FIY S+ Sbjct: 2 RKNINLVWFRNDLRVGDNPALFYAAE--QGAVIGIYLEPVEQREAHDDAPCKIGFIYDSV 59 Query: 66 LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125 +++K L++ I + ++ S+E + Q +++N +Y NE RD LEK Sbjct: 60 NELRKKLNKLNIPLHSFKVKDYQQSVEKIVQLVEQYNTDGVYFNNEYPFNERNRDDELEK 119 Query: 126 -RLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL 184 L K FD V++PP S+ + YKV+TP++K+ I+ + LP+P+ + Sbjct: 120 VLLGKGKEVKRFDGDVIIPPNSVSTGKGEPYKVFTPYKKSWIEFHKTQGISPLPIPSKQD 179 Query: 185 TGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244 + +D+ ++P GE A L++F K YY E RDIPA++GTS Sbjct: 180 FKIEKQHD----YDFGHDYRKDLWPAGELAAQDRLKEFLP-KAGYYKEHRDIPAVKGTSM 234 Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304 LSPYL++G +S +QC L E + + +WL+E+IWREFYR ++ P + Sbjct: 235 LSPYLTVGAISAKQCIESLLEWYE--GDQEAFYLDTWLSEIIWREFYRQIIIDNPQISYH 292 Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364 PF +++ WN L + W Q TGFP+IDAAMRQL GWMHNRLRM A FL K Sbjct: 293 LPFKKDAKEV-WNGQHELFEKWCQAETGFPLIDAAMRQLIQTGWMHNRLRMNVAMFLNKL 351 Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424 L+DWR GE +FM L+DGD ASNNGGWQW +STG D PYFRI +P Q +RFDPQG F Sbjct: 352 CLIDWREGEAFFMRHLIDGDFASNNGGWQWCSSTGADGAPYFRIMSPITQSQRFDPQGKF 411 Query: 425 IRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLN 472 IR +PEL ++ + IH P S K L YP PI+D+K+A L Sbjct: 412 IRKLVPELASLNNKDIHFPTSQQRKE---LGYPEPIIDYKEARKAALA 456 >gi|67921140|ref|ZP_00514659.1| Deoxyribodipyrimidine photolyase [Crocosphaera watsonii WH 8501] gi|67857257|gb|EAM52497.1| Deoxyribodipyrimidine photolyase [Crocosphaera watsonii WH 8501] Length = 518 Score = 430 bits (1105), Expect = e-118, Method: Composition-based stats. Identities = 168/485 (34%), Positives = 256/485 (52%), Gaps = 19/485 (3%) Query: 5 TAMSVH-LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYA 63 ++M+ + W R DLR++DN L A +S +K++ +F + Q ++ + ++ Sbjct: 41 SSMTNSVIFWHRRDLRVSDNIGLSKAYQHS-SKLVGLFCLDTDILNQDNVAPARITYMLG 99 Query: 64 SLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLL 123 L +++S Q G Q + + D+ +V +F+N E +RD + Sbjct: 100 CLQDLRESYQQLGGQLLIFQGNPTQIIPQVADAL----KVDCVFWNNDVEPYSKKRDNQV 155 Query: 124 EKRLQHRVIC-KSFDDSVLLPPGSILNHALQ-MYKVYTPFRKALIQNLVQA------DLR 175 + LQ R I +++ D +L PG IL + YKVYTPF ++ ++ L Sbjct: 156 IEALQERGIHSQTYWDQLLHAPGDILTKSNNAPYKVYTPFWRSWLKEEKANIAQALGKLE 215 Query: 176 SLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPM-FPIGEQNALHILRKFCKEKVYYYVEQR 234 SL I + ++P D + P+ GE A L FC +Y Y EQR Sbjct: 216 SLSEEEINTVKNLGIIDLPTAKDLGYSWDAPLILEPGETAAKEQLNYFCDSLIYNYQEQR 275 Query: 235 DIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLI-KPKSGAFSWLNELIWREFYRH 293 + P I GTS LSP GV+ R+ W + + + + +W E+ WREFY+H Sbjct: 276 NYPGINGTSTLSPAFKFGVIGIREVWQATLSAYENTYSDEARENIQTWQQEIAWREFYQH 335 Query: 294 LMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRL 353 M F+P + G P+ + W+ + QAW +G TG+PI+DAAMRQLN GWMHNR Sbjct: 336 CMYFFPELATG-PYRQEFKDFSWDNNEQHFQAWCEGKTGYPIVDAAMRQLNETGWMHNRC 394 Query: 354 RMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTI 413 RMI ASFL KDL+++W+ GE+YFM +L+DGDL++NNGGWQW+AS+G D P RIFNP Sbjct: 395 RMIVASFLTKDLIINWQWGEKYFMQKLIDGDLSANNGGWQWSASSGMDPKP-LRIFNPAS 453 Query: 414 QGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQ 473 Q +++DP G +IR W+PE++++ T+Y+ + S Y PIVDHK+ + Sbjct: 454 QAQKYDPDGEYIRLWVPEISSLDTEYLVTGKIPPLEAH-SCGYLQPIVDHKQQQREFKER 512 Query: 474 YYAAK 478 Y K Sbjct: 513 YKQIK 517 >gi|315123469|ref|YP_004065475.1| putative deoxyribodipyrimidine photolyase [Pseudoalteromonas sp. SM9913] gi|315017229|gb|ADT70566.1| putative deoxyribodipyrimidine photolyase [Pseudoalteromonas sp. SM9913] Length = 464 Score = 430 bits (1105), Expect = e-118, Method: Composition-based stats. Identities = 181/468 (38%), Positives = 270/468 (57%), Gaps = 9/468 (1%) Query: 10 HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69 L W R DLR+ N+AL A +N I F +QW QH + Q + + ++ Sbjct: 3 TLFWFRRDLRLFSNEALIEALNNGAKHTI--FFVCEKQWAQHNTAPIQIDLLKRRVSYIR 60 Query: 70 KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL-Q 128 + L++ GI + F D L +C Q + + N++YE+NE RDK ++ + Q Sbjct: 61 EKLAEYGINLHVIEAPYFTDCQTKLLDFCQQYEIKHIIANKEYELNEFNRDKAIQAQCDQ 120 Query: 129 HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188 ++ ++ ++ P GS+ +MYKV+TPF++A ++ + P Sbjct: 121 QQITFTLYEGDIIAPVGSVRTQNNEMYKVFTPFKRAWLKQYQDTHFSLVSWPL-----SS 175 Query: 189 TPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPY 248 P +I +P+ + ++ F +K+ Y + RDIP+++GTS LSPY Sbjct: 176 NPIDIESCELLSSDDSSKKWPVDDDTLASVVDNFIHDKLASYDDVRDIPSVKGTSGLSPY 235 Query: 249 LSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFI 308 L++GV+S +Q +++++ D+L KS F+W+NELIWREFY+HL+A +P + G F Sbjct: 236 LALGVVSSKQLMVNIQQQYPDILTTSKSKTFTWVNELIWREFYKHLIAEFPKLSRGANFN 295 Query: 309 PWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVD 368 + + W + + W +G TG+P++DAAM+QL GWMHNRLRM+ ASFL K LL+D Sbjct: 296 EKYDSVAWRDNEAEFKLWCEGRTGYPLVDAAMQQLLQTGWMHNRLRMVVASFLTKHLLID 355 Query: 369 WRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHW 428 WR GE++FM L+DGDLASNNGGWQWAASTG D+ PYFR+FNP Q +RFDP G FIR + Sbjct: 356 WRKGEQFFMQHLIDGDLASNNGGWQWAASTGCDAQPYFRVFNPITQSERFDPSGQFIRKY 415 Query: 429 LPELNNVPTQYIHAPHSWLDKNDLSLN-YPLPIVDHKKACHHTLNQYY 475 LPEL VP ++IH PH++L S + Y IVDHK A L+ + Sbjct: 416 LPELEKVPDKHIHFPHTYLAATGQSEHCYWPAIVDHKAARARALDAFK 463 >gi|317052654|ref|YP_004113770.1| deoxyribodipyrimidine photo-lyase [Desulfurispirillum indicum S5] gi|316947738|gb|ADU67214.1| Deoxyribodipyrimidine photo-lyase [Desulfurispirillum indicum S5] Length = 469 Score = 430 bits (1105), Expect = e-118, Method: Composition-based stats. Identities = 195/467 (41%), Positives = 270/467 (57%), Gaps = 6/467 (1%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 ++LVWLRNDLRI+D +A A V+AVF QW++H ++A + F+ +L + Sbjct: 1 MNLVWLRNDLRISDQRA-LGAAAAEGGSVLAVFCLCQRQWQRHHMAAVRRDFLLRNLECL 59 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128 + L GI C +F E L +LF+N +Y I+E RRD +E+ + Sbjct: 60 RLQLQAVGIPLFVLDCHDFAAVPEALLKLARTTGARRLFFNEEYAIDEWRRDMAVERCFR 119 Query: 129 HRV-ICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187 + D V++P G + + + Y+V+TPF+KA ++ +V+ P P + Sbjct: 120 ENGMEVRRCCDHVVVPAGQLRSGRGECYRVFTPFQKAWLKLVVENPALLAPAPIVNTQPH 179 Query: 188 VTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSP 247 P + + ++P GE A L+ F + Y RD PAI+GTS LSP Sbjct: 180 PFPGDGAALPTDIPHPLAHLWPAGEAEAQRRLQAFLDGPIRRYHLDRDFPAIEGTSALSP 239 Query: 248 YLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPF 307 YL+ GVLS RQC + E L GA WL+ELIWREF++H++ +P V + F Sbjct: 240 YLACGVLSIRQCVSAALE----LANGGSEGARVWLSELIWREFFQHILRAFPRVSTNRAF 295 Query: 308 IPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLV 367 TE + W D AW +G TG+PI+DAAM QL++ GWMHNRLRMI A FL KDLL+ Sbjct: 296 QEHTETVAWRYDEGEFAAWCEGRTGYPIVDAAMAQLHSTGWMHNRLRMICAMFLTKDLLI 355 Query: 368 DWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRH 427 DWR GE YFM L+DGDLA+NNGGWQWAASTG D+VPYFR+F+PT Q KRFDP G FIRH Sbjct: 356 DWRWGERYFMEHLVDGDLAANNGGWQWAASTGTDAVPYFRVFHPTTQSKRFDPHGQFIRH 415 Query: 428 WLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQY 474 +LP+L + +YIH PH +++YP P+VDHK A ++ + Sbjct: 416 FLPQLAELDEKYIHEPHDSSGLLRPNIDYPRPMVDHKVARQRAIDAF 462 >gi|229199867|ref|ZP_04326458.1| Deoxyribodipyrimidine photolyase [Bacillus cereus m1293] gi|228583609|gb|EEK41836.1| Deoxyribodipyrimidine photolyase [Bacillus cereus m1293] Length = 476 Score = 429 bits (1104), Expect = e-118, Method: Composition-based stats. Identities = 155/480 (32%), Positives = 252/480 (52%), Gaps = 22/480 (4%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 +V + D R+ DN AL+ A + + V+ +++ I + +++ +++ V++ Sbjct: 6 IVMFQKDFRLYDNPALFEAAQSGE--VLPLYVYD----ETFSIGSASKWWLHHTIIDVKR 59 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130 L G + + +E + S Q +T +++N Y+ ++ ++ ++ L+ + Sbjct: 60 QLEALGSTLIIRKG----NILEEILSLIKQLGITAVYWNICYDPERLQFNQKVKMMLEDK 115 Query: 131 VI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAI--RLTGP 187 I CK F+ +LL P I YKV+TPF A + ++ + + L Sbjct: 116 GITCKEFNSHLLLEPWIIKKKDNTEYKVFTPFYNAFQKQVISKPISKVQSIKWGSSLPAS 175 Query: 188 VTPSNIPRFFDYPFQA-IDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246 ++ S + P+ + ++ ++ E+ A +KF K+ Y E RD P S L+ Sbjct: 176 LSVSELHLLPTIPWTSHMESIWEPTEEGAYKTFKKFFSSKLVSYSEGRDFPNQNAHSMLA 235 Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKP-KSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305 PYLS G +S + ++ L + + + S++ + IWREF +L+ YP + K Sbjct: 236 PYLSFGQISVKVMYHYLINKSNEKQCSLFEQQVNSFIRQFIWREFSYYLLYHYP-FTVYK 294 Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365 P E WN + LL+ W++G TG+P IDA MR+L G+MHNR RM ASFLVK L Sbjct: 295 PLNKNFEHFPWNNEEELLRVWQKGETGYPFIDAGMRELWQTGFMHNRARMAVASFLVKHL 354 Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425 L+ W+ G ++FM LLD D+A+N GWQW A +G D+ PYFRIFNP QG++FD G +I Sbjct: 355 LIPWQEGAKWFMDTLLDADIANNTMGWQWVAGSGADASPYFRIFNPITQGEKFDKDGEYI 414 Query: 426 RHWLPELNNVPTQYIHAPHS----WLDKNDLSLN--YPLPIVDHKKACHHTLNQYYAAKK 479 R W+PEL ++P +YIH P L K ++ L YPLP+VDHK A L Y + K+ Sbjct: 415 RKWVPELRDMPNKYIHKPWEAPEHILQKANIKLGDTYPLPVVDHKAARERALCAYKSMKE 474 >gi|218246283|ref|YP_002371654.1| Deoxyribodipyrimidine photo-lyase [Cyanothece sp. PCC 8801] gi|218166761|gb|ACK65498.1| Deoxyribodipyrimidine photo-lyase [Cyanothece sp. PCC 8801] Length = 481 Score = 429 bits (1104), Expect = e-118, Method: Composition-based stats. Identities = 170/478 (35%), Positives = 247/478 (51%), Gaps = 17/478 (3%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 L W R DLRI+DN L A S +KV+ +F Q+ I+ + ++ L ++Q+ Sbjct: 6 LFWHRKDLRISDNIGLAKARQKS-SKVVGIFCFDSNILEQNDIAPVRIAYLIGCLQELQQ 64 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130 + + G + Q + +F+N E RRD+ + + L+ + Sbjct: 65 TYQKLGSNLLFIQGEPSH----IIPQLAAVLDAEAVFWNLDVEPYSQRRDEQVIQALKEQ 120 Query: 131 VI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQ------ADLRSLPVPAIR 183 I +++ D +L PG I+ + + YKVYTPF K L L ++ Sbjct: 121 GIKTQTYWDQLLHYPGEIVTKSGEPYKVYTPFWKNWELQSKDSITNNLESLEGLTQTELQ 180 Query: 184 LTGPVTPSNIPRFFDYPFQAIDPM-FPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGT 242 V ++P + ++ P+ GE A L FC + Y EQR+ PAI+GT Sbjct: 181 QAKNVNIIDLPTVQELGYRWDYPLILSPGETAAAERLDYFCDAAINEYQEQRNFPAIEGT 240 Query: 243 SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKP-KSGAFSWLNELIWREFYRHLMAFYPSV 301 SQLSP L GV+ R W + + + +W EL WREFY+H + F+P + Sbjct: 241 SQLSPALKFGVIGIRTVWQATLKAMENSRSDEVRESIVTWQKELAWREFYQHCLYFFPEL 300 Query: 302 CMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFL 361 G P+ + W+ + L QAW +G TG+PI+DAAMRQLN GWMHNR RMI ASFL Sbjct: 301 AEG-PYREDFQDFPWDNNEVLFQAWCEGKTGYPIVDAAMRQLNETGWMHNRCRMIVASFL 359 Query: 362 VKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQ 421 KDL+++W+ GE+YFM L+DGDLA+NNGGWQW+AS+G D P RIFNP Q ++FDP Sbjct: 360 TKDLMINWQWGEKYFMQTLIDGDLAANNGGWQWSASSGMDPKP-LRIFNPASQAQKFDPD 418 Query: 422 GTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479 +IR WLPEL ++ T+ + LS YP PIV+H + +Y K+ Sbjct: 419 ADYIRQWLPELRSLDTEVLVTGKISPLDC-LSCGYPQPIVNHNQQQREFKRRYSQVKQ 475 >gi|228966105|ref|ZP_04127168.1| Deoxyribodipyrimidine photolyase [Bacillus thuringiensis serovar sotto str. T04001] gi|228793590|gb|EEM41130.1| Deoxyribodipyrimidine photolyase [Bacillus thuringiensis serovar sotto str. T04001] Length = 476 Score = 429 bits (1104), Expect = e-118, Method: Composition-based stats. Identities = 159/480 (33%), Positives = 253/480 (52%), Gaps = 22/480 (4%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 +V + D R+ DN AL+ A + + V+ V++ + + +++ +++ V+K Sbjct: 6 IVMFQKDFRLYDNPALFEAVQSGE--VLPVYVQDEDFL----MGEASKWWLHHAVIDVKK 59 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH- 129 L G + E + S Q +T +++N Y+ + ++ ++ ++ L+ Sbjct: 60 QLEALGSTLIIRKGRTE----EEILSLIEQLDITAVYWNICYDPDRLQSNQKMKMMLEDK 115 Query: 130 RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAI--RLTGP 187 +ICK F+ +LL P I YKV+TPF A + ++ + + L Sbjct: 116 GIICKEFNSHLLLEPWIIKKKDNTEYKVFTPFYNAFQKQVIPKPISKVQSIKWGSSLPAS 175 Query: 188 VTPSNIPRFFDYPFQA-IDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246 ++ S + P+ + I+ ++ E+ A +KF K+ Y E RD P S L+ Sbjct: 176 LSVSELHLLPTIPWTSHIESIWEPTEEGAYKTFKKFFSSKLASYSEGRDFPNQNAHSMLA 235 Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKP-KSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305 PYLS G +S + ++ L + + + S++ +LIWREF +L+ YP + K Sbjct: 236 PYLSFGQISVKLMYHYLINKSTERQCSLFEKQVNSFIRQLIWREFSYYLLYHYP-FTVYK 294 Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365 P E WNK+ LL+ W++G TG+P IDA MR+L G+MHNR RM ASFLVK L Sbjct: 295 PLNKNFEHFPWNKEEELLRVWQKGETGYPFIDAGMRELWQTGFMHNRTRMAVASFLVKHL 354 Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425 L+ W+ G ++FM LLD D+A+N GWQW A +G D+ PYFRIFNP QG++FD G +I Sbjct: 355 LIPWQEGAKWFMDTLLDADIANNTMGWQWVAGSGADASPYFRIFNPITQGEKFDKNGEYI 414 Query: 426 RHWLPELNNVPTQYIHAPHS----WLDKNDLSLN--YPLPIVDHKKACHHTLNQYYAAKK 479 R W+PEL ++P +YIH P L K ++ L YPLP+VDHK A L Y + K+ Sbjct: 415 RKWVPELRDIPNKYIHKPWEAPEHILQKANIKLGNTYPLPVVDHKAARERALCAYKSMKE 474 >gi|126658357|ref|ZP_01729506.1| deoxyribopyrimidine photolyase [Cyanothece sp. CCY0110] gi|126620289|gb|EAZ91009.1| deoxyribopyrimidine photolyase [Cyanothece sp. CCY0110] Length = 476 Score = 429 bits (1104), Expect = e-118, Method: Composition-based stats. Identities = 165/481 (34%), Positives = 254/481 (52%), Gaps = 18/481 (3%) Query: 8 SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67 ++ + W R DLR++DN L A S +K++ +F + I+ + +++ L Sbjct: 3 NIIIFWHRRDLRVSDNIGLSQAYQKS-SKLVGLFCLDSNLLNRDDIAPARVNYMLGCLQH 61 Query: 68 VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127 +QKS + G Q + D+ V +F+N E RDK +++ L Sbjct: 62 LQKSYQKLGSQLLIFQGEPTKIIPKVADAL----NVDCVFWNNDVEPYSKERDKQVKEAL 117 Query: 128 QHR-VICKSFDDSVLLPPGSILNH-ALQMYKVYTPFRKALIQNLVQA------DLRSLPV 179 + + + K++ D +L PG IL YKVYTPF ++ ++ L SL Sbjct: 118 EEKSIQSKTYWDQLLHAPGEILTKSNNDPYKVYTPFWRSWVKEEKADIVESIEKLESLSD 177 Query: 180 PAIRLTGPVTPSNIPRFFDYPFQAIDPMF-PIGEQNALHILRKFCKEKVYYYVEQRDIPA 238 I + ++P D + P+ GE A L F +Y Y EQR++PA Sbjct: 178 EEINTVKDLGLIDLPTAKDLGYSWDAPLLLEPGETAAKEQLNYFSDNAIYSYQEQRNLPA 237 Query: 239 IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLI-KPKSGAFSWLNELIWREFYRHLMAF 297 I TS+LSP G++ R+ W E + + + + +W E+ WREFY+H + F Sbjct: 238 IDATSKLSPAFKFGIIGIREVWQATVEAYENTRSDEARENIQTWQQEIAWREFYQHCLYF 297 Query: 298 YPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMIT 357 +P + G P+ ++ W+ + QAW +G TG+PI+DAAMRQLN GWMHNR RMI Sbjct: 298 FPELAEG-PYRDEFKEFPWDNNEQHFQAWCEGKTGYPIVDAAMRQLNETGWMHNRCRMIV 356 Query: 358 ASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKR 417 ASFL KDL+++W+ GE+YFM +L+DGDL++NNGGWQW+AS+G D P RIFNP Q ++ Sbjct: 357 ASFLTKDLIINWQWGEKYFMQKLIDGDLSANNGGWQWSASSGMDPKP-LRIFNPASQAQK 415 Query: 418 FDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477 +DP G +IR W+PE++++ T+ + + S YP PIVDHK+ +Y Sbjct: 416 YDPDGEYIRLWVPEISSLDTECLVTGKIPPLEAH-SCGYPQPIVDHKQQQREFKERYKRI 474 Query: 478 K 478 K Sbjct: 475 K 475 >gi|262377211|ref|ZP_06070436.1| deoxyribodipyrimidine photolyase FAD-binding [Acinetobacter lwoffii SH145] gi|262307949|gb|EEY89087.1| deoxyribodipyrimidine photolyase FAD-binding [Acinetobacter lwoffii SH145] Length = 469 Score = 429 bits (1104), Expect = e-118, Method: Composition-based stats. Identities = 185/475 (38%), Positives = 277/475 (58%), Gaps = 12/475 (2%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 + L+W R DLRI D+ AL+ A IAV + +PEQW+ H + + F L + Sbjct: 1 MQLIWFRQDLRIHDHAALWHATQ--QGSCIAVMVLSPEQWKLHQDARIKIDFYLRRLDIL 58 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128 ++ L+Q I + D + S C + ++ L N + +NE++RD +++ L+ Sbjct: 59 KQQLAQLNIPLIILNVPLWQDLPAEMRSLCQKLQIDTLHANIEVGVNELQRDAQVQQMLE 118 Query: 129 HRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLP----VPAIR 183 + I + + D L P SI N + Q Y++Y+ F+K + L+Q P + Sbjct: 119 QQQIRVELYHDRSLFPLTSIRNQSNQPYQIYSAFKKKCYERLIQNIPGCYPDIQAQDPVE 178 Query: 184 LTGPVTPSNIPRFF-DYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGT 242 L +T ++ +F +Y ++P + AL +L F ++K+ +Y +R++PA+ GT Sbjct: 179 LPDQLTSFDLQKFAANYEVDHAAQLWPAQDHTALELLDDFIEDKIAHYKTERELPAVDGT 238 Query: 243 SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVC 302 S+LSPYL+IG+LS RQC L ++ G +WL+EL+WREFY H + +P V Sbjct: 239 SRLSPYLNIGILSIRQCMQTLFKDSY--FQIDDIGQQTWLDELLWREFYLHTLFDFPRVS 296 Query: 303 MGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLV 362 +PF T+ I+W L AW+QG TG PI+DA MRQ+ GWMHNR+RMITA FL Sbjct: 297 RHRPFKENTDNIQWRNAPDNLAAWQQGQTGIPIVDAGMRQMRATGWMHNRVRMITAMFLC 356 Query: 363 KDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQG 422 K+LL+DWR+GE +FM L+DGDLA+NNGGWQW ASTG D+VPYFRIFNP Q ++FDP G Sbjct: 357 KNLLIDWRLGESWFMQHLIDGDLAANNGGWQWCASTGMDAVPYFRIFNPVSQSQKFDPNG 416 Query: 423 TFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477 +IR W+PEL ++ + IH P++ DL+L+YP PIVD K + + + Sbjct: 417 DYIRQWVPELTHLNAKSIHEPYA--KNPDLALDYPKPIVDLKASRVRAIEAFKQI 469 >gi|24374895|ref|NP_718938.1| deoxyribodipyrimidine photolyase [Shewanella oneidensis MR-1] gi|24349596|gb|AAN56382.1|AE015774_17 deoxyribodipyrimidine photolyase [Shewanella oneidensis MR-1] Length = 512 Score = 429 bits (1104), Expect = e-118, Method: Composition-based stats. Identities = 202/510 (39%), Positives = 278/510 (54%), Gaps = 36/510 (7%) Query: 4 TTAMSVHLVWLRNDLRITDNKALYAAC----HNSDAKVIAVFIATPEQWRQHGISARQSH 59 + L+W R DLR+TDN+A AAC + AK+ A++IATP QW QH I+ Q Sbjct: 6 NRSGKHALMWFRQDLRLTDNQAFTAACDWVRQHHAAKLKAIYIATPSQWHQHDIAPIQLD 65 Query: 60 FIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRR 119 FI + + + L G+ F+ Q +F D +L SYC + + ++F ++ EINE +R Sbjct: 66 FIQRHVNLLAQGLVSLGVEFELIQLDSFRDIPAFLTSYCEEHSIGRVFAGQEPEINEQKR 125 Query: 120 DKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPV 179 D+ ++ + D+ LLPPG++LN + MY+V+TPF + + + + L V Sbjct: 126 DQA---CVEAGIPLSLSDEHCLLPPGTVLNLSGDMYRVFTPFSRKWREVAAKQAILPLGV 182 Query: 180 PAIRLTGPVTP---------------SNIPRFFDYPFQAIDP-------MFPIGEQNALH 217 PA + P S F P + GE A Sbjct: 183 PAPLGSILSEPKPLFFKNIGSTYLAASKDIASSKKGFNQTAPNPLISSEQWAAGEGQAKR 242 Query: 218 ILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSG 277 +L +F ++KV Y + RD PAI GTS +SPYL+IGVLSPRQC L + F ++++ S Sbjct: 243 LLNQFIQQKVQDYKQDRDFPAIDGTSVISPYLAIGVLSPRQCVAALLQRFPEVIVDDTSP 302 Query: 278 AFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIID 337 +WLNELIWREFYRHL+ +P + G F + + W + AW +G TG+PI+D Sbjct: 303 GRTWLNELIWREFYRHLLVAFPDLSKGNNFNRQADHVLWRNNQSEFLAWCEGKTGYPIVD 362 Query: 338 AAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAAS 397 AAMRQLN GWMHNRLRM+ ASFL K LL+DWR GE YF L+DGDLA+NNGGWQW+A Sbjct: 363 AAMRQLNQTGWMHNRLRMVVASFLTKHLLIDWRWGERYFRQHLIDGDLAANNGGWQWSAG 422 Query: 398 TGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLS---- 453 G D+ PYFRIFNP Q ++FDP G FIR +LPEL + +H P+ + Sbjct: 423 CGCDAQPYFRIFNPMSQSEKFDPDGRFIRKYLPELASWGVTRLHQPNQQKMPSLFEAPLF 482 Query: 454 ---LNYPLPIVDHKKACHHTLNQYYAAKKQ 480 +YP IV+H A L KK Sbjct: 483 ASQADYPNAIVEHNAARARALTVLGVLKKA 512 >gi|330722082|gb|EGG99998.1| Deoxyribodipyrimidine photolyase [gamma proteobacterium IMCC2047] Length = 463 Score = 429 bits (1103), Expect = e-118, Method: Composition-based stats. Identities = 210/465 (45%), Positives = 288/465 (61%), Gaps = 6/465 (1%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 + LVWLRNDLR+ DN ALYAACH A V AV+IATP+QW QH SA + F A+L + Sbjct: 1 MKLVWLRNDLRLDDNPALYAACH-GTAPVRAVYIATPKQWLQHDESAAKLGFRSAALTDL 59 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128 + L++ GI F+ Q S F D + L YC + VT L++NR++ ++E RD + +RL Sbjct: 60 KSKLAELGIGFELLQASYFSDIADLLADYCQRHAVTDLYFNREFPLHEQDRDNQVCQRLT 119 Query: 129 HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188 I ++ LL I N Q YKV+TP+ KA ++ L D L P + Sbjct: 120 ALNINCHTSNADLLICAPIQNLQGQPYKVFTPWYKAWLKQLNNQDNTPLTAPKAVGSALN 179 Query: 189 TPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPY 248 +P+N D ++P EQ+AL L +FC+ ++++Y + RD PAI GTS LSPY Sbjct: 180 SPNNEHVKLPNSGAFRDDLWPASEQDALQHLAQFCQRRLHHYSDTRDFPAINGTSTLSPY 239 Query: 249 LSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFI 308 L+ G++SPR+C +++ + + A WL EL WREFYR+LM +P + GKPF Sbjct: 240 LASGLVSPRRCLMAIQQTAFEQGWDWRESA--WLRELGWREFYRYLMISFPHISHGKPFK 297 Query: 309 PWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVD 368 ++ W ++ LL AW+ G TGFPIIDAAMRQL + WMHNRLRM+ ASFL K +L+D Sbjct: 298 TTPQQWPWRENPALLSAWQTGNTGFPIIDAAMRQLVSTSWMHNRLRMLVASFLCKLMLID 357 Query: 369 WRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHW 428 WR GE +FM QL+DGD SNNGGWQW+ASTG D+ P+FRIFNPT Q ++FD +G FIR + Sbjct: 358 WREGERFFMQQLIDGDFTSNNGGWQWSASTGCDASPWFRIFNPTTQSQKFDAEGKFIRKF 417 Query: 429 LPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQ 473 LPEL + + IH P + L + L YP PI+D+K A ++ Sbjct: 418 LPELAELDNKQIHNPSNTLRQ---KLGYPDPIIDYKTARERAISA 459 >gi|171463059|ref|YP_001797172.1| Deoxyribodipyrimidine photo-lyase [Polynucleobacter necessarius subsp. necessarius STIR1] gi|171192597|gb|ACB43558.1| Deoxyribodipyrimidine photo-lyase [Polynucleobacter necessarius subsp. necessarius STIR1] Length = 490 Score = 429 bits (1103), Expect = e-118, Method: Composition-based stats. Identities = 172/498 (34%), Positives = 249/498 (50%), Gaps = 35/498 (7%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGIS---------ARQ 57 M LVWLR DLR+ DN AL+ A S +V FI E + R+ Sbjct: 1 MQKALVWLRRDLRLYDNSALHHALKES-RQVWLAFIFDTEILKPLLRGKLDANGLKHDRR 59 Query: 58 SHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEV 117 FI+ + Q+ L +G F + E + + V +F N YE + + Sbjct: 60 VDFIWQGIKQIDDQLRAQGGGLIVR----FSNPTECIPQLASELGVNAVFANHDYEPSAI 115 Query: 118 RRDKLLEKRL-QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRS 176 RD+++ +L + + +F D V+ IL ++ ++ ++TP++ + L + DL + Sbjct: 116 ERDEVVTAKLEKEGIEFLTFKDQVIFEKKEILTNSNTVFSIFTPYKNNWFKTLQEKDLAA 175 Query: 177 LPVPAIRLTGPVTPSNIPR----FFDYPF--QAIDPMFPIGEQNALHILRKFCKEKVYYY 230 P I + F I+ P G + L F ++ Y Sbjct: 176 YECNPKPGQLAAIPKKISKPLPSLESMGFCPTGIESYLPPGSEGGQAFLEDFLT-RIDQY 234 Query: 231 VEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREF 290 RD PAI+G S LS +L G+LS R + GA WL+ELIWR+F Sbjct: 235 QISRDFPAIKGVSYLSTHLRFGMLSIRGLVREAHRRM----LAGSMGATIWLSELIWRDF 290 Query: 291 YRHLMAFYPSVCMGKPFIPWTEKIEWN---KDSHLLQAWKQGYTGFPIIDAAMRQLNTIG 347 Y ++A +P + G F P + I W L AW +G TG+P++DAAM QLN G Sbjct: 291 YFMILANHPRLAKGASFKPDYDNIVWESGATAKKLFTAWCEGKTGYPLVDAAMHQLNQSG 350 Query: 348 WMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFR 407 +MHNRLRM+ ASFL KDL +DWR GE YF L D +L+SNNGGWQW +S+G D+ PYFR Sbjct: 351 YMHNRLRMVVASFLTKDLGIDWRWGEAYFAEHLNDFELSSNNGGWQWVSSSGCDAQPYFR 410 Query: 408 IFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSW----LDKNDLSL--NYPLPIV 461 IFNP Q ++FDP+G FI+ +LP+L + + +H P L+ +SL +YPLP+V Sbjct: 411 IFNPITQSEKFDPEGKFIKRYLPQLEKLSKKSVHTPWKAGHIELEAAGISLDKDYPLPVV 470 Query: 462 DHKKACHHTLNQYYAAKK 479 DH +A TL +Y KK Sbjct: 471 DHDEARKKTLVRYSVVKK 488 >gi|254428910|ref|ZP_05042617.1| deoxyribodipyrimidine photolyase family [Alcanivorax sp. DG881] gi|196195079|gb|EDX90038.1| deoxyribodipyrimidine photolyase family [Alcanivorax sp. DG881] Length = 501 Score = 429 bits (1103), Expect = e-118, Method: Composition-based stats. Identities = 180/482 (37%), Positives = 264/482 (54%), Gaps = 18/482 (3%) Query: 9 VHLVWLRNDLRITDNKALYAACHNS------DAKVIAVFIATPEQWRQHGISARQSHFIY 62 ++LVW RNDLR+ + L AA S + +AV+ QW +H ++ + ++ Sbjct: 1 MNLVWYRNDLRVAAHSPLQAALSESSGEAVSGPRALAVYCLCQGQWDRHQVAPLRRWYVL 60 Query: 63 ASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKL 122 S+ ++ ++L+++GI + F E L + + VT L+ NR+Y +NE +RDK Sbjct: 61 ESVRELGEALARRGIDLHVLEADTFAAVPEVLAQFAQEHGVTHLYCNREYPLNEKQRDKA 120 Query: 123 LEKRLQ-HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPA 181 + +RL+ V + FDD VL+PP ++ Y V+ ++K + P P Sbjct: 121 VAERLRGQGVSLQGFDDGVLVPPAALRTGKGTPYTVFGAYKKRWDVWMADHHPAVTPAPP 180 Query: 182 I-----RLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDI 236 G + P +A+ + GE+ A L +F ++ + Y QRD Sbjct: 181 ESDHRGNFVGAAVVDKALKALSVP-EALTQQWLPGEEAAWQQLDQFVEQALAGYRRQRDF 239 Query: 237 PAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMA 296 P I GTS LS LS G LS C+ + D + GA W+ EL WR+FYR +MA Sbjct: 240 PDIAGTSGLSAALSAGALSVASCYRAASQAMADAGSRD--GATCWIGELAWRDFYRQIMA 297 Query: 297 FYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMI 356 +P V G+ F P T+ ++W++D AW +G TG+P++DAAMRQL GWMHNRLRM+ Sbjct: 298 QFPRVSRGQAFRPETDLLQWDQDDERFAAWCEGRTGYPLVDAAMRQLVATGWMHNRLRMV 357 Query: 357 TASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGK 416 TA FL K L +DWR GE +FM+ L+DGD A+NNGGWQW+AS G D+VPYFR+FNP QG+ Sbjct: 358 TAMFLSKHLWLDWRRGEAFFMAHLMDGDFAANNGGWQWSASAGTDAVPYFRVFNPVRQGQ 417 Query: 417 RFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYA 476 RFD +G FI W+PEL + ++ IH P + L+ +YP PIV H + A Sbjct: 418 RFDSEGRFIARWVPELRGLDSKQIHEPWK---QPLLAPDYPPPIVPHAGVRERVTTAFKA 474 Query: 477 AK 478 AK Sbjct: 475 AK 476 >gi|42782239|ref|NP_979486.1| deoxyribodipyrimidine photolyase family protein [Bacillus cereus ATCC 10987] gi|42738164|gb|AAS42094.1| deoxyribodipyrimidine photolyase family protein [Bacillus cereus ATCC 10987] Length = 476 Score = 429 bits (1103), Expect = e-118, Method: Composition-based stats. Identities = 159/480 (33%), Positives = 252/480 (52%), Gaps = 22/480 (4%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 +V + D R+ DN AL+ A + + V+ V++ + + +++ +++ V+K Sbjct: 6 IVMFQKDFRLYDNPALFKATQSGE--VVPVYVHD----ETFSMGSASKWWLHHAIIDVKK 59 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130 L G + S E + S Q +T +++N Y+ + ++ ++ ++ L+ + Sbjct: 60 QLEALGSTLIIRKGSTE----EEILSLIEQLGITAVYWNICYDPDRLQFNQNMKMMLEDK 115 Query: 131 VI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAI--RLTGP 187 I CK F+ +LL P I YKV+TPF A + ++ + + L Sbjct: 116 GITCKEFNSHLLLEPWMIKKKDNTEYKVFTPFYNAFQKQVISKPISKVQSIKWGSSLPES 175 Query: 188 VTPSNIPRFFDYPFQA-IDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246 ++ + + P+ + I+ ++ E+ A +KF K+ Y E RD P S L+ Sbjct: 176 LSVTELHLLPTIPWTSHIESIWDPTEEGAYKTCKKFFSSKLASYSEGRDFPNQNAHSMLA 235 Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKP-KSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305 PYLS G +S R ++ L + + + S++ +LIWREF +L+ YP + K Sbjct: 236 PYLSFGQISVRWMYHYLINKSTERQCSLFEKQVNSFIRQLIWREFSYYLLYHYP-FTVYK 294 Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365 P E WN + LL W++G TG+P IDA MR+L G+MHNR RM ASFLVK L Sbjct: 295 PLNKNFEHFPWNNEEELLTVWQKGETGYPFIDAGMRELWQTGFMHNRARMAVASFLVKHL 354 Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425 L+ W+ G ++FM LLD D+A+N GWQW A +G D+ PYFRIFNP QG++FD G +I Sbjct: 355 LIPWQEGAKWFMDTLLDADIANNTMGWQWVAGSGADASPYFRIFNPITQGEKFDKDGEYI 414 Query: 426 RHWLPELNNVPTQYIHAPHS----WLDKNDLSLN--YPLPIVDHKKACHHTLNQYYAAKK 479 R W+PEL ++P +YIH P L K ++ L YPLP+VDHK A L Y + K+ Sbjct: 415 RKWVPELKDMPNKYIHKPWEAPEHILQKANIKLGDTYPLPVVDHKAARERALCAYKSMKE 474 >gi|222096635|ref|YP_002530692.1| deoxyribodipyrimidine photolyase [Bacillus cereus Q1] gi|221240693|gb|ACM13403.1| deoxyribodipyrimidine photolyase [Bacillus cereus Q1] Length = 476 Score = 429 bits (1103), Expect = e-118, Method: Composition-based stats. Identities = 156/480 (32%), Positives = 252/480 (52%), Gaps = 22/480 (4%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 +V + D R+ DN AL+ A + + V+ V++ I + +++ +++ V++ Sbjct: 6 IVMFQKDFRLYDNPALFEAAQSGE--VVPVYVHD----ETFSIGSASKWWLHHTIIDVKR 59 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130 L G + + +E + S Q +T +++N Y+ ++ ++ ++ L+ + Sbjct: 60 QLEALGSTLIIRKGNT----LEEILSLIKQLGITAVYWNICYDPERLQFNQKMKMMLEDK 115 Query: 131 VI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAI--RLTGP 187 I CK F+ +LL P I YKV+TPF A + ++ + + L Sbjct: 116 GITCKEFNSHLLLEPWIIKKKDNTEYKVFTPFYNAFQKQVISKPISKVQSIKWGSSLPAS 175 Query: 188 VTPSNIPRFFDYPFQA-IDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246 ++ S + P+ + ++ ++ E+ A +KF K+ Y E RD P S L+ Sbjct: 176 LSVSELHLLPTIPWTSHMESIWEPTEEGAYKTFKKFFSSKLVSYSEGRDFPNQNAHSMLA 235 Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKP-KSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305 PYLS G +S + ++ L + + + S++ + IWREF +L+ YP + K Sbjct: 236 PYLSFGQISVKLMYHYLINKSNEKQCSLFEQQVNSFIRQFIWREFSYYLLYHYP-FTVYK 294 Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365 P E WN + LL+ W++G TG+P IDA MR+L G+MHNR RM ASFLVK L Sbjct: 295 PLNKNFEHFPWNNEEELLRVWQKGETGYPFIDAGMRELWQTGFMHNRARMAVASFLVKHL 354 Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425 L+ W+ G ++FM LLD D+A+N GWQW A +G D+ PYFRIFNP QG++FD G +I Sbjct: 355 LIPWQEGAKWFMDTLLDADIANNTMGWQWVAGSGADASPYFRIFNPITQGEKFDKDGEYI 414 Query: 426 RHWLPELNNVPTQYIHAPHS----WLDKNDLSLN--YPLPIVDHKKACHHTLNQYYAAKK 479 R W+PEL ++P +YIH P L K ++ L YPLP+VDHK A L Y + K+ Sbjct: 415 RKWVPELRDMPNKYIHKPWEAPEHILQKANIKLGDTYPLPVVDHKAARERALCAYKSMKE 474 >gi|228934418|ref|ZP_04097254.1| Deoxyribodipyrimidine photolyase [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228825271|gb|EEM71067.1| Deoxyribodipyrimidine photolyase [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] Length = 476 Score = 429 bits (1103), Expect = e-118, Method: Composition-based stats. Identities = 158/480 (32%), Positives = 253/480 (52%), Gaps = 22/480 (4%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 +V + D R+ DN AL+ A + + V+ V++ + + +++ +++ V+K Sbjct: 6 IVMFQKDFRLYDNPALFEAAQSGE--VVPVYVHD----ETFSMGSASKWWLHHAIIDVKK 59 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130 L G + S E + S Q +T +++N Y+ + ++ ++ ++ L+ + Sbjct: 60 QLEALGSTLIIRKGSTE----EEILSLVEQLGITAVYWNICYDPDRLQFNQKMKMMLEDK 115 Query: 131 V-ICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189 ICK F+ +LL P I YKV+TPF A + ++ + + + PV+ Sbjct: 116 GMICKEFNSHLLLEPWVIKKKDNTEYKVFTPFYNAFQKQVIHKPISKVQSIKGGNSLPVS 175 Query: 190 PS--NIPRFFDYPFQA-IDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246 S + P+ + ++ ++ E+ A +KF K+ Y E RD P S L+ Sbjct: 176 LSVSELHLLPTIPWTSHMESIWEPTEEGAYKTCKKFFSSKLASYSEGRDFPNQNAHSMLA 235 Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKP-KSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305 PYLS G +S + ++ L + + + S++ +LIWREF +L+ YP K Sbjct: 236 PYLSFGQISVKLIYHYLINKSTESQCSLFEKQVNSFIRQLIWREFSYYLLYHYPFTAY-K 294 Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365 P E WN + LL+ W++G TG+P IDA MR+L G+MHNR RM ASFL+K L Sbjct: 295 PLNKSFEHFPWNNEEELLRVWQKGETGYPFIDAGMRELWQTGFMHNRTRMAVASFLIKHL 354 Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425 L+ W+ G ++FM LLD D+A+N GWQW A +G D+ PYFRIFNP QG++FD G +I Sbjct: 355 LIPWQEGAKWFMDTLLDADIANNTMGWQWVAGSGADASPYFRIFNPITQGEKFDKNGEYI 414 Query: 426 RHWLPELNNVPTQYIHAPHS----WLDKNDLSLN--YPLPIVDHKKACHHTLNQYYAAKK 479 R W+PEL ++P +YIH P L K ++ L YPLP+VDHK A L Y + K+ Sbjct: 415 RKWVPELKDMPNKYIHKPWEAPEHILQKANIQLGHTYPLPVVDHKAARERALCAYKSMKE 474 >gi|218898230|ref|YP_002446641.1| deoxyribodipyrimidine photolyase family protein [Bacillus cereus G9842] gi|218544312|gb|ACK96706.1| deoxyribodipyrimidine photolyase family protein [Bacillus cereus G9842] Length = 476 Score = 429 bits (1103), Expect = e-118, Method: Composition-based stats. Identities = 160/480 (33%), Positives = 253/480 (52%), Gaps = 22/480 (4%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 +V + D R+ DN AL+ A + + V+ V++ I + +++ +++ V+K Sbjct: 6 IVMFQKDFRLYDNPALFEAVQSGE--VLPVYVQD----ETFSIGSAAKWWLHHAVIDVKK 59 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH- 129 L G + E + S Q +T +++N Y+ + ++ ++ ++ L+ Sbjct: 60 QLEALGSTLIIRKGRTE----EEILSLIEQLDITAVYWNICYDPDRLQSNQKMKMMLEDK 115 Query: 130 RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAI--RLTGP 187 +ICK F+ +LL P I YKV+TPF A + ++ + + L Sbjct: 116 GIICKEFNSHLLLEPWIIKKKDNTEYKVFTPFYNAFQKQVIPKPISKVQSIKWGSSLPAS 175 Query: 188 VTPSNIPRFFDYPFQA-IDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246 ++ S + P+ + I+ ++ E+ A +KF K+ Y E RD P S L+ Sbjct: 176 LSVSELHLLPTIPWTSHIESIWEPTEEGAYKTFKKFFSSKLASYSEGRDFPNQNAHSMLA 235 Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKP-KSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305 PYLS G +S + ++ L + + + S++ +LIWREF +L+ YP + K Sbjct: 236 PYLSFGQISVKLMYHYLINKSTERQCSLFEKQVNSFIRQLIWREFSYYLLYHYP-FTVYK 294 Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365 P E WNK+ LL+ W++G TG+P IDA MR+L G+MHNR RM ASFLVK L Sbjct: 295 PLNKNFEHFPWNKEEELLRVWQKGETGYPFIDAGMRELWQTGFMHNRTRMAVASFLVKHL 354 Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425 L+ W+ G ++FM LLD D+A+N GWQW A +G D+ PYFRIFNP QG++FD G +I Sbjct: 355 LIPWQEGAKWFMDTLLDADIANNTMGWQWVAGSGADASPYFRIFNPITQGEKFDKNGEYI 414 Query: 426 RHWLPELNNVPTQYIHAPHS----WLDKNDLSLN--YPLPIVDHKKACHHTLNQYYAAKK 479 R W+PEL ++P +YIH P L K ++ L YPLP+VDHK A L Y + K+ Sbjct: 415 RKWVPELRDIPNKYIHKPWEAPEHILQKANIKLGNTYPLPVVDHKAARERALCAYKSMKE 474 >gi|91774946|ref|YP_544702.1| deoxyribodipyrimidine photo-lyase type I [Methylobacillus flagellatus KT] gi|91708933|gb|ABE48861.1| deoxyribodipyrimidine photo-lyase type I [Methylobacillus flagellatus KT] Length = 481 Score = 429 bits (1102), Expect = e-118, Method: Composition-based stats. Identities = 171/482 (35%), Positives = 254/482 (52%), Gaps = 24/482 (4%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M+ LVW R DLR D+ ALY A +S+ +V+ F+ + R+ FI+ S+ Sbjct: 1 MTKSLVWFRRDLRDYDHAALYHALKDSE-QVVCAFVFDTDILDGLPRDDRRVEFIWESVR 59 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 +++ +L ++G + E + + V ++ NR YE V+RD + ++ Sbjct: 60 ELKLALQERGGDLLVRHGK----ATEEIPALASVLGVECVYCNRDYEPAAVKRDDTVSQQ 115 Query: 127 LQ-HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPA-IRL 184 L + KSF D V+ I+ + + V+TP++ A ++ L L++ PV I Sbjct: 116 LGTQGIAFKSFKDQVIFERDEIMTKSGTPFSVFTPYKNACLRKLDDFHLKAYPVDRYIHH 175 Query: 185 TGPVTPSNIPRFFDYPFQAIDPM---FPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQG 241 P +P F + P G + + F E++ Y + RD PA++G Sbjct: 176 LAQSAPQPMPSLESLAFARSNLKQLRLPTGMSGGMALFEDF-SERMPRYRDARDFPALKG 234 Query: 242 TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSV 301 S LS +L G +S R ++ +GA +WLNEL+WR+FY ++ +P V Sbjct: 235 PSYLSVHLRFGTVSIRHLARTAWQQ-------GGAGAETWLNELLWRDFYFQVLYHHPQV 287 Query: 302 CMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFL 361 G F P E I + L +AW +G TG+P++DAAMRQ+N G+MHNRLRM+ A FL Sbjct: 288 AEGHSFKPEFEHIPFPNGESLFKAWCEGRTGYPLVDAAMRQINQTGYMHNRLRMVAAGFL 347 Query: 362 VKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQ 421 VKDLL+DWR GE YF +L+D DLA+NNGGWQWAASTG D+ P+FRIFNP Q ++FDP+ Sbjct: 348 VKDLLIDWRWGERYFAEKLIDFDLAANNGGWQWAASTGCDAQPWFRIFNPVTQSEKFDPE 407 Query: 422 GTFIRHWLPELNNVPTQYIHAPHSWLDKND------LSLNYPLPIVDHKKACHHTLNQYY 475 G FIR ++PEL + IHAP + +YP P+VDH L+ Y Sbjct: 408 GKFIRKYVPELQPCDDKEIHAPWLIPPLRQQALGLVIGKDYPAPVVDHAMRREQVLSLYR 467 Query: 476 AA 477 A Sbjct: 468 QA 469 >gi|332535427|ref|ZP_08411214.1| deoxyribodipyrimidine photolyase [Pseudoalteromonas haloplanktis ANT/505] gi|332035151|gb|EGI71663.1| deoxyribodipyrimidine photolyase [Pseudoalteromonas haloplanktis ANT/505] Length = 464 Score = 429 bits (1102), Expect = e-118, Method: Composition-based stats. Identities = 183/468 (39%), Positives = 266/468 (56%), Gaps = 9/468 (1%) Query: 10 HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69 L W R DLR+ N+AL A +N A+F + +QW+QH + Q + + +Q Sbjct: 3 TLFWFRRDLRLFSNEALIQALNNGAKH--AIFFVSEKQWQQHQAAPIQIDLLKRRVAYLQ 60 Query: 70 KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH 129 L+ GI + +F D L ++C V + N +YE+NEV RDK + Sbjct: 61 SQLADYGITLHIIEAPSFCDCTRELINFCKANDVKHVIANTEYELNEVNRDKAILHECDE 120 Query: 130 R-VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188 + ++ ++ P G++ N + +MYKV+TPF++A ++ P Sbjct: 121 LSITFTLYEGDLIAPVGTVKNQSNEMYKVFTPFKRAWLKQYQDTHFSLPQWPLTSDPIEF 180 Query: 189 TPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPY 248 S++ +P+ ++ ++ F +K+ Y +QRDIP+++GTS LSPY Sbjct: 181 DESDL-----LKSDGCSDKWPVDDETLSTVVDNFICDKLTSYDDQRDIPSVKGTSGLSPY 235 Query: 249 LSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFI 308 L++G++S +Q +++ + D+L KS F+W+NEL+WREFYRHL+A +P + G F Sbjct: 236 LALGIVSTKQLLINIQQRYPDILTTSKSKTFTWINELVWREFYRHLIAEFPKLSRGDNFN 295 Query: 309 PWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVD 368 + W K +AW +G TG+P++DAAM QL GWMHNRLRM+ ASFL K LL+D Sbjct: 296 EKYNAVVWRKSESDFKAWCEGRTGYPLVDAAMLQLKQTGWMHNRLRMVVASFLTKHLLID 355 Query: 369 WRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHW 428 WR GE +FM L+DGDLASNNGGWQWAASTG D+ PYFR+FNP Q +RFDP G FIR + Sbjct: 356 WREGERFFMQHLIDGDLASNNGGWQWAASTGCDAQPYFRVFNPIRQSERFDPTGKFIRKY 415 Query: 429 LPELNNVPTQYIHAPHSWLDKNDLSLN-YPLPIVDHKKACHHTLNQYY 475 LPEL NVP ++IH PH++L Y IVDHK A L + Sbjct: 416 LPELENVPDKHIHFPHTYLAATGKDKECYWPAIVDHKAARERALAAFK 463 >gi|301054669|ref|YP_003792880.1| deoxyribodipyrimidine photolyase [Bacillus anthracis CI] gi|300376838|gb|ADK05742.1| deoxyribodipyrimidine photolyase [Bacillus cereus biovar anthracis str. CI] Length = 476 Score = 429 bits (1102), Expect = e-118, Method: Composition-based stats. Identities = 156/481 (32%), Positives = 251/481 (52%), Gaps = 22/481 (4%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 +V + D R+ DN AL+ A + + V+ V++ I + +++ +++ V++ Sbjct: 6 IVMFQKDFRLYDNPALFEAAQSGE--VLPVYVHD----ETFSIGSASKWWLHHTIIDVKR 59 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130 L G + + E + S Q +T +++N Y+ ++ ++ ++ L+ + Sbjct: 60 QLEALGSTLIIRKGNTM----EEILSLIEQLGITAVYWNICYDPERLQFNQKMKMMLEDK 115 Query: 131 VI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAI--RLTGP 187 I CK F+ +LL P I YKV+TPF A + ++ + + L Sbjct: 116 GITCKEFNSHLLLEPWIIKKKDNTEYKVFTPFYNAFQKQVISKPISKVQSIKWGSSLPAS 175 Query: 188 VTPSNIPRFFDYPFQA-IDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246 ++ S + P+ + ++ ++ E+ A +KF K+ Y E RD P S L+ Sbjct: 176 LSVSELHLLPTIPWTSHMESIWEPTEEGAYKTFKKFFSSKLVSYSEGRDFPNQNAHSMLA 235 Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKP-KSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305 PYLS G +S + ++ L + + + S++ + IWREF +L+ YP + K Sbjct: 236 PYLSFGQISVKLIYHYLINKSNEKQCSLFEQQVNSFIRQFIWREFSYYLLYHYP-FTVYK 294 Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365 P E WN + LL+ W++G TG+P IDA MR+L G+MHNR RM ASFLVK L Sbjct: 295 PLNKNFEHFPWNNEEELLRVWQKGETGYPFIDAGMRELWQTGFMHNRARMAVASFLVKHL 354 Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425 L+ W+ G ++FM LLD D+A+N GWQW A +G D+ PYFRIFNP QG++FD G +I Sbjct: 355 LIPWQEGAKWFMDTLLDADIANNTMGWQWVAGSGADASPYFRIFNPITQGEKFDKDGEYI 414 Query: 426 RHWLPELNNVPTQYIHAPHS----WLDKNDLSLN--YPLPIVDHKKACHHTLNQYYAAKK 479 R W+PEL ++P +YIH P L K ++ L YPLP+VDHK A L Y + K+ Sbjct: 415 RKWVPELRDMPNKYIHKPWEAPEHILQKANIKLGDTYPLPVVDHKAARERALCAYKSMKE 474 Query: 480 Q 480 Sbjct: 475 S 475 >gi|226952488|ref|ZP_03822952.1| deoxyribodipyrimidine photolyase (photoreactivation) FAD-binding [Acinetobacter sp. ATCC 27244] gi|226836759|gb|EEH69142.1| deoxyribodipyrimidine photolyase (photoreactivation) FAD-binding [Acinetobacter sp. ATCC 27244] Length = 476 Score = 429 bits (1102), Expect = e-118, Method: Composition-based stats. Identities = 189/477 (39%), Positives = 268/477 (56%), Gaps = 16/477 (3%) Query: 10 HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69 L+W R DLRI D+ AL+ A +A+ I +PEQ + H + + F L Q+Q Sbjct: 6 QLIWFRQDLRIHDHAALWHATQTG--PTVALVILSPEQCQLHDDAPIKIDFYLRQLQQLQ 63 Query: 70 KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL-Q 128 +L I + D + + +++ N + +NE++RD ++K L Q Sbjct: 64 IALQSLNIPLIVQHLPLWKDITQLFADLMQNIPIQQVYANIELGVNELKRDNEVQKLLNQ 123 Query: 129 HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188 F D L P SI N + Q Y+V++ F+K Q L Q+ + PVP ++ P+ Sbjct: 124 QNKELVLFHDRTLFPVASIRNQSHQPYQVFSAFKKVCYQRLQQSLPQCYPVPDVQQ--PI 181 Query: 189 TPSNIPRFFDYP---------FQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAI 239 P D+ + +P+GE AL +L +F +++ Y RD PA Sbjct: 182 NIDPYPSLEDFKELQLKYTQQINHLTQQWPVGESYALTLLDQFIHDRLDDYKNARDFPAQ 241 Query: 240 QGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYP 299 GTSQLS YL+IG LS RQC L + + G +WL+EL+WREFY+H++ YP Sbjct: 242 AGTSQLSAYLNIGTLSIRQCLQALFRKQHGDFVIESEGQQTWLDELLWREFYQHILFDYP 301 Query: 300 SVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITAS 359 V PF T+KI W D LQ W+QG+TG PI+DA MRQL GWMHNR+RMI A Sbjct: 302 RVSKHLPFQLSTKKINWCDDPVALQQWQQGHTGIPIVDAGMRQLLATGWMHNRVRMICAM 361 Query: 360 FLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFD 419 FL K+LL+DWR GE++FM L+DGDLA+NNGGWQW ASTG D+ PYFRIFNP Q ++FD Sbjct: 362 FLSKNLLIDWRKGEQWFMQHLIDGDLAANNGGWQWCASTGTDAAPYFRIFNPISQSQKFD 421 Query: 420 PQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYA 476 P G ++R W+PEL ++ + IH P+++ K + SLNYP+PIVD K + + + Sbjct: 422 PNGDYLRQWIPELAHLDAKSIHEPYAY--KMNSSLNYPIPIVDLKSSRARAIAAFKE 476 >gi|49185961|ref|YP_029213.1| deoxyribodipyrimidine photolyase family protein [Bacillus anthracis str. Sterne] gi|65320437|ref|ZP_00393396.1| COG0415: Deoxyribodipyrimidine photolyase [Bacillus anthracis str. A2012] gi|165868433|ref|ZP_02213093.1| deoxyribodipyrimidine photolyase family protein [Bacillus anthracis str. A0488] gi|167631730|ref|ZP_02390057.1| deoxyribodipyrimidine photolyase family protein [Bacillus anthracis str. A0442] gi|167637299|ref|ZP_02395579.1| deoxyribodipyrimidine photolyase family protein [Bacillus anthracis str. A0193] gi|170684891|ref|ZP_02876116.1| deoxyribodipyrimidine photolyase family protein [Bacillus anthracis str. A0465] gi|177649852|ref|ZP_02932853.1| deoxyribodipyrimidine photolyase family protein [Bacillus anthracis str. A0174] gi|190564773|ref|ZP_03017694.1| deoxyribodipyrimidine photolyase family protein [Bacillus anthracis Tsiankovskii-I] gi|227814024|ref|YP_002814033.1| deoxyribodipyrimidine photolyase family protein [Bacillus anthracis str. CDC 684] gi|229603798|ref|YP_002867382.1| deoxyribodipyrimidine photolyase family protein [Bacillus anthracis str. A0248] gi|254685712|ref|ZP_05149571.1| deoxyribodipyrimidine photolyase family protein [Bacillus anthracis str. CNEVA-9066] gi|254723122|ref|ZP_05184910.1| deoxyribodipyrimidine photolyase family protein [Bacillus anthracis str. A1055] gi|254738183|ref|ZP_05195886.1| deoxyribodipyrimidine photolyase family protein [Bacillus anthracis str. Western North America USA6153] gi|254742647|ref|ZP_05200332.1| deoxyribodipyrimidine photolyase family protein [Bacillus anthracis str. Kruger B] gi|254752497|ref|ZP_05204533.1| deoxyribodipyrimidine photolyase family protein [Bacillus anthracis str. Vollum] gi|254761013|ref|ZP_05213037.1| deoxyribodipyrimidine photolyase family protein [Bacillus anthracis str. Australia 94] gi|270000553|ref|NP_845490.2| deoxyribodipyrimidine photolyase family protein [Bacillus anthracis str. Ames] gi|49179888|gb|AAT55264.1| deoxyribodipyrimidine photolyase family protein [Bacillus anthracis str. Sterne] gi|164715159|gb|EDR20676.1| deoxyribodipyrimidine photolyase family protein [Bacillus anthracis str. A0488] gi|167514806|gb|EDR90172.1| deoxyribodipyrimidine photolyase family protein [Bacillus anthracis str. A0193] gi|167532028|gb|EDR94664.1| deoxyribodipyrimidine photolyase family protein [Bacillus anthracis str. A0442] gi|170671151|gb|EDT21889.1| deoxyribodipyrimidine photolyase family protein [Bacillus anthracis str. A0465] gi|172083804|gb|EDT68863.1| deoxyribodipyrimidine photolyase family protein [Bacillus anthracis str. A0174] gi|190564090|gb|EDV18054.1| deoxyribodipyrimidine photolyase family protein [Bacillus anthracis Tsiankovskii-I] gi|227005678|gb|ACP15421.1| deoxyribodipyrimidine photo-lyase [Bacillus anthracis str. CDC 684] gi|229268206|gb|ACQ49843.1| deoxyribodipyrimidine photolyase family protein [Bacillus anthracis str. A0248] gi|269850227|gb|AAP26976.2| deoxyribodipyrimidine photo-lyase [Bacillus anthracis str. Ames] Length = 476 Score = 428 bits (1101), Expect = e-118, Method: Composition-based stats. Identities = 159/480 (33%), Positives = 254/480 (52%), Gaps = 22/480 (4%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 +V + D R+ DN AL+ A + + V+ V++ + + +++ +++ V+K Sbjct: 6 IVMFQKDFRLYDNPALFEAAQSGE--VVPVYVHD----ETFSMGSASKWWLHHAIIDVKK 59 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130 L G + S E + S Q +T +++N Y+ + ++ ++ ++ L+H+ Sbjct: 60 QLEALGSTLIIRKGST----QEEILSLVEQLGITAVYWNICYDPDRLQSNQKMKMMLEHK 115 Query: 131 V-ICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189 ICK F+ +LL P I YKV+TPF A + ++ + + + PV+ Sbjct: 116 GMICKEFNSHLLLEPWVIKKKDNTEYKVFTPFYNAFQKQVIHKPISKVQSIKGGNSLPVS 175 Query: 190 PS--NIPRFFDYPFQA-IDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246 S + P+ + ++ ++ E+ A ++F K+ Y E RD P S L+ Sbjct: 176 LSVSELHLLPTIPWTSHMESIWEPTEEGAYKTWKEFFSSKLASYSEGRDFPNQNAHSMLA 235 Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKP-KSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305 PYLS G +S + ++ L + + + S++ +LIWREF +L+ YP K Sbjct: 236 PYLSFGQISVKLIYHYLINKSTESQCSLFEKQVNSFIRQLIWREFSYYLLYHYPFTAY-K 294 Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365 P E WN + LL+ W++G TG+P IDA MR+L G+MHNR RM ASFLVK L Sbjct: 295 PLNKSFEHFPWNNEEELLRVWQKGDTGYPFIDAGMRELWQTGFMHNRTRMAVASFLVKHL 354 Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425 L+ W+ G ++FM LLD D+A+N GWQW A +G D+ PYFRIFNP QG++FD G +I Sbjct: 355 LIPWQEGAKWFMDTLLDADIANNTMGWQWVAGSGADASPYFRIFNPITQGEKFDKNGEYI 414 Query: 426 RHWLPELNNVPTQYIHAPHS----WLDKNDLSLN--YPLPIVDHKKACHHTLNQYYAAKK 479 R W+PEL ++P +YIH P L K ++ L YPLP+VDHK A L Y + K+ Sbjct: 415 RKWVPELKDMPNKYIHKPWEAPEHILQKANIQLGHTYPLPVVDHKAARERALCAYKSMKE 474 >gi|302035591|ref|YP_003795913.1| deoxyribodipyrimidine photolyase [Candidatus Nitrospira defluvii] gi|300603655|emb|CBK39986.1| Deoxyribodipyrimidine photolyase [Candidatus Nitrospira defluvii] Length = 481 Score = 428 bits (1101), Expect = e-118, Method: Composition-based stats. Identities = 169/481 (35%), Positives = 266/481 (55%), Gaps = 20/481 (4%) Query: 10 HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69 LVW R DLR++DN AL AAC +++ +F+ R H + F+ L +++ Sbjct: 3 GLVWFRRDLRLSDNPALSAACQEC-REIVPLFVFDEPLLRSHAFGSACVGFMLGCLEELR 61 Query: 70 KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH 129 +SL+ G+ + + ++ D + +V +++NR YE + RD+ +++RL Sbjct: 62 RSLALHGVSLAWRMGDPVESVLQAADDF----KVDAVYWNRDYEPAALERDREVQQRLAQ 117 Query: 130 RV-ICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188 + ++F D V+ + + ++ Y+ +R A L +P+ G Sbjct: 118 QGRTVRTFKDHVVFEAEEVRGLSGDPFQRYSAYRDRWWTKWRAAAPPLLGIPSFPPAGKA 177 Query: 189 TPSNIPRFF---DYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245 + + ++ D ++++ GEQ A L+ F + V+ YV R++PAI GTS+L Sbjct: 178 STPDSRKWPSVTDLGYESVPMWIEPGEQAAHARLQWFLRGPVHQYVTGRNLPAIDGTSKL 237 Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG- 304 SP+L G +S R + ++ F+W++EL+WREF++ ++A +P V G Sbjct: 238 SPHLRFGTVSARTLVHAALNALAKGGAVSRADVFTWVDELVWREFFQQVLAAFPHVAHGP 297 Query: 305 ---KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFL 361 KP +P +D L AW QG TG+PI+DA MRQLN GWMHNR+RM+ ASFL Sbjct: 298 FKAKPGLPEPRPAGPERDR-LFAAWSQGLTGYPIVDAGMRQLNQTGWMHNRVRMVVASFL 356 Query: 362 VKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQ 421 VKDL VDW+ GE YFM +L+DGDLA+NNG WQW ASTG D++ +RIFNP IQ ++FD + Sbjct: 357 VKDLRVDWQSGERYFMERLVDGDLAANNGNWQWCASTGTDAMQGYRIFNPRIQSEKFDAE 416 Query: 422 GTFIRHWLPELNNVPTQYIHAPH------SWLDKNDLSLNYPLPIVDHKKACHHTLNQYY 475 G ++R ++PEL +VPT++IH PH + +YP PIVDH++A L+ Sbjct: 417 GEYLRRYVPELKHVPTKWIHEPHLMPPLEQVQAGCRIGSDYPEPIVDHRQARQEYLDLGK 476 Query: 476 A 476 A Sbjct: 477 A 477 >gi|255318398|ref|ZP_05359631.1| deoxyribodipyrimidine photo-lyase [Acinetobacter radioresistens SK82] gi|262378628|ref|ZP_06071785.1| deoxyribodipyrimidine photolyase FAD-binding [Acinetobacter radioresistens SH164] gi|255304390|gb|EET83574.1| deoxyribodipyrimidine photo-lyase [Acinetobacter radioresistens SK82] gi|262299913|gb|EEY87825.1| deoxyribodipyrimidine photolyase FAD-binding [Acinetobacter radioresistens SH164] Length = 479 Score = 428 bits (1101), Expect = e-118, Method: Composition-based stats. Identities = 193/481 (40%), Positives = 267/481 (55%), Gaps = 15/481 (3%) Query: 7 MSV-HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASL 65 MSV LVW R DLRI D+ AL+ A IA+ +P QWRQH + + L Sbjct: 1 MSVYQLVWFRQDLRIVDHSALWHARQTG--PCIALVTLSPVQWRQHDDAVIKIDLYLRQL 58 Query: 66 LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125 +++ L Q I + + E+L C V ++ + + INE +RD+ ++ Sbjct: 59 KVLKEQLKQLNIPIIIQTIPLWKEVPEFLLECCQSLSVQQIHAHIEAGINEQQRDQDCQQ 118 Query: 126 RLQHRVICKS-FDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL 184 L I + + D L P GSI N Q Y+V+ F+KA L A + + Sbjct: 119 LLDTSGIALTLYQDRTLFPFGSITNQNGQPYQVFGAFKKACYSRLEIALPKCYTEITAQN 178 Query: 185 TGPV--------TPSNIPRFFDYPF-QAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRD 235 + T +I + D P ++I ++P E +A +L +F + + +Y +RD Sbjct: 179 PITLPALDQFQQTVPDIRQLCDIPVPESIQQLWPACENHAHTLLEQFLENHIQHYHIERD 238 Query: 236 IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLM 295 PA GTSQLS YL+IGVLS RQC L + + G WL+EL+WREFY+H++ Sbjct: 239 FPAHSGTSQLSAYLNIGVLSIRQCIQALFRHQSGYFVPEQEGQSIWLDELLWREFYQHIL 298 Query: 296 AFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRM 355 +P+V PF I W D L AW+QG TG PI+DA MRQL GWMHNR+RM Sbjct: 299 YLFPNVSKYLPFKANARNIPWQDDKTALTAWQQGQTGIPIVDAGMRQLLVTGWMHNRVRM 358 Query: 356 ITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQG 415 ITA FL K+LL+DWR GE++FM L+DGDLA+NNGGWQW ASTG DSVPYFRIFNP Q Sbjct: 359 ITAMFLCKNLLIDWRQGEQWFMQHLIDGDLAANNGGWQWCASTGTDSVPYFRIFNPVSQS 418 Query: 416 KRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYY 475 ++FDP+G +IR W+PEL ++ + IHAP+ K L+YP PIVD K + ++ + Sbjct: 419 RKFDPEGQYIRTWIPELAHLDAKTIHAPYE--SKTVQQLDYPKPIVDLKYSRARAIDHFK 476 Query: 476 A 476 Sbjct: 477 Q 477 >gi|282889865|ref|ZP_06298404.1| hypothetical protein pah_c004o286 [Parachlamydia acanthamoebae str. Hall's coccus] gi|281500439|gb|EFB42719.1| hypothetical protein pah_c004o286 [Parachlamydia acanthamoebae str. Hall's coccus] Length = 474 Score = 428 bits (1101), Expect = e-117, Method: Composition-based stats. Identities = 160/483 (33%), Positives = 249/483 (51%), Gaps = 24/483 (4%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 V +VW+R DLRI D+ AL AA VI ++I +P++ + +++ SL Sbjct: 2 AKVTIVWMRQDLRIEDHPALDAAAQRG--SVIPLYIWSPQEEGHWPLGGASKWWLHHSLK 59 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 ++ L G+ + S++ L + +F++R+YE ++RD ++ + Sbjct: 60 SLENDLRSLGLPLIIRKGK----SLDCLRDVIKETNADAVFWSRRYEPYAIKRDIQVKSK 115 Query: 127 L-QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185 L + ++ KSF +VL P SI N + ++V+T F K + S P+ Sbjct: 116 LSEEGLLAKSFPGNVLYEPWSIQNKQGKPFQVFTFFWKNCLAKEQPLAPLSAPIGVKGKI 175 Query: 186 GPVTPSNIPRFFDYPFQAIDP----MFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQG 241 V +I P + D + G A L F + + Y E+RD P + G Sbjct: 176 VEVDSLHIEDLKLLPTTSWDEGIAHTWKPGSVYAKEFLSYFLEGGAHDYNERRDRPDLPG 235 Query: 242 TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSV 301 S+LSPYL G +S R W+ + ++ A +L +L WR+F HL+ +P Sbjct: 236 VSRLSPYLHFGEISVRMVWDEIVKKL------GFQEAEPYLRQLGWRDFAYHLLYHFPKT 289 Query: 302 CMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFL 361 +P W ++ LL+ W++G TG+P +DA MRQL GWMHNR RM+ SFL Sbjct: 290 PE-EPLRQEFAYFPWKENKKLLKVWQKGMTGYPFVDAGMRQLWMTGWMHNRARMVVGSFL 348 Query: 362 VKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQ 421 VKDLL+ W+ G ++F L+D DLA+N GWQW A +G D+ PYFRIFNP QG++FDP+ Sbjct: 349 VKDLLLPWQTGAQWFWDTLVDADLANNTLGWQWVAGSGADAAPYFRIFNPITQGEKFDPE 408 Query: 422 GTFIRHWLPELNNVPTQYIHAPHS----WLDKNDLSLN--YPLPIVDHKKACHHTLNQYY 475 G+++R W+PE+ N+P ++IH P L+K + L YP PIV+H +A L + Sbjct: 409 GSYVRKWVPEIANLPDKWIHKPWEAPLDVLEKAGVKLGQTYPYPIVNHDEARLAALEAFE 468 Query: 476 AAK 478 K Sbjct: 469 EIK 471 >gi|114797406|ref|YP_760502.1| deoxyribodipyrimidine photolyase family protein [Hyphomonas neptunium ATCC 15444] gi|114737580|gb|ABI75705.1| deoxyribodipyrimidine photolyase family protein [Hyphomonas neptunium ATCC 15444] Length = 485 Score = 428 bits (1101), Expect = e-117, Method: Composition-based stats. Identities = 158/489 (32%), Positives = 244/489 (49%), Gaps = 22/489 (4%) Query: 5 TAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYAS 64 ++ S ++W R DLR+TDN AL AA NS +I V++ + ++ S Sbjct: 2 SSASPAILWFREDLRLTDNPALNAAV-NSGRPLICVYLRETGAGAPREMGGASRWWLNKS 60 Query: 65 LLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLE 124 L + SL G + + + + + +F+NR+Y + E D ++ Sbjct: 61 LASLGASLEAIGGKLTLRTGP----AEKIIPALVEETGAAAVFWNRRYGLPERETDAAIK 116 Query: 125 KRLQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIR 183 K L+ + C+SF+ +L+ P + + YKV+TPF +AL +P P Sbjct: 117 KTLKDNGVECQSFNGRLLMEPWDLKTGSGGWYKVFTPFWRALQAQYK--PPAFIPSPKKI 174 Query: 184 LTGPVTPSNIPRFFDYPFQ-----AIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPA 238 N+ + +P + I + GE A L F V YV R++P Sbjct: 175 AGASAETENLKDWGLHPEKPDWSGGIAAAWEPGEVGAQKRLDAFLDGPVSDYVGTRNLPG 234 Query: 239 IQ-GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAF 297 + GTS+LSP+L G + P Q W ++ + + A +L+E+ WREF L+ + Sbjct: 235 VSTGTSRLSPHLRFGEIGPAQIWRAVRARL-EAQQADEDSARVFLSEIAWREFSYTLLYY 293 Query: 298 YPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMIT 357 P++ + ++ W KD AW +G TG+PI+DA MR+L GWMHNR+RMI Sbjct: 294 NPALATEN-YNSNFNQMAWRKDDSGFAAWSRGQTGYPIVDAGMRELWHTGWMHNRVRMIV 352 Query: 358 ASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKR 417 ASFL K LL+ W+ GE++F L+D D A+N WQW A +G D+ PYFR+FNP QG++ Sbjct: 353 ASFLTKHLLLPWQQGEQWFWDTLVDADPAANPASWQWTAGSGADAAPYFRVFNPISQGQK 412 Query: 418 FDPQGTFIRHWLPELNNVPTQYIHAPHSW------LDKNDLSLNYPLPIVDHKKACHHTL 471 FD G ++RHW PEL +P +Y+HAP + L +YP PI+DH L Sbjct: 413 FDEDGAYVRHWCPELAGLPDKYLHAPFEADAQTLKRARVMLGTDYPEPIIDHPVGRQRAL 472 Query: 472 NQYYAAKKQ 480 + Y A K++ Sbjct: 473 DAYKAMKEE 481 >gi|229156755|ref|ZP_04284842.1| Deoxyribodipyrimidine photolyase [Bacillus cereus ATCC 4342] gi|228626675|gb|EEK83415.1| Deoxyribodipyrimidine photolyase [Bacillus cereus ATCC 4342] Length = 476 Score = 428 bits (1100), Expect = e-117, Method: Composition-based stats. Identities = 161/480 (33%), Positives = 253/480 (52%), Gaps = 22/480 (4%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 ++ + D R+ DN AL+ A + + V+ V++ I + +++ +++ VQK Sbjct: 6 IMMFQKDFRLYDNPALFEAAQSGE--VVPVYVQD----ETFSIGSASKWWLHHAIIDVQK 59 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH- 129 L G + + E + S Q +T +++N Y+ + ++ ++ ++ L+ Sbjct: 60 QLEALGSTLIIRKGNT----QEEILSLIEQLNITAVYWNSCYDPDRLKSNQKMKIVLEDK 115 Query: 130 RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPA--IRLTGP 187 +ICK F+ +LL P I YKV+TPF A + ++ + + L Sbjct: 116 GIICKEFNSHLLLEPWIIKKKDNTEYKVFTPFYNAFQKQVIPKPISKVQRIKGGSSLPAS 175 Query: 188 VTPSNIPRFFDYPFQA-IDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246 ++ S + P+ + I+ ++ E+ A +KF K+ Y E RD P S L+ Sbjct: 176 LSVSELHLLPTIPWTSHIESIWNPTEEGAYKTCKKFFFSKLASYSEGRDFPNENAHSMLA 235 Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKP-KSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305 PYLS G +S R ++ L + + + S++ +LIWREF +L+ YP + K Sbjct: 236 PYLSFGQISVRWMYHYLINKSTERQCSLFEKQVNSFIRQLIWREFSYYLLYHYP-FTVYK 294 Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365 P E WNK+ LL W++G TG+P IDA MR+L G+MHNR RM ASFLVK L Sbjct: 295 PLNKNFEHFPWNKEEELLTVWQKGETGYPFIDAGMRELWQTGFMHNRARMAVASFLVKHL 354 Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425 L+ W+ G ++FM LLD D+A+N GWQW A +G D+ PYFRIFNP QG++FD G +I Sbjct: 355 LIPWQEGAKWFMDTLLDADIANNTMGWQWVAGSGADASPYFRIFNPITQGEKFDKDGEYI 414 Query: 426 RHWLPELNNVPTQYIHAPHS----WLDKNDLSLN--YPLPIVDHKKACHHTLNQYYAAKK 479 R W+PEL ++P +YIH P L K ++ L YPLP+VDHK A L Y + K+ Sbjct: 415 RKWVPELRDMPNKYIHKPWEAPEHILQKANIKLGDTYPLPVVDHKAARERALCAYKSMKE 474 >gi|304391382|ref|ZP_07373324.1| cryptochrome-2 [Ahrensia sp. R2A130] gi|303295611|gb|EFL89969.1| cryptochrome-2 [Ahrensia sp. R2A130] Length = 480 Score = 428 bits (1100), Expect = e-117, Method: Composition-based stats. Identities = 158/487 (32%), Positives = 234/487 (48%), Gaps = 22/487 (4%) Query: 5 TAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYAS 64 + S ++W R DLR+ DN AL AA S V+AVF+ + +++ S Sbjct: 2 SKTSPIIMWFRQDLRLDDNPALIAAAE-SGKPVVAVFVFDEASEGIRKLGGAMRWWLHHS 60 Query: 65 LLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLE 124 L + K L G+ + E + + + +NR+Y E D ++ Sbjct: 61 LKSLTKDLGALGVDLILRRGP----GAEVIFDLAKEVGAENVVWNRRYGDAEQTVDATIK 116 Query: 125 KRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL 184 + KS+ ++ P ++ YKVYTPF K + + D P Sbjct: 117 GDFE--GEAKSYGGIIMHEPINVRTGTGNPYKVYTPFWKKFCEMGLPRDAHPAPQEIAGF 174 Query: 185 TGPVTPSNIPRFFDYPFQAIDP-----MFPIGEQNALHILRKFCKEKVYYYVEQRDIPAI 239 G V N+ + P + ++ GE A R F + + Y RD+P Sbjct: 175 GGDVASDNLDEWDLLPTKPDWSDGWLKVWTPGESAAQTRARAFMSDDLDVYDSARDLPGD 234 Query: 240 QGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYP 299 TS+LSP+L G +SP + W ++ L +W+ EL+WREF HL+ +P Sbjct: 235 DRTSRLSPHLRWGEISPYRLWQMAQD---GRLSAGSKARETWVKELVWREFSYHLLQEWP 291 Query: 300 SVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITAS 359 + + F + W D L+AW++G TG+PI+DA MRQL GWMHNR+RMI S Sbjct: 292 DLA-NENFNTKYDSFPWRSDDEQLRAWQKGQTGYPIVDAGMRQLWQTGWMHNRVRMIVGS 350 Query: 360 FLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFD 419 FLVK LL+DWR GE++F L+DGD ASN+ WQW A TG D+ P+FRIFNP +Q ++FD Sbjct: 351 FLVKHLLLDWRHGEDWFWDTLVDGDPASNSAQWQWVAGTGADAAPFFRIFNPIMQAEKFD 410 Query: 420 PQGTFIRHWLPELNNVPTQYIHAPHSWL------DKNDLSLNYPLPIVDHKKACHHTLNQ 473 G +I+ W+PEL +P +Y+ +P L YP PIVDHK+A L Sbjct: 411 KDGVYIKKWVPELAKLPAKYLPSPWEAPLTVLRDAGVKLGDTYPRPIVDHKEARERALAA 470 Query: 474 YYAAKKQ 480 ++ Sbjct: 471 LQEMREA 477 >gi|206974530|ref|ZP_03235446.1| deoxyribodipyrimidine photolyase family protein [Bacillus cereus H3081.97] gi|206747173|gb|EDZ58564.1| deoxyribodipyrimidine photolyase family protein [Bacillus cereus H3081.97] Length = 476 Score = 428 bits (1100), Expect = e-117, Method: Composition-based stats. Identities = 156/481 (32%), Positives = 254/481 (52%), Gaps = 22/481 (4%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 +V + D R+ DN AL+ A + + V+ +++ I + +++ +++ V++ Sbjct: 6 IVMFQKDFRLYDNPALFEAAQSGE--VLPLYVYD----ETFSIGSASKWWLHHTIIDVKR 59 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130 L G + + E + S Q +T +++N Y+ + ++ ++ ++ L+ + Sbjct: 60 QLEALGSTLIIRKGNTM----EEILSLIEQLGITAVYWNICYDPDRLQSNQKMKMMLEDK 115 Query: 131 VI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAI--RLTGP 187 I CK F+ +LL P I YKV+TPF A + ++ + + L Sbjct: 116 GITCKEFNSHLLLEPWIIKKKDNTEYKVFTPFYNAFQKQVISKPISKVQSIKWGSSLPAS 175 Query: 188 VTPSNIPRFFDYPFQA-IDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246 ++ S + P+ + ++ ++ E+ A +KF K+ Y E RD P S L+ Sbjct: 176 LSVSELHLLPTIPWTSHMESIWEPTEEGAYKTCKKFFSSKLVSYSEGRDFPNQNAHSMLA 235 Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKP-KSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305 PYLS G +S + ++ L + + + S++ +LIWREF +L+ YP + K Sbjct: 236 PYLSFGQISVKLMYHYLINKSNEKQCSLFEKQVNSFIRQLIWREFSYYLLYHYP-FTVYK 294 Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365 P E W+K+ LL+ W++G TG+P IDA MR+L G+MHNR RM ASFLVK L Sbjct: 295 PLNKSFENFPWDKEEELLRVWQKGKTGYPFIDAGMRELWQTGFMHNRARMAVASFLVKHL 354 Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425 L+ W+ G ++FM LLD D+A+N GWQW A +G D+ PYFRIFNP QG++FD G +I Sbjct: 355 LIPWQEGAKWFMDTLLDADIANNTMGWQWVAGSGADASPYFRIFNPITQGEKFDKNGEYI 414 Query: 426 RHWLPELNNVPTQYIHAPHS----WLDKNDLSLN--YPLPIVDHKKACHHTLNQYYAAKK 479 R W+PEL ++P +YIH P L K ++ L YPLP+VDHK A L Y + K+ Sbjct: 415 RRWVPELRDIPNKYIHKPWEAPEHILQKANIKLGDTYPLPVVDHKAARERALCAYKSMKE 474 Query: 480 Q 480 Sbjct: 475 S 475 >gi|326484060|gb|EGE08070.1| deoxyribodipyrimidine photo-lyase [Trichophyton equinum CBS 127.97] Length = 589 Score = 428 bits (1100), Expect = e-117, Method: Composition-based stats. Identities = 177/490 (36%), Positives = 257/490 (52%), Gaps = 19/490 (3%) Query: 11 LVWLRNDLRITDNKALYAA---CHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67 + W + DLR+ DN++L+ A + + +I ++I +PE H S + I +L Sbjct: 100 VHWFKQDLRLQDNRSLHRAYSFARDHNIPLICLYIFSPEDLTAHLCSPPRVDLILRALAT 159 Query: 68 VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127 ++ LS+ I + C +LF N +YE++E+RR+ L + Sbjct: 160 LKSELSKNDIPLYMESIERRKGVPSRIVELCKTWGANQLFANIEYEVDELRREANLVRLC 219 Query: 128 QHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQAD--LRSLPVPAIRL 184 + I + DD+ ++ PG + + Y VYTP+ ++ + L Q L + PA+ Sbjct: 220 AKQGIRFYTEDDTCVVTPGELTTQQGKQYAVYTPWYRSWVAYLKQHPENLELVDAPAVNA 279 Query: 185 TGP------------VTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVE 232 T N + F + M+P GEQ A LR+F +K Y Sbjct: 280 GDARNHFKDLFDSAVPTAPNQMKLFGAEQERFKKMYPEGEQEATRRLREFLSKKGKQYHA 339 Query: 233 QRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYR 292 +RD + Q TS LSPY S G LS R ++ + L G +W++E+ WR+FY+ Sbjct: 340 KRDSMSSQFTSVLSPYFSCGALSARTAVRMARDANGNELAGKSPGYSTWISEVAWRDFYK 399 Query: 293 HLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNR 352 H++ +P +CM K F P +EW D AW +G TGFPI+DAAMRQL WMHNR Sbjct: 400 HVLTNWPYICMNKCFKPEFTDLEWEYDPTKFDAWCEGKTGFPIVDAAMRQLKHCAWMHNR 459 Query: 353 LRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPT 412 RMI +SFL KDLL+DWR GE++FM L+DGD ASN+GGW + +STG D PYFRIFNP Sbjct: 460 TRMIVSSFLSKDLLIDWRRGEQFFMLHLIDGDFASNHGGWGFGSSTGVDPQPYFRIFNPL 519 Query: 413 IQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLN-YPLPIVDHKKACHHTL 471 Q +RFDP G +IRHW+PEL +V IH P+ + N YP PIV+H ++ L Sbjct: 520 RQSERFDPDGEYIRHWVPELRDVEGSAIHDPYGRGAEKIAEKNGYPRPIVNHTESRERAL 579 Query: 472 NQYYAAKKQS 481 +Y A + S Sbjct: 580 AKYKKAAQGS 589 >gi|118478461|ref|YP_895612.1| deoxyribodipyrimidine photo-lyase type I [Bacillus thuringiensis str. Al Hakam] gi|196042568|ref|ZP_03109807.1| deoxyribodipyrimidine photolyase family protein [Bacillus cereus 03BB108] gi|118417686|gb|ABK86105.1| deoxyribodipyrimidine photo-lyase type I [Bacillus thuringiensis str. Al Hakam] gi|196026052|gb|EDX64720.1| deoxyribodipyrimidine photolyase family protein [Bacillus cereus 03BB108] Length = 476 Score = 428 bits (1100), Expect = e-117, Method: Composition-based stats. Identities = 157/480 (32%), Positives = 252/480 (52%), Gaps = 22/480 (4%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 +V + D R+ DN AL+ A + + V+ V++ I + +++ +++ V+K Sbjct: 6 IVMFQKDFRLYDNPALFEAAQSGE--VVPVYVHD----ETFSIGSASKWWLHHAIIDVKK 59 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130 L G + S E + S Q +T +++N Y+ + ++ ++ ++ L+ + Sbjct: 60 QLEALGSTLIIRKGSTE----EEILSLIEQLGITAVYWNICYDPDRLQFNQKMKMMLEDK 115 Query: 131 V-ICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPA--IRLTGP 187 ICK F+ +LL P I YKV+TPF A + ++ + + L Sbjct: 116 GMICKEFNSHLLLEPWVIKKKDNTEYKVFTPFYNAFQKQVIHKPISKVQSIKGGNSLPSS 175 Query: 188 VTPSNIPRFFDYPFQA-IDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246 ++ S + P+ + ++ ++ E+ A +KF K+ Y E RD P S L+ Sbjct: 176 LSVSELHLLPTIPWTSHMESIWEPTEEGAYKTCKKFFSSKLASYSEGRDFPNQNAHSMLA 235 Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKP-KSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305 PYLS G +S + ++ L + + + S++ +LIWREF +++ YP K Sbjct: 236 PYLSFGQISVKLIYHYLINKSTESQCSLFEKQVNSFIRQLIWREFSYYMLYHYPFTAY-K 294 Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365 P E WN + LL+ W++G TG+P IDA MR+L G+MHNR RM ASFL+K L Sbjct: 295 PLNKSFEHFPWNNEKELLRVWQKGETGYPFIDAGMRELWQTGFMHNRTRMAVASFLIKHL 354 Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425 L+ W+ G ++FM LLD D+A+N GWQW A +G D+ PYFRIFNP QG++FD G +I Sbjct: 355 LIPWQEGAKWFMDTLLDADIANNTMGWQWVAGSGADASPYFRIFNPITQGEKFDKNGEYI 414 Query: 426 RHWLPELNNVPTQYIHAPHS----WLDKNDLSLN--YPLPIVDHKKACHHTLNQYYAAKK 479 R W+PEL ++P +YIH P L K ++ L YPLP+VDHK A L Y + K+ Sbjct: 415 RKWVPELKDMPNKYIHKPWEAPEHILQKANIQLGHTYPLPVVDHKAARERALCAYKSMKE 474 >gi|196037804|ref|ZP_03105114.1| deoxyribodipyrimidine photo-lyase [Bacillus cereus NVH0597-99] gi|196031074|gb|EDX69671.1| deoxyribodipyrimidine photo-lyase [Bacillus cereus NVH0597-99] Length = 476 Score = 428 bits (1100), Expect = e-117, Method: Composition-based stats. Identities = 158/480 (32%), Positives = 253/480 (52%), Gaps = 22/480 (4%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 +V + D R+ DN AL+ A + + V+ V++ + + +++ +++ V+K Sbjct: 6 IVMFQKDFRLYDNPALFEAAQSGE--VVPVYVHD----ETFSMGSASKWWLHHAIIDVKK 59 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130 L G + S E + S Q +T +++N Y+ + ++ ++ ++ L+ + Sbjct: 60 QLEALGSTLIIRKGST----QEEILSLVEQLGITAVYWNICYDPDRLQSNQKMKMMLEDK 115 Query: 131 V-ICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189 ICK F+ +LL P I YKV+TPF A + ++ + + + PV+ Sbjct: 116 GMICKEFNSHLLLEPWIIKKKDNTEYKVFTPFYNAFQKQVIHKPISKVQSIKGGNSLPVS 175 Query: 190 PS--NIPRFFDYPFQA-IDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246 S + P+ + ++ ++ E+ A ++F K+ Y E RD P S L+ Sbjct: 176 LSVSELHLLPTIPWTSHMESIWEPTEEGAYKTWKEFFSSKLASYSEGRDFPNQNAHSMLA 235 Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKP-KSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305 PYLS G +S + ++ L + + + S++ +LIWREF +L+ YP K Sbjct: 236 PYLSFGQISVKLIYHYLINKSTESQCSLFEKQVNSFIRQLIWREFSYYLLYHYPFTAY-K 294 Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365 P E WN + LL+ W++G TG+P IDA MR+L G+MHNR RM ASFLVK L Sbjct: 295 PLNKSFEHFPWNNEEELLRVWQKGDTGYPFIDAGMRELWQTGFMHNRTRMAVASFLVKHL 354 Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425 L+ W+ G ++FM LLD D+A+N GWQW A +G D+ PYFRIFNP QG++FD G +I Sbjct: 355 LIPWQEGAKWFMDTLLDADIANNTMGWQWVAGSGADASPYFRIFNPITQGEKFDKNGEYI 414 Query: 426 RHWLPELNNVPTQYIHAPHS----WLDKNDLSLN--YPLPIVDHKKACHHTLNQYYAAKK 479 R W+PEL ++P +YIH P L K ++ L YPLP+VDHK A L Y + K+ Sbjct: 415 RKWVPELKDMPNKYIHKPWEAPEHILQKANIQLGHTYPLPVVDHKAARERALCAYKSMKE 474 >gi|229179435|ref|ZP_04306788.1| Deoxyribodipyrimidine photolyase [Bacillus cereus 172560W] gi|228603936|gb|EEK61404.1| Deoxyribodipyrimidine photolyase [Bacillus cereus 172560W] Length = 476 Score = 427 bits (1099), Expect = e-117, Method: Composition-based stats. Identities = 160/480 (33%), Positives = 254/480 (52%), Gaps = 22/480 (4%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 +V + D R+ DN AL+ A + + V+ V++ I + +++ +++ VQK Sbjct: 6 IVMFQKDFRLYDNPALFEAVQSGE--VLPVYVQD----ETFSIGSAAKWWLHHAIIDVQK 59 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH- 129 L G + + E + S Q +T +++N Y+ + ++ ++ ++ L+ Sbjct: 60 QLKALGSTLIIRKGNT----QEEILSLIKQLDITAVYWNSCYDPDRLKSNQKMKMILEDK 115 Query: 130 RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAI--RLTGP 187 +ICK F+ +LL P I YKV+TPF A + ++ + + L Sbjct: 116 GIICKEFNSHLLLEPWIIKKKDNTEYKVFTPFYNAFQKQVIPKPISRVQSIKWGSSLPAS 175 Query: 188 VTPSNIPRFFDYPFQA-IDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246 ++ S + P+ + ++ ++ E+ A +KF K+ Y E RD P S L+ Sbjct: 176 LSVSELHLLPTIPWTSHMEAIWEPTEEGAYKTFKKFFSSKLASYSEGRDFPNQNAHSMLA 235 Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKP-KSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305 PYLS G +S + ++ L + + + S++ +LIWREF +L+ YP + K Sbjct: 236 PYLSFGQISVKLMYHYLINKSTERQCSFFEKQVISFIRQLIWREFSYYLLYHYP-FTVYK 294 Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365 P E WNK+ LL+ W++G TG+P IDA MR+L G+MHNR RM ASFLVK L Sbjct: 295 PLNKNFEHFPWNKEEELLRVWQKGETGYPFIDAGMRELWQTGFMHNRARMAVASFLVKHL 354 Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425 L+ W+ G ++FM LLD D+A+N GWQW A +G D+ PYFRIFNP QG++FD G +I Sbjct: 355 LIPWQEGAKWFMDTLLDADIANNTMGWQWVAGSGADASPYFRIFNPITQGEKFDKNGEYI 414 Query: 426 RHWLPELNNVPTQYIHAPHS----WLDKNDLSLN--YPLPIVDHKKACHHTLNQYYAAKK 479 R W+PEL ++P +YIH P L K+++ L YP PIVDHK A L Y + K+ Sbjct: 415 RRWVPELRDIPNKYIHKPWEAPEHILQKSNIKLGNTYPYPIVDHKAARERALCAYKSMKE 474 >gi|59713936|ref|YP_206711.1| deoxyribodipyrimidine photolyase Phr, FAD-binding [Vibrio fischeri ES114] gi|59482184|gb|AAW87823.1| deoxyribodipyrimidine photolyase Phr, FAD-binding [Vibrio fischeri ES114] Length = 479 Score = 427 bits (1099), Expect = e-117, Method: Composition-based stats. Identities = 205/472 (43%), Positives = 270/472 (57%), Gaps = 11/472 (2%) Query: 12 VWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQKS 71 VW R+DLR DN AL AA N A+FI + QW++H + Q I L++++ Sbjct: 10 VWFRHDLRTIDNPALQAAVDN-QQPTFALFIYSESQWKKHNKAPIQIDLIKRRLVELKNE 68 Query: 72 LSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHRV 131 L Q I F + + + + V LF N++YE +E RD + + L Sbjct: 69 LEQLNIPLIVISSPLFSEIPAKITALFNELSVNALFANKEYEHDERLRDTQVYESL-LNT 127 Query: 132 ICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPS 191 C FD +LP G+I+N Q YKV+TPF+KA + Q L P Sbjct: 128 NCYFFDAKCILPVGTIINRTQQPYKVFTPFKKAWKASFYQQQPHITKTGKSVLCDPKLIK 187 Query: 192 NIPRFFDYPFQAIDP----MFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSP 247 + D F +P+ + + ILR+FC++KV Y RD P IQGTSQLSP Sbjct: 188 KLSLNNDDSFVFSSSNESGSWPVSTKAIIDILRQFCRQKVSQYHNNRDYPEIQGTSQLSP 247 Query: 248 YLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPF 307 YL+IG +S +QC RL ++ + G WL+ELIWREFY HL+ FYP++ + F Sbjct: 248 YLAIGAISAKQCALRLH---LEANYELNQGEDIWLDELIWREFYTHLLHFYPNLSKNQAF 304 Query: 308 IPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLV 367 + + + IEW+ + + W +G TGFPI+DAAM+QLNT GWMHNRLRMITASFLVKDL + Sbjct: 305 LSYDKYIEWDNNLDHFERWCKGETGFPIVDAAMKQLNTTGWMHNRLRMITASFLVKDLHI 364 Query: 368 DWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRH 427 DWR GE+YFMS+L+DGD ASNNGGWQW AS G DS PYFRIFNP QGK+FD TFI+H Sbjct: 365 DWRWGEQYFMSKLIDGDFASNNGGWQWCASVGCDSSPYFRIFNPITQGKKFDADCTFIKH 424 Query: 428 WLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479 WLPEL + + IH P+ S NYP IVDH + + Y AK+ Sbjct: 425 WLPELKALSNKEIHHPN--PAPLLKSDNYPDQIVDHAQQRIKVIEVYKQAKQ 474 >gi|56460496|ref|YP_155777.1| deoxyribodipyrimidine photolyase [Idiomarina loihiensis L2TR] gi|56179506|gb|AAV82228.1| Deoxyribodipyrimidine photolyase [Idiomarina loihiensis L2TR] Length = 468 Score = 427 bits (1099), Expect = e-117, Method: Composition-based stats. Identities = 191/469 (40%), Positives = 262/469 (55%), Gaps = 9/469 (1%) Query: 12 VWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQKS 71 +W R+DLRI DN A+++ACH D +A+F E W+ H + + FI+ +L +Q+ Sbjct: 5 IWFRSDLRILDNPAVFSACH-GDEPPLAIFFVCHETWKSHDWAPIKVDFIWRNLECLQQD 63 Query: 72 LSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR- 130 L++KGI Q F L S+C + ++ ++ N +Y ++E RRD L + Sbjct: 64 LAEKGIELQVQLVPKFSQVPGALRSFCRENKIARVHINAEYALDEKRRDAATNAVLSNDD 123 Query: 131 VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTP 190 + S ++L+ PG + YK +TPF + Q L + + Sbjct: 124 IELVSHHGNLLVSPGEVRTQQGDYYKKFTPFNRRWRQVLSEK-----TYSEPLQIKSYSR 178 Query: 191 SNIPRFFDYPFQAIDPM-FPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYL 249 + P D + GEQ L L +F V Y + RD+PA GTSQLS YL Sbjct: 179 VTAKGLPECPLGRKDSSDWSAGEQQVLGKLGQFVGHSVDDYQQARDLPAENGTSQLSAYL 238 Query: 250 SIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIP 309 + GV+ P+ L + + SGA +WL EL WREFY+HLM F P + G+ F Sbjct: 239 AQGVIGPQTAVRALHKFSPEFPFGLASGADTWLTELAWREFYQHLMYFVPRLSKGESFQS 298 Query: 310 WTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDW 369 T+ I+W +D Q W G TG+PI+DA MRQL + GWMHNRLRMITA+FLVKDLLVDW Sbjct: 299 ETDSIQWLEDDDAFQRWCDGRTGYPIVDAGMRQLTSTGWMHNRLRMITANFLVKDLLVDW 358 Query: 370 RIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWL 429 R GE +FM L+DG +NNGGWQW+AS G D+VPYFR+FNP Q ++FDP G +IR W+ Sbjct: 359 RKGEAFFMQHLIDGSFPANNGGWQWSASVGTDAVPYFRVFNPVKQSEKFDPDGQYIRKWV 418 Query: 430 PELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478 EL VPT+YIH PHSWL + S NY P+V+HK A L + K Sbjct: 419 EELKEVPTKYIHWPHSWLQQQS-SNNYCDPMVEHKFARERFLTTFKQVK 466 >gi|262372026|ref|ZP_06065305.1| deoxyribodipyrimidine photolyase FAD-binding [Acinetobacter junii SH205] gi|262312051|gb|EEY93136.1| deoxyribodipyrimidine photolyase FAD-binding [Acinetobacter junii SH205] Length = 480 Score = 427 bits (1098), Expect = e-117, Method: Composition-based stats. Identities = 177/480 (36%), Positives = 267/480 (55%), Gaps = 14/480 (2%) Query: 8 SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67 + L+W R DLR+ D AL+ A N IA+ I +PEQW++H + + F LL+ Sbjct: 4 TYQLIWFRQDLRVRDQAALWHARQNG--PCIAICILSPEQWQRHDDADIKIDFYLRQLLE 61 Query: 68 VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127 ++ LS+ I +DD E+ + ++ N ++ NE++RD +++ L Sbjct: 62 LKTELSKLQIPLLIFTVPLWDDIAEFFVDLAEKLPFENVYANIEFGFNELKRDNEVQQSL 121 Query: 128 -QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 + + F D L P SI + Y+V+ F+K+ Q L + P+P + T Sbjct: 122 NRQKKQLILFQDRTLFPVASIRTQSNLPYQVFGAFKKSCYQRLELGLPQCYPIPETQATL 181 Query: 187 PVTPSNIPR---------FFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIP 237 + + + D + +GE++A ++L +F ++++ Y RD P Sbjct: 182 EFDFCQLHQTDLQNIQNHYADKIKDKNASEWRVGEKHARNLLNQFVEKRIIQYNALRDYP 241 Query: 238 AIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAF 297 +++GTSQLS YL+IG++S RQC + G +WLNEL+WREFY+H++ Sbjct: 242 SVKGTSQLSAYLNIGIISIRQCIQAAFRHQQGDFVIQSEGQQTWLNELLWREFYQHILFD 301 Query: 298 YPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMIT 357 +P V PF T+ ++W DS + WK+G TG PI+DA MRQL + GWMHNR+RMI Sbjct: 302 FPQVSKHLPFKAATQNVQWRDDSEGFEKWKRGQTGIPIVDAGMRQLLSTGWMHNRVRMIC 361 Query: 358 ASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKR 417 A FL K+LL+DWR GE++FM L+DGDLA+NNGGWQW ASTG D+ PYFRIFNP Q ++ Sbjct: 362 AMFLTKNLLIDWRKGEQWFMQNLIDGDLAANNGGWQWCASTGTDAAPYFRIFNPISQSQK 421 Query: 418 FDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477 FD G +IR W+PEL + + IH P++ L L+YP PIVD K + + + A Sbjct: 422 FDENGVYIRRWVPELTQLDAKRIHEPYA--QNTALKLDYPHPIVDLKTSRERAIQAFQAL 479 >gi|327305599|ref|XP_003237491.1| deoxyribodipyrimidine photo-lyase [Trichophyton rubrum CBS 118892] gi|326460489|gb|EGD85942.1| deoxyribodipyrimidine photo-lyase [Trichophyton rubrum CBS 118892] Length = 589 Score = 427 bits (1098), Expect = e-117, Method: Composition-based stats. Identities = 174/486 (35%), Positives = 255/486 (52%), Gaps = 19/486 (3%) Query: 11 LVWLRNDLRITDNKALYAA---CHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67 + W + DLR+ DN++L+ A + +I ++I +PE H S + I +L+ Sbjct: 100 VHWFKQDLRLQDNRSLHRAYSFARYHNIPLICLYIFSPEDLTAHLCSPPRVDLILRTLVT 159 Query: 68 VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127 ++ LS+K I + C LF N +YE++E+RR+ L + Sbjct: 160 LKSELSRKDIPLYMESIERRKGIPSRIVELCKTWGANHLFANIEYEVDELRREAKLTRLC 219 Query: 128 QHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQAD--LRSLPVPAIRL 184 + I + DD+ ++ PG + + Y VY+P+ ++ + L Q L + PA+ Sbjct: 220 ATQGIRFDTEDDTCVVAPGELTTQQGKQYAVYSPWYRSWVAYLKQHPENLELVDAPAVNA 279 Query: 185 ------------TGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVE 232 + N + + + M+P GEQ A LR+F +K Y Sbjct: 280 GNARKHFKNLFDSAVPIAPNQMKLSEAEQERFKKMYPEGEQEAARRLREFLSKKGKQYHA 339 Query: 233 QRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYR 292 +RD + Q TS LSPY S G LS R ++ + L G +W++E+ WR+FY+ Sbjct: 340 KRDFMSSQFTSVLSPYFSCGALSARTAVRMARDANGNELAGKSPGYSTWISEVAWRDFYK 399 Query: 293 HLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNR 352 H++ +P +CM K F P +EW DS AW +G TGFPI+DAAMRQL WMHNR Sbjct: 400 HVLTHWPYICMNKCFKPEFTDLEWEYDSTQFDAWCEGKTGFPIVDAAMRQLKHCAWMHNR 459 Query: 353 LRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPT 412 RMI +SFL KDLL+DWR GE++FM L+DGD ASN+GGW + +STG D PYFRIFNP Sbjct: 460 TRMIVSSFLSKDLLIDWRCGEQFFMLHLIDGDFASNHGGWGFGSSTGVDPQPYFRIFNPL 519 Query: 413 IQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLN-YPLPIVDHKKACHHTL 471 Q +RFDP G +IR+W+PEL +V IH P+ N YP PIV+H ++ L Sbjct: 520 RQSERFDPDGDYIRYWVPELRDVEGSAIHDPYGRGAGGIAEKNGYPKPIVNHTESRERAL 579 Query: 472 NQYYAA 477 +Y A Sbjct: 580 EKYKKA 585 >gi|154296018|ref|XP_001548442.1| hypothetical protein BC1G_13162 [Botryotinia fuckeliana B05.10] gi|150843814|gb|EDN19007.1| hypothetical protein BC1G_13162 [Botryotinia fuckeliana B05.10] Length = 607 Score = 427 bits (1098), Expect = e-117, Method: Composition-based stats. Identities = 164/487 (33%), Positives = 248/487 (50%), Gaps = 21/487 (4%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAV---FIATPEQWRQHGISARQSHFIYASLLQ 67 + W + DLR DN AL A + I + +I +P+ + H + + FI +L Sbjct: 114 VHWFKCDLRTKDNTALSMASQKAKELGIPLVTMYIVSPQDFEAHLTAPVRVDFILRTLDI 173 Query: 68 VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127 ++K L++ I + + + + N +YE++E+RR+ + + Sbjct: 174 LKKDLAKLDIPLYVETIDKRKRVESRILELLGEWGCSHFYANMEYEVDELRREARMVRAC 233 Query: 128 QHRVICKSF-DDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQAD--------LRSLP 178 + IC D+ ++ PG + + + Y VYTP+ K+ + + + P Sbjct: 234 VEKGICMDVIHDTCVVRPGELKSGQGKQYAVYTPWFKSWVAYVHENSDLLELFDAPEKNP 293 Query: 179 VPAIRLTGPVTPSNIP------RFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVE 232 A + + + IP + M+P GE A L KF EK+ Y + Sbjct: 294 SSARKTFAKLFETEIPDAPKNKSLTSEEKERFRSMWPAGEHAAHERLSKFADEKINKYQD 353 Query: 233 QRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFV-DLLIKPKSGAFSWLNELIWREFY 291 R+ P++ TS LS + + G LS R ++ L G +W++E+ WR+FY Sbjct: 354 HRNFPSLNSTSSLSVHFASGTLSSRTAIRTARDHNNTKKLNAGYQGIQTWISEVAWRDFY 413 Query: 292 RHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHN 351 +H++ +P VCM KPF P IEW + QAW +G TG+PI+DAAMRQLN G+MHN Sbjct: 414 KHVLVHWPYVCMNKPFKPEYTNIEWEYNRAHFQAWTEGRTGYPIVDAAMRQLNHCGYMHN 473 Query: 352 RLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNP 411 R RMI SFL K LL+DWR+GE YFM L+DGD ASNNGGW + ASTG D PYFRIFNP Sbjct: 474 RSRMIVGSFLAKHLLLDWRMGERYFMEHLIDGDFASNNGGWGFCASTGVDPQPYFRIFNP 533 Query: 412 TIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSL--NYPLPIVDHKKACHH 469 +Q ++FD +G +IR W+ EL V + IH P+ + ++ YP IV+HK + Sbjct: 534 LLQSEKFDAEGEYIRKWVEELKGVKGKAIHEPYGDKEAAKIAKKSGYPERIVEHKVSRER 593 Query: 470 TLNQYYA 476 L +Y Sbjct: 594 CLKRYKE 600 >gi|228986230|ref|ZP_04146370.1| Deoxyribodipyrimidine photolyase [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|228773492|gb|EEM21918.1| Deoxyribodipyrimidine photolyase [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] Length = 476 Score = 427 bits (1097), Expect = e-117, Method: Composition-based stats. Identities = 155/481 (32%), Positives = 252/481 (52%), Gaps = 22/481 (4%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 +V + D R+ DN AL+ A + + V+ +++ I + +++ +++ V++ Sbjct: 6 IVMFQKDFRLYDNPALFEAAQSGE--VLPLYVYD----ETFSIGSASKWWLHHTIIDVKR 59 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH- 129 L G + + E + S Q +T +++N Y+ + ++ ++ ++ L+ Sbjct: 60 QLEALGSTLIIRKGNTM----EEILSLIEQLGMTAVYWNICYDPDRLQSNQKMKMMLEDK 115 Query: 130 RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAI--RLTGP 187 +ICK F+ +LL P I YKV+TPF A + ++ + + L Sbjct: 116 GIICKEFNSHLLLEPWIIKKKDNTEYKVFTPFYHAFQKQVISKPISKVQSIKWGSSLPAS 175 Query: 188 VTPSNIPRFFDYPFQA-IDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246 ++ S + P+ + ++ ++ E+ A +KF K+ Y E RD P S L+ Sbjct: 176 LSVSELHLLPTIPWTSHMESIWEPTEEGAYKTFKKFFSSKLVSYSEGRDFPNQNAHSMLA 235 Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKP-KSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305 PYLS G +S + ++ L + + + S++ + IWREF +L+ YP + K Sbjct: 236 PYLSFGQISVKLIYHYLINKSNEKQCSLFEQQVNSFIRQFIWREFSYYLLYHYP-FTVYK 294 Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365 P E WN + LL+ W++G TG+P IDA MR+L G+MHNR RM ASFLVK L Sbjct: 295 PLNKNFEHFPWNNEEELLRVWQKGETGYPFIDAGMRELWQTGFMHNRARMAVASFLVKHL 354 Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425 L+ W+ G ++FM LLD D+A+N GWQW A +G D+ PYFRIFNP QG++FD G +I Sbjct: 355 LIPWQEGAKWFMDTLLDADIANNTMGWQWVAGSGADASPYFRIFNPITQGEKFDKDGEYI 414 Query: 426 RHWLPELNNVPTQYIHAPHS----WLDKNDLSLN--YPLPIVDHKKACHHTLNQYYAAKK 479 R W+PEL ++P +YIH P L K ++ L YPLP+VDHK A L Y + K+ Sbjct: 415 RKWVPELRDIPNKYIHKPWEAPEHILQKANIKLGDTYPLPVVDHKAARERALCAYKSMKE 474 Query: 480 Q 480 Sbjct: 475 S 475 >gi|83770999|dbj|BAE61131.1| unnamed protein product [Aspergillus oryzae] Length = 624 Score = 426 bits (1096), Expect = e-117, Method: Composition-based stats. Identities = 172/486 (35%), Positives = 255/486 (52%), Gaps = 19/486 (3%) Query: 11 LVWLRNDLRITDNKALYAA---CHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67 + W ++DLR+ DN+AL A +IA++I +PE H S + +L Q Sbjct: 133 VHWFKSDLRLHDNRALRKAYEVAREHSIPLIALYILSPEDLTAHLSSPARVDLTLRTLEQ 192 Query: 68 VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127 ++ L + I + D + + C + LF N +YE++E+RR+ L + Sbjct: 193 LKLDLGELDIPLHMETQESRRDIPQRIIHLCQEWGANHLFANIEYEVDELRREAKLVRLC 252 Query: 128 -QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQAD--------LRSLP 178 ++ + D+ ++PPG + + + Y VY+P+ ++ L+ S P Sbjct: 253 VENGIAFDVLHDTCVVPPGLLSSQQGKQYAVYSPWFRSWQMFLMDNPEHLEVSEEPGSNP 312 Query: 179 VPAIRLTGPVTPS------NIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVE 232 A ++ + S N R D + ++P GE L L F +EK Y + Sbjct: 313 GNARKVFKDLFASEVPGAPNNKRLSDEEREHFRQLYPAGEHEGLDRLESFLEEKATAYDD 372 Query: 233 QRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYR 292 R+ + Q TS LSPY + G LS R + K+ + L + + G SW++E+ WR+FY+ Sbjct: 373 MRNSLSKQTTSVLSPYFASGSLSARTAVAKAKKANKNQLDRNELGFVSWISEVAWRDFYK 432 Query: 293 HLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNR 352 H++ +P +CM K F P +EW + AW +G TGFPI+DAAMRQ+ + WMHNR Sbjct: 433 HVLVRWPFICMNKCFKPEFTDLEWEYNMDYFNAWCEGRTGFPIVDAAMRQMKSSAWMHNR 492 Query: 353 LRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPT 412 RMI ASFL KDLL+DWR GE YFM L+DGD ASN+GGW + +STG D PYFRIF+P Sbjct: 493 SRMIVASFLSKDLLIDWRRGERYFMEHLIDGDFASNHGGWGFGSSTGVDPQPYFRIFSPL 552 Query: 413 IQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLN-YPLPIVDHKKACHHTL 471 Q +RFDP G +IR W+PEL + IH P+ + N YP PIVDH L Sbjct: 553 RQSERFDPDGDYIRRWVPELREIEGSAIHDPYDRGAGDLAEKNGYPRPIVDHATRRALAL 612 Query: 472 NQYYAA 477 ++Y A Sbjct: 613 DRYKKA 618 >gi|229185362|ref|ZP_04312545.1| Deoxyribodipyrimidine photolyase [Bacillus cereus BGSC 6E1] gi|228598095|gb|EEK55732.1| Deoxyribodipyrimidine photolyase [Bacillus cereus BGSC 6E1] Length = 476 Score = 426 bits (1096), Expect = e-117, Method: Composition-based stats. Identities = 157/480 (32%), Positives = 252/480 (52%), Gaps = 22/480 (4%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 +V + D R+ DN AL+ A + + V+ V++ I + +++ +++ V+K Sbjct: 6 IVMFQKDFRLYDNPALFEAAQSGE--VVPVYVHD----ETFSIGSASKWWLHHAIIDVKK 59 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130 L G + S E + S Q +T +++N Y+ + ++ ++ ++ L+ + Sbjct: 60 QLEALGSTLIIRKGSTE----EEILSLIEQLGITAVYWNICYDPDRLQFNQKMKMMLEDK 115 Query: 131 V-ICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPA--IRLTGP 187 ICK F+ +LL P I YKV+TPF A + ++ + + L Sbjct: 116 GMICKEFNSHLLLEPWVIKKKDNTEYKVFTPFYNAFQKQVIHKPISKVQSIKGGNSLPSS 175 Query: 188 VTPSNIPRFFDYPFQA-IDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246 ++ S + P+ + ++ ++ E+ A +KF K+ Y E RD P S L+ Sbjct: 176 LSVSELHLLPTIPWTSHMESIWEPTEEGAYKTCKKFFSSKLASYSEGRDFPNQNAHSMLA 235 Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKP-KSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305 PYLS G +S + ++ L + + + S++ +LIWREF +++ YP K Sbjct: 236 PYLSFGQISVKLIYHYLINKSTESQCSLFEKQVNSFIRQLIWREFSYYMLYHYPFTAY-K 294 Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365 P E WN + LL+ W++G TG+P IDA MR+L G+MHNR RM ASFL+K L Sbjct: 295 PLNKSFEHFPWNNEKELLRVWQKGETGYPFIDAGMRELWQTGFMHNRTRMAVASFLIKHL 354 Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425 L+ W+ G ++FM LLD D+A+N GWQW A +G D+ PYFRIFNP QG++FD G +I Sbjct: 355 LIPWQEGAKWFMDTLLDADIANNTMGWQWVAGSGADASPYFRIFNPITQGEKFDKNGEYI 414 Query: 426 RHWLPELNNVPTQYIHAPHS----WLDKNDLSLN--YPLPIVDHKKACHHTLNQYYAAKK 479 R W+PEL ++P +YIH P L K ++ L YPLP+VDHK A L Y + K+ Sbjct: 415 REWVPELKDMPNKYIHKPWEAPEHILQKANIQLGHTYPLPVVDHKAARERALCAYKSMKE 474 >gi|49478047|ref|YP_037258.1| deoxyribodipyrimidine photolyase [Bacillus thuringiensis serovar konkukian str. 97-27] gi|49329603|gb|AAT60249.1| deoxyribodipyrimidine photolyase [Bacillus thuringiensis serovar konkukian str. 97-27] Length = 476 Score = 426 bits (1096), Expect = e-117, Method: Composition-based stats. Identities = 159/480 (33%), Positives = 254/480 (52%), Gaps = 22/480 (4%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 +V + D R+ DN AL+ A + + V+ V++ + + +++ +++ V+K Sbjct: 6 IVMFQKDFRLYDNPALFEAAQSGE--VVPVYVHD----ETFSMGSASKWWLHHAIIDVKK 59 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130 L G + S E + S Q +T +++N Y+ + ++ ++ ++ L+H+ Sbjct: 60 QLEALGSTLIIRKGST----QEEILSLVEQLGITAVYWNICYDPDRLQFNQKMKMMLEHK 115 Query: 131 V-ICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189 ICK F+ +LL P I YKV+TPF A + ++ + + + PV+ Sbjct: 116 GMICKEFNSHLLLEPWVIKKKDNTEYKVFTPFYNAFQKQVIHKPISKVQSIKGGNSLPVS 175 Query: 190 PS--NIPRFFDYPFQA-IDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246 S + P+ + ++ ++ E+ A ++F K+ Y E RD P S L+ Sbjct: 176 LSVSELHLLPTIPWTSHMESIWEPTEEGAYKTWKEFFSSKLASYSEGRDFPNQNAHSMLA 235 Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKP-KSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305 PYLS G +S + ++ L + + + S++ +LIWREF +L+ YP K Sbjct: 236 PYLSFGQISVKLIYHYLINKSTESQCSLFEKQVNSFIRQLIWREFSYYLLYHYPFTAY-K 294 Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365 P E WN + LL+ W++G TG+P IDA MR+L G+MHNR RM ASFLVK L Sbjct: 295 PLNKSFEHFPWNNEEELLRVWQKGDTGYPFIDAGMRELWQTGFMHNRTRMAVASFLVKHL 354 Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425 L+ W+ G ++FM LLD D+A+N GWQW A +G D+ PYFRIFNP QG++FD G +I Sbjct: 355 LIPWQEGAKWFMDTLLDADIANNTMGWQWVAGSGADASPYFRIFNPITQGEKFDKNGEYI 414 Query: 426 RHWLPELNNVPTQYIHAPHS----WLDKNDLSLN--YPLPIVDHKKACHHTLNQYYAAKK 479 R W+PEL ++P +YIH P L K ++ L YPLP+VDHK A L Y + K+ Sbjct: 415 REWVPELKDMPNKYIHKPWEAPEHILQKANIQLGHTYPLPVVDHKAARERALCAYKSMKE 474 >gi|110833627|ref|YP_692486.1| DNA photolyase [Alcanivorax borkumensis SK2] gi|110646738|emb|CAL16214.1| DNA photolyase [Alcanivorax borkumensis SK2] Length = 484 Score = 426 bits (1095), Expect = e-117, Method: Composition-based stats. Identities = 184/485 (37%), Positives = 269/485 (55%), Gaps = 19/485 (3%) Query: 9 VHLVWLRNDLRITDNKALYAACHNS-------DAKVIAVFIATPEQWRQHGISARQSHFI 61 ++LVW RNDLR+ + L+AA S + +AV+ QW +H ++ + ++ Sbjct: 1 MNLVWYRNDLRVAAHSPLHAALTESSISAGETRPQALAVYCLCQGQWDRHQVAPLRRWYV 60 Query: 62 YASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDK 121 SL ++ +SL+ +GI F+ E L + Q VT L+ NR+Y +NE +RD Sbjct: 61 LESLRELGESLANRGIDLHVLDVDTFEKVPEALAEFAQSQGVTHLYCNREYPLNEKQRDT 120 Query: 122 LLEKRL-QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVP 180 L+ +RL + +I + FDD VL+PP ++ Y V+ ++K PVP Sbjct: 121 LVAERLREQGIILRGFDDGVLVPPAALRTGKGTPYTVFGAYKKRWDVWTADHHPAMTPVP 180 Query: 181 AI-----RLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRD 235 + G + D P +A+ + GE+ A L +F + + Y RD Sbjct: 181 SQCRAEGTFMGAKVVAKALEMLDVP-EALTQQWAPGEEAAWQQLDQFMERSLADYRRNRD 239 Query: 236 IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLM 295 P + GTS LS LS G LS C+ + D + GA W++EL WR+FYR +M Sbjct: 240 FPDLSGTSGLSVALSAGTLSVASCFRAATQAMADAGSRD--GAACWIDELAWRDFYRQIM 297 Query: 296 AFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRM 355 A +P V G+ F P T+ +EW D L AW +G TG+P++DAAMRQL GWMHNRLRM Sbjct: 298 AQFPRVSRGQGFRPETDLLEWKNDDELFAAWCEGRTGYPLVDAAMRQLVATGWMHNRLRM 357 Query: 356 ITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQG 415 +TA FL K L +DWR GE +FM+ L+DGD A+NNGGWQW+AS+G D+VPYFR+FNP QG Sbjct: 358 VTAMFLSKHLWLDWRRGEAFFMTHLIDGDFAANNGGWQWSASSGTDAVPYFRVFNPVRQG 417 Query: 416 KRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYY 475 +RFD +G FI HW+P+L ++ ++ IH P + L+ +YP P+V H + Sbjct: 418 QRFDSEGRFIAHWVPQLRDLDSKQIHEPWK---QPLLARDYPPPVVPHAGVRERVTVAFK 474 Query: 476 AAKKQ 480 AAK + Sbjct: 475 AAKSR 479 >gi|229097643|ref|ZP_04228601.1| Deoxyribodipyrimidine photolyase [Bacillus cereus Rock3-29] gi|229116646|ref|ZP_04246032.1| Deoxyribodipyrimidine photolyase [Bacillus cereus Rock1-3] gi|228666818|gb|EEL22274.1| Deoxyribodipyrimidine photolyase [Bacillus cereus Rock1-3] gi|228685782|gb|EEL39702.1| Deoxyribodipyrimidine photolyase [Bacillus cereus Rock3-29] Length = 476 Score = 426 bits (1095), Expect = e-117, Method: Composition-based stats. Identities = 159/480 (33%), Positives = 253/480 (52%), Gaps = 22/480 (4%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 +V + D R+ DN AL+ A + + V+ V++ + + +++ +++ V+K Sbjct: 6 IVMFQKDFRLYDNPALFEAAQSGE--VVPVYVHD----ETFSMGSASKWWLHHAVIDVKK 59 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ-H 129 L G + E + S Q R+T +++N Y+ + ++ ++ ++ L+ Sbjct: 60 QLEALGSTLIIRKGRTE----EEIRSLIEQLRITAVYWNICYDPDRLQSNQKMKMMLEGK 115 Query: 130 RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAI--RLTGP 187 +ICK F+ +LL P I YKV+TPF A + ++ + + L Sbjct: 116 GIICKEFNSHLLLEPWIIKKKDNTEYKVFTPFYNAFQKQIIPKPISKVQSIKWGNSLPAS 175 Query: 188 VTPSNIPRFFDYPFQA-IDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246 ++ S + P+ + ++ ++ E+ A +KF K+ +Y E RD P S L+ Sbjct: 176 LSVSELHLLPTIPWTSHMEAIWDPTEEGAYKTFKKFFSSKLVFYSEGRDFPDQNVHSMLA 235 Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKP-KSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305 PYLS G +S R ++ L + + + S++ +LIWREF +L+ YP + K Sbjct: 236 PYLSFGQISVRLMYHYLINKSTERQCSLFEKQVNSFIRQLIWREFSYYLLYHYP-FTVYK 294 Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365 P E WN + LL W++G TG+P IDA MR+L G+MHNR RM ASFLVK L Sbjct: 295 PLNKSFEHFPWNNEEELLTVWQKGETGYPFIDAGMRELWQTGFMHNRARMAVASFLVKHL 354 Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425 L+ W+ G ++FM LLD D+A+N GWQW A +G D+ PYFRIFNP QG++FD G +I Sbjct: 355 LIPWQEGAKWFMDTLLDADIANNTMGWQWVAGSGADASPYFRIFNPITQGEKFDKNGEYI 414 Query: 426 RHWLPELNNVPTQYIHAPHS----WLDKNDLSLN--YPLPIVDHKKACHHTLNQYYAAKK 479 R W+PEL ++P +YIH P L K ++ L YPLP+VDHK A L Y + K+ Sbjct: 415 RRWVPELRDIPNKYIHKPWEAPEHILQKANIQLGHTYPLPVVDHKAARERALCAYKSMKE 474 >gi|218904303|ref|YP_002452137.1| deoxyribodipyrimidine photolyase family protein [Bacillus cereus AH820] gi|218535120|gb|ACK87518.1| deoxyribodipyrimidine photolyase family protein [Bacillus cereus AH820] Length = 476 Score = 426 bits (1095), Expect = e-117, Method: Composition-based stats. Identities = 159/480 (33%), Positives = 254/480 (52%), Gaps = 22/480 (4%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 +V + D R+ DN AL+ A + + V+ V++ + + +++ +++ V+K Sbjct: 6 IVMFQKDFRLYDNPALFEATQSGE--VVPVYVHD----ETFSMGSASKWWLHHAIIDVKK 59 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130 L G + S E + S Q +T +++N Y+ + ++ ++ ++ L+H+ Sbjct: 60 QLEALGSTLIIRKGST----QEEILSLVEQLGITAVYWNICYDPDRLQSNQKMKMMLEHK 115 Query: 131 V-ICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189 ICK F+ +LL P I YKV+TPF A + ++ + + + PV+ Sbjct: 116 GMICKEFNSHLLLEPWVIKKKDNTEYKVFTPFYNAFQKQVIHKPISKVQSIKGGNSLPVS 175 Query: 190 PS--NIPRFFDYPFQA-IDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246 S + P+ + ++ ++ E+ A ++F K+ Y E RD P S L+ Sbjct: 176 LSVSELHLLPTIPWTSHMESIWEPTEEGAYKTWKEFFSSKLASYSEGRDFPNQNAHSMLA 235 Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKP-KSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305 PYLS G +S + ++ L + + + S++ +LIWREF +L+ YP K Sbjct: 236 PYLSFGQISVKLIYHYLINKSTESQCSLFEKQVNSFIRQLIWREFSYYLLYHYPFTAY-K 294 Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365 P E WN + LL+ W++G TG+P IDA MR+L G+MHNR RM ASFLVK L Sbjct: 295 PLNKSFEHFPWNNEEELLRVWQKGDTGYPFIDAGMRELWQTGFMHNRTRMAVASFLVKHL 354 Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425 L+ W+ G ++FM LLD D+A+N GWQW A +G D+ PYFRIFNP QG++FD G +I Sbjct: 355 LIPWQEGAKWFMDTLLDADIANNTMGWQWVAGSGADASPYFRIFNPITQGEKFDKNGEYI 414 Query: 426 RHWLPELNNVPTQYIHAPHS----WLDKNDLSLN--YPLPIVDHKKACHHTLNQYYAAKK 479 R W+PEL ++P +YIH P L K ++ L YPLP+VDHK A L Y + K+ Sbjct: 415 REWVPELKDMPNKYIHKPWEAPEHILQKANIQLGHTYPLPVVDHKAARERALCAYKSMKE 474 >gi|319795849|ref|YP_004157489.1| deoxyribodipyrimidine photo-lyase [Variovorax paradoxus EPS] gi|315598312|gb|ADU39378.1| Deoxyribodipyrimidine photo-lyase [Variovorax paradoxus EPS] Length = 499 Score = 426 bits (1095), Expect = e-117, Method: Composition-based stats. Identities = 175/493 (35%), Positives = 259/493 (52%), Gaps = 30/493 (6%) Query: 10 HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69 L+W R DLR+ DN ALY A +V+ VF+ + R+ FI SLL++Q Sbjct: 15 GLMWFRRDLRVDDNAALYRALRAC-RQVVCVFVFDKAILDPLPSADRRVEFIRESLLELQ 73 Query: 70 KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH 129 L +++ + + V +F NR E + + RD + L + Sbjct: 74 AELGALSGGLIVRHS----HAVQEIPALASDLGVQAVFANRDDEPDALERDAKVLGALAN 129 Query: 130 RVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPV----PAIRL 184 I ++ DS + +L Q Y V+TP+++A + + L+ PV A+ Sbjct: 130 AGIAFHTYKDSTVFDRDEVLTKTGQPYTVFTPYKRAWLAKVDSFFLKPYPVRGHADALVP 189 Query: 185 TGPVTPSNIPRFFDYPFQAIDPM---FPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQG 241 +P + F+ + P G A + F E++ Y E R+ PA++G Sbjct: 190 PPQAYREPMPSLGELGFEKTNLSALEIPTGSLGAGVLFEDFF-ERIDRYDEARNFPAVRG 248 Query: 242 TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSV 301 S + +L G +S RQ + + L ++ +GA +WL+ELIWR+FY ++ +P V Sbjct: 249 PSYMGVHLRFGTVSIRQVASVAHQ----LSLQGNAGAATWLSELIWRDFYFQILTHFPHV 304 Query: 302 CMG---KPFIPWTEKIEWNK---DSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRM 355 K F P +KI+W+ LL AW +G TG+P++DAAM Q+N G+MHNRLRM Sbjct: 305 HKDGESKSFRPEYDKIQWHHGKHADQLLDAWCEGRTGYPLVDAAMLQINQSGYMHNRLRM 364 Query: 356 ITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQG 415 + ASFL KDL +DWR GE YF L D +LASNNGGWQWA+S+G D+ PYFRIFNP Q Sbjct: 365 VVASFLCKDLGLDWRRGERYFALHLNDFELASNNGGWQWASSSGCDAQPYFRIFNPVTQS 424 Query: 416 KRFDPQGTFIRHWLPELNNVPTQYIHAPHSW----LDKNDLSLN--YPLPIVDHKKACHH 469 +RFDP+G FIR +LP+L + IHAP + L+ + L YPLP+VDH +A Sbjct: 425 ERFDPEGKFIRRYLPQLARLSNAAIHAPWTASPVELEAAGIKLGETYPLPVVDHAEAREK 484 Query: 470 TLNQYYAAKKQSL 482 TL +Y A+ ++L Sbjct: 485 TLQRYGVARAKAL 497 >gi|310798711|gb|EFQ33604.1| DNA photolyase [Glomerella graminicola M1.001] Length = 591 Score = 426 bits (1095), Expect = e-117, Method: Composition-based stats. Identities = 174/494 (35%), Positives = 258/494 (52%), Gaps = 20/494 (4%) Query: 2 KATTAMSVHLVWLRNDLRITDNKALYAA---CHNSDAKVIAVFIATPEQWRQHGISARQS 58 KA + W + DLR DN++L A + +IA+FI +P+ + H + + Sbjct: 90 KAVKPKDAVVHWFKMDLRTADNRSLSLASEKAKEAGVPLIAMFIVSPQDYEAHLTAPIRV 149 Query: 59 HFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVR 118 F+ +L ++ L++ I + + Q + LF N +YE++E+R Sbjct: 150 DFMLRTLHTLRGDLAKLDIPLYVETVEKRKRIPDRIAELMDQWGASHLFANMEYEVDELR 209 Query: 119 RDKLLEKRLQHRVICKSF-DDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQ------ 171 R+ + + R + D+ ++PPG + + + + Y VYTP+ +A ++++ Sbjct: 210 REAKMVRMFADRGLSYEVLHDTCVVPPGQLTSGSGKQYAVYTPWFRAWVRHVHDNLDLLE 269 Query: 172 --ADLRSLPVPAIRLTGPVTPSNIP------RFFDYPFQAIDPMFPIGEQNALHILRKFC 223 P + ++IP + D + +FP GE A L KFC Sbjct: 270 LCHPPAKNPPSTRDKFNSLFDTDIPSEIADRKLDDEQKKRFRAIFPAGEHEARSRLEKFC 329 Query: 224 KEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFV-DLLIKPKSGAFSWL 282 +EKV Y +R+IP GTS LS +L+ G +S R C ++ L G W+ Sbjct: 330 EEKVGQYHNKRNIPHDSGTSNLSVHLASGTISSRTCVRYARDRNKTKKLDAGIEGIRVWI 389 Query: 283 NELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQ 342 +E+ WR+FY+H++ +P VCM KP+ P IEW+ D +AW G TGFPI+DAAMRQ Sbjct: 390 SEVAWRDFYKHVLVHWPYVCMNKPYKPEYANIEWSYDMDNFKAWCAGQTGFPIVDAAMRQ 449 Query: 343 LNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDS 402 ++ +GWMHNR RMI A FL KDLL+DWR+GE YFM L+DGD ASNNGGW ++AS G D Sbjct: 450 MHAMGWMHNRCRMIVACFLAKDLLIDWRMGERYFMENLIDGDFASNNGGWGFSASVGVDP 509 Query: 403 VPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSL-NYPLPIV 461 PYFRIFNP +Q ++FDP G +IR W+PEL + + IH P+ YP IV Sbjct: 510 QPYFRIFNPLLQSEKFDPDGEYIRKWVPELKGITGKAIHDPYGRGAGAQAKKTGYPQQIV 569 Query: 462 DHKKACHHTLNQYY 475 DHK L Y Sbjct: 570 DHKGCRERALAAYK 583 >gi|196032015|ref|ZP_03099429.1| deoxyribodipyrimidine photolyase family protein [Bacillus cereus W] gi|228928215|ref|ZP_04091256.1| Deoxyribodipyrimidine photolyase [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228946776|ref|ZP_04109081.1| Deoxyribodipyrimidine photolyase [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|229122697|ref|ZP_04251907.1| Deoxyribodipyrimidine photolyase [Bacillus cereus 95/8201] gi|195994766|gb|EDX58720.1| deoxyribodipyrimidine photolyase family protein [Bacillus cereus W] gi|228660748|gb|EEL16378.1| Deoxyribodipyrimidine photolyase [Bacillus cereus 95/8201] gi|228812900|gb|EEM59216.1| Deoxyribodipyrimidine photolyase [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228831262|gb|EEM76858.1| Deoxyribodipyrimidine photolyase [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] Length = 476 Score = 426 bits (1095), Expect = e-117, Method: Composition-based stats. Identities = 158/480 (32%), Positives = 253/480 (52%), Gaps = 22/480 (4%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 +V + D R+ DN AL+ A + + V+ V++ + + +++ +++ V+K Sbjct: 6 IVMFQKDFRLYDNPALFEAAQSGE--VVPVYVHD----ETFSMGSASKWWLHHAIIDVKK 59 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130 L G + S E + S Q +T +++N Y+ + ++ ++ ++ L+ + Sbjct: 60 QLEALGSTLIIRKGST----QEKILSLVEQLGITAVYWNICYDPDRLQSNQKMKMMLEDK 115 Query: 131 V-ICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189 ICK F+ +LL P I YKV+TPF A + ++ + + + PV+ Sbjct: 116 GMICKEFNSHLLLEPWIIKKKDNTEYKVFTPFYNAFQKQVIHKPISKVQSIKGGNSLPVS 175 Query: 190 PS--NIPRFFDYPFQA-IDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246 S + P+ + ++ ++ E+ A ++F K+ Y E RD P S L+ Sbjct: 176 LSVSELHLLPTIPWTSHMESIWEPTEEGAYKTWKEFFSSKLASYSEGRDFPNQNAHSMLA 235 Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKP-KSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305 PYLS G +S + ++ L + + + S++ +LIWREF +L+ YP K Sbjct: 236 PYLSFGQISVKLIYHYLINKSTESQCSLFEKQVNSFIRQLIWREFSYYLLYHYPFTAY-K 294 Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365 P E WN + LL+ W++G TG+P IDA MR+L G+MHNR RM ASFLVK L Sbjct: 295 PLNKSFEHFPWNNEEELLRVWQKGDTGYPFIDAGMRELWQTGFMHNRTRMAVASFLVKHL 354 Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425 L+ W+ G ++FM LLD D+A+N GWQW A +G D+ PYFRIFNP QG++FD G +I Sbjct: 355 LIPWQEGAKWFMDTLLDADIANNTMGWQWVAGSGADASPYFRIFNPITQGEKFDKNGEYI 414 Query: 426 RHWLPELNNVPTQYIHAPHS----WLDKNDLSLN--YPLPIVDHKKACHHTLNQYYAAKK 479 R W+PEL ++P +YIH P L K ++ L YPLP+VDHK A L Y + K+ Sbjct: 415 REWVPELKDMPNKYIHKPWEAPEHILQKANIQLGHTYPLPVVDHKAARERALCAYKSMKE 474 >gi|228953466|ref|ZP_04115511.1| Deoxyribodipyrimidine photolyase [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228806205|gb|EEM52779.1| Deoxyribodipyrimidine photolyase [Bacillus thuringiensis serovar kurstaki str. T03a001] Length = 476 Score = 425 bits (1094), Expect = e-117, Method: Composition-based stats. Identities = 160/480 (33%), Positives = 254/480 (52%), Gaps = 22/480 (4%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 +V + D R+ DN AL+ A + + V+ V++ I + +++ +++ VQK Sbjct: 6 IVMFQKDFRLYDNPALFEAVQSGE--VLPVYVQD----ETFSIGSAAKWWLHHAIIDVQK 59 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH- 129 L G + + E + S Q +T +++N Y+ + ++ ++ ++ L+ Sbjct: 60 QLKALGSTLIIRKGNT----QEEILSLIKQLDITAVYWNSCYDPDRLKSNQKMKMILEDK 115 Query: 130 RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAI--RLTGP 187 +ICK F+ +LL P I YKV+TPF A + ++ + + L Sbjct: 116 GIICKEFNSHLLLEPWIIKKKDNTEYKVFTPFYNAFQKQVIPKPINRVQSIKWGNSLPAS 175 Query: 188 VTPSNIPRFFDYPFQA-IDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246 ++ S + P+ + ++ ++ E+ A +KF K+ Y E RD P S L+ Sbjct: 176 LSVSELHLLPTIPWTSHMEAIWEPTEEGAYKTFKKFFSSKLASYSEGRDFPNQNVHSMLA 235 Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKP-KSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305 PYLS G +S + ++ L + + + S++ +LIWREF +L+ YP + K Sbjct: 236 PYLSFGQISVKLMFHYLINKSTERQSSLFEKQVNSFIRQLIWREFSYYLLYHYP-FTVYK 294 Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365 P E WNK+ LL+ W++G TG+P IDA MR+L G+MHNR RM ASFLVK L Sbjct: 295 PLNKSFEHFPWNKEEELLRVWQKGETGYPFIDAGMRELWQTGFMHNRARMAVASFLVKHL 354 Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425 L+ W+ G ++FM LLD D+A+N GWQW A +G D+ PYFRIFNP QG++FD G +I Sbjct: 355 LIPWQEGAKWFMDTLLDADIANNTMGWQWVAGSGADASPYFRIFNPITQGEKFDKNGEYI 414 Query: 426 RHWLPELNNVPTQYIHAPHS----WLDKNDLSLN--YPLPIVDHKKACHHTLNQYYAAKK 479 R W+PEL ++P +YIH P L K+++ L YP PIVDHK A L Y + K+ Sbjct: 415 RRWVPELRDIPNKYIHKPWEAPEHILQKSNIKLGNTYPYPIVDHKAARERALCAYKSMKE 474 >gi|320585730|gb|EFW98409.1| deoxyribodipyrimidine photo-lyase [Grosmannia clavigera kw1407] Length = 584 Score = 425 bits (1094), Expect = e-117, Method: Composition-based stats. Identities = 174/492 (35%), Positives = 256/492 (52%), Gaps = 25/492 (5%) Query: 11 LVWLRNDLRITDNKALYAACHNSD---AKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67 + W ++DLR DN+AL A + +I +++ +P+ W H + + F+ +L Sbjct: 89 VHWFKSDLRTLDNRALAMASEKAQMAGVPLIGLYVVSPQDWEAHLTAPVRVDFVLRTLAV 148 Query: 68 VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKL-LEKR 126 +Q+ L++ GI + S + LF N +YE++E+RR+ + + Sbjct: 149 LQRDLAELGIPLWMETVEQRKQIPHRILSLMDKWGANHLFANMEYEVDELRRETAMVRQC 208 Query: 127 LQHRVICKSFDDSVLLPPGSILNHA-LQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185 D ++PPG++ + + + Y VYTP+ +A Q++ + P+ + Sbjct: 209 AAQGKSMAVVHDICVVPPGNLTSKSSGKAYAVYTPWFRAWKQHVYTNEHILGPIDNPKTQ 268 Query: 186 GPVTPSNIPRFFDYPFQAID---------------PMFPIGEQNALHILRKFCKEKVYYY 230 D P + ++P GE A+ L FC E+V Y Sbjct: 269 AKTKTRWPAELMDCPIPSAPKGKTLGTKAEAKRFCTLWPAGEHEAMRRLEHFCDERVADY 328 Query: 231 VEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEE-FVDLLIKPKSGAFSWLNELIWRE 289 ++RD PA++ TS LSPYL+ GVLS R ++ L G W++E+ WR+ Sbjct: 329 SDERDFPAVEATSSLSPYLAAGVLSARTVIRTARDRTGAKTLDDGTEGFRVWISEVSWRD 388 Query: 290 FYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWM 349 FYRH++ +P VC KPF I W+ + AW +G TG+PI+DAAMRQLN GW+ Sbjct: 389 FYRHILVAWPHVCFNKPFKLAYSGIAWSYNHDHFTAWTEGRTGYPIVDAAMRQLNKQGWL 448 Query: 350 HNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIF 409 HNR RMI ASFL KDLL+DWR+GE YFM L+DGD ASN+GGW ++AS G D PYFRIF Sbjct: 449 HNRCRMIVASFLAKDLLLDWRLGERYFMEHLVDGDFASNSGGWGFSASVGVDPQPYFRIF 508 Query: 410 NPTIQGKRFDPQGTFIRHWLPELNN---VPTQYIHAPHSW-LDKNDLSLNYPLPIVDHKK 465 NP +Q +RFDP GT+IR W+PEL + + IH P+ + YP PIV HK+ Sbjct: 509 NPILQSERFDPDGTYIRRWVPELQDSGIADNKAIHEPYGRGFGDQARAAGYPEPIVQHKQ 568 Query: 466 ACHHTLNQYYAA 477 A L Y A Sbjct: 569 AREAALEAYKKA 580 >gi|218231250|ref|YP_002367872.1| deoxyribodipyrimidine photolyase family protein [Bacillus cereus B4264] gi|218159207|gb|ACK59199.1| deoxyribodipyrimidine photo-lyase [Bacillus cereus B4264] Length = 476 Score = 425 bits (1094), Expect = e-117, Method: Composition-based stats. Identities = 160/480 (33%), Positives = 252/480 (52%), Gaps = 22/480 (4%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 +V + D R+ DN AL+ A + + V+ V++ I + +++ +++ VQK Sbjct: 6 IVMFQKDFRLYDNPALFEAVQSGE--VLPVYVQD----ETFSIGSAAKWWLHHAIIDVQK 59 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH- 129 L G + + E + S Q +T +++N Y+ + ++ ++ ++ L+ Sbjct: 60 QLKALGSTLIIRKGNT----QEEILSLIKQLDITAVYWNSCYDPDRLKSNQKMKMILEDK 115 Query: 130 RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAI--RLTGP 187 +ICK F+ +LL P I YKV+TPF A + ++ + + L Sbjct: 116 GIICKEFNSHLLLEPWIIKKKDNTEYKVFTPFYNAFQKQVIPKPISRVQSIKWGSSLPAS 175 Query: 188 VTPSNIPRFFDYPFQA-IDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246 ++ S + P+ + ++ ++ E+ A +KF K+ Y E RD P S L+ Sbjct: 176 LSVSELHLLPTIPWTSHMEAIWEPTEEGAYKTFKKFFSSKLASYSEGRDFPNQNAHSMLA 235 Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKP-KSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305 PYLS G +S + ++ L + + + S++ +LIWREF +L+ YP K Sbjct: 236 PYLSFGQISVKLMYHYLINKSTERQCSFFEKQVISFIRQLIWREFSYYLLYHYPFTAY-K 294 Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365 P E WNK+ LL+ W++G TG+P IDA MR+L G+MHNR RM ASFLVK L Sbjct: 295 PLNKNFEHFPWNKEEELLRVWQKGETGYPFIDAGMRELWQTGFMHNRARMAVASFLVKHL 354 Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425 L+ W+ G ++FM LLD D+A+N GWQW A +G D+ PYFRIFNP QG++FD G +I Sbjct: 355 LIPWQEGAKWFMDTLLDADIANNTMGWQWVAGSGADASPYFRIFNPITQGEKFDKNGEYI 414 Query: 426 RHWLPELNNVPTQYIHAPHS----WLDKNDLSLN--YPLPIVDHKKACHHTLNQYYAAKK 479 R W+PEL ++P +YIH P L K+++ L YP PIVDHK A L Y K+ Sbjct: 415 RRWIPELRDIPNKYIHKPWEAPEHILQKSNIKLGNTYPYPIVDHKAARERALCAYKNMKE 474 >gi|159027902|emb|CAO89709.1| unnamed protein product [Microcystis aeruginosa PCC 7806] Length = 474 Score = 425 bits (1093), Expect = e-117, Method: Composition-based stats. Identities = 170/474 (35%), Positives = 238/474 (50%), Gaps = 14/474 (2%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 L W R DLR++DN L A S K+I VF P I+ + ++ L +++K Sbjct: 6 LFWHRRDLRLSDNIGLSKARERS-PKIIGVFCLDPAILEGDDIAPARVAYLLGCLEELEK 64 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130 + QKG + + L + +F+N E +RD+ + LQ + Sbjct: 65 NYRQKGSQLLIIRGKPS----QTLVNLAGNLSAKAVFFNLDIEPYARQRDQQVIAALQTK 120 Query: 131 VI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT---G 186 I ++F D +L PG +L + Y VYTPF K Q + + Sbjct: 121 GIEVETFWDQLLQAPGQVLTLSKSPYTVYTPFWKNWSQLAKARPTTLENLQGLDKNEGEK 180 Query: 187 PVTPSNIPRFFDYPFQAIDPM-FPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245 N+P + F +P+ GE+ A L +FC+ + Y E R+ PA+ GTS+L Sbjct: 181 LTETINLPTLENLGFTWQNPLPLTPGEKAANSTLEEFCQGVINNYQEDRNFPAVDGTSRL 240 Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIK-PKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304 S L G + R W E + + K +W EL WREFY+H + F+P + +G Sbjct: 241 SAALKFGTIGIRTIWTATLELLENCRAQEAKDSIITWQQELAWREFYQHCLYFFPELAVG 300 Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364 + W + QAW QG TG+PI+DAAMRQLN GWMHNR RMI ASFL KD Sbjct: 301 -AYRKEFRHFPWQDNEEHFQAWCQGKTGYPIVDAAMRQLNETGWMHNRCRMIVASFLTKD 359 Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424 L+++W+ GE+YFM +L DGDLA+NNGGWQW+AS+G D P RIFNP Q ++FDP+G + Sbjct: 360 LIINWQKGEKYFMQKLFDGDLAANNGGWQWSASSGMDPKP-LRIFNPASQTQKFDPEGEY 418 Query: 425 IRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478 IR WLPEL +V T+Y+ YP PIVDH + Y K Sbjct: 419 IRQWLPELASVDTEYLVT-GKIPRLERHRCGYPEPIVDHNQQQKEFKRLYSNQK 471 >gi|206969086|ref|ZP_03230041.1| deoxyribodipyrimidine photolyase family protein [Bacillus cereus AH1134] gi|206736127|gb|EDZ53285.1| deoxyribodipyrimidine photolyase family protein [Bacillus cereus AH1134] Length = 476 Score = 425 bits (1093), Expect = e-117, Method: Composition-based stats. Identities = 159/480 (33%), Positives = 252/480 (52%), Gaps = 22/480 (4%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 +V + D R+ DN AL+ A + + V+ V++ I + ++ +++ VQK Sbjct: 6 IVMFQKDFRLYDNPALFEAVQSGE--VLPVYVQD----ETFSIGSAAKWWLRHAIMDVQK 59 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH- 129 L G + + E + S Q +T +++N Y+ + ++ ++ ++ L+ Sbjct: 60 QLKALGSTLIIRKGNTQ----EEILSLIKQLDITAVYWNSCYDPDRLKSNQKMKMILEDK 115 Query: 130 RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAI--RLTGP 187 +ICK F+ +LL P I YKV+TPF A + ++ + + L Sbjct: 116 GIICKEFNSHLLLEPWIIKKKDNTEYKVFTPFYNAFQKQVIPKPISRVQSIKWGNSLPAS 175 Query: 188 VTPSNIPRFFDYPFQA-IDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246 ++ S + P+ + ++ ++ E+ A +KF K+ Y E RD P S L+ Sbjct: 176 LSVSELHLLPTIPWTSHMEAIWDPTEEGAYKTFKKFFSSKLASYSEGRDFPDQNVHSMLA 235 Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKP-KSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305 PYLS G +S + ++ L + + + S++ +LIWREF +L+ YP + K Sbjct: 236 PYLSFGQISVKLMFHYLINKSTERQCSLFEKQVNSFIRQLIWREFSYYLLYHYP-FTVSK 294 Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365 P E W+K+ LL W++G TG+P IDA MR+L G+MHNR RM ASFLVK L Sbjct: 295 PLNKSFENFPWDKEEELLSVWQKGETGYPFIDAGMRELWQTGFMHNRARMAVASFLVKHL 354 Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425 L+ W+ G ++FM LLD D+A+N GWQW A +G D+ PYFRIFNP QG++FD G +I Sbjct: 355 LIPWQEGAKWFMDTLLDADIANNTMGWQWVAGSGADASPYFRIFNPITQGEKFDKNGEYI 414 Query: 426 RHWLPELNNVPTQYIHAPHS----WLDKNDLSLN--YPLPIVDHKKACHHTLNQYYAAKK 479 R W+PEL+++P +YIH P L K ++ L YP PIVDHK A L Y + K+ Sbjct: 415 RRWVPELSDIPNKYIHKPWEAPAHILQKANIKLGDTYPYPIVDHKAARERALCAYKSMKE 474 >gi|307726566|ref|YP_003909779.1| Deoxyribodipyrimidine photo-lyase [Burkholderia sp. CCGE1003] gi|307587091|gb|ADN60488.1| Deoxyribodipyrimidine photo-lyase [Burkholderia sp. CCGE1003] Length = 499 Score = 425 bits (1093), Expect = e-117, Method: Composition-based stats. Identities = 178/500 (35%), Positives = 256/500 (51%), Gaps = 37/500 (7%) Query: 3 ATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQ-------WRQHGIS- 54 +T LVW R DLR TDN ALY A + + +V VF+ W+ Sbjct: 7 STDTFDTGLVWFRRDLRHTDNAALYYALKHCE-RVWCVFVFDTTILQPLIDKWQSRHPGT 65 Query: 55 ---ARQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQ 111 R+ FI ASL ++ ++L +G + D ++ + + V +F N Sbjct: 66 QAQDRRVEFILASLHELDEALRARGGGLVVL----YGDPVDLVPKLAAELEVDAVFANHD 121 Query: 112 YEINEVRRDKLLEKRLQHRV-ICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLV 170 YE + RD+ + +RL ++F D V+ +L + + V+TP++ A ++ L Sbjct: 122 YEPAAIERDEAVRERLSDAGRALQTFKDQVIFERAELLTGQNKPFTVFTPYKNAWLKQLT 181 Query: 171 QADLRSLPVPA-IRLTGPVTPSNIPRFFDYPFQAIDPM------FPIGEQNALHILRKFC 223 DL+ PV P+ P + P P G A +L F Sbjct: 182 SFDLKPFPVETYANRLAPLPPRLNRQLPTLEQLGFAPGNLGELELPTGMSGAQRLLDDFL 241 Query: 224 KEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLN 283 ++ Y E+RD PA +G S LS +L G +S R E + GA +WL+ Sbjct: 242 S-RIDSYAERRDFPAAKGPSYLSVHLRFGTVSIRTLARLAHEMSLQ---PDGRGAATWLS 297 Query: 284 ELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHL---LQAWKQGYTGFPIIDAAM 340 EL+WR+FY ++A +P + G F +++ W + AW +G TG+P+IDAAM Sbjct: 298 ELVWRDFYFMILAHHPRLAAGASFRADYDRLRWEQGPEAEAAFAAWCEGRTGYPLIDAAM 357 Query: 341 RQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGN 400 QLN G+MHNRLRM+TASFLVKDL VDWR+GE YF QL D D A+NNGGWQWAASTG Sbjct: 358 LQLNRTGYMHNRLRMVTASFLVKDLGVDWRLGERYFAEQLNDYDFAANNGGWQWAASTGC 417 Query: 401 DSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKN------DLSL 454 D+ PYFRIFNP Q ++FD +G FI+ +LP+L +P ++IHAP + L Sbjct: 418 DAQPYFRIFNPVTQSEKFDAEGRFIKRYLPQLAKLPAKWIHAPWLAGAQRLAEYGVMLGE 477 Query: 455 NYPLPIVDHKKACHHTLNQY 474 +YP PIVDH +A TL ++ Sbjct: 478 DYPAPIVDHAQARARTLARF 497 >gi|209549047|ref|YP_002280964.1| deoxyribodipyrimidine photo-lyase [Rhizobium leguminosarum bv. trifolii WSM2304] gi|209534803|gb|ACI54738.1| Deoxyribodipyrimidine photo-lyase [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 483 Score = 425 bits (1093), Expect = e-117, Method: Composition-based stats. Identities = 165/491 (33%), Positives = 255/491 (51%), Gaps = 21/491 (4%) Query: 3 ATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIY 62 A A+ ++W R DLR+ DN+AL AA H S +I V+I P + A Q+ +++ Sbjct: 2 AKDAVKPVILWFRRDLRLDDNQALNAA-HLSGRPIIPVYINEPAAAGTGPLGAAQAWWLH 60 Query: 63 ASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKL 122 SL + +SL ++ Q D++E L + + +F+NR+Y+ + + D Sbjct: 61 HSLEALDRSLHER----QGELVLASGDALEVLRAVIKKSGAEAVFWNRRYDPSGISVDTH 116 Query: 123 LEKRL-QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPA 181 +++ L + + +SF +L P ++ Y+VYTPF +AL P Sbjct: 117 IKQELEKQAIEARSFGGQLLHEPSRLMTGNGTPYRVYTPFWRALEGAGEAEPPLEAPAKL 176 Query: 182 IRLTGPVTPSNIPRFFDYPFQ-----AIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDI 236 + + + P + ++ GEQ A L F ++++ Y E RD Sbjct: 177 RLASQRPASETLKSWKLLPTKPDWAKGFADLWTPGEQGARERLSAFVEDELKGYKENRDY 236 Query: 237 PAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMA 296 PA TS LSP+L++G +SP + W+ + + P + + E+ WREF HL+ Sbjct: 237 PAKPATSMLSPHLALGEISPARIWDATRGLSNRV---PAADIVHFRKEIAWREFSYHLLF 293 Query: 297 FYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMI 356 +P + + + + +W D +AW++G TG+PI+DA MRQL GWMHNR+RMI Sbjct: 294 HFPRLA-SENWNDRFDGFKWRNDDGDFEAWRRGMTGYPIVDAGMRQLWRHGWMHNRVRMI 352 Query: 357 TASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGK 416 ASFL+KDL++DWR GE +F L+D D A+N WQW A +G D+ P+FRIFNP +QG+ Sbjct: 353 VASFLIKDLMIDWRDGEAWFRDTLVDADPANNAASWQWVAGSGADASPFFRIFNPMLQGE 412 Query: 417 RFDPQGTFIRHWLPELNNVPTQYIH----APHSWLDKNDL--SLNYPLPIVDHKKACHHT 470 FDP G ++R +PEL + +YIH AP S LD+ + YP PIVDH A Sbjct: 413 TFDPDGDYVRAHVPELQRLGAKYIHRPFEAPKSALDEAGIILGQTYPKPIVDHASARDRA 472 Query: 471 LNQYYAAKKQS 481 L Y A K + Sbjct: 473 LAAYKATKDAA 483 >gi|228908916|ref|ZP_04072746.1| Deoxyribodipyrimidine photolyase [Bacillus thuringiensis IBL 200] gi|228850638|gb|EEM95462.1| Deoxyribodipyrimidine photolyase [Bacillus thuringiensis IBL 200] Length = 476 Score = 425 bits (1093), Expect = e-117, Method: Composition-based stats. Identities = 158/480 (32%), Positives = 251/480 (52%), Gaps = 22/480 (4%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 +V + D R+ DN AL+ A + + V+ V++ + +++ +++ V+K Sbjct: 6 IVMFQKDFRLYDNPALFEAVQSGE--VLPVYVQD----EAFSMGEASKWWLHHAVIDVKK 59 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH- 129 L G + E + S + +T +++N Y+ + ++ ++ ++ L+ Sbjct: 60 QLEALGSTLIIRKGRTE----EAILSLIEKLDITAVYWNICYDPDRLKSNQKMKMMLEDK 115 Query: 130 RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAI--RLTGP 187 +ICK F+ +LL I YKV+TPF A + ++ + + L Sbjct: 116 GIICKEFNSHLLLESWIIKKKDNTEYKVFTPFYNAFQKQVIPKPVSKVQSIKWGSSLPAS 175 Query: 188 VTPSNIPRFFDYPFQA-IDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246 ++ S + P+ + I+ M+ E+ A +KF K+ Y E RD P S L+ Sbjct: 176 LSVSELHLLPTIPWTSHIESMWEPTEEGAYKTFKKFFSSKLASYSEGRDFPNQNAHSMLA 235 Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKP-KSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305 PYLS G +S + ++ L + + + S++ +LIWREF +L+ YP + K Sbjct: 236 PYLSFGQISVKLMYHYLINKSTERQCSLFEKQVNSFIRQLIWREFSYYLLYHYP-FAVYK 294 Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365 P E WNK+ LL+ W++G TG+P IDA MR+L G+MHNR RM ASFLVK L Sbjct: 295 PLNKNFEHFPWNKEEELLRVWQKGETGYPFIDAGMRELWQTGFMHNRTRMAVASFLVKHL 354 Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425 L+ W+ G ++FM LLD D+A+N GWQW A +G D+ PYFRIFNP QG++FD G +I Sbjct: 355 LIPWQEGAKWFMDTLLDADIANNIMGWQWVAGSGADASPYFRIFNPITQGEKFDKNGEYI 414 Query: 426 RHWLPELNNVPTQYIHAPHS----WLDKNDLSLN--YPLPIVDHKKACHHTLNQYYAAKK 479 R W+PEL ++P +YIH P L K ++ L YPLP+VDHK A L Y + K+ Sbjct: 415 RKWVPELRDIPNKYIHKPWEAPEHILQKANIKLGNAYPLPVVDHKAARERALCAYKSMKE 474 >gi|229145749|ref|ZP_04274130.1| Deoxyribodipyrimidine photolyase [Bacillus cereus BDRD-ST24] gi|296503680|ref|YP_003665380.1| deoxyribodipyrimidine photolyase [Bacillus thuringiensis BMB171] gi|228637730|gb|EEK94179.1| Deoxyribodipyrimidine photolyase [Bacillus cereus BDRD-ST24] gi|296324732|gb|ADH07660.1| deoxyribodipyrimidine photolyase [Bacillus thuringiensis BMB171] Length = 476 Score = 425 bits (1093), Expect = e-117, Method: Composition-based stats. Identities = 158/480 (32%), Positives = 248/480 (51%), Gaps = 22/480 (4%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 +V + D R+ DN AL+ A + + V+ V+I I + +++ +++ V+K Sbjct: 6 IVMFQKDFRLYDNPALFEAVQSGE--VLPVYIQD----ETFSIGSASKWWLHHAVIDVKK 59 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH- 129 L G + E + S Q +T +++N Y+ + ++ ++ ++ L+ Sbjct: 60 QLEALGSTLIIRKGRTE----EEILSLIEQLDITAVYWNICYDPDRLQSNQKMKMMLEDK 115 Query: 130 RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAI--RLTGP 187 +ICK F+ +LL P I YKV+TPF A + ++ + L Sbjct: 116 GIICKEFNSHLLLEPWIIKKKDNTEYKVFTPFYNAFQKQVIPKPFSRVQSIKWGNSLPAS 175 Query: 188 VTPSNIPRFFDYPFQA-IDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246 ++ S + P+ + ++ ++ E+ A +KF K+ Y E RD P S L+ Sbjct: 176 LSVSELQLLPIIPWTSHMEVIWDPTEEGAYKTFKKFFSSKLVSYSEGRDFPGQNVHSMLA 235 Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKP-KSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305 PYLS G +S + ++ L + + + S++ +LIWREF +L+ YP + K Sbjct: 236 PYLSFGQISVKLMFHYLINKSTERQCSLFEKQVNSFIRQLIWREFSYYLLYHYP-FTVYK 294 Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365 P E W+K+ LL+ W++G TG+P IDA MR+L G+MHNR RM ASFLVK L Sbjct: 295 PLNKSFENFPWDKEEELLRVWQKGKTGYPFIDAGMRELWQTGFMHNRARMAVASFLVKHL 354 Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425 L+ W+ G ++FM LLD D+A+N GWQW A +G D+ PYFRIFNP QG++FD G +I Sbjct: 355 LIPWQEGAKWFMDTLLDADIANNTMGWQWVAGSGADASPYFRIFNPITQGEKFDKNGEYI 414 Query: 426 RHWLPELNNVPTQYIHAPHSWLDK------NDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479 R W+PEL ++P +YIH P + L YP PIVDHK A L Y + KK Sbjct: 415 RRWVPELRDIPNKYIHKPWEAPEHILQKSNIKLGDTYPFPIVDHKAARERALCAYKSMKK 474 >gi|217960578|ref|YP_002339142.1| deoxyribodipyrimidine photolyase family protein [Bacillus cereus AH187] gi|229139780|ref|ZP_04268347.1| Deoxyribodipyrimidine photolyase [Bacillus cereus BDRD-ST26] gi|217063006|gb|ACJ77256.1| deoxyribodipyrimidine photolyase family protein [Bacillus cereus AH187] gi|228643660|gb|EEK99924.1| Deoxyribodipyrimidine photolyase [Bacillus cereus BDRD-ST26] Length = 476 Score = 425 bits (1092), Expect = e-117, Method: Composition-based stats. Identities = 155/481 (32%), Positives = 252/481 (52%), Gaps = 22/481 (4%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 +V + D R+ DN AL+ A + + V+ +++ I + +++ +++ V++ Sbjct: 6 IVMFQKDFRLYDNPALFEAAQSGE--VLPLYVYD----ETFSIGSASKWWLHHTIIDVKR 59 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130 L G + + E + S Q +T +++N Y+ + ++ ++ ++ L+ + Sbjct: 60 QLEALGSTLIIRKGNTM----EEILSLIEQLGITAVYWNICYDPDRLQSNQKMKMMLEDK 115 Query: 131 VI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAI--RLTGP 187 I CK F+ +LL P I YKV+TPF A + ++ + + L Sbjct: 116 GITCKEFNSHLLLEPWIIKKKDNTEYKVFTPFYNAFQKQVISKPISKVQSIKWGSSLPAS 175 Query: 188 VTPSNIPRFFDYPFQA-IDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246 ++ S + P+ + ++ ++ E+ A +KF K+ Y E RD P S L+ Sbjct: 176 LSVSELHLLPTIPWTSHMESIWEPTEEGAYKTCKKFFSSKLVSYSEGRDFPNQNAHSMLA 235 Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKP-KSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305 PYLS G +S + ++ L + + + S++ + IWREF +L+ YP + K Sbjct: 236 PYLSFGQISVKLMYHYLINKSNEKQCSLFEQQVNSFIRQFIWREFSYYLLYHYP-FTVYK 294 Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365 P E WN + LL+ W++G TG+P IDA MR+L G+MHNR RM ASFLVK L Sbjct: 295 PLNKSFEYFPWNNEKKLLRVWQKGKTGYPFIDAGMRELWQTGFMHNRARMAVASFLVKHL 354 Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425 L+ W+ G ++FM LLD D+A+N GWQW A +G D+ PYFRIFNP QG++FD G +I Sbjct: 355 LIPWQEGAKWFMDTLLDADIANNTMGWQWVAGSGADASPYFRIFNPITQGEKFDKDGEYI 414 Query: 426 RHWLPELNNVPTQYIHAPHS----WLDKNDLSLN--YPLPIVDHKKACHHTLNQYYAAKK 479 R W+PEL ++P +YIH P L K ++ L YPLP+VDHK A L Y + K+ Sbjct: 415 RKWVPELRDMPNKYIHKPWEAPEHILQKANIKLGDTYPLPVVDHKAARERALCAYKSMKE 474 Query: 480 Q 480 Sbjct: 475 S 475 >gi|326476092|gb|EGE00102.1| deoxyribodipyrimidine photo-lyase [Trichophyton tonsurans CBS 112818] Length = 589 Score = 425 bits (1092), Expect = e-116, Method: Composition-based stats. Identities = 175/490 (35%), Positives = 255/490 (52%), Gaps = 19/490 (3%) Query: 11 LVWLRNDLRITDNKALYAA---CHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67 + W + DLR+ DN++L+ A + + +I ++I +PE H S + I +L Sbjct: 100 VHWFKQDLRLQDNRSLHRAYSFARDHNIPLICLYIFSPEDLTAHLCSPPRVDLILRALAT 159 Query: 68 VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127 ++ LS+ I + C +LF N +YE++E+RR+ L + Sbjct: 160 LKSELSKNDIPLYMESIERRKGVPSRIVELCKTWGANQLFANIEYEVDELRREANLVRLC 219 Query: 128 QHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQAD--LRSLPVPAIRL 184 + I + DD+ ++ PG + + Y VYTP+ ++ + L Q L + PA+ Sbjct: 220 AKQGIRFYTEDDTCVVTPGELTTQQGKQYAVYTPWYRSWVAYLKQHPENLELVDAPAVNA 279 Query: 185 TGP------------VTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVE 232 T N + + M+P GEQ A LR+F + Y Sbjct: 280 GDARNHFKDLFDSAVPTAPNQMKLSGAEQERFKKMYPEGEQEATRRLREFLSKNGKQYHA 339 Query: 233 QRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYR 292 +RD + Q TS LSPY S G LS R ++ + L G +W++E+ WR+FY+ Sbjct: 340 KRDSMSSQFTSVLSPYFSCGALSARTAVRMARDANGNELAGKSPGYSTWISEVAWRDFYK 399 Query: 293 HLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNR 352 H++ +P +CM K F P +EW D AW +G TGFPI+DAAMRQL WMHNR Sbjct: 400 HVLTNWPYICMNKCFKPEFTDLEWEYDPTKFDAWCEGKTGFPIVDAAMRQLKHCAWMHNR 459 Query: 353 LRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPT 412 RMI +SFL KDLL+DWR GE++FM L+DGD ASN+GGW + +STG D PYFRIFNP Sbjct: 460 TRMIVSSFLSKDLLIDWRRGEQFFMLHLIDGDFASNHGGWGFGSSTGVDPQPYFRIFNPL 519 Query: 413 IQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLN-YPLPIVDHKKACHHTL 471 Q +RFDP G +IRHW+PEL +V IH P+ + N YP PIV+H ++ L Sbjct: 520 RQSERFDPDGEYIRHWVPELRDVEGSAIHDPYGRGAEKIAEKNGYPRPIVNHTESRERAL 579 Query: 472 NQYYAAKKQS 481 +Y A + S Sbjct: 580 AKYKKAAQGS 589 >gi|15888554|ref|NP_354235.1| DNA photolyase [Agrobacterium tumefaciens str. C58] gi|15156266|gb|AAK87020.1| DNA photolyase [Agrobacterium tumefaciens str. C58] Length = 479 Score = 424 bits (1091), Expect = e-116, Method: Composition-based stats. Identities = 170/496 (34%), Positives = 243/496 (48%), Gaps = 32/496 (6%) Query: 1 MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHF 60 M TA +VW R DLR++DN AL AA + VI V+I + Q + Sbjct: 1 MSLKTA--PVIVWFRKDLRLSDNLALLAAVEHG-GPVIPVYIREKS---AGPLGGAQEWW 54 Query: 61 IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120 ++ SL + SL + G D+ L + + +NR+Y+ + D Sbjct: 55 LHHSLAALSSSLEKAGGRLVLASG----DAERILRDLISETGADTVVWNRRYDPTGMATD 110 Query: 121 KLLEKRLQHRV-ICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPV 179 K L+++L+ +SF +L P + + Y+VYTPF +AL + P Sbjct: 111 KALKQKLRDDGLTVRSFSGQLLHEPSRLQTKSGGPYRVYTPFWRALEGSDEPHAPADPPK 170 Query: 180 PAIRLTGPVTPSNIPRFFDYPFQAIDP--------MFPIGEQNALHILRKFCKEKVYYYV 231 LT P + ++ P ++ GE AL L F + Y Sbjct: 171 S---LTAPKVWPKSEKLSNWKLLPTKPDWAKDFSDIWTPGETGALDKLDDFIDGALKGYE 227 Query: 232 EQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFY 291 E RD PA TS LSP+L+ G +SP W+ K + + + E++WREF Sbjct: 228 EGRDFPAKPATSLLSPHLAAGEISPAAVWHATKGLSRHI---ASNDISRFRKEIVWREFC 284 Query: 292 RHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHN 351 HL+ +P + K + + W D +AW +G TG+PI+DA MRQL G MHN Sbjct: 285 YHLLFHFPELGE-KNWNDSFDAFSWRDDEKSFKAWTRGMTGYPIVDAGMRQLWQHGTMHN 343 Query: 352 RLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNP 411 R+RMI ASFL+K LL+DWR GE++F L+D D ASN WQW A +G D+ P+FRIFNP Sbjct: 344 RVRMIVASFLIKHLLIDWRKGEKWFRDTLVDADPASNAANWQWVAGSGADASPFFRIFNP 403 Query: 412 TIQGKRFDPQGTFIRHWLPELNNVPTQYIH----APHSWLDKN--DLSLNYPLPIVDHKK 465 +QG++FD G ++R ++PEL + +YIH AP L K +L YPLPIVDH K Sbjct: 404 ILQGEKFDGDGDYVRRFVPELEKLERKYIHKPFEAPKDALKKAGVELGKTYPLPIVDHGK 463 Query: 466 ACHHTLNQYYAAKKQS 481 A L Y A KK + Sbjct: 464 ARERALAAYAAVKKTT 479 >gi|229191248|ref|ZP_04318236.1| Deoxyribodipyrimidine photolyase [Bacillus cereus ATCC 10876] gi|228592263|gb|EEK50094.1| Deoxyribodipyrimidine photolyase [Bacillus cereus ATCC 10876] Length = 476 Score = 424 bits (1091), Expect = e-116, Method: Composition-based stats. Identities = 159/480 (33%), Positives = 254/480 (52%), Gaps = 22/480 (4%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 +V + D R+ DN AL+ A + + V+ V++ I + +++ +++ VQK Sbjct: 6 IVMFQKDFRLYDNPALFEAVQSGE--VLPVYVQD----ETFSIGSAAKWWLHHAIIDVQK 59 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH- 129 L G + + E + S Q +T +++N Y+ + ++ ++ ++ L+ Sbjct: 60 QLEALGSTLIIRKGNT----QEEILSLIKQLDITAVYWNSCYDPDRLKSNQKMKMMLEDK 115 Query: 130 RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAI--RLTGP 187 +ICK F+ +LL P I YKV+TPF A + ++ + + L Sbjct: 116 GIICKEFNSHLLLEPWIIKKKDNTEYKVFTPFYNAFQKQVIPKPISRVQSIKWGSSLPAS 175 Query: 188 VTPSNIPRFFDYPFQA-IDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246 ++ S + P+ + ++ ++ E+ A +KF K+ Y E RD P S L+ Sbjct: 176 LSVSELHLLPTIPWTSHMEAIWEPTEEGAYKTFKKFFSSKLASYSEGRDFPNQNAHSMLA 235 Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKP-KSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305 PYLS G +S + ++ L + + + S++ +LIWREF +L+ YP + K Sbjct: 236 PYLSFGQISVKLMYHYLINKSTERQCSFFEKQVISFIRQLIWREFSYYLLYHYP-FTVYK 294 Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365 P E WNK+ LL+ W++G TG+P IDA MR+L G+MHNR RM ASFLVK L Sbjct: 295 PLNKNFEHFPWNKEEELLRVWQKGETGYPFIDAGMRELWQTGFMHNRARMAVASFLVKHL 354 Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425 L+ W+ G ++FM LLD D+A+N GWQW A +G D+ PYFRIFNP QG++FD G +I Sbjct: 355 LIPWQEGAKWFMDTLLDADIANNTMGWQWVAGSGADASPYFRIFNPITQGEKFDKNGEYI 414 Query: 426 RHWLPELNNVPTQYIHAPHS----WLDKNDLSLN--YPLPIVDHKKACHHTLNQYYAAKK 479 R W+PEL ++P +YIH P L K ++ L YPLP+V+HK A L Y + K+ Sbjct: 415 RKWVPELRDIPNKYIHKPWEAPEHILQKANIKLGHTYPLPVVEHKAARERALCAYKSMKE 474 >gi|92112598|ref|YP_572526.1| deoxyribodipyrimidine photo-lyase type I [Chromohalobacter salexigens DSM 3043] gi|91795688|gb|ABE57827.1| deoxyribodipyrimidine photo-lyase type I [Chromohalobacter salexigens DSM 3043] Length = 473 Score = 424 bits (1091), Expect = e-116, Method: Composition-based stats. Identities = 196/472 (41%), Positives = 265/472 (56%), Gaps = 9/472 (1%) Query: 10 HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69 +VW R+DLR DN+AL AA VIAVF+ + QW++H A + F + ++ Sbjct: 5 QMVWFRSDLRTLDNRALSAAAERG--PVIAVFLTSIPQWQRHDHGANKIDFWLRGVAALR 62 Query: 70 KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH 129 + LS I + +D++ + L Q T L +NR+Y +NE RRD +E+ Sbjct: 63 EHLSGLNIPLLQRRIETYDEAPDALLKLAHQHGATALHFNREYPLNERRRDAAVERAFHD 122 Query: 130 RVICKS-FDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLR--SLPVPAIRLTG 186 I + D+V PG +L + Y V+TPF KA + L L P P RL Sbjct: 123 AGIAVTGHTDAVAYAPGELLTGKGEPYSVFTPFAKAWHRQLEGHRLALTHAPAPQTRLAI 182 Query: 187 PVTPSNIPRFFDYPFQAID-PMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245 P+ D +D +P G++ A L +F + + +Y QRD PA+ GTS+L Sbjct: 183 EADPAPSRELPDACDTPLDASRWPAGQEEAGDRLERFLRFRGRHYRRQRDFPALPGTSEL 242 Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305 SPYL++G+LS RQC + + L +G +W NELIWREFY H+ A +P + + Sbjct: 243 SPYLALGMLSHRQCLQAVMSDNDGHLADGDAGLTAWANELIWREFYLHIAASFPDISRHR 302 Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365 PF P T + W D +AW +G TG+P++DAAMRQL GWMHNRLRM+TA FL K L Sbjct: 303 PFQPHTRDLAWRDDDAGFRAWCEGRTGYPLVDAAMRQLVQCGWMHNRLRMVTAMFLSKHL 362 Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425 L+DWR GE +FM L+DGD ASNNGGWQWAASTG D+ PYFRIFNPT Q +RFDP+G FI Sbjct: 363 LIDWRRGEAFFMRHLVDGDFASNNGGWQWAASTGTDAAPYFRIFNPTTQAERFDPEGRFI 422 Query: 426 RHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477 HWLPEL + + P + Y LPIVDHK A L+ + + Sbjct: 423 AHWLPELAPLAVKSRFFP---SEAQRRDTGYTLPIVDHKAARQRALDAFKSL 471 >gi|323529228|ref|YP_004231380.1| DNA photolyase FAD-binding protein [Burkholderia sp. CCGE1001] gi|323386230|gb|ADX58320.1| DNA photolyase FAD-binding protein protein [Burkholderia sp. CCGE1001] Length = 499 Score = 424 bits (1091), Expect = e-116, Method: Composition-based stats. Identities = 179/499 (35%), Positives = 258/499 (51%), Gaps = 37/499 (7%) Query: 4 TTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATP-------EQWRQHGIS-- 54 + + LVW R DLR TDN ALY A + + +V VF+ ++W+ Sbjct: 8 NDSFNTGLVWFRRDLRTTDNAALYYALKHCE-RVWCVFVFDTTILQPLVDRWQTRHPGTQ 66 Query: 55 --ARQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQY 112 R+ FI SL ++ ++L +G + D + + Q +V +F N Y Sbjct: 67 AQDRRVEFILGSLRELDEALRAQGGGLVVL----YGDPADLVPKLADQLQVDAVFINHDY 122 Query: 113 EINEVRRDKLLEKRLQHRV-ICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQ 171 E + RD+ + +RL +F D V+ +L + + V+TP++ A ++ L Sbjct: 123 EPAAIERDEAVRERLAETGRTFLTFKDQVIFERAELLTGQKKPFTVFTPYKNAWLKQLTS 182 Query: 172 ADLRSLPVPA----IRLTGPVTPSNIPRFFDYPFQAIDPM---FPIGEQNALHILRKFCK 224 DL+ PV + P +P F + P G + A +L F Sbjct: 183 FDLKPYPVETYATRLASLPPALDRQLPTLEQLGFAPGNLAELDLPTGMRGAQRLLDDFLT 242 Query: 225 EKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNE 284 ++ Y E+RD PA++G S LS +L G +S R E + GA +WL+E Sbjct: 243 -RLDSYAERRDFPAVKGPSYLSVHLRFGTVSIRTLARLAHEMSLQ---PDGRGAATWLSE 298 Query: 285 LIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHL---LQAWKQGYTGFPIIDAAMR 341 LIWR+FY ++A +P + G F +++ W + AW +G TG+P+IDAAM Sbjct: 299 LIWRDFYFMILAHHPRLAGGASFKEEYDRLRWEQGPEADAAFAAWCEGRTGYPLIDAAML 358 Query: 342 QLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGND 401 QLN G+MHNRLRM+TASFLVKDL VDWR+GE YF QL D D A+NNGGWQWAASTG D Sbjct: 359 QLNRTGYMHNRLRMVTASFLVKDLGVDWRLGERYFAEQLNDYDFAANNGGWQWAASTGCD 418 Query: 402 SVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKN------DLSLN 455 + PYFRIFNP Q ++FD G FI+ +LP+L +P ++IHAP + L N Sbjct: 419 AQPYFRIFNPITQSEKFDADGRFIKRYLPQLGKLPAKWIHAPWLAGAQRLAEFGVALGDN 478 Query: 456 YPLPIVDHKKACHHTLNQY 474 YP PIVDH +A TL ++ Sbjct: 479 YPAPIVDHAQARARTLARF 497 >gi|47528471|ref|YP_019820.1| deoxyribodipyrimidine photolyase family protein [Bacillus anthracis str. 'Ames Ancestor'] gi|47503619|gb|AAT32295.1| deoxyribodipyrimidine photolyase family protein [Bacillus anthracis str. 'Ames Ancestor'] Length = 469 Score = 424 bits (1090), Expect = e-116, Method: Composition-based stats. Identities = 158/477 (33%), Positives = 252/477 (52%), Gaps = 22/477 (4%) Query: 14 LRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQKSLS 73 + D R+ DN AL+ A + + V+ V++ + + +++ +++ V+K L Sbjct: 2 FQKDFRLYDNPALFEAAQSGE--VVPVYVHD----ETFSMGSASKWWLHHAIIDVKKQLE 55 Query: 74 QKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHRV-I 132 G + S E + S Q +T +++N Y+ + ++ ++ ++ L+H+ I Sbjct: 56 ALGSTLIIRKGST----QEEILSLVEQLGITAVYWNICYDPDRLQSNQKMKMMLEHKGMI 111 Query: 133 CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPS- 191 CK F+ +LL P I YKV+TPF A + ++ + + + PV+ S Sbjct: 112 CKEFNSHLLLEPWVIKKKDNTEYKVFTPFYNAFQKQVIHKPISKVQSIKGGNSLPVSLSV 171 Query: 192 -NIPRFFDYPFQA-IDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYL 249 + P+ + ++ ++ E+ A ++F K+ Y E RD P S L+PYL Sbjct: 172 SELHLLPTIPWTSHMESIWEPTEEGAYKTWKEFFSSKLASYSEGRDFPNQNAHSMLAPYL 231 Query: 250 SIGVLSPRQCWNRLKEEFVDLLIKP-KSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFI 308 S G +S + ++ L + + + S++ +LIWREF +L+ YP KP Sbjct: 232 SFGQISVKLIYHYLINKSTESQCSLFEKQVNSFIRQLIWREFSYYLLYHYPFTAY-KPLN 290 Query: 309 PWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVD 368 E WN + LL+ W++G TG+P IDA MR+L G+MHNR RM ASFLVK LL+ Sbjct: 291 KSFEHFPWNNEEELLRVWQKGDTGYPFIDAGMRELWQTGFMHNRTRMAVASFLVKHLLIP 350 Query: 369 WRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHW 428 W+ G ++FM LLD D+A+N GWQW A +G D+ PYFRIFNP QG++FD G +IR W Sbjct: 351 WQEGAKWFMDTLLDADIANNTMGWQWVAGSGADASPYFRIFNPITQGEKFDKNGEYIRKW 410 Query: 429 LPELNNVPTQYIHAPHS----WLDKNDLSLN--YPLPIVDHKKACHHTLNQYYAAKK 479 +PEL ++P +YIH P L K ++ L YPLP+VDHK A L Y + K+ Sbjct: 411 VPELKDMPNKYIHKPWEAPEHILQKANIQLGHTYPLPVVDHKAARERALCAYKSMKE 467 >gi|229046850|ref|ZP_04192484.1| Deoxyribodipyrimidine photolyase [Bacillus cereus AH676] gi|229110596|ref|ZP_04240162.1| Deoxyribodipyrimidine photolyase [Bacillus cereus Rock1-15] gi|228672847|gb|EEL28125.1| Deoxyribodipyrimidine photolyase [Bacillus cereus Rock1-15] gi|228724483|gb|EEL75806.1| Deoxyribodipyrimidine photolyase [Bacillus cereus AH676] Length = 476 Score = 424 bits (1090), Expect = e-116, Method: Composition-based stats. Identities = 158/480 (32%), Positives = 249/480 (51%), Gaps = 22/480 (4%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 +V + D R+ DN AL+ A + + V+ V+I Q I + +++ +++ V+K Sbjct: 6 IVMFQKDFRLYDNPALFEAVQSGE--VLPVYI----QEETFSIGSASKWWLHHAVIDVKK 59 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH- 129 L G + E + S Q +T +++N Y+ + ++ ++ ++ L+ Sbjct: 60 QLEALGSTLIIRKGRTE----EEILSLIEQLDITAVYWNICYDPDRLQSNQKMKMMLEDK 115 Query: 130 RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAI--RLTGP 187 +ICK F+ +LL P I YKV+TPF A + ++ + L Sbjct: 116 GIICKEFNSHLLLEPWIIKKKDNTEYKVFTPFYNAFQKQVIPKPFSRVQSIKWGNSLPAS 175 Query: 188 VTPSNIPRFFDYPFQA-IDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246 ++ S + P+ + ++ ++ E+ A +KF K+ Y E RD P S L+ Sbjct: 176 LSVSELQLLPTIPWTSHMEVIWDPTEEGAYKTFKKFFSSKLVSYSEGRDFPGQNVHSMLA 235 Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKP-KSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305 PYLS G +S + ++ L + + + S++ +LIWREF +L+ YP + K Sbjct: 236 PYLSFGQISVKLMFHYLINKSTERQCSLFEKQVNSFIRQLIWREFSYYLLYHYP-FTVYK 294 Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365 P E WNK+ LL+ W++G TG+P IDA MR+L G+MHNR RM ASFLVK L Sbjct: 295 PLNKSFEHFPWNKEEELLRVWQKGKTGYPFIDAGMRELWQTGFMHNRARMAVASFLVKHL 354 Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425 L+ W+ G ++FM LLD D+A+N GWQW A +G D+ PYFRIFNP QG++FD G +I Sbjct: 355 LIPWQEGAKWFMDTLLDADIANNTMGWQWVAGSGADASPYFRIFNPITQGEKFDKNGEYI 414 Query: 426 RHWLPELNNVPTQYIHAPHSWLDK------NDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479 R W+PEL ++P +YI+ P + L YP PIVDHK A L Y + K+ Sbjct: 415 RRWVPELKDIPNKYIYKPWEAPEHILQKSNIKLGDTYPFPIVDHKAARERALCAYKSMKE 474 >gi|254283655|ref|ZP_04958623.1| deoxyribodipyrimidine photo-lyase [gamma proteobacterium NOR51-B] gi|219679858|gb|EED36207.1| deoxyribodipyrimidine photo-lyase [gamma proteobacterium NOR51-B] Length = 477 Score = 424 bits (1090), Expect = e-116, Method: Composition-based stats. Identities = 165/482 (34%), Positives = 246/482 (51%), Gaps = 18/482 (3%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 + W R DLR+TD L AA V+ VFI P + + +++ SL + Sbjct: 4 TTIFWFRQDLRLTDLPGLCAAAERG--AVLPVFIHDPSLGNEWSLGGASQWWLHYSLKSL 61 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL- 127 Q S+ +G + + D L + + + ++ +RQY+ + L + L Sbjct: 62 QASIEARGGELILRRGAPED----VLTALIEESGASAVYSSRQYQPWATSLETTLHETLT 117 Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL--- 184 + K + ++L PGS+L YKV+TPF +A +Q+ + RS+P + Sbjct: 118 DEGIDYKRYAGTLLFEPGSVLTGGGTPYKVFTPFWRACLQSEAPREPRSIPDVEWHVGVR 177 Query: 185 TGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244 + V N+ + ++ GE+ A L F V +Y + RDIPA TS+ Sbjct: 178 SESVEDWNLRPSNPNWADGWESLWSPGEEGATRRLDDFLAGTVKHYGDGRDIPAEAYTSR 237 Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304 LSP+L G +SPRQ W+ + L + +L+E+ WREF L+ +P + Sbjct: 238 LSPHLKFGEISPRQIWHAA-QYAKQRLPEAAESIDKFLSEIGWREFCYTLLDQFPEMP-N 295 Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364 KPF + W L+AW++G TG+PI+DA MR+L G+MHNR+RMIT SFL K Sbjct: 296 KPFKAQFDHFPWAGTQKALKAWQKGLTGYPIVDAGMRELWQTGFMHNRVRMITGSFLTKH 355 Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424 LL WR GE +F L+D D+ASN WQW A +G D+ PYFRIFNP QG++FD G + Sbjct: 356 LLTHWRAGELWFWDCLVDADIASNACSWQWVAGSGADASPYFRIFNPIAQGEKFDKAGEY 415 Query: 425 IRHWLPELNNVPTQYIHAPH----SWLDKNDLSLN--YPLPIVDHKKACHHTLNQYYAAK 478 +R ++PE+ N+P +YIH P S L+++ + L YP PIVDHK A L Y K Sbjct: 416 VRRYVPEIANLPDKYIHKPWEAPASILEQSGIVLGDTYPEPIVDHKSARQSALAAYEEVK 475 Query: 479 KQ 480 Sbjct: 476 NS 477 >gi|16125677|ref|NP_420241.1| deoxyribodipyrimidine photolyase [Caulobacter crescentus CB15] gi|221234432|ref|YP_002516868.1| deoxyribodipyrimidine photolyase [Caulobacter crescentus NA1000] gi|13422791|gb|AAK23409.1| deoxyribodipyrimidine photolyase - classI [Caulobacter crescentus CB15] gi|220963604|gb|ACL94960.1| deoxyribodipyrimidine photolyase [Caulobacter crescentus NA1000] Length = 483 Score = 424 bits (1089), Expect = e-116, Method: Composition-based stats. Identities = 169/472 (35%), Positives = 245/472 (51%), Gaps = 15/472 (3%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 +VW R DLRI DN AL A S VI ++I E + ++ SL + Sbjct: 18 IVWFRKDLRIADNPALRHAAQ-SGRPVIPLYILD-ETPGIRPMGGASLWWLDKSLKSLAA 75 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130 SL G + + E LD Q + +NR Y+ RD ++ L+ R Sbjct: 76 SLETLGTKLVLRKG----VAAEVLDQLIAQSGARSVVWNRLYDKPSTDRDAAIKAALRDR 131 Query: 131 VI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189 + C+SF+ +L P ++ N + Q YKV+TP+ +A ++L + + P + Sbjct: 132 GVDCQSFNAGLLNEPWTVKNGSDQPYKVFTPYWRAAREHLTDVAVTAAPGHLVAPARFPA 191 Query: 190 PSNIPRFFDYPFQAIDP----MFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245 ++ + +P + ++ GE A L F K + Y +QRDIP ++ TS+L Sbjct: 192 SESLASWNLHPTKPDWSKGFDLWTPGEAGAHARLDAFLKGPIKGYGDQRDIPGVEATSKL 251 Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305 SP+L G + PRQ W + D P + A +L+E+ WREF ++ +P + Sbjct: 252 SPHLHFGEIGPRQVWLATRSA-ADQGDIPLAEADKFLSEIGWREFNHSILYNWPHMPSAN 310 Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365 F P + W KD L+AWK+G TG+PI+DA MR+L T G+MHNR+RMI ASFL+K L Sbjct: 311 -FKPEFDGFPWVKDEGALEAWKRGQTGYPIVDAGMRELWTTGFMHNRVRMIVASFLIKHL 369 Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425 ++DWR GE +F LLD DLA+N G WQW A +G D+ PYFRIFNP QG++FDP+G ++ Sbjct: 370 MIDWREGEAWFWDTLLDADLANNVGNWQWTAGSGADAAPYFRIFNPIAQGEKFDPKGDYV 429 Query: 426 RHWLPELNNVPTQYIHAPHSWL--DKNDLSLNYPLPIVDHKKACHHTLNQYY 475 R W+PEL NV IH P + Y PIVDH A L Y+ Sbjct: 430 RRWVPELRNVSDDVIHKPWTKPLHLPAGAKRLYSRPIVDHAMARARALEAYH 481 >gi|242786742|ref|XP_002480865.1| deoxyribodipyrimidine photo-lyase Phr1, putative [Talaromyces stipitatus ATCC 10500] gi|218721012|gb|EED20431.1| deoxyribodipyrimidine photo-lyase Phr1, putative [Talaromyces stipitatus ATCC 10500] Length = 771 Score = 424 bits (1089), Expect = e-116, Method: Composition-based stats. Identities = 172/487 (35%), Positives = 259/487 (53%), Gaps = 21/487 (4%) Query: 11 LVWLRNDLRITDNKALYAA---CHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67 + W + DLR+ DN+AL A ++ ++ ++I +P+ H S + F +L Sbjct: 278 VHWFKGDLRLNDNRALKMASELAAKNEIPLVCMYIMSPQDLTAHCSSPARVDFTLRNLRV 337 Query: 68 VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127 +Q+ L I + E + C Q + LF N +YE++E+RR+ L + L Sbjct: 338 LQRELGTLDIPLYIETQERRRNIPERIGELCEQWGASHLFANIEYEVDELRREAKLVRLL 397 Query: 128 QHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQA---------DLRSL 177 + I ++ DS ++ PG++ + + Y VY+P+ +A + L Q Sbjct: 398 ADKGIAFETAHDSCVVTPGALQSQQGKQYAVYSPWYRAWMGYLHQHGDHNLRVLEPPGKN 457 Query: 178 PVPAIRLTGPVTPSNIP------RFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYV 231 A G + S IP R D Q + M+P GEQ A L +F +V Y Sbjct: 458 HESARSHFGDLFDSQIPGASENRRLSDEEKQRFEKMYPEGEQEARKRLDEFITTRVKEYS 517 Query: 232 EQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFY 291 ++R + Q T+ LSPYL+ GVLS R ++ K+ L + SW++E+ WR+FY Sbjct: 518 KKRSMVDGQYTAILSPYLASGVLSARTAVSKAKDANGGYLDGKNASLASWISEVAWRDFY 577 Query: 292 RHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHN 351 +H++ +P +CM K F P + W D+ L W +G TG+PI+DAAMRQL W+HN Sbjct: 578 KHVLVHWPFICMNKCFKPEFTNVTWEYDTDLFTRWTEGQTGYPIVDAAMRQLRHDAWLHN 637 Query: 352 RLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNP 411 R RMI +SFL KDL++DWR GE YFM L+DGD ASN+GGW + +STG D PYFRIFNP Sbjct: 638 RNRMIVSSFLSKDLMIDWRRGERYFMETLIDGDFASNHGGWGFGSSTGVDPQPYFRIFNP 697 Query: 412 TIQGKRFDPQGTFIRHWLPELNNV-PTQYIHAPHSWLDKNDLSL-NYPLPIVDHKKACHH 469 +Q ++FDP G FIR W+PEL+++ ++ IH P+ YP PIV+H + Sbjct: 698 LLQSEKFDPNGDFIRKWVPELSDIKDSKAIHDPYGRGAGAIAQKAGYPRPIVEHAASRVR 757 Query: 470 TLNQYYA 476 L +Y Sbjct: 758 ALKRYKE 764 >gi|70990122|ref|XP_749910.1| deoxyribodipyrimidine photo-lyase Phr1 [Aspergillus fumigatus Af293] gi|66847542|gb|EAL87872.1| deoxyribodipyrimidine photo-lyase Phr1, putative [Aspergillus fumigatus Af293] gi|159130392|gb|EDP55505.1| deoxyribodipyrimidine photo-lyase Phr1, putative [Aspergillus fumigatus A1163] Length = 586 Score = 424 bits (1089), Expect = e-116, Method: Composition-based stats. Identities = 173/499 (34%), Positives = 263/499 (52%), Gaps = 19/499 (3%) Query: 2 KATTAMSVHLVWLRNDLRITDNKALYAA---CHNSDAKVIAVFIATPEQWRQHGISARQS 58 +A A S + W ++DLR+ DN+AL A + +I ++I +P+ H +S + Sbjct: 87 RAIGANSAVVFWFKSDLRLYDNRALRMAYETAKGCNIPLIGLYILSPQDLTAHLLSPARV 146 Query: 59 HFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVR 118 I +L Q+++ LS+ I + + + C Q L+ N +YE++E+R Sbjct: 147 DLILRTLHQLKRDLSELDIPLYMETQEIRKNIPQRIVDLCQQWGANHLYANLEYEVDELR 206 Query: 119 RDKLLEKRLQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQAD---- 173 R+ L + I ++ D+ ++PPG + + + Y VY+P+ + + L + Sbjct: 207 REAKLVRLCAKNGIKFETAHDACVVPPGQVTSQQGKQYAVYSPWYRTWVAYLNENPGCLE 266 Query: 174 ----LRSLPVPAIRLTGPVTPSN------IPRFFDYPFQAIDPMFPIGEQNALHILRKFC 223 S P A + + S + + Q + ++P GE AL L F Sbjct: 267 VSEEPGSNPGDARKYFKELFESEVPAAPEHKQLSEEEKQHLGHLYPAGEHEALRRLEAFL 326 Query: 224 KEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLN 283 +EK Y E+R++ + Q TS LSPY + G+LS R + L G W+ Sbjct: 327 EEKGRDYAEERNMVSGQTTSILSPYFASGLLSARTAIEHARRANKGSLQHGDPGLVRWIG 386 Query: 284 ELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQL 343 E+ WREFYRH++ +P +CM K F P +EW + AW++G TGFPI+DAAMRQ Sbjct: 387 EVAWREFYRHVLVHWPFICMNKCFKPEFTNLEWEYEEDRFTAWREGKTGFPIVDAAMRQA 446 Query: 344 NTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSV 403 WMHNR RMI ASFL KDLL+DWR GE YFM L+DGD ASN+GGW + +STG D Sbjct: 447 KQDKWMHNRTRMIVASFLSKDLLLDWRRGERYFMETLIDGDFASNHGGWGFGSSTGVDPQ 506 Query: 404 PYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLN-YPLPIVD 462 PYFRIFNP +Q +RFDP G +IR W+PEL ++ IH P++ + N YP P+++ Sbjct: 507 PYFRIFNPLLQSERFDPDGEYIRKWVPELRDIQGAAIHEPYARGGGAIAAKNGYPRPMLN 566 Query: 463 HKKACHHTLNQYYAAKKQS 481 H ++ L++Y A + Sbjct: 567 HSQSRDLALHRYKRASESG 585 >gi|324327109|gb|ADY22369.1| deoxyribodipyrimidine photolyase family protein [Bacillus thuringiensis serovar finitimus YBT-020] Length = 476 Score = 423 bits (1088), Expect = e-116, Method: Composition-based stats. Identities = 159/480 (33%), Positives = 252/480 (52%), Gaps = 22/480 (4%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 +V + D R+ DN AL+ A + + V+ V++ I + +++ +++ VQ+ Sbjct: 6 IVMFQKDFRLYDNPALFEAAQSGE--VVPVYVHD----ETFSIGSASKWWLHHAIIDVQR 59 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130 L G + + +E + S Q +T +++N Y+ ++ ++ ++ L+ + Sbjct: 60 QLEAVGSTLIIRKG----NILEEILSLIKQLGITAVYWNICYDPERLQFNQKMKMMLEDK 115 Query: 131 VI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPA--IRLTGP 187 I CK F+ +LL P I YKV+TPF A + +V + + L Sbjct: 116 GITCKEFNSHLLLEPWVIKKKDNTEYKVFTPFYNAFQKQIVPKPISKVQRIKGGNSLPAS 175 Query: 188 VTPSNIPRFFDYPFQA-IDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246 ++ S + + ++ ++ E+ A +KF K+ Y E RD P S L+ Sbjct: 176 LSVSELHLLPTIRWTTHMESIWDPTEEGAYKTCKKFFSSKLASYSEGRDFPNENAHSMLA 235 Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKP-KSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305 PYLS G +S + ++ L ++ + + S++ +LIWREF +L+ YP + K Sbjct: 236 PYLSFGQISVKWMYHYLIDKSTERQCSLFEKQVNSFIRQLIWREFSYYLLYHYP-FTVYK 294 Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365 P E WNK+ LL W++G TG+P IDA MR+L G+MHNR RM ASFLVK L Sbjct: 295 PLNKNFEHFPWNKEEELLTVWQKGETGYPFIDAGMRELWQTGFMHNRARMAVASFLVKHL 354 Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425 L+ W+ G ++FM LLD D+A+N GWQW A +G D+ PYFRIFNP QG++FD G +I Sbjct: 355 LIPWQEGAKWFMDTLLDADIANNTMGWQWVAGSGADASPYFRIFNPITQGEKFDKNGEYI 414 Query: 426 RHWLPELNNVPTQYIHAPHS----WLDKNDLSLN--YPLPIVDHKKACHHTLNQYYAAKK 479 R W+PEL ++P +YIH P L K ++ L YPLP+VDHK A L Y + K+ Sbjct: 415 RKWVPELRDIPNKYIHKPWEAPEHILQKANIKLGHTYPLPVVDHKAARERALCAYKSMKE 474 >gi|30021247|ref|NP_832878.1| deoxyribodipyrimidine photolyase [Bacillus cereus ATCC 14579] gi|229130975|ref|ZP_04259903.1| Deoxyribodipyrimidine photolyase [Bacillus cereus BDRD-Cer4] gi|29896801|gb|AAP10079.1| Deoxyribodipyrimidine photolyase [Bacillus cereus ATCC 14579] gi|228652473|gb|EEL08383.1| Deoxyribodipyrimidine photolyase [Bacillus cereus BDRD-Cer4] Length = 476 Score = 423 bits (1088), Expect = e-116, Method: Composition-based stats. Identities = 157/480 (32%), Positives = 248/480 (51%), Gaps = 22/480 (4%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 +V + D R+ DN AL+ A + + V+ V+I I + +++ +++ V+K Sbjct: 6 IVMFQKDFRLYDNPALFEAVQSGE--VLPVYIQD----ETFSIGSASKWWLHHAVIDVKK 59 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH- 129 L G + E + S Q +T +++N Y+ + ++ ++ ++ L+ Sbjct: 60 QLEALGSTLIIRKGRTE----EEILSLIEQLDITAVYWNICYDPDRLQSNQKMKMMLEDK 115 Query: 130 RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAI--RLTGP 187 +ICK F+ +LL P I YKV+TPF A + ++ + L Sbjct: 116 GIICKEFNSHLLLEPWIIKKKDNTEYKVFTPFYNAFQKQVIPKPFSRVQSIKWGNSLPAS 175 Query: 188 VTPSNIPRFFDYPFQA-IDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246 ++ S + P+ + ++ ++ E+ A +KF K+ Y E RD P S L+ Sbjct: 176 LSVSELQLLPIIPWTSHMEVIWDPTEEGAYKTFKKFFSSKLVSYSEGRDFPGQNVHSMLA 235 Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKP-KSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305 PYLS G +S + ++ L + + + S++ +LIWREF +L+ YP + K Sbjct: 236 PYLSFGQISVKLMFHYLINKSTERQCSLFEKQVNSFIRQLIWREFSYYLLYHYP-FTVYK 294 Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365 P E W+K+ LL+ W++G TG+P IDA MR+L G+MHNR RM ASFLVK L Sbjct: 295 PLNKSFENFPWDKEEELLRVWQKGKTGYPFIDAGMRELWQTGFMHNRARMAVASFLVKHL 354 Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425 L+ W+ G ++FM LLD D+A+N GWQW A +G D+ PYFRIFNP QG++FD G +I Sbjct: 355 LIPWQEGAKWFMDTLLDADIANNTMGWQWVAGSGADASPYFRIFNPITQGEKFDKNGEYI 414 Query: 426 RHWLPELNNVPTQYIHAPHSWLDK------NDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479 R W+PEL ++P +YIH P + L YP PIVDHK A L Y + K+ Sbjct: 415 RRWVPELRDIPNKYIHKPWEAPEHILQKSNIKLGDTYPFPIVDHKAARERALCAYKSMKE 474 >gi|166363455|ref|YP_001655728.1| DNA photolyase [Microcystis aeruginosa NIES-843] gi|166085828|dbj|BAG00536.1| DNA photolyase [Microcystis aeruginosa NIES-843] Length = 474 Score = 423 bits (1088), Expect = e-116, Method: Composition-based stats. Identities = 170/474 (35%), Positives = 239/474 (50%), Gaps = 14/474 (2%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 L W R DLR++DN L A S K+I VF P I+ + ++ L +++K Sbjct: 6 LFWHRRDLRLSDNIGLSKARERS-PKIIGVFCLDPAILEGDDIAPARVAYLLGCLEELEK 64 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130 + QKG + + + L + +F+N E +RD+ + LQ + Sbjct: 65 NYHQKGSQLLIIRGNPS----QTLVNLAGNLSAKAVFFNLDIEPYARQRDQQVIAALQTK 120 Query: 131 VI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT---G 186 I ++F D +L PG +L + Y VYTPF K Q + + + Sbjct: 121 GIEVETFWDQLLHAPGQVLTLSKSPYTVYTPFWKNWSQLAKASPKTLENLQGLDENEGEK 180 Query: 187 PVTPSNIPRFFDYPFQAIDPM-FPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245 N+P + F +P+ GE+ A L +FC+ + Y E R+ PA GTS+L Sbjct: 181 LTETINLPTLENLGFTWQNPLPLTPGEKAAHSRLEEFCQGVINNYQEDRNFPAFDGTSRL 240 Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDL-LIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304 S L G + R W E + + K +W EL WREFY+H + F+P + +G Sbjct: 241 SAALKFGAIGIRTIWTATLELLENCCAQEAKDSIITWQQELAWREFYQHCLYFFPELAVG 300 Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364 + W + QAW QG TG+PI+DAAMRQLN GWMHNR RMI ASFL KD Sbjct: 301 -AYRKEFRHFPWQDNEEHFQAWCQGKTGYPIVDAAMRQLNETGWMHNRCRMIVASFLTKD 359 Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424 L+++W+ GE+YFM +L DGDLA+NNGGWQW+AS+G D P RIFNP Q ++FDP+G + Sbjct: 360 LIINWQKGEKYFMQKLFDGDLAANNGGWQWSASSGMDPKP-LRIFNPASQTQKFDPEGEY 418 Query: 425 IRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478 IR WLPEL +V T+Y+ YP PIVDH + Y K Sbjct: 419 IRQWLPELASVDTEYLVT-GKIPRLERHRCGYPEPIVDHNQQQKEFKRLYSNQK 471 >gi|163759469|ref|ZP_02166554.1| DNA photolyase [Hoeflea phototrophica DFL-43] gi|162283066|gb|EDQ33352.1| DNA photolyase [Hoeflea phototrophica DFL-43] Length = 484 Score = 423 bits (1088), Expect = e-116, Method: Composition-based stats. Identities = 163/488 (33%), Positives = 246/488 (50%), Gaps = 29/488 (5%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 +VW RNDLR+ DN AL AA + V+ V+I P I + +++ SL ++ Sbjct: 11 PAIVWFRNDLRVNDNAALLAASSHKQ--VVPVYILEPA-ANTRAIGGARKWWLHHSLAKL 67 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128 + L+ G + D + + +++NR+Y+ + D L+ L+ Sbjct: 68 GEKLADLGAPLMLMRG----DPALLIAGLVEKTDAAAVYWNRRYDPAFLSSDASLKDALR 123 Query: 129 HR-VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187 + ++ +SF +L P + YKVY+PF +A+ + + P RLT Sbjct: 124 AQDIVVESFAGQLLHEPTRVRTGNDTFYKVYSPFWRAIEGGIEDREPAPAPD---RLTAL 180 Query: 188 VTPSNIPRFFDYPFQAIDP--------MFPIGEQNALHILRKFCKEKVYYYVEQRDIPAI 239 D+ P + GE A L +F E+V Y RD+P + Sbjct: 181 ANAPQSETLSDWGLLPTKPDWARGLRETWKPGEDGAHERLDEFVSERVCGYASLRDVPGV 240 Query: 240 QGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYP 299 + TS+LSP+L+ G ++P Q LK D K ++ + E+ WREF HL+ P Sbjct: 241 ESTSRLSPHLANGEITPAQIIQALKASDADASPKDRT---VFRKEVGWREFSYHLLVNEP 297 Query: 300 SVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITAS 359 + + W D L AW++G TG+PI+DA MR+L GWMHNR+RM+TAS Sbjct: 298 DLPQQN-HNSRFDGFPWKDDETALLAWQKGVTGYPIVDAGMRELWRTGWMHNRVRMVTAS 356 Query: 360 FLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFD 419 FL K L+VDWR GE +F L+D D ASN WQW A +G D+ PYFR+FNP IQG++FD Sbjct: 357 FLTKHLMVDWREGERWFWDTLVDADPASNAASWQWVAGSGADAAPYFRVFNPIIQGEKFD 416 Query: 420 PQGTFIRHWLPELNNVPTQYIHAPHSWLDKN------DLSLNYPLPIVDHKKACHHTLNQ 473 P G ++R ++PEL N+P+++IH P + D L YP+PIVDH++A + L Sbjct: 417 PDGDYVRRYVPELANLPSKFIHKPWTAPDDALAKAGVHLGETYPMPIVDHQQARNRALAA 476 Query: 474 YYAAKKQS 481 Y K + Sbjct: 477 YEKIKDAA 484 >gi|315046714|ref|XP_003172732.1| deoxyribodipyrimidine photo-lyase [Arthroderma gypseum CBS 118893] gi|311343118|gb|EFR02321.1| deoxyribodipyrimidine photo-lyase [Arthroderma gypseum CBS 118893] Length = 589 Score = 423 bits (1088), Expect = e-116, Method: Composition-based stats. Identities = 176/486 (36%), Positives = 256/486 (52%), Gaps = 19/486 (3%) Query: 11 LVWLRNDLRITDNKALYAA---CHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67 + W + DLR+ DN++L+ A + + +I ++I +PE H S + + +L Sbjct: 100 VHWFKQDLRLQDNRSLHRAYSLARSHNIPLICLYIFSPEDLTAHLCSRPRVDLMLRTLAT 159 Query: 68 VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127 ++ L++K I + + C + +F N +YE++E+RR+ L + Sbjct: 160 LKSELAKKDIPLYMESQEKRKEIPSRIVELCKKWGAKHIFANLEYEVDELRREARLVRLC 219 Query: 128 QHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 + I + DD+ ++ PG++ + Y VYTP+ ++ + L Q V A Sbjct: 220 AEQAIKFATEDDTCVVDPGALATQQGKQYAVYTPWYRSWVAYLKQHPENLDLVDAPGANA 279 Query: 187 PVTPSNIPRFFDYP--------------FQAIDPMFPIGEQNALHILRKFCKEKVYYYVE 232 + FD Q M+P GE A+ LRKF EK Y + Sbjct: 280 GDARKDFKDLFDSDVPKAPDQMKLSETEQQRFRDMYPEGEHEAMQRLRKFLSEKGRQYHD 339 Query: 233 QRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYR 292 +RD + Q TS LSPY S G LS R K+ + L +G +W++E+ WR+FY+ Sbjct: 340 KRDFMSSQSTSVLSPYFSCGALSARTAVRIAKDTNSNELAGKNAGYTTWISEVAWRDFYK 399 Query: 293 HLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNR 352 H++ +P +CM K F P +EW D AW +G TGFPI+DAAMRQL WMHNR Sbjct: 400 HVLVHWPFICMNKCFKPEFTDLEWEYDLTQFDAWCEGRTGFPIVDAAMRQLKHCAWMHNR 459 Query: 353 LRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPT 412 RMI +SFL KDLL+DWR GE++FM L+DGD ASNNGGW + +STG D PYFRIFNP Sbjct: 460 TRMIVSSFLSKDLLIDWRRGEQFFMLHLIDGDFASNNGGWGFGSSTGVDPQPYFRIFNPL 519 Query: 413 IQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLN-YPLPIVDHKKACHHTL 471 Q +RFDP G +IRHW+PEL +V IH P+ + N YP PIV+H ++ L Sbjct: 520 RQSERFDPDGDYIRHWVPELRDVEGSAIHDPYGRGAQKIAEKNGYPKPIVNHSESRGKAL 579 Query: 472 NQYYAA 477 +Y A Sbjct: 580 ERYKKA 585 >gi|317148478|ref|XP_001822264.2| deoxyribodipyrimidine photo-lyase [Aspergillus oryzae RIB40] Length = 588 Score = 423 bits (1088), Expect = e-116, Method: Composition-based stats. Identities = 172/486 (35%), Positives = 255/486 (52%), Gaps = 19/486 (3%) Query: 11 LVWLRNDLRITDNKALYAA---CHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67 + W ++DLR+ DN+AL A +IA++I +PE H S + +L Q Sbjct: 97 VHWFKSDLRLHDNRALRKAYEVAREHSIPLIALYILSPEDLTAHLSSPARVDLTLRTLEQ 156 Query: 68 VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127 ++ L + I + D + + C + LF N +YE++E+RR+ L + Sbjct: 157 LKLDLGELDIPLHMETQESRRDIPQRIIHLCQEWGANHLFANIEYEVDELRREAKLVRLC 216 Query: 128 -QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQAD--------LRSLP 178 ++ + D+ ++PPG + + + Y VY+P+ ++ L+ S P Sbjct: 217 VENGIAFDVLHDTCVVPPGLLSSQQGKQYAVYSPWFRSWQMFLMDNPEHLEVSEEPGSNP 276 Query: 179 VPAIRLTGPVTPS------NIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVE 232 A ++ + S N R D + ++P GE L L F +EK Y + Sbjct: 277 GNARKVFKDLFASEVPGAPNNKRLSDEEREHFRQLYPAGEHEGLDRLESFLEEKATAYDD 336 Query: 233 QRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYR 292 R+ + Q TS LSPY + G LS R + K+ + L + + G SW++E+ WR+FY+ Sbjct: 337 MRNSLSKQTTSVLSPYFASGSLSARTAVAKAKKANKNQLDRNELGFVSWISEVAWRDFYK 396 Query: 293 HLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNR 352 H++ +P +CM K F P +EW + AW +G TGFPI+DAAMRQ+ + WMHNR Sbjct: 397 HVLVRWPFICMNKCFKPEFTDLEWEYNMDYFNAWCEGRTGFPIVDAAMRQMKSSAWMHNR 456 Query: 353 LRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPT 412 RMI ASFL KDLL+DWR GE YFM L+DGD ASN+GGW + +STG D PYFRIF+P Sbjct: 457 SRMIVASFLSKDLLIDWRRGERYFMEHLIDGDFASNHGGWGFGSSTGVDPQPYFRIFSPL 516 Query: 413 IQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLN-YPLPIVDHKKACHHTL 471 Q +RFDP G +IR W+PEL + IH P+ + N YP PIVDH L Sbjct: 517 RQSERFDPDGDYIRRWVPELREIEGSAIHDPYDRGAGDLAEKNGYPRPIVDHATRRALAL 576 Query: 472 NQYYAA 477 ++Y A Sbjct: 577 DRYKKA 582 >gi|119899747|ref|YP_934960.1| deoxyribodipyrimidine photo-lyase [Azoarcus sp. BH72] gi|119672160|emb|CAL96074.1| deoxyribodipyrimidine photo-lyase [Azoarcus sp. BH72] Length = 503 Score = 423 bits (1088), Expect = e-116, Method: Composition-based stats. Identities = 176/492 (35%), Positives = 261/492 (53%), Gaps = 34/492 (6%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGI-SARQSHFIYASL 65 M+V LVW R DLR D+ ALY A + +V F+ + + R+ FI+A++ Sbjct: 24 MTVALVWFRRDLRCVDHAALYHALREHE-RVYCAFVFDTDILDALPTRADRRVEFIHAAV 82 Query: 66 LQVQKSLSQK-------GIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVR 118 +++ ++L G + E + + V ++ NR YE + Sbjct: 83 VELDRALEALSREAGGSGSGLIVRHG----RAQEAIPALAQALGVDAVYVNRDYEPAAIA 138 Query: 119 RDKLLEKRL-QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSL 177 RD+ + +RL +H + F D V+ +L A Q + V+TP++ A ++ L L++ Sbjct: 139 RDRAVAERLAEHGRTLRDFKDQVIFDRDEVLTQAGQPFSVFTPYKNAWLRKLDPFYLQAY 198 Query: 178 PV--PAIRLTGPVTPSNIPRFFDYPFQAIDP---MFPIGEQNALHILRKFCKEKVYYYVE 232 P+ A RL +P F+ D P G A + FC ++ Y Sbjct: 199 PIAPRARRLAPKPAGEGVPALGRIGFEPTDLRGLALPTGASGARALFGDFC-GRIEDYRI 257 Query: 233 QRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYR 292 RD PA++G S LS +L G + R+ + + +GA +WL+ELIWR+FY+ Sbjct: 258 ARDFPAVKGVSYLSTHLRFGTIPVRELAAY-------AVHQGGAGAQTWLSELIWRDFYQ 310 Query: 293 HLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNR 352 ++ +P V + + F P ++I W+ L AW++G TG+PI+DA MRQL G+MHNR Sbjct: 311 MILWHHPRV-VDQAFRPEFDRIRWDDAPALFDAWREGRTGYPIVDAGMRQLLRSGYMHNR 369 Query: 353 LRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPT 412 LRMI ASFL KDL VDWR+GE +F + L D DLA+NNGGWQWAASTG D+ PYFRIFNP Sbjct: 370 LRMIVASFLTKDLGVDWRLGERHFAAHLNDYDLAANNGGWQWAASTGCDAQPYFRIFNPV 429 Query: 413 IQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKN------DLSLNYPLPIVDHKKA 466 Q ++FDP+G FIR ++PEL VP ++IHAP + +YP P+VDH A Sbjct: 430 TQSQKFDPEGRFIRRYVPELARVPDRHIHAPWQMDAATQSRACVQIGRDYPAPVVDHALA 489 Query: 467 CHHTLNQYYAAK 478 TL ++ K Sbjct: 490 RERTLARFAVTK 501 >gi|330817717|ref|YP_004361422.1| Deoxyribodipyrimidine photolyase [Burkholderia gladioli BSR3] gi|327370110|gb|AEA61466.1| Deoxyribodipyrimidine photolyase [Burkholderia gladioli BSR3] Length = 487 Score = 423 bits (1087), Expect = e-116, Method: Composition-based stats. Identities = 159/495 (32%), Positives = 247/495 (49%), Gaps = 24/495 (4%) Query: 1 MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHF 60 M A ++ +VW R+DLR+TDN AL A S + V++ E R G +AR + Sbjct: 1 MPAESSAQAAIVWFRDDLRLTDNPALARAAE-SGRPFVCVYVLEREGTRPLGGAAR--WW 57 Query: 61 IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120 + +L + SL+ G + E + + + +++NR+Y+ D Sbjct: 58 LDGALRSLDASLAGHGGRLLVLEGDER----ETIAALAEELDAGAVYWNRRYDGIARETD 113 Query: 121 KLLEKRLQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPV 179 L++ L+ I +SF+ ++L P + + ++V+T + +A +++ + + P Sbjct: 114 GALKRSLKEAGIEAESFNGALLREPWELQTGSGGAFQVFTAYWRAALKSGDVSAPLAEPS 173 Query: 180 PAIRLTGPVTPSNIPRFFD-YPFQAIDPMFPIG--------EQNALHILRKFCKEKVYYY 230 T P + + D P + G E+ AL +L +F +K+ Y Sbjct: 174 TWRFHTLPASLARRALKIDALGLLPTRPDWAGGLREAWVPTEEAALELLERFLDKKIRGY 233 Query: 231 VEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREF 290 E RD P TS+LSPYL G LS RQ W+ + + +++EL WREF Sbjct: 234 GEARDRPDRPATSRLSPYLRFGQLSARQVWHAAMAAAREGGAAVAADIEKFVSELGWREF 293 Query: 291 YRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMH 350 L+ +P + + + + + W D AW +G TG+P++DA MR+L T GWMH Sbjct: 294 DTSLLYHFPELPT-RNYRERFDAMPWRDDEAGFTAWCRGRTGYPLVDAGMRELWTTGWMH 352 Query: 351 NRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFN 410 NR+RM+ ASFL+K LL+DWR GE +F L+D D+A+N+ WQW A G D+ PYFRIFN Sbjct: 353 NRVRMVVASFLIKHLLIDWRAGERWFWDTLVDADIANNSANWQWVAGCGADAAPYFRIFN 412 Query: 411 PTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHS----WLDKND--LSLNYPLPIVDHK 464 P QG++FDP+G ++R W+PEL +P IH P L+ L YP PIVDH Sbjct: 413 PVTQGRKFDPEGDYVRRWVPELARLPADAIHEPWRAKPIVLEAAGVVLGQTYPEPIVDHD 472 Query: 465 KACHHTLNQYYAAKK 479 A L K+ Sbjct: 473 AARQRALGALELTKR 487 >gi|47564301|ref|ZP_00235346.1| deoxyribodipyrimidine photolyase classI [Bacillus cereus G9241] gi|47558453|gb|EAL16776.1| deoxyribodipyrimidine photolyase classI [Bacillus cereus G9241] Length = 476 Score = 422 bits (1086), Expect = e-116, Method: Composition-based stats. Identities = 158/480 (32%), Positives = 250/480 (52%), Gaps = 22/480 (4%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 ++ + D R+ DN AL+ A + + V+ V++ I + +++ +++ VQK Sbjct: 6 IMMFQKDFRLYDNPALFEAAQSGE--VVPVYVQD----ETFSIGSAAKWWLHHAIIDVQK 59 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH- 129 L G F + E + S Q +T +++N YE + ++ ++ ++ L+ Sbjct: 60 QLKALGATFIIRKGKT----QEEILSLIEQLDITAVYWNICYEPDRLQSNQKMKMMLEDK 115 Query: 130 RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAI--RLTGP 187 +ICK F+ +LL P I YKV+TPF A + + + L Sbjct: 116 GIICKEFNSHLLLEPWIIKKKDNTEYKVFTPFYNAFQKQAIPKPTSKVQSIKWGSSLPAS 175 Query: 188 VTPSNIPRFFDYPFQA-IDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246 ++ S + P+ + ++ ++ E+ A +KF K+ +Y E RD P S L+ Sbjct: 176 LSVSELHLLPTIPWTSHMESIWNPTEEGAYKTFKKFFSSKLTFYSEGRDFPNQNVHSMLA 235 Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKP-KSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305 PYLS G +S + ++ L + + + S++ +LIWREF +L+ YP + K Sbjct: 236 PYLSFGQISVKLMFHYLINKSTERQSSLFEKQVNSFIRQLIWREFSYYLLYHYP-FTVYK 294 Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365 P E W+K+ LL+ W++G TG+P IDA MR+L G+MHNR RM ASFLVK L Sbjct: 295 PLNKNFEHFPWDKEEELLRVWQKGETGYPFIDAGMRELWQTGFMHNRARMAVASFLVKHL 354 Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425 L+ W+ G ++FM LLD D+A+N GWQW A +G D+ PYFRIFNP QG++FD G +I Sbjct: 355 LIPWQEGAKWFMDTLLDADIANNTMGWQWVAGSGADASPYFRIFNPITQGEKFDKDGEYI 414 Query: 426 RHWLPELNNVPTQYIHAPHSWLDK------NDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479 R W+PEL ++P +YIH P + L YPLP+VDHK A L Y + K+ Sbjct: 415 RKWVPELRDIPNKYIHKPWEAPEPILQKANIQLGDTYPLPVVDHKAARERALCAYKSMKE 474 >gi|329133694|gb|AEB78728.1| DNA photolyase [Acinetobacter sp. Ver3] Length = 470 Score = 422 bits (1086), Expect = e-116, Method: Composition-based stats. Identities = 184/474 (38%), Positives = 269/474 (56%), Gaps = 9/474 (1%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 ++L+ DLR+ DN AL A + ++ AV I + EQW+ H S + F L V Sbjct: 1 MNLIGFSQDLRVRDNTALMEATRHGNS--CAVVILSHEQWKLHDDSEIKIDFYLRQLKSV 58 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128 + L Q I ++D L ++ + +VT + N + +NE+ RD ++ L+ Sbjct: 59 ENELKQFNIPVMVEIVPQWEDVPARLLTFANKYQVTVIHANIEIGVNELHRDAQVQTLLE 118 Query: 129 -HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187 H+V + + D + P GSI N Q Y+V +++A + L + L+ L VP ++ Sbjct: 119 SHKVTVEYYHDRTIFPLGSIRNKTHQPYQVLGAYKRACYEILNISVLQPLAVPKVQPHEL 178 Query: 188 VTPSNIPRFFD----YPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS 243 + + + YP + +P+GE AL +L KF E + Y +QRD P I TS Sbjct: 179 IQRFHTFKIPSIHDFYPDAQVKYQWPVGESFALQMLEKFVDENLEPYKQQRDFPNIDATS 238 Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCM 303 QLSPYL++G++S RQC + G +WL+EL+WREFY+H++ +P + Sbjct: 239 QLSPYLNLGIVSIRQCLAAIFSRSNGNFHLYSDGQQTWLDELLWREFYQHILFDFPRLSK 298 Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363 +PF T + W L AWK G TG PI+DA +RQ+ GWMHNR+RMI A FL K Sbjct: 299 YQPFNLNTSNVPWRDAPDELNAWKFGQTGIPIVDAGIRQMLETGWMHNRVRMIVAMFLSK 358 Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423 +LL+DWR GE++FM L+DGDLA+NNGGWQW ASTG D+VPYFRIFNP Q ++FD QG Sbjct: 359 NLLIDWRKGEQWFMQHLIDGDLAANNGGWQWCASTGTDAVPYFRIFNPISQSQKFDSQGN 418 Query: 424 FIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477 +IR W+PEL ++ + IH P++ +L LNYP PIVD K + L + +A Sbjct: 419 YIRKWVPELAHLDAKIIHEPYA--KNPNLKLNYPKPIVDLKMSRQRALAAFKSA 470 >gi|229151347|ref|ZP_04279551.1| Deoxyribodipyrimidine photolyase [Bacillus cereus m1550] gi|228632137|gb|EEK88762.1| Deoxyribodipyrimidine photolyase [Bacillus cereus m1550] Length = 476 Score = 422 bits (1086), Expect = e-116, Method: Composition-based stats. Identities = 160/480 (33%), Positives = 253/480 (52%), Gaps = 22/480 (4%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 +V + D R+ DN AL+ A + + V+ V+I I + +++ +++ VQK Sbjct: 6 IVMFQKDFRLYDNPALFEAVQSGE--VLPVYIQD----ETFSIGSAAKWWLHHAIIDVQK 59 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH- 129 L G + + E + S Q +T +++N Y+ + ++ ++ ++ L+ Sbjct: 60 QLEALGSTLIIRKGNT----QEEILSLIKQLDITAVYWNSCYDPDRLKSNQKMKMILEDK 115 Query: 130 RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP-- 187 +ICK F+ +LL P I YKV+TPF A + ++ + + + P Sbjct: 116 GIICKEFNSHLLLEPWIIKKKDNTEYKVFTPFYNAFQKQVIPKPISRVQSIKWGSSLPTS 175 Query: 188 VTPSNIPRFFDYPFQA-IDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246 ++ S + P+ + ++ ++ E+ A +KF K+ Y E RD P S L+ Sbjct: 176 LSVSELHLLPTIPWTSHMEAIWDPTEEGAYKTFKKFFSSKLVSYSEGRDFPDQNVHSMLA 235 Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKP-KSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305 PYLS +S + ++ L + + + S++ +LIWREF +L+ YP + K Sbjct: 236 PYLSFSQISVKLMFHYLINKSTERQCSLFEKQVNSFIRQLIWREFSYYLLYHYP-FTVYK 294 Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365 P E WNK+ LL+ W++G TG+P IDA MR+L G+MHNR RM ASFLVK L Sbjct: 295 PLNKSFEHFPWNKEEELLRVWQKGETGYPFIDAGMRELWQTGFMHNRARMAVASFLVKHL 354 Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425 L+ W+ G ++FM LLD D+A+N GWQW A +G D+ PYFRIFNP QG++FD G +I Sbjct: 355 LIPWQEGAKWFMDTLLDADIANNTMGWQWVAGSGADASPYFRIFNPITQGEKFDKNGEYI 414 Query: 426 RHWLPELNNVPTQYIHAPHS----WLDKNDLSLN--YPLPIVDHKKACHHTLNQYYAAKK 479 R W+PEL ++P +YIH P L K ++ L YP PIVDHK A L Y + K+ Sbjct: 415 RKWVPELRDIPNKYIHKPWEAPEHILQKANIKLGNTYPYPIVDHKAARERALCAYKSMKE 474 >gi|332141440|ref|YP_004427178.1| deoxyribodipyrimidine photo-lyase [Alteromonas macleodii str. 'Deep ecotype'] gi|327551462|gb|AEA98180.1| deoxyribodipyrimidine photo-lyase [Alteromonas macleodii str. 'Deep ecotype'] Length = 474 Score = 422 bits (1085), Expect = e-116, Method: Composition-based stats. Identities = 161/484 (33%), Positives = 240/484 (49%), Gaps = 25/484 (5%) Query: 8 SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67 V ++W R DLR+ DN AL AAC K++ ++I +++ SL Sbjct: 4 PVSIMWFRQDLRVKDNPALNAACDMG--KIVPIYIFDESAPDGRMPGGASKWWLHHSLKS 61 Query: 68 VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK-R 126 + K L+ +F+ D + + +F+NR YE ++ RDK ++K Sbjct: 62 LNKRLNGHLQIFK-------GDPQTLIPKLMESFNASSIFWNRCYEPWQINRDKAIKKSL 114 Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPF-RKALIQNLVQADLRSLPVPAIRLT 185 L SF+ S L P +L Y+V+TP+ + +Q ++ P Sbjct: 115 LGSDYEAHSFNGSSLWEPMKVLKKDGTPYRVFTPYYKNGCLQIEEPRYPKAPPARITYAD 174 Query: 186 GPVTPSNIPRFFDYPF----QAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQG 241 + P I + GE A L F + Y + RDIP+ +G Sbjct: 175 VDDNSDGLAALALLPTIKWDDTIAKEWTPGEDGAADNLSDFIENSARRYKDGRDIPSAKG 234 Query: 242 TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSV 301 TS+LSP+L G +SP Q W +K+ F ++L+EL WREF +L+ +P++ Sbjct: 235 TSRLSPHLHFGEVSPNQVWYAIKDRF---GTSEDKSIETYLSELGWREFSYYLLFHFPTL 291 Query: 302 CMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFL 361 K F +K W D+ L+AW+ G TG PI+DA MR+L G+MHNR+RMI SFL Sbjct: 292 P-NKNFNDKFDKFPWRTDAKALKAWQTGNTGIPIVDAGMRELWQTGYMHNRVRMIVGSFL 350 Query: 362 VKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQ 421 VK+LL+ W GE +F LLD DLASN+ WQW A +G D+ PYFRIFNP +QG++FD + Sbjct: 351 VKNLLLSWHEGERWFWDTLLDADLASNSASWQWVAGSGADAAPYFRIFNPILQGEKFDKK 410 Query: 422 GTFIRHWLPELNNVPTQYIHAPHSWLDK------NDLSLNYPLPIVDHKKACHHTLNQYY 475 G ++R + PELN + +YIH P +L +YP PIVD K + L+ + Sbjct: 411 GGYVRQYCPELNGLSDKYIHKPWEAPSAILKEAGVELGKDYPKPIVDLKASRQRALDAFQ 470 Query: 476 AAKK 479 K+ Sbjct: 471 TLKE 474 >gi|228959394|ref|ZP_04121085.1| Deoxyribodipyrimidine photolyase [Bacillus thuringiensis serovar pakistani str. T13001] gi|228800294|gb|EEM47220.1| Deoxyribodipyrimidine photolyase [Bacillus thuringiensis serovar pakistani str. T13001] Length = 476 Score = 422 bits (1085), Expect = e-116, Method: Composition-based stats. Identities = 157/480 (32%), Positives = 248/480 (51%), Gaps = 22/480 (4%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 +V + D R+ DN AL+ A + + V+ V+I I + +++ +++ V+K Sbjct: 6 IVMFQKDFRLYDNLALFEAVQSGE--VLPVYIQD----ETFSIGSASKWWLHHAVIDVKK 59 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH- 129 L G + E + S Q +T +++N Y+ + ++ ++ ++ L+ Sbjct: 60 QLEALGSTLIIRKGRTE----EEILSLIEQLDITAVYWNICYDPDRLQSNQKMKMMLEDK 115 Query: 130 RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAI--RLTGP 187 +ICK F+ +LL P I YKV+TPF A + ++ + L Sbjct: 116 GIICKEFNSHLLLEPWIIKKKDNTEYKVFTPFYNAFQKQVIPKPFSRVQSIKWGNSLPAS 175 Query: 188 VTPSNIPRFFDYPFQA-IDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246 ++ S + P+ + ++ ++ E+ A +KF K+ Y E RD P S L+ Sbjct: 176 LSVSELQLLPTIPWTSHMEVIWDPTEEGAYKTFKKFFSSKLVSYSEGRDFPGQNVHSMLA 235 Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKP-KSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305 PYLS G +S + ++ L + + + S++ +LIWREF +L+ YP + K Sbjct: 236 PYLSFGQISVKLMFHYLINKSTERQCSLFEKQVNSFIRQLIWREFSYYLLYHYP-FTVYK 294 Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365 P E W+K+ LL+ W++G TG+P IDA MR+L G+MHNR RM ASFLVK L Sbjct: 295 PLNKSFENFPWDKEEELLRVWQKGKTGYPFIDAGMRELWQTGFMHNRARMAVASFLVKHL 354 Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425 L+ W+ G ++FM LLD D+A+N GWQW A +G D+ PYFRIFNP QG++FD G +I Sbjct: 355 LIPWQEGAKWFMDTLLDADIANNTMGWQWVAGSGADASPYFRIFNPITQGEKFDKNGEYI 414 Query: 426 RHWLPELNNVPTQYIHAPHSWLDK------NDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479 R W+PEL ++P +YIH P + L YP PIVDHK A L Y + K+ Sbjct: 415 RRWVPELRDIPNKYIHKPWEAPEHILQKSNIKLGDTYPYPIVDHKAARERALCAYKSMKE 474 >gi|228940236|ref|ZP_04102807.1| Deoxyribodipyrimidine photolyase [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228973152|ref|ZP_04133742.1| Deoxyribodipyrimidine photolyase [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228979734|ref|ZP_04140058.1| Deoxyribodipyrimidine photolyase [Bacillus thuringiensis Bt407] gi|228780047|gb|EEM28290.1| Deoxyribodipyrimidine photolyase [Bacillus thuringiensis Bt407] gi|228786555|gb|EEM34544.1| Deoxyribodipyrimidine photolyase [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228819362|gb|EEM65416.1| Deoxyribodipyrimidine photolyase [Bacillus thuringiensis serovar berliner ATCC 10792] gi|326940880|gb|AEA16776.1| deoxyribodipyrimidine photolyase [Bacillus thuringiensis serovar chinensis CT-43] Length = 476 Score = 422 bits (1085), Expect = e-116, Method: Composition-based stats. Identities = 158/480 (32%), Positives = 249/480 (51%), Gaps = 22/480 (4%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 +V + D R+ DN AL+ A + + V+ V+I Q I + +++ +++ V+K Sbjct: 6 IVMFQKDFRLYDNPALFEAVQSGE--VLPVYI----QEETFSIGSASKWWLHHAVIDVKK 59 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH- 129 L G + E + S Q +T +++N Y+ + ++ ++ ++ L+ Sbjct: 60 QLEALGSTLIIRKGRTE----EEILSLIEQLDITAVYWNICYDPDRLQSNQKMKMMLEDK 115 Query: 130 RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAI--RLTGP 187 +ICK F+ +LL P I YKV+TPF A + ++ + + L Sbjct: 116 GIICKEFNSHLLLEPWVIKKKDNTEYKVFTPFYNAFQKQVIPKPISRVQSIKWGNSLPAS 175 Query: 188 VTPSNIPRFFDYPFQA-IDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246 ++ S + P+ + ++ ++ E+ A +KF K+ Y E RD P S L+ Sbjct: 176 LSVSELHLLPTIPWTSHMEVIWDPTEEGAYKTFKKFFSSKLVSYSEGRDFPDQNVHSMLA 235 Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKP-KSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305 PYLS G +S + ++ L + + + S++ +LIWREF +L+ YP + + Sbjct: 236 PYLSFGQISVKLMFHYLINKSTERQCSLFEKQVNSFIRQLIWREFSYYLLYHYP-FTVYR 294 Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365 P E WNK+ LL+ W++G TG+P IDA MR+L G+MHNR RM ASFLVK L Sbjct: 295 PLNKSFENFPWNKEEELLRVWQKGKTGYPFIDAGMRELWQTGFMHNRARMAVASFLVKHL 354 Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425 L+ W+ G ++FM LLD D+A+N GWQW A +G D+ PYFRIFNP QG++FD G +I Sbjct: 355 LIPWQEGAKWFMDTLLDADIANNTMGWQWVAGSGADASPYFRIFNPITQGEKFDKNGEYI 414 Query: 426 RHWLPELNNVPTQYIHAPHSWLDK------NDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479 R W+PEL +P +YIH P + L YP PIVDHK A L Y + K+ Sbjct: 415 RRWVPELRYIPNKYIHKPWEAPEHILQKSNIKLGDTYPYPIVDHKAARERALCAYKSMKE 474 >gi|229075148|ref|ZP_04208142.1| Deoxyribodipyrimidine photolyase [Bacillus cereus Rock4-18] gi|228707925|gb|EEL60104.1| Deoxyribodipyrimidine photolyase [Bacillus cereus Rock4-18] Length = 476 Score = 422 bits (1085), Expect = e-116, Method: Composition-based stats. Identities = 157/480 (32%), Positives = 252/480 (52%), Gaps = 22/480 (4%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 +V + D R+ DN AL+ A + + V+ V++ + + +++ +++ V+K Sbjct: 6 IVMFQKDFRLYDNPALFEAAQSGE--VVPVYVHD----ETFPMGSASKWWLHHAIIDVKK 59 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130 L G + + E + S Q +T +++N Y+ + ++ ++ ++ L+ + Sbjct: 60 QLETLGSTLIIRKGNT----QEEIFSLIEQLGITAVYWNICYDPDRLQSNQKMKMMLEDK 115 Query: 131 VI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAI--RLTGP 187 I CK F+ +LL P I YKV+TPF A + ++ + + L Sbjct: 116 GIVCKEFNSHLLLEPWIIKKKDNTEYKVFTPFYNAFQKQVIPKPISRVQSIKWGNSLPAS 175 Query: 188 VTPSNIPRFFDYPFQA-IDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246 + S + P+ + ++ ++ E+ A +KF K+ Y E RD P S L+ Sbjct: 176 LFVSELHLLPTIPWTSHMEVIWDPTEEGAYKTFKKFFSSKLVSYSEGRDFPNQNVHSMLA 235 Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKP-KSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305 PYLS G +S + ++ L + + + S++ +LIWREF +L+ YP + K Sbjct: 236 PYLSFGQISVKLMFHYLINKSTERQCSLFEKQVNSFIRQLIWREFSYYLLYHYP-FTVYK 294 Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365 P E W+K+ LL+ W++G TG+P IDA MR+L G+MHNR RM ASFLVK L Sbjct: 295 PLNKSFENFPWDKEEELLRVWQKGKTGYPFIDAGMRELWQTGFMHNRARMAVASFLVKHL 354 Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425 L+ W+ G ++FM LLD D+A+N GWQW A +G D+ PYFRIFNP QG++FD G +I Sbjct: 355 LIPWQEGAKWFMDTLLDADIANNTMGWQWVAGSGADASPYFRIFNPITQGEKFDKNGEYI 414 Query: 426 RHWLPELNNVPTQYIHAPHS----WLDKNDLSLN--YPLPIVDHKKACHHTLNQYYAAKK 479 R W+PEL ++P +YIH P L K ++ L YP PIVDHK A L Y + K+ Sbjct: 415 RRWVPELRDIPNKYIHKPWEAPEHILQKANIQLGHTYPFPIVDHKAARERALCAYKSMKE 474 >gi|229070649|ref|ZP_04203886.1| Deoxyribodipyrimidine photolyase [Bacillus cereus F65185] gi|229080332|ref|ZP_04212857.1| Deoxyribodipyrimidine photolyase [Bacillus cereus Rock4-2] gi|228703001|gb|EEL55462.1| Deoxyribodipyrimidine photolyase [Bacillus cereus Rock4-2] gi|228712471|gb|EEL64409.1| Deoxyribodipyrimidine photolyase [Bacillus cereus F65185] Length = 476 Score = 422 bits (1085), Expect = e-116, Method: Composition-based stats. Identities = 160/480 (33%), Positives = 252/480 (52%), Gaps = 22/480 (4%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 +V + D R+ DN AL+ A + + V+ V++ I + ++ +++ VQK Sbjct: 6 IVMFQKDFRLYDNPALFEAVQSGE--VLPVYVQD----ETFSIGSAAKWWLRHAIMDVQK 59 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH- 129 L G + + E + S Q +T +++N Y+ + ++ ++ ++ L+ Sbjct: 60 QLKALGSTLIIRKGNT----QEEILSLIKQLDITAVYWNSCYDPDRLKSNQKMKMILEDK 115 Query: 130 RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAI--RLTGP 187 +ICK F+ +LL P I YKV+TPF A + ++ + + L Sbjct: 116 GIICKEFNSHLLLEPWIIKKKDNTEYKVFTPFYNAFQKQVIPKPISRVQSIKWGNSLPAS 175 Query: 188 VTPSNIPRFFDYPFQA-IDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246 ++ S + P+ + ++ ++ E+ A +KF K+ Y E RD P S L+ Sbjct: 176 LSVSELHLLPTIPWTSHMEAIWDPTEEGAYKTFKKFFSSKLVSYSEGRDFPDQNVHSMLA 235 Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKP-KSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305 PYLS G +S + ++ L + + + S++ +LIWREF +L+ YP + K Sbjct: 236 PYLSFGQISVKLMFHYLINKSTERQCSLFEKQVNSFIRQLIWREFSYYLLYHYP-FTVYK 294 Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365 P E WNK+ LL+ W++G TG+P IDA MR+L G+MHNR RM ASFLVK L Sbjct: 295 PLNKSFEHFPWNKEEELLRVWQKGETGYPFIDAGMRELWQTGFMHNRARMAVASFLVKHL 354 Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425 L+ W+ G ++FM LLD D+A+N GWQW A +G D+ PYFRIFNP QG++FD G +I Sbjct: 355 LIPWQEGAKWFMDTLLDADIANNTMGWQWVAGSGADASPYFRIFNPITQGEKFDKNGEYI 414 Query: 426 RHWLPELNNVPTQYIHAPHS----WLDKNDLSLN--YPLPIVDHKKACHHTLNQYYAAKK 479 R W+PEL ++P +YIH P L K+++ L YP PIVDHK A L Y K+ Sbjct: 415 RRWVPELRDIPNKYIHKPWEAPEHILQKSNIKLGNTYPYPIVDHKAARERALCAYKNMKE 474 >gi|67516211|ref|XP_657991.1| hypothetical protein AN0387.2 [Aspergillus nidulans FGSC A4] gi|40747330|gb|EAA66486.1| hypothetical protein AN0387.2 [Aspergillus nidulans FGSC A4] gi|259489370|tpe|CBF89585.1| TPA: DNA photolyase (Eurofung) [Aspergillus nidulans FGSC A4] Length = 567 Score = 422 bits (1085), Expect = e-116, Method: Composition-based stats. Identities = 173/499 (34%), Positives = 263/499 (52%), Gaps = 21/499 (4%) Query: 3 ATTAMSVHLVWLRNDLRITDNKALYAA---CHNSDAKVIAVFIATPEQWRQHGISARQSH 59 A TA + + W ++DLR+ DN+AL A +I ++I +PE H S + Sbjct: 70 AMTANAAVVHWFKSDLRLHDNRALQMAYRVAREHKIPLIGLYILSPEDLTAHLSSPARVD 129 Query: 60 FIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRR 119 +L Q+++ L + + + D + + C + LF N +YE++E+RR Sbjct: 130 LTLRTLEQLKRDLGELDVPLYMETQACRKDIPRRIINLCQEWGANHLFANLEYEVDELRR 189 Query: 120 DKLLEKRLQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQA------ 172 + L + I ++ D ++PPG + + + Y VY+P+ ++ + L + Sbjct: 190 EAKLIRLCAENGIRFETAHDMCVVPPGVLSSQQGRQYAVYSPWFRSWLAFLNENPEYLEV 249 Query: 173 --DLRSLPVPAIRLTG-------PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFC 223 D S P A R P TP N + FP GE L L +F Sbjct: 250 SEDPTSNPGDARRYFKELFECPVPATPENKRFDDVEKADRVRRAFPAGEHEGLRRLEEFL 309 Query: 224 KEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLN 283 ++ Y ++R+ + + TS+LSPY + G LS R + +E + + ++G SW++ Sbjct: 310 EKATA-YDDERNFLSGETTSKLSPYFASGSLSARTAVAKAREANAGKISRGEAGYISWIS 368 Query: 284 ELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQL 343 E+ WR+FY+H++ +P +CM K F I+W+ ++ +AW G TG+P++DAAMRQL Sbjct: 369 EVAWRDFYKHVLVHWPFICMNKCFKFEFTNIDWSYNNTHFEAWAAGKTGYPLVDAAMRQL 428 Query: 344 NTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSV 403 + WMHNR RM+ +SFL KDLL+DWR GE YFM L+DGD ASN+GGW + +STG D Sbjct: 429 HATAWMHNRCRMVVSSFLCKDLLIDWRRGERYFMEHLIDGDFASNHGGWGFGSSTGVDPQ 488 Query: 404 PYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLN-YPLPIVD 462 PYFRIFNP Q +RFDP G FIR W+PEL V IHAP+ + N YP PIVD Sbjct: 489 PYFRIFNPIRQSERFDPDGEFIRRWVPELRGVEGNAIHAPYERGAGDIARANGYPEPIVD 548 Query: 463 HKKACHHTLNQYYAAKKQS 481 H + L +Y A + + Sbjct: 549 HARQRGVALRKYKDAARGA 567 >gi|224823842|ref|ZP_03696951.1| Deoxyribodipyrimidine photo-lyase [Lutiella nitroferrum 2002] gi|224604297|gb|EEG10471.1| Deoxyribodipyrimidine photo-lyase [Lutiella nitroferrum 2002] Length = 469 Score = 422 bits (1085), Expect = e-116, Method: Composition-based stats. Identities = 173/481 (35%), Positives = 257/481 (53%), Gaps = 22/481 (4%) Query: 8 SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67 + L W R DLR+ D+ ALYAA +S+ +V+ VF+ + + R+ FI+ SL++ Sbjct: 3 TTALCWFRRDLRLDDHAALYAALRHSE-RVVCVFVFDRDILKHLPAQDRRVDFIWHSLVE 61 Query: 68 VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127 +++ L G D + + + + ++ +R YE RD + +RL Sbjct: 62 LKEQLCALGSDLVVVSGRPVDC----IPALAQEHGASTVWASRDYEPAACLRDAAVAERL 117 Query: 128 -QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPA-IRLT 185 +H ++ D V+ +L + Y V+TP+R A ++ L L++ P + Sbjct: 118 SRHGTRLETVKDQVIFEQDEVLTVNSKPYTVFTPYRNAWLKKLTPFFLQAYPSTRYLNRL 177 Query: 186 GPVTPSNIPRFFDYPFQAI---DPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGT 242 + + +P D F G A + F +++ +Y + RD PA +G Sbjct: 178 ARLAETPLPSLADLGFTDTGLGRLGIRAGMAGAAAVFTDF-GQRIEHYQQWRDFPAAKGV 236 Query: 243 SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVC 302 S LS +L G +S RQ ++ +GA +WL+ELIWREFY+ L+ YP V Sbjct: 237 SYLSVHLRFGTISIRQLAQFAWQQ-------GSAGATTWLSELIWREFYQQLLWHYPHV- 288 Query: 303 MGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLV 362 + + F P ++ + D L AW G TG+P++DAAMRQL G+MHNRLRM+TASFLV Sbjct: 289 VEESFKPEYRQLGFPNDETLFAAWCAGRTGYPLVDAAMRQLAYSGYMHNRLRMVTASFLV 348 Query: 363 KDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQG 422 KDLLVDWR GE YF +L+D DLA+NNGGWQWAASTG D+ P+FRIFNP Q ++FDP+G Sbjct: 349 KDLLVDWRWGERYFAEKLIDYDLAANNGGWQWAASTGCDAQPWFRIFNPVTQSQKFDPEG 408 Query: 423 TFIRHWLPELNNVPTQYIHAPHSWLDKND---LSLNYPLPIVDHKKACHHTLNQYYAAKK 479 FIR ++PEL + + IHAP L +YP PIVDH + L + +K Sbjct: 409 KFIRRYVPELAALDNKAIHAPWQAKVLPGGFLLGRDYPRPIVDHAEQRTQALALFGQRQK 468 Query: 480 Q 480 Sbjct: 469 A 469 >gi|331656728|ref|ZP_08357690.1| deoxyribodipyrimidine photo-lyase (DNA photolyase)(Photoreactivating enzyme) [Escherichia coli TA206] gi|331054976|gb|EGI26985.1| deoxyribodipyrimidine photo-lyase (DNA photolyase)(Photoreactivating enzyme) [Escherichia coli TA206] Length = 382 Score = 422 bits (1084), Expect = e-116, Method: Composition-based stats. Identities = 208/385 (54%), Positives = 274/385 (71%), Gaps = 5/385 (1%) Query: 98 CLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKV 157 C + R+T LFYN QYE+NE RD E+ L+ V+C+ FDDSV+LPPG+++ +MYKV Sbjct: 2 CAENRITHLFYNYQYEVNERARDVQAERTLR-NVVCEGFDDSVILPPGAVMTGNHEMYKV 60 Query: 158 YTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDP-MFPIGEQNAL 216 +TPF+ A ++ L + + P +R +G + P+ +YP Q+ D FP+ E+ A+ Sbjct: 61 FTPFKNAWLKRLREGMPECVAAPKVRSSGSIEPAPSITL-NYPRQSFDTAHFPVEEKAAI 119 Query: 217 HILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKS 276 LR+FC+ Y +QRD PA++GTS+LS L+ G LSPRQC +RL E +L Sbjct: 120 AQLRQFCQNGAGEYEQQRDFPAVEGTSRLSASLATGGLSPRQCLHRLLAEQPQVLEGGPG 179 Query: 277 GAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPII 336 WLNELIWREFYRHLM +YPS+C +PFI WT++++W + L+AW++G TG+PI+ Sbjct: 180 SV--WLNELIWREFYRHLMTYYPSLCKHRPFIAWTDRVQWQSNPAHLKAWQEGKTGYPIV 237 Query: 337 DAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAA 396 DAAMRQLN+ GWMHNRLRMITASFLVKDLL+DWR GE YFMSQL+DGDLA+NNGGWQWAA Sbjct: 238 DAAMRQLNSTGWMHNRLRMITASFLVKDLLIDWREGERYFMSQLIDGDLAANNGGWQWAA 297 Query: 397 STGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNY 456 STG D+ PYFRIFNPT QG++FD +G FIR WLPEL +VP + +H P W K ++L+Y Sbjct: 298 STGTDAAPYFRIFNPTTQGEKFDREGEFIRQWLPELRDVPGKVVHEPWKWAQKAGMTLDY 357 Query: 457 PLPIVDHKKACHHTLNQYYAAKKQS 481 P PIVDHK+A TL Y A+K + Sbjct: 358 PQPIVDHKEARLRTLAAYEEARKGA 382 >gi|88705106|ref|ZP_01102818.1| Deoxyribodipyrimidine photo-lyase [Congregibacter litoralis KT71] gi|88700801|gb|EAQ97908.1| Deoxyribodipyrimidine photo-lyase [Congregibacter litoralis KT71] Length = 482 Score = 422 bits (1084), Expect = e-116, Method: Composition-based stats. Identities = 152/482 (31%), Positives = 244/482 (50%), Gaps = 16/482 (3%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 ++W R DLR+ D AL AA + +V+ ++I + + +++ SL + Sbjct: 4 TVILWFRQDLRLNDLPALQAASRDG-RRVLPLYIFDEDSPGDWVMGGASRWWLHHSLSAL 62 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL- 127 + + +G + + + E L C T ++ +R+YE +K+L + L Sbjct: 63 ARDIEDQGGKLIFRRGKSR----EVLGDICKSTDATAVYCSRRYEPWASEEEKMLHEDLG 118 Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQ--NLVQADLRSLPVPAIRLT 185 + K + ++L PG+++ + YKV+TPF +A ++ + + + Sbjct: 119 NSDIDFKRYGGTLLHEPGNVMTQSGGPYKVFTPFWRACLELDRAEPVPVPDVTWSTFTKS 178 Query: 186 GPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245 + + + + + GE A L F +E V Y ++RD PA + +S+L Sbjct: 179 DALDDWQLRPTSPNWAASWEEYWTPGEDGAQQRLHDFLEESVSRYADERDFPAEEVSSRL 238 Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305 SP+L G LSPRQ W +++ ++ K+ + E+ WREF HL+ F+P + K Sbjct: 239 SPHLHHGELSPRQVWAMCEQKKLETPASEKA-IKKFQAEIGWREFSYHLLHFFPEIPE-K 296 Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365 F W D L+ W+QG TG+PI+DA MR+L G MHNR+RM+ ASFL K L Sbjct: 297 AFKENFADFPWQPDKTRLERWQQGQTGYPIVDAGMRELWATGTMHNRIRMVVASFLCKHL 356 Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425 L WR GE++F L+D D+ASN WQW A +G D+ PYFRIFNP QG++FD G ++ Sbjct: 357 LQHWRSGEDWFWDTLVDADMASNGCSWQWVAGSGADAAPYFRIFNPITQGEKFDKHGDYV 416 Query: 426 RHWLPELNNVPTQYIHAPHSWLDKN------DLSLNYPLPIVDHKKACHHTLNQYYAAKK 479 R W+PE+ +P +Y+H P + L +YP PIVDHK+A L+ Y K Sbjct: 417 RQWVPEIARLPNKYLHKPWEASKEALEEAGIKLGSDYPEPIVDHKEARQAALDAYEDIKG 476 Query: 480 QS 481 + Sbjct: 477 SN 478 >gi|327193153|gb|EGE60063.1| deoxyribodipyrimidine photo-lyase protein [Rhizobium etli CNPAF512] Length = 482 Score = 421 bits (1083), Expect = e-115, Method: Composition-based stats. Identities = 178/490 (36%), Positives = 262/490 (53%), Gaps = 20/490 (4%) Query: 3 ATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIY 62 A A ++W R DLR+ DNKAL AA H S +I+++I PE + A Q+ +++ Sbjct: 2 AKDAAKPVILWFRKDLRLDDNKALNAA-HFSGRPIISLYIREPEAAGTGPLGAAQAWWLH 60 Query: 63 ASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKL 122 SL + SL ++ + +++E L S Q +F+NR+Y+ + D Sbjct: 61 HSLEALDGSLRKR----RGGLSLASGEALEVLRSLIKQSDADAVFWNRRYDPPGISIDAR 116 Query: 123 LEKRLQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLV--QADLRSLPV 179 +E L+ R I KSF +L P ++ + Y+VYTPF +AL ++ D+ S Sbjct: 117 IEHELEKRAIEVKSFGGQLLHEPSQLMTGSGTPYRVYTPFWRALESSIEAEPLDIPSKLQ 176 Query: 180 PAIRLTGPVTPSNIPRFFDYPFQAID--PMFPIGEQNALHILRKFCKEKVYYYVEQRDIP 237 A +L G + P A + + GE+ A LR F ++++ Y E RD P Sbjct: 177 LASKLPGSEKLESWKLLSTQPDWASNFADLCTPGEEGAQEKLRTFIEDRLDGYKENRDYP 236 Query: 238 AIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAF 297 A TS LSP+L++G +SP + W+ + + P + + E+ WREF HL+A Sbjct: 237 AKPATSMLSPHLALGEISPARIWDATRGLSKHV---PAADIVHFRKEIAWREFSYHLLAH 293 Query: 298 YPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMIT 357 +P + + + EW + +AW +G TG+PI+DA MRQL GWMHNR+RMI Sbjct: 294 FPRLATAN-WDDRFDGFEWRRAEKDFKAWSRGMTGYPIVDAGMRQLWRYGWMHNRVRMIA 352 Query: 358 ASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKR 417 ASFL+KDL+VDWR GE +F L+D D A+N WQW A +G D+ P+FRIFNP +QG++ Sbjct: 353 ASFLIKDLMVDWRHGEAWFRDTLVDADPANNAASWQWVAGSGADASPFFRIFNPVLQGEK 412 Query: 418 FDPQGTFIRHWLPELNNVPTQYIH----APHSWLDKND--LSLNYPLPIVDHKKACHHTL 471 FDP G F+R +PEL + +YIH AP S LD D L YP P+VDH A L Sbjct: 413 FDPDGDFVRAHVPELRKLDAKYIHRPFEAPKSVLDAADVILGETYPEPVVDHAGARKRAL 472 Query: 472 NQYYAAKKQS 481 Y A + + Sbjct: 473 AAYNAIRGAA 482 >gi|253997258|ref|YP_003049322.1| Deoxyribodipyrimidine photo-lyase [Methylotenera mobilis JLW8] gi|253983937|gb|ACT48795.1| Deoxyribodipyrimidine photo-lyase [Methylotenera mobilis JLW8] Length = 473 Score = 421 bits (1083), Expect = e-115, Method: Composition-based stats. Identities = 172/480 (35%), Positives = 248/480 (51%), Gaps = 25/480 (5%) Query: 8 SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQ-HGISARQSHFIYASLL 66 S LVW R DLR D+ ALY A S +V VF+ + Q + R+ FI+ S+ Sbjct: 4 STSLVWFRRDLRDYDHAALYYALKASQ-QVYCVFVFDTDILNQLSDKADRRVEFIWESVQ 62 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 +++ +L Q+G S + + + +F N YE + + RD + ++ Sbjct: 63 ELKTALQQRGSDLIVLHGS----AQHEVPQLAQTLQAQAVFANHDYEPSAIARDAQVAQQ 118 Query: 127 LQ-HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPA-IRL 184 LQ H + + D + +L A + Y V+TP++ A ++ + L++ PV + Sbjct: 119 LQAHDIDFHHYKDQAIFEKDEVLTMAHKPYSVFTPYKNAWLKTVNDFYLKAYPVEHYLNK 178 Query: 185 TGPVTPSNIPRFFDYPFQA---IDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQG 241 + P + + FQ P G + + F E++ +Y E RD PA++G Sbjct: 179 LAKIQPQPLASLESFGFQRTNLSSLRLPTGMSGSATLFDDFI-ERIKHYKEARDFPAVKG 237 Query: 242 TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSV 301 S LS +L G +S RQ + GA +WL+ELIWR+FY ++ P + Sbjct: 238 VSYLSVHLRFGTISIRQLARTAMQI-------GGFGAETWLSELIWRDFYFQILHHNPQL 290 Query: 302 CMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFL 361 GK F E I + + L AW +G TG+P++DAAMRQLNT G+MHNRLRM+ ASFL Sbjct: 291 EAGKAFKTEFEAIAFPNSATLFTAWCEGKTGYPLVDAAMRQLNTTGFMHNRLRMVAASFL 350 Query: 362 VKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQ 421 VKDLL+DWR GE YF L+D D ++NNGGWQWAASTG D+ P+FRIFNP Q +RFD Sbjct: 351 VKDLLIDWRWGERYFAENLIDFDFSANNGGWQWAASTGCDAQPWFRIFNPITQSERFDGH 410 Query: 422 GTFIRHWLPELNNVPTQYIHAPHSWLDKND------LSLNYPLPIVDHKKACHHTLNQYY 475 G FIR ++ EL + IHAP + + NYP PIVDH L+ Y Sbjct: 411 GKFIRKYVAELAQCNDKEIHAPWLMSAQRQSSINTVIGQNYPKPIVDHATQRERVLSLYK 470 >gi|254471109|ref|ZP_05084512.1| deoxyribodipyrimidine photo-lyase [Pseudovibrio sp. JE062] gi|211960251|gb|EEA95448.1| deoxyribodipyrimidine photo-lyase [Pseudovibrio sp. JE062] Length = 471 Score = 421 bits (1083), Expect = e-115, Method: Composition-based stats. Identities = 167/486 (34%), Positives = 249/486 (51%), Gaps = 29/486 (5%) Query: 6 AMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASL 65 + S+ + W R DLR++DN AL AAC + VI ++I +++ +++Y SL Sbjct: 2 SASIVIHWFRQDLRLSDNPALSAACEAGE--VIPLYILNDKEYGAREFGGATKNWLYYSL 59 Query: 66 LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125 + +SL + ++ + D ++S + +F+NR YE V D L+ Sbjct: 60 KALNESLKGQLLIRR-------GDPAVIINSLIQETGAAGVFWNRCYEPWRVEHDAQLKT 112 Query: 126 RLQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPF-RKALIQNLVQADLRSLP----V 179 L+ I KSF+ S+L P + YKV+TPF RK +Q +P + Sbjct: 113 DLEENGITAKSFNGSLLWEPWQVGKPDGSPYKVFTPFYRKGCLQAEEPRKPLPVPDQLRI 172 Query: 180 PAIRLTGPVTPSNIPRFFDYPFQA-IDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPA 238 + G ++ + D P+ A + + GE+ A + L F ++ + Y + R+ PA Sbjct: 173 HPLNTEGALSIDELNLLEDRPWSAQVSSHWEHGEKAAQNRLYAFFEDGLSDYKDGRNFPA 232 Query: 239 IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFY 298 + TS+LSP+L G +SP Q W L + + +EL WREF L+ Sbjct: 233 LTHTSRLSPHLHFGEISPNQIWWVLGSH------EETRDIDHFRSELGWREFSYSLLFNN 286 Query: 299 PSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITA 358 PS+ + W D L AW++G TG PI+DA MR+L G+MHNRLRMI Sbjct: 287 PSLPKSN-LNEKFDNFPWLSDDQRLLAWQKGQTGVPIVDAGMRELWQTGYMHNRLRMIVG 345 Query: 359 SFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRF 418 SFLVK+LL+DWR+GEE+F L+D DLA+N+ WQW A G D+ PYFRIFNP +QG++F Sbjct: 346 SFLVKNLLLDWRLGEEWFWDCLVDADLANNSASWQWIAGCGADAAPYFRIFNPILQGEKF 405 Query: 419 DPQGTFIRHWLPELNNVPTQYIHAPHSWL------DKNDLSLNYPLPIVDHKKACHHTLN 472 D G + R +LPEL ++P +Y+ P L NYPLPIVD KK+ L Sbjct: 406 DAHGDYTRRFLPELKDLPDKYLFKPWEAPKDVLKGAGVTLGENYPLPIVDLKKSRDEALR 465 Query: 473 QYYAAK 478 + K Sbjct: 466 AFEEIK 471 >gi|239994036|ref|ZP_04714560.1| DNA photolyase [Alteromonas macleodii ATCC 27126] Length = 467 Score = 421 bits (1083), Expect = e-115, Method: Composition-based stats. Identities = 162/480 (33%), Positives = 241/480 (50%), Gaps = 25/480 (5%) Query: 12 VWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQKS 71 +W R DLR+ DN AL AAC K++ ++I +++ SL + K Sbjct: 1 MWFRQDLRVKDNPALNAACDMG--KIVPIYIYDDTAPNGREPGGASKWWLHHSLSSLNKR 58 Query: 72 LSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL-QHR 130 L+ +F+ D + +F+NR YE ++ RDK ++K L +H Sbjct: 59 LNGHLQIFK-------GDPQTLIPKLMKSFNAKGIFWNRCYEPWQINRDKTIKKTLIEHE 111 Query: 131 VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTP 190 S + S+L P +L Y+V+TP+ K + + P I Sbjct: 112 YEAHSCNGSLLWEPMKVLKKDGTPYRVFTPYYKKGCLQVEEPRYPKAPPARITYADVDND 171 Query: 191 SNIPRFFDY-----PFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245 S+ D I+ + GE A L F + Y + RDIP+ GTS+L Sbjct: 172 SDGLTSLDLLPSINWDATIEKEWSPGEDGAADNLADFIENSARKYKDGRDIPSANGTSRL 231 Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305 SP+L G +SP Q W +K++F + K ++L+EL WREF +L+ +P++ K Sbjct: 232 SPHLHFGEVSPNQVWYAIKDKFGNSEDK---SIETYLSELGWREFSYYLLFHFPTLP-NK 287 Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365 F +K W D+ L+AW++G TG PI+DA MR+L G+MHNR+RMI SFLVK+L Sbjct: 288 NFNEKFDKFPWRTDAKALKAWQKGNTGIPIVDAGMRELWQTGYMHNRVRMIVGSFLVKNL 347 Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425 L+ W GE +F LLD DLASN+ WQW A +G D+ PYFRIFNP +QG++FD +G ++ Sbjct: 348 LLSWHEGERWFWDTLLDADLASNSASWQWVAGSGADAAPYFRIFNPILQGEKFDKKGNYV 407 Query: 426 RHWLPELNNVPTQYIHAPHSWLDK------NDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479 R + PEL + +YIH P +L YP PIVD K + L+ + K+ Sbjct: 408 RKYCPELKKLSDKYIHKPWEAPSAILKDAGIELGKEYPKPIVDLKASRQRALDAFQTLKE 467 >gi|270159915|ref|ZP_06188571.1| deoxyribodipyrimidine photo-lyase [Legionella longbeachae D-4968] gi|289165333|ref|YP_003455471.1| deoxyribodipyrimidine photolyase phrB [Legionella longbeachae NSW150] gi|269988254|gb|EEZ94509.1| deoxyribodipyrimidine photo-lyase [Legionella longbeachae D-4968] gi|288858506|emb|CBJ12387.1| putative deoxyribodipyrimidine photolyase phrB [Legionella longbeachae NSW150] Length = 472 Score = 421 bits (1082), Expect = e-115, Method: Composition-based stats. Identities = 166/481 (34%), Positives = 253/481 (52%), Gaps = 15/481 (3%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M+ LVW R DLR+ DN A AC + VI ++I + + Q+ ++Y SL Sbjct: 1 MTTALVWFRFDLRLNDNPAFIEACSHHQ-FVIPLYIYD---EKNSVLGGAQAWWLYHSLT 56 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 + SL+Q+G+ + D +E + ++ +++NR YE + RDK ++ Sbjct: 57 SLSNSLAQRGLNLILRKG----DPLEIILDLAKTVSISSVYWNRCYEPVAISRDKGIKAT 112 Query: 127 LQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185 L R I S + S+L P +I N + +KV+TP+ K Q + +L + + Sbjct: 113 LLERGIDVHSSNGSLLHEPWTIRNKSGDYFKVFTPYWKHCKQLINIQRPMNLEHRPVGVE 172 Query: 186 GPVTPSNIPRFFDYPFQA--IDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS 243 N + A + GE A L++F + + Y RD P TS Sbjct: 173 VQSELLNDWKLLPTINWAARFSEYWIPGEGGAQQKLKEFIEHHLNGYKNNRDFPIKNATS 232 Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCM 303 +LSP+L G +SP ++ ++ + A +L+EL WREF +L+ +P + Sbjct: 233 RLSPHLHFGEISPWTILRAIELAKLNPNC-DLASAEHFLSELGWREFSVYLLYHFPKLP- 290 Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363 + F + W+ D LL W++G TG+PIIDA MR+L G+MHNR+RMI ASFL K Sbjct: 291 SENFRNEFDAFPWHNDEKLLSYWRRGLTGYPIIDAGMRELWATGYMHNRVRMIAASFLTK 350 Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423 LL+DWR+G ++F+ L+D DLA+N+ WQW A G D+ PYFRIFNP +Q ++FD G+ Sbjct: 351 GLLIDWRLGADWFLDTLVDADLANNSASWQWVAGCGADAAPYFRIFNPVLQSQKFDADGS 410 Query: 424 FIRHWLPELNNVPTQYIHAPHSWLDKNDLSLN--YPLPIVDHKKACHHTLNQYYAAKKQS 481 +IRHW+PEL+ + +Q IHAP + LN YP PI+DH +A LN Y K+ Sbjct: 411 YIRHWVPELSQLDSQSIHAPWESVGSERFYLNTKYPKPIIDHHEARTRALNYYNQLKRND 470 Query: 482 L 482 L Sbjct: 471 L 471 >gi|254489691|ref|ZP_05102887.1| deoxyribodipyrimidine photolyase family [Methylophaga thiooxidans DMS010] gi|224465100|gb|EEF81353.1| deoxyribodipyrimidine photolyase family [Methylophaga thiooxydans DMS010] Length = 464 Score = 421 bits (1082), Expect = e-115, Method: Composition-based stats. Identities = 193/472 (40%), Positives = 274/472 (58%), Gaps = 12/472 (2%) Query: 8 SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67 LVWLRNDLR+ DN A+ A D + VFIATP+QW+QH SA + AS+ Sbjct: 3 PTQLVWLRNDLRLDDNPAISQAQQQGDLHL--VFIATPKQWQQHDESAAKQGLKAASIED 60 Query: 68 VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127 + + L++ G+ F + F D + L ++C Q+ + +++N++ ++E RRD + L Sbjct: 61 INQQLAKLGVPFTILETDWFADIPKLLKTFCQQKNIRDIWFNQETPLDERRRDDAVIDVL 120 Query: 128 QH-RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 + V C + D +++ +L + +KV+TP+ + +Q L + PVP + Sbjct: 121 EGFGVNCHALDADLIVTV-PVLTQQNEPFKVFTPYYRRWLQILQETQKPPYPVPDKQGEA 179 Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246 P + D D ++P E + L L +FC+ KV Y + RDIPA GTS LS Sbjct: 180 IAVDLLKPGWSD---DYRDDLWPADEASVLKKLSQFCRNKVKAYPKYRDIPAESGTSTLS 236 Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP 306 PYLSIG + PR+ ++ + + + WL EL WR+FYR L+ +P + M KP Sbjct: 237 PYLSIGRIGPRRLLASIQYHCSEQGLHWQDN--DWLRELAWRDFYRQLLLHFPRLSMEKP 294 Query: 307 FIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLL 366 F P T+ + W D AW +G TGFPI+DAAMRQL GWMHNRLRMITASFL K LL Sbjct: 295 FKPETDNVVWRDDETGFHAWCEGKTGFPIVDAAMRQLQQTGWMHNRLRMITASFLTKLLL 354 Query: 367 VDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIR 426 +DWR GE++FM LLDG+ A+NNGGWQW+ASTG D+ PYFR+FNPT Q +RFDP G FIR Sbjct: 355 IDWRRGEQFFMQHLLDGEFAANNGGWQWSASTGVDAAPYFRVFNPTRQSERFDPDGEFIR 414 Query: 427 HWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478 ++PEL + + IH P L YP+PI+D+K A ++ + K Sbjct: 415 RFVPELKKLSGKQIHNPSDQLRTE---TGYPMPIIDYKPARQTAIDAFADLK 463 >gi|242786746|ref|XP_002480866.1| deoxyribodipyrimidine photo-lyase Phr1, putative [Talaromyces stipitatus ATCC 10500] gi|218721013|gb|EED20432.1| deoxyribodipyrimidine photo-lyase Phr1, putative [Talaromyces stipitatus ATCC 10500] Length = 593 Score = 421 bits (1082), Expect = e-115, Method: Composition-based stats. Identities = 172/487 (35%), Positives = 259/487 (53%), Gaps = 21/487 (4%) Query: 11 LVWLRNDLRITDNKALYAA---CHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67 + W + DLR+ DN+AL A ++ ++ ++I +P+ H S + F +L Sbjct: 100 VHWFKGDLRLNDNRALKMASELAAKNEIPLVCMYIMSPQDLTAHCSSPARVDFTLRNLRV 159 Query: 68 VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127 +Q+ L I + E + C Q + LF N +YE++E+RR+ L + L Sbjct: 160 LQRELGTLDIPLYIETQERRRNIPERIGELCEQWGASHLFANIEYEVDELRREAKLVRLL 219 Query: 128 QHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQA---------DLRSL 177 + I ++ DS ++ PG++ + + Y VY+P+ +A + L Q Sbjct: 220 ADKGIAFETAHDSCVVTPGALQSQQGKQYAVYSPWYRAWMGYLHQHGDHNLRVLEPPGKN 279 Query: 178 PVPAIRLTGPVTPSNIP------RFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYV 231 A G + S IP R D Q + M+P GEQ A L +F +V Y Sbjct: 280 HESARSHFGDLFDSQIPGASENRRLSDEEKQRFEKMYPEGEQEARKRLDEFITTRVKEYS 339 Query: 232 EQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFY 291 ++R + Q T+ LSPYL+ GVLS R ++ K+ L + SW++E+ WR+FY Sbjct: 340 KKRSMVDGQYTAILSPYLASGVLSARTAVSKAKDANGGYLDGKNASLASWISEVAWRDFY 399 Query: 292 RHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHN 351 +H++ +P +CM K F P + W D+ L W +G TG+PI+DAAMRQL W+HN Sbjct: 400 KHVLVHWPFICMNKCFKPEFTNVTWEYDTDLFTRWTEGQTGYPIVDAAMRQLRHDAWLHN 459 Query: 352 RLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNP 411 R RMI +SFL KDL++DWR GE YFM L+DGD ASN+GGW + +STG D PYFRIFNP Sbjct: 460 RNRMIVSSFLSKDLMIDWRRGERYFMETLIDGDFASNHGGWGFGSSTGVDPQPYFRIFNP 519 Query: 412 TIQGKRFDPQGTFIRHWLPELNNV-PTQYIHAPHSWLDKNDLSL-NYPLPIVDHKKACHH 469 +Q ++FDP G FIR W+PEL+++ ++ IH P+ YP PIV+H + Sbjct: 520 LLQSEKFDPNGDFIRKWVPELSDIKDSKAIHDPYGRGAGAIAQKAGYPRPIVEHAASRVR 579 Query: 470 TLNQYYA 476 L +Y Sbjct: 580 ALKRYKE 586 >gi|326315673|ref|YP_004233345.1| Deoxyribodipyrimidine photo-lyase [Acidovorax avenae subsp. avenae ATCC 19860] gi|323372509|gb|ADX44778.1| Deoxyribodipyrimidine photo-lyase [Acidovorax avenae subsp. avenae ATCC 19860] Length = 495 Score = 421 bits (1082), Expect = e-115, Method: Composition-based stats. Identities = 178/498 (35%), Positives = 251/498 (50%), Gaps = 23/498 (4%) Query: 1 MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHF 60 M S LVW R DLR D+ ALY A +V VF+ + + R+ F Sbjct: 1 MIMVPTFSKGLVWFRRDLRSDDHAALYHALRQC-GQVHCVFVFDTDILDPLPRADRRVEF 59 Query: 61 IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120 I SL+Q+ SL + E + + ++ V LF N E + RD Sbjct: 60 IRESLVQLDASLRDLSGHRHGGLIVRHGVAAEEVPALAVRLGVQALFANHDDEPAALERD 119 Query: 121 KLLEKRLQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPV 179 + RL + ++ D + +L Y V+TP++ A ++ + L + PV Sbjct: 120 DRVRHRLGAGGVQMLTYKDHTVFERAEVLTQGGTPYTVFTPYKNAWLRKVDAFYLSAYPV 179 Query: 180 PAIRLTGPVTPS----NIPRFFDYPFQAIDPM---FPIGEQNALHILRKFCKEKVYYYVE 232 P ++P D F+ P G + A +L F + ++ Y E Sbjct: 180 ERHAGRLAPRPEGARGSVPALADIGFEPAGLDRLPLPPGMEGARTLLDDFLQ-RIDQYGE 238 Query: 233 QRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYR 292 RD PA++G S LS +L G LSPR+ E +GA +WL+ELIWR+FY Sbjct: 239 ARDFPAVKGPSYLSVHLRFGTLSPRRAARAAHERMRQ----GSTGAATWLSELIWRDFYF 294 Query: 293 HLMAFYPSVCMGKPFIPWTEKIEWNKDS---HLLQAWKQGYTGFPIIDAAMRQLNTIGWM 349 ++A +P V G F P + I W AW +G TG+P++DAAM Q+N G+M Sbjct: 295 QVLAHHPQVAGGASFKPAYDAIPWEDGPQAQERFAAWCEGRTGYPLVDAAMAQINQTGYM 354 Query: 350 HNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIF 409 HNRLRM+ ASFLVKDL VDWR GE YF +L D DL++NNGGWQWA+S+G D+ PYFRIF Sbjct: 355 HNRLRMVVASFLVKDLGVDWRRGERYFAEKLNDFDLSANNGGWQWASSSGCDAQPYFRIF 414 Query: 410 NPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSW------LDKNDLSLNYPLPIVDH 463 NP Q ++FDP+G FIR +LP+L +P +++HAP L NYP PIVDH Sbjct: 415 NPVSQSRKFDPKGRFIRLYLPQLAALPDRWLHAPWEAGPLELEAAGVRLGDNYPHPIVDH 474 Query: 464 KKACHHTLNQYYAAKKQS 481 +A TL +Y K ++ Sbjct: 475 DEARQKTLARYAVVKSEA 492 >gi|332711249|ref|ZP_08431182.1| deoxyribodipyrimidine photo-lyase type I [Lyngbya majuscula 3L] gi|332350063|gb|EGJ29670.1| deoxyribodipyrimidine photo-lyase type I [Lyngbya majuscula 3L] Length = 474 Score = 421 bits (1082), Expect = e-115, Method: Composition-based stats. Identities = 167/477 (35%), Positives = 240/477 (50%), Gaps = 17/477 (3%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 L W R DLRI+DN L AA S K++ VF P + I+ + ++ L Q+Q+ Sbjct: 6 LFWHRRDLRISDNVGLAAAFELS-PKLVGVFCLDPTILERDDIAPARVTYMIGCLEQLQQ 64 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130 Q G + + + + +N E RD+ + L+ + Sbjct: 65 GYRQAGSQLLILHQDPR----QGIPNLAAALEAKAVCWNWDVEPYSKERDQDVAAGLKEK 120 Query: 131 VI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADL------RSLPVPAIR 183 I ++ D +L PG I + Y VYTPF K + SL Sbjct: 121 GIAVYNYWDQLLHAPGEIFTKSGNPYSVYTPFWKNWQGQSKAEPVATLTRVESLTEIEQD 180 Query: 184 LTGPVTPSNIPRFFDYPFQAIDPMF-PIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGT 242 +++P D + + + P GE+ A IL +FC + Y EQR+ P + GT Sbjct: 181 NALAAGVTDLPSAIDLGYVWENELLVPPGEKVAQEILEEFCDRTIGDYHEQRNFPGVDGT 240 Query: 243 SQLSPYLSIGVLSPRQCWNRLKEEFV-DLLIKPKSGAFSWLNELIWREFYRHLMAFYPSV 301 S+LS L GV+ R+ W + + + + +W EL WREFY+H M F+P + Sbjct: 241 SKLSAALKFGVIGIRRVWQAAQNAYNLSRSDEARQSIQTWQQELAWREFYQHAMYFFPEL 300 Query: 302 CMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFL 361 G P+ + W+ + QAW +G TG+PI+DAAMRQLN GWMHNR RMI ASFL Sbjct: 301 AQG-PYRQKFQDFPWDNNPEFFQAWCEGKTGYPIVDAAMRQLNQTGWMHNRCRMIVASFL 359 Query: 362 VKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQ 421 KDL+++W+ GE+YFM +L DGDL++NNGGWQW+AS+G D P RIFNP Q K+FDP Sbjct: 360 TKDLIINWQWGEKYFMQRLSDGDLSANNGGWQWSASSGMDPKP-LRIFNPASQAKKFDPD 418 Query: 422 GTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478 G +IR WLPEL++V T+Y+ + + YP PIVDH + Y + Sbjct: 419 GEYIREWLPELSSVDTEYVVS-GKIPESGREMCGYPAPIVDHNQQQRRFKELYKELQ 474 >gi|294649780|ref|ZP_06727183.1| deoxyribodipyrimidine photo-lyase [Acinetobacter haemolyticus ATCC 19194] gi|292824331|gb|EFF83131.1| deoxyribodipyrimidine photo-lyase [Acinetobacter haemolyticus ATCC 19194] Length = 476 Score = 420 bits (1081), Expect = e-115, Method: Composition-based stats. Identities = 188/477 (39%), Positives = 269/477 (56%), Gaps = 16/477 (3%) Query: 10 HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69 L+W R DLRI D+ AL+ A +A+ I +PEQW+ H + + F L Q+Q Sbjct: 6 QLIWFRQDLRIHDHAALWHATQTGRT--VALVILSPEQWQLHDDAPIKIDFYLRQLQQLQ 63 Query: 70 KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL-Q 128 +L I + D + + +++ N + +NE++RD ++K L Q Sbjct: 64 IALQSLNIPLIVQHLPLWKDITQLFADLMQNIPIQQVYANIELGVNELKRDNEVQKLLNQ 123 Query: 129 HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188 F D L P SI N + Q Y+V++ F+K Q L Q+ + PVP ++ P+ Sbjct: 124 QNKELVLFHDRTLFPVASIRNQSHQPYQVFSAFKKVCYQRLQQSLPQCYPVPDVQQ--PI 181 Query: 189 TPSNIPRFFDYP---------FQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAI 239 P D+ + +P+ E AL +L +F +++ Y RD PA Sbjct: 182 NIDPYPSLEDFKELQLKYTQQLNHLTQQWPVSESFALTLLDQFIHDRLDDYKNARDFPAQ 241 Query: 240 QGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYP 299 GTSQ+S YL+IG+LS RQC L + + G +WL+EL+WREFY+H++ YP Sbjct: 242 AGTSQVSAYLNIGILSIRQCLQALFHKQHGDFLIESEGQQTWLDELLWREFYQHILFDYP 301 Query: 300 SVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITAS 359 V PF T+KI W D LQ W+QG+TG PI+DA MRQL GWMHNR+RMI A Sbjct: 302 RVSKHLPFQLSTQKIHWRDDPVALQQWQQGHTGIPIVDAGMRQLLATGWMHNRVRMICAM 361 Query: 360 FLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFD 419 FL K+LL+DWR GE++FM L+DGDLA+NNGGWQW ASTG D+ PYFRIFNP Q ++FD Sbjct: 362 FLSKNLLIDWRKGEQWFMQHLIDGDLAANNGGWQWCASTGTDAAPYFRIFNPISQSQKFD 421 Query: 420 PQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYA 476 P G ++R W+PEL ++ + IH P+++ K + SLNYP+PIVD K + + + Sbjct: 422 PNGDYLRQWIPELAHLDAKSIHEPYAY--KMNSSLNYPIPIVDLKSSRARAIAAFKE 476 >gi|228921829|ref|ZP_04085144.1| Deoxyribodipyrimidine photolyase [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228837834|gb|EEM83160.1| Deoxyribodipyrimidine photolyase [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] Length = 476 Score = 420 bits (1080), Expect = e-115, Method: Composition-based stats. Identities = 157/480 (32%), Positives = 254/480 (52%), Gaps = 22/480 (4%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 +V + D R+ DN AL+ A + + V+ ++I I + +++ +++ ++K Sbjct: 6 IVMFQKDFRLYDNPALFEAVQSGE--VLPIYIQD----ETFSIGSAAKWWLHHAIIDIKK 59 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH- 129 L G + + E + S Q +T +++N Y+ + ++ ++ ++ L+ Sbjct: 60 QLEALGSTLIIRKGNT----QEEILSLIKQLDITAVYWNSCYDPDRLKSNQKMKMILEDK 115 Query: 130 RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAI--RLTGP 187 +ICK F+ +LL P I YKV+TPF A + ++ + L Sbjct: 116 GIICKEFNSHLLLEPWIIKKKDNTEYKVFTPFYNAFQKQVIPKPTSKVQSIKWGSSLPAS 175 Query: 188 VTPSNIPRFFDYPFQA-IDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246 ++ S + P+ + ++ ++ E+ A + +KF K+ +Y E RD P S L+ Sbjct: 176 LSVSELHLLPTIPWTSHMEAIWDPTEEGAYKVFKKFFSSKLAFYSEGRDFPNQNAHSMLA 235 Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKP-KSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305 PYLS G + + ++ L + + + S++ +LIWREF +L+ YP + K Sbjct: 236 PYLSFGQIPVKLMYHYLINKSTERQCSLFEKQVISFIRQLIWREFSYYLLYHYP-FTVYK 294 Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365 P E WNK+ LL+ W++G TG+P IDA MR+L G+MHNR RM ASFLVK L Sbjct: 295 PLNKNFEHFPWNKEEELLRVWQKGETGYPFIDAGMRELWQTGFMHNRARMAVASFLVKHL 354 Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425 L+ W+ G ++FM LLD D+A+N GWQW A +G D+ PYFRIFNP QG++FD G +I Sbjct: 355 LISWQEGAKWFMDTLLDADIANNTMGWQWVAGSGADASPYFRIFNPITQGEKFDKNGEYI 414 Query: 426 RHWLPELNNVPTQYIHAPHS----WLDKNDLSLN--YPLPIVDHKKACHHTLNQYYAAKK 479 R W+PEL ++P +YIH P L K ++ L YPLP+VDHK A L Y + K+ Sbjct: 415 RKWVPELRDIPNKYIHKPWEAPEHILQKANIKLGHTYPLPVVDHKAARERALCAYKSMKE 474 >gi|113474888|ref|YP_720949.1| deoxyribodipyrimidine photo-lyase type I [Trichodesmium erythraeum IMS101] gi|110165936|gb|ABG50476.1| Deoxyribodipyrimidine photo-lyase type I [Trichodesmium erythraeum IMS101] Length = 474 Score = 420 bits (1080), Expect = e-115, Method: Composition-based stats. Identities = 164/476 (34%), Positives = 239/476 (50%), Gaps = 16/476 (3%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 L W R DLRI+DN L A V+ +F ++ I++ + ++ L +QK Sbjct: 6 LFWHRRDLRISDNVGLTQASQEGQT-VVGIFCLDENILKRDDIASARVTYMIGCLQHLQK 64 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH- 129 Q G IE + +++N E +RD+ +++ L+ Sbjct: 65 RYKQIGSQLLIMSGKP----IEAIPKLATFLEAKAVYWNLDVEPYSRKRDRQVKENLEAA 120 Query: 130 RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADL-----RSLPVPAIRL 184 + K+F + +L P I + Y VYTPF K L + L ++ Sbjct: 121 NIQVKTFWEQLLHSPEEIFTSTKKPYSVYTPFWKNWQGKKKSNPLNTPVLKGLTEDQLQY 180 Query: 185 TGPVTPSNIPRFFDYPFQAIDPM-FPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS 243 T + ++P F + + GE AL L KF + Y EQR+ P++ GTS Sbjct: 181 TKKIGVIDLPTAKQLGFNWDNKLILEPGETAALEKLEKFSNGAISSYQEQRNFPSLDGTS 240 Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKP-KSGAFSWLNELIWREFYRHLMAFYPSVC 302 QLS L G + R W + +E + +W E+ WREFY+++M YP + Sbjct: 241 QLSVALKFGTIGIRTVWAKTQELIENCYSSEVFENIETWQKEIAWREFYQYVMYHYPELE 300 Query: 303 MGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLV 362 G P+ + W + QAW +G TG+PI+DAAMRQLN GWMHNR RMI ASFL Sbjct: 301 TG-PYREHWKNFPWKNNKAHFQAWCEGNTGYPIVDAAMRQLNETGWMHNRCRMIVASFLT 359 Query: 363 KDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQG 422 KDL+++W+ GE+YFM L+DGDL +NNGGWQW+AS+G D P RIFNP Q +++DP+G Sbjct: 360 KDLIINWQWGEKYFMQNLIDGDLCANNGGWQWSASSGMDPKP-LRIFNPVSQTQKYDPEG 418 Query: 423 TFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478 +IR W+ EL +V TQY+ + ++ YPLPIVDHKK + Y K Sbjct: 419 EYIRQWVCELRSVDTQYLVT-GKIPAEEREAIGYPLPIVDHKKQQQLFKDLYREQK 473 >gi|118590290|ref|ZP_01547693.1| DNA photolyase [Stappia aggregata IAM 12614] gi|118437262|gb|EAV43900.1| DNA photolyase [Stappia aggregata IAM 12614] Length = 478 Score = 420 bits (1079), Expect = e-115, Method: Composition-based stats. Identities = 168/488 (34%), Positives = 247/488 (50%), Gaps = 30/488 (6%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQ--WRQHGISARQSHFIYASLL 66 LVW R DLRI DN AL+ A + +V+ VFI P H + +++ SL Sbjct: 2 TTLVWFRQDLRIKDNPALFEAAKSG--RVLPVFILEPADKTGETHPLGGASRWWLHHSLK 59 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 +Q+ L G+V D+ + + V +F+NR YE + RD L+ Sbjct: 60 ALQQDLP--GLVLL------KGDARHLIPEVAKRAGVEAVFWNRCYEPYAIERDTDLKSS 111 Query: 127 LQHRV-ICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185 L+ KSF S+L P I + YKVY+PF KA Q + +LP P Sbjct: 112 LKDDGYEVKSFKASLLYEPWEIETQSGGPYKVYSPFWKAARQIEIDD---ALPAPEKLDI 168 Query: 186 GPVTPSNIPRFFDY------PFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAI 239 FD + + ++ GE A L F +E + Y + R+ P + Sbjct: 169 ADYDGGEELESFDLLPKKPNWAKGWEDLWTPGEAGASERLGSFLEEGLKGYGKLRNRPDL 228 Query: 240 QGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYP 299 S+LSP+L G +SPRQ W+ ++ D +L+E+ WREF +L+ +P Sbjct: 229 PNVSRLSPHLHFGEISPRQIWHATQDVM-DRRSSLGDDGMKFLSEIAWREFSHNLLYHFP 287 Query: 300 SVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITAS 359 + + + ++ W + L+ W++G TG+PI+DA MR+L G+MHNR+RMI AS Sbjct: 288 KLP-SENWRSTFDEYPWKEPDGELEKWQKGQTGYPIVDAGMRELWQTGYMHNRVRMIAAS 346 Query: 360 FLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFD 419 FL+K L + WR GE +F L+D DLA+N+ GWQW A +G D+ PYFR+FNP QG++FD Sbjct: 347 FLIKHLRLHWRHGEAWFRDTLVDADLANNSAGWQWVAGSGADAAPYFRVFNPITQGEKFD 406 Query: 420 PQGTFIRHWLPELNNVPTQYI----HAPHSWLDKNDLSLN--YPLPIVDHKKACHHTLNQ 473 P G +IR W+PEL + T+Y+ AP L K ++L YP P+VDH A L Sbjct: 407 PDGNYIRQWVPELRELDTRYLFAPFDAPAEALKKARITLGDTYPKPLVDHASAREAALEG 466 Query: 474 YYAAKKQS 481 Y A K+ Sbjct: 467 YEAVKQAG 474 >gi|190891474|ref|YP_001978016.1| deoxyribodipyrimidine photo-lyase [Rhizobium etli CIAT 652] gi|190696753|gb|ACE90838.1| deoxyribodipyrimidine photo-lyase protein [Rhizobium etli CIAT 652] Length = 482 Score = 420 bits (1079), Expect = e-115, Method: Composition-based stats. Identities = 175/490 (35%), Positives = 256/490 (52%), Gaps = 20/490 (4%) Query: 3 ATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIY 62 A A ++W R DLR+ DNKAL AA H S +I+++I PE + A QS +++ Sbjct: 2 ANDAAKPLILWFRKDLRLDDNKALNAA-HFSGRPIISLYIREPEAAGTGPLGAAQSWWLH 60 Query: 63 ASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKL 122 SL + SL ++ L S Q +F+NR+Y+ + D Sbjct: 61 HSLEALDGSLRKRRGGLLLASGEALG----VLRSLIRQSDADAVFWNRRYDPPGISIDAH 116 Query: 123 LEKRL-QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADL--RSLPV 179 +E L + + KSF +L P ++ + Y+VYTPF +AL +++ L S Sbjct: 117 IEHELEKQAIEVKSFGGQLLHEPSQLMTGSGTPYRVYTPFWRALERSIEPEPLDIPSKLQ 176 Query: 180 PAIRLTGPVTPSNIPRFFDYPFQAID--PMFPIGEQNALHILRKFCKEKVYYYVEQRDIP 237 A +L G + P A + ++ GE+ A LR F ++++ Y E RD P Sbjct: 177 LASKLPGSEKLESWKLLSTQPDWASNFADLWTPGEEGAQEKLRTFIEDRLDGYKENRDYP 236 Query: 238 AIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAF 297 A TS LSP+L++G +SP + W+ + L P + + E+ WR+F HL+A Sbjct: 237 AKPATSMLSPHLALGEISPARIWDATRGLSKHL---PAADIVHFRKEIAWRDFSYHLLAH 293 Query: 298 YPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMIT 357 +P + + ++ EW AW +G TG+PI+DA MRQL GWMHNR+RMI Sbjct: 294 FPRLATAN-WDDRFDRFEWGSAEEDFNAWSRGMTGYPIVDAGMRQLWRYGWMHNRVRMIA 352 Query: 358 ASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKR 417 ASFL+KDL+VDWR GE +F L+D D A+N WQW A +G D+ P+FR+FNP +QG++ Sbjct: 353 ASFLIKDLMVDWRHGEAWFRDTLVDADPANNAASWQWVAGSGADASPFFRVFNPVLQGEK 412 Query: 418 FDPQGTFIRHWLPELNNVPTQYIH----APHSWLDKND--LSLNYPLPIVDHKKACHHTL 471 FDP G F+R +PEL + +YIH AP S LD D L YP P+VDH A L Sbjct: 413 FDPDGDFVRSHVPELRKLDAKYIHRPFEAPKSVLDAADVILGETYPEPVVDHAGARKRAL 472 Query: 472 NQYYAAKKQS 481 Y A + + Sbjct: 473 AAYNAIRGAA 482 >gi|16799672|ref|NP_469940.1| hypothetical protein lin0597 [Listeria innocua Clip11262] gi|16413037|emb|CAC95829.1| lin0597 [Listeria innocua Clip11262] Length = 467 Score = 420 bits (1079), Expect = e-115, Method: Composition-based stats. Identities = 179/481 (37%), Positives = 253/481 (52%), Gaps = 27/481 (5%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 ++W R DLR+ DNKALY AC D +I +F PEQ+ + + +AS+ Sbjct: 2 TSVMWFRRDLRVNDNKALYHACKEED--LILLFQVNPEQFIK---GSPSHQAFFASVAHF 56 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQ-RVTKLFYNRQYEINEVRRDKLLEKRL 127 Q+ L++ H F + IE L + K+F+NR RD+ Sbjct: 57 QQELNKN-----THLQIMFGEPIELLKQLKEKIPTWDKVFFNRDETGYGASRDEAARAFF 111 Query: 128 QHR-VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 + + S+ DS L + A + YK++TP+ K + + + L+ P Sbjct: 112 ADKEITVHSYHDSYLHSAEEVKKSATEYYKIFTPYYKKWREEIKEMPLKVTLKPEKIRKE 171 Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246 + P+ +F + P F GE+ A L F KE + Y + RD+PA+ TS LS Sbjct: 172 SLFPNYEEQFRELIQDL--PAFDSGEKAANTRLANFVKEDLADYDKARDVPALDKTSHLS 229 Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP 306 YL G +S R W L++E + G ++ EL WR+FY + +P +P Sbjct: 230 RYLRTGEISIRTVWQALQKE------EATEGRATFEKELCWRDFYNMIYVSFPKQ-KNEP 282 Query: 307 FIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLL 366 IEW + + W+ G TGFP++DAAMRQL GWMHNRLRMITASFL KDLL Sbjct: 283 IQENYRFIEWENNREFFKKWQDGQTGFPLVDAAMRQLKETGWMHNRLRMITASFLTKDLL 342 Query: 367 VDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIR 426 +DWR GE+YF L+D D ASN GGWQWAASTG D+VPYFRIFNPT Q ++FDP GTFIR Sbjct: 343 IDWRFGEKYFQQMLIDYDPASNIGGWQWAASTGTDAVPYFRIFNPTTQSEKFDPDGTFIR 402 Query: 427 HWLPELNNVPTQYIHAPHSWLDKND------LSLNYPLPIVDHKKACHHTLNQYYAAKKQ 480 ++ EL ++P ++IH P + L +YPLPI+DHK+ + +Y +K+ Sbjct: 403 KYVKELRDLPDKFIHQPEKMSETEQKEHGLILGKDYPLPIIDHKERRKLAIARYEFSKEH 462 Query: 481 S 481 S Sbjct: 463 S 463 >gi|295700812|ref|YP_003608705.1| deoxyribodipyrimidine photo-lyase [Burkholderia sp. CCGE1002] gi|295440025|gb|ADG19194.1| Deoxyribodipyrimidine photo-lyase [Burkholderia sp. CCGE1002] Length = 499 Score = 419 bits (1078), Expect = e-115, Method: Composition-based stats. Identities = 183/493 (37%), Positives = 251/493 (50%), Gaps = 37/493 (7%) Query: 10 HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQ-------WRQHGIS----ARQS 58 LVW R DLR TD+ ALY A + + +V VF+ W+ R+ Sbjct: 14 GLVWFRRDLRNTDHAALYYALEHCE-RVWCVFVFDTTILQPIVDAWQTRHPGEPVKDRRI 72 Query: 59 HFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVR 118 FI ASL ++ +L G + D E + + RV +F N YE + Sbjct: 73 DFILASLAELDDALRANGGGLVVL----YGDPAELVPKLAAELRVDAVFANHDYEPVAIE 128 Query: 119 RDKLLEKRLQHRV-ICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSL 177 RD + +RL + +F D + +LN + + V+TP++ A ++ L DL+ Sbjct: 129 RDATVGERLAEKGRQWLTFKDQTIFERDELLNGQDKPFAVFTPYKNAWLKQLSAFDLKPY 188 Query: 178 PVPA-IRLTGPVTPSNIPRFFDY------PFQAIDPMFPIGEQNALHILRKFCKEKVYYY 230 PV + + P R P D P G A +L F ++ Y Sbjct: 189 PVETYAKHLAALPPKLDRRLPTLDQLCFAPSNLTDLPLPAGMSGAQQLLDDFLT-RIDSY 247 Query: 231 VEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREF 290 E+RD PA +G S LS +L G +S R + + L GA +WL+ELIWR+F Sbjct: 248 AERRDFPAAKGPSYLSVHLRFGTVSIRTL---ARLAYEMSLQPDGKGAATWLSELIWRDF 304 Query: 291 YRHLMAFYPSVCMGKPFIPWTEKIEWNKDS---HLLQAWKQGYTGFPIIDAAMRQLNTIG 347 Y ++A +P + G PF P E + W K AW G TG+P++DAAM QLN G Sbjct: 305 YFMVLAHHPRIAKGAPFKPEYEHLRWEKGPSADAAFAAWCDGRTGYPLVDAAMLQLNHTG 364 Query: 348 WMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFR 407 +MHNRLRM+TASFL KDL VDWR+GE YF L D D ++NNGGWQWAASTG D+ PYFR Sbjct: 365 YMHNRLRMVTASFLAKDLGVDWRLGERYFADLLNDFDFSANNGGWQWAASTGCDAQPYFR 424 Query: 408 IFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKN------DLSLNYPLPIV 461 IFNP Q ++FDP G FI+ +LP+L +P ++IHAP + L NYP PIV Sbjct: 425 IFNPVTQSEKFDPDGRFIKRYLPQLAQLPAKWIHAPWLAGAERLAEYGVVLGGNYPEPIV 484 Query: 462 DHKKACHHTLNQY 474 DH +A TL +Y Sbjct: 485 DHAQARERTLIRY 497 >gi|114707205|ref|ZP_01440103.1| DNA photolyase [Fulvimarina pelagi HTCC2506] gi|114537401|gb|EAU40527.1| DNA photolyase [Fulvimarina pelagi HTCC2506] Length = 492 Score = 419 bits (1078), Expect = e-115, Method: Composition-based stats. Identities = 155/488 (31%), Positives = 239/488 (48%), Gaps = 18/488 (3%) Query: 2 KATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFI 61 A +VWLR+DLR+ DN AL A + ++ + + E + ++ Sbjct: 11 TADQETGPIVVWLRDDLRLDDNPALALAAET-NRPIVPLVVLDEESDGVRALGGAHKWWL 69 Query: 62 YASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDK 121 + SL SL KG + D ++ ++ + + LF+NR+Y+ D Sbjct: 70 HHSLESFASSLRGKGSRLTLRRGKAKDQVLDVIE----KTGASALFFNRRYDQASRAVDD 125 Query: 122 LLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSL---- 177 + + L +V + F ++L P ++ + YKV+TPF + + ++ + + Sbjct: 126 AIGEALGDQVSVERFTANLLHDPENVETTSGGYYKVFTPFWRKVSESGPRDPIDPPDGLK 185 Query: 178 -PVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDI 236 P + +P D+ I + GE+ A FC + + Y + R+ Sbjct: 186 QPDTFPQSDDLEDWELLPTKPDWS-GGIADFWTPGEKAAHDRFETFCDDLLSDYHKGRER 244 Query: 237 PAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMA 296 P TS++SPYL G +SP + W+ + P ++L EL+WR+F HL+ Sbjct: 245 PYADDTSRMSPYLRWGEISPYRLWHTAQAYANRRKTVPDEAIRTFLQELVWRDFNYHLLF 304 Query: 297 FYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMI 356 + + K F + W L+AW+ G TG+PI+DA MRQL GWMHNR+RMI Sbjct: 305 HFGPLA-DKNFNDRFDNFSWRSSKKDLKAWQNGLTGYPIVDAGMRQLWKTGWMHNRVRMI 363 Query: 357 TASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGK 416 SFL KDLL+DWR GE +F L+DGD+ASN WQW G D+ P+FRIFNP Q + Sbjct: 364 VGSFLTKDLLIDWRDGERWFWDTLVDGDIASNTAQWQWIGGAGADAQPFFRIFNPITQSE 423 Query: 417 RFDPQGTFIRHWLPELNNVPTQYIHAPHS----WLDKNDLSLN--YPLPIVDHKKACHHT 470 RFD G +IR ++PEL +P ++IHAP L+K + L YP P+VDH +A Sbjct: 424 RFDKNGAYIRQFVPELKEMPDKHIHAPWKADKDVLEKAGVKLGETYPEPLVDHSEARDRA 483 Query: 471 LNQYYAAK 478 L+ Y K Sbjct: 484 LSAYDEVK 491 >gi|149926765|ref|ZP_01915025.1| Deoxyribodipyrimidine photolyase [Limnobacter sp. MED105] gi|149824694|gb|EDM83910.1| Deoxyribodipyrimidine photolyase [Limnobacter sp. MED105] Length = 500 Score = 419 bits (1078), Expect = e-115, Method: Composition-based stats. Identities = 173/487 (35%), Positives = 243/487 (49%), Gaps = 24/487 (4%) Query: 8 SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQ-HGISARQSHFIYASLL 66 S L+W R DLR DN AL+ A + + +V VF+ + R+ FI+ S + Sbjct: 21 SKGLMWFRRDLRTHDNAALFYALKHCE-QVHCVFVYDKTILDALPNKADRRVEFIWESCM 79 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 ++ L G +D + + + V +F N+ YE + RD + K Sbjct: 80 ALKTKLQGFGGDLHLM----YDHAETAIPDLATKLGVQAVFTNKDYEPAAIHRDITVGKT 135 Query: 127 LQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPA-IRL 184 LQ + I F D + +L A + + V+TPF+ A ++ L L P A + Sbjct: 136 LQGKGIELFRFKDQAIFEEDEVLTQAGKFFSVFTPFKNACLKKLDAFHLTPYPSEARVGS 195 Query: 185 TGPVTPSNIPRFFDYPFQAID--PMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGT 242 + P F+ + M GE+ AL F ++ Y RD PAI+G Sbjct: 196 LAKDSNLTAPSLDHMGFKRTNLLDMIKPGEEGALDAFEDFL-NRMDKYKVARDFPAIKGV 254 Query: 243 SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVC 302 S LS + G +S R+ + F GA WLNELIWR+FY ++ P Sbjct: 255 SYLSVHNRFGTISIRRLAKAAYDRFK---FDGSEGAMGWLNELIWRDFYFQIIYHRPDAA 311 Query: 303 MGKPFIPWTEKIEWNKDSH---LLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITAS 359 K F P ++I+W+ D L +AW +G TG+P++DAA RQLN G+ HNRLRM+TAS Sbjct: 312 E-KAFKPEYDQIQWDADEKAQRLFKAWCEGKTGYPLVDAAQRQLNQTGFQHNRLRMVTAS 370 Query: 360 FLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFD 419 FL KDL +DWR GE+YF L D DL++NNGGWQWAAS+G D+ PYFRIFNP Q ++FD Sbjct: 371 FLTKDLGLDWRWGEKYFAEHLNDFDLSANNGGWQWAASSGCDAQPYFRIFNPYSQSEKFD 430 Query: 420 PQGTFIRHWLPELNNVPTQYIHAPHS------WLDKNDLSLNYPLPIVDHKKACHHTLNQ 473 G FIR + PEL + +YIH P + L YP P+V+H A TL + Sbjct: 431 ADGKFIRKYCPELAKLSNKYIHNPAECPPFELQMAGVVLGETYPRPVVEHDVARKKTLER 490 Query: 474 YYAAKKQ 480 Y KK Sbjct: 491 YSVVKKA 497 >gi|115396894|ref|XP_001214086.1| deoxyribodipyrimidine photo-lyase [Aspergillus terreus NIH2624] gi|114193655|gb|EAU35355.1| deoxyribodipyrimidine photo-lyase [Aspergillus terreus NIH2624] Length = 583 Score = 419 bits (1077), Expect = e-115, Method: Composition-based stats. Identities = 178/498 (35%), Positives = 263/498 (52%), Gaps = 21/498 (4%) Query: 3 ATTAMSVHLVWLRNDLRITDNKALYAACH---NSDAKVIAVFIATPEQWRQHGISARQSH 59 A + + W ++DLR+ DN+AL+ A + +I ++I +PE H S + Sbjct: 86 AVRPNAAVVHWFKSDLRLHDNRALHKAAQVAREHNLPLIGLYILSPEDLTAHLSSPARVD 145 Query: 60 FIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRR 119 +L Q+Q+ L++ I + C + LF N +YE++E+RR Sbjct: 146 LTLRTLAQLQRDLNESDIPLYMETQERRQAIPARIVELCQKWGANHLFANLEYEVDELRR 205 Query: 120 DKLLEKRLQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQA------ 172 + L + I + D+ ++PPGS+ + + Y VY+P+ +A + L + Sbjct: 206 EARLIRLCAKNGIRFDALHDTCVVPPGSLSSQQGKQYAVYSPWYRAWVAFLKENPDYLEV 265 Query: 173 ---------DLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFC 223 D R P P+N + D + + ++P GE ALH L F Sbjct: 266 SEEPGANSGDARKHFAELFDSEVPQAPAN-KQLSDSQKEHLSALYPAGEHEALHRLETFL 324 Query: 224 KEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLN 283 KEK Y E R+I A Q TS LSPY + G LS R + + +LL + + G SW++ Sbjct: 325 KEKAVEYDEDRNILAGQHTSVLSPYFASGSLSARTAVVQARRANKNLLDRNEPGYMSWIS 384 Query: 284 ELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQL 343 E+ WR+FY+H++ +P +CM K F P +EW D QAW +G TG P++DAAMRQL Sbjct: 385 EVAWRDFYKHVLVQWPFICMNKCFKPEFTDLEWEYDEIKFQAWCEGRTGVPVVDAAMRQL 444 Query: 344 NTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSV 403 N WMHNR RMI +S+L KDLL+DWR GE YFM L+DGD ASN+GGW + +STG D Sbjct: 445 NHDAWMHNRARMIVSSYLSKDLLIDWRRGERYFMEHLIDGDFASNHGGWGFGSSTGVDPQ 504 Query: 404 PYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSL-NYPLPIVD 462 PYFRIFNP Q +RFD +G +IRHW+PEL + IH P+ + YP +VD Sbjct: 505 PYFRIFNPLRQSERFDAEGEYIRHWVPELQGIEGAAIHDPYGRGAGDQAGRQGYPHALVD 564 Query: 463 HKKACHHTLNQYYAAKKQ 480 H ++ + L +Y A ++ Sbjct: 565 HSQSRNRALERYKRASQK 582 >gi|119477185|ref|ZP_01617421.1| putative photolyase [marine gamma proteobacterium HTCC2143] gi|119449548|gb|EAW30786.1| putative photolyase [marine gamma proteobacterium HTCC2143] Length = 477 Score = 419 bits (1077), Expect = e-115, Method: Composition-based stats. Identities = 156/482 (32%), Positives = 242/482 (50%), Gaps = 25/482 (5%) Query: 12 VWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQKS 71 +W R DLR+ DN AL AAC + +I V+I + Q + +++ +L + S Sbjct: 1 MWFRQDLRLADNPALCAACERGE--IIPVYILDDQGAGQWKMGGASRWWLHFALADLNAS 58 Query: 72 LSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHRV 131 L Q ++Q D++ L Q + +NR YE + RD ++ L+ Sbjct: 59 LKQCLQIYQ-------GDALTILGDLADQTGAATVVWNRCYEPWRIGRDATIKTSLKESG 111 Query: 132 I-CKSFDDSVLLPPGSILNHALQMYKVYTPF-RKALIQNLVQADLRSLPVPAIRLTGPVT 189 + +SF+ S+L P +L YKV+TP+ R+ + + P Sbjct: 112 LDVQSFNGSLLWEPWQVLKKDGTPYKVFTPYYRRGCLSTVAPRRPMDPPKTLKVFVDSGD 171 Query: 190 PSNIPRFFDYPF----QAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245 + P +++ + I E A L +F ++ Y E R+ PA Q S+L Sbjct: 172 SLELDNLNLLPKIAWDESMKACWDISEAAAHARLDEFVMNELQDYREGRNFPAKQNVSRL 231 Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305 SPYL G +SP W R E I + ++++EL WREF +L+ +P + Sbjct: 232 SPYLHFGQISPNSAWYRAAE--AGAFINNEQSLDTFMSELGWREFSYYLLYHWPKLPTEN 289 Query: 306 PFIPWTEKIEWNKD-SHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364 + W + L AW+QG TG+P++DA MR+L + G+MHNR+RM+ SFLVK+ Sbjct: 290 -LQTRFDLFPWANNTDEDLSAWQQGKTGYPLVDAGMRELYSTGYMHNRVRMVVGSFLVKN 348 Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424 LL+ W GEE+F L+D DLASN+ WQW A G D+ P+FRIFNP Q ++FD QG++ Sbjct: 349 LLIHWHRGEEWFWDCLVDADLASNSASWQWIAGCGADAAPFFRIFNPITQSEKFDKQGSY 408 Query: 425 IRHWLPELNNVPTQYIHAPHSWLDK------NDLSLNYPLPIVDHKKACHHTLNQYYAAK 478 IR ++PEL ++P +YIHAP + ++ +NYP P+VD K + L + K Sbjct: 409 IRRYVPELKDMPEKYIHAPWLAPAEVLAVAGVNIGINYPEPVVDIKVSRARALEAFAVTK 468 Query: 479 KQ 480 Q Sbjct: 469 IQ 470 >gi|238028072|ref|YP_002912303.1| Deoxyribodipyrimidine photolyase [Burkholderia glumae BGR1] gi|237877266|gb|ACR29599.1| Deoxyribodipyrimidine photolyase [Burkholderia glumae BGR1] Length = 489 Score = 419 bits (1077), Expect = e-115, Method: Composition-based stats. Identities = 154/495 (31%), Positives = 241/495 (48%), Gaps = 24/495 (4%) Query: 1 MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHF 60 + A + LVW R+DLR+TDN AL A S ++ V++ + R G + R + Sbjct: 3 LSADSQAQPALVWFRDDLRVTDNPALARAAE-SGRPLVCVYVFERDGTRPLGGAVR--WW 59 Query: 61 IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120 + +L + L+ +G + E + + + +++NR+Y+ D Sbjct: 60 LDGALRSLDAKLAAQGGGLVVLEGDER----ETIAALAGELGAGAVYWNRRYDGLARETD 115 Query: 121 KLLEKRLQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFR---------KALIQNLV 170 L++ L+ I +SF+ ++L P I + ++V+T + A + Sbjct: 116 AALKRSLKEAGIEVESFNGALLHEPWEIRTGSGGAFQVFTAYWRAARAAGELPAPLAEPA 175 Query: 171 QADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYY 230 + LP R + + + + E+ L L F +++ Y Sbjct: 176 KWRFHRLPEALARRATRIDALGLLPVRPDWAGGLREAWEPSEEGGLARLEAFLDKQIRGY 235 Query: 231 VEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREF 290 + RD P TS+LSPYL G LS RQ W+ + + + +L+EL WREF Sbjct: 236 GDARDRPDRPATSRLSPYLRFGQLSARQVWHAAQAAGREGGAAVAADIEKFLSELGWREF 295 Query: 291 YRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMH 350 L+ +P + M + + + + W D AW +G TG+P++DA MR+L GWMH Sbjct: 296 NTSLLYHFPELPM-RNYRDRFDAMPWRSDEAAFAAWCRGRTGYPLVDAGMRELWATGWMH 354 Query: 351 NRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFN 410 NR+RM+TASFL+K LL+DWR GE +F L+D D+A+N+ WQW A +G D+ PYFRIFN Sbjct: 355 NRVRMVTASFLIKHLLIDWRAGERWFWDTLVDADIANNSANWQWVAGSGADAAPYFRIFN 414 Query: 411 PTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHS----WLDKND--LSLNYPLPIVDHK 464 P +QG++FDP G ++R W+PEL +P IH P L+ L YP PIVDH Sbjct: 415 PVMQGRKFDPDGAYVRRWVPELAGLPADAIHEPWRAKPVVLEAAGVVLGRTYPAPIVDHD 474 Query: 465 KACHHTLNQYYAAKK 479 A L A K+ Sbjct: 475 AARKRALGALEATKR 489 >gi|29654479|ref|NP_820171.1| deoxyribodipyrimidine photolyase [Coxiella burnetii RSA 493] gi|212212435|ref|YP_002303371.1| deoxyribodipyrimidine photolyase [Coxiella burnetii CbuG_Q212] gi|29541746|gb|AAO90685.1| deoxyribodipyrimidine photolyase [Coxiella burnetii RSA 493] gi|212010845|gb|ACJ18226.1| deoxyribodipyrimidine photolyase [Coxiella burnetii CbuG_Q212] Length = 472 Score = 419 bits (1077), Expect = e-115, Method: Composition-based stats. Identities = 180/478 (37%), Positives = 265/478 (55%), Gaps = 24/478 (5%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 + W R DLR++DN AL A ++D +I ++I + + Q +++ SL + Sbjct: 2 TTIFWFRQDLRLSDNPALVEAAKSAD-HLIPLYILDDQL---KMLGDAQRWWLHHSLSSL 57 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128 Q +LS+KG + D+ L + +V K+++NR YE D LE RL Sbjct: 58 QTALSKKGTSLILKKG----DTKRVLLELIKKYKVEKIYWNRSYEPPYREIDTYLENRLP 113 Query: 129 HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVP-----AIR 183 + + + ++L P I N + YK++TPF K + +L + P AI+ Sbjct: 114 P-LSVEIYHSTLLTEPQKIKNKSGGYYKIFTPFWKHINASLQPRKTLAAPKKFSQHRAIK 172 Query: 184 LTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS 243 T + +P+ D+ Q D + GE+NA +L+KF KE + Y RD P I TS Sbjct: 173 SDNLETWNLLPKHPDWS-QGFDQ-WKPGEKNAQIVLKKFIKENLKNYPAHRDRPDISSTS 230 Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCM 303 LSPYL G +S RQ W + + + + A +L +LIWREF +L+ +P + Sbjct: 231 HLSPYLHFGEISIRQVWTAITQATIQ-DKNLQKAADVFLRQLIWREFAYYLLWHFPQMGR 289 Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363 F + +W K+ + L+AW++G TG+PI+DA MR+L G+MHNR+RMI ASFLVK Sbjct: 290 SN-FRNQFDNFKWKKNKNWLRAWQKGLTGYPIVDAGMRELWCTGYMHNRVRMIVASFLVK 348 Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423 DL++DWR GE++F + LLD DLA+N GWQW A G D+ PYFRIFNP +Q K+FDP GT Sbjct: 349 DLMIDWREGEKWFWNTLLDADLANNALGWQWIAGCGPDAAPYFRIFNPILQSKKFDPDGT 408 Query: 424 FIRHWLPELNNVPTQYIHAPHSWLD------KNDLSLNYPLPIVDHKKACHHTLNQYY 475 +I+ W+PEL VP++YIH P D K +L ++YP PIV+H KA L Y Sbjct: 409 YIKRWIPELAKVPSKYIHYPADMPDNISESSKVNLGVDYPFPIVNHHKAKELALKAYK 466 >gi|187921432|ref|YP_001890464.1| Deoxyribodipyrimidine photo-lyase [Burkholderia phytofirmans PsJN] gi|187719870|gb|ACD21093.1| Deoxyribodipyrimidine photo-lyase [Burkholderia phytofirmans PsJN] Length = 499 Score = 419 bits (1077), Expect = e-115, Method: Composition-based stats. Identities = 172/499 (34%), Positives = 252/499 (50%), Gaps = 37/499 (7%) Query: 4 TTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATP-------EQWRQHGIS-- 54 + LVW R DLR TDN ALY A + + +V VF+ E W+ Sbjct: 8 NDSFDTGLVWFRRDLRSTDNAALYYALKHCE-RVWCVFVFDTTILQPLVEAWQARHPDTQ 66 Query: 55 --ARQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQY 112 R+ I +L ++ ++L G + D + + + V +F N Y Sbjct: 67 PQDRRIELILGALGELDEALRANGGGLIVL----YGDPADLVPKLADELGVDAVFANHDY 122 Query: 113 EINEVRRDKLLEKRLQHRV-ICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQ 171 E + RD+ + + L +F D V+ +L + + V+TP++ A ++ L Sbjct: 123 EPVAIARDETVRETLAEAGRQWLTFKDQVIFERDEVLTGQNKPFTVFTPYKNAWLKQLTA 182 Query: 172 ADLRSLPVPAIRLTGPVTPSNIPR----FFDYPFQAIDPM---FPIGEQNALHILRKFCK 224 DL+ PV + PS + R F + P G A +L F Sbjct: 183 FDLKPYPVESYTKHLAAPPSKLDRRLPTLDQLGFAPSNLAELDLPAGMSGAQRLLDDF-A 241 Query: 225 EKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNE 284 ++ Y ++RD PA +G S LS +L G +S R E + G+ +WL+E Sbjct: 242 TRIDSYKDRRDFPAAKGPSYLSIHLRFGTVSIRTLARLAHEMSLQ---PDGEGSTTWLSE 298 Query: 285 LIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHL---LQAWKQGYTGFPIIDAAMR 341 LIWR+FY ++A +P + G F +++ W + AW G TG+P++DAAM Sbjct: 299 LIWRDFYFMILAHHPRLANGASFKEEYDQLRWEQGPEADEAFAAWCDGRTGYPLVDAAML 358 Query: 342 QLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGND 401 QLN G+MHNRLRM+TASFLVKDL VDWR+GE YF QL D D ++NNGGWQWAASTG D Sbjct: 359 QLNRTGYMHNRLRMVTASFLVKDLGVDWRLGERYFAQQLNDFDFSANNGGWQWAASTGCD 418 Query: 402 SVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKN------DLSLN 455 + PYFRIFNP Q ++FD +G FI+ +LP+L +P+++IHAP + L + Sbjct: 419 AQPYFRIFNPITQSEKFDAEGRFIKRYLPQLARLPSKWIHAPWLAGTERLAEFGVVLGKD 478 Query: 456 YPLPIVDHKKACHHTLNQY 474 YP PIVDH +A TL ++ Sbjct: 479 YPAPIVDHAEARARTLARF 497 >gi|297539339|ref|YP_003675108.1| Deoxyribodipyrimidine photo-lyase [Methylotenera sp. 301] gi|297258686|gb|ADI30531.1| Deoxyribodipyrimidine photo-lyase [Methylotenera sp. 301] Length = 479 Score = 419 bits (1076), Expect = e-115, Method: Composition-based stats. Identities = 172/478 (35%), Positives = 250/478 (52%), Gaps = 25/478 (5%) Query: 10 HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQH-GISARQSHFIYASLLQV 68 LVW R DLR D+ ALY A +S KV VF+ Q + R+ FI+ S+ ++ Sbjct: 13 SLVWFRRDLRDYDHAALYHALKSSK-KVYCVFVFDTAILNQLNDKADRRVEFIWESVREL 71 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL- 127 + SL + G + D+ + V +F N YE + + RD + ++L Sbjct: 72 KTSLQKHGSDLIVLHGNAGDE----IPKLANTLLVNAVFTNHDYEPSAITRDAHVAEQLN 127 Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPV-PAIRLTG 186 + + + D V+ +LN + + Y V+TP++ ++ + ++ PV + Sbjct: 128 KSSIAFHHYKDHVIFEKDEVLNLSGKPYCVFTPYKNMWLKTVNDFFFKAYPVDNHLNNLA 187 Query: 187 PVTPSNIPRFFDYPFQAIDPM---FPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS 243 S D F+ + P G Q L + F E++ Y + RD PAI+G S Sbjct: 188 KTNASPFISLEDLGFKHTNLASMRLPTGMQGGLTLFNDFI-ERMSRYKDARDFPAIKGVS 246 Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCM 303 LS +L G +S R + + +GA +WL+ELIWR+FY ++ PSV Sbjct: 247 YLSVHLRFGTISIRHL-------AREAMQSANTGAQTWLSELIWRDFYVQILHHNPSVAA 299 Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363 G+ + E +++ D+ L QAW G TG+P++DAAMRQLNT G+MHNRLRM+ ASFLVK Sbjct: 300 GRAYKVEFESLKFPNDTALFQAWCDGKTGYPLVDAAMRQLNTTGFMHNRLRMVAASFLVK 359 Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423 DLL+DWR GE YF +L+D DL++NNGGWQWAASTG D+ P+FRIFNP Q +RFD QG Sbjct: 360 DLLIDWRWGERYFAEKLIDFDLSANNGGWQWAASTGCDAQPWFRIFNPITQSERFDAQGK 419 Query: 424 FIRHWLPELNNVPTQYIHAPHSWLDKN------DLSLNYPLPIVDHKKACHHTLNQYY 475 FIR ++PEL + IHAP + +Y P+VDH L Y Sbjct: 420 FIRKYVPELTKCNDKEIHAPWLIPLLRLQELNLSIGKDYAAPVVDHATQRLQALALYK 477 >gi|145258924|ref|XP_001402217.1| deoxyribodipyrimidine photo-lyase [Aspergillus niger CBS 513.88] gi|134074832|emb|CAK38946.1| unnamed protein product [Aspergillus niger] Length = 584 Score = 419 bits (1076), Expect = e-115, Method: Composition-based stats. Identities = 168/487 (34%), Positives = 256/487 (52%), Gaps = 21/487 (4%) Query: 11 LVWLRNDLRITDNKALYAA---CHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67 + W + DLR+ DN+ L A ++ ++I +PE H SA + + +L Sbjct: 95 VHWFKTDLRLHDNRGLQMAYQVAREHKLPLVGLYILSPEDLTAHLSSAPRVDLMLRTLEL 154 Query: 68 VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127 +++ LS+ I +D + + C + T LF N +YE++E+RR+ L + Sbjct: 155 LRRDLSELDIPLYMETQEKRNDIPQRIIDLCQEWGATHLFANLEYEVDELRREAKLVRLC 214 Query: 128 QHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQAD--------LRSLP 178 I ++ D+ ++ PG +++ + Y VY+P+ +A L + S P Sbjct: 215 ARNGIRFEAAHDTCVVTPGKLVSQQGKQYAVYSPWFRAWCAFLNENPEYLEVADEPGSNP 274 Query: 179 VPAIRLTG-------PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYV 231 A + PV P N R + ++P GE AL L F +EK Y Sbjct: 275 GDARKHFKTLFGCEVPVAPEN-KRLSEEEKTRFRELYPEGEHEALRRLEAFLEEKANDYD 333 Query: 232 EQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFY 291 + R+ A + TS LSPY + G LS R + +++ L + ++G SW++E+ WR+FY Sbjct: 334 DLRNTLAGRNTSVLSPYFASGSLSARTAVFQARKKNKGHLKRNQTGYTSWISEVAWRDFY 393 Query: 292 RHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHN 351 +H++ +P +CM K F P + W+ + AW +G TG+PI+DAAMRQ+ WMHN Sbjct: 394 KHVLVHWPFICMNKCFKPEFTNLAWSYNKDHFNAWCEGKTGYPIVDAAMRQIKHAAWMHN 453 Query: 352 RLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNP 411 R RM+ +SFL KDLL+DWR GE YFM L+DGD ASN+GGW + +STG D PYFRIFNP Sbjct: 454 RTRMVVSSFLSKDLLIDWRRGERYFMENLIDGDFASNHGGWGFGSSTGVDPQPYFRIFNP 513 Query: 412 TIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLN-YPLPIVDHKKACHHT 470 Q +RFDP+G +IR W+PEL + +H P+ + N YP PIVDH ++ Sbjct: 514 LRQSERFDPEGEYIRLWVPELRAIEGAAVHDPYGRGAGDIAEKNGYPRPIVDHSESRDRA 573 Query: 471 LNQYYAA 477 L Y Sbjct: 574 LENYKKV 580 >gi|332093770|gb|EGI98824.1| deoxyribodipyrimidine photo-lyase [Shigella boydii 5216-82] Length = 406 Score = 419 bits (1076), Expect = e-115, Method: Composition-based stats. Identities = 209/405 (51%), Positives = 279/405 (68%), Gaps = 5/405 (1%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M+ HL W R DLR+ DN AL AAC NS A+V+A++IATP QW H +S RQ+ I A L Sbjct: 1 MTTHLAWFRQDLRLHDNLALAAACRNSSARVLALYIATPRQWETHNMSPRQAELINAQLN 60 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 +Q +L++KGI + + +F S+E + C + VT LFYN QYE+NE RD +E+ Sbjct: 61 GLQIALAEKGIPLLFREVDDFVASVEIVKQVCAENSVTHLFYNYQYEVNERARDVDVERA 120 Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 L+ V+C+ FDDSV+LPPG+++ +MYKV+TPF+ A ++ L + + P +R +G Sbjct: 121 LR-NVVCEGFDDSVILPPGAVMTGNHEMYKVFTPFKNAWLKRLREGMPECVAAPKVRSSG 179 Query: 187 PVTPSNIPRFFDYPFQAIDP-MFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245 + P+ +YP Q+ D FP+ E+ A+ LR+FC+ Y +QRD PA++GTS+L Sbjct: 180 SIKPAPSITL-NYPRQSFDTAHFPVEEKAAIAQLRQFCENGAGEYEQQRDFPAVEGTSRL 238 Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305 S L+ G L PRQC RL E L WL+ELIWREFYRHLM +YPS+C + Sbjct: 239 SASLATGGLLPRQCLYRLLAEQPQALDGGAGSV--WLSELIWREFYRHLMTYYPSLCKHR 296 Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365 PFI WT++++W + LQAW++G TG+PI+DAAMRQLN+ GWMHNRLRMITASFLVKDL Sbjct: 297 PFIAWTDRVQWQSNPAHLQAWQKGKTGYPIVDAAMRQLNSTGWMHNRLRMITASFLVKDL 356 Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFN 410 L+DWR GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYF+ N Sbjct: 357 LIDWREGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFQSDN 401 >gi|34498936|ref|NP_903151.1| deoxyribodipyrimidine photo-lyase [Chromobacterium violaceum ATCC 12472] gi|34104785|gb|AAQ61142.1| deoxyribodipyrimidine photo-lyase [Chromobacterium violaceum ATCC 12472] Length = 471 Score = 418 bits (1075), Expect = e-115, Method: Composition-based stats. Identities = 173/478 (36%), Positives = 244/478 (51%), Gaps = 25/478 (5%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 LVWLR DLR+ D+ A Y A +S+A V+ VF+ R+ FI+ S + Sbjct: 7 TALVWLRRDLRLDDHAAFYHALKHSEA-VLPVFVFDASILAALPRDDRRVDFIWQSAAAL 65 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128 + L+Q G + + + +F NR YE RD + +RL Sbjct: 66 KAELNQLGGDLLIRHGLPQHE----IPRLAAELGAEAVFCNRDYEPAARARDAEVAQRLA 121 Query: 129 HRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPA-IRLTG 186 + + + D V+ +L A + + V+TP++ A ++ L L++ PV + Sbjct: 122 EQGVAFRDSKDQVIFETDEVLTGAGKPFSVFTPYKNAWLKKLTPFHLQAYPVRRYLDALM 181 Query: 187 PVTPSNIPRFFDYPFQAIDPM---FPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS 243 P P ++P D F D G A + F ++ Y QRD P ++G S Sbjct: 182 PREPQSMPSLADIGFLPSDLASLPVKAGAAGAEALFADF-AGRIERYKAQRDFPGVKGVS 240 Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCM 303 LS +L G LS R+ GA +WL+ELIWR+FY+ ++ P Sbjct: 241 YLSVHLRFGTLSIRRLAAYAWH-------DGGEGAMTWLSELIWRDFYQQVLWHRPDAAK 293 Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363 F P + + + D AW++G TG+P++DAAMRQLN G+MHNRLRM+ ASFLVK Sbjct: 294 H-AFKPEYDALPFPNDPEWFDAWREGRTGYPLVDAAMRQLNRSGYMHNRLRMVAASFLVK 352 Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423 DLL+DWR GE+YF +LLD DLA+NNGGWQWAASTG D+ PYFRIFNP Q ++FDP G Sbjct: 353 DLLIDWRWGEQYFAEKLLDFDLAANNGGWQWAASTGCDAQPYFRIFNPVSQSEKFDPDGR 412 Query: 424 FIRHWLPELNNVPTQYIHAPHSWLDKN------DLSLNYPLPIVDHKKACHHTLNQYY 475 FIR ++PEL +P + IHAP + L +YP PIVDH L + Sbjct: 413 FIRRYVPELAALPDKLIHAPWQAKPEQLMSAGVRLGRDYPHPIVDHAVQRELALALFK 470 >gi|254445216|ref|ZP_05058692.1| deoxyribodipyrimidine photolyase family [Verrucomicrobiae bacterium DG1235] gi|198259524|gb|EDY83832.1| deoxyribodipyrimidine photolyase family [Verrucomicrobiae bacterium DG1235] Length = 472 Score = 418 bits (1075), Expect = e-115, Method: Composition-based stats. Identities = 168/485 (34%), Positives = 241/485 (49%), Gaps = 28/485 (5%) Query: 5 TAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYAS 64 + S +VW R DLR+ DN AL A + + V+ V++ E A +++ S Sbjct: 2 SDASPVIVWFRRDLRLADNPALSEALASGE-PVLPVYVFDEEGEGDSPDGAASKWWLHHS 60 Query: 65 LLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLE 124 L + +SL G + S S L C + +F+NR+YE V RD ++ Sbjct: 61 LASLDESLKGLGSRLVLLRGS----SKSALVELCREMGARAVFWNRRYEPAVVERDTEIK 116 Query: 125 KRL-QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIR 183 K L V +SF+ S++ P S+ N + +KV+TPF IQNL + P Sbjct: 117 KSLVDCGVQARSFNGSLMQSPLSVANKSGTPFKVFTPFW-KHIQNLSTRTPLAKPDALTT 175 Query: 184 LTGPVTPSNIPRFFDYP----FQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAI 239 ++ F P + + GE+ A L F K Y + RD P++ Sbjct: 176 PKSLPKGESLESFELLPRLSWADGFNEEWIPGEKGAEKALSLFAKGGAAKYAKDRDTPSV 235 Query: 240 QGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYP 299 +G S+LSP+L G +SP Q W+ L + + +L ++ WREF HL+ + Sbjct: 236 RGVSRLSPHLHFGEISPNQIWHALDRKKHE----------PYLRQIAWREFAHHLLFHFK 285 Query: 300 SVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITAS 359 +P P W ++ L+AW+ G TG+PI+DA MR+L GWMHNR+RMI +S Sbjct: 286 DTP-SEPLRPEFAAFPWTRNPGWLKAWQTGQTGYPIVDAGMRELWQTGWMHNRVRMIASS 344 Query: 360 FLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFD 419 FLVK LL W+ G +F L+D DLA+N GWQW A G D+ PYFRIFNP QG+RFD Sbjct: 345 FLVKHLLQPWQDGAAWFWDTLVDADLANNTMGWQWVAGCGADAAPYFRIFNPITQGERFD 404 Query: 420 PQGTFIRHWLPELNNVPTQYIHAPHSWLDK------NDLSLNYPLPIVDHKKACHHTLNQ 473 GT+ R W+PEL +P +Y+ P DL NYP+PIVDH KA L+ Sbjct: 405 GDGTYTRRWMPELARLPNKYLFKPWEAPAALLEKAGVDLGGNYPMPIVDHGKARKAALDA 464 Query: 474 YYAAK 478 Y + Sbjct: 465 YAEMR 469 >gi|313201853|ref|YP_004040511.1| deoxyribodipyrimidine photo-lyase [Methylovorus sp. MP688] gi|312441169|gb|ADQ85275.1| Deoxyribodipyrimidine photo-lyase [Methylovorus sp. MP688] Length = 481 Score = 418 bits (1074), Expect = e-114, Method: Composition-based stats. Identities = 172/490 (35%), Positives = 255/490 (52%), Gaps = 25/490 (5%) Query: 5 TAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQ-HGISARQSHFIYA 63 T S LVW R DLR D+ ALY A + V F+ + + R+ FI+ Sbjct: 2 TTSSYALVWFRRDLRDFDHAALYHALK-AHTHVYCAFVFDTDILDALPDRADRRVEFIWE 60 Query: 64 SLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLL 123 S+ ++Q++L +G + E + + ++ + + ++ NR YE + V RD + Sbjct: 61 SVRELQQALRSQGGDLIMLHA----CAKEGIPALAVKLKASAVYSNRDYEPDAVARDAEV 116 Query: 124 EKRLQ-HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAI 182 +L H + + D V+ +L A + Y V+TP++ A ++ L L++ PV Sbjct: 117 AAKLASHDIAFHQYKDQVIFEQDEVLTQAGKPYGVFTPYKNAHLKKLNDFYLQAYPVDRY 176 Query: 183 RL-TGPVTPSNIPRFFDYPFQAIDP---MFPIGEQNALHILRKFCKEKVYYYVEQRDIPA 238 R + +P F + P G + +F +E++ Y + RD PA Sbjct: 177 RQHLAAADKTEMPTLESMGFARTNLGEMKLPTGMSGGQQLFAEF-QERMARYKDARDFPA 235 Query: 239 IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFY 298 ++G S LS +L G +S R ++ +GA +WLNELIWR+FY ++ + Sbjct: 236 VKGPSYLSVHLRFGTVSIRHLARTAWQQ-------HNAGAETWLNELIWRDFYFQVLHHH 288 Query: 299 PSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITA 358 P V G+ F + I + L AW +G TG+P++DAAMRQLN G+MHNRLRM+TA Sbjct: 289 PQVAAGRAFKLEFDAIAFPNQQALFDAWCEGRTGYPLVDAAMRQLNQTGYMHNRLRMVTA 348 Query: 359 SFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRF 418 SFLVKDLL+DWR GE YF +L+D DLA+NNGGWQWAASTG D+ P+FRIFNP Q ++F Sbjct: 349 SFLVKDLLIDWRWGERYFAERLIDFDLAANNGGWQWAASTGCDAQPWFRIFNPVTQSEKF 408 Query: 419 DPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND------LSLNYPLPIVDHKKACHHTLN 472 D QG FIR ++PEL + IHAP + +YP P+V+H L Sbjct: 409 DAQGKFIRKYVPELAACHEKEIHAPWLMPPLRQQSLGLVIGKDYPAPVVEHSVQREKALA 468 Query: 473 QYYAAKKQSL 482 Y A +L Sbjct: 469 LYKNASSTAL 478 >gi|320160751|ref|YP_004173975.1| deoxyribodipyrimidine photolyase [Anaerolinea thermophila UNI-1] gi|319994604|dbj|BAJ63375.1| deoxyribodipyrimidine photolyase [Anaerolinea thermophila UNI-1] Length = 466 Score = 418 bits (1074), Expect = e-114, Method: Composition-based stats. Identities = 172/482 (35%), Positives = 247/482 (51%), Gaps = 25/482 (5%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M+ L W+R DLR+ D+ AL A +VI VFI ++ ++++ F+++ L Sbjct: 1 MTTILWWIRRDLRLHDHPALEYALQKG--RVIPVFILDDRLLQKE--ASKRKQFLFSGLR 56 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 Q+ + L ++G + + + L + ++ Y RRD + + Sbjct: 57 QLDEDLRKRGSQLIIRRG----EPLAELTRLIQETGAEEIVALEDYSPYARRRDSHIARE 112 Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 L F + PP +L Y V+TPF +A S V ++ Sbjct: 113 LP----LHLFAGETVYPPSLVLKPDGSPYTVFTPFSRAWKAL----PFASPSVVSLPERF 164 Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246 P P + P FP GE AL L F Y + R+ GTS LS Sbjct: 165 PAVPDKLVSLP-IPEAIFLQDFPPGELEALRRLENFLSGPAREYADGRNRLDQPGTSFLS 223 Query: 247 PYLSIGVLSPRQCWNRLKEE-FVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305 PY G+LSPR ++++ + K G +WLNELIWREFY ++ YP V + Sbjct: 224 PYFRFGMLSPRWAVFQVRKMIQITSSPDEKRGYEAWLNELIWREFYISILYHYPHV-LAM 282 Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365 F P IEW LQAWK+G TG+P++DAAMRQL GWMHNR RMI ASFL KDL Sbjct: 283 AFNPALRAIEWRDAPSELQAWKEGKTGYPVVDAAMRQLKATGWMHNRARMIVASFLTKDL 342 Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425 L++W+ GE++FM L+DGD A+NNGGWQW A G D+ PYFRIFNP +Q +FDPQG +I Sbjct: 343 LINWQEGEQWFMQNLVDGDPAANNGGWQWTAGVGTDAAPYFRIFNPVLQSAKFDPQGRYI 402 Query: 426 RHWLPELNNVPTQYIHAPHSWLDKND------LSLNYPLPIVDHKKACHHTLNQYYAAKK 479 + W+PEL +VPT++IHAP + + +YP P+VDH++ L Y ++ Sbjct: 403 KTWVPELTSVPTEFIHAPWTMPLSLQISLGVRIGRDYPTPMVDHQEVRGRVLEAYRTSQG 462 Query: 480 QS 481 ++ Sbjct: 463 KT 464 >gi|254497872|ref|ZP_05110637.1| deoxyribodipyrimidine photolyase [Legionella drancourtii LLAP12] gi|254352870|gb|EET11640.1| deoxyribodipyrimidine photolyase [Legionella drancourtii LLAP12] Length = 477 Score = 418 bits (1074), Expect = e-114, Method: Composition-based stats. Identities = 173/480 (36%), Positives = 264/480 (55%), Gaps = 19/480 (3%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 MS +VW R DLR DN+AL AC++ +I ++I + Q + A Q +++ SLL Sbjct: 1 MSTAIVWFRQDLRCNDNQALAEACNHHQY-IIPLYI-----YSQESLGAAQHWWLHHSLL 54 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 +QK L ++G+ C ++ + ++ +++NR YE ++RDK ++ Sbjct: 55 ALQKELKKQGLDL----CLKQGQALSIIHELIKNHKIEAVYWNRCYEPKSIQRDKQIKDE 110 Query: 127 LQ-HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSL-PVPAIRL 184 L+ + SF+ S+L P ++ N +KV+TP+ K I+ Q+ + S+ P Sbjct: 111 LRLKGLQVYSFNGSLLNEPWTVKNKNGDYFKVFTPYWKQCIRQTTQSRVSSINQRPPPLT 170 Query: 185 TGPVTPSNIPRFFDYPFQAIDP--MFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGT 242 + S+ P AI+ + GE A++ L F + + Y E R+ P+ T Sbjct: 171 STSEQLSDWRLLPQKPNWAIEFPNYWEPGEHGAMNKLNFFIEHHLQDYQEARNHPSKTAT 230 Query: 243 SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVC 302 S+L+P+L G +SP Q WN ++E + A +L EL WREF +L+ +P + Sbjct: 231 SRLAPHLHFGEISPWQVWNAIEEAKLQPKC-DLRSADHFLAELGWREFSYYLLYHFPELP 289 Query: 303 MGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLV 362 K F + W +D L+ W+ G TGFPI+DA MR+L G+MHNR+RMI ASFL+ Sbjct: 290 -NKNFRQEFDAFPWQQDETHLKCWQTGMTGFPIVDAGMRELWHTGYMHNRVRMIVASFLI 348 Query: 363 KDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQG 422 KDL++DWR G +F + LLD DLA+N+ WQW A TG DS PYFRIFNPT+Q ++FDPQG Sbjct: 349 KDLMIDWRAGAAWFYNTLLDADLANNSASWQWVAGTGADSAPYFRIFNPTLQSEKFDPQG 408 Query: 423 TFIRHWLPELNNVPTQYIHAPHSWLDKN---DLSLNYPLPIVDHKKACHHTLNQYYAAKK 479 +I+ W+PEL+ VP Q+IH P + L +YP P+VDH L Y + +K Sbjct: 409 EYIKMWIPELSQVPRQWIHKPWEAPPQTLAITLGKDYPYPLVDHALVRKIALQHYQSLRK 468 >gi|47169691|dbj|BAD18969.1| photolyase [Bipolaris oryzae] Length = 634 Score = 418 bits (1074), Expect = e-114, Method: Composition-based stats. Identities = 175/487 (35%), Positives = 254/487 (52%), Gaps = 22/487 (4%) Query: 12 VWLRNDLRITDNKALYAACHNSDAK---VIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 W + DLR+ DN L A + +K ++AV+I +P+ W H +S + F S+ + Sbjct: 141 HWFKRDLRVRDNTGLSKAAELAKSKGIGLVAVWIMSPQDWEAHLVSPPKCDFELRSVQLL 200 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD-KLLEKRL 127 ++ L + I + + L L+ V +F N +YE +E+RR+ +L+ L Sbjct: 201 KQELEELDIPLYIETVHERKNIKKRLVEMALEWNVKSVFCNLEYEPDELRREERLVRMML 260 Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187 + + D ++PPGS+ + Y VYTP+ +A I L Sbjct: 261 EKGINMDPQHDDCVVPPGSLKTGTGKQYAVYTPWYRAWIAYLHAHPHLLNERSMPEKNPT 320 Query: 188 VTPSNIPRFFD--------------YPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQ 233 + FD + ++P GE A+ L +F EKV Y + Sbjct: 321 GFREKFTKLFDSRVPDLPDCKSLTAEEKERFHHLWPAGEAAAIDRLERFLTEKVIKYKDT 380 Query: 234 RDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKE-EFVDLLIKPKSGAFSWLNELIWREFYR 292 R+ PA+ T ++S + + G L+ R ++ V L K G W+ E+ WR+FYR Sbjct: 381 RNFPALNSTGRISAHHAAGTLAARTSVRMARDINSVKKLDGGKEGIKGWIGEVAWRDFYR 440 Query: 293 HLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNR 352 H++ +P VCM KPF IEW + +AW QG TG+PI+DAAMR L G+MHNR Sbjct: 441 HVLVHWPYVCMNKPFKYEYTNIEWEYNDAHFEAWTQGRTGYPIVDAAMRCLKHTGYMHNR 500 Query: 353 LRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPT 412 LRMITASFL K LL+DWR+GE+YF++ L+DGD ASNNGGW ++ASTG D PYFRIFNP Sbjct: 501 LRMITASFLAKHLLLDWRLGEQYFITHLIDGDFASNNGGWGFSASTGVDPQPYFRIFNPW 560 Query: 413 IQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWL-DKNDLSL--NYPLPIVDHKKACHH 469 Q ++FD QG FIR W+ EL +V IH P+ + ++ YP PIV+HK A Sbjct: 561 TQSEKFDEQGEFIRLWVKELEDVQGAAIHNPYQAKGEAAKIAKKNGYPEPIVEHKFARER 620 Query: 470 TLNQYYA 476 L +Y A Sbjct: 621 CLARYKA 627 >gi|170691102|ref|ZP_02882268.1| Deoxyribodipyrimidine photo-lyase [Burkholderia graminis C4D1M] gi|170144351|gb|EDT12513.1| Deoxyribodipyrimidine photo-lyase [Burkholderia graminis C4D1M] Length = 493 Score = 418 bits (1074), Expect = e-114, Method: Composition-based stats. Identities = 176/494 (35%), Positives = 251/494 (50%), Gaps = 37/494 (7%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATP-------EQWRQHGISA----RQ 57 LVW R DLR TD+ ALY A + + +V VF+ + W+ A R+ Sbjct: 7 TALVWFRRDLRTTDHAALYHALKHCE-RVWCVFVFDTTILQPLIDTWQARHPGAPAQDRR 65 Query: 58 SHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEV 117 FI ASL ++ +L +G + D + + + RV +F N YE + Sbjct: 66 VEFILASLRELDDALRAQGGGLIVL----YGDPADLVPKLADELRVDAVFANHDYEPAAI 121 Query: 118 RRDKLLEKRLQHRV-ICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRS 176 RD+ + +RL C +F D V+ +L + + V+TP++ A ++ L L+ Sbjct: 122 ERDETVRERLAEAGRACLTFKDQVIFERAELLTGQNKPFTVFTPYKNAWLKQLTSFYLKP 181 Query: 177 LPVPA-IRLTGPVTPSNIPRFFDYPFQAIDPM------FPIGEQNALHILRKFCKEKVYY 229 PV + P + P P G A +L F ++ Sbjct: 182 YPVETYANRLAALPPGLNRQLPTLEQLGFAPGNLAELDLPTGMSGAQRLLDDFVT-RIAS 240 Query: 230 YVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWRE 289 Y E+RD PA +G S LS +L G +S R E + GA +WL+ELIWR+ Sbjct: 241 YAERRDFPAARGPSYLSVHLRFGTVSIRTLARLAHEISLQ---PDGRGAATWLSELIWRD 297 Query: 290 FYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQA---WKQGYTGFPIIDAAMRQLNTI 346 FY +++ +P + G F + + W + A W +G TG+P+IDAAM QLN Sbjct: 298 FYFMILSHHPRLASGASFKQEYDALRWEQGPAADAAFAAWCEGRTGYPLIDAAMLQLNRT 357 Query: 347 GWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYF 406 G+MHNRLRM+TASFLVKDL +DWR GE YF QL D DLA+NNGGWQWAASTG D+ PYF Sbjct: 358 GYMHNRLRMVTASFLVKDLGIDWRRGERYFADQLNDYDLAANNGGWQWAASTGCDAQPYF 417 Query: 407 RIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKN------DLSLNYPLPI 460 RIFNP Q ++FD G FI+ +LP+L +P +++HAP + L +YP PI Sbjct: 418 RIFNPITQSEKFDADGRFIKRYLPQLAKLPAKWVHAPWLAGAQKLAAFGVVLGEDYPQPI 477 Query: 461 VDHKKACHHTLNQY 474 VDH +A TL ++ Sbjct: 478 VDHAQARARTLARF 491 >gi|225865104|ref|YP_002750482.1| deoxyribodipyrimidine photolyase family protein [Bacillus cereus 03BB102] gi|225786063|gb|ACO26280.1| deoxyribodipyrimidine photo-lyase [Bacillus cereus 03BB102] Length = 476 Score = 417 bits (1073), Expect = e-114, Method: Composition-based stats. Identities = 153/480 (31%), Positives = 249/480 (51%), Gaps = 22/480 (4%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 +V + D R+ DN AL+ A + + V+ V++ + + +++ +++ VQK Sbjct: 6 IVIFQKDFRLYDNPALFEAAQSGE--VVPVYVHD----ETFSMGSASKWWLHHAIIDVQK 59 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ-H 129 L G + + E + S Q +T +++N Y+ ++++ ++ ++ L+ Sbjct: 60 QLEALGSTLIIRKGNT----QEEILSLIEQLDITAVYWNICYDPDKLQSNQKMKIVLEGK 115 Query: 130 RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPA--IRLTGP 187 ++CK F+ +LL P I YKV+TPF A + ++ + + L Sbjct: 116 GIVCKEFNSHLLLEPWIIKKKDNTEYKVFTPFYNAFQKQVIPKPISKVQRIKGGNSLPAS 175 Query: 188 VTPSNIPRFFDYPFQA-IDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246 ++ S + + + I+ ++ E+ A +KF K+ +Y E RD P S L+ Sbjct: 176 LSVSELHLLPTIRWTSHIELIWEPTEEGAYKTCKKFFSSKLAFYCEGRDFPNENAHSMLA 235 Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKP-KSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305 PYLS G +S + ++ L + + + S++ + IWREF +L+ YP + K Sbjct: 236 PYLSFGQISVKWMYHYLINKSTERQCSLFEKQVNSFIRQFIWREFSYYLLYHYP-FTVYK 294 Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365 P E WNK+ LL W++G TG+P IDA MR+L G+MHNR RM ASFLVK L Sbjct: 295 PLNKSFEHFPWNKEDELLTVWQKGETGYPFIDAGMRELWQTGFMHNRARMAVASFLVKHL 354 Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425 L+ W+ G ++FM LL D+A+N GWQW A +G D+ PYFRIFNP QG++FD G +I Sbjct: 355 LIPWQEGAKWFMDTLLAADIANNTMGWQWVAGSGADASPYFRIFNPITQGEKFDKDGEYI 414 Query: 426 RHWLPELNNVPTQYIHAPHSWLDK------NDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479 R W+PEL ++P +YIH P + + YPLP+VDHK A L Y + K+ Sbjct: 415 RKWVPELRDMPNKYIHKPWEAPEHILQKANIQIGHTYPLPVVDHKAARERALCAYKSMKE 474 >gi|85711625|ref|ZP_01042682.1| Deoxyribodipyrimidine photolyase [Idiomarina baltica OS145] gi|85694485|gb|EAQ32426.1| Deoxyribodipyrimidine photolyase [Idiomarina baltica OS145] Length = 468 Score = 417 bits (1072), Expect = e-114, Method: Composition-based stats. Identities = 177/471 (37%), Positives = 259/471 (54%), Gaps = 9/471 (1%) Query: 10 HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69 +VW R+DLR DN AL AAC N V A+F+ W+ H + + + L + + Sbjct: 3 AVVWFRSDLRTVDNPALDAACLNHK-HVYALFLVPQRTWQAHDWAPIKVDLWWRHLAEFK 61 Query: 70 KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH 129 + L+ KGI F F S + +C + +V ++ NR+Y ++E+ RDK + Sbjct: 62 QELADKGIGFSIFTIDRFSQSGATIADFCEKHKVNTVYANREYPLDEIERDKQARACFEQ 121 Query: 130 R-VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQA-DLRSLPVPAIRLTGP 187 R + + FD ++L+PP ++ YKV+TPF +A + + D Sbjct: 122 RDIEFQLFDGNLLVPPEAVETKQGGYYKVFTPFNRAWRTEVAKISDWTPESWRVENTVAS 181 Query: 188 VTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSP 247 T + +P+G Q + L +F + +V Y +RD P++ GTS +S Sbjct: 182 STELPQCPLE----RKNSQTYPVGRQAIMGKLGQFIEHQVDEYKARRDEPSVDGTSMMSA 237 Query: 248 YLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPF 307 Y +G ++P+ L + + GA +WL E+ WREFY+HLM P + G+ + Sbjct: 238 YFEMGAIAPKTVARALSSLSPEFPYGLEPGADTWLTEVAWREFYQHLMFHEPRLSRGENY 297 Query: 308 IPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLV 367 T+ + W QAW G TGFPI+DA MRQLN GWMHNRLRMI A+FLVKDLL+ Sbjct: 298 QTETQGLPWRDAEEDFQAWCDGRTGFPIVDAGMRQLNETGWMHNRLRMIVANFLVKDLLI 357 Query: 368 DWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRH 427 DWR GE+YFM L+DG +NNGGWQW+AS G D+VPYFR+FNP Q ++FDP G +IR Sbjct: 358 DWRKGEQYFMRNLVDGSFPANNGGWQWSASVGTDAVPYFRVFNPVRQSEKFDPDGIYIRT 417 Query: 428 WLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478 W+ EL +VP+++IH PHS+L ++ Y PIVDH +A L+ + K Sbjct: 418 WIKELADVPSKHIHWPHSYLKQHK--TGYVSPIVDHSEARERFLSTFKQVK 466 >gi|171913802|ref|ZP_02929272.1| Deoxyribodipyrimidine photo-lyase [Verrucomicrobium spinosum DSM 4136] Length = 475 Score = 417 bits (1072), Expect = e-114, Method: Composition-based stats. Identities = 164/481 (34%), Positives = 247/481 (51%), Gaps = 13/481 (2%) Query: 5 TAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYAS 64 T V L W R DLR+TDN AL+AA + +VI ++ + + + HF+ + Sbjct: 3 TKTPVSLHWFRRDLRLTDNTALHAA-QTASTQVIPFYVLSSWKKAHAWTGPNRQHFLCGN 61 Query: 65 LLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLE 124 L + K+L G + ++ + T L+ NR + + + Sbjct: 62 LESLAKNLEAIGSRLIIRSGET----VSEIERLIRETGATALYTNRDPDPYGQTIETHVI 117 Query: 125 KRLQH-RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIR 183 V + D+VL P +L Y+V+TP+ K + L + Sbjct: 118 ALCNKLGVAFHTCKDAVLHQPQEVLTGNGGPYRVFTPYSKNWLSLPKAQPLSKVRTLGDA 177 Query: 184 LTGPVTPSNIPRFFDYPFQAIDPMFP-IGEQNALHILRKFCKE-KVYYYVEQRDIPAIQG 241 + + +P + P GE+ A ++ F ++ Y E R+ P++ G Sbjct: 178 PSPKIKSLPLPTVVHWHLPEPTATLPTPGEKAARDRMKTFVDSVRLPRYEETRNFPSVPG 237 Query: 242 TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKP--KSGAFSWLNELIWREFYRHLMAFYP 299 TSQLSP L G++S R+ ++R ++ +P +SG +++ EL WREFY ++ FYP Sbjct: 238 TSQLSPDLRYGLISIRELYHRCQQALAQAGGQPAAQSGINTYIKELAWREFYMAVLHFYP 297 Query: 300 SVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITAS 359 V + F P + W++D L AWK+G TGFP++DA MRQL GWMHNR+RMI + Sbjct: 298 EV-LETDFNPDLRGVSWHQDPAGLAAWKEGRTGFPLVDAGMRQLLATGWMHNRVRMIVSM 356 Query: 360 FLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFD 419 FL KDL V W GE +FM L+DG++ASNNGGWQW+A TG D+ P+FRI NP Q KR+D Sbjct: 357 FLTKDLHVHWMEGESHFMQLLVDGEIASNNGGWQWSAGTGADAAPWFRIQNPWTQTKRYD 416 Query: 420 PQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479 P+G +I+ W+PEL +VP + AP + L+ YPLPIVDH TL ++ A K Sbjct: 417 PEGKYIKTWVPELKDVPAEMFFAPPTNGLP--LAKGYPLPIVDHATERDRTLQRFKVATK 474 Query: 480 Q 480 + Sbjct: 475 R 475 >gi|307543860|ref|YP_003896339.1| deoxyribodipyrimidine photolyase [Halomonas elongata DSM 2581] gi|307215884|emb|CBV41154.1| deoxyribodipyrimidine photolyase [Halomonas elongata DSM 2581] Length = 502 Score = 417 bits (1071), Expect = e-114, Method: Composition-based stats. Identities = 188/471 (39%), Positives = 265/471 (56%), Gaps = 7/471 (1%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M L+W R+DLR+ DN AL AA S+ V+AVF+ + QW +HG A + F + +L Sbjct: 1 MPPSLIWFRSDLRVHDNTALAAAA--SEGPVVAVFLRSTAQWLEHGHGANKLDFWHRGVL 58 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 ++ +L GI + +F + + L + + +L +N +Y +NE RRD + Sbjct: 59 ALRAALHGLGIPLLHRDIDDFAAAPDALLALARETGARRLHFNHEYPLNERRRDASVVDA 118 Query: 127 LQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185 + + D V PG + Y ++TPF KA + + L +PAI+ + Sbjct: 119 FEAAGLSAVGHHDGVAFAPGELRTGKGDFYGIFTPFAKAWHRQVTPERLALRDLPAIQAS 178 Query: 186 GPVTPSNIPRFFDYPFQAIDPM-FPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244 PV P P +P GE A L +F + + +Y E+RD PA GTS Sbjct: 179 LPVASDPEPELPALDTAPAAPENWPAGENAAADRLERFLRWRARHYAERRDFPAESGTSS 238 Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304 LSPYL++G++S RQC E L + +G +W+NELIWREFY+H++ +P VC Sbjct: 239 LSPYLALGMISHRQCLQAALAENDGGLAEGDAGLTAWVNELIWREFYQHVVVGFPEVCRH 298 Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364 + F TE + W D+ +AW +G TG+P++DAAMRQL GWMHNRLRM+TA FL K Sbjct: 299 RAFQAHTEALPWRDDTSAWRAWTEGRTGYPLVDAAMRQLRATGWMHNRLRMVTAMFLAKH 358 Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424 LL+DWR GE +F+ L+DG+ A+NNGGWQWAASTG D+VPYFRIFNP Q +RFDP G F Sbjct: 359 LLIDWRHGERFFLHHLVDGEFAANNGGWQWAASTGTDAVPYFRIFNPITQSRRFDPDGRF 418 Query: 425 IRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYY 475 I WLPEL ++P + H P YP+PIV+H+ A L + Sbjct: 419 IAEWLPELADLPAKERHDPSPEQRAARR---YPMPIVEHRAARARALEAFK 466 >gi|332306448|ref|YP_004434299.1| Deoxyribodipyrimidine photo-lyase [Glaciecola agarilytica 4H-3-7+YE-5] gi|332173777|gb|AEE23031.1| Deoxyribodipyrimidine photo-lyase [Glaciecola agarilytica 4H-3-7+YE-5] Length = 482 Score = 417 bits (1071), Expect = e-114, Method: Composition-based stats. Identities = 183/476 (38%), Positives = 270/476 (56%), Gaps = 13/476 (2%) Query: 10 HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69 LVWLR DLR + N A+ A + ++ V AV+ T +QW ++ ++ + IY L+ +Q Sbjct: 3 ALVWLRTDLRSSWNSAIDYAVASHES-VSAVYFVTQKQWSKYNMANSKIALIYQRLVSLQ 61 Query: 70 KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH 129 + L ++ I Q ++ E L C++ VT ++ N +YE +E +RD ++ L Sbjct: 62 EELKERNINLQVMDGGIYETLPEKLTELCVKNHVTHVYCNAEYEWDERQRDASVKNSLNK 121 Query: 130 -RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188 V +F D+ L+ P I+N + YKV+TP+ K ++ ++ + TG Sbjct: 122 MDVAFATFHDTCLVKPTEIMNLKNEPYKVFTPYFKRWLEMTLRQLPGVPEKCSANDTGLK 181 Query: 189 TPSNIPRFFDYPFQAID---------PMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAI 239 + ++ + + P +P + F E Y + RDIP+I Sbjct: 182 HSEDDNQYIESLISKTNRQGSDGSDAPSWPATASEITKKMNGFIVEFAPDYPKNRDIPSI 241 Query: 240 QGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYP 299 +GTS++SPYLSIG LSPRQC + +E+ + + P+ GA++W+ E+ WR+FYR++M +P Sbjct: 242 EGTSKISPYLSIGALSPRQCLFHVLQEYGEDALSPEHGAYTWVKEIAWRDFYRYVMFHFP 301 Query: 300 SVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITAS 359 V G PF + +W + AWK G TG+PI+DAAM L GWMHNRLRMI AS Sbjct: 302 HVSRGLPFQKHYQYFKWENNQQHFDAWKAGETGYPIVDAAMIALKQTGWMHNRLRMIVAS 361 Query: 360 FLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFD 419 F K LL+ W+ E+YFMSQL+DGD ASNNGGWQW+AS G D+ PYFRIFNPT Q +RFD Sbjct: 362 FYCKHLLLPWKWAEDYFMSQLIDGDYASNNGGWQWSASVGTDAAPYFRIFNPTTQSERFD 421 Query: 420 PQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYY 475 PQG FI+ WLP+L ++ + +H P D L Y LPIV+HK + T Q+ Sbjct: 422 PQGEFIKTWLPQLAHLSPKQVHEPSKHCDVQRLG--YALPIVEHKASVARTKAQFK 475 >gi|152981216|ref|YP_001354641.1| deoxyribodipyrimidine photo-lyase [Janthinobacterium sp. Marseille] gi|151281293|gb|ABR89703.1| deoxyribodipyrimidine photo-lyase [Janthinobacterium sp. Marseille] Length = 495 Score = 417 bits (1071), Expect = e-114, Method: Composition-based stats. Identities = 167/490 (34%), Positives = 249/490 (50%), Gaps = 29/490 (5%) Query: 10 HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69 LVW R DLR D+ AL+ A +V FI + + R+ FI+ASL ++ Sbjct: 7 TLVWFRRDLRSFDHAALHHALRQG-RQVYCAFIFDRAILDELPSTDRRVEFIHASLQELD 65 Query: 70 KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH 129 +L G + + + + V +F N YE + RD + L Sbjct: 66 TALRALGGGLIVRHA----RAEQAIPQLAAELGVDAVFCNHDYEPQAIARDGAVAAALAT 121 Query: 130 RV-ICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLV----QADLRSLPVPAIRL 184 +++ D V+ +L+ + + + V+TP++ A ++ L AD+ + + +R Sbjct: 122 DGRKLQTYKDHVIFEKDEVLSQSGKPFSVFTPYKNAWLKKLHTELAPADMPAYEIDTLRA 181 Query: 185 TGPVTPSNI---PRFFDYPFQAIDPM---FPIGEQNALHILRKFCKEKVYYYVEQRDIPA 238 P+N+ P + F+ + P G Q + F +++ Y RD PA Sbjct: 182 HFAPLPANLSGIPALSELGFEKTNLTELNIPTGMQGGQALFDDFI-DRMPDYDSTRDFPA 240 Query: 239 IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFY 298 ++G S LS +L G +S R R + + +GA WL+EL+WR+FY ++ + Sbjct: 241 VKGPSYLSVHLRFGTVSIRALVRRALDAMR--IGAGGTGAAVWLSELVWRDFYFMILYQH 298 Query: 299 PSVCMGKPFIPWTEKIEWNK---DSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRM 355 P V + F P + I W L QAW G TG+P++DAAM QLN G+MHNRLRM Sbjct: 299 PHV-RERAFKPDYDAIIWENGPHAEELFQAWCDGRTGYPLVDAAMAQLNQTGYMHNRLRM 357 Query: 356 ITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQG 415 +TASFL+KDL +DWR GE YF +L D DLA+NNGGWQWA+S+G D+ PYFRIFNP Q Sbjct: 358 VTASFLIKDLGIDWRWGERYFAEKLNDFDLAANNGGWQWASSSGCDAQPYFRIFNPLTQS 417 Query: 416 KRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKN------DLSLNYPLPIVDHKKACHH 469 ++FDP G FIR +LP+L + + IHAP L +YP P++ H +A Sbjct: 418 EKFDPDGKFIRRYLPQLGKLSGKQIHAPWRVPALELQMAGITLGRDYPHPLLQHDEARAR 477 Query: 470 TLNQYYAAKK 479 TL +Y KK Sbjct: 478 TLLRYAVVKK 487 >gi|253999882|ref|YP_003051945.1| Deoxyribodipyrimidine photo-lyase [Methylovorus sp. SIP3-4] gi|253986561|gb|ACT51418.1| Deoxyribodipyrimidine photo-lyase [Methylovorus sp. SIP3-4] Length = 481 Score = 417 bits (1071), Expect = e-114, Method: Composition-based stats. Identities = 171/485 (35%), Positives = 253/485 (52%), Gaps = 25/485 (5%) Query: 5 TAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQ-HGISARQSHFIYA 63 T S LVW R DLR D+ ALY A + V F+ + + R+ FI+ Sbjct: 2 TTSSYALVWFRRDLRDFDHAALYHALK-AHTHVYCAFVFDTDILDALPDRADRRVEFIWE 60 Query: 64 SLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLL 123 S+ ++Q++L +G + E + + ++ + ++ NR YE + V RD + Sbjct: 61 SVRELQQALRSQGGDLIVLHA----CAKEAIPALAVKLKANAVYSNRDYEPDAVARDAKV 116 Query: 124 EKRLQ-HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAI 182 +L H + + D V+ +L A + Y V+TP++ A ++ L L++ PV Sbjct: 117 AAKLASHDIAFHQYKDQVIFEQDEVLTQAGKPYGVFTPYKNAHLKKLNDFYLQAYPVDRY 176 Query: 183 RL-TGPVTPSNIPRFFDYPFQAIDPM---FPIGEQNALHILRKFCKEKVYYYVEQRDIPA 238 R + +P F + P G + +F +E++ Y + RD PA Sbjct: 177 RQHLAASDKTEMPTLESMGFARTNLAEMKLPTGMSGGQQLFAEF-QERMARYKDARDFPA 235 Query: 239 IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFY 298 ++G S LS +L G +S R ++ +GA +WLNELIWR+FY ++ + Sbjct: 236 VKGPSYLSVHLRFGTVSIRHLARTAWQQ-------HNAGAETWLNELIWRDFYFQVLHHH 288 Query: 299 PSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITA 358 P V G+ F + I + L AW +G TG+P++DAAMRQLN G+MHNRLRM+TA Sbjct: 289 PQVAAGRAFKLEFDAIAFPNQQALFDAWCEGRTGYPLVDAAMRQLNQTGYMHNRLRMVTA 348 Query: 359 SFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRF 418 SFLVKDLL+DWR GE YF +L+D DLA+NNGGWQWAASTG D+ P+FRIFNP Q ++F Sbjct: 349 SFLVKDLLIDWRWGERYFAERLIDFDLAANNGGWQWAASTGCDAQPWFRIFNPVTQSEKF 408 Query: 419 DPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND------LSLNYPLPIVDHKKACHHTLN 472 D QG FIR ++PEL + IHAP + +YP P+V+H L+ Sbjct: 409 DAQGKFIRKYVPELAACHEKEIHAPWLMPPLRQQSLGLVIGKDYPAPVVEHSVQREKALS 468 Query: 473 QYYAA 477 Y A Sbjct: 469 LYKNA 473 >gi|323137318|ref|ZP_08072396.1| DNA photolyase, FAD-binding [Methylocystis sp. ATCC 49242] gi|322397305|gb|EFX99828.1| DNA photolyase, FAD-binding [Methylocystis sp. ATCC 49242] Length = 472 Score = 416 bits (1070), Expect = e-114, Method: Composition-based stats. Identities = 164/486 (33%), Positives = 257/486 (52%), Gaps = 32/486 (6%) Query: 8 SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67 + +VW RNDLR+ DN AL AA S A +IA+++ E + + + +++ SL Sbjct: 3 APAVVWFRNDLRLADNPALTAAAR-SGAPIIALYVLDDESAGEWRMGSASRWWLHHSLTA 61 Query: 68 VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127 + L++ G+ + L++ +++NR YE +RRD ++ +L Sbjct: 62 LAHDLARLGVTLTLRRGRAEF----VLENIVADAGAGAVYWNRLYEPWAMRRDSEIKSQL 117 Query: 128 QHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 + R + +SF+ S+L PG + N + ++V+TPF +A + A+ P+PA + Sbjct: 118 RARGVMVESFNGSLLFEPGGLRNKQGEPFRVFTPFWRACLA----AEAPDAPLPAPKKLT 173 Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIG--------EQNALHILRKFCKEKVYYYVEQRDIPA 238 P D+ P + G E AL L +F K++V Y RD A Sbjct: 174 AAPPPASDALADWRLLPTKPDWAGGLRETWRAGEHAALERLAEFAKKRVRDYKIDRDFMA 233 Query: 239 IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFY 298 +G S++SP+L G +SPR+ W + E D ++L E+ WREF HL+ Sbjct: 234 REGVSRMSPHLHFGEVSPRRIWAEITEAAGDAGA-------AYLREIGWREFCHHLLVAN 286 Query: 299 PSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITA 358 P + + W +D+ L+AW++G TG+P++DAAMR+L G MHNR RM+ A Sbjct: 287 PQMPE-RALDERFRDFPWREDAAALEAWRRGQTGYPLVDAAMRELWITGNMHNRARMVAA 345 Query: 359 SFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRF 418 SFLVK LL+ W+ GE +F L+D DLA+N+GGWQW A G D+ PYFR+FNP +QG++F Sbjct: 346 SFLVKHLLIPWQEGERWFWDTLVDADLANNSGGWQWVAGCGADAAPYFRVFNPVLQGEKF 405 Query: 419 DPQGTFIRHWLPELNNVPTQYIHAPHSWLDK------NDLSLNYPLPIVDHKKACHHTLN 472 DP+G ++R ++PEL + ++IH P ++ L YP PIVDH KA L Sbjct: 406 DPEGDYLRRYVPELARLDARHIHCPWEAPEEVLRAAGVRLGETYPRPIVDHAKARDRALK 465 Query: 473 QYYAAK 478 + A + Sbjct: 466 AFEATR 471 >gi|330916654|ref|XP_003297506.1| hypothetical protein PTT_07932 [Pyrenophora teres f. teres 0-1] gi|311329779|gb|EFQ94400.1| hypothetical protein PTT_07932 [Pyrenophora teres f. teres 0-1] Length = 632 Score = 416 bits (1070), Expect = e-114, Method: Composition-based stats. Identities = 169/488 (34%), Positives = 259/488 (53%), Gaps = 22/488 (4%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAK---VIAVFIATPEQWRQHGISARQSHFIYASLLQ 67 + W + DLRI DN L A + + +I +++ +P+ W H +S + F S+ Sbjct: 138 VHWFKRDLRIRDNTGLSKAAELAKERGVGLIGIWLMSPQDWEAHLVSPPKCDFELRSVEL 197 Query: 68 VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD-KLLEKR 126 +QK LS+ I + + L + V +F N +YE +E+RR+ +L+ Sbjct: 198 LQKELSELDIPLYIETIPERKNVTKRLVELAQEWNVKNVFCNLEYEPDELRREERLVRMM 257 Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 L+ + + D ++PPGS+ A + Y VY+P+ +A I +L + P Sbjct: 258 LEKGIGFDPYHDDCVVPPGSLKTGAGKQYAVYSPWCRAWIAHLHAHPDLLIERPMPGRNP 317 Query: 187 PVTPSNIPRFFDYPF--------------QAIDPMFPIGEQNALHILRKFCKEKVYYYVE 232 + F++ + ++P GE A+ L +F EK+ Y + Sbjct: 318 TNFRDKFSKLFEFSVPSLPECKALTPEEKERFSRLWPAGEAAAVDRLERFLVEKIVKYKD 377 Query: 233 QRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKE-EFVDLLIKPKSGAFSWLNELIWREFY 291 R+ PA+ T ++S + + G L+ R ++ L K G +W+ E+ WR+FY Sbjct: 378 TRNFPALNSTGRVSVHHAAGTLAARTSIRMARDINSAQKLDGGKDGVKTWIGEVAWRDFY 437 Query: 292 RHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHN 351 RH++ +P VCM KPF I W ++ AW +G TG+PI+DAAMR LN G+MHN Sbjct: 438 RHVLVNWPYVCMNKPFKYEYTNIHWEYNTAHFTAWTRGLTGYPIVDAAMRCLNHTGYMHN 497 Query: 352 RLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNP 411 RLRMITASFL K LL+DWR+GE+YF++ L+DGD ASNNGGW ++ASTG D PYFRIFNP Sbjct: 498 RLRMITASFLSKHLLLDWRLGEQYFLTHLIDGDFASNNGGWGFSASTGVDPQPYFRIFNP 557 Query: 412 TIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKN---DLSLNYPLPIVDHKKACH 468 IQ ++FD G FIR W+ EL+ V + +H P++ K + YP P+V+H+ A Sbjct: 558 WIQSEKFDADGEFIRMWVEELSGVQGKEVHNPYAAGGKAAEVARRMGYPEPVVEHRVARE 617 Query: 469 HTLNQYYA 476 L +Y Sbjct: 618 RCLKRYKE 625 >gi|169595566|ref|XP_001791207.1| hypothetical protein SNOG_00523 [Phaeosphaeria nodorum SN15] gi|111070898|gb|EAT92018.1| hypothetical protein SNOG_00523 [Phaeosphaeria nodorum SN15] Length = 632 Score = 416 bits (1070), Expect = e-114, Method: Composition-based stats. Identities = 169/487 (34%), Positives = 254/487 (52%), Gaps = 21/487 (4%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAK---VIAVFIATPEQWRQHGISARQSHFIYASLLQ 67 + W + DLRI DN L A + K +I V+I +P+ W H +S + F S+ Sbjct: 139 IHWFKRDLRIRDNTGLSEAAALAKEKGIGLIGVWIMSPQDWVAHLVSPPKCDFELRSVEL 198 Query: 68 VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKL-LEKR 126 ++K L + I + + L + V +F N +YE +E+RR+ +E Sbjct: 199 MKKELDELDIPLHIETVPKRRNVAKRLLELAQEWNVKNIFCNLEYEPDELRREARLVELM 258 Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQAD--LRSLPVPAIRL 184 L++ + D ++PPG++ + Y VY+P+ ++ + +L L P+P L Sbjct: 259 LENGIGFNPQHDDCVVPPGALKTGGGKQYAVYSPWFRSWVAHLHAHPHLLNERPMPERNL 318 Query: 185 TG------------PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVE 232 G D ++P GE A+ L +F EK+ Y Sbjct: 319 AGFREKHAGLFDAKIPDLPESKSLTDEEKTRFHALWPAGEAAAIDRLERFASEKIGRYQA 378 Query: 233 QRDIPAIQGTSQLSPYLSIGVLSPRQ-CWNRLKEEFVDLLIKPKSGAFSWLNELIWREFY 291 R+ PA+ T ++S + + G L+ R L G +W++E+ WR+FY Sbjct: 379 TRNFPALNSTGRVSAHHAAGTLAARTSVRMARSANTSKKLDGGSDGIKTWISEVAWRDFY 438 Query: 292 RHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHN 351 RH++ +P VCM KPF IEW + AWK+G TG+PI+DAAMR L +MHN Sbjct: 439 RHVLVHWPYVCMNKPFKFEYTNIEWEYNDAHFTAWKEGRTGYPIVDAAMRCLKHTAYMHN 498 Query: 352 RLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNP 411 R RMITASFL K LL+DWR+GE+YFM+ L+DGD ASNNGGW ++ASTG D PYFRIFNP Sbjct: 499 RNRMITASFLAKHLLLDWRLGEQYFMTHLIDGDFASNNGGWGFSASTGVDPQPYFRIFNP 558 Query: 412 TIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSL--NYPLPIVDHKKACHH 469 +Q ++FD +G FIR W+ EL+ V + +H P++ +++ YP P+V+HK A Sbjct: 559 WLQSEKFDEEGDFIRLWVEELSGVQGKAVHNPYADKKAAEVARKNGYPKPVVEHKFARER 618 Query: 470 TLNQYYA 476 L +Y A Sbjct: 619 CLARYKA 625 >gi|309791051|ref|ZP_07685587.1| Deoxyribodipyrimidine photo-lyase [Oscillochloris trichoides DG6] gi|308226906|gb|EFO80598.1| Deoxyribodipyrimidine photo-lyase [Oscillochloris trichoides DG6] Length = 459 Score = 416 bits (1070), Expect = e-114, Method: Composition-based stats. Identities = 186/473 (39%), Positives = 247/473 (52%), Gaps = 23/473 (4%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 + + W R DLR++DN AL AA S V+ V+I P S +S F+ A L + Sbjct: 1 MIIHWFRRDLRLSDNPALSAAALASGGHVLPVYILDPTLLNGLWASPARSAFLIAGLRAL 60 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128 L G+ + + L + + + +NR Y RRD+ +E L Sbjct: 61 DAQLQHHGLRLIVRHG----EPVATLLHLVAETGASAVTWNRDYSPYSRRRDQAIEAALH 116 Query: 129 HRV-ICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187 + D + PP IL Y VYTP+ + L ADLR + P ++ Sbjct: 117 AAGCAVQHTHDVAICPPDQILTKNATPYSVYTPYARQWRTWLAHADLRPVAAPILQPCRD 176 Query: 188 VTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSP 247 + S+ A P+ P GE A IL +F + + Y QRD+PA+ GTS+LSP Sbjct: 177 LPVSHAIP----DLLAPHPLPPAGELAAQTILDEFTRTSLRTYATQRDLPAVPGTSRLSP 232 Query: 248 YLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPF 307 YL G+++ RQC + P GA +W+ EL WR+FY ++ +P V G F Sbjct: 233 YLRFGMIAVRQCLAVAQAH-------PGPGADTWIAELAWRDFYIQVLFHHPHVLRG-AF 284 Query: 308 IPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLV 367 P + + W D L AW G+TG+P++DAAMRQL GWMHNR RMI ASFL KDLL+ Sbjct: 285 KPQYDDLAWENDPDLFAAWCAGHTGYPMVDAAMRQLQQEGWMHNRARMIVASFLTKDLLI 344 Query: 368 DWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRH 427 DWR GE YFM LLDGD A+NNGGWQWAASTG D+ PYFRIFNPT QG++FDP G +IR Sbjct: 345 DWRWGERYFMQMLLDGDPAANNGGWQWAASTGTDAQPYFRIFNPTCQGQKFDPHGDYIRR 404 Query: 428 WLPELNNVPTQYIHAPHSWLDKND------LSLNYPLPIVDHKKACHHTLNQY 474 +LPEL VP IH PH + +YP P+VDH + L Y Sbjct: 405 YLPELAGVPNHKIHTPHLLSASEQMRAGVRIGHDYPAPLVDHAQRRERALGIY 457 >gi|328860259|gb|EGG09365.1| hypothetical protein MELLADRAFT_34389 [Melampsora larici-populina 98AG31] Length = 578 Score = 416 bits (1070), Expect = e-114, Method: Composition-based stats. Identities = 173/496 (34%), Positives = 256/496 (51%), Gaps = 24/496 (4%) Query: 4 TTAMSVHLVWLR-NDLRITDNKALYAACHNSD---AKVIAVFIATPEQWRQHGISARQSH 59 + + W+R DLR+ DN+AL AA + A +I + I +P + H SAR+ Sbjct: 61 NDKKPIVVYWMRMRDLRLADNRALSAASQVAQTLQAHLIVLHIFSPGDYHAHDRSARRID 120 Query: 60 FIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRR 119 F+ +L+ ++ L + I + + VT++F N ++E++E+RR Sbjct: 121 FVLRNLIDLRLRLRELNIPLYTISIEKRKTIPKRVVELLNAWEVTRIFANIEHEVDELRR 180 Query: 120 DKLLEKRL-QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKAL---IQNLVQADLR 175 D L + D+ L+ PG +L + Y V++P++K I + + L Sbjct: 181 DIELINLCHPQGIKVDLSHDTCLVEPGKVLTKENKPYSVFSPWQKNWANIINSDLSNHLD 240 Query: 176 SLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKV-------- 227 + P + + F+ + P F + ++ A I + + Sbjct: 241 AAPEIKGNDPSAMDDDRLQSLFEVEIPSFIPGFELPDEEAKRIRDYWEADTKPKSTPTIL 300 Query: 228 YYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPK-------SGAFS 280 Y R+ P + GTS+LS YL+ G++SPR C E+ K +G Sbjct: 301 EEYSTLRNRPDLPGTSRLSAYLAAGIISPRTCVRITLEKNGKQFKNQKLQVDQRDTGIGM 360 Query: 281 WLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAM 340 W +EL WR+FY+H++A +P V MG+ F + + W KD L+AWK G TGFP IDA M Sbjct: 361 WQSELGWRDFYQHVLAAWPRVSMGQNFNQKFDPMVWEKDESKLEAWKLGKTGFPFIDACM 420 Query: 341 RQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGN 400 RQL +G+MHNR RM A FL KDLL+DWRIGE++FM L+DGDL SNNGGWQW++STG Sbjct: 421 RQLLEMGYMHNRGRMCVAMFLTKDLLIDWRIGEKWFMQHLVDGDLGSNNGGWQWSSSTGC 480 Query: 401 DSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDL-SLNYPLP 459 DS PYFRIF P Q ++ DP G FIR ++PELN++ + IH P+ L + L YP P Sbjct: 481 DSQPYFRIFAPLSQSEKSDPNGDFIRKYVPELNSLSGKAIHDPYKALSPDKFKKLGYPKP 540 Query: 460 IVDHKKACHHTLNQYY 475 IVDH L +Y Sbjct: 541 IVDHSVVRKRALVRYK 556 >gi|90419365|ref|ZP_01227275.1| putative deoxyribodipyrimidine photolyase [Aurantimonas manganoxydans SI85-9A1] gi|90336302|gb|EAS50043.1| putative deoxyribodipyrimidine photolyase [Aurantimonas manganoxydans SI85-9A1] Length = 483 Score = 416 bits (1070), Expect = e-114, Method: Composition-based stats. Identities = 158/492 (32%), Positives = 233/492 (47%), Gaps = 24/492 (4%) Query: 1 MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHF 60 M T+ +VWLR+DLR+ DN AL A +S V+ + + E + + Sbjct: 1 MTQTSQSEPIVVWLRDDLRLDDNPALAEAA-DSGRPVVPLVVLDEESDGVRSLGGTHKWW 59 Query: 61 IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120 ++ SL K L+ KG + + ++ ++S T L NR+Y+ D Sbjct: 60 LHHSLQCFGKDLADKGAPLILRRGKASEHVVDIVES----TGATTLLMNRRYDQASRAVD 115 Query: 121 KLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVP 180 +E L V + F ++L P + YKVYTPF +NL + + R P Sbjct: 116 DAVEAALGSDVEVQRFTANILHDPDKVRTKTGGWYKVYTPFW----KNLAEDEPRDPIDP 171 Query: 181 AIRLTGPVTPSNIPRFFDYPFQAIDPMFPIG--------EQNALHILRKFCKEKVYYYVE 232 +L R ++ P + G E A +F E + Y + Sbjct: 172 PDKLASLDDQPRSDRLEEWDLLPTRPDWSGGIAAFWKVGEAAAHERFEEFSDEWLNDYPD 231 Query: 233 QRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYR 292 RD P TS++SP+L G +SP + W+ + P ++ EL+WR+F Sbjct: 232 GRDRPGDDATSRMSPHLRWGEISPYRLWHMAEACANRRKTIPGDALKTFKKELVWRDFNY 291 Query: 293 HLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNR 352 HL+ + + + + W L+AW++G TG+PI+DA MRQL GWMHNR Sbjct: 292 HLLHNFGPLATQN-YNDRFDAFPWRSAKSELRAWQKGLTGYPIVDAGMRQLWECGWMHNR 350 Query: 353 LRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPT 412 +RMI SFL KDLL+DWR GE +F L+DGD+ASN WQW +G D+ PYFR+FNP Sbjct: 351 VRMIVGSFLTKDLLIDWREGERWFWDTLVDGDIASNTAQWQWIGGSGADAQPYFRVFNPV 410 Query: 413 IQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHS------WLDKNDLSLNYPLPIVDHKKA 466 Q +RFD G +IR ++PEL ++P + +HAP +L YP PIVDH A Sbjct: 411 TQSQRFDGDGDYIRRFVPELADLPDKVLHAPWEADADTLAEAGVELGKTYPKPIVDHGTA 470 Query: 467 CHHTLNQYYAAK 478 L+ Y K Sbjct: 471 RKRALDAYGEVK 482 >gi|284054552|ref|ZP_06384762.1| Deoxyribodipyrimidine photo-lyase [Arthrospira platensis str. Paraca] Length = 474 Score = 416 bits (1069), Expect = e-114, Method: Composition-based stats. Identities = 170/476 (35%), Positives = 244/476 (51%), Gaps = 16/476 (3%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 L W R DLRI+DN L AA ++V+ VF PE I+ + ++ L +Q+ Sbjct: 6 LFWHRRDLRISDNWGL-AAARRVTSQVVGVFCLDPEILSGDDIAPVRVAYMLGCLQCLQE 64 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130 + G Q D+ + L + +++NR E +RD+ +E+ L Sbjct: 65 DYQRGGSQLLIIQ----DNPAQGLRKLAVALGAIAIYWNRDVEPLPRQRDRSVEESLTEV 120 Query: 131 VI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAI-----RL 184 I ++F D VL P +I + + YKVYTP+ + IQ + L + + Sbjct: 121 GIKVETFWDQVLHSPEAIFTGSKEPYKVYTPYWRKWIQQPKPEPCQRLKSTGLTEAQEKA 180 Query: 185 TGPVTPSNIPRFFDYPFQAIDP-MFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS 243 +P D F +P + GE A L FC +Y Y E R+ PAI GTS Sbjct: 181 ALEAGAIALPTAKDLGFIWSEPFILEPGETAASDRLEIFCDRAIYEYDEGRNFPAIDGTS 240 Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFV-DLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVC 302 LSP L G + R W + +E + + +W EL WREFY+ + +P++ Sbjct: 241 VLSPALRFGAIGIRTLWQKTQEIMALTRSDEARHHIQTWQQELAWREFYQQALYHFPALA 300 Query: 303 MGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLV 362 G F ++ W+ + QAW QG TG+PI+DAAMRQLN GWMHNR RMI ASFL Sbjct: 301 TG-AFRQPFDRFPWSDNQEHFQAWCQGRTGYPIVDAAMRQLNETGWMHNRCRMIVASFLT 359 Query: 363 KDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQG 422 KDL+++W+ GE+YFM L+DGDLASNNGGWQW++S+G D P RIFNP Q +++DP+ Sbjct: 360 KDLIINWQWGEKYFMQTLIDGDLASNNGGWQWSSSSGMDPKP-LRIFNPASQTQKYDPEA 418 Query: 423 TFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478 +IR WLPEL N+ T ++ + + YP PIVDH + + Y K Sbjct: 419 EYIRQWLPELRNLDTAHLVT-GKISSGDRQACGYPQPIVDHNRQQKLFKSIYSQLK 473 >gi|237654350|ref|YP_002890664.1| deoxyribodipyrimidine photo-lyase [Thauera sp. MZ1T] gi|237625597|gb|ACR02287.1| Deoxyribodipyrimidine photo-lyase [Thauera sp. MZ1T] Length = 484 Score = 416 bits (1069), Expect = e-114, Method: Composition-based stats. Identities = 176/491 (35%), Positives = 256/491 (52%), Gaps = 26/491 (5%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGI-SARQSHFIYASL 65 MS LVW R DLR D+ AL+ A ++ +V F+ + R+ FI+ASL Sbjct: 1 MSSALVWFRRDLRSFDHAALHHALRFAE-RVHCAFVFDTAILDALPARADRRVEFIHASL 59 Query: 66 LQVQKSLSQKGIVFQYH---QCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKL 122 ++ +L + + + + V K+F NR YE + + RD Sbjct: 60 AELDAALDAMARAAGGTGGGLIVRHGRAEDEIPRLAAELGVDKVFANRDYEPDAILRDSR 119 Query: 123 LEKRLQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVP- 180 + +RL I + F D V+ +L + Y V+TP++ A ++ + + + S V Sbjct: 120 VAQRLAEDGIGYEDFKDQVVFERDEVLTQTGKPYSVFTPYKNAWLKAVDDSQVSSHAVEK 179 Query: 181 -AIRLTGPVTPSNIPRFFDYPFQAIDPM---FPIGEQNALHILRKFCKEKVYYYVEQRDI 236 A L +P D F + P+G + F ++ Y RD Sbjct: 180 YAAHLAPKPAGETLPGLADIGFAPTNLAELNMPVGMSGGKRLFDDFAA-RIERYKRARDF 238 Query: 237 PAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMA 296 PA++G S LS +L G +S RQ + + GA +WL+ELIWR+FY ++ Sbjct: 239 PAVKGVSYLSTHLRFGTVSIRQLAAHARA-------RGGEGAETWLSELIWRDFYHQILW 291 Query: 297 FYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMI 356 +P V + + F P + ++W+ L AW + TG+PI+DAAMRQL+ GWMHNRLRMI Sbjct: 292 HHPQV-VDRAFRPEYDAVQWDDAPELFAAWCEARTGYPIVDAAMRQLDQTGWMHNRLRMI 350 Query: 357 TASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGK 416 ASFL KDL VDWR+GE YF +L D DLA+NNGGWQWAASTG D+ P+FRIFNP Q + Sbjct: 351 VASFLTKDLGVDWRLGERYFAIRLNDYDLAANNGGWQWAASTGCDAQPWFRIFNPVTQSE 410 Query: 417 RFDPQGTFIRHWLPELNNVPTQYIHAPHSW------LDKNDLSLNYPLPIVDHKKACHHT 470 +FDP+G FIR +LPEL VP ++IHAP + + + ++YP PIVDH A T Sbjct: 411 KFDPEGRFIRRYLPELARVPDKFIHAPWTMGGIDQTACRTKIGVDYPGPIVDHAAARERT 470 Query: 471 LNQYYAAKKQS 481 L ++ K + Sbjct: 471 LQRFGVVKNDA 481 >gi|291570180|dbj|BAI92452.1| deoxyribopyrimidine photolyase [Arthrospira platensis NIES-39] Length = 474 Score = 416 bits (1069), Expect = e-114, Method: Composition-based stats. Identities = 169/476 (35%), Positives = 245/476 (51%), Gaps = 16/476 (3%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 L W R DLRI+DN L AA ++V+ VF PE I+ + ++ L +Q+ Sbjct: 6 LFWHRRDLRISDNWGL-AAARRVTSQVVGVFCLDPEILSGDDIAPVRVAYMLGCLQCLQE 64 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130 + G Q D+ + L + +++N+ E +RD+ +E+ L Sbjct: 65 DYQRGGSQLLIIQ----DNPAQGLRKLAVALGAIAVYWNQDVEPLPRQRDRSVEESLTEV 120 Query: 131 VI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAI-----RL 184 I ++F D VL P +I + + YKVYTP+ + IQ + L + + Sbjct: 121 GIKVETFWDQVLHSPEAIFTGSKEPYKVYTPYWRKWIQQPKPEPCQRLKSTGLTEAQEKA 180 Query: 185 TGPVTPSNIPRFFDYPFQAIDP-MFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS 243 +P D F +P + GE A L FC +Y Y E R+ PAI GTS Sbjct: 181 ALEAGAIALPTAKDLGFIWSEPFILEPGETAASDRLEIFCDRAIYEYDEGRNFPAIDGTS 240 Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFV-DLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVC 302 LSP L G + R W + +E + + +W EL WREFY+ + +P++ Sbjct: 241 VLSPALRFGAIGIRTLWQKTQEIIALTRSDEARHHIQTWQQELAWREFYQQALYHFPALA 300 Query: 303 MGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLV 362 +G F ++ W+ + QAW QG TG+PI+DAAMRQLN GWMHNR RMI ASFL Sbjct: 301 IG-AFRQPFDRFPWSDNQEHFQAWCQGRTGYPIVDAAMRQLNQTGWMHNRCRMIVASFLT 359 Query: 363 KDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQG 422 KDL+++W+ GE+YFM L+DGDLASNNGGWQW++S+G D P RIFNP Q +++DP+ Sbjct: 360 KDLIINWQWGEKYFMQTLIDGDLASNNGGWQWSSSSGMDPKP-LRIFNPASQTQKYDPEA 418 Query: 423 TFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478 +IR WLPEL N+ T ++ + + YP PIVDH + + Y K Sbjct: 419 EYIRQWLPELRNLDTAHLVT-GKISSGDRQACGYPQPIVDHNRQQKLFKSIYSQLK 473 >gi|313624820|gb|EFR94752.1| deoxyribodipyrimidine photo-lyase [Listeria innocua FSL J1-023] Length = 467 Score = 416 bits (1069), Expect = e-114, Method: Composition-based stats. Identities = 178/481 (37%), Positives = 252/481 (52%), Gaps = 27/481 (5%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 ++W R DLR+ DNKALY A D +I +F PEQ+ + + +AS+ Sbjct: 2 TSVMWFRRDLRVNDNKALYHAXXEED--LILLFQVNPEQFIK---GSPSHQAFFASVAHF 56 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQ-RVTKLFYNRQYEINEVRRDKLLEKRL 127 Q+ L++ H F + IE L + K+F+NR RD+ + Sbjct: 57 QQELNKN-----THLQIMFGEPIELLKQLKEKIPTWDKVFFNRDETGYGASRDEAAQAFF 111 Query: 128 QHR-VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 + S+ DS L + A + YK++TP+ K + + + L+ P Sbjct: 112 ADNEITVHSYHDSYLHSAEEVKKSATEYYKIFTPYYKKWREEIKEMPLKVTLKPENIRKE 171 Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246 + P +F + P F GE+ A L F KE + Y + RD+PA+ TS LS Sbjct: 172 SLFPKYEEQFRELIQDL--PAFDSGEKAANTRLANFVKEDLASYDKARDVPALDKTSHLS 229 Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP 306 YL G +S R W L++E + G ++ EL WR+FY + +P +P Sbjct: 230 RYLRTGEISIRTVWQALQKE------EATEGRATFEKELCWRDFYNMIYVSFPKQ-KNEP 282 Query: 307 FIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLL 366 IEW + + W++G TGFP++DAAMRQL GWMHNRLRMITASFL KDLL Sbjct: 283 IQENYRFIEWENNREFFKKWQEGQTGFPLVDAAMRQLKETGWMHNRLRMITASFLTKDLL 342 Query: 367 VDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIR 426 +DWR GE+YF L+D D ASN GGWQWAASTG D+VPYFRIFNPT Q ++FDP GTFIR Sbjct: 343 IDWRFGEKYFQQMLIDYDPASNIGGWQWAASTGTDAVPYFRIFNPTTQSEKFDPDGTFIR 402 Query: 427 HWLPELNNVPTQYIHAPHSWLDKND------LSLNYPLPIVDHKKACHHTLNQYYAAKKQ 480 ++ EL ++P ++IH P + L +YPLPI+DHK+ + +Y +K+ Sbjct: 403 KYVKELRDLPDKFIHQPEKMSETEQQEHGLILGKDYPLPIIDHKERRKLAIARYEFSKEH 462 Query: 481 S 481 S Sbjct: 463 S 463 >gi|300311186|ref|YP_003775278.1| deoxyribodipyrimidine photolyase [Herbaspirillum seropedicae SmR1] gi|300073971|gb|ADJ63370.1| deoxyribodipyrimidine photolyase (photoreactivation) protein [Herbaspirillum seropedicae SmR1] Length = 494 Score = 415 bits (1068), Expect = e-114, Method: Composition-based stats. Identities = 171/496 (34%), Positives = 247/496 (49%), Gaps = 34/496 (6%) Query: 10 HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGI----SARQSHFIYASL 65 LVW R DLR+TD+ ALY A S +V VF+ + R+ F+ AS+ Sbjct: 7 SLVWFRRDLRMTDHAALYYALSQS-RQVWCVFVFDTDILAALKAEGVTQDRRIDFLLASV 65 Query: 66 LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125 ++ ++L G S ++ + + + V ++ N YE V RD + + Sbjct: 66 AELDEALRHAGGGLIVLHGS----AVTQIPALAAELDVQAVYANTDYEPAAVERDAAVAQ 121 Query: 126 RL-QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQAD----LRSLPVP 180 L + S+ D V+ +L + + + V+TP++ A + L AD L+ PV Sbjct: 122 TLAKSGAQLLSYKDQVIFEKDEVLTQSAKPFSVFTPYKNAWMSKLAAADGDFFLKPYPVE 181 Query: 181 AIRLTGPVTP-------SNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQ 233 P + + P + P G A +L +F +++ Y Sbjct: 182 KYLTALASPPGKAGHALPSHRQLGFAPSNLQELKIPTGMSGAQSLLDEFL-DRIGSYGAA 240 Query: 234 RDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRH 293 RD PA++G S LS +L G +S R + +GA WL+EL WR+FY Sbjct: 241 RDFPAVKGPSYLSVHLRFGTISIRTLARAAMQAMHAGQG--AAGAAVWLSELTWRDFYFM 298 Query: 294 LMAFYPSVCMGKPFIPWTEKIEWNKDSH---LLQAWKQGYTGFPIIDAAMRQLNTIGWMH 350 ++ +P V F P + I+W + L AW +G TG+P++DAAM Q+N G+MH Sbjct: 299 ILHHHPRVTRH-AFKPEYDAIQWEQGPQAEALFAAWCEGRTGYPLVDAAMAQINQSGYMH 357 Query: 351 NRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFN 410 NRLRM+ ASFL KDL +DWR GE YF L D DLA+NNGGWQWA+S+G D+ PYFRIFN Sbjct: 358 NRLRMVVASFLTKDLGIDWRWGERYFARHLNDFDLAANNGGWQWASSSGCDAQPYFRIFN 417 Query: 411 PTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND------LSLNYPLPIVDHK 464 P Q ++FDP G FIR +LP+L + + IHAP + L NYP PIVDH Sbjct: 418 PVTQSEKFDPDGKFIRRYLPQLAKLSNKRIHAPWTATPDERMDAGVVLGQNYPRPIVDHA 477 Query: 465 KACHHTLNQYYAAKKQ 480 +A TL +Y KK Sbjct: 478 QARERTLARYAVVKKA 493 >gi|329904543|ref|ZP_08273850.1| Deoxyribodipyrimidine photolyase [Oxalobacteraceae bacterium IMCC9480] gi|327547937|gb|EGF32686.1| Deoxyribodipyrimidine photolyase [Oxalobacteraceae bacterium IMCC9480] Length = 504 Score = 415 bits (1067), Expect = e-114, Method: Composition-based stats. Identities = 175/492 (35%), Positives = 257/492 (52%), Gaps = 28/492 (5%) Query: 10 HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69 L+W R DLR+ D AL+ A S V VFI + + R+ F++ASL ++ Sbjct: 14 SLIWFRRDLRVFDQAALHHALRQSRT-VFCVFIFDSDILQHLPEQDRRIEFLHASLTELH 72 Query: 70 KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ- 128 + L + G ++E + + + V +F N YE + RD + LQ Sbjct: 73 EELVKLGGALIVRHA----RAVEAIPALARELDVEAVFINHDYEPQAIARDAAIATALQQ 128 Query: 129 HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLV----QADLRSLPVPAIRL 184 H + S D V+ +L+ A + + V+TP++ A ++ L +R+ PV + Sbjct: 129 HDIALHSSKDQVVFENDEVLSLAGKPFSVFTPYKNAWLKQLQFNSSDVHVRAYPVEPLAD 188 Query: 185 TGPVTPSN--IPRFFDYPFQAIDPM---FPIGEQNALHILRKFCKEKVYYYVEQRDIPAI 239 V+P +P + F + P G ++ F E++ Y + RD PAI Sbjct: 189 RFAVSPVAHVMPTLAELGFAPTNFAQLKIPTGMSGGQQLVDNFM-ERIDKYKQTRDFPAI 247 Query: 240 QGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYP 299 +G S LS +L G +S R R E + SGA +WL EL+WR+FY ++ +P Sbjct: 248 KGPSYLSVHLRFGTVSIRHLARRACE--AARIAADASGANTWLAELVWRDFYFMILQHHP 305 Query: 300 SVCMGKPFIPWTEKIEWNKDSH---LLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMI 356 V G F P + I+W L QAW G TG+P++DAAM Q+N G+MHNRLRM+ Sbjct: 306 RVVHG-AFKPDYDAIQWETGPAADALFQAWCDGRTGYPLVDAAMAQINQTGYMHNRLRMV 364 Query: 357 TASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGK 416 TA FL+KDL +DWR GE YF +L+D DL++NNGGWQWA+S+G D+ PYFRIFNP Q + Sbjct: 365 TACFLIKDLGIDWRRGEAYFAEKLIDFDLSANNGGWQWASSSGCDAQPYFRIFNPITQSE 424 Query: 417 RFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKN------DLSLNYPLPIVDHKKACHHT 470 +FD G FIR +LP+L + + IHAP +L +NYPLP+V H A T Sbjct: 425 KFDTDGRFIRRYLPQLAQLGNKQIHAPWLLTKMELDHAGVELGVNYPLPVVQHDVARKQT 484 Query: 471 LNQYYAAKKQSL 482 L +Y KK ++ Sbjct: 485 LARYAVVKKVAV 496 >gi|94311677|ref|YP_584887.1| deoxyribodipyrimidine photo-lyase type I [Cupriavidus metallidurans CH34] gi|93355529|gb|ABF09618.1| deoxyribodipyrimidine photolyase, FAD-binding protein [Cupriavidus metallidurans CH34] Length = 513 Score = 414 bits (1065), Expect = e-113, Method: Composition-based stats. Identities = 178/492 (36%), Positives = 248/492 (50%), Gaps = 28/492 (5%) Query: 8 SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGI----SARQSHFIYA 63 + LVWLR DLR DN AL+ A + +V VF+ E + R+ FI Sbjct: 25 TRGLVWLRRDLRTDDNAALHYALKHC-RQVWCVFVFDREILAPLLARGLHADRRVEFILR 83 Query: 64 SLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLL 123 SL ++++L G + + + + V +F N YE RD+ + Sbjct: 84 SLEPLRRALEDSGGGLIVLDGTAR----QAIPRLAAELEVEAVFANHDYEPAANDRDEAV 139 Query: 124 EKRLQHR-VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAI 182 + L + +F D V+ IL + + V+TP++ A ++ + DLR P+ Sbjct: 140 RRTLAADSRVLLTFKDQVIFERDEILTGQGRPFSVFTPYKNAWLRTVRPFDLRPYPIEKH 199 Query: 183 RLTGPVTPS----NIPRFFDYPFQAID---PMFPIGEQNALHILRKFCKEKVYYYVEQRD 235 + T P +P D F A + P G A + +F ++ Y +RD Sbjct: 200 QETLAPVPQRYRGQLPTLADLGFTATNLAGIAMPTGSDGAHALFDEFLS-RIGDYGRRRD 258 Query: 236 IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLM 295 PA++G S LS +L G +S R + + GA WL+ELIWR+FY ++ Sbjct: 259 FPAVRGPSYLSVHLRFGTISIRTLARAAHDTML-RGGAASEGATVWLSELIWRDFYFMIL 317 Query: 296 AFYPSVCMGKPFIPWTEKIEW---NKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNR 352 +P V GK F + + W AW TG+P+IDAAM Q+ G+MHNR Sbjct: 318 HHHPRVAEGKSFHAEYDGLRWIAPATGDRYFAAWCDARTGYPLIDAAMLQIRQSGYMHNR 377 Query: 353 LRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPT 412 LRM+TASFLVKDL VDWR GE+YF QL D DLA+NNGGWQWAASTG D+ PYFRIFNP Sbjct: 378 LRMVTASFLVKDLGVDWRRGEQYFADQLNDFDLAANNGGWQWAASTGCDAQPYFRIFNPV 437 Query: 413 IQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDK------NDLSLNYPLPIVDHKKA 466 Q ++FDPQG FIR +LP L +P +YIHAP + ++ L +YP PIV H A Sbjct: 438 TQSEKFDPQGQFIRRYLPMLAALPDRYIHAPWTAPNEVLRAAGVTLGKDYPRPIVQHDVA 497 Query: 467 CHHTLNQYYAAK 478 TL +Y K Sbjct: 498 RKETLERYGVVK 509 >gi|170727122|ref|YP_001761148.1| deoxyribodipyrimidine photo-lyase [Shewanella woodyi ATCC 51908] gi|169812469|gb|ACA87053.1| Deoxyribodipyrimidine photo-lyase [Shewanella woodyi ATCC 51908] Length = 469 Score = 414 bits (1064), Expect = e-113, Method: Composition-based stats. Identities = 192/473 (40%), Positives = 280/473 (59%), Gaps = 11/473 (2%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 + L+W+R DLR DN AL A N A+FI+TP+QW H + + FI LLQ+ Sbjct: 1 MVLLWIRRDLRCFDNPALMDAVANGCR--YALFISTPQQWDLHHEAPIKLDFIRRHLLQL 58 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128 ++ L + G+ + ++F E L +C + + ++ N + E NE +RD+ L L Sbjct: 59 EQQLFELGVKLVHLTSTDFSAQSELLIRFCREHHIHRVLANSEPEFNEQQRDRSL---LS 115 Query: 129 HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188 + + +D V+ P G +LN + +M+KV+TPF+KA ++++ + + + P Sbjct: 116 SGLDIEFYDCDVIAPRGRVLNQSGEMFKVFTPFKKAWLKHVREFGVECIGRPQGLSKPLS 175 Query: 189 TP------SNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGT 242 P ++ +P+ ++ ++ F KV Y E+RD PAI+GT Sbjct: 176 PPARDLIGELNSSSSLINSSSLSTSWPLADEVMEKVIPHFFSAKVCDYKERRDFPAIKGT 235 Query: 243 SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVC 302 S LSPYL+IG LSPR + +L + L+ AF WLNELIWR+FY+HL+ YP + Sbjct: 236 SGLSPYLAIGALSPRTLYQQLLARYPQLIEDDNHPAFCWLNELIWRDFYKHLLFHYPRLS 295 Query: 303 MGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLV 362 F+ K +W AW +G TG+P++DAAMRQL GWMHNRLRM+ ASFL Sbjct: 296 KQTSFLEKYAKTQWPGTQAEFDAWSKGETGYPLVDAAMRQLVRTGWMHNRLRMVVASFLT 355 Query: 363 KDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQG 422 K LLVDWR GE++FMS L+DGD ++NNGGWQWAASTG D+ PYFR+FNP +Q ++FDP G Sbjct: 356 KHLLVDWRQGEQFFMSHLIDGDHSANNGGWQWAASTGCDAQPYFRVFNPILQSQKFDPNG 415 Query: 423 TFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYY 475 FIR +LPELN++PT+YIH PH ++ K+ +S Y P+V+HK A + Y Sbjct: 416 DFIRKYLPELNDIPTKYIHFPHDYMAKHGVSDTYWPPVVEHKAARLRAIAFYK 468 >gi|91777293|ref|YP_552501.1| deoxyribodipyrimidine photo-lyase type I [Burkholderia xenovorans LB400] gi|91689953|gb|ABE33151.1| deoxyribodipyrimidine photo-lyase type I [Burkholderia xenovorans LB400] Length = 499 Score = 414 bits (1064), Expect = e-113, Method: Composition-based stats. Identities = 176/494 (35%), Positives = 251/494 (50%), Gaps = 37/494 (7%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQ-------WRQHGIS----ARQ 57 LVWLR DLR TDN ALY A + + +V VF+ W R+ Sbjct: 13 TGLVWLRRDLRNTDNAALYYALKHCE-RVWCVFVFDTTILQPLVDAWHARHPDTQPQDRR 71 Query: 58 SHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEV 117 FI A+L ++ ++L G + + E + + V +F N YE + Sbjct: 72 IEFILAALGELDEALRADGGGLIVL----YGNPAELVPKLADELGVDAVFANHDYEPVAI 127 Query: 118 RRDKLLEKRLQHRV-ICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRS 176 RD + +RL +F D V+ +L + + V+TP+R A ++ L DL+ Sbjct: 128 ERDGTVRERLAEAGRQWLTFKDQVIFERDEVLTGQSKPFTVFTPYRNAWLRQLSAFDLKP 187 Query: 177 LPVPAIRLTGPVTPS----NIPRFFDYPFQAIDPM---FPIGEQNALHILRKFCKEKVYY 229 PV PS +P F + P G A +L F ++ Sbjct: 188 YPVETYAKRLAALPSKFDRQLPTLEQLGFAPSNLGELNLPAGMSGAQRLLDDFMT-RIDS 246 Query: 230 YVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWRE 289 Y ++RD PA +G S LS +L G +S R E + G+ +WL+ELIWR+ Sbjct: 247 YADRRDFPAAKGPSYLSIHLRFGTVSIRTLARLAHEMSLQ---PDGQGSATWLSELIWRD 303 Query: 290 FYRHLMAFYPSVCMGKPFIPWTEKIEWNK---DSHLLQAWKQGYTGFPIIDAAMRQLNTI 346 FY ++A +P + G F +++ W + AW G TG+P++DAAM QLN Sbjct: 304 FYFMILAHHPRLARGASFREEYDRLRWEQGLQADEAFAAWCNGRTGYPLVDAAMLQLNRT 363 Query: 347 GWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYF 406 G+MHNRLRM+TASFLVKDL VDWR+GE YF QL D D ++NNGGWQWAASTG D+ PYF Sbjct: 364 GYMHNRLRMVTASFLVKDLGVDWRLGERYFAEQLNDFDFSANNGGWQWAASTGCDAQPYF 423 Query: 407 RIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKN------DLSLNYPLPI 460 RIFNP Q ++FD +G FI+ +LP+L +P+++IHAP + L +YP PI Sbjct: 424 RIFNPVTQSEKFDAEGRFIKRYLPQLAKLPSKWIHAPWLAGAERLADCGVVLGKDYPAPI 483 Query: 461 VDHKKACHHTLNQY 474 VDH +A TL ++ Sbjct: 484 VDHAEARARTLARF 497 >gi|254481485|ref|ZP_05094729.1| deoxyribodipyrimidine photolyase family protein [marine gamma proteobacterium HTCC2148] gi|214038113|gb|EEB78776.1| deoxyribodipyrimidine photolyase family protein [marine gamma proteobacterium HTCC2148] Length = 483 Score = 414 bits (1064), Expect = e-113, Method: Composition-based stats. Identities = 153/487 (31%), Positives = 233/487 (47%), Gaps = 24/487 (4%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 + W R DLR+TD L+AA S VI FI E + + +++ SL + Sbjct: 6 PVIYWFRRDLRLTDLPGLHAALA-SGKPVIPCFILDDESTEEWAMGGASRWWLHHSLQAL 64 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLL-EKRL 127 KS++++G + D+ L++ + ++ + YE + +K L E+ Sbjct: 65 TKSVAEQGGNLLVRRG----DTQAQLNALVNETGAAAVYCSELYEPDARELEKTLGEELA 120 Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAI----- 182 + ++ P + N + +KV+TPF + +Q L L Sbjct: 121 KSGAALHCLPGTLFFRPHEVRNGSGLPFKVFTPFWRHCMQRLPSMPLPQKTTFTTNSFLQ 180 Query: 183 RLTGPVTPSNIPRFFDYPFQAID--PMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ 240 ++ D P A D + GE A L++F + Y + RD PA Sbjct: 181 HSLTGLSCEQWQLLPDSPNWAADWHSYWTPGEAGATETLKQFVTNTLADYAQGRDFPARD 240 Query: 241 GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPS 300 +S+LS + G +SPRQ W + + +L+EL WR+F HL+ +P Sbjct: 241 ASSRLSAHFHWGEISPRQAWAAV----NKAPGSNEKDQHKFLSELGWRDFNHHLLFHFPH 296 Query: 301 VCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASF 360 + +PF P ++ W +AW +G TG+PI+DA MR+L G+MHNR+RMI ASF Sbjct: 297 IA-DRPFKPSFSQMPWQGSDETFKAWCEGRTGYPIVDAGMRELWQTGFMHNRVRMICASF 355 Query: 361 LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDP 420 L K LL+ W+ G +F L+D DLA+N+GGWQW A G D+ P+FRIFNP +QGK+FD Sbjct: 356 LTKHLLLPWQWGARWFWDTLVDADLANNSGGWQWVAGCGADASPWFRIFNPMLQGKKFDG 415 Query: 421 QGTFIRHWLPELNNVPTQYIHAPHSWL------DKNDLSLNYPLPIVDHKKACHHTLNQY 474 G ++R WLPEL + + + P L +YP PIVDHK+A L+ Y Sbjct: 416 DGEYVRRWLPELAGLSDRDLQIPWEAPPLVLADAGVTLGSDYPFPIVDHKEARVAALDAY 475 Query: 475 YAAKKQS 481 A K S Sbjct: 476 DAVSKAS 482 >gi|113867687|ref|YP_726176.1| deoxyribodipyrimidine photolyase [Ralstonia eutropha H16] gi|113526463|emb|CAJ92808.1| deoxyribodipyrimidine photolyase [Ralstonia eutropha H16] Length = 513 Score = 414 bits (1064), Expect = e-113, Method: Composition-based stats. Identities = 176/492 (35%), Positives = 247/492 (50%), Gaps = 28/492 (5%) Query: 10 HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGIS----ARQSHFIYASL 65 LVW R DLR D+ AL+ A + +V VF+ E R+ FI SL Sbjct: 28 GLVWFRRDLRADDHAALHYALKHC-RQVWCVFVFDREILDPLIARGRKVDRRVEFILRSL 86 Query: 66 LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125 ++++L+ G D + + + + +F N YE RRD + + Sbjct: 87 EPLRRTLTDAGGGLIVLD----DIARDAIPRLAAELDADAVFTNHDYEPAAKRRDTAVRQ 142 Query: 126 RLQHR-VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL 184 L + +F D V+ +L Q + V+ P++ A ++ + DLR PV Sbjct: 143 ALASDSRVLFTFKDQVIFEADELLTGQGQPFSVFAPYKNAWLRAVQPFDLRPYPVDQYLG 202 Query: 185 TGPVTPSNIPR----FFDYPFQAID---PMFPIGEQNALHILRKFCKEKVYYYVEQRDIP 237 P + D F A + P G A + +F +++ Y +RD P Sbjct: 203 ALAPVPRQYQKASPMLHDLGFAASNLAEIAMPTGSDGARALFDEFI-DRIGDYGYRRDFP 261 Query: 238 AIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAF 297 +++G S LS +L G +S R + + +GA WL+ELIWR+FY ++ Sbjct: 262 SLRGPSYLSVHLRFGTISIRTLARAALDAVL-RGGSESAGAAVWLSELIWRDFYFMILHH 320 Query: 298 YPSVCMGKPFIPWTEKIEWNKD---SHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLR 354 +P V GK F P + ++W QAW TG+P++DAAM Q+ G+MHNRLR Sbjct: 321 HPRVADGKSFRPEYDALQWVDSVTGDKYFQAWCDAQTGYPLVDAAMLQIRQSGYMHNRLR 380 Query: 355 MITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQ 414 M+TASFLVKDL VDWR GE+YF QL D D ++NNGGWQWAASTG D+ PYFRIFNP Q Sbjct: 381 MVTASFLVKDLGVDWRRGEQYFADQLNDFDFSANNGGWQWAASTGCDAQPYFRIFNPVKQ 440 Query: 415 GKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWL------DKNDLSLNYPLPIVDHKKACH 468 ++FDPQG FIR +LP L +P QYIHAP + L NYP PIV H+ A Sbjct: 441 SEKFDPQGRFIRKYLPVLAQMPDQYIHAPWTAPVNVLATAGVKLGENYPPPIVQHEVARK 500 Query: 469 HTLNQYYAAKKQ 480 TL +Y A +K Sbjct: 501 QTLERYAAIRKS 512 >gi|254514439|ref|ZP_05126500.1| DNA photolyase [gamma proteobacterium NOR5-3] gi|219676682|gb|EED33047.1| DNA photolyase [gamma proteobacterium NOR5-3] Length = 482 Score = 414 bits (1063), Expect = e-113, Method: Composition-based stats. Identities = 156/479 (32%), Positives = 236/479 (49%), Gaps = 16/479 (3%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 ++W R DLRI D AL AA + KV+ ++I + +++ SL + Sbjct: 4 TVVLWFRQDLRINDLPALQAATRDGQ-KVLPIYILDEDAPGDWSPGGASRWWLHHSLTAL 62 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128 + + G + + + L C ++ +R+YE + ++ L K L Sbjct: 63 AQDIDHLGGTLIFRKGKT----LSILRDVCEASGARAIYCSRRYEPWAGQEEQTLYKALD 118 Query: 129 -HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187 + K F S+L PGS+L +KV+TPF +A +N V V Sbjct: 119 SDNISFKRFPGSLLHEPGSVLTQGGGPFKVFTPFWRACRRNEVPQPAEKPSVAWAEGIQS 178 Query: 188 VTPSNIPRFFDYPFQA--IDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245 T P A + + GE A L F + V Y ++RD+P++ TS++ Sbjct: 179 DTLDAWKLLPRDPDWAASWNEFWQPGENGAQARLHAFLDDTVSRYADERDLPSVDATSRM 238 Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305 S +L G +SPRQ W +++ ++ + + EL WREF HL+ F+P + Sbjct: 239 SAHLHHGEISPRQIWAMCEQKKLE-QPHSDTAINKFQAELGWREFSYHLLHFFPHLPET- 296 Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365 PF W + LQAW++G TG+PI+DA MR+L G MHNR+RM+ ASFL K L Sbjct: 297 PFKENFSGFPWQANETYLQAWQRGQTGYPIVDAGMRELWATGIMHNRVRMVVASFLCKHL 356 Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425 L WR GE++F L+D DLASN WQW A +G D+ PYFRIFNP QG++FD QG ++ Sbjct: 357 LQHWRCGEDWFWDTLVDADLASNGCSWQWVAGSGADAAPYFRIFNPVTQGEKFDKQGDYV 416 Query: 426 RHWLPELNNVPTQYIHAPHSWLDK------NDLSLNYPLPIVDHKKACHHTLNQYYAAK 478 R W+PE+ + +Y+H P + L +YP PIVDH++A L+ Y + Sbjct: 417 RRWVPEIAALSNKYLHKPWEAPAEVLSQAGVTLGADYPEPIVDHREARQAALDAYEHIR 475 >gi|71909505|ref|YP_287092.1| deoxyribodipyrimidine photo-lyase type I [Dechloromonas aromatica RCB] gi|71849126|gb|AAZ48622.1| deoxyribodipyrimidine photo-lyase type I [Dechloromonas aromatica RCB] Length = 470 Score = 414 bits (1063), Expect = e-113, Method: Composition-based stats. Identities = 171/483 (35%), Positives = 249/483 (51%), Gaps = 29/483 (6%) Query: 10 HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGI-SARQSHFIYASLLQV 68 LVW R DLR D+ A +A +V F+ E R+ HFI SL+++ Sbjct: 6 ALVWFRRDLRDHDHAA-LSAALAEAQQVYCAFVFDSEILDPLPTRHDRRVHFIRESLVEL 64 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128 +L +G +++ + + + V+ +F NR YE + RRD + ++L+ Sbjct: 65 DAALRARGGGLIIRHG----QAVDEIPALARRLGVSAVFTNRDYEPSAKRRDAQVARQLR 120 Query: 129 HR-VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187 + + D + +L A + + V+TP++ A ++ L AD + P Sbjct: 121 NDDIAFHGVKDQAIFDGDEVLTQAGKAFSVFTPYKNAWLKRLTTADYAAWPCDGRLAGQE 180 Query: 188 VTPSNIPRFFDYPFQAIDPM---FPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244 + IP + F D G A + F ++++ Y RD PA++G S Sbjct: 181 LA--GIPTLEEIGFTPTDLAELGIQPGMSGAKGLWDDFSRDRIERYGSLRDFPAVKGVSY 238 Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304 LS +L G +S RQ + D +WL+ELIWR+FY ++ +P V G Sbjct: 239 LSVHLRFGTISIRQLVRQALAHQAD----------TWLSELIWRDFYFMILDHFPHVA-G 287 Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364 F P + I+W AW +G TG+P++DAAMRQLN GWMHNRLRM+ ASFL KD Sbjct: 288 HAFKPEYDAIQWASRPEAFAAWCEGCTGYPLVDAAMRQLNFSGWMHNRLRMVVASFLTKD 347 Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424 L +DWR+GE+YF QL D DL++NNGGWQWA+S+G D+ PYFRIFNP Q ++FD +G F Sbjct: 348 LGIDWRLGEKYFAEQLNDFDLSANNGGWQWASSSGCDAQPYFRIFNPVTQSEKFDAEGKF 407 Query: 425 IRHWLPELNNVPTQYIHAPHSWLDKND------LSLNYPLPIVDHKKACHHTLNQYYAAK 478 IR ++PEL V +YIHAP + +YP PIVDH A TL +Y K Sbjct: 408 IRRYVPELAKVHDKYIHAPWKMGRIEQEALGVVIGRDYPSPIVDHATARDETLARYAVVK 467 Query: 479 KQS 481 KQ+ Sbjct: 468 KQA 470 >gi|257095136|ref|YP_003168777.1| Deoxyribodipyrimidine photo-lyase [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] gi|257047660|gb|ACV36848.1| Deoxyribodipyrimidine photo-lyase [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] Length = 482 Score = 413 bits (1062), Expect = e-113, Method: Composition-based stats. Identities = 176/490 (35%), Positives = 246/490 (50%), Gaps = 23/490 (4%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQ-HGISARQSHFIYASL 65 M LVW R DLR +D+ AL A +V F+ E + R+ FI SL Sbjct: 1 MDSILVWFRRDLRDSDHAALCEALRRG-RRVFCAFVFDREILDALDHEADRRVEFIRESL 59 Query: 66 LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125 +++ +L +G + + V +F NR YE +RD + Sbjct: 60 VELDAALRTRGGALLVRHG----WATREIPDLARGLGVAAVFVNRDYEPGAKQRDAAVSA 115 Query: 126 RLQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL 184 L+ I +SF D +L +L+ A + Y V+TP+R A ++ L D + L Sbjct: 116 ALKADGIAFESFKDQAILDGDEVLSQAGRPYTVFTPYRNAWLKRLTDDDWYPHQAGSGVL 175 Query: 185 TGPVTPSNIPRFFDYPFQAIDPM---FPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQG 241 +P F D G + +L F ++ Y +QRD PA++G Sbjct: 176 AATPAADGVPPLAKIGFSGTDLRRLGIVPGMRGGRQLLADFL-GRIGRYRQQRDFPAVKG 234 Query: 242 TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSV 301 S LS +L G +S R K + GA +WL+EL+WR+FY ++ +P V Sbjct: 235 VSYLSVHLRFGTVSVRDLV--AKAIAAGAFREGGEGAATWLSELVWRDFYFMILDRFPHV 292 Query: 302 CMGKPFIPWTEKIEWN---KDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITA 358 + + F P + I W + AW G TG+P++DAAMRQLN+ G+MHNRLRM+ A Sbjct: 293 -VERAFKPAYDLINWQAGAQAEDAFSAWCAGRTGYPLVDAAMRQLNSSGYMHNRLRMLVA 351 Query: 359 SFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRF 418 SFL KDL +DWR+GE YF QL D DL++NNGGWQWAASTG D+ PYFRIFNP Q +RF Sbjct: 352 SFLTKDLGIDWRLGERYFARQLNDYDLSANNGGWQWAASTGCDAQPYFRIFNPVTQSERF 411 Query: 419 DPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND------LSLNYPLPIVDHKKACHHTLN 472 DP G FIR +LPEL NVP ++IHAP + P P+VDH +A TL Sbjct: 412 DPAGKFIRRYLPELANVPDRFIHAPWRMSSVEQSACGVLIGRTTPAPLVDHDQARQRTLE 471 Query: 473 QYYAAKKQSL 482 +Y K ++ Sbjct: 472 RYAIVKSPAV 481 >gi|156039880|ref|XP_001587047.1| hypothetical protein SS1G_12076 [Sclerotinia sclerotiorum 1980] gi|154696133|gb|EDN95871.1| hypothetical protein SS1G_12076 [Sclerotinia sclerotiorum 1980 UF-70] Length = 595 Score = 413 bits (1062), Expect = e-113, Method: Composition-based stats. Identities = 165/480 (34%), Positives = 248/480 (51%), Gaps = 21/480 (4%) Query: 6 AMSVHLVWLRNDLRITDNKALYAACHNS---DAKVIAVFIATPEQWRQHGISARQSHFIY 62 A + W + DLR DN AL+ A + ++A++I +P+ + H + + FI Sbjct: 107 AKDCVVHWFKCDLRTRDNTALWMASEKAKEKGVPLVAMYIISPQDFEAHLTAPVRVDFIL 166 Query: 63 ASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKL 122 +L +++ L++ + + + + L+ N +YE++E+RR+ Sbjct: 167 RTLEILKRDLAELDVPLYVETVEKRKGVEGRILELLGEWGASHLYANMEYEVDELRREAR 226 Query: 123 LEKRLQHRVICKSF-DDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQAD-------- 173 + + R I D+ ++ PG + + + Y VYTP+ KA I ++ + Sbjct: 227 MVRDCAERGIAMDVLHDTCVVRPGELRSGQGKQYSVYTPWFKAWIAHVHENSDLLDLFDA 286 Query: 174 LRSLPVPAIRLTGPVTPSNIP------RFFDYPFQAIDPMFPIGEQNALHILRKFCKEKV 227 P A + + IP D + M+P GE A L KF EK+ Sbjct: 287 PGKNPASAREKFAKLFETKIPDAPANKSLTDEEKKRFHSMWPAGEHAAQERLSKFADEKI 346 Query: 228 YYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFV-DLLIKPKSGAFSWLNELI 286 Y E R+ P + TS LS + + G LS R ++ L G +W++E+ Sbjct: 347 NKYEEHRNFPNLNSTSSLSVHFASGTLSARTAIRTARDHNNTKKLNAGYQGIQTWISEVA 406 Query: 287 WREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTI 346 WR+FY+H++ +P VCM KPF P I W ++ QAW +G TG+PI+DAAMRQL Sbjct: 407 WRDFYKHVLVHWPYVCMNKPFKPEYTNITWEYNNTHFQAWTEGKTGYPIVDAAMRQLKHC 466 Query: 347 GWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYF 406 G+MHNR RMI SFL K LL+DWR+GE +FM L+DGD ASNNGGW + ASTG D PYF Sbjct: 467 GYMHNRCRMIVGSFLAKHLLIDWRMGERFFMEHLIDGDFASNNGGWGFCASTGVDPQPYF 526 Query: 407 RIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSL--NYPLPIVDHK 464 RIFNP +Q ++FD +G FIR W+PEL +V ++IH P ++ YP IV+HK Sbjct: 527 RIFNPLLQSEKFDAEGEFIRKWVPELKSVKGKFIHEPFGDKVAAGVARKNGYPERIVEHK 586 >gi|332993097|gb|AEF03152.1| deoxyribodipyrimidine photo-lyase [Alteromonas sp. SN2] Length = 474 Score = 413 bits (1062), Expect = e-113, Method: Composition-based stats. Identities = 166/487 (34%), Positives = 245/487 (50%), Gaps = 32/487 (6%) Query: 12 VWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQKS 71 +W R DLR+ DN AL AAC + K+I ++I + + +++ SL + Sbjct: 1 MWFRQDLRVKDNPALNAAC--DEGKIIPIYIYDDNATDGRALGGASNWWLHHSLNSLNDR 58 Query: 72 LSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK-RLQHR 130 L+ VF+ D + + +++NR YE ++ RDK ++K L + Sbjct: 59 LNGHLKVFK-------GDPKALIPALMEAYEAKGIYWNRCYEPWQINRDKAIKKQLLDND 111 Query: 131 VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAI-------- 182 S + S+L P +L Y+V+TP+ + N+ P I Sbjct: 112 YEAHSSNGSLLWEPMKVLKKDGTPYRVFTPYYRKGCLNVEPPRYPQAPPARITYADVDDS 171 Query: 183 RLTGPVTPSNIPRFFDYPFQAIDP----MFPIGEQNALHILRKFCKEKVYYYVEQRDIPA 238 ++T NI P D + GE A L+ F + Y + RDIP+ Sbjct: 172 KITKANHSCNIDDLNLLPSLGWDSDFKNHWKPGEDGAADNLQYFIQHAARKYKDARDIPS 231 Query: 239 IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFY 298 + GTS LSP+L G +SP Q W +K+ F ++L+EL WREF +L+ + Sbjct: 232 MNGTSHLSPHLHFGEVSPNQVWYAIKDRFE---TSEDKSIDTYLSELGWREFSYYLLYHF 288 Query: 299 PSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITA 358 P++ K F +K W D+ L+AW+ G TG PI+DA MR+L G+MHNR+RMI Sbjct: 289 PTIPT-KNFNDKFDKFNWRSDAKSLKAWQTGQTGIPIVDAGMRELWQTGYMHNRVRMIVG 347 Query: 359 SFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRF 418 SFLVK+LL+ W+ GE +F L+D DLASN GWQW A TG D+ PYFRIFNP +QG++F Sbjct: 348 SFLVKNLLISWQEGERWFWDCLVDADLASNTAGWQWVAGTGADAAPYFRIFNPLLQGEKF 407 Query: 419 DPQGTFIRHWLPELNNVPTQYIHAPHSWL------DKNDLSLNYPLPIVDHKKACHHTLN 472 D QG ++R + PEL ++P +YIH P L YP PIVD K + L+ Sbjct: 408 DKQGKYVRKYCPELADLPDKYIHKPWDAPPVIAKDAGVHLGDTYPKPIVDLKASRQRALD 467 Query: 473 QYYAAKK 479 + A K+ Sbjct: 468 AFQALKE 474 >gi|300023724|ref|YP_003756335.1| DNA photolyase FAD-binding protein [Hyphomicrobium denitrificans ATCC 51888] gi|299525545|gb|ADJ24014.1| DNA photolyase FAD-binding protein [Hyphomicrobium denitrificans ATCC 51888] Length = 482 Score = 413 bits (1062), Expect = e-113, Method: Composition-based stats. Identities = 160/482 (33%), Positives = 247/482 (51%), Gaps = 19/482 (3%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 ++W RNDLR+ D+ AL AA H A ++ ++I +Q + ++ SL + Sbjct: 7 VLWFRNDLRLGDHAALVAAVHTG-APILPLYILDDASPKQWKMGGASHWWLDKSLAALAG 65 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH- 129 L+ +G + + + + ++ + +++ R YE V ++ L+ +L Sbjct: 66 DLASRGGPLVLRRGDSETELLRMIE----ETGAAAVYFTRSYEPWAVALEQRLKTKLDDA 121 Query: 130 RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189 V C+ F +L P + YKVYTPF +A++++LV A P L Sbjct: 122 NVACRRFGGRLLREPEDMRTSNGGFYKVYTPFSRAIMKDLVPAKSVRAPERIATLEKQPK 181 Query: 190 PSNIPRFFDYP-----FQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244 + + +P + + GE A L F + + Y R+ PA GTS+ Sbjct: 182 SERLRDWALHPQKPDWSKGFAAAWQPGEAGARKRLSDFVRTALKSYARDRNCPATPGTSR 241 Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304 LSP+L+ G +SP CW+ + A ++L EL+WREF L+ +P + Sbjct: 242 LSPHLAFGEISPAACWHAAAHAGGKTNGSDNA-AETFLKELLWREFSAGLLFHFPELPE- 299 Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364 +PF P W+ ++ L+AW+ G TG+PI+DA MR+L G+MHNR+RMITASFL+K Sbjct: 300 EPFRPEFSAFPWHGNAKHLKAWQTGQTGYPIVDAGMRELWATGYMHNRVRMITASFLIKH 359 Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424 LL+ W+ GE +F L+D DLA+N+ WQW A +G D+ PYFRIFNP +QG++FDP G + Sbjct: 360 LLIPWQTGEAWFWDTLVDADLANNSANWQWVAGSGADAAPYFRIFNPVLQGEKFDPDGDY 419 Query: 425 IRHWLPELNNVPTQYIHAPHS------WLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478 +R W+PEL +P Q IHAP L +YP PIV+H +A L Y K Sbjct: 420 VRRWVPELAKLPRQIIHAPWKADSGTLMEAGVKLGKSYPNPIVEHGEARARALAGYEHIK 479 Query: 479 KQ 480 Sbjct: 480 NS 481 >gi|116871975|ref|YP_848756.1| deoxyribodipyrimidine photolyase [Listeria welshimeri serovar 6b str. SLCC5334] gi|116740853|emb|CAK19973.1| deoxyribodipyrimidine photolyase [Listeria welshimeri serovar 6b str. SLCC5334] Length = 470 Score = 413 bits (1062), Expect = e-113, Method: Composition-based stats. Identities = 171/481 (35%), Positives = 252/481 (52%), Gaps = 26/481 (5%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 ++W R DLRI DNKALY A +D +I +F PEQ+ + ++S+ Sbjct: 2 TSVMWFRRDLRINDNKALYHASKEND--LILLFQVNPEQFIS---GSPSHQAFFSSVANF 56 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRV-TKLFYNRQYEINEVRRDKLLEKRL 127 +K + + H F + IE L K+F+N+ +RDK Sbjct: 57 KKEIDKN-----AHLQIMFGEPIELLKRLKDAIPAWDKVFFNQDETGYGAKRDKAARAFF 111 Query: 128 Q-HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 + + + ++ D+ L + + + YK++TP+ K + + + +S+ P + Sbjct: 112 EYNNITVHAYHDAYLHSAEEVKKTSTEYYKIFTPYYKKWREEIKETPFKSVLTPENIIKK 171 Query: 187 PVTPSNIPRFFDYPFQAIDPMFPI-GEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245 + P + +F + + GE+ A L+ F K + Y + RDIP TS L Sbjct: 172 ELFPHDEEQFEKLIQDLPELDLKVLGEEAANTRLKNFIKRDLAEYAKARDIPDSDQTSHL 231 Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305 S YL G +S R W L++ KP G + EL WR+FY + +P+ + Sbjct: 232 SRYLRTGEISIRTVWQALQQ------TKPTEGRAIFEKELCWRDFYNMIYVSFPNQ-KNE 284 Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365 P IEW + + W++G TG+P++DAAMRQL GWMHNRLRMITASFL KDL Sbjct: 285 PIQENYRFIEWENNREFFKQWQEGKTGYPLVDAAMRQLKETGWMHNRLRMITASFLTKDL 344 Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425 L+DWR GE+YF L+D D ASN GWQWAASTG D+VPYFRIFNPT Q ++FDP G FI Sbjct: 345 LIDWRYGEKYFQQMLIDYDPASNISGWQWAASTGTDAVPYFRIFNPTTQSEKFDPSGKFI 404 Query: 426 RHWLPELNNVPTQYIHAPHSWLDKND------LSLNYPLPIVDHKKACHHTLNQYYAAKK 479 R ++ EL+N+P ++IH P + L +YPLPIVDHK+ +++Y +K+ Sbjct: 405 RKYVEELSNLPDKFIHQPEKMSESQQKEHNLILGDDYPLPIVDHKERRKLAISRYEFSKE 464 Query: 480 Q 480 Q Sbjct: 465 Q 465 >gi|313610351|gb|EFR85579.1| deoxyribodipyrimidine photo-lyase [Listeria monocytogenes FSL F2-208] Length = 467 Score = 413 bits (1061), Expect = e-113, Method: Composition-based stats. Identities = 170/481 (35%), Positives = 244/481 (50%), Gaps = 27/481 (5%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 ++W R DLR+ DNKALY AC D ++ +F P Q+ + + S+ Sbjct: 2 TSVMWFRRDLRVNDNKALYNACKEDD--LLLLFQVNPAQFIT---GSPSHQAFFTSVAHF 56 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQ-RVTKLFYNRQYEINEVRRDKLLEKRL 127 ++ + + H F + IE K+++NR RD+ + Sbjct: 57 KQEIDK-----TAHLQIMFGEPIECFQQLKDTLPSWDKVYFNRDETGYGAERDEAAQAFF 111 Query: 128 -QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 + ++ +SF DS L + + YK++TP+ K + + + + P Sbjct: 112 DEQKIEVQSFHDSYLHSAEEVKKSPTEYYKIFTPYYKKWREEIKETPFKVTLKPENIRKE 171 Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246 + P +F + P+ GE+ A L F K + Y + RD P + TS LS Sbjct: 172 SLFPKYEEQFAEMTCDL--PILDSGERAANTRLANFIKHDIADYDKARDFPELDKTSHLS 229 Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP 306 YL G +S R W L+E + G ++ EL WR+FY + +P+ +P Sbjct: 230 RYLRTGEISIRTIWQALQE------TEATEGRATFEKELCWRDFYNMIYVSFPNQ-KNEP 282 Query: 307 FIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLL 366 IEW + +AW++G TGFP++DAAMRQL GWMHNRLRMITASFL KDLL Sbjct: 283 IQENYRFIEWENNREFFKAWQEGETGFPLVDAAMRQLKETGWMHNRLRMITASFLTKDLL 342 Query: 367 VDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIR 426 +DWR GE+YF L+D D ASN GGWQWAASTG D+VPYFRIFNPT Q ++FDP G FIR Sbjct: 343 IDWRFGEKYFQQMLIDYDPASNIGGWQWAASTGTDAVPYFRIFNPTTQSQKFDPTGEFIR 402 Query: 427 HWLPELNNVPTQYIHAPHSWLDKND------LSLNYPLPIVDHKKACHHTLNQYYAAKKQ 480 ++ EL N+P +YIH P + L +YP PIVDHK+ + +Y +K+ Sbjct: 403 KYVKELANLPDKYIHQPEKMTETEQKEHGLLLGKDYPFPIVDHKERRKLAIARYEFSKEH 462 Query: 481 S 481 S Sbjct: 463 S 463 >gi|296159661|ref|ZP_06842484.1| Deoxyribodipyrimidine photo-lyase [Burkholderia sp. Ch1-1] gi|295890105|gb|EFG69900.1| Deoxyribodipyrimidine photo-lyase [Burkholderia sp. Ch1-1] Length = 499 Score = 412 bits (1060), Expect = e-113, Method: Composition-based stats. Identities = 173/494 (35%), Positives = 252/494 (51%), Gaps = 37/494 (7%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQ-------WRQHGIS----ARQ 57 LVWLR DLR TDN ALY A + + +V VF+ W R+ Sbjct: 13 TGLVWLRRDLRNTDNAALYYALKHCE-RVWCVFVFDTTILQPLVDAWHARHPDTQPQDRR 71 Query: 58 SHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEV 117 FI A+L ++ ++L G + + + + + + +F N YE + Sbjct: 72 IEFILAALGELDEALRTDGGGLIVL----YGNPADLVPTLADELGADAVFANHDYEPVAI 127 Query: 118 RRDKLLEKRLQHRV-ICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRS 176 RD+ + ++L +F D V+ +L + + V+TP+R A ++ L DL+ Sbjct: 128 ERDETVREQLAEAGRQWLTFKDQVIFERDEVLTGQSKPFTVFTPYRNAWLRQLSTFDLKP 187 Query: 177 LPVPAIRLTGPVTPS----NIPRFFDYPFQAIDP---MFPIGEQNALHILRKFCKEKVYY 229 PV PS +P F + P G A +L F ++ Sbjct: 188 YPVETYAKHLAALPSRLDRQLPTLEQLGFAPSNLGELSLPTGMSGAQRLLDDFMT-RIDS 246 Query: 230 YVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWRE 289 Y ++RD PA +G S LS +L G +S R E + G+ +WL+ELIWR+ Sbjct: 247 YADRRDFPAAKGPSYLSIHLRFGTVSIRTLARLAHELSLQ---PDGQGSATWLSELIWRD 303 Query: 290 FYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHL---LQAWKQGYTGFPIIDAAMRQLNTI 346 FY ++A +P + G F +++ W + AW G TG+P++DAAM QLN Sbjct: 304 FYFMILAHHPRLARGASFKEEYDRLRWEQGPEADEAFAAWCDGRTGYPLVDAAMLQLNRT 363 Query: 347 GWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYF 406 G+MHNRLRM+TASFLVKDL VDWR+GE YF QL D D ++NNGGWQWAASTG D+ PYF Sbjct: 364 GYMHNRLRMVTASFLVKDLGVDWRLGERYFAEQLNDFDFSANNGGWQWAASTGCDAQPYF 423 Query: 407 RIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKN------DLSLNYPLPI 460 RIFNP Q ++FD +G FI+ +LP+L +P+++IHAP + L +YP PI Sbjct: 424 RIFNPVTQSEKFDAEGRFIKRYLPQLAKLPSKWIHAPWLAGAERLAECGVVLGKDYPAPI 483 Query: 461 VDHKKACHHTLNQY 474 VDH +A TL ++ Sbjct: 484 VDHAEARARTLARF 497 >gi|304321394|ref|YP_003855037.1| blue light photoreceptor cryptochrome [Parvularcula bermudensis HTCC2503] gi|303300296|gb|ADM09895.1| blue light photoreceptor cryptochrome [Parvularcula bermudensis HTCC2503] Length = 478 Score = 412 bits (1060), Expect = e-113, Method: Composition-based stats. Identities = 162/485 (33%), Positives = 245/485 (50%), Gaps = 25/485 (5%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 ++WLR DLR DN A+ A S A V+ +++ + A Q +++ SL Sbjct: 4 PVILWLREDLRFDDNPAMREAAA-SGAPVLCLYVLDDATAGDFAMGAAQRWWLHHSLCAF 62 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128 ++ L +G + E + + + + + +F+NR+Y + D ++ LQ Sbjct: 63 KEDLETRGGALILRRGKE----TEIVPALAKEIKASHVFWNRRYMKWQTDPDTEIKSALQ 118 Query: 129 H-RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187 + S + +L P I + YKVYTP+ K+L Q R+ +L P Sbjct: 119 DMGIKGISCNGRLLYEPWEIETKSGDPYKVYTPYWKSLQQK---EGPRAALPRTDKLNAP 175 Query: 188 VTPSNIPRFFDYPF--------QAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAI 239 + + R D+ + +P++ GE+ A LR + Y + R+ P Sbjct: 176 PSLPSTDRLDDWNLLPRSPNWAEGFEPVWTPGEKGARARLRAWLDTDAASYDDCRNRPDQ 235 Query: 240 QGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYP 299 TS+LSP+L G +SP W+ + + + PK S+L+E+ WREF L+ ++P Sbjct: 236 DRTSRLSPHLHFGEISPVVLWHSVSDAM-EAGDIPKDQGTSFLSEIAWREFSYQLLYYHP 294 Query: 300 SVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITAS 359 +P + EW+ D L AW++G TG+PI+DA MRQL T GWMHNR+RMI S Sbjct: 295 -TMRDQPLMEKFTDFEWDTDKKALNAWQRGRTGYPIVDAGMRQLWTEGWMHNRVRMIVGS 353 Query: 360 FLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFD 419 FLVKDLL+DWR G +F L+D D A+N WQW A G D+ P+FRIFNPT Q ++FD Sbjct: 354 FLVKDLLLDWRDGMRWFWDCLVDADPANNTASWQWIAGCGADAAPFFRIFNPTTQSEKFD 413 Query: 420 PQGTFIRHWLPELNNVPTQYIHAPHSWLDK------NDLSLNYPLPIVDHKKACHHTLNQ 473 P G +IR ++PEL ++PT++IH P L YP PIVDH L++ Sbjct: 414 PDGAYIRRYVPELRDLPTRFIHEPRKASTAILKDAGIVLGETYPDPIVDHSDRRKQALSR 473 Query: 474 YYAAK 478 Y A K Sbjct: 474 YEAIK 478 >gi|148657549|ref|YP_001277754.1| deoxyribodipyrimidine photolyase [Roseiflexus sp. RS-1] gi|148569659|gb|ABQ91804.1| Deoxyribodipyrimidine photo-lyase type I [Roseiflexus sp. RS-1] Length = 491 Score = 412 bits (1060), Expect = e-113, Method: Composition-based stats. Identities = 172/490 (35%), Positives = 240/490 (48%), Gaps = 28/490 (5%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 + W R DLR+ DN AL A S +VI +FI + F+ A+L + Sbjct: 4 IHWFRRDLRLRDNPALSGAAARSGGRVIPLFILDDAILHAPRTGMARVAFMIAALRDLDA 63 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH- 129 SL +G + D L + +NR Y +RD+ +E L+ Sbjct: 64 SLRARGSRLVVRRGRPSD----VLRDLVGATGAVGVSWNRDYTPFARQRDQHIEAMLRDL 119 Query: 130 RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALI---QNLVQADLRSLPVPAIR-LT 185 V D+V++ P + + Y VYTP+R+ + LR+ P ++ + Sbjct: 120 NVATFIAADAVIMEPDDVRTDDGRPYTVYTPYRRRWRALVEQRRDDVLRAYEPPVLQPVP 179 Query: 186 GPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEK----VYYYVEQRDIPAIQG 241 V IP D I + GE L F + + Y + R++ A Sbjct: 180 DGVADLPIPDNPDLDVSVIQRIPAGGETTGAARLAAFLDPRATHGIAGYADGRNLLAEPA 239 Query: 242 TSQLSPYLSIGVLSPRQCW--------NRLKEEFVDLLIKPKSGAFSWLNELIWREFYRH 293 TS+LSPYL G ++PR +E+ + +W+ EL WR+FY Sbjct: 240 TSRLSPYLRFGCVAPRAALRAALNLLDRAGEEQDAECAATLTRSIETWIGELAWRDFYYQ 299 Query: 294 LMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRL 353 ++ +P V F P + +EW D L AWK+G TG+P++DAAMRQLN WMHNR Sbjct: 300 ILWHHPHVLRS-AFKPQYDALEWENDPALFDAWKEGRTGYPVVDAAMRQLNREAWMHNRA 358 Query: 354 RMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTI 413 RMI ASFL KDLL+DWR GE YFM QL+DGD A+NNGGWQW+A TG D+ PYFRIFNP Sbjct: 359 RMIVASFLTKDLLIDWRWGERYFMQQLVDGDHAANNGGWQWSAGTGTDAQPYFRIFNPVS 418 Query: 414 QGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND------LSLNYPLPIVDHKKAC 467 QG+ FDP+G ++R +LPEL VP +YIHAP + + +YP P+VDH + Sbjct: 419 QGQTFDPKGAYVRRYLPELEAVPDRYIHAPWTMPYAEQQRCGVIIGRDYPAPVVDHAERR 478 Query: 468 HHTLNQYYAA 477 L Y A Sbjct: 479 ARALALYRAV 488 >gi|120609600|ref|YP_969278.1| deoxyribodipyrimidine photo-lyase type I [Acidovorax citrulli AAC00-1] gi|120588064|gb|ABM31504.1| deoxyribodipyrimidine photo-lyase type I [Acidovorax citrulli AAC00-1] Length = 493 Score = 412 bits (1059), Expect = e-113, Method: Composition-based stats. Identities = 176/491 (35%), Positives = 247/491 (50%), Gaps = 23/491 (4%) Query: 8 SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67 S LVW R DLR D+ ALY A +V VF+ + R+ FI SL+Q Sbjct: 6 SKGLVWFRRDLRSDDHAALYHALRQC-GQVHCVFVFDTAILDPLPRADRRVEFIRESLVQ 64 Query: 68 VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127 + SL + E + + + V +F N E + RD + +RL Sbjct: 65 LDASLRALSGHRHGGLIVRHGVAAEEVPALAARLGVQAVFANHDDEPVALERDDRVRRRL 124 Query: 128 QHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 + ++ D + +L Y V+TP++ A ++ + L + PV Sbjct: 125 GTGGVQMLTYKDHAIFERAEVLTQGGTPYTVFTPYKNAWLRKVDAFYLSAYPVERHAGRL 184 Query: 187 PVTPSN----IPRFFDYPFQAIDPM---FPIGEQNALHILRKFCKEKVYYYVEQRDIPAI 239 P +P D F+ P G A +L F + ++ Y E RD PA+ Sbjct: 185 APRPEGERGGVPALADIGFEPAGLDRLPLPPGMDGARALLDDFLQ-RIDQYGEARDFPAV 243 Query: 240 QGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYP 299 +G S LS +L G LSPR+ E +GA +WLNELIWR+FY ++A +P Sbjct: 244 KGPSYLSVHLRFGTLSPRRAARAAHERMRQ----GSTGAATWLNELIWRDFYFQVLAHHP 299 Query: 300 SVCMGKPFIPWTEKIEWNKDS---HLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMI 356 V G F P + I W AW +G TG+P++DAAM Q+N G+MHNRLRM+ Sbjct: 300 QVAGGASFKPAYDAIAWEDGPQARERFAAWCEGRTGYPLVDAAMAQINRTGYMHNRLRMV 359 Query: 357 TASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGK 416 ASFLVKDL VDWR GE YF +L D DL++NNGGWQWA+S+G D+ PYFRIFNP Q + Sbjct: 360 VASFLVKDLGVDWRWGERYFAEKLNDFDLSANNGGWQWASSSGCDAQPYFRIFNPVSQSR 419 Query: 417 RFDPQGTFIRHWLPELNNVPTQYIHAPHSW------LDKNDLSLNYPLPIVDHKKACHHT 470 +FDP+G FIR +LP+L +P +++HAP L NYP P+VDH +A T Sbjct: 420 KFDPKGRFIRLYLPQLAALPDRWLHAPWEAGPLELEAAGVRLGDNYPHPVVDHDEARQRT 479 Query: 471 LNQYYAAKKQS 481 L +Y K ++ Sbjct: 480 LARYAVVKSEA 490 >gi|299534052|ref|ZP_07047404.1| deoxyribodipyrimidine photo-lyase [Comamonas testosteroni S44] gi|298717961|gb|EFI58966.1| deoxyribodipyrimidine photo-lyase [Comamonas testosteroni S44] Length = 490 Score = 412 bits (1059), Expect = e-113, Method: Composition-based stats. Identities = 175/493 (35%), Positives = 256/493 (51%), Gaps = 23/493 (4%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 + L+WLR DLR+ DN ALY A + K+ VF+ + R+ FI SL ++ Sbjct: 1 MGLIWLRRDLRLADNAALYHALQQCE-KLYCVFVFDDSILATLPHADRRVEFICQSLAEL 59 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128 +L + Q + + + + Q +F N E + RD + + L+ Sbjct: 60 DAALRETAGRPQTGLITRRGLPQDIIPALARQLGAGAVFCNDDDEPAAIARDAQVARSLK 119 Query: 129 HRV-ICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187 + + F D + +L +L + V+TP++ A ++ + L + P + Sbjct: 120 SQGQLLLRFKDHRIFARDEVLTQSLSPFSVFTPYKNAWLRKITPFYLSAYPSERDLASKL 179 Query: 188 VTPSN-----IPRFFDYPFQAIDPM---FPIGEQNALHILRKFCKEKVYYYVEQRDIPAI 239 + IP D F P G A +L F ++ Y RD PA+ Sbjct: 180 ADLPDSERRPIPTAADLGFAPDTLAGLRLPTGVSGARQLLADFLP-RLPQYKTARDFPAL 238 Query: 240 QGTSQLSPYLSIGVLSPRQCWNRLKE--EFVDLLIKPKSGAFSWLNELIWREFYRHLMAF 297 +G S LS +L G +S R+ E D + GA +WL+ELIWR+FY ++A Sbjct: 239 KGPSYLSVHLRFGTVSIRELARLAHEAAHNEDWSAAAREGAATWLSELIWRDFYFQILAH 298 Query: 298 YPSVCMGKPFIPWTEKIEWNKDSH---LLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLR 354 P V + + F P + IEW + L AW +G TG+P++DAAMRQLN+ G+MHNRLR Sbjct: 299 QPYV-VERSFKPAYDAIEWETGAEADPLFAAWCEGRTGYPLVDAAMRQLNSSGYMHNRLR 357 Query: 355 MITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQ 414 M+TASFLVKDL +DWR GE YF +L D DLA+NNGGWQWAASTG D+ P+FRIFNP Q Sbjct: 358 MVTASFLVKDLGLDWRRGEAYFAEKLNDFDLAANNGGWQWAASTGCDAQPWFRIFNPVTQ 417 Query: 415 GKRFDPQGTFIRHWLPELNNVPTQYIHAPH--SWLDKND----LSLNYPLPIVDHKKACH 468 ++FDP G FI ++PE+ +P++ HAP L+ + L +YPLP+VDH A Sbjct: 418 SEKFDPDGKFIARYVPEVAQLPSKLRHAPWLAKPLELAEAGIALGRDYPLPVVDHAAARE 477 Query: 469 HTLNQYYAAKKQS 481 TL +Y KK++ Sbjct: 478 KTLARYGILKKEA 490 >gi|209525318|ref|ZP_03273859.1| Deoxyribodipyrimidine photo-lyase [Arthrospira maxima CS-328] gi|209494169|gb|EDZ94483.1| Deoxyribodipyrimidine photo-lyase [Arthrospira maxima CS-328] Length = 474 Score = 412 bits (1059), Expect = e-113, Method: Composition-based stats. Identities = 167/476 (35%), Positives = 244/476 (51%), Gaps = 16/476 (3%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 L W R DLRI+DN L AA ++V+ VF P I+ + ++ L +Q+ Sbjct: 6 LFWHRRDLRISDNWGL-AAARRVTSQVVGVFCLDPAILSGDDIAPVRVAYMIGCLQCLQR 64 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130 + G Q D+ + L + +++N+ E +RD+ +E+ L Sbjct: 65 DYQRGGSQLLIIQ----DNPAQGLRKLAVALGAIAVYWNQDVEPLPRQRDRSVEESLTEV 120 Query: 131 VI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADL-----RSLPVPAIRL 184 I ++F D VL P +I + + YKVYTP+ + IQ R L + Sbjct: 121 GIKVETFWDQVLHSPEAIFTGSKEPYKVYTPYWRKWIQQPKPEPCDTLKSRGLTEAQEKA 180 Query: 185 TGPVTPSNIPRFFDYPFQAIDP-MFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS 243 +P D F +P + GE A L+ FC +Y Y + R+ PAI GTS Sbjct: 181 AREAGAIALPTAKDLGFIWSEPFILEPGETAASDRLQLFCDRAIYEYDQGRNFPAIDGTS 240 Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFV-DLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVC 302 LSP L G + R W + +E + + +W E+ WREFY+ + +P++ Sbjct: 241 LLSPALRFGAIGIRTLWQKTQEIMALTRSDEARDHIQTWQQEIAWREFYQQALYHFPALA 300 Query: 303 MGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLV 362 G F ++ W+ + QAW QG TG+PI+DAAMRQLN GWMHNR RMI ASFL Sbjct: 301 TG-AFRQPFDRFPWSDNQEHFQAWCQGRTGYPIVDAAMRQLNETGWMHNRCRMIVASFLT 359 Query: 363 KDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQG 422 KDL+++W+ GE+YFM +L+DGDLASNNGGWQW++S+G D P RIFNP Q +++DP+ Sbjct: 360 KDLIINWQWGEKYFMQRLIDGDLASNNGGWQWSSSSGMDPKP-LRIFNPASQAQKYDPEA 418 Query: 423 TFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478 +IR WLPEL N+ T ++ + + YP PIVDH + + Y K Sbjct: 419 EYIRQWLPELRNLETAHLVT-GKISSSDRQACGYPQPIVDHNQQQKLFKSIYSQLK 473 >gi|288958781|ref|YP_003449122.1| deoxyribodipyrimidine photo-lyase [Azospirillum sp. B510] gi|288911089|dbj|BAI72578.1| deoxyribodipyrimidine photo-lyase [Azospirillum sp. B510] Length = 504 Score = 412 bits (1058), Expect = e-113, Method: Composition-based stats. Identities = 167/499 (33%), Positives = 249/499 (49%), Gaps = 28/499 (5%) Query: 1 MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAK---VIAVFIATPEQWRQHGISARQ 57 M A + +VW RNDLR+ DN AL AA + + VI ++I E + Q Sbjct: 12 MSTAIAPPI-IVWFRNDLRLADNPALTAAAQMAGERGGAVIPLYILEEETGDPWTLGGAQ 70 Query: 58 SHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEV 117 +++ SL ++ ++ G + + LD+ + + +NR+Y + Sbjct: 71 RWWLHGSLERLATCCARHGSPLVLRRG----EPAAVLDALIAETGAGCVLWNRRYAPAQT 126 Query: 118 RRDKLLEKRLQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRS 176 RD +++ L+ R I +SF+ +L P ++ N + +KV+TPF + L L Sbjct: 127 ARDAAIKQGLKARGIDARSFNAGLLAEPWTVRNKSGGSFKVFTPFWRHLSATLTPPPPTR 186 Query: 177 LPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFP--------IGEQNALHILRKFCKEKVY 228 L P T + P + GE AL L F V Sbjct: 187 A---PAALKAPATAPAGDALEGWGLPPTAPDWAAGLRKRWVPGETAALSHLADFLDGPVG 243 Query: 229 YYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWR 288 Y +RD P GTS LSP+L+ G + PRQ W+ + + +G +L E+ WR Sbjct: 244 VYATERDRPDRHGTSTLSPHLAFGEIGPRQVWHAARHAAE-ARPELAAGIDFFLREVGWR 302 Query: 289 EFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGW 348 EF HL+ P + +P P W +D+ LQAW++G TG+PI+DA MRQL GW Sbjct: 303 EFQYHLLHHAPELPE-RPLDPRFADFPWREDAAGLQAWRRGRTGYPIVDAGMRQLWETGW 361 Query: 349 MHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRI 408 MHNR+RMI ASFLVKDLL+ W+ GE +F L+D DLA N G WQW A G D+ P+FR+ Sbjct: 362 MHNRVRMIVASFLVKDLLLPWQEGERWFWDTLVDADLAQNAGNWQWVAGCGADAAPFFRV 421 Query: 409 FNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDK------NDLSLNYPLPIVD 462 FNP +QG++FDP G ++R ++PEL+ +P ++IH P + + L +YP PI+D Sbjct: 422 FNPVLQGEKFDPDGDYVRRYVPELDRLPPRWIHQPWTAPTEILRQAGIRLGADYPRPILD 481 Query: 463 HKKACHHTLNQYYAAKKQS 481 H A L Y K ++ Sbjct: 482 HGAARDRALALYNERKAKA 500 >gi|300864867|ref|ZP_07109715.1| deoxyribopyrimidine photolyase [Oscillatoria sp. PCC 6506] gi|300337160|emb|CBN54865.1| deoxyribopyrimidine photolyase [Oscillatoria sp. PCC 6506] Length = 482 Score = 412 bits (1058), Expect = e-113, Method: Composition-based stats. Identities = 165/482 (34%), Positives = 237/482 (49%), Gaps = 22/482 (4%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 L W R DLRI+DN L AA H S KV+ +F ++ ++ + ++ L ++Q+ Sbjct: 6 LFWHRRDLRISDNIGLAAARHLSQ-KVVGIFCLDFNILQRDDVAPARVAYMIGCLQELQR 64 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130 + G Q + + + + + +F+N E RD + L+ Sbjct: 65 RYLEAGSQLLILQA----EPTQGIPKLAIALQAKAVFWNLDVEPYSRERDDAVSNALKQA 120 Query: 131 VI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189 I ++F D +L P I Y VYTPF K + + +LP+ ++ +T Sbjct: 121 GIKVENFWDQLLHAPDEIRTGMGTKYTVYTPFWKNWVSKPKAEPVDTLPIMSLEQLTGLT 180 Query: 190 PSN-----------IPRFFDYPFQAIDPMF-PIGEQNALHILRKFCKEKVYYYVEQRDIP 237 +P + F P+ GE A L FC +Y Y +QR+ P Sbjct: 181 AKEQEIAKLSGTIRLPSAKELGFVWNAPLIIEPGEDGAQEKLDDFCDRAIYDYDKQRNFP 240 Query: 238 AIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKS-GAFSWLNELIWREFYRHLMA 296 A+ GTSQLS L G + R W + +W EL WREFY+H M Sbjct: 241 ALDGTSQLSAALKFGAIGIRTVWQATVTVMEKCHTEAARINIQTWQQELAWREFYQHAMY 300 Query: 297 FYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMI 356 +P + G + + W+ + L QAW +G TG+PIIDAAMRQ+N GWMHNR RMI Sbjct: 301 NFPELANG-AYREAFKDFPWDNNQELFQAWCEGKTGYPIIDAAMRQMNQTGWMHNRCRMI 359 Query: 357 TASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGK 416 ASFL KDL+++W+ GE+YFM L+DGDL++NNGGWQW+AS+G D P RIFNP QG+ Sbjct: 360 VASFLTKDLIINWQWGEKYFMQNLIDGDLSANNGGWQWSASSGMDPKP-LRIFNPFTQGQ 418 Query: 417 RFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYA 476 +FDP+ +IR W+PEL + T + A S+ YP PIVDH + Y Sbjct: 419 KFDPKSEYIRKWVPELRWIDTASLLA-GKITPIERRSIGYPEPIVDHNQQQRRFKELYKQ 477 Query: 477 AK 478 K Sbjct: 478 QK 479 >gi|170079382|ref|YP_001736020.1| deoxyribopyrimidine photolyase [Synechococcus sp. PCC 7002] gi|169887051|gb|ACB00765.1| deoxyribopyrimidine photolyase [Synechococcus sp. PCC 7002] Length = 477 Score = 412 bits (1058), Expect = e-113, Method: Composition-based stats. Identities = 170/480 (35%), Positives = 243/480 (50%), Gaps = 17/480 (3%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 L W R DLR+ DN AL A S AKV+ +F P + ++ + ++ A L ++ + Sbjct: 6 LHWHRRDLRLQDNVALAEARQQS-AKVVGIFCLDPAILEKEDVAPARVKYLLACLAELAE 64 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130 + + G Q + +E L +V +++N E +RD + L+ Sbjct: 65 NYQKAGSQLLIFQG----NPLEVLPKVAESLKVHTVYWNLDVEPYAQQRDHQMAIALRQV 120 Query: 131 VI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVP------AIR 183 ++F D +L PG + + + Y VY+PF K Q A + +L + Sbjct: 121 GAKIETFWDQLLHAPGKVFTQSKKPYSVYSPFWKNWSQKSKAAPVTALRDCQGLSDAEQK 180 Query: 184 LTGPVTPSNIPRFFDYPFQAIDP-MFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGT 242 L + +P D F P P+GE +L L +F + + Y R+ PA GT Sbjct: 181 LAKDLGAIALPTLADLGFSWDKPFTVPVGETASLGQLDRFTENFIEKYDGDRNFPATDGT 240 Query: 243 SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIK-PKSGAFSWLNELIWREFYRHLMAFYPSV 301 S+LS L G + R W + K ++G +W EL WREFY+H + F+P + Sbjct: 241 SRLSAALKFGAIGIRTVWQATETALNHCRSKEAEAGVITWQQELAWREFYQHCLFFFPEL 300 Query: 302 CMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFL 361 G P+ + W D QAW G TG+PIIDAAMRQLN GWMHNR RMI ASFL Sbjct: 301 AQG-PYREEFKDFPWENDEEKFQAWCAGQTGYPIIDAAMRQLNETGWMHNRCRMIVASFL 359 Query: 362 VKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQ 421 KDL++DWR GE+YFM L+DGDLA+NNGGWQW+AS+G D P RIFNP Q ++FDP+ Sbjct: 360 TKDLIIDWRWGEKYFMQTLVDGDLAANNGGWQWSASSGMDPKP-LRIFNPYTQAQKFDPE 418 Query: 422 GTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481 +IRHWLPEL+ + TQ + +YP PIV+H+ Y K ++ Sbjct: 419 ADYIRHWLPELSGLDTQVLLTGQIPRLLCQ-QHDYPEPIVEHRVRQREFKRLYKLVKDKA 477 >gi|254504495|ref|ZP_05116646.1| deoxyribodipyrimidine photolyase family [Labrenzia alexandrii DFL-11] gi|222440566|gb|EEE47245.1| deoxyribodipyrimidine photolyase family [Labrenzia alexandrii DFL-11] Length = 478 Score = 412 bits (1058), Expect = e-113, Method: Composition-based stats. Identities = 161/484 (33%), Positives = 247/484 (51%), Gaps = 28/484 (5%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIA-TPEQWR-QHGISARQSHFIYASLL 66 +VW R DLR++DN AL+ A V+ V+I TP+Q +H + +++ SL Sbjct: 2 TTIVWFRQDLRVSDNPALHEATRRG--PVLPVYILETPDQSGDEHPLGGASRWWLHHSLA 59 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 +++ L G+VF + + + +++NR YE + + RD L++ Sbjct: 60 ALKEDLP--GLVFLRGSARH------LIPELVQETGADAVYWNRCYEPHAIERDSALKES 111 Query: 127 LQ-HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185 L+ + KSF S+L P + YKVY+PF KA + V L + I T Sbjct: 112 LKTDLIDAKSFKASLLFEPWDVETKTGGPYKVYSPFWKAAQKISVPDPLPAP--AEINFT 169 Query: 186 GPVTPSNIPRFFDYPF-----QAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ 240 N+ P + + ++ G A L +F + Y ++R+ P + Sbjct: 170 AYDRGDNLSDLELLPTKPNWAEGWEDIWQPGAAGAKDRLIEFLDHGLSGYGDKRNRPDLP 229 Query: 241 GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPS 300 S+LSP+L G +SP+Q W+ + S +L+E+ WREF HL+ YP Sbjct: 230 NVSRLSPHLHFGDISPKQVWSA-TQHATARKSSLSSDGHKFLSEIAWREFSYHLLYHYPQ 288 Query: 301 VCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASF 360 + K + P + W + L+ W+ G TG+P++DA MR+L G+MHNR+RM+ SF Sbjct: 289 LPE-KNWRPAFDAYPWRESEEDLKKWQTGLTGYPMVDAGMRELWHTGYMHNRVRMLAGSF 347 Query: 361 LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDP 420 LVK L + W+ GE +F L+D DLA+N+ WQW A +G D+ PYFRIFNP QG +FDP Sbjct: 348 LVKHLRLHWKHGEAWFRDTLVDADLANNSASWQWVAGSGADAAPYFRIFNPISQGPKFDP 407 Query: 421 QGTFIRHWLPELNNVPTQYIH----APHSWLDKNDLSLN--YPLPIVDHKKACHHTLNQY 474 G ++R W+PEL +PT+++ AP S L + + L YP PIVDH KA L+ Y Sbjct: 408 DGKYVRRWVPELAKLPTKHLFSPFEAPASVLSEAGVRLGETYPYPIVDHGKARQAALDGY 467 Query: 475 YAAK 478 K Sbjct: 468 EDVK 471 >gi|313674183|ref|YP_004052179.1| deoxyribodipyrimidine photo-lyase [Marivirga tractuosa DSM 4126] gi|312940881|gb|ADR20071.1| Deoxyribodipyrimidine photo-lyase [Marivirga tractuosa DSM 4126] Length = 433 Score = 412 bits (1058), Expect = e-113, Method: Composition-based stats. Identities = 161/472 (34%), Positives = 226/472 (47%), Gaps = 47/472 (9%) Query: 8 SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQ-HGISARQSHFIYASLL 66 + + W R DLR+ DN ALY A + V+ +FI E S + +FI+ L Sbjct: 3 KISIFWFRRDLRLYDNTALYYAIQE-NIPVLPLFIFDSEILDDLKDKSDARVNFIHDQLT 61 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 ++ L + G E S + + +F NR YE + RD+ ++ Sbjct: 62 EINDQLKKIGSGVLIKHGKPE----EVYKSLIKEYNIQAVFTNRDYEPYALERDQKIDNI 117 Query: 127 LQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185 LQ + I F D V+ IL + YKV+TPF+ ++ L + + Sbjct: 118 LQQKGIGFYDFKDHVIFEKDEILTGGNEPYKVFTPFKNKWLEKLESGHIHPYEIHLTAEN 177 Query: 186 GPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245 IP + F+ D P E + + Y ++RD PA GTS+L Sbjct: 178 FFQFEPEIPTLDEIGFRESDVPIPKKEYE---------ESTIQKYDQERDFPAKNGTSRL 228 Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305 +L G +S R+ ++ +WLNELIWR+FY ++A +P V Sbjct: 229 GIHLRFGTISIREAVAHAQKLN-----------DTWLNELIWRDFYSMILANFPHVVK-N 276 Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365 F + I W Q W G TG+PI+DA MR+LN G+MHNR+RMI ASFL K L Sbjct: 277 AFKAKYDAIPWRNSKEDFQKWCAGKTGYPIVDAGMRELNETGYMHNRVRMIVASFLTKHL 336 Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425 L+DWR GE YF +LLD +LASNNGGWQWAA TG D+ PYFRIFNP Q +FD +I Sbjct: 337 LIDWRWGEAYFAEKLLDYELASNNGGWQWAAGTGTDAQPYFRIFNPYSQTDKFDKNKAYI 396 Query: 426 RHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477 + W+PE+N + +YP P+VDHKKA L+ Y +A Sbjct: 397 KKWIPEIN-------------------TSDYPEPMVDHKKARQRALDTYKSA 429 >gi|294085609|ref|YP_003552369.1| deoxyribodipyrimidine photo-lyase [Candidatus Puniceispirillum marinum IMCC1322] gi|292665184|gb|ADE40285.1| Deoxyribodipyrimidine photo-lyase [Candidatus Puniceispirillum marinum IMCC1322] Length = 477 Score = 412 bits (1058), Expect = e-113, Method: Composition-based stats. Identities = 159/485 (32%), Positives = 243/485 (50%), Gaps = 24/485 (4%) Query: 6 AMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASL 65 A S+ + W R DLR+ DN +L AA D V+ +FI + H A +++ +L Sbjct: 2 ASSIIIHWFRQDLRLADNPSLVAAAQAGD--VLPLFILDDDNAGDHKTGAAGRSWLHHAL 59 Query: 66 LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125 + SL K V + D ++ + + + +F+NR YE + RDK+L+ Sbjct: 60 NALNMSLDGKLCVMR-------GDPVDIIPKLVAKVGASGVFWNRCYEPWRIARDKMLKT 112 Query: 126 RL-QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL 184 L + + +SF+ S+L P ++L Y+V+TPF + N L A++L Sbjct: 113 NLTNNNIQVESFNGSLLWEPWTVLKGDGTPYRVFTPFYRRGCLNAAPPRLPLARPDAMQL 172 Query: 185 TGPVTPS----NIPRFFDYPFQA-IDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAI 239 S + D+ + A + + IGE A+ L F + + Y + R+ PA Sbjct: 173 VADPESSMSIDALNLLPDHDWGAKMASHWQIGEAAAMTRLHDFVEGGLNGYKDGRNFPAR 232 Query: 240 QGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYP 299 TS+LS +L G +SP W E+ +L+EL WREF L+ +P Sbjct: 233 PHTSRLSAHLHWGEISPNMAWYAAIEKRDQAGFDN--DIDVFLSELGWREFSHSLLYHFP 290 Query: 300 SVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITAS 359 + P + W D + L+AW+QG TG+PIIDA MR+L G+MHNR+RMI S Sbjct: 291 HLPRQN-LQPKFDSFPWQSDDNALRAWQQGKTGYPIIDAGMRELWETGYMHNRVRMIVGS 349 Query: 360 FLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFD 419 FLVK+LL+ W GE +F L+D DLA+N+ GWQW A G D+ PYFR+FNP QG +FD Sbjct: 350 FLVKNLLLHWHHGEAWFWDCLVDADLANNSAGWQWIAGCGADAAPYFRVFNPITQGTKFD 409 Query: 420 PQGTFIRHWLPELNNVPTQYIHAPHSWLDKN------DLSLNYPLPIVDHKKACHHTLNQ 473 G++ R ++PEL +P +Y+ +P L +YP PIVD K++ L Sbjct: 410 ADGSYTRRFVPELATLPNKYLFSPWEAPALELQAAGITLGKDYPNPIVDVKRSREAALAA 469 Query: 474 YYAAK 478 + + Sbjct: 470 FATTR 474 >gi|121594169|ref|YP_986065.1| deoxyribodipyrimidine photo-lyase type I [Acidovorax sp. JS42] gi|120606249|gb|ABM41989.1| deoxyribodipyrimidine photo-lyase type I [Acidovorax sp. JS42] Length = 488 Score = 412 bits (1058), Expect = e-113, Method: Composition-based stats. Identities = 177/495 (35%), Positives = 252/495 (50%), Gaps = 36/495 (7%) Query: 1 MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGI-SARQSH 59 M A+ LVWLR DLR D+ ALY A + +V VF+ + R+ Sbjct: 1 MPAS-----ALVWLRRDLRCHDHAALYHALRRFE-RVYCVFVFDTDILDALPTRCDRRVE 54 Query: 60 FIYASLLQVQKSLSQK-------GIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQY 112 FI+AS+ + + L G + +++ + V ++ NR Y Sbjct: 55 FIHASVCALDEDLRALAARSGAPGGGLIVRHGT----AVQCIVQLARSLGVREVLANRDY 110 Query: 113 EINEVRRDKLLEKRLQHRVICKS-FDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQ 171 E + RD+ + L I S + D VLL G +LN Q Y V+TP+++ +Q L Sbjct: 111 EPAALARDRRVADGLAACGIAFSDYKDQVLLEQGEVLNQQGQPYSVFTPYKRTWLQKLDA 170 Query: 172 ADLRSLPV--PAIRLTGPVTPSNIPRFFDYPFQAI---DPMFPIGEQNALHILRKFCKEK 226 + PV A L P +P D F D P+G + A +L+ F + Sbjct: 171 FQTKPYPVERHAQHLAVPPAGERLPTLADLGFVPTNLADLQLPVGSRGAQQLLQDFLP-R 229 Query: 227 VYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELI 286 + Y RD P +G S LS +L G +S RQ + + GA +WL+EL Sbjct: 230 MAAYKLARDFPGRKGVSYLSVHLRFGTVSIRQLASLAARQAAQ----GCQGAQTWLSELA 285 Query: 287 WREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTI 346 WR+FY ++ +P V + F P ++++W+ QAW TG+P++DAAMRQL Sbjct: 286 WRDFYFMILWHHPHVVT-QAFRPEYDRVQWDDAPEYWQAWCAARTGYPLVDAAMRQLLQT 344 Query: 347 GWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYF 406 G+MHNRLRM+ ASFL KDL +DWR GE +F L D DLA+NNGGWQWAASTG D+ P+F Sbjct: 345 GYMHNRLRMVVASFLTKDLGIDWRRGERFFAQHLNDYDLAANNGGWQWAASTGCDAQPWF 404 Query: 407 RIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKN------DLSLNYPLPI 460 RIFNP Q ++FDP G FIR +LPEL VP +++H P L ++YPLP+ Sbjct: 405 RIFNPVAQSQKFDPDGRFIRRYLPELACVPDKHLHFPAGMKPLELQACGLRLGIDYPLPV 464 Query: 461 VDHKKACHHTLNQYY 475 VDH A TL +++ Sbjct: 465 VDHASARERTLMRFH 479 >gi|71280055|ref|YP_268123.1| deoxyribodipyrimidine photolyase [Colwellia psychrerythraea 34H] gi|71145795|gb|AAZ26268.1| deoxyribodipyrimidine photolyase [Colwellia psychrerythraea 34H] Length = 470 Score = 411 bits (1057), Expect = e-112, Method: Composition-based stats. Identities = 204/473 (43%), Positives = 283/473 (59%), Gaps = 13/473 (2%) Query: 11 LVWLRNDLRITDNKALYA-----ACHNSDAKVIA--VFIATPEQWRQHGISARQSHFIYA 63 L+WLRNDLR DN AL+ A D+ V A +F +QW+QH S + FI Sbjct: 2 LLWLRNDLRTHDNPALHYFLSRNALSQHDSAVPAKAIFFICEQQWQQHDWSPIKIDFIKR 61 Query: 64 SLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLL 123 + K L+ I + + NF +L SYC +T++ N + E NE +RDK L Sbjct: 62 HAHALVKELALLNIELELIELDNFTQQKTYLHSYCQLHNITEVVANSEVEFNEQQRDKAL 121 Query: 124 EKRLQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAI 182 L+ I + V++P G +LN + MYKV+TPF++A + + Q L ++ Sbjct: 122 YLELKASGIPLTLLEADVIVPKGKVLNQSGIMYKVFTPFKRAWLTYIQQGGFEYLGKVSV 181 Query: 183 RLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGT 242 + + N + +I +P+ IL KF ++K+ Y RDIP+I+GT Sbjct: 182 KSSAVNKADNQ----EEDQGSISSTWPLATVFEQQILPKFYQQKISTYKLNRDIPSIKGT 237 Query: 243 SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVC 302 S +SPYL+ GV+SPR L + DLL+ S FSWLNE+IWREFYRHL+ +C Sbjct: 238 SGISPYLAAGVISPRFVLRLLLNKHPDLLVASDSEEFSWLNEIIWREFYRHLLFHEQRLC 297 Query: 303 MGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLV 362 + + +++ W+ D+ L AW QG TG+P++DAAMRQLN GWMHNRLRM+ ASFL Sbjct: 298 KHQCYKENYQEMLWHNDAALFDAWCQGRTGYPLVDAAMRQLNQTGWMHNRLRMVVASFLT 357 Query: 363 KDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQG 422 K LL+DWR+GE+YFM L+DGDLASNNGGWQWAASTG D+ PYFRIFNP Q +RFDP+G Sbjct: 358 KHLLIDWRLGEKYFMQHLIDGDLASNNGGWQWAASTGCDAQPYFRIFNPIRQSERFDPKG 417 Query: 423 TFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYY 475 FIR ++PELNN+ + IH PH ++ N+L++ +P IV+HK+A L Y Sbjct: 418 VFIRKYIPELNNISDKAIHFPHQYIKDNELNIYWPA-IVEHKEARLKALAFYK 469 >gi|197336881|ref|YP_002158424.1| deoxyribodipyrimidine photo-lyase [Vibrio fischeri MJ11] gi|197314133|gb|ACH63582.1| deoxyribodipyrimidine photo-lyase [Vibrio fischeri MJ11] Length = 464 Score = 411 bits (1056), Expect = e-112, Method: Composition-based stats. Identities = 198/466 (42%), Positives = 265/466 (56%), Gaps = 11/466 (2%) Query: 18 LRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQKSLSQKGI 77 +R DN AL AA N A+F+ + QW++H + Q I L++++ L Q I Sbjct: 1 MRTIDNPALQAAVEN-QQPTFALFVYSESQWKKHNKAPIQIDLIKRRLVELKNELEQLNI 59 Query: 78 VFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHRVICKSFD 137 F + + + + V LF N++YE +E RD + + L C FD Sbjct: 60 PLIVISSPLFSEIPAKITALFSELSVNALFANKEYEHDERLRDTQVYESL-LNTNCSFFD 118 Query: 138 DSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPSNIPRFF 197 +LP G+I+N Q YKV+TPF+KA + Q L P + Sbjct: 119 AKCILPVGTIINRTQQPYKVFTPFKKAWKASFYQQQPHITKTERSVLCDPKLIEKLSLNN 178 Query: 198 DYPFQAIDP----MFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGV 253 D F + + + + + ILR+FC++KV Y RD P IQGTSQLSPYL+IG Sbjct: 179 DDSFTFLSSNESGSWTVSTKAIIDILRQFCRQKVSQYHNNRDYPEIQGTSQLSPYLAIGA 238 Query: 254 LSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEK 313 +S +QC RL ++ + G WL+ELIWREFY HL+ FYP++ + F+ + + Sbjct: 239 ISAKQCALRLH---LEANYELNQGEDIWLDELIWREFYTHLLHFYPNLSKNQAFLSYDKY 295 Query: 314 IEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGE 373 IEW+ + + W +G TGFPI+DAAM+QLNT GWMHNRLRMITASFLVKDL +DWR GE Sbjct: 296 IEWDNNLDNFERWCKGETGFPIVDAAMKQLNTTGWMHNRLRMITASFLVKDLHIDWRWGE 355 Query: 374 EYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELN 433 +YFMS+L+DGD ASNNGGWQW AS G DS PYFRIFNP QGK+FD TFI+HWLPEL Sbjct: 356 QYFMSKLIDGDFASNNGGWQWCASVGCDSSPYFRIFNPITQGKKFDADCTFIKHWLPELK 415 Query: 434 NVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479 + + IH P+ S NYP IVDH + + Y AK+ Sbjct: 416 ALSNKEIHHPN--PAPLLKSDNYPDQIVDHAQQRIKVIEVYKQAKQ 459 >gi|114570041|ref|YP_756721.1| deoxyribodipyrimidine photo-lyase type I [Maricaulis maris MCS10] gi|114340503|gb|ABI65783.1| deoxyribodipyrimidine photo-lyase type I [Maricaulis maris MCS10] Length = 499 Score = 410 bits (1054), Expect = e-112, Method: Composition-based stats. Identities = 170/494 (34%), Positives = 247/494 (50%), Gaps = 23/494 (4%) Query: 1 MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHF 60 M +++A + LVW R DLR+ DN AL+AA S ++ FI P+ Q + Sbjct: 1 MASSSATAAALVWFRRDLRLHDNPALWAAVR-SGRPLVCAFIDDPDAVAQLAPGRASRWW 59 Query: 61 IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120 ++ SL + +S+ Q+G + D+ L C + +++F+NR D Sbjct: 60 LHHSLAALSRSIRQRGGQLVLRRG----DTTSELVRLCGETGSSEVFWNRGDNPTRDSGD 115 Query: 121 KLLEKRLQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPV 179 L RL R + + F L P + LN + + Y+V+TPF KA ++ +LP Sbjct: 116 TALAARLADRGVKARGFASGTLFNPATHLNGSGKPYRVFTPFWKACLR--APEPSAALPA 173 Query: 180 PAIRLTGPVTPSNIPRFFDYPFQAID------PMFPIGEQNALHILRKFCKEKVYYYVEQ 233 P VT S+ + QA D + GE AL+ L F ++ Y + Sbjct: 174 PDRLPGAAVTASDNLEDWSLRPQAPDWASGFSQDWEPGEDGALNRLEAFLANELADYPQS 233 Query: 234 RDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRH 293 RD P GTS+LSP+L+ G +SPR W+ +++ G +L+EL WR+F + Sbjct: 234 RDRPDEDGTSRLSPHLAWGEISPRTIWHTVRDHAE--RGGSFQGGEKFLSELGWRDFAIY 291 Query: 294 LMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRL 353 L + S+ + F + W + L AWK+G TG PI+DA MRQL T GWMHNR+ Sbjct: 292 LAHHFGSL-RDENFNRQFDHFPWRSNPAGLDAWKRGQTGIPIVDAGMRQLWTTGWMHNRV 350 Query: 354 RMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTI 413 RMITASFL+K L V WR G +F L+D DL N WQW A +G D+ PYFRIFNP Sbjct: 351 RMITASFLIKHLGVHWRDGMAWFEDTLVDADLNVNAASWQWVAGSGADAAPYFRIFNPVT 410 Query: 414 QGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKN------DLSLNYPLPIVDHKKAC 467 QG+RFDPQG ++ W+PEL + + +HAP + L YP P+ D K Sbjct: 411 QGERFDPQGLYVHRWVPELTGLSGKAVHAPWTRPANELIAAGISLGQTYPAPVTDLKTGR 470 Query: 468 HHTLNQYYAAKKQS 481 L+ Y K ++ Sbjct: 471 EQALDAYQTMKARA 484 >gi|221065219|ref|ZP_03541324.1| Deoxyribodipyrimidine photo-lyase [Comamonas testosteroni KF-1] gi|220710242|gb|EED65610.1| Deoxyribodipyrimidine photo-lyase [Comamonas testosteroni KF-1] Length = 496 Score = 410 bits (1054), Expect = e-112, Method: Composition-based stats. Identities = 180/498 (36%), Positives = 258/498 (51%), Gaps = 23/498 (4%) Query: 4 TTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYA 63 T + V L+WLR DLR+ DN ALY A + K+ VF+ + R+ FI Sbjct: 2 TPSYPVGLIWLRRDLRLADNAALYHALQQCE-KLYCVFVFDDSILAALPRADRRVEFICQ 60 Query: 64 SLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLL 123 SL ++ +L + Q + + + + Q +F N E + RD + Sbjct: 61 SLAELDAALRETTGRPQTGLITRRGLPQDIIPALARQLGAGAVFCNDDDEPAALARDAQV 120 Query: 124 EKRLQHRV-ICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAI 182 + L+ + + F D + +L +L + V+TP++ A ++ + L + P Sbjct: 121 ARSLKSQGQLLLRFKDHRIFARDEVLTQSLSPFSVFTPYKNAWLRKITPFYLSAYPSERD 180 Query: 183 RLTGPVTPSN-----IPRFFDYPFQAIDPM---FPIGEQNALHILRKFCKEKVYYYVEQR 234 + + IP D F P G A +L F ++ Y R Sbjct: 181 LASKLADLPDTERRTIPSAADLGFAPDTLAGLRLPTGVSGARRLLADFLP-RLPQYKAAR 239 Query: 235 DIPAIQGTSQLSPYLSIGVLSPRQCWNRLKE--EFVDLLIKPKSGAFSWLNELIWREFYR 292 D PA++G S LS +L G +S R+ E D + GA +WL+ELIWR+FY Sbjct: 240 DFPALKGPSYLSVHLRFGTVSIRELARLAHEAAHHEDWSAAAREGAATWLSELIWRDFYF 299 Query: 293 HLMAFYPSVCMGKPFIPWTEKIEWNKDSH---LLQAWKQGYTGFPIIDAAMRQLNTIGWM 349 ++A P V + + F P + IEW + L AW +G TG+P++DAAMRQLNT G+M Sbjct: 300 QILAHQPYV-VERSFKPAYDAIEWETGAEADALFAAWCEGRTGYPLVDAAMRQLNTSGYM 358 Query: 350 HNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIF 409 HNRLRM+TASFLVKDL +DWR GE YF +L D DLA+NNGGWQWAASTG D+ P+FRIF Sbjct: 359 HNRLRMVTASFLVKDLGLDWRRGEAYFGEKLNDFDLAANNGGWQWAASTGCDAQPWFRIF 418 Query: 410 NPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPH--SWLDKND----LSLNYPLPIVDH 463 NP Q ++FDP+G FI ++PEL +P + HAP L+ + L +YPLP+VDH Sbjct: 419 NPVTQSEKFDPEGKFIVRYVPELTPLPAKLRHAPWLAKPLELAEAGIALGRDYPLPVVDH 478 Query: 464 KKACHHTLNQYYAAKKQS 481 A TL +Y KK+S Sbjct: 479 AAAREKTLARYGILKKES 496 >gi|153209159|ref|ZP_01947255.1| deoxyribodipyrimidine photolyase [Coxiella burnetii 'MSU Goat Q177'] gi|212218603|ref|YP_002305390.1| deoxyribodipyrimidine photolyase [Coxiella burnetii CbuK_Q154] gi|120575482|gb|EAX32106.1| deoxyribodipyrimidine photolyase [Coxiella burnetii 'MSU Goat Q177'] gi|212012865|gb|ACJ20245.1| deoxyribodipyrimidine photolyase [Coxiella burnetii CbuK_Q154] Length = 472 Score = 410 bits (1054), Expect = e-112, Method: Composition-based stats. Identities = 180/478 (37%), Positives = 264/478 (55%), Gaps = 24/478 (5%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 + W R DLR++DN AL A ++D +I ++I + + Q ++Y SL + Sbjct: 2 TTIFWFRQDLRLSDNPALVEAAKSAD-HLIPLYILDDQL---KMLVDAQRWWLYHSLSSL 57 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128 Q +LS+KG + D+ L + +V K+++NR YE D LE RL Sbjct: 58 QTALSKKGTSLILKKG----DTKRVLLELIKKYKVEKIYWNRSYEPPYREIDTYLENRLP 113 Query: 129 HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVP-----AIR 183 + + + ++L P I N + YK++TPF K + +L + P AI+ Sbjct: 114 P-LSVEIYHSTLLTEPQKIKNKSGGYYKIFTPFWKHINASLQPRKTLAAPKKFSQHRAIK 172 Query: 184 LTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS 243 T + +P+ D+ Q D + GE+NA +L+KF KE + Y RD P I TS Sbjct: 173 SDNLETWNLLPKHPDWS-QGFDQ-WKPGEKNAQIVLKKFIKENLKNYPAHRDRPDISSTS 230 Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCM 303 LSPYL G +S RQ W + + + + A +L +LIWREF +L+ +P + Sbjct: 231 HLSPYLHFGEISIRQVWTAITQATIQ-DKNLQKAADVFLRQLIWREFAYYLLWHFPQMGK 289 Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363 F + +W K+ + L+AW++ TG+PI+DA MR+L G+MHNR+RMI ASFLVK Sbjct: 290 SN-FRNQFDNFKWKKNKNWLRAWQKWLTGYPIVDAGMRELWCTGYMHNRVRMIVASFLVK 348 Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423 DL++DWR GE++F + LLD DLA+N GWQW A G D+ PYFRIFNP +Q K+FDP GT Sbjct: 349 DLMIDWREGEKWFWNTLLDADLANNALGWQWIAGCGPDAAPYFRIFNPILQSKKFDPDGT 408 Query: 424 FIRHWLPELNNVPTQYIHAPHSWLD------KNDLSLNYPLPIVDHKKACHHTLNQYY 475 +I+ W+PEL VP++YIH P D K +L ++YP PIV+H KA L Y Sbjct: 409 YIKRWIPELAKVPSKYIHYPADMPDNISESSKVNLGVDYPFPIVNHHKAKELALKAYK 466 >gi|264680117|ref|YP_003280026.1| DNA photolyase, FAD-binding protein [Comamonas testosteroni CNB-2] gi|262210632|gb|ACY34730.1| DNA photolyase, FAD-binding protein [Comamonas testosteroni CNB-2] Length = 512 Score = 410 bits (1053), Expect = e-112, Method: Composition-based stats. Identities = 178/500 (35%), Positives = 257/500 (51%), Gaps = 23/500 (4%) Query: 2 KATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFI 61 T + V L+WLR DLR+ DN ALY A + K+ VF+ + R+ FI Sbjct: 16 SMTPSYPVGLIWLRRDLRLADNAALYHALQQCE-KLYCVFVFDDSILAALPRADRRVEFI 74 Query: 62 YASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDK 121 SL ++ +L + Q + + + + Q +F N E + RD Sbjct: 75 CQSLTELAAALRETAGRPQTGLITRRGLPQDIIPALARQLGAGAVFCNDDDEPAAIARDA 134 Query: 122 LLEKRLQHRV-ICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVP 180 + + L+ + + F D + +L +L + V+TP++ A ++ + L + P Sbjct: 135 QVARSLKSQGQLLLRFKDHRIFARDEVLTQSLSPFSVFTPYKNAWLRKITPFYLSAYPSE 194 Query: 181 AIRLTGPVTPSN-----IPRFFDYPFQAIDPM---FPIGEQNALHILRKFCKEKVYYYVE 232 + + IP D F P G A +L F ++ Y Sbjct: 195 RDLASKLADLPDTERRPIPSAADLGFAPDTLAGLRLPTGVSGARQLLADFLP-RLPQYKT 253 Query: 233 QRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKE--EFVDLLIKPKSGAFSWLNELIWREF 290 RD PA++G S LS +L G +S R+ E D + GA +WL+ELIWR+F Sbjct: 254 ARDFPALKGPSYLSVHLRFGTVSIRELARLAHEAAHNEDWSAAAREGAATWLSELIWRDF 313 Query: 291 YRHLMAFYPSVCMGKPFIPWTEKIEWNKDSH---LLQAWKQGYTGFPIIDAAMRQLNTIG 347 Y ++A P V + + F P + IEW + L AW +G TG+P++DAAMRQLN+ G Sbjct: 314 YFQILAHQPYV-VERSFKPAYDAIEWETGAEADTLFAAWCEGRTGYPLVDAAMRQLNSSG 372 Query: 348 WMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFR 407 +MHNRLRM+TASFLVKDL +DWR GE YF +L D DLA+NNGGWQWAASTG D+ P+FR Sbjct: 373 YMHNRLRMVTASFLVKDLGLDWRRGEAYFAEKLNDFDLAANNGGWQWAASTGCDAQPWFR 432 Query: 408 IFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPH--SWLDKND----LSLNYPLPIV 461 IFNP Q ++FDP G FI ++PEL +P + HAP L+ + L +YPLP+V Sbjct: 433 IFNPVTQSEKFDPDGKFIVRYVPELTPLPAKLRHAPWLAKPLELAEAGITLGRDYPLPVV 492 Query: 462 DHKKACHHTLNQYYAAKKQS 481 DH A TL +Y KK++ Sbjct: 493 DHAAAREKTLARYGILKKEA 512 >gi|126665160|ref|ZP_01736143.1| Deoxyribodipyrimidine photolyase [Marinobacter sp. ELB17] gi|126630530|gb|EBA01145.1| Deoxyribodipyrimidine photolyase [Marinobacter sp. ELB17] Length = 488 Score = 410 bits (1053), Expect = e-112, Method: Composition-based stats. Identities = 192/489 (39%), Positives = 266/489 (54%), Gaps = 22/489 (4%) Query: 9 VHLVWLRNDLRITDNKALYAACHNS----DAKVIAVFIATPEQWRQHGISARQSHFIYAS 64 LVW RNDLR DN AL AAC ++ V A FI T EQW H SA + H + Sbjct: 2 TQLVWFRNDLRAADNPALAAACQSAAQSSGEPVEACFIVTTEQWLSHDWSAAKVHLMLDH 61 Query: 65 LLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLE 124 + + L++ GI + + ++F+ S+ L+++C +++++ +N +Y +NE RRDK L+ Sbjct: 62 ADALAQELAKLGIALSFLRAADFEQSLSTLEAFCRDHKISQVHFNEEYGVNERRRDKALK 121 Query: 125 KRLQH-RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIR 183 R V + D +P G +L + Y V+TPF + + L VP Sbjct: 122 PRFDTLGVKVSKYRDQAAVPVGEVLTQQSEPYSVFTPFSRRWRSWQEEQQPALLAVPKKV 181 Query: 184 LTGPVTPSNIPRFFDYPFQAIDPMF--------PIGEQNALHILRKFCKEKVYYYVEQRD 235 + +D +F GE A L+ F +E+ Y RD Sbjct: 182 GEALAGADVKNSSSVILKKEVDALFGEAPPALVATGENAAHDALQDFLQERAGDYKNDRD 241 Query: 236 IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDL------LIKPKSGAFSWLNELIWRE 289 PAI+GTS+LSPYL+IG LS RQC + + + G F+W EL WR+ Sbjct: 242 FPAIEGTSKLSPYLAIGALSGRQCVQAAWQLKQSMGSSFGKAANDEEGFFTWETELAWRD 301 Query: 290 FYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWM 349 FY H++ P V M + F P TE ++WN +AWK G TG P++DAAMRQLN WM Sbjct: 302 FYIHILYHCPRVSMHRAFKPETEALQWNTADEHFEAWKNGRTGIPMVDAAMRQLNETSWM 361 Query: 350 HNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIF 409 HNRLRM+ A FL K+L +DWR GE YFMS+L DG LASNNGGWQW+ASTG D+ PYFR+F Sbjct: 362 HNRLRMVAAMFLTKNLFIDWRRGEAYFMSKLADGYLASNNGGWQWSASTGTDASPYFRVF 421 Query: 410 NPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHH 469 NP QG+RFD G FIRHW+PEL + ++ IH P + YP PIVD K++ Sbjct: 422 NPMTQGERFDADGEFIRHWVPELAKLDSKRIHNPGK---GGVIPGGYPRPIVDLKESRKE 478 Query: 470 TLNQYYAAK 478 + ++ A + Sbjct: 479 AIARFQALR 487 >gi|222111113|ref|YP_002553377.1| deoxyribodipyrimidine photo-lyase [Acidovorax ebreus TPSY] gi|221730557|gb|ACM33377.1| Deoxyribodipyrimidine photo-lyase [Acidovorax ebreus TPSY] Length = 488 Score = 410 bits (1053), Expect = e-112, Method: Composition-based stats. Identities = 179/495 (36%), Positives = 253/495 (51%), Gaps = 36/495 (7%) Query: 1 MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGI-SARQSH 59 M A+ LVWLR DLR D+ ALY A + +V VF+ + R+ Sbjct: 1 MPAS-----ALVWLRRDLRCHDHAALYHALRRFE-RVYCVFVFDTDILDALLTRCDRRVE 54 Query: 60 FIYASLLQVQKSLSQK-------GIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQY 112 FI+AS+ + + L G + +++ + V ++ NR Y Sbjct: 55 FIHASVCALDEDLRALAARSGAPGGGLIVRHGT----AVQCIVQLARSLGVREVLANRDY 110 Query: 113 EINEVRRDKLLEKRLQHRVICKS-FDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQ 171 E + RD+ + L I S + D VLL G +LN Q Y V+TP+++ +Q L Sbjct: 111 EPAALARDRRVADGLAACGIAFSDYKDQVLLEQGEVLNQLGQPYSVFTPYKRTWLQKLDA 170 Query: 172 ADLRSLPV--PAIRLTGPVTPSNIPRFFDYPFQAI---DPMFPIGEQNALHILRKFCKEK 226 + PV A L P +P D F A D P+G + A +L+ F Sbjct: 171 FQTKPYPVERHAHHLAVPPAGERLPTLADLGFVATNLADLQLPVGSRGAQQLLQDFLPH- 229 Query: 227 VYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELI 286 + Y RD P +G S LS +L G +S RQ + + GA +WL+EL Sbjct: 230 MAAYKLARDFPGRKGVSYLSVHLRFGTVSIRQLASLAARQAAQ----GCEGAQTWLSELA 285 Query: 287 WREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTI 346 WR+FY ++ +P V + F P ++++W+ QAW TG+P++DAAMRQL Sbjct: 286 WRDFYFMILWHHPHVVT-QAFRPEYDRVQWDDAPEYWQAWCAARTGYPLVDAAMRQLLQT 344 Query: 347 GWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYF 406 G+MHNRLRM+ ASFL KDL +DWR GE +F L D DLA+NNGGWQWAASTG D+ P+F Sbjct: 345 GYMHNRLRMVVASFLTKDLGIDWRRGERFFAQHLNDYDLAANNGGWQWAASTGCDAQPWF 404 Query: 407 RIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKN------DLSLNYPLPI 460 RIFNP Q ++FDP G FIR +LPEL VP +++H P S L ++YPLP+ Sbjct: 405 RIFNPVAQSQKFDPDGRFIRRYLPELACVPDKHLHFPASMKPLELQACGLRLGIDYPLPV 464 Query: 461 VDHKKACHHTLNQYY 475 VDH A TL +++ Sbjct: 465 VDHASARERTLMRFH 479 >gi|121606238|ref|YP_983567.1| deoxyribodipyrimidine photo-lyase [Polaromonas naphthalenivorans CJ2] gi|120595207|gb|ABM38646.1| deoxyribodipyrimidine photo-lyase type I [Polaromonas naphthalenivorans CJ2] Length = 477 Score = 409 bits (1052), Expect = e-112, Method: Composition-based stats. Identities = 169/486 (34%), Positives = 248/486 (51%), Gaps = 26/486 (5%) Query: 12 VWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQKS 71 +W R DLR+ DN AL+ A + + +V F+ + R+ FI SL+ + + Sbjct: 1 MWFRRDLRLQDNAALHHALKSCE-QVFCAFVFDRAILDSLPKADRRVEFIRESLVDLNRQ 59 Query: 72 LSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ-HR 130 L++ + +++ L + + V +F N E + RD ++ L+ Sbjct: 60 LAKLALP--AGLLIRHGTALDALPALASRLSVDAVFANHDDEPCSLARDAEVQGLLECAG 117 Query: 131 VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTP 190 V +F D V+ +L A Q Y V+TP++KA ++ + L+ PV P Sbjct: 118 VAFHTFKDHVIFERQEVLTLAGQPYTVFTPYKKAWLKKVDAFYLQPYPVEKYASALAARP 177 Query: 191 SNIPR----FFDYPFQAIDP---MFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS 243 ++ + + F+ + P G Q A + F +++ +Y + RD PA++G S Sbjct: 178 ADERQDVPALAELGFEKTNLSALRLPTGSQGAEALFDDFL-DRMPHYADTRDFPAVKGPS 236 Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCM 303 L +L G +S R+ + GA +WL+ELIWR+FY ++A +P Sbjct: 237 YLGVHLRFGTISIRKITLNALAQQQ----TGSEGAATWLSELIWRDFYAQILANFPHAA- 291 Query: 304 GKPFIPWTEKIEWNKDSH---LLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASF 360 F P + I W + L QAW +G TG+P++DAAM QLN G+MHNRLRM+TASF Sbjct: 292 SSAFKPGYDAIAWEQGEKAELLFQAWCEGRTGYPLVDAAMAQLNQTGYMHNRLRMVTASF 351 Query: 361 LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDP 420 LVKDL +DWR GE YF +L D DLASNNGGWQWAASTG D+ PYFRIFNP Q ++FD Sbjct: 352 LVKDLGIDWRWGERYFAEKLNDFDLASNNGGWQWAASTGCDAQPYFRIFNPVSQSEKFDA 411 Query: 421 QGTFIRHWLPELNNVPTQYIHAPH------SWLDKNDLSLNYPLPIVDHKKACHHTLNQY 474 G FIR +LP L +P +H+P L NY P+V H +A TL +Y Sbjct: 412 DGKFIRKYLPVLAKLPKAALHSPWLASPMERAAASVALGSNYARPVVAHAEARALTLQRY 471 Query: 475 YAAKKQ 480 KK Sbjct: 472 ALVKKS 477 >gi|217965318|ref|YP_002350996.1| deoxyribodipyrimidine photolyase [Listeria monocytogenes HCC23] gi|217334588|gb|ACK40382.1| deoxyribodipyrimidine photolyase [Listeria monocytogenes HCC23] gi|307570126|emb|CAR83305.1| phr [Listeria monocytogenes L99] Length = 467 Score = 409 bits (1052), Expect = e-112, Method: Composition-based stats. Identities = 169/481 (35%), Positives = 245/481 (50%), Gaps = 27/481 (5%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 ++W R DLR+ DNKALY AC D ++ +F P Q+ + +AS+ Sbjct: 2 TSVMWFRRDLRVNDNKALYHACKEDD--LLLLFQVNPAQFIT---GSPSHQAFFASVAHF 56 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQ-RVTKLFYNRQYEINEVRRDKLLEKRL 127 ++ + + H F + IE K+++NR +RD+ + Sbjct: 57 KQEIDK-----TAHVQIMFGEPIECFQQLKDTLPSWDKVYFNRDETGYGAKRDEAAQAFF 111 Query: 128 -QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 + ++ +SF DS L + + YK++TP+ K + + + + P Sbjct: 112 DEQKIEVQSFHDSYLHSAEEVKKSPTEYYKIFTPYYKKWREEIKETPFKVTLKPENIRKE 171 Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246 + P +F + P+ GE+ A L F K + Y + RD P + TS LS Sbjct: 172 SLFPKYEEQFAEMTCDL--PILDSGERAANTRLANFIKHDIADYDKARDFPELDKTSHLS 229 Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP 306 YL G +S R W L+E K G ++ EL WR+FY + +P+ +P Sbjct: 230 RYLRTGEISIRTVWQALQE------TKATEGRATFEKELCWRDFYNMIYVSFPNQ-KNEP 282 Query: 307 FIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLL 366 IEW + +AW++G TGFP++DAAMRQL GWMHNRLRMITASFL KDLL Sbjct: 283 IQENYRFIEWENNREFFKAWQEGKTGFPLVDAAMRQLKETGWMHNRLRMITASFLTKDLL 342 Query: 367 VDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIR 426 +DWR GE+YF L+D D ASN GGWQWAASTG D+VPYFRIFNPT Q ++FDP FIR Sbjct: 343 IDWRFGEKYFQQMLIDYDPASNIGGWQWAASTGTDAVPYFRIFNPTTQSQKFDPTAKFIR 402 Query: 427 HWLPELNNVPTQYIHAPHSWLDKND------LSLNYPLPIVDHKKACHHTLNQYYAAKKQ 480 ++ EL N+P +YIH P + L +YP P++DHK+ + +Y +K+ Sbjct: 403 KYVKELANLPDKYIHQPEKMSETEQKEYGLVLGKDYPFPLIDHKERRKLAIARYEFSKEH 462 Query: 481 S 481 S Sbjct: 463 S 463 >gi|187478325|ref|YP_786349.1| deoxyribodipyrimidine photo-lyase [Bordetella avium 197N] gi|115422911|emb|CAJ49439.1| deoxyribodipyrimidine photo-lyase [Bordetella avium 197N] Length = 485 Score = 409 bits (1052), Expect = e-112, Method: Composition-based stats. Identities = 182/466 (39%), Positives = 261/466 (56%), Gaps = 6/466 (1%) Query: 10 HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69 LVWLR+DLR+ DN A + A+F A P QW+ HG +A + F +L+ + Sbjct: 14 TLVWLRSDLRLHDNP--ALAAAAAQGHTHALFFAAPGQWQSHGDAAIKIDFWRRNLVALH 71 Query: 70 KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ- 128 ++L++ G ++ ++ + L +C Q R+ + N ++ INE RRD +RLQ Sbjct: 72 QALAELGFDLSVITLQDWSEAPQALAQFCRQHRIESVHVNAEWGINERRRDGACAQRLQA 131 Query: 129 HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188 + + LLPPGS+ N Y+V+TP+ +A + L A + P + Sbjct: 132 EGIAFEVHQGGTLLPPGSVRNGKGDPYRVFTPYARACREKLRVAPPAPVRAPKAQGPAFA 191 Query: 189 TPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPY 248 ++P GE A LR F + + Y E+RD+PA+ GTS LSPY Sbjct: 192 PAEFDWPPSAEFPAQAATLWPAGETAAHERLRAFLDDGLMRYHERRDLPAVPGTSALSPY 251 Query: 249 LSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFI 308 L+ GVLSP QC + ++G W+ E++WREFY+HL+A YP++ M +P Sbjct: 252 LACGVLSPAQCLRAALRANQGEIDSGQTGPRVWITEILWREFYQHLLAAYPALSMHQPMR 311 Query: 309 PWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVD 368 P T + W AW+ G TG PI+DAA RQL GWMHNRLRMI+A FL K+LL+D Sbjct: 312 PETAYLAWRDAPQDAAAWRAGRTGIPIVDAAQRQLLATGWMHNRLRMISAMFLSKNLLID 371 Query: 369 WRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHW 428 WR+GE +FM+ L+DG+LA+NNGGWQW+ASTG D+VPYFR+FNP Q ++FDP G F+R W Sbjct: 372 WRLGEAWFMAHLIDGELAANNGGWQWSASTGADAVPYFRVFNPITQSQKFDPDGVFLRRW 431 Query: 429 LPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQY 474 LPEL N+ ++ IH P + YP IVD K + + + Sbjct: 432 LPELANLDSKSIHEPSDAQRRASA---YPKAIVDLKSSRLRAIEAF 474 >gi|294500818|ref|YP_003564518.1| FAD binding domain of DNA photolyase [Bacillus megaterium QM B1551] gi|294350755|gb|ADE71084.1| FAD binding domain of DNA photolyase [Bacillus megaterium QM B1551] Length = 475 Score = 409 bits (1052), Expect = e-112, Method: Composition-based stats. Identities = 153/482 (31%), Positives = 256/482 (53%), Gaps = 20/482 (4%) Query: 8 SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67 +VW+R D R+ DN AL+ A V+ V+I + + + + +++ +L Sbjct: 3 KTIIVWIRKDFRLVDNPALFHAAKEG--MVVPVYIHD--DYEESSMGSASKWWLHHALND 58 Query: 68 VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127 + S+ + + + D L + +++N +YE + ++RDK L+ Sbjct: 59 FKTSIKKIEGTLIVQKGNPKD----VLQKLLHETNAQDIYWNSRYEPHALKRDKELQAFF 114 Query: 128 -QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVP--AIRL 184 + ++ ++F+ +L P I YKV+T + KA ++ V + ++ + + + Sbjct: 115 SEQQINIRTFEGFLLHEPWKITKENGDPYKVFTAYYKASQKHSVSSAVKKVTSIQASSKP 174 Query: 185 TGPVTPSNIPRFFDYPF-QAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS 243 ++ S++ P+ + I + E+ A+ + + F K K+ +Y + RD PA S Sbjct: 175 VESLSVSDLDLLPSIPWDETIKSTWEATEKGAIDVFKTFLKNKLLHYEKGRDFPAEALNS 234 Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKP-KSGAFSWLNELIWREFYRHLMAFYPSVC 302 LSPYL+ G LS R ++ L+ + + + A ++ +LIWR+F L+ +P Sbjct: 235 FLSPYLATGQLSARVLYHYLRTKAEKVGSDAFEQQAEMFIRQLIWRDFAYQLLYHFPHTT 294 Query: 303 MGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLV 362 +P ++ +W + LQAWK G TG+P++DA MR+L G+MHNR+RM+ ASFLV Sbjct: 295 T-EPLNEKFKQFQWADGNEELQAWKNGKTGYPLVDAGMRELWETGFMHNRVRMVAASFLV 353 Query: 363 KDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQG 422 K LL+ W+ G +F L+D DLA+N GWQW A +G D+ PYFRIFNP Q ++FD +G Sbjct: 354 KHLLIHWKHGANWFFDTLVDADLANNTMGWQWVAGSGADAAPYFRIFNPITQSEKFDKEG 413 Query: 423 TFIRHWLPELNNVPTQYIHAPHS----WLDKNDLSLN--YPLPIVDHKKACHHTLNQYYA 476 +I+ WLPEL ++P+ YIH P L+K +++LN YP PIVDHK A L Y Sbjct: 414 EYIKKWLPELKDIPSSYIHKPWEAPADVLEKANVTLNKTYPAPIVDHKAARERALEHYQH 473 Query: 477 AK 478 K Sbjct: 474 IK 475 >gi|209809629|ref|YP_002265168.1| deoxyribodipyrimidine photo-lyase (photoreactivating enzyme) [Aliivibrio salmonicida LFI1238] gi|208011192|emb|CAQ81620.1| deoxyribodipyrimidine photo-lyase (photoreactivating enzyme) [Aliivibrio salmonicida LFI1238] Length = 479 Score = 409 bits (1051), Expect = e-112, Method: Composition-based stats. Identities = 206/480 (42%), Positives = 273/480 (56%), Gaps = 13/480 (2%) Query: 8 SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67 + VW R DLRI DN AL AA N IA+++ + QW++H S+ Q I LL+ Sbjct: 6 TTQCVWFRTDLRIADNPALSAALAN-QEPTIALYVVSEAQWKKHHKSSIQIDLIKRRLLE 64 Query: 68 VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127 ++K L + + C F ++ E L C +T LF N++YE +E+ RD + +L Sbjct: 65 LEKELQEINVPLIIVSCPWFKNTSEQLTMLCNDLNITHLFANKEYEADELARDADVRSQL 124 Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187 + ++ + G I+N + YKV+TPF+KA Q V Sbjct: 125 T-NIESHFYNAKCAVTVGKIINKTQKPYKVFTPFKKAWRAYFYQHFPTIEKVIPSVPLSE 183 Query: 188 VTPSNIPRFFDYPFQAI----DPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS 243 S + + D F + ++P+ L +R FC+EK Y +QRD PAI GTS Sbjct: 184 QQLSTLTSYLDRKFTSSMNNESKVWPVSNTAILKKMRLFCREKSQDYHDQRDYPAIDGTS 243 Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCM 303 Q+SPYL+IG LS +QC RL E + L + + WL+ELIWREFY HL+ F+PS+ Sbjct: 244 QISPYLAIGALSAKQCILRLHLEANNQLSQGQ---EIWLDELIWREFYTHLLYFFPSLSK 300 Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363 F+ + + I+WN + W G TG+PI+DAAM+QLNT GWMHNRLRMITASFLVK Sbjct: 301 NHAFLDFEKHIQWNNKQDQFEQWCNGETGYPIVDAAMKQLNTTGWMHNRLRMITASFLVK 360 Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423 DL +DWR GE+YFMS L+DGD ASNNGGWQW AS G DS PYFRIFNPT Q +RFD G Sbjct: 361 DLHIDWRWGEQYFMSTLIDGDFASNNGGWQWCASVGCDSSPYFRIFNPTTQSERFDNNGV 420 Query: 424 FIRHWLPELNNVPTQYIHAPH-SWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQSL 482 FI++WLP L + + +H P L K D NY PIVDH TL Y AK Q + Sbjct: 421 FIKYWLPNLAALLGKQLHQPSVKPLLKPD---NYVDPIVDHSVQRLKTLELYKQAKIQDV 477 >gi|254422518|ref|ZP_05036236.1| deoxyribodipyrimidine photolyase family [Synechococcus sp. PCC 7335] gi|196190007|gb|EDX84971.1| deoxyribodipyrimidine photolyase family [Synechococcus sp. PCC 7335] Length = 480 Score = 409 bits (1050), Expect = e-112, Method: Composition-based stats. Identities = 175/481 (36%), Positives = 242/481 (50%), Gaps = 22/481 (4%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 L W R DLRI DN L AA KV+ VF P I+ + ++ SL ++Q+ Sbjct: 7 LFWHRRDLRIRDNLGL-AAARKRTPKVVGVFCLDPGILNGDDIAPARVSYMIGSLAELQE 65 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130 + G + E + + +++NR E RD + L+ R Sbjct: 66 NYQSAGSELLILKGKPE----EAIPNLASALGAAAVYWNRDVEPYARERDPNVASALKDR 121 Query: 131 VICKS--FDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188 I S + D +LLPP ++ A + YKVYTPF + I+ Q + Sbjct: 122 DIESSTQYWDQLLLPPDALKTGAGEPYKVYTPFWRKWIRQEKQPPASTFAAATGLSPHEK 181 Query: 189 TPSNIPRFFDYPFQAI-------DPMFPIGEQNALHILRKFCKEKV--YYYVEQRDIPAI 239 + +N D P + + GE AL L KFC ++ Y +QRD P+I Sbjct: 182 SLANKAGNIDLPTAKALGYEWENELLLQPGEAAALAQLEKFCDDRRVIAEYDQQRDYPSI 241 Query: 240 QGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPK-SGAFSWLNELIWREFYRHLMAFY 298 GTS LS L G L R W + + + +W EL WREFY+ +M + Sbjct: 242 AGTSTLSAALKFGTLGIRTVWEAASDAYSRARSEETHRNIRTWQQELAWREFYQSVMYTF 301 Query: 299 PSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITA 358 P++ G P+ + W+ D L QAW +G TG+PI+DAAMRQLN GWMHNR RMI A Sbjct: 302 PNLAEG-PYREPLKDFPWDNDEDLFQAWCEGKTGYPIVDAAMRQLNQTGWMHNRCRMIVA 360 Query: 359 SFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRF 418 SFL KDL++DWR GE+YFM L DGDL++NNGGWQW+AS+G D P RIFNP Q K++ Sbjct: 361 SFLTKDLIIDWRWGEKYFMQHLFDGDLSANNGGWQWSASSGMDPKP-LRIFNPASQAKKY 419 Query: 419 DPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDL-SLNYPLPIVDHKKACHHTLNQYYAA 477 DP+ +IR WLPE+ ++ T + +D NDL YP +VDHK+ +Y A Sbjct: 420 DPEAEYIREWLPEIRHLDTGALV--SGKIDSNDLEGTGYPCKVVDHKEQQAIFKERYKAQ 477 Query: 478 K 478 K Sbjct: 478 K 478 >gi|323228026|gb|EGA12170.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp. enterica serovar Montevideo str. MB110209-0055] Length = 387 Score = 409 bits (1050), Expect = e-112, Method: Composition-based stats. Identities = 204/390 (52%), Positives = 273/390 (70%), Gaps = 4/390 (1%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M HLVW R DLR+ DN AL AAC ++ A+V+A++I+TP QW+ H ++ RQ+ FI A L Sbjct: 1 MPTHLVWFRRDLRLQDNLALAAACRDASARVLALYISTPAQWQAHDMAPRQAAFISAQLN 60 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 +Q +L++KGI +H+ ++F SIE + + C Q V+ LFYN QYE NE +RD +EK Sbjct: 61 ALQTALAEKGIPLLFHEVADFSASIETVKNVCRQHDVSHLFYNYQYEFNERQRDAAVEKT 120 Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 L VIC+ FDDSV+L PG+++ +MYKV+TPF+ A ++ L + +P P IR++G Sbjct: 121 LPS-VICEGFDDSVILAPGAVMTGNHEMYKVFTPFKNAWLKRLKEDIPPCVPAPKIRVSG 179 Query: 187 PVTPSNIPRFFDYPFQAIDP-MFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245 ++ P +YP QA D +FP+ E + LR+FC + Y +RD PA+ GTS+L Sbjct: 180 ALSTPLTPVSLNYPQQAFDAALFPVEENAVIAQLRQFCAQGADEYESRRDFPAVDGTSRL 239 Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305 S L+ G LSPRQC +RL E L WLNELIWREFYRHLM +YP++C + Sbjct: 240 SASLATGGLSPRQCLHRLLAEQPQALDGGPGSV--WLNELIWREFYRHLMIWYPALCKHQ 297 Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365 PFI WT+++ W ++SH QAW++G TG+PI+DAAMRQLN GWMHNRLRMITASFLVKDL Sbjct: 298 PFIRWTKRVAWQENSHDFQAWQKGETGYPIVDAAMRQLNATGWMHNRLRMITASFLVKDL 357 Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWA 395 L+DWR+GE YFMSQL+DGDLA+NNGGWQWA Sbjct: 358 LIDWRLGERYFMSQLIDGDLAANNGGWQWA 387 >gi|311748125|ref|ZP_07721910.1| deoxyribodipyrimidine photolyase [Algoriphagus sp. PR1] gi|126576610|gb|EAZ80858.1| deoxyribodipyrimidine photolyase [Algoriphagus sp. PR1] Length = 432 Score = 409 bits (1050), Expect = e-112, Method: Composition-based stats. Identities = 160/473 (33%), Positives = 236/473 (49%), Gaps = 47/473 (9%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQ-HGISARQSHFIYASL 65 + + W R DLR+ DN LY A + V+ +FI + + FI+ + Sbjct: 2 KKLSVFWFRRDLRLEDNTGLYYALQQ-ETDVLPLFIFDRTILDDLEDKTDARVSFIHDQI 60 Query: 66 LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125 +++ L +KG + E + + ++ NR YE +RD+ +EK Sbjct: 61 QNLKEELEKKGSTLLVK----YGTPEEVYQELIKKFEIQAIYTNRDYEPYAKKRDRAIEK 116 Query: 126 RLQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL 184 + + I +F D V+ PG ILN + + YKV+TPF + + + ++ +L + Sbjct: 117 LAEEKGISFLTFKDQVIFEPGEILNGSGEFYKVFTPFSRVWLSKFEETNIEALSYFHWKN 176 Query: 185 TGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244 P + + F+ P +E + YY + R+ PA GTS+ Sbjct: 177 LYQTKPEPLISLKEMGFERSSISIPS---------SNPNEEIIKYYDKTRNFPAENGTSR 227 Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304 L +L G +S RQ L +K S ++LNELIWREFY ++ + P V + Sbjct: 228 LGIHLRFGTISIRQ-----------LALKAASLNETYLNELIWREFYMMILDYNPQV-VD 275 Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364 K F P ++I W + +AW +G TG+PI+DA MR+LN G+MHNR+RMI ASFL K Sbjct: 276 KAFKPAYDQIPWRNNEEEFKAWCEGKTGYPIVDAGMRELNQTGYMHNRVRMIVASFLTKH 335 Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424 LL+DWR GE YF +LLD DLA+NNGGWQWAA TG D+ PYFR+FNP+ Q ++FD + Sbjct: 336 LLIDWRWGEAYFAKKLLDFDLAANNGGWQWAAGTGTDAQPYFRVFNPSSQTEKFDKDLKY 395 Query: 425 IRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477 I+ W+PE + YP PIVDHK A L+ Y A Sbjct: 396 IKKWIPEFG-------------------TEKYPKPIVDHKFARQRALDTYKKA 429 >gi|160897024|ref|YP_001562606.1| deoxyribodipyrimidine photo-lyase [Delftia acidovorans SPH-1] gi|160362608|gb|ABX34221.1| Deoxyribodipyrimidine photo-lyase [Delftia acidovorans SPH-1] Length = 493 Score = 408 bits (1049), Expect = e-112, Method: Composition-based stats. Identities = 181/494 (36%), Positives = 246/494 (49%), Gaps = 26/494 (5%) Query: 8 SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67 V LVWLR DLR+ D+ ALY A +V VFI + + R+ FI SL Sbjct: 6 PVGLVWLRRDLRLADHAALYHALRQC-RQVHCVFIFDDDILAPLPCADRRVEFICQSLSG 64 Query: 68 VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127 + +L Q E + Q +F N E + + RD + + L Sbjct: 65 LDDALRQASGRADTGLIVRRGQPAEQIPDLARQLGAQAVFCNWDDEPDALARDTRVRQAL 124 Query: 128 Q-HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVP------ 180 V SF D ++ +L A + V+TP++ A ++ + L + P Sbjct: 125 AAEGVALHSFKDHMVFARDEVLTQAGAPFSVFTPYKNAWLRQITPFFLSAYPSERDLPER 184 Query: 181 -AIRLTGPVTPSNIPRFFDYPFQA---IDPMFPIGEQNALHILRKFCKEKVYYYVEQRDI 236 A R G P +P D F+A P G A +L F ++ Y + RD Sbjct: 185 LAPRPEGERRP--VPTAADLGFEAGTLDGLRLPTGCAGAEELLADFLP-RLPRYKQARDF 241 Query: 237 PAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMA 296 PA++G S LS +L G +S R+ RL E GA +WL+ELIWR+FY ++A Sbjct: 242 PAVKGPSYLSVHLRFGTVSIRRLA-RLAWEQTQSQPHDAEGAATWLSELIWRDFYFQILA 300 Query: 297 FYPSVCMGKPFIPWTEKIEWNKDSH---LLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRL 353 +P V + F P + I W+ L AW +G TG+P++DAAMRQLNT G+MHNRL Sbjct: 301 HHPHV-VHASFKPAYDAIVWDTGPEADALYAAWCEGRTGYPLVDAAMRQLNTTGYMHNRL 359 Query: 354 RMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTI 413 RM+ ASFLVKDL +DWR GE +F QL D DLA+NNGGWQWAASTG D+ P+FRIFNP Sbjct: 360 RMVAASFLVKDLGIDWRRGEAWFARQLNDFDLAANNGGWQWAASTGCDAQPWFRIFNPVT 419 Query: 414 QGKRFDPQGTFIRHWLPELNNVPTQYIHAPHS------WLDKNDLSLNYPLPIVDHKKAC 467 Q ++FD FI ++PEL +P HAP L +YP P+VDH A Sbjct: 420 QSQKFDADARFIERYVPELARLPAALRHAPWQARPLELAEAGVVLGTDYPHPVVDHAAAR 479 Query: 468 HHTLNQYYAAKKQS 481 TL +Y K+ S Sbjct: 480 ERTLARYGVVKQAS 493 >gi|315281208|ref|ZP_07869885.1| deoxyribodipyrimidine photo-lyase [Listeria marthii FSL S4-120] gi|313615150|gb|EFR88618.1| deoxyribodipyrimidine photo-lyase [Listeria marthii FSL S4-120] Length = 467 Score = 408 bits (1049), Expect = e-112, Method: Composition-based stats. Identities = 173/480 (36%), Positives = 244/480 (50%), Gaps = 27/480 (5%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 ++W R DLR++DNKALY A D +I +F P Q+ + +AS+ Sbjct: 2 TSVMWFRRDLRVSDNKALYHASKEDD--LILLFQVNPAQFIT---GSPSHQAFFASVAHF 56 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQ-RVTKLFYNRQYEINEVRRDKLLEKRL 127 Q+ L++ F D +E L K+F+NR RD ++ Sbjct: 57 QQELAK-----TARLQIMFGDPMECLQQLKEAVPTWNKVFFNRDETGYGASRDAAAQQFF 111 Query: 128 QHR-VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 R + +F DS L + + YK++TP+ K + + + L+ P Sbjct: 112 DERQIEVHAFHDSYLHSAEEVKKSPTEYYKIFTPYYKKWREEMKEMPLKVTLKPENIRKE 171 Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246 + P +F + P+ GEQ A L F KE + Y + RD P + TS LS Sbjct: 172 SLFPKYEEQFAEIVHDL--PVSDAGEQAANARLASFIKEDLTDYDKARDFPELDKTSHLS 229 Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP 306 YL G +S R W L++ + G ++ EL WR+FY + +P +P Sbjct: 230 RYLRTGEISIRTIWQALQQ------TEATEGRATFEKELCWRDFYNMIYVSFPDQ-KNEP 282 Query: 307 FIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLL 366 IEW + W++G TGFP++DAAMRQL GWMHNRLRMITASFL KDLL Sbjct: 283 IQENYRYIEWENSRAFFKCWQEGQTGFPLVDAAMRQLKETGWMHNRLRMITASFLTKDLL 342 Query: 367 VDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIR 426 +DWR GE+YF L+D D ASN GGWQWAASTG D+VPYFRIFNPT Q ++FDP G FIR Sbjct: 343 IDWRFGEKYFQQMLIDYDPASNIGGWQWAASTGTDAVPYFRIFNPTTQSEKFDPAGKFIR 402 Query: 427 HWLPELNNVPTQYIHAPHSWLDKND------LSLNYPLPIVDHKKACHHTLNQYYAAKKQ 480 ++ EL ++P ++IH P +K + +YPLPIVDHK+ + +Y +K+ Sbjct: 403 KYVKELAHIPDKFIHQPEKMSEKEQNEYGLLVGKDYPLPIVDHKERRKLAIARYEFSKEH 462 >gi|189209473|ref|XP_001941069.1| deoxyribodipyrimidine photo-lyase [Pyrenophora tritici-repentis Pt-1C-BFP] gi|187977162|gb|EDU43788.1| deoxyribodipyrimidine photo-lyase [Pyrenophora tritici-repentis Pt-1C-BFP] Length = 632 Score = 408 bits (1049), Expect = e-111, Method: Composition-based stats. Identities = 171/488 (35%), Positives = 258/488 (52%), Gaps = 22/488 (4%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAK---VIAVFIATPEQWRQHGISARQSHFIYASLLQ 67 + W + DLRI DN L A + + VI V++ +P+ W H +S + F S+ Sbjct: 138 VHWFKRDLRIRDNTGLSKAAELAKERGIGVIGVWLMSPQDWEAHIVSPPKCDFELRSVEL 197 Query: 68 VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD-KLLEKR 126 ++K L + I + + L + V +F N +YE +E+RR+ +L+ Sbjct: 198 LKKELEELDIPLYIETIPERRNVTKRLVELAQEWNVKNVFCNLEYEPDELRREERLVRMM 257 Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 L+ + + D ++PPGS+ + A + Y VY+P+ +A I +L + P Sbjct: 258 LEKGIGFDPYHDDCVVPPGSLKSGAGKQYAVYSPWCRAWIAHLHSHPDLLIERPMPGQNP 317 Query: 187 PVTPSNIPRFFD--------------YPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVE 232 + + FD + ++P GE A+ L +F EK+ Y + Sbjct: 318 ANFRNKFSKLFDASVPSIPESKSLTPEEKERFSRLWPAGEAAAIDRLERFLVEKIVKYKD 377 Query: 233 QRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKE-EFVDLLIKPKSGAFSWLNELIWREFY 291 R+ PA+ T ++S + + G L+ R ++ L K G +W+ E+ WR+FY Sbjct: 378 TRNFPALNSTGRVSVHHAAGTLAARTSIRMARDINSAQKLDGGKDGVKTWIGEVAWRDFY 437 Query: 292 RHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHN 351 RH++ +P VCM KPF I+W ++ AW +G TG+PI+DAAMR LN G+MHN Sbjct: 438 RHVLVHWPYVCMNKPFKYEYTNIDWEYNTAHFTAWTRGQTGYPIVDAAMRCLNHTGYMHN 497 Query: 352 RLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNP 411 RLRMITASFL K LL+DWR+GE+YF+S L+DGD ASNNGGW ++ASTG D PYFRIFNP Sbjct: 498 RLRMITASFLAKHLLLDWRLGEQYFLSHLIDGDFASNNGGWGFSASTGVDPQPYFRIFNP 557 Query: 412 TIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKN---DLSLNYPLPIVDHKKACH 468 IQ ++FD G FIR W+ EL +V + +H P+ + + YP PIV+H A Sbjct: 558 WIQSEKFDADGEFIRTWVEELKDVQGKDVHNPYKAGGRAMETARRMGYPEPIVEHTVARA 617 Query: 469 HTLNQYYA 476 L +Y Sbjct: 618 RCLKRYKE 625 >gi|307151428|ref|YP_003886812.1| deoxyribodipyrimidine photo-lyase [Cyanothece sp. PCC 7822] gi|306981656|gb|ADN13537.1| Deoxyribodipyrimidine photo-lyase [Cyanothece sp. PCC 7822] Length = 476 Score = 408 bits (1049), Expect = e-111, Method: Composition-based stats. Identities = 164/477 (34%), Positives = 242/477 (50%), Gaps = 17/477 (3%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 L W R DLRI+DN L AA S K++ +F P + ++ + ++ L ++Q+ Sbjct: 6 LFWHRRDLRISDNIGLSAARQKS-PKIVGIFCLDPNILNKDDVAPARVTYLIGCLQELQQ 64 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130 Q G + + + + + +F+N E RD+ + LQ + Sbjct: 65 QYQQAGSQLLILRGEPS----QAIPRLAATLKASAVFWNLDVEPYAKNRDEQVINVLQEK 120 Query: 131 VICKS-FDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLP------VPAIR 183 I + F D +L PG ++ + YKV+TPF + + Q+ L+ L + Sbjct: 121 GIARENFWDQLLHAPGQLVTQSKDYYKVFTPFWRNWSKLKKQSPLQKLEGLKGLTEEELT 180 Query: 184 LTGPVTPSNIPRFFDYPFQAIDPMF-PIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGT 242 LT ++P + +P+ GE A L +FC + Y EQR+ PA+ GT Sbjct: 181 LTINAGVIDLPTAKKLGYAWENPLLLDPGETAAKKRLEEFCSSAINEYQEQRNFPAVDGT 240 Query: 243 SQLSPYLSIGVLSPRQCWNRLKEEFVDLLI-KPKSGAFSWLNELIWREFYRHLMAFYPSV 301 S+LS L G + R W E + + + + +W EL WREFY+H M F+P + Sbjct: 241 SRLSAALKFGAIGIRTVWKATLEVYENSRSDEARKSIETWQQELAWREFYQHCMYFFPEL 300 Query: 302 CMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFL 361 G + W + QAW +G TG+PI+DAAMRQLN WMHNR RMI ASFL Sbjct: 301 AEG-SYRKDFRSFPWQNNEDYFQAWCEGKTGYPIVDAAMRQLNETAWMHNRCRMIVASFL 359 Query: 362 VKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQ 421 KDL+++W+ GE+YFM +L DGDL++NNGGWQW+AS+G D P RIFNP Q ++FDP+ Sbjct: 360 TKDLIINWQWGEKYFMQKLYDGDLSANNGGWQWSASSGMDPKP-LRIFNPASQAQKFDPE 418 Query: 422 GTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478 G +IR WLPEL +V T+++ YP PIVDHKK + + Sbjct: 419 GEYIRQWLPELRSVDTEFL-ISGKIPSLERYQCGYPEPIVDHKKRQAEFKLLFQEVR 474 >gi|254292413|ref|YP_003058436.1| deoxyribodipyrimidine photo-lyase [Hirschia baltica ATCC 49814] gi|254040944|gb|ACT57739.1| Deoxyribodipyrimidine photo-lyase [Hirschia baltica ATCC 49814] Length = 475 Score = 408 bits (1049), Expect = e-111, Method: Composition-based stats. Identities = 156/485 (32%), Positives = 247/485 (50%), Gaps = 28/485 (5%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 ++L W R DLR++DN AL +A ++ A IA+FI E Q + + +++ SL+++ Sbjct: 1 MNLCWFRQDLRLSDNPALRSALSDNSA--IALFILE-ETDTQRPMGSACKAWLHESLIRL 57 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128 Q L G+ + D + ++ +++NR+Y+ +V D+ L + L+ Sbjct: 58 QSDLEAIGVPLVLRRGDARD----IIPKLTSDLKIDNVYWNRRYDPKDVAIDRALMEHLK 113 Query: 129 HRVI-CKSFDDSVLLPPGSILN-HALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 + +SF +VL P I + A YKV++PF KA ++ V A ++P I+ Sbjct: 114 EEGVNVESFKANVLFEPWEIKSAGAGTPYKVFSPFWKAALKEGVPAQSLAVPT-KIQSKP 172 Query: 187 PVTPSNIPRFFDYPFQAIDPMFP--------IGEQNALHILRKFCKEKVYYYVEQRDIPA 238 + D+ P + GE A ++F + + Y + RD+P+ Sbjct: 173 QLDQLPFDNLEDWDLMPASPNWTNGFWDVWVPGEAGAFERFKEFLEINLKGYSQNRDVPS 232 Query: 239 IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFY 298 TS LSP+L G +SP Q W+ + + K + +L E+ WREF ++ FY Sbjct: 233 KNHTSCLSPHLRFGEISPLQIWHGVHAHSGGEVDKD---GYKFLAEVGWREFSHSIL-FY 288 Query: 299 PSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITA 358 + + W +D + L AW+ G TG+P++DA MR+L G++HNR+RM+ A Sbjct: 289 ADNLSQTNWKSDFDGFAWVQDENGLTAWQSGQTGYPLVDAGMRELWQTGYIHNRVRMVVA 348 Query: 359 SFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRF 418 SFL+K L +DWR GE +F L+D A+N WQW A +G D+ P+FRIFNP +Q ++F Sbjct: 349 SFLIKHLRIDWREGEAWFWDTLVDACPANNPASWQWVAGSGADASPFFRIFNPIMQSEKF 408 Query: 419 DPQGTFIRHWLPELNNVPTQYIHAPHSWLD------KNDLSLNYPLPIVDHKKACHHTLN 472 DP+G++IR W+PEL N+ + IH P L NYP PIVDHK A L Sbjct: 409 DPKGSYIRKWVPELANLDNKSIHTPWEAPKLVLQEVGVRLGENYPKPIVDHKTARDKALA 468 Query: 473 QYYAA 477 Y Sbjct: 469 AYKDM 473 >gi|307945306|ref|ZP_07660642.1| cryptochrome-2 [Roseibium sp. TrichSKD4] gi|307771179|gb|EFO30404.1| cryptochrome-2 [Roseibium sp. TrichSKD4] Length = 486 Score = 408 bits (1048), Expect = e-111, Method: Composition-based stats. Identities = 164/494 (33%), Positives = 251/494 (50%), Gaps = 26/494 (5%) Query: 1 MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPE--QWRQHGISARQS 58 M A +VW R DLR+ DN ALY A VI VFI I A Sbjct: 1 MSNRVAFMTSIVWFRQDLRVADNAALYHAAQEG--PVIPVFIWDDAAPLTNSQAIGAAGK 58 Query: 59 HFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVR 118 +++ SL +++ L +V + D L L+ + + +NR Y+ + Sbjct: 59 WWLHHSLTALREQLGDL-VVLR-------GDPATVLQELALETKAEAVRWNRAYDEYGIE 110 Query: 119 RDKLLEKRLQH-RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSL 177 RDK ++ L+ ++ KSF +VL P I + YKVY+ + +A+ V A L Sbjct: 111 RDKKIKTELRESGLMVKSFKGNVLHEPWDIKTGSGSSYKVYSHYWRAVKARGVAAPLPVP 170 Query: 178 PVPAIRL----TGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQ 233 + + G +PR ++ + + ++ GEQ A L F + + Y E Sbjct: 171 DKIELAVGWVSLGIEALDLLPRDPNW-AEGWENVWTPGEQGARERLCVFLDQGLNGYGEL 229 Query: 234 RDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRH 293 R+ P + S+LSP+L G +SP Q W + D+ + + A +L+E++WREF H Sbjct: 230 RNRPDLPNVSRLSPHLRFGEISPTQIW-ATTQMHADVHPEHATDADKFLSEIVWREFSYH 288 Query: 294 LMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRL 353 L+ +P + K + + W +++ L+AW++G TG+PI+DA MR+L G+MHNR+ Sbjct: 289 LLFHFPDLPE-KNWKVGFDAYPWRENAEDLRAWQRGQTGYPIVDAGMRELWQTGYMHNRV 347 Query: 354 RMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTI 413 RMI ASFLVK L + W+ GE +F LLD D+A+N+ WQW + TG D+ PYFRIFNP Sbjct: 348 RMIVASFLVKHLRISWQHGENWFRDTLLDADVANNSASWQWVSGTGADAAPYFRIFNPYT 407 Query: 414 QGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSW------LDKNDLSLNYPLPIVDHKKAC 467 Q ++FDP G +IR W+PEL ++ + AP L YPLP+VDH+ A Sbjct: 408 QAQKFDPDGAYIRKWVPELKDLRAPQLFAPQDASPMDLRAAGVRLGETYPLPMVDHQTAR 467 Query: 468 HHTLNQYYAAKKQS 481 L+ Y A K ++ Sbjct: 468 KKALDGYEAVKAEN 481 >gi|217976568|ref|YP_002360715.1| Deoxyribodipyrimidine photo-lyase [Methylocella silvestris BL2] gi|217501944|gb|ACK49353.1| Deoxyribodipyrimidine photo-lyase [Methylocella silvestris BL2] Length = 486 Score = 407 bits (1047), Expect = e-111, Method: Composition-based stats. Identities = 151/495 (30%), Positives = 242/495 (48%), Gaps = 27/495 (5%) Query: 1 MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHF 60 M A + +VW R+DLR+ DN+AL AA ++ ++ V+I + + Sbjct: 1 MAAPKTQNTAIVWFRDDLRLADNEALAAAL-STGGPLLCVYILEDGTAGFRPLGGAARWW 59 Query: 61 IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120 ++ SL + + ++ KG ++ L + + + R+Y E+ D Sbjct: 60 LHHSLQALGQDIAAKGGRLDL----FCGEARRILPALAEAAGARIICWTRRYGGPEMAVD 115 Query: 121 KLLEKRLQ-HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKA---------LIQNLV 170 L+ + + V KSF+ +L P I + VYTP+ +A + Sbjct: 116 AALKAQFKTSGVEAKSFNGHLLHEPWDITRGDGHGFAVYTPYWRAASAAAQVGEPLPAPD 175 Query: 171 QADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYY 230 + +P A+R T + +P D+ + + GE A L+ F + ++ Y Sbjct: 176 RLPAAPIPRGALRTTSIEALALLPEKPDW-AGGLRAAWRPGENGAQERLKAFLEGEIASY 234 Query: 231 VEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREF 290 +R+ P+ S+LSP+L G + PRQ + ++ + + + G +L EL WREF Sbjct: 235 SLERNRPSADAVSRLSPHLRFGEIGPRQIFAAVRTAWDNA---AQKGGVKFLAELGWREF 291 Query: 291 YRHLMAFYPSVCMGKPFIPWTEKIEWNK-DSHLLQAWKQGYTGFPIIDAAMRQLNTIGWM 349 HL ++P +K+ W + L AW++G TG+P+IDA MR+L G+M Sbjct: 292 NYHLSFYHPDAARQN-IQRRFDKMPWREPAPRELSAWQRGETGYPLIDAGMRELWATGYM 350 Query: 350 HNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIF 409 HNR+RM+ ASFL+K LL+DWRIGE +F L D D A+N WQW A +G D+ PYFRIF Sbjct: 351 HNRVRMVVASFLIKHLLIDWRIGENWFWDTLCDADPANNPMNWQWVAGSGADAAPYFRIF 410 Query: 410 NPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDK------NDLSLNYPLPIVDH 463 NP +QG++FD G ++R W+PEL +P ++IH P + +L NYP PIVD Sbjct: 411 NPVLQGEKFDAAGDYVRRWIPELAKLPNKWIHKPFAAPPALLRGAGVELGKNYPRPIVDL 470 Query: 464 KKACHHTLNQYYAAK 478 + L + K Sbjct: 471 AEGRARALAAFEKVK 485 >gi|226941562|ref|YP_002796636.1| PhrB [Laribacter hongkongensis HLHK9] gi|226716489|gb|ACO75627.1| PhrB [Laribacter hongkongensis HLHK9] Length = 469 Score = 407 bits (1047), Expect = e-111, Method: Composition-based stats. Identities = 175/473 (36%), Positives = 243/473 (51%), Gaps = 21/473 (4%) Query: 10 HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69 L WLR DLR+ D+ AL +A S +V+ VF+ S R+ FI+ SL ++Q Sbjct: 6 SLCWLRRDLRLDDHAALSSALQQS-REVVCVFVFDRAILDSLPASDRRVDFIHRSLCELQ 64 Query: 70 KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH 129 L Q G + + E L + + +F + E V RD + +L+ Sbjct: 65 ARLQQHGSTLVCR----YGWADEALPALAAELGAQVVFAAQDDEPASVTRDARVAGQLEQ 120 Query: 130 RV-ICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPV-PAIRLTGP 187 I D L +L + V+TP+ +A + L AD+ PV P + P Sbjct: 121 AGCILHLVKDHTLRARDELLTRTGTPFTVFTPYARAWLARLAPADMAEWPVAPYLDRLCP 180 Query: 188 VTPSNIPRFFDYPFQAIDPM---FPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244 + +P F + G A L +F ++ Y E+RD PA+ TS+ Sbjct: 181 LPAQPLPSLASMGFTDTGLAALGWQAGSTGAQAALAQFLP-RLPLYHEERDFPALDATSR 239 Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304 LSP+L G LS RQ + GA +WLNEL+WR+FY ++ P + G Sbjct: 240 LSPHLRFGTLSVRQLVRLATDA-------GHEGAQAWLNELVWRDFYHQVLWHRPQLAQG 292 Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364 F P ++++W ++ AW +G TG+P++DAAMRQL GWMHNRLRMI ASFL KD Sbjct: 293 HAFKPVYDQLDWPGEADHFAAWTEGRTGYPLVDAAMRQLRQTGWMHNRLRMICASFLAKD 352 Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424 LL+DWR+GE +F LLD D A+NNGGWQWAASTG D+ PYFRIFNP Q ++FDP G F Sbjct: 353 LLLDWRLGEAWFAECLLDFDFAANNGGWQWAASTGCDAQPYFRIFNPVSQSRKFDPDGHF 412 Query: 425 IRHWLPELNNVPTQYIHAPH---SWLDKNDLSLNYPLPIVDHKKACHHTLNQY 474 IRH++PEL + + IHAP +YPLP+VDH + L Y Sbjct: 413 IRHFVPELARLDAEAIHAPWLARRLPPGFSPGHDYPLPLVDHARQRERALALY 465 >gi|29467479|dbj|BAC67178.1| cryptochrome 2 [Armoracia rusticana] Length = 617 Score = 407 bits (1047), Expect = e-111, Method: Composition-based stats. Identities = 141/500 (28%), Positives = 229/500 (45%), Gaps = 29/500 (5%) Query: 7 MSVH---LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYA 63 M+ + +VW R DLRI DN AL AA H V VFI PE+ Q ++ Sbjct: 1 MTTNKKTIVWFRRDLRIEDNPALAAAAH--QGSVFPVFIWCPEEEGQFYPGRASRWWMKQ 58 Query: 64 SLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLL 123 SL + +SL G + N ++ + TK+ +N Y+ + RD + Sbjct: 59 SLAHLSQSLKALGSELTLIKTHN---TVSAILDCIRVTGATKVVFNHLYDPVSLVRDHTV 115 Query: 124 EKRLQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAI 182 +++L I +SF+ +L P I + + ++ + K + +++ + P I Sbjct: 116 KEKLVELGISVQSFNGDLLYEPWEIYCEKGKPFTSFSSYWKKCLDMSIESVMLPPPWRLI 175 Query: 183 RLTGPVTPSNIPRFFDYPFQA---------IDPMFPIGEQNALHILRKFCKEKVYYYVEQ 233 +T V + + + + G NA IL +F +++ YY + Sbjct: 176 PITAAVEAVWACSIEELGLENDAEKPSNALLTRAWSPGWSNADKILNEFIDKQLIYYAKN 235 Query: 234 RDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEF----VDLLIKPKSGAFSWLNELIWRE 289 + TS LSPYL G +S R+ + + + D + + +L + RE Sbjct: 236 SNKVVGNATSLLSPYLHYGEISVRRVFQCARMKQIIWARDKNSEGEESTDLFLKGIGLRE 295 Query: 290 FYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWM 349 + R++ +P + + W+ D +AW+QG TG+P++DA MR+L GWM Sbjct: 296 YSRYICFNFP-FTHEQSLLSHLRFFPWDADVDKFKAWRQGRTGYPLVDAGMRELWATGWM 354 Query: 350 HNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIF 409 HNR+R+I +SF VK LL+ W+ G +YF LLD DL + GWQ+ + + D R+ Sbjct: 355 HNRIRVIVSSFAVKFLLLPWKWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELDRLD 414 Query: 410 NPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSW------LDKNDLSLNYPLPIVDH 463 NP IQG +FDP+G +IR WLPEL +PT++IH P +L NY PIVD Sbjct: 415 NPAIQGAKFDPEGEYIRQWLPELARLPTEWIHHPWDAPLTVLKASGVELGTNYVKPIVDI 474 Query: 464 KKACHHTLNQYYAAKKQSLL 483 A ++ ++ Sbjct: 475 DTARELLTKAISRTREAQIM 494 >gi|171060633|ref|YP_001792982.1| deoxyribodipyrimidine photo-lyase [Leptothrix cholodnii SP-6] gi|170778078|gb|ACB36217.1| Deoxyribodipyrimidine photo-lyase [Leptothrix cholodnii SP-6] Length = 511 Score = 407 bits (1046), Expect = e-111, Method: Composition-based stats. Identities = 182/494 (36%), Positives = 245/494 (49%), Gaps = 27/494 (5%) Query: 4 TTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYA 63 T + LVWLR DLR+ D+ AL+ A ++ KV FI + R+ FI+ Sbjct: 27 DTPVDAALVWLRRDLRLDDHAALHHALRSAK-KVWCAFIFDTTILDALPRADRRVEFIHH 85 Query: 64 SLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLL 123 ++++ L G D ++ + + V + NR YE V RD + Sbjct: 86 GIVELDGLLRAHGSGLIVRHG----DPLQEIPAIAGALGVQAVHINRDYEPAAVARDAQV 141 Query: 124 EKRLQHRVIC-KSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVP-- 180 L H I S D V+ IL A + V+TP++ A ++ L LR+ PV Sbjct: 142 RGALAHAGIALHSHKDQVIFETDEILTMAGSPFSVFTPYKNAWLKKLDGYYLRAYPVQRH 201 Query: 181 --AIRLTGPVTPSNIPRFFDYPFQAID--PMFPIGEQNALHILRKFCKEKVYYYVEQRDI 236 A+ +P D F D G +L F E++ Y + RD Sbjct: 202 IGALAPVPAALDRGVPTLNDLDFLPTDMAARLHPGASGGATLLLDFL-ERIDRYADTRDF 260 Query: 237 PAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMA 296 PAI+G S LS +L G +S RQ E V GA WL+ELIWR+FY ++ Sbjct: 261 PAIKGPSYLSVHLRFGTVSIRQLARLAHERMV----GGSRGAEVWLSELIWRDFYHQILH 316 Query: 297 FYPSVCMGKPFIPWTEKIEWNK---DSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRL 353 +P V + P E + W L AW +G TG+PIIDAAM QLN G+MHNRL Sbjct: 317 HHPRVVTH-CYKPEYEALRWEHGKHAEQLFAAWCEGRTGYPIIDAAMLQLNRTGYMHNRL 375 Query: 354 RMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTI 413 RM+ ASFL KDL +DWR GE YF QL D DLA+NNGGWQWAASTG D+ PYFRIFNP Sbjct: 376 RMVVASFLTKDLGIDWRRGEAYFALQLNDYDLAANNGGWQWAASTGCDAQPYFRIFNPIS 435 Query: 414 QGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSW------LDKNDLSLNYPLPIVDHKKAC 467 Q RFD +G FIR +LP+L ++ IHAP L +YP+P+V+H +A Sbjct: 436 QSLRFDAEGRFIRRYLPQLADLSRAAIHAPWQAKPLELQAAGVKLGRDYPMPVVEHAEAR 495 Query: 468 HHTLNQYYAAKKQS 481 TL ++ A K + Sbjct: 496 ELTLARFAAVKGAA 509 >gi|186682403|ref|YP_001865599.1| DNA photolyase, FAD-binding [Nostoc punctiforme PCC 73102] gi|186464855|gb|ACC80656.1| DNA photolyase, FAD-binding [Nostoc punctiforme PCC 73102] Length = 481 Score = 407 bits (1046), Expect = e-111, Method: Composition-based stats. Identities = 166/481 (34%), Positives = 236/481 (49%), Gaps = 18/481 (3%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 L W R DLRI+DN L AA S KV+ VF P + ++ + ++ L ++Q+ Sbjct: 6 LFWHRRDLRISDNTGLAAAKRRS-PKVVGVFCLDPHILERDDVAPVRVTYMIGCLQKLQE 64 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130 +Q G D ++ + + +F+N E RD+ + L+ + Sbjct: 65 RYAQVGSQLLILHA----DPVQAIPALAEAINAKAVFWNWDVEPYSQERDRTIINALKEK 120 Query: 131 VI--CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPV------PAI 182 I D +L P I Y VYTPF K I + +L Sbjct: 121 GIEFLNQNWDQILNSPDEIRTGGNSPYTVYTPFWKNWITKPKANPVETLQNVEGLTEAEQ 180 Query: 183 RLTGPVTPSNIPRFFDYPFQAIDPMF-PIGEQNALHILRKFCKEKVYYYVEQRDIPAIQG 241 + +P D F + + GE A L +F + + Y EQR+ PA+ G Sbjct: 181 EIAKLSGSLTLPSAKDLGFIWDEQLIISPGEAAAQERLEEFTNKAITEYQEQRNFPAVDG 240 Query: 242 TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKS-GAFSWLNELIWREFYRHLMAFYPS 300 TSQLS L GV+ R W E + + + +W EL WREFY+H M +P Sbjct: 241 TSQLSAALKFGVIGIRTVWQATIEALENSRSEETAVNIRTWQQELAWREFYQHAMYNFPE 300 Query: 301 VCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASF 360 + G F + W + QAW +G TG+PI+DAAMRQ+N GWMHNR RMI ASF Sbjct: 301 LADG-AFRDTFKNFPWETNEEHFQAWCEGRTGYPIVDAAMRQMNESGWMHNRCRMIVASF 359 Query: 361 LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDP 420 L KDLL++ ++GE+YFM L+DGDL++NNGGWQW+AS+G D P RIFNP Q ++FDP Sbjct: 360 LTKDLLINPQLGEKYFMKHLIDGDLSANNGGWQWSASSGMDPKPV-RIFNPASQTQKFDP 418 Query: 421 QGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQ 480 +G +IR W+ EL +V T+Y+ ++ YP PIVDHK + +Y K Sbjct: 419 EGEYIRQWVSELRSVDTEYLVT-GKIPPLERHAVGYPDPIVDHKIQQNQFKLRYQQQKNT 477 Query: 481 S 481 S Sbjct: 478 S 478 >gi|300765347|ref|ZP_07075330.1| deoxyribodipyrimidine photolyase [Listeria monocytogenes FSL N1-017] gi|300513908|gb|EFK40972.1| deoxyribodipyrimidine photolyase [Listeria monocytogenes FSL N1-017] Length = 467 Score = 407 bits (1046), Expect = e-111, Method: Composition-based stats. Identities = 169/481 (35%), Positives = 244/481 (50%), Gaps = 27/481 (5%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 ++W R DLR+ DNKALY AC D ++ +F P Q+ + +AS+ Sbjct: 2 TSVMWFRRDLRVNDNKALYHACKEDD--LLLLFQVNPAQFIT---GSPSHQGFFASVAHF 56 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQ-RVTKLFYNRQYEINEVRRDKLLEKRL 127 ++ + + H F + IE K+++NR +RD+ + Sbjct: 57 KQEIDK-----TAHLQIMFGEPIECFQQLKDSLPSWDKVYFNRDETGYGAKRDEAAQAFF 111 Query: 128 -QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 + ++ ++F DS L + + YK++TP+ K + + + + Sbjct: 112 DEQKIEVQAFHDSYLHSAEEVKKSPTEYYKIFTPYYKKWREEIKETPFKVTLKHENIRKE 171 Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246 + +F + P+ IGE+ A L F K V Y + RD P + TS LS Sbjct: 172 SLFLKYEEQFAEMTSDL--PILDIGERAANTRLANFIKHDVADYDKARDFPELDKTSHLS 229 Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP 306 YL G +S R W L+E + G ++ EL WR+FY + +P+ +P Sbjct: 230 RYLRTGEISIRTIWQTLQE------TEATEGRATFEKELCWRDFYNMIYVSFPNQ-KNEP 282 Query: 307 FIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLL 366 IEW + +AW++G TGFP++DAAMRQL GWMHNRLRMITASFL KDLL Sbjct: 283 IQENYRFIEWENNREYFKAWQEGKTGFPLVDAAMRQLKETGWMHNRLRMITASFLTKDLL 342 Query: 367 VDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIR 426 +DWR GE+YF L+D D ASN GGWQWAASTG D+VPYFRIFNPT Q ++FD G FIR Sbjct: 343 IDWRFGEKYFQQMLIDYDPASNIGGWQWAASTGTDAVPYFRIFNPTTQSQKFDSTGKFIR 402 Query: 427 HWLPELNNVPTQYIHAPHSWLDKND------LSLNYPLPIVDHKKACHHTLNQYYAAKKQ 480 ++ EL N+P +YIH P + L +YP PIVDHK+ + +Y +K+ Sbjct: 403 KYVKELANLPDKYIHQPEKMSETEQKEHGLLLGKDYPFPIVDHKERRKLAIARYEFSKEH 462 Query: 481 S 481 S Sbjct: 463 S 463 >gi|46906833|ref|YP_013222.1| deoxyribodipyrimidine photolyase [Listeria monocytogenes serotype 4b str. F2365] gi|46880099|gb|AAT03399.1| deoxyribodipyrimidine photolyase [Listeria monocytogenes serotype 4b str. F2365] Length = 467 Score = 407 bits (1046), Expect = e-111, Method: Composition-based stats. Identities = 169/481 (35%), Positives = 245/481 (50%), Gaps = 27/481 (5%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 ++W R DLR+ DNKALY AC +D ++ +F P Q+ + +AS+ Sbjct: 2 TSVMWFRRDLRVNDNKALYHACKEND--LLLLFQVNPAQFIT---GSPSHQAFFASVAHF 56 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQ-RVTKLFYNRQYEINEVRRDKLLEKRL 127 ++ + + H F + IE K+++NR +RD+ + Sbjct: 57 KQEIDK-----TAHLQIMFGEPIECFQQLKDSLPSWDKVYFNRDETGYGAKRDEAAQAFF 111 Query: 128 -QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 + ++ ++F DS L + + YK++TP+ K + + + + Sbjct: 112 DEQKIEVQAFHDSYLHSAEEVKKSPTEYYKIFTPYYKKWREEIKETPFKVTLKHENIRKE 171 Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246 + +F + P+ IGE+ A L F K V Y + RD P + TS LS Sbjct: 172 SLFLKYEEQFAEMTSDL--PILDIGERAANTRLANFIKHDVADYDKARDFPELDKTSHLS 229 Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP 306 YL G +S R W L+E + G ++ EL WR+FY + +P+ +P Sbjct: 230 RYLRTGEISIRTIWQSLQE------TEATEGRATFEKELCWRDFYNMIYVSFPNQ-KNEP 282 Query: 307 FIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLL 366 IEW + +AW++G TGFP++DAAMRQL GWMHNRLRMITASFL KDLL Sbjct: 283 IQENYRFIEWENNREYFKAWQEGKTGFPLVDAAMRQLKETGWMHNRLRMITASFLTKDLL 342 Query: 367 VDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIR 426 +DWR GE+YF L+D D ASN GGWQWAASTG D+VPYFRIFNPT Q ++FD G FIR Sbjct: 343 IDWRFGEKYFQQMLIDYDPASNIGGWQWAASTGTDAVPYFRIFNPTTQSQKFDSTGKFIR 402 Query: 427 HWLPELNNVPTQYIHAPHSWLDKND------LSLNYPLPIVDHKKACHHTLNQYYAAKKQ 480 ++ EL N+P +YIH P + L +YP PIVDHK+ + +Y +K+ Sbjct: 403 KYVKELANLPDKYIHQPEKMSETEQKEHGLLLGKDYPFPIVDHKERRKLAIARYEFSKEH 462 Query: 481 S 481 S Sbjct: 463 S 463 >gi|254828345|ref|ZP_05233032.1| deoxyribodipyrimidine photolyase [Listeria monocytogenes FSL N3-165] gi|258600738|gb|EEW14063.1| deoxyribodipyrimidine photolyase [Listeria monocytogenes FSL N3-165] Length = 467 Score = 407 bits (1046), Expect = e-111, Method: Composition-based stats. Identities = 170/480 (35%), Positives = 244/480 (50%), Gaps = 27/480 (5%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 ++W R DLR++DNKALY AC D ++ +F P Q+ + +AS+ Sbjct: 2 TSVMWFRRDLRVSDNKALYHACKEDD--LLLLFQVNPAQFIT---GSPSHQAFFASVAHF 56 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQ-RVTKLFYNRQYEINEVRRDKLLEKRL 127 ++ K + Q F + +E L K+++NR RD+ + Sbjct: 57 KQE-VDKTALLQIM----FGEPVECLKQLKETLPSWDKVYFNRDETGYGAERDEAAKTFF 111 Query: 128 QHR-VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 + + ++F DS L + + YK++TP+ K + + + + Sbjct: 112 DEQEIEVQAFHDSYLHSAEEVKKSPTEYYKIFTPYYKKWREEIKETPFKVTLKADNIRKE 171 Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246 + P +F + P+ GE+ A L F K V Y + RD P + TS LS Sbjct: 172 NLFPKYEEQFAEMTCDL--PILDSGEKTANTRLANFIKHDVADYDKARDFPELDKTSHLS 229 Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP 306 YL G +S R W L+E + G + EL WR+FY + +P+ +P Sbjct: 230 RYLRTGEISVRTIWQALQE------NEATEGRAIFEKELCWRDFYNMIYVSFPNQ-KNEP 282 Query: 307 FIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLL 366 IEW + +AW++G TGFP++DAAMRQL GWMHNRLRM+TASFL KDLL Sbjct: 283 IQENYRFIEWENNREFFKAWQEGKTGFPLVDAAMRQLKETGWMHNRLRMVTASFLTKDLL 342 Query: 367 VDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIR 426 +DWR GE+YF L+D D ASN GGWQWAASTG D+VPYFRIFNPTIQ ++FDP G FIR Sbjct: 343 IDWRFGEKYFQQMLIDYDPASNIGGWQWAASTGTDAVPYFRIFNPTIQSQKFDPTGKFIR 402 Query: 427 HWLPELNNVPTQYIHAPHSWLDKND------LSLNYPLPIVDHKKACHHTLNQYYAAKKQ 480 ++ EL N+P +YIH P + L +YP PIVDHK+ + +Y +K+ Sbjct: 403 KYVKELANLPDKYIHQPEKMSETEQKEYGLLLGKDYPFPIVDHKERRKLAIARYEFSKEH 462 >gi|154250969|ref|YP_001411793.1| deoxyribodipyrimidine photo-lyase [Parvibaculum lavamentivorans DS-1] gi|154154919|gb|ABS62136.1| Deoxyribodipyrimidine photo-lyase [Parvibaculum lavamentivorans DS-1] Length = 475 Score = 407 bits (1046), Expect = e-111, Method: Composition-based stats. Identities = 164/491 (33%), Positives = 244/491 (49%), Gaps = 32/491 (6%) Query: 6 AMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASL 65 + S ++W R DLR+ A + VI +FI P A +++ SL Sbjct: 2 SASPAILWFRRDLRLD--ANPALAAAMARGPVIPLFILDPAD----RPGAASRWWLHGSL 55 Query: 66 LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125 + +SL++ G + S E L + + +F+NR YE + + RDK L+ Sbjct: 56 EALGESLARLGAPLILRRGSPS----EILPALTAETDARAIFWNRLYEPHLIGRDKALKS 111 Query: 126 RL-QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL 184 L + +SF+ S+L P + + YKV+TPF ++L Q P PA + Sbjct: 112 ALTAQGIEVESFNGSLLAEPWQVRTQSGDPYKVFTPFWRSLAQM-----PFPAPHPAPKK 166 Query: 185 TGPVTPSNIPRFFDYPFQAIDP--------MFPIGEQNALHILRKFCKEKVYYYVEQRDI 236 ++P + + P + GE+ A L F + + Y E RDI Sbjct: 167 CAGLSPLPSDDLASWSLRPSKPDWAGGLRATWQPGERAAQSRLAAFIDDAMVGYREARDI 226 Query: 237 PAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMA 296 PA +GTS+LSP+L G +SP + W+ + E ++L EL WR+F HL+ Sbjct: 227 PAAEGTSRLSPHLHWGEVSPHRIWSAV-EAATAAHPSGAEAGRAFLRELAWRDFAHHLLF 285 Query: 297 FYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMI 356 +P + + + W +D+ AW +G TG+PI+DA MRQL GWMHNR+RMI Sbjct: 286 HWPDIAREN-WKSQFDAFPWKEDTAAFTAWTKGETGYPIVDAGMRQLWQTGWMHNRVRMI 344 Query: 357 TASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGK 416 ASFLVK L+VDWR G E+F + L+D DLA N WQW A +G D+ PYFRIFNP +QG+ Sbjct: 345 AASFLVKHLMVDWRRGAEWFENTLVDADLAVNRASWQWVAGSGADAAPYFRIFNPVLQGE 404 Query: 417 RFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKN------DLSLNYPLPIVDHKKACHHT 470 +FD G ++R ++PEL + ++IH P + D L YP P+VDH A Sbjct: 405 KFDGDGAYVRAFVPELAKLDARFIHKPWAAPDAELSKAGIALGRTYPKPLVDHGHARARA 464 Query: 471 LNQYYAAKKQS 481 L Y + +S Sbjct: 465 LAAYEQIRNES 475 >gi|254991721|ref|ZP_05273911.1| DNA photolyase [Listeria monocytogenes FSL J2-064] Length = 467 Score = 407 bits (1046), Expect = e-111, Method: Composition-based stats. Identities = 170/481 (35%), Positives = 243/481 (50%), Gaps = 27/481 (5%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 ++W R DLR+ DNKALY AC D ++ +F P Q+ + +AS+ Sbjct: 2 TSVMWFRRDLRVNDNKALYHACKEDD--LLLLFQVNPAQFIT---GSPSHQAFFASVAHF 56 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQ-RVTKLFYNRQYEINEVRRDKLLEKRL 127 ++ + + H F + IE K+++NR RD+ + Sbjct: 57 KQEIDK-----TAHLQIMFGEPIECFQQLKDTLPSWDKVYFNRDETGYGAERDEAAQAFF 111 Query: 128 -QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 + ++ ++F DS L + + YK++TP+ K + + + + Sbjct: 112 DEQKIEVQAFHDSYLHSAEEVKKSPTEYYKIFTPYYKKWREEIKETPFKVTLKHENIRKE 171 Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246 + +F + P+ IGE+ A L F K V Y + RD P + TS LS Sbjct: 172 SLFLKYEEQFAEMTSDL--PILDIGERAANTRLANFIKHDVADYDKARDFPELDKTSHLS 229 Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP 306 YL G +S R W L+E + G ++ EL WR+FY + +P+ +P Sbjct: 230 RYLRTGEISIRTIWQSLQE------TEATEGRATFEKELCWRDFYNMIYVSFPNQ-KNEP 282 Query: 307 FIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLL 366 IEW + +AW++G TGFP++DAAMRQL GWMHNRLRMITASFL KDLL Sbjct: 283 IQENYRFIEWENNREFFKAWQEGKTGFPLVDAAMRQLKETGWMHNRLRMITASFLTKDLL 342 Query: 367 VDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIR 426 +DWR GE+YF L+D D ASN GGWQWAASTG DSVPYFRIFNPT Q ++FD G FIR Sbjct: 343 IDWRFGEKYFQQMLIDYDPASNIGGWQWAASTGTDSVPYFRIFNPTTQSQKFDSTGKFIR 402 Query: 427 HWLPELNNVPTQYIHAPHSWLDKND------LSLNYPLPIVDHKKACHHTLNQYYAAKKQ 480 ++ EL N+P +YIH P + L +YP PIVDHK+ + +Y +K+ Sbjct: 403 KYVKELANLPDKYIHQPEKMSETEQKEHGLLLGKDYPFPIVDHKERRKLAIARYEFSKEH 462 Query: 481 S 481 S Sbjct: 463 S 463 >gi|16330382|ref|NP_441110.1| deoxyribopyrimidine photolyase [Synechocystis sp. PCC 6803] gi|2499552|sp|Q55081|PHR_SYNY3 RecName: Full=Deoxyribodipyrimidine photo-lyase; AltName: Full=DNA photolyase; AltName: Full=Photoreactivating enzyme gi|1652872|dbj|BAA17790.1| deoxyribopyrimidine photolyase [Synechocystis sp. PCC 6803] gi|1771978|gb|AAB81109.1| DNA photolyase [Synechocystis sp. PCC 6803] Length = 488 Score = 407 bits (1045), Expect = e-111, Method: Composition-based stats. Identities = 169/487 (34%), Positives = 243/487 (49%), Gaps = 17/487 (3%) Query: 1 MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHF 60 M + + L+W R DLR+ D+ AL A AK++ VF + + ++ + + Sbjct: 10 MSDQSDHPLILLWHRRDLRLNDHLALAKA-RQKTAKIVGVFCLDNKILQAEDMAPARVAY 68 Query: 61 IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120 + L +Q + G Q D ++ L + + E +RD Sbjct: 69 LLGCLQSLQDHYQRLGSELLVFQA----DPVQLLPKLANTLGAHGVTWTLDTEPYAQKRD 124 Query: 121 KLLEKRLQHRVICK-SFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNL------VQAD 173 + + L+ R + + D ++ PG +L A Y VYTPF K Q D Sbjct: 125 LAVAQALRERGLAIATEWDQLMHHPGEVLTQAGSPYTVYTPFWKNWSQLPKTSPVPTPKD 184 Query: 174 LRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPM-FPIGEQNALHILRKFCKEKVYYYVE 232 L+ L P+ P IP+ D F P+ GE+ A L F + Y + Sbjct: 185 LQGLTPAEKEKLAPLEPLAIPQLADLGFIWDQPLPLTPGEEAAEQRLDWFVAHGLEEYQQ 244 Query: 233 QRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIK-PKSGAFSWLNELIWREFY 291 R+ PA+ GTSQLS L GV+SPR W E + + ++ +W EL WREFY Sbjct: 245 NRNFPALDGTSQLSAALKFGVISPRTLWQTTLEAWEQSRSEEARASIETWQQELAWREFY 304 Query: 292 RHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHN 351 +H + +P++ G P+ ++ W ++ QAW +G TG+PIIDAAM QLN GWMHN Sbjct: 305 QHCLYSFPALAQG-PYRSPFQEFPWEENQDHFQAWCEGRTGYPIIDAAMAQLNQTGWMHN 363 Query: 352 RLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNP 411 R RMI ASFL+KDL+++W+ GE YFM L DGDLA+NNGGWQW+AS+G D P RIFNP Sbjct: 364 RCRMIVASFLIKDLILNWQWGELYFMQTLYDGDLAANNGGWQWSASSGMDPKP-LRIFNP 422 Query: 412 TIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTL 471 Q ++FDP+G +IR WLP+L T + + S+NYP PIVDH + Sbjct: 423 HTQAQKFDPEGEYIRTWLPQLARFDTGDLLT-GKLTPGSRRSVNYPEPIVDHNQQQREFK 481 Query: 472 NQYYAAK 478 +Y K Sbjct: 482 RRYQLVK 488 >gi|254824139|ref|ZP_05229140.1| deoxyribodipyrimidine photolyase [Listeria monocytogenes FSL J1-194] gi|254932137|ref|ZP_05265496.1| deoxyribodipyrimidine photolyase [Listeria monocytogenes HPB2262] gi|255521880|ref|ZP_05389117.1| DNA photolyase [Listeria monocytogenes FSL J1-175] gi|293583693|gb|EFF95725.1| deoxyribodipyrimidine photolyase [Listeria monocytogenes HPB2262] gi|293593371|gb|EFG01132.1| deoxyribodipyrimidine photolyase [Listeria monocytogenes FSL J1-194] gi|328475764|gb|EGF46505.1| deoxyribodipyrimidine photolyase [Listeria monocytogenes 220] gi|332311009|gb|EGJ24104.1| Deoxyribodipyrimidine photolyase [Listeria monocytogenes str. Scott A] Length = 467 Score = 407 bits (1045), Expect = e-111, Method: Composition-based stats. Identities = 169/481 (35%), Positives = 244/481 (50%), Gaps = 27/481 (5%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 ++W R DLR+ DNKALY AC D ++ +F P Q+ + +AS+ Sbjct: 2 TSVMWFRRDLRVNDNKALYHACKEDD--LLLLFQVNPAQFIT---GSPSHQAFFASVAHF 56 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQ-RVTKLFYNRQYEINEVRRDKLLEKRL 127 ++ + + H F + IE K+++NR +RD+ + Sbjct: 57 KQEIDK-----TAHLQIMFGEPIECFQQLKDTLPSWDKVYFNRDETGYGAKRDEAAQAFF 111 Query: 128 -QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 + ++ ++F DS L + + YK++TP+ K + + + + Sbjct: 112 DEQKIEVQAFHDSYLHSAEEVKKSPTEYYKIFTPYYKKWREEIKETPFKVTLKHENIRKE 171 Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246 + +F + P+ IGE+ A L F K V Y + RD P + TS LS Sbjct: 172 SLFLKYEEQFAEMTSDL--PILDIGERAANTRLANFIKHDVADYDKARDFPELDKTSHLS 229 Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP 306 YL G +S R W L+E + G ++ EL WR+FY + +P+ +P Sbjct: 230 RYLRTGEISIRTIWQTLQE------TEATEGRATFEKELCWRDFYNMIYVSFPNQ-KNEP 282 Query: 307 FIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLL 366 IEW + +AW++G TGFP++DAAMRQL GWMHNRLRMITASFL KDLL Sbjct: 283 IQENYRFIEWENNREYFKAWQEGKTGFPLVDAAMRQLKETGWMHNRLRMITASFLTKDLL 342 Query: 367 VDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIR 426 +DWR GE+YF L+D D ASN GGWQWAASTG D+VPYFRIFNPT Q ++FD G FIR Sbjct: 343 IDWRFGEKYFQQMLIDYDPASNIGGWQWAASTGTDAVPYFRIFNPTTQSQKFDSTGKFIR 402 Query: 427 HWLPELNNVPTQYIHAPHSWLDKND------LSLNYPLPIVDHKKACHHTLNQYYAAKKQ 480 ++ EL N+P +YIH P + L +YP PIVDHK+ + +Y +K+ Sbjct: 403 KYVKELANLPDKYIHQPEKMSETEQKEHGLLLGKDYPFPIVDHKERRKLAIARYEFSKEH 462 Query: 481 S 481 S Sbjct: 463 S 463 >gi|109898496|ref|YP_661751.1| deoxyribodipyrimidine photolyase [Pseudoalteromonas atlantica T6c] gi|109700777|gb|ABG40697.1| deoxyribodipyrimidine photo-lyase type I [Pseudoalteromonas atlantica T6c] Length = 481 Score = 407 bits (1045), Expect = e-111, Method: Composition-based stats. Identities = 188/475 (39%), Positives = 261/475 (54%), Gaps = 12/475 (2%) Query: 10 HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69 LVWLR DLR N A+ A N D V AV+ T EQW + +S+ + IY L+ + Sbjct: 3 ALVWLRTDLRSKWNSAIDYAVDNHD-NVTAVYFTTKEQWDTYNLSSHKVALIYQRLVNLH 61 Query: 70 KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH 129 K L+++ I Q + S + L C + VT ++ N +YE +E +RD ++ L+ Sbjct: 62 KELAERNIELQVIEGSIYQAIPVRLKDICTKIGVTHVYCNAEYEWDERQRDLAVKNILKK 121 Query: 130 -RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188 + F D+ L+ P I+N + YKV+TP+ K + +Q TG Sbjct: 122 IDIPLAMFHDTCLVKPTEIMNLKNEPYKVFTPYFKRWLDTTLQQLPGVPDNHKASDTGLS 181 Query: 189 TPSNIPRFFD--------YPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ 240 +N D + +P L F E Y + RDIP++ Sbjct: 182 QSANDSIQIDSLLKTNEIEISKEFSTNWPTTAAKITKKLNAFIIEFSPVYPKNRDIPSVD 241 Query: 241 GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPS 300 GTS++SPYLSIG LSP QC + +E+ D + + GA++W+ E+ WR+FYR++M +P Sbjct: 242 GTSKVSPYLSIGALSPAQCLFHVLQEYGDDALSLEHGAYTWIKEIAWRDFYRYVMYHFPH 301 Query: 301 VCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASF 360 V G PF + +W + H AWK G TG+PI+DAAM L GWMHNRLRMI ASF Sbjct: 302 VSRGLPFQKHYQHFKWESNQHHFDAWKAGKTGYPIVDAAMIALRETGWMHNRLRMIVASF 361 Query: 361 LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDP 420 K LL+ W+ E+YFMSQL+DGD ASNNGGWQW+AS G D+ PYFRIFNPT Q +RFDP Sbjct: 362 YCKHLLLPWKWAEDYFMSQLIDGDYASNNGGWQWSASVGTDAAPYFRIFNPTTQSERFDP 421 Query: 421 QGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYY 475 +G FI+ WLPEL ++ + IH P D + Y LPIV+HK + T Q+ Sbjct: 422 KGEFIKTWLPELEHLSPKQIHEPSKHCDVQRIG--YALPIVEHKASVMRTKEQFK 474 >gi|295706162|ref|YP_003599237.1| FAD binding domain of DNA photolyase [Bacillus megaterium DSM 319] gi|294803821|gb|ADF40887.1| FAD binding domain of DNA photolyase [Bacillus megaterium DSM 319] Length = 475 Score = 407 bits (1045), Expect = e-111, Method: Composition-based stats. Identities = 155/482 (32%), Positives = 256/482 (53%), Gaps = 20/482 (4%) Query: 8 SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67 +VW+R D R+ DN AL+ A V+ V+I + + + + +++ +L Sbjct: 3 KTIIVWIRKDFRLVDNPALFHAAKEG--MVVPVYIHD--DYEESSMGSASKWWLHHALND 58 Query: 68 VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127 + S+ + + + D L Q +++NR+YE + ++RDK L+ Sbjct: 59 FKNSIEKIQGTLIVQKGNPKD----VLQKLLHQTNAQDIYWNRRYEPHVLKRDKELQAFF 114 Query: 128 -QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVP--AIRL 184 + ++ ++F+ +L P I YKV+T + KA ++ V + ++ + + + Sbjct: 115 SEQQINIRTFEGFLLHEPWKITKENGDPYKVFTAYYKASQKHSVSSAVKKVTSIQASSKP 174 Query: 185 TGPVTPSNIPRFFDYPF-QAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS 243 ++ S++ P+ + I + E+ A+ + + F K K+ +Y + RD PA S Sbjct: 175 VESLSVSDLDLLPSIPWDETIKSTWEATEKGAIDVFKTFLKNKLLHYEKGRDFPAEALNS 234 Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKP-KSGAFSWLNELIWREFYRHLMAFYPSVC 302 LSPY + G LS R ++ L+ + + + A ++ +LIWR+F L+ +P Sbjct: 235 FLSPYFATGQLSARVLYHYLRTKAEKVSSDAFEQQAEMFIRQLIWRDFAYQLLYHFPHTT 294 Query: 303 MGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLV 362 +P ++ +W + LQAWK G TG+P++DA MR+L G+MHNR+RMI ASFLV Sbjct: 295 T-EPLNEKFKQFQWADGNEELQAWKNGKTGYPLVDAGMRELWETGFMHNRVRMIAASFLV 353 Query: 363 KDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQG 422 K LL+ W+ G +F L+D DLA+N GWQW A +G D+ PYFRIFNP Q ++FD +G Sbjct: 354 KHLLIHWKHGANWFFDTLVDADLANNTMGWQWVAGSGADAAPYFRIFNPITQSEKFDKEG 413 Query: 423 TFIRHWLPELNNVPTQYIHAPHS----WLDKNDLSLN--YPLPIVDHKKACHHTLNQYYA 476 +I+ WLPEL ++P+ YIH P L+K +++LN YP PIVDHK A L Y Sbjct: 414 EYIKKWLPELKHIPSSYIHKPWEAPADVLEKANVTLNKTYPTPIVDHKAARERALEHYQH 473 Query: 477 AK 478 K Sbjct: 474 IK 475 >gi|47093329|ref|ZP_00231098.1| deoxyribodipyrimidine photolyase [Listeria monocytogenes str. 4b H7858] gi|226223217|ref|YP_002757324.1| DNA photolyase [Listeria monocytogenes Clip81459] gi|47018298|gb|EAL09062.1| deoxyribodipyrimidine photolyase [Listeria monocytogenes str. 4b H7858] gi|225875679|emb|CAS04382.1| Putative DNA photolyase [Listeria monocytogenes serotype 4b str. CLIP 80459] gi|328467416|gb|EGF38492.1| deoxyribodipyrimidine photolyase [Listeria monocytogenes 1816] Length = 467 Score = 407 bits (1045), Expect = e-111, Method: Composition-based stats. Identities = 169/481 (35%), Positives = 244/481 (50%), Gaps = 27/481 (5%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 ++W R DLR+ DNKALY AC D ++ +F P Q+ + +AS+ Sbjct: 2 TSVMWFRRDLRVNDNKALYHACKEDD--LLLLFQVNPAQFIT---GSPSHQAFFASVAHF 56 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQ-RVTKLFYNRQYEINEVRRDKLLEKRL 127 ++ + + H F + IE K+++NR +RD+ + Sbjct: 57 KQEIDK-----TAHLQIMFGEPIECFQQLKDSLPSWDKVYFNRDETGYGAKRDEAAQAFF 111 Query: 128 -QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 + ++ ++F DS L + + YK++TP+ K + + + + Sbjct: 112 DEQKIEVQAFHDSYLHSAEEVKKSPTEYYKIFTPYYKKWREEIKETPFKVTLKHENIRKE 171 Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246 + +F + P+ IGE+ A L F K V Y + RD P + TS LS Sbjct: 172 SLFLKYEEQFAEMTSDL--PILDIGERAANTRLANFIKHDVADYDKARDFPELDKTSHLS 229 Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP 306 YL G +S R W L+E + G ++ EL WR+FY + +P+ +P Sbjct: 230 RYLRTGEISIRTIWQTLQE------TEATEGRATFEKELCWRDFYNMIYVSFPNQ-KNEP 282 Query: 307 FIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLL 366 IEW + +AW++G TGFP++DAAMRQL GWMHNRLRMITASFL KDLL Sbjct: 283 IQENYRFIEWENNREYFKAWQEGKTGFPLVDAAMRQLKETGWMHNRLRMITASFLTKDLL 342 Query: 367 VDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIR 426 +DWR GE+YF L+D D ASN GGWQWAASTG D+VPYFRIFNPT Q ++FD G FIR Sbjct: 343 IDWRFGEKYFQQMLIDYDPASNIGGWQWAASTGTDAVPYFRIFNPTTQSQKFDSTGKFIR 402 Query: 427 HWLPELNNVPTQYIHAPHSWLDKND------LSLNYPLPIVDHKKACHHTLNQYYAAKKQ 480 ++ EL N+P +YIH P + L +YP PIVDHK+ + +Y +K+ Sbjct: 403 KYVKELANLPDKYIHQPEKMSETEQKEHGLLLGKDYPFPIVDHKERRKLAIARYEFSKEH 462 Query: 481 S 481 S Sbjct: 463 S 463 >gi|221134512|ref|ZP_03560817.1| DNA photolyase [Glaciecola sp. HTCC2999] Length = 487 Score = 407 bits (1045), Expect = e-111, Method: Composition-based stats. Identities = 165/494 (33%), Positives = 249/494 (50%), Gaps = 28/494 (5%) Query: 6 AMSVHLVWLRNDLRITDNKALYAACHNSDAK--VIAVFIATPEQWRQHGISARQSHFIYA 63 + + ++W R+DLR+ DN ALY A + V+ +FI + +++ Sbjct: 2 SHPLVIMWFRHDLRLNDNPALYRAIELAGEHGTVLPIFIHDTSAPDLAKLGEASQWWLHQ 61 Query: 64 SLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLL 123 SL + S Q +FQ D + ++S Q T + +NR YE ++ RD + Sbjct: 62 SLASLSASTGQHLQLFQ-------GDPLAIIESLINQYDATHVIWNRGYEPWQITRDSHI 114 Query: 124 EKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPF-RKALIQNLVQADLRSLPVP-- 180 + L+ V S + +L P +L YKV+TP+ RK + S+P Sbjct: 115 KATLKDCVEVLSCNGHLLWEPMQVLKKDNTPYKVFTPYYRKGCLTRSAPRYPESIPEHLP 174 Query: 181 ---AIRLTGPVTPSNIPRFFDYP----FQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQ 233 I T P + P + I + GEQ A L + +E Y E Sbjct: 175 WATRINSTNIFEPLTLDELKLMPSIQWYDTIAAQWQPGEQGAKDRLATYIEEAAGRYRED 234 Query: 234 RDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRH 293 R++PA++GTS LSP+L G +S W +K+ F D A ++L+EL WREF + Sbjct: 235 RNLPAVKGTSLLSPHLHFGEISVNTVWYAIKDAFKD--DPENEHADTYLSELGWREFSHY 292 Query: 294 LMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRL 353 L+ +P + + F W L+AW+ G TG PI+DA MR+L G+MHNR+ Sbjct: 293 LLFHFPHI-QTENFSSKFNVFPWRSSPEELKAWQFGNTGIPIVDAGMRELYQTGYMHNRV 351 Query: 354 RMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTI 413 RMI SFLVK+LL+DWR GE +F LLD D+A+N+ WQW A +G D+ PYFRIFNP + Sbjct: 352 RMIVGSFLVKNLLIDWREGERWFWDCLLDADMAANSASWQWVAGSGADASPYFRIFNPIL 411 Query: 414 QGKRFDPQGTFIRHWLPELNNVPTQYIHAPHS----WLDKNDL--SLNYPLPIVDHKKAC 467 QG++FD QG +++H+ PEL +P ++IH P L ++ NYP PIVD K + Sbjct: 412 QGEKFDKQGDYVKHYCPELRLLPPKFIHKPWEAPSNILQACNIVLGHNYPKPIVDLKVSR 471 Query: 468 HHTLNQYYAAKKQS 481 L+ + K+ + Sbjct: 472 QRALDAFAVTKEAN 485 >gi|290892787|ref|ZP_06555778.1| deoxyribodipyrimidine photolyase [Listeria monocytogenes FSL J2-071] gi|290557599|gb|EFD91122.1| deoxyribodipyrimidine photolyase [Listeria monocytogenes FSL J2-071] Length = 467 Score = 405 bits (1041), Expect = e-111, Method: Composition-based stats. Identities = 167/481 (34%), Positives = 245/481 (50%), Gaps = 27/481 (5%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 ++W R DLR+ DNKALY AC D ++ +F P Q+ + +AS+ Sbjct: 2 TSVMWFRRDLRVNDNKALYHACKEDD--LLLLFQVNPAQFIT---GSPSHQAFFASVAHF 56 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQ-RVTKLFYNRQYEINEVRRDKLLEKRL 127 ++ + + H F + IE K+++N +RD+ + Sbjct: 57 KQEIDKN-----AHVQIMFGEPIECFQQLKDTLPSWDKVYFNLDETGYGAKRDEAAQAFF 111 Query: 128 -QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 + ++ +SF DS L + + YK++TP+ K + + + + P Sbjct: 112 DEQKIEVQSFHDSYLHSAEEVKKSPTEYYKIFTPYYKKWREEIKETPFKVTLKPENIWKE 171 Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246 + P +F + P+ GE+ A L F K + Y + RD P + TS LS Sbjct: 172 SLFPKYEEQFAEMTCDL--PILDSGERAANTRLANFIKHDIADYDKARDFPELDKTSHLS 229 Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP 306 YL G +S R W L+E + G ++ EL WR+FY + +P+ +P Sbjct: 230 RYLRTGEISIRTIWQELQE------TEATEGRATFEKELCWRDFYNMIYVSFPNQ-KNEP 282 Query: 307 FIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLL 366 IEW + +AW++G TGFP++DAAMRQL GWMHNRLRMITASFL KDLL Sbjct: 283 IQENYRFIEWENNREFFKAWQEGKTGFPLVDAAMRQLKETGWMHNRLRMITASFLTKDLL 342 Query: 367 VDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIR 426 +DWR GE+YF L+D D ASN GGWQWAASTG D+VPYFRIFNPT Q ++FDP FIR Sbjct: 343 IDWRFGEKYFQQMLIDYDPASNIGGWQWAASTGTDAVPYFRIFNPTTQSQKFDPTAKFIR 402 Query: 427 HWLPELNNVPTQYIHAPHSWLDKND------LSLNYPLPIVDHKKACHHTLNQYYAAKKQ 480 ++ EL N+P +YIH P + L +YP P++DHK+ + +Y +K++ Sbjct: 403 KYVKELANLPDKYIHQPEKMSETEQKEYGLLLGKDYPFPLIDHKERRKLAIARYEFSKER 462 Query: 481 S 481 S Sbjct: 463 S 463 >gi|119503382|ref|ZP_01625466.1| DNA photolyase [marine gamma proteobacterium HTCC2080] gi|119461028|gb|EAW42119.1| DNA photolyase [marine gamma proteobacterium HTCC2080] Length = 481 Score = 405 bits (1041), Expect = e-111, Method: Composition-based stats. Identities = 157/481 (32%), Positives = 228/481 (47%), Gaps = 21/481 (4%) Query: 10 HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69 L W R+DLR+ D L AA VI VF+ + +++ SL + Sbjct: 5 SLYWFRHDLRLADLPGLIAAAKAG--TVIPVFVWDEALGGDWSLGGASQWWLHHSLQSLA 62 Query: 70 KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ- 128 L+ G + + L+ + +F +RQY+ + ++ + Sbjct: 63 ADLNGLGSRLILRRGETSKVIAKLLE----ETGAQNVFASRQYQPWAADTENAVKAVTES 118 Query: 129 HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQAD-----LRSLPVPAIR 183 K + ++L P +I +KV+TPF +A ++ L + P + Sbjct: 119 AGGDFKRYPGTLLFEPENIRTGGGTPFKVFTPFWRAALKQPAPPQPQPVPLLTSPDEWPQ 178 Query: 184 LTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS 243 T P+ ++ + ++ GE A LR F V Y RD PA TS Sbjct: 179 SDALNTWQLCPKTPNW-ATGWEELWSPGEAGASGALRTFLDSHVDSYGNGRDFPAQPNTS 237 Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCM 303 +LSPYL G +SPRQ W + S +L+E+ WREF HL+A +P++ Sbjct: 238 RLSPYLKFGEISPRQIWWTAQNT-KQSNPDEGSSIDKFLSEIGWREFCNHLVAQFPAMP- 295 Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363 K + P E W L AW+QG TG+PIIDA MR+L G+MHNR+RM+ ASFL K Sbjct: 296 DKAWNPKFEYFPWQSHQRNLSAWQQGNTGYPIIDAGMRELWQTGFMHNRVRMVVASFLTK 355 Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423 LL+ WR+GE++F LLD DLASN WQW +G D+ PYFRIFNP QG++FD G Sbjct: 356 HLLMHWRVGEQWFWDCLLDADLASNACSWQWVGGSGADASPYFRIFNPIAQGEKFDKAGM 415 Query: 424 FIRHWLPELNNVPTQYIHAPHSWLD------KNDLSLNYPLPIVDHKKACHHTLNQYYAA 477 + R W+PEL +P +Y++ P + +L YP PIVDH+ A L Y Sbjct: 416 YTRRWVPELAELPDKYLYKPWEAPELTLKAAGVELGTTYPNPIVDHRTARESALEAYATL 475 Query: 478 K 478 K Sbjct: 476 K 476 >gi|86605487|ref|YP_474250.1| deoxyribodipyrimidine photolyase [Synechococcus sp. JA-3-3Ab] gi|86554029|gb|ABC98987.1| deoxyribodipyrimidine photolyase [Synechococcus sp. JA-3-3Ab] Length = 479 Score = 405 bits (1041), Expect = e-111, Method: Composition-based stats. Identities = 170/480 (35%), Positives = 248/480 (51%), Gaps = 17/480 (3%) Query: 8 SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67 S+ L+W R DLR+ DN AL+ A S +V+ VF+ P+ ++ ++ + F+ +L + Sbjct: 3 SLVLLWHRRDLRLGDNTALHGAAQRS-PQVVPVFVFDPQLLQRADMAPARVAFLLQALQE 61 Query: 68 VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127 +Q+ +Q GI + + D L + +F+N + +++ + L Sbjct: 62 LQERYAQMGIPLLWRRG----DPAVELRQLAAELGAQAVFWNEDLDPWARQQESRVRASL 117 Query: 128 QHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 I S+ D +L PG +L A + Y V+TPF + +++ Sbjct: 118 AEAGIPSFSYQDMLLHGPGEVLTQAGEPYSVFTPFWRRWSSLPKPDPFPIP--KSLQAVS 175 Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKE-KVYYYVEQRDIPAIQGTSQL 245 + +P D F + GE A +L FC+ +++ Y RD PA QGTS L Sbjct: 176 SLKAQPLPSLADLGFVCNQRIPAAGESVAQGLLEDFCQGLRIFEYGRARDFPAEQGTSLL 235 Query: 246 SPYLSIGVLSPRQCWNR-LKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304 SP+L G + R+ W + E + +S +W EL WREFY+H++ +P V G Sbjct: 236 SPHLCWGTIGIRRVWQATCEVEAEARSEEAESSLKTWRQELCWREFYKHVLVHWPHVESG 295 Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364 + + +EW+ QAW G TG+PI+DAAMRQLN GWMHNR RMI ASFL KD Sbjct: 296 -AYRRAFDALEWDNRQDWFQAWCAGQTGYPIVDAAMRQLNETGWMHNRCRMIVASFLTKD 354 Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424 LL+DWR GE YFM +L+DGDLA+NNGGWQW+A G D P RIFNP Q R+DP+G + Sbjct: 355 LLIDWRWGERYFMQKLVDGDLAANNGGWQWSAGVGTDPRP-LRIFNPATQAARYDPEGEY 413 Query: 425 IRHWLPELNNVPTQYI----HAPH-SWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479 IR +LPEL + T + P SW + YP PIVDHK +Y A ++ Sbjct: 414 IRRYLPELAGLDTPALLWVGDDPKGSWALQERRRCGYPDPIVDHKVQQQEFKRRYQAVQQ 473 >gi|3551217|dbj|BAA32807.1| blue-light photoreceptor [Adiantum capillus-veneris] gi|3551223|dbj|BAA32810.1| blue-light photoreceptor [Adiantum capillus-veneris] Length = 637 Score = 405 bits (1040), Expect = e-110, Method: Composition-based stats. Identities = 142/489 (29%), Positives = 229/489 (46%), Gaps = 27/489 (5%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M+ +VW R DLR+ DN AL AA V+ +FI TPE+ Q ++ SL+ Sbjct: 1 MACTIVWFRRDLRVEDNPALVAAVRAG--TVVPLFIWTPEEEGQFLPGRVSRWWLKQSLI 58 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK- 125 Q+ +SL+ G + +I L Q T++F+N Y+ + RD +++ Sbjct: 59 QLHQSLTSLGSPLIMRRA---QSAISVLSQIIKQTGATQVFFNHLYDPVSLVRDHKVKQE 115 Query: 126 RLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLP------V 179 LQ V +F+ +L P I + + + + F + ++ + LP Sbjct: 116 LLQAGVTVTTFNADLLYEPWEINDEQGRPFTTFAGFWSLCMDMAIEPEAPLLPPKRITKW 175 Query: 180 PAIRLTGPVTPSNIPRFFDYPF-QAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPA 238 P I T P+ + + + + G NA L F + Y R Sbjct: 176 PGIAATSPIEDLELENESEKGSNDLLARAWAPGWANADRALEAFVSGPLMEYASNRQKVD 235 Query: 239 IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFS----WLNELIWREFYRHL 294 TS LSP+L G LS R+ ++ ++ + V + + + A +L + RE+ R+L Sbjct: 236 SATTSLLSPHLHYGELSVRKVFHSVRMKQVLWVKEGNADAEESVNLFLRSIGLREYSRYL 295 Query: 295 MAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLR 354 +P + + + W D + W+QG TG+P++DA MR+L GW+HNR+R Sbjct: 296 CFNFP-FTHERSLLSNLKFFPWRNDEGYFKVWRQGRTGYPLVDAGMRELWATGWLHNRIR 354 Query: 355 MITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQ 414 +I +SF VK L + WR G +YF LLD DL S+ GWQ+ + + D +RI NP ++ Sbjct: 355 VIVSSFFVKFLQLPWRWGMKYFWDTLLDADLESDVLGWQYISGSLPDGHELYRIDNPQLE 414 Query: 415 GKRFDPQGTFIRHWLPELNNVPTQYIHAPHSW------LDKNDLSLNYPLPIVDHKKACH 468 G R+DP G ++R WLPEL+ +P+++IH P +L NYP PIV+ A Sbjct: 415 GYRYDPCGEYVRRWLPELSRLPSEWIHHPWDAPPNVLRAAGIELGSNYPRPIVEVAAARE 474 Query: 469 H---TLNQY 474 L + Sbjct: 475 RLEQALAEM 483 >gi|330825562|ref|YP_004388865.1| deoxyribodipyrimidine photo-lyase [Alicycliphilus denitrificans K601] gi|329310934|gb|AEB85349.1| Deoxyribodipyrimidine photo-lyase [Alicycliphilus denitrificans K601] Length = 487 Score = 405 bits (1040), Expect = e-110, Method: Composition-based stats. Identities = 181/488 (37%), Positives = 254/488 (52%), Gaps = 31/488 (6%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQ-HGISARQSHFIYASL 65 S LVWLR DLR D+ ALY A +V F+ + R+ FI+ASL Sbjct: 2 ASTALVWLRRDLRCDDHAALYHALRR-YPRVYCAFVFDTGILDELPSRQDRRVEFIHASL 60 Query: 66 LQVQKSLSQK-------GIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVR 118 L++ + L Q G ++E + + V ++ NR YE + Sbjct: 61 LELHQGLQQLAARSGAPGGGLIVRHGP----ALECIVQLAQELGVQEVLANRDYEPQAIA 116 Query: 119 RDKLLEKRLQHRVICKS-FDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSL 177 RD+ + + L I S + D VLL +L + Y V+TP+++A +Q L L+ Sbjct: 117 RDQSVAQALHALGIAFSDYKDQVLLDRDEVLTQQGRPYSVFTPYKRAWLQRLDDFQLKPY 176 Query: 178 PV--PAIRLTGPVTPSNIPRFFDYPFQAIDPM---FPIGEQNALHILRKFCKEKVYYYVE 232 PV A L P +P D F + P G A +L+ F ++ Y E Sbjct: 177 PVDRYAHHLAPPPADERLPTLSDLSFGPTNLRELPLPSGMSGAQRLLQDFVP-RMAAYQE 235 Query: 233 QRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYR 292 RD P +G S LS +L G +S R +L + GA +WL+EL WR+FY Sbjct: 236 ARDYPGRKGVSYLSVHLRFGTVSIR----QLAALAAKQAAEGCGGAQTWLSELAWRDFYF 291 Query: 293 HLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNR 352 ++ +P V + F P ++++W++ L QAW + TG+P++DAAM QL G+MHNR Sbjct: 292 MILWHHPQVVT-QSFKPEYDRVQWDEAPELWQAWCEARTGYPLVDAAMHQLLQTGYMHNR 350 Query: 353 LRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPT 412 LRM+ ASFL KDL +DWR GE +F L D DLA+NNGGWQWAASTG D+ PYFRIFNP Sbjct: 351 LRMVVASFLTKDLGIDWRRGERFFAQHLNDYDLAANNGGWQWAASTGCDAQPYFRIFNPI 410 Query: 413 IQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKN------DLSLNYPLPIVDHKKA 466 Q +RFDP GTFIR +LPEL VP +IH P + L ++YP+P+VDH +A Sbjct: 411 TQSQRFDPDGTFIRRYLPELVGVPDAHIHFPAAMKPAALAACGLRLGVDYPVPVVDHARA 470 Query: 467 CHHTLNQY 474 TL ++ Sbjct: 471 RQRTLMRF 478 >gi|297585056|ref|YP_003700836.1| deoxyribodipyrimidine photo-lyase [Bacillus selenitireducens MLS10] gi|297143513|gb|ADI00271.1| Deoxyribodipyrimidine photo-lyase [Bacillus selenitireducens MLS10] Length = 474 Score = 405 bits (1040), Expect = e-110, Method: Composition-based stats. Identities = 173/476 (36%), Positives = 246/476 (51%), Gaps = 22/476 (4%) Query: 10 HLVWLRNDLRITDNKALYAA---CHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 +VW RNDLR+ D+ A+ A + D K++ VF + + + + + +L Sbjct: 6 TVVWFRNDLRLNDHPAIDEALTFAEDHDTKILCVFHIHDDLFSHLHT---RHDYFFQTLR 62 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 L + I ++ + L Y V +F ++ Y RD+ + Sbjct: 63 HFSDDLKSRNIAIRFLYGEVTEAFASLLKEYS---GVQAVFASKDYTSFATERDRTVRTL 119 Query: 127 LQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185 + R I + L P SI+ YKVYTP+ K ++ V+ L + +R Sbjct: 120 FEERNIRFTLTVSNHLQEPSSIMKDDGTPYKVYTPYSKQWLKKPVRG-LLAGHEKKLRER 178 Query: 186 GPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245 N + D+ + +GE +A L +F +++ +Y E RD PA+ GTS+L Sbjct: 179 TCEVAMNRGKLDDFLASSDRTWQALGEDHAHERLEQFVTDRLTHYGESRDFPAVAGTSRL 238 Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305 SPYL GVLS Q ++ L K A +++ EL WR+FY + + ++ + Sbjct: 239 SPYLKTGVLSVAQVYHAA----YPLFEKGDDAAVTFIKELAWRDFYTMIHYHFENL-RNQ 293 Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365 F + WN+D LL+ WKQG TGFP+IDAAMRQLNT GWMHNRLRM TASFL KD Sbjct: 294 EFQEKYRTLSWNEDDELLEYWKQGQTGFPLIDAAMRQLNTTGWMHNRLRMATASFLTKDY 353 Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425 +DWR GE YF +L+D D ASN GGWQWAAS G D+VPYFR+FNP Q KRFDP+GTFI Sbjct: 354 RIDWREGERYFAEKLIDYDEASNTGGWQWAASVGTDAVPYFRVFNPVRQSKRFDPEGTFI 413 Query: 426 RHWLPELNNVPTQYIHAPHSWLDKND------LSLNYPLPIVDHKKACHHTLNQYY 475 R ++PEL +VP IH P + + +YPLP VDH +A + + Sbjct: 414 RQYVPELKDVPASSIHEPAKLSEAKQKEYRVRIGTDYPLPTVDHSEARKAAITMFE 469 >gi|189346874|ref|YP_001943403.1| Deoxyribodipyrimidine photo-lyase [Chlorobium limicola DSM 245] gi|189341021|gb|ACD90424.1| Deoxyribodipyrimidine photo-lyase [Chlorobium limicola DSM 245] Length = 473 Score = 404 bits (1039), Expect = e-110, Method: Composition-based stats. Identities = 159/484 (32%), Positives = 232/484 (47%), Gaps = 28/484 (5%) Query: 10 HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69 + W R DLR+ DN +LY A V+ V+I + +++ SL + Sbjct: 6 TIHWFRQDLRLEDNPSLYYAALKG--SVLPVYILDDRNAGDFRMGGANRWWLHHSLESLN 63 Query: 70 KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH 129 +SL + + D +E L + TK+++NR YE + RD L+ +L+ Sbjct: 64 RSLQGRLTLL-------MGDPLEILPALAASTGATKVYWNRCYEPWRISRDTRLKHKLRE 116 Query: 130 RVI-CKSFDDSVLLPPGSILNHALQMYKVYTPF-RKALIQNLVQADLRSLPVPAIRLTGP 187 + I +S++ S+L P + YKV+TPF RK + LPV + P Sbjct: 117 QGITAESYNGSMLWEPWEVHKSDGTPYKVFTPFYRKGCLSAASPRMPLPLPVKLDCPSPP 176 Query: 188 VTPSNIPRFFDYPF----QAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS 243 + P + ++P + IGE AL L F K + Y E RD PA S Sbjct: 177 EESLPLEALGLLPRIRWDRQLEPHWTIGENGALERLAIFLKHGLPGYREGRDFPARPNVS 236 Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCM 303 +LSP L G +SP Q W+ + + +EL WREF L+ P + Sbjct: 237 RLSPSLHFGEISPNQAWHGAIAAGSGI------DLDHFQSELAWREFSYSLLYHNPGLPE 290 Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363 K ++ W ++ L W+QG TG+PI+DA MR+L G+MHNR+RM+ SFLVK Sbjct: 291 -KNLQKSFDRFPWEENPAALMRWQQGLTGYPIVDAGMRELWQTGYMHNRIRMVAGSFLVK 349 Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423 +LL+ W GE +F L D DLA N+ WQW A G D+ PYFRIFNP QG++FD G+ Sbjct: 350 NLLLHWHEGESWFRDCLADADLAINSASWQWIAGCGADAAPYFRIFNPVTQGQKFDADGS 409 Query: 424 FIRHWLPELNNVPTQYIHAPH----SWLDKNDL--SLNYPLPIVDHKKACHHTLNQYYAA 477 + R +LPEL +P +Y+ +P S L + YP PIVD K + L Y Sbjct: 410 YTRRYLPELARLPDRYLFSPWEAPVSVLADAGIATGKTYPEPIVDLKSSRRQALEAYALT 469 Query: 478 KKQS 481 + S Sbjct: 470 RNHS 473 >gi|27904772|ref|NP_777898.1| deoxyribodipyrimidine photolyase [Buchnera aphidicola str. Bp (Baizongia pistaciae)] gi|46396630|sp|Q89AJ9|PHR_BUCBP RecName: Full=Deoxyribodipyrimidine photo-lyase; AltName: Full=DNA photolyase; AltName: Full=Photoreactivating enzyme gi|27904170|gb|AAO27003.1| deoxyribodipyrimidine photolyase [Buchnera aphidicola str. Bp (Baizongia pistaciae)] Length = 478 Score = 404 bits (1038), Expect = e-110, Method: Composition-based stats. Identities = 207/475 (43%), Positives = 304/475 (64%), Gaps = 5/475 (1%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M+V+L+W RNDLR++DN AL+ +C N+ + V+A+FIATP+QW +H ++ ++ IY +++ Sbjct: 1 MNVNLMWFRNDLRLSDNSALHFSCRNNASTVLALFIATPKQWERHCLAPKKKMLIYKNIV 60 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 ++K +++ GI+F Y++ +++ +S ++ +C +VT +F+N +YE E +RDK+++K+ Sbjct: 61 ALKKKITELGIIFYYYESTDYLESTNYIIEFCKIHKVTSIFFNLEYEFYERQRDKIIKKK 120 Query: 127 LQHRVICKS-FDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIR-L 184 L+ I + F DSVL+ PGSI N +MYK ++ F+ I+ L P P + L Sbjct: 121 LKKNNIIINCFHDSVLITPGSIKNSYGKMYKKFSYFKYKCIKQLQLNIPSCFPKPQNKNL 180 Query: 185 TGPVTPSNIPRFFDYPFQAIDP-MFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS 243 + F + D +FPIGE L+ F K Y ++I + TS Sbjct: 181 HDHYSLDFTIPIFHTYLEKFDANIFPIGEDIVYEKLKFFIKYAFNKYNFDQEIFELNSTS 240 Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCM 303 LS +LSIGV+SPRQC L +E+ D++ K + W+NEL+WREFY+HL+ FYP++ Sbjct: 241 MLSAHLSIGVISPRQCVTLLFKEYPDIIHKLEE--CKWINELLWREFYQHLLYFYPNIGQ 298 Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363 + W +I+W+ + + L WKQG TG+PIIDA MRQL +GW+ NRLRMITASFLVK Sbjct: 299 NQSLYHWENRIKWDNNLYYLNLWKQGNTGYPIIDAGMRQLKQLGWISNRLRMITASFLVK 358 Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423 +LL+DWR GEEYFMSQL+DGD ASNNG WQW AS G DS+PYFRIFNP +Q K+FD Sbjct: 359 NLLIDWRKGEEYFMSQLIDGDFASNNGNWQWIASVGTDSMPYFRIFNPMLQSKKFDINAK 418 Query: 424 FIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478 FIR ++PEL+NV T IH P N + YP PI+++ + TL + AK Sbjct: 419 FIRKYIPELSNVSTYNIHNPCDNNKTNKIHSKYPQPIINYYHSKKKTLLVFKHAK 473 >gi|160902458|ref|YP_001568039.1| deoxyribodipyrimidine photo-lyase [Petrotoga mobilis SJ95] gi|160360102|gb|ABX31716.1| Deoxyribodipyrimidine photo-lyase [Petrotoga mobilis SJ95] Length = 462 Score = 404 bits (1038), Expect = e-110, Method: Composition-based stats. Identities = 157/470 (33%), Positives = 238/470 (50%), Gaps = 26/470 (5%) Query: 8 SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGI-SARQSHFIYASLL 66 + L R DLR+ DN +L A + + +VI FI Q + + S F+ A L Sbjct: 16 KIGLHIFRRDLRLEDNTSLIEALQSCE-RVIPAFIFDDRQIKDNDYKSDNAVQFMIACLK 74 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 ++ L Q + + + ++S + +F N+ Y +RD ++ Sbjct: 75 ELNDQLHQLNARLYFFEGLT----AKVVESLIKTLGIEAVFVNKDYTPFSKKRDNEIKAI 130 Query: 127 LQ-HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185 + RV K D +L P +L Y +T F K + V+ ++ T Sbjct: 131 CERERVDFKEHFDVLLHEPTEVLKDNGMPYIKFTDFLKKSKKIDVREPQKN--KFKNYFT 188 Query: 186 GPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245 ++ S + +P Q + + G + L + + K + Y E R+ P+I GT++L Sbjct: 189 EEISSSIALQVDKFP-QNENLILKGGRKEGLSYIERIVK--LKNYSETRNTPSIDGTTKL 245 Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305 SP+L G +S R+ + ++ E F + +L WR+F+ H++ +P V +G Sbjct: 246 SPHLKFGTVSVREVYGKVNENF--------GNEHEIITQLHWRDFFTHILYHFPHV-LGN 296 Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365 F +I+W D +AW G TG+PI+DA MRQLN GWMHNR+RMIT SFLVKDL Sbjct: 297 SFKEKYNQIQWENDVDKFKAWCTGRTGYPIVDAGMRQLNLTGWMHNRVRMITGSFLVKDL 356 Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425 +DWR GE+YF +L+D D A NNG WQW ASTG D+ P+FRIFNP +Q ++FDP+ +I Sbjct: 357 HIDWRWGEKYFAQRLVDYDPAINNGNWQWVASTGCDAQPFFRIFNPILQQQKFDPECNYI 416 Query: 426 RHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYY 475 + WLPEL N+ + IH + D ++YP PIVDHK A Y Sbjct: 417 KTWLPELTNLNLEQIHTLNIPKD-----IDYPTPIVDHKVASEKAKKLYK 461 >gi|331005568|ref|ZP_08328940.1| Deoxyribodipyrimidine photolyase [gamma proteobacterium IMCC1989] gi|330420618|gb|EGG94912.1| Deoxyribodipyrimidine photolyase [gamma proteobacterium IMCC1989] Length = 480 Score = 404 bits (1037), Expect = e-110, Method: Composition-based stats. Identities = 185/479 (38%), Positives = 261/479 (54%), Gaps = 23/479 (4%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 ++LVWLRNDLR+ DN ALY A H D V+ TPEQWRQH + + L+ V Sbjct: 1 MNLVWLRNDLRLEDNPALYHATHQGDT--CCVYSITPEQWRQHDDAPAKIALWRERLIAV 58 Query: 69 QKSLSQKGIVFQYHQ-----CSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLL 123 Q L + I + + S + + L + +++N +Y +NE +RD+ + Sbjct: 59 QHELREHNIPLKLIRFTNDNESTYSNMPAALLDLANRIDAHSIYFNNEYPLNEKQRDRHV 118 Query: 124 EKRL-QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAI 182 + +D V++ PG++ YKV+TPF + + + L + PA Sbjct: 119 SELFIYEGKQINRYDGDVVMRPGTVKTQQDATYKVFTPFSRQWHKLAGENQLVMVGKPAT 178 Query: 183 RLTGPVTPSN----IPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPA 238 + ++ D P++ ++P + L +F + Y E RDIP+ Sbjct: 179 QNASLLSLDEDVKTQWLVEDTPYR--QDLWPAKTEAIHQRLHQFAANRASNYKEMRDIPS 236 Query: 239 IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFY 298 + GTS LSPYL+ G +S RQC + +++ + W+ ELIWREFYRHL+ Y Sbjct: 237 VNGTSTLSPYLACGAISVRQCISAIRQNVEEWRSNQ------WITELIWREFYRHLIDSY 290 Query: 299 PSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITA 358 P + + FI + I WN D AW +G TG+PI+DAAM+QL GWMHNRLRM+TA Sbjct: 291 PHLSRSENFISLVKPIPWNNDEENFLAWCEGRTGYPIVDAAMKQLVQTGWMHNRLRMVTA 350 Query: 359 SFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRF 418 +FL K LLVDWR GE +FM LLDGD ASNNGGWQWAASTG D+ PYFRIF+P Q +RF Sbjct: 351 AFLTKLLLVDWRKGEAFFMQHLLDGDYASNNGGWQWAASTGADAAPYFRIFSPERQSERF 410 Query: 419 DPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477 D +G FI+ LPEL ++ + IH P+S K + Y P+VD+K A L +Y A Sbjct: 411 DKEGVFIKKLLPELCSLTKKTIHTPNSEQRK---TYGYIEPVVDYKWARQRALEEYATA 466 >gi|296116904|ref|ZP_06835507.1| deoxyribodipyrimidine photolyase [Gluconacetobacter hansenii ATCC 23769] gi|295976544|gb|EFG83319.1| deoxyribodipyrimidine photolyase [Gluconacetobacter hansenii ATCC 23769] Length = 513 Score = 404 bits (1037), Expect = e-110, Method: Composition-based stats. Identities = 160/487 (32%), Positives = 232/487 (47%), Gaps = 21/487 (4%) Query: 1 MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHF 60 M A + +VW RNDLR++DN AL A S V+ +F+ P+ R+H + A + Sbjct: 26 MPAD---APVIVWFRNDLRLSDNPALSHAVA-SGRPVLCLFVHDPQHAREHALGAAAQWW 81 Query: 61 IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120 + L + L++ G V D++ + Q ++ +NR+Y+ D Sbjct: 82 LDGGLRALHADLARMGAVLHV----ACGDALALVPRMAAQAGAAEVVWNRRYDPLGRETD 137 Query: 121 KLLEKRLQH-RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPV 179 ++ L+H VI SF VL P ++ A ++V+T + +A + P Sbjct: 138 TAIKATLKHAGVIAHSFAAGVLYEPWTVRTRAGDAFRVFTAWWRAARASGEPLPPLPAPG 197 Query: 180 PAIRLTGPVTPSNIPRFFD---------YPFQAIDPMFPIGEQNALHILRKFCKEKVYYY 230 P D + + GE A L F + Y Sbjct: 198 HVHAAVSPGAWEGCCVGIDALRLVPVSPDWAGGLREAWQPGEAQARDRLHHFVDGGLGGY 257 Query: 231 VEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKP--KSGAFSWLNELIWR 288 + RD P + TS+LSP L G +SPRQ W+ + +L+EL WR Sbjct: 258 ADARDRPDLPATSRLSPDLRFGHISPRQAWHAAVAAVRGGAAGGMGEQDLEKFLSELGWR 317 Query: 289 EFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGW 348 +F L+ P + + F + + W D+ L AW+QG TG+PI+DA MRQL GW Sbjct: 318 DFAVSLLYAQPEL-VSCNFRTEFDAMPWRNDARDLCAWQQGRTGYPIVDAGMRQLWRTGW 376 Query: 349 MHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRI 408 MHNR+RMI ASFL K LL DWR+GE +F L+D D+ASN WQW A G D+ PYFR+ Sbjct: 377 MHNRVRMIVASFLTKHLLCDWRMGEAWFRDTLVDADIASNVINWQWVAGCGVDAAPYFRV 436 Query: 409 FNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACH 468 FNP +Q +RFDP GT++R W+PEL VPT +HAP + + YP PIVD + Sbjct: 437 FNPVLQARRFDPDGTYVRRWVPELAGVPTSCVHAPWTCDPAIRARVAYPSPIVDLQGGRA 496 Query: 469 HTLNQYY 475 L + Sbjct: 497 RALAAWK 503 >gi|289580258|ref|YP_003478724.1| deoxyribodipyrimidine photo-lyase [Natrialba magadii ATCC 43099] gi|289529811|gb|ADD04162.1| Deoxyribodipyrimidine photo-lyase [Natrialba magadii ATCC 43099] Length = 468 Score = 404 bits (1037), Expect = e-110, Method: Composition-based stats. Identities = 164/477 (34%), Positives = 238/477 (49%), Gaps = 17/477 (3%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 MSVH+ W R DLR TDN +L AA VI FI P S + F+ SL Sbjct: 1 MSVHVHWHRRDLRATDNHSLSAAAETG--SVIPAFIFDPAVLE--FASPPRVAFMLESLS 56 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 +++ ++G E L + ++ +NR Y +RD+ + + Sbjct: 57 ELRAWYRERGGDLVVATGDPR----EELPRIAREHGAERVSWNRDYSGLASKRDEEVREA 112 Query: 127 L-QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185 L + S DD++L PGSI + Y VY+ F K ++ + + P Sbjct: 113 LTDAGIEATSVDDALLFEPGSITTQQGETYAVYSYFWKKWRDREKESPVSA---PDGEQL 169 Query: 186 GPVTPSNIPRFFDYPFQAIDPMFP-IGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244 V+ ++P F + P G + A L FC + +Y Y +QRD PA TS Sbjct: 170 ASVSGDSLPSQEALGFDDPEATIPDAGMEAARRRLETFCADPIYRYADQRDDPAADATSG 229 Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGA-FSWLNELIWREFYRHLMAFYPSVCM 303 LSP+L G + R + L + + + + + ++L WR FY H++ P Sbjct: 230 LSPHLKWGTIGIRTVYEALDRAKSEAPDEAAADSCEEFESQLAWRAFYAHVLDTNPHTVT 289 Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363 + + I+W D+ LQAWK G TG+PI+DA MRQL +MHNRLRMI ASFL K Sbjct: 290 AN-YRSYENPIQWQTDAAALQAWKDGKTGYPIVDAGMRQLRAEAFMHNRLRMIVASFLTK 348 Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423 DL++DWR G +F +L D D AS+ GGWQWA+ TG D+ PYFRIFNP QG+R DP Sbjct: 349 DLMLDWREGYAWFREKLADHDTASDVGGWQWASGTGTDAQPYFRIFNPMTQGERHDPDAE 408 Query: 424 FIRHWLPELNNVPTQYIHAPHSWL--DKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478 +IR ++PEL +VP + IH + ++ ++ YP PIVDH L+ + AA+ Sbjct: 409 YIRTYVPELADVPAETIHEWVALEPDERASVAPEYPDPIVDHAARREAALDMFEAAR 465 >gi|294341149|emb|CAZ89550.1| putative Deoxyribodipyrimidine photo-lyase PhrB [Thiomonas sp. 3As] Length = 497 Score = 403 bits (1036), Expect = e-110, Method: Composition-based stats. Identities = 166/497 (33%), Positives = 244/497 (49%), Gaps = 29/497 (5%) Query: 2 KATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIA-VF---IATPEQWRQHGISARQ 57 A + + LVWLR DLR+ DN AL+AA D +A VF I P ++ + R+ Sbjct: 12 SAVEKLPLGLVWLRRDLRLHDNAALHAALRACDKVALAFVFDRDILDP-LLQRGLQADRR 70 Query: 58 SHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEV 117 FI A++ ++ +L + G S E + + + +F R E + Sbjct: 71 VEFILAAVAEIDAALREHGAALIVRHASAR----EAIPALAAELGAQTVFCGRDDEPEAL 126 Query: 118 RRDKLLEKRLQHRV-ICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRS 176 RD +E+ L+ ++ + ++ +L + Y V+TP+R A + + Sbjct: 127 ARDAAVERALRQDGRALRTVKEHMIFERDEVLTAQGKPYSVFTPYRTAWLARYAAQPQQP 186 Query: 177 L----PVPAIRLTGPVTPSNIPRFFDYPFQAIDPM---FPIGEQNALHILRKFCKEKVYY 229 + + +P + F + P+G A ++ F ++ Sbjct: 187 VDSAVTSARLAALPAALRQPLPTLSELGFAPSNLHALKLPLGASGAAALVDDF-SRRIDD 245 Query: 230 YVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWRE 289 Y + RD PA +G S LS +L G +S R+ GA WL+EL+WR+ Sbjct: 246 YDQARDYPARKGPSYLSVHLRFGTVSVRELVAMAWARQQA----GSEGARVWLSELVWRD 301 Query: 290 FYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWM 349 FY ++ +P V + F P ++I+W D AW +G TG+P++DAAMRQ+N G+M Sbjct: 302 FYFQILFHHPHV-VNAAFKPVYDRIQWRNDPAQFAAWCEGRTGYPLVDAAMRQINQTGYM 360 Query: 350 HNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIF 409 HNRLRM+ ASFL KDL +DWR GE YF L D DLA+NNGGWQWAAS+G D+ PYFRIF Sbjct: 361 HNRLRMVVASFLTKDLGIDWRWGERYFADHLNDFDLAANNGGWQWAASSGCDAQPYFRIF 420 Query: 410 NPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDK------NDLSLNYPLPIVDH 463 NP Q ++FD G FIR ++PEL ++ IHAP L YP+PIV H Sbjct: 421 NPVAQSEKFDAGGDFIRRYVPELAQFASKDIHAPWKAPAALLQAAGVRLGSTYPVPIVRH 480 Query: 464 KKACHHTLNQYYAAKKQ 480 A TL +Y K Q Sbjct: 481 DLARAETLERYAVVKAQ 497 >gi|73540409|ref|YP_294929.1| deoxyribodipyrimidine photo-lyase type I [Ralstonia eutropha JMP134] gi|72117822|gb|AAZ60085.1| Deoxyribodipyrimidine photo-lyase type I [Ralstonia eutropha JMP134] Length = 525 Score = 403 bits (1036), Expect = e-110, Method: Composition-based stats. Identities = 172/491 (35%), Positives = 247/491 (50%), Gaps = 28/491 (5%) Query: 10 HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGI----SARQSHFIYASL 65 LVW R DLR TD+ AL+ A + +V VF+ + R+ FI ASL Sbjct: 36 GLVWFRRDLRSTDHAALHYALKHC-REVWCVFVFDRDILDPLLARGLKGDRRVDFIRASL 94 Query: 66 LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125 +++ +L G D + + + + V +F N YE + V RD + Sbjct: 95 IELDATLRAAGGGLIVMN----DSAASAIPALARELGVQAVFANHDYEPDAVARDAAVRD 150 Query: 126 RLQ-HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL 184 L + +F D V+ IL + + V+TP++ A ++ + DLR P+ Sbjct: 151 SLAGDARVLFTFKDQVIFERDEILTSQGKPFAVFTPYKNAWLKTIQPFDLRPYPIEPYLH 210 Query: 185 TGPVTPSN----IPRFFDYPFQAIDPM---FPIGEQNALHILRKFCKEKVYYYVEQRDIP 237 PS +P D F + P G + +F ++ Y +RD P Sbjct: 211 ALAPLPSKRLVPLPSLEDLGFAPSNLAEVAMPTGSSGGQALFEEFTS-RMGDYGRRRDYP 269 Query: 238 AIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAF 297 A++G S LS +L G +S R + +GA +WL+EL+WR+FY ++ Sbjct: 270 ALRGPSYLSVHLRFGTVSIRTLARAAHGAVL-RGGADSAGAATWLSELVWRDFYFMILHH 328 Query: 298 YPSVCMGKPFIPWTEKIEWNKDS---HLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLR 354 +P V G+ F P + I W ++W+ TG+P++DAAM Q+ G+MHNRLR Sbjct: 329 HPRVAAGEAFHPAYDIIRWRDGETGDRYFESWRDAATGYPLVDAAMLQIRQSGYMHNRLR 388 Query: 355 MITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQ 414 M+TASFLVKDL VDWR GE YF QL D D A+NNGGWQWAASTG D+ P+FRIFNP Q Sbjct: 389 MVTASFLVKDLGVDWRRGEHYFADQLNDFDFAANNGGWQWAASTGCDAQPWFRIFNPVTQ 448 Query: 415 GKRFDPQGTFIRHWLPELNNVPTQYIHAPHS------WLDKNDLSLNYPLPIVDHKKACH 468 ++FDPQG FIR +LP+L +P +Y+HAP + L NYP P+V H A Sbjct: 449 SEKFDPQGRFIRKYLPQLAALPDKYVHAPWTAPQDVLLAAGVRLGENYPRPLVQHDVARK 508 Query: 469 HTLNQYYAAKK 479 TL +Y K+ Sbjct: 509 ETLERYAVVKE 519 >gi|148271713|ref|YP_001221274.1| deoxyribodipyrimidine photo-lyase [Clavibacter michiganensis subsp. michiganensis NCPPB 382] gi|147829643|emb|CAN00559.1| Deoxyribodipyrimidine photo-lyase [Clavibacter michiganensis subsp. michiganensis NCPPB 382] Length = 508 Score = 403 bits (1035), Expect = e-110, Method: Composition-based stats. Identities = 160/501 (31%), Positives = 250/501 (49%), Gaps = 32/501 (6%) Query: 3 ATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIY 62 A A +VWLR+DLR+ DN AL+AA + ++ +++ E + +++ Sbjct: 17 AEEAHGPSIVWLRDDLRVADNPALHAAVERGE-PIVVLYVLDEESDGIRPLGGAARWWLH 75 Query: 63 ASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKL 122 SL ++ +SL + G + + + +D + + +NR+Y E+ D Sbjct: 76 MSLSRLAESLRELGSDLVLRRGK----AADVVDDLVREIGAGAVLWNRRYGGAEIAVDTA 131 Query: 123 LEKRLQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPA 181 ++K L R + +SF S+L+ P ++ N + ++VYTPF KA + + + LP P Sbjct: 132 IKKDLGDRGLDVRSFQGSLLVEPWTVTNKQGEPFRVYTPFWKAAQER--EEPRKPLPAPK 189 Query: 182 IRLTGPVTPSNIPRFFDYPFQAIDPMFP--------IGEQNALHILRKFCKEKVYYYVEQ 233 L P + P + GE L L F ++ Y Q Sbjct: 190 -ELDAPREAPRSDDLDGWGLLPTKPDWAAGLRESCDPGEAAGLQRLEDFVHHELEDYAAQ 248 Query: 234 RDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRH 293 RD PA TS+LS YL G +SP Q W+R++ + + A +L+EL WREF H Sbjct: 249 RDEPAAMTTSRLSAYLRWGEVSPFQVWHRIQRTRGKKVGGDEVNATKFLSELGWREFSYH 308 Query: 294 LMAFYPSVCMGKPFIPWTEKIEWNKD-SHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNR 352 L+ P + + F+P + W++ L AW++G TG P++DA MR L G +HNR Sbjct: 309 LLYHQPDLAT-RNFVPRFDAFPWDEPTDETLGAWQRGETGVPLVDAGMRALWKDGHLHNR 367 Query: 353 LRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPT 412 +RM+ ASFL+K+LL+DWR GE++F L+D D A+N WQW A +G D+ PYFR+FNP Sbjct: 368 VRMVVASFLIKNLLIDWRHGEQWFWDTLVDADAANNAASWQWVAGSGADAAPYFRVFNPV 427 Query: 413 IQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLN-------------YPLP 459 +QG++FDP G +IR ++PEL + P +H P + S YP P Sbjct: 428 LQGQKFDPSGEYIRSYVPELAHAPRDVVHEPWKAMGDLVASAEDGADDSDDGGLAAYPAP 487 Query: 460 IVDHKKACHHTLNQYYAAKKQ 480 IVD K++ L Y K + Sbjct: 488 IVDLKESRQRALAAYDEIKDR 508 >gi|325110039|ref|YP_004271107.1| deoxyribodipyrimidine photo-lyase type I [Planctomyces brasiliensis DSM 5305] gi|324970307|gb|ADY61085.1| deoxyribodipyrimidine photo-lyase type I [Planctomyces brasiliensis DSM 5305] Length = 502 Score = 403 bits (1035), Expect = e-110, Method: Composition-based stats. Identities = 164/492 (33%), Positives = 243/492 (49%), Gaps = 21/492 (4%) Query: 1 MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHF 60 + A + LVWLR DLR+ DN ALYAA N+ VI V++ P + S + Sbjct: 18 LPADLSEGPVLVWLRQDLRLRDNPALYAAA-NTGRSVIVVYLL-PNRNDDWFPGGAASWW 75 Query: 61 IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120 ++ SL + +L ++ S + + + +F+NR YE + RD Sbjct: 76 LHHSLDALTTNLHKRHHQLILRSGS----AATEMTRLAEDCKAAAVFWNRCYEPADRERD 131 Query: 121 KLLEKRLQHRV-ICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPV 179 + +L +SF S+L+ P ++ Y+V+TPF KA + A P Sbjct: 132 EKTADKLAQAGYQVRSFPGSLLIEPWTLSTKQGDPYQVFTPFWKAARSRVEFASPLPAPE 191 Query: 180 PAIRLTGPVTPSNIPRFFDYPF----QAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRD 235 + + P + GE A +KF + + Y +RD Sbjct: 192 SLKTPDQWPDSEELADWKLLPTLDWADEFPERWKPGEDAAHAAWQKFLDDNIAEYGTERD 251 Query: 236 IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKS---GAFSWLNELIWREFYR 292 +P+ GTS+LSP+L G +SPRQ + E+ +S +L+E+ WREF Sbjct: 252 VPSHHGTSRLSPHLHYGEISPRQIYAEAVEKMNRKQTATESFEKNVNVYLSEIGWREFGY 311 Query: 293 HLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNR 352 H++ +P P W L+AW+QG TG+PI+DA MR+L GWMHNR Sbjct: 312 HVLYHFPHTPE-NPLREKFADFNWETKKSWLKAWQQGQTGYPIVDAGMRELWRTGWMHNR 370 Query: 353 LRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPT 412 +RMI ASFL KDL + W G ++F L+D DLA+N GWQWA+ G D+ PYFR+FNPT Sbjct: 371 VRMIVASFLTKDLRIHWLEGSKWFWDTLVDADLANNTLGWQWASGCGADAAPYFRVFNPT 430 Query: 413 IQGKRFDPQGTFIRHWLPELNNVPTQYIH----APHSWLDKND--LSLNYPLPIVDHKKA 466 Q ++FDP+G ++R W PEL ++P +Y+H AP S L+K L +YP PIVDH + Sbjct: 431 RQSEKFDPKGNYLRRWCPELADLPDKYLHCPADAPESVLNKAGVRLGKDYPEPIVDHAEQ 490 Query: 467 CHHTLNQYYAAK 478 L ++ K Sbjct: 491 RDAALAEWEKVK 502 >gi|83594235|ref|YP_427987.1| deoxyribodipyrimidine photo-lyase type I [Rhodospirillum rubrum ATCC 11170] gi|83577149|gb|ABC23700.1| Deoxyribodipyrimidine photo-lyase type I [Rhodospirillum rubrum ATCC 11170] Length = 478 Score = 403 bits (1035), Expect = e-110, Method: Composition-based stats. Identities = 161/492 (32%), Positives = 233/492 (47%), Gaps = 33/492 (6%) Query: 7 MSV-HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQH-GISARQSHFIYAS 64 M++ LVW R+DLR+ DN AL AA +S A VI ++ H + ++ S Sbjct: 1 MTIPVLVWFRDDLRLADNPALCAAL-DSGAPVIPFYLLDDSTSDGHRPLGGATRWWLGRS 59 Query: 65 LLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLE 124 L + +S++Q+G + +++ + + LF NR Y ++ +R D L Sbjct: 60 LTSLAESIAQRGGRLVLRRG----EALSAVPELAAETDAAALFANRLYGMDSLRDDDLFM 115 Query: 125 KRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL 184 + + FD +L P ++ + ++V+TPF K L L + P + Sbjct: 116 VLRVAGLTVRLFDSGLLHRPEAVTTKTGRPFRVFTPFWKTLSATLDPGLPLAAPDSFPPV 175 Query: 185 TGPVTPSNIPRFFDYPFQAIDP--------MFPIGEQNALHILRKFCKEKVYYYVEQRDI 236 P P D+ + P + GE A L F V Y RD Sbjct: 176 DDP--PPASDSLADWSLEPTTPDWAGGLRDTWQPGEAGAQARLEAFFNGPVADYASGRDR 233 Query: 237 PAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMA 296 P TS+LSP+L G +SPRQ W + P G ++L EL WREF HL+ Sbjct: 234 PDKPLTSKLSPHLRFGEISPRQVWTAARHH------PPGGGMDAFLRELGWREFCHHLLF 287 Query: 297 FYPSVCMGKPFIPWTEKIEWNKDSH---LLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRL 353 P++ +P W + L AW+ G TG+PI+DA MR+L GWMHNR+ Sbjct: 288 QAPTMAE-EPLKAEFLAFPWTEAKEIGPALAAWQSGETGYPIVDAGMRELWHTGWMHNRV 346 Query: 354 RMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTI 413 RMI ASFL+KDLL+ W+ GE +F L+D A+N GWQW A G D+ P+FRIFNP Sbjct: 347 RMIAASFLIKDLLIPWQHGERWFWDTLVDACPANNAAGWQWVAGCGADAAPFFRIFNPVT 406 Query: 414 QGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSW------LDKNDLSLNYPLPIVDHKKAC 467 QG+RFDP+G ++R WLPEL ++P+ IH P L YP P++DH A Sbjct: 407 QGERFDPEGAYVRRWLPELADLPSSLIHRPWEAPPLILRQAGVTLGKTYPPPLIDHAHAR 466 Query: 468 HHTLNQYYAAKK 479 L + Sbjct: 467 VRALEALAVVNR 478 >gi|29467475|dbj|BAC67176.1| cryptochrome 2 [Armoracia rusticana] Length = 617 Score = 403 bits (1035), Expect = e-110, Method: Composition-based stats. Identities = 138/500 (27%), Positives = 227/500 (45%), Gaps = 29/500 (5%) Query: 7 MSVH---LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYA 63 M+ + +VW R DLRI DN AL AA H V VFI PE+ Q ++ Sbjct: 1 MTTNKKTIVWFRRDLRIEDNPALAAAAHEG--SVFPVFIWCPEEEGQFYPGRASRWWMKQ 58 Query: 64 SLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLL 123 SL + +SL G + N ++ + TK+ +N Y+ + RD + Sbjct: 59 SLAHLSQSLKALGSELTLIKTHN---TVSAILDCIRITGATKVVFNHLYDPVSLVRDHTV 115 Query: 124 EKRLQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAI 182 +++L I +SF+ +L P I + + ++ + K + +++ + P + Sbjct: 116 KEKLVELGISVQSFNGDLLYEPWEIYFEKGKPFTNFSSYWKKCLDMSIESVMLPPPWRLM 175 Query: 183 RLTGPVTPSNIPRFFDYPFQA---------IDPMFPIGEQNALHILRKFCKEKVYYYVEQ 233 ++ + + + + G NA IL +F ++++ Y + Sbjct: 176 PISTAAEAVWACSIEELGLENETEKPSNALLTRAWSPGWSNADKILNEFIEKQLIDYAKN 235 Query: 234 RDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEF----VDLLIKPKSGAFSWLNELIWRE 289 TS LSPYL G +S R+ + + + D + A +L + RE Sbjct: 236 SKKVVGNSTSLLSPYLHYGEISIRRIFQCARMKQIIWARDKNSEGDESADLFLKGIGLRE 295 Query: 290 FYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWM 349 + R++ +P + + W+ D +AW+QG TG+P++DA MR+L GWM Sbjct: 296 YSRYICFNFP-FTHEQSLLSHLRFFPWDTDVDKFKAWRQGRTGYPLVDAGMRELWATGWM 354 Query: 350 HNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIF 409 HNRLR+I +SF VK LL+ W+ G +YF LLD DL + GWQ+ + + D R+ Sbjct: 355 HNRLRVIVSSFAVKFLLLPWKWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELDRLD 414 Query: 410 NPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSW------LDKNDLSLNYPLPIVDH 463 NP IQG ++DP+G +IR WLPEL +PT++IH P +L NY PIVD Sbjct: 415 NPAIQGAKYDPEGEYIRQWLPELARLPTEWIHHPWDAPLTVLKASGVELGTNYAKPIVDI 474 Query: 464 KKACHHTLNQYYAAKKQSLL 483 A ++ ++ Sbjct: 475 DTARELLTKAISRTREAQIM 494 >gi|194334030|ref|YP_002015890.1| Deoxyribodipyrimidine photo-lyase [Prosthecochloris aestuarii DSM 271] gi|194311848|gb|ACF46243.1| Deoxyribodipyrimidine photo-lyase [Prosthecochloris aestuarii DSM 271] Length = 477 Score = 402 bits (1034), Expect = e-110, Method: Composition-based stats. Identities = 152/487 (31%), Positives = 243/487 (49%), Gaps = 28/487 (5%) Query: 8 SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67 + W R DLR+ DN AL+ A V+ V+I + + +++ SL+ Sbjct: 4 KTVICWFRQDLRLEDNPALFVAAEEG--YVLPVYILDDSSPGTWQMGSATRCWLHHSLVS 61 Query: 68 VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127 + +S K +F+ + +E L + Q + K+ +NR YE ++RD+ ++ L Sbjct: 62 LNRSFDGKLGIFR-------GEPLEILKTLARQHKAEKIVWNRCYEPWRMKRDQGIKATL 114 Query: 128 Q-HRVICKSFDDSVLLPPGSILNHALQMYKVYTPF-RKALIQNLVQADLRSLP---VPAI 182 Q + SF+ S+L P +L Y+V+TPF R+ + L P + A Sbjct: 115 QAEGIEVSSFNGSLLWEPHEVLKQNNTPYRVFTPFFRRGCLNALPPRTPLPAPQRMLMAD 174 Query: 183 RLTGPVTPSNIPRFFDYPFQA-IDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQG 241 + ++ ++ P+ + + + +GE +A L +F + + Y E RD P Sbjct: 175 TIDNSISVQDLNLLPSIPWDSQLISHWSVGENSARQSLLRFLDQGLNGYKEGRDFPGQNH 234 Query: 242 TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSV 301 S+LSP L G LSP W + +L+EL WREF L+ + Sbjct: 235 VSRLSPALHFGELSPNTVW------YEAKRCGSGQDLDHFLSELGWREFAYTLLYHNHDM 288 Query: 302 CMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFL 361 K + W + L W+QG TG+P++DA MR+L G+MHNR+RMIT SFL Sbjct: 289 PE-KNLQSAFDAFPWVHNDETLIRWQQGMTGYPLVDAGMRELWQTGYMHNRVRMITGSFL 347 Query: 362 VKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQ 421 VK+LL+ W G+++F LLD DLA+N+ GWQW A G D+ PYFR+FNP QG++FDP Sbjct: 348 VKNLLLHWHYGQQWFHDCLLDADLANNSAGWQWIAGCGVDAAPYFRVFNPVRQGEKFDPD 407 Query: 422 GTFIRHWLPELNNVPTQYIHAPHS----WLDKNDLSLN--YPLPIVDHKKACHHTLNQYY 475 GT+ ++PEL +P +Y+ P L + ++L YP PIVD + + L+ Y Sbjct: 408 GTYTLRFVPELAKLPKKYLFNPWEAPKNILQEAGITLGKTYPEPIVDLAISRNRALSAYA 467 Query: 476 AAKKQSL 482 + +K+ + Sbjct: 468 SIRKKKI 474 >gi|302877366|ref|YP_003845930.1| Deoxyribodipyrimidine photo-lyase [Gallionella capsiferriformans ES-2] gi|302580155|gb|ADL54166.1| Deoxyribodipyrimidine photo-lyase [Gallionella capsiferriformans ES-2] Length = 473 Score = 402 bits (1034), Expect = e-110, Method: Composition-based stats. Identities = 173/479 (36%), Positives = 239/479 (49%), Gaps = 25/479 (5%) Query: 10 HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQ-HGISARQSHFIYASLLQV 68 + W R DLR+ D+ ALY A NS A V VF+ R+ FI+ SL ++ Sbjct: 7 SICWFRRDLRLDDHAALYHALKNSRA-VHCVFVFDTVILDALSDKHDRRVEFIWHSLYEL 65 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128 L Q G Q + +E + + V +F NR YE VRRD + L Sbjct: 66 NALLQQHGSTLQILHG----NPVELIPHLARELEVQAVFCNRDYEPLAVRRDAAVAASLS 121 Query: 129 HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVP----AIRL 184 + + D V+ IL Y V+TP++ A ++ L LR+ PV ++ Sbjct: 122 D-IDFHQYKDQVIFEQSEILTGGGTPYSVFTPYKNAWLKKLDDFYLRAYPVERYFSSLAK 180 Query: 185 TGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244 + P + P + P G A + F ++ Y E R+ PA++G S Sbjct: 181 SAPQAFPALALLGFLPGKLNVQALPTGASGAATLFENFVS-RIDAYGEARNFPAVKGVSY 239 Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304 LS +L G +S R+ + +G WL+ELIWR+FY+ + +P + G Sbjct: 240 LSVHLRFGTISIRRVASF-------AYYSGGAGGQVWLSELIWRDFYQMQLHHHPQLGQG 292 Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364 F I + + AW + TG+P+IDAAMRQLN G+MHNRLRM+ ASFLVKD Sbjct: 293 AAFKAQFNDIRFPNEEGKFAAWCEARTGYPLIDAAMRQLNGSGYMHNRLRMVVASFLVKD 352 Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424 L +DWR GE YF L+D DLA+NNGGWQWAASTG D+ P+FRIFNP Q ++FD G F Sbjct: 353 LHIDWRWGERYFAQHLIDFDLAANNGGWQWAASTGCDAQPWFRIFNPVTQSEKFDGAGRF 412 Query: 425 IRHWLPELNNVPTQYIHAPHSWLDKND------LSLNYPLPIVDHKKACHHTLNQYYAA 477 IR ++PEL P ++IHAP + YPLP+VDH A TL + AA Sbjct: 413 IRRYVPELAGCPDKWIHAPWLMPAAEQQRCGVLVGKTYPLPVVDHAVARITTLALFKAA 471 >gi|261876465|dbj|BAI47558.1| cryptochrome2 [Glycine max] Length = 634 Score = 402 bits (1034), Expect = e-110, Method: Composition-based stats. Identities = 139/482 (28%), Positives = 227/482 (47%), Gaps = 23/482 (4%) Query: 10 HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69 +VW R DLRI DN AL AA V+ V+I P++ Q ++ SL + Sbjct: 6 TIVWFRRDLRIEDNPALAAAAKEG--SVLPVYIWCPKEEGQFYPGRVSRWWLKQSLAHLD 63 Query: 70 KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL-Q 128 +SL G + + ++ L + TK+ +N Y+ + RD ++++L + Sbjct: 64 QSLKSLGSRLVLIKTHS---TVTALVECVKAIQATKVVFNHLYDPVSLVRDHNIKEKLVE 120 Query: 129 HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188 + +S++ +L P + + + + + + F K + + P I G V Sbjct: 121 QGISVQSYNGDLLYEPWEVYSESGRAFTTFNAFWKKCLHMQMDIVSVVPPWQLIPAEGKV 180 Query: 189 TPSNIPRF-----FDYPFQAI-DPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGT 242 + + P A+ + G +NA L +F ++ + Y ++R T Sbjct: 181 EECPLEELGLENESEKPSNALLGRAWSPGWRNADKALTEFVEQHLLDYSKKRLKVGGDST 240 Query: 243 SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFS----WLNELIWREFYRHLMAFY 298 S LSPYL G LS R+ + + + + + S +L + RE+ R+L + Sbjct: 241 SLLSPYLHFGELSVRKVFQVTRMKQILWTNEGNSAGEESVNLFLRAIGLREYSRYLCFNF 300 Query: 299 PSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITA 358 P K + + WN D+ + + W+QG TGFP++DA MR+L GW+HNR+R+I + Sbjct: 301 P-FTHEKALLGHLKFFPWNPDADIFKNWRQGRTGFPLVDAGMRELWATGWIHNRIRVIVS 359 Query: 359 SFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRF 418 SF VK LL+ W+ G +YF LLD DL S+ GWQ+ + D R+ NP IQG +F Sbjct: 360 SFAVKMLLLPWKWGMKYFWDTLLDADLESDILGWQYISGGLPDGHEPERLDNPEIQGVKF 419 Query: 419 DPQGTFIRHWLPELNNVPTQYIHAPHSW------LDKNDLSLNYPLPIVDHKKACHHTLN 472 DP+G ++R WLPEL +PT++IH P +L NYP PI+D A + Sbjct: 420 DPEGEYVRQWLPELARMPTEWIHHPWDAPLTVLRAAGVELGQNYPKPIIDIDLARERLIE 479 Query: 473 QY 474 Sbjct: 480 AI 481 >gi|115525443|ref|YP_782354.1| deoxyribodipyrimidine photolyase [Rhodopseudomonas palustris BisA53] gi|115519390|gb|ABJ07374.1| Deoxyribodipyrimidine photo-lyase type I [Rhodopseudomonas palustris BisA53] Length = 483 Score = 402 bits (1034), Expect = e-110, Method: Composition-based stats. Identities = 154/492 (31%), Positives = 234/492 (47%), Gaps = 26/492 (5%) Query: 3 ATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIY 62 A + LVW R+DLR++D+ AL AA +S V+ +++ + + ++ Sbjct: 2 AISPPRPSLVWFRDDLRLSDHPALNAAA-SSGRPVLCLYVLDEQSPGGRPLGGAARWWLA 60 Query: 63 ASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKL 122 SL +Q+ LS++G + + + + + + ++YN Sbjct: 61 QSLRSLQQILSERGATLMLRRGA----AAQVVAGLARETNAEVVYYNDIAMAPARTVAAE 116 Query: 123 LEKRLQ-HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPA 181 L L H + +L P +I + +V+TPF K ++ + P+PA Sbjct: 117 LAATLADHGIAVHQHPGDLLAAPETIRTKEGRGLRVFTPFWKRVLSLGDP----AKPLPA 172 Query: 182 IRLTGPVTPSNIPRFFDYPFQAIDP--------MFPIGEQNALHILRKFCKEKVYYYVEQ 233 GP + R D+ + P + GE A L F + Y Sbjct: 173 PTALGPPPAAASDRLDDWALEPTAPDWAGGLRAAWQPGEAAAQRALTDFLTTGIAGYAGD 232 Query: 234 RDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRH 293 RD P GTS LSP+L G + PRQ W+ + +L+EL WREF RH Sbjct: 233 RDRPDRPGTSLLSPHLRFGEIGPRQIWHAARFAAA-ARPAIAGDVDKFLSELGWREFCRH 291 Query: 294 LMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRL 353 L+ + + + P + W +D L+AW++G TG+PI+DA MRQL G MHNR+ Sbjct: 292 LLFDHSDLAT-RNLQPAFDAFPWVEDPAGLRAWQRGLTGYPIVDAGMRQLWQTGVMHNRV 350 Query: 354 RMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTI 413 RM+ ASFLVK LL+DWR GE++F L+D D SN G WQW A G D+ PYFR+FNP + Sbjct: 351 RMVVASFLVKHLLIDWRCGEQWFWDTLVDADAGSNPGNWQWVAGCGADAAPYFRVFNPIL 410 Query: 414 QGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWL------DKNDLSLNYPLPIVDHKKAC 467 QG++FDP G ++R ++PEL +P IH P + L NYP PI++H++ Sbjct: 411 QGEKFDPDGAYVRRFVPELARLPAALIHQPWTATPLELASAGVQLGHNYPEPIIEHRRGR 470 Query: 468 HHTLNQYYAAKK 479 L Y +K Sbjct: 471 ERALAAYATVRK 482 >gi|86607703|ref|YP_476465.1| deoxyribodipyrimidine photolyase [Synechococcus sp. JA-2-3B'a(2-13)] gi|86556245|gb|ABD01202.1| deoxyribodipyrimidine photolyase [Synechococcus sp. JA-2-3B'a(2-13)] Length = 487 Score = 402 bits (1034), Expect = e-110, Method: Composition-based stats. Identities = 177/481 (36%), Positives = 258/481 (53%), Gaps = 17/481 (3%) Query: 8 SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67 S L+W R DLR+ DN AL+ A S ++V+ VFI P+ R+ ++ + F+ +L + Sbjct: 3 SPVLLWHRRDLRLGDNTALHEAAQRS-SQVVPVFIFDPQMLRRSDMAPARVAFLLQALQE 61 Query: 68 VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127 +Q+ +Q GI + + L + +F+N E ++++ ++ L Sbjct: 62 LQERYAQMGIPLIWRLGDPSVE----LRCLAIDLGARAVFWNADGEPFALQQESRVQASL 117 Query: 128 QHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 I S+ D +L PG +L A + Y V+TPF + +L + D +P ++G Sbjct: 118 AAAGIQSFSYQDMLLHGPGEVLTQAGEPYSVFTPFWRRW-ASLPKPDPYPIPKGLQPVSG 176 Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKE-KVYYYVEQRDIPAIQGTSQL 245 + +P D F + GE A +L FC+ ++ Y R+ PA GTS L Sbjct: 177 -LKAQPLPTLADLGFVCDQRIPAAGEAAAQALLEDFCQGLRILDYERARNFPAEPGTSLL 235 Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIK-PKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304 SP+L G + RQ W +E ++ + +S +W EL WREFY+H++A +P V G Sbjct: 236 SPHLCWGTIGIRQVWQATREVEAEVRSQEAESSLQTWRQELCWREFYKHVLAHWPHVETG 295 Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364 + + +EW+ QAW G TG+PI+DAAMRQLN GWMHNR RMI ASFL KD Sbjct: 296 -AYRRAFDALEWDNRQDWFQAWCTGQTGYPIVDAAMRQLNETGWMHNRCRMIVASFLTKD 354 Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424 LL+DWR GE YFM +L+DGDLA+NNGGWQW+AS G D P RIFNP Q R+DP+G + Sbjct: 355 LLIDWRWGERYFMQKLVDGDLAANNGGWQWSASVGTDPKP-LRIFNPATQAARYDPEGEY 413 Query: 425 IRHWLPELNNVPTQYI----HAPH-SWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479 IR +LPEL + T + P +W + S YP PIVDHK +Y A ++ Sbjct: 414 IRRYLPELARLDTPALLWVGDDPKGAWALRERRSCGYPDPIVDHKVQQQAFKRRYQAVQQ 473 Query: 480 Q 480 Sbjct: 474 A 474 >gi|195995781|ref|XP_002107759.1| hypothetical protein TRIADDRAFT_18352 [Trichoplax adhaerens] gi|190588535|gb|EDV28557.1| hypothetical protein TRIADDRAFT_18352 [Trichoplax adhaerens] Length = 503 Score = 402 bits (1033), Expect = e-110, Method: Composition-based stats. Identities = 159/493 (32%), Positives = 237/493 (48%), Gaps = 21/493 (4%) Query: 3 ATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIY 62 +++ + LVWLR DLR+ DN AL+ A +I V+I + + ++Y Sbjct: 2 SSSKIPCTLVWLRQDLRLIDNPALFHAAKRGQ--LITVYIFDEDCSGKRRTGQACLWWLY 59 Query: 63 ASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKL 122 SL ++ LSQ I D+ L +++NR YE E RD Sbjct: 60 HSLKSLRNQLSQWNIPLIVKSG---KDAFTILKELLDSYNADAIYWNRCYEPFEYNRDCS 116 Query: 123 LEKRLQ-HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPA 181 +E++L+ V +++ D VL P +I ++Y F + P Sbjct: 117 IEEKLKMENVTVETYQDRVLFEPWTIKTAKGGPVQIYVHFWNQCLSLPQPRKPYDKPKFK 176 Query: 182 IR---LTGPVTPSNIPRFFDYPFQ---AIDPMFPIGEQNALHILRKFCKEKVYYYVEQRD 235 + + P+ R + + GE+ A+ L+ F K + Y E+ Sbjct: 177 NQTGCQSKCDEPAVWQRLAKLSQDMPMKLQDFWHPGEEQAISKLKSFIKNSLNAYAEKSQ 236 Query: 236 IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKP--KSGAFSWLNELIWREFYRH 293 + TS LSPYL G +SP W+ ++ +L L WRE+ H Sbjct: 237 CLRLNTTSNLSPYLHFGEISPFTVWHSVRHASSSAEPPAVKSESLKQYLRSLGWREYTCH 296 Query: 294 LMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRL 353 L+ YP + K F E+++ D LQ+W+QG TG+P++DA MRQL+ G M NRL Sbjct: 297 LLFHYPDLP-QKCFRSSFEQLKLQVDPVKLQSWQQGNTGYPVVDAGMRQLSVAGIMPNRL 355 Query: 354 RMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTI 413 RMI ASFL+K LLV W+ GEE+F S+L+D DLA N WQWAA +G ++ PYFR+FNP Sbjct: 356 RMIVASFLIKHLLVPWQKGEEWFWSKLIDADLAQNAFNWQWAAGSGPNACPYFRVFNPIT 415 Query: 414 QGKRFDPQGTFIRHWLPELNNVPTQYIHAPH----SWLDKNDL--SLNYPLPIVDHKKAC 467 QG++FD G ++R W+PEL +P YIH P + L K ++ YP PIV HK A Sbjct: 416 QGEKFDADGYYVRKWIPELAALPNAYIHKPWEAPSTVLKKANIVLGKTYPRPIVQHKAAR 475 Query: 468 HHTLNQYYAAKKQ 480 L + K++ Sbjct: 476 ELALATFGQTKRK 488 >gi|17230217|ref|NP_486765.1| deoxyribopyrimidine photolyase [Nostoc sp. PCC 7120] gi|17131818|dbj|BAB74424.1| deoxyribopyrimidine photolyase [Nostoc sp. PCC 7120] Length = 479 Score = 402 bits (1033), Expect = e-110, Method: Composition-based stats. Identities = 168/482 (34%), Positives = 238/482 (49%), Gaps = 18/482 (3%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 L W R DLRI DN L AA S +KV+ VF P + ++ + ++ SL ++Q+ Sbjct: 6 LFWHRRDLRIADNIGLAAARQQS-SKVVGVFCLDPNILERDDVAPARVTYMIGSLQELQQ 64 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130 Q G D ++ + +F+N E RD+ + L+ + Sbjct: 65 RYVQAGSQLLILHG----DPVQAIPHLAEALNAKAVFWNWDVEPYSQTRDRAILDILKDK 120 Query: 131 VI--CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPV------PAI 182 I D +L P I + + Y VYTPF K + +L Sbjct: 121 GIQFLTHKWDQILHSPDEIRSGSNTPYTVYTPFWKNWSSKPKAKPVETLQNAEGLTESEQ 180 Query: 183 RLTGPVTPSNIPRFFDYPF-QAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQG 241 L +P D F D + GE A L +F + + Y EQR+ PA+ G Sbjct: 181 ELAQKAGVKTLPTAKDLGFFWDADLIIAPGEAAAQAKLEEFTAKAITEYQEQRNFPAVDG 240 Query: 242 TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGA-FSWLNELIWREFYRHLMAFYPS 300 TSQLS L GV+ R W E + + S A +W EL WREFY+H M +P Sbjct: 241 TSQLSAALKFGVIGIRTVWQATLEALENSRSEEASAAIRTWQQELAWREFYQHAMYNFPE 300 Query: 301 VCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASF 360 + G + + W + QAW++G TG+PI+DAAMRQ+N GWMHNR RMI ASF Sbjct: 301 LADG-AYRETFKNFPWETNEEHFQAWREGKTGYPIVDAAMRQMNESGWMHNRCRMIVASF 359 Query: 361 LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDP 420 L KDLL++ ++GE+YFM +L+DGDL++NNGGWQW+AS+G D P RIFNP Q ++FDP Sbjct: 360 LTKDLLINPQLGEKYFMQKLIDGDLSANNGGWQWSASSGMDPKP-LRIFNPASQSQKFDP 418 Query: 421 QGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQ 480 +IR W+PEL ++ T+Y+ ++ Y PIVDH+K +Y K Sbjct: 419 DAEYIRRWVPELRSMDTEYLVT-GKITPLERHAVGYVKPIVDHQKQQQLFKQRYQQQKAT 477 Query: 481 SL 482 SL Sbjct: 478 SL 479 >gi|15219720|ref|NP_171935.1| CRY2 (CRYPTOCHROME 2); blue light photoreceptor/ protein homodimerization [Arabidopsis thaliana] gi|30678870|ref|NP_849588.1| CRY2 (CRYPTOCHROME 2); blue light photoreceptor/ protein homodimerization [Arabidopsis thaliana] gi|3913379|sp|Q96524|CRY2_ARATH RecName: Full=Cryptochrome-2; AltName: Full=Blue light photoreceptor gi|1857038|gb|AAD09837.1| cryptochrome 2 apoprotein [Arabidopsis thaliana] gi|30793901|gb|AAP40403.1| putative cryptochrome 2 apoprotein [Arabidopsis thaliana] gi|30794033|gb|AAP40463.1| putative cryptochrome 2 apoprotein [Arabidopsis thaliana] gi|166007535|gb|ABY77601.1| At1g04400 [Arabidopsis thaliana] gi|166007545|gb|ABY77606.1| At1g04400 [Arabidopsis thaliana] gi|166007549|gb|ABY77608.1| At1g04400 [Arabidopsis thaliana] gi|166007553|gb|ABY77610.1| At1g04400 [Arabidopsis thaliana] gi|166007559|gb|ABY77613.1| At1g04400 [Arabidopsis thaliana] gi|166007561|gb|ABY77614.1| At1g04400 [Arabidopsis thaliana] gi|166007563|gb|ABY77615.1| At1g04400 [Arabidopsis thaliana] gi|166007565|gb|ABY77616.1| At1g04400 [Arabidopsis thaliana] gi|166007569|gb|ABY77618.1| At1g04400 [Arabidopsis thaliana] gi|166007573|gb|ABY77620.1| At1g04400 [Arabidopsis thaliana] gi|166007575|gb|ABY77621.1| At1g04400 [Arabidopsis thaliana] gi|166007577|gb|ABY77622.1| At1g04400 [Arabidopsis thaliana] gi|166007579|gb|ABY77623.1| At1g04400 [Arabidopsis thaliana] gi|166007585|gb|ABY77626.1| At1g04400 [Arabidopsis thaliana] gi|166007589|gb|ABY77628.1| At1g04400 [Arabidopsis thaliana] gi|166007591|gb|ABY77629.1| At1g04400 [Arabidopsis thaliana] gi|166007597|gb|ABY77632.1| At1g04400 [Arabidopsis thaliana] gi|332189571|gb|AEE27692.1| cryptochrome 2 [Arabidopsis thaliana] gi|332189572|gb|AEE27693.1| cryptochrome 2 [Arabidopsis thaliana] Length = 612 Score = 402 bits (1033), Expect = e-110, Method: Composition-based stats. Identities = 136/494 (27%), Positives = 224/494 (45%), Gaps = 26/494 (5%) Query: 10 HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69 +VW R DLRI DN AL AA H V VFI PE+ Q ++ SL + Sbjct: 7 TIVWFRRDLRIEDNPALAAAAHEG--SVFPVFIWCPEEEGQFYPGRASRWWMKQSLAHLS 64 Query: 70 KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH 129 +SL G + N +I + TK+ +N Y+ + RD ++++L Sbjct: 65 QSLKALGSDLTLIKTHN---TISAILDCIRVTGATKVVFNHLYDPVSLVRDHTVKEKLVE 121 Query: 130 RVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188 R I +S++ +L P I + + + + K + +++ + P + +T Sbjct: 122 RGISVQSYNGDLLYEPWEIYCEKGKPFTSFNSYWKKCLDMSIESVMLPPPWRLMPITAAA 181 Query: 189 TPSNIPRFFDYPFQA---------IDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAI 239 + + + + G NA +L +F ++++ Y + Sbjct: 182 EAIWACSIEELGLENEAEKPSNALLTRAWSPGWSNADKLLNEFIEKQLIDYAKNSKKVVG 241 Query: 240 QGTSQLSPYLSIGVLSPRQCWNRLKEEF----VDLLIKPKSGAFSWLNELIWREFYRHLM 295 TS LSPYL G +S R + + + D + + A +L + RE+ R++ Sbjct: 242 NSTSLLSPYLHFGEISVRHVFQCARMKQIIWARDKNSEGEESADLFLRGIGLREYSRYIC 301 Query: 296 AFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRM 355 +P + + W+ D +AW+QG TG+P++DA MR+L GWMHNR+R+ Sbjct: 302 FNFP-FTHEQSLLSHLRFFPWDADVDKFKAWRQGRTGYPLVDAGMRELWATGWMHNRIRV 360 Query: 356 ITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQG 415 I +SF VK LL+ W+ G +YF LLD DL + GWQ+ + + D R+ NP +QG Sbjct: 361 IVSSFAVKFLLLPWKWGMKYFWDTLLDADLECDILGWQYISGSIPDGHELDRLDNPALQG 420 Query: 416 KRFDPQGTFIRHWLPELNNVPTQYIHAPHSW------LDKNDLSLNYPLPIVDHKKACHH 469 ++DP+G +IR WLPEL +PT++IH P +L NY PIVD A Sbjct: 421 AKYDPEGEYIRQWLPELARLPTEWIHHPWDAPLTVLKASGVELGTNYAKPIVDIDTAREL 480 Query: 470 TLNQYYAAKKQSLL 483 ++ ++ Sbjct: 481 LAKAISRTREAQIM 494 >gi|152995181|ref|YP_001340016.1| deoxyribodipyrimidine photo-lyase [Marinomonas sp. MWYL1] gi|150836105|gb|ABR70081.1| Deoxyribodipyrimidine photo-lyase [Marinomonas sp. MWYL1] Length = 470 Score = 402 bits (1032), Expect = e-110, Method: Composition-based stats. Identities = 183/473 (38%), Positives = 260/473 (54%), Gaps = 11/473 (2%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSD---AKVIAVFIATPEQWRQHGISARQSHFIYASL 65 HLVWLRNDLR DN ALY A ++ + + TP+QW QH S ++ + Sbjct: 4 THLVWLRNDLRCVDNPALYLASLEANFAREGIAVIVTPTPKQWEQHNESDAKNGLRAGLI 63 Query: 66 LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125 + K+L+ GI + FD + + +CL + L++NR I+E +RD+ + + Sbjct: 64 KNLAKTLATLGIPLHTLEADTFDQLPDAITVFCLSNNIKHLWFNRDLPIHEQQRDQAVCE 123 Query: 126 RLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185 +LQ I + ++ +L+ +KV+TPF + L Q D+ LP P + Sbjct: 124 QLQQHQISTHVQATDIIVSQDVLSQQGTPFKVFTPFFNRWVTMLAQQDITPLPTPDPQAE 183 Query: 186 GPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245 P + ++ PF+ D ++P A L +FC K +Y E RD P TS L Sbjct: 184 ALPEPC-LNLTWEKPFR--DDLWPADHDTAKQKLWQFCHHKERHYQEGRDYPIEPATSTL 240 Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305 SPYL++G L PRQC + + + WL EL WR+FYR LM+ +P +C + Sbjct: 241 SPYLALGALGPRQCLEAIFYTCNQEERRWQDSI--WLKELAWRDFYRQLMSHFPFLCKSR 298 Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365 PF P T + W ++ QAW +G TGFPI+DAAMRQLN GWMHNRLRM+ ASF K + Sbjct: 299 PFKPETSALIWRQNEEEFQAWCEGRTGFPIVDAAMRQLNQTGWMHNRLRMVAASFFTKLM 358 Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425 DWR GE YFMS+L+DG+ A+NNGGWQW+ASTG D+ PYFR+FNPT Q + +D G FI Sbjct: 359 FADWRRGEAYFMSKLIDGEFAANNGGWQWSASTGCDAAPYFRVFNPTRQSQTYDKNGDFI 418 Query: 426 RHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478 R ++PEL + + IH P K +YP PI+D+K A + + K Sbjct: 419 RRFVPELTKLDAKSIHDPKPEQRKQ---CHYPEPIIDYKPARLAAIAAFDELK 468 >gi|2341035|gb|AAB70435.1| Match to Arabidopsis photolysase (PHH1) gene (gb|X99061) and cryptochrome 2 apoprotein (CRY2) (gb|U43397). ESTs gb|W43661 and gb|Z25638 come from this gene [Arabidopsis thaliana] gi|50659694|gb|AAT80593.1| cryptochrome 2 [Arabidopsis thaliana] gi|50659696|gb|AAT80594.1| cryptochrome 2 [Arabidopsis thaliana] gi|50659698|gb|AAT80595.1| cryptochrome 2 [Arabidopsis thaliana] gi|50659700|gb|AAT80596.1| cryptochrome 2 [Arabidopsis thaliana] gi|50659702|gb|AAT80597.1| cryptochrome 2 [Arabidopsis thaliana] gi|50659722|gb|AAT80607.1| cryptochrome 2 [Arabidopsis thaliana] gi|50659724|gb|AAT80608.1| cryptochrome 2 [Arabidopsis thaliana] gi|50659726|gb|AAT80609.1| cryptochrome 2 [Arabidopsis thaliana] gi|50659728|gb|AAT80610.1| cryptochrome 2 [Arabidopsis thaliana] gi|50659730|gb|AAT80611.1| cryptochrome 2 [Arabidopsis thaliana] gi|50659732|gb|AAT80612.1| cryptochrome 2 [Arabidopsis thaliana] gi|50659734|gb|AAT80613.1| cryptochrome 2 [Arabidopsis thaliana] gi|50659736|gb|AAT80614.1| cryptochrome 2 [Arabidopsis thaliana] gi|50659738|gb|AAT80615.1| cryptochrome 2 [Arabidopsis thaliana] gi|50659740|gb|AAT80616.1| cryptochrome 2 [Arabidopsis thaliana] gi|50659742|gb|AAT80617.1| cryptochrome 2 [Arabidopsis thaliana] Length = 610 Score = 402 bits (1032), Expect = e-110, Method: Composition-based stats. Identities = 136/494 (27%), Positives = 224/494 (45%), Gaps = 26/494 (5%) Query: 10 HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69 +VW R DLRI DN AL AA H V VFI PE+ Q ++ SL + Sbjct: 5 TIVWFRRDLRIEDNPALAAAAHEG--SVFPVFIWCPEEEGQFYPGRASRWWMKQSLAHLS 62 Query: 70 KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH 129 +SL G + N +I + TK+ +N Y+ + RD ++++L Sbjct: 63 QSLKALGSDLTLIKTHN---TISAILDCIRVTGATKVVFNHLYDPVSLVRDHTVKEKLVE 119 Query: 130 RVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188 R I +S++ +L P I + + + + K + +++ + P + +T Sbjct: 120 RGISVQSYNGDLLYEPWEIYCEKGKPFTSFNSYWKKCLDMSIESVMLPPPWRLMPITAAA 179 Query: 189 TPSNIPRFFDYPFQA---------IDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAI 239 + + + + G NA +L +F ++++ Y + Sbjct: 180 EAIWACSIEELGLENEAEKPSNALLTRAWSPGWSNADKLLNEFIEKQLIDYAKNSKKVVG 239 Query: 240 QGTSQLSPYLSIGVLSPRQCWNRLKEEF----VDLLIKPKSGAFSWLNELIWREFYRHLM 295 TS LSPYL G +S R + + + D + + A +L + RE+ R++ Sbjct: 240 NSTSLLSPYLHFGEISVRHVFQCARMKQIIWARDKNSEGEESADLFLRGIGLREYSRYIC 299 Query: 296 AFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRM 355 +P + + W+ D +AW+QG TG+P++DA MR+L GWMHNR+R+ Sbjct: 300 FNFP-FTHEQSLLSHLRFFPWDADVDKFKAWRQGRTGYPLVDAGMRELWATGWMHNRIRV 358 Query: 356 ITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQG 415 I +SF VK LL+ W+ G +YF LLD DL + GWQ+ + + D R+ NP +QG Sbjct: 359 IVSSFAVKFLLLPWKWGMKYFWDTLLDADLECDILGWQYISGSIPDGHELDRLDNPALQG 418 Query: 416 KRFDPQGTFIRHWLPELNNVPTQYIHAPHSW------LDKNDLSLNYPLPIVDHKKACHH 469 ++DP+G +IR WLPEL +PT++IH P +L NY PIVD A Sbjct: 419 AKYDPEGEYIRQWLPELARLPTEWIHHPWDAPLTVLKASGVELGTNYAKPIVDIDTAREL 478 Query: 470 TLNQYYAAKKQSLL 483 ++ ++ Sbjct: 479 LAKAISRTREAQIM 492 >gi|166007547|gb|ABY77607.1| At1g04400 [Arabidopsis thaliana] gi|166007551|gb|ABY77609.1| At1g04400 [Arabidopsis thaliana] gi|166007555|gb|ABY77611.1| At1g04400 [Arabidopsis thaliana] gi|166007557|gb|ABY77612.1| At1g04400 [Arabidopsis thaliana] gi|166007567|gb|ABY77617.1| At1g04400 [Arabidopsis thaliana] Length = 612 Score = 402 bits (1032), Expect = e-110, Method: Composition-based stats. Identities = 135/494 (27%), Positives = 224/494 (45%), Gaps = 26/494 (5%) Query: 10 HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69 +VW R DLRI DN AL AA H V VFI PE+ Q ++ SL + Sbjct: 7 TIVWFRRDLRIEDNPALAAAAHEG--SVFPVFIWCPEEEGQFYPGRASRWWMKQSLAHLS 64 Query: 70 KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH 129 +SL G + N ++ + TK+ +N Y+ + RD ++++L Sbjct: 65 QSLKALGSDLTLIKTHN---TVSAILDCIRVTGATKVVFNHLYDPVSLVRDHTVKEKLVE 121 Query: 130 RVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188 R I +S++ +L P I + + + + K + +++ + P + +T Sbjct: 122 RGISVQSYNGDLLYEPWEIYCEKGKPFTSFNSYWKKCLDMSIESVMLPPPWRLMPITAAA 181 Query: 189 TPSNIPRFFDYPFQA---------IDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAI 239 + + + + G NA +L +F ++++ Y + Sbjct: 182 EAIWACSIEELGLENEAEKPSNALLTRAWSPGWSNADKLLNEFIEKQLIDYAKNSKKVVG 241 Query: 240 QGTSQLSPYLSIGVLSPRQCWNRLKEEF----VDLLIKPKSGAFSWLNELIWREFYRHLM 295 TS LSPYL G +S R + + + D + + A +L + RE+ R++ Sbjct: 242 NSTSLLSPYLHFGEISVRHVFQCARMKQIIWARDKNSEGEESADLFLRGIGLREYSRYIC 301 Query: 296 AFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRM 355 +P + + W+ D +AW+QG TG+P++DA MR+L GWMHNR+R+ Sbjct: 302 FNFP-FTHEQSLLSHLRFFPWDADVEKFKAWRQGRTGYPLVDAGMRELWATGWMHNRIRV 360 Query: 356 ITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQG 415 I +SF VK LL+ W+ G +YF LLD DL + GWQ+ + + D R+ NP +QG Sbjct: 361 IVSSFAVKFLLLPWKWGMKYFWDTLLDADLECDILGWQYISGSIPDGHELDRLDNPALQG 420 Query: 416 KRFDPQGTFIRHWLPELNNVPTQYIHAPHSW------LDKNDLSLNYPLPIVDHKKACHH 469 ++DP+G +IR WLPEL +PT++IH P +L NY PIVD A Sbjct: 421 AKYDPEGEYIRQWLPELARLPTEWIHHPWDAPLTVLKASGVELGTNYAKPIVDIDTAREL 480 Query: 470 TLNQYYAAKKQSLL 483 ++ ++ Sbjct: 481 LGKAISRTREAQIM 494 >gi|304650441|gb|ADM47404.1| cryptochrome 2 [Brassica juncea] Length = 619 Score = 402 bits (1032), Expect = e-110, Method: Composition-based stats. Identities = 142/500 (28%), Positives = 229/500 (45%), Gaps = 30/500 (6%) Query: 7 MSVH---LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYA 63 MS + +VW R DLRI DN AL AA H V VFI PE+ Q ++ Sbjct: 1 MSTNKKTIVWFRRDLRIEDNPALAAAAHEG--SVFPVFIWCPEEEGQFYPGRASRWWMKQ 58 Query: 64 SLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLL 123 SL + +SL G + N ++ + TK+ +N Y+ + RD + Sbjct: 59 SLAHLTQSLKALGSELTLIKTHN---TVSAILDCVRATGATKVVFNHLYDPVSLVRDHTV 115 Query: 124 EKRLQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAI 182 +++L R I +S++ +L P I + + + + K + V++ + P I Sbjct: 116 KEKLVERGIAVQSYNGDLLYEPWEIYCEKGKPFTNFNSYWKKCLDMSVESVVLPPPWRLI 175 Query: 183 RLTGPVTPSNIPRFFDYPFQA---------IDPMFPIGEQNALHILRKFCKEKVYYYVEQ 233 LT T + + + + G NA IL +F ++++ Y + Sbjct: 176 PLTAAET-VWACSLEELGLENEAEKPSNALLTRAWSPGWSNADKILTEFIEKQLIDYAKN 234 Query: 234 RDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEF----VDLLIKPKSGAFSWLNELIWRE 289 TS LSPYL G +S R+ + + + D + + A +L + R+ Sbjct: 235 SKKVVGNSTSLLSPYLHFGEISVRRVFQCARMKQIIWARDKNGQGEESAVLFLRGIGLRD 294 Query: 290 FYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWM 349 + R++ +P + + W+ D +AW+QG TG+P++DA MR+L GWM Sbjct: 295 YSRYICFNFP-FTHEQSLLSHLRFFPWDADVEKFKAWRQGRTGYPLVDAGMRELWATGWM 353 Query: 350 HNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIF 409 HNR+R+I +SF VK LL+ W+ G +YF LLD DL + GWQ+ + + D R+ Sbjct: 354 HNRIRVIVSSFAVKFLLLPWKWGMKYFWDTLLDADLECDIIGWQYISGSLPDGHELDRLD 413 Query: 410 NPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSW------LDKNDLSLNYPLPIVDH 463 NP IQG ++DP+G +IR WLPEL +PT++IH P +L NY PIVD Sbjct: 414 NPAIQGAKYDPEGEYIRQWLPELARLPTEWIHHPWDAPLTVLKASGVELGTNYAKPIVDI 473 Query: 464 KKACHHTLNQYYAAKKQSLL 483 A ++ ++ Sbjct: 474 DTARELLTKAISRTREAQIM 493 >gi|1514443|emb|CAA67508.1| blue light receptor [Arabidopsis thaliana] Length = 612 Score = 402 bits (1032), Expect = e-110, Method: Composition-based stats. Identities = 136/494 (27%), Positives = 224/494 (45%), Gaps = 26/494 (5%) Query: 10 HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69 +VW R DLRI DN AL AA H V VFI PE+ Q ++ SL + Sbjct: 7 TIVWFRRDLRIEDNPALAAAAHEG--SVFPVFIWCPEEEGQFYPGRASRWWMKQSLAHLS 64 Query: 70 KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH 129 +SL G + N +I + TK+ +N Y+ + RD ++++L Sbjct: 65 QSLKALGSDLTLIKTHN---TISAILDCIRVTGATKVVFNHLYDPVSLVRDHTVKEKLVE 121 Query: 130 RVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188 R I +S++ +L P I + + + + K + +++ + P + +T Sbjct: 122 RGISVQSYNGDLLYEPWEIYCEKGKPFTSFNSYWKKCLDMSIESVMLPPPWRLMPITAAA 181 Query: 189 TPSNIPRFFDYPFQA---------IDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAI 239 + + + + G NA +L +F ++++ Y + Sbjct: 182 EAIWACSIEELGLENEAEKPSNALLTRAWSPGWSNADKLLNEFIEKQLIDYAKNSKKVVG 241 Query: 240 QGTSQLSPYLSIGVLSPRQCWNRLKEEF----VDLLIKPKSGAFSWLNELIWREFYRHLM 295 TS LSPYL G +S R + + + D + + A +L + RE+ R++ Sbjct: 242 NSTSLLSPYLHFGEISVRHVFQCARMKQIIWARDKNSEGEESADLFLRGIGLREYSRYIC 301 Query: 296 AFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRM 355 +P + + W+ D +AW+QG TG+P++DA MR+L GWMHNR+R+ Sbjct: 302 FNFP-FTHEQSLLSHLRFFPWDADVDKFKAWRQGRTGYPLVDAGMRELWATGWMHNRIRV 360 Query: 356 ITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQG 415 I +SF VK LL+ W+ G +YF LLD DL + GWQ+ + + D R+ NP +QG Sbjct: 361 IVSSFAVKFLLLPWKWGMKYFWDTLLDADLECDILGWQYISGSIPDGHELDRLDNPALQG 420 Query: 416 KRFDPQGTFIRHWLPELNNVPTQYIHAPHSW------LDKNDLSLNYPLPIVDHKKACHH 469 ++DP+G +IR WLPEL +PT++IH P +L NY PIVD A Sbjct: 421 AKYDPEGEYIRQWLPELARLPTEWIHHPWDAPLTVLKASGVELGTNYAKPIVDIDTAREL 480 Query: 470 TLNQYYAAKKQSLL 483 ++ ++ Sbjct: 481 LAKAISRTREAQIM 494 >gi|224498666|ref|ZP_03667015.1| hypothetical protein LmonF1_02791 [Listeria monocytogenes Finland 1988] Length = 467 Score = 402 bits (1032), Expect = e-110, Method: Composition-based stats. Identities = 167/484 (34%), Positives = 245/484 (50%), Gaps = 35/484 (7%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 ++W R DLR++DNKALY AC D ++ +F P Q+ + +AS+ Sbjct: 2 TSVMWFRRDLRVSDNKALYHACKEDD--LLLLFQVNPAQFIT---GSPSHQAFFASVAHF 56 Query: 69 QKSLSQ--KGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 ++ + + + E L S+ K+++NR RD+ + Sbjct: 57 KQEVDKTALLQIMFGEPVGCLKQLKETLPSW------DKVYFNRDETGYGAERDEAAKTF 110 Query: 127 LQHR-VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185 + + ++F DS L + + YK++TP+ K + + + P Sbjct: 111 FDEQEIEVQAFHDSYLHSAEEVKKSPTEYYKIFTPYYKKWREEIKET-----PFKVTLKA 165 Query: 186 GPVTPSNIPRFFDYPFQAIDPMFPI---GEQNALHILRKFCKEKVYYYVEQRDIPAIQGT 242 + N+ ++ F + FPI GE+ A L F K + Y + RD P + T Sbjct: 166 DNIRKENLFPKYEEQFAEMTCDFPILDSGEKTANTRLANFIKHDIADYDKARDFPELDKT 225 Query: 243 SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVC 302 S LS YL G +S R W L+E + G ++ EL WR+FY + +P+ Sbjct: 226 SHLSRYLRTGEISIRTIWQALQE------TEATEGRATFEKELCWRDFYNMIYVSFPNQ- 278 Query: 303 MGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLV 362 +P IEW + +AW+ G TGFP++DAAMRQL GWMHNRLRM+TASFL Sbjct: 279 KNEPIQENYRFIEWENNREFFKAWQDGKTGFPLVDAAMRQLKETGWMHNRLRMVTASFLT 338 Query: 363 KDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQG 422 KDLL+DWR GE+YF L+D D ASN GGWQWAASTG D+VPYFRIFNPT Q ++FDP G Sbjct: 339 KDLLIDWRFGEKYFQQMLIDYDSASNIGGWQWAASTGTDAVPYFRIFNPTTQSQKFDPTG 398 Query: 423 TFIRHWLPELNNVPTQYIHAPHSWLDKND------LSLNYPLPIVDHKKACHHTLNQYYA 476 FIR ++ EL N+P +YIH P + L +YP P++DHK+ + +Y Sbjct: 399 KFIRKYVKELANLPDKYIHQPEKMSETEQKEYGLLLGKDYPFPLIDHKERRKLAIARYEF 458 Query: 477 AKKQ 480 +K+ Sbjct: 459 SKEH 462 >gi|3551219|dbj|BAA32808.1| blue-light photoreceptor [Adiantum capillus-veneris] gi|3551225|dbj|BAA32811.1| blue-light photoreceptor [Adiantum capillus-veneris] Length = 679 Score = 402 bits (1032), Expect = e-109, Method: Composition-based stats. Identities = 147/497 (29%), Positives = 235/497 (47%), Gaps = 27/497 (5%) Query: 1 MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHF 60 M A T ++ +VW R DLRI DN AL AA V+ VFI +PE+ Q + Sbjct: 1 MAAHTIVAHTIVWFRRDLRIEDNPALVAAVRAG--PVLPVFIWSPEEEGQFLPGRVSRWW 58 Query: 61 IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120 + SL+ + +SL+ G + SN + L T++FYN Y+ + RD Sbjct: 59 LKQSLVHLNESLTILGAPLVMRRASNV---LAALLEIKKATGATQVFYNHLYDPVSLVRD 115 Query: 121 KLLEKRL-QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPV 179 +++ L Q +I SF+ +L P + + Q + ++ F + + + + LP Sbjct: 116 HRVKQGLSQAGIIVNSFNADLLYEPWEVNDDNGQAFTTFSGFWAKCMDMPAEPEAQILPP 175 Query: 180 PAI-RLTGPVTPSNIPRFFDYPFQA------IDPMFPIGEQNALHILRKFCKEKVYYYVE 232 I + GP +I + + G NA L F + Y Sbjct: 176 KRILKFPGPSLSCSIEDLDLEDELEKGSNALLARAWQPGWANADRALESFINGSLMEYAA 235 Query: 233 QRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFV----DLLIKPKSGAFSWLNELIWR 288 R TS LSP+L G +S R+ ++ ++ + V + ++ + +L + +R Sbjct: 236 NRQKVDSATTSLLSPHLHYGEVSVRKIFHNVRMKQVLWVKEGRVEAEESVNLFLRSIGFR 295 Query: 289 EFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGW 348 E+ R+L +P + + + W D +AW+QG TG+P++DA MR+L GW Sbjct: 296 EYSRYLSFNFP-FTHERSLLYNLKFFPWRVDESYFKAWRQGRTGYPLVDAGMRELWATGW 354 Query: 349 MHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRI 408 +HN++R+I +SF VK L + WR G +YF LLD DL S+ GWQ+ + + D RI Sbjct: 355 LHNQIRVIVSSFCVKFLQLPWRWGMKYFWDTLLDADLESDVLGWQYISGSLPDGHELDRI 414 Query: 409 FNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSW------LDKNDLSLNYPLPIVD 462 NP I+G +FDP G ++R WLPEL+ +PT++IH P +L NYP PIV+ Sbjct: 415 DNPQIEGYKFDPYGEYVRRWLPELSRLPTEWIHHPWDAPPSVLRAAGIELGSNYPRPIVE 474 Query: 463 HKKACHH---TLNQYYA 476 A L + +A Sbjct: 475 IAAARERLEQALAEMWA 491 >gi|50659746|gb|AAT80619.1| cryptochrome 2 [Arabidopsis thaliana] gi|50659748|gb|AAT80620.1| cryptochrome 2 [Arabidopsis thaliana] gi|50659750|gb|AAT80621.1| cryptochrome 2 [Arabidopsis thaliana] gi|50659752|gb|AAT80622.1| cryptochrome 2 [Arabidopsis thaliana] gi|50659754|gb|AAT80623.1| cryptochrome 2 [Arabidopsis thaliana] Length = 610 Score = 401 bits (1031), Expect = e-109, Method: Composition-based stats. Identities = 135/494 (27%), Positives = 224/494 (45%), Gaps = 26/494 (5%) Query: 10 HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69 +VW R DLRI DN AL AA H V VFI PE+ Q ++ SL + Sbjct: 5 TIVWFRRDLRIEDNPALAAAAHEG--SVFPVFIWCPEEEGQFYPGRASRWWMKQSLAHLS 62 Query: 70 KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH 129 +SL G + N ++ + TK+ +N Y+ + RD ++++L Sbjct: 63 QSLKALGSDLTLIKTHN---TVSAILDCIRVTGATKVVFNHLYDPVSLVRDHTVKEKLVE 119 Query: 130 RVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188 R I +S++ +L P I + + + + K + +++ + P + +T Sbjct: 120 RGISVQSYNGDLLYEPWEIYCEKGKPFTSFNSYWKKCLDMSIESVMLPPPWRLMPITAAA 179 Query: 189 TPSNIPRFFDYPFQA---------IDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAI 239 + + + + G NA +L +F ++++ Y + Sbjct: 180 EAIWACSIEELGLENEAEKPSNALLTRAWSPGWSNADKLLNEFIEKQLIDYAKNSKKVVG 239 Query: 240 QGTSQLSPYLSIGVLSPRQCWNRLKEEF----VDLLIKPKSGAFSWLNELIWREFYRHLM 295 TS LSPYL G +S R + + + D + + A +L + RE+ R++ Sbjct: 240 NSTSLLSPYLHFGEISVRHVFQCARMKQIIWARDKNSEGEESADLFLRGIGLREYSRYIC 299 Query: 296 AFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRM 355 +P + + W+ D +AW+QG TG+P++DA MR+L GWMHNR+R+ Sbjct: 300 FNFP-FTHEQSLLSHLRFFPWDADVEKFKAWRQGRTGYPLVDAGMRELWATGWMHNRIRV 358 Query: 356 ITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQG 415 I +SF VK LL+ W+ G +YF LLD DL + GWQ+ + + D R+ NP +QG Sbjct: 359 IVSSFAVKFLLLPWKWGMKYFWDTLLDADLECDILGWQYISGSIPDGHELDRLDNPALQG 418 Query: 416 KRFDPQGTFIRHWLPELNNVPTQYIHAPHSW------LDKNDLSLNYPLPIVDHKKACHH 469 ++DP+G +IR WLPEL +PT++IH P +L NY PIVD A Sbjct: 419 AKYDPEGEYIRQWLPELARLPTEWIHHPWDAPLTVLKASGVELGTNYAKPIVDIDTAREL 478 Query: 470 TLNQYYAAKKQSLL 483 ++ ++ Sbjct: 479 LGKAISRTREAQIM 492 >gi|296136973|ref|YP_003644215.1| DNA photolyase FAD-binding protein [Thiomonas intermedia K12] gi|295797095|gb|ADG31885.1| DNA photolyase FAD-binding protein [Thiomonas intermedia K12] Length = 497 Score = 401 bits (1031), Expect = e-109, Method: Composition-based stats. Identities = 167/497 (33%), Positives = 243/497 (48%), Gaps = 29/497 (5%) Query: 2 KATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIA-VF---IATPEQWRQHGISARQ 57 A + + LVWLR DLR+ DN AL+AA D +A VF I P ++ + R+ Sbjct: 12 SAVEKLPLGLVWLRRDLRLHDNAALHAALRACDKVALAFVFDRDILDP-LLQRGLQADRR 70 Query: 58 SHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEV 117 FI A++ ++ +L ++G S E + + +F R E + Sbjct: 71 VEFILAAVAEIDAALRERGAALIVRHASAR----EAIPVLAAELGAQAVFCGRDDEPAAL 126 Query: 118 RRDKLLEKRLQHRV-ICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRS 176 RD +E+ L+ S + ++ +L + Y V+TP+R A + + Sbjct: 127 ARDAAVERALRQDGRALHSVKEHMIFERDEVLTAQDKPYSVFTPYRTAWLARYAAQPQQP 186 Query: 177 L----PVPAIRLTGPVTPSNIPRFFDYPFQAIDPM---FPIGEQNALHILRKFCKEKVYY 229 + + +P + F + P+G A ++ F ++ Sbjct: 187 VDSAVTSARLAALPAALQQPLPTLSELGFAPSNLHALKLPLGASGASALVDDF-SRRIDD 245 Query: 230 YVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWRE 289 Y + RD PA +G S LS +L G +S R+ GA WL+EL+WR+ Sbjct: 246 YDQARDYPARKGPSYLSVHLRFGTVSVRELVAMAWARQQA----GSEGARVWLSELVWRD 301 Query: 290 FYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWM 349 FY ++ +P V + F P ++I+W D AW +G TG+P++DAAMRQ+N G+M Sbjct: 302 FYFQILFHHPHV-VNAAFKPVYDRIQWRNDPAQFAAWCEGRTGYPLVDAAMRQINQTGYM 360 Query: 350 HNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIF 409 HNRLRM+ ASFL KDL +DWR GE YF L D DLA+NNGGWQWAAS+G D+ PYFRIF Sbjct: 361 HNRLRMVVASFLTKDLGIDWRWGERYFADHLNDFDLAANNGGWQWAASSGCDAQPYFRIF 420 Query: 410 NPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDK------NDLSLNYPLPIVDH 463 NP Q ++FD G FIR ++PEL + ++ IHAP L YP PIV H Sbjct: 421 NPVAQSEKFDAGGDFIRRYVPELAQLASKDIHAPWKAPAALLQAAGVRLGSTYPAPIVRH 480 Query: 464 KKACHHTLNQYYAAKKQ 480 A TL +Y K Q Sbjct: 481 DLARAETLERYAVVKAQ 497 >gi|297848668|ref|XP_002892215.1| hypothetical protein ARALYDRAFT_470417 [Arabidopsis lyrata subsp. lyrata] gi|297338057|gb|EFH68474.1| hypothetical protein ARALYDRAFT_470417 [Arabidopsis lyrata subsp. lyrata] Length = 612 Score = 401 bits (1031), Expect = e-109, Method: Composition-based stats. Identities = 137/492 (27%), Positives = 228/492 (46%), Gaps = 29/492 (5%) Query: 10 HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69 +VW R DLRI DN AL AA H V VFI PE+ Q ++ SL + Sbjct: 7 TIVWFRRDLRIEDNPALAAAAHEG--SVFPVFIWCPEEEGQFYPGRASRWWMKQSLAHLS 64 Query: 70 KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH 129 +SL G + + N ++ + TK+ +N Y+ + RD ++++L Sbjct: 65 QSLKALGSDLTFIKTHN---TVSAILDCIRVTGATKVVFNHLYDPVSLVRDHTVKEKLVE 121 Query: 130 RVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188 R I +S++ +L P I + + ++ + K + +++ + P + +T Sbjct: 122 RGISVQSYNGDLLYEPWEIYCEKGKPFTSFSSYWKKCLDMPIESVMLPPPWRLMPITAAA 181 Query: 189 TPSNIPRFFDYPFQA---------IDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAI 239 + + + + G NA IL +F ++++ Y + Sbjct: 182 EAVWACSIEELGLENEAEKPSNALLTRAWSPGWSNADKILNEFIEKQLIDYAKNSKKVVG 241 Query: 240 QGTSQLSPYLSIGVLSPRQCWNRLKEEF----VDLLIKPKSGAFSWLNELIWREFYRHLM 295 TS LSPYL G +S R + + + D + + A +L + RE+ R++ Sbjct: 242 NSTSLLSPYLHFGEISVRHVFQCARMKQIIWARDKNSEGEESADLFLRGIGLREYSRYIC 301 Query: 296 AFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRM 355 +P + + W+ D +AW+QG TG+P++DA MR+L GWMHNR+R+ Sbjct: 302 FNFP-FTHEQSLLSHLRFFPWDADVDKFKAWRQGRTGYPLVDAGMRELWATGWMHNRIRV 360 Query: 356 ITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQG 415 I +SF VK LL+ W+ G +YF LLD DL + GWQ+ + + D R+ NP +QG Sbjct: 361 IVSSFAVKFLLLPWKWGMKYFWDTLLDADLECDILGWQYISGSIPDGHELDRLDNPALQG 420 Query: 416 KRFDPQGTFIRHWLPELNNVPTQYIHAPHSW------LDKNDLSLNYPLPIVDHKKACH- 468 ++DP+G +IR WLPEL +PT++IH P +L NY PIVD + A Sbjct: 421 AKYDPEGEYIRQWLPELARLPTEWIHHPWDAPLTVLKASGVELGTNYAKPIVDIETAREL 480 Query: 469 --HTLNQYYAAK 478 +++ A+ Sbjct: 481 LARAISRTREAQ 492 >gi|159898493|ref|YP_001544740.1| deoxyribodipyrimidine photo-lyase [Herpetosiphon aurantiacus ATCC 23779] gi|159891532|gb|ABX04612.1| Deoxyribodipyrimidine photo-lyase [Herpetosiphon aurantiacus ATCC 23779] Length = 486 Score = 401 bits (1031), Expect = e-109, Method: Composition-based stats. Identities = 174/489 (35%), Positives = 248/489 (50%), Gaps = 21/489 (4%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 + W R DLR+TD++ALYAA S VI VFI + A A L + Sbjct: 2 PVICWFRRDLRLTDHRALYAAAEASAGAVIPVFILDDTILHDGYVGAALIAVTLAMLEAL 61 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128 L Q+G + L + + + +++NR Y ++RD ++ L+ Sbjct: 62 DHDLQQRGSRLIVRHG----QPLAELQRLVSETQASGVYWNRDYLPYAIKRDSAVKHWLR 117 Query: 129 HRVI-CKSFDDSVLLPPGSILNHALQ-MYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 + + SF DSVL+ P + Q Y VY + K + + +P P+ + Sbjct: 118 EQGLQAHSFHDSVLVEPEGLKTKTEQKPYVVYGSYVKRWSELAYHQAEQLVPAPSKFVAP 177 Query: 187 P--VTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVY----YYVEQRDIPAIQ 240 P + IP D F+ + +GE A L +F + Y + R++PA Sbjct: 178 PSDLASLPIPSLADLGFELQQTIPQVGETIAQQRLAQFFDRRQKLSVLKYTKAREVPAEA 237 Query: 241 GTSQLSPYLSIGVLSPRQCWNRLKEEFVD-LLIKPKSGAFSWLNELIWREFYRHLMAFYP 299 GTSQLS L +G +S RQC + + + L + + G +WL EL WR++Y L+ P Sbjct: 238 GTSQLSVDLRMGTISIRQCLKQAVDLLTEPLNAEQRQGVDTWLKELAWRDYYTQLIYHNP 297 Query: 300 SVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITAS 359 + G P ++I W D AW+QG TG+PI+DA RQLN + WMHNR+RMI+AS Sbjct: 298 YMLNG-SLDPRYDQIIWRNDPSEFLAWQQGQTGYPIVDAGQRQLNQMAWMHNRVRMISAS 356 Query: 360 FLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAAS-TGNDSVPYFRIFNPTIQGKRF 418 FL+KDLL+DWR GE YFM QL DGD +NNGGWQWAA +G + PYFRIFNP Q K+ Sbjct: 357 FLIKDLLIDWRWGERYFMQQLCDGDPTANNGGWQWAAGSSGPSAQPYFRIFNPIAQSKKH 416 Query: 419 DPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND------LSLNYPLPIVDHKKACHHTLN 472 DP G +IR ++PEL NVP YIH P + + +YP P+V+H A L Sbjct: 417 DPDGQYIRRFVPELANVPDHYIHEPWTMPPAVQAHVGCVIGRDYPAPLVEHSFARERALA 476 Query: 473 QYYAAKKQS 481 Y A + + Sbjct: 477 AYRTALQTN 485 >gi|300710895|ref|YP_003736709.1| deoxyribodipyrimidine photo-lyase [Halalkalicoccus jeotgali B3] gi|299124578|gb|ADJ14917.1| deoxyribodipyrimidine photo-lyase [Halalkalicoccus jeotgali B3] Length = 459 Score = 401 bits (1031), Expect = e-109, Method: Composition-based stats. Identities = 155/473 (32%), Positives = 236/473 (49%), Gaps = 20/473 (4%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 + L W R DLR+TDN+ L + + VF+ + + F+ +L + Sbjct: 1 MDLCWHRRDLRVTDNRML------AGRNALPVFVLDEAVLE--HAAPPRVAFMLDALESL 52 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128 +++ ++G + D + + + V + +N Y RD+ + L Sbjct: 53 REAYRERGGNLLIERG----DPSAVVPTLAAEFGVDTVVWNHDYSGLARERDEAVRAALD 108 Query: 129 HRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187 R I + + D+V+ PGSI Y V+T F K + + + ++ P Sbjct: 109 ERGINHEQYHDAVIHEPGSITTTDGDPYSVFTYFGKKWLDRDKPDPVSAPES----VSDP 164 Query: 188 VTPSNIPRFFDYPFQAIDPMFP-IGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246 P IP D F+A + P G A + L FC + Y E RD P+ GTS+LS Sbjct: 165 DDPGGIPALSDLGFEAPEGSVPDAGPDAAENRLETFCDGPIRRYEEDRDYPSRGGTSRLS 224 Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGA-FSWLNELIWREFYRHLMAFYPSVCMGK 305 L G + R+ + + + K + G+ + ++L WREFY ++ ++P+V K Sbjct: 225 VDLKFGTVGIRRVYAATENAKAEAGSKEERGSVEEFQSQLAWREFYTQVLYYHPNVVT-K 283 Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365 + + +IEW D AW +G TG+PI+DA MRQL WMHNR+RM+ A+FL KDL Sbjct: 284 NYKTYDGEIEWRTDEEGFDAWTEGKTGYPIVDAGMRQLREESWMHNRVRMLVAAFLTKDL 343 Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425 LVDWR G ++F L+D D ++ GGWQWAASTG D+ PYFRIFNP QG+R+DP +I Sbjct: 344 LVDWREGYDWFRKHLVDHDTGNDTGGWQWAASTGTDAQPYFRIFNPMTQGERYDPDAEYI 403 Query: 426 RHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478 R ++PEL V + IHA H D+ + YP PIVDH + + A+ Sbjct: 404 REYVPELREVDPKTIHAWHDLDDEARPDVGYPAPIVDHAIRREVAIETFERAR 456 >gi|18026276|gb|AAL16377.1| cryptochrome 2 [Arabidopsis thaliana] gi|18026278|gb|AAL16378.1| cryptochrome 2 [Arabidopsis thaliana] gi|166007539|gb|ABY77603.1| At1g04400 [Arabidopsis thaliana] Length = 612 Score = 401 bits (1030), Expect = e-109, Method: Composition-based stats. Identities = 135/494 (27%), Positives = 224/494 (45%), Gaps = 26/494 (5%) Query: 10 HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69 +VW R DLRI DN AL AA H V VFI PE+ Q ++ SL + Sbjct: 7 TIVWFRRDLRIEDNPALAAAAHEG--SVFPVFIWCPEEEGQFYPGRASRWWMKQSLAHLS 64 Query: 70 KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH 129 +SL G + N +I + TK+ +N Y+ + RD ++++L Sbjct: 65 QSLKALGSDLTLIKTHN---TISAILDCIRVTGATKVVFNHLYDPVSLVRDHTVKEKLVE 121 Query: 130 RVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188 R I +S++ +L P I + + + + K + +++ + P + +T Sbjct: 122 RGISVQSYNGDLLYEPWEIYCEKGKPFTSFNSYWKKCLDMSIESVMLPPPWRLMPITAAA 181 Query: 189 TPSNIPRFFDYPFQA---------IDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAI 239 + + + + G NA +L +F ++++ Y + Sbjct: 182 EAIWACSIEELGLENEAEKPSNALLTRAWSPGWSNADKLLNEFIEKQLIDYAKNSKKVVG 241 Query: 240 QGTSQLSPYLSIGVLSPRQCWNRLKEEF----VDLLIKPKSGAFSWLNELIWREFYRHLM 295 TS LSPYL G +S R + + + D + + A +L + RE+ R++ Sbjct: 242 NSTSLLSPYLHFGEISVRHVFQCARMKQIIWARDKNSEGEESADLFLRGIGLREYSRYIC 301 Query: 296 AFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRM 355 +P + + W+ D +AW+QG TG+P++DA MR+L GWMHNR+R+ Sbjct: 302 FNFP-FTHEQSLLSHLRFFPWDADVDKFKAWRQGRTGYPLVDAGMRELWATGWMHNRIRV 360 Query: 356 ITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQG 415 I +SF +K LL+ W+ G +YF LLD DL + GWQ+ + + D R+ NP +QG Sbjct: 361 IVSSFAMKFLLLPWKWGMKYFWDTLLDADLECDILGWQYISGSIPDGHELDRLDNPALQG 420 Query: 416 KRFDPQGTFIRHWLPELNNVPTQYIHAPHSW------LDKNDLSLNYPLPIVDHKKACHH 469 ++DP+G +IR WLPEL +PT++IH P +L NY PIVD A Sbjct: 421 AKYDPEGEYIRQWLPELARLPTEWIHHPWDAPLTVLKASGVELGTNYAKPIVDIDIAREL 480 Query: 470 TLNQYYAAKKQSLL 483 ++ ++ Sbjct: 481 LAKAISRTREAQIM 494 >gi|93005295|ref|YP_579732.1| deoxyribodipyrimidine photolyase [Psychrobacter cryohalolentis K5] gi|92392973|gb|ABE74248.1| Deoxyribodipyrimidine photo-lyase type I [Psychrobacter cryohalolentis K5] Length = 541 Score = 401 bits (1030), Expect = e-109, Method: Composition-based stats. Identities = 196/516 (37%), Positives = 273/516 (52%), Gaps = 50/516 (9%) Query: 11 LVWLRNDLRITDNKALYAACHNSD---AKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67 L+W R DLR+ DN AL A C ++ A++ AVF TPEQW+ H +S Q I +L Sbjct: 25 LMWFRRDLRVHDNTALAAICERANEDNAQLSAVFFLTPEQWQAHDMSLTQLDHIARTLPI 84 Query: 68 VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127 + + L Q I+ C +F D I L + C ++ + N +YE NEV RD+LL K+L Sbjct: 85 LAEKLHQLNIILTVQVCPSFTDCIVTLSALCESNNISCVMANHEYEGNEVARDELLTKQL 144 Query: 128 QHR-VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLR----------- 175 + + + D +LPP SI + MY+V+TPF K L +D++ Sbjct: 145 ANNEIEFIRWHDQCILPPKSITTNDDSMYQVFTPFYKKWRHTLEVSDIQIHTALAIIDNK 204 Query: 176 ----SLPVPAIRLTGPVTPSNIPRFFDY--------PFQAIDP---------MFPIGEQN 214 +L + T + DY +Q ID +P GE Sbjct: 205 QVNLTLSEHSANTTQDIEALCKKTVHDYQEYLQTHESYQNIDTDKQISQARLAYPAGEAE 264 Query: 215 ALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKP 274 A H L F + + Y RD+P++Q TSQLS YL+IG +SPR C+ + + L Sbjct: 265 ACHRLEHFIADDIDNYDVSRDVPSLQATSQLSTYLTIGAISPRLCYLQATQALGKLRRND 324 Query: 275 --------KSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEK-IEWNKDSHLLQA 325 + W++EL WR+FYRH++ + P + + + T+K I W+ D A Sbjct: 325 GDNFDSGDNNDINRWISELAWRDFYRHVLDYKPELIRHQAYKYETDKKINWSYDEDAFAA 384 Query: 326 WKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDL 385 W++G TG P++DAAMR LN G+MHNRLRM+TA FL KDLL+DWR GE YFM QL+DGD Sbjct: 385 WREGKTGVPLVDAAMRCLNATGFMHNRLRMVTAMFLTKDLLIDWRWGERYFMQQLIDGDF 444 Query: 386 ASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHS 445 ASNNGGWQW+ASTG DS PYFRI NP Q K D +G FI+ WLPEL +PT +H Sbjct: 445 ASNNGGWQWSASTGTDSAPYFRIMNPFSQAKSHDTEGIFIKTWLPELKPIPTSILHREDK 504 Query: 446 WLDKND-----LSLNYPLPIVDHKKACHHTLNQYYA 476 ++YP+PIV+HK A + ++ Sbjct: 505 MRKALSKNGTFADIDYPVPIVEHKLARQLVIAEFKK 540 >gi|241662182|ref|YP_002980542.1| deoxyribodipyrimidine photo-lyase [Ralstonia pickettii 12D] gi|240864209|gb|ACS61870.1| Deoxyribodipyrimidine photo-lyase [Ralstonia pickettii 12D] Length = 518 Score = 401 bits (1030), Expect = e-109, Method: Composition-based stats. Identities = 173/490 (35%), Positives = 248/490 (50%), Gaps = 31/490 (6%) Query: 10 HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGI----SARQSHFIYASL 65 LVW R DLR D+ AL+ A + +V VF+ + + R+ FI AS+ Sbjct: 20 GLVWFRRDLRHVDHAALHYALRHC-REVYCVFVFDRDILDALLARGLKADRRVEFIRASI 78 Query: 66 LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125 +++ +L + G D + Q V +F N E + RD+ + K Sbjct: 79 EELRGALREAGGDLIVVH----DHPRHAIPEIARQLNVEAVFANHDEEPSAQARDEAVRK 134 Query: 126 RLQHR-VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVP---- 180 L + F D V+ ILN + Y V+TP++ A + L DLR+ P Sbjct: 135 ALAQQPCAWFDFKDQVIFERDEILNGQGKPYGVFTPYKNAWLAALTPLDLRAYPTEPYFG 194 Query: 181 AIRLTGPVTPSNIPRFFDYPFQA---IDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIP 237 A+ P F + P G +L +F +E++ Y +RD P Sbjct: 195 ALARPPEALAQPTPALEAMGFARTNLSEIALPSGMSGGQTLLDEF-EERMDDYHARRDFP 253 Query: 238 AIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAF 297 A++G S LS +L G +S R R +++ GA +WL+EL+WR+FY ++ Sbjct: 254 AVRGPSYLSTHLRFGTVSIRTLAARAHA----AMLRGSRGAATWLSELVWRDFYFMILHH 309 Query: 298 YPSVCMGKPFIPWTEKIEW---NKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLR 354 P + G F P ++I W + +AWK TG+P++DAAM Q+ G+MHNRLR Sbjct: 310 RPDLADGAAFHPEFDRIRWVDGDTGDARFEAWKAARTGYPLVDAAMLQIFQSGYMHNRLR 369 Query: 355 MITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQ 414 M+ ASFL+KDL +DWR GE+YF L D D A+NNGGWQWAAS+G D+ P+FRIFNP Q Sbjct: 370 MVAASFLIKDLGIDWRRGEQYFADVLNDFDFAANNGGWQWAASSGCDAQPWFRIFNPVTQ 429 Query: 415 GKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWL------DKNDLSLNYPLPIVDHKKACH 468 ++FDPQG FIR +LP+L +P +YIHAP + L YPLPIVDH A Sbjct: 430 SEKFDPQGRFIRKYLPQLAKLPDKYIHAPWTAPANVLKEASVVLGETYPLPIVDHAAARA 489 Query: 469 HTLNQYYAAK 478 TL++Y K Sbjct: 490 ATLDRYAVTK 499 >gi|16416405|dbj|BAB70665.1| blue-light receptor cryptochrome [Physcomitrella patens] Length = 727 Score = 401 bits (1030), Expect = e-109, Method: Composition-based stats. Identities = 145/505 (28%), Positives = 232/505 (45%), Gaps = 37/505 (7%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 + +VW R DLR+ DN AL AA V+ VF+ +P + Q ++ SL Sbjct: 2 AACTIVWFRRDLRLEDNPALIAAARAG--TVVPVFVWSPAEDGQFHPGRVSRWWLKQSLT 59 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 ++ SL + G + D + L T++FYN Y+ + RD +++ Sbjct: 60 HLELSLKKLGSPLILRKSP---DMLSVLLEIAEATGATQVFYNHLYDPVSLVRDHRVKQG 116 Query: 127 LQHRVIC-KSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185 L R I +F+ +L P + + Q + VY F K + + + LP RLT Sbjct: 117 LSQRGIVVHTFNGDLLYEPWEVYDEEGQAFTVYEAFWKKCMSMPFEPEAPLLP--PRRLT 174 Query: 186 GPVTPSNIPRFFDYPFQA---------IDPMFPIGEQNALHILRKFCKEKVYYYVEQR-- 234 GP+ + + + + G A L F + + Y R Sbjct: 175 GPIGKIVGCNAEELGLEDEFEKSSNALLARAWCPGWGFANKSLDSFLRSPLIDYARDRQK 234 Query: 235 -DIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFS----WLNELIWRE 289 D + TS LSP+L G LS R+ ++ +++ + + +G + +L L +RE Sbjct: 235 ADGASGTPTSLLSPHLHFGELSVRKIFHEVRKRQITWAREGNAGGEASVNMFLRALGFRE 294 Query: 290 FYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWM 349 + R+L +P + + + W D +AW+QG TG+P++DA MR+L GW Sbjct: 295 YSRYLSFHFP-FTHERSLLANLKSFPWRADEGYFKAWRQGRTGYPLVDAGMRELWATGWA 353 Query: 350 HNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIF 409 HNR+R++ ASF VK L + WR G +YF LLD DL + GWQ+ + + D RI Sbjct: 354 HNRIRVVVASFSVKFLQLPWRWGMKYFWDVLLDADLECDVLGWQYISGSLPDGHELDRIE 413 Query: 410 NPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKN------DLSLNYPLPIVDH 463 NP ++G RFDP G ++R W+PEL +P +++H P +L NYP PIV+ Sbjct: 414 NPEVEGYRFDPDGDYVRRWIPELARLPNEWVHHPWDAPPSALRAAGVELGTNYPRPIVEI 473 Query: 464 KKACHH---TLNQYY---AAKKQSL 482 A +L + + AA K +L Sbjct: 474 GAARERLQASLAEMWERDAAMKAAL 498 >gi|331222855|ref|XP_003324101.1| photolyase [Puccinia graminis f. sp. tritici CRL 75-36-700-3] gi|309303091|gb|EFP79682.1| photolyase [Puccinia graminis f. sp. tritici CRL 75-36-700-3] Length = 606 Score = 400 bits (1029), Expect = e-109, Method: Composition-based stats. Identities = 179/531 (33%), Positives = 258/531 (48%), Gaps = 59/531 (11%) Query: 4 TTAMSVHLVWLR-NDLRITDNKALYAACH---NSDAKVIAVFIATPEQWRQHGISARQSH 59 A V + W+R DLR++DN+AL A + ++ + + +P +R H S R+ Sbjct: 70 QKAEGVVVWWMRMRDLRLSDNRALAVASQLAKDQAKHLVVLHVLSPGDYRSHDRSPRRID 129 Query: 60 FIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRR 119 F+ +L +Q L + I E + + L N ++E++E+RR Sbjct: 130 FVLRNLSDLQARLHKLNIPLWTITVEPRHQIPEKIIQLVSSWGASYLTANIEHEVDELRR 189 Query: 120 DKLLEKRLQHRVICKSF-DDSVLLPPGSILNHALQMYKVYTPF---RKALIQNLVQADLR 175 D + + + I F D+ L+ PG +L + Y V+ P+ LI + + + Sbjct: 190 DIQVLNLAREKNIGVDFLHDTCLVEPGKVLTKENKPYSVFGPWQRNWANLINSNLDEYIA 249 Query: 176 SLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPM--------------FPIGEQNALHILRK 221 + + + F+ P A P + GEQ A +L + Sbjct: 250 AAEDCHPNDPSIKDVEILNQLFECPVPASLPGFELSAEDSKIMHENWKAGEQAAEELLNQ 309 Query: 222 FC----------------------------KEKVYYYVEQRDIPAIQGTSQLSPYLSIGV 253 F + V Y R+ P + GTS+LS YL+ GV Sbjct: 310 FLNSPLKSQSTRQTTLTKDGKTSGATTRRAETIVEQYSSLRNRPDLPGTSRLSAYLAAGV 369 Query: 254 LSPRQCWNRLKEEFVD--------LLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305 +SPR C + + G W +EL WR+FY+H++A +P VCM K Sbjct: 370 ISPRACIRASFRISEKGKKPVDGLQVDRRDLGVGVWQSELGWRDFYQHVLAAWPRVCMRK 429 Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365 PF E + W +D LL+ WKQG TG+P IDA MRQL IG+MHNR RM A FL KDL Sbjct: 430 PFNLKYESLVWEEDEGLLEKWKQGLTGYPFIDACMRQLKHIGYMHNRGRMCVAMFLTKDL 489 Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425 ++DW++GE++FM L+DGDL SNNGGWQW+ASTG D+ PYFRIF P Q ++ DP G FI Sbjct: 490 MMDWKLGEKWFMENLVDGDLGSNNGGWQWSASTGTDAQPYFRIFAPLSQSEKSDPNGDFI 549 Query: 426 RHWLPELNNVPTQYIHAPHSWLDKNDL-SLNYPLPIVDHKKACHHTLNQYY 475 RHW+PEL ++ + IHAP L + LNYP PIVDH A L +Y Sbjct: 550 RHWVPELKSITGKNIHAPFDSLPPDKFKKLNYPKPIVDHSVARKRALARYK 600 >gi|50659744|gb|AAT80618.1| cryptochrome 2 [Arabidopsis thaliana] Length = 610 Score = 400 bits (1029), Expect = e-109, Method: Composition-based stats. Identities = 135/494 (27%), Positives = 224/494 (45%), Gaps = 26/494 (5%) Query: 10 HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69 +VW R DLRI DN AL AA H V VFI PE+ Q ++ SL + Sbjct: 5 TIVWFRRDLRIEDNPALAAAAHEG--SVFPVFIWCPEEEGQFYPGRASRWWMKQSLAHLS 62 Query: 70 KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH 129 +SL G + N +I + TK+ +N Y+ + RD ++++L Sbjct: 63 QSLKALGSDLTLIKTHN---TISAILDCIRVTGATKVVFNHLYDPVSLVRDHTVKEKLVE 119 Query: 130 RVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188 R I +S++ +L P I + + + + K + +++ + P + +T Sbjct: 120 RGISVQSYNGDLLYEPWEIYCEKGKPFTSFNSYWKKCLDMSIESVMLPPPWRLMPITAAA 179 Query: 189 TPSNIPRFFDYPFQA---------IDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAI 239 + + + + G NA +L +F ++++ Y + Sbjct: 180 EAIWACSIEELGLENEAEKPSNALLTRAWSPGWSNADKLLNEFIEKQLIDYAKNSKKVVG 239 Query: 240 QGTSQLSPYLSIGVLSPRQCWNRLKEEF----VDLLIKPKSGAFSWLNELIWREFYRHLM 295 TS LSPYL G +S R + + + D + + A +L + RE+ R++ Sbjct: 240 NSTSLLSPYLHFGEISVRHVFQCARMKQIIWARDKNSEGEESADLFLRGIGLREYSRYIC 299 Query: 296 AFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRM 355 +P + + W+ D +AW+QG TG+P++DA MR+L GWMHNR+R+ Sbjct: 300 FNFP-FTHEQSLLSHLRFFPWDADVDKFKAWRQGRTGYPLVDAGMRELWATGWMHNRIRV 358 Query: 356 ITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQG 415 I +SF +K LL+ W+ G +YF LLD DL + GWQ+ + + D R+ NP +QG Sbjct: 359 IVSSFAMKFLLLPWKWGMKYFWDTLLDADLECDILGWQYISGSIPDGHELDRLDNPALQG 418 Query: 416 KRFDPQGTFIRHWLPELNNVPTQYIHAPHSW------LDKNDLSLNYPLPIVDHKKACHH 469 ++DP+G +IR WLPEL +PT++IH P +L NY PIVD A Sbjct: 419 AKYDPEGEYIRQWLPELARLPTEWIHHPWDAPLTVLKASGVELGTNYAKPIVDIDIAREL 478 Query: 470 TLNQYYAAKKQSLL 483 ++ ++ Sbjct: 479 LAKAISRTREAQIM 492 >gi|47096881|ref|ZP_00234460.1| deoxyribodipyrimidine photolyase [Listeria monocytogenes str. 1/2a F6854] gi|254900179|ref|ZP_05260103.1| hypothetical protein LmonJ_10210 [Listeria monocytogenes J0161] gi|254911267|ref|ZP_05261279.1| deoxyribodipyrimidine photolyase [Listeria monocytogenes J2818] gi|254935594|ref|ZP_05267291.1| deoxyribodipyrimidine photolyase [Listeria monocytogenes F6900] gi|47014746|gb|EAL05700.1| deoxyribodipyrimidine photolyase [Listeria monocytogenes str. 1/2a F6854] gi|258608175|gb|EEW20783.1| deoxyribodipyrimidine photolyase [Listeria monocytogenes F6900] gi|293589198|gb|EFF97532.1| deoxyribodipyrimidine photolyase [Listeria monocytogenes J2818] Length = 467 Score = 400 bits (1029), Expect = e-109, Method: Composition-based stats. Identities = 167/480 (34%), Positives = 242/480 (50%), Gaps = 27/480 (5%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 ++W R DLR++DNKALY AC D ++ +F P Q+ + +AS+ Sbjct: 2 TSVMWFRRDLRVSDNKALYHACKEDD--LLLLFQVNPAQFIT---GSPSHQAFFASVAHF 56 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQ-RVTKLFYNRQYEINEVRRDKLLEKRL 127 ++ K + Q F + +E L K+++NR RD+ + Sbjct: 57 KQE-VDKTALLQIM----FGEPVECLKQLKETLPSWDKVYFNRDETGYGAERDEAAKTFF 111 Query: 128 QHR-VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 + + ++F DS L + + YK++TP+ K + + + + Sbjct: 112 DEQEIEVQAFHDSYLHSAEEVKKSPTEYYKIFTPYYKKWREEIKETPFKVTLKADNIRKE 171 Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246 + P +F + P+ GE+ A L F K V Y + RD P + TS LS Sbjct: 172 NLFPKYEEQFAEMTCDL--PILDSGEKTANTRLANFIKHDVADYDKARDFPELDKTSHLS 229 Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP 306 YL G +S R W L+E + G + EL WR+FY + +P+ +P Sbjct: 230 RYLRTGEISVRTIWQALQE------NEATEGRAIFEKELCWRDFYNMIYVSFPNQ-KNEP 282 Query: 307 FIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLL 366 IEW + +AW+ G TGFP++DAAMRQL GWMHNRLRM+TASFL KDLL Sbjct: 283 IQENYRFIEWENNREFFKAWQDGKTGFPLVDAAMRQLKETGWMHNRLRMVTASFLTKDLL 342 Query: 367 VDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIR 426 +DWR GE+YF L+D D ASN GGWQWAASTG D+VPYFRIFNPT Q ++FDP G FIR Sbjct: 343 IDWRFGEKYFQQMLIDYDPASNIGGWQWAASTGTDAVPYFRIFNPTTQSQKFDPTGKFIR 402 Query: 427 HWLPELNNVPTQYIHAPHSWLDKND------LSLNYPLPIVDHKKACHHTLNQYYAAKKQ 480 ++ EL N+P +YIH P + L +YP P++DHK+ + +Y +K+ Sbjct: 403 KYVKELANLPDKYIHQPEKMSEIEQKEYGLLLGKDYPFPLIDHKERRKLAIARYEFSKEH 462 >gi|171319558|ref|ZP_02908656.1| Deoxyribodipyrimidine photo-lyase [Burkholderia ambifaria MEX-5] gi|171095203|gb|EDT40197.1| Deoxyribodipyrimidine photo-lyase [Burkholderia ambifaria MEX-5] Length = 500 Score = 400 bits (1029), Expect = e-109, Method: Composition-based stats. Identities = 159/498 (31%), Positives = 244/498 (48%), Gaps = 23/498 (4%) Query: 1 MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHF 60 M A ++++ +VW R+DLR+TD AL A S ++ V++ + + + Sbjct: 1 MSAKSSVAPAVVWFRDDLRVTDQPALMRAVA-SGRPLVCVYVDDTGEGAGRALGGAARWW 59 Query: 61 IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120 ++ SL + +L++ G + D+ ++ +++NR+Y + D Sbjct: 60 LHGSLATLDAALARHGGRLLLLRG----DARREIERVVHDTGAAAVYWNRRYAQPQRDAD 115 Query: 121 KLLEKRLQ-HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPV 179 L+ L+ H + +S + S+L P ++ A ++V+T + +A+ ++ A P Sbjct: 116 AALKASLKAHGLEVESSNGSLLNEPWEVMTGAGTPFQVFTAYWRAVRRDRTVAAPLPAPE 175 Query: 180 PAIRLTGPVTPSNIPRFFD-YPFQAIDPMFPIG---------EQNALHILRKFCKEKVYY 229 P D + P + G E A L F + Sbjct: 176 RIAFHPWPAGVRERALALDTLALRPHAPDWAGGLRDAWPAPDEAGAHARLDAFVHASLAG 235 Query: 230 YVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWRE 289 Y + RD P TS+LSP+L G +SPRQ W+ ++ +GA +L+EL WRE Sbjct: 236 YADTRDRPGEPATSRLSPFLRFGNVSPRQVWHAVQGVAQAGGAACAAGAEKFLSELGWRE 295 Query: 290 FYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWM 349 F L+ +P++ F + I W D L+AW++G TG+P++DA MR+L T GWM Sbjct: 296 FSHVLLYHFPALATDN-FRAQFDAIPWRDDPAALRAWQRGLTGYPLVDAGMRELWTTGWM 354 Query: 350 HNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIF 409 HNR+RM+ ASFLVK LL+DWR GE +F L+D D A+N WQW A G D+ PYFRIF Sbjct: 355 HNRVRMVVASFLVKHLLIDWRAGERWFHDTLVDADAANNPANWQWVAGCGADAAPYFRIF 414 Query: 410 NPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKN------DLSLNYPLPIVDH 463 NP QG++FDPQG ++R W+PEL + IHAP L L+YP PIVDH Sbjct: 415 NPVAQGRKFDPQGAYVRRWVPELAGLDAAAIHAPWEASAAQLAAAGVRLGLDYPAPIVDH 474 Query: 464 KKACHHTLNQYYAAKKQS 481 A L+ K S Sbjct: 475 DGARRRALDALATLPKPS 492 >gi|166007537|gb|ABY77602.1| At1g04400 [Arabidopsis thaliana] gi|166007541|gb|ABY77604.1| At1g04400 [Arabidopsis thaliana] gi|166007543|gb|ABY77605.1| At1g04400 [Arabidopsis thaliana] gi|166007571|gb|ABY77619.1| At1g04400 [Arabidopsis thaliana] gi|166007581|gb|ABY77624.1| At1g04400 [Arabidopsis thaliana] gi|166007583|gb|ABY77625.1| At1g04400 [Arabidopsis thaliana] gi|166007587|gb|ABY77627.1| At1g04400 [Arabidopsis thaliana] gi|166007593|gb|ABY77630.1| At1g04400 [Arabidopsis thaliana] gi|166007595|gb|ABY77631.1| At1g04400 [Arabidopsis thaliana] Length = 612 Score = 400 bits (1029), Expect = e-109, Method: Composition-based stats. Identities = 136/494 (27%), Positives = 223/494 (45%), Gaps = 26/494 (5%) Query: 10 HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69 +VW R DLRI DN AL AA H V VFI PE+ Q ++ SL + Sbjct: 7 TIVWFRRDLRIEDNPALAAAAHEG--SVFPVFIWCPEEEGQFYPGRASRWWMKQSLAHLS 64 Query: 70 KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH 129 +SL G + N +I + TK+ +N Y+ + RD ++++L Sbjct: 65 QSLKALGSDLTLIKTHN---TISAILDCIRVTGATKVVFNHLYDPVSLVRDHTVKEKLVE 121 Query: 130 RVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188 R I S++ +L P I + + + + K + +++ + P + +T Sbjct: 122 RGISVSSYNGDLLYEPWEIYCEKGKPFTSFNSYWKKCLDMSIESVMLPPPWRLMPITAAA 181 Query: 189 TPSNIPRFFDYPFQA---------IDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAI 239 + + + + G NA +L +F ++++ Y + Sbjct: 182 EAIWACSIEELGLENEAEKPSNALLTRAWSPGWSNADKLLNEFIEKQLIDYAKNSKKVVG 241 Query: 240 QGTSQLSPYLSIGVLSPRQCWNRLKEEF----VDLLIKPKSGAFSWLNELIWREFYRHLM 295 TS LSPYL G +S R + + + D + + A +L + RE+ R++ Sbjct: 242 NSTSLLSPYLHFGEISVRHVFQCARMKQIIWARDKNSEGEESADLFLRGIGLREYSRYIC 301 Query: 296 AFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRM 355 +P + + W+ D +AW+QG TG+P++DA MR+L GWMHNR+R+ Sbjct: 302 FNFP-FTHEQSLLSHLRFFPWDADVDKFKAWRQGRTGYPLVDAGMRELWATGWMHNRIRV 360 Query: 356 ITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQG 415 I +SF VK LL+ W+ G +YF LLD DL + GWQ+ + + D R+ NP +QG Sbjct: 361 IVSSFAVKFLLLPWKWGMKYFWDTLLDADLECDILGWQYISGSIPDGHELDRLDNPALQG 420 Query: 416 KRFDPQGTFIRHWLPELNNVPTQYIHAPHSW------LDKNDLSLNYPLPIVDHKKACHH 469 ++DP+G +IR WLPEL +PT++IH P +L NY PIVD A Sbjct: 421 AKYDPEGEYIRQWLPELARLPTEWIHHPWDAPLTVLKASGVELGTNYAKPIVDIDTAREL 480 Query: 470 TLNQYYAAKKQSLL 483 ++ ++ Sbjct: 481 LAKAISRTREAQIM 494 >gi|114321405|ref|YP_743088.1| deoxyribodipyrimidine photo-lyase type I [Alkalilimnicola ehrlichii MLHE-1] gi|114227799|gb|ABI57598.1| deoxyribodipyrimidine photo-lyase type I [Alkalilimnicola ehrlichii MLHE-1] Length = 479 Score = 400 bits (1029), Expect = e-109, Method: Composition-based stats. Identities = 173/482 (35%), Positives = 249/482 (51%), Gaps = 21/482 (4%) Query: 10 HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69 LVWLR DLR+TDN AL A VIAV++ PE+ Q+ A +++ SL + Sbjct: 5 TLVWLRRDLRLTDNPALDQAARRG-GPVIAVYLHAPEETPQYPPGAASHWYLHHSLKALG 63 Query: 70 KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ- 128 +L+Q GI + ++ L + +++NR YE + V RD+ +++ L+ Sbjct: 64 PALAQAGIPLVLRRGP----ALATLRALIRATGAGAVYWNRLYEPDAVARDRTVKQALRT 119 Query: 129 HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188 + C+SF ++L P ++ N A + Y+ +TPF +A + A P R V Sbjct: 120 EGLDCRSFPTALLHEPWAVRNQADRPYRAFTPFWRACRRQPPPAAPLPAPDLRDRPVPAV 179 Query: 189 TPSNIPRFFDYPFQAIDP----MFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244 ++ P D + GE AL L F +++ Y + RD PA GTS Sbjct: 180 EGLDLAALGLLPRTPWDTGLRNTWQAGESAALARLEAFAADRLARYAQDRDRPAEPGTSG 239 Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304 LSP L G LSPRQ W ++ + P+ ++L+EL WREF HL+ +P + Sbjct: 240 LSPALHFGELSPRQVWWQVMAAREAGV--PEDACETFLSELGWREFAHHLLWSHPDLG-D 296 Query: 305 KPFIPWTEKIEWNKDSH--LLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLV 362 P W D L AW+ G TG P++DA M +L GWMHNR+RM+T SFLV Sbjct: 297 APVDDRFGAFPWRPDPGDGWLHAWQAGRTGIPLVDAGMHELWQTGWMHNRVRMVTGSFLV 356 Query: 363 KDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQG 422 K L + W+ GE +F L+D D ASN GWQW A G D+ PYFRIFNP QG+RFDPQG Sbjct: 357 KHLRLPWQRGERWFRDTLVDWDAASNAMGWQWVAGCGADAAPYFRIFNPVRQGERFDPQG 416 Query: 423 TFIRHWLPELNNVPTQYIHAPHSWLDK------NDLSLNYPLPIVDHKKACHHTLNQYYA 476 ++R WLP L N+P +YIHAP + + L +YP P++D + L+ + A Sbjct: 417 RYVRRWLPALANLPDKYIHAPWTAPEAVLRRAGVTLGSDYPCPLIDLRLGREQALSAFQA 476 Query: 477 AK 478 K Sbjct: 477 IK 478 >gi|134095905|ref|YP_001100980.1| deoxyribodipyrimidine photolyase [Herminiimonas arsenicoxydans] gi|133739808|emb|CAL62859.1| Deoxyribodipyrimidine photolyase [Herminiimonas arsenicoxydans] Length = 493 Score = 400 bits (1029), Expect = e-109, Method: Composition-based stats. Identities = 177/490 (36%), Positives = 252/490 (51%), Gaps = 29/490 (5%) Query: 10 HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69 LVW R DLR D+ AL+ A S +V VFI + R+ FI+ASLL++ Sbjct: 7 TLVWFRRDLRSVDHAALHHALAQS-RQVYCVFIFDRAILDALPRADRRVEFIHASLLELA 65 Query: 70 KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH 129 ++L G + + ++ V +F N YE + RD + LQ Sbjct: 66 QALRALGGGLIVQHA----WAETAIPELAIELGVDAVFANHDYEPQAITRDAHVAAALQA 121 Query: 130 RV-ICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLV----QADLRSLPVPAIRL 184 +F D V+ +L A + + V+TP++ A ++ L +A LR + A Sbjct: 122 AGRSLHTFKDQVVFEKNEVLTQAEKPFSVFTPYKNAWLKKLYAESNEATLRPYEIDAYAD 181 Query: 185 TG---PVTPSNIPRFFDYPFQAI---DPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPA 238 P + IP D F+ D P G Q A +L F +++ Y + RD PA Sbjct: 182 RFVNLPESKFPIPSLTDLGFEKTNLPDLNIPTGMQGAQDLLDAF-ADRMQRYDQTRDFPA 240 Query: 239 IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFY 298 ++G S LS ++ G +S R R + +GA WL+EL+WR+FY ++ + Sbjct: 241 LKGPSYLSVHVRFGTVSIRALARRALDAMR--TGTGGNGAAVWLSELVWRDFYFMILFQH 298 Query: 299 PSVCMGKPFIPWTEKIEW---NKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRM 355 P V F + I W + L QAW G TG+P++DAAM QLN G+MHNRLRM Sbjct: 299 PHVVDH-AFKADYDAITWESGDHARRLFQAWCDGQTGYPLVDAAMAQLNQTGYMHNRLRM 357 Query: 356 ITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQG 415 +TASFL+KDL +DWR GE YF +L D DLA+NNGGWQWA+S+G D+ PYFRIFNP Q Sbjct: 358 VTASFLIKDLGIDWRWGEHYFAEKLNDFDLAANNGGWQWASSSGCDAQPYFRIFNPITQS 417 Query: 416 KRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKN------DLSLNYPLPIVDHKKACHH 469 ++FD QG FIR +LP+L + ++IHAP ++ NYP P+V H +A Sbjct: 418 EKFDQQGKFIRRYLPQLAKLSDRHIHAPWCAPALELRMAGVEIGNNYPGPLVQHDEARAR 477 Query: 470 TLNQYYAAKK 479 TL +Y KK Sbjct: 478 TLQRYAVVKK 487 >gi|167998114|ref|XP_001751763.1| cryptochrome 1a [Physcomitrella patens subsp. patens] gi|5731739|dbj|BAA83338.1| blue light photoreceptor cryptochrome [Physcomitrella patens] gi|162696861|gb|EDQ83198.1| cryptochrome 1a [Physcomitrella patens subsp. patens] Length = 727 Score = 400 bits (1029), Expect = e-109, Method: Composition-based stats. Identities = 145/505 (28%), Positives = 233/505 (46%), Gaps = 37/505 (7%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 + +VW R DLR+ DN AL AA V+ VF+ +P + Q ++ SL Sbjct: 2 AACTIVWFRRDLRLEDNPALIAAARAG--TVVPVFVWSPAEDGQFHPGRVSRWWLKQSLT 59 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 ++ SL + G + D++ L T++FYN Y+ + RD +++ Sbjct: 60 HLELSLKKLGSPLILRKSP---DTLSVLLEIAEATGATQVFYNHLYDPVSLVRDHRVKQG 116 Query: 127 LQHRVIC-KSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185 L R I +F+ +L P + + Q + VY F K + + + LP RLT Sbjct: 117 LSQRGIVVHTFNGDLLYEPWEVYDEEGQAFTVYEAFWKKCMSMPFEPEAPLLP--PRRLT 174 Query: 186 GPVTPSNIPRFFDYPFQA---------IDPMFPIGEQNALHILRKFCKEKVYYYVEQR-- 234 GP+ + + + + G A L F + + Y R Sbjct: 175 GPIGKIVGCNAEELGLEDEFEKSSNALLARAWCPGWGFANKSLDSFLRSPLIDYARDRQK 234 Query: 235 -DIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFS----WLNELIWRE 289 D + TS LSP+L G LS R+ ++ +++ + + +G + +L L +RE Sbjct: 235 ADGASGTPTSLLSPHLHFGELSVRKIFHEVRKRQITWAREGNAGGEASVNMFLRALGFRE 294 Query: 290 FYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWM 349 + R+L +P + + + W D +AW+QG TG+P++DA MR+L GW Sbjct: 295 YSRYLSFHFP-FTHERSLLANLKSFPWRADEGYFKAWRQGRTGYPLVDAGMRELWATGWA 353 Query: 350 HNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIF 409 HNR+R++ ASF VK L + WR G +YF LLD DL + GWQ+ + + D RI Sbjct: 354 HNRIRVVVASFSVKFLQLPWRWGMKYFWDVLLDADLECDVLGWQYISGSLPDGHELDRIE 413 Query: 410 NPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKN------DLSLNYPLPIVDH 463 NP ++G RFDP G ++R W+PEL +P +++H P +L NYP PIV+ Sbjct: 414 NPEVEGYRFDPDGDYVRRWIPELARLPNEWVHHPWDAPPSALRAAGVELGTNYPRPIVEI 473 Query: 464 KKACHH---TLNQYY---AAKKQSL 482 A +L + + AA K +L Sbjct: 474 GAARERLQASLAEMWERDAAMKAAL 498 >gi|308049190|ref|YP_003912756.1| deoxyribodipyrimidine photo-lyase [Ferrimonas balearica DSM 9799] gi|307631380|gb|ADN75682.1| Deoxyribodipyrimidine photo-lyase [Ferrimonas balearica DSM 9799] Length = 456 Score = 400 bits (1029), Expect = e-109, Method: Composition-based stats. Identities = 184/468 (39%), Positives = 267/468 (57%), Gaps = 21/468 (4%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 + LVW R+DLR+ D+ AL+AA + V+A++IA+P+QW+ H R++ + YA++ + Sbjct: 1 MQLVWFRDDLRVHDHPALFAAAQRGE-PVVALYIASPQQWQLHDCGPRKAQWHYANVQAL 59 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128 +++L+ GI +C +FDD L + C + + + + +NE ++ L +L Sbjct: 60 REALAGLGIPLTVWRCEHFDDIPARLGALCNEAGIGAVHCHHGLGVNERALEQKLADQLP 119 Query: 129 HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188 V + D+ L+ +I +Y+V+TPF + Q + P P Sbjct: 120 --VPLHRYADANLVDYSAITTGQGGLYQVFTPFARRCRQWMAPPQPLPAPEPQAAQPPLQ 177 Query: 189 TPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPY 248 + +D ++P GEQ A L +FC++++ Y + RD PA GTS LSPY Sbjct: 178 ADDAW-------SETVDLLWPAGEQAAARTLARFCQQRLSAYHDDRDWPAKAGTSALSPY 230 Query: 249 LSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFI 308 + GVLSPRQ + L ++ GA SWLNEL+WREFYR+L+ + + Sbjct: 231 FAAGVLSPRQAAHALSQQ------ADGEGAQSWLNELLWREFYRYLLYHHARLSRHDALF 284 Query: 309 PWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVD 368 P E W + L+ W+QG TGFP++DA MRQLN GWMHNR+RM+ ASFLVKDL +D Sbjct: 285 PAKEA-RWEANDEWLRRWQQGRTGFPLVDAGMRQLNATGWMHNRVRMLCASFLVKDLHID 343 Query: 369 WRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHW 428 WR+GE YFM QL+DGDLASNNGGWQWAA G D+ PYFR F+P Q +RFDP G +IR W Sbjct: 344 WRLGEAYFMQQLVDGDLASNNGGWQWAAGCGADAAPYFRSFSPYRQSERFDPDGDYIRQW 403 Query: 429 LPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYA 476 +PEL VP + +H +L L+ +YP P+VDHK Q+ Sbjct: 404 VPELAEVPARQLHKGGPFL----LAPDYPAPMVDHKAQTARFTAQFKQ 447 >gi|325103845|ref|YP_004273499.1| Deoxyribodipyrimidine photo-lyase [Pedobacter saltans DSM 12145] gi|324972693|gb|ADY51677.1| Deoxyribodipyrimidine photo-lyase [Pedobacter saltans DSM 12145] Length = 448 Score = 400 bits (1029), Expect = e-109, Method: Composition-based stats. Identities = 166/477 (34%), Positives = 240/477 (50%), Gaps = 50/477 (10%) Query: 5 TAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQ-HGISARQSHFIYA 63 T + LVWLR DLR+ D ALY A N + V+ +FI R+ FI+ Sbjct: 15 TMKQISLVWLRRDLRLDDQAALYHALKN-ETNVLPLFIFDTTILNLLPNKFDRRVDFIHQ 73 Query: 64 SLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLL 123 L ++K L + D I+ + + ++ NR YE + RD+ + Sbjct: 74 VLSDMKKELDAINSSLLVE----YGDPIDVFSELIDRFTIKAIYTNRDYEPTAIARDESV 129 Query: 124 EKRLQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAI 182 +K ++ + I K+F D + I+ Y ++TP+ + L L+S P Sbjct: 130 KKLVESKGIAFKTFKDQCIFEQSEIVKDDGSPYSIFTPYSRKWKSKLNDFYLKSYPCKKY 189 Query: 183 RLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFC--KEKVYYYVEQRDIPAIQ 240 + + D+ F ++ + G + KF +E V +Y + RD PA++ Sbjct: 190 -------YHHFYQGDDFKFPDLESL---GFSKTDIVYNKFVLSREIVRHYDKTRDFPALK 239 Query: 241 GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPS 300 GTS+ S +L G +S R+ + ++LNELIWR+FY ++ YP Sbjct: 240 GTSRASMHLRFGTISIRKLARYALDYN-----------ETYLNELIWRDFYMMILYHYPK 288 Query: 301 VCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASF 360 + F +KI W + +AW +G TG+PI+DA MR+LNT G+MHNR+RMI ASF Sbjct: 289 IVRH-SFKADYDKIPWLNNEKDFKAWCEGKTGYPIVDAGMRELNTTGFMHNRVRMIVASF 347 Query: 361 LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDP 420 L K LL+DWR GE YF +L D DL++NNGGWQWAAS+G D+VPYFRIFNP Q K+FDP Sbjct: 348 LTKHLLIDWRWGEAYFAEKLDDYDLSANNGGWQWAASSGCDAVPYFRIFNPEEQTKKFDP 407 Query: 421 QGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477 +IR W+PEL+ SL+YP PIV+HK A LN Y A Sbjct: 408 NRAYIRKWIPELD-------------------SLDYPKPIVEHKFARERALNVYKKA 445 >gi|50659704|gb|AAT80598.1| cryptochrome 2 [Arabidopsis thaliana] gi|50659706|gb|AAT80599.1| cryptochrome 2 [Arabidopsis thaliana] gi|50659708|gb|AAT80600.1| cryptochrome 2 [Arabidopsis thaliana] gi|50659710|gb|AAT80601.1| cryptochrome 2 [Arabidopsis thaliana] gi|50659712|gb|AAT80602.1| cryptochrome 2 [Arabidopsis thaliana] gi|50659714|gb|AAT80603.1| cryptochrome 2 [Arabidopsis thaliana] gi|50659716|gb|AAT80604.1| cryptochrome 2 [Arabidopsis thaliana] gi|50659718|gb|AAT80605.1| cryptochrome 2 [Arabidopsis thaliana] gi|50659720|gb|AAT80606.1| cryptochrome 2 [Arabidopsis thaliana] Length = 610 Score = 400 bits (1029), Expect = e-109, Method: Composition-based stats. Identities = 136/494 (27%), Positives = 223/494 (45%), Gaps = 26/494 (5%) Query: 10 HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69 +VW R DLRI DN AL AA H V VFI PE+ Q ++ SL + Sbjct: 5 TIVWFRRDLRIEDNPALAAAAHEG--SVFPVFIWCPEEEGQFYPGRASRWWMKQSLAHLS 62 Query: 70 KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH 129 +SL G + N +I + TK+ +N Y+ + RD ++++L Sbjct: 63 QSLKALGSDLTLIKTHN---TISAILDCIRVTGATKVVFNHLYDPVSLVRDHTVKEKLVE 119 Query: 130 RVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188 R I S++ +L P I + + + + K + +++ + P + +T Sbjct: 120 RGISVSSYNGDLLYEPWEIYCEKGKPFTSFNSYWKKCLDMSIESVMLPPPWRLMPITAAA 179 Query: 189 TPSNIPRFFDYPFQA---------IDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAI 239 + + + + G NA +L +F ++++ Y + Sbjct: 180 EAIWACSIEELGLENEAEKPSNALLTRAWSPGWSNADKLLNEFIEKQLIDYAKNSKKVVG 239 Query: 240 QGTSQLSPYLSIGVLSPRQCWNRLKEEF----VDLLIKPKSGAFSWLNELIWREFYRHLM 295 TS LSPYL G +S R + + + D + + A +L + RE+ R++ Sbjct: 240 NSTSLLSPYLHFGEISVRHVFQCARMKQIIWARDKNSEGEESADLFLRGIGLREYSRYIC 299 Query: 296 AFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRM 355 +P + + W+ D +AW+QG TG+P++DA MR+L GWMHNR+R+ Sbjct: 300 FNFP-FTHEQSLLSHLRFFPWDADVDKFKAWRQGRTGYPLVDAGMRELWATGWMHNRIRV 358 Query: 356 ITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQG 415 I +SF VK LL+ W+ G +YF LLD DL + GWQ+ + + D R+ NP +QG Sbjct: 359 IVSSFAVKFLLLPWKWGMKYFWDTLLDADLECDILGWQYISGSIPDGHELDRLDNPALQG 418 Query: 416 KRFDPQGTFIRHWLPELNNVPTQYIHAPHSW------LDKNDLSLNYPLPIVDHKKACHH 469 ++DP+G +IR WLPEL +PT++IH P +L NY PIVD A Sbjct: 419 AKYDPEGEYIRQWLPELARLPTEWIHHPWDAPLTVLKASGVELGTNYAKPIVDIDTAREL 478 Query: 470 TLNQYYAAKKQSLL 483 ++ ++ Sbjct: 479 LAKAISRTREAQIM 492 >gi|16802631|ref|NP_464116.1| hypothetical protein lmo0588 [Listeria monocytogenes EGD-e] gi|224502111|ref|ZP_03670418.1| hypothetical protein LmonFR_06272 [Listeria monocytogenes FSL R2-561] gi|16409964|emb|CAC98667.1| lmo0588 [Listeria monocytogenes EGD-e] Length = 467 Score = 400 bits (1028), Expect = e-109, Method: Composition-based stats. Identities = 166/480 (34%), Positives = 242/480 (50%), Gaps = 27/480 (5%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 ++W R DLR+ DNKALY AC D ++ +F P Q+ + +AS+ Sbjct: 2 TSVMWFRRDLRVNDNKALYHACKEDD--LLLLFQVNPAQFIT---GSPSHQAFFASVAHF 56 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQ-RVTKLFYNRQYEINEVRRDKLLEKRL 127 ++ K + Q F + +E L K+++NR RD+ + Sbjct: 57 KQE-VDKTALLQIM----FGEPVECLKQLKETLPSWDKVYFNRDETGYGAERDEAAKTFF 111 Query: 128 QHR-VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 + + ++F DS L + + YK++TP+ K + + + + Sbjct: 112 DEQEIEVQAFHDSYLHSAEEVKKSPTEYYKIFTPYYKKWREEIKETPFKVTLKADNIRKE 171 Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246 + P +F + P+ GE+ A L F K V Y + RD P + TS LS Sbjct: 172 NLFPKYEEQFAEMTCDL--PILDSGEKTANTRLANFIKHDVADYDKARDFPELDKTSHLS 229 Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP 306 YL G +S R W L+E + G + EL WR+FY + +P+ +P Sbjct: 230 RYLRTGEISVRTIWQALQE------NEATEGRAIFEKELCWRDFYNMIYVSFPNQ-KNEP 282 Query: 307 FIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLL 366 IEW + +AW++G TGFP++DAAMRQL GWMHNRLRM+TASFL KDLL Sbjct: 283 IQENYRFIEWENNREFFKAWQEGKTGFPLVDAAMRQLKETGWMHNRLRMVTASFLTKDLL 342 Query: 367 VDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIR 426 +DWR GE+YF L+D D ASN GGWQWAASTG D+VPYFRIFNPT Q ++FDP G FIR Sbjct: 343 IDWRFGEKYFQQMLIDYDPASNIGGWQWAASTGTDAVPYFRIFNPTTQSQKFDPTGKFIR 402 Query: 427 HWLPELNNVPTQYIHAPHSWLDKND------LSLNYPLPIVDHKKACHHTLNQYYAAKKQ 480 ++ EL N+P ++IH P + L +YP P++DHK+ + +Y +K+ Sbjct: 403 KYVKELANLPDKFIHQPEKMSEIEQKEYGLLLGKDYPFPLIDHKERRKLAIARYEFSKEH 462 >gi|309780777|ref|ZP_07675518.1| deoxyribodipyrimidine photo-lyase (DNA photolyase)(Photoreactivating enzyme) [Ralstonia sp. 5_7_47FAA] gi|308920459|gb|EFP66115.1| deoxyribodipyrimidine photo-lyase (DNA photolyase)(Photoreactivating enzyme) [Ralstonia sp. 5_7_47FAA] Length = 518 Score = 400 bits (1028), Expect = e-109, Method: Composition-based stats. Identities = 173/490 (35%), Positives = 248/490 (50%), Gaps = 31/490 (6%) Query: 10 HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGI----SARQSHFIYASL 65 LVW R DLR D+ AL+ A + +V VF+ + S R+ FI AS+ Sbjct: 20 GLVWFRRDLRHVDHAALHYALRHC-REVYCVFVFDRDILDALLARGLKSDRRVEFIRASI 78 Query: 66 LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125 +++ +L + G D + Q V +F N E + RD+ + K Sbjct: 79 EELRGALRETGGDLIVVH----DHPRHAIPEIARQLNVEAVFANHDEEPSAQARDEAVRK 134 Query: 126 RLQHR-VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL 184 L + F D V+ ILN + Y V+TP++ A + L DLR+ P Sbjct: 135 ALAQQPCAWFDFKDQVIFERDEILNGQGKPYGVFTPYKNAWLAALTPFDLRAYPTEPYFG 194 Query: 185 TGPVTPSNI----PRFFDYPFQA---IDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIP 237 P + P F + P G +L +F +E++ Y +RD P Sbjct: 195 ALAKPPEALAHPTPALEAMGFARTNLSEIALPSGMSGGQTLLDEF-EERMDDYHARRDFP 253 Query: 238 AIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAF 297 A++G S LS +L G +S R R +++ GA +WL+EL+WR+FY ++ Sbjct: 254 AVRGPSYLSTHLRFGTVSIRTLAARAHA----SMLRGSRGAATWLSELVWRDFYFMILHH 309 Query: 298 YPSVCMGKPFIPWTEKIEW---NKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLR 354 P + G F P ++I W + +AWK TG+P++DAAM Q+ G+MHNRLR Sbjct: 310 RPDLADGAAFHPEFDRIRWVDGDTGDARFEAWKAARTGYPLVDAAMLQIFQSGYMHNRLR 369 Query: 355 MITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQ 414 M+ ASFL+KDL +DWR GE+YF L D D ++NNGGWQWAAS+G D+ P+FRIFNP Q Sbjct: 370 MVAASFLIKDLGIDWRRGEQYFADVLNDFDFSANNGGWQWAASSGCDAQPWFRIFNPVTQ 429 Query: 415 GKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWL------DKNDLSLNYPLPIVDHKKACH 468 ++FDPQG FIR +LP+L +P +YIHAP + L YPLPIVDH A Sbjct: 430 SEKFDPQGRFIRKYLPQLAKLPDKYIHAPWTAPANVLKEASVVLGETYPLPIVDHAAARA 489 Query: 469 HTLNQYYAAK 478 TL++Y K Sbjct: 490 ATLDRYAVTK 499 >gi|319762589|ref|YP_004126526.1| deoxyribodipyrimidine photo-lyase [Alicycliphilus denitrificans BC] gi|317117150|gb|ADU99638.1| Deoxyribodipyrimidine photo-lyase [Alicycliphilus denitrificans BC] Length = 491 Score = 400 bits (1028), Expect = e-109, Method: Composition-based stats. Identities = 180/490 (36%), Positives = 257/490 (52%), Gaps = 31/490 (6%) Query: 6 AMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGI-SARQSHFIYAS 64 A + LVWLR DLR D+ ALY A +V F+ + S R+ FI+AS Sbjct: 5 ATASALVWLRRDLRCDDHAALYHALRRF-GRVYCAFVFDTDILDALPTRSDRRVEFIHAS 63 Query: 65 LLQVQKSLSQK-------GIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEV 117 +L++ + L++ G + E + V ++ NR YE + Sbjct: 64 VLELHQGLAELAARSGAPGGGLIVRHGP----APECIVRLARSLGVQEVLANRDYEPQAI 119 Query: 118 RRDKLLEKRLQHRVICKS-FDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRS 176 RD+ + + LQ I S + D LL +L + Y V+TP+R+A +Q L L Sbjct: 120 ERDRRVARALQAAGIAFSDYKDQALLDRDEVLTRQGRPYGVFTPYRRAWLQRLDAFQLTP 179 Query: 177 LPV--PAIRLTGPVTPSNIPRFFDYPFQAIDPM---FPIGEQNALHILRKFCKEKVYYYV 231 PV A L P +P + F + P G + A +L+ F ++ Y Sbjct: 180 YPVASHARHLAAPPAGECLPTLQELGFARTNLHELPLPTGMRGAQQLLQDFMP-RMAAYH 238 Query: 232 EQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFY 291 E RD P +G S LS +L G +S R +L + GA +WL+EL WR+FY Sbjct: 239 EARDYPGRKGVSYLSVHLRFGTVSIR----QLAALAAAQAAQGCEGAQAWLSELAWRDFY 294 Query: 292 RHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHN 351 ++ +P V + F P ++++W+ L QAW TG+P++DAAMRQL+ G+MHN Sbjct: 295 FMILWHHPQVAT-QSFKPVYDRVQWDDAPELWQAWCGARTGYPLVDAAMRQLHQTGYMHN 353 Query: 352 RLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNP 411 RLRM+ ASFL KDL +DWR GE +F + L D DLA+NNGGWQWAASTG D+ P+FRIFNP Sbjct: 354 RLRMVVASFLTKDLGLDWRRGERHFAAHLNDYDLAANNGGWQWAASTGCDAQPWFRIFNP 413 Query: 412 TIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKN------DLSLNYPLPIVDHKK 465 Q ++FDPQG FIR +LPEL VP +IH P + L ++YPLP+VDH + Sbjct: 414 VTQSQKFDPQGRFIRCYLPELARVPDAHIHFPAAMGPLELAACGLRLGVDYPLPVVDHAR 473 Query: 466 ACHHTLNQYY 475 A TL +++ Sbjct: 474 ARERTLMRFH 483 >gi|1468977|gb|AAB04997.1| AT-PHH1 [Arabidopsis thaliana] Length = 612 Score = 400 bits (1028), Expect = e-109, Method: Composition-based stats. Identities = 136/494 (27%), Positives = 223/494 (45%), Gaps = 26/494 (5%) Query: 10 HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69 +VW R DLRI DN AL AA H V VFI PE+ Q ++ SL + Sbjct: 7 TIVWFRRDLRIEDNPALAAAAHEG--SVFPVFIWCPEEEGQFYPGRASRWWMKQSLAHLS 64 Query: 70 KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH 129 +SL G Q N +I + TK+ +N Y+ + RD ++++L Sbjct: 65 QSLKALGSDLTLIQTHN---TISAILDCIRVTGPTKVVFNHLYDPVSLVRDHTVKEKLVE 121 Query: 130 RVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188 R I +S++ +L P I + + + + K + +++ + P + +T Sbjct: 122 RGISVQSYNGDLLYEPWEIYCEKGKPFTSFNSYWKKCLDMSIESVMLPPPWRLMPITAAA 181 Query: 189 TPSNIPRFFDYPFQA---------IDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAI 239 + + + + G NA +L +F ++++ Y + Sbjct: 182 EAIWACSIEELGLENEAEKPSNALLTRAWSPGWSNADKLLNEFIEKQLIDYAKNSKKVVG 241 Query: 240 QGTSQLSPYLSIGVLSPRQCWNRLKEEF----VDLLIKPKSGAFSWLNELIWREFYRHLM 295 TS LSPYL G +S R + + + D + + A +L + RE+ R++ Sbjct: 242 NSTSLLSPYLHFGEISVRHVFQCARMKQIIWARDKNSEGEESADLFLRGIGLREYSRYIC 301 Query: 296 AFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRM 355 +P + + W+ D +AW+QG TG+P++DA MR+L GWMHNR+R+ Sbjct: 302 FNFP-FTHEQSLLSHLRFFPWDADVDKFKAWRQGRTGYPLVDAGMRELWATGWMHNRIRV 360 Query: 356 ITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQG 415 I +SF VK LL+ W+ G +YF L D DL + GWQ+ + + D R+ NP +QG Sbjct: 361 IVSSFAVKFLLLPWKWGMKYFWDTLXDADLECDILGWQYISGSIPDGHELDRLDNPALQG 420 Query: 416 KRFDPQGTFIRHWLPELNNVPTQYIHAPHSW------LDKNDLSLNYPLPIVDHKKACHH 469 ++DP+G +IR WLPEL +PT++IH P +L NY PIVD A Sbjct: 421 AKYDPEGEYIRQWLPELARLPTEWIHHPWDAPLTVLKASGVELGTNYAKPIVDIDTAREL 480 Query: 470 TLNQYYAAKKQSLL 483 ++ ++ Sbjct: 481 LAKAISRTREAQIM 494 >gi|254830427|ref|ZP_05235082.1| hypothetical protein Lmon1_03662 [Listeria monocytogenes 10403S] Length = 467 Score = 400 bits (1027), Expect = e-109, Method: Composition-based stats. Identities = 168/480 (35%), Positives = 241/480 (50%), Gaps = 27/480 (5%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 ++W R DLR+ DNKALY AC D ++ +F P Q+ + +AS+ Sbjct: 2 TSVMWFRRDLRVNDNKALYHACKEDD--LLLLFQVNPAQFIT---GSPSHQAFFASVAHF 56 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQ-RVTKLFYNRQYEINEVRRDKLLEKRL 127 ++ K + Q F + +E L K+++NR RD+ + Sbjct: 57 KQE-VDKTALLQIM----FGEPVECLKQLKETLPSWDKVYFNRDETGYGAERDEAAKTFF 111 Query: 128 QHR-VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 + + ++F DS L + + YK++TP+ K + + + + Sbjct: 112 DEQEIEVQAFHDSYLHSAEEVKKSPTEYYKIFTPYYKKWREEIKETPFKVTLKADNIRKE 171 Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246 + P +F + P+ GE+ A L F K V Y + RD P + TS LS Sbjct: 172 NLFPKYEEQFAEMTCDL--PILDSGEKTANTRLANFIKHDVADYDKARDFPELDKTSHLS 229 Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP 306 YL G +S R W L+E + G + EL WR+FY + +P+ +P Sbjct: 230 RYLRTGEISVRTIWQALQE------NEATEGRAIFEKELCWRDFYNMIYVSFPNQ-KNEP 282 Query: 307 FIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLL 366 IEW + +AW+ G TGFP++DAAMRQL GWMHNRLRM+TASFL KDLL Sbjct: 283 IQENYRFIEWENNREFFKAWQDGKTGFPLVDAAMRQLKETGWMHNRLRMVTASFLTKDLL 342 Query: 367 VDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIR 426 +DWR GE+YF L+D D ASN GGWQWAASTG D+VPYFRIFNPT Q ++FDP G FIR Sbjct: 343 IDWRFGEKYFQQMLIDYDSASNIGGWQWAASTGTDAVPYFRIFNPTTQSQKFDPTGKFIR 402 Query: 427 HWLPELNNVPTQYIHAPHSWLDKND------LSLNYPLPIVDHKKACHHTLNQYYAAKKQ 480 ++ EL N+P ++IH P + L +YP PIVDHK+ + +Y +K+ Sbjct: 403 EYVKELANLPDKFIHQPEKMSEIEQKEHGLLLGKDYPFPIVDHKERRKLAIARYEFSKEH 462 >gi|170780895|ref|YP_001709227.1| putative deoxyribodipyrimidine photolyase [Clavibacter michiganensis subsp. sepedonicus] gi|169155463|emb|CAQ00571.1| putative deoxyribodipyrimidine photolyase [Clavibacter michiganensis subsp. sepedonicus] Length = 508 Score = 400 bits (1027), Expect = e-109, Method: Composition-based stats. Identities = 156/501 (31%), Positives = 244/501 (48%), Gaps = 32/501 (6%) Query: 3 ATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIY 62 A A +VWLR+DLR+ DN A++AA + ++ +++ E + +++ Sbjct: 17 ADQAHGPTIVWLRDDLRVADNPAMHAAVERGE-PIVVLYVLDEESAGIRPLGGAARWWLH 75 Query: 63 ASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKL 122 SL ++ +SL G + + + +D + + +NR+Y E+ D Sbjct: 76 MSLSRLGESLRGLGSPLVLRRGK----AADVVDDLVREVGAGAVLWNRRYGGAEIAVDTA 131 Query: 123 LEKRLQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPA 181 ++K L R + +SF S+L+ P +++N + ++VYTPF K P Sbjct: 132 IKKDLGDRGLDVRSFQGSLLVEPWTVVNKQGEPFRVYTPFWKTAQDREEPRKPFPAPD-- 189 Query: 182 IRLTGPVTPSNIPRFFDYPFQAIDPMFP--------IGEQNALHILRKFCKEKVYYYVEQ 233 L P D+ P + GE L L F ++ Y Q Sbjct: 190 -ALEAPRKAPRSDDLDDWGLLPTKPDWAAGLREACDPGEAAGLQRLEDFVHHELEDYAAQ 248 Query: 234 RDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRH 293 RD PA TS+LS YL G +SP Q W+R++ + + A +L+EL WREF H Sbjct: 249 RDEPAAMTTSRLSAYLRWGEVSPFQVWHRVQRTRGKKVGGDEVNATKFLSELGWREFSYH 308 Query: 294 LMAFYPSVCMGKPFIPWTEKIEWNK-DSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNR 352 L+ P + + F+P + W++ L AW++G TG P++DA MR L G +HNR Sbjct: 309 LLYHQPDLAT-RNFVPRFDAFPWDEPRDDTLGAWQRGETGVPLVDAGMRALWKDGHLHNR 367 Query: 353 LRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPT 412 +RM+ ASFL+K+LL+DWR GE++F L+D D A+N WQW A +G D+ PYFR+FNP Sbjct: 368 VRMVVASFLIKNLLIDWRHGEQWFWDTLVDADAANNAASWQWVAGSGADAAPYFRVFNPV 427 Query: 413 IQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWL-------------DKNDLSLNYPLP 459 +QG++FDP G +IR ++PEL + P +H P + YP P Sbjct: 428 LQGQKFDPSGEYIRSYVPELAHAPRDVVHEPWKAQGDLVASAEDDADASADGGLAAYPSP 487 Query: 460 IVDHKKACHHTLNQYYAAKKQ 480 IVD K++ L Y K + Sbjct: 488 IVDLKESRQRALAAYDEIKDR 508 >gi|18026280|gb|AAL16379.1| cryptochrome 2 [Arabidopsis thaliana] Length = 612 Score = 400 bits (1027), Expect = e-109, Method: Composition-based stats. Identities = 136/494 (27%), Positives = 223/494 (45%), Gaps = 26/494 (5%) Query: 10 HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69 +VW R DLRI DN AL AA H V VFI PE+ Q ++ SL + Sbjct: 7 TIVWFRRDLRIEDNPALAAAAHEG--SVFPVFIWCPEEEGQFYPGRASRWWMKQSLAHLS 64 Query: 70 KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH 129 +SL G + N +I + TK+ +N Y+ + RD ++++L Sbjct: 65 QSLKALGSDLTLIKTHN---TISAILDCIRVTGATKVVFNHLYDPVSLVRDHTVKEKLVE 121 Query: 130 RVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188 R I S++ +L P I + + + + K + +++ + P + +T Sbjct: 122 RGISVSSYNGDLLYEPWEIYCEKGKPFTSFNSYWKKCLDMSIESVMLPPPWRLMPITAAA 181 Query: 189 TPSNIPRFFDYPFQA---------IDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAI 239 + + + + G NA +L +F ++++ Y + Sbjct: 182 EAIWACLIEELGLENEAEKPSNALLTRAWSPGWSNADKLLNEFIEKQLIDYAKNSKKVVG 241 Query: 240 QGTSQLSPYLSIGVLSPRQCWNRLKEEF----VDLLIKPKSGAFSWLNELIWREFYRHLM 295 TS LSPYL G +S R + + + D + + A +L + RE+ R++ Sbjct: 242 NSTSLLSPYLHFGEISVRHVFQCARMKQIIWARDKNSEGEESADLFLRGIGLREYSRYIC 301 Query: 296 AFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRM 355 +P + + W+ D +AW+QG TG+P++DA MR+L GWMHNR+R+ Sbjct: 302 FNFP-FTHEQSLLSHLRFFPWDADVDKFKAWRQGRTGYPLVDAGMRELWATGWMHNRIRV 360 Query: 356 ITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQG 415 I +SF VK LL+ W+ G +YF LLD DL + GWQ+ + + D R+ NP +QG Sbjct: 361 IVSSFAVKFLLLPWKWGMKYFWDTLLDADLECDILGWQYISGSIPDGHELDRLDNPALQG 420 Query: 416 KRFDPQGTFIRHWLPELNNVPTQYIHAPHSW------LDKNDLSLNYPLPIVDHKKACHH 469 ++DP+G +IR WLPEL +PT++IH P +L NY PIVD A Sbjct: 421 AKYDPEGEYIRQWLPELARLPTEWIHHPWDAPLTVLKASGVELGTNYAKPIVDIDTAREL 480 Query: 470 TLNQYYAAKKQSLL 483 ++ ++ Sbjct: 481 LAKAISRTREAQIM 494 >gi|148652562|ref|YP_001279655.1| deoxyribodipyrimidine photo-lyase [Psychrobacter sp. PRwf-1] gi|148571646|gb|ABQ93705.1| Deoxyribodipyrimidine photo-lyase type I [Psychrobacter sp. PRwf-1] Length = 550 Score = 400 bits (1027), Expect = e-109, Method: Composition-based stats. Identities = 186/540 (34%), Positives = 271/540 (50%), Gaps = 73/540 (13%) Query: 10 HLVWLRNDLRITDNKALY-------AACHNSDAKVIAVFIATPEQWRQHGISARQSHFIY 62 L+W R DLR+ DN AL A ++++ + AVF+ TP+QW H +S Q + Sbjct: 9 ALMWFRRDLRLHDNTALTLLLEQVVQASQHTESCLQAVFVMTPKQWLAHDMSISQVDLMM 68 Query: 63 ASLLQVQKSLSQ-KGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDK 121 +L + + L GI Q ++ DSI+ ++++C+ +T + N +YE+NE +RD Sbjct: 69 RTLTHLTRDLHHTLGIKLSVLQAESYSDSIDVIEAFCVDNHITHVGCNYEYEVNEQQRDT 128 Query: 122 LLEKRLQH-RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVP 180 L KRL + + D +LPP +I +YKV+TPF K Q L + + Sbjct: 129 ALAKRLSKLNIKFNQYHDQCILPPNTIKTGDDTLYKVFTPFYKKWQQTLQISPPVLYDIN 188 Query: 181 AI---RLTGPVTPSNIPRF----------------------------------------- 196 ++ + +T NI + Sbjct: 189 SLTEGDIKQKLTDLNINQASTDTSSTQNTSSTQHTSSTQSIKDSHQSVLQRFTSHYQLSK 248 Query: 197 --FDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVL 254 D ++ +P GEQ A+ L F ++ + Y RD PA+ GTSQLS YL++G++ Sbjct: 249 NNADTILESARADYPAGEQAAIDRLNSFVQQDIEEYGITRDQPALMGTSQLSAYLTLGII 308 Query: 255 SPRQCWNRLKEEFVDLLIKP------------KSGAFSWLNELIWREFYRHLMAFYPSVC 302 SPR C+ KS W++EL WR+FYRH+ P + Sbjct: 309 SPRLCYLTANARLESKSFADNESKLEIFENNSKSDVERWISELAWRDFYRHVTVDRPDIV 368 Query: 303 MGKPFIPWTE-KIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFL 361 G + T+ K+ W+ D+ +AW QG TG P+IDAAMR LN G+MHNRLRM+TA FL Sbjct: 369 KGAAYKKDTDNKLNWSYDNDDFEAWCQGMTGVPLIDAAMRCLNQTGFMHNRLRMVTAMFL 428 Query: 362 VKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQ 421 KDL +DWR+GE YFM L+DGD ASNNGGWQW+ASTG D+ PYFRI NP Q K D Sbjct: 429 TKDLFIDWRLGERYFMQNLIDGDFASNNGGWQWSASTGTDAAPYFRIMNPFSQAKTHDKD 488 Query: 422 GTFIRHWLPELNNVPTQYIHAPHSWLDK-----NDLSLNYPLPIVDHKKACHHTLNQYYA 476 FI+ WLPEL ++ +H + +NYPLP+++HK+A + + Q+ A Sbjct: 489 AIFIKSWLPELTDITANILHDENKLRKALSKQGAFAHVNYPLPMIEHKQARRYAIEQFKA 548 >gi|75910490|ref|YP_324786.1| deoxyribodipyrimidine photo-lyase type I [Anabaena variabilis ATCC 29413] gi|75704215|gb|ABA23891.1| deoxyribodipyrimidine photo-lyase type I [Anabaena variabilis ATCC 29413] Length = 479 Score = 400 bits (1027), Expect = e-109, Method: Composition-based stats. Identities = 163/478 (34%), Positives = 234/478 (48%), Gaps = 18/478 (3%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 L W R DLRITDN L A +S +KV+ VF P + ++ + ++ SL ++Q+ Sbjct: 6 LFWHRRDLRITDNIGLATARQHS-SKVVGVFCLDPNILERDDVAPVRVTYMIGSLQELQQ 64 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130 Q G + D ++ + +F+N E RD+ + L+ + Sbjct: 65 RYVQAGSQLLILRG----DPVQAIPHLAEALNAKAVFWNWDVEPYSQTRDRAIIATLKDK 120 Query: 131 VI--CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPV------PAI 182 I D +L P I + + Y VYTPF K + +L Sbjct: 121 GIQCLTHNWDQILHSPDEIRSGSNTPYTVYTPFWKNWSSKPKAKPVETLHNVEGLTEAEQ 180 Query: 183 RLTGPVTPSNIPRFFDYPF-QAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQG 241 L +P D F D + GE A L +F + + Y EQR+ P + G Sbjct: 181 ELAQKAGVKALPTAKDLGFFWDADLIIAPGEAAAQAKLAEFTAKAITEYQEQRNFPGVNG 240 Query: 242 TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKS-GAFSWLNELIWREFYRHLMAFYPS 300 TSQLS L GV+ R W E + + + +W EL WREFY+H M +P Sbjct: 241 TSQLSAALKFGVIGIRTVWQTTLEALENSRSEETTTSIRTWQQELAWREFYQHAMYNFPE 300 Query: 301 VCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASF 360 + G + + W + QAW +G TG+PI+DAAMRQ+N GWMHNR RMI ASF Sbjct: 301 LADG-AYRATFKNFPWETNEEHFQAWCEGKTGYPIVDAAMRQMNESGWMHNRCRMIVASF 359 Query: 361 LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDP 420 L KDLL++ + GE+YFM +L+DGDL++NNGGWQW+AS+G D P RIFNP Q ++FDP Sbjct: 360 LTKDLLINPQWGEKYFMQKLIDGDLSANNGGWQWSASSGMDPKP-LRIFNPASQSQKFDP 418 Query: 421 QGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478 +IR W+PEL ++ T+Y+ ++ Y PIVDH+K +Y K Sbjct: 419 DAEYIRQWVPELRSMDTEYLVT-GKITPLERHAVGYVKPIVDHQKQQQLFKQRYQQQK 475 >gi|325963959|ref|YP_004241865.1| deoxyribodipyrimidine photo-lyase type I [Arthrobacter phenanthrenivorans Sphe3] gi|323470046|gb|ADX73731.1| deoxyribodipyrimidine photo-lyase type I [Arthrobacter phenanthrenivorans Sphe3] Length = 478 Score = 400 bits (1027), Expect = e-109, Method: Composition-based stats. Identities = 158/482 (32%), Positives = 228/482 (47%), Gaps = 24/482 (4%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 +VWLR+DLR+ DN AL AA + V+I + + + +++ SL + Sbjct: 7 TSIVWLRDDLRLDDNPALAAAVDLG-LPLTVVYILDEDSEGVRPLGSASRWWLHHSLASL 65 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL- 127 SL G + L LF+NR+Y + E D ++ Sbjct: 66 ASSLEASGSRLLLQRGPAEP----ILKDLAAATNAGHLFWNRRYGLPERTVDAAVKAWAG 121 Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187 ++ + S+ ++L P +I A YKV+TPF +A + + D S P Sbjct: 122 ENGIEALSYQANLLFEPWTIRTGAGGPYKVFTPFWRACLASGDVRDPLSAPPQLPPPPAG 181 Query: 188 VTPS-------NIPRFFDYPFQAIDPM---FPIGEQNALHILRKFCKEKVYYYVEQRDIP 237 T S R F + + GE+ A L F + Y R+IP Sbjct: 182 KTGSGPAGDALETWRLFPSSPDWSGGLAKTWEPGEEGARQRLEDFLEGSAQDYGTGRNIP 241 Query: 238 AIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAF 297 ++GTS+LSP+L G +SP + W ++ F + + + +EL WREF HL+ Sbjct: 242 GVEGTSRLSPHLRFGEVSPFRVWREIRGRFPREVP---ADVGIFRSELGWREFCWHLLYT 298 Query: 298 YPSVCMGKPFIPWTEKIEWNK-DSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMI 356 P + + F P ++ EW K L AW+QG TG+P +DA MRQL GWMHNR+RM Sbjct: 299 NPDLAT-RNFRPEFDRFEWEKPGKDELAAWQQGRTGYPFVDAGMRQLWQTGWMHNRVRMA 357 Query: 357 TASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGK 416 ASFLVK+LL DWR GE +F L+D D ASN WQW A +G D+ PY+RIFNP Q K Sbjct: 358 AASFLVKNLLADWRTGEAWFWDTLVDADAASNPANWQWVAGSGADASPYYRIFNPVTQSK 417 Query: 417 RFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYA 476 +FD G ++R ++PEL + + IH P D YP P+VD + L Y Sbjct: 418 KFDAAGNYLRQYIPELAGLEAKAIHEPWK---AADGLHGYPRPLVDLPGSRERALAAYQK 474 Query: 477 AK 478 K Sbjct: 475 LK 476 >gi|332524149|ref|ZP_08400379.1| deoxyribodipyrimidine photo-lyase [Rubrivivax benzoatilyticus JA2] gi|332107488|gb|EGJ08712.1| deoxyribodipyrimidine photo-lyase [Rubrivivax benzoatilyticus JA2] Length = 505 Score = 400 bits (1027), Expect = e-109, Method: Composition-based stats. Identities = 177/487 (36%), Positives = 241/487 (49%), Gaps = 33/487 (6%) Query: 10 HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69 LVWLR DLR DN ALY A + +V VF+ PE + R+ FI S++ V Sbjct: 8 ALVWLRRDLRTEDNAALYHALRAA-RRVWCVFVFDPEILEPLPRADRRVEFIRDSVVGVD 66 Query: 70 KSLSQK-------GIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKL 122 L G ++ + ++ + E + RD Sbjct: 67 AELRALAASHGIDGAGLIVRHG----RPLQEIPRLAAALGAQAVYASHDDEPEALARDAR 122 Query: 123 LEKRLQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPV-- 179 + L I D V+ +L + V+TP+R A ++ L L S PV Sbjct: 123 VRGALADAGIAFHGSKDHVIFERDEVLTQGGGPFSVFTPYRNAWLKKLDDFYLSSYPVER 182 Query: 180 PAIRLTGPVTPSNIPRFFDYPFQAIDPM---FPIGEQNALHILRKFCKEKVYYYVEQRDI 236 A L +P D F++ + P G +L F E+V +Y + RD Sbjct: 183 HAGALAPKPAGETLPTLADIGFESTNLHALKLPSGPAGGRELLADFL-ERVDHYADWRDF 241 Query: 237 PAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMA 296 PA++G S L P+L G +S R RL E L GA WL+EL+WR+FY L+ Sbjct: 242 PAVKGPSYLGPHLRFGTVSIR----RLAREAHQRLTAGSRGAEVWLSELVWRDFYHQLLH 297 Query: 297 FYPSVCMGKPFIPWTEKIEWNK---DSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRL 353 +P V +G F P +++ W L AW +G TG+PI+DAAM QL G+MHNRL Sbjct: 298 HHPRV-VGGCFKPEYDRLHWEHGKHADELFAAWCEGRTGYPIVDAAMHQLTRTGYMHNRL 356 Query: 354 RMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTI 413 RMI+ASFL KDL +DWR GE +F L D DLASNNGGWQWAASTG D+ PYFRIFNP Sbjct: 357 RMISASFLTKDLGIDWRRGEAWFARHLNDFDLASNNGGWQWAASTGCDAQPYFRIFNPVS 416 Query: 414 QGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKN------DLSLNYPLPIVDHKKAC 467 Q +RFDP+G FIR +LP+L +P +HAP + L +YP P+V H++A Sbjct: 417 QSERFDPEGRFIRRYLPQLAKLPDTLLHAPWRARPADLAAAGVVLGRDYPAPVVAHEEAR 476 Query: 468 HHTLNQY 474 TL ++ Sbjct: 477 ERTLARF 483 >gi|13476703|ref|NP_108272.1| blue light photoreceptor cryptochrome [Mesorhizobium loti MAFF303099] gi|14027464|dbj|BAB53733.1| blue light photoreceptor cryptochrome [Mesorhizobium loti MAFF303099] Length = 477 Score = 399 bits (1026), Expect = e-109, Method: Composition-based stats. Identities = 161/488 (32%), Positives = 241/488 (49%), Gaps = 25/488 (5%) Query: 3 ATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIY 62 + A + +V R DLR+ DN A AA V+A++I + A +++ Sbjct: 2 SRQAQAPTIVLFRRDLRMGDNAA-LAAAAERGVPVVALYILDETTKGLRAMGAASRWWLH 60 Query: 63 ASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKL 122 SL + L + G D + +D+ +F+NR+Y+ +EV D Sbjct: 61 HSLAALGDLLRKAGANLFLAHGRTEDAVAKAIDA----SGANCVFWNRRYDPSEVAVDAR 116 Query: 123 LEKRLQHRV-ICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPA 181 L+ L+ + SFD ++L P + + YKV+TPF KA+ + D P Sbjct: 117 LKAALREKGLTALSFDGALLHEPSLLKTGSGGFYKVFTPFWKAMADKVDVRDPIDTPGQI 176 Query: 182 IRLTGPVTPSNIPRFFDYPFQ-----AIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDI 236 G + + P + + + GE+ A L +F + + Y QRD Sbjct: 177 DGWRGELGGLRLDELDLLPSKPDWAYGLRETWTPGEKGAQARLGQFIEHGLANYERQRDY 236 Query: 237 PAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMA 296 P TS+LSP+L+ G ++P Q + L+ SG + E+ WREF HL+ Sbjct: 237 PGQPSTSRLSPHLTFGEITPFQIFAALRR-------SKSSGTSKFRAEIGWREFSYHLLF 289 Query: 297 FYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMI 356 P + G+ F P + + W D L+ W++G TG+PI+DA MR+L GWMHNR+RMI Sbjct: 290 HNPDLS-GRNFRPEFDAMSWRDDIRALRTWQRGLTGYPIVDAGMRELWRTGWMHNRVRMI 348 Query: 357 TASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGK 416 ASFL+KDL++DWR GE++F L+D D A+N WQW A +G D PYFRIFNP +QG+ Sbjct: 349 VASFLIKDLMIDWRHGEKWFWDTLVDADAANNPASWQWVAGSGADPAPYFRIFNPVLQGE 408 Query: 417 RFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKN------DLSLNYPLPIVDHKKACHHT 470 +FDP G ++R +PE++ +P +YIH P L YP PIVDH A Sbjct: 409 KFDPHGDYVRQHVPEISALPDRYIHRPWEAPAAVLKDKGIVLGKTYPNPIVDHGAARERA 468 Query: 471 LNQYYAAK 478 L Y + K Sbjct: 469 LIVYQSLK 476 >gi|6594296|dbj|BAA88423.1| blue light photoreceptor [Adiantum capillus-veneris] gi|6594300|dbj|BAA88425.1| blue light photoreceptor [Adiantum capillus-veneris] Length = 699 Score = 399 bits (1025), Expect = e-109, Method: Composition-based stats. Identities = 140/493 (28%), Positives = 229/493 (46%), Gaps = 24/493 (4%) Query: 6 AMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASL 65 A +VWLR DLR+ DN AL AA + V+ VFI +PE+ RQ ++ SL Sbjct: 2 AKPCTIVWLRRDLRLEDNPALCAAGRIGN--VVPVFIWSPEEERQFHPGRVSRWWLKQSL 59 Query: 66 LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125 +Q+ SL G+ + + D++ L T++FYN Y+ + RD +++ Sbjct: 60 IQLDVSLRSFGVPLVMRKST---DTLGTLQELIKATGATQVFYNHLYDPISLVRDHHVKQ 116 Query: 126 RL-QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL 184 L Q + +SF+ +L P +LN + + + + + + + D LP + Sbjct: 117 GLTQSGIQVQSFNGDLLYEPWEVLNDDGKPFTSFESYWQKCLNMPFEPDSPLLPPRRLTS 176 Query: 185 TGPVTPSNIPR---FFDYPFQAIDPM----FPIGEQNALHILRKFCKEKVYYYVEQRDIP 237 P+ P D ++ + + + G NA L F + Y R Sbjct: 177 IAGSIPTYTPEELGLEDETEKSSNALLARAWAPGWSNADRALEAFLAGPLLEYSRNRHKI 236 Query: 238 AIQGTSQLSPYLSIGVLSPRQCWNRLKEEF----VDLLIKPKSGAFSWLNELIWREFYRH 293 TS LSP++ G +S R+ ++ ++ D + + ++ + +RE+ R+ Sbjct: 237 DGPTTSLLSPHMHFGEVSVRKVYHSVRRLQLLWAKDGSKLGEESIYFFMRSIGFREYSRY 296 Query: 294 LMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRL 353 L +P + + + W D +AW+QG TG+P++DA MR+L GW+HNR+ Sbjct: 297 LSFNFP-FTHERSLLSNLKSFPWRVDEGFFKAWRQGRTGYPLVDAGMRELWATGWLHNRV 355 Query: 354 RMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTI 413 R+I +SF VK L + WR G +YF LLD DL S+ GWQ+ + + D R+ NP Sbjct: 356 RVIVSSFCVKFLQLPWRWGMKYFWDTLLDADLESDVLGWQYISGSLPDGHELDRMDNPQT 415 Query: 414 QGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDK------NDLSLNYPLPIVDHKKAC 467 +G + DP G ++R WLPEL +PT++IH P +L NYP PIV+ A Sbjct: 416 EGYKHDPVGEYVRRWLPELVRLPTEWIHHPWDAPPAVLRAAGVELGSNYPRPIVEVAAAR 475 Query: 468 HHTLNQYYAAKKQ 480 +Q Sbjct: 476 ERLRQAVAQMWEQ 488 >gi|311106052|ref|YP_003978905.1| deoxyribodipyrimidine photo-lyase [Achromobacter xylosoxidans A8] gi|310760741|gb|ADP16190.1| deoxyribodipyrimidine photo-lyase [Achromobacter xylosoxidans A8] Length = 472 Score = 399 bits (1024), Expect = e-109, Method: Composition-based stats. Identities = 193/469 (41%), Positives = 269/469 (57%), Gaps = 9/469 (1%) Query: 10 HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69 L+WLR DLR DN A V A+F+A P QWR HG + + F +L ++ Sbjct: 3 TLLWLRTDLRAHDNP--ALAAAAEAGTVTALFLAAPGQWRLHGDAPTKVDFWLRNLRELS 60 Query: 70 KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH 129 + L + GI + ++ ++ + L +C + ++ N ++ +NE RRD + RLQ Sbjct: 61 RELGRLGIPLRLLTVPDWSNAPDALADFCRTHAIGQVHANAEWAVNERRRDAAVAARLQA 120 Query: 130 -RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIR---LT 185 V + LL PG++L + Y+VYTP+ +A + L A LR+LP P + Sbjct: 121 LGVDWTLHHGASLLRPGTVLTGKGECYRVYTPYARACRERLRTAPLRALPAPRAQTPPPW 180 Query: 186 GPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245 F+ P + ++P GE A L F + Y EQRD P++ TS L Sbjct: 181 PADPLPAAFEGFEAPADPVRALWPAGEDAASERLEAFADGVIDAYQEQRDFPSLPATSCL 240 Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305 SPYL+ GVLSP Q + K GA +W+NEL+WREFY+HL+A +PS+ M + Sbjct: 241 SPYLAAGVLSPGQALRAALAANHGEVDGGKRGAATWINELLWREFYQHLLAAHPSLSMHQ 300 Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365 P P T + W L+AW+QG TG PI+DAAMRQL +GWMHNRLRM+TA FL K+L Sbjct: 301 PMKPETAAVPWRDAPDDLRAWQQGQTGIPIVDAAMRQLLALGWMHNRLRMVTAMFLSKNL 360 Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425 L+DWR+GE +FM+QL+DGDLA+NNGGWQW+ASTG D+VPYFRIFNP Q ++FDP G F+ Sbjct: 361 LIDWRLGEAWFMAQLVDGDLAANNGGWQWSASTGADAVPYFRIFNPLSQSRKFDPDGVFL 420 Query: 426 RHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQY 474 R WLPEL ++ ++ IH P YPL IVD ++ L + Sbjct: 421 REWLPELAHLDSRAIHDPSPMERAQA---GYPLAIVDLAQSRLRALEAF 466 >gi|1468975|gb|AAB04996.1| AT-PHH1 [Arabidopsis thaliana] Length = 612 Score = 399 bits (1024), Expect = e-109, Method: Composition-based stats. Identities = 136/494 (27%), Positives = 223/494 (45%), Gaps = 26/494 (5%) Query: 10 HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69 +VW R DLRI DN AL AA H V VFI PE+ Q ++ SL + Sbjct: 7 TIVWFRRDLRIEDNPALAAAAHEG--SVFPVFIWCPEEEGQFYPGRASRWWMKQSLAHLS 64 Query: 70 KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH 129 +SL G Q N +I + TK+ +N Y+ + RD ++++L Sbjct: 65 QSLKALGSDLTLIQTHN---TISAILDCIRVTGPTKVVFNHLYDPVSLVRDHTVKEKLVE 121 Query: 130 RVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188 R I +S++ +L P I + + + + K + +++ + P + +T Sbjct: 122 RGISVQSYNGDLLYEPWEIYCEKGKPFTSFNSYWKKCLDMSIESVMLPPPWRLMPITAAA 181 Query: 189 TPSNIPRFFDYPFQA---------IDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAI 239 + + + + G NA +L +F ++++ Y + Sbjct: 182 EAIWACSIEELGLENEAEKPSNALLTRAWSPGWSNADKLLNEFIEKQLIDYAKNSKKVVG 241 Query: 240 QGTSQLSPYLSIGVLSPRQCWNRLKEEF----VDLLIKPKSGAFSWLNELIWREFYRHLM 295 TS LSPYL G +S R + + + D + + A +L + RE+ R++ Sbjct: 242 NSTSLLSPYLHFGEISVRHVFQCARMKQIIWARDKNSEGEESADLFLRGIGLREYSRYIC 301 Query: 296 AFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRM 355 +P + + W+ D +AW+QG TG+P++DA MR+L GWMHNR+R+ Sbjct: 302 FNFP-FTHEQSLLSHLRFFPWDADVDKFKAWRQGRTGYPLVDAGMRELWATGWMHNRIRV 360 Query: 356 ITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQG 415 I +SF VK LL+ W+ G +YF L D DL + GWQ+ + + D R+ NP +QG Sbjct: 361 IVSSFGVKFLLLPWKWGMKYFWDTLXDADLECDILGWQYISGSIPDGHELDRLDNPALQG 420 Query: 416 KRFDPQGTFIRHWLPELNNVPTQYIHAPHSW------LDKNDLSLNYPLPIVDHKKACHH 469 ++DP+G +IR WLPEL +PT++IH P +L NY PIVD A Sbjct: 421 AKYDPEGEYIRQWLPELARLPTEWIHHPWDAPLTVLKASGVELGTNYAKPIVDIDTAREL 480 Query: 470 TLNQYYAAKKQSLL 483 ++ ++ Sbjct: 481 LAKAISRTREAQIM 494 >gi|299135199|ref|ZP_07028390.1| DNA photolyase FAD-binding [Afipia sp. 1NLS2] gi|298590176|gb|EFI50380.1| DNA photolyase FAD-binding [Afipia sp. 1NLS2] Length = 485 Score = 399 bits (1024), Expect = e-109, Method: Composition-based stats. Identities = 161/497 (32%), Positives = 234/497 (47%), Gaps = 30/497 (6%) Query: 1 MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHG---ISARQ 57 M A A +VW R+DLR++D+ AL AA ++ A +I +++ + +HG + A Sbjct: 1 MNAPAA--TAIVWFRDDLRLSDHAALIAA-RDAGATLICLYVLDDTETGKHGPRSLGAAA 57 Query: 58 SHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEV 117 ++ SL + L + G + D+ E L + +F+ E Sbjct: 58 QWWLANSLRALDTDLKKLGQHLVLRRG----DAHEVLPKLAREANAKAVFWIDSEVSAEA 113 Query: 118 RRDKLLEKRLQH-RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRS 176 R + + + L+ V +L P SI N +V+TPF K + Q + Sbjct: 114 ARARDVAEALKEIGVEVHVSASDLLASPQSIRNKEGHGLRVFTPFWKRVRA---QGEPPR 170 Query: 177 LPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIG--------EQNALHILRKFCKEKVY 228 +L PV D+ + P + G E A L F + Sbjct: 171 PLAAVRKLPPPVVSLKSENLEDWQLEPTRPDWAGGFRETWTPGEAGAHRRLHDFLDGAIK 230 Query: 229 YYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWR 288 Y E RD P S LSP+L G +SPRQ ++ + + +L+EL WR Sbjct: 231 GYAEGRDFPGKDHASHLSPHLRFGEISPRQVFHAAR-FAAERHPALSRDIEKFLSELGWR 289 Query: 289 EFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGW 348 EF RHL+ +P + + W +D+ L+AW+QG TG+PI+DA MR+L G Sbjct: 290 EFCRHLLFDHPDLHRHN-LQSSFDDFPWRRDAKALRAWQQGRTGYPIVDAGMRELWHTGA 348 Query: 349 MHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRI 408 M NR+RM+TASFLVK LL+DWR GE++F L+D D SN G WQW A G D+ PYFRI Sbjct: 349 MQNRIRMVTASFLVKHLLLDWRDGEQWFWDTLVDADPGSNPGNWQWVAGCGADAAPYFRI 408 Query: 409 FNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHS------WLDKNDLSLNYPLPIVD 462 FNP +QG++FDP G ++ W+PEL+ +P IH P L YP PIVD Sbjct: 409 FNPILQGEKFDPDGAYVARWVPELSKLPPALIHKPWEATPMELAAAGVTLGKTYPEPIVD 468 Query: 463 HKKACHHTLNQYYAAKK 479 HK A L Y ++ Sbjct: 469 HKDARERALAAYRRTRR 485 >gi|161522875|ref|YP_001585804.1| deoxyribodipyrimidine photo-lyase [Burkholderia multivorans ATCC 17616] gi|189348291|ref|YP_001941487.1| deoxyribodipyrimidine photo lyase [Burkholderia multivorans ATCC 17616] gi|160346428|gb|ABX19512.1| Deoxyribodipyrimidine photo-lyase [Burkholderia multivorans ATCC 17616] gi|189338429|dbj|BAG47497.1| deoxyribodipyrimidine photo lyase [Burkholderia multivorans ATCC 17616] Length = 505 Score = 399 bits (1024), Expect = e-109, Method: Composition-based stats. Identities = 153/494 (30%), Positives = 236/494 (47%), Gaps = 31/494 (6%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 +VW R+D R+ DN AL A + V+ V++ P + + Q +++ SL ++ Sbjct: 12 PVVVWFRDDQRLGDNPALCHAVASGH-PVVCVYVHDPAPSIRRPMGGAQRWWLHESLGKL 70 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128 +LS G + E + + + K+ +NR+Y D +++ L Sbjct: 71 DDALSALGGSLIVLRGDEH----EAIRDFAVGIGAAKVVWNRRYSKAHTGTDASIKQDLV 126 Query: 129 HRVICKS-FDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187 R I S F+ +L P ++L Y+V++ + +A ++ + I Sbjct: 127 GRGIAVSTFNGHLLHEPWTVLTREGLPYQVFSAYWRAACRDDLSPPPPLPAPSRIAFFPV 186 Query: 188 VT--PSNIPRFFDYPFQAIDP--------MFPIGEQNALHILRKFCKEKVYYYVEQRDIP 237 ++ Q P + GE+ A L F + + Y + RD+P Sbjct: 187 PHNVTPHVCTLRALGLQPTAPDWASGLRLTWRCGEEAARQRLDAFLEHSLRDYADMRDLP 246 Query: 238 AIQGTSQLSPYLSIGVLSPRQCWN--------RLKEEFVDLLIKPKSGAFSWLNELIWRE 289 A TS+LSPYL G +S RQ W + DL +L+E+ WRE Sbjct: 247 AAHATSRLSPYLRFGNISVRQVWYAASSAASAMQRTRKADLGDPQSGPLNKFLSEIGWRE 306 Query: 290 FYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWM 349 F HL+ +P + F + + W D + L+ W+ G+TG+P++DA MR+L GWM Sbjct: 307 FSYHLLYHFPPL-HQVNFRRQFDSMPWRDDPNALRKWQTGHTGYPLVDAGMRELWHTGWM 365 Query: 350 HNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIF 409 HNR+RM+ ASFL K LL+DWR GE +F L+D D ASN WQW + +G D+ PYFRIF Sbjct: 366 HNRVRMVVASFLSKHLLIDWREGEAWFWDTLVDADEASNPASWQWVSGSGADAAPYFRIF 425 Query: 410 NPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKN------DLSLNYPLPIVDH 463 NP +QG++FDPQG + RHW+PEL+ + + IHAP + + L YP PIVDH Sbjct: 426 NPVLQGQKFDPQGEYTRHWVPELSKMSAEKIHAPWTASAEQLHDACVSLGRTYPFPIVDH 485 Query: 464 KKACHHTLNQYYAA 477 + A L Sbjct: 486 QAARTRALESVKRV 499 >gi|71065000|ref|YP_263727.1| deoxyribodipyrimidine photo-lyase type I [Psychrobacter arcticus 273-4] gi|71037985|gb|AAZ18293.1| Deoxyribodipyrimidine photo-lyase type I [Psychrobacter arcticus 273-4] Length = 541 Score = 398 bits (1023), Expect = e-108, Method: Composition-based stats. Identities = 186/516 (36%), Positives = 262/516 (50%), Gaps = 50/516 (9%) Query: 11 LVWLRNDLRITDNKALYAACHNSD---AKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67 L+W R DLR+ DN AL A C ++ AK+ AVF TPEQW+ H +S Q I +L Sbjct: 25 LMWFRRDLRVHDNTALAAICERANTDNAKLSAVFFLTPEQWQTHDMSLTQLDHIARTLPI 84 Query: 68 VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127 + + L I C +F D I L + C ++ + N +YE NE+ RD+ L K+L Sbjct: 85 LAQKLQALNITLTVQICPSFTDCIAALSALCESNNISCVMANHEYEGNEIARDEQLTKQL 144 Query: 128 QH-RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 + + D +LPP +I + MY+V+TPF K L D++ PAI Sbjct: 145 AKTDIEFIRWHDQCILPPQTITTNDNSMYQVFTPFYKKWRHTLEVGDIQIHTAPAITNNE 204 Query: 187 PV--------------------------------TPSNIPRFFDYPFQAIDPMFPIGEQN 214 + D +P GE Sbjct: 205 QINLISSEFSANTIQAIEALCKETVHDYQQYLQTHECYQYIDTDKQISQARTAYPAGEAE 264 Query: 215 ALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKP 274 A H L +F + + +Y RD+P++ TS LS YL+IG LSPR C+ + + +L Sbjct: 265 ACHRLTQFISDDINHYDVSRDVPSLHATSHLSAYLTIGALSPRLCYLQATKALGELHRND 324 Query: 275 --------KSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEK-IEWNKDSHLLQA 325 + W++EL WR+FYRH++ + P + + + T+K I W+ D A Sbjct: 325 GDNFDSGDNNDINRWISELAWRDFYRHVLDYKPELIRHQAYKHETDKKINWSYDEDAFAA 384 Query: 326 WKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDL 385 W++G TG P++DAAMR LN G+MHNRLRM+TA FL KDLL+DWR GE YFM QL+DGD Sbjct: 385 WREGKTGVPLVDAAMRCLNATGFMHNRLRMVTAMFLTKDLLIDWRWGERYFMQQLIDGDF 444 Query: 386 ASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHS 445 ASNNGGWQW+ASTG DS PYFRI NP Q K D G F++ WLPEL +P +H+ Sbjct: 445 ASNNGGWQWSASTGTDSAPYFRIMNPFSQAKTHDSDGIFLKTWLPELEPIPASILHSEDK 504 Query: 446 WLDK-----NDLSLNYPLPIVDHKKACHHTLNQYYA 476 ++YP+P+V+HK A + ++ Sbjct: 505 MRKALSKNGAFADIDYPIPMVEHKLARQLAIAEFKK 540 >gi|87120903|ref|ZP_01076795.1| putative photolyase [Marinomonas sp. MED121] gi|86163741|gb|EAQ65014.1| putative photolyase [Marinomonas sp. MED121] Length = 475 Score = 398 bits (1023), Expect = e-108, Method: Composition-based stats. Identities = 148/485 (30%), Positives = 240/485 (49%), Gaps = 33/485 (6%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 + W R DLR++DN AL AA D V+ ++I + + + +++ SL + Sbjct: 7 IHWFRQDLRLSDNPALSAAVSQGD--VLPIYILDDKNANEFAMGGASRWWLHHSLTALDA 64 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH- 129 SL+ +++ + +E L + VT + +NR YE ++RD+ +++ L+ Sbjct: 65 SLTACLNLYK-------GEPLEVLLELIERLDVTHVVWNRCYEPWRMQRDEKIKQTLKEI 117 Query: 130 RVICKSFDDSVLLPPGSILNHALQMYKVYTPF-RKALIQNLVQADLRSLPVPAIRLTGPV 188 + +S++ S+L P I YKV+TPF RK ++ + P Sbjct: 118 GIQVQSYNASLLWEPWQIKKPDGTAYKVFTPFYRKGCLKAEMPRQPLPRPDNQAVYLKDD 177 Query: 189 TPSNIPRFFDYPF----QAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244 + P + ++ IGE A KF +E + Y E R+IP+ ++ Sbjct: 178 KGQALDGLNLLPTIAWDEPFKDLWQIGEDKAQSQFFKFLEEGLASYKEGRNIPSKPFVTR 237 Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304 LSP++ G +SP Q W ++ + + +EL WREF + PS+ Sbjct: 238 LSPHIHFGEISPNQLWYGVQ------SVADNEHVDHFCSELGWREFSYSQLFVNPSLPTH 291 Query: 305 KPFIPWTEKIEWNKDSH-----LLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITAS 359 + W ++ LL+AW+QG TG P++DA MR+L G+MHNR+RMI AS Sbjct: 292 N-LQSKFDAFPWREEDTSSKDSLLRAWQQGKTGIPMVDAGMRELWQTGYMHNRVRMIVAS 350 Query: 360 FLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFD 419 FLVK+L + W GE +F LLD DLA+N+ WQW A G D+ PYFRIFNP +QG+RFD Sbjct: 351 FLVKNLRIHWHQGERWFWDTLLDADLANNSASWQWVAGCGADAAPYFRIFNPVVQGQRFD 410 Query: 420 PQGTFIRHWLPELNNVPTQYIHAPHSWLD------KNDLSLNYPLPIVDHKKACHHTLNQ 473 +G +I+ ++PE++ +P +Y+ +P + L YP PI+D K + L Sbjct: 411 AEGDYIKKFVPEISLLPKKYLFSPWEAPELVLQEAGVKLGETYPQPIIDLKASREAALEA 470 Query: 474 YYAAK 478 + + K Sbjct: 471 FKSLK 475 >gi|124265897|ref|YP_001019901.1| deoxyribodipyrimidine photo-lyase type I [Methylibium petroleiphilum PM1] gi|124258672|gb|ABM93666.1| Deoxyribodipyrimidine photo-lyase type I [Methylibium petroleiphilum PM1] Length = 497 Score = 398 bits (1023), Expect = e-108, Method: Composition-based stats. Identities = 173/500 (34%), Positives = 243/500 (48%), Gaps = 28/500 (5%) Query: 1 MKATTAMSV--HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQS 58 M + ++ LVW R DLR D+ ALY A + +V F+ E + R+ Sbjct: 1 MDKASGKTLDAALVWCRRDLRAHDHAALYHALRAA-RRVWVAFVFDTEILDPLPRTDRRV 59 Query: 59 HFIYASLLQVQKSLSQKG---IVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEIN 115 FI SL+ + L G + + + V ++ N YE Sbjct: 60 EFIRDSLVDLDAQLHTLGRSHGTEGVGLIVRHGRARDEIPRLAAALHVQAVYANTDYEPA 119 Query: 116 EVRRDKLLEKRLQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADL 174 V RD + L I D V+ +L A Y V+TP++ A ++ L L Sbjct: 120 AVARDAQVRGALAQTGIAFHPAKDQVVFDTDEVLTGAGTPYGVFTPYKNAWLKKLEPFYL 179 Query: 175 RSLPVP----AIRLTGPVTPSNIPRFFDYPFQAIDPM---FPIGEQNALHILRKFCKEKV 227 ++ PV A+ + +P F+ + G +L F E++ Sbjct: 180 QAYPVGRHAGALAPRPAGEAAGVPTLAAIGFEPTNLAALKLAPGTAGGRALLEDFGDERI 239 Query: 228 YYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIW 287 Y + RD PA++G S LS +L G LS R+ L D GA WL+ELIW Sbjct: 240 DRYDQTRDFPAVKGPSYLSVHLRFGTLSIRE----LARLAWDRARAGSRGAEVWLSELIW 295 Query: 288 REFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSH---LLQAWKQGYTGFPIIDAAMRQLN 344 R+FY ++ +P V + + F P +KI+W H L AW +G TG+P++DAAM Q+N Sbjct: 296 RDFYHQVLHHHPQV-VERSFKPEYDKIKWEHGKHADALFAAWCEGRTGYPLVDAAMLQIN 354 Query: 345 TIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVP 404 G+MHNRLRM+ ASFL KDL +DWR GE YF +L D DLA+NNGGWQWA+S+G D+ P Sbjct: 355 QTGYMHNRLRMVVASFLCKDLGLDWRRGERYFAEKLNDYDLAANNGGWQWASSSGCDAQP 414 Query: 405 YFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHS------WLDKNDLSLNYPL 458 YFRIFNP Q ++FD QG FIR +LP+L +P +HAP L +YP Sbjct: 415 YFRIFNPVSQSQKFDAQGKFIRRYLPQLAALPDAALHAPWDAKPLDLVAAGLVLGRDYPE 474 Query: 459 PIVDHKKACHHTLNQYYAAK 478 PIV H+ A TL +Y K Sbjct: 475 PIVRHELARERTLARYAVVK 494 >gi|254418176|ref|ZP_05031900.1| deoxyribodipyrimidine photolyase family [Brevundimonas sp. BAL3] gi|196184353|gb|EDX79329.1| deoxyribodipyrimidine photolyase family [Brevundimonas sp. BAL3] Length = 488 Score = 398 bits (1023), Expect = e-108, Method: Composition-based stats. Identities = 171/486 (35%), Positives = 245/486 (50%), Gaps = 22/486 (4%) Query: 3 ATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIY 62 A A ++W R DLR+ DN ALY A ++ VFI + R A ++ Sbjct: 4 ACVATKPVVLWFRRDLRLNDNPALYHAVATG-RPILPVFILDRDPDR--PAGAASLWWLD 60 Query: 63 ASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKL 122 SL + SL ++G + DS+ L S LF NR +E RD Sbjct: 61 KSLRALDDSLRERGSRLILRRG----DSLTQLQSLIEDTGADALFMNRLFEPAAFARDAE 116 Query: 123 LEKRLQ-HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADL----RSL 177 + L+ V C+ F+ S+L PG++LN + YKV+TPF KAL+ R + Sbjct: 117 IAHELKSAGVDCRGFNGSLLARPGAVLNGSDAPYKVFTPFMKALLATAEPPPPTTAPRRI 176 Query: 178 PVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIP 237 P T + + + D + GE A L F + Y + RD P Sbjct: 177 ATPDAVQTESIDDWRLHPTRSDWSKGFD--WTPGEAGADAALSDFLARGLKTYAKGRDHP 234 Query: 238 AIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAF 297 A+ TS+LSP+L G +SP + R + + P A ++ EL WR+F HL+ Sbjct: 235 ALPTTSRLSPHLHWGEISPWRAAQRARGAADAGAV-PAGEADKFVAELGWRDFSAHLLHH 293 Query: 298 YPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMIT 357 +P++ + F P E + W D L+AWK+G TG+P++DA MRQL T GWMHNR+RM+ Sbjct: 294 FPTIT-DRAFRPEYESMPWRGDPEGLEAWKRGRTGYPLVDAGMRQLWTTGWMHNRVRMVV 352 Query: 358 ASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKR 417 ASFLVK LL+DWR GE +F L+D DLASN WQW A +G D+ PYFRIFNP QG++ Sbjct: 353 ASFLVKHLLIDWREGEAWFWDTLVDADLASNVQNWQWVAGSGADAAPYFRIFNPITQGEK 412 Query: 418 FDPQGTFIRHWLPELNNVPTQYIHAPHSWL------DKNDLSLNYPLPIVDHKKACHHTL 471 FD G ++R W+PEL +P +++ +P + L +YP PI+DH +A L Sbjct: 413 FDATGGYVRRWVPELRRLPDRWLPSPWTAPPEVLRDAGVRLGKDYPHPILDHAQARARAL 472 Query: 472 NQYYAA 477 + Sbjct: 473 DALKTV 478 >gi|195995779|ref|XP_002107758.1| hypothetical protein TRIADDRAFT_51591 [Trichoplax adhaerens] gi|190588534|gb|EDV28556.1| hypothetical protein TRIADDRAFT_51591 [Trichoplax adhaerens] Length = 513 Score = 398 bits (1022), Expect = e-108, Method: Composition-based stats. Identities = 156/497 (31%), Positives = 236/497 (47%), Gaps = 25/497 (5%) Query: 3 ATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIY 62 +++ + LVWLR DLR+ DN AL+ A +I V+I + + ++Y Sbjct: 2 SSSKIPCTLVWLRRDLRLIDNPALFHAAKRGQ--LITVYIFDEDCSGKRRTGQACLWWLY 59 Query: 63 ASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKL 122 SL ++ LSQ I D+ L + +++NR YE E RD Sbjct: 60 HSLKSLRNQLSQWNIPLIVKSG---KDAFTILKKLLDRYNADAIYWNRCYEPFEYNRDYS 116 Query: 123 LEKRL-QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPA 181 +EKR ++ +++ D VL P + N Q ++++ + + P Sbjct: 117 IEKRFVARKIKVETYQDRVLYEPWKVKNGKGQPFQLFPCYWNQCLSLPQPRKPYDKPKFT 176 Query: 182 IRLTGPVT--------PSNIPRFFDYPFQ-AIDPMFPIGEQNALHILRKFCKEKVYYYVE 232 + G V + D + + GE+ A+ L++F K + Y E Sbjct: 177 VHNQGCVEYKYDDAGVWQLLASIADNDTSTRLQDFWHPGEEGAIQKLKRFMKNSLKVYSE 236 Query: 233 QRDIPAIQGTSQLSPYLSIGVLSPRQCWNRL---KEEFVDLLIKPKSGAFSWLNELIWRE 289 +RD + TS LSPYL G +SP W+ + + P +L EL WRE Sbjct: 237 KRDCIWLDATSNLSPYLHFGEISPFTIWHTACFMRHSTTRSISVPLHCTKRYLTELGWRE 296 Query: 290 FYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWM 349 F HL+ YP + K F +++ D L AW+ G TG+PI+DA MRQL+ G+M Sbjct: 297 FTCHLLFHYPDLPE-KSFKSNFHQLKLEIDEEKLHAWQNGSTGYPIVDAGMRQLSQAGFM 355 Query: 350 HNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIF 409 NR+RMI ASFL+ LL+ W+ GEE+F ++L+D DLA + WQW A G D PYFR+F Sbjct: 356 PNRVRMIVASFLIMHLLIPWQKGEEWFWNRLVDADLAQSVCNWQWIAGCGPDVAPYFRMF 415 Query: 410 NPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWL------DKNDLSLNYPLPIVDH 463 NP IQG++FD +G ++R W+PE+ +P Y+ P L YP PIV+H Sbjct: 416 NPVIQGEKFDAEGYYVRKWIPEIAKLPNSYVQKPWEAPPTMLKIANITLGKTYPRPIVEH 475 Query: 464 KKACHHTLNQYYAAKKQ 480 K A L Y K++ Sbjct: 476 KVARELALATYSQLKRK 492 >gi|45935260|gb|AAS79665.1| cryptochrome 2A apoprotein [Pisum sativum] gi|45935262|gb|AAS79666.1| cryptochrome 2A apoprotein [Pisum sativum] Length = 629 Score = 398 bits (1022), Expect = e-108, Method: Composition-based stats. Identities = 140/495 (28%), Positives = 222/495 (44%), Gaps = 32/495 (6%) Query: 10 HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69 +VW R DLRI DN AL AA D V VFI P++ Q ++ SL + Sbjct: 6 TIVWFRRDLRIEDNPALAAAAR--DGSVFPVFIWCPKEEGQFYPGRVSRWWLKQSLAHLD 63 Query: 70 KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH 129 +SL G + D ++ L + TK+ +N Y+ + RD ++++L Sbjct: 64 QSLKSLGAKLVLIKT---DSTLNALLECVNAIQATKVVFNHLYDPVSLVRDHNIKEKLVE 120 Query: 130 RVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188 I KS++ +L P + + + + PF + + ++ P I G V Sbjct: 121 LGISVKSYNGDLLYEPWELYDEKGHAFTTFDPFWERCLHKQMEPVSLIPPWQLIPAKGKV 180 Query: 189 TPSNIPRFFDYPFQA---------IDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAI 239 D + + + G NA L +F +++ Y + R Sbjct: 181 ---ERCSIEDLGLENELEKPSNALLGRAWSPGWGNANKALTEFMDKQLLNYSKNRQKVGG 237 Query: 240 QGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKP----KSGAFSWLNELIWREFYRHLM 295 TS LSPYL G LS R+ + + + + + K +L + RE+ R+L Sbjct: 238 DSTSLLSPYLHFGELSVRKVFQMARVKQISWGNEGNSVGKESVTLFLRAIGLREYSRYLC 297 Query: 296 AFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRM 355 +P + + WN D + W+QG TG+P++DA MR+L GWMHNR+R+ Sbjct: 298 FNFP-FTHERALLGHLSFFPWNADPSNFKTWRQGRTGYPLVDAGMRELWATGWMHNRIRV 356 Query: 356 ITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQG 415 I +SF VK LL+ W+ G +YF LLD DL + GWQ+ + D R+ +P I G Sbjct: 357 IVSSFAVKMLLLPWKWGMKYFWDTLLDADLECDILGWQYISGCLPDGHELERLDDPEILG 416 Query: 416 KRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDK------NDLSLNYPLPIVDHKKACH- 468 +FDP+G ++R WLPEL +PT++IH P + +L NYP PI+D A Sbjct: 417 AKFDPEGEYVRQWLPELARMPTEWIHHPWNAPLSVLRASGVELGQNYPNPIIDIDLAREK 476 Query: 469 --HTLNQYYAAKKQS 481 + + + + S Sbjct: 477 LTQAIFKMWEIQAAS 491 >gi|330824678|ref|YP_004387981.1| deoxyribodipyrimidine photo-lyase [Alicycliphilus denitrificans K601] gi|329310050|gb|AEB84465.1| Deoxyribodipyrimidine photo-lyase [Alicycliphilus denitrificans K601] Length = 491 Score = 398 bits (1022), Expect = e-108, Method: Composition-based stats. Identities = 181/490 (36%), Positives = 257/490 (52%), Gaps = 31/490 (6%) Query: 6 AMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGI-SARQSHFIYAS 64 A + LVWLR DLR D+ ALY A +V F+ + S R+ FI+AS Sbjct: 5 ATASALVWLRRDLRCDDHAALYHALRRF-GRVYCAFVFDTDILDALPTRSDRRVEFIHAS 63 Query: 65 LLQVQKSLSQK-------GIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEV 117 +L++ + L++ G + E + V ++ NR YE + Sbjct: 64 VLELHQGLAELAARSGAPGGGLIVRHGP----APECIVRLARSLGVQEVLANRDYEPQAI 119 Query: 118 RRDKLLEKRLQHRVICKS-FDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRS 176 RD+ + + LQ I S + D LL +L + Y V+TP+R+A +Q L L Sbjct: 120 ERDRRVARALQAAGIAFSDYKDQALLDRDEVLTRQGRPYGVFTPYRRAWLQRLDAFQLTP 179 Query: 177 LPV--PAIRLTGPVTPSNIPRFFDYPFQAIDPM---FPIGEQNALHILRKFCKEKVYYYV 231 PV A L P +P + F + P G + A +L+ F ++ Y Sbjct: 180 YPVASHARHLAAPPAGECLPTLQELGFARTNLHELPLPTGMRGAQLLLQDFMP-RMAAYH 238 Query: 232 EQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFY 291 E RD P +G S LS +L G +S R +L + GA +WL+EL WR+FY Sbjct: 239 EARDYPGRKGVSYLSVHLRFGTVSIR----QLAALAAAQAAQGCEGAQAWLSELAWRDFY 294 Query: 292 RHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHN 351 ++ +P V + F P ++++W+ L QAW TG+P++DAAMRQL+ G+MHN Sbjct: 295 FMILWHHPQVAT-QSFKPVYDRVQWDDAPELWQAWCGARTGYPLVDAAMRQLHQTGYMHN 353 Query: 352 RLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNP 411 RLRM+ ASFL KDL +DWR GE +F + L D DLA+NNGGWQWAASTG D+ P+FRIFNP Sbjct: 354 RLRMVVASFLTKDLGLDWRRGERHFAAHLNDYDLAANNGGWQWAASTGCDAQPWFRIFNP 413 Query: 412 TIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKN------DLSLNYPLPIVDHKK 465 Q +RFDPQG FIR +LPEL VP +IH P + L ++YPLP+VDH + Sbjct: 414 VTQSQRFDPQGRFIRCYLPELARVPDAHIHFPAAMGPLELAACGLRLGVDYPLPVVDHAR 473 Query: 466 ACHHTLNQYY 475 A TL +++ Sbjct: 474 ARERTLMRFH 483 >gi|284800868|ref|YP_003412733.1| hypothetical protein LM5578_0616 [Listeria monocytogenes 08-5578] gi|284994054|ref|YP_003415822.1| hypothetical protein LM5923_0615 [Listeria monocytogenes 08-5923] gi|284056430|gb|ADB67371.1| hypothetical protein LM5578_0616 [Listeria monocytogenes 08-5578] gi|284059521|gb|ADB70460.1| hypothetical protein LM5923_0615 [Listeria monocytogenes 08-5923] Length = 467 Score = 398 bits (1022), Expect = e-108, Method: Composition-based stats. Identities = 164/480 (34%), Positives = 242/480 (50%), Gaps = 27/480 (5%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 ++W R DLR+ DNKALY AC D ++ +F P Q+ + +AS+ Sbjct: 2 TSVMWFRRDLRVNDNKALYHACKEDD--LLLLFQVNPAQFIT---GSPSHQAFFASVAHF 56 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQ-RVTKLFYNRQYEINEVRRDKLLEKRL 127 ++ + + H F + IE K+++N +RD+ + Sbjct: 57 KQEVDK-----TAHLQIMFGEPIECFQQLKDTLPSWDKVYFNLDETGYGAKRDEAAQAFF 111 Query: 128 -QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 + ++ ++F DS L + + YK++TP+ K + + + + P Sbjct: 112 DEQKIEVQAFHDSYLHSAEEVKKSPTEYYKIFTPYYKKWREEIKETPFKMTLKPENIWKE 171 Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246 + P +F + P+ GE+ A L F K + Y + RD P + TS LS Sbjct: 172 SLFPKYEEQFAEMTCDL--PILDSGERAANTRLANFIKHDIADYDKARDFPELDKTSHLS 229 Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP 306 YL G +S R W L+E + G + EL WR+FY + +P+ +P Sbjct: 230 RYLRTGEISVRTIWQALQE------NEATEGRAIFEKELCWRDFYNMIYVSFPNQ-KNEP 282 Query: 307 FIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLL 366 IEW + +AW+ G TGFP++DAAMRQL GWMHNRLRM+TASFL KDLL Sbjct: 283 IQENYRFIEWENNREFFKAWQDGKTGFPLVDAAMRQLKETGWMHNRLRMVTASFLTKDLL 342 Query: 367 VDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIR 426 +DWR GE+YF L+D D ASN GGWQWAASTG D+VPYFRIFNPT Q ++FDP G FIR Sbjct: 343 IDWRFGEKYFQQMLIDYDPASNIGGWQWAASTGTDAVPYFRIFNPTTQSQKFDPTGKFIR 402 Query: 427 HWLPELNNVPTQYIHAPHSWLDKND------LSLNYPLPIVDHKKACHHTLNQYYAAKKQ 480 ++ EL N+P ++IH P + L +YP P++DHK+ + +Y +K+ Sbjct: 403 KYVKELANLPDKFIHQPEKMSEIEQKEYGLLLGKDYPFPLIDHKERRKLAIARYEFSKEH 462 >gi|282899861|ref|ZP_06307822.1| DNA photolyase, FAD-binding [Cylindrospermopsis raciborskii CS-505] gi|281195131|gb|EFA70067.1| DNA photolyase, FAD-binding [Cylindrospermopsis raciborskii CS-505] Length = 484 Score = 398 bits (1022), Expect = e-108, Method: Composition-based stats. Identities = 170/489 (34%), Positives = 237/489 (48%), Gaps = 20/489 (4%) Query: 1 MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHF 60 M T + L W R DLR +DN L A KV+ VF P Q I+ + + Sbjct: 1 MGYLTMSDLILFWHRRDLRTSDNTGLGVA-REKTKKVVGVFCLDPNILGQDDIAPARITY 59 Query: 61 IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120 + L ++ SQ G D+ + + + +F+N E RD Sbjct: 60 MIGCLKSLESLYSQAGSQLLILH----DNPVRAIPNLAEALEAKAVFWNWDVEPYAQIRD 115 Query: 121 KLLEKRLQHRVI--CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLP 178 + + L+ R I + D +L P +IL+ A Y VYTPF K + L Sbjct: 116 RDVTLALKTRGIETLEKNWDQLLHSPDTILSGAGTPYTVYTPFWKKWHSQPKVEPIEILA 175 Query: 179 VPAI------RLTGPVTPSNIPRFFDYPFQAIDPM-FPIGEQNALHILRKFCKEKVYYYV 231 + +P D F + GE A L F + Y Sbjct: 176 NCENLTAREEEIAEKSGVIKLPTARDLGFIWSGELILEPGEVAAWERLTDFLDCAIDEYE 235 Query: 232 EQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKP-KSGAFSWLNELIWREF 290 E+R+ PAI GTS LSP L GV+ R W + +E + +G +W EL WREF Sbjct: 236 EKRNYPAIDGTSLLSPALKFGVIGIRTIWQKTQELLAISNSQEFSNGIITWQKELAWREF 295 Query: 291 YRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMH 350 Y+H M +P + G + + W+ + QAW +G TG+PI+DAAMRQLN GWMH Sbjct: 296 YQHAMYHFPELAEG-AYRDVFKNFPWSDNQEHFQAWCEGKTGYPIVDAAMRQLNETGWMH 354 Query: 351 NRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFN 410 NR RMI ASFL KDL+++ + GE+YFM +L+DGDL++NNGGWQW+AS+G D P RIFN Sbjct: 355 NRCRMIVASFLTKDLIINPQWGEKYFMQKLIDGDLSANNGGWQWSASSGMDPKP-LRIFN 413 Query: 411 PTIQGKRFDPQGTFIRHWLPELNNVPTQY-IHAPHSWLDKNDLSLNYPLPIVDHKKACHH 469 P+ Q ++FD G +IRHW+ EL +V T+Y I + L++ + YP IVDHKK Sbjct: 414 PSSQAQKFDSDGEYIRHWVGELASVETEYLIGGNITPLERQSVG--YPTSIVDHKKQQAL 471 Query: 470 TLNQYYAAK 478 Y K Sbjct: 472 FKQLYQQQK 480 >gi|118497711|ref|YP_898761.1| deoxyribodipyrimidine photolyase [Francisella tularensis subsp. novicida U112] gi|194323683|ref|ZP_03057459.1| deoxyribodipyrimidine photolyase family protein [Francisella tularensis subsp. novicida FTE] gi|208779776|ref|ZP_03247120.1| deoxyribodipyrimidine photolyase family protein [Francisella novicida FTG] gi|118423617|gb|ABK90007.1| deoxyribodipyrimidine photolyase [Francisella novicida U112] gi|194322047|gb|EDX19529.1| deoxyribodipyrimidine photolyase family protein [Francisella tularensis subsp. novicida FTE] gi|208744231|gb|EDZ90531.1| deoxyribodipyrimidine photolyase family protein [Francisella novicida FTG] Length = 464 Score = 398 bits (1022), Expect = e-108, Method: Composition-based stats. Identities = 159/483 (32%), Positives = 247/483 (51%), Gaps = 30/483 (6%) Query: 6 AMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASL 65 + + + W R DLR+ DN ALY A + I +FI Q I + +++ SL Sbjct: 2 SKKIAIHWFRQDLRLADNPALYQASQADET--ITIFILDKNQ----DIGSASKLWLHHSL 55 Query: 66 LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125 + SL K ++ + +E + + +T ++NR Y+ + RD +++ Sbjct: 56 NSLNSSLDNK---LNFYSG----NPLEIIKKIIKENNITDFYWNRCYDKYSIDRDTQIKQ 108 Query: 126 RLQ-HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPA-IR 183 LQ H++ SF+ S+L+ P YKVYTPF K LI+ + P + +R Sbjct: 109 FLQQHKINVNSFNGSLLIEPWQCKKDDGTHYKVYTPFYKELIKIRKYRSNIAKPNFSYLR 168 Query: 184 LTGPVTPSNIPRFFD--YPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQG 241 + + + + +Q I + IGE + IL +F KV Y RD + Sbjct: 169 KLNNSENLDSLKLLEPKHSWQNIIKQWQIGESASHQILEEFLNNKVKEYKTARDFMSTDS 228 Query: 242 TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSV 301 TS+LSPYL G +SP Q +N ++ L + ++ EL+WR+F + + +YP + Sbjct: 229 TSKLSPYLHFGEISPSQIFNAVQ-----SLDYIGNNEEHFIKELVWRDFSYYQIYYYPEL 283 Query: 302 CMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFL 361 K + +W+ D LL+ W++G TG PI+DA MR+L G+MHNR+RMI ASFL Sbjct: 284 -HNKNINQKFDSFKWDNDPTLLKKWQKGQTGIPIVDAGMRELWQTGYMHNRVRMIVASFL 342 Query: 362 VKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQ 421 +K+ L+ W+ GE++F L D D ASNN WQW A G D+ PYFRIFNP +Q ++F+ Sbjct: 343 IKNCLIHWKYGEKWFFDTLFDADFASNNANWQWVAGCGLDAAPYFRIFNPVLQAEKFEAY 402 Query: 422 GTFIRHWLPELNNVPTQYIHAPHS----WLDKNDLSL--NYPLPIVDHKKACHHTLNQYY 475 +IR ++PEL +P + I P L + ++L NYP PIVD KK+ L + Sbjct: 403 -EYIRKYVPELKLLPNKLIAKPWEASELVLQEAGITLGQNYPKPIVDLKKSRDRALQLHN 461 Query: 476 AAK 478 K Sbjct: 462 QIK 464 >gi|167646881|ref|YP_001684544.1| deoxyribodipyrimidine photo-lyase [Caulobacter sp. K31] gi|167349311|gb|ABZ72046.1| Deoxyribodipyrimidine photo-lyase [Caulobacter sp. K31] Length = 478 Score = 397 bits (1021), Expect = e-108, Method: Composition-based stats. Identities = 164/475 (34%), Positives = 227/475 (47%), Gaps = 15/475 (3%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 +VWLRNDLR+ DN AL AA VI ++I E + ++ SL + Sbjct: 10 IVWLRNDLRLADNPALIAAAATG-RPVIPLYILD-ETPGVRPMGDASLWWLDKSLAALDA 67 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ-H 129 +L G + L+ + +NR Y+ + RD L+ L+ Sbjct: 68 ALRATGSRLILRRGPAR----AVLEEVVADAEAAAVVWNRLYDAASIERDSALKAWLKDE 123 Query: 130 RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLP----VPAIRLT 185 V C+SF+ +L P ++ N + Q YKV+TP+ +A L + P PA Sbjct: 124 GVACESFNAGLLNEPWTVKNGSGQPYKVFTPYWRAARDQLHDVHVEPAPKTLAAPAHWPH 183 Query: 186 GPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245 G + ++ GE AL L F V Y +RD P ++ TS+L Sbjct: 184 GDALEDWTLHPALLDWSTGFDLWTPGEAGALARLDDFLSGPVQDYGHKRDFPGVEATSRL 243 Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305 SP+L G + PRQ W + P +L+E+ WREF ++ P + Sbjct: 244 SPHLHFGEIGPRQVWAAARHAAE-AGDAPAGQVEKFLSEIGWREFNHSILFHNPDLP-HT 301 Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365 F P + W K+ +AW +G TG+PI+DA MR+L G+MHNR+RMI ASFLVK L Sbjct: 302 SFRPEFDGFPWVKNPAAFEAWSRGQTGYPIVDAGMRELWATGFMHNRVRMIVASFLVKHL 361 Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425 L+DWR GE +F L+D DLASN G WQW A G D+ PYFRIFNP QG++FDP G ++ Sbjct: 362 LIDWREGEAWFWDTLVDADLASNVGNWQWVAGGGADAAPYFRIFNPIAQGQKFDPAGAYV 421 Query: 426 RHWLPELNNVPTQYIHAPHSWLDKNDLSLN--YPLPIVDHKKACHHTLNQYYAAK 478 R W+PEL +P IH P + YP PIV H A L Y K Sbjct: 422 RRWVPELAKLPDALIHEPWKASPDPGAAAARIYPEPIVGHPAARERALEAYRGLK 476 >gi|186473227|ref|YP_001860569.1| deoxyribodipyrimidine photo-lyase [Burkholderia phymatum STM815] gi|184195559|gb|ACC73523.1| Deoxyribodipyrimidine photo-lyase [Burkholderia phymatum STM815] Length = 504 Score = 397 bits (1020), Expect = e-108, Method: Composition-based stats. Identities = 175/500 (35%), Positives = 251/500 (50%), Gaps = 38/500 (7%) Query: 10 HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWR------------QHGISARQ 57 LVW R DLR DN ALY A + + +V F+ + + + Sbjct: 14 GLVWFRRDLRTGDNAALYYALRHCE-RVWCAFVFDTTILQPLINWAHRRNAHAGKVQDAR 72 Query: 58 SHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEV 117 FI AS+ ++ +SL + G D ++ + Q V +F N YE + + Sbjct: 73 IEFILASVEELDRSLEEGGGALIVLHG----DPVDAIPKLAAQLPVDAVFTNHDYEPSAI 128 Query: 118 RRDKLLEKRLQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRS 176 RD+ + RL+ +F D V+ +LN + + V+TP++ A ++ L DL+ Sbjct: 129 ERDETVADRLRADGRRLLTFKDQVIFERDELLNGQRKPFAVFTPYKNAWLKQLTPFDLKP 188 Query: 177 LPVPAIRLTGPVTP----SNIPRFFDYPF---QAIDPMFPIGEQNALHILRKFCKEKVYY 229 PV + P P F + + G A L F ++ Sbjct: 189 YPVERYSQSLARPPRTLDHAWPTLAKMGFAPGKLAETELQAGMSGAQARLEDFLT-RIDS 247 Query: 230 YVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWRE 289 Y E+RD+PA +GTS LS +L G +S R E L GA +WL+ELIWR+ Sbjct: 248 YAERRDLPAARGTSHLSVHLRFGTVSIRTLARLAHEM---SLRPGGQGAATWLSELIWRD 304 Query: 290 FYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSH---LLQAWKQGYTGFPIIDAAMRQLNTI 346 FY ++A +P + + F + + W L AW G TG+P++DAAM QLN Sbjct: 305 FYFMILAHHPHIAKRESFKREFDALRWETGKDADALFAAWCDGRTGYPLVDAAMLQLNRT 364 Query: 347 GWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYF 406 G+MHNRLRM+TASFLVKDL +DWR GE YF +L D D ++NNGGWQWAASTG D+ P+F Sbjct: 365 GFMHNRLRMVTASFLVKDLGIDWRRGERYFEEKLNDFDFSANNGGWQWAASTGCDAQPWF 424 Query: 407 RIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKN------DLSLNYPLPI 460 RIFNP Q ++FD QG FI+ +LPEL VP ++IHAP + L +YP P+ Sbjct: 425 RIFNPVTQSEKFDSQGLFIKRFLPELGKVPAKWIHAPWQADPDDLEDWGVVLGKDYPHPV 484 Query: 461 VDHKKACHHTLNQYYAAKKQ 480 V+H KA TL +Y + + Sbjct: 485 VEHAKARQQTLARYGVLRSR 504 >gi|254374529|ref|ZP_04990010.1| deoxyribodipyrimidine photolyase [Francisella novicida GA99-3548] gi|151572248|gb|EDN37902.1| deoxyribodipyrimidine photolyase [Francisella novicida GA99-3548] gi|332678425|gb|AEE87554.1| Deoxyribodipyrimidine photolyase [Francisella cf. novicida Fx1] Length = 464 Score = 397 bits (1020), Expect = e-108, Method: Composition-based stats. Identities = 158/483 (32%), Positives = 243/483 (50%), Gaps = 30/483 (6%) Query: 6 AMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASL 65 + + + W R DLR+ DN ALY A + I +FI Q I + +++ SL Sbjct: 2 SKKIAIHWFRQDLRLADNPALYQASQADET--ITIFILDKNQ----DIGSASKLWLHHSL 55 Query: 66 LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125 + SL K ++ + +E + + +T ++NR Y+ + RD +++ Sbjct: 56 NSLNSSLDNK---LNFYSG----NPLEIIKKIIKENNITDFYWNRCYDKYSIDRDTQIKQ 108 Query: 126 RLQ-HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPA--I 182 LQ H++ SF+ S+L+ P YKVYTPF K LI+ + P + Sbjct: 109 FLQQHKINVNSFNGSLLIEPWQCKKDDGTHYKVYTPFYKELIKIRKYRSNIAKPNFSYLR 168 Query: 183 RLTGPVTPSNIPRF-FDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQG 241 +L ++ + +Q I + IGE + IL +F KV Y RD + Sbjct: 169 KLNNSENLDSLKLLQPKHSWQNIIKQWQIGESASHQILEEFLDNKVKEYKTARDFMSTDS 228 Query: 242 TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSV 301 TS+LSPYL G +SP Q +N ++ L + ++ EL+WR+F + + +YP + Sbjct: 229 TSKLSPYLHFGEISPNQIFNAVQ-----SLDYIGNNEEHFIKELVWRDFSYYQIYYYPEL 283 Query: 302 CMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFL 361 K + +W+ D LL+ W++G TG PI+DA MR+L G+MHNR+RMI ASFL Sbjct: 284 -HNKNINQKFDSFKWDNDPTLLKKWQKGQTGIPIVDAGMRELWQTGYMHNRVRMIVASFL 342 Query: 362 VKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQ 421 +K+ L+ W+ GE++F L D D ASNN WQW A G D+ PYFRIFNP +Q ++F+ Sbjct: 343 IKNCLIHWKYGEKWFFDTLFDADFASNNANWQWVAGCGLDAAPYFRIFNPVLQAEKFEAY 402 Query: 422 GTFIRHWLPELNNVPTQYIHAPHSWLD------KNDLSLNYPLPIVDHKKACHHTLNQYY 475 +IR ++PEL +P + I P + L NYP PIVD KK+ L + Sbjct: 403 -EYIRKYVPELKLLPNKLIAKPWEASELVLKEAGITLGQNYPKPIVDLKKSRDRALQLHN 461 Query: 476 AAK 478 K Sbjct: 462 QIK 464 >gi|55377670|ref|YP_135520.1| deoxyribodipyrimidine photolyase [Haloarcula marismortui ATCC 43049] gi|55230395|gb|AAV45814.1| deoxyribodipyrimidine photolyase [Haloarcula marismortui ATCC 43049] Length = 465 Score = 397 bits (1020), Expect = e-108, Method: Composition-based stats. Identities = 157/474 (33%), Positives = 229/474 (48%), Gaps = 16/474 (3%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 + L W R DLR TDN L AA + V+ VFI + F+ +L + Sbjct: 1 MRLHWHRRDLRATDNAGLAAATPSD--PVVPVFIFDTAVLD--HAGPPRVAFMLDALDSL 56 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128 ++ KG + D L Q K+ + + Y RD + + L Sbjct: 57 REWYRDKGSDLVVAEG----DPTSVLPELAAQHGAEKVTWGKDYSGLARERDAAVRQALD 112 Query: 129 HRVICKS-FDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187 + + ++VL PG I + Y V+T F + P+ Sbjct: 113 DADVAREAVQNAVLHEPGEITTNDGDPYSVFTYFGRKWHDR---EKAAPYDPPSADTLAD 169 Query: 188 VTPSNIPRFFDYPFQAIDPMFPI-GEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246 V +P D F+ + P G + A +L F E VY Y E+RD PA + TS+LS Sbjct: 170 VDGDALPTLADLGFEEPEADVPAAGTEEARALLDDFLDENVYEYEERRDFPADECTSRLS 229 Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP 306 +L G + R+ ++R + + + ++L WREFY ++ +P V Sbjct: 230 AHLKFGTIGIREVYDRTQAAKEGTGGDRRDSVREFQSQLAWREFYTQVLFAHPHVVSSN- 288 Query: 307 FIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLL 366 + + IEW D LLQAWK G TG+PI+DA MRQL +MHNR+RMI ASFL KDLL Sbjct: 289 YKSYENPIEWENDEELLQAWKDGDTGYPIVDAGMRQLRDEAYMHNRVRMIVASFLTKDLL 348 Query: 367 VDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIR 426 +DWR G E+F +L+D D A++NGGWQWAASTG D+ PYFRIFNP QG+ +DP +I+ Sbjct: 349 IDWRHGYEWFREKLVDHDTANDNGGWQWAASTGTDAQPYFRIFNPMTQGEDYDPNAEYIK 408 Query: 427 HWLPELNNVPTQYIHAPH--SWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478 ++PEL + + IH + S + + YP P+VDH + L + A+ Sbjct: 409 EYVPELRDAAPEIIHDWNDCSLTQRRSAAPEYPDPVVDHSERREEALAMFERAR 462 >gi|146412189|ref|XP_001482066.1| hypothetical protein PGUG_05829 [Meyerozyma guilliermondii ATCC 6260] Length = 607 Score = 397 bits (1020), Expect = e-108, Method: Composition-based stats. Identities = 155/488 (31%), Positives = 249/488 (51%), Gaps = 23/488 (4%) Query: 14 LRNDLRITDNKALYAACHNS---DAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 D R +DN L AA + + ++ +++ + HG+S Q + SL +++ Sbjct: 119 FLRDFRQSDNTGLNAASRMAAKENLPLVCLYVLCRDDLFAHGVSGFQLEYRLRSLELLRE 178 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLL-EKRLQH 129 L+QK I + + + + Q +++ LF N +YE++E+RR L ++ L+ Sbjct: 179 ELAQKNIPLVFLNVDERKEVVPIVKEKAQQLKISHLFANIEYEVDELRRYTNLCKELLKA 238 Query: 130 RVICKSFDDSVLLPPGSILNHA-LQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188 + + +D+ L PG+I+ + + V+TP+ +A +L + Sbjct: 239 DISFQPHNDTTLAVPGTIVTKSKGTQFSVFTPWYRAWCAHLNKMKDPFQVRAKPEANSDE 298 Query: 189 TPSNIPRFFDYPF--------------QAIDPMFPIGEQNALHILRKFC-KEKVYYYVEQ 233 FD +A + GE A L+ F ++ Y Sbjct: 299 FRQRNSHLFDLKIPQAPPGKQLTEKQKEAFEKYHKPGENAAWDDLQDFITSGRIKRYNVD 358 Query: 234 RDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEE-FVDLLIKPKSGAFSWLNELIWREFYR 292 R+ P++ G S++S + + G ++ R L + + + GA W ++ WR+FYR Sbjct: 359 RNDPSVNGVSRMSVHFASGTINARTVIRSLLDHKLLRTIDSGNDGAREWARQVAWRDFYR 418 Query: 293 HLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNR 352 H++ +P +CM KPFI ++++W +S + W QG TG+PI+DAAMRQL +G++HNR Sbjct: 419 HVLCNWPHICMFKPFISNMDEVKWEYNSDHFERWCQGKTGYPIVDAAMRQLLEMGYLHNR 478 Query: 353 LRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPT 412 +RM+ ASFL K L++DWR GE YF+ L DGD SNNGGW +++S G D PYFRIFNP Sbjct: 479 VRMVVASFLSKHLMIDWREGERYFLENLADGDFPSNNGGWGFSSSVGVDPQPYFRIFNPW 538 Query: 413 IQGKRFDPQGTFIRHWLPELNNV-PTQYIHAPHSWLDKNDLSLN-YPLPIVDHKKACHHT 470 Q ++FD +G +IR WLPEL + + IH P+ + N YP PIVDHK A Sbjct: 539 TQAEKFDKKGDYIRKWLPELREIQDVKGIHNPYENGYRQIAEKNGYPPPIVDHKTARERA 598 Query: 471 LNQYYAAK 478 L +Y AK Sbjct: 599 LERYKEAK 606 >gi|239817579|ref|YP_002946489.1| deoxyribodipyrimidine photo-lyase [Variovorax paradoxus S110] gi|239804156|gb|ACS21223.1| Deoxyribodipyrimidine photo-lyase [Variovorax paradoxus S110] Length = 515 Score = 397 bits (1020), Expect = e-108, Method: Composition-based stats. Identities = 172/489 (35%), Positives = 252/489 (51%), Gaps = 30/489 (6%) Query: 10 HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69 L+W R DLR+ DN ALY A +V+ VF+ R+ FI SL++++ Sbjct: 15 GLMWFRRDLRVDDNAALYHALRAC-RQVVCVFVFDRAILDPLPRIDRRVEFIRESLVELE 73 Query: 70 KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH 129 + L +IE + + V +F NR E + + RD + L + Sbjct: 74 EELRALSGGLIVRHA----HAIEEIPALAHSLDVQAVFANRDDEPDALARDAQVLGALAN 129 Query: 130 RVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188 + ++ DS + +LN Q Y V+TP+++A + + L+ PV + Sbjct: 130 AGVSFYTYKDSTVFERDELLNKTGQPYTVFTPYKRAWLAKVDAFFLKPYPVRSHADALAP 189 Query: 189 TPSNIPR----FFDYPFQAIDPM---FPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQG 241 P+ D F + P G Q A + F + ++ Y R+ PA++G Sbjct: 190 PPAAHRTPAPSLEDLGFGRSNLSELGIPTGSQGAAALFEDFFQ-RIDRYDAARNFPAVRG 248 Query: 242 TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSV 301 S L +L G +S RQ + L ++ +GA +WL ELIWREFY ++ +P V Sbjct: 249 PSYLGVHLRFGTVSIRQLAGVAHQ----LFLQGDAGAAAWLGELIWREFYFQILVHFPHV 304 Query: 302 CMG---KPFIPWTEKIEWNK---DSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRM 355 G K F P +KI+W+ L +AW QG TG+P++DAAM Q+N G+MHNRLRM Sbjct: 305 HSGGESKSFRPEYDKIQWHHGKHADQLFEAWCQGRTGYPLVDAAMLQINQSGYMHNRLRM 364 Query: 356 ITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQG 415 + ASFL KDL +DWR GE YF L D +LASNNG WQWA+S+G D+ P+FRIFNP Q Sbjct: 365 VVASFLCKDLGLDWRRGERYFALHLNDFELASNNGNWQWASSSGCDAQPWFRIFNPVTQS 424 Query: 416 KRFDPQGTFIRHWLPELNNVPTQYIHAPHSW----LDKNDLSLN--YPLPIVDHKKACHH 469 +RFDP+G FIR +LP+L + IHAP + L+ + L YP P+VDH +A Sbjct: 425 ERFDPEGKFIRRYLPQLAGLSNAAIHAPWTASPVELEAAGIKLGETYPRPVVDHAEAREQ 484 Query: 470 TLNQYYAAK 478 T+ +Y A + Sbjct: 485 TMRRYAAVR 493 >gi|119509710|ref|ZP_01628855.1| deoxyribopyrimidine photolyase [Nodularia spumigena CCY9414] gi|119465576|gb|EAW46468.1| deoxyribopyrimidine photolyase [Nodularia spumigena CCY9414] Length = 482 Score = 397 bits (1019), Expect = e-108, Method: Composition-based stats. Identities = 162/478 (33%), Positives = 233/478 (48%), Gaps = 18/478 (3%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 L W R DLRI+DN L AA S AKV+ VF P+ + ++ + ++ L +Q+ Sbjct: 6 LFWHRRDLRISDNTGLVAARERS-AKVVGVFCLDPQILSRDDVAPARVTYMMGCLQALQQ 64 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130 +Q G + +E + + +F+N E RD+ + L+ Sbjct: 65 RYAQVGSQLLILHG----NPVEVIPALAKALNAKAVFWNWDVEPYSQTRDRTIIDILKSN 120 Query: 131 VI--CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPA------I 182 I D +L P I Y VY+PF K + +L A Sbjct: 121 SIEFLHENWDQILHAPDEIRTGTKSPYTVYSPFWKNWSSKPKAKSVETLQNAAGLTEAEQ 180 Query: 183 RLTGPVTPSNIPRFFDYPFQAIDPM-FPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQG 241 + +P D F + GE A L++F + Y EQR++P + G Sbjct: 181 EIAKQAGVIPLPTARDLGFIWDGELSISPGEAAAQERLQEFTDSAITEYQEQRNLPGVDG 240 Query: 242 TSQLSPYLSIGVLSPRQCWNRLKEEFV-DLLIKPKSGAFSWLNELIWREFYRHLMAFYPS 300 TS+LS L GV+ RQ W E + + +W EL WREFY+H M +P Sbjct: 241 TSRLSAALKFGVIGIRQVWEATLEAQEFSRSEETAASIRTWQQELAWREFYQHAMYNFPE 300 Query: 301 VCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASF 360 + G + + W + QAW +G TG+PI+DAAMRQLN +GWMHNR RMI ASF Sbjct: 301 LAEG-AYRDTFKNFPWQNNDEYFQAWCEGRTGYPIVDAAMRQLNEMGWMHNRCRMIVASF 359 Query: 361 LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDP 420 L KDL+++ ++GE+YFM +L+DGDL++NNGGWQW+ S+G D P RIFNP Q ++FD Sbjct: 360 LTKDLMINPQLGEKYFMQKLIDGDLSANNGGWQWSTSSGMDPKP-LRIFNPASQAQKFDG 418 Query: 421 QGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478 +G +IR W+ EL +V T+Y+ + S+ YP PIVDHK Y K Sbjct: 419 EGEYIRQWVSELRSVDTEYLVTGKIPPLELQ-SIGYPAPIVDHKVQQGLFKKMYQQQK 475 >gi|37725011|gb|AAO23972.1| cryptochrome 2B [Pisum sativum] Length = 597 Score = 397 bits (1019), Expect = e-108, Method: Composition-based stats. Identities = 137/481 (28%), Positives = 228/481 (47%), Gaps = 23/481 (4%) Query: 6 AMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASL 65 M+ +VW R DLRI DN AL AA D V VFI P++ Q ++ SL Sbjct: 2 GMNRTIVWFRRDLRIEDNPALAAAAR--DGSVFPVFIWCPKEEGQFYPGRVSRWWMKQSL 59 Query: 66 LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125 + + +SL G + D +++ L + TK+ +N Y+ + RD +++ Sbjct: 60 VHLDQSLKSLGAGLVIIKT---DSTLKALLECVNAVQATKVVFNHLYDPVSLVRDHNIKE 116 Query: 126 RL-QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL 184 +L + V +S++ +L P I + + + + PF + ++ P I Sbjct: 117 KLVEQGVSVQSYNGDLLYEPWEIFDESGHAFTTFDPFWNTCLHMQMKTYSPIPPCQLILA 176 Query: 185 TGPVTPSNIPRF------FDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPA 238 G V +I + ++ + G + L +F + + +Y R Sbjct: 177 QGKVEKHSIEQLGLEDELEKSSNSSLGRSWSPGWSKSDKALAEFIENYLLHYSGNRLNLG 236 Query: 239 IQGTSQLSPYLSIGVLSPRQCWNRLKEEF----VDLLIKPKSGAFSWLNELIWREFYRHL 294 TS LSPY+ G LS R+ + + + + I + A +L + +RE+ R+L Sbjct: 237 GDSTSLLSPYIHFGELSVRKVFQLARTKQILWTHEGNIIGEESATLFLRAIGFREYSRYL 296 Query: 295 MAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLR 354 +P + +P + + WN D +AW+QG TG+P++DA MR+L GW+HN++R Sbjct: 297 CFSFP-FTLERPLLGNLKFFPWNNDPSNFKAWRQGRTGYPLVDAGMRELWATGWIHNKMR 355 Query: 355 MITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQ 414 +I +SF VK LL+ W+ G +YF LLD DL S+ GWQ+ + + D R+ +P + Sbjct: 356 VIVSSFAVKMLLIPWKWGMKYFWDTLLDADLESDILGWQYISGSLPDGHKLERLDDPEVL 415 Query: 415 GKRFDPQGTFIRHWLPELNNVPTQYIHAPHSW------LDKNDLSLNYPLPIVDHKKACH 468 G+++DP G +IR WLPEL +P ++IH P +L NYP PI+D A Sbjct: 416 GRKYDPAGEYIRQWLPELARMPAEWIHHPWDAPLTVLTASGVELGQNYPKPIIDIDLARE 475 Query: 469 H 469 Sbjct: 476 Q 476 >gi|29467481|dbj|BAC67179.1| cryptochrome 2 [Armoracia rusticana] Length = 617 Score = 397 bits (1019), Expect = e-108, Method: Composition-based stats. Identities = 138/500 (27%), Positives = 226/500 (45%), Gaps = 29/500 (5%) Query: 7 MSVH---LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYA 63 M+ + +VW R DLRI DN AL AA H V VFI PE+ Q ++ Sbjct: 1 MTTNKKTIVWFRRDLRIEDNPALAAAAHEG--SVFPVFIWCPEEEGQFYPGRASRWWMKQ 58 Query: 64 SLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLL 123 SL + +SL G + N ++ + TK+ ++ Y+ + RD + Sbjct: 59 SLAHLSQSLKALGSELTLIKTHN---TVSAILDCIRVTGATKVVFDHLYDPVSLVRDHTV 115 Query: 124 EKRLQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAI 182 +++L I +SF+ +L P I + + +++ + K + +++ + P Sbjct: 116 KEKLVELGISVQSFNGDLLYEPWEIYCEKGKHFTIFSSYWKKCLDMSIESVMLPPPWRLR 175 Query: 183 RLTGPVTPSNIPRFFDYPFQA---------IDPMFPIGEQNALHILRKFCKEKVYYYVEQ 233 +T + + + + G NA IL +F +++ YY + Sbjct: 176 PITAAADAVWACSIEELGLENDAEKPSNALLTRAWSPGWSNADKILNEFIDKQLIYYAKN 235 Query: 234 RDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEF----VDLLIKPKSGAFSWLNELIWRE 289 TS LSPYL G +S R+ + + + D + + +L + RE Sbjct: 236 SKKVVGNSTSLLSPYLHYGEISVRRVFQCARMKQIIWARDKNSEGEESTDLFLKGIGLRE 295 Query: 290 FYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWM 349 + R++ +P + + W+ D +AW+QG TG+P++DA MR+L GWM Sbjct: 296 YSRYICFNFP-FTHEQSLLSHLRFFPWDTDVDKFKAWRQGRTGYPLVDAGMRELWATGWM 354 Query: 350 HNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIF 409 HNR+R+I +SF VK LL+ W+ G +YF LLD DL + GWQ+ + + D R+ Sbjct: 355 HNRIRVIVSSFAVKFLLLPWKWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELDRLD 414 Query: 410 NPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSW------LDKNDLSLNYPLPIVDH 463 NP IQG FDP+G +IR WLPEL +PT++IH P +L NY PIVD Sbjct: 415 NPAIQGANFDPEGEYIRQWLPELVRLPTEWIHHPWDAPLTVLKASGVELGTNYAKPIVDI 474 Query: 464 KKACHHTLNQYYAAKKQSLL 483 A ++ ++ Sbjct: 475 DTARELLTKAISRTREAQIM 494 >gi|328675930|gb|AEB28605.1| Deoxyribodipyrimidine photolyase [Francisella cf. novicida 3523] Length = 464 Score = 397 bits (1019), Expect = e-108, Method: Composition-based stats. Identities = 157/483 (32%), Positives = 245/483 (50%), Gaps = 30/483 (6%) Query: 6 AMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASL 65 + V + W R DLR+ DN ALY A + I +FI Q I +++ SL Sbjct: 2 SKKVAIHWFRQDLRLADNPALYHASQADET--ITIFILDENQ----DIGGASKLWLHHSL 55 Query: 66 LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125 + +SL+ K ++ + +E + + +VT ++NR Y+ + RD +++ Sbjct: 56 NNLNRSLNDK---LNFYNG----NPLEIIKKLIKENKVTDFYWNRCYDKYSINRDTQIKQ 108 Query: 126 RLQHR-VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQ--NLVQADLRSLPVPAI 182 LQ + + SF+ S+L+ P YKVYTPF K LI+ +++ I Sbjct: 109 FLQEQSINVNSFNGSLLIEPWQCKKDDGTHYKVYTPFYKELIKIRKYQPNIKKAVFSRLI 168 Query: 183 RLTGPVTPSNIPRFF-DYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQG 241 +L T ++ +Q I + +GE+ A +L +F K+ Y RD + Sbjct: 169 KLASSDTLDSLKLLEPKLTWQNIIKQWQVGEKAAAQLLEQFLTTKIKDYKIARDYMSTDA 228 Query: 242 TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSV 301 TS LSPYL G +SP Q +N ++ L + ++ EL+WR+F + + +YP + Sbjct: 229 TSTLSPYLHFGEISPNQIFNAVQ-----SLDSIGNNEEHFIKELVWRDFSYYQIYYYPEL 283 Query: 302 CMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFL 361 K + W+ ++ LL+ W++G TG PI+DA MRQL G+MHNR+RMI ASFL Sbjct: 284 -HNKNINQKFDNFAWDNNATLLKKWQKGQTGIPIVDAGMRQLWQTGYMHNRVRMIVASFL 342 Query: 362 VKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQ 421 +K+ L+ W+ GE++F L D D ASNN WQW A G D+ PYFRIFNP +Q ++F+ Sbjct: 343 IKNCLIHWKYGEKWFFDTLFDADFASNNANWQWVAGCGLDAAPYFRIFNPVLQAEKFEAY 402 Query: 422 GTFIRHWLPELNNVPTQYIHAPHS----WLDKNDL--SLNYPLPIVDHKKACHHTLNQYY 475 +IR ++PEL +P + I P L + + NYP PIVD K + L + Sbjct: 403 -EYIRKYVPELKLLPNKLIAKPWEASELVLQEAGIILGQNYPRPIVDLKNSRDKALQLHN 461 Query: 476 AAK 478 K Sbjct: 462 QIK 464 >gi|261876461|dbj|BAI47556.1| cryptochrome2 [Glycine max] Length = 634 Score = 396 bits (1018), Expect = e-108, Method: Composition-based stats. Identities = 137/477 (28%), Positives = 226/477 (47%), Gaps = 23/477 (4%) Query: 10 HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69 +VW R DLRI DN AL AA V+ V++ P++ Q ++ SL + Sbjct: 6 TIVWFRRDLRIEDNPALAAAAKEG--SVLPVYVWCPKEEGQFYPGRVSRWWLKQSLAHLD 63 Query: 70 KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL-Q 128 +SL G + + + L + TK+ +N Y+ + RD ++++L + Sbjct: 64 QSLKSLGSRLVLIKTHSTAVA---LVECVKAIQATKVVFNHLYDPVSLVRDHNIKEKLVE 120 Query: 129 HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188 + +S++ +L P + + + + + + F K + + P I G + Sbjct: 121 QGISVQSYNGDLLYEPWEVNSESGRAFTTFNAFWKKCLHMQMDIVSVVPPWQLIPAEGKI 180 Query: 189 TPSNIPRF-----FDYPFQAI-DPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGT 242 ++ + P A+ + G +NA LR+F + + +Y ++R + T Sbjct: 181 EECSLEELGLENESEKPSNALLGRAWSPGWRNADKALREFVELHLLHYSKKRLKVGGEST 240 Query: 243 SQLSPYLSIGVLSPRQCWNRLKEEF----VDLLIKPKSGAFSWLNELIWREFYRHLMAFY 298 S LSPYL G LS R+ + + + + A +L + RE+ R+L + Sbjct: 241 SLLSPYLHFGELSARKVFQVTCMKQILWTNEGNSAGEESANLFLRAIGLREYSRYLCFNF 300 Query: 299 PSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITA 358 P + + + WN D + + W+QG TGFP++DA MR+L GW+HNR+R+I + Sbjct: 301 P-FTHERALLGHLKFFPWNPDPDIFKTWRQGRTGFPLVDAGMRELWATGWIHNRIRVIVS 359 Query: 359 SFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRF 418 SF VK LL+ W+ G +YF LLD DL S+ GWQ+ + D R+ NP IQG +F Sbjct: 360 SFAVKMLLLPWKWGMKYFWDTLLDADLESDILGWQYISGGLPDGHELERLDNPEIQGAKF 419 Query: 419 DPQGTFIRHWLPELNNVPTQYIHAPHSW------LDKNDLSLNYPLPIVDHKKACHH 469 DP+G ++R WLPEL +PT++IH P +L NYP PI+D A Sbjct: 420 DPEGEYVRQWLPELARMPTEWIHHPWDAPLTVLRAAGVELGQNYPKPIIDIDLARER 476 >gi|89199718|gb|ABD63262.1| cryptochrome 2 [Glycine max] Length = 634 Score = 396 bits (1018), Expect = e-108, Method: Composition-based stats. Identities = 137/477 (28%), Positives = 226/477 (47%), Gaps = 23/477 (4%) Query: 10 HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69 +VW R DLRI DN AL AA V+ V++ P++ Q ++ SL + Sbjct: 6 TIVWFRRDLRIEDNPALTAAAKEG--SVLPVYVWCPKEEGQFYPGRVSRWWLKQSLAHLD 63 Query: 70 KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL-Q 128 +SL G + + + L + TK+ +N Y+ + RD ++++L + Sbjct: 64 QSLKSLGSRLVLIKTHSTAVA---LVECVKAIQATKVVFNHLYDPVSLVRDHNIKEKLVE 120 Query: 129 HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188 + +S++ +L P + + + + + + F K + + P I G + Sbjct: 121 QGISVQSYNGDLLYEPWEVNSESGRAFTTFNAFWKKCLHMQMDIVSVVPPWQLIPAEGKI 180 Query: 189 TPSNIPRF-----FDYPFQAI-DPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGT 242 ++ + P A+ + G +NA LR+F + + +Y ++R + T Sbjct: 181 EECSLEELGLENESEKPSNALLGRAWSPGWRNADKALREFVELHLLHYSKKRLKVGGEST 240 Query: 243 SQLSPYLSIGVLSPRQCWNRLKEEF----VDLLIKPKSGAFSWLNELIWREFYRHLMAFY 298 S LSPYL G LS R+ + + + + A +L + RE+ R+L + Sbjct: 241 SLLSPYLHFGELSARKVFQVTCMKQILWTNEGNSAGEESANLFLRAIGLREYSRYLCFNF 300 Query: 299 PSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITA 358 P + + + WN D + + W+QG TGFP++DA MR+L GW+HNR+R+I + Sbjct: 301 P-FTHERALLGHLKFFPWNPDPDIFKTWRQGRTGFPLVDAGMRELWATGWIHNRIRVIVS 359 Query: 359 SFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRF 418 SF VK LL+ W+ G +YF LLD DL S+ GWQ+ + D R+ NP IQG +F Sbjct: 360 SFAVKMLLLPWKWGMKYFWDTLLDADLESDILGWQYISGGLPDGHELERLDNPEIQGAKF 419 Query: 419 DPQGTFIRHWLPELNNVPTQYIHAPHSW------LDKNDLSLNYPLPIVDHKKACHH 469 DP+G ++R WLPEL +PT++IH P +L NYP PI+D A Sbjct: 420 DPEGEYVRQWLPELARMPTEWIHHPWDAPLTVLRAAGVELGQNYPKPIIDIDLARER 476 >gi|297180123|gb|ADI16346.1| deoxyribodipyrimidine photolyase [uncultured bacterium HF130_01F24] Length = 478 Score = 396 bits (1017), Expect = e-108, Method: Composition-based stats. Identities = 161/494 (32%), Positives = 248/494 (50%), Gaps = 29/494 (5%) Query: 1 MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHF 60 M + T +VW R DLR+ DN AL A S +V+ ++I + + + Sbjct: 1 MASDTK---SIVWFRQDLRLQDNPALEFAA--SVGEVLPIYIVDEKNAADWRLGRASQWW 55 Query: 61 IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120 + SL + +S++ C D + ++ + ++ +F+NR YE +V RD Sbjct: 56 LNESLRSLNESMNGAL-------CLYRGDPLGIIEKLITEHSISNIFWNRCYEPWQVLRD 108 Query: 121 KLLEKRLQH-RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPV 179 K ++ ++ +SF+ +L P I YKV+TPF K + V Sbjct: 109 KTIKSEVRKFGAKARSFNGFLLNEPWEIAKSDGTPYKVFTPFYKQSRLKGTPREASIDYV 168 Query: 180 PAIRLTG------PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQ 233 IR + N+ D+ + + + GE+ +L+ F + + Y Sbjct: 169 SKIRFVSNSKKNREIDSLNLLNENDWSTE-MASRWTPGERGGEQVLKLFLERGLCNYKIG 227 Query: 234 RDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRH 293 RD P + S+LSPYL G LSP W+++ +L ++ A + EL+WREF Sbjct: 228 RDFPDKEAVSRLSPYLHFGELSPNYVWHKV--NNFAVLENIETQAEHFHRELVWREFSYS 285 Query: 294 LMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRL 353 L+ ++P + + + W K+ ++ W+ G TG+P+IDA MR+L + G+MHNR+ Sbjct: 286 LIHYFPDLTY-RNLNRRFDDFPWKKNDQFMKKWRTGMTGYPLIDAGMRELASTGYMHNRV 344 Query: 354 RMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTI 413 RMITASFLVK+LL+DWR G E+F L+D DLA+N+ WQW A +G D+ PYFRIFNP Sbjct: 345 RMITASFLVKNLLIDWRNGAEWFWDSLIDADLANNSCSWQWVAGSGADAAPYFRIFNPVT 404 Query: 414 QGKRFDPQGTFIRHWLPELNNVPTQYIH----APHSWLDKNDLSLN--YPLPIVDHKKAC 467 Q K+FDP +IR W+ EL P +YIH AP S L + L+ YP IVD K + Sbjct: 405 QSKKFDPDAKYIRRWITELEKCPNKYIHDPSSAPESELQHFGIKLDQTYPSAIVDLKTSR 464 Query: 468 HHTLNQYYAAKKQS 481 L Y + K +S Sbjct: 465 EAALRAYQSLKGRS 478 >gi|242092996|ref|XP_002436988.1| hypothetical protein SORBIDRAFT_10g013750 [Sorghum bicolor] gi|241915211|gb|EER88355.1| hypothetical protein SORBIDRAFT_10g013750 [Sorghum bicolor] Length = 654 Score = 396 bits (1017), Expect = e-108, Method: Composition-based stats. Identities = 136/492 (27%), Positives = 223/492 (45%), Gaps = 30/492 (6%) Query: 10 HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69 +VW R DLRI DN AL AA V+ +FI P + Q+ ++ SL + Sbjct: 7 TVVWFRRDLRIHDNPALAAAAKEG--SVLPLFIWCPADYEQYYPGRCSRWWLKQSLAHLG 64 Query: 70 KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL-Q 128 KSL G + D ++ L T++ YNR Y+ + D ++ L Sbjct: 65 KSLELLGCPLVLIRAE--DSTLATLLECVHCISATRVVYNRLYDPISLVLDDKIKNELSA 122 Query: 129 HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188 H + +SF+ +L P + + Q + + + + + ++ P + G + Sbjct: 123 HGISVQSFNGDLLYEPWDVYDENGQAFTSFNKYWEKCMNVPIEISQYLAPTRLVAAPG-L 181 Query: 189 TPSNIPRFFDYPFQA----------IDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPA 238 D ++ + + G +NA ++L +F + Y + Sbjct: 182 ANVRCCSIDDLGLESSKDVESSNALLSRAWSPGWRNAENMLEEFLSCGLLEYSKHGMKVG 241 Query: 239 IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFS----WLNELIWREFYRHL 294 TS LSPYL G LS R+ + + V + KS A +L + +RE+ R+L Sbjct: 242 GTTTSLLSPYLHFGELSVRKVYQLVTMHHVKWQNEGKSEAEESVRLFLRSIGFREYSRYL 301 Query: 295 MAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLR 354 +P + F+ + W D ++W+QG TG+P++DA MR+L GW HNR+R Sbjct: 302 CFNFP-FTHERSFLGNLKHYPWLLDEDRFKSWRQGMTGYPLVDAGMRELWATGWTHNRIR 360 Query: 355 MITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQ 414 +I +SF VK L + W G +YF LLD DL S+ GWQ+ + + D R+ NP +Q Sbjct: 361 VIVSSFAVKCLQIPWIWGMKYFWDVLLDADLESDILGWQYISGSLPDGHELSRLDNPEVQ 420 Query: 415 GKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWL------DKNDLSLNYPLPIVDHKKACH 468 G+++DP G ++R W+PEL +PT++IH P S +L NYP PIV+ A Sbjct: 421 GQKYDPDGEYVRTWIPELARMPTEWIHCPWSAPNSILQVAGVELGFNYPKPIVELHMARE 480 Query: 469 ---HTLNQYYAA 477 ++ + Sbjct: 481 CLDDAISTMWQL 492 >gi|190349137|gb|EDK41731.2| hypothetical protein PGUG_05829 [Meyerozyma guilliermondii ATCC 6260] Length = 607 Score = 396 bits (1017), Expect = e-108, Method: Composition-based stats. Identities = 155/488 (31%), Positives = 250/488 (51%), Gaps = 23/488 (4%) Query: 14 LRNDLRITDNKALYAACHNS---DAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 D R +DN L AA + + ++ +++ + HG+S Q + SL +++ Sbjct: 119 FLRDFRQSDNTGLNAASRMAAKENLPLVCLYVLCRDDLFAHGVSGFQLEYRLRSLELLRE 178 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLL-EKRLQH 129 L+QK I + + + + Q +++ LF N +YE++E+RR L ++ L+ Sbjct: 179 ELAQKNIPLVFLNVDERKEVVPIVKEKAQQLKISHLFANIEYEVDELRRYTNLCKELLKA 238 Query: 130 RVICKSFDDSVLLPPGSILNHA-LQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188 + + +D+ L PG+I+ + + V+TP+ +A +L + Sbjct: 239 DISFQPHNDTTLAVPGTIVTKSKGTQFSVFTPWYRAWCAHLNKMKDPFQVRAKPEANSDE 298 Query: 189 TPSNIPRFFDYPF--------------QAIDPMFPIGEQNALHILRKFC-KEKVYYYVEQ 233 FD +A + GE A L+ F ++ Y Sbjct: 299 FRQRNSHLFDSKIPQAPPGKQLTEKQKEAFEKYHKPGENAAWDDLQDFITSGRIKRYNVD 358 Query: 234 RDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEE-FVDLLIKPKSGAFSWLNELIWREFYR 292 R+ P++ G S++S + + G ++ R L + + + GA W ++ WR+FYR Sbjct: 359 RNDPSVNGVSRMSVHFASGTINARTVIRSLLDHKLLRTIDSGNDGAREWARQVAWRDFYR 418 Query: 293 HLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNR 352 H++ +P +CM KPFI ++++W +S + W QG TG+PI+DAAMRQL+ +G++HNR Sbjct: 419 HVLCNWPHICMFKPFISNMDEVKWEYNSDHFERWCQGKTGYPIVDAAMRQLSEMGYLHNR 478 Query: 353 LRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPT 412 +RM+ ASFL K L++DWR GE YF+ L DGD SNNGGW +++S G D PYFRIFNP Sbjct: 479 VRMVVASFLSKHLMIDWREGERYFLENLADGDFPSNNGGWGFSSSVGVDPQPYFRIFNPW 538 Query: 413 IQGKRFDPQGTFIRHWLPELNNV-PTQYIHAPHSWLDKNDLSLN-YPLPIVDHKKACHHT 470 Q ++FD +G +IR WLPEL + + IH P+ + N YP PIVDHK A Sbjct: 539 TQAEKFDKKGDYIRKWLPELREIQDVKGIHNPYENGYRQIAEKNGYPPPIVDHKTARERA 598 Query: 471 LNQYYAAK 478 L +Y AK Sbjct: 599 LERYKEAK 606 >gi|289670152|ref|ZP_06491227.1| photolyase [Xanthomonas campestris pv. musacearum NCPPB4381] Length = 484 Score = 396 bits (1017), Expect = e-108, Method: Composition-based stats. Identities = 156/485 (32%), Positives = 227/485 (46%), Gaps = 17/485 (3%) Query: 2 KATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFI 61 + MS +VW R DLR+ DN AL AA I ++I P + + + Sbjct: 8 RCRVRMSYAIVWFRRDLRLEDNPALRAALDAGHHP-IPLYIDAPHEEGEWTPGVASRTWR 66 Query: 62 YASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDK 121 + SL + +L +G DS + LD Q +++NR+YE RD Sbjct: 67 HRSLAALDDALRARGSGLVIR----AGDSAQVLDEVIAQTGAVAVYWNRKYEPATQPRDA 122 Query: 122 LLEKRLQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVP 180 +++ L+ R I +S + ++L P + YK++TPF + + L P Sbjct: 123 QIKRALRERGIEAQSCNSALLFEPWQLSTQQGGPYKMFTPFWRNALTQLHLPAAVPAPRS 182 Query: 181 AIRLTGPVTPSNIPRFFDYPFQAIDPMF----PIGEQNALHILRKFCKEKVYYYVEQRDI 236 L + + P D F GE A +L F + Y E RD Sbjct: 183 LPPLPAALKTDALDTLQLVPSLNWDQGFWEHGQPGEAGAHEMLEIFIDGALSGYRENRDR 242 Query: 237 PAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMA 296 P GTSQLSP+L G ++P + + L+ + + ++ +L WR+F HL+ Sbjct: 243 PDRVGTSQLSPHLHFGEIAPWRIASTLEAR---RTARNGAEIDGYIRQLGWRDFAYHLLH 299 Query: 297 FYPSVCMGKPFIPWTEKIEWNK-DSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRM 355 +P + P E +W K D LQAW++G TG PI+DA MRQL GWMHNR+RM Sbjct: 300 HFPD-TTNQNLNPRFEGFDWTKVDPVALQAWQRGRTGIPIVDAGMRQLWHTGWMHNRVRM 358 Query: 356 ITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQG 415 I ASFL K L + W G +F L+D DLA+N GWQW A TG D+ PYFR+FNP Q Sbjct: 359 IVASFLCKHLRIHWIEGARWFWDTLVDADLANNTLGWQWVAGTGADAAPYFRVFNPVTQA 418 Query: 416 KRFDPQGTFIRHWLPELNNVPTQYIHAPH-SWLDKNDLSLNYP-LPIVDHKKACHHTLNQ 473 ++FDPQ T+I W+PEL + + AP L + YP PI+ + L Sbjct: 419 EKFDPQATYITRWVPELGKLAVKERFAPWLHPLSLARFASEYPRAPIIGLAEGRDAALAA 478 Query: 474 YYAAK 478 Y ++ Sbjct: 479 YAKSR 483 >gi|313634631|gb|EFS01103.1| deoxyribodipyrimidine photo-lyase [Listeria seeligeri FSL N1-067] Length = 471 Score = 396 bits (1017), Expect = e-108, Method: Composition-based stats. Identities = 167/479 (34%), Positives = 246/479 (51%), Gaps = 25/479 (5%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 ++W R DLR+ DNKALY AC + D ++ +F PEQ+ + ++S+ Sbjct: 2 TSVMWFRRDLRLNDNKALYQACRDKDDLIL-LFQVNPEQFIN---GSPSHQAFFSSVAYF 57 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRV-TKLFYNRQYEINEVRRD-KLLEKR 126 ++ L + H F + + L+ + K+++NR +RD L+ Sbjct: 58 KQKLDK-----TAHLQIMFGEPMGLLEKLKEKIPAWDKVYFNRDETGYGAKRDEAALQFF 112 Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 + + ++ D+ L + A YKV+TP+ K + + + L Sbjct: 113 AKEEIEVFAYHDAYLHHANDVKKSATDFYKVFTPYYKKWREEIKERPLPISLNSEKVNKT 172 Query: 187 PVTPSNIPRFFDYPFQAID-PMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245 + P + +F + + +GEQ A + L F KE + Y E RD P + TS L Sbjct: 173 ILFPEDEKQFVEMTRELPPLDATKLGEQAAQNHLNYFVKENMADYNEARDFPDLDKTSHL 232 Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305 S +L G +S R W ++E + +G ++ EL WR+FY + +P+ + Sbjct: 233 SRFLRTGEVSIRTVWQAVQEA------EHTNGRATFEKELCWRDFYNMIYVSFPNQ-KNE 285 Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365 IEW + Q W+QG TGFP++DAAMRQL GWMHNRLRMITASFL KDL Sbjct: 286 AIQANYRFIEWENNRTNFQKWQQGVTGFPLVDAAMRQLKETGWMHNRLRMITASFLTKDL 345 Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425 L+DWR GE+YF L+D D ASN GGWQWAASTG D+VPYFRIFNPT Q ++FDP G FI Sbjct: 346 LIDWRWGEKYFQQMLIDYDPASNIGGWQWAASTGTDAVPYFRIFNPTTQSEKFDPSGNFI 405 Query: 426 RHWLPELNNVPTQYIHAPHSWLDKND------LSLNYPLPIVDHKKACHHTLNQYYAAK 478 R ++ EL +P ++IH P + + +YP PIVDHK+ + +Y +K Sbjct: 406 RKYVQELAGLPDKFIHQPEKMTKQEQEKFHLIIGEDYPFPIVDHKERRKLAIARYEFSK 464 >gi|192291959|ref|YP_001992564.1| Deoxyribodipyrimidine photo-lyase [Rhodopseudomonas palustris TIE-1] gi|192285708|gb|ACF02089.1| Deoxyribodipyrimidine photo-lyase [Rhodopseudomonas palustris TIE-1] Length = 483 Score = 396 bits (1017), Expect = e-108, Method: Composition-based stats. Identities = 152/495 (30%), Positives = 230/495 (46%), Gaps = 27/495 (5%) Query: 1 MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHF 60 M + +VW R+DLR+ D+ AL+AA S A V+ V++ + + Sbjct: 1 MLTPASSRPIIVWFRDDLRLADHPALHAAAQ-SGAPVLCVYVLDEVSDDVRALGGAVRWW 59 Query: 61 IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNR-QYEINEVRR 119 + SL ++ L G + + L Q + +N + + Sbjct: 60 LAQSLRALESDLRALGGALILRRGP----AAAVLAELAQQHDAAAVHWNEIEIAAHRAVA 115 Query: 120 DKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPV 179 D L + + L+ P +I + + +V+TPF + ++ + + LP Sbjct: 116 DALADALTVAGIAYHRHRGDTLVEPSAIRSKDGRGMRVFTPFWRRVLS--LGDPPQPLPR 173 Query: 180 PAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIG--------EQNALHILRKFCKEKVYYYV 231 P P PS+ + D+ + P + G E A L F Y Sbjct: 174 PTTLRPAPAPPSD--QLGDWQLEPTAPDWAGGLRQTWTPGEAAAQARLSDFLAGLP-GYA 230 Query: 232 EQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFY 291 + RD P TS LSP+L G +SPRQ W + + +L+EL WREF Sbjct: 231 DGRDYPDRHITSGLSPHLRFGEISPRQVWYAARFAAAERPAIA-PDIDKFLSELGWREFC 289 Query: 292 RHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHN 351 RHL+ +P + + P + W D +L AW++G TG+PI+DA MR+L G MHN Sbjct: 290 RHLLFDHPDLAT-RNLQPAFDAFPWQSDDAVLTAWQRGRTGYPIVDAGMRELWHSGVMHN 348 Query: 352 RLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNP 411 R+RM+ SFLVK LL+DWR+GE++F L+D D SN G WQW A G D+ PYFR+FNP Sbjct: 349 RVRMVVGSFLVKHLLIDWRLGEQWFWDTLVDADPGSNPGNWQWVAGCGADAAPYFRVFNP 408 Query: 412 TIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHS------WLDKNDLSLNYPLPIVDHKK 465 +Q ++FD G +I+ W+PEL +P IH P + +L NYP PIVDHK Sbjct: 409 VLQSEKFDAGGAYIQRWVPELAGLPNDLIHQPWTATPLELAAAGIELGGNYPGPIVDHKT 468 Query: 466 ACHHTLNQYYAAKKQ 480 L+ Y +++ Sbjct: 469 GRQRALSAYAELRQR 483 >gi|58581149|ref|YP_200165.1| photolyase [Xanthomonas oryzae pv. oryzae KACC10331] gi|84623072|ref|YP_450444.1| photolyase [Xanthomonas oryzae pv. oryzae MAFF 311018] gi|58425743|gb|AAW74780.1| photolyase [Xanthomonas oryzae pv. oryzae KACC10331] gi|84367012|dbj|BAE68170.1| photolyase [Xanthomonas oryzae pv. oryzae MAFF 311018] Length = 484 Score = 396 bits (1017), Expect = e-108, Method: Composition-based stats. Identities = 156/485 (32%), Positives = 229/485 (47%), Gaps = 17/485 (3%) Query: 2 KATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFI 61 + MS +VW R DLR+ DN AL AA I ++I P + + A + Sbjct: 8 RCRVRMSYAIVWFRRDLRLQDNPALRAALDAGHHP-IPLYIDAPHEEGEWTPGAASRTWR 66 Query: 62 YASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDK 121 + SL ++ +L G DS + LD+ Q +++NR+YE RD Sbjct: 67 HRSLAALEDALRALGSGLVIR----AGDSAQVLDAVIAQTGAVAVYWNRKYEPATQPRDA 122 Query: 122 LLEKRLQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVP 180 +++ L+ R I +S + ++L P + YKV+TPF + + L P Sbjct: 123 QIKRALRERGIEAQSCNCALLFEPWQLSTQQGGPYKVFTPFWRNALTQLQLPATAPAPRS 182 Query: 181 AIRLTGPVTPSNIPRFFDYPF----QAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDI 236 L + + P Q + GE A +L F + Y + RD Sbjct: 183 LPPLPAMLKTDALDTLQLVPSLNWDQGFWEHWHAGEAGAHEMLEFFIDGGLSGYRKNRDR 242 Query: 237 PAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMA 296 P GTSQLSP+L G ++P + + L+ + + ++ +L WR+F HL+ Sbjct: 243 PDRVGTSQLSPHLHFGEIAPWRIASALE---AQRTARNGAEIDGYIRQLGWRDFAYHLLH 299 Query: 297 FYPSVCMGKPFIPWTEKIEWNK-DSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRM 355 +P + P E +W K D LQAW++G TG PI+DA MRQL GWMHNR+RM Sbjct: 300 HFPD-TTNQNLNPRFEGFDWAKVDPVALQAWQRGRTGIPIVDAGMRQLWHTGWMHNRVRM 358 Query: 356 ITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQG 415 I ASFL K L + W G +F L+D DLA+N GWQW A TG D+ PYFR+FNP Q Sbjct: 359 IVASFLCKHLRIHWIEGARWFWDTLVDADLANNTLGWQWVAGTGADAAPYFRVFNPVTQA 418 Query: 416 KRFDPQGTFIRHWLPELNNVPTQYIHAPH-SWLDKNDLSLNYPL-PIVDHKKACHHTLNQ 473 ++FDP T+I W+PEL +P + AP L + YP PI+ + L Sbjct: 419 EKFDPHATYITRWVPELGKLPVKERFAPWLHPLSLARFAPEYPRTPIIGLAEGRDAALAA 478 Query: 474 YYAAK 478 Y ++ Sbjct: 479 YSKSR 483 >gi|22297968|ref|NP_681215.1| DNA photolyase [Thermosynechococcus elongatus BP-1] gi|22294146|dbj|BAC07977.1| DNA photolyase [Thermosynechococcus elongatus BP-1] Length = 480 Score = 396 bits (1017), Expect = e-108, Method: Composition-based stats. Identities = 162/480 (33%), Positives = 234/480 (48%), Gaps = 19/480 (3%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 MS+ L W R DLR+ DN L AA + KV+ +F P I+A + ++ L Sbjct: 1 MSLRLFWHRRDLRLNDNLGL-AAAYTRTPKVVGLFCFDPAILSASDIAAVRVAYLVGCLQ 59 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 +Q++ + G F + + L + ++ E RD+ + Sbjct: 60 ALQEAYRRLGGSFLIFRGDPR----QILPQVAKGLGAVAVHWHEDVEPYGRERDRAVAAA 115 Query: 127 LQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKAL------IQNLVQADLRSLPV 179 L+ + I ++ D +L PP +I Q Y VY+PF + L L Sbjct: 116 LKEKGIAVETAWDQLLHPPEAIQTKQGQPYTVYSPFWRNWSSLAKPEPVSAPRHLEPLTE 175 Query: 180 PAIRLTGPVTPSNIPRFFDYPFQAI-DPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPA 238 G + +P D F D + GE A L F + + Y EQR+ PA Sbjct: 176 IEQATAGTLGAICLPTAKDLGFHWSGDLILAPGEAAAQAQLETFIDQHIQDYGEQRNYPA 235 Query: 239 IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIK-PKSGAFSWLNELIWREFYRHLMAF 297 GTS LSP L GV+ R+ W + + + +W EL WREFY+H + + Sbjct: 236 QPGTSLLSPALKFGVIGIRRVWTATQAAMAAARSEEAQRSIRTWQQELAWREFYQHALYW 295 Query: 298 YPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMIT 357 +P + +P W + AW +G TG+PI+DAAMRQLN GWMHNR RMI Sbjct: 296 FPHLAE-RPHREGFATFPWLNNEAHFAAWCEGRTGYPIVDAAMRQLNETGWMHNRCRMIV 354 Query: 358 ASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKR 417 ASFL KDL+++ + GE YFM +L+DGDLA+NNGGWQW+AS+G D P RIFNP Q ++ Sbjct: 355 ASFLTKDLIINPQWGERYFMQKLIDGDLAANNGGWQWSASSGMDPKP-LRIFNPASQAQK 413 Query: 418 FDPQGTFIRHWLPELNNVPT-QYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYA 476 FDP+ +IR WLPE+ ++ T + S L+++ YPLPIVDH++ Y Sbjct: 414 FDPEAEYIRRWLPEVRSLDTIDLVTGNISPLERHRCG--YPLPIVDHRQQQQRFKQLYQE 471 >gi|257877829|ref|ZP_05657482.1| deoxyribodipyrimidine photo-lyase type I [Enterococcus casseliflavus EC20] gi|257811995|gb|EEV40815.1| deoxyribodipyrimidine photo-lyase type I [Enterococcus casseliflavus EC20] Length = 473 Score = 395 bits (1016), Expect = e-108, Method: Composition-based stats. Identities = 168/484 (34%), Positives = 252/484 (52%), Gaps = 26/484 (5%) Query: 7 MSVHLVWLRNDLRITDNKALYAACH--NSDAKVIAVFIATPEQWRQHGISARQSHFIYAS 64 M++H++W R DLR+ DN AL A + ++ VF +Q+ S + +++ Sbjct: 1 MAIHVMWFRKDLRLEDNTALTEALVSLQENDHLLCVFHLNDKQFLPEAPSH---DYFFSA 57 Query: 65 LLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLE 124 + K+ ++ + ++ + L + + ++L++N +RD ++ Sbjct: 58 VAHFIKAAKKQNLTIHLLTG-TLTEAFDQLFACYPEW--SQLYFNFDNRGFGRKRDLYIK 114 Query: 125 KRLQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSL--PVPA 181 + ++ + I SF+D L P + YK +TP+ K IQ + + Sbjct: 115 ELVEKKGITVHSFEDHHLHQPTEVTKEDGTYYKKFTPYYKKWIQLPKPVYQKQALDFEKS 174 Query: 182 IRLTGPVTPSNIPRFFDYPFQAIDPMFP--IGEQNALHILRKFCKEKVYYYVEQRDIPAI 239 + + F +GE A L+ F ++++ Y + RDIP+I Sbjct: 175 VHFDDAPHFKAGTALLAKLLENRKTDFSTIVGEDYAHKQLQAFVQKRLAAYEKDRDIPSI 234 Query: 240 QGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYP 299 +GTS+LSP+LS G +S R+ W + + +G ++L EL WR+FY + +P Sbjct: 235 KGTSRLSPFLSFGQISIRKVWAACQ------GMPSSTGKATFLKELAWRDFYHMIYFSHP 288 Query: 300 SVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITAS 359 I ++W K+ L W+ G TG+PIIDAAMRQLN GWMHNRLRMI AS Sbjct: 289 EQ-KNYELIEKYRNMDWRKNEEELTKWQAGQTGYPIIDAAMRQLNQTGWMHNRLRMIVAS 347 Query: 360 FLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFD 419 FL KDLL+DWR GE YF QL+D D ASN GGWQWAASTG D+VPYFRIFNP QGK+FD Sbjct: 348 FLTKDLLIDWRQGEAYFARQLIDYDAASNIGGWQWAASTGTDAVPYFRIFNPITQGKKFD 407 Query: 420 PQGTFIRHWLPELNNVPTQYIHAPHSWLDKND------LSLNYPLPIVDHKKACHHTLNQ 473 GTFI+ ++PEL +P ++IH P+ D+ L +YPLPIVDH +A L+ Sbjct: 408 KDGTFIKQFVPELAQLPLKFIHEPYLMTDEEQADLKVVLGTDYPLPIVDHNEARKRALDL 467 Query: 474 YYAA 477 Y Sbjct: 468 YSKI 471 >gi|166712667|ref|ZP_02243874.1| photolyase [Xanthomonas oryzae pv. oryzicola BLS256] Length = 484 Score = 395 bits (1016), Expect = e-108, Method: Composition-based stats. Identities = 156/485 (32%), Positives = 227/485 (46%), Gaps = 17/485 (3%) Query: 2 KATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFI 61 + MS +VW R DLR+ DN AL AA I ++I P + + + Sbjct: 8 RCRVRMSYAIVWFRRDLRLQDNPALRAALDAGHHP-IPLYIDAPHEEGEWTPGGASRTWR 66 Query: 62 YASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDK 121 + SL ++ +L G DS + LD Q +++NR+YE RD Sbjct: 67 HRSLAALEDALRALGSGLVIR----AGDSAQVLDDVIAQTGAVAVYWNRKYEPATQPRDA 122 Query: 122 LLEKRLQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVP 180 +++ L+ R I +S + ++L P + YKV+TPF + + L P Sbjct: 123 QIKRALRERGIEAQSCNCALLFEPWQLSTQQGGPYKVFTPFWRNALTQLQLPATAPAPGS 182 Query: 181 AIRLTGPVTPSNIPRFFDYPF----QAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDI 236 L + + P Q + GE A +L F + Y E RD Sbjct: 183 LPPLPAMLKTDALDTLQLVPSLNWDQGFWEHWHAGEAGAHEMLEIFIDGGLSGYRENRDR 242 Query: 237 PAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMA 296 P GTSQLSP+L G ++P + + L+ + + ++ +L WR+F HL+ Sbjct: 243 PDRVGTSQLSPHLHFGEIAPWRIASALE---AQRTARNGAEIDGYIRQLGWRDFAYHLLH 299 Query: 297 FYPSVCMGKPFIPWTEKIEWNK-DSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRM 355 +P + P E +W K D LQAW++G TG PI+DA MRQL GWMHNR+RM Sbjct: 300 HFPD-TTNQNLNPRFEGFDWAKVDPVALQAWQRGRTGVPIVDAGMRQLWHTGWMHNRVRM 358 Query: 356 ITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQG 415 I ASFL K L + W G +F L+D DLA+N GWQW A TG D+ PYFR+FNP Q Sbjct: 359 IVASFLCKHLRIHWIEGARWFWDTLVDADLANNTLGWQWVAGTGADAAPYFRVFNPVTQA 418 Query: 416 KRFDPQGTFIRHWLPELNNVPTQYIHAPH-SWLDKNDLSLNYPL-PIVDHKKACHHTLNQ 473 ++FDP T+I W+PEL +P + AP L + YP PI+ + L Sbjct: 419 EKFDPHATYITRWVPELGKLPVKERFAPWLHPLSLARFAPEYPRTPIIGLAEGRDAALAA 478 Query: 474 YYAAK 478 Y ++ Sbjct: 479 YSKSR 483 >gi|48951|emb|CAA43069.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp. enterica serovar Typhimurium] Length = 450 Score = 395 bits (1016), Expect = e-108, Method: Composition-based stats. Identities = 242/475 (50%), Positives = 319/475 (67%), Gaps = 25/475 (5%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M HLVW R DLR+ DN A AAC ++ A+V+A++I+TP QW+ H ++ RQ+ FI A L Sbjct: 1 MPTHLVWFRRDLRLQDNLA-AAACRDASARVLALYISTP-QWQAHDMAPRQAAFISAQL- 57 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 +Q +L++KGI +H+ + F+ SIE + + C Q V+ FYN QYE NE +RD+ +EK Sbjct: 58 ALQTALAEKGIPLLFHEVA-FNASIETVKNVCRQHDVSH-FYNYQYEFNERQRDRAVEKL 115 Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 VIC+ FDDSV+L PG+ + +MYKV+TPF+ A + L + +P P IR++G Sbjct: 116 --PSVICEGFDDSVILAPGA-MTGNHEMYKVFTPFKNAWL-RLKEDIPPCVPAPKIRVSG 171 Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246 TP +YP Q D +FP+ E + LR+FC + Y +RD PA+ GTS+L Sbjct: 172 LSTPLTPVSL-NYPQQEFDALFPVEENAVIAQLRQFCAQA-DEYALRRDFPAVDGTSRL- 228 Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP 306 L+ G LSPRQC +RL + L P S WLNELIW EFYRHLM +YP++C +P Sbjct: 229 ASLATGGLSPRQCLHRLLAQPQALDGGPGS---VWLNELIW-EFYRHLMTWYPALCKHQP 284 Query: 307 FIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLL 366 F WT+++ W ++ H QAW QG TG+PI+DAAMRQLN G MHNRLRMITASFLVKDLL Sbjct: 285 FR-WTKRVAWQENPHYFQAW-QGETGYPIVDAAMRQLNATG-MHNRLRMITASFLVKDLL 341 Query: 367 VDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIR 426 + WR+GE YFMSQL+DGDLA+N GGWQWAASTG D+ PYFR FNPT QG+RFD G FIR Sbjct: 342 I-WRLGERYFMSQLIDGDLAAN-GGWQWAASTGTDAAPYFR-FNPTTQGERFDRDGEFIR 398 Query: 427 HWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481 LP L ++P + IH P W K + L+YP PIV+HK+A TL+ Y AA+K + Sbjct: 399 Q-LPALRDIPGKAIHEPWRW-AKAGVVLDYPRPIVEHKQAR-ATLSAYEAARKGA 450 >gi|316933592|ref|YP_004108574.1| DNA photolyase FAD-binding protein [Rhodopseudomonas palustris DX-1] gi|315601306|gb|ADU43841.1| DNA photolyase FAD-binding protein [Rhodopseudomonas palustris DX-1] Length = 483 Score = 395 bits (1016), Expect = e-108, Method: Composition-based stats. Identities = 158/495 (31%), Positives = 232/495 (46%), Gaps = 27/495 (5%) Query: 1 MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHF 60 M T +VW R+DLR+ D+ AL+AA S A V+ V++ + + Sbjct: 1 MLTTAGSRPVIVWFRDDLRLADHPALHAAAQ-SGAPVLCVYVLDEVSDEVRALGGAARWW 59 Query: 61 IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNR-QYEINEVRR 119 + SL ++ L G + + + L Q + +N + + Sbjct: 60 LAQSLRSLEAELRAAGALLILRRGP----AAAVLAELAQQSDAAAVHWNEIEIAPHRAVA 115 Query: 120 DKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPV 179 D L + + L+ P +I + + +V+TPF + ++ + + LP Sbjct: 116 DALADALTMAGIAYHRHSGDTLVAPSAIRSKDGRGMRVFTPFWRRVLS--LGDPPQPLPR 173 Query: 180 PAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIG--------EQNALHILRKFCKEKVYYYV 231 PA P P + D+ + P + G E A L F ++ Y Sbjct: 174 PAALRPAPALPGA--QLSDWQLEPTAPDWAGGLRATWRPGEAAAKTRLADFLA-RLPGYA 230 Query: 232 EQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFY 291 E RD P TS LSPYL G +SPRQ W + + +L+EL WREF Sbjct: 231 EGRDYPDRHVTSGLSPYLRFGEISPRQVWYAARFAAAERPAIA-PDIDKFLSELGWREFC 289 Query: 292 RHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHN 351 RHL+A +P + + P + W D L AW++G TG+PI+DA M +L G MHN Sbjct: 290 RHLLADHPDLA-ARNLQPAFDAFPWQSDDGALTAWQRGRTGYPIVDAGMHELWHSGVMHN 348 Query: 352 RLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNP 411 R+RM+ SFLVK LL+DWR+GE++F L+D D SN G WQW A G D+ PYFR+FNP Sbjct: 349 RVRMVVGSFLVKHLLIDWRLGEQWFWDTLVDADPGSNPGNWQWVAGCGADAAPYFRVFNP 408 Query: 412 TIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHS------WLDKNDLSLNYPLPIVDHKK 465 +Q ++FD G +IR WLPEL +P IH P + +L NYP PIVDHK Sbjct: 409 VLQSEKFDADGAYIRRWLPELAGLPNNLIHQPWTATPLELAAAGVELGGNYPRPIVDHKA 468 Query: 466 ACHHTLNQYYAAKKQ 480 A L+ Y +++ Sbjct: 469 ARQRALSAYSELRQR 483 >gi|254373077|ref|ZP_04988566.1| hypothetical protein FTCG_00652 [Francisella tularensis subsp. novicida GA99-3549] gi|151570804|gb|EDN36458.1| hypothetical protein FTCG_00652 [Francisella novicida GA99-3549] Length = 464 Score = 395 bits (1016), Expect = e-108, Method: Composition-based stats. Identities = 160/483 (33%), Positives = 246/483 (50%), Gaps = 30/483 (6%) Query: 6 AMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASL 65 + + + W R DLR+ DN ALY A + I +FI Q GI +++ SL Sbjct: 2 SKKIAIHWFRQDLRLADNPALYQASQADET--ITIFILDKNQ----GIGGASKLWLHYSL 55 Query: 66 LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125 + SL K ++ + +E + + +T ++NR Y+ + RD +++ Sbjct: 56 NSLNSSLDNK---LNFYSG----NPLEIIRKIIKENNITDFYWNRCYDKYSIDRDTQIKQ 108 Query: 126 RLQ-HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPA--I 182 LQ H++ SF+ S+L+ P YKVYTPF K LI+ + P + Sbjct: 109 FLQQHKINVNSFNGSLLIEPWQCKKDDGTHYKVYTPFYKELIKIRKYRSNIAKPNFSYLR 168 Query: 183 RLTGPVTPSNIPRF-FDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQG 241 +L ++ + +Q I + IGE + IL +F KV Y RD + Sbjct: 169 KLNNSENLDSLKLLQPKHSWQNIIKQWQIGESASHQILEEFLDNKVKEYKTARDFMSTDS 228 Query: 242 TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSV 301 TS+LSPYL G +SP Q +N ++ L + ++ EL+WR+F + + +YP + Sbjct: 229 TSKLSPYLHFGEISPNQIFNAVQ-----SLDYIGNNEEHFIKELVWRDFSYYQIYYYPEL 283 Query: 302 CMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFL 361 K + +W+ D LL+ W++G TG PI+DA MR+L G+MHNR+RMI ASFL Sbjct: 284 -HNKNINQKFDSFKWDNDPTLLKKWQKGQTGIPIVDAGMRELWQTGYMHNRVRMIVASFL 342 Query: 362 VKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQ 421 +K+ L+ W+ GE++F L D D ASNN WQW A G D+ PYFRIFNP +Q ++F+ Sbjct: 343 IKNCLIHWKYGEKWFFDTLFDADFASNNANWQWVAGCGLDAAPYFRIFNPVLQAEKFEAY 402 Query: 422 GTFIRHWLPELNNVPTQYIHAPHS----WLDKNDLSL--NYPLPIVDHKKACHHTLNQYY 475 +IR ++PEL +P + I P L + ++L NYP PIVD KK+ L + Sbjct: 403 -EYIRKYVPELKLLPNKLIAKPWEASELVLQEAGITLGQNYPKPIVDLKKSRDRALQLHN 461 Query: 476 AAK 478 K Sbjct: 462 QIK 464 >gi|133921974|emb|CAI63876.1| cryptochrome 2 [Brassica napus] Length = 618 Score = 395 bits (1016), Expect = e-108, Method: Composition-based stats. Identities = 142/500 (28%), Positives = 228/500 (45%), Gaps = 30/500 (6%) Query: 7 MSVH---LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYA 63 MS + +VW R DLRI DN AL AA H V VFI PE+ Q ++ Sbjct: 1 MSTNKKTIVWFRRDLRIEDNPALAAAAHEG--SVFPVFIWCPEEEGQFYPGRASRWWMKQ 58 Query: 64 SLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLL 123 SL + +SL G + N ++ + TK+ +N Y+ + RD + Sbjct: 59 SLAHLTQSLKALGSEPTLIKTHN---TVSAILDCVRATGATKVVFNHLYDPVSLVRDHTV 115 Query: 124 EKRLQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAI 182 +++L R I +S++ +L P I + + + + K + V++ + P I Sbjct: 116 KEKLVERGISVQSYNGDLLYEPWEIYCEKGKPFTNFNSYWKKCLDMPVESVVIPPPWRLI 175 Query: 183 RLTGPVTPSNIPRFFDYPFQA---------IDPMFPIGEQNALHILRKFCKEKVYYYVEQ 233 LT T + + + + G NA IL +F ++++ Y + Sbjct: 176 PLTAAGT-VWACSIEELGLENEAEKPSNALLTRAWSPGWSNADKILTEFIEKQLIDYAKN 234 Query: 234 RDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEF----VDLLIKPKSGAFSWLNELIWRE 289 TS LSPYL G +S R+ + + + D + A +L + R+ Sbjct: 235 SKKVVGNSTSLLSPYLHFGEISVRRVFQCARMKQIIWARDKNGQGVESAVLFLRGIGLRD 294 Query: 290 FYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWM 349 + R++ +P + + W+ D +AW+QG TG+P++DA MR+L GWM Sbjct: 295 YSRYICFNFP-FTHEQSLLSHLRFFPWDADVEKFKAWRQGRTGYPLVDAGMRELWATGWM 353 Query: 350 HNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIF 409 HNR+R+I +SF VK LL+ W+ G +YF LLD DL + GWQ+ + + D R+ Sbjct: 354 HNRIRVIVSSFAVKFLLLPWKWGMKYFWDTLLDADLECDIIGWQYISGSLPDGHELDRLD 413 Query: 410 NPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSW------LDKNDLSLNYPLPIVDH 463 NP IQG ++DP+G +IR WLPEL +PT++IH P +L NY PIVD Sbjct: 414 NPAIQGAKYDPEGEYIRQWLPELARLPTEWIHHPWDAPLTVLKASGVELGTNYAKPIVDI 473 Query: 464 KKACHHTLNQYYAAKKQSLL 483 A ++ ++ Sbjct: 474 DTARELLTKAISRTREAQIM 493 >gi|78217443|gb|ABB36797.1| cryptochrome 2 [Nicotiana sylvestris] Length = 641 Score = 395 bits (1016), Expect = e-108, Method: Composition-based stats. Identities = 137/497 (27%), Positives = 239/497 (48%), Gaps = 26/497 (5%) Query: 1 MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHF 60 M++ + +VW R DLRI DN AL AA N V VFI +P++ Q + Sbjct: 1 MESNSK---TIVWFRRDLRIEDNPALAAAARNG--SVFPVFIWSPKEEGQFYPGRVSRWW 55 Query: 61 IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120 + SL+ +++SL G + ++ L TK+ YN Y+ + RD Sbjct: 56 LKQSLIHLEQSLKSLGAELVLIKA---QSTLSALLDCIEAVGATKVVYNHLYDPVSLVRD 112 Query: 121 KLLEKRLQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPV 179 ++++L I +S++ +L P + + +++ + + + ++ + P Sbjct: 113 HNIKQKLGELGISVQSYNGDLLNEPWEVYDDDGKVFTTFDAYWEKSLRLQKEPVSHLPPW 172 Query: 180 PAIRLTGPVTPSNIPRF--FDYPFQAIDPM----FPIGEQNALHILRKFCKEKVYYYVEQ 233 I G V ++ + ++ + + + G NA L +F + ++ Y + Sbjct: 173 KLIPAAGSVKMCSVEELGLENESEKSSNALLGKGWAPGWSNADKALTEFVENQLLAYSKD 232 Query: 234 RDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKS----GAFSWLNELIWRE 289 R TS LSPYL G +S R+ +N ++ + + + S A +L + RE Sbjct: 233 RLRVGGNSTSLLSPYLHFGEVSVRKVFNSVRLKQILWTKEGNSVGDESASLYLRAIGLRE 292 Query: 290 FYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWM 349 + R++ +P + + + WN D +AW+QG TG+P++DA MR+L GW+ Sbjct: 293 YSRYICFNFP-FTHERSLLNNLKFFPWNADQARFKAWRQGRTGYPLVDAGMRELWATGWI 351 Query: 350 HNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIF 409 HN++R+I ASF VK LL+ W+ G +YF LLD DL S+ GWQ+ + + D R+ Sbjct: 352 HNKIRVIVASFFVKFLLLPWQWGMKYFWDTLLDADLESDIIGWQYISGSLPDGHELERLD 411 Query: 410 NPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSW------LDKNDLSLNYPLPIVDH 463 NP +QG +DP+G ++RHWLPEL +P ++IH P +L +NYP PI+D Sbjct: 412 NPEVQGFNYDPEGEYVRHWLPELARMPAEWIHHPWDAPLTVLKAAGVELGMNYPNPIIDV 471 Query: 464 KKACHHTLNQYYAAKKQ 480 A + + +++ Sbjct: 472 DVARDRLMQAIFIMREK 488 >gi|312796611|ref|YP_004029533.1| Deoxyribodipyrimidine photolyase [Burkholderia rhizoxinica HKI 454] gi|312168386|emb|CBW75389.1| Deoxyribodipyrimidine photolyase (EC 4.1.99.3) [Burkholderia rhizoxinica HKI 454] Length = 522 Score = 395 bits (1016), Expect = e-108, Method: Composition-based stats. Identities = 154/496 (31%), Positives = 235/496 (47%), Gaps = 32/496 (6%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 +VW R+D R+ DN AL A V+ V++ P A +++ SL + Sbjct: 24 VVWFRDDQRLADNPALEYATATGH-PVVCVYVHDPAPRNTRPPGAAGRWWLHESLRALNA 82 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130 +L G S + ++++ + K+ +NR+Y + D ++ L+ R Sbjct: 83 ALVALGGELTVLHGSES----QAIEAFAVAIGAIKVCWNRRYSAPQRETDTAIKTALKER 138 Query: 131 VI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189 I +F+ +L P ++ + ++V++ + +A + P P Sbjct: 139 GIAVFTFNGHLLREPWAVATRDGRPFQVFSAYWRAARHQYSPEAPQPAPQRINFFPVPDN 198 Query: 190 PSNIPRFFDYPFQAIDP-----------MFPIGEQNALHILRKFCKEKVYYYVEQRDIPA 238 R + A+ P + GEQ L F + Y RD+PA Sbjct: 199 IGVAARVENLSALALQPRTPDWASGLRETWQCGEQAGQTQLDAFLANALTRYASGRDVPA 258 Query: 239 IQGTSQLSPYLSIGVLSPRQCWNRLKEEF--------VDLLIKPKSGAFSWLNELIWREF 290 +Q TS+LSPYL G LS RQ W+ SG +L+EL WREF Sbjct: 259 MQATSRLSPYLRFGNLSARQVWHAALSAARVGRHCGDARRTCTASSGVDKFLDELGWREF 318 Query: 291 YRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMH 350 +L+ + F + + W D+ L+AW+ G TG+P++DA MR+L GWMH Sbjct: 319 SYYLLYHC-APLHQVNFKRQFDTMPWRADTADLRAWQHGRTGYPLVDAGMRELWHTGWMH 377 Query: 351 NRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFN 410 NR+RM+TASFLVK LL++WR GE +F L+D D ASN WQW A +G D+ PYFRIFN Sbjct: 378 NRVRMVTASFLVKHLLINWREGEAWFWDTLVDADEASNPANWQWVAGSGADAAPYFRIFN 437 Query: 411 PTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKN------DLSLNYPLPIVDHK 464 P +QG++FDPQG ++R W+PEL VP+ +HAP L +YPLP+V H+ Sbjct: 438 PVLQGQKFDPQGAYVRRWVPELARVPSGCVHAPWLAQPAQLASASVRLGQDYPLPVVPHQ 497 Query: 465 KACHHTLNQYYAAKKQ 480 +A L + + Sbjct: 498 QARERALKAMEHMRGR 513 >gi|312114970|ref|YP_004012566.1| DNA photolyase FAD-binding protein [Rhodomicrobium vannielii ATCC 17100] gi|311220099|gb|ADP71467.1| DNA photolyase FAD-binding protein [Rhodomicrobium vannielii ATCC 17100] Length = 484 Score = 395 bits (1015), Expect = e-108, Method: Composition-based stats. Identities = 158/475 (33%), Positives = 232/475 (48%), Gaps = 20/475 (4%) Query: 1 MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHF 60 M ++ + LV R DLR+ D+ AL AA A V+ V+I E + + + Sbjct: 1 MPLSSRAAPALVLFRRDLRLADHPALSAAAETG-APVLPVYILDDETPGRWRMGGASRWW 59 Query: 61 IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120 +Y SL + L +G L + + + R YE + + Sbjct: 60 LYQSLRSLGADLEARGSRLVLRHGETK----RVLGELIEETGARSVLFTRGYEPYQRALE 115 Query: 121 KLLEKRLQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPV 179 L+ L+ R + + F +L+ P SI N A + ++V+TPF +AL Q A P Sbjct: 116 GRLKPSLEARGVSLRRFGGQILVEPESIANLAGEPFRVFTPFFRALSQRGAPATPLPAPQ 175 Query: 180 PAIRLTGPVTPSNIPRFFDYPFQ-----AIDPMFPIGEQNALHILRKFCKEKVYYYVEQR 234 + P + I + GE A L F + + Y +R Sbjct: 176 KLAAPDSWPRSDALASLALEPTRPDWAGGIRAAWRPGETAARERLTAFIEAALPSYRTRR 235 Query: 235 DIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHL 294 D P I GTS+LSP+L+ G + PRQ W+ ++ + A+ L E+ WREF HL Sbjct: 236 DEPGIDGTSRLSPHLAFGEIGPRQIWHAVQAAAEAAGDHAAADAY--LREVGWREFSYHL 293 Query: 295 MAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLR 354 + +P + PF P W D+ L+AW++G TG+PI+DA MRQL GWMHNR+R Sbjct: 294 LFHFPHLPEA-PFRPEFTAFPWRDDADALEAWQRGRTGYPIVDAGMRQLWQTGWMHNRVR 352 Query: 355 MITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQ 414 MI ASFL+K LL W+ G ++F L+D DLA+N WQW A +G D+ PYFRIFNP +Q Sbjct: 353 MIVASFLIKHLLSPWQTGADWFWDTLVDADLANNAASWQWVAGSGADAAPYFRIFNPVLQ 412 Query: 415 GKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKN------DLSLNYPLPIVDH 463 G++FDP+G ++R ++PEL +P IH P + L +P PIVDH Sbjct: 413 GEKFDPRGDYVRAFVPELAKLPASLIHKPWTASAAALRDAGVTLGETWPHPIVDH 467 >gi|163788107|ref|ZP_02182553.1| deoxyribodipyrimidine photolyase-class I [Flavobacteriales bacterium ALC-1] gi|159876427|gb|EDP70485.1| deoxyribodipyrimidine photolyase-class I [Flavobacteriales bacterium ALC-1] Length = 434 Score = 395 bits (1015), Expect = e-108, Method: Composition-based stats. Identities = 140/472 (29%), Positives = 219/472 (46%), Gaps = 45/472 (9%) Query: 6 AMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASL 65 +V++ W R DLR+ DN Y A + V+ +FI E + + FI+ +L Sbjct: 2 TKTVNIFWFRRDLRLDDNVGFYEALK-GNHPVLPIFIFDSEILSKLPKDDARITFIHETL 60 Query: 66 LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125 ++++L ++ ++ E + ++ N YE RD ++ Sbjct: 61 QNIRQTLQDN---YRSSIAMHYGKPKEVYTQLIKDYNINSVYTNHDYEPYAKERDTEVKS 117 Query: 126 RL-QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAI-R 183 L +H + K++ D V+ I+ YKVYTP+ ++ + D + A + Sbjct: 118 VLAEHNIEFKTYKDQVVFEKNEIVKKDGAPYKVYTPYMRSWKEKFKTLDFKIYKTKAYFK 177 Query: 184 LTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS 243 D F+ + + P E + + + Y R+ PA TS Sbjct: 178 NIFQEINLPNLSLSDIGFETSNQLIPPYEVS---------SKLIQNYEATRNFPAQNSTS 228 Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCM 303 +L P+L G +S R+ + E ++ +L+ELIWREF+ ++ +P Sbjct: 229 RLGPHLRFGTVSIRKMVKKAITETNEI----------FLHELIWREFFMQILWHFPHTAK 278 Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363 F P ++IEW + +AW +G TG+P +DA MRQLN G+MHNR+RM+ SFL K Sbjct: 279 D-AFKPKYDRIEWRNNEGEFKAWCEGKTGYPFVDAGMRQLNETGFMHNRVRMLVGSFLCK 337 Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423 LL+DWR GE YF +L D D++SN G WQW A +G D+ PYFRIFNPT Q +FD Sbjct: 338 HLLIDWRWGEAYFAEKLHDYDMSSNIGNWQWVAGSGVDAAPYFRIFNPTSQILKFDKNLE 397 Query: 424 FIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYY 475 +I+ W+P+ + YP PIVDHK+A L Y Sbjct: 398 YIKKWVPDFQEL-------------------TYPQPIVDHKEARERCLKTYK 430 >gi|282897058|ref|ZP_06305060.1| DNA photolyase, FAD-binding [Raphidiopsis brookii D9] gi|281197710|gb|EFA72604.1| DNA photolyase, FAD-binding [Raphidiopsis brookii D9] Length = 479 Score = 395 bits (1015), Expect = e-108, Method: Composition-based stats. Identities = 167/479 (34%), Positives = 234/479 (48%), Gaps = 20/479 (4%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 L W R DLR +DN L A KV+ VF P Q I+ + ++ L ++ Sbjct: 6 LFWHRRDLRTSDNTGLGVA-REKTKKVVGVFCLDPNILGQDDIAPARITYMIGCLKSLES 64 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130 Q G D+ + + + +F+N E RD+ + L+ R Sbjct: 65 LYLQAGSQLLILH----DNPVRAIPNLAEALEAKAVFWNWDVEPYAQIRDRDVTLALKTR 120 Query: 131 VI--CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAI------ 182 I + D +L P +IL+ Y VYTPF K + L Sbjct: 121 GIETLEKNWDQLLHSPETILSGTRTPYTVYTPFWKKWHSQPKLEPIEILANCENLTAREE 180 Query: 183 RLTGPVTPSNIPRFFDYPF-QAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQG 241 + +P D F + + GE A L F + Y E+R+ PAI G Sbjct: 181 EIAEKSGVIKLPTARDLGFIWDGELILEPGEVAAWERLTDFLDCAIDEYEEKRNYPAIDG 240 Query: 242 TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKP-KSGAFSWLNELIWREFYRHLMAFYPS 300 TS LSP L GV+ R W + +E + +G +W EL WREFY+H M +P Sbjct: 241 TSLLSPALKFGVIGIRTIWQKTQELLAISNSQEFSNGIITWQKELAWREFYQHAMYHFPE 300 Query: 301 VCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASF 360 + G + + W+ + Q+W +G TG+PI+DAAMRQLN GWMHNR RMI ASF Sbjct: 301 LAEG-AYRDVFKNFPWSDNQDHFQSWCEGKTGYPIVDAAMRQLNETGWMHNRCRMIVASF 359 Query: 361 LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDP 420 L KDL+++ + GE+YFM +L+DGDL++NNGGWQW+AS+G D P RIFNP+ Q ++FD Sbjct: 360 LTKDLIINPQWGEKYFMQKLIDGDLSANNGGWQWSASSGMDPKP-LRIFNPSSQAQKFDG 418 Query: 421 QGTFIRHWLPELNNVPTQY-IHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478 G +IRHW+ EL +V T+Y I + L++ L YP PIVDHKK Y K Sbjct: 419 DGEYIRHWVGELASVDTEYLIGGNITPLERQ--GLGYPPPIVDHKKQQALFKQLYQQQK 475 >gi|325568101|ref|ZP_08144542.1| deoxyribodipyrimidine photolyase [Enterococcus casseliflavus ATCC 12755] gi|325158302|gb|EGC70453.1| deoxyribodipyrimidine photolyase [Enterococcus casseliflavus ATCC 12755] Length = 473 Score = 395 bits (1015), Expect = e-108, Method: Composition-based stats. Identities = 168/484 (34%), Positives = 258/484 (53%), Gaps = 26/484 (5%) Query: 7 MSVHLVWLRNDLRITDNKALYAACH--NSDAKVIAVFIATPEQWRQHGISARQSHFIYAS 64 M++H++W R DLR+ DN AL A ++ +++ VF +Q+ S + +++ Sbjct: 1 MAIHVMWFRKDLRLEDNTALTEALLSLQANDQLLCVFHLNEKQFLPDAPS---HDYFFSA 57 Query: 65 LLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLE 124 + +++ ++ + ++ + L + + ++L++N +RD ++ Sbjct: 58 VAHFIEAVKKQNLTIHLLTG-TLTEAFDQLFACYPEW--SQLYFNFDNRGYGRKRDLYIK 114 Query: 125 KRL-QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQ---NLVQADLRSLPVP 180 + + + V SF++ L P + YK +TP+ K IQ + Q Sbjct: 115 ELVEKKGVTVHSFEEHHLHQPTEVTKEDGTYYKKFTPYYKKWIQLPKPVYQKQALDFEKA 174 Query: 181 AIRLTGPVTPSNIPRFFD-YPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAI 239 A P + + + D +GE A L+ F ++++ Y + RD+P+I Sbjct: 175 AHFNDAPHFKAGTALLAEVLNNRKTDFSTIVGEDYAHKQLQAFVQKRLAAYEKDRDLPSI 234 Query: 240 QGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYP 299 +GTS+LSP+LS G +S R+ W + + P +G ++L EL WR+FY + +P Sbjct: 235 KGTSRLSPFLSFGQISIRKVWAACQ------GMPPSTGKATFLKELAWRDFYHMIYFTHP 288 Query: 300 SVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITAS 359 I ++W KD W+ G TG+PIIDAAMRQLN GWMHNRLRMI AS Sbjct: 289 EQ-KNYELIEKYRNMDWQKDEEAFNKWQAGQTGYPIIDAAMRQLNQTGWMHNRLRMIVAS 347 Query: 360 FLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFD 419 FL KDLL+DWR GE YF QL+D D ASN GGWQWAASTG D+VPYFRIFNP QGK+FD Sbjct: 348 FLTKDLLIDWRQGEAYFARQLIDYDAASNIGGWQWAASTGTDAVPYFRIFNPITQGKKFD 407 Query: 420 PQGTFIRHWLPELNNVPTQYIHAPHSWLDKND------LSLNYPLPIVDHKKACHHTLNQ 473 +GT+I+ ++PEL +P ++IH P+ D+ L +YPLPIVDH +A L+ Sbjct: 408 KEGTYIKQFVPELAQLPLKFIHEPYLMTDEEQADLKVVLGTDYPLPIVDHNEARKRALDL 467 Query: 474 YYAA 477 Y Sbjct: 468 YSKI 471 >gi|86749484|ref|YP_485980.1| deoxyribodipyrimidine photolyase [Rhodopseudomonas palustris HaA2] gi|86572512|gb|ABD07069.1| Deoxyribodipyrimidine photo-lyase type I [Rhodopseudomonas palustris HaA2] Length = 487 Score = 395 bits (1015), Expect = e-108, Method: Composition-based stats. Identities = 153/489 (31%), Positives = 230/489 (47%), Gaps = 26/489 (5%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATP-----EQWRQHGISARQSHFIYA 63 +VW R+DLR++D+ AL+AA S + +I +++ + I ++ Sbjct: 8 PVIVWFRDDLRLSDHPALHAAAA-SGSPLICIYVHDEQSPQLRPPQARPIGGAARWWLAQ 66 Query: 64 SLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNR-QYEINEVRRDKL 122 SL + L Q+G + + + Q + +N + + D L Sbjct: 67 SLRALAAELEQRGARLILRRGP----AAAIVGELARQVDAAAVHWNEIEIAPHRAIADDL 122 Query: 123 LEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPV--- 179 E + +L+ P I + +V+TPF + ++ P Sbjct: 123 AETLSMSGIDHHRHPGDLLVAPSEIRTKDGRGLRVFTPFWRRVLGLGDPPKPLPAPAMLR 182 Query: 180 --PAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIP 237 P I P T P D+ + + GE+ A +L F +++ Y RD P Sbjct: 183 AGPDIASDDPATWQLEPTAPDW-AGGLRASWTPGERAAHDLLTAFL-DRLPGYAADRDRP 240 Query: 238 AIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAF 297 TS LSP+L G +SPRQ W + + +L+EL WREF RHL+ Sbjct: 241 DRDATSLLSPHLRFGEISPRQLWYAAR-FAAAKRPAIAADIDKFLSELGWREFCRHLLHD 299 Query: 298 YPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMIT 357 +P + + + W +D L AW++G TG+PI+DA MRQL G MHNR+RM+ Sbjct: 300 HPDLAE-RNLQSAFDAFPWTRDDAALAAWQRGRTGYPIVDAGMRQLWHTGVMHNRIRMVV 358 Query: 358 ASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKR 417 ASFLVK LL+DWR+GEE+F L+D D SN G WQW A +G D+ PYFR+FNP +QG++ Sbjct: 359 ASFLVKHLLIDWRLGEEWFWDTLVDADPGSNPGNWQWVAGSGADAAPYFRVFNPILQGEK 418 Query: 418 FDPQGTFIRHWLPELNNVPTQYIHAPH------SWLDKNDLSLNYPLPIVDHKKACHHTL 471 FDP G ++R W+PE+ +P ++IH P L NYP PIVDHK L Sbjct: 419 FDPAGDYVRRWVPEIAALPNKFIHQPWTATLLERAAAGVALGGNYPAPIVDHKVGRARAL 478 Query: 472 NQYYAAKKQ 480 Y ++ Sbjct: 479 AAYAELRQS 487 >gi|39936242|ref|NP_948518.1| deoxyribodipyrimidine photolyase [Rhodopseudomonas palustris CGA009] gi|39650097|emb|CAE28620.1| Deoxyribodipyrimidine photolyase [Rhodopseudomonas palustris CGA009] Length = 483 Score = 395 bits (1015), Expect = e-108, Method: Composition-based stats. Identities = 152/495 (30%), Positives = 228/495 (46%), Gaps = 27/495 (5%) Query: 1 MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHF 60 M + +VW R+DLR+ D+ AL+AA S A V+ V++ + + Sbjct: 1 MLTPASSRPLIVWFRDDLRLADHPALHAAAQ-SGAPVLCVYVLDEVSDDVRALGGAVRWW 59 Query: 61 IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNR-QYEINEVRR 119 + SL ++ L G + L Q + +N + + Sbjct: 60 LAQSLRALESELRALGGALILRRGPT----AAVLAELAQQHDAAAVHWNEIEIAAHRAVA 115 Query: 120 DKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPV 179 D L + + L+ P +I + + +V+TPF + ++ + + LP Sbjct: 116 DALADALTVAGIAYHRHRGDTLVEPSAIRSKDGRGMRVFTPFWRRVLS--LGDPPQPLPR 173 Query: 180 PAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIG--------EQNALHILRKFCKEKVYYYV 231 P P P+ + D+ + P + G E A L F + Y Sbjct: 174 PTTLRPAPAVPTE--QLSDWQLEPTAPDWAGGLRQTWTPGEAAAQTRLAAFLAMQP-GYA 230 Query: 232 EQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFY 291 E RD P TS LSP+L G +SPRQ W + + +L+E+ WREF Sbjct: 231 EGRDYPDRHITSGLSPHLRFGEISPRQVWYAARFAAAERPAIA-PDIDKFLSEVGWREFC 289 Query: 292 RHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHN 351 RHL+ +P + + P + W D +L AW++G TG+PI+DA MR+L G MHN Sbjct: 290 RHLLFDHPDLA-SRNLQPAFDAFPWQSDDAVLTAWQRGRTGYPIVDAGMRELWHSGVMHN 348 Query: 352 RLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNP 411 R+RM+ SFLVK LL+DWR+GE++F L+D D SN G WQW A G D+ PYFR+FNP Sbjct: 349 RVRMVVGSFLVKHLLIDWRLGEQWFWDTLVDADPGSNPGNWQWVAGCGADAAPYFRVFNP 408 Query: 412 TIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHS------WLDKNDLSLNYPLPIVDHKK 465 +Q ++FD G +IR W+PEL +P IH P + L NYP PIVDHK Sbjct: 409 VLQSEKFDAGGAYIRRWVPELARLPNDLIHQPWTATPLELAAAGIKLGGNYPGPIVDHKT 468 Query: 466 ACHHTLNQYYAAKKQ 480 L+ Y +++ Sbjct: 469 GRQRALSAYAELRQR 483 >gi|83764373|dbj|BAE54523.1| cryptochrome [Marchantia paleacea var. diptera] gi|83764375|dbj|BAE54524.1| cryptochrome [Marchantia paleacea var. diptera] Length = 696 Score = 395 bits (1014), Expect = e-107, Method: Composition-based stats. Identities = 146/508 (28%), Positives = 236/508 (46%), Gaps = 38/508 (7%) Query: 1 MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHF 60 M A T +VW R DLR+ DN AL AA VI VFI +PE+ Q + Sbjct: 1 MAART-----IVWFRRDLRVEDNPALVAAARAG--IVIPVFIWSPEEDGQFHPGRVSRWW 53 Query: 61 IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120 + SL+ + SL G + D++ L Q T++FYN Y+ + RD Sbjct: 54 LKQSLIHLDSSLKSLGSPLIMRKSP---DTLTVLLDIVQQVGATQVFYNHLYDPVSLVRD 110 Query: 121 KLLEKRLQ-HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPV 179 +++ L H + +F+ +L P + + Q + + F + + + L Sbjct: 111 HRVKQGLSIHNIPVHTFNGDLLYEPWEVYDDEGQAFTTFDDFWDKCMNMPFEPEAPLL-S 169 Query: 180 PAIRLTGPVTPSNIPRFFDYPFQA---------IDPMFPIGEQNALHILRKFCKEKVYYY 230 P + P ++ R D + + + G +A L F K ++ Y Sbjct: 170 PRRLVGLPPGRISVGRIDDLGLENEYERSSNALLGRAWAPGWSSANKALEVFMKGPLHDY 229 Query: 231 VEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEF----VDLLIKPKSGAFSWLNELI 286 R TSQLSP+L G +S R+ ++ + + + + +L + Sbjct: 230 ATHRIKADNANTSQLSPHLHFGEVSVRKIFHEARTKQILWARENSYVGEQSVGMFLRAIG 289 Query: 287 WREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTI 346 +RE+ R+L +P + + + W D + ++W+QG TG+P++DA MR+L Sbjct: 290 FREYSRYLSFNFP-FTHERSLLANLKSFPWRIDENSFKSWRQGRTGYPLVDAGMRELWAT 348 Query: 347 GWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYF 406 GW+HNR+R++ +SF VK L + WR G +YF LLD DL + GWQ+ + + D Sbjct: 349 GWLHNRIRVVVSSFCVKFLQLPWRWGMKYFWDTLLDADLECDVLGWQYISGSLPDGHELD 408 Query: 407 RIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSW------LDKNDLSLNYPLPI 460 R+ NP I+G +FDP+G ++R WLPEL+ +PT++IH P +L NYPLPI Sbjct: 409 RMENPQIEGYKFDPEGEYVRRWLPELSRLPTEWIHHPWDAPANVLRAAGVELGSNYPLPI 468 Query: 461 VDHKKAC---HHTLNQYY---AAKKQSL 482 VD A +L + + AA K +L Sbjct: 469 VDISSARDQLQQSLAEMWEREAASKAAL 496 >gi|261876459|dbj|BAI47555.1| cryptochrome2 [Glycine max] Length = 642 Score = 395 bits (1014), Expect = e-107, Method: Composition-based stats. Identities = 137/477 (28%), Positives = 226/477 (47%), Gaps = 23/477 (4%) Query: 10 HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69 +VW R DLRI DN AL AA V+ V++ P++ Q ++ SL + Sbjct: 6 TIVWFRRDLRIEDNPALTAAAKEG--SVLPVYVWCPKEEGQFYPGRVSRWWLKQSLAHLD 63 Query: 70 KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL-Q 128 +SL G + + + L + TK+ +N Y+ + RD ++++L + Sbjct: 64 QSLKSLGSRLVLIKTHSTAVA---LVECVKAIQATKVVFNHLYDPVSLVRDHNIKEKLVE 120 Query: 129 HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188 + +S++ +L P + + + + + + F K + + P I G + Sbjct: 121 QGISVQSYNGDLLYEPWEVNSESGRAFTTFNAFWKKCLHVQMDIVSVVPPWQLIPAEGKI 180 Query: 189 TPSNIPRF-----FDYPFQAI-DPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGT 242 ++ + P A+ + G +NA LR+F + + +Y ++R + T Sbjct: 181 EECSLEELGLENESEKPSNALLGRAWSPGWRNADRALREFVELHLLHYSKKRLKVGGEST 240 Query: 243 SQLSPYLSIGVLSPRQCWNRLKEEF----VDLLIKPKSGAFSWLNELIWREFYRHLMAFY 298 S LSPYL G LS R+ + + + + A +L + RE+ R+L + Sbjct: 241 SLLSPYLHFGELSARKVFQVTCMKQILWTNEGNSAGEESANLFLRAIGLREYSRYLCFNF 300 Query: 299 PSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITA 358 P + + + WN D + + W+QG TGFP++DA MR+L GW+HNR+R+I + Sbjct: 301 P-FTHERALLGHLKFFPWNPDPDIFKTWRQGRTGFPLVDAGMRELWATGWIHNRIRVIVS 359 Query: 359 SFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRF 418 SF VK LL+ W+ G +YF LLD DL S+ GWQ+ + D R+ NP IQG +F Sbjct: 360 SFAVKMLLLPWKWGMKYFWDTLLDADLESDILGWQYISGGLPDGHELERLDNPEIQGAKF 419 Query: 419 DPQGTFIRHWLPELNNVPTQYIHAPHSW------LDKNDLSLNYPLPIVDHKKACHH 469 DP+G ++R WLPEL +PT++IH P +L NYP PI+D A Sbjct: 420 DPEGEYVRQWLPELARMPTEWIHHPWDAPLTVLRAAGVELGQNYPKPIIDIDLARER 476 >gi|21242230|ref|NP_641812.1| photolyase [Xanthomonas axonopodis pv. citri str. 306] gi|21107653|gb|AAM36348.1| photolyase [Xanthomonas axonopodis pv. citri str. 306] Length = 484 Score = 395 bits (1014), Expect = e-107, Method: Composition-based stats. Identities = 155/483 (32%), Positives = 224/483 (46%), Gaps = 17/483 (3%) Query: 4 TTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYA 63 MS +VW R DLR+ DN AL AA I ++I P + + A + + Sbjct: 10 RVRMSYAIVWFRRDLRLEDNPALRAALDAGHHP-IPLYIDAPHEEGEWTPGAASRTWRHR 68 Query: 64 SLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLL 123 SL + +L G +S + LD Q +++NR+YE RD + Sbjct: 69 SLAALDGALRALGSGLVIR----VGNSAQVLDEVIAQTGAVAVYWNRKYEPATQPRDAQI 124 Query: 124 EKRLQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAI 182 ++ L+ R I +S + ++L P + YKV+TPF + + L P Sbjct: 125 KRDLRERGIEVQSCNCALLFEPWQLSTQQGGPYKVFTPFWRNALTQLQLPAAIGAPRSLP 184 Query: 183 RLTGPVTPSNIPRFFDYPF----QAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPA 238 L + + P Q + GE A +L F + Y E RD P Sbjct: 185 PLPASLKTDALDTLQLVPGLQWDQGFWEHWQPGEAGAHEMLEIFIDGALSGYRENRDRPD 244 Query: 239 IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFY 298 GTSQLSP+L G ++P + N L+ + + +++ +L WR+F HL+ + Sbjct: 245 RVGTSQLSPHLHFGEIAPWRIANTLETH---RTARNGAEIDAYIRQLGWRDFAYHLLHHF 301 Query: 299 PSVCMGKPFIPWTEKIEWNK-DSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMIT 357 P + P +W D LQAW++G TG PI+DA MRQL GWMHNR+RMI Sbjct: 302 PD-TTNQNLNPRFAGFDWATVDPVALQAWQRGRTGIPIVDAGMRQLWHTGWMHNRVRMIV 360 Query: 358 ASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKR 417 ASFL K L + W G +F L+D DLA+N GWQW A TG D+ PYFR+FNP Q ++ Sbjct: 361 ASFLCKHLRIHWIEGARWFWDTLVDADLANNTLGWQWVAGTGADAAPYFRVFNPVTQAEK 420 Query: 418 FDPQGTFIRHWLPELNNVPTQYIHAPH-SWLDKNDLSLNYPL-PIVDHKKACHHTLNQYY 475 FDPQ +I W+PEL + + AP L L+ YP PI+ + L Y Sbjct: 421 FDPQAAYITRWVPELGKLAVKERFAPWLHPLSLARLAPEYPRTPIIGLAEGRDAALAAYA 480 Query: 476 AAK 478 + Sbjct: 481 KTR 483 >gi|222148397|ref|YP_002549354.1| DNA photolyase [Agrobacterium vitis S4] gi|221735385|gb|ACM36348.1| DNA photolyase [Agrobacterium vitis S4] Length = 483 Score = 394 bits (1013), Expect = e-107, Method: Composition-based stats. Identities = 158/484 (32%), Positives = 239/484 (49%), Gaps = 27/484 (5%) Query: 8 SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67 S ++W R DLR+ DN+A A + VI ++I PE+ + Q+ +++ SL+ Sbjct: 7 SPTILWFRKDLRLDDNRA-LLAALQAAGPVIPLYIREPEEMGTGPLGPAQAWWLHHSLVS 65 Query: 68 VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127 + +SL G + + L + + +NR+Y+ + + D L+ L Sbjct: 66 LDQSLQSYGSRLVLRRGPPG----QVLRHLIEETGSKAVHWNRRYDPSGMAIDAELKAAL 121 Query: 128 QHRV-ICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 + S +L P + + ++VYTPF +AL + P L Sbjct: 122 RSDGLEATSHAGFLLHEPSKVKTGSGGPFRVYTPFWRALEKQGDPPPPVERPKT---LHN 178 Query: 187 PVTPSNIPRFFDYPFQAIDP--------MFPIGEQNALHILRKFCKEKVYYYVEQRDIPA 238 P + R D+ P ++ GE A L +F + Y QRD PA Sbjct: 179 PAHWPDSDRLEDWQLLPTKPDWAKEFSEIWTPGEPGAQDKLSQFIDHGLKGYRTQRDFPA 238 Query: 239 IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFY 298 + TS LSP+L++G +SP + W+ D+ + EL+WREF HL+ + Sbjct: 239 LPHTSGLSPHLALGEISPARIWHATIGLGDDVSTDD---YVHFRKELVWREFSYHLLFHF 295 Query: 299 PSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITA 358 + + W K++ L AW++G TG+PI+DA MRQL G MHNR+RMI A Sbjct: 296 ADLASQN-WNDRFNDFPWKKNAEFLSAWQRGQTGYPIVDAGMRQLWRHGVMHNRVRMIVA 354 Query: 359 SFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRF 418 SFL+KDL++DWR GE +F L+D D ASN WQW A +G D+ P+FRIFNP Q ++F Sbjct: 355 SFLIKDLMIDWREGEAWFRYTLVDADPASNAASWQWVAGSGADASPFFRIFNPITQSEKF 414 Query: 419 DPQGTFIRHWLPELNNVPTQYIH----APHSWLDKNDLSLN--YPLPIVDHKKACHHTLN 472 DP G +IR ++PEL +P IH AP L+K ++L YP P+VDHK+A L Sbjct: 415 DPDGDYIRQFVPELAKLPNNLIHRPFEAPAPLLEKAGITLGKTYPAPLVDHKRARAVALE 474 Query: 473 QYYA 476 Y + Sbjct: 475 AYKS 478 >gi|296805628|ref|XP_002843638.1| deoxyribodipyrimidine photo-lyase [Arthroderma otae CBS 113480] gi|238844940|gb|EEQ34602.1| deoxyribodipyrimidine photo-lyase [Arthroderma otae CBS 113480] Length = 591 Score = 394 bits (1013), Expect = e-107, Method: Composition-based stats. Identities = 166/487 (34%), Positives = 241/487 (49%), Gaps = 49/487 (10%) Query: 11 LVWLRNDLRITDNKALYAA---CHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67 + W ++DLR+ DN++L+ A N D +I ++I +PE H S + I +L Sbjct: 100 VHWFKSDLRLQDNRSLHKAYSLARNYDIPLICIYIFSPEDLTAHLCSRPRVDLILRTLAI 159 Query: 68 VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127 ++ L ++ I D + + C Q ++F N +YE++E+RR+ + + Sbjct: 160 LKSDLEKQDIPLYMETQEKRKDIPKRIVELCKQWGANQIFTNLEYEVDELRREAKIVRLC 219 Query: 128 -QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQA-------------- 172 + +I + DD+ ++ PG + + Y VYTP+ ++ + L++ Sbjct: 220 ARQGIIFDTEDDTCVVAPGDLSTQQGKQYAVYTPWYRSWVAFLMEHPENLELVDAPTRNA 279 Query: 173 -DLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYV 231 D R P P+ + D Q M+P GE A L++F ++ Y Sbjct: 280 GDARKHFEELFHSQVPEAPT-YMQLSDSESQRFREMYPAGEHEADRRLKEFLAKRGNQYH 338 Query: 232 EQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFY 291 E RD + Q TS LSPY S G LS R +E V Sbjct: 339 ENRDFMSSQTTSVLSPYFSCGSLSARAAICMAQEANV----------------------- 375 Query: 292 RHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHN 351 +P +CM K P +EW D AW +G TGFPI+DAAMRQL WMHN Sbjct: 376 -----HWPYICMNKCLNPEFTNLEWEYDLAQFNAWCEGKTGFPIVDAAMRQLKHSAWMHN 430 Query: 352 RLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNP 411 R RMI +SFL KDLL+DWR+GE++FM L+DGD ASN+GGW + +STG D PYFRIFNP Sbjct: 431 RTRMIVSSFLSKDLLIDWRLGEQFFMKHLIDGDFASNHGGWGFGSSTGVDPQPYFRIFNP 490 Query: 412 TIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLN-YPLPIVDHKKACHHT 470 Q +RFDP G +IRHW+PEL N+ IH P+ + N YP PIV+H ++ Sbjct: 491 LRQSERFDPNGDYIRHWVPELRNIEGSAIHDPYGRGARETAEKNGYPRPIVNHSESRSKA 550 Query: 471 LNQYYAA 477 L +Y A Sbjct: 551 LERYKKA 557 >gi|313639222|gb|EFS04159.1| deoxyribodipyrimidine photo-lyase [Listeria seeligeri FSL S4-171] Length = 471 Score = 394 bits (1013), Expect = e-107, Method: Composition-based stats. Identities = 167/479 (34%), Positives = 245/479 (51%), Gaps = 25/479 (5%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 ++W R DLR+ DNKALY AC + D ++ +F PEQ+ + ++S+ Sbjct: 2 TSVMWFRRDLRLNDNKALYQACRDKDDLIL-LFQVNPEQFIN---GSPSHQAFFSSVAYF 57 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRV-TKLFYNRQYEINEVRRD-KLLEKR 126 ++ L + H F + + L+ + K+++NR +RD L+ Sbjct: 58 KQKLDK-----IAHLQIMFGEPMGLLEKLKEKIPAWDKVYFNRDETGYGAKRDEAALQFF 112 Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 + + ++ D+ L + A YKV+TP+ K + + + L Sbjct: 113 AKEEIEVFAYHDAYLHHANDVKKSATDFYKVFTPYYKKWREEIKERPLPISLNSEKVNKT 172 Query: 187 PVTPSNIPRFFDYPFQAID-PMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245 + P +F + + +GEQ A + L F KE + Y E RD P + TS L Sbjct: 173 ILFPEEEKQFAEMTRELPPLDATKLGEQAAQNHLNHFVKENLADYNEARDFPDLDKTSHL 232 Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305 S +L G +S R W ++E + +G ++ EL WR+FY + +P+ + Sbjct: 233 SRFLRTGEVSIRTVWQAVQEA------EHTNGRATFEKELCWRDFYNMIYVSFPNQ-KNE 285 Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365 IEW + Q W+QG TGFP++DAAMRQL GWMHNRLRMITASFL KDL Sbjct: 286 AIQANYRFIEWENNRTNFQKWQQGITGFPLVDAAMRQLKETGWMHNRLRMITASFLTKDL 345 Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425 L+DWR GE+YF L+D D ASN GGWQWAASTG D+VPYFRIFNPT Q ++FDP G FI Sbjct: 346 LIDWRWGEKYFQQMLIDYDPASNIGGWQWAASTGTDAVPYFRIFNPTTQSEKFDPSGNFI 405 Query: 426 RHWLPELNNVPTQYIHAPHSWLDKND------LSLNYPLPIVDHKKACHHTLNQYYAAK 478 R ++ EL +P ++IH P + + +YP PIVDHK+ + +Y +K Sbjct: 406 RKYVQELAGLPDKFIHQPEKMTKQEQEKFHLIIGEDYPFPIVDHKERRKLAIARYEFSK 464 >gi|126663929|ref|ZP_01734924.1| deoxyribodipyrimidine photolyase-class I [Flavobacteria bacterium BAL38] gi|126624193|gb|EAZ94886.1| deoxyribodipyrimidine photolyase-class I [Flavobacteria bacterium BAL38] Length = 428 Score = 394 bits (1013), Expect = e-107, Method: Composition-based stats. Identities = 156/473 (32%), Positives = 217/473 (45%), Gaps = 51/473 (10%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 +++ W R DLR+ DN L+ A NS V+ +FI E Q + FI+ L ++ Sbjct: 1 MNIFWFRRDLRLEDNVGLFHAL-NSTEDVLPIFIFDSEILSQLPKDDARVSFIHEQLEKI 59 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128 Q L++ G IE + +T ++ N YE +RDK + + Sbjct: 60 QSELNKIGKSLAVFHGKP----IEIFTQLISENTITSVYTNHDYEPYARKRDKEMNQLFT 115 Query: 129 HRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187 I + D V+ ++ Y VYTPF K +N + L Sbjct: 116 TNGISFLTSKDQVIFEKSEVVKDDGSPYVVYTPFSKKWKENFKKIKLVHYTSEDKLDKVA 175 Query: 188 VTPSNIPRFFDYPFQAID---PMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244 D F+ + F + E + Y R+ PA+ TS Sbjct: 176 KHSYPFLSLTDIGFEKSNIKVSAFDVSE------------NLIQNYEATRNFPALNKTSY 223 Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304 L YL G +S R+ + E D ++ NELIWREF+ ++ +P Sbjct: 224 LGIYLRFGAVSIRKMIAKAIAEKND----------TFWNELIWREFFMQILWHFPH-TYN 272 Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364 F P + I WN + L Q W +G TG+P +DA MR+LN+ G MHNR+RMI ASFL K Sbjct: 273 SSFRPKYDGIVWNNNEELFQKWCEGKTGYPFVDAGMRELNSTGHMHNRVRMIVASFLCKH 332 Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424 LL+DWR GE YF +LLD ++ASN G WQWAA +G D+ PYFRIFNPT Q K+FD + Sbjct: 333 LLIDWRWGETYFAQKLLDYEMASNVGNWQWAAGSGVDAAPYFRIFNPTEQIKKFDKDLKY 392 Query: 425 IRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477 I+ W+PEL T+Y YP PIVDHK+A L Y A Sbjct: 393 IKKWIPELE---TEY----------------YPKPIVDHKEARERCLKVYKEA 426 >gi|89900170|ref|YP_522641.1| deoxyribodipyrimidine photolyase [Rhodoferax ferrireducens T118] gi|89344907|gb|ABD69110.1| Deoxyribodipyrimidine photo-lyase type I [Rhodoferax ferrireducens T118] Length = 492 Score = 394 bits (1013), Expect = e-107, Method: Composition-based stats. Identities = 168/488 (34%), Positives = 238/488 (48%), Gaps = 24/488 (4%) Query: 10 HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69 L+W R DLR+ DN A + ++ VF+ + + R+ FI ASL ++ Sbjct: 8 GLMWFRRDLRVIDNAA-LCLALAACRQLHCVFVFDRDILDTLPRADRRVEFIRASLCELD 66 Query: 70 KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH 129 +L Q + E + + +V +F YE + RD + L H Sbjct: 67 VALGQLSGKAGVGLIVRHAVASEEIVTLAKTLQVQAVFAAHDYEPQALARDARVRGALAH 126 Query: 130 RVIC-KSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188 I + D V+ IL+ Y V+TP++ + + LR + Sbjct: 127 VGIVLHTCKDHVIFENREILSKTGTPYGVFTPYKNTWLATVTPQHLRHHDATPVAQALVP 186 Query: 189 TPSNIP----RFFDYPFQAIDP---MFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQG 241 P + F+ + P G + F E++ Y E RD+PA++G Sbjct: 187 RPEGLQQPVPTLAAIGFEKTNLSQLKIPTGASGGARLFEDFF-ERMDSYHETRDLPAVKG 245 Query: 242 TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSV 301 S L +L G +S RQ + I+ GA WL ELIWR+FY ++A +P V Sbjct: 246 PSYLGVHLRFGTVSVRQLAATALQRQ----IQGSRGAAVWLGELIWRDFYFSILANFPHV 301 Query: 302 CMGKPFIPWTEKIEWNKDSH---LLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITA 358 G F P + I+W H L QAW +G TG+P++DAAM Q+N G+MHNRLRM+ Sbjct: 302 AQG-AFKPEYDAIKWEHGKHADSLFQAWCEGRTGYPLVDAAMAQINQTGYMHNRLRMVAG 360 Query: 359 SFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRF 418 SFLVKDL +DWR GE+YF L D DLA+NNGGWQW +S+G D+ PYFRIFNP Q ++F Sbjct: 361 SFLVKDLGIDWRWGEKYFARHLNDFDLAANNGGWQWVSSSGCDAQPYFRIFNPVTQSEKF 420 Query: 419 DPQGTFIRHWLPELNNVPTQYIHAPHSWL------DKNDLSLNYPLPIVDHKKACHHTLN 472 D G FIR +LP+L +P++ IHAP + + L NYP PIV H A TL Sbjct: 421 DADGKFIRRYLPQLARLPSKVIHAPWTAQALELQMEGVTLGQNYPAPIVAHAAARALTLQ 480 Query: 473 QYYAAKKQ 480 +Y KK Sbjct: 481 RYAVVKKH 488 >gi|188575662|ref|YP_001912591.1| photolyase [Xanthomonas oryzae pv. oryzae PXO99A] gi|188520114|gb|ACD58059.1| photolyase [Xanthomonas oryzae pv. oryzae PXO99A] Length = 472 Score = 394 bits (1012), Expect = e-107, Method: Composition-based stats. Identities = 156/480 (32%), Positives = 228/480 (47%), Gaps = 17/480 (3%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 MS +VW R DLR+ DN AL AA I ++I P + + A + + SL Sbjct: 1 MSYAIVWFRRDLRLQDNPALRAALDAGHHP-IPLYIDAPHEEGEWTPGAASRTWRHRSLA 59 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 ++ +L G DS + LD+ Q +++NR+YE RD +++ Sbjct: 60 ALEDALRALGSGLVIR----AGDSAQVLDAVIAQTGAVAVYWNRKYEPATQPRDAQIKRA 115 Query: 127 LQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185 L+ R I +S + ++L P + YKV+TPF + + L P L Sbjct: 116 LRERGIEAQSCNCALLFEPWQLSTQQGGPYKVFTPFWRNALTQLQLPATAPAPRSLPPLP 175 Query: 186 GPVTPSNIPRFFDYPF----QAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQG 241 + + P Q + GE A +L F + Y + RD P G Sbjct: 176 AMLKTDALDTLQLVPSLNWDQGFWEHWHAGEAGAHEMLEFFIDGGLSGYRKNRDRPDRVG 235 Query: 242 TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSV 301 TSQLSP+L G ++P + + L+ + + ++ +L WR+F HL+ +P Sbjct: 236 TSQLSPHLHFGEIAPWRIASALE---AQRTARNGAEIDGYIRQLGWRDFAYHLLHHFPD- 291 Query: 302 CMGKPFIPWTEKIEWNK-DSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASF 360 + P E +W K D LQAW++G TG PI+DA MRQL GWMHNR+RMI ASF Sbjct: 292 TTNQNLNPRFEGFDWAKVDPVALQAWQRGRTGIPIVDAGMRQLWHTGWMHNRVRMIVASF 351 Query: 361 LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDP 420 L K L + W G +F L+D DLA+N GWQW A TG D+ PYFR+FNP Q ++FDP Sbjct: 352 LCKHLRIHWIEGARWFWDTLVDADLANNTLGWQWVAGTGADAAPYFRVFNPVTQAEKFDP 411 Query: 421 QGTFIRHWLPELNNVPTQYIHAPH-SWLDKNDLSLNYPL-PIVDHKKACHHTLNQYYAAK 478 T+I W+PEL +P + AP L + YP PI+ + L Y ++ Sbjct: 412 HATYITRWVPELGKLPVKERFAPWLHPLSLARFAPEYPRTPIIGLAEGRDAALAAYSKSR 471 >gi|45935264|gb|AAS79667.1| cryptochrome 2B apoprotein [Pisum sativum] gi|45935266|gb|AAS79668.1| cryptochrome 2B apoprotein [Pisum sativum] Length = 598 Score = 394 bits (1012), Expect = e-107, Method: Composition-based stats. Identities = 137/481 (28%), Positives = 228/481 (47%), Gaps = 23/481 (4%) Query: 6 AMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASL 65 M+ +VW R DLRI DN AL AA D V VFI P++ Q ++ SL Sbjct: 2 GMNRTIVWFRRDLRIEDNPALAAAAR--DGSVFPVFIWCPKEEGQFYPGRVSRWWMKQSL 59 Query: 66 LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125 + + +SL G + D +++ L + TK+ +N Y+ + RD +++ Sbjct: 60 VHLDQSLKSLGAGLVIIKT---DSTLKALLECVNAVQATKVVFNHLYDPVSLVRDHNIKE 116 Query: 126 RL-QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL 184 +L + V +S++ +L P I + + + + PF + ++ P I Sbjct: 117 KLVEQGVSVQSYNGDLLYEPWEIFDESGHAFTTFDPFWNTCLHMQMKTYSPIPPCQLILA 176 Query: 185 TGPVTPSNIPRF------FDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPA 238 G V +I + ++ + G + L +F + + +Y R Sbjct: 177 QGKVEKHSIEQLGLEDELEKSSNSSLGRSWSPGWSKSDKALAEFIENYLLHYSGNRLNLG 236 Query: 239 IQGTSQLSPYLSIGVLSPRQCWNRLKEEF----VDLLIKPKSGAFSWLNELIWREFYRHL 294 TS LSPY+ G LS R+ + + + + I + A +L + +RE+ R+L Sbjct: 237 GDSTSLLSPYIHFGELSVRKVFQLARTKQILWTHEGNIIGEESATLFLRAIGFREYSRYL 296 Query: 295 MAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLR 354 +P + +P + + WN D +AW+QG TG+P++DA MR+L GW+HN++R Sbjct: 297 CFSFP-FTLERPLLGNLKFFPWNNDPSNFKAWRQGRTGYPLVDAGMRELWATGWIHNKMR 355 Query: 355 MITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQ 414 +I +SF VK LL+ W+ G +YF LLD DL S+ GWQ+ + + D R+ +P + Sbjct: 356 VIVSSFAVKMLLIPWKWGMKYFWDTLLDADLESDILGWQYISGSLPDGHKLERLDDPEVL 415 Query: 415 GKRFDPQGTFIRHWLPELNNVPTQYIHAPHSW------LDKNDLSLNYPLPIVDHKKACH 468 G+++DP G +IR WLPEL +P ++IH P +L NYP PI+D A Sbjct: 416 GRKYDPAGEYIRQWLPELARMPAEWIHHPWDAPLTVLTASGVELGQNYPKPIIDIDLARE 475 Query: 469 H 469 Sbjct: 476 Q 476 >gi|81298923|ref|YP_399131.1| deoxyribodipyrimidine photo-lyase type I [Synechococcus elongatus PCC 7942] gi|79621|pir||S00757 deoxyribodipyrimidine photo-lyase (EC 4.1.99.3) [validated] - Synechococcus sp. (Anacystis nidulans) gi|48425154|pdb|1OWL|A Chain A, Structure Of Apophotolyase From Anacystis Nidulans gi|48425155|pdb|1OWM|A Chain A, Data1:dna Photolyase RECEIVED X-Rays Dose 1.2 Exp15 PhotonsMM2 gi|48425156|pdb|1OWN|A Chain A, Data3:dna Photolyase RECEIVED X-Rays Dose 4.8 Exp15 PhotonsMM2 gi|48425157|pdb|1OWO|A Chain A, Data4:photoreduced Dna Photolyase RECEIVED X-Rays Dose 1.2 Exp15 PhotonsMM2 gi|48425158|pdb|1OWP|A Chain A, Data6:photoreduced Dna Pholyase RECEIVED X-Rays Dose 4.8 Exp15 PhotonsMM2 gi|157833609|pdb|1QNF|A Chain A, Structure Of Photolyase gi|580717|emb|CAA30190.1| unnamed protein product [Synechococcus elongatus PCC 6301] gi|81167804|gb|ABB56144.1| Deoxyribodipyrimidine photo-lyase type I [Synechococcus elongatus PCC 7942] Length = 484 Score = 394 bits (1012), Expect = e-107, Method: Composition-based stats. Identities = 168/479 (35%), Positives = 232/479 (48%), Gaps = 23/479 (4%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 L W R DLR++DN L AA S A++I +F P+ + ++ + ++ L ++Q+ Sbjct: 6 LFWHRRDLRLSDNIGLAAARAQS-AQLIGLFCLDPQILQSADMAPARVAYLQGCLQELQQ 64 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130 Q G Q D + Q + +++N+ E RD + L+ Sbjct: 65 RYQQAGSRLLLLQG----DPQHLIPQLAQQLQAEAVYWNQDIEPYGRDRDGQVAAALKTA 120 Query: 131 VI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQAD------LRSLPVPAIR 183 I D +L P IL+ + Y VY PF K L L + Sbjct: 121 GIRAVQLWDQLLHSPDQILSGSGNPYSVYGPFWKNWQAQPKPTPVATPTELVDLSPEQLT 180 Query: 184 LTGPVTPSNIPRFFDYPFQAIDPMFP--IGEQNALHILRKFCKEKVYYYVEQRDIPAIQG 241 P+ S +P F D FP GE A+ L++FC + Y QR+ PA G Sbjct: 181 AIAPLLLSELPTLKQLGFDW-DGGFPVEPGETAAIARLQEFCDRAIADYDPQRNFPAEAG 239 Query: 242 TSQLSPYLSIGVLSPRQCWNRLKEEFV-DLLIKPKSGAFSWLNELIWREFYRHLMAFYPS 300 TS LSP L G + RQ W + ++ W EL WREFY+H + +PS Sbjct: 240 TSGLSPALKFGAIGIRQAWQAASAAHALSRSDEARNSIRVWQQELAWREFYQHALYHFPS 299 Query: 301 VCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASF 360 + G P+ ++ W L AW Q TG+PI+DAAMRQL GWMHNR RMI ASF Sbjct: 300 LADG-PYRSLWQQFPWENREALFTAWTQAQTGYPIVDAAMRQLTETGWMHNRCRMIVASF 358 Query: 361 LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDP 420 L KDL++DWR GE++FM L+DGDLA+NNGGWQW+AS+G D P RIFNP Q K+FD Sbjct: 359 LTKDLIIDWRRGEQFFMQHLVDGDLAANNGGWQWSASSGMDPKP-LRIFNPASQAKKFDA 417 Query: 421 QGTFIRHWLPELNNV-PTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478 T+I+ WLPEL +V P I + +++ YP PIV+H Y K Sbjct: 418 TATYIKRWLPELRHVHPKDLISGEITPIERR----GYPAPIVNHNLRQKQFKALYNQLK 472 >gi|153007684|ref|YP_001368899.1| deoxyribodipyrimidine photo-lyase [Ochrobactrum anthropi ATCC 49188] gi|151559572|gb|ABS13070.1| Deoxyribodipyrimidine photo-lyase [Ochrobactrum anthropi ATCC 49188] Length = 484 Score = 394 bits (1012), Expect = e-107, Method: Composition-based stats. Identities = 174/472 (36%), Positives = 250/472 (52%), Gaps = 21/472 (4%) Query: 10 HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATP-EQWRQHGISARQSHFIYASLLQV 68 LVWLRNDLRI DN AL AA + AV++ + R G + R ++ SL + Sbjct: 21 ALVWLRNDLRINDNPALDAAAETG-GHITAVYVHETVAEIRAPGCAVR--WWLDQSLEAI 77 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128 +K L+ +GI D L + VT+LF+NR+Y E D L+ +L+ Sbjct: 78 RKQLADRGIELLIETGDPRD----ILPQLIAKLAVTELFWNRRYAPAEREFDANLKAQLK 133 Query: 129 HRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187 SF ++LL P + + Y+V+TPF KAL + + L Sbjct: 134 ESGTGVTSFPGNLLLEPWELKTASDTPYQVFTPFAKALRHHHIPRPLSRRQWDIKPTQET 193 Query: 188 VTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSP 247 N+P + + D ++ IGE A L +F + + Y E RD+P I GTS+LSP Sbjct: 194 CYSPNVPAWA----KKFDGLWNIGEDAARDCLTRFLENTLSTYTEDRDVPGIDGTSRLSP 249 Query: 248 YLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPF 307 +L G +S RQ W F+D ++G +L+ELIWR+F H + + Sbjct: 250 HLRFGEISARQAWYATL-AFMDEHHSARAGGEKFLSELIWRDFNYHQLYHRRDISRH-DM 307 Query: 308 IPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLV 367 I W D +AW++G TGFPIIDA MRQL GWMHNR+RM+ ASFL K+LL+ Sbjct: 308 RDTLSGIAWRDDRAAFEAWRRGQTGFPIIDAGMRQLWATGWMHNRVRMLVASFLTKNLLI 367 Query: 368 DWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRH 427 DWR GEE+F L+DGD+ASN G WQW A G D+ PYFR+FNP +QG++FD +G ++RH Sbjct: 368 DWRKGEEWFWDTLVDGDIASNPGSWQWVAGCGMDAAPYFRVFNPILQGEKFDAEGQYVRH 427 Query: 428 WLPELNNVPTQYIH----APHSWLDKNDLSLN--YPLPIVDHKKACHHTLNQ 473 W+PEL+ + +++H AP L ++L YP PI+D + + + Sbjct: 428 WVPELSGLSNKWLHKPFEAPKDVLTSAGIALGSTYPKPIIDLQASQREARKR 479 >gi|15675407|ref|NP_269581.1| putative deoxyribodipyrimidine photolyase [Streptococcus pyogenes M1 GAS] gi|71911049|ref|YP_282599.1| deoxyribodipyrimidine photolyase [Streptococcus pyogenes MGAS5005] gi|13622594|gb|AAK34302.1| putative deoxyribodipyrimidine photolyase [Streptococcus pyogenes M1 GAS] gi|71853831|gb|AAZ51854.1| deoxyribodipyrimidine photolyase [Streptococcus pyogenes MGAS5005] Length = 469 Score = 394 bits (1012), Expect = e-107, Method: Composition-based stats. Identities = 176/480 (36%), Positives = 247/480 (51%), Gaps = 22/480 (4%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 V ++W R DLRI D KAL A S + + VF EQ S QS FI S+L Sbjct: 2 VSVMWFRRDLRIDDQKALAHAIA-SQSPTLCVFQFNKEQLNLLH-SRNQSSFIT-SVLAF 58 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128 +K L +GI + L T +++N RD+ + + Sbjct: 59 RKLLKCEGIDLYLMYGDLMTCFEQLLTQLK---DWTDVYFNYDESGYGRLRDQKAAQFFK 115 Query: 129 HRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187 I ++ D L I+N + Q YKV+TP+ + + ++ + + R Sbjct: 116 KNGIAVHTYQDHYLHGSQEIINQSGQPYKVFTPYYRIWQNYPKETPIK-VELSQGRWLNL 174 Query: 188 VTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSP 247 TP ++ R + F+ A L +F ++++ Y RD PA GTS+LSP Sbjct: 175 ETPDDVLRTVE-SFKDEKYQDVATFDEASKQLNRFIQDQLAAYHANRDFPAQLGTSRLSP 233 Query: 248 YLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPF 307 +L IG + R ++ +++ G ++L EL WR+FY + YP +P Sbjct: 234 FLRIGAIGIRTVYHAVRQA------PNSLGQATFLKELAWRDFYNMVYVAYPDQ-KTQPI 286 Query: 308 IPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLV 367 +IEW + Q WK+G TG+PI+DAAM QL GWMHNRLRMI ASFL KDLL Sbjct: 287 QKAFSQIEWVNNPDWFQLWKEGKTGYPIVDAAMLQLQKTGWMHNRLRMIVASFLTKDLLC 346 Query: 368 DWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRH 427 DWR+GE+YF QL+D D ASN GGWQWAASTG D+VPYFRIFNP QGKRFDP+G FI+ Sbjct: 347 DWRLGEQYFQQQLIDYDAASNIGGWQWAASTGTDAVPYFRIFNPVTQGKRFDPKGEFIKA 406 Query: 428 WLPELNNVPTQYIHAPHSWLD------KNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481 +LP+L +VP +Y+H P + +YP PIVDH K + +Y AK+++ Sbjct: 407 YLPQLEHVPEKYLHEPWKMPKNLQESVSCIIGTDYPQPIVDHAKQREQAIAKYEWAKEKA 466 >gi|746118|prf||2017201A DNA photolyase Length = 486 Score = 393 bits (1011), Expect = e-107, Method: Composition-based stats. Identities = 168/477 (35%), Positives = 241/477 (50%), Gaps = 24/477 (5%) Query: 12 VWLRNDLRITDNKALYAACHN---SDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 VW R D R+ D+ AL A K +A F P + + + + +++Q Sbjct: 16 VWFRRDFRLHDHTALKHAIEAIEKHGGKWLAFFYLDP---KTASVEPVHHDYFFQTVMQF 72 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128 ++ L G + + L + + ++ N + RD+ E L Sbjct: 73 KQMLKTNGGDLYIITGTIEGGQLSKLLQAFPE--IDAVYANDDRVGDGRLRDEAAEHFLA 130 Query: 129 HR-VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL--T 185 + + +F+D+ L P +L YKV+TP+ KA + + + Sbjct: 131 KQSIPFYTFEDAYLTEPDQVLKKDGTPYKVFTPYYKAWAKERKRTPAVIKRDVLLGSVHK 190 Query: 186 GPVTPSNIPRFFDYPFQAIDPMF-PIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244 G F+ + + IGE++A+ L+ F K+++ Y RD P+I GTS+ Sbjct: 191 GTAPDREAETLFNNLIKKCSYDWSAIGEEHAIKRLQMFTKKRLSGYKANRDFPSITGTSR 250 Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304 LSPY+ G +S R + + D A ++L EL WR+FYR + + P C Sbjct: 251 LSPYIKTGAVSSRSIYYHILNAEADSY-----SAETFLKELAWRDFYRMVHFYEPD-CKD 304 Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364 + + ++ W+ D L +WK+G TGFPI+DA MRQL GWMHNRLRMITASFL KD Sbjct: 305 REIMEGYRELNWSHDQDDLTSWKRGETGFPIVDAGMRQLLNEGWMHNRLRMITASFLTKD 364 Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424 LL+DWR+GE YF L+D D +SN GGWQWAAS G D+VPYFRIFNP Q KRFD GT+ Sbjct: 365 LLIDWRLGERYFERMLIDYDPSSNIGGWQWAASVGTDAVPYFRIFNPVTQSKRFDENGTY 424 Query: 425 IRHWLPELNNVPTQYIHAPHSWLD------KNDLSLNYPLPIVDHKKACHHTLNQYY 475 IR ++PELN+VP YIH P + K L +YPLPIVDH K L+ + Sbjct: 425 IRTYIPELNHVPDHYIHEPWKMSEEEQVKYKCRLDEDYPLPIVDHSKQRKKALSFFK 481 >gi|58176791|pdb|1TEZ|A Chain A, Complex Between Dna And The Dna Photolyase From Anacystis Nidulans gi|58176792|pdb|1TEZ|B Chain B, Complex Between Dna And The Dna Photolyase From Anacystis Nidulans gi|58176793|pdb|1TEZ|C Chain C, Complex Between Dna And The Dna Photolyase From Anacystis Nidulans gi|58176794|pdb|1TEZ|D Chain D, Complex Between Dna And The Dna Photolyase From Anacystis Nidulans Length = 474 Score = 393 bits (1011), Expect = e-107, Method: Composition-based stats. Identities = 168/479 (35%), Positives = 232/479 (48%), Gaps = 23/479 (4%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 L W R DLR++DN L AA S A++I +F P+ + ++ + ++ L ++Q+ Sbjct: 5 LFWHRRDLRLSDNIGLAAARAQS-AQLIGLFCLDPQILQSADMAPARVAYLQGCLQELQQ 63 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130 Q G Q D + Q + +++N+ E RD + L+ Sbjct: 64 RYQQAGSRLLLLQG----DPQHLIPQLAQQLQAEAVYWNQDIEPYGRDRDGQVAAALKTA 119 Query: 131 VI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQAD------LRSLPVPAIR 183 I D +L P IL+ + Y VY PF K L L + Sbjct: 120 GIRAVQLWDQLLHSPDQILSGSGNPYSVYGPFWKNWQAQPKPTPVATPTELVDLSPEQLT 179 Query: 184 LTGPVTPSNIPRFFDYPFQAIDPMFP--IGEQNALHILRKFCKEKVYYYVEQRDIPAIQG 241 P+ S +P F D FP GE A+ L++FC + Y QR+ PA G Sbjct: 180 AIAPLLLSELPTLKQLGFDW-DGGFPVEPGETAAIARLQEFCDRAIADYDPQRNFPAEAG 238 Query: 242 TSQLSPYLSIGVLSPRQCWNRLKEEFV-DLLIKPKSGAFSWLNELIWREFYRHLMAFYPS 300 TS LSP L G + RQ W + ++ W EL WREFY+H + +PS Sbjct: 239 TSGLSPALKFGAIGIRQAWQAASAAHALSRSDEARNSIRVWQQELAWREFYQHALYHFPS 298 Query: 301 VCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASF 360 + G P+ ++ W L AW Q TG+PI+DAAMRQL GWMHNR RMI ASF Sbjct: 299 LADG-PYRSLWQQFPWENREALFTAWTQAQTGYPIVDAAMRQLTETGWMHNRCRMIVASF 357 Query: 361 LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDP 420 L KDL++DWR GE++FM L+DGDLA+NNGGWQW+AS+G D P RIFNP Q K+FD Sbjct: 358 LTKDLIIDWRRGEQFFMQHLVDGDLAANNGGWQWSASSGMDPKP-LRIFNPASQAKKFDA 416 Query: 421 QGTFIRHWLPELNNV-PTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478 T+I+ WLPEL +V P I + +++ YP PIV+H Y K Sbjct: 417 TATYIKRWLPELRHVHPKDLISGEITPIERR----GYPAPIVNHNLRQKQFKALYNQLK 471 >gi|21230891|ref|NP_636808.1| photolyase-like protein [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66769110|ref|YP_243872.1| photolyase-like protein [Xanthomonas campestris pv. campestris str. 8004] gi|21112501|gb|AAM40732.1| photolyase-like protein [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66574442|gb|AAY49852.1| photolyase-like protein [Xanthomonas campestris pv. campestris str. 8004] Length = 484 Score = 393 bits (1010), Expect = e-107, Method: Composition-based stats. Identities = 159/480 (33%), Positives = 229/480 (47%), Gaps = 17/480 (3%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 MS +VW R DLR+ DN AL AA I ++I P + Q A + + SL Sbjct: 13 MSYAIVWFRRDLRLEDNPALRAALDAGHDP-IPLYIDAPHEEGQWAPGAASRAWRHRSLA 71 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 + SL +G Q DS + LD+ Q +++NR+YE RD +++ Sbjct: 72 ALDASLRARGSALLIRQG----DSAQVLDAVIAQTEAVAVYWNRKYEPATQPRDAQIKRS 127 Query: 127 LQHRV-ICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185 L+ R +S + ++L P ++ + YKV+TPF + + L D P L Sbjct: 128 LRERGLEVQSCNAALLFEPWTLATQQGRPYKVFTPFWRNALTQLRLPDAMPAPRSLPPLP 187 Query: 186 GPVTPSNIPRFFDYPFQAIDP----MFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQG 241 + ++ P A D + GE A +L F + Y E RD P G Sbjct: 188 ASLDGVHVDALNLLPTPAWDQGFWEHWQPGEAGAHEMLEIFVDGALSGYRENRDRPDRVG 247 Query: 242 TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSV 301 TSQLSP+L G ++P + + L+ + + ++ +L WR+F HL+ +P Sbjct: 248 TSQLSPHLHFGEIAPWRIASTLE---AQRSARNGADIDGYIRQLGWRDFAYHLLHHFPDT 304 Query: 302 CMGKPFIPWTEKIEWNK-DSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASF 360 P +W D L AW++G TG PI+DA +RQL GWMHNR+RMI AS Sbjct: 305 TTQN-LNPRFAGFDWATVDPVTLDAWQRGRTGIPIVDAGLRQLWHTGWMHNRVRMIVASL 363 Query: 361 LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDP 420 L K L V W G +F L+D DLA+N GWQW A TG D+ PYFR+FNP Q ++FDP Sbjct: 364 LCKHLRVHWLEGARWFWDTLVDADLANNTMGWQWVAGTGADAAPYFRVFNPVTQAEKFDP 423 Query: 421 QGTFIRHWLPELNNVPTQYIHAPH-SWLDKNDLSLNYP-LPIVDHKKACHHTLNQYYAAK 478 Q T+I W+PEL +P + AP L L+ YP PI+ + L Y + Sbjct: 424 QATYITRWIPELAALPVKERFAPWLHPLSLARLAPTYPRAPIIGLAEGRDAALAAYAGTR 483 >gi|288553212|ref|YP_003425147.1| deoxyribodipyrimidine photolyase PhrB [Bacillus pseudofirmus OF4] gi|298286845|sp|Q04449|PHR_BACPE RecName: Full=Deoxyribodipyrimidine photo-lyase; AltName: Full=DNA photolyase; AltName: Full=Photoreactivating enzyme gi|288544372|gb|ADC48255.1| Deoxyribodipyrimidine photolyase, FAD-binding PhrB [Bacillus pseudofirmus OF4] Length = 479 Score = 393 bits (1010), Expect = e-107, Method: Composition-based stats. Identities = 168/477 (35%), Positives = 242/477 (50%), Gaps = 25/477 (5%) Query: 12 VWLRNDLRITDNKALYAACHN---SDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 VW R D R+ D+ AL A K +A F P + + + + +++Q Sbjct: 10 VWFRRDFRLHDHTALKHAIEAIEKHGGKWLAFFYLDP---KTASVEPVHHDYFFQTVMQF 66 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128 ++ L G + + L ++ + ++ N + RD+ E L Sbjct: 67 KQMLKTNGGDLYIITGTIEGALSKLLQAFP---EIDAVYANDDRVGDGRLRDEAAEHFLA 123 Query: 129 HR-VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL--T 185 + + +F+D+ L P +L YKV+TP+ KA + + + Sbjct: 124 KQSIPFYTFEDAYLTEPDQVLKKDGTPYKVFTPYYKAWAKERKRTPAVIKRDVLLGSVHK 183 Query: 186 GPVTPSNIPRFFDYPFQAIDPMF-PIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244 G F+ + + IGE++A+ L+ F K+++ Y RD P+I GTS+ Sbjct: 184 GTAPDREAETLFNNLIKKCSYDWSAIGEEHAIKRLQMFTKKRLSGYKANRDFPSITGTSR 243 Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304 LSPY+ G +S R + + D A ++L EL WR+FYR + + P C Sbjct: 244 LSPYIKTGAVSSRSIYYHILNAEADSY-----SAETFLKELAWRDFYRMVHFYEPD-CKD 297 Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364 + + ++ W+ D L +WK+G TGFPI+DA MRQL GWMHNRLRMITASFL KD Sbjct: 298 REIMEGYRELNWSHDQDDLTSWKRGETGFPIVDAGMRQLLNEGWMHNRLRMITASFLTKD 357 Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424 LL+DWR+GE YF L+D D +SN GGWQWAAS G D+VPYFRIFNP Q KRFD GT+ Sbjct: 358 LLIDWRLGERYFERMLIDYDPSSNIGGWQWAASVGTDAVPYFRIFNPVTQSKRFDENGTY 417 Query: 425 IRHWLPELNNVPTQYIHAPHSWLD------KNDLSLNYPLPIVDHKKACHHTLNQYY 475 IR ++PELN+VP YIH P + K L +YPLPIVDH K L+ + Sbjct: 418 IRTYIPELNHVPDHYIHEPWKMSEEEQVKYKCRLDEDYPLPIVDHSKQRKKALSFFK 474 >gi|91977566|ref|YP_570225.1| deoxyribodipyrimidine photolyase [Rhodopseudomonas palustris BisB5] gi|91684022|gb|ABE40324.1| Deoxyribodipyrimidine photo-lyase type I [Rhodopseudomonas palustris BisB5] Length = 487 Score = 393 bits (1010), Expect = e-107, Method: Composition-based stats. Identities = 149/497 (29%), Positives = 232/497 (46%), Gaps = 27/497 (5%) Query: 1 MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWR-----QHGISA 55 M T V +VW R+DLR++D+ AL+ A S +I +++ + + + Sbjct: 1 MPNNTPRPV-IVWFRDDLRLSDHPALHQAAA-SGGPLICIYVFDEDSAQLRSPQARPLGG 58 Query: 56 RQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNR-QYEI 114 ++ SL + SL ++G + + + Q + + +N + Sbjct: 59 ASRWWLAQSLRALAASLEKRGARLILRRGP----AAAIIAELARQVDASAVHWNEIEIAP 114 Query: 115 NEVRRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADL 174 + D L E + +L P + + +V+TPF + ++ L Sbjct: 115 HRAVADDLAEALSVAGIDHHRHRGDLLASPAEVRTKEGRGLRVFTPFWRRVLGLGDPPKL 174 Query: 175 RSLPVPAIRLTGPV-----TPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYY 229 P GP + P D+ + + GE A L F + + Sbjct: 175 LPAPKTLSAAQGPSGDQLDSWMLEPTEPDW-AGGLRESWTPGEGAAQDNLTAFL-DALPG 232 Query: 230 YVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWRE 289 Y E RD P TS+LSP+L G +SPRQ W + + +L+EL WRE Sbjct: 233 YTEGRDRPDCAATSRLSPHLRFGEISPRQVWYAARFAAAERPAIA-GDIDKFLSELGWRE 291 Query: 290 FYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWM 349 F RHL+ +P + + + W D+ L AW++G TG+PI+DA MR+L G M Sbjct: 292 FCRHLLHDHPDLAE-RNLQASFDAFPWITDAAALHAWQRGCTGYPIVDAGMRELWHTGVM 350 Query: 350 HNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIF 409 HNR+RM+ ASFLVK LL+DWR GE++F L+D D SN WQW A +G D+ PYFR+F Sbjct: 351 HNRVRMVVASFLVKHLLIDWRCGEQWFWDTLVDADAGSNPANWQWVAGSGADAAPYFRVF 410 Query: 410 NPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHS------WLDKNDLSLNYPLPIVDH 463 NP +QG++FDP G ++R W+PEL ++P ++IH P + L NYP PI+DH Sbjct: 411 NPILQGEKFDPAGDYVRRWVPELASLPAKFIHQPWTATPFELAAAGVTLGGNYPEPIIDH 470 Query: 464 KKACHHTLNQYYAAKKQ 480 + L Y ++ Sbjct: 471 RVGRERALAAYAKTRQH 487 >gi|187927713|ref|YP_001898200.1| Deoxyribodipyrimidine photo-lyase [Ralstonia pickettii 12J] gi|187724603|gb|ACD25768.1| Deoxyribodipyrimidine photo-lyase [Ralstonia pickettii 12J] Length = 518 Score = 393 bits (1010), Expect = e-107, Method: Composition-based stats. Identities = 167/490 (34%), Positives = 247/490 (50%), Gaps = 31/490 (6%) Query: 10 HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGI----SARQSHFIYASL 65 LVW R DLR D+ AL+ A + +V VF+ + + R+ FI AS+ Sbjct: 20 GLVWFRRDLRHFDHAALHYALRHC-REVYCVFVFDRDILDALLARGLQADRRIEFIRASI 78 Query: 66 LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125 +++ +L + G D + + + +F N E + RD+ + K Sbjct: 79 EELRSALREAGGDLMVVH----DHPRHAIPEIARKLNIEAVFANHDEEPSAQARDEAVRK 134 Query: 126 RLQHR-VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL 184 L + F D V+ ILN + Y V+TP++ A + L DLR+ P Sbjct: 135 VLAQQPCAWFDFKDQVIFERDEILNGQGRPYGVFTPYKNAWLAALTPFDLRAYPTEPYLG 194 Query: 185 TGPVTPSNI----PRFFDYPFQA---IDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIP 237 P + P F + P G +L +F ++++ Y +RD P Sbjct: 195 ALARPPEALAHPTPALEAMGFAHTNLSEIALPTGMSGGQALLDEF-EDRMDDYHARRDFP 253 Query: 238 AIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAF 297 A++G S LS +L G +S R R +++ GA +WL+EL+WR+FY ++ Sbjct: 254 AVRGPSYLSTHLRFGTVSIRTLAARAHA----AMLRGSRGAATWLSELVWRDFYFMILHH 309 Query: 298 YPSVCMGKPFIPWTEKIEW---NKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLR 354 P + G F P ++I W + +AWK TG+P++DAAM Q+ G+MHNRLR Sbjct: 310 RPDLADGAAFHPEFDRIRWVDGDTGDARFEAWKGAQTGYPLVDAAMLQIFQSGYMHNRLR 369 Query: 355 MITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQ 414 M+ ASFL+KDL +DWR GE+YF L D D ++NNGGWQWAAS+G D+ P+FRIFNP Q Sbjct: 370 MVAASFLIKDLGIDWRRGEQYFADVLNDFDFSANNGGWQWAASSGCDAQPWFRIFNPVTQ 429 Query: 415 GKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWL------DKNDLSLNYPLPIVDHKKACH 468 ++FDPQG FIR +LP+L +P +YIHAP + L YP PI+DH A Sbjct: 430 SEKFDPQGRFIRKYLPQLAKLPDKYIHAPWTAPANVLKEAGVVLGETYPRPIIDHAGARA 489 Query: 469 HTLNQYYAAK 478 TL++Y K Sbjct: 490 ATLDRYAVTK 499 >gi|242208527|ref|XP_002470114.1| hypothetical DNA photolyase [Postia placenta Mad-698-R] gi|220730866|gb|EED84717.1| hypothetical DNA photolyase [Postia placenta Mad-698-R] Length = 543 Score = 393 bits (1009), Expect = e-107, Method: Composition-based stats. Identities = 180/524 (34%), Positives = 263/524 (50%), Gaps = 62/524 (11%) Query: 11 LVWLR-NDLRITDNKALYAACHNSDA---KVIAVFIATPEQWRQHGISARQSHFIYASLL 66 + W+R DLR DN+AL A + +IA+F+ +P + H SAR+ F +L Sbjct: 18 VYWMRIEDLRTRDNRALAQASEQAREDHVPLIALFVLSPHDYIAHDRSARRIDFTLRNLR 77 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 ++ SL++ + + + ++ S + T+L+ N +YE++E+RRD + + Sbjct: 78 CIRSSLAELHVPLYTTTHTPRTNIPSYVLSLLNEWNATRLYANIEYEVDELRRDIKVCEL 137 Query: 127 LQH-RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQ-----ADLRSLPVP 180 + +V C D ++PPG +L + Y VY+PF +A +L L P P Sbjct: 138 AREKKVACTFVHDKCIIPPGKVLTKGEKGYTVYSPFLRAWTPHLTPSKGEADPLACAPSP 197 Query: 181 AIRLTGPVTPSNIPRFFD---------------YPFQAIDPMFPIGEQNALHILRKFC-- 223 A + FD I +P GE A IL +F Sbjct: 198 AANSPSIHNHPVYGKLFDQSVPDEVDGFSLQDTEERDRIRTCWPAGEDAAKEILERFVNT 257 Query: 224 --------------------------KEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPR 257 ++ Y + RD TS+LSPYL+ GV+S R Sbjct: 258 MARSEQMGAVNPLSNGAKVPTKSPTKDSRIGKYKDARDKVDADTTSRLSPYLAAGVISAR 317 Query: 258 QCWNRLKEEFVDLLIK----PKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEK 313 +C + K ++G+ W+ E+ WR+FY H++A +P V MG+PF Sbjct: 318 ECIRATMQLSASKAPKVDVSRETGSGRWVQEIAWRDFYTHVVALFPRVSMGRPFQEKLSS 377 Query: 314 IEWNKDS--HLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRI 371 I+W D+ LQAWK G TG PI+DA MRQ +GWMHNR+RM+ A +LVKDL++DWR+ Sbjct: 378 IKWEADTAGDHLQAWKDGRTGVPIVDAGMRQALAMGWMHNRVRMVAAMYLVKDLMIDWRL 437 Query: 372 GEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPE 431 GE++FM L+DGDLASNNGGWQW+ASTG D PYFRIFNP Q ++ DP G +IR+++PE Sbjct: 438 GEKHFMETLIDGDLASNNGGWQWSASTGVDPAPYFRIFNPYTQSQKADPTGDYIRYFVPE 497 Query: 432 LNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYY 475 L NV IH P L L YP P+V H +A + +Y Sbjct: 498 LANVRGADIHNPPPALAD---KLGYPRPLVKHDEARQRAIRRYK 538 >gi|116671293|ref|YP_832226.1| deoxyribodipyrimidine photo-lyase type I [Arthrobacter sp. FB24] gi|116611402|gb|ABK04126.1| deoxyribodipyrimidine photo-lyase type I [Arthrobacter sp. FB24] Length = 474 Score = 393 bits (1009), Expect = e-107, Method: Composition-based stats. Identities = 159/484 (32%), Positives = 238/484 (49%), Gaps = 24/484 (4%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M +VWLR+DLR+ DN AL A + V+I E + +++ SL+ Sbjct: 1 MPSTIVWLRDDLRLDDNPALADAAAMGH-PLTVVYILDEESPGVRPLGGAAKWWLHHSLV 59 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 + L G + S + + T L +NR+Y E D ++ Sbjct: 60 SLAGGLEAAGSRLVLRRGSAAG----IIQELAAETGATHLRWNRRYGGPERSIDAGVKAW 115 Query: 127 LQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQ----NLVQADLRSLPVPA 181 + + SF S++ P ++ A YKV+TPF +A ++ + +LP PA Sbjct: 116 AGEQGLDAASFQASLMFEPWTVRTGAGGPYKVFTPFWRACLESGEPRIPSDGPGTLPHPA 175 Query: 182 IRLTG-PVTPSNIPRFFDYP-----FQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRD 235 G P ++ + P + + GE A L+ F V Y RD Sbjct: 176 GHGDGGPPQSDDLDSWALLPRTPDWSAGLAEQWTPGEAGAHSRLKDFLDGPVEEYGTGRD 235 Query: 236 IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLM 295 P ++GTS+LSP+L G +SP + W+ L+E F + + + +EL WREF L+ Sbjct: 236 RPGVEGTSRLSPHLRFGEISPFRIWHALRERFPR---QAPADVGIFRSELGWREFCWQLL 292 Query: 296 AFYPSVCMGKPFIPWTEKIEWNKDSHL-LQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLR 354 P + + + P ++ EW S L+AW+QG TG+P++DA MRQL GWMHNR+R Sbjct: 293 YENPELA-SRNYRPDFDRFEWQTPSDAELEAWQQGRTGYPLVDAGMRQLWQTGWMHNRVR 351 Query: 355 MITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQ 414 M ASFLVK+LL DWR+GE +F L+D D ASN WQW A +G D+ PYFRIFNP Q Sbjct: 352 MAAASFLVKNLLADWRLGEAWFWDTLVDADSASNPANWQWVAGSGADASPYFRIFNPVTQ 411 Query: 415 GKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQY 474 K+FD G ++R ++PE+ N+ + IH P +L+ YP P+V ++ L Y Sbjct: 412 SKKFDAAGRYLREFIPEIANLSEKEIHEPWK---APELAAGYPEPLVGLPESRERALETY 468 Query: 475 YAAK 478 K Sbjct: 469 QKLK 472 >gi|312889452|ref|ZP_07749004.1| Deoxyribodipyrimidine photo-lyase [Mucilaginibacter paludis DSM 18603] gi|311298004|gb|EFQ75121.1| Deoxyribodipyrimidine photo-lyase [Mucilaginibacter paludis DSM 18603] Length = 437 Score = 393 bits (1009), Expect = e-107, Method: Composition-based stats. Identities = 150/479 (31%), Positives = 225/479 (46%), Gaps = 46/479 (9%) Query: 6 AMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQ-HGISARQSHFIYAS 64 +V + W R DLR+ DN LY A V+ +FI E Q + FIY + Sbjct: 2 KQTVSIFWFRRDLRLDDNAGLYYALK-GGHPVLPLFIFDTEILNQLEDREDARVTFIYQT 60 Query: 65 LLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLE 124 + + L ++ + ++ + + + + ++ N YE RD L+ Sbjct: 61 IEALNNELREQQSSSILIKYNSTG---QAWNEVLAEYDIAAVYTNHDYEPYARHRDAELK 117 Query: 125 KRL-QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPA-I 182 + Q + ++ D V+ G ++ + Y V+TP+++ L L+ P + Sbjct: 118 ELFTQKNIEFYTYKDQVIFEKGEVVKDDQKPYTVFTPYKRKWYDKLKPFYLKPYPTRKYL 177 Query: 183 RLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGT 242 +P +P F FP K K + Y EQRD PAI+GT Sbjct: 178 DNISKTSPFQLPTLKSMGFAESKTHFP----------DKQYKTIIAGYHEQRDFPAIKGT 227 Query: 243 SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVC 302 S + +L G +S RQ +WLNELIWREFY ++ +P Sbjct: 228 SHIGLHLRFGTVSIRQLATDAYGAEEK----------TWLNELIWREFYMMILYHFPQTA 277 Query: 303 MGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLV 362 F P ++I W + +AW +G TG+P++DA MR+LN G+MHNR+RM+ ASFL Sbjct: 278 DH-AFKPEYDRIRWRNNETEFKAWCEGKTGYPLVDAGMRELNATGYMHNRVRMVVASFLS 336 Query: 363 KDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQG 422 K LL+DWR GE YF +LLD ++ASN GGWQWAA +G D+ PYFR+FNP +Q K+FDP+ Sbjct: 337 KHLLIDWRWGERYFARKLLDYEMASNVGGWQWAAGSGTDAAPYFRVFNPELQLKKFDPKL 396 Query: 423 TFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481 +++ W+PE + YP PIVDH A L + A +S Sbjct: 397 QYVKKWVPEYADFSK------------------YPEPIVDHAFARERCLKVFKEALSKS 437 >gi|325914014|ref|ZP_08176370.1| deoxyribodipyrimidine photo-lyase type I [Xanthomonas vesicatoria ATCC 35937] gi|325539783|gb|EGD11423.1| deoxyribodipyrimidine photo-lyase type I [Xanthomonas vesicatoria ATCC 35937] Length = 472 Score = 393 bits (1009), Expect = e-107, Method: Composition-based stats. Identities = 158/480 (32%), Positives = 225/480 (46%), Gaps = 17/480 (3%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 MS +VW R DLR+ DN AL AA I ++I P + + A + + SL Sbjct: 1 MSYAIVWFRRDLRLQDNPALRAALDAGHDP-IPLYIDAPHEEGEWAPGAASRSWRHRSLA 59 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 + +L G DS + LD Q +++NR+YE RD +++ Sbjct: 60 ALDDTLRALGSGLVIR----AGDSAQVLDEVIAQTGAVAVYWNRKYEPATQPRDAQIKRN 115 Query: 127 LQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185 L+ R I +S + ++L P + YKV+TPF + + L P L Sbjct: 116 LRERGIEVQSCNAALLFEPWQLSTQQGGPYKVFTPFWRNALTQLQLPAAVPAPRSLPPLP 175 Query: 186 GPVTPSNIPRFFDYPFQAID----PMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQG 241 + + P D + GE A +L F + Y E RD P G Sbjct: 176 ATLETVALESLALLPRLDWDHGFWEHWQPGEAGAHEMLEIFIDGALDGYRENRDRPDRVG 235 Query: 242 TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSV 301 TSQLSP+L G ++P + + L+ + + ++ +L WR+F HL+ +P Sbjct: 236 TSQLSPHLHFGEIAPWRIASTLE---AQRNARNAAEIDGYIRQLGWRDFSYHLLHHFPD- 291 Query: 302 CMGKPFIPWTEKIEWNK-DSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASF 360 + P E +W K D LQAW++G TG PI+DA MRQL GWMHNR+RMI AS Sbjct: 292 TTNQNLNPRFEGFDWAKADPVALQAWQRGRTGIPIVDAGMRQLWHTGWMHNRVRMIVASL 351 Query: 361 LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDP 420 L K L V W G +F L+D DLA+N GWQW A TG D+ PYFR+FNP Q ++FDP Sbjct: 352 LCKHLRVHWLDGARWFWDTLVDADLANNTMGWQWVAGTGADAAPYFRVFNPVTQAEKFDP 411 Query: 421 QGTFIRHWLPELNNVPTQYIHAPH-SWLDKNDLSLNYPL-PIVDHKKACHHTLNQYYAAK 478 Q T+I W+PEL + + AP L L+ YP PI+ + L Y + Sbjct: 412 QATYITRWVPELGKLAVKERFAPWLHPLSLARLAPEYPRSPIIGLAEGRDAALAAYAKTR 471 >gi|21910695|ref|NP_664963.1| putative deoxyribodipyrimidine photolyase [Streptococcus pyogenes MGAS315] gi|28895615|ref|NP_801965.1| deoxyribodipyrimidine photolyase [Streptococcus pyogenes SSI-1] gi|21904898|gb|AAM79766.1| putative deoxyribodipyrimidine photolyase [Streptococcus pyogenes MGAS315] gi|28810864|dbj|BAC63798.1| putative deoxyribodipyrimidine photolyase [Streptococcus pyogenes SSI-1] Length = 469 Score = 392 bits (1008), Expect = e-107, Method: Composition-based stats. Identities = 176/480 (36%), Positives = 247/480 (51%), Gaps = 22/480 (4%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 V ++W R DLRI D KAL A S + + VF EQ S QS FI S+L Sbjct: 2 VSVMWFRRDLRIDDQKALAHAIA-SQSPTLCVFQFNNEQLNLLH-SRNQSSFIT-SVLAF 58 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128 +K L +GI + L T +++N RD+ + + Sbjct: 59 RKLLKCEGIDLYLMYGDLMTCFEQLLTQLK---DWTDVYFNYDESGYGRLRDQKAAQFFK 115 Query: 129 HRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187 I ++ D L I+N + Q YKV+TP+ + + ++ + + R Sbjct: 116 KNGIAVHTYQDHYLHGSQEIINQSGQPYKVFTPYYRIWQNYPKETPIK-VELSQGRWLNL 174 Query: 188 VTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSP 247 TP ++ R + F+ A L +F ++++ Y RD PA GTS+LSP Sbjct: 175 ETPDDVLRTVE-SFKDEKYQDVATFDEASKQLNRFIQDQLAAYHANRDFPAQLGTSRLSP 233 Query: 248 YLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPF 307 +L IG + R ++ +++ G ++L EL WR+FY + YP +P Sbjct: 234 FLRIGAIGIRTVYHAVRQA------PNSLGQATFLKELAWRDFYNMVYVAYPDQ-KTQPI 286 Query: 308 IPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLV 367 +IEW + Q WK+G TG+PI+DAAM QL GWMHNRLRMI ASFL KDLL Sbjct: 287 QKAFSQIEWVNNPDWFQLWKEGKTGYPIVDAAMLQLQKTGWMHNRLRMIVASFLTKDLLC 346 Query: 368 DWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRH 427 DWR+GE+YF QL+D D ASN GGWQWAASTG D+VPYFRIFNP QGKRFDP+G FI+ Sbjct: 347 DWRLGEQYFQQQLIDYDAASNIGGWQWAASTGTDAVPYFRIFNPVTQGKRFDPKGEFIKA 406 Query: 428 WLPELNNVPTQYIHAPHSWLD------KNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481 +LP+L +VP +Y+H P + +YP PIVDH K + +Y AK+++ Sbjct: 407 YLPQLEHVPEKYLHEPWKMPKYLQESVSCIIGTDYPQPIVDHAKQREQAIAKYEWAKEKA 466 >gi|88800847|ref|ZP_01116402.1| putative deoxyribodipyrimidine photolyase [Reinekea sp. MED297] gi|88776420|gb|EAR07640.1| putative deoxyribodipyrimidine photolyase [Reinekea sp. MED297] Length = 465 Score = 392 bits (1008), Expect = e-107, Method: Composition-based stats. Identities = 177/472 (37%), Positives = 260/472 (55%), Gaps = 17/472 (3%) Query: 9 VHLVWLRNDLRITDNKALYAACHNS---DAKVIAVFIATPEQWRQHGISARQSHFIYASL 65 LVW RNDLR++D++AL+ A + + V A+F + QWR HG + +++L Sbjct: 2 TQLVWFRNDLRVSDHEALFQALNRAKQQQTPVRALFFWSDAQWRSHGAGDAKIAATFSAL 61 Query: 66 LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125 + + L++ GI S + + E + +YC ++T + Y+ + NE+RRD + + Sbjct: 62 QALHQKLAKLGIPLDVLSVSWWTECAEQMVNYCQSHQITAIHYHTEPGWNELRRDDRVAQ 121 Query: 126 RLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185 +L V + D + P L Q+YKV+T ++K+L++ L + P R Sbjct: 122 QLSKSVELHRYHDLYFIDPAHHLTQQGQVYKVFTAYKKSLLRQFSIDHLATFP---PRKA 178 Query: 186 GPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245 GP + D P P+ E AL L FC+E V Y ++RD PA GTSQL Sbjct: 179 GPALKVSPLAMKDLPNWQNPLQLPVTEDQALTRLDAFCEE-VRDYADRRDFPADNGTSQL 237 Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305 S L++G S RQ + L + L + ++ +E+IWR+FY++L+ P +C+G+ Sbjct: 238 SAALALGCTSSRQVAHTLHRHHISL------ASDTFFSEIIWRDFYKYLLFHTPRLCLGE 291 Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365 P+ + W K+ L+ W++G TG PI+DAAMRQL GWMHNRLRM+T +LVK L Sbjct: 292 PYNEKWDAFPWQKNETWLERWREGKTGVPIVDAAMRQLRETGWMHNRLRMVTGMYLVKIL 351 Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425 DWR GE +F L D D A+NNGGWQW ASTG D+VPYFRIFNP Q KRFDP G FI Sbjct: 352 QQDWRQGEAWFAEHLADFDFAANNGGWQWVASTGVDAVPYFRIFNPYQQSKRFDPNGQFI 411 Query: 426 RHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477 ++ ELN+V +H L + YP P+ D+ KA TL+++ A Sbjct: 412 LTFVTELNDVKPALLHDHKRALSVSS----YPKPLTDYSKARQDTLDKFKAL 459 >gi|139473471|ref|YP_001128187.1| deoxyribodipyrimidine photolyase [Streptococcus pyogenes str. Manfredo] gi|134271718|emb|CAM29951.1| putative deoxyribodipyrimidine photolyase [Streptococcus pyogenes str. Manfredo] Length = 469 Score = 392 bits (1007), Expect = e-107, Method: Composition-based stats. Identities = 172/480 (35%), Positives = 240/480 (50%), Gaps = 22/480 (4%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 V ++W R DLRI D KAL A S + + VF EQ S QS FI S+L Sbjct: 2 VSVMWFRRDLRIDDQKALAHAIA-SQSPTLCVFQFNKEQLNLLH-SRNQSSFIT-SVLAF 58 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128 +K L +GI + L T +++N RD+ + + Sbjct: 59 RKLLKCEGIDLYLMYGDLMTCFEQLLTQLK---DWTDVYFNYDESGYGRLRDQKAAQFFK 115 Query: 129 HRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187 I ++ D L I+N + Q YKV+TP+ + + ++ L Sbjct: 116 KNGIAVHTYQDHYLHGSQEIINQSGQPYKVFTPYYRIWQNYPKETPIKVELSQGRWLNLE 175 Query: 188 VTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSP 247 + + + E A L +F ++++ Y RD PA GTS+LSP Sbjct: 176 TPDDVLRTVESIKDEKYQDVATFDE--ASKQLNRFIQDQLAAYHANRDFPAQLGTSRLSP 233 Query: 248 YLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPF 307 +L IG + R ++ +++ G ++L EL WR+FY + YP +P Sbjct: 234 FLRIGAIGIRTVYHAVRQA------PNSLGQATFLKELAWRDFYNMVYVAYPDQ-KTQPI 286 Query: 308 IPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLV 367 +IEW + Q WK+G TG+PI+DAAM QL GWMHNRLRMI ASFL KDLL Sbjct: 287 QKAFSQIEWVNNPDWFQLWKEGKTGYPIVDAAMLQLQKTGWMHNRLRMIVASFLTKDLLC 346 Query: 368 DWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRH 427 DWR+GE+YF QL+D D ASN GGWQWAASTG D+VPYFRIFNP Q KRFDP+G FI+ Sbjct: 347 DWRLGEQYFQQQLIDYDAASNIGGWQWAASTGTDAVPYFRIFNPVTQSKRFDPKGEFIKA 406 Query: 428 WLPELNNVPTQYIHAPHSWLD------KNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481 +LP+L +VP +Y+H P + +YP PIVDH K + +Y AK+++ Sbjct: 407 YLPQLEHVPEKYLHEPWKMPKYLQESVSCIIGTDYPQPIVDHAKQREQAIAKYEWAKEKA 466 >gi|220905687|ref|YP_002480998.1| Deoxyribodipyrimidine photo-lyase [Cyanothece sp. PCC 7425] gi|219862298|gb|ACL42637.1| Deoxyribodipyrimidine photo-lyase [Cyanothece sp. PCC 7425] Length = 475 Score = 392 bits (1007), Expect = e-107, Method: Composition-based stats. Identities = 169/478 (35%), Positives = 240/478 (50%), Gaps = 17/478 (3%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 L W R DLRI DN L AA AKV+ VF P + ++ + ++ SL +Q+ Sbjct: 6 LFWHRRDLRIADNVGL-AAARQRTAKVVGVFCLDPNLLERDDVAPARVAYMIGSLQHLQQ 64 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH- 129 Q G + + +F+N E RD+ ++ L+ Sbjct: 65 QYVQSGSQLLILH----QQPTIAIPQLATALQAKAVFWNWDVEPYSQERDRTVQTALETV 120 Query: 130 RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSL------PVPAIR 183 + ++F D +L PP +I + + Y V++PF + + + + SL + Sbjct: 121 GIEVQNFWDQLLHPPAAIKTGSGEAYTVFSPFWRNWSRQPKEPPVPSLATATGLTPTEQQ 180 Query: 184 LTGPVTPSNIPRFFDYPFQAIDPM-FPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGT 242 V +P D F P+ GE A L +FC+ +Y Y ++R+ PA GT Sbjct: 181 AADQVGAIALPTAKDLGFIWDTPLPLEPGETAAQERLEQFCQRAIYAYQQERNFPATTGT 240 Query: 243 SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIK-PKSGAFSWLNELIWREFYRHLMAFYPSV 301 SQLS L GVL R W + + + +W EL WREFY+H + ++P++ Sbjct: 241 SQLSAALKFGVLGIRTVWATTQSALESSRSQEAEDSIQTWQQELAWREFYQHALYWFPAL 300 Query: 302 CMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFL 361 G + + W QAW +G TG+PI+DAAMRQ+NTIGWMHNR RMI ASFL Sbjct: 301 AEG-AYRQPFKTFPWQNRPDYFQAWCEGRTGYPIVDAAMRQMNTIGWMHNRCRMIVASFL 359 Query: 362 VKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQ 421 KDLL+D R GE+YFM +L+DGDLA+NNGGWQW+AS+G D P RIFNP Q ++FDP+ Sbjct: 360 TKDLLIDPRWGEKYFMQKLVDGDLAANNGGWQWSASSGMDPKP-LRIFNPASQSQKFDPE 418 Query: 422 GTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479 +IR WLPEL +V T + L++ D YPL IVDH Y K+ Sbjct: 419 ADYIREWLPELRSVETADLVTGKISLEERDR-CGYPLAIVDHHHQQRLFKQLYEQQKR 475 >gi|134302129|ref|YP_001122098.1| deoxyribodipyrimidine photolyase [Francisella tularensis subsp. tularensis WY96-3418] gi|134049906|gb|ABO46977.1| deoxyribodipyrimidine photolyase [Francisella tularensis subsp. tularensis WY96-3418] Length = 464 Score = 392 bits (1006), Expect = e-107, Method: Composition-based stats. Identities = 158/483 (32%), Positives = 246/483 (50%), Gaps = 30/483 (6%) Query: 6 AMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASL 65 + + + W R DLR+ DN ALY + I +FI Q I + +++ SL Sbjct: 2 SKKIAIHWFRQDLRLADNPALYQVSQADET--ITIFILDKNQ----DIGSASKLWLHHSL 55 Query: 66 LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125 + SL K ++ + +E + + +T ++NR Y+ + RD +++ Sbjct: 56 NSLNSSLDNK---LNFYSG----NPLEIIKKIIKENNITDFYWNRCYDKYSIDRDTQIKQ 108 Query: 126 RLQ-HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPA-IR 183 LQ H++ SF+ S+L+ P YKVYTPF K LI+ + P + +R Sbjct: 109 FLQQHKINVNSFNGSLLIEPWQCKKDDGTHYKVYTPFYKELIKIRKYRSNIAKPNFSYLR 168 Query: 184 LTGPVTPSNIPRFFD--YPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQG 241 + + + + +Q I + IGE + IL +F KV Y RD + Sbjct: 169 KLNNSENLDSLKLIEPKHSWQNIIKQWQIGESASHQILEEFLDNKVKEYKTARDFMSTDS 228 Query: 242 TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSV 301 TS+LSPYL G +SP Q +N ++ L + ++ EL+WR+F + + +YP + Sbjct: 229 TSKLSPYLHFGEISPNQIFNAVQ-----SLDYIGNNEEHFIKELVWRDFSYYQIYYYPEL 283 Query: 302 CMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFL 361 K + +W+ D LL+ W++G TG PI+DA MR+L G+MHNR+RMI ASFL Sbjct: 284 -HNKNINQKFDSFKWDNDPTLLKKWQKGQTGIPIVDAGMRELWQAGYMHNRVRMIVASFL 342 Query: 362 VKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQ 421 +K+ L+ W+ GE++F L D D ASNN WQW A G D+ PYFRIFNP +Q ++F+ Sbjct: 343 IKNCLIHWKYGEKWFFDTLFDADFASNNANWQWVAGCGLDAAPYFRIFNPVLQAEKFEAY 402 Query: 422 GTFIRHWLPELNNVPTQYIHAPHS----WLDKNDLSL--NYPLPIVDHKKACHHTLNQYY 475 +IR ++PEL +P + I P L + ++L NYP PIVD KK+ L + Sbjct: 403 -EYIRKYVPELKLLPNKLIAKPWEASELVLQEAGITLGQNYPKPIVDLKKSRDRALQLHN 461 Query: 476 AAK 478 K Sbjct: 462 QIK 464 >gi|261855425|ref|YP_003262708.1| deoxyribodipyrimidine photo-lyase [Halothiobacillus neapolitanus c2] gi|261835894|gb|ACX95661.1| Deoxyribodipyrimidine photo-lyase [Halothiobacillus neapolitanus c2] Length = 490 Score = 392 bits (1006), Expect = e-106, Method: Composition-based stats. Identities = 157/494 (31%), Positives = 228/494 (46%), Gaps = 29/494 (5%) Query: 9 VHLVWLRNDLRITDNKALYAACHNS--DAKVIAVFIA--------TPEQWRQHGISARQS 58 +VW R DLR+ D+ AL AA +I V+I T + + A Sbjct: 2 TTIVWFRQDLRLGDHPALDAAIQTGADQGHIIPVYIHPGYAPSDQTADATKPLYEGAAAR 61 Query: 59 HFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVR 118 + + SL + + L+ G Q + + L + + ++ +NR+ E Sbjct: 62 WWRHHSLRSLAERLASCGSRLIIRQG----EPLAELQRLIHETKANRVVWNRRMEPAARA 117 Query: 119 RDKLLEKRLQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSL 177 D ++ L+ I SF+ + L P +I N + +KV+TP+ KA++ + Sbjct: 118 EDTRIKAALRAEGINVDSFNGNYLHEPWTIQNKQGKPFKVFTPYWKAVVAAGLDLPTYPE 177 Query: 178 PVPAIRLTGPVTPSNIPRFFDYPFQAIDP----MFPIGEQNALHILRKFCKEKVYYYVEQ 233 P + + I P A D + GE A F + Y E Sbjct: 178 PDNLPTVPRALNSLAIDELELLPAIAWDKDFYNHWQPGEPGAWSRFEDFLP-LIDEYAEA 236 Query: 234 RDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRH 293 R+ G S+LS +L G +SPRQ L + +L G ++ EL WREF + Sbjct: 237 RNHLIGTGVSKLSAHLHFGEISPRQIVRYLLDTRGSVLEP--RGIEHFVRELGWREFGAY 294 Query: 294 LMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRL 353 L YP + P +W L+AW++G TG P++DAAMR L GWMHNR Sbjct: 295 LAYHYPQ-TVDAPLDARFLNFKWRDAPDDLRAWQRGQTGIPVVDAAMRCLWQTGWMHNRA 353 Query: 354 RMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTI 413 RMI ASFL K+LL+DWR G +FM L+D D SN GWQW A TG D+ PYFRIFNP + Sbjct: 354 RMIVASFLTKNLLIDWRCGAAWFMDTLVDADEPSNTAGWQWTAGTGADAAPYFRIFNPVL 413 Query: 414 QGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKN------DLSLNYPLPIVDHKKAC 467 Q ++FDP GTFIR W+PEL + +Y+ AP + + L YP PI D K + Sbjct: 414 QAEKFDPDGTFIRRWVPELARLENKYLFAPWTASETALAQAGIVLGKTYPEPISDLKVSR 473 Query: 468 HHTLNQYYAAKKQS 481 L + K+ + Sbjct: 474 QRALVHFDQIKQNT 487 >gi|188992258|ref|YP_001904268.1| Putative photolyase [Xanthomonas campestris pv. campestris str. B100] gi|167734018|emb|CAP52224.1| Putative photolyase [Xanthomonas campestris pv. campestris] Length = 520 Score = 391 bits (1005), Expect = e-106, Method: Composition-based stats. Identities = 159/480 (33%), Positives = 228/480 (47%), Gaps = 17/480 (3%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 MS +VW R DLR+ DN AL AA I ++I P + Q A + + SL Sbjct: 49 MSYAIVWFRRDLRLEDNPALRAALDAGHDP-IPLYIDAPHEEGQWAPGAASRAWRHRSLA 107 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 + SL +G Q DS + LD+ Q +++NR+YE RD +++ Sbjct: 108 ALDASLRARGSALLIRQG----DSAQVLDAVIAQTEAVAVYWNRKYEPATQPRDAQIKRS 163 Query: 127 LQHRV-ICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185 L+ R +S + ++L P ++ YKV+TPF + + L D P L Sbjct: 164 LRERGLEVQSCNAALLFEPWTLATQQGGPYKVFTPFWRNALTQLRLPDAMPAPRSLPPLP 223 Query: 186 GPVTPSNIPRFFDYPFQAIDP----MFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQG 241 + ++ P A D + GE A +L F + Y E RD P G Sbjct: 224 ASLDGVHVDALNLLPTPAWDQGFWEHWQPGEAGAHEMLEIFVDGALSGYRENRDRPDRVG 283 Query: 242 TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSV 301 TSQLSP+L G ++P + + L+ + + ++ +L WR+F HL+ +P Sbjct: 284 TSQLSPHLHFGEIAPWRIASTLE---AQRSARNGADIDGYIRQLGWRDFAYHLLHHFPDT 340 Query: 302 CMGKPFIPWTEKIEWNK-DSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASF 360 P +W D L AW++G TG PI+DA +RQL GWMHNR+RMI AS Sbjct: 341 TTQN-LNPRFAGFDWATVDPVTLDAWQRGRTGIPIVDAGLRQLWHTGWMHNRVRMIVASL 399 Query: 361 LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDP 420 L K L V W G +F L+D DLA+N GWQW A TG D+ PYFR+FNP Q ++FDP Sbjct: 400 LCKHLRVHWLEGARWFWDTLVDADLANNTMGWQWVAGTGADAAPYFRVFNPVTQAEKFDP 459 Query: 421 QGTFIRHWLPELNNVPTQYIHAPH-SWLDKNDLSLNYP-LPIVDHKKACHHTLNQYYAAK 478 Q T+I W+PEL +P + AP L L+ YP PI+ + L Y + Sbjct: 460 QATYITRWIPELAALPVKERFAPWLHPLSLARLAPTYPRAPIIGLAEGRDAALAAYAGTR 519 >gi|8101444|gb|AAF72556.1|AF130425_1 cryptochrome 2 [Solanum lycopersicum] gi|8101446|gb|AAF72557.1|AF130426_1 cryptochrome 2 [Solanum lycopersicum] Length = 635 Score = 391 bits (1005), Expect = e-106, Method: Composition-based stats. Identities = 140/491 (28%), Positives = 229/491 (46%), Gaps = 29/491 (5%) Query: 10 HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69 +VW R DLRI DN AL AA N V+ VFI P++ Q ++ SL+ ++ Sbjct: 7 TIVWFRRDLRIEDNPALAAAARNG--SVLPVFIWCPKEEGQFYPGRVSRWWLKQSLIHLK 64 Query: 70 KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH 129 +SL G + ++ L TK+ YN Y+ + RD ++++L Sbjct: 65 QSLKSLGAELVLMKA---QSTLSALTECVDAVGATKVVYNHLYDPVSLVRDHNIKQKLGD 121 Query: 130 RVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188 I +S++ +L P + + KV+T F ++L + +P RLT Sbjct: 122 LGISVQSYNGDLLNEPWEVYDDDG---KVFTTFDAYWEKSLSIQNEPVSQLPPWRLTQAA 178 Query: 189 TPSNIPRFFDYPFQA---------IDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAI 239 + + + + + G NA L +F + + Y + R Sbjct: 179 GSVKMCSVEELGLENESEKSSNALLGKGWAPGWSNADKALTEFVESNLLAYSKDRLRVGG 238 Query: 240 QGTSQLSPYLSIGVLSPRQCWNRLKEEF----VDLLIKPKSGAFSWLNELIWREFYRHLM 295 TS LSPYL G +S R+ +N ++ + + K A +L + RE+ R++ Sbjct: 239 NSTSLLSPYLHFGEVSVRKVFNSVRLKQILWTKEGNSVGKDSATIYLRAIGLREYSRYIC 298 Query: 296 AFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRM 355 +P + + WN D +AW+QG TG+P++DA MR+L GW+HN++R+ Sbjct: 299 FNFP-FTHERSLLNNLRFFPWNADQAHFKAWRQGRTGYPLVDAGMRELWATGWVHNKIRV 357 Query: 356 ITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQG 415 I +SF VK LL+ W+ G +YF LLD DL S+ GWQ+ + + D R+ NP +QG Sbjct: 358 IVSSFFVKFLLLPWQWGMKYFWDTLLDADLESDIIGWQYISGSLPDGHELERLDNPEVQG 417 Query: 416 KRFDPQGTFIRHWLPELNNVPTQYIHAPHSW------LDKNDLSLNYPLPIVDHKKACHH 469 +DP+G ++RHWLPEL +P ++IH P +L +NYP PI+D A Sbjct: 418 FNYDPEGEYVRHWLPELARMPAEWIHHPWDAPLNVLKAAGVELGMNYPNPIIDVDVARDR 477 Query: 470 TLNQYYAAKKQ 480 + +++ Sbjct: 478 LMQAIIIMREK 488 >gi|289433865|ref|YP_003463737.1| hypothetical protein lse_0498 [Listeria seeligeri serovar 1/2b str. SLCC3954] gi|289170109|emb|CBH26649.1| phrB [Listeria seeligeri serovar 1/2b str. SLCC3954] Length = 471 Score = 391 bits (1005), Expect = e-106, Method: Composition-based stats. Identities = 166/479 (34%), Positives = 246/479 (51%), Gaps = 25/479 (5%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 ++W R DLR+ DNKALY AC + D ++ +F PEQ+ + ++S+ Sbjct: 2 TSVMWFRRDLRLNDNKALYQACRDKDDLIL-LFQVNPEQFIN---GSPSHQAFFSSVAYF 57 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRV-TKLFYNRQYEINEVRRD-KLLEKR 126 ++ + + H F + + L+ + K+++NR +RD L+ Sbjct: 58 KQKVDE-----TAHLQIMFGEPMGLLEKLKEKIPAWDKVYFNRDETGYGAKRDEAALQFF 112 Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 + + ++ D+ L + A YKV+TP+ K + + + L P Sbjct: 113 AKEEIEVFAYHDAYLHHADDVKKSATDFYKVFTPYYKKWREEIKERPLPISINPEKVNNT 172 Query: 187 PVTPSNIPRFFDYPFQAID-PMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245 + P + +F + + +GE A L F KE + Y E RD P + TS L Sbjct: 173 ILFPEDEKQFVEMTRELPPLDATKLGELAAQSHLNHFVKENLADYNEARDFPDLDKTSHL 232 Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305 S +L G +S R W ++E + +G ++ EL WR+FY + +P+ + Sbjct: 233 SRFLRTGEVSIRTVWQAVQEA------EHTNGRATFEKELCWRDFYNMIYVSFPNQ-KNE 285 Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365 IEW + Q W+QG TGFP++DAAMRQL GWMHNRLRMITASFL KDL Sbjct: 286 AIQANYRFIEWENNRTNFQKWQQGATGFPLVDAAMRQLKETGWMHNRLRMITASFLTKDL 345 Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425 L+DWR GE+YF L+D D ASN GGWQWAASTG D+VPYFRIFNPT Q ++FDP G FI Sbjct: 346 LIDWRWGEKYFQQMLIDYDPASNIGGWQWAASTGTDAVPYFRIFNPTTQSEKFDPSGNFI 405 Query: 426 RHWLPELNNVPTQYIHAPHSWLDKND------LSLNYPLPIVDHKKACHHTLNQYYAAK 478 R ++ EL +P ++IH P ++ + +YP PIVDHK+ + +Y +K Sbjct: 406 RKYVQELAGLPDKFIHQPEKMTNQEQEKFHLIIGEDYPFPIVDHKERRKLAIARYEFSK 464 >gi|118594490|ref|ZP_01551837.1| deoxyribodipyrimidine photo-lyase [Methylophilales bacterium HTCC2181] gi|118440268|gb|EAV46895.1| deoxyribodipyrimidine photo-lyase [Methylophilales bacterium HTCC2181] Length = 465 Score = 391 bits (1005), Expect = e-106, Method: Composition-based stats. Identities = 167/477 (35%), Positives = 246/477 (51%), Gaps = 25/477 (5%) Query: 12 VWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGIS-ARQSHFIYASLLQVQK 70 +W R DLR+ DN AL+ A SD V VFI ++ FI+ +L +++ Sbjct: 1 MWFRRDLRLHDNHALHHALSQSD-NVYCVFIFDKNILNDLKSKEDQRIEFIWEALSEMKA 59 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130 SL+ D I + + LF+N+ YE +RD + + +Q Sbjct: 60 SLNSLSSDITVIHG----DPIHAIPLLLKKYDCEALFFNKDYESYANKRDMRIMEHIQQS 115 Query: 131 -VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSL-PVPAIRLTGPV 188 F D+VL IL+ A + Y V++P++ + L Q + R + Sbjct: 116 SADAYQFKDTVLFEEKEILSQADKPYTVFSPYKNNHLAKLYQKGITQYDCENNKRSFAKI 175 Query: 189 TPSNIPRFFDYPFQAIDP---MFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245 + F + P G +L F ++++ Y +RD P +G S L Sbjct: 176 KIEKLLSLDSLGFTKTNLSKLAIPTGSSGGRSLLLDF-EKRIDQYKLKRDYPGKKGVSYL 234 Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305 S + G +S R+ + + + K G+ WLNELIWR+FY +++ +P + GK Sbjct: 235 SVHNRFGTISIRE-------QALIAINKQSEGSLVWLNELIWRDFYFQILSNFPHINDGK 287 Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365 F P ++ + + +AWK G TGFPIIDAAM QLN G+MHNRLRMI ASFLVKDL Sbjct: 288 SFKPQFNQLRFENNVTFFEAWKNGRTGFPIIDAAMHQLNKTGFMHNRLRMIVASFLVKDL 347 Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425 L+DWR GE YF +L+D D ++NNGGWQWAASTG D+ P+FRIFNP +Q ++FDP+G FI Sbjct: 348 LIDWRWGESYFAEKLIDFDFSANNGGWQWAASTGCDAQPWFRIFNPLLQSEKFDPEGLFI 407 Query: 426 RHWLPELNNVPTQYIHAPHSWLDKN------DLSLNYPLPIVDHKKACHHTLNQYYA 476 + +LP+L + + IH PH + +K+ L +YP PI+DH L+ Y A Sbjct: 408 KKYLPQLTPLSAKEIHRPHFFYEKDPDTFKVKLGEDYPFPIIDHAIQRQKALSMYQA 464 >gi|110668379|ref|YP_658190.1| deoxyribodipyrimidine photolyase [Haloquadratum walsbyi DSM 16790] gi|109626126|emb|CAJ52578.1| deoxyribodipyrimidine photolyase [Haloquadratum walsbyi DSM 16790] Length = 478 Score = 391 bits (1005), Expect = e-106, Method: Composition-based stats. Identities = 161/486 (33%), Positives = 232/486 (47%), Gaps = 21/486 (4%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAK-------VIAVFIATPEQWRQHGISARQSHFI 61 + L W R+DLR DN+ L A +I VFI + ++ Sbjct: 1 MQLYWHRSDLRGVDNRGLAEAASAVSPDLLPDADGIIPVFIFDDNALE--HDGNARVQYM 58 Query: 62 YASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDK 121 S+ +++ + + D + L V ++ +NR+Y RD+ Sbjct: 59 LESIAELRSWYRDRDSDLLIARG----DPVSILPELASTHDVDRVVWNREYSGFAQSRDQ 114 Query: 122 LLEKRL-QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVP 180 + L +H + S DS+ PGSI + + Y VYT F K A + + P Sbjct: 115 QVADALTEHDIAHCSVRDSIFFEPGSITTNKGEPYSVYTYFWKKWRDREKNAPIDA-PDA 173 Query: 181 AIRLTGPVTPSNIPRFFDYPFQ-AIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAI 239 + + ++P F+ + P G A + L FC + +Y Y + RD P+ Sbjct: 174 DMFVPDEGIGDSLPTIDSLGFEEPTADIQPAGTNAARNRLSDFCADGIYRYDDDRDYPSR 233 Query: 240 QGTSQLSPYLSIGVLSPRQCWNR--LKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAF 297 S+LS LS G + R E + + ++L WREFY H++ F Sbjct: 234 DAVSRLSADLSFGTIGVRDVHAATVAAAEVDGITDAEAESVEEFQSQLAWREFYTHVLYF 293 Query: 298 YPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMIT 357 P V + + I+W D LQAWK G TG+PI+DA MRQL + +MHNRLRMI Sbjct: 294 NPEVVTEN-YKSYENGIQWRDDPAALQAWKDGETGYPIVDAGMRQLKSEAYMHNRLRMIV 352 Query: 358 ASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKR 417 ASFL KDLL+DWR G +F L D ++A+NNGGWQWAASTG D+ PYFRIFNP QG+R Sbjct: 353 ASFLTKDLLIDWREGYGHFRQYLADHNIANNNGGWQWAASTGTDAQPYFRIFNPMTQGER 412 Query: 418 FDPQGTFIRHWLPELNNVPTQYIHAPH--SWLDKNDLSLNYPLPIVDHKKACHHTLNQYY 475 +DP +I+ ++PEL VP IH H S ++ L +YP PIVDH K L + Sbjct: 413 YDPDAEYIKQYVPELREVPADTIHEWHELSPTERARLDTDYPAPIVDHSKQREKALEMFE 472 Query: 476 AAKKQS 481 A+ + Sbjct: 473 TARGDA 478 >gi|315301776|ref|ZP_07872823.1| deoxyribodipyrimidine photo-lyase [Listeria ivanovii FSL F6-596] gi|313629850|gb|EFR97936.1| deoxyribodipyrimidine photo-lyase [Listeria ivanovii FSL F6-596] Length = 471 Score = 391 bits (1005), Expect = e-106, Method: Composition-based stats. Identities = 170/480 (35%), Positives = 255/480 (53%), Gaps = 27/480 (5%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 ++W R DLR++DN ALY AC ++D ++I +F PEQ+ S ++S+ Sbjct: 2 TSVMWFRRDLRLSDNTALYQACKDND-ELILLFQVNPEQFITKSPS---HQAFFSSVAYF 57 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQ-RVTKLFYNRQYEINEVRRDK-LLEKR 126 ++ + + H F + I L+ + K+++NR +RD+ L Sbjct: 58 KQQVDK-----IAHLQIMFGEPINLLEKLKEKVPSWDKVYFNRDETGYGAKRDETALRFF 112 Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 Q + +FDD+ L ++ + YK++TP+ K + + + ++ PA Sbjct: 113 AQAGMTVFAFDDAYLHHADAVKKSTSEFYKIFTPYYKKWREEIKEFPIQVTVNPAKIQKA 172 Query: 187 PVTPSNIPRFFDYPFQAIDPMFP--IGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244 + P + +F QA+ + +GE A + L F KE + Y E RD P + TS Sbjct: 173 ILFPEDEEQFVQM-AQALPMLAENMLGETVANNQLNHFVKENLAQYKEVRDFPDLDKTSH 231 Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304 LS +L G LS R W +++ +P G ++ EL WR+FY + +P+ Sbjct: 232 LSRFLRTGELSIRTVWQAVQKA------EPTDGRTTFEKELCWRDFYNMIYVSFPNQ-KN 284 Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364 + IEW + + Q W+QG TG+P++DAAMRQL GWMHNRLRMITASFL KD Sbjct: 285 EAIQTNYRFIEWENNRNYFQKWQQGATGYPLVDAAMRQLKETGWMHNRLRMITASFLTKD 344 Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424 LL+DWR GE+YF L+D D ASN GGWQWAASTG D+VPYFRIFNPT Q ++FD G F Sbjct: 345 LLIDWRWGEKYFQQMLVDYDPASNIGGWQWAASTGTDAVPYFRIFNPTTQSEKFDSLGNF 404 Query: 425 IRHWLPELNNVPTQYIHAPHSWLDKND------LSLNYPLPIVDHKKACHHTLNQYYAAK 478 IR ++ EL N+P ++IH P K L +YP PI++H++ + +Y +K Sbjct: 405 IRKYVQELANLPDKFIHQPEKMTAKEQTEFKVILGEDYPFPIINHQERRKEAIARYEFSK 464 >gi|94988861|ref|YP_596962.1| deoxyribodipyrimidine photolyase [Streptococcus pyogenes MGAS9429] gi|94992751|ref|YP_600850.1| deoxyribodipyrimidine photolyase [Streptococcus pyogenes MGAS2096] gi|94542369|gb|ABF32418.1| deoxyribodipyrimidine photolyase [Streptococcus pyogenes MGAS9429] gi|94546259|gb|ABF36306.1| Deoxyribodipyrimidine photolyase [Streptococcus pyogenes MGAS2096] Length = 480 Score = 391 bits (1005), Expect = e-106, Method: Composition-based stats. Identities = 173/487 (35%), Positives = 249/487 (51%), Gaps = 22/487 (4%) Query: 2 KATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFI 61 + ++ V ++W R DLRI D KAL A S + + VF EQ S QS FI Sbjct: 6 RRKGSVMVSVMWFRRDLRIDDQKALAHAIA-SQSPTLCVFQFNKEQLNLLH-SRNQSSFI 63 Query: 62 YASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDK 121 S+L +K L +GI + L T +++N RD+ Sbjct: 64 T-SVLAFRKLLKCEGIDLYLMYGDLMTCFEQLLTQLK---DWTDVYFNYDESGYGRLRDQ 119 Query: 122 LLEKRLQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVP 180 + + I ++ D L I+N + Q YKV+TP+ + + ++ + + Sbjct: 120 KAAQFFKKNGIAVHTYQDHYLHGSQEIINQSGQPYKVFTPYYRIWQNYPKETPIK-VELS 178 Query: 181 AIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ 240 R TP ++ R + F+ A L +F ++++ Y RD PA Sbjct: 179 QGRWLNLETPDDVLRTVE-SFKDEKYQDVATFDEASKQLNRFIQDQLAAYHANRDFPAQL 237 Query: 241 GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPS 300 GTS+LSP+L IG + R ++ +++ G ++L EL WR+FY + YP Sbjct: 238 GTSRLSPFLRIGAIGIRTVYHAVRQA------PNSLGQATFLKELAWRDFYNMVYVAYPD 291 Query: 301 VCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASF 360 +P +IEW + Q WK+G TG+PI+DAAM QL GWMHNRLRMI ASF Sbjct: 292 Q-KTQPIQKAFSQIEWVNNPDWFQLWKEGKTGYPIVDAAMLQLQKTGWMHNRLRMIVASF 350 Query: 361 LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDP 420 L KDLL DWR+GE++F QL+D D ASN GGWQWAASTG D+VPYFR+FNP Q KRFDP Sbjct: 351 LTKDLLCDWRLGEQHFQQQLIDYDAASNIGGWQWAASTGTDAVPYFRVFNPVTQSKRFDP 410 Query: 421 QGTFIRHWLPELNNVPTQYIHAPHSWLD------KNDLSLNYPLPIVDHKKACHHTLNQY 474 +G FI+ +LP+L +VP +Y+H P + +YP PIVDH K + +Y Sbjct: 411 KGEFIKAYLPQLEHVPEKYLHEPWKMPKYLQESVSCIIGTDYPQPIVDHAKQREQAIAKY 470 Query: 475 YAAKKQS 481 AK+++ Sbjct: 471 EWAKEKA 477 >gi|294654321|ref|XP_456362.2| DEHA2A00594p [Debaryomyces hansenii CBS767] gi|199428788|emb|CAG84307.2| DEHA2A00594p [Debaryomyces hansenii] Length = 555 Score = 391 bits (1004), Expect = e-106, Method: Composition-based stats. Identities = 166/485 (34%), Positives = 241/485 (49%), Gaps = 20/485 (4%) Query: 14 LRNDLRITDNKALYAACHNS---DAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 D R DNK L A + +I I E++ H +S + ++ SL ++K Sbjct: 70 FLRDFRTIDNKGLSIASELATTTKTPLITFHIFCLEEFDAHSVSPFKLEYMLGSLDVLKK 129 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRR-DKLLEKRLQH 129 L + I Q D + + Q + +F N +YE++E+R KL+ L Sbjct: 130 DLREMNIPLVSLQVEKRKDVPTKIAEFLEQNNTSHVFCNMEYEVDELRLLSKLVCFLLDK 189 Query: 130 RVICKSFDDSVLLPPGSILNHA-LQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188 + DS ++ PG + + Y V+TP+ KA L D + P Sbjct: 190 HISFNPVHDSCIVKPGELKTKSKGTQYAVFTPWYKAWCNYLKIEDAPFMEYPRPHANESF 249 Query: 189 TPSNIPRFFDYPF------------QAIDPMFPIGEQNALHILRKFCK-EKVYYYVEQRD 235 + N + P + D + GE A L F + +K Y E R+ Sbjct: 250 SDPNKLFDSEIPQVPESKRLTHDQQKEFDTCWKCGEHEAWSALSVFLESDKFKKYDESRN 309 Query: 236 IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLM 295 + + S++S +S G++S R + E I W+ ++ WR+FYRH++ Sbjct: 310 EISEESVSRMSCPISSGIISTRSIIRYILENKFVKKIDSGEQGTGWIRQIAWRDFYRHIL 369 Query: 296 AFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRM 355 +P VCM KPF+ + + W +S W QG TGFPI+DAAMRQLN G++HNR RM Sbjct: 370 CNWPYVCMFKPFLLEYDDLNWEYNSDHFYKWCQGKTGFPIVDAAMRQLNQTGYLHNRCRM 429 Query: 356 ITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQG 415 I ASFL K LL+DW+ GE YFM L+DGD ASNNGGW +++STG D PYFRIFNP +Q Sbjct: 430 IVASFLSKHLLIDWKYGEYYFMEHLIDGDFASNNGGWGFSSSTGVDPQPYFRIFNPWLQS 489 Query: 416 KRFDPQGTFIRHWLPELNNV-PTQYIHAPHSWLDKNDLSLN-YPLPIVDHKKACHHTLNQ 473 +RFD +GT+IR W+PEL ++ + IH P+ + N YP PIVDHK LN+ Sbjct: 490 ERFDKKGTYIRTWVPELKDIQDEKGIHNPYEKGYGHIAEKNGYPKPIVDHKYCRERALNR 549 Query: 474 YYAAK 478 + AK Sbjct: 550 FKDAK 554 >gi|224112573|ref|XP_002332746.1| predicted protein [Populus trichocarpa] gi|222833074|gb|EEE71551.1| predicted protein [Populus trichocarpa] Length = 646 Score = 391 bits (1004), Expect = e-106, Method: Composition-based stats. Identities = 138/484 (28%), Positives = 227/484 (46%), Gaps = 24/484 (4%) Query: 8 SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67 S +VW R DLRI DN AL AA D V VFI P++ Q ++ SL Sbjct: 4 SKTIVWFRRDLRIEDNPALAAAAR--DGCVFPVFIWCPKEEGQFYPGRVSRWWLKQSLAH 61 Query: 68 VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127 + +SL G + + ++ L T++ +N Y+ + RD ++++L Sbjct: 62 LGQSLKSLGAELVLIKTHS---TVAALLDCIETIGATRVVFNHLYDPVSLVRDHNIKEKL 118 Query: 128 QHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 I +S++ +L P I + + + + + ++ P + G Sbjct: 119 VELGISVQSYNGDLLYEPWEIYDERGHAFTTFEAYWDRCLHMQMEPVSHLPPWRLVPAAG 178 Query: 187 PVTPSNIPRF--FDYPFQAIDPM----FPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ 240 V ++ D ++ + + + G NA L +F ++ + YVE R Sbjct: 179 TVMKCSVEELGLEDEAEKSSNSLLGRGWSPGWSNADKALTEFAEQHLIDYVESRLKVGT- 237 Query: 241 GTSQLSPYLSIGVLSPRQCWNRLKEEF----VDLLIKPKSGAFSWLNELIWREFYRHLMA 296 TS LSPYL G LS R+ + ++ + + + K +L + RE+ R+L Sbjct: 238 STSLLSPYLHFGELSVRKVFQCVQLKQLLWAKEENLMGKESVTLFLRSIGLREYSRYLCF 297 Query: 297 FYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMI 356 +P + + + WN + +AW+QG TG+P++DA MR+L GW+HN++R+I Sbjct: 298 NFP-FTHERSLLRNLKYFPWNDNQVHFKAWRQGRTGYPLVDAGMRELWATGWIHNKIRVI 356 Query: 357 TASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGK 416 +SF VK LL+ WR G +YF LLD DL S+ GWQ+ + + D+ R+ NP IQG Sbjct: 357 VSSFAVKVLLLPWRWGMKYFWDTLLDADLESDILGWQYISGSLPDAHELERLDNPEIQGS 416 Query: 417 RFDPQGTFIRHWLPELNNVPTQYIHAPHSW------LDKNDLSLNYPLPIVDHKKACHHT 470 +FDP+G ++R WLPEL +P ++IH P +L +NYP PI+D A Sbjct: 417 KFDPEGEYVRRWLPELARMPAEWIHHPWDASIAVLKAAGVELGINYPKPIIDIDLARERL 476 Query: 471 LNQY 474 + Sbjct: 477 MEAI 480 >gi|302383034|ref|YP_003818857.1| deoxyribodipyrimidine photo-lyase [Brevundimonas subvibrioides ATCC 15264] gi|302193662|gb|ADL01234.1| Deoxyribodipyrimidine photo-lyase [Brevundimonas subvibrioides ATCC 15264] Length = 490 Score = 391 bits (1004), Expect = e-106, Method: Composition-based stats. Identities = 168/471 (35%), Positives = 236/471 (50%), Gaps = 17/471 (3%) Query: 2 KATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFI 61 KA + ++W R DLR+ DN AL A H + V+ V+I E A ++ Sbjct: 4 KAQDGPAPVILWFRRDLRLADNPALNKA-HATGRPVVPVYIHD-EGTAVRPAGAASLWWL 61 Query: 62 YASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDK 121 SL + SL+++G + DS L Q +F NR +E RD Sbjct: 62 DKSLRALAGSLAERGATLILRRG----DSETELRRLIDQTGADTVFLNRLFEPEAWTRDA 117 Query: 122 LLEKRLQ-HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVP 180 + L+ V C+ + S+L PGS+LN + YKV+TPF KAL + P Sbjct: 118 DIAHGLKTDGVECRGSNGSLLALPGSLLNGSGGPYKVFTPFMKALRAQAEPPAHTTGPRQ 177 Query: 181 AIRLTGPVTPS--NIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPA 238 G + P + + GE A L +F + Y RD PA Sbjct: 178 LGAAPGLESDDLDAWGLHPTRPDWSKGFDWTPGEDGATAALHRFVSGGLADYSNGRDRPA 237 Query: 239 IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFY 298 TS+LSP+L G +SP + W ++ D A ++ ELIWR+F HL+ + Sbjct: 238 EPATSRLSPHLHFGEISPWRAWIAARDA-ADGGKVTSGEADKFIAELIWRDFSAHLLHHF 296 Query: 299 PSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITA 358 P++ K F P + + W D AW +G TG+PI+DA MR+L G MHNR+RMI A Sbjct: 297 PTLP-DKAFRPEYDAMPWRDDEPGFLAWTRGMTGYPIVDAGMRELWATGVMHNRVRMIVA 355 Query: 359 SFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRF 418 SFL+KDLL+DWR GE +F L+D DLASN+ WQW A +G D+ PYFRIFNP QG++F Sbjct: 356 SFLIKDLLIDWRRGEAWFWDTLVDADLASNSQNWQWVAGSGADASPYFRIFNPVTQGQKF 415 Query: 419 DPQGTFIRHWLPELNNVPTQYIHAPHSWLDK------NDLSLNYPLPIVDH 463 D + +++ W+PEL VP ++IHAP + + L YP PIVDH Sbjct: 416 DAEARYVKRWIPELAPVPARWIHAPWNAPPEILRDCGIRLGTTYPRPIVDH 466 >gi|19746457|ref|NP_607593.1| deoxyribodipyrimidine photolyase [Streptococcus pyogenes MGAS8232] gi|306827047|ref|ZP_07460345.1| deoxyribodipyrimidine photolyase [Streptococcus pyogenes ATCC 10782] gi|19748660|gb|AAL98092.1| putative deoxyribodipyrimidine photolyase [Streptococcus pyogenes MGAS8232] gi|304430793|gb|EFM33804.1| deoxyribodipyrimidine photolyase [Streptococcus pyogenes ATCC 10782] Length = 469 Score = 390 bits (1003), Expect = e-106, Method: Composition-based stats. Identities = 175/480 (36%), Positives = 246/480 (51%), Gaps = 22/480 (4%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 V ++W R DLRI D KAL S + + VF EQ S QS FI S+L Sbjct: 2 VSVMWFRRDLRIDDQKALAHVIA-SQSPTLCVFQFNKEQLNLLH-SRNQSSFIT-SVLAF 58 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128 +K L +GI + L T +++N RD+ + + Sbjct: 59 RKLLKCEGIDLYLMYGDLMTCFEQLLTQLK---DWTDVYFNYDESGYGRLRDQKAAQFFK 115 Query: 129 HRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187 I ++ D L I+N + Q YKV+TP+ + + ++ + + R Sbjct: 116 KNGIAVHTYQDHYLHGSQEIINQSGQPYKVFTPYYRIWQNYPKETPIK-VELSQGRWLNL 174 Query: 188 VTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSP 247 TP ++ R + F+ A L +F ++++ Y RD PA GTS+LSP Sbjct: 175 ETPDDVLRTVE-SFKDEKYQDVATFDEASKQLNRFIQDQLAAYHANRDFPAQLGTSRLSP 233 Query: 248 YLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPF 307 +L IG + R ++ +++ G ++L EL WR+FY + YP +P Sbjct: 234 FLRIGAIGIRTVYHAVRQA------PNSLGQATFLKELAWRDFYNMVYVAYPDQ-KTQPI 286 Query: 308 IPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLV 367 +IEW + Q WK+G TG+PI+DAAM QL GWMHNRLRMI ASFL KDLL Sbjct: 287 QKAFSQIEWVNNPDWFQLWKEGKTGYPIVDAAMLQLQKTGWMHNRLRMIVASFLTKDLLC 346 Query: 368 DWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRH 427 DWR+GE+YF QL+D D ASN GGWQWAASTG D+VPYFRIFNP QGKRFDP+G FI+ Sbjct: 347 DWRLGEQYFQQQLIDYDAASNIGGWQWAASTGTDAVPYFRIFNPVTQGKRFDPKGEFIKA 406 Query: 428 WLPELNNVPTQYIHAPHSWLD------KNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481 +LP+L +VP +Y+H P + +YP PIVDH K + +Y AK+++ Sbjct: 407 YLPQLEHVPEKYLHEPWKMPKNLQESVSCIIGTDYPQPIVDHAKQREQAIAKYEWAKEKA 466 >gi|94994739|ref|YP_602837.1| deoxyribodipyrimidine photolyase [Streptococcus pyogenes MGAS10750] gi|94548247|gb|ABF38293.1| Deoxyribodipyrimidine photolyase [Streptococcus pyogenes MGAS10750] Length = 477 Score = 390 bits (1003), Expect = e-106, Method: Composition-based stats. Identities = 175/487 (35%), Positives = 249/487 (51%), Gaps = 22/487 (4%) Query: 2 KATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFI 61 + ++ V ++W R DLRI D KAL S + + VF EQ S QS FI Sbjct: 3 RRKGSVMVSVMWFRRDLRIDDQKALAHVIA-SQSPTLCVFQFNKEQLNLLH-SRNQSSFI 60 Query: 62 YASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDK 121 S+L +K L +GI + L T +++N RD+ Sbjct: 61 T-SVLAFRKLLKCEGIDLYLMYGDLMTCFEQLLTQLK---DWTDVYFNYDESGYGRLRDQ 116 Query: 122 LLEKRLQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVP 180 + + I ++ D L I+N + Q YKV+TP+ + + ++ + + Sbjct: 117 KAAQFFKKNGIAVHTYQDHYLHGSQEIINQSGQPYKVFTPYYRIWQNYPKETPIK-VELS 175 Query: 181 AIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ 240 R TP ++ R + F+ A L +F ++++ Y RD PA Sbjct: 176 QGRWLNLETPDDVLRTVE-SFKDEKYQDVATFDEASKQLNRFIQDQLAAYHANRDFPAQL 234 Query: 241 GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPS 300 GTS+LSP+L IG + R ++ +++ G ++L EL WR+FY + YP Sbjct: 235 GTSRLSPFLRIGAIGIRTVYHAVRQA------PNSLGQATFLKELAWRDFYNMVYVAYPD 288 Query: 301 VCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASF 360 +P +IEW + Q WK+G TG+PI+DAAM QL GWMHNRLRMI ASF Sbjct: 289 Q-KTQPIQKAFSQIEWVNNPDWFQLWKEGKTGYPIVDAAMLQLQKTGWMHNRLRMIVASF 347 Query: 361 LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDP 420 L KDLL DWR+GE+YF QL+D D ASN GGWQWAASTG D+VPYFRIFNP QGKRFDP Sbjct: 348 LTKDLLCDWRLGEQYFQQQLIDYDAASNIGGWQWAASTGTDAVPYFRIFNPVTQGKRFDP 407 Query: 421 QGTFIRHWLPELNNVPTQYIHAPHSWLD------KNDLSLNYPLPIVDHKKACHHTLNQY 474 +G FI+ +LP+L +VP +Y+H P + +YP PIVDH K + +Y Sbjct: 408 KGEFIKAYLPQLEHVPEKYLHEPWKMPKNLQESVSCIIGTDYPQPIVDHAKQREQAIAKY 467 Query: 475 YAAKKQS 481 AK+++ Sbjct: 468 EWAKEKA 474 >gi|302498692|ref|XP_003011343.1| hypothetical protein ARB_02402 [Arthroderma benhamiae CBS 112371] gi|291174893|gb|EFE30703.1| hypothetical protein ARB_02402 [Arthroderma benhamiae CBS 112371] Length = 565 Score = 390 bits (1003), Expect = e-106, Method: Composition-based stats. Identities = 170/486 (34%), Positives = 237/486 (48%), Gaps = 43/486 (8%) Query: 11 LVWLRNDLRITDNKALYAA---CHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67 + W + DLR+ DN++L+ A + + +I ++I +PE H S + I +L Sbjct: 100 VHWFKQDLRLQDNRSLHRAYNFARDHNIPLICLYIFSPEDLTAHLCSPPRVDLILRTLAT 159 Query: 68 VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127 ++ LS+K I + C + LF N +YE++E+RR+ L + Sbjct: 160 LKSGLSKKDIPLYMESIKRRKRIPSRIVELCKTWGASHLFANIEYEVDELRREAKLTRLC 219 Query: 128 Q-HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQAD--LRSLPVPAIRL 184 +I S DD+ ++ PG + + Y VYTP+ ++ + L Q L + PA+ Sbjct: 220 ATQGIIFDSEDDACVVAPGELSTQQGKQYAVYTPWYRSWVAYLKQHPENLELVDAPAVNA 279 Query: 185 TGP------------VTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVE 232 N + + + M+P GEQ A LR+F EK Y Sbjct: 280 GDARKHFKDLFDSAVPIAPNQMKLSEAEQERFKKMYPEGEQEATRRLREFLSEKGKQYHS 339 Query: 233 QRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYR 292 +RD + Q TS LSPY S G LS R + L+I S Sbjct: 340 KRDFMSSQFTSVLSPYFSCGALSARTAPFIEAMKLCGLVITDDSS--------------- 384 Query: 293 HLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNR 352 M K F P +EW DS AW +G TGFPI+DAAMRQL WMHNR Sbjct: 385 ---------SMNKCFKPEFTDLEWEYDSTQFDAWCEGKTGFPIVDAAMRQLKHCAWMHNR 435 Query: 353 LRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPT 412 RMI +SFL KDLL+DWR GE++FM L+DGD ASN+GGW + +STG D PYFRIFNP Sbjct: 436 TRMIVSSFLSKDLLIDWRRGEQFFMLHLIDGDFASNHGGWGFGSSTGVDPQPYFRIFNPL 495 Query: 413 IQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLN-YPLPIVDHKKACHHTL 471 Q +RFDP G +IRHW+PEL +V IH P+ + N YP PIV+H ++ L Sbjct: 496 RQSERFDPDGDYIRHWVPELRDVEGSAIHDPYGRGAEEIAEKNGYPRPIVNHTESRERAL 555 Query: 472 NQYYAA 477 +Y A Sbjct: 556 EKYKKA 561 >gi|71903837|ref|YP_280640.1| deoxyribodipyrimidine photolyase [Streptococcus pyogenes MGAS6180] gi|71802932|gb|AAX72285.1| deoxyribodipyrimidine photolyase [Streptococcus pyogenes MGAS6180] Length = 477 Score = 390 bits (1003), Expect = e-106, Method: Composition-based stats. Identities = 175/487 (35%), Positives = 249/487 (51%), Gaps = 22/487 (4%) Query: 2 KATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFI 61 + ++ V ++W R DLRI D KAL A S + + VF EQ S QS FI Sbjct: 3 RRKGSVMVSVMWFRRDLRIDDQKALAHAIA-SQSPTLCVFQFNKEQLNLLH-SRNQSSFI 60 Query: 62 YASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDK 121 S+L +K L + I + L T +++N RD+ Sbjct: 61 T-SVLAFRKLLKCESIDLYLMYGDLMTCFEQLLTQLK---DWTDVYFNYDESGYGRLRDQ 116 Query: 122 LLEKRLQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVP 180 + + I ++ D L I+N + Q YKV+TP+ + + ++ + + Sbjct: 117 KAAQFFKKNGIAVHTYQDHYLHGSQEIINQSGQPYKVFTPYYRIWQNYPKETPIK-VELS 175 Query: 181 AIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ 240 R TP ++ R + F+ A L +F ++++ Y RD PA Sbjct: 176 QGRWLNLETPDDVLRTVE-SFKDEKYQDVATFDEASKQLNRFIQDQLAAYHANRDFPAQL 234 Query: 241 GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPS 300 GTS+LSP+L IG + R ++ +++ G ++L EL WR+FY + YP Sbjct: 235 GTSRLSPFLRIGAIGIRTVYHAVRQA------PNSLGQATFLKELAWRDFYNMVYVAYPD 288 Query: 301 VCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASF 360 +P +IEW + Q WK+G TG+PI+DAAM QL GWMHNRLRMI ASF Sbjct: 289 Q-KTQPIQKAFSQIEWVNNPDWFQLWKEGKTGYPIVDAAMLQLQKTGWMHNRLRMIVASF 347 Query: 361 LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDP 420 L KDLL DWR+GE+YF QL+D D ASN GGWQWAASTG D+VPYFRIFNP QGKRFDP Sbjct: 348 LTKDLLCDWRLGEQYFQQQLIDYDAASNIGGWQWAASTGTDAVPYFRIFNPVTQGKRFDP 407 Query: 421 QGTFIRHWLPELNNVPTQYIHAPHSWLD------KNDLSLNYPLPIVDHKKACHHTLNQY 474 +G FI+ +LP+L +VP +Y+H P + +YP PIVDH K + +Y Sbjct: 408 KGEFIKAYLPQLEHVPEKYLHEPWKMPKYLQESVSCIIGTDYPQPIVDHAKQREQAIAKY 467 Query: 475 YAAKKQS 481 AK+++ Sbjct: 468 EWAKEKA 474 >gi|298490155|ref|YP_003720332.1| deoxyribodipyrimidine photo-lyase ['Nostoc azollae' 0708] gi|298232073|gb|ADI63209.1| Deoxyribodipyrimidine photo-lyase ['Nostoc azollae' 0708] Length = 479 Score = 390 bits (1003), Expect = e-106, Method: Composition-based stats. Identities = 168/478 (35%), Positives = 238/478 (49%), Gaps = 18/478 (3%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 L W R DLRI+DN L AA S +K++ VF P ++ + ++ L ++K Sbjct: 6 LFWHRRDLRISDNTGLIAAREQS-SKIVGVFCLDPCILNSDDVAPARIKYMMGCLQSLEK 64 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130 +Q G +D+ I + + +V +F+N E RD + L+ + Sbjct: 65 QYTQAGSQLVIL----YDNPIAVIPALAEALKVKAVFWNWDVEPYAQIRDNDVICVLREK 120 Query: 131 VI--CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPA------I 182 I D +L P IL+ + Y VYTPF K + +L Sbjct: 121 GIQTLNQNWDQLLHSPDEILSGSKTPYTVYTPFWKNWSSKPKANPVATLKNSEGLTAAEQ 180 Query: 183 RLTGPVTPSNIPRFFDYPF-QAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQG 241 + N+P D F + + GE A L F + Y EQR+ P + G Sbjct: 181 EIAKQSGAINLPSAQDLGFIWDGELIIEPGEAVAKARLETFTTSAINEYQEQRNFPTVHG 240 Query: 242 TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKP-KSGAFSWLNELIWREFYRHLMAFYPS 300 TSQLS L GV+ R W KE + + +W E WREFY+H M +P+ Sbjct: 241 TSQLSAALKFGVIGIRTIWQATKELLETSNSEEVTASIRTWQQEFAWREFYQHAMYHFPA 300 Query: 301 VCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASF 360 + G + +K W + QAW +G TG+PI+DAAMRQLN IGWMHNR RMI ASF Sbjct: 301 LANG-AYRDIFKKFPWQNNQAHFQAWCEGKTGYPIVDAAMRQLNEIGWMHNRCRMIVASF 359 Query: 361 LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDP 420 L KDL+++ + GE+YFM +L+DGDL++NNGGWQW+AS+G DS P RIFNP Q ++FD Sbjct: 360 LTKDLIINPQWGEKYFMQKLIDGDLSANNGGWQWSASSGMDSKP-LRIFNPASQAQKFDI 418 Query: 421 QGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478 G +IR W+ EL +V T+Y+ + + ++ YP PIVDHKK Y K Sbjct: 419 DGEYIRQWVRELKSVDTEYLVS-GNITPLERRAVGYPTPIVDHKKQQGLFKQLYQEQK 475 >gi|294055436|ref|YP_003549094.1| Deoxyribodipyrimidine photo-lyase [Coraliomargarita akajimensis DSM 45221] gi|293614769|gb|ADE54924.1| Deoxyribodipyrimidine photo-lyase [Coraliomargarita akajimensis DSM 45221] Length = 476 Score = 390 bits (1002), Expect = e-106, Method: Composition-based stats. Identities = 170/490 (34%), Positives = 258/490 (52%), Gaps = 33/490 (6%) Query: 6 AMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASL 65 + + +VW RNDLR +DN AL AA +A ++ VFI + + A +++ SL Sbjct: 2 SAPLAIVWFRNDLRFSDNAALAAAIAEGNA-ILPVFIRDQVSEGRWPMGAASKWWLHESL 60 Query: 66 LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125 + +S + G + DS+ L + + T +++NR+YE + +D +++ Sbjct: 61 KRFAQSWNSCGGDLIFRNG----DSLAELRAIAAESGATSIYWNRRYEGHLREQDAQIKR 116 Query: 126 RL-QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRS-------- 176 L + + KS++ S+L P +I N + YKVYTP+ KA+ V + Sbjct: 117 ELFEDGLEVKSYNSSLLNEPHTIGNKEGRPYKVYTPYFKAVKDRPVARPVVPDLTAMAFP 176 Query: 177 --LPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQR 234 LP + PSN ++ + + E+ A + +F +V Y R Sbjct: 177 DELPQSLALDALDLLPSNQW------YRKFESKWEPSEEGAKQQVDEFLSLRVERYDTDR 230 Query: 235 DIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHL 294 D P + GTS LSPYL G + PRQ + L E DL + G F +L E+ WREF ++ Sbjct: 231 DRPDLDGTSALSPYLHFGQIGPRQLVHEL-ELRADL---EEQGPFIFLKEIYWREFAYNV 286 Query: 295 MAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLR 354 + +P P P E W +++ LL WK+G TG+PI+DA MRQL GWMHNR+R Sbjct: 287 LYHFPRTAES-PLQPQYESFPWEQNADLLSLWKRGKTGYPIVDAGMRQLWQTGWMHNRVR 345 Query: 355 MITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQ 414 MI +S LVK LL DW+ G +F L+D DLASN GWQW+ G D+ PYFRIFNP IQ Sbjct: 346 MIVSSLLVKHLLQDWKEGARWFWDTLVDADLASNTLGWQWSGGCGADAAPYFRIFNPMIQ 405 Query: 415 GKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKN------DLSLNYPLPIVDHKKACH 468 GK+FDP+ ++R ++PEL+ +P +YIH P D+ +L ++YP P+V+H Sbjct: 406 GKKFDPEALYVRRFVPELSRLPNKYIHEPWEAPDEVLAEAGIELGVDYPYPVVEHAVGRQ 465 Query: 469 HTLNQYYAAK 478 L+ Y + + Sbjct: 466 RALSAYESFR 475 >gi|23954324|emb|CAC82538.1| Cryptochrome 2 [Oryza sativa Indica Group] Length = 651 Score = 390 bits (1002), Expect = e-106, Method: Composition-based stats. Identities = 136/480 (28%), Positives = 218/480 (45%), Gaps = 28/480 (5%) Query: 10 HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69 +VW R DLRI DN AL AA D V+ VFI P Q ++ SL + Sbjct: 7 TVVWFRRDLRIDDNPALAAAAR--DGVVLPVFIWCPADEGQFYPGRCSRWWLKQSLPHLS 64 Query: 70 KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH 129 +SL G + + ++E L T+L YN Y+ + RD ++K L Sbjct: 65 QSLESLGCPLVLIRAES---TLEALLRCIDSVGATRLVYNHLYDPVSLVRDDKIKKELSA 121 Query: 130 RVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188 I +SF+ +L P I + + + + + + ++ + P + G + Sbjct: 122 LGISIQSFNGDLLYEPWEIYDDSGLAFTTFNMYWEKCMELPIDISPSLAPWKLVPAPG-L 180 Query: 189 TPSNIPRFFDYPFQA----------IDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPA 238 D ++ + + G +NA +L +F + Y + Sbjct: 181 ESVRSCSVDDLGLESSKDEESSNALLRRAWSPGWRNAEKMLEEFVSHGLLEYSKHGMKVE 240 Query: 239 IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFS----WLNELIWREFYRHL 294 TS LSPYL G +S R+ + ++ + + + S A ++ + RE+ R+L Sbjct: 241 GATTSLLSPYLHFGEVSVRKVYQLVRMQQIKWENEGTSEAEESIHFFMRSIGLREYSRYL 300 Query: 295 MAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLR 354 +P K + + W D ++W+QG TG+P++DA MR+L GW HNR+R Sbjct: 301 CFNFP-FTHEKSLLGNLKHYPWKVDEERFKSWRQGMTGYPLVDAGMRELWATGWTHNRIR 359 Query: 355 MITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQ 414 +I +SF VK LL+ W G +YF LLD DL S+ GWQ+ + + D R+ NP +Q Sbjct: 360 VIISSFAVKFLLIPWTWGMKYFWDVLLDADLESDILGWQYISGSLPDGHELSRLDNPEVQ 419 Query: 415 GKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWL------DKNDLSLNYPLPIVDHKKACH 468 G+++DP G ++R W+PEL +PT++IH P +L NYP PIVD A Sbjct: 420 GQKYDPDGVYVRTWIPELARMPTEWIHHPWDAPSCILEVAGVELGFNYPKPIVDLHIARE 479 >gi|313126193|ref|YP_004036463.1| deoxyribodipyrimidine photo-lyase type i [Halogeometricum borinquense DSM 11551] gi|312292558|gb|ADQ67018.1| deoxyribodipyrimidine photo-lyase type I [Halogeometricum borinquense DSM 11551] Length = 469 Score = 390 bits (1002), Expect = e-106, Method: Composition-based stats. Identities = 155/475 (32%), Positives = 236/475 (49%), Gaps = 17/475 (3%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 +HL W R DLR++DN L A D V+ VF+ + A + F+ +L ++ Sbjct: 1 MHLHWHRRDLRVSDNHGLVTAADAGD--VVPVFVFDDDVLA--HAGAARVRFMLDALARL 56 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128 +++ ++ + D E L + + +N+ Y RD+ + + L Sbjct: 57 RETYRERDSDLVVVRG----DPTEELPRLAAEYDADGVVWNKDYSRLARTRDEAVRRALD 112 Query: 129 HRVICK-SFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187 + + D++ PGSI +A Y VYT F K P Sbjct: 113 EAGVAHDAVHDAIHHEPGSITTNAGDPYSVYTYFWKKWRNRNKADPFSP---PEADSLAD 169 Query: 188 VTPSNIPRFFDYPFQAIDPMFP-IGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246 V+ +++P + F D G + A L FC++ +Y Y RD P TS+LS Sbjct: 170 VSGADLPTIEELGFSDPDATIQEAGTEAARERLAAFCEDAIYRYATDRDYPERNATSRLS 229 Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKS-GAFSWLNELIWREFYRHLMAFYPSVCMGK 305 L G + R+ + +E + ++ + ++L WREFY H++ F P V Sbjct: 230 ADLKWGTIGIREVYAATEEAAENADSDDEAKSVEEFQSQLAWREFYTHVLYFNPDVVTQN 289 Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365 + + I W +D L AWK+G TG+PI+DA MRQL +MHNR+RMI ASFL KDL Sbjct: 290 -YKEYENDIAWREDEEALTAWKEGRTGYPIVDAGMRQLREEAYMHNRMRMIVASFLTKDL 348 Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425 L+DWR G +F + L D D A++NGGWQWAASTG D+ PYFRIFNP QG+R+DP T+I Sbjct: 349 LIDWREGYAHFRAYLADHDTANDNGGWQWAASTGTDAQPYFRIFNPMTQGERYDPDATYI 408 Query: 426 RHWLPELNNVPTQYIHAPH--SWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478 + ++PEL + IH S ++ ++ YP PIV+H K ++ + AA+ Sbjct: 409 QQYVPELRDATADEIHDWPNLSPTERETVAPEYPDPIVEHSKRRDQAISMFEAAR 463 >gi|148256271|ref|YP_001240856.1| deoxyribodipyrimidine photo-lyase type I [Bradyrhizobium sp. BTAi1] gi|146408444|gb|ABQ36950.1| deoxyribodipyrimidine photo-lyase type I [Bradyrhizobium sp. BTAi1] Length = 481 Score = 390 bits (1002), Expect = e-106, Method: Composition-based stats. Identities = 152/484 (31%), Positives = 238/484 (49%), Gaps = 18/484 (3%) Query: 6 AMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASL 65 + S +VW R LR++D+ AL+AA S A VI ++ E + ++ SL Sbjct: 2 SFSPIVVWFRESLRLSDHPALHAAA-TSGAPVICCYVYDTESAALRPLGGASRWWLAQSL 60 Query: 66 LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125 +Q L G+ + S + + + + +++N + +E Sbjct: 61 RALQDELDALGVKLVIRRGP----SAKAISELAREASTSAVYWNDVAQTGPRAVAAEVEA 116 Query: 126 RLQH-RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL 184 L V + F D +L+ P + + +V+TPF K ++ +PV Sbjct: 117 ALDAIGVKSRVFADDLLIDPAELRGKDGRGPRVFTPFWKRVLALGDPPKPLPVPVRLSSP 176 Query: 185 TGPVTPSNIPRFFDYPFQ----AIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ 240 +G + + + + + GE+ A L KF + V Y RD P I+ Sbjct: 177 SGVASLTVDKLALEPTSPDWAGGLRTTWRAGERAAQARLAKFLETTVRGYAADRDRPDIE 236 Query: 241 GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPS 300 TS+LSP+L G +SPRQ W+ + + G +L+EL WREF RHL+ P Sbjct: 237 ATSRLSPHLRFGEISPRQIWHAAR-FAAEQQPAFARGIDKFLSELGWREFSRHLLFNNPD 295 Query: 301 VCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASF 360 + + P + W++D+ L+AW++G TG+PI+DA MR+L G MHNR+RM+ AS Sbjct: 296 LAT-RNLQPSFDAFPWSQDAAALRAWQRGQTGYPIVDAGMRELWHTGSMHNRVRMVAASL 354 Query: 361 LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDP 420 LVK LL+DWR+GE++F L+D D SN WQW A +G D+ PYFR+FNP +QG++FD Sbjct: 355 LVKHLLIDWRLGEQWFWDTLVDADPGSNPASWQWVAGSGADAAPYFRVFNPVLQGEKFDS 414 Query: 421 QGTFIRHWLPELNNVPTQYIHAPHSWL------DKNDLSLNYPLPIVDHKKACHHTLNQY 474 GT++R W+PEL +P IH P + L +YP P+VDH+ L Y Sbjct: 415 SGTYVRRWVPELARLPAALIHQPWAAKPLELAEAGVVLGRSYPAPVVDHRHGRERALAAY 474 Query: 475 YAAK 478 + + Sbjct: 475 ASLR 478 >gi|260436423|ref|ZP_05790393.1| deoxyribodipyrimidine photo-lyase [Synechococcus sp. WH 8109] gi|260414297|gb|EEX07593.1| deoxyribodipyrimidine photo-lyase [Synechococcus sp. WH 8109] Length = 477 Score = 390 bits (1002), Expect = e-106, Method: Composition-based stats. Identities = 163/485 (33%), Positives = 226/485 (46%), Gaps = 26/485 (5%) Query: 8 SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQ----HGISARQSHFIYA 63 S L W R DLR+ DN L AA S A V V++ P+ ++ + F+ Sbjct: 4 SRVLFWHRRDLRLADNLGLVAATDISPA-VTGVYVLDPQLINPTEHLPPMAPARLWFLIE 62 Query: 64 SLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLL 123 SL+++Q+ + G + D + L Q + ++R E RD+ + Sbjct: 63 SLVELQQRWREAGSRLLVVKG----DPVAVLPQLAQQIGAEAVVWSRDVEPYARERDRQV 118 Query: 124 EKRLQHRV-ICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAI 182 K+LQ D +L+ P + Y+VY PF + ++ ++ P Sbjct: 119 AKKLQADGRKVVVDWDQLLIAPELLKTGGGDPYRVYGPFLRNWRGQVLAKQPSTVAAPTG 178 Query: 183 RLTGPVTPSNIPRFFDYPFQAIDPMFPI--------GEQNALHILRKFCKEKVYYYVEQR 234 + + P+ +P F GE AL L FC + Y R Sbjct: 179 LV--DLDPAQLPALESLEALRESHGFKGAEICPCRPGEAAALAQLNSFCDGPLLAYEPDR 236 Query: 235 DIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPK-SGAFSWLNELIWREFYRH 293 + P GTS LS LS+G LSPRQ W ++ + W EL WREFY+ Sbjct: 237 NFPGTAGTSYLSAALSVGTLSPRQAWCAAQDSREQARSEEHLQAIAVWEQELGWREFYQQ 296 Query: 294 LMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRL 353 + +P + G P+ + W + WK+G TG PIIDAAMRQLN GWMHNR Sbjct: 297 ALFHFPELADG-PYREKWHRFPWENNEDWFDFWKEGQTGMPIIDAAMRQLNQTGWMHNRC 355 Query: 354 RMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTI 413 RMI AS+LVKDL+ DWR GE FM +DGDLA+NNGGWQW+AS+G D P RIFNP Sbjct: 356 RMIVASYLVKDLICDWRWGERAFMELEVDGDLAANNGGWQWSASSGMDPKP-LRIFNPAT 414 Query: 414 QGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQ 473 Q +FD G +IR W+PEL +V T+ + S +YP P+VDHKK Sbjct: 415 QASKFDSAGDYIRQWVPELRHVNTKDL---LSGEIGALERRDYPEPLVDHKKQQARFKAL 471 Query: 474 YYAAK 478 Y + Sbjct: 472 YATLR 476 >gi|94990761|ref|YP_598861.1| deoxyribodipyrimidine photolyase [Streptococcus pyogenes MGAS10270] gi|94544269|gb|ABF34317.1| Deoxyribodipyrimidine photolyase [Streptococcus pyogenes MGAS10270] Length = 477 Score = 390 bits (1002), Expect = e-106, Method: Composition-based stats. Identities = 175/487 (35%), Positives = 249/487 (51%), Gaps = 22/487 (4%) Query: 2 KATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFI 61 + ++ V ++W R DLRI D KAL S + + VF EQ S QS FI Sbjct: 3 RRKGSVMVSVMWFRRDLRIDDQKALAHVIA-SQSPTLCVFQFNKEQLNLLH-SRNQSSFI 60 Query: 62 YASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDK 121 S+L +K L +GI + L T +++N RD+ Sbjct: 61 T-SVLAFRKLLKCEGIDLYLMYGDLMTCFEQLLTQLK---DWTDVYFNYDESGYGRLRDQ 116 Query: 122 LLEKRLQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVP 180 + + I ++ D L I+N + Q YKV+TP+ + + ++ + + Sbjct: 117 KAAQFFKKNGIAVHTYQDHYLHGSQEIINQSGQPYKVFTPYYRIWQNYPKETPIK-VELS 175 Query: 181 AIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ 240 R TP ++ R + F+ A L +F ++++ Y RD PA Sbjct: 176 QDRWLNLETPDDVLRTVE-SFKDEKYQDVATFDEASKQLNRFIQDQLAAYHANRDFPAQL 234 Query: 241 GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPS 300 GTS+LSP+L IG + R ++ +++ G ++L EL WR+FY + YP Sbjct: 235 GTSRLSPFLRIGAIGIRTVYHAVRQA------PNSLGQATFLKELAWRDFYNMVYVAYPD 288 Query: 301 VCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASF 360 +P +IEW + Q WK+G TG+PI+DAAM QL GWMHNRLRMI ASF Sbjct: 289 Q-KTQPIQKAFSQIEWVNNPDWFQLWKEGKTGYPIVDAAMLQLQKTGWMHNRLRMIVASF 347 Query: 361 LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDP 420 L KDLL DWR+GE+YF QL+D D ASN GGWQWAASTG D+VPYFRIFNP QGKRFDP Sbjct: 348 LTKDLLCDWRLGEQYFQQQLIDYDAASNIGGWQWAASTGTDAVPYFRIFNPVTQGKRFDP 407 Query: 421 QGTFIRHWLPELNNVPTQYIHAPHSWLD------KNDLSLNYPLPIVDHKKACHHTLNQY 474 +G FI+ +LP+L +VP +Y+H P + +YP PIVDH K + +Y Sbjct: 408 KGEFIKAYLPQLEHVPEKYLHEPWKMPKNLQESVSCIIGTDYPQPIVDHAKQREQAIAKY 467 Query: 475 YAAKKQS 481 AK+++ Sbjct: 468 EWAKEKA 474 >gi|40644276|emb|CAD35495.1| cryptochrome 2 [Oryza sativa Indica Group] Length = 651 Score = 390 bits (1002), Expect = e-106, Method: Composition-based stats. Identities = 136/480 (28%), Positives = 218/480 (45%), Gaps = 28/480 (5%) Query: 10 HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69 +VW R DLRI DN AL AA D V+ VFI P Q ++ SL + Sbjct: 7 TVVWFRRDLRIDDNPALAAAAR--DGVVLPVFIWCPADEGQFYPGRCSRWWLKQSLPHLS 64 Query: 70 KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH 129 +SL G + + ++E L T+L YN Y+ + RD ++K L Sbjct: 65 QSLESLGCPLVLIRAES---TLEALLRCIDSVGATRLVYNHLYDPVSLVRDDKIKKELSA 121 Query: 130 RVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188 I +SF+ +L P I + + + + + + ++ + P + G + Sbjct: 122 LGISIQSFNGDLLYEPWEIYDDSGLAFTTFNMYWEKCMELPIDISPSLAPWKLVPAPG-L 180 Query: 189 TPSNIPRFFDYPFQA----------IDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPA 238 D ++ + + G +NA +L +F + Y + Sbjct: 181 ESVRSCSVDDLGLESSKDEESSNALLRRAWSPGWRNAEKMLEEFVSHGLLEYSKHGMKVE 240 Query: 239 IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFS----WLNELIWREFYRHL 294 TS LSPYL G +S R+ + ++ + + + S A ++ + RE+ R+L Sbjct: 241 GATTSLLSPYLHFGEVSVRKVYQLVRMQQIKWENEGTSEAEESIHFFMRSIGLREYSRYL 300 Query: 295 MAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLR 354 +P K + + W D ++W+QG TG+P++DA MR+L GW HNR+R Sbjct: 301 CFNFP-FTREKSLLGNLKHYPWKVDEERFKSWRQGMTGYPLVDAGMRELWATGWTHNRIR 359 Query: 355 MITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQ 414 +I +SF VK LL+ W G +YF LLD DL S+ GWQ+ + + D R+ NP +Q Sbjct: 360 VIISSFAVKFLLIPWTWGMKYFWDVLLDADLESDILGWQYISGSLPDGHELSRLDNPEVQ 419 Query: 415 GKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWL------DKNDLSLNYPLPIVDHKKACH 468 G+++DP G ++R W+PEL +PT++IH P +L NYP PIVD A Sbjct: 420 GQKYDPDGVYVRTWIPELARMPTEWIHHPWDAPSCILEVAGVELGFNYPKPIVDLHIARE 479 >gi|325928738|ref|ZP_08189908.1| deoxyribodipyrimidine photo-lyase type I [Xanthomonas perforans 91-118] gi|325540906|gb|EGD12478.1| deoxyribodipyrimidine photo-lyase type I [Xanthomonas perforans 91-118] Length = 472 Score = 390 bits (1002), Expect = e-106, Method: Composition-based stats. Identities = 153/480 (31%), Positives = 224/480 (46%), Gaps = 17/480 (3%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 MS +VW R DLR+ DN AL AA I ++I P + + A + + SL Sbjct: 1 MSYAIVWFRRDLRLEDNPALRAALDAGHHP-IPLYIDAPHEEGEWTPGAASRTWRHRSLA 59 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 + +L G +S + LD Q +++NR+YE RD +++ Sbjct: 60 ALDGALRALGSGLVIRSG----NSAQVLDEVIAQTGAAAVYWNRKYEPATQPRDAQIKRD 115 Query: 127 LQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185 L+ R I +S + ++L P + YKV+TPF + + L P L Sbjct: 116 LRERGIEVQSCNAALLFEPWQLSTQQGGPYKVFTPFWRNALTQLQLPAAMDAPRRLPPLP 175 Query: 186 GPVTPSNIPRFFDYPF----QAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQG 241 + + P Q + GE A +L F + Y E RD P G Sbjct: 176 ASLKTDALDTLQLVPGLQWDQGFWEHWQPGEAGAHEMLEIFIDGALSGYRENRDRPDRVG 235 Query: 242 TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSV 301 TSQLSP+L G ++P + + L+ + + +++ +L WR+F HL+ +P Sbjct: 236 TSQLSPHLHFGEIAPWRIASTLETH---RTARNGAEIDAYIRQLGWRDFAYHLLHHFPD- 291 Query: 302 CMGKPFIPWTEKIEWNK-DSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASF 360 + P +W D LQAW++G TG PI+DA MRQL GWMHNR+RMI ASF Sbjct: 292 TTNQNLNPRFAGFDWATVDPVALQAWQRGRTGIPIVDAGMRQLWHTGWMHNRVRMIVASF 351 Query: 361 LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDP 420 L K L + W G +F L+D DLA+N GWQW A TG D+ PYFR+FNP Q ++FDP Sbjct: 352 LCKHLRIHWIEGARWFWDTLVDADLANNTLGWQWVAGTGADAAPYFRVFNPVTQAEKFDP 411 Query: 421 QGTFIRHWLPELNNVPTQYIHAPH-SWLDKNDLSLNYPL-PIVDHKKACHHTLNQYYAAK 478 Q +I W+PEL + + AP L + YP PI+ + L Y ++ Sbjct: 412 QAAYITRWVPELGKLAVKERFAPWLHPLSLARFAPEYPRNPIIGLAEGRDAALAAYAKSR 471 >gi|294626579|ref|ZP_06705177.1| photolyase [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] gi|292599146|gb|EFF43285.1| photolyase [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] Length = 484 Score = 390 bits (1002), Expect = e-106, Method: Composition-based stats. Identities = 153/483 (31%), Positives = 224/483 (46%), Gaps = 17/483 (3%) Query: 4 TTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYA 63 MS +VW R DLR+ DN AL AA I ++I P + + A + + Sbjct: 10 RVRMSYAIVWFRRDLRLEDNPALRAALDAGHHP-IPLYIDAPHEEGEWTPGAASRTWRHR 68 Query: 64 SLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLL 123 SL + +L G +S + LD Q +++NR+YE RD + Sbjct: 69 SLAALDGALRALGSGLVIR----VGNSAQVLDEVIAQTGAVAVYWNRKYEPATQPRDAQI 124 Query: 124 EKRLQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAI 182 ++ L+ R I +S + ++L P + YKV+TPF + + L P Sbjct: 125 KRDLRERGIEVQSCNCALLFEPWQLSTQQGGPYKVFTPFWRNALTQLQLPAAMGAPRSLP 184 Query: 183 RLTGPVTPSNIPRFFDYPF----QAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPA 238 L + + P Q + GE A +L F + Y E RD P Sbjct: 185 PLPASLKTDALDMLQLVPGVQWDQGFWEHWRPGEAGAHEMLEIFIDGALSGYRENRDRPD 244 Query: 239 IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFY 298 GTSQLSP+L G ++P + + L+ + + ++ +L WR+F HL+ + Sbjct: 245 RVGTSQLSPHLHFGEIAPWRIASTLETH---RTARNGAEIDGYIRQLGWRDFAYHLLHHF 301 Query: 299 PSVCMGKPFIPWTEKIEWNK-DSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMIT 357 P + P +W D LQAW++G TG PI+DA MRQL GWMHNR+RMI Sbjct: 302 PD-TTNQNLNPRFAGFDWATVDPVALQAWQRGRTGIPIVDAGMRQLWHTGWMHNRVRMIV 360 Query: 358 ASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKR 417 ASFL K L + W G +F L+D DLA+N GWQW A TG D+ PYFR+FNP Q ++ Sbjct: 361 ASFLCKHLRIHWIEGARWFWDTLVDADLANNTLGWQWVAGTGADAAPYFRVFNPVTQAEK 420 Query: 418 FDPQGTFIRHWLPELNNVPTQYIHAPH-SWLDKNDLSLNYP-LPIVDHKKACHHTLNQYY 475 FDPQ +I W+PEL + + AP L ++ YP PI+ + L Y Sbjct: 421 FDPQAAYITRWVPELGKLAVKERFAPWLHPLSLARVAPQYPRAPIIGLAEGRDAALAAYT 480 Query: 476 AAK 478 ++ Sbjct: 481 KSR 483 >gi|89094232|ref|ZP_01167174.1| Deoxyribodipyrimidine photolyase [Oceanospirillum sp. MED92] gi|89081487|gb|EAR60717.1| Deoxyribodipyrimidine photolyase [Oceanospirillum sp. MED92] Length = 468 Score = 390 bits (1001), Expect = e-106, Method: Composition-based stats. Identities = 186/475 (39%), Positives = 265/475 (55%), Gaps = 16/475 (3%) Query: 9 VHLVWLRNDLRITDNKALYAAC-HNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67 + LVW RNDLR D+ ALY AC N+ V+ V I TP QW+ S + F A+L Sbjct: 1 MKLVWFRNDLRTGDHHALYQACMDNTGEGVLGVAIITPVQWKIQDESKSRVQFWRANLES 60 Query: 68 VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127 + L I + + + L + +V+ +++NR+Y + E +RD + + Sbjct: 61 LSCDLQSLNIPLLILRVPSNREIPALLVELAKRYQVSGVYFNREYPLYEQQRDNAVISAM 120 Query: 128 QH-RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 V C SFD V+LP G++LN +KV+TPF K Q + ++ + LPVP ++ Sbjct: 121 AEISVPCLSFDSDVVLPAGTVLNQQGLPFKVFTPFSKRWRQQYLTSNPQPLPVPPVQAKL 180 Query: 187 PVTPSNIPRFFDYPF----QAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGT 242 ++ ++P+ YP +P G + A +L+ + EKV Y + RD PA GT Sbjct: 181 DISTDSVPKEICYPITVGADWSSERWPAGTEAAHKLLQHYVLEKVADYKQSRDFPAEPGT 240 Query: 243 SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVC 302 S LSPYLS+GVLS RQC ++ F +P+ W+ ELIWREFYRHL+ +P + Sbjct: 241 SSLSPYLSVGVLSTRQCLAAMQAYF----DQPEWFDSQWVTELIWREFYRHLLVLFPEMN 296 Query: 303 MGKPFIPWTE-KIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFL 361 +PF P E K+ W D L QAW +G TGF I+DA M++L GWMHNR+RMITASFL Sbjct: 297 RWEPFKPEVEEKLSWQYDESLFQAWCKGETGFAIVDAGMKELLETGWMHNRVRMITASFL 356 Query: 362 VKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQ 421 K L DWR+G +FM L+DGD ASN GGWQW+AS G D+ PYFRIFNP Q +RFD + Sbjct: 357 TKLLRQDWRLGARFFMQHLIDGDFASNLGGWQWSASVGADAAPYFRIFNPMRQAERFDAK 416 Query: 422 GTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYA 476 G ++ ++P L + + H P + P PI+D+ ++L+ Y A Sbjct: 417 GRYVGQYVPSLQGLTSVQQHDPMFAASYSR-----PTPIIDYAYERQYSLDAYKA 466 >gi|289662993|ref|ZP_06484574.1| photolyase [Xanthomonas campestris pv. vasculorum NCPPB702] Length = 484 Score = 389 bits (1000), Expect = e-106, Method: Composition-based stats. Identities = 156/481 (32%), Positives = 231/481 (48%), Gaps = 19/481 (3%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 MS +VW R DLR+ DN AL AA I ++I + + A + + SL Sbjct: 13 MSYAIVWFRRDLRLEDNPALRAALDAGHHP-IPLYIDALHEEGEWTPGAASRTWRHRSLA 71 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 + +L +G DS + LD Q +++NR+YE RD +++ Sbjct: 72 ALDDALRARGSGLVIR----AGDSAQVLDEVIAQTGAVAVYWNRKYEPATQPRDAQIKRA 127 Query: 127 LQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNL-----VQADLRSLPVP 180 L+ R I +S + ++L P + YKV+TPF + + L V A P+P Sbjct: 128 LRERGIEAQSCNSALLFEPWQLSTQQGGPYKVFTPFWRNALTQLQLPAAVPAPRSLPPLP 187 Query: 181 AIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ 240 A T + + ++ Q + GE A +L F + Y E RD P Sbjct: 188 AALKTDALDTLQLVSSLNWD-QGFWEHWQPGEAGAHEMLEIFIDGALSGYRENRDRPDRV 246 Query: 241 GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPS 300 GTSQLSP+L G ++P + + L+ + + ++ +L WR+F +L+ +P Sbjct: 247 GTSQLSPHLHFGEIAPWRIASTLEAH---RTARNCAEIDGYIRQLGWRDFAYYLLHHFPD 303 Query: 301 VCMGKPFIPWTEKIEWNK-DSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITAS 359 + P E +W K D L AW++G TG PI+DA MRQL GWMHNR+RMI AS Sbjct: 304 -TTNQNLNPRFEGFDWAKVDPVALHAWQRGRTGIPIVDAGMRQLWHTGWMHNRVRMIVAS 362 Query: 360 FLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFD 419 FL K L + W G +F L+D DLA+N GWQW A TG D+ PYFR+FNP Q ++FD Sbjct: 363 FLCKHLRIHWIEGARWFWDTLVDADLANNTLGWQWVAGTGADAAPYFRVFNPVTQAEKFD 422 Query: 420 PQGTFIRHWLPELNNVPTQYIHAPH-SWLDKNDLSLNYPL-PIVDHKKACHHTLNQYYAA 477 PQ T+I W+PEL + + AP L + YP P++ + L Y + Sbjct: 423 PQATYITRWVPELGKLAVKERFAPWLHPLSLARFAPEYPRTPVIGLAEGRDAALAAYAKS 482 Query: 478 K 478 + Sbjct: 483 R 483 >gi|332978155|gb|EGK14890.1| deoxyribodipyrimidine photo-lyase [Psychrobacter sp. 1501(2011)] Length = 566 Score = 389 bits (1000), Expect = e-106, Method: Composition-based stats. Identities = 180/553 (32%), Positives = 261/553 (47%), Gaps = 88/553 (15%) Query: 11 LVWLRNDLRITDNKALYA--------------------------ACH-----NSDAKVIA 39 L+W R DLR+ DN AL A ++ K+ A Sbjct: 13 LMWFRRDLRVEDNTALSQLTDLAKQALTQNDPSQLDVSQSSVSKAAQPTILNSAQPKIHA 72 Query: 40 VFIATPEQWRQHGISARQSHFIYASLLQVQKSL-SQKGIVFQYHQCSNFDDSIEWLDSYC 98 +F+ T EQW +H +S Q FI+ +L + SL +Q I + ++FD IE + ++C Sbjct: 73 LFVVTAEQWLEHDMSIVQMDFIFRTLKVLATSLFNQLNIELHVLKTADFDSCIETVANFC 132 Query: 99 LQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR-VICKSFDDSVLLPPGSILNHALQMYKV 157 Q +T + N +YE+NE++RD +E+RL+ + + + D +LPP ++ + MYKV Sbjct: 133 QQHSITHMASNYEYEVNEMQRDAAIEQRLKQQDIEFSRYHDQCILPPKALTTNDETMYKV 192 Query: 158 YTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYP----------------- 200 +TPF K L + + P Sbjct: 193 FTPFYKKWQSILETSPPNLYSTEKVNSDKPTAERLSQILATIDDLHQQTLRLFSKAYFET 252 Query: 201 -----------FQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYL 249 + + F GE A L+ F E V Y RD P+++ TS+LS YL Sbjct: 253 ESVNQDHQAQLLKNAEETFVAGEVAAYQQLQTFLAEDVQRYDIARDQPSLEATSRLSAYL 312 Query: 250 SIGVLSPRQCWNRLKEEFVDLL---------------------IKPKSGAFSWLNELIWR 288 ++G +SPR C+ + K+ + + W++EL WR Sbjct: 313 TVGAISPRVCYLKAKQAAEAIYETNALNQSKKRPTKPLENSNEAGAEQDIQRWISELAWR 372 Query: 289 EFYRHLMAFYPSVCMGKPFIPWTE-KIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIG 347 +FYRH++A P + G F + K+ W+ D W QG TG P+IDAAMR LN G Sbjct: 373 DFYRHVIADRPDIVKGTAFNKVADTKVHWSYDEQDFNRWCQGQTGVPLIDAAMRCLNQTG 432 Query: 348 WMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFR 407 +MHNRLRM+TA FL KDL +DWR GE YFM +L+DGD ASNNGGWQW+AS G D+ PYFR Sbjct: 433 FMHNRLRMVTAMFLTKDLFIDWRWGERYFMQRLIDGDFASNNGGWQWSASVGTDAAPYFR 492 Query: 408 IFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLS-----LNYPLPIVD 462 I NP Q K D + FI+ WLPEL V +H ++YP P+V+ Sbjct: 493 IMNPFSQAKTHDKEAIFIKTWLPELKAVKPSILHDEAKLRQALSAKGELANVDYPQPMVE 552 Query: 463 HKKACHHTLNQYY 475 HK+A + + Q+ Sbjct: 553 HKQARLYAIGQFK 565 >gi|78047092|ref|YP_363267.1| putative photolyase [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|78035522|emb|CAJ23168.1| putative photolyase [Xanthomonas campestris pv. vesicatoria str. 85-10] Length = 500 Score = 389 bits (1000), Expect = e-106, Method: Composition-based stats. Identities = 154/481 (32%), Positives = 223/481 (46%), Gaps = 17/481 (3%) Query: 6 AMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASL 65 MS +VW R DLR+ DN AL AA I ++I P + + A + + SL Sbjct: 28 RMSYAIVWFRRDLRLEDNPALRAALDAGHHP-IPLYIDAPHEEGEWTPGAASRTWRHRSL 86 Query: 66 LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125 + +L G DS + LD Q +++NR+YE RD +++ Sbjct: 87 AALDGALRALGSGLVIRSG----DSAQVLDEVIAQTGAVAVYWNRKYEPATQPRDAQIKR 142 Query: 126 RLQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL 184 L+ R I +S + ++L P + YKV+TPF + + L P L Sbjct: 143 DLRERGIEVQSCNAALLFEPWQLSTQQGGPYKVFTPFWRNALTQLQLPAAMDAPRRLPPL 202 Query: 185 TGPVTPSNIPRFFDYPF----QAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ 240 + + P Q + GE A +L F + Y E RD P Sbjct: 203 PASLKTDALDTLQLVPGLQWDQGFWEHWQPGEAGAHEMLEIFIDGALSGYRENRDRPDRV 262 Query: 241 GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPS 300 GTSQLSP+L G ++P + + L+ + + ++ +L WR+F HL+ +P Sbjct: 263 GTSQLSPHLHFGEIAPWRIASTLEAH---RTARNGAEIDGYIRQLGWRDFAYHLLHHFPD 319 Query: 301 VCMGKPFIPWTEKIEWNK-DSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITAS 359 + P +W D LQAW++G TG PI+DA MRQL GWMHNR+RMI AS Sbjct: 320 -TTNQNLNPRFAGFDWATVDPVALQAWQRGRTGIPIVDAGMRQLWHTGWMHNRVRMIVAS 378 Query: 360 FLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFD 419 FL K L + W G +F L+D DLA+N GWQW A TG D+ PYFR+FNP Q ++FD Sbjct: 379 FLCKHLRIHWIEGARWFWDTLVDADLANNTLGWQWVAGTGADAAPYFRVFNPVTQAEKFD 438 Query: 420 PQGTFIRHWLPELNNVPTQYIHAPH-SWLDKNDLSLNYPL-PIVDHKKACHHTLNQYYAA 477 P T+I W+PEL + + AP L + YP PI+ + L Y + Sbjct: 439 PHATYITRWVPELGKLAVKERFAPWLHPLALARFAPEYPRNPIIGLAEGRDAALAAYAKS 498 Query: 478 K 478 + Sbjct: 499 R 499 >gi|255022161|ref|ZP_05294164.1| Deoxyribodipyrimidine photolyase [Acidithiobacillus caldus ATCC 51756] gi|254968425|gb|EET25984.1| Deoxyribodipyrimidine photolyase [Acidithiobacillus caldus ATCC 51756] Length = 476 Score = 389 bits (1000), Expect = e-106, Method: Composition-based stats. Identities = 160/488 (32%), Positives = 251/488 (51%), Gaps = 25/488 (5%) Query: 6 AMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASL 65 + +V RNDLR+ D+ AL+ A V+ V++ + + SL Sbjct: 2 SQPTTIVLFRNDLRLADHPALWYAAQRG--PVLPVYLRH----AADSYGSAWRWWHGESL 55 Query: 66 LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125 L++Q +L+Q+G+ + + L +++NR+Y+ + + D+ L+ Sbjct: 56 LKLQAALAQRGLPLLLRSGT----AKAVLPEIVRASGADAVYWNRRYDRDGIAEDQELKS 111 Query: 126 RLQH-RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL 184 + V +SF ++L+ P L Q Y+V+TPF KA++ + P Sbjct: 112 LFKELGVEARSFPGNLLVEPWEHL-REGQPYRVFTPFWKAMLARHRFPQPLAEPESYRAP 170 Query: 185 TGPVTPSNIPRFFDYPFQ-----AIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAI 239 T ++ R+ +P + + +GE+ A LR F E + +Y E R++P Sbjct: 171 TAIPASEDLARWGWHPHHPDWSIGLARHWEVGEEAAWRRLRDFVDEGLAHYAEGRNLPGK 230 Query: 240 QGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYP 299 S+LSPYL+ G +SPRQ W L + + ++L EL WREF HL+ +P Sbjct: 231 PFVSRLSPYLAHGEISPRQIWWHLSRLAEEQGA-WRRNVDAFLRELGWREFSWHLLYHFP 289 Query: 300 SVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITAS 359 + +P P ++ W +D L+AW + TG+PIIDA MR+L GWMHNR+RMI AS Sbjct: 290 DLPR-EPLRPEFQRFPWRQDPAALRAWTRARTGYPIIDAGMRELWESGWMHNRVRMIVAS 348 Query: 360 FLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFD 419 FLVKDL + W+ GE +F L+D DLA+N+ WQW A G D+ PYFR+FNP +Q ++FD Sbjct: 349 FLVKDLRIPWQEGEAWFWDTLVDADLANNSASWQWVAGCGADAAPYFRVFNPVLQAQKFD 408 Query: 420 PQGTFIRHWLPELNNVPTQYIHAPHSW------LDKNDLSLNYPLPIVDHKKACHHTLNQ 473 PQG ++R WLP+L +P +IHAP L YP P+VDH +A L Sbjct: 409 PQGDYVRRWLPQLQRLPADHIHAPWQAPAVVLEQAGIALGKEYPRPLVDHHEAREAALAA 468 Query: 474 YYAAKKQS 481 + A ++++ Sbjct: 469 WEAIRREN 476 >gi|262277239|ref|ZP_06055032.1| deoxyribodipyrimidine photo-lyase [alpha proteobacterium HIMB114] gi|262224342|gb|EEY74801.1| deoxyribodipyrimidine photo-lyase [alpha proteobacterium HIMB114] Length = 470 Score = 389 bits (1000), Expect = e-106, Method: Composition-based stats. Identities = 155/483 (32%), Positives = 252/483 (52%), Gaps = 28/483 (5%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 + + WLRND R+ DN+AL + + F+ ++ + Q ++Y +L Sbjct: 4 MLIYWLRNDFRLNDNEALSYLLSSENND----FVFFSYDKEKYKFRSAQKWWLYKTLKIF 59 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL- 127 K LS+ G+ F + +L+ +++T++ +N+ + E+ + + K L Sbjct: 60 DKKLSEIGVKFIVENDLEY----SFLEKIIKNKKITEVCWNKIFSPEEIAIENNIIKLLE 115 Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187 ++ + K F ++L P ++V+TPF K ++ I+ Sbjct: 116 KNNIKYKIFSSNLLQNPDQCRKKDNTPFQVFTPFWKNAEMIYLKN--YKYKKNLIKSKKS 173 Query: 188 VTPSNIPRFFDY-----PFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGT 242 + +N + ++ + + GE AL ++ F EK+ +Y + RD P+I+GT Sbjct: 174 LKNNNQSKIETILPKKKWYEKFEKYWFPGEDIALKKIKSFNSEKINFYDKNRDFPSIEGT 233 Query: 243 SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVC 302 S+LSP+L+ G +SP++ ++ + + K G +LNE+ WREF HL+ +P + Sbjct: 234 SKLSPHLAFGEISPKKIYDECTK-----IKNKKIGVTKFLNEIGWREFAYHLINHFP-IM 287 Query: 303 MGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLV 362 + K +K W+++ L WK+G TG+PI+DAAM+QL GWMHNRLRM+ SFLV Sbjct: 288 LKKNLRKNFDKFPWSENKKFLDKWKKGNTGYPIVDAAMKQLYETGWMHNRLRMVVGSFLV 347 Query: 363 KDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQG 422 K L ++W GE+YF LLD D A+N GWQW A G D+ PYFRIFNP QG++FDP G Sbjct: 348 KHLRINWTEGEKYFKDTLLDYDTANNVSGWQWIAGCGADAAPYFRIFNPITQGEKFDPNG 407 Query: 423 TFIRHWLPELNNVPTQYIHAPHSWLDKN------DLSLNYPLPIVDHKKACHHTLNQYYA 476 F+++W+P L VP ++IH P ++ +L +Y PIVDHK A L + Sbjct: 408 EFVKYWIPNLKKVPKKFIHKPWELPEEQAKLINFNLIKDYFEPIVDHKIAREAALKAFEF 467 Query: 477 AKK 479 KK Sbjct: 468 TKK 470 >gi|126728554|ref|ZP_01744369.1| Deoxyribodipyrimidine photolyase [Sagittula stellata E-37] gi|126710484|gb|EBA09535.1| Deoxyribodipyrimidine photolyase [Sagittula stellata E-37] Length = 472 Score = 389 bits (999), Expect = e-106, Method: Composition-based stats. Identities = 170/487 (34%), Positives = 231/487 (47%), Gaps = 36/487 (7%) Query: 5 TAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYAS 64 T LVW R DLR++D+ AL A S VI VFI G+ + Sbjct: 2 TDTPPTLVWFRRDLRLSDHAALTEAA--SGGPVIPVFIRD---ALVDGLGTAPQWRLGLG 56 Query: 65 LLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLE 124 L ++L KG ++E L + ++++R Y+ + V RD ++ Sbjct: 57 LKSFAEALEAKGSRLILRSGP----AVEVLSELVNETGAKAVYWSRAYDPDSVDRDTRVK 112 Query: 125 KRLQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIR 183 + L+ I +SF +L P ++ YKVYTPF KA+ V A L S Sbjct: 113 ETLKGDGIDAQSFTGHLLFEPWTVETGQGGFYKVYTPFWKAVRGCDVPAALSS----PSD 168 Query: 184 LTGPVTPSNIPRFFDY--------PFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRD 235 L P T + D+ + P +GEQ A L F ++KV Y RD Sbjct: 169 LQAPATWPDGETLADWELGKGMRRGADVVRPYVQLGEQAAQTRLGVFMRDKVADYATTRD 228 Query: 236 IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLM 295 + GTS LS LS+G +SP QCW+ D K GA ++L EL+WREF HLM Sbjct: 229 EVSKDGTSCLSENLSLGEISPAQCWHAGCRAIED----GKPGAETFLKELVWREFAYHLM 284 Query: 296 AFYPSVCMGKPFIPWTEKIEWNKDSHL--LQAWKQGYTGFPIIDAAMRQLNTIGWMHNRL 353 P + G W + W D L ++AWKQG TG P +DAAMR+L G MHNR Sbjct: 285 WHTPRLLDGNWRQEW-DGFPWKTDERLREVKAWKQGRTGIPFVDAAMRELYVTGRMHNRA 343 Query: 354 RMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTI 413 RMI AS+L K L+ W+IG +F L+D D ASN GWQW+A +G D+ PYFR+FNP Sbjct: 344 RMIVASYLTKHLMCHWKIGMAWFEDCLIDWDPASNALGWQWSAGSGPDATPYFRVFNPVT 403 Query: 414 QGKRFDPQGTFIRHWLPELNNVPTQ----YIHA-PHSWLDKNDLSLNYPLPIVDHKKACH 468 Q ++FDP ++ W+ E P+ Y A P SW YP PIVD K+ Sbjct: 404 QREKFDPDCAYVTRWIAEGRKSPSDTALSYFDAIPESWPMAP--GDAYPDPIVDPKEGRE 461 Query: 469 HTLNQYY 475 L+ Y Sbjct: 462 AALDAYQ 468 >gi|209364020|ref|YP_002268317.1| deoxyribodipyrimidine photolyase [Coxiella burnetii Dugway 5J108-111] gi|207081953|gb|ACI23155.1| deoxyribodipyrimidine photolyase [Coxiella burnetii Dugway 5J108-111] Length = 452 Score = 389 bits (999), Expect = e-106, Method: Composition-based stats. Identities = 168/445 (37%), Positives = 248/445 (55%), Gaps = 18/445 (4%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 + W R DLR++DN AL A ++D +I ++I + + Q +++ SL + Sbjct: 2 TTIFWFRQDLRLSDNPALVEAAKSAD-HLIPLYILDDQL---KMLGDAQRWWLHHSLSSL 57 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128 Q +LS+KG + D+ L + +V K+++NR YE D LE RL Sbjct: 58 QTALSKKGTSLILKKG----DTKRVLLELIKKYKVEKIYWNRSYEPPYREIDTYLENRLP 113 Query: 129 HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVP-----AIR 183 + + + ++L P I N + YK++TPF K + +L + P AI+ Sbjct: 114 P-LSVEIYHSTLLTEPQKIKNKSGGYYKIFTPFWKHINASLQPRKTLAAPKKFSQHRAIK 172 Query: 184 LTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS 243 T + +P+ D+ Q D + GE+NA +L+KF KE + Y RD P I TS Sbjct: 173 SDNLETWNLLPKHPDWS-QGFDQ-WKPGEKNAQIVLKKFIKENLKNYPAHRDRPDISSTS 230 Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCM 303 LSPYL G +S RQ W + + + + A +L +LIWREF +L+ +P + Sbjct: 231 HLSPYLHFGEISIRQVWTAITQATIQ-DKNLQKAADVFLRQLIWREFAYYLLWHFPQMGK 289 Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363 F + +W K+ + L+AW++G TG+PI+DA MR+L G+MHNR RMI ASFLVK Sbjct: 290 SN-FRNQFDNFKWKKNKNWLRAWQKGLTGYPIVDAGMRELWCTGYMHNRARMIVASFLVK 348 Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423 DL++DWR GE++F + LLD DLA+N GWQW A G D+ PYFRIFNP +Q K+FDP GT Sbjct: 349 DLMIDWREGEKWFWNTLLDADLANNALGWQWIAGCGLDAAPYFRIFNPILQSKKFDPDGT 408 Query: 424 FIRHWLPELNNVPTQYIHAPHSWLD 448 +I+ W+PEL VP++YIH P D Sbjct: 409 YIKRWIPELAKVPSKYIHYPADMPD 433 >gi|292657024|ref|YP_003536921.1| deoxyribodipyrimidine photolyase [Haloferax volcanii DS2] gi|291372710|gb|ADE04937.1| deoxyribodipyrimidine photolyase [Haloferax volcanii DS2] Length = 484 Score = 389 bits (999), Expect = e-106, Method: Composition-based stats. Identities = 150/490 (30%), Positives = 227/490 (46%), Gaps = 29/490 (5%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 + L W R DLR+ DN+ L A V +F+ + A + ++ +L ++ Sbjct: 1 MQLHWHRRDLRVADNRGLATAAEAG--PVAPLFVFDRDVLD--HAGAPRVRYLLDALAEL 56 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128 + + ++G + + + + + Y RD + L Sbjct: 57 RGAYQERGSDLLVARGDPR----TVVPAVAAAFDAERAVWGIDYSGLARERDADVRLALD 112 Query: 129 HRVICKS-FDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187 + + D++ PPGSI +A Y VYT F K + Sbjct: 113 DAGVAREPVHDAIFHPPGSITTNAGDTYSVYTYFWKKWRDRDKPDPYPEPDADDLVDAAT 172 Query: 188 VTPSN----------------IPRFFDYPFQ-AIDPMFPIGEQNALHILRKFCKEKVYYY 230 + + +P D F+ + P G + A L FC + +Y Y Sbjct: 173 LESAAEDLTNGDAEFDIAVGGLPTISDLGFEEPSASVQPAGTEAARERLSAFCADAIYRY 232 Query: 231 VEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREF 290 + RD P TS+LS L G + R+ + + + + ++L WREF Sbjct: 233 ADDRDYPTRDATSRLSTDLKFGTIGIREVYAATAAAREGVGGERDESVEEFQSQLAWREF 292 Query: 291 YRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMH 350 Y H++ +P+V + + E I W D L AWK G TG+PI+DA MRQL +MH Sbjct: 293 YAHVLRGHPNVVTEN-YKEYEEDIAWRDDDEELAAWKAGETGYPIVDAGMRQLREEAYMH 351 Query: 351 NRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFN 410 NR+RMI ASFL KDLL DWR G +F L D D A++NGGWQWAASTG D+ PYFRIFN Sbjct: 352 NRVRMIVASFLTKDLLCDWRHGYAHFREHLADHDTANDNGGWQWAASTGTDAQPYFRIFN 411 Query: 411 PTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSW--LDKNDLSLNYPLPIVDHKKACH 468 P QG+R+DP G +I+ ++PEL++V IH H L++ L+ +YP PIVDH + Sbjct: 412 PMTQGERYDPDGEYIKRYVPELSDVTANTIHEWHELTDLERERLAPDYPEPIVDHAERRE 471 Query: 469 HTLNQYYAAK 478 ++ + AA+ Sbjct: 472 RAISMFEAAR 481 >gi|146297827|ref|YP_001192418.1| deoxyribodipyrimidine photo-lyase [Flavobacterium johnsoniae UW101] gi|146152245|gb|ABQ03099.1| Deoxyribodipyrimidine photo-lyase [Flavobacterium johnsoniae UW101] Length = 431 Score = 388 bits (998), Expect = e-106, Method: Composition-based stats. Identities = 150/474 (31%), Positives = 222/474 (46%), Gaps = 50/474 (10%) Query: 5 TAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYAS 64 T V W R DLR+ DN L+ A SD VI +FI + + + FIY S Sbjct: 2 TKQKVSFFWFRRDLRLEDNTGLFHALQ-SDLPVIPLFIFDEDILDNLPKNDARVSFIYDS 60 Query: 65 LLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLE 124 L ++ L+ + S + + +F+N+ YE ++RD + Sbjct: 61 LQKINNELNTFESSILIKKGKT----TAVWKSLLSEFDIQNVFFNKDYEPFAIKRDTAIC 116 Query: 125 KRLQHR-VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQ-ADLRSLPVPAI 182 L+ V C SF D V+ I Y VYTP++ ++ + ++ Sbjct: 117 SLLKENNVECFSFKDHVIFEEKEITKADGSPYTVYTPYKNKWLEKYHFLGTVPECDSSSM 176 Query: 183 RLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGT 242 T + P + F+ + +L + + Y E RD PA+ T Sbjct: 177 HSNFAKTKFSFPDLTEIGFKRST----------IKVLPHNLTQ-IANYKETRDFPALDST 225 Query: 243 SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVC 302 S LSP+L G +S R+ N + ++L+ELIWREF+ ++ +P+ C Sbjct: 226 SYLSPHLRFGTVSIRKLVNWANRKNQ-----------TFLSELIWREFFIQILFSFPN-C 273 Query: 303 MGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLV 362 + F + I+W + + W G TG+P++DA MRQLN G+MHNR+RM+ ASFL Sbjct: 274 VNHNFKSAYDGIQWRNNEEDFKRWCSGNTGYPMVDAGMRQLNETGYMHNRVRMVVASFLC 333 Query: 363 KDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQG 422 K LL++W+ GE YF +LLD +LASN G WQWAA TG D+ PYFR+FNP IQ K+FD +G Sbjct: 334 KHLLINWQWGEAYFAEKLLDFELASNVGNWQWAAGTGCDAAPYFRVFNPEIQQKKFDEKG 393 Query: 423 TFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYA 476 +IR W+PE + Y P+VDH A T+ Y A Sbjct: 394 EYIRKWIPEFD--------------------FGYAEPMVDHAFARDRTIATYKA 427 >gi|332293614|ref|YP_004432223.1| Deoxyribodipyrimidine photo-lyase [Krokinobacter diaphorus 4H-3-7-5] gi|332171700|gb|AEE20955.1| Deoxyribodipyrimidine photo-lyase [Krokinobacter diaphorus 4H-3-7-5] Length = 465 Score = 388 bits (998), Expect = e-106, Method: Composition-based stats. Identities = 145/480 (30%), Positives = 223/480 (46%), Gaps = 48/480 (10%) Query: 2 KATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFI 61 ++ V++ W R DLR+ DN A D V+ +FI E + + FI Sbjct: 28 TTMSSNKVNIFWFRRDLRLDDNVGFLEALK-GDLPVLPIFIFDKEILDKLPKDDARVTFI 86 Query: 62 YASLLQVQKSLS-QKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120 + +L +++ +L + +D + + +F NR YE RD Sbjct: 87 FETLQKMRSTLQDEHASSL----AMYYDTPEKVFKQLSKDFEIATVFTNRDYEPYAKERD 142 Query: 121 KLLEKRLQHR-VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPV 179 +++ L+ + K+F D V+ ++ Y VYTPF+ + ++ Sbjct: 143 EVISSLLKDNDIEFKTFKDQVIFEKDEVVKGDGDPYVVYTPFKNKWKERFDTDKDLTIHY 202 Query: 180 PAIRLTGPVTPSNIPRFF--DYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIP 237 + L + S +P D F+ P E + L + Y + R+ P Sbjct: 203 TSQHLNNLIEHSRLPNLSLSDMGFEKSSIEVP--EYDVTPTL-------IQNYEDTRNFP 253 Query: 238 AIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAF 297 A GTS L P+L G +S R+ + E ++ + +ELIWREF+ ++ Sbjct: 254 AQDGTSHLGPHLRFGTVSVRKMMKKAIAETNEI----------FWSELIWREFFMQILFH 303 Query: 298 YPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMIT 357 +P K F ++IEW + + WK G TG+ ++DA MR+LNT G+MHNR+RM+ Sbjct: 304 FPH-TKDKAFRSKYDRIEWRNNEDEFEKWKNGETGYLLVDAGMRELNTTGYMHNRVRMLV 362 Query: 358 ASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKR 417 ASFL K LL+DWR GE YF +LLD +++SN G WQWAA +G D+ PYFRIFNP Q + Sbjct: 363 ASFLCKHLLIDWRWGETYFAEKLLDYEMSSNVGNWQWAAGSGVDAAPYFRIFNPITQVDK 422 Query: 418 FDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477 FD Q +I W+PE + + NYP +VDHK+A L Y A Sbjct: 423 FDKQKEYISKWIPEHD-------------------TDNYPEKMVDHKEARERCLKTYKEA 463 >gi|257868228|ref|ZP_05647881.1| deoxyribodipyrimidine photo-lyase type I [Enterococcus casseliflavus EC30] gi|257874499|ref|ZP_05654152.1| deoxyribodipyrimidine photo-lyase type I [Enterococcus casseliflavus EC10] gi|257802342|gb|EEV31214.1| deoxyribodipyrimidine photo-lyase type I [Enterococcus casseliflavus EC30] gi|257808663|gb|EEV37485.1| deoxyribodipyrimidine photo-lyase type I [Enterococcus casseliflavus EC10] Length = 469 Score = 388 bits (998), Expect = e-106, Method: Composition-based stats. Identities = 168/479 (35%), Positives = 252/479 (52%), Gaps = 26/479 (5%) Query: 12 VWLRNDLRITDNKALYAACH--NSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69 +W R DLR+ DN AL A ++ +++ VF +Q+ S + ++++ Sbjct: 2 MWFRKDLRLEDNTALTEALASLQANDQLLCVFHLNDKQFLPDAPS---HDYFFSAVAHFI 58 Query: 70 KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH 129 ++ ++ + ++ + L + + ++L++N +RD + + ++ Sbjct: 59 EAAKKQNLTIHLLTG-TLTEAFDQLFACYPEW--SQLYFNFDNRGYGRKRDLYITELVEQ 115 Query: 130 RVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQ---NLVQADLRSLPVPAIRLT 185 + I SF+D L P + YK +TP+ K IQ + Q A Sbjct: 116 KGITVHSFEDHHLHQPTEVTKEDGTYYKKFTPYYKKWIQLPKPVYQKHALDFEKAAHFND 175 Query: 186 GPVTPSNIPRFFDY-PFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244 P + + + D +GE A L+ F ++++ Y + RDIP+I+GTS+ Sbjct: 176 APHFKAGTMLLAELIKNRKTDFSTIVGEDYAHKQLQAFVQKRLAAYEKDRDIPSIKGTSR 235 Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304 LSP+LS G +S R+ W +E + +G ++L EL WR+FY + +P Sbjct: 236 LSPFLSFGQISIRKVWAACQE------MPSSTGKATFLKELAWRDFYHMIYFTHPEQ-KN 288 Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364 I ++W KD L W+ G TG+PIIDAAMRQLN GWMHNRLRMI ASFL KD Sbjct: 289 YELIEKYRNMDWQKDEEALNKWQAGQTGYPIIDAAMRQLNQTGWMHNRLRMIVASFLTKD 348 Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424 LL+DWR GE YF QL+D D ASN GGWQWAASTG D+VPYFRIFNP QGK+FD GTF Sbjct: 349 LLIDWRQGEAYFARQLIDYDAASNIGGWQWAASTGTDAVPYFRIFNPITQGKKFDKDGTF 408 Query: 425 IRHWLPELNNVPTQYIHAPHSWLDKND------LSLNYPLPIVDHKKACHHTLNQYYAA 477 I+ ++PEL +P +++H P+ ++ L +YPLPIVDH +A L+ Y Sbjct: 409 IKQFVPELAQLPLKFVHEPYLMTNQEQADLQIVLGTDYPLPIVDHNEARKRALDLYSKI 467 >gi|90020376|ref|YP_526203.1| deoxyribodipyrimidine photo-lyase type I [Saccharophagus degradans 2-40] gi|89949976|gb|ABD79991.1| Deoxyribodipyrimidine photo-lyase type I [Saccharophagus degradans 2-40] Length = 483 Score = 388 bits (997), Expect = e-106, Method: Composition-based stats. Identities = 166/491 (33%), Positives = 247/491 (50%), Gaps = 36/491 (7%) Query: 11 LVWLRNDLRITDNKALYAACHNSDA--KVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 L+WL N+LR++DN AL+AA ++DA +V+ +I I + +++ SL Sbjct: 4 LLWLSNNLRLSDNPALHAAVDSADANGEVLPAYIKDTA--NPWPIQGAAAWWLHHSLAAF 61 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL- 127 S+ KG V + D + Q ++ ++ ++ +E EV+ + K Sbjct: 62 TNSIKNKGGVLSLFEG----DPATLVPELISQNKIDAVYLSQGFEPYEVQLQANIHKWCK 117 Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187 QH + CK F +LL P + LN + ++V+TP+ KA + + +P ++ Sbjct: 118 QHNIECKRFAGHLLLNPDTHLNKQGKPFQVFTPYYKAALATHTIPRAKPIPSNLAKVWAA 177 Query: 188 -------VTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ 240 + + GE+ A LR+ ++K+ Y RD PA+ Sbjct: 178 KKLPKSVALNKLKLLPNLNWADQFNSQWQPGEEGAHKNLREAIEDKIASYTRDRDFPAVD 237 Query: 241 GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPS 300 GTS LS +L G +SPRQ W ++ + P +L +L+WR+F L+ +P Sbjct: 238 GTSLLSAHLRFGEISPRQIWQQVATQMDGEQCAP------FLRQLMWRDFSYALLHHWPH 291 Query: 301 VCMGKPFIPWTEKIEWNKD-----SHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRM 355 + + F EK W K + L AW+ G TG+PI+DA MRQL GWMHNR+RM Sbjct: 292 IP-QQAFKQQFEKFPWQKASNKNVAKQLHAWQTGTTGYPIVDAGMRQLWQTGWMHNRVRM 350 Query: 356 ITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQG 415 I ASFL K L + W G ++F L+D DLA+N GWQW A G D+ PYFRIFNP +QG Sbjct: 351 IVASFLTKHLRIHWHEGAKWFWDTLVDADLANNTAGWQWVAGCGADAAPYFRIFNPVLQG 410 Query: 416 KRFDPQGTFIRHWLPELNNVPTQYIHAPH----SWLDKNDLSLN----YPLPIVDHKKAC 467 ++FD QG +I+ W+PEL +P ++IHAP L +SL YPLPIVDHK A Sbjct: 411 EKFDKQGEYIKTWVPELAALPAKFIHAPWLAPQDILQTAGISLGNNSTYPLPIVDHKYAR 470 Query: 468 HHTLNQYYAAK 478 L Y K Sbjct: 471 EAALAAYQQLK 481 >gi|251782896|ref|YP_002997199.1| deoxyribodipyrimidine photolyase [Streptococcus dysgalactiae subsp. equisimilis GGS_124] gi|242391526|dbj|BAH81985.1| deoxyribodipyrimidine photolyase [Streptococcus dysgalactiae subsp. equisimilis GGS_124] Length = 474 Score = 388 bits (997), Expect = e-106, Method: Composition-based stats. Identities = 165/483 (34%), Positives = 242/483 (50%), Gaps = 24/483 (4%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 V ++W R DLR+ D KAL A S + + VF EQ Q +R + AS+L Sbjct: 2 VSVMWFRRDLRVEDQKALARAIA-SQSPTLCVFQFNQEQLSQPP--SRNQSAVVASVLAF 58 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQR-VTKLFYNRQYEINEVRRDKLLEKRL 127 ++ L +KGI D I + Q T +++N RRD+ + Sbjct: 59 KEELKEKGIDLYVMHG----DLITCFEQLAQQLDQWTDVYFNYDESGFGRRRDQQAAQWF 114 Query: 128 QHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 + + I ++ D L I N + Q YK++TP+ + + + L+ Sbjct: 115 RAKKINIHAYQDHYLHGSQEIKNQSGQYYKIFTPYYRVWQCLPKETPVVVDLSRGNWLSL 174 Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246 + + + + + + + A L F ++ Y RD P+ GTS LS Sbjct: 175 KIPQATLELIETLKDTTFNDVMTV--KEAKERLNHFVDNQLADYDTTRDFPSRCGTSFLS 232 Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP 306 PYL +G++S R + + + SG +L EL WR+FY + P+ Sbjct: 233 PYLRLGMVSIRTVYQAVSQA------PASSGQAVFLKELAWRDFYHMVYVANPNQ-KKLA 285 Query: 307 FIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLL 366 +EW+++ +AWK+G TG+PIIDAAM+QL GWMHNRLRM+ ASFL KDL Sbjct: 286 IQEAFRHLEWDENPAAFKAWKEGQTGYPIIDAAMKQLLATGWMHNRLRMVVASFLTKDLQ 345 Query: 367 VDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIR 426 +DWR+GE YF QL+D D ASN GGWQWAAS G D+VPYFRIFNP QGKRFDP G FIR Sbjct: 346 IDWRLGEAYFQEQLIDYDAASNIGGWQWAASVGTDAVPYFRIFNPVTQGKRFDPDGEFIR 405 Query: 427 HWLPELNNVPTQYIHAPHSWLD------KNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQ 480 +LP L +VP Y++ P + + +YP P+VDH + + +Y AK++ Sbjct: 406 SYLPSLVSVPQTYLYEPWKMPEALQESIACIIGKDYPHPLVDHAEQRKRAIARYEWAKEK 465 Query: 481 SLL 483 + + Sbjct: 466 AQM 468 >gi|134291309|ref|YP_001115078.1| deoxyribodipyrimidine photo-lyase type I [Burkholderia vietnamiensis G4] gi|134134498|gb|ABO58823.1| deoxyribodipyrimidine photo-lyase type I [Burkholderia vietnamiensis G4] Length = 505 Score = 388 bits (997), Expect = e-106, Method: Composition-based stats. Identities = 146/490 (29%), Positives = 229/490 (46%), Gaps = 33/490 (6%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 +VW R+D R+ DN AL A V+ V++ + Q +++ SL ++ Sbjct: 12 PVVVWFRDDQRLADNPALTHALDTGH-PVVCVYVHDAAPKHGRAMGGAQRWWLHESLSKL 70 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128 +L+ G + + E + + + +NR+Y + D +++ L Sbjct: 71 DDALAAHGGSLILLRGNEH----EAITGFAAAIGAAMVVWNRRYAKAQTGTDASIKRDLI 126 Query: 129 HRVICKS-FDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187 R I S F+ +L P ++ ++V++ + +A ++ LP P+ P Sbjct: 127 DRGIAVSTFNGHLLREPWTVTTREGLPFQVFSAYWRAARRDDF-FPPVPLPAPSHIRFFP 185 Query: 188 VTP---SNIPRFFDYPFQAIDPMFPIG--------EQNALHILRKFCKEKVYYYVEQRDI 236 V ++ + Q P + G EQ A L F + + Y RD Sbjct: 186 VPAHATPHVCTLRELELQPSAPDWAGGLRETWQCGEQAASDQLEAFLENSLSDYPTLRDF 245 Query: 237 PAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKP--------KSGAFSWLNELIWR 288 PA + TS+LSPYL G +S RQ W + +L+E+ WR Sbjct: 246 PAARATSRLSPYLRFGNISVRQVWYATLSAADAMRSARIVRGVDSKDGPLSKFLSEIGWR 305 Query: 289 EFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGW 348 EF HL+ + + F + + W D+ L+ W+ G TG+P++DA MR+L GW Sbjct: 306 EFSYHLLYHF-APLHQVNFRRQFDSMPWRDDAKSLRKWQTGRTGYPLVDAGMRELWHTGW 364 Query: 349 MHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRI 408 MHNR+RM+ ASFL K LL+DWR GE +F L+D D ASN WQW + +G D+ PYFRI Sbjct: 365 MHNRVRMVAASFLSKHLLIDWRQGEAWFWDTLVDADEASNPASWQWVSGSGADAAPYFRI 424 Query: 409 FNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKN------DLSLNYPLPIVD 462 FNP +Q ++FDP G + R W+PEL + +HAP + + L +YP+PIVD Sbjct: 425 FNPVLQAQKFDPHGDYTRRWVPELAQLSADTVHAPWAASREQLQRASVTLGRSYPMPIVD 484 Query: 463 HKKACHHTLN 472 H+ A L Sbjct: 485 HQCARARALE 494 >gi|28372347|dbj|BAC56984.1| cryptochrome 2 [Oryza sativa Japonica Group] gi|48716244|dbj|BAD23780.1| cryptochrome 2 [Oryza sativa Japonica Group] gi|215686763|dbj|BAG89613.1| unnamed protein product [Oryza sativa Japonica Group] gi|222623271|gb|EEE57403.1| hypothetical protein OsJ_07585 [Oryza sativa Japonica Group] Length = 651 Score = 388 bits (997), Expect = e-105, Method: Composition-based stats. Identities = 136/480 (28%), Positives = 219/480 (45%), Gaps = 28/480 (5%) Query: 10 HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69 +VW R DLRI DN AL +A D V+ VFI P Q ++ SL + Sbjct: 7 TVVWFRRDLRIDDNPALASAAR--DGAVLPVFIWCPADEGQFYPGRCSRWWLKQSLPHLS 64 Query: 70 KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH 129 +SL G + + ++E L T+L YN Y+ + RD ++K L Sbjct: 65 QSLESLGCPLVLIRAES---TLEALLRCIDSVGATRLVYNHLYDPVSLVRDDKIKKELSA 121 Query: 130 RVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188 I +SF+ +L P I + + + + + + ++ + A P + + G + Sbjct: 122 LGISIQSFNGDLLYEPWEIYDDSGLAFTTFNMYWEKCMELPIDASPSLAPWKLVPVPG-L 180 Query: 189 TPSNIPRFFDYPFQAIDP----------MFPIGEQNALHILRKFCKEKVYYYVEQRDIPA 238 D ++ + G +NA +L +F + Y + Sbjct: 181 ESVRSCSVDDLGLESSKDEESSNALLMRAWSPGWRNAEKMLEEFVSHGLLEYSKHGMKVE 240 Query: 239 IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFS----WLNELIWREFYRHL 294 TS LSPYL G +S R+ + ++ + + + S A ++ + RE+ R+L Sbjct: 241 GATTSLLSPYLHFGEVSVRKVYQLVRMQQIKWENEGTSEAEESIHFFMRSIGLREYSRYL 300 Query: 295 MAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLR 354 +P K + + W D ++W+QG TG+P++DA MR+L GW HNR+R Sbjct: 301 CFNFP-FTHEKSLLGNLKHYPWKVDEERFKSWRQGMTGYPLVDAGMRELWATGWTHNRIR 359 Query: 355 MITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQ 414 +I +SF VK LL+ W G +YF LLD DL S+ GWQ+ + + D R+ NP +Q Sbjct: 360 VIISSFAVKFLLIPWTWGMKYFWDVLLDADLESDILGWQYISGSLPDGHELSRLDNPEVQ 419 Query: 415 GKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWL------DKNDLSLNYPLPIVDHKKACH 468 G+++DP G ++R W+PEL +PT++IH P +L NYP PIVD A Sbjct: 420 GQKYDPDGVYVRTWIPELARMPTEWIHHPWDAPSCILEVAGVELGFNYPKPIVDLHIARE 479 >gi|322412229|gb|EFY03137.1| deoxyribodipyrimidine photolyase [Streptococcus dysgalactiae subsp. dysgalactiae ATCC 27957] Length = 474 Score = 388 bits (997), Expect = e-105, Method: Composition-based stats. Identities = 169/486 (34%), Positives = 243/486 (50%), Gaps = 30/486 (6%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 V ++W R DLRI D KAL A S + + VF +Q Q +R + AS+L Sbjct: 2 VSVMWFRRDLRIEDQKALARAIA-SQSPTLCVFQFNQKQLSQPP--SRNQSAVVASVLAF 58 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQR-VTKLFYNRQYEINEVRRDKLLEKRL 127 ++ L ++GI D I + Q T +++N RRD+ + Sbjct: 59 KEELKERGIDLYVMHG----DLITCFEQLAQQLDQWTDVYFNYDESGFGRRRDQQAAQWF 114 Query: 128 QHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL-- 184 + + I ++ D L I N + + YKV+TP+ + + + L Sbjct: 115 RAKKINIHAYQDHYLHGSQEIKNQSGEYYKVFTPYYRVWQCLPKETPVVVDLSRGNWLSL 174 Query: 185 -TGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS 243 T T I D F + + + A L F ++ Y RD P+ GTS Sbjct: 175 KTPQATLELIETLKDTTFNDVMTV-----KEAKERLNHFVDNQLADYDTTRDFPSRCGTS 229 Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCM 303 LSPYL +G++S R + + + SG +L EL WR+FY + P+ Sbjct: 230 FLSPYLRLGMVSIRTVYQAVSQA------PASSGQAVFLKELAWRDFYHMVYVANPNQ-K 282 Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363 +EW+++ +AWK+G TG+PIIDAAM+QL GWMHNRLRM+ ASFL K Sbjct: 283 KLAIQEAFRHLEWDENPATFKAWKEGQTGYPIIDAAMKQLRATGWMHNRLRMVVASFLTK 342 Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423 DL +DWR+GE YF QL+D D ASN GGWQWAAS G D+VPYFRIFNP QGKRFDP G Sbjct: 343 DLQIDWRLGEAYFQEQLIDYDAASNIGGWQWAASVGTDAVPYFRIFNPVTQGKRFDPDGD 402 Query: 424 FIRHWLPELNNVPTQYIHAPHSWLD------KNDLSLNYPLPIVDHKKACHHTLNQYYAA 477 FIR +LP L +VP +Y++ P + + +YP P+VDH + + +Y A Sbjct: 403 FIRSYLPSLVSVPQKYLYEPWKMPEALQESIACIIGKDYPHPLVDHAEQRKRAIARYEWA 462 Query: 478 KKQSLL 483 K+++ + Sbjct: 463 KEKAQM 468 >gi|172061140|ref|YP_001808792.1| deoxyribodipyrimidine photo-lyase [Burkholderia ambifaria MC40-6] gi|171993657|gb|ACB64576.1| Deoxyribodipyrimidine photo-lyase [Burkholderia ambifaria MC40-6] Length = 500 Score = 388 bits (996), Expect = e-105, Method: Composition-based stats. Identities = 158/496 (31%), Positives = 241/496 (48%), Gaps = 23/496 (4%) Query: 1 MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHF 60 M A ++++ +VW R+DLR+TD AL A S ++ V++ + + Sbjct: 1 MSAKSSVAPAIVWFRDDLRVTDQPALTRAVA-SGRPLVCVYVDDTGDGAGRALGGAARWW 59 Query: 61 IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120 ++ +L + +L++ G + D+ ++ +++NR+Y + D Sbjct: 60 LHGALAALDAALARHGGRLLLLRG----DAQREIERVVHDTGAAAVYWNRRYAQPQRDAD 115 Query: 121 KLLEKRLQHRV-ICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQ-NLVQADLRSLP 178 L+ L+ R +S + S+L P ++ A ++V+T + +A+ + LV A L Sbjct: 116 AALKASLKARGLEVESSNGSLLNEPWEVMTGAGTPFQVFTAYWRAVRRDRLVAAPLPEPE 175 Query: 179 VPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIG---------EQNALHILRKFCKEKVYY 229 A + P + G E A L F E + Sbjct: 176 RIAFHPWPAAVRERALALNTLALRPHAPDWAGGLRDAWPAPDEAGAHARLDAFVHESLAG 235 Query: 230 YVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWRE 289 Y + RD P TS+LSP+L G +SPRQ W+ ++ +GA +L+EL WRE Sbjct: 236 YADTRDRPGESATSRLSPFLRFGNVSPRQVWHAVQGAAQAGGAACAAGAEKFLSELGWRE 295 Query: 290 FYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWM 349 F L+ +P++ F + + W D L+AW++G TG+P++DA MR+L T GWM Sbjct: 296 FSHVLLYHFPALATDN-FRAQFDAMPWRDDPAALRAWQRGLTGYPLVDAGMRELWTTGWM 354 Query: 350 HNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIF 409 HNR RM+ ASFLVK LL+DWR GE +F L+D D A+N WQW A G D+ PYFRIF Sbjct: 355 HNRARMVVASFLVKHLLIDWRAGERWFHDTLVDADAANNPANWQWVAGCGADAAPYFRIF 414 Query: 410 NPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKN------DLSLNYPLPIVDH 463 NP QG++FDPQG ++R W+PEL + IHAP L L+YP PIVDH Sbjct: 415 NPVTQGRKFDPQGAYVRRWVPELAGLDAAAIHAPWDASAAQLAAAGVRLGLDYPAPIVDH 474 Query: 464 KKACHHTLNQYYAAKK 479 A L+ K Sbjct: 475 DGARRRALDALATLPK 490 >gi|322369279|ref|ZP_08043844.1| deoxyribodipyrimidine photo-lyase [Haladaptatus paucihalophilus DX253] gi|320551011|gb|EFW92660.1| deoxyribodipyrimidine photo-lyase [Haladaptatus paucihalophilus DX253] Length = 464 Score = 388 bits (996), Expect = e-105, Method: Composition-based stats. Identities = 158/475 (33%), Positives = 240/475 (50%), Gaps = 17/475 (3%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 +H+ W R DLR+ DN+AL + V+ VF+ + + F+ ++L + Sbjct: 1 MHVHWHRRDLRVADNRALSR-----GSPVLPVFVFDGAVL--SHAAPPRVSFMLSALESL 53 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128 ++S ++G + E + ++ +NR Y RD + L Sbjct: 54 RESYRERGGDLLVLRGDPR----EEIPRIAAAADADRVVWNRDYSGLAKERDADVRDALS 109 Query: 129 HRVICKS-FDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187 I + F D++L PGSI + Y VYT F K A + + Sbjct: 110 DAGIERRAFHDALLHTPGSITTNQGDYYSVYTYFWKKWRDGAKDAPFDAPDEIVVPDEVV 169 Query: 188 VTPSNIPRFFDYPFQAIDPMFPI-GEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246 IP D F+ + P G + A +L FC++ VY Y + RD PA + TS+LS Sbjct: 170 EEGIEIPTLADLGFEDPEAEIPPAGTEAARDLLSAFCEDDVYRYDKARDYPARESTSRLS 229 Query: 247 PYLSIGVLSPRQCWNRL-KEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305 P+L G + R+ W + + + +L WREFY H++ PSV + Sbjct: 230 PHLKFGTVGIREVWEATERAKDAAESEDAAESVEEFQGQLAWREFYAHVLDDTPSVVVEN 289 Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365 + + I W D ++AWK G TG+PI+DA MRQL W+HNR+RMI ASFL KDL Sbjct: 290 -YKDYQYDIAWRDDPDGVRAWKDGETGYPIVDAGMRQLREEAWVHNRVRMIIASFLTKDL 348 Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425 LVDWR G +++ +L+D D A++NGGWQWAASTG D+ PYFR+FNPT QG+RFDP +I Sbjct: 349 LVDWREGYDWYRRKLVDHDTANDNGGWQWAASTGTDAQPYFRVFNPTTQGERFDPDAEYI 408 Query: 426 RHWLPELNNVPTQYIHAPHSW--LDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478 + ++PEL +VP + +H ++ +L+ +YP PIVDH + + + A+ Sbjct: 409 KRFVPELADVPPKTVHEWTELDPDERRELAPDYPDPIVDHSERREMAITMFENAR 463 >gi|323127700|gb|ADX24997.1| deoxyribodipyrimidine photolyase [Streptococcus dysgalactiae subsp. equisimilis ATCC 12394] Length = 474 Score = 387 bits (995), Expect = e-105, Method: Composition-based stats. Identities = 165/483 (34%), Positives = 242/483 (50%), Gaps = 24/483 (4%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 V ++W R DLR+ D KAL A S + + VF EQ Q +R + AS+L Sbjct: 2 VSVMWFRRDLRVEDQKALARAIA-SQSPTLCVFQFNQEQLSQPP--SRNQSAVVASVLAF 58 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQR-VTKLFYNRQYEINEVRRDKLLEKRL 127 ++ L +KGI D I + Q T +++N RRD+ + Sbjct: 59 KEELKEKGIDLYVMHG----DLITCFEQLAQQLDQWTDVYFNYDESGFGRRRDQQAAQWF 114 Query: 128 QHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 + + I ++ D L I N + Q YK++TP+ + + + L+ Sbjct: 115 RAKKINIHAYQDHYLHGSQEIKNQSGQYYKIFTPYYRVWQCLPKETPVVVDLSRGNWLSL 174 Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246 + + + + + + + A L F ++ Y RD P+ GTS LS Sbjct: 175 KIPQATLELIETLKDTTFNDVMTV--KEAKERLNHFVDNQLADYDTTRDFPSRCGTSFLS 232 Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP 306 PYL +G++S R + + + SG +L EL WR+FY + P+ Sbjct: 233 PYLRLGMVSIRTVYQAVSQA------PASSGQAVFLKELAWRDFYHMVYVANPNQ-KKLA 285 Query: 307 FIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLL 366 +EW+++ +AWK+G TG+PIIDAAM+QL GWMHNRLRM+ ASFL KDL Sbjct: 286 IQEAFRHLEWDENPAAFKAWKEGQTGYPIIDAAMKQLLATGWMHNRLRMVVASFLTKDLQ 345 Query: 367 VDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIR 426 +DWR+GE YF QL+D D ASN GGWQWAAS G D+VPYFRIFNP QGKRFDP G FIR Sbjct: 346 IDWRLGEAYFQEQLIDYDAASNIGGWQWAASVGTDAVPYFRIFNPVTQGKRFDPDGEFIR 405 Query: 427 HWLPELNNVPTQYIHAPHSWLD------KNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQ 480 +LP L +VP Y++ P + + +YP P+VDH + + +Y AK++ Sbjct: 406 SYLPSLVSVPQTYLYEPWKMPEALQESIACIIGEDYPHPLVDHAEQRKRAIARYEWAKEK 465 Query: 481 SLL 483 + + Sbjct: 466 AQM 468 >gi|86141641|ref|ZP_01060187.1| deoxyribodipyrimidine photolyase-class I [Leeuwenhoekiella blandensis MED217] gi|85832200|gb|EAQ50655.1| deoxyribodipyrimidine photolyase-class I [Leeuwenhoekiella blandensis MED217] Length = 434 Score = 387 bits (995), Expect = e-105, Method: Composition-based stats. Identities = 145/474 (30%), Positives = 225/474 (47%), Gaps = 48/474 (10%) Query: 8 SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67 +V++ W R DLR+ DN A + V+ +FI E + + FI+ +L + Sbjct: 3 TVNIFWFRRDLRLDDNVGFLEALK-GEHPVLPIFIFDKEILNELPEDDARVTFIFETLQK 61 Query: 68 VQKSLSQK-GIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 ++ L +K G + + + L+ Y +V +F N YE + RDK ++K Sbjct: 62 MRDELQEKHGSSIALYHGKSETIWKQLLEDY----KVDTVFTNHDYEPYALERDKKIKKL 117 Query: 127 LQHR-VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185 L+ + V ++F D V+ ++ Y VYTP++ + + + L Sbjct: 118 LEDQEVSFETFKDQVIFEKDEVVKGDGDPYVVYTPYKNKWQEVFDADKHLKIHYTSQYLE 177 Query: 186 GPVTPSNIPR--FFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS 243 + S +P D F+ P E + Y + R+ PA GTS Sbjct: 178 NLIEHSRLPNISLSDMGFKKSSIEIPDYEVT---------PTLIQNYEDTRNFPAQDGTS 228 Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCM 303 L P+L G +S R+ + E + + +ELIWREF+ ++ YP + Sbjct: 229 HLGPHLRFGTVSVRKMVKKAIAEKNTV----------FWSELIWREFFMQILYHYPE-TV 277 Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363 F ++IEW + + WK+G TG+ ++DA MRQLN G+MHNR+RM+ ASFL K Sbjct: 278 NNAFRSKYDRIEWRNNKEEFEKWKKGETGYLLVDAGMRQLNKTGYMHNRVRMLVASFLCK 337 Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423 LL+DWR GE YF +LLD + +SN G WQWAA +G D+ PYFRIFNP Q +FD Sbjct: 338 HLLIDWRWGEAYFAEKLLDYEQSSNVGNWQWAAGSGVDAAPYFRIFNPMTQVDKFDKDKK 397 Query: 424 FIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477 +I+ ++PE + + +YP +VDHK+A L Y AA Sbjct: 398 YIKEFVPEFD-------------------TDDYPEKMVDHKEARERCLETYKAA 432 >gi|170017540|ref|YP_001728459.1| deoxyribodipyrimidine photolyase [Leuconostoc citreum KM20] gi|169804397|gb|ACA83015.1| Deoxyribodipyrimidine photolyase [Leuconostoc citreum KM20] Length = 478 Score = 387 bits (995), Expect = e-105, Method: Composition-based stats. Identities = 175/485 (36%), Positives = 242/485 (49%), Gaps = 27/485 (5%) Query: 8 SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67 V +VW+R D RI DN AL AA NSD+ V+ VFI PEQ S QS F +AS Sbjct: 3 KVSIVWIRRDFRIQDNLALAAATENSDS-VLLVFIVDPEQIETT-ASLNQSAF-FASAKA 59 Query: 68 VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127 Q +L+ + I + + + + ++ L++N +RD+ + Sbjct: 60 FQANLANENIHLLVLKGTPESQFEKLTAALP---EISDLYFNFDERGYGRQRDQQVAHHC 116 Query: 128 QH--RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLR----SLPVPA 181 Q + ++ D L I Y+++TP+ K I ++ SL Sbjct: 117 QTTLGLKTHAYIDYNLHSANEIKKADGAGYQIFTPYFKRWITLPKPTPVKASVTSLQGKQ 176 Query: 182 IRLTGPVTPSNIPRFFDYPFQAIDPMF--PIGEQNALHILRKFCKEKVYYYVEQRDIPAI 239 + P+ + D +GE AL L+ F + + Y QRD+P + Sbjct: 177 MANIEPLHLHQEGLLTSLINEKHDKQLVGQVGEAKALQTLKDFIQSHLSEYDTQRDLPFL 236 Query: 240 QGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYP 299 TS LS YL G ++ R + + E G +++ EL WR++Y + A P Sbjct: 237 DATSHLSRYLRTGEIAIRTIYQAVINE------PESEGQQTFIKELAWRDYYNMIYAMNP 290 Query: 300 SVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITAS 359 + P +KI W + + W+ G TGFPI+DAAMRQLN GWMHNRLRMI AS Sbjct: 291 QQNT-QSLRPEFQKIAWRNNHNDFLLWQTGQTGFPIVDAAMRQLNQTGWMHNRLRMIVAS 349 Query: 360 FLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFD 419 FL KDLL+DWR GE+YF QLLD D ASN GGWQWAASTG DSVPYFRIFNPT Q ++FD Sbjct: 350 FLTKDLLIDWRWGEQYFHDQLLDYDPASNIGGWQWAASTGTDSVPYFRIFNPTRQSQKFD 409 Query: 420 PQGTFIRHWLPELNNVPTQYIHAPHSWLDKND------LSLNYPLPIVDHKKACHHTLNQ 473 P G FI+ ++PEL+ + IH P D L +YP P+V HK+A + Sbjct: 410 PDGKFIKQFVPELSQITNDKIHEPQLLTDLEQKEFQVTLDKDYPKPMVTHKQARLRAIEV 469 Query: 474 YYAAK 478 Y +K Sbjct: 470 YEQSK 474 >gi|56751401|ref|YP_172102.1| DNA photolyase [Synechococcus elongatus PCC 6301] gi|118595452|sp|P05327|PHR_SYNP6 RecName: Full=Deoxyribodipyrimidine photo-lyase; AltName: Full=DNA photolyase; AltName: Full=Photoreactivating enzyme gi|56686360|dbj|BAD79582.1| DNA photolyase [Synechococcus elongatus PCC 6301] Length = 484 Score = 387 bits (995), Expect = e-105, Method: Composition-based stats. Identities = 167/479 (34%), Positives = 230/479 (48%), Gaps = 23/479 (4%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 L W R DLR++DN L AA S A++I +F P+ + ++ + ++ L ++Q+ Sbjct: 6 LFWHRRDLRLSDNIGLAAARAQS-AQLIGLFCLDPQILQSADMAPARVAYLQGCLQELQQ 64 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130 Q G Q D + Q + +++N+ E RD + L+ Sbjct: 65 RYQQAGSRLLLLQG----DPQHLIPQLAQQLQAEAVYWNQDIEPYGRDRDGQVAAALKTA 120 Query: 131 VI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQAD------LRSLPVPAIR 183 I D +L P IL+ + Y VY PF K L L + Sbjct: 121 GIRAVQLWDQLLHSPDQILSGSGNPYSVYGPFWKNWQAQPKPTPVATPTELVDLSPEQLT 180 Query: 184 LTGPVTPSNIPRFFDYPFQAIDPMFP--IGEQNALHILRKFCKEKVYYYVEQRDIPAIQG 241 P+ S +P F D FP GE A+ L++FC + Y QR+ PA G Sbjct: 181 AIAPLLLSELPTLKQLGFDW-DGGFPVEPGETAAIARLQEFCDRAIADYDPQRNFPAEAG 239 Query: 242 TSQLSPYLSIGVLSPRQCWNRLKEEFV-DLLIKPKSGAFSWLNELIWREFYRHLMAFYPS 300 TS LSP L G + RQ W + ++ W EL WREFY+H + +PS Sbjct: 240 TSGLSPALKFGAIGIRQAWRAASAAHALSRSDEARNSIRVWQQELAWREFYQHALYHFPS 299 Query: 301 VCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASF 360 + G P+ ++ W L AW Q TG+PI+DAAMRQL GWMHNR MI ASF Sbjct: 300 LADG-PYRSLWQQFPWENREALFTAWTQAQTGYPIVDAAMRQLTETGWMHNRCWMIVASF 358 Query: 361 LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDP 420 L KDL++DWR GE++FM L+DGDLA+NNGGWQW+AS+G D P RIFNP Q K+FD Sbjct: 359 LTKDLIIDWRRGEQFFMQHLVDGDLAANNGGWQWSASSGMDPKP-LRIFNPASQAKKFDA 417 Query: 421 QGTFIRHWLPELNNV-PTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478 T+I+ WLPEL +V P I + + + YP PIV+H Y K Sbjct: 418 TATYIKRWLPELRHVHPKDLISGEITPIGRR----GYPAPIVNHNLRQKQFKALYNQLK 472 >gi|302664116|ref|XP_003023694.1| hypothetical protein TRV_02203 [Trichophyton verrucosum HKI 0517] gi|291187700|gb|EFE43076.1| hypothetical protein TRV_02203 [Trichophyton verrucosum HKI 0517] Length = 565 Score = 387 bits (994), Expect = e-105, Method: Composition-based stats. Identities = 170/486 (34%), Positives = 237/486 (48%), Gaps = 43/486 (8%) Query: 11 LVWLRNDLRITDNKALYAA---CHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67 + W + DLR+ DN++L+ A + + +I ++I +PE H S + FI +L Sbjct: 100 VHWFKQDLRLQDNRSLHRAYSFARDHNIPLICLYIFSPEDLTAHLCSPPRVDFILRTLAT 159 Query: 68 VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127 ++ LS+K I + C LF N +YE++E+RR+ L + Sbjct: 160 LKSELSKKDIPLYMESMERRKRIPIRIVELCKTWGANHLFANIEYEVDELRREAKLTRLC 219 Query: 128 QHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQAD--LRSLPVPAIRL 184 + I + DD+ ++ PG + + Y VYTP+ ++ + L Q L + PA+ Sbjct: 220 TTQGIRFDTEDDTCVVAPGELTTQQGKQYAVYTPWYRSWVAYLKQHPENLELVDAPAVNA 279 Query: 185 TGP------------VTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVE 232 N + + + M+P GEQ A LR+F EK Y Sbjct: 280 GDARKHFEDLFDSAVPIAPNQMKLSEAEQERFKKMYPEGEQEATRRLREFLSEKGKQYRS 339 Query: 233 QRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYR 292 +RD + Q TS LSPY S G LS R + L+I S Sbjct: 340 KRDFMSSQITSVLSPYFSCGALSARTAPFIEAMKLCGLVITDVSS--------------- 384 Query: 293 HLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNR 352 M K F P +EW DS AW +G TGFPI+DAAMRQL WMHNR Sbjct: 385 ---------SMNKCFKPEFTDLEWGYDSTQFDAWCEGKTGFPIVDAAMRQLKHCAWMHNR 435 Query: 353 LRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPT 412 RMI +SFL KDLL+DWR GE++FM L+DGD ASN+GGW + +STG D PYFRIFNP Sbjct: 436 TRMIVSSFLSKDLLIDWRRGEQFFMLHLIDGDFASNHGGWGFGSSTGVDPQPYFRIFNPL 495 Query: 413 IQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLN-YPLPIVDHKKACHHTL 471 Q +RFDP G +IRHW+PEL +V IH P+ + N YP PIV+H ++ L Sbjct: 496 RQSERFDPDGDYIRHWVPELRDVEGSAIHDPYGRGAEEIAEKNGYPRPIVNHTESRERAL 555 Query: 472 NQYYAA 477 +Y A Sbjct: 556 EKYKKA 561 >gi|163756034|ref|ZP_02163150.1| deoxyribodipyrimidine photolyase-class I [Kordia algicida OT-1] gi|161323908|gb|EDP95241.1| deoxyribodipyrimidine photolyase-class I [Kordia algicida OT-1] Length = 433 Score = 387 bits (993), Expect = e-105, Method: Composition-based stats. Identities = 156/468 (33%), Positives = 224/468 (47%), Gaps = 47/468 (10%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 L W R DLRI DN LY A NS KVI +FI + + + FIY L ++ Sbjct: 7 LFWHRRDLRIEDNIGLYHAL-NSGKKVIPLFIFDSDILEKLPKDDARVTFIYEELEKINT 65 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ-H 129 +L +E L+ + ++ ++ N YE + RDK + + L Sbjct: 66 TLQSHDASILVKHGKP----LEVLEEIIGKHEISAVYTNHDYEPYAIARDKEVGELLASK 121 Query: 130 RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189 + K++ D V+ ++ Y +YTP+ K + L + D S+ + Sbjct: 122 NIEFKTYKDQVIFERNEVVKADGDPYIIYTPYSKKWLDKLTKNDYTSVDCASYYKNYAKK 181 Query: 190 PSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKV-YYYVEQRDIPAIQGTSQLSPY 248 N P D F A + +L E + Y + R+ PAI+GTS+LSP+ Sbjct: 182 SFNFPSLKDIGFTASS----------IKVLPYTMAENMIDNYEDTRNFPAIEGTSRLSPH 231 Query: 249 LSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFI 308 L G +S R+C + ++ +L EL+WREF+ ++ +P + F Sbjct: 232 LRFGTISVRKCVQNGLQSENNV----------FLKELVWREFFMQILWHFPK-SVTNNFK 280 Query: 309 PWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVD 368 + I+W D +AW +G TG+P++DA MR+LN G+MHNR+RMITASFL K LL+D Sbjct: 281 SKYDGIKWRNDEDEYKAWCEGKTGYPLVDAGMRELNESGYMHNRVRMITASFLCKHLLID 340 Query: 369 WRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHW 428 W+ GE YF +LLD DLA N G WQW A TG DS PYFRIFNPT Q K+FD T+I W Sbjct: 341 WKWGEAYFAKKLLDFDLAQNVGNWQWVAGTGCDSSPYFRIFNPTSQIKKFDKDHTYINKW 400 Query: 429 LPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYA 476 + L YP PIV+HK A L+ Y + Sbjct: 401 -------------------ASDYQELTYPSPIVEHKFARERCLSTYKS 429 >gi|120436173|ref|YP_861859.1| deoxyribodipyrimidine photo-lyase [Gramella forsetii KT0803] gi|117578323|emb|CAL66792.1| deoxyribodipyrimidine photo-lyase [Gramella forsetii KT0803] Length = 435 Score = 387 bits (993), Expect = e-105, Method: Composition-based stats. Identities = 146/475 (30%), Positives = 223/475 (46%), Gaps = 47/475 (9%) Query: 6 AMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASL 65 + V++ W R DLR+ DN L AA D V+ +FI E + + FI+ L Sbjct: 2 SKKVNIFWFRRDLRLDDNAGLKAALQ-GDLPVLPIFIFDHEILEKLPEDDARVTFIFEEL 60 Query: 66 LQVQKSLSQ-KGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLE 124 +++ +L + G + + + + K+F NR YE RD+ + Sbjct: 61 QEMRSTLQEDHGSSIAI----FYRTPEKVFKNLISDYEIEKVFTNRDYEPYAKERDQKIA 116 Query: 125 KRLQ-HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLR-SLPVPAI 182 K L + + + F D V+ ++ Y VYTP++ + + DL + Sbjct: 117 KILSGNDIEFEDFKDQVIFEKDEVVKKDGDPYVVYTPYKNLWREKFSKIDLDFHYTTRYM 176 Query: 183 RLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGT 242 + D F+ P K + Y ++RD PA++GT Sbjct: 177 DNFYQNSRLPNLSLADIGFKKSSLKVPD---------YKVTPGLIKDYKDKRDYPAVEGT 227 Query: 243 SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVC 302 S+L P+L G +S RQ EE ++L+EL+WREF+ ++ +P Sbjct: 228 SRLGPHLRFGTVSVRQMIRDADEE----------SNKTFLDELVWREFFMQILFHFPDTV 277 Query: 303 MGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLV 362 + F ++IEW + + WKQG TG+P++DA MRQLN G+MHNR+RM+ SFL Sbjct: 278 T-EAFKKKYDRIEWRNNKDEFELWKQGKTGYPLVDAGMRQLNESGFMHNRIRMLVGSFLC 336 Query: 363 KDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQG 422 K LL+DWR GE YF +LLD +++SN G WQW A +G D+ PYFRIFNPT Q ++FD Sbjct: 337 KHLLIDWRWGEAYFAEKLLDYEMSSNVGNWQWVAGSGVDAAPYFRIFNPTTQIEKFDKDK 396 Query: 423 TFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477 +I+ W+PE + +YP +VDHK+A L Y A Sbjct: 397 EYIKEWVPEFG-------------------TDDYPEKMVDHKEARERALKTYKEA 432 >gi|67925725|ref|ZP_00519034.1| Deoxyribodipyrimidine photolyase [Crocosphaera watsonii WH 8501] gi|67852431|gb|EAM47881.1| Deoxyribodipyrimidine photolyase [Crocosphaera watsonii WH 8501] Length = 486 Score = 387 bits (993), Expect = e-105, Method: Composition-based stats. Identities = 138/490 (28%), Positives = 230/490 (46%), Gaps = 31/490 (6%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQ-----HGISARQSHFIYASL 65 L+W RNDLRI D++ LY A A +I + Q++ + F+ S+ Sbjct: 7 LIWYRNDLRIHDHEPLYQAIKQG-ALIIPFYCFDIRQFKTTSFGFPKTGNFRGQFLLESV 65 Query: 66 LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125 ++KSL G Q + + Q + ++++ + E + +EK Sbjct: 66 TDLKKSLQDLGSNLIIRQG----YPEKIIPELIKQLEIDAVYFHEEVTSEETDIENTVEK 121 Query: 126 RLQH-RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL 184 L+ V K F + L + ++ +V+T FRK + +N + P +R Sbjct: 122 ALKPLNVTFKGFWGATLYHWDDLPFEVSKLPEVFTSFRKKVEKNSTVNPILISPR-KLRS 180 Query: 185 TGPVTPSNIPRFFDYPFQAID------PMFPIGEQNALHILRKFCKEKV--YYYVEQRD- 235 + N+P + + F GE + L + E+ Y E R+ Sbjct: 181 LPDIEVGNVPSLEELELEKPKYDSRGVLEFKGGETEGIQRLNNYFWERNCLKEYKETRNG 240 Query: 236 IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLM 295 + +S+ SP+L+ G LSPR + + +++ + IK S + + EL+WR+++R + Sbjct: 241 MLGADYSSKFSPWLANGCLSPRYIYEEV-QKYEEKRIKNNS-TYWLIFELLWRDYFRFIS 298 Query: 296 AFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRM 355 A + + + + + I W +D + W++G TG+P++D MR+L G+M NR R Sbjct: 299 AKHGNKIFYQSGLQGVD-IPWKEDQERFKLWQEGNTGYPLVDGNMRELAATGFMSNRGRQ 357 Query: 356 ITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQG 415 ASFL K+L ++W +G E+F S L+D D+ SN G W + A GND+ FR FN Q Sbjct: 358 NVASFLTKNLGINWIMGAEWFESLLIDYDVCSNYGNWNYTAGVGNDARG-FRYFNIPKQS 416 Query: 416 KRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND------LSLNYPLPIVDHKKACHH 469 K +DP+G +I+HWLPEL +P Q IH P + + +NYP P+VD K+ Sbjct: 417 KDYDPKGEYIKHWLPELKMIPGQKIHEPWKLSQEEQKRYNVRIGVNYPRPVVDFFKSVKA 476 Query: 470 TLNQYYAAKK 479 Y AA K Sbjct: 477 NEKMYNAAIK 486 >gi|255581443|ref|XP_002531529.1| DNA photolyase, putative [Ricinus communis] gi|223528846|gb|EEF30848.1| DNA photolyase, putative [Ricinus communis] Length = 640 Score = 386 bits (992), Expect = e-105, Method: Composition-based stats. Identities = 133/492 (27%), Positives = 227/492 (46%), Gaps = 26/492 (5%) Query: 10 HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69 +VW R DLRI DN AL AA D ++ VFI P++ Q ++ SL + Sbjct: 6 TIVWFRRDLRIEDNPALAAAAR--DGCILPVFIWCPQEEGQFYPGRVSRWWLKQSLAHLG 63 Query: 70 KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH 129 SL G + + ++ L TK+ +NR Y+ + RD ++++L Sbjct: 64 HSLKSLGAELLLIKTHS---TLAALLDCVNVIGATKVVFNRLYDPVSLVRDHNIKEKLVE 120 Query: 130 RVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188 I +S++ +L P I + + + + + + ++ P + V Sbjct: 121 LGISIQSYNGDLLYEPWEIYDESGHAFMTFDQYWDKCLHMQMEPVSHLPPWRLVPAAETV 180 Query: 189 TPSNIPRF--FDYPFQAIDPM----FPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGT 242 ++ D ++ + + + G NA L +F ++ + Y ++R T Sbjct: 181 NSCSVEELGLEDEAEKSSNSLLGRAWSPGWSNADKALAEFVEQHLVNYSKKRLEVGGNST 240 Query: 243 SQLSPYLSIGVLSPRQCWNRLKEEF----VDLLIKPKSGAFSWLNELIWREFYRHLMAFY 298 S LSPYL G LS R+ ++ ++ + + + +L + RE+ R+L + Sbjct: 241 SLLSPYLHFGELSVRKVFHCVQMKQLLWAKEENSVGRESVTLFLKSIGLREYSRYLCFNF 300 Query: 299 PSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITA 358 P + F+ WN + +AW+QG TG+P++DA MR+L GW+HN++R+I + Sbjct: 301 P-YTHERSFLSNLRLFPWNANQAHFKAWRQGRTGYPLVDAGMRELWATGWIHNKIRVIVS 359 Query: 359 SFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRF 418 SF VK LL+ WR G +YF LLD D+ S+ GWQ+ + D R+ +P IQG +F Sbjct: 360 SFAVKALLLPWRWGMKYFWDTLLDADMESDILGWQYISGGLPDGHELERLDSPEIQGSKF 419 Query: 419 DPQGTFIRHWLPELNNVPTQYIHAPHSWLDK------NDLSLNYPLPIVDHKKACHH--- 469 D G ++R WLPEL +PT++IH P +L NYP PIV+ A Sbjct: 420 DADGEYVRQWLPELARMPTEWIHHPWDAPLAVLRAAGVELGQNYPKPIVELDLARERLTE 479 Query: 470 TLNQYYAAKKQS 481 + + + ++ Sbjct: 480 AIFRMWETAARA 491 >gi|224063235|ref|XP_002301054.1| predicted protein [Populus trichocarpa] gi|222842780|gb|EEE80327.1| predicted protein [Populus trichocarpa] Length = 681 Score = 386 bits (992), Expect = e-105, Method: Composition-based stats. Identities = 141/491 (28%), Positives = 224/491 (45%), Gaps = 25/491 (5%) Query: 5 TAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYAS 64 + +VW R DLR+ DN AL A V+AVF+ PE+ + ++ S Sbjct: 2 SGGGCSIVWFRRDLRVEDNPALAAGVRAG--AVVAVFVWAPEEEGHYYPGRVSRWWLKQS 59 Query: 65 LLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLE 124 L + SL G + + DS+ L T+LF+N Y+ + RD + Sbjct: 60 LAHLDSSLRSLGTSLVTKRST---DSVSTLLEVIKSTGATQLFFNHLYDPLSLVRDHRAK 116 Query: 125 KRL-QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIR 183 + L + +SF+ +L P + + + + + F + + LP I Sbjct: 117 EVLTAQGIAVRSFNADLLYEPWDVNDAQGRPFTTFATFWDRCLSMPFDPEAPLLPPKRII 176 Query: 184 L-TGPVTPSNIPRFFDYPFQAIDPM----FPIGEQNALHILRKFCKEKVYYYVEQRDIPA 238 PS + F D + + + + G NA L F + Y + R Sbjct: 177 SGDASRCPSEMLVFEDELEKGSNALLARAWSPGWSNADRALTTFINGPLIEYSKNRRKAD 236 Query: 239 IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFS----WLNELIWREFYRHL 294 TS LSP+L G +S R+ ++ ++ + V + +L + RE+ R+L Sbjct: 237 SATTSFLSPHLHFGEVSVRKVFHLVRIKQVLWANEGNKAGEESVNLFLKSIGLREYSRYL 296 Query: 295 MAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLR 354 +P +P + + W D +AW+QG TG+P++DA MR+L GW+H+R+R Sbjct: 297 SFNHP-YSHERPLLGHLKFFPWVVDGGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIR 355 Query: 355 MITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQ 414 ++ ASF VK L + WR G +YF LLD DL S+ GWQ+ T D + RI NP + Sbjct: 356 VVVASFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYITGTLPDGREFDRIDNPQFE 415 Query: 415 GKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKN------DLSLNYPLPIV--DHKKA 466 G +FDP G ++R WLPEL +PT++IH P + + +L NYPLPIV D K Sbjct: 416 GYKFDPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPLPIVGIDAAKV 475 Query: 467 C-HHTLNQYYA 476 L++ + Sbjct: 476 RLEEALSEMWQ 486 >gi|220913214|ref|YP_002488523.1| deoxyribodipyrimidine photo-lyase [Arthrobacter chlorophenolicus A6] gi|219860092|gb|ACL40434.1| Deoxyribodipyrimidine photo-lyase [Arthrobacter chlorophenolicus A6] Length = 475 Score = 386 bits (992), Expect = e-105, Method: Composition-based stats. Identities = 160/481 (33%), Positives = 237/481 (49%), Gaps = 25/481 (5%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 LVWLR+DLR+ DN AL A H A + V++ E + +++ SL + Sbjct: 7 TSLVWLRDDLRLDDNPALSEAAHLG-APMTVVYVLDEESPGVRPLGGASRWWLHHSLAAL 65 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128 L KG + + + + S Q LF+NR+Y E D L++ Sbjct: 66 AAVLEAKGSRLVLRRGK----AADVISSLAAQTHAGHLFWNRRYGGPERDIDAGLKEWAA 121 Query: 129 -HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADL----RSLPVPAIR 183 + + SF ++L P +I A YKVY+PF +A + D + LP PA Sbjct: 122 GNGIEASSFQANLLFEPWTIKTGAGGPYKVYSPFWRACLAAGDIRDPLDIPKDLPEPAAS 181 Query: 184 LTGPVTPSNIPRFFDYPFQ-----AIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPA 238 G ++ + P + + GE+ A+ L F + Y R+IP Sbjct: 182 GRGLPASDSLGSWKLLPTSPDWSGGLAETWVPGEKGAVDRLTDFLDGPIEDYGTGRNIPG 241 Query: 239 IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFY 298 +GTS+LSPYL G +SP + W ++ + + + +EL WREF HL+ Sbjct: 242 TEGTSRLSPYLRFGEVSPFRVWREIRRRHPRQVP---ADVGIFRSELGWREFNWHLLYHN 298 Query: 299 PSVCMGKPFIPWTEKIEWNK-DSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMIT 357 P + + F P EK EW L AW+QG TG+P++DA MRQL GWMHNR+RM Sbjct: 299 PELAT-RSFRPDFEKFEWASLSRKELAAWQQGRTGYPLVDAGMRQLWQTGWMHNRVRMAA 357 Query: 358 ASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKR 417 ASFLVK+LL DWR+GE++F L+D D A+N WQW A +G D+ PY+RIFNP Q K+ Sbjct: 358 ASFLVKNLLTDWRVGEQWFWDTLVDADAANNPANWQWVAGSGADASPYYRIFNPVTQSKK 417 Query: 418 FDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477 FD G ++R ++PE+ + + IH P + YP P+V+ ++ L+ Y Sbjct: 418 FDAGGDYLRRFIPEIAGLEGKAIHEPWTAE-----PDGYPQPLVELPESRERALDAYQKL 472 Query: 478 K 478 K Sbjct: 473 K 473 >gi|115352268|ref|YP_774107.1| deoxyribodipyrimidine photo-lyase [Burkholderia ambifaria AMMD] gi|115282256|gb|ABI87773.1| deoxyribodipyrimidine photo-lyase type I [Burkholderia ambifaria AMMD] Length = 525 Score = 386 bits (992), Expect = e-105, Method: Composition-based stats. Identities = 156/495 (31%), Positives = 241/495 (48%), Gaps = 23/495 (4%) Query: 2 KATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFI 61 A ++++ +VW R+DLR+TD AL A S ++ V++ + ++ Sbjct: 27 SAKSSVAPAVVWFRDDLRVTDQPALTRAVA-SGRPLVCVYVDDTGDGAGRALGGAARWWL 85 Query: 62 YASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDK 121 + +L + +L++ G + D+ ++ +++NR+Y + D Sbjct: 86 HGALAALDAALARHGGHLLLLRG----DAQREIERIVHDTGAAAVYWNRRYAQPQRDADA 141 Query: 122 LLEKRLQHRV-ICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRS---- 176 L+ L+ R +S + S+L P ++ A ++V+T + +A+ ++ Sbjct: 142 ALKASLKARGLEVESSNGSLLNEPWEVMTGAGTPFQVFTAYWRAVRRDRTVMAPLPEPER 201 Query: 177 ---LPVPAI---RLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYY 230 P PA R + P D+ D E A L F + Y Sbjct: 202 IAFHPWPAAVRERALALDALALRPHAPDWAGGLRDEWPAPDEAGAHARLDAFVHASLAGY 261 Query: 231 VEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREF 290 + RD P TS+LSP+L G +SPRQ W+ ++ +GA +L+EL WREF Sbjct: 262 ADTRDRPGEPATSRLSPFLRFGNVSPRQVWHAVQGATQAGGAACAAGAEKFLSELGWREF 321 Query: 291 YRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMH 350 L+ +P++ F + + W D L+AW++G TG+P++DA MR+L T GWMH Sbjct: 322 SHVLLYHFPALATDN-FRAQFDAMPWRDDPAALRAWQRGLTGYPLVDAGMRELWTTGWMH 380 Query: 351 NRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFN 410 NR+RM+ ASFLVK LL+DWR GE +F L+D D A+N WQW A G D+ PYFRIFN Sbjct: 381 NRVRMVVASFLVKHLLIDWRAGERWFHDTLVDADAANNPANWQWVAGCGADAAPYFRIFN 440 Query: 411 PTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKN------DLSLNYPLPIVDHK 464 P QG++FDPQG ++R W+PEL + IHAP L L+YP PIVDH Sbjct: 441 PVTQGRKFDPQGEYVRRWVPELAGLDAAAIHAPWEASAAQLAAAGVRLGLDYPAPIVDHD 500 Query: 465 KACHHTLNQYYAAKK 479 A L+ K Sbjct: 501 GARRRALDALATLPK 515 >gi|84684767|ref|ZP_01012667.1| deoxyribodipyrimidine photolyase [Maritimibacter alkaliphilus HTCC2654] gi|84667102|gb|EAQ13572.1| deoxyribodipyrimidine photolyase [Rhodobacterales bacterium HTCC2654] Length = 475 Score = 386 bits (992), Expect = e-105, Method: Composition-based stats. Identities = 157/493 (31%), Positives = 241/493 (48%), Gaps = 38/493 (7%) Query: 6 AMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASL 65 + S ++W R DLR++D+ AL+AA + VI +FI G+ A + L Sbjct: 2 SASTVILWFRRDLRLSDHPALWAAANAG--LVIPLFIRDQSV---DGLGAAAKWRLGEGL 56 Query: 66 LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125 ++L +G+ + + D L + T++ ++R Y+ + RD ++ Sbjct: 57 RVFGEALEDRGLKLILRRGNARD----VLREVIEETGATEVHWSRLYDPEAIERDTDVKS 112 Query: 126 RLQHRVIC-KSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL 184 L+ I +S ++ P ++ YKVY+PF +A+ V P+P L Sbjct: 113 ALKEAGIVAESHPGHLIFEPWTVETQTGGPYKVYSPFWRAVKDRDVDE-----PLPTPDL 167 Query: 185 TGPVTPSNIPRFFDYPFQA--------IDPMFPIGEQNALHILRKFCKEKVYYYVEQRDI 236 TGP + + D+ A + GE+ A L F +K+ Y RD+ Sbjct: 168 TGPESWPDSDDLADWALGADMNRGAGVLAKYCNPGERAATSRLGSFVAQKIDAYKADRDL 227 Query: 237 PAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMA 296 PA TS++S YL+ G +SPRQ W + K+GA +L E++WREF HL+ Sbjct: 228 PAEDATSRMSEYLTYGEISPRQLW----AAGARAMDAGKAGAEHYLKEVVWREFAYHLLY 283 Query: 297 FYPSVCMGKPFIPWTEKIEWNKDSHL--LQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLR 354 +P + + + W +D L ++AWKQG TG P +DAA+R++ G+MHNR R Sbjct: 284 HFPQMLTEN-WREGWDDFPWREDERLAEVKAWKQGRTGVPFVDAALREMYVTGYMHNRAR 342 Query: 355 MITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQ 414 MI AS+L K ++ WR+G+ +F L D D ASN GWQW A G D+ PYFR+FNP Q Sbjct: 343 MIVASYLTKHCMIHWRVGQAWFDDCLTDWDPASNAMGWQWVAGCGPDAAPYFRVFNPETQ 402 Query: 415 GKRFDPQGTFIRHWLPELNNVPTQYIHA-----PHSWLDKNDLSLNYP-LPIVDHKKACH 468 G++FDP+GT+ + W+ E P + P SW K + NYP P+V K+ Sbjct: 403 GEKFDPKGTYQKRWIAEGQTSPPETATDYFEAIPRSW--KMEPGGNYPREPVVGLKEGRE 460 Query: 469 HTLNQYYAAKKQS 481 L Y A K S Sbjct: 461 AALAAYEARPKAS 473 >gi|148241324|ref|YP_001226481.1| deoxyribodipyrimidine photolyase [Synechococcus sp. RCC307] gi|147849634|emb|CAK27128.1| Deoxyribodipyrimidine photolyase [Synechococcus sp. RCC307] Length = 467 Score = 386 bits (991), Expect = e-105, Method: Composition-based stats. Identities = 165/480 (34%), Positives = 239/480 (49%), Gaps = 20/480 (4%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M L W R DLR+ DN L AA +V+ VF+ P + ++ + F+ SL Sbjct: 1 MGPWLFWHRRDLRLADNLGL-AAVSAITPEVMGVFVLDPAELEHPTMAPARRWFLLESLR 59 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 ++Q+ Q G + + +E L Q + +NR E +RD+ L Sbjct: 60 ELQQRWRQAGSQLLLLEG----NPVELLPRLAQQLGAAGVAWNRDVEPLVRQRDRELAAA 115 Query: 127 LQH-RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185 L+ V + D +L+PP + Y+VY P+ ++ + + + L Sbjct: 116 LKAIGVRVAADWDQLLVPPEQLKTGGGDPYRVYGPYWRSWEKQPKAKPVPAPSELKALLK 175 Query: 186 GPVTPSNIPRFFDYPFQAIDPM----FPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQG 241 + S +P + P + + GE AL L F + +Y E R++P +G Sbjct: 176 PDL--SGLPVLNEVPVEPWEGADLCPCRPGETAALEQLEHFAARAMEHYCEGRNLPGDEG 233 Query: 242 TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFS-WLNELIWREFYRHLMAFYPS 300 TS LS L G LSPR W + + + + + W EL WREFY+ + +P Sbjct: 234 TSTLSAALRAGSLSPRTAWAASLDVWSHCRSDEQRQSVTVWQQELAWREFYQQALFHFPE 293 Query: 301 VCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASF 360 + G P+ P + W D L+AW+ G TG PI+DAAMRQL G+MHNR RMI ASF Sbjct: 294 LADG-PYRPQWRQFPWEDDPVRLKAWQDGLTGVPIVDAAMRQLVQTGFMHNRCRMIVASF 352 Query: 361 LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDP 420 LVKDL+ DWR GE +FM+ +DGDLA+NNGGWQW+AS+G D P RIFNP Q +FDP Sbjct: 353 LVKDLICDWRHGEAFFMAHEVDGDLAANNGGWQWSASSGMDPKP-LRIFNPFTQASKFDP 411 Query: 421 QGTFIRHWLPELNNVPTQ-YIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479 + T+IR WLPEL ++ T+ I L++ YP PIV+HK+ Y A + Sbjct: 412 EATYIRRWLPELAHINTKDLISGDIGALERR----GYPEPIVNHKQQQARFKALYAALPR 467 >gi|254247729|ref|ZP_04941050.1| Deoxyribodipyrimidine photolyase [Burkholderia cenocepacia PC184] gi|124872505|gb|EAY64221.1| Deoxyribodipyrimidine photolyase [Burkholderia cenocepacia PC184] Length = 531 Score = 386 bits (991), Expect = e-105, Method: Composition-based stats. Identities = 149/479 (31%), Positives = 233/479 (48%), Gaps = 23/479 (4%) Query: 2 KATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFI 61 A + + +VW R+DLR+TD AL A S ++ VFI + ++ Sbjct: 41 SAKPSAAPAIVWFRDDLRVTDQPALTRAVE-SGRPLVCVFIDDTGAGAGPALGGAARWWL 99 Query: 62 YASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDK 121 + SL ++ +L++ G + D+ ++ +++NR+Y + D Sbjct: 100 HGSLARLDTALARHGGRLLLLRG----DAQREIERVVGDTGAAAVYWNRRYAQPQRDADA 155 Query: 122 LLEKRLQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVP 180 L+ L+ R + +S + S+L P +L + Y+V+T + +A ++ A P Sbjct: 156 ALKASLKARGVTVESSNGSLLNEPWEVLTGSGGPYQVFTAYWRAARRDRTVAAPLPAPER 215 Query: 181 AIRLTGPVT----------PSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYY 230 P + P D+ D E AL L F + Y Sbjct: 216 IAFHPWPQAVRDRALALDALALRPHAPDWAGGLRDAWPAPDEAGALARLDTFLTTSLAGY 275 Query: 231 VEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREF 290 + RD P TS+LSP+L G +SPRQ W+ ++ + A +L+EL WREF Sbjct: 276 ADARDRPDRPATSRLSPFLRFGNVSPRQVWHAVQGAANAGGAVYAAHADKFLSELGWREF 335 Query: 291 YRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMH 350 L+ +P++ F + + W D L+AW++G TG+P++DA +R+L T GWMH Sbjct: 336 SYTLLYHFPALATDN-FRAQFDAMPWRDDPAALRAWQRGRTGYPLVDAGLRELWTTGWMH 394 Query: 351 NRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFN 410 NR+RM+ ASFL+K LL+DWR GE +F L+D D A+N WQW A G D+ PYFRIFN Sbjct: 395 NRVRMVVASFLIKHLLIDWRAGEAWFRDTLVDADPANNAASWQWVAGCGADAAPYFRIFN 454 Query: 411 PTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSW------LDKNDLSLNYPLPIVDH 463 P QG++ DP G ++R W+PEL + IHAP L ++YP P+V+H Sbjct: 455 PVAQGQKCDPDGAYVRRWVPELAGLDDASIHAPWEASPLALEAAGVRLGIDYPAPLVEH 513 >gi|328544427|ref|YP_004304536.1| Deoxyribodipyrimidine photolyase family [polymorphum gilvum SL003B-26A1] gi|326414169|gb|ADZ71232.1| Deoxyribodipyrimidine photolyase family [Polymorphum gilvum SL003B-26A1] Length = 480 Score = 386 bits (991), Expect = e-105, Method: Composition-based stats. Identities = 160/485 (32%), Positives = 234/485 (48%), Gaps = 25/485 (5%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQ-WRQHGISARQSHFIYASLLQ 67 LVW R DLRI DN AL+ A V+ VF+ H + A +++ SL Sbjct: 2 TTLVWFRQDLRIADNPALFEAAARG--SVLPVFVLDEGPGDNTHPLGAASRWWLHHSLEA 59 Query: 68 VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127 + + L + ++ D + V + +NR YE + VRRD L+ L Sbjct: 60 LARDLGRLVLL--------HGDPQRLIPELARAAGVGAVHWNRCYEPHAVRRDTALKAAL 111 Query: 128 -QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 V +SF+ ++L P + +KV++P+ +A + V L P I Sbjct: 112 IAAGVEVRSFNAALLNEPWELETKTGGPFKVFSPYWRAALARPVATPLPRPPRLEIAAGQ 171 Query: 187 PVTPSNIPRF----FDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGT 242 + R D+ D ++ GE A L F + + Y RD P + Sbjct: 172 AGDRLDDWRLRPTAPDWAAGWRD-LWHPGEAGAAERLEHFLEAGLDGYATLRDRPDLSHV 230 Query: 243 SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVC 302 S+LSP+L G +SPRQ R + + A +L E+ WREF HL+ +P + Sbjct: 231 SRLSPHLHFGEVSPRQVVARTR-FAAGRTPGLERDADKFLAEIGWREFSHHLLYHFPRLP 289 Query: 303 MGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLV 362 + + + W S L W++G TG+P++DA MR+L G+MHNR+RM+ ASFLV Sbjct: 290 E-RNWKSTFDAYPWRDSSGDLAVWQRGQTGYPMVDAGMRELWATGYMHNRVRMLAASFLV 348 Query: 363 KDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQG 422 K L +DWR+GE +F L+D DLA+N GWQW A +G D+ PYFRIF+P QG+RFDP G Sbjct: 349 KHLRLDWRLGEAWFRDTLVDADLANNAAGWQWVAGSGADAAPYFRIFSPVGQGRRFDPGG 408 Query: 423 TFIRHWLPELNNVPTQYIHAPHSW------LDKNDLSLNYPLPIVDHKKACHHTLNQYYA 476 ++R W PEL +P ++HAP +L YP PIVDH A L Y A Sbjct: 409 AYVRRWCPELARLPDDHVHAPFDAPAVVLKAAGVELGRTYPHPIVDHAAARAEALAGYEA 468 Query: 477 AKKQS 481 ++ Sbjct: 469 VRRAG 473 >gi|257053940|ref|YP_003131773.1| Deoxyribodipyrimidine photo-lyase [Halorhabdus utahensis DSM 12940] gi|256692703|gb|ACV13040.1| Deoxyribodipyrimidine photo-lyase [Halorhabdus utahensis DSM 12940] Length = 470 Score = 386 bits (991), Expect = e-105, Method: Composition-based stats. Identities = 157/476 (32%), Positives = 236/476 (49%), Gaps = 15/476 (3%) Query: 9 VHLVWLRNDLRITDNKALY-AACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67 + + W R DLR+ DN+AL +D +V+ VF+ P + + ++ Sbjct: 1 MRIHWHRRDLRLADNRALAGDGIETNDEQVLGVFVFDPAVLE--HAGPARVVALLDAVAA 58 Query: 68 VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127 ++++ ++G D + L + + +NR+Y RD + L Sbjct: 59 LREAYRERGSDLVLASG----DPVAELPTLATTYGAELVTWNREYSPLARDRDAAVRASL 114 Query: 128 QHRVICK-SFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 I + + D+VL PG+I + Y+V+T F + A + ++ Sbjct: 115 DDAGIGRDAVHDAVLHEPGTIRTNDGDPYQVFTYFWRKWRDRRKSAPIAPPDADSLGDVT 174 Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGE-QNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245 TP +P + D + P A L FC +Y Y ++RD PA TS+L Sbjct: 175 DDTP--VPTWADLDVEEPTASIPGVTPAAARERLDSFCAGDIYRYEDRRDYPAEDCTSRL 232 Query: 246 SPYLSIGVLSPRQCWNRLKEE-FVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304 S +L G + R + + ++ + ++L WREFY ++ F PSV Sbjct: 233 SHHLKYGTIGIRAVYAATERACERGETADDRASVREFQSQLAWREFYTQVLWFNPSVVTE 292 Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364 F + IEW D LQAWK G TG+PI+DA MRQL T +MHNR+RMI ASFL KD Sbjct: 293 N-FKSYENPIEWRTDPEGLQAWKDGETGYPIVDAGMRQLETAAYMHNRVRMIVASFLTKD 351 Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424 LL+DWR G ++F ++L+D D A++NGGWQWAASTG D+ PYFRIFNP QG+R+DP + Sbjct: 352 LLIDWREGYDWFRAKLVDHDTANDNGGWQWAASTGTDAQPYFRIFNPMTQGERYDPDAAY 411 Query: 425 IRHWLPELNNVPTQYIHAPHSW--LDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478 IR ++PEL+ VP IH+ H + + +YP PIVDH L + A+ Sbjct: 412 IREYVPELDGVPADVIHSWHELDPGAREMHAPDYPAPIVDHADRREQALAMFERAR 467 >gi|304571342|dbj|BAJ15789.1| cryptochrome2 [Cardamine alpina] Length = 591 Score = 386 bits (991), Expect = e-105, Method: Composition-based stats. Identities = 136/485 (28%), Positives = 221/485 (45%), Gaps = 24/485 (4%) Query: 17 DLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQKSLSQKG 76 DLRI DN AL AA H V VFI PE+ Q ++ SL + +SL G Sbjct: 1 DLRIEDNPALAAAAHEG--SVFPVFIWCPEEEGQFYPGRASRWWMKQSLSHLSQSLKALG 58 Query: 77 IVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHRVI-CKS 135 + N ++ + TK+ +N Y+ + RD ++++L I +S Sbjct: 59 SELTLIKTHN---TVSAILDCIRVTGATKVVFNHLYDPVSLVRDHTVKEKLVEVGISVQS 115 Query: 136 FDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPSNIPR 195 F+ +L P I + ++ + K ++ +++ + P + +T Sbjct: 116 FNGDLLYEPWEIYCEKGKPLTSFSSYWKKCLEMSIESVMLPPPWRLMPVTAAAEAVWACS 175 Query: 196 FFDYPFQA---------IDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246 + + + + G NA IL +F ++++ Y + TS LS Sbjct: 176 IEELGLENEAEKPSNALLTRAWSPGWSNADKILNEFIEKQLIDYAKNSKKVVGNSTSLLS 235 Query: 247 PYLSIGVLSPRQCWN--RLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304 PYL G +S R+ + R+K+ + A +L + RE+ R+L +P Sbjct: 236 PYLHFGEISIRRVFQCARMKQIIWAKNSEGDESADLFLKGIGLREYSRYLCFNFP-FTHE 294 Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364 + + W+ D +AW+QG TG+P++DA MR+L GWMHNR+R+I +SF VK Sbjct: 295 QSLLSHLRFFPWDADVEKFKAWRQGRTGYPLVDAGMRELWATGWMHNRIRVIVSSFAVKF 354 Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424 LL+ W+ G +YF LLD DL + GWQ+ + + D R+ NP IQG +FDP+G + Sbjct: 355 LLLPWKWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELDRLDNPAIQGAKFDPEGDY 414 Query: 425 IRHWLPELNNVPTQYIHAPHSW------LDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478 IR WLPEL +P+++IH P +L NY PIVD A + Sbjct: 415 IRQWLPELARLPSEWIHHPWDAPLTVLKASGVELGTNYAKPIVDIDTARELLTKAIARTR 474 Query: 479 KQSLL 483 + ++ Sbjct: 475 EAQIM 479 >gi|298291394|ref|YP_003693333.1| deoxyribodipyrimidine photo-lyase [Starkeya novella DSM 506] gi|296927905|gb|ADH88714.1| Deoxyribodipyrimidine photo-lyase [Starkeya novella DSM 506] Length = 479 Score = 386 bits (991), Expect = e-105, Method: Composition-based stats. Identities = 156/489 (31%), Positives = 239/489 (48%), Gaps = 23/489 (4%) Query: 1 MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHF 60 M A S LVW R+DLR+ DN AL+AA S ++ +++ E + + Sbjct: 1 MPA----SPALVWFRDDLRLADNPALHAA-QRSGRPLVLLYLLDEESEGIRPLGGAARWW 55 Query: 61 IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120 + +L V +++ KG + E + + + + +++NR+Y E+ D Sbjct: 56 LGRALASVTEAIEAKGGQLILRRGKAG----EVVPAVAAEAKAGAIYWNRRYGAAEIAVD 111 Query: 121 KLLEKRLQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLR---- 175 L+ L + + +SF+ S+L P ++ + +KV+ PF + Q+ ++ R Sbjct: 112 AALKTELAQKGLMVESFNGSLLHEPWTVKTQSGGPFKVFGPFYRNAAQHDIRRPARVGSH 171 Query: 176 SLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRD 235 P D+ + + GE L F + Y RD Sbjct: 172 WHFAETPAGDELRDWKLEPTTPDW-AGGLRESWIPGEDGGRAALAAFVDGGLRSYAAGRD 230 Query: 236 IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLM 295 P ++ TS+LSPYL G LSP+Q ++ D + +++EL WREF HL+ Sbjct: 231 RPDMEHTSRLSPYLRFGHLSPQQVLAAVR-HAADAGEVRGTDVEKFVSELYWREFSYHLL 289 Query: 296 AFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRM 355 +P + F + EWN+D+ + +AW++G TG+P+IDA MRQL GWMHNR+RM Sbjct: 290 FHFPDLAQVN-FNRRFDGFEWNQDAKIERAWQRGLTGYPLIDAGMRQLWQTGWMHNRVRM 348 Query: 356 ITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQG 415 + ASFL+K LVDWR GE +F L+D D A+N WQW A +G D+ PYFRIFNP QG Sbjct: 349 VAASFLIKHALVDWRRGEVWFWDTLVDADPANNAASWQWVAGSGADAAPYFRIFNPVTQG 408 Query: 416 KRFDPQGTFIRHWLPELNNVPTQYIHAPHS------WLDKNDLSLNYPLPIVDHKKACHH 469 ++FDP G ++R ++PEL +P IH P L YP PIVDH A Sbjct: 409 EKFDPDGAYVRRFVPELAGLPDTSIHKPWQAPPQVLAQAGVRLGETYPHPIVDHAAARRR 468 Query: 470 TLNQYYAAK 478 L +Y + Sbjct: 469 ALERYQRIR 477 >gi|221215267|ref|ZP_03588233.1| deoxyribodipyrimidine photo-lyase (DNA photolyase)(Photoreactivating enzyme) [Burkholderia multivorans CGD1] gi|221164951|gb|EED97431.1| deoxyribodipyrimidine photo-lyase (DNA photolyase)(Photoreactivating enzyme) [Burkholderia multivorans CGD1] Length = 554 Score = 385 bits (990), Expect = e-105, Method: Composition-based stats. Identities = 152/463 (32%), Positives = 223/463 (48%), Gaps = 12/463 (2%) Query: 6 AMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASL 65 MSV +V R DLR++D+ AL AAC DA V+ V++ P++ A +++ SL Sbjct: 78 RMSVAIVLFRRDLRLSDHPALSAACARHDA-VLPVYVHAPDEDTAWAPGAASRWWLHHSL 136 Query: 66 LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125 + ++L Q+G + D + +++ R+YE + D L+ Sbjct: 137 TSLDRALRQQGAQLHVMEG----DPTIAVPMLARAVGAQAVYWTRRYEPTAIACDTALKT 192 Query: 126 RLQ-HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL 184 L+ + S ++ P ++ A Q Y+V+TPF + L +L P L Sbjct: 193 TLRAEGIAAHSHPGALWQEPWTLTTEAGQPYRVFTPFWRKLRTSLSDCHPLPAARPRRWL 252 Query: 185 T--GPVTPSNIPRFFDYPFQA-IDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQG 241 T G + I + A + + GE A L +F E + Y + RD PA G Sbjct: 253 TADGSIPIDAIGLLPPIRWDAGLAEAWRPGEAGAWERLEQFVDEALAEYGDARDAPARMG 312 Query: 242 TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSV 301 TS+LS +L G ++P Q L+E + +L EL WREF HL+ +P Sbjct: 313 TSRLSAHLHFGEITPTQMLRTLQERVARTSDSDRPDLEPFLRELGWREFAHHLLYHFPHT 372 Query: 302 CMGKPFIPWTEKIEW-NKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASF 360 F + W D L W+QG TG P++DA MRQL GWMHNR+RM ASF Sbjct: 373 TDAN-FDARFDTFAWAPDDDDQLARWQQGRTGIPLVDAGMRQLWQTGWMHNRVRMAVASF 431 Query: 361 LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDP 420 L K+L WR G +F L+D DLA+N GWQW A G D+ PYFR+FNP +Q RFDP Sbjct: 432 LTKNLRQHWRHGARWFWDTLVDADLANNTLGWQWVAGCGADAAPYFRVFNPYLQAARFDP 491 Query: 421 QGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDH 463 +++ WLPEL+ +P +H P + YP P++D Sbjct: 492 DAAYLKRWLPELSGLPADVLHRPWKHPAALAV-CGYPAPMIDL 533 >gi|42523667|ref|NP_969047.1| deoxyribodipyrimidine photolyase-class I [Bdellovibrio bacteriovorus HD100] gi|39575874|emb|CAE80040.1| deoxyribodipyrimidine photolyase-class I [Bdellovibrio bacteriovorus HD100] Length = 435 Score = 385 bits (990), Expect = e-105, Method: Composition-based stats. Identities = 152/478 (31%), Positives = 222/478 (46%), Gaps = 50/478 (10%) Query: 8 SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQ-HGISARQSHFIYASLL 66 V L W R DLR+ DN LY A A V+ +FI E + + FIY + Sbjct: 3 KVTLFWFRRDLRLDDNAGLYHALKERSA-VLPLFIFDSEILENLDDPADARVTFIYEQIQ 61 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 +++ L+ K +E L + + V ++ N YE +RD+ + Sbjct: 62 DMKQQLNAKKSDLIVRHGKP----LEVLKTLSDEMAVEAIYANHDYEPAARKRDEKVAAW 117 Query: 127 L-QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185 + + +F D L IL A + Y VYTP+R ++ NL + L+S P + Sbjct: 118 AAKAGIEFLTFKDQCLFEKDEILTDARKPYTVYTPYRNKVLANLSEFYLKSYPNDLYESS 177 Query: 186 GPV--TPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ-GT 242 + F+ + FP + + Y RD PA + GT Sbjct: 178 YAKVKKAEPLLTLKSLGFERSNIEFPP---------MDLSTKMLKTYHATRDFPADEKGT 228 Query: 243 SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVC 302 S L +L G LS R+ K+ WL+ELIWR+F+ ++ +P V Sbjct: 229 SHLGLHLRFGTLSVRELAREAKKYSP-----------VWLSELIWRDFFMQILWHFPQV- 276 Query: 303 MGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLV 362 + F P +KI W K Q W +G TG+P++DA MR+LN G+MHNR+RM+ ASFL Sbjct: 277 ENQSFRPEYDKIAWRKSKADFQKWCEGRTGYPLVDAGMRELNATGYMHNRVRMVVASFLC 336 Query: 363 KDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQG 422 K LL+ W GE YF +LLD DL++NNG WQWAA +G D+ PYFRIFNP Q ++FDP G Sbjct: 337 KHLLIHWYEGERYFAKKLLDYDLSANNGNWQWAAGSGCDAAPYFRIFNPQTQFEKFDPDG 396 Query: 423 TFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQ 480 +++ W+PE + YP P+VDH +A L + K+ Sbjct: 397 KYVQKWVPEYG-------------------TDEYPQPMVDHNEARGRCLQAFTKVLKK 435 >gi|296110301|ref|YP_003620682.1| hypothetical protein LKI_00850 [Leuconostoc kimchii IMSNU 11154] gi|295831832|gb|ADG39713.1| hypothetical protein LKI_00850 [Leuconostoc kimchii IMSNU 11154] Length = 478 Score = 385 bits (990), Expect = e-105, Method: Composition-based stats. Identities = 175/488 (35%), Positives = 253/488 (51%), Gaps = 36/488 (7%) Query: 8 SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67 ++W R DLR++DN AL A NSD K++ VF +Q + + S F AS+ Q Sbjct: 3 KTSVMWFRRDLRVSDNIALAHAVENSD-KILFVFHIDTQQLEKQPTVNQSSFF--ASVQQ 59 Query: 68 VQKSLSQKGIVFQYHQC---SNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLE 124 ++KSL ++ I F+ + L + L++NR RD+++ Sbjct: 60 LKKSLKKQNINLYVFYGELKDMFNHIKKQLPHWR------DLYFNRDEHGYGGERDQVIT 113 Query: 125 KRLQH--RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALI----QNLVQADLRSLP 178 K Q + + D L I Y+V+TP+ K + N + DL ++ Sbjct: 114 KYCQEKLNISVHATMDYNLHAAHDIKKADGHYYQVFTPYFKRWMTLVKSNPITIDLTNIS 173 Query: 179 VPAIRLTGPVTPSNIPRFFD--YPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDI 236 + ++ S + D + + +D IGE A IL F + K+ Y + RD+ Sbjct: 174 QEHLTVSTLEQDSMLDALIDEKHSYAYVD---QIGEDKARKILSDFIENKLTQYDQNRDV 230 Query: 237 PAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMA 296 P++ TS LS YL G +S R + +K+ G +++ EL WR++Y + A Sbjct: 231 PSLDATSHLSRYLRTGEISIRVVYEGIKQA------PDSDGRSTFIKELCWRDYYNMIYA 284 Query: 297 FYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMI 356 +P P +I W D W+ G+TGFPI+DAAMRQLN GWMHNRLRMI Sbjct: 285 THPQQNES-AIRPEFRQIRWRDDKIGFDDWQTGHTGFPIVDAAMRQLNETGWMHNRLRMI 343 Query: 357 TASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGK 416 ASFL KDLL++W+ GE YF +L+D D ASN GGWQWAASTG DSVPYFRIFNPT+Q K Sbjct: 344 VASFLTKDLLINWQWGENYFKQKLVDYDPASNIGGWQWAASTGTDSVPYFRIFNPTLQSK 403 Query: 417 RFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND------LSLNYPLPIVDHKKACHHT 470 +FDPQG FI+ ++PEL +P IH P+ + + +YP PIV+HK A + Sbjct: 404 KFDPQGLFIKKYIPELKRIPGAKIHEPNKLSSIDQKRYHISIGHDYPKPIVNHKTARINA 463 Query: 471 LNQYYAAK 478 + Y +K Sbjct: 464 IAAYEKSK 471 >gi|150025093|ref|YP_001295919.1| deoxyribodipyrimidine photolyase PhrB1 [Flavobacterium psychrophilum JIP02/86] gi|149771634|emb|CAL43108.1| Deoxyribodipyrimidine photolyase PhrB1 [Flavobacterium psychrophilum JIP02/86] Length = 428 Score = 385 bits (989), Expect = e-104, Method: Composition-based stats. Identities = 147/470 (31%), Positives = 210/470 (44%), Gaps = 45/470 (9%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 +++ W R DLR+ DN L+ A NSD ++ +FI Q + FI+ L ++ Sbjct: 1 MNIFWFRRDLRLDDNVGLFHAL-NSDQTILPIFIFDYNILSQLSKDDARVTFIHELLSKM 59 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128 QK L +KG + E + + +V ++ N YE +RDK L + Sbjct: 60 QKKLQEKGKSLAV----FYGKPSEIFEKLISENKVKTIYTNHDYEPYARKRDKELNQLFA 115 Query: 129 -HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187 H + + D V+ + + Y VYTP+ + Q L++ Sbjct: 116 NHNIQFLTSKDQVIFEKSEVTKDDGKPYIVYTPYTNKWKEKFKQTTLKNYNSENYLDKIV 175 Query: 188 VTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSP 247 P F+ + + Y R+ P++ TS L Sbjct: 176 THPYPFLSLESIGFETSKITVAS---------YDISENLIDNYEATRNFPSLNKTSFLGI 226 Query: 248 YLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPF 307 YL G +S R+ KS ++ ELIWREF+ ++ +P K F Sbjct: 227 YLRFGAVSVRKMMQEAI----------KSKNETFFKELIWREFFMQILWHFPHTI-NKSF 275 Query: 308 IPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLV 367 + I W L Q W QG TG+P +DA MR+LN G MHNR+RMI ASFL K LL+ Sbjct: 276 KEKYDAIIWENKEDLFQKWCQGKTGYPFVDAGMRELNATGHMHNRVRMIVASFLCKHLLI 335 Query: 368 DWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRH 427 DWR GE YF ++LLD + +SN G WQWAA +G D+ PYFRIFNPT Q K+FD +I+ Sbjct: 336 DWRWGETYFATKLLDYEQSSNVGNWQWAAGSGVDAAPYFRIFNPTEQIKKFDKDLKYIKK 395 Query: 428 WLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477 W+PEL + +YP PIV+HK A L Y A Sbjct: 396 WIPELQ-------------------TSHYPEPIVEHKFARERCLKVYKEA 426 >gi|170703393|ref|ZP_02894172.1| Deoxyribodipyrimidine photo-lyase [Burkholderia ambifaria IOP40-10] gi|170131701|gb|EDT00250.1| Deoxyribodipyrimidine photo-lyase [Burkholderia ambifaria IOP40-10] Length = 505 Score = 385 bits (988), Expect = e-104, Method: Composition-based stats. Identities = 158/499 (31%), Positives = 248/499 (49%), Gaps = 27/499 (5%) Query: 1 MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHF 60 M A ++++ +VW R+DLR+TD AL A S ++ V++ + + + Sbjct: 1 MSAKSSVAPAVVWFRDDLRVTDQPALTRAVA-SGRPLVCVYLDDTGEGAGRALGGAARWW 59 Query: 61 IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120 ++ SL + +L++ G + D+ ++ +++NR+Y + D Sbjct: 60 LHGSLAALDAALARHGGRLLLLRG----DAQREIERVVHDTGAAAVYWNRRYAQPQRDAD 115 Query: 121 KLLEKRLQHRV-ICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPV 179 L+ L+ R +S + S+L P ++ A ++++T + +A+ ++ + LP Sbjct: 116 AALKATLKARGLEVESSNGSLLNEPWEVMTGAGTPFQIFTAYWRAVRRD--RTVAAPLPE 173 Query: 180 PAIRLTGPVTPSNIPRFFDYPFQAIDPM---FPIG---------EQNALHILRKFCKEKV 227 P P R A+ P + G E A L F + Sbjct: 174 PERIAFHPWPAGMRERALALDTLALRPHAPDWAGGLRDAWPTPDEAGAHAGLDAFVHASL 233 Query: 228 YYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIW 287 Y + RD P TS+LSP+L G +SPRQ W+ ++ +GA +L+EL W Sbjct: 234 AGYADSRDRPGQPATSRLSPFLRFGNVSPRQVWHAVQGAAQAGGAACAAGAEKFLSELGW 293 Query: 288 REFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIG 347 REF L+ +P++ F + + W D L+AW++G TG+P++DA MR+L T G Sbjct: 294 REFSHVLLYHFPALATDN-FRAQFDAMPWRDDPAALRAWQRGLTGYPLVDAGMRELWTTG 352 Query: 348 WMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFR 407 WMHNR+RM+ ASFLVK LL+DWR+GE +F L+D D A+N WQW A G D+ PYFR Sbjct: 353 WMHNRVRMVVASFLVKHLLIDWRVGERWFHDTLVDADAANNPANWQWVAGCGADAAPYFR 412 Query: 408 IFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKN------DLSLNYPLPIV 461 IFNP QG++FDPQG ++R W+PEL + IHAP L+L+YP PIV Sbjct: 413 IFNPVTQGRKFDPQGAYVRRWVPELAGLDAAAIHAPWEASTAQLAAAGVRLALDYPAPIV 472 Query: 462 DHKKACHHTLNQYYAAKKQ 480 DH A L+ K+ Sbjct: 473 DHDGARRRALDALATLPKR 491 >gi|78211765|ref|YP_380544.1| deoxyribodipyrimidine photo-lyase type I [Synechococcus sp. CC9605] gi|78196224|gb|ABB33989.1| Deoxyribodipyrimidine photolyase [Synechococcus sp. CC9605] Length = 477 Score = 385 bits (988), Expect = e-104, Method: Composition-based stats. Identities = 163/483 (33%), Positives = 224/483 (46%), Gaps = 22/483 (4%) Query: 8 SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISA----RQSHFIYA 63 S L W R DLR+ DN L A S A V V++ P + F+ Sbjct: 4 SRVLFWHRRDLRLADNLGLVVAAQISPA-VTGVYVLDPAVINPPPELPPMAPARLWFLIE 62 Query: 64 SLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLL 123 SL+++Q+ + G + D + L Q + +NR E +RD+ + Sbjct: 63 SLVELQQRWREAGSRLLVVEG----DPVAVLPQVAQQISAEAVVWNRDVEPYARKRDRQV 118 Query: 124 EKRLQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPA- 181 K LQ + D +L+ P + A Y+VY PF + ++ ++ P Sbjct: 119 AKTLQADGRRVVADWDQLLIAPELLKTGAGDPYRVYGPFLRNWRGQVLAQKPATVAAPTG 178 Query: 182 ----IRLTGPVTPSNIPRFFDYPFQAIDPMFP-IGEQNALHILRKFCKEKVYYYVEQRDI 236 P + FQ + GE AL L FC + Y R+ Sbjct: 179 LVDLPPELMPAGDPLPALRESHGFQGSEICPCRPGEAAALEQLTTFCNGPLLGYEPDRNF 238 Query: 237 PAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPK-SGAFSWLNELIWREFYRHLM 295 P GTS LS LS+G LSPRQ W ++ + + W EL WREFY+ + Sbjct: 239 PGTAGTSYLSAALSVGTLSPRQAWCAAQDSREQARSEEQLQAIAVWEQELGWREFYQQAL 298 Query: 296 AFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRM 355 ++P + G P+ + W + WK+G TG PIIDAAMRQLN GWMHNR RM Sbjct: 299 FYFPELADG-PYREQWRRFPWENNEDWFDFWKEGQTGMPIIDAAMRQLNQTGWMHNRCRM 357 Query: 356 ITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQG 415 I AS+LVKDL+ DWR GE FM +DGDLA+NNGGWQW+AS+G D+ P RIFNP Q Sbjct: 358 IVASYLVKDLICDWRWGERAFMELEVDGDLAANNGGWQWSASSGMDTKP-LRIFNPATQA 416 Query: 416 KRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYY 475 +FD G +IR W+PEL +V T+ + S +YP P+VDHK Y Sbjct: 417 SKFDSAGDYIRRWVPELRHVNTKDL---LSGEIGALERRDYPEPLVDHKNQQARFKALYA 473 Query: 476 AAK 478 + Sbjct: 474 TIR 476 >gi|118363134|ref|XP_001014668.1| FAD binding domain of DNA photolyase family protein [Tetrahymena thermophila] gi|89296559|gb|EAR94547.1| FAD binding domain of DNA photolyase family protein [Tetrahymena thermophila SB210] Length = 486 Score = 384 bits (987), Expect = e-104, Method: Composition-based stats. Identities = 161/479 (33%), Positives = 238/479 (49%), Gaps = 50/479 (10%) Query: 3 ATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQ-HGISARQSHFI 61 A V + W R DLR+ DN ALY A S +V+ +FI E + + FI Sbjct: 51 AKQKRKVSIFWFRRDLRLNDNTALYNALK-SQNEVVPLFIFDTEILDKLEDKKDARVEFI 109 Query: 62 YASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDK 121 + ++++Q+ L Q G + + + + ++ NR YE + +RD+ Sbjct: 110 HLYIMKIQEQLKQVGSTLIVKHGTVDN----AFKELVSEFDIQSVYVNRDYESSAKQRDE 165 Query: 122 LLEKRLQH--RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPV 179 ++K ++ F D V+ S N YKV+TP+ K + L D P Sbjct: 166 RIKKYVKQSANAEFYDFKDQVIFEASS-TNKDGSPYKVFTPYSKKWLSILTSEDYSCRPS 224 Query: 180 PAIRLTGPVTPS-NIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPA 238 ++ +P + + F+ FP E N ++ V Y + RD P+ Sbjct: 225 ESLMEKFWKSPERKVMSLEEIGFEKAGIPFPSVELN---------EKIVKNYDKTRDTPS 275 Query: 239 IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFY 298 I+GT+++S +L G +S R DL+ + K ++LNELIWR+FY ++ + Sbjct: 276 IEGTTRMSVHLRFGTVSIR-----------DLVRRSKGLNATYLNELIWRDFYMMILDQF 324 Query: 299 PSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITA 358 P V F P +K+ W + AW +G TG+ ++DA MRQLN G+MHNR+RM+ A Sbjct: 325 PHV-ENNNFKPAYDKLVWRNNVDEFMAWCEGKTGYHLVDAGMRQLNQTGYMHNRVRMVVA 383 Query: 359 SFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRF 418 SFL K LL+DW+ GE YF S+LLD DL++NNGGWQWAA TG D+ PYFRIFNP Q K+F Sbjct: 384 SFLTKHLLIDWKWGERYFASKLLDYDLSANNGGWQWAAGTGTDAQPYFRIFNPDSQQKKF 443 Query: 419 DPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477 DP T+I+ W+ +LN + YP PIVDHK A L + A Sbjct: 444 DPNYTYIKTWIKDLN-------------------TKTYPKPIVDHKLARERCLQAFKKA 483 >gi|325292582|ref|YP_004278446.1| DNA photolyase [Agrobacterium sp. H13-3] gi|325060435|gb|ADY64126.1| DNA photolyase [Agrobacterium sp. H13-3] Length = 479 Score = 384 bits (987), Expect = e-104, Method: Composition-based stats. Identities = 158/501 (31%), Positives = 231/501 (46%), Gaps = 46/501 (9%) Query: 4 TTAMSVHLVWLRNDLRITDNKALYAACH--------NSDAKVIAVFIATPEQWRQHGISA 55 T S +VW R D VI ++I + + Sbjct: 2 PTKSSPVIVWFRKD---------LRLADNLALLAAVEHGGPVIPIYI---RETSSGPLGG 49 Query: 56 RQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEIN 115 Q +++ SL + +L + G ++ E L + + +NR+YE Sbjct: 50 AQEWWLHHSLASLSAALEKCGSRLLLRSG----NAEETLRRLIAETGADAVLWNRRYEPT 105 Query: 116 EVRRDKLLEKRL-QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADL 174 + DK +++ L + +SF +L P + + Y+VYTPF +AL + Sbjct: 106 GMATDKAIKEALGDDGLTVRSFAGHLLHEPSRVQTKSGGPYRVYTPFWRALEGSEEPHTP 165 Query: 175 RSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDP--------MFPIGEQNALHILRKFCKEK 226 P L P T S + D+ + P ++ GE A L F Sbjct: 166 ADAPQS---LKAPETWSKSEKLDDWKLLPVKPDWAKDFSEIWTPGENAAREKLDDFIDGA 222 Query: 227 VYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELI 286 + Y E RD PA TS L+P+L++G +SP W+ K + + + EL+ Sbjct: 223 LKGYEEGRDFPAKDATSLLAPHLALGEISPAAVWHATKGLSRHI---ASNDISRFRKELV 279 Query: 287 WREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTI 346 WREF HL+ +P + K + W D AW +G TG+PI+DA MRQL Sbjct: 280 WREFCYHLLFHFPEL-DEKNWNDSFGAFGWRDDDTSFNAWTRGMTGYPIVDAGMRQLWKH 338 Query: 347 GWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYF 406 G MHNR+RMI ASFL+K LL+DWR GE++F L+D D ASN WQW A +G D+ P+F Sbjct: 339 GTMHNRVRMIVASFLIKHLLIDWRKGEKWFRDTLVDADPASNAANWQWVAGSGADASPFF 398 Query: 407 RIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIH----APHSWLDKNDLSLN--YPLPI 460 RIFNP +QG++FD +G ++R ++PEL + +YIH AP L K + L YPLPI Sbjct: 399 RIFNPILQGEKFDAEGDYVRRFVPELERLERKYIHKPFEAPKEVLKKAGIELGKTYPLPI 458 Query: 461 VDHKKACHHTLNQYYAAKKQS 481 VDH KA L Y K + Sbjct: 459 VDHGKARERALAAYAEVKNNA 479 >gi|91774219|ref|YP_566911.1| deoxyribodipyrimidine photo-lyase type I [Methanococcoides burtonii DSM 6242] gi|91713234|gb|ABE53161.1| Deoxyribodipyrimidine photolyase [Methanococcoides burtonii DSM 6242] Length = 467 Score = 384 bits (987), Expect = e-104, Method: Composition-based stats. Identities = 160/482 (33%), Positives = 227/482 (47%), Gaps = 26/482 (5%) Query: 4 TTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGIS--ARQSHFI 61 T+ ++ L R D+R+ DN AL AA SD VI FI P G + + F+ Sbjct: 2 TSRLNRSLFVFRRDMRVDDNSALLAALDMSDV-VIPCFILDPRLCDPKGKAFNSNALQFL 60 Query: 62 YASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDK 121 SL ++ L + + + +F N Y ++RD Sbjct: 61 LESLYDLKGQLEKVNGRLYLFSGLPEG----VIGQLLENLEIDAVFVNHDYTPFSIKRDM 116 Query: 122 LLEKRL-QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVP 180 + V F D +L PGSI YKV+T F + + V Sbjct: 117 QIASICTDKGVDMLQFHDCLLHEPGSIRTKKGTPYKVFTQFFREASKRDVAVPSMFSGGS 176 Query: 181 AIRLTGPVTPSNIPRFF--DYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPA 238 V + F P + G N L +L+ + Y +RD+P+ Sbjct: 177 FFTGDCGVDEVDEGSFLKRSLPERNEQIFVHGGRANGLSVLQSLSQ--FVNYDTERDLPS 234 Query: 239 IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFY 298 ++GT+ LS + +G +S R+ + + +E + +NEL WR+F+ + + Sbjct: 235 VKGTTGLSAHNKLGTISIREFYYSVIDEL--------GRGHTLINELYWRDFFTQISFEF 286 Query: 299 PSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITA 358 P V F + + W+ D AW G TGFPI+DA MR+LNT G+MHNR+RMI A Sbjct: 287 PDVFKH-AFKKKFDHLSWDNDRIFFDAWCLGKTGFPIVDAGMRELNTTGYMHNRVRMIVA 345 Query: 359 SFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRF 418 SFLVKDL +DW+ GE YF S+L+D D NNG WQWAASTG DS PYFRIFNP +Q K+F Sbjct: 346 SFLVKDLHIDWKRGERYFASKLVDYDPCVNNGNWQWAASTGADSQPYFRIFNPWLQQKKF 405 Query: 419 DPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLS-LNYPLPIVDHKKACHHTLNQYYAA 477 D +I+ W+PEL ++ Q IH L+K D+ YP PIVDH K L + AA Sbjct: 406 DKDCKYIKKWIPELEDIEPQRIHK----LEKGDMDIPGYPAPIVDHSKEREVALFMFKAA 461 Query: 478 KK 479 + Sbjct: 462 SQ 463 >gi|296083651|emb|CBI23640.3| unnamed protein product [Vitis vinifera] Length = 646 Score = 384 bits (986), Expect = e-104, Method: Composition-based stats. Identities = 139/486 (28%), Positives = 233/486 (47%), Gaps = 26/486 (5%) Query: 1 MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHF 60 M + + +VW R DLR+ DN AL A V+ VFI P++ Q + Sbjct: 1 MSSDSR---TVVWFRRDLRVDDNPALATAAKEG--SVLPVFIWCPKEEGQFYPGRVSRWW 55 Query: 61 IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120 + SL+ +++SL G + + +IE L TKL YN Y+ + RD Sbjct: 56 LKQSLMHLKQSLRSLGADLLLIKAES---TIEALLECIHAIGATKLVYNHLYDPISLVRD 112 Query: 121 KLLEKRL-QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPV 179 ++++L + + +S++ +L P I + + + + + ++ P Sbjct: 113 HSIKQKLMELGMSVQSYNGDLLYKPWDIYDDKGNAFTTFEAYWNKCLSMQMEFVSLLPPW 172 Query: 180 PAIRLTGPVTPSNIPRF--FDYPFQAIDPM----FPIGEQNALHILRKFCKEKVYYYVEQ 233 + G V +I D ++ + + + G NA L +F ++ ++ Y ++ Sbjct: 173 RLVPAAGKVNNCSIEELGLEDESEKSSNALLGRGWSPGWSNADKALTEFIEQHLFDYSKK 232 Query: 234 RDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKS----GAFSWLNELIWRE 289 R TS LSPYL G LS R+ + ++ + + + + S +L + RE Sbjct: 233 RLKVEGNSTSLLSPYLHFGELSVRKVLHSVRMKQLLWVKEGNSVWEESVDLFLRAIGLRE 292 Query: 290 FYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWM 349 + R+L +PS +P + + W+ +AW+QG TG+P++DA MR+L GW+ Sbjct: 293 YSRYLCFNFPS-THERPLLSNLKHFPWHAHHVHFKAWRQGRTGYPLVDAGMRELWATGWI 351 Query: 350 HNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIF 409 HNR+R+I +SF VK LL+ W+ G +YF LLD DL S+ GWQ+ + + D R+ Sbjct: 352 HNRIRVIVSSFAVKFLLLPWKWGMKYFWDTLLDADLESDILGWQYISGSLPDGHELDRLD 411 Query: 410 NPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWL------DKNDLSLNYPLPIVDH 463 +P IQG +DP+G ++RHWLPEL VPT++IH P +L NYP PI++ Sbjct: 412 SPEIQGSNYDPEGEYVRHWLPELARVPTEWIHHPWDAPFTVLKSAGVELGQNYPKPIIEI 471 Query: 464 KKACHH 469 A Sbjct: 472 DLARER 477 >gi|261876463|dbj|BAI47557.1| cryptochrome2 [Glycine max] Length = 600 Score = 384 bits (986), Expect = e-104, Method: Composition-based stats. Identities = 144/481 (29%), Positives = 229/481 (47%), Gaps = 22/481 (4%) Query: 6 AMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASL 65 M+ +VW R DLRI DN AL AA D V V+I P++ Q ++ SL Sbjct: 2 GMNKTIVWFRRDLRIEDNPALAAAAAAKDGSVFPVYIWCPKEEGQFYPGRVSRWWLKQSL 61 Query: 66 LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125 + KSL G + D ++E L + TK+ +N Y+ + RD +++ Sbjct: 62 AHLDKSLKSLGAELMLIKT---DSTLEALLECVNAIQATKVVFNHLYDPVSLVRDHNIKE 118 Query: 126 RLQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL 184 +L I KS++ +L P SI + + + PF + ++A +P I Sbjct: 119 KLVELGISVKSYNGDLLFEPWSIYDETGHAFTTFDPFWNRCLHMQMKA-FSLIPPQLILA 177 Query: 185 TGPVTPSNIPRF--FDYPFQAIDPM----FPIGEQNALHILRKFCKEKVYYYVEQRDIPA 238 G V +I + D ++ + + + G L +F ++ + +Y + R Sbjct: 178 EGKVGKCSIEQLGLEDESEKSSNALLGRAWYPGWNKTDKALTEFVEQHLLHYSKNRLKVG 237 Query: 239 IQGTSQLSPYLSIGVLSPRQCWNRLKEEF----VDLLIKPKSGAFSWLNELIWREFYRHL 294 TS LSPY+ G LS R+ + + + + + A +L + RE+ R+L Sbjct: 238 GDSTSLLSPYIHFGELSVRKVFQLARTKQILWANEGNSAGEESATVFLRAIGLREYSRYL 297 Query: 295 MAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLR 354 +PS KP + W D +AW+QG TG+P++DA MR+L GW+HN++R Sbjct: 298 CFNFPSTIE-KPLLGNLAFFPWKTDPANFKAWRQGRTGYPLVDAGMRELWATGWIHNKIR 356 Query: 355 MITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQ 414 +I +SF VK LL+ WR G +YF LLD DL S+ GWQ+ + D R+ +P I Sbjct: 357 VIVSSFAVKMLLIPWRWGMKYFWDTLLDADLESDILGWQYISGCLPDGHKLERLDDPAIH 416 Query: 415 GKRFDPQGTFIRHWLPELNNVPTQYIHAPHSW------LDKNDLSLNYPLPIVDHKKACH 468 G +FDP+G ++R WLPEL +P ++IH P + +L NYP PI+D +A Sbjct: 417 GAKFDPEGEYVRQWLPELARMPAEWIHHPWNAPLTVLRASGVELGQNYPKPIIDIDQARE 476 Query: 469 H 469 Sbjct: 477 Q 477 >gi|298208823|ref|YP_003717002.1| deoxyribodipyrimidine photolyase-class I [Croceibacter atlanticus HTCC2559] gi|83848750|gb|EAP86619.1| deoxyribodipyrimidine photolyase-class I [Croceibacter atlanticus HTCC2559] Length = 434 Score = 384 bits (986), Expect = e-104, Method: Composition-based stats. Identities = 142/474 (29%), Positives = 222/474 (46%), Gaps = 45/474 (9%) Query: 6 AMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASL 65 + V + W R DLR+ DN A D V+ +FI + + + + FI+ +L Sbjct: 2 SKKVSIFWFRRDLRLDDNVGFLEALK-GDYPVLPLFIFDKDILDKLPENDARVTFIFETL 60 Query: 66 LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125 +++K L + D + S ++ ++F NR YE RD +++ Sbjct: 61 QEMRKELQD---DYDSSLAMFHDTPEKVFKSLVKDYQIQEVFTNRDYEPYAKERDTSIKE 117 Query: 126 RL-QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLR-SLPVPAIR 183 L ++ + ++ D V+ ++ Y VYTP++ +N L+ + Sbjct: 118 LLSKNNISFNTYKDQVIFEKDEVVKKDGDPYLVYTPYKNTWKENFKDHTLKIHYTSQHLD 177 Query: 184 LTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS 243 T T + F+ FP + + + Y + R+ PA GTS Sbjct: 178 NTVKNTRLPNVSLSEMGFKKSSISFPEYDTS---------PTLIENYNDTRNFPAKDGTS 228 Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCM 303 LSP+L G + R+ + + + + ++ NELIWREF+ ++ +P + Sbjct: 229 NLSPHLRFGTVGIRKIYKKAIDAKDE----------TFWNELIWREFFMQILYHFPE-TV 277 Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363 F ++IEW + + WK G TG+P++DA MRQLN G MHNR+RM+ SFL K Sbjct: 278 NNAFKKKYDRIEWRNNEDEFEKWKTGTTGYPLVDAGMRQLNETGLMHNRVRMVVGSFLCK 337 Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423 LL+DWR GE YF +LLD +++SN G WQW A +G D+ PYFRIFNPT Q +FD T Sbjct: 338 HLLIDWRWGEAYFAEKLLDYEMSSNVGNWQWVAGSGVDAAPYFRIFNPTTQIDKFDKNKT 397 Query: 424 FIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477 +I HW+ E N + YP +VDHK+A LN Y +A Sbjct: 398 YINHWVKEYN-------------------TNKYPEKMVDHKEARERCLNAYKSA 432 >gi|307825778|ref|ZP_07655994.1| Deoxyribodipyrimidine photo-lyase [Methylobacter tundripaludum SV96] gi|307733086|gb|EFO03947.1| Deoxyribodipyrimidine photo-lyase [Methylobacter tundripaludum SV96] Length = 453 Score = 384 bits (986), Expect = e-104, Method: Composition-based stats. Identities = 161/472 (34%), Positives = 221/472 (46%), Gaps = 28/472 (5%) Query: 8 SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGI-SARQSHFIYASLL 66 S L R DLR+ DN AL A S +VI FI P Q H S F+ S+ Sbjct: 5 STSLFIFRRDLRLQDNTALLEALRLS-GQVIPCFIFDPRQIEPHPYQSKPGLQFMLQSIQ 63 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 +Q+ L G + + + QQ++ +F NR Y RRD L Sbjct: 64 DLQQQLQSAGGKLALYHALPE----QVVRQLVEQQQIQAVFINRDYTPFSRRRDDELAAV 119 Query: 127 LQHRVIC-KSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185 + I + DS+L P + YKV+T F Q V +LP ++ Sbjct: 120 CKQLGIALHTLPDSLLNEPEQAVKMDKTPYKVFTAFYNNAKQFPV-----ALPEVLVKSN 174 Query: 186 GPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245 S +P G + AL IL + Y+ RD PA+ TS+L Sbjct: 175 FLAAASE-FTIDQLDLSVTEPAIKGGRKQALAILDRL--GDYVDYLNTRDFPALDATSKL 231 Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305 S +L G S R+ + + E+ + +L WR+F+ H+ +P V G+ Sbjct: 232 SAHLKFGTCSVREVFYAITEQL--------GSEHPLIRQLYWRDFFTHIAYHFPQV-FGR 282 Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365 F+ + W+ + QAW G TGFPI+DA MR+LN G+MHNR+RMITASFLVKDL Sbjct: 283 AFLEKFADLTWDNNPDYFQAWCDGKTGFPIVDAGMRELNATGYMHNRVRMITASFLVKDL 342 Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425 +DWR GE YF L+D D NNG WQW ASTG D+ PYFRI NP +Q +FD +I Sbjct: 343 HIDWRWGERYFARHLVDYDPCVNNGNWQWTASTGCDAQPYFRILNPWLQQLKFDQDCRYI 402 Query: 426 RHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477 WLPEL P + IH DK + +YP PI+DH + + ++ A Sbjct: 403 YRWLPELQAFPPKTIHQW----DKKHSACSYPAPIIDHARESQLSKARFKEA 450 >gi|294665668|ref|ZP_06730944.1| photolyase [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] gi|292604563|gb|EFF47938.1| photolyase [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] Length = 484 Score = 384 bits (986), Expect = e-104, Method: Composition-based stats. Identities = 152/483 (31%), Positives = 222/483 (45%), Gaps = 17/483 (3%) Query: 4 TTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYA 63 MS +VW R DLR+ DN AL AA I ++I P + + A + + Sbjct: 10 RVRMSYAIVWFRRDLRLEDNPALRAALDAGHHP-IPLYIDAPHEEGEWTPGAASRTWRHR 68 Query: 64 SLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLL 123 SL + +L G +S + LD Q +++NR+YE RD + Sbjct: 69 SLAALDGALRALGSGLVIR----VGNSAQVLDEVIAQTGAVAVYWNRKYEPATQPRDAQI 124 Query: 124 EKRLQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAI 182 ++ L+ R I +S + ++L P + YKV+TPF + L P Sbjct: 125 KRDLRERGIEAQSCNCALLFEPWQLSTQQGGPYKVFTPFWRNAPTQLQLPAAMGAPRSLP 184 Query: 183 RLTGPVTPSNIPRFFDYPF----QAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPA 238 L + + P Q + GE A +L F + Y E RD P Sbjct: 185 PLPASLKTDALDTLQLVPGVQWDQGFWEHWRPGEAGAHEMLEIFIDGALSGYRENRDRPD 244 Query: 239 IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFY 298 GTSQLSP+L G ++P + + L+ + + ++ +L WR+F HL+ + Sbjct: 245 RVGTSQLSPHLHFGEIAPWRIASTLETH---RTARNGAEIDGYVRQLGWRDFAYHLLHHF 301 Query: 299 PSVCMGKPFIPWTEKIEWNK-DSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMIT 357 P + P +W D LQAW++G TG PI+DA MRQL GWMHNR+RMI Sbjct: 302 PD-TTNQNLNPRFAGFDWATVDPVALQAWQRGRTGIPIVDAGMRQLWHTGWMHNRVRMIV 360 Query: 358 ASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKR 417 ASFL K L + W G +F L+D DLA+N GWQW A TG D+ PYFR+FNP Q ++ Sbjct: 361 ASFLCKHLRIHWIEGARWFWDTLVDADLANNTLGWQWVAGTGADAAPYFRVFNPVTQAEK 420 Query: 418 FDPQGTFIRHWLPELNNVPTQYIHAPH-SWLDKNDLSLNY-PLPIVDHKKACHHTLNQYY 475 FDPQ +I W+PEL + + AP L ++ Y PI+ + L Y Sbjct: 421 FDPQAAYITRWVPELGKLAVKERFAPWLHPLSLARVAPQYRRAPIIGLAEGRDAALAAYA 480 Query: 476 AAK 478 ++ Sbjct: 481 KSR 483 >gi|332520706|ref|ZP_08397168.1| Deoxyribodipyrimidine photo-lyase [Lacinutrix algicola 5H-3-7-4] gi|332044059|gb|EGI80254.1| Deoxyribodipyrimidine photo-lyase [Lacinutrix algicola 5H-3-7-4] Length = 434 Score = 384 bits (986), Expect = e-104, Method: Composition-based stats. Identities = 137/475 (28%), Positives = 211/475 (44%), Gaps = 47/475 (9%) Query: 6 AMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASL 65 + +V++ W R DLR+ DN + A ++ V+ +FI E + + + FI+ +L Sbjct: 2 SKTVNIFWFRRDLRLDDNVGFFEALK-AEHPVLPIFIFDSEILDELPENDARVSFIFETL 60 Query: 66 LQVQKSLS-QKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLE 124 ++++L + + I+ S + ++ N YE RD ++ Sbjct: 61 QNMRQTLQDENNSSL----AMFYGKPIDIYKSLIKDYNINTVYTNHDYEPYAKERDSEIQ 116 Query: 125 KRLQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPA-I 182 L+ I K++ D V+ ++ + Y VYTP+ K DL+ + Sbjct: 117 SFLEENKINFKTYKDQVIFEKNEVVKDDGKPYVVYTPYMKKWKAKFKDYDLKIYYTNTFL 176 Query: 183 RLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGT 242 T D F+ + Y R+ PA T Sbjct: 177 NNLIENTRLPNLSLSDIGFKKSSQDIKD---------YTVTPTLIQEYEATRNFPAKDTT 227 Query: 243 SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVC 302 S+L P+L G +S R+ + E ++ + ELIWREF+ ++ +P Sbjct: 228 SRLGPHLRFGTVSVRKMVKKATAENNEI----------FWQELIWREFFMQILWHFPD-T 276 Query: 303 MGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLV 362 F + I+W ++ +AW G TG+P++DA MRQLN G+MHNR+RM+ SFL Sbjct: 277 HKDAFKAKYDNIKWRNNNKEFKAWCDGKTGYPLVDAGMRQLNQTGFMHNRVRMLVGSFLC 336 Query: 363 KDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQG 422 K LL+DWR GE YF +L D D+ASN G WQW A +G D+ PYFRIFNPT Q +FD Sbjct: 337 KHLLIDWRKGEAYFAQKLHDYDMASNVGNWQWVAGSGVDASPYFRIFNPTTQIDKFDKDK 396 Query: 423 TFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477 +I+ W+PE + YP IVDHK+A L Y A Sbjct: 397 KYIKQWIPEFG-------------------TDKYPEKIVDHKEARERCLKVYKDA 432 >gi|86132772|ref|ZP_01051364.1| deoxyribodipyrimidine photo-lyase, class I [Dokdonia donghaensis MED134] gi|85816726|gb|EAQ37912.1| deoxyribodipyrimidine photo-lyase, class I [Dokdonia donghaensis MED134] Length = 436 Score = 384 bits (986), Expect = e-104, Method: Composition-based stats. Identities = 143/477 (29%), Positives = 214/477 (44%), Gaps = 48/477 (10%) Query: 5 TAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYAS 64 + V + W R DLR+ DN A D V+ +FI E + + FIY Sbjct: 2 STKKVTIFWFRRDLRLDDNVGFLEALK-GDYPVLPIFIFDKEILDKLPEDDARVTFIYNE 60 Query: 65 LLQVQKSL-SQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLL 123 L +++ +L ++ + + V + NR YE + RDK + Sbjct: 61 LQKMRDTLQAEHDSSL----AMFYSTPEQIFKELIADYDVQAVITNRDYEPYALERDKKI 116 Query: 124 EKRLQHR-VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAI 182 L+ + +F D V+ I+ Y VYTPF+ + + + Sbjct: 117 ASLLEENDISFTTFKDQVIFEKDEIVKGDGDPYVVYTPFKNKWKATFDEDKDLIIHYTSQ 176 Query: 183 RLTGPVTPSNIP--RFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ 240 L + S +P D F+ P + Y + R+ PA Sbjct: 177 YLDNLIDHSRLPNVTLVDMGFKKSSIEVPD---------YDVTPTLIENYEDTRNFPAQD 227 Query: 241 GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPS 300 GTS+L P+L G +S R+ + + ++ + +ELIWREF+ ++ +P Sbjct: 228 GTSRLGPHLRFGTVSVRKMVKKAIAQTNEV----------FWSELIWREFFMQILYHFPH 277 Query: 301 VCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASF 360 K F ++I+W + + WK G TG+ ++DA MR+LN G+MHNR+RM+TASF Sbjct: 278 -TKDKAFRSKYDRIDWRNNEEEFEKWKNGQTGYALVDAGMRELNATGYMHNRVRMLTASF 336 Query: 361 LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDP 420 L K LL+DWR GE YF +LLD D++SN G WQWAA +G D+ PYFRIFNP Q +FD Sbjct: 337 LCKHLLIDWRWGETYFAEKLLDYDMSSNVGNWQWAAGSGVDAAPYFRIFNPMTQVDKFDK 396 Query: 421 QGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477 Q +I W+PEL + YP +VDHK+A L Y A Sbjct: 397 QKEYINKWVPELQELS-------------------YPDKMVDHKEARERCLKTYKEA 434 >gi|284034972|ref|YP_003384902.1| deoxyribodipyrimidine photo-lyase [Spirosoma linguale DSM 74] gi|283814265|gb|ADB36103.1| Deoxyribodipyrimidine photo-lyase [Spirosoma linguale DSM 74] Length = 438 Score = 384 bits (986), Expect = e-104, Method: Composition-based stats. Identities = 167/476 (35%), Positives = 230/476 (48%), Gaps = 48/476 (10%) Query: 6 AMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGIS-ARQSHFIYAS 64 + + LVWLR DLR+ DN ALY A S VI VFI R+ F+ Sbjct: 2 SEPLSLVWLRRDLRLHDNAALYYALK-SGRPVIPVFIFDRVILDALDDRLDRRVEFLVQE 60 Query: 65 LLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLE 124 + ++ L++ G D E +++Y + +F N YE RDK + Sbjct: 61 VNRLHDELAKLGSTIIVRYGKPVDVWKELIETYT----IGDVFTNHDYEGYAKERDKAIG 116 Query: 125 KRLQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIR 183 + L R I + D + +L+ Y V+TP+ + L L+S P Sbjct: 117 ELLAERGIGFHTSKDQAIFERDEVLSGKKTPYTVFTPYSRKWKDTLTDFYLKSYPTENYS 176 Query: 184 LTGPVT-PSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ-G 241 T P D FQ + FP E + +L Y E RD PA+ Sbjct: 177 SHYWQTKPEPAITLADMGFQPVGEPFPA-ETVSDKLLDT--------YNETRDFPALPHS 227 Query: 242 TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSV 301 TSQLS +L G +S R+ + K ++LNEL WR+FY ++ +P V Sbjct: 228 TSQLSIHLRFGTISIRELARQAKAA----------DDQTFLNELCWRDFYFQVLDHFPHV 277 Query: 302 CMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFL 361 F ++IEW + W +G TG+PI+DA MRQLNTIGWMHNR+RMITASFL Sbjct: 278 -EQYSFRREYDQIEWRNNEDEFDKWCRGETGYPIVDAGMRQLNTIGWMHNRVRMITASFL 336 Query: 362 VKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQ 421 K LL+DWR GE YF +L D DL++NNGGWQWAA +G D+ PYFR+FNPT Q +RFDP+ Sbjct: 337 CKHLLIDWRWGEAYFGKKLRDYDLSANNGGWQWAAGSGTDAAPYFRVFNPTAQAQRFDPK 396 Query: 422 GTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477 +IR W+PE++ +YP P+VDH A ++ Y A Sbjct: 397 SVYIRQWVPEVDK-------------------PSYPKPMVDHAMARQRAIDTYRKA 433 >gi|255037995|ref|YP_003088616.1| Deoxyribodipyrimidine photo-lyase [Dyadobacter fermentans DSM 18053] gi|254950751|gb|ACT95451.1| Deoxyribodipyrimidine photo-lyase [Dyadobacter fermentans DSM 18053] Length = 442 Score = 383 bits (985), Expect = e-104, Method: Composition-based stats. Identities = 158/484 (32%), Positives = 245/484 (50%), Gaps = 47/484 (9%) Query: 1 MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQ-HGISARQSH 59 M T + + W R DLR+ DN LY A S V+ +FI + + Sbjct: 1 MGLKTKDKIAIFWFRRDLRLHDNAGLYYALR-SGYPVVPLFIFDRNILDDLEEKTDARLT 59 Query: 60 FIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRR 119 FI+ ++ +++++L QK + + ++ + +++ N YE R Sbjct: 60 FIHKAVSEIRQALRQKEADIMVE----YGFPEKIWENLVAGHDIAEVYTNTDYEPYATDR 115 Query: 120 DKLLEKRLQHR-VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLP 178 DK + + L+ + ++ K+ D V+ IL+ Y V+TP+ +A Q L L+S P Sbjct: 116 DKAIYRILKQKDIVFKTCKDQVIFEKQEILSGQGSPYTVFTPYSRAWKQKLNDFYLKSYP 175 Query: 179 VPAI-RLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIP 237 R S +P + F+ D FP + Y ++RD P Sbjct: 176 TKKYFRHFHQWHGSALPSLREMGFEKTDYDFPP---------ADVDDTLLKNYAKERDFP 226 Query: 238 AIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAF 297 A++ TS++ +L G +S R DL + ++ + ++LNELIWR+FY+ +++ Sbjct: 227 AMEATSRIGVHLRFGTVSIR-----------DLARQARAHSDTFLNELIWRDFYQQILSN 275 Query: 298 YPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMIT 357 +P V G F + I+W D + W +G TG+P++DA MRQLN IG+MHNR+RM+T Sbjct: 276 FPHVGKGDAFRKAYDLIKWRYDKADFKKWCEGKTGYPLVDAGMRQLNAIGFMHNRVRMVT 335 Query: 358 ASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKR 417 ASFL K LL+DWR+GE YF +LLD DLA+NNGGWQWAA +G D+ PYFRIFNP Q ++ Sbjct: 336 ASFLSKHLLIDWRLGEAYFAQKLLDYDLAANNGGWQWAAGSGTDAAPYFRIFNPASQAEK 395 Query: 418 FDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477 FDP+ +I+ W+PE + YP P+VDHK+A L Y A Sbjct: 396 FDPKMEYIKKWVPEFG-------------------TDEYPEPMVDHKEARERCLQAYKTA 436 Query: 478 KKQS 481 ++ Sbjct: 437 LDKA 440 >gi|78066957|ref|YP_369726.1| deoxyribodipyrimidine photo-lyase type I [Burkholderia sp. 383] gi|77967702|gb|ABB09082.1| deoxyribodipyrimidine photo-lyase type I [Burkholderia sp. 383] Length = 518 Score = 383 bits (985), Expect = e-104, Method: Composition-based stats. Identities = 149/479 (31%), Positives = 236/479 (49%), Gaps = 23/479 (4%) Query: 2 KATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFI 61 A ++++ +VW R+DLR+TD AL A S ++ VF+ + ++ Sbjct: 28 PAKSSVAPAIVWFRDDLRVTDQPALTRAVE-SGRPLVCVFVDDTGDGAGRALGGAARWWL 86 Query: 62 YASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDK 121 + SL + +L++ G + D+ ++ +++NR+Y + D Sbjct: 87 HGSLAGLDAALARHGGRLLLLRG----DAQREIERVVHDTGAEAVYWNRRYAQPQRDADA 142 Query: 122 LLEKRLQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVP 180 L+ L+ R + +S + S+L P +L + Y+V+T + +A ++ A P Sbjct: 143 ALKASLKARGVTVESSNGSLLNEPWEVLTGSGGPYQVFTAYWRAARRDRTVAVPLPEPER 202 Query: 181 AIRLTGPVTPSNIPRFFD-YPFQAIDPMFPIG---------EQNALHILRKFCKEKVYYY 230 P + D + P + G E A L F + Y Sbjct: 203 IAFHPWPKAVRDCALALDVLALRPPVPDWAGGLRDAWPAPDEAGAHARLDAFLTASLAGY 262 Query: 231 VEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREF 290 + RD+P TS+LSP+L G LSPRQ W+ ++ + A +L+EL WREF Sbjct: 263 ADARDLPDRPATSRLSPFLRFGNLSPRQVWHAVQGAANAGGAAVAADADKFLSELGWREF 322 Query: 291 YRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMH 350 L+ +P++ F + + W D L+AW++G TG+P++DA +R+L T GWMH Sbjct: 323 SYTLLYHFPALASDN-FRAQFDAMPWRDDPAALRAWQRGRTGYPLVDAGLRELWTTGWMH 381 Query: 351 NRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFN 410 NR+RM+ ASFL+K LL+DWR GE +F L+D D A+N WQW A G D+ PYFRIFN Sbjct: 382 NRVRMVVASFLIKHLLIDWRAGEAWFWDTLVDADPANNAASWQWVAGCGADAAPYFRIFN 441 Query: 411 PTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSW------LDKNDLSLNYPLPIVDH 463 P QG++FDP G ++R W+PEL + IHAP L ++YP P+V+H Sbjct: 442 PVAQGQKFDPDGAYVRRWVPELAGLDNASIHAPWEASPLELDAAGVRLGVDYPAPLVEH 500 >gi|58039440|ref|YP_191404.1| deoxyribodipyrimidine photolyase [Gluconobacter oxydans 621H] gi|58001854|gb|AAW60748.1| Deoxyribodipyrimidine photolyase [Gluconobacter oxydans 621H] Length = 479 Score = 383 bits (984), Expect = e-104, Method: Composition-based stats. Identities = 151/484 (31%), Positives = 232/484 (47%), Gaps = 27/484 (5%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 +VW R+DLR+ D+ AL+ A S +I ++I H + A ++ +L + Sbjct: 8 PAIVWFRDDLRMADHPALHEAAA-SGWPLICLYILDDVTPALHPLGAAARWWLRGALADL 66 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128 +++L ++G S + + L Q + ++ + E +D + + L+ Sbjct: 67 RRNLEKQGGTLLTLSGS----AEKLLPQLAKQTDAASVHWHHRLHERERAQDNRIRRTLE 122 Query: 129 HR-VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRS--------LPV 179 + + +VL+ P ++ YKV F KAL + V L + +P Sbjct: 123 EQECEVHAQWGTVLVDPDTVQTKQGGFYKVCGSFWKALQTHAVPEPLEAPSRLSFHAIPA 182 Query: 180 PAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAI 239 + S P+ D+ + GE L F K V Y RD A Sbjct: 183 SVLSDARLNEDSLCPQAPDW-AAGFRKTWEPGEAEGQEHLEDFLKNSVAGYPRGRDRVAE 241 Query: 240 QGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYP 299 +GTS+LSPYL+ G +SPRQ W L++ G +L+EL WREF R+ + P Sbjct: 242 EGTSRLSPYLASGAVSPRQVWAALQKHGA-----HTDGPRIFLSELGWREFARYTLYHLP 296 Query: 300 SVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITAS 359 + P + W + + L+AW++G TG PI+DA MRQL GWMHNR RMI S Sbjct: 297 KLPFEN-LSPKFSGMHWRRSAADLKAWQRGQTGVPIVDAGMRQLWQTGWMHNRARMIVGS 355 Query: 360 FLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFD 419 FL K LL+DW+ G+ +F L+D D A+N WQW A TG ++ P+FRIFNPT Q ++FD Sbjct: 356 FLTKHLLIDWKEGDAWFRDTLVDADFANNAMNWQWVAGTGIEATPFFRIFNPTRQAEKFD 415 Query: 420 PQGTFIRHWLPELNNVPTQYIHAPHSWLDKN------DLSLNYPLPIVDHKKACHHTLNQ 473 P G +IR W+PEL + + + P + D+ L +YP PIVD K+ L Sbjct: 416 PNGDYIRQWVPELRRLSGKALFEPWAAKDEELEKAGVRLGKSYPRPIVDLKEGRDRALQA 475 Query: 474 YYAA 477 + + Sbjct: 476 FRSL 479 >gi|304571332|dbj|BAJ15784.1| cryptochrome2 [Cardamine nipponica] gi|304571336|dbj|BAJ15786.1| cryptochrome2 [Cardamine nipponica] gi|304571338|dbj|BAJ15787.1| cryptochrome2 [Cardamine nipponica] gi|304571340|dbj|BAJ15788.1| cryptochrome2 [Cardamine nipponica] Length = 590 Score = 383 bits (984), Expect = e-104, Method: Composition-based stats. Identities = 134/485 (27%), Positives = 222/485 (45%), Gaps = 24/485 (4%) Query: 17 DLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQKSLSQKG 76 DLRI DN AL AA H V VFI PE+ Q ++ SL + +SL G Sbjct: 1 DLRIEDNPALAAAAHEG--SVFPVFIWCPEEEGQFYPGRASRWWLKQSLSHLSQSLKALG 58 Query: 77 IVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHRVI-CKS 135 + N ++ + TK+ +N Y+ + RD ++++L I +S Sbjct: 59 SELTLIKTHN---TVSAILDCIRVTGATKVVFNHLYDPVSLVRDHTVKEKLVEVGISVQS 115 Query: 136 FDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPSNIPR 195 F+ +L P I + + ++ + K ++ +++ + P + +T Sbjct: 116 FNGDLLYEPWEIYCEKGKPFTSFSSYWKKCLEMSIESVMLPPPWRLMPVTAAAEAVWACS 175 Query: 196 FFDYPFQA---------IDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246 + + + + G NA IL +F ++++ Y + TS LS Sbjct: 176 IEELGLENEAEKPSNALLTRAWSPGWSNADKILNEFIEKQLIDYAKNSKKVVGNSTSLLS 235 Query: 247 PYLSIGVLSPRQCWN--RLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304 PYL G +S R+ + R+K+ + A +L + RE+ R++ +P Sbjct: 236 PYLHYGEISVRRVFQCARMKQIIWAKNSEGDESADLFLKGIGLREYSRYICFNFP-FTHE 294 Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364 + + W+ D +AW+QG TG+P++DA MR+L GW+HNR+R+I +SF VK Sbjct: 295 QSLLSHLRFFPWDADVEKFKAWRQGRTGYPLVDAGMRELWATGWVHNRIRVIVSSFAVKF 354 Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424 LL+ W+ G +YF LLD DL + GWQ+ + + D R+ NP IQG +FDP+G + Sbjct: 355 LLLPWKWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELDRLDNPAIQGAKFDPEGDY 414 Query: 425 IRHWLPELNNVPTQYIHAPHSW------LDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478 IR WLPEL +P+++IH P +L NY PIVD A + Sbjct: 415 IRQWLPELARLPSEWIHHPWDAPLTVLKASGVELGTNYAKPIVDIDTARELLTKAIARTR 474 Query: 479 KQSLL 483 + ++ Sbjct: 475 EAQIM 479 >gi|304571334|dbj|BAJ15785.1| cryptochrome2 [Cardamine nipponica] Length = 590 Score = 383 bits (984), Expect = e-104, Method: Composition-based stats. Identities = 134/485 (27%), Positives = 222/485 (45%), Gaps = 24/485 (4%) Query: 17 DLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQKSLSQKG 76 DLRI DN AL AA H V VFI PE+ Q ++ SL + +SL G Sbjct: 1 DLRIEDNPALAAAAHEG--SVFPVFIWCPEEEGQFYPGRASRWWLKQSLSHLSQSLKALG 58 Query: 77 IVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHRVI-CKS 135 + N ++ + TK+ +N Y+ + RD ++++L I +S Sbjct: 59 SELTLIKTHN---TVSAILDCIRVTGATKVVFNHLYDPVSLVRDHTVKEKLVEVGISVQS 115 Query: 136 FDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPSNIPR 195 F+ +L P I + + ++ + K ++ +++ + P + +T Sbjct: 116 FNGDLLYEPWEIYCEKGKPFTSFSSYWKKCLEMSIESVMLPPPWRLMPVTAATEAVWACS 175 Query: 196 FFDYPFQA---------IDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246 + + + + G NA IL +F ++++ Y + TS LS Sbjct: 176 IEELGLENEAEKPSNALLTRAWSPGWSNADKILNEFIEKQLIDYAKNSKKVVGNSTSLLS 235 Query: 247 PYLSIGVLSPRQCWN--RLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304 PYL G +S R+ + R+K+ + A +L + RE+ R++ +P Sbjct: 236 PYLHYGEISVRRVFQCARMKQIIWAKNSEGDESADLFLKGIGLREYSRYICFNFP-FTHE 294 Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364 + + W+ D +AW+QG TG+P++DA MR+L GW+HNR+R+I +SF VK Sbjct: 295 QSLLSHLRFFPWDADVEKFKAWRQGRTGYPLVDAGMRELWATGWVHNRIRVIVSSFAVKF 354 Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424 LL+ W+ G +YF LLD DL + GWQ+ + + D R+ NP IQG +FDP+G + Sbjct: 355 LLLPWKWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELDRLDNPAIQGAKFDPEGDY 414 Query: 425 IRHWLPELNNVPTQYIHAPHSW------LDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478 IR WLPEL +P+++IH P +L NY PIVD A + Sbjct: 415 IRQWLPELARLPSEWIHHPWDAPLTVLKASGVELGTNYAKPIVDIDTARELLTKAIARTR 474 Query: 479 KQSLL 483 + ++ Sbjct: 475 EAQIM 479 >gi|304571328|dbj|BAJ15782.1| cryptochrome2 [Cardamine nipponica] gi|304571330|dbj|BAJ15783.1| cryptochrome2 [Cardamine nipponica] Length = 590 Score = 383 bits (983), Expect = e-104, Method: Composition-based stats. Identities = 134/485 (27%), Positives = 222/485 (45%), Gaps = 24/485 (4%) Query: 17 DLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQKSLSQKG 76 DLRI DN AL AA H V VFI PE+ Q ++ SL + +SL G Sbjct: 1 DLRIEDNPALAAAAHEG--SVFPVFIWCPEEEGQFYPGRASRWWLKQSLSHLSQSLRALG 58 Query: 77 IVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHRVI-CKS 135 + N ++ + TK+ +N Y+ + RD ++++L I +S Sbjct: 59 SELTLIKTHN---TVSAILDCIRVTGATKVVFNHLYDPVSLVRDHTVKEKLVEVGISVQS 115 Query: 136 FDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPSNIPR 195 F+ +L P I + + ++ + K ++ +++ + P + +T Sbjct: 116 FNGDLLYEPWEIYCEKGKPFTSFSSYWKKCLEMSIESVMLPPPWRLMPVTAAAEAVWACS 175 Query: 196 FFDYPFQA---------IDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246 + + + + G NA IL +F ++++ Y + TS LS Sbjct: 176 IEELGLENEAEKPSNALLTRAWSPGWSNADKILNEFIEKQLIDYAKNSKKVVGNSTSLLS 235 Query: 247 PYLSIGVLSPRQCWN--RLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304 PYL G +S R+ + R+K+ + A +L + RE+ R++ +P Sbjct: 236 PYLHYGEISVRRVFQCARMKQIIWAKNSEGDESADLFLKGIGLREYSRYICFNFP-FTHE 294 Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364 + + W+ D +AW+QG TG+P++DA MR+L GW+HNR+R+I +SF VK Sbjct: 295 QSLLSHLRFFPWDADVEKFKAWRQGRTGYPLVDAGMRELWATGWVHNRIRVIVSSFAVKF 354 Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424 LL+ W+ G +YF LLD DL + GWQ+ + + D R+ NP IQG +FDP+G + Sbjct: 355 LLLPWKWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELDRLDNPAIQGAKFDPEGDY 414 Query: 425 IRHWLPELNNVPTQYIHAPHSW------LDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478 IR WLPEL +P+++IH P +L NY PIVD A + Sbjct: 415 IRQWLPELARLPSEWIHHPWDAPLTVLKASGVELGTNYAKPIVDIDTARELLTKAIARTR 474 Query: 479 KQSLL 483 + ++ Sbjct: 475 EAQIM 479 >gi|182414480|ref|YP_001819546.1| deoxyribodipyrimidine photo-lyase [Opitutus terrae PB90-1] gi|177841694|gb|ACB75946.1| Deoxyribodipyrimidine photo-lyase [Opitutus terrae PB90-1] Length = 501 Score = 383 bits (983), Expect = e-104, Method: Composition-based stats. Identities = 158/499 (31%), Positives = 242/499 (48%), Gaps = 32/499 (6%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIAT-----PEQWRQHG-------IS 54 M+ L+W R DLR+ DN AL+AA VI V++ P Sbjct: 1 MTPTLLWFRQDLRLQDNPALHAALARG-GPVIPVYVWEESCESPAAEGARANDGWAAQPG 59 Query: 55 ARQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEI 114 A +++ SL + ++ ++G + D + L +++NR+YE Sbjct: 60 AASRWWLHHSLEALDAAVRERGGRLILRRG----DPLAELQEIVRATGAKGVYWNRRYEP 115 Query: 115 NEVRRDKLLEKRLQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQAD 173 RD ++ L + K+F+ ++L P +ILN ++V++ + + + V A Sbjct: 116 AARARDARVQTELAAAGLDVKTFNSALLNEPETILNKQGGPFQVFSAYWRHCLTLPVAAP 175 Query: 174 LRSLPVPAIRLTGPVTPSNIPRFFDYPFQAID----PMFPIGEQNALHILRKFCKEKVYY 229 + P ++ P A D + GE +A + +F + Sbjct: 176 RKLPAGPIPAPERWPRSLDVAALELRPRVAWDRGLAQAWTPGEASAAKRMTRFVAGAIDR 235 Query: 230 YVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLI-KPKSGAFSWLNELIWR 288 Y E+RD P GTS LS L G +SPRQ W ++ + + P +GA +L EL WR Sbjct: 236 YDEERDFPGCDGTSMLSAALHWGEISPRQLWAAVRGRSRESGVFPPSNGARIFLAELGWR 295 Query: 289 EFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSH--LLQAWKQGYTGFPIIDAAMRQLNTI 346 EF HL+ +P +P + W +D L+AW++G TG+PI+DA MRQL Sbjct: 296 EFAYHLLWHFPHTIE-QPLRRAFARFSWAEDPEGRRLRAWQRGQTGYPIVDAGMRQLWQT 354 Query: 347 GWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYF 406 GWMHNR+RMI ASFLVK L + W G +F L+D DLA+N GWQW+A G D+ PYF Sbjct: 355 GWMHNRVRMIVASFLVKHLRLSWPHGATWFWDTLVDADLANNTLGWQWSAGCGADAAPYF 414 Query: 407 RIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKN------DLSLNYPLPI 460 RIF P +QG++FD G ++R W+PEL +P +++HAP + + L NYP P+ Sbjct: 415 RIFAPVLQGRKFDSDGVYVRRWVPELARLPDRFLHAPWTATAQTLAAAGVRLGENYPRPV 474 Query: 461 VDHKKACHHTLNQYYAAKK 479 VDH A L + ++ Sbjct: 475 VDHAAARAEALAAFRQLRE 493 >gi|71084006|ref|YP_266726.1| deoxyribodipyrimidine photo-lyase [Candidatus Pelagibacter ubique HTCC1062] gi|71063119|gb|AAZ22122.1| Deoxyribodipyrimidine photolyase (DNA photolyase) (Photoreactivating enzyme) [Candidatus Pelagibacter ubique HTCC1062] Length = 473 Score = 383 bits (983), Expect = e-104, Method: Composition-based stats. Identities = 151/483 (31%), Positives = 243/483 (50%), Gaps = 26/483 (5%) Query: 10 HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69 +VW+R D RI N+AL A N + V A++I P+ + + + Q ++ SL + Sbjct: 5 AIVWIREDFRIEYNEALATATQNHEY-VSAIYIYNPKNFDKKREA--QKWWLSKSLENLS 61 Query: 70 KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL-Q 128 L + I + D +E L + VT +++++ YE + + + K + + Sbjct: 62 IDLKKLNITLEVQ----LGDELEVLSILKKKDDVT-VYWSKVYEPDVINKGKKIRDLFIK 116 Query: 129 HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188 + + K F ++L+ + YKV+TPF K Q+ + L ++ Sbjct: 117 NEIQYKYFKGNILVEFQEMTKDDGTPYKVFTPFWKKTEQHYISKAPSKLIRVKSKIKKIN 176 Query: 189 TPSNIPRFFDY-----PFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS 243 N + + + + E+ A L++ K+ Y + RDIP + GTS Sbjct: 177 IFKNSISIKEILPKKNWHKKFEKYWDPSEKEAKKYLQELINNKIEDYGDARDIPGVNGTS 236 Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCM 303 +LSP+L G + W + ++ V K G ++NEL WREF L+ ++P + Sbjct: 237 KLSPFLKFGQIHVETIWKKCQDIKVK-----KIGYRKYINELGWREFSHSLINYFPQMLK 291 Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363 G + W K+ L+AWK G TG+PI+DA MR+L GWMHNR+RMI ASFLVK Sbjct: 292 GN-LRKDFDNFPWVKNDKFLKAWKAGMTGYPIVDAGMRELYETGWMHNRVRMIVASFLVK 350 Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423 L + W GE++F + L+D + ASN WQW A G D+ PYFRIFNP +QG++FD G Sbjct: 351 HLRIHWMEGEKHFKNCLVDYNEASNVAQWQWVAGCGADAAPYFRIFNPILQGEKFDKDGI 410 Query: 424 FIRHWLPELNNVPTQYIHAPHSWLDKND------LSLNYPLPIVDHKKACHHTLNQYYAA 477 + + W+PEL N+P ++++ P K + +NYP PI+DH +A + L+ + Sbjct: 411 YTKKWVPELKNMPNKFLYKPWELETKYQEQIKVIVGINYPKPIIDHVEARNAALDAFKTI 470 Query: 478 KKQ 480 KK Sbjct: 471 KKN 473 >gi|326794343|ref|YP_004312163.1| deoxyribodipyrimidine photo-lyase [Marinomonas mediterranea MMB-1] gi|326545107|gb|ADZ90327.1| Deoxyribodipyrimidine photo-lyase [Marinomonas mediterranea MMB-1] Length = 497 Score = 383 bits (983), Expect = e-104, Method: Composition-based stats. Identities = 184/497 (37%), Positives = 260/497 (52%), Gaps = 31/497 (6%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAK---------------------VIAVFIATP 45 M+ LVWLRNDLR+TD+ ALY A A+ V V TP Sbjct: 1 MATQLVWLRNDLRLTDHPALYGASDMGGAQSITTASEKADSTAASTTTTPDVHIVICMTP 60 Query: 46 EQWRQHGISARQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTK 105 EQW H SA + A + + K QKGI+ + F + L C + Sbjct: 61 EQWCAHSESAAKQSLRVALIDALGKECEQKGIMLHTLHLNTFSECAPALLDLCQSLKCES 120 Query: 106 LFYNRQYEINEVRRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKAL 165 +++ + +E +RD +E+ L + L+ +LN+ +KV+TP+ + Sbjct: 121 IWWQSELPFDEQQRDSQVERLLSEHGVTVHHLAPDLIVSQPLLNNQGTPFKVFTPYYRRW 180 Query: 166 IQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAI------DPMFPIGEQNALHIL 219 I+ L S P + G N + + D ++P + L Sbjct: 181 IEILKSNAFYSYPEMPSKAKGTYGDVNHSTAINISNEYFANERYRDDIWPANYAHIKETL 240 Query: 220 RKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAF 279 FC K Y R+IP+ GTS LSPYL++G + PR+ + LK + + + Sbjct: 241 DSFCSLKEADYEAVREIPSTAGTSLLSPYLALGAVGPRELLSALKNGY-QIREEGYWADS 299 Query: 280 SWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAA 339 WL EL WR+FY+ LM +P + M + F P TE+I W+K+ QAW G TGFPI+DAA Sbjct: 300 IWLKELAWRDFYKQLMWHFPRLSMRQAFKPETEQIIWSKNDTHFQAWCDGQTGFPIVDAA 359 Query: 340 MRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTG 399 MRQLN GWMHNRLRMITASFL K L +DWR GE+YFMS+L+DG+ A+NNGGWQW+ASTG Sbjct: 360 MRQLNQTGWMHNRLRMITASFLTKLLFIDWRKGEDYFMSKLIDGEFAANNGGWQWSASTG 419 Query: 400 NDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLP 459 D+VPYFR+FNPT Q + +D G FIR ++PEL+ + + IH+P + YP P Sbjct: 420 CDAVPYFRVFNPTRQSETYDTNGHFIRRFVPELSALSDKEIHSPSV---SHRQQCRYPEP 476 Query: 460 IVDHKKACHHTLNQYYA 476 I+D+K A H ++ + Sbjct: 477 IIDYKSARKHAIDAFAE 493 >gi|126658972|ref|ZP_01730114.1| probable bacterial cryptochrome [Cyanothece sp. CCY0110] gi|126619770|gb|EAZ90497.1| probable bacterial cryptochrome [Cyanothece sp. CCY0110] Length = 486 Score = 382 bits (982), Expect = e-104, Method: Composition-based stats. Identities = 130/488 (26%), Positives = 226/488 (46%), Gaps = 31/488 (6%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQ-----HGISARQSHFIYASL 65 L+W RNDLRI D++ LY D VI + Q++ + F+ S+ Sbjct: 7 LIWYRNDLRIHDHEPLYQGIKEGD-LVIPFYCFDIRQFQTTSYAFPKTGNFRGQFLLESV 65 Query: 66 LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125 +++SL G + + + + + ++++ + E + +K +++ Sbjct: 66 ANLRQSLQDLGSDLIVRKG----YPEKIIPELIKELEIDAVYFHEEVTSEETKVEKKVKQ 121 Query: 126 RLQH-RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL 184 L+ +V F + L + Q+ +V+T FRK + +N P + L Sbjct: 122 ALKPLKVKVPGFWGATLYHWNDLPFEVNQLPEVFTSFRKKVEKNSTVNPTLITPRKLLSL 181 Query: 185 TGPVTPSNIPRFFDYPFQAIDPM------FPIGEQNALHILRKFCKEKV--YYYVEQRD- 235 V NIP + + D F GE + L+ + E+ Y E R+ Sbjct: 182 PD-VEIGNIPSLEELGLKKSDSDSRGVLNFKGGETAGIKRLQDYFWERNCLKEYKETRNG 240 Query: 236 IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLM 295 + +S+ SP+L+ G LSPR + +++ + + + + + EL+WR+++R + Sbjct: 241 MLGADYSSKFSPWLAHGCLSPRYIYEEVQKYEEERV--KNNSTYWLIFELLWRDYFRFIC 298 Query: 296 AFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRM 355 A + + K + + I W +D W++G TG+P++DA MR++ G+M NR R Sbjct: 299 AKHGNKIFYKSGLQGLD-IPWKEDQDRFILWQEGKTGYPLVDANMREIAATGFMSNRGRQ 357 Query: 356 ITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQG 415 ASFL K+L ++W +G E+F S L+D D+ SN G W + A GND+ FR FN Q Sbjct: 358 NVASFLTKNLGINWIMGAEWFESLLIDYDVCSNYGNWNYTAGVGNDARG-FRYFNIPKQS 416 Query: 416 KRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND------LSLNYPLPIVDHKKACHH 469 K +D +G ++RHWLPEL +P IH P + ++YP P+VD K+ Sbjct: 417 KDYDSKGDYLRHWLPELKMIPGDKIHEPWKLSQDEQKRYNVRIGVDYPKPVVDFFKSVKA 476 Query: 470 TLNQYYAA 477 Y +A Sbjct: 477 NEKVYNSA 484 >gi|332662341|ref|YP_004445129.1| Deoxyribodipyrimidine photo-lyase [Haliscomenobacter hydrossis DSM 1100] gi|332331155|gb|AEE48256.1| Deoxyribodipyrimidine photo-lyase [Haliscomenobacter hydrossis DSM 1100] Length = 449 Score = 382 bits (982), Expect = e-104, Method: Composition-based stats. Identities = 158/492 (32%), Positives = 228/492 (46%), Gaps = 63/492 (12%) Query: 8 SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGIS-ARQSHFIYASLL 66 ++ L W R DLR+ DN LY A S+ V+ +FI E + + F++ + Sbjct: 3 AITLFWFRRDLRLQDNAGLYHALK-SNFPVLPLFIFDTEILDELDDPEDARVAFLHQRIT 61 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 ++Q L G + E L Y V +++ N YE ++RD+ ++ Sbjct: 62 ELQAELEHLGSSMLVRYGKPAEVWPEILQDYL----VAEVYTNHDYEPRAIQRDEAVQNL 117 Query: 127 L-QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKAL---------------IQNLV 170 L Q + SF D V+ + + Y V+TP+ + I+ ++ Sbjct: 118 LAQQNIPYFSFKDQVIFEKLEVTKLDGKPYTVFTPYSRMWKNCLASQMETIQENGIEQVI 177 Query: 171 QADLRSLPVPAIRLTGPVT-PSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYY 229 L+ P T P +P FQ P + + Sbjct: 178 SFFLKPYPTEKYYPNFWQTAPPPLPALSAMGFQPSSIAIPP---------TTVSRGLIKQ 228 Query: 230 YVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWRE 289 Y + RD P + GTS+L + G +S R+ R E ++LNELIWR+ Sbjct: 229 YDKTRDFPYLNGTSRLGIHFRFGTISIREKARRALELN-----------ETFLNELIWRD 277 Query: 290 FYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWM 349 FY ++ +P V + F P ++IEW D + W G TG+PI+DA +R+LN G+M Sbjct: 278 FYAQILFNFPHVA-QRSFRPEYDQIEWRNDEDEFEKWCAGKTGYPIVDAGLRELNATGYM 336 Query: 350 HNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIF 409 HNR+RMITASFL K LL+DWR GE YF +LLD DLASNNGGWQWAA G D+ PYFR+F Sbjct: 337 HNRVRMITASFLTKHLLIDWRWGEAYFAKKLLDYDLASNNGGWQWAAGCGTDAAPYFRVF 396 Query: 410 NPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHH 469 +P Q ++FDP+ ++R W+PE + YP PIVDHK A Sbjct: 397 SPAAQQEKFDPEYKYVRKWVPEYG-------------------TDAYPKPIVDHKFARER 437 Query: 470 TLNQYYAAKKQS 481 L Y AA K Sbjct: 438 CLEVYKAALKGG 449 >gi|170733532|ref|YP_001765479.1| deoxyribodipyrimidine photo-lyase [Burkholderia cenocepacia MC0-3] gi|169816774|gb|ACA91357.1| Deoxyribodipyrimidine photo-lyase [Burkholderia cenocepacia MC0-3] Length = 519 Score = 382 bits (982), Expect = e-104, Method: Composition-based stats. Identities = 149/479 (31%), Positives = 235/479 (49%), Gaps = 23/479 (4%) Query: 2 KATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFI 61 A +++ +VW R+DLR+TD AL A S ++ VF+ + ++ Sbjct: 29 SAKPSVAPAIVWFRDDLRVTDQPALTRAVE-SGRPLVCVFVDDTGAGAGPALGGAARWWL 87 Query: 62 YASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDK 121 + SL + +L++ G + D+ ++ +++NR+Y + D Sbjct: 88 HGSLAGLDAALARHGGRLLLLRG----DAQREIERVVGDTGAAAVYWNRRYAQQQRDADA 143 Query: 122 LLEKRLQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVP 180 L+ L+ R + +S + S+L P +L + Y+V+T + +A ++ A P Sbjct: 144 ALKASLKARGVTVESSNGSLLNEPWEVLTGSGGPYQVFTAYWRAARRDRTVAAPLPAPER 203 Query: 181 AIRLTGP----------VTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYY 230 P + P D+ D E AL L +F + Y Sbjct: 204 IAFHPWPKAVRDRALALDALALRPHAPDWAGGLRDAWPAPDEAGALARLDRFLTTSLAGY 263 Query: 231 VEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREF 290 + RD P TS+LSP+L G +SPRQ W+ ++ + A +L+EL WREF Sbjct: 264 ADARDRPDRPATSRLSPFLRFGNVSPRQVWHAVQGAANAGGAAYAAHADKFLSELGWREF 323 Query: 291 YRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMH 350 L+ +P++ F + + W D L+AW++G TG+P++DA +R+L T GWMH Sbjct: 324 SYTLLYHFPALATDN-FRAQFDAMPWRDDPAALRAWQRGRTGYPLVDAGLRELWTTGWMH 382 Query: 351 NRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFN 410 NR+RM+ ASFL+K LL+DWR GE +F L+D D A+N WQW A G D+ PYFRIFN Sbjct: 383 NRVRMVVASFLIKHLLIDWRAGEAWFRDTLVDADPANNAASWQWVAGCGADAAPYFRIFN 442 Query: 411 PTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSW------LDKNDLSLNYPLPIVDH 463 P QG++FDP G ++R W+PEL + IHAP L ++YP P+V+H Sbjct: 443 PVAQGQKFDPGGAYVRRWVPELAGLDDASIHAPWEASPLALEAAGVRLGVDYPAPLVEH 501 >gi|154248595|ref|YP_001419553.1| deoxyribodipyrimidine photo-lyase [Xanthobacter autotrophicus Py2] gi|154162680|gb|ABS69896.1| Deoxyribodipyrimidine photo-lyase [Xanthobacter autotrophicus Py2] Length = 500 Score = 382 bits (981), Expect = e-104, Method: Composition-based stats. Identities = 148/493 (30%), Positives = 229/493 (46%), Gaps = 25/493 (5%) Query: 2 KATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFI 61 + + S L+W R+DLR++DN AL AA + + A+++ + + ++ Sbjct: 18 ASGSPASPSLLWFRDDLRLSDNPAL-AALAEARTPLAALYVLDEDSPGVRPLGGAARWWL 76 Query: 62 YASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDK 121 SL + L +G+ + + + + +N + E R D Sbjct: 77 AQSLRALAADLKDRGVPLILRRGP----ANRVVPEVAALLGAATVAFNDRAGAAETRVDH 132 Query: 122 LLEKRL-QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVP 180 + RL SF +L PPGS+ + M + ++ F +A ++ P Sbjct: 133 AVAARLLSEDRRVLSFCAHLLHPPGSVEGASGGMPRTFSSFHRAALKARRLDTPLPAPK- 191 Query: 181 AIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRK--------FCKEKVYYYVE 232 L G P + + P + G ++A F + Y E Sbjct: 192 --HLDGVAHPPEGETLESFDLEPTHPDWAGGLRSAWTAGEAAAQARLAAFMDAGLAGYAE 249 Query: 233 QRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYR 292 RD P + S+LSP+L G +SPRQ + ++ + P A + EL WREF Sbjct: 250 GRDRPDLNHVSRLSPHLRFGEISPRQILSAVR-HAAEAGAVPLVDADKFEAELYWREFSY 308 Query: 293 HLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNR 352 HL+A P + + W + L+AW +G TG+P++DA +RQL GWMHNR Sbjct: 309 HLLAEMPDLARSN-IQHGFDAFPWRECPGELKAWHKGLTGYPLVDAGLRQLWQTGWMHNR 367 Query: 353 LRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPT 412 +RM+ ASFL K LL+DWR GE++F L+D D A+N WQW A +G D+ PYFRIFNP Sbjct: 368 VRMVVASFLTKHLLIDWRSGEDWFWDTLVDADGANNAASWQWVAGSGLDAAPYFRIFNPV 427 Query: 413 IQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSW----LDKNDLSLN--YPLPIVDHKKA 466 QG++FDP GT++R ++PEL +P IH P + L + L YP P+VDH A Sbjct: 428 TQGEKFDPDGTYVRTFVPELGKLPAPLIHKPWTADAHTLAHAGIRLGHTYPRPLVDHGAA 487 Query: 467 CHHTLNQYYAAKK 479 L + + +K Sbjct: 488 RERALRAFESTRK 500 >gi|225433126|ref|XP_002285169.1| PREDICTED: hypothetical protein [Vitis vinifera] Length = 652 Score = 382 bits (981), Expect = e-104, Method: Composition-based stats. Identities = 139/486 (28%), Positives = 233/486 (47%), Gaps = 26/486 (5%) Query: 1 MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHF 60 M + + +VW R DLR+ DN AL A V+ VFI P++ Q + Sbjct: 1 MSSDSR---TVVWFRRDLRVDDNPALATAAKEG--SVLPVFIWCPKEEGQFYPGRVSRWW 55 Query: 61 IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120 + SL+ +++SL G + + +IE L TKL YN Y+ + RD Sbjct: 56 LKQSLMHLKQSLRSLGADLLLIKAES---TIEALLECIHAIGATKLVYNHLYDPISLVRD 112 Query: 121 KLLEKRL-QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPV 179 ++++L + + +S++ +L P I + + + + + ++ P Sbjct: 113 HSIKQKLMELGMSVQSYNGDLLYKPWDIYDDKGNAFTTFEAYWNKCLSMQMEFVSLLPPW 172 Query: 180 PAIRLTGPVTPSNIPRF--FDYPFQAIDPM----FPIGEQNALHILRKFCKEKVYYYVEQ 233 + G V +I D ++ + + + G NA L +F ++ ++ Y ++ Sbjct: 173 RLVPAAGKVNNCSIEELGLEDESEKSSNALLGRGWSPGWSNADKALTEFIEQHLFDYSKK 232 Query: 234 RDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKS----GAFSWLNELIWRE 289 R TS LSPYL G LS R+ + ++ + + + + S +L + RE Sbjct: 233 RLKVEGNSTSLLSPYLHFGELSVRKVLHSVRMKQLLWVKEGNSVWEESVDLFLRAIGLRE 292 Query: 290 FYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWM 349 + R+L +PS +P + + W+ +AW+QG TG+P++DA MR+L GW+ Sbjct: 293 YSRYLCFNFPS-THERPLLSNLKHFPWHAHHVHFKAWRQGRTGYPLVDAGMRELWATGWI 351 Query: 350 HNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIF 409 HNR+R+I +SF VK LL+ W+ G +YF LLD DL S+ GWQ+ + + D R+ Sbjct: 352 HNRIRVIVSSFAVKFLLLPWKWGMKYFWDTLLDADLESDILGWQYISGSLPDGHELDRLD 411 Query: 410 NPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWL------DKNDLSLNYPLPIVDH 463 +P IQG +DP+G ++RHWLPEL VPT++IH P +L NYP PI++ Sbjct: 412 SPEIQGSNYDPEGEYVRHWLPELARVPTEWIHHPWDAPFTVLKSAGVELGQNYPKPIIEI 471 Query: 464 KKACHH 469 A Sbjct: 472 DLARER 477 >gi|91762930|ref|ZP_01264895.1| Deoxyribodipyrimidine photolyase (DNA photolyase) (Photoreactivating enzyme) [Candidatus Pelagibacter ubique HTCC1002] gi|91718732|gb|EAS85382.1| Deoxyribodipyrimidine photolyase (DNA photolyase) (Photoreactivating enzyme) [Candidatus Pelagibacter ubique HTCC1002] Length = 473 Score = 382 bits (981), Expect = e-104, Method: Composition-based stats. Identities = 152/483 (31%), Positives = 243/483 (50%), Gaps = 26/483 (5%) Query: 10 HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69 +VW+R D RI N+AL A N + V A++I P+ + + + Q ++ SL + Sbjct: 5 AIVWIREDFRIEYNEALATATQNHEY-VSAIYIYNPKNFDKKREA--QKWWLSKSLENLS 61 Query: 70 KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL-Q 128 L + I + D +E L + VT +++++ YE + + + K + + Sbjct: 62 IDLKKLNITLEVQ----LGDELEVLSILKKKDDVT-VYWSKVYEPDVINKGKKIRDLFIK 116 Query: 129 HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188 + + K F ++L+ + YKV+TPF K Q+ + L ++ Sbjct: 117 NEIQYKYFKGNILIEFQEMTKDDGTPYKVFTPFWKKTEQHYISKAPSKLIRVKSKIKKIN 176 Query: 189 TPSNIPRFFDY-----PFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS 243 N + + + + E+ A L++ K+ Y + RDIP + GTS Sbjct: 177 IFKNSISIKEILPKKNWHKKFEKYWDPSEKEAKKYLQELINNKIEDYGDARDIPGVNGTS 236 Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCM 303 +LSP+L G + W + ++ V K G ++NEL WREF L+ ++P + Sbjct: 237 KLSPFLKFGQIHVETIWKKCQDIKVK-----KIGYRKYINELGWREFSHSLINYFPQMLK 291 Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363 G + W K+ L+AWK G TG+PI+DA MR+L GWMHNR+RMI ASFLVK Sbjct: 292 GN-LRKDFDNFPWVKNDKFLKAWKAGMTGYPIVDAGMRELYETGWMHNRVRMIVASFLVK 350 Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423 L + W GE++F + L+D + ASN WQW A G D+ PYFRIFNP +QG++FD G Sbjct: 351 HLRIHWMEGEKHFKNCLVDYNEASNVAQWQWVAGCGADAAPYFRIFNPILQGEKFDKAGI 410 Query: 424 FIRHWLPELNNVPTQYIHAPHSWLDKND------LSLNYPLPIVDHKKACHHTLNQYYAA 477 + + W+PEL N+P ++++ P K + +NYP PIVDH +A + L+ + Sbjct: 411 YTKKWVPELKNMPNKFLYKPWELETKYQEQIKVIVGINYPKPIVDHVEARNAALDAFKTI 470 Query: 478 KKQ 480 KK Sbjct: 471 KKS 473 >gi|83746230|ref|ZP_00943284.1| Deoxyribodipyrimidine photolyase [Ralstonia solanacearum UW551] gi|83727196|gb|EAP74320.1| Deoxyribodipyrimidine photolyase [Ralstonia solanacearum UW551] Length = 560 Score = 382 bits (981), Expect = e-104, Method: Composition-based stats. Identities = 170/490 (34%), Positives = 242/490 (49%), Gaps = 31/490 (6%) Query: 10 HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWR---QHGI-SARQSHFIYASL 65 LVW R DLR D+ AL+ A + +V F+ HG+ + R+ FI A++ Sbjct: 65 GLVWFRRDLRHIDHAALHYALRHC-REVFCAFVFDRGILDPLLAHGLRADRRVEFIRAAV 123 Query: 66 LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125 ++ +L + G D + + S Q V +F N E + RD + Sbjct: 124 EALRGALREAGGELIVLH----DHAHHAIPSLAQQLGVEAVFANHDEEPAALARDAAVRD 179 Query: 126 RLQHR-VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL 184 L + F D V+ +LN + Y V+TP++ A + + DLR+ P+ Sbjct: 180 ALARQPCAWLDFKDQVIFERAEVLNGQGKPYGVFTPYKNAWLAAVSPFDLRAYPIEPHLH 239 Query: 185 TGPVTPSNI----PRFFDYPFQAID---PMFPIGEQNALHILRKFCKEKVYYYVEQRDIP 237 P + P F + P G A +L F ++ Y +RD P Sbjct: 240 ALARPPQGLAPATPSLEAMGFARSNLSAIALPTGMSGAEALLDDF-ATRMDDYHARRDYP 298 Query: 238 AIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAF 297 A++G S LS +L G +S R L ++ GA +WL+ELIWR+FY ++ Sbjct: 299 AVRGPSYLSTHLRFGTVSIRT----LAAHAHAAMLHGSRGAATWLSELIWRDFYFMILHH 354 Query: 298 YPSVCMGKPFIPWTEKIEWNKDSH---LLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLR 354 P + G F P ++I W AW+ TG+P++DAAM Q+ G+MHNRLR Sbjct: 355 RPDLAGGASFRPEFDRIRWVDGDAGDVRFAAWRDARTGYPLVDAAMLQIRQSGYMHNRLR 414 Query: 355 MITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQ 414 M+ ASFL+KDL VDWR GE YF L D D A+NNGGWQWAAS+G D+ P+FRIFNP Q Sbjct: 415 MVAASFLIKDLGVDWRRGEHYFADALNDFDFAANNGGWQWAASSGCDAQPWFRIFNPVTQ 474 Query: 415 GKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDK------NDLSLNYPLPIVDHKKACH 468 ++FDPQG FIR +LP+L +P +Y+HAP + L YP PIV+H A Sbjct: 475 SEKFDPQGHFIRKYLPQLAKLPDRYLHAPWTAPADVLKTAGVALGETYPRPIVEHAAARA 534 Query: 469 HTLNQYYAAK 478 TL +Y AK Sbjct: 535 ATLERYAPAK 544 >gi|222479858|ref|YP_002566095.1| DNA photolyase FAD-binding [Halorubrum lacusprofundi ATCC 49239] gi|222452760|gb|ACM57025.1| DNA photolyase FAD-binding [Halorubrum lacusprofundi ATCC 49239] Length = 514 Score = 382 bits (981), Expect = e-104, Method: Composition-based stats. Identities = 156/515 (30%), Positives = 226/515 (43%), Gaps = 52/515 (10%) Query: 9 VHLVWLRNDLRITDNKALYAAC---HNSDAKVIAVFIATPEQWRQHGISARQSHFIYASL 65 + L W R DLR+ DN L AA + VF+ P+ S + + L Sbjct: 1 MELFWHRRDLRVADNVGLAAATGTRDDGRGPAAPVFVFDPDVLD--HASDVRVRRLLDGL 58 Query: 66 LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125 ++ +G + + L ++ +NR Y RD + Sbjct: 59 AALRDDYRDRGSDLLVARGAPE----TVLPELAAALDAERVVWNRDYSGLARERDAGVRT 114 Query: 126 RLQHRVICKSF-DDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL 184 L I + D+VL P SI +A Y VY+ + K + + + Sbjct: 115 ALNDAGIDREVLHDAVLHTPESIRTNAGDPYSVYSYYWKKWTDRVADPPAPTPDAGDLVD 174 Query: 185 TGPVTPS---------------------NIPRFFDYPFQAIDPMF-PIGEQNALHILRKF 222 G +T + ++P D F + P G + A L F Sbjct: 175 AGDLTAAVGTDGGAETDGGAAIDRVAVGDLPAPADLGFAEPEADVGPAGTEAARDRLDDF 234 Query: 223 CKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIK--------- 273 E V+ Y +RD PA + TS++S +L G + R+ + K+ K Sbjct: 235 LSEAVFSYDAERDYPAREATSRMSAFLKYGEIGVREAYEATKDAMAMAEEKTGERDEGGD 294 Query: 274 --------PKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQA 325 P + + +L WREFY ++ P V + + E I W D + A Sbjct: 295 HEDGDDEGPVAAVEEYQKQLAWREFYTQVLYHNPEVVTEN-YKEYEEGIAWRDDPDEIAA 353 Query: 326 WKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDL 385 WK+G TG+PI+DA MRQL +MHNR+RMI ASFL KDLL DWR G +YF L D D Sbjct: 354 WKRGETGYPIVDAGMRQLREEAFMHNRVRMIVASFLTKDLLADWRHGYDYFRETLADHDT 413 Query: 386 ASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPH- 444 A+++GGWQWAASTG D+ PYFRIFNP QG+R+DP +I+ ++PEL + IH H Sbjct: 414 ANDSGGWQWAASTGTDAQPYFRIFNPMTQGERYDPDAEYIKRYVPELRGLDADLIHEWHE 473 Query: 445 -SWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478 S + + + NYP PIVDH + L Y A+ Sbjct: 474 LSPTQRANAAPNYPAPIVDHSERREEALAMYKRAR 508 >gi|95929775|ref|ZP_01312516.1| Deoxyribodipyrimidine photolyase [Desulfuromonas acetoxidans DSM 684] gi|95134071|gb|EAT15729.1| Deoxyribodipyrimidine photolyase [Desulfuromonas acetoxidans DSM 684] Length = 475 Score = 382 bits (980), Expect = e-104, Method: Composition-based stats. Identities = 150/495 (30%), Positives = 235/495 (47%), Gaps = 34/495 (6%) Query: 1 MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHF 60 M + + V ++W R DLR+ DN AL A VI ++I E + A + Sbjct: 1 MPSAPSAPV-IMWFRQDLRLHDNPALLTATRLG--PVIPIYILDDEHAADQRMGAASRCW 57 Query: 61 IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120 ++ SL + + L +F+ + L+ + +NR YE + RD Sbjct: 58 LHRSLDALNQQLDGHLQLFR-------GPADTLLEQLVQHYDCRTVTWNRCYEPWRINRD 110 Query: 121 KLLEKRLQH-RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPV 179 ++++++LQ + S + S+L P +L Y+++TPF + ++ LP Sbjct: 111 RIIKEKLQGLGITVHSDNGSLLWEPWQVLKRDQTPYQIFTPFYRHARDSVPVR--SPLPR 168 Query: 180 PAIRLTGPVTPSNIPRFFDYPFQAIDPM-------FPIGEQNALHILRKFCKEKVYYYVE 232 PA VTP + + D + P + GE A + F +E++ Y E Sbjct: 169 PAEIALAAVTPYSALKLADLELRPNHPWADKVLHHWQPGEAGAQQRWQTFMEEELLGYGE 228 Query: 233 QRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYR 292 RD+PA S+LSP + G +S Q W+ D A ++ +L WREF Sbjct: 229 GRDLPAQPHVSRLSPAIHWGEISVHQLWH-------DAQAIGHEDALAFQRQLAWREFSV 281 Query: 293 HLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNR 352 + +P + W+ D+ L W+QG TG P +DA MR+L G MHNR Sbjct: 282 TQLFHHPDMDR-INLDRRFNLFPWHDDAEKLNRWQQGLTGIPFVDAGMRELWQTGTMHNR 340 Query: 353 LRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPT 412 +RM+ SFLVK+L + W G +F LLD DLA+N+ WQW A G D+ PYFRIFNP Sbjct: 341 VRMVVGSFLVKNLGIHWHHGAAWFWDCLLDADLANNSASWQWIAGCGADAAPYFRIFNPV 400 Query: 413 IQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHS----WLDKNDLSLN--YPLPIVDHKKA 466 QG++FDP G + RH++PEL +P +Y+ P L + ++L YP P+VD K + Sbjct: 401 TQGQKFDPHGDYTRHFVPELAKLPNRYLFCPWQAPKGLLQECGITLGGTYPEPMVDIKVS 460 Query: 467 CHHTLNQYYAAKKQS 481 L+ Y ++ + Sbjct: 461 RQQALDAYAHMRQAT 475 >gi|3551221|dbj|BAA32809.1| blue-light photoreceptor [Adiantum capillus-veneris] gi|3551227|dbj|BAA32812.1| blue-light photoreceptor [Adiantum capillus-veneris] Length = 718 Score = 382 bits (980), Expect = e-104, Method: Composition-based stats. Identities = 132/488 (27%), Positives = 220/488 (45%), Gaps = 27/488 (5%) Query: 6 AMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASL 65 A S +VW R DLR+ DN A V+ VFI +P++ Q ++ SL Sbjct: 2 AKSCTVVWFRRDLRLEDNP--ALAAAARAGAVVPVFIWSPDEEGQFRPGRVSRWWLKQSL 59 Query: 66 LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125 +Q+ SL G+ N +D++ L +++ YN Y+ + RD +++ Sbjct: 60 IQLDISLRSLGVSLVMI---NANDTVSALLELVKTTGASQVVYNHLYDPVSLVRDHRVKQ 116 Query: 126 RL-QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL 184 L Q+ + +SF+ +L P +L+ + + + + + + + LP P Sbjct: 117 SLVQNGIQVQSFNGDLLYEPWEVLDDHGKPFTYFESYWAKCLTMPFEPESPLLP-PRRLT 175 Query: 185 TGPVTPSNIPRFFDYPFQA---------IDPMFPIGEQNALHILRKFCKEKVYYYVEQRD 235 P + + + + + G NA L F Y R Sbjct: 176 AAPAGIVHSLTPDELGLEDEADKSSNALLARAWAPGWSNADKALEAFLAGPFLNYSRNRH 235 Query: 236 IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFV----DLLIKPKSGAFSWLNELIWREFY 291 TS LSP+L G +S R+ ++ ++ V D + + ++ + +RE+ Sbjct: 236 EIDGPTTSLLSPHLHFGEVSVRKVFHSVRRLQVLWAKDGSMLGEESINYFMRSIGFREYS 295 Query: 292 RHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHN 351 R+L +P + + + W D L +AW+QG TG+P++DA MR+L GW+HN Sbjct: 296 RYLCFNFP-FTHERSLLSNLKSFPWRVDEGLFKAWRQGRTGYPLVDAGMRELWATGWLHN 354 Query: 352 RLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNP 411 R+R+I +SF VK L + WR G +YF LLD DL S+ GWQ+ + + D R+ NP Sbjct: 355 RVRVIVSSFCVKFLQLPWRWGMKYFWDTLLDADLESDILGWQYISGSLPDGHELDRMDNP 414 Query: 412 TIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSW------LDKNDLSLNYPLPIVDHKK 465 +G + DP G ++R WLPEL +PT++IH P +L NYP P+V+ Sbjct: 415 QTEGYKHDPLGEYVRRWLPELVRLPTEWIHHPWDAPPGVLRAAGVELGSNYPRPVVEVAA 474 Query: 466 ACHHTLNQ 473 A + Sbjct: 475 ARERLRDA 482 >gi|302693713|ref|XP_003036535.1| hypothetical protein SCHCODRAFT_49182 [Schizophyllum commune H4-8] gi|300110232|gb|EFJ01633.1| hypothetical protein SCHCODRAFT_49182 [Schizophyllum commune H4-8] Length = 587 Score = 382 bits (980), Expect = e-104, Method: Composition-based stats. Identities = 169/515 (32%), Positives = 261/515 (50%), Gaps = 52/515 (10%) Query: 11 LVWLR-NDLRITDNKALYAACHNSDA---KVIAVFIATPEQWRQHGISARQSHFIYASLL 66 + W+R D+RI DN+AL A + ++A+++ +P+ + H AR+ F+ +L Sbjct: 72 VYWMRMQDMRIEDNRALALASAEAQKTKKPLVAIYVISPQDYAAHDRGARRIDFMLRNLR 131 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 ++ L + I + + S KL+ N +YE++E+RRD + + Sbjct: 132 IIKIKLDEMHIPLHVVTHAPRSTLPRRIISLLSLVGAHKLYANIEYEVDELRRDIQVCEI 191 Query: 127 LQHRVICKSF-DDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185 + + +F D ++ PG + Y VY+PF++ + L + R L Sbjct: 192 AKKDGMKATFVHDKCIVEPGVAVKKDGSYYAVYSPFQRLWLATLNDSQGRFLDPSPEPAA 251 Query: 186 GPVTPSNIPRFFDY-----------------PFQAIDPMFPIGEQNALHILRKFCKE--- 225 + + D + + +P GE+ AL +L +F Sbjct: 252 NSKSVRKHEKLGDLFEGNVPETVEGFELAEDDRKKMAEYWPAGEEAALLVLDRFLSTKSR 311 Query: 226 ---------------------KVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLK 264 +++ Y ++RD TS++SPYL+ GV+S R+C Sbjct: 312 PEQAGGVNPLSQGAEESDKYSRIHVYGDERDRVNADTTSRISPYLASGVISARRCVRSTM 371 Query: 265 EE--FVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNK-DSH 321 + + +G W+ EL WR+FY ++ +P V MG+PFI I W D Sbjct: 372 KLTGSSKVDGGRNTGIGRWVQELAWRDFYVSVLVGFPRVSMGRPFIEKYADIVWEGGDIS 431 Query: 322 LLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLL 381 ++AWK+G TG+PI+DA MR + GW+HNRLRM TA FLVKDL+VDWR+GE Y+M L+ Sbjct: 432 EVRAWKEGRTGYPIVDAGMRCIKETGWLHNRLRMTTAMFLVKDLMVDWRVGERYYMQNLI 491 Query: 382 DGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIH 441 DGDLASNNGGWQW+ASTG D PYFRIFNP +Q ++ DP+G FIR +LPEL ++ + IH Sbjct: 492 DGDLASNNGGWQWSASTGVDPAPYFRIFNPYLQSEKADPEGDFIRMFLPELKSLKGKEIH 551 Query: 442 APHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYA 476 P + + K L YPLPIV H +A + ++ A Sbjct: 552 NPPANVAKR---LGYPLPIVKHSEAKDRAIRRFKA 583 >gi|256425909|ref|YP_003126562.1| deoxyribodipyrimidine photo-lyase [Chitinophaga pinensis DSM 2588] gi|256040817|gb|ACU64361.1| Deoxyribodipyrimidine photo-lyase [Chitinophaga pinensis DSM 2588] Length = 434 Score = 382 bits (980), Expect = e-104, Method: Composition-based stats. Identities = 165/473 (34%), Positives = 231/473 (48%), Gaps = 48/473 (10%) Query: 8 SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQ-HGISARQSHFIYASLL 66 +V+L WLR DLR+ D+ ALY A + + V+ VF+ R+ FI+ L Sbjct: 4 TVNLCWLRRDLRLLDHAALYHALKSGN-PVVPVFVFDTNILNDLDDKHDRRVTFIHDILE 62 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 +Q+ LS+ G + + + Y + V ++F N YE V+RD + K Sbjct: 63 DLQEKLSKLGSTLDV----FYGTPQQAFEHYTREYDVQEVFTNIDYEPYAVKRDSDIAKI 118 Query: 127 LQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAI-RL 184 L+ + I + D V+ +L Q Y V+TP+ K L L+ PV R Sbjct: 119 LKAKNIHFHLYKDHVIFDHSEVLKDNGQPYTVFTPYSKKWKSLLTDFYLKPYPVEKYFRN 178 Query: 185 TGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244 IP FQA FP + Y + RDIP I+GTS Sbjct: 179 FYKQKAKKIPSLRALGFQAGFRGFPPV---------NVKDNILKNYDKTRDIPGIEGTSH 229 Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304 L +L G +S R DL + + ++L ELIWR+F++ ++ +P V Sbjct: 230 LGVHLRFGTISIR-----------DLAERANTLNETFLGELIWRDFFQMILWHFPHVVT- 277 Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364 + F + I+W + Q W G TG+PI+DA MR+LNT G+MHNR+RMITASFL K Sbjct: 278 QSFRREYDNIQWRNNEKEFQRWCDGETGYPIVDAGMRELNTTGFMHNRVRMITASFLTKH 337 Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424 LL+DWR GE YF +LLD DLA+NNG WQWAA G D+ PYFR+FNPT+Q +RFDP + Sbjct: 338 LLIDWRWGEAYFAKKLLDYDLAANNGNWQWAAGCGCDAAPYFRVFNPTLQTQRFDPDFEY 397 Query: 425 IRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477 IR W+PE + Y P+V H++A L Y AA Sbjct: 398 IRKWVPEFEEL-------------------TYVKPMVVHEQARKRVLEVYKAA 431 >gi|107028642|ref|YP_625737.1| deoxyribodipyrimidine photolyase [Burkholderia cenocepacia AU 1054] gi|116690199|ref|YP_835822.1| deoxyribodipyrimidine photo-lyase [Burkholderia cenocepacia HI2424] gi|105897806|gb|ABF80764.1| deoxyribodipyrimidine photo-lyase type I [Burkholderia cenocepacia AU 1054] gi|116648288|gb|ABK08929.1| deoxyribodipyrimidine photo-lyase type I [Burkholderia cenocepacia HI2424] Length = 519 Score = 382 bits (980), Expect = e-103, Method: Composition-based stats. Identities = 147/479 (30%), Positives = 232/479 (48%), Gaps = 23/479 (4%) Query: 2 KATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFI 61 A +++ +VW R+DLR+TD AL A S ++ VF+ + ++ Sbjct: 29 SAKPSVAPAIVWFRDDLRVTDQPALTRAVE-SGRPLVCVFVDDTGAGAGPALGGAARWWL 87 Query: 62 YASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDK 121 + SL + +L++ + D+ ++ +++NR+Y + D Sbjct: 88 HGSLAGLDAALARHDGRLLLLRG----DAQREIERVVGDTGAAAVYWNRRYAQPQRDADA 143 Query: 122 LLEKRLQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVP 180 L+ L+ R + +S + S+L P +L + Y+V+T + +A ++ A P Sbjct: 144 ALKASLKARGVTVESSNGSLLNEPWEVLTGSGGPYQVFTAYWRAARRDRTVAAPLPAPER 203 Query: 181 AIRLTGP----------VTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYY 230 P + P D+ D E AL L F + Y Sbjct: 204 IAFHPWPQAVRDRALALDALALRPHAPDWAGGLRDAWPAPDEAGALARLDTFLTTSLAGY 263 Query: 231 VEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREF 290 + RD P TS+LSP+L G +SPRQ W+ ++ + A +L+EL WREF Sbjct: 264 ADARDRPDRPATSRLSPFLRFGNVSPRQVWHAVQGAANAGGAVYAAHADKFLSELGWREF 323 Query: 291 YRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMH 350 L+ +P++ F + + W D L+AW++G TG+P++DA +R+L T GWMH Sbjct: 324 SYTLLYHFPALATDN-FRAQFDAMPWRDDPAALRAWQRGRTGYPLVDAGLRELWTTGWMH 382 Query: 351 NRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFN 410 NR+RM+ ASFL+K LL+DWR GE +F L+D D A+N WQW A G D+ PYFRIFN Sbjct: 383 NRVRMVVASFLIKHLLIDWRAGEAWFRDTLVDADPANNAASWQWVAGCGADAAPYFRIFN 442 Query: 411 PTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSW------LDKNDLSLNYPLPIVDH 463 P QG++ DP G ++R W+PEL + IHAP L ++YP P+V+H Sbjct: 443 PVAQGQKCDPDGAYVRRWVPELAGLDDASIHAPWEASPLALEAAGVRLGIDYPAPLVEH 501 >gi|110679555|ref|YP_682562.1| deoxyribodipyrimidine photolyase, putative [Roseobacter denitrificans OCh 114] gi|109455671|gb|ABG31876.1| deoxyribodipyrimidine photolyase, putative [Roseobacter denitrificans OCh 114] Length = 472 Score = 381 bits (979), Expect = e-103, Method: Composition-based stats. Identities = 160/482 (33%), Positives = 233/482 (48%), Gaps = 27/482 (5%) Query: 6 AMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASL 65 + S LVW R DLR++D+ AL AA + + VI VFI +Q G + R + + Sbjct: 2 STSPVLVWFRRDLRLSDHPALDAAVKSGN-PVIPVFIHD-DQVETLGAAPR--WRLGLGI 57 Query: 66 LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125 + ++L + ++E L + L+ +F++R Y+ V RD ++ Sbjct: 58 GHLSETLEGLNSRLILRRGP----ALETLRTLILETGAGAVFWSRLYDPAAVERDTEVKA 113 Query: 126 RLQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL 184 L+ I +SF ++ P ++ YKVYTPF + V A L + Sbjct: 114 ALKQDGIDARSFGGHLMFEPWTVETKTGGFYKVYTPFWNMVKNRDVDAPLSAPSRIDAPA 173 Query: 185 TGP----VTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ 240 P ++ N+ D + P +GE A L F + V Y RD PAI Sbjct: 174 AWPGSDTLSDWNMGAAMDRGAAVVAPYVRLGEAAAQTRLNTFIDKIVAGYDTTRDQPAID 233 Query: 241 GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPS 300 GTS LS L++G +SP QCW + K GA ++L EL+WREF HLM P Sbjct: 234 GTSGLSENLALGEISPHQCWYAGLR----AREEEKPGAETFLKELVWREFAYHLMHHTPR 289 Query: 301 VCMGKPFIPWTEKIEWNKDS--HLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITA 358 + G + + WN+D ++ W+QG TG +DAAMR++ G MHNR RMI A Sbjct: 290 ILTGN-WKEDWDSFPWNRDETTQAVRRWQQGRTGIQFVDAAMREMYVTGRMHNRGRMIVA 348 Query: 359 SFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRF 418 S+L K LL DW+IG ++F L+D D ASN GWQW+A +G D+ PYFR+FNP Q +F Sbjct: 349 SYLTKHLLSDWKIGLKWFEDCLIDWDPASNAMGWQWSAGSGPDATPYFRVFNPVTQLDKF 408 Query: 419 DPQGTFIRHWLPELNNVPTQ----YIHA-PHSWLDKNDLSLNYPLPIVDHKKACHHTLNQ 473 D +++ W+ E PTQ Y A P +W D +YP P+V + L Sbjct: 409 DKNRQYVKRWVAEERRAPTQTALSYFDAIPRAWGLSAD--QDYPAPVVAADEGRKRALEA 466 Query: 474 YY 475 Y Sbjct: 467 YE 468 >gi|94965681|emb|CAG28805.1| cryptochrome1 [Brassica napus] gi|95140047|emb|CAC87903.2| cryptochrome 1 [Brassica napus] Length = 680 Score = 381 bits (979), Expect = e-103, Method: Composition-based stats. Identities = 142/500 (28%), Positives = 232/500 (46%), Gaps = 27/500 (5%) Query: 2 KATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFI 61 + +VW R DLR+ DN AL AA VIAVF+ PE+ + ++ Sbjct: 4 SCSGGGGCSIVWFRRDLRVEDNPALAAAVRAG--PVIAVFVWAPEEEGHYQPGRVSRWWL 61 Query: 62 YASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDK 121 SL Q+ SL G + + DS+ L +++F+N Y+ + RD Sbjct: 62 KNSLAQLDSSLRSLGTCLITKRST---DSVASLLEVVKSTGASQIFFNHLYDPLSLVRDH 118 Query: 122 LLEKRL-QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVP 180 + L + KSF+ +L P + + + + ++ F + + + LP P Sbjct: 119 RAKDALTAEGIAVKSFNADLLYEPWEVTDELGRPFSMFAAFWERCLSMPYDPESPLLP-P 177 Query: 181 AIRLTGPVTPSNIPRF--FDYPFQAIDPM----FPIGEQNALHILRKFCKEKVYYYVEQR 234 ++G V+ D + + + + G NA L F + Y + R Sbjct: 178 KKIISGDVSKCVADTLIFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNR 237 Query: 235 DIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFS----WLNELIWREF 290 TS LSP+L G +S R+ ++ L+ + V + +L + RE+ Sbjct: 238 RKADSATTSFLSPHLHFGEVSVRKVFHLLRIKQVAWANEGNQAGEESVNLFLKSIGLREY 297 Query: 291 YRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMH 350 R++ +P +P + + W D + +AW+QG TG+P++DA MR+L GW+H Sbjct: 298 SRYISFNHP-YSHERPLLGHLKFFPWAVDENYFKAWRQGRTGYPLVDAGMRELWATGWLH 356 Query: 351 NRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFN 410 +R+R++ +SF VK L + WR G +YF LLD DL S+ GWQ+ T DS + RI N Sbjct: 357 DRIRVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYITGTLPDSREFDRIDN 416 Query: 411 PTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKN------DLSLNYPLPIVDHK 464 P +G +FDP G ++R WLPEL+ +PT++IH P + + +L NYP PIV Sbjct: 417 PQFEGYKFDPNGEYVRRWLPELSRLPTEWIHHPWNAPESVLQAAGIELGSNYPRPIVGLD 476 Query: 465 KACHH---TLNQYYAAKKQS 481 +A L+Q + + S Sbjct: 477 EAKARLHEALSQMWQLEAAS 496 >gi|229918519|ref|YP_002887165.1| Deoxyribodipyrimidine photo-lyase [Exiguobacterium sp. AT1b] gi|229469948|gb|ACQ71720.1| Deoxyribodipyrimidine photo-lyase [Exiguobacterium sp. AT1b] Length = 450 Score = 381 bits (979), Expect = e-103, Method: Composition-based stats. Identities = 169/471 (35%), Positives = 245/471 (52%), Gaps = 28/471 (5%) Query: 11 LVWLRNDLRITDNKALYAACHNSDA--KVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 + W R+D R+TDN L+ + + + VF P+ + + + ++++ Sbjct: 4 ICWFRSDFRLTDNHMLHRVLKDMEEGDDLDFVFWLNPKYCHPFEV---RHDYFFSTMRTF 60 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128 L KG+ + D ++ L + L++N +Y +RD + + L Sbjct: 61 MDDLEAKGLGLRVLVAETEDAFVKQLGEMDV------LYFNAEYVEPFKQRDDRVIEALS 114 Query: 129 HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188 V D L P + + YKV+TPF+KA + V RL+ + Sbjct: 115 EDVKVVRLLDRHLFHPDAFRTKSGDPYKVFTPFKKAAYA---EQPPAPYEVDVNRLSQYI 171 Query: 189 -TPSNIPRFFDYPFQAIDPMFPI-GEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246 + + P F+ + GE A L +F +++ Y E+RDIP+I GTS+LS Sbjct: 172 RSKNEQPSELKELFKRCKREWKGLGETEAKKRLTRFVNDRMVDYDEKRDIPSIAGTSRLS 231 Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP 306 PYL GVLS R ++ L + G ++ +EL+WREFY +MA + + +P Sbjct: 232 PYLRTGVLSIRTITEQV------LSARQSKGRDTYYDELLWREFYYMVMAKFHGL-KDQP 284 Query: 307 FIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLL 366 F + IEW + + W G TG+PI+DAAMRQLN GWMHNRLRMI ASFL K LL Sbjct: 285 FNDKYKSIEWEDNEEQFEKWCNGETGYPIVDAAMRQLNETGWMHNRLRMIVASFLSKHLL 344 Query: 367 VDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIR 426 +DWR GE YF +L+D + ASN GGWQWAAS G D+VPYFRIFNPT Q +RFDP GTFIR Sbjct: 345 LDWRKGERYFEQKLIDYEAASNIGGWQWAASVGTDAVPYFRIFNPTTQSERFDPDGTFIR 404 Query: 427 HWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477 ++PEL +V + IH P +Y +P+VDHK+A L ++ A Sbjct: 405 KYVPELKHVSDKSIHFPD-----PSERDDYAMPLVDHKEARERALERFKAL 450 >gi|326332769|ref|ZP_08199030.1| deoxyribodipyrimidine photolyase [Nocardioidaceae bacterium Broad-1] gi|325949468|gb|EGD41547.1| deoxyribodipyrimidine photolyase [Nocardioidaceae bacterium Broad-1] Length = 446 Score = 381 bits (979), Expect = e-103, Method: Composition-based stats. Identities = 158/476 (33%), Positives = 230/476 (48%), Gaps = 32/476 (6%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M+ L+W R DLR+ D+ AL AA V+ +F+ P S R+ + ASL Sbjct: 1 MTTSLMWFRRDLRLGDHPALQAAAAEGQ--VVPLFVLDPRLAG----SGRRWERLLASLA 54 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 +++ ++ Q D E + + +++ + + RRD +E+R Sbjct: 55 ALREETDGALVIRQ-------GDPAEVVADVAAEAGASQVHVSTETTPYGRRRDAAVEQR 107 Query: 127 LQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185 L I + PG + N + Y+V+TPF +A ++ +A Sbjct: 108 LAAAGIGLVGTGSPYAVTPGRVRNASGAPYRVFTPFLRAWREHGWRAP-----------A 156 Query: 186 GPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245 G + + P GE+ ALH FC E + Y E RD P + TS+L Sbjct: 157 GDPEVEWMTKLESDPL-PSHSDQEAGERAALHRWEDFCAEDLAGYAESRDRPDLDRTSRL 215 Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305 S L G + PR L + ++ EL WREFY ++ P + Sbjct: 216 SVALKYGEIHPRTL---LADLGTHGTGASGEDVERFVAELAWREFYADVLWHDPGSAW-R 271 Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365 + + + D LL+AWK G TG+P +DA MRQL GWMHNR+RM+ ASFLVKDL Sbjct: 272 DLKDGLDGMRYEDDPELLEAWKSGTTGYPFVDAGMRQLLAEGWMHNRVRMVVASFLVKDL 331 Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425 + W +G +FM LLDGD+ASN+ GWQWAA TG D+ PYFR+FNP QG RFDPQG ++ Sbjct: 332 HMWWPVGARHFMDHLLDGDMASNSHGWQWAAGTGTDAAPYFRVFNPVTQGIRFDPQGDYV 391 Query: 426 RHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481 R W+PEL ++P H P W L+ YP P+VDH + L++ K+ + Sbjct: 392 RRWVPELRHLPGAAAHEP--WRHSEGLAHGYPEPVVDHAEERREALDRLAELKEST 445 >gi|147810570|emb|CAN71971.1| hypothetical protein VITISV_015253 [Vitis vinifera] Length = 641 Score = 381 bits (978), Expect = e-103, Method: Composition-based stats. Identities = 139/486 (28%), Positives = 232/486 (47%), Gaps = 26/486 (5%) Query: 1 MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHF 60 M + + +VW R DLR+ DN AL A V+ VFI P++ Q + Sbjct: 1 MSSDSR---TVVWFRRDLRVDDNPALATAAKEG--SVLPVFIWCPKEEGQFYPGRVSRWW 55 Query: 61 IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120 + SL+ +++SL G + + +IE L TKL YN Y+ + RD Sbjct: 56 LKQSLMHLKQSLRSLGADLLLIKAES---TIEALLECIHAIGATKLVYNHLYDPISLVRD 112 Query: 121 KLLEKRL-QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPV 179 ++++L + + +S++ +L P I + + + + + ++ P Sbjct: 113 HSIKQKLMELGMSVQSYNGDLLYKPWDIYDDKGNAFTTFEAYWNKCLSXQMEFVSLLPPW 172 Query: 180 PAIRLTGPVTPSNIPRF--FDYPFQAIDPM----FPIGEQNALHILRKFCKEKVYYYVEQ 233 + G V +I D ++ + + + G NA L +F ++ ++ Y + Sbjct: 173 RLVPAAGKVNNCSIEELGLEDESEKSSNALLGRGWSPGWSNADKALTEFIEQHLFDYSKX 232 Query: 234 RDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKS----GAFSWLNELIWRE 289 R TS LSPYL G LS R+ + ++ + + + + S +L + RE Sbjct: 233 RLKVEGNSTSLLSPYLHFGELSVRKVLHSVRMKQLLWVKEGNSVWEESVDLFLRAIGLRE 292 Query: 290 FYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWM 349 + R+L +PS +P + + W+ +AW+QG TG+P++DA MR+L GW+ Sbjct: 293 YSRYLCFNFPS-THERPLLSNLKHFPWHAXHVHFKAWRQGRTGYPLVDAGMRELWATGWI 351 Query: 350 HNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIF 409 HNR+R+I +SF VK LL+ W+ G +YF LLD DL S+ GWQ+ + + D R+ Sbjct: 352 HNRIRVIVSSFAVKFLLLPWKWGMKYFWDTLLDADLESDILGWQYISGSLPDGHELDRLD 411 Query: 410 NPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWL------DKNDLSLNYPLPIVDH 463 +P IQG +DP+G ++RHWLPEL VPT++IH P +L NYP PI++ Sbjct: 412 SPEIQGSNYDPEGEYVRHWLPELARVPTEWIHHPWDAPFTVLKSAGVELGQNYPKPIIEI 471 Query: 464 KKACHH 469 A Sbjct: 472 DLARER 477 >gi|302141959|emb|CBI19162.3| unnamed protein product [Vitis vinifera] Length = 691 Score = 381 bits (978), Expect = e-103, Method: Composition-based stats. Identities = 144/493 (29%), Positives = 225/493 (45%), Gaps = 27/493 (5%) Query: 5 TAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYAS 64 + +VW R DLR+ DN AL A VI VFI PE+ + ++ S Sbjct: 2 SGGGCSIVWFRRDLRVEDNPALAAGVRAG--AVIPVFIWAPEEEGPYYPGRVSRWWLKQS 59 Query: 65 LLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLE 124 L + SL G + + D + L T LF+N Y+ + RD + Sbjct: 60 LAHLDSSLRSLGTPLITKRST---DCVSSLLEIVKSTGATLLFFNHLYDPLSLVRDHRAK 116 Query: 125 KRL-QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIR 183 + L + SF+ +L P + + + ++ F + + LP P Sbjct: 117 EALTAQGIAVHSFNADLLYEPWDVNDAQGHSFTTFSAFWDRCLSMPYDPEAPLLP-PKRI 175 Query: 184 LTGPVT--PSNIPRFFDYPFQAIDPM----FPIGEQNALHILRKFCKEKVYYYVEQRDIP 237 G V+ PS+ F D + + + + G NA L F + Y + Sbjct: 176 NPGDVSRCPSDTIAFEDESEKGSNALLARAWTPGWSNADKALTIFINGPLIEYSKNSRKA 235 Query: 238 AIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFS----WLNELIWREFYRH 293 TS LSP+L G +S R+ ++ ++ + V + +L + RE+ R+ Sbjct: 236 DSATTSFLSPHLHFGEVSVRKVFHLVRIKQVLWANEGNKAGEESVNLFLKSIGLREYSRY 295 Query: 294 LMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRL 353 L +P +P + + W D +AW+QG TG+P++DA MR+L GWMH+R+ Sbjct: 296 LSFNHP-YSHERPLLGHLKFFPWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWMHDRI 354 Query: 354 RMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTI 413 R++ +SF VK L + WR G +YF LLD DL S+ GWQ+ + T D + RI NP Sbjct: 355 RVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTLPDGREFDRIDNPQF 414 Query: 414 QGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKN------DLSLNYPLPIV--DHKK 465 +G +FDP G ++R WLPEL +PT++IH P + + +L NYPLPIV D K Sbjct: 415 EGYKFDPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPLPIVEIDAAK 474 Query: 466 AC-HHTLNQYYAA 477 A L++ + A Sbjct: 475 ARLQEALSEMWQA 487 >gi|327272394|ref|XP_003220970.1| PREDICTED: cryptochrome-1-like isoform 1 [Anolis carolinensis] Length = 621 Score = 381 bits (978), Expect = e-103, Method: Composition-based stats. Identities = 123/498 (24%), Positives = 198/498 (39%), Gaps = 32/498 (6%) Query: 7 MSVH-LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASL 65 M V+ + W R LR+ DN AL +D V V+I P + + F+ L Sbjct: 1 MGVNAVHWFRKGLRLHDNPALREVIQGADT-VRCVYILDPWFAGSSNVGINRWRFLLQCL 59 Query: 66 LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125 + +L + + + + +TKL E RD ++K Sbjct: 60 EDLDANLRKLNSRLFVIRG----QPADVFPRLFKEWNITKLSIEYDSEPFGKERDAAIKK 115 Query: 126 RLQHRVICKSFD-DSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL 184 + L I+ + + LI + ++ + A + Sbjct: 116 LASEAGVEVIVRISHTLYELDKIIELNGGQPPLTYKRFQTLISRMEPLEIPVETITAEVM 175 Query: 185 TGPVTPSNIPRFFDYPFQAIDPM-----------FPIGEQNALHILRKFCKEKVYYYVEQ 233 + TP + Y +++ + +P GE AL L + + K + + Sbjct: 176 SKCTTPVSDDHDEKYGVPSLEELGFDTDGLPSAVWPGGETEALTRLERHLERKAWVANFE 235 Query: 234 RDIPAIQGT----SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWRE 289 R + LSPYL G LS R + +L + + + K S S +L+WRE Sbjct: 236 RPRMNANSLLASPTGLSPYLRFGCLSCRLFYFKLTDLYKKVK-KNSSPPLSLYGQLLWRE 294 Query: 290 FYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWM 349 F+ P + P +I W+++ L W +G TGFP IDA M QL GW+ Sbjct: 295 FFYTAATNNPRFDKMEG-NPICVQIPWDRNPEALAKWAEGRTGFPWIDAIMTQLRQEGWI 353 Query: 350 HNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRI 408 H+ R A FL + DL + W G + F LLD D + N G W W S + +F Sbjct: 354 HHLARHAVACFLTRGDLWISWEEGMKVFEELLLDADWSVNAGSWMW-LSCSSFFQQFFHC 412 Query: 409 FNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLD------KNDLSLNYPLPIVD 462 + P G+R DP G +IR +LP L P +YI+ P + D K + +NYP P+V+ Sbjct: 413 YCPVGFGRRTDPNGDYIRRYLPVLRGFPAKYIYDPWNAPDGVQKAAKCIIGVNYPKPMVN 472 Query: 463 HKKACHHTLNQYYAAKKQ 480 H +A + + +Q Sbjct: 473 HAEASRLNIERMKQMYQQ 490 >gi|330991596|ref|ZP_08315547.1| Cryptochrome-2 [Gluconacetobacter sp. SXCC-1] gi|329761615|gb|EGG78108.1| Cryptochrome-2 [Gluconacetobacter sp. SXCC-1] Length = 465 Score = 381 bits (978), Expect = e-103, Method: Composition-based stats. Identities = 141/483 (29%), Positives = 223/483 (46%), Gaps = 29/483 (6%) Query: 5 TAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYAS 64 + + ++W R+DLR+ DN AL A + VI +++ P + +++ + Sbjct: 2 SQSAPTIMWFRDDLRLADNPALSDAAASG--PVICLYVHDPALA----PGSAARWWLHGA 55 Query: 65 LLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLE 124 L ++ L +G + + Q + +NR+Y + D ++ Sbjct: 56 LTALEDDLRARGGRLCIMAGPAWQCVLR----LARQAGAGAVVWNRRYGGAARQVDARIK 111 Query: 125 KRLQH-RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQN-LVQADLRSLPVPAI 182 L+ V +S ++L P + ++VYTP+ +A+ L Sbjct: 112 LALKDMGVQARSHRGNMLHEPWQVRTRQGAPFRVYTPWWRAVRAMGAPLPPLPVPAALGF 171 Query: 183 RLTGPVTPSNIPRFFDYPFQAIDP--------MFPIGEQNALHILRKFCKEKVYYYVEQR 234 P + Q P + GEQ A L F ++ Y R Sbjct: 172 AALPPAVEDGLVSLSALGLQPTRPDWAQGLRDTWQPGEQAAHARLATFMATRLPGYARLR 231 Query: 235 DIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHL 294 D+PA TS LSP L G +SPRQ W+ + + + +L+E+ WR+F Sbjct: 232 DLPARPATSGLSPCLRFGHISPRQIWHAV-----EAQGDVDADGMCFLSEVGWRDFAHAT 286 Query: 295 MAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLR 354 + P + + P +++ W D L+AW+QG TG+PI+DA MR+L GWMHNR+R Sbjct: 287 LFDCPDMAT-RSLRPEYDRMPWRTDPAGLRAWQQGRTGYPIVDAGMRELWHTGWMHNRVR 345 Query: 355 MITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQ 414 MI ASFL K LL+DWR GE +F L+D D ASN WQW A G D+ PYFRIFNP +Q Sbjct: 346 MIVASFLTKHLLLDWRAGERWFADTLVDADGASNPFNWQWVAGCGLDAAPYFRIFNPVLQ 405 Query: 415 GKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQY 474 G++FDP+G ++R W+PE+ ++ + +H P + + YP P+VD L + Sbjct: 406 GEKFDPEGDYVRRWVPEIAHLAGRAVHTPWKFPH---VHRGYPAPVVDLADGRARALAAW 462 Query: 475 YAA 477 Sbjct: 463 KTL 465 >gi|172039222|ref|YP_001805723.1| DNA photolyase [Cyanothece sp. ATCC 51142] gi|171700676|gb|ACB53657.1| DNA photolyase [Cyanothece sp. ATCC 51142] Length = 491 Score = 381 bits (978), Expect = e-103, Method: Composition-based stats. Identities = 129/490 (26%), Positives = 232/490 (47%), Gaps = 31/490 (6%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQ-----HGISARQSHFIYASL 65 L+W RNDLRI D++ +Y A A +I ++ Q++ + F+ S+ Sbjct: 12 LIWYRNDLRIHDHEPMYQAIKEG-ALIIPLYCFDIRQFKTTSYGFPKTGNFRGQFLLESV 70 Query: 66 LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125 +++SL G + + + + + ++++ + E +K +++ Sbjct: 71 ANLRQSLQDLGSNLIVRKG----YPEKIIPELIKELEIDAVYFHEEVTSEETTVEKEVKQ 126 Query: 126 RLQH-RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL 184 L+ +V + F S L + Q+ +V+T FRK + ++ P+ + Sbjct: 127 ALKPLKVKVQGFWGSTLYHWDDLPFEVNQLPEVFTSFRKKVEKSSTVNPTLITPIKLLPF 186 Query: 185 TGPVTPSNIPRFFDYPFQAIDPM------FPIGEQNALHILRKFCKEKV--YYYVEQRD- 235 + IP + + D F GE + L+++ E+ Y E R+ Sbjct: 187 PN-IELGKIPTLEELGLEKPDYHSRGMLNFKGGETGGIKRLKEYFWERNCLKEYKETRNG 245 Query: 236 IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLM 295 + +S+ SP+L+ G LSPR + + +++ D +K S + + EL+WR+++R + Sbjct: 246 MLGADYSSKFSPWLAQGCLSPRYIYEEV-QKYEDARVKNNS-TYWLIFELLWRDYFRFIC 303 Query: 296 AFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRM 355 A + + + + + I W +D + W++ TG+P++DA MR++ G+M NR R Sbjct: 304 AKHGNKIFYESGLQGLD-IPWKEDKERFKLWQESKTGYPLVDANMREIAATGFMSNRGRQ 362 Query: 356 ITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQG 415 ASFL K+L ++W +G E+F S L+D D+ SN G W + A GND+ FR FN Q Sbjct: 363 NVASFLTKNLGINWIMGAEWFESLLIDYDVCSNYGNWNYTAGVGNDARG-FRYFNIPKQS 421 Query: 416 KRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND------LSLNYPLPIVDHKKACHH 469 K +DP+G ++RHWLPEL +P IH P + ++YP P+VD K+ Sbjct: 422 KDYDPKGDYLRHWLPELKMIPGDKIHEPWKLSQDEQKRYNVRIGVDYPRPVVDFFKSVKA 481 Query: 470 TLNQYYAAKK 479 Y +A K Sbjct: 482 NEKVYNSATK 491 >gi|284989430|ref|YP_003407984.1| Deoxyribodipyrimidine photo-lyase [Geodermatophilus obscurus DSM 43160] gi|284062675|gb|ADB73613.1| Deoxyribodipyrimidine photo-lyase [Geodermatophilus obscurus DSM 43160] Length = 454 Score = 380 bits (977), Expect = e-103, Method: Composition-based stats. Identities = 158/479 (32%), Positives = 224/479 (46%), Gaps = 30/479 (6%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNS--DAKVIAVFIATPEQWRQHGISARQSHFIYAS 64 M L+W R DLR+ D+ AL A + D V+ VF+ P W G+ RQ F+ Sbjct: 1 MPTALLWFRRDLRLADHPALLDAREAAGPDGAVVPVFVFDPRLWGPSGLPRRQ--FLLDC 58 Query: 65 LLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLE 124 L + G D L + + + RD +E Sbjct: 59 LADL-------GAQVDGALVMRSGDPARVLPDLVREVGAGSVHVSADTGPYGRERDAAVE 111 Query: 125 KRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL 184 + L V + PG + ++V++PF +A ++ + P P Sbjct: 112 RALGD-VPLVRTGSPYAVTPGRVTKSDGTPFRVFSPFARAWREHGWRD-----PAPRPDA 165 Query: 185 TGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244 T + P + P GE A R+F E++ Y R+ P GTS+ Sbjct: 166 VPWSTGVRSEDPPEVPGLDGVRLPPAGEAAASDAWRRFRAERLEGYKSTRNTPGSDGTSR 225 Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304 LS YL G + PR L++ A S+ NEL WR+FY ++ P Sbjct: 226 LSAYLKYGCVHPRTLLADLEDL-------DSDSADSFRNELAWRDFYADVLWHRPESAR- 277 Query: 305 KPFIPWTEKIEWNKDS---HLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFL 361 +P + ++ AW +G TG+PI+DA MRQL ++HNR+RMI ASFL Sbjct: 278 EPLDERMHAMAYDTGPDADERFAAWARGRTGYPIVDAGMRQLLGEAYVHNRVRMIIASFL 337 Query: 362 VKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQ 421 VKDL VDWR G YFM L+DGDLASNN GWQW A TG D+ PY+R+FNPT QG+ FDP Sbjct: 338 VKDLHVDWRRGARYFMQHLVDGDLASNNHGWQWVAGTGTDASPYYRVFNPTRQGREFDPD 397 Query: 422 GTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQ 480 G ++R W+PEL +VP +++H P WL + + YPLPIVDH + L +Y + + Sbjct: 398 GDYVRRWVPELRDVPARHVHEP--WLAPDGVPDGYPLPIVDHAEERRVALERYEQVRDR 454 >gi|209559671|ref|YP_002286143.1| Putative deoxyribodipyrimidine photolyase [Streptococcus pyogenes NZ131] gi|209540872|gb|ACI61448.1| Putative deoxyribodipyrimidine photolyase [Streptococcus pyogenes NZ131] Length = 469 Score = 380 bits (977), Expect = e-103, Method: Composition-based stats. Identities = 173/479 (36%), Positives = 242/479 (50%), Gaps = 22/479 (4%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 V ++W R DLRI D KAL A S + + VF EQ S QS FI S+L Sbjct: 2 VSVMWFRRDLRIDDQKALAHAIA-SQSPTLCVFQFNKEQLNLLH-SRNQSSFIT-SVLAF 58 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128 +K L +GI + L T +++N RD+ + + Sbjct: 59 RKLLKCEGIDLYLMYGDLMTCFEQLLTQLK---DWTDVYFNYDESGYGRLRDQKAAQFFK 115 Query: 129 HRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187 I ++ D L I+N + Q YKV+TP+ + + ++ + + R Sbjct: 116 KNGIAVHTYQDHYLHGSQEIINQSGQPYKVFTPYYRIWQNYPKETPIK-VELSQGRWLNL 174 Query: 188 VTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSP 247 TP ++ R + F+ A L +F ++++ Y RD PA GTS+LSP Sbjct: 175 ETPDDVLRTVE-SFKDEKYQDVATFDEASKQLNRFIQDQLAAYHANRDFPAQLGTSRLSP 233 Query: 248 YLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPF 307 +L IG + R ++ +++ G ++L EL WR+FY + YP +P Sbjct: 234 FLRIGAIGIRTVYHAVRQA------PNSLGQATFLKELAWRDFYNMVYVAYPDQ-KTQPI 286 Query: 308 IPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLV 367 +IEW + Q WK+G TG+PI+DAAM QL GWMHNRLRMI ASFL KDLL Sbjct: 287 QKAFSQIEWVNNPDWFQLWKEGKTGYPIVDAAMLQLQKTGWMHNRLRMIVASFLTKDLLC 346 Query: 368 DWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRH 427 D R+GE+YF QL+D D ASN GGWQWAASTG D+VPYFRIFNP QGKRFDP+G FI+ Sbjct: 347 DGRLGEQYFQQQLIDYDAASNIGGWQWAASTGTDAVPYFRIFNPVTQGKRFDPKGEFIKA 406 Query: 428 WLPELNNVPTQYIHAPHSWLD------KNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQ 480 +LP+L +VP Y+ P + +Y PIVDH K + +Y AK++ Sbjct: 407 YLPQLEHVPENYLLEPGKMPKNLQESVSCIIGTDYAQPIVDHAKQREQAIAKYEWAKEK 465 >gi|325285379|ref|YP_004261169.1| Deoxyribodipyrimidine photo-lyase [Cellulophaga lytica DSM 7489] gi|324320833|gb|ADY28298.1| Deoxyribodipyrimidine photo-lyase [Cellulophaga lytica DSM 7489] Length = 429 Score = 380 bits (977), Expect = e-103, Method: Composition-based stats. Identities = 148/471 (31%), Positives = 221/471 (46%), Gaps = 51/471 (10%) Query: 8 SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67 + + W R DLRI DN AL A + + V+ VFI + + FI+ ++ Sbjct: 4 KISVFWFRRDLRIEDNTALCNALKSGN-PVLPVFIFDENILNELDADDARVTFIHKTISA 62 Query: 68 VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127 + +L + + + + +Y V ++F+N+ YE RD+ + L Sbjct: 63 INLTLKEYNSGVLCLHTTPELAWKKIVSTY----NVERVFFNKDYEPYARERDQKITSFL 118 Query: 128 QHR-VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 + + KS DSV+ +L + Y VYTP++ + DL + Sbjct: 119 NDKSIKVKSNKDSVIFEENDVLKNDGDPYTVYTPYKNKWLSKFTP-DLIEDKKCDFKGKL 177 Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246 + P + F A + + E + Y E+RD P+ T+ L Sbjct: 178 LEFNVDFPSLENLGFSASNITVEP-----------YNLEHLDIYAEKRDFPSDDITTYLG 226 Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFS-WLNELIWREFYRHLMAFYPSVCMGK 305 P+L G +S R+ I+ G S +L+EL+WREF+ ++ +P V Sbjct: 227 PHLRFGTVSVRKL------------IRGLDGLESVFLSELVWREFFTQILFHFPKVVTQN 274 Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365 F + I+W + + W G TG+P++DA MRQLN G+MHNR+RMITA FL K L Sbjct: 275 -FRSKYDGIKWRNNKEDFEKWCTGNTGYPMVDAGMRQLNKTGYMHNRVRMITAGFLCKHL 333 Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425 L+DW+ GE YF +LLD +LASNNG WQWAA TG D+ PYFRIFNP Q K+FD ++ Sbjct: 334 LIDWQWGEAYFAKKLLDYELASNNGNWQWAAGTGCDAAPYFRIFNPITQLKKFDKDFKYV 393 Query: 426 RHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYA 476 +HW+PEL+ NYP P+V+HK A L Y Sbjct: 394 KHWIPELD-------------------GFNYPQPMVEHKAARERALKVYKE 425 >gi|260940315|ref|XP_002614457.1| hypothetical protein CLUG_05235 [Clavispora lusitaniae ATCC 42720] gi|238851643|gb|EEQ41107.1| hypothetical protein CLUG_05235 [Clavispora lusitaniae ATCC 42720] Length = 548 Score = 380 bits (977), Expect = e-103, Method: Composition-based stats. Identities = 159/490 (32%), Positives = 256/490 (52%), Gaps = 23/490 (4%) Query: 12 VWLRNDLRITDNKALYAA---CHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 W DLR+ DN L A + ++ ++ PE H + Q ++ + SL Q+ Sbjct: 63 HWFMRDLRVRDNNGLSHANKLALKNGIPMLCFWVHCPEMELAHNVGDFQKYYRFLSLHQL 122 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDK-LLEKRL 127 Q+ L++ I + D I + + V+ LF N +YE++E+R + K L Sbjct: 123 QEKLAKLNINLIIVKAERRADIIPQVLQLLQKYGVSHLFSNLEYEVDELRLATTAMTKFL 182 Query: 128 QHRVICKSFDDSVLLPPGSILNHA-LQMYKVYTPFRKALIQNLVQADLRS------LPVP 180 + ++ +S ++ PG++ + Y V++P+ +A + + Q P+ Sbjct: 183 EEKISFTPCHNSCVVLPGALKTKSKGTQYAVFSPWFRAWMAYVDQELFSKEHFEYDSPIK 242 Query: 181 AIRLTGPVTPSNIPRFFDYPFQAIDPMFP-IGEQNALHILRKFCK-EKVYYYVEQRDIPA 238 + D + + IGE AL L ++ + +++ Y ++RD Sbjct: 243 LEKQLSVSQQDLEIPDVDVDKERFHKYWKMIGEDGALEQLAEYIESDEINKYKDERDFLD 302 Query: 239 IQGTSQLSPYLSIGVLSPRQCWNRLKE--EFVDLLIKPKSGAFSWLNELIWREFYRHLMA 296 ++ S +S ++S G +S R L++ + +L SG F W+ ++ WR+FY+H++ Sbjct: 303 LESVSNMSVHISSGTISTRTILQELRQNKKMKNLHTLKTSGVFEWIRQISWRDFYKHIIC 362 Query: 297 FYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMI 356 ++P VCM KPF + + W D + W G TGFPI+DA MR LN G+++NR R+I Sbjct: 363 YWPYVCMFKPFHLEYDDLSWEYDEDHFERWCSGNTGFPIVDACMRCLNETGYLNNRGRLI 422 Query: 357 TASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGK 416 ASFL K+LL+DWR GE+YF+S+L+D D SNNGGW +A+STG D PYFRIFNP Q + Sbjct: 423 VASFLSKNLLIDWRNGEQYFLSKLIDSDFCSNNGGWGFASSTGVDPQPYFRIFNPWTQSE 482 Query: 417 RFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYA 476 RFDP G FI+ W+PEL +V + +H S + L NY PIV HK+ L +Y A Sbjct: 483 RFDPDGEFIKKWVPELVDVSPKMLHKETS----DPLCANYTAPIVSHKETRSRALEKYKA 538 Query: 477 A----KKQSL 482 A +K++L Sbjct: 539 AMEEGRKKNL 548 >gi|161779368|gb|ABX79355.1| cryptochrome 1 [Vitis vinifera] Length = 681 Score = 380 bits (976), Expect = e-103, Method: Composition-based stats. Identities = 145/493 (29%), Positives = 225/493 (45%), Gaps = 27/493 (5%) Query: 5 TAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYAS 64 + +VW R DLR+ DN AL A VI VFI PE+ + ++ S Sbjct: 2 SGGGCSIVWFRRDLRVEDNPALAAGVRAG--AVIPVFIWAPEEEGPYYPGRVSRWWLKQS 59 Query: 65 LLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLE 124 L + SL G + + D I L T LF+N Y+ + RD + Sbjct: 60 LAHLDSSLRSLGTPLITKRST---DCISSLLEIVKSTGATLLFFNHLYDPLSLVRDHRAK 116 Query: 125 KRL-QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIR 183 + L + SF+ +L P + + + ++ F + + LP P Sbjct: 117 EALTAQGIAVHSFNADLLYEPWDVNDAQGHSFTTFSAFWDRCLSMPYDPEAPLLP-PKRI 175 Query: 184 LTGPVT--PSNIPRFFDYPFQAIDPM----FPIGEQNALHILRKFCKEKVYYYVEQRDIP 237 G V+ PS+ F D + + + + G NA L F + Y + Sbjct: 176 NPGDVSRCPSDTIAFEDESEKGSNALLARAWTPGWSNADKALTIFINGPLIEYSKNSRKA 235 Query: 238 AIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFS----WLNELIWREFYRH 293 TS LSP+L G +S R+ ++ ++ + V + +L + RE+ R+ Sbjct: 236 DSATTSFLSPHLHFGEVSVRKVFHLVRIKQVLWANEGNKAGEESVNLFLKSIGLREYSRY 295 Query: 294 LMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRL 353 L +P +P + + W D +AW+QG TG+P++DA MR+L GWMH+R+ Sbjct: 296 LSFNHP-YSHERPLLGHLKFFPWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWMHDRI 354 Query: 354 RMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTI 413 R++ +SF VK L + WR G +YF LLD DL S+ GWQ+ + T D + RI NP Sbjct: 355 RVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTLPDGREFDRIDNPQF 414 Query: 414 QGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKN------DLSLNYPLPIV--DHKK 465 +G +FDP G ++R WLPEL +PT++IH P + + +L NYPLPIV D K Sbjct: 415 EGYKFDPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPLPIVEIDAAK 474 Query: 466 AC-HHTLNQYYAA 477 A L++ + A Sbjct: 475 ARLQEALSEMWQA 487 >gi|224084664|ref|XP_002307379.1| predicted protein [Populus trichocarpa] gi|222856828|gb|EEE94375.1| predicted protein [Populus trichocarpa] Length = 680 Score = 380 bits (976), Expect = e-103, Method: Composition-based stats. Identities = 142/492 (28%), Positives = 228/492 (46%), Gaps = 27/492 (5%) Query: 5 TAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYAS 64 + +VW R DLR+ DN AL A V+AVF+ PE+ + ++ S Sbjct: 2 SGGGCSIVWFRRDLRVEDNPALAAGVRAG--AVVAVFVWAPEEEGHYYPGRVSRWWLKQS 59 Query: 65 LLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLE 124 L + SL G + + DS+ L T+L +N Y+ + RD + Sbjct: 60 LAHLDSSLRSLGTSLVTKRST---DSVSSLLEVVKSTGATQLLFNHLYDPLSLVRDHRAK 116 Query: 125 KRL-QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIR 183 + L + +SF+ +L P + + + + + F + + + LP P Sbjct: 117 EILTAQGITVRSFNADLLYEPWDVNDAQGRPFTTFDTFWERCLSMPFDPEAPLLP-PKRI 175 Query: 184 LTGPVT--PSNIPRFFDYPFQAIDPM----FPIGEQNALHILRKFCKEKVYYYVEQRDIP 237 ++G V+ PS F D + + + + G NA L F + Y R Sbjct: 176 ISGDVSRCPSVTLVFEDESEKGSNALLARAWSPGWSNADRALTTFINGPLIEYSMNRRKA 235 Query: 238 AIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFS----WLNELIWREFYRH 293 TS LSP+L G +S R+ ++ ++ + V + ++ + RE+ R+ Sbjct: 236 DSATTSFLSPHLHFGEVSVRKVFHLVRIKQVLWANEGNRAGEESVNLFIKSIGLREYSRY 295 Query: 294 LMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRL 353 L +P +P + + W D +AW+QG TG+P++DA MR+L GW+H+R+ Sbjct: 296 LSFNHP-CTHERPLLGHLKFFPWVVDEGYFKAWRQGRTGYPLVDAGMRELWAAGWLHDRI 354 Query: 354 RMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTI 413 R++ ASF VK L + WR G +YF LLD DL S+ GWQ+ T DS + RI NP Sbjct: 355 RVVVASFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYITGTLPDSREFDRIDNPQF 414 Query: 414 QGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKN------DLSLNYPLPIV--DHKK 465 +G +FDP G ++R WLPEL +PT++IH P + + +L NYPLPIV D K Sbjct: 415 EGYKFDPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPLPIVGIDAAK 474 Query: 466 AC-HHTLNQYYA 476 L++ + Sbjct: 475 VRLEEALSEMWQ 486 >gi|295134157|ref|YP_003584833.1| deoxyribodipyrimidine photo-lyase [Zunongwangia profunda SM-A87] gi|294982172|gb|ADF52637.1| deoxyribodipyrimidine photo-lyase [Zunongwangia profunda SM-A87] Length = 437 Score = 380 bits (976), Expect = e-103, Method: Composition-based stats. Identities = 143/474 (30%), Positives = 217/474 (45%), Gaps = 49/474 (10%) Query: 8 SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67 +++ W R DLR+ DN A+ + V+ +FI PE + FI+ +L Sbjct: 5 KINIFWFRRDLRLDDNVGFLASLKE-EHPVMPIFIFDPEILDNLPEDDARVTFIFETLQD 63 Query: 68 VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127 ++ L + E + K+F NR YE RD+ ++K L Sbjct: 64 MRNELQENH---HSSIGMYHGKPEEVFKELLKNYSLGKVFTNRDYEPYAKDRDEKIQKLL 120 Query: 128 -QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLR-SLPVPAIRLT 185 ++ V ++F D V+ ++ Y VYTP+ K +++ +DL+ + Sbjct: 121 DENNVKFETFKDQVIFEKDEVVKGDGDPYVVYTPYMKTWMEHFKNSDLKIHYTSQFLDNL 180 Query: 186 GPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEK--VYYYVEQRDIPAIQGTS 243 T D F+ P F + Y + R+IP+ +GTS Sbjct: 181 VQNTRLPNLSLSDIGFKKSSLKVP-----------DFDTTPSLIQRYEDTRNIPSKEGTS 229 Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCM 303 +L P+L G +S R+ + ++L EL+WREF+ ++ PS Sbjct: 230 RLGPHLRFGTVSVRKMVKKA----------NNEKNKTFLQELVWREFFMQVLYHNPSTVT 279 Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363 F + I+W + + WK G TGFP++DA MRQLN G+MHNR+RM+ SFL K Sbjct: 280 D-AFKKKYDNIQWRNNKEEFEKWKNGKTGFPLVDAGMRQLNKSGFMHNRVRMLVGSFLCK 338 Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423 LL+DWR GE YF +LLD +++SN G WQW A +G D+VPYFRIFNPT Q +FD Sbjct: 339 HLLIDWRWGEAYFAEKLLDYEMSSNVGNWQWVAGSGVDAVPYFRIFNPTTQIDKFDKDKK 398 Query: 424 FIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477 +I+ W+ E S +YP +VDHK+A L+ Y A Sbjct: 399 YIKEWVEEFG-------------------SDDYPDKMVDHKEARERALSTYKEA 433 >gi|225459298|ref|XP_002285792.1| PREDICTED: hypothetical protein [Vitis vinifera] Length = 681 Score = 380 bits (976), Expect = e-103, Method: Composition-based stats. Identities = 142/492 (28%), Positives = 222/492 (45%), Gaps = 25/492 (5%) Query: 5 TAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYAS 64 + +VW R DLR+ DN AL A VI VFI PE+ + ++ S Sbjct: 2 SGGGCSIVWFRRDLRVEDNPALAAGVRAG--AVIPVFIWAPEEEGPYYPGRVSRWWLKQS 59 Query: 65 LLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLE 124 L + SL G + + D + L T LF+N Y+ + RD + Sbjct: 60 LAHLDSSLRSLGTPLITKRST---DCVSSLLEIVKSTGATLLFFNHLYDPLSLVRDHRAK 116 Query: 125 KRL-QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIR 183 + L + SF+ +L P + + + ++ F + + LP I Sbjct: 117 EALTAQGIAVHSFNADLLYEPWDVNDAQGHSFTTFSAFWDRCLSMPYDPEAPLLPPKRIN 176 Query: 184 LTG-PVTPSNIPRFFDYPFQAIDPM----FPIGEQNALHILRKFCKEKVYYYVEQRDIPA 238 PS+ F D + + + + G NA L F + Y + Sbjct: 177 PGDVSRCPSDTIAFEDESEKGSNALLARAWTPGWSNADKALTIFINGPLIEYSKNSRKAD 236 Query: 239 IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFS----WLNELIWREFYRHL 294 TS LSP+L G +S R+ ++ ++ + V + +L + RE+ R+L Sbjct: 237 SATTSFLSPHLHFGEVSVRKVFHLVRIKQVLWANEGNKAGEESVNLFLKSIGLREYSRYL 296 Query: 295 MAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLR 354 +P +P + + W D +AW+QG TG+P++DA MR+L GWMH+R+R Sbjct: 297 SFNHP-YSHERPLLGHLKFFPWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWMHDRIR 355 Query: 355 MITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQ 414 ++ +SF VK L + WR G +YF LLD DL S+ GWQ+ + T D + RI NP + Sbjct: 356 VVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTLPDGREFDRIDNPQFE 415 Query: 415 GKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKN------DLSLNYPLPIV--DHKKA 466 G +FDP G ++R WLPEL +PT++IH P + + +L NYPLPIV D KA Sbjct: 416 GYKFDPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPLPIVEIDAAKA 475 Query: 467 C-HHTLNQYYAA 477 L++ + A Sbjct: 476 RLQEALSEMWQA 487 >gi|218191203|gb|EEC73630.1| hypothetical protein OsI_08136 [Oryza sativa Indica Group] Length = 665 Score = 380 bits (976), Expect = e-103, Method: Composition-based stats. Identities = 135/494 (27%), Positives = 218/494 (44%), Gaps = 42/494 (8%) Query: 10 HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69 +VW R DLRI DN AL +A D V+ VFI P Q ++ SL + Sbjct: 7 TVVWFRRDLRIDDNPALASAAR--DGAVLPVFIWCPADEGQFYPGRCSRWWLKQSLPHLS 64 Query: 70 KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH 129 +SL G + + ++E L T+L YN Y+ + RD ++K L Sbjct: 65 QSLESLGCPLVLIRAES---TLEALLRCIDSVGATRLVYNHLYDPVSLVRDDKIKKELSA 121 Query: 130 RVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188 I +SF+ +L P I + + + + + + ++ + P + + G + Sbjct: 122 LGISIQSFNGDLLYEPWEIYDDSGLAFTTFNMYWEKCMELPIDVSPSLAPWKLVPVPG-L 180 Query: 189 TPSNIPRFFDYPFQA----------IDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPA 238 D ++ + + G +NA +L +F + Y + Sbjct: 181 ESVRSCSVDDLGLESSKDEESSNALLRRAWSPGWRNAEKMLEEFVSHGLLEYSKHGMKVE 240 Query: 239 IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFS----WLNELIWREFYRHL 294 TS LSPYL G +S R+ + ++ + + + S A ++ + RE+ R+L Sbjct: 241 GATTSLLSPYLHFGEVSVRKVYQLVRMQQIKWENEGTSEAEESIHFFMRSIGLREYSRYL 300 Query: 295 MAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLR 354 +P K + + W D ++W+QG TG+P++DA MR+L GW HNR+R Sbjct: 301 CFNFP-FTHEKSLLGNLKHYPWKVDEERFKSWRQGMTGYPLVDAGMRELWATGWTHNRIR 359 Query: 355 MITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQ 414 +I +SF VK LL+ W G +YF LLD DL S+ GWQ+ + + D R+ NP I Sbjct: 360 VIISSFAVKFLLIPWTWGMKYFWDVLLDADLESDILGWQYISGSLPDGHELSRLDNPEIM 419 Query: 415 --------------GKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWL------DKNDLSL 454 G+++DP G ++R W+PEL +PT++IH P +L Sbjct: 420 ENVIATYYALCMVQGQKYDPDGVYVRTWIPELARMPTEWIHHPWDAPSCILEVAGVELGF 479 Query: 455 NYPLPIVDHKKACH 468 NYP PIVD A Sbjct: 480 NYPKPIVDLHIARE 493 >gi|78183823|ref|YP_376257.1| deoxyribodipyrimidine photolyase [Synechococcus sp. CC9902] gi|78168117|gb|ABB25214.1| Deoxyribodipyrimidine photo-lyase type I [Synechococcus sp. CC9902] Length = 477 Score = 380 bits (976), Expect = e-103, Method: Composition-based stats. Identities = 163/485 (33%), Positives = 231/485 (47%), Gaps = 22/485 (4%) Query: 6 AMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQH----GISARQSHFI 61 S L W R DLR+ DN + AA S A V V++ P + ++ + F+ Sbjct: 2 TASRVLFWHRRDLRLADNLGIQAAVEISPA-VTGVYVLDPALIQPPQSLPPMAPARLWFL 60 Query: 62 YASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDK 121 SL+++Q+ G + D ++ L + + +NR E RD+ Sbjct: 61 LESLIELQQRWRAAGSRLLILEG----DPVQVLPPLAERLGAEAVVWNRDVEPYSRERDR 116 Query: 122 LLEKRLQHRV-ICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVP 180 + KRLQ D +L+PP + A Y+VY PF + + ++ P Sbjct: 117 QVAKRLQADGRKVVVDWDQLLIPPELLKTGAGDPYRVYGPFLRNWRGKVQAQQPITIEAP 176 Query: 181 A--IRLTGPVTPSNIPR---FFDYPFQAIDPMFP-IGEQNALHILRKFCKEKVYYYVEQR 234 + + L + P P + FQ + GE AL L F + Y R Sbjct: 177 SGLVDLHSDLVPDRDPLAALLHRHGFQGTEICPCRPGESAALEQLTLFADGPLSGYEPDR 236 Query: 235 DIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFS-WLNELIWREFYRH 293 + P++ GTS LS LS+G LSPRQ W ++ + A + W EL WREFY+ Sbjct: 237 NFPSVVGTSYLSAALSVGTLSPRQAWCAAQQGRDHARSDEQRTAIAVWEQELGWREFYQQ 296 Query: 294 LMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRL 353 + +P + G P+ + W + +W++G TG PIIDAAMRQLN GWMHNR Sbjct: 297 ALFHFPELADG-PYREQWRRFPWENNEAWFSSWREGMTGMPIIDAAMRQLNESGWMHNRC 355 Query: 354 RMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTI 413 RMI ASFLVKDL+ DWR GE FM +DGDLA+NNGGWQW+AS+G D P RIFNP Sbjct: 356 RMIVASFLVKDLICDWRWGERAFMELEVDGDLAANNGGWQWSASSGMDPKP-LRIFNPAT 414 Query: 414 QGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQ 473 Q +FD G +IR W+PEL +V T+ + + YP P++ HK Sbjct: 415 QATKFDADGEYIRRWVPELRHVNTKDLLTGEIGGLERR---GYPEPLITHKTQQALFKTL 471 Query: 474 YYAAK 478 Y + Sbjct: 472 YATIR 476 >gi|161898816|gb|ABX80391.1| cryptochrome 1 [Vitis riparia] Length = 681 Score = 380 bits (975), Expect = e-103, Method: Composition-based stats. Identities = 144/493 (29%), Positives = 225/493 (45%), Gaps = 27/493 (5%) Query: 5 TAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYAS 64 + +VW R DLR+ DN AL A VI VFI PE+ + ++ S Sbjct: 2 SGGGCSIVWFRRDLRVEDNPALAAGVRAG--AVIPVFIWAPEEEGPYYPGRVSRWWLKQS 59 Query: 65 LLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLE 124 L + SL G + + D + L T LF+N Y+ + RD + Sbjct: 60 LAHLDSSLRSLGTPLITKRST---DCVSSLLEIVKSTGATLLFFNHLYDPLSLVRDHRAK 116 Query: 125 KRL-QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIR 183 + L + SF+ +L P + + + ++ F + + LP P Sbjct: 117 EALTAQGIAVHSFNADLLYEPWDVNDAQGHSFTTFSAFWDRCLSMPYDPEAPLLP-PKRI 175 Query: 184 LTGPVT--PSNIPRFFDYPFQAIDPM----FPIGEQNALHILRKFCKEKVYYYVEQRDIP 237 G V+ PS+ F D + + + + G NA L F + Y + Sbjct: 176 NPGDVSRCPSDTIAFEDESEKGSNALLARAWTPGWSNADKALTIFINGPLIEYSKNSRKA 235 Query: 238 AIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFS----WLNELIWREFYRH 293 TS LSP+L G +S R+ ++ ++ + V + +L + RE+ R+ Sbjct: 236 DSATTSFLSPHLHFGEVSVRKVFHLVRIKQVLWANEGNKAGEESVNLFLKSIGLREYSRY 295 Query: 294 LMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRL 353 L +P +P + + W D +AW+QG TG+P++DA MR+L GWMH+R+ Sbjct: 296 LSFNHP-YSHERPLLGHLKFFPWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWMHDRI 354 Query: 354 RMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTI 413 R++ +SF VK L + WR G +YF LLD DL S+ GWQ+ + T D + RI NP Sbjct: 355 RVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTLPDGREFDRIDNPQF 414 Query: 414 QGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKN------DLSLNYPLPIV--DHKK 465 +G +FDP G ++R WLPEL +PT++IH P + + +L NYPLPIV D K Sbjct: 415 EGYKFDPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPLPIVEIDAAK 474 Query: 466 AC-HHTLNQYYAA 477 A L++ + A Sbjct: 475 ARLQEALSEMWQA 487 >gi|256961892|ref|ZP_05566063.1| phrB [Enterococcus faecalis Merz96] gi|293382960|ref|ZP_06628878.1| deoxyribodipyrimidine photolyase [Enterococcus faecalis R712] gi|293389551|ref|ZP_06634008.1| deoxyribodipyrimidine photolyase [Enterococcus faecalis S613] gi|312907569|ref|ZP_07766560.1| FAD binding domain of DNA photolyase [Enterococcus faecalis DAPTO 512] gi|312910187|ref|ZP_07769034.1| FAD binding domain of DNA photolyase [Enterococcus faecalis DAPTO 516] gi|256952388|gb|EEU69020.1| phrB [Enterococcus faecalis Merz96] gi|291079625|gb|EFE16989.1| deoxyribodipyrimidine photolyase [Enterococcus faecalis R712] gi|291081168|gb|EFE18131.1| deoxyribodipyrimidine photolyase [Enterococcus faecalis S613] gi|310626597|gb|EFQ09880.1| FAD binding domain of DNA photolyase [Enterococcus faecalis DAPTO 512] gi|311289460|gb|EFQ68016.1| FAD binding domain of DNA photolyase [Enterococcus faecalis DAPTO 516] Length = 477 Score = 379 bits (974), Expect = e-103, Method: Composition-based stats. Identities = 167/478 (34%), Positives = 243/478 (50%), Gaps = 24/478 (5%) Query: 11 LVWLRNDLRITDNKALYAACHNSDA-KVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69 ++W R DLR+ DNKAL A NS A ++I +F P+Q+ Q SA + F +ASL ++ Sbjct: 4 VMWFRRDLRLQDNKALAHALQNSAADELILLFQMNPQQFIQE--SANHNAF-FASLASLK 60 Query: 70 KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQ-RVTKLFYNRQYEINEVRRDKLLEKRLQ 128 + + Q + H + ++ + +++N +RD+ + + Sbjct: 61 ERIDQ-----EAHLQIMVGEPLDLFSRLKRKLPDWQAIYFNEDTCGFGAKRDQQAMRFFE 115 Query: 129 HRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187 I SF D+ L I + Y+V+TP+ + + + + Sbjct: 116 ENNIQSFSFQDAYLHGSEEIKKNDGSKYQVFTPYYNKWKEAPKETPIPVSYTAEKIFSAC 175 Query: 188 VTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSP 247 + P + + + + +GE+ A L F +K+ Y +RD P TS LS Sbjct: 176 LFPEEEAAYREQIARIPLTHYSVGEETARRRLNTFIDQKLQSYENKRDFPYQDQTSHLST 235 Query: 248 YLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPF 307 +L G LS R W L + ++ EL WR+FY + + +P + Sbjct: 236 FLRTGELSIRTIWQEL------ASVPSSLSKETFKKELAWRDFYNMIYSAFPQQ-KEEAI 288 Query: 308 IPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLV 367 I+W D + W++G TG+PIIDAAMRQLN GWMHNRLRMITASFLVK+L + Sbjct: 289 QEKFRYIQWTNDPEMFVKWQKGETGYPIIDAAMRQLNQTGWMHNRLRMITASFLVKNLHI 348 Query: 368 DWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRH 427 DWR GE+YF L+D D A+N GGWQWAASTG D+VPYFRIFNP IQ K+FD G FI+ Sbjct: 349 DWRWGEKYFQKMLIDYDAANNIGGWQWAASTGTDAVPYFRIFNPIIQSKKFDNDGQFIKK 408 Query: 428 WLPELNNVPTQYIHAPHSWLDKND------LSLNYPLPIVDHKKACHHTLNQYYAAKK 479 ++PEL VP +YIH P+ + L NYP PIVD+ + TL Y A+K+ Sbjct: 409 YVPELKQVPQKYIHQPNIMNEALQTQYHVHLGENYPKPIVDYASSKKQTLFLYEASKE 466 >gi|113477930|ref|YP_723991.1| deoxyribodipyrimidine photo-lyase type I [Trichodesmium erythraeum IMS101] gi|110168978|gb|ABG53518.1| Deoxyribodipyrimidine photo-lyase type I [Trichodesmium erythraeum IMS101] Length = 498 Score = 379 bits (974), Expect = e-103, Method: Composition-based stats. Identities = 141/498 (28%), Positives = 239/498 (47%), Gaps = 31/498 (6%) Query: 6 AMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISAR-----QSHF 60 + +V ++W RNDLRI D++ LY A +A++I ++ P Q+ Q ++ F Sbjct: 2 SQNVIILWYRNDLRIHDHEPLYKALK-VNAQIIPIYCLDPRQFSQTDFGFPKTGVFRAKF 60 Query: 61 IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120 + S+ ++ +L + G Q D + Q +F++++ EV+ + Sbjct: 61 LLESIADLRNNLQKLGSNLVIFQ----DKPEIVIPRLAQQLSAKSVFFHQEVTELEVKVE 116 Query: 121 KLLEKRLQH-RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPV 179 +L+ + L+ V KSF L P + Q+ +++T FRK + +N S+P Sbjct: 117 RLVHQALKQIGVRLKSFWGHTLYHPDDLPFEIKQLPELFTTFRKDVEKNSSVNPTFSIPK 176 Query: 180 PAIRLTGPVTPSNIPRFFDYPFQAIDP------MFPIGEQNALHILRKFCKEKVY--YYV 231 L + +P D + F GE A ++ + ++ Y Y Sbjct: 177 KLSSLPK-IDVGELPTLSDLNLEKPPLNSQGVLEFKGGETAAKERVKNYFWQQDYLKVYK 235 Query: 232 EQRD-IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREF 290 E R+ + +S+ SP+L++G LSPR + +KE + + + ELIWR++ Sbjct: 236 ETRNGMLGANYSSKFSPWLALGCLSPRYIYEEVKEYEYQRV--KNQSTYWLIFELIWRDY 293 Query: 291 YRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMH 350 +R + + + K + I W +D + W+ G TGFP++DA MR+L G+M Sbjct: 294 FRFICQKHGNKIFHKSGLQGI-AIPWQEDWEKFRKWQAGQTGFPLVDANMRELLATGFMS 352 Query: 351 NRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFN 410 NR R ASFL K+L ++W++G E+F S L+D D+ SN G W + A GND FR FN Sbjct: 353 NRGRQNVASFLTKNLGINWQMGAEWFESLLIDYDVCSNWGNWNYTAGVGNDGRG-FRYFN 411 Query: 411 PTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND------LSLNYPLPIVDHK 464 Q K +DP+G +++HWLPEL VP +H P L + ++YP PI+D Sbjct: 412 IPKQAKDYDPEGKYVKHWLPELGKVPPAKVHEPWKLLPVEQDRFGVKIGVDYPEPIIDLW 471 Query: 465 KACHHTLNQYYAAKKQSL 482 ++ +Y A + +L Sbjct: 472 QSVKENEKKYNRALQMTL 489 >gi|83718773|ref|YP_442347.1| deoxyribodipyrimidine photolyase [Burkholderia thailandensis E264] gi|257138547|ref|ZP_05586809.1| deoxyribodipyrimidine photolyase [Burkholderia thailandensis E264] gi|83652598|gb|ABC36661.1| deoxyribodipyrimidine photolyase [Burkholderia thailandensis E264] Length = 486 Score = 379 bits (973), Expect = e-103, Method: Composition-based stats. Identities = 153/493 (31%), Positives = 236/493 (47%), Gaps = 24/493 (4%) Query: 1 MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHF 60 M + + + +VW R+DLR++D+ AL A S VI V++ E+ + + Sbjct: 1 MSSFDSTAPAVVWFRDDLRVSDHPALARAAE-SGRPVIGVYVFD-ERAGGRALGGAARWW 58 Query: 61 IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120 ++ SL + +L+ G + D + ++ + +++NR+Y + D Sbjct: 59 LHGSLRALDAALAGLGGRLVLLRGDEADTFVSFVAAL----GAGAVYWNRRYAFAQRALD 114 Query: 121 KLLEKRLQHR-VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPV 179 ++ L R V ++F+ S+L P I+N + Y+V+ + +A ++ + P Sbjct: 115 NAVQTALDARRVAVETFNASLLFEPDDIVNGDGRPYQVFGAYWRAALRRGAPPPPLAAPR 174 Query: 180 PAIRLTGPVTPSNIPRFFD-YPFQAIDPMFPIG--------EQNALHILRKFCKEKVYYY 230 P + D + P + G E A +LR F ++ Y Sbjct: 175 RLNGGALPEALARRRVELDALGLEPTRPDWAGGLRDAWRFGEDAAHSLLRAFVDSRLGGY 234 Query: 231 VEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREF 290 +RD P I TS+LSPY+ G LS RQ W + ++ +L+EL WREF Sbjct: 235 ATERDRPGIASTSRLSPYVRFGNLSVRQIWQAAVDAHAH-RAATQADLDKFLSELGWREF 293 Query: 291 YRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMH 350 + +P + + + + W D L AW++G TG+P +DA MR+L GWMH Sbjct: 294 CWAQLYRFPDLPR-RNLRHTLDGMPWRDDPAGLAAWRRGATGYPFVDAGMRELWATGWMH 352 Query: 351 NRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFN 410 NR RM+ ASFLVK LL+DWR GE +F L+D D ASN WQW A G D+ PYFRIFN Sbjct: 353 NRARMVCASFLVKHLLIDWREGEAWFWDTLVDADAASNAANWQWVAGCGADAAPYFRIFN 412 Query: 411 PTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKN------DLSLNYPLPIVDHK 464 P QGK+FDP G ++R W+PEL +P IH P + L YP+P+V H Sbjct: 413 PVAQGKKFDPDGAYVRRWVPELAGLPPAAIHEPWAAPPAQLAAAGVRLGDTYPVPVVAHD 472 Query: 465 KACHHTLNQYYAA 477 A L+ + A Sbjct: 473 AARRRALDAFATA 485 >gi|315169765|gb|EFU13782.1| FAD binding domain of DNA photolyase [Enterococcus faecalis TX1342] Length = 477 Score = 379 bits (973), Expect = e-103, Method: Composition-based stats. Identities = 167/478 (34%), Positives = 243/478 (50%), Gaps = 24/478 (5%) Query: 11 LVWLRNDLRITDNKALYAACHNSDA-KVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69 ++W R DLR+ DNKAL A NS A ++I +F P+Q+ Q SA + F +ASL ++ Sbjct: 4 VMWFRRDLRLQDNKALAHALQNSAADELILLFQMNPQQFIQE--SANHNAF-FASLASLK 60 Query: 70 KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQ-RVTKLFYNRQYEINEVRRDKLLEKRLQ 128 + + Q + H + ++ + +++N +RD+ + + Sbjct: 61 ERIDQ-----EAHLQIMVGEPLDLFSRLKRKLPDWQAIYFNEDTCGFGAKRDQQAMRFFE 115 Query: 129 HRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187 I SF D+ L I + Y+V+TP+ + + + + Sbjct: 116 ENNIQSFSFQDAYLHGSEEIKKNDGSKYQVFTPYYNKWKEAPKETPIPVSYTAEKIFSAC 175 Query: 188 VTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSP 247 + P + + + + +GE+ A L F +K+ Y +RD P TS LS Sbjct: 176 LFPEEEAAYREQIARIPLTHYSVGEETARRRLNTFIDQKLQSYENKRDFPYQDQTSHLST 235 Query: 248 YLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPF 307 +L G LS R W L ++ EL WR+FY + + +P + Sbjct: 236 FLRTGELSIRTIWQEL------ASAPSSLSKETFKKELAWRDFYNMIYSTFPQQ-KEEAI 288 Query: 308 IPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLV 367 I+W D + W++G TG+PIIDAAMRQLN GWMHNRLRMITASFLVK+L + Sbjct: 289 QEKFRYIQWTNDPEMFAKWQKGETGYPIIDAAMRQLNQTGWMHNRLRMITASFLVKNLHI 348 Query: 368 DWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRH 427 DWR GE+YF L+D D+A+N GGWQWAASTG D+VPYFRIFNP IQ K+FD G FI+ Sbjct: 349 DWRWGEKYFQKMLIDYDVANNIGGWQWAASTGTDAVPYFRIFNPIIQSKKFDNDGQFIKK 408 Query: 428 WLPELNNVPTQYIHAPHSWLDKND------LSLNYPLPIVDHKKACHHTLNQYYAAKK 479 ++PEL VP +YIH P+ + L NYP PIVD+ + TL Y A+K+ Sbjct: 409 YVPELKQVPQKYIHQPNLMNETLQTQYHVHLGENYPKPIVDYASSKKQTLFLYEASKE 466 >gi|305666673|ref|YP_003862960.1| deoxyribodipyrimidine photolyase-class I [Maribacter sp. HTCC2170] gi|88707478|gb|EAQ99722.1| deoxyribodipyrimidine photolyase-class I [Maribacter sp. HTCC2170] Length = 436 Score = 379 bits (973), Expect = e-103, Method: Composition-based stats. Identities = 147/478 (30%), Positives = 225/478 (47%), Gaps = 55/478 (11%) Query: 8 SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67 + + W R DLR+ DN L A V+ +FI E Q + + +FIY ++ Sbjct: 4 KISVFWFRRDLRLEDNTGLLKALQ-GPTPVLPIFIFDTEILCQVPKNDARVNFIYNTIET 62 Query: 68 VQKSLSQKG--IVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125 + ++ +K + +H IE ++ + + +F N YE + ++RD +++ Sbjct: 63 LNTNIKKKHKSSIAIFH-----GKPIEIFNTLIKKHTIDAVFANHDYEPHALKRDTAIKE 117 Query: 126 RLQHR-VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL 184 L + + ++ D V+ I+ Y VYTP++ +N + Sbjct: 118 LLANNSISFHTYKDQVIFEKNEIIKSDKSPYVVYTPYKNKWKENFDPKIHLKNSSNCLES 177 Query: 185 TGPVTPSNI--PRFFDYPFQAIDPMFPIGEQNALHILRKFCKE--KVYYYVEQRDIP-AI 239 V +N+ D F++ P +F + Y R+ P A Sbjct: 178 NNFVNNTNLPFFELRDIGFESSSITVP-----------EFIITITFIEGYETTRNYPGAT 226 Query: 240 QGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYP 299 GTS++ P+L G +S R+ S + NELIWREF+ ++ +P Sbjct: 227 NGTSKIGPHLRFGTVSIRKIVKHAI----------NSDNKVFWNELIWREFFMQILWHFP 276 Query: 300 SVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITAS 359 + + F P ++IEW + + WK G TG+P++DA MR+LN G+MHNR+RM+TAS Sbjct: 277 N-TVNNAFRPKYDRIEWRNNEAEFEKWKTGQTGYPLVDAGMRELNATGFMHNRVRMLTAS 335 Query: 360 FLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFD 419 FL K LL+DWR GE YF +LLD DL++N G WQWAA +G D+ PYFRIFNP+ Q +FD Sbjct: 336 FLCKHLLIDWRWGEAYFAEKLLDFDLSANVGNWQWAAGSGVDAAPYFRIFNPSTQIDKFD 395 Query: 420 PQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477 Q T++ W+PEL NYP IVDHK A L Y A Sbjct: 396 KQKTYVNQWVPELQEF-------------------NYPTQIVDHKFARERCLKVYKEA 434 >gi|256959014|ref|ZP_05563185.1| deoxyribodipyrimidine photolyase [Enterococcus faecalis DS5] gi|257079045|ref|ZP_05573406.1| deoxyribodipyrimidine photolyase [Enterococcus faecalis JH1] gi|294781685|ref|ZP_06747020.1| FAD binding domain of DNA photolyase [Enterococcus faecalis PC1.1] gi|307270984|ref|ZP_07552267.1| FAD binding domain of DNA photolyase [Enterococcus faecalis TX4248] gi|307289140|ref|ZP_07569096.1| FAD binding domain of DNA photolyase [Enterococcus faecalis TX0109] gi|256949510|gb|EEU66142.1| deoxyribodipyrimidine photolyase [Enterococcus faecalis DS5] gi|256987075|gb|EEU74377.1| deoxyribodipyrimidine photolyase [Enterococcus faecalis JH1] gi|294451237|gb|EFG19704.1| FAD binding domain of DNA photolyase [Enterococcus faecalis PC1.1] gi|306499849|gb|EFM69210.1| FAD binding domain of DNA photolyase [Enterococcus faecalis TX0109] gi|306512482|gb|EFM81131.1| FAD binding domain of DNA photolyase [Enterococcus faecalis TX4248] gi|315037012|gb|EFT48944.1| FAD binding domain of DNA photolyase [Enterococcus faecalis TX0027] gi|315164049|gb|EFU08066.1| FAD binding domain of DNA photolyase [Enterococcus faecalis TX1302] gi|329571665|gb|EGG53346.1| putative deoxyribodipyrimidine photo-lyase [Enterococcus faecalis TX1467] Length = 477 Score = 378 bits (972), Expect = e-103, Method: Composition-based stats. Identities = 167/478 (34%), Positives = 243/478 (50%), Gaps = 24/478 (5%) Query: 11 LVWLRNDLRITDNKALYAACHNSDA-KVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69 ++W R DLR+ DNKAL A NS A ++I +F P+Q+ Q SA + F +ASL ++ Sbjct: 4 VMWFRRDLRLQDNKALAHALQNSAADELILLFQMNPQQFIQE--SANHNAF-FASLASLK 60 Query: 70 KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQ-RVTKLFYNRQYEINEVRRDKLLEKRLQ 128 + + Q + H + ++ + +++N +RD+ + + Sbjct: 61 ERIDQ-----EAHLQIMVGEPLDLFSRLKRKLPDWQAIYFNEDTCGFGAKRDQQAMRFFE 115 Query: 129 HRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187 I SF D+ L I + Y+V+TP+ + + + + Sbjct: 116 ENNIQSFSFQDAYLHGSEEIKKNDGSKYQVFTPYYNKWKEAPKETPIPVSYTAEKIFSAC 175 Query: 188 VTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSP 247 + P + + + + +GE+ A L F +K+ Y +RD P TS LS Sbjct: 176 LFPEEEAAYREQIARIPLTHYSVGEKTARRCLNTFIDQKLQSYENKRDFPYQDQTSHLST 235 Query: 248 YLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPF 307 +L G LS R W L + ++ EL WR+FY + + +P + Sbjct: 236 FLRTGELSIRTIWQEL------ASVPSSLSKETFKKELAWRDFYNMIYSAFPQQ-KEEAI 288 Query: 308 IPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLV 367 I+W D + W++G TG+PIIDAAMRQLN GWMHNRLRMITASFLVK+L + Sbjct: 289 QEKFRYIQWTNDPEMFVKWQKGETGYPIIDAAMRQLNQTGWMHNRLRMITASFLVKNLHI 348 Query: 368 DWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRH 427 DWR GE+YF L+D D A+N GGWQWAASTG D+VPYFRIFNP IQ K+FD G FI+ Sbjct: 349 DWRWGEKYFQKMLIDYDAANNIGGWQWAASTGTDAVPYFRIFNPIIQSKKFDNDGQFIKK 408 Query: 428 WLPELNNVPTQYIHAPHSWLDKND------LSLNYPLPIVDHKKACHHTLNQYYAAKK 479 ++PEL VP +YIH P+ + L NYP PIVD+ + TL Y A+K+ Sbjct: 409 YVPELKQVPQKYIHQPNLMNEALQTQYHVHLGENYPKPIVDYASSKKQTLFLYEASKE 466 >gi|209884870|ref|YP_002288727.1| deoxyribodipyrimidine photo-lyase [Oligotropha carboxidovorans OM5] gi|209873066|gb|ACI92862.1| deoxyribodipyrimidine photo-lyase [Oligotropha carboxidovorans OM5] Length = 487 Score = 378 bits (972), Expect = e-103, Method: Composition-based stats. Identities = 153/487 (31%), Positives = 223/487 (45%), Gaps = 21/487 (4%) Query: 6 AMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPE--QWRQHGISARQSHFIYA 63 + S +VW RNDLR++D+ A AA + A +I +FI Q + + A ++ Sbjct: 7 SASSVIVWFRNDLRLSDHAA-LAAAAGTGAPLICLFILDEAAAQSARRPLGAAAKWWLAN 65 Query: 64 SLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFY-NRQYEINEVRRDKL 122 SL + + L ++G + D+ L + + +F+ + + ++ Sbjct: 66 SLRTLDRELRKRGQRLILRRG----DTATILVQIAQEAKAKAVFWLDSEIPAEAACARQV 121 Query: 123 LEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAI 182 + + V +L P I N +V+TPF K + Sbjct: 122 ITALHEIGVETHISRSDLLASPSMIRNKEGHGLRVFTPFWKRVRALGDPPPPLPAMKKLP 181 Query: 183 RLTGPVTPSNIPRFFDYPF-----QAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIP 237 V +I + P + + GE A L F + + Y RD Sbjct: 182 PSVASVESESIEDWQLEPLHPDWAGGLRARWKPGEAGARKKLDAFLDDAIDGYASGRDDL 241 Query: 238 AIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAF 297 A TS LS +L G +SPRQ ++ + +L+EL WREF RHL+ Sbjct: 242 ARDQTSHLSAHLRFGEISPRQVFHATRFAAAH-NPALSHDVEKFLSELGWREFCRHLLFD 300 Query: 298 YPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMIT 357 P + + P + W D L AW+QG TG+PI+DA MR+L G MHNR+RM+ Sbjct: 301 QPDL-HRQDLQPSFDNFPWRTDRAALSAWQQGRTGYPIVDAGMRELWHTGTMHNRVRMVA 359 Query: 358 ASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKR 417 ASFLVK LL+DWR GE +F L+D D SN G WQW A G D+ PYFRIFNP +QG++ Sbjct: 360 ASFLVKHLLIDWREGERWFWDTLVDADPGSNPGNWQWVAGCGADAAPYFRIFNPVLQGEK 419 Query: 418 FDPQGTFIRHWLPELNNVPTQYIHAPHSW----LDKNDLSLN--YPLPIVDHKKACHHTL 471 FDP G ++ W+PEL +P + IH P L ++L YP PIVDHK A L Sbjct: 420 FDPDGAYVMKWVPELAKLPPKLIHQPWEATPMELAAAGITLGKTYPAPIVDHKAARERAL 479 Query: 472 NQYYAAK 478 Y + Sbjct: 480 AAYRKMR 486 >gi|116617921|ref|YP_818292.1| deoxyribodipyrimidine photo-lyase type I [Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293] gi|116096768|gb|ABJ61919.1| deoxyribodipyrimidine photo-lyase type I [Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293] Length = 470 Score = 378 bits (972), Expect = e-103, Method: Composition-based stats. Identities = 176/481 (36%), Positives = 245/481 (50%), Gaps = 26/481 (5%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 V ++W R DLR+ DN AL+ A +S+ +++ VF PEQ + QS F +AS+L Sbjct: 2 VSVMWFRRDLRLEDNIALFNALRHSN-EILCVFHINPEQVTEKST-VNQSAF-FASVLYF 58 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128 + L ++GI D +F+N RD+ + Sbjct: 59 KNKLKKQGINLNIMYGDINDCFASLKQKLP---DWHDIFFNFDERGFGRNRDQKSVAFFE 115 Query: 129 HRVICKSFD--DSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSL---PVPAIR 183 ++ K+ D L + + YKV+TP+ K I+ A + + + + R Sbjct: 116 DKLKVKAHPYIDYNLHGATEVKKDSGAGYKVFTPYFKRWIRQEKPAPVSYVIDKRIKSAR 175 Query: 184 LTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS 243 L P + F D F I G + A +L +F E + Y E+RD PA TS Sbjct: 176 LLFPENEQLLETFIDDRFSFIKKDL--GSETAKKVLNRFINESLDQYDEERDFPANDSTS 233 Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCM 303 LS YL G +S R W + + G +++ EL WR+FY + YP+ + Sbjct: 234 HLSRYLRTGEISIRTVWRAIDQ------SPDSDGKSTFMKELCWRDFYNMIYVMYPNQNV 287 Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363 + ++W + +AW+ G TGFPI+DAAMRQLN GWMHNRLRMI ASFL K Sbjct: 288 -ESVNKDFRHVDWINNEQQFEAWRTGQTGFPIVDAAMRQLNATGWMHNRLRMIVASFLTK 346 Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423 DLL+DWR GE YF ++LLD D ASN GGWQWAASTG DSVPYFRIFNPT+Q K+FD G Sbjct: 347 DLLIDWRWGEAYFHNKLLDYDAASNIGGWQWAASTGTDSVPYFRIFNPTLQSKKFDSNGL 406 Query: 424 FIRHWLPELNNVPTQYIHAPHSWLDKND------LSLNYPLPIVDHKKACHHTLNQYYAA 477 FI+ ++PEL NV + IH P + + NYP PIVDH A ++ Y ++ Sbjct: 407 FIKKYVPELKNVDNKMIHEPGKLSESEQTRFNVRIGQNYPFPIVDHSYARKRAISIYESS 466 Query: 478 K 478 K Sbjct: 467 K 467 >gi|300860779|ref|ZP_07106866.1| putative deoxyribodipyrimidine photo-lyase [Enterococcus faecalis TUSoD Ef11] gi|300849818|gb|EFK77568.1| putative deoxyribodipyrimidine photo-lyase [Enterococcus faecalis TUSoD Ef11] gi|315145075|gb|EFT89091.1| FAD binding domain of DNA photolyase [Enterococcus faecalis TX2141] gi|315160408|gb|EFU04425.1| FAD binding domain of DNA photolyase [Enterococcus faecalis TX0645] Length = 477 Score = 378 bits (972), Expect = e-103, Method: Composition-based stats. Identities = 167/478 (34%), Positives = 243/478 (50%), Gaps = 24/478 (5%) Query: 11 LVWLRNDLRITDNKALYAACHNSDA-KVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69 ++W R DLR+ DNKAL A NS A ++I +F P+Q+ Q SA + F +ASL ++ Sbjct: 4 VMWFRRDLRLQDNKALAHALQNSAADELILLFQMNPQQFIQE--SANHNAF-FASLASLK 60 Query: 70 KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQ-RVTKLFYNRQYEINEVRRDKLLEKRLQ 128 + + Q + H + ++ + +++N +RD+ + + Sbjct: 61 ERIDQ-----EAHLQIMVGEPLDLFSRLKRKLPDWQAIYFNEDTCGFGAKRDQQAMRFFE 115 Query: 129 HRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187 I SF D+ L I + Y+V+TP+ + + + + Sbjct: 116 ENNIQSFSFQDAYLHGSEEIKKNDGSKYQVFTPYYNKWKEAPKETPIPVSYTAEKIFSAC 175 Query: 188 VTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSP 247 + P + + + + +GE+ A L F +K+ Y +RD P TS LS Sbjct: 176 LFPEEEAAYREQIARIPLTHYSVGEETARRRLNTFIDQKLQSYENKRDFPYQDQTSHLST 235 Query: 248 YLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPF 307 +L G LS R W L + ++ EL WR+FY + + +P + Sbjct: 236 FLRTGELSIRTIWQEL------ASVPSSLSKETFKKELAWRDFYNMIYSAFPQQ-KEEAI 288 Query: 308 IPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLV 367 I+W D + W++G TG+PIIDAAMRQLN GWMHNRLRMITASFLVK+L + Sbjct: 289 QEKFRYIQWINDPEMFVKWQKGETGYPIIDAAMRQLNQTGWMHNRLRMITASFLVKNLHI 348 Query: 368 DWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRH 427 DWR GE+YF L+D D A+N GGWQWAASTG D+VPYFRIFNP IQ K+FD G FI+ Sbjct: 349 DWRWGEKYFQKMLIDYDAANNIGGWQWAASTGTDAVPYFRIFNPIIQSKKFDNDGQFIKK 408 Query: 428 WLPELNNVPTQYIHAPHSWLDKND------LSLNYPLPIVDHKKACHHTLNQYYAAKK 479 ++PEL VP +YIH P+ + L NYP PIVD+ + TL Y A+K+ Sbjct: 409 YVPELKQVPQKYIHQPNLMNEALQTQYHVHLGENYPKPIVDYASSKKQTLFLYEASKE 466 >gi|161138118|gb|ABX58030.1| cryptochrome 2 [Triticum aestivum] Length = 650 Score = 378 bits (972), Expect = e-103, Method: Composition-based stats. Identities = 126/492 (25%), Positives = 219/492 (44%), Gaps = 31/492 (6%) Query: 10 HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69 +VW R DLRI DN A D V+ VFI P + + ++ SL + Sbjct: 7 TVVWFRRDLRIDDNP--ALAAAARDGAVLPVFIWCPAEEGRFYTGRCSRWWLKESLAHLA 64 Query: 70 KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLE-KRLQ 128 +SL G + ++ L T++ YN Y+ + RD ++ + L Sbjct: 65 RSLQALGCPLVLIRAQT---TLAALLQCVDSIGATRVVYNHLYDPISLVRDDKIKNELLG 121 Query: 129 HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188 + +SF+ +L P + + + + + + ++ + P + ++G + Sbjct: 122 LGISMQSFNGDLLYEPWEVYDENGLAFTTFKKYWEKCMKLHIDISPSLAPWRLVPVSG-I 180 Query: 189 TPSNIPRFFDYPFQA----------IDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPA 238 + ++ + + G +NA L F + Y + R A Sbjct: 181 ENICSSSIDNLGLESSKDEESSNALLSRAWSPGWRNAEKTLEDFVSHGLLDYSKDRMKVA 240 Query: 239 IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFS----WLNELIWREFYRHL 294 TS LSPYL G +S R+ + ++ + + + KSGA +L + RE+ R+L Sbjct: 241 GTTTSLLSPYLHYGEVSVRKIYQLVRVQQIKWENEGKSGAGESVNLFLLSIGLREYSRYL 300 Query: 295 MAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLR 354 +P + + + W D ++W+QG TG+P++DA MR+L GW HNR+R Sbjct: 301 CFNFP-FTHERSLLGNLKHYPWRADEDRFKSWRQGMTGYPLVDAGMRELWATGWTHNRIR 359 Query: 355 MITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQ 414 +I +SF VK L + W G +YF LLD D+ S+ GWQ+ + + D R+ NP +Q Sbjct: 360 VIVSSFAVKFLQIPWTWGMKYFWDVLLDADIESDILGWQYISGSLPDGHELGRLDNPEVQ 419 Query: 415 GKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDK------NDLSLNYPLPIVDHKKACH 468 G+++DP G ++R W+PEL +P ++IH P +L NYP+PIV+ A Sbjct: 420 GQKYDPDGEYVRTWIPELARMPGEWIHHPWDAPSSILEVAGVELGFNYPMPIVELHTARE 479 Query: 469 ---HTLNQYYAA 477 ++ + Sbjct: 480 CLDDAISTMWQL 491 >gi|292490401|ref|YP_003525840.1| deoxyribodipyrimidine photo-lyase [Nitrosococcus halophilus Nc4] gi|291578996|gb|ADE13453.1| Deoxyribodipyrimidine photo-lyase [Nitrosococcus halophilus Nc4] Length = 477 Score = 378 bits (972), Expect = e-103, Method: Composition-based stats. Identities = 150/451 (33%), Positives = 228/451 (50%), Gaps = 13/451 (2%) Query: 6 AMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASL 65 A LVW R DLR+ DN A AA +VI V+I PE+ A + + SL Sbjct: 2 AQPTALVWFRRDLRLGDNPA-LAAACALGGQVIPVYIDAPEEEGAWPPGAASRWWQHHSL 60 Query: 66 LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125 + L ++ Q + + L + T +F+NR+YE ++RD+ +++ Sbjct: 61 AALDSGLKKRNSRLIVRQGPSH----KALGQLAEETSATHIFWNRRYEPAVIKRDQAIKQ 116 Query: 126 RLQHRV-ICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL 184 +L+ KS + +L P I + Y+++TPF K ++ + P + Sbjct: 117 QLRAAGLTVKSTNALLLFEPWEIAKNDGMPYRIFTPFWKTCLEKGIGRSPFPPPQHLPPV 176 Query: 185 TGPVTPSNIPRFFDYPFQAIDP----MFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ 240 + + P D + GE A F +E + Y ++RD P + Sbjct: 177 NRQLQSEPLSTLGLLPKIPWDQEFYTHWTPGEAGAWRQWECFLEEALGKYHQERDRPDLP 236 Query: 241 GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPS 300 GTS+LSP+L G +SPRQ ++ + +D + +G ++L +L WREF HL+ +P Sbjct: 237 GTSRLSPHLHFGEISPRQIAFQI-QIQMDRRAELTAGGQAYLRQLGWREFAYHLLYHFPE 295 Query: 301 VCMGKPFIPWTEKIEWNKDS-HLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITAS 359 KP W +D L AW+QG TG P++DA MR+L GWMHNR+RMI AS Sbjct: 296 TPE-KPLNEGFTHFPWAEDYGEALTAWQQGRTGIPLVDAGMRELWRTGWMHNRVRMIAAS 354 Query: 360 FLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFD 419 L K+L + W+ GE +F L+D DLASN GWQW A G D+ PYFR+FNP +QGK+FD Sbjct: 355 LLTKNLRIPWQEGERWFWETLVDADLASNTLGWQWVAGCGADAAPYFRVFNPVLQGKKFD 414 Query: 420 PQGTFIRHWLPELNNVPTQYIHAPHSWLDKN 450 P+G +++ W+PEL + Q+IH P + Sbjct: 415 PEGKYVQQWIPELRKISKQHIHEPWKEARQP 445 >gi|147901097|ref|NP_001081129.1| cryptochrome 1 (photolyase-like) [Xenopus laevis] gi|47938667|gb|AAH72120.1| Cry1-A protein [Xenopus laevis] Length = 616 Score = 378 bits (972), Expect = e-103, Method: Composition-based stats. Identities = 130/501 (25%), Positives = 204/501 (40%), Gaps = 38/501 (7%) Query: 7 MSVH-LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASL 65 M V+ + W R LR+ DN AL +D V V+I P + + F+ L Sbjct: 1 MGVNAVHWFRKGLRLHDNPALRECIQGADT-VRCVYILDPWFAGSSNVGINRWRFLLQCL 59 Query: 66 LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125 + +L + + + + ++TKL E RD ++K Sbjct: 60 EDLDANLRKLNSRLFVIRG----QPADVFPRLFKEWKITKLSIEYDSEPFGKERDAAIKK 115 Query: 126 RLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLV-QADLRSLPVPAI-- 182 + S L L+ +++ P Q L+ + D +PV I Sbjct: 116 LASEAGVEVIVRISHTLY---DLDKIIELNGGQPPLTYKRFQTLISKMDPLEIPVETITA 172 Query: 183 ----RLTGPVTPSNIPR-----FFDYPFQA---IDPMFPIGEQNALHILRKFCKEKVYYY 230 + T PV+ + + + F ++P GE AL L + + K + Sbjct: 173 EVMEKCTTPVSDDHDEKYGVPSLEELGFDTEGLPSAVWPGGETEALTRLERHLERKAWVA 232 Query: 231 VEQRDIPAIQG----TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELI 286 +R T+ LSPYL G LS R + +L + + + K S S +L+ Sbjct: 233 NFERPRMNANSLLASTTGLSPYLRFGCLSCRLFYFKLTDLYKKVK-KNSSPPLSLYGQLL 291 Query: 287 WREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTI 346 WREF+ P P +I W+++ L W +G TGFP IDA M QL Sbjct: 292 WREFFYTAATNNPRFDKMDG-NPICVQIPWDRNPEALAKWAEGRTGFPWIDAIMTQLRQE 350 Query: 347 GWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPY 405 GW+H+ R A FL + DL + W G + F LLD D + N G W W S + + Sbjct: 351 GWIHHLARHAVACFLTRGDLWISWEEGMKVFEELLLDADWSVNAGSWMW-LSCSSFFQQF 409 Query: 406 FRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLD------KNDLSLNYPLP 459 F + P GKR DP G +IR +LP L P +YI+ P + + K + +NYP P Sbjct: 410 FHCYCPVGFGKRTDPNGDYIRRYLPILKGFPPKYIYDPWNAPETVQKAAKCIIGVNYPKP 469 Query: 460 IVDHKKACHHTLNQYYAAKKQ 480 +V+H +A + + +Q Sbjct: 470 MVNHAEASRLNIERMKQIYQQ 490 >gi|257419331|ref|ZP_05596325.1| deoxyribodipyrimidine photolyase [Enterococcus faecalis T11] gi|257161159|gb|EEU91119.1| deoxyribodipyrimidine photolyase [Enterococcus faecalis T11] Length = 477 Score = 378 bits (972), Expect = e-103, Method: Composition-based stats. Identities = 167/478 (34%), Positives = 242/478 (50%), Gaps = 24/478 (5%) Query: 11 LVWLRNDLRITDNKALYAACHNSDA-KVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69 ++W R DLR+ DNKAL A NS A ++I +F P+Q+ Q SA + F +ASL + Sbjct: 4 VMWFRRDLRLQDNKALAHALQNSAADELILLFQMNPQQFIQE--SANHNAF-FASLASFK 60 Query: 70 KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQ-RVTKLFYNRQYEINEVRRDKLLEKRLQ 128 + + Q + H + ++ + +++N +RD+ + + Sbjct: 61 ERIDQ-----EAHLQIMVGEPLDLFSRLKRKLPDWQAIYFNEDTCGFGAKRDQQAMRFFE 115 Query: 129 HRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187 I SF D+ L I + Y+V+TP+ + + + + Sbjct: 116 ENNIQSFSFQDAYLHGSEEIKKNDGSRYQVFTPYYNKWKEAPKETPIPVSYTAEKIFSAC 175 Query: 188 VTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSP 247 + P + + + + +GE+ A L F +K+ Y +RD P TS LS Sbjct: 176 LFPEEEAAYGEQIARIPLTHYSVGEETARRRLNTFIDQKLQSYENKRDFPYQDQTSHLST 235 Query: 248 YLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPF 307 +L G LS R W L + ++ EL WR+FY + + +P + Sbjct: 236 FLRTGELSIRTIWQEL------ASVPSSLSKETFKKELAWRDFYNMIYSAFPQQ-KEEAI 288 Query: 308 IPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLV 367 I+W D + W++G TG+PIIDAAMRQLN GWMHNRLRMITASFLVK+L + Sbjct: 289 QEKFRYIQWTNDPEMFVKWQKGETGYPIIDAAMRQLNQTGWMHNRLRMITASFLVKNLHI 348 Query: 368 DWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRH 427 DWR GE+YF L+D D A+N GGWQWAASTG D+VPYFRIFNP IQ K+FD G FI+ Sbjct: 349 DWRWGEKYFQKMLIDYDAANNIGGWQWAASTGTDAVPYFRIFNPIIQSKKFDNDGQFIKK 408 Query: 428 WLPELNNVPTQYIHAPHSWLDKND------LSLNYPLPIVDHKKACHHTLNQYYAAKK 479 ++PEL VP +YIH P+ + L NYP PIVD+ + TL Y A+K+ Sbjct: 409 YVPELKQVPQKYIHQPNLMNEALQTQYHVHLGENYPKPIVDYASSKKQTLFLYEASKE 466 >gi|254424429|ref|ZP_05038147.1| cryptochrome, DASH family [Synechococcus sp. PCC 7335] gi|196191918|gb|EDX86882.1| cryptochrome, DASH family [Synechococcus sp. PCC 7335] Length = 490 Score = 378 bits (971), Expect = e-103, Method: Composition-based stats. Identities = 138/491 (28%), Positives = 235/491 (47%), Gaps = 30/491 (6%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQ-----HGISARQSHFIYASL 65 L+WLRNDLR+ D++ L+ A A +I V+ P Q++ + ++ F+ ++ Sbjct: 4 LLWLRNDLRLHDHEPLHRATEQG-ADIIPVYCFDPRQFQATSFGFPKTGSYRAQFLIETV 62 Query: 66 LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125 ++ L +G Q E + + + ++++ + E+ ++ LE Sbjct: 63 AALKAELRSRGSNLVILQGKPE----EEIPALVKAFDIAAVYWHEEVTPEEIEVEQRLET 118 Query: 126 RLQH-RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL 184 L +V + + + L P + Q+ +V+T FRKA+ +N P L Sbjct: 119 VLNQLKVTSEVYWGATLYHPDDLPFEVSQLPEVFTQFRKAIEKNTQVFPTFPTPEKLPSL 178 Query: 185 TGPVTPSNIPRFFDYPFQAIDPM------FPIGEQNALHILRKFCK--EKVYYYVEQRD- 235 + P +P D + F GE L L+ + +++ Y E R+ Sbjct: 179 PNEIEPGELPSLSDLGLERTPIDEKGVLPFKGGESKGLDRLQHYFWNADRLQRYKETRNG 238 Query: 236 IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLM 295 + +S+ SP+L+ G LSPR+ + ++ + K + + + EL+WR+++R + Sbjct: 239 MLGADYSSKFSPWLANGSLSPRRVYEEVQRYERER--KKNNSTYWMIFELMWRDYFRFVC 296 Query: 296 AFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRM 355 Y K I IEW +D W++G TG+P+IDA MR+L G+M NR R Sbjct: 297 VKYGRKIFRKGGIRGL-PIEWQQDWKRFDLWREGKTGYPLIDANMRELAATGFMSNRGRQ 355 Query: 356 ITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQG 415 ASFL K+L +DWR+G E+F S L+D D+ SN G W + A GND+ FR FN Q Sbjct: 356 NVASFLTKNLGIDWRMGAEWFESLLIDYDVCSNWGNWNYTAGVGNDARG-FRYFNIPKQS 414 Query: 416 KRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND------LSLNYPLPIVDHKKACHH 469 K +D +G +++HWLPEL +P + +H P + L ++YP P+VD +K+ Sbjct: 415 KDYDSEGKYVKHWLPELKTLPAKKVHTPWTLQTVEQKQFNVRLGVDYPNPVVDLQKSVSV 474 Query: 470 TLNQYYAAKKQ 480 +Y A +Q Sbjct: 475 NERRYEDAWQQ 485 >gi|256965091|ref|ZP_05569262.1| deoxyribodipyrimidine photolyase [Enterococcus faecalis HIP11704] gi|307273190|ref|ZP_07554436.1| FAD binding domain of DNA photolyase [Enterococcus faecalis TX0855] gi|256955587|gb|EEU72219.1| deoxyribodipyrimidine photolyase [Enterococcus faecalis HIP11704] gi|306510175|gb|EFM79199.1| FAD binding domain of DNA photolyase [Enterococcus faecalis TX0855] Length = 477 Score = 378 bits (971), Expect = e-102, Method: Composition-based stats. Identities = 167/478 (34%), Positives = 243/478 (50%), Gaps = 24/478 (5%) Query: 11 LVWLRNDLRITDNKALYAACHNSDA-KVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69 ++W R DLR+ DNKAL A NS A ++I +F P+Q+ Q SA + F +ASL ++ Sbjct: 4 VMWFRRDLRLQDNKALAHALQNSAADELILLFQMNPQQFIQE--SANHNAF-FASLASLK 60 Query: 70 KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQ-RVTKLFYNRQYEINEVRRDKLLEKRLQ 128 + + Q + H + ++ + +++N +RD+ + + Sbjct: 61 ERIDQ-----EAHLQIMVGEPLDLFSRLKRKLPDWQAIYFNEDTCGFGAKRDQQAMRFFE 115 Query: 129 HRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187 I SF D+ L I + Y+V+TP+ + + + + Sbjct: 116 ENNIQSFSFQDAYLHGSEEIKKNDGSKYQVFTPYYNKWKEAPKETPIPVSYTAEKIFSAC 175 Query: 188 VTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSP 247 + P + + + + +GE+ A L F +K+ Y +RD P TS LS Sbjct: 176 LFPEEEAAYREQIARIPLTHYSVGEKTARRCLNTFIDQKLQSYENKRDFPYQDQTSHLST 235 Query: 248 YLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPF 307 +L G LS R W L + ++ EL WR+FY + + +P + Sbjct: 236 FLRTGELSIRTIWQEL------ASVPSSLSKETFKKELAWRDFYNMIYSAFPQQ-KEEAI 288 Query: 308 IPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLV 367 I+W D + W++G TG+PIIDAAMRQLN GWMHNRLRMITASFLVK+L + Sbjct: 289 QEKFRYIQWTNDPEMFAKWQKGETGYPIIDAAMRQLNQTGWMHNRLRMITASFLVKNLHI 348 Query: 368 DWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRH 427 DWR GE+YF L+D D A+N GGWQWAASTG D+VPYFRIFNP IQ K+FD G FI+ Sbjct: 349 DWRWGEKYFQKMLIDYDAANNIGGWQWAASTGTDAVPYFRIFNPIIQSKKFDNDGQFIKK 408 Query: 428 WLPELNNVPTQYIHAPHSWLDKND------LSLNYPLPIVDHKKACHHTLNQYYAAKK 479 ++PEL VP +YIH P+ + L NYP PIVD+ + TL Y A+K+ Sbjct: 409 YVPELKQVPQKYIHQPNLMNEALQTQYHVHLGENYPKPIVDYASSKKQTLFLYEASKE 466 >gi|239835007|ref|ZP_04683335.1| Deoxyribodipyrimidine photo-lyase [Ochrobactrum intermedium LMG 3301] gi|239823070|gb|EEQ94639.1| Deoxyribodipyrimidine photo-lyase [Ochrobactrum intermedium LMG 3301] Length = 461 Score = 378 bits (971), Expect = e-102, Method: Composition-based stats. Identities = 158/465 (33%), Positives = 242/465 (52%), Gaps = 15/465 (3%) Query: 10 HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69 LVWLRNDLR+ DN AL+AA A + A+F+ + A ++ SL + Sbjct: 5 ALVWLRNDLRLADNPALHAAFKLGGA-ITALFVHESN-PQLRDPGAAVRWWLEQSLDLLA 62 Query: 70 KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH 129 +SL+++ I +++ ++ + +F+NR+Y E D +++ L+ Sbjct: 63 RSLNERNIELIVADG----EALNTIEQLIEENNFDTVFWNRRYAPQEREVDAVIKSGLKD 118 Query: 130 RVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188 + + +SF ++L+ P I + Y+V+TP+ K+L Q+ V L T Sbjct: 119 KGLRVESFAGNLLVEPWEIKSGNGGSYQVFTPYAKSLRQHGVSRPLPLPDRSVETTTVKH 178 Query: 189 TPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPY 248 TP + + ++ IGE A+ L F + Y RD P + GTS+LS + Sbjct: 179 TPKQKNYKEAVWSRKMSGLWMIGEAAAIDQLYHFFDTTIRDYAGDRDRPDLDGTSKLSAH 238 Query: 249 LSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFI 308 L G +SPRQ W+ D G +L+ELIWR+F+ H + + P + Sbjct: 239 LRFGEISPRQVWHATVSLM-DQDHSTVPGGQKFLSELIWRDFHYHQLYYRPDIAE-IDMR 296 Query: 309 PWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVD 368 W +S + +W++G TG PIIDA MRQL GWMHNR+RM+ AS L K++ +D Sbjct: 297 DTLANTRWQSNSVGINSWRRGKTGIPIIDAGMRQLWATGWMHNRVRMLVASALCKNMQID 356 Query: 369 WRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHW 428 WR GE++F L+D D+ASN G WQW A G D+ PYFR+FNP +QG++FD +G ++R W Sbjct: 357 WREGEKWFWDTLVDADVASNPGNWQWVAGCGMDAAPYFRVFNPVLQGEKFDTKGVYVRKW 416 Query: 429 LPELNNVPTQYIH----APHSWLDKND--LSLNYPLPIVDHKKAC 467 +PE+ +P +IH AP + L + L YPLPI KAC Sbjct: 417 VPEIAALPDCWIHKPFAAPPAVLREAGVVLGQTYPLPIFTPSKAC 461 >gi|73969272|ref|XP_531757.2| PREDICTED: similar to cryptochrome 1 (photolyase-like) isoform 1 [Canis familiaris] Length = 606 Score = 378 bits (971), Expect = e-102, Method: Composition-based stats. Identities = 126/501 (25%), Positives = 203/501 (40%), Gaps = 38/501 (7%) Query: 7 MSVH-LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASL 65 M V+ + W R LR+ DN AL +D + V+I P + + F+ L Sbjct: 1 MGVNAVHWFRKGLRLHDNPALKECIQGADT-IRCVYILDPWFAGSSNVGINRWRFLLQCL 59 Query: 66 LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125 + +L + + + + +TKL E RD ++K Sbjct: 60 EDLDANLRKLNSRLFVIRG----QPADVFPRLFKEWNITKLSIEYDSEPFGKERDAAIKK 115 Query: 126 RLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLV-QADLRSLPVPAI-- 182 + S L L+ +++ P Q L+ + + +PV I Sbjct: 116 LATEAGVEVIVRISHTLY---DLDKIIELNGGQPPLTYKRFQTLISKMEPLEIPVETITS 172 Query: 183 ----RLTGPVTPSNIPR-----FFDYPFQA---IDPMFPIGEQNALHILRKFCKEKVYYY 230 + T P++ + + + F ++P GE AL L + + K + Sbjct: 173 EVVEKCTTPLSDDHDEKYGVPSLEELGFDTDGLPSAVWPGGETEALTRLERHLERKAWVA 232 Query: 231 VEQRDIPAIQGT----SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELI 286 +R + LSPYL G LS R + +L + + + K S S +L+ Sbjct: 233 NFERPRMNANSLLASPTGLSPYLRFGCLSCRLFYFKLTDLYKKVK-KNSSPPLSLYGQLL 291 Query: 287 WREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTI 346 WREF+ P + P +I W+K+ L W +G TGFP IDA M QL Sbjct: 292 WREFFYTAATNNPRFDKMEG-NPICVQIPWDKNPEALAKWAEGRTGFPWIDAIMTQLRQE 350 Query: 347 GWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPY 405 GW+H+ R A FL + DL + W G + F LLD D + N G W W S + + Sbjct: 351 GWIHHLARHAVACFLTRGDLWISWEEGMKVFEELLLDADWSINAGSWMW-LSCSSFFQQF 409 Query: 406 FRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLD------KNDLSLNYPLP 459 F + P G+R DP G +IR +LP L P +YI+ P + + K + +NYP P Sbjct: 410 FHCYCPVGFGRRTDPNGDYIRRYLPVLRGFPAKYIYDPWNAPEGIQKVAKCLIGVNYPKP 469 Query: 460 IVDHKKACHHTLNQYYAAKKQ 480 +V+H +A + + +Q Sbjct: 470 MVNHAEASRLNIERMKQIYQQ 490 >gi|225011846|ref|ZP_03702284.1| Deoxyribodipyrimidine photo-lyase [Flavobacteria bacterium MS024-2A] gi|225004349|gb|EEG42321.1| Deoxyribodipyrimidine photo-lyase [Flavobacteria bacterium MS024-2A] Length = 434 Score = 378 bits (971), Expect = e-102, Method: Composition-based stats. Identities = 141/472 (29%), Positives = 210/472 (44%), Gaps = 46/472 (9%) Query: 8 SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67 V L W R DLRI DN LY A + +VI +FI E ++ + I +L Sbjct: 3 KVTLFWFRRDLRIQDNCGLYHALK-GENRVIPIFIFDKEILKKLPKQDARVEMILLALGA 61 Query: 68 VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127 + ++ + + + Q + K+ N YE RD ++ L Sbjct: 62 IDIAMKRN----RCNVGKYHGTPKAIFSKLIKQWNIEKVICNEDYEPYASERDSEIKTLL 117 Query: 128 QHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVP-AIRLT 185 + I + + D V+ ++ YKVYTP+ + ++ + L+ P + Sbjct: 118 EAAGIQFECYKDQVIFEKEEVVKGDGTPYKVYTPYSRKWLEKYQETPLQFYPSEVELDSL 177 Query: 186 GPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245 D F+ P +F + Y R+ PA+ TS+L Sbjct: 178 ASNESLPDLNLSDLGFETSGIAQPE---------YRFDDTLIDQYEATRNFPALDQTSRL 228 Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305 +L G +S R+ N+ ++L ELIWREF+ ++ +P K Sbjct: 229 GAHLRFGTVSIRRLVNQA----------SSRSNNTFLKELIWREFFMQILWHFP-YTQQK 277 Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365 F P E+I W + + W G TG+P++DA MR+LN G+MHNR+RM+ SFL K L Sbjct: 278 SFKPQYERIIWRNNPDEFEKWCAGETGYPLVDAGMRELNETGFMHNRVRMLVGSFLCKHL 337 Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425 L+DWR GE YF +LLD +++SN G WQW A G D+ PYFRIFNP+ Q K+FD Q +I Sbjct: 338 LIDWRWGESYFAEKLLDYEMSSNVGNWQWVAGCGVDAAPYFRIFNPSEQIKKFDKQLQYI 397 Query: 426 RHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477 + W+P + +YP PIVDHK A L Y A Sbjct: 398 QKWVPNFQEL-------------------DYPSPIVDHKYARERCLTTYKEA 430 >gi|257388583|ref|YP_003178356.1| deoxyribodipyrimidine photo-lyase [Halomicrobium mukohataei DSM 12286] gi|257170890|gb|ACV48649.1| Deoxyribodipyrimidine photo-lyase [Halomicrobium mukohataei DSM 12286] Length = 466 Score = 378 bits (971), Expect = e-102, Method: Composition-based stats. Identities = 150/478 (31%), Positives = 227/478 (47%), Gaps = 17/478 (3%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 + + W R DLR TDN L AA +D+ V+ VF+ + + F+ +L + Sbjct: 1 MRIHWHRRDLRTTDNAGLAAA--TADSPVVPVFVFDDAVLD--HAAPPRVAFMLDALDSL 56 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128 + +G D + + + Y + RD + + L Sbjct: 57 RAQYRDRGSDLVIAHG----DPTAEIPRLAEAFGADGVTWGEAYSGLGIERDIAVRQALD 112 Query: 129 HRVICKS-FDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187 + + DSV PG I + Y V+T F + + P Sbjct: 113 DVGVEREAVTDSVHHRPGEITTNDGDPYSVFTYFGRKWHDREKEDP---YDAPGPDELAD 169 Query: 188 VTPSNIPRFFDYPFQAIDPMFPI-GEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246 V+ +P D F+ P G + A +L FC++ +Y Y ++RD PA TS+LS Sbjct: 170 VSGDPLPSVGDLGFEEPQAEIPPAGTEPARELLDAFCEDDIYRYEDRRDYPADDCTSRLS 229 Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKS-GAFSWLNELIWREFYRHLMAFYPSVCMGK 305 +L G + R+ + R + + + ++L WREFY ++ SV Sbjct: 230 AHLKFGTIGIREVYERTASAAAAADDEERRESVAEFQSQLAWREFYTQVLFANRSVVTDN 289 Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365 + + ++W D LQAWK G TG+PI+DA MRQL ++HNR+RMI ASFL KDL Sbjct: 290 -YKTYERPLQWRDDPEALQAWKDGETGYPIVDAGMRQLRQEAFVHNRVRMIVASFLTKDL 348 Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425 L+DWR G E+F +L+D D A++NGGWQWAASTG D+ PYFRIFNP QG+R+DP +I Sbjct: 349 LIDWRAGYEWFKERLVDHDTANDNGGWQWAASTGTDAQPYFRIFNPMTQGERYDPDAEYI 408 Query: 426 RHWLPELNNVPTQYIHAPH--SWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481 + ++PEL + IH S + + + YP PIVDH + L + A+ +S Sbjct: 409 KTYVPELRDAEPSVIHEWPDLSLTQRRNAAPEYPDPIVDHSERRDQALEMFETARGES 466 >gi|149372178|ref|ZP_01891448.1| deoxyribodipyrimidine photolyase-class I [unidentified eubacterium SCB49] gi|149354945|gb|EDM43507.1| deoxyribodipyrimidine photolyase-class I [unidentified eubacterium SCB49] Length = 435 Score = 378 bits (971), Expect = e-102, Method: Composition-based stats. Identities = 142/473 (30%), Positives = 219/473 (46%), Gaps = 47/473 (9%) Query: 8 SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67 V++ W R DLR+ DN + A H V+ +FI E + + FI+ +L + Sbjct: 4 KVNVFWFRRDLRLDDNLGFFKALH-GKYPVLPIFIFDSEILNELPKDDARVTFIFNTLQK 62 Query: 68 VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127 ++ +L +KG +Q D + + + +Q +T N YE+ RD+ ++ L Sbjct: 63 MRDALQEKGSSLAMYQGKPLDIYKQLIKDFDVQNVIT----NHDYEVYAQDRDEEIKTFL 118 Query: 128 QHR-VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 + + +F D V+ ++ Y VYTP++ + + + L Sbjct: 119 AQKDIDFYTFKDQVIFEKNEVVKDNGDPYVVYTPYKNKWKAAFNEDKHLKIHYTSQHLDA 178 Query: 187 PVTPSNIPRFF--DYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244 + S +P D F P + Y R+ PA+ GTS Sbjct: 179 LIEHSRLPNLSLSDIGFTKSSIEVPS---------YDVRPTLIQEYENTRNFPAVDGTSH 229 Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304 L P+L G +S R+ + E + +++NELIWREF+ ++ +P Sbjct: 230 LGPHLRFGTVSVRKMMRKAISEKNE----------TFMNELIWREFFMQILWHFPK-TQH 278 Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364 F ++I W + + WK+G TG+ ++DA MR+LN G+MHNR+RM+ ASFL K Sbjct: 279 NAFRSKYDRITWRNNEEEFEKWKKGETGYLLVDAGMRELNKTGYMHNRVRMLVASFLCKH 338 Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424 LL+DWR GE YF +LLD + +SN G WQWAA +G D+ PYFRIFNP Q +FD T+ Sbjct: 339 LLIDWRWGEAYFAEKLLDYEQSSNVGNWQWAAGSGVDAAPYFRIFNPITQVDKFDKDKTY 398 Query: 425 IRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477 IR W+PE + YP +VDHK+A L Y A Sbjct: 399 IRKWIPEFE-------------------TDKYPNKMVDHKEARERCLKVYKEA 432 >gi|73969274|ref|XP_862802.1| PREDICTED: similar to cryptochrome 1 (photolyase-like) isoform 3 [Canis familiaris] Length = 613 Score = 378 bits (971), Expect = e-102, Method: Composition-based stats. Identities = 126/501 (25%), Positives = 203/501 (40%), Gaps = 38/501 (7%) Query: 7 MSVH-LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASL 65 M V+ + W R LR+ DN AL +D + V+I P + + F+ L Sbjct: 1 MGVNAVHWFRKGLRLHDNPALKECIQGADT-IRCVYILDPWFAGSSNVGINRWRFLLQCL 59 Query: 66 LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125 + +L + + + + +TKL E RD ++K Sbjct: 60 EDLDANLRKLNSRLFVIRG----QPADVFPRLFKEWNITKLSIEYDSEPFGKERDAAIKK 115 Query: 126 RLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLV-QADLRSLPVPAI-- 182 + S L L+ +++ P Q L+ + + +PV I Sbjct: 116 LATEAGVEVIVRISHTLY---DLDKIIELNGGQPPLTYKRFQTLISKMEPLEIPVETITS 172 Query: 183 ----RLTGPVTPSNIPR-----FFDYPFQA---IDPMFPIGEQNALHILRKFCKEKVYYY 230 + T P++ + + + F ++P GE AL L + + K + Sbjct: 173 EVVEKCTTPLSDDHDEKYGVPSLEELGFDTDGLPSAVWPGGETEALTRLERHLERKAWVA 232 Query: 231 VEQRDIPAIQGT----SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELI 286 +R + LSPYL G LS R + +L + + + K S S +L+ Sbjct: 233 NFERPRMNANSLLASPTGLSPYLRFGCLSCRLFYFKLTDLYKKVK-KNSSPPLSLYGQLL 291 Query: 287 WREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTI 346 WREF+ P + P +I W+K+ L W +G TGFP IDA M QL Sbjct: 292 WREFFYTAATNNPRFDKMEG-NPICVQIPWDKNPEALAKWAEGRTGFPWIDAIMTQLRQE 350 Query: 347 GWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPY 405 GW+H+ R A FL + DL + W G + F LLD D + N G W W S + + Sbjct: 351 GWIHHLARHAVACFLTRGDLWISWEEGMKVFEELLLDADWSINAGSWMW-LSCSSFFQQF 409 Query: 406 FRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLD------KNDLSLNYPLP 459 F + P G+R DP G +IR +LP L P +YI+ P + + K + +NYP P Sbjct: 410 FHCYCPVGFGRRTDPNGDYIRRYLPVLRGFPAKYIYDPWNAPEGIQKVAKCLIGVNYPKP 469 Query: 460 IVDHKKACHHTLNQYYAAKKQ 480 +V+H +A + + +Q Sbjct: 470 MVNHAEASRLNIERMKQIYQQ 490 >gi|257422581|ref|ZP_05599571.1| deoxyribodipyrimidine photolyase [Enterococcus faecalis X98] gi|257164405|gb|EEU94365.1| deoxyribodipyrimidine photolyase [Enterococcus faecalis X98] gi|315155723|gb|EFT99739.1| FAD binding domain of DNA photolyase [Enterococcus faecalis TX0043] Length = 477 Score = 378 bits (970), Expect = e-102, Method: Composition-based stats. Identities = 167/478 (34%), Positives = 242/478 (50%), Gaps = 24/478 (5%) Query: 11 LVWLRNDLRITDNKALYAACHNSDA-KVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69 ++W R DLR+ DNKAL A NS A ++I +F P+Q+ Q SA + F +ASL + Sbjct: 4 VMWFRRDLRLQDNKALAHALQNSAADELILLFQMNPQQFIQE--SANHNAF-FASLASFK 60 Query: 70 KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQ-RVTKLFYNRQYEINEVRRDKLLEKRLQ 128 + + Q + H + ++ + +++N +RD+ + + Sbjct: 61 ERIDQ-----EAHLQIMVGEPLDLFSRLKRKLPDWQAIYFNEDTCGFGAKRDQQAMRFFE 115 Query: 129 HRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187 I SF D+ L I + Y+V+TP+ + + + + Sbjct: 116 ENNIQSFSFQDAYLHGSEEIKKNDGSKYQVFTPYYNKWKEAPKETPIPVSYTAEKIFSAC 175 Query: 188 VTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSP 247 + P + + + + +GE+ A L F +K+ Y +RD P TS LS Sbjct: 176 LFPEEEAAYREQIARIPLTHYSVGEETARRRLNTFIDQKLQSYENKRDFPYQDQTSHLST 235 Query: 248 YLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPF 307 +L G LS R W L + ++ EL WR+FY + + +P + Sbjct: 236 FLRTGELSIRTIWQEL------ASVPSSLSKETFKKELAWRDFYNMIYSAFPQQ-KEEAI 288 Query: 308 IPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLV 367 I+W D + W++G TG+PIIDAAMRQLN GWMHNRLRMITASFLVK+L + Sbjct: 289 QEKFRYIQWTNDPEMFVKWQKGETGYPIIDAAMRQLNQTGWMHNRLRMITASFLVKNLHI 348 Query: 368 DWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRH 427 DWR GE+YF L+D D A+N GGWQWAASTG D+VPYFRIFNP IQ K+FD G FI+ Sbjct: 349 DWRWGEKYFQKMLIDYDAANNIGGWQWAASTGTDAVPYFRIFNPIIQSKKFDNDGQFIKK 408 Query: 428 WLPELNNVPTQYIHAPHSWLDKND------LSLNYPLPIVDHKKACHHTLNQYYAAKK 479 ++PEL VP +YIH P+ + L NYP PIVD+ + TL Y A+K+ Sbjct: 409 YVPELKQVPQKYIHQPNIMNEALQTQYHVHLGENYPKPIVDYASSKKQTLFLYEASKE 466 >gi|86134119|ref|ZP_01052701.1| deoxyribodipyrimidine photo-lyase, class I [Polaribacter sp. MED152] gi|85820982|gb|EAQ42129.1| deoxyribodipyrimidine photo-lyase, class I [Polaribacter sp. MED152] Length = 434 Score = 378 bits (970), Expect = e-102, Method: Composition-based stats. Identities = 147/474 (31%), Positives = 219/474 (46%), Gaps = 49/474 (10%) Query: 8 SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67 +V + W R DLR+ DN Y A S+ KV+ +FI E + + FIY +L + Sbjct: 4 TVTVFWFRRDLRLDDNIGFYNALK-SEHKVLPIFIFDKEILSKLPKDDARVTFIYDTLQE 62 Query: 68 VQKSLSQKGIVFQYHQCSNFDDSIE-WLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 ++ L + F + E + +F NR YE +RD+ +E+ Sbjct: 63 MRGELQDN----YGSSIAMFHGNPESVFSELIKNYTIDAVFTNRDYEPYATKRDESIEQL 118 Query: 127 LQHR-VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185 L + K+F D V+ ++ YKVYTP+ K + + DL+ + L Sbjct: 119 LSENDIEFKTFKDQVIFEKDEVVKKDGDPYKVYTPYMKLWKEQFKKEDLKIYYTNDV-LD 177 Query: 186 GPVTPSNIPRFF--DYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS 243 + S +P D F + + Y + R+ PA TS Sbjct: 178 NLIQNSRLPNLSLSDIGFTKSNQEITP---------YTVTPTLIKEYEDTRNFPAQDATS 228 Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCM 303 L P+L G +S R+ + E ++ + ELIWREF+ ++ +P Sbjct: 229 HLGPHLRFGTVSVRKMVKKAMAESNEV----------FWQELIWREFFMQILWHFPH-TK 277 Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363 + F ++IEW + +AW +G TG+P++DA MRQLN G+MHNR+RM+ SFL K Sbjct: 278 DEAFKSKYDRIEWRNNEREFKAWCKGETGYPLVDAGMRQLNETGFMHNRIRMLVGSFLCK 337 Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423 LL+DWR GE YF +L D ++ASN G WQW A +G D+ PYFRIFNPT Q K+FD Sbjct: 338 HLLIDWRWGEAYFAEKLHDYEMASNVGNWQWVAGSGVDASPYFRIFNPTTQIKKFDKDLK 397 Query: 424 FIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477 +I+ W+ K+ +YP I+DHK A L Y AA Sbjct: 398 YIKKWV-------------------KDYEKSSYPKEIIDHKSARERCLTVYKAA 432 >gi|15341190|gb|AAK94665.1| cryptochrome 1 [Xenopus laevis] Length = 616 Score = 378 bits (970), Expect = e-102, Method: Composition-based stats. Identities = 130/501 (25%), Positives = 204/501 (40%), Gaps = 38/501 (7%) Query: 7 MSVH-LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASL 65 M V+ + W R LR+ DN AL +D V V+I P + + F+ L Sbjct: 1 MGVNAVHWFRKGLRLHDNPALRECIQGADT-VRCVYILDPWFAGSSNVGINRWRFLLQCL 59 Query: 66 LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125 + +L + + + + ++TKL E RD ++K Sbjct: 60 EDLDANLRKLNSRLFVIRG----QPADVFPRLFKEWKITKLSIEYDSEPFGKERDAAIKK 115 Query: 126 RLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLV-QADLRSLPVPAI-- 182 + S L L+ +++ P Q L+ + D +PV I Sbjct: 116 LASEAGVEVIVRISHTLY---DLDKIIELNGGQPPLTYKRFQTLISKMDPLEIPVETITA 172 Query: 183 ----RLTGPVTPSNIPR-----FFDYPFQA---IDPMFPIGEQNALHILRKFCKEKVYYY 230 + T PV+ + + + F ++P GE AL L + + K + Sbjct: 173 EVMEKCTTPVSDDHDEKYGVPSLEELGFDTEGLPSAVWPGGETEALTRLERHLERKAWVA 232 Query: 231 VEQRDIPAIQG----TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELI 286 +R T+ LSPYL G LS R + +L + + + K S S +L+ Sbjct: 233 NFERPRMNANSLLASTTGLSPYLRFGCLSCRLFYFKLTDLYKKVK-KNSSPPLSLYGQLL 291 Query: 287 WREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTI 346 WREF+ P P +I W+++ L W +G TGFP IDA M QL Sbjct: 292 WREFFYTAATNNPCFDKMDG-NPICVQIPWDRNPEALAKWAEGRTGFPWIDAIMTQLRQE 350 Query: 347 GWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPY 405 GW+H+ R A FL + DL + W G + F LLD D + N G W W S + + Sbjct: 351 GWIHHLARHAVACFLTRGDLWISWEEGMKVFEELLLDADWSVNAGSWMW-LSCSSFFQQF 409 Query: 406 FRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLD------KNDLSLNYPLP 459 F + P GKR DP G +IR +LP L P +YI+ P + + K + +NYP P Sbjct: 410 FHCYCPVGFGKRTDPNGDYIRRYLPILKGFPPKYIYDPWNAPETVQKAAKCIIGVNYPKP 469 Query: 460 IVDHKKACHHTLNQYYAAKKQ 480 +V+H +A + + +Q Sbjct: 470 MVNHAEASRLNIERMKQIYQQ 490 >gi|161521234|ref|YP_001584661.1| deoxyribodipyrimidine photo-lyase [Burkholderia multivorans ATCC 17616] gi|189352592|ref|YP_001948219.1| deoxyribodipyrimidine photo lyase [Burkholderia multivorans ATCC 17616] gi|160345284|gb|ABX18369.1| Deoxyribodipyrimidine photo-lyase [Burkholderia multivorans ATCC 17616] gi|189336614|dbj|BAG45683.1| deoxyribodipyrimidine photo lyase [Burkholderia multivorans ATCC 17616] Length = 476 Score = 378 bits (970), Expect = e-102, Method: Composition-based stats. Identities = 154/466 (33%), Positives = 229/466 (49%), Gaps = 20/466 (4%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 MSV +V R DLR++D+ AL AAC DA V+ V++ TP++ A +++ SL Sbjct: 1 MSVAIVLFRRDLRLSDHPALSAACARHDA-VLPVYVHTPDEDAIWSPGAASRWWLHHSLT 59 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 + ++L ++G Q D + + +++ R+YE + RD L+ Sbjct: 60 SLDRALREQGGRLLAMQS----DPTIAVPALARAVDAQGVYWTRRYEPAAIARDAALKST 115 Query: 127 LQHRVIC-KSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185 L+ + I S+ ++ P ++ A Q Y+V+TPF + L +L P+PA R Sbjct: 116 LRAQGIAAHSYPGALWQEPWTLATDAGQPYRVFTPFWRKLRTSLSDCH----PLPAARPR 171 Query: 186 GPVTPSNIPRFFDYPF-------QAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPA 238 +T + + + GE A L +F E + Y + RD PA Sbjct: 172 RWMTTDDSTAVEALGLLPRIRWDAGLADAWRPGEGGAWERLEQFVDEALAEYGDARDAPA 231 Query: 239 IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFY 298 GTS+LS +L G ++P Q L+E + +L EL WREF HL+ + Sbjct: 232 RLGTSRLSAHLHYGEITPTQILRTLQERVARTSGSVRPDLEPFLRELGWREFAHHLLYHF 291 Query: 299 PSVCMGKPFIPWTEKIEW-NKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMIT 357 P F + W D L W+QG TG P++DA MRQL GWMHNR+RM+ Sbjct: 292 PHTTDAN-FDARFDAFAWAPDDGEQLARWQQGRTGIPLVDAGMRQLWQTGWMHNRVRMVV 350 Query: 358 ASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKR 417 ASFL K+L WR G +F L+D DLA+N GWQW A G D+ PYFR+FNP +Q + Sbjct: 351 ASFLTKNLRQHWRHGARWFWDTLVDADLANNTLGWQWVAGCGADAAPYFRVFNPYLQAAK 410 Query: 418 FDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDH 463 FDP +++ WLPEL+ +P +H P + YP P+VD Sbjct: 411 FDPDAAYLKRWLPELSRLPADVLHRPWKH-SAALAACGYPTPMVDL 455 >gi|298675064|ref|YP_003726814.1| deoxyribodipyrimidine photo-lyase [Methanohalobium evestigatum Z-7303] gi|298288052|gb|ADI74018.1| Deoxyribodipyrimidine photo-lyase [Methanohalobium evestigatum Z-7303] Length = 459 Score = 378 bits (970), Expect = e-102, Method: Composition-based stats. Identities = 151/474 (31%), Positives = 232/474 (48%), Gaps = 24/474 (5%) Query: 10 HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPE-QWRQHGISARQSHFIYASLLQV 68 + R DLR+ DN L A NS+ VI FI P + + F+ SL + Sbjct: 7 SIFIFRRDLRVDDNTGLDYALENSEY-VIPCFIFDPRLIEKNDNFNPNSFQFLIESLEDL 65 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128 + L+ KG + + + + + +F NR Y +RD+ +K + Sbjct: 66 KHQLNDKGAKLYLFHG----IAENVVTNLINKNLIDAVFVNRDYTPFSKKRDEAFKKACE 121 Query: 129 -HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187 + V S +D +L P I Y V+TPF K + V +L + TG Sbjct: 122 MYNVDFISCNDLLLNNPDKIKTQKGTPYTVFTPFFKKASKFDV--NLPEMSSKQNFYTGK 179 Query: 188 VTPSNIPRFFDYPFQAIDPMF-PIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246 + + P++ G NAL IL ++ Y +RD P + T+ LS Sbjct: 180 IENELNDTDHFLKAKRNKPLYVKGGRSNALKILENL--DEFKNYENERDYPFLDATTGLS 237 Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP 306 + G +S R+ + + ++ + + +L WR+FY +L YP + + Sbjct: 238 AHNKFGTISIREFYYTVIDKL--------GISHPLITQLYWRDFYTYLAHHYPYI-FKQS 288 Query: 307 FIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLL 366 F + IEW+ DS + W G TGFPI+DA +R++N G+MHNR+RMITASFLVKDL Sbjct: 289 FKKKFDSIEWDNDSDKFKKWCAGETGFPIVDAGIREMNYTGYMHNRVRMITASFLVKDLH 348 Query: 367 VDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIR 426 +DW+ GE+YF +L+D D + N G WQW+ASTG D+ P+FRIFNP Q K+FD + +I+ Sbjct: 349 IDWKWGEQYFARKLVDYDKSVNIGNWQWSASTGPDAQPFFRIFNPWSQQKKFDSECIYIK 408 Query: 427 HWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQ 480 W+ EL NV + IH + +KN YP PI++HK +L + A ++ Sbjct: 409 KWIEELRNVSCKSIH---NLENKNTFIPGYPEPIINHKTEREKSLAVFRLANQK 459 >gi|227344531|gb|ACP27856.1| blue light photoreceptor [Fragaria vesca] gi|270303922|gb|ACZ71184.1| blue light photoreceptor [Fragaria vesca] Length = 645 Score = 378 bits (970), Expect = e-102, Method: Composition-based stats. Identities = 133/509 (26%), Positives = 222/509 (43%), Gaps = 39/509 (7%) Query: 1 MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHF 60 M ++ +VW R DLRI DN A D V V+I P+ + Sbjct: 1 MGSSNK---TIVWFRRDLRIEDNP--ALAAAARDGAVFPVYIWCPKDEGHFYPGRVSRWW 55 Query: 61 IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120 + SL + +SL G + D ++ L TK+ +N Y+ + RD Sbjct: 56 LKQSLAHLDQSLKSLGAQLALIKT---DSTVSALLDCIQAIGATKVVFNHLYDPVSLVRD 112 Query: 121 KLLE-KRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPV 179 ++ K ++ + +S++ +L P + + Q + + + + + P Sbjct: 113 HNIKGKLVELGISVQSYNADLLHEPWEVYDAKGQTFTTFKEYWDKCLNMERELVTFLPPW 172 Query: 180 PAIRLTGPVTPSNIPRFFDYPFQA---------IDPMFPIGEQNALHILRKFCKEKVYYY 230 ++ TG V + + + + G A L +F + Y Sbjct: 173 KLLQATGMVAK---YSLEELGLENETEKSSNALLGRAWTPGWSQADKALTEFFDVHLLDY 229 Query: 231 VEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEF----VDLLIKPKSGAFSWLNELI 286 + R TS LSPYL G +S R+ + + + + + +L + Sbjct: 230 AKNRTKLGGNSTSLLSPYLHFGEVSVRKVFQLARMKQILFAKEGNSLGEESVTLFLRAIG 289 Query: 287 WREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTI 346 REF R++ +P K + W D +AW+QG TG+P++DA MR+L Sbjct: 290 LREFSRYICFNFP-FTHEKLLLSNLRFFPWKADQGRFKAWRQGRTGYPLVDAGMRELWAT 348 Query: 347 GWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYF 406 GW+HNR+R+I +SF VK LL+ W+ G +YF L+D DL S+ GWQ+ + + D Sbjct: 349 GWIHNRIRVIVSSFAVKVLLLPWKWGMKYFWDTLMDADLESDILGWQYISGSLPDGHELE 408 Query: 407 RIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLD------KNDLSLNYPLPI 460 R+ +P +QG +FDP G ++RHWLPEL +PT++IH P D +L +NYP PI Sbjct: 409 RLDSPEVQGSKFDPDGEYVRHWLPELARLPTEWIHHPWDTPDNVLKVSGVELGVNYPRPI 468 Query: 461 VDHKKACHH---TLNQYY----AAKKQSL 482 ++ A + + + AAK +L Sbjct: 469 IEIDLARERLTEAIFKMWEIEAAAKAANL 497 >gi|206560613|ref|YP_002231378.1| putative DNA photolyase [Burkholderia cenocepacia J2315] gi|198036655|emb|CAR52553.1| putative DNA photolyase [Burkholderia cenocepacia J2315] Length = 494 Score = 378 bits (970), Expect = e-102, Method: Composition-based stats. Identities = 148/479 (30%), Positives = 236/479 (49%), Gaps = 23/479 (4%) Query: 2 KATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFI 61 A ++++ +VW R+DLR+TD AL A S ++ VF+ + ++ Sbjct: 4 PAQSSVAPAIVWFRDDLRVTDQPALTLAVE-SGRPLVCVFVDDTGAGAGPALGGAARWWL 62 Query: 62 YASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDK 121 + SL + +L++ G + D+ ++ +++NR+Y + D Sbjct: 63 HGSLAGLDAALARHGGRLLLLRG----DAQREIERLVRDTGAAAVYWNRRYAQPQRDADA 118 Query: 122 LLEKRLQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVP 180 L+ L+ R + +S + S+L P +L + Y+V+T + +A ++ A P Sbjct: 119 ALKTSLKARGVAVESSNGSLLNEPWEVLTGSGGPYQVFTAYWRAARRDRAVAAPLPAPGQ 178 Query: 181 AIRLTGP----------VTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYY 230 + + P + P D+ D E A L F + Y Sbjct: 179 IVFHSWPKAVRDRALALDALALRPHAPDWAGGLRDAWPAPDEAGAHAQLDAFLTTSLAGY 238 Query: 231 VEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREF 290 + RD P TS+LSP+L G +SPRQ W+ ++ + A +L+EL WREF Sbjct: 239 ADARDRPDRPATSRLSPFLRFGNVSPRQVWHAVQGAASAGGAAYAADADKFLSELGWREF 298 Query: 291 YRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMH 350 L+ +P++ F + + W D L+AW++G TG+P++DA +R+L T GWMH Sbjct: 299 SYTLLYHFPTLATDN-FRAQFDAMPWRDDPAALRAWQRGRTGYPLVDAGLRELWTTGWMH 357 Query: 351 NRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFN 410 NR+RM+ ASFL+K LL+DWR GE +F L+D D A+N WQW A G D+ PYFRIFN Sbjct: 358 NRVRMVVASFLIKHLLIDWRAGEAWFRDTLVDADPANNAASWQWVAGCGADAAPYFRIFN 417 Query: 411 PTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSW------LDKNDLSLNYPLPIVDH 463 P QG++FDP G ++R W+PEL + IHAP L ++YP P+V+H Sbjct: 418 PVAQGQKFDPDGAYVRRWVPELAGLDDASIHAPWEASPLALEAAGIRLGIDYPAPLVEH 476 >gi|194365340|ref|YP_002027950.1| Deoxyribodipyrimidine photo-lyase [Stenotrophomonas maltophilia R551-3] gi|194348144|gb|ACF51267.1| Deoxyribodipyrimidine photo-lyase [Stenotrophomonas maltophilia R551-3] Length = 471 Score = 378 bits (970), Expect = e-102, Method: Composition-based stats. Identities = 152/476 (31%), Positives = 228/476 (47%), Gaps = 15/476 (3%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 MSV LVW R DLR+ DN AL AA ++ V+ V+I P + + A + + SL Sbjct: 1 MSVALVWFRRDLRLQDNPALQAAL-DAGHDVVPVYIHAPHEEGEWVPGAASDAWRHRSLA 59 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 + L +G DS+ L + Q +F+NR+YE RD +++ Sbjct: 60 ALDAYLRSRGSSLVLRSG----DSLATLQALIKQTGAEAVFWNRKYEPATQPRDATIKRT 115 Query: 127 LQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVP-AIRL 184 L+ + I +S + S+L P I Q YKV+TP+ + ++ + L++ P Sbjct: 116 LREQGIDAQSCNGSLLFEPWDIATQQGQPYKVFTPYWRNVLSHWRLPALQAAPKALTAHS 175 Query: 185 TGPVTPSNIPRFFDYPFQ-AIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS 243 + + + + GE AL L F + Y EQRD+P GTS Sbjct: 176 VDSLGLEELRLAPTLDWDIGFWEHWQPGEAGALEALSVFEDGALRGYREQRDLPDRVGTS 235 Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCM 303 ++SP+L G ++P + + L+ G +L +L WR+F HL+ +P Sbjct: 236 RMSPHLHFGEIAPWRIAHALEGLRSAGTDADIDG---YLRQLGWRDFAYHLLHHFPKTPT 292 Query: 304 GKPFIPWTEKIEWNK-DSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLV 362 + P ++ W + L W++G TG PI+DA +R+L G+MHNR+RMI AS+L Sbjct: 293 -ENLNPRFDRFPWATPSAAQLHDWQRGNTGVPIVDAGLRELWHTGYMHNRVRMIVASYLC 351 Query: 363 KDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQG 422 K L W G +F L+D DLA+N GWQW A TG D+ PYFR+FNP Q ++FDPQ Sbjct: 352 KHLRAHWLHGARWFWDTLVDADLANNTMGWQWVAGTGADAAPYFRVFNPVTQAEKFDPQA 411 Query: 423 TFIRHWLPELNNVPTQYIHAPHSW-LDKNDLSLNYPL-PIVDHKKACHHTLNQYYA 476 +I W+PEL +P + AP L + YP P+VD L Y Sbjct: 412 RYISRWVPELAALPVKARFAPWQHPLLLAAHAPGYPRTPLVDLAVGRDAALAAYRQ 467 >gi|207744141|ref|YP_002260533.1| deoxyribodipyrimidine photolyase, class 1 protein [Ralstonia solanacearum IPO1609] gi|206595545|emb|CAQ62472.1| putative deoxyribodipyrimidine photolyase, class 1 protein [Ralstonia solanacearum IPO1609] Length = 522 Score = 378 bits (970), Expect = e-102, Method: Composition-based stats. Identities = 170/490 (34%), Positives = 242/490 (49%), Gaps = 31/490 (6%) Query: 10 HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWR---QHGI-SARQSHFIYASL 65 LVW R DLR D+ AL+ A + +V F+ HG+ + R+ FI A++ Sbjct: 27 GLVWFRRDLRHIDHAALHYALRHC-REVFCAFVFDRGILDPLLAHGLRADRRVEFIRAAV 85 Query: 66 LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125 ++ +L + G D + + S Q V +F N E + RD + Sbjct: 86 EALRGALREAGGELIVLH----DHAHHAIPSLAQQLGVEAVFANHDEEPAALARDAAVRD 141 Query: 126 RLQHR-VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL 184 L + F D V+ +LN + Y V+TP++ A + + DLR+ P+ Sbjct: 142 ALARQPCAWLDFKDQVIFERAEVLNGQGKPYGVFTPYKNAWLAAVSPFDLRAYPIEPHLH 201 Query: 185 TGPVTPSNI----PRFFDYPFQAID---PMFPIGEQNALHILRKFCKEKVYYYVEQRDIP 237 P + P F + P G A +L F ++ Y +RD P Sbjct: 202 ALARPPQGLAPATPSLEAMGFARSNLSAIALPTGMSGAEALLDDF-ATRMDDYHARRDYP 260 Query: 238 AIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAF 297 A++G S LS +L G +S R L ++ GA +WL+ELIWR+FY ++ Sbjct: 261 AVRGPSYLSTHLRFGTVSIRT----LAAHAHAAMLHGSRGAATWLSELIWRDFYFMILHH 316 Query: 298 YPSVCMGKPFIPWTEKIEWNKDSH---LLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLR 354 P + G F P ++I W AW+ TG+P++DAAM Q+ G+MHNRLR Sbjct: 317 RPDLAGGASFRPEFDRIRWVDGDAGDVRFAAWRDARTGYPLVDAAMLQIRQSGYMHNRLR 376 Query: 355 MITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQ 414 M+ ASFL+KDL VDWR GE YF L D D A+NNGGWQWAAS+G D+ P+FRIFNP Q Sbjct: 377 MVAASFLIKDLGVDWRRGEHYFADALNDFDFAANNGGWQWAASSGCDAQPWFRIFNPVTQ 436 Query: 415 GKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDK------NDLSLNYPLPIVDHKKACH 468 ++FDPQG FIR +LP+L +P +Y+HAP + L YP PIV+H A Sbjct: 437 SEKFDPQGHFIRKYLPQLAKLPDRYLHAPWTAPADVLKTAGVALGETYPRPIVEHAAARA 496 Query: 469 HTLNQYYAAK 478 TL +Y AK Sbjct: 497 ATLERYAPAK 506 >gi|33864755|ref|NP_896314.1| deoxyribodipyrimidine photolyase [Synechococcus sp. WH 8102] gi|33632278|emb|CAE06734.1| probable deoxyribodipyrimidine photolyase [Synechococcus sp. WH 8102] Length = 477 Score = 378 bits (970), Expect = e-102, Method: Composition-based stats. Identities = 164/480 (34%), Positives = 233/480 (48%), Gaps = 22/480 (4%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQH----GISARQSHFIYASLL 66 L W R DLR+TDN L AA S A V V++ P+ ++ + F+ SL+ Sbjct: 7 LFWHRRDLRLTDNLGLAAAAAISPA-VTGVYVLDPQVISPSEHLLPMAPARLWFLIESLI 65 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 ++Q+ G + D ++ L + + +NR E RD+ + +R Sbjct: 66 ELQQRWRDAGSRLLVVEG----DPVQLLPQLAERIAAEAVVWNRDVEPYARERDRQVAQR 121 Query: 127 LQHRV-ICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPA--IR 183 LQ D +L+ P + Y+VY PF + + ++P PA + Sbjct: 122 LQADGRKVVVDWDQLLIAPELLKTGGGDPYRVYGPFLRNWRGQVQAKQPVTVPAPAGLVD 181 Query: 184 LTGPVTPSN---IPRFFDYPFQAIDPMFP-IGEQNALHILRKFCKEKVYYYVEQRDIPAI 239 L PS + R + F+ + GE A+ L FC ++ Y R+ P + Sbjct: 182 LDPAAVPSGEPLMARRDSHGFKGTELCPCRPGEAAAMQQLTSFCDGALFGYEPDRNFPGV 241 Query: 240 QGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPK-SGAFSWLNELIWREFYRHLMAFY 298 GTS LS LS+G LSPRQ W+ +E + + W EL WREFY+ + + Sbjct: 242 VGTSYLSAALSVGTLSPRQAWSAAQEAREQARSEEQLHAIAVWEQELCWREFYQQALFHF 301 Query: 299 PSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITA 358 P + G P+ + W + W++G TG PIIDAAMRQLN GWMHNR RMI A Sbjct: 302 PELSDG-PYREQWRRFPWENNEDWFDFWREGQTGMPIIDAAMRQLNQTGWMHNRCRMIVA 360 Query: 359 SFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRF 418 S+LVKDL+ DWR GE FM +DGDLA+NNGGWQW+AS+G D P RIFNP Q +F Sbjct: 361 SYLVKDLICDWRWGERAFMELEVDGDLAANNGGWQWSASSGMDPKP-LRIFNPATQASKF 419 Query: 419 DPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478 D G +IR W+PEL +V T+ + S +YP P+V+HK Y + Sbjct: 420 DAAGDYIRQWVPELRHVNTKDL---LSGEIGALERRDYPEPLVNHKTQQAKFKALYATIR 476 >gi|6681031|ref|NP_031797.1| cryptochrome-1 [Mus musculus] gi|81882230|sp|P97784|CRY1_MOUSE RecName: Full=Cryptochrome-1 gi|5081813|gb|AAD39548.1|AF156986_1 cryptochrome 1 [Mus musculus] gi|1816439|dbj|BAA19175.1| photolyase/blue-light receptor homolog [Mus musculus] gi|18380944|gb|AAH22174.1| Cryptochrome 1 (photolyase-like) [Mus musculus] gi|55716088|gb|AAH85499.1| Cryptochrome 1 (photolyase-like) [Mus musculus] gi|74194028|dbj|BAE36931.1| unnamed protein product [Mus musculus] gi|148689469|gb|EDL21416.1| cryptochrome 1 (photolyase-like) [Mus musculus] Length = 606 Score = 378 bits (970), Expect = e-102, Method: Composition-based stats. Identities = 128/502 (25%), Positives = 200/502 (39%), Gaps = 40/502 (7%) Query: 7 MSVH-LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASL 65 M V+ + W R LR+ DN AL +D + V+I P + + F+ L Sbjct: 1 MGVNAVHWFRKGLRLHDNPALKECIQGADT-IRCVYILDPWFAGSSNVGINRWRFLLQCL 59 Query: 66 LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125 + +L + + + + +TKL E RD ++K Sbjct: 60 EDLDANLRKLNSRLFVIRG----QPADVFPRLFKEWNITKLSIEYDSEPFGKERDAAIKK 115 Query: 126 RLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185 + S L L+ +++ P Q LV + L +PA +T Sbjct: 116 LATEAGVEVIVRISHTLY---DLDKIIELNGGQPPLTYKRFQTLVS-KMEPLEMPADTIT 171 Query: 186 GPVTPSNI-------------PRFFDYPFQA---IDPMFPIGEQNALHILRKFCKEKVYY 229 V + P + F ++P GE AL L + + K + Sbjct: 172 SDVIGKCMTPLSDDHDEKYGVPSLEELGFDTDGLSSAVWPGGETEALTRLERHLERKAWV 231 Query: 230 YVEQRDIPAIQGT----SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNEL 285 +R + LSPYL G LS R + +L + + + K S S +L Sbjct: 232 ANFERPRMNANSLLASPTGLSPYLRFGCLSCRLFYFKLTDLYKKVK-KNSSPPLSLYGQL 290 Query: 286 IWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNT 345 +WREF+ P + P +I W+K+ L W +G TGFP IDA M QL Sbjct: 291 LWREFFYTAATNNPRFDKMEG-NPICVQIPWDKNPEALAKWAEGRTGFPWIDAIMTQLRQ 349 Query: 346 IGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVP 404 GW+H+ R A FL + DL + W G + F LLD D + N G W W S + Sbjct: 350 EGWIHHLARHAVACFLTRGDLWISWEEGMKVFEELLLDADWSINAGSWMW-LSCSSFFQQ 408 Query: 405 YFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLD------KNDLSLNYPL 458 +F + P G+R DP G +IR +LP L P +YI+ P + + K + +NYP Sbjct: 409 FFHCYCPVGFGRRTDPNGDYIRRYLPVLRGFPAKYIYDPWNAPEGIQKVAKCLIGVNYPK 468 Query: 459 PIVDHKKACHHTLNQYYAAKKQ 480 P+V+H +A + + +Q Sbjct: 469 PMVNHAEASRLNIERMKQIYQQ 490 >gi|194290487|ref|YP_002006394.1| deoxyribodipyrimidine photolyase (photoreactivation), fad-binding [Cupriavidus taiwanensis LMG 19424] gi|193224322|emb|CAQ70333.1| deoxyribodipyrimidine photolyase (photoreactivation), FAD-binding [Cupriavidus taiwanensis LMG 19424] Length = 519 Score = 377 bits (969), Expect = e-102, Method: Composition-based stats. Identities = 179/491 (36%), Positives = 254/491 (51%), Gaps = 28/491 (5%) Query: 10 HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGI----SARQSHFIYASL 65 LVW R DLR TD+ AL+ A + A+V VF+ + + R+ FI SL Sbjct: 23 GLVWFRRDLRATDHAALHYALRHC-AQVWCVFVFDRDILEPLLARGLQADRRIEFIRQSL 81 Query: 66 LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125 +++ +L+ G D + + + +F N YE RD+ + + Sbjct: 82 VELAGTLAAAGGGLIVLH----DRAQTAIPALARALDAEAVFANHDYEPAANARDEAVRQ 137 Query: 126 RLQHRVICK-SFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPV----P 180 L + +F D + ILN + + V+TP++ A ++ DLR PV P Sbjct: 138 ALAAQACALFTFKDQAIFERDEILNGQGKPFSVFTPYKNAWLRAAEPFDLRPYPVEPYLP 197 Query: 181 AIRLTGPVTPSNIPRFFDYPFQAID---PMFPIGEQNALHILRKFCKEKVYYYVEQRDIP 237 A+ +P F+A + P G A + +F ++ Y +RD P Sbjct: 198 ALAPVPAAYRLPVPTIAQLGFRASNLAEIAMPTGASGAQALFEEF-TGRMGDYGRRRDYP 256 Query: 238 AIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAF 297 A++G S LS +L G +S R R+ E + +GA WL+ELIWR+FY ++ Sbjct: 257 ALRGPSYLSVHLRFGTISIRTLA-RVAHEAMLRGGADSAGAAVWLSELIWRDFYFMILHH 315 Query: 298 YPSVCMGKPFIPWTEKIEW---NKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLR 354 +P V G F P + I W + AW+ TG+P+IDAAM Q+ G+MHNRLR Sbjct: 316 HPRVAAGAAFHPAYDAIRWQDGDTGERYFHAWRDAATGYPLIDAAMLQIRQSGYMHNRLR 375 Query: 355 MITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQ 414 M+TASFLVKDL VDWR GE+YF QL D DLA+NNGGWQWAASTG D+ P+FRIFNP Q Sbjct: 376 MVTASFLVKDLGVDWRRGEQYFADQLNDFDLAANNGGWQWAASTGCDAQPWFRIFNPVTQ 435 Query: 415 GKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDK------NDLSLNYPLPIVDHKKACH 468 ++FDPQG FIR +LP+L +P +Y+HAP + + L NYP P+V H A Sbjct: 436 SQKFDPQGRFIRKYLPQLAALPDKYLHAPWTAPEAVLAEAGVRLGDNYPRPLVQHDVARQ 495 Query: 469 HTLNQYYAAKK 479 TL +Y A K+ Sbjct: 496 QTLRRYEAVKQ 506 >gi|327272396|ref|XP_003220971.1| PREDICTED: cryptochrome-1-like isoform 2 [Anolis carolinensis] Length = 589 Score = 377 bits (969), Expect = e-102, Method: Composition-based stats. Identities = 123/498 (24%), Positives = 198/498 (39%), Gaps = 32/498 (6%) Query: 7 MSVH-LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASL 65 M V+ + W R LR+ DN AL +D V V+I P + + F+ L Sbjct: 1 MGVNAVHWFRKGLRLHDNPALREVIQGADT-VRCVYILDPWFAGSSNVGINRWRFLLQCL 59 Query: 66 LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125 + +L + + + + +TKL E RD ++K Sbjct: 60 EDLDANLRKLNSRLFVIRG----QPADVFPRLFKEWNITKLSIEYDSEPFGKERDAAIKK 115 Query: 126 RLQHRVICKSFD-DSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL 184 + L I+ + + LI + ++ + A + Sbjct: 116 LASEAGVEVIVRISHTLYELDKIIELNGGQPPLTYKRFQTLISRMEPLEIPVETITAEVM 175 Query: 185 TGPVTPSNIPRFFDYPFQAIDPM-----------FPIGEQNALHILRKFCKEKVYYYVEQ 233 + TP + Y +++ + +P GE AL L + + K + + Sbjct: 176 SKCTTPVSDDHDEKYGVPSLEELGFDTDGLPSAVWPGGETEALTRLERHLERKAWVANFE 235 Query: 234 RDIPAIQGT----SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWRE 289 R + LSPYL G LS R + +L + + + K S S +L+WRE Sbjct: 236 RPRMNANSLLASPTGLSPYLRFGCLSCRLFYFKLTDLYKKVK-KNSSPPLSLYGQLLWRE 294 Query: 290 FYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWM 349 F+ P + P +I W+++ L W +G TGFP IDA M QL GW+ Sbjct: 295 FFYTAATNNPRFDKMEG-NPICVQIPWDRNPEALAKWAEGRTGFPWIDAIMTQLRQEGWI 353 Query: 350 HNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRI 408 H+ R A FL + DL + W G + F LLD D + N G W W S + +F Sbjct: 354 HHLARHAVACFLTRGDLWISWEEGMKVFEELLLDADWSVNAGSWMW-LSCSSFFQQFFHC 412 Query: 409 FNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLD------KNDLSLNYPLPIVD 462 + P G+R DP G +IR +LP L P +YI+ P + D K + +NYP P+V+ Sbjct: 413 YCPVGFGRRTDPNGDYIRRYLPVLRGFPAKYIYDPWNAPDGVQKAAKCIIGVNYPKPMVN 472 Query: 463 HKKACHHTLNQYYAAKKQ 480 H +A + + +Q Sbjct: 473 HAEASRLNIERMKQMYQQ 490 >gi|229549977|ref|ZP_04438702.1| deoxyribodipyrimidine photolyase [Enterococcus faecalis ATCC 29200] gi|312951532|ref|ZP_07770428.1| FAD binding domain of DNA photolyase [Enterococcus faecalis TX0102] gi|229304890|gb|EEN70886.1| deoxyribodipyrimidine photolyase [Enterococcus faecalis ATCC 29200] gi|310630498|gb|EFQ13781.1| FAD binding domain of DNA photolyase [Enterococcus faecalis TX0102] gi|315152445|gb|EFT96461.1| FAD binding domain of DNA photolyase [Enterococcus faecalis TX0031] gi|315158111|gb|EFU02128.1| FAD binding domain of DNA photolyase [Enterococcus faecalis TX0312] gi|327535168|gb|AEA94002.1| deoxyribodipyrimidine photolyase [Enterococcus faecalis OG1RF] Length = 477 Score = 377 bits (969), Expect = e-102, Method: Composition-based stats. Identities = 167/478 (34%), Positives = 242/478 (50%), Gaps = 24/478 (5%) Query: 11 LVWLRNDLRITDNKALYAACHNSDA-KVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69 ++W R DLR+ DNKAL A NS A ++I +F P+Q+ Q SA + F +ASL + Sbjct: 4 VMWFRRDLRLQDNKALAHALQNSAADELILLFQMNPQQFIQE--SANHNAF-FASLASFK 60 Query: 70 KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQ-RVTKLFYNRQYEINEVRRDKLLEKRLQ 128 + + Q + H + ++ + +++N +RD+ + + Sbjct: 61 ERIDQ-----EAHLQIMVGEPLDLFSRLKRKLPDWQAIYFNEDTCGFGAKRDQQAMRFFE 115 Query: 129 HRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187 I SF D+ L I + Y+V+TP+ + + + + Sbjct: 116 ENNIQSFSFQDAYLHGSEEIKKNDGSKYQVFTPYYNKWKEAPKETPIPVSYTAEKIFSAC 175 Query: 188 VTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSP 247 + P + + + + +GE+ A L F +K+ Y +RD P TS LS Sbjct: 176 LFPEEEAAYREQIARIPLTHYSVGEETARRRLNTFIDQKLQSYENKRDFPYQDQTSHLST 235 Query: 248 YLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPF 307 +L G LS R W L + ++ EL WR+FY + + +P + Sbjct: 236 FLRTGELSIRTIWQEL------ASMPSSLSKETFKKELAWRDFYNMIYSTFPQQ-KEEAI 288 Query: 308 IPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLV 367 I+W D + W++G TG+PIIDAAMRQLN GWMHNRLRMITASFLVK+L + Sbjct: 289 QEKFRYIQWTNDPEMFAKWQKGETGYPIIDAAMRQLNQTGWMHNRLRMITASFLVKNLHI 348 Query: 368 DWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRH 427 DWR GE+YF L+D D A+N GGWQWAASTG D+VPYFRIFNP IQ K+FD G FI+ Sbjct: 349 DWRWGEKYFQKMLIDYDAANNIGGWQWAASTGTDAVPYFRIFNPIIQSKKFDNDGQFIKK 408 Query: 428 WLPELNNVPTQYIHAPHSWLDKND------LSLNYPLPIVDHKKACHHTLNQYYAAKK 479 ++PEL VP +YIH P+ + L NYP PIVD+ + TL Y A+K+ Sbjct: 409 YVPELKQVPQKYIHQPNLMNEALQTQYHVHLGENYPKPIVDYASSKKQTLFLYEASKE 466 >gi|189202516|ref|XP_001937594.1| deoxyribodipyrimidine photo-lyase [Pyrenophora tritici-repentis Pt-1C-BFP] gi|187984693|gb|EDU50181.1| deoxyribodipyrimidine photo-lyase [Pyrenophora tritici-repentis Pt-1C-BFP] Length = 534 Score = 377 bits (969), Expect = e-102, Method: Composition-based stats. Identities = 146/494 (29%), Positives = 236/494 (47%), Gaps = 35/494 (7%) Query: 12 VWLR-NDLRITDNKALYAA---CHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67 W DLRI DN AL+ A ++ ++ +++ P HG SA + F+ L Sbjct: 50 HWFHPKDLRIQDNTALHHASELAQSAKKPLVCIYVDCPADESWHGTSAARVDFMCEGLKI 109 Query: 68 VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127 +QK L I + QC + +E + +Q+V+ +F N +YEI+E+RRD L K + Sbjct: 110 MQKELKDLNIPLVFLQCEDRKKIVETAVEWVKKQQVSHVFGNYEYEIDEMRRDLKLVKTV 169 Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQAD------LRSLPVPA 181 ++ + D ++ PG++L K++TP+ KA + L L P+ Sbjct: 170 GDKIQVSLYHDQTVVEPGTMLTGTGTPMKIFTPYHKAWLAKLRSEPELLDNNLPPAANPS 229 Query: 182 I---------RLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVE 232 P S+ D + I ++P G A + F K+ + +Y Sbjct: 230 SMKKDLKDLFDTPAPKPASDKQFASDEEKKRIRKLWPAGHSAASARMDSFLKQ-ISHYAA 288 Query: 233 QRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVD----LLIKPKSGAFSWLNELIWR 288 R PA TS++S Y S G++S R ++ + K +G + W+ E+++R Sbjct: 289 TRSNPAANSTSRMSAYFSAGMISMRSTLQKVVDYNRGSTDFTEAKASTGVYGWVREIVFR 348 Query: 289 EFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGW 348 E YR P M P + ++W D + W +G TG P IDA MRQLN + Sbjct: 349 ELYRQTTMTTPHTSMNLPQNLKFDAVQWEDDEEGWEKWYKGQTGEPFIDAGMRQLNAEAY 408 Query: 349 MHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRI 408 MHNRLRM +S+L +LL+D+R GE YF L+D DL++N GW+ P + + Sbjct: 409 MHNRLRMNVSSYLYCNLLLDYRRGERYFAETLIDWDLSNNTQGWE----------PSYTV 458 Query: 409 FNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLS-LNYPLPIVDHKKAC 467 FNP Q ++ DP G +IR W+PEL +V + + AP++ L K + L YP P VD K+ Sbjct: 459 FNPVSQAEKNDPDGEYIRKWVPELKHVKGKAVFAPYARLSKEEFEKLGYPKPHVDWKETK 518 Query: 468 HHTLNQYYAAKKQS 481 ++++ + + Sbjct: 519 ARAIDRFKRGLRSA 532 >gi|29376159|ref|NP_815313.1| deoxyribodipyrimidine photolyase [Enterococcus faecalis V583] gi|227518787|ref|ZP_03948836.1| deoxyribodipyrimidine photolyase [Enterococcus faecalis TX0104] gi|29343622|gb|AAO81383.1| deoxyribodipyrimidine photolyase [Enterococcus faecalis V583] gi|227073782|gb|EEI11745.1| deoxyribodipyrimidine photolyase [Enterococcus faecalis TX0104] gi|315575832|gb|EFU88023.1| FAD binding domain of DNA photolyase [Enterococcus faecalis TX0309B] gi|315580484|gb|EFU92675.1| FAD binding domain of DNA photolyase [Enterococcus faecalis TX0309A] Length = 477 Score = 377 bits (969), Expect = e-102, Method: Composition-based stats. Identities = 167/478 (34%), Positives = 242/478 (50%), Gaps = 24/478 (5%) Query: 11 LVWLRNDLRITDNKALYAACHNSDA-KVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69 ++W R DLR+ DNKAL A NS A ++I +F P+Q+ Q SA + F +ASL + Sbjct: 4 VIWFRRDLRLQDNKALAHALQNSAADELILLFQMNPQQFIQE--SANHNAF-FASLASFK 60 Query: 70 KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQ-RVTKLFYNRQYEINEVRRDKLLEKRLQ 128 + + Q + H + ++ + +++N +RD+ + + Sbjct: 61 ERIDQ-----EAHLQIMVGEPLDLFSRLKRKLPDWQAIYFNEDTCGFGAKRDQQAMRFFE 115 Query: 129 HRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187 I SF D+ L I + Y+V+TP+ + + + + Sbjct: 116 ENNIQSFSFQDAYLHGSEEIKKNDGSKYQVFTPYYNKWKEAPKETPIPVSYTAEKIFSAC 175 Query: 188 VTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSP 247 + P + + + + +GE+ A L F +K+ Y +RD P TS LS Sbjct: 176 LFPEEEAAYREQIARIPLTHYSVGEETARRRLNTFIDQKLQSYENKRDFPYQDQTSHLST 235 Query: 248 YLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPF 307 +L G LS R W L + ++ EL WR+FY + + +P + Sbjct: 236 FLRTGELSIRTIWQEL------ASVPSSLSKETFKKELAWRDFYNMIYSAFPQQ-KEEAI 288 Query: 308 IPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLV 367 I+W D + W++G TG+PIIDAAMRQLN GWMHNRLRMITASFLVK+L + Sbjct: 289 QEKFRYIQWTNDPEMFVKWQKGETGYPIIDAAMRQLNQTGWMHNRLRMITASFLVKNLHI 348 Query: 368 DWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRH 427 DWR GE+YF L+D D A+N GGWQWAASTG D+VPYFRIFNP IQ K+FD G FI+ Sbjct: 349 DWRWGEKYFQKMLIDYDAANNIGGWQWAASTGTDAVPYFRIFNPIIQSKKFDNDGQFIKK 408 Query: 428 WLPELNNVPTQYIHAPHSWLDKND------LSLNYPLPIVDHKKACHHTLNQYYAAKK 479 ++PEL VP +YIH P+ + L NYP PIVD+ + TL Y A+K+ Sbjct: 409 YVPELKQVPQKYIHQPNLMNEALQTQYHVHLGENYPKPIVDYASSKKQTLFLYEASKE 466 >gi|196231423|ref|ZP_03130282.1| Deoxyribodipyrimidine photo-lyase [Chthoniobacter flavus Ellin428] gi|196224759|gb|EDY19270.1| Deoxyribodipyrimidine photo-lyase [Chthoniobacter flavus Ellin428] Length = 468 Score = 377 bits (969), Expect = e-102, Method: Composition-based stats. Identities = 160/477 (33%), Positives = 235/477 (49%), Gaps = 19/477 (3%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 MS + W R DLRITDN AL AA D +V+ V+I + + A + F+ L Sbjct: 1 MSTAIHWFRRDLRITDNTALAAAAAAHD-QVVPVYIVSEWKAEHRWCGAPRQAFLCGCLD 59 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 + ++L KG Q + L Q +++NR + ++ L K Sbjct: 60 SLARNLEAKGGRLIIRQG----RADAVLKKLVQQTEAEAIYFNRDPDPFGRAMEERLTKI 115 Query: 127 LQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185 + I + D L +L +KV+TP+ KA ++ R++ + Sbjct: 116 ARDLGIRLHPYKDIALHERNEVLTGGGSPFKVFTPYAKAWLKLDKPEPTRAI--SKLSTP 173 Query: 186 GPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245 + +P + + GE A L F +++Y +RD+PA +GTS+L Sbjct: 174 PHIASDPLPTLHTWKLVGEAAILEPGEAAARKRLGCFLDGPIFHYQTRRDLPAEEGTSRL 233 Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305 S L G LS R+ + + + ++NELIWREFY ++ +P V + Sbjct: 234 SQDLRHGTLSIREVYAKCARAAEKAPAAHQRNIGIFINELIWREFYLQVLWHWPQVLDHE 293 Query: 306 PFIPWTEKIEWNKDS--------HLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMIT 357 F +++W Q W +G TGFPI+DA MRQL G+MHNR+RMI Sbjct: 294 -FQEDCRRLKWRDYWRPEKKDGGQDYQRWCRGETGFPIVDAGMRQLAATGFMHNRVRMIV 352 Query: 358 ASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKR 417 A FL KDL V W GE +FM L+DG++ASNNGGWQW+ASTG D+ PYFRI NP Q KR Sbjct: 353 AMFLTKDLHVWWMHGESWFMRHLVDGEIASNNGGWQWSASTGTDAAPYFRIQNPWSQSKR 412 Query: 418 FDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQY 474 FDP+G +I+ W+PEL +VP + AP + L+ +YPLP+VDH + L + Sbjct: 413 FDPEGAYIKRWVPELRDVPAGQLCAPPK--EGEALARDYPLPMVDHARERDVALEMF 467 >gi|257416128|ref|ZP_05593122.1| deoxyribodipyrimidine photolyase [Enterococcus faecalis AR01/DG] gi|257157956|gb|EEU87916.1| deoxyribodipyrimidine photolyase [Enterococcus faecalis ARO1/DG] Length = 477 Score = 377 bits (969), Expect = e-102, Method: Composition-based stats. Identities = 167/478 (34%), Positives = 241/478 (50%), Gaps = 24/478 (5%) Query: 11 LVWLRNDLRITDNKALYAACHNSDA-KVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69 ++W R DLR+ DNKAL A NS A ++I +F P+Q+ Q SA + F +ASL + Sbjct: 4 VMWFRRDLRLQDNKALAHALQNSAADELILLFQMNPQQFIQE--SANHNAF-FASLASFK 60 Query: 70 KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQ-RVTKLFYNRQYEINEVRRDKLLEKRLQ 128 + + Q + H + ++ + +++N +RD+ + + Sbjct: 61 ERIDQ-----EAHLQIMVGEPLDLFLRLKRKLPDWQAIYFNEDTCGFGAKRDQQAMRFFE 115 Query: 129 HRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187 I SF D+ L I + Y+V+TP+ + + + + Sbjct: 116 ENNIQSFSFQDAYLHGSEEIKKNDGNKYQVFTPYYNKWKEAPKETPIPVSYTAEKIFSAC 175 Query: 188 VTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSP 247 + P + + + + +GE+ A L F +K+ Y +RD P TS LS Sbjct: 176 LFPEEEAAYGEQIARIPLTHYSVGEKTARRCLNTFIDQKLRSYENKRDFPYQDQTSHLST 235 Query: 248 YLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPF 307 +L G LS R W L ++ EL WR+FY + + +P + Sbjct: 236 FLRTGELSIRTIWQEL------ASAPSSLSKETFKKELAWRDFYNMIYSTFPQQ-KEEAI 288 Query: 308 IPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLV 367 I+W D + W++G TG+PIIDAAMRQLN GWMHNRLRMITASFLVK+L + Sbjct: 289 QEKFRYIQWTNDPEMFVKWQKGETGYPIIDAAMRQLNQTGWMHNRLRMITASFLVKNLHI 348 Query: 368 DWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRH 427 DWR GE+YF L+D D A+N GGWQWAASTG D+VPYFRIFNP IQ K+FD G FI+ Sbjct: 349 DWRWGEKYFQKMLIDYDAANNIGGWQWAASTGTDAVPYFRIFNPIIQSKKFDNDGQFIKK 408 Query: 428 WLPELNNVPTQYIHAPHSWLDKND------LSLNYPLPIVDHKKACHHTLNQYYAAKK 479 ++PEL VP +YIH P+ + L NYP PIVD+ + TL Y A+K+ Sbjct: 409 YVPELKQVPQKYIHQPNLMNEALQTQYHVHLGENYPKPIVDYASSKKQTLFLYEASKE 466 >gi|241764783|ref|ZP_04762791.1| Deoxyribodipyrimidine photo-lyase [Acidovorax delafieldii 2AN] gi|241365713|gb|EER60409.1| Deoxyribodipyrimidine photo-lyase [Acidovorax delafieldii 2AN] Length = 488 Score = 377 bits (969), Expect = e-102, Method: Composition-based stats. Identities = 174/495 (35%), Positives = 244/495 (49%), Gaps = 26/495 (5%) Query: 1 MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHF 60 M++T A LVW R DLR D+ ALY A KV VF+ + R+ F Sbjct: 1 MESTYA--TGLVWFRRDLRACDHAALYHALTQC-RKVHCVFVFDRAILDALPRADRRVAF 57 Query: 61 IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120 I +L+++ +L + + + + ++ N E + RD Sbjct: 58 IREALVELDAALRTLASHPAGGLIVRHALATDAVPELAQALQAQAVYANHDDEPQALSRD 117 Query: 121 KLLEKRLQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPV 179 L+ RL I +F D LL +L A Y V+TP++ A ++ + L+S V Sbjct: 118 SLVRTRLAQTGIAFHTFKDHTLLERDEVLTQAGTPYSVFTPYKNAWLRTIDAFQLQSYAV 177 Query: 180 --PAIRLTGPVTPSNIP--RFFDYPFQA---IDPMFPIGEQNALHILRKFCKEKVYYYVE 232 A RL P +P F+A P G A+ + F + +++ Y + Sbjct: 178 VRHAHRLAPRPAPECLPVPALGALGFEAAQNTPLGLPTGSSGAMRLFEDFLQ-RIHRYAD 236 Query: 233 QRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYR 292 RD PAI+G S LS +L G +SPR L GA +WLNELIWR+FY Sbjct: 237 TRDYPAIKGPSYLSVHLRFGTISPRLLARSAHA----LAQGGNPGATTWLNELIWRDFYC 292 Query: 293 HLMAFYPSVCMGKPFIPWTEKIEWNKDSH---LLQAWKQGYTGFPIIDAAMRQLNTIGWM 349 ++A +P V + + F P + I+W L AW +G TG+P++DAAM QLN G+M Sbjct: 293 QILAHHPHV-VERSFKPAYDAIQWETGDEAQALFSAWCEGRTGYPLVDAAMAQLNQTGYM 351 Query: 350 HNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIF 409 HNRLRM+ ASFLVK L +DWR GE YF + L D DLA+NNGGWQWA+S+G D+ PYFRIF Sbjct: 352 HNRLRMVAASFLVKHLGIDWRWGEHYFATHLNDFDLAANNGGWQWASSSGCDAQPYFRIF 411 Query: 410 NPTIQGKRFDPQGTFIRHW-----LPELNNVPTQYIHAPHSWLDKN-DLSLNYPLPIVDH 463 NP Q ++FD +G FIR + L + + P + L +YP PIVDH Sbjct: 412 NPVSQSEKFDAEGRFIRRYLPQLAALPLAALHAPWRARPLELQEAGVVLGHHYPQPIVDH 471 Query: 464 KKACHHTLNQYYAAK 478 A TL +Y K Sbjct: 472 DSARQRTLQRYAVVK 486 >gi|257085148|ref|ZP_05579509.1| deoxyribodipyrimidine photolyase [Enterococcus faecalis Fly1] gi|256993178|gb|EEU80480.1| deoxyribodipyrimidine photolyase [Enterococcus faecalis Fly1] Length = 477 Score = 377 bits (969), Expect = e-102, Method: Composition-based stats. Identities = 167/478 (34%), Positives = 241/478 (50%), Gaps = 24/478 (5%) Query: 11 LVWLRNDLRITDNKALYAACHNSDA-KVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69 ++W R DLR+ DNKAL A NS A ++I +F P+Q+ Q SA + F +ASL + Sbjct: 4 VMWFRRDLRLQDNKALAHALQNSAADELILLFQMNPQQFIQE--SANHNAF-FASLASFK 60 Query: 70 KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQ-RVTKLFYNRQYEINEVRRDKLLEKRLQ 128 + + Q + H + ++ + +++N +RD+ + + Sbjct: 61 ERIDQ-----EAHLQIMVGEPLDLFSRLKRKLPDWQAIYFNEDTCGFGAKRDQQAMRFFE 115 Query: 129 HRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187 I SF D+ L I + Y+V+TP+ + + + + Sbjct: 116 ENNIQSFSFQDAYLHGSEEIKKNDGSKYQVFTPYYNKWKEAPKETPIPVSYTAEKIFSAC 175 Query: 188 VTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSP 247 + P + + + + +GE+ A L F +K+ Y +RD P TS LS Sbjct: 176 LFPEEEAAYGEQIARIPLTHYSVGEETARRRLNTFIDQKLQSYENKRDFPYQDQTSHLST 235 Query: 248 YLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPF 307 +L G LS R W L ++ EL WR+FY + + +P + Sbjct: 236 FLRTGELSIRTIWQEL------ASAPSSLSKETFKKELAWRDFYNMIYSAFPQQ-KEEAI 288 Query: 308 IPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLV 367 I+W D + W++G TG+PIIDAAMRQLN GWMHNRLRMITASFLVK+L + Sbjct: 289 QEKFRYIQWTNDPEMFAKWQKGETGYPIIDAAMRQLNQTGWMHNRLRMITASFLVKNLHI 348 Query: 368 DWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRH 427 DWR GE+YF L+D D A+N GGWQWAASTG D+VPYFRIFNP IQ K+FD G FI+ Sbjct: 349 DWRWGEKYFQKMLIDYDAANNIGGWQWAASTGTDAVPYFRIFNPIIQSKKFDNDGQFIKK 408 Query: 428 WLPELNNVPTQYIHAPHSWLDKND------LSLNYPLPIVDHKKACHHTLNQYYAAKK 479 ++PEL VP +YIH P+ + L NYP PIVD+ + TL Y A+K+ Sbjct: 409 YVPELKQVPQKYIHQPNLMNEALQTQYHVHLGENYPKPIVDYASSKKQTLFLYEASKE 466 >gi|301167819|emb|CBW27403.1| putative deoxyribodipyrimidine photolyase [Bacteriovorax marinus SJ] Length = 434 Score = 377 bits (969), Expect = e-102, Method: Composition-based stats. Identities = 166/473 (35%), Positives = 228/473 (48%), Gaps = 46/473 (9%) Query: 8 SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67 V + W R DLR+ DN LY A NS V+ +FI + + FI+ L Sbjct: 7 KVSIFWFRRDLRVEDNIGLYHAL-NSSFPVLPIFIFDKNILNKLERDDSRVSFIHECLQN 65 Query: 68 VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127 + + + S + E +S+ V +++ N YE + RDK +E L Sbjct: 66 LSEKFRKYDGDLLTFYNSPKNAWKEIFESF----DVQEVYTNEDYEPYALSRDKSIEDYL 121 Query: 128 -QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 + + +S+ D + IL Y VYTP++ ++ L +DL S+ Sbjct: 122 TRKGIKFQSYKDQCIFSKFDILKKDGTPYTVYTPYKNKWLETLQPSDLASIKSEKNLSKI 181 Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246 S I F FP R K+ + Y E RD+P+I GTS L Sbjct: 182 YKFKSEIHSLMSLGFTKSHISFPK---------RIIKKKIITNYHETRDLPSINGTSLLG 232 Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP 306 +L G + PR+ + +WLNELIWREF+ ++ +P V + P Sbjct: 233 VHLRFGTIGPRKLASIAYHTNK-----------TWLNELIWREFFSQILFHFPHV-VNAP 280 Query: 307 FIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLL 366 F E IEW + + W +G TGFP++DA MR+LN G MHNR+RM+ ASFLVKDLL Sbjct: 281 FREKYESIEWRNNKEEFKLWCEGRTGFPLVDAGMRELNQTGHMHNRVRMLVASFLVKDLL 340 Query: 367 VDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIR 426 +DWR GE+YF +LLD DLASNNG WQWAA TG D+ PYFRIFNPT Q K+FDP +++ Sbjct: 341 IDWRWGEKYFAKKLLDFDLASNNGNWQWAAGTGCDAAPYFRIFNPTTQIKKFDPDLIYVK 400 Query: 427 HWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479 W+PE S NY IVDHK+A H + Y A K Sbjct: 401 KWVPEYG-------------------SDNYTEEIVDHKEAYHRAIFTYNKALK 434 >gi|330752085|emb|CBL80595.1| deoxyribodipyrimidine photolyase [uncultured Leeuwenhoekiella sp.] Length = 434 Score = 377 bits (969), Expect = e-102, Method: Composition-based stats. Identities = 143/474 (30%), Positives = 219/474 (46%), Gaps = 48/474 (10%) Query: 8 SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67 SV + W R DLR+ DN A SD V+ +FI E + + FIY +L + Sbjct: 3 SVSIFWFRRDLRLDDNVGFLEALK-SDYPVLPIFIFDKEILDKLPKDDARVTFIYETLQK 61 Query: 68 VQKSLS-QKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 ++ L + I+ V +++ NR YE RRD+ + Sbjct: 62 MRDRLQNDHTSSL----ALFYGKPIDIWKQILKDYEVKEVYTNRDYEPYAKRRDEEISSL 117 Query: 127 LQHR-VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185 + + + K+F D V+ ++ + Y VYTP++ ++ + + + + L Sbjct: 118 FEEKDIDFKTFKDQVIFEKDDVVKGDGEPYIVYTPYKNKWLETFNEDNDLKIHYTSQHLN 177 Query: 186 GPVTPSNIP--RFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS 243 V S +P + F+ P + Y + R+ PA GTS Sbjct: 178 NLVENSRLPNLTLSEMGFKTSSLKVPD---------YDVTPTLIDNYEDTRNFPAQDGTS 228 Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCM 303 +L P+L G +S R+ + E + + +EL+WREF+ ++ YP Sbjct: 229 RLGPHLRFGTVSVRKMVKKALAENNQV----------FWSELVWREFFMQILYHYPETI- 277 Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363 F ++I+W + + WK G TGF ++DA MR+LNT G+MHNR+RM+TASFL K Sbjct: 278 NNAFRKKYDRIDWRNNEEEFEKWKTGTTGFLLVDAGMRELNTTGYMHNRVRMLTASFLCK 337 Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423 LL+DWR GE YF +LLD + ASN G WQWAA +G D+ PYFRIFNP Q +FD + Sbjct: 338 HLLIDWRWGETYFAEKLLDYEQASNVGNWQWAAGSGVDAAPYFRIFNPMTQVDKFDKERK 397 Query: 424 FIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477 +I ++PE + + YP +VDHK+A L Y A Sbjct: 398 YIEKFIPEYD-------------------TSEYPEKMVDHKEARERCLKTYKQA 432 >gi|260765933|gb|ACX49997.1| cryptochrome 1 [Capsella bursa-pastoris] Length = 674 Score = 377 bits (969), Expect = e-102, Method: Composition-based stats. Identities = 139/490 (28%), Positives = 227/490 (46%), Gaps = 25/490 (5%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 +VW R DLR+ DN AL AA VIAVF+ PE+ + ++ SL Q+ Sbjct: 18 IVWFRRDLRVEDNPALAAAVRAG--PVIAVFVWAPEEEGHYHPGRVSRWWLKNSLAQLDS 75 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL-QH 129 SL G + + DS+ L +++F+N Y+ + RD + L Sbjct: 76 SLRSLGTCLITKRST---DSVTSLLEVVKSTGASQIFFNHLYDPLSLVRDHRAKXVLTAQ 132 Query: 130 RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189 + +SF+ +L P + + + + ++ F + + + LP I Sbjct: 133 GIAVRSFNADLLYEPWEVTDELGRPFSMFGAFWERCLSMPYDPESPLLPPKKIISGDVSK 192 Query: 190 PSNIPRFFDYPFQA-----IDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244 + P F+ + + + G NA L F + Y + R TS Sbjct: 193 CVSDPLVFEDDSEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSATTSF 252 Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFS----WLNELIWREFYRHLMAFYPS 300 LSP+L G +S R+ ++ ++ + V + +L + RE+ R++ +P Sbjct: 253 LSPHLHFGEVSVRKVFHLVRIKQVAWANEGNEAGEESVNLFLKSIGLREYSRYISFNHP- 311 Query: 301 VCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASF 360 +P + + W D + +AW+QG TG+P++DA MR+L GW+H+R+R++ +SF Sbjct: 312 YSHERPLLGHLKFFPWAVDENYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSF 371 Query: 361 LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDP 420 VK L + WR G +YF LLD DL S+ GWQ+ T DS + RI NP +G +FDP Sbjct: 372 FVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYITGTLPDSREFDRIDNPQFEGYKFDP 431 Query: 421 QGTFIRHWLPELNNVPTQYIHAPHSWLDKN------DLSLNYPLPIVDHKKACHH---TL 471 G ++R WLPEL+ +PT +IH P + + +L NYP PIV +A L Sbjct: 432 NGEYVRRWLPELSRLPTDWIHHPWNAPESVLQAAGIELGSNYPRPIVGLDEAKARLHEAL 491 Query: 472 NQYYAAKKQS 481 +Q + + S Sbjct: 492 SQMWQLEAAS 501 >gi|325923198|ref|ZP_08184882.1| deoxyribodipyrimidine photo-lyase type I [Xanthomonas gardneri ATCC 19865] gi|325546322|gb|EGD17492.1| deoxyribodipyrimidine photo-lyase type I [Xanthomonas gardneri ATCC 19865] Length = 472 Score = 377 bits (968), Expect = e-102, Method: Composition-based stats. Identities = 156/480 (32%), Positives = 229/480 (47%), Gaps = 17/480 (3%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 MS +VW R DLR+ DN AL AA A I ++I P + + A + + SL Sbjct: 1 MSYAIVWFRRDLRLQDNPALRAALDAGHAP-IPLYIDAPHEEGEWAPGAASRSWRHRSLA 59 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 + +L G DS + LD Q +++NR+YE RD +++ Sbjct: 60 ALDAALRALGSGLVIR----AGDSAQVLDEMIEQTGAVAVYWNRKYEPATQPRDAQIKRS 115 Query: 127 LQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185 L+ R I +S + ++L+ P + YKV+TP+ + + L + P L Sbjct: 116 LRERGIEVQSCNAALLMEPWQLSTQQGGPYKVFTPYWRNALTQLQLPAAVAAPRSLPALP 175 Query: 186 GPVTPSNIPRFFDYPFQAIDP----MFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQG 241 + + + P D + GE A +L F + Y E RD P G Sbjct: 176 ATLKSAALETLGLVPKLDWDQGFWEHWQPGEAGAHEMLEIFIDGALSGYRENRDRPDRVG 235 Query: 242 TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSV 301 TSQLSP+L G ++P + + L+ + + + ++ +L WR+F HL+ +P Sbjct: 236 TSQLSPHLHFGEIAPWRIASTLE---ANRNARNSAEIDGYIRQLGWRDFAYHLLHHFPD- 291 Query: 302 CMGKPFIPWTEKIEWNK-DSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASF 360 + P E +W K D LQAW++G TG PI+DA MRQL GWMHNR+RMI AS Sbjct: 292 TTNQNLNPRFEGFDWAKVDPVALQAWQRGRTGIPIVDAGMRQLWHTGWMHNRVRMIVASL 351 Query: 361 LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDP 420 L K L + W G +F L+D DLA+N GWQW A TG D+ PYFR+FNP Q ++FDP Sbjct: 352 LCKHLRIHWIEGARWFWETLVDADLANNTLGWQWVAGTGADAAPYFRVFNPVTQAEKFDP 411 Query: 421 QGTFIRHWLPELNNVPTQYIHAPH-SWLDKNDLSLNYPL-PIVDHKKACHHTLNQYYAAK 478 Q +I W+PEL + + AP S L + YP PI+ + L Y + Sbjct: 412 QAAYITRWVPELGKLAVKERFAPWLSPLSLARFAPKYPRTPIIGLAEGRDAALAAYAKTR 471 >gi|323480758|gb|ADX80197.1| deoxyribodipyrimidine photo-lyase [Enterococcus faecalis 62] Length = 477 Score = 377 bits (968), Expect = e-102, Method: Composition-based stats. Identities = 166/478 (34%), Positives = 243/478 (50%), Gaps = 24/478 (5%) Query: 11 LVWLRNDLRITDNKALYAACHNSDA-KVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69 ++W R DLR+ DNKAL A NS A ++I +F P+Q+ Q SA + F +ASL ++ Sbjct: 4 VMWFRRDLRLQDNKALAHALQNSAADELILLFQMNPQQFIQE--SANHNAF-FASLASLK 60 Query: 70 KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQ-RVTKLFYNRQYEINEVRRDKLLEKRLQ 128 + + Q + H + ++ + +++N +RD+ + + Sbjct: 61 ERIDQ-----EAHLQIMVGEPLDLFSRLKRKLPDWQAIYFNEDTCGFGAKRDQQAMRFFE 115 Query: 129 HRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187 I SF D+ L I + Y+V+TP+ + + + + Sbjct: 116 ENNIQSFSFQDAYLHGSEEIKKNDGSKYQVFTPYYNKWKEAPKETPIPVSYTAEKIFSAC 175 Query: 188 VTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSP 247 + P + + + + +GE+ A L F +K+ Y +RD P TS LS Sbjct: 176 LFPEEEAAYREQIARIPLTHYSVGEETARRRLNTFIDQKLQSYENKRDFPYQDQTSHLST 235 Query: 248 YLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPF 307 +L G LS R W L + ++ EL WR+FY + + +P + Sbjct: 236 FLRTGELSIRTIWQEL------ASVPSSLSKETFKKELAWRDFYNMIYSAFPQQ-KEEAI 288 Query: 308 IPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLV 367 I+W D + W++G TG+PIIDAAMRQLN GWMHNRLRMITASFLVK+L + Sbjct: 289 QEKFRYIQWINDPEMFVKWQKGETGYPIIDAAMRQLNQTGWMHNRLRMITASFLVKNLHI 348 Query: 368 DWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRH 427 DWR GE+YF L+D D A+N GGWQWAASTG D+VPYFRIFNP IQ K+FD G FI+ Sbjct: 349 DWRWGEKYFQKMLIDYDAANNIGGWQWAASTGTDAVPYFRIFNPIIQSKKFDNDGQFIKK 408 Query: 428 WLPELNNVPTQYIHAPHSWLDKND------LSLNYPLPIVDHKKACHHTLNQYYAAKK 479 ++PEL VP +YIH P+ + L NYP PIV++ + TL Y A+K+ Sbjct: 409 YVPELKQVPQKYIHQPNLMNEALQTQYHVHLGENYPKPIVNYASSKKQTLFLYEASKE 466 >gi|148909202|gb|ABR17701.1| unknown [Picea sitchensis] Length = 655 Score = 377 bits (968), Expect = e-102, Method: Composition-based stats. Identities = 145/482 (30%), Positives = 223/482 (46%), Gaps = 26/482 (5%) Query: 7 MSVH--LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYAS 64 MS + +VW R DLR+ DN AL A VI ++I +PE+ Q+ ++ S Sbjct: 1 MSTNCSIVWFRRDLRVEDNPALAAGVRAG--AVIVLYIWSPEEEGQYYPGRVSRWWLKQS 58 Query: 65 LLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLE 124 L + SL G + +N SI + T+LFYN Y+ + RD L+ Sbjct: 59 LAHLDSSLRNLGARLITKRSTN---SISAILQVVQATGATQLFYNHLYDPLSLVRDHKLK 115 Query: 125 KRLQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIR 183 + L R I +SF+ +L P + + + + + + L L P Sbjct: 116 QDLSSRGILVRSFNSDLLYEPWEVNDEEGHAFSTFQDYWNKCLNMPYD-PLAPLLPPKRI 174 Query: 184 LTGPVT--PSNIPRFFDYPFQAIDPM----FPIGEQNALHILRKFCKEKVYYYVEQRDIP 237 + G V+ PS+ D +A + + + G +A L F + Y R Sbjct: 175 VAGEVSNCPSDDLNLEDESEKASNALLARAWSPGWSSADKALTAFINGPLLDYAINRQKA 234 Query: 238 AIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFS----WLNELIWREFYRH 293 TS LSP+L G LS ++ ++ L+ V + + +L + RE+ R+ Sbjct: 235 DSATTSLLSPHLHFGELSVKKVFHLLRIRQVLWANEGNTSGEQSVNLFLKSIGLREYSRY 294 Query: 294 LMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRL 353 L +PS KP + W DS ++W+QG TG+P++DA MR+L GW+H+R+ Sbjct: 295 LSFNFPS-SHEKPLLSHLNYFPWRVDSDYFKSWRQGRTGYPLVDAGMRELWATGWLHDRI 353 Query: 354 RMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTI 413 R++ +SF VK L + WR G +YF LLD DL + GWQ+ + D RI NP Sbjct: 354 RVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLECDALGWQYISGCLPDGREMDRIDNPQF 413 Query: 414 QGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDK------NDLSLNYPLPIVDHKKAC 467 +G +FDP G ++R WLPEL +PT++IH P +L NYPLPIV+ A Sbjct: 414 EGYKFDPAGEYVRRWLPELARLPTEWIHHPWDAPRAVLQAAGVELGSNYPLPIVEISTAK 473 Query: 468 HH 469 Sbjct: 474 ER 475 >gi|76802655|ref|YP_330750.1| deoxyribodipyrimidine photolyase [Natronomonas pharaonis DSM 2160] gi|76558520|emb|CAI50112.1| deoxyribodipyrimidine photolyase [Natronomonas pharaonis DSM 2160] Length = 462 Score = 377 bits (968), Expect = e-102, Method: Composition-based stats. Identities = 158/475 (33%), Positives = 234/475 (49%), Gaps = 21/475 (4%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 + + W R DLR+ DN+ L A + + +F+ + + F+ +L + Sbjct: 1 MRIHWHRRDLRVADNRGLADA----PGRPVGLFVFDEAVLD--HAAPPRVAFLLDALSSL 54 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128 + + +G + D L + V + +NR Y RD + L Sbjct: 55 RAAYRDRGSELFIRRG----DPANVLSALADDLGVDVVSWNRDYSGLAADRDDRVADVLD 110 Query: 129 HRVIC-KSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187 + + F D++ PPG+I +A Y VY+ F K P P L Sbjct: 111 EVGVTPQRFHDAICHPPGTITTNAGDPYSVYSYFWKKWRDREKDD-----PYPVPALADA 165 Query: 188 VTPSNIPRFFDYPFQAIDPMFP-IGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246 + +P D F P G A L F ++ +Y Y E RD PA + TS+LS Sbjct: 166 TDETTLPTLADLGFDEPTAELPKAGTAPARGRLAAFLEDDIYRYEEARDYPATECTSRLS 225 Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPK-SGAFSWLNELIWREFYRHLMAFYPSVCMGK 305 L G + R +++E + A + ++L WREFY H++AF P V + Sbjct: 226 ADLKFGTIGIRAVDKQVREAIAAAETDSERESAAEFRSQLAWREFYTHVLAFNPEVVT-E 284 Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365 + + I+W D LL AWK+G TG+PI+DA MRQL +MHNR+RMI ASFL KDL Sbjct: 285 NYKRYEHDIDWEDDPELLAAWKRGETGYPIVDAGMRQLQAEAYMHNRVRMIVASFLTKDL 344 Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425 L+DWR G +F +L+D D A++NGGWQWAASTG D+ PYFRIFNP QG+R+DP +I Sbjct: 345 LIDWRHGYAHFRDRLVDHDTANDNGGWQWAASTGTDAQPYFRIFNPMTQGERYDPDAEYI 404 Query: 426 RHWLPELNNVPTQYIHAPH--SWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478 R ++PEL+ V IH+ H S + + + YP P+VDH + L+ + A+ Sbjct: 405 REYVPELSGVEADVIHSWHELSPTQRANAAPEYPQPVVDHSQRREQALDMFEQAR 459 >gi|260062651|ref|YP_003195731.1| deoxyribodipyrimidine photolyase-class I [Robiginitalea biformata HTCC2501] gi|88784218|gb|EAR15388.1| deoxyribodipyrimidine photolyase-class I [Robiginitalea biformata HTCC2501] Length = 434 Score = 377 bits (968), Expect = e-102, Method: Composition-based stats. Identities = 151/476 (31%), Positives = 227/476 (47%), Gaps = 49/476 (10%) Query: 6 AMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASL 65 SV++ W R DLR+ DN+ L A + V+ +FI E + F++ L Sbjct: 2 GKSVNIFWFRRDLRLEDNRGLCEAL-GAGRPVLPIFIFDSEILDGLPADDPRVTFLHDRL 60 Query: 66 LQVQKSLSQ-KGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLE 124 +++ + + +G + +E V ++F NR YE RD+ + Sbjct: 61 QELRSRMQENQGSSLAIYHGKP----LEIFKELASDWDVGQVFTNRDYEPYARDRDEQVG 116 Query: 125 KRLQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIR 183 + L + I +F D V+ ++ Y VYTP+ K Q L + A + Sbjct: 117 QWLSEQGIEFHTFKDQVIFEKDEVVKDDGDPYVVYTPYMKKWKQVFRDTPLATF-DSAGQ 175 Query: 184 LTGPVTPSNIPR--FFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQG 241 L + S +P D+ F+ P + + + Y + R+ PA +G Sbjct: 176 LGNLIAHSRLPNPDLADFGFERSAIPVPDYDMGG---------KLIDAYEDNRNYPAREG 226 Query: 242 TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSV 301 TS+L P+L G +S RQ + E S ++ NELIWREF+ ++ +P Sbjct: 227 TSRLGPHLRFGTISIRQALGKALE----------SSNETFWNELIWREFFMQILWHFPR- 275 Query: 302 CMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFL 361 + + F ++I W D + W++G TGF ++DA MRQLN G+MHNR+RM+TASFL Sbjct: 276 TVHEAFRKEYDRIAWRNDESEFEKWREGRTGFALVDAGMRQLNASGYMHNRVRMLTASFL 335 Query: 362 VKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQ 421 K LL+DWR GE YF +LLD ++ASN G WQWAA +G D+ PYFRIFNP Q +FD Sbjct: 336 CKHLLIDWRWGEAYFAEKLLDYEMASNVGNWQWAAGSGVDAAPYFRIFNPMTQVDKFDKD 395 Query: 422 GTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477 ++IR W+PE + +YP +VDHK A L Y AA Sbjct: 396 KSYIREWIPEYG-------------------TEDYPEKMVDHKAARERCLKTYKAA 432 >gi|257086709|ref|ZP_05581070.1| deoxyribodipyrimidine photolyase [Enterococcus faecalis D6] gi|256994739|gb|EEU82041.1| deoxyribodipyrimidine photolyase [Enterococcus faecalis D6] gi|315027232|gb|EFT39164.1| FAD binding domain of DNA photolyase [Enterococcus faecalis TX2137] Length = 477 Score = 377 bits (968), Expect = e-102, Method: Composition-based stats. Identities = 167/478 (34%), Positives = 241/478 (50%), Gaps = 24/478 (5%) Query: 11 LVWLRNDLRITDNKALYAACHNSDA-KVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69 ++W R DLR+ DNKAL A NS A ++I +F P+Q+ Q SA + F +ASL + Sbjct: 4 VMWFRRDLRLQDNKALAHALQNSAADELILLFQMNPQQFIQE--SANHNAF-FASLASFK 60 Query: 70 KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQ-RVTKLFYNRQYEINEVRRDKLLEKRLQ 128 + + Q + H + ++ + +++N +RD+ + + Sbjct: 61 ERIDQ-----EAHLQIMVGEPLDLFSRLKRKLPDWQAIYFNEDTCGFGAKRDQQAMRFFE 115 Query: 129 HRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187 I SF D+ L I + Y+V+TP+ + + + + Sbjct: 116 ENNIQSFSFQDAYLHGSEEIKKNDGSKYQVFTPYYNKWKEAPKETPIPVSYTAEKIFSAC 175 Query: 188 VTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSP 247 + P + + + + +GE+ A L F +K+ Y +RD P TS LS Sbjct: 176 LFPEEEAAYREQIARIPLTHYSVGEETARRRLNTFINQKLRSYENKRDFPYQDQTSHLST 235 Query: 248 YLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPF 307 +L G LS R W L ++ EL WR+FY + + +P + Sbjct: 236 FLRTGELSIRTIWQEL------ASAPSSLSKETFKKELAWRDFYNMIYSTFPQQ-KEEAI 288 Query: 308 IPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLV 367 I+W D + W++G TG+PIIDAAMRQLN GWMHNRLRMITASFLVK+L + Sbjct: 289 QEKFRYIQWTNDPEMFAKWQKGETGYPIIDAAMRQLNQTGWMHNRLRMITASFLVKNLHI 348 Query: 368 DWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRH 427 DWR GE+YF L+D D A+N GGWQWAASTG D+VPYFRIFNP IQ K+FD G FI+ Sbjct: 349 DWRWGEKYFQKMLIDYDAANNIGGWQWAASTGTDAVPYFRIFNPIIQSKKFDNDGQFIKK 408 Query: 428 WLPELNNVPTQYIHAPHSWLDKND------LSLNYPLPIVDHKKACHHTLNQYYAAKK 479 ++PEL VP +YIH P+ + L NYP PIVD+ + TL Y A+K+ Sbjct: 409 YVPELKQVPQKYIHQPNLMNEALQTQYHVHLGENYPKPIVDYASSKKQTLFLYEASKE 466 >gi|256762534|ref|ZP_05503114.1| deoxyribodipyrimidine photolyase [Enterococcus faecalis T3] gi|256683785|gb|EEU23480.1| deoxyribodipyrimidine photolyase [Enterococcus faecalis T3] Length = 473 Score = 377 bits (968), Expect = e-102, Method: Composition-based stats. Identities = 167/477 (35%), Positives = 241/477 (50%), Gaps = 24/477 (5%) Query: 12 VWLRNDLRITDNKALYAACHNSDA-KVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 +W R DLR+ DNKAL A NS A ++I +F P+Q+ Q SA + F +ASL ++ Sbjct: 1 MWFRRDLRLQDNKALAHALQNSAADELILLFQMNPQQFIQE--SANHNAF-FASLASFKE 57 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQ-RVTKLFYNRQYEINEVRRDKLLEKRLQH 129 + Q + H + ++ + +++N +RD+ + + Sbjct: 58 RIDQ-----EAHLQIMVGEPLDLFSRLKRKLPDWQAIYFNEDTCGFGAKRDQQAMRFFEE 112 Query: 130 RVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188 I SF D+ L I + Y+V+TP+ + + + + + Sbjct: 113 NNIQSFSFQDAYLHGSEEIKKNDGSKYQVFTPYYNKWKEAPKETPIPVSYTAEKIFSACL 172 Query: 189 TPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPY 248 P + + + + +GE+ A L F +K+ Y +RD P TS LS + Sbjct: 173 FPEEEAAYREQIARIPLTHYSVGEETARRRLNTFIDQKLQSYENKRDFPYQDQTSHLSTF 232 Query: 249 LSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFI 308 L G LS R W L + ++ EL WR+FY + + +P + Sbjct: 233 LRTGELSIRTIWQEL------ASVPSSLSKETFKKELAWRDFYNMIYSAFPQQ-KEEAIQ 285 Query: 309 PWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVD 368 I+W D + W++G TG+PIIDAAMRQLN GWMHNRLRMITASFLVK+L +D Sbjct: 286 EKFRYIQWTNDPEMFVKWQKGETGYPIIDAAMRQLNQTGWMHNRLRMITASFLVKNLHID 345 Query: 369 WRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHW 428 WR GE+YF L+D D A+N GGWQWAASTG D+VPYFRIFNP IQ K+FD G FI+ + Sbjct: 346 WRWGEKYFQKMLIDYDAANNIGGWQWAASTGTDAVPYFRIFNPIIQSKKFDNDGQFIKKY 405 Query: 429 LPELNNVPTQYIHAPHSWLDKND------LSLNYPLPIVDHKKACHHTLNQYYAAKK 479 +PEL VP +YIH P+ + L NYP PIVD+ + TL Y A+K+ Sbjct: 406 VPELKQVPQKYIHQPNIMNEALQTQYHVHLGENYPKPIVDYASSKKQTLFLYEASKE 462 >gi|315150502|gb|EFT94518.1| FAD binding domain of DNA photolyase [Enterococcus faecalis TX0012] Length = 477 Score = 377 bits (967), Expect = e-102, Method: Composition-based stats. Identities = 166/478 (34%), Positives = 239/478 (50%), Gaps = 24/478 (5%) Query: 11 LVWLRNDLRITDNKALYAACHNSDA-KVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69 ++W R DLR+ DNKAL A NS A ++I +F P+Q+ Q SA + F +ASL + Sbjct: 4 VMWFRRDLRLQDNKALAHALQNSAADELILLFQMNPQQFIQE--SANHNAF-FASLASFK 60 Query: 70 KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQ-RVTKLFYNRQYEINEVRRDKLLEKRLQ 128 + + Q + H + ++ + +++N +RD+ + + Sbjct: 61 ERIDQ-----EAHLQIMVGEPLDLFSRLKRKLPDWQAIYFNEDTCGFGAKRDQQAMRFFE 115 Query: 129 HRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187 I SF D+ L I + Y+V+TP+ + + + + Sbjct: 116 ENNIQSFSFQDAYLHGSEEIKKNDGSKYQVFTPYYNKWKEAPKETPIPVSYTAEKIFSAC 175 Query: 188 VTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSP 247 + P + + + + +GE+ A L F +K+ Y RD P TS LS Sbjct: 176 LFPEEEAAYGEQIARIPLTHYSVGEETARRRLNTFIDQKLQSYENNRDFPYQDQTSHLST 235 Query: 248 YLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPF 307 +L G LS R L ++ EL WR+FY + + +P + Sbjct: 236 FLRTGELSIRTIRQEL------ASAPSSLSKETFKKELAWRDFYNMIYSAFPQQ-KEEAI 288 Query: 308 IPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLV 367 I+W D + W++G TG+PIIDAAMRQLN GWMHNRLRMITASFLVK+L + Sbjct: 289 QEKFRYIQWTNDPEMFAKWQKGETGYPIIDAAMRQLNQTGWMHNRLRMITASFLVKNLHI 348 Query: 368 DWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRH 427 DWR GE+YF L+D D A+N GGWQWAASTG D+VPYFRIFNP IQ K+FD G FI+ Sbjct: 349 DWRWGEKYFQKMLIDYDAANNIGGWQWAASTGTDAVPYFRIFNPIIQSKKFDNDGQFIKK 408 Query: 428 WLPELNNVPTQYIHAPHSWLDKND------LSLNYPLPIVDHKKACHHTLNQYYAAKK 479 ++PEL VP +YIH P+ + L NYP PIVD+ + TL Y A+K+ Sbjct: 409 YVPELKQVPQKYIHQPNLMNEALQTQYHVHLGENYPKPIVDYASSKKQTLFLYEASKE 466 >gi|117924446|ref|YP_865063.1| deoxyribodipyrimidine photo-lyase type I [Magnetococcus sp. MC-1] gi|117608202|gb|ABK43657.1| deoxyribodipyrimidine photo-lyase type I [Magnetococcus sp. MC-1] Length = 476 Score = 377 bits (967), Expect = e-102, Method: Composition-based stats. Identities = 155/472 (32%), Positives = 226/472 (47%), Gaps = 33/472 (6%) Query: 8 SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67 +VW R DLR++DN AL AA V+ V+I Q Q G + +L Sbjct: 6 PTVIVWFRRDLRLSDNPALLAATAMGQ--VLPVYIHENNQ--QEGGGGAWRWGLQQALAA 61 Query: 68 VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127 + L K C D L T +++NR Y ++RD+ +++ L Sbjct: 62 LNADLQGKL-------CCYVGDPARLLPEVAHAVGATGVYWNRLYTPQAIKRDRAIKQSL 114 Query: 128 QHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPF--RKALIQNLVQADLRSLPVPAIRL 184 R + +SF+ S+L P +L YKV+TP+ R L+Q++ + + + P Sbjct: 115 IERGLQVRSFNGSLLWEPWQVLKADKTPYKVFTPYYRRGCLVQDVPRQPMDAPPTVTWAT 174 Query: 185 TGPVTPSNIPRFFD-------YPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIP 237 P+ + D + ++ +GE+ A F + Y + RD P Sbjct: 175 LPAAAPAPSMQALDALLLGDVSWHKKWHGIWSMGEEAAQTRFEHFLSHGLACYDQGRDFP 234 Query: 238 AIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAF 297 TS+LS L G+LSP Q W L+ D + + +EL WREF + + Sbjct: 235 GRDCTSRLSTALQYGLLSPNQVWYGLEHAKAD-----EHSVDKFRSELAWREFAYYQLFH 289 Query: 298 YPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMIT 357 +PS+ K F P + W +D L W+ G TG PI+DA MR+L G MHNR+RM+ Sbjct: 290 FPSLP-HKNFQPKFDHFPWLEDEVALGRWQTGQTGIPIVDAGMRELWQTGVMHNRVRMLV 348 Query: 358 ASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKR 417 SFLVK+LL+DWR G +F L+D DLA N+ WQW A G D+ PYFRIFNP QG++ Sbjct: 349 GSFLVKNLLLDWRAGAAWFKDCLVDYDLAINSASWQWVAGCGADAAPYFRIFNPVTQGEK 408 Query: 418 FDPQGTFIRHWLPELNNVPTQYIHAPHSWLDK------NDLSLNYPLPIVDH 463 FD GT+ R ++PEL N+P QY+ P L +YP P+VD Sbjct: 409 FDRNGTYTRRFVPELANLPDQYLFKPWMAPASILRQAGVRLGQDYPEPLVDL 460 >gi|257082516|ref|ZP_05576877.1| deoxyribodipyrimidine photolyase [Enterococcus faecalis E1Sol] gi|256990546|gb|EEU77848.1| deoxyribodipyrimidine photolyase [Enterococcus faecalis E1Sol] Length = 477 Score = 377 bits (967), Expect = e-102, Method: Composition-based stats. Identities = 167/478 (34%), Positives = 242/478 (50%), Gaps = 24/478 (5%) Query: 11 LVWLRNDLRITDNKALYAACHNSDA-KVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69 ++W R DLR+ DNKAL A NS A ++I +F P+Q+ Q SA + F +ASL + Sbjct: 4 VMWFRRDLRLQDNKALAHALQNSAADELILLFQMNPQQFIQE--SANHNAF-FASLASFK 60 Query: 70 KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQ-RVTKLFYNRQYEINEVRRDKLLEKRLQ 128 + + Q + H + ++ + +++N +RD+ + + Sbjct: 61 ERIDQ-----EAHLQIMVGEPLDLFSRLKRKLPDWQAIYFNEDTCGFGAKRDQQAMRFFE 115 Query: 129 HRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187 I SF D+ L I + Y+V+TP+ + + + + Sbjct: 116 ENNIQSFSFQDAYLHGSEEIKKNDGSKYQVFTPYYNKWKEAPKETPIPVSYTAEKIFSAC 175 Query: 188 VTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSP 247 + P + + + + +GE+ A L F +K+ Y +RD P TS LS Sbjct: 176 LFPEEEAAYGEQIARIPLKHYSVGEKTARRCLNTFINQKLRSYENKRDFPYQDQTSHLST 235 Query: 248 YLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPF 307 +L G LS R W L + ++ EL WR+FY + + +P + Sbjct: 236 FLRTGELSIRTIWQEL------ASVPSSLSKETFKKELAWRDFYNMIYSAFPQQ-KEEAI 288 Query: 308 IPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLV 367 I+W D + W++G TG+PIIDAAMRQLN GWMHNRLRMITASFLVK+L + Sbjct: 289 QEKFRYIQWTNDPEMFVKWQKGETGYPIIDAAMRQLNQTGWMHNRLRMITASFLVKNLHI 348 Query: 368 DWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRH 427 DWR GE+YF L+D D A+N GGWQWAASTG D+VPYFRIFNP IQ K+FD G FI+ Sbjct: 349 DWRWGEKYFQKMLIDYDAANNIGGWQWAASTGTDAVPYFRIFNPIIQSKKFDNDGQFIKK 408 Query: 428 WLPELNNVPTQYIHAPHSWLDKND------LSLNYPLPIVDHKKACHHTLNQYYAAKK 479 ++PEL VP +YIH P+ + L NYP PIVD+ + TL Y A+K+ Sbjct: 409 YVPELKQVPQKYIHQPNLMNEALQTQYHVHLGENYPKPIVDYASSKKQTLFLYEASKE 466 >gi|327402941|ref|YP_004343779.1| Deoxyribodipyrimidine photo-lyase [Fluviicola taffensis DSM 16823] gi|327318449|gb|AEA42941.1| Deoxyribodipyrimidine photo-lyase [Fluviicola taffensis DSM 16823] Length = 434 Score = 377 bits (967), Expect = e-102, Method: Composition-based stats. Identities = 162/474 (34%), Positives = 226/474 (47%), Gaps = 48/474 (10%) Query: 10 HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69 L W R DLRI+DN LY A S KV A+FI + + ++ FI+ ++ +Q Sbjct: 5 ALFWHRRDLRISDNAGLYKALK-SGLKVQAIFIFDSQILAHLSKNDQRVLFIHQTIQNLQ 63 Query: 70 KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL-Q 128 ++ + G + E + + + +F NR YE N ++RDK + L + Sbjct: 64 QAYQKLGASLWIFHG----NPTEIIPQLVQKHEIKHVFCNRDYEPNALKRDKSVYDALTK 119 Query: 129 HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPA-IRLTGP 187 D V+ I+ Y V+TP+ K + L L+ PV I P Sbjct: 120 IGCQFSGSKDHVIFEKEEIVKSDGNPYHVFTPYMKRWKEQLNDFYLQPYPVEKYIHNLNP 179 Query: 188 VTPSNIPRFFDYPFQAIDP-MFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246 +P + F I FP E + + Y RD PAI GT++LS Sbjct: 180 NNHVELPTLSELGFSEIQTQHFPSAE---------IPQTIIQSYENTRDFPAINGTTRLS 230 Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP 306 +L G +S R+ + + + NELIWR+FY+ ++ FYP + Sbjct: 231 IHLRFGTISIRELAKQALKTN-----------EKYFNELIWRDFYQMILFFYPRTIE-ET 278 Query: 307 FIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLL 366 F +IEW D L QAW G TG+P++DA MR+LN G MHNR+RM+ ASF K L Sbjct: 279 FRKEYGRIEWEFDEKLFQAWCDGKTGYPLVDAGMRELNETGHMHNRVRMVVASFFCKHLF 338 Query: 367 VDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIR 426 DW++GE YF +LLD +LASN GGWQWAA G D+ PYFRIFNPT Q +RFDPQ +I+ Sbjct: 339 HDWKLGERYFAEKLLDFELASNVGGWQWAAGCGVDAAPYFRIFNPTTQQERFDPQFEYIK 398 Query: 427 HWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQ 480 W+PE + +YP PIV+HK A TL Y K Sbjct: 399 KWVPEFG-------------------TSDYPQPIVEHKWARERTLENYKKVLKA 433 >gi|315147299|gb|EFT91315.1| FAD binding domain of DNA photolyase [Enterococcus faecalis TX4244] Length = 477 Score = 376 bits (966), Expect = e-102, Method: Composition-based stats. Identities = 167/478 (34%), Positives = 241/478 (50%), Gaps = 24/478 (5%) Query: 11 LVWLRNDLRITDNKALYAACHNSDA-KVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69 ++W R DLR+ DNKAL A NS A ++I +F P+Q+ Q SA + F +ASL + Sbjct: 4 VMWFRRDLRLQDNKALAHALQNSAADELILLFQMNPQQFIQE--SANHNAF-FASLASFK 60 Query: 70 KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQ-RVTKLFYNRQYEINEVRRDKLLEKRLQ 128 + + Q + H + ++ + +++N +RD+ + + Sbjct: 61 ERIDQ-----EAHLQIMVGEPLDLFSRLKRKLPDWQAIYFNEDTCGFGAKRDQQAMRFFE 115 Query: 129 HRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187 I SF D+ L I + Y+V+TP+ + + + + Sbjct: 116 ENNIQSFSFQDAYLHGSEEIKKNDGSKYQVFTPYYNKWKEAPKETPIPVSYTAEKIFSAC 175 Query: 188 VTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSP 247 + P + + + + +GE+ A L F +K+ Y +RD P TS LS Sbjct: 176 LFPEEEAAYGEQIARIPLTHYSVGEKTARRCLNTFIDQKLQSYENKRDFPYQDQTSHLST 235 Query: 248 YLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPF 307 +L G LS R W L ++ EL WR+FY + + +P + Sbjct: 236 FLRTGELSIRTIWQEL------ASAPSSLSKETFKKELAWRDFYNMIYSTFPQQ-KEEAI 288 Query: 308 IPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLV 367 I+W D + W++G TG+PIIDAAMRQLN GWMHNRLRMITASFLVK+L + Sbjct: 289 QEKFRYIQWTNDPEMFAKWQKGETGYPIIDAAMRQLNQTGWMHNRLRMITASFLVKNLHI 348 Query: 368 DWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRH 427 DWR GE+YF L+D D A+N GGWQWAASTG D+VPYFRIFNP IQ K+FD G FI+ Sbjct: 349 DWRWGEKYFQKMLIDYDAANNIGGWQWAASTGTDAVPYFRIFNPIIQSKKFDNDGQFIKK 408 Query: 428 WLPELNNVPTQYIHAPHSWLDKND------LSLNYPLPIVDHKKACHHTLNQYYAAKK 479 ++PEL VP +YIH P+ + L NYP PIVD+ + TL Y A+K+ Sbjct: 409 YVPELKQVPQKYIHQPNLMNEALQTQYHVHLGENYPKPIVDYASSKKQTLFLYEASKE 466 >gi|255972759|ref|ZP_05423345.1| deoxyribodipyrimidine photolyase [Enterococcus faecalis T1] gi|255963777|gb|EET96253.1| deoxyribodipyrimidine photolyase [Enterococcus faecalis T1] Length = 473 Score = 376 bits (966), Expect = e-102, Method: Composition-based stats. Identities = 167/477 (35%), Positives = 241/477 (50%), Gaps = 24/477 (5%) Query: 12 VWLRNDLRITDNKALYAACHNSDA-KVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 +W R DLR+ DNKAL A NS A ++I +F P+Q+ Q SA + F +ASL ++ Sbjct: 1 MWFRRDLRLQDNKALAHALQNSAADELILLFQMNPQQFIQE--SANHNAF-FASLASFKE 57 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQ-RVTKLFYNRQYEINEVRRDKLLEKRLQH 129 + Q + H + ++ + +++N +RD+ + + Sbjct: 58 RIDQ-----EAHLQIMVGEPLDLFSRLKRKLPDWQAIYFNEDTCGFGAKRDQQAMRFFEE 112 Query: 130 RVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188 I SF D+ L I + Y+V+TP+ + + + + + Sbjct: 113 NNIQSFSFQDAYLHGSEEIKKNDGSKYQVFTPYYNKWKEAPKETPIPVSYTAEKIFSACL 172 Query: 189 TPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPY 248 P + + + + +GE+ A L F +K+ Y +RD P TS LS + Sbjct: 173 FPEEEAAYREQIARIPLTHYSVGEETARRRLNTFIDQKLQSYENKRDFPYQDQTSHLSTF 232 Query: 249 LSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFI 308 L G LS R W L + ++ EL WR+FY + + +P + Sbjct: 233 LRTGELSIRTIWQEL------ASMPSSLSKETFKKELAWRDFYNMIYSTFPQQ-KEEAIQ 285 Query: 309 PWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVD 368 I+W D + W++G TG+PIIDAAMRQLN GWMHNRLRMITASFLVK+L +D Sbjct: 286 EKFRYIQWTNDPEMFAKWQKGETGYPIIDAAMRQLNQTGWMHNRLRMITASFLVKNLHID 345 Query: 369 WRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHW 428 WR GE+YF L+D D A+N GGWQWAASTG D+VPYFRIFNP IQ K+FD G FI+ + Sbjct: 346 WRWGEKYFQKMLIDYDAANNIGGWQWAASTGTDAVPYFRIFNPIIQSKKFDNDGQFIKKY 405 Query: 429 LPELNNVPTQYIHAPHSWLDKND------LSLNYPLPIVDHKKACHHTLNQYYAAKK 479 +PEL VP +YIH P+ + L NYP PIVD+ + TL Y A+K+ Sbjct: 406 VPELKQVPQKYIHQPNLMNEALQTQYHVHLGENYPKPIVDYASSKKQTLFLYEASKE 462 >gi|229545787|ref|ZP_04434512.1| deoxyribodipyrimidine photolyase [Enterococcus faecalis TX1322] gi|256619098|ref|ZP_05475944.1| deoxyribodipyrimidine photolyase [Enterococcus faecalis ATCC 4200] gi|256853160|ref|ZP_05558530.1| deoxyribodipyrimidine photolyase [Enterococcus faecalis T8] gi|307274924|ref|ZP_07556087.1| FAD binding domain of DNA photolyase [Enterococcus faecalis TX2134] gi|307291962|ref|ZP_07571831.1| FAD binding domain of DNA photolyase [Enterococcus faecalis TX0411] gi|229309099|gb|EEN75086.1| deoxyribodipyrimidine photolyase [Enterococcus faecalis TX1322] gi|256598625|gb|EEU17801.1| deoxyribodipyrimidine photolyase [Enterococcus faecalis ATCC 4200] gi|256711619|gb|EEU26657.1| deoxyribodipyrimidine photolyase [Enterococcus faecalis T8] gi|306496960|gb|EFM66508.1| FAD binding domain of DNA photolyase [Enterococcus faecalis TX0411] gi|306508372|gb|EFM77479.1| FAD binding domain of DNA photolyase [Enterococcus faecalis TX2134] gi|315029350|gb|EFT41282.1| FAD binding domain of DNA photolyase [Enterococcus faecalis TX4000] gi|315034003|gb|EFT45935.1| FAD binding domain of DNA photolyase [Enterococcus faecalis TX0017] Length = 477 Score = 376 bits (966), Expect = e-102, Method: Composition-based stats. Identities = 167/478 (34%), Positives = 241/478 (50%), Gaps = 24/478 (5%) Query: 11 LVWLRNDLRITDNKALYAACHNSDA-KVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69 ++W R DLR+ DNKAL A NS A ++I +F P+Q+ Q SA + F +ASL + Sbjct: 4 VMWFRRDLRLQDNKALAHALQNSAADELILLFQMNPQQFIQE--SANHNAF-FASLASFK 60 Query: 70 KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQ-RVTKLFYNRQYEINEVRRDKLLEKRLQ 128 + + Q + H + ++ + +++N +RD+ + + Sbjct: 61 ERIDQ-----EAHLQIMVGEPLDLFSRLKRKLPDWQAIYFNEDTCGFGAKRDQQAMRFFE 115 Query: 129 HRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187 I SF D+ L I + Y+V+TP+ + + + + Sbjct: 116 ENNIQSFSFQDAYLHGSEEIKKNDGSKYQVFTPYYNKWKEAPKETPIPVSYTAEKIFSAC 175 Query: 188 VTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSP 247 + P + + + + +GE+ A L F +K+ Y +RD P TS LS Sbjct: 176 LFPEEEAAYGEQIARIPLTHYSVGEKTARRCLNTFIDQKLQSYENKRDFPYQDQTSHLST 235 Query: 248 YLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPF 307 +L G LS R W L ++ EL WR+FY + + +P + Sbjct: 236 FLRTGELSIRTIWQEL------ASAPSSLSKETFKKELAWRDFYNMIYSTFPQQ-KEEVI 288 Query: 308 IPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLV 367 I+W D + W++G TG+PIIDAAMRQLN GWMHNRLRMITASFLVK+L + Sbjct: 289 QEKFRYIQWTNDPEMFVKWQKGETGYPIIDAAMRQLNQTGWMHNRLRMITASFLVKNLHI 348 Query: 368 DWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRH 427 DWR GE+YF L+D D A+N GGWQWAASTG D+VPYFRIFNP IQ K+FD G FI+ Sbjct: 349 DWRWGEKYFQKMLIDYDAANNIGGWQWAASTGTDAVPYFRIFNPIIQSKKFDNDGQFIKK 408 Query: 428 WLPELNNVPTQYIHAPHSWLDKND------LSLNYPLPIVDHKKACHHTLNQYYAAKK 479 ++PEL VP +YIH P+ + L NYP PIVD+ + TL Y A+K+ Sbjct: 409 YVPELKQVPQKYIHQPNLMNEALQTQYHVHLGENYPKPIVDYASSKKQTLFLYEASKE 466 >gi|207728124|ref|YP_002256518.1| deoxyribodipyrimidine photolyase, class 1 protein [Ralstonia solanacearum MolK2] gi|206591369|emb|CAQ56981.1| deoxyribodipyrimidine photolyase, class 1 protein [Ralstonia solanacearum MolK2] Length = 522 Score = 376 bits (966), Expect = e-102, Method: Composition-based stats. Identities = 167/490 (34%), Positives = 240/490 (48%), Gaps = 31/490 (6%) Query: 10 HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGI----SARQSHFIYASL 65 LVW R DLR D+ AL+ A + +V F+ + R+ FI A++ Sbjct: 27 GLVWFRRDLRHIDHAALHYALRHC-REVFCAFVFDRGILDPLLARGLRADRRVEFIRAAV 85 Query: 66 LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125 ++ +L + G D + + S Q V +F N E + RD + Sbjct: 86 EALRGALREAGGELIVLH----DHAHHAIPSLAQQLGVEAVFANHDEEPAALARDAAVRD 141 Query: 126 RLQHR-VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL 184 L + F D V+ +LN + Y V+TP++ A + + DLR+ P+ Sbjct: 142 ALARQPCAWFDFKDQVIFERAEVLNGQGKPYGVFTPYKNAWLAAVSPFDLRAYPIEPHLH 201 Query: 185 TGPVTPSNI----PRFFDYPFQAID---PMFPIGEQNALHILRKFCKEKVYYYVEQRDIP 237 P + P F + P G A +L F ++ Y +RD P Sbjct: 202 ALARPPQGLAPATPSLEAMGFARSNLSAIALPTGMSGAKALLDDF-ATRMDDYHARRDYP 260 Query: 238 AIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAF 297 A++G S LS +L G +S R L ++ GA +WL+ELIWR+FY ++ Sbjct: 261 AVRGPSYLSTHLRFGTVSIRT----LAAHAHAAMLHGSRGAATWLSELIWRDFYFMILHH 316 Query: 298 YPSVCMGKPFIPWTEKIEWNKDSH---LLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLR 354 P + G F P ++I W + AW+ TG+P++DAAM Q+ G+MHNRLR Sbjct: 317 RPDLADGASFRPEFDRIRWVEGDAGDVRFAAWRDARTGYPLVDAAMLQIRQSGYMHNRLR 376 Query: 355 MITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQ 414 M+ ASFL+KDL VDWR GE YF L D D A+NNGGWQWAAS+G D+ P+FRIFNP Q Sbjct: 377 MVAASFLIKDLGVDWRRGEHYFADALNDFDFAANNGGWQWAASSGCDAQPWFRIFNPVTQ 436 Query: 415 GKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDK------NDLSLNYPLPIVDHKKACH 468 ++FDPQG FIR +LP+L +P +Y+HAP + L YP PIV+H A Sbjct: 437 SEKFDPQGHFIRKYLPQLAKLPDRYLHAPWTAPADVLKTAGVALGETYPQPIVEHAAARA 496 Query: 469 HTLNQYYAAK 478 TL +Y A+ Sbjct: 497 ATLERYAPAQ 506 >gi|260765931|gb|ACX49996.1| cryptochrome 1 [Capsella bursa-pastoris] Length = 660 Score = 376 bits (966), Expect = e-102, Method: Composition-based stats. Identities = 139/490 (28%), Positives = 226/490 (46%), Gaps = 25/490 (5%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 +VW R DLR+ DN AL AA VIAVF+ PE+ + ++ SL Q+ Sbjct: 18 IVWFRRDLRVEDNPALAAAVRAG--PVIAVFVWAPEEEGHYHPGRVSRWWLKNSLAQLDS 75 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL-QH 129 SL G + + DS+ L +++F+N Y+ + RD + L Sbjct: 76 SLRSLGTCLITKRST---DSVTSLLEVVKSTGASQIFFNHLYDPLSLVRDHRAKXVLTAQ 132 Query: 130 RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189 + +SF+ +L P + + + + ++ F + + + LP I Sbjct: 133 GIAVRSFNADLLYEPWEVTDELGRPFSMFGAFWERCLSMPYDPESPLLPPKKIISGDVSK 192 Query: 190 PSNIPRFFDYPFQA-----IDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244 P F+ + + + G NA L F + Y + R TS Sbjct: 193 CVTDPLVFEDDSEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSATTSF 252 Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFS----WLNELIWREFYRHLMAFYPS 300 LSP+L G +S R+ ++ ++ + V + +L + RE+ R++ +P Sbjct: 253 LSPHLHFGEVSVRKVFHLVRIKQVAWANEGNEAGEESVNLFLKSIGLREYSRYISFNHP- 311 Query: 301 VCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASF 360 +P + + W D + +AW+QG TG+P++DA MR+L GW+H+R+R++ +SF Sbjct: 312 YSHERPLLGHLKFFPWAVDENYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSF 371 Query: 361 LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDP 420 VK L + WR G +YF LLD DL S+ GWQ+ T DS + RI NP +G +FDP Sbjct: 372 FVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYITGTLPDSREFDRIDNPQFEGYKFDP 431 Query: 421 QGTFIRHWLPELNNVPTQYIHAPHSWLDKN------DLSLNYPLPIVDHKKACHH---TL 471 G ++R WLPEL+ +PT +IH P + + +L NYP PIV +A L Sbjct: 432 NGEYVRRWLPELSRLPTDWIHHPWNAPESVLQAAGIELGSNYPRPIVGLDEAKARLHEAL 491 Query: 472 NQYYAAKKQS 481 +Q + + S Sbjct: 492 SQMWQLEAAS 501 >gi|91217400|ref|ZP_01254360.1| deoxyribodipyrimidine photolyase-class I [Psychroflexus torquis ATCC 700755] gi|91184508|gb|EAS70891.1| deoxyribodipyrimidine photolyase-class I [Psychroflexus torquis ATCC 700755] Length = 457 Score = 376 bits (966), Expect = e-102, Method: Composition-based stats. Identities = 156/476 (32%), Positives = 226/476 (47%), Gaps = 47/476 (9%) Query: 8 SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67 V + W R D+R+ DN LY A + V+ +FI + + FI+ L + Sbjct: 26 KVRVFWFRRDMRLEDNVGLYHAL-SGVFSVVPLFIFDKNILNELQEDDARISFIFEQLQK 84 Query: 68 VQKSLSQK-GIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 ++ L G + + + E L + V ++ NR YE +RD + Sbjct: 85 MRSHLQDHYGSSIATYHSTPEEAFHELLKDF----EVEAVYTNRDYEPYAHQRDSKINTL 140 Query: 127 LQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLP-VPAIRL 184 L ++ I F D V+ + + MY V+TP+ + + DL++ P + Sbjct: 141 LANQGIEFHDFKDQVIFEKTEVEKNDGGMYLVFTPYMRQWKKEFENIDLKTFPSEDHLDN 200 Query: 185 TGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244 T + D F P K+ + +Y + R+IP+I+GTS+ Sbjct: 201 TYKNSMLPDVSLSDMGFVKSSIQVPD---------YNITKDLLEHYEDTRNIPSIEGTSR 251 Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304 LSPYL G++ R+ + ++LNELIWREFY+ ++ +P Sbjct: 252 LSPYLRFGLIGYRKLIQAALSVKNE----------TFLNELIWREFYKAILYNHPK-TQN 300 Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364 F P ++IEW D + + WK+G TG+PI+DA MRQLN GWMHNRLRM+ SFL K Sbjct: 301 SAFKPKYDRIEWRNDENEFEKWKKGKTGYPIVDAGMRQLNETGWMHNRLRMVVGSFLCKH 360 Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424 LL+DWR GE YF +LLD +++SN GGWQW A +G D+ PYFRIFNP Q RFD + Sbjct: 361 LLIDWRWGEAYFAEKLLDYEMSSNVGGWQWVAGSGVDAAPYFRIFNPYSQTDRFDKDKKY 420 Query: 425 IRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQ 480 I W+PELN + YP P+VDHK A L Y A K Sbjct: 421 IMKWIPELN-------------------TDRYPKPMVDHKIARERCLETYKEAVKS 457 >gi|126439700|ref|YP_001059701.1| deoxyribodipyrimidine photolyase [Burkholderia pseudomallei 668] gi|126219193|gb|ABN82699.1| deoxyribodipyrimidine photolyase [Burkholderia pseudomallei 668] Length = 486 Score = 376 bits (965), Expect = e-102, Method: Composition-based stats. Identities = 155/494 (31%), Positives = 241/494 (48%), Gaps = 24/494 (4%) Query: 1 MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHF 60 M ++ +++ +VW R+DLR++D+ AL A S VI V++ + A + Sbjct: 1 MSSSISIAPAVVWFRDDLRVSDHPALMRAAE-SGRPVIGVYVFDERAGGRPLGGAARWW- 58 Query: 61 IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120 ++ SL ++L D + + S+ ++++R+Y + D Sbjct: 59 LHGSL----RALGAALAALGGTLALLRGDEHDTIVSFAAALGAGAVYWSRRYALAARAVD 114 Query: 121 KLLEKRLQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPV 179 ++ L + I ++F+ S+L PG ++N + Y+V++ + +A ++ V A P Sbjct: 115 NAVQTALDAQGIAVETFNASLLFEPGDLVNADGRPYQVFSAYWRAAMRRGVPAPPLGAPR 174 Query: 180 PAIRLTGPVTPSNIPRFFD-YPFQAIDPMFPIG--------EQNALHILRKFCKEKVYYY 230 P + D + P + G E A LR F ++ Y Sbjct: 175 RLNGGALPAALARQCVALDALGLEPTGPDWAGGLRDAWRFGEDAAHRRLRAFVDSRLGGY 234 Query: 231 VEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREF 290 +RD P I TS+LSPY+ G LS RQ W+ + + ++ +L+EL WREF Sbjct: 235 AAERDRPGIASTSRLSPYVRFGNLSARQLWHAAADAYAHGAAT-QADLDKFLSELGWREF 293 Query: 291 YRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMH 350 L+ +P + + + + W D L AW++G TG+P +DA MR+L GWMH Sbjct: 294 GWTLLHHFPDLPR-RNLRHTLDGMPWRDDPAALAAWRRGATGYPFVDAGMRELWATGWMH 352 Query: 351 NRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFN 410 NR+RM+ ASFLVK LL+DWR GE +F L+D D ASN WQW A G D+ PYFRIFN Sbjct: 353 NRVRMVCASFLVKHLLIDWRAGEAWFWDTLVDADAASNAANWQWVAGCGADAAPYFRIFN 412 Query: 411 PTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKN------DLSLNYPLPIVDHK 464 P QG++FDP G ++R W+PEL +P IH P + L YPLPIV H Sbjct: 413 PVAQGRKFDPDGAYVRRWVPELAGLPPATIHEPWAAPGAQLAAAGVRLGETYPLPIVAHD 472 Query: 465 KACHHTLNQYYAAK 478 A L+ + A + Sbjct: 473 AARRRALDAFGAIR 486 >gi|330927872|ref|XP_003302036.1| hypothetical protein PTT_13712 [Pyrenophora teres f. teres 0-1] gi|311322808|gb|EFQ89849.1| hypothetical protein PTT_13712 [Pyrenophora teres f. teres 0-1] Length = 534 Score = 376 bits (965), Expect = e-102, Method: Composition-based stats. Identities = 145/494 (29%), Positives = 233/494 (47%), Gaps = 35/494 (7%) Query: 12 VWLR-NDLRITDNKALYAA---CHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67 W DLRI DN AL+ A ++ ++ +++ P HG S + F+ L Sbjct: 50 HWFHPKDLRIQDNTALHHASELAQSARKPLVCIYVDCPADESWHGTSPARVDFMCEGLKI 109 Query: 68 VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127 +QK L I + QC N +E + +Q+V+ +F N +YEI+E+RRD L K + Sbjct: 110 MQKELKDLNIPLVFLQCENRKKIVETAVEWLKKQQVSHVFGNYEYEIDEMRRDFKLVKTV 169 Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187 ++ + D ++ PG++L KV+TP+ KA + L P Sbjct: 170 GDKIQVSLYHDQTVVEPGTMLTGTGTPMKVFTPYHKAWLAKLRSEPELLDTNPPPAANPS 229 Query: 188 VTPSNIPRFFD---------------YPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVE 232 ++ FD + I ++P G A + F K+ + +Y Sbjct: 230 SMKKDLKDLFDTLAPKPASDKQFTSEEEKKRIRKLWPAGHSAASARMDTFLKQ-ISHYAA 288 Query: 233 QRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVD----LLIKPKSGAFSWLNELIWR 288 R PA TS++S Y S G++S R ++ + K +G + W+ E+++R Sbjct: 289 TRSNPAANSTSRMSAYFSAGMISMRSTLQKVVDYNRGSTDFTEAKASTGVYGWVREIVFR 348 Query: 289 EFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGW 348 E YR P M P + ++W D + W +G TG P IDA MRQLN + Sbjct: 349 ELYRQTTMTTPHTSMNLPQNLKFDAVQWEDDEEGWEKWYKGQTGEPFIDAGMRQLNAEAY 408 Query: 349 MHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRI 408 MHNRLRM +S+L +LL+D+R GE YF L+D DL++N GW+ P + + Sbjct: 409 MHNRLRMNVSSYLYCNLLLDYRRGERYFAETLIDWDLSNNTQGWE----------PSYTV 458 Query: 409 FNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLS-LNYPLPIVDHKKAC 467 FNP Q ++ DP G +IR W+PEL +V + + AP++ L K + L YP P VD K+ Sbjct: 459 FNPVSQAEKNDPDGEYIRKWVPELRHVEGKAVFAPYARLSKKEFEKLGYPKPHVDWKETK 518 Query: 468 HHTLNQYYAAKKQS 481 ++++ + + Sbjct: 519 ARAIDRFKRGLRSA 532 >gi|167570597|ref|ZP_02363471.1| deoxyribodipyrimidine photolyase [Burkholderia oklahomensis C6786] Length = 486 Score = 376 bits (965), Expect = e-102, Method: Composition-based stats. Identities = 152/494 (30%), Positives = 234/494 (47%), Gaps = 24/494 (4%) Query: 1 MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHF 60 M A +++ +VW R+DLR++D+ AL A S VI ++ E + + Sbjct: 1 MSAVFSIAPAVVWFRDDLRVSDHPALVRAAE-SGRPVIGAYVFD-ECAGGRPLGGAARWW 58 Query: 61 IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120 ++ SL + +L+ G D + + S+ +++NR+Y + + D Sbjct: 59 LHGSLRALDAALAALGSRLVLLSG----DEADTITSFAAALGAGAVYWNRRYALAQRAVD 114 Query: 121 KLLEKRLQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPV 179 ++ L+ R I ++F+ S+L PG ++ + + Y+V+T + +A ++ V A + P Sbjct: 115 NTVQTALEARGIDVETFNASLLFEPGDLVTDSGRPYQVFTAYWRAAMRRGVHAAPLAAPR 174 Query: 180 PAIRL-TGPVTPSNIPRFFDYPFQAIDPMFPIG--------EQNALHILRKFCKEKVYYY 230 P P + G E A LR F ++ Y Sbjct: 175 RLKGCELPPRLAQRQVELDALGLAPARPDWAGGLRETWTCGEDAAHRRLRAFVDSRLGGY 234 Query: 231 VEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREF 290 RD P TS+LSP++ G LS RQ W+ + ++ ++ EL WREF Sbjct: 235 ATGRDRPGAASTSRLSPFVRFGNLSVRQVWHAAVDAHAH-GAATQADLDTFCRELGWREF 293 Query: 291 YRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMH 350 + +P + + + + W D L AW++G TG+P +DA MR+L GWMH Sbjct: 294 CYGQLYRFPDLAR-RNLRHNLDGMPWRDDPAALAAWRRGATGYPFVDAGMRELWATGWMH 352 Query: 351 NRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFN 410 NR RM+ ASFLVK LL+DWR G+ +F L+D D ASN WQW A G D+ PYFRIFN Sbjct: 353 NRARMVCASFLVKHLLIDWREGDAWFWDTLVDADAASNAANWQWVAGCGADAAPYFRIFN 412 Query: 411 PTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKN------DLSLNYPLPIVDHK 464 P QGK+FDP G ++R W+PEL +P IH P + L YPLPIV H Sbjct: 413 PIAQGKKFDPDGAYVRRWVPELAGLPANAIHEPWAAPAARLAAAGVRLGDTYPLPIVAHD 472 Query: 465 KACHHTLNQYYAAK 478 A L+ + + Sbjct: 473 AARKRALDAWVTVR 486 >gi|110962429|gb|ABH03083.1| cryptochrome 1b [Sylvia borin] Length = 587 Score = 375 bits (964), Expect = e-102, Method: Composition-based stats. Identities = 124/498 (24%), Positives = 201/498 (40%), Gaps = 32/498 (6%) Query: 7 MSVH-LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASL 65 M V+ + W R LR+ DN AL +D V V+I P + + F+ L Sbjct: 1 MGVNAVHWFRKGLRLHDNPALRECIQGADT-VRCVYILDPWFAGSSNVGINRWRFLLQCL 59 Query: 66 LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125 + +L + + + + + KL E RD ++K Sbjct: 60 EDLDANLRKLNSRLFVIRG----QPADVFPRLFKEWNIAKLSIEYDSEPFGKERDAAIKK 115 Query: 126 RLQHRVICKSFD-DSVLLPPGSILN-HALQMYKVYTPFRKALIQN-LVQADLRSL-PVPA 181 + L I+ + Q Y F+ + + ++ + ++ P Sbjct: 116 LASEAGVEVIVRISHTLYDLDKIIELNGGQPPLTYKRFQTLISRMEPLEMPVETITPEVM 175 Query: 182 IRLTGPVTPSNIPR-----FFDYPFQA---IDPMFPIGEQNALHILRKFCKEKVYYYVEQ 233 + T PV+ + + + F ++P GE AL L + + K + + Sbjct: 176 KKCTTPVSDDHDEKYGVPSLEELGFDTDGLPSAVWPGGETEALTRLERHLERKAWVANFE 235 Query: 234 RDIPAIQGT----SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWRE 289 R + LSPYL G LS R + +L + + + K S S +L+WRE Sbjct: 236 RPRMNANSLLASPTGLSPYLRFGCLSCRLFYFKLTDLYKKVK-KNSSPPLSLYGQLLWRE 294 Query: 290 FYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWM 349 F+ P + P +I W+K+ L W +G TGFP IDA M QL GW+ Sbjct: 295 FFYTAATNNPRFDKMEG-NPICVQIPWDKNPEALAKWAEGRTGFPWIDAIMTQLRQEGWI 353 Query: 350 HNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRI 408 H+ R A FL + DL + W G + F LLD D + N G W W S + +F Sbjct: 354 HHLARHAVACFLTRGDLWISWEEGMKVFEELLLDADWSVNAGSWMW-LSCSSFFQQFFHC 412 Query: 409 FNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLD------KNDLSLNYPLPIVD 462 + P G+R DP G +IR +LP L P +YI+ P + + K + +NYP P+V+ Sbjct: 413 YCPVGFGRRTDPNGDYIRRYLPVLRGFPAKYIYDPWNAPESIQKAAKCIIGVNYPKPMVN 472 Query: 463 HKKACHHTLNQYYAAKKQ 480 H +A + + +Q Sbjct: 473 HAEASRLNIERMKQIYQQ 490 >gi|82091801|sp|Q6ZZY0|CRY1_SYLBO RecName: Full=Cryptochrome-1 gi|45535501|emb|CAG14931.1| cryptochrome 1 [Sylvia borin] Length = 620 Score = 375 bits (964), Expect = e-102, Method: Composition-based stats. Identities = 124/498 (24%), Positives = 201/498 (40%), Gaps = 32/498 (6%) Query: 7 MSVH-LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASL 65 M V+ + W R LR+ DN AL +D V V+I P + + F+ L Sbjct: 1 MGVNAVHWFRKGLRLHDNPALRECIQGADT-VRCVYILDPWFAGSSNVGINRWRFLLQCL 59 Query: 66 LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125 + +L + + + + + KL E RD ++K Sbjct: 60 EDLDANLRKLNSRLFVIRG----QPADVFPRLFKEWNIAKLSIEYDSEPFGKERDAAIKK 115 Query: 126 RLQHRVICKSFD-DSVLLPPGSILN-HALQMYKVYTPFRKALIQN-LVQADLRSL-PVPA 181 + L I+ + Q Y F+ + + ++ + ++ P Sbjct: 116 LASEAGVEVIVRISHTLYDLDKIIELNGGQPPLTYKRFQTLISRMEPLEMPVETITPEVM 175 Query: 182 IRLTGPVTPSNIPR-----FFDYPFQA---IDPMFPIGEQNALHILRKFCKEKVYYYVEQ 233 + T PV+ + + + F ++P GE AL L + + K + + Sbjct: 176 KKCTTPVSDDHDEKYGVPSLEELGFDTDGLPSAVWPGGETEALTRLERHLERKAWVANFE 235 Query: 234 RDIPAIQGT----SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWRE 289 R + LSPYL G LS R + +L + + + K S S +L+WRE Sbjct: 236 RPRMNANSLLASPTGLSPYLRFGCLSCRLFYFKLTDLYKKVK-KNSSPPLSLYGQLLWRE 294 Query: 290 FYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWM 349 F+ P + P +I W+K+ L W +G TGFP IDA M QL GW+ Sbjct: 295 FFYTAATNNPRFDKMEG-NPICVQIPWDKNPEALAKWAEGRTGFPWIDAIMTQLRQEGWI 353 Query: 350 HNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRI 408 H+ R A FL + DL + W G + F LLD D + N G W W S + +F Sbjct: 354 HHLARHAVACFLTRGDLWISWEEGMKVFEELLLDADWSVNAGSWMW-LSCSSFFQQFFHC 412 Query: 409 FNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLD------KNDLSLNYPLPIVD 462 + P G+R DP G +IR +LP L P +YI+ P + + K + +NYP P+V+ Sbjct: 413 YCPVGFGRRTDPNGDYIRRYLPVLRGFPAKYIYDPWNAPESIQKAAKCIIGVNYPKPMVN 472 Query: 463 HKKACHHTLNQYYAAKKQ 480 H +A + + +Q Sbjct: 473 HAEASRLNIERMKQIYQQ 490 >gi|260765927|gb|ACX49994.1| cryptochrome 1 [Capsella bursa-pastoris] gi|260765929|gb|ACX49995.1| cryptochrome 1 [Capsella bursa-pastoris] Length = 684 Score = 375 bits (964), Expect = e-102, Method: Composition-based stats. Identities = 139/490 (28%), Positives = 226/490 (46%), Gaps = 25/490 (5%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 +VW R DLR+ DN AL AA VIAVF+ PE+ + ++ SL Q+ Sbjct: 18 IVWFRRDLRVEDNPALAAAVRAG--PVIAVFVWAPEEEGHYHPGRVSRWWLKNSLAQLDS 75 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL-QH 129 SL G + + DS+ L +++F+N Y+ + RD + L Sbjct: 76 SLRSLGTCLITKRST---DSVASLLXVVKSTGASQIFFNHLYDPLSLVRDHRAKDVLTAQ 132 Query: 130 RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189 + +SF+ +L P + + + + ++ F + + + LP I Sbjct: 133 GIAVRSFNADLLYEPWEVTDELGRPFSMFGAFWERCLSMPYDPESPLLPPKKIISGDVSK 192 Query: 190 PSNIPRFFDYPFQA-----IDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244 P F+ + + + G NA L F + Y + R TS Sbjct: 193 CVTDPLVFEDDSEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSATTSF 252 Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFS----WLNELIWREFYRHLMAFYPS 300 LSP+L G +S R+ ++ ++ + V + +L + RE+ R++ +P Sbjct: 253 LSPHLHFGEVSVRKVFHLVRIKQVAWANEGNEAGEESVNLFLKSIGLREYSRYISFNHP- 311 Query: 301 VCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASF 360 +P + + W D + +AW+QG TG+P++DA MR+L GW+H+R+R++ +SF Sbjct: 312 YSHERPLLGHLKFFPWAVDENYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSF 371 Query: 361 LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDP 420 VK L + WR G +YF LLD DL S+ GWQ+ T DS + RI NP +G +FDP Sbjct: 372 FVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYITGTLPDSREFDRIDNPQFEGYKFDP 431 Query: 421 QGTFIRHWLPELNNVPTQYIHAPHSWLDKN------DLSLNYPLPIVDHKKACHH---TL 471 G ++R WLPEL+ +PT +IH P + + +L NYP PIV +A L Sbjct: 432 NGEYVRRWLPELSRLPTDWIHHPWNAPESVLQAAGIELGSNYPRPIVGLDEAKARLHEAL 491 Query: 472 NQYYAAKKQS 481 +Q + + S Sbjct: 492 SQMWQLEAAS 501 >gi|195997383|ref|XP_002108560.1| hypothetical protein TRIADDRAFT_51590 [Trichoplax adhaerens] gi|190589336|gb|EDV29358.1| hypothetical protein TRIADDRAFT_51590 [Trichoplax adhaerens] Length = 497 Score = 375 bits (964), Expect = e-102, Method: Composition-based stats. Identities = 150/490 (30%), Positives = 230/490 (46%), Gaps = 20/490 (4%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M +VWLR DLR+ DN AL+ A V+ ++I E + + +++ SL Sbjct: 1 MVCTVVWLRYDLRLIDNPALFHAAKRG--HVVIIYILDQETPGKWKLGKASLWWLHHSLK 58 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 +Q L + I + + D + L LQ R +++NR YE V+RD+ +E+ Sbjct: 59 SLQNDLLKFNIPLILRRGA---DPLTILRQVLLQSRADAVYWNRCYEPYAVKRDQSIEEA 115 Query: 127 LQ-HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185 L+ V SF +L P ++ + + +K+Y + + + P L Sbjct: 116 LKVDDVTVGSFQAGLLYEPWAVKSAKDEPFKLYIMYWNRCLSSDQPRKPYDKPRFNNTLD 175 Query: 186 GPVTPSNIPRFF------DYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAI 239 V + + D+ + + GE A+ L++F K K+ Y + ++ Sbjct: 176 IKVQTDTLDSWHLVSAKKDWKDELKIVIGCPGEDGAIRKLKEFIKYKLVDYRKGKETVWP 235 Query: 240 QGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYP 299 TSQLS +L G +SP W+ KE V L P + +L EL WR+F HL+ +YP Sbjct: 236 SKTSQLSTHLHFGEISPFVVWHTAKE-SVHLRSVPSDSSQKFLTELGWRDFCFHLLHYYP 294 Query: 300 SVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITAS 359 K + ++ W D L+ W+QG TG+PI+DA MR+L G + R+R I AS Sbjct: 295 DFPE-KSYKLNFDETIWKVDKEKLKLWQQGKTGYPIVDAGMRELLNTGVISYRVRTIVAS 353 Query: 360 FLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFD 419 FL K LL+ W+ G E+F L+D DLA N+ WQ G D YF I NP QG+RFD Sbjct: 354 FLTKHLLIPWQNGAEWFWDTLVDADLALNSCSWQRITGCGADISSYFYIINPVTQGERFD 413 Query: 420 PQGTFIRHWLPELNNVPTQYIHAPHSWLDKN------DLSLNYPLPIVDHKKACHHTLNQ 473 G ++R W+PE+ + YI P L YP IV+HKKA L + Sbjct: 414 SDGNYVRKWIPEIAKLSNDYIQQPWEAPAAVLKKAGIALGKTYPKCIVNHKKARDVALTK 473 Query: 474 YYAAKKQSLL 483 + K+Q + Sbjct: 474 FAPLKRQEPM 483 >gi|124007987|ref|ZP_01692687.1| deoxyribodipyrimidine photo-lyase [Microscilla marina ATCC 23134] gi|123986571|gb|EAY26370.1| deoxyribodipyrimidine photo-lyase [Microscilla marina ATCC 23134] Length = 447 Score = 375 bits (964), Expect = e-102, Method: Composition-based stats. Identities = 167/478 (34%), Positives = 243/478 (50%), Gaps = 50/478 (10%) Query: 8 SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQ-HGISARQSHFIYASLL 66 S+ + W R DLR+ DN LY A N + V+ +FI + +IYA+L Sbjct: 3 SITVFWFRRDLRLHDNTGLYEALKN-EQNVLPIFIFDRHILDDLEDKKDLRVAYIYAALQ 61 Query: 67 QVQKSLSQKGI----VFQYHQCSNFDDSIEWLDSYCLQ-QRVTKLFYNRQYEINEVRRDK 121 Q+Q+SL+ V+ + F+ + + + +V ++ N YE +RD+ Sbjct: 62 QIQQSLADDLQSSLKVYYDYPEQVFEQLTQAGITLNGETYQVKSVYTNHDYEPYARQRDE 121 Query: 122 LLEKRLQH-RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADL--RSLP 178 +++ L + V SF D V+ +L +A + Y V+TP+ K +L A L R + Sbjct: 122 KVQQILSNSGVAWHSFKDQVIFEKQEVLTNADKPYTVFTPYSKKWKHHLTDAHLQERLVA 181 Query: 179 VPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPA 238 A L + F I+ F + K+ V Y + RD PA Sbjct: 182 SHAQNLLKLSPQLPLMPLEKTGFVDINKSFSS---------KTIKKQLVIDYQQNRDFPA 232 Query: 239 IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFY 298 +QGTS+LS +L G +S R+ ++ + +WLNELIWREFY ++ + Sbjct: 233 VQGTSRLSVHLRFGTVSIRKIVKAAQKY-----------SDTWLNELIWREFYMMILYSF 281 Query: 299 PSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITA 358 P V + K F P + I+W + + W +G TG+PI+DA MR+LNT G+MHNR+RMITA Sbjct: 282 PHV-VDKSFKPAYDCIQWRNNPDEFKRWCEGTTGYPIVDAGMRELNTTGFMHNRVRMITA 340 Query: 359 SFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRF 418 SFL K LL+DWR GE YF +LLD DL++NNGGWQWAA +G D+ PYFR+FNP Q ++F Sbjct: 341 SFLTKHLLIDWRWGEAYFAKKLLDYDLSANNGGWQWAAGSGCDAAPYFRVFNPYAQTEKF 400 Query: 419 DPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYA 476 D Q +IR W+PE YP PIV+HK A L+ Y A Sbjct: 401 DKQRQYIRQWVPEFEL-------------------SRYPAPIVEHKFARQRALDTYKA 439 >gi|257089919|ref|ZP_05584280.1| deoxyribodipyrimidine photolyase [Enterococcus faecalis CH188] gi|256998731|gb|EEU85251.1| deoxyribodipyrimidine photolyase [Enterococcus faecalis CH188] Length = 477 Score = 375 bits (963), Expect = e-102, Method: Composition-based stats. Identities = 167/478 (34%), Positives = 242/478 (50%), Gaps = 24/478 (5%) Query: 11 LVWLRNDLRITDNKALYAACHNSDA-KVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69 ++W R DLR+ DNKAL A NS A ++I +F P+Q+ Q SA + F +ASL + Sbjct: 4 VMWFRRDLRLQDNKALAHALQNSAADELILLFQMNPQQFIQE--SANHNAF-FASLASFK 60 Query: 70 KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQ-RVTKLFYNRQYEINEVRRDKLLEKRLQ 128 + + Q + H + ++ + +++N +RD+ + + Sbjct: 61 ERIDQ-----EAHLQIMVGEPLDLFSRLKRKLPDWQAIYFNEDTCGFGAKRDQQAMRFFE 115 Query: 129 HRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187 I SF D+ L I + Y+V+TP+ + + + + Sbjct: 116 ENNIQSFSFQDAYLHGSEEIKKNDGSKYQVFTPYYNKWKEAPKETPIPVSYTAEKIFSTC 175 Query: 188 VTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSP 247 + P + + + + +GE+ A L F +K+ Y +RD P TS LS Sbjct: 176 LFPEEEAAYREQIARIPLKHYSVGEKTARRCLNTFIDQKLRSYENKRDFPYQDQTSHLST 235 Query: 248 YLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPF 307 +L G LS R W L + ++ EL WR+FY + + +P + Sbjct: 236 FLRTGELSIRTIWQEL------ASMPSSLSKETFKKELAWRDFYNMIYSTFPQQ-KEEAI 288 Query: 308 IPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLV 367 I+W D + W++G TG+PIIDAAMRQLN GWMHNRLRMITASFLVK+L + Sbjct: 289 QEKFRYIQWTNDPEMFAKWQKGETGYPIIDAAMRQLNQTGWMHNRLRMITASFLVKNLHI 348 Query: 368 DWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRH 427 DWR GE+YF L+D D A+N GGWQWAASTG D+VPYFRIFNP IQ K+FD G FI+ Sbjct: 349 DWRGGEKYFQKMLIDYDAANNIGGWQWAASTGTDAVPYFRIFNPIIQSKKFDNDGQFIKK 408 Query: 428 WLPELNNVPTQYIHAPHSWLDKND------LSLNYPLPIVDHKKACHHTLNQYYAAKK 479 ++PEL VP +YIH P+ + L NYP PIVD+ + TL Y A+K+ Sbjct: 409 YVPELKQVPQKYIHQPNIMNEALQTQYHVHLGENYPKPIVDYASSKKQTLFLYEASKE 466 >gi|158335578|ref|YP_001516750.1| deoxyribodipyrimidine photolyase [Acaryochloris marina MBIC11017] gi|158305819|gb|ABW27436.1| deoxyribodipyrimidine photolyase [Acaryochloris marina MBIC11017] Length = 484 Score = 375 bits (963), Expect = e-102, Method: Composition-based stats. Identities = 139/485 (28%), Positives = 226/485 (46%), Gaps = 31/485 (6%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGIS-----ARQSHFIYASL 65 L+W RNDLR+ D+ L+ A S+A VI + P Q+ Q ++ F+ S+ Sbjct: 4 LIWFRNDLRLHDHAPLHQAVR-SNADVIPCYCFDPRQFGQTPFGFPKTGPFRAQFLLESV 62 Query: 66 LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125 +++SL K Q L +V +++NR+ E+ + L Sbjct: 63 ADLRQSLRGKQSDLILRQG----HPETVLPELAQALKVETVYFNREVTAEEIEVENRLRS 118 Query: 126 RLQH-RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL 184 L + C F S L P + ++ +V+T FRK + ++ P ++ Sbjct: 119 ALADLGIECLRFWSSTLFHPEQLPFPIRELPEVFTQFRKQVEKSAKPKAPFPTP-QSLST 177 Query: 185 TGPVTPSNIPRFFDYPFQAIDP------MFPIGEQNALHILRKFCKE--KVYYYVEQRDI 236 + P +P+ D+ + +P F GE AL L+ + E ++ Y E R+ Sbjct: 178 LPDIAPGELPQLEDWGLSSPEPDARAMIQFSGGETAALARLQDYIWEQDRLKRYKETRNG 237 Query: 237 PAIQGTS-QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLM 295 S + SP+L++G +SPR ++K D + + + + ELIWR+++R + Sbjct: 238 MLQPNDSTKFSPWLALGCVSPRYIHQQVKTYEQDRV--KNNSTYWLIFELIWRDYFRFIC 295 Query: 296 AFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRM 355 A + + + W + + W+ G TGFP+IDA MR+L G+M NR R Sbjct: 296 AKHGKRVFRVSGLQGL-ALPWQDNRETFEKWQTGQTGFPLIDANMRELAATGFMSNRGRQ 354 Query: 356 ITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQG 415 ASFL K+L ++W++G E+F S L+D D+ SN G W +AA GND+ FR FN Q Sbjct: 355 NVASFLTKNLGLNWQMGAEWFESCLIDYDVCSNWGNWNYAAGVGNDARG-FRFFNIVKQA 413 Query: 416 KRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND------LSLNYPLPIVDHKKACHH 469 K +DPQG ++RHWLPEL +VP + P + +YP P+VD ++ Sbjct: 414 KDYDPQGDYVRHWLPELKDVPGGQVQTPWQLTALEQEMFGLTIGKDYPEPMVDLWQSAKV 473 Query: 470 TLNQY 474 Y Sbjct: 474 NEQIY 478 >gi|221197023|ref|ZP_03570070.1| deoxyribodipyrimidine photo-lyase (DNA photolyase)(Photoreactivating enzyme) [Burkholderia multivorans CGD2M] gi|221203696|ref|ZP_03576714.1| deoxyribodipyrimidine photo-lyase (DNA photolyase)(Photoreactivating enzyme) [Burkholderia multivorans CGD2] gi|221175862|gb|EEE08291.1| deoxyribodipyrimidine photo-lyase (DNA photolyase)(Photoreactivating enzyme) [Burkholderia multivorans CGD2] gi|221183577|gb|EEE15977.1| deoxyribodipyrimidine photo-lyase (DNA photolyase)(Photoreactivating enzyme) [Burkholderia multivorans CGD2M] Length = 476 Score = 375 bits (963), Expect = e-102, Method: Composition-based stats. Identities = 152/466 (32%), Positives = 229/466 (49%), Gaps = 20/466 (4%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 MSV +V R DLR++D+ AL AAC DA V+ V++ TP++ A +++ SL Sbjct: 1 MSVAIVLFRRDLRLSDHPALSAACARHDA-VLPVYVHTPDEDAIWSPGAASRWWLHHSLT 59 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 + ++L Q+G Q +D + + +++ R+YE + D L+ Sbjct: 60 SLDRALRQQGGRLLVMQ----NDPTIAVPALARAVGAQCVYWTRRYEPAAIACDAALKSA 115 Query: 127 LQ-HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185 L+ V +S+ ++ P + + Q Y+V+TPF + L +L P+PA R Sbjct: 116 LRAQGVAAQSYPGTLWQEPWKVATDSGQPYRVFTPFWRKLRTSLSDCH----PLPAARPR 171 Query: 186 GPVTPSNIPRFFDYPF-------QAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPA 238 +T + + + GE A L +F E + Y + RD PA Sbjct: 172 RWMTTDDSTAVEAIGLLPRVRWDAGLAEAWRPGEAGAWERLAEFVDEALAEYGDARDAPA 231 Query: 239 IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFY 298 GTS+LS +L G ++P Q L+E + + +L EL WREF HL+ + Sbjct: 232 RMGTSRLSAHLHYGEITPTQILRTLQERASRTTDRDRPDLEPFLRELGWREFAHHLLYHF 291 Query: 299 PSVCMGKPFIPWTEKIEW-NKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMIT 357 P F + W D+ L W+QG TG P++DA MRQL GWMHNR+RM+ Sbjct: 292 PHTTDAN-FDARFDTFAWAPDDNDDLARWQQGRTGIPLVDAGMRQLWQTGWMHNRVRMVV 350 Query: 358 ASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKR 417 ASFL K+L WR G +F L+D DLA+N GWQW A G D+ PYFR+FNP +Q + Sbjct: 351 ASFLTKNLRRHWRHGARWFWDTLVDADLANNTLGWQWVAGCGADAAPYFRVFNPYLQAAK 410 Query: 418 FDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDH 463 FDP +++ WLPEL+ +P +H P + YP +VD Sbjct: 411 FDPDAAYLKRWLPELSALPANVLHQPWKHPAALS-ACGYPASMVDL 455 >gi|237813094|ref|YP_002897545.1| deoxyribodipyrimidine photolyase [Burkholderia pseudomallei MSHR346] gi|237504878|gb|ACQ97196.1| deoxyribodipyrimidine photolyase [Burkholderia pseudomallei MSHR346] Length = 486 Score = 375 bits (963), Expect = e-102, Method: Composition-based stats. Identities = 154/494 (31%), Positives = 240/494 (48%), Gaps = 24/494 (4%) Query: 1 MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHF 60 M ++ +++ +VW R+DLR++D+ AL A S VI V++ + A + Sbjct: 1 MSSSISIAPAVVWFRDDLRVSDHPALMRAAE-SGRPVIGVYVFDERVGGRPLGGAARWW- 58 Query: 61 IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120 ++ SL ++L D + + S+ ++++R+Y + D Sbjct: 59 LHGSL----RALGAALAALGGTLALLRGDEHDTIVSFAAALGAGAVYWSRRYALAARAVD 114 Query: 121 KLLEKRLQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPV 179 ++ L + I ++F+ S+L PG ++N + Y+V++ + +A ++ V A P Sbjct: 115 NAVQTALDAQGIAVETFNASLLFEPGDLVNADGRPYQVFSAYWRAAMRRGVPAPPLGAPR 174 Query: 180 PAIRLTGPVTPSNIPRFFD-YPFQAIDPMFPIG--------EQNALHILRKFCKEKVYYY 230 P + D + P + G E A LR F ++ Y Sbjct: 175 RLNGGALPAALARQCVALDALGLEPTGPDWAGGLRDAWRFGEDAAHRRLRAFVDSRLGGY 234 Query: 231 VEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREF 290 +RD P I TS+LSPY+ G LS RQ W+ + + ++ +L+EL WREF Sbjct: 235 AAERDRPGIASTSRLSPYVRFGNLSARQLWHAAADAYAHGAAT-QADLDKFLSELGWREF 293 Query: 291 YRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMH 350 + +P + + + + W D L AW++G TG+P +DA MR+L GWMH Sbjct: 294 GWTQLHHFPDLPR-RNLRHTLDGMPWRDDPAALAAWRRGATGYPFVDAGMRELWATGWMH 352 Query: 351 NRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFN 410 NR+RM+ ASFLVK LL+DWR GE +F L+D D ASN WQW A G D+ PYFRIFN Sbjct: 353 NRVRMVCASFLVKHLLIDWRAGEAWFWDTLVDADAASNAANWQWVAGCGADAAPYFRIFN 412 Query: 411 PTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKN------DLSLNYPLPIVDHK 464 P QG++FDP G ++R W+PEL +P IH P + L YPLPIV H Sbjct: 413 PVAQGRKFDPDGAYVRRWVPELAGLPPATIHEPWAAPGAQLAAAGVRLGETYPLPIVAHD 472 Query: 465 KACHHTLNQYYAAK 478 A L+ + A + Sbjct: 473 AARRRALDAFGAIR 486 >gi|116071567|ref|ZP_01468835.1| Deoxyribodipyrimidine photolyase [Synechococcus sp. BL107] gi|116065190|gb|EAU70948.1| Deoxyribodipyrimidine photolyase [Synechococcus sp. BL107] Length = 477 Score = 375 bits (963), Expect = e-102, Method: Composition-based stats. Identities = 165/485 (34%), Positives = 231/485 (47%), Gaps = 22/485 (4%) Query: 6 AMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQH----GISARQSHFI 61 A S L W R DLR+ DN + AA S A V V++ P ++ + F+ Sbjct: 2 AASRVLFWHRRDLRLADNLGIQAAVEISPA-VTGVYVLDPALIHPPQALPPMAPARLWFL 60 Query: 62 YASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDK 121 SL+++Q+ G + D ++ L + + +NR E RD+ Sbjct: 61 LESLIELQQRWRAAGSRLLILEG----DPVQMLPPLAERLSAEAVVWNRDVEPYSRERDR 116 Query: 122 LLEKRLQHRV-ICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVP 180 + KRLQ D +L+ P + A Y+VY PF + + ++ P Sbjct: 117 QVAKRLQADGRQVVVDWDQLLIAPELLKTGAGDPYRVYGPFLRNWRGKVQAQQPTTIEAP 176 Query: 181 A--IRLTGPVTPSNIPRF---FDYPFQAIDPMFP-IGEQNALHILRKFCKEKVYYYVEQR 234 + + L + P P D+ FQ + GE AL L F + Y R Sbjct: 177 SGLVDLDSSLVPEGDPLAALRHDHGFQGTEICPCRPGESAALEQLTCFADGALSAYEPDR 236 Query: 235 DIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFS-WLNELIWREFYRH 293 + P + GTS LS LS+G LSPRQ W ++ + A + W EL WREFY+ Sbjct: 237 NFPNVVGTSYLSAALSVGTLSPRQAWCAAQQGRDHARSDEQRTAIAVWEQELGWREFYQQ 296 Query: 294 LMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRL 353 + +P + G P+ + W + +W+ G TG PIIDAAMRQLN GWMHNR Sbjct: 297 ALFHFPELADG-PYREQWRRFPWENNEAWFSSWRDGMTGMPIIDAAMRQLNESGWMHNRC 355 Query: 354 RMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTI 413 RMI ASFLVKDL+ DWR GE FM +DGDLA+NNGGWQW+AS+G D P RIFNP Sbjct: 356 RMIVASFLVKDLICDWRWGERAFMELEVDGDLAANNGGWQWSASSGMDPKP-LRIFNPAT 414 Query: 414 QGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQ 473 Q +FD G +IR WLPEL +V T+ + + YP P+++HK + Sbjct: 415 QATKFDADGDYIRRWLPELRHVNTKDLLTGEIGGLERR---GYPEPLINHKNQQALFKSL 471 Query: 474 YYAAK 478 Y + Sbjct: 472 YATIR 476 >gi|311255201|ref|XP_003126127.1| PREDICTED: cryptochrome-1-like [Sus scrofa] Length = 588 Score = 375 bits (963), Expect = e-102, Method: Composition-based stats. Identities = 126/501 (25%), Positives = 203/501 (40%), Gaps = 38/501 (7%) Query: 7 MSVH-LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASL 65 M V+ + W R LR+ DN AL +D + V+I P + + F+ L Sbjct: 1 MGVNAVHWFRKGLRLHDNPALKECIQGADT-IRCVYILDPWFAGSSNVGINRWRFLLQCL 59 Query: 66 LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125 + +L + + + + +TKL E RD ++K Sbjct: 60 EDLDANLRKLNSRLFVIRG----QPADVFPRLFKEWNITKLSIEYDSEPFGKERDAAIKK 115 Query: 126 RLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLV-QADLRSLPVPAI-- 182 + S L L+ +++ P Q L+ + + +PV I Sbjct: 116 LATEAGVEVIVRISHTLY---DLDKIIELNGGQPPLTYKRFQTLISKMEPLEIPVETITS 172 Query: 183 ----RLTGPVTPSNIPR-----FFDYPFQA---IDPMFPIGEQNALHILRKFCKEKVYYY 230 + T P++ + + + F ++P GE AL L + + K + Sbjct: 173 EVIEKCTTPLSDDHDEKYGVPSLEELGFDTDGLPSAVWPGGETEALTRLERHLERKAWVA 232 Query: 231 VEQRDIPAIQGT----SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELI 286 +R + LSPYL G LS R + +L + + + K S S +L+ Sbjct: 233 NFERPRMNANSLLASPTGLSPYLRFGCLSCRLFYFKLTDLYKKVK-KNSSPPLSLYGQLL 291 Query: 287 WREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTI 346 WREF+ P + P +I W+K+ L W +G TGFP IDA M QL Sbjct: 292 WREFFYTAATNNPRFDKMEG-NPICVQIPWDKNPEALAKWAEGRTGFPWIDAIMTQLRQE 350 Query: 347 GWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPY 405 GW+H+ R A FL + DL + W G + F LLD D + N G W W S + + Sbjct: 351 GWIHHLARHAVACFLTRGDLWISWEEGMKVFEELLLDADWSINAGSWMW-LSCSSFFQQF 409 Query: 406 FRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLD------KNDLSLNYPLP 459 F + P G+R DP G +IR +LP L P +YI+ P + + K + +NYP P Sbjct: 410 FHCYCPVGFGRRTDPNGDYIRRYLPVLRGFPAKYIYDPWNAPEGIQKVAKCLIGVNYPKP 469 Query: 460 IVDHKKACHHTLNQYYAAKKQ 480 +V+H +A + + +Q Sbjct: 470 MVNHAEASRLNIERMKQIYQQ 490 >gi|312903342|ref|ZP_07762522.1| FAD binding domain of DNA photolyase [Enterococcus faecalis TX0635] gi|310633218|gb|EFQ16501.1| FAD binding domain of DNA photolyase [Enterococcus faecalis TX0635] gi|315577672|gb|EFU89863.1| FAD binding domain of DNA photolyase [Enterococcus faecalis TX0630] Length = 477 Score = 375 bits (963), Expect = e-102, Method: Composition-based stats. Identities = 167/478 (34%), Positives = 242/478 (50%), Gaps = 24/478 (5%) Query: 11 LVWLRNDLRITDNKALYAACHNSDA-KVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69 ++W R DLR+ DNKAL A NS A ++I +F P+Q+ Q SA + F +ASL + Sbjct: 4 VMWFRRDLRLQDNKALAHALQNSAADELILLFQMNPQQFIQE--SANHNAF-FASLASFK 60 Query: 70 KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQ-RVTKLFYNRQYEINEVRRDKLLEKRLQ 128 + + Q + H + ++ + +++N +RD+ + + Sbjct: 61 ERIDQ-----EAHLQIMVGEPLDLFSRLKRKLPDWQAIYFNEDTCGFGAKRDQQAMRFFE 115 Query: 129 HRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187 I SF D+ L I + Y+V+TP+ + + + + Sbjct: 116 ENNIQSFSFQDAYLHGSEEIKKNDGSKYQVFTPYYNKWKEAPKETPIPVSYTAEKIFSAC 175 Query: 188 VTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSP 247 + P + + + + +GE+ A L F +K+ Y +RD P TS LS Sbjct: 176 LFPEEEAAYREQIARIPLKHYSVGEKTARRCLNTFIDQKLRSYENKRDFPYQDQTSHLST 235 Query: 248 YLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPF 307 +L G LS R W L + ++ EL WR+FY + + +P + Sbjct: 236 FLRTGELSIRTIWQEL------ASMPSSLSKETFKKELAWRDFYNMIYSTFPQQ-KEEAI 288 Query: 308 IPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLV 367 I+W D + W++G TG+PIIDAAMRQLN GWMHNRLRMITASFLVK+L + Sbjct: 289 QEKFRYIQWTNDPEMFAKWQKGETGYPIIDAAMRQLNQTGWMHNRLRMITASFLVKNLHI 348 Query: 368 DWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRH 427 DWR GE+YF L+D D A+N GGWQWAASTG D+VPYFRIFNP IQ K+FD G FI+ Sbjct: 349 DWRWGEKYFQKMLIDYDAANNIGGWQWAASTGTDAVPYFRIFNPIIQSKKFDNDGQFIKK 408 Query: 428 WLPELNNVPTQYIHAPHSWLDKND------LSLNYPLPIVDHKKACHHTLNQYYAAKK 479 ++PEL VP +YIH P+ + L NYP PIVD+ + TL Y A+K+ Sbjct: 409 YVPELKQVPQKYIHQPNIMNEALQTQYHVHLGENYPKPIVDYASSKKQTLFLYEASKE 466 >gi|170287804|gb|AAI61038.1| Unknown (protein for MGC:184712) [Xenopus (Silurana) tropicalis] Length = 618 Score = 375 bits (963), Expect = e-102, Method: Composition-based stats. Identities = 127/501 (25%), Positives = 204/501 (40%), Gaps = 38/501 (7%) Query: 7 MSVH-LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASL 65 M V+ + W R LR+ DN AL +D + V+I P + + F+ L Sbjct: 1 MGVNAVHWFRKGLRLHDNPALRECIQGADT-IRCVYILDPWFAGSSNVGINRWRFLLQCL 59 Query: 66 LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125 + +L + + + + ++TKL E RD ++K Sbjct: 60 EDLDANLRKLNSRLFVIRG----QPADVFPRLFKEWKITKLSIEYDSEPFGKERDAAIKK 115 Query: 126 RLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLV-QADLRSLPVPAI-- 182 + S L L+ +++ P Q L+ + + +PV I Sbjct: 116 LASEAGVEVIVRISHTLY---DLDKIIELNGGQPPLTYKRFQTLISKMEPLEIPVETITA 172 Query: 183 ----RLTGPVTPSNIPR-----FFDYPFQA---IDPMFPIGEQNALHILRKFCKEKVYYY 230 + T PV + + + F ++P GE AL L + + K + Sbjct: 173 EVMEKCTTPVLDDHDEKYGVPSLEELGFDTEGLPSAVWPGGETEALTRLERHLERKAWVA 232 Query: 231 VEQRDIPAIQG----TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELI 286 +R T+ LSPYL G LS R + +L + + + K S S +L+ Sbjct: 233 NFERPRMNANSLLASTTGLSPYLRFGCLSCRLFYFKLTDLYKKVK-KNSSPPLSLYGQLL 291 Query: 287 WREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTI 346 WREF+ P + P +I W+++ L W +G TGFP IDA M QL Sbjct: 292 WREFFYTAATNNPRFDKMEG-NPICVQIPWDRNPEALAKWAEGRTGFPWIDAIMTQLRQE 350 Query: 347 GWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPY 405 GW+H+ R A FL + DL + W G + F LLD D + N G W W S + + Sbjct: 351 GWIHHLARHAVACFLTRGDLWISWEEGMKVFEELLLDADWSVNAGSWMW-LSCSSFFQQF 409 Query: 406 FRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLD------KNDLSLNYPLP 459 F + P G+R DP G +IR +LP L P +YI+ P + + K + +NYP P Sbjct: 410 FHCYCPVGFGRRTDPNGDYIRRYLPILKGFPPKYIYDPWNAPETVQKVAKCIIGVNYPKP 469 Query: 460 IVDHKKACHHTLNQYYAAKKQ 480 +V+H +A + + +Q Sbjct: 470 MVNHAEASRLNIERMKQIYQQ 490 >gi|157427956|ref|NP_001098885.1| cryptochrome-1 [Bos taurus] gi|157278893|gb|AAI34487.1| CRY1 protein [Bos taurus] Length = 587 Score = 375 bits (963), Expect = e-102, Method: Composition-based stats. Identities = 126/501 (25%), Positives = 203/501 (40%), Gaps = 38/501 (7%) Query: 7 MSVH-LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASL 65 M V+ + W R LR+ DN AL +D + V+I P + + F+ L Sbjct: 1 MGVNAVHWFRKGLRLHDNPALKECIQGADT-IRCVYILDPWFAGSSNVGINRWRFLLQCL 59 Query: 66 LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125 + +L + + + + +TKL E RD ++K Sbjct: 60 EDLDANLRKLNSRLFVIRG----QPADVFPRLFKEWNITKLSIEYDSEPFGKERDAAIKK 115 Query: 126 RLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLV-QADLRSLPVPAI-- 182 + S L L+ +++ P Q L+ + + +PV I Sbjct: 116 LATEAGVEVIVRISHTLY---DLDKIIELNGGQPPLTYKRFQTLISKMEPLEIPVETITS 172 Query: 183 ----RLTGPVTPSNIPR-----FFDYPFQA---IDPMFPIGEQNALHILRKFCKEKVYYY 230 + T P++ + + + F ++P GE AL L + + K + Sbjct: 173 EVIEKCTTPLSDDHDEKYGVPSLEELGFDTDGLPSAVWPGGETEALTRLERHLERKAWVA 232 Query: 231 VEQRDIPAIQGT----SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELI 286 +R + LSPYL G LS R + +L + + + K S S +L+ Sbjct: 233 NFERPRMNANSLLASPTGLSPYLRFGCLSCRLFYFKLTDLYKKVK-KNSSPPLSLYGQLL 291 Query: 287 WREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTI 346 WREF+ P + P +I W+K+ L W +G TGFP IDA M QL Sbjct: 292 WREFFYTAATNNPRFDKMEG-NPICVQIPWDKNPEALAKWAEGRTGFPWIDAIMTQLRQE 350 Query: 347 GWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPY 405 GW+H+ R A FL + DL + W G + F LLD D + N G W W S + + Sbjct: 351 GWIHHLARHAVACFLTRGDLWISWEEGMKVFEELLLDADWSINAGSWMW-LSCSSFFQQF 409 Query: 406 FRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLD------KNDLSLNYPLP 459 F + P G+R DP G +IR +LP L P +YI+ P + + K + +NYP P Sbjct: 410 FHCYCPVGFGRRTDPNGDYIRRYLPVLRGFPAKYIYDPWNAPEGIQKVAKCLIGVNYPKP 469 Query: 460 IVDHKKACHHTLNQYYAAKKQ 480 +V+H +A + + +Q Sbjct: 470 MVNHAEASRLNIERMKQIYQQ 490 >gi|45383636|ref|NP_989576.1| cryptochrome-1 [Gallus gallus] gi|82104700|sp|Q8QG61|CRY1_CHICK RecName: Full=Cryptochrome-1 gi|19550963|gb|AAK61385.1| cryptochrome 1 [Gallus gallus] Length = 621 Score = 375 bits (963), Expect = e-101, Method: Composition-based stats. Identities = 124/498 (24%), Positives = 201/498 (40%), Gaps = 32/498 (6%) Query: 7 MSVH-LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASL 65 M V+ + W R LR+ DN AL +D V V+I P + + F+ L Sbjct: 1 MGVNAVHWFRKGLRLHDNPALRECIRGADT-VRCVYILDPWFAGSSNVGINRWRFLLQCL 59 Query: 66 LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125 + +L + + + + + KL E RD ++K Sbjct: 60 EDLDANLRKLNSRLFVIRG----QPADVFPRLFKEWSIAKLSIEYDSEPFGKERDAAIKK 115 Query: 126 RLQHRVICKSFD-DSVLLPPGSILN-HALQMYKVYTPFRKALIQN-LVQADLRSL-PVPA 181 + L I+ + Q Y F+ + + ++ + ++ P Sbjct: 116 LASEAGVEVIVRISHTLYDLDKIIELNGGQPPLTYKRFQTLISRMEPLEMPVETITPEVM 175 Query: 182 IRLTGPVTPSNIPR-----FFDYPFQA---IDPMFPIGEQNALHILRKFCKEKVYYYVEQ 233 + T PV+ + + + F ++P GE AL L + + K + + Sbjct: 176 QKCTTPVSDDHDEKYGVPSLEELGFDTDGLPSAVWPGGETEALTRLERHLERKAWVANFE 235 Query: 234 RDIPAIQGT----SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWRE 289 R + LSPYL G LS R + +L + + + K S S +L+WRE Sbjct: 236 RPRMNANSLLASPTGLSPYLRFGCLSCRLFYFKLTDLYKKVK-KNSSPPLSLYGQLLWRE 294 Query: 290 FYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWM 349 F+ P + P +I W+K+ L W +G TGFP IDA M QL GW+ Sbjct: 295 FFYTAATNNPRFDKMEG-NPICVQIPWDKNPEALAKWAEGRTGFPWIDAIMTQLRQEGWI 353 Query: 350 HNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRI 408 H+ R A FL + DL + W G + F LLD D + N G W W S + +F Sbjct: 354 HHLARHAVACFLTRGDLWISWEEGMKVFEELLLDADWSVNAGSWMW-LSCSSFFQQFFHC 412 Query: 409 FNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLD------KNDLSLNYPLPIVD 462 + P G+R DP G +IR +LP L P +YI+ P + + K + +NYP P+V+ Sbjct: 413 YCPVGFGRRTDPNGDYIRRYLPVLRGFPAKYIYDPWNAPESVQKAAKCVIGVNYPKPMVN 472 Query: 463 HKKACHHTLNQYYAAKKQ 480 H +A + + +Q Sbjct: 473 HAEASRLNIERMKQIYQQ 490 >gi|7267534|emb|CAB78016.1| Arabidopsis thaliana flavin-type blue-light photoreceptor (SW:Q43125) (Pfam: PF00875, Score=765.2, E=2.6e-226, N=1) Length = 716 Score = 375 bits (963), Expect = e-101, Method: Composition-based stats. Identities = 138/490 (28%), Positives = 226/490 (46%), Gaps = 25/490 (5%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 +VW R DLR+ DN AL AA VIA+F+ PE+ + ++ SL Q+ Sbjct: 15 IVWFRRDLRVEDNPALAAAVRAG--PVIALFVWAPEEEGHYHPGRVSRWWLKNSLAQLDS 72 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL-QH 129 SL G + + DS+ L +++F+N Y+ + RD + L Sbjct: 73 SLRSLGTCLITKRST---DSVASLLDVVKSTGASQIFFNHLYDPLSLVRDHRAKDVLTAQ 129 Query: 130 RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189 + +SF+ +L P + + + + ++ F + + + LP I Sbjct: 130 GIAVRSFNADLLYEPWEVTDELGRPFSMFAAFWERCLSMPYDPESPLLPPKKIISGDVSK 189 Query: 190 PSNIPRFFDYPFQA-----IDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244 P F+ + + + G N L F + Y + R TS Sbjct: 190 CVADPLVFEDDSEKGSNALLARAWSPGWSNGDKALTTFINGPLLEYSKNRRKADSATTSF 249 Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFS----WLNELIWREFYRHLMAFYPS 300 LSP+L G +S R+ ++ ++ + V + +L + RE+ R++ +P Sbjct: 250 LSPHLHFGEVSVRKVFHLVRIKQVAWANEGNEAGEESVNLFLKSIGLREYSRYISFNHP- 308 Query: 301 VCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASF 360 +P + + W D + +AW+QG TG+P++DA MR+L GW+H+R+R++ +SF Sbjct: 309 YSHERPLLGHLKFFPWAVDENYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSF 368 Query: 361 LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDP 420 VK L + WR G +YF LLD DL S+ GWQ+ T DS + RI NP +G +FDP Sbjct: 369 FVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYITGTLPDSREFDRIDNPQFEGYKFDP 428 Query: 421 QGTFIRHWLPELNNVPTQYIHAPHSWLDKN------DLSLNYPLPIVDHKKACHH---TL 471 G ++R WLPEL+ +PT +IH P + + +L NYPLPIV +A L Sbjct: 429 NGEYVRRWLPELSRLPTDWIHHPWNAPESVLQAAGIELGSNYPLPIVGLDEAKARLHEAL 488 Query: 472 NQYYAAKKQS 481 +Q + + S Sbjct: 489 SQMWQLEAAS 498 >gi|57233431|gb|AAW48291.1| cryptochrome-1b [Erithacus rubecula] Length = 587 Score = 375 bits (963), Expect = e-101, Method: Composition-based stats. Identities = 124/498 (24%), Positives = 199/498 (39%), Gaps = 32/498 (6%) Query: 7 MSVH-LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASL 65 M V+ + W R LR+ DN AL +D V V+I P + + F+ L Sbjct: 1 MGVNAVHWFRKGLRLHDNPALRECIRGADT-VRCVYILDPWFAGSSNVGINRWRFLLQCL 59 Query: 66 LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125 + +L + + + + + KL E RD ++K Sbjct: 60 EDLDANLRKLNSRLFVIRG----QPADVFPRLFKEWNIAKLSIEYDSEPFGKERDAAIKK 115 Query: 126 RLQHRVICKSFD-DSVLLPPGSILN-HALQMYKVYTPFRKALIQN-LVQADLRSL-PVPA 181 + L I+ + Q Y F+ + + ++ + ++ P Sbjct: 116 LASEAGVEVIVRISHTLYDLDKIIELNGGQPPLTYKRFQTLISRMEPLEMPVETITPEVM 175 Query: 182 IRLTGPVTPSNIPR-----FFDYPFQA---IDPMFPIGEQNALHILRKFCKEKVYYYVEQ 233 + T PV + + + F ++P GE AL L + + K + Sbjct: 176 KKCTTPVFDDHDEKYGVPSLEELGFDTDGLPSAVWPGGETEALTRLERHLERKASVANFE 235 Query: 234 RDIPAIQGT----SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWRE 289 R + LSPYL G LS R + +L + + + K S S +L+WRE Sbjct: 236 RPRMNANSLLASPTGLSPYLRFGCLSCRLFYFKLTDLYKKVK-KNSSPPLSLYGQLLWRE 294 Query: 290 FYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWM 349 F+ P + P +I W+K+ L W +G TGFP IDA M QL GW+ Sbjct: 295 FFYTAATNNPRFDKMEG-NPICVQIPWDKNPEALAKWAEGRTGFPWIDAIMTQLRQEGWI 353 Query: 350 HNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRI 408 H+ R A FL + DL + W G + F LLD D + N G W W S + +F Sbjct: 354 HHLARHAVACFLTRGDLWISWEEGMKVFEELLLDADWSVNAGSWMW-LSCSSFFQQFFHC 412 Query: 409 FNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLD------KNDLSLNYPLPIVD 462 + P G+R DP G +IR +LP L P +YI+ P + + K + +NYP P+V+ Sbjct: 413 YCPVGFGRRTDPNGDYIRRYLPVLRGFPAKYIYDPWNAPESIQKAAKCIIGVNYPKPMVN 472 Query: 463 HKKACHHTLNQYYAAKKQ 480 H +A + + +Q Sbjct: 473 HAEASRLNIERMKQIYQQ 490 >gi|291389942|ref|XP_002711467.1| PREDICTED: cryptochrome 1 (photolyase-like) [Oryctolagus cuniculus] Length = 587 Score = 375 bits (962), Expect = e-101, Method: Composition-based stats. Identities = 126/501 (25%), Positives = 203/501 (40%), Gaps = 38/501 (7%) Query: 7 MSVH-LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASL 65 M V+ + W R LR+ DN AL +D + V+I P + + F+ L Sbjct: 1 MGVNAVHWFRKGLRLHDNPALKECIQGADT-IRCVYILDPWFAGSSNVGINRWRFLLQCL 59 Query: 66 LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125 + +L + + + + +T+L E RD ++K Sbjct: 60 EDLDANLRKLNSRLFVIRG----QPADVFPRLFKEWNITRLSIEYDSEPFGKERDAAIKK 115 Query: 126 RLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLV-QADLRSLPVPAI-- 182 + S L L+ +++ P Q L+ + + +PV I Sbjct: 116 LASEAGVEVIVRISHTLY---DLDKIIELNGGQPPLTYKRFQTLISKMEPLEIPVETITS 172 Query: 183 ----RLTGPVTPSNIPR-----FFDYPFQA---IDPMFPIGEQNALHILRKFCKEKVYYY 230 + T PV+ + + + F ++P GE AL L + + K + Sbjct: 173 DVIEKCTTPVSDDHDEKYGVPSLEELGFDTDGLSSAVWPGGETEALTRLERHLERKAWVA 232 Query: 231 VEQRDIPAIQGT----SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELI 286 +R + LSPYL G LS R + +L + + + K S S +L+ Sbjct: 233 NFERPRMNANSLLASPTGLSPYLRFGCLSCRLFYFKLTDLYKKVK-KNSSPPLSLYGQLL 291 Query: 287 WREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTI 346 WREF+ P + P +I W+K+ L W +G TGFP IDA M QL Sbjct: 292 WREFFYTAATNNPRFDKMEG-NPICVQIPWDKNPEALAKWAEGQTGFPWIDAIMTQLRQE 350 Query: 347 GWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPY 405 GW+H+ R A FL + DL + W G + F LLD D + N G W W S + + Sbjct: 351 GWIHHLARHAVACFLTRGDLWISWEEGMKVFEELLLDADWSINAGSWMW-LSCSSFFQQF 409 Query: 406 FRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLD------KNDLSLNYPLP 459 F + P G+R DP G +IR +LP L P +YI+ P + + K + +NYP P Sbjct: 410 FHCYCPVGFGRRTDPNGDYIRRYLPVLRGFPAKYIYDPWNAPEGIQKVAKCLIGINYPKP 469 Query: 460 IVDHKKACHHTLNQYYAAKKQ 480 +V+H +A + + +Q Sbjct: 470 MVNHAEASRLNIERMKQIYQQ 490 >gi|307278038|ref|ZP_07559122.1| FAD binding domain of DNA photolyase [Enterococcus faecalis TX0860] gi|306505435|gb|EFM74621.1| FAD binding domain of DNA photolyase [Enterococcus faecalis TX0860] Length = 477 Score = 375 bits (962), Expect = e-101, Method: Composition-based stats. Identities = 167/478 (34%), Positives = 242/478 (50%), Gaps = 24/478 (5%) Query: 11 LVWLRNDLRITDNKALYAACHNSDA-KVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69 ++W R DLR+ DNKAL A NS A ++I +F P+Q+ Q SA + F +ASL + Sbjct: 4 VMWFRRDLRLQDNKALAHALQNSAADELILLFQMNPQQFIQE--SANHNAF-FASLASFK 60 Query: 70 KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQ-RVTKLFYNRQYEINEVRRDKLLEKRLQ 128 + + Q + H + ++ + +++N +RD+ + + Sbjct: 61 ERIDQ-----EAHLQIMVGEPLDLFSRLKRKLPDWQAIYFNEDTCGFGAKRDQQAMRFFE 115 Query: 129 HRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187 I SF D+ L I + Y+V+TP+ + + + + Sbjct: 116 ENNIQSFSFQDAYLHGSEEIKKNDGSKYQVFTPYYNKWKEAPKETPIPVSYTAEKIFSAC 175 Query: 188 VTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSP 247 + P + + + + +GE+ A L F +K+ Y +RD P TS LS Sbjct: 176 LFPEEEAAYREQIARIPLKHYSVGEKTARRCLNTFIDQKLRSYENKRDFPYQDQTSHLST 235 Query: 248 YLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPF 307 +L G LS R W L + ++ EL WR+FY + + +P + Sbjct: 236 FLRTGELSIRTIWQEL------ASMPSSLSKETFKKELAWRDFYNMIYSTFPQQ-KEEAI 288 Query: 308 IPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLV 367 I+W D + W++G TG+PIIDAAMRQLN GWMHNRLRMITASFLVK+L + Sbjct: 289 QEKFRYIQWTNDPEMFAKWQKGETGYPIIDAAMRQLNQTGWMHNRLRMITASFLVKNLHI 348 Query: 368 DWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRH 427 DWR GE+YF L+D D A+N GGWQWAASTG D+VPYFRIFNP IQ K+FD G FI+ Sbjct: 349 DWRWGEKYFQKMLIDYDAANNIGGWQWAASTGTDAVPYFRIFNPIIQSKKFDNDGQFIKK 408 Query: 428 WLPELNNVPTQYIHAPHSWLDKND------LSLNYPLPIVDHKKACHHTLNQYYAAKK 479 ++PEL VP +YIH P+ + L NYP PIVD+ + TL Y A+K+ Sbjct: 409 YVPELKQVPQKYIHQPNLMNEALQTQYHVHLGENYPKPIVDYASSKKQTLFLYEASKE 466 >gi|217421243|ref|ZP_03452748.1| deoxyribodipyrimidine photolyase [Burkholderia pseudomallei 576] gi|217396655|gb|EEC36672.1| deoxyribodipyrimidine photolyase [Burkholderia pseudomallei 576] Length = 486 Score = 375 bits (962), Expect = e-101, Method: Composition-based stats. Identities = 155/494 (31%), Positives = 240/494 (48%), Gaps = 24/494 (4%) Query: 1 MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHF 60 M ++ +++ +VW R+DLR++D+ AL A S VI V++ + A + Sbjct: 1 MSSSISIAPAVVWFRDDLRVSDHPALMRAAE-SGRPVIGVYVFDERAGGRPLGGAARWW- 58 Query: 61 IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120 ++ SL ++L D + + S+ ++++R+Y + D Sbjct: 59 LHGSL----RALGAALAALGGTLALLRGDEHDTIVSFAAALGAGAVYWSRRYALAARAVD 114 Query: 121 KLLEKRLQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPV 179 ++ L R I ++F+ S+L PG ++N + Y+V++ + +A ++ V A P Sbjct: 115 NAVQTALDARGIAVETFNASLLFEPGDLVNADGRPYQVFSAYWRAAMRRGVPAPPLGAPR 174 Query: 180 PAIRLTGPVTPSNIPRFFD-YPFQAIDPMFPIG--------EQNALHILRKFCKEKVYYY 230 P + D + P + G E A LR F ++ Y Sbjct: 175 RLNGGALPAALARQCVALDALGLEPTGPDWAGGLRDAWRFGEDAAHRRLRAFVDSRLGGY 234 Query: 231 VEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREF 290 +RD P I TS+LSPY+ G LS RQ W+ + + ++ +L+EL WREF Sbjct: 235 AAERDRPGIASTSRLSPYVRFGNLSARQLWHAAADAYAHGAAT-QADLDKFLSELGWREF 293 Query: 291 YRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMH 350 + +P + + + + W D L AW++G TG+P +DA MR+L GWMH Sbjct: 294 GWTQLHHFPDLPR-RNLRHTLDGMPWRDDPAALAAWRRGATGYPFVDAGMRELWATGWMH 352 Query: 351 NRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFN 410 NR+RM+ ASFLVK LL+DWR GE +F L+D D ASN WQW A G D+ PYFRIFN Sbjct: 353 NRVRMVCASFLVKHLLIDWRAGEAWFWDTLVDADAASNAANWQWVAGCGADAAPYFRIFN 412 Query: 411 PTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKN------DLSLNYPLPIVDHK 464 P QG++FDP G ++R W+PEL +P IH P + L YPLPIV H Sbjct: 413 PVAQGRKFDPDGAYVRRWVPELAGLPPATIHEPWAAPGAQLAAAGVRLGETYPLPIVAHD 472 Query: 465 KACHHTLNQYYAAK 478 A L+ + A + Sbjct: 473 AARRRALDAFGAIR 486 >gi|326403807|ref|YP_004283889.1| deoxyribodipyrimidine photo-lyase [Acidiphilium multivorum AIU301] gi|325050669|dbj|BAJ81007.1| deoxyribodipyrimidine photo-lyase [Acidiphilium multivorum AIU301] Length = 471 Score = 375 bits (962), Expect = e-101, Method: Composition-based stats. Identities = 152/490 (31%), Positives = 224/490 (45%), Gaps = 35/490 (7%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M+ L+WLRNDLR+ DN AL AA + V+ VF+ P +++ SL Sbjct: 1 MATTLLWLRNDLRLADNPALAAAIEEGN--VLPVFVLDPAAE----TGGASRWWLHHSLA 54 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 ++ + +G + D+ + + + + R +E D+ + Sbjct: 55 ALEADFAARGGRLVLRRG----DAAAIVPALAREIGAVAVHAGRAHEPWLREADRRVAAA 110 Query: 127 LQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185 LQ I +++ P I +Y VYTPF +A A Sbjct: 111 LQEAGIGFHRHRSALMFGPERITTRTGGVYGVYTPFSRACFDAFAPRPPIP----APARL 166 Query: 186 GPVTPSNIPRFFDYPFQAIDPMFPIG--------EQNALHILRKFCKEKVYYYVEQRDIP 237 R D+ + P + G E A L F + Y QRD+P Sbjct: 167 AAAGDPGGDRLGDWGLLPVKPDWAGGLRASWTPGEAGARARLDAFLADGFGEYDRQRDLP 226 Query: 238 AIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAF 297 + GTS LSP+L G ++ W + ++L ELIWREF +L+ Sbjct: 227 GVAGTSGLSPHLHWGEIAIDAVWRAAVAA-----PGRDAARQTFLKELIWREFAAYLLWH 281 Query: 298 YPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMIT 357 P + +P + W + + L AW+ G TG PI+DA MRQL GWMHNR+RMI Sbjct: 282 TPDLAT-RPMKAQFAAMPWRESAADLAAWQHGRTGVPIVDAGMRQLWQTGWMHNRVRMIV 340 Query: 358 ASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKR 417 ASFLVK LL+ W+ GE +F L+D D ASN WQW A +G D+ PYFRIFNP +QG++ Sbjct: 341 ASFLVKHLLLPWQAGERWFHDCLVDADAASNAASWQWVAGSGADAAPYFRIFNPVLQGRK 400 Query: 418 FDPQGTFIRHWLPELNNVPTQYIHAPHSWLD------KNDLSLNYPLPIVDHKKACHHTL 471 FDP G ++R ++PE+ N+P +Y+HAP + L +YP PIVD + L Sbjct: 401 FDPDGAYVRRFVPEIANLPDKYLHAPWEAPEIVLRGAGVRLGASYPRPIVDLAEGRERAL 460 Query: 472 NQYYAAKKQS 481 + A ++ Sbjct: 461 AAFAAISGKA 470 >gi|118572249|sp|Q5IZC5|CRY1_ERIRU RecName: Full=Cryptochrome-1 gi|57233429|gb|AAW48290.1| cryptochrome-1a [Erithacus rubecula] Length = 620 Score = 375 bits (962), Expect = e-101, Method: Composition-based stats. Identities = 124/498 (24%), Positives = 199/498 (39%), Gaps = 32/498 (6%) Query: 7 MSVH-LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASL 65 M V+ + W R LR+ DN AL +D V V+I P + + F+ L Sbjct: 1 MGVNAVHWFRKGLRLHDNPALRECIRGADT-VRCVYILDPWFAGSSNVGINRWRFLLQCL 59 Query: 66 LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125 + +L + + + + + KL E RD ++K Sbjct: 60 EDLDANLRKLNSRLFVIRG----QPADVFPRLFKEWNIAKLSIEYDSEPFGKERDAAIKK 115 Query: 126 RLQHRVICKSFD-DSVLLPPGSILN-HALQMYKVYTPFRKALIQN-LVQADLRSL-PVPA 181 + L I+ + Q Y F+ + + ++ + ++ P Sbjct: 116 LASEAGVEVIVRISHTLYDLDKIIELNGGQPPLTYKRFQTLISRMEPLEMPVETITPEVM 175 Query: 182 IRLTGPVTPSNIPR-----FFDYPFQA---IDPMFPIGEQNALHILRKFCKEKVYYYVEQ 233 + T PV + + + F ++P GE AL L + + K + Sbjct: 176 KKCTTPVFDDHDEKYGVPSLEELGFDTDGLPSAVWPGGETEALTRLERHLERKASVANFE 235 Query: 234 RDIPAIQGT----SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWRE 289 R + LSPYL G LS R + +L + + + K S S +L+WRE Sbjct: 236 RPRMNANSLLASPTGLSPYLRFGCLSCRLFYFKLTDLYKKVK-KNSSPPLSLYGQLLWRE 294 Query: 290 FYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWM 349 F+ P + P +I W+K+ L W +G TGFP IDA M QL GW+ Sbjct: 295 FFYTAATNNPRFDKMEG-NPICVQIPWDKNPEALAKWAEGRTGFPWIDAIMTQLRQEGWI 353 Query: 350 HNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRI 408 H+ R A FL + DL + W G + F LLD D + N G W W S + +F Sbjct: 354 HHLARHAVACFLTRGDLWISWEEGMKVFEELLLDADWSVNAGSWMW-LSCSSFFQQFFHC 412 Query: 409 FNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLD------KNDLSLNYPLPIVD 462 + P G+R DP G +IR +LP L P +YI+ P + + K + +NYP P+V+ Sbjct: 413 YCPVGFGRRTDPNGDYIRRYLPVLRGFPAKYIYDPWNAPESIQKAAKCIIGVNYPKPMVN 472 Query: 463 HKKACHHTLNQYYAAKKQ 480 H +A + + +Q Sbjct: 473 HAEASRLNIERMKQIYQQ 490 >gi|53719958|ref|YP_108944.1| putative DNA photolyase [Burkholderia pseudomallei K96243] gi|126453768|ref|YP_001066985.1| deoxyribodipyrimidine photolyase [Burkholderia pseudomallei 1106a] gi|134277838|ref|ZP_01764553.1| deoxyribodipyrimidine photolyase [Burkholderia pseudomallei 305] gi|226200012|ref|ZP_03795562.1| deoxyribodipyrimidine photolyase [Burkholderia pseudomallei Pakistan 9] gi|242315962|ref|ZP_04814978.1| deoxyribodipyrimidine photolyase [Burkholderia pseudomallei 1106b] gi|254195952|ref|ZP_04902378.1| deoxyribodipyrimidine photolyase [Burkholderia pseudomallei S13] gi|254296960|ref|ZP_04964413.1| deoxyribodipyrimidine photolyase [Burkholderia pseudomallei 406e] gi|52210372|emb|CAH36352.1| putative DNA photolyase [Burkholderia pseudomallei K96243] gi|126227410|gb|ABN90950.1| deoxyribodipyrimidine photolyase [Burkholderia pseudomallei 1106a] gi|134251488|gb|EBA51567.1| deoxyribodipyrimidine photolyase [Burkholderia pseudomallei 305] gi|157807746|gb|EDO84916.1| deoxyribodipyrimidine photolyase [Burkholderia pseudomallei 406e] gi|169652697|gb|EDS85390.1| deoxyribodipyrimidine photolyase [Burkholderia pseudomallei S13] gi|225928068|gb|EEH24105.1| deoxyribodipyrimidine photolyase [Burkholderia pseudomallei Pakistan 9] gi|242139201|gb|EES25603.1| deoxyribodipyrimidine photolyase [Burkholderia pseudomallei 1106b] Length = 486 Score = 375 bits (962), Expect = e-101, Method: Composition-based stats. Identities = 154/494 (31%), Positives = 240/494 (48%), Gaps = 24/494 (4%) Query: 1 MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHF 60 M ++ +++ +VW R+DLR++D+ AL A S VI V++ + A + Sbjct: 1 MSSSISIAPAVVWFRDDLRVSDHPALMRAAE-SGRPVIGVYVFDERAGGRPLGGAARWW- 58 Query: 61 IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120 ++ SL ++L D + + S+ ++++R+Y + D Sbjct: 59 LHGSL----RALGAALAALGGTLALLRGDEHDTIVSFAAALGAGAVYWSRRYALAARAVD 114 Query: 121 KLLEKRLQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPV 179 ++ L + I ++F+ S+L PG ++N + Y+V++ + +A ++ V A P Sbjct: 115 NAVQTALDAQGIAVETFNASLLFEPGDLVNADGRPYQVFSAYWRAAMRRGVPAPPLGAPR 174 Query: 180 PAIRLTGPVTPSNIPRFFD-YPFQAIDPMFPIG--------EQNALHILRKFCKEKVYYY 230 P + D + P + G E A LR F ++ Y Sbjct: 175 RLNGGALPAALARQCVALDALGLEPTGPDWAGGLRDAWRFGEDAAHRRLRAFVDSRLGGY 234 Query: 231 VEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREF 290 +RD P I TS+LSPY+ G LS RQ W+ + + ++ +L+EL WREF Sbjct: 235 AAERDRPGIASTSRLSPYVRFGNLSARQLWHAAADAYAHGAAT-QADLDKFLSELGWREF 293 Query: 291 YRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMH 350 + +P + + + + W D L AW++G TG+P +DA MR+L GWMH Sbjct: 294 GWTQLHHFPDLPR-RNLRHTLDGMPWRDDPAALAAWRRGATGYPFVDAGMRELWATGWMH 352 Query: 351 NRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFN 410 NR+RM+ ASFLVK LL+DWR GE +F L+D D ASN WQW A G D+ PYFRIFN Sbjct: 353 NRVRMVCASFLVKHLLIDWRAGEAWFWDTLVDADAASNAANWQWVAGCGADAAPYFRIFN 412 Query: 411 PTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKN------DLSLNYPLPIVDHK 464 P QG++FDP G ++R W+PEL +P IH P + L YPLPIV H Sbjct: 413 PVAQGRKFDPDGAYVRRWVPELAGLPPATIHEPWAAPGAQLAAAGVRLGETYPLPIVAHD 472 Query: 465 KACHHTLNQYYAAK 478 A L+ + A + Sbjct: 473 AARRRALDAFGAIR 486 >gi|296212792|ref|XP_002752992.1| PREDICTED: cryptochrome-1 [Callithrix jacchus] Length = 586 Score = 375 bits (962), Expect = e-101, Method: Composition-based stats. Identities = 126/501 (25%), Positives = 203/501 (40%), Gaps = 38/501 (7%) Query: 7 MSVH-LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASL 65 M V+ + W R LR+ DN AL +D + V+I P + + F+ L Sbjct: 1 MGVNAVHWFRKGLRLHDNPALKECIQGADT-IRCVYILDPWFAGSSNVGINRWRFLLQCL 59 Query: 66 LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125 + +L + + + + +TKL E RD ++K Sbjct: 60 EDLDANLRKLNSRLFVIRG----QPADVFPRLFKEWNITKLSIEYDSEPFGKERDAAIKK 115 Query: 126 RLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLV-QADLRSLPVPAI-- 182 + S L L+ +++ P Q L+ + + +PV I Sbjct: 116 LATEAGVEVIVRISHTLY---DLDKIIELNGGQPPLTYKRFQTLISKMEPLEIPVETITS 172 Query: 183 ----RLTGPVTPSNIPR-----FFDYPFQA---IDPMFPIGEQNALHILRKFCKEKVYYY 230 + T P++ + + + F ++P GE AL L + + K + Sbjct: 173 EVIEKCTTPLSDDHDEKYGVPSLEELGFDTDGLSSAVWPGGETEALTRLERHLERKAWVA 232 Query: 231 VEQRDIPAIQGT----SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELI 286 +R + LSPYL G LS R + +L + + + K S S +L+ Sbjct: 233 NFERPRMNANSLLASPTGLSPYLRFGCLSCRLFYFKLTDLYKKVK-KNSSPPLSLYGQLL 291 Query: 287 WREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTI 346 WREF+ P + P +I W+K+ L W +G TGFP IDA M QL Sbjct: 292 WREFFYTAATNNPRFDKMEG-NPICVQIPWDKNPEALAKWAEGRTGFPWIDAIMTQLRQE 350 Query: 347 GWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPY 405 GW+H+ R A FL + DL + W G + F LLD D + N G W W S + + Sbjct: 351 GWIHHLARHAVACFLTRGDLWISWEEGMKVFEELLLDADWSINAGSWMW-LSCSSFFQQF 409 Query: 406 FRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLD------KNDLSLNYPLP 459 F + P G+R DP G +IR +LP L P +YI+ P + + K + +NYP P Sbjct: 410 FHCYCPVGFGRRTDPNGDYIRRYLPVLRGFPAKYIYDPWNAPEGIQKVAKCLIGVNYPKP 469 Query: 460 IVDHKKACHHTLNQYYAAKKQ 480 +V+H +A + + +Q Sbjct: 470 MVNHAEASRLNIERMKQIYQQ 490 >gi|315169001|gb|EFU13018.1| FAD binding domain of DNA photolyase [Enterococcus faecalis TX1341] Length = 477 Score = 374 bits (961), Expect = e-101, Method: Composition-based stats. Identities = 168/478 (35%), Positives = 243/478 (50%), Gaps = 24/478 (5%) Query: 11 LVWLRNDLRITDNKALYAACHNSDA-KVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69 ++W R DLR+ DNKAL A NS A ++I +F P+Q+ Q SA + F +ASL + Sbjct: 4 VMWFRRDLRLQDNKALAHALQNSAADELILLFQMNPQQFIQE--SANHNAF-FASLASFK 60 Query: 70 KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQ-RVTKLFYNRQYEINEVRRDKLLEKRLQ 128 + + Q + H + ++ + +++N +RD+ + + Sbjct: 61 ERIDQ-----EAHLQIMVGEPLDLFSRLKRKLPDWQAIYFNEDICGFGAKRDQQAMRFFE 115 Query: 129 HRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187 I SF D+ L I + Y+V+TP+ + + + + Sbjct: 116 ENNIQSFSFQDAYLHGSEEIKKNDGSKYQVFTPYYNKWKEAPKETPIPVSYTAEKIFSAC 175 Query: 188 VTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSP 247 + P + + + + +GE+ A L F +K+ Y +RD P TS LS Sbjct: 176 LFPEEEAAYREQIARIPLTHYSVGEETARRRLNTFIDQKLQSYENKRDFPYQDQTSHLST 235 Query: 248 YLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPF 307 +L G LS R W L L + ++ EL WR+FY + + +P + Sbjct: 236 FLRTGELSIRTIWQELASASSSLSKE------TFKKELAWRDFYNMIYSTFPQQ-KEEAI 288 Query: 308 IPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLV 367 I+W D + W++G TG+PIIDAAMRQLN GWMHNRLRMITASFLVK+L + Sbjct: 289 QEKFRYIQWTNDPEMFAKWQKGETGYPIIDAAMRQLNQTGWMHNRLRMITASFLVKNLHI 348 Query: 368 DWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRH 427 DWR GE+YF L+D D A+N GGWQWAASTG D+VPYFRIFNP IQ K+FD G FI+ Sbjct: 349 DWRWGEKYFQKMLIDYDAANNIGGWQWAASTGTDAVPYFRIFNPIIQSKKFDNDGQFIKK 408 Query: 428 WLPELNNVPTQYIHAPHSWLDKND------LSLNYPLPIVDHKKACHHTLNQYYAAKK 479 ++PEL VP +YIH P+ + L NYP PIVD+ + TL Y A+K+ Sbjct: 409 YVPELKQVPQKYIHQPNLMNEALQTQYHVHLGENYPKPIVDYASSKKQTLFLYEASKE 466 >gi|15790367|ref|NP_280191.1| photolyase/cryptochrome [Halobacterium sp. NRC-1] gi|10580849|gb|AAG19671.1| photolyase/cryptochrome [Halobacterium sp. NRC-1] Length = 489 Score = 374 bits (961), Expect = e-101, Method: Composition-based stats. Identities = 161/493 (32%), Positives = 231/493 (46%), Gaps = 22/493 (4%) Query: 1 MKATTAMSVHLVWLRNDLRITDNKALYAAC--------HNSDAKVIAVFIATPEQWRQHG 52 M A + L W R DLR TDN+ L AA + V AVF E Sbjct: 1 MPAAQPPGMQLFWHRRDLRTTDNRGLAAAAPGVTAVDGGHDQGPVAAVFCFDDEVLA--H 58 Query: 53 ISARQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQY 112 + + F+ +L +++ G D L + T++ +N Y Sbjct: 59 AAPPRVAFMLDALAALRERYRDLGSDLIVRHG----DPAAVLPAVANDLDATRVVWNHDY 114 Query: 113 EINEVRRDKLLEKRLQHRVICK-SFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLV- 170 RD + L + F D+V PG I +A Y VYT F + Sbjct: 115 SGLATDRDAGVRDALDAAGVAHAQFHDAVHHRPGEIRTNAGDPYSVYTYFWRKWQDREKN 174 Query: 171 QADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFP-IGEQNALHILRKFCK-EKVY 228 P T S +P + F + P G A +L F + +Y Sbjct: 175 PPAPEPEPADLAADTALADTSPLPSVQELGFAEPEAAVPDAGTAAARSLLDAFRESGDIY 234 Query: 229 YYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPK-SGAFSWLNELIW 287 Y ++RD P + TS+LSP+L G + R + + D + +++ +L W Sbjct: 235 RYEDRRDYPHEEPTSRLSPHLKFGTIGIRTVYEAARAAKSDADTDDERENVAAFIGQLAW 294 Query: 288 REFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIG 347 REFY ++ F +V + + F + IEW D LQAWK G TG+PI+DA MRQL Sbjct: 295 REFYAQVLYFNQNV-VSENFKAYEHPIEWRDDPAALQAWKDGETGYPIVDAGMRQLRAEA 353 Query: 348 WMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFR 407 +MHNR+RMI A+FL KDLLVDWR G ++F +L D D A++NGGWQWAASTG D+ PYFR Sbjct: 354 YMHNRVRMIVAAFLTKDLLVDWRAGYDWFREKLADHDTANDNGGWQWAASTGTDAQPYFR 413 Query: 408 IFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPH--SWLDKNDLSLNYPLPIVDHKK 465 +FNP QG+R+DP +I ++PEL +VP IH+ H S ++ + YP PIVDH + Sbjct: 414 VFNPMTQGERYDPDADYITEFVPELRDVPADAIHSWHELSLSERRRHAPEYPDPIVDHSQ 473 Query: 466 ACHHTLNQYYAAK 478 + + A+ Sbjct: 474 RREDAIAMFERAR 486 >gi|126735833|ref|ZP_01751578.1| deoxyribodipyrimidine photolyase, putative [Roseobacter sp. CCS2] gi|126715020|gb|EBA11886.1| deoxyribodipyrimidine photolyase, putative [Roseobacter sp. CCS2] Length = 472 Score = 374 bits (961), Expect = e-101, Method: Composition-based stats. Identities = 159/482 (32%), Positives = 230/482 (47%), Gaps = 27/482 (5%) Query: 6 AMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASL 65 + S L+W R DLR+ D++AL AAC ++D VI VFI + A + S+ Sbjct: 2 SKSPILMWFRRDLRLGDHEALTAAC-DADRPVIPVFIYD---ELTESMGAAPKMRLGLSV 57 Query: 66 LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125 + SL++KG + +++ L ++++R Y+ + RD ++ Sbjct: 58 ADLAASLNEKGSKLILRRGK----ALDVLRELIKDTGADTVYWSRLYDPDGKTRDTDVKA 113 Query: 126 RLQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL 184 L+ I +SF VL P ++ YKVYTP K++ N V A L + + Sbjct: 114 ALKDDGITAESFKGHVLFEPWTVETKIGGFYKVYTPMWKSVRGNDVPAALPTPGTIPVPD 173 Query: 185 TGP----VTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ 240 + P + + + +GE A H L F V YV+ RD+PA+ Sbjct: 174 SWPKSDDIADWQMDAAMHRGADTLKSHCTVGEAAASHRLGAFIANHVANYVKNRDLPAVD 233 Query: 241 GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPS 300 GTS LS L+ G +SPR+CW+ + D K A ++L EL+WREF HL P Sbjct: 234 GTSGLSENLTYGEISPRKCWHSGWQALND----GKGDAETFLKELVWREFAYHLAYHTPR 289 Query: 301 VCMGKPFIPWTEKIEWNKDSHL--LQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITA 358 + + + WN D L ++AWKQG TG +DAAMR++ G MHNR RMI A Sbjct: 290 ITTDN-WKEDWDAFPWNTDERLAEVKAWKQGRTGIRFVDAAMREMYVTGTMHNRGRMIVA 348 Query: 359 SFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRF 418 S+L K LL W+IG +F L+D D SN GWQW+A +G D+ PYFR+FNP Q +F Sbjct: 349 SYLTKHLLCHWKIGMNWFADCLIDWDPCSNAMGWQWSAGSGPDATPYFRVFNPVTQLDKF 408 Query: 419 DPQGTFIRHWLPELNNVPTQ-----YIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQ 473 D +I+ W+ E P+ Y P SW S YP PIV L+ Sbjct: 409 DKDRAYIKKWIAEGTKRPSATALSYYDMIPESWGMTAQDS--YPDPIVPADVGRSRALDA 466 Query: 474 YY 475 Y Sbjct: 467 YQ 468 >gi|158424448|ref|YP_001525740.1| deoxyribodipyrimidine photolyase [Azorhizobium caulinodans ORS 571] gi|158331337|dbj|BAF88822.1| deoxyribodipyrimidine photolyase [Azorhizobium caulinodans ORS 571] Length = 484 Score = 374 bits (961), Expect = e-101, Method: Composition-based stats. Identities = 150/487 (30%), Positives = 235/487 (48%), Gaps = 20/487 (4%) Query: 5 TAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYAS 64 +A ++W R+DLR+ DN A AA S +V+A+++ + + ++ S Sbjct: 2 SAAGTAVIWFRDDLRLADNPA-LAAAAASGRRVLALYVLDEDSPGVRALGGAALWWLAGS 60 Query: 65 LLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLE 124 L ++ L Q G+ + ++ + + +N + E D+ + Sbjct: 61 LRALKAELGQHGVPLVLRRG----EAGRIVPDVARAAGADLVAFNWRAGKAEQAVDEAVA 116 Query: 125 KRL-QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIR 183 + L V + +L PGS+ + + ++ F +A ++ + R+LPVP + Sbjct: 117 RHLSAAGVTVERTLGHLLHAPGSVRGTGGGLPRTFSSFMRAAVKG--RDIGRTLPVPRLN 174 Query: 184 LTGPVTPSNIPRFFDYPFQ-----AIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPA 238 P+ ++ + P Q + + GE A L F + + Y E RD P Sbjct: 175 GAAPLPCDDLEEWALEPTQPDWAGGLRTTWHPGEAAARARLEAFLADGLAGYGEGRDRPD 234 Query: 239 IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFY 298 S+LSPYL G +SPRQ D P + EL WREF HL+ Sbjct: 235 QTHVSRLSPYLRFGEISPRQV-LLAALAAGDAGTVPAKDVQKFEAELYWREFSHHLLFAV 293 Query: 299 PSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITA 358 P + + + W + L+ W++G TG+PI+DA MRQL GWMHNR+RMI A Sbjct: 294 PDLAR-RNLQASFDAFPWRECPGDLKKWQKGRTGYPIVDAGMRQLWQTGWMHNRVRMIVA 352 Query: 359 SFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRF 418 SFL K LL+ W+ GE +F L+D DLA+N WQW A +G D+ PYFRIFNP +QG++F Sbjct: 353 SFLCKHLLLPWQDGELWFWDTLVDADLANNAASWQWVAGSGADAAPYFRIFNPVLQGEKF 412 Query: 419 DPQGTFIRHWLPELNNVPTQYIHAPHSWLDK-----NDLSLNYPLPIVDHKKACHHTLNQ 473 DP+GT++R ++PEL +VP + IH P S + L +YP P+V+H A L Sbjct: 413 DPEGTYVRTYVPELKDVPARLIHQPWSAPLELTRYGVRLGRDYPEPMVEHGAARDRALRA 472 Query: 474 YYAAKKQ 480 + +K Sbjct: 473 FEHTRKD 479 >gi|297692835|ref|XP_002823736.1| PREDICTED: cryptochrome-1-like [Pongo abelii] Length = 586 Score = 374 bits (960), Expect = e-101, Method: Composition-based stats. Identities = 127/501 (25%), Positives = 203/501 (40%), Gaps = 38/501 (7%) Query: 7 MSVH-LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASL 65 M V+ + W R LR+ DN AL +D + V+I P + + F+ L Sbjct: 1 MGVNAVHWFRKGLRLHDNPALKECIQGADT-IRCVYILDPWFAGSSNVGINRWRFLLQCL 59 Query: 66 LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125 + SL + + + + +TKL E RD ++K Sbjct: 60 EDLDASLRKLNSRLFVIRG----QPADVFPRLFKEWNITKLSIEYDSEPFGKERDAAIKK 115 Query: 126 RLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLV-QADLRSLPVPAI-- 182 + S L L+ +++ P Q L+ + + +PV I Sbjct: 116 LATEAGVEVIVRISHTLY---DLDKIIELNGGQPPLTYKRFQTLISKMEPLEIPVETITS 172 Query: 183 ----RLTGPVTPSNIPR-----FFDYPFQA---IDPMFPIGEQNALHILRKFCKEKVYYY 230 + T P++ + + + F ++P GE AL L + + K + Sbjct: 173 EVIEKCTTPLSDDHDEKYGVPSLEELGFDTDGLSSAVWPGGETEALTRLERHLERKAWVA 232 Query: 231 VEQRDIPAIQGT----SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELI 286 +R + LSPYL G LS R + +L + + + K S S +L+ Sbjct: 233 NFERPRMNANSLLASPTGLSPYLRFGCLSCRLFYFKLTDLYKKVK-KNSSPPLSLYGQLL 291 Query: 287 WREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTI 346 WREF+ P + P +I W+K+ L W +G TGFP IDA M QL Sbjct: 292 WREFFYTAATNNPRFDKMEG-NPICVQIPWDKNPEALAKWAEGRTGFPWIDAIMTQLRQE 350 Query: 347 GWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPY 405 GW+H+ R A FL + DL + W G + F LLD D + N G W W S + + Sbjct: 351 GWIHHLARHAVACFLTRGDLWISWEEGMKVFEELLLDADWSINAGSWMW-LSCSSFFQQF 409 Query: 406 FRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLD------KNDLSLNYPLP 459 F + P G+R DP G +IR +LP L P +YI+ P + + K + +NYP P Sbjct: 410 FHCYCPVGFGRRTDPNGDYIRRYLPVLRGFPAKYIYDPWNAPEGIQKVAKCLIGVNYPKP 469 Query: 460 IVDHKKACHHTLNQYYAAKKQ 480 +V+H +A + + +Q Sbjct: 470 MVNHAEASRLNIERMKQIYQQ 490 >gi|113197027|gb|ABI31780.1| cryptochrome 1 protein [Brassica rapa] Length = 704 Score = 374 bits (960), Expect = e-101, Method: Composition-based stats. Identities = 143/523 (27%), Positives = 231/523 (44%), Gaps = 49/523 (9%) Query: 2 KATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFI 61 + +VW R DLR+ DN AL AA VIAVF+ PE+ + ++ Sbjct: 4 SCSGGGGCSIVWFRRDLRVEDNPALAAAVRAG--PVIAVFVWAPEEEGHYQPGRVSRWWL 61 Query: 62 YASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDK 121 SL Q+ SL G + + DS+ L +++F+N Y+ + RD Sbjct: 62 KNSLAQLDSSLRSLGTCLITKRST---DSVASLLEVVKSTGASQIFFNHLYDPLSLVRDH 118 Query: 122 LLEKRL-QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVP 180 + L + KSF+ +L P + + + + ++ F + + + LP Sbjct: 119 RAKDALTAEGIAVKSFNADLLYEPWEVTDELGRPFSMFAAFWERCLSMPYDPESPLLPPK 178 Query: 181 AIR-----------------------LTGPVTPSNIPRF--FDYPFQAIDPM----FPIG 211 I L G V+ D + + + + G Sbjct: 179 KIISGLLLHHTLSEIVSYPLLITLFVLAGDVSKCVADTLIFEDESEKGSNALLARAWSPG 238 Query: 212 EQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLL 271 NA L F + Y + R TS LSP+L G +S R+ ++ L+ + V Sbjct: 239 WSNADKALTTFINGPLIEYSKNRRKADSATTSFLSPHLHFGEVSVRKVFHLLRIKQVAWA 298 Query: 272 IKPKSGAFS----WLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWK 327 + +L + RE+ R++ +P +P + + W D + +AW+ Sbjct: 299 NEGNQAGEESVNLFLKSIGLREYSRYISFNHP-YSHERPLLGHLKFFPWAVDENYFKAWR 357 Query: 328 QGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLAS 387 QG TG+P++DA MR+L GW+H+R+R++ +SF VK L + WR G +YF LLD DL S Sbjct: 358 QGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLES 417 Query: 388 NNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWL 447 + GWQ+ T DS + RI NP +G +FDP G ++R WLPEL+ +PT++IH P + Sbjct: 418 DALGWQYITGTLPDSREFDRIDNPQFEGYKFDPNGEYVRRWLPELSRLPTEWIHHPWNAP 477 Query: 448 DKN------DLSLNYPLPIVDHKKACHH---TLNQYYAAKKQS 481 + +L NYP PIV +A L+Q + + S Sbjct: 478 ESVLQAAGIELGSNYPRPIVGLDEAKARLHEALSQMWQLEAAS 520 >gi|193211372|ref|NP_001123207.1| cryptochrome-1 [Ovis aries] gi|152940829|gb|ABS44879.1| cryptochrome 1 [Ovis aries] Length = 587 Score = 374 bits (960), Expect = e-101, Method: Composition-based stats. Identities = 126/502 (25%), Positives = 203/502 (40%), Gaps = 40/502 (7%) Query: 7 MSVH-LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASL 65 M V+ + W R LR+ DN AL +D + V+I P + + F+ L Sbjct: 1 MGVNAVHWFRKGLRLHDNPALKECIQGADT-IRCVYILDPWFAGSSNVGINRWRFLLQCL 59 Query: 66 LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125 + +L + + + + +TKL E RD ++K Sbjct: 60 EDLDANLRKLNSRLFVIRG----QPADVFPRLFKEWNITKLSIEYDSEPFGKERDAAIKK 115 Query: 126 RL-QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLV-QADLRSLPVPAI- 182 + V L L+ +++ P Q L+ + + +PV I Sbjct: 116 LATEAGVEVIIRISHTLYD----LDKIIELNGGQPPLTYKRFQTLISKMEPLEIPVETIT 171 Query: 183 -----RLTGPVTPSNIPR-----FFDYPFQA---IDPMFPIGEQNALHILRKFCKEKVYY 229 + T P++ + + + F ++P GE AL L + + K + Sbjct: 172 SEVMEKCTTPLSDDHDEKYGVPSLEELGFDTDGLPSAVWPGGETEALTRLERHLERKAWV 231 Query: 230 YVEQRDIPAIQGT----SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNEL 285 +R + LSPYL G LS R + +L + + + K S S +L Sbjct: 232 ANFERPRMNANSLLASPTGLSPYLRFGCLSCRLFYFKLTDLYKKVK-KNSSPPLSLYGQL 290 Query: 286 IWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNT 345 +WREF+ P + P +I W+K+ L W +G TGFP IDA M QL Sbjct: 291 LWREFFYTAATNNPRFDKMEG-NPICVQIPWDKNPEALAKWAEGRTGFPWIDAIMTQLRQ 349 Query: 346 IGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVP 404 GW+H+ R A FL + DL + W G + F LLD D + N G W W S + Sbjct: 350 EGWIHHLARHAVACFLTRGDLWISWEEGMKVFEELLLDADWSINAGSWMW-LSCSSFFQQ 408 Query: 405 YFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLD------KNDLSLNYPL 458 +F + P G+R DP G +IR +LP L P +YI+ P + + K + +NYP Sbjct: 409 FFHCYCPVGFGRRTDPNGDYIRRYLPVLRGFPAKYIYDPWNAPEGIQKVAKCLIGVNYPK 468 Query: 459 PIVDHKKACHHTLNQYYAAKKQ 480 P+V+H +A + + +Q Sbjct: 469 PMVNHAEASRLNIERMKQIYQQ 490 >gi|326493172|dbj|BAJ85047.1| predicted protein [Hordeum vulgare subsp. vulgare] gi|326496489|dbj|BAJ94706.1| predicted protein [Hordeum vulgare subsp. vulgare] Length = 656 Score = 374 bits (960), Expect = e-101, Method: Composition-based stats. Identities = 127/491 (25%), Positives = 217/491 (44%), Gaps = 29/491 (5%) Query: 10 HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69 +VW R DLRI DN A D V+ VFI P + + ++ SL + Sbjct: 7 TVVWFRKDLRIDDNP--ALAAAARDGAVLPVFIWCPAEEGRFYPGRCSRWWLKESLAHLA 64 Query: 70 KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLE-KRLQ 128 KSL G + +++ L R T++ YN Y+ + RD ++ + L Sbjct: 65 KSLEALGCPLVLIRAQT---TLDALLQCVHSIRATRVVYNHLYDPISLVRDDKIKNELLG 121 Query: 129 HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188 + +SF+ +L P I + + + + + ++ ++ P + ++G Sbjct: 122 LGISMQSFNGDLLYEPWEIYDENGLAFTTFNMYWEKCMELPIEISPSLAPWRLVPVSGIE 181 Query: 189 TPS---------NIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAI 239 + + + + G +NA L F + Y + A Sbjct: 182 NLCTSSIDNLGLESSKDEESSNALLSRAWSPGWRNAEKTLEDFVCHGLLDYSKDGMKVAG 241 Query: 240 QGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFS----WLNELIWREFYRHLM 295 TS LSPYL G +S R+ + ++ + + + S A +L + RE+ R+L Sbjct: 242 TTTSLLSPYLHYGEVSVRKIYQLVRMQQIKCGNEGNSEAGESVNLFLRSIGLREYSRYLC 301 Query: 296 AFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRM 355 +P + + + W D ++W+QG TG+P++DA MR+L GW HNR+R+ Sbjct: 302 FNFP-FTHERSLLGNLKHYPWRADEDRFKSWRQGMTGYPLVDAGMRELWATGWTHNRIRV 360 Query: 356 ITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQG 415 I +SF VK LL+ W G +YF LLD D+ S+ GWQ+ + D R+ NP +QG Sbjct: 361 IVSSFAVKFLLIPWTWGMKYFWDVLLDADIESDILGWQYISGCLPDGHELGRLDNPEVQG 420 Query: 416 KRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDK------NDLSLNYPLPIVDHKKACH- 468 +++DP G ++R W+PEL +P ++IH P +L NYP+PIV+ A Sbjct: 421 QKYDPDGEYVRTWIPELARMPGEWIHHPWDAPSSILEVAGVELGFNYPMPIVELHMAREC 480 Query: 469 --HTLNQYYAA 477 ++ + Sbjct: 481 LDDAISTMWQL 491 >gi|219888079|gb|ACL54414.1| unknown [Zea mays] Length = 688 Score = 374 bits (960), Expect = e-101, Method: Composition-based stats. Identities = 142/490 (28%), Positives = 229/490 (46%), Gaps = 23/490 (4%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 +VW R DLR+ DN A AA + +V+ ++ +PE+ + +I SL + Sbjct: 4 VVWFRRDLRVEDNPA-LAAAARAGGEVVPAYVWSPEEEGPYYPGRVSRWWISQSLNHLDA 62 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ-H 129 SL + G + S D+ L T +++N Y+ + RD+ L++ L Sbjct: 63 SLRRLGAGKLVTRRSA--DAAVALLQLVRDTGATHVYFNHLYDPISLVRDRRLKEMLAAE 120 Query: 130 RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG-PV 188 ++ +SF+ +L P +++ Q + ++ PF + LP I + Sbjct: 121 GIVVQSFNSDLLYEPWEVVDDEGQPFTMFDPFWNRCLSMPYDPPAPLLPPKRINSGDLSM 180 Query: 189 TPSNIPRFFDYPFQAIDPM----FPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244 PS F D + + + + G QNA L F + Y R TS Sbjct: 181 CPSEDLIFEDESERGSNALLARAWTPGWQNADKALTAFLNGPLADYSVNRKKADSASTSL 240 Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFS----WLNELIWREFYRHLMAFYPS 300 LSP+L G LS R+ ++ ++ + + + A +L + RE+ R+L +PS Sbjct: 241 LSPHLHFGELSVRKVFHLVRMKQLVWSNEGNHAAEESCTLFLRSIGLREYSRYLSFNHPS 300 Query: 301 VCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASF 360 +P + W D + W+QG TG+P++DA MR+L GW+H+R+R++ ASF Sbjct: 301 -SHERPLLAHLRFFPWVVDESYFKIWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVASF 359 Query: 361 LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDP 420 VK L + WR G +YF LLD DL S+ GWQ+ + D RI NP +G +FDP Sbjct: 360 FVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYITGSLPDGRELDRIDNPQFEGYKFDP 419 Query: 421 QGTFIRHWLPELNNVPTQYIHAPH----SWLDKNDLSL--NYPLPIVDHKKAC---HHTL 471 G ++R W+PEL +PT++IH P S L + L NYPLPIV+ A L Sbjct: 420 HGEYVRRWIPELARLPTEWIHHPWDAPVSVLQAAGIELGSNYPLPIVELDAAKGRLQAAL 479 Query: 472 NQYYAAKKQS 481 ++ + + S Sbjct: 480 SEMWQLEAAS 489 >gi|307153163|ref|YP_003888547.1| cryptochrome, DASH family [Cyanothece sp. PCC 7822] gi|306983391|gb|ADN15272.1| cryptochrome, DASH family [Cyanothece sp. PCC 7822] Length = 495 Score = 374 bits (960), Expect = e-101, Method: Composition-based stats. Identities = 137/497 (27%), Positives = 235/497 (47%), Gaps = 37/497 (7%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQ-----HGISARQSHFIYASL 65 L+W RNDLR+ D++ L A A++I + Q+R+ ++ F+ SL Sbjct: 7 LIWYRNDLRLHDHEPLNKALKE-KAEIIPFYCFDERQFRKTSYGFPKTGNFRAQFLLESL 65 Query: 66 LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125 ++KSL ++G + + + + ++T ++Y+++ E+ +K LE Sbjct: 66 ADLKKSLQERGSDLIIRKGLPE----KIIPQLAQELKLTAVYYHQEVTAEELAVEKALES 121 Query: 126 RLQH-RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL 184 L RV +SF + L P ++ + +++T FRK + + + P + Sbjct: 122 GLNKIRVKTESFWGATLYHPDNLPFKIAHIPELFTNFRKKVEKASTVDPILPTP----KS 177 Query: 185 TGPVTPSNIPRFFDYPFQAIDP---------MFPIGEQNALHILRKFCKEKV--YYYVEQ 233 P+ I D ++ F GE AL L ++ +K Y E Sbjct: 178 LSPLPAIEIGTLPDLAALGLETPIFDQRGVLKFRGGETAALERLEEYFWQKNCLKSYKET 237 Query: 234 RD-IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYR 292 R+ + +S+ SP+L+ G +SPR + +++ + + + EL+WR+++R Sbjct: 238 RNGMLGGDYSSKFSPWLASGCISPRYIYEAVQKYEQQRV--KNDSTYWLIFELLWRDYFR 295 Query: 293 HLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNR 352 + A + + + + + W +D Q W++G TG+P++DA MR+L G+M NR Sbjct: 296 FICAKHGNKIFYPSGLQGLD-LPWKEDWQRFQLWQEGKTGYPLVDANMRELAATGFMSNR 354 Query: 353 LRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPT 412 R ASFL K+L ++W +G E+F S L+D D+ SN G W + A GND+ FR FN Sbjct: 355 GRQNVASFLTKNLGLNWIMGAEWFESLLIDYDVCSNYGNWNYTAGVGNDARG-FRYFNIP 413 Query: 413 IQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND------LSLNYPLPIVDHKKA 466 Q K +DP G ++RHWLPEL VP IH P + L ++YP P+VD K+ Sbjct: 414 KQSKDYDPLGEYLRHWLPELAAVPGDKIHEPWKLSSEEQKRYQVRLGVDYPQPVVDFFKS 473 Query: 467 CHHTLNQYYAAKKQSLL 483 Y +K + L Sbjct: 474 IKTNEAIYSTREKGTRL 490 >gi|302564841|ref|NP_001181088.1| cryptochrome-1 [Macaca mulatta] Length = 586 Score = 374 bits (960), Expect = e-101, Method: Composition-based stats. Identities = 126/501 (25%), Positives = 203/501 (40%), Gaps = 38/501 (7%) Query: 7 MSVH-LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASL 65 M V+ + W R LR+ DN AL +D + V+I P + + F+ L Sbjct: 1 MGVNAVHWFRKGLRLHDNPALKECIQGADT-IRCVYILDPWFAGSSNVGINRWRFLLQCL 59 Query: 66 LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125 + +L + + + + +TKL E RD ++K Sbjct: 60 EDLDANLRKLNSRLFVIRG----QPADVFPRLFKEWNITKLSIEYDSEPFGKERDAAIKK 115 Query: 126 RLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLV-QADLRSLPVPAI-- 182 + S L L+ +++ P Q L+ + + +PV I Sbjct: 116 LATEAGVEVIVRISHTLY---DLDKIIELNGGQPPLTYKRFQTLISKMEPLEIPVETITS 172 Query: 183 ----RLTGPVTPSNIPR-----FFDYPFQA---IDPMFPIGEQNALHILRKFCKEKVYYY 230 + T P++ + + + F ++P GE AL L + + K + Sbjct: 173 EVIEKCTTPLSDDHDEKYGVPSLEELGFDTDGLSSAVWPGGETEALTRLERHLERKAWVA 232 Query: 231 VEQRDIPAIQGT----SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELI 286 +R + LSPYL G LS R + +L + + + K S S +L+ Sbjct: 233 NFERPRMNANSLLASPTGLSPYLRFGCLSCRLFYFKLTDLYKKVK-KNSSPPLSLYGQLL 291 Query: 287 WREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTI 346 WREF+ P + P +I W+K+ L W +G TGFP IDA M QL Sbjct: 292 WREFFYTAATNNPRFDKMEG-NPICVQIPWDKNPEALAKWAEGRTGFPWIDAIMTQLRQE 350 Query: 347 GWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPY 405 GW+H+ R A FL + DL + W G + F LLD D + N G W W S + + Sbjct: 351 GWIHHLARHAVACFLTRGDLWISWEEGMKVFEELLLDADWSINAGSWMW-LSCSSFFQQF 409 Query: 406 FRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLD------KNDLSLNYPLP 459 F + P G+R DP G +IR +LP L P +YI+ P + + K + +NYP P Sbjct: 410 FHCYCPVGFGRRTDPNGDYIRRYLPVLRGFPAKYIYDPWNAPEGIQKVAKCLIGINYPKP 469 Query: 460 IVDHKKACHHTLNQYYAAKKQ 480 +V+H +A + + +Q Sbjct: 470 MVNHAEASRLNIERMKQIYQQ 490 >gi|304571316|dbj|BAJ15776.1| cryptochrome1 [Cardamine nipponica] Length = 693 Score = 374 bits (960), Expect = e-101, Method: Composition-based stats. Identities = 137/491 (27%), Positives = 229/491 (46%), Gaps = 25/491 (5%) Query: 10 HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69 +VW R DLR+ DN AL AA VIA+F+ PE+ + ++ SL Q+ Sbjct: 2 SIVWFRRDLRVEDNPALAAAVRAG--PVIALFVWAPEEEGHYHPGRVSRWWLKNSLAQLD 59 Query: 70 KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL-Q 128 SL G + + DS+ L +++F+N Y+ + RD + L Sbjct: 60 SSLRSLGTCLITKRST---DSVASLLDVVKSTGASQIFFNHLYDPLSLVRDHRAKDVLTA 116 Query: 129 HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG-P 187 + +SF+ +L P + + + + ++ F + + + LP I P Sbjct: 117 QGIAVRSFNADLLYEPWEVTDELGRPFSMFAAFWERCLSMPYDPESPLLPPKKIISGDVP 176 Query: 188 VTPSNIPRFFDYPFQAIDPM----FPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS 243 S+ F D + + + + G NA L F + Y + R TS Sbjct: 177 KCVSDPLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSATTS 236 Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFS----WLNELIWREFYRHLMAFYP 299 LSP+ G +S R+ ++ ++ + V + +L + RE+ R++ +P Sbjct: 237 FLSPHFHFGEVSVRKVFHLVRIKQVAWANEGNQAGEESVNLFLKSIGLREYSRYISFNHP 296 Query: 300 SVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITAS 359 +P + + W D + +AW+QG TG+P++DA MR+L GW+H+R+R++ +S Sbjct: 297 -YSHERPLLGHLKFFPWAVDENYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSS 355 Query: 360 FLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFD 419 F VK L + WR G +YF LLD DL S+ GWQ+ T DS + RI NP +G +FD Sbjct: 356 FFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYITGTLPDSREFDRIDNPQFEGYKFD 415 Query: 420 PQGTFIRHWLPELNNVPTQYIHAPHSWLDKN------DLSLNYPLPIVDHKKACHH---T 470 P G ++R WLPEL+ +PT++IH P + + +L NYP P++ +A Sbjct: 416 PNGEYVRRWLPELSRLPTEWIHHPWNAPESVLQAAGIELGSNYPRPVLGLDEAKARLHEA 475 Query: 471 LNQYYAAKKQS 481 L+Q + + S Sbjct: 476 LSQMWQLEAAS 486 >gi|81864807|sp|Q70AD6|CRY1_SPAJD RecName: Full=Cryptochrome-1 gi|44843612|emb|CAE54425.1| sCRY1 protein [Spalax judaei] Length = 587 Score = 374 bits (960), Expect = e-101, Method: Composition-based stats. Identities = 125/501 (24%), Positives = 202/501 (40%), Gaps = 38/501 (7%) Query: 7 MSVH-LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASL 65 M V+ + W R LR+ DN AL +D + V+I P + + F+ L Sbjct: 1 MGVNAVHWFRKGLRLHDNPALKECIQGADT-IRCVYILDPWFAGSSNVGINRWRFLLQCL 59 Query: 66 LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125 + +L + + + + +TKL E RD ++K Sbjct: 60 EDLDANLRKLNSRLLVIRG----QPADVFPRLFKEWNITKLSIEYDSEPFGKERDAAIKK 115 Query: 126 RLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLV-QADLRSLPVPAI-- 182 + S L L+ +++ P Q L+ + + +PV I Sbjct: 116 LATEAGVEVIVRISHTLY---DLDKIIELNGGQPPLTYKRFQTLISKMEPLEIPVETITS 172 Query: 183 ----RLTGPVTPSNIPR-----FFDYPFQA---IDPMFPIGEQNALHILRKFCKEKVYYY 230 + T P++ + + + F ++P GE AL L + + + + Sbjct: 173 EVIEKCTTPLSDDHDEKYGVPSLEELGFDTDGLSSAVWPGGETEALTRLERHLERRAWVA 232 Query: 231 VEQRDIPAIQGT----SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELI 286 +R + LSPYL G LS R + +L + + + K S S +L+ Sbjct: 233 NFERPRMNANSLLASPTGLSPYLRFGCLSCRLFYFKLTDLYKKVK-KNSSPPLSLYGQLL 291 Query: 287 WREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTI 346 WREF+ P + P +I W+K+ L W +G TGFP IDA M QL Sbjct: 292 WREFFYTAATNNPRFDKMEG-NPICVQIPWDKNPEALAKWAEGRTGFPWIDAIMTQLRQE 350 Query: 347 GWMHNRLRMITASFLV-KDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPY 405 GW+H+ R A FL DL + W G + F LLD D + N G W W S + + Sbjct: 351 GWIHHLARHAVACFLTGSDLWISWEEGMKVFEELLLDADWSINAGSWMW-LSCSSFFQQF 409 Query: 406 FRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLD------KNDLSLNYPLP 459 F + P G+R DP G +IR +LP L P +YI+ P + + K + +NYP P Sbjct: 410 FHCYCPVGFGRRTDPNGDYIRRYLPVLRGFPAKYIYDPWNAPEGIQKVAKCLIGVNYPKP 469 Query: 460 IVDHKKACHHTLNQYYAAKKQ 480 +V+H +A + + +Q Sbjct: 470 MVNHAEASRLNIERMKQIYQQ 490 >gi|260753965|ref|YP_003226858.1| deoxyribodipyrimidine photo-lyase [Zymomonas mobilis subsp. mobilis NCIMB 11163] gi|258553328|gb|ACV76274.1| Deoxyribodipyrimidine photo-lyase [Zymomonas mobilis subsp. mobilis NCIMB 11163] Length = 469 Score = 373 bits (959), Expect = e-101, Method: Composition-based stats. Identities = 152/480 (31%), Positives = 245/480 (51%), Gaps = 28/480 (5%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 L+W R+D R+ DN A+ AA + + VI +I + + ++ SLL + + Sbjct: 8 LIWFRHDFRLRDNAAITAAIQSRN-PVICFYIQESADAKTENAAD---WWVAESLLALNR 63 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH- 129 L +KG + D+ + + Q KLF+NR+Y+ D++L+K ++ Sbjct: 64 QLKEKGGQLHLFEG----DAEKIIPEIVQQSHACKLFWNRRYDFKGKETDQILKKSIRAM 119 Query: 130 RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189 + +SF +++L P ++ N Q +++++ + +A+ +++ + P + T + Sbjct: 120 GLEVQSFPNNLLNEPWTVKNDKGQPFRIFSAYWRAVQRHMNIQAVLPCPENWVFSTREIR 179 Query: 190 PSNIPRFFD-YPFQAIDPMFPI--------GEQNALHILRKFCKEKVYYYVEQRDIPAIQ 240 + + D + I GE A L+ F + + +Y ++RD PA Sbjct: 180 HCLGYKDIAILAKETQDSSWKIKLKQSHRFGENEAHERLKSFIENDLAHYAKERDFPAKD 239 Query: 241 GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPS 300 GTS LS +L G +S +Q W+ + + G +L EL WREF ++ +P Sbjct: 240 GTSLLSAFLRSGQISSKQIWHEVTK------NGSGEGTSKFLAELGWREFAWSVLWEHPD 293 Query: 301 VCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASF 360 + + P +K+ W K S LQ WK+G TG+P IDA MR L G+M NRLRM+TASF Sbjct: 294 LN-QRNLRPEFDKMPWEKASDNLQRWKEGQTGYPFIDAGMRALWQTGFMPNRLRMVTASF 352 Query: 361 LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDP 420 LVK LL+DWR GE++F L+D D A N WQW A +G +S PYFRI NP +Q ++FDP Sbjct: 353 LVKHLLIDWREGEKWFAQTLVDYDPACNATNWQWVAGSGIESAPYFRIMNPILQSQKFDP 412 Query: 421 QGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQ 480 G +IR W+ EL +V T +IH P + NYPLPI+ H++ L + + Sbjct: 413 DGQYIREWVKELADVSTAFIHTPWK---ADKQPANYPLPIIAHEEGRDRALRAWKEIRHA 469 >gi|255975817|ref|ZP_05426403.1| deoxyribodipyrimidine photolyase [Enterococcus faecalis T2] gi|255968689|gb|EET99311.1| deoxyribodipyrimidine photolyase [Enterococcus faecalis T2] Length = 473 Score = 373 bits (959), Expect = e-101, Method: Composition-based stats. Identities = 167/477 (35%), Positives = 241/477 (50%), Gaps = 24/477 (5%) Query: 12 VWLRNDLRITDNKALYAACHNSDA-KVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 +W R DLR+ DNKAL A NS A ++I +F P+Q+ Q SA + F +ASL ++ Sbjct: 1 MWFRRDLRLQDNKALAHALQNSAADELILLFQMNPQQFIQE--SANHNAF-FASLASFKE 57 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQ-RVTKLFYNRQYEINEVRRDKLLEKRLQH 129 + Q + H + ++ + +++N +RD+ + + Sbjct: 58 RIDQ-----EAHLQIMVGEPLDLFSRLKRKLPDWQAIYFNEDTCGFGAKRDQQAMRFFEE 112 Query: 130 RVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188 I SF D+ L I + Y+V+TP+ + + + + + Sbjct: 113 NNIQSFSFQDAYLHGSEEIKKNDGSKYQVFTPYYNKWKEAPKETPIPVSYTAEKIFSACL 172 Query: 189 TPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPY 248 P + + + + +GE+ A L F +K+ Y +RD P TS LS + Sbjct: 173 FPEEEAAYREQIARIPLKHYSVGEKTARRCLNTFIDQKLRSYENKRDFPYQDQTSHLSTF 232 Query: 249 LSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFI 308 L G LS R W L + ++ EL WR+FY + + +P + Sbjct: 233 LRTGELSIRTIWQEL------ASMPSSLSKETFKKELAWRDFYNMIYSTFPQQ-KEEAIQ 285 Query: 309 PWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVD 368 I+W D + W++G TG+PIIDAAMRQLN GWMHNRLRMITASFLVK+L +D Sbjct: 286 EKFRYIQWTNDPEMFAKWQKGETGYPIIDAAMRQLNQTGWMHNRLRMITASFLVKNLHID 345 Query: 369 WRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHW 428 WR GE+YF L+D D A+N GGWQWAASTG D+VPYFRIFNP IQ K+FD G FI+ + Sbjct: 346 WRWGEKYFQKMLIDYDAANNIGGWQWAASTGTDAVPYFRIFNPIIQSKKFDNDGQFIKKY 405 Query: 429 LPELNNVPTQYIHAPHSWLDKND------LSLNYPLPIVDHKKACHHTLNQYYAAKK 479 +PEL VP +YIH P+ + L NYP PIVD+ + TL Y A+K+ Sbjct: 406 VPELKQVPQKYIHQPNLMNEALQTQYHVHLGENYPKPIVDYASSKKQTLFLYEASKE 462 >gi|114646730|ref|XP_509339.2| PREDICTED: cryptochrome-1 [Pan troglodytes] Length = 586 Score = 373 bits (959), Expect = e-101, Method: Composition-based stats. Identities = 126/501 (25%), Positives = 203/501 (40%), Gaps = 38/501 (7%) Query: 7 MSVH-LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASL 65 M V+ + W R LR+ DN AL +D + V+I P + + F+ L Sbjct: 1 MGVNAVHWFRKGLRLHDNPALKECIQGADT-IRCVYILDPWFAGSSNVGINRWRFLLQCL 59 Query: 66 LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125 + +L + + + + +TKL E RD ++K Sbjct: 60 EDLDANLRKLNSRLFVIRG----QPADVFPRLFKEWNITKLSIEYDSEPFGKERDAAIKK 115 Query: 126 RLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLV-QADLRSLPVPAI-- 182 + S L L+ +++ P Q L+ + + +PV I Sbjct: 116 LATEAGVEVIVRISHTLY---DLDKIIELNGGQPPLTYKRFQTLISKMEPLEIPVETITS 172 Query: 183 ----RLTGPVTPSNIPR-----FFDYPFQA---IDPMFPIGEQNALHILRKFCKEKVYYY 230 + T P++ + + + F ++P GE AL L + + K + Sbjct: 173 EVIEKCTTPLSDDHDEKYGVPSLEELGFDTDGLSSAVWPGGETEALTRLERHLERKAWVA 232 Query: 231 VEQRDIPAIQGT----SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELI 286 +R + LSPYL G LS R + +L + + + K S S +L+ Sbjct: 233 NFERPRMNANSLLASPTGLSPYLRFGCLSCRLFYFKLTDLYKKVK-KNSSPPLSLYGQLL 291 Query: 287 WREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTI 346 WREF+ P + P +I W+K+ L W +G TGFP IDA M QL Sbjct: 292 WREFFYTAATNNPRFDKMEG-NPICVQIPWDKNPEALAKWAEGRTGFPWIDAIMTQLRQE 350 Query: 347 GWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPY 405 GW+H+ R A FL + DL + W G + F LLD D + N G W W S + + Sbjct: 351 GWIHHLARHAVACFLTRGDLWISWEEGMKVFEELLLDADWSINAGSWMW-LSCSSFFQQF 409 Query: 406 FRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLD------KNDLSLNYPLP 459 F + P G+R DP G +IR +LP L P +YI+ P + + K + +NYP P Sbjct: 410 FHCYCPVGFGRRTDPNGDYIRRYLPVLRGFPAKYIYDPWNAPEGIQKVAKCLIGVNYPKP 469 Query: 460 IVDHKKACHHTLNQYYAAKKQ 480 +V+H +A + + +Q Sbjct: 470 MVNHAEASRLNIERMKQIYQQ 490 >gi|315172271|gb|EFU16288.1| FAD binding domain of DNA photolyase [Enterococcus faecalis TX1346] Length = 477 Score = 373 bits (959), Expect = e-101, Method: Composition-based stats. Identities = 166/478 (34%), Positives = 241/478 (50%), Gaps = 24/478 (5%) Query: 11 LVWLRNDLRITDNKALYAACHNSDA-KVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69 ++W R DLR+ DNKA A NS A ++I +F P+Q+ Q SA + F +ASL + Sbjct: 4 VMWFRRDLRLQDNKAFAHALQNSAADELILLFQMNPQQFIQE--SANHNAF-FASLASFK 60 Query: 70 KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQ-RVTKLFYNRQYEINEVRRDKLLEKRLQ 128 + + Q + H + ++ + +++N +RD+ + + Sbjct: 61 ERIDQ-----EAHLQIMVGEPLDLFSRLKRKLPDWQAIYFNEDTCGFGAKRDQQAMRFFE 115 Query: 129 HRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187 I SF D+ L I + Y+V+TP+ + + + + Sbjct: 116 ENNIQSFSFQDAYLHGSEEIKKNDGSKYQVFTPYYNKWKEAPKETPIPVSYTAEKIFSAC 175 Query: 188 VTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSP 247 + P + + + + +GE+ A L F +K+ Y +RD P TS LS Sbjct: 176 LFPEEEAAYREQIARIPLKHYSVGEKTARRCLNTFIDQKLQSYENKRDFPYQDQTSHLST 235 Query: 248 YLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPF 307 +L G LS R W L + ++ EL WR+FY + + +P + Sbjct: 236 FLRTGELSIRTIWQEL------ASVPSSLSKETFKKELAWRDFYNMIYSTFPQQ-KEEAI 288 Query: 308 IPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLV 367 I+W D + W++G TG+PIIDAAMRQLN GWMHNRLRMITASFLVK+L + Sbjct: 289 QEKFRYIQWTNDPEMFAKWQKGETGYPIIDAAMRQLNQTGWMHNRLRMITASFLVKNLHI 348 Query: 368 DWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRH 427 DWR GE+YF L+D D A+N GGWQWAASTG D+VPYFRIFNP IQ K+FD G FI+ Sbjct: 349 DWRWGEKYFQKMLIDYDAANNIGGWQWAASTGTDAVPYFRIFNPIIQSKKFDNDGQFIKK 408 Query: 428 WLPELNNVPTQYIHAPHSWLDKND------LSLNYPLPIVDHKKACHHTLNQYYAAKK 479 ++PEL VP +YIH P+ + L NYP PIVD+ + TL Y A+K+ Sbjct: 409 YVPELKQVPQKYIHQPNLMNEALQTQYHVHLGENYPKPIVDYASSKKQTLFLYEASKE 466 >gi|291290511|dbj|BAI82611.1| cryptochrome 1 [Xenopus (Silurana) tropicalis] Length = 605 Score = 373 bits (959), Expect = e-101, Method: Composition-based stats. Identities = 125/494 (25%), Positives = 200/494 (40%), Gaps = 37/494 (7%) Query: 13 WLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQKSL 72 W R LR+ DN AL +D + V+I P + + F+ L + +L Sbjct: 1 WFRKGLRLHDNPALRECIQGADT-IRCVYILDPWFAGSSNVGINRWRFLLQCLEDLDANL 59 Query: 73 SQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHRVI 132 + + + + ++TKL E RD ++K + Sbjct: 60 RKLNSRLFVIRG----QPADVFPRLFKEWKITKLSIEYDSEPFGKERDAAIKKLASEAGV 115 Query: 133 CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLV-QADLRSLPVPAI------RLT 185 S L L+ +++ P Q L+ + + +PV I + T Sbjct: 116 EVIVRISHTLY---DLDKIIELNGGQPPLTYKRFQTLISKMEPLEIPVETITAEVMEKCT 172 Query: 186 GPVTPSNIPR-----FFDYPFQA---IDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIP 237 PV + + + F ++P GE AL L + + K + +R Sbjct: 173 TPVLDDHDEKYGVPSLEELGFDTEGLPSAVWPGGETEALTRLERHLERKAWVANFERPRM 232 Query: 238 AIQG----TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRH 293 T+ LSPYL G LS R + +L + + + K S S +L+WREF+ Sbjct: 233 NANSLLASTTGLSPYLRFGCLSCRLFYFKLTDLYKKVK-KNSSPPLSLYGQLLWREFFYT 291 Query: 294 LMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRL 353 P + P +I W+++ L W +G TGFP IDA M QL GW+H+ Sbjct: 292 AATNNPRFDKMEG-NPICVQIPWDRNPEALAKWAEGRTGFPWIDAIMTQLRQEGWIHHLA 350 Query: 354 RMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPT 412 R A FL + DL + W G + F LLD D + N G W W S + +F + P Sbjct: 351 RHAVACFLTRGDLWISWEEGMKVFEELLLDADWSVNAGSWMW-LSCSSFFQQFFHCYCPV 409 Query: 413 IQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLD------KNDLSLNYPLPIVDHKKA 466 G+R DP G +IR +LP L P +YI+ P + + K + +NYP P+V+H +A Sbjct: 410 GFGRRTDPNGDYIRRYLPILKGFPPKYIYDPWNAPETVQKVAKCIIGVNYPKPMVNHAEA 469 Query: 467 CHHTLNQYYAAKKQ 480 + + +Q Sbjct: 470 SRLNIERMKQIYQQ 483 >gi|4758072|ref|NP_004066.1| cryptochrome-1 [Homo sapiens] gi|332241714|ref|XP_003270025.1| PREDICTED: cryptochrome-1 [Nomascus leucogenys] gi|74735764|sp|Q16526|CRY1_HUMAN RecName: Full=Cryptochrome-1 gi|1304107|dbj|BAA12068.1| photolyase [Homo sapiens] gi|1313902|dbj|BAA12710.1| photolyase homolog [Homo sapiens] gi|22539647|gb|AAH30519.1| Cryptochrome 1 (photolyase-like) [Homo sapiens] gi|119618201|gb|EAW97795.1| cryptochrome 1 (photolyase-like), isoform CRA_a [Homo sapiens] gi|119618203|gb|EAW97797.1| cryptochrome 1 (photolyase-like), isoform CRA_a [Homo sapiens] gi|121647009|gb|ABM64209.1| photolyase-like cryptochrome 1 [Homo sapiens] gi|158254536|dbj|BAF83241.1| unnamed protein product [Homo sapiens] gi|261858374|dbj|BAI45709.1| cryptochrome 1 [synthetic construct] gi|325464291|gb|ADZ15916.1| cryptochrome 1 (photolyase-like) [synthetic construct] Length = 586 Score = 373 bits (959), Expect = e-101, Method: Composition-based stats. Identities = 126/501 (25%), Positives = 203/501 (40%), Gaps = 38/501 (7%) Query: 7 MSVH-LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASL 65 M V+ + W R LR+ DN AL +D + V+I P + + F+ L Sbjct: 1 MGVNAVHWFRKGLRLHDNPALKECIQGADT-IRCVYILDPWFAGSSNVGINRWRFLLQCL 59 Query: 66 LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125 + +L + + + + +TKL E RD ++K Sbjct: 60 EDLDANLRKLNSRLFVIRG----QPADVFPRLFKEWNITKLSIEYDSEPFGKERDAAIKK 115 Query: 126 RLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLV-QADLRSLPVPAI-- 182 + S L L+ +++ P Q L+ + + +PV I Sbjct: 116 LATEAGVEVIVRISHTLY---DLDKIIELNGGQPPLTYKRFQTLISKMEPLEIPVETITS 172 Query: 183 ----RLTGPVTPSNIPR-----FFDYPFQA---IDPMFPIGEQNALHILRKFCKEKVYYY 230 + T P++ + + + F ++P GE AL L + + K + Sbjct: 173 EVIEKCTTPLSDDHDEKYGVPSLEELGFDTDGLSSAVWPGGETEALTRLERHLERKAWVA 232 Query: 231 VEQRDIPAIQGT----SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELI 286 +R + LSPYL G LS R + +L + + + K S S +L+ Sbjct: 233 NFERPRMNANSLLASPTGLSPYLRFGCLSCRLFYFKLTDLYKKVK-KNSSPPLSLYGQLL 291 Query: 287 WREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTI 346 WREF+ P + P +I W+K+ L W +G TGFP IDA M QL Sbjct: 292 WREFFYTAATNNPRFDKMEG-NPICVQIPWDKNPEALAKWAEGRTGFPWIDAIMTQLRQE 350 Query: 347 GWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPY 405 GW+H+ R A FL + DL + W G + F LLD D + N G W W S + + Sbjct: 351 GWIHHLARHAVACFLTRGDLWISWEEGMKVFEELLLDADWSINAGSWMW-LSCSSFFQQF 409 Query: 406 FRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLD------KNDLSLNYPLP 459 F + P G+R DP G +IR +LP L P +YI+ P + + K + +NYP P Sbjct: 410 FHCYCPVGFGRRTDPNGDYIRRYLPVLRGFPAKYIYDPWNAPEGIQKVAKCLIGVNYPKP 469 Query: 460 IVDHKKACHHTLNQYYAAKKQ 480 +V+H +A + + +Q Sbjct: 470 MVNHAEASRLNIERMKQIYQQ 490 >gi|84502965|ref|ZP_01001067.1| deoxyribodipyrimidine photolyase [Oceanicola batsensis HTCC2597] gi|84388710|gb|EAQ01581.1| deoxyribodipyrimidine photolyase [Oceanicola batsensis HTCC2597] Length = 472 Score = 373 bits (958), Expect = e-101, Method: Composition-based stats. Identities = 154/484 (31%), Positives = 230/484 (47%), Gaps = 34/484 (7%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 L+W R DLR++D+ AL A VI VFI G+ A + L Sbjct: 7 PTLLWFRRDLRLSDHPALTQAAARG--PVIPVFIHDDSVA---GLGAAPKWRLGEGLAVF 61 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128 + +L+++G + E L+ + T +++ R Y+ + + RD ++ L Sbjct: 62 RDALAERGARLILRRGPAR----EVLERLIDETGATAVYWTRAYDPDAIERDSRVKAALA 117 Query: 129 HRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187 R SF ++ P + +MY+VY+P+ +A+ V LR A L+ P Sbjct: 118 DRGTEACSFPGHLIFEPWEVETQQGKMYQVYSPYWRAVKDREVDRPLR-----APDLSAP 172 Query: 188 VTPSNIPRFFDY--------PFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAI 239 + D+ + GE A L F +++ Y E+RD+PA Sbjct: 173 SKWPDSEALEDWHLGAGMNRGAAIVARHCTPGEGAAQSRLGAFSAQRLEDYKERRDMPAE 232 Query: 240 QGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYP 299 TS +S YL++G +SPRQ W+ + KSGA + E++WREF HLM P Sbjct: 233 DATSDMSQYLTLGEISPRQLWHAALRGEAE----GKSGAEHFRKEVVWREFAYHLMYHTP 288 Query: 300 SVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITAS 359 + W +DS ++ WKQG TG +DAAMR++ G MHNR RM+ AS Sbjct: 289 RLLDENWREGWEAFCWSEEDSEAVRRWKQGRTGVRFVDAAMREMYVTGRMHNRSRMVVAS 348 Query: 360 FLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFD 419 +L K +LV WRIG+++F L+D D ASN+ GWQW A G D+ PYFR+FNP Q ++FD Sbjct: 349 YLTKHMLVHWRIGQKWFQDCLIDWDPASNSMGWQWVAGCGPDASPYFRVFNPDTQLEKFD 408 Query: 420 PQGTFIRHWLPELNNVPTQ----YIHA-PHSWLDKNDLSLNYPLPIVDHKKACHHTLNQY 474 G ++ WL E + P+ Y A P SW + +YP P+VD K+ L Y Sbjct: 409 RDGRYVARWLAECSRSPSDTALSYFDAIPESWGLSPE--DDYPEPVVDLKEGRRRALAAY 466 Query: 475 YAAK 478 K Sbjct: 467 EDIK 470 >gi|296775719|gb|ADH42995.1| Deoxyribodipyrimidine photolyase [uncultured SAR11 cluster alpha proteobacterium H17925_38M03] Length = 466 Score = 373 bits (958), Expect = e-101, Method: Composition-based stats. Identities = 154/479 (32%), Positives = 247/479 (51%), Gaps = 23/479 (4%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 + L WLR+D R N L A + +V+ ++ + Q ++ SL Sbjct: 3 KKIGLFWLRDDFRFVKNHGLIEATTKHN-QVVVFYLYKKNIYNDQ---EAQKWWLSKSLS 58 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 +K L++ IV + + ++F + L ++++ +++N+ YE + ++ D+ L Sbjct: 59 NFKKKLNELNIVLEIVETNSFKIFFDAL----IKKKDFXIYWNKVYEPDYLKFDEYLLNI 114 Query: 127 LQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADL------RSLPV 179 ++ I K F + L I +KV+TPF + + + + Sbjct: 115 FKNNNIYXKRFKGNALNEINEIKKGDGTPFKVFTPFWRTAEKFFSEKIPSKERVIKKCKN 174 Query: 180 PAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAI 239 ++ I D+ F+ + ++ EQ+A L+KF KE++ Y E R+ P+I Sbjct: 175 KTNFFKNSISVEKILPEKDW-FKNFEKIWLPDEQHAFKELQKFIKERIVNYSEGRNFPSI 233 Query: 240 QGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYP 299 +GTS+LSP++ G L WN ++ K G +L E+ WREF L+ +P Sbjct: 234 KGTSKLSPFIKFGQLHVETIWNECIKKKPK-----KIGTSKFLTEIGWREFNHSLINHFP 288 Query: 300 SVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITAS 359 + + +K W K+S L WK+G TG+PI+DA MR+L + GWMHNR+RMI S Sbjct: 289 HMLKSN-YSKKFDKFPWEKNSKFLDKWKKGMTGYPIVDAGMRELYSTGWMHNRVRMIVGS 347 Query: 360 FLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFD 419 FLVK LL+DW+ GE+YF + LLD ASN GWQW A G D+ PYFRIFNP +QG++FD Sbjct: 348 FLVKHLLIDWKYGEKYFKNCLLDYSPASNVSGWQWVAGCGADAAPYFRIFNPILQGEKFD 407 Query: 420 PQGTFIRHWLPELNNVPTQYIHAPHSW-LDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477 G +++ W+PEL N+ ++IH P + +K L +YP PIV H++A LN + Sbjct: 408 KDGEYVKKWVPELKNLSKKFIHKPWEFNNEKFKLGRDYPYPIVKHEEAREKALNAFKKI 466 >gi|302814412|ref|XP_002988890.1| hypothetical protein SELMODRAFT_967 [Selaginella moellendorffii] gi|300143461|gb|EFJ10152.1| hypothetical protein SELMODRAFT_967 [Selaginella moellendorffii] Length = 489 Score = 373 bits (958), Expect = e-101, Method: Composition-based stats. Identities = 134/491 (27%), Positives = 219/491 (44%), Gaps = 24/491 (4%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 LVW R DLR+ DN AL AA + V+ VF+ PE+ Q ++ SL+Q+ Sbjct: 3 TILVWFRRDLRLDDNPALAAAVARKGSIVVPVFVWCPEEEGQFQPGRVSRWWLKQSLIQL 62 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128 SL + G + + +++ L +++FYN Y+ + RD +++ L Sbjct: 63 SSSLERLGAPLLVRRTA---GTLDALLQIAHDTGASQVFYNHLYDPVSLIRDHRVKQGLA 119 Query: 129 -HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187 H + K+F +L P I + Q++ + F + P + L G Sbjct: 120 DHGISVKTFRGDLLYEPWEIYDDQGQVFTTFQAFWSKSLSMRDPEAPLLPPRQLLSLPGY 179 Query: 188 VTPSNIPRFFDYPFQA-------IDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ 240 + S +A + + G F + Y +R Sbjct: 180 LCQSCSIDQLGLENEAEKSSNALLARSWTPGWCAGDKAFTDFLSGPILQYSIRRKQIDSV 239 Query: 241 GTSQLSPYLSIGVLSPRQCWNRLK-EEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYP 299 TSQLSP+L G +S R+ + ++ ++F +L L RE+ R+L +P Sbjct: 240 TTSQLSPHLHFGEISIRKIFYSIRMQQFRSKEAVDVESMNMFLRALGLREYSRYLSFNFP 299 Query: 300 SVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITAS 359 + + + W D ++W+QG TG+P++DA MRQL GW+H ++R++ +S Sbjct: 300 -FTHKRSLLANLKHFPWRADEGYFKSWRQGRTGYPLVDAGMRQLWATGWLHCKIRVVVSS 358 Query: 360 FLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFD 419 FLVK L V W G +YF LLD D+ ++ GWQ+ + D R NP ++G + D Sbjct: 359 FLVKFLQVPWTWGMKYFWETLLDADVENDVLGWQYISGGLPDGHELDRWENPQVKGYKLD 418 Query: 420 PQGTFIRHWLPELNNVPTQYIHAPHSW------LDKNDLSLNYPLPIVDHKKA---CHHT 470 P+G ++R WLPEL+ VP +IH P +L NYP PIV+ A Sbjct: 419 PKGEYVRKWLPELSRVPIDWIHHPWDAPSTILRAAGVELGSNYPRPIVEVAAAYYRQQQA 478 Query: 471 LNQYYAAKKQS 481 L++ + KK + Sbjct: 479 LDEMW--KKSA 487 >gi|121997706|ref|YP_001002493.1| deoxyribodipyrimidine photo-lyase [Halorhodospira halophila SL1] gi|121589111|gb|ABM61691.1| Deoxyribodipyrimidine photo-lyase [Halorhodospira halophila SL1] Length = 477 Score = 373 bits (958), Expect = e-101, Method: Composition-based stats. Identities = 152/484 (31%), Positives = 233/484 (48%), Gaps = 21/484 (4%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M+ LVWLR DLR+ D AL A ++ ++ V+I P + R + A +++ SL Sbjct: 1 MTNALVWLRRDLRLADQPALARAAQTAE-RLAPVYIHAPAETRPT-VGAASCWWLHHSLA 58 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 + L+ G C + S E L + ++ E +++ + + Sbjct: 59 ALDAELASAGSRL----CLDTGPSAERLCHWAQVSDAAVVYCTAIAEPWARQQEAAVAEA 114 Query: 127 LQH-RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185 L V + D +L P ++ N + Y+ +TPF +++ L P Sbjct: 115 LAAIGVRLEVLADGLLTDPSAVRNRSGTPYRAFTPFWRSVRAQLDPPRPAPPPALPGLPE 174 Query: 186 GPVTPSNIPRFFDYPF----QAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQG 241 P + P + + P + G A L +F Y E+RD PA G Sbjct: 175 AIPEPQPLETLGLLPRIRWDEKLAPCWQPGAAGAQQRLERFLDGAGPAYGERRDFPAQPG 234 Query: 242 TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSV 301 TS+LSP+L G +S R W+ +++ + ++L EL WREF HL+ P + Sbjct: 235 TSRLSPHLHFGEISIRAVWHAVRDAQ-QMQPAAADALDTFLAELGWREFAYHLLWQQPEL 293 Query: 302 CMGKPFIPWTEKIEWNKDSH--LLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITAS 359 P + W +D LL AW++G TG P++DA MR+L GWMHNR+RM+ S Sbjct: 294 -HRTPIDERFSRFPWREDPDGALLDAWRRGATGIPLVDAGMRELWATGWMHNRVRMVVGS 352 Query: 360 FLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFD 419 FLVK+L + W+ GE +F L+D DLASN+ GWQW + G D+ PYFRIFNP QG+RFD Sbjct: 353 FLVKNLRLPWQHGEAHFRDTLVDWDLASNSMGWQWVSGCGADAAPYFRIFNPVRQGERFD 412 Query: 420 PQGTFIRHWLPELNNVPTQYIHAPHSWLDKND------LSLNYPLPIVDHKKACHHTLNQ 473 P G ++RHW+PE+ +P +IH P + L +YP P+VD + L Sbjct: 413 PDGDYVRHWVPEVAGLPKSHIHQPWAAPADARARCGLHLGRDYPEPLVDLATSRKEALAA 472 Query: 474 YYAA 477 ++A Sbjct: 473 FHAL 476 >gi|76808656|ref|YP_334184.1| deoxyribodipyrimidine photolyase [Burkholderia pseudomallei 1710b] gi|254258748|ref|ZP_04949802.1| deoxyribodipyrimidine photolyase [Burkholderia pseudomallei 1710a] gi|76578109|gb|ABA47584.1| deoxyribodipyrimidine photolyase [Burkholderia pseudomallei 1710b] gi|254217437|gb|EET06821.1| deoxyribodipyrimidine photolyase [Burkholderia pseudomallei 1710a] Length = 486 Score = 373 bits (958), Expect = e-101, Method: Composition-based stats. Identities = 154/494 (31%), Positives = 240/494 (48%), Gaps = 24/494 (4%) Query: 1 MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHF 60 M ++ +++ +VW R+DLR++D+ AL A S VI V++ + A + Sbjct: 1 MSSSISIAPAVVWFRDDLRVSDHPALMRAAE-SGRPVIGVYVFDERAGGRPLGGAARWW- 58 Query: 61 IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120 ++ SL ++L D + + S+ ++++R+Y + D Sbjct: 59 LHGSL----RALGAALAALGGTLALLRGDEHDTIVSFAAALGAGAVYWSRRYALAPRAVD 114 Query: 121 KLLEKRLQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPV 179 ++ L + I ++F+ S+L PG ++N + Y+V++ + +A ++ V A P Sbjct: 115 NAVQTALDAQGIAVETFNASLLFEPGDLVNADGRPYQVFSAYWRAAMRRGVPAPPLGAPR 174 Query: 180 PAIRLTGPVTPSNIPRFFD-YPFQAIDPMFPIG--------EQNALHILRKFCKEKVYYY 230 P + D + P + G E A LR F ++ Y Sbjct: 175 RLNGGALPAALARQCVALDALGLEPTGPDWAGGLRDAWRFGEDAAHRRLRAFVDSRLGGY 234 Query: 231 VEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREF 290 +RD P I TS+LSPY+ G LS RQ W+ + + ++ +L+EL WREF Sbjct: 235 AAERDRPGIASTSRLSPYVRFGNLSARQLWHAAADAYAHGAAT-QADLDKFLSELGWREF 293 Query: 291 YRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMH 350 + +P + + + + W D L AW++G TG+P +DA MR+L GWMH Sbjct: 294 GWTQLHHFPDLPR-RNLRHTLDGMPWRDDPAALAAWRRGATGYPFVDAGMRELWATGWMH 352 Query: 351 NRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFN 410 NR+RM+ ASFLVK LL+DWR GE +F L+D D ASN WQW A G D+ PYFRIFN Sbjct: 353 NRVRMVCASFLVKHLLIDWRAGEAWFWDTLVDADAASNAANWQWVAGCGADAAPYFRIFN 412 Query: 411 PTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKN------DLSLNYPLPIVDHK 464 P QG++FDP G ++R W+PEL +P IH P + L YPLPIV H Sbjct: 413 PVAQGRKFDPDGAYVRRWVPELAGLPPATIHEPWAAPGAQLAAAGVRLGETYPLPIVAHD 472 Query: 465 KACHHTLNQYYAAK 478 A L+ + A + Sbjct: 473 AARRRALDAFGAIR 486 >gi|148260613|ref|YP_001234740.1| deoxyribodipyrimidine photo-lyase [Acidiphilium cryptum JF-5] gi|146402294|gb|ABQ30821.1| deoxyribodipyrimidine photo-lyase type I [Acidiphilium cryptum JF-5] Length = 471 Score = 373 bits (958), Expect = e-101, Method: Composition-based stats. Identities = 152/490 (31%), Positives = 225/490 (45%), Gaps = 35/490 (7%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M+ L+WLRNDLR+ DN AL AA + V+ VF+ P +++ SL Sbjct: 1 MATTLLWLRNDLRLADNPALAAAIEEGN--VLPVFVLDPAAE----TGGASRWWLHHSLA 54 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 ++ + +G + D+ + + + + R +E D+ + Sbjct: 55 ALEADFTARGGRLVLRRG----DAAAIVPALAREIGAVAVHAGRAHEPWLREADRRVAAA 110 Query: 127 LQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185 LQ I +++ P I +Y VYTPF +A A Sbjct: 111 LQEAGIGFHRHRSALMFGPERITTRTGGVYGVYTPFSRACFDAFAPRPPIP----APARL 166 Query: 186 GPVTPSNIPRFFDYPFQAIDPMFPIG--------EQNALHILRKFCKEKVYYYVEQRDIP 237 R D+ + P + G E A L F + Y QRD+P Sbjct: 167 AAAGDPGGDRLGDWGLLPVKPDWAGGLRASWTPGEAGARARLDAFLADGFGEYDRQRDLP 226 Query: 238 AIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAF 297 I GTS LSP+L G ++ W + ++L ELIWREF +L+ Sbjct: 227 GIAGTSGLSPHLHWGEIAIDAVWRAAVAA-----PGRDAARQTFLKELIWREFAAYLLWH 281 Query: 298 YPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMIT 357 P + +P + W + + L AW++G TG PI+DA MRQL GWMHNR+RMI Sbjct: 282 TPDLAT-RPMKAQFAAMPWRESAADLAAWQRGRTGVPIVDAGMRQLWQTGWMHNRVRMIV 340 Query: 358 ASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKR 417 ASFLVK LL+ W+ GE +F L+D D ASN WQW A +G D+ PYFRIFNP +QG++ Sbjct: 341 ASFLVKHLLLPWQAGERWFHDCLVDADAASNAASWQWVAGSGADAAPYFRIFNPVLQGRK 400 Query: 418 FDPQGTFIRHWLPELNNVPTQYIHAPHSWLD------KNDLSLNYPLPIVDHKKACHHTL 471 FDP G ++R ++PE+ N+P +Y+HAP + L +YP P+VD + L Sbjct: 401 FDPDGAYVRRFVPEIANLPDKYLHAPWEAPEIVLRGAGVRLGASYPRPVVDLAEGRERAL 460 Query: 472 NQYYAAKKQS 481 + A ++ Sbjct: 461 AAFAAISGKA 470 >gi|297813243|ref|XP_002874505.1| hypothetical protein ARALYDRAFT_327070 [Arabidopsis lyrata subsp. lyrata] gi|297320342|gb|EFH50764.1| hypothetical protein ARALYDRAFT_327070 [Arabidopsis lyrata subsp. lyrata] Length = 690 Score = 373 bits (958), Expect = e-101, Method: Composition-based stats. Identities = 138/491 (28%), Positives = 228/491 (46%), Gaps = 25/491 (5%) Query: 10 HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69 ++VW R DLR+ DN AL AA VIA+F+ PE+ + ++ SL Q+ Sbjct: 14 NIVWFRRDLRVEDNPALAAAVRAG--PVIALFVWAPEEEGHYHPGRVSRWWLKNSLAQLD 71 Query: 70 KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL-Q 128 SL G + + DS+ L +++F+N Y+ + RD + L Sbjct: 72 SSLRSLGTCLITKRST---DSVASLLDVVKSTGASQIFFNHLYDPLSLVRDHRAKDVLTA 128 Query: 129 HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188 + +SF+ +L P + + + + ++ F + + + LP I Sbjct: 129 QGIAVRSFNADLLYEPWEVTDELGRPFSMFAAFWERCLSMPYDPESPLLPPKKIISGDVS 188 Query: 189 TPSNIPRFFDYPFQA-----IDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS 243 + P F+ + + + G NA L F + Y + R TS Sbjct: 189 KCVSDPLVFEDDSERGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSATTS 248 Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFS----WLNELIWREFYRHLMAFYP 299 LSP+L G +S R+ ++ ++ + V + +L + RE+ R++ +P Sbjct: 249 FLSPHLHFGEVSVRKVFHLVRIKQVAWANEGNEAGEESVNLFLKSIGLREYSRYISFNHP 308 Query: 300 SVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITAS 359 +P + + W D + +AW+QG TG+P++DA MR+L GW+H+R+R++ +S Sbjct: 309 -YSHERPLLGHLKFFPWAVDENYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSS 367 Query: 360 FLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFD 419 F VK L + WR G +YF LLD DL S+ GWQ+ T DS + RI NP +G +FD Sbjct: 368 FFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYITGTLPDSREFDRIDNPQFEGYKFD 427 Query: 420 PQGTFIRHWLPELNNVPTQYIHAPHSWLDKN------DLSLNYPLPIVDHKKACHH---T 470 P G ++R WLPEL+ +PT +IH P + + +L NYP PIV +A Sbjct: 428 PNGEYVRRWLPELSRLPTDWIHHPWNAPESVLQAAGIELGSNYPRPIVGLDEAKARLHEA 487 Query: 471 LNQYYAAKKQS 481 L+Q + + S Sbjct: 488 LSQMWQLEAAS 498 >gi|304571326|dbj|BAJ15781.1| cryptochrome1 [Cardamine alpina] Length = 681 Score = 373 bits (958), Expect = e-101, Method: Composition-based stats. Identities = 136/491 (27%), Positives = 228/491 (46%), Gaps = 25/491 (5%) Query: 10 HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69 +VW R DLR+ DN AL AA VIA+F+ PE+ + ++ SL Q+ Sbjct: 2 SIVWFRRDLRVEDNPALAAAVRAG--PVIALFVWAPEEEGHYHPGRVSRWWLKNSLAQLD 59 Query: 70 KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL-Q 128 SL G + + DS+ L +++F+N Y+ + RD + L Sbjct: 60 SSLRSLGTCLITKRST---DSVASLLDVVKSTGASQIFFNHLYDPLSLVRDHRAKDVLTA 116 Query: 129 HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188 + +SF+ +L P + + + + ++ F + + + LP I Sbjct: 117 QGIAVRSFNADLLYEPWEVTDELGRPFSMFAAFWERCLSMPYDPESPLLPPKKIISGDVS 176 Query: 189 TPSNIPRFFDYPFQA-----IDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS 243 + P F+ + + + G NA L F + Y + R TS Sbjct: 177 KCVSDPLVFEDELEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSATTS 236 Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFS----WLNELIWREFYRHLMAFYP 299 LSP+L G +S R+ ++ ++ + V + +L + RE+ R++ +P Sbjct: 237 FLSPHLHFGEVSVRKVFHLVRIKQVAWANEGNQAGEESVNLFLKSIGLREYSRYISFNHP 296 Query: 300 SVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITAS 359 +P + + W D + +AW+QG TG+P++DA MR+L GW+H+R+R++ +S Sbjct: 297 -YSHERPLLGHLKFFPWAVDENYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSS 355 Query: 360 FLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFD 419 F VK L + WR G +YF LLD DL S+ GWQ+ T DS + RI NP +G +FD Sbjct: 356 FFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYITGTLPDSREFDRIDNPQFEGYKFD 415 Query: 420 PQGTFIRHWLPELNNVPTQYIHAPHSWLDKN------DLSLNYPLPIVDHKKACHH---T 470 P G ++R WLPEL+ +PT++IH P + + +L NYP P++ +A Sbjct: 416 PNGEYVRRWLPELSRLPTEWIHHPWNAPESVLQAAGIELGSNYPRPVLGLDEAKARLHEA 475 Query: 471 LNQYYAAKKQS 481 L+Q + + S Sbjct: 476 LSQMWQLEAAS 486 >gi|75048080|sp|Q8WP19|CRY1_MACFA RecName: Full=Cryptochrome-1 gi|17026058|dbj|BAB72089.1| cryptochrome 1 [Macaca fascicularis] Length = 586 Score = 373 bits (958), Expect = e-101, Method: Composition-based stats. Identities = 125/501 (24%), Positives = 203/501 (40%), Gaps = 38/501 (7%) Query: 7 MSVH-LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASL 65 M V+ + W R LR+ DN AL +D + V+I P + + F+ L Sbjct: 1 MGVNAVHWFRKGLRLHDNPALKECIQGADT-IRCVYILDPWFAGSSNVGINRWRFLLQCL 59 Query: 66 LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125 + +L + + + + +TKL E RD ++K Sbjct: 60 EDLDANLRKLNSRLFVIRG----QPADVFPRLFKEWNITKLSIEYDSEPFGKERDAAIKK 115 Query: 126 RLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLV-QADLRSLPVPAI-- 182 + S L L+ +++ P Q L+ + + +PV I Sbjct: 116 LATEAGVEVIVRISHTLY---DLDKIIELNGGQPPLTYKRFQTLISKMEPLEIPVETITS 172 Query: 183 ----RLTGPVTPSNIPR-----FFDYPFQA---IDPMFPIGEQNALHILRKFCKEKVYYY 230 + T P++ + + + F ++P GE AL L + + K + Sbjct: 173 EVIEKCTTPLSDDHDEKYGVPSLEELGFDTDGLSSAVWPGGETEALTRLERHLERKAWVA 232 Query: 231 VEQRDIPAIQGT----SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELI 286 +R + LSPYL G LS R + +L + + + + S S +L+ Sbjct: 233 NFERPRMNANSLLASPTGLSPYLRFGCLSCRLFYFKLTDLYKKVK-RNSSPPLSLYGQLL 291 Query: 287 WREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTI 346 WREF+ P + P +I W+K+ L W +G TGFP IDA M QL Sbjct: 292 WREFFYTAATNNPRFDKMEG-NPICVQIPWDKNPEALAKWAEGRTGFPWIDAIMTQLRQE 350 Query: 347 GWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPY 405 GW+H+ R A FL + DL + W G + F LLD D + N G W W S + + Sbjct: 351 GWIHHLARHAVACFLTRGDLWISWEEGMKVFEELLLDADWSINAGSWMW-LSCSSFFQQF 409 Query: 406 FRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLD------KNDLSLNYPLP 459 F + P G+R DP G +IR +LP L P +YI+ P + + K + +NYP P Sbjct: 410 FHCYCPVGFGRRTDPNGDYIRRYLPVLRGFPAKYIYDPWNAPEGIQKVAKCLIGINYPKP 469 Query: 460 IVDHKKACHHTLNQYYAAKKQ 480 +V+H +A + + +Q Sbjct: 470 MVNHAEASRLNIERMKQIYQQ 490 >gi|254522734|ref|ZP_05134789.1| deoxyribodipyrimidine photolyase [Stenotrophomonas sp. SKA14] gi|219720325|gb|EED38850.1| deoxyribodipyrimidine photolyase [Stenotrophomonas sp. SKA14] Length = 476 Score = 373 bits (958), Expect = e-101, Method: Composition-based stats. Identities = 153/482 (31%), Positives = 228/482 (47%), Gaps = 16/482 (3%) Query: 1 MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHF 60 MKA +SV LVW R DLR+ DN AL AA +V+ V+I P + + A + Sbjct: 1 MKAM-HVSVALVWFRRDLRLQDNPALQAALEAGH-EVVPVYIHAPHEEGEWVPGAASDAW 58 Query: 61 IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120 + SL + L +G DS+ L + Q +++NR+YE RD Sbjct: 59 RHRSLAALDADLRSRGSSLVLRHG----DSLATLQALVEQIGAEAVYWNRKYEPATQPRD 114 Query: 121 KLLEKRL-QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPV 179 +++ L +H + +S + S+L P I Q YKV+TP+ + ++ + L + P Sbjct: 115 AEIKRTLREHGIDAQSCNGSLLFEPWDIATQQGQPYKVFTPYWRNVLSHWCLPALTAAPK 174 Query: 180 P-AIRLTGPVTPSNIPRFFDYPFQA-IDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIP 237 + + + + + GE AL L F + Y EQRD+P Sbjct: 175 ALTAHKADGLALDELRLAPTLDWDSGFWQHWRPGEAGALEALSVFEDGALRGYREQRDLP 234 Query: 238 AIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAF 297 GTS++SP+L G ++P + + L+ G +L +L WR+F HL+ Sbjct: 235 DRVGTSRMSPHLHFGEIAPWRIAHALEGLRSAGTDADIDG---YLRQLGWRDFAYHLLHH 291 Query: 298 YPSVCMGKPFIPWTEKIEWNKDS-HLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMI 356 +P P ++ W S L W++G TG PI+DA +R+L G+MHNR+RMI Sbjct: 292 FPKTPTDN-LNPRFDRFPWATPSVAQLHDWQRGNTGVPIVDAGLRELWHTGYMHNRVRMI 350 Query: 357 TASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGK 416 AS+L K L W G +F L+D DLA+N GWQW A TG D+ PYFR+FNP Q + Sbjct: 351 VASYLCKHLRAHWLHGARWFWDTLVDADLANNTMGWQWVAGTGADAAPYFRVFNPVTQAE 410 Query: 417 RFDPQGTFIRHWLPELNNVPTQYIHAPHSWLD-KNDLSLNYPL-PIVDHKKACHHTLNQY 474 +FDPQ +I W+PEL +P + AP + YP P+VD L Y Sbjct: 411 KFDPQARYISRWVPELAALPVKARFAPWQHPQLLAAHAPGYPRTPLVDLAVGRDAALQAY 470 Query: 475 YA 476 Sbjct: 471 RQ 472 >gi|85708828|ref|ZP_01039894.1| hypothetical protein NAP1_06295 [Erythrobacter sp. NAP1] gi|85690362|gb|EAQ30365.1| hypothetical protein NAP1_06295 [Erythrobacter sp. NAP1] Length = 463 Score = 373 bits (957), Expect = e-101, Method: Composition-based stats. Identities = 156/485 (32%), Positives = 239/485 (49%), Gaps = 40/485 (8%) Query: 8 SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67 ++WLR DLR+ DN ALY A V+ V++ E H + +++ SL Sbjct: 3 KPQILWLRRDLRMADNPALYHAAKAG--PVVCVYVLDDEAPEHHRMGGASRWWLHHSLES 60 Query: 68 VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127 + KSL + + D++E L + + N YE + +K+L Sbjct: 61 LSKSLGTRNAKLILRRG----DAVEELTTVANAVGADTIHANTHYEPW----WRKAQKKL 112 Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187 + + + +D L P G + + YK+YTPF KAL Q L D+ P L+ P Sbjct: 113 KDEIDLQLYDGVYLFPAGHVTTGSGDPYKIYTPFYKALRQELPPRDVLPEPET---LSSP 169 Query: 188 VTPSNIPRFFDYPFQAIDPMFPIG--------EQNALHILRKFCKEKVYYYVEQRDIPAI 239 D+ P + G E A L ++ ++ V Y ++R+ P++ Sbjct: 170 DDWPASDELADWNLLPTKPDWSGGIADFWEVGEDAAHERLSEW-EDHVADYEDKRNFPSV 228 Query: 240 QGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYP 299 TS+LSP+L G +SP Q W+ LK K G S+ +ELIWR++ +++ YP Sbjct: 229 DKTSRLSPHLHFGEISPVQVWHALKH-------KRSDGWNSFESELIWRDYAANVICEYP 281 Query: 300 SVCMGKPFIPWTEKIEWN------KDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRL 353 + + + +K+EW K + L+ W++G TG+PI+DA MRQL GWMHNR+ Sbjct: 282 AYA-SENYREDYDKLEWRDPDSDEKAAKDLKKWQEGKTGYPIVDAGMRQLWQTGWMHNRV 340 Query: 354 RMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTI 413 RMITASFL+K LL+DWR GE++F L+D D +SN WQW A TG DS + RI P Sbjct: 341 RMITASFLIKHLLIDWRKGEQWFWDCLVDADYSSNAVNWQWNAGTGVDSNMFSRIMAPLT 400 Query: 414 QGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQ 473 Q ++FD +IR ++PEL ++ YIH P + L YP ++ HK+ ++ Sbjct: 401 QSEKFDA-AAYIREYVPELADLDEPYIHDPE---EHGRLPKAYPAKMIAHKEGRERAMSA 456 Query: 474 YYAAK 478 Y K Sbjct: 457 YKDMK 461 >gi|300778354|ref|ZP_07088212.1| possible deoxyribodipyrimidine photo-lyase [Chryseobacterium gleum ATCC 35910] gi|300503864|gb|EFK35004.1| possible deoxyribodipyrimidine photo-lyase [Chryseobacterium gleum ATCC 35910] Length = 431 Score = 373 bits (957), Expect = e-101, Method: Composition-based stats. Identities = 156/474 (32%), Positives = 229/474 (48%), Gaps = 48/474 (10%) Query: 6 AMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQ-HGISARQSHFIYAS 64 + L WLR DLR+ DN L+ A SDA V+ VFI + + R+ +I+ + Sbjct: 2 KSKITLFWLRRDLRLEDNIGLHHALQ-SDAPVMPVFIFDTDILGKLEDKEDRRVDYIHQA 60 Query: 65 LLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLE 124 L + SL + + + IE + + +F NR YE + RDK + Sbjct: 61 LTDINISLKKYHSKLN----TYYGKPIEIFRKLSEEYDIESVFCNRDYEPQAIERDKEIY 116 Query: 125 KRL-QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIR 183 + ++ K+ D V+ I+ Y VYTP+ K + L +++ + Sbjct: 117 YFFTEKKIPFKACKDQVIFDKDQIVKKDGTPYTVYTPYAKKWRELLTPEHYQAVELNFKN 176 Query: 184 LTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS 243 L S+I + F+ D F +L + Y + RD PA+Q T+ Sbjct: 177 LF-SQEYSDILTSKEIGFKKTDFKFS------KPVLDASI---IDDYDQYRDYPALQHTT 226 Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCM 303 QL L G +S R+C + WL+ELIWREF+ ++ +P V + Sbjct: 227 QLGIALRFGTISIRKCVAFALKHNA-----------VWLSELIWREFFMQILYHFPRV-V 274 Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363 + F + I+W + + W +G TG+PI+DA MR+LN G+MHNR+RMI ASFL K Sbjct: 275 HQSFKERYDDIQWRNNEKEFRHWCEGTTGYPIVDAGMRELNQTGYMHNRVRMIVASFLCK 334 Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423 LL+DWR GE YF S+L D DLA+NNG WQWAA +G D+ PYFR+FNPT Q ++FD Sbjct: 335 HLLIDWRWGEAYFASKLNDYDLAANNGNWQWAAGSGCDAAPYFRVFNPTTQTEKFDKDLQ 394 Query: 424 FIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477 +I+ WLPE N + YP PIV+H A L++Y A Sbjct: 395 YIKKWLPEWN-------------------TPEYPSPIVEHTFARERALSEYKKA 429 >gi|80861398|ref|NP_942045.2| cryptochrome-1 [Rattus norvegicus] gi|118572250|sp|Q32Q86|CRY1_RAT RecName: Full=Cryptochrome-1 gi|78395116|gb|AAI07678.1| Cryptochrome 1 (photolyase-like) [Rattus norvegicus] Length = 588 Score = 373 bits (957), Expect = e-101, Method: Composition-based stats. Identities = 126/501 (25%), Positives = 202/501 (40%), Gaps = 38/501 (7%) Query: 7 MSVH-LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASL 65 M V+ + W R LR+ DN AL +D + V+I P + + F+ L Sbjct: 1 MGVNAVHWFRKGLRLHDNPALKECIQGADT-IRCVYILDPWFAGSSNVGINRWRFLLQCL 59 Query: 66 LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125 + +L + + + + +TKL E RD ++K Sbjct: 60 EDLDANLRKLNSRLFVIRG----QPADVFPRLFKEWNITKLSIEYDSEPFGKERDAAIKK 115 Query: 126 RLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLV-QADLRSLPVPAI-- 182 + S L L+ +++ P Q LV + + +P I Sbjct: 116 LATEAGVEVIVRISHTLY---DLDKIIELNGGQPPLTYKRFQTLVSKMEPLEMPADTITS 172 Query: 183 ----RLTGPVTPSNIPR-----FFDYPFQA---IDPMFPIGEQNALHILRKFCKEKVYYY 230 + T P++ + + + F ++P GE AL L + + K + Sbjct: 173 DVIGKCTTPLSDDHDEKYGVPSLEELGFDTDGLSSAVWPGGETEALTRLERHLERKAWVA 232 Query: 231 VEQRDIPAIQGT----SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELI 286 +R + LSPYL G LS R + +L + + + K S S +L+ Sbjct: 233 NFERPRMNANSLLASPTGLSPYLRFGCLSCRLFYFKLTDLYKKVK-KNSSPPLSLYGQLL 291 Query: 287 WREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTI 346 WREF+ P + P +I W+K+ L W +G TGFP IDA M QL Sbjct: 292 WREFFYTAATNNPRFDKMEG-NPICVQIPWDKNPEALAKWAEGRTGFPWIDAIMTQLRQE 350 Query: 347 GWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPY 405 GW+H+ R A FL + DL + W G + F LLD D + N G W W S + + Sbjct: 351 GWIHHLARHAVACFLTRGDLWISWEEGMKVFEELLLDADWSINAGSWMW-LSCSSFFQQF 409 Query: 406 FRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLD------KNDLSLNYPLP 459 F + P G+R DP G +IR +LP L P +YI+ P + + K + +NYP P Sbjct: 410 FHCYCPVGFGRRTDPNGDYIRRYLPVLRGFPAKYIYDPWNAPEGIQKVAKCLIGVNYPKP 469 Query: 460 IVDHKKACHHTLNQYYAAKKQ 480 +V+H +A + + +Q Sbjct: 470 MVNHAEASRLNIERMKQIYQQ 490 >gi|172058000|ref|YP_001814460.1| deoxyribodipyrimidine photo-lyase [Exiguobacterium sibiricum 255-15] gi|171990521|gb|ACB61443.1| Deoxyribodipyrimidine photo-lyase [Exiguobacterium sibiricum 255-15] Length = 451 Score = 373 bits (957), Expect = e-101, Method: Composition-based stats. Identities = 170/470 (36%), Positives = 244/470 (51%), Gaps = 27/470 (5%) Query: 11 LVWLRNDLRITDNKALYAACH----NSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 + W+R+D R+ DN L A + A V VF P+ ++ + + + +L Sbjct: 4 ICWIRSDFRLEDNHMLARAVEYLEKDEQANVEFVFWVNPDYIGEYD---ARQQYFFQALE 60 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQY-EINEVRRDKLLEK 125 K+ + ++ + D + L +N +Y E + R D +++K Sbjct: 61 HFAKNCKTHDMPIRFIEGQEKDF-------LEATEMADVLLFNAEYVEPFKSRDDGIMKK 113 Query: 126 RLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185 R + + D LL P ++ + YKV+TP++ A ++ V Sbjct: 114 RGDKK--TERLLDRHLLHPHAVKKNDGSYYKVFTPYKNAFLKKDVDKPYPVKLNLLKERY 171 Query: 186 GPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245 +N + A D F +GE+ A LR F K + Y EQRD+PA+ GTS + Sbjct: 172 HKRRQNNAFMLDYFKRAASDTDFAVGEETARKRLRSFLKNNLSAYEEQRDLPAVDGTSLM 231 Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305 S YL G + R ++ +++E + G ++L ELIWREFY ++ YP Sbjct: 232 SRYLRTGEIGIRTIFDAVQQE------QDSKGKQTYLTELIWREFYYTILMHYPE-SKRL 284 Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365 P KIEW D +AW +G TG+PI+DAAMRQLNT GWMHNRLRMI ASFL KDL Sbjct: 285 PVNEQYTKIEWETDEKGFKAWAEGKTGYPIVDAAMRQLNTTGWMHNRLRMIVASFLTKDL 344 Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425 LVDW+ GE YF +L+D + ASN GGWQWAAS G D+VPYFR+FNPT Q K+FD GTFI Sbjct: 345 LVDWQKGERYFQQKLVDYEAASNIGGWQWAASVGTDAVPYFRVFNPTTQSKKFDKDGTFI 404 Query: 426 RHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYY 475 R +LPEL ++P IH P K+ +YP+PIV+H A + ++ Sbjct: 405 RTYLPELKDLPKTSIHEPTEQQRKD---YDYPMPIVEHDMARKRAIARFK 451 >gi|73969270|ref|XP_862753.1| PREDICTED: similar to cryptochrome 1 (photolyase-like) isoform 2 [Canis familiaris] Length = 587 Score = 373 bits (957), Expect = e-101, Method: Composition-based stats. Identities = 126/501 (25%), Positives = 203/501 (40%), Gaps = 38/501 (7%) Query: 7 MSVH-LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASL 65 M V+ + W R LR+ DN AL +D + V+I P + + F+ L Sbjct: 1 MGVNAVHWFRKGLRLHDNPALKECIQGADT-IRCVYILDPWFAGSSNVGINRWRFLLQCL 59 Query: 66 LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125 + +L + + + + +TKL E RD ++K Sbjct: 60 EDLDANLRKLNSRLFVIRG----QPADVFPRLFKEWNITKLSIEYDSEPFGKERDAAIKK 115 Query: 126 RLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLV-QADLRSLPVPAI-- 182 + S L L+ +++ P Q L+ + + +PV I Sbjct: 116 LATEAGVEVIVRISHTLY---DLDKIIELNGGQPPLTYKRFQTLISKMEPLEIPVETITS 172 Query: 183 ----RLTGPVTPSNIPR-----FFDYPFQA---IDPMFPIGEQNALHILRKFCKEKVYYY 230 + T P++ + + + F ++P GE AL L + + K + Sbjct: 173 EVVEKCTTPLSDDHDEKYGVPSLEELGFDTDGLPSAVWPGGETEALTRLERHLERKAWVA 232 Query: 231 VEQRDIPAIQGT----SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELI 286 +R + LSPYL G LS R + +L + + + K S S +L+ Sbjct: 233 NFERPRMNANSLLASPTGLSPYLRFGCLSCRLFYFKLTDLYKKVK-KNSSPPLSLYGQLL 291 Query: 287 WREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTI 346 WREF+ P + P +I W+K+ L W +G TGFP IDA M QL Sbjct: 292 WREFFYTAATNNPRFDKMEG-NPICVQIPWDKNPEALAKWAEGRTGFPWIDAIMTQLRQE 350 Query: 347 GWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPY 405 GW+H+ R A FL + DL + W G + F LLD D + N G W W S + + Sbjct: 351 GWIHHLARHAVACFLTRGDLWISWEEGMKVFEELLLDADWSINAGSWMW-LSCSSFFQQF 409 Query: 406 FRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLD------KNDLSLNYPLP 459 F + P G+R DP G +IR +LP L P +YI+ P + + K + +NYP P Sbjct: 410 FHCYCPVGFGRRTDPNGDYIRRYLPVLRGFPAKYIYDPWNAPEGIQKVAKCLIGVNYPKP 469 Query: 460 IVDHKKACHHTLNQYYAAKKQ 480 +V+H +A + + +Q Sbjct: 470 MVNHAEASRLNIERMKQIYQQ 490 >gi|254184299|ref|ZP_04890889.1| deoxyribodipyrimidine photolyase [Burkholderia pseudomallei 1655] gi|184214830|gb|EDU11873.1| deoxyribodipyrimidine photolyase [Burkholderia pseudomallei 1655] Length = 534 Score = 373 bits (957), Expect = e-101, Method: Composition-based stats. Identities = 153/494 (30%), Positives = 240/494 (48%), Gaps = 24/494 (4%) Query: 1 MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHF 60 + ++ +++ +VW R+DLR++D+ AL A S VI V++ + A + Sbjct: 49 LSSSISIAPAVVWFRDDLRVSDHPALMRAAE-SGRPVIGVYVFDERAGGRPLGGAARWW- 106 Query: 61 IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120 ++ SL ++L D + + S+ ++++R+Y + D Sbjct: 107 LHGSL----RALGAALAALGGTLALLRGDEHDTIVSFAAALGAGAVYWSRRYALAARAVD 162 Query: 121 KLLEKRLQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPV 179 ++ L + I ++F+ S+L PG ++N + Y+V++ + +A ++ V A P Sbjct: 163 NAVQTALDAQGIAVETFNASLLFEPGDLVNADGRPYQVFSAYWRAAMRRGVPAPPLGAPR 222 Query: 180 PAIRLTGPVTPSNIPRFFD-YPFQAIDPMFPIG--------EQNALHILRKFCKEKVYYY 230 P + D + P + G E A LR F ++ Y Sbjct: 223 RLNGGALPAALARQCVALDALGLEPTGPDWAGGLRDAWRFGEDAAHRRLRAFVDSRLGGY 282 Query: 231 VEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREF 290 +RD P I TS+LSPY+ G LS RQ W+ + + ++ +L+EL WREF Sbjct: 283 AAERDRPGIASTSRLSPYVRFGNLSARQLWHAAADAYAHGAAT-QADLDKFLSELGWREF 341 Query: 291 YRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMH 350 + +P + + + + W D L AW++G TG+P +DA MR+L GWMH Sbjct: 342 GWTQLHHFPDLPR-RNLRHTLDGMPWRDDPAALAAWRRGATGYPFVDAGMRELWATGWMH 400 Query: 351 NRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFN 410 NR+RM+ ASFLVK LL+DWR GE +F L+D D ASN WQW A G D+ PYFRIFN Sbjct: 401 NRVRMVCASFLVKHLLIDWRAGEAWFWDTLVDADAASNAANWQWVAGCGADAAPYFRIFN 460 Query: 411 PTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKN------DLSLNYPLPIVDHK 464 P QG++FDP G ++R W+PEL +P IH P + L YPLPIV H Sbjct: 461 PVAQGRKFDPDGAYVRRWVPELAGLPPATIHEPWAAPGAQLAAAGVRLGETYPLPIVAHD 520 Query: 465 KACHHTLNQYYAAK 478 A L+ + A + Sbjct: 521 AARRRALDAFGAIR 534 >gi|56552346|ref|YP_163185.1| deoxyribodipyrimidine photo-lyase [Zymomonas mobilis subsp. mobilis ZM4] gi|56543920|gb|AAV90074.1| Deoxyribodipyrimidine photo-lyase [Zymomonas mobilis subsp. mobilis ZM4] Length = 469 Score = 373 bits (957), Expect = e-101, Method: Composition-based stats. Identities = 151/480 (31%), Positives = 245/480 (51%), Gaps = 28/480 (5%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 L+W R+D R+ DN A+ AA + + VI +I + + ++ SLL + + Sbjct: 8 LIWFRHDFRLRDNAAITAAIQSRN-PVICFYIQESADAKTESAAD---WWVAESLLALNR 63 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH- 129 L +KG + D+ + + Q KLF+NR+Y+ D++L+K ++ Sbjct: 64 QLKEKGGQLHLFEG----DAEKIIPEIVQQSHACKLFWNRRYDFKGKETDQILKKSIRAM 119 Query: 130 RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189 + +SF +++L P ++ N Q +++++ + +A+ +++ + P + T + Sbjct: 120 GLEVQSFPNNLLNEPWTVKNDKGQPFRIFSAYWRAVQRHMNIQAVLPCPENWVFSTREIR 179 Query: 190 PSNIPRFFD-YPFQAIDPMFPI--------GEQNALHILRKFCKEKVYYYVEQRDIPAIQ 240 + + D + I GE A L+ F + + +Y ++RD PA Sbjct: 180 HCLGYKDIAILAKETQDSSWKIKLKQSHRFGENEAHKQLKSFIENDLAHYAKERDFPAKD 239 Query: 241 GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPS 300 GTS LS +L G +S +Q W+ + + G +L EL WREF ++ +P Sbjct: 240 GTSLLSAFLRSGQISSKQIWHEVTK------NGSGEGTSKFLEELGWREFAWSVLWEHPD 293 Query: 301 VCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASF 360 + P +K+ W K S LQ WK+G TG+P IDA MR L G+M NRLRM+TASF Sbjct: 294 LNQHN-LRPEFDKMPWKKASDNLQRWKEGQTGYPFIDAGMRALWQTGFMPNRLRMVTASF 352 Query: 361 LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDP 420 LVK LL+DWR G+++F L+D D A N WQW A +G +S PYFRI NP +Q ++FDP Sbjct: 353 LVKHLLIDWREGKKWFAQTLVDYDPACNATNWQWVAGSGIESAPYFRIMNPILQSQKFDP 412 Query: 421 QGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQ 480 G +IR W+ EL +V T +IH P + NYPLPI+ H++ + L + + Sbjct: 413 DGQYIREWVKELADVSTAFIHTPWK---ADKQPANYPLPIIAHEEGRNRALRAWKEIRHA 469 >gi|18413170|ref|NP_567341.1| CRY1 (CRYPTOCHROME 1); ATP binding / blue light photoreceptor/ protein homodimerization/ protein kinase [Arabidopsis thaliana] gi|332278156|sp|Q43125|CRY1_ARATH RecName: Full=Cryptochrome-1; AltName: Full=Blue light photoreceptor; AltName: Full=Protein BLUE LIGHT UNINHIBITED 1; AltName: Full=Protein ELONGATED HYPOCOTYL 4; AltName: Full=Protein OUT OF PHASE 2; Short=OOP2 gi|21700897|gb|AAM70572.1| AT4g08920/hy4 [Arabidopsis thaliana] gi|332657296|gb|AEE82696.1| cryptochrome-1 [Arabidopsis thaliana] Length = 681 Score = 373 bits (957), Expect = e-101, Method: Composition-based stats. Identities = 138/490 (28%), Positives = 226/490 (46%), Gaps = 25/490 (5%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 +VW R DLR+ DN AL AA VIA+F+ PE+ + ++ SL Q+ Sbjct: 15 IVWFRRDLRVEDNPALAAAVRAG--PVIALFVWAPEEEGHYHPGRVSRWWLKNSLAQLDS 72 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL-QH 129 SL G + + DS+ L +++F+N Y+ + RD + L Sbjct: 73 SLRSLGTCLITKRST---DSVASLLDVVKSTGASQIFFNHLYDPLSLVRDHRAKDVLTAQ 129 Query: 130 RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189 + +SF+ +L P + + + + ++ F + + + LP I Sbjct: 130 GIAVRSFNADLLYEPWEVTDELGRPFSMFAAFWERCLSMPYDPESPLLPPKKIISGDVSK 189 Query: 190 PSNIPRFFDYPFQA-----IDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244 P F+ + + + G N L F + Y + R TS Sbjct: 190 CVADPLVFEDDSEKGSNALLARAWSPGWSNGDKALTTFINGPLLEYSKNRRKADSATTSF 249 Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFS----WLNELIWREFYRHLMAFYPS 300 LSP+L G +S R+ ++ ++ + V + +L + RE+ R++ +P Sbjct: 250 LSPHLHFGEVSVRKVFHLVRIKQVAWANEGNEAGEESVNLFLKSIGLREYSRYISFNHP- 308 Query: 301 VCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASF 360 +P + + W D + +AW+QG TG+P++DA MR+L GW+H+R+R++ +SF Sbjct: 309 YSHERPLLGHLKFFPWAVDENYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSF 368 Query: 361 LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDP 420 VK L + WR G +YF LLD DL S+ GWQ+ T DS + RI NP +G +FDP Sbjct: 369 FVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYITGTLPDSREFDRIDNPQFEGYKFDP 428 Query: 421 QGTFIRHWLPELNNVPTQYIHAPHSWLDKN------DLSLNYPLPIVDHKKACHH---TL 471 G ++R WLPEL+ +PT +IH P + + +L NYPLPIV +A L Sbjct: 429 NGEYVRRWLPELSRLPTDWIHHPWNAPESVLQAAGIELGSNYPLPIVGLDEAKARLHEAL 488 Query: 472 NQYYAAKKQS 481 +Q + + S Sbjct: 489 SQMWQLEAAS 498 >gi|161138116|gb|ABX58029.1| cryptochrome 2 [Triticum aestivum] Length = 650 Score = 372 bits (956), Expect = e-101, Method: Composition-based stats. Identities = 124/492 (25%), Positives = 217/492 (44%), Gaps = 31/492 (6%) Query: 10 HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69 +VW R DLRI DN A D V+ VFI P + + ++ SL + Sbjct: 7 TVVWFRRDLRIDDNP--ALAAAARDGAVLPVFIWCPAEEGRFYTGRCSRWWLKESLAHLA 64 Query: 70 KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLE-KRLQ 128 +SL G + ++ L T++ Y Y+ + RD ++ + L Sbjct: 65 RSLQALGCPLVLIRAQT---TLAALLQCVDSIGATRVVYIHLYDPISLVRDDKIKNELLG 121 Query: 129 HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188 + +SF+ +L P + + + + + + ++ + P + ++G + Sbjct: 122 LGISMQSFNGDLLYEPWEVYDENGLPFTTFKKYWEKCMKLHIDISPSLAPWRLVPVSG-I 180 Query: 189 TPSNIPRFFDYPFQA----------IDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPA 238 + ++ + + G +NA L F + Y + R A Sbjct: 181 ENICSSSIDNLGLESSKDEESSNALLSRAWSPGWRNAEKTLEDFVSHGLLDYSKDRMKVA 240 Query: 239 IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFS----WLNELIWREFYRHL 294 TS SPYL G +S R+ + ++ + + + KSGA +L + RE+ R+L Sbjct: 241 GTTTSLSSPYLHYGEVSVRKIYQLVRVQQIKWENEGKSGAGESDNLFLLSIGLREYSRYL 300 Query: 295 MAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLR 354 +P + + + W D ++W+QG TG+P++DA MR+L GW HNR+R Sbjct: 301 CFNFP-FTRERSLLGNLKHYPWRADEDRFKSWRQGMTGYPLVDAGMRELWATGWTHNRIR 359 Query: 355 MITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQ 414 +I +SF VK L + W G +YF LLD D+ S+ GWQ+ + + D R+ NP +Q Sbjct: 360 VIVSSFAVKFLQIPWTWGMKYFWDVLLDADIESDILGWQYISGSLPDGHELGRLDNPEVQ 419 Query: 415 GKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDK------NDLSLNYPLPIVDHKKACH 468 G+++DP G ++R W+PEL +P ++IH P +L NYP+PIV+ A Sbjct: 420 GQKYDPDGEYVRTWIPELARMPGEWIHHPWDAPSSILEVAGVELGFNYPMPIVELHTARE 479 Query: 469 ---HTLNQYYAA 477 ++ + Sbjct: 480 CLDDAISTMWQL 491 >gi|254191331|ref|ZP_04897835.1| deoxyribodipyrimidine photolyase [Burkholderia pseudomallei Pasteur 52237] gi|157939003|gb|EDO94673.1| deoxyribodipyrimidine photolyase [Burkholderia pseudomallei Pasteur 52237] Length = 534 Score = 372 bits (956), Expect = e-101, Method: Composition-based stats. Identities = 153/494 (30%), Positives = 240/494 (48%), Gaps = 24/494 (4%) Query: 1 MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHF 60 + ++ +++ +VW R+DLR++D+ AL A S VI V++ + A + Sbjct: 49 LSSSISIAPAVVWFRDDLRVSDHPALMRAAE-SGRPVIGVYVFDERAGGRPLGGAARWW- 106 Query: 61 IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120 ++ SL ++L D + + S+ ++++R+Y + D Sbjct: 107 LHGSL----RALGAALAALGGTLALLRGDEHDTIVSFAAALGAGAVYWSRRYALAARAVD 162 Query: 121 KLLEKRLQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPV 179 ++ L + I ++F+ S+L PG ++N + Y+V++ + +A ++ V A P Sbjct: 163 NAVQTALDAQGIAVETFNASLLFEPGDLVNADGRPYQVFSAYWRAAMRRGVPAPPLGAPR 222 Query: 180 PAIRLTGPVTPSNIPRFFD-YPFQAIDPMFPIG--------EQNALHILRKFCKEKVYYY 230 P + D + P + G E A LR F ++ Y Sbjct: 223 RLNGGALPAALARQCVALDALGLEPTGPDWAGGLRDAWRFGEDAAHRRLRAFVDSRLGGY 282 Query: 231 VEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREF 290 +RD P I TS+LSPY+ G LS RQ W+ + + ++ +L+EL WREF Sbjct: 283 AAERDRPGIASTSRLSPYVRFGNLSARQLWHAAADAYAHGAAT-QADLDKFLSELGWREF 341 Query: 291 YRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMH 350 + +P + + + + W D L AW++G TG+P +DA MR+L GWMH Sbjct: 342 GWTQLHHFPDLPR-RNLRHTLDGMPWRDDPAALAAWRRGATGYPFVDAGMRELWATGWMH 400 Query: 351 NRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFN 410 NR+RM+ ASFLVK LL+DWR GE +F L+D D ASN WQW A G D+ PYFRIFN Sbjct: 401 NRVRMVCASFLVKHLLIDWRAGEAWFWDTLVDADAASNAANWQWVAGCGADAAPYFRIFN 460 Query: 411 PTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKN------DLSLNYPLPIVDHK 464 P QG++FDP G ++R W+PEL +P IH P + L YPLPIV H Sbjct: 461 PVAQGRKFDPDGAYVRRWVPELAGLPPATIHEPWAAPGAQLAAAGVRLGETYPLPIVAHD 520 Query: 465 KACHHTLNQYYAAK 478 A L+ + A + Sbjct: 521 AARRRALDAFGAIR 534 >gi|251772673|gb|EES53237.1| Deoxyribodipyrimidine photo-lyase [Leptospirillum ferrodiazotrophum] Length = 468 Score = 372 bits (956), Expect = e-101, Method: Composition-based stats. Identities = 154/476 (32%), Positives = 229/476 (48%), Gaps = 21/476 (4%) Query: 10 HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69 +VW R++LR++DN+ L A V+ V++ P + + SL ++ Sbjct: 3 SIVWFRHNLRLSDNRPLSLAAKEG--AVLPVYVHDPTL--SLFPDRVRQRWRKRSLWELD 58 Query: 70 KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL-Q 128 +SL + G S+ E L + R +++ R + ++ LE L + Sbjct: 59 RSLRKLGNRLHVFSGSSC----EILLKVATRVRAERVYAFRGLTGEDRALEERLENELRK 114 Query: 129 HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188 V L PP +K++TP+ + Q+ + P L Sbjct: 115 AGVSLHLTGFDTLYPPDLAAEGRSSPWKIFTPYHRFCRQSFLPEHPLPAPSRVDSLPSLA 174 Query: 189 TPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPY 248 + F GE A+H LR+F + + Y +RD PA +GTS+LSP+ Sbjct: 175 SLGGEEEVGGAGEVVSFVGFEPGEAGAMHCLREFLENSLAGYASRRDYPAEEGTSRLSPH 234 Query: 249 LSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFI 308 L+ G +S R+ RL+E P +L EL WREF HL+ F+P + + P Sbjct: 235 LASGEISVREIVQRLQE-----SDAPGKDREKFLEELGWREFSAHLLFFHPEMLVD-PLK 288 Query: 309 PWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAM-RQLNTIGWMHNRLRMITASFLVKDLLV 367 +EW D AWK+G TGFP++DA M R+L GWMHNR+RM+ ASFLVK+L V Sbjct: 289 KEWATMEWTSDEAGFLAWKEGRTGFPLVDAGMMRELAETGWMHNRVRMVAASFLVKNLGV 348 Query: 368 DWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRH 427 W+ G +F +LLD D A+N WQW A G D+ PYFRIFNP +QG+R+DP G ++R Sbjct: 349 SWQSGSRWFAERLLDYDPANNAASWQWVAGCGIDAAPYFRIFNPVLQGQRYDPHGKYVRR 408 Query: 428 WLPELNNVPTQYIHAPHSWLDKND-----LSLNYPLPIVDHKKACHHTLNQYYAAK 478 +LPEL+ +P + IH P D S YP PIVD ++ L +Y + Sbjct: 409 FLPELSALPDEKIHLPRKQSSSADWERPASSQGYPEPIVDLSESREAALRRYRRFR 464 >gi|304571302|dbj|BAJ15769.1| cryptochrome1 [Cardamine nipponica] gi|304571304|dbj|BAJ15770.1| cryptochrome1 [Cardamine nipponica] gi|304571308|dbj|BAJ15772.1| cryptochrome1 [Cardamine nipponica] gi|304571310|dbj|BAJ15773.1| cryptochrome1 [Cardamine nipponica] gi|304571312|dbj|BAJ15774.1| cryptochrome1 [Cardamine nipponica] gi|304571322|dbj|BAJ15779.1| cryptochrome1 [Cardamine nipponica] gi|304571324|dbj|BAJ15780.1| cryptochrome1 [Cardamine nipponica] Length = 693 Score = 372 bits (956), Expect = e-101, Method: Composition-based stats. Identities = 138/492 (28%), Positives = 233/492 (47%), Gaps = 27/492 (5%) Query: 10 HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69 +VW R DLR+ DN AL AA VIA+F+ PE+ + ++ SL Q+ Sbjct: 2 SIVWFRRDLRVEDNPALAAAVRAG--PVIALFVWAPEEEGHYHPGRVSRWWLKNSLAQLD 59 Query: 70 KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL-Q 128 SL G + + DS+ L +++F+N Y+ + RD + L Sbjct: 60 SSLRSLGTCLITKRST---DSVASLLDVVKSTGASQIFFNHLYDPLSLVRDHRAKDVLTA 116 Query: 129 HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188 + +SF+ +L P + + + + ++ F + + + LP P ++G V Sbjct: 117 QGIAVRSFNADLLYEPWEVTDELGRPFSMFAAFWERCLSMPYDPESPLLP-PKKIISGDV 175 Query: 189 TP--SNIPRFFDYPFQAIDPM----FPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGT 242 + S+ F D + + + + G NA L F + Y + R T Sbjct: 176 SKCVSDPLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSATT 235 Query: 243 SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFS----WLNELIWREFYRHLMAFY 298 S LSP+ G +S R+ ++ ++ + V + +L + RE+ R++ + Sbjct: 236 SFLSPHFHFGEVSVRKVFHLVRIKQVAWANEGNQAGEESVNLFLKSIGLREYSRYISFNH 295 Query: 299 PSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITA 358 P +P + + W D + +AW+QG TG+P++DA MR+L GW+H+R+R++ + Sbjct: 296 P-YSHERPLLGHLKFFPWAVDENYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVS 354 Query: 359 SFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRF 418 SF VK L + WR G +YF LLD DL S+ GWQ+ T DS + RI NP +G +F Sbjct: 355 SFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYITGTLPDSREFDRIDNPQFEGYKF 414 Query: 419 DPQGTFIRHWLPELNNVPTQYIHAPHSWLDKN------DLSLNYPLPIVDHKKACHH--- 469 DP G ++R WLPEL+ +PT++IH P + + +L NYP P++ +A Sbjct: 415 DPNGEYVRRWLPELSRLPTEWIHHPWNAPESVLQAAGIELGSNYPRPVLGLDEAKARLHE 474 Query: 470 TLNQYYAAKKQS 481 L+Q + + S Sbjct: 475 ALSQMWQLEAAS 486 >gi|238757988|ref|ZP_04619169.1| Deoxyribodipyrimidine photo-lyase [Yersinia aldovae ATCC 35236] gi|238703742|gb|EEP96278.1| Deoxyribodipyrimidine photo-lyase [Yersinia aldovae ATCC 35236] Length = 362 Score = 372 bits (956), Expect = e-101, Method: Composition-based stats. Identities = 200/361 (55%), Positives = 250/361 (69%), Gaps = 6/361 (1%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M+ HLVW RNDLRITDN AL AAC + A+VIA+FIATP+QW H ++ RQ+ F+ +L Sbjct: 1 MATHLVWFRNDLRITDNLALNAACQDPQARVIALFIATPKQWAAHDMAPRQAAFLQQNLQ 60 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 +Q +L+ K I YHQC +F D++ WLD++C QQ+V LFYN+QYE+NE RRD+ L R Sbjct: 61 LLQSALAAKSIALHYHQCDDFQDAVIWLDNFCQQQQVDALFYNQQYELNERRRDEALAVR 120 Query: 127 LQHR-----VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPA 181 L + C F DS+LLPPGS+L +MYKV+TPFR+A IQ L+ +D +P P Sbjct: 121 LNSGANGRNITCHRFHDSLLLPPGSVLTGNNEMYKVFTPFRRAFIQRLLMSDNACVPAPI 180 Query: 182 IRLTGPVTPSNIPRFFDYPFQAIDP-MFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ 240 R S P FDYP Q +DP +FP GE AL LR FC+E+V Y +QRD PA+ Sbjct: 181 ARDNMAAATSFPPLLFDYPQQPVDPILFPAGEDAALQRLRSFCREQVQDYHQQRDFPAVS 240 Query: 241 GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPS 300 GTS LSPYL++GVLSPRQC+NRL+ E L P SGAF+WLNELIWREFY HL+ YP Sbjct: 241 GTSCLSPYLALGVLSPRQCFNRLRAECPAGLENPDSGAFTWLNELIWREFYCHLLVAYPR 300 Query: 301 VCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASF 360 +C PFI WT+ + WN L AW+QG TG+PI+DAAMRQLN GWMHNRLRMI+ASF Sbjct: 301 LCQHHPFIGWTDAVIWNHSELQLTAWQQGRTGYPIVDAAMRQLNETGWMHNRLRMISASF 360 Query: 361 L 361 Sbjct: 361 F 361 >gi|304571314|dbj|BAJ15775.1| cryptochrome1 [Cardamine nipponica] Length = 693 Score = 372 bits (956), Expect = e-101, Method: Composition-based stats. Identities = 138/492 (28%), Positives = 233/492 (47%), Gaps = 27/492 (5%) Query: 10 HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69 +VW R DLR+ DN AL AA VIA+F+ PE+ + ++ SL Q+ Sbjct: 2 SIVWFRRDLRVEDNPALAAAVRAG--PVIALFVWAPEEEGHYHPGRVSRWWLKNSLAQLD 59 Query: 70 KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL-Q 128 SL G + + DS+ L +++F+N Y+ + RD + L Sbjct: 60 SSLRSLGTCLITKRST---DSVASLLDVVKSTGASQIFFNHLYDPLSLVRDHRAKDVLTA 116 Query: 129 HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188 + +SF+ +L P + + + + ++ F + + + LP P ++G V Sbjct: 117 QGIAVRSFNADLLYEPWEVTDELGRPFSMFAAFWERCLSMPYDPESPLLP-PKKIISGDV 175 Query: 189 TP--SNIPRFFDYPFQAIDPM----FPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGT 242 + S+ F D + + + + G NA L F + Y + R T Sbjct: 176 SKCVSDPLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSATT 235 Query: 243 SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFS----WLNELIWREFYRHLMAFY 298 S LSP+ G +S R+ ++ ++ + V + +L + RE+ R++ + Sbjct: 236 SFLSPHFHFGEVSVRKVFHLVRIKQVAWANEGNQAGEESVNLFLKSIGLREYSRYISFNH 295 Query: 299 PSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITA 358 P +P + + W D + +AW+QG TG+P++DA MR+L GW+H+R+R++ + Sbjct: 296 P-YSHERPLLGHLKFFPWAVDENYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVS 354 Query: 359 SFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRF 418 SF VK L + WR G +YF LLD DL S+ GWQ+ T DS + RI NP +G +F Sbjct: 355 SFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYITGTLPDSREFDRIDNPQFEGYKF 414 Query: 419 DPQGTFIRHWLPELNNVPTQYIHAPHSWLDKN------DLSLNYPLPIVDHKKACHH--- 469 DP G ++R WLPEL+ +PT++IH P + + +L NYP P++ +A Sbjct: 415 DPNGEYVRRWLPELSRLPTEWIHHPWNAPESVLQAAGIELGSNYPRPVLGLDEAKARLHE 474 Query: 470 TLNQYYAAKKQS 481 L+Q + + S Sbjct: 475 ALSQMWQLEAAS 486 >gi|218437350|ref|YP_002375679.1| cryptochrome, DASH family [Cyanothece sp. PCC 7424] gi|218170078|gb|ACK68811.1| cryptochrome, DASH family [Cyanothece sp. PCC 7424] Length = 488 Score = 372 bits (956), Expect = e-101, Method: Composition-based stats. Identities = 137/491 (27%), Positives = 232/491 (47%), Gaps = 37/491 (7%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQ-----HGISARQSHFIYASL 65 L+W RNDLR+ D++AL A A +I + Q+R ++ F+ S+ Sbjct: 7 LIWFRNDLRLHDHEALNEALQE-KADIIPFYCFDERQFRTTSYGFPKTGKFRAQFLLESV 65 Query: 66 LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125 +++SL + G Q + +T L+Y+ + E+ +K L+K Sbjct: 66 ADLRQSLQKLGSNLVIRQGLPEL----IIPQIAQPLNITALYYHEEVTAEELTVEKRLKK 121 Query: 126 RLQH-RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL 184 L + +SF + L P ++ Q+ +++T FRK + + A + +PA + Sbjct: 122 ALAKCNIKVESFWGTTLYHPDNLPFEIYQLPELFTNFRKQVERKSTVAPV----LPAPKS 177 Query: 185 TGPVTPSNIPRFFDYPFQAIDPM---------FPIGEQNALHILRKFCKEKV--YYYVEQ 233 P+ +I ++P F GE L+ + +K Y E Sbjct: 178 LPPLPDLDIGNLPSLSELGLEPAVFEPRGVLKFQGGEIAGRERLQDYIWQKNCLKNYKET 237 Query: 234 RD-IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYR 292 R+ + +S+ SP+L+ G LSPR + +++ + + + EL+WR+F+R Sbjct: 238 RNEMLGADYSSKFSPWLAHGCLSPRYIYEEVQKYEHQRV--KNDSTYWLIFELLWRDFFR 295 Query: 293 HLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNR 352 + A + + + + + W +D + W++G TG+P++DA MR+L T G+M NR Sbjct: 296 FICAKHGNKIFFSQGLQGID-LPWKEDWQRFKLWQEGKTGYPLVDANMRELATTGFMSNR 354 Query: 353 LRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPT 412 R ASFL K+L ++W +G E+F S L+D D+ SN G W + A GND+ FR FN Sbjct: 355 GRQNVASFLTKNLGINWLMGAEWFESLLIDYDVCSNYGNWNYTAGVGNDARG-FRYFNIP 413 Query: 413 IQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND------LSLNYPLPIVDHKKA 466 Q K +DP+G ++R+WLPEL VP IH P + L ++YP P+VD K+ Sbjct: 414 KQSKDYDPKGDYLRYWLPELALVPGDKIHEPWKLSQEEQKRYRVRLGVDYPHPVVDFFKS 473 Query: 467 CHHTLNQYYAA 477 Y+ A Sbjct: 474 VKGNEALYHRA 484 >gi|319954856|ref|YP_004166123.1| deoxyribodipyrimidine photo-lyase [Cellulophaga algicola DSM 14237] gi|319423516|gb|ADV50625.1| Deoxyribodipyrimidine photo-lyase [Cellulophaga algicola DSM 14237] Length = 436 Score = 372 bits (955), Expect = e-101, Method: Composition-based stats. Identities = 145/474 (30%), Positives = 212/474 (44%), Gaps = 47/474 (9%) Query: 8 SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67 + + W R DLR+ DN LY A D V+ +FI E + FI+ L Sbjct: 4 KISIFWFRRDLRLEDNVGLYQALK-GDYPVLPIFIFDKEILENLPKDDARVSFIFEQLES 62 Query: 68 VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127 ++ +L ++ + E S V ++ N YE RD ++ L Sbjct: 63 MRNTLQEE---VESSLAIYHGTPQEIFKSLIKDYEVQAVYTNHDYEPYATERDTKIQDYL 119 Query: 128 QH-RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 + +V S+ D V+ G +L Y VYTP++ Sbjct: 120 KDKQVDFHSYKDQVIFEKGDVLKDDGDPYVVYTPYKNKWKTIFDAKKDLETYNTKKYFKN 179 Query: 187 PVTPSNIPRFF--DYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ-GTS 243 + S +P D F+ P + + Y + R+ PAI+ GTS Sbjct: 180 FIAHSRLPNLSLSDMGFETSKIKVPNYSAG---------SKVIQNYEDTRNYPAIENGTS 230 Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCM 303 +L P+L G +S R+ R E ++ + +ELIWREF+ ++ +P Sbjct: 231 RLGPHLRFGSVSIREITKRAIAEKNEV----------FWSELIWREFFMQILWHFPHTTK 280 Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363 F P ++IEW + + WK G TG+ ++DA MR+LNT G+MHNR+RM+ ASFL K Sbjct: 281 -NAFRPKYDRIEWRNNEAEFEKWKNGETGYALVDAGMRELNTTGYMHNRVRMLVASFLCK 339 Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423 LL+DWR GE YF +LLD DL++N G WQWAA +G D+ PYFRIFNP Q +FD Q Sbjct: 340 HLLIDWRWGEAYFAEKLLDFDLSANVGNWQWAAGSGVDAAPYFRIFNPMTQVDKFDKQKE 399 Query: 424 FIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477 +I W+ +L + YP +VDHK A L Y A Sbjct: 400 YINTWVSDLQELS-------------------YPDKMVDHKMARERCLKTYKEA 434 >gi|304571318|dbj|BAJ15777.1| cryptochrome1 [Cardamine nipponica] gi|304571320|dbj|BAJ15778.1| cryptochrome1 [Cardamine nipponica] Length = 693 Score = 372 bits (955), Expect = e-101, Method: Composition-based stats. Identities = 138/492 (28%), Positives = 233/492 (47%), Gaps = 27/492 (5%) Query: 10 HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69 +VW R DLR+ DN AL AA VIA+F+ PE+ + ++ SL Q+ Sbjct: 2 SIVWFRRDLRVEDNPALAAAVRAG--PVIALFVWAPEEEGHYHPGRVSRWWLKNSLAQLD 59 Query: 70 KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL-Q 128 SL G + + DS+ L +++F+N Y+ + RD + L Sbjct: 60 SSLRSLGTCLITKRST---DSVASLLDVVKSTGASQIFFNHLYDPLSLVRDHRAKDVLTA 116 Query: 129 HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188 + +SF+ +L P + + + + ++ F + + + LP P ++G V Sbjct: 117 QGIAVRSFNADLLYEPWEVTDELGRPFSMFAAFWERCLSMPYDPESPLLP-PKKIISGDV 175 Query: 189 TP--SNIPRFFDYPFQAIDPM----FPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGT 242 + S+ F D + + + + G NA L F + Y + R T Sbjct: 176 SKCVSDPLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSATT 235 Query: 243 SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFS----WLNELIWREFYRHLMAFY 298 S LSP+ G +S R+ ++ ++ + V + +L + RE+ R++ + Sbjct: 236 SFLSPHFHFGEVSVRKVFHLVRIKQVAWANEGNQAGEESVNLFLKSIGLREYSRYISFNH 295 Query: 299 PSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITA 358 P +P + + W D + +AW+QG TG+P++DA MR+L GW+H+R+R++ + Sbjct: 296 P-YSHERPLLGHLKFFPWAVDENYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVS 354 Query: 359 SFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRF 418 SF VK L + WR G +YF LLD DL S+ GWQ+ T DS + RI NP +G +F Sbjct: 355 SFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYITGTLPDSREFDRIDNPQFEGYKF 414 Query: 419 DPQGTFIRHWLPELNNVPTQYIHAPHSWLDKN------DLSLNYPLPIVDHKKACHH--- 469 DP G ++R WLPEL+ +PT++IH P + + +L NYP P++ +A Sbjct: 415 DPNGEYVRRWLPELSRLPTEWIHHPWNTPESVLQAAGIELGSNYPRPVLGLDEAKARLHE 474 Query: 470 TLNQYYAAKKQS 481 L+Q + + S Sbjct: 475 ALSQMWQLEAAS 486 >gi|38037416|gb|AAR08429.1| cryptochrome 1 [Orobanche minor] Length = 679 Score = 372 bits (955), Expect = e-101, Method: Composition-based stats. Identities = 139/494 (28%), Positives = 226/494 (45%), Gaps = 27/494 (5%) Query: 3 ATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIY 62 T+ +VW R DLR+ DN AL A V+ +FI PE+ + ++ Sbjct: 2 GTSGGGCSIVWFRRDLRVEDNPALAAGVRAG--AVLPLFIWAPEEEGHYYPGRVSRWWLK 59 Query: 63 ASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKL 122 SL + SL G + + DS+ L ++F+N Y+ + RD Sbjct: 60 QSLSHLDISLRSLGTSLVTRRST---DSVSSLLEVIKLTGAKQIFFNHLYDPISLVRDHR 116 Query: 123 LEKRL-QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPA 181 ++ L V +SF+ +L P + + Q + + F + + + LP P Sbjct: 117 AKEVLTAEGVAVRSFNADLLYEPWEVHDQEGQPFTTFAGFWERCLSMPYDPEAPLLP-PK 175 Query: 182 IRLTGPVT--PSNIPRFFDYPFQAIDPM----FPIGEQNALHILRKFCKEKVYYYVEQRD 235 ++G ++ S+ F D + + + + G NA L F + Y + R Sbjct: 176 RIISGDLSRCTSDTLVFEDESEKGSNALLARAWSPGWSNADKALTVFTNGPLLEYSKNRR 235 Query: 236 IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFS----WLNELIWREFY 291 TS LSP+L G +S R+ ++ + + V + +L + RE+ Sbjct: 236 KADSATTSFLSPHLHFGEVSVRKIFHLARIKQVLWANEGNKAGEESINLFLKSIGLREYS 295 Query: 292 RHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHN 351 R++ +P +P + + W D +AW+QG TG+P++DA MR+L GW+H+ Sbjct: 296 RYMSFNHP-YSHERPLLGHLKYFPWVIDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHD 354 Query: 352 RLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNP 411 R+R++ +SF VK L + WR G +YF LLD DL S+ GWQ+ + + D RI NP Sbjct: 355 RIRVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGSLPDGCELDRIDNP 414 Query: 412 TIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKN------DLSLNYPLPIV--DH 463 G + DP G ++R WLPEL +PT++IH P + + +L NYPLPIV D Sbjct: 415 QFDGYKCDPNGEYVRRWLPELARLPTEWIHHPWNTPESVLQAAGIELGSNYPLPIVGIDT 474 Query: 464 KKAC-HHTLNQYYA 476 KA L+Q + Sbjct: 475 AKARLQEALSQMWQ 488 >gi|442529|gb|AAB28724.1| flavin-type blue-light photoreceptor [Arabidopsis thaliana] Length = 681 Score = 372 bits (955), Expect = e-101, Method: Composition-based stats. Identities = 138/490 (28%), Positives = 226/490 (46%), Gaps = 25/490 (5%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 +VW R DLR+ DN AL AA VIA+F+ PE+ + ++ SL Q+ Sbjct: 15 IVWFRRDLRVEDNPALAAAVRAG--PVIALFVWAPEEEGHYHPGRVSRWWLKNSLAQLDS 72 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL-QH 129 SL G + + DS+ L +++F+N Y+ + RD + L Sbjct: 73 SLRSLGTCLITKRST---DSVASLLDVVKSTGASQIFFNHLYDPLSLVRDHRAKDVLTAQ 129 Query: 130 RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189 + +SF+ +L P + + + + ++ F + + + LP I Sbjct: 130 GIAVRSFNADLLYEPWEVTDELGRPFSMFAAFWERCLSMPYDPESPLLPPKKIISGDVSK 189 Query: 190 PSNIPRFFDYPFQA-----IDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244 P F+ + + + G N L F + Y + R TS Sbjct: 190 CVADPLVFEDDSEKGSNALLARAWSPGWSNGDKALTTFINGPLLEYSKNRRKADSATTSF 249 Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFS----WLNELIWREFYRHLMAFYPS 300 LSP+L G +S R+ ++ ++ + V + +L + RE+ R++ +P Sbjct: 250 LSPHLHFGEVSVRKVFHLVRIKQVAWANEGNEAGEESVNLFLKSIGLREYSRYISFNHP- 308 Query: 301 VCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASF 360 +P + + W D + +AW+QG TG+P++DA MR+L GW+H+R+R++ +SF Sbjct: 309 YSHERPLLGHLKFFPWAVDENYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSF 368 Query: 361 LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDP 420 VK L + WR G +YF LLD DL S+ GWQ+ T DS + RI NP +G +FDP Sbjct: 369 FVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYITGTLPDSREFDRIDNPQFEGYKFDP 428 Query: 421 QGTFIRHWLPELNNVPTQYIHAPHSWLDKN------DLSLNYPLPIVDHKKACHH---TL 471 G ++R WLPEL+ +PT +IH P + + +L NYPLPIV +A L Sbjct: 429 NGEYVRRWLPELSRLPTDWIHHPWNAPESVLQAAGIELGSNYPLPIVGLDEAKARLHEAL 488 Query: 472 NQYYAAKKQS 481 +Q + + S Sbjct: 489 SQMWQLEAAS 498 >gi|163746389|ref|ZP_02153747.1| deoxyribodipyrimidine photolyase, putative [Oceanibulbus indolifex HEL-45] gi|161380274|gb|EDQ04685.1| deoxyribodipyrimidine photolyase, putative [Oceanibulbus indolifex HEL-45] Length = 473 Score = 372 bits (954), Expect = e-101, Method: Composition-based stats. Identities = 154/476 (32%), Positives = 228/476 (47%), Gaps = 27/476 (5%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 +VW R DLR++D+ AL AAC VI +FI + + A + +L + Sbjct: 8 IVWFRRDLRLSDHPALAAACKTG-RPVIPLFIHDN---QSDALGAAPKFRLGLALACLGD 63 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH- 129 +L +KG + D+++ L Q ++++R Y+ + RD ++ L+ Sbjct: 64 TLKEKGSRLILRRG----DALDVLRDVIEQTGAGAVYWSRLYDPAAIDRDTKVKDALKED 119 Query: 130 RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP-- 187 V SF ++ P ++ YKV+TP+ K++ V L + P Sbjct: 120 GVEACSFAGHLMFEPWTVETKTGGFYKVFTPYWKSVRGRDVAEPLATPSEIRAPEDWPDS 179 Query: 188 --VTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245 + + + P +GE A L F + V Y E RD+P GTS L Sbjct: 180 DVLDDWQMDAEMQRGRDVVRPYVRLGEAAAQARLGSFIADIVDGYDESRDMPGEDGTSGL 239 Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305 S LS+G +SP CW+ + + K GA ++L EL WREF HLM P + + + Sbjct: 240 SENLSLGEISPAHCWHAGQRAMQE----GKRGAETFLKELAWREFAYHLMYHTPRI-LDQ 294 Query: 306 PFIPWTEKIEWNKDS--HLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363 + + WN+D + AWKQG TG P +DAAMR+L G MHNR RMI AS+L K Sbjct: 295 NWREEWQAFPWNEDERCAEVLAWKQGRTGMPFVDAAMRELQVTGRMHNRGRMIVASYLTK 354 Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423 L+ WRIG+++F L+D D A+N GWQWAA +G D+ P+FRIFNP Q RFD Sbjct: 355 HLMCHWRIGQKWFEEHLIDWDPANNAMGWQWAAGSGPDATPFFRIFNPETQLDRFDKGRN 414 Query: 424 FIRHWLPELNNVPTQYIHA-----PHSWLDKNDLSLNYPLPIVDHKKACHHTLNQY 474 + R W+ E P++ P W + D +YP PIVD + L+ Y Sbjct: 415 YTRRWIAEGREKPSEDALEYFDAIPRRWGRRPD--DDYPDPIVDLSEGRARALDAY 468 >gi|78217441|gb|ABB36796.1| cryptochrome 1 [Nicotiana sylvestris] Length = 681 Score = 372 bits (954), Expect = e-100, Method: Composition-based stats. Identities = 140/491 (28%), Positives = 224/491 (45%), Gaps = 25/491 (5%) Query: 5 TAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYAS 64 + +VW R DLR+ DN AL A VIAVFI PE+ + ++ S Sbjct: 2 SGSGCSIVWFRRDLRVEDNPALAAGVRAG--AVIAVFIWAPEEEGHYYPGRVSRWWLKQS 59 Query: 65 LLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLE 124 L + SL G + + DSI L T+LF+N Y+ + RD + Sbjct: 60 LAHLDSSLKSLGTSLVTKRST---DSISSLLEIVKSTGATQLFFNHLYDPISLVRDHRAK 116 Query: 125 KRLQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIR 183 + L + I +SF+ +L P + + + + ++ F + + + LP I Sbjct: 117 EVLTAQGISVRSFNADLLYEPWEVNDEEGRPFTTFSAFWEKCLSMPYDPEAPLLPPKRII 176 Query: 184 LTGPVTPSNIPRFFDYPFQA-----IDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPA 238 S+ F+ + + + G NA L F + Y + R Sbjct: 177 PGDASRCSSDSLVFEDESEKGSNALLARAWSPGWSNADKALTTFVNGPLLEYSQNRRKAD 236 Query: 239 IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFS----WLNELIWREFYRHL 294 TS LSP+L G +S R+ ++ ++ + V + +L + RE+ R++ Sbjct: 237 SATTSFLSPHLHFGEVSVRKVFHFVRIKQVLWANEGNKAGEESVNLFLKSIGLREYSRYM 296 Query: 295 MAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLR 354 +P +P + W D +AW+QG TG+P++DA MR+L GW+H+R+R Sbjct: 297 SFNHP-YSHERPLLGHLRYFPWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIR 355 Query: 355 MITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQ 414 ++ +SF VK L + WR G +YF LLD DL S+ GWQ+ + T D + RI NP Sbjct: 356 VVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTLPDGREFDRIDNPQFV 415 Query: 415 GKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKN------DLSLNYPLPIVDHKKAC- 467 G + DP G ++R WLPEL+ +PT++IH P + + +L NYPLPIV+ A Sbjct: 416 GYKCDPHGEYVRRWLPELSRLPTEWIHHPWNAPESVLEAAGIELGSNYPLPIVEIDSAKV 475 Query: 468 --HHTLNQYYA 476 L+Q + Sbjct: 476 RLEQALSQMWQ 486 >gi|325003004|ref|ZP_08124116.1| deoxyribodipyrimidine photo-lyase [Pseudonocardia sp. P1] Length = 464 Score = 372 bits (954), Expect = e-100, Method: Composition-based stats. Identities = 155/478 (32%), Positives = 219/478 (45%), Gaps = 25/478 (5%) Query: 6 AMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASL 65 A S +VW R DLR+ D AA +D + F+ P A + +F+Y L Sbjct: 2 ASSTAVVWFRRDLRVADQPTFLAAADAADRALAL-FVLDPALLD--PSGAARRNFLYGCL 58 Query: 66 LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125 ++ +L + +V + D + + + Y RD+ +EK Sbjct: 59 RELDSALGGRLLVVK-------GDPADVVPRVATAVGADTVHVAADYGPYGRERDEQVEK 111 Query: 126 RL-QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL 184 L + PG + +KV+TPF +A ++ +A + + Sbjct: 112 ALTDAGAELVRTGSPYAVAPGRVTKGDGDPFKVFTPFSRAWAEHGWRAPAETSASTCTWM 171 Query: 185 TGPVTPSNIPRFFDYPFQAIDPMFP-IGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS 243 + D P GE A F E V Y QRD+PA +GTS Sbjct: 172 DPSGKGGGPRAVQVPADEPCDSALPDAGETAAAARWADFLDEGVAEYESQRDMPAKKGTS 231 Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCM 303 +SPYL G + PR DL + ++ E+ WREFY ++ P Sbjct: 232 GMSPYLKYGCVHPRTLL-------ADLGSRRGDSVKAYRTEIAWREFYADVLYRRPDSAR 284 Query: 304 GKPFIPWTEKIEWNKDS---HLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASF 360 + + + + D L+ WK G TGFPI+DA MRQL WMHNR+RM+ ASF Sbjct: 285 -RNYDTGFDHLPLRTDEAAYDDLERWKDGRTGFPIVDAGMRQLRAEAWMHNRVRMVVASF 343 Query: 361 LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDP 420 LVKDL + W G +FM L+DGDLASN GWQW A +G D+ PYFRIFNP QG+RFDP Sbjct: 344 LVKDLHLPWWWGARHFMQLLVDGDLASNQHGWQWTAGSGTDAAPYFRIFNPITQGERFDP 403 Query: 421 QGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478 G ++R W+PEL +VP + +H P W K+ L YP +V+HK L +Y A K Sbjct: 404 DGDYVRRWVPELADVPGKAVHQP--WKLKDGLPDGYPERMVEHKAEREEALARYEAVK 459 >gi|37520353|ref|NP_923730.1| DNA photolyase [Gloeobacter violaceus PCC 7421] gi|35211346|dbj|BAC88725.1| DNA photolyase [Gloeobacter violaceus PCC 7421] Length = 479 Score = 372 bits (954), Expect = e-100, Method: Composition-based stats. Identities = 167/477 (35%), Positives = 239/477 (50%), Gaps = 14/477 (2%) Query: 8 SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67 S+ +VW R DLR+ DN AL+ A +V+AVFI P + + + +F+ S+L+ Sbjct: 3 SIAIVWHRRDLRVHDNPALWQASRTG-GQVLAVFIVDPTIVERDDTAPARIYFLRESVLE 61 Query: 68 VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127 +QK+ G + ++ L + +++N E RD + L Sbjct: 62 LQKAYRTIGGRLAVR----VGEPVQQLVALAQAVGAGAVYFNDDIEPYARERDARAAEAL 117 Query: 128 QHRVI-CKSFDDSVLLPPGSILNHAL-QMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185 + I + + +L P G +L A + Y VYTPF + + Sbjct: 118 RAAGITVHACAEILLHPAGEVLTAAGGKPYTVYTPFWRQWSAKPKPKPFPTP---ERLEA 174 Query: 186 GPVTPSNIPRFFDYPFQAIDPMF-PIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244 V + P + GEQ+ L L F +E +Y Y E+RD+P GTS+ Sbjct: 175 PTVEEQSFPELAQLGRPFAGELLVSPGEQSGLEQLEAFAREGLYRYGERRDLPGCDGTSR 234 Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDL-LIKPKSGAFSWLNELIWREFYRHLMAFYPSVCM 303 LS +L G + R W R + + + ++G W EL WREFY++ + P + Sbjct: 235 LSAHLKFGTVGIRAVWARTMDAWKQAEHDRDRAGLAVWQQELGWREFYKYELFHLPQLA- 293 Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363 G+PF E +W++D + W QG TG+PI+DAAMRQLNT+ WMHNRLRMI ASFL K Sbjct: 294 GRPFRREFENFQWDEDQERFERWCQGETGYPIVDAAMRQLNTVSWMHNRLRMIVASFLTK 353 Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423 DLL+ + GE YFM +L+DGDL++NNGGWQWAAS G D P RIFNP+ Q R+DP+ Sbjct: 354 DLLLPYGWGERYFMQKLVDGDLSANNGGWQWAASVGTDPKP-LRIFNPSTQAGRYDPKAV 412 Query: 424 FIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQ 480 FIR WLPEL V T + Y PIV+HK+ +Y A + Q Sbjct: 413 FIRRWLPELEGVDTALLVTSERLPPLMRAQHRYAQPIVEHKRQQQVFKERYRAVRAQ 469 >gi|88802270|ref|ZP_01117797.1| deoxyribodipyrimidine photolyase-class I [Polaribacter irgensii 23-P] gi|88781128|gb|EAR12306.1| deoxyribodipyrimidine photolyase-class I [Polaribacter irgensii 23-P] Length = 434 Score = 372 bits (954), Expect = e-100, Method: Composition-based stats. Identities = 144/474 (30%), Positives = 218/474 (45%), Gaps = 49/474 (10%) Query: 8 SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67 +V++ W R DLR+ DN Y A S+ V+ +FI + + + +FIY +L Sbjct: 4 AVNIFWFRRDLRLDDNVGFYNALK-SEHPVLPIFIFDEDILDKLQKEDARLNFIYDTLQD 62 Query: 68 VQKSL-SQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 ++ L + G + + + + +F NR YE RD ++ Sbjct: 63 MRAILEKKHGSSIAMLHGNPS----AIFEKLISEYSIHTVFTNRDYEPYATERDNKIQAL 118 Query: 127 LQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185 L I +F D V+ ++ YKVYTPF K + +L + Sbjct: 119 LSSNGIHFDTFKDQVIFEKNEVVKKDGLPYKVYTPFMKVWKEQFKTYNLDFYYTSSF--- 175 Query: 186 GPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEK--VYYYVEQRDIPAIQGTS 243 N+ + + P + IG + A ++K + Y E R+ PA+ TS Sbjct: 176 ----LENLIQNTELPNLHLSD---IGFEVAKQKIKKHTVTPKLIQTYEETRNFPALDSTS 228 Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCM 303 +L P+L G +S R+ + E ++ + ELIWREF+ ++ +P Sbjct: 229 RLGPHLRFGTVSVRKMMEKAISEKNEI----------FWQELIWREFFMQILWHFPYTSK 278 Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363 F P ++IEW + W QG TG+P++DA MRQLN G+MHNR+RM+ SFL K Sbjct: 279 -NSFKPKYDRIEWRNNEAEFNKWCQGETGYPLVDAGMRQLNETGFMHNRIRMLVGSFLCK 337 Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423 LL+DWR GE YF +L D ++ASN G WQW A +G D+ PYFRIFNPT Q K+FD Sbjct: 338 HLLIDWRWGEAYFAKKLHDYEMASNVGNWQWVAGSGVDAAPYFRIFNPTTQIKKFDKDLA 397 Query: 424 FIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477 +I+ W+P + Y +VDHK+A L+ Y A Sbjct: 398 YIKKWVPNFQEL-------------------TYAKEMVDHKEARERCLSTYKEA 432 >gi|241668656|ref|ZP_04756234.1| deoxyribodipyrimidine photo-lyase [Francisella philomiragia subsp. philomiragia ATCC 25015] gi|254877189|ref|ZP_05249899.1| deoxyribodipyrimidine photolyase [Francisella philomiragia subsp. philomiragia ATCC 25015] gi|254843210|gb|EET21624.1| deoxyribodipyrimidine photolyase [Francisella philomiragia subsp. philomiragia ATCC 25015] Length = 464 Score = 371 bits (953), Expect = e-100, Method: Composition-based stats. Identities = 152/483 (31%), Positives = 236/483 (48%), Gaps = 30/483 (6%) Query: 6 AMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASL 65 + + W R DLR+ DN AL+ A + I +FI Q AS Sbjct: 2 PKKIAIHWFRQDLRLADNPALHQASQADET--ITIFILDENQ-----------EIGGASK 48 Query: 66 LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125 L + SLS + +E + + +T ++NR Y+ + RD +++ Sbjct: 49 LWLHHSLSSLSKSLNNKLNFFSGNPLEIIKKLVKENNITDFYWNRCYDKYSIDRDTQIKQ 108 Query: 126 RLQHR-VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQ-NLVQADLRSLPVPAIR 183 LQ + + SF+ S+L+ P YKVYTPF K LI+ ++++ +++ Sbjct: 109 FLQEQDINVSSFNGSLLIEPWQCKKDDGTHYKVYTPFYKELIKIRKYRSNIVKPSFNSLK 168 Query: 184 LTGPVTPSNIPRFFD--YPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQG 241 + + + +Q I + IGE + IL +F KV Y RD + Sbjct: 169 KLETADELDSLKLLEPKLSWQNIIDQWQIGEDASHQILEEFLDGKVKEYKIARDFMSTDS 228 Query: 242 TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSV 301 TS+LSPYL G +SP Q +N ++ L + ++ EL+WR+F + + +YP + Sbjct: 229 TSKLSPYLHFGEISPNQIFNAVQ-----SLDYIGNNEEHFIKELVWRDFSYYQIYYYPEL 283 Query: 302 CMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFL 361 K + EW+ D+ LL+ W+ G TG PI+DA MR+L G+MHNR+RMI ASFL Sbjct: 284 -HNKNINQKFDSFEWDNDATLLKRWQTGQTGIPIVDAGMRELWQTGYMHNRVRMIVASFL 342 Query: 362 VKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQ 421 +K+ L+ W+ GE++F L D D ASNN WQW A G D+ PYFRIFNP +Q ++F+ Sbjct: 343 IKNCLIHWKYGEKWFFDTLFDADFASNNANWQWVAGCGLDAAPYFRIFNPVLQAEKFEAY 402 Query: 422 GTFIRHWLPELNNVPTQYIHAPHSWLD------KNDLSLNYPLPIVDHKKACHHTLNQYY 475 +IR ++PEL +P + I P + L NYP P++D KK+ L + Sbjct: 403 -EYIRKYVPELKFLPNKLIAKPWEASELVLQEAGVKLGDNYPTPVIDLKKSRDKALELHK 461 Query: 476 AAK 478 Sbjct: 462 KLN 464 >gi|296487421|gb|DAA29534.1| cryptochrome 1 (photolyase-like) [Bos taurus] Length = 543 Score = 371 bits (953), Expect = e-100, Method: Composition-based stats. Identities = 126/501 (25%), Positives = 203/501 (40%), Gaps = 38/501 (7%) Query: 7 MSVH-LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASL 65 M V+ + W R LR+ DN AL +D + V+I P + + F+ L Sbjct: 1 MGVNAVHWFRKGLRLHDNPALKECIQGADT-IRCVYILDPWFAGSSNVGINRWRFLLQCL 59 Query: 66 LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125 + +L + + + + +TKL E RD ++K Sbjct: 60 EDLDANLRKLNSRLFVIRG----QPADVFPRLFKEWNITKLSIEYDSEPFGKERDAAIKK 115 Query: 126 RLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLV-QADLRSLPVPAI-- 182 + S L L+ +++ P Q L+ + + +PV I Sbjct: 116 LATEAGVEVIVRISHTLY---DLDKIIELNGGQPPLTYKRFQTLISKMEPLEIPVETITS 172 Query: 183 ----RLTGPVTPSNIPR-----FFDYPFQA---IDPMFPIGEQNALHILRKFCKEKVYYY 230 + T P++ + + + F ++P GE AL L + + K + Sbjct: 173 EVIEKCTTPLSDDHDEKYGVPSLEELGFDTDGLPSAVWPGGETEALTRLERHLERKAWVA 232 Query: 231 VEQRDIPAIQGT----SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELI 286 +R + LSPYL G LS R + +L + + + K S S +L+ Sbjct: 233 NFERPRMNANSLLASPTGLSPYLRFGCLSCRLFYFKLTDLYKKVK-KNSSPPLSLYGQLL 291 Query: 287 WREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTI 346 WREF+ P + P +I W+K+ L W +G TGFP IDA M QL Sbjct: 292 WREFFYTAATNNPRFDKMEG-NPICVQIPWDKNPEALAKWAEGRTGFPWIDAIMTQLRQE 350 Query: 347 GWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPY 405 GW+H+ R A FL + DL + W G + F LLD D + N G W W S + + Sbjct: 351 GWIHHLARHAVACFLTRGDLWISWEEGMKVFEELLLDADWSINAGSWMW-LSCSSFFQQF 409 Query: 406 FRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLD------KNDLSLNYPLP 459 F + P G+R DP G +IR +LP L P +YI+ P + + K + +NYP P Sbjct: 410 FHCYCPVGFGRRTDPNGDYIRRYLPVLRGFPAKYIYDPWNAPEGIQKVAKCLIGVNYPKP 469 Query: 460 IVDHKKACHHTLNQYYAAKKQ 480 +V+H +A + + +Q Sbjct: 470 MVNHAEASRLNIERMKQIYQQ 490 >gi|261876447|dbj|BAI47549.1| cryptochrome1 [Glycine max] gi|261876449|dbj|BAI47550.1| cryptochrome1 [Glycine max] Length = 682 Score = 371 bits (953), Expect = e-100, Method: Composition-based stats. Identities = 136/487 (27%), Positives = 222/487 (45%), Gaps = 22/487 (4%) Query: 10 HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69 +VW R DLRI DN AL A V+AVFI PE+ Q+ ++ SL + Sbjct: 8 SIVWFRRDLRIEDNPALTAGVRAG--AVVAVFIWAPEEEGQYYPGRVSRWWLKNSLAHLD 65 Query: 70 KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL-Q 128 SL G + + D++ L T+LF+N Y+ + RD ++ L Sbjct: 66 SSLRNLGTPLITKRST---DTLSSLFEVVKSTGATQLFFNHLYDPLSLVRDHRAKEVLTA 122 Query: 129 HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188 + +SF+ +L P + + + + + F + + + LP I Sbjct: 123 QGITVRSFNADLLYEPWDVNDAHGRPFTTFAAFWERCLSMPYDPESPLLPPKRIIPGDAS 182 Query: 189 TPSNIPRFFDYPFQA-----IDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS 243 + F+ + + + G NA L F + Y + R TS Sbjct: 183 RCPSDTLLFEDELEKASNALLARAWSPGWSNANKALTTFINGPLIEYSKNRRKADSATTS 242 Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFS----WLNELIWREFYRHLMAFYP 299 LSP+L G LS ++ ++ ++ + V + +L + RE+ R++ +P Sbjct: 243 LLSPHLHFGELSVKKVFHLVRIKQVLWANEGNKAGEESVNLFLKSIGLREYSRYISFNHP 302 Query: 300 SVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITAS 359 +P + + W + +AW+QG TG+P++DA MR+L GW+H+R+R++ +S Sbjct: 303 -YSHERPLLGHLKFFPWVVNEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSS 361 Query: 360 FLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFD 419 F VK L + WR G +YF LLD DL S+ GWQ+ + + D RI NP +G +FD Sbjct: 362 FFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGSLPDGREIDRIDNPQFEGYKFD 421 Query: 420 PQGTFIRHWLPELNNVPTQYIHAPHSWLDKN------DLSLNYPLPIVDHKKACHHTLNQ 473 P G ++R WLPEL+ +PT++IH P + + +L NYPLPIV A + L Sbjct: 422 PNGEYVRRWLPELSRLPTEWIHHPWNAPESVLQAAGIELGSNYPLPIVGIDAAKNRLLEA 481 Query: 474 YYAAKKQ 480 +Q Sbjct: 482 LSKMWQQ 488 >gi|149742994|ref|XP_001499263.1| PREDICTED: cryptochrome 1 [Equus caballus] Length = 587 Score = 371 bits (953), Expect = e-100, Method: Composition-based stats. Identities = 127/501 (25%), Positives = 203/501 (40%), Gaps = 38/501 (7%) Query: 7 MSVH-LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASL 65 M V+ + W R LR+ DN AL +D + V+I P + + F+ L Sbjct: 1 MGVNAVHWFRKGLRLHDNPALKECIQGADT-IRCVYILDPWFAGSSNVGINRWRFLLQCL 59 Query: 66 LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125 + +L + + + + +TKL E RD ++K Sbjct: 60 EDLDANLRKLNSRLFVIRG----QPADVFPRLFKEWNITKLSIEYDSEPFGKERDAAIKK 115 Query: 126 RLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLV-QADLRSLPVPAI-- 182 + S L L+ +++ P Q L+ + + +PV I Sbjct: 116 LATEAGVEVIVRISHTLY---DLDKIIELNGGQPPLTYKRFQTLISKMEPLEIPVETITS 172 Query: 183 ----RLTGPVTPSNIPR-----FFDYPFQA---IDPMFPIGEQNALHILRKFCKEKVYYY 230 + T P++ + + + F ++P GE AL L + + K + Sbjct: 173 EVIEKCTTPLSDDHDEKYGVPSLEELGFDTDGLPSAVWPGGETEALTRLERHLERKAWVA 232 Query: 231 VEQRDIPAIQGT----SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELI 286 +R + LSPYL G LS R + RL + + + K S S +L+ Sbjct: 233 NFERPRMNANSLLASPAGLSPYLRFGCLSCRLFYFRLTDLYRKVK-KNSSPPLSLYGQLL 291 Query: 287 WREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTI 346 WREF+ P + P +I W+K+ L W +G TGFP IDA M QL Sbjct: 292 WREFFYTAATNNPRFDKMEG-NPICVQIPWDKNPEALAKWAEGRTGFPWIDAIMTQLRQE 350 Query: 347 GWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPY 405 GW+H+ R A FL + DL + W G + F LLD D + N G W W S + + Sbjct: 351 GWIHHLARHAVACFLTRGDLWISWEEGMKVFEELLLDADWSINAGSWMW-LSCSSFFQQF 409 Query: 406 FRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLD------KNDLSLNYPLP 459 F + P G+R DP G +IR +LP L P +YI+ P + + K + +NYP P Sbjct: 410 FHCYCPVGFGRRTDPNGDYIRRYLPVLRGFPAKYIYDPWNAPEGIQKVAKCLIGVNYPKP 469 Query: 460 IVDHKKACHHTLNQYYAAKKQ 480 +V+H +A + + +Q Sbjct: 470 MVNHAEASRLNIERMKQIYQQ 490 >gi|149067374|gb|EDM17107.1| cryptochrome 1 (photolyase-like) [Rattus norvegicus] Length = 555 Score = 371 bits (952), Expect = e-100, Method: Composition-based stats. Identities = 126/501 (25%), Positives = 202/501 (40%), Gaps = 38/501 (7%) Query: 7 MSVH-LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASL 65 M V+ + W R LR+ DN AL +D + V+I P + + F+ L Sbjct: 1 MGVNAVHWFRKGLRLHDNPALKECIQGADT-IRCVYILDPWFAGSSNVGINRWRFLLQCL 59 Query: 66 LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125 + +L + + + + +TKL E RD ++K Sbjct: 60 EDLDANLRKLNSRLFVIRG----QPADVFPRLFKEWNITKLSIEYDSEPFGKERDAAIKK 115 Query: 126 RLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLV-QADLRSLPVPAI-- 182 + S L L+ +++ P Q LV + + +P I Sbjct: 116 LATEAGVEVIVRISHTLY---DLDKIIELNGGQPPLTYKRFQTLVSKMEPLEMPADTITS 172 Query: 183 ----RLTGPVTPSNIPR-----FFDYPFQA---IDPMFPIGEQNALHILRKFCKEKVYYY 230 + T P++ + + + F ++P GE AL L + + K + Sbjct: 173 DVIGKCTTPLSDDHDEKYGVPSLEELGFDTDGLSSAVWPGGETEALTRLERHLERKAWVA 232 Query: 231 VEQRDIPAIQGT----SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELI 286 +R + LSPYL G LS R + +L + + + K S S +L+ Sbjct: 233 NFERPRMNANSLLASPTGLSPYLRFGCLSCRLFYFKLTDLYKKVK-KNSSPPLSLYGQLL 291 Query: 287 WREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTI 346 WREF+ P + P +I W+K+ L W +G TGFP IDA M QL Sbjct: 292 WREFFYTAATNNPRFDKMEG-NPICVQIPWDKNPEALAKWAEGRTGFPWIDAIMTQLRQE 350 Query: 347 GWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPY 405 GW+H+ R A FL + DL + W G + F LLD D + N G W W S + + Sbjct: 351 GWIHHLARHAVACFLTRGDLWISWEEGMKVFEELLLDADWSINAGSWMW-LSCSSFFQQF 409 Query: 406 FRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLD------KNDLSLNYPLP 459 F + P G+R DP G +IR +LP L P +YI+ P + + K + +NYP P Sbjct: 410 FHCYCPVGFGRRTDPNGDYIRRYLPVLRGFPAKYIYDPWNAPEGIQKVAKCLIGVNYPKP 469 Query: 460 IVDHKKACHHTLNQYYAAKKQ 480 +V+H +A + + +Q Sbjct: 470 MVNHAEASRLNIERMKQIYQQ 490 >gi|163735096|ref|ZP_02142532.1| deoxyribodipyrimidine photolyase, putative [Roseobacter litoralis Och 149] gi|161391554|gb|EDQ15887.1| deoxyribodipyrimidine photolyase, putative [Roseobacter litoralis Och 149] Length = 466 Score = 370 bits (951), Expect = e-100, Method: Composition-based stats. Identities = 151/476 (31%), Positives = 223/476 (46%), Gaps = 27/476 (5%) Query: 12 VWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQKS 71 VW R DLR++D+ AL AA + + VI VFI + + A + + + ++ Sbjct: 2 VWFRRDLRLSDHPALNAAVKSGN-PVIPVFIHDDQVET---LGAAPKWRLGLGIDHLSET 57 Query: 72 LSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHRV 131 L + ++E L + + +F+ R Y+ V RD L+ L+ Sbjct: 58 LEGLNSRLILRRGP----ALETLRTLVQETGAGAVFWTRLYDPAAVDRDTELKAALKQDG 113 Query: 132 I-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP--- 187 I +SF ++ P ++ YKVYTPF + V A L + P Sbjct: 114 IDARSFGGHLMFEPWTVETKTGGFYKVYTPFWNMVKNRDVDAPLSAPAKIPAPDAWPSSE 173 Query: 188 -VTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246 ++ N+ D + P +GE A L F + V Y RD PA+ GTS LS Sbjct: 174 ALSDWNMGAAMDRGAAVVAPYVRLGEAAAQTRLSTFIDKIVARYDTTRDQPAVDGTSGLS 233 Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP 306 L++G +SP QCW+ + K GA ++L EL+WREF HLM P + Sbjct: 234 ENLALGEISPHQCWHAGLRARQE----GKPGAETFLKELVWREFAYHLMHHTPRILTDN- 288 Query: 307 FIPWTEKIEWNKDS--HLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364 + + WN+D + W+QG TG +DAAMR+L G MHNR RMI AS+L K Sbjct: 289 WKEGWDSFPWNRDETTEAVMRWQQGRTGIQFVDAAMRELYVTGRMHNRGRMIVASYLTKH 348 Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424 LL DW+IG ++F L+D D ASN GWQW+A +G D+ PYFR+FNP Q +FD + Sbjct: 349 LLSDWKIGLKWFEGCLIDWDPASNAMGWQWSAGSGPDATPYFRVFNPVTQLDKFDKDRQY 408 Query: 425 IRHWLPELNNVPTQ-----YIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYY 475 ++ W+ + P++ Y P +W D YP P+V + L Y Sbjct: 409 VKRWIAQGRRAPSETALSFYDAIPRAWGLSGD--QEYPAPVVAADEGRKRALEAYE 462 >gi|90424846|ref|YP_533216.1| deoxyribodipyrimidine photolyase [Rhodopseudomonas palustris BisB18] gi|90106860|gb|ABD88897.1| Deoxyribodipyrimidine photo-lyase type I [Rhodopseudomonas palustris BisB18] Length = 483 Score = 370 bits (951), Expect = e-100, Method: Composition-based stats. Identities = 145/476 (30%), Positives = 225/476 (47%), Gaps = 26/476 (5%) Query: 3 ATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIY 62 A + LVW R+DLR++D+ AL A S A V+ +++ E + ++ Sbjct: 2 ANAPAPISLVWFRDDLRLSDHPALDDA-GRSGAAVVCLYVLDEESAGLRPLGGAARWWLA 60 Query: 63 ASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNR-QYEINEVRRDK 121 SL + L+ +G V + + + + ++ +N D Sbjct: 61 QSLRSLSADLAARGGVLILRRGP----AARIVAEVAREAGAVRVSWNDVPNRPARAVADD 116 Query: 122 LLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPA 181 L + V + +L P ++ + +V+TPF K ++ P+ A Sbjct: 117 LAARLGDLGVAAQCCPGDLLAAPATVRTQQGRGLRVFTPFWKRVLALGDP----PQPLTA 172 Query: 182 IRLTGPVTPSNIPRFFDYPFQAIDP--------MFPIGEQNALHILRKFCKEKVYYYVEQ 233 + V D+ + P + GE A L+ F + Y + Sbjct: 173 PKALCSVPSLASDTLDDWKLEPTRPDWAGGLRARWQPGEAAAQRGLQHFLHGAIAGYATE 232 Query: 234 RDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRH 293 RD P TS LSP+L G +SPRQ W+ + + +L+EL WREF RH Sbjct: 233 RDRPDRVATSTLSPHLRFGEISPRQVWHAAR-FAAAERPAIAADVDKFLSELGWREFCRH 291 Query: 294 LMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRL 353 L+ P + + P ++ W D L+AW++G TG+P++DA MR+L G MHNR+ Sbjct: 292 LLFDNPDLAT-RNLQPAFDRFPWTTDPIALRAWQRGRTGYPLVDAGMRELRLTGVMHNRV 350 Query: 354 RMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTI 413 RM+ ASFLVK LL+DWR GE +F L+D D ASN WQW A G D+ PYFR+FNP + Sbjct: 351 RMVAASFLVKHLLLDWRCGEAWFWDTLVDADPASNPANWQWVAGCGADAAPYFRVFNPIL 410 Query: 414 QGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSW----LDKNDLSLN--YPLPIVDH 463 QG+RFD +G ++R ++PE+ + + IH P + L+ ++L YP PIVDH Sbjct: 411 QGERFDAEGDYVRRFIPEIAGLSNKSIHQPWTATPLELEAAGVTLGDTYPNPIVDH 466 >gi|300790232|ref|YP_003770523.1| deoxyribodipyrimidine photo-lyase [Amycolatopsis mediterranei U32] gi|299799746|gb|ADJ50121.1| deoxyribodipyrimidine photo-lyase [Amycolatopsis mediterranei U32] Length = 448 Score = 370 bits (951), Expect = e-100, Method: Composition-based stats. Identities = 148/471 (31%), Positives = 229/471 (48%), Gaps = 30/471 (6%) Query: 5 TAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYAS 64 T + ++W R DLR+ D+ AL A +S V+A+++ + A + F+Y Sbjct: 2 TREAPVVLWFRRDLRLGDHAALLEASRHSK-HVLALYVLDEALLK--PGGAPREAFLYGC 58 Query: 65 LLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLE 124 L ++ + L + ++ + + + + + + + + RRD + Sbjct: 59 LEKLNEQLGGRLMLVRGEPAAEVVKAAKKIGAAA-------VHVSADTGPYGRRRDASVA 111 Query: 125 KRL-QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIR 183 K L +H + S + PG + Y+V+TPF +A + + P Sbjct: 112 KALAEHNIEWVETGSSYAVTPGRVTKPDGSPYRVFTPFFRAWTARGWHSPADTGPS---- 167 Query: 184 LTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS 243 L V P + P + GEQ AL + +F + + Y E RD P +GT+ Sbjct: 168 LVDWVEPPRSLKIPKAPA-VSATLPEPGEQAALDVWHEFLDDGIETYDEDRDRPDREGTT 226 Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCM 303 +LSPYL G + PR DL + GA S +E+ WREF+ ++ P Sbjct: 227 RLSPYLRWGCIHPRTIL-------ADLAGDDRVGAKSLRSEICWREFHADVLWHRPETAR 279 Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363 + + ++++ D + W G TG+PI+DA MRQL GWMHNR+RM+ ASFLVK Sbjct: 280 EN-YDHRFDGMKYDDDREAFERWCAGRTGYPIVDAGMRQLLAEGWMHNRVRMVVASFLVK 338 Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423 DL + W +G +FM L+DGDLASN WQW A G D+ PYFRIFNPT QG++FDP G Sbjct: 339 DLHLPWWLGARHFMKHLVDGDLASNQLNWQWVAGCGTDAAPYFRIFNPTTQGEKFDPAGD 398 Query: 424 FIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQY 474 ++R ++PEL +VP + +H D YP P+VDH +L +Y Sbjct: 399 YVRKYVPELRSVPGKAVH------QLKDRPEGYPEPMVDHAHERQVSLERY 443 >gi|738308|prf||1924377A blue light photoreceptor Length = 681 Score = 370 bits (951), Expect = e-100, Method: Composition-based stats. Identities = 138/490 (28%), Positives = 226/490 (46%), Gaps = 25/490 (5%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 +VW R DLR+ DN AL AA VIA+F+ PE+ + ++ SL Q+ Sbjct: 15 IVWFRRDLRVEDNPALAAAVRAG--PVIALFVWAPEEEGHYHPGRVSRWWLKNSLAQLDS 72 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL-QH 129 SL G + + DS+ L +++F+N Y+ + RD + L Sbjct: 73 SLRSLGTCLITKRST---DSVASLLDVVKSTGASQIFFNHLYDPLSLVRDHRAKDVLTAQ 129 Query: 130 RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189 + +SF+ +L P + + + + ++ F + + + LP I Sbjct: 130 GIAVRSFNADLLYQPWEVTDELGRPFSMFAAFWERCLSMPYDPESPLLPPKKIISGDVSK 189 Query: 190 PSNIPRFFDYPFQA-----IDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244 P F+ + + + G N L F + Y + R TS Sbjct: 190 CVADPLVFEDDSEKGSNALLARAWSPGWSNGDKALTTFINGPLLEYSKNRRKADSATTSF 249 Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFS----WLNELIWREFYRHLMAFYPS 300 LSP+L G +S R+ ++ ++ + V + +L + RE+ R++ +P Sbjct: 250 LSPHLHFGEVSVRKVFHLVRIKQVAWANEGNEAGEESVNLFLKSIGLREYSRYISFNHP- 308 Query: 301 VCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASF 360 +P + + W D + +AW+QG TG+P++DA MR+L GW+H+R+R++ +SF Sbjct: 309 YSHERPLLGHLKFFPWAVDENYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSF 368 Query: 361 LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDP 420 VK L + WR G +YF LLD DL S+ GWQ+ T DS + RI NP +G +FDP Sbjct: 369 FVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYITGTLPDSREFDRIDNPQFEGYKFDP 428 Query: 421 QGTFIRHWLPELNNVPTQYIHAPHSWLDKN------DLSLNYPLPIVDHKKACHH---TL 471 G ++R WLPEL+ +PT +IH P + + +L NYPLPIV +A L Sbjct: 429 NGEYVRRWLPELSRLPTDWIHHPWNAPESVLQAAGIELGSNYPLPIVGLDEAKARLHEAL 488 Query: 472 NQYYAAKKQS 481 +Q + + S Sbjct: 489 SQMWQLEAAS 498 >gi|304571306|dbj|BAJ15771.1| cryptochrome1 [Cardamine nipponica] Length = 693 Score = 370 bits (951), Expect = e-100, Method: Composition-based stats. Identities = 137/492 (27%), Positives = 233/492 (47%), Gaps = 27/492 (5%) Query: 10 HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69 +VW R DLR+ DN AL AA VIA+F+ PE+ + ++ SL Q+ Sbjct: 2 SIVWFRRDLRVEDNPALAAAVRAG--PVIALFVWAPEEEGHYHPGRVSRWWLKNSLAQLD 59 Query: 70 KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL-Q 128 SL G + + DS+ L +++F+N Y+ + RD + L Sbjct: 60 SSLRSLGTCLITKRST---DSVASLLDVVKSTGASQIFFNHLYDPLSLVRDHRAKDVLTA 116 Query: 129 HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188 + +SF+ +L P + + + + ++ F + + + LP P ++G V Sbjct: 117 QGIAVRSFNADLLYEPWEVTDELGRPFSMFAAFWERCLSMPYDPESPLLP-PKKIISGDV 175 Query: 189 TP--SNIPRFFDYPFQAIDPM----FPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGT 242 + S+ F D + + + + G NA L F + Y + R T Sbjct: 176 SKCVSDPLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSATT 235 Query: 243 SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFS----WLNELIWREFYRHLMAFY 298 S LSP+ G +S R+ ++ ++ + V + +L + RE+ R++ + Sbjct: 236 SFLSPHFHFGEVSVRKVFHLVRIKQVAWANEGNQAGEESVNLFLKSIGLREYSRYISFNH 295 Query: 299 PSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITA 358 P +P + + W D + +AW+QG TG+P++DA M++L GW+H+R+R++ + Sbjct: 296 P-YSHERPLLGHLKFFPWAVDENYFKAWRQGRTGYPLVDAGMKELWATGWLHDRIRVVVS 354 Query: 359 SFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRF 418 SF VK L + WR G +YF LLD DL S+ GWQ+ T DS + RI NP +G +F Sbjct: 355 SFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYITGTLPDSREFDRIDNPQFEGYKF 414 Query: 419 DPQGTFIRHWLPELNNVPTQYIHAPHSWLDKN------DLSLNYPLPIVDHKKACHH--- 469 DP G ++R WLPEL+ +PT++IH P + + +L NYP P++ +A Sbjct: 415 DPNGEYVRRWLPELSRLPTEWIHHPWNAPESVLQAAGIELGSNYPRPVLGLDEAKARLHE 474 Query: 470 TLNQYYAAKKQS 481 L+Q + + S Sbjct: 475 ALSQMWQLEAAS 486 >gi|5524201|gb|AAD44161.1|AF130423_1 cryptochrome 1 [Solanum lycopersicum] gi|8101442|gb|AAF72555.1|AF130424_1 cryptochrome 1 [Solanum lycopersicum] Length = 679 Score = 370 bits (950), Expect = e-100, Method: Composition-based stats. Identities = 142/491 (28%), Positives = 224/491 (45%), Gaps = 25/491 (5%) Query: 5 TAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYAS 64 + +VW R DLR+ DN AL A VIAVFI PE+ + ++ S Sbjct: 2 SGGGCSIVWFRRDLRVEDNPALAAGVRAG--AVIAVFIYAPEEEGHYYPGRVSRWWLKQS 59 Query: 65 LLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLE 124 L + SL G + + DSI L T+LF+N Y+ + RD + Sbjct: 60 LAHLDSSLKSLGTSLITKRST---DSISSLLEVVKSTGATQLFFNHLYDPISLVRDHRTK 116 Query: 125 KRLQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIR 183 + L + I +SF+ +L P + + + + ++ F + + + LP I Sbjct: 117 EILTAQGISVRSFNADLLYEPWEVNDDEGRPFTTFSAFWEKCLSMPYDPEAPLLPPKRII 176 Query: 184 L-TGPVTPSNIPRFFDYPFQAIDPM----FPIGEQNALHILRKFCKEKVYYYVEQRDIPA 238 PS+ F D + + + + G NA L F + Y + R Sbjct: 177 SGDASRCPSDNLVFEDESEKGSNALLARAWSPGWSNADKALTTFVNGPLLEYSQNRRKAD 236 Query: 239 IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFS----WLNELIWREFYRHL 294 TS LSP+L G +S R+ ++ ++ + V + +L + RE+ R++ Sbjct: 237 SATTSFLSPHLHFGEVSVRKVFHFVRIKQVLWANEGNKAGEESVNLFLKSIGLREYSRYM 296 Query: 295 MAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLR 354 +P +P + W D +AW+QG TG+P++DA MR+L GW+H+R+R Sbjct: 297 SFNHP-YSHERPLLGHLRYFPWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIR 355 Query: 355 MITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQ 414 ++ +SF VK L + WR G +YF LLD DL S+ GWQ+ + T D RI NP Sbjct: 356 VVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTLPDGRELDRIDNPQFV 415 Query: 415 GKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKN------DLSLNYPLPIVDHKKAC- 467 G + DP G ++R WLPEL +PT++IH P + + +L NYPLPIV+ A Sbjct: 416 GYKCDPHGEYVRRWLPELARLPTEWIHHPWNAPESVLEAAGIELGSNYPLPIVEIDSAKV 475 Query: 468 --HHTLNQYYA 476 L+Q + Sbjct: 476 RLEQALSQMWQ 486 >gi|241761599|ref|ZP_04759686.1| Deoxyribodipyrimidine photo-lyase [Zymomonas mobilis subsp. mobilis ATCC 10988] gi|241373907|gb|EER63440.1| Deoxyribodipyrimidine photo-lyase [Zymomonas mobilis subsp. mobilis ATCC 10988] Length = 467 Score = 370 bits (950), Expect = e-100, Method: Composition-based stats. Identities = 152/476 (31%), Positives = 242/476 (50%), Gaps = 28/476 (5%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 L+W R+D R+ DN A+ AA + + VI +I + + ++ SLL + + Sbjct: 8 LIWFRHDFRLRDNAAVTAAIQSRN-PVICFYIQESADAKTESAAD---WWVAESLLALNR 63 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH- 129 L +KG + D+ + + Q KLF+NR+Y+ D++L+K ++ Sbjct: 64 QLKEKGGQLHLFEG----DAEKIIPEIVQQSHACKLFWNRRYDFKGKETDQILKKSIRAM 119 Query: 130 RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189 + +SF +++L P ++ N Q +++++ + +A+ + + + P + T + Sbjct: 120 GLEVQSFPNNLLNEPWTVKNDKGQPFRIFSAYWRAVQRYMNIQAVLPCPENWVFSTREIR 179 Query: 190 PSNIPRFFD-YPFQAIDPMFPI--------GEQNALHILRKFCKEKVYYYVEQRDIPAIQ 240 + + D + I GE A L+ F + + +Y ++RD PA Sbjct: 180 HCLGYKDIAILAKETQDSSWKIKLKQSHRFGENEAHKQLKSFIENDLAHYAKERDFPAKD 239 Query: 241 GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPS 300 GTS LS +L G +S +Q W+ + + G +L EL WREF ++ +P Sbjct: 240 GTSLLSAFLRSGQISSKQIWHEVTK------NGSGEGTSKFLAELGWREFAWSVLWEHPD 293 Query: 301 VCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASF 360 + P +K+ W K S LQ WK+G TG+P IDA MR L G+M NRLRM+TASF Sbjct: 294 LNQHN-LRPEFDKMPWKKASDNLQRWKEGQTGYPFIDAGMRALWQTGFMPNRLRMVTASF 352 Query: 361 LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDP 420 LVK LL+DWR GE++F L+D D A N WQW A +G +S PYFRI NP +Q ++FDP Sbjct: 353 LVKHLLIDWREGEKWFAQTLVDYDPACNATNWQWVAGSGIESAPYFRIMNPILQSQKFDP 412 Query: 421 QGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYA 476 G +IR W+ EL +V T +IH P + NYPLPI+ H++ L + Sbjct: 413 DGQYIREWVKELADVSTAFIHTPWK---ADKQPANYPLPIIAHEEGRDRALRAWKE 465 >gi|255531982|ref|YP_003092354.1| Deoxyribodipyrimidine photo-lyase [Pedobacter heparinus DSM 2366] gi|255344966|gb|ACU04292.1| Deoxyribodipyrimidine photo-lyase [Pedobacter heparinus DSM 2366] Length = 434 Score = 370 bits (950), Expect = e-100, Method: Composition-based stats. Identities = 158/478 (33%), Positives = 230/478 (48%), Gaps = 48/478 (10%) Query: 6 AMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGIS-ARQSHFIYAS 64 V + W R DLR+ DN LY A +S V+ +FI + G R+ +I + Sbjct: 2 KSKVSIFWFRRDLRLEDNVGLYHAL-SSGFPVLPIFIFDENILGKLGDKKDRRVDYIDQA 60 Query: 65 LLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLE 124 LL++ L + + IE + Q V +F NR YE ++RD + Sbjct: 61 LLKINTQLKLSKTRLN----TFHGNPIEIFNMLSEQYAVQAVFCNRDYEPLTIQRDVEIY 116 Query: 125 KRLQ-HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIR 183 + + +++ K+F D V+ +L + Y VYTP+ K + L + RS P Sbjct: 117 EFFKRNQIPFKAFKDQVIFDKSDVLKNDGTPYTVYTPYSKKWKELLKEEHYRSYH-PDYN 175 Query: 184 LTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS 243 + I D F+ D F K + Y + RD PA+Q T+ Sbjct: 176 NFFRQEFTGIHSLNDIGFEKTDIAFET---------PKLTTTIIDEYDKYRDYPAMQRTT 226 Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCM 303 QL L G +S R+C + +WLNELIWREF+ ++ +P V + Sbjct: 227 QLGIALRFGTISIRKCVAFGLKHNQ-----------TWLNELIWREFFMQILYHFPKV-V 274 Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363 + F + I+W + H W +G TG+PI+DA MRQLN G+MHNR+RMI ASFL K Sbjct: 275 DQSFKSKYDNIKWRNNEHEFDRWCEGKTGYPIVDAGMRQLNQTGFMHNRVRMIAASFLCK 334 Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423 LL+DWR GE YF +L D DL++NNG WQWA+ +G DS PYFR+FNPT+Q ++FD Sbjct: 335 HLLIDWRWGEAYFAQKLNDYDLSANNGNWQWASGSGCDSAPYFRVFNPTLQTEKFDKNFA 394 Query: 424 FIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481 +++ W+PE + NYP PIV+H A L Y A K++ Sbjct: 395 YLKKWIPEFE-------------------TENYPEPIVEHSFARERALKTYGNAIKEN 433 >gi|111021970|ref|YP_704942.1| deoxyribodipyrimidine photo-lyase [Rhodococcus jostii RHA1] gi|110821500|gb|ABG96784.1| deoxyribodipyrimidine photo-lyase [Rhodococcus jostii RHA1] Length = 446 Score = 370 bits (950), Expect = e-100, Method: Composition-based stats. Identities = 143/475 (30%), Positives = 220/475 (46%), Gaps = 34/475 (7%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M LVW R DLR+ D L+ S A+ + +F+ + F++ SL Sbjct: 1 MDTALVWFRRDLRLGDLPTLHT-VSESGARALGLFVLDDRLLTT--SGGARRDFLFRSLA 57 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 + L + +V + D ++ + + ++ + Y RD + Sbjct: 58 ALDDQLDGRLLVVK-------GDPVDVVPRVAKKVSAEEVHVSADYGPYGRERDAAVA-- 108 Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 V + + PG + + Y+V+TP+ + +++ +A + + L Sbjct: 109 --EHVDLVATGSPYAVAPGRVTKTDGEPYRVFTPYFRQWLEHGWRAPIDTGSATVEWLDP 166 Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246 + + P GE AL +FC + + Y + RD P + TS++S Sbjct: 167 NDVKARRVAIPEPESDGC----PAGEAAALQRWAEFCDDDLAGYEDARDRPGLDATSRMS 222 Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP 306 YL G + PR DL + + A + +L WR+FY ++ P G Sbjct: 223 VYLKYGNIHPRTML-------RDLARRRSTSAEQYRRQLAWRDFYADILFQRPDSARGN- 274 Query: 307 FIPWTEKIEWN---KDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363 + + I ++ AW +G TGFPI+DA MRQL WMHNR+RMI ASF VK Sbjct: 275 YDRRFDHIRYDSGSDAEEAYTAWCEGRTGFPIVDAGMRQLKAEAWMHNRVRMIVASFFVK 334 Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423 DL + W G YFM+QL+DGDLA+N GWQW A +G D+ PYFR+FNPT QG++FDP G Sbjct: 335 DLHLPWWRGARYFMNQLVDGDLANNQHGWQWTAGSGTDASPYFRVFNPTTQGEKFDPDGE 394 Query: 424 FIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478 ++R W+PEL +P + +HA K+ +YP PIVDH L +Y K Sbjct: 395 YVRRWVPELRGIPGKAVHA-----LKDGRPEDYPPPIVDHAHERQEALARYGEIK 444 >gi|226364473|ref|YP_002782255.1| deoxyribodipyrimidine photo-lyase [Rhodococcus opacus B4] gi|226242962|dbj|BAH53310.1| deoxyribodipyrimidine photo-lyase [Rhodococcus opacus B4] Length = 446 Score = 370 bits (950), Expect = e-100, Method: Composition-based stats. Identities = 142/475 (29%), Positives = 222/475 (46%), Gaps = 34/475 (7%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M LVW R DLR+ D L+ S A+ + +F+ + + F++ SL Sbjct: 1 MDTALVWFRRDLRLGDLPTLHT-VAESGARALGLFVLDDRLLKT--SGGARRDFLFRSLA 57 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 + SL + +V + D ++ + + ++ + Y RD + Sbjct: 58 ALDDSLDGRLLVVK-------GDPVDVVPRVAKKVSAEEVHVSADYGPYGRERDAAVA-- 108 Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 V + + PG + + Y+V+TP+ + +++ +A + + P + Sbjct: 109 --EHVDLVATGSPYAVAPGRVTKTDGEPYRVFTPYFRQWLEHGWRAPIDTGPDTVEWMDP 166 Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246 + + + GE AL +FC++ + Y + RD P + TS++S Sbjct: 167 DDVKTRRVTIPEPESDG----YAAGEAAALERWAEFCEDDLAGYEDARDRPGLDATSRMS 222 Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP 306 YL G + PR DL + A + +L WR+FY ++ P G Sbjct: 223 VYLKYGNIHPRTML-------RDLARRRSKSAEQYRRQLAWRDFYADILFQRPDSARGN- 274 Query: 307 FIPWTEKIEWN---KDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363 + + I ++ AW +G TGFPI+DA MRQL WMHNR+RMI ASF VK Sbjct: 275 YDRRFDHIRYDSGPDAEDAYTAWCEGRTGFPIVDAGMRQLKAENWMHNRVRMIVASFFVK 334 Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423 DL + W G YFM+QL+DGDLA+N GWQW A +G D+ PYFR+FNPT QG++FDP G Sbjct: 335 DLHLPWWRGARYFMNQLVDGDLANNQHGWQWTAGSGTDASPYFRVFNPTTQGEKFDPDGE 394 Query: 424 FIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478 ++R W+PEL + + +HA K+ +YP PIVDH L +Y K Sbjct: 395 YVRRWVPELRGISGKAVHA-----LKDGRPEDYPPPIVDHAHERQEALARYGEIK 444 >gi|89199716|gb|ABD63261.1| cryptochrome 1 [Glycine max] gi|261876445|dbj|BAI47548.1| cryptochrome1 [Glycine max] Length = 681 Score = 370 bits (949), Expect = e-100, Method: Composition-based stats. Identities = 135/487 (27%), Positives = 220/487 (45%), Gaps = 22/487 (4%) Query: 10 HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69 +VW R DLRI DN AL A V+AVF+ PE+ Q+ ++ SL + Sbjct: 7 SIVWFRRDLRIEDNPALTAGVRAG--AVVAVFVWAPEEEGQYYPGRVSRWWLKNSLAHLH 64 Query: 70 KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL-Q 128 SL G + + D++ L T+LF+N Y+ + RD ++ L Sbjct: 65 SSLRNLGTPLITKRST---DTLSSLLEVVKSTGATQLFFNHLYDPLSLVRDHRAKEVLTA 121 Query: 129 HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188 + +SF+ +L P + + + + + F + + + LP I Sbjct: 122 QGITVRSFNADLLYEPWEVNDAHGRPFTTFAAFWERCLSMPYDPESPLLPPKRIIPGDAS 181 Query: 189 TPSNIPRFFDYPFQA-----IDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS 243 + F+ + + + G NA L F + Y + R TS Sbjct: 182 RCPSDTLLFEDELEKASNALLARAWSPGWSNANKALTTFINGPLIEYSKNRRKADSATTS 241 Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFS----WLNELIWREFYRHLMAFYP 299 LSP+L G LS ++ ++ ++ + V + +L + RE+ R++ +P Sbjct: 242 LLSPHLHFGELSVKKVFHLVRIKQVLWANEGNKAGEESVNLFLKSIGLREYSRYISFNHP 301 Query: 300 SVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITAS 359 +P + + W + +AW+QG TG+P++DA MR+L GW+H+R+R++ +S Sbjct: 302 -YSHERPLLGHLKFFPWVVNEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSS 360 Query: 360 FLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFD 419 F VK L + WR G +YF LLD DL S+ GWQ+ + + D RI NP +G +FD Sbjct: 361 FFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGSLPDGREIDRIDNPQFEGYKFD 420 Query: 420 PQGTFIRHWLPELNNVPTQYIHAPHSWLDKN------DLSLNYPLPIVDHKKACHHTLNQ 473 P G ++R WLPEL +PT++IH P + + +L NYPLPIV A L Sbjct: 421 PNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPLPIVGIDAAKTRLLEA 480 Query: 474 YYAAKKQ 480 +Q Sbjct: 481 LSEMWQQ 487 >gi|301784579|ref|XP_002927704.1| PREDICTED: cryptochrome-1-like [Ailuropoda melanoleuca] gi|281347021|gb|EFB22605.1| hypothetical protein PANDA_017512 [Ailuropoda melanoleuca] Length = 587 Score = 370 bits (949), Expect = e-100, Method: Composition-based stats. Identities = 126/501 (25%), Positives = 203/501 (40%), Gaps = 38/501 (7%) Query: 7 MSVH-LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASL 65 M V+ + W R LR+ DN AL +D + V+I P + + F+ L Sbjct: 1 MGVNAVHWFRKGLRLHDNPALKECIQGADT-IRCVYILDPWFAGSSNVGINRWRFLLQCL 59 Query: 66 LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125 + +L + + + + +TKL E RD ++K Sbjct: 60 EDLDANLRKLNSRLFVIRG----QPADVFPRLFKEWNITKLSIEYDSEPFGKERDAAIKK 115 Query: 126 RLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLV-QADLRSLPVPAI-- 182 + S L L+ +++ P Q L+ + + +PV I Sbjct: 116 LATEAGVEVIVRISHTLY---DLDKIIELNGGQPPLTYKRFQTLISKMEPLEIPVETITS 172 Query: 183 ----RLTGPVTPSNIPR-----FFDYPFQA---IDPMFPIGEQNALHILRKFCKEKVYYY 230 + T P++ + + + F ++P GE AL L + + K + Sbjct: 173 EVIEKCTTPLSDDHDEKYGVPSLEELGFDTDGLPSAVWPGGETEALTRLERHLERKAWVA 232 Query: 231 VEQRDIPAIQGT----SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELI 286 +R + LSPYL G LS R + +L + + + K S S +L+ Sbjct: 233 NFERPRMNANSLLASPTGLSPYLRFGCLSCRLFYFKLTDLYKKVK-KNSSPPLSLYGQLL 291 Query: 287 WREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTI 346 WREF+ P + P +I W+K+ L W +G TGFP IDA M QL Sbjct: 292 WREFFYTAATNNPRFDKMEG-NPICVQIPWDKNPEALAKWAEGRTGFPWIDAIMTQLRQE 350 Query: 347 GWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPY 405 GW+H+ R A FL + DL + W G + F LLD D + N G W W S + + Sbjct: 351 GWIHHLARHAVACFLTRGDLWISWEEGMKVFEELLLDADWSINAGSWMW-LSCSSFFQQF 409 Query: 406 FRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLD------KNDLSLNYPLP 459 F + P G+R DP G +IR +LP L P +YI+ P + + K + +NYP P Sbjct: 410 FHCYCPVGFGRRTDPNGDYIRRYLPVLRGFPAKYIYDPWNAPEGIQKVAKCLIGVNYPKP 469 Query: 460 IVDHKKACHHTLNQYYAAKKQ 480 +V+H +A + + +Q Sbjct: 470 MVNHAEASRLNIERMKQIYQQ 490 >gi|50510573|dbj|BAD32272.1| mKIAA0658 protein [Mus musculus] Length = 584 Score = 370 bits (949), Expect = e-100, Method: Composition-based stats. Identities = 129/503 (25%), Positives = 202/503 (40%), Gaps = 33/503 (6%) Query: 1 MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHF 60 M A A SVH W R LR+ DN AL AA + V V+I P + + F Sbjct: 8 MGADGASSVH--WFRKGLRLHDNPALLAAVRGARC-VRCVYILDPWFAASSSVGINRWRF 64 Query: 61 IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120 + SL + SL + + + + VT+L + E RD Sbjct: 65 LLQSLEDLDTSLRKLNSRLFVVRG----QPADVFPRLFKEWGVTRLTFEYDSEPFGKERD 120 Query: 121 KLLEKRLQH-RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPV 179 + K + V + + L I+ Q + +ALI + ++ V Sbjct: 121 AAIMKMAKEAGVEVVTENSHTLYDLDRIIELNGQKPPLTYKRFQALISRMELPKKPAVAV 180 Query: 180 PAIRLTGPVTPSNIPRFFDYPFQAIDPM-----------FPIGEQNALHILRKFCKEKVY 228 + ++ Y +++ + + GE AL L K + K + Sbjct: 181 SSQQMESCRAEIQENHDDTYGVPSLEELGFPTEGLGPAVWQGGETEALARLDKHLERKAW 240 Query: 229 YYVEQRDIPAIQGT----SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNE 284 +R + LSPYL G LS R + RL + + + + + S + Sbjct: 241 VANYERPRMNANSLLASPTGLSPYLRFGCLSCRLFYYRLWDLYKKVK-RNSTPPLSLFGQ 299 Query: 285 LIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLN 344 L+WREF+ P + P +I W+++ L W +G TGFP IDA M QL Sbjct: 300 LLWREFFYTAATNNPRFDRMEG-NPICIQIPWDRNPEALAKWAEGKTGFPWIDAIMTQLR 358 Query: 345 TIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSV 403 GW+H+ R A FL + DL V W G F LLD D + N G W W S Sbjct: 359 QEGWIHHLARHAVACFLTRGDLWVSWESGVRVFDELLLDADFSVNAGSWMW-LSCSAFFQ 417 Query: 404 PYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLD------KNDLSLNYP 457 +F + P G+R DP G +IR +LP+L P++YI+ P + + K + ++YP Sbjct: 418 QFFHCYCPVGFGRRTDPSGDYIRRYLPKLKGFPSRYIYEPWNAPESVQKAAKCIIGVDYP 477 Query: 458 LPIVDHKKACHHTLNQYYAAKKQ 480 PIV+H + + + +Q Sbjct: 478 RPIVNHAETSRLNIERMKQIYQQ 500 >gi|261876451|dbj|BAI47551.1| cryptochrome1 [Glycine max] gi|261876453|dbj|BAI47552.1| cryptochrome1 [Glycine max] Length = 681 Score = 370 bits (949), Expect = e-100, Method: Composition-based stats. Identities = 143/501 (28%), Positives = 232/501 (46%), Gaps = 30/501 (5%) Query: 5 TAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYAS 64 + +VW R DLR+ DN AL A V+ VFI PE+ Q+ ++ S Sbjct: 2 SGGGCSIVWFRRDLRVEDNPALAAGVRAG--AVVCVFIWAPEEEGQYYPGRVSRWWLKQS 59 Query: 65 LLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLE 124 L + L G + +N SI L T+LF+N Y+ + RD + Sbjct: 60 LAHLDSYLRNLGSPLITKRSTN---SISSLLEVVKSTGATQLFFNHLYDPLSLVRDHKAK 116 Query: 125 KRL-QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIR 183 + L + +SF+ +L P + + Q + ++ F + + LP P Sbjct: 117 EVLTAQGITVRSFNSDLLYEPWDVNDAHGQPFTTFSAFWERCLSMPYDPQAPLLP-PKRI 175 Query: 184 LTGPVT--PSNIPRFFDYPFQAIDPM----FPIGEQNALHILRKFCKEKVYYYVEQRDIP 237 + G V+ PS+ F D +A + + + G NA L F + Y + R Sbjct: 176 IPGDVSRCPSDTLVFEDESEKASNALLARAWSPGWSNADKALAAFVNGALIEYSKNRRKA 235 Query: 238 AIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFS----WLNELIWREFYRH 293 TS LSP+L G +S ++ ++ ++ + V + +L + RE+ R+ Sbjct: 236 DSATTSFLSPHLHFGEVSVKKVFHLVRIKQVFWANEGNKAGEESVNLFLKSIGLREYSRY 295 Query: 294 LMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRL 353 + +P +P + + W + +AW+QG TG+P++DA MR+L GW+H+R+ Sbjct: 296 ISFNHP-YSHERPLLGHLKFFPWVVNEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRI 354 Query: 354 RMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTI 413 R++ +SF VK L + WR G +YF LLD DL S+ GWQ+ + T D + RI NP Sbjct: 355 RVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTLPDGREFDRIDNPQF 414 Query: 414 QGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKN------DLSLNYPLPIV--DHKK 465 G + DP G ++R WLPEL +PT++IH P + + +L NYPLPIV D + Sbjct: 415 VGYKCDPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPLPIVGIDAAE 474 Query: 466 AC-HHTLNQYY---AAKKQSL 482 L Q + AA + ++ Sbjct: 475 VRLQEALIQMWRQEAASRAAM 495 >gi|119486492|ref|ZP_01620550.1| probable bacterial cryptochrome [Lyngbya sp. PCC 8106] gi|119456394|gb|EAW37525.1| probable bacterial cryptochrome [Lyngbya sp. PCC 8106] Length = 515 Score = 370 bits (949), Expect = e-100, Method: Composition-based stats. Identities = 131/492 (26%), Positives = 226/492 (45%), Gaps = 31/492 (6%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQ-----HGISARQSHFIYASL 65 L+W RNDLR+ D++ L+ A + A++I V+ P Q+ + ++ F+ S+ Sbjct: 29 LIWYRNDLRVHDHEPLHLAVK-AQAEIIPVYCFDPRQFGKTSFGFPKTGVFRAQFLLESV 87 Query: 66 LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125 ++ SL + G +D + Q + +++Y R+ E+ + LEK Sbjct: 88 TDLRNSLRKLGSDLIVR----YDFPETVIPELVKQLGIDEVYYYREVTSEELAVETTLEK 143 Query: 126 RL-QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL 184 L V KS+ + L + ++ +V+T FRK + +N P L Sbjct: 144 ALNPLDVSLKSYWGATLYDLDDLPFSINRIPEVFTQFRKQVEKNGTIYASFPTPQRLPIL 203 Query: 185 TGPVTPSNIPRFFDYPFQAID------PMFPIGEQNALHILRKFCKEKV--YYYVEQRD- 235 + +P + F GE + L + E+ Y + R+ Sbjct: 204 PQ-IEVGELPTLQKLGLETPQFDQRSVLKFQGGETAGISRLTDYIWEQDCLKDYKQTRNG 262 Query: 236 IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLM 295 + +S+ SP+L++G LSPR ++ +++ + + + EL+WR+++R + Sbjct: 263 MLGANYSSKFSPWLALGCLSPRFIYDHVQDYEEQRV--KNDSTYWLVFELLWRDYFRFIC 320 Query: 296 AFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRM 355 + + + I W +D + W+ G TGFP++DA MR+L G+M NR R Sbjct: 321 LKHGNKIFRLSGLQGVS-IPWKEDWERFECWRTGTTGFPLVDANMRELAATGFMSNRGRQ 379 Query: 356 ITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQG 415 ASFL K+L ++W++G E+F S L+D D+ SN G W + A GND+ FR FN Q Sbjct: 380 NVASFLTKNLGINWKMGAEWFESLLVDYDVCSNWGNWNYTAGVGNDARG-FRYFNIPKQA 438 Query: 416 KRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND------LSLNYPLPIVDHKKACHH 469 K +D G +++HWLPEL +P +H P L ++YP P+VD K+ Sbjct: 439 KDYDSNGDYVKHWLPELAALPASKVHEPWMLQPVEQKRFGVKLGVDYPNPVVDLMKSVQS 498 Query: 470 TLNQYYAAKKQS 481 Y AA ++ Sbjct: 499 NKKSYEAALSKA 510 >gi|124361190|gb|ABN09162.1| Deoxyribodipyrimidine photolyase, class 1 [Medicago truncatula] Length = 679 Score = 370 bits (949), Expect = e-100, Method: Composition-based stats. Identities = 141/499 (28%), Positives = 232/499 (46%), Gaps = 27/499 (5%) Query: 3 ATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIY 62 +++ +VW R DLR+ DN AL A V+ VFI PE+ Q+ ++ Sbjct: 2 SSSGGGCSIVWFRRDLRVEDNPALAAGVRAG--AVVGVFIWAPEEEGQYYPGRVSRWWLK 59 Query: 63 ASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKL 122 SL + SL G + + DS+ L T++F+N Y+ + RD Sbjct: 60 NSLAHLDSSLRNLGTPLVTKRST---DSVSSLLEVVKSTGATQIFFNHLYDPLSLVRDHR 116 Query: 123 LEKRL-QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPA 181 ++ L + +SF+ +L P + + Q + + F + + LP P Sbjct: 117 AKEILTAQGITVRSFNSDLLYEPWDVNDENGQPFTTFDSFWERCLSMPYDPQAPLLP-PK 175 Query: 182 IRLTGPVT--PSNIPRFFDYPFQAIDPM----FPIGEQNALHILRKFCKEKVYYYVEQRD 235 + G V+ PS+ F D +A + + + G NA L F + Y + R Sbjct: 176 RIIPGDVSKCPSDTLVFEDDLEKASNALLARAWSPGWSNANKALTTFINGPLIEYSKNRR 235 Query: 236 IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFS----WLNELIWREFY 291 TS LSP+L G +S ++ ++ ++ + V + +L + RE+ Sbjct: 236 KADSATTSFLSPHLHFGEVSVKKVFHLVRIKQVFWANEGNEAGEESVNLFLKSIGLREYS 295 Query: 292 RHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHN 351 R++ +P +P + + W + +AW+QG TG+P++DA MR+L GW+H+ Sbjct: 296 RYISFNHP-YSHERPLLGHLKFFPWVVNEGYFKAWRQGRTGYPLVDAGMRELWATGWLHD 354 Query: 352 RLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNP 411 R+R++ +SF VK L + WR G +YF LLD DL S+ GWQ+ + T D + RI NP Sbjct: 355 RIRVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTLPDGREFDRIDNP 414 Query: 412 TIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKN------DLSLNYPLPIVDHKK 465 +G + DP G ++R WLPEL +PT++IH P + + +L NYPLPIV+ Sbjct: 415 QFEGYKCDPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPLPIVEIDA 474 Query: 466 AC---HHTLNQYYAAKKQS 481 A L Q + + S Sbjct: 475 ATVRLEEALIQMWQLEAAS 493 >gi|149279055|ref|ZP_01885189.1| deoxyribodipyrimidine photolyase-class I [Pedobacter sp. BAL39] gi|149230334|gb|EDM35719.1| deoxyribodipyrimidine photolyase-class I [Pedobacter sp. BAL39] Length = 433 Score = 370 bits (949), Expect = e-100, Method: Composition-based stats. Identities = 148/474 (31%), Positives = 223/474 (47%), Gaps = 47/474 (9%) Query: 6 AMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASL 65 + + WLR DLR+ D+ ALY A V+ +FI + + + FIY ++ Sbjct: 2 KKEISICWLRRDLRLEDHTALYHALK-GPHPVLLLFIFDTNILSKLPVKDARVTFIYNTI 60 Query: 66 LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125 ++ + L+Q S E + +V +F N YE RD L + Sbjct: 61 KELNEQLAQHDSSIVVKHGSPEKAWTE----LMEEYQVKSVFTNHDYEPYAAERDDSLAE 116 Query: 126 RLQ-HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPA-IR 183 L+ + ++ D V+ I+ + Y V+TP+ K ++ L ++ P+ ++ Sbjct: 117 FLRSEHISFHTYKDQVIFEKDEIVKADGKPYTVFTPYYKQWLRKLDDFYIKPYPIKKYLK 176 Query: 184 LTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS 243 + +IP D F+A FP F K+ Y + RD P T+ Sbjct: 177 HLLKIKRQHIPSLSDMGFEASAQKFPS---------EDF-SRKLDAYEKLRDFPGADATT 226 Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCM 303 + +L G +S R + K + + WL+EL WR+FY ++ +P + Sbjct: 227 HIGMHLRFGTVSIRHAAAQAKTQQAE----------KWLSELAWRDFYMMILWHFPH-TV 275 Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363 F P I+W + +AW QG TG+P++DA MRQLN G+MHNR+RM+ ASFL K Sbjct: 276 NSAFKPAYNNIKWRNNEDEFEAWCQGNTGYPLVDAGMRQLNATGYMHNRVRMVVASFLSK 335 Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423 LL+DW+ GE YF +LLD ++ASN GGWQWA GND+ PYFR+FNP +Q K+FDP Sbjct: 336 HLLIDWKWGETYFAEKLLDYEMASNVGGWQWACGCGNDAAPYFRVFNPELQMKKFDPDFK 395 Query: 424 FIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477 +I WLPE + H P PIV+H A L + AA Sbjct: 396 YIDKWLPEYK----KQKHVP---------------PIVEHAFARERILKVFKAA 430 >gi|27312016|ref|NP_034093.1| cryptochrome-2 [Mus musculus] gi|164519087|ref|NP_001106804.1| cryptochrome-2 [Mus musculus] gi|81882058|sp|Q9R194|CRY2_MOUSE RecName: Full=Cryptochrome-2 gi|5670009|gb|AAD46561.1|AF156987_1 cryptochrome 2 [Mus musculus] gi|26334673|dbj|BAC31037.1| unnamed protein product [Mus musculus] gi|45219826|gb|AAH66799.1| Cryptochrome 2 (photolyase-like) [Mus musculus] gi|56078856|gb|AAH54794.1| Cryptochrome 2 (photolyase-like) [Mus musculus] gi|74227568|dbj|BAE21836.1| unnamed protein product [Mus musculus] gi|123212126|emb|CAM20614.1| cryptochrome 2 (photolyase-like) [Mus musculus] gi|123220429|emb|CAM15994.1| cryptochrome 2 (photolyase-like) [Mus musculus] gi|148695658|gb|EDL27605.1| cryptochrome 2 (photolyase-like), isoform CRA_a [Mus musculus] gi|148695659|gb|EDL27606.1| cryptochrome 2 (photolyase-like), isoform CRA_a [Mus musculus] Length = 592 Score = 369 bits (948), Expect = e-100, Method: Composition-based stats. Identities = 129/503 (25%), Positives = 202/503 (40%), Gaps = 33/503 (6%) Query: 1 MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHF 60 M A A SVH W R LR+ DN AL AA + V V+I P + + F Sbjct: 16 MGADGASSVH--WFRKGLRLHDNPALLAAVRGARC-VRCVYILDPWFAASSSVGINRWRF 72 Query: 61 IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120 + SL + SL + + + + VT+L + E RD Sbjct: 73 LLQSLEDLDTSLRKLNSRLFVVRG----QPADVFPRLFKEWGVTRLTFEYDSEPFGKERD 128 Query: 121 KLLEKRLQH-RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPV 179 + K + V + + L I+ Q + +ALI + ++ V Sbjct: 129 AAIMKMAKEAGVEVVTENSHTLYDLDRIIELNGQKPPLTYKRFQALISRMELPKKPAVAV 188 Query: 180 PAIRLTGPVTPSNIPRFFDYPFQAIDPM-----------FPIGEQNALHILRKFCKEKVY 228 + ++ Y +++ + + GE AL L K + K + Sbjct: 189 SSQQMESCRAEIQENHDDTYGVPSLEELGFPTEGLGPAVWQGGETEALARLDKHLERKAW 248 Query: 229 YYVEQRDIPAIQGT----SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNE 284 +R + LSPYL G LS R + RL + + + + + S + Sbjct: 249 VANYERPRMNANSLLASPTGLSPYLRFGCLSCRLFYYRLWDLYKKVK-RNSTPPLSLFGQ 307 Query: 285 LIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLN 344 L+WREF+ P + P +I W+++ L W +G TGFP IDA M QL Sbjct: 308 LLWREFFYTAATNNPRFDRMEG-NPICIQIPWDRNPEALAKWAEGKTGFPWIDAIMTQLR 366 Query: 345 TIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSV 403 GW+H+ R A FL + DL V W G F LLD D + N G W W S Sbjct: 367 QEGWIHHLARHAVACFLTRGDLWVSWESGVRVFDELLLDADFSVNAGSWMW-LSCSAFFQ 425 Query: 404 PYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLD------KNDLSLNYP 457 +F + P G+R DP G +IR +LP+L P++YI+ P + + K + ++YP Sbjct: 426 QFFHCYCPVGFGRRTDPSGDYIRRYLPKLKGFPSRYIYEPWNAPESVQKAAKCIIGVDYP 485 Query: 458 LPIVDHKKACHHTLNQYYAAKKQ 480 PIV+H + + + +Q Sbjct: 486 RPIVNHAETSRLNIERMKQIYQQ 508 >gi|326384210|ref|ZP_08205892.1| deoxyribodipyrimidine photo-lyase [Gordonia neofelifaecis NRRL B-59395] gi|326197075|gb|EGD54267.1| deoxyribodipyrimidine photo-lyase [Gordonia neofelifaecis NRRL B-59395] Length = 480 Score = 369 bits (948), Expect = e-100, Method: Composition-based stats. Identities = 152/496 (30%), Positives = 225/496 (45%), Gaps = 44/496 (8%) Query: 8 SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67 S +VW R DLR++D +L AA +++ +AVF+ R A ++ F+ L Sbjct: 3 SPAIVWFRRDLRLSDLPSLSAAADRAESA-LAVFVLDDALVR--PSGAPRTTFLAGCLEA 59 Query: 68 VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127 + L + +V D ++ + V + + + RD+ +E L Sbjct: 60 LDADLGGRLLVV-------SGDPVQVIPELVDVLSVDSVHVSEDFGPYGRARDEAVEAAL 112 Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187 V + PG + A Y+V+TPF++A + + + + P L Sbjct: 113 PASVPLIRTGSPYAVSPGRVRTKAGGPYRVFTPFKRAWLDHGWHSPALTGPDTVDWLDPD 172 Query: 188 ----------VTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKE---KVYYYVEQR 234 V + + + GE+ AL R F ++ Y + R Sbjct: 173 SILPRGRIERVGRAAVAELLTEEASDAAALPVAGEKAALERWRAFRDGGTSELDRYADDR 232 Query: 235 DIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHL 294 + P + TS+LSPYL G L PR + DL + GA + +EL WR+FY + Sbjct: 233 NRPDLDATSRLSPYLKFGCLHPRTILH-------DLRARTDDGATTLRSELAWRDFYADV 285 Query: 295 MAFYPSVCMGKPFIPWTEKIEWNKDSHL---LQAWKQGYTGFPIIDAAMRQLNTIGWMHN 351 + P +++E++ AW +G TG+PI+DA MRQL GWMHN Sbjct: 286 LFHRPETART-GVDAKFDQMEYDSGPDADAAFDAWCRGRTGYPIVDAGMRQLLAEGWMHN 344 Query: 352 RLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNP 411 R+RMI ASFL KDL + W G YFM+ L+DGDLASN GWQW A G D+ PYFR+FNP Sbjct: 345 RVRMIVASFLTKDLHLPWWRGARYFMTHLVDGDLASNQHGWQWTAGCGTDAAPYFRVFNP 404 Query: 412 TIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWL----------DKNDLSLNYPLPIV 461 QG+RFDP G ++R W+PEL + + +H P D D YP PIV Sbjct: 405 VSQGERFDPSGDYVRRWVPELRGIAGKAVHRPWKHAGGRTAEPALFDGTDGDRGYPPPIV 464 Query: 462 DHKKACHHTLNQYYAA 477 DH + L +Y Sbjct: 465 DHAEERVVALARYRDL 480 >gi|123967845|ref|YP_001008703.1| putative DNA photolyase [Prochlorococcus marinus str. AS9601] gi|123197955|gb|ABM69596.1| putative DNA photolyase [Prochlorococcus marinus str. AS9601] Length = 477 Score = 369 bits (948), Expect = e-100, Method: Composition-based stats. Identities = 171/484 (35%), Positives = 245/484 (50%), Gaps = 30/484 (6%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 L W R DLRI DN+AL A S+A + + +I S+ ++ F+ SL ++ Sbjct: 7 LFWHRKDLRIFDNQALIKAFSLSNA-ITSTYIFDKNYSHDFNASS-RAWFLGNSLQELGN 64 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130 + + G + D + + + +F+NR E E+ RD ++K L+ + Sbjct: 65 NWKKMGSRLVMEEG----DPVLIIPKLAKKINAKFVFWNRSIEPYEINRDLQIKKNLKEQ 120 Query: 131 VI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKAL----------IQNLVQADLRSLPV 179 I D +L+ P I + Y VY PF K L Q+ V + + Sbjct: 121 NIQVIETWDHLLVEPLKIFSGNNNPYSVYGPFYKNLKSKMNLLGLYEQDKVGFQFKDIDN 180 Query: 180 PAIRLTGPVTPSNIPRFFD---YPFQAIDPMFPIGEQNALHILRKFCKEK-VYYYVEQRD 235 T + S + +F +P I P P GE A +L F EK +Y Y RD Sbjct: 181 KLKDKTINSSDSVLEKFIKNIKFPGSNICPCKP-GENAAETLLENFINEKKIYSYNSARD 239 Query: 236 IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPK-SGAFSWLNELIWREFYRHL 294 P+ GTS LS L G +S R+ WN DL + +W EL+WREFY+H Sbjct: 240 FPSHNGTSFLSASLRFGTISIRKVWNATLNLNSDLENQGNYLSIETWQKELVWREFYQHC 299 Query: 295 MAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLR 354 + +P + G P+ + W ++ Q W G TG PI+DAAMRQLN+ GWMHNR R Sbjct: 300 LFHFPELEKG-PYRKKWDHFRWQNNNEWFQHWSNGETGVPIVDAAMRQLNSTGWMHNRCR 358 Query: 355 MITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQ 414 MI ASFLVKDL+ +W++GE+ FM L+DGDLA+NNGGWQW+AS+G D P RIFNP Q Sbjct: 359 MIVASFLVKDLICNWQMGEKKFMETLVDGDLAANNGGWQWSASSGMDPKP-LRIFNPYTQ 417 Query: 415 GKRFDPQGTFIRHWLPELNNVPT-QYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQ 473 K+FDP +I++W+PEL+ V + ++ S L+KN +Y PIV+HK + Sbjct: 418 AKKFDPICEYIKYWIPELSKVSNSELLNGDISNLEKN----DYSSPIVNHKIQQRLFKSL 473 Query: 474 YYAA 477 Y Sbjct: 474 YAEI 477 >gi|257454814|ref|ZP_05620065.1| deoxyribodipyrimidine photo-lyase [Enhydrobacter aerosaccus SK60] gi|257447747|gb|EEV22739.1| deoxyribodipyrimidine photo-lyase [Enhydrobacter aerosaccus SK60] Length = 515 Score = 369 bits (948), Expect = e-100, Method: Composition-based stats. Identities = 178/512 (34%), Positives = 256/512 (50%), Gaps = 44/512 (8%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSD---AKVIAVFIATPEQWRQHGISARQSHFIYASL 65 ++L+W R DLR DN A A C ++ A VIAV TP+QW+ H S Q I + Sbjct: 1 MNLMWFRQDLRTFDNTAFAACCEHAQQNHAGVIAVVYLTPKQWQSHRKSLWQIDLILRQI 60 Query: 66 LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125 +++SLSQ I +F + C Q ++ LF N +Y +NEV RD+ + + Sbjct: 61 RALEQSLSQLNIGIIIRVVDDFASQATDVLELCQQLSISHLFANLEYPVNEVARDQYIAQ 120 Query: 126 RLQH-RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAI-- 182 + Q ++ + FDDS ++ P I+ YKV+TPF K + + L P PA Sbjct: 121 QAQSLGIVTQWFDDSQVVAPQRIVTDKGMPYKVFTPFYKRWLAMIETGGLTLSPTPAAMV 180 Query: 183 -------------------RLTGPVTPSNIPRFFDYPFQAIDP-----------MFPIGE 212 +T R + P A+D ++P GE Sbjct: 181 INTIQLAKDSRNTNTNTNTNTNDYITIDAFYRAYLIPTAALDKQLNHVSELAQLLYPAGE 240 Query: 213 QNALHILRKFCKEKVYYYVEQRDIPAIQ----GTSQLSPYLSIGVLSPRQCWNRLKEE-F 267 A L F K+ + Y RD+PA+ TS+LSPYL+IG+LSPR C+ +++ Sbjct: 241 AAAQSRLDDFLKKHIADYNTARDVPALNNHLGATSRLSPYLAIGMLSPRLCYLEARQKLN 300 Query: 268 VDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFI-PWTEKIEWNKDSHLLQAW 326 + + W++EL WR+FY +M P + GK F+ P E + W D ++W Sbjct: 301 SQQGLGSEKDIMRWISELAWRDFYYDVMVNRPDIVKGKAFLTPLDESVAWRYDLADFESW 360 Query: 327 KQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLA 386 QG TG P++DAAMR LN+ G+MHNRLRM+ A +L K+LL+DWR GE YFM L+DGD A Sbjct: 361 YQGKTGVPLVDAAMRCLNSTGFMHNRLRMVVAMYLSKNLLIDWRWGEAYFMQHLVDGDFA 420 Query: 387 SNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSW 446 SNNGGWQW+AS G D+ PYFR+ NP Q DP ++I+HW+PEL VP I+ Sbjct: 421 SNNGGWQWSASVGTDAQPYFRVMNPFSQAATHDPDASYIQHWVPELGTVPANIINDEQKL 480 Query: 447 LD--KNDLSLNYPLPIVDHKKACHHTLNQYYA 476 + YP K + + + Sbjct: 481 QTYLTQHPHIAYPTLDTPTKASRAMAIEAFKK 512 >gi|167628126|ref|YP_001678626.1| deoxyribodipyrimidine photo-lyase [Francisella philomiragia subsp. philomiragia ATCC 25017] gi|167598127|gb|ABZ88125.1| Deoxyribodipyrimidine photo-lyase [Francisella philomiragia subsp. philomiragia ATCC 25017] Length = 464 Score = 369 bits (947), Expect = e-100, Method: Composition-based stats. Identities = 151/483 (31%), Positives = 235/483 (48%), Gaps = 30/483 (6%) Query: 6 AMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASL 65 + + W R DLR+ DN AL+ A + I +FI Q AS Sbjct: 2 PKKIAIHWFRQDLRLADNPALHQASQADET--ITIFILDENQ-----------EIGGASK 48 Query: 66 LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125 L + SLS + +E + + +T ++NR Y+ + RD +++ Sbjct: 49 LWLHHSLSSLSKSLNNKLNFFSGNPLEIIKKLVKENNITDFYWNRCYDKYSIDRDTQIKQ 108 Query: 126 RLQHR-VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQ-NLVQADLRSLPVPAIR 183 LQ + + SF+ S+L+ P YKVYTPF K LI+ ++++ +++ Sbjct: 109 FLQEQDINVSSFNGSLLIEPWQCKKDDGTHYKVYTPFYKELIKIRKYRSNIVKPSFNSLK 168 Query: 184 LTGPVTPSNIPRFFD--YPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQG 241 + + + +Q I + IGE + IL +F KV Y RD + Sbjct: 169 KLETADELDSLKLLEPKLSWQNIIDQWQIGEDASHQILEEFLDGKVKEYKIARDFMSTDS 228 Query: 242 TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSV 301 TS+LSPYL G +SP Q +N ++ L + ++ EL+WR+F + + +YP + Sbjct: 229 TSKLSPYLHFGEISPNQIFNAVQ-----SLDYIGNNEEHFIKELVWRDFSYYQIYYYPEL 283 Query: 302 CMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFL 361 K + EW+ D+ LL+ W+ G TG PI+DA MR+L G+MHNR+RMI ASFL Sbjct: 284 -HNKNINQKFDSFEWDNDATLLKRWQTGQTGIPIVDAGMRELWQTGYMHNRVRMIVASFL 342 Query: 362 VKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQ 421 +K+ L+ W+ GE++F L D D ASNN WQW A G D+ PYFRIFNP +Q ++F+ Sbjct: 343 IKNCLIHWKYGEKWFFDTLFDADFASNNANWQWVAGCGLDAAPYFRIFNPVLQAEKFEAY 402 Query: 422 GTFIRHWLPELNNVPTQYIHAPHSWL------DKNDLSLNYPLPIVDHKKACHHTLNQYY 475 +IR ++PEL +P + + P L NYP P++D KK+ L + Sbjct: 403 -EYIRKYVPELKLLPNKLLAKPWEASNLVLQESGVKLGDNYPTPLIDLKKSRDKALELHK 461 Query: 476 AAK 478 Sbjct: 462 KLN 464 >gi|169236101|ref|YP_001689301.1| deoxyribodipyrimidine photo-lyase [Halobacterium salinarum R1] gi|47117035|sp|Q9HQ46|PHR_HALSA RecName: Full=Deoxyribodipyrimidine photo-lyase; AltName: Full=DNA photolyase; AltName: Full=Photoreactivating enzyme gi|148793|gb|AAA72749.1| photolyase (EC 4.1.99.3) [Halobacterium salinarum] gi|167727167|emb|CAP13953.1| deoxyribodipyrimidine photo-lyase [Halobacterium salinarum R1] Length = 481 Score = 369 bits (947), Expect = e-100, Method: Composition-based stats. Identities = 159/485 (32%), Positives = 229/485 (47%), Gaps = 22/485 (4%) Query: 9 VHLVWLRNDLRITDNKALYAAC--------HNSDAKVIAVFIATPEQWRQHGISARQSHF 60 + L W R DLR TDN+ L AA + V AVF E + + F Sbjct: 1 MQLFWHRRDLRTTDNRGLAAAAPGVTAVDGGHDQGPVAAVFCFDDEVLA--HAAPPRVAF 58 Query: 61 IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120 + +L +++ G D L + T++ +N Y RD Sbjct: 59 MLDALAALRERYRDLGSDLIVRHG----DPAAVLPAVANDLDATRVVWNHDYSGLATDRD 114 Query: 121 KLLEKRLQHRVICK-SFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLV-QADLRSLP 178 + L + F D+V PG I +A Y VYT F + P Sbjct: 115 AGVRDALDAAGVAHAQFHDAVHHRPGEIRTNAGDPYSVYTYFWRKWQDREKNPPAPEPEP 174 Query: 179 VPAIRLTGPVTPSNIPRFFDYPFQAIDPMFP-IGEQNALHILRKFCK-EKVYYYVEQRDI 236 T S +P + F + P G A +L F + +Y Y ++RD Sbjct: 175 ADLAADTALADTSPLPSVQELGFAEPEAAVPDAGTAAARSLLDAFRESGDIYRYEDRRDY 234 Query: 237 PAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPK-SGAFSWLNELIWREFYRHLM 295 P + TS+LSP+L G + R + + D + +++ +L WREFY ++ Sbjct: 235 PHEEPTSRLSPHLKFGTIGIRTVYEAARAAKSDADTDDERENVAAFIGQLAWREFYAQVL 294 Query: 296 AFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRM 355 F +V + + F + IEW D LQAWK G TG+PI+DA MRQL +MHNR+RM Sbjct: 295 YFNQNV-VSENFKAYEHPIEWRDDPAALQAWKDGETGYPIVDAGMRQLRAEAYMHNRVRM 353 Query: 356 ITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQG 415 I A+FL KDLLVDWR G ++F +L D D A++NGGWQWAASTG D+ PYFR+FNP QG Sbjct: 354 IVAAFLTKDLLVDWRAGYDWFREKLADHDTANDNGGWQWAASTGTDAQPYFRVFNPMTQG 413 Query: 416 KRFDPQGTFIRHWLPELNNVPTQYIHAPH--SWLDKNDLSLNYPLPIVDHKKACHHTLNQ 473 +R+DP +I ++PEL +VP IH+ H S ++ + YP PIVDH + + Sbjct: 414 ERYDPDADYITEFVPELRDVPADAIHSWHELSLSERRRHAPEYPDPIVDHSQRREDAIAM 473 Query: 474 YYAAK 478 + A+ Sbjct: 474 FERAR 478 >gi|317968588|ref|ZP_07969978.1| deoxyribodipyrimidine photolyase [Synechococcus sp. CB0205] Length = 479 Score = 369 bits (947), Expect = e-100, Method: Composition-based stats. Identities = 168/483 (34%), Positives = 230/483 (47%), Gaps = 23/483 (4%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 L W R DLR+ DN AA + V VF+ P ++ + F+ SL ++Q Sbjct: 7 LFWHRRDLRLVDNLG-LAAAAAATLAVTGVFVLDPAILSAADMAPARVWFLLESLKELQA 65 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130 S + G Q D E L + +NR E RD+ + LQ + Sbjct: 66 SWRKAGSQLLLLQG----DPAEVLPQLAKAIGAGVVAWNRDVEPYGRERDRRVAAALQAQ 121 Query: 131 VICKSF-DDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQAD------LRSLPVPAIR 183 D +L+ P ++ Y+VY PF++ + + RS P + Sbjct: 122 GQKVLVDWDQLLVAPEALKTGGGDPYRVYGPFKRNWFGQVERRAEAGELAPRSAPQGLLA 181 Query: 184 LTGPVT-PSNIPRFFDYPFQAIDPMFPI---GEQNALHILRKFCKE-KVYYYVEQRDIPA 238 G + + +P + GE A L FC + Y R++P Sbjct: 182 YDGELPVLAELPSLESLGKTFLGAELCPCRPGEAAAKQQLEAFCDGGPLLSYEPGRNMPG 241 Query: 239 IQGTSQLSPYLSIGVLSPRQCWNRLKEEFV-DLLIKPKSGAFSWLNELIWREFYRHLMAF 297 GTS LS L G LSPRQ W+ ++ + + W EL WREFY+ + Sbjct: 242 EAGTSGLSAALKFGTLSPRQAWDAAQQAKALARSDEQRESIQVWEQELAWREFYQQALFH 301 Query: 298 YPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMIT 357 +P + G P+ P + W D QAW G TG PIIDAAMRQLN GWMHNR RMI Sbjct: 302 FPELADG-PYRPQWKLFPWENDPDRYQAWCDGLTGMPIIDAAMRQLNESGWMHNRCRMIV 360 Query: 358 ASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKR 417 AS+LVKDL+ DWR+GE FM++L+DGDLA+NNGGWQW+AS+G D P RIFNP Q + Sbjct: 361 ASYLVKDLICDWRLGETAFMARLVDGDLAANNGGWQWSASSGMDPKP-LRIFNPATQASK 419 Query: 418 FDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477 FDP+G +IR WLPEL++V T+ + + + YP PIV HKK H Y + Sbjct: 420 FDPEGDYIRRWLPELSHVNTKDLLSGEITPMERR---GYPAPIVSHKKQQAHFKALYASL 476 Query: 478 KKQ 480 K Sbjct: 477 PKA 479 >gi|170079261|ref|YP_001735899.1| DNA photolyase [Synechococcus sp. PCC 7002] gi|169886930|gb|ACB00644.1| DNA photolyase [Synechococcus sp. PCC 7002] Length = 514 Score = 369 bits (947), Expect = e-100, Method: Composition-based stats. Identities = 142/488 (29%), Positives = 228/488 (46%), Gaps = 30/488 (6%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQ-----HGISARQSHFIYASL 65 L+W R DLR+ D++ L A A++ + P + A + F+ ++ Sbjct: 7 LLWYRRDLRLHDHQPLQEALAQ-QAQIFPFYCFDPRGFGSIGLDFPKTGAFRGQFLREAI 65 Query: 66 LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125 ++++L KG Q D + + C Q ++ ++ +R+ E R ++ L + Sbjct: 66 QDLRQNLRAKGSDLIVRQ----DIPEKLIPDLCQQWQIDVVYCHREVTAEETRVERKLRQ 121 Query: 126 RLQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL 184 LQ + + ++F + L PG + ++ +V+T FRK + + A P L Sbjct: 122 ALQEQGVRVETFWGTTLHDPGDLPFGINEVPEVFTQFRKDVEKYAAIASPVPTPTQLPPL 181 Query: 185 TGPVTPSNIPRFFDY--PFQAIDPM----FPIGEQNALHILRKFCKE--KVYYYVEQRD- 235 V P IP D P IDP GE + L+ + E ++ Y E R+ Sbjct: 182 PETVAPGEIPSLQDLGLPEPTIDPRGVLPLKGGETAGMKRLQAYFWEGDRLKVYKETRNG 241 Query: 236 IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLM 295 + +S+ SP+L++G LS R ++ E + + + + EL+WR+++R + Sbjct: 242 LLGADYSSKFSPWLALGCLSARYIAAQVAEYEQKRI--ANNSTYWLIFELLWRDYFRWIC 299 Query: 296 AFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRM 355 A + + +P KI W +D + W+ G TG P +DA MR+L G+M NR R Sbjct: 300 AKHGNQIF-QPEGLQGVKIPWKQDHEAFELWRTGQTGIPFVDANMRELLYTGFMSNRGRQ 358 Query: 356 ITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQG 415 SFL K+L +DWR G +F SQL+D D+ SN G W + A GND+ FR FN Q Sbjct: 359 NVGSFLTKNLGIDWRWGAAWFESQLIDYDVCSNWGNWNYTAGVGNDARG-FRYFNIPKQA 417 Query: 416 KRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKN------DLSLNYPLPIVDHKKACHH 469 K +DPQG ++RHWLPEL +P + IH P K L YP P+VD + + Sbjct: 418 KDYDPQGDYVRHWLPELAALPGEQIHQPWRLSVKELGDRQIILGETYPKPMVDLQTSVQE 477 Query: 470 TLNQYYAA 477 Y A Sbjct: 478 NERIYQKA 485 >gi|32490931|ref|NP_871185.1| hypothetical protein WGLp182 [Wigglesworthia glossinidia endosymbiont of Glossina brevipalpis] gi|25166137|dbj|BAC24328.1| phrB [Wigglesworthia glossinidia endosymbiont of Glossina brevipalpis] Length = 475 Score = 369 bits (947), Expect = e-100, Method: Composition-based stats. Identities = 190/474 (40%), Positives = 278/474 (58%), Gaps = 10/474 (2%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M +L+W R DLR+ DN ALY AC + + I ++W + +S + F+Y ++ Sbjct: 1 MIDNLIWFRKDLRLNDNPALYYACVDEYKSASGILILNKKKWNEKIVSKNRIRFMYKNIF 60 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 ++++L + GI ++ C +F + L ++C +V +L++N+ E ++ DK++ K+ Sbjct: 61 SLKRNLKKIGIELIFYTCRDFFEYTCLLYNFCYTNKVKELYFNKGIEKEDLEEDKIIIKK 120 Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 L+ C F+ ++L+ P I N + YKVY+ F K+ I + ++ +P P IR Sbjct: 121 LKKITKCICFNGNLLIDPEKIKNKNKKTYKVYSYFLKSCISFISNNNINIIPFPKIRKNK 180 Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246 N+ + ++ + + P E++AL+ L F K K+ Y RD I TS LS Sbjct: 181 L----NLIKSYNDSIKIKKKLSPCYEEHALNKLNNFIKLKINKYHITRDF-CINSTSFLS 235 Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP 306 PY++IGVLS R+C N +K D + K SG F W +E+IWREF HL+ Y K Sbjct: 236 PYINIGVLSLRECINNIKNNNFDFIEKKNSGHFKWFSEIIWREFCHHLIIEYSDFFDSKK 295 Query: 307 FIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLL 366 I WT+ I+W +QAWK G TGFPIIDAAMRQL GWMHNRLRMIT+SFLVKDLL Sbjct: 296 LIKWTKYIKWENKIKKIQAWKNGTTGFPIIDAAMRQLKKTGWMHNRLRMITSSFLVKDLL 355 Query: 367 VDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIR 426 VDW+IGE+YF L+DG+ A NN WQW +S+G S PYFR+ NP Q K+F +I+ Sbjct: 356 VDWKIGEKYFYYHLIDGNSAINNFNWQWISSSGICSSPYFRMINPITQSKKFKSIYKYIK 415 Query: 427 HWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQ 480 W+PEL N+P IH P++W+ KN + NYP I++HK A +N + A KK Sbjct: 416 FWIPELKNIPFNEIHEPYNWIIKNKI--NYPNQIIEHKTA---KINFFKACKKA 464 >gi|116075564|ref|ZP_01472823.1| Deoxyribodipyrimidine photolyase [Synechococcus sp. RS9916] gi|116066879|gb|EAU72634.1| Deoxyribodipyrimidine photolyase [Synechococcus sp. RS9916] Length = 492 Score = 368 bits (946), Expect = e-100, Method: Composition-based stats. Identities = 158/499 (31%), Positives = 220/499 (44%), Gaps = 37/499 (7%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHG----ISARQSHFIY 62 S L W R DLR+ DNK L AA A V V++ P ++ + F+ Sbjct: 3 ASRTLFWHRRDLRLADNKGLQAAAALGSA-VTGVYVLDPAIITPPHHLPPMAPARLWFLV 61 Query: 63 ASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKL 122 +L ++Q+ G D + L L ++R E RD+ Sbjct: 62 ETLRELQQRWRDAGSRLIV----VAGDPVAVLPRLAALLEAPTLVWSRDVEPYARERDRQ 117 Query: 123 LEKRLQHRVICKSF-DDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPA 181 + K LQ D +L+ P + Y+VY PF + + + + ++ P Sbjct: 118 VAKALQADGRKVLVDWDQLLVAPELLKTGGGDPYRVYGPFLRNWRGQVERTEPSTVEAPT 177 Query: 182 I--------------------RLTGPVTPSNIPRFFDYPFQAIDPMFP-IGEQNALHILR 220 RL ++ F+ ++ GE A L Sbjct: 178 GLCDLESEQLEAISSGAGDLGRLCAEGQRELERLQVEHGFRGMELCPCRPGEAAAAEQLA 237 Query: 221 KFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKE-EFVDLLIKPKSGAF 279 F + Y R+ P + GTS LS LS+G LSPRQ W +E + + + + Sbjct: 238 TFVDGPLLAYEPDRNFPGVVGTSYLSAALSVGTLSPRQAWCAAQEMKGLARSDEQRQAIT 297 Query: 280 SWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAA 339 W EL WREFY+ + +P + G P+ + W + WK G TG PIIDAA Sbjct: 298 VWEQELGWREFYQQALFHFPELANG-PYRDQWRRFPWENNEDWFDFWKDGQTGMPIIDAA 356 Query: 340 MRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTG 399 MRQLN GWMHNR RMI AS+LVKDL+ DWR GE FM +DGDLA+NNGGWQW+AS+G Sbjct: 357 MRQLNETGWMHNRCRMIVASYLVKDLICDWRWGERAFMELEVDGDLAANNGGWQWSASSG 416 Query: 400 NDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLP 459 D P RIFNP Q +FD G +IR W+PEL +V T+ + S YP Sbjct: 417 MDPKP-LRIFNPATQASKFDADGDYIRRWVPELRHVNTKDL---LSGEIAALERRGYPEL 472 Query: 460 IVDHKKACHHTLNQYYAAK 478 +V+HK Y + Sbjct: 473 LVNHKTQQARFKALYATIR 491 >gi|71023993|ref|XP_762226.1| hypothetical protein UM06079.1 [Ustilago maydis 521] gi|46101669|gb|EAK86902.1| hypothetical protein UM06079.1 [Ustilago maydis 521] Length = 655 Score = 368 bits (946), Expect = e-100, Method: Composition-based stats. Identities = 180/526 (34%), Positives = 264/526 (50%), Gaps = 61/526 (11%) Query: 11 LVWLR-NDLRITDNKALYAACHNS--------DAKVIAVFIATPEQWRQHGISARQSHFI 61 + W+R +DLRI DN+AL A + +IA+F+ TP + H AR+ F+ Sbjct: 125 VYWMRMHDLRIHDNRALAHASSLAAARRKNGKGGHLIALFVITPADYSAHDRGARRIDFV 184 Query: 62 YASLLQVQKSLSQKGIVFQYHQ--CSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRR 119 +L ++ + I F + + E + S C Q ++L N +YE++E+ R Sbjct: 185 LRTLASLKSQFDKLDIPFVVYTYSGEDRAQVGEKVFSLCEQCDASQLTANIEYEVDELWR 244 Query: 120 D-KLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQ------- 171 D +LE + + V D ++PPG I + + Y V++P+ + +++ + Sbjct: 245 DLAMLEAKDKKGVSFSLLHDCYVVPPGRIKTNDGRPYSVFSPWNRRWTESISKDMSLIEA 304 Query: 172 --------------ADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALH 217 L +L + TG P + F + + ++P +Q A Sbjct: 305 SEDPEANPKSIRSHPKLGALFELSKLGTGYGIPEELSGFECKDREYMAKLWPATDQAAHQ 364 Query: 218 ILRKFCKE--------------------------KVYYYVEQRDIPAIQGTSQLSPYLSI 251 +L F K ++ Y E R++ + GTS++SPYL+ Sbjct: 365 VLDNFIKGKGGETALDRAANEPSTAEVGANAKDSRLARYAEGRNLLSENGTSRISPYLAA 424 Query: 252 GVLSPRQCWNRLKEEFV-DLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPW 310 GV+S R+C R K+ L + SG W E+ +R+FY H++A +P VCMG FI Sbjct: 425 GVVSARECLRRTKQLTKGKLHVGRDSGVAMWNTEISFRDFYAHVLAAWPKVCMGHAFITK 484 Query: 311 TEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWR 370 E + W DS L AWKQG TG+PI+DAA RQ G++HNR RMI+A FL K LL DWR Sbjct: 485 YEDVVWETDSSTLDAWKQGRTGYPIVDAAQRQCIQQGYIHNRGRMISAMFLTKHLLHDWR 544 Query: 371 IGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLP 430 GE +F +D D ASNNGGWQW+ASTG D PYFRIFNP Q ++ DP G +IRH++P Sbjct: 545 HGERHFSLNFIDQDFASNNGGWQWSASTGTDPQPYFRIFNPLSQSEKCDPHGDYIRHFVP 604 Query: 431 ELNNVPTQYIHAPHSWLDKNDLS-LNYPLPIVDHKKACHHTLNQYY 475 EL NV IH P L K + L YP PIV+H +A L +Y Sbjct: 605 ELKNVKGNAIHDPFHRLSKAEFEKLGYPKPIVEHAQARQRALKRYK 650 >gi|126642518|ref|YP_001085502.1| deoxyribodipyrimidine photolyase (photoreactivation) FAD-binding [Acinetobacter baumannii ATCC 17978] Length = 381 Score = 368 bits (946), Expect = e-100, Method: Composition-based stats. Identities = 171/380 (45%), Positives = 230/380 (60%), Gaps = 13/380 (3%) Query: 107 FYNRQYEINEVRRDKLLEKRL-QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKAL 165 + N + +NE++RDK ++ L +H F D + P SI N + Q Y+V++ F+KA Sbjct: 2 YANIEIGVNELKRDKTVQDYLNRHGKELFLFHDRTIFPLRSIRNQSQQPYQVFSAFKKAC 61 Query: 166 IQNLVQADLR-SLPVPAIRLTGP--------VTPSNIPRFFDYPFQAIDP-MFPIGEQNA 215 L + L PVP + P + I + F ++P+GEQ A Sbjct: 62 YTKLDTSGLPQCYPVPNKQNEVPLDFLQGKNIDLDEIEKLFCSSLSKEQQDLWPVGEQYA 121 Query: 216 LHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPK 275 L L +F +E V +Y +RD P IQ TS+LSPYL+IG+LS RQC L Sbjct: 122 LEQLDQFIEESVCHYKVERDFPNIQATSKLSPYLNIGILSIRQCLQALFRNQHGNFHLVN 181 Query: 276 SGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPI 335 G +WL+EL+WREFY+H++ +P V PF T+KI+WN + L AW+ G TG PI Sbjct: 182 EGQQTWLDELLWREFYQHILFDFPHVSKHIPFKKDTQKIKWNHNPEHLTAWQMGQTGIPI 241 Query: 336 IDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWA 395 +DA MRQL GWMHNR+RMITA FL K+LL+DWRIGE++FM L+DGDLA+NNGGWQW Sbjct: 242 VDAGMRQLLQTGWMHNRVRMITAMFLCKNLLIDWRIGEQWFMQHLIDGDLAANNGGWQWC 301 Query: 396 ASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLN 455 ASTG D+VPYFRIFNP Q K+FDP+G +IR W+ EL ++ + IH P+S K DL LN Sbjct: 302 ASTGTDAVPYFRIFNPITQSKKFDPEGEYIRQWVKELAHLDNKTIHEPYS--SKTDLGLN 359 Query: 456 YPLPIVDHKKACHHTLNQYY 475 YP PIVD K+ + + Sbjct: 360 YPKPIVDLKETRLKAIETFK 379 >gi|326799093|ref|YP_004316912.1| deoxyribodipyrimidine photo-lyase [Sphingobacterium sp. 21] gi|326549857|gb|ADZ78242.1| Deoxyribodipyrimidine photo-lyase [Sphingobacterium sp. 21] Length = 437 Score = 368 bits (946), Expect = e-100, Method: Composition-based stats. Identities = 161/475 (33%), Positives = 230/475 (48%), Gaps = 51/475 (10%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQW-RQHGISARQSHFIYASLLQVQ 69 + W R DLR+ DN ALY A S KV VFI + + FI+ L + Sbjct: 9 IFWFRRDLRLQDNHALYEALR-SGYKVQPVFIFDTAILSKLEDRDDARVSFIHRELRAIN 67 Query: 70 KSLSQK--GIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127 K L Q+ GI F + D+ + + + +++N YE +RDK + L Sbjct: 68 KQLEQQSSGIAFYH------DEPNKAWEEIVKEFDPIAVYFNHDYEPYARKRDKEISDFL 121 Query: 128 QH-RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 + + +F D V+ +L + Y V+TP+R + L ++ L++ P Sbjct: 122 RQYHIAVYTFKDQVIFEKEEVLKSNGEPYTVFTPYRNCWLAQLGESHLKNYPSERHLAAL 181 Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ-GTSQL 245 IP + F A FP A+ + Y + RDIPA + GTS L Sbjct: 182 RSHWQTIPTLKELGFVATKQTFPSKSYKAV----------IGDYHQTRDIPADEKGTSHL 231 Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305 S +L G +S R ++ +WLNELIWREFY ++ +P + K Sbjct: 232 SVHLRFGTVSIRSLIKDARQASEK----------TWLNELIWREFYMMILWHFPE-TVNK 280 Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365 F ++I W + AW QG TG+P++DA MRQLN G+MHNR+RM+ ASFL K L Sbjct: 281 AFKSAYDRIHWRNNESEFDAWCQGKTGYPLVDAGMRQLNETGFMHNRVRMVVASFLCKHL 340 Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425 L+DWR GE YF +L D + +SN G WQWAA +GND+ PYFR+FNP IQ K+FDP+ + Sbjct: 341 LIDWRWGEAYFARKLQDYEQSSNVGNWQWAAGSGNDAAPYFRVFNPEIQLKKFDPKLVYA 400 Query: 426 RHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQ 480 + W+PEL++ YP PI++HKKA L Y A K Sbjct: 401 KRWIPELDD------------------PFRYPSPIIEHKKARERALEVYKNALKD 437 >gi|13605525|gb|AAK32756.1|AF361588_1 AT4g08920/hy4 [Arabidopsis thaliana] Length = 681 Score = 368 bits (946), Expect = e-100, Method: Composition-based stats. Identities = 137/490 (27%), Positives = 225/490 (45%), Gaps = 25/490 (5%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 +VW R DLR+ DN AL AA V A+F+ PE+ + ++ SL Q+ Sbjct: 15 IVWFRRDLRVEDNPALAAAVRAG--PVNALFVWAPEEEGHYHPGRVSRWWLKNSLAQLDS 72 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL-QH 129 SL G + + DS+ L +++F+N Y+ + RD + L Sbjct: 73 SLRSLGTCLITKRST---DSVASLLDVVKSTGASQIFFNHLYDPLSLVRDHRAKDVLTAQ 129 Query: 130 RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189 + +SF+ +L P + + + + ++ F + + + LP I Sbjct: 130 GIAVRSFNADLLYEPWEVTDELGRPFSMFAAFWERCLSMPYDPESPLLPPKKIISGDVSK 189 Query: 190 PSNIPRFFDYPFQA-----IDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244 P F+ + + + G N L F + Y + R TS Sbjct: 190 CVADPLVFEDDSEKGSNALLARAWSPGWSNGDKALTTFINGPLLEYSKNRRKADSATTSF 249 Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFS----WLNELIWREFYRHLMAFYPS 300 LSP+L G +S R+ ++ ++ + V + +L + RE+ R++ +P Sbjct: 250 LSPHLHFGEVSVRKVFHLVRIKQVAWANEGNEAGEESVNLFLKSIGLREYSRYISFNHP- 308 Query: 301 VCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASF 360 +P + + W D + +AW+QG TG+P++DA MR+L GW+H+R+R++ +SF Sbjct: 309 YSHERPLLGHLKFFPWAVDENYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSF 368 Query: 361 LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDP 420 VK L + WR G +YF LLD DL S+ GWQ+ T DS + RI NP +G +FDP Sbjct: 369 FVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYITGTLPDSREFDRIDNPQFEGYKFDP 428 Query: 421 QGTFIRHWLPELNNVPTQYIHAPHSWLDKN------DLSLNYPLPIVDHKKACHH---TL 471 G ++R WLPEL+ +PT +IH P + + +L NYPLPIV +A L Sbjct: 429 NGEYVRRWLPELSRLPTDWIHHPWNAPESVLQAAGIELGSNYPLPIVGLDEAKARLHEAL 488 Query: 472 NQYYAAKKQS 481 +Q + + S Sbjct: 489 SQMWQLEAAS 498 >gi|212639063|ref|YP_002315583.1| Deoxyribodipyrimidine photolyase [Anoxybacillus flavithermus WK1] gi|212560543|gb|ACJ33598.1| Deoxyribodipyrimidine photolyase [Anoxybacillus flavithermus WK1] Length = 468 Score = 368 bits (946), Expect = e-100, Method: Composition-based stats. Identities = 163/476 (34%), Positives = 246/476 (51%), Gaps = 23/476 (4%) Query: 7 MSVHLVWLRNDLRITDNKALYAACH---NSDAKVIAVFIATPEQWRQHGISARQSHFIYA 63 M +VW R D R+ D+ AL A K++ F P ++ + + Sbjct: 4 MHTAVVWFRRDFRLHDHTALVHALRWAKERQGKLLFFFHFDPYFAKERTY---HHEYFFQ 60 Query: 64 SLLQVQKSLSQK-GIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKL 122 ++ Q ++ L GI D + + + +F+N+ RD+ Sbjct: 61 TVEQFRQMLRHLYGIHVHILHGDIDDVFVRLISRTHM----NAIFFNKDEVGRGKERDEY 116 Query: 123 LEKRLQH-RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLR---SLP 178 + LQ + ++DD+ L +L YKVYTP+ +A + + L L Sbjct: 117 VRTLLQKYGIDVYTYDDAHLHGAFEVLKADGTPYKVYTPYYRAWRKRPKRFPLSIDIDLL 176 Query: 179 VPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPA 238 + P++ + + Q EQ+ALH+L++F + YY QRDIPA Sbjct: 177 RAHMLQITPLSEYDEHMLKMWLSQCTKRWERTSEQDALHVLQQFIDTSLPYYHRQRDIPA 236 Query: 239 IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFY 298 + GTS+LSP+L G LS R ++ + ++F + + +++ EL WR+FY + A + Sbjct: 237 VSGTSRLSPHLKTGTLSIRTVFHAVAQQFGNGYDEA---VETYIKELAWRDFYHMIYAHF 293 Query: 299 PSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITA 358 P + FI + W++D +AWK+G TGFP++DA MRQL GWMHNRLRMI A Sbjct: 294 P-FTKTEAFIEKYRHLPWSRDDERFEAWKEGKTGFPLVDAGMRQLKEEGWMHNRLRMIAA 352 Query: 359 SFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRF 418 SFL KD L+DWR+GE+YF L+D D ASN GGWQWAAS G D+VPYFR+FNP Q K+F Sbjct: 353 SFLTKDYLIDWRMGEQYFQHMLIDYDEASNIGGWQWAASVGTDAVPYFRVFNPIEQSKKF 412 Query: 419 DPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQY 474 DP GT+IR ++ EL + P+ YIH P K+++ +YP P VDH+ + + Sbjct: 413 DPDGTYIRTYVQELASFPSLYIHEPW----KSNIQTDYPAPTVDHQLQRQRAIALF 464 >gi|209543430|ref|YP_002275659.1| Deoxyribodipyrimidine photo-lyase [Gluconacetobacter diazotrophicus PAl 5] gi|209531107|gb|ACI51044.1| Deoxyribodipyrimidine photo-lyase [Gluconacetobacter diazotrophicus PAl 5] Length = 463 Score = 368 bits (946), Expect = e-100, Method: Composition-based stats. Identities = 150/469 (31%), Positives = 224/469 (47%), Gaps = 35/469 (7%) Query: 6 AMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASL 65 A + +VW R D RI DN AL A + + I H A +++ ++ Sbjct: 5 APAPTIVWFREDFRIADNMALLEA-EKRGQPTLCIVILDD----AHLPGAAARWWLHGAI 59 Query: 66 LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125 + ++L G + + L + +F+NR+Y+ D ++ Sbjct: 60 RSLDETLRGMGGALHVFRGAAR----AVLAEIVRKTGAGAVFWNRRYDPAGREADTAIKA 115 Query: 126 RLQHRV-ICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADL---------- 174 L+ R +SF ++L P S+ + YK++T F +A Sbjct: 116 DLRARGLTVRSFPGALLHEPWSVCTRSGAPYKIFTAFWRAACALPAPFPPHPAPERLVFA 175 Query: 175 RSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQR 234 P+P +T +PR D+ + M+ GE+ A L F + Y R Sbjct: 176 PPPPMPDSLITRHEQDGLLPRHPDW-AGGLRDMWSPGEEEAGDQLSDFLRHDGAGYATAR 234 Query: 235 DIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHL 294 D P + TS+LSP+L G +SP Q W+ K+ +L EL WR+F L Sbjct: 235 DFPGDEATSRLSPFLRFGHVSPAQVWHAATR---------KACPDKFLMELGWRDFAWSL 285 Query: 295 MAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLR 354 + F P + + P + + W D L AW++G TG+P++DA MR+L GWMHNR+R Sbjct: 286 LFFNPDLAT-RNLRPEFDAMPWRHDPGGLAAWQRGQTGYPLVDAGMRELWHTGWMHNRVR 344 Query: 355 MITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQ 414 M+ ASFLVK LL+DWR GE +F L+D D ASN WQW A TG D+ PYFR+ NP +Q Sbjct: 345 MVAASFLVKHLLIDWREGERWFADTLVDHDPASNPMNWQWNAGTGVDAAPYFRVMNPILQ 404 Query: 415 GKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDH 463 ++FDP G +IR W+PEL ++ IHAP ++ + YP PIVDH Sbjct: 405 SRKFDPHGVYIRRWVPELAHLSDDAIHAPW----ESGATHPYPAPIVDH 449 >gi|259416145|ref|ZP_05740065.1| deoxyribodipyrimidine photo-lyase type I [Silicibacter sp. TrichCH4B] gi|259347584|gb|EEW59361.1| deoxyribodipyrimidine photo-lyase type I [Silicibacter sp. TrichCH4B] Length = 474 Score = 368 bits (945), Expect = e-99, Method: Composition-based stats. Identities = 152/484 (31%), Positives = 235/484 (48%), Gaps = 26/484 (5%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 + W+R DLR+ DN AL AA +I ++I P + + A + L + Sbjct: 6 PVIWWIRRDLRLRDNPALTAALETG-GPIIPLYIHDP---QDEALGAAPKFRLGLGLERF 61 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128 K+L G + D++E L + + ++R Y+ ++RD ++++L+ Sbjct: 62 AKTLEGHGSRLTLRKG----DALEVLREVIKESGAGHVVWSRLYDPEAIKRDTEIKEQLK 117 Query: 129 HR-VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQN----LVQADLRSLPVPAIR 183 + KS ++ P ++ MYKVYTPF KA+ L+ A A Sbjct: 118 AADITVKSTGGRLMFEPWTVETKDGGMYKVYTPFWKAVRDREVEGLIDAPANLPKPDAWP 177 Query: 184 LTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS 243 T + NI + + +G+ AL L +F +E+V Y RD P+ TS Sbjct: 178 ATDELADYNISAAMRRGAEIVAGYCRVGDDAALEQLDRFLEERVQTYKADRDFPSRAATS 237 Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCM 303 +LS L+ G +SP + W+ + D K GA +L E++WREF HLM P + Sbjct: 238 ELSENLAWGEISPHRMWHLGAQAMRD----GKQGAEHFLKEVVWREFAYHLMYHSPHILT 293 Query: 304 GKPFIPWTEKIEWNKDS-HLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLV 362 + + + W D L W+QG TG+ +DAAMR+L G MHNR RMI ASFL Sbjct: 294 -RNWREEWDGFPWQDDPGEALLRWQQGQTGYDFVDAAMRELYVTGKMHNRARMIVASFLT 352 Query: 363 KDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQG 422 K L++ W+ G ++F L+D D ASN GWQW A +G D+ P+FRIFNP Q ++FDP+G Sbjct: 353 KHLMIHWKFGMQWFEDCLVDWDPASNAMGWQWVAGSGPDAAPFFRIFNPDGQLEKFDPKG 412 Query: 423 TFIRHWLPELNNVPTQ-----YIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477 ++R+WL E + P Q + P SW + PI+D K+ L Y+ + Sbjct: 413 RYVRNWLAEGQSDPPQTATDFFAATPLSWELSAKDTRA--RPIIDLKRGRERALEAYHDS 470 Query: 478 KKQS 481 + +S Sbjct: 471 RDKS 474 >gi|312214969|emb|CBX94922.1| hypothetical protein [Leptosphaeria maculans] Length = 633 Score = 368 bits (945), Expect = 1e-99, Method: Composition-based stats. Identities = 150/488 (30%), Positives = 227/488 (46%), Gaps = 35/488 (7%) Query: 12 VWLR-NDLRITDNKALYAA---CHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67 W DLRI DN AL+ A + ++ V++ HG SA + F+Y L Sbjct: 149 HWFHPKDLRIQDNTALHHASQLAQKNKQHLVCVYVNCAADESWHGTSAARVDFMYEGLKL 208 Query: 68 VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127 +QK L I + +C N D + + S+ +Q V+ +F N +YEI+E+RRD L K + Sbjct: 209 IQKELKDLNIPLVFLECENRKDIVSTVISWFKEQGVSHVFGNIEYEIDEIRRDIKLVKTI 268 Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187 + D ++ PG++L + + K++TP+ KA + + P + Sbjct: 269 GDDIQVSLHHDQTVVEPGTMLTGSGKPMKIFTPYFKAWLDIVKDQPSLLDTNPPPAVNPA 328 Query: 188 VTPSNIPRFFDYPF---------------QAIDPMFPIGEQNALHILRKFCKEKVYYYVE 232 ++ FD P + I +P G A + KF K + Y Sbjct: 329 SAKQDLESLFDTPAPRPAKDKQFENDEDKKRIRKFWPPGYTAASTRMDKFLKH-IPNYAA 387 Query: 233 QRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVD----LLIKPKSGAFSWLNELIWR 288 R P+ TS+LSPY S G+ S R ++ + +G ++W+ E+++R Sbjct: 388 TRSDPSKDSTSRLSPYFSAGMYSVRSALRKVTDYNRGSTDFRESAASAGVYAWVREIVFR 447 Query: 289 EFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGW 348 E YR P M P + W + QAW G TG P +DA MRQL W Sbjct: 448 ELYRQTTLCTPHTSMNLPQNLKFNSVRWEDNEDHWQAWINGQTGVPFVDAGMRQLAHEAW 507 Query: 349 MHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRI 408 MHNRLRM +S+L +LL+D+R GE YF L+D DL +N GW+ P + + Sbjct: 508 MHNRLRMNVSSYLYCNLLLDYRRGERYFAETLIDWDLGNNTQGWE----------PSYTV 557 Query: 409 FNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLS-LNYPLPIVDHKKAC 467 FNPT Q ++ DP G FIR W+PEL NV + + APH L + L YP P VD ++ Sbjct: 558 FNPTSQAEKNDPDGAFIRKWVPELRNVQGKAVFAPHERLSGTEFEQLGYPRPCVDWRQTK 617 Query: 468 HHTLNQYY 475 L+++ Sbjct: 618 ERCLSRFK 625 >gi|255964973|gb|ACU44659.1| cryptochrome 1 [Medicago sativa] Length = 676 Score = 368 bits (945), Expect = 1e-99, Method: Composition-based stats. Identities = 141/499 (28%), Positives = 231/499 (46%), Gaps = 27/499 (5%) Query: 3 ATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIY 62 +++ +VW R DLR+ DN AL A V+ VFI PE+ Q+ ++ Sbjct: 2 SSSGGGCSIVWFRRDLRVEDNPALAAGVRAG--AVVGVFIWAPEEEGQYYPGRVSRWWLK 59 Query: 63 ASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKL 122 SL + SL G + + DS+ L T++F+N Y+ + RD Sbjct: 60 NSLAHLDSSLRNLGTPLVTKRST---DSVSSLLEVVKSTGATQIFFNHLYDPLSLVRDHR 116 Query: 123 LEKRL-QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPA 181 ++ L + +SF+ +L P + + Q + + F + + LP P Sbjct: 117 AKEILTAQGITVRSFNSDLLYEPWDVNDENGQPFTTFDSFWERCLSMPYDPQAPPLP-PK 175 Query: 182 IRLTGPVT--PSNIPRFFDYPFQAIDPM----FPIGEQNALHILRKFCKEKVYYYVEQRD 235 + G V+ PS+ F D +A + + + G NA L F + Y + R Sbjct: 176 RIIPGDVSKCPSDTLVFEDDLEKASNALLARAWSPGWSNANKALTTFINGPLIEYSKNRR 235 Query: 236 IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFS----WLNELIWREFY 291 TS LSP+L G +S ++ + ++ + V + +L + RE+ Sbjct: 236 KADSATTSFLSPHLHFGEVSVKKVLHLVRIKQVFWANEGNEAGEESVNLFLKSIGLREYS 295 Query: 292 RHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHN 351 R++ +P +P + + W + +AW+QG TG+P++DA MR+L GW+H+ Sbjct: 296 RYISFNHP-YSHERPPLGHLKFFPWVVNEGYFKAWRQGRTGYPLVDAGMRELWATGWLHD 354 Query: 352 RLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNP 411 R+R++ +SF VK L + WR G +YF LLD DL S+ GWQ+ + T D + RI NP Sbjct: 355 RIRVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTLPDGREFDRIDNP 414 Query: 412 TIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKN------DLSLNYPLPIVDHKK 465 +G + DP G ++R WLPEL +PT++IH P + + +L NYPLPIV+ Sbjct: 415 QFEGYKCDPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPLPIVEIDA 474 Query: 466 AC---HHTLNQYYAAKKQS 481 A L Q + + S Sbjct: 475 ATVRLEEALIQMWQLEAAS 493 >gi|15559008|gb|AAL02092.1|AF348461_1 cryptochrome 1b [Solanum lycopersicum] gi|15559010|gb|AAL02093.1|AF348462_1 Cryptochrome 1b [Solanum lycopersicum] Length = 583 Score = 368 bits (945), Expect = 1e-99, Method: Composition-based stats. Identities = 138/496 (27%), Positives = 224/496 (45%), Gaps = 25/496 (5%) Query: 5 TAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYAS 64 ++ +VW R DLR+ DN AL AA VIAVFI PE+ + +I S Sbjct: 2 SSGGCSIVWFRRDLRLEDNPALAAAVRAG--SVIAVFIWAPEEEGYYCPGRVSRWWIKKS 59 Query: 65 LLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLE 124 L + SL + G + + DS+ L T++F+N Y+ + RD + Sbjct: 60 LAHLDSSLKKLGTSLITKRSN---DSVSSLLQVVKSTGATRVFFNHLYDPISLVRDNCAK 116 Query: 125 KRL-QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIR 183 + L V SF+ +L P +++ + + ++ F + + + LP I Sbjct: 117 ETLSAEGVSVCSFNADLLYEPWEVVDDESRPFSTFSDFWEKCLTMPYDPEAPLLPPKRII 176 Query: 184 LTGPVTPSNIPRFFDYPFQA-----IDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPA 238 + F+ + + + G NA L F + Y + R Sbjct: 177 SGDASRCPSDNLVFESELEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRSKAD 236 Query: 239 IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFS----WLNELIWREFYRHL 294 TS LSP L G +S R+ ++R++ + + +L + REF R++ Sbjct: 237 SATTSFLSPCLHFGEVSVRKVFHRIRTKQTLWANEGNKAGEESVNLFLKSIGLREFSRYM 296 Query: 295 MAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLR 354 ++P +P + + W D +AW+QG TG+P++DA MR+L GW+H+R+R Sbjct: 297 SFYHP-YSHERPLLGQLKYFPWLVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIR 355 Query: 355 MITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQ 414 ++ +SF VK L + W G +YF LLD DL S+ GWQ+ T D + I NP + Sbjct: 356 VVVSSFSVKVLQLPWTWGMKYFWDTLLDADLESDALGWQFITGTLPDGCEFLGIDNPQFE 415 Query: 415 GKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKN------DLSLNYPLPIVDHKKACH 468 G +FDP G ++R WLPEL +PT++IH P + +L NYP PIV+ A Sbjct: 416 GYKFDPNGEYVRRWLPELARLPTEWIHHPWDAPESVLQAAGIELGSNYPFPIVEIVAAKE 475 Query: 469 H---TLNQYYAAKKQS 481 L+Q + + + Sbjct: 476 RLEEALSQMWQLEAAA 491 >gi|331694491|ref|YP_004330730.1| Deoxyribodipyrimidine photo-lyase [Pseudonocardia dioxanivorans CB1190] gi|326949180|gb|AEA22877.1| Deoxyribodipyrimidine photo-lyase [Pseudonocardia dioxanivorans CB1190] Length = 462 Score = 368 bits (945), Expect = 1e-99, Method: Composition-based stats. Identities = 148/474 (31%), Positives = 215/474 (45%), Gaps = 25/474 (5%) Query: 10 HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69 +VW R DLR+ D AA + A +A+F+ P + F+Y L + Sbjct: 5 SVVWFRRDLRVRDQPIFLAAADSGPAA-LALFVLDPALLD--PSGPARRTFLYGCLRALD 61 Query: 70 KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ- 128 +L + +V + D + + + + RRD+ +E+ L Sbjct: 62 DALGGRLLVVR-------GDPADVVPRVAAAVGAGTVHVAADFGPYGTRRDQAVEEALAV 114 Query: 129 HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188 + PG + ++V+TPFR+ + + + + Sbjct: 115 DGRELVRTGSPYAVAPGRVTKDDGDPFRVFTPFRRTWSRQRRRGPADTSAATVRWIDPSD 174 Query: 189 TPSNIPRFFDYPFQAIDPMFP-IGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSP 247 S + +D P GE A + F + V Y E R+ P ++GTS++S Sbjct: 175 EGSGPRAVRIPDDEPLDAALPDPGEDAAHRQWKAFLSDAVDRYGEDRNRPDVEGTSRMSV 234 Query: 248 YLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPF 307 YL G + PR + DL A ++ EL WREFY ++ P + Sbjct: 235 YLKWGCIHPRTMLH-------DLSRHRSGSAETYRTELAWREFYADVLFRRPDSARHN-Y 286 Query: 308 IPWTEKIE---WNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364 + + + L AW++G TGFPI+DA MRQL WMHNRLRMI ASFLVKD Sbjct: 287 DRAFDALPSASGKRADELFAAWREGRTGFPIVDAGMRQLRAQAWMHNRLRMIVASFLVKD 346 Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424 L + W G +FM L+DGDLASN GWQW A +G D PYFRIFNP QG+RFDP G + Sbjct: 347 LHLPWWWGARHFMQLLVDGDLASNQHGWQWTAGSGTDPAPYFRIFNPVTQGERFDPDGDY 406 Query: 425 IRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478 +R ++PEL +VP + +H P D + YP PIVDH+ L +Y K Sbjct: 407 VRRFVPELADVPGRAVHQPWKLPD--GVPDGYPQPIVDHRAERDEALARYERVK 458 >gi|33860843|ref|NP_892404.1| putative DNA photolyase [Prochlorococcus marinus subsp. pastoris str. CCMP1986] gi|33633785|emb|CAE18744.1| putative DNA photolyase [Prochlorococcus marinus subsp. pastoris str. CCMP1986] Length = 478 Score = 368 bits (945), Expect = 1e-99, Method: Composition-based stats. Identities = 168/486 (34%), Positives = 238/486 (48%), Gaps = 33/486 (6%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 L W R DLRI DN+AL A SDA + + +I S+ ++ F+ SL ++ Sbjct: 7 LFWHRKDLRIFDNQALIKAFSLSDA-ITSTYIFDKNYSHDFNASS-RAWFLGNSLQELGN 64 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130 + + G + D + + + +F+NR E E+ RD ++ L+ + Sbjct: 65 NWKKMGSRLVLEEG----DPVLIIPQLAKKIDAKFVFWNRSIEPYEINRDLEIKNNLKEQ 120 Query: 131 VI-CKSFDDSVLLPPGSILNHALQMYKVYTPFR---------------KALIQNLVQADL 174 I D +L+ P I + Y VY PF ++ D Sbjct: 121 NIQVIETWDHLLIEPLKIFSGNNNPYSVYGPFYKNLKSKINLLGSFEQDKVVFQFKDIDN 180 Query: 175 RSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEK-VYYYVEQ 233 + AI + V + +P I P P GE A +L F EK +Y Y Sbjct: 181 KFKENKAINSSDSVL-EKFIKNIKFPGSNICPCRP-GENAAQTLLENFINEKKIYSYNSA 238 Query: 234 RDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPK-SGAFSWLNELIWREFYR 292 RD P+ GTS LS L G +S R+ WN D + +W EL+WREFY+ Sbjct: 239 RDFPSHNGTSFLSASLRFGTISIRKVWNATLNLNSDFANQENYLSIETWQKELVWREFYQ 298 Query: 293 HLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNR 352 H + +P + G P+ + W ++ L Q W G TG PI+DAAMRQLN+ GWMHNR Sbjct: 299 HCLFHFPELEKG-PYRKKWDHFPWQNNNELFQHWSNGETGVPIVDAAMRQLNSTGWMHNR 357 Query: 353 LRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPT 412 RMI ASFLVKDL+ W++GE+ FM L+DGDLA+NNGGWQW+AS+G D P RIFNP Sbjct: 358 CRMIVASFLVKDLICSWQMGEKKFMETLVDGDLAANNGGWQWSASSGMDPKP-LRIFNPY 416 Query: 413 IQGKRFDPQGTFIRHWLPELNNVPT-QYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTL 471 Q K+FDP +I++W+PEL+ V + ++ S L+KN NY PIV+H Sbjct: 417 TQAKKFDPICEYIKYWIPELSRVSNSELLNGEISNLEKN----NYSSPIVNHNIQQRLFK 472 Query: 472 NQYYAA 477 + Y Sbjct: 473 SLYAEI 478 >gi|77166866|gb|ABA62409.1| cryptochrome 2 [Danaus plexippus] Length = 742 Score = 368 bits (944), Expect = 1e-99, Method: Composition-based stats. Identities = 128/494 (25%), Positives = 194/494 (39%), Gaps = 32/494 (6%) Query: 10 HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69 + W R LR+ DN AL ++ VFI P + + F+ L + Sbjct: 31 TVHWFRKGLRLHDNPALREGLVDA-TTFRCVFIIDPWFASSSNVGINKWRFLLQCLEDLD 89 Query: 70 KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH 129 K+L + + + L + T L + E RD + + + Sbjct: 90 KNLRKLNSRLFVVRG----QPADALPKLFREWGTTALTFEEDPEPYGRVRDHNIMTKCRE 145 Query: 130 RVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188 I S L I+ + +ALI ++ + L V Sbjct: 146 VGIQVTSRVSHTLYKLDDIIEKNGGKAPLTYHQFQALIASMPPPPSAEPTISLETLNRAV 205 Query: 189 TPSNIP--------RFFDYPFQAID---PMFPIGEQNALHILRKFCKEKVYYYVEQRDIP 237 TP + + F P++ GE AL L + + K + R Sbjct: 206 TPISDNHDERFGVPTLEELGFDTEGLKPPIWIGGENEALLRLERHLERKAWVASFGRPKM 265 Query: 238 AIQGT----SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRH 293 + + LSPYL G LS R + +L E + IK + S +++WREF+ Sbjct: 266 TPESLLSSQTGLSPYLRFGCLSTRLFYYQLSELYK--RIKQERPPLSLHGQILWREFFYC 323 Query: 294 LMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRL 353 P+ + P +I W K+ L+ W G TGFP IDA M QL GW+H+ Sbjct: 324 AATRNPNFDRMEG-NPICVQIPWEKNQEALKKWANGQTGFPWIDAIMIQLRNDGWIHHLA 382 Query: 354 RMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPT 412 R A FL + DL + W G + F LLD D + N G W W S + +F + P Sbjct: 383 RHAVACFLTRGDLWISWEEGMKVFDELLLDADWSVNAGMWMW-LSCSSFFQQFFHCYCPV 441 Query: 413 IQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLD------KNDLSLNYPLPIVDHKKA 466 G++ DP G FIR ++P L N+PT+YIH P + + + +YP+PIVDH KA Sbjct: 442 RFGRKTDPNGDFIRKYIPVLKNMPTRYIHEPWVCPEEIQKSIRCIIGKDYPMPIVDHTKA 501 Query: 467 CHHTLNQYYAAKKQ 480 L + Q Sbjct: 502 SEINLERIKQVYAQ 515 >gi|83953690|ref|ZP_00962411.1| deoxyribodipyrimidine photolyase [Sulfitobacter sp. NAS-14.1] gi|83841635|gb|EAP80804.1| deoxyribodipyrimidine photolyase [Sulfitobacter sp. NAS-14.1] Length = 473 Score = 368 bits (944), Expect = 1e-99, Method: Composition-based stats. Identities = 161/483 (33%), Positives = 233/483 (48%), Gaps = 27/483 (5%) Query: 5 TAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYAS 64 + S L+W R DLR++D+ AL AA N+ VI VFI + A + Sbjct: 2 SDKSPILLWYRRDLRLSDHPALSAAA-NAGRPVIPVFIKDKSV---DALGAAPKWRLGLG 57 Query: 65 LLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLE 124 + + SL + D++E L + + ++++R Y+ + V+RD ++ Sbjct: 58 IGALADSLEGVSSRLILREG----DALEVLQALIKETGAGTVYWSRLYDPDSVKRDSKIK 113 Query: 125 KRL-QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRS---LPVP 180 + L + KSF V+ P ++ A YKVYTPF + V+ L + LP P Sbjct: 114 ETLCNDGIEAKSFGGHVMFEPWTVETKAGDCYKVYTPFWNNVKTRDVEPPLSAPSDLPAP 173 Query: 181 -AIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAI 239 + + + ++ D + P +GE+ A L F V Y + RDIP Sbjct: 174 ESWPDSDALDGWDLGAAMDRGADVVRPFVCLGEKAAQSRLGAFMAHGVADYKQTRDIPGT 233 Query: 240 QGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYP 299 GTS LS LS+G +SP QCW+ + D K GA ++L EL+WREF HLM P Sbjct: 234 DGTSNLSENLSLGEISPHQCWHAAQRALHD----GKQGAETFLKELVWREFAYHLMHHTP 289 Query: 300 SVCMGKPFIPWTEKIEWNKDS--HLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMIT 357 + + + WN+D ++AWKQG TG P +DAAMR+L G MHNR RMI Sbjct: 290 RMLTDN-WREEWDAFPWNEDERRAEVKAWKQGRTGEPFVDAAMRELYVTGRMHNRGRMIV 348 Query: 358 ASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKR 417 AS+L K L+ WRIG+++F L+D D ASN GWQWAA +G D+ PYFR+FNP Q + Sbjct: 349 ASYLTKHLMCHWRIGQKWFEHCLIDWDPASNAMGWQWAAGSGPDASPYFRVFNPETQLDK 408 Query: 418 FDPQGTFIRHWLPELNNVPTQYIHA-----PHSWLDKNDLSLNYPLPIVDHKKACHHTLN 472 FD + W+ E P + A P SW D +YP I+ + L Sbjct: 409 FDKNRDYASRWIAEGRANPHKDALAFFDAIPRSWPLSAD--DDYPEKIIALDEGRERALE 466 Query: 473 QYY 475 Y Sbjct: 467 TYK 469 >gi|261876455|dbj|BAI47553.1| cryptochrome1 [Glycine max] gi|261876457|dbj|BAI47554.1| cryptochrome1 [Glycine max] Length = 681 Score = 368 bits (944), Expect = 1e-99, Method: Composition-based stats. Identities = 144/500 (28%), Positives = 231/500 (46%), Gaps = 28/500 (5%) Query: 5 TAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYAS 64 + +VW R DLR+ DN AL A VI+VFI PE+ Q+ ++ S Sbjct: 2 SGGGCSIVWFRRDLRVEDNPALAAGVRAG--AVISVFIWAPEEEGQYYPGRVSRWWLKQS 59 Query: 65 LLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLE 124 L + SL G + +N SI L T+LF+N Y+ + RD + Sbjct: 60 LAHLDSSLRNLGSPLITKRSTN---SISSLLEVVKSTGATQLFFNHLYDPLSLVRDHRAK 116 Query: 125 KRL-QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIR 183 + L + +SF+ +L P + + Q + ++ F + + LP I Sbjct: 117 EVLTAQGITVRSFNSDLLYEPWDVNDAHGQPFTTFSAFWERCLSMPYDPQAPLLPPKRII 176 Query: 184 LTG-PVTPSNIPRFFDYPFQAIDPM----FPIGEQNALHILRKFCKEKVYYYVEQRDIPA 238 P PS+ F D +A + + + G NA L F + Y + R Sbjct: 177 PGDVPRCPSDTLVFEDELEKASNALLARAWSPGWSNADKALTAFVNGALIEYSKNRRKAD 236 Query: 239 IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFS----WLNELIWREFYRHL 294 TS LSP+L G +S ++ ++ ++ + V + +L + RE+ R++ Sbjct: 237 SATTSFLSPHLHFGEVSVKKVFHLVRIKQVFWANEGNKAGEESVNLFLKSIGLREYSRYI 296 Query: 295 MAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLR 354 +P +P + + W + +AW+QG TG+P++DA MR+L GW+H+R+R Sbjct: 297 SFNHP-YSHERPLLAHLKFFPWVVNEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIR 355 Query: 355 MITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQ 414 ++ +SF VK L + WR G +YF LLD DL S+ GWQ+ + T D RI NP + Sbjct: 356 VVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTLPDGRELDRIDNPQFE 415 Query: 415 GKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKN------DLSLNYPLPIV--DHKKA 466 G + DP G ++R WLPEL +PT++IH P + + +L NYPLPIV D + Sbjct: 416 GYKCDPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPLPIVGIDAAEV 475 Query: 467 C-HHTLNQYY---AAKKQSL 482 L Q + AA + ++ Sbjct: 476 RLQEALIQMWQQEAASRAAM 495 >gi|111219604|ref|YP_710398.1| deoxyribodipyrimidine photo-lyase [Frankia alni ACN14a] gi|111147136|emb|CAJ58783.1| Deoxyribodipyrimidine photolyase (DNA photolyase) (Photoreactivating enzyme) [Frankia alni ACN14a] Length = 451 Score = 368 bits (944), Expect = 1e-99, Method: Composition-based stats. Identities = 153/476 (32%), Positives = 227/476 (47%), Gaps = 26/476 (5%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M+V + WLR DLR++D+ AL AA +D V+ +F+ R + F+Y L Sbjct: 1 MTVSVCWLRRDLRLSDSPALCAAVDGAD-DVLVLFVLDDALRR--PAGPVRLAFLYRCLR 57 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 ++ L + C D ++ + ++ + Y RRD +E+ Sbjct: 58 ELDDRLGGRL-------CVRRGDPVDVVPEVARAVDARRVHISADYGPYGRRRDGEVEQA 110 Query: 127 LQHRV-ICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185 L+ + PG + ++V+TPF +A ++ + R + P Sbjct: 111 LRAGGRELVRTGSPYAVAPGRLATAGGTPFRVFTPFYRAWKEHGWR---RPVAEPVGARW 167 Query: 186 GPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245 + IP D + GE+ A L +F + Y E+RD+P TS+L Sbjct: 168 ALLASDGIPADPDLGGTRLPA---AGERAARERLAEFLAGSLTGYAERRDVPGQDTTSRL 224 Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305 SPYL G + PR L A + +EL WREFY ++A P+ Sbjct: 225 SPYLKYGCIHPRTVLAELDRA------TSPRDAEKFRSELAWREFYAEVLAANPASARA- 277 Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365 + ++ +AWK G TGFPI+DA MRQL GW+ NR+RMI ASF+ KDL Sbjct: 278 DLTGALADMAYDPPEGGFEAWKWGRTGFPIVDAGMRQLLAEGWVPNRVRMIEASFVCKDL 337 Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425 V W G +F+ L+DGDLASN+ GWQW A TG D+ PYFR+FNP QG R+DP GT++ Sbjct: 338 HVHWTHGARWFLDHLVDGDLASNHHGWQWTAGTGTDAAPYFRVFNPVSQGHRYDPDGTYV 397 Query: 426 RHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481 R W+P+L +VP +H P W YP P+VDH +L +Y AA+++ Sbjct: 398 RRWIPQLRDVPAAKVHEP--WTLPGGPPAGYPAPVVDHATERRESLARYEAARRRG 451 >gi|157827751|ref|YP_001496815.1| deoxyribodipyrimidine photo-lyase [Rickettsia bellii OSU 85-389] gi|157803055|gb|ABV79778.1| Deoxyribodipyrimidine photo-lyase [Rickettsia bellii OSU 85-389] Length = 475 Score = 368 bits (944), Expect = 2e-99, Method: Composition-based stats. Identities = 156/485 (32%), Positives = 239/485 (49%), Gaps = 32/485 (6%) Query: 8 SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQH-GISARQSHFIYASLL 66 +VWLR +LR+ DNK+ AA NSD K++ +FI + R+ F+ +L Sbjct: 3 KTSIVWLRRNLRLHDNKSFAAALRNSD-KILPIFIFDTTILERFKNPHDRRLSFLANTLC 61 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 + L + + ++ + ++ ++ + YE N + RDK +++ Sbjct: 62 LINDELKKLKGKLLV----FYGKPLDIIPKLAATLKIKNIYADEDYEPNNIERDKKVQEL 117 Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQA----DLRSLPVPAI 182 L + D +L+ P +L + YKVYTP+ +A + + + L + Sbjct: 118 LGSNCTLNLYCDHLLIKPDRVLTKDNKAYKVYTPYMQAFRKFIADNGSISHNKLLTNYSY 177 Query: 183 RLTGPVTPSNIPRFF--DYPFQAIDPMFPIGE----------QNALHILRKFCKEKVYYY 230 L G + D + + IG +NA ++L KF ++ Y Sbjct: 178 NLDGKLYTPQDIELKTIDLNIGKSEALKQIGYVYKEDELWQPKNAQNVLDKFITRRINRY 237 Query: 231 VEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREF 290 RD + GTS +SPYL G++S R+C+ + G+ +W+NELIWREF Sbjct: 238 KIDRDFLYLDGTSTISPYLRFGLVSIRECYRKAFNA------ASNPGSITWINELIWREF 291 Query: 291 YRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMH 350 Y ++ +P+ + + KI WN + TG+PIIDAA++QL GWMH Sbjct: 292 YATILYHFPNTVNEEFLEKYKNKIPWNNKKEYFDKFINAETGYPIIDAAVKQLVGDGWMH 351 Query: 351 NRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFN 410 NR RMI ASF K+LL+DWR GEE+F L+D +LASN GGWQWA+S G D+ PYFRIFN Sbjct: 352 NRARMIVASFFSKNLLLDWRKGEEFFAQYLMDYELASNVGGWQWASSCGTDAQPYFRIFN 411 Query: 411 PTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHT 470 P QGK FDP +I+ +LP L NV IH ++ + + NYP PIVD+ + Sbjct: 412 PYTQGKNFDPDAEYIKKYLPILKNVQPHIIHN----INSHKMYDNYPKPIVDYGLSRAKA 467 Query: 471 LNQYY 475 + + Sbjct: 468 IEVFK 472 >gi|169595114|ref|XP_001790981.1| hypothetical protein SNOG_00291 [Phaeosphaeria nodorum SN15] gi|160701021|gb|EAT91786.2| hypothetical protein SNOG_00291 [Phaeosphaeria nodorum SN15] Length = 534 Score = 367 bits (943), Expect = 2e-99, Method: Composition-based stats. Identities = 145/488 (29%), Positives = 225/488 (46%), Gaps = 35/488 (7%) Query: 12 VWLR-NDLRITDNKALYAA---CHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67 W DLRI DN AL+ A + ++ V++ HG S + F+ L Sbjct: 50 HWFHPKDLRIQDNTALHHASELAQSKKKPLVGVYVNCAADESWHGTSPARVDFMCEGLKI 109 Query: 68 VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127 +QK L I + +C + + + + Q+V+ +F N +YEI+E+RRD L K++ Sbjct: 110 MQKELKDLNIPLVFLECEDRKKIVPTVIEWLKGQKVSHVFGNYEYEIDELRRDIKLVKQV 169 Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187 + D ++ PG++L A + KV+TP+ K + L + PA Sbjct: 170 GGGIQVSLHHDQTVIEPGTMLTGAGKPMKVFTPYHKQWLAILKEQPELLDTSPAPAANPS 229 Query: 188 VTPSNIPRFFDYPF---------------QAIDPMFPIGEQNALHILRKFCKEKVYYYVE 232 + FD P + I ++P G A + F K + Y Sbjct: 230 SMKKELKDLFDTPAPKPAADKQFSSDEEKKRIRKLWPAGHAAASKRMDAFLKT-IDSYAA 288 Query: 233 QRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVD----LLIKPKSGAFSWLNELIWR 288 R PA TS+LS Y S G+ S R ++ + + G + W+ E+++R Sbjct: 289 TRSNPAKDSTSRLSAYFSAGMFSVRSALQKVADYNHGSTDFTESSARPGVYGWVREIVFR 348 Query: 289 EFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGW 348 E YR P M P + ++W D + W +G TG P IDA MRQLN + Sbjct: 349 ELYRQTTLTTPHTSMNMPQNLKFDFVQWEDDEEGWEKWYKGETGEPFIDAGMRQLNHEAY 408 Query: 349 MHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRI 408 MHNRLRM +S+L +LL+D+R GE YF L+D DL++N GW+ P + + Sbjct: 409 MHNRLRMNVSSYLYCNLLLDYRRGERYFAETLIDWDLSNNTQGWE----------PSYTV 458 Query: 409 FNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLS-LNYPLPIVDHKKAC 467 FNP Q +R DP G +IR W+PEL +V + + AP++ L K + L YP P VD K+ Sbjct: 459 FNPVSQAERNDPDGDYIRKWVPELKDVQGKAVFAPYARLSKAEFEKLGYPKPHVDWKQTK 518 Query: 468 HHTLNQYY 475 + ++ Sbjct: 519 QRCMERFK 526 >gi|99081282|ref|YP_613436.1| deoxyribodipyrimidine photo-lyase type I [Ruegeria sp. TM1040] gi|99037562|gb|ABF64174.1| Deoxyribodipyrimidine photo-lyase type I [Ruegeria sp. TM1040] Length = 474 Score = 367 bits (943), Expect = 2e-99, Method: Composition-based stats. Identities = 157/488 (32%), Positives = 233/488 (47%), Gaps = 34/488 (6%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 + W+R DLR+ DN AL AA + +I ++I ++ + A + L + Sbjct: 6 PVIWWIRRDLRLRDNPALRAA-QEAGGPIIPLYIHD---AQEEALGAAPKFRLGLGLERF 61 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128 K+L +KG + D++E L + + ++R Y+ +RD +++ L+ Sbjct: 62 AKTLEEKGSRLIVRRG----DALEVLREVIAESGAGHVIWSRLYDPAATKRDAKIKEALK 117 Query: 129 H-RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187 + KS +L P ++ MY+VYTPF KA+ D+ L RL P Sbjct: 118 ASDIKAKSTGGRLLFEPWTVDTKDGGMYRVYTPFWKAVRTR----DVAELTAAPSRLAAP 173 Query: 188 VTPSNIPRFFDYPFQA--------IDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAI 239 + + D A + +GE AL L F E+V Y RD PA Sbjct: 174 ESWPSGEALADLGMDAAMRRGGAIVAQHCRVGEDAALAQLDDFLTERVSNYKAHRDFPAR 233 Query: 240 QGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYP 299 TS+LS L+ G +SP + W+ + D + GA +L E++WREF HLM P Sbjct: 234 AATSELSENLAWGEISPHRMWHLGAQAMQD----GQPGAEHFLKEVVWREFAYHLMHRSP 289 Query: 300 SVCMGKPFIPWTEKIEWNKDS-HLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITA 358 + + + + W D LQ W+QG TG+ +DAAMR+L G MHNR RMI A Sbjct: 290 RILT-RNWREEWDGFPWQDDPGDALQRWQQGQTGYDFVDAAMRELYVTGKMHNRARMIVA 348 Query: 359 SFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRF 418 SFL K L++ W+ G ++F L+D D ASN GWQW A +G D+ P+FRIFNP Q ++F Sbjct: 349 SFLTKHLMIHWKYGLQWFEDCLVDWDPASNAMGWQWVAGSGPDAAPFFRIFNPDGQLEKF 408 Query: 419 DPQGTFIRHWLPELNNVPTQYIHA-----PHSWLDKNDLSLNYPLPIVDHKKACHHTLNQ 473 DP+G + R WLPE P + A P W D S PI+ K+ L+ Sbjct: 409 DPKGDYARRWLPEGQANPPETAMAYFEAIPRRWSLHPDQSR--VSPIIGLKEGRERALSA 466 Query: 474 YYAAKKQS 481 Y ++ QS Sbjct: 467 YKESRNQS 474 >gi|730324|sp|P40115|CRY1_SINAL RecName: Full=Cryptochrome-1; AltName: Full=Blue light photoreceptor gi|414196|emb|CAA50898.1| photolyase [Sinapis alba] Length = 501 Score = 367 bits (943), Expect = 2e-99, Method: Composition-based stats. Identities = 138/500 (27%), Positives = 226/500 (45%), Gaps = 30/500 (6%) Query: 7 MSVH---LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYA 63 MS + +VW R DLRI DN AL AA H V VFI PE+ Q ++ Sbjct: 1 MSTNKKTIVWFRRDLRIEDNPALAAAAHEG--SVFPVFIWCPEEEGQFYPGRASRWWMKQ 58 Query: 64 SLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLL 123 SL +++SL G + + ++ + TK+ +N Y+ + RD + Sbjct: 59 SLAHLRQSLKALGSELTLIKTHS---TVSAILDCVRATGATKVVFNHLYDPVSLVRDHTV 115 Query: 124 EKRLQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAI 182 +++L R I +S++ + + PG + V K + V++ + P + Sbjct: 116 KEKLVERGISVQSYNGDLCMSPGRYTVKRANLLLVLILTGKKCLDMSVESVVLPPPWRLM 175 Query: 183 RLTGPVTPSNIPRFFDYPFQA---------IDPMFPIGEQNALHILRKFCKEKVYYYVEQ 233 L+ T + + + + G NA IL +F ++++ Y + Sbjct: 176 PLSAAET-VWACSVEELGLENEAEKPSNALLTRAWSPGWSNADKILNEFIEKQLIDYAKN 234 Query: 234 RDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEF----VDLLIKPKSGAFSWLNELIWRE 289 TS LSPYL G +S R+ + + + D + + A +L + R+ Sbjct: 235 SKKVVGNSTSLLSPYLHFGEISVRRVFQCARMKQIIWARDKNGEGEESADLFLRGIGLRD 294 Query: 290 FYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWM 349 + R + +P + + W+ D +AW+QG TG+P++DA MR+L GWM Sbjct: 295 YSRIICFNFP-FTHEQSLLSHLRFFPWDADVDKFKAWRQGRTGYPLVDAGMRELWATGWM 353 Query: 350 HNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIF 409 HNR+R+I +SF VK LL+ W+ G +YF LLD DL + GWQ+ + + D R+ Sbjct: 354 HNRIRVIVSSFAVKFLLLPWKWGMKYFWDTLLDADLECDIIGWQYISGSLPDGHELDRLD 413 Query: 410 NPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSW------LDKNDLSLNYPLPIVDH 463 NP IQG ++DP+G +IR WLPEL +PT++IH P +L NY PIV Sbjct: 414 NPAIQGAKYDPEGEYIRQWLPELARLPTEWIHHPWDAPLTVLKASGVELGTNYAKPIVVI 473 Query: 464 KKACHHTLNQYYAAKKQSLL 483 A ++ ++ Sbjct: 474 DTARELLTKAISRTREAQIM 493 >gi|254412957|ref|ZP_05026729.1| cryptochrome, DASH family [Microcoleus chthonoplastes PCC 7420] gi|196180121|gb|EDX75113.1| cryptochrome, DASH family [Microcoleus chthonoplastes PCC 7420] Length = 488 Score = 367 bits (943), Expect = 2e-99, Method: Composition-based stats. Identities = 135/488 (27%), Positives = 237/488 (48%), Gaps = 31/488 (6%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQ-----HGISARQSHFIYASL 65 L+W RNDLR+ D++ L+ A A+VI + + A ++ F+ S+ Sbjct: 7 LLWYRNDLRLHDHEPLHQALQT-KAQVIPCYCFDDRLFHTTSFGFPKTGAFRAKFLLESV 65 Query: 66 LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125 +++++ +G + + + + + +T ++++++ EV + L+ Sbjct: 66 ADLRENVRSRGSNLLVRRGLPEN----VIPTLAKELDITTVYFHQEVTSEEVAVESALKN 121 Query: 126 RLQH-RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL 184 L + ++F S L P + + L++ +++T FRK + + P L Sbjct: 122 ALSEIGITVQTFWGSTLYHPDDLPFNLLKIPELFTNFRKQVEKKSTIYPPFPTPKRLPSL 181 Query: 185 TGPVTPSNIPRFFDYPFQAIDPM------FPIGEQNALHILRKFC--KEKVYYYVEQRD- 235 V +P+ D+ ++ F GE L L + K+ + Y + R+ Sbjct: 182 P-SVEVGELPQLADFGLESPIFDERAVLPFQGGETAGLARLNDYFWKKDCLKVYKQTRNG 240 Query: 236 IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLM 295 + +S+ SP+L++G LSPR + ++++ + + + + ELIWR+F+R + Sbjct: 241 MLGSDYSSKFSPWLALGCLSPRFIYEQVQQYEQEQI--KNDSTYWLVFELIWRDFFRFIC 298 Query: 296 AFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRM 355 A + + +P I W +D W+QG TGFP+IDA MR+L G+M NR R Sbjct: 299 AKHGNRIF-RPSGLQGIPIPWKEDWDRFTLWQQGKTGFPLIDANMRELAATGFMSNRGRQ 357 Query: 356 ITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQG 415 ASFL K+L ++W+IG E+F S L+D D+ SN G W + A GND+ FR FN Q Sbjct: 358 NVASFLTKNLGINWQIGAEWFESLLIDYDVCSNWGNWNYTAGVGNDARG-FRYFNIQKQS 416 Query: 416 KRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND------LSLNYPLPIVDHKKACHH 469 K +DPQG +++HWLPELN++P +H P + L ++YP P+VD ++ Sbjct: 417 KDYDPQGYYVKHWLPELNSLPAAKVHQPWTLTSAEQKQFGVRLGVDYPNPVVDLMESVKA 476 Query: 470 TLNQYYAA 477 Y AA Sbjct: 477 NEKVYNAA 484 >gi|121601607|ref|YP_993682.1| deoxyribodipyrimidine photolyase [Burkholderia mallei SAVP1] gi|126448880|ref|YP_001081232.1| deoxyribodipyrimidine photolyase [Burkholderia mallei NCTC 10247] gi|238562973|ref|ZP_00439583.2| deoxyribodipyrimidine photolyase [Burkholderia mallei GB8 horse 4] gi|254178225|ref|ZP_04884880.1| deoxyribodipyrimidine photolyase [Burkholderia mallei ATCC 10399] gi|254199318|ref|ZP_04905684.1| deoxyribodipyrimidine photolyase [Burkholderia mallei FMH] gi|254205631|ref|ZP_04911983.1| deoxyribodipyrimidine photolyase [Burkholderia mallei JHU] gi|121230417|gb|ABM52935.1| deoxyribodipyrimidine photolyase [Burkholderia mallei SAVP1] gi|126241750|gb|ABO04843.1| deoxyribodipyrimidine photolyase [Burkholderia mallei NCTC 10247] gi|147748914|gb|EDK55988.1| deoxyribodipyrimidine photolyase [Burkholderia mallei FMH] gi|147753074|gb|EDK60139.1| deoxyribodipyrimidine photolyase [Burkholderia mallei JHU] gi|160699264|gb|EDP89234.1| deoxyribodipyrimidine photolyase [Burkholderia mallei ATCC 10399] gi|238521576|gb|EEP85026.1| deoxyribodipyrimidine photolyase [Burkholderia mallei GB8 horse 4] Length = 486 Score = 367 bits (943), Expect = 2e-99, Method: Composition-based stats. Identities = 152/494 (30%), Positives = 239/494 (48%), Gaps = 24/494 (4%) Query: 1 MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHF 60 M ++ +++ +VW +DLR++D+ AL A S VI V++ + A + Sbjct: 1 MSSSISIAPAVVWFCDDLRVSDHPALMRAAE-SGRPVIGVYVFDERAGGRPLGGAARWW- 58 Query: 61 IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120 ++ SL ++L D + + S+ ++++R+Y + D Sbjct: 59 LHGSL----RALGAALAALGGTLALLRGDEHDTIVSFAAALGAGAVYWSRRYALAARAVD 114 Query: 121 KLLEKRLQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPV 179 ++ L + I ++F+ S+L PG ++N + Y+V++ + +A ++ V A P Sbjct: 115 NAVQTALDAQGIAVETFNASLLFEPGDLVNADGRPYQVFSAYWRAAMRRGVPAPPLGAPR 174 Query: 180 PAIRLTGPVTPSNIPRFFD-YPFQAIDPMFPIG--------EQNALHILRKFCKEKVYYY 230 P + D + P + G E A LR F ++ Y Sbjct: 175 RLNGGALPAALARQCVALDALGLEPTGPDWAGGLRDAWRFGEDAAHRRLRAFVDSRLGGY 234 Query: 231 VEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREF 290 +RD P I TS+LSPY+ G LS RQ W+ + + ++ +L+EL WREF Sbjct: 235 AAERDRPGIASTSRLSPYVRFGNLSARQLWHAAADAYAHGAAT-QADLDKFLSELGWREF 293 Query: 291 YRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMH 350 + +P + + + + W D L AW++G TG+P +DA MR+L GWMH Sbjct: 294 GWTQLHHFPDLPR-RNLRHTLDGMPWRDDPAALAAWRRGATGYPFVDAGMRELWATGWMH 352 Query: 351 NRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFN 410 NR+RM+ ASFLVK LL+DWR GE +F L+D D ASN WQW A G D+ PYFRIFN Sbjct: 353 NRVRMVCASFLVKHLLIDWRAGEAWFWDTLVDADAASNAANWQWVAGCGADAAPYFRIFN 412 Query: 411 PTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKN------DLSLNYPLPIVDHK 464 P QG++FDP G ++R W+PEL +P IH P + L YPLPIV + Sbjct: 413 PVAQGRKFDPDGAYVRRWVPELAGLPPATIHEPWAAPGAQLAAAGVRLGETYPLPIVAYD 472 Query: 465 KACHHTLNQYYAAK 478 A L+ + A + Sbjct: 473 AARRRALDAFGAIR 486 >gi|149022681|gb|EDL79575.1| cryptochrome 2 (photolyase-like), isoform CRA_a [Rattus norvegicus] gi|149022682|gb|EDL79576.1| cryptochrome 2 (photolyase-like), isoform CRA_a [Rattus norvegicus] gi|183985822|gb|AAI66416.1| Cryptochrome 2 (photolyase-like) [Rattus norvegicus] Length = 594 Score = 367 bits (942), Expect = 2e-99, Method: Composition-based stats. Identities = 130/503 (25%), Positives = 199/503 (39%), Gaps = 33/503 (6%) Query: 1 MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHF 60 M A A SVH W R LR+ DN AL AA + V V+I P + + F Sbjct: 16 MGADGASSVH--WFRKGLRLHDNPALLAAVRGARC-VRCVYILDPWFAASSSVGINRWRF 72 Query: 61 IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120 + SL + SL + + + + VT+L + E RD Sbjct: 73 LLQSLEDLDTSLRKLNSRLFVVRG----QPADVFPRLFKEWGVTRLTFEYDSEPFGKERD 128 Query: 121 KLLEKRLQH-RVICKSFDDSVLLPPGSILNHALQ-MYKVYTPFRKALIQNLVQADL---- 174 + K + V + + L I+ Q Y F+ + + + Sbjct: 129 AAIMKMAKEAGVEVVTENSHTLYDLDRIIELNGQKPPLTYKRFQALISRMELPKKPVGAV 188 Query: 175 ---RSLPVPAIRLTGPVTPSNIPRFFDYPF--QAIDPM-FPIGEQNALHILRKFCKEKVY 228 A +P + F + + P + GE AL L K + K + Sbjct: 189 SSQHMENCRAEIQENHDDTYGVPSLEELGFPTEGLGPAVWQGGETEALARLDKHLERKAW 248 Query: 229 YYVEQRDIPAIQGT----SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNE 284 +R + LSPYL G LS R + RL + + + + + S + Sbjct: 249 VANYERPRMNANSLLASPTGLSPYLRFGCLSCRLFYYRLWDLYRKVK-RNSTPPLSLFGQ 307 Query: 285 LIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLN 344 L+WREF+ P + P +I W+++ L W +G TGFP IDA M QL Sbjct: 308 LLWREFFYTAATNNPRFDRMEG-NPICIQIPWDRNPEALAKWAEGKTGFPWIDAIMTQLR 366 Query: 345 TIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSV 403 GW+H+ R A FL + DL V W G F LLD D + N G W W S Sbjct: 367 QEGWIHHLARHAVACFLTRGDLWVSWESGVRVFDELLLDADFSVNAGSWMW-LSCSAFFQ 425 Query: 404 PYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLD------KNDLSLNYP 457 +F + P G+R DP G +IR +LP+L P++YI+ P + + K + ++YP Sbjct: 426 QFFHCYCPVGFGRRTDPSGDYIRRYLPKLKGFPSRYIYEPWNAPESVQKAAKCIIGVDYP 485 Query: 458 LPIVDHKKACHHTLNQYYAAKKQ 480 PIV+H + + + +Q Sbjct: 486 RPIVNHAETSRLNIERMKQIYQQ 508 >gi|209524800|ref|ZP_03273346.1| cryptochrome, DASH family [Arthrospira maxima CS-328] gi|209494679|gb|EDZ94988.1| cryptochrome, DASH family [Arthrospira maxima CS-328] Length = 486 Score = 367 bits (942), Expect = 2e-99, Method: Composition-based stats. Identities = 124/487 (25%), Positives = 229/487 (47%), Gaps = 31/487 (6%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQ-----HGISARQSHFIYASL 65 ++W R+DLR+ D++ L A ++ A++I ++ P Q+ + + + F+ S+ Sbjct: 9 ILWYRHDLRLHDHEPLDLAT-STQAQIIPLYCFDPRQFAKTSFGFPKMGGFRGKFLLESV 67 Query: 66 LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125 ++ +L + G + + Q + ++Y+++ E+ ++ LEK Sbjct: 68 ADLRHNLQKIGSNLLVR----IGEPETVIFDLVKQLNIDAVYYHKEVTTEELAVERALEK 123 Query: 126 RL-QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL 184 L V KSF + L P + ++ +++T FRK + + + + P Sbjct: 124 ALTPLGVEVKSFWGATLYHPKELPFPIEKLPELFTNFRKQVEKKSIIYPPYTPPKQLPTF 183 Query: 185 TGPVTPSNIPRFFDYPFQAID------PMFPIGEQNALHILRKFCKEKV--YYYVEQRD- 235 + P IP + + F GE L L + ++ Y + R+ Sbjct: 184 PD-IEPGEIPTLAELGITKLPFDSRAVLDFVGGETAGLTRLNDYFWQRDCLKNYKQTRNG 242 Query: 236 IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLM 295 + +S+ SP+L+ G LSPR + ++ + + + + EL+WR+++R + Sbjct: 243 MLGSDYSSKFSPWLANGCLSPRWIYQQVCDYEQQRV--KNDSTYWLVFELLWRDYFRFIC 300 Query: 296 AFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRM 355 + K + KI W ++ Q+W G TGFP++DA MR+L G+M NR R Sbjct: 301 LKHGRKVFYKSGLQGV-KIPWGENWQQFQSWCDGLTGFPLVDANMRELAATGFMSNRGRQ 359 Query: 356 ITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQG 415 ASFL K+L ++W++G E+F S L+D D+ SN G W + A GND FR FN Q Sbjct: 360 NVASFLTKNLGINWQMGAEWFESLLIDYDVCSNWGNWNYTAGVGNDGRG-FRYFNIAKQS 418 Query: 416 KRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDL------SLNYPLPIVDHKKACHH 469 + +DP G +++HWLPEL ++P +H+P ++ + ++YP P+VD +++ Sbjct: 419 QDYDPMGDYVKHWLPELASIPHGKVHSPWRLSNQEQIRFGMRLGVDYPYPMVDLQRSVEA 478 Query: 470 TLNQYYA 476 Y Sbjct: 479 NRRIYEK 485 >gi|300704913|ref|YP_003746516.1| deoxyribodipyrimidine photolyase [Ralstonia solanacearum CFBP2957] gi|299072577|emb|CBJ43927.1| deoxyribodipyrimidine photolyase (photoreactivation), FAD-binding [Ralstonia solanacearum CFBP2957] Length = 522 Score = 367 bits (942), Expect = 2e-99, Method: Composition-based stats. Identities = 162/475 (34%), Positives = 233/475 (49%), Gaps = 31/475 (6%) Query: 10 HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGI----SARQSHFIYASL 65 LVW R DLR D+ AL+ A + +V F+ + R+ FI A++ Sbjct: 27 GLVWFRRDLRHIDHAALHYALRHC-REVFCAFVFDRGILDPLLARGLRADRRVEFIRAAV 85 Query: 66 LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125 ++ +L + G D + + S Q V +F N E + RD + Sbjct: 86 EALRSALREAGGELIVLH----DHAHHAIPSLAQQLGVEAVFANHDEEPAALARDAAVRD 141 Query: 126 RLQHR-VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL 184 L + F D V+ +LN + Y V+TP++ A + + DLR+ P+ Sbjct: 142 ALARQPCAWFDFKDQVIFERAEVLNGQGKPYGVFTPYKNAWLAAVSPFDLRAYPIEPHLH 201 Query: 185 TGPVTPSNI----PRFFDYPFQAID---PMFPIGEQNALHILRKFCKEKVYYYVEQRDIP 237 P + P F + P G A +L F ++ Y +RD P Sbjct: 202 ALARPPQGLAPATPSLEAMGFARSNLSVIALPTGMSGAEALLDDF-ATRMDDYHARRDYP 260 Query: 238 AIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAF 297 A++G S LS +L G +S R R ++ GA +WL+ELIWR+FY ++ Sbjct: 261 AVRGPSYLSTHLRFGTVSIRTLAARAH----SAMLHGSRGAATWLSELIWRDFYFMILHH 316 Query: 298 YPSVCMGKPFIPWTEKIEW---NKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLR 354 P + G F P ++I W AW+ TG+P++DAAM Q+ G+MHNRLR Sbjct: 317 RPDLAEGTSFRPEFDRIRWVGGETGDVRFAAWRDARTGYPLVDAAMLQIRQSGYMHNRLR 376 Query: 355 MITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQ 414 M+TASFL+KDL VDWR GE +F L D D A+NNGGWQWAAS+G D+ P+FRIFNP Q Sbjct: 377 MVTASFLIKDLGVDWRRGEHHFADALNDFDFAANNGGWQWAASSGCDAQPWFRIFNPVTQ 436 Query: 415 GKRFDPQGTFIRHWLPELNNVPTQYIHAPHSW------LDKNDLSLNYPLPIVDH 463 ++FDPQG FIR +LP+L +P +Y+HAP + L YP PIV+H Sbjct: 437 SEKFDPQGHFIRKYLPQLAKLPDRYLHAPWTAPADVLKAAGVALGATYPRPIVEH 491 >gi|85702996|ref|ZP_01034100.1| deoxyribodipyrimidine photolyase [Roseovarius sp. 217] gi|85671924|gb|EAQ26781.1| deoxyribodipyrimidine photolyase [Roseovarius sp. 217] Length = 473 Score = 367 bits (942), Expect = 2e-99, Method: Composition-based stats. Identities = 151/484 (31%), Positives = 221/484 (45%), Gaps = 27/484 (5%) Query: 5 TAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYAS 64 T LVW R DLR+ D+ AL AA +I VFI G+ A + S Sbjct: 2 TVKPPILVWFRRDLRLADHPALCAAIE-GGGPIIPVFIHDDSVA---GLGAAPKWRLGLS 57 Query: 65 LLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLE 124 L + + L +G + S ++E L + + + ++R Y+ + RDK ++ Sbjct: 58 LASLARDLEDRGSRLILRRGS----ALEVLRALVAETGAGAVHWSRLYDPQAIERDKAVK 113 Query: 125 KRLQHRVIC-KSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIR 183 L+ +S V+ P ++ Y+VY+P +A+ V LR+ Sbjct: 114 SALREDGAAAQSHAGHVMFEPWTVETKTGGFYRVYSPMWRAVKDREVAVPLRAPSTILAP 173 Query: 184 LTGPVTP----SNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAI 239 PV+ ++ + P +GE A+ L F + Y + R+ PA+ Sbjct: 174 DMWPVSDGLDDWHMGAAMVRGAEVCLPYQRVGEAAAMDRLHAFTDGAISDYKDARNFPAV 233 Query: 240 QGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYP 299 + TS LS L+ G +SPRQCW+ + L GA WL EL+WREF HLM P Sbjct: 234 EATSSLSENLTYGEVSPRQCWHAGQR----ALHAGAQGAEHWLKELVWREFAYHLMYHTP 289 Query: 300 SVCMGKPFIPWTEKIEWNKDSHLLQA--WKQGYTGFPIIDAAMRQLNTIGWMHNRLRMIT 357 + W + W+ D+ WKQG TG P +DAAMR++ G MHNR RMI Sbjct: 290 HILTDNWRTDW-DAFPWSTDADHPDVIAWKQGRTGEPFVDAAMREMYVTGKMHNRARMIV 348 Query: 358 ASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKR 417 AS+L K L+ W++G ++F L D D ASN GWQWAA G D+ PYFR+FNP Q ++ Sbjct: 349 ASYLTKHLMTHWKVGLDWFADCLTDWDPASNAMGWQWAAGCGPDAAPYFRVFNPETQLEK 408 Query: 418 FDPQGTFIRHWLPELNNVPTQYIHA-----PHSWLDKNDLSLNYPLPIVDHKKACHHTLN 472 FD G + R W+ E P P W + + +YP +VD + L Sbjct: 409 FDRDGAYTRRWIAEGQGQPQATALDYFKAIPRRWSLSS--TSSYPNRLVDLAGGRNRALA 466 Query: 473 QYYA 476 Y A Sbjct: 467 AYEA 470 >gi|312372433|gb|EFR20390.1| hypothetical protein AND_20159 [Anopheles darlingi] Length = 1043 Score = 367 bits (942), Expect = 3e-99, Method: Composition-based stats. Identities = 121/494 (24%), Positives = 193/494 (39%), Gaps = 32/494 (6%) Query: 10 HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69 + W R LR+ DN AL + VF+ P + + F+ L + Sbjct: 108 TVHWFRKGLRLHDNPALREGVRGA-TSFRCVFVIDPWFAGSSNVGINKWRFLLQCLDDLD 166 Query: 70 KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH 129 ++L + + + L + T L + E RD + + + Sbjct: 167 RNLRKLNSRLFVIRG----QPADALPKLFKEWSTTCLTFEEDPEPFGRVRDHNISEMCKE 222 Query: 130 -RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188 + S L I+ + +A+I ++ + + G Sbjct: 223 LGIEVISAASHTLYNLERIIEKNGGRAPLTYHQFQAIIASMDAPPQPETTITLEAIGGAT 282 Query: 189 TPS--------NIPRFFDYPFQAID---PMFPIGEQNALHILRKFCKEKVYYYVEQRDIP 237 TP +P + F+ P++ GE AL L + + K + R Sbjct: 283 TPLYDDHDDKYGVPTLEELGFETEALRPPVWIGGETEALARLERHLERKAWVASFGRPKM 342 Query: 238 AIQGT----SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRH 293 Q + LSPYL G LS R + +L + + IK S +L+WREF+ Sbjct: 343 TPQSLLASQTGLSPYLRFGCLSTRLFYYQLTDLYKK--IKKACPPLSLHGQLLWREFFYC 400 Query: 294 LMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRL 353 P+ P +I W+++S L W G TGFP IDA M QL GW+H+ Sbjct: 401 AATKNPTFDKM-AGNPICVQIPWDRNSEALAKWASGQTGFPWIDAIMTQLREEGWIHHLA 459 Query: 354 RMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPT 412 R A FL + DL + W G + F LLD D + N G W W S + +F + P Sbjct: 460 RHAVACFLTRGDLWISWEEGMKVFEELLLDADWSVNAGMWMW-LSCSSFFQQFFHCYCPV 518 Query: 413 IQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLD------KNDLSLNYPLPIVDHKKA 466 G++ DP G +IR +LP L N PT++IH P + + K + +YPLP+V+H A Sbjct: 519 KFGRKADPNGDYIRRYLPVLKNFPTRFIHEPWNAPENVQRAAKCLIGKDYPLPMVNHAIA 578 Query: 467 CHHTLNQYYAAKKQ 480 + + + Sbjct: 579 SRANMERIKQVYQH 592 >gi|133754342|gb|ABO38435.1| cryptochrome 2 [Antheraea pernyi] Length = 788 Score = 367 bits (941), Expect = 3e-99, Method: Composition-based stats. Identities = 131/494 (26%), Positives = 196/494 (39%), Gaps = 32/494 (6%) Query: 10 HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69 + W R LR+ DN AL N+ VFI P + + F+ L + Sbjct: 36 TVHWFRKGLRLHDNPALREGLVNA-TTFRCVFIIDPWFASSSNVGINKWRFLLQCLEDLD 94 Query: 70 KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH 129 SL + + + L + T L + E RD + + + Sbjct: 95 SSLKKLNSRLFVVRG----QPADALPKLFREWGTTALTFEEDPEPYGRVRDHNITTKCRE 150 Query: 130 RVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188 I S L I+ + +ALI ++ P+ L G Sbjct: 151 VGINVISRVSHTLYKLDKIIERNGGKAPLTYHQFQALIASMPPPQPAEAPISIETLNGAK 210 Query: 189 TPSNI--------PRFFDYPFQAID---PMFPIGEQNALHILRKFCKEKVYYYVEQRDIP 237 TP ++ P + F+ D PM+ GE AL L + + K + R Sbjct: 211 TPVSVDHDDRFGVPTLEELGFETEDLKPPMWMGGESEALARLDRHLERKAWVASFGRPKM 270 Query: 238 AIQGT----SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRH 293 Q + LSPYL G LS R + +L E + IK S +++WREF+ Sbjct: 271 TPQSLLASQTGLSPYLRFGCLSTRLFYYQLTELYKK--IKRVRPPLSLHGQILWREFFYC 328 Query: 294 LMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRL 353 P+ + P +I W K+ L W G TG+P IDA M QL GW+H+ Sbjct: 329 AATRNPNFDRMEG-NPICVQIPWEKNQEALSKWANGQTGYPWIDAIMIQLREEGWIHHLA 387 Query: 354 RMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPT 412 R A FL + DL + W G + F +LD D + N G W W S + +F + P Sbjct: 388 RHAVACFLTRGDLWISWEEGMKVFDELMLDADWSVNAGMWMW-LSCSSFFQQFFHCYCPV 446 Query: 413 IQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLD------KNDLSLNYPLPIVDHKKA 466 G++ DP G FIR ++P L N+PT+YIH P + + + +YPLP++DH KA Sbjct: 447 RFGRKTDPNGDFIRKYIPALKNMPTRYIHEPWVAPESVQQAAQCVVGCDYPLPMLDHTKA 506 Query: 467 CHHTLNQYYAAKKQ 480 L + Q Sbjct: 507 SQINLERIKQVYAQ 520 >gi|218245570|ref|YP_002370941.1| cryptochrome, DASH family [Cyanothece sp. PCC 8801] gi|218166048|gb|ACK64785.1| cryptochrome, DASH family [Cyanothece sp. PCC 8801] Length = 488 Score = 367 bits (941), Expect = 3e-99, Method: Composition-based stats. Identities = 135/499 (27%), Positives = 234/499 (46%), Gaps = 35/499 (7%) Query: 1 MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQ-----HGISA 55 M AT L+W RNDLR+ D++ ++ A A++I + Q++ Sbjct: 3 MTATK----ILIWYRNDLRLHDHQPMFQAVKQ-KAQIIPFYCFDNRQFKTTSFGFPKTGN 57 Query: 56 RQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEIN 115 +S F+ S+ ++K+L Q G + + + C + + ++++++ Sbjct: 58 FKSQFLLQSIDNLRKNLQQLGSNLVVRRG----YPEKIIPEICKELAIDAVYFHQEVTSE 113 Query: 116 EVRRDKLLEKRL-QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADL 174 E++ + LEK L Q V F + L P + ++ +++T FRK + + + Sbjct: 114 EIKVETALEKALTQMGVQLNPFWGTTLYHPDDLPFTLAEIPELFTNFRKQVEKKSLINST 173 Query: 175 RSLPVPAIRLTGPVTPSNIPRFFDYPFQAID------PMFPIGEQNALHILRKFC--KEK 226 P L + NIP + + + F GE + L ++ K + Sbjct: 174 FPTPKKLPSLPN-LDLGNIPTLAELGLETPEFDSRGVLEFIGGESEGIKRLNQYFWQKNR 232 Query: 227 VYYYVEQRD-IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNEL 285 + Y E R+ + +S+ SP+L++G LSPR + + + ++ + + + EL Sbjct: 233 LKDYKETRNEMLGSDYSSKFSPWLALGCLSPRYIYEEVTKYELERV--KNDSTYWLIFEL 290 Query: 286 IWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNT 345 +WR+++R + A + + + + W +D Q W+ G TG+P++DA MR+L Sbjct: 291 LWRDYFRFICAKHGNKVFYSSGLQGL-NLPWKEDWQRFQLWQTGNTGYPLVDANMRELAA 349 Query: 346 IGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPY 405 G+M NR R ASFL K+L ++W +G E+F S L+D D+ SN G W + A GND+ Sbjct: 350 TGFMSNRGRQNVASFLTKNLGINWLMGAEWFESVLIDYDVCSNYGNWNYTAGVGNDARG- 408 Query: 406 FRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND------LSLNYPLP 459 FR FN Q K +DP+G ++RHWLPEL +P IH P L ++YP P Sbjct: 409 FRYFNIPKQSKDYDPKGNYLRHWLPELKTIPGDKIHEPWKLSQAEQKQYRVNLGVDYPRP 468 Query: 460 IVDHKKACHHTLNQYYAAK 478 IVD K+ Y A+ Sbjct: 469 IVDFFKSIKANEAIYNNAQ 487 >gi|33333729|gb|AAQ11980.1| cryptochrome 1 [Rattus norvegicus] Length = 588 Score = 367 bits (941), Expect = 3e-99, Method: Composition-based stats. Identities = 126/501 (25%), Positives = 202/501 (40%), Gaps = 38/501 (7%) Query: 7 MSVH-LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASL 65 M V+ + W R LR+ DN AL +D + V+I P + + F+ L Sbjct: 1 MGVNAVHWFRKGLRLHDNPALKECIQGADT-IRWVYILDPWFAGSSNVGINRWRFLLQCL 59 Query: 66 LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125 + +L + + + + +TKL E RD ++K Sbjct: 60 EDLDANLRKLNSRLFVIRG----QPADVFPRLFKEWNITKLSIEYDSEPFGKERDAAIKK 115 Query: 126 RLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLV-QADLRSLPVPAI-- 182 + S L L+ +++ P Q LV + + +P I Sbjct: 116 LATEAGVEVIVRISHTLY---DLDKIIELNGGQPPLTYKRFQTLVSKMEPLEMPADTITS 172 Query: 183 ----RLTGPVTPSNIPR-----FFDYPFQA---IDPMFPIGEQNALHILRKFCKEKVYYY 230 + T P++ + + + F ++P GE AL L + + K + Sbjct: 173 DVIGKCTTPLSDDHDEKYGVPSLEELGFDTDGLSSAVWPGGETEALTRLERHLERKAWVA 232 Query: 231 VEQRDIPAIQGT----SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELI 286 +R + LSPYL G LS R + +L + + + K S S +L+ Sbjct: 233 NFERPRMNANSLLASPTGLSPYLRFGCLSCRLFYFKLTDLYKKVK-KNSSPPLSLYGQLL 291 Query: 287 WREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTI 346 WREF+ P + P +I W+K+ L W +G TGFP IDA M QL Sbjct: 292 WREFFYTAATNNPRFDKMEG-NPICVQIPWDKNPEALAKWAEGRTGFPWIDAIMTQLRQE 350 Query: 347 GWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPY 405 GW+H+ R A FL + DL + W G + F LLD D + N G W W S + + Sbjct: 351 GWIHHLARHAVACFLTRGDLWISWEEGMKVFEELLLDADWSINAGSWMW-LSCSSFFQQF 409 Query: 406 FRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLD------KNDLSLNYPLP 459 F + P G+R DP G +IR +LP L P +YI+ P + + K + +NYP P Sbjct: 410 FHCYCPVGFGRRTDPNGDYIRRYLPVLRGFPAKYIYDPWNAPEGIQKVAKCLIGVNYPKP 469 Query: 460 IVDHKKACHHTLNQYYAAKKQ 480 +V+H +A + + +Q Sbjct: 470 MVNHAEASRLNIERMKQIYQQ 490 >gi|162146574|ref|YP_001601033.1| deoxyribodipyrimidine photo-lyase [Gluconacetobacter diazotrophicus PAl 5] gi|161785149|emb|CAP54694.1| putative deoxyribodipyrimidine photo-lyase [Gluconacetobacter diazotrophicus PAl 5] Length = 463 Score = 367 bits (941), Expect = 3e-99, Method: Composition-based stats. Identities = 150/469 (31%), Positives = 225/469 (47%), Gaps = 35/469 (7%) Query: 6 AMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASL 65 A + +VW R D RI DN AL A + + I H A +++ ++ Sbjct: 5 APAPTIVWFREDFRIADNMALLEA-EKRGQPTLCIVILDD----AHLPGAAARWWLHGAI 59 Query: 66 LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125 + ++L G + + L + +F+NR+Y+ D ++ Sbjct: 60 RSLDETLRGMGGALHVFRGAAR----AVLAEIVRKTGAGAVFWNRRYDPAGREADTAIKA 115 Query: 126 RLQHRV-ICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADL---------- 174 L+ R +SF ++L P S+ ++ YK++T F +A Sbjct: 116 DLRARGLTVRSFPGALLHEPWSVCTRSVAPYKIFTAFWRAACALPAPFPPHPAPERLVFA 175 Query: 175 RSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQR 234 P+P +T +PR D+ + M+ GE+ A L F + Y R Sbjct: 176 PPPPMPDSLITRHEQDGLLPRHPDW-AGGLRDMWSPGEEEAGDQLSDFLRHDGAGYATAR 234 Query: 235 DIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHL 294 D P + TS+LSP+L G +SP Q W+ K+ +L EL WR+F L Sbjct: 235 DFPGDEATSRLSPFLRFGHVSPAQVWHAATR---------KACPDKFLMELGWRDFAWSL 285 Query: 295 MAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLR 354 + F P + + P + + W D L AW++G TG+P++DA MR+L GWMHNR+R Sbjct: 286 LFFNPDLAT-RNLRPEFDAMPWRHDPGGLAAWQRGQTGYPLVDAGMRELWHTGWMHNRVR 344 Query: 355 MITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQ 414 M+ ASFLVK LL+DWR GE +F L+D D ASN WQW A TG D+ PYFR+ NP +Q Sbjct: 345 MVAASFLVKHLLIDWREGERWFADTLVDHDPASNPMNWQWNAGTGVDAAPYFRVMNPILQ 404 Query: 415 GKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDH 463 ++FDP G +IR W+PEL ++ IHAP ++ + YP PIVDH Sbjct: 405 SRKFDPHGVYIRRWVPELAHLSDDAIHAPW----ESGATHPYPAPIVDH 449 >gi|88855888|ref|ZP_01130550.1| DNA photolyase [marine actinobacterium PHSC20C1] gi|88814755|gb|EAR24615.1| DNA photolyase [marine actinobacterium PHSC20C1] Length = 476 Score = 366 bits (940), Expect = 4e-99, Method: Composition-based stats. Identities = 149/484 (30%), Positives = 232/484 (47%), Gaps = 47/484 (9%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 +VWLRNDLR++DN AL AA D ++ V+I + + +++ SL + Sbjct: 8 PSIVWLRNDLRLSDNPALTAATSE-DRPLVVVYIHDETGDGIRPLGSASKWWLHHSLTAL 66 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128 +L + G + + L + + T + +NR+Y D L+ L+ Sbjct: 67 DAALQKLGGQLTLSHGP----ATQVLPALVDELGATSVHWNRRYT-AARDIDAGLKASLR 121 Query: 129 HRV-ICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187 + +S ++L P I N + YKV+TP+ +A + V+ LR+ +R Sbjct: 122 EQGLTVESHQGNLLNEPWHIRNGQGEPYKVFTPYWRAAQERPVRDALRAPTTTTLRWLAG 181 Query: 188 VTPSNIPRFFDY------PFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQG 241 S+ ++ + + + GEQ A + L F E++ Y +RD PA+ Sbjct: 182 SPASDDIAEWNLLPTRPDWAEGLRETWTPGEQGARNRLESFVTERLADYH-RRDEPAVDA 240 Query: 242 TSQLSPYLSIGVLSPRQCWNRLKEE-FVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPS 300 TS LSP+L G +SP Q W RL+ D+ ++ +L+E+ WREF L+ P Sbjct: 241 TSGLSPHLRFGEISPTQIWQRLRGTGSTDVPNPARNNVAKFLSEIGWREFSTALLFDNPR 300 Query: 301 VCMGKPFIPWTEKIEWNKDSHLL------------QAWKQGYTGFPIIDAAMRQLNTIGW 348 + + P W + +AW++G TG P++DA MR+L G Sbjct: 301 LATD-SYRPAYNAFPWGYTVDQIGGVDEPAGVSEVEAWRRGRTGIPLVDAGMRELWHTGT 359 Query: 349 MHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRI 408 MHNR+RM+ ASFL+K+LL+DWR GE++F L+D D ASN WQW A +G D+ PYFR+ Sbjct: 360 MHNRVRMVVASFLIKNLLIDWRAGEQWFWDTLVDADEASNPANWQWVAGSGADAAPYFRV 419 Query: 409 FNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACH 468 FNP +Q K+FDP G ++ W+PEL + NYP PIVD + Sbjct: 420 FNPILQQKKFDPAGEYVARWIPELG-------------------TKNYPEPIVDLAETRR 460 Query: 469 HTLN 472 L Sbjct: 461 EALE 464 >gi|259019315|gb|ACV89993.1| CRY1 [Fragaria vesca] Length = 673 Score = 366 bits (940), Expect = 4e-99, Method: Composition-based stats. Identities = 136/500 (27%), Positives = 229/500 (45%), Gaps = 27/500 (5%) Query: 1 MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHF 60 M + +VW R DLR+ DN AL A V+A+FI PE+ + + Sbjct: 1 MSGGSG--CSVVWFRRDLRVEDNPALLAGVRAGG--VVALFIWAPEEEGPYYPGRVSRWW 56 Query: 61 IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120 + SL + SL G + + DS+ L CL T+LF+N Y+ + RD Sbjct: 57 LKHSLAHLDSSLRSLGTPLITKKST---DSVSSLLEVCLATGATQLFFNHLYDPISLVRD 113 Query: 121 KLLEKRLQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPV 179 ++ L I +SF+ +L P + + + + + F + + + LP Sbjct: 114 HRAKEVLSANGITVRSFNADLLYEPWDVNDVHGRPFTTFDAFWERCLSMPFDPEAPLLPP 173 Query: 180 PAIRL-TGPVTPSNIPRFFDYPFQAIDPM----FPIGEQNALHILRKFCKEKVYYYVEQR 234 I P + F D + + + + G +A + F + Y R Sbjct: 174 KRIISGDASRCPPDTLVFEDESEKGSNALLARAWSPGWSSADKAVTTFINGPLIEYSTNR 233 Query: 235 DIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFS----WLNELIWREF 290 TS LSP+L G +S R+ ++ ++ + + + +L + RE+ Sbjct: 234 RKADSNTTSLLSPHLHFGEVSVRKVFHLIRIKQLLWANEGNKAGEESVNLFLKSIGLREY 293 Query: 291 YRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMH 350 R++ +P +P + + W + + +AW+QG TG+P++DA MR+L GW+H Sbjct: 294 SRYISFNHP-YSHERPLLGHLKFFPWVINQNYFKAWRQGRTGYPLVDAGMRELWATGWLH 352 Query: 351 NRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFN 410 +R+R++ +SF VK L + WR G +YF LLD DL S+ GWQ+ + T D + RI N Sbjct: 353 DRIRVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGREFDRIDN 412 Query: 411 PTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKN------DLSLNYPLPIVDHK 464 P +G + DP G ++R WLPEL+ +PT +IH P + + +L NYPLPIV + Sbjct: 413 PQFEGYKCDPHGEYVRRWLPELSRLPTDWIHHPWNAPESVLQAAGIELGSNYPLPIVGIE 472 Query: 465 KAC---HHTLNQYYAAKKQS 481 A L + + ++ + Sbjct: 473 AAKSRLQEALTEMWQHERAA 492 >gi|260433957|ref|ZP_05787928.1| deoxyribodipyrimidine photo-lyase [Silicibacter lacuscaerulensis ITI-1157] gi|260417785|gb|EEX11044.1| deoxyribodipyrimidine photo-lyase [Silicibacter lacuscaerulensis ITI-1157] Length = 474 Score = 366 bits (940), Expect = 5e-99, Method: Composition-based stats. Identities = 154/493 (31%), Positives = 233/493 (47%), Gaps = 36/493 (7%) Query: 4 TTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYA 63 + S L+W R DLR++D+ AL AA S VI VFI + A + Sbjct: 2 DSKQSPILIWFRQDLRLSDHPALSAAVR-SGRPVIPVFIRDSLV---DDLGAAPKWRLSL 57 Query: 64 SLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLL 123 L + ++L KG +++ L + + +++++R Y+ + + RD + Sbjct: 58 GLAALAQNLEHKGSKLVLRSGP----ALDALKALIDETGAREVYWSRAYDPDAIARDTHI 113 Query: 124 EKRLQH-RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAI 182 + L + KSF +L P ++ + ++V+TP +A+ Q V + + Sbjct: 114 KSVLTELGLTAKSFPGHLLFEPWTVATKTGKPFRVFTPMWRAVAQRDVPSPDPAPE---- 169 Query: 183 RLTGPVTPSNIPRFFDYPFQA--------IDPMFPIGEQNALHILRKFCKEKVYYYVEQR 234 RL P D+ + GE A L F E++ Y QR Sbjct: 170 RLAAPPLWPASEHLDDWGLGHAMRRGAGIVGQHVQAGETAAEARLDAFM-ERLDAYPAQR 228 Query: 235 DIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHL 294 D A GTS LS YL++G + PR W+R+K + GA ++L +L+WREF HL Sbjct: 229 DALADDGTSHLSEYLALGEIGPRTVWHRVK----GAALIGSIGADAFLRQLVWREFAYHL 284 Query: 295 MAFYPSVCMGKPFIPWTEKIEWNKDSHLL--QAWKQGYTGFPIIDAAMRQLNTIGWMHNR 352 M P + + P + WN+D +AW TG P++DA +R++ G MHNR Sbjct: 285 MYHTPHLLTQN-WRPEWDGFPWNEDIETPEVRAWMTARTGIPVVDAGLREMYVTGRMHNR 343 Query: 353 LRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPT 412 RMI AS+L K L+ W+IG ++F L+D D ASN GWQW A +G D+ P+FRIFNP Sbjct: 344 ARMIVASYLTKHLMTHWKIGMDWFADCLVDWDAASNAMGWQWVAGSGPDASPFFRIFNPQ 403 Query: 413 IQGKRFDPQGTFIRHWLPELNNVPTQ----YIHA-PHSWLDKNDLSLNYPLPIVDHKKAC 467 Q ++FDP G ++R W+ E + P + Y A P SW D + YP P+VD K Sbjct: 404 TQAEKFDPTGAYVRRWVAEGQSDPPKTALSYFEAIPRSWNLSPDDA--YPQPVVDLKVGR 461 Query: 468 HHTLNQYYAAKKQ 480 L Y K Q Sbjct: 462 ERALAAYEGRKNQ 474 >gi|148238598|ref|YP_001223985.1| deoxyribodipyrimidine photolyase [Synechococcus sp. WH 7803] gi|147847137|emb|CAK22688.1| Deoxyribodipyrimidine photolyase [Synechococcus sp. WH 7803] Length = 492 Score = 366 bits (939), Expect = 5e-99, Method: Composition-based stats. Identities = 158/500 (31%), Positives = 217/500 (43%), Gaps = 37/500 (7%) Query: 6 AMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISAR----QSHFI 61 S L W R DLR+ DN L+AA A V V++ P + F+ Sbjct: 2 TASRTLFWHRRDLRLADNTGLHAAAALGPA-VTGVYVLDPAIIAPPPELPPMAPARLWFL 60 Query: 62 YASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDK 121 SL+++Q+ G D ++ L + ++R E RD+ Sbjct: 61 VESLVELQQRWRDAGSRLLV----VAGDPVQRLPQLASLLEAAAVVWSRDVEPYARERDR 116 Query: 122 LLEKRLQHRVICKSF-DDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVP 180 + + LQ D +L+ P + Y+VY PF + + ++ ++ P Sbjct: 117 QVARALQASGRKVLVDWDQLLVAPELLKTGGGDPYRVYGPFLRNWRGQVELSEPGTVEAP 176 Query: 181 AI--------------------RLTGPVTPSNIPRFFDYPFQAIDPMFP-IGEQNALHIL 219 RL + F+ +D GE A L Sbjct: 177 TGLIDLDAACLDALQTAAGELGRLCAEGQRDLEQLRSGHGFKGMDLCPCRPGEAAAAGQL 236 Query: 220 RKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEF-VDLLIKPKSGA 278 F + Y R+ P GTS LS LS+G +SPRQ W + + + + Sbjct: 237 AVFADGPLLGYEPDRNFPGTAGTSGLSAALSVGTVSPRQAWCAAQAAKDLARSDEQRQAI 296 Query: 279 FSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDA 338 W EL WREFY+ + +P + G P+ + W + WK G TG PIIDA Sbjct: 297 AVWEQELCWREFYQQALFHFPELADG-PYREQWRRFPWENNEDWFDFWKDGQTGMPIIDA 355 Query: 339 AMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAAST 398 AMRQLN GWMHNR RMI ASFLVKDL+ DWR GE FM +DGDLA+NNGGWQW+AS+ Sbjct: 356 AMRQLNETGWMHNRCRMIVASFLVKDLICDWRWGERAFMELEVDGDLAANNGGWQWSASS 415 Query: 399 GNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPL 458 G D P RIFNP Q +FD G +IR W+PEL +V T+ + S YP Sbjct: 416 GMDPKP-LRIFNPATQASKFDADGDYIRRWVPELRHVCTKDL---LSGDIGALERRGYPE 471 Query: 459 PIVDHKKACHHTLNQYYAAK 478 P+V+HK Y K Sbjct: 472 PLVNHKIQQARFKALYATIK 491 >gi|190573805|ref|YP_001971650.1| putative DNA photolyase [Stenotrophomonas maltophilia K279a] gi|190011727|emb|CAQ45346.1| putative DNA photolyase [Stenotrophomonas maltophilia K279a] Length = 473 Score = 366 bits (939), Expect = 5e-99, Method: Composition-based stats. Identities = 152/464 (32%), Positives = 227/464 (48%), Gaps = 15/464 (3%) Query: 6 AMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASL 65 +SV LVW R DLR+ DN AL AA ++ V+ V+I P + + A + + SL Sbjct: 2 PVSVALVWFRRDLRLQDNPALQAAL-DAGHDVVPVYIHAPHEEGEWAPGAASDAWRHRSL 60 Query: 66 LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125 + L +G DS+ L Q +++NR+YE RD +++ Sbjct: 61 AALDADLRTRGSSLVLRSG----DSLPALQLLIAQTGAEAVYWNRKYEPATQPRDATIKR 116 Query: 126 RLQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVP-AIR 183 L+ + I +S + S+L P I Q YKV+TP+ + ++ + L++ P A Sbjct: 117 MLREQGIDAQSCNGSLLFEPWDIATQQGQPYKVFTPYWRNVLSHWRLPALQAAPEALAPH 176 Query: 184 LTGPVTPSNIPRFFDYPFQ-AIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGT 242 + ++ + + GE AL L F + Y EQRD+P GT Sbjct: 177 AVDSLALDDLQLAPTLDWDTGFWEHWQPGEAGALEALSVFEDGALRGYREQRDLPDRVGT 236 Query: 243 SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVC 302 S+LSP+L G ++P + + L+ G +L +L WR+F HL+ +P Sbjct: 237 SRLSPHLHFGEIAPWRIAHALEGLRSAGTDADIDG---YLRQLGWRDFAYHLLHHFPKTP 293 Query: 303 MGKPFIPWTEKIEWNKDSHL-LQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFL 361 P ++ W S L AW++G TG PI+DA +R+L G+MHNR+RMI AS+L Sbjct: 294 TDN-LNPRFDRFPWATPSEAQLHAWQRGNTGVPIVDAGLRELWHTGYMHNRVRMIVASYL 352 Query: 362 VKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQ 421 K L W G +F L+D DLA+N GWQW A TG D+ PYFR+FNP Q ++FDPQ Sbjct: 353 CKHLRAHWLHGARWFWDTLVDADLANNTMGWQWVAGTGADAAPYFRVFNPVTQAEKFDPQ 412 Query: 422 GTFIRHWLPELNNVPTQYIHAPHSW-LDKNDLSLNY-PLPIVDH 463 +I W+PEL +P + AP L + Y P P+VD Sbjct: 413 ARYISRWVPELAALPVKARFAPWQHPLLLATHAPGYPPTPLVDL 456 >gi|37725007|gb|AAO23970.1| cryptochrome 1 [Pisum sativum] gi|45935254|gb|AAS79662.1| cryptochrome 1 apoprotein [Pisum sativum] gi|45935256|gb|AAS79663.1| cryptochrome 1 apoprotein [Pisum sativum] Length = 682 Score = 366 bits (939), Expect = 5e-99, Method: Composition-based stats. Identities = 142/497 (28%), Positives = 231/497 (46%), Gaps = 27/497 (5%) Query: 5 TAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYAS 64 ++ +VW R DLR+ DN AL A V+ VFI PE+ Q+ ++ S Sbjct: 2 SSGGCSIVWFRRDLRVEDNPALAAGVRAG--AVVGVFIWAPEEEGQYYPGRVSRWWLKNS 59 Query: 65 LLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLE 124 L Q+ SL G + + DSI L T++F+N Y+ + RD + Sbjct: 60 LSQLDSSLRNLGTPLVTKRST---DSISSLLEVVKSTGATQIFFNHLYDPLSLVRDHRAK 116 Query: 125 KRL-QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIR 183 + L + +S++ +L P + + Q + + F + + LP P Sbjct: 117 EILTAQGITVRSYNSDLLYEPWDVNDEHGQPFTTFDSFWERCLSMPYDPQAPLLP-PKRI 175 Query: 184 LTGPVT--PSNIPRFFDYPFQAIDPM----FPIGEQNALHILRKFCKEKVYYYVEQRDIP 237 + G V+ PS+ F D ++ + + + G NA L F + Y R Sbjct: 176 IPGDVSRCPSDTLVFEDELEKSSNALLARAWSPGWSNANKALTTFINGPLIEYSVNRRKA 235 Query: 238 AIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFS----WLNELIWREFYRH 293 TS LSP+L G +S ++ ++ ++ + V + +L + RE+ R+ Sbjct: 236 DSATTSFLSPHLHFGEVSVKKVFHLVRIKQVFWANEGNKAGEESVNLFLKSIGLREYSRY 295 Query: 294 LMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRL 353 + +P +P + + W D +AW+QG TG+P++DA MR+L GW+H+R+ Sbjct: 296 ISFNHP-YSHERPLLGHLKFFPWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRI 354 Query: 354 RMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTI 413 R++ +SF VK L + WR G +YF LLD DL S+ GWQ+ + T D + RI NP Sbjct: 355 RVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTLPDGREFDRIDNPQF 414 Query: 414 QGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKN------DLSLNYPLPIVDHKKAC 467 +G + DP G ++R WLPEL +PT++IH P + + +L NYPLPIV+ A Sbjct: 415 EGYKCDPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPLPIVEIDAAT 474 Query: 468 ---HHTLNQYYAAKKQS 481 L Q + + S Sbjct: 475 VRLEEALIQMWQLEAAS 491 >gi|194014306|ref|ZP_03052923.1| deoxyribodipyrimidine photo-lyase [Bacillus pumilus ATCC 7061] gi|194013332|gb|EDW22897.1| deoxyribodipyrimidine photo-lyase [Bacillus pumilus ATCC 7061] Length = 477 Score = 366 bits (939), Expect = 5e-99, Method: Composition-based stats. Identities = 165/488 (33%), Positives = 250/488 (51%), Gaps = 25/488 (5%) Query: 7 MSVHLVWLRNDLRITDNKALYAA---CHNSDAKVIAVFIATPEQWRQHGISARQSHFIYA 63 M + ++W R D+R+ D+ AL A + K++A++ P + + + HF + Sbjct: 1 MEIVVIWFRRDMRLDDHIALSKAITYAKKHEYKLLALYHLDP-FFTEMEMDINNEHF-FQ 58 Query: 64 SLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLL 123 +L K + + DD + + +F+N RRDK + Sbjct: 59 NLAHFVKEARESQVYVHLLH----DDVLRAFQQVMEVYDIKAVFFNEDEVGIGQRRDKQV 114 Query: 124 EKRLQHRVICKS-FDDSVLLPPGSILNHALQMYKVYTPFRKALI----QNLVQADLRSLP 178 L+ + I S + D+ L IL Y+V+TP+ ++ Q +++ D Sbjct: 115 TDFLEKKGIHVSTWQDTHLHGARDILKADGSHYQVFTPYYQSWRKQEKQPVIKVDKSFFS 174 Query: 179 VPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPA 238 P++ + + IG A++ L +F ++++ Y E+RDIP+ Sbjct: 175 SEHTICDEPLSQKGNDKLRELIKGCSRKFDQIGSDKAMNTLHQFIQKRLTRYHEKRDIPS 234 Query: 239 IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFY 298 + GTS+LS +L G +S R ++ + EE + G +++ EL WR+FY + A Y Sbjct: 235 VFGTSKLSRFLKTGTISIRTIFHAIYEEA----LYEDEGRETFIKELAWRDFYHMIYAHY 290 Query: 299 PSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITA 358 P K + ++WN+D L +AW +G TGFP++DA MRQLN GWMHNRLRM+TA Sbjct: 291 PE-MKEKEINSAFQGMKWNEDETLFEAWCKGETGFPLVDAGMRQLNEEGWMHNRLRMVTA 349 Query: 359 SFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRF 418 SFL KD L+DWR GE YF +L+D D ASN GG+QWAAS G D+VPYFRIFNPT Q KRF Sbjct: 350 SFLTKDYLIDWRKGESYFAKKLVDYDEASNIGGFQWAASVGTDAVPYFRIFNPTTQSKRF 409 Query: 419 DPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND------LSLNYPLPIVDHKKACHHTLN 472 DP G IR ++PEL V ++IH P L YPLP VDH++ ++ Sbjct: 410 DPSGELIRKYVPELERVDEKWIHEPSKMPIDEQLKSGCVLGDTYPLPAVDHQERRKKAIS 469 Query: 473 QYYAAKKQ 480 + AK+Q Sbjct: 470 LFEEAKQQ 477 >gi|94733627|emb|CAK05311.1| cryptochrome 1b [Danio rerio] Length = 606 Score = 366 bits (939), Expect = 5e-99, Method: Composition-based stats. Identities = 119/494 (24%), Positives = 201/494 (40%), Gaps = 31/494 (6%) Query: 10 HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69 + W R LR+ DN +L + +D + V+I P + + F+ L + Sbjct: 5 TVHWFRKGLRLHDNPSLRDSIKGAD-NLRCVYILDPWFAGSSNVGISRWRFLLQCLEDLD 63 Query: 70 KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL-Q 128 SL + + D + ++++L Y E RD + K + Sbjct: 64 ASLRKLNSRLFVIRGQPTD----VFPRLFKEWKISRLSYEYDSEPFGKDRDAAIRKLATE 119 Query: 129 HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188 V L I+ + + LI + ++ + + A + Sbjct: 120 AGVEVFVRISHTLYDLDKIIEFNGGQSPLTYKRFQTLISRMDPVEMPAETITAEIMGKCS 179 Query: 189 TPSN--------IPRFFDYPFQA---IDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIP 237 TP + +P + F+ ++P GE AL L + + K + +R Sbjct: 180 TPVSDDHDNKFGVPSLEELGFETEGLSTAVWPGGETEALTRLERHLERKAWVANFERPRM 239 Query: 238 AIQGT----SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRH 293 + LSPYL G LS R + +L + + + K + + S +L+WREF+ Sbjct: 240 NANSLLASPTGLSPYLRFGCLSCRLFYFKLTDLYRKVK-KNSTPSLSLYGQLLWREFFYT 298 Query: 294 LMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRL 353 P + F P +I W+++ L W +G TGFP IDA M QL GW+H+ Sbjct: 299 AATNNPHFDKME-FNPICVQIPWDRNPEALAKWAEGQTGFPWIDAIMTQLRQEGWIHHLA 357 Query: 354 RMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPT 412 R A FL + DL + W G + F LLD D + N G W W S + +F + P Sbjct: 358 RHAVACFLTRGDLWISWEEGMKVFEELLLDADWSVNAGSWMW-LSCSSFFQQFFHCYCPV 416 Query: 413 IQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLD------KNDLSLNYPLPIVDHKKA 466 G+R DP G +IR +LP L P ++I+ P + + K + ++YP P+V+H +A Sbjct: 417 GFGRRTDPNGDYIRRYLPILRGFPAKFIYDPWNAPESVQKVAKCIIGVHYPKPMVNHAEA 476 Query: 467 CHHTLNQYYAAKKQ 480 + + +Q Sbjct: 477 SRINIERMKQIYQQ 490 >gi|20800469|gb|AAB28725.2| flavin-type blue-light photoreceptor [Arabidopsis thaliana] Length = 556 Score = 365 bits (938), Expect = 6e-99, Method: Composition-based stats. Identities = 138/490 (28%), Positives = 226/490 (46%), Gaps = 25/490 (5%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 +VW R DLR+ DN AL AA VIA+F+ PE+ + ++ SL Q+ Sbjct: 15 IVWFRRDLRVEDNPALAAAVRAG--PVIALFVWAPEEEGHYHPGRVSRWWLKNSLAQLDS 72 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL-QH 129 SL G + + DS+ L +++F+N Y+ + RD + L Sbjct: 73 SLRSLGTCLITKRST---DSVASLLDVVKSTGASQIFFNHLYDPLSLVRDHRAKDVLTAQ 129 Query: 130 RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189 + +SF+ +L P + + + + ++ F + + + LP I Sbjct: 130 GIAVRSFNADLLYEPWEVTDELGRPFSMFAAFWERCLSMPYDPESPLLPPKKIISGDVSK 189 Query: 190 PSNIPRFFDYPFQA-----IDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244 P F+ + + + G N L F + Y + R TS Sbjct: 190 CVADPLVFEDDSEKGSNALLARAWSPGWSNGDKALTTFINGPLLEYSKNRRKADSATTSF 249 Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFS----WLNELIWREFYRHLMAFYPS 300 LSP+L G +S R+ ++ ++ + V + +L + RE+ R++ +P Sbjct: 250 LSPHLHFGEVSVRKVFHLVRIKQVAWANEGNEAGEESVNLFLKSIGLREYSRYISFNHP- 308 Query: 301 VCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASF 360 +P + + W D + +AW+QG TG+P++DA MR+L GW+H+R+R++ +SF Sbjct: 309 YSHERPLLGHLKFFPWAVDENYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSF 368 Query: 361 LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDP 420 VK L + WR G +YF LLD DL S+ GWQ+ T DS + RI NP +G +FDP Sbjct: 369 FVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYITGTLPDSREFDRIDNPQFEGYKFDP 428 Query: 421 QGTFIRHWLPELNNVPTQYIHAPHSWLDKN------DLSLNYPLPIVDHKKACHH---TL 471 G ++R WLPEL+ +PT +IH P + + +L NYPLPIV +A L Sbjct: 429 NGEYVRRWLPELSRLPTDWIHHPWNAPESVLQAAGIELGSNYPLPIVGLDEAKARLHEAL 488 Query: 472 NQYYAAKKQS 481 +Q + + S Sbjct: 489 SQMWQLEAAS 498 >gi|144897443|emb|CAM74307.1| Deoxyribodipyrimidine photo-lyase [Magnetospirillum gryphiswaldense MSR-1] Length = 457 Score = 365 bits (938), Expect = 6e-99, Method: Composition-based stats. Identities = 151/456 (33%), Positives = 225/456 (49%), Gaps = 32/456 (7%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 LVWLR DLR+TD+ AL A V+ F + R G ++R +++ SL + Sbjct: 7 LVWLRRDLRLTDHPALTHAAQ--QGPVVLAFCHDDQDGRALGGASR--WWLHHSLAALGD 62 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130 + + +++N + + + + L+ Sbjct: 63 T-----------VTLARGRCEAEIPRLAEACGARAVYWNASADPALSATEARVRQALK-- 109 Query: 131 VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTP 190 + ++F L G++ +A ++V+TPF + + P P + P P Sbjct: 110 IPTETFAGDELFSIGAVRTNAGTPFQVFTPFWRTALALPPPPQPLPRPAPLVLAPCPGLP 169 Query: 191 SNIPRFF---DYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSP 247 D+ ++ + ++ GE A L F V Y RD+PA GTS LSP Sbjct: 170 LAALELMPKLDW-WRGMAELWQPGEAGAAARLADFLDGPVETYQRDRDLPAKPGTSLLSP 228 Query: 248 YLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPF 307 +L+ G +SPRQ W+ + + P G ++L EL WREF RHL+A P + P Sbjct: 229 HLAFGEISPRQIWHAARA------LPPGDGIHTFLKELGWREFSRHLLARQPDLAT-IPL 281 Query: 308 IPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLV 367 P W D L+ W+ G TG+PIIDA +RQL GWMHNR+RMI ASFL+KDLL+ Sbjct: 282 RPEFRAFPWRDDPEALRKWQMGRTGYPIIDAGLRQLWQTGWMHNRVRMIVASFLIKDLLI 341 Query: 368 DWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRH 427 W+ GE +F L+D D A+N WQW A +G D+ P+FRIFNP QG++FDP GT++R Sbjct: 342 PWQAGEAWFWDTLVDADSANNAASWQWVAGSGADAAPFFRIFNPVTQGEKFDPDGTYVRT 401 Query: 428 WLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDH 463 W+PEL ++P ++H P K + YP P+VDH Sbjct: 402 WVPELAHLPKAFVHQPW----KMGRAPGYPPPMVDH 433 >gi|6594298|dbj|BAA88424.1| blue light photoreceptor [Adiantum capillus-veneris] gi|6594302|dbj|BAA88426.1| blue light photoreceptor [Adiantum capillus-veneris] Length = 487 Score = 365 bits (938), Expect = 7e-99, Method: Composition-based stats. Identities = 131/479 (27%), Positives = 225/479 (46%), Gaps = 26/479 (5%) Query: 8 SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67 S +VWLR DLR+ DN AL A +A V+ VF+ PE+ Q ++ SL Q Sbjct: 4 STTIVWLRRDLRLDDNPALKEASKIGNA-VVPVFVWVPEEEGQFQQGRMSRWWLKQSLKQ 62 Query: 68 VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK-R 126 + +SL G + S+ S++ L + + +++F+N Y+ + RD+ +++ Sbjct: 63 LAQSLDSLGSPLIIRRSSS---SLQALMDLVIHTQASQVFFNHLYDPISLVRDQRVKEGL 119 Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 LQ + ++F+ +L P + + + + + + F + + LP P L Sbjct: 120 LQTGIHVRTFNADLLYEPWQVNDPSGKAFTTFNEFWDKCLNMPEEPHAPLLP-PTRSLLA 178 Query: 187 PVTPSNIPRFFDYPFQA---------IDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIP 237 D + + + G NA L F + + Y + + Sbjct: 179 FAGHLPGCTVEDLELENNSEKDSNALLARSWTPGWINAEKALEAFVERHLLQYAANQHMV 238 Query: 238 AIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFS----WLNELIWREFYRH 293 TS LSP+L G LS R+ + ++ + V + K +L + R++ R+ Sbjct: 239 DGSTTSFLSPHLHFGELSVRKVFYNVRIKAVQWTKEGKPDGEQSVNLFLRSIGLRDYSRY 298 Query: 294 LMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRL 353 + +P + + W D L +AW+QG TG+P++DA MRQ+ GW+HNR+ Sbjct: 299 ICFNFP-FTHERLILQNRRPFPWRVDEGLFKAWRQGRTGYPLVDAGMRQIWATGWLHNRI 357 Query: 354 RMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTI 413 R+I +SF VK L + W G +YF LLD DL ++ GWQ+ + D R+ + I Sbjct: 358 RVIVSSFFVKVLQLPWTWGMKYFWDALLDADLENDILGWQYISGGLPDGHELERMDDLQI 417 Query: 414 QGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKN------DLSLNYPLPIVDHKKA 466 +G ++DP+G ++R WLPEL+ +PT++IH P + +L NYP P+V+ A Sbjct: 418 EGYKYDPRGEYVRKWLPELSRLPTEWIHHPWDAPPRALRAAGVELGSNYPRPLVEFAAA 476 >gi|147901075|ref|NP_001083936.1| cryptochrome 2 (photolyase-like) [Xenopus laevis] gi|50415857|gb|AAH77381.1| Cry2 protein [Xenopus laevis] Length = 570 Score = 365 bits (938), Expect = 7e-99, Method: Composition-based stats. Identities = 125/503 (24%), Positives = 202/503 (40%), Gaps = 32/503 (6%) Query: 1 MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHF 60 M+ ++S + W R LR+ DN AL AA +++ V V+I P + F Sbjct: 1 MEGKPSVS-SVHWFRKGLRLHDNPALLAALRGANS-VRCVYILDPWFAASSSGGVNRWRF 58 Query: 61 IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120 + SL + SL + + + + V++L + E RD Sbjct: 59 LLQSLEDLDSSLRKLNSRLFVVRG----QPADVFPKLFKEWGVSRLTFEYDSEPFGKERD 114 Query: 121 KLLEKRLQH-RVICKSFDDSVLLPPGSILNHALQ-MYKVYTPFRKALIQNLVQADLRSL- 177 ++ K + V + L ++ Y F+ + + + L Sbjct: 115 AVIMKLAKEAGVEVIVENSHTLYDSDRVIELNGHSPPLTYKRFQAIISRMELPRRLAPSV 174 Query: 178 ------PVPAIRLTGPVTPSNIPRFFDYPFQAID---PMFPIGEQNALHILRKFCKEKVY 228 A +P + F + + ++P GE AL L + + K + Sbjct: 175 TRQQMEACRAEIKRNHDETYGVPSLEELGFHSENKGPAIWPGGETEALARLDRHLERKAW 234 Query: 229 YYVEQRDIPAIQGT----SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNE 284 +R + + LSPYL G LS R + RL+E + + K S + Sbjct: 235 VANYERPRMSANSLLASPTGLSPYLRFGCLSCRLFYYRLQELYQKVK-KNSPPPLSLYGQ 293 Query: 285 LIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLN 344 L+WREF+ P + P +I W+K+ L W +G TGFP IDA M QL Sbjct: 294 LLWREFFYTAATNNPKFDQMEG-NPICVQIPWDKNPKALAKWTEGKTGFPWIDAIMTQLR 352 Query: 345 TIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSV 403 GW+H+ R A FL + DL W G + F LLD D + N G W W S Sbjct: 353 QEGWIHHLARHAVACFLTRGDLWNSWECGVKVFDELLLDADFSVNAGSWMW-LSCSAFFQ 411 Query: 404 PYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLD------KNDLSLNYP 457 +F + P G+R DP G +++ +LP L P++YI+ P S + K + ++YP Sbjct: 412 QFFHCYCPVGFGRRTDPSGDYVKRYLPVLKAFPSRYIYEPWSAPESVQKEAKCIIGIDYP 471 Query: 458 LPIVDHKKACHHTLNQYYAAKKQ 480 PIV+H +A + + +Q Sbjct: 472 KPIVNHAEASRMNIERMKQTYQQ 494 >gi|8698586|dbj|BAA96847.1| cryptochrome 1b [Danio rerio] Length = 606 Score = 365 bits (938), Expect = 7e-99, Method: Composition-based stats. Identities = 119/494 (24%), Positives = 201/494 (40%), Gaps = 31/494 (6%) Query: 10 HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69 + W R LR+ DN +L + +D + V+I P + + F+ L + Sbjct: 5 TVHWFRKGLRLHDNPSLRDSIKGAD-NLRCVYILDPWFAGSSNVGISRWRFLLQCLEDLD 63 Query: 70 KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL-Q 128 SL + + D + ++++L Y E RD + K + Sbjct: 64 ASLRKLNSRLFVIRGQPTD----VFPRLFKEWKISRLSYEYDSEPFGKDRDAAIRKLATE 119 Query: 129 HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188 V L I+ + + LI + ++ + + A + Sbjct: 120 AGVEVFVRISHTLYDLDKIIEFNGGQSPLTYKRFQTLISRMDPVEMPAETITAEIMGKCS 179 Query: 189 TPSN--------IPRFFDYPFQA---IDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIP 237 TP + +P + F+ ++P GE AL L + + K + +R Sbjct: 180 TPVSDDHDNKFGVPSLEELGFETEGLSTAVWPGGETEALTRLERHLERKAWVANFERPRM 239 Query: 238 AIQGT----SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRH 293 + LSPYL G LS R + +L + + + K + + S +L+WREF+ Sbjct: 240 NANSLLASPTGLSPYLRFGCLSCRLFYFKLTDLYRKVK-KNSTPSLSLYGQLLWREFFYT 298 Query: 294 LMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRL 353 P + F P +I W+++ L W +G TGFP IDA M QL GW+H+ Sbjct: 299 AATNNPHFDKME-FNPICVQIPWDRNPEALAKWAEGQTGFPWIDAIMTQLRQEGWIHHLA 357 Query: 354 RMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPT 412 R A FL + DL + W G + F LLD D + N G W W S + +F + P Sbjct: 358 RHAVACFLTRGDLWISWEEGMKVFEELLLDADWSVNAGSWMW-LSCSSFFQQFFHCYCPV 416 Query: 413 IQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLD------KNDLSLNYPLPIVDHKKA 466 G+R DP G +IR +LP L P ++I+ P + + K + ++YP P+V+H +A Sbjct: 417 GFGRRTDPNGDYIRRYLPILRGFPAKFIYDPWNAPESVQKVAKCIIGVHYPKPMVNHAEA 476 Query: 467 CHHTLNQYYAAKKQ 480 + + +Q Sbjct: 477 SRINIERMKQIYQQ 490 >gi|45383642|ref|NP_989575.1| cryptochrome-2 [Gallus gallus] gi|19550965|gb|AAK61386.1| cryptochrome 2 [Gallus gallus] Length = 582 Score = 365 bits (938), Expect = 7e-99, Method: Composition-based stats. Identities = 122/494 (24%), Positives = 193/494 (39%), Gaps = 31/494 (6%) Query: 10 HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69 + W R LR+ DN AL AA + A + ++I P + + F+ SL + Sbjct: 14 SVHWFRRGLRLHDNPALQAALRGA-ASLRCIYILDPWFAASSAVGINRWRFLLQSLEDLD 72 Query: 70 KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH 129 SL + + D + VT+L + E RD + K + Sbjct: 73 NSLRKLNSRLFVVRGQPTD----VFPRLFKEWGVTRLTFEYDSEPFGKERDAAIIKLAKE 128 Query: 130 -RVICKSFDDSVLLPPGSILNHAL-QMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187 V + L I+ + Y F+ + + + S V T Sbjct: 129 AGVEVVIENSHTLYDLDRIIELNGNKPPLTYKRFQAIISRMELPKKPVSSIVSQQMETCK 188 Query: 188 VTPSNIP-------RFFDYPFQA---IDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIP 237 V + F ++ GE AL L K + K + +R Sbjct: 189 VDIQENHDDVYGVPSLEELGFPTDGLAPAVWQGGETEALARLDKHLERKAWVANYERPRM 248 Query: 238 AIQGT----SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRH 293 + LSPYL G LS R + RL E + + + + S +L+WREF+ Sbjct: 249 NANSLLASPTGLSPYLRFGCLSCRLFYYRLWELYKKVK-RNSTPPLSLYGQLLWREFFYT 307 Query: 294 LMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRL 353 P + P +I W+K+ L W +G TGFP IDA M QL GW+H+ Sbjct: 308 AATNNPKFDRMEG-NPICIQIPWDKNPEALAKWAEGKTGFPWIDAIMTQLRQEGWIHHLA 366 Query: 354 RMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPT 412 R A FL + DL + W G F LLD D + N G W W S +F + P Sbjct: 367 RHAVACFLTRGDLWISWESGVRVFDELLLDADFSVNAGSWMW-LSCSAFFQQFFHCYCPV 425 Query: 413 IQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLD------KNDLSLNYPLPIVDHKKA 466 G+R DP G +++ +LP+L P++YI+ P + + K + ++YP P+V+H + Sbjct: 426 GFGRRTDPSGDYVKRYLPKLKGFPSRYIYEPWNAPESVQKAAKCIIGVDYPKPMVNHAET 485 Query: 467 CHHTLNQYYAAKKQ 480 + + +Q Sbjct: 486 SRLNIERMKQIYQQ 499 >gi|148540005|ref|NP_571865.4| cryptochrome 1b [Danio rerio] gi|27882364|gb|AAH44558.1| Cry1b protein [Danio rerio] Length = 606 Score = 365 bits (938), Expect = 7e-99, Method: Composition-based stats. Identities = 119/494 (24%), Positives = 201/494 (40%), Gaps = 31/494 (6%) Query: 10 HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69 + W R LR+ DN +L + +D + V+I P + + F+ L + Sbjct: 5 TVHWFRKGLRLHDNPSLRDSIKGAD-NLRCVYILDPWFAGSSNVGISRWRFLLQCLEDLD 63 Query: 70 KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL-Q 128 SL + + D + ++++L Y E RD + K + Sbjct: 64 ASLRKLNSRLFVIRGQPTD----VFPRLFKEWKISRLSYEYDSEPFGKDRDAAIRKLATE 119 Query: 129 HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188 V L I+ + + LI + ++ + + A + Sbjct: 120 AGVEVFVRISHTLYDLDKIIEFNGGQSPLTYKRFQTLISRMDPVEMPAETITAEIMGKCS 179 Query: 189 TPSN--------IPRFFDYPFQA---IDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIP 237 TP + +P + F+ ++P GE AL L + + K + +R Sbjct: 180 TPVSDDHDDKFGVPSLEELGFETEGLSTAVWPGGETEALTRLERHLERKAWVANFERPRM 239 Query: 238 AIQGT----SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRH 293 + LSPYL G LS R + +L + + + K + + S +L+WREF+ Sbjct: 240 NANSLLASPTGLSPYLRFGCLSCRLFYFKLTDLYRKVK-KNSTPSLSLYGQLLWREFFYT 298 Query: 294 LMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRL 353 P + F P +I W+++ L W +G TGFP IDA M QL GW+H+ Sbjct: 299 AATNNPHFDKME-FNPICVQIPWDRNPEALAKWAEGQTGFPWIDAIMTQLRQEGWIHHLA 357 Query: 354 RMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPT 412 R A FL + DL + W G + F LLD D + N G W W S + +F + P Sbjct: 358 RHAVACFLTRGDLWISWEEGMKVFEELLLDADWSVNAGSWMW-LSCSSFFQQFFHCYCPV 416 Query: 413 IQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLD------KNDLSLNYPLPIVDHKKA 466 G+R DP G +IR +LP L P ++I+ P + + K + ++YP P+V+H +A Sbjct: 417 GFGRRTDPNGDYIRRYLPILRGFPAKFIYDPWNAPESVQKVAKCIIGVHYPKPMVNHAEA 476 Query: 467 CHHTLNQYYAAKKQ 480 + + +Q Sbjct: 477 SRINIERMKQIYQQ 490 >gi|91204921|ref|YP_537276.1| deoxyribodipyrimidine photo-lyase [Rickettsia bellii RML369-C] gi|91068465|gb|ABE04187.1| Deoxyribodipyrimidine photo-lyase [Rickettsia bellii RML369-C] Length = 475 Score = 365 bits (937), Expect = 8e-99, Method: Composition-based stats. Identities = 155/485 (31%), Positives = 239/485 (49%), Gaps = 32/485 (6%) Query: 8 SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQH-GISARQSHFIYASLL 66 +VWLR +LR+ DNK+ AA NSD K++ +FI + R+ F+ +L Sbjct: 3 KTSIVWLRRNLRLHDNKSFAAALRNSD-KILPIFIFDTTILERFKNPHDRRLSFLANTLC 61 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 + L + + ++ + ++ ++ + YE N + RDK +++ Sbjct: 62 LINDELKKLKGKLLV----FYGKPLDIIPKLAATLKIENIYADEDYEPNNIERDKKVQEL 117 Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQA----DLRSLPVPAI 182 L + D +L+ P +L + YKVYTP+ +A + + + L + Sbjct: 118 LGSNCTLNLYCDHLLIKPDRVLTKDNKAYKVYTPYMQAFRKFIADNGSISHNKLLTNYSY 177 Query: 183 RLTGPVTPSNIPRFF--DYPFQAIDPMFPIGE----------QNALHILRKFCKEKVYYY 230 L G + D + + IG +NA ++L KF ++ Y Sbjct: 178 NLDGKLYTPQDIELKTIDLNIGKSEALKQIGYVYKEDELWQPKNAQNVLDKFITRRINRY 237 Query: 231 VEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREF 290 +D + GTS +SPYL G++S R+C+ + G+ +W+NELIWREF Sbjct: 238 KIDQDFLYLDGTSTISPYLRFGLVSIRECYRKAFNA------ASNPGSITWINELIWREF 291 Query: 291 YRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMH 350 Y ++ +P+ + + KI WN + TG+PIIDAA++QL GWMH Sbjct: 292 YATILYHFPNTVNEEFLEKYKNKIPWNNKKEYFDKFINAETGYPIIDAAVKQLVGDGWMH 351 Query: 351 NRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFN 410 NR RMI ASF K+LL+DWR GEE+F L+D +LASN GGWQWA+S G D+ PYFRIFN Sbjct: 352 NRARMIVASFFSKNLLLDWRKGEEFFAQYLMDYELASNVGGWQWASSCGTDAQPYFRIFN 411 Query: 411 PTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHT 470 P QGK FDP +I+ +LP L NV IH ++ + + NYP PIVD+ + Sbjct: 412 PYTQGKNFDPDAEYIKKYLPILKNVQPHIIHN----INSHKMYDNYPKPIVDYGLSRAKA 467 Query: 471 LNQYY 475 + + Sbjct: 468 IEVFK 472 >gi|329764714|ref|ZP_08256309.1| Deoxyribodipyrimidine photolyase [Candidatus Nitrosoarchaeum limnia SFB1] gi|329138764|gb|EGG43005.1| Deoxyribodipyrimidine photolyase [Candidatus Nitrosoarchaeum limnia SFB1] Length = 451 Score = 365 bits (937), Expect = 9e-99, Method: Composition-based stats. Identities = 146/470 (31%), Positives = 229/470 (48%), Gaps = 26/470 (5%) Query: 10 HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69 L R DLR+ DN L A S+ +VI FI + S + F+ SL + Sbjct: 7 TLFIFRRDLRLEDNTGLIYALKTSN-EVIPCFILDTDILDNLKKSRLRIKFLNESLKDLN 65 Query: 70 KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH 129 + L ++ + + + + + L+ ++ +F N Y ++ ++K Sbjct: 66 EQLIKRKTNLRIFRGRSEEII----EKIILENKIDGVFLNGDYTKFAQLKENKIKKICNQ 121 Query: 130 RVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188 + I F D +L P I + Y VY+ F K V++ +++ + Sbjct: 122 KNIGFNKFADYLLHVPDEIHTKEQKPYTVYSYFYKTAKTIPVRSKIKNNFR-----NYSL 176 Query: 189 TPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPY 248 + + + M G +NAL IL+ + Y + RD P + T++LS + Sbjct: 177 DKIKNDNSLEITIENKEKM-EGGRRNALKILKNISE--YKNYQKTRDYPGLDKTTKLSAH 233 Query: 249 LSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFI 308 + G +S R+ + +KE + +N+L WREF+ +++ +P+ + F Sbjct: 234 IRFGTISVREAYQAIKENL--------GIDHTLINQLYWREFFTYVLHHFPN-SKSRTFK 284 Query: 309 PWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVD 368 KI W+ + W +G TGFPI+DA MRQLN G+MHNR+RMI ASFL KD+ +D Sbjct: 285 KKFRKIPWSTNKQEYHTWCKGETGFPIVDAGMRQLNKTGFMHNRVRMIVASFLTKDMHID 344 Query: 369 WRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHW 428 W++GE YF +L+D D A N G WQWAASTG D+VPYFRIFNP IQ ++FD +I+ W Sbjct: 345 WKLGERYFAEKLVDYDPAVNAGNWQWAASTGCDAVPYFRIFNPWIQQEKFDSNCNYIKKW 404 Query: 429 LPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478 +PEL + +YIH K L YP PI++HK + T + K Sbjct: 405 IPELETLQPKYIHNLWK---KYPEGLTYPKPILNHKIESNKTKIIFKNQK 451 >gi|63100688|gb|AAH95305.1| Cry2a protein [Danio rerio] gi|169158298|emb|CAQ13305.1| cryptochrome 2a [Danio rerio] Length = 658 Score = 365 bits (937), Expect = 9e-99, Method: Composition-based stats. Identities = 122/497 (24%), Positives = 200/497 (40%), Gaps = 37/497 (7%) Query: 10 HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69 + W R LR+ DN AL A +D V V+ P + + F+ L + Sbjct: 5 SIHWFRKGLRLHDNPALQEAVRGADT-VRCVYFLDPWFAGSSNLGVNRWRFLLQCLDDLD 63 Query: 70 KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH 129 +L + + + ++++L + E RD ++K Sbjct: 64 SNLRKLNSRLFVVRG----QPANVFPRLFKEWKISRLTFEYDSEPFGKERDAAIKKLAME 119 Query: 130 RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLV-QADLRSLPVPAIRLT--- 185 + S L L+ +++ P Q L+ + D +PV + + Sbjct: 120 AGVEVIVKTSHTLYN---LDKIIELNGGQPPLTYKRFQTLISRMDPPEMPVETLSNSIMG 176 Query: 186 GPVTPSNIPRFFDYPFQAIDPM-----------FPIGEQNALHILRKFCKEKVYYYVEQR 234 VTP + Y +++ + +P GE AL + + + K + +R Sbjct: 177 CCVTPVSEDHGDKYGVPSLEELGFDIEGLPSAVWPGGETEALTRIERHLERKAWVANFER 236 Query: 235 DIPAIQGT----SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREF 290 + LSPYL G LS R + +L + + + K + S +L+WREF Sbjct: 237 PRMNANSLLASPTGLSPYLRFGCLSCRLFYFKLTDLYRKVK-KTSTPPLSLYGQLLWREF 295 Query: 291 YRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMH 350 + P + P +I W+K+ L W + TGFP IDA M QL GW+H Sbjct: 296 FYTAATTNPRFDKMEG-NPICVRIPWDKNPEALAKWAEAKTGFPWIDAIMTQLRQEGWIH 354 Query: 351 NRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIF 409 + R A FL + DL + W G + F LLD D + N G W W S + +F + Sbjct: 355 HLARHAVACFLTRGDLWISWEEGMKVFEELLLDADWSVNAGSWMW-LSCSSFFQQFFHCY 413 Query: 410 NPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLD------KNDLSLNYPLPIVDH 463 P G+R DP G FIR +LP L P +YI+ P + D K + ++YP P+V+H Sbjct: 414 CPVGFGRRTDPNGDFIRRYLPILRGFPAKYIYDPWNAPDSVQAAAKCIIGVHYPKPMVNH 473 Query: 464 KKACHHTLNQYYAAKKQ 480 +A + + +Q Sbjct: 474 AEASRLNIERMKQIYQQ 490 >gi|15341194|gb|AAK94667.1| cryptochrome 2b [Xenopus laevis] Length = 570 Score = 365 bits (937), Expect = 9e-99, Method: Composition-based stats. Identities = 126/507 (24%), Positives = 207/507 (40%), Gaps = 40/507 (7%) Query: 1 MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHF 60 M+ ++S + W R LR+ DN AL AA +++ V V+I P + F Sbjct: 1 MEGKPSVS-SVHWFRKGLRLHDNPALLAALRGANS-VRCVYILDPWFAASSSGGVNRWRF 58 Query: 61 IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120 + SL + SL + + + + V++L + E RD Sbjct: 59 LLQSLEDLDSSLRKLNSRLFVVRG----QPADVFPKLFKEWGVSRLTFEYDSEPFGKERD 114 Query: 121 KLLEKRLQH-RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLV-QADLRSLP 178 ++ K + V + L ++ ++ P Q ++ + +L P Sbjct: 115 AVIMKLAKEAGVEVIVENSHTLYDLDRVI----ELNGHSPPLTYKRFQAIISRMELPRRP 170 Query: 179 VPAIRLT-----------GPVTPSNIPRFFDYPFQAID---PMFPIGEQNALHILRKFCK 224 P++ +P + F + + ++P GE AL L + + Sbjct: 171 APSVTRQQMEACRAEIKRNHDETYGVPSLEELGFHSENKGHAIWPGGETEALARLDRHLE 230 Query: 225 EKVYYYVEQRDIPAIQGT----SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFS 280 K + +R + + LSPYL G LS R + RL+E + + K S Sbjct: 231 RKAWVANYERPRMSANSLLASPTGLSPYLRFGCLSCRLFYYRLQELYQKVK-KNSPPPLS 289 Query: 281 WLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAM 340 +L+WREF+ P + P +I W+K+ L W +G TGFP IDA M Sbjct: 290 LYGQLLWREFFYTAATNNPKFDQMEG-NPICVQIPWDKNPKALAKWTEGKTGFPWIDAIM 348 Query: 341 RQLNTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTG 399 QL GW+H+ R A FL + DL W G + F LLD D + N G W W S Sbjct: 349 TQLRQEGWIHHLARHAVACFLTRGDLWNSWECGVKVFDELLLDADFSVNAGSWMW-LSCS 407 Query: 400 NDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLD------KNDLS 453 +F + P G+R DP G +++ +LP L P++YI+ P S + K + Sbjct: 408 AFFQQFFHCYCPVGFGRRTDPSGDYVKRYLPVLKAFPSRYIYEPWSAPESVQKEAKCIIG 467 Query: 454 LNYPLPIVDHKKACHHTLNQYYAAKKQ 480 ++YP PIV+H +A + + +Q Sbjct: 468 IDYPKPIVNHAEASRMNIERMKQTYQQ 494 >gi|169158299|emb|CAQ13306.1| cryptochrome 2a [Danio rerio] Length = 659 Score = 365 bits (937), Expect = 1e-98, Method: Composition-based stats. Identities = 122/497 (24%), Positives = 200/497 (40%), Gaps = 37/497 (7%) Query: 10 HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69 + W R LR+ DN AL A +D V V+ P + + F+ L + Sbjct: 5 SIHWFRKGLRLHDNPALQEAVRGADT-VRCVYFLDPWFAGSSNLGVNRWRFLLQCLDDLD 63 Query: 70 KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH 129 +L + + + ++++L + E RD ++K Sbjct: 64 SNLRKLNSRLFVVRG----QPANVFPRLFKEWKISRLTFEYDSEPFGKERDAAIKKLAME 119 Query: 130 RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLV-QADLRSLPVPAIRLT--- 185 + S L L+ +++ P Q L+ + D +PV + + Sbjct: 120 AGVEVIVKTSHTLYN---LDKIIELNGGQPPLTYKRFQTLISRMDPPEMPVETLSNSIMG 176 Query: 186 GPVTPSNIPRFFDYPFQAIDPM-----------FPIGEQNALHILRKFCKEKVYYYVEQR 234 VTP + Y +++ + +P GE AL + + + K + +R Sbjct: 177 CCVTPVSEDHGDKYGVPSLEELGFDIEGLPSAVWPGGETEALTRIERHLERKAWVANFER 236 Query: 235 DIPAIQGT----SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREF 290 + LSPYL G LS R + +L + + + K + S +L+WREF Sbjct: 237 PRMNANSLLASPTGLSPYLRFGCLSCRLFYFKLTDLYRKVK-KTSTPPLSLYGQLLWREF 295 Query: 291 YRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMH 350 + P + P +I W+K+ L W + TGFP IDA M QL GW+H Sbjct: 296 FYTAATTNPRFDKMEG-NPICVRIPWDKNPEALAKWAEAKTGFPWIDAIMTQLRQEGWIH 354 Query: 351 NRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIF 409 + R A FL + DL + W G + F LLD D + N G W W S + +F + Sbjct: 355 HLARHAVACFLTRGDLWISWEEGMKVFEELLLDADWSVNAGSWMW-LSCSSFFQQFFHCY 413 Query: 410 NPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLD------KNDLSLNYPLPIVDH 463 P G+R DP G FIR +LP L P +YI+ P + D K + ++YP P+V+H Sbjct: 414 CPVGFGRRTDPNGDFIRRYLPILRGFPAKYIYDPWNAPDSVQAAAKCIIGVHYPKPMVNH 473 Query: 464 KKACHHTLNQYYAAKKQ 480 +A + + +Q Sbjct: 474 AEASRLNIERMKQIYQQ 490 >gi|53725670|ref|YP_102418.1| deoxyribodipyrimidine photolyase [Burkholderia mallei ATCC 23344] gi|52429093|gb|AAU49686.1| deoxyribodipyrimidine photolyase [Burkholderia mallei ATCC 23344] Length = 497 Score = 365 bits (937), Expect = 1e-98, Method: Composition-based stats. Identities = 151/494 (30%), Positives = 239/494 (48%), Gaps = 24/494 (4%) Query: 1 MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHF 60 + ++ +++ +VW +DLR++D+ AL A S VI V++ + A + Sbjct: 12 LSSSISIAPAVVWFCDDLRVSDHPALMRAAE-SGRPVIGVYVFDERAGGRPLGGAARWW- 69 Query: 61 IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120 ++ SL ++L D + + S+ ++++R+Y + D Sbjct: 70 LHGSL----RALGAALAALGGTLALLRGDEHDTIVSFAAALGAGAVYWSRRYALAARAVD 125 Query: 121 KLLEKRLQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPV 179 ++ L + I ++F+ S+L PG ++N + Y+V++ + +A ++ V A P Sbjct: 126 NAVQTALDAQGIAVETFNASLLFEPGDLVNADGRPYQVFSAYWRAAMRRGVPAPPLGAPR 185 Query: 180 PAIRLTGPVTPSNIPRFFD-YPFQAIDPMFPIG--------EQNALHILRKFCKEKVYYY 230 P + D + P + G E A LR F ++ Y Sbjct: 186 RLNGGALPAALARQCVALDALGLEPTGPDWAGGLRDAWRFGEDAAHRRLRAFVDSRLGGY 245 Query: 231 VEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREF 290 +RD P I TS+LSPY+ G LS RQ W+ + + ++ +L+EL WREF Sbjct: 246 AAERDRPGIASTSRLSPYVRFGNLSARQLWHAAADAYAHGAAT-QADLDKFLSELGWREF 304 Query: 291 YRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMH 350 + +P + + + + W D L AW++G TG+P +DA MR+L GWMH Sbjct: 305 GWTQLHHFPDLPR-RNLRHTLDGMPWRDDPAALAAWRRGATGYPFVDAGMRELWATGWMH 363 Query: 351 NRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFN 410 NR+RM+ ASFLVK LL+DWR GE +F L+D D ASN WQW A G D+ PYFRIFN Sbjct: 364 NRVRMVCASFLVKHLLIDWRAGEAWFWDTLVDADAASNAANWQWVAGCGADAAPYFRIFN 423 Query: 411 PTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKN------DLSLNYPLPIVDHK 464 P QG++FDP G ++R W+PEL +P IH P + L YPLPIV + Sbjct: 424 PVAQGRKFDPDGAYVRRWVPELAGLPPATIHEPWAAPGAQLAAAGVRLGETYPLPIVAYD 483 Query: 465 KACHHTLNQYYAAK 478 A L+ + A + Sbjct: 484 AARRRALDAFGAIR 497 >gi|124383478|ref|YP_001028857.1| deoxyribodipyrimidine photolyase [Burkholderia mallei NCTC 10229] gi|254357787|ref|ZP_04974060.1| deoxyribodipyrimidine photolyase [Burkholderia mallei 2002721280] gi|124291498|gb|ABN00767.1| deoxyribodipyrimidine photolyase [Burkholderia mallei NCTC 10229] gi|148026914|gb|EDK84935.1| deoxyribodipyrimidine photolyase [Burkholderia mallei 2002721280] Length = 534 Score = 365 bits (937), Expect = 1e-98, Method: Composition-based stats. Identities = 151/494 (30%), Positives = 239/494 (48%), Gaps = 24/494 (4%) Query: 1 MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHF 60 + ++ +++ +VW +DLR++D+ AL A S VI V++ + A + Sbjct: 49 LSSSISIAPAVVWFCDDLRVSDHPALMRAAE-SGRPVIGVYVFDERAGGRPLGGAARWW- 106 Query: 61 IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120 ++ SL ++L D + + S+ ++++R+Y + D Sbjct: 107 LHGSL----RALGAALAALGGTLALLRGDEHDTIVSFAAALGAGAVYWSRRYALAARAVD 162 Query: 121 KLLEKRLQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPV 179 ++ L + I ++F+ S+L PG ++N + Y+V++ + +A ++ V A P Sbjct: 163 NAVQTALDAQGIAVETFNASLLFEPGDLVNADGRPYQVFSAYWRAAMRRGVPAPPLGAPR 222 Query: 180 PAIRLTGPVTPSNIPRFFD-YPFQAIDPMFPIG--------EQNALHILRKFCKEKVYYY 230 P + D + P + G E A LR F ++ Y Sbjct: 223 RLNGGALPAALARQCVALDALGLEPTGPDWAGGLRDAWRFGEDAAHRRLRAFVDSRLGGY 282 Query: 231 VEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREF 290 +RD P I TS+LSPY+ G LS RQ W+ + + ++ +L+EL WREF Sbjct: 283 AAERDRPGIASTSRLSPYVRFGNLSARQLWHAAADAYAHGAAT-QADLDKFLSELGWREF 341 Query: 291 YRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMH 350 + +P + + + + W D L AW++G TG+P +DA MR+L GWMH Sbjct: 342 GWTQLHHFPDLPR-RNLRHTLDGMPWRDDPAALAAWRRGATGYPFVDAGMRELWATGWMH 400 Query: 351 NRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFN 410 NR+RM+ ASFLVK LL+DWR GE +F L+D D ASN WQW A G D+ PYFRIFN Sbjct: 401 NRVRMVCASFLVKHLLIDWRAGEAWFWDTLVDADAASNAANWQWVAGCGADAAPYFRIFN 460 Query: 411 PTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKN------DLSLNYPLPIVDHK 464 P QG++FDP G ++R W+PEL +P IH P + L YPLPIV + Sbjct: 461 PVAQGRKFDPDGAYVRRWVPELAGLPPATIHEPWAAPGAQLAAAGVRLGETYPLPIVAYD 520 Query: 465 KACHHTLNQYYAAK 478 A L+ + A + Sbjct: 521 AARRRALDAFGAIR 534 >gi|229488858|ref|ZP_04382724.1| deoxyribodipyrimidine photo-lyase [Rhodococcus erythropolis SK121] gi|229324362|gb|EEN90117.1| deoxyribodipyrimidine photo-lyase [Rhodococcus erythropolis SK121] Length = 448 Score = 365 bits (936), Expect = 1e-98, Method: Composition-based stats. Identities = 146/475 (30%), Positives = 230/475 (48%), Gaps = 31/475 (6%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 MS ++W R DLR+ D L AA ++ + + +F+ + + + + ++A+L Sbjct: 1 MSNSVIWFRRDLRVGDLPTLTAAA-DAGGQTLGLFVLDEKLLG--PAGSPRQNQLFANLS 57 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 + L + +V + D + + ++ + Y RRD + Sbjct: 58 ALDNQLDGRLMVVR-------GDPADVVPRVAESVGAEEVHISADYGPYGRRRDAAVA-- 108 Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 +V + + PG + YKV+TP+ + +++ + S V +R Sbjct: 109 --EKVELIATGSPYAVAPGRVTKADGDPYKVFTPYFRQWMEHGWRGPA-STDVGTVRWFD 165 Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246 P PR P + +GE AL +++C+ + Y ++R+ P + TS++S Sbjct: 166 PSEKDGGPRRVSIPAPSGTVSDVVGEAGALEQWKEYCENDLDRYDDERNRPDLDTTSRMS 225 Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP 306 L G + PR DL + GA ++ +L WR+FY ++ P K Sbjct: 226 IPLKYGTIHPRTML-------ADLSKRLGDGAQAYRRQLAWRDFYADILFQRPDSAR-KN 277 Query: 307 FIPWTEKIEWN---KDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363 + +++ + AW +G TGFPI+DA MRQL WMHNR+RMI ASFLVK Sbjct: 278 YDDKFDRLRHDGGVDADAAFTAWCEGKTGFPIVDAGMRQLAAENWMHNRVRMIVASFLVK 337 Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423 DL + W G YFMSQL+DGDLASN GWQW A +G D+ P+FR+FNP QG++FDP GT Sbjct: 338 DLHIPWWRGARYFMSQLVDGDLASNQHGWQWTAGSGTDASPFFRVFNPITQGEKFDPDGT 397 Query: 424 FIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478 ++R W+PEL +VP + +H K ++YP PIVDH L +Y K Sbjct: 398 YVRRWVPELRDVPGKAVH-----SLKAMRPVDYPDPIVDHAHEREEALRRYGEIK 447 >gi|109106624|ref|XP_001113162.1| PREDICTED: cryptochrome-2-like [Macaca mulatta] Length = 593 Score = 365 bits (936), Expect = 1e-98, Method: Composition-based stats. Identities = 124/494 (25%), Positives = 195/494 (39%), Gaps = 31/494 (6%) Query: 10 HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69 + W R LR+ DN AL AA + V V+I P + + F+ SL + Sbjct: 24 SVHWFRKGLRLHDNPALLAAVRGARC-VRCVYILDPWFAASSSVGINRWRFLLQSLEDLD 82 Query: 70 KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH 129 SL + + + + VT+L + E RD + K + Sbjct: 83 TSLRKLNSRLFVVRG----QPADVFPRLFKEWGVTRLTFEYDSEPFGKERDAAIMKMAKE 138 Query: 130 -RVICKSFDDSVLLPPGSILNHALQ-MYKVYTPFRKALIQNLVQADL-------RSLPVP 180 V + + L I+ Q Y F+ + + + + Sbjct: 139 AGVEVVTENSHTLYDLERIIELNGQKPPLTYKRFQAIISRMELPKKPVGSVTSQQMESCR 198 Query: 181 AIRLTGPVTPSNIPRFFDYPF--QAIDPM-FPIGEQNALHILRKFCKEKVYYYVEQRDIP 237 A +P + F + + P + GE AL L K + K + +R Sbjct: 199 AEIQENHDETYGVPSLEELGFPTEGLGPAVWQGGETEALARLDKHLERKAWVANYERPRM 258 Query: 238 AIQGT----SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRH 293 + LSPYL G LS R + RL + + + + + S +L+WREF+ Sbjct: 259 NANSLLASPTGLSPYLRFGCLSCRLFYYRLWDLYKKVK-RNSTPPLSLFGQLLWREFFYT 317 Query: 294 LMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRL 353 P + P +I W+++ L W +G TGFP IDA M QL GW+H+ Sbjct: 318 AATNNPRFDRMEG-NPICIQIPWDRNPEALAKWAEGKTGFPWIDAIMTQLRQEGWIHHLA 376 Query: 354 RMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPT 412 R A FL + DL V W G F LLD D + N G W W S +F + P Sbjct: 377 RHAVACFLTRGDLWVSWESGVRVFDELLLDADFSVNAGSWMW-LSCSAFFQQFFHCYCPV 435 Query: 413 IQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLD------KNDLSLNYPLPIVDHKKA 466 G+R DP G +IR +LP+L P++YI+ P + + K + ++YP PIV+H + Sbjct: 436 GFGRRTDPSGDYIRRYLPKLKGFPSRYIYEPWNAPESIQKAAKCIIGVDYPRPIVNHAET 495 Query: 467 CHHTLNQYYAAKKQ 480 + + +Q Sbjct: 496 SRLNIERMKQIYQQ 509 >gi|118572251|sp|Q8QG60|CRY2_CHICK RecName: Full=Cryptochrome-2 Length = 582 Score = 365 bits (936), Expect = 1e-98, Method: Composition-based stats. Identities = 122/494 (24%), Positives = 193/494 (39%), Gaps = 31/494 (6%) Query: 10 HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69 + W R LR+ DN AL AA + A + ++I P + + F+ SL + Sbjct: 14 SVHWFRRGLRLHDNPALQAALRGA-ASLRCIYILDPWFAASSAVGINRWRFLLQSLEDLD 72 Query: 70 KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH 129 SL + + D + VT+L + E RD + K + Sbjct: 73 NSLRKLNSRLFVVRGQPTD----VFPRLFKEWGVTRLAFEYDSEPFGKERDAAIIKLAKE 128 Query: 130 -RVICKSFDDSVLLPPGSILNHAL-QMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187 V + L I+ + Y F+ + + + S V T Sbjct: 129 AGVEVVIENSHTLYNLDRIIELNGNKPPLTYKRFQAIISRMELPKKPVSSIVSQQMETCK 188 Query: 188 VTPSNIP-------RFFDYPFQA---IDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIP 237 V + F ++ GE AL L K + K + +R Sbjct: 189 VDIQENHDDVYGVPSLEELGFPTDGLAPAVWQGGETEALARLDKHLERKAWVANYERPRM 248 Query: 238 AIQGT----SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRH 293 + LSPYL G LS R + RL E + + + + S +L+WREF+ Sbjct: 249 NANSLLASPTGLSPYLRFGCLSCRLFYYRLWELYKKVK-RNSTPPLSLYGQLLWREFFYT 307 Query: 294 LMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRL 353 P + P +I W+K+ L W +G TGFP IDA M QL GW+H+ Sbjct: 308 AATNNPKFDRMEG-NPICIQIPWDKNPEALAKWAEGKTGFPWIDAIMTQLRQEGWIHHLA 366 Query: 354 RMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPT 412 R A FL + DL + W G F LLD D + N G W W S +F + P Sbjct: 367 RHAVACFLTRGDLWISWESGVRVFDELLLDADFSVNAGSWMW-LSCSAFFQQFFHCYCPV 425 Query: 413 IQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLD------KNDLSLNYPLPIVDHKKA 466 G+R DP G +++ +LP+L P++YI+ P + + K + ++YP P+V+H + Sbjct: 426 GFGRRTDPSGDYVKRYLPKLKGFPSRYIYEPWNAPESVQKAAKCIIGVDYPKPMVNHAET 485 Query: 467 CHHTLNQYYAAKKQ 480 + + +Q Sbjct: 486 SRLNIERMKQIYQQ 499 >gi|18858465|ref|NP_571866.1| cryptochrome-1 [Danio rerio] gi|8698588|dbj|BAA96848.1| cryptochrome 2a [Danio rerio] Length = 655 Score = 365 bits (936), Expect = 1e-98, Method: Composition-based stats. Identities = 122/497 (24%), Positives = 199/497 (40%), Gaps = 37/497 (7%) Query: 10 HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69 + W R LR+ DN AL A +D V V+ P + + F+ L + Sbjct: 5 SIHWFRKGLRLHDNPALQEAVRGADT-VRCVYFLDPWFAGSSNLGVNRWRFLLQCLDDLD 63 Query: 70 KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH 129 +L + + + ++++L + E RD ++K Sbjct: 64 SNLRKLNSRLFVVRG----QPANVFPRLFKEWKISRLTFEYDSEPFGKERDAAIKKLAME 119 Query: 130 RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLV-QADLRSLPVPAIRLT--- 185 + S L L+ +++ P Q L+ + D +PV + + Sbjct: 120 AGVEVIVKTSHTLYN---LDKIIELNGGQPPLTYKRFQTLISRMDPPEMPVETLSNSIMG 176 Query: 186 GPVTPSNIPRFFDYPFQAIDPM-----------FPIGEQNALHILRKFCKEKVYYYVEQR 234 VTP Y +++ + +P GE AL + + + K + +R Sbjct: 177 CCVTPVAEDHGDKYGVPSLEELGFDIEGLPSAVWPGGETEALTRIERHLERKAWVANFER 236 Query: 235 DIPAIQGT----SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREF 290 + LSPYL G LS R + +L + + + K + S +L+WREF Sbjct: 237 PRMNANSLLASPTGLSPYLRFGCLSCRLFYFKLTDLYRKVK-KTSTPPLSLYGQLLWREF 295 Query: 291 YRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMH 350 + P + P +I W+K+ L W + TGFP IDA M QL GW+H Sbjct: 296 FYTAATTNPRFDKMEG-NPICVRIPWDKNPEALAKWAEAKTGFPWIDAIMTQLRQEGWIH 354 Query: 351 NRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIF 409 + R A FL + DL + W G + F LLD D + N G W W S + +F + Sbjct: 355 HLARHAVACFLTRGDLWISWEEGMKVFEELLLDADWSVNAGSWMW-LSCSSFFQQFFHCY 413 Query: 410 NPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLD------KNDLSLNYPLPIVDH 463 P G+R DP G FIR +LP L P +YI+ P + D K + ++YP P+V+H Sbjct: 414 CPVGFGRRTDPNGDFIRRYLPILRGFPAKYIYDPWNAPDSVQAAAKCIIGVHYPKPMVNH 473 Query: 464 KKACHHTLNQYYAAKKQ 480 +A + + +Q Sbjct: 474 AEASRLNIERMKQIYQQ 490 >gi|291290513|dbj|BAI82612.1| cryptochrome 2 [Xenopus (Silurana) tropicalis] Length = 557 Score = 365 bits (936), Expect = 1e-98, Method: Composition-based stats. Identities = 127/497 (25%), Positives = 203/497 (40%), Gaps = 37/497 (7%) Query: 10 HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69 + W R LR+ DN AL AA ++ V V+I P + F+ SL + Sbjct: 3 SVHWFRKGLRLHDNPALSAALRDA-TSVRCVYILDPWFAASSSGGVNRWRFLLQSLEDLD 61 Query: 70 KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH 129 SL + + + + V++L + E RD ++ K + Sbjct: 62 TSLRKLNSRLFVVRG----QPADVFPRLFKEWGVSRLTFEYDSEPFGKERDAVIMKLAKE 117 Query: 130 RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLV-QADLRSLPVPAI---RLT 185 + ++S L L+ +++ P Q ++ + +L P P++ ++ Sbjct: 118 AGVEVIVENSHTLY---DLDRIIELNGHSPPLTYKRFQAIISRMELPRRPAPSVTRQQME 174 Query: 186 GPVTPSNIPRFFDYPFQAIDPM-----------FPIGEQNALHILRKFCKEKVYYYVEQR 234 Y ++D + +P GE AL L + + K + +R Sbjct: 175 ACRAEIKRNHDETYGVPSLDELGFHSEIKGPSIWPGGETEALARLDRHLERKAWVANYER 234 Query: 235 DIPAIQGT----SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREF 290 + LSPYL G LS R + RLKE + + K S +L+WREF Sbjct: 235 PRMNANSLLASPTGLSPYLRFGCLSCRLFYYRLKELYKKVK-KNSPPPLSLYGQLLWREF 293 Query: 291 YRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMH 350 + P + P +I W+K+ L W +G TGFP IDA M QL GW+H Sbjct: 294 FYTAATNNPKFDQMEG-NPICVQIPWDKNPKALAKWAEGKTGFPWIDAIMTQLRQEGWIH 352 Query: 351 NRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIF 409 + R A FL + DL W G + F LLD D + N G W W S +F + Sbjct: 353 HLARHAVACFLTRGDLWNSWECGVKVFDELLLDADFSVNAGSWMW-LSCSAFFQQFFHCY 411 Query: 410 NPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLD------KNDLSLNYPLPIVDH 463 P G+R DP G ++R +LP L P++YI+ P S + K + ++YP PIV+H Sbjct: 412 CPVGFGRRTDPSGDYVRRYLPVLKAFPSRYIYEPWSAPESVQKEAKCIIGIDYPKPIVNH 471 Query: 464 KKACHHTLNQYYAAKKQ 480 +A + + +Q Sbjct: 472 AEASRMNIERMKQTYQQ 488 >gi|257058615|ref|YP_003136503.1| cryptochrome, DASH family [Cyanothece sp. PCC 8802] gi|256588781|gb|ACU99667.1| cryptochrome, DASH family [Cyanothece sp. PCC 8802] Length = 488 Score = 364 bits (935), Expect = 2e-98, Method: Composition-based stats. Identities = 133/499 (26%), Positives = 232/499 (46%), Gaps = 35/499 (7%) Query: 1 MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQ-----HGISA 55 M AT L+W RNDLR+ D++ ++ A A++I + ++ Sbjct: 3 MTATK----ILIWYRNDLRLHDHQPMFQAVKK-KAQIIPFYCFDDRHFKTTSFGFPKTGN 57 Query: 56 RQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEIN 115 +S F+ S+ ++K+L Q G + + + C + + ++++++ Sbjct: 58 FRSQFLLQSIDNLRKNLQQLGSNLVIRRG----YPEKIIPEICQELAIDAVYFHQEVTSE 113 Query: 116 EVRRDKLLEKRL-QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADL 174 E++ + LEK L Q V F + L P + ++ +++T FRK + + + Sbjct: 114 EIKVETALEKALTQMGVKLNPFWGTTLYHPDDLPFTLAEIPELFTNFRKQVEKKSLINST 173 Query: 175 RSLPVPAIRLTGPVTPSNIPRFFDYPFQAID------PMFPIGEQNALHILRKFC--KEK 226 P L + NIP + + + F GE + L ++ K + Sbjct: 174 FPTPKKLPSLPN-LDLGNIPTLAELGLETPEFDSRGVLEFIGGESEGIKRLNQYFWQKNR 232 Query: 227 VYYYVEQRD-IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNEL 285 + Y E R+ + +S+ SP+L++G LSPR + + + ++ + + + EL Sbjct: 233 LKDYKETRNGMLGSDYSSKFSPWLALGCLSPRYIYEEVTKYELERV--KNDSTYWLIFEL 290 Query: 286 IWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNT 345 +WR+++R + A + + + + W +D Q W+ G TG+P++DA M +L Sbjct: 291 LWRDYFRFICAKHGNKVFYSSGLQGF-NLPWKEDWQRFQLWQTGNTGYPLVDANMTELAA 349 Query: 346 IGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPY 405 G+M NR R ASFL K+L ++W +G E+F S L+D D+ SN G W + A GND+ Sbjct: 350 TGFMSNRGRQNVASFLTKNLGINWLMGAEWFESVLIDYDVCSNYGNWNYTAGVGNDARG- 408 Query: 406 FRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND------LSLNYPLP 459 FR FN Q K +DP+G ++RHWLPEL +P IH P L ++YP P Sbjct: 409 FRYFNIPKQSKDYDPKGNYLRHWLPELKTIPGDKIHEPWKLSQAEQKQYRVNLGVDYPRP 468 Query: 460 IVDHKKACHHTLNQYYAAK 478 IVD K+ Y A+ Sbjct: 469 IVDFFKSIKANEAIYNNAQ 487 >gi|284052713|ref|ZP_06382923.1| DNA photolyase [Arthrospira platensis str. Paraca] gi|291567701|dbj|BAI89973.1| deoxyribopyrimidine photolyase [Arthrospira platensis NIES-39] Length = 490 Score = 364 bits (935), Expect = 2e-98, Method: Composition-based stats. Identities = 126/490 (25%), Positives = 227/490 (46%), Gaps = 31/490 (6%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQ-----HGISARQSHFIYASL 65 ++W RNDLR+ D++ L A ++ ++I ++ P Q+ + + F+ S+ Sbjct: 9 ILWYRNDLRLHDHEPLDLAT-STQGQIIPLYCFDPRQFAKTSFGFPKTGGFRGKFLLESV 67 Query: 66 LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125 ++ + + G + + Q + ++Y+++ E+ + LEK Sbjct: 68 ADLRHNFQKIGSNLLVR----IGEPERVIFDLVKQLNIDAVYYHKEVTAEELAVETALEK 123 Query: 126 RL-QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL 184 L V KSF + L + ++ +++T FRK + Q V + P + Sbjct: 124 ALTPLGVEVKSFWGATLYHLKELPFPIEKLPELFTNFRKQVEQKSVIYPPYTPPNQLPQF 183 Query: 185 TGPVTPSNIPRFFDYPF------QAIDPMFPIGEQNALHILRKFCKEKV--YYYVEQRD- 235 + P IP + + F GE L L + + Y + R+ Sbjct: 184 PD-IEPGEIPTLTELGITPAPFDERSVLDFAGGETAGLSRLNDYFWRRDCLKNYKQTRNG 242 Query: 236 IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLM 295 + +S+ SP+L+ G LSPR + ++++ + + + EL+WR+++R + Sbjct: 243 MLGSDYSSKFSPWLANGCLSPRWIYQQVQDYQHQRV--KNDSTYWLVFELLWRDYFRFIC 300 Query: 296 AFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRM 355 + K + KI W ++ Q W QG TGFP++DA MR+L G+M NR R Sbjct: 301 LKHGPKVFYKSGLQGV-KIPWGENWEQWQIWCQGLTGFPLVDANMRELAATGFMSNRGRQ 359 Query: 356 ITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQG 415 ASFL K+L ++W++G E+F S L+D D+ SN G W + A GND FR FN Q Sbjct: 360 NVASFLTKNLGINWQMGAEWFESVLIDYDVCSNWGNWNYTAGVGNDGRG-FRYFNIAKQS 418 Query: 416 KRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDL------SLNYPLPIVDHKKACHH 469 + +DP G +++HWLPEL ++P +H+P ++ + ++YP P+VD +++ Sbjct: 419 QDYDPMGDYVKHWLPELASIPDGRVHSPWRLSNQEQIRFGVRLGVDYPYPMVDLQESVEA 478 Query: 470 TLNQYYAAKK 479 Y A + Sbjct: 479 NRRIYEKALR 488 >gi|89891446|ref|ZP_01202951.1| deoxyribodipyrimidine photo-lyase [Flavobacteria bacterium BBFL7] gi|89516220|gb|EAS18882.1| deoxyribodipyrimidine photo-lyase [Flavobacteria bacterium BBFL7] Length = 440 Score = 364 bits (935), Expect = 2e-98, Method: Composition-based stats. Identities = 150/481 (31%), Positives = 224/481 (46%), Gaps = 53/481 (11%) Query: 6 AMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASL 65 + V++ W R D+R+ DN A SD V+ +FI E + FIY L Sbjct: 2 SKKVNIFWFRRDMRLDDNVGFLEALK-SDYPVLPIFIFDKEILDHLPEDDARVTFIYEEL 60 Query: 66 LQVQKSLSQ-KGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLE 124 +++ +L + + E +D+Y V +F NR YE RD L Sbjct: 61 QRMRNNLQENHDSSLATFYGKPLNIWQEIIDNY----EVNAVFTNRDYEPYAQERDLKLT 116 Query: 125 KRL-QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQA----DLRSLPV 179 + V +F D V+ I+ Y VYTP++ ++N + D ++ Sbjct: 117 SFFNEQNVAFHTFKDQVIYEKDDIVKDDGDPYVVYTPYKNKWLENFRKDYGKADNLTIHY 176 Query: 180 PAIRLTGPVTPSNIPRF--FDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIP 237 L + S +P D F+ P E N L + Y + R+ P Sbjct: 177 TNDYLDNCIKNSRLPNLNLSDIGFKKSSIEIP--EYNITPTL-------IEDYEKTRNYP 227 Query: 238 AIQ-GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMA 296 A++ GTS+L YL GV+S R+ + + ++++ELIWREF+ ++ Sbjct: 228 AMENGTSRLGVYLRFGVVSIRKMMKKA----------DLANEKTFMSELIWREFFMTILY 277 Query: 297 FYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMI 356 +P + F ++IEW + + WK G TG+ I+DA MR+LNT G+MHNR+RM+ Sbjct: 278 HFPH-TVDNAFRSKYDRIEWRNNESEFEKWKNGQTGYAIVDAGMRELNTTGYMHNRVRML 336 Query: 357 TASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGK 416 ASFL K LL+DWR GE YF +LLD DL++N G WQWAA +G D+ PYFRIFNP Q Sbjct: 337 VASFLCKHLLIDWRWGERYFAEKLLDFDLSANVGNWQWAAGSGVDAAPYFRIFNPITQKD 396 Query: 417 RFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYA 476 +FD +I+ W+PE + +Y +VDHK+A L Y Sbjct: 397 KFDKNYKYIKQWVPEFE-------------------TDDYVEKMVDHKEARERCLKTYKE 437 Query: 477 A 477 A Sbjct: 438 A 438 >gi|327259731|ref|XP_003214689.1| PREDICTED: cryptochrome-2-like [Anolis carolinensis] Length = 586 Score = 364 bits (935), Expect = 2e-98, Method: Composition-based stats. Identities = 126/498 (25%), Positives = 201/498 (40%), Gaps = 39/498 (7%) Query: 10 HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69 + W R LR+ DN AL AA + V ++I P + + F+ SL + Sbjct: 12 SVHWFRRGLRLHDNPALQAAIRDG-GPVRCIYILDPWFAASSSVGINRWRFLLQSLEDLD 70 Query: 70 KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH 129 SL + G + D + RVT+L + E RD + K + Sbjct: 71 NSLRKLGSRLFVVRGQPTD----VFPRLFKEWRVTRLTFEYDSEPFGKERDAAIVKLAKE 126 Query: 130 -RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLV-QADLRSLPVPAI----- 182 V + + L L+ +++ P Q ++ + DL PV +I Sbjct: 127 AGVEVITENSHTLYD----LDRIIELNGHKPPLTYKRFQTIISRMDLPKKPVASITHQQM 182 Query: 183 ------RLTGPVTPSNIPRFFDYPFQAID---PMFPIGEQNALHILRKFCKEKVYYYVEQ 233 +P + F ++ GE AL L K + K + + Sbjct: 183 EMCKTEIQDNHDETYGVPSLEELGFPTESLAPAVWLGGETEALTRLDKHLERKAWVANYE 242 Query: 234 RDIPAIQGT----SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWRE 289 R + LSPYL G LS R + RL E + + + + S +L+WRE Sbjct: 243 RPRMNANSLLASPTGLSPYLRFGCLSCRLFYYRLWELYKKVK-RNSTPPLSLYGQLLWRE 301 Query: 290 FYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWM 349 F+ P + P +I W+++ L W +G TGFP IDA M QL GW+ Sbjct: 302 FFYTAATNNPKFDRMEG-NPICIQIPWDRNPEALAKWAEGKTGFPWIDAIMTQLRQEGWI 360 Query: 350 HNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRI 408 H+ R A FL + DL + W G F LLD D + N+G W W S +F Sbjct: 361 HHLARHAVACFLTRGDLWISWESGVRVFDELLLDADFSVNSGSWMW-LSCSAFFQQFFHC 419 Query: 409 FNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLD------KNDLSLNYPLPIVD 462 + P G+R DP G ++R +LP+L P++YI+ P + + K + ++YP P+V+ Sbjct: 420 YCPVGFGRRTDPSGDYVRRYLPKLKGFPSRYIYEPWNAPESVQKAAKCIIGVDYPKPMVN 479 Query: 463 HKKACHHTLNQYYAAKKQ 480 H + + + +Q Sbjct: 480 HAETSRLNIERMKQIYQQ 497 >gi|85374236|ref|YP_458298.1| hypothetical protein ELI_07045 [Erythrobacter litoralis HTCC2594] gi|84787319|gb|ABC63501.1| hypothetical protein ELI_07045 [Erythrobacter litoralis HTCC2594] Length = 463 Score = 364 bits (935), Expect = 2e-98, Method: Composition-based stats. Identities = 153/482 (31%), Positives = 237/482 (49%), Gaps = 33/482 (6%) Query: 8 SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67 +VWLR DLR+ DN ALY A V+AV++ E+ + H + +++ SL Sbjct: 3 KPQIVWLRRDLRMADNPALYHAAKAG--PVVAVYVLDDERPKDHKLGGAARWWLHHSLES 60 Query: 68 VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127 + KS + + D++E L + + NR YE + + L Sbjct: 61 LGKSFGARNSRIVLRRG----DAVEELKTVANAVGAETVHANRHYEPW----WRKAQGEL 112 Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187 + K +D + L PPG + + YK+YTPF KA++Q + D P Sbjct: 113 AEELELKLYDGNYLFPPGHVTTGSGDPYKIYTPFSKAMLQEMPPRDEVPEPETLSSPGEW 172 Query: 188 VTPSNIPRFFDYPFQ-----AIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGT 242 ++ + P + + + +GE A L + ++V Y + R++P++ T Sbjct: 173 PASDDLGDWNLLPTKPDWAGGLRDFWTVGEDAAHERLD-WWSDEVDKYDDGRNMPSVDET 231 Query: 243 SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVC 302 SQ+SP+L G +SP Q W+R K+ K G ++ ELIWR++ ++++ +P+ Sbjct: 232 SQMSPHLHHGEISPVQIWHRFKD-------KRSDGWKTYEKELIWRDYAQNVICQFPAYP 284 Query: 303 MGKPFIPWTEKIEWNKD------SHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMI 356 W + W L+ W++G TG+PI+DA MRQL GWMHNR+RMI Sbjct: 285 KESYRDGWDADMAWRNPNRGHIIQEELKRWQKGQTGYPIVDAGMRQLWQTGWMHNRVRMI 344 Query: 357 TASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGK 416 ASFL+K LL+DWR GE++F L+D D ASN WQW + TG DS + RI P Q + Sbjct: 345 AASFLIKHLLIDWRHGEKWFWDTLVDADYASNGTNWQWVSGTGVDSNMFSRIMAPLTQSE 404 Query: 417 RFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYA 476 +FD G +IR ++PEL ++P + IH P K D +YP I+ HK+ L Y Sbjct: 405 KFDAAG-YIREYVPELADLPDETIHDPEEHGCKPD---DYPSKIIAHKEGRERALEAYSE 460 Query: 477 AK 478 K Sbjct: 461 FK 462 >gi|147903319|ref|NP_001082139.1| cryptochrome 2a [Xenopus laevis] gi|46249526|gb|AAH68732.1| LOC398246 protein [Xenopus laevis] Length = 568 Score = 364 bits (935), Expect = 2e-98, Method: Composition-based stats. Identities = 126/507 (24%), Positives = 205/507 (40%), Gaps = 40/507 (7%) Query: 1 MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHF 60 M+ ++S + W R LR+ DN AL +A +++ V V+I P + F Sbjct: 1 MEGKPSVS-SVHWFRKGLRLHDNPALLSALRGANS-VRCVYILDPWFAASSSGGVNRWRF 58 Query: 61 IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120 + SL + SL + + + + V++L + E RD Sbjct: 59 LLQSLEDLDTSLRKLNSRLFVVRG----QPADVFPRLFKEWGVSRLTFEYDSEPFGKERD 114 Query: 121 KLLEKRLQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLV-QADLRSLP 178 ++ K + + + L L+ +++ P Q ++ + ++ P Sbjct: 115 AVIMKLAKEGGVEVVVENSHTLYD----LDRIIELNGHSPPLTYKRFQAIISRMEIPRRP 170 Query: 179 VPAIRLT-----------GPVTPSNIPRFFDYPF---QAIDPMFPIGEQNALHILRKFCK 224 P++ +P + F ++P GE AL L + + Sbjct: 171 APSVTRQQMEACRAEIKRNHDETYGVPSLEELGFHRENKGSAIWPGGETEALARLDRHLE 230 Query: 225 EKVYYYVEQRDIPAIQGT----SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFS 280 K + +R + LSPYL G LS + + RL+E + + K S Sbjct: 231 RKAWVANYERPRMNANSLLASPTGLSPYLRFGCLSCKLFYYRLQELYRKVK-KNNPPPLS 289 Query: 281 WLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAM 340 +L+WREF+ P + P +I W+K+ L W +G TGFP IDA M Sbjct: 290 LFGQLLWREFFYTAATNNPKFDQMEG-NPICVQIPWDKNPKALAKWAEGKTGFPWIDAIM 348 Query: 341 RQLNTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTG 399 QL GW+H+ R A FL + DL W G + F LLD D + N G W W S Sbjct: 349 TQLRQEGWIHHLARHAVACFLTRGDLWNSWECGVKVFDELLLDADFSVNAGSWMW-LSCS 407 Query: 400 NDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLD------KNDLS 453 +F + P G+R DP G FIR +LP L P++YI+ P S + K + Sbjct: 408 AFFQQFFHCYCPVGFGRRTDPNGDFIRRYLPVLKAFPSRYIYEPWSAPESVQKQAKCIIG 467 Query: 454 LNYPLPIVDHKKACHHTLNQYYAAKKQ 480 ++YP PIV+H +A + + +Q Sbjct: 468 IDYPKPIVNHAEASSMNIERMKQTYQQ 494 >gi|311247933|ref|XP_003122883.1| PREDICTED: cryptochrome-2-like [Sus scrofa] Length = 594 Score = 364 bits (934), Expect = 2e-98, Method: Composition-based stats. Identities = 123/494 (24%), Positives = 196/494 (39%), Gaps = 31/494 (6%) Query: 10 HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69 + W R LR+ DN AL AA + V V+I P + + F+ SL + Sbjct: 25 SVHWFRKGLRLHDNPALLAAVRGAHC-VRCVYILDPWFAASSSVGINRWRFLLQSLEDLD 83 Query: 70 KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH 129 SL + + + + + VT+L + E RD + K + Sbjct: 84 TSLRKLNSRLFVVRG----QPADVFPALFQEWGVTRLTFEYDSEPFGKERDAAIMKMAKE 139 Query: 130 -RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188 V + + L I+ Q + +ALI + V + ++ Sbjct: 140 AGVEVVTENSHTLYDLDKIIELNGQKPPLTYKRFQALISRMELPKKPVGSVTSQQMESCR 199 Query: 189 TPSNIPRFFDYPFQAIDPM-----------FPIGEQNALHILRKFCKEKVYYYVEQRDIP 237 Y +++ + + GE AL L K + K + +R Sbjct: 200 AEIQENHDETYGVPSLEELGFPTEGLGPAVWQGGETEALARLDKHLERKAWVANYERPRM 259 Query: 238 AIQGT----SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRH 293 + LSPYL G LS R + RL + + + + + S +L+WREF+ Sbjct: 260 NANSLLASPTGLSPYLRFGCLSCRLFYYRLWDLYKKVK-RNSTPPLSLFGQLLWREFFYT 318 Query: 294 LMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRL 353 P + P +I W+++ L W +G TGFP IDA M QL GW+H+ Sbjct: 319 AATNNPRFDRMEG-NPICIQIPWDRNPEALAKWAEGKTGFPWIDAIMTQLRQEGWIHHLA 377 Query: 354 RMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPT 412 R A FL + DL V W G F LLD D + N G W W S +F + P Sbjct: 378 RHAVACFLTRGDLWVSWESGVRVFDELLLDADFSVNAGSWMW-LSCSAFFQQFFHCYCPV 436 Query: 413 IQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLD------KNDLSLNYPLPIVDHKKA 466 G+R DP G +IR +LP+L P++YI+ P + + K + ++YP PIV+H + Sbjct: 437 GFGRRTDPSGDYIRRYLPKLKGFPSRYIYEPWNAPESVQKAAKCIIGVDYPRPIVNHAET 496 Query: 467 CHHTLNQYYAAKKQ 480 + + +Q Sbjct: 497 SRLNIERMKQIYQQ 510 >gi|149202510|ref|ZP_01879482.1| Deoxyribodipyrimidine photolyase [Roseovarius sp. TM1035] gi|149143792|gb|EDM31826.1| Deoxyribodipyrimidine photolyase [Roseovarius sp. TM1035] Length = 473 Score = 364 bits (934), Expect = 2e-98, Method: Composition-based stats. Identities = 156/484 (32%), Positives = 226/484 (46%), Gaps = 27/484 (5%) Query: 5 TAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYAS 64 T ++ +VWLR DLR+ D+ AL AA A VI VFI + A + S Sbjct: 2 TDIAPSIVWLRRDLRLADHPALCAALAGGGA-VIPVFIHDESVEA---LGAAPKWRLGLS 57 Query: 65 LLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLE 124 L + + L+ G + + +++ L + + + ++R Y+ + RDK ++ Sbjct: 58 LASLARDLAACGSRLILRRGA----ALDVLRALVAETGAGAVHWSRLYDPQSIARDKAVK 113 Query: 125 KRLQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRS---LPVP 180 L+ + +S V+ P ++ Y+VY+P +A+ V L + +P P Sbjct: 114 SALREAGVDAQSHPGHVMFEPWTVETKTGGFYRVYSPMWRAVKDRDVAVPLTAPGQIPAP 173 Query: 181 AIRLTGPVTPSNIPRFFDY-PFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAI 239 + Y P +GE A+ L F + Y + R+ PA+ Sbjct: 174 KVWPASDSLDDWQMGAAMYRGADVCLPYQRVGEAAAMERLHAFADGAIAEYQDARNFPAV 233 Query: 240 QGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYP 299 TS LS L+ G +SPRQCW+ + L GA +WL EL+WREF HLM P Sbjct: 234 DATSALSENLTYGEISPRQCWHAGQR----ALHGGAKGAETWLKELVWREFAYHLMYHTP 289 Query: 300 SVCMGKPFIPWTEKIEWNKDSHLLQA--WKQGYTGFPIIDAAMRQLNTIGWMHNRLRMIT 357 + G W + W+ D+ + WKQG TG P +DAAMR++ G MHNR RMI Sbjct: 290 HILSGNWRTDW-DAFPWSTDADHPEVIAWKQGRTGEPFVDAAMREMYVTGKMHNRARMIV 348 Query: 358 ASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKR 417 AS+L K L+ W+IG ++F L D D ASN GWQWAA G D+ PYFR+FNP Q + Sbjct: 349 ASYLTKHLMTHWKIGLDWFAECLTDWDPASNAMGWQWAAGCGPDAAPYFRVFNPETQLDK 408 Query: 418 FDPQGTFIRHWLPELNNVPTQYIHA-----PHSWLDKNDLSLNYPLPIVDHKKACHHTLN 472 FD G + R W+ E P P +W D S+ YP IVD + LN Sbjct: 409 FDRGGAYTRRWIAEGQRTPPATALDYFKAVPRAWQL--DPSMLYPGRIVDLSQGRQRALN 466 Query: 473 QYYA 476 Y A Sbjct: 467 AYEA 470 >gi|45935258|gb|AAS79664.1| mutant cryptochrome 1-1 protein [Pisum sativum] Length = 682 Score = 364 bits (934), Expect = 2e-98, Method: Composition-based stats. Identities = 141/497 (28%), Positives = 230/497 (46%), Gaps = 27/497 (5%) Query: 5 TAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYAS 64 ++ +VW R DLR+ DN AL A V+ VFI PE+ Q+ ++ S Sbjct: 2 SSGGCSIVWFRRDLRVEDNPALAAGVRAG--AVVGVFIWAPEEEGQYYPGRVSRWWLKNS 59 Query: 65 LLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLE 124 L Q+ SL G + + DSI L T++F+N Y+ + RD + Sbjct: 60 LSQLDSSLRNLGTPLVTKRST---DSISSLLEVVKSTGATQIFFNHLYDPLSLVRDHRAK 116 Query: 125 KRL-QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIR 183 + L + +S++ +L P + + Q + + F + + LP P Sbjct: 117 EILTAQGITVRSYNSDLLYEPWDVNDEHGQPFTTFDSFWERCLSMPYDPQAPLLP-PKRI 175 Query: 184 LTGPVT--PSNIPRFFDYPFQAIDPM----FPIGEQNALHILRKFCKEKVYYYVEQRDIP 237 + G V+ PS+ F D ++ + + + G NA L F + Y R Sbjct: 176 IPGDVSRCPSDTLVFEDELEKSSNALLARAWSPGWSNANKALTTFINGPLIEYSVNRRKA 235 Query: 238 AIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFS----WLNELIWREFYRH 293 TS LSP+L +S ++ ++ ++ + V + +L + RE+ R+ Sbjct: 236 DSATTSFLSPHLHFEEVSVKKVFHLVRIKQVFWANEGNKAGEESVNLFLKSIGLREYSRY 295 Query: 294 LMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRL 353 + +P +P + + W D +AW+QG TG+P++DA MR+L GW+H+R+ Sbjct: 296 ISFNHP-YSHERPLLGHLKFFPWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRI 354 Query: 354 RMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTI 413 R++ +SF VK L + WR G +YF LLD DL S+ GWQ+ + T D + RI NP Sbjct: 355 RVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTLPDGREFDRIDNPQF 414 Query: 414 QGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKN------DLSLNYPLPIVDHKKAC 467 +G + DP G ++R WLPEL +PT++IH P + + +L NYPLPIV+ A Sbjct: 415 EGYKCDPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPLPIVEIDAAT 474 Query: 468 ---HHTLNQYYAAKKQS 481 L Q + + S Sbjct: 475 VRLEEALIQMWQLEAAS 491 >gi|288919996|ref|ZP_06414317.1| Deoxyribodipyrimidine photo-lyase [Frankia sp. EUN1f] gi|288348649|gb|EFC82905.1| Deoxyribodipyrimidine photo-lyase [Frankia sp. EUN1f] Length = 472 Score = 364 bits (934), Expect = 2e-98, Method: Composition-based stats. Identities = 148/474 (31%), Positives = 215/474 (45%), Gaps = 19/474 (4%) Query: 13 WLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQKSL 72 WLR DLR+ DN AL AA V+A+F+ R + F+Y L + + L Sbjct: 3 WLRRDLRLDDNPALIAAA--GQGPVLALFVLDEALCR--PAGPVRLAFLYRCLRDLDRRL 58 Query: 73 SQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHRV- 131 + + C D + + + + + + RRD+ + + L Sbjct: 59 AGRL-------CVRAGDPEQVVPAVAGEIGADVVHIAADHGPYGRRRDERVARALLAGGR 111 Query: 132 ICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPS 191 + + + PG ++ Y+V+TPF +A + + P L Sbjct: 112 ELRRTGSAYAVEPGRLVKPDGSPYRVFTPFYRAWKAHGWPEPVAPAPTEPDWLDPASLSG 171 Query: 192 NIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSI 251 P + P GEQ A L F + + Y RD PA TS+LSPYL Sbjct: 172 GSEEIPPDPVLDGVTLPPPGEQAAHDRLHAFLRGPLGDYARHRDEPAADVTSRLSPYLKW 231 Query: 252 GVLSPRQCWNRLKEEFV----DLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPF 307 G + PR + ++ A + +E+ WREFY ++A PS Sbjct: 232 GCIHPRTVLDGVRTATAPSTDGATDGATEAAEKFRSEIAWREFYADVLAANPSSARS-DL 290 Query: 308 IPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLV 367 ++ + +AWK G TG+PI+DA MRQL GW+HNR+RMI ASF+ KDL V Sbjct: 291 SETLARMSYEPPGESFEAWKWGRTGYPIVDAGMRQLLAEGWVHNRVRMIEASFVCKDLHV 350 Query: 368 DWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRH 427 W G +++ +L+DGDLASNN GWQW A TG D+ PYFR+FNP QG+RFDP G +IR Sbjct: 351 HWAHGARWYLERLVDGDLASNNHGWQWTAGTGTDAAPYFRVFNPVSQGRRFDPDGEYIRR 410 Query: 428 WLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481 W+PEL +P + +H P PIVDH L ++ A+ S Sbjct: 411 WVPELRGLPAELVHEPWKCPGGPPNGYP--GPIVDHAVERRDALARHAQARNAS 462 >gi|157131015|ref|XP_001655778.1| DNA photolyase [Aedes aegypti] gi|108871687|gb|EAT35912.1| DNA photolyase [Aedes aegypti] Length = 820 Score = 364 bits (934), Expect = 2e-98, Method: Composition-based stats. Identities = 121/493 (24%), Positives = 193/493 (39%), Gaps = 32/493 (6%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 + W R LR+ DN AL ++ VF+ P + + F+ L + + Sbjct: 47 VHWFRKGLRLHDNPALREGLKDA-VSFRCVFVIDPWFAGSSNVGINKWRFLLQCLEDLDR 105 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH- 129 +L + + + L + T L + E RD + + + Sbjct: 106 NLRKLNSRLFVIRG----QPADALPKLFKEWGTTCLTFEEDPEPFGKVRDHNISEMCKEL 161 Query: 130 RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189 + S L I+ + +A+I ++ + + T Sbjct: 162 GIEVISAVSHTLYKLERIIEKNGGRAPLTYHQFQAIIASMDAPPQPEPAITLDTIANATT 221 Query: 190 PS--------NIPRFFDYPFQAID---PMFPIGEQNALHILRKFCKEKVYYYVEQRDIPA 238 P +P + F+ P++ GE AL L + + K + R Sbjct: 222 PQYEDHDDKYGVPTLEELGFETEGLKPPIWVGGETEALARLERHLERKAWVASFGRPKMT 281 Query: 239 IQGT----SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHL 294 Q + LSPYL G LS R + +L + + IK S +L+WREF+ Sbjct: 282 PQSLLASQTGLSPYLRFGCLSTRLFYYQLTDLYKK--IKKACPPLSLHGQLLWREFFYCA 339 Query: 295 MAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLR 354 P+ P +I W++++ L W G TGFP IDA M QL GW+H+ R Sbjct: 340 ATKNPNFDKM-AGNPICVQIPWDRNAEALAKWASGQTGFPWIDAIMTQLREEGWIHHLAR 398 Query: 355 MITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTI 413 A FL + DL + W G + F LLD D + N G W W S + +F + P Sbjct: 399 HAVACFLTRGDLWISWEEGMKVFEELLLDADWSVNAGMWMW-LSCSSFFQQFFHCYCPVK 457 Query: 414 QGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLD------KNDLSLNYPLPIVDHKKAC 467 G++ DP G +IR +LP L N PT+YIH P + + K + YPLP+V+H A Sbjct: 458 FGRKADPNGDYIRRYLPVLKNFPTRYIHEPWNAPETVQRTAKCIIGKEYPLPMVNHAIAS 517 Query: 468 HHTLNQYYAAKKQ 480 + + +Q Sbjct: 518 RANMERIKQVYQQ 530 >gi|2073148|dbj|BAA19864.1| photolyase/blue-light receptor homolog2 [Mus musculus] Length = 569 Score = 363 bits (933), Expect = 2e-98, Method: Composition-based stats. Identities = 124/493 (25%), Positives = 197/493 (39%), Gaps = 31/493 (6%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 + W R LR+ DN AL AA + V V+I P + + F+ SL + Sbjct: 1 VHWFRKGLRLHDNPALLAAVRGARC-VRCVYILDPWFAASSSVGINRWRFLLQSLEDLDT 59 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH- 129 SL + + + + VT+L + E RD + K + Sbjct: 60 SLRKLNSRLFVVRG----QPADVFPRLFKEWGVTRLTFEYDSEPFGKERDAAIMKMAKEA 115 Query: 130 RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189 V + + L I+ Q + +ALI + ++ V + R+ Sbjct: 116 GVEVVTENSHTLYDLDRIIELNGQKPPLTYKRFQALISRMELPKKPAVAVSSSRMESCRA 175 Query: 190 PSNIPRFFDYPFQAIDPM-----------FPIGEQNALHILRKFCKEKVYYYVEQRDIPA 238 Y +++ + + GE AL L K + K + +R Sbjct: 176 EIQKNHDDTYGVPSLEELGFPTEGLGPAVWQGGETEALARLDKHLERKAWVANYERPRMN 235 Query: 239 IQGT----SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHL 294 + LSPYL G LS R + RL + + + + + S +L+WREF+ Sbjct: 236 ANSLLASPTGLSPYLRFGCLSCRLFYYRLWDLYKKVK-RNSTPPLSLFGQLLWREFFYTA 294 Query: 295 MAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLR 354 P + P +I W+++ L W +G TGFP IDA M QL GW+H+ R Sbjct: 295 ATNNPRFDRVEG-NPICIQIPWDRNPEALAKWAEGKTGFPWIDAIMTQLRQEGWIHHLAR 353 Query: 355 MITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTI 413 A FL + DL V W G F LLD D + N G W W S +F + P Sbjct: 354 HAVACFLTRGDLWVSWESGVRVFDELLLDADFSVNAGSWMW-LSCSAFFQQFFHCYCPVG 412 Query: 414 QGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLD------KNDLSLNYPLPIVDHKKAC 467 G+R DP G +IR +LP+L P++YI+ P + + K + ++YP PIV+H + Sbjct: 413 FGRRTDPSGDYIRRYLPKLKGFPSRYIYEPWNAPESVQKAAKCIIGVDYPRPIVNHAETS 472 Query: 468 HHTLNQYYAAKKQ 480 + + +Q Sbjct: 473 RLNIERMKQIYQQ 485 >gi|296283766|ref|ZP_06861764.1| deoxyribodipyrimidine photolyase [Citromicrobium bathyomarinum JL354] Length = 467 Score = 363 bits (933), Expect = 2e-98, Method: Composition-based stats. Identities = 160/485 (32%), Positives = 235/485 (48%), Gaps = 36/485 (7%) Query: 8 SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67 S +VWLR DLR+ DN ALYAA +I VF+ E+ +++ SL Sbjct: 3 SPQIVWLRRDLRLADNPALYAAAQAG--PIIPVFVLDDERTGDRKYGDASRWWLHHSLES 60 Query: 68 VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127 + +S + + DS+ L + + + NR YE + L+K L Sbjct: 61 LARSFGRHNASLILRRG----DSVNILADLAAKTGASAIHANRHYEPWWRKAQGDLKKAL 116 Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187 + D + L+P G+ + YK+YTPF + + + D P I G Sbjct: 117 PEGCDLELHDGNYLMPLGTATTGSGDPYKIYTPFSRTMRDLMPPRDDLPAP-ETISQPGD 175 Query: 188 VTPSNIPRFFDYPFQAIDP--------MFPIGEQNALHILRKFCKEKVYYYVEQRDIPAI 239 + PS+ D+ +P + IGE A L + + V Y E R++P++ Sbjct: 176 LPPSDD--LADWSLLPTNPDWSTEMAKFWSIGEDAAHERLD-WWADHVGEYDEGRNLPSV 232 Query: 240 QGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYP 299 TSQ+SP+L G +SP Q W+R+K+ K G ++ +ELIWR++ ++++ +P Sbjct: 233 DQTSQMSPHLHWGEISPVQIWHRMKD-------KRSDGWRTYESELIWRDYAQNVLCQFP 285 Query: 300 SVCMGKPFIPWTEKIEWNKD------SHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRL 353 + W L+AW+ G TG+PI+DA MRQL IGWMHNR+ Sbjct: 286 RYPEESYRDAIDDAKLWRNPNRGHVIQEELEAWQYGRTGYPIVDAGMRQLWAIGWMHNRV 345 Query: 354 RMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTI 413 RMI ASFL+K LL+DWR GE +F L+D D ASN WQW A TG DS + RI P Sbjct: 346 RMIAASFLIKHLLIDWRHGERWFWDTLVDADYASNGTNWQWVAGTGVDSNMFPRIMAPLS 405 Query: 414 QGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQ 473 Q ++FD ++IR W+PEL ++P IH P N +YP I+ HK+A L Sbjct: 406 QSEKFDA-ASYIREWVPELADLPDSEIHDPSDKCRPN----DYPAKIIGHKEARERALEA 460 Query: 474 YYAAK 478 Y A K Sbjct: 461 YRAMK 465 >gi|325981909|ref|YP_004294311.1| Deoxyribodipyrimidine photo-lyase [Nitrosomonas sp. AL212] gi|325531428|gb|ADZ26149.1| Deoxyribodipyrimidine photo-lyase [Nitrosomonas sp. AL212] Length = 434 Score = 363 bits (933), Expect = 3e-98, Method: Composition-based stats. Identities = 149/474 (31%), Positives = 213/474 (44%), Gaps = 45/474 (9%) Query: 6 AMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASL 65 + S+ + W R DLR+ DN L A + V+ VFI P + + FIY +L Sbjct: 2 SASLVVFWFRRDLRLDDNVGLSHALASGQ-PVLPVFIFDPSILTGLPENDARVTFIYDTL 60 Query: 66 LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125 ++ L ++ + +SIE D VT ++ N YE RD+ + + Sbjct: 61 QTLRTQLEERYSSSI---ALYYGNSIEVFDQILRLHSVTAVYANHDYEPYARERDEAVCE 117 Query: 126 RLQHR-VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL 184 L+ R V ++ D VL I + Y VYTP+ + + LR+ Sbjct: 118 WLKARSVAFNTYKDHVLFEKNEIAKDSGGPYVVYTPYMHKWRKVQSETTLRAYSTSEKLG 177 Query: 185 TGPVT-PSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS 243 S D F P L + +Y RD PA+ TS Sbjct: 178 NMIKHLHSPNLSLTDIGFVRSAVTIPA------SRLDTKL---LQHYAHDRDFPALTATS 228 Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCM 303 L P+L G +S RQ + + D+ + NELIWREF+ ++ +P Sbjct: 229 LLGPHLRFGTISIRQVFQQALNTSNDI----------FGNELIWREFFSQILWHFPH-TQ 277 Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363 F P ++I+W + + W +G TG+P++DA MRQLN G MHNR+RMITASFL K Sbjct: 278 NSSFKPRYDRIQWRNSAADFERWCKGMTGYPLVDAGMRQLNATGTMHNRVRMITASFLCK 337 Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423 LL+DWR GE YF +LLD D+ASN G WQW A G D+ PYFRIFNP Q K+FD + Sbjct: 338 HLLIDWRWGEAYFAEKLLDYDMASNVGNWQWVAGCGVDAAPYFRIFNPETQIKKFDKNFS 397 Query: 424 FIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477 +I+ W+ + + YP P++ H A L Y A Sbjct: 398 YIQTWVNDWR-------------------TPTYPAPMIKHTDARARCLETYQQA 432 >gi|52695977|pdb|1U3C|A Chain A, Crystal Structure Of The Phr Domain Of Cryptochrome 1 From Arabidopsis Thaliana gi|52695978|pdb|1U3D|A Chain A, Crystal Structure Of The Phr Domain Of Cryptochrome 1 From Arabidopsis Thaliana With Amppnp Bound Length = 509 Score = 363 bits (933), Expect = 3e-98, Method: Composition-based stats. Identities = 138/490 (28%), Positives = 226/490 (46%), Gaps = 25/490 (5%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 +VW R DLR+ DN AL AA VIA+F+ PE+ + ++ SL Q+ Sbjct: 15 IVWFRRDLRVEDNPALAAAVRAG--PVIALFVWAPEEEGHYHPGRVSRWWLKNSLAQLDS 72 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL-QH 129 SL G + + DS+ L +++F+N Y+ + RD + L Sbjct: 73 SLRSLGTCLITKRST---DSVASLLDVVKSTGASQIFFNHLYDPLSLVRDHRAKDVLTAQ 129 Query: 130 RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189 + +SF+ +L P + + + + ++ F + + + LP I Sbjct: 130 GIAVRSFNADLLYEPWEVTDELGRPFSMFAAFWERCLSMPYDPESPLLPPKKIISGDVSK 189 Query: 190 PSNIPRFFDYPFQA-----IDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244 P F+ + + + G N L F + Y + R TS Sbjct: 190 CVADPLVFEDDSEKGSNALLARAWSPGWSNGDKALTTFINGPLLEYSKNRRKADSATTSF 249 Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFS----WLNELIWREFYRHLMAFYPS 300 LSP+L G +S R+ ++ ++ + V + +L + RE+ R++ +P Sbjct: 250 LSPHLHFGEVSVRKVFHLVRIKQVAWANEGNEAGEESVNLFLKSIGLREYSRYISFNHP- 308 Query: 301 VCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASF 360 +P + + W D + +AW+QG TG+P++DA MR+L GW+H+R+R++ +SF Sbjct: 309 YSHERPLLGHLKFFPWAVDENYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSF 368 Query: 361 LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDP 420 VK L + WR G +YF LLD DL S+ GWQ+ T DS + RI NP +G +FDP Sbjct: 369 FVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYITGTLPDSREFDRIDNPQFEGYKFDP 428 Query: 421 QGTFIRHWLPELNNVPTQYIHAPHSWLDKN------DLSLNYPLPIVDHKKACHH---TL 471 G ++R WLPEL+ +PT +IH P + + +L NYPLPIV +A L Sbjct: 429 NGEYVRRWLPELSRLPTDWIHHPWNAPESVLQAAGIELGSNYPLPIVGLDEAKARLHEAL 488 Query: 472 NQYYAAKKQS 481 +Q + + S Sbjct: 489 SQMWQLEAAS 498 >gi|326513908|dbj|BAJ92104.1| predicted protein [Hordeum vulgare subsp. vulgare] Length = 546 Score = 363 bits (933), Expect = 3e-98, Method: Composition-based stats. Identities = 136/500 (27%), Positives = 215/500 (43%), Gaps = 33/500 (6%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISA---------RQSHFI 61 LVW R LR+ DN AL AA S A+V VF+ P R + + F+ Sbjct: 16 LVWFRKGLRVHDNPALDAA-RRSAARVYPVFVLDPRYLRPDPAAPSPGSAHAGVARVRFL 74 Query: 62 YASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDK 121 SLL + L G + DD + + + + KL + E + RDK Sbjct: 75 LESLLDLDARLRCLGSRLLVLRA--RDDVSDAVCAALKDWNIGKLCFESDTEPYALARDK 132 Query: 122 LLEK-RLQHRVICKSFDDSVLLPPGSIL-NHALQMYKVYTPFRKALIQNLVQADLRSLPV 179 + + S L P I+ + + Y F + + Sbjct: 133 RVTDFAAASGIEVFSPVSHTLFDPAEIIEKNGGRPPLTYQSFVATAGEPPKPVMEEYSVL 192 Query: 180 PAIRLTGPVTPSNIPRFFDYPFQAID----PMFPIGEQNALHILRKFCKEKVY--YYVEQ 233 P I TG +P+ + + + P F GE AL +R+ ++K + + + Sbjct: 193 PPIGDTGGYELLPVPKLEELGYGDLSQEYIPPFRGGETEALKRMRESLQDKEWVAKFEKP 252 Query: 234 RDIPAI---QGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREF 290 + P+ T+ LSPYL G LS R ++ +++ + K S +L+WR+F Sbjct: 253 KGDPSAFVKPATTVLSPYLKFGCLSVRYFYHCIQDVYRSAKTHTKP-PVSLAGQLLWRDF 311 Query: 291 YRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMH 350 + + P+ + P ++I W + L AW+ G TG+P IDA M QL GWMH Sbjct: 312 FYTVSLGTPNFDHMEG-NPICKQIPWRESEELFVAWRDGRTGYPWIDAIMIQLRKWGWMH 370 Query: 351 NRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIF 409 + R A FL + DL + W G + F L+D D A NNG W W S + Y RI+ Sbjct: 371 HLARHSVACFLTRGDLYIHWEQGRDVFERLLIDSDWAINNGNWLW-LSCSSFFYQYHRIY 429 Query: 410 NPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWL------DKNDLSLNYPLPIVDH 463 +P GK++DP G +IRH++P L ++P +YI+ P + + + +YP P+VDH Sbjct: 430 SPISFGKKYDPNGDYIRHFIPVLKDMPKEYIYEPWTAPLSVQEKARCIVGKDYPKPVVDH 489 Query: 464 KKACHHTLNQYYAAKKQSLL 483 + A + A + L Sbjct: 490 EAASKGCRRRMGEAYASNRL 509 >gi|260220093|emb|CBA27286.1| Deoxyribodipyrimidine photo-lyase [Curvibacter putative symbiont of Hydra magnipapillata] Length = 534 Score = 363 bits (932), Expect = 3e-98, Method: Composition-based stats. Identities = 152/452 (33%), Positives = 218/452 (48%), Gaps = 18/452 (3%) Query: 4 TTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYA 63 + S LVW R DLR DN AL A D V VF+ + R+ FI Sbjct: 2 QSHFSTGLVWFRRDLRTEDNAALSRALACCDT-VYCVFVYDTAILDKLPRQDRRVEFIQE 60 Query: 64 SLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLL 123 S+ ++ SL + D + + Q + +F R YE V RD + Sbjct: 61 SVTALESSLQALRGHASRTLITLHDVAHSAIPELAKQLQANAVFVARDYEPAAVTRDTAV 120 Query: 124 EK-RLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQN----LVQADLRSLP 178 ++ L D V+ +L + Y V+TP+ +A + LV Sbjct: 121 QQQLLAEGKQLVLVKDQVIFEDREVLTQTGKPYGVFTPYHRAWLARIGSELVPGHDVCRG 180 Query: 179 VPAIRLTGPVTPSNIPRFFDYPFQAIDPM---FPIGEQNALHILRKFCKEKVYYYVEQRD 235 + +P D F+A + G +L+ F ++ Y E R+ Sbjct: 181 HAVLAAAPDALAKPLPSLADLGFEATNLRALGMHGGSAAGEAMLQDFL-GRMDRYSEARN 239 Query: 236 IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLM 295 P+++G S L +L G +S R+ N + GA WL EL WR+FY ++ Sbjct: 240 FPSVKGPSYLGVHLRFGTVSIRKLVNLALKRVR----TGSEGASVWLAELAWRDFYFQIL 295 Query: 296 AFYPSVCMGKPFIPWTEKIEWNKDSH---LLQAWKQGYTGFPIIDAAMRQLNTIGWMHNR 352 A +P V + F P + I W + L +AW +G TG+PI+DAAM QLN G+MHNR Sbjct: 296 ANFPHVAT-QAFKPEYDAIAWEQGEEAEALFEAWCEGKTGYPIVDAAMAQLNQTGYMHNR 354 Query: 353 LRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPT 412 LRM+ SFLVK L +DWR GE+YF +L D DL++NNGGWQW AS+G D+ PYFRIFNP Sbjct: 355 LRMVAGSFLVKHLGLDWRWGEKYFALKLNDFDLSANNGGWQWVASSGCDAQPYFRIFNPV 414 Query: 413 IQGKRFDPQGTFIRHWLPELNNVPTQYIHAPH 444 Q ++FD QG FI+ +LP+L ++ + IHAP Sbjct: 415 TQSEKFDGQGKFIKRYLPQLADLSDKAIHAPW 446 >gi|302851497|ref|XP_002957272.1| Deoxyribodipyrimidine photolyase, class 1 [Volvox carteri f. nagariensis] gi|300257367|gb|EFJ41616.1| Deoxyribodipyrimidine photolyase, class 1 [Volvox carteri f. nagariensis] Length = 914 Score = 363 bits (932), Expect = 3e-98, Method: Composition-based stats. Identities = 139/477 (29%), Positives = 226/477 (47%), Gaps = 23/477 (4%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 +VW R DLR+ DN A A N+ A VI VFI PE+ Q + SL+ + Sbjct: 15 TAVVWFRRDLRVDDNPA-LEAALNAAATVIPVFIWAPEEEGQFQPGRCSRWWTKHSLVDL 73 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128 Q++L+ G + + DS L + R +F+N Y+ + RD ++ L Sbjct: 74 QQALAALGSRLIIRRST---DSTAELLKVVGEVRAEAVFFNHLYDPISLMRDHDCKRGLA 130 Query: 129 HRVICK-SFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187 + +F+ +L P +L+ Q Y + F ++ V A+ Sbjct: 131 AAGVAHRTFNGDMLYEPWEVLDVNKQPYSTFDDFWNSVRAMTVPPPFPMAAPAAMPPVPA 190 Query: 188 VTPSNIPRFFDYPFQAIDPM--------FPIGEQNALHILRKFCKEKVYYYVEQRDIPAI 239 PS + D+ F A + G A+ L +F E+++ + R Sbjct: 191 FVPSLMVSEVDWFFTAEQEASSDQLKFKWKPGVGGAIAELERFVTERLHVFEHDRAKVDR 250 Query: 240 QGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFS---WLNELIWREFYRHLMA 296 TS+LSP++ IG +S R + R+++ + L S +L ++ +RE+ R+L Sbjct: 251 DSTSRLSPWIHIGSISVRYIFYRIRQCQAEWLAAGVDRTRSCDDFLQQVGYREYSRYLSF 310 Query: 297 FYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMI 356 +P + + W D H +AW+QG TG+PI+DAAMRQL + GW HNR R++ Sbjct: 311 HFP-FIHERSLLRHLRACPWRIDQHAFKAWRQGQTGYPIVDAAMRQLWSSGWCHNRARVV 369 Query: 357 TASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGK 416 ASFLVK+LL+ W+ G +++ +D DL + GWQ+ + +D+ P+ + + + + Sbjct: 370 AASFLVKNLLLPWQWGLKHYWDAQIDADLECDALGWQYVSGGMSDAHPFSYMMDLEKEAR 429 Query: 417 RFDPQGTFIRHWLPELNNVPTQYIHAPHS------WLDKNDLSLNYPLPIVDHKKAC 467 RFDP G ++R WLP L+ +PT+YIH P +L NYP PI+ H A Sbjct: 430 RFDPDGEYVRRWLPVLSRLPTEYIHGPWKAPPQVLAAADVELGCNYPAPIISHNDAR 486 >gi|193211374|ref|NP_001123208.1| cryptochrome-2 [Ovis aries] gi|156763811|gb|ABS44876.1| cryptochrome 2 [Ovis aries] Length = 596 Score = 363 bits (932), Expect = 3e-98, Method: Composition-based stats. Identities = 124/494 (25%), Positives = 199/494 (40%), Gaps = 31/494 (6%) Query: 10 HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69 + W R LR+ DN AL AA + V V+I P + + F+ SL + Sbjct: 27 SVHWFRKGLRLHDNPALLAAVRGAHC-VRCVYILDPWFAASSSVGINRWRFLLQSLEDLD 85 Query: 70 KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH 129 +SL + + + + VT+L + E RD + K + Sbjct: 86 RSLRKLNSRLFVVRG----QPADVFPRLFKEWGVTRLTFEYDSEPFGKERDAAIMKMAKE 141 Query: 130 -RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188 V + + L I+ Q + +A+I + V + ++ G Sbjct: 142 AGVEVVTENSHTLYDLDKIIELNGQKPPLTYKRFQAIISRMELPRKPVGSVTSQQMEGCQ 201 Query: 189 TPSNIPRFFDYPFQAIDPM-----------FPIGEQNALHILRKFCKEKVYYYVEQRDIP 237 Y +++ + + GE AL L K + K + +R Sbjct: 202 AEIQESHDETYGVPSLEELGFPTEGLGPAVWRGGETEALARLDKHLERKAWVASYERPRM 261 Query: 238 A----IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRH 293 + + LSPYL G LS R + RL + + + + + S +L+WREF+ Sbjct: 262 NASSLLASPTGLSPYLRFGCLSCRLFYYRLWDLYRKVK-RNSTPPLSLFGQLLWREFFYT 320 Query: 294 LMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRL 353 P + P +I W+++ L W +G TGFP IDA M QL GW+H+ Sbjct: 321 AATNNPRFDRMEG-NPICIQIPWDRNPEALAKWAEGKTGFPWIDAIMAQLRQEGWIHHLA 379 Query: 354 RMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPT 412 R A FL + DL V W G F LLD D + N G W W S +F + P Sbjct: 380 RHAVACFLTRGDLWVSWESGVRVFDELLLDADFSVNAGSWMW-LSCSAFFQQFFHCYCPV 438 Query: 413 IQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLD------KNDLSLNYPLPIVDHKKA 466 G+R DP G +IR +LP+L P++YI+ P + + K + ++YP PIV+H +A Sbjct: 439 GFGRRTDPSGDYIRRYLPKLKGFPSRYIYEPWNAPESIQKAAKCIIGVDYPRPIVNHAEA 498 Query: 467 CHHTLNQYYAAKKQ 480 + + +Q Sbjct: 499 SRLNIERMKQVYQQ 512 >gi|73983386|ref|XP_540761.2| PREDICTED: similar to cryptochrome 2 (photolyase-like) [Canis familiaris] Length = 593 Score = 363 bits (932), Expect = 3e-98, Method: Composition-based stats. Identities = 124/494 (25%), Positives = 194/494 (39%), Gaps = 31/494 (6%) Query: 10 HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69 + W R LR+ DN AL AA + V V+I P + + F+ SL + Sbjct: 24 SVHWFRKGLRLHDNPALLAAVRGARC-VRCVYILDPWFAASSSVGINRWRFLLQSLEDLD 82 Query: 70 KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH 129 SL + + + + VT+L + E RD + K + Sbjct: 83 TSLRKLNSRLFVVRG----QPADVFPRLFKEWGVTRLTFEYDSEPFGKERDAAIMKMAKE 138 Query: 130 -RVICKSFDDSVLLPPGSILNHALQ-MYKVYTPFRKALIQNLVQADL-------RSLPVP 180 V + + L I+ Q Y F+ + + + + Sbjct: 139 AGVEVVTENSHTLYDLDKIIELNGQKPPLTYKRFQAIISRMELPKKPVGSVTSQQMESCR 198 Query: 181 AIRLTGPVTPSNIPRFFDYPF--QAIDPM-FPIGEQNALHILRKFCKEKVYYYVEQRDIP 237 A +P + F + + P + GE AL L K + K + +R Sbjct: 199 ADIQDNHDDTYGVPSLEELGFPTEGLGPAVWQGGETEALARLDKHLERKAWVANYERPRM 258 Query: 238 AIQGT----SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRH 293 + LSPYL G LS R + RL + + + + + S +L+WREF+ Sbjct: 259 NANSLLASPTGLSPYLRFGCLSCRLFYYRLWDLYKKVK-RNSTPPLSLFGQLLWREFFYT 317 Query: 294 LMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRL 353 P + P +I W+++ L W +G TGFP IDA M QL GW+H+ Sbjct: 318 AATNNPRFDRMEG-NPICIQIPWDRNPEALAKWAEGKTGFPWIDAIMTQLRQEGWIHHLA 376 Query: 354 RMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPT 412 R A FL + DL V W G F LLD D + N G W W S +F + P Sbjct: 377 RHAVACFLTRGDLWVSWESGVRVFDELLLDADFSVNAGSWMW-LSCSAFFQQFFHCYCPV 435 Query: 413 IQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLD------KNDLSLNYPLPIVDHKKA 466 G+R DP G +IR +LP L P++YI+ P + + K + ++YP PIV+H + Sbjct: 436 GFGRRTDPSGDYIRRYLPILKGFPSRYIYEPWNAPESIQKAAKCIIGVDYPRPIVNHAET 495 Query: 467 CHHTLNQYYAAKKQ 480 + + +Q Sbjct: 496 SRLNIERMKQIYQQ 509 >gi|87123064|ref|ZP_01078915.1| Deoxyribodipyrimidine photolyase [Synechococcus sp. RS9917] gi|86168784|gb|EAQ70040.1| Deoxyribodipyrimidine photolyase [Synechococcus sp. RS9917] Length = 493 Score = 363 bits (932), Expect = 4e-98, Method: Composition-based stats. Identities = 157/496 (31%), Positives = 221/496 (44%), Gaps = 37/496 (7%) Query: 10 HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQW----RQHGISARQSHFIYASL 65 L W R DLR+ DN L AA A V V + P ++ + F+ SL Sbjct: 6 TLFWHRRDLRLADNTGLQAAVGLGPA-VTGVVVLDPAILSPPPHLPPMAPARLWFLVESL 64 Query: 66 LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125 +++Q+ + G D L + ++R E RD+ + + Sbjct: 65 IELQQRWREAGSRLLV----VAGDPATVLPRLASLLDAPAVVWSRDVEPYARERDRAVAR 120 Query: 126 RLQHRVICKSF-DDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL 184 LQ D +L+ P + Y+VY PF + + +++ ++ P+ + Sbjct: 121 ALQADGRKVLVDWDQLLVNPELLKTGGGDPYRVYGPFLRNWRGQVERSEPSTVASPSGLI 180 Query: 185 TGPVTPSNIPRFFD--------------------YPFQAIDPMFP-IGEQNALHILRKFC 223 + + + F I+ GE A L F Sbjct: 181 DLEPETLALISSGEGELGRLCLEGQRQLEHLRAAHGFAGIELCPCRPGEAAAAEQLATFV 240 Query: 224 KEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPK-SGAFSWL 282 + Y R++P++ GTS LS LS+G LSPRQ W +E + + W Sbjct: 241 AGPLMAYEPDRNVPSVVGTSSLSAALSVGTLSPRQAWCAAQEVKQCVRSDEQLQAITVWE 300 Query: 283 NELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQ 342 EL WREFY+ + +P + G P+ P + W + WK G TG PIIDAAMRQ Sbjct: 301 QELGWREFYQQALFHFPELADG-PYRPQWRRFPWENNDDWFDFWKDGQTGMPIIDAAMRQ 359 Query: 343 LNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDS 402 LN GWMHNR RMI AS+LVKDL+ DWR GE FM +DGDLA+NNGGWQW+AS+G D Sbjct: 360 LNQTGWMHNRCRMIVASYLVKDLICDWRWGERAFMELEVDGDLAANNGGWQWSASSGMDP 419 Query: 403 VPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVD 462 P RIFNP Q +FD +G +IR WLPEL +V T + S YP P+V+ Sbjct: 420 KP-LRIFNPATQASKFDAEGEYIRRWLPELRHVNTNDL---LSGEIPALERRGYPEPLVN 475 Query: 463 HKKACHHTLNQYYAAK 478 HK Y + Sbjct: 476 HKSQQARFKALYATIR 491 >gi|83942471|ref|ZP_00954932.1| deoxyribodipyrimidine photolyase [Sulfitobacter sp. EE-36] gi|83846564|gb|EAP84440.1| deoxyribodipyrimidine photolyase [Sulfitobacter sp. EE-36] Length = 473 Score = 363 bits (931), Expect = 4e-98, Method: Composition-based stats. Identities = 160/483 (33%), Positives = 231/483 (47%), Gaps = 27/483 (5%) Query: 5 TAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYAS 64 + S L+W R DLR++D+ AL AA N+ VI VFI + + A + Sbjct: 2 SDKSPILLWYRRDLRLSDHPALSAAA-NAGRPVIPVFIKDKSV---NALGAAPKWRLGLG 57 Query: 65 LLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLE 124 + + SL + D++E L + + ++++R Y+ + V+RD ++ Sbjct: 58 VGALADSLEGVSSRLILREG----DALEALQALIKETGAGTVYWSRLYDPDSVQRDSKIK 113 Query: 125 KRL-QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRS---LPVP 180 + L + KSF V+ P ++ A YKVYTPF + V+ L + LP P Sbjct: 114 ETLCNDGIEAKSFGGHVMFEPWTVETKAGDCYKVYTPFWNNVKTRDVEPPLSAPSDLPAP 173 Query: 181 -AIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAI 239 + + + + D + +GE+ A L F V Y RDIP Sbjct: 174 ESWPDSDALDGWGLGAAMDRGADVVRRFVCLGEKAAQSRLGAFMAHGVADYKLTRDIPGT 233 Query: 240 QGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYP 299 GTS LS LS+G +SP QCW+ + D K GA ++L EL+WREF HLM P Sbjct: 234 DGTSNLSENLSLGEISPHQCWHAAQRALHD----GKQGAETFLKELVWREFAYHLMHHTP 289 Query: 300 SVCMGKPFIPWTEKIEWNKDS--HLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMIT 357 + + + WN+D ++AWKQG TG P +DAAMR+L G MHNR RMI Sbjct: 290 RMLTDN-WREEWDAFPWNEDERRAEVKAWKQGRTGEPFVDAAMRELYVTGRMHNRGRMIV 348 Query: 358 ASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKR 417 AS+L K L+ WRIG+++F L+D D ASN GWQWAA +G D+ PYFR+FNP Q + Sbjct: 349 ASYLTKHLMCHWRIGQKWFEHCLIDWDPASNAMGWQWAAGSGPDASPYFRVFNPETQLDK 408 Query: 418 FDPQGTFIRHWLPELNNVPTQYIHA-----PHSWLDKNDLSLNYPLPIVDHKKACHHTLN 472 FD + W+ E P + A P SW D +YP I+ + L Sbjct: 409 FDKNRDYASRWIAEGRANPHKDALAFFDAIPRSWPLSAD--DDYPEKIIALDEGRERALE 466 Query: 473 QYY 475 Y Sbjct: 467 TYK 469 >gi|296217987|ref|XP_002755255.1| PREDICTED: cryptochrome-2 [Callithrix jacchus] Length = 593 Score = 363 bits (931), Expect = 4e-98, Method: Composition-based stats. Identities = 124/494 (25%), Positives = 195/494 (39%), Gaps = 31/494 (6%) Query: 10 HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69 + W R LR+ DN AL AA + V V+I P + + F+ SL + Sbjct: 24 SVHWFRKGLRLHDNPALLAAVRGARC-VRCVYILDPWFAASSSVGINRWRFLLQSLEDLD 82 Query: 70 KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH 129 SL + + + + VT+L + E RD + K + Sbjct: 83 TSLRKLNSRLFVVRG----QPADVFPRLFKEWGVTRLTFEYDSEPFGKERDAAIMKMAKE 138 Query: 130 -RVICKSFDDSVLLPPGSILNHALQ-MYKVYTPFRKALIQNLVQADL-------RSLPVP 180 V + + L I+ Q Y F+ + + + + Sbjct: 139 AGVEVVTENSHTLYDLDRIIELNGQKPPLTYKRFQAIISRMELPKKPVGSVTSQQMESCR 198 Query: 181 AIRLTGPVTPSNIPRFFDYPF--QAIDPM-FPIGEQNALHILRKFCKEKVYYYVEQRDIP 237 A +P + F + + P + GE AL L K + K + +R Sbjct: 199 AEIQENHDETYGVPSLEELGFPTEGLGPAVWQGGETEALARLDKHLERKAWVANYERPRM 258 Query: 238 AIQGT----SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRH 293 + LSPYL G LS R + RL + + + + + S +L+WREF+ Sbjct: 259 NANSLLASPTGLSPYLRFGCLSCRLFYYRLWDLYKKVK-RNSTPPLSLFGQLLWREFFYT 317 Query: 294 LMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRL 353 P + P +I W+++ L W +G TGFP IDA M QL GW+H+ Sbjct: 318 AATNNPRFDRMEG-NPICIQIPWDRNPEALAKWAEGKTGFPWIDAIMTQLRQEGWIHHLA 376 Query: 354 RMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPT 412 R A FL + DL V W G F LLD D + N G W W S +F + P Sbjct: 377 RHAVACFLTRGDLWVSWESGVRVFDELLLDADFSVNAGSWMW-LSCSAFFQQFFHCYCPV 435 Query: 413 IQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLD------KNDLSLNYPLPIVDHKKA 466 G+R DP G +IR +LP+L P++YI+ P + + K + ++YP PIV+H + Sbjct: 436 GFGRRTDPSGDYIRRYLPKLKGFPSRYIYEPWNAPESIQKAAKCIIGVDYPRPIVNHAET 495 Query: 467 CHHTLNQYYAAKKQ 480 + + +Q Sbjct: 496 SRLNIERMKQIYQQ 509 >gi|19173768|ref|NP_596896.1| cryptochrome-2 [Rattus norvegicus] gi|81867613|sp|Q923I8|CRY2_RAT RecName: Full=Cryptochrome-2 gi|15072464|gb|AAK61419.1| cryptochrome 2 [Rattus norvegicus] Length = 594 Score = 363 bits (931), Expect = 4e-98, Method: Composition-based stats. Identities = 129/503 (25%), Positives = 198/503 (39%), Gaps = 33/503 (6%) Query: 1 MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHF 60 M A A SVH W R LR+ DN AL AA + V V+I P + + F Sbjct: 16 MGADGASSVH--WFRKGLRLHDNPALLAAVRGARC-VRCVYILDPWFAASSSVGINRWRF 72 Query: 61 IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120 + SL + SL + + + + VT+L + E RD Sbjct: 73 LLQSLEDLDTSLRKLNSRLFVVRG----QPADVFPRLFKEWGVTRLTFEYDSEPFGKERD 128 Query: 121 KLLEKRLQH-RVICKSFDDSVLLPPGSILNHALQ-MYKVYTPFRKALIQNLVQADL---- 174 + K + V + + L I+ Q Y F+ + + + Sbjct: 129 AAIMKMAKEAGVEVVTENSHTLYDLDRIIELNGQKPPLTYKRFQALISRMELPKKPVGAV 188 Query: 175 ---RSLPVPAIRLTGPVTPSNIPRFFDYPF--QAIDPM-FPIGEQNALHILRKFCKEKVY 228 A +P + F + + P + GE AL L K + K + Sbjct: 189 SSQHMENCRAEIQENHDDTYGVPSLEELGFPTEGLGPAVWQGGETEALVRLDKHLERKAW 248 Query: 229 YYVEQRDIPAIQGT----SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNE 284 +R + LSPYL G LS R + RL + + + + + S + Sbjct: 249 VANYERPRMNANSLLASPTGLSPYLRFGCLSCRLFYYRLWDLYRKVK-RNSTPPLSLFGQ 307 Query: 285 LIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLN 344 L+WREF+ P + P +I W+++ L W +G TGFP IDA M QL Sbjct: 308 LLWREFFYTAATNNPRFDRMEG-NPICIQIPWDRNPEALAKWAEGKTGFPWIDAIMTQLR 366 Query: 345 TIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSV 403 GW+H+ R A FL + DL V W G F LLD D + N G W W S Sbjct: 367 QEGWIHHLARHAVACFLTRGDLWVSWESGVRVFDELLLDADFSVNAGSWMW-LSCSAFFQ 425 Query: 404 PYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDK------NDLSLNYP 457 +F + P G+R DP G +IR +LP+L P++YI+ P + + + ++YP Sbjct: 426 QFFHCYCPVGFGRRTDPSGDYIRRYLPKLKGFPSRYIYEPWNAPESVQKAANCIIGVDYP 485 Query: 458 LPIVDHKKACHHTLNQYYAAKKQ 480 PIV+H + + + +Q Sbjct: 486 RPIVNHAETSRLNIERMKQIYQQ 508 >gi|188536100|ref|NP_066940.2| cryptochrome-2 isoform 1 [Homo sapiens] gi|194380960|dbj|BAG64048.1| unnamed protein product [Homo sapiens] Length = 614 Score = 362 bits (930), Expect = 5e-98, Method: Composition-based stats. Identities = 129/501 (25%), Positives = 199/501 (39%), Gaps = 33/501 (6%) Query: 3 ATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIY 62 +A SVH W R LR+ DN AL AA + V V+I P + + F+ Sbjct: 40 TDSASSVH--WFRKGLRLHDNPALLAAVRGARC-VRCVYILDPWFAASSSVGINRWRFLL 96 Query: 63 ASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKL 122 SL + SL + + + + VT+L + E RD Sbjct: 97 QSLEDLDTSLRKLNSRLFVVRG----QPADVFPRLFKEWGVTRLTFEYDSEPFGKERDAA 152 Query: 123 LEKRLQH-RVICKSFDDSVLLPPGSILNHALQ-MYKVYTPFRKALIQNLVQADLRSL--- 177 + K + V + + L I+ Q Y F+ + + + L Sbjct: 153 IMKMAKEAGVEVVTENSHTLYDLDRIIELNGQKPPLTYKRFQAIISRMELPKKPVGLVTS 212 Query: 178 ----PVPAIRLTGPVTPSNIPRFFDYPF--QAIDPM-FPIGEQNALHILRKFCKEKVYYY 230 A +P + F + + P + GE AL L K + K + Sbjct: 213 QQMESCRAEIQENHDETYGVPSLEELGFPTEGLGPAVWQGGETEALARLDKHLERKAWVA 272 Query: 231 VEQRDIPAIQGT----SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELI 286 +R + LSPYL G LS R + RL + + + + + S +L+ Sbjct: 273 NYERPRMNANSLLASPTGLSPYLRFGCLSCRLFYYRLWDLYKKVK-RNSTPPLSLFGQLL 331 Query: 287 WREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTI 346 WREF+ P + P +I W+++ L W +G TGFP IDA M QL Sbjct: 332 WREFFYTAATNNPRFDRMEG-NPICIQIPWDRNPEALAKWAEGKTGFPWIDAIMTQLRQE 390 Query: 347 GWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPY 405 GW+H+ R A FL + DL V W G F LLD D + N G W W S + Sbjct: 391 GWIHHLARHAVACFLTRGDLWVSWESGVRVFDELLLDADFSVNAGSWMW-LSCSAFFQQF 449 Query: 406 FRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLD------KNDLSLNYPLP 459 F + P G+R DP G +IR +LP+L P++YI+ P + + K + ++YP P Sbjct: 450 FHCYCPVGFGRRTDPSGDYIRRYLPKLKAFPSRYIYEPWNAPESIQKAAKCIIGVDYPRP 509 Query: 460 IVDHKKACHHTLNQYYAAKKQ 480 IV+H + + + +Q Sbjct: 510 IVNHAETSRLNIERMKQIYQQ 530 >gi|307611921|ref|NP_001182627.1| cryptochrome 2 [Bombyx mori] gi|306416110|gb|ADM86933.1| cryptochrome 2 [Bombyx mori] gi|306416114|gb|ADM86935.1| cryptochrome 2 [Bombyx mori] Length = 730 Score = 362 bits (930), Expect = 5e-98, Method: Composition-based stats. Identities = 130/505 (25%), Positives = 197/505 (39%), Gaps = 34/505 (6%) Query: 1 MKAT--TAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQS 58 M A T + W R LRI DN AL ++ VFI P + + Sbjct: 24 MSAPRRTPGKHTVHWFRKGLRIHDNPALREGIIDA-VTFRCVFIIDPWFASSSNVGINKW 82 Query: 59 HFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVR 118 F+ L + KSL + + + L + T L + E Sbjct: 83 RFLLQCLEDLDKSLKKLNSRLFVVRG----QPADALPKLFREWGTTALTFEEDPEPYGRV 138 Query: 119 RDKLLEKRLQH-RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSL 177 RD + + + + S L I+ + +ALI ++ + Sbjct: 139 RDHNIISKCREVGITVTSRVSHTLYKLDKIIERNGGKAPLTYHQFQALIASMPPPPPAEV 198 Query: 178 PVPAIRLTGPVTPS--------NIPRFFDYPFQAID---PMFPIGEQNALHILRKFCKEK 226 + L G TP +P + F+ P++ GE AL L + + K Sbjct: 199 TITPQMLNGATTPITDNHDDRFGVPTLEELGFETEGLKPPIWIGGESEALARLERHLERK 258 Query: 227 VYYYVEQRDIPAIQGT----SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWL 282 + R Q + LSPYL G LS R + +L E + +K S Sbjct: 259 AWVASFGRPKMTPQSLLASQTGLSPYLRFGCLSTRLFYYQLTELYK--RVKRVRPPLSLH 316 Query: 283 NELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQ 342 +++WREF+ P+ + P +I W K+ L W G TG+P IDA M Q Sbjct: 317 GQILWREFFYCAATRNPNFDRMEG-NPICVQIPWEKNQDALAKWANGQTGYPWIDAIMIQ 375 Query: 343 LNTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGND 401 L GW+H+ R A FL + DL + W G + F LLD D + N G W W S + Sbjct: 376 LREEGWIHHLSRHAVACFLTRGDLWISWEEGMKVFDELLLDADWSVNAGMWMW-FSCSSF 434 Query: 402 SVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPH------SWLDKNDLSLN 455 +F + P G++ DP G FIR ++P L N+PT+YIH P + + + Sbjct: 435 FQQFFHCYCPVRFGRKTDPNGDFIRKYIPALKNMPTRYIHEPWMAPESVQAAAQCSIGRD 494 Query: 456 YPLPIVDHKKACHHTLNQYYAAKKQ 480 YP+P+VDH KA + + Q Sbjct: 495 YPMPMVDHTKASQINIERIKQVYAQ 519 >gi|332836250|ref|XP_001160595.2| PREDICTED: cryptochrome-2 isoform 1 [Pan troglodytes] Length = 614 Score = 362 bits (930), Expect = 7e-98, Method: Composition-based stats. Identities = 124/494 (25%), Positives = 195/494 (39%), Gaps = 31/494 (6%) Query: 10 HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69 + W R LR+ DN AL AA + V V+I P + + F+ SL + Sbjct: 45 SVHWFRKGLRLHDNPALLAAVRGARC-VRCVYILDPWFAASSSVGINRWRFLLQSLEDLD 103 Query: 70 KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH 129 SL + + + + VT+L + E RD + K + Sbjct: 104 TSLRKLNSRLFVVRG----QPADVFPRLFKEWGVTRLTFEYDSEPFGKERDAAIMKMAKE 159 Query: 130 -RVICKSFDDSVLLPPGSILNHALQ-MYKVYTPFRKALIQNLVQADL-------RSLPVP 180 V + + L I+ Q Y F+ + + + + Sbjct: 160 AGVEVVTENSHTLYDLDRIIELNGQKPPLTYKRFQAIISRMELPKKPVGSVTSQQMESCR 219 Query: 181 AIRLTGPVTPSNIPRFFDYPF--QAIDPM-FPIGEQNALHILRKFCKEKVYYYVEQRDIP 237 A +P + F + + P + GE AL L K + K + +R Sbjct: 220 AEIQENHDETYGVPSLEELGFPTEGLGPAVWQGGETEALARLDKHLERKAWVANYERPRM 279 Query: 238 AIQGT----SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRH 293 + LSPYL G LS R + RL + + + + + S +L+WREF+ Sbjct: 280 NANSLLASPTGLSPYLRFGCLSCRLFYYRLWDLYKKVK-RNSTPPLSLFGQLLWREFFYT 338 Query: 294 LMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRL 353 P + P +I W+++ L W +G TGFP IDA M QL GW+H+ Sbjct: 339 AATNNPRFDRMEG-NPICIQIPWDRNPEALAKWAEGKTGFPWIDAIMTQLRQEGWIHHLA 397 Query: 354 RMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPT 412 R A FL + DL V W G F LLD D + N G W W S +F + P Sbjct: 398 RHAVACFLTRGDLWVSWESGVRVFDELLLDADFSVNAGSWMW-LSCSAFFQQFFHCYCPV 456 Query: 413 IQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLD------KNDLSLNYPLPIVDHKKA 466 G+R DP G +IR +LP+L P++YI+ P + + K + ++YP PIV+H + Sbjct: 457 GFGRRTDPSGDYIRRYLPKLKAFPSRYIYEPWNAPESIQKAAKCIIGVDYPRPIVNHAET 516 Query: 467 CHHTLNQYYAAKKQ 480 + + +Q Sbjct: 517 SRLNIERMKQIYQQ 530 >gi|302745152|gb|ADL62679.1| cryptochrome 1a [Phreatichthys andruzzii] Length = 623 Score = 362 bits (929), Expect = 7e-98, Method: Composition-based stats. Identities = 120/494 (24%), Positives = 194/494 (39%), Gaps = 31/494 (6%) Query: 10 HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69 + W R LR+ DN +L + + V V+I P + + F+ L + Sbjct: 5 TVHWFRKGLRLHDNPSLRDSIQGAHT-VRCVYILDPWFAGSSNVGISRWRFLLQCLEDLD 63 Query: 70 KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH 129 SL + + D + +T+L Y E RD ++K Sbjct: 64 ASLRKLNSRLFVIRGQPTD----VFPRLFKEWNITRLSYEYDSEPFGKERDAAIKKLANE 119 Query: 130 RVICKSFD-DSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188 + L I+ + + LI + + + + A + Sbjct: 120 AGVEVIVRISHTLYDLDKIIELNGGQSPLTYKRFQTLISRMEAVETPAETITAEVMGTCT 179 Query: 189 TPSN--------IPRFFDYPFQA---IDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIP 237 TP + +P + F ++P GE AL L + + K + +R Sbjct: 180 TPVSDDHDEKFGVPSLEELGFDTEGLSSAVWPGGETEALTRLERHLERKAWVANFERPRM 239 Query: 238 AIQGT----SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRH 293 + LSPYL G LS + + +L + + + K S S +L+WREF+ Sbjct: 240 NANSLLASPTGLSPYLRFGCLSCQLFYFKLTDLYRKVK-KNSSPPLSLYGQLLWREFFYT 298 Query: 294 LMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRL 353 P + P +I W+K+ L W +G TGFP IDA M QL GW+H+ Sbjct: 299 TATNNPRFDKMEG-NPICVQIPWDKNPEALAKWAEGRTGFPWIDAIMTQLRQEGWIHHLA 357 Query: 354 RMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPT 412 R A FL + DL + W G + F LLD D + N G W W S + +F + P Sbjct: 358 RHAVACFLTRGDLWISWEEGMKVFEELLLDADWSVNAGSWMW-LSCSSFFQQFFHCYCPV 416 Query: 413 IQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLD------KNDLSLNYPLPIVDHKKA 466 G+R DP G +IR +LP L P +YI+ P + + K + ++YP P+V H +A Sbjct: 417 SFGRRTDPNGDYIRRYLPVLRGFPAKYIYDPWTAPESVQKAAKCIIGVHYPKPMVHHAEA 476 Query: 467 CHHTLNQYYAAKKQ 480 + + +Q Sbjct: 477 SRLNIERMKQIYQQ 490 >gi|118572252|sp|Q49AN0|CRY2_HUMAN RecName: Full=Cryptochrome-2 gi|27469701|gb|AAH41814.1| Cryptochrome 2 (photolyase-like) [Homo sapiens] gi|119588435|gb|EAW68029.1| cryptochrome 2 (photolyase-like), isoform CRA_a [Homo sapiens] gi|119588436|gb|EAW68030.1| cryptochrome 2 (photolyase-like), isoform CRA_a [Homo sapiens] gi|121647012|gb|ABM64210.1| photolyase-like cryptochrome 2 [Homo sapiens] gi|167996599|gb|ACA14134.1| growth-inhibiting protein 37 [Homo sapiens] gi|168267486|dbj|BAG09799.1| cryptochrome-2 [synthetic construct] gi|325463641|gb|ADZ15591.1| cryptochrome 2 (photolyase-like) [synthetic construct] Length = 593 Score = 362 bits (929), Expect = 7e-98, Method: Composition-based stats. Identities = 129/501 (25%), Positives = 199/501 (39%), Gaps = 33/501 (6%) Query: 3 ATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIY 62 +A SVH W R LR+ DN AL AA + V V+I P + + F+ Sbjct: 19 TDSASSVH--WFRKGLRLHDNPALLAAVRGARC-VRCVYILDPWFAASSSVGINRWRFLL 75 Query: 63 ASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKL 122 SL + SL + + + + VT+L + E RD Sbjct: 76 QSLEDLDTSLRKLNSRLFVVRG----QPADVFPRLFKEWGVTRLTFEYDSEPFGKERDAA 131 Query: 123 LEKRLQH-RVICKSFDDSVLLPPGSILNHALQ-MYKVYTPFRKALIQNLVQADLRSL--- 177 + K + V + + L I+ Q Y F+ + + + L Sbjct: 132 IMKMAKEAGVEVVTENSHTLYDLDRIIELNGQKPPLTYKRFQAIISRMELPKKPVGLVTS 191 Query: 178 ----PVPAIRLTGPVTPSNIPRFFDYPF--QAIDPM-FPIGEQNALHILRKFCKEKVYYY 230 A +P + F + + P + GE AL L K + K + Sbjct: 192 QQMESCRAEIQENHDETYGVPSLEELGFPTEGLGPAVWQGGETEALARLDKHLERKAWVA 251 Query: 231 VEQRDIPAIQGT----SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELI 286 +R + LSPYL G LS R + RL + + + + + S +L+ Sbjct: 252 NYERPRMNANSLLASPTGLSPYLRFGCLSCRLFYYRLWDLYKKVK-RNSTPPLSLFGQLL 310 Query: 287 WREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTI 346 WREF+ P + P +I W+++ L W +G TGFP IDA M QL Sbjct: 311 WREFFYTAATNNPRFDRMEG-NPICIQIPWDRNPEALAKWAEGKTGFPWIDAIMTQLRQE 369 Query: 347 GWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPY 405 GW+H+ R A FL + DL V W G F LLD D + N G W W S + Sbjct: 370 GWIHHLARHAVACFLTRGDLWVSWESGVRVFDELLLDADFSVNAGSWMW-LSCSAFFQQF 428 Query: 406 FRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLD------KNDLSLNYPLP 459 F + P G+R DP G +IR +LP+L P++YI+ P + + K + ++YP P Sbjct: 429 FHCYCPVGFGRRTDPSGDYIRRYLPKLKAFPSRYIYEPWNAPESIQKAAKCIIGVDYPRP 488 Query: 460 IVDHKKACHHTLNQYYAAKKQ 480 IV+H + + + +Q Sbjct: 489 IVNHAETSRLNIERMKQIYQQ 509 >gi|301773864|ref|XP_002922356.1| PREDICTED: cryptochrome-2-like, partial [Ailuropoda melanoleuca] Length = 581 Score = 362 bits (929), Expect = 8e-98, Method: Composition-based stats. Identities = 125/494 (25%), Positives = 194/494 (39%), Gaps = 31/494 (6%) Query: 10 HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69 + W R LR+ DN AL AA + V V+I P + + F+ SL + Sbjct: 12 SVHWFRKGLRLHDNPALLAAVRGARC-VRCVYILDPWFAASSSVGINRWRFLLQSLEDLD 70 Query: 70 KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH 129 SL + + D + VT+L + E RD + K + Sbjct: 71 TSLRKLNSRLFVVRGQPTD----VFPRLFKEWGVTRLTFEYDSEPFGKERDAAIMKMAKE 126 Query: 130 -RVICKSFDDSVLLPPGSILNHALQ-MYKVYTPFRKALIQNLVQADL-------RSLPVP 180 V + + L I+ Q Y F+ + + + + Sbjct: 127 AGVEVVTENSHTLYDLDKIIELNGQKPPLTYKRFQAIISRMELPKKPVGSVTSQQMESCR 186 Query: 181 AIRLTGPVTPSNIPRFFDYPF--QAIDPM-FPIGEQNALHILRKFCKEKVYYYVEQRDIP 237 A +P + F + + P + GE AL L K + K + +R Sbjct: 187 ADIQESHDDTYGVPSLEELGFPTEGLGPAVWQGGETEALARLDKHLERKAWVANYERPRM 246 Query: 238 AIQGT----SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRH 293 + LSPYL G LS R + RL + + + + + S +L+WREF+ Sbjct: 247 NANSLLASPTGLSPYLRFGCLSCRLFYYRLWDLYKKVK-RNSTPPLSLFGQLLWREFFYT 305 Query: 294 LMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRL 353 P + P +I W+++ L W +G TGFP IDA M QL GW+H+ Sbjct: 306 AATNNPRFDRMEG-NPICIQIPWDRNPEALAKWAEGKTGFPWIDAIMTQLRQEGWIHHLA 364 Query: 354 RMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPT 412 R A FL + DL V W G F LLD D + N G W W S +F + P Sbjct: 365 RHAVACFLTRGDLWVSWESGVRVFDELLLDADFSVNAGSWMW-LSCSAFFQQFFHCYCPV 423 Query: 413 IQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLD------KNDLSLNYPLPIVDHKKA 466 G+R DP G +IR +LP L P++YI+ P + + K + ++YP PIV+H + Sbjct: 424 GFGRRTDPSGDYIRRYLPILKGFPSRYIYEPWNAPESIQKAAKCIIGVDYPRPIVNHAET 483 Query: 467 CHHTLNQYYAAKKQ 480 + + +Q Sbjct: 484 SRLNIERMKQIYQQ 497 >gi|3327130|dbj|BAA31633.1| KIAA0658 protein [Homo sapiens] Length = 589 Score = 362 bits (929), Expect = 8e-98, Method: Composition-based stats. Identities = 129/501 (25%), Positives = 199/501 (39%), Gaps = 33/501 (6%) Query: 3 ATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIY 62 +A SVH W R LR+ DN AL AA + V V+I P + + F+ Sbjct: 15 TDSASSVH--WFRKGLRLHDNPALLAAVRGARC-VRCVYILDPWFAASSSVGINRWRFLL 71 Query: 63 ASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKL 122 SL + SL + + + + VT+L + E RD Sbjct: 72 QSLEDLDTSLRKLNSRLFVVRG----QPADVFPRLFKEWGVTRLTFEYDSEPFGKERDAA 127 Query: 123 LEKRLQH-RVICKSFDDSVLLPPGSILNHALQ-MYKVYTPFRKALIQNLVQADLRSL--- 177 + K + V + + L I+ Q Y F+ + + + L Sbjct: 128 IMKMAKEAGVEVVTENSHTLYDLDRIIELNGQKPPLTYKRFQAIISRMELPKKPVGLVTS 187 Query: 178 ----PVPAIRLTGPVTPSNIPRFFDYPF--QAIDPM-FPIGEQNALHILRKFCKEKVYYY 230 A +P + F + + P + GE AL L K + K + Sbjct: 188 QQMESCRAEIQENHDETYGVPSLEELGFPTEGLGPAVWQGGETEALARLDKHLERKAWVA 247 Query: 231 VEQRDIPAIQGT----SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELI 286 +R + LSPYL G LS R + RL + + + + + S +L+ Sbjct: 248 NYERPRMNANSLLASPTGLSPYLRFGCLSCRLFYYRLWDLYKKVK-RNSTPPLSLFGQLL 306 Query: 287 WREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTI 346 WREF+ P + P +I W+++ L W +G TGFP IDA M QL Sbjct: 307 WREFFYTAATNNPRFDRMEG-NPICIQIPWDRNPEALAKWAEGKTGFPWIDAIMTQLRQE 365 Query: 347 GWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPY 405 GW+H+ R A FL + DL V W G F LLD D + N G W W S + Sbjct: 366 GWIHHLARHAVACFLTRGDLWVSWESGVRVFDELLLDADFSVNAGSWMW-LSCSAFFQQF 424 Query: 406 FRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLD------KNDLSLNYPLP 459 F + P G+R DP G +IR +LP+L P++YI+ P + + K + ++YP P Sbjct: 425 FHCYCPVGFGRRTDPSGDYIRRYLPKLKAFPSRYIYEPWNAPESIQKAAKCIIGVDYPRP 484 Query: 460 IVDHKKACHHTLNQYYAAKKQ 480 IV+H + + + +Q Sbjct: 485 IVNHAETSRLNIERMKQIYQQ 505 >gi|77963974|gb|ABB13328.1| cryptochrome 1a [Hordeum vulgare subsp. vulgare] gi|77963976|gb|ABB13329.1| cryptochrome 1a [Hordeum vulgare subsp. vulgare] gi|77963978|gb|ABB13330.1| cryptochrome 1a [Hordeum vulgare subsp. vulgare] Length = 694 Score = 362 bits (929), Expect = 8e-98, Method: Composition-based stats. Identities = 139/497 (27%), Positives = 227/497 (45%), Gaps = 22/497 (4%) Query: 3 ATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIY 62 A A + +VW R DLR+ DN A AA + +V+ ++ PE+ + ++ Sbjct: 11 AGEAATRTVVWFRRDLRVEDNPA-LAAAARTAGEVVPAYVWAPEEDGPYYPGRVSRWWLS 69 Query: 63 ASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKL 122 SL + SL + G + S D++ L T LF+N Y+ + RD Sbjct: 70 QSLKHLDASLRRLGASRLVTRRST--DTVAALLELVRSTGATHLFFNHLYDPLSLVRDHR 127 Query: 123 LEKRLQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPA 181 +++ L I +SF+ +L P +L+ + ++T F + + P Sbjct: 128 VKQVLAAEGISVQSFNSDLLYEPWEVLDDHGSPFTMFTSFWNKCLCMVDPPAPMLPPKRI 187 Query: 182 IRLTGPVTPSNIPRFFDYPFQAIDPM----FPIGEQNALHILRKFCKEKVYYYVEQRDIP 237 S+ F D + + + + G QNA F + Y R Sbjct: 188 NSGDLTRCSSDDLIFEDDSERGSNALLARAWSPGWQNADKAFTAFINGPLIDYSVNRKKA 247 Query: 238 AIQGTSQLSPYLSIGVLSPRQCWNRLKEEF----VDLLIKPKSGAFSWLNELIWREFYRH 293 TS LSPYL G LS R+ +++++ + + + G +L + RE+ R+ Sbjct: 248 DSANTSLLSPYLHFGELSVRKVFHQVRMKQLTWSNESNRDGEEGCSLFLRSIGLREYSRY 307 Query: 294 LMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRL 353 L +P KP + W + + W+QG TG+P++DA MR+L GW+H+R+ Sbjct: 308 LAFNHP-CSHEKPLLAHLRFFPWVVNEVYFKVWRQGRTGYPLVDAGMRELWATGWLHDRI 366 Query: 354 RMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTI 413 R++ +SF VK L + WR G +YF LLD DL S+ GWQ+ + + D RI NP Sbjct: 367 RVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGSLPDGRELDRIDNPQF 426 Query: 414 QGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKN------DLSLNYPLPIVDHKKAC 467 +G +FDP G ++R WLPEL +PT++IH P + +L NYPLPIV+ +A Sbjct: 427 EGYKFDPYGEYVRRWLPELARLPTEWIHHPWDAPESVLQAAGIELGSNYPLPIVELDEAK 486 Query: 468 HH---TLNQYYAAKKQS 481 L++ + + S Sbjct: 487 SRLQDALSEMWELEAAS 503 >gi|161138114|gb|ABX58028.1| cryptochrome 1a [Triticum aestivum] Length = 698 Score = 362 bits (929), Expect = 8e-98, Method: Composition-based stats. Identities = 141/508 (27%), Positives = 236/508 (46%), Gaps = 32/508 (6%) Query: 1 MKATTAMS-------VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGI 53 M A+ +MS +VW R DLR+ DN A AA + +V+ ++ PE+ + Sbjct: 1 MSASPSMSGGAGERTRTVVWFRRDLRVEDNPA-LAAAARTAGEVVPAYVWAPEEDGPYYP 59 Query: 54 SARQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYE 113 ++ SL + SL + G + S D++ L T LF+N Y+ Sbjct: 60 GRVSRWWLSQSLKHLDASLRRLGATRLVTRRST--DTVAALLELVRSTGATHLFFNHLYD 117 Query: 114 INEVRRDKLLEKRL-QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQA 172 + RD +++ L + +SF+ +L P +L+ + ++TPF + + Sbjct: 118 PLSLVRDHRVKQVLGAEGITVQSFNSDLLYEPWEVLDDHGCPFTMFTPFWNTCLCMVDPP 177 Query: 173 DLRSLP--VPAIRLTGPVTPSNIPRFFDYPFQAIDPM----FPIGEQNALHILRKFCKEK 226 P + + L+ + ++ F D + + + + G QNA F Sbjct: 178 APMLPPKRINSGELSRCCSSDDLI-FEDESERGSNALLARAWSPGWQNADKAFTAFINGP 236 Query: 227 VYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEF----VDLLIKPKSGAFSWL 282 + Y R TS LSPYL G LS R+ +++++ + + + G +L Sbjct: 237 LIDYSVNRKKADSANTSLLSPYLHFGELSVRKVFHQVRMKQLTWSNESNGDGEEGCSLFL 296 Query: 283 NELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQ 342 + RE+ R+L +P KP + W + + W+QG TG+P++DA MR+ Sbjct: 297 RSIGLREYSRYLAFNHP-CSHEKPLLAHLRFFPWVVNEVYFKVWRQGRTGYPLVDAGMRE 355 Query: 343 LNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDS 402 L GW+H+R+R++ +SF VK L + WR G +YF LLD DL S+ GWQ+ + + D Sbjct: 356 LWATGWLHDRIRVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGSLPDG 415 Query: 403 VPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKN------DLSLNY 456 RI NP +G +FDP G ++R WLPEL +PT++IH P + +L NY Sbjct: 416 RELDRIDNPQFEGYKFDPCGEYVRRWLPELARLPTEWIHHPWDAPESVLQAAGIELGSNY 475 Query: 457 PLPIVDHKKACHH---TLNQYYAAKKQS 481 PLPIV+ +A L++ + + S Sbjct: 476 PLPIVELDEAKSRLQDALSEMWELEAAS 503 >gi|281348773|gb|EFB24357.1| hypothetical protein PANDA_011308 [Ailuropoda melanoleuca] Length = 580 Score = 362 bits (928), Expect = 9e-98, Method: Composition-based stats. Identities = 125/494 (25%), Positives = 194/494 (39%), Gaps = 31/494 (6%) Query: 10 HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69 + W R LR+ DN AL AA + V V+I P + + F+ SL + Sbjct: 12 SVHWFRKGLRLHDNPALLAAVRGARC-VRCVYILDPWFAASSSVGINRWRFLLQSLEDLD 70 Query: 70 KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH 129 SL + + D + VT+L + E RD + K + Sbjct: 71 TSLRKLNSRLFVVRGQPTD----VFPRLFKEWGVTRLTFEYDSEPFGKERDAAIMKMAKE 126 Query: 130 -RVICKSFDDSVLLPPGSILNHALQ-MYKVYTPFRKALIQNLVQADL-------RSLPVP 180 V + + L I+ Q Y F+ + + + + Sbjct: 127 AGVEVVTENSHTLYDLDKIIELNGQKPPLTYKRFQAIISRMELPKKPVGSVTSQQMESCR 186 Query: 181 AIRLTGPVTPSNIPRFFDYPF--QAIDPM-FPIGEQNALHILRKFCKEKVYYYVEQRDIP 237 A +P + F + + P + GE AL L K + K + +R Sbjct: 187 ADIQESHDDTYGVPSLEELGFPTEGLGPAVWQGGETEALARLDKHLERKAWVANYERPRM 246 Query: 238 AIQGT----SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRH 293 + LSPYL G LS R + RL + + + + + S +L+WREF+ Sbjct: 247 NANSLLASPTGLSPYLRFGCLSCRLFYYRLWDLYKKVK-RNSTPPLSLFGQLLWREFFYT 305 Query: 294 LMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRL 353 P + P +I W+++ L W +G TGFP IDA M QL GW+H+ Sbjct: 306 AATNNPRFDRMEG-NPICIQIPWDRNPEALAKWAEGKTGFPWIDAIMTQLRQEGWIHHLA 364 Query: 354 RMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPT 412 R A FL + DL V W G F LLD D + N G W W S +F + P Sbjct: 365 RHAVACFLTRGDLWVSWESGVRVFDELLLDADFSVNAGSWMW-LSCSAFFQQFFHCYCPV 423 Query: 413 IQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLD------KNDLSLNYPLPIVDHKKA 466 G+R DP G +IR +LP L P++YI+ P + + K + ++YP PIV+H + Sbjct: 424 GFGRRTDPSGDYIRRYLPILKGFPSRYIYEPWNAPESIQKAAKCIIGVDYPRPIVNHAET 483 Query: 467 CHHTLNQYYAAKKQ 480 + + +Q Sbjct: 484 SRLNIERMKQIYQQ 497 >gi|149196503|ref|ZP_01873557.1| deoxyribodipyrimidine photolyase-class I [Lentisphaera araneosa HTCC2155] gi|149140183|gb|EDM28582.1| deoxyribodipyrimidine photolyase-class I [Lentisphaera araneosa HTCC2155] Length = 429 Score = 362 bits (928), Expect = 1e-97, Method: Composition-based stats. Identities = 150/473 (31%), Positives = 225/473 (47%), Gaps = 47/473 (9%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQ-HGISARQSHFIYASLLQ 67 ++ W R DLR+ DN LYAA + KV +FI + ++ + + FI+ + + Sbjct: 2 INYFWFRRDLRLEDNCGLYAALEAGE-KVRPIFIFDTKILKKLTSKNDPRVSFIHQKIKE 60 Query: 68 VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127 + + KG + + ++ + + LQ + ++ NR YE + RD +E+ L Sbjct: 61 LDHQIKAKGGSGIWVYYGDVKETWKEI----LQSQTGDVYCNRDYEPAAIDRDHEVEQIL 116 Query: 128 Q-HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 + H SF D V+ +L Y VYTP+RKA L+ P Sbjct: 117 RSHGQNLHSFKDQVIFEEDEVLKKDGTPYTVYTPYRKAWELKFSPEMLKPFPSDLKNNYD 176 Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246 IP + F+ E+ A + + + Y RD PA+ TS LS Sbjct: 177 TSPSKAIPSLEEMGFE---------EKKAHEGNKNLNTQLLLNYSVDRDFPALNATSLLS 227 Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP 306 L G +S R + ++L+ELIWREF+ ++ +P + Sbjct: 228 VQLRFGAISIRHLAKQALNL-----------DSTYLHELIWREFFMMILYHFPHSAKQE- 275 Query: 307 FIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLL 366 F ++ W D + W G TG+P++DA MR+LN G+MHNR+RM+TASFLVK LL Sbjct: 276 FKEQYSRVPWRYDHEDFKRWCFGKTGYPLVDAGMRELNETGYMHNRVRMVTASFLVKHLL 335 Query: 367 VDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIR 426 +DWR GEEYF +L+D D+++N G WQWAA G D+ PYFR+FNPT Q +RFD Q +I+ Sbjct: 336 IDWRWGEEYFARKLMDYDMSANVGNWQWAAGCGCDAAPYFRVFNPTAQKERFDKQEEYIK 395 Query: 427 HWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479 W+PE N + YP P++DHK A + Y A K Sbjct: 396 KWIPEYNTML-------------------YPEPMIDHKFARERAIETYKKALK 429 >gi|126695647|ref|YP_001090533.1| putative DNA photolyase [Prochlorococcus marinus str. MIT 9301] gi|126542690|gb|ABO16932.1| putative DNA photolyase [Prochlorococcus marinus str. MIT 9301] Length = 478 Score = 361 bits (927), Expect = 1e-97, Method: Composition-based stats. Identities = 163/484 (33%), Positives = 239/484 (49%), Gaps = 29/484 (5%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 L W R DLRI DN++L A S+A + + +I ++ ++ F+ SL ++ Sbjct: 7 LFWHRKDLRIFDNQSLIKAFSLSNA-ITSTYIFDKNYPHDFNANS-RAWFLGNSLQELGN 64 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130 + + G + D + + + +F+N+ E E+ RD ++K L+ + Sbjct: 65 NWKKMGSRLIMEEG----DPVLIIPQLAKKIDAKFVFWNKSIEPYEINRDLKIKKNLEEQ 120 Query: 131 VI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLV---QADLRSLPVPAIRLTG 186 I D +L+ P I + + Y VY PF K L + D + + Sbjct: 121 NIQVIETWDHLLIEPLKIFSGNNKPYSVYGPFYKNLKSKMNLLGPYDQDKVVFQFKDIDN 180 Query: 187 PVTPSNIPRFFDYPFQAI--DPMFPI--------GEQNALHILRKFCKEK-VYYYVEQRD 235 + + D + + FP GE A IL F EK +Y Y RD Sbjct: 181 KLKENKTINSSDSVLEKFIKNIKFPGSNICPCKPGENAAETILENFINEKKIYSYDSARD 240 Query: 236 IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIK-PKSGAFSWLNELIWREFYRHL 294 P+ GTS LS L G +S R+ WN D + +W EL+WREFY+H Sbjct: 241 FPSHNGTSFLSASLRFGTISIRKIWNATLNLNSDCANRVNYLSIETWQKELVWREFYQHC 300 Query: 295 MAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLR 354 + +P + G P+ + W ++ Q W G TG PI+DAAMRQLN+ GWMHNR R Sbjct: 301 LFHFPELEKG-PYRKKWDHFPWQNNNEWFQHWSNGETGVPIVDAAMRQLNSTGWMHNRCR 359 Query: 355 MITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQ 414 MI ASFLVKDL+ +W++GE+ FM L+DGDLA+NNGGWQW+AS+G D P RIFNP Q Sbjct: 360 MIVASFLVKDLICNWQMGEKKFMETLVDGDLAANNGGWQWSASSGMDPKP-LRIFNPYTQ 418 Query: 415 GKRFDPQGTFIRHWLPELNNVPT-QYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQ 473 K+FDP +I++W+PEL+ V + ++ S L+KN NY PIV+H + Sbjct: 419 AKKFDPICEYIKYWIPELSKVSNSELLNGEISNLEKN----NYSSPIVNHNIQQRLFKSL 474 Query: 474 YYAA 477 Y Sbjct: 475 YAEI 478 >gi|55251266|emb|CAH69047.1| cryptochrome 1a [Danio rerio] gi|141796163|gb|AAI34839.1| Cry1a protein [Danio rerio] gi|190337408|gb|AAI63354.1| Cryptochrome 1a [Danio rerio] Length = 619 Score = 361 bits (927), Expect = 1e-97, Method: Composition-based stats. Identities = 118/494 (23%), Positives = 190/494 (38%), Gaps = 31/494 (6%) Query: 10 HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69 + W R LR+ DN +L + + + V V+I P + + F+ L + Sbjct: 5 TVHWFRKGLRLHDNPSLRDSILGAHS-VRCVYILDPWFAGSSNVGISRWRFLLQCLEDLD 63 Query: 70 KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH 129 SL + + D + + +L Y E RD ++K Sbjct: 64 ASLRKLNSRLFVIRGQPTD----VFPRLFKEWNINRLSYEYDSEPFGKERDAAIKKLANE 119 Query: 130 RVICKSFD-DSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSL--------PVP 180 + L I+ + + LI + + + P Sbjct: 120 AGVEVIVRISHTLYDLDKIIELNGGQSPLTYKRFQTLISRMEAVETPAETITAEVMGPCT 179 Query: 181 AIRLTGPVTPSNIPRFFDYPFQA---IDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIP 237 +P + F ++P GE AL L + + K + +R Sbjct: 180 TPLSDDHDEKFGVPSLEELGFDTEGLSSAVWPGGETEALTRLERHLERKAWVANFERPRM 239 Query: 238 AIQGT----SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRH 293 + LSPYL G LS R + +L + + + K S S +L+WREF+ Sbjct: 240 NANSLLASPTGLSPYLRFGCLSCRLFYFKLTDLYRKVK-KNSSPPLSLYGQLLWREFFYT 298 Query: 294 LMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRL 353 P + P +I W+K+ L W +G TGFP IDA M QL GW+H+ Sbjct: 299 AATNNPRFDKMEG-NPICVQIPWDKNPEALAKWAEGRTGFPWIDAIMTQLRQEGWIHHLA 357 Query: 354 RMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPT 412 R A FL + DL + W G + F LLD D + N G W W S + +F + P Sbjct: 358 RHAVACFLTRGDLWISWEEGMKVFEELLLDADWSVNAGSWMW-LSCSSFFQQFFHCYCPV 416 Query: 413 IQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLD------KNDLSLNYPLPIVDHKKA 466 G+R DP G +IR +LP L P +YI+ P + + K + ++YP+P+V H +A Sbjct: 417 SFGRRTDPNGDYIRRYLPVLRGFPAKYIYDPWNAPESVQKAAKCIIGVHYPMPMVHHAEA 476 Query: 467 CHHTLNQYYAAKKQ 480 + + +Q Sbjct: 477 SRLNIERMKQIYQQ 490 >gi|297688842|ref|XP_002821877.1| PREDICTED: cryptochrome-2-like [Pongo abelii] Length = 614 Score = 361 bits (927), Expect = 1e-97, Method: Composition-based stats. Identities = 124/494 (25%), Positives = 195/494 (39%), Gaps = 31/494 (6%) Query: 10 HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69 + W R LR+ DN AL AA + V V+I P + + F+ SL + Sbjct: 45 SVHWFRKGLRLHDNPALLAAVRGARC-VRCVYILDPWFAASSSVGINRWRFLLQSLEDLD 103 Query: 70 KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH 129 SL + + + + VT+L + E RD + K + Sbjct: 104 TSLRKLNSRLFVVRG----QPADVFPRLFKEWGVTRLTFEYDSEPFGKERDAAIMKMAKE 159 Query: 130 -RVICKSFDDSVLLPPGSILNHALQ-MYKVYTPFRKALIQNLVQADL-------RSLPVP 180 V + + L I+ Q Y F+ + + + + Sbjct: 160 AGVEVVTENSHTLYDLDRIIELNGQKPPLTYKRFQAIISRMELPKKPVGSVTSQQMESCR 219 Query: 181 AIRLTGPVTPSNIPRFFDYPF--QAIDPM-FPIGEQNALHILRKFCKEKVYYYVEQRDIP 237 A +P + F + + P + GE AL L K + K + +R Sbjct: 220 AEIQENHDETYGVPSLEELGFPTEGLGPAVWQGGETEALARLDKHLERKAWVANYERPRM 279 Query: 238 AIQGT----SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRH 293 + LSPYL G LS R + RL + + + + + S +L+WREF+ Sbjct: 280 NANSLLASPTGLSPYLRFGCLSCRLFYYRLWDLYKKVK-RNSTPPLSLFGQLLWREFFYT 338 Query: 294 LMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRL 353 P + P +I W+++ L W +G TGFP IDA M QL GW+H+ Sbjct: 339 AATNNPRFDRMEG-NPICIQIPWDRNPEALAKWAEGKTGFPWIDAIMTQLRQEGWIHHLA 397 Query: 354 RMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPT 412 R A FL + DL V W G F LLD D + N G W W S +F + P Sbjct: 398 RHAVACFLTRGDLWVSWESGVRVFDELLLDADFSVNAGSWMW-LSCSAFFQQFFHCYCPV 456 Query: 413 IQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLD------KNDLSLNYPLPIVDHKKA 466 G+R DP G +IR +LP+L P++YI+ P + + K + ++YP PIV+H + Sbjct: 457 GFGRRTDPSGDYIRRYLPKLKAFPSRYIYEPWNAPESIQKAAKCIIGVDYPRPIVNHAET 516 Query: 467 CHHTLNQYYAAKKQ 480 + + +Q Sbjct: 517 SRLNIERMKQIYQQ 530 >gi|302755656|ref|XP_002961252.1| hypothetical protein SELMODRAFT_75166 [Selaginella moellendorffii] gi|300172191|gb|EFJ38791.1| hypothetical protein SELMODRAFT_75166 [Selaginella moellendorffii] Length = 494 Score = 361 bits (927), Expect = 1e-97, Method: Composition-based stats. Identities = 134/485 (27%), Positives = 222/485 (45%), Gaps = 26/485 (5%) Query: 6 AMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASL 65 S +VW R DLR+ DN A + V+ +FI E+ + ++ SL Sbjct: 2 GSSTTIVWFRRDLRVEDNP--ALAAASKAGAVVPLFIWCAEEEGEFRPGRVSRWWLKQSL 59 Query: 66 LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125 + + SL++ G + + S+ L + T++FYN Y+ + RD ++ Sbjct: 60 MHLNSSLAKLGCPLLMQK--SRGSSLNALLQIARDTKATQVFYNHLYDPVSLIRDHHVKH 117 Query: 126 RL-QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL 184 L Q+ + ++F+ +L P + + Y + F + + + D LP + Sbjct: 118 GLSQYGITVQTFNADLLYEPWELFDARGNPYTHFQLFWQRYLGMDHEPDGPLLPPKRLSP 177 Query: 185 TGPV------TPSNIPRFFDYPFQAIDPM----FPIGEQNALHILRKFCKEKVYYYVEQR 234 P+ D ++ + M + G NA L F + Y + R Sbjct: 178 PAEPGLGHLGLPAEELGLEDDFEKSSNAMLARTWTPGWSNANKALDAFLAGPLADYGDNR 237 Query: 235 DIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEF----VDLLIKPKSGAFSWLNELIWREF 290 TS LSP+L G LS R+ ++ ++ + D + A +L L +RE+ Sbjct: 238 GKVDGGTTSMLSPHLHYGELSIRKVFHAVRSKQLLWITDGRQPAERSASLFLRALGYREY 297 Query: 291 YRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMH 350 R+L +P + + W D +AW+QG TG+P++DA MR+L GW+H Sbjct: 298 SRYLCFHFP-FTHERSLLGHLRHFPWRVDEGFFKAWRQGRTGYPLVDAGMRELWATGWLH 356 Query: 351 NRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFN 410 NR+R+I +SF VK L + WR G +YF LLD DL S+ GWQ+ + + D R+ Sbjct: 357 NRIRVIVSSFCVKFLQLPWRWGMKYFWDTLLDADLESDILGWQYISGSLPDGHELDRMEI 416 Query: 411 PTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSW------LDKNDLSLNYPLPIVDHK 464 P ++G+RFDP G ++R WLPEL+ +PT++IH P + +L NYP P+V+ Sbjct: 417 PHVEGRRFDPDGNYVRKWLPELSRLPTEWIHEPWNAPPSVLCAAGIELGCNYPRPVVEIA 476 Query: 465 KACHH 469 A Sbjct: 477 AARER 481 >gi|254476074|ref|ZP_05089460.1| deoxyribodipyrimidine photolyase [Ruegeria sp. R11] gi|214030317|gb|EEB71152.1| deoxyribodipyrimidine photolyase [Ruegeria sp. R11] Length = 478 Score = 361 bits (927), Expect = 1e-97, Method: Composition-based stats. Identities = 152/482 (31%), Positives = 238/482 (49%), Gaps = 27/482 (5%) Query: 6 AMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASL 65 A + + W+R DLR++DN AL AA +S A V+ VFI + + A + L Sbjct: 7 ANAPVIWWIRRDLRLSDNAALTAAV-DSGAPVLPVFIFDS---QDEDLGAAPRFRLGLGL 62 Query: 66 LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125 + + L + G + S +++ L + + + R Y+ RD L+++ Sbjct: 63 EHLAQRLERLGSRLILRRGS----ALQVLQDLLKETGAQAVHWTRAYDPASRARDTLIKE 118 Query: 126 RLQ-HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSL-PVPAIR 183 L+ V S+ ++L P ++ MY+VYTPF +A+ V L + +PA Sbjct: 119 TLKSQGVAAHSYSGNLLFEPWTVETKTGGMYRVYTPFWRAVRGRDVPGLLVAPGTIPAPE 178 Query: 184 LTGPVTPSNIPRF---FDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ 240 + + + +GE+ A L +F + + Y + RD+PA+ Sbjct: 179 QWPNSDQLDTWKLAAAMRRGAPVLAAHCRVGEEAAQDRLDEFIETGIARYQDLRDLPAVD 238 Query: 241 GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPS 300 GTS LS L+ G +SP++ W+R + + + +GA ++L E++WREF HLM P Sbjct: 239 GTSGLSENLAWGEISPQRMWHR----GAEAMAQGAAGAETFLKEVVWREFAYHLMFHTPH 294 Query: 301 VCMGKPFIPWTEKIEWNKDSHLLQA--WKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITA 358 + K + + W+++ + WKQG TG+ +DAAMR+L G MHNR RMI A Sbjct: 295 ILT-KSWREEWQSFAWSENEDTPEVLAWKQGRTGYRFVDAAMRELYVTGKMHNRARMIVA 353 Query: 359 SFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRF 418 SFL K +L WRIG+++F L+D D ASN GWQW A +G D+ P+FR+FNP Q +F Sbjct: 354 SFLTKHMLTHWRIGQKWFEHCLVDWDPASNAMGWQWVAGSGPDAAPFFRVFNPDGQLDKF 413 Query: 419 DPQGTFIRHWLPELNNVPTQYIHA-----PHSWLDKNDLSLNYPLPIVDHKKACHHTLNQ 473 DP+G + W+ E N P A P SW D++ P PI+D K L Sbjct: 414 DPKGRYQAQWIAEGNPKPPDTARAFFTACPKSWQLSADMAR--PRPILDLKAGRERALEA 471 Query: 474 YY 475 Y+ Sbjct: 472 YH 473 >gi|311743511|ref|ZP_07717317.1| deoxyribodipyrimidine photo-lyase [Aeromicrobium marinum DSM 15272] gi|311312641|gb|EFQ82552.1| deoxyribodipyrimidine photo-lyase [Aeromicrobium marinum DSM 15272] Length = 463 Score = 361 bits (927), Expect = 1e-97, Method: Composition-based stats. Identities = 160/474 (33%), Positives = 233/474 (49%), Gaps = 29/474 (6%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M ++W R DLR+ DN AL AA V+ + + W G R + F L Sbjct: 17 MGTSVMWFRADLRLHDNPALRAAVEAGPDGVVPLVVLDDHLWG-PGAGVRTACFA-RLLA 74 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 + + + +V D + + + + RRD +E+ Sbjct: 75 EFDERIGGLHVV--------HGDPVAEVVRVARAVDAGTVHVAAAHTPYGARRDAAVERA 126 Query: 127 LQ-HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185 L H V + + PG + Y+VYTPF +A + + P PA+R Sbjct: 127 LADHDVALVRTGSAYAVSPGRVTKPDGTPYRVYTPFHRAWSAHGWR-----APAPAVRSV 181 Query: 186 GPVTPSN-IPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244 + P R + + P+GE+ A R + KE+V Y + RD+P + TS+ Sbjct: 182 PWLRPGGRTHRIPEVAVPEGVTLPPLGEEAARRRWRDW-KEQVTQYDDVRDLPGVDRTSR 240 Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304 +S +L G + PR DL G S++ E+ +REFY ++ P G Sbjct: 241 MSVHLKWGTIHPRTLL-------ADLDGHDSDGVRSYVREIAFREFYADVLHHRPDSAHG 293 Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364 + P ++E+++ L AW+ G TG+PI+DA MRQL GWMHNR+RMI ASFLVKD Sbjct: 294 Y-YNPALARMEYDRPGESLDAWRTGTTGYPIVDAGMRQLAAEGWMHNRVRMIVASFLVKD 352 Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424 L V+W G +FM +L DGDLASN GWQW A G D+ PY+R+FNPT QGK+FDP GT+ Sbjct: 353 LHVEWTHGAAHFMDRLADGDLASNQHGWQWVAGCGTDASPYYRVFNPTTQGKKFDPDGTY 412 Query: 425 IRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478 +R W+PEL +VP +++H P + D YP PIVDH + L +Y A + Sbjct: 413 VRRWVPELRDVPDRFVHEPWTAPTPPD---GYPAPIVDHAEERREALRRYEAVR 463 >gi|116267987|ref|NP_001070765.1| cryptochrome 1a isoform 1 [Danio rerio] gi|115528160|gb|AAI24763.1| Cryptochrome 1a [Danio rerio] Length = 619 Score = 361 bits (927), Expect = 1e-97, Method: Composition-based stats. Identities = 118/494 (23%), Positives = 190/494 (38%), Gaps = 31/494 (6%) Query: 10 HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69 + W R LR+ DN +L + + + V V+I P + + F+ L + Sbjct: 5 TVHWFRKGLRLHDNPSLRDSILGAHS-VRCVYILDPWFAGSSNVGISRWRFLLQCLEDLD 63 Query: 70 KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH 129 SL + + D + + +L Y E RD ++K Sbjct: 64 ASLRKLNSRLFVIRGQPTD----VFPRLFKEWNINRLSYEYDSEPFGKERDAAIKKLANE 119 Query: 130 RVICKSFD-DSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSL--------PVP 180 + L I+ + + LI + + + P Sbjct: 120 AGVEVIVRISHTLYDLDKIIELNGGQSPLTYKRFQTLISRMEAVETPAETITAEVMGPCT 179 Query: 181 AIRLTGPVTPSNIPRFFDYPFQA---IDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIP 237 +P + F ++P GE AL L + + K + +R Sbjct: 180 TPLSDDHDEKFGVPSLEELGFDTEGLSSAVWPGGETEALTRLERHLERKAWVANFERPRM 239 Query: 238 AIQGT----SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRH 293 + LSPYL G LS R + +L + + + K S S +L+WREF+ Sbjct: 240 NANSLLASPTGLSPYLRFGCLSCRLFYFKLTDLYRKVK-KNSSPPLSLYGQLLWREFFYT 298 Query: 294 LMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRL 353 P + P +I W+K+ L W +G TGFP IDA M QL GW+H+ Sbjct: 299 AATNNPRFDKMEG-NPICVQIPWDKNPEALAKWAEGRTGFPWIDAIMTQLRQEGWIHHLA 357 Query: 354 RMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPT 412 R A FL + DL + W G + F LLD D + N G W W S + +F + P Sbjct: 358 RHAVACFLTRGDLWISWEEGMKVFEELLLDADWSVNAGSWMW-LSCSSFFQQFFHCYCPV 416 Query: 413 IQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLD------KNDLSLNYPLPIVDHKKA 466 G+R DP G +IR +LP L P +YI+ P + + K + ++YP+P+V H +A Sbjct: 417 SFGRRTDPNGDYIRRYLPVLRGFPAKYIYDPWNAPESVQKAAKCIIGVHYPMPMVHHAEA 476 Query: 467 CHHTLNQYYAAKKQ 480 + + +Q Sbjct: 477 SRLNIERMKQIYQQ 490 >gi|4325368|gb|AAD17364.1| Arabidopsis thaliana flavin-type blue-light photoreceptor (SW:Q43125) (Pfam: PF00875, Score=765.2, E=2.6e-226, N=1) Length = 702 Score = 361 bits (927), Expect = 1e-97, Method: Composition-based stats. Identities = 135/486 (27%), Positives = 218/486 (44%), Gaps = 31/486 (6%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 +VW R DLR+ DN AL AA VIA+F+ PE+ + ++ SL Q+ Sbjct: 15 IVWFRRDLRVEDNPALAAAVRAG--PVIALFVWAPEEEGHYHPGRVSRWWLKNSLAQLDS 72 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL-QH 129 SL G + + DS+ L +++F+N Y+ + RD + L Sbjct: 73 SLRSLGTCLITKRST---DSVASLLDVVKSTGASQIFFNHLYDPLSLVRDHRAKDVLTAQ 129 Query: 130 RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189 + +SF+ +L P + + + + ++ F + + + LP I Sbjct: 130 GIAVRSFNADLLYEPWEVTDELGRPFSMFAAFWERCLSMPYDPESPLLPPKKIISGDVSK 189 Query: 190 PSNIPRFFDYPFQA-----IDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244 P F+ + + + G N L F + Y + R TS Sbjct: 190 CVADPLVFEDDSEKGSNALLARAWSPGWSNGDKALTTFINGPLLEYSKNRRKADSATTSF 249 Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304 LSP+L G + + + +L + RE+ R++ +P Sbjct: 250 LSPHLHFGEV----------AWANEGNEAGEESVNLFLKSIGLREYSRYISFNHP-YSHE 298 Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364 +P + + W D + +AW+QG TG+P++DA MR+L GW+H+R+R++ +SF VK Sbjct: 299 RPLLGHLKFFPWAVDENYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFVKV 358 Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424 L + WR G +YF LLD DL S+ GWQ+ T DS + RI NP +G +FDP G + Sbjct: 359 LQLPWRWGMKYFWDTLLDADLESDALGWQYITGTLPDSREFDRIDNPQFEGYKFDPNGEY 418 Query: 425 IRHWLPELNNVPTQYIHAPHSWLDKN------DLSLNYPLPIVDHKKACHH---TLNQYY 475 +R WLPEL+ +PT +IH P + + +L NYPLPIV +A L+Q + Sbjct: 419 VRRWLPELSRLPTDWIHHPWNAPESVLQAAGIELGSNYPLPIVGLDEAKARLHEALSQMW 478 Query: 476 AAKKQS 481 + S Sbjct: 479 QLEAAS 484 >gi|158255956|dbj|BAF83949.1| unnamed protein product [Homo sapiens] Length = 593 Score = 361 bits (926), Expect = 2e-97, Method: Composition-based stats. Identities = 129/501 (25%), Positives = 199/501 (39%), Gaps = 33/501 (6%) Query: 3 ATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIY 62 +A SVH W R LR+ DN AL AA + V V+I P + + F+ Sbjct: 19 TDSASSVH--WFRKGLRLHDNPALLAAVRGARC-VRCVYILDPWFAASSSVGINRWRFLL 75 Query: 63 ASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKL 122 SL + SL + + + + VT+L + E RD Sbjct: 76 QSLEDLDTSLRKLNSRLFVVRG----QPADVFPRLFKEWGVTRLTFEYDSEPFGKERDAA 131 Query: 123 LEKRLQH-RVICKSFDDSVLLPPGSILNHALQ-MYKVYTPFRKALIQNLVQADLRSL--- 177 + K + V + + L I+ Q Y F+ + + + L Sbjct: 132 IMKMAKEAGVEVVTENSHTLYDLDRIIELNGQKPPLTYKRFQAIISRMELPKKPVGLVTS 191 Query: 178 ----PVPAIRLTGPVTPSNIPRFFDYPF--QAIDPM-FPIGEQNALHILRKFCKEKVYYY 230 A +P + F + + P + GE AL L K + K + Sbjct: 192 QQMESCRAEIQENHDETYGVPSLEELGFPTEGLGPAVWQGGETEALARLDKHLERKAWVA 251 Query: 231 VEQRDIPAIQGT----SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELI 286 +R + LSPYL G LS R + RL + + + + + S +L+ Sbjct: 252 NYERPRMNANSLLASPTGLSPYLRFGCLSCRLFYYRLWDLY-KRVKRNSTPPLSLFGQLL 310 Query: 287 WREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTI 346 WREF+ P + P +I W+++ L W +G TGFP IDA M QL Sbjct: 311 WREFFYTAATNNPRFDRMEG-NPICIQIPWDRNPEALAKWAEGKTGFPWIDAIMTQLRQE 369 Query: 347 GWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPY 405 GW+H+ R A FL + DL V W G F LLD D + N G W W S + Sbjct: 370 GWIHHLARHAVACFLTRGDLWVSWESGVRVFDELLLDADFSVNAGSWMW-LSCSAFFQQF 428 Query: 406 FRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLD------KNDLSLNYPLP 459 F + P G+R DP G +IR +LP+L P++YI+ P + + K + ++YP P Sbjct: 429 FHCYCPVGFGRRTDPSGDYIRRYLPKLKAFPSRYIYEPWNAPESIQKAAKCIIGVDYPRP 488 Query: 460 IVDHKKACHHTLNQYYAAKKQ 480 IV+H + + + +Q Sbjct: 489 IVNHAETSRLNIERMKQIYQQ 509 >gi|90415238|ref|ZP_01223172.1| putative photolyase [marine gamma proteobacterium HTCC2207] gi|90332561|gb|EAS47731.1| putative photolyase [marine gamma proteobacterium HTCC2207] Length = 445 Score = 361 bits (926), Expect = 2e-97, Method: Composition-based stats. Identities = 135/454 (29%), Positives = 221/454 (48%), Gaps = 22/454 (4%) Query: 41 FIATPEQWRQHGISARQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQ 100 +I + + +++ +L + KSL K +F D++ L Sbjct: 2 YIFDQSNTQDWTLGGASRWWLHHALQSLDKSLDGKLNIF-------SGDALAILSELSAS 54 Query: 101 QRVTKLFYNRQYEINEVRRDKLLEKRLQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYT 159 +++NR YE + RD ++ RL+ + +SF+ S+L P +L YKV+T Sbjct: 55 MSAKAVYWNRCYEPQSIERDANIKTRLKEAGLDVQSFNGSLLWEPWQVLKKDGTPYKVFT 114 Query: 160 PF-RKALIQNLVQADLRSLP--VPAIRLTGPVTPSNIPRFFDYPF-QAIDPMFPIGEQNA 215 P+ R+ +Q + +P + ++ +T ++ + + + + I E A Sbjct: 115 PYYRRGCLQKVAPRQPLPVPKTLDLVKADNSLTVEDLSLLPAIDWDKKLHGDWDISEDGA 174 Query: 216 LHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPK 275 L F + Y E R+ P + S+LSPY G +S LI + Sbjct: 175 KDRLDDFVFNGIQDYREGRNFPNKKNVSRLSPYFHFGQMSVNT--AWYAANDAAALIDNE 232 Query: 276 SGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHL-LQAWKQGYTGFP 334 S ++L+EL WREF +L+ +P + W K++ L+AW++G TG+P Sbjct: 233 SNLDTFLSELGWREFSYYLLYHFPKLPTDN-LQQRFNVFPWAKNTDAELKAWQKGKTGYP 291 Query: 335 IIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQW 394 ++DA MR+L G+MHNR+RM+ SF+VK+LL+ W GE +F L+D DLA+N+ WQW Sbjct: 292 LVDAGMRELYGTGYMHNRVRMVVGSFMVKNLLIHWHSGERWFWDCLVDADLAANSASWQW 351 Query: 395 AASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPH------SWLD 448 A G D+ P+FRIFNP Q ++FD QG +IR +PEL +P +YIHAP Sbjct: 352 IAGCGADAAPFFRIFNPITQSEKFDKQGDYIRRHVPELAEMPAKYIHAPWLAPADVLAAA 411 Query: 449 KNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQSL 482 ++ +YP PI+D K++ L + K L Sbjct: 412 GVEIGTDYPAPIIDIKESRERALAAFKMTKNDVL 445 >gi|158291667|ref|XP_313179.3| AGAP004261-PA [Anopheles gambiae str. PEST] gi|157017656|gb|EAA44753.3| AGAP004261-PA [Anopheles gambiae str. PEST] Length = 961 Score = 361 bits (926), Expect = 2e-97, Method: Composition-based stats. Identities = 118/494 (23%), Positives = 188/494 (38%), Gaps = 32/494 (6%) Query: 10 HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69 + W R LR+ DN AL + VFI P + + F+ L + Sbjct: 6 TVHWFRKGLRLHDNPALREGLRGARTF-RCVFIIDPWFAGSSNVGINKWRFLLQCLDDLD 64 Query: 70 KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH 129 ++L + + + L + T L + E RD + + + Sbjct: 65 RNLRKLNSRLFVIRG----QPADALPKLFKEWGTTCLTFEEDPEPFGRVRDHNISEMCKE 120 Query: 130 -RVICKSFDDSVLLPPGSILNHALQMYKV-YTPFRKALIQNLVQADLRSL-------PVP 180 + S L I+ + Y F+ + + Sbjct: 121 LGIEVISAASHTLYNLERIIEKNGGRAPLTYHQFQAIIASMDAPPQPEAAITLDVIGNAN 180 Query: 181 AIRLTGPVTPSNIPRFFDYPFQAID---PMFPIGEQNALHILRKFCKEKVYYYVEQRDIP 237 + +P + F+ P++ GE AL L + + K + R Sbjct: 181 TPQYDDHDDKYGVPTLEELGFETEALRPPVWIGGETEALARLERHLERKAWVASFGRPKM 240 Query: 238 AIQGT----SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRH 293 Q + LSPYL G LS R + +L + + IK S +L+WREF+ Sbjct: 241 TPQSLLASQTGLSPYLRFGCLSTRLFYYQLTDLYKK--IKKACPPLSLHGQLLWREFFYC 298 Query: 294 LMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRL 353 P+ P +I W++++ L W G TGFP IDA M QL GW+H+ Sbjct: 299 AATKNPTFDKM-AGNPICVQIPWDRNAEALAKWASGQTGFPWIDAIMTQLREEGWIHHLA 357 Query: 354 RMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPT 412 R A FL + DL + W G + F LLD D + N G W W S + +F + P Sbjct: 358 RHAVACFLTRGDLWISWEEGMKVFEELLLDADWSVNAGMWMW-LSCSSFFQQFFHCYCPV 416 Query: 413 IQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLD------KNDLSLNYPLPIVDHKKA 466 G++ DP G +IR +LP L N PT++IH P + + K + +YPLP+V+H A Sbjct: 417 KFGRKADPNGDYIRRYLPVLKNFPTRFIHEPWNASESVQRAAKCLIGKDYPLPMVNHAIA 476 Query: 467 CHHTLNQYYAAKKQ 480 + + + Sbjct: 477 SRANMERIKQVYQH 490 >gi|110638357|ref|YP_678566.1| deoxyribodipyrimidine photolyase [Cytophaga hutchinsonii ATCC 33406] gi|110281038|gb|ABG59224.1| deoxyribodipyrimidine photolyase (photoreactivating enzyme) [Cytophaga hutchinsonii ATCC 33406] Length = 433 Score = 361 bits (926), Expect = 2e-97, Method: Composition-based stats. Identities = 148/474 (31%), Positives = 220/474 (46%), Gaps = 49/474 (10%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQ-HGISARQSHFIYASLLQ 67 V + W R DLR+TDN L+ A S V+ VFI + + FI+ ++ Sbjct: 4 VVVFWFRRDLRLTDNAGLFQAL-TSGYAVLPVFIFDINILNALEHKNDARVEFIHDTIQS 62 Query: 68 VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127 ++ L + + + + E + + V ++ N YE ++RD + Sbjct: 63 LKNELQKIHSDMEVYHATP----AEAFEQLVKKYTVKAIYTNTDYEPAAIKRDNEISDWA 118 Query: 128 -QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 Q ++ KSF D V+ IL Y+VYTP++ ++ L + + P Sbjct: 119 AQQQIAFKSFKDQVIFEKNEILTDTGAPYRVYTPYKNKWLKKLTENPVTHSPSEKHTDAF 178 Query: 187 P-VTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ-GTSQ 244 + I F P L LRK +E Y + RD P ++ GTS Sbjct: 179 LRMEAKPIVTLKQLGFTPSSIQIPP-----LETLRKTIQE----YDKTRDYPYLEHGTSL 229 Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304 L + G +S R+ ++K +WL+ELIWREF+ L+ +P V Sbjct: 230 LGIHFRFGTISIRE-----------KVVKALPLNATWLSELIWREFFMQLLFHFPHVVT- 277 Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364 + F ++EW + W G TG+P++DA MR+LNT G MHNR+RM+ ASFL K Sbjct: 278 ESFQSKFNRLEWRYSQADFEKWCTGKTGYPLVDAGMRELNTTGHMHNRVRMVVASFLTKH 337 Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424 L +DWR GE YF +LLD DL++NNG WQWAA TG D+ PYFRIFNP Q ++FDP + Sbjct: 338 LFIDWRWGEAYFAQKLLDYDLSANNGNWQWAAGTGADAQPYFRIFNPISQQEKFDPDFIY 397 Query: 425 IRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478 I+ W+PE + +Y PI++HKKA + K Sbjct: 398 IKKWVPEFG-------------------TSSYIEPIIEHKKATERAKLLFSVLK 432 >gi|94498268|ref|ZP_01304828.1| Deoxyribodipyrimidine photolyase [Sphingomonas sp. SKA58] gi|94422270|gb|EAT07311.1| Deoxyribodipyrimidine photolyase [Sphingomonas sp. SKA58] Length = 458 Score = 361 bits (926), Expect = 2e-97, Method: Composition-based stats. Identities = 149/482 (30%), Positives = 234/482 (48%), Gaps = 38/482 (7%) Query: 8 SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67 + L+W R DLR++D AL AA S+ V+ V++ + RQ + +++ SL Sbjct: 3 APVLLWFRQDLRLSDQAALIAAA--SEGPVVPVYVLDDDTPRQWVMGGASRWWLHHSLAS 60 Query: 68 VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127 + ++L +KG + S + L + + ++ YE +K + K L Sbjct: 61 LDRALREKGSRLTLRRGK----SADVLQALAKECGAGRVHALHHYEPWWRNAEKAVAKAL 116 Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187 D +LLPPG++ + +YK+YTPF +A+++ + A P + P Sbjct: 117 D----LCLHDGILLLPPGAVRTGSGGIYKIYTPFARAVMEQMPPAAPNRTP---ATIDAP 169 Query: 188 VTPSNIPRFFDYPFQAIDPMFPIG--------EQNALHILRKFCKEKVYYYVEQRDIPAI 239 + R D+ P + G E A + F E V Y R++P++ Sbjct: 170 ESWPETDRLSDWGLLPTKPDWAGGFKKDWTPGEDGARANVAAFIDE-VGDYPTGRNLPSV 228 Query: 240 QGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYP 299 +GTS+LSP+L G +SP W+R+ D I +L ELIWR++ + P Sbjct: 229 EGTSRLSPHLHYGEVSPAYVWHRVTASNADAEI--------FLKELIWRDYTHTQICEMP 280 Query: 300 SVCMGKPFIPWTEKIEWNKDSHL---LQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMI 356 + ++++W AWK+G TG+PI+DA MRQL T GWMHNR+RMI Sbjct: 281 AYGSKNA-RDDFDRMDWRDLREARGDFVAWKKGRTGYPIVDAGMRQLWTTGWMHNRVRMI 339 Query: 357 TASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGK 416 ASFL+K LL+DWR G ++F L+D D A+N+ WQW A +G D+ + RI P Q + Sbjct: 340 AASFLIKHLLIDWRHGAKWFWDTLVDADYANNSVNWQWVAGSGIDANMFSRIMAPLTQSE 399 Query: 417 RFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYA 476 +FD G +IR W+PEL + + IH P + + D +YP I+ H+ L Y Sbjct: 400 KFDA-GDYIRQWVPELAALSNEVIHDPDAHDARPD---DYPAKIIGHRAGRERALAAYRR 455 Query: 477 AK 478 K Sbjct: 456 IK 457 >gi|8698592|dbj|BAA96850.1| cryptochrome3 [Danio rerio] Length = 598 Score = 361 bits (926), Expect = 2e-97, Method: Composition-based stats. Identities = 128/498 (25%), Positives = 202/498 (40%), Gaps = 39/498 (7%) Query: 10 HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69 + W R LR+ DN AL A + +D V V+I P + + F+ SL + Sbjct: 5 SVHWFRKGLRLHDNPALQEALNGADT-VRCVYILDPWFAGSANVGVNRWRFLLESLEDLD 63 Query: 70 KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH 129 SL + + D + VT+L + E RD + K Q Sbjct: 64 TSLRKLNSRLSVVRGQPTD----VFPRLFKEWNVTRLTFEYDSEPYGKERDAAIIKMAQE 119 Query: 130 -RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLV-QADLRSLPVPAIRL--- 184 V + L P I+ +M P Q +V + +L P+P I Sbjct: 120 YGVETVVRNSHTLYNPDRII----EMNNHSPPLTFKRFQAIVNRLELPRKPLPTITQEQM 175 Query: 185 --------TGPVTPSNIPRFFDYPFQAIDP---MFPIGEQNALHILRKFCKEKVYYYVEQ 233 +P + F+ ++ GE AL L K K + + Sbjct: 176 ARCRTQISDNHDEHYGVPSLEELGFRTQGDSLHVWKGGETEALERLNKHLDRKAWVANFE 235 Query: 234 RDIPAIQGT----SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWRE 289 R + Q + LSPYL G LS R + L++ F+ L + S S +L+WRE Sbjct: 236 RPRISGQSLFPSPTGLSPYLRFGCLSCRVFYYNLRDLFMKLR-RRSSPPLSLFGQLLWRE 294 Query: 290 FYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWM 349 F+ P+ + P +I W+ + L W +G TGFP IDA M QL GW+ Sbjct: 295 FFYTAGTNNPNFDHMEG-NPICVQIPWDHNPEALAKWAEGRTGFPWIDAIMTQLRQEGWI 353 Query: 350 HNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRI 408 H+ R A FL + DL + W G + F LLD D + N G W W S +F Sbjct: 354 HHLARHAVACFLTRGDLWISWESGMKVFEELLLDADWSVNAGSWMW-LSCSAFFQQFFHC 412 Query: 409 FNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDK------NDLSLNYPLPIVD 462 + P G+R DP G +IR ++P+L + P +YI+ P + + + ++YP P+++ Sbjct: 413 YCPVGFGRRTDPSGDYIRRYIPKLKDYPNRYIYEPWNAPESVQKAANCIVGVDYPKPMIN 472 Query: 463 HKKACHHTLNQYYAAKKQ 480 H ++ + + +Q Sbjct: 473 HAESSRLNIERMKQVYQQ 490 >gi|78191297|gb|ABB29887.1| cryptochrome 2 [Anopheles gambiae] Length = 961 Score = 361 bits (926), Expect = 2e-97, Method: Composition-based stats. Identities = 118/494 (23%), Positives = 188/494 (38%), Gaps = 32/494 (6%) Query: 10 HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69 + W R LR+ DN AL + VFI P + + F+ L + Sbjct: 6 TVHWFRKGLRLHDNPALREGLRGARTF-RCVFIIDPWFAGSSNVGINKWRFLLQCLDDLD 64 Query: 70 KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH 129 ++L + + + L + T L + E RD + + + Sbjct: 65 RNLRKLNSRLFVIRG----QPADALPKLFKEWGTTCLTFEEDPEPFGRVRDHNISEMCKE 120 Query: 130 -RVICKSFDDSVLLPPGSILNHALQMYKV-YTPFRKALIQNLVQADLRSL-------PVP 180 + S L I+ + Y F+ + + Sbjct: 121 LGIEVISAASHTLYNLERIIEKNGGRAPLTYHQFQAIIASMDAPPQPEAAITLDVIGNAN 180 Query: 181 AIRLTGPVTPSNIPRFFDYPFQAID---PMFPIGEQNALHILRKFCKEKVYYYVEQRDIP 237 + +P + F+ P++ GE AL L + + K + R Sbjct: 181 TPQYDDHDDKYGVPTLEELGFETEALRPPVWIGGETEALARLERHLERKAWVASFGRPKM 240 Query: 238 AIQGT----SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRH 293 Q + LSPYL G LS R + +L + + IK S +L+WREF+ Sbjct: 241 TPQSLLASQTGLSPYLRFGCLSTRLFYYQLTDLYKK--IKKACPPLSLHGQLLWREFFYC 298 Query: 294 LMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRL 353 P+ P +I W++++ L W G TGFP IDA M QL GW+H+ Sbjct: 299 AATKNPTFDKM-AGNPICVQIPWDRNAEALAKWASGQTGFPWIDAIMTQLREEGWIHHLA 357 Query: 354 RMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPT 412 R A FL + DL + W G + F LLD D + N G W W S + +F + P Sbjct: 358 RHAVACFLTRGDLWISWEEGMKVFEELLLDADWSVNAGMWMW-LSCSSFFQQFFHCYCPV 416 Query: 413 IQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLD------KNDLSLNYPLPIVDHKKA 466 G++ DP G +IR +LP L N PT++IH P + + K + +YPLP+V+H A Sbjct: 417 KFGRKADPNGDYIRRYLPVLKNFPTRFIHEPWNASESVQRAAKCLIGKDYPLPMVNHAIA 476 Query: 467 CHHTLNQYYAAKKQ 480 + + + Sbjct: 477 SRANMERIKQVYQH 490 >gi|50954649|ref|YP_061937.1| DNA photolyase [Leifsonia xyli subsp. xyli str. CTCB07] gi|50951131|gb|AAT88832.1| DNA photolyase [Leifsonia xyli subsp. xyli str. CTCB07] Length = 466 Score = 361 bits (926), Expect = 2e-97, Method: Composition-based stats. Identities = 152/487 (31%), Positives = 229/487 (47%), Gaps = 39/487 (8%) Query: 1 MKATTAMS-VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSH 59 M+ T A +VW R+DLR+ DN AL+AA S VI +++ + Sbjct: 1 MRKTNADDRPAVVWFRDDLRLADNPALHAAAE-SGRPVICLYVWDEDSPGLRSPGEAARW 59 Query: 60 FIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRR 119 +++ SL +++S+ + G E L + +F+NR+Y E R Sbjct: 60 WLHHSLTSLEESIGRAGSALAIRTGPAERVLAEVL----AEVDAGAVFWNRRYGEGERRV 115 Query: 120 DKLLEKRLQHRV-ICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLP 178 D+ ++ + + SF ++L P ++ + + VYTPF +A + R LP Sbjct: 116 DERVKSAARDTGLVANSFGANLLFEPWTVRTGSGTAFSVYTPFWRACLAR--PEPRRPLP 173 Query: 179 VPAIRLTGPVTPS-NIPRFFDYP-----FQAIDPMFPIGEQNALHILRKFCKEKVYYYVE 232 GP PS + P + + GE+ A L F E + Y Sbjct: 174 ALRRLRPGPSLPSLELDELKLLPVHPDWADGLRETWKPGERAAHRELSAFLGEGLARYRA 233 Query: 233 QRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYR 292 +RD+P I TS+LSP L G LSP Q W+ GA ++L+EL WREF Sbjct: 234 ERDVPGIAATSRLSPRLRWGELSPFQVWHATAAA---RDRSTAEGAATFLSELGWREFAY 290 Query: 293 HLMAFYPSVCMGKPFIPWTEKIEWNK-DSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHN 351 H P++ + W + L+AW+QG TG P++DA MR+L G MHN Sbjct: 291 HTYFERPALATVN-IHREYDSFPWPRLHPSALRAWQQGRTGVPLVDAGMRELWRTGVMHN 349 Query: 352 RLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNP 411 R+RM+ ASFL K+LL+DWR GE++F L+D D ASN WQW A +G D+ PYFR+FNP Sbjct: 350 RVRMVAASFLTKNLLIDWRRGEQWFWDTLVDADPASNPFNWQWVAGSGADTAPYFRVFNP 409 Query: 412 TIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTL 471 +Q ++FDP G ++R W+PE + + +YP P+VD + L Sbjct: 410 EVQREKFDPHGDYVRRWVPEWD-------------------TADYPEPLVDLAETRRAAL 450 Query: 472 NQYYAAK 478 + K Sbjct: 451 AAWETVK 457 >gi|78778672|ref|YP_396784.1| deoxyribodipyrimidine photo-lyase type I [Prochlorococcus marinus str. MIT 9312] gi|78712171|gb|ABB49348.1| deoxyribodipyrimidine photo-lyase type I [Prochlorococcus marinus str. MIT 9312] Length = 478 Score = 360 bits (925), Expect = 2e-97, Method: Composition-based stats. Identities = 167/485 (34%), Positives = 235/485 (48%), Gaps = 31/485 (6%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISAR-QSHFIYASLLQVQ 69 L W R DLRI DN+AL A S+A + + +I H SA ++ F+ SL ++ Sbjct: 7 LFWHRKDLRIFDNQALIKAFSLSNA-ITSTYILDRNY--THDFSANSRAWFLGDSLQELG 63 Query: 70 KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH 129 + + G + D + + + +N+ E E+ RD ++K L+ Sbjct: 64 NNWEKMGSRLVIEEG----DPVLIIPQLAKTIDAKFVIWNKTIEPYEINRDLQIKKNLKE 119 Query: 130 RVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNL------------VQADLRS 176 + I D +L+ P I + + Y VY PF K L + Q Sbjct: 120 KNIQVIESWDHLLVEPLKIFSGNNKPYSVYGPFYKNLKSKMNLLGLYDQDKVIFQFKDID 179 Query: 177 LPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFP-IGEQNALHILRKFCKEKV-YYYVEQR 234 + +L + + F + GE A +L KF EK Y Y R Sbjct: 180 NKLKENKLINSSDSTLKKFLKNIKFSGSNICPCRPGENGAEILLEKFINEKNIYSYNSAR 239 Query: 235 DIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKS-GAFSWLNELIWREFYRH 293 D+P+ GTS LS L G +S R+ WN + D S +W EL+WREFY+H Sbjct: 240 DLPSHNGTSFLSASLRFGTISIRKVWNATLDLNSDFESHENSLSIETWQKELVWREFYQH 299 Query: 294 LMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRL 353 + +P + G P+ + W ++ Q W G TG PI+DAAMRQLN+ GWMHNR Sbjct: 300 CLFHFPELEKG-PYRKKWGQFPWQNNNEWFQHWSNGETGVPIVDAAMRQLNSTGWMHNRC 358 Query: 354 RMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTI 413 RMI ASFLVKDL+ W++GE+ FM L+DGDLA+NNGGWQW+AS+G D P RIFNP Sbjct: 359 RMIVASFLVKDLICSWQMGEKKFMETLVDGDLAANNGGWQWSASSGMDPKP-LRIFNPYT 417 Query: 414 QGKRFDPQGTFIRHWLPELNNVPT-QYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLN 472 Q K+FDP +I+ W+PEL+ V ++ S L+KN NY PIVDH + Sbjct: 418 QAKKFDPICEYIKSWIPELSKVSNSDLLNGEISNLEKN----NYSTPIVDHNIQQRLFKS 473 Query: 473 QYYAA 477 Y Sbjct: 474 LYAEI 478 >gi|40254688|ref|NP_571861.2| cryptochrome-2 [Danio rerio] gi|28278010|gb|AAH46088.1| Cryptochrome 3 [Danio rerio] Length = 598 Score = 360 bits (925), Expect = 2e-97, Method: Composition-based stats. Identities = 128/498 (25%), Positives = 202/498 (40%), Gaps = 39/498 (7%) Query: 10 HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69 + W R LR+ DN AL A + +D V V+I P + + F+ SL + Sbjct: 5 SVHWFRKGLRLHDNPALQEALNGADT-VRCVYILDPWFAGSANVGVNRWRFLLESLEDLD 63 Query: 70 KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH 129 SL + + D + VT+L + E RD + K Q Sbjct: 64 TSLRKLNSRLFVVRGQPTD----VFPRLFKEWNVTRLTFEYDSEPYGKERDAAIIKMAQE 119 Query: 130 -RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLV-QADLRSLPVPAIRL--- 184 V + L P I+ +M P Q +V + +L P+P I Sbjct: 120 YGVETVVRNTHTLYNPDRII----EMNNHSPPLTFKRFQAIVNRLELPRKPLPTITQEQM 175 Query: 185 --------TGPVTPSNIPRFFDYPFQAIDP---MFPIGEQNALHILRKFCKEKVYYYVEQ 233 +P + F+ ++ GE AL L K K + + Sbjct: 176 ARCRTQISDNHDEHYGVPSLEELGFRTQGDSLHVWKGGETEALERLNKHLDRKAWVANFE 235 Query: 234 RDIPAIQGT----SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWRE 289 R + Q + LSPYL G LS R + L++ F+ L + S S +L+WRE Sbjct: 236 RPRISGQSLFPSPTGLSPYLRFGCLSCRVFYYNLRDLFMKLR-RRSSPPLSLFGQLLWRE 294 Query: 290 FYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWM 349 F+ P+ + P +I W+ + L W +G TGFP IDA M QL GW+ Sbjct: 295 FFYTAGTNNPNFDHMEG-NPICVQIPWDHNPEALAKWAEGRTGFPWIDAIMTQLRQEGWI 353 Query: 350 HNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRI 408 H+ R A FL + DL + W G + F LLD D + N G W W S +F Sbjct: 354 HHLARHAVACFLTRGDLWISWESGMKVFEELLLDADWSVNAGSWMW-LSCSAFFQQFFHC 412 Query: 409 FNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDK------NDLSLNYPLPIVD 462 + P G+R DP G +IR ++P+L + P +YI+ P + + + ++YP P+++ Sbjct: 413 YCPVGFGRRTDPSGDYIRRYIPKLKDYPNRYIYEPWNAPESVQKAANCIVGVDYPKPMIN 472 Query: 463 HKKACHHTLNQYYAAKKQ 480 H ++ + + +Q Sbjct: 473 HAESSRLNIERMKQVYQQ 490 >gi|61816948|gb|AAX56342.1| 6-4 photolyase [Dunaliella salina] Length = 600 Score = 360 bits (925), Expect = 3e-97, Method: Composition-based stats. Identities = 141/507 (27%), Positives = 221/507 (43%), Gaps = 35/507 (6%) Query: 1 MKATTA--MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHG--ISAR 56 M +T++ ++W R LR+ DN AL AC A V +FI P ++ + Sbjct: 40 MASTSSGQQGRSILWFRKGLRLHDNPALRDAC-TGSAAVFPIFIIDPYFLQKSNNKVGVN 98 Query: 57 QSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINE 116 + F+ SL + SL+ G + + E + + KL Y E Sbjct: 99 RYQFLLESLSDLNSSLTSLGSQLLVLRGTPE----EVIPRVLRDWSIKKLCYEIDTEPYA 154 Query: 117 VRRDKLLEKRLQH-RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLR 175 RD ++ + V K L ++ + + L+ V L Sbjct: 155 KARDARVDDMAREAGVEVKKHWSHTLYDTDMLVRENKGKAPLTMQAFEKLVDR-VGHPLT 213 Query: 176 SLPVPAIRLTG--------PVTPSNIPRFFDYPF-QAIDPMFPIGEQNALHILRKFCKEK 226 +LP P RL +P + + F +A +F GE AL L + K+ Sbjct: 214 ALPAPTARLPPVDVSLPGIKDAEVGVPTWQEMGFKEAPTAIFKGGETEALKRLEHYMKDT 273 Query: 227 VY--YYVEQRDIPAI---QGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSW 281 + + + P+ T+ LSPYL G LS R RL + + L K S Sbjct: 274 KWXASFEKPSTDPSAFTEPSTTALSPYLKFGCLSARFFHQRLLDVYR-LHPKHSQPPMSL 332 Query: 282 LNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMR 341 +L+WREF+ L + P+ P +I W+ + LL+AW+ G TG+P IDAAM Sbjct: 333 RGQLLWREFFYTLGSHTPNFDR-IAGNPICRQITWDTNPALLKAWRDGATGYPWIDAAMT 391 Query: 342 QLNTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGN 400 QL GWMH+ R A FL + DL + W G+E F LLD D N W W +++ Sbjct: 392 QLREWGWMHHLARHSVACFLTRGDLYLSWESGKEVFEELLLDADYFINAANWMWLSASAF 451 Query: 401 DSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDK------NDLSL 454 + YFR+++P + GK++D +G +IR +LP L ++P +YI+ P + + + Sbjct: 452 FAQ-YFRVYSPVVFGKKYDKEGAYIRKFLPVLKDMPAKYIYEPWTAPKEVQQRANCIIGR 510 Query: 455 NYPLPIVDHKKACHHTLNQYYAAKKQS 481 +YP PIVDH A + + AA K + Sbjct: 511 DYPAPIVDHAVASKECIARMGAAYKAT 537 >gi|21327675|gb|AAC37438.2| CPH1 [Chlamydomonas reinhardtii] Length = 1008 Score = 360 bits (925), Expect = 3e-97, Method: Composition-based stats. Identities = 135/472 (28%), Positives = 219/472 (46%), Gaps = 23/472 (4%) Query: 8 SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67 +VW R DLR+ D A + VI VFI PE+ Q + SL+ Sbjct: 6 KTAVVWFRRDLRVDD-NPALVAALAAAPNVIPVFIWAPEEEGQFQPGRCSRWWSKHSLVD 64 Query: 68 VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127 +Q++L+ G + + DS L + +F+N Y+ + RD ++ L Sbjct: 65 LQQALAALGSRLVIRRST---DSTAALLQLVTELGAEAVFFNHLYDPISLMRDHDCKRGL 121 Query: 128 -QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 V ++F+ +L P +L+ Q Y + F ++ V ++ Sbjct: 122 TAAGVAHRTFNGDMLYEPWDVLDPNKQPYSTFDDFWNSVRAMPVPPPFPVSAPASMPAVP 181 Query: 187 PVTPSNIPRFFDYPFQAIDPM--------FPIGEQNALHILRKFCKEKVYYYVEQRDIPA 238 PS D+ F + G A+ L F E++ + R Sbjct: 182 AAVPSMTVAEVDWFFTPEQEASSDQLKFKWKPGVGGAISELEHFLAERLTEFEHDRAKVD 241 Query: 239 IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFS---WLNELIWREFYRHLM 295 TS+LSP++ IG +S R + R+++ + L A S +L ++ +RE+ R+L Sbjct: 242 RDSTSRLSPWIHIGSISVRYIFYRVRQCQAEWLAAGTDRAQSCDDFLQQMGYREYSRYLA 301 Query: 296 AFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRM 355 +P + + W D H +AW+QG TG+PI+DAAMRQL + GW HNR R+ Sbjct: 302 FHFP-FIHERSLLGHLRACPWRIDQHAFKAWRQGQTGYPIVDAAMRQLWSSGWCHNRGRV 360 Query: 356 ITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQG 415 + ASFLVKDLL+ W+ G +++ +D DL + GWQ+ + +D+ P+ + + + Sbjct: 361 VAASFLVKDLLLPWQWGLKHYWDAQIDADLECDALGWQYVSGGMSDAHPFSYMMDLEKEA 420 Query: 416 KRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDK------NDLSLNYPLPIV 461 +RFDP G ++R WLP L+ +PT+YIHAP +L NYPLPI+ Sbjct: 421 RRFDPDGEYVRRWLPALSRLPTEYIHAPWKAPASVLAAADVELGCNYPLPII 472 >gi|161138112|gb|ABX58027.1| cryptochrome 1a [Triticum aestivum] Length = 700 Score = 360 bits (924), Expect = 3e-97, Method: Composition-based stats. Identities = 140/510 (27%), Positives = 235/510 (46%), Gaps = 34/510 (6%) Query: 1 MKATTAMS---------VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQH 51 M A+ +MS +VW R DLR+ DN A AA + +V+ ++ P++ + Sbjct: 1 MSASPSMSGGAGERTRTRTVVWFRRDLRVEDNPA-LAAAARTAGEVVPAYVWAPKEDGPY 59 Query: 52 GISARQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQ 111 ++ SL + SL + G + S D++ L T LF+N Sbjct: 60 YPGRVSRWWLSQSLKHLDASLRRLGATRLVTRRST--DTVAALLELVRSTGATHLFFNHL 117 Query: 112 YEINEVRRDKLLEKRL-QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLV 170 Y+ + RD +++ L + +SF+ +L P +L+ + ++TPF + + Sbjct: 118 YDPLSLVRDHRVKQVLGAEGITVQSFNSDLLYEPWEVLDDHGCPFTMFTPFWNTCLCMVD 177 Query: 171 QADLRSLP--VPAIRLTGPVTPSNIPRFFDYPFQAIDPM----FPIGEQNALHILRKFCK 224 P + + L+ + ++ F D + + + + G QNA F Sbjct: 178 PPAPMLPPKRINSGELSRCCSSDDLI-FEDESERGSNALLARAWSPGWQNADKAFTAFIN 236 Query: 225 EKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEF----VDLLIKPKSGAFS 280 + Y R TS LSPYL G LS R+ +++++ + + + G Sbjct: 237 GPLIDYSVNRKKADSANTSLLSPYLHFGELSVRKVFHQIRMKQLTWSNESNGDGEEGCSL 296 Query: 281 WLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAM 340 +L + RE+ R L +P KP + W + + W+QG TG+P++DA M Sbjct: 297 FLRSIGLREYSRRLAFNHP-CSHEKPLLAHLRFFPWVVNEVYFKVWRQGRTGYPLVDAGM 355 Query: 341 RQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGN 400 R+L GW+H+R+R++ +SF VK L + WR G +YF LLD DL S+ GWQ+ + + Sbjct: 356 RELWATGWLHDRIRVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGSLP 415 Query: 401 DSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKN------DLSL 454 D RI NP +G +FDP G ++R WLPEL +PT++IH P + +L Sbjct: 416 DGRELDRIDNPQFEGYKFDPYGEYVRRWLPELARLPTEWIHHPWDAPESVLRAAGIELGS 475 Query: 455 NYPLPIVDHKKACHH---TLNQYYAAKKQS 481 NYPLPIV+ +A L++ + + S Sbjct: 476 NYPLPIVELDEAKSRLQDALSEMWELEAAS 505 >gi|159487060|ref|XP_001701553.1| cryptochrome photoreceptor [Chlamydomonas reinhardtii] gi|158271494|gb|EDO97311.1| cryptochrome photoreceptor [Chlamydomonas reinhardtii] Length = 1008 Score = 360 bits (924), Expect = 3e-97, Method: Composition-based stats. Identities = 135/472 (28%), Positives = 220/472 (46%), Gaps = 23/472 (4%) Query: 8 SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67 +VW R DLR+ D A + VI VFI PE+ Q + SL+ Sbjct: 6 KTAVVWFRRDLRVDD-NPALVAALAAAPNVIPVFIWAPEEEGQFQPGRCSRWWSKHSLVD 64 Query: 68 VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127 +Q++L+ G + + DS L + +F+N Y+ + RD ++ L Sbjct: 65 LQQALAALGSRLVIRRST---DSTAALLQLVTELGAEAVFFNHLYDPISLMRDHDCKRGL 121 Query: 128 -QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 V ++F+ +L P +L+ Q Y + F ++ V ++ Sbjct: 122 TAAGVAHRTFNGDMLYEPWDVLDPNKQPYSTFDDFWNSVRAMPVPPPFPVSAPASMPAVP 181 Query: 187 PVTPSNIPRFFDYPF--------QAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPA 238 PS D+ F + + G A+ L F E++ + R Sbjct: 182 AAVPSMTVAEVDWFFTPEQEASSDQLKFKWKPGVGGAISELEHFLAERLTEFEHDRAKVD 241 Query: 239 IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFS---WLNELIWREFYRHLM 295 TS+LSP++ IG +S R + R+++ + L A S +L ++ +RE+ R+L Sbjct: 242 RDSTSRLSPWIHIGSISVRYIFYRVRQCQAEWLAAGTDRAQSCDDFLQQMGYREYSRYLA 301 Query: 296 AFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRM 355 +P + + W D H +AW+QG TG+PI+DAAMRQL + GW HNR R+ Sbjct: 302 FHFP-FIHERSLLRHLRACPWRIDQHAFKAWRQGQTGYPIVDAAMRQLWSSGWCHNRGRV 360 Query: 356 ITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQG 415 + ASFLVKDLL+ W+ G +++ +D DL + GWQ+ + +D+ P+ + + + Sbjct: 361 VAASFLVKDLLLPWQWGLKHYWDAQIDADLECDALGWQYVSGGMSDAHPFSYMMDLEKEA 420 Query: 416 KRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDK------NDLSLNYPLPIV 461 +RFDP G ++R WLP L+ +PT+YIHAP +L NYPLPI+ Sbjct: 421 RRFDPDGEYVRRWLPALSRLPTEYIHAPWKAPASVLAAADVELGCNYPLPII 472 >gi|124514880|gb|EAY56391.1| Deoxyribodipyrimidine photolyase [Leptospirillum rubarum] Length = 536 Score = 360 bits (924), Expect = 3e-97, Method: Composition-based stats. Identities = 150/477 (31%), Positives = 232/477 (48%), Gaps = 27/477 (5%) Query: 10 HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69 +VW RN+LR++DN L A ++ VFI P + AR SL + Sbjct: 64 SIVWFRNNLRLSDNPPLREAAERG--PLLPVFIGEPSR-GASPEGARHWWRA-RSLRCLD 119 Query: 70 KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH 129 SLS+ G + + D L + ++ K+ + + R L+ L Sbjct: 120 HSLSRLGAPLLFLRG----DPAILLPDLATRLKIDKILAMEAIDPDGRRTQSRLQSALSG 175 Query: 130 R-VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLP-----VPAIR 183 + V F L+PP + +KV+TPF + +L P +P R Sbjct: 176 KPVEFHLFPADYLVPPAGLPAERRSPWKVFTPFWQRAQSHLPPPLPLPAPDRLDGIPFPR 235 Query: 184 LTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS 243 P P D+ + + + GE+ A L F ++++ Y +RD +S Sbjct: 236 SETPEDWGWEPEKPDWAAE-MRSFWDPGEEGARRRLNAFLEKRLKNYAVKRDFLDEDTSS 294 Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCM 303 LSP+L+ G +S R W ++E P+ +L+EL WREF HLM +P + Sbjct: 295 LLSPHLANGEISIRSVWWSIRE-----STAPEEDRAKFLSELGWREFSAHLMWHHPDLAT 349 Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363 +P +I W +D L AW++G TG P++DA MRQL +G++ NR+RM+ SFLVK Sbjct: 350 -QPLQKGRPEIAWREDPSSLLAWQKGRTGIPLVDAGMRQLRRLGFLPNRVRMVAGSFLVK 408 Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423 +LL+DWR G E+F L+D D A+N WQW + G D+ P+FRIFNP +QG++FDP+G Sbjct: 409 NLLIDWRKGREWFSDNLVDHDPANNAASWQWISGYGADAAPWFRIFNPVLQGEKFDPEGR 468 Query: 424 FIRHWLPELNNVPTQYIHAPH----SWLDKNDLSLNYPL--PIVDHKKACHHTLNQY 474 +++ +LPEL +P +Y+H P S LD + + P PIVD + L + Sbjct: 469 YVKTYLPELARIPPRYLHCPWTAPSSLLDNAGIGKDSPYRNPIVDLGLSRKRALQAW 525 >gi|254485504|ref|ZP_05098709.1| deoxyribodipyrimidine photolyase [Roseobacter sp. GAI101] gi|214042373|gb|EEB83011.1| deoxyribodipyrimidine photolyase [Roseobacter sp. GAI101] Length = 465 Score = 360 bits (923), Expect = 4e-97, Method: Composition-based stats. Identities = 156/480 (32%), Positives = 223/480 (46%), Gaps = 35/480 (7%) Query: 12 VWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQKS 71 +W R DLR+TD+ AL AA VI VFI G+ A + + + Sbjct: 1 MWFRRDLRLTDHPALSAAAQTG-RPVIPVFIRDDAVA---GLGAAPKWRLGLGIGAFDDA 56 Query: 72 LSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ-HR 130 L +K + D++E L + ++++R Y+ RD +++ L+ Sbjct: 57 LREKSSRLILRKG----DALEVLQDLIKETGAGAVYWSRLYDPQATARDADIKEALKGAD 112 Query: 131 VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTP 190 V +SF ++ P ++ YKVYTPF A+ V A L + LT P T Sbjct: 113 VEARSFGGHLMFEPWTVETKTGGNYKVYTPFWNAVKNTGVDAPLSA----PKNLTAPDTW 168 Query: 191 SNIPRFFDY--------PFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGT 242 ++ + P +GE++A L F V Y RD+P + GT Sbjct: 169 PRSDDLAEWTMGGAMQRGADVVRPFVQLGEKSAQSRLGAFMAHGVADYKANRDLPGVDGT 228 Query: 243 SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVC 302 S LS L++G +SP QCW+ + D K GA ++L EL+WREF HLM P + Sbjct: 229 SNLSENLALGEISPHQCWHAGQRALHD----GKQGAETFLKELVWREFAYHLMHHSPRIL 284 Query: 303 MGKPFIPWTEKIEWNKDSHL--LQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASF 360 + + WN+D L ++AWK G TG P +DAAMR+L G MHNR RMI AS+ Sbjct: 285 TDN-WREEWQAFPWNEDERLAEVKAWKHGRTGEPFVDAAMRELYVTGRMHNRGRMIVASY 343 Query: 361 LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDP 420 L K L+ WRIG+++F L+D D ASN GWQWAA +G D+ PYFR+FNP Q +FD Sbjct: 344 LTKHLMCHWRIGQKWFEDCLIDWDPASNAMGWQWAAGSGPDATPYFRVFNPATQLDKFDK 403 Query: 421 QGTFIRHWLPELNNVPTQ-----YIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYY 475 + W+ E P + P W S +YP IV + L Y Sbjct: 404 NRDYTSRWIAEGRANPHADALRFFDAIPKRWNLSA--SDDYPDRIVALDEGRERALENYK 461 >gi|254468959|ref|ZP_05082365.1| deoxyribodipyrimidine photo-lyase [beta proteobacterium KB13] gi|207087769|gb|EDZ65052.1| deoxyribodipyrimidine photo-lyase [beta proteobacterium KB13] Length = 429 Score = 360 bits (923), Expect = 4e-97, Method: Composition-based stats. Identities = 151/430 (35%), Positives = 226/430 (52%), Gaps = 20/430 (4%) Query: 54 SARQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYE 113 + ++ FIY L ++++L + G F D + + +F NR YE Sbjct: 8 NDQRVDFIYQVLQDIKQTLKKYGSDIWIL----FGDPVHEIPKLAESINANAIFVNRDYE 63 Query: 114 INEVRRDKLLEKRLQH-RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQA 172 V RD ++K+L +SF D VL I+ Y V++P+R ++ L+ + Sbjct: 64 KYGVNRDNDVQKKLSELNKTFQSFKDQVLFEADEIVTKNNTHYSVFSPYRNNHLEKLLIS 123 Query: 173 DLRSLPVPAIRLT-GPVTPSNIPRFFDYPFQAID-PMFPIG--EQNALHILRKFCKEKVY 228 +T + D F + + F I Q+ + +F K+++ Sbjct: 124 GSGVSSYKLDDITFEKFNIDKMLTLDDIGFNSSNISSFQIATTHQDIQKQINEF-KDRLE 182 Query: 229 YYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWR 288 +Y + R+ PAI+G S LS + G +S R+ N + + SG+ SWLNELIWR Sbjct: 183 HYDQTRNFPAIKGVSYLSVHNRFGTISIREMANICLQNYA------TSGSKSWLNELIWR 236 Query: 289 EFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGW 348 +FY ++ + V G F + +++ + ++WKQG TGFPI+DAAMRQLNT G+ Sbjct: 237 DFYFQIIVNFSHVQDGHSFKLQYDNLQYENNESFFESWKQGMTGFPIVDAAMRQLNTTGY 296 Query: 349 MHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRI 408 MHNRLRMI ASFL KDLL+DWR GEEYF +L+D D ++NNGGWQWAAS G D+ P+FRI Sbjct: 297 MHNRLRMIVASFLTKDLLIDWRWGEEYFKEKLIDYDFSANNGGWQWAASVGCDAQPWFRI 356 Query: 409 FNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACH 468 FNP +Q ++FD G FI+ ++PEL+ + IH PH+ +YP PI+DH Sbjct: 357 FNPLLQSQKFDSDGKFIKKYVPELSEFDKKNIHEPHAKFTP----KDYPKPIIDHATQRP 412 Query: 469 HTLNQYYAAK 478 L + Sbjct: 413 KALKMFEHVN 422 >gi|115446841|ref|NP_001047200.1| Os02g0573200 [Oryza sativa Japonica Group] gi|46806340|dbj|BAD17529.1| cryptochrome 1a [Oryza sativa Japonica Group] gi|113536731|dbj|BAF09114.1| Os02g0573200 [Oryza sativa Japonica Group] Length = 718 Score = 360 bits (923), Expect = 4e-97, Method: Composition-based stats. Identities = 142/499 (28%), Positives = 229/499 (45%), Gaps = 24/499 (4%) Query: 3 ATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIY 62 A A +VW R DLR+ DN A AA + +V+ V++ PE+ + ++ Sbjct: 13 AGEAGVRTVVWFRRDLRVEDNPA-LAAAARAAGEVVPVYVWAPEEDGPYYPGRVSRWWLS 71 Query: 63 ASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKL 122 SL + SL + G + S D++ L T LF+N Y+ + RD Sbjct: 72 QSLKHLDASLRRLGASRLVTRRSA--DAVVALIELVRSIGATHLFFNHLYDPLSLVRDHR 129 Query: 123 LEKRL-QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLP--V 179 ++ L + +SF+ +L P +++ + ++ PF + A P + Sbjct: 130 VKALLTAEGIAVQSFNADLLYEPWEVVDDDGCPFTMFAPFWDRCLCMPDPAAPLLPPKRI 189 Query: 180 PAIRLTGPVTPSNIPRFFDYPFQAIDPM----FPIGEQNALHILRKFCKEKVYYYVEQRD 235 L PS+ F D + + + + G QNA L F + Y R Sbjct: 190 APGELPARRCPSDELVFEDESERGSNALLARAWSPGWQNADKALAAFLNGPLMDYSVNRK 249 Query: 236 IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEF----VDLLIKPKSGAFSWLNELIWREFY 291 TS LSPYL G LS R+ +++++ + + +L + RE+ Sbjct: 250 KADSASTSLLSPYLHFGELSVRKVFHQVRMKQLMWSNEGNHAGDESCVLFLRSIGLREYS 309 Query: 292 RHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHN 351 R+L +P + KP + W D + W+QG TG+P++DA MR+L GW+H+ Sbjct: 310 RYLTFNHP-CSLEKPLLAHLRFFPWVVDEVYFKVWRQGRTGYPLVDAGMRELWATGWLHD 368 Query: 352 RLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNP 411 R+R++ +SF VK L + WR G +YF LLD DL S+ GWQ+ + + D RI NP Sbjct: 369 RIRVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGSLPDGRELDRIDNP 428 Query: 412 TIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKN------DLSLNYPLPIVDHKK 465 ++G +FDP G ++R WLPEL +PT++IH P + +L NYPLPIV+ Sbjct: 429 QLEGYKFDPHGEYVRRWLPELARLPTEWIHHPWDAPESVLQAAGIELGSNYPLPIVELDA 488 Query: 466 ACHH---TLNQYYAAKKQS 481 A L++ + + S Sbjct: 489 AKTRLQDALSEMWELEAAS 507 >gi|87280964|gb|ABD36589.1| cryptochrome 1 [Podarcis siculus] Length = 618 Score = 359 bits (922), Expect = 5e-97, Method: Composition-based stats. Identities = 126/501 (25%), Positives = 204/501 (40%), Gaps = 38/501 (7%) Query: 7 MSVH-LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASL 65 M V+ + W+R LR+ DN+AL +D V+I P + + F+ L Sbjct: 1 MGVNAVHWVRQGLRLPDNRALREVIQGADTA-RCVYILDPSFAGSSNVGINRWRFLLQCL 59 Query: 66 LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125 + +L + + + + +TKL E RD ++K Sbjct: 60 EDLDANLRKLNSRLFVIRG----QPADVFPRLFKEWNITKLSIEYDSEPFGKERDAAIKK 115 Query: 126 RLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLV-QADLRSLPVPAI-- 182 + S L L+ +++ P Q L+ + + +PV I Sbjct: 116 LASEAGVEVIVRISHTLY---DLDKIIELNGGQPPLTYKRFQTLISRMEPLEMPVETITA 172 Query: 183 ----RLTGPVTPSNIPR-----FFDYPFQA---IDPMFPIGEQNALHILRKFCKEKVYYY 230 + T PV+ + + + F ++P GE AL L + + K + Sbjct: 173 EVMSKCTTPVSDDHDEKCGVPSLEELGFDTGGLPSAVWPGGETEALTRLERHLERKAWVA 232 Query: 231 VEQRDIPAIQGT----SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELI 286 +R + LSPYL G LS R + +L + + + K S S +L+ Sbjct: 233 NFERPRMNANSLLASPTGLSPYLRFGCLSCRLFYFKLTDLYKKVK-KNSSPPLSLYGQLL 291 Query: 287 WREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTI 346 WREF+ P + P +I W+++ L W +G TGFP IDA M QL Sbjct: 292 WREFFYTAATNNPRFDKMEG-NPICVQIPWDRNPEALAKWAEGRTGFPWIDAIMTQLRQE 350 Query: 347 GWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPY 405 GW+H+ R A FL + DL + W G + F LLD D + N G W W S + + Sbjct: 351 GWIHHLARRAVACFLTRGDLWISWEEGMKVFEELLLDADWSVNAGSWMW-LSCSSFFQQF 409 Query: 406 FRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLD------KNDLSLNYPLP 459 F + P G+R DP G +IR +LP L P +YI+ P + + K + +NYP P Sbjct: 410 FHCYCPVGFGRRTDPNGDYIRRYLPVLRGFPAKYIYDPWNAPEGVQKVAKCVIGVNYPKP 469 Query: 460 IVDHKKACHHTLNQYYAAKKQ 480 +V+H +A + + +Q Sbjct: 470 MVNHTEASRLNIERMKQIYQQ 490 >gi|16444957|dbj|BAB70686.1| cryptochrome 1a [Oryza sativa Japonica Group] Length = 710 Score = 359 bits (922), Expect = 5e-97, Method: Composition-based stats. Identities = 142/499 (28%), Positives = 229/499 (45%), Gaps = 24/499 (4%) Query: 3 ATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIY 62 A A +VW R DLR+ DN A AA + +V+ V++ PE+ + ++ Sbjct: 13 AGEAGVRTVVWFRRDLRVEDNPA-LAAAARAAGEVVPVYVWAPEEDGPYYPGRVSRWWLS 71 Query: 63 ASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKL 122 SL + SL + G + S D++ L T LF+N Y+ + RD Sbjct: 72 QSLKHLDASLRRLGASRLVTRRSA--DAVVALIELVRSIGATHLFFNHLYDPLSLVRDHR 129 Query: 123 LEKRL-QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLP--V 179 ++ L + +SF+ +L P +++ + ++ PF + A P + Sbjct: 130 VKALLTAEGIAVQSFNADLLYEPWEVVDDDGCPFTMFAPFWDRCLCMPDPAAPLLPPKRI 189 Query: 180 PAIRLTGPVTPSNIPRFFDYPFQAIDPM----FPIGEQNALHILRKFCKEKVYYYVEQRD 235 L PS+ F D + + + + G QNA L F + Y R Sbjct: 190 APGELPARRCPSDELVFEDESERGSNALLARAWSPGWQNADKALAAFLNGPLMDYSVNRK 249 Query: 236 IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEF----VDLLIKPKSGAFSWLNELIWREFY 291 TS LSPYL G LS R+ +++++ + + +L + RE+ Sbjct: 250 KADSASTSLLSPYLHFGELSVRKVFHQVRMKQLMWSNEGNHAGDESCVLFLRSIGLREYS 309 Query: 292 RHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHN 351 R+L +P + KP + W D + W+QG TG+P++DA MR+L GW+H+ Sbjct: 310 RYLTFNHP-CSLEKPLLAHLRFFPWVVDEVYFKVWRQGRTGYPLVDAGMRELWATGWLHD 368 Query: 352 RLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNP 411 R+R++ +SF VK L + WR G +YF LLD DL S+ GWQ+ + + D RI NP Sbjct: 369 RIRVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGSLPDGRELDRIDNP 428 Query: 412 TIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKN------DLSLNYPLPIVDHKK 465 ++G +FDP G ++R WLPEL +PT++IH P + +L NYPLPIV+ Sbjct: 429 QLEGYKFDPHGEYVRRWLPELARLPTEWIHHPWDAPESVLQAAGIELGSNYPLPIVELDA 488 Query: 466 ACHH---TLNQYYAAKKQS 481 A L++ + + S Sbjct: 489 AKTRLQDALSEMWELEAAS 507 >gi|44843616|emb|CAE54427.1| sCRY2L protein [Spalax judaei] Length = 606 Score = 359 bits (922), Expect = 5e-97, Method: Composition-based stats. Identities = 124/503 (24%), Positives = 198/503 (39%), Gaps = 33/503 (6%) Query: 1 MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHF 60 M SVH W R LR+ DN +L AA + V V+I P + + F Sbjct: 30 MAVDGGSSVH--WFRKGLRLHDNPSLLAAVRGARC-VRCVYILDPWFAASSSVGINRWRF 86 Query: 61 IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120 + SL + SL + + + + VT+L + E RD Sbjct: 87 LLQSLEDLDTSLRKLNSRLFVVRG----QPADVFPRLFKEWGVTRLTFEYDSEPFGKERD 142 Query: 121 KLLEKRLQH-RVICKSFDDSVLLPPGSILNHALQ-MYKVYTPFRKALIQNLVQADL---- 174 + K + V + + L I++ Q Y F+ + + + Sbjct: 143 AAIMKMAKEAGVEVVTENSHTLYDLDRIIDLNGQKPPLTYKRFQAIISRMELPKKPVVAV 202 Query: 175 ---RSLPVPAIRLTGPVTPSNIPRFFDYPF--QAIDPM-FPIGEQNALHILRKFCKEKVY 228 + A +P + F + + P + GE AL L K + K + Sbjct: 203 TSQQMESCRAEIQDNHDDTYGVPSLEELGFPTEGLGPAVWQGGETEALARLDKHLERKAW 262 Query: 229 YYVEQRDIPAIQGT----SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNE 284 +R + LSPYL G LS R + RL + + + + + S + Sbjct: 263 VANYERPRMNANSLLASPTGLSPYLRFGCLSCRLFYYRLWDLYKKVK-RNSTPPLSLFGQ 321 Query: 285 LIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLN 344 L+WREF+ P + P +I W+++ L W +G TGFP IDA M QL Sbjct: 322 LLWREFFYTAATNNPRFDRMEG-NPICIQIPWDRNPEALAKWAEGKTGFPWIDAIMTQLR 380 Query: 345 TIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSV 403 GW+H+ R A F + DL V W G F LLD D + N G W W S Sbjct: 381 QEGWIHHLARHAVACFPTRGDLWVSWESGVRVFDELLLDADFSVNAGSWMW-LSCSAFFQ 439 Query: 404 PYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLD------KNDLSLNYP 457 +F + P G+R DP G +IR +LP+L P++YI+ P + + + + ++YP Sbjct: 440 QFFHCYCPVGFGRRTDPSGDYIRRYLPKLKGFPSRYIYEPWNAPESIQKAARCIIGVDYP 499 Query: 458 LPIVDHKKACHHTLNQYYAAKKQ 480 P+V+H + + + +Q Sbjct: 500 RPMVNHAETSRLNIERMKQIYQQ 522 >gi|307354928|ref|YP_003895979.1| deoxyribodipyrimidine photo-lyase [Methanoplanus petrolearius DSM 11571] gi|307158161|gb|ADN37541.1| Deoxyribodipyrimidine photo-lyase [Methanoplanus petrolearius DSM 11571] Length = 475 Score = 359 bits (922), Expect = 5e-97, Method: Composition-based stats. Identities = 159/483 (32%), Positives = 233/483 (48%), Gaps = 29/483 (6%) Query: 1 MKATT-AMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQW-RQHGISARQS 58 M T ++S H+ DLRI DN L +A +S++ VI F A + + Sbjct: 1 MPEKTFSLSAHI--FTRDLRIDDNPPLLSALASSES-VITFFAAEKNLATENPALCENRL 57 Query: 59 HFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVR 118 F+ SL + ++++KG ++ +D+ L + V ++ R Y ++ Sbjct: 58 AFLSESLSDLSGAIAEKGGEIRF-----YDEGALKLAEKLCRTGVEAVYMTRDYTPYAIK 112 Query: 119 RDKLLEKRLQHRV-ICKSFDDSVLLPPGSILNHALQMYKVYTPF-RKALIQNLVQADLRS 176 R+ L+K ++L P + + YKV+TPF R A + + + + + Sbjct: 113 RENSLKKTCNDAGCSFFPVPGALLNEPEDVRKSDGEPYKVFTPFYRNASLIPVHEPETCT 172 Query: 177 LPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDI 236 + +IP +A + F G L +L + ++ Y ++RD Sbjct: 173 FQNFSREELFDGASHDIPFGKSGTEEAKNRAFSGGRSEGLRLLGE--TGRLKNYEDERDF 230 Query: 237 PAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMA 296 PA TS LS +L G +S R+ R+ + + +L WR+F+ H+ Sbjct: 231 PAKACTSMLSAHLRFGTVSVREICRRISDTL--------GPGHGLIRQLYWRDFFTHIAY 282 Query: 297 FYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMI 356 YP V G PF E + W L W +G TGFPIIDA MR+LN G+MHNR R+ Sbjct: 283 HYPHVFKG-PFQKRFESLHWTDSKELFDKWCKGMTGFPIIDAGMRELNDTGYMHNRERLA 341 Query: 357 TASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGK 416 ASFLVKDL +DWR GE YF S+L D D + NNG WQW+ASTG D+ PYFRIFNP +Q K Sbjct: 342 AASFLVKDLHIDWRSGERYFASKLTDYDPSVNNGNWQWSASTGCDAQPYFRIFNPWLQQK 401 Query: 417 RFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND--LSLNYPLPIVDHKKACHHTLNQY 474 +FDP +IR W+PEL+++ + IH LDK YP PIVDHK Y Sbjct: 402 KFDPDCIYIRRWVPELSDLEPKEIHN----LDKTGSVPPAGYPNPIVDHKNEARAAKIIY 457 Query: 475 YAA 477 A Sbjct: 458 SGA 460 >gi|302772136|ref|XP_002969486.1| hypothetical protein SELMODRAFT_91442 [Selaginella moellendorffii] gi|300162962|gb|EFJ29574.1| hypothetical protein SELMODRAFT_91442 [Selaginella moellendorffii] Length = 494 Score = 359 bits (922), Expect = 5e-97, Method: Composition-based stats. Identities = 135/485 (27%), Positives = 222/485 (45%), Gaps = 26/485 (5%) Query: 6 AMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASL 65 S +VW R DLR+ DN A + V+ +FI E+ + ++ SL Sbjct: 2 GSSTTIVWFRRDLRVEDNP--ALAAASKAGAVVPLFIWCAEEEGEFRPGRVSRWWLKQSL 59 Query: 66 LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125 + + SL++ G + + S+ L + T++FYN Y+ + RD ++ Sbjct: 60 MHLNSSLTKLGCPLLMQK--SRGSSLNALLQIARDTKATQVFYNHLYDPVSLIRDHHVKH 117 Query: 126 RL-QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL 184 L Q+ + ++F+ +L P + + Y + F + + + D LP + Sbjct: 118 GLSQYGITVQTFNADLLYEPWELFDARGNPYTHFQLFWQRYLGMDHEPDGPLLPPKRLSP 177 Query: 185 TGPV------TPSNIPRFFDYPFQAIDPM----FPIGEQNALHILRKFCKEKVYYYVEQR 234 P+ D ++ + M + G NA L F + Y + R Sbjct: 178 PAEPGLGHLGLPAEELGLEDDFEKSSNAMLARTWTPGWSNANKSLDAFLAGPLADYGDNR 237 Query: 235 DIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEF----VDLLIKPKSGAFSWLNELIWREF 290 TS LSP+L G LS R+ ++ ++ + D + A +L L +RE+ Sbjct: 238 GKVDGGTTSMLSPHLHYGELSIRKVFHAVRSKQLLWITDGRQPAERSASLFLRALGYREY 297 Query: 291 YRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMH 350 R+L +P + + W D +AW+QG TG+P++DA MR+L GW+H Sbjct: 298 SRYLCFHFP-FTHERSLLGHLRHFPWRVDEGFFKAWRQGRTGYPLVDAGMRELWATGWLH 356 Query: 351 NRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFN 410 NR+R+I +SF VK L + WR G +YF LLD DL S+ GWQ+ + + D R+ Sbjct: 357 NRIRVIVSSFCVKFLQLPWRWGMKYFWDTLLDADLESDILGWQYISGSLPDGHELDRMEI 416 Query: 411 PTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSW------LDKNDLSLNYPLPIVDHK 464 P I+G+RFDP G ++R WLPEL+ +PT++IH P + +L NYP P+V+ Sbjct: 417 PHIEGRRFDPDGNYVRKWLPELSRLPTEWIHEPWNAPPSVLCAAGIELGCNYPRPVVEIA 476 Query: 465 KACHH 469 A Sbjct: 477 AARER 481 >gi|77963980|gb|ABB13331.1| cryptochrome 1b [Hordeum vulgare subsp. vulgare] gi|77963982|gb|ABB13332.1| cryptochrome 1b [Hordeum vulgare subsp. vulgare] gi|77963984|gb|ABB13333.1| cryptochrome 1b [Hordeum vulgare subsp. vulgare] Length = 712 Score = 359 bits (922), Expect = 6e-97, Method: Composition-based stats. Identities = 143/490 (29%), Positives = 229/490 (46%), Gaps = 23/490 (4%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 +VW R DLR+ DN A AA + +V+ ++ +PE+ + ++ SL ++ Sbjct: 18 VVWFRRDLRVEDNPA-LAAAARTAGEVVPAYVWSPEEDGPYFPGRVSRWWLSQSLKHLEA 76 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL-QH 129 SL + G + S DS+ L T LF+N Y+ + RD L++ L Sbjct: 77 SLHRLGAGKLVTRRSA--DSVAALLQLVRDTGATHLFFNHLYDPISLVRDHRLKEMLTSE 134 Query: 130 RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG-PV 188 ++ +SF+ +L P + + Q + ++ PF + LP I + Sbjct: 135 GIVVQSFNADLLYDPWEVNDDDGQPFNMFMPFWNRCLSMPYDPPAPLLPPKRINSGDLSM 194 Query: 189 TPSNIPRFFDYPFQAIDPM----FPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244 PS+ F D + + + + G QNA L F + Y R TS Sbjct: 195 CPSDDLIFEDESERGSNALLARAWSPGWQNADKALSAFLNGPLIDYSVNRKKADSANTSL 254 Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFS----WLNELIWREFYRHLMAFYPS 300 LSPYL G LS R+ ++ ++ + + + A +L + RE+ R+L +P Sbjct: 255 LSPYLHFGELSVRKVFHLVRMKQLVWSNEGNHAAEESCTLFLRSVGLREYSRYLCFNHP- 313 Query: 301 VCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASF 360 KP + W D + W+QG TG+P++DA MR+L GW+H+R+R++ +SF Sbjct: 314 CSHEKPLLAHLRFFPWVVDESTFKFWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSF 373 Query: 361 LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDP 420 VK L + WR G +YF LLD DL S+ GWQ+ + + DS I NP ++G +FDP Sbjct: 374 FVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGSLPDSRELDHIDNPQLEGYKFDP 433 Query: 421 QGTFIRHWLPELNNVPTQYIHAPHSWLDK------NDLSLNYPLPIVDHKKAC---HHTL 471 G ++R WLPEL +PT++IH P +L NYPLPIV+ A L Sbjct: 434 HGEYVRRWLPELARLPTEWIHHPWDAPASVLQAAGVELGSNYPLPIVELDTAQVRLQEAL 493 Query: 472 NQYYAAKKQS 481 ++ + + S Sbjct: 494 SEMWQLEAAS 503 >gi|84517100|ref|ZP_01004456.1| deoxyribodipyrimidine photolyase [Loktanella vestfoldensis SKA53] gi|84508995|gb|EAQ05456.1| deoxyribodipyrimidine photolyase [Loktanella vestfoldensis SKA53] Length = 471 Score = 359 bits (921), Expect = 6e-97, Method: Composition-based stats. Identities = 151/478 (31%), Positives = 224/478 (46%), Gaps = 26/478 (5%) Query: 8 SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67 + +VW+R DLR+ D+ AL AAC + VIAV+I + G + +L Q Sbjct: 4 TPIIVWVRRDLRLADHPALTAACESGQ-PVIAVYIHDDQVASLGGAQKLRLDL---ALAQ 59 Query: 68 VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127 K+L+ +G + L + ++++R Y RD ++ L Sbjct: 60 FGKTLADRGSRLILRKGPALG----VLRDLIRETGAGAVYWSRLYHATANDRDAAVKSAL 115 Query: 128 QHRVIC-KSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 + I +SF +L P ++ YKVYTP A+ N V L Sbjct: 116 KADGIVARSFTGHLLFEPWTVATKTGGFYKVYTPMWNAVRGNEVAEPLPCPAKITAPAVW 175 Query: 187 PVTP----SNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGT 242 P + + R + +GE A L F ++V YV+ RD+PAI+GT Sbjct: 176 PASDALADWQLRRAMQRGGDILARHCTVGEDAARDRLGAFIADRVANYVKGRDLPAIKGT 235 Query: 243 SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVC 302 S LS L+ G +SPR CW+ + D K+ A +L EL+WREF HL P + Sbjct: 236 SNLSENLTFGEISPRMCWHAGQRALRD----GKADAEVFLKELVWREFAYHLAHHTPRIL 291 Query: 303 MGKPFIPWTEKIEWNKD-SHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFL 361 + + WN + + AW+QG TG P +DAAMR++ G MHNR RMI AS+L Sbjct: 292 TDN-WKEDWDAFPWNTQITPEVAAWQQGRTGIPFVDAAMREMYVTGTMHNRGRMIVASYL 350 Query: 362 VKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQ 421 K LL W++G ++F L+D D ASN GWQW+A +G D+ PYFR+FNP Q +FD Sbjct: 351 TKHLLTHWKVGLDWFADHLIDWDPASNAMGWQWSAGSGPDATPYFRVFNPVTQLDKFDKD 410 Query: 422 GTFIRHWLPELNNVPTQYIHA-----PHSWLDKNDLSLNYPLPIVDHKKACHHTLNQY 474 +++ W+ E P P SW + D + YP P+V ++ L+ Y Sbjct: 411 RAYVKRWIAERYRSPQDSALTYFEMIPQSWQMRPDAA--YPDPVVTPEQGRTRALDAY 466 >gi|284046106|ref|YP_003396446.1| deoxyribodipyrimidine photo-lyase [Conexibacter woesei DSM 14684] gi|283950327|gb|ADB53071.1| Deoxyribodipyrimidine photo-lyase [Conexibacter woesei DSM 14684] Length = 476 Score = 359 bits (921), Expect = 7e-97, Method: Composition-based stats. Identities = 154/483 (31%), Positives = 219/483 (45%), Gaps = 27/483 (5%) Query: 8 SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67 S +VW R DLR+ D+ L A + A+V+ VF+ P R S ++ F+ L + Sbjct: 4 STAIVWFRRDLRLHDHPPLVRALA-AHARVVPVFVLDPAIVRGRFASGARTAFMLDCLRE 62 Query: 68 VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127 + L ++G + + L + + + + + RD+ + L Sbjct: 63 LDADLRERGSGLVVREGRPERE----LPALAREIGAAAVHWASDATPYAIARDRRVRSAL 118 Query: 128 QHRVICKSF---DDSVLLPPGSILNHALQMYKVYTPFRKALIQ---NLVQADLRSLPVPA 181 + + + G A Y V+TPF +A Q V LP Sbjct: 119 AAAQPAVAAVPGPGNFVADVGRPRTRAGGPYTVFTPFHRAWQQLERRTVHRTPAVLPPLP 178 Query: 182 IRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQG 241 L PS GE+ A ++ + Y D A G Sbjct: 179 AGLRRGALPSLAALGLTDELSPTARAVEPGERAARRAAERWLDGHLGDYARDHDRLAG-G 237 Query: 242 TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSV 301 TS LSPYL G LS R+C R + GA +++ +L WR+FY H++ +P Sbjct: 238 TSALSPYLHHGCLSARECEQRAVR-------RGGEGAEAFVRQLAWRDFYAHVLLHHPE- 289 Query: 302 CMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFL 361 + + + W +D LL AW+ G TGFP++DA MRQL GWMHNR R++T SFL Sbjct: 290 DVRREHQERMRALRWERDDELLAAWQDGRTGFPLVDAGMRQLRASGWMHNRARLVTGSFL 349 Query: 362 VKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYF-RIFNPTIQGKRFDP 420 KDL +DWR GE +FM LLDGD+ASNNG WQW AS G D P F RI NP +Q +R DP Sbjct: 350 TKDLQLDWRAGEAWFMRWLLDGDVASNNGNWQWIASVGVDPAPAFRRILNPALQQRRHDP 409 Query: 421 QGTFIRHWLPELNNVPTQYIHAPHSWLDKND------LSLNYPLPIVDHKKACHHTLNQY 474 G ++R W+PEL VP + P ++ + +YP PIVDH L +Y Sbjct: 410 DGAYVRRWVPELARVPDALLTEPWLMSEQQQRAAGCRIGADYPAPIVDHAHERRRALERY 469 Query: 475 YAA 477 AA Sbjct: 470 RAA 472 >gi|145224666|ref|YP_001135344.1| deoxyribodipyrimidine photo-lyase [Mycobacterium gilvum PYR-GCK] gi|145217152|gb|ABP46556.1| deoxyribodipyrimidine photo-lyase type I [Mycobacterium gilvum PYR-GCK] Length = 449 Score = 358 bits (920), Expect = 8e-97, Method: Composition-based stats. Identities = 149/474 (31%), Positives = 232/474 (48%), Gaps = 31/474 (6%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 ++W R DLR+ D AL AA D V+A ++ P +R+ ++Y +L + Sbjct: 2 PAVLWFRRDLRLADLPALVAAAE-VDGDVLACYVLDPRLKAT--GGSRRLQYLYDALRDL 58 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128 ++SL + ++ D + + + + + + +RRD+ + L Sbjct: 59 RESLDGRLLI-------TRGDPVSRIPVLAAAVGASSVHVSEDFTPFGMRRDEQVRDALG 111 Query: 129 HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188 V + L+ PG + YKV+TPF A Q+ + S P P+ P Sbjct: 112 D-VELVATGSPYLVSPGRVTKGDGSPYKVFTPFFDAWRQHGWRPPAESGP-PSAHWLDPA 169 Query: 189 TPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPY 248 + P D P ++ P GE A ++F + + Y E R+ P + TS++S + Sbjct: 170 DVAGKPGITDIPDAGVELDLPAGETAARRQWKQFVDDGLAGYAEDRNRPDLAATSRMSAH 229 Query: 249 LSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFI 308 L G + PR + GA ++L EL +R+FY ++A +P + Sbjct: 230 LKFGTIHPRTL---------AADLGRGKGAQAYLRELAFRDFYAAVVAEWPRSTWWN-WN 279 Query: 309 PWTEKIEWNKDSHL---LQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365 + IE + +AWK G TGFPI+DA MRQL G++HNR+RMI ASFLVKDL Sbjct: 280 STFDAIEVDDGPDAQRAFEAWKAGRTGFPIVDAGMRQLAETGFVHNRVRMIVASFLVKDL 339 Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425 + W+ G +F+ QL DGD+A+N GWQWAA G D+ PYFR+FNPT QGK+FDP G ++ Sbjct: 340 HLPWQWGARWFLDQLTDGDMANNQHGWQWAAGCGTDAAPYFRVFNPTTQGKKFDPAGVYV 399 Query: 426 RHWLPELNNVPTQ-YIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478 + W+ EL +V + +H D +YP PIVDH + L +Y + + Sbjct: 400 KRWVEELRDVASSVDVHN-----LDRDRPADYPEPIVDHAQERAEALRRYNSLR 448 >gi|88808070|ref|ZP_01123581.1| Deoxyribodipyrimidine photolyase [Synechococcus sp. WH 7805] gi|88788109|gb|EAR19265.1| Deoxyribodipyrimidine photolyase [Synechococcus sp. WH 7805] Length = 492 Score = 358 bits (920), Expect = 8e-97, Method: Composition-based stats. Identities = 160/500 (32%), Positives = 224/500 (44%), Gaps = 37/500 (7%) Query: 6 AMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQW----RQHGISARQSHFI 61 A + L W R DLR+ DN L AA A V V++ P + ++ + F+ Sbjct: 2 ASARTLFWHRRDLRLADNTGLQAAVALGPA-VTGVYVLDPSIITPPPQLPPMAPARLWFL 60 Query: 62 YASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDK 121 SL+++Q+ + G Q D + L + + ++R E RD+ Sbjct: 61 VESLIELQERWREAGSRLLVLQG----DPLTLLPQLAALLDSSTVVWSRDVEPYARERDR 116 Query: 122 LLEKRLQHRV-ICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVP 180 + K LQ D +L+ P + Y+VY PF + + + ++ P Sbjct: 117 GVAKALQADGRQVLVDWDQLLVAPELLKTGNGDPYRVYGPFLRNWRGQVERLRPSTVAAP 176 Query: 181 A--------IRLTGPVTPSNIPRFFDYPFQAIDPMFP-------------IGEQNALHIL 219 + T + + R + QA+ + GE A+ L Sbjct: 177 TDLQDLTAEQQQAIRSTETALGRLWADGQQALQRLQTEHGFAGMDLCPCRPGEVAAVDQL 236 Query: 220 RKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEF-VDLLIKPKSGA 278 F + Y R+ P GTS LS LS+G LSPRQ W + + + + Sbjct: 237 AVFADGPLLGYEPDRNFPGTAGTSGLSAALSVGTLSPRQAWCAAQAAKDLARSDEQRQAI 296 Query: 279 FSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDA 338 W EL WREFY+ + +P + G P+ + W + WK G TG PIIDA Sbjct: 297 AVWEQELAWREFYQQALFHFPELADG-PYREQWRRFPWENNEDWFDFWKDGQTGMPIIDA 355 Query: 339 AMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAAST 398 AMRQL GWMHNR RMI ASFLVKDL+ DWR GE FM +DGDLA+NNGGWQW+AS+ Sbjct: 356 AMRQLQQSGWMHNRCRMIVASFLVKDLICDWRWGERAFMELEVDGDLAANNGGWQWSASS 415 Query: 399 GNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPL 458 G D P RIFNP Q +FD G +IR W+PEL +V T+ + S YP Sbjct: 416 GMDPKP-LRIFNPATQASKFDADGDYIRRWVPELRHVSTKDL---LSGEIGALERRGYPE 471 Query: 459 PIVDHKKACHHTLNQYYAAK 478 P+V+HK Y K Sbjct: 472 PLVNHKIQQAKFKVLYATIK 491 >gi|86608285|ref|YP_477047.1| deoxyribodipyrimidine photolyase [Synechococcus sp. JA-2-3B'a(2-13)] gi|86556827|gb|ABD01784.1| deoxyribodipyrimidine photolyase [Synechococcus sp. JA-2-3B'a(2-13)] Length = 486 Score = 358 bits (920), Expect = 9e-97, Method: Composition-based stats. Identities = 131/491 (26%), Positives = 228/491 (46%), Gaps = 32/491 (6%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGIS------ARQSHFIY 62 L+W R DLR+ D++ L AC + +I ++ P Q+ + + + F+ Sbjct: 2 TVLLWFRTDLRLLDHQPLTRACQQG-SPLIPLYCLDPRQFGETSLGLRPRTSPFRGQFLL 60 Query: 63 ASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKL 122 SL +++ L +G Q + + + + V ++ + + E Sbjct: 61 ESLADLRQQLRSRGSDLVIRQGQPE----QVIPTLAQEWGVEAVYAHEEVGTEEKEVAAA 116 Query: 123 LEKRLQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPA 181 +E+ L+ I + L P + Q+ +++T FRK + + D +P Sbjct: 117 VERALRSLGIRLQVDWGHTLYHPEDLPFCLSQLPELFTRFRKQVEGSTPIRDPLPIPSIP 176 Query: 182 IRLTGPVTPSNIPRFFDYPFQAIDP------MFPIGEQNALHILRKFCKE--KVYYYVEQ 233 +G + P +P + + G A L+ + + ++ Y E Sbjct: 177 PLPSG-LDPGPLPTLASLGLSSPARDPRARFTYTGGSTAAHARLQTYFWDLDRLRIYKET 235 Query: 234 RD-IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYR 292 R+ + +S+LS +L++G +SPR + +K + + + + EL+WR+++R Sbjct: 236 RNGMLDPDDSSRLSAWLALGCISPRTVYAEVKRYEQERV--RNESTYWLVFELLWRDYFR 293 Query: 293 HLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNR 352 ++A + + I I W +D QAW +G TG+P++DA MR+L G+M NR Sbjct: 294 FILAKHGAKLFRPSGIQGI-PIPWQQDWPRFQAWCRGETGYPLVDANMRELAATGFMSNR 352 Query: 353 LRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPT 412 R ASFL K+L +DWR+G E+F S L+D D+ASN G W + A GND+ FR F+ Sbjct: 353 GRQNVASFLTKNLGIDWRMGAEWFESLLIDYDVASNYGNWNYTAGVGNDARG-FRYFHIP 411 Query: 413 IQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND------LSLNYPLPIVDHKKA 466 Q + +DP+G ++RHWLPEL +P IH P+ L ++YP P+VD +K+ Sbjct: 412 KQSREYDPKGDYLRHWLPELAGIPGDKIHEPYRLTAAEQKQFGVRLGVDYPRPLVDLEKS 471 Query: 467 CHHTLNQYYAA 477 Y AA Sbjct: 472 LAANRRVYEAA 482 >gi|291277653|ref|YP_003495244.1| deoxyribodipyrimidine photo-lyase [Candidatus Rickettsia amblyommii] gi|289657737|gb|ADD14598.1| deoxyribodipyrimidine photo-lyase [Candidatus Rickettsia amblyommii AaR/Sc] Length = 478 Score = 358 bits (920), Expect = 9e-97, Method: Composition-based stats. Identities = 154/486 (31%), Positives = 239/486 (49%), Gaps = 32/486 (6%) Query: 8 SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQH-GISARQSHFIYASLL 66 ++WLR +LR+ DN++ AA NSD K++ +FI + R+ F+ +L Sbjct: 3 KTSIIWLRRNLRLHDNRSFAAALRNSD-KILPIFIFDTTILERFKNPHDRRLSFLANTLC 61 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 + L + + IE + ++ ++ + YE + + RDK +++ Sbjct: 62 LINDELKKLKGKLLVFHG----NPIEIISKLTAILKIENIYADEDYEPSNIARDKTVQEL 117 Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQA----DLRSLPVPAI 182 L + D +L+ P +L + YKVYTP+ +A + + + L + Sbjct: 118 LGSNCTLNLYCDHLLIKPARVLTKDNKPYKVYTPYMQAFRKFIANNGVIAHNKLLMNYSY 177 Query: 183 RLTGPVTPSNIPRFF--DYPFQAIDPMFPIGE----------QNALHILRKFCKEKVYYY 230 L G + D A + + IG +NA +IL KF ++ +Y Sbjct: 178 NLEGKLYIPQDIDLKTIDLNVGASEALKQIGYVYKEDELWQPRNAQNILNKFIANRINFY 237 Query: 231 VEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREF 290 RD GTS +SPYL G++S R+C+ + + G +W+NELIWREF Sbjct: 238 KTDRDFLYRNGTSTISPYLRFGLISIRECYRKAFNASL------NPGTVTWINELIWREF 291 Query: 291 YRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMH 350 Y ++ +P+ + + KI WN + TG+PIIDAA++QL + GWMH Sbjct: 292 YATILYHFPNTVNEEFLEKYRNKIPWNNKKEYFNKFINAETGYPIIDAAVKQLISDGWMH 351 Query: 351 NRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFN 410 NR RMI ASF K+LL+DWR GEE+F L+D +LASN GGWQWA+S G D+ PYFRIFN Sbjct: 352 NRSRMIVASFFTKNLLLDWRKGEEFFAQYLMDYELASNVGGWQWASSCGTDAQPYFRIFN 411 Query: 411 PTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHT 470 P QG+ FDP +I+ +LP L T IH + + + NYP P+VD+ + Sbjct: 412 PYTQGQHFDPDAEYIKKYLPTLKKAQTHIIHNINFY----KMYDNYPKPMVDYVLSRAKA 467 Query: 471 LNQYYA 476 + + Sbjct: 468 IEVFKQ 473 >gi|312378885|gb|EFR25332.1| hypothetical protein AND_09443 [Anopheles darlingi] Length = 558 Score = 358 bits (920), Expect = 1e-96, Method: Composition-based stats. Identities = 125/506 (24%), Positives = 205/506 (40%), Gaps = 38/506 (7%) Query: 6 AMSVHLVWLRNDLRITDNKALYAACHNSDA-----KVIAVFIATPEQWRQHGISARQSHF 60 + W R LRI DN AL A + +F+ P + + + F Sbjct: 3 KKETIIHWFRKGLRIHDNPALSLAVDKVRQNPTKYCLRPIFVLDPAIRKWLRVGPNRWRF 62 Query: 61 IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120 + +L+ + ++L + + ++ + V+ L Y E V+RD Sbjct: 63 LQQTLVNLDENLRTINSRLYVVRG----NPVQIFPELFDRWNVSLLTYEHDIEPYAVQRD 118 Query: 121 KLLE-KRLQHRVICKSFDDSVLLPPGSILNHALQ----MYKVYTPFRKALIQNLVQADLR 175 K +E +H V + P +I+ Y+ Y A L + Sbjct: 119 KTVEGHAREHNVTTHVEVSHTIFHPETIVKRNGGKPPLTYQKYVSLASACTIPLPLPAPQ 178 Query: 176 SLPVPAIRLTGPVTPSNIPRFFDYPF---------QAIDPMFPIGEQNALHILRKFCKEK 226 LP + +D P ++ FP GE AL + + K Sbjct: 179 KLPGKGVEPEKDSQERKDQSCYDPPTMNELDIDEGSLLECKFPGGETEALSRMEQCLSRK 238 Query: 227 VY--YYVEQRDIPA--IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWL 282 + + + P T+ LSPYL G LS R ++R++E K S + Sbjct: 239 AWICSFEKPNTSPNSLEPSTTVLSPYLKFGCLSARLFYSRIQETIKGQ--KHSQPPVSLI 296 Query: 283 NELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQ 342 +++WREFY + A P+ +++W+ + L AW +G TG+P IDA MRQ Sbjct: 297 GQMMWREFYYCVAAVTPNFDKM-SGNDVCIQVDWDTNKEYLNAWTEGRTGYPFIDAIMRQ 355 Query: 343 LNTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGND 401 L GW+H+ R A FL + DL + W G+ F LLD D A N G W W S Sbjct: 356 LRQEGWIHHLARHAVACFLTRGDLWISWEEGQRVFEELLLDADWALNAGNWMW-LSASAF 414 Query: 402 SVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDK------NDLSLN 455 YFR+++P GK+ DP+G +I+ ++PEL P+ I+ P + + + Sbjct: 415 FHQYFRVYSPVAFGKKTDPEGKYIKKYVPELARFPSGIIYEPWKANLETQKKLGCIIGKD 474 Query: 456 YPLPIVDHKKACHHTLNQYYAAKKQS 481 YP IV H++ + + AA +++ Sbjct: 475 YPKRIVVHEEISKTNIQRMSAAYRRN 500 >gi|44843614|emb|CAE54426.1| sCRY2S protein [Spalax judaei] Length = 591 Score = 358 bits (919), Expect = 1e-96, Method: Composition-based stats. Identities = 120/494 (24%), Positives = 195/494 (39%), Gaps = 31/494 (6%) Query: 10 HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69 + W R LR+ DN +L AA + V V+I P + + F+ SL + Sbjct: 22 SVHWFRKGLRLHDNPSLLAAVRGARC-VRCVYILDPWFAASSSVGINRWRFLLQSLEDLD 80 Query: 70 KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH 129 SL + + + + VT+L + E RD + K + Sbjct: 81 TSLRKLNSRLFVVRG----QPADVFPRLFKEWGVTRLTFEYDSEPFGKERDAAIMKMAKE 136 Query: 130 -RVICKSFDDSVLLPPGSILNHALQ-MYKVYTPFRKALIQNLVQADL-------RSLPVP 180 V + + L I++ Q Y F+ + + + + Sbjct: 137 AGVEVVTENSHTLYDLDRIIDLNGQKPPLTYKRFQAIISRMELPKKPVVAVTSQQMESCR 196 Query: 181 AIRLTGPVTPSNIPRFFDYPF--QAIDPM-FPIGEQNALHILRKFCKEKVYYYVEQRDIP 237 A +P + F + + P + GE AL L K + K + +R Sbjct: 197 AEIQDNHDDTYGVPSLEELGFPTEGLGPAVWQGGETEALARLDKHLERKAWVANYERPRM 256 Query: 238 AIQGT----SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRH 293 + LSPYL G LS R + RL + + + + + S +L+WREF+ Sbjct: 257 NANSLLASPTGLSPYLRFGCLSCRLFYYRLWDLYKKVK-RNSTPPLSLFGQLLWREFFYT 315 Query: 294 LMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRL 353 P + P +I W+++ L W +G TGFP IDA M QL GW+H+ Sbjct: 316 AATNNPRFDRMEG-NPICIQIPWDRNPEALAKWAEGKTGFPWIDAIMTQLRQEGWIHHLA 374 Query: 354 RMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPT 412 R A F + DL V W G F LLD D + N G W W S +F + P Sbjct: 375 RHAVACFPTRGDLWVSWESGVRVFDELLLDADFSVNAGSWMW-LSCSAFFQQFFHCYCPV 433 Query: 413 IQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLD------KNDLSLNYPLPIVDHKKA 466 G+R DP G +IR +LP+L P++YI+ P + + + + ++YP P+V+H + Sbjct: 434 GFGRRTDPSGDYIRRYLPKLKGFPSRYIYEPWNAPESIQKAARCIIGVDYPRPMVNHAET 493 Query: 467 CHHTLNQYYAAKKQ 480 + + +Q Sbjct: 494 SRLNIERMKQIYQQ 507 >gi|171779964|ref|ZP_02920868.1| hypothetical protein STRINF_01751 [Streptococcus infantarius subsp. infantarius ATCC BAA-102] gi|171281312|gb|EDT46747.1| hypothetical protein STRINF_01751 [Streptococcus infantarius subsp. infantarius ATCC BAA-102] Length = 471 Score = 358 bits (918), Expect = 1e-96, Method: Composition-based stats. Identities = 172/484 (35%), Positives = 240/484 (49%), Gaps = 31/484 (6%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHN--SDAKVIAVFIATPEQWRQHGISARQSHFIYAS 64 M ++W+RND R DN AL A ++ + +I ++ PE + S + ++S Sbjct: 1 MGNSVLWIRNDFRFHDNTALINAINDIKDNENLIFIYHLDPEIIKIETTS---YAYFFSS 57 Query: 65 LLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLE 124 L +S +KG+ + L+ + + K++YN +++ L Sbjct: 58 LNSYYESCLKKGLDIYFLYGEILTCFDTLLNEFS---NIDKIYYNTIECGYGKSQEQKLN 114 Query: 125 KRLQ-HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALI-------QNLVQADLRS 176 + L+ V SF D L +L YKV+T + + QN+ A L Sbjct: 115 RFLKRKNVEVFSFYDHHLHSANKVLKEDNSHYKVFTHYYNKWMSSKKPEEQNIDYAKLSE 174 Query: 177 LPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDI 236 + + P+ + D GE+ A L F K+ Y E R+ Sbjct: 175 IILSDFSKKDPIGKEKFIELRNL--LNNDFSMFTGEEKARECLADFMNAKLCSYNENREY 232 Query: 237 PAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMA 296 P + GTS LS YL+ G LS R+ +N L G ++ EL WR+FY + Sbjct: 233 PFLDGTSHLSHYLTTGQLSVREVFNAATMMPFSL------GQEIFIKELAWRDFYNMIYY 286 Query: 297 FYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMI 356 F+P+ + I I W D WK G TGFPIIDAAMRQL GWMHNRLRMI Sbjct: 287 FHPNQ-HNEEIIEKYRYINWEYDEENFIKWKSGLTGFPIIDAAMRQLREEGWMHNRLRMI 345 Query: 357 TASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGK 416 TASFL+KDLL+DWR+GE+YF L+D D ASN GGWQWAAS G D+VPYFRIFNP Q K Sbjct: 346 TASFLIKDLLIDWRLGEKYFSEMLIDYDTASNIGGWQWAASVGTDAVPYFRIFNPITQSK 405 Query: 417 RFDPQGTFIRHWLPELNNVPTQYIHAP---HSWLDKN---DLSLNYPLPIVDHKKACHHT 470 ++DP+G FI+ ++ EL ++PTQYIH P L++N D+ Y PIVDHK Sbjct: 406 KYDPEGKFIKRYVKELEDIPTQYIHEPFKFKKQLEENYGIDIKKLYVSPIVDHKTQRQKA 465 Query: 471 LNQY 474 L + Sbjct: 466 LEMF 469 >gi|269794388|ref|YP_003313843.1| deoxyribodipyrimidine photo-lyase type I [Sanguibacter keddieii DSM 10542] gi|269096573|gb|ACZ21009.1| deoxyribodipyrimidine photo-lyase type I [Sanguibacter keddieii DSM 10542] Length = 450 Score = 358 bits (918), Expect = 1e-96, Method: Composition-based stats. Identities = 146/476 (30%), Positives = 225/476 (47%), Gaps = 35/476 (7%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDA---KVIAVFIATPEQWRQHGISARQSHFIYASL 65 + W R DLR+ DN AL +A + A +V+ +F+ W + + ++ ASL Sbjct: 2 TTIHWFRRDLRLADNPALNSAWEQAQADGSQVVGLFVLDDRLWG--PSGSPRRDYLLASL 59 Query: 66 LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125 + +S G + + E L + + + +E RD+ +E Sbjct: 60 RALDES---MGGRLVVRRGAP----TEVLPAVAREVGARTVHVAESFEPFGRARDEEVET 112 Query: 126 RL-QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL 184 L + V + + + PG +L Y+V+TPFR A + + + Sbjct: 113 ALAEDDVELRRTGSAYAVSPGRVLTRTGTPYRVFTPFRTAWLDHGWCGP--------AQD 164 Query: 185 TGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244 G V + +P D P +P+ P GE+ AL +F ++ V Y + R+ P + TS+ Sbjct: 165 PGEVDWAELPS-EDLPEADGEPLRPAGEEAALERWHEFLED-VAGYDDDRNRPDLDLTSR 222 Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304 LS L G + PR DL GA S+ +EL WREF+ ++ P Sbjct: 223 LSVPLKWGEIHPRTLL-------ADLKNLRDEGAASFRSELAWREFHADVLFHSPEAATL 275 Query: 305 --KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLV 362 + +P ++ +AW +G TG+P++DA MRQL GWMH R+RM+ SFLV Sbjct: 276 SIREVMPDDAWTPRSQADRWFEAWTEGRTGYPMVDAGMRQLLAEGWMHGRVRMLVGSFLV 335 Query: 363 KDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQG 422 KDL + W+ G +FM LLD D + N WQW A TG D+ PYFRIFNP QG +FDP G Sbjct: 336 KDLHIPWQRGARHFMQHLLDADRSQNQLNWQWVAGTGLDASPYFRIFNPVTQGLKFDPDG 395 Query: 423 TFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478 ++R W+PEL +P + +H P + +YP +VDH + +L+ Y K Sbjct: 396 EYVRRWVPELRGIPGKAVHEPWKLPTPPE---DYPDQLVDHGRERKESLDAYARFK 448 >gi|221633352|ref|YP_002522577.1| deoxyribodipyrimidine photo-lyase [Thermomicrobium roseum DSM 5159] gi|221156145|gb|ACM05272.1| deoxyribodipyrimidine photo-lyase [Thermomicrobium roseum DSM 5159] Length = 467 Score = 358 bits (918), Expect = 1e-96, Method: Composition-based stats. Identities = 164/480 (34%), Positives = 246/480 (51%), Gaps = 21/480 (4%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M+ + W+R DLR+ DN+A AA +++ +F+ P S R++ F++A+L Sbjct: 1 MTTVVWWVRRDLRLHDNQA-LAAALTRARELVPLFVLDPALLAGPTSSQRRNAFLFAALR 59 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 + +L ++G + L + + T + RRD+ + + Sbjct: 60 SLDAALRRRGSRLIVRAGRPE----QVLPTVVRESGATLVMAEADGSPYARRRDEAVARS 115 Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 V + + S L P GSI + Y+VY+ FR+A + + + LP P Sbjct: 116 ----VPLQLVEGSTLRPLGSIRAPTGEPYRVYSQFRRAWFRLPIPSPQDILPAPPRLPPV 171 Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246 P S A+ F E A L+ F + + Y +R+ G+SQLS Sbjct: 172 PRLASEPIPESPL---AVPERFAPSEDAARQRLQHFLAQGLASYHLRRNALDGSGSSQLS 228 Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP 306 PY G+LS R+ W + +GA +WL+EL+WREFY+HL+A +P Sbjct: 229 PYFRFGLLSVREAWCAAARYLDE--PDAAAGARAWLDELLWREFYQHLLAAWPESARM-S 285 Query: 307 FIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLL 366 P + W + L W++G TGFP++DAAMRQL + GWM NR RMI ASFL K LL Sbjct: 286 MQPEFRDVAWPGSNDALARWQEGRTGFPVVDAAMRQLVSEGWMSNRARMIVASFLSKLLL 345 Query: 367 VDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIR 426 VDWR GE +F +L+DGDLA+N GGWQW+A TG D+ PYFRIFNP +QG++ DP G+++R Sbjct: 346 VDWREGERFFRRELVDGDLAANVGGWQWSAGTGTDAAPYFRIFNPVLQGEQHDPNGSWVR 405 Query: 427 HWLPELNNVPTQYIHAPHSWL------DKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQ 480 WLPEL NVP +Y+ AP + +YP PIV+++ A L + + ++ Sbjct: 406 TWLPELANVPREYLFAPWRMPIEVQLRAGCRIGHDYPAPIVEYESARARALEWFRSVRQA 465 >gi|308080350|ref|NP_001183937.1| cryptochrome 2 [Zea mays] gi|257802570|gb|ACV66337.1| cryptochrome 2 [Zea mays] Length = 643 Score = 358 bits (918), Expect = 1e-96, Method: Composition-based stats. Identities = 138/490 (28%), Positives = 226/490 (46%), Gaps = 22/490 (4%) Query: 10 HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69 +VW R DLR+ DN A AA + +V+ ++ +PE+ + ++ SL + Sbjct: 18 TVVWFRRDLRVEDNPA-LAAAARTAGEVVPAYVWSPEEDGPYYPGRVSRWWLSQSLKHLD 76 Query: 70 KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL-Q 128 SL + G + S+ D++ L T LF+NR Y+ + RD ++++L Sbjct: 77 ASLRRLGACRLVTRRSS--DAVVALIDLVRSTGATHLFFNRLYDPLSLVRDHRVKEQLSA 134 Query: 129 HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188 + +SF+ +L P +L+ + ++ PF + A P Sbjct: 135 EGITVQSFNADLLYEPWEVLDDDGFPFTMFAPFWNRCLCMPDPAAPLLPPKRINSGDLSR 194 Query: 189 TPSNIPRFFDYPFQAIDPM----FPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244 P + F D + + + + G QNA L F + Y TS Sbjct: 195 CPWDELIFEDESEKGSNALLARAWSPGWQNADKALTAFLDGPLVDYSANHKKADSASTSL 254 Query: 245 LSPYLSIGVLSPRQCWNRLKEEF----VDLLIKPKSGAFSWLNELIWREFYRHLMAFYPS 300 LSPYL G LS R+ +++++ + D + +L + RE+ R+L +P Sbjct: 255 LSPYLHFGELSVRKVFHQVRMKQLMWSNDGDRAGEESCTLFLRAIGLREYSRYLTFNHP- 313 Query: 301 VCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASF 360 + KP + W D + W+QG TG+P++DA MR+L GW+H+R+R++ +SF Sbjct: 314 CSLEKPLLSHLRFFPWVVDEVHFKVWRQGRTGYPLVDAGMRELWATGWVHDRIRVVVSSF 373 Query: 361 LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDP 420 VK L + WR G +YF LLD DL S+ GWQ+ + + D RI NP +G +FDP Sbjct: 374 FVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGSLPDGRELDRIDNPQFEGYKFDP 433 Query: 421 QGTFIRHWLPELNNVPTQYIHAPHSWLDK------NDLSLNYPLPIVDHKKACHH---TL 471 G ++R WLPEL +PT++IH P + +L NYP PIV+ A L Sbjct: 434 HGEYVRRWLPELARLPTEWIHHPWDAPESVLQAAGVELGSNYPRPIVELDAANSRLQGAL 493 Query: 472 NQYYAAKKQS 481 ++ + + S Sbjct: 494 SEMWELEAAS 503 >gi|157412647|ref|YP_001483513.1| putative DNA photolyase [Prochlorococcus marinus str. MIT 9215] gi|157387222|gb|ABV49927.1| putative DNA photolyase [Prochlorococcus marinus str. MIT 9215] Length = 478 Score = 358 bits (918), Expect = 1e-96, Method: Composition-based stats. Identities = 167/485 (34%), Positives = 240/485 (49%), Gaps = 31/485 (6%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISAR-QSHFIYASLLQVQ 69 L W R DLRI DN+AL A S+A + + +I H +A ++ F+ SL ++ Sbjct: 7 LFWYRKDLRIFDNQALNKAISLSNA-ITSTYIFDENY--SHDFNANSRAWFLANSLQELG 63 Query: 70 KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH 129 + ++ G + D I + +F+N+ E E+ RD ++K L+ Sbjct: 64 NNWNKMGSRLVIEKG----DPILIIPQLAKLIDAKFVFWNKSIEPYEINRDLKIKKNLKE 119 Query: 130 RVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLV--------------QADL 174 + I D +L+ P I + + Y VY PF K L + + Sbjct: 120 KNIQFIESWDHLLVEPSKIFSGNNKPYSVYGPFYKNLKSKMKFLGSYNQYKVIFQFKDID 179 Query: 175 RSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEK-VYYYVEQ 233 L I + + + +P I P P GE A +L+ F EK +Y Y Sbjct: 180 NKLKENKIINSSDSVLNKFLKNIKFPGSNICPCRP-GEVAAESLLKNFINEKKIYSYNSV 238 Query: 234 RDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKS-GAFSWLNELIWREFYR 292 RD+P+ GTS LS L G +S R+ WN D S +W EL+WREFY+ Sbjct: 239 RDLPSHIGTSFLSASLRFGTISIRKVWNATLNLNSDFESHENSLSIETWQKELVWREFYQ 298 Query: 293 HLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNR 352 H + +P + G P+ ++ W ++ Q W +G TG PI+DAAMRQLN+ GWMHNR Sbjct: 299 HCLFHFPELEKG-PYRKKWDQFPWLNNNEWFQHWSKGETGVPIVDAAMRQLNSTGWMHNR 357 Query: 353 LRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPT 412 RMI ASFLVKDL+ +W++GE+ FM L+DGDLA+NNGGWQW+AS+G D P RIFNP Sbjct: 358 CRMIVASFLVKDLICNWQMGEKKFMETLVDGDLAANNGGWQWSASSGMDPKP-LRIFNPY 416 Query: 413 IQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLN 472 Q K+FDP +I+ W+PEL+ V I +N+ NY PIV+H + Sbjct: 417 TQAKKFDPICEYIKSWIPELSKVSNSDILNGEISNLENN---NYSKPIVNHNIQQRLFKS 473 Query: 473 QYYAA 477 Y Sbjct: 474 LYAEI 478 >gi|309811658|ref|ZP_07705437.1| putative deoxyribodipyrimidine photo-lyase [Dermacoccus sp. Ellin185] gi|308434459|gb|EFP58312.1| putative deoxyribodipyrimidine photo-lyase [Dermacoccus sp. Ellin185] Length = 463 Score = 358 bits (918), Expect = 2e-96, Method: Composition-based stats. Identities = 145/498 (29%), Positives = 222/498 (44%), Gaps = 64/498 (12%) Query: 9 VHLVWLRNDLRITDNKALYAACHNS----------------DAKVIAVFIATPEQWRQHG 52 LVW R+DLR D+ AL AA ++ A V+A+F+ E Sbjct: 2 TSLVWFRDDLRTFDHPALRAAVDHAVTSQGSQESDDGASSEPAGVVALFVLDEESDGLRP 61 Query: 53 ISARQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQY 112 + +++ SL+ ++ L GI + + D ++ ++++ V + +NR+Y Sbjct: 62 LGGAVKWWLHHSLVALRAKLEALGIPLVLRRGAAHDVVLDVVETF----DVDFVGWNRRY 117 Query: 113 EINEVRRDKLLEKRLQHR-VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQ 171 E D ++ R V S+ ++L P +I Y+V+TPF KA + Sbjct: 118 GGPERVVDAGIKAAFAERDVEVHSYAANLLFEPWTITTGGGTPYRVFTPFWKACLSEPQP 177 Query: 172 ADL-----RSLPVPAIRLTGPVTPSNIPRFFDYPFQ-----AIDPMFPIGEQNALHILRK 221 + P A+ ++ + P + I + GE A +L Sbjct: 178 REPLDAPSALTPPSALVEQAGQASDDLDTWALLPTKPDWSTGIAKAWTPGEDAAHELLAD 237 Query: 222 FCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSW 281 F + V +Y QRD P+ TS+LSP+L G +SP+ W+ + D+ ++ Sbjct: 238 FLDDAVVHYATQRDEPSKPATSRLSPHLRFGEISPQTIWHAARRSGKDV--------ETF 289 Query: 282 LNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNK-DSHLLQAWKQGYTGFPIIDAAM 340 L+E+ WREF H + P + + W D L AW++G TG P++DA M Sbjct: 290 LSEVGWREFAWHTLYDNPDL-HEVNLNRKFDAFPWPPLDEDALLAWEKGETGVPLVDAGM 348 Query: 341 RQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGN 400 R+L G MHNR+RM+ ASFL K+LL+DWRIGEE+F L+D D ASN WQW A G Sbjct: 349 RELWETGTMHNRVRMVVASFLTKNLLIDWRIGEEWFWDTLVDADAASNPFNWQWVAGCGA 408 Query: 401 DSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPI 460 D+ PYFR+FNP Q K+FDP ++R W + PI Sbjct: 409 DAAPYFRVFNPETQRKKFDPDERYVRRWGADDGR-----------------------EPI 445 Query: 461 VDHKKACHHTLNQYYAAK 478 VD + L Y K Sbjct: 446 VDLAETRKAALAAYEHTK 463 >gi|28279917|gb|AAH44204.1| Cry5 protein [Danio rerio] Length = 545 Score = 357 bits (917), Expect = 2e-96, Method: Composition-based stats. Identities = 132/502 (26%), Positives = 202/502 (40%), Gaps = 32/502 (6%) Query: 2 KATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFI 61 KATT + W R LR+ DN AL AA + + +F+ P + I + F+ Sbjct: 23 KATTMSHNTIHWFRKGLRLHDNPALIAALKDC-RHIYPLFLLDPWFPKNTRIGINRWRFL 81 Query: 62 YASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDK 121 +L + SL + + S E L Q ++T+L + E RDK Sbjct: 82 IEALKDLDSSLKKLNSRLFVVRGSP----TEVLPKLFKQWKITRLTFEVDTEPYSQSRDK 137 Query: 122 LLEKRLQH-RVICKSFDDSVLLPPGSILN-HALQMYKVYTPFRKALIQNLVQADLRSLP- 178 + K + V L I++ + + Y + + P Sbjct: 138 EVMKLAKEYGVEVTPKISHTLYNIDRIIDENNGKTPMTYIRLQSVVKAMGHPKKPIPAPT 197 Query: 179 ------VPAIRLTGPVTPSNIPRFFDYPFQAIDP---MFPIGEQNALHILRKFCKEKVY- 228 V IP D +FP GEQ AL L + + + Sbjct: 198 NEDMRGVSTPLSDDHEEKFGIPTLEDLGLDTSSLGPHLFPGGEQEALRRLDEHMERTNWV 257 Query: 229 -YYVEQRDIPA--IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNEL 285 + + + P I T+ LSPY+ G LS R W RL + + S +L Sbjct: 258 CKFEKPKTSPNSLIPSTTVLSPYVRFGCLSARIFWWRLADVYRGKT--HSDPPVSLHGQL 315 Query: 286 IWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNT 345 +WREF+ P+ + +++W+ + L AW++ TGFP IDA M QL Sbjct: 316 LWREFFYTTAVGIPNFNKMEG-NSACVQVDWDNNPEHLAAWREARTGFPFIDAIMTQLRQ 374 Query: 346 IGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVP 404 GW+H+ R A FL + DL + W G++ F LLD D + N G WQW S Sbjct: 375 EGWIHHLARHAVACFLTRGDLWISWEEGQKVFEELLLDSDWSLNAGNWQW-LSASTFFHQ 433 Query: 405 YFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDK------NDLSLNYPL 458 YFR+++P GK+ D G +I+ +LP L PT+YI+ P + +YP Sbjct: 434 YFRVYSPIAFGKKTDKHGDYIKKYLPVLKKFPTEYIYEPWKAPRSVQERAGCIVGKDYPR 493 Query: 459 PIVDHKKACHHTLNQYYAAKKQ 480 PIVDH+ + + AA + Sbjct: 494 PIVDHEVVHKKNILRMKAAYAK 515 >gi|84495534|ref|ZP_00994653.1| Phr [Janibacter sp. HTCC2649] gi|84385027|gb|EAQ00907.1| Phr [Janibacter sp. HTCC2649] Length = 455 Score = 357 bits (917), Expect = 2e-96, Method: Composition-based stats. Identities = 154/471 (32%), Positives = 233/471 (49%), Gaps = 20/471 (4%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 ++WLR DLR D+ AL AA + +++ ++ P W G A + ++ A+L Sbjct: 2 TSVLWLRRDLRRADHPALLAARDAAGGELVVAYVIDPALWA--GAGAVRRAWLAAALEAT 59 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128 ++ + + D E + + + T + R+ RRD+ + L Sbjct: 60 REEFDDGLTLL-------WGDPREVVPALAKRVGATSVHVTRETTPFGRRRDETVASSLA 112 Query: 129 HRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187 + I + PG + N + YKV+TPF KA + +R Sbjct: 113 AQGIEWVETGTPYAVGPGLVQNLSGAPYKVFTPFAKAWRGHGWPDPAPRPSELPLRHVRN 172 Query: 188 VTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSP 247 + + + GE+ A+ R+FC+ + Y RD+PA GTS+LSP Sbjct: 173 DAKATQAIEEALAAPDLPDLPAAGERAAMARWREFCETGLTAYATDRDLPATDGTSRLSP 232 Query: 248 YLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPF 307 YL +GV+ PR DL + GA +++NEL WREFY ++ PS K Sbjct: 233 YLKLGVVHPRTLL-------ADLAGRRGEGAQTYINELGWREFYADVLWHNPSSAW-KDL 284 Query: 308 IPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLV 367 + +++ + ++AW+ G TG+PI+DA MRQL GWMHNR+RMITASFL KDL V Sbjct: 285 RDPLAGMAYDEPADAIEAWQTGTTGYPIVDAGMRQLLAQGWMHNRVRMITASFLTKDLHV 344 Query: 368 DWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRH 427 W +G +F+ L+DGD+ASNN GWQW A TG D+ PYFR+FNP QG++FD G ++R Sbjct: 345 WWPVGARHFLELLIDGDIASNNHGWQWVAGTGTDASPYFRVFNPVTQGEKFDVDGDYVRE 404 Query: 428 WLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478 W+PEL ++ + H P W + + YP IVDH + L + K Sbjct: 405 WVPELAHLAGKAAHQP--WEHPDGYAHGYPQRIVDHAEERREALRRLGELK 453 >gi|226308066|ref|YP_002768026.1| deoxyribodipyrimidine photo-lyase [Rhodococcus erythropolis PR4] gi|226187183|dbj|BAH35287.1| deoxyribodipyrimidine photo-lyase [Rhodococcus erythropolis PR4] Length = 444 Score = 357 bits (916), Expect = 2e-96, Method: Composition-based stats. Identities = 143/470 (30%), Positives = 223/470 (47%), Gaps = 31/470 (6%) Query: 12 VWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQKS 71 VW R DLR+ D L AA ++ + + +F+ + + ++A+L + Sbjct: 2 VWFRRDLRVGDLPILSAAS-DAGGRTLGLFVLDENLLG--PAGSPRQDQLFANLTALDHQ 58 Query: 72 LSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHRV 131 L K +V + D + + ++ + Y RRD + +V Sbjct: 59 LDGKLMVVR-------GDPADVVPRVAESVGAEEVHISADYGPYGRRRDAAVA----EQV 107 Query: 132 ICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPS 191 + + PG + YKV+TP+ + +++ + S +R P Sbjct: 108 ELIATGSPYAVAPGRVTKADGDPYKVFTPYFRQWMEHGWRGPA-STDAQTVRWFDPSDKE 166 Query: 192 NIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSI 251 PR P + +GE AL +++C+ + Y ++R+ P + TS++S L Sbjct: 167 GGPRRVSIPAPSASVSDFVGEVGALEQWKEYCENDLDRYDDERNRPDLDTTSRMSIPLKY 226 Query: 252 GVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWT 311 G + PR DL + GA ++ +L WR+FY ++ P K + Sbjct: 227 GTIHPRTML-------ADLSKRLGDGAQAYRRQLAWRDFYADILFQRPDSAR-KNYDDKF 278 Query: 312 EKIEWN---KDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVD 368 +++ + AW +G TGFPI+DA MRQL WMHNR+RMI ASFLVKDL + Sbjct: 279 DRLRHDGGVDADAAFTAWCEGKTGFPIVDAGMRQLAAENWMHNRVRMIVASFLVKDLHIP 338 Query: 369 WRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHW 428 W G +FMS L+DGDLASN GWQW A +G D+ P+FR+FNP QG++FDP GT++R W Sbjct: 339 WWRGARFFMSHLVDGDLASNQHGWQWTAGSGTDASPFFRVFNPITQGEKFDPDGTYVRRW 398 Query: 429 LPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478 +PEL +VP + +H K ++YP PIVDH L +Y K Sbjct: 399 VPELRDVPGKAVH-----SLKAMRPVDYPDPIVDHAHEREEALRRYGEIK 443 >gi|254462705|ref|ZP_05076121.1| deoxyribodipyrimidine photolyase [Rhodobacterales bacterium HTCC2083] gi|206679294|gb|EDZ43781.1| deoxyribodipyrimidine photolyase [Rhodobacteraceae bacterium HTCC2083] Length = 473 Score = 357 bits (916), Expect = 2e-96, Method: Composition-based stats. Identities = 159/484 (32%), Positives = 233/484 (48%), Gaps = 29/484 (5%) Query: 5 TAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYAS 64 T +VW R DLR++D+ AL AAC ++ VIAVFI G+ A + + Sbjct: 2 TKEKPIIVWFRRDLRVSDHPALSAAC-SARVPVIAVFIKDDIV---DGLGAAPKWRLGKA 57 Query: 65 LLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLE 124 L ++L++ I + D LD+ + ++++R Y+ V RD +++ Sbjct: 58 LEVFTQTLARLNIPLILREGPAGD----VLDALITETDAQGVYWSRLYDPACVTRDTVIK 113 Query: 125 K-RLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSL----PV 179 L + +SF ++ P ++ MYKVYTPF +++ V L P Sbjct: 114 ADLLSKGLEARSFGGHLMFEPWTVETKTGGMYKVYTPFWRSVKDRDVDVPLAVPTSVQPY 173 Query: 180 PAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAI 239 + + + + +GE A L F + V YVE+RDIP+ Sbjct: 174 EGHLESADQSDWALGAAMRRGGVIVARHAQVGEAAAQARLADFIENDVSDYVERRDIPST 233 Query: 240 QGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYP 299 +GTS LS L++G +SP QCW+ L + K + +L EL+WREF HL P Sbjct: 234 RGTSGLSENLALGEISPHQCWHAGMR----ALHEGKDDSEVFLKELVWREFAYHLTHHTP 289 Query: 300 SVCMGKPFIPWTEKIEWNKDSHLLQA--WKQGYTGFPIIDAAMRQLNTIGWMHNRLRMIT 357 + + +K WN+D+ + WKQG TG +DAAMR++ G MHNR RMI Sbjct: 290 HILDSN-WKSDWDKFAWNEDADHPEVIAWKQGRTGIEFVDAAMREMYVTGKMHNRGRMIV 348 Query: 358 ASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKR 417 AS+L K LL W++G+ +F L D D ASN GWQWAA +G D+ PYFR+FNP Q + Sbjct: 349 ASYLTKHLLTHWKVGQAWFDDCLTDWDPASNAMGWQWAAGSGPDASPYFRVFNPVTQLDK 408 Query: 418 FDPQGTFIRHWLPELNNVPTQ----YIHA-PHSW-LDKNDLSLNYPLPIVDHKKACHHTL 471 FD + + R W+ E P Y A P SW L D+ YP PIV+ K L Sbjct: 409 FDRERGYARAWIAEGQGNPPDTATSYFEAIPKSWGLRSTDI---YPKPIVEAAKGRQRAL 465 Query: 472 NQYY 475 + Y Sbjct: 466 DAYQ 469 >gi|47217864|emb|CAG02357.1| unnamed protein product [Tetraodon nigroviridis] Length = 2050 Score = 357 bits (916), Expect = 2e-96, Method: Composition-based stats. Identities = 131/479 (27%), Positives = 196/479 (40%), Gaps = 33/479 (6%) Query: 10 HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69 + W R LR+ DN AL AA + ++ VFI P + + F+ +L + Sbjct: 5 SIHWFRKGLRLHDNPALMAALRDCK-ELYPVFILDPH-LHNKSVGINRCRFLIGALRDLD 62 Query: 70 KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH 129 SL + E Q +VTKL Y E + RD+ + + Sbjct: 63 LSLRNLNSRLFVVRGKPE----EVFPKLFSQWKVTKLTYEYDTEPYSLSRDRTVTTLAEE 118 Query: 130 RVICKSFD-DSVLLPPGSILN-HALQMYKVYTPFRKALIQNLVQADLRSLP-------VP 180 + + L +L + + Y + + + S P V Sbjct: 119 SGVQVVYRVSHTLYDTERVLEENNGKPPLTYNSMQAIVKKLGPPKRPISAPSMDDLKGVS 178 Query: 181 AIRLTGPVTPSNIPRFFDYPFQAI---DPMFPIGEQNALHILRKFCKEKVY--YYVEQRD 235 L IP D + FP GEQ AL L K+ + + + + Sbjct: 179 TPCLEDHEKKYGIPTLEDLGHDPAGLPEEKFPGGEQEALRRLEDQMKKTSWVCNFEKPQT 238 Query: 236 IPAI--QGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRH 293 P T+ LSPY++ G LS R W RL + + K + S +L+WREF+ Sbjct: 239 SPNSLSPSTTVLSPYVTFGCLSARTFWWRLSDVYSGK--KHSAPPVSLHGQLLWREFFYT 296 Query: 294 LMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRL 353 P+ P +++W+ DS L AW++ TGFP IDA M QL GW+H+ Sbjct: 297 ASVGIPNFNKMAD-NPVCTQVDWDTDSEYLAAWREARTGFPFIDAIMTQLRQEGWIHHLA 355 Query: 354 RMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPT 412 R A FL + DL + W G++ F LLDGD A N G WQW S +FR+++P Sbjct: 356 RHAVACFLTRGDLWISWEEGQKVFEELLLDGDWALNAGNWQW-LSASAFFHQFFRVYSPV 414 Query: 413 IQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDK------NDLSLNYPLPIVDHKK 465 GK+ D G +I+ +LP L P QYI+ P + +YP PIV H++ Sbjct: 415 AFGKKTDKNGDYIKKYLPHLKKFPAQYIYEPWKAPQSIQKAAGCIIGKDYPHPIVKHEE 473 >gi|149184696|ref|ZP_01863014.1| hypothetical protein ED21_28298 [Erythrobacter sp. SD-21] gi|148832016|gb|EDL50449.1| hypothetical protein ED21_28298 [Erythrobacter sp. SD-21] Length = 464 Score = 357 bits (916), Expect = 2e-96, Method: Composition-based stats. Identities = 148/485 (30%), Positives = 235/485 (48%), Gaps = 38/485 (7%) Query: 8 SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67 S +VWLR DLR+ D AL+AA VI V++ E+ H +++ SL Sbjct: 3 SPQIVWLRRDLRVADQPALHAAAQAG--PVIPVYVLDDERAGDHAYGGASKVWLHYSLES 60 Query: 68 VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127 + KS + + D+ + L + + R YE + L L Sbjct: 61 LCKSFGNRRSQIVLRKG----DAPQVLAGIADEVGAGCIHAIRHYEPWWKEAEDELRDAL 116 Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187 + +D + LLPPGS+ + YK+YTPF K++++ + D+ P ++ P Sbjct: 117 EEDRKLCLYDGNYLLPPGSVTTGSGDPYKIYTPFSKSMLEVMPPRDVLGEPET---ISSP 173 Query: 188 VTPSNIPRFFDYPFQAIDPMFPIG--------EQNALHILRKFCKEKVYYYVEQRDIPAI 239 D+ P + G E A L + ++V Y E R++P+ Sbjct: 174 DNWPESDALEDWELLPSKPDWAGGIRDFWDFGEDAAHERLE-WWADEVADYDEGRNLPSN 232 Query: 240 QGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYP 299 TS+LSP+L G +SP Q W+ LK+ K G ++ E+IWR++ ++++ +P Sbjct: 233 DITSRLSPHLHWGEISPAQVWHALKD-------KRSDGWKTFAKEIIWRDYAQNVIDQFP 285 Query: 300 SVCMGKPFIPWTEKIEWNKD------SHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRL 353 + + + + E+ W L+ W++G TG+PI+DA MRQL GW+HNR+ Sbjct: 286 NYPR-ESYRDYDERTLWRNPNAGHLIEEDLECWQRGMTGYPIVDAGMRQLWQTGWIHNRV 344 Query: 354 RMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTI 413 RMI ASFLVK LL+DWR GE+++ L+D D +N WQW + TG DS + RI P Sbjct: 345 RMICASFLVKHLLIDWRHGEQWYWDCLVDADYGNNGVNWQWISGTGVDSNMFSRIMAPLS 404 Query: 414 QGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQ 473 Q ++FD +IR ++PEL + IH P +D +YP+ ++ HK+A L Sbjct: 405 QSEKFDA-AAYIREYVPELAELDDDCIHDP-----SDDRRGDYPVKVIGHKEARERALEA 458 Query: 474 YYAAK 478 Y A+K Sbjct: 459 YRASK 463 >gi|225442831|ref|XP_002285327.1| PREDICTED: hypothetical protein [Vitis vinifera] gi|297743390|emb|CBI36257.3| unnamed protein product [Vitis vinifera] Length = 538 Score = 357 bits (916), Expect = 2e-96, Method: Composition-based stats. Identities = 141/508 (27%), Positives = 213/508 (41%), Gaps = 41/508 (8%) Query: 6 AMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHG---------ISAR 56 + S L+W R LRI DN AL A S+ V VF+ P Sbjct: 3 SGSSSLMWFRKGLRIHDNPALQHAAKESNC-VYPVFVIDPYFMEPDPNAFSPGSSRAGLN 61 Query: 57 QSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINE 116 + F+ SL+ + SL Q G + + I L + V +L + + Sbjct: 62 RIRFLLESLVDLDSSLRQLGSRLLVLKGDPGEVIIRCL----KEWEVKRLCFEYDTDPYY 117 Query: 117 VRRDKLLEK-RLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLR 175 D ++ + S L I+ + L A Sbjct: 118 QALDIKVKNYASAAGIEVFSPVSHTLFDSAEIIQKNGGRPPLSYQSFLKLAGQPSWASSP 177 Query: 176 SL----PVPAIRLTGPVTPSNIPRFFDYPFQAI----DPMFPIGEQNALHILRKFCKEKV 227 L +P + G SN+P + ++ I F GE AL LR+ ++K Sbjct: 178 LLTTLSWLPPVGDVGTCEISNVPTVKELGYEEIGQDESTPFKGGESEALKRLRESIRDKE 237 Query: 228 Y--YYVEQRDIPAI---QGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWL 282 + + + + P+ T+ LSPYL G LS R + L + + ++ S S + Sbjct: 238 WVANFEKPKGDPSAFLKPATTVLSPYLKFGCLSSRYFYQCLTDVYKNMKW-HTSPPVSLV 296 Query: 283 NELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQ 342 +L+WR+F+ + P+ K ++I WN D LL AW++ TG+P IDA M Q Sbjct: 297 GQLLWRDFFYTVGFGTPNFDRMKGNR-ICKQIPWNDDDELLAAWREARTGYPWIDAIMVQ 355 Query: 343 LNTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGND 401 L GWMH+ R A FL + DL V W G + F L+D D A NNG W W S + Sbjct: 356 LRKWGWMHHLARHCVACFLTRGDLFVHWEKGRDVFERLLIDSDWAINNGNWLW-LSCSSF 414 Query: 402 SVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWL------DKNDLSLN 455 Y RI++P GK++DP G +IRH+LP L ++P +YI+ P + K + + Sbjct: 415 FYQYNRIYSPISFGKKYDPNGNYIRHFLPILKDMPKEYIYEPWTAPPSIQAKAKCIIGKD 474 Query: 456 YPLPIVDHKKA---CHHTLNQYYAAKKQ 480 YP P+V H A C L + YA K+ Sbjct: 475 YPKPVVCHDSAIKECKRKLAEAYALNKR 502 >gi|124025078|ref|YP_001014194.1| putative DNA photolyase [Prochlorococcus marinus str. NATL1A] gi|123960146|gb|ABM74929.1| putative DNA photolyase [Prochlorococcus marinus str. NATL1A] Length = 504 Score = 357 bits (916), Expect = 2e-96, Method: Composition-based stats. Identities = 163/498 (32%), Positives = 242/498 (48%), Gaps = 39/498 (7%) Query: 10 HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWR-QHGISARQSHFIYASLLQV 68 + W R DLR DN L+ A NS + +I V++ P S ++ F+ SLL++ Sbjct: 17 SIFWHRRDLRFGDNIGLFEASKNSKS-LIGVYVLDPNLLDLNRTTSEAKNWFLGESLLEL 75 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL- 127 QK+ +G + D IE + +++N E E+ RDK + ++L Sbjct: 76 QKNWEIRGSLLLILNG----DPIELISKLAELVHAECIYWNENIEPYEINRDKQIAEKLS 131 Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQN------------------- 168 + + +F D +++ P I + + YKVY PF + I Sbjct: 132 KEKRKVYTFLDQLIVNPSDIKTNNDEPYKVYGPFYRKWIDIINRTKSSDNNLIQTSETAK 191 Query: 169 ----LVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFP--IGEQNALHILRKF 222 L + +L S+ + +I + + P GE ++ L F Sbjct: 192 KLTGLNERELSSIKNSDLNYCITKKSKSIYELLSSNRFSNTSLCPCKPGESESIKQLNSF 251 Query: 223 CKEK-VYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPK-SGAFS 280 + Y + RDIP+++ TS LS LS+G +S R WN + + K + + Sbjct: 252 IHSGVINSYNQARDIPSLENTSNLSAALSLGTISCRAVWNGAQVSKSSTHDEYKINSIDT 311 Query: 281 WLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAM 340 W+ EL WREFY++ + +P + G P+ W +AW G TG PIIDAAM Sbjct: 312 WIKELAWREFYQNALINFPELEKG-PYREKWLNFPWQNRPDWFEAWGDGLTGIPIIDAAM 370 Query: 341 RQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGN 400 RQL GWMHNR RMI ASFLVKDLL+DWR+GE +FM L+DGDLA+NNGGWQW+AS+G Sbjct: 371 RQLKCSGWMHNRCRMIVASFLVKDLLIDWRLGELFFMKSLVDGDLAANNGGWQWSASSGM 430 Query: 401 DSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPI 460 D P RIFNP Q +FD G +IR W+PEL+++ T + + + + +YP PI Sbjct: 431 DPKPM-RIFNPFRQASKFDEDGEYIRKWIPELSHISTPNLLSGEISSAERN---SYPNPI 486 Query: 461 VDHKKACHHTLNQYYAAK 478 ++HK Y K Sbjct: 487 INHKNQTSIFKELYSNIK 504 >gi|183986194|gb|AAI66277.1| LOC100144974 protein [Xenopus (Silurana) tropicalis] Length = 531 Score = 357 bits (915), Expect = 3e-96, Method: Composition-based stats. Identities = 127/494 (25%), Positives = 204/494 (41%), Gaps = 32/494 (6%) Query: 10 HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69 + W R LR+ DN AL AA + A++ +FI P R +S + F+ +L + Sbjct: 5 SIHWFRKGLRLHDNPALLAAMKDC-AELYPIFILDPWFPRNMKVSVNRWRFLIEALKDLD 63 Query: 70 KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK-RLQ 128 ++L + + E + +VT+L + E +RD +EK + Sbjct: 64 ENLKKINSRLFVVRGKP----TEVFPLLFKKWKVTRLTFEVDTEPYSRQRDADVEKLAAE 119 Query: 129 HRVICKSFDDSVLLPPGSIL-NHALQMYKVYTPFRKALIQNLVQADLRSLP-------VP 180 H V + L I+ + + Y F+ L +P Sbjct: 120 HNVQVIQKVSNTLYAIDRIIAENNGKPPLTYVRFQTVLASLGPPKRPVQVPTQENMKDCC 179 Query: 181 AIRLTGPVTPSNIPRFFDYPFQAID---PMFPIGEQNALHILRKFCKEKVY--YYVEQRD 235 + + +P + ++ ++P GE AL L K + + + Sbjct: 180 TLWKSSYNEKYGVPTLEELGQDSLKLGPRLYPGGESEALSRLELHMKRTTWVCNFKKPET 239 Query: 236 IPA--IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRH 293 P T+ LSPY+ G LS R W R+ E + K S +L+WREF+ Sbjct: 240 EPNSLTPSTTVLSPYVKFGCLSARTFWWRIAEIYQGK--KHSDPPVSLHGQLLWREFFYT 297 Query: 294 LMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRL 353 P+ + +++W + LQAW +G TG+P IDA M QL T GW+H+ Sbjct: 298 AGVGIPNFNKMEG-NTVCVQVDWGNNKEHLQAWSEGRTGYPFIDAIMTQLRTEGWIHHLA 356 Query: 354 RMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPT 412 R A FL + DL + W G++ F LLD D + N G WQW S +FR+++P Sbjct: 357 RHAVACFLTRGDLWISWEEGQKVFEELLLDADWSLNAGNWQW-LSASTFFHQFFRVYSPV 415 Query: 413 IQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDK------NDLSLNYPLPIVDHKKA 466 GK+ D G +I+ +LP L P +YI+ P + +YP PIV+H A Sbjct: 416 AFGKKTDKNGDYIKKYLPILKKFPAEYIYEPWKAPRSLQERAGCIIGKDYPKPIVEHDVA 475 Query: 467 CHHTLNQYYAAKKQ 480 + + AA + Sbjct: 476 SKQNIQRMKAAYAR 489 >gi|187608706|ref|NP_001120012.1| hypothetical protein LOC100144974 [Xenopus (Silurana) tropicalis] gi|165970470|gb|AAI58310.1| LOC100144974 protein [Xenopus (Silurana) tropicalis] Length = 531 Score = 357 bits (915), Expect = 3e-96, Method: Composition-based stats. Identities = 128/494 (25%), Positives = 206/494 (41%), Gaps = 32/494 (6%) Query: 10 HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69 + W R LR+ DN AL AA ++ A++ +FI P R +S + F+ +L + Sbjct: 5 SIHWFRKGLRLHDNPALLAAMNDC-AELYPIFILDPWFPRNMKVSVNRWRFLIEALKDLD 63 Query: 70 KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK-RLQ 128 ++L + + E + +VT+L + E +RD +EK + Sbjct: 64 ENLKKINSRLFVVRGKP----TEVFPLLFKKWKVTRLTFEVDTEPYSRQRDADVEKLAAE 119 Query: 129 HRVICKSFDDSVLLPPGSIL-NHALQMYKVYTPFRKALIQNLVQADLRSLP-------VP 180 H V + L I+ + + Y F+ L +P Sbjct: 120 HNVQVIQKVSNTLYAIDRIIAENNGKPPLTYVRFQTVLASLGPPKRPVQVPTQENMKDCC 179 Query: 181 AIRLTGPVTPSNIPRFFDYPFQAID---PMFPIGEQNALHILRKFCKEKVY--YYVEQRD 235 + + +P + ++ ++P GE AL L K + + + Sbjct: 180 TLWKSSYNEKYGVPTLEELGQDSLKLGPRLYPGGESEALSRLELHMKRTTWVCNFKKPET 239 Query: 236 IPA--IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRH 293 P T+ LSPY+ G LS R W R+ E + K S +L+WREF+ Sbjct: 240 EPNSLTPSTTVLSPYVKFGCLSARTFWWRIAEIYQGK--KHSDPPVSLHGQLLWREFFYT 297 Query: 294 LMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRL 353 P+ + I +++W + LQAW +G TG+P IDA M QL T GW+H+ Sbjct: 298 AGVGIPNFNKMEGNIVCV-QVDWGNNKEHLQAWSEGRTGYPFIDAIMTQLRTEGWIHHLA 356 Query: 354 RMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPT 412 R A FL + DL + W G++ F LLD D + N G WQW S +FR+++P Sbjct: 357 RHAVACFLTRGDLWISWEEGQKVFEELLLDADWSLNAGNWQW-LSASTFFHQFFRVYSPV 415 Query: 413 IQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDK------NDLSLNYPLPIVDHKKA 466 GK+ D G +I+ +LP L P +YI+ P + +YP PIV+H A Sbjct: 416 AFGKKTDKNGDYIKKYLPILKKFPAEYIYEPWKAPRSLQERAGCIIGKDYPKPIVEHDVA 475 Query: 467 CHHTLNQYYAAKKQ 480 + + AA + Sbjct: 476 SKQNIQRMKAAYAR 489 >gi|190407676|gb|EDV10943.1| photolyase [Saccharomyces cerevisiae RM11-1a] Length = 565 Score = 357 bits (915), Expect = 3e-96, Method: Composition-based stats. Identities = 161/504 (31%), Positives = 250/504 (49%), Gaps = 46/504 (9%) Query: 7 MSVHLVWLRNDLRITDNKALYAAC--------HNSDAKVIAVFIATPEQWRQHGISARQS 58 +S + W RNDLR+ DN LY + N+ AK+ AV++ + WR H S + Sbjct: 74 VSTVMHWFRNDLRLYDNVGLYKSVALFQQLRQKNAKAKLYAVYVINEDDWRAHMDSGWKL 133 Query: 59 HFIYASLLQVQKSLSQKGIVFQYHQ-------CSNFDDSIEWLDSYCLQQR---VTKLFY 108 FI +L +Q+SL++ I + SN + +E+ C+ T + Sbjct: 134 MFIMGALKNLQQSLAELHIPLLLWEFHTPKSTLSNSKEFVEFFKEKCMNVSSGTGTIITA 193 Query: 109 NRQYEINEVRRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQN 168 N +Y+ +E+ RD L + HR+ K + DS ++ PG I Y V+TP+ K + Sbjct: 194 NIEYQTDELYRDIRLLENEDHRLQLKYYHDSCIVTPGLITTDRGTNYSVFTPWYKKWVLY 253 Query: 169 LVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFP-----------IGEQNALH 217 + + + + + P+ + + + D + E+ AL Sbjct: 254 VNNYKKSTSEICHLHIIEPLKYNETFELKPFQYSLPDEFLQYIPKSKWCLPDVSEEAALS 313 Query: 218 ILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKE----EFVDLLIK 273 L+ F K Y ++D+ + GTS LS Y++ G +S R N+ + + + +K Sbjct: 314 RLKDFLGTKSSKYNNEKDMLYLGGTSGLSVYITTGRISTRLIVNQAFQSCNGQIMSKALK 373 Query: 274 PKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGF 333 S +++ E+ WR+FYRH M +P MG P+ T I+W + + W G TG Sbjct: 374 DNSSTQNFIKEVAWRDFYRHCMCNWPYTSMGMPYRLDTLDIKWENNPVAFEKWCTGNTGI 433 Query: 334 PIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQ 393 PI+DA MR+L G+++NR RMITASFL K+LL+DWR GE +FM L+DGD +SN GGW Sbjct: 434 PIVDAIMRKLLYTGYINNRSRMITASFLSKNLLIDWRWGERWFMKHLIDGDSSSNVGGWG 493 Query: 394 WAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLS 453 + +STG D+ PYFR+FN IQ K++DPQ F++ W+PEL +N Sbjct: 494 FCSSTGIDAQPYFRVFNMDIQAKKYDPQMIFVKQWVPEL-------------ISSENKRP 540 Query: 454 LNYPLPIVDHKKACHHTLNQYYAA 477 NYP P+VD K + L Y A Sbjct: 541 ENYPKPLVDLKHSRERALKVYKDA 564 >gi|118472574|ref|YP_886913.1| deoxyribodipyrimidine photo-lyase [Mycobacterium smegmatis str. MC2 155] gi|118173861|gb|ABK74757.1| deoxyribodipyrimidine photo-lyase [Mycobacterium smegmatis str. MC2 155] Length = 452 Score = 357 bits (915), Expect = 4e-96, Method: Composition-based stats. Identities = 152/472 (32%), Positives = 225/472 (47%), Gaps = 31/472 (6%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 L+W R DLR D+ A+ A DA V+A ++ P R+ ++Y +L + Sbjct: 2 PTLLWFRRDLRCADHPAVLDAAQ-GDADVLACYVLDPRLTGS--SGDRRLAYLYGALRDL 58 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128 ++ L K +V + + + + + + +RRD+ + L Sbjct: 59 REQLGGKLLVTRGRPE-------QRIPELAAAIGAASVHVSGDFSPFGLRRDEAVRAALA 111 Query: 129 H---RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185 V + L+ PG I Y+V+TPF +A + +A S P A Sbjct: 112 DLPGDVGLYATGSPYLVTPGRITKDDGNPYRVFTPFFRAWRDHGWRAPADSGPGSARW-- 169 Query: 186 GPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245 + PS +P + P D P GE A R F +E + Y R+ P + TS++ Sbjct: 170 --IDPSEVPGGAEIPEPPTDLELPAGETAARAQWRAFVRESLRDYSSNRNRPDLDATSRM 227 Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305 S +L G + PR L+ GA ++L EL +R+FY ++ +P Sbjct: 228 SAHLKFGTIHPRTMAADLE------RDGAGDGAAAYLRELAFRDFYAAVLHHWPDSAWWN 281 Query: 306 PFIPWTEKIEWNKDSH---LLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLV 362 + IE ++ L AWK G TGFPI+DA MRQL G++HNR+RMI ASFLV Sbjct: 282 WNRT-FDAIETDEGPDAQRLFDAWKAGMTGFPIVDAGMRQLAATGFVHNRVRMIVASFLV 340 Query: 363 KDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQG 422 KDL + W+ G +F+ QL+DGD+A+N GWQW A G D+ PYFR+FNPT QG++FDP G Sbjct: 341 KDLHLPWQWGARWFLDQLVDGDIANNQHGWQWTAGCGTDAAPYFRVFNPTKQGEKFDPDG 400 Query: 423 TFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQY 474 +IR W+PEL + T P +YP PIVDH + L +Y Sbjct: 401 VYIRRWVPELADPAT----VPDVHRIDGSRPADYPEPIVDHAQERAEALRRY 448 >gi|56696791|ref|YP_167152.1| deoxyribodipyrimidine photolyase [Ruegeria pomeroyi DSS-3] gi|56678528|gb|AAV95194.1| deoxyribodipyrimidine photolyase [Ruegeria pomeroyi DSS-3] Length = 481 Score = 356 bits (914), Expect = 4e-96, Method: Composition-based stats. Identities = 159/479 (33%), Positives = 226/479 (47%), Gaps = 27/479 (5%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 + WLR DLR+ D+ L AA S V+ VFI A + L + Sbjct: 8 IYWLRRDLRLADHPGLAAAAA-SGRPVVPVFIHDESVAALGAAPAFRLGLG---LERFGA 63 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130 +L G + S + L + + +++ R+Y + RD L+ LQ Sbjct: 64 TLGDMGSRLILRRGS----APAVLQALIAETGAGAVWWTREYTPQAITRDSALKTALQQA 119 Query: 131 VI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQN----LVQADLRSLPVPAIRLT 185 I +SF ++L P ++ A YKVYTPF +A+ Q A R P A + Sbjct: 120 GIEARSFGGALLFEPWTVETGAGGFYKVYTPFWRAVSQREVSAPDPAPARVRPPEAWPGS 179 Query: 186 GPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245 ++ + + GE AL L +F + Y RD+PA GTS L Sbjct: 180 EALSDWGLGAPMRRGAAVVATHQAPGEAAALERLDRFIATGIGQYDACRDLPAGDGTSTL 239 Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305 S LS+G + PR W+R E K GA ++L +L+WR+F HLM P + + + Sbjct: 240 SDALSLGEIGPRTLWHRAGE----AAHKGAQGAETFLKQLVWRDFAYHLMYHTPHL-LSE 294 Query: 306 PFIPWTEKIEWNKDSHL--LQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363 + P E W D AW +G TG P++DAAMR++ G MHNR RMI AS+L K Sbjct: 295 NWRPGWEVFPWATDPADPGFVAWTRGRTGVPLVDAAMREMYVTGRMHNRARMIAASYLTK 354 Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423 L+V W++G ++F L D D A+N GWQW A G D+ PYFRIFNP Q K+FDP+G Sbjct: 355 HLMVHWKLGMDWFADCLTDWDPAANAMGWQWVAGCGPDAAPYFRIFNPETQAKKFDPKGR 414 Query: 424 FIRHWLPELNNVPTQ----YIHA-PHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477 + HW+ E P + Y A P SW + D S YP PI+ + L+ Y +A Sbjct: 415 YRNHWIAEGQAEPPRAALSYFDAVPRSWNLRPDAS--YPPPIMALDQGRRRALSAYASA 471 >gi|6324962|ref|NP_015031.1| Phr1p [Saccharomyces cerevisiae S288c] gi|130158|sp|P05066|PHR_YEAST RecName: Full=Deoxyribodipyrimidine photo-lyase, mitochondrial; AltName: Full=DNA photolyase; AltName: Full=Photoreactivating enzyme; Flags: Precursor gi|4176|emb|CAA26944.1| unnamed protein product [Saccharomyces cerevisiae] gi|1420831|emb|CAA99718.1| PHR1 [Saccharomyces cerevisiae] gi|151945461|gb|EDN63704.1| photolyase [Saccharomyces cerevisiae YJM789] gi|207340799|gb|EDZ69038.1| YOR386Wp-like protein [Saccharomyces cerevisiae AWRI1631] gi|256269949|gb|EEU05204.1| Phr1p [Saccharomyces cerevisiae JAY291] gi|259149859|emb|CAY86663.1| Phr1p [Saccharomyces cerevisiae EC1118] gi|285815252|tpg|DAA11145.1| TPA: Phr1p [Saccharomyces cerevisiae S288c] gi|323346400|gb|EGA80689.1| Phr1p [Saccharomyces cerevisiae Lalvin QA23] Length = 565 Score = 356 bits (914), Expect = 4e-96, Method: Composition-based stats. Identities = 161/504 (31%), Positives = 250/504 (49%), Gaps = 46/504 (9%) Query: 7 MSVHLVWLRNDLRITDNKALYAAC--------HNSDAKVIAVFIATPEQWRQHGISARQS 58 +S + W RNDLR+ DN LY + N+ AK+ AV++ + WR H S + Sbjct: 74 VSTVMHWFRNDLRLYDNVGLYKSVALFQQLRQKNAKAKLYAVYVINEDDWRAHMDSGWKL 133 Query: 59 HFIYASLLQVQKSLSQKGIVFQYHQ-------CSNFDDSIEWLDSYCLQQR---VTKLFY 108 FI +L +Q+SL++ I + SN + +E+ C+ T + Sbjct: 134 MFIMGALKNLQQSLAELHIPLLLWEFHTPKSTLSNSKEFVEFFKEKCMNVSSGTGTIITA 193 Query: 109 NRQYEINEVRRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQN 168 N +Y+ +E+ RD L + HR+ K + DS ++ PG I Y V+TP+ K + Sbjct: 194 NIEYQTDELYRDIRLLENEDHRLQLKYYHDSCIVAPGLITTDRGTNYSVFTPWYKKWVLY 253 Query: 169 LVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFP-----------IGEQNALH 217 + + + + + P+ + + + D + E+ AL Sbjct: 254 VNNYKKSTSEICHLHIIEPLKYNETFELKPFQYSLPDEFLQYIPKSKWCLPDVSEEAALS 313 Query: 218 ILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKE----EFVDLLIK 273 L+ F K Y ++D+ + GTS LS Y++ G +S R N+ + + + +K Sbjct: 314 RLKDFLGTKSSKYNNEKDMLYLGGTSGLSVYITTGRISTRLIVNQAFQSCNGQIMSKALK 373 Query: 274 PKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGF 333 S +++ E+ WR+FYRH M +P MG P+ T I+W + + W G TG Sbjct: 374 DNSSTQNFIKEVAWRDFYRHCMCNWPYTSMGMPYRLDTLDIKWENNPVAFEKWCTGNTGI 433 Query: 334 PIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQ 393 PI+DA MR+L G+++NR RMITASFL K+LL+DWR GE +FM L+DGD +SN GGW Sbjct: 434 PIVDAIMRKLLYTGYINNRSRMITASFLSKNLLIDWRWGERWFMKHLIDGDSSSNVGGWG 493 Query: 394 WAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLS 453 + +STG D+ PYFR+FN IQ K++DPQ F++ W+PEL +N Sbjct: 494 FCSSTGIDAQPYFRVFNMDIQAKKYDPQMIFVKQWVPEL-------------ISSENKRP 540 Query: 454 LNYPLPIVDHKKACHHTLNQYYAA 477 NYP P+VD K + L Y A Sbjct: 541 ENYPKPLVDLKHSRERALKVYKDA 564 >gi|37520404|ref|NP_923781.1| cryptochrome [Gloeobacter violaceus PCC 7421] gi|81834455|sp|Q7NMD1|CRYD_GLOVI RecName: Full=Cryptochrome DASH gi|35211397|dbj|BAC88776.1| phrA [Gloeobacter violaceus PCC 7421] Length = 500 Score = 356 bits (914), Expect = 4e-96, Method: Composition-based stats. Identities = 132/493 (26%), Positives = 232/493 (47%), Gaps = 31/493 (6%) Query: 6 AMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGIS-----ARQSHF 60 + LVW RNDLR+ D++ L +A H +A+V+A++ P Q+ + ++ F Sbjct: 2 STKTVLVWYRNDLRVHDHEPLTSALHK-NARVVALYCFDPRQFGKAPFGFEKTGPFRARF 60 Query: 61 IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120 + S+ +++SL Q G + E + + + + + Y+ + E+ + Sbjct: 61 LLESVADLRRSLRQLGSDLLVRRG----HPEEVIPALVSELEIAAVHYHGEVTSEELVVE 116 Query: 121 KLLEKRLQH-RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPV 179 + L+ L V +SF + L+ P + + +++T FRK + + + Sbjct: 117 RDLQAALAPLNVPVRSFWGTTLVHPDDLPFAIEAIPELFTDFRKQV-ERSAAINPPLPAP 175 Query: 180 PAIRLTGPVTPSNIPRFFDYPFQAIDP------MFPIGEQNALHILRKFCKEKV--YYYV 231 + V P IP+ D ++ F GE + L L ++ +K Y Sbjct: 176 AKLPPLPAVDPGEIPQLADLGLESPVTDERAVLQFKGGETSGLARLEEYFWQKSLLKSYK 235 Query: 232 EQRD-IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREF 290 + R+ + +S+ S +L++G LS R +++ + + + EL+WR++ Sbjct: 236 QTRNGMLGADYSSKFSAWLALGCLSARYIHEQVQTYETKRI--KNDSTYWLIFELLWRDY 293 Query: 291 YRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMH 350 +R + A + + + I W +D + W+ G TGFP++DA MR+L G+M Sbjct: 294 FRFIAAKHGDRLFYTAGLRGLD-IPWKEDWERFELWRTGQTGFPLVDANMRELAATGFMS 352 Query: 351 NRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFN 410 NR R ASFL K+L + W +G E+F S+L+D D+ASN G W + A GND+ FR FN Sbjct: 353 NRGRQNVASFLTKNLGIHWHMGAEWFESRLIDYDVASNWGNWNYTAGVGNDARG-FRFFN 411 Query: 411 PTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND------LSLNYPLPIVDHK 464 Q + +DP G +++HWLPEL +P +H P L L ++YP P+VD Sbjct: 412 ILKQARDYDPDGAYVKHWLPELAGLPPARVHEPWKLLPVEQKRFGVRLGVDYPQPVVDLF 471 Query: 465 KACHHTLNQYYAA 477 ++ Y AA Sbjct: 472 QSAAANEAIYNAA 484 >gi|325528961|gb|EGD05987.1| deoxyribodipyrimidine photo-lyase [Burkholderia sp. TJI49] Length = 452 Score = 356 bits (914), Expect = 5e-96, Method: Composition-based stats. Identities = 144/457 (31%), Positives = 226/457 (49%), Gaps = 32/457 (7%) Query: 53 ISARQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQY 112 + Q +++ SL ++ SLS G + + E + S ++ R +F+NR+Y Sbjct: 1 MGGAQKWWLHESLKKLDDSLSALGGSLLVLRGNEH----EAIRSLAVETRAAMVFWNRRY 56 Query: 113 EINEVRRDKLLEKRLQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQ 171 + D ++K L R I +F+ +L P ++ ++V++ + +A ++ Sbjct: 57 SKAQTEMDASIKKDLIGRGIDVSTFNGHLLREPWTVATREGLPFQVFSAYWRAARRDNF- 115 Query: 172 ADLRSLPVPAIRLTGPVT---PSNIPRFFDYPFQAIDP--------MFPIGEQNALHILR 220 LP PA PV+ +++ + Q P + GE+ A H L Sbjct: 116 FPPCPLPAPARITFFPVSRNVSAHVSTLSELALQPSTPDWAEGLRATWRCGEEAAGHQLE 175 Query: 221 KFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKP------ 274 F + Y RD PA + TS+LSPYL G +S RQ W + + Sbjct: 176 AFIENSFSDYAGARDFPATRATSRLSPYLRFGNISARQVWYATLSAVDAMRSRRVVRIDD 235 Query: 275 --KSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTG 332 + +EL WREF +L+ + F + + W D+ L+AW++G TG Sbjct: 236 AKNESLNKFFSELGWREFSYYLLYHCEPL-HQFNFRRQFDAMPWRTDAKALRAWQRGKTG 294 Query: 333 FPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGW 392 +P++DA MR+L GWMHNR+RM+TASFL K LL+DWR GE +F L+D D ASN GW Sbjct: 295 YPLVDAGMRELWHTGWMHNRVRMVTASFLTKHLLIDWREGEAWFWDTLVDADEASNPAGW 354 Query: 393 QWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKN-- 450 QW + +G D+ PYFRIFNP +QG++FD G + R W+PEL+ +P + +H+P + + Sbjct: 355 QWVSGSGADAAPYFRIFNPVLQGEKFDSSGEYTRRWVPELSALPAETLHSPWTASAEALR 414 Query: 451 ----DLSLNYPLPIVDHKKACHHTLNQYYAAKKQSLL 483 L +YP PIVDH+ A L+ QS + Sbjct: 415 EASIALGASYPFPIVDHQVARARALSSVEILNTQSQM 451 >gi|302541523|ref|ZP_07293865.1| deoxyribodipyrimidine photolyase [Streptomyces hygroscopicus ATCC 53653] gi|302459141|gb|EFL22234.1| deoxyribodipyrimidine photolyase [Streptomyces himastatinicus ATCC 53653] Length = 445 Score = 356 bits (913), Expect = 5e-96, Method: Composition-based stats. Identities = 138/466 (29%), Positives = 220/466 (47%), Gaps = 24/466 (5%) Query: 1 MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHF 60 M + S + +DLR+ DN L+AA +D +V+ +F+ + F Sbjct: 1 MTPPSKPSTSIAVFTSDLRLRDNPVLHAALRAAD-RVVPLFVVDRRVAAAGFAVPNRVAF 59 Query: 61 IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120 + L + L ++G D++E + Q ++ RR+ Sbjct: 60 LRDCLADLDAGLRERGGRLIVRTG----DAVEEIRRVAEQVDAGEVHIAGGVSAFAGRRE 115 Query: 121 KLLEKRLQHRVICKSFDDSVLL--PPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLP 178 L + L +VL PG++ + V+TP+ +A ++ + Sbjct: 116 ARLREAL---GGALRVHGAVLTAAEPGTVTPSGKDHFAVFTPYFRAWQGVELRRPFAAP- 171 Query: 179 VPAIRLTGPVTPSNIPRFFDYPFQAIDPMFP-IGEQNALHILRKFCKEKVYYYVEQRDIP 237 +R+ V + + P P GE+ L + + + Y +++D Sbjct: 172 -RGVRVPPGVRSEPLSALSLLGSGSPSPGLPEGGERAGRRRLDAWLRSGLGAYADRQDDL 230 Query: 238 AIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAF 297 A TS+LSPYL G LSP + +R ++ GA +++ +L WR+F+ ++A Sbjct: 231 AGDATSRLSPYLHFGCLSPVELVHRARK-------SGGPGADAFVRQLAWRDFHHQVLAA 283 Query: 298 YPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMIT 357 P + P ++ W D + AWK G TG+PI+DA MRQL GWMHNR R++ Sbjct: 284 RPD-ASHTDYRPRGDR--WRSDDAAVAAWKAGRTGYPIVDAGMRQLAAEGWMHNRARLLV 340 Query: 358 ASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKR 417 ASFL K L VDWR+G +F+ L+DGD+A+N WQW A TG D+ P R+ NP Q +R Sbjct: 341 ASFLTKTLYVDWRVGARHFLDLLVDGDVANNQLNWQWVAGTGTDTRP-NRVLNPLAQARR 399 Query: 418 FDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDH 463 FDP GT++R W+PEL ++P + +H P + D +L YP PIVD Sbjct: 400 FDPDGTYVRRWIPELADLPGRQVHTPWTLPDPERTALPYPPPIVDL 445 >gi|312138453|ref|YP_004005789.1| deoxyribodipyrimidine photolyase [Rhodococcus equi 103S] gi|311887792|emb|CBH47104.1| putative deoxyribodipyrimidine photolyase [Rhodococcus equi 103S] Length = 443 Score = 356 bits (913), Expect = 5e-96, Method: Composition-based stats. Identities = 148/474 (31%), Positives = 217/474 (45%), Gaps = 35/474 (7%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M+ LVW R DLR+ D L AA + + +F+ + F+Y SL Sbjct: 1 MTQSLVWFRRDLRVGDLPTLSAAGERA----LGLFVLDDRLLG--PSGGPRRDFLYRSLS 54 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 + + L + +V + D +E + ++ + Y RD + Sbjct: 55 ALDEQLDGRLLVVR-------GDPVEVVPLVAKAIGAQEVHVSADYGPYGRERDAAVA-- 105 Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 RV + + PG + YKV+TP+ K + + +A + + Sbjct: 106 --ERVDLVTTGSPYAVAPGRVTKDDGSPYKVFTPWFKRWLDHGWRAPASTGADTLDWIDP 163 Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246 + R A P GE AL FC + + Y +RD P + TS++S Sbjct: 164 DDVDVSKARNAIPAPDASGPA--AGEAAALERWSAFCDDDLIRYDAERDRPDLDTTSRMS 221 Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP 306 YL G + PR DL K GA + ++ WR+FY ++ P + Sbjct: 222 VYLKFGNIHPRTML-------ADLARKRSHGAEQYRRQVAWRDFYADILFQRPDSAR-RN 273 Query: 307 FIPWTEKIEWNKDSH---LLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363 + + + + + AW +G TGFPI+DA MRQL + GWMHNR+RMI ASFLVK Sbjct: 274 YDAKFDAMRHDTGRDADAMFAAWCEGRTGFPIVDAGMRQLVSEGWMHNRVRMIVASFLVK 333 Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423 DL + W G +FM L+DGDLASN GWQW A +G D+ PYFR+FNPT QG++FDP G Sbjct: 334 DLHLPWWRGARFFMQHLVDGDLASNQHGWQWTAGSGTDASPYFRVFNPTGQGEKFDPTGD 393 Query: 424 FIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477 ++R W+PEL V + +H K+ YP PIVDH + L +Y A Sbjct: 394 YVRRWVPELRGVRGKAVHT-----LKDARPEAYPDPIVDHAEERREALARYGAL 442 >gi|156354106|ref|XP_001623243.1| predicted protein [Nematostella vectensis] gi|156209922|gb|EDO31143.1| predicted protein [Nematostella vectensis] Length = 524 Score = 356 bits (913), Expect = 5e-96, Method: Composition-based stats. Identities = 142/486 (29%), Positives = 224/486 (46%), Gaps = 30/486 (6%) Query: 1 MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQ------HGIS 54 M + + LRNDLR DN+AL A N+D V+ ++ P+ ++ + Sbjct: 1 MATSKTQKTVICLLRNDLRYHDNEALLWAHKNAD-FVLPLYCFDPDHYKTTWRFSLPKTA 59 Query: 55 ARQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEI 114 ++ F+ S+ ++ +L G QC + + + VT + + ++ Sbjct: 60 QYRAKFLLESVTDLRSTLQIHGSNLIIRQCQPLEAVTKLTELLKPVAPVTSIVFQQEVTY 119 Query: 115 NEVRRDKLLEKRLQHRVIC-KSFDDSVLLPPGSILNHALQMYKVYTPFRKAL-----IQN 168 E+ +K L + + I + S L I A + YT FRK + ++N Sbjct: 120 EELNVEKALVEFCKKSGIHMHTIWGSTLFHKDDIPYKAKTVPDTYTQFRKGVENQSTVRN 179 Query: 169 LVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAID--PMFP--IGEQNALHILRKFCK 224 L+ P+P ++ P D + +D FP GEQ AL L + Sbjct: 180 LIDMPKNLKPLPPVKGELGTIPDLKSLLNDSEIKEVDQRSAFPFMGGEQEALSRLGSYLW 239 Query: 225 --EKVYYYVEQRD-IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSW 281 + V Y E R+ + +++LSP+L+ G LSPR ++R+K+ + + + Sbjct: 240 GTDSVAKYKETRNGLLGENYSTKLSPWLANGSLSPRMVYHRIKQYEEERVANH--STYWV 297 Query: 282 LNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMR 341 L ELIWR++++ + Y + I + + W D + W +G TG P +DA MR Sbjct: 298 LFELIWRDYFKFVCLKYGDRVFYRSGI-MGKSLPWKHDKMTFKLWCEGKTGVPFVDANMR 356 Query: 342 QLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGND 401 +L GWM NR R ASFL+KDL +DWR G E+F S LLD D+ SN G W +AA GND Sbjct: 357 ELKETGWMSNRGRQNVASFLIKDLGLDWRYGAEWFESLLLDHDVCSNYGNWNYAAGIGND 416 Query: 402 SVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKN------DLSLN 455 R FN QG +DP G +I+ W+PEL +P +H P + +L + Sbjct: 417 PRE-GRKFNMVKQGLDYDPDGDYIKTWVPELAKIPGAKVHVPWTLKPGELRSSGVELGVT 475 Query: 456 YPLPIV 461 YP PIV Sbjct: 476 YPNPIV 481 >gi|255261881|ref|ZP_05341223.1| deoxyribodipyrimidine photo-lyase [Thalassiobium sp. R2A62] gi|255104216|gb|EET46890.1| deoxyribodipyrimidine photo-lyase [Thalassiobium sp. R2A62] Length = 473 Score = 356 bits (913), Expect = 5e-96, Method: Composition-based stats. Identities = 147/483 (30%), Positives = 221/483 (45%), Gaps = 35/483 (7%) Query: 8 SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67 S ++W R DLR+ D+ AL AA ++ +FI Q + F S+ Sbjct: 5 SPIILWFRRDLRLGDHPALAAAVATG-RPIVPLFIHDEVVEGQGAAPKMRLGF---SVEA 60 Query: 68 VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127 + +SL G + +++ L + ++++R Y+ RD ++ L Sbjct: 61 LDRSLHGTGSRLVLRRG----RALDVLRKVITETGAGAVYWSRLYDPLSKERDTAVKSAL 116 Query: 128 QH-RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 + V +SF +L P ++ YKV+TP KA+ DL RL Sbjct: 117 KDDGVTAQSFAGHLLFEPWTVETKTGGFYKVFTPMWKAVR----GTDLPVSTPAPNRLEA 172 Query: 187 PVTPSNIPRFFDY--------PFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPA 238 P D+ + +GEQ AL L F E+V Y RD+P Sbjct: 173 PQEWPASDALADWAMDAAMMRGRDVLAAFCTVGEQAALSRLETFINERVGNYQTNRDLPR 232 Query: 239 IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFY 298 + GTS+LS L+ G ++P CW+ L + A +L EL+WREF HL+ Sbjct: 233 VDGTSRLSENLTYGEIAPLTCWHAGWA----ALNHGDADAEVFLKELVWREFAYHLVHHT 288 Query: 299 PSVCMGKPFIPWTEKIEWNKDSHLLQA--WKQGYTGFPIIDAAMRQLNTIGWMHNRLRMI 356 P + + P + WN D +A WKQG TG +DAAMR++ G MHNR RMI Sbjct: 289 PHITTDN-WKPDWDGFAWNTDETDPKAVAWKQGRTGIRFVDAAMREMYVTGTMHNRGRMI 347 Query: 357 TASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGK 416 AS+L K L+ W+IG ++F L+D D ASN GWQW++ +G D+ PYFR+FNP Q Sbjct: 348 VASYLTKHLMCHWKIGLKWFEDCLVDWDPASNAMGWQWSSGSGPDATPYFRVFNPVTQLD 407 Query: 417 RFDPQGTFIRHWLPELNNVPT----QYIHA-PHSWLDKNDLSLNYPLPIVDHKKACHHTL 471 +FD ++ W+ E + P +Y A P W K + +YP P+V + L Sbjct: 408 KFDKNREYVDRWIAEGRSQPHADALRYFDAVPEHWAIKP--TDDYPAPVVSAEDGRKAAL 465 Query: 472 NQY 474 + Y Sbjct: 466 DAY 468 >gi|329115122|ref|ZP_08243877.1| Deoxyribodipyrimidine photo-lyase [Acetobacter pomorum DM001] gi|326695565|gb|EGE47251.1| Deoxyribodipyrimidine photo-lyase [Acetobacter pomorum DM001] Length = 522 Score = 356 bits (913), Expect = 6e-96, Method: Composition-based stats. Identities = 159/486 (32%), Positives = 228/486 (46%), Gaps = 20/486 (4%) Query: 1 MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHF 60 M + + LV LR+D R+ DN AL+AAC V+ ++ Q + R + + Sbjct: 50 MVNAPSPAPVLVLLRDDYRVADNPALHAACATGQ-PVLCAYVQDAAL--QDAPTTRIAGW 106 Query: 61 IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120 A+ Q+ SL ++G + + T +F+NR+Y+ + D Sbjct: 107 AQAACAQLATSLHKQGQTLLMLSGPTRLS----VPALAQAINATDVFWNRRYDAPGIAAD 162 Query: 121 KLLEKRLQ-HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPV 179 + L+ V S +L P +I A Q Y+V+T + +A P Sbjct: 163 TDVHASLKKQGVTVHSCTGRLLFEPWAIRTQAGQPYRVFTAWWRAARDLPEPPPPLPAPD 222 Query: 180 PAIRLTGPVTPSNIPRFFDYPFQAID-----PMFPIGEQNALHILRKFCKEKVYYYVEQR 234 + P N+P P + GEQ A L +F + + Y QR Sbjct: 223 MHGKSYVPARALNLPEGVRLARVGTQMPPALPGWTSGEQCAHTNLHRFIENALEDYETQR 282 Query: 235 DI-PAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRH 293 D A GTS LSPY+ +G +S RQ W+ ++ L + + A +L EL WR+F Sbjct: 283 DRTDATHGTSLLSPYIRVGQISVRQIWHAIR-HAAHLHPQLATDAEKFLAELGWRDFAWM 341 Query: 294 LMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRL 353 M P + + + W D+ L AW+QG TGFP++DA MRQL GWMHNR+ Sbjct: 342 QMFTTPDLAT-RNLRAEFNHMPWRTDATDLAAWQQGQTGFPLVDAGMRQLARTGWMHNRV 400 Query: 354 RMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTI 413 RM+ ASFL K LL DW+ GE +F + LLD D A N WQW A TG D+ P+FRIFNP Sbjct: 401 RMVVASFLTKHLLTDWQKGERWFYAHLLDADAAVNAMNWQWGAGTGIDAAPWFRIFNPVG 460 Query: 414 QGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQ 473 Q +++DP G +IR W+PEL + + IH P + LNYP PIVD K L Sbjct: 461 QSEKYDPLGQYIRTWVPELAALDNKTIHTPWKSAQR----LNYPPPIVDLKLGRLRALEC 516 Query: 474 YYAAKK 479 + K Sbjct: 517 WKNLPK 522 >gi|301622212|ref|XP_002940429.1| PREDICTED: cryptochrome-1-like [Xenopus (Silurana) tropicalis] Length = 531 Score = 355 bits (912), Expect = 7e-96, Method: Composition-based stats. Identities = 126/494 (25%), Positives = 204/494 (41%), Gaps = 32/494 (6%) Query: 10 HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69 + W R LR+ DN AL AA + A++ +FI P R +S + F+ +L + Sbjct: 5 SIHWFRKGLRLHDNPALLAAMKDC-AELYPIFILDPWFPRNMKVSVNRWRFLIEALKDLD 63 Query: 70 KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK-RLQ 128 ++L + + E + +VT+L + E +RD +EK + Sbjct: 64 ENLKKINSRLFVVRGKP----TEVFPLLFKKWKVTRLTFEVDTEPYSRQRDADVEKLAAE 119 Query: 129 HRVICKSFDDSVLLPPGSIL-NHALQMYKVYTPFRKALIQNLVQADLRSLP-------VP 180 H V + L I+ + + Y F+ L +P Sbjct: 120 HNVQVIQKVSNTLYAIDRIIAENNGKPPLTYVRFQTVLALLGPPKRPVQVPTQENMKDCC 179 Query: 181 AIRLTGPVTPSNIPRFFDYPFQAID---PMFPIGEQNALHILRKFCKEKVY--YYVEQRD 235 + + +P + ++ ++P GE AL L K + + + Sbjct: 180 TLWKSSYNEKYGVPTLEELGQDSLKLGPRLYPGGESEALSRLELHMKRTTWVCNFKKPET 239 Query: 236 IPA--IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRH 293 P T+ LSPY+ G LS R W R+ + + K S +L+WREF+ Sbjct: 240 EPNSLTPSTTVLSPYVKFGCLSARTFWWRIADIYQGK--KHSDPPVSLHGQLLWREFFYT 297 Query: 294 LMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRL 353 P+ + +++W + LQAW +G TG+P IDA M QL T GW+H+ Sbjct: 298 AGVGIPNFNKMEG-NTVCVQVDWGNNKEHLQAWSEGRTGYPFIDAIMTQLRTEGWIHHLA 356 Query: 354 RMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPT 412 R A FL + DL + W G++ F LLD D + N G WQW S +FR+++P Sbjct: 357 RHAVACFLTRGDLWISWEEGQKVFEELLLDADWSLNAGNWQW-LSASTFFHQFFRVYSPV 415 Query: 413 IQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDK------NDLSLNYPLPIVDHKKA 466 GK+ D G +I+ +LP L P +YI+ P + +YP PIV+H A Sbjct: 416 AFGKKTDKNGDYIKKYLPILKKFPAEYIYEPWKAPRSLQERAGCIIGKDYPKPIVEHDVA 475 Query: 467 CHHTLNQYYAAKKQ 480 + + AA + Sbjct: 476 SKQNIQRMKAAYAR 489 >gi|297195865|ref|ZP_06913263.1| deoxyribodipyrimidine photolyase [Streptomyces pristinaespiralis ATCC 25486] gi|197720806|gb|EDY64714.1| deoxyribodipyrimidine photolyase [Streptomyces pristinaespiralis ATCC 25486] Length = 457 Score = 355 bits (912), Expect = 8e-96, Method: Composition-based stats. Identities = 143/478 (29%), Positives = 230/478 (48%), Gaps = 26/478 (5%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M+V +V +DLR+ D+ L AA +D +V+ +F+ P + + F+ L Sbjct: 1 MTVAVVLFTSDLRLHDHPPLRAALRAAD-EVVPLFVLDPGIGAAGFEAPNRCAFLADCLA 59 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 + SL ++G + + + + ++ RR++LL Sbjct: 60 DLDASLRERGGRLVVRSGPV----AQQVGAIAAECGAGEVHMAAGVTRYARRREELLRTV 115 Query: 127 LQHRVICKSFDDSVL--LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL 184 L+ R D+V+ + PG++ Y V+TP+ + Q ++ R+ + + Sbjct: 116 LRERGATLRTHDAVITVVAPGAVTPAGSDHYSVFTPYFRRWSQQRLRDPCRAPRTVPVPV 175 Query: 185 TGPVTPSNIPRFFDYPFQAIDPMFP-IGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS 243 T P I P P GE + + Y Q D A TS Sbjct: 176 TMHGEPLPSRDA----VPRISPGLPAGGESAGRKRFHDWEASGLDAYDVQHDSLAGDMTS 231 Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCM 303 +LSPYL G LSP + + +GA +++ +L WR+F+ +MA P+ + Sbjct: 232 RLSPYLHFGALSPLELV-------REASAHGGTGAEAFVRQLCWRDFHHQVMAARPASSV 284 Query: 304 GKPFIPWTEKIEWNKDS-HLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLV 362 + + P ++ D+ + AWK+G TGFP++DAAMRQL GWMHNR R++ ASFL Sbjct: 285 -EDYRPRHDRWRTQDDAAEDITAWKEGATGFPVVDAAMRQLRHEGWMHNRARLLVASFLT 343 Query: 363 KDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQG 422 K L VDWRIG YF+ +L+DGD+ +N WQW A TG D+ P+ R+ NP +QGKRFDP+G Sbjct: 344 KTLYVDWRIGARYFLDRLVDGDIVNNQLNWQWVAGTGTDTRPH-RVLNPVVQGKRFDPRG 402 Query: 423 TFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQ 480 ++R W+PEL +P +H P L+YP P++D + L ++ A+ + Sbjct: 403 EYVRRWVPELREIPDGAVHEPWRLPADRRARLDYPDPLIDLAEG----LARFKHARGR 456 >gi|268317159|ref|YP_003290878.1| Deoxyribodipyrimidine photo-lyase [Rhodothermus marinus DSM 4252] gi|262334693|gb|ACY48490.1| Deoxyribodipyrimidine photo-lyase [Rhodothermus marinus DSM 4252] Length = 486 Score = 355 bits (911), Expect = 8e-96, Method: Composition-based stats. Identities = 153/484 (31%), Positives = 224/484 (46%), Gaps = 22/484 (4%) Query: 7 MSVHLVWLR-NDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASL 65 M + L+ DLR+ +N AL AA ++ +FI R A + +++ SL Sbjct: 1 MPITLLLFTPGDLRLAENPALDAALRTGH-PIVPLFIWPRRAERFERPGAARRWWLHHSL 59 Query: 66 LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125 + L ++G +D E L V L +N +E R + Sbjct: 60 AALDAELQRRGSRLILRVA---EDPAEVLIQLLETLPVAALCWNLPLLPHERRLASSIAP 116 Query: 126 RLQHR-VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL 184 L+ R + LL + + +Y+V+TPF KAL Q + + +P R+ Sbjct: 117 VLRRRSIRLIETVGRTLLDLEQLRTKSGDVYRVFTPFWKALRQQYI---PPAPFLPPARI 173 Query: 185 TGPVTPSNIPRFF--------DYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDI 236 P + + D+ + I + GE A LR F + +Y RD Sbjct: 174 PAPSSWPDSDTLESLALLPRPDWASETIASHWLPGEAAAWSTLRTFLAYGLPHYDRARDR 233 Query: 237 PAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMA 296 + TS+LSPYL+ G +SP W + E + ++ +L WREF +L+ Sbjct: 234 LDQEATSKLSPYLANGEISPHLLWRVVGEAQRAGVS--SKAVEAFRRQLAWREFGYYLLY 291 Query: 297 FYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMI 356 +P +P P W ++ L+AW+ G TG P+IDAAMRQL GWMHNR R++ Sbjct: 292 HFPE-TTHRPLRPEWSDFPWRTEAPELEAWQHGRTGIPVIDAAMRQLWQSGWMHNRTRLL 350 Query: 357 TASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGK 416 AS L K+L + W G E+F L+D DLA+N GWQW A G D+ PYFRIFNP +Q K Sbjct: 351 VASLLTKNLRIHWLRGAEWFWDTLVDADLANNTLGWQWTAGCGADAAPYFRIFNPVLQSK 410 Query: 417 RFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDL--SLNYPLPIVDHKKACHHTLNQY 474 +FDP+G +IR WLPEL +P IHAP ++ + YP PIV + L Y Sbjct: 411 KFDPEGRYIRRWLPELGRLPAPCIHAPWEAPSCAEMLREIGYPSPIVSLMDSREEALALY 470 Query: 475 YAAK 478 K Sbjct: 471 ENWK 474 >gi|55251265|emb|CAH69046.1| cryptochrome 1a [Danio rerio] Length = 556 Score = 355 bits (911), Expect = 9e-96, Method: Composition-based stats. Identities = 118/494 (23%), Positives = 190/494 (38%), Gaps = 31/494 (6%) Query: 10 HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69 + W R LR+ DN +L + + + V V+I P + + F+ L + Sbjct: 5 TVHWFRKGLRLHDNPSLRDSILGAHS-VRCVYILDPWFAGSSNVGISRWRFLLQCLEDLD 63 Query: 70 KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH 129 SL + + D + + +L Y E RD ++K Sbjct: 64 ASLRKLNSRLFVIRGQPTD----VFPRLFKEWNINRLSYEYDSEPFGKERDAAIKKLANE 119 Query: 130 RVICKSFD-DSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSL--------PVP 180 + L I+ + + LI + + + P Sbjct: 120 AGVEVIVRISHTLYDLDKIIELNGGQSPLTYKRFQTLISRMEAVETPAETITAEVMGPCT 179 Query: 181 AIRLTGPVTPSNIPRFFDYPFQA---IDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIP 237 +P + F ++P GE AL L + + K + +R Sbjct: 180 TPLSDDHDEKFGVPSLEELGFDTEGLSSAVWPGGETEALTRLERHLERKAWVANFERPRM 239 Query: 238 AIQGT----SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRH 293 + LSPYL G LS R + +L + + + K S S +L+WREF+ Sbjct: 240 NANSLLASPTGLSPYLRFGCLSCRLFYFKLTDLYRKVK-KNSSPPLSLYGQLLWREFFYT 298 Query: 294 LMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRL 353 P + P +I W+K+ L W +G TGFP IDA M QL GW+H+ Sbjct: 299 AATNNPRFDKMEG-NPICVQIPWDKNPEALAKWAEGRTGFPWIDAIMTQLRQEGWIHHLA 357 Query: 354 RMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPT 412 R A FL + DL + W G + F LLD D + N G W W S + +F + P Sbjct: 358 RHAVACFLTRGDLWISWEEGMKVFEELLLDADWSVNAGSWMW-LSCSSFFQQFFHCYCPV 416 Query: 413 IQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLD------KNDLSLNYPLPIVDHKKA 466 G+R DP G +IR +LP L P +YI+ P + + K + ++YP+P+V H +A Sbjct: 417 SFGRRTDPNGDYIRRYLPVLRGFPAKYIYDPWNAPESVQKAAKCIIGVHYPMPMVHHAEA 476 Query: 467 CHHTLNQYYAAKKQ 480 + + +Q Sbjct: 477 SRLNIERMKQIYQQ 490 >gi|224073768|ref|XP_002304163.1| predicted protein [Populus trichocarpa] gi|222841595|gb|EEE79142.1| predicted protein [Populus trichocarpa] Length = 540 Score = 355 bits (911), Expect = 1e-95, Method: Composition-based stats. Identities = 141/512 (27%), Positives = 220/512 (42%), Gaps = 42/512 (8%) Query: 1 MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHG-------- 52 M A+ + S ++W R LRI DN AL A SD V VF+ P Sbjct: 1 MAASGSGS--IIWFRKGLRIHDNPALEYASKGSD-FVYPVFVIDPHYMEPDPKAFSPGSR 57 Query: 53 -ISARQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQ 111 + F+ SL+ + SL + G + + L + V KL + Sbjct: 58 LAGLNRIRFLLESLVDLDTSLKKLGSRLLILRGEPG----QVLTRCLKEWGVKKLCFEYD 113 Query: 112 YEINEVRRDKLLEK-RLQHRVICKSFDDSVLLPPGSIL-NHALQMYKVYTPFRKALIQNL 169 + + D +++ + S L P I+ + + Y F K Q Sbjct: 114 TDPHYQALDIRVKEYASAAGIEVFSPVSHTLFNPADIIQRNGGKPPLTYQSFLKLAGQPS 173 Query: 170 VQADLRSLPV---PAIRLTGPVTPSNIPRFFDYPFQAIDPMF---PIGEQNALHILRKFC 223 + + P + G S +P D + I+ + GE AL L++ Sbjct: 174 WASSPLLTSISSLPPVGDVGSCEISEVPTIKDLGYGDIEQEWIPFRGGESEALKRLKESI 233 Query: 224 KEKVY--YYVEQRDIPAI---QGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGA 278 +K + + + + P+ T+ LSPYL G LS R + L++ + ++ K S Sbjct: 234 SDKEWVANFEKPKGNPSAFVKPATTVLSPYLKFGCLSSRYFYQCLQDVYKNVQ-KHTSPP 292 Query: 279 FSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDA 338 S +L+WR+F+ + P+ + ++I WN D LL AW++ TG+P IDA Sbjct: 293 VSLAGQLLWRDFFYTVAFGTPNFDRMEG-NKLCKQIPWNDDDELLAAWREARTGYPWIDA 351 Query: 339 AMRQLNTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAAS 397 M QL GWMH+ R A FL + DL + W G + F L+D D A NNG W W S Sbjct: 352 IMVQLRKWGWMHHLARHSVACFLTRGDLFLHWERGRDVFERLLIDSDWAINNGNWLW-LS 410 Query: 398 TGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWL------DKND 451 + Y RI++P GK++DP G +IRH+LP L ++P +YI+ P + K Sbjct: 411 CSSFFYQYNRIYSPISFGKKYDPNGDYIRHFLPVLKDMPKEYIYEPWTAPPGIQRKAKCI 470 Query: 452 LSLNYPLPIVDHKKA---CHHTLNQYYAAKKQ 480 + +YP P+V H A C L + YA K+ Sbjct: 471 IGRDYPKPVVYHDSASKECKRKLAEAYALNKK 502 >gi|89054480|ref|YP_509931.1| deoxyribodipyrimidine photo-lyase type I [Jannaschia sp. CCS1] gi|88864029|gb|ABD54906.1| deoxyribodipyrimidine photo-lyase type I [Jannaschia sp. CCS1] Length = 468 Score = 355 bits (911), Expect = 1e-95, Method: Composition-based stats. Identities = 148/479 (30%), Positives = 225/479 (46%), Gaps = 28/479 (5%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 + W+R D R++DN AL AAC V+ +FI G A + + Sbjct: 2 TTIYWVRRDFRLSDNPALVAACERG--AVVPLFICDEVIE---GHGAAPKWRLGLGVEAF 56 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128 ++L G + D++ L + + +NR Y+ + +RD+ ++ L+ Sbjct: 57 AEALHAVGSKLILRRG----DALPTLRAVIADVSANAVHWNRLYDPDSRKRDEAVKAALK 112 Query: 129 H-RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIR---L 184 V S VL P ++ YKVYTPF K + L + +PA Sbjct: 113 EDGVEAISHKGHVLFEPWTVETKTGGYYKVYTPFWKMVRDRSPGEALAAPKIPAPDTWPA 172 Query: 185 TGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244 + ++ ++ + + + + P +GEQ A L F + Y + RD A GTS Sbjct: 173 SDDLSDWHLGKAMNRGAEVVAPHLNVGEQAAQGRLGAFIGNGIDDYADARDNLAKNGTSL 232 Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304 LS L+ G +S RQCW+ + D K GA ++L E++WR+F HL+ P + Sbjct: 233 LSENLAYGEISARQCWHAGQRAMAD----GKPGAETFLKEVVWRDFAYHLVHHTPRITTA 288 Query: 305 KPFIPWTEKIEWNKDSHLLQA--WKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLV 362 + E WN D + WKQG TG ++DAAMR++ G MHNR RM+ AS+L Sbjct: 289 N-WREEWEAFPWNTDPDTPEVTAWKQGRTGMAVVDAAMREMYVTGRMHNRARMLVASYLT 347 Query: 363 KDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQG 422 K L+ DW+IG ++F L+D D ASN GWQW+A +G D+ PYFR+FNP Q ++FD G Sbjct: 348 KHLMTDWKIGMDWFEECLVDWDPASNAMGWQWSAGSGPDATPYFRVFNPETQAEKFDKAG 407 Query: 423 TFIRHWLPELNNVPTQYIHA-----PHSWLDKNDLSLNYP-LPIVDHKKACHHTLNQYY 475 + WL E+ P A P +W D ++ YP PIV + L+ Y Sbjct: 408 RYRMRWLAEITGKPQDTASAYFDAVPRAWGL--DPTMGYPSAPIVTASEGRKRALDAYE 464 >gi|18858461|ref|NP_571864.1| cryptochrome 1a isoform 2 [Danio rerio] gi|8698584|dbj|BAA96846.1| cryptochrome 1a [Danio rerio] Length = 556 Score = 355 bits (911), Expect = 1e-95, Method: Composition-based stats. Identities = 120/497 (24%), Positives = 193/497 (38%), Gaps = 37/497 (7%) Query: 10 HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69 + W R LR+ DN +L + + + V V+I P + + F+ L + Sbjct: 5 TVHWFRKGLRLHDNPSLRDSILGAHS-VRCVYILDPWFAGSSNVGISRWRFLLQCLEDLD 63 Query: 70 KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH 129 SL + + D + + +L Y E RD ++K Sbjct: 64 ASLRKLNSRLFVIRGQPTD----VFPRLFKEWNINRLSYEYDSEPFGKERDAAIKKLANE 119 Query: 130 RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSL------------ 177 + S L L+ +++ +P Q L+ + Sbjct: 120 AGVEVIVRISHTLY---DLDKIIELNGGQSPLTYKRFQTLISRMEAVVTPAETITAEVMG 176 Query: 178 PVPAIRLTGPVTPSNIPRFFDYPFQA---IDPMFPIGEQNALHILRKFCKEKVYYYVEQR 234 P +P + F ++P GE AL L + + K + +R Sbjct: 177 PCTTPLSDDHDEKFGVPSLEELGFDTEGLSSAVWPGGETEALTRLERHLERKAWVANFER 236 Query: 235 DIPAIQGT----SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREF 290 + LSPYL G LS R + +L + + + K S S +L+WREF Sbjct: 237 PRMNANSLLASPTGLSPYLRFGCLSCRLFYFKLTDLYRKVK-KNSSPPLSLYGQLLWREF 295 Query: 291 YRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMH 350 + P + P +I W+K+ L W +G TGFP IDA M QL GW+H Sbjct: 296 FYTAATNNPRFDKMEG-NPICVQIPWDKNPEALAKWAEGRTGFPWIDAIMTQLRQEGWIH 354 Query: 351 NRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIF 409 + R A FL + DL + W G + F LLD D + N G W W S + +F + Sbjct: 355 HLARHAVACFLTRGDLWISWEEGMKVFEELLLDADWSVNAGSWMW-LSCSSFFQQFFHCY 413 Query: 410 NPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLD------KNDLSLNYPLPIVDH 463 P G+R DP G +IR +LP L P +YI+ P + + K + ++YP+P+V H Sbjct: 414 CPVSFGRRTDPNGDYIRRYLPVLRGFPAKYIYDPWNAPESVQKAAKCIIGVHYPMPMVHH 473 Query: 464 KKACHHTLNQYYAAKKQ 480 +A + + +Q Sbjct: 474 AEASRLNIERMKQIYQQ 490 >gi|108799005|ref|YP_639202.1| deoxyribodipyrimidine photo-lyase type I [Mycobacterium sp. MCS] gi|119868120|ref|YP_938072.1| deoxyribodipyrimidine photo-lyase type I [Mycobacterium sp. KMS] gi|126434608|ref|YP_001070299.1| deoxyribodipyrimidine photo-lyase type I [Mycobacterium sp. JLS] gi|108769424|gb|ABG08146.1| deoxyribodipyrimidine photo-lyase type I [Mycobacterium sp. MCS] gi|119694209|gb|ABL91282.1| deoxyribodipyrimidine photo-lyase type I [Mycobacterium sp. KMS] gi|126234408|gb|ABN97808.1| deoxyribodipyrimidine photo-lyase type I [Mycobacterium sp. JLS] Length = 445 Score = 355 bits (910), Expect = 1e-95, Method: Composition-based stats. Identities = 145/472 (30%), Positives = 227/472 (48%), Gaps = 32/472 (6%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 L+W R DLR+ D AL A D +V+A ++ P R+ +++ +L + Sbjct: 2 PTLLWFRRDLRLHDLPALVDAAQ-GDGQVLACYVLDPRL--HRSAGPRRLQYLHDALRDL 58 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128 + L + +V + + + + + ++ + + RRD + K L Sbjct: 59 RDQLDGRLLVTRGRPE-------QRIPALAKSIDASAVYVSGDFTPFGRRRDDAVRKALG 111 Query: 129 HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188 V + L+ PG + YKV++PF A ++ +A +S P A + P Sbjct: 112 E-VPLQPSGSPYLVSPGRVTKGDGTPYKVFSPFFDAWRRHGWRAPAQSGPDSATWI-DPA 169 Query: 189 TPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPY 248 + + P P GE+ A R F +++ Y + R+ P + TS++S + Sbjct: 170 DLTGRDLRTEIPDDGATLDIPAGERAAAQHWRAFVADELDGYADNRNRPDLDVTSRMSAH 229 Query: 249 LSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFI 308 L G + PR + L GA ++L EL +R+FY ++ +P + Sbjct: 230 LKFGTIHPRTMVDDL---------GRGKGAQAYLRELAFRDFYAAVLHEWPRSVWWN-WN 279 Query: 309 PWTEKIEWNK---DSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365 + I ++ AWK+G TGFPI+DA MRQL IGWMHNR+RMI ASFLVKDL Sbjct: 280 TGFDGIRVDEGAVAEQRFDAWKRGRTGFPIVDAGMRQLAGIGWMHNRVRMIVASFLVKDL 339 Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425 + W+ G +F+ QL+DGD+A+N GWQW A G D+ P+FR+FNP+ QG +FDP GT++ Sbjct: 340 HLPWQWGARWFLEQLVDGDMANNQHGWQWTAGCGTDAAPFFRVFNPSTQGAKFDPDGTYV 399 Query: 426 RHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477 R W+PEL V + +D +YP PIVDH L +Y Sbjct: 400 RRWVPELKGVADVH-------KMGDDRPADYPAPIVDHAAERAEALRRYAEI 444 >gi|159029066|emb|CAO90052.1| unnamed protein product [Microcystis aeruginosa PCC 7806] Length = 485 Score = 355 bits (910), Expect = 1e-95, Method: Composition-based stats. Identities = 135/487 (27%), Positives = 232/487 (47%), Gaps = 31/487 (6%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQ-----HGISARQSHFIYASL 65 L+W RNDLR+ D++A+Y A ++I + Q+ ++ F+ S+ Sbjct: 4 LIWYRNDLRVHDHEAIYRAIQE-QLEIIPFYCFDERQFGFTSYGFPKTGKFRAKFLLESV 62 Query: 66 LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125 +Q+SL G + E + + ++ +++Y+++ E+ +K + K Sbjct: 63 ANLQQSLEGLGGNLIIRRGKPE----EIIPQLVQELQIARVYYHQEVTAEELAVEKAVNK 118 Query: 126 RLQHR-VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL 184 L V K+F + L P + Q+ +++T FRK + ++ + P +L Sbjct: 119 ALSGVPVQIKTFWTATLYHPDDLPFTVNQLPELFTNFRKQIERHWEIRTTYASPKKLTKL 178 Query: 185 TGPVTPSNIPRFFDYPFQAIDP------MFPIGEQNALHILRKFCKEKVY--YYVEQRD- 235 + N+P D + F GE ++++ + Y E R+ Sbjct: 179 PK-IDWGNLPSLNDLGLTELILDRGGVLSFQGGEMAGKSRVKEYIWDSDSLKTYKETRNE 237 Query: 236 IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLM 295 + +S+ S +LS+G LSPR + + +++ +K S + + EL+WR+F+R + Sbjct: 238 MLGTNYSSKFSAWLSLGCLSPRYIYEEV-QKYEQTRVKNDS-TYWLIFELLWRDFFRFIC 295 Query: 296 AFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRM 355 + + + K + + W +D W +G TG+P++DA MR+L G+M NR R Sbjct: 296 SKHGNKIFYKSGLQEL-NLPWLEDWQRFNLWCEGKTGYPLVDANMRELAATGFMSNRGRQ 354 Query: 356 ITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQG 415 ASFL K+L +DWR+G E+F S L+D D+ SN G W + A GND+ FR FN Q Sbjct: 355 NVASFLTKNLGIDWRMGAEWFESLLVDYDVCSNWGNWNYTAGVGNDARG-FRYFNIPKQS 413 Query: 416 KRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND------LSLNYPLPIVDHKKACHH 469 K +DP+G ++RHWLPEL + IH P+ + L +NYP PIVD ++ H Sbjct: 414 KDYDPKGDYLRHWLPELALIKGDKIHEPYKLSLEEQKRYGVILGVNYPRPIVDFFQSIKH 473 Query: 470 TLNQYYA 476 Y A Sbjct: 474 NEKIYLA 480 >gi|56553448|gb|AAV97867.1| cryptochrome 2 [Sorghum bicolor] Length = 690 Score = 355 bits (910), Expect = 1e-95, Method: Composition-based stats. Identities = 143/507 (28%), Positives = 236/507 (46%), Gaps = 30/507 (5%) Query: 1 MKATTA-------MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGI 53 M A+++ +VW R DLR+ DN A AA + +V+ ++ +PE+ + Sbjct: 1 MSASSSSLCGGDPAMRSVVWFRRDLRVEDNPA-LAAAARAGGEVVPAYVWSPEEEGPYYP 59 Query: 54 SARQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYE 113 +I SL ++ SL + G + S D++ L T +++N Y+ Sbjct: 60 GRVSRWWISQSLKRLDASLRRLGAGKLVTRRSA--DAVVALLQLVRDTGATHVYFNHLYD 117 Query: 114 INEVRRDKLLEKRLQ-HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQA 172 + RD L++ L ++ +SF+ +L P +++ Q + ++T F + Sbjct: 118 PISLVRDHRLKEMLAAEGIVVQSFNADLLYEPWEVVDDEGQPFTMFTAFWNRCLSMQYDP 177 Query: 173 DLRSLPVPAIRLTG-PVTPSNIPRFFDYPFQAIDPM----FPIGEQNALHILRKFCKEKV 227 LP I + PS F D + + + + G QNA L F + Sbjct: 178 PAPLLPPKKINSGDLSMCPSEDLIFEDDSERGSNALLARAWTPGWQNADKALTAFLNGPL 237 Query: 228 YYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFS----WLN 283 Y R TS LSP+L G LS R+ ++ ++ + + + A +L Sbjct: 238 ADYSVNRKKADSASTSLLSPHLHFGELSVRKVFHLVRMKQLVWSNEGNHAAEESCTLFLR 297 Query: 284 ELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQL 343 + RE+ R+L +PS +P + W + + W+QG TG+P++DA MR+L Sbjct: 298 SIGLREYSRYLSFNHPS-SHERPLLAHLRFFPWVVNESYFKIWRQGRTGYPLVDAGMREL 356 Query: 344 NTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSV 403 GW+H+R+R++ +SF VK L + WR G +YF LLD DL S+ GWQ+ + DS Sbjct: 357 WATGWLHDRIRVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYITGSLPDSR 416 Query: 404 PYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPH----SWLDKNDLSL--NYP 457 RI NP +G +FDP G ++R W+PEL +PT++IH P S L + L NYP Sbjct: 417 ELDRIDNPQFEGYKFDPHGEYVRRWIPELVRLPTEWIHHPWDAPVSVLQAAGIELGSNYP 476 Query: 458 LPIVDHKKACHH---TLNQYYAAKKQS 481 LPIV+ A L++ + + S Sbjct: 477 LPIVELDAAKARLQEALSEMWQLEAAS 503 >gi|166366036|ref|YP_001658309.1| deoxyribodipyrimidine photolyase [Microcystis aeruginosa NIES-843] gi|166088409|dbj|BAG03117.1| deoxyribodipyrimidine photolyase [Microcystis aeruginosa NIES-843] Length = 485 Score = 354 bits (909), Expect = 1e-95, Method: Composition-based stats. Identities = 133/485 (27%), Positives = 226/485 (46%), Gaps = 31/485 (6%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQ-----HGISARQSHFIYASL 65 L+W RNDLR+ D++A+Y A ++I + Q+ ++ F+ S+ Sbjct: 4 LIWYRNDLRVHDHEAIYQAVQE-QFEIIPFYCFDERQFGFTSYGFPKTGKFRAKFLLESV 62 Query: 66 LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125 +++SL G + D + + ++ K++Y+++ E+ +K + K Sbjct: 63 ADLRQSLESLGGNLIIRRGKPED----IIPQLVQELQIAKVYYHQEVTAEELAVEKAVNK 118 Query: 126 RLQHR-VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL 184 L V K+F + L P + Q+ +++T FRK + ++ P +L Sbjct: 119 ALSGVPVQIKTFWTATLYHPDDLPFTLNQLPELFTNFRKQVERHWQIRATYPTPKKLTKL 178 Query: 185 TGPVTPSNIPRFFDYPFQAIDP------MFPIGEQNALHILRKFCKEKVY--YYVEQRD- 235 + N+P D F GE ++++ + Y E R+ Sbjct: 179 PK-IELGNLPSLNDLGLTESILDRGGVLSFQGGEMAGKSRVKEYIWDSDSLKTYKETRNE 237 Query: 236 IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLM 295 + +S+ S +LS G LSPR + + +++ +K S + + EL+WR+F+R + Sbjct: 238 MLGTNYSSKFSAWLSFGCLSPRYIYEEV-QKYEQTRVKNDS-TYWLIFELLWRDFFRFMC 295 Query: 296 AFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRM 355 + + K + + W +D W +G TG+P++DA MR+L G+M NR R Sbjct: 296 RKHGNKIFYKSGLQEL-YLPWLEDWERFNLWCEGKTGYPLVDANMRELAATGFMSNRGRQ 354 Query: 356 ITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQG 415 ASFL K+L +DW +G E+F S L+D D+ SN G W + A GND+ FR FN Q Sbjct: 355 NVASFLSKNLGIDWCMGAEWFESLLIDYDVCSNWGNWNYTAGVGNDARG-FRYFNIPKQS 413 Query: 416 KRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND------LSLNYPLPIVDHKKACHH 469 K +DP+G ++RHWLPEL + IH P+ + L +NYP PIVD ++ H Sbjct: 414 KDYDPKGDYLRHWLPELALIKGDKIHEPYKLSPEEQKRYGVILGVNYPRPIVDFFQSIKH 473 Query: 470 TLNQY 474 Y Sbjct: 474 NEKIY 478 >gi|28201254|dbj|BAB70688.2| cryptochrome 1b [Oryza sativa Japonica Group] Length = 700 Score = 354 bits (909), Expect = 1e-95, Method: Composition-based stats. Identities = 142/491 (28%), Positives = 229/491 (46%), Gaps = 23/491 (4%) Query: 10 HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69 +VW R DLR+ DN A AA + +V+ ++ PE+ + ++ SL + Sbjct: 20 TVVWFRRDLRVEDNPA-LAAAARAGGEVVPAYVWAPEEDGPYYPGRVSRWWLSQSLKHLD 78 Query: 70 KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR-LQ 128 SL + G + S D++ L T+LF+N Y+ + RD L++ Sbjct: 79 ASLRRLGAGKLVTRRSA--DAVVALLQLVRDTGATRLFFNHLYDPISLVRDHRLKEMMAA 136 Query: 129 HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG-P 187 +I +SF+ +L P +++ Q + ++ PF + LP I Sbjct: 137 EGIIVQSFNADLLYEPWEVVDDEGQSFTMFAPFWNRCLSMPYDPAAPLLPPKRINSGDLS 196 Query: 188 VTPSNIPRFFDYPFQAIDPM----FPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS 243 + PS+ F D + + + + G QNA L F + +Y R TS Sbjct: 197 MCPSDDLIFEDDSERGSNALLARAWSPGWQNADKALTAFLNGPLIHYSVNRKKADSASTS 256 Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFS----WLNELIWREFYRHLMAFYP 299 LSPYL G LS R+ ++ ++ + + + A +L + RE+ R+L +P Sbjct: 257 LLSPYLHFGELSVRKVFHLVRMKQLVWSNEGNRAAEESCTLFLRSIGLREYSRYLSFNHP 316 Query: 300 SVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITAS 359 KP + W + + W+QG TG+P++DA MR+L GW+H+R+R++ +S Sbjct: 317 -CSHEKPLLAHLRFFPWVINECYFKIWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSS 375 Query: 360 FLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFD 419 F VK L + WR G +YF LLD DL S+ GWQ+ + + D RI NP ++G +FD Sbjct: 376 FFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGSLPDGRELDRIDNPQLEGYKFD 435 Query: 420 PQGTFIRHWLPELNNVPTQYIHAPHSWLDK------NDLSLNYPLPIV--DHKKAC-HHT 470 P G ++R WLPEL +PT++IH P +L NYPLPIV D A Sbjct: 436 PHGEYVRRWLPELARLPTEWIHHPWDAPASVLQAAGVELGSNYPLPIVGLDAANARLQEA 495 Query: 471 LNQYYAAKKQS 481 L++ + + S Sbjct: 496 LSEMWQLEAAS 506 >gi|315444996|ref|YP_004077875.1| deoxyribodipyrimidine photo-lyase type I [Mycobacterium sp. Spyr1] gi|315263299|gb|ADU00041.1| deoxyribodipyrimidine photo-lyase type I [Mycobacterium sp. Spyr1] Length = 446 Score = 354 bits (909), Expect = 1e-95, Method: Composition-based stats. Identities = 149/471 (31%), Positives = 230/471 (48%), Gaps = 31/471 (6%) Query: 12 VWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQKS 71 +W R DLR+ D AL AA D V+A ++ P +R+ ++Y +L +++S Sbjct: 2 LWFRRDLRLADLPALVAAAE-VDGDVLACYVLDPRLKAT--GGSRRLQYLYDALRDLRES 58 Query: 72 LSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHRV 131 L + ++ D + + + + + + +RRD+ + L V Sbjct: 59 LDGRLLI-------TRGDPVSRIPVLAAAVGASSVHVSEDFTPFGMRRDEQVRDALGD-V 110 Query: 132 ICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPS 191 + L+ PG + YKV+TPF A Q+ + S P A P + Sbjct: 111 ELVATGSPYLVSPGRVTKGDGSPYKVFTPFFDAWRQHGWRPPAESGPRSA-HWLDPADVA 169 Query: 192 NIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSI 251 P D P ++ P GE A ++F + + Y E R+ P + TS++S +L Sbjct: 170 GKPGITDIPDAGVELDLPAGETAARRQWKQFVDDGLAGYAEDRNRPDLAATSRMSAHLKF 229 Query: 252 GVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWT 311 G + PR + GA ++L EL +R+FY ++A +P + Sbjct: 230 GTIHPRTL---------AADLGRGKGAQAYLRELAFRDFYAAVVAEWPRSTWWN-WNSTF 279 Query: 312 EKIEWNKDSHL---LQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVD 368 + IE + +AWK G TGFPI+DA MRQL G++HNR+RMI ASFLVKDL + Sbjct: 280 DAIEVDDGPDAQRAFEAWKAGRTGFPIVDAGMRQLAETGFVHNRVRMIVASFLVKDLHLP 339 Query: 369 WRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHW 428 W+ G +F+ QL DGD+A+N GWQWAA G D+ PYFR+FNPT QGK+FDP G +++ W Sbjct: 340 WQWGARWFLDQLTDGDMANNQHGWQWAAGCGTDAAPYFRVFNPTTQGKKFDPAGVYVKRW 399 Query: 429 LPELNNVPTQ-YIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478 + EL +V + +H D +YP PIVDH + L +Y + + Sbjct: 400 VEELRDVASSVDVHN-----LDRDRPADYPEPIVDHAQERAEALRRYNSLR 445 >gi|254450032|ref|ZP_05063469.1| deoxyribodipyrimidine photolyase [Octadecabacter antarcticus 238] gi|198264438|gb|EDY88708.1| deoxyribodipyrimidine photolyase [Octadecabacter antarcticus 238] Length = 469 Score = 354 bits (909), Expect = 2e-95, Method: Composition-based stats. Identities = 155/480 (32%), Positives = 224/480 (46%), Gaps = 26/480 (5%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M + W+R D RI DN AL AAC S VIA+FI E HG + + + + Sbjct: 1 MKPVIYWVRRDFRIGDNAALSAACA-SGRPVIALFICD-EVVEGHGAAPKFR--LGEGVR 56 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 +L++ G + D++ L +Q V +++NR Y+ RD ++ Sbjct: 57 VFGAALAEAGSRLILRRG----DALAVLRELVVQTGVQAIYWNRLYDPASKARDTGVKAA 112 Query: 127 LQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQAD---LRSLPVPAI 182 L+ I SF +L P ++ Y+V+TP K + V S+PVP + Sbjct: 113 LKDDGIEVASFAGHLLFEPWTVETKTGGFYRVFTPLWKTVRGREVATPIAAPASVPVPDV 172 Query: 183 R-LTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQG 241 + + + + +GE+ A L F E+V Y RD+P++ G Sbjct: 173 WPASDQLDDWKLGGAMRRGRDVLAAHICVGEEAARSRLDTFIDERVQSYQTNRDMPSVDG 232 Query: 242 TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSV 301 TS+LS L+ G +SP CW+ + K A + EL+WREF HL+ P + Sbjct: 233 TSRLSENLTYGEISPAVCWHAGWA----AIHSGKGQAEVFCKELVWREFAYHLVHHTPHI 288 Query: 302 CMGKPFIPWTEKIEWNKDS-HLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASF 360 + + + + WN D + AWKQG TG P +DAAMR++ G MHNR RMI AS+ Sbjct: 289 -VDRNWKEGWDAFPWNTDDTAEVMAWKQGRTGVPFVDAAMREMYVSGTMHNRGRMIVASY 347 Query: 361 LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDP 420 L K L+ W++G+ +F L D D ASN GWQWAA +G D+ PYFR+FNP Q +FD Sbjct: 348 LTKHLMTHWKVGQAWFDDCLTDWDPASNAMGWQWAAGSGPDAAPYFRVFNPVTQLDKFDH 407 Query: 421 QGTFIRHWLPELNNVPTQ----YIHA-PHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYY 475 G + R W+ E Y A P SW S YP P+VD L Y Sbjct: 408 AGLYARTWIAEGQGEAPDTALSYFDAIPKSWGLAP--SDVYPAPVVDMATGRQRALEAYK 465 >gi|332185330|ref|ZP_08387079.1| DNA photolyase family protein [Sphingomonas sp. S17] gi|332015054|gb|EGI57110.1| DNA photolyase family protein [Sphingomonas sp. S17] Length = 455 Score = 354 bits (909), Expect = 2e-95, Method: Composition-based stats. Identities = 144/482 (29%), Positives = 222/482 (46%), Gaps = 41/482 (8%) Query: 8 SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67 S H+VW R DLR+ D AL AA V+ V+I E + Q +++ SL Sbjct: 3 SPHIVWFRQDLRLHDQPALLAAAEAG--PVLPVYILDDETPGDWKMGGAQRWWLHHSLEA 60 Query: 68 VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127 + K L G + ++E L + + + R YE + + L RL Sbjct: 61 LAKDLKALGSRLILRRG----RAVEVLQALSKEAGAEAIHAIRHYEPWWRKAEDELGDRL 116 Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187 +D + L P + + + +++Y+ F K L ++ P LT P Sbjct: 117 ------CLYDGNHLARPELVTTGSGKPFRIYSAFWKGLQGHMPPEHPLEAPD---ALTAP 167 Query: 188 VTPSNIPRFFDYPF--------QAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAI 239 + D+ D + GE A + F K Y R++P+ Sbjct: 168 DRWPASDKLADWDLLPTKPDWSTGFDADWTPGEATARERMADFVA-KAAAYDTARNMPSE 226 Query: 240 QGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYP 299 +G+S+LSP+L G +SPR W+ L K+ ++ EL WR+F ++ P Sbjct: 227 EGSSRLSPHLHFGEVSPRAVWHAL---------DRKAETETFRKELAWRDFTDGVVMAIP 277 Query: 300 SVCMGKPFIPWTEKIEWNKDSHL---LQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMI 356 + +K+ W K + L+AW+ G+TG+PI+DA MRQL T GWMHNR+RMI Sbjct: 278 DYA-DRNGREAFDKMPWRKGAEAEADLKAWRTGHTGYPIVDAGMRQLWTTGWMHNRVRMI 336 Query: 357 TASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGK 416 TASFL+K LL+DWR GE +F L+D D +N+ WQW A TG D+ + RI P Q + Sbjct: 337 TASFLIKHLLIDWREGERWFWDCLVDADYGNNSVNWQWVAGTGIDANMFGRIMAPLSQSE 396 Query: 417 RFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYA 476 +FD G +IR W+PEL ++ IH P + +YP I+ H++ L + Sbjct: 397 KFDA-GDYIREWVPELKDLSDAAIHDPD---EAGCRPKDYPAKIIGHREGRERALAAGKS 452 Query: 477 AK 478 + Sbjct: 453 VR 454 >gi|72383487|ref|YP_292842.1| deoxyribodipyrimidine photo-lyase type I [Prochlorococcus marinus str. NATL2A] gi|72003337|gb|AAZ59139.1| deoxyribodipyrimidine photo-lyase type I [Prochlorococcus marinus str. NATL2A] Length = 493 Score = 354 bits (909), Expect = 2e-95, Method: Composition-based stats. Identities = 162/498 (32%), Positives = 241/498 (48%), Gaps = 39/498 (7%) Query: 10 HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWR-QHGISARQSHFIYASLLQV 68 + W R DLR DN L+ A NS + +I V++ P+ S ++ F+ SL+++ Sbjct: 6 SIFWHRRDLRFGDNIGLFEASKNSKS-LIGVYVLDPKLLDLNRTTSEAKNWFLGESLIEL 64 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL- 127 QK+ +G D IE + +++N E E+ RDK + ++L Sbjct: 65 QKNWEIRGSRLLILNG----DPIELISKLAELVHAECIYWNENIEPYEINRDKQIAEKLS 120 Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQN------------------- 168 + + +F D +++ P +I + + YKVY PF + I Sbjct: 121 KEKRKVYTFLDQLIVNPSNIKTNNDEPYKVYGPFYRKWIDLINITKSSENNLIQTSETAK 180 Query: 169 ----LVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFP--IGEQNALHILRKF 222 L + +L S+ + +I + P GE ++ L F Sbjct: 181 QLTGLNERELSSIKNSDLNYCITNKSKSIYELLSLNRFNKTNLCPCKPGESESIKQLNSF 240 Query: 223 CKEK-VYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPK-SGAFS 280 + Y + RDIP+++ TS LS LS+G +S R WN + + K + + Sbjct: 241 IHSGVINSYNKARDIPSLENTSHLSAALSLGTISCRVVWNGAQVSKNATDDEYKINSIDT 300 Query: 281 WLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAM 340 W+ EL WREFY++ + +P + G P+ W +AW G TG PIIDAAM Sbjct: 301 WIKELAWREFYQNALINFPELEKG-PYREKWLDFPWQNRPDWFEAWGDGLTGIPIIDAAM 359 Query: 341 RQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGN 400 RQL GWMHNR RMI ASFLVKDLL+DWR+GE +FM L+DGDLA+NNGGWQW+AS+G Sbjct: 360 RQLKCSGWMHNRCRMIVASFLVKDLLIDWRLGELFFMKSLVDGDLAANNGGWQWSASSGM 419 Query: 401 DSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPI 460 D P RIFNP Q +FD G +IR W+PEL+++ T + + + + +YP PI Sbjct: 420 DPKPM-RIFNPFRQASKFDEDGEYIRKWIPELSHISTPNLLSGEISSAERN---SYPKPI 475 Query: 461 VDHKKACHHTLNQYYAAK 478 + HK Y K Sbjct: 476 ISHKNQTSIFKELYSNIK 493 >gi|189502200|ref|YP_001957917.1| hypothetical protein Aasi_0813 [Candidatus Amoebophilus asiaticus 5a2] gi|189497641|gb|ACE06188.1| hypothetical protein Aasi_0813 [Candidatus Amoebophilus asiaticus 5a2] Length = 486 Score = 354 bits (909), Expect = 2e-95, Method: Composition-based stats. Identities = 151/490 (30%), Positives = 237/490 (48%), Gaps = 29/490 (5%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 ++ +LR D L ++ +I +FI P+ + + ++Y S+ ++ Sbjct: 7 ILVFYQNLRFHDQPLLLEVLQHTQ-PIIPIFINDPKVIER--LGEASQWWLYQSIRAFKQ 63 Query: 71 SLSQK-GIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL-Q 128 I DS+ L + K++ ++Y E D+ + + L + Sbjct: 64 QWKSAYNIELILRTG----DSVRVLQQLLQETNANKIYLGKRYTKLEREIDERIYEELNR 119 Query: 129 HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188 + K F+ +L P +I N ++++TPF K + ++AD LP P G Sbjct: 120 DGITIKFFNTHLLFEPANIKNQQGNSFQIFTPFWKTCLTKTIEAD---LPAPDHIFNGYN 176 Query: 189 TPSNIPRFFDYPFQAIDPMFP--------IGEQNALHILRKFCKEKVYYYVEQRDIPAIQ 240 P N D+ + + + E AL+ L F K + Y RD+ A Sbjct: 177 QPINSDDLSDWKWGHSQAAWTRKLANHWHLSELAALNKLAIFLKNSLAGYNNNRDLIASP 236 Query: 241 G-TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYP 299 +SQLSPYL G +S ++ +N + + G ++L E+ WREF +L+ +P Sbjct: 237 SFSSQLSPYLRWGQISAKKIFNEVIHTMERDPTIQQDGN-TFLKEIGWREFSYYLLYHHP 295 Query: 300 SVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITAS 359 S P + + + LL+ W++G TGFPIIDA MRQL GWM NRLRMI AS Sbjct: 296 S-MQEVPLNKRFQDFPYENNLSLLEKWQKGTTGFPIIDAGMRQLWLEGWMPNRLRMIVAS 354 Query: 360 FLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFD 419 FL+KDLL++W+ G+ +F+ L+D D A+N WQW A G D+ PYFRIFNP QGK+FD Sbjct: 355 FLIKDLLINWQFGQAWFIDTLVDADPANNANSWQWVAGCGTDASPYFRIFNPITQGKKFD 414 Query: 420 PQGTFIRHWLPELNNVPTQYIHAPHSWLDKND------LSLNYPLPIVDHKKACHHTLNQ 473 +G +IR ++PEL ++PT+YIH P + +YP PIVDH + L+ Sbjct: 415 SEGKYIRKYVPELKDLPTKYIHQPWEMPITLQEEYNVIIGKDYPHPIVDHTIQKNKALDC 474 Query: 474 YYAAKKQSLL 483 + K + L Sbjct: 475 WKEFKGKGYL 484 >gi|115458700|ref|NP_001052950.1| Os04g0452100 [Oryza sativa Japonica Group] gi|113564521|dbj|BAF14864.1| Os04g0452100 [Oryza sativa Japonica Group] gi|218194950|gb|EEC77377.1| hypothetical protein OsI_16111 [Oryza sativa Indica Group] Length = 700 Score = 354 bits (909), Expect = 2e-95, Method: Composition-based stats. Identities = 142/491 (28%), Positives = 229/491 (46%), Gaps = 23/491 (4%) Query: 10 HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69 +VW R DLR+ DN A AA + +V+ ++ PE+ + ++ SL + Sbjct: 20 TVVWFRRDLRVEDNPA-LAAAARAGGEVVPAYVWAPEEDGPYYPGRVSRWWLSQSLKHLD 78 Query: 70 KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR-LQ 128 SL + G + S D++ L T+LF+N Y+ + RD L++ Sbjct: 79 ASLRRLGAGKLVTRRSA--DAVVALLQLVRDTGATRLFFNHLYDPISLVRDHRLKEMMAA 136 Query: 129 HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG-P 187 +I +SF+ +L P +++ Q + ++ PF + LP I Sbjct: 137 EGIIVQSFNADLLYEPWEVVDDEGQSFTMFAPFWNRCLSMPYDPAAPLLPPKRINSGDLS 196 Query: 188 VTPSNIPRFFDYPFQAIDPM----FPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS 243 + PS+ F D + + + + G QNA L F + +Y R TS Sbjct: 197 MCPSDDLIFEDDSERGSNALLARAWSPGWQNADKALTAFLNGPLIHYSVNRKKADSASTS 256 Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFS----WLNELIWREFYRHLMAFYP 299 LSPYL G LS R+ ++ ++ + + + A +L + RE+ R+L +P Sbjct: 257 LLSPYLHFGELSVRKVFHLVRMKQLVWSNEGNRAAEESCTLFLRSIGLREYSRYLSFNHP 316 Query: 300 SVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITAS 359 KP + W + + W+QG TG+P++DA MR+L GW+H+R+R++ +S Sbjct: 317 -CSHEKPLLAHLRFFPWVINECYFKIWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSS 375 Query: 360 FLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFD 419 F VK L + WR G +YF LLD DL S+ GWQ+ + + D RI NP ++G +FD Sbjct: 376 FFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGSLPDGRELDRIDNPQLEGYKFD 435 Query: 420 PQGTFIRHWLPELNNVPTQYIHAPHSWLDK------NDLSLNYPLPIV--DHKKAC-HHT 470 P G ++R WLPEL +PT++IH P +L NYPLPIV D A Sbjct: 436 PHGEYVRRWLPELARLPTEWIHHPWDAPASVLQAAGVELGSNYPLPIVGLDAANARLQEA 495 Query: 471 LNQYYAAKKQS 481 L++ + + S Sbjct: 496 LSEMWQLEAAS 506 >gi|21740729|emb|CAD40850.1| OSJNBa0086B14.23 [Oryza sativa Japonica Group] gi|116310174|emb|CAH67187.1| H0815C01.8 [Oryza sativa Indica Group] Length = 693 Score = 354 bits (909), Expect = 2e-95, Method: Composition-based stats. Identities = 142/491 (28%), Positives = 229/491 (46%), Gaps = 23/491 (4%) Query: 10 HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69 +VW R DLR+ DN A AA + +V+ ++ PE+ + ++ SL + Sbjct: 13 TVVWFRRDLRVEDNPA-LAAAARAGGEVVPAYVWAPEEDGPYYPGRVSRWWLSQSLKHLD 71 Query: 70 KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR-LQ 128 SL + G + S D++ L T+LF+N Y+ + RD L++ Sbjct: 72 ASLRRLGAGKLVTRRSA--DAVVALLQLVRDTGATRLFFNHLYDPISLVRDHRLKEMMAA 129 Query: 129 HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG-P 187 +I +SF+ +L P +++ Q + ++ PF + LP I Sbjct: 130 EGIIVQSFNADLLYEPWEVVDDEGQSFTMFAPFWNRCLSMPYDPAAPLLPPKRINSGDLS 189 Query: 188 VTPSNIPRFFDYPFQAIDPM----FPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS 243 + PS+ F D + + + + G QNA L F + +Y R TS Sbjct: 190 MCPSDDLIFEDDSERGSNALLARAWSPGWQNADKALTAFLNGPLIHYSVNRKKADSASTS 249 Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFS----WLNELIWREFYRHLMAFYP 299 LSPYL G LS R+ ++ ++ + + + A +L + RE+ R+L +P Sbjct: 250 LLSPYLHFGELSVRKVFHLVRMKQLVWSNEGNRAAEESCTLFLRSIGLREYSRYLSFNHP 309 Query: 300 SVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITAS 359 KP + W + + W+QG TG+P++DA MR+L GW+H+R+R++ +S Sbjct: 310 -CSHEKPLLAHLRFFPWVINECYFKIWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSS 368 Query: 360 FLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFD 419 F VK L + WR G +YF LLD DL S+ GWQ+ + + D RI NP ++G +FD Sbjct: 369 FFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGSLPDGRELDRIDNPQLEGYKFD 428 Query: 420 PQGTFIRHWLPELNNVPTQYIHAPHSWLDK------NDLSLNYPLPIV--DHKKAC-HHT 470 P G ++R WLPEL +PT++IH P +L NYPLPIV D A Sbjct: 429 PHGEYVRRWLPELARLPTEWIHHPWDAPASVLQAAGVELGSNYPLPIVGLDAANARLQEA 488 Query: 471 LNQYYAAKKQS 481 L++ + + S Sbjct: 489 LSEMWQLEAAS 499 >gi|27380421|ref|NP_771950.1| DNA photolyase [Bradyrhizobium japonicum USDA 110] gi|27353585|dbj|BAC50575.1| DNA photolyase [Bradyrhizobium japonicum USDA 110] Length = 442 Score = 354 bits (909), Expect = 2e-95, Method: Composition-based stats. Identities = 146/450 (32%), Positives = 214/450 (47%), Gaps = 23/450 (5%) Query: 43 ATPEQWRQHGISARQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQR 102 R G +AR ++ SL + ++ +G + + + Sbjct: 2 LDETAGRAPGGAAR--WWLAQSLRALGAEIAARGGSLILRKGPAAG----VIPEEARESG 55 Query: 103 VTKLFYNRQYEINEVRRDKLLEKRLQH-RVICKSFDDSVLLPPGSILNHALQMYKVYTPF 161 +++N + ++ LE L V +SF +L+PP +I N + +V+TPF Sbjct: 56 ARAVYWNGIAQAPHQAIERRLEAALAKLGVDSQSFPGDLLVPPSAIRNKEGRGLRVFTPF 115 Query: 162 RKALIQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYP------FQAIDPMFPIGEQNA 215 + ++ + + LP P GP S+ + + + GE +A Sbjct: 116 WRRVLS--LGDPPKPLPAPKQLRPGPKIVSDRLESWQLAPTKPDWAGGLRERWTPGEASA 173 Query: 216 LHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPK 275 LR F K Y RD P GTS LSP+L G LSPRQ W+ + + Sbjct: 174 RARLRDFLKTIARGYAGDRDRPDRVGTSGLSPHLRFGELSPRQVWHAARFAAAEDAALG- 232 Query: 276 SGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPI 335 G +L+EL WREF RHL+ +P + + W D +L AW++G TG+PI Sbjct: 233 PGIEKFLSELGWREFCRHLLHDHPDLATEN-LQTNFDGFPWQSDGKVLAAWQRGRTGYPI 291 Query: 336 IDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWA 395 +DA +R+L G MHNR+RM+ ASFLVK LL+DWR GE +F L+D D SN WQW Sbjct: 292 VDAGLRELWHTGVMHNRVRMVVASFLVKHLLIDWRDGEAWFWDTLVDADAGSNPANWQWV 351 Query: 396 ASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKN----- 450 A G D+ PYFR+FNP +QG++FDP GT++R W+PEL +P + IH P Sbjct: 352 AGCGADAAPYFRVFNPQLQGEKFDPDGTYVRRWVPELQGLPAKLIHQPWQATPNELASAG 411 Query: 451 -DLSLNYPLPIVDHKKACHHTLNQYYAAKK 479 L YP PIVDH + L+ Y +K Sbjct: 412 VTLGKTYPQPIVDHARGRERALSAYAKIRK 441 >gi|254511542|ref|ZP_05123609.1| deoxyribodipyrimidine photolyase [Rhodobacteraceae bacterium KLH11] gi|221535253|gb|EEE38241.1| deoxyribodipyrimidine photolyase [Rhodobacteraceae bacterium KLH11] Length = 479 Score = 354 bits (908), Expect = 2e-95, Method: Composition-based stats. Identities = 154/495 (31%), Positives = 226/495 (45%), Gaps = 36/495 (7%) Query: 1 MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHF 60 M A S ++W R DLR++D+ AL AA ++ VFI + A Sbjct: 1 MDMAPAHSAIILWFRRDLRLSDHPALSAAMRTG-RPIVPVFILDDAV---QALGAAPKWR 56 Query: 61 IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120 + L K LSQ G Q + +++ L+S +F++R YE + RD Sbjct: 57 LGLGLEAFAKGLSQIGSRLILRQGA----ALDVLESLIRDTGAGTVFWSRGYEPVSIARD 112 Query: 121 KLLEKRL-QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPV 179 ++ L + +SF +L P +I + Q ++++TP +A+ D+ + Sbjct: 113 TRIKSALTGQGIEVRSFAGHLLFEPWTIATKSGQPFRMFTPMWRAVQGR----DVPTPEP 168 Query: 180 PAIRLTGPVTPSNIPRFFDY--------PFQAIDPMFPIGEQNALHILRKFCKEKVYYYV 231 RL P + D+ + P GE A L F ++ Y Sbjct: 169 GPARLMAPEGWPGSDQLADWQLGRDMRRGARIARPFIRPGEVAARDQLDGFL-HRIDQYA 227 Query: 232 EQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFY 291 EQRD GTS LS YLS+G + PR W+R++ GA ++L +L+WREF Sbjct: 228 EQRDRVDKTGTSDLSEYLSLGEIGPRMIWHRVQNAAR----TGAPGADAYLRQLVWREFA 283 Query: 292 RHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQA--WKQGYTGFPIIDAAMRQLNTIGWM 349 HLM +P + + P + W D + W+Q TG P++DA +RQ+ G M Sbjct: 284 YHLMYHWPHLLTDN-WKPEWDTFPWGTDPDTPEIRAWRQARTGIPLVDAGLRQMYVTGRM 342 Query: 350 HNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIF 409 HNR RMI AS+L K L+ W++G ++F L D D A+N GWQW A +G D+ PYFRIF Sbjct: 343 HNRARMIVASYLTKHLMTHWKLGADWFADCLTDWDPAANAMGWQWVAGSGPDAAPYFRIF 402 Query: 410 NPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHA-----PHSWLDKNDLSLNYPLPIVDHK 464 NP Q RFDP +IR W+ E P A P SW D YP P+V K Sbjct: 403 NPQTQRVRFDPDEGYIRRWIAEGQARPEATALAYFDAIPRSWGLSPDDP--YPEPVVGLK 460 Query: 465 KACHHTLNQYYAAKK 479 + L + + KK Sbjct: 461 QGRTRALRAFESRKK 475 >gi|291443506|ref|ZP_06582896.1| deoxyribodipyrimidine photo-lyase [Streptomyces roseosporus NRRL 15998] gi|291346453|gb|EFE73357.1| deoxyribodipyrimidine photo-lyase [Streptomyces roseosporus NRRL 15998] Length = 456 Score = 354 bits (908), Expect = 2e-95, Method: Composition-based stats. Identities = 137/469 (29%), Positives = 219/469 (46%), Gaps = 22/469 (4%) Query: 8 SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67 SV +V +DLR+ D+ L AA ++D +V+ +F+ R + + F+ L Sbjct: 3 SVAVVLFTSDLRLHDHPVLRAALRDAD-EVVPLFVRDDAVHRAGFDAPNRLAFLADCLAD 61 Query: 68 VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127 + L +G + + Q + +R++ + + L Sbjct: 62 LDTGLRDRGGRLIVRRGGT----AREVKRVVEQTGADSVHIAAGVSGYAAQREERIREAL 117 Query: 128 QHRVICKSFDDSVL--LPPGSI-LNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL 184 D+V+ L PG + + V+TP+ + V+ L + +R+ Sbjct: 118 AGTGCELRVHDAVVTALAPGRVVPTGGKDHFAVFTPYFRRWEAEGVRGTLAAP--RTVRV 175 Query: 185 TGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244 V+ +P D + GE+ ++ + + Y + D A TS+ Sbjct: 176 PDGVSGDALPD-RDAVKGVSPGLARGGEEAGRKLVTSWLHGPMAAYEDGHDDLAGDATSR 234 Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304 LSP+L G +S + NR +E K G +++ +L WR+F+ ++A P Sbjct: 235 LSPHLHFGTVSAAELANRARE-------KGGPGGEAFVRQLAWRDFHHQVLAARPDASWS 287 Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364 + P ++ W D ++AWK G TG+P++DAAMRQL GWMHNR RM+TASFL K Sbjct: 288 -DYRPRHDR--WRSDEDEIEAWKSGRTGYPLVDAAMRQLAHEGWMHNRGRMLTASFLTKT 344 Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424 L VDWR+G +F+ L+DGD+A+N WQW A TG D+ P R+ NP IQGKRFDP G + Sbjct: 345 LYVDWRVGARHFLDLLVDGDVANNQLNWQWVAGTGTDTRP-NRVLNPVIQGKRFDPDGAY 403 Query: 425 IRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQ 473 +R W+PEL V +H P + ++YP P+VD +A Sbjct: 404 VRRWVPELAEVEGPAVHEPWKLEGLDRAGVDYPDPVVDLAEARSRFERA 452 >gi|307826660|gb|ADN94465.1| cryptochrome 2 [Helicoverpa armigera] Length = 648 Score = 354 bits (908), Expect = 2e-95, Method: Composition-based stats. Identities = 130/493 (26%), Positives = 197/493 (39%), Gaps = 32/493 (6%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 + W R LR+ DN AL ++ A VFI P + + F+ L + Sbjct: 39 VHWFRKGLRLHDNPALREGLLDA-ATFRCVFIIDPWFASSSNVGINKWRFLLQCLEDLDS 97 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH- 129 SL + + + L + T L + E RD + + + Sbjct: 98 SLRKLNSRLFVVRG----QPADALPKLFREWGTTALTFEEDPEPYGRVRDHNIMSKCREV 153 Query: 130 RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189 + S L I+ + +ALI ++ P+ A L G T Sbjct: 154 GITVTSRVSHTLYKLDQIIERNGGKAPLTYHQFQALIASMPPPPPAEAPISAQMLNGATT 213 Query: 190 PSN--------IPRFFDYPFQAID---PMFPIGEQNALHILRKFCKEKVYYYVEQRDIPA 238 P N +P + F+ P++ GE AL L + + K + R Sbjct: 214 PLNDDHDDRFGVPTLEELGFETEGLKPPVWIGGESEALARLERHLERKAWVASFGRPKMT 273 Query: 239 IQGT----SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHL 294 Q + LSPYL G LS R + +L E + +K S +++WREF+ Sbjct: 274 PQSLLASQTGLSPYLRFGCLSTRLFYYQLTELYK--RVKRVRPPLSLHGQILWREFFYCA 331 Query: 295 MAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLR 354 P+ + P +I W K+ L W G TGFP IDA M QL GW+H+ R Sbjct: 332 ATRNPNFDRMEG-NPICVQIPWEKNQEALAKWASGQTGFPWIDAIMIQLREEGWIHHLAR 390 Query: 355 MITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTI 413 A FL + DL + W G + F LLD D + N G W W S + +F + P Sbjct: 391 HAVACFLTRGDLWISWEEGMKVFDELLLDADWSVNAGMWMW-LSCSSFFQQFFHCYCPVR 449 Query: 414 QGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLD------KNDLSLNYPLPIVDHKKAC 467 G++ DP G FIR ++P L N+PT+YIH P + + + +YP+P+VDH KA Sbjct: 450 FGRKTDPNGDFIRRYIPALKNMPTRYIHEPWVAPEAVQQSARCIIGRDYPMPMVDHSKAS 509 Query: 468 HHTLNQYYAAKKQ 480 + + Q Sbjct: 510 QVNIERIKQVYAQ 522 >gi|23506659|gb|AAN37909.1| cryptochrome 2 apoprotein [Sorghum bicolor] Length = 691 Score = 353 bits (907), Expect = 2e-95, Method: Composition-based stats. Identities = 144/508 (28%), Positives = 236/508 (46%), Gaps = 31/508 (6%) Query: 1 MKATTAMSV--------HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHG 52 M A ++ S+ +VW R DLR+ DN A AA + +V+ ++ +PE+ + Sbjct: 1 MSAVSSSSLCGGDPAMRSVVWFRRDLRVEDNPA-LAAAARAGGEVVPAYVWSPEEEGPYY 59 Query: 53 ISARQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQY 112 +I SL + SL + G + S D++ L T +++N Y Sbjct: 60 PGRVSRWWISQSLKHLDASLRRLGAGKLVTRRSA--DAVVALLQLVRDTGATHVYFNHLY 117 Query: 113 EINEVRRDKLLEKRLQ-HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQ 171 + + RD L++ L ++ +SF+ +L P +++ Q + ++T F + Sbjct: 118 DPISLVRDHRLKEMLAAEGIVVQSFNADLLYEPWEVVDDERQPFTMFTAFWNRCLSMQYD 177 Query: 172 ADLRSLPVPAIRLTG-PVTPSNIPRFFDYPFQAIDPM----FPIGEQNALHILRKFCKEK 226 LP I + PS F D + + + + G QNA L F Sbjct: 178 PPAPLLPPKKINSGDLSMCPSEDLIFEDDSERGSNALLARAWTPGWQNADKALTAFLNGP 237 Query: 227 VYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFS----WL 282 + Y R TS LSP+L G LS R+ ++ ++ + + + A +L Sbjct: 238 LADYSVNRKKADSASTSLLSPHLHFGELSVRKVFHLVRMKQLVWSNEGNHAAEESCTLFL 297 Query: 283 NELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQ 342 + RE+ R+L +PS +P + W + + W+QG TG+P++DA MR+ Sbjct: 298 RSIGLREYSRYLSFNHPS-SHERPLLAHLRFFPWVVNESYFKIWRQGRTGYPLVDAGMRE 356 Query: 343 LNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDS 402 L GW+H+R+R++ +SF VK L + WR G +YF LLD DL S+ GWQ+ + DS Sbjct: 357 LWATGWLHDRIRVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYITGSLPDS 416 Query: 403 VPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPH----SWLDKNDLSL--NY 456 RI NP +G +FDP G ++R W+PEL +PT++IH P S L + L NY Sbjct: 417 RELDRIDNPQFEGYKFDPHGEYVRRWIPELVRLPTEWIHHPWDAPVSVLQAAGIELGSNY 476 Query: 457 PLPIVDHKKACHH---TLNQYYAAKKQS 481 PLPIV+ A L++ + + S Sbjct: 477 PLPIVELDAAKARLQEALSEMWQLEAAS 504 >gi|149635020|ref|XP_001507425.1| PREDICTED: similar to Cryptochrome 2 (photolyase-like) [Ornithorhynchus anatinus] Length = 582 Score = 353 bits (907), Expect = 3e-95, Method: Composition-based stats. Identities = 122/485 (25%), Positives = 193/485 (39%), Gaps = 31/485 (6%) Query: 19 RITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQKSLSQKGIV 78 R+ DN AL AA + + V V+I P + + F+ SL + SL + Sbjct: 20 RLHDNPALQAALRGARS-VRCVYILDPWFAASSSVGINRWRFLLQSLEDLDTSLRKLNSR 78 Query: 79 FQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH-RVICKSFD 137 + D + VT+L + E RD + K + V + + Sbjct: 79 LFVVRGQPTD----VFPRLFKEWGVTRLTFEYDSEPFGKERDAAIVKMAKEAGVEVVTEN 134 Query: 138 DSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPSNIPRFF 197 L I+ Q + +A+I + V + ++ G Sbjct: 135 SHTLYDLDRIIELNGQKPPLTYKRFQAIISRMELPKKPVSCVTSQQMEGCKAEIQDNHDD 194 Query: 198 DYPFQAIDPM-----------FPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGT---- 242 Y +++ + + GE AL L K + K + +R Sbjct: 195 TYGVPSLEELGFPTDGLGPAVWQGGETEALARLDKHLERKAWVANYERPRMNANSLLASP 254 Query: 243 SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVC 302 + LSPYL G LS R + RL + + + + + S +L+WREF+ P Sbjct: 255 TGLSPYLRFGCLSCRLFYYRLWDLYKKVK-RNSTPPLSLYGQLLWREFFYTAATNNPRFD 313 Query: 303 MGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLV 362 + P +I W+++ L W +G TGFP IDA M QL GW+H+ R A FL Sbjct: 314 RMEG-NPICIQIPWDRNPEALAKWAEGKTGFPWIDAIMTQLRQEGWIHHLARHAVACFLT 372 Query: 363 K-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQ 421 + DL V W G F LLD D + N G W W S +F + P G+R DP Sbjct: 373 RGDLWVSWESGVRVFDELLLDADFSVNAGSWMW-LSCSAFFQQFFHCYCPVGFGRRTDPS 431 Query: 422 GTFIRHWLPELNNVPTQYIHAPHSWLD------KNDLSLNYPLPIVDHKKACHHTLNQYY 475 G FIR +LP+L P++YI+ P + + K + ++YP PIV+H + + + Sbjct: 432 GDFIRRYLPKLKAFPSRYIYEPWNAPESVQKAAKCVIGVDYPRPIVNHAETSRLNIERMK 491 Query: 476 AAKKQ 480 +Q Sbjct: 492 QIYQQ 496 >gi|260427905|ref|ZP_05781884.1| deoxyribodipyrimidine photo-lyase [Citreicella sp. SE45] gi|260422397|gb|EEX15648.1| deoxyribodipyrimidine photo-lyase [Citreicella sp. SE45] Length = 475 Score = 353 bits (907), Expect = 3e-95, Method: Composition-based stats. Identities = 154/487 (31%), Positives = 224/487 (45%), Gaps = 28/487 (5%) Query: 1 MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHF 60 M+ + + + +VW+R DLR+TD+ AL+ A S VI VFI + A Sbjct: 1 MRMSESSPI-IVWIRRDLRLTDHAALHEA-GRSGRPVIPVFIRD---HGVDSLGAAPKWR 55 Query: 61 IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120 + L K L KG E L++ + +++ R Y+ + RD Sbjct: 56 LGQGLGHFAKLLGDKGSRLVLRAGPAR----EVLEALIDETAAGAVWWQRAYDPAAIERD 111 Query: 121 KLLEKRLQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSL-- 177 ++ L+ R +SF +L P ++ YKVY+PF +A+ + V L + Sbjct: 112 TAVKAALKDRGTDVRSFAGHLLFEPWTVETKQGGYYKVYSPFWRAVCERDVPEPLAAPSK 171 Query: 178 --PVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRD 235 P + + + ++ +GE+ A L F V Y + R+ Sbjct: 172 LTPPESWPEGEALDDWQLGAAMRRGGPVVEAHVRLGEETAQARLGAFMANGVDGYKDGRN 231 Query: 236 IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLM 295 + A G S LS LS+G +SP QCW+ K+GA +W EL+WREF HLM Sbjct: 232 LVAEDGCSGLSENLSLGEISPAQCWHAAMR----ARDAGKAGAETWAKELVWREFAYHLM 287 Query: 296 AFYPSVCMGKPFIPWTEKIEWNKDSHL--LQAWKQGYTGFPIIDAAMRQLNTIGWMHNRL 353 P + + + WNKD + AWK+ TG P +DAA+R++ G MHNR Sbjct: 288 WHTPHLLEDN-WREEWKAFPWNKDERRREVIAWKRARTGIPFVDAALREMYVTGRMHNRA 346 Query: 354 RMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTI 413 RMI AS+L K L+ W+IG ++F L D D ASN GWQW A +G D+ PYFR+FNP Sbjct: 347 RMIVASYLTKHLMCHWKIGLDWFEDCLTDWDPASNALGWQWTAGSGPDAAPYFRVFNPIT 406 Query: 414 QGKRFDPQGTFIRHWLPELNNVPTQ----YIHA-PHSWLDKNDLSLNYPLPIVDHKKACH 468 Q ++FDP +IR W+ E PT Y A P SW D YP P+V + Sbjct: 407 QREKFDPDRAYIRRWIAEGEGTPTDTALSYFDAIPESWAMSPDDP--YPEPVVSAEDGRK 464 Query: 469 HTLNQYY 475 L Y Sbjct: 465 AALAAYE 471 >gi|114764326|ref|ZP_01443554.1| deoxyribodipyrimidine photolyase [Pelagibaca bermudensis HTCC2601] gi|114543274|gb|EAU46291.1| deoxyribodipyrimidine photolyase [Roseovarius sp. HTCC2601] Length = 473 Score = 353 bits (907), Expect = 3e-95, Method: Composition-based stats. Identities = 152/487 (31%), Positives = 230/487 (47%), Gaps = 35/487 (7%) Query: 5 TAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYAS 64 + S +VW+R DLR++D+ L+ A S VI VFI + + A + Sbjct: 2 SDTSPIIVWIRRDLRLSDHATLHEA-GKSGRPVIPVFIRDHTVDQ---LGAAPKWRLGLG 57 Query: 65 LLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLE 124 L ++L++KG E LD+ + +++ R Y+ V RD ++ Sbjct: 58 LGCFGEALAEKGSRLILRAGPAR----EVLDALIDETGAGAVWWQRAYDPASVERDTAVK 113 Query: 125 KRLQHR-VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIR 183 L+ R + +SF +L P ++ YKVYTPF +A+ V L + + Sbjct: 114 SALKDREIDARSFAGHLLFEPWTVETKQGGFYKVYTPFWRAVCDRDVPEPLPA----PSK 169 Query: 184 LTGPVTPSNIPRFFDYPFQA--------IDPMFPIGEQNALHILRKFCKEKVYYYVEQRD 235 L P + D+ ++P +GE+ A L F K+ Y + R+ Sbjct: 170 LAAPESWPESDALDDWGLGDAMRRGAAVVEPYVQLGERAAQARLGAFTSGKIADYDKGRN 229 Query: 236 IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLM 295 + A G S LS L++G +SP QCW+ K GA +W EL+WREF HL+ Sbjct: 230 LVAEDGCSTLSENLALGEISPAQCWHAAMR----AKDAGKEGAETWAKELVWREFAYHLL 285 Query: 296 AFYPSVCMGKPFIPWTEKIEWNKDS--HLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRL 353 P + + WN+D + AWK+ TG P +DAA+R++ G MHNR Sbjct: 286 WHTPHLAESN-WREEWAAFPWNEDERRKEVIAWKRARTGIPFVDAALREMYVTGRMHNRA 344 Query: 354 RMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTI 413 RMI AS+L K L+ W+IG ++F L+D D ASN GWQW+A +G D+ PYFR+FNP Sbjct: 345 RMIVASYLTKHLMCHWKIGMDWFEDCLIDWDPASNALGWQWSAGSGPDATPYFRVFNPIT 404 Query: 414 QGKRFDPQGTFIRHWLPELNNVPTQ----YIHA-PHSWLDKNDLSLNYPLPIVDHKKACH 468 Q ++FDP ++ W+ E + P + Y A P SW D + YP PIV + Sbjct: 405 QREKFDPDKVYVDRWIAEGQSNPPKTALSYFDAIPESWAMTPDDA--YPEPIVSAEDGRK 462 Query: 469 HTLNQYY 475 L+ Y Sbjct: 463 AALDAYQ 469 >gi|97048023|sp|P77967|CRYD_SYNY3 RecName: Full=Cryptochrome DASH gi|28374085|pdb|1NP7|A Chain A, Crystal Structure Analysis Of Synechocystis Sp. Pcc6803 Cryptochrome gi|28374086|pdb|1NP7|B Chain B, Crystal Structure Analysis Of Synechocystis Sp. Pcc6803 Cryptochrome Length = 489 Score = 353 bits (907), Expect = 3e-95, Method: Composition-based stats. Identities = 138/483 (28%), Positives = 229/483 (47%), Gaps = 31/483 (6%) Query: 8 SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHG-----ISARQSHFIY 62 LVW RNDLR+ D++ L+ A S + AV+ P Q+ Q +S+F+ Sbjct: 6 PTVLVWFRNDLRLHDHEPLHRALK-SGLAITAVYCYDPRQFAQTHQGFAKTGPWRSNFLQ 64 Query: 63 ASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKL 122 S+ + +SL + G + + Q ++Y+R+ E+ ++ Sbjct: 65 QSVQNLAESLQKVGNKLLVTTGLPE----QVIPQIAKQINAKTIYYHREVTQEELDVERN 120 Query: 123 LEKRLQ-HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADL------R 175 L K+L + K + S L P + + ++T FRK + + + + Sbjct: 121 LVKQLTILGIEAKGYWGSTLCHPEDLPFSIQDLPDLFTKFRKDIEKKKISIRPCFFAPSQ 180 Query: 176 SLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCK--EKVYYYVEQ 233 LP P I+L P ++ +++ F GE L L+ + +++ Y E Sbjct: 181 LLPSPNIKLELTAPPPEFFPQINFDHRSV-LAFQGGETAGLARLQDYFWHGDRLKDYKET 239 Query: 234 RD-IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYR 292 R+ + +S+ SP+L++G LSPR + +K + + + EL+WR+F+R Sbjct: 240 RNGMVGADYSSKFSPWLALGCLSPRFIYQEVKRYEQERV--SNDSTHWLIFELLWRDFFR 297 Query: 293 HLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNR 352 + Y + + + + W +D + W+ G TG+P++DA MR+LN G+M NR Sbjct: 298 FVAQKYGNKLFNRGGL-LNKNFPWQEDQVRFELWRSGQTGYPLVDANMRELNLTGFMSNR 356 Query: 353 LRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPT 412 R ASFL K+L +DWR G E+F S L+D D+ SN G W + A GND+ FR FN Sbjct: 357 GRQNVASFLCKNLGIDWRWGAEWFESCLIDYDVCSNWGNWNYTAGIGNDAR-DFRYFNIP 415 Query: 413 IQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKN------DLSLNYPLPIVDHKKA 466 Q +++DPQGT++RHWLPEL N+P IH P L ++YP P V+ ++ Sbjct: 416 KQSQQYDPQGTYLRHWLPELKNLPGDKIHQPWLLSATEQKQWGVQLGVDYPRPCVNFHQS 475 Query: 467 CHH 469 Sbjct: 476 VEA 478 >gi|30088882|gb|AAP13561.1| cryptochrome 2 [Rana catesbeiana] Length = 543 Score = 353 bits (907), Expect = 3e-95, Method: Composition-based stats. Identities = 135/508 (26%), Positives = 208/508 (40%), Gaps = 41/508 (8%) Query: 1 MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISA--RQS 58 M+ SVH W R LR+ DN AL AA + V V+I P S + Sbjct: 1 MEGPAVSSVH--WFRKGLRLHDNPALLAALRGARC-VRCVYILDPWFAASSSSSGGVNRW 57 Query: 59 HFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVR 118 F+ SL + SL + G + + + VT+L + E Sbjct: 58 RFLLQSLEDLDSSLRKLGSRLFVGRG----QPADVFPRLFKEWGVTRLTFQYYSEPFGKE 113 Query: 119 RDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLV-QADLRSL 177 RD + K + + + S L L+ +++ P Q +V + +L Sbjct: 114 RDAAIMKLAKEAGVEVIVESSHTLY---DLDKIIELNGNSPPLTYKRFQAIVSRMELPRR 170 Query: 178 PVPAI-----------RLTGPVTPSNIPRFFDYPFQAIDP---MFPIGEQNALHILRKFC 223 PVP+I + +P + F +P ++P GE AL L + Sbjct: 171 PVPSITRQQMEKCRAEIKSTHDDTYGVPSLEELGFPRDNPGAAVWPGGETEALARLDRHL 230 Query: 224 KEKVYYYVEQRDIPAIQGT----SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAF 279 + K + +R + LSPYL G LS R + RL+E + + K Sbjct: 231 ERKAWVAHYERPRMNANSLLASPTGLSPYLRFGCLSCRLFYYRLRELYQKVK-KNSPPPL 289 Query: 280 SWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAA 339 S +L+WREF+ P + P +I W+K+ L W +G TGFP IDA Sbjct: 290 SLFGQLLWREFFYTAATNNPKFDQMEG-NPICVQIPWDKNPEALAKWTEGKTGFPWIDAI 348 Query: 340 MRQLNTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAAST 398 M QL GW+H+ R A FL + DL W G + F LLD D + N G W W S Sbjct: 349 MTQLRQEGWIHHLARHAVACFLTRGDLWNSWECGVKVFDELLLDADFSVNAGSWMW-LSC 407 Query: 399 GNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLD------KNDL 452 +F + P G+R DP G ++R +LP L P++YI+ P + + K + Sbjct: 408 SAFFQQFFHCYCPVGFGRRTDPSGDYVRRYLPVLKGYPSRYIYEPWNAPESVQKEAKCIV 467 Query: 453 SLNYPLPIVDHKKACHHTLNQYYAAKKQ 480 ++YP P+V+H +A + + +Q Sbjct: 468 GVDYPKPVVNHAEASRLNIERMKQTYQQ 495 >gi|325676163|ref|ZP_08155844.1| deoxyribodipyrimidine photolyase [Rhodococcus equi ATCC 33707] gi|325553073|gb|EGD22754.1| deoxyribodipyrimidine photolyase [Rhodococcus equi ATCC 33707] Length = 457 Score = 353 bits (906), Expect = 3e-95, Method: Composition-based stats. Identities = 147/475 (30%), Positives = 218/475 (45%), Gaps = 35/475 (7%) Query: 6 AMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASL 65 A++ LVW R DLR+ D L AA + + +F+ + F+Y SL Sbjct: 14 AVTQSLVWFRRDLRVGDLPTLSAAGERA----LGLFVLDDRLLG--PSGGPRRDFLYRSL 67 Query: 66 LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125 + + L + +V + D +E + ++ + Y RD + Sbjct: 68 SALDEQLDGRLLVVR-------GDPVEMVPLVAKAIGAQEVHVSADYGPYGRERDAAVA- 119 Query: 126 RLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185 V + + PG + YKV+TP+ K + + +A + + Sbjct: 120 ---EHVDLVTTGSPYAVAPGRVTKDDGSPYKVFTPWFKRWLDHGWRAPASTGADTLDWID 176 Query: 186 GPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245 + R +A P GE AL FC + + Y +RD P + TS++ Sbjct: 177 PDDVDVSKARTAIPAPEASGPA--AGEGAALERWSAFCDDDLIRYDAERDRPDLDTTSRM 234 Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305 S YL G + PR DL K GA + ++ WR+FY ++ P + Sbjct: 235 SVYLKFGNIHPRTML-------ADLARKRSHGAEQYRRQVAWRDFYADILFQRPDSAR-R 286 Query: 306 PFIPWTEKIEWNKDSH---LLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLV 362 + + + + + AW +G TGFPI+DA MRQL + GWMHNR+RMI ASFLV Sbjct: 287 NYDAKFDAMRHDTGRDADAMFAAWCEGRTGFPIVDAGMRQLLSEGWMHNRVRMIVASFLV 346 Query: 363 KDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQG 422 KDL + W G +FM L+DGDLASN GWQW A +G D+ PYFR+FNPT QG++FDP G Sbjct: 347 KDLHLPWWRGARFFMQHLVDGDLASNQHGWQWTAGSGTDASPYFRVFNPTGQGEKFDPTG 406 Query: 423 TFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477 ++R W+PEL V + +H K+ YP PIVDH + L +Y A Sbjct: 407 DYVRRWVPELRGVRGKAVHT-----LKDARPQAYPDPIVDHAEERREALARYGAL 456 >gi|146303224|ref|YP_001190540.1| deoxyribodipyrimidine photo-lyase type I [Metallosphaera sedula DSM 5348] gi|145701474|gb|ABP94616.1| deoxyribodipyrimidine photo-lyase type I [Metallosphaera sedula DSM 5348] Length = 435 Score = 353 bits (906), Expect = 4e-95, Method: Composition-based stats. Identities = 154/465 (33%), Positives = 223/465 (47%), Gaps = 47/465 (10%) Query: 12 VWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGI-SARQSHFIYASLLQVQK 70 R DLR+ DN L A D +V+ VF+ P Q + SA F+ SLL + Sbjct: 5 FVFRRDLRLDDNTCLLRALQECD-EVVPVFVLDPRQLGDNPYKSAFALGFMVDSLLDLDM 63 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130 L + Q E +V +++N Y + RD + + + R Sbjct: 64 QLKHRSSRLHILQGYPEKVLPE--------LKVEAIYFNEDYTPFSLNRDNAIRETM--R 113 Query: 131 VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTP 190 KS +D +LL P + Y V+T F + V+ +++ + L P T Sbjct: 114 GRVKSCED-LLLTPKDFFVRKGKPYTVFTHFYNDARKLEVRKPMKNDMRNYLTLDLPGTE 172 Query: 191 SNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLS 250 ++ P G Q L L + + Y R+ P ++GT++LSPY+ Sbjct: 173 VLKLE--------VERGIPGGRQEGLKRLER---ARNLNYSM-RNFPGVEGTTKLSPYIK 220 Query: 251 IGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPW 310 GV+SPR+ + + EE +L WR+FY L + P V G + Sbjct: 221 FGVVSPREVYWAVNEEIR--------------RQLYWRDFYTLLAYYNPHV-FGHSYKRE 265 Query: 311 TEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWR 370 + I W + L+AWKQG TG+PI+DA MR+LN G+MHNR RMITASFLVK L VDWR Sbjct: 266 YDCIPWKWNEAHLEAWKQGKTGYPIVDAGMRELNETGFMHNRTRMITASFLVKVLHVDWR 325 Query: 371 IGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLP 430 IGE YF ++L+D D + NNG WQW ASTG D FR+FNP +Q ++FDP +I+ W+P Sbjct: 326 IGERYFATKLVDYDPSVNNGNWQWVASTGAD--YMFRVFNPWLQQRKFDPDAVYIKTWVP 383 Query: 431 ELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYY 475 EL ++P + IH + + YP PIVD+ + Y Sbjct: 384 ELKDLPAEKIHEIYRFKVS-----GYPSPIVDYSEEVKKARKMYE 423 >gi|254465900|ref|ZP_05079311.1| deoxyribodipyrimidine photolyase [Rhodobacterales bacterium Y4I] gi|206686808|gb|EDZ47290.1| deoxyribodipyrimidine photolyase [Rhodobacterales bacterium Y4I] Length = 474 Score = 353 bits (906), Expect = 4e-95, Method: Composition-based stats. Identities = 146/485 (30%), Positives = 236/485 (48%), Gaps = 26/485 (5%) Query: 5 TAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYAS 64 ++ + + W+R DLR+ DN AL AA S A V+ V+I + + A + Sbjct: 2 SSRAPVIWWIRRDLRLCDNPALTAAAE-SGAPVLPVYILD---EQDEALGAAPKFRLGLG 57 Query: 65 LLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLE 124 L + L++ G + ++ L + + ++R Y+ +RRD ++ Sbjct: 58 LDHFGQELAKAGSCLILRRGK----ALRVLQDLIEETGAGAVHWSRLYDPQAIRRDSEIK 113 Query: 125 KRLQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIR 183 + L+ + + KS +L P ++ A MYKVYTPF KA+ V + L + A Sbjct: 114 QTLKEQGVAVKSHGGRLLFEPWTVETKAGGMYKVYTPFWKAVRSRDVDSLLPAPGKIAAP 173 Query: 184 LTGPVT----PSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAI 239 P + + + +GE AL L F ++ V Y +RD PA Sbjct: 174 DNWPASEDLADWRMAAAMRRGADVVARYCRVGETAALERLETFLEDSVDAYKARRDYPAE 233 Query: 240 QGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYP 299 TS LS L+ G +SP + W+ + + + GA +L E++WREF HLM P Sbjct: 234 DATSGLSENLAWGEISPHRMWH----QGSAAMERGSQGAEHFLKEIVWREFAYHLMYNSP 289 Query: 300 SVCMGKPFIPWTEKIEWNKD-SHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITA 358 + + + ++ W++ + +QAW++G TG+ +DAAMR+L G MHNR RMI A Sbjct: 290 HILT-ESWREEWQEFPWSQKITPQVQAWQRGLTGYGFVDAAMRELYVTGKMHNRARMIVA 348 Query: 359 SFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRF 418 SFL K L+ W+IG ++F L+D D ASN GWQW A +G D+ P+FR+FNP+ Q ++F Sbjct: 349 SFLTKHLMTHWKIGMDWFADTLVDWDPASNALGWQWVAGSGPDAAPFFRVFNPSGQLEKF 408 Query: 419 DPQGTFIRHWLPELNNVPTQ-----YIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQ 473 DP+G + W+ E + P + + AP SW ++ P+V + L Sbjct: 409 DPEGAYTSRWIAEGQDTPPRTALDFFDAAPLSWDLSAGMAPA--EPVVSLQAGRDRALTA 466 Query: 474 YYAAK 478 Y+ A+ Sbjct: 467 YHEAR 471 >gi|118364198|ref|XP_001015321.1| FAD binding domain of DNA photolyase family protein [Tetrahymena thermophila] gi|89297088|gb|EAR95076.1| FAD binding domain of DNA photolyase family protein [Tetrahymena thermophila SB210] Length = 472 Score = 353 bits (906), Expect = 4e-95, Method: Composition-based stats. Identities = 141/475 (29%), Positives = 220/475 (46%), Gaps = 50/475 (10%) Query: 4 TTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQ-HGISARQSHFIY 62 V+L W R DLR+ DN LY A S V+ +FI + + + FI+ Sbjct: 13 QKKQKVNLFWFRRDLRLFDNVGLYHALKES-IPVVPLFIFDKDILNELEDKKDCRVEFIH 71 Query: 63 ASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKL 122 L Q+Q +L + G ++ S + ++ +F NR YE +RD+ Sbjct: 72 NYLSQMQDNLRKHGSTMVVKHS----NAESAFKSLMEEFDISCVFTNRDYEPYAKKRDQQ 127 Query: 123 LEKRLQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPA 181 +++ L + I K F D V+ + +KVYTPF K I L + D +S + Sbjct: 128 IKEILNSKGIGFKDFKDQVIFEAKEVHQDDGSAFKVYTPFSKKWISLLSEPDYQSYKSES 187 Query: 182 I--RLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAI 239 + P FQ FP L + E V Y + RD P I Sbjct: 188 LMNNYWKSQVEVPFPTLEQIGFQKTGIEFPP------SQLDE---ELVKNYDKTRDYPHI 238 Query: 240 QGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYP 299 + TS +S +L G +S R+ + +L+EL WREF+ ++ +P Sbjct: 239 K-TSLMSVHLRFGTVSIRELVRKAVLLNQK-----------YLDELCWREFFMMMIDQFP 286 Query: 300 SVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITAS 359 + + F K+EW + +AW +G TG+P++DA MRQLN G++ N+LRMI AS Sbjct: 287 -LFATENFKKAYNKVEWRNNPEEFKAWCEGKTGYPLLDAGMRQLNKTGYLPNKLRMIAAS 345 Query: 360 FLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFD 419 FL K+LL+DWR GE YF +L+D DLA+N GGWQW +G D PY R+ +P +Q K++D Sbjct: 346 FLTKNLLIDWRWGERYFAQKLIDYDLAANVGGWQWVNGSGTDQAPYIRVLDPVMQQKKYD 405 Query: 420 PQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQY 474 P +++ W+ + N YP IV+++++ L+ + Sbjct: 406 PDFKYVKTWVEDFNE-------------------DTYPKRIVNYEESRQRALDAF 441 >gi|321474453|gb|EFX85418.1| DNA photolyase 1 [Daphnia pulex] Length = 524 Score = 353 bits (905), Expect = 4e-95, Method: Composition-based stats. Identities = 132/497 (26%), Positives = 200/497 (40%), Gaps = 32/497 (6%) Query: 7 MSVHLVWLRNDLRITDNKALYAACH---NSDAKVIAVFIATPEQWRQHGISARQSHFIYA 63 V + W R LR+ DN AL A S ++ VFI P + + + F+ Sbjct: 4 KPVVIHWFRKGLRLHDNPALLNALEKVGESHYELRPVFILDPWFVKNAKVGPNRWRFLVQ 63 Query: 64 SLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLL 123 SL + +L + G + S E + V KL + E RD+ + Sbjct: 64 SLQDLDDNLKKIGSRLFILKGSP----TETFKKVFKEWNVKKLTFEVDIEPYAKTRDEEI 119 Query: 124 EKRLQHR-VICKSFDDSVLLPPGSILNHAL-QMYKVYTPFRKALIQNLVQADLRSLPVPA 181 +K H V + + + + Y F+ + + + P Sbjct: 120 KKLADHHSVTVVAKVSHTIYDLEKVFKANGNKAPLTYVKFQSVVAKFGTPEKALNAPGKL 179 Query: 182 IRLTGPVTPSNIPRFFDYPFQAID------PMFPIGEQNALHILRKFCKEKVY--YYVEQ 233 + + S+ +D ++ GE AL + K+ ++ + + + Sbjct: 180 PKQCQTLLLSDKYNVPLLEEMQVDLTGLGKELYRGGETEALARMEKYMSQQDWVCKFSKP 239 Query: 234 RDIPA--IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFY 291 P T+ LSPYL G LSPR ++RL E K S S +++WREFY Sbjct: 240 DTSPNSIEPSTTVLSPYLKFGCLSPRLMYHRLHEIIDGR--KHTSPPTSLTGQMLWREFY 297 Query: 292 RHLMAFYPSVCMGKPFIPWTEKIEWNKDSH--LLQAWKQGYTGFPIIDAAMRQLNTIGWM 349 A+ P+ P ++I W D AWK G TG+P IDA M QL T GW+ Sbjct: 298 YTCGAYTPNFNRM-VGNPVCKQIPWKVDPEDEHFVAWKNGRTGYPFIDAIMIQLRTEGWI 356 Query: 350 HNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRI 408 H+ R A FL + DL V W +G++ F LLD D A N G W W S YFR+ Sbjct: 357 HHLARHAVACFLTRGDLWVSWELGQQVFEELLLDADWALNAGNWMW-LSASAFFHSYFRV 415 Query: 409 FNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWL------DKNDLSLNYPLPIVD 462 ++P GK+ D G +I+ +LP L PT+YI+ P + +YP IVD Sbjct: 416 YSPVAFGKKTDKHGDYIKKYLPVLKKFPTEYIYEPWKAPLSVQQTAGCIIGKDYPKRIVD 475 Query: 463 HKKACHHTLNQYYAAKK 479 H L + A + Sbjct: 476 HDVVMKENLAKMKKAYQ 492 >gi|18858473|ref|NP_571863.1| cryptochrome 5 [Danio rerio] gi|8698596|dbj|BAA96852.1| 6-4 photolyase [Danio rerio] Length = 519 Score = 353 bits (905), Expect = 4e-95, Method: Composition-based stats. Identities = 127/494 (25%), Positives = 197/494 (39%), Gaps = 32/494 (6%) Query: 10 HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69 + W R LR+ DN AL AA + + +F+ P + I + F+ +L + Sbjct: 5 TIHWFRKGLRLHDNPALIAALKDC-RHIYPLFLLDPWFPKNTRIGINRWRFLIEALKDLD 63 Query: 70 KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH 129 SL + + S E L Q ++T+L + E RDK + K + Sbjct: 64 SSLKKLNSRLFVVRGSP----TEVLPKLFKQWKITRLTFEVDTEPYSQSRDKEVMKLAKE 119 Query: 130 -RVICKSFDDSVLLPPGSILN-HALQMYKVYTPFRKALIQNLVQADLRSLP-------VP 180 V L I++ + + Y + + P V Sbjct: 120 YGVEVTPKISHTLYNIDRIIDENNGKTPMTYIRLQSVVKAMGHPKKPIPAPTNEDMRGVS 179 Query: 181 AIRLTGPVTPSNIPRFFDYPFQAIDP---MFPIGEQNALHILRKFCKEKVY--YYVEQRD 235 IP D +FP GEQ AL L + + + + + + Sbjct: 180 TPLSDDHEEKFGIPTLEDLGLDTSSLGPHLFPGGEQEALRRLDEHMERTNWVCKFEKPKT 239 Query: 236 IPA--IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRH 293 P I T+ LSPY+ G LS R W RL + + S +L+WREF+ Sbjct: 240 SPNSLIPSTTVLSPYVRFGCLSARTFWWRLADVYRGKT--HSDPPVSLHGQLLWREFFYT 297 Query: 294 LMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRL 353 P+ + +++W+ + L AW++ TGFP ID M QL GW+H+ Sbjct: 298 TAVGIPNFNKMEG-NSACVQVDWDNNPEHLAAWREARTGFPFIDTIMTQLRQEGWIHHLA 356 Query: 354 RMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPT 412 R A FL + DL + W G++ F LLD D + N G WQW S YFR+++P Sbjct: 357 RHAVACFLTRGDLWISWEEGQKVFEELLLDSDWSLNAGNWQW-LSASTFFHQYFRVYSPI 415 Query: 413 IQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDK------NDLSLNYPLPIVDHKKA 466 GK+ D G +I+ +LP L PT+YI+ P + +YP PIVDH+ Sbjct: 416 AFGKKTDKHGDYIKKYLPVLKKFPTEYIYEPWKAPRSVQERAGCIVGKDYPRPIVDHEVV 475 Query: 467 CHHTLNQYYAAKKQ 480 + + AA + Sbjct: 476 HKKNILRMKAAYAK 489 >gi|254430204|ref|ZP_05043907.1| deoxyribodipyrimidine photolyase [Cyanobium sp. PCC 7001] gi|197624657|gb|EDY37216.1| deoxyribodipyrimidine photolyase [Cyanobium sp. PCC 7001] Length = 504 Score = 353 bits (905), Expect = 4e-95, Method: Composition-based stats. Identities = 174/515 (33%), Positives = 233/515 (45%), Gaps = 47/515 (9%) Query: 1 MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHF 60 M A T L W R DLR+ DN L AA + A V VF+ P ++ + F Sbjct: 1 MAAETGAERWLFWHRRDLRLADNLGLAAAAAATPA-VTGVFVLDPGILEAADLAPARLWF 59 Query: 61 IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120 + SL ++ + G + D L R L +NR E RD Sbjct: 60 LAESLRELAERWRAAGSRLLVLRG----DPAVVLPQLAAALRAPVLAWNRDVEPYGRERD 115 Query: 121 KLLEKRLQHRVICKSF-DDSVLLPPGSILNHALQMYKVYTPFRKALIQNLV--------- 170 + + LQ D +L+ P ++ Y+VY PF + + Sbjct: 116 RRVAAALQAEGRRVLVDWDQLLIAPEALRTGQGDPYRVYGPFWRNWRGQVAARADLGSAA 175 Query: 171 ---------QADLRSLPVPAIR-----------LTGPVTPSNIPRFFDYPFQAIDPMFPI 210 LR L P ++ L P + + +P + P P Sbjct: 176 AGGLEPVAAPTGLRDLGEPELQALHRSTASPLPLVEPDAATGLHLPHSFPGADLCPCRP- 234 Query: 211 GEQNALHILRKFCKEKVYY-----YVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKE 265 GE A L+ FC Y + R++P GTS LS L G LSPRQ W ++ Sbjct: 235 GEAAAQEQLQAFCDGGCDGGPLLAYEQGRNLPGEAGTSGLSAALKFGTLSPRQAWAAAQQ 294 Query: 266 EFVDLL-IKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQ 324 + + W EL WREFY+ + +P + G P+ P ++ W D + Sbjct: 295 ARALARSTEAEQSITVWEQELAWREFYQQALFHFPELAEG-PYRPQWKRFPWENDEGRFE 353 Query: 325 AWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGD 384 AW+QG TG PI+DAAMRQLN GWMHNR RMI ASFLVKDL+ DWR GE FM+QL+DGD Sbjct: 354 AWRQGLTGMPIVDAAMRQLNESGWMHNRCRMIVASFLVKDLICDWRWGERAFMAQLVDGD 413 Query: 385 LASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPH 444 LA+NNGGWQW+AS+G D P RIFNP Q +FDP+ ++IR WLPEL +V T + Sbjct: 414 LAANNGGWQWSASSGMDPKP-LRIFNPATQATKFDPEASYIRTWLPELRHVATADL---I 469 Query: 445 SWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479 S YP PIV+HK Y A + Sbjct: 470 SGAIPPLERRGYPEPIVEHKIQQARFKALYAALPR 504 >gi|218191029|gb|EEC73456.1| hypothetical protein OsI_07758 [Oryza sativa Indica Group] gi|222623102|gb|EEE57234.1| hypothetical protein OsJ_07222 [Oryza sativa Japonica Group] Length = 719 Score = 353 bits (905), Expect = 5e-95, Method: Composition-based stats. Identities = 142/508 (27%), Positives = 229/508 (45%), Gaps = 33/508 (6%) Query: 3 ATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIY 62 A A +VW R DLR+ DN A AA + +V+ V++ PE+ + ++ Sbjct: 13 AGEAGVRTVVWFRRDLRVEDNPA-LAAAARAAGEVVPVYVWAPEEDGPYYPGRVSRWWLS 71 Query: 63 ASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQY---------E 113 SL + SL + G + S D++ L T LF+N Y + Sbjct: 72 QSLKHLDASLRRLGASRLVTRRSA--DAVVALIELVRSIGATHLFFNHLYGSIDPEFQID 129 Query: 114 INEVRRDKLLEKRL-QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQA 172 + RD ++ L + +SF+ +L P +++ + ++ PF + A Sbjct: 130 PLSLVRDHRVKALLTAEGIAVQSFNADLLYEPWEVVDDDGCPFTMFAPFWDRCLCMPDPA 189 Query: 173 DLRSLP--VPAIRLTGPVTPSNIPRFFDYPFQAIDPM----FPIGEQNALHILRKFCKEK 226 P + L PS+ F D + + + + G QNA L F Sbjct: 190 APLLPPKRIAPGELPARRCPSDELVFEDESERGSNALLARAWSPGWQNADKALAAFLNGP 249 Query: 227 VYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEF----VDLLIKPKSGAFSWL 282 + Y R TS LSPYL G LS R+ +++++ + + +L Sbjct: 250 LMDYSVNRKKADSASTSLLSPYLHFGELSVRKVFHQVRMKQLMWSNEGNHAGDESCVLFL 309 Query: 283 NELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQ 342 + RE+ R+L +P + KP + W D + W+QG TG+P++DA MR+ Sbjct: 310 RSIGLREYSRYLTFNHP-CSLEKPLLAHLRFFPWVVDEVYFKVWRQGRTGYPLVDAGMRE 368 Query: 343 LNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDS 402 L GW+H+R+R++ +SF VK L + WR G +YF LLD DL S+ GWQ+ + + D Sbjct: 369 LWATGWLHDRIRVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGSLPDG 428 Query: 403 VPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKN------DLSLNY 456 RI NP ++G +FDP G ++R WLPEL +PT++IH P + +L NY Sbjct: 429 RELDRIDNPQLEGYKFDPHGEYVRRWLPELARLPTEWIHHPWDAPESVLQAAGIELGSNY 488 Query: 457 PLPIVDHKKACHH---TLNQYYAAKKQS 481 PLPIV+ A L++ + + S Sbjct: 489 PLPIVELDAAKTRLQDALSEMWELEAAS 516 >gi|332021530|gb|EGI61895.1| Cryptochrome-1 [Acromyrmex echinatior] Length = 671 Score = 353 bits (905), Expect = 5e-95, Method: Composition-based stats. Identities = 119/494 (24%), Positives = 184/494 (37%), Gaps = 32/494 (6%) Query: 10 HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69 + W R LR+ DN +L + VF+ P + + F+ L + Sbjct: 25 TVHWFRKGLRLHDNPSLKEGLAGASTF-RCVFVLDPWFAGSTNVGINKWRFLLQCLEDLD 83 Query: 70 KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH 129 SL + + + L + T L + E RD + + Sbjct: 84 CSLRKLNSRLFVIRG----QPADALPKLFKEWGTTDLTFEEDPEPFGRVRDHNISALCKE 139 Query: 130 RVI-CKSFDDSVLLPPGSIL-NHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187 I L I+ ++ + Y F+ + A + Sbjct: 140 LGISVVQRVSHTLYRLDEIIERNSGKPPLTYHQFQNVVAGMDPPEPPAPTVTAACIGSAY 199 Query: 188 VTPSNIP-------RFFDYPFQA---IDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIP 237 + + F + P++ GE AL L + + K + R Sbjct: 200 TPLKDDHDDHYGVPTLEELGFDTESLLPPVWVGGESEALARLERHLERKAWVASFGRPKM 259 Query: 238 AIQGT----SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRH 293 Q + LSPYL G LS R + +L + + IK S +L+WREF+ Sbjct: 260 TPQSLLPSQTGLSPYLRFGCLSTRLFYYQLTDLYKK--IKKAVPPLSLHGQLLWREFFYC 317 Query: 294 LMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRL 353 P+ + P +I W+K+ L W G TGFP IDA M QL GW+H+ Sbjct: 318 AATKNPNFDKMQG-NPICVQIPWDKNVEALAKWANGQTGFPWIDAIMTQLREEGWIHHLA 376 Query: 354 RMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPT 412 R A FL + DL + W G + F LLD D + N G W W S + +F + P Sbjct: 377 RHAVACFLTRGDLWISWEEGMKVFDELLLDADWSVNAGMWMW-LSCSSFFQQFFHCYCPV 435 Query: 413 IQGKRFDPQGTFIRHWLPELNNVPTQYIHAPH------SWLDKNDLSLNYPLPIVDHKKA 466 G++ DP G +IR +LP L N PT+YIH P K + Y LP+V+H K+ Sbjct: 436 RFGRKADPNGDYIRRYLPVLKNFPTRYIHEPWNAPLSIQHAAKCIIGKEYSLPMVNHNKS 495 Query: 467 CHHTLNQYYAAKKQ 480 + + +Q Sbjct: 496 SRINIERMKQVYQQ 509 >gi|289617143|emb|CBI56211.1| unnamed protein product [Sordaria macrospora] Length = 554 Score = 352 bits (904), Expect = 6e-95, Method: Composition-based stats. Identities = 157/466 (33%), Positives = 236/466 (50%), Gaps = 59/466 (12%) Query: 11 LVWLRNDLRITDNKALYAA---CHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67 + W + DLR+ DN++L+ A + +I +++ +PE H + + F+ +L Sbjct: 112 VHWFKMDLRLHDNRSLWLASQKAQEAGVPLICLYVLSPEDLEAHLRAPIRVDFMLRTLEI 171 Query: 68 VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127 +++ L GI + YE++E+RR+ L K Sbjct: 172 LKRDLEALGIPL----------------------------WIETYEVDELRREARLVKIF 203 Query: 128 QHR---VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL 184 ++ + D+ ++ PG++ + + Y VY+P+ +A I+++ + Sbjct: 204 AEGDEKMVAEVVHDTCVVMPGALKSGSGGQYAVYSPWYRAWIKHVEENPDCLEIYEKPLP 263 Query: 185 TGPVTPSNIPRFFDYPFQAI----------------DPMFPIGEQNALHILRKFCKEKVY 228 P T S F P ++P GE AL L KFC E + Sbjct: 264 NPPSTKSKYAHLFTCPIPPAPENKNLPDNDETKARYRALWPAGEHEALKRLHKFCDENIG 323 Query: 229 YYVEQRDIPAIQ-GTSQLSPYLSIGVLSPRQCWNRLKEEFV-DLLIKPKSGAFSWLNELI 286 Y E+RDIP+++ GTS+LS + + G LS R ++ L G W++E+ Sbjct: 324 KYAERRDIPSVEGGTSKLSVHFASGTLSARTAIRAARDRNNTKRLNGGNEGIQRWISEVA 383 Query: 287 WREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTI 346 WREFYRH++ +P VCM KPF P I W+ + AW G TG+PIIDAAMRQ+ + Sbjct: 384 WREFYRHVLVGWPYVCMNKPFKPLYSNITWSYNPTHFHAWTSGQTGYPIIDAAMRQVLST 443 Query: 347 GWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYF 406 G+M NRLRMI ASFL KDLL+DWR+GE YFM L+DGD ASNNGGW +AAS G D PYF Sbjct: 444 GFMPNRLRMIVASFLAKDLLIDWRMGERYFMEHLIDGDFASNNGGWGFAASVGVDPQPYF 503 Query: 407 RIFNPTIQGKRFDPQGTFIRHWLPELNNVP-------TQYIHAPHS 445 R+FNP +Q ++FD G +IR W+ EL ++ +IH P+ Sbjct: 504 RVFNPLLQSEKFDEGGEYIRRWVEELRDLEGGKLGGKGGWIHDPYG 549 >gi|148533563|gb|ABQ84983.1| antennal cryptochrome 2 [Spodoptera littoralis] Length = 625 Score = 352 bits (903), Expect = 7e-95, Method: Composition-based stats. Identities = 130/493 (26%), Positives = 196/493 (39%), Gaps = 32/493 (6%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 + W R LR+ DN AL ++ A VFI P + + F+ L + Sbjct: 40 VHWFRKGLRLHDNPALKEGLLDA-ATFRCVFIIDPWFASSSNVGINKWRFLLQCLEDLDS 98 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH- 129 SL + + + L + T L + E RD + + + Sbjct: 99 SLRKLNSRLFVVRG----QPADALPKLFREWGTTALTFEEDPEPYGRVRDHNIMSKCREV 154 Query: 130 RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189 + S L I+ + +ALI ++ P+ A L G T Sbjct: 155 GITVTSRVSHTLYKLDQIIERNGGKAPLTYHQFQALIASMPPPPPAEAPISAQMLNGATT 214 Query: 190 PS--------NIPRFFDYPFQAID---PMFPIGEQNALHILRKFCKEKVYYYVEQRDIPA 238 P +P + F+ P++ GE AL L + + K + R Sbjct: 215 PLTDDHDDRFGVPTLEELGFETEGLKPPVWIGGESEALARLERHLERKAWVASFGRPKMT 274 Query: 239 IQGT----SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHL 294 Q + LSPYL G LS R + +L E + +K S +++WREF+ Sbjct: 275 PQSLLASQTGLSPYLRFGCLSTRLFYYQLTELYK--RVKRVRPPLSLHGQILWREFFYCA 332 Query: 295 MAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLR 354 P+ + P +I W K+ L W G TGFP IDA M QL GW+H+ R Sbjct: 333 ATRNPNFDRMEG-NPICVQIPWEKNQEALAKWASGQTGFPWIDAIMIQLREEGWIHHLAR 391 Query: 355 MITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTI 413 A FL + DL + W G + F LLD D + N G W W S + +F + P Sbjct: 392 HAVACFLTRGDLWISWEEGMKVFDELLLDADWSVNAGMWMW-LSCSSFFQQFFHCYCPVR 450 Query: 414 QGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLD------KNDLSLNYPLPIVDHKKAC 467 G++ DP G FIR ++P L N+PT+YIH P + + + +YPLP+VDH KA Sbjct: 451 FGRKTDPNGDFIRRYIPALKNMPTRYIHEPWVAPESVQQSARCIIGRDYPLPMVDHSKAS 510 Query: 468 HHTLNQYYAAKKQ 480 + + Q Sbjct: 511 QVNIERIKQVYAQ 523 >gi|255720052|ref|XP_002556306.1| KLTH0H09922p [Lachancea thermotolerans] gi|238942272|emb|CAR30444.1| KLTH0H09922p [Lachancea thermotolerans] Length = 574 Score = 352 bits (903), Expect = 7e-95, Method: Composition-based stats. Identities = 160/512 (31%), Positives = 247/512 (48%), Gaps = 38/512 (7%) Query: 1 MKATTAMSVHLVWLRNDLRITDNKALYAAC--------HNSDAKVIAVFIATPEQWRQHG 52 + A +S + W R DLR+ DN AL A DA++IA++ WR H Sbjct: 65 LPAKADISAVVHWFRTDLRVRDNAALSNAIKLLREIRGQKKDAQLIALYTINEHDWRAHL 124 Query: 53 ISARQSHFIYASLLQVQKSLSQKGIVFQYHQ-------CSNFDDSIEWLDSYCL--QQRV 103 S + F +L +++ L Q + + S + ++W+ C+ Q Sbjct: 125 DSGWKLTFALNALESLREMLKQMNVALVVRKFESKKPLLSRSSEFVDWVKEQCVSLAQGN 184 Query: 104 TKLFYNRQYEINEVRRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRK 163 + N QYE +E+ RD L + + + + D ++ PGS+ Y V+TP+ K Sbjct: 185 VLVTANAQYETDELYRDLKLFDKQDEQFRFQVYHDQCIVQPGSLTTGKGSQYTVFTPWYK 244 Query: 164 ALIQNLVQAD--LRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMF-----------PI 210 ++ L ++ + A+ V S + +F ++ D P Sbjct: 245 RWVEYLKSHKQGKEAIKIHAVDQESKVNES-LAKFESEAYELSDEFLAYLPCDKLEVPPA 303 Query: 211 GEQNALHILRKFCKEKVYY-YVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVD 269 E +A +L++F + Y E++D ++ TS LS Y++ G++S R+ NR E D Sbjct: 304 TEADAHELLQEFISSGNAHKYNEKKDTLSLDSTSHLSCYITSGLISTREVVNRAFHENGD 363 Query: 270 LL----IKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQA 325 L IK + +++ E+ WR+FY+H+M +P + M T I+W D Sbjct: 364 SLMRRDIKQNNSVENFIKEVAWRDFYKHVMCNWPYMSMEIAIKFETMDIKWENDEEKFSK 423 Query: 326 WKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDL 385 W G TG P++DA MR+L G++ NR RMI ASFL K+LLVDWR GE +F LLD DL Sbjct: 424 WCLGETGLPVVDAIMRKLLYTGYISNRCRMIVASFLSKNLLVDWRWGERWFRKHLLDADL 483 Query: 386 ASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHS 445 ASN GGW + +STG D+ PYFRIFN +Q +R+DP G F++ W+PEL + I Sbjct: 484 ASNAGGWGFCSSTGIDAQPYFRIFNMKLQCERYDPDGKFVKMWVPELKDADNVRIIREGR 543 Query: 446 WLDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477 + D YP PIVD K + L + A Sbjct: 544 --SEKDAVDGYPSPIVDLKDSRERALEAFREA 573 >gi|222622395|gb|EEE56527.1| hypothetical protein OsJ_05816 [Oryza sativa Japonica Group] Length = 551 Score = 352 bits (903), Expect = 9e-95, Method: Composition-based stats. Identities = 132/500 (26%), Positives = 210/500 (42%), Gaps = 31/500 (6%) Query: 12 VWLRNDLRITDNKALYAACHNSD-AKVIAVFIATPEQWRQHGISA---------RQSHFI 61 VW R LR+ DN AL AA A++ VF+ P R + + F+ Sbjct: 17 VWFRKGLRVHDNPALDAARRGGAVARLYPVFVLDPRYLRPDQAAPSPGSARAGVARVRFL 76 Query: 62 YASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDK 121 SL + L + G + + D + + + KL + E + RDK Sbjct: 77 LESLSDLDARLRRLGSRLLLLRARDDGDVAGTVCAALKDWNIGKLCFESDTEPYALARDK 136 Query: 122 LLEK-RLQHRVICKSFDDSVLLPPGSIL-NHALQMYKVYTPFRKALIQNLVQADLRSLPV 179 + + S L P I+ + + Y F + + Sbjct: 137 KVMDFAAASGIDVFSPVSHTLFDPAEIIEKNGGRPPMTYQSFVAIAGEPPEPIMEEYSEL 196 Query: 180 PAIRLTGPVTPSNIPRFFDYPFQAID----PMFPIGEQNALHILRKFCKEKVY--YYVEQ 233 P + TG +PR + + I +F GE AL +R+ +K + + + Sbjct: 197 PPVGDTGEYELLPVPRVEELGYGDISQEDLSLFRGGETEALKRMRESLHDKEWVAKFEKP 256 Query: 234 RDIPAI---QGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREF 290 + P+ T+ LSPYL G LS R ++ +++ + K + S +L+WR+F Sbjct: 257 KGDPSAFLKPATTVLSPYLKFGCLSSRYFYHCIQDIYRSTK-KHTNPPVSLTGQLLWRDF 315 Query: 291 YRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMH 350 + + P+ K ++I W ++ L AW+ G TG+P IDA M QL GWMH Sbjct: 316 FYTVAFGTPNFDQMKG-NKICKQIPWTENEELFPAWRDGRTGYPWIDAIMIQLRKWGWMH 374 Query: 351 NRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIF 409 + R A FL + DL + W G + F L+D D A NNG W W S + Y RI+ Sbjct: 375 HLARHSVACFLTRGDLFIHWEKGRDVFERLLIDSDWAINNGNWMW-LSCSSFFYQYHRIY 433 Query: 410 NPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWL------DKNDLSLNYPLPIVDH 463 +PT GK++DP G +IRH++P L ++P +YI+ P + + +YP P+VDH Sbjct: 434 SPTSFGKKYDPNGNYIRHFIPVLKDMPKEYIYEPWTAPLSIQKKANCIIGKDYPKPVVDH 493 Query: 464 KKACHHTLNQYYAAKKQSLL 483 A A + L Sbjct: 494 AIASKECKKMMGEAYASNRL 513 >gi|172170|gb|AAA34875.1| photolyase (EC 4.1.99.3) [Saccharomyces cerevisiae] Length = 565 Score = 352 bits (903), Expect = 9e-95, Method: Composition-based stats. Identities = 160/504 (31%), Positives = 249/504 (49%), Gaps = 46/504 (9%) Query: 7 MSVHLVWLRNDLRITDNKALYAAC--------HNSDAKVIAVFIATPEQWRQHGISARQS 58 +S + W RNDLR+ DN LY + N+ AK+ AV++ + WR H S + Sbjct: 74 VSTAMHWFRNDLRLYDNVGLYKSVALFQQLRQKNAKAKLYAVYVINEDDWRAHMDSGWKL 133 Query: 59 HFIYASLLQVQKSLSQKGIVFQYHQ-------CSNFDDSIEWLDSYCLQQR---VTKLFY 108 FI +L +Q+SL++ I + SN + +E+ C+ T + Sbjct: 134 MFIMGALKNLQQSLAELHIPLLLWEFHTPKSSLSNTKEFVEFFKEKCMNVSSGTGTIITA 193 Query: 109 NRQYEINEVRRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQN 168 N +Y+ +E+ RD L + HR+ K + DS ++ PG I Y V+TP+ K + Sbjct: 194 NIEYQTSELYRDIRLLENEDHRLQLKYYHDSCIVAPGLITTDRGTNYSVFTPWYKKWVLY 253 Query: 169 LVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFP-----------IGEQNALH 217 + + + + + P+ + + + D + E+ AL Sbjct: 254 VNNYKKSTSEICHLHIIEPLKYNETFELKPFQYSLPDEFLQYIPKSKWCLPDVSEEAALS 313 Query: 218 ILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPR----QCWNRLKEEFVDLLIK 273 L+ F K Y ++D+ + GTS LS Y++ G + R Q + E+ + +K Sbjct: 314 RLKDFLGTKSSKYNNEKDMLYLGGTSGLSVYITTGRIRTRLIVNQAFQSCNEQIMSKALK 373 Query: 274 PKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGF 333 S +++ E+ WR+FYRH M +P MG P+ T I+W + + W G TG Sbjct: 374 DNSSTQNFIKEVAWRDFYRHCMCNWPYTSMGMPYRLDTLDIKWENNPVAFEKWCTGNTGI 433 Query: 334 PIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQ 393 PI+DA MR+L G+++NR RMITASFL K+LL+DWR G+ +FM L+DGD +SN GGW Sbjct: 434 PIVDAIMRKLLYTGYINNRSRMITASFLSKNLLIDWRWGKRWFMKHLIDGDSSSNVGGWG 493 Query: 394 WAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLS 453 + +STG D+ PYFR+FN IQ K++DPQ F++ W+PEL +N Sbjct: 494 FCSSTGIDAQPYFRVFNMDIQAKKYDPQMIFVKQWVPEL-------------ISSENKRP 540 Query: 454 LNYPLPIVDHKKACHHTLNQYYAA 477 NYP P+VD K + L Y A Sbjct: 541 ENYPKPLVDLKHSRERALKVYKDA 564 >gi|183981685|ref|YP_001849976.1| DNA photolyase, PhrI [Mycobacterium marinum M] gi|183175011|gb|ACC40121.1| DNA photolyase, PhrI [Mycobacterium marinum M] Length = 447 Score = 352 bits (902), Expect = 1e-94, Method: Composition-based stats. Identities = 152/474 (32%), Positives = 230/474 (48%), Gaps = 31/474 (6%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M+ L+W R DLR+ D+ AL AA + + V+A F+ P G+ R+ F+ SL Sbjct: 1 MTRALLWFRRDLRLGDHPALAAAADSEE--VLACFVVDPRLEASSGL--RRLQFLGDSLR 56 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 Q+ +L + +V + + ++ + + + + RRD+ + Sbjct: 57 QLNDALQGRLLVTRGRPEQRIPLIAKAIE-------ASSVHVSGDFAPFGRRRDERVAAG 109 Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 L RV + L+ PG ++ + Y+V+TPF + +A + P A L Sbjct: 110 LG-RVPLVATGSPYLVSPGRVVKNDGSPYQVFTPFFRKWQDARWRAPAGTGPGSACWLDP 168 Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246 T + P + GE A+ F K+ Y RD P +GTS++S Sbjct: 169 AQTDIEQC---EIPDPGTELDLAAGEAAAIREWTAFRTAKLDRYEHDRDRPDFEGTSRMS 225 Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP 306 +L G + PR V + +GA S+L EL +R+FY ++ +P+ Sbjct: 226 AHLKFGTIHPRTM--------VAGMDLTGTGARSYLRELAFRDFYGAVLHHWPASAWHN- 276 Query: 307 FIPWTEKIEWNKDSH---LLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363 + + I + D+ L + WK G TG+P++DA MRQL G+MHNR+RMI ASFLVK Sbjct: 277 WNSNFDGIVTDTDADARRLFECWKAGETGYPLVDAGMRQLRETGFMHNRVRMIAASFLVK 336 Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423 DL + W+ G +F+ QL DGDLASN GWQW+A G D+ PYFRIFNP+ Q ++FDP G Sbjct: 337 DLHLPWQWGAAWFLDQLTDGDLASNQHGWQWSAGCGTDAAPYFRIFNPSAQAEKFDPAGD 396 Query: 424 FIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477 +IR W+PEL +V +H YP PIVDH L +Y+ Sbjct: 397 YIRRWVPELRDVDN--VHRIQRRGGPC--PSTYPAPIVDHGTERAEALRRYHDI 446 >gi|47218319|emb|CAG04151.1| unnamed protein product [Tetraodon nigroviridis] Length = 625 Score = 352 bits (902), Expect = 1e-94, Method: Composition-based stats. Identities = 126/525 (24%), Positives = 211/525 (40%), Gaps = 58/525 (11%) Query: 7 MSVH-LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSH------ 59 M +H + W R LR+ DN +L + +D+ V V+I P + + Sbjct: 1 MVIHTIHWFRKGLRLHDNPSLKDSLLGADS-VRCVYILDPWFAGSSNVGINRWRICLRSP 59 Query: 60 -----------FIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYC-------LQQ 101 F+ SL + SL + + D ++ + Sbjct: 60 LTVSQEQEALRFLLQSLEDLDSSLRKLNSRLFVIRGQPTDVFPRLFKAHPTVAVYVPQEW 119 Query: 102 RVTKLFYNRQYEINEVRRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPF 161 +++L Y E RD ++K + + S L L+ +++ +P Sbjct: 120 NISRLSYEYDSEPFGKERDAAIKKLASEAGVEVTVCISHTLY---DLDKIIELNGGQSPL 176 Query: 162 RKALIQNLV-QADLRSLPVPAI------RLTGPVTPSNIPR-----FFDYPFQA---IDP 206 Q L+ + D +P +I + T P++ + + + F Sbjct: 177 TYKRFQTLISRMDPVEVPAESITAEIMGKCTTPLSDDHDDKYGVPSLEELGFDTEVLSSA 236 Query: 207 MFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGT----SQLSPYLSIGVLSPRQCWNR 262 ++P GE AL L + + K + +R + LSPYL G LS R + + Sbjct: 237 VWPGGETEALTRLERHLERKAWVANFERPRMNANSLLASPTGLSPYLRFGCLSCRLFYFK 296 Query: 263 LKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHL 322 L + + + K S S +L+WREF+ P + P +I W+++ Sbjct: 297 LTDLYRKVK-KNSSPPLSLYGQLLWREFFYTAATNNPCFDKMEN-NPICVQIPWDRNPEA 354 Query: 323 LQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLL 381 L W +G TGFP IDA M QL GW+H+ R A FL + DL + W G + F LL Sbjct: 355 LAKWAEGRTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWIGWEEGMKVFEELLL 414 Query: 382 DGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIH 441 D D + N G W W S + +F + P G+R DP G +IR +LP L P +YI+ Sbjct: 415 DADWSVNAGSWMW-LSCSSFFQQFFHCYCPVGFGRRTDPNGDYIRRYLPILRGFPAKYIY 473 Query: 442 APHSWLD------KNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQ 480 P + + K + ++YP P+V+H +A + + +Q Sbjct: 474 DPWNAPESVQKAAKCLIGVHYPKPMVNHAEASRLNIERMKQIYQQ 518 >gi|293337104|ref|NP_001170477.1| LOC100384475 [Zea mays] gi|226452137|gb|ACO59248.1| cryptochrome 1 [Zea mays] Length = 699 Score = 351 bits (901), Expect = 1e-94, Method: Composition-based stats. Identities = 140/497 (28%), Positives = 228/497 (45%), Gaps = 22/497 (4%) Query: 3 ATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIY 62 A + +VW R DLR+ DN A AA + +V+ ++ PE+ + ++ Sbjct: 11 AGEPGARAVVWFRRDLRVEDNPA-LAAAPRAAGEVVPAYVWAPEEDGPYYPGRVSRWWLS 69 Query: 63 ASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKL 122 SL + SL + G + S+ D++ L T LF+N Y+ + RD Sbjct: 70 QSLKHLDASLRRLGACRLVTRRSS--DAVVALIDLVRSTGATHLFFNHLYDPLSLVRDHR 127 Query: 123 LEKRLQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPA 181 ++++L I +SF+ +L P +L+ + + ++ PF + A P Sbjct: 128 VKEQLAAEGIDVQSFNADLLYEPWEVLDEDRRPFTMFAPFWNRCLCMPDPAAPLLPPKRI 187 Query: 182 IRLTGPVTPSNIPRFFDYPFQAIDPM----FPIGEQNALHILRKFCKEKVYYYVEQRDIP 237 P + F D + + + + G QNA L F + Y R Sbjct: 188 NSGDLSRCPWDELVFEDESERGSNALLARAWSPGWQNADKALTAFLNGPLMDYSVNRKKA 247 Query: 238 AIQGTSQLSPYLSIGVLSPRQCWNRLKEEF----VDLLIKPKSGAFSWLNELIWREFYRH 293 TS LSPYL G LS R+ +++++ + D + +L + RE+ R+ Sbjct: 248 DSASTSLLSPYLHFGELSVRKVFHQVRMKQLMWSNDGNHAGEESCTLFLRSIGLREYSRY 307 Query: 294 LMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRL 353 L +P KP + W + + W+QG TG+P++DA MR+L GW+H+R+ Sbjct: 308 LTFNHP-CSHEKPLLSHLRFFPWVVNEVYFKVWRQGRTGYPLVDAGMRELWATGWVHDRI 366 Query: 354 RMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTI 413 R++ +SF VK L + WR G +YF LLD DL S+ GWQ+ + + D RI NP Sbjct: 367 RVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGSLPDGRELDRIDNPQF 426 Query: 414 QGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKN------DLSLNYPLPIVDHKKAC 467 +G +FDP G ++R WLPEL +PT++IH P + +L NYPLPIV+ A Sbjct: 427 EGYKFDPHGEYVRRWLPELARLPTEWIHHPWDAPESVLQAAGIELGSNYPLPIVELDAAK 486 Query: 468 ---HHTLNQYYAAKKQS 481 L++ + + S Sbjct: 487 GRLQAALSEMWQLEAAS 503 >gi|118464028|ref|YP_883059.1| Phr protein [Mycobacterium avium 104] gi|118165315|gb|ABK66212.1| Phr protein [Mycobacterium avium 104] Length = 442 Score = 351 bits (900), Expect = 2e-94, Method: Composition-based stats. Identities = 142/472 (30%), Positives = 215/472 (45%), Gaps = 34/472 (7%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 L+W R DLR+ D+ AL AA + + V+A F+ P Q R+ F+ SL + Sbjct: 2 PALLWFRRDLRLHDHPALSAAADSDE--VLACFVLDPRL--QRSSGPRRLQFLGDSLRVL 57 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128 + L + +V + + + + + + + + RRD + L Sbjct: 58 RDELDGRLLVTRGRPDIRIPEIAKAI-------GASSVHVSEDFTPFGKRRDARVRAALA 110 Query: 129 HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188 V + L+PPG + Y+V+TPF + + ++ A L Sbjct: 111 S-VPLVATGSPYLVPPGRVTKPDGSPYQVFTPFLRRWRDTGWRPPAKTGAASARWLDPAR 169 Query: 189 TPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPY 248 + P GE A + + F + Y + R P I+GTS++S + Sbjct: 170 LGITAC---EIPDPGATLDLAAGEAAARNQWKSFVDNGLANYADDRHRPDIEGTSRMSAH 226 Query: 249 LSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFI 308 L G + PR L +GA ++L EL +R+FY ++ P+ + + Sbjct: 227 LKFGTIHPRTLVADL--------DLRTAGARAYLRELAFRDFYADVLHHRPASAW-RNWN 277 Query: 309 PWTEKIEWNKDSHL---LQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365 + I + +AWK G TGFP +DA MRQL G+MHNR+RM ASFLVKDL Sbjct: 278 SAFDAIRTDTGDEAGRRFEAWKAGETGFPFVDAGMRQLRQTGFMHNRVRMTVASFLVKDL 337 Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425 + W+ G +F+ QL+DGDLA+N GWQW A G D+ PYFR+FNP QG++FDP G +I Sbjct: 338 HLPWQWGAHWFLQQLVDGDLANNQHGWQWCAGCGTDAAPYFRVFNPAAQGEKFDPSGDYI 397 Query: 426 RHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477 R W+PEL + L + YP PIVDH L +Y + Sbjct: 398 RRWVPELRCADDPH-------LRTGERPPGYPAPIVDHATERAEALRRYRSM 442 >gi|118617507|ref|YP_905839.1| DNA photolyase, PhrI [Mycobacterium ulcerans Agy99] gi|118569617|gb|ABL04368.1| DNA photolyase, PhrI [Mycobacterium ulcerans Agy99] Length = 447 Score = 350 bits (899), Expect = 2e-94, Method: Composition-based stats. Identities = 152/474 (32%), Positives = 229/474 (48%), Gaps = 31/474 (6%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M+ L+W R DLR+ D+ AL AA + + V+A F+ P G+ R+ F+ SL Sbjct: 1 MTRALLWFRRDLRLGDHPALAAAADSEE--VLACFVVDPRLEASSGL--RRLQFLGDSLR 56 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 Q+ +L + +V + + ++ + + + RRD+ + Sbjct: 57 QLNDALQGRLLVTRGRPEQRIPLIAKAIE-------ASSVHVTGDFAPFGRRRDERVAAG 109 Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 L RV + L+ PG ++ + Y+V+TPF + +A + P A L Sbjct: 110 LG-RVPLVATGSPYLVSPGRVVKNDGSPYQVFTPFFRKWQDARWRAPADTGPGSACWLDP 168 Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246 T + P + GE A+ F K+ Y RD P +GTS++S Sbjct: 169 AQTDIEQC---EIPDPGTELDLAAGEAAAIREWTAFRTAKLDRYEHDRDRPDFEGTSRMS 225 Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP 306 YL G + PR V + +GA S+L EL +R+FY ++ +P+ Sbjct: 226 AYLKFGTIHPRTM--------VAGMDLTGTGARSYLRELAFRDFYGAVLHHWPASAWHN- 276 Query: 307 FIPWTEKIEWNKDSHL---LQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363 + + I + D++ + WK G TG+P++DA MRQL G+MHNR+RMI ASFLVK Sbjct: 277 WNSNFDGIVTDTDANARRVFECWKAGETGYPLVDAGMRQLRETGFMHNRVRMIAASFLVK 336 Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423 DL + W+ G +F+ QL DGDLASN GWQW+A G D+ PYFRIFNP+ Q ++FDP G Sbjct: 337 DLHLPWQWGAAWFLDQLTDGDLASNQHGWQWSAGCGTDAAPYFRIFNPSAQAEKFDPAGD 396 Query: 424 FIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477 +IR W+PEL +V +H YP PIVDH L +Y+ Sbjct: 397 YIRRWVPELRDVDN--VHRIQRRGGPC--PSTYPAPIVDHGTERAEALRRYHDI 446 >gi|255553063|ref|XP_002517574.1| DNA photolyase, putative [Ricinus communis] gi|223543206|gb|EEF44738.1| DNA photolyase, putative [Ricinus communis] Length = 537 Score = 350 bits (899), Expect = 2e-94, Method: Composition-based stats. Identities = 143/508 (28%), Positives = 217/508 (42%), Gaps = 41/508 (8%) Query: 6 AMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHG---------ISAR 56 + S L+W R LR+ DN AL A S V VF+ P Sbjct: 4 SGSSSLMWFRKGLRVHDNPALDYASKGSK-FVYPVFVIDPHYMEPDPNAFSPGSSRAGIN 62 Query: 57 QSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINE 116 + F+ SL+ + SL + G + I L + V KL + + Sbjct: 63 RIRFLLESLVDLDLSLKKLGSKLLVLRGEPSQVLIRCLKIW----DVEKLCFEYDTDSYY 118 Query: 117 VRRDKLLEK-RLQHRVICKSFDDSVLLPPGSIL-NHALQMYKVYTPFRKALIQNLVQADL 174 D +++ R+ S L P I+ + + Y F K Q + Sbjct: 119 QALDAKVKEYASSARIEVFSPVSHTLFNPADIIQKNGGKPPLSYQSFLKVAGQPSWASSP 178 Query: 175 RSLPV---PAIRLTGPVTPSNIPRFFDYPFQAIDPM----FPIGEQNALHILRKFC--KE 225 + P + G S +P + + ++ F GE AL LR+ KE Sbjct: 179 LPTTISSLPPVGDVGSCEISEVPTLEELGYGDVEQDEWAPFRGGESEALKRLREKITNKE 238 Query: 226 KVYYYVEQRDIPAI---QGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWL 282 V + + + P+ T+ LSPYL G LS R + L++ + ++ K S S L Sbjct: 239 WVANFEKPKGDPSAFMKPATTVLSPYLKFGCLSSRYFYQCLQDVYKNVG-KHTSPPVSLL 297 Query: 283 NELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQ 342 +L+WR+F+ + P+ K ++I WN+D LL AW++ TG+P IDA M Q Sbjct: 298 GQLLWRDFFYTVAFGTPNFDQMKENR-ICKQIPWNEDDELLSAWREARTGYPWIDAIMVQ 356 Query: 343 LNTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGND 401 L GWMH+ R A FL + DL V W G F L+D D A NNG W W S + Sbjct: 357 LRKWGWMHHLARHCVACFLTRGDLFVHWEKGRNVFERLLIDSDWAINNGNWLW-LSCSSF 415 Query: 402 SVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWL------DKNDLSLN 455 Y RI++P GK++DP G +I+H+LP L ++P +YI+ P + K + + Sbjct: 416 FYQYNRIYSPISFGKKYDPNGNYIKHFLPVLKDMPKEYIYEPWTAPLSVQTKAKCIIGRD 475 Query: 456 YPLPIVDHKKA---CHHTLNQYYAAKKQ 480 YP P+V H A C L + YA ++ Sbjct: 476 YPKPVVAHDSASKECKKKLAESYALNQK 503 >gi|323358558|ref|YP_004224954.1| deoxyribodipyrimidine photolyase [Microbacterium testaceum StLB037] gi|323274929|dbj|BAJ75074.1| deoxyribodipyrimidine photolyase [Microbacterium testaceum StLB037] Length = 456 Score = 350 bits (899), Expect = 2e-94, Method: Composition-based stats. Identities = 142/478 (29%), Positives = 224/478 (46%), Gaps = 34/478 (7%) Query: 8 SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67 S +VW R+DLR+TDN AL AA + ++A+++ E I +++ SL Sbjct: 3 SPSVVWFRDDLRLTDNPALRAALDR-EEPIVALYLLDEESDGVRSIGGAARWWLHGSLAS 61 Query: 68 VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127 + + L ++G + + + + +F+NR+Y E D ++++L Sbjct: 62 LGERLEERGGRLVLRRGRAAEVV----PAVVEEVGAGAVFWNRRYGGVEREIDAGIKEKL 117 Query: 128 Q-HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 + V SF ++L P ++ A + Y VY+PF +A+ + G Sbjct: 118 RGDGVTVASFAANLLYEPWTVRTQADKPYGVYSPFARAVQKLPAPRPPMPEARKVPGFDG 177 Query: 187 PVTPSNIPRFFDYPFQ-----AIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQG 241 V ++ + P + + + GE L++F + + Y + RD A Sbjct: 178 HVDGDDLAAWDLLPTKPDWAGGLRETWEPGEPAGKARLKEFLDDDLGDYSKYRDEFAGGA 237 Query: 242 TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSV 301 TS LSP L G LSP + W+ + A +L+EL+WREF H+ P + Sbjct: 238 TSNLSPRLRWGELSPYEVWHETIAH--RGSGEHAQSASGFLSELVWREFAWHVTYHSPDI 295 Query: 302 CMGKPFIPWTEKIEWNK-DSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASF 360 + + W + + L+ W+QG TG ++DA MRQL G MHNR+RM+TASF Sbjct: 296 ATVN-WRRNFDAFPWPRLNRAHLETWQQGKTGVAVVDAGMRQLWHTGVMHNRVRMVTASF 354 Query: 361 LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDP 420 L+K+LL+DWR GE++F L+D D ASN WQW A +G D+ PYFR+FNP Q K+FDP Sbjct: 355 LIKNLLIDWRHGEQWFWDCLVDADAASNPFNWQWVAGSGADAAPYFRVFNPDTQRKKFDP 414 Query: 421 QGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478 ++R W PE L N P P+VD + L+ Y + Sbjct: 415 HDAYVREWAPEY-------------------LGENPPEPMVDLGETRKRALDAYAEVR 453 >gi|113954039|ref|YP_729488.1| deoxyribodipyrimidine photolyase [Synechococcus sp. CC9311] gi|113881390|gb|ABI46348.1| deoxyribodipyrimidine photolyase [Synechococcus sp. CC9311] Length = 492 Score = 350 bits (899), Expect = 3e-94, Method: Composition-based stats. Identities = 156/500 (31%), Positives = 226/500 (45%), Gaps = 37/500 (7%) Query: 6 AMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQH----GISARQSHFI 61 S L W R DLR+ DN L AA V V++ P + ++ + F+ Sbjct: 2 TASRVLFWHRRDLRLADNLGLQAA-EAISPAVTGVYVLDPALIQPPESLPPMAPARLWFL 60 Query: 62 YASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDK 121 SL ++Q+ G D ++ L + ++R E RD+ Sbjct: 61 VESLRELQQRWRDVGSRLLV----VAGDPVQLLPRLASLLEAPAVVWSRDVEPYARERDR 116 Query: 122 LLEKRLQHRV-ICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVP 180 + K LQ D +LL P I Y+V+ PF + + ++ ++ P Sbjct: 117 QVAKALQADGCKVLVDWDQLLLAPDLIKTGGGDPYRVFGPFLRNWRGQVERSGPSTVDPP 176 Query: 181 AIRLT----------------GPVTPSNIPRFF----DYPFQAIDPMFP-IGEQNALHIL 219 + G + + ++ F+ D GE A L Sbjct: 177 RALIDLEAEMLEAVLGGEGALGRLCTEGQRQLEQLQVEHGFRGTDLCPSRPGEAAAAAQL 236 Query: 220 RKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKE-EFVDLLIKPKSGA 278 F + Y R+ P + GTS LS LS+G +SPRQ W + + + + + Sbjct: 237 AAFADGALLAYEPDRNFPGMPGTSYLSAGLSVGTVSPRQAWCAAQGVKEIARSDEQQQAI 296 Query: 279 FSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDA 338 W EL WREFY+ + +P + G P+ + W +S +AW++G TG PIIDA Sbjct: 297 TVWEQELCWREFYQQALFHFPELADG-PYREQWRRFPWENNSDWFEAWREGQTGMPIIDA 355 Query: 339 AMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAAST 398 AMRQLN GWMHNR RMI ASFLVKDL+ DWR GE FM +DGDLA+NNGGWQW+AS+ Sbjct: 356 AMRQLNQSGWMHNRCRMIVASFLVKDLICDWRWGERAFMELEVDGDLAANNGGWQWSASS 415 Query: 399 GNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPL 458 G D P RIFNP Q +FD +G +IR W+PEL +V T+ + S +YP Sbjct: 416 GMDPKP-LRIFNPATQATKFDAEGEYIREWVPELRHVNTKDL---ISGEIPALERRSYPE 471 Query: 459 PIVDHKKACHHTLNQYYAAK 478 +++HK Y + Sbjct: 472 QLINHKVQQAKFKALYATIR 491 >gi|157692159|ref|YP_001486621.1| deoxyribodipyrimidine photo-lyase [Bacillus pumilus SAFR-032] gi|157680917|gb|ABV62061.1| deoxyribodipyrimidine photo-lyase [Bacillus pumilus SAFR-032] Length = 466 Score = 350 bits (898), Expect = 3e-94, Method: Composition-based stats. Identities = 160/477 (33%), Positives = 244/477 (51%), Gaps = 25/477 (5%) Query: 18 LRITDNKALYAA---CHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQKSLSQ 74 +R+ D+ AL A + K++A++ P + + + HF + +L K + Sbjct: 1 MRLDDHIALSKAITYAKKHEYKLLALYHLDP-FFTEMKMDLNNEHF-FQNLAYFVKEARK 58 Query: 75 KGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHRVICK 134 + DD + + +F+N RRDK + L+ + I Sbjct: 59 SQVYVHLLH----DDVLRAFQQVMDVYNINAVFFNEDEVGIGQRRDKQVTDFLEKKGIHV 114 Query: 135 S-FDDSVLLPPGSILNHALQMYKVYTPFRKALI----QNLVQADLRSLPVPAIRLTGPVT 189 S + D+ L IL Y+V+TP+ ++ Q +++ D + ++ Sbjct: 115 STWQDTHLHGAQDILKADGSHYQVFTPYYQSWRKQEKQPVIKVDKSFFSSGHMICDESLS 174 Query: 190 PSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYL 249 + D IG + A++ L++F ++++ Y E+RDIP++ GTS+LS +L Sbjct: 175 QKGNEKLRDLIKGCSRKFDQIGTEKAMNTLQQFIQKRLTRYQEKRDIPSVFGTSKLSRFL 234 Query: 250 SIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIP 309 G +S R ++ + EE + G +++ EL WR+FY + A YP K Sbjct: 235 KTGTISIRTIFHAIYEEA----LYEDEGRETFIKELAWRDFYHMIYAHYPE-MKEKEINS 289 Query: 310 WTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDW 369 + + WN D L +AW +G TGFP++DA MRQLN GWMHNRLRM+TASFL KD L+DW Sbjct: 290 AFQGMRWNDDETLFEAWCKGETGFPLVDAGMRQLNEEGWMHNRLRMVTASFLTKDYLIDW 349 Query: 370 RIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWL 429 R GE YF +L+D D ASN GG+QWAAS G D+VPYFRIFNP Q KRFDP G FIR ++ Sbjct: 350 RKGEAYFAKKLVDYDEASNIGGFQWAASVGTDAVPYFRIFNPITQSKRFDPSGEFIRKYV 409 Query: 430 PELNNVPTQYIHAPHSWLDKND------LSLNYPLPIVDHKKACHHTLNQYYAAKKQ 480 PEL ++ ++IH P L YPLP VDH++ ++ + AK+Q Sbjct: 410 PELEHIDEKWIHEPSKMPIDEQLKSGCVLGDTYPLPTVDHQERRKKAISLFEEAKQQ 466 >gi|326780339|ref|ZP_08239604.1| Deoxyribodipyrimidine photo-lyase [Streptomyces cf. griseus XylebKG-1] gi|326660672|gb|EGE45518.1| Deoxyribodipyrimidine photo-lyase [Streptomyces cf. griseus XylebKG-1] Length = 455 Score = 350 bits (897), Expect = 3e-94, Method: Composition-based stats. Identities = 137/473 (28%), Positives = 223/473 (47%), Gaps = 28/473 (5%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 MSV +V +DLR+ DN L AA ++D +V+ +F+ R + + F+ L Sbjct: 1 MSVAVVLFTSDLRLHDNPVLRAALRDAD-EVVPLFVRDDAVHRAGFDAPNRLAFLADCLA 59 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 + L +G + ++ + + ++ RR++ + + Sbjct: 60 ALDAGLRHRGGRLIVRRG----EAATEVRRVAEETGAARVHIAAGVSRYAARREQRIREA 115 Query: 127 LQHRVICKSFDDSVL--LPPGSI-LNHALQMYKVYTPFRKALIQNLVQ---ADLRSLPVP 180 L D+V+ L PG + + V+TP+ + V+ R++ VP Sbjct: 116 LADTGRELHVHDAVVTALAPGRVVPTGGKDHFAVFTPYFRRWEAEGVRGTLTAPRTVRVP 175 Query: 181 AIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ 240 + P+ + + + GE+ ++ + + Y + D A Sbjct: 176 DGVASDPLPDRDSVKNLSPG------LARGGEEAGRKLVTSWLNGPMADYEDGHDDLAGD 229 Query: 241 GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPS 300 TS+LSP+L G +S + +R +E K G +++ +L WR+F+ ++A P Sbjct: 230 ATSRLSPHLHFGTVSAAELVHRARE-------KGGLGGEAFVRQLAWRDFHHQVLADRPD 282 Query: 301 VCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASF 360 + P ++ W D+ + AWK G TG+P++DAAMRQL GWMHNR RM+ ASF Sbjct: 283 ASWS-DYRPRHDR--WRSDADEIDAWKSGLTGYPLVDAAMRQLAHEGWMHNRARMLAASF 339 Query: 361 LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDP 420 L K L VDWR+G +F+ L+DGD+A+N WQW A TG D+ P R+ NP IQGKRFD Sbjct: 340 LTKTLYVDWRVGARHFLDLLVDGDVANNQLNWQWVAGTGTDTRP-NRVLNPVIQGKRFDA 398 Query: 421 QGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQ 473 +G ++R W+PEL V IH P + +L+YP P+VD +A Sbjct: 399 RGDYVRRWVPELAEVEGSAIHEPWKLQGLDRAALDYPDPVVDLAEARARFERA 451 >gi|260829102|ref|XP_002609501.1| hypothetical protein BRAFLDRAFT_230263 [Branchiostoma floridae] gi|229294858|gb|EEN65511.1| hypothetical protein BRAFLDRAFT_230263 [Branchiostoma floridae] Length = 514 Score = 350 bits (897), Expect = 4e-94, Method: Composition-based stats. Identities = 121/499 (24%), Positives = 197/499 (39%), Gaps = 32/499 (6%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVI--AVFIATPEQWRQHGISARQSHFIYAS 64 M + W R LR+ DN +L A + V++ P + + F+ Sbjct: 1 MKSTIHWFRKGLRLHDNPSLRDALQMLQPGDVWRCVYVLDPWFAGSSNVGVNRWRFLLQC 60 Query: 65 LLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLE 124 L + SL + + D + +V+ L + E RD + Sbjct: 61 LEDLDASLRKLNSRLYVIRGQPTD----VFPRLFKEWKVSCLSFEEDSEPFGRERDMAVM 116 Query: 125 KRLQHRVI-CKSFDDSVLLPPGSILN-HALQMYKVYTPFRKALIQNLVQADLRSLPVPAI 182 K + + L I++ + Q Y F+ L + + Sbjct: 117 KLAKEAGVKVILRTSHTLYKLQDIIDVNGGQPPLTYKRFQAILSKMDPPDQPVDSITAST 176 Query: 183 --RLTGPVTPSNIPR-----FFDYPFQAIDP---MFPIGEQNALHILRKFCKEKVYYYVE 232 LT P+ + + + F + ++P GE AL L + + K + Sbjct: 177 VDNLTTPIRDDHDEKFGVPSLEELGFDTDNLNPVVWPGGETEALTRLERHLERKAWVASF 236 Query: 233 QRDIPA----IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWR 288 +R + + LSPYL G LSPR + +L E + + + S +L+WR Sbjct: 237 ERPKMTASSLLASPTGLSPYLRFGCLSPRLFYKKLTELYKKVK-RSNHPPLSLYGQLLWR 295 Query: 289 EFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGW 348 EF+ P+ +I W+K+ L W +G TGFP IDA M QL GW Sbjct: 296 EFFYTAATNNPNFDKMVN-NTICVQIPWDKNPEALAKWAEGQTGFPWIDAIMAQLQQEGW 354 Query: 349 MHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFR 407 +H+ R A FL + DL + W G + F LLD D + N G W W S + +F Sbjct: 355 IHHLARHAVACFLTRGDLWISWEEGMKVFEELLLDADWSVNAGSWMW-LSCSSFFQQFFH 413 Query: 408 IFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLD------KNDLSLNYPLPIV 461 ++ P G+R DP G FIR +LP+L P +YI+ P + + K + +YPLP+V Sbjct: 414 VYCPVNFGRRTDPNGDFIRKYLPKLRGFPAKYIYDPWNSPESVQKAAKCIIGKDYPLPMV 473 Query: 462 DHKKACHHTLNQYYAAKKQ 480 +H + + + +Q Sbjct: 474 NHAETSRINVERMKQVYQQ 492 >gi|159044861|ref|YP_001533655.1| deoxyribodipyrimidine photo-lyase [Dinoroseobacter shibae DFL 12] gi|157912621|gb|ABV94054.1| deoxyribodipyrimidine photo-lyase [Dinoroseobacter shibae DFL 12] Length = 476 Score = 350 bits (897), Expect = 4e-94, Method: Composition-based stats. Identities = 155/491 (31%), Positives = 236/491 (48%), Gaps = 25/491 (5%) Query: 1 MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHF 60 M + T + + W+R DLR++DN+AL AA A VI VF+ P + A Sbjct: 1 MSSQTDRAPVIWWVRRDLRLSDNRALVAAVETG-APVIPVFLCDPIL---DSLGAAPKWR 56 Query: 61 IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120 + +L +G Y + D++E L + + ++++R Y+ ++V RD Sbjct: 57 FGLGAAALDAALRDRGSRLIYRKG----DALETLRALVSETGAETVYWSRAYDPDQVARD 112 Query: 121 KLLEKRLQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPV 179 K ++ LQ + +SF +L+ P ++ + YKVYTPF KA+ + + Sbjct: 113 KAVKSGLQDDGVDARSFTGHLLIEPWTVETGSGGFYKVYTPFWKAVRDRAMPEPQPAPDR 172 Query: 180 PAIRLTGPVTP----SNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRD 235 P + + + + P IGE A L F +V Y RD Sbjct: 173 IPAPDNWPESDRLDYWALGAAMNRGAAIVAPHLAIGEDAARGRLGAFIAHRVGDYDRARD 232 Query: 236 IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLM 295 IP I+GTS+LS L+ G + P CW + + K+GA ++L EL+WREF HL+ Sbjct: 233 IPGIEGTSRLSENLTYGEIGPATCWQAGQRALAE----GKAGAETFLKELVWREFAYHLV 288 Query: 296 AFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRM 355 P + K + + W D+ + W++G TG +DAAMR++ G MHNR RM Sbjct: 289 WHTPHLIE-KNWRAEWDHFPWRDDNADAETWRRGRTGIRFVDAAMREMYVTGTMHNRGRM 347 Query: 356 ITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQG 415 I AS+L K L+ WR+G+ +F L+D D ASN GWQWAA +G D+ PYFR+FNP Q Sbjct: 348 IVASYLTKHLMTHWRVGQAWFDDCLVDWDPASNAMGWQWAAGSGPDAAPYFRVFNPDTQL 407 Query: 416 KRFDPQGTFIRHWLPELNNVPTQYIHA-----PHSWLDKNDLSLNYPLPIVDHKKACHHT 470 +FD ++ R ++ E P + A P SW D + YP PIV + Sbjct: 408 DKFDRDQSYQRRFIAEGQGTPPEDARAYFDAIPRSWGLSPDDA--YPDPIVPLDEGRKRA 465 Query: 471 LNQYYAAKKQS 481 L+ Y A K + Sbjct: 466 LDAYQARKDAA 476 >gi|284041014|ref|YP_003390944.1| cryptochrome, DASH family [Spirosoma linguale DSM 74] gi|283820307|gb|ADB42145.1| cryptochrome, DASH family [Spirosoma linguale DSM 74] Length = 487 Score = 350 bits (897), Expect = 4e-94, Method: Composition-based stats. Identities = 139/488 (28%), Positives = 224/488 (45%), Gaps = 40/488 (8%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHG------ISARQSHF 60 M+ L W RNDLR+ DN+ A N+D +V+ VF+ P + +H +SA +++F Sbjct: 1 MNRILYWFRNDLRLHDNEGFVRALENAD-QVLPVFVFDPRWFARHSQLEFRRMSAFRANF 59 Query: 61 IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120 + S+ +++SL +G + L + T ++ +++ E ++ Sbjct: 60 LLESVADLRQSLRSRGADLIVR----VGKPADVLAELAGEIGATAVYASKEVTHEETTQE 115 Query: 121 KLLEKRLQH-RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPV 179 L +L+ + + F S L + Q+ V++ FR+ L + + +LP Sbjct: 116 TKLSTKLKPLNIDIELFWMSTLYHVRDLPFTISQLPDVFSKFRQQLEKKAIIRPAFTLPT 175 Query: 180 PAIRLTGPVTPSNIPRFFDYPFQAIDPM------------FPIGEQNALHILRKFCKEKV 227 I L + P IP F D F GE AL L ++ + Sbjct: 176 R-IELVPNIDPGAIPTLSTLGFNDTDIRLILQPDARGAVPFSGGETVALARLDRYLWQTD 234 Query: 228 --YYYVEQRD-IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNE 284 Y E R+ + +S+ S +L+ G LSPR+ + + + + + + E Sbjct: 235 LIATYKETRNGLLGEDYSSKFSAWLATGCLSPRKIYEEVTRYETERV--RNESTYWLIFE 292 Query: 285 LIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLN 344 L+WR+F+R + + + + I + +D L Q W +G+TG P IDA MR++N Sbjct: 293 LLWRDFFRFVALKFGTRIFKRSGIKHDLHKTYGRDEDLFQKWAEGHTGIPFIDANMREMN 352 Query: 345 TIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVP 404 G+M NR R ASFLV DL +DW G YF S+L+D D SN G W + A GND Sbjct: 353 ATGFMSNRGRQNVASFLVSDLGLDWTWGAAYFESKLIDYDPCSNWGNWNYVAGVGNDPRQ 412 Query: 405 Y----FRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND------LSL 454 + R FN Q R+D QG +++HWLPEL VP + +H S + L Sbjct: 413 FSNGQPRYFNILSQALRYDEQGDYVKHWLPELAKVPNEQVHLAWSLSSEQQETYGVVLGQ 472 Query: 455 NYPLPIVD 462 +YPLP+VD Sbjct: 473 DYPLPVVD 480 >gi|182439675|ref|YP_001827394.1| deoxyribodipyrimidine photo-lyase [Streptomyces griseus subsp. griseus NBRC 13350] gi|178468191|dbj|BAG22711.1| deoxyribodipyrimidine photo-lyase [Streptomyces griseus subsp. griseus NBRC 13350] Length = 455 Score = 349 bits (896), Expect = 5e-94, Method: Composition-based stats. Identities = 137/473 (28%), Positives = 222/473 (46%), Gaps = 28/473 (5%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 MSV +V +DLR+ DN L AA ++D +V+ +F+ R + + F+ L Sbjct: 1 MSVAVVLFTSDLRLHDNPVLRAALRDAD-EVVPLFVRDDAVHRAGFDAPNRLAFLADCLA 59 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 + L +G + ++ + + ++ RR++ + + Sbjct: 60 ALDAGLRHRGGRLIVRRG----EAATEVRRVAEETGAARVHIAAGVSRYAARREQRIREA 115 Query: 127 LQHRVICKSFDDSVL--LPPGSI-LNHALQMYKVYTPFRKALIQNLVQ---ADLRSLPVP 180 L D+V+ L PG + + V+TP+ + V+ R++ VP Sbjct: 116 LADTGRELHVHDAVVTALAPGRVVPTGGKDHFAVFTPYFRRWEAEGVRGTLTAPRTVRVP 175 Query: 181 AIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ 240 + P+ + + GE+ ++ + + Y + D A Sbjct: 176 DGVASDPLPDRDSVENLSPG------LARGGEEAGRKLVTSWLNGPMADYEDGHDDLAGD 229 Query: 241 GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPS 300 TS+LSP+L G +S + +R +E K G +++ +L WR+F+ ++A P Sbjct: 230 ATSRLSPHLHFGTVSAAELVHRARE-------KGGLGGEAFVRQLAWRDFHHQVLADRPD 282 Query: 301 VCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASF 360 + P ++ W D+ + AWK G TG+P++DAAMRQL GWMHNR RM+ ASF Sbjct: 283 ASWS-DYRPRHDR--WRSDADEIDAWKSGLTGYPLVDAAMRQLAHEGWMHNRARMLAASF 339 Query: 361 LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDP 420 L K L VDWR+G +F+ L+DGD+A+N WQW A TG D+ P R+ NP IQGKRFD Sbjct: 340 LTKTLYVDWRVGARHFLDLLVDGDVANNQLNWQWVAGTGTDTRP-NRVLNPVIQGKRFDA 398 Query: 421 QGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQ 473 +G ++R W+PEL V IH P + +L+YP P+VD +A Sbjct: 399 RGDYVRRWVPELAEVEGSAIHEPWKLQGLDRAALDYPDPVVDLAEARARFERA 451 >gi|223647560|gb|ACN10538.1| Cryptochrome-1 [Salmo salar] Length = 643 Score = 349 bits (896), Expect = 5e-94, Method: Composition-based stats. Identities = 122/501 (24%), Positives = 198/501 (39%), Gaps = 42/501 (8%) Query: 10 HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69 + W R LR+ DN AL A +SD V V+ P + + F+ L + Sbjct: 5 SIHWFRKGLRLHDNPALLEAVRDSDT-VRCVYFLDPWFAGSSNLGVNRWRFLLQCLEDLD 63 Query: 70 KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL-Q 128 SL + + +++L + E RD ++K + Sbjct: 64 SSLRKLNSRLFVIRG----QPANIFPRLFKDWNISQLTFECDSEPFGKERDAAIKKLATE 119 Query: 129 HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQ-ADLRSLPVPAI----- 182 V S L L+ +++ + P Q LV PV A+ Sbjct: 120 AGVEVVSRISHTLYD----LDKIIELNGGHPPLTFKHFQTLVDSMPPPDAPVEALSRASM 175 Query: 183 -RLTGPVTPSNIPR-----FFDYPFQA---IDPMFPIGEQNALHILRKFC-----KEKVY 228 R PV+ ++ + + F ++P GE AL + + Sbjct: 176 GRCVTPVSDNHRDKYGVPLLEELGFDTEGLAPAVWPGGESEALTRIERQLGPDLSTAWQV 235 Query: 229 YYVEQRD--IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELI 286 + R P + LSPYL G LS R +++L E + + S ++L+ Sbjct: 236 NFESTRKTASPLLPSPLGLSPYLRFGCLSCRLFYSKLAELYKKVKTNGSPPI-SLYDKLL 294 Query: 287 WREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTI 346 WREF+ P P +I W++++ L W + TGFP IDA M QL Sbjct: 295 WREFFYTAATNNPRFDKMDG-NPICIRIPWDRNAEALAKWAEAKTGFPWIDAIMTQLRQE 353 Query: 347 GWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPY 405 GW+H+ R A FL + DL + W G + F LLD D + N G W S + + Sbjct: 354 GWIHHLARHAVACFLTRGDLWISWEEGMKVFEELLLDADWSVNAGSWL-CHSCSSFFQQF 412 Query: 406 FRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSW------LDKNDLSLNYPLP 459 F + P G++ DP+G FIR +LP L ++P +YI+ P + K + ++YP P Sbjct: 413 FHCYCPVGFGRKIDPKGDFIRRYLPVLKDMPDKYIYDPWNAPIEVQRAAKCVVGVDYPKP 472 Query: 460 IVDHKKACHHTLNQYYAAKKQ 480 +V+H +A + + +Q Sbjct: 473 MVNHAEASRLNIERMRQMYQQ 493 >gi|157115313|ref|XP_001658195.1| DNA photolyase [Aedes aegypti] gi|108883518|gb|EAT47743.1| DNA photolyase [Aedes aegypti] Length = 553 Score = 349 bits (896), Expect = 5e-94, Method: Composition-based stats. Identities = 125/506 (24%), Positives = 201/506 (39%), Gaps = 37/506 (7%) Query: 5 TAMSVHLVWLRNDLRITDNKALYAACHNS-----DAKVIAVFIATPEQWRQHGISARQSH 59 ++ + W R LR+ DN AL AA + VFI P + + + Sbjct: 2 SSQQTVVHWFRKGLRLHDNPALLAAIRRCRDSPQQYALRPVFILDPAIVQWLRVGPNRWR 61 Query: 60 FIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRR 119 F+ +L + ++L + + + ++ + V+ L + E ++R Sbjct: 62 FLQQTLADLDRNLRKINSRLYVVRG----NPVDVFPKLFQEWNVSFLTFEHDIEPYSIKR 117 Query: 120 DKLLEKRLQ-HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLP 178 D +E++ + H V + + P +IL + +L L + + P Sbjct: 118 DATVEEQAKKHGVKIQIEKSLTIYDPDAILKMNAGRPPLTYQKYGSLASTLKIPEPVATP 177 Query: 179 VPAIRLTGPVTPSNIPR---------FFDYPFQAIDP---MFPIGEQNALHILRKFCKEK 226 P SN + + + D FP GE AL L K K Sbjct: 178 KEIPSDCVPKQDSNERKRANCYDPPLLVELGVKEEDLGECKFPGGETEALRRLEDHMKRK 237 Query: 227 VY--YYVEQRDIPA--IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWL 282 + + + P T+ LSPY+ G LS R L+ K S + Sbjct: 238 SWVCSFEKPNTSPNSLEPSTTVLSPYVKFGCLSARLFMRELQTVIKGQ--KHSQPPVSLI 295 Query: 283 NELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQ 342 +L+WREFY A P+ + W+ + L+AW G TG+P IDA MRQ Sbjct: 296 GQLMWREFYYCAAADEPNFDKM-VGNSICLHVPWDSNKEFLEAWTHGRTGYPFIDAIMRQ 354 Query: 343 LNTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGND 401 L GW+H+ R A FL + DL + W G+ F LLD D A N G W W S Sbjct: 355 LRQEGWIHHLARHAVACFLTRGDLWISWEEGQRVFEEFLLDADWALNAGNWMW-LSASAF 413 Query: 402 SVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWL------DKNDLSLN 455 YFR+++P GK+ DP+G FI+ ++PEL P+ I+ P + + Sbjct: 414 FHQYFRVYSPVAFGKKTDPEGKFIKKYVPELAKYPSGIIYEPWKASVDVQKKLGCIIGKD 473 Query: 456 YPLPIVDHKKACHHTLNQYYAAKKQS 481 YP IV H++ + + A +++ Sbjct: 474 YPNRIVIHEEIHKKNIQKMTEAYRKN 499 >gi|170070074|ref|XP_001869456.1| cryptochrome 2 [Culex quinquefasciatus] gi|167866000|gb|EDS29383.1| cryptochrome 2 [Culex quinquefasciatus] Length = 828 Score = 349 bits (896), Expect = 6e-94, Method: Composition-based stats. Identities = 125/493 (25%), Positives = 191/493 (38%), Gaps = 50/493 (10%) Query: 10 HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69 + W R LR+ DN AL ++ A + VF+ P + + F+ L + Sbjct: 50 TVHWFRKGLRLHDNPALREGLKDA-ASLRCVFVIDPWFAGSSNVGINKWRFLLQCLEDLD 108 Query: 70 KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH 129 ++L Q + + L + T L + E RD + + + Sbjct: 109 RNLRQLNSRLFVIRG----QPADALPKLFKEWGTTCLTFEEDPEPFGKVRDHNISEMCKE 164 Query: 130 -RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG-- 186 + S L I+ + + D P PAI L Sbjct: 165 LNIDVISAVSHTLYKLERIIEKNNGRAPLTY---NQFQAIIASMDAPPQPEPAITLAAIG 221 Query: 187 -PVTPSN--------IPRFFDYPFQAID---PMFPIGEQNALHILRKFCKEKVYYYVEQR 234 VTP +P + F+ P++ GE AL L + + Sbjct: 222 RAVTPQCDDHDDKYGVPTLEELGFETEGLKPPIWVGGETEALARLERHLGTQ-------- 273 Query: 235 DIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHL 294 + LSPYL G LS R + +L + + IK S +L WREF+ Sbjct: 274 --------TGLSPYLRFGCLSTRLFYYQLTDLYKK--IKKAYPPLSLHGQLFWREFFYCA 323 Query: 295 MAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLR 354 P+ P +I W++++ L W G TGFP IDA M QL GW+H+ R Sbjct: 324 ATKNPNFDKM-AGNPICVQIPWDRNAEALAKWASGQTGFPWIDAIMTQLREEGWIHHLAR 382 Query: 355 MITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTI 413 A FL + DL + W G + F LLD D + N G W W S + +F + P Sbjct: 383 HAVACFLTRGDLWISWEEGMKVFEELLLDADWSVNAGMWMW-LSCSSFFQQFFHCYCPVK 441 Query: 414 QGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLD------KNDLSLNYPLPIVDHKKAC 467 G++ DP G +IR +LP L N PT+YIH P + + + + NYPLP+V+H A Sbjct: 442 FGRKADPNGDYIRRYLPVLKNFPTRYIHEPWNAPESVQRAARCIIGKNYPLPMVNHAIAS 501 Query: 468 HHTLNQYYAAKKQ 480 + + +Q Sbjct: 502 RANMERIKQVYQQ 514 >gi|239940078|ref|ZP_04692015.1| deoxyribodipyrimidine photo-lyase [Streptomyces roseosporus NRRL 15998] gi|239986566|ref|ZP_04707230.1| deoxyribodipyrimidine photo-lyase [Streptomyces roseosporus NRRL 11379] Length = 451 Score = 349 bits (895), Expect = 6e-94, Method: Composition-based stats. Identities = 135/465 (29%), Positives = 216/465 (46%), Gaps = 22/465 (4%) Query: 12 VWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQKS 71 V +DLR+ D+ L AA ++D +V+ +F+ R + + F+ L + Sbjct: 2 VLFTSDLRLHDHPVLRAALRDAD-EVVPLFVRDDAVHRAGFDAPNRLAFLADCLADLDTG 60 Query: 72 LSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHRV 131 L +G + + Q + +R++ + + L Sbjct: 61 LRDRGGRLIVRRGGT----AREVKRVVEQTGADSVHIAAGVSGYAAQREERIREALAGTG 116 Query: 132 ICKSFDDSVL--LPPGSI-LNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188 D+V+ L PG + + V+TP+ + V+ L + +R+ V Sbjct: 117 CELRVHDAVVTALAPGRVVPTGGKDHFAVFTPYFRRWEAEGVRGTLAAP--RTVRVPDGV 174 Query: 189 TPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPY 248 + +P D + GE+ ++ + + Y + D A TS+LSP+ Sbjct: 175 SGDALPD-RDAVKGVSPGLARGGEEAGRKLVTSWLHGPMAAYEDGHDDLAGDATSRLSPH 233 Query: 249 LSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFI 308 L G +S + NR +E K G +++ +L WR+F+ ++A P + Sbjct: 234 LHFGTVSAAELANRARE-------KGGPGGEAFVRQLAWRDFHHQVLAARPDASWS-DYR 285 Query: 309 PWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVD 368 P ++ W D ++AWK G TG+P++DAAMRQL GWMHNR RM+TASFL K L VD Sbjct: 286 PRHDR--WRSDEDEIEAWKSGRTGYPLVDAAMRQLAHEGWMHNRGRMLTASFLTKTLYVD 343 Query: 369 WRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHW 428 WR+G +F+ L+DGD+A+N WQW A TG D+ P R+ NP IQGKRFDP G ++R W Sbjct: 344 WRVGARHFLDLLVDGDVANNQLNWQWVAGTGTDTRP-NRVLNPVIQGKRFDPDGAYVRRW 402 Query: 429 LPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQ 473 +PEL V +H P + ++YP P+VD +A Sbjct: 403 VPELAEVEGPAVHEPWKLEGLDRAGVDYPDPVVDLAEARSRFERA 447 >gi|317106754|dbj|BAJ53248.1| JHL25H03.11 [Jatropha curcas] Length = 536 Score = 349 bits (895), Expect = 7e-94, Method: Composition-based stats. Identities = 139/513 (27%), Positives = 223/513 (43%), Gaps = 44/513 (8%) Query: 1 MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHG-------- 52 M + ++ L+W R LRI DN AL A S+ V VF+ P + Sbjct: 1 MPSGSS---TLMWFRKGLRIHDNPALEYASKGSN-FVYPVFVIDPHYMKPDPNAFSPGST 56 Query: 53 -ISARQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQ 111 + F+ SL + SL + G + I L + V ++ + Sbjct: 57 RAGLNRIKFLLESLADLDLSLKKLGSKLLVLKGEPSQVLISCL----KEWDVKRVCFEYD 112 Query: 112 YEINEVRRDKLLEKRLQH-RVICKSFDDSVLLPPGSIL-NHALQMYKVYTPFRKALIQNL 169 + D ++ + S L P I+ + + Y F K + Sbjct: 113 TDPYYQALDVKVKDFASSVGIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLKVAGEPS 172 Query: 170 VQADLRSLPVPAIRLTGPV---TPSNIPRFFDYPFQAIDPM----FPIGEQNALHILRKF 222 + S+ + ++ G V S +P + + ++ F GE AL LR+ Sbjct: 173 WASSPLSISISSLPPVGDVGSCEISEVPTVEELGYGDVEQDEWTPFRGGESEALKSLRES 232 Query: 223 CKEKVY--YYVEQRDIPAI---QGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSG 277 K+K + + + + P+ T+ LSPYL G LS R + L++ + ++ K S Sbjct: 233 IKDKEWIANFEKPKGDPSAFVKPATTVLSPYLKFGCLSSRYFFQCLQDVYRNVK-KHTSP 291 Query: 278 AFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIID 337 S + +L+WR+F+ + P+ K ++I WN+D+ LL AW+ TG+P ID Sbjct: 292 PVSLVGQLLWRDFFYTVAFGTPNFDQMKDNR-ICKQIPWNEDTELLAAWRDARTGYPWID 350 Query: 338 AAMRQLNTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAA 396 A M QL GWMH+ R A FL + DL V W G + F L+D D A NNG W W Sbjct: 351 AIMVQLRKWGWMHHLARHCVACFLTRGDLFVHWEKGRDVFERLLIDSDWAINNGNWLW-L 409 Query: 397 STGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWL------DKN 450 S + Y RI++P GK++DP G +IRH+LP L ++P ++I+ P + K Sbjct: 410 SCSSFFYQYNRIYSPISFGKKYDPNGNYIRHFLPVLKDMPKEFIYEPWTAPLSVQTKAKC 469 Query: 451 DLSLNYPLPIVDHKKA---CHHTLNQYYAAKKQ 480 + +YP P+V H A C L + YA ++ Sbjct: 470 IIGRDYPKPVVSHDSASKECKRKLAEAYALNQK 502 >gi|158293404|ref|XP_314748.3| AGAP008651-PA [Anopheles gambiae str. PEST] gi|157016689|gb|EAA10141.3| AGAP008651-PA [Anopheles gambiae str. PEST] Length = 556 Score = 349 bits (895), Expect = 7e-94, Method: Composition-based stats. Identities = 126/503 (25%), Positives = 199/503 (39%), Gaps = 38/503 (7%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDA-----KVIAVFIATPEQWRQHGISARQSHFIYA 63 + W R LRI DN AL A A + +F+ P + + + F+ Sbjct: 6 TIVHWFRKGLRIHDNPALTVAVDKVRANPAKYCLRPIFVLDPGIRKWLRVGPNRWRFLQQ 65 Query: 64 SLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLL 123 +L + ++L + + +E V+ L Y E V+RD + Sbjct: 66 TLANLDENLRSINSRLYVVRG----NPVEVFPKLFADWNVSLLTYEHDIEPYAVKRDSTV 121 Query: 124 EKRL-QHRVICKSFDDSVLLPPGSILNHAL-QMYKVYTPFRKALIQNLVQADLRSLPVPA 181 E++ +H V + P I+ + Y + + L Sbjct: 122 EEQARKHWVEVHIEKSHTIFDPEGIVKKNGGKPPLTYQRYATLASACKIPQPLPVPQKLP 181 Query: 182 IRLTGPVTPSNI-----------PRFFDYPFQAIDPM-FPIGEQNALHILRKFCKEKVY- 228 + T P D ++ FP GE AL + + K + Sbjct: 182 AKETSPEADKEERKNPSCYDPPTMEELDIEEASMGQCKFPGGESEALRRMNEILSRKAWV 241 Query: 229 -YYVEQRDIPA--IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNEL 285 + + P T+ LSPYL G LS R ++R+ E K S + ++ Sbjct: 242 CKFEKPNTSPNSLEPSTTVLSPYLKFGCLSVRLFYSRIAETIKGQ--KHSQPPVSLIGQV 299 Query: 286 IWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNT 345 +WREFY + A P+ +I+W+ + L+AW G TG+P IDA MRQL Sbjct: 300 MWREFYYCVAAATPNYDKM-VGNGICTQIDWDTNKDYLEAWTHGRTGYPFIDAIMRQLRQ 358 Query: 346 IGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVP 404 GW+H+ R A FL + DL + W G+ F LLD D A N G W W S Sbjct: 359 EGWIHHLARHAVACFLTRGDLWISWEEGQRVFEELLLDADWALNAGNWMW-LSASAFFHQ 417 Query: 405 YFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDK------NDLSLNYPL 458 YFR+++P GK+ DP+G FI+ ++PEL P I+ P + + +YP+ Sbjct: 418 YFRVYSPVAFGKKTDPEGKFIKKYVPELARFPAGIIYEPWKANLETQKKLGCIIGKDYPM 477 Query: 459 PIVDHKKACHHTLNQYYAAKKQS 481 IV H+ + + AA K++ Sbjct: 478 RIVVHEDISKVNIQRMSAAYKRN 500 >gi|302828718|ref|XP_002945926.1| DNA photolyase [Volvox carteri f. nagariensis] gi|300268741|gb|EFJ52921.1| DNA photolyase [Volvox carteri f. nagariensis] Length = 621 Score = 349 bits (895), Expect = 7e-94, Method: Composition-based stats. Identities = 132/487 (27%), Positives = 207/487 (42%), Gaps = 23/487 (4%) Query: 10 HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGI--SARQSHFIYASLLQ 67 ++W R LR+ DN AL AC + A V VFI P +Q + +F+ SL Sbjct: 7 SILWFRKGLRLHDNPALLEACRGA-AHVYPVFILDPFFLQQSSYKVGVNRYNFLLESLRD 65 Query: 68 VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127 + S +G + E + R+T+L + E RD ++ Sbjct: 66 LDASFRSRGSRLLVLRGKPE----EVFPRVFREWRITQLCFEVDTEPYARVRDARIQGLA 121 Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187 + S L G + + + R P + Sbjct: 122 DEAGVAVWTAVSHTLYVGLFCSCTAGRHGPVLGGCWLWKEKAPAPGGRRGPACENAPSTD 181 Query: 188 VTPSNIPRFFDYPF-QAIDPMFPIGEQNALHILRKFCKEKVY--YYVEQRDIPA---IQG 241 + +P + + F +A +F GE AL L + + + + PA Sbjct: 182 AATTAVPTWQEVGFTEAPTTIFKGGETEALKRLSASLADSKWVADFKKPDTDPAAFERPA 241 Query: 242 TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSV 301 T+ LSPY+ G LSPR RL E + + S +L+WREF+ + A P+ Sbjct: 242 TTVLSPYVKFGCLSPRLFHARLLEVYRRHRGHSQP-PVSLRGQLLWREFFYTVGAHTPNF 300 Query: 302 CMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFL 361 P ++I+W+ D LL AW++ TGFP IDA M QL GWMH+ R A FL Sbjct: 301 -HRMDGNPLCKQIDWDDDEELLAAWREARTGFPWIDAIMTQLRQWGWMHHLARHSVACFL 359 Query: 362 VK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDP 420 + DL V W G + F L+D D N W W +++ S YFR+++P GK++DP Sbjct: 360 TRGDLYVSWERGMQVFEELLIDQDHYLNAANWMWLSASAFFSQ-YFRVYSPISFGKKYDP 418 Query: 421 QGTFIRHWLPELNNVPTQYIHAPHSWLDKND------LSLNYPLPIVDHKKACHHTLNQY 474 +G FIR +LP L ++P++YI+ P + + + +YP P+VDH + + Sbjct: 419 EGKFIRKFLPVLKDMPSKYIYEPWTAPSEVQRRAGCVIGRDYPHPVVDHALVSKQNIARM 478 Query: 475 YAAKKQS 481 AA + + Sbjct: 479 AAAYRSN 485 >gi|307207594|gb|EFN85258.1| Cryptochrome-1 [Harpegnathos saltator] Length = 558 Score = 349 bits (895), Expect = 7e-94, Method: Composition-based stats. Identities = 121/494 (24%), Positives = 189/494 (38%), Gaps = 32/494 (6%) Query: 10 HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69 + W R LR+ DN +L + VF+ P + + F+ L + Sbjct: 56 TVHWFRKGLRLHDNPSLREGLAGASTF-RCVFVLDPWFAGSTNVGINKWRFLLQCLEDLD 114 Query: 70 KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH 129 SL + + + L + T L + E RD + + Sbjct: 115 CSLRKLNSRLFVIRG----QPADALPKLFKEWGTTNLTFEEDPEPFGRVRDHNISALCKE 170 Query: 130 RVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188 I L I+ + + ++ ++ + L V + + Sbjct: 171 LGISVVQRVSHTLYKLDEIIEKNGGKPPLTYHQFQNVVASMEPPEPPVLTVTSACIGSAY 230 Query: 189 TPSN--------IPRFFDYPFQA---IDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIP 237 TP +P + F + P++ GE AL L + + K + R Sbjct: 231 TPLKDDHDDHYGVPTLEELGFDTEGLLPPVWVGGESEALARLERHLERKAWVASFGRPKM 290 Query: 238 AIQGT----SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRH 293 Q + LSPYL G LS R + +L + + IK S +L+WREF+ Sbjct: 291 TPQSLLPSQTGLSPYLRFGCLSTRLFYYQLTDLYKK--IKKAMPPLSLHGQLLWREFFYC 348 Query: 294 LMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRL 353 P+ + P +I W+K+ L W G TGFP IDA M QL GW+H+ Sbjct: 349 AATKNPNFDRMQG-NPICVQIPWDKNVEALAKWANGQTGFPWIDAIMTQLREEGWIHHLA 407 Query: 354 RMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPT 412 R A FL + DL + W G + F LLD D + N G W W S + +F + P Sbjct: 408 RHAVACFLTRGDLWISWEEGMKVFDELLLDADWSVNAGMWMW-LSCSSFFQQFFHCYCPV 466 Query: 413 IQGKRFDPQGTFIRHWLPELNNVPTQYIHAPH------SWLDKNDLSLNYPLPIVDHKKA 466 G++ DP G +IR +LP L N PT+YIH P K + Y LP+V+H K+ Sbjct: 467 RFGRKADPNGDYIRRYLPVLKNFPTRYIHEPWNAPLSIQHAAKCIVGKEYSLPMVNHSKS 526 Query: 467 CHHTLNQYYAAKKQ 480 + + +Q Sbjct: 527 SRINIERMKQVYQQ 540 >gi|302530487|ref|ZP_07282829.1| deoxyribodipyrimidine photo-lyase [Streptomyces sp. AA4] gi|302439382|gb|EFL11198.1| deoxyribodipyrimidine photo-lyase [Streptomyces sp. AA4] Length = 445 Score = 349 bits (895), Expect = 8e-94, Method: Composition-based stats. Identities = 146/470 (31%), Positives = 229/470 (48%), Gaps = 33/470 (7%) Query: 12 VWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQKS 71 +W R DLR+ D+ AL+ A +S ++A+++ + + F+ SL ++ K+ Sbjct: 2 LWFRRDLRLRDHAALFEAAKHSK-HLLALYVLDDRLLE--PAGSPRIAFLLNSLRELDKA 58 Query: 72 LSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL-QHR 130 LS + +V D + + + + R + + RD + + L +HR Sbjct: 59 LSGRLMV-------RCGDPVREVVAAAREIRAAAVHVSADTAPYGRERDDAVAEALAEHR 111 Query: 131 VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTP 190 + + PG + Y+V+TPF +A Q+ + V + P + Sbjct: 112 IQWVPTGSPYAVTPGRVTKPDGTPYRVFTPFYRAWAQHGWPRPADTN-VSIVDWVKPASS 170 Query: 191 SNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLS 250 +P + + P GE+ AL ++F + + Y +RD P GT++LSPYL Sbjct: 171 EPLPEPP----EVECELPPAGEEAALAGWQEFLADGLAEYATERDRPDHAGTTRLSPYLR 226 Query: 251 IGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPW 310 G + PR DL GA + +EL WREF+ ++ P + + Sbjct: 227 WGAIHPRTML-------ADLAGNRSEGAQALRSELCWREFHADVLWHRPETAR-RNYDQR 278 Query: 311 TEKIEWNK---DSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLV 367 + + ++ + W++G TG+PI+DA MRQL GWMHNR+RMI ASFLVKDL + Sbjct: 279 FDGMRYDTGKTAREMFALWREGRTGYPIVDAGMRQLLAEGWMHNRVRMIVASFLVKDLHL 338 Query: 368 DWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRH 427 W G +FM L+DGDLASN WQW A +G D+ PYFRIFNPT QG++FDP+G ++R Sbjct: 339 PWWWGARHFMKHLVDGDLASNQLNWQWVAGSGTDAAPYFRIFNPTTQGQKFDPKGDYVRR 398 Query: 428 WLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477 ++PEL V + +H + YP PIVDH + L +Y A Sbjct: 399 YVPELRGVAGKAVH------VLKERPEGYPQPIVDHAEERQVALQRYGAI 442 >gi|312889794|ref|ZP_07749340.1| deoxyribodipyrimidine photo-lyase (single-stranded DNA-specific) [Mucilaginibacter paludis DSM 18603] gi|311297720|gb|EFQ74843.1| deoxyribodipyrimidine photo-lyase (single-stranded DNA-specific) [Mucilaginibacter paludis DSM 18603] Length = 493 Score = 348 bits (894), Expect = 8e-94, Method: Composition-based stats. Identities = 131/480 (27%), Positives = 210/480 (43%), Gaps = 30/480 (6%) Query: 6 AMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQW-----RQHGISARQSHF 60 + LVW RNDLRI DN+ L A +D KV+ VF + ++ F Sbjct: 10 SEKTILVWFRNDLRIHDNEILVEALRKAD-KVLPVFCFDNFYFKITRYGTRKTGDFRTRF 68 Query: 61 IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120 + ++ ++K+L Q G D ++ + + V++++++R+ E Sbjct: 69 LLEAVADLRKTLQQHGAELIVRSG----DPVDIIPQLAEEYHVSEVYHHREVAFEETDIS 124 Query: 121 KLLEKRL-QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLP- 178 +E L + ++ K F + + V+T FRK + ++ P Sbjct: 125 AKVEAVLWKKKLNLKHFIGHTFYHKEDLPFPIKDIPDVFTTFRKKVERDSSIRPCFETPG 184 Query: 179 ---VPAIRLTGPVTPSNIPRFFDYPFQAIDP--MFPIGEQNALHILRKFCKE--KVYYYV 231 +P I G + P+ FD P F GE AL L ++ E + Y Sbjct: 185 NISIPPIDHPGEI-PTLQQLGFDEPVDDSRAVLHFKGGETEALKRLHEYFWESDCLKTYK 243 Query: 232 EQRD-IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREF 290 R+ + +S+ SP+LS+G LS RQ + +K + + + EL+WR++ Sbjct: 244 TTRNGLLGADYSSKFSPWLSVGCLSVRQVYWEVKRYEQERG--ANDSTYWLIFELLWRDY 301 Query: 291 YRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMH 350 +R + Y + + L + WK G TG P IDA MR+LN G+M Sbjct: 302 FRFMFKKYGNQFFKAGGFKGQAPEVVPHEDELFEKWKAGETGVPFIDANMRELNATGFMS 361 Query: 351 NRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFN 410 NR R ASFLVKDL V+W G YF +L+D ASN G W + A GND R N Sbjct: 362 NRGRQNVASFLVKDLKVNWTKGAAYFEEKLIDYSPASNWGNWAYVAGVGNDPREN-RHLN 420 Query: 411 PTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLD------KNDLSLNYPLPIVDHK 464 Q +DP+G +++ W+PEL +P + + P + K +L +NYP I++ Sbjct: 421 VIKQAIEYDPKGEYVKTWIPELTMIPAKLVQTPFFLTEADLKLYKVELGVNYPKLIINLA 480 >gi|320007131|gb|ADW01981.1| Deoxyribodipyrimidine photo-lyase [Streptomyces flavogriseus ATCC 33331] Length = 459 Score = 348 bits (894), Expect = 8e-94, Method: Composition-based stats. Identities = 135/478 (28%), Positives = 223/478 (46%), Gaps = 26/478 (5%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M+V +V +DLR+ D+ L+AA +SD +V+ +F+ P + + F+ L Sbjct: 1 MTVAIVLFTSDLRLHDHPPLHAALASSD-EVVPLFVLDPGVEAAGFAAPNRRAFLADCLR 59 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 + L +G + + E + + + RR++ L + Sbjct: 60 DLDSGLRDRGGRLVVREG----EVAEEVRRIVSETEAGVVHMAAGISGYAQRREERLREA 115 Query: 127 LQHRVICKSFDDSVL--LPPGSILNHA--LQMYKVYTPFRKALIQNLVQADLRSLPVPAI 182 L S D+V+ + PGS++ + V+TP+ + LRS Sbjct: 116 LSSVGCRLSVHDAVVTAVAPGSVVPSGAGRDHFAVFTPYFRRWS----GEGLRSPFGAPR 171 Query: 183 RLTGPVTPSNIPRFFDYPFQAIDP-MFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQG 241 ++ P P + + + P + GE + + ++ + Y ++ D A Sbjct: 172 KVRVPEGPGSAALPSRAGTRGLSPGLAEGGETEGRRLFTAWRRDGLASYEDRHDDMAGDA 231 Query: 242 TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSV 301 TS+LSP+L G LSP + +R + GA +++ ++ WR+F+ ++A P+V Sbjct: 232 TSRLSPHLHFGTLSPTELVHRARAT-------GGPGAEAFVRQVCWRDFHHQVLATRPAV 284 Query: 302 CMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFL 361 AWK+G TG+P++DAAMRQL GWMHNR R++TASFL Sbjct: 285 SRSDYRPKQDRWRTGRAAEADTAAWKEGRTGYPVVDAAMRQLLHEGWMHNRGRLLTASFL 344 Query: 362 VKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQ 421 K L VDWR G +F+ L+DGD+A+N WQW A TG DS P R+ NP Q KR+DP+ Sbjct: 345 AKTLYVDWRTGARHFLELLVDGDIANNQLNWQWVAGTGTDSRP-NRVLNPVTQAKRYDPE 403 Query: 422 GTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479 G ++R W+PEL +P +H P ++ +YP P+V L ++ A++ Sbjct: 404 GAYVRRWVPELAGIPGSAVHEPWKLPREDRRRYDYPEPVVGLSDG----LARFKEARR 457 >gi|129593762|gb|ABO31112.1| cryptochrome 2 protein [Bombus impatiens] Length = 574 Score = 348 bits (894), Expect = 8e-94, Method: Composition-based stats. Identities = 120/494 (24%), Positives = 188/494 (38%), Gaps = 32/494 (6%) Query: 10 HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69 + W R LR+ DN +L VF+ P + + F+ L + Sbjct: 23 TVHWFRKGLRLHDNPSLREGL-TGATTFRCVFVLDPWFAGSTNVGINKWRFLLQCLEDLD 81 Query: 70 KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH 129 SL + + + L + T L + E RD + + Sbjct: 82 CSLRKLNSRLFVIRG----QPADALPKLFKEWGTTNLTFEEDPEPFGRVRDHNISALCKE 137 Query: 130 RVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188 I L I+ + + ++ ++ + V + + Sbjct: 138 LGISVVQKVSHTLYKLDEIIERNGGKPPLTYHQFQNVVASMDPPEPSVPTVTSACIGSAY 197 Query: 189 TPSN--------IPRFFDYPFQA---IDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIP 237 TP +P + F + P++ GE AL L + + K + R Sbjct: 198 TPLKEDHDDHYGVPTLEELGFDTEGLLPPVWVGGESEALARLERHLERKAWVASFGRPKM 257 Query: 238 AIQGT----SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRH 293 Q + LSPYL G LS R + +L + + IK S +L+WREF+ Sbjct: 258 TPQSLLPSQTGLSPYLRFGCLSTRLFYYQLTDLYKK--IKKAVPPLSLHGQLLWREFFYC 315 Query: 294 LMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRL 353 P+ + P +I W+K+ L W G TGFP IDA M QL GW+H+ Sbjct: 316 AATKNPNFDRMQG-NPICVQIPWDKNVEALAKWANGQTGFPWIDAIMTQLREEGWIHHLA 374 Query: 354 RMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPT 412 R A FL + DL + W G + F LLD D + N G W W S + +F + P Sbjct: 375 RHAVACFLTRGDLWISWEEGMKVFDELLLDADWSVNAGMWMW-LSCSSFFQQFFHCYCPV 433 Query: 413 IQGKRFDPQGTFIRHWLPELNNVPTQYIHAPH------SWLDKNDLSLNYPLPIVDHKKA 466 G++ DP G +IR +LP L N PT+YIH P K + +Y LP+V+H K+ Sbjct: 434 RFGRKADPNGDYIRRYLPILKNFPTRYIHEPWNAPLSVQRAAKCIIGKDYSLPMVNHSKS 493 Query: 467 CHHTLNQYYAAKKQ 480 + + +Q Sbjct: 494 SRINIERMKQVYQQ 507 >gi|18400841|ref|NP_566520.1| UVR3 (UV REPAIR DEFECTIVE 3); DNA (6-4) photolyase [Arabidopsis thaliana] gi|306756349|sp|O48652|UVR3_ARATH RecName: Full=(6-4)DNA photolyase; AltName: Full=Protein UV repair defective 3 gi|332642182|gb|AEE75703.1| (6-4)DNA photolyase [Arabidopsis thaliana] Length = 556 Score = 348 bits (894), Expect = 8e-94, Method: Composition-based stats. Identities = 137/512 (26%), Positives = 214/512 (41%), Gaps = 44/512 (8%) Query: 5 TAMSV---HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHG--------- 52 T+M+ L+W R LR+ DN AL A S+ + VF+ P Sbjct: 18 TSMATGSGSLIWFRKGLRVHDNPALEYASKGSE-FMYPVFVIDPHYMESDPSAFSPGSSR 76 Query: 53 ISARQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQY 112 + F+ SL + SL + G + + + L + +V +L + Sbjct: 77 AGVNRIRFLLESLKDLDSSLKKLGSRLLVFKGEPGEVLVRCL----QEWKVKRLCFEYDT 132 Query: 113 EINEVRRDKLLEKRLQH-RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQ 171 + D ++ V S L P I+ + + Sbjct: 133 DPYYQALDVKVKDYASSTGVEVFSPVSHTLFNPAHIIEKNGGKPPLSYQSFLKVAGEPSC 192 Query: 172 ADLRSLP----VPAIRLTGPVTPSNIPRFFDYPFQAIDPM----FPIGEQNALHILRKFC 223 A + +P I G + S +P + ++ + F GE AL L K Sbjct: 193 AKSELVMSYSSLPPIGDIGNLGISEVPSLEELGYKDDEQADWTPFRGGESEALKRLTKSI 252 Query: 224 KEKVY--YYVEQRDIPAI---QGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGA 278 +K + + + + P+ T+ +SPYL G LS R + L+ + D+ K S Sbjct: 253 SDKAWVANFEKPKGDPSAFLKPATTVMSPYLKFGCLSSRYFYQCLQNIYKDVK-KHTSPP 311 Query: 279 FSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDA 338 S L +L+WREF+ P+ K ++I WN+D +L AW+ G TG+P IDA Sbjct: 312 VSLLGQLLWREFFYTTAFGTPNFDKMKGNR-ICKQIPWNEDHAMLAAWRDGKTGYPWIDA 370 Query: 339 AMRQLNTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAAS 397 M QL GWMH+ R A FL + DL + W G + F L+D D A NNG W W S Sbjct: 371 IMVQLLKWGWMHHLARHCVACFLTRGDLFIHWEQGRDVFERLLIDSDWAINNGNWMW-LS 429 Query: 398 TGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWL------DKND 451 + + RI++P GK++DP G +IRH+LP L ++P QYI+ P + Sbjct: 430 CSSFFYQFNRIYSPISFGKKYDPDGKYIRHFLPVLKDMPKQYIYEPWTAPLSVQTKANCI 489 Query: 452 LSLNYPLPIVDHKKA---CHHTLNQYYAAKKQ 480 + +YP P+V H A C + + YA K+ Sbjct: 490 VGKDYPKPMVLHDSASKECKRKMGEAYALNKK 521 >gi|238502227|ref|XP_002382347.1| deoxyribodipyrimidine photo-lyase Phr1, putative [Aspergillus flavus NRRL3357] gi|220691157|gb|EED47505.1| deoxyribodipyrimidine photo-lyase Phr1, putative [Aspergillus flavus NRRL3357] Length = 572 Score = 348 bits (894), Expect = 1e-93, Method: Composition-based stats. Identities = 146/417 (35%), Positives = 219/417 (52%), Gaps = 18/417 (4%) Query: 11 LVWLRNDLRITDNKALYAA---CHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67 + W ++DLR+ DN+AL A +IA++I +PE H S + +L Q Sbjct: 133 VHWFKSDLRLHDNRALRKAYEVAREHSIPLIALYILSPEDLTAHLSSPARVDLTLRTLEQ 192 Query: 68 VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127 ++ L + I + D + + C + LF N +YE++E+RR+ L + Sbjct: 193 LKLDLGELDIPLHMETQESRRDIPQRIIHLCQEWGANHLFANIEYEVDELRREAKLVRLC 252 Query: 128 QHRVICKSF-DDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQAD--------LRSLP 178 I D+ ++PPG + + + Y VY+P+ ++ L+ S P Sbjct: 253 VENGIAFDVLHDTCVVPPGLLSSQQGKQYAVYSPWFRSWQMFLMDNPEHLEVSEEPGSNP 312 Query: 179 VPAIRLTGPVTPS------NIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVE 232 A ++ + S N R D + ++P GE L L F +EK Y + Sbjct: 313 GNARKVFKDLFASEVPGAPNNKRLSDEEREHFRQLYPAGEHEGLDRLESFLEEKATAYDD 372 Query: 233 QRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYR 292 R+ + Q TS LSPY + G LS R + K+ + L + + G SW++E+ WR+FY+ Sbjct: 373 MRNSLSKQTTSVLSPYFASGSLSARTAVAKAKKANKNQLDRNELGFVSWISEVAWRDFYK 432 Query: 293 HLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNR 352 H++ +P +CM K F P +EW ++ +AW +G TGFPI+DAAMRQ+ + WMHNR Sbjct: 433 HVLVRWPFICMNKCFKPEFTDLEWEYNTDYFKAWCEGRTGFPIVDAAMRQMKSSAWMHNR 492 Query: 353 LRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIF 409 RMI ASFL KDLL+DWR GE YFM L+DGD ASN+GGW + +STG D PYFRIF Sbjct: 493 SRMIVASFLSKDLLIDWRRGERYFMEHLIDGDFASNHGGWGFGSSTGVDPQPYFRIF 549 >gi|311739236|ref|ZP_07713073.1| deoxyribodipyrimidine photolyase [Corynebacterium pseudogenitalium ATCC 33035] gi|311305662|gb|EFQ81728.1| deoxyribodipyrimidine photolyase [Corynebacterium pseudogenitalium ATCC 33035] Length = 477 Score = 348 bits (894), Expect = 1e-93, Method: Composition-based stats. Identities = 147/487 (30%), Positives = 224/487 (45%), Gaps = 59/487 (12%) Query: 2 KATTAMSVHLVWLRNDLRITDNKALYAACHNS---DAKVIAVFIATPEQWRQHGISARQS 58 + TAM+ L+W R+DLR+ DN+AL A + DA ++AV + P + + Sbjct: 39 RRMTAMTC-LMWFRDDLRLHDNQALSRAATAASLGDAPLVAVVLDEPAYPGTRPLGGATT 97 Query: 59 HFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVR 118 + SL + L+ G+ D+ E + + T + + R+Y Sbjct: 98 WWRERSLYALAHDLADHGVELI----RAAGDAREEIPRLAAELGATTVTWTRRYHGPLRE 153 Query: 119 RDKLLEKRL-QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSL 177 D +++ L S L+ P + N Q YKV+TPF KA + + + Sbjct: 154 VDATVKETLTSQGTTATSLPGFTLVEPWEVTNGQGQPYKVFTPFSKAAASQVAGDEPEGV 213 Query: 178 PVP------AIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYV 231 P A P P+ ++ + GE A L + + Y Sbjct: 214 PEMGASASSASAWPKPTEPAWAASLAEH--------WTPGEAGARERLAQL---DLANYA 262 Query: 232 EQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFY 291 E+RDIPA+ TS LSP+L G +SPR+ W + A + +EL+WR+F Sbjct: 263 EERDIPALNATSLLSPHLRFGEVSPREVWF---------AAAEEPEAAKFHSELLWRDFA 313 Query: 292 RHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHN 351 H + P++ ++ +W+ D L+ W+ G TG P++DA MR+L G+MHN Sbjct: 314 WHRLYHLPNLATEN-VREKFDRFDWSWDDPRLKDWQAGTTGIPLVDAGMRELWATGYMHN 372 Query: 352 RLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNP 411 R+RM+ SFL K+L + WR+GEE+F L+D D ASN WQW A G+D+ P+FRIFNP Sbjct: 373 RVRMVVGSFLTKNLGIHWRLGEEWFWDTLVDADAASNPFNWQWVAGCGDDAAPFFRIFNP 432 Query: 412 TIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTL 471 Q KRFDP G ++R W P L+ AP PIVD +++ L Sbjct: 433 ETQAKRFDPDGEYVRRWAPALS--------AP---------------PIVDLQESRQAAL 469 Query: 472 NQYYAAK 478 + Y K Sbjct: 470 DAYAEIK 476 >gi|254438207|ref|ZP_05051701.1| deoxyribodipyrimidine photolyase family [Octadecabacter antarcticus 307] gi|198253653|gb|EDY77967.1| deoxyribodipyrimidine photolyase family [Octadecabacter antarcticus 307] Length = 533 Score = 348 bits (893), Expect = 1e-93, Method: Composition-based stats. Identities = 147/483 (30%), Positives = 217/483 (44%), Gaps = 34/483 (7%) Query: 8 SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67 + W+R D RI DN AL AAC VI VFI E HG + + + + Sbjct: 66 KPVIYWVRRDFRIGDNAALSAACATG-RPVIPVFICD-EVVESHGAAPKFR--LGEGVRV 121 Query: 68 VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127 +L+ G + D++ L Q T +++NR Y+ RD ++ L Sbjct: 122 FGAALAVVGSRLVLRRG----DALAVLREVVAQTGATGVYWNRLYDPASKARDTGVKAAL 177 Query: 128 Q-HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 + V SF +L P ++ Y+V+TP K + V + + + Sbjct: 178 KADGVEVASFTGHLLFEPWTVETKTGGFYRVFTPLWKTVRGRDVATPIPA----PASVPA 233 Query: 187 PVTPSNIPRFFDY--------PFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPA 238 P R D+ + +GE A L F + +V Y RD+P Sbjct: 234 PDVWPTSDRLDDWALGAAMVRGRDVLAAHICVGEAAARTRLETFIEGRVQSYQTNRDLPG 293 Query: 239 IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFY 298 + GTS+LS L+ G +SP CW+ + K A + EL+WREF HL+ Sbjct: 294 VDGTSRLSENLTYGEISPAVCWHAGWA----AIHSGKGQAEIFCKELVWREFAYHLVHHT 349 Query: 299 PSVCMGKPFIPWTEKIEWN-KDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMIT 357 P + + + + + WN +D+ + AWKQG TG +DAAMR++ G MHNR RMI Sbjct: 350 PHI-VDRNWKEGWDSFPWNTEDTAEVIAWKQGRTGIAFVDAAMREMYVSGTMHNRGRMIV 408 Query: 358 ASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKR 417 AS+L K L+ W++G+ +F L D D ASN GWQWAA +G D+ PYFR+FNP Q + Sbjct: 409 ASYLTKHLMTHWKVGQAWFDDCLTDWDPASNAMGWQWAAGSGPDAAPYFRVFNPVTQLDK 468 Query: 418 FDPQGTFIRHWLPELN-NVPTQYIH----APHSWLDKNDLSLNYPLPIVDHKKACHHTLN 472 FD G + R W+ E + P + P +W + YP P+VD L Sbjct: 469 FDRAGLYARTWIAEGQGDAPDTALSYFDAIPKNWGLAA--TDQYPAPVVDMATGRQRALE 526 Query: 473 QYY 475 Y Sbjct: 527 AYK 529 >gi|223647614|gb|ACN10565.1| Cryptochrome-1 [Salmo salar] Length = 523 Score = 348 bits (893), Expect = 1e-93, Method: Composition-based stats. Identities = 131/496 (26%), Positives = 207/496 (41%), Gaps = 38/496 (7%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 + W R LR+ DN AL AA + ++ VF+ P I + F+ +L + Sbjct: 6 IHWFRKGLRLHDNPALVAALRDCK-EIYPVFVLDPYSPNNVNIGINRWKFLIGALKDLDC 64 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130 SL + + E + +VT+L Y E +RRDK + + + Sbjct: 65 SLRKLNSRLFVVRGKTD----EVFPKLFQKWKVTRLTYEYDTEPFSLRRDKEVGRLAEEH 120 Query: 131 VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQ---ADLRSLPVPAIRLTGP 187 + + S L ++ ++ P +Q LV R +P P Sbjct: 121 GVEIIYKVSHTLYN---IDRIIEENNGKAPLTYNRLQTLVSSIGPPKRPIPAPTCDDMKD 177 Query: 188 VTP------------SNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVY--YYVEQ 233 V S + + + P + +FP GEQ AL L + K + + + Sbjct: 178 VKTPCSEKHEENYGISTLEKLYQDPESLTEELFPGGEQEALRRLDQHMARKEWVCGFEKP 237 Query: 234 RDIPAI--QGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFY 291 + P T+ LSPY++ G LS R W L + + K S +L+WREF+ Sbjct: 238 QTSPNSLSPSTTVLSPYMTFGCLSARTFWWSLTDVYQGK--KHSQPPVSLHGQLLWREFF 295 Query: 292 RHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHN 351 P+ + P +++W+ + L AW + TGFP IDA M QL GW+H+ Sbjct: 296 YTAGLGIPNFDKMEG-NPVCTQVDWDSNFEYLAAWAEARTGFPFIDAIMTQLRQEGWIHH 354 Query: 352 RLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFN 410 R A FL + DL + W G++ F LLDGD + N G WQW S +FR+++ Sbjct: 355 LARHAVACFLTRGDLWISWEEGQKVFEELLLDGDWSLNAGNWQW-LSASTFFHQFFRVYS 413 Query: 411 PTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDK------NDLSLNYPLPIVDHK 464 P GK+ D G +I+ +LP L P QYI+ P + +YP PIV+H+ Sbjct: 414 PIAFGKKTDKNGDYIKKYLPHLKKYPAQYIYEPWKAPRSVQEAAGCIVGKDYPRPIVEHE 473 Query: 465 KACHHTLNQYYAAKKQ 480 + + AA + Sbjct: 474 VISKKNIQRMKAAYAK 489 >gi|134032019|ref|NP_001076794.1| cryptochrome 2 [Tribolium castaneum] gi|133754349|gb|ABO38438.1| cryptochrome 2 [Tribolium castaneum] gi|270008089|gb|EFA04537.1| cryptochrome 2 [Tribolium castaneum] Length = 535 Score = 348 bits (893), Expect = 1e-93, Method: Composition-based stats. Identities = 127/493 (25%), Positives = 192/493 (38%), Gaps = 32/493 (6%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 + W R LR+ DN +L + VF+ P + + F+ L + + Sbjct: 20 VHWFRRGLRLHDNPSLREGLKGARTF-RCVFVLDPWFAGSSNVGINKWRFLLQCLEDLDR 78 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130 SL + + + L + T L + E RD L Q Sbjct: 79 SLRKLNSRLFVIRG----QPADALPKLFKEWGTTALTFEEDPEPFGGVRDHNLTTLCQEL 134 Query: 131 VI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189 I L I++ + A+I + PV L G T Sbjct: 135 GISVVQKVSHTLYHLQDIIDRNGGRAPLTYHQFLAIIACMGPPPQPEPPVTFNSLNGAHT 194 Query: 190 PS--------NIPRFFDYPFQ---AIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPA 238 P +P + F + P++ GE AL L + + K + R Sbjct: 195 PLTDDHDEKYGVPTLEELGFDTEGRLPPVWQGGESEALARLERHLERKAWVASFGRPKMT 254 Query: 239 IQGT----SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHL 294 Q + LSPYL G LS R + +L + + IK S +L+WREF+ Sbjct: 255 PQSLLPSQTGLSPYLRFGCLSTRLFYYQLTDLYKK--IKKAFPPLSLHGQLLWREFFYCA 312 Query: 295 MAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLR 354 P+ P +I W+K++ L W G TGFP IDA M QL GW+H+ R Sbjct: 313 ATKNPNFDKMIG-NPICVQIPWDKNAEALAKWANGQTGFPWIDAIMTQLREEGWIHHLAR 371 Query: 355 MITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTI 413 A FL + DL + W G + F LLD D + N G W W S + +F + P Sbjct: 372 HAVACFLTRGDLWLSWEEGMKVFEELLLDADWSVNAGMWMW-LSCSSFFQQFFHCYCPIK 430 Query: 414 QGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLD------KNDLSLNYPLPIVDHKKAC 467 G++ DP G +IR +LP L N+P+QYIH P + + K + +Y LP+V+H A Sbjct: 431 FGRKADPNGDYIRKYLPVLKNMPSQYIHEPWTAPEQVQRAAKCIIGKDYSLPMVNHAAAS 490 Query: 468 HHTLNQYYAAKKQ 480 + + +Q Sbjct: 491 RVNIQRMKQVYQQ 503 >gi|315499875|ref|YP_004088678.1| DNA photolyase fad-binding protein [Asticcacaulis excentricus CB 48] gi|315417887|gb|ADU14527.1| DNA photolyase FAD-binding protein [Asticcacaulis excentricus CB 48] Length = 484 Score = 348 bits (893), Expect = 1e-93, Method: Composition-based stats. Identities = 144/491 (29%), Positives = 218/491 (44%), Gaps = 29/491 (5%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 ++W R+DLR+ D++ A NS + V+ V+I EQ Q + A ++ SL + Sbjct: 4 TTILWFRSDLRLQDHEG-VEATLNSGSPVVPVYIYD-EQLAQRPLGAASKWWLDRSLRSL 61 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128 +SL +G + S ++ L Q T+L +R +E D L K L Sbjct: 62 DQSLRARGARLIVLKGS----ALAQLKRLIGQVSATRLIASRTFEPKIDAFDAQLSKAL- 116 Query: 129 HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQN----------LVQADLRSLP 178 + + F+ +L P I YKV+TPF +AL+ L Sbjct: 117 -GIPVEIFNTHLLSDPTQIRTGDGNPYKVFTPFYRALLARGAARGHARKALATPWPAPAE 175 Query: 179 VPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPA 238 P + + + ++ GE A L F + + Y RD P Sbjct: 176 WPESVDIDALGLKPALTLSGHDWSEGFDVWTPGEDGAHQRLSAFLRSGLKGYAPDRDRPD 235 Query: 239 IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFY 298 + TS+LSP+L G +SP + + + + EL WR+F +++ Sbjct: 236 LDITSRLSPHLRFGEISPHRVLHEAEAHAA-AHPALSDDLEKFRAELAWRDFSYNILQLQ 294 Query: 299 PSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITA 358 P + F + + W D L+AW++G TG+ ++DA MRQL G+MHNR+RM+ A Sbjct: 295 PELDRVN-FKSAFDAMPWRDDPAGLRAWQRGETGYSLVDAGMRQLWRTGFMHNRVRMVCA 353 Query: 359 SFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRF 418 SFL K LL+DWR GE++F L+D D ASN WQW A +G D+ PYFRIFNP Q ++F Sbjct: 354 SFLSKHLLIDWRQGEQWFWDTLVDADPASNTASWQWVAGSGADAAPYFRIFNPLTQAEKF 413 Query: 419 DPQGTFIRHWLPELNNVPTQYIHAPHSWLDK---------NDLSLNYPLPIVDHKKACHH 469 DP+G + R ++ A H ++ S P IVDH A Sbjct: 414 DPKGAYRRRFVSGFTEKIAGAASAHHQKFERDLFDFAGVSASNSKGAPRLIVDHAVARQR 473 Query: 470 TLNQYYAAKKQ 480 L+ Y KK Sbjct: 474 ALDAYAQMKKD 484 >gi|167736303|dbj|BAG07408.1| cryptochrome-m [Riptortus pedestris] Length = 538 Score = 348 bits (892), Expect = 2e-93, Method: Composition-based stats. Identities = 117/492 (23%), Positives = 197/492 (40%), Gaps = 32/492 (6%) Query: 10 HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69 + W R LR+ DN +L N +FI P + + F+ L + Sbjct: 6 TVHWFRKGLRLHDNPSLRHGL-NGAKTFRCIFILDPWFANASNVGINKWRFLLQCLEDLD 64 Query: 70 KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH 129 +SL + + + L + T L + E RD+ + + Sbjct: 65 RSLMKLNSRLFVIRG----QPADILPKLLKEWGTTCLTFEEDPEPFGRVRDQNIMAMCRG 120 Query: 130 -RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188 + S L I+ + ++++ ++ L PV + + V Sbjct: 121 MNITVISLVAHTLYKLECIIERNGGRAPLTYHQFQSVVASMESPPLPVPPVTSTVVGDAV 180 Query: 189 TPSNIPRFFDYPFQAIDPM-----------FPIGEQNALHILRKFCKEKVY--YYVEQRD 235 +P + Y ++ + + GE AL L + + K + + + + Sbjct: 181 SPISDDHDEKYGVPTLEELGFDTEGLLPGVWQGGESEALSRLERHLERKAWVASFGKPKM 240 Query: 236 IPA--IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRH 293 P + + LSPYL G LS R + +L + + IK S +++WREF+ Sbjct: 241 TPQSLLPSQTGLSPYLRFGCLSTRLFYYQLNDLYRK--IKKAVPPLSLHGQVLWREFFYC 298 Query: 294 LMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRL 353 P+ P ++ W+K+ L W G TGFP IDA M QL GW+H+ Sbjct: 299 AATKNPNFDRMIG-NPICVQVPWDKNPEALAKWANGQTGFPWIDAIMTQLREEGWIHHLA 357 Query: 354 RMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPT 412 R A FL + DL + W G + F LLD D + N G W W S + +F + P Sbjct: 358 RHAVACFLTRGDLWISWEEGMKVFEELLLDADWSVNAGMWMW-LSCSSFFQQFFHCYCPV 416 Query: 413 IQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLD------KNDLSLNYPLPIVDHKKA 466 G++ DP G +IR +LP L N+PT+YIH P + + K + ++YPLP+++H Sbjct: 417 RFGRKADPNGDYIRKYLPVLKNMPTKYIHEPWNCPESVQKAAKCTIGVDYPLPMLNHSVV 476 Query: 467 CHHTLNQYYAAK 478 H + + Sbjct: 477 SKHNIERMKQVY 488 >gi|159479960|ref|XP_001698054.1| cryptochrome photoreceptor [Chlamydomonas reinhardtii] gi|158273853|gb|EDO99639.1| cryptochrome photoreceptor [Chlamydomonas reinhardtii] Length = 595 Score = 348 bits (892), Expect = 2e-93, Method: Composition-based stats. Identities = 132/495 (26%), Positives = 213/495 (43%), Gaps = 31/495 (6%) Query: 10 HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGI--SARQSHFIYASLLQ 67 ++W R LR+ DN AL AC ++ V VF+ P +Q S + +F+ SL Sbjct: 7 SIIWFRKGLRLHDNPALLEACKDAK-HVYPVFVLDPHFLQQSSYKVSVNRYNFLLESLED 65 Query: 68 VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK-R 126 +Q+S +G + E + VT+L + E RD + + Sbjct: 66 LQRSFQARGSRLLVLRGKPE----EVFPRVFREWGVTQLCFEHDTEPYAKVRDAAVRRLA 121 Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL-- 184 + V + L ++ + L+ + + PA Sbjct: 122 AEAGVEVVTPISHTLYDTDMLVARNGGAAPLTMQSFTKLVDRVGDPPAPAPDPPAAMPPP 181 Query: 185 -----TGPVTPSNIPRFFDYPFQAID-PMFPIGEQNALHILRKFCKEKVY--YYVEQRDI 236 + + +P + + F+ +F GE AL L ++ + + + Sbjct: 182 AEDMPSAAPAATGVPTWQEVGFKEPPLTVFKGGETEALARLEAAFQDPKWVAGFQKPDTD 241 Query: 237 PAI---QGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRH 293 P+ T+ LSPYL G LS R RL E + S +L+WREF+ Sbjct: 242 PSAWEKPATTVLSPYLKFGCLSARLFHARLLEVYR-RHPAHSQPPVSLRGQLLWREFFYT 300 Query: 294 LMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRL 353 + + P+ P ++I+W+ + L AW++ TGFP IDA M QL T GWMH+ Sbjct: 301 VGSTTPNF-HRMAGNPVCKQIDWDDNPEFLAAWREARTGFPWIDAIMTQLVTWGWMHHLA 359 Query: 354 RMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPT 412 R A FL + DL V W G E F L+D D N W W +++ S YFR+++P Sbjct: 360 RHSVACFLTRGDLYVSWERGMEVFEEHLIDQDHYLNAANWMWLSASAFFSQ-YFRVYSPV 418 Query: 413 IQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND------LSLNYPLPIVDHKKA 466 + GK++DP+G FIR +LP L ++P +YI+ P + + + +YP PIVDH A Sbjct: 419 VFGKKYDPEGRFIRKFLPVLKDMPAKYIYEPWTAPLEVQRKAGCVVGRDYPAPIVDHAVA 478 Query: 467 CHHTLNQYYAAKKQS 481 + + AA ++S Sbjct: 479 SKACIARMAAAYRRS 493 >gi|225010806|ref|ZP_03701274.1| Deoxyribodipyrimidine photo-lyase [Flavobacteria bacterium MS024-3C] gi|225005014|gb|EEG42968.1| Deoxyribodipyrimidine photo-lyase [Flavobacteria bacterium MS024-3C] Length = 438 Score = 347 bits (891), Expect = 2e-93, Method: Composition-based stats. Identities = 150/476 (31%), Positives = 222/476 (46%), Gaps = 51/476 (10%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 + + W R DLR DN L A S KV+ +FI E + FI L ++ Sbjct: 5 IVIFWFRRDLRYNDNTGLSKAL-LSGKKVLPIFIFDTEILDMLPEKDPRLQFIVNQLHEI 63 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQR---VTKLFYNRQYEINEVRRDKLLEK 125 + + + FQ S + + S V ++ N YE V+RD ++ Sbjct: 64 NQHFNTQ---FQSGVQSYHNSPLNVFKSLLEAANDFKVCGVYTNEDYEPYAVQRDLEIKA 120 Query: 126 RLQHR-VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL 184 L + V SF D V+ + + Y VYTP++ + Q P + Sbjct: 121 YLATKSVDFHSFKDQVVFEKDQVTKEDGKPYVVYTPYKNKWLSIFEQQ----YPNGFQEI 176 Query: 185 TGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFC--KEKVYYYVEQRDIPAIQ-G 241 P+ + +A+ G +A + K+ + Y +R+ P+I+ G Sbjct: 177 DMPLENLYKMNTSLHDMKAL------GFSSAEIEVPKYSVTSALIEAYEAKRNFPSIENG 230 Query: 242 TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSV 301 TS+L P+L G +S R + K + + +L+ELIWREF+ ++ +P Sbjct: 231 TSKLGPHLRFGTVSIRALVQKAKGQKNQV----------FLSELIWREFFMQILWHFPHT 280 Query: 302 CMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFL 361 F P ++IEW ++ + WK G TG+P++DA MR+LN G MHNR+RM+ ASFL Sbjct: 281 PT-NAFKPAYDRIEWRNNAAEFEHWKNGTTGYPLVDAGMRELNATGTMHNRVRMLVASFL 339 Query: 362 VKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQ 421 K LL+DWR GE YF +LLD +LASN G WQWAA +G D+ PYFRIFNPT Q +FD Q Sbjct: 340 CKHLLIDWRWGEAYFAEKLLDFELASNVGNWQWAAGSGVDAAPYFRIFNPTTQIDKFDKQ 399 Query: 422 GTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477 +++ W+ +L + YP PIVDHK A L Y A Sbjct: 400 HIYLKKWVSDLGEL-------------------TYPSPIVDHKMARERCLATYKKA 436 >gi|6118527|gb|AAF04135.1|AF191033_3 DNA photolyase [Mycobacterium smegmatis] Length = 431 Score = 347 bits (891), Expect = 2e-93, Method: Composition-based stats. Identities = 157/469 (33%), Positives = 223/469 (47%), Gaps = 44/469 (9%) Query: 12 VWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQKS 71 +WLR DLR+ D AL AA D+ V+ F+ P R R+ F++ SL ++ Sbjct: 1 MWLRRDLRLGDLPALQAARGTDDSSVLLCFVVDPRLARS--SGERRLAFLFDSLRELDDK 58 Query: 72 LSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHRV 131 L + +V + E + + + + RRD+ + + L V Sbjct: 59 LDGRLLVVRGRPD-------EEIPRLARAVDAEAVHISADFTPFGRRRDEAVAEALGE-V 110 Query: 132 ICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPS 191 ++ L+ PG I + YKV+TPF + + + S VP+ + P + Sbjct: 111 PLEATGSPYLVSPGRITKDDGEPYKVFTPFFRRWRDHGWRRPAES-SVPSSAVVDPADIA 169 Query: 192 NIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSI 251 N R P + FP GE A +F + Y E RD PA TS++S YL Sbjct: 170 NSGRIA-VPTAPVKLSFPAGEDAARQRWAEFVDADLADYDEIRDDPAADATSRMSAYLKY 228 Query: 252 GVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWT 311 G + PR L GA ++L EL +R+FY ++ +P Sbjct: 229 GNIHPRTLAVDL---------GKGKGAQAYLRELAFRDFYADVLWHWPHSLWHNWNR-RF 278 Query: 312 EKIEWNKDS---HLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVD 368 + IE + D + WK G TGFP++DA MRQLN GWMHNR+RMITASFLVKDL + Sbjct: 279 DAIELDTDDAAYERFEVWKAGRTGFPLVDAGMRQLNETGWMHNRVRMITASFLVKDLHLP 338 Query: 369 WRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHW 428 W G EYF+ QL+DGD+ASNN GWQWAA TG D+ PYFR+FNP Q K+FDP+G ++R W Sbjct: 339 WWWGAEYFLEQLVDGDMASNNHGWQWAAGTGTDAAPYFRVFNPQTQAKKFDPKGEYVRRW 398 Query: 429 LPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477 + ++ + +YP PIVDH L +Y Sbjct: 399 VGDVE-------------------ADDYPGPIVDHSAERAEALRRYGEI 428 >gi|167626681|ref|YP_001677181.1| deoxyribodipyrimidine photo-lyase [Francisella philomiragia subsp. philomiragia ATCC 25017] gi|167596682|gb|ABZ86680.1| Deoxyribodipyrimidine photo-lyase [Francisella philomiragia subsp. philomiragia ATCC 25017] Length = 499 Score = 347 bits (891), Expect = 2e-93, Method: Composition-based stats. Identities = 126/483 (26%), Positives = 212/483 (43%), Gaps = 31/483 (6%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 + +VW + DLRI DN AL A D V+ ++I PE W+Q +S RQ F+ L ++ Sbjct: 1 MQVVWFKRDLRIYDNLALTQAATKGD--VLPIYIIEPELWQQPDMSHRQYLFLSECLEEL 58 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEV-RRDKLLEKRL 127 L++ G D++E + Q + ++ +++ N +RD LEK Sbjct: 59 NTELTRLGQPLILM----IGDAVEVFEQLIQQYPINSVWSHQETWNNWTYQRDIKLEKFF 114 Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187 + I ++ H K + K + + +V+A + + + P Sbjct: 115 KQNNIVWHQPYQ-----NGVVRHLADRDKWALVWHKRVSEKIVEAPNKLKFICENQTKIP 169 Query: 188 VTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIP--AIQGTSQL 245 S + G AL IL F ++ Y ++ P A + S+L Sbjct: 170 TAES-----IGLEYDNCYKRQKGGRVRALRILDSFLYQRGCGYTKEMSSPVTAFKSCSRL 224 Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLI-------KPKSGAFSWLNELIWREFYRHLMAFY 298 SPY++ G +S R+ + + ++ + K S S+L+ L W + + Sbjct: 225 SPYIAFGAISIREVYQLANQRKKEIKVSSIKNKTKWLSAMRSFLSRLRWHCHFMQKLEDQ 284 Query: 299 PSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITA 358 PS+ + + + + +AWK G TG+P+IDA MR L GW++ R+R + Sbjct: 285 PSIEYENLHSAYDQLRKEPINQQYFEAWKTGNTGYPMIDACMRALIATGWLNFRMRAMLM 344 Query: 359 SFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRF 418 SF L +DWR+ Y D + + Q +G + RI+NP Q Sbjct: 345 SFASYHLWLDWRVTSIYLARLFTDYEPGIHYSQVQMQ--SGTTGINSIRIYNPIKQSIDQ 402 Query: 419 DPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478 DP G FI+ W+PEL NV + IH P WL+K++ +++YP PI+D K+A + Y + Sbjct: 403 DPNGEFIKRWIPELENVSNENIHTP--WLEKHN-AVDYPDPIIDEKQARKFAADNIYKIR 459 Query: 479 KQS 481 K S Sbjct: 460 KDS 462 >gi|285017930|ref|YP_003375641.1| deoxyribodipyrimidine photo-lyase; photolyase [Xanthomonas albilineans GPE PC73] gi|283473148|emb|CBA15654.1| putative deoxyribodipyrimidine photo-lyase; photolyase protein [Xanthomonas albilineans] Length = 503 Score = 347 bits (891), Expect = 2e-93, Method: Composition-based stats. Identities = 146/469 (31%), Positives = 221/469 (47%), Gaps = 19/469 (4%) Query: 4 TTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYA 63 MS +VW R DLR+ D AL+AA V V++ +PE A ++ Sbjct: 28 RVRMSYAIVWFRRDLRLHDQPALHAALAAGHTPV-PVYLHSPEDEGDWAAGAASCAWLQR 86 Query: 64 SLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLL 123 SL + L G + + L + +++NR+YE RD L Sbjct: 87 SLAALDAQLRACGSRLILRRGP----AEHALRQVIAECGAVAVYWNRRYEPATQPRDARL 142 Query: 124 EKRLQH-RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNL-----VQADLRSL 177 ++ L+ + S + ++L P + YKV+TPF ++ + + A Sbjct: 143 KRELRALGLEVHSHNGALLFEPWQLATQQGGPYKVFTPFWRSALSRWQVPAPMHAPATLP 202 Query: 178 PVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIP 237 P P + + + D+ + + GEQ A L F + YV RD P Sbjct: 203 PPPQALHSLALDALGLMSAHDWD-RGFWECWQPGEQGAHEALDVFVDGALRDYVAGRDRP 261 Query: 238 AIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAF 297 GTS+LSP+L G ++P + + L++ + ++ +L WR+F HL+ Sbjct: 262 DQVGTSRLSPHLHFGEIAPWRIVSALQQHRRAATG---TAIDGYIRQLGWRDFAYHLLHH 318 Query: 298 YPSVCMGKPFIPWTEKIEWNK-DSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMI 356 +P + P E+ W LQAW++G +G PI+DA +R+L GWMHNR+RMI Sbjct: 319 FPHTPE-RNLNPRFERFRWATPGPVQLQAWQRGRSGVPIVDAGLRELWRTGWMHNRVRMI 377 Query: 357 TASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGK 416 AS+L K L V W G +F L+D DLA+N GWQW A TG D+ PYFR+FNP Q + Sbjct: 378 VASYLCKHLRVHWSEGARWFWDTLVDADLANNTLGWQWVAGTGADAAPYFRVFNPVTQAQ 437 Query: 417 RFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDK-NDLSLNYPL-PIVDH 463 +FDPQG +I W+PEL +P AP + ++ +YP PIVD Sbjct: 438 KFDPQGAYIARWVPELAALPVADRFAPWLVPQRLARVAPHYPRQPIVDL 486 >gi|206603959|gb|EDZ40439.1| Deoxyribodipyrimidine photolyase [Leptospirillum sp. Group II '5-way CG'] Length = 534 Score = 347 bits (890), Expect = 2e-93, Method: Composition-based stats. Identities = 147/477 (30%), Positives = 229/477 (48%), Gaps = 27/477 (5%) Query: 10 HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69 +VW RN+LR+ DN L A ++ VF+ E + + + SL ++ Sbjct: 62 SIVWFRNNLRLLDNPPLREAAERG--PLLPVFV--GEHPGKQPPEGARQWWQARSLRRLD 117 Query: 70 KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH 129 SLS++G + + D L + + K+ + + R L+ L Sbjct: 118 HSLSRRGAPLLFLRG----DPATLLPDLATRLKADKILAMEAIDPDGRRTQSRLQGALSG 173 Query: 130 R-VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLP-----VPAIR 183 + V F L+ P + +KV+TPF + +L P +P R Sbjct: 174 KPVELHLFPADYLISPADLPAGRRSPWKVFTPFWQRAQSHLPPPLPLPAPDRLDGIPFPR 233 Query: 184 LTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS 243 P P D+ + + + GE+ A L F ++++ Y +RD +S Sbjct: 234 TETPDDWGWEPENPDWATE-MRGFWDPGEEGAWRRLHAFLEKRLENYRVRRDFLEEDTSS 292 Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCM 303 LSP+L+ G +S R W +KE P +L+EL WREF HLM +P + Sbjct: 293 LLSPHLANGEISIRSVWWAIKE-----STAPDKDREKFLSELGWREFSAHLMWHHPDLAS 347 Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363 + E I W +D L AW++G TG P++DA MRQL +G++ NR+RM+ ASFLVK Sbjct: 348 ERLHKERPE-IRWREDPFSLLAWQKGRTGIPLVDAGMRQLRRLGFLPNRVRMVAASFLVK 406 Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423 +LL+DWR G E+F L+D D A+N WQW + G D+ P+FRIFNP +QG++FDP+G Sbjct: 407 NLLIDWRKGREWFADNLVDHDPANNAASWQWISGYGADAAPWFRIFNPVLQGEKFDPEGR 466 Query: 424 FIRHWLPELNNVPTQYIHAPH----SWLDKNDLSLNYPL--PIVDHKKACHHTLNQY 474 +++ +LPEL+ + +YIH P + LD + P PIVD + L + Sbjct: 467 YVKTYLPELHGLSPRYIHCPWTAPAALLDSAGIGEQSPYRNPIVDLGLSRKRALQAW 523 >gi|115738187|ref|XP_785873.2| PREDICTED: similar to Cry1-A protein [Strongylocentrotus purpuratus] gi|115977051|ref|XP_001194752.1| PREDICTED: similar to Cry1-A protein [Strongylocentrotus purpuratus] Length = 516 Score = 347 bits (890), Expect = 3e-93, Method: Composition-based stats. Identities = 130/491 (26%), Positives = 197/491 (40%), Gaps = 31/491 (6%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 + W R LR+ DN AL ++ ++I P + F+ L + Sbjct: 21 VHWFRKGLRLHDNPALKEGLKSASGF-RCIYILDPWFAGSCSKGVNRWRFLLECLEDLDS 79 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130 SL + + + L + +VT+L + E RDK + Q Sbjct: 80 SLRKLNSRLFLIRG----QPADVLPRLFKEWKVTQLSFEEDSEPFGRTRDKAISTLAQEA 135 Query: 131 VI-CKSFDDSVLLPPGSILN-HALQMYKVYTPFRKALIQNLVQ-ADLRSLPVPAIRLTGP 187 + S L P IL + + Y F+ + + +L + Sbjct: 136 GVKVISKVSHTLYDPQEILALNNNEPPLTYKRFQDIISLMGIPIYPAEALEAEDVEGLDT 195 Query: 188 VTPSN------IPRFFDYPFQAID---PMFPIGEQNALHILRKFCKEKVY--YYVEQRDI 236 N IP + F D PM+ GE A L + + K + + R Sbjct: 196 FIDPNHEDKYGIPTLEELGFDPEDVPPPMWIGGETEAKQRLDRHLERKAWVANFERPRMS 255 Query: 237 PA--IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHL 294 PA + + LSPYL G LSPR + +L E + + K + S +L+WREF+ + Sbjct: 256 PASLMASPAGLSPYLRFGCLSPRTFYWKLTELYQKVR-KTTNTPLSLHGQLLWREFFFTV 314 Query: 295 MAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLR 354 P +I W+K++ LL W G TG+P IDA M QL GW+H R Sbjct: 315 ACNN-RQFDHMVDNPICIQIPWDKNTALLNKWANGETGYPWIDAIMTQLRLEGWIHPLAR 373 Query: 355 MITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTI 413 A FL + DL + W G + F LLD D + N G W W S + +F + P Sbjct: 374 HAVACFLTRGDLWISWEEGMKVFDEYLLDADWSVNAGNWIW-LSCSSFYQQFFHCYCPVK 432 Query: 414 QGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWL------DKNDLSLNYPLPIVDHKKAC 467 G+R DP G ++R +LP L N P++YI P + K + +YPLPIVDH +A Sbjct: 433 FGRRTDPNGDYVRKYLPFLKNFPSKYIFEPWTAPIEVQEKAKCIIGKDYPLPIVDHAEAS 492 Query: 468 HHTLNQYYAAK 478 H + + Sbjct: 493 HRNIERMRKVY 503 >gi|242020203|ref|XP_002430545.1| Deoxyribodipyrimidine photo-lyase, putative [Pediculus humanus corporis] gi|212515709|gb|EEB17807.1| Deoxyribodipyrimidine photo-lyase, putative [Pediculus humanus corporis] Length = 506 Score = 347 bits (890), Expect = 3e-93, Method: Composition-based stats. Identities = 125/502 (24%), Positives = 193/502 (38%), Gaps = 32/502 (6%) Query: 2 KATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFI 61 + + + W R LR+ DN +L NS VF+ P + + F+ Sbjct: 5 SSQNSGKHTVHWFRKGLRLHDNPSLREGIKNS-VTFRCVFVIDPWFAGSSNVGINKWRFL 63 Query: 62 YASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDK 121 L + +SL + + + L + T L + E RD Sbjct: 64 LQCLEDLDRSLRKLNSRLFVIRG----QPADTLPKLFKEWGTTNLTFEEDPEPFGRVRDL 119 Query: 122 LLEKRLQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVP 180 + + I S L I+ + + +I N+ V Sbjct: 120 NIMAMCKELGISVVSKSSHTLYKLEHIIEKNGGNPPLTYHQFQTIIANIGPPPEPEETVT 179 Query: 181 AIRLTGPVTPSN--------IPRFFDYPFQAID---PMFPIGEQNALHILRKFCKEKVYY 229 A L G TP + +P + F+ ++ GE AL L + + K + Sbjct: 180 ANLLEGSQTPLSDDHDNKYGVPTLEELGFETDKLKPTVWSGGESEALARLERHLERKAWV 239 Query: 230 YVEQRDIPAIQGT----SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNEL 285 Q + LSPYL G LS R + +L E + IK S +L Sbjct: 240 ASFGHPKMTPQSLLASQTGLSPYLRFGCLSTRLFYYQLVELYKK--IKKAMPPLSLHGQL 297 Query: 286 IWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNT 345 +WREF+ P+ P +I W++++ L W G TGFP IDA M QL Sbjct: 298 LWREFFYCAATKNPNFDKMNE-NPICVQIPWDENAQALAKWANGQTGFPWIDAIMTQLRE 356 Query: 346 IGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVP 404 GW+H+ R A FL + DL + W G + F LLD D + N G W W S + Sbjct: 357 EGWIHHLARHAVACFLTRGDLWISWEEGMKVFDELLLDADWSVNAGMWMW-LSCSSFFQQ 415 Query: 405 YFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLD------KNDLSLNYPL 458 +F + P G++ DP G +IR +LP L N PT+YIH P + K + ++PL Sbjct: 416 FFHCYCPVRFGRKADPNGDYIRKYLPILKNFPTKYIHEPWLAPETEQRAAKCIIGKDFPL 475 Query: 459 PIVDHKKACHHTLNQYYAAKKQ 480 P+V+H + + +Q Sbjct: 476 PMVNHSIVSKINIERMKQVYRQ 497 >gi|306835185|ref|ZP_07468221.1| possible deoxyribodipyrimidine photo-lyase [Corynebacterium accolens ATCC 49726] gi|304568940|gb|EFM44469.1| possible deoxyribodipyrimidine photo-lyase [Corynebacterium accolens ATCC 49726] Length = 445 Score = 347 bits (889), Expect = 3e-93, Method: Composition-based stats. Identities = 145/481 (30%), Positives = 219/481 (45%), Gaps = 51/481 (10%) Query: 9 VHLVWLRNDLRITDNKALYAACHN------SDAKVIAVFIATPEQWRQHGISARQSHFIY 62 L+W R+DLR++DN+AL A S +++AV + P + + Sbjct: 2 TSLMWFRDDLRLSDNQALTRAAEAATDKNGSKPELVAVVLDEPAYPSTRPLGGATHWWRE 61 Query: 63 ASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKL 122 SL + + L+ +G+ D+ + S + + +NR+Y D Sbjct: 62 RSLHALAQELASRGVKLL----RATGDARTVIPSIAHEVGADTVTWNRRYHGPLREVDAR 117 Query: 123 LEKRLQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPA 181 ++ L I S L+ P + N YKV+TPF A L + +P Sbjct: 118 VKATLADAGINAISCPGFTLVEPWEVTNAQGNPYKVFTPFAAAARSQLADEEPLPVPELL 177 Query: 182 I--RLTGPVTPSNIPRFFDYPFQA--IDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIP 237 + + S D P A + + GE A L + + +Y E+RDIP Sbjct: 178 AGREMGASASSSWPNPSADEPQWAASLAQYWTPGEAGARERLGQL---DLAHYAEERDIP 234 Query: 238 AIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAF 297 A TS LSP+L G +SPR+ W EE A + +EL+WR+F H + Sbjct: 235 ARNATSLLSPHLRFGEVSPREVWVAAAEE---------PDAEKFQSELLWRDFAWHRLYH 285 Query: 298 YPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMIT 357 P + + + +W+ + L+ W++G TG P++DA MR+L G+MHNR+RM+ Sbjct: 286 LPDLAT-RNVRQKFNRFDWSWNDPRLKDWQEGTTGIPLVDAGMRELWHTGYMHNRVRMVV 344 Query: 358 ASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKR 417 SFL K+L + WR+GEE+F L+D D ASN WQW A G+D+ P+FRIFNP Q +R Sbjct: 345 GSFLTKNLGIHWRLGEEWFWDTLVDADAASNPFNWQWVAGCGDDAAPFFRIFNPETQAQR 404 Query: 418 FDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477 FDP G +IR W P L+ AP PIVD +++ L Y Sbjct: 405 FDPDGAYIRQWAPTLS--------AP---------------PIVDLRQSRQAALEAYAEI 441 Query: 478 K 478 K Sbjct: 442 K 442 >gi|258654813|ref|YP_003203969.1| deoxyribodipyrimidine photo-lyase [Nakamurella multipartita DSM 44233] gi|258558038|gb|ACV80980.1| Deoxyribodipyrimidine photo-lyase [Nakamurella multipartita DSM 44233] Length = 459 Score = 347 bits (889), Expect = 3e-93, Method: Composition-based stats. Identities = 153/475 (32%), Positives = 224/475 (47%), Gaps = 26/475 (5%) Query: 8 SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67 S L+W R DLR+ D+ AL AA + + +V+ VF+A + + + +L Sbjct: 3 STSLLWFRRDLRLGDHPALAAAA-DHNHRVLGVFVADDVPLDA--SGSPRRAVLARTLAA 59 Query: 68 VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127 + +++ + ++ S L + + Y RRD+ +++ L Sbjct: 60 LAQAMDGRLLIAHGRPRS-------VLPRLARAVDADVVHVSADYGPYGRRRDEQVQRAL 112 Query: 128 QH-RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 Q V + + PG + + Y V+TPF + + + RS G Sbjct: 113 QDAGVEWVATGSPYAVAPGRVRKSNGERYAVFTPFYRGWTDHGWRKPARSGSGVDWVDPG 172 Query: 187 PVTPSNIPRFFDYPFQAID--PMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244 V +Y + +GEQ AL R F E + Y RD P GTS Sbjct: 173 EVDGITAHDPQEYARTVPAGMSLPEVGEQAALDGWRTFRDEALDDYDGDRDRPDRPGTSH 232 Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304 +S YL G + PR DL + +GA S+ EL WREFY + P + Sbjct: 233 MSVYLKWGSIHPRTLL-------ADLAGRRSTGAASYRRELAWREFYADSVFHLPE-SVW 284 Query: 305 KPFIPWTEKIEWNK---DSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFL 361 P +++ W+ +AW+ G TG+P IDA MRQL GWMHNRLRM TASFL Sbjct: 285 TSVDPVIDRMAWDSGQPAEERFEAWRAGRTGYPFIDAGMRQLLAEGWMHNRLRMATASFL 344 Query: 362 VKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQ 421 +KDL + W+ G E+F+ L+DGD ASNN GWQW A +G + P+FRIFNP QG++FDP Sbjct: 345 IKDLHLPWQRGAEHFLEHLVDGDYASNNHGWQWVAGSGAQAAPFFRIFNPLTQGEKFDPS 404 Query: 422 GTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYA 476 G F+R ++PEL +VP + +H P W + YP PIVDH L ++ Sbjct: 405 GDFVRRYIPELRDVPGRKVHRP--WELDGGVPAGYPEPIVDHADERAEALRRWQQ 457 >gi|227502618|ref|ZP_03932667.1| possible deoxyribodipyrimidine photo-lyase [Corynebacterium accolens ATCC 49725] gi|227076658|gb|EEI14621.1| possible deoxyribodipyrimidine photo-lyase [Corynebacterium accolens ATCC 49725] Length = 445 Score = 347 bits (889), Expect = 3e-93, Method: Composition-based stats. Identities = 144/484 (29%), Positives = 220/484 (45%), Gaps = 51/484 (10%) Query: 9 VHLVWLRNDLRITDNKALYAACHN------SDAKVIAVFIATPEQWRQHGISARQSHFIY 62 L+W R+DLR++DN+AL A S +++AV + P + + Sbjct: 2 TSLMWFRDDLRLSDNQALTRAAEAATDKNGSKPELVAVVLDEPAYPSTRPLGGATHWWRE 61 Query: 63 ASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKL 122 SL + + L+ +G+ D+ + + + +NR+Y D Sbjct: 62 RSLHALAQELASRGVKLL----RATGDARTVIPRIAHEVGADTVTWNRRYHGPLREVDAR 117 Query: 123 LEKRLQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPA 181 ++ L I S L+ P + N YKV+TPF A L + +P Sbjct: 118 VKATLADAGINAISCPGFTLVEPWEVTNAQGNPYKVFTPFAAAARSQLADEEPLPVPELL 177 Query: 182 I--RLTGPVTPSNIPRFFDYPFQA--IDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIP 237 + + S D P A + + GE A L + + +Y E+RDIP Sbjct: 178 AGREMGASASSSWPNPSADEPQWAASLAQYWTPGEAGARERLAQL---DLAHYAEERDIP 234 Query: 238 AIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAF 297 A TS LSP+L G +SPR+ W EE A + +EL+WR+F H + Sbjct: 235 ARNATSLLSPHLRFGEVSPREVWVAAAEE---------PDAEKFQSELLWRDFAWHRLYH 285 Query: 298 YPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMIT 357 P + + + +W+ + L+ W++G TG P++DA MR+L G+MHNR+RM+ Sbjct: 286 LPDLAT-RNVRQKFNRFDWSWNDPRLKDWQEGTTGIPLVDAGMRELWHTGYMHNRVRMVV 344 Query: 358 ASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKR 417 SFL K+L + WR+GEE+F L+D D ASN WQW A G+D+ P+FRIFNP Q +R Sbjct: 345 GSFLTKNLGIHWRLGEEWFWDTLVDADAASNPFNWQWVAGCGDDAAPFFRIFNPETQAQR 404 Query: 418 FDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477 FDP G +IR W P L+ AP PIVD +++ L+ Y Sbjct: 405 FDPDGAYIRQWAPTLS--------AP---------------PIVDLRQSRQAALDAYAEI 441 Query: 478 KKQS 481 K + Sbjct: 442 KDAN 445 >gi|86605025|ref|YP_473788.1| deoxyribodipyrimidine photolyase [Synechococcus sp. JA-3-3Ab] gi|86553567|gb|ABC98525.1| deoxyribodipyrimidine photolyase [Synechococcus sp. JA-3-3Ab] Length = 488 Score = 347 bits (889), Expect = 3e-93, Method: Composition-based stats. Identities = 131/488 (26%), Positives = 223/488 (45%), Gaps = 31/488 (6%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQ-----HGISARQSHFIYASL 65 L+W R DLR+ D++ L AC + +I ++ P + + ++ F+ SL Sbjct: 4 LLWFRTDLRLLDHQPLTRACQQG-SFLIPLYCLDPRHFGRTAFGFPKTGPFRAQFLLESL 62 Query: 66 LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125 +++ L +G Q + + + + V ++ + + E + L++ Sbjct: 63 ADLRQQLRARGSDLVIRQGQPE----QVIPALAREWGVKAVYAHEEVGTEEEAVARALQQ 118 Query: 126 RLQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL 184 LQ I L P + + +V+T FR+ + L Sbjct: 119 ALQPLGIPLHLEWGHTLYHPADLPFALADLPEVFTRFRQQVEAK-AAIRAPLPIPSLPPL 177 Query: 185 TGPVTPSNIPRFFDYPFQAIDP------MFPIGEQNALHILRKFCKE--KVYYYVEQRD- 235 + P +P + P ++ G A L+ + + ++ Y E R+ Sbjct: 178 PPGLDPGPLPTLAELGLSLPPPDPRARFVYAGGSTAAQARLQTYIWDLDRLRVYKETRNG 237 Query: 236 IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLM 295 + +S+LS +L++G LSPR + +K + + + + EL+WR+++R ++ Sbjct: 238 MLDPNDSSRLSAWLALGCLSPRTVYAEVKRYEEERV--RNESTYWLVFELLWRDYFRFIL 295 Query: 296 AFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRM 355 A + + I I W +D QAW +G TG+P++DA MR+L G+M NR R Sbjct: 296 AKHGAKLFCPAGIQGI-PIPWQQDGDRFQAWCRGETGYPLVDANMRELAATGFMSNRGRQ 354 Query: 356 ITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQG 415 ASFL K+L +DWR+G E+F S L+D D+ASN G W + A GND+ FR F+ Q Sbjct: 355 NVASFLTKNLGIDWRLGAEWFESLLIDYDVASNYGNWNYTAGVGNDARG-FRYFHIPKQS 413 Query: 416 KRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND------LSLNYPLPIVDHKKACHH 469 + +DPQG ++RHWLPEL +P IH P+ L ++YP P+VD K+ Sbjct: 414 RDYDPQGHYLRHWLPELAGIPGDKIHEPYRLSAAEQKQFGVRLGVDYPRPVVDLGKSLQA 473 Query: 470 TLNQYYAA 477 + Y AA Sbjct: 474 SRRAYEAA 481 >gi|25027203|ref|NP_737257.1| deoxyribodipyrimidine photolyase [Corynebacterium efficiens YS-314] gi|23492484|dbj|BAC17457.1| deoxyribodipyrimidine photolyase [Corynebacterium efficiens YS-314] Length = 492 Score = 347 bits (889), Expect = 3e-93, Method: Composition-based stats. Identities = 163/507 (32%), Positives = 222/507 (43%), Gaps = 60/507 (11%) Query: 1 MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHF 60 M +TA S +VW R+DLRI DN AL A VI +FI +Q R G +AR Sbjct: 17 MSLSTA-SPTIVWFRDDLRIRDNAALAWAADRG--PVIGLFI-DEDQPRALGGAARWWR- 71 Query: 61 IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120 SL + +L+ G+ D + L + + +NR+Y RD Sbjct: 72 -DRSLTLLVDALATHGVPLLRRSG----DPVVLLTEVVRETGAAAVTWNRRYHGPLRERD 126 Query: 121 KLLEKRLQHRV-ICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPV 179 ++ +L+ + S +L P + + A YKVYTPF KA ++ R Sbjct: 127 AEIKTQLREQGLEVHSHAGFLLTEPWEVTSGAGTGYKVYTPFSKAAFPLADESAARLGDP 186 Query: 180 PAIRLTGPVTPSNIPRFFDYP----FQAIDPMFPIGEQNALHILRKFCKEKVY--YYVEQ 233 +LTGP TP D P + GEQ AL L F Y + Sbjct: 187 MPAQLTGPDTPVADTGGIDAPDPFWAAEMATHCRPGEQAALDRLGDFLDRMRERGGYADG 246 Query: 234 RDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRH 293 RD A TS LSP+L G +S + W + + A + EL+WR+F H Sbjct: 247 RDEMARAVTSGLSPHLRFGEISVHRVWEEITAAAD-AGDIDATDAQVFRKELLWRDFAWH 305 Query: 294 LMAFYPSVCMGKPFIPWTEKIEWNKDSH----------------------LLQAWKQGYT 331 + P + + W D H L AW+ G T Sbjct: 306 RLYALPDMATTN-VREQFNRFGWAWDEHEAARLVDGRHPLSPTSSDEFHVALAAWRAGRT 364 Query: 332 GFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGG 391 G P++DA MR+L G MHNR RM+ ASFL K+L + WR GEE+F L+D D ASN Sbjct: 365 GIPLVDAGMRELWATGSMHNRSRMVVASFLTKNLQIHWRHGEEWFWETLVDADPASNAFN 424 Query: 392 WQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND 451 WQWAA +G+D+ PYFRIFNP Q ++FDP T+IR W+PE Sbjct: 425 WQWAAGSGDDASPYFRIFNPETQARKFDPDETYIRRWIPEYG------------------ 466 Query: 452 LSLNYPLPIVDHKKACHHTLNQYYAAK 478 + YP PIVD K++ L+ Y A K Sbjct: 467 -TPEYPAPIVDLKESRREALDAYEAVK 492 >gi|228312124|pdb|3FY4|A Chain A, (6-4) Photolyase Crystal Structure gi|228312125|pdb|3FY4|B Chain B, (6-4) Photolyase Crystal Structure gi|228312126|pdb|3FY4|C Chain C, (6-4) Photolyase Crystal Structure gi|2804280|dbj|BAA24449.1| 6-4 photolyase [Arabidopsis thaliana] gi|3929918|dbj|BAA34711.1| 6-4 photolyase [Arabidopsis thaliana] gi|11994334|dbj|BAB02293.1| 6-4 photolyase [Arabidopsis thaliana] Length = 537 Score = 347 bits (889), Expect = 4e-93, Method: Composition-based stats. Identities = 135/504 (26%), Positives = 210/504 (41%), Gaps = 41/504 (8%) Query: 10 HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHG---------ISARQSHF 60 L+W R LR+ DN AL A S+ + VF+ P + F Sbjct: 7 SLIWFRKGLRVHDNPALEYASKGSE-FMYPVFVIDPHYMESDPSAFSPGSSRAGVNRIRF 65 Query: 61 IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120 + SL + SL + G + + + L + +V +L + + D Sbjct: 66 LLESLKDLDSSLKKLGSRLLVFKGEPGEVLVRCL----QEWKVKRLCFEYDTDPYYQALD 121 Query: 121 KLLEKRLQH-RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLP- 178 ++ V S L P I+ + + A + Sbjct: 122 VKVKDYASSTGVEVFSPVSHTLFNPAHIIEKNGGKPPLSYQSFLKVAGEPSCAKSELVMS 181 Query: 179 ---VPAIRLTGPVTPSNIPRFFDYPFQAIDPM----FPIGEQNALHILRKFCKEKVY--Y 229 +P I G + S +P + ++ + F GE AL L K +K + Sbjct: 182 YSSLPPIGDIGNLGISEVPSLEELGYKDDEQADWTPFRGGESEALKRLTKSISDKAWVAN 241 Query: 230 YVEQRDIPAI---QGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELI 286 + + + P+ T+ +SPYL G LS R + L+ + D+ K S S L +L+ Sbjct: 242 FEKPKGDPSAFLKPATTVMSPYLKFGCLSSRYFYQCLQNIYKDVK-KHTSPPVSLLGQLL 300 Query: 287 WREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTI 346 WREF+ P+ K ++I WN+D +L AW+ G TG+P IDA M QL Sbjct: 301 WREFFYTTAFGTPNFDKMKGNR-ICKQIPWNEDHAMLAAWRDGKTGYPWIDAIMVQLLKW 359 Query: 347 GWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPY 405 GWMH+ R A FL + DL + W G + F L+D D A NNG W W S + + Sbjct: 360 GWMHHLARHCVACFLTRGDLFIHWEQGRDVFERLLIDSDWAINNGNWMW-LSCSSFFYQF 418 Query: 406 FRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWL------DKNDLSLNYPLP 459 RI++P GK++DP G +IRH+LP L ++P QYI+ P + + +YP P Sbjct: 419 NRIYSPISFGKKYDPDGKYIRHFLPVLKDMPKQYIYEPWTAPLSVQTKANCIVGKDYPKP 478 Query: 460 IVDHKKA---CHHTLNQYYAAKKQ 480 +V H A C + + YA K+ Sbjct: 479 MVLHDSASKECKRKMGEAYALNKK 502 >gi|41409179|ref|NP_962015.1| Phr [Mycobacterium avium subsp. paratuberculosis K-10] gi|41397999|gb|AAS05629.1| Phr [Mycobacterium avium subsp. paratuberculosis K-10] Length = 442 Score = 346 bits (888), Expect = 4e-93, Method: Composition-based stats. Identities = 140/472 (29%), Positives = 215/472 (45%), Gaps = 34/472 (7%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 L+W R DLR+ D+ AL AA + + V+A F+ P Q R+ F+ SL + Sbjct: 2 PALLWFRRDLRLHDHPALSAAADSDE--VLACFVLDPRL--QRSSGPRRLQFLGDSLRVL 57 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128 + L + +V + + + + + + + + RRD + L Sbjct: 58 RDELDGRLLVTRGRPDIRIPEIAKAI-------GASSVHVSEDFTPFGKRRDARVRAALA 110 Query: 129 HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188 V + L+ PG + Y+V+TPF + + +++ A L Sbjct: 111 S-VPLVATGSPYLVAPGRVTKPDGSPYQVFTPFLRRWRDTGWRPPVKTGAASARWLDPAR 169 Query: 189 TPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPY 248 + P GE+ A + + F + Y + R P I+GTS++S + Sbjct: 170 LGITDC---EIPDPGATLDLAAGEEAARNKWKSFVDNGLANYADDRHRPDIEGTSRMSAH 226 Query: 249 LSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFI 308 L G + PR L + A ++L EL +R+FY ++ P+ + + Sbjct: 227 LKFGTIHPRTLVA--------DLDLRAAAARAYLRELAFRDFYADVLHHRPASAW-RNWN 277 Query: 309 PWTEKIEWNKDSHL---LQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365 + I + + AWK G TGFP +DA MRQL G+MHNR+RM ASFLVKDL Sbjct: 278 SAFDAIRTDTGAEAGRRFAAWKAGETGFPFVDAGMRQLRQTGFMHNRVRMTVASFLVKDL 337 Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425 + W+ G +F+ QL+DGDLA+N GWQW A G D+ PYFR+FNP QG++FDP G +I Sbjct: 338 HLPWQWGAHWFLQQLVDGDLANNQHGWQWCAGCGTDAAPYFRVFNPAAQGEKFDPSGDYI 397 Query: 426 RHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477 R W+PEL + L + YP PIVDH L +Y + Sbjct: 398 RRWVPELRCADDPH-------LRTGERPPGYPAPIVDHATERAEALRRYRSM 442 >gi|130157|sp|P12768|PHR_STRGR RecName: Full=Deoxyribodipyrimidine photo-lyase; AltName: Full=DNA photolyase; AltName: Full=Photoreactivating enzyme gi|47083|emb|CAA33161.1| unnamed protein product [Streptomyces griseus] Length = 455 Score = 346 bits (888), Expect = 4e-93, Method: Composition-based stats. Identities = 138/473 (29%), Positives = 219/473 (46%), Gaps = 28/473 (5%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 MSV +V +DLR+ DN L AA ++D +V+ +F+ R + F+ L Sbjct: 1 MSVAVVLFTSDLRLHDNPVLRAALRDAD-EVVPLFVRDDAVHRAGFDAPNPLAFLADCLA 59 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 + L +G + ++ + + ++ RR++ + + Sbjct: 60 ALDAGLRHRGGRLIVRRG----EAATEVRRVAEETGAARVHIAAGVSRYAARREQRIREA 115 Query: 127 LQHRVICKSFDDSVL--LPPGSI-LNHALQMYKVYTPFRKALIQNLV---QADLRSLPVP 180 L D+V+ L PG + + V+TP+ + V Q R++ VP Sbjct: 116 LADSGRELHVHDAVVTALAPGRVVPTGGKDHFAVFTPYFRRWEAEGVRGTQTAPRTVRVP 175 Query: 181 AIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ 240 + P+ + + GE+ ++ + + Y + D A Sbjct: 176 DGVASDPLPDRDCVENLSPG------LARGGEEAGRKLVTSWLNGPMADYEDGHDDLAGD 229 Query: 241 GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPS 300 TS+LSP+L G +S + +R +E K G +++ +L WR+F+ ++A P Sbjct: 230 ATSRLSPHLHFGTVSAAELVHRARE-------KGGLGGEAFVRQLAWRDFHHQVLADRPD 282 Query: 301 VCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASF 360 + P ++ W D+ + AWK G TG+P++DAAMRQL GWMHNR RM+ ASF Sbjct: 283 ASWS-DYRPRHDR--WRSDADEMHAWKSGLTGYPLVDAAMRQLAHEGWMHNRARMLAASF 339 Query: 361 LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDP 420 L K L VDWR G +F+ L+DGD+A+N WQW A TG D+ P R+ NP IQGKRFD Sbjct: 340 LTKTLYVDWREGARHFLDLLVDGDVANNQLNWQWVAGTGTDTRP-NRVLNPVIQGKRFDA 398 Query: 421 QGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQ 473 +G ++R W+PEL V IH P + L+YP P+VD +A Sbjct: 399 RGDYVRGWVPELAEVEGSAIHEPWKLQGLDRAGLDYPDPVVDLAEARARFERA 451 >gi|227538334|ref|ZP_03968383.1| deoxyribodipyrimidine photolyase PhrB1 [Sphingobacterium spiritivorum ATCC 33300] gi|227241849|gb|EEI91864.1| deoxyribodipyrimidine photolyase PhrB1 [Sphingobacterium spiritivorum ATCC 33300] Length = 437 Score = 346 bits (888), Expect = 4e-93, Method: Composition-based stats. Identities = 155/481 (32%), Positives = 229/481 (47%), Gaps = 49/481 (10%) Query: 5 TAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQW-RQHGISARQSHFIYA 63 +A+ + W R DLR+ DN AL+ A +S+A V VFI R + + FIY Sbjct: 2 SAVPTSIFWFRRDLRLEDNHALFRAL-SSEAAVQPVFIFDSTILTRLDDPADARVTFIYQ 60 Query: 64 SLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLL 123 L +Q+ L G + + + D + + + ++ N YE + RD L+ Sbjct: 61 QLQLLQEQLKPYGSSIK----TYYGDPATVWEEIYEEYKPAAVYVNSDYEPAAITRDLLI 116 Query: 124 EKRLQH-RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQA-DLRSLPVPA 181 + LQ V +F D V+ I+ + Y VYTP++ + L + L S Sbjct: 117 QGILQQYEVDFLTFKDQVIFEKDEIVKNDGLPYTVYTPYKNKWLTTLEEKLPLPSYNSEN 176 Query: 182 IRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ- 240 + +P D F FP K + Y + RDIP+++ Sbjct: 177 LLNNLRQADYTLPSLQDLGFSLSTIPFP----------EKTFFTGIADYADTRDIPSLEN 226 Query: 241 GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPS 300 GTS L +L G +S R+ R ++L+EL+WREF+ + +P Sbjct: 227 GTSHLGVHLRFGTISIRKLVERAYPSQNK----------TYLHELVWREFFMMCLWHFPH 276 Query: 301 VCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASF 360 + + + + I W + +AW G TG+P++DA MR+LNT G+MHNR+RM+TASF Sbjct: 277 -TVNQAYYSKYDHIRWENNLAHFEAWCNGQTGYPLVDAGMRELNTTGFMHNRVRMLTASF 335 Query: 361 LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDP 420 L K LL+DWR GE YF +LLD D ++N G WQWAA G D+ PYFRIFNPTIQ K+FDP Sbjct: 336 LCKHLLIDWRWGEAYFAQKLLDYDQSANIGNWQWAAGCGMDAAPYFRIFNPTIQTKKFDP 395 Query: 421 QGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQ 480 + +I+ W+PE + YP PIV+H A L +Y A + Sbjct: 396 KFVYIKKWVPEFQDFS-------------------YPSPIVEHAWARDRALARYKAGFEH 436 Query: 481 S 481 S Sbjct: 437 S 437 >gi|195387030|ref|XP_002052207.1| GJ17431 [Drosophila virilis] gi|194148664|gb|EDW64362.1| GJ17431 [Drosophila virilis] Length = 541 Score = 346 bits (888), Expect = 5e-93, Method: Composition-based stats. Identities = 138/508 (27%), Positives = 204/508 (40%), Gaps = 38/508 (7%) Query: 1 MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAK-----VIAVFIATPEQWRQHGISA 55 M A VH W R LR+ DN AL +++ A V +FI P + A Sbjct: 1 MSAKRRTLVH--WFRKGLRVHDNPALSQIFNDARASPEKFYVRPIFILDPGILDWMQVGA 58 Query: 56 RQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEIN 115 + F+ SL+ + K L + + D E + + +Q L + E Sbjct: 59 NRWRFLQQSLVDLDKKLKELNSRLYIVRGKPVDVFPELFERWNVQL----LTFESDIEPY 114 Query: 116 EVRRDKLLEK-RLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADL 174 ++RD ++K +H V + + P ++ L V ++ L + Sbjct: 115 ALQRDTTVQKIASEHGVKVDTHCSHTIYNPELVIAKNLGKAPVTYQKFLGIVDKLKLPKV 174 Query: 175 RSLPVPAIRLTGPVTPS------------NIPRFFDYPFQAIDPMFPIGEQNALHILRKF 222 ++P P+ + + P + FP GE AL + Sbjct: 175 LAVPEGLPDGIKPIADEFEAVDSCVYDCPTLDQLVKRPQELGVNKFPGGETEALRRMEAS 234 Query: 223 C--KEKVYYYVEQRDIPA--IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGA 278 + V + + P T+ LSPYL G LS R RLKE V K Sbjct: 235 LIDENWVAAFEKPNTAPNSLEPSTTVLSPYLKFGCLSARLLHERLKEILV-RKPKHSKPP 293 Query: 279 FSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDA 338 S + +L+WREFY + A P+ + +I W K L+AW G TG+P IDA Sbjct: 294 VSLVGQLLWREFYYTVAAADPNFDRMLG-NAYCLQIPWQKQPDHLEAWTHGRTGYPFIDA 352 Query: 339 AMRQLNTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAAS 397 MRQL GW+H+ R A FL + DL + W G+ F LLD D A N G W W S Sbjct: 353 IMRQLRQEGWIHHLARHAVACFLTRGDLWISWEDGQRVFEQLLLDQDWALNAGNWMW-LS 411 Query: 398 TGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND------ 451 YFR+++P GK+ DP G +IR ++PEL P I+ P Sbjct: 412 ASAFFHQYFRVYSPVAFGKKTDPTGAYIRKYVPELAKYPAGCIYEPWKATLSAQREYGCV 471 Query: 452 LSLNYPLPIVDHKKACHHTLNQYYAAKK 479 L ++YP IV+H + + AA K Sbjct: 472 LGVDYPHRIVNHDIVHKENIKRMSAAYK 499 >gi|300774220|ref|ZP_07084087.1| possible deoxyribodipyrimidine photo-lyase [Sphingobacterium spiritivorum ATCC 33861] gi|300758899|gb|EFK55728.1| possible deoxyribodipyrimidine photo-lyase [Sphingobacterium spiritivorum ATCC 33861] Length = 437 Score = 346 bits (887), Expect = 5e-93, Method: Composition-based stats. Identities = 157/481 (32%), Positives = 227/481 (47%), Gaps = 49/481 (10%) Query: 5 TAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQW-RQHGISARQSHFIYA 63 +A+ + W R DLR+ DN AL+ A NS+A V VFI R + + FIY Sbjct: 2 SAVPTVIFWFRRDLRLQDNHALFRAL-NSEAAVQPVFIFDSTILTRLDDPADARVTFIYQ 60 Query: 64 SLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLL 123 L +Q+ L G + + + + + + T ++ N YE + RD L+ Sbjct: 61 QLQLLQEQLKPYGSSIR----TYYGEPATVWEEIYEEYTPTAVYVNSDYEPAAITRDLLV 116 Query: 124 EKRLQH-RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQA-DLRSLPVPA 181 LQ +V +F D V+ I+ + Y VYTP++ + L + L S Sbjct: 117 RGILQQYKVDFNTFKDQVIFEKAEIVKNDGLPYTVYTPYKNKWLTTLEEQLPLPSYTSEN 176 Query: 182 IRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ- 240 + +P D F FP K + Y + RDIP ++ Sbjct: 177 LLKNLRQASYALPSLQDLGFSLSTIPFP----------EKTFFTAIADYADTRDIPGLEN 226 Query: 241 GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPS 300 GTS L +L G +S R+ R ++L+ELIWREF+ + +P Sbjct: 227 GTSHLGIHLRFGTISIRKLVERAYPSQNK----------TYLHELIWREFFMMCLWHFPH 276 Query: 301 VCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASF 360 + + + I W + +AW G TG+P++DA MR+LNT G+MHNR+RM+TASF Sbjct: 277 -TVNHAYYSKYDHIRWENNVAHFEAWCNGQTGYPLVDAGMRELNTTGFMHNRVRMLTASF 335 Query: 361 LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDP 420 L K LL+DWR GE YF +LLD D ++N G WQWAA G D+ PYFRIFNPT+Q K+FDP Sbjct: 336 LCKHLLIDWRWGEAYFAQKLLDYDQSANIGNWQWAAGCGMDAAPYFRIFNPTLQTKKFDP 395 Query: 421 QGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQ 480 Q +I+ W+PE + YP PIV+H A L +Y A + Sbjct: 396 QFVYIKKWVPEFQDFS-------------------YPPPIVEHAWARDRALARYKAGFEH 436 Query: 481 S 481 S Sbjct: 437 S 437 >gi|118496971|ref|YP_898021.1| deoxyribodipyrimidine photolyase [Francisella tularensis subsp. novicida U112] gi|194324200|ref|ZP_03057974.1| deoxyribodipyrimidine photolyase family protein [Francisella tularensis subsp. novicida FTE] gi|118422877|gb|ABK89267.1| deoxyribodipyrimidine photolyase [Francisella novicida U112] gi|194321647|gb|EDX19131.1| deoxyribodipyrimidine photolyase family protein [Francisella tularensis subsp. novicida FTE] Length = 499 Score = 346 bits (887), Expect = 6e-93, Method: Composition-based stats. Identities = 126/483 (26%), Positives = 211/483 (43%), Gaps = 31/483 (6%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 + +VW + DLR+TDN AL A D ++ ++I PE W+Q +S RQ F+ L ++ Sbjct: 1 MQIVWFKRDLRVTDNLALSLAAEKGD--ILPLYIIEPELWQQPDMSHRQYLFLSECLEEL 58 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEV-RRDKLLEKRL 127 L++ G D++E + Q + ++ +++ N +RD LEK Sbjct: 59 NTELTRLGQPLILM----IGDAVEVFEQLIQQYPINSVWSHQETWNNWTYQRDIKLEKFF 114 Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187 + I ++ H K + K + + +V+A + + + P Sbjct: 115 KQNNIVWHQPYQ-----NGVVRHLADRDKWALVWHKRVSEKIVEAPNKLKFICENQTKIP 169 Query: 188 VTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIP--AIQGTSQL 245 S + G AL IL F ++ Y ++ P A + S+L Sbjct: 170 TAES-----IGLEYDNCYKRQKGGRVRALRILDSFLYQRGCGYTKEMSSPVTAFKSCSRL 224 Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLI-------KPKSGAFSWLNELIWREFYRHLMAFY 298 SPY++ G +S R+ + + ++ + K S S+L+ L W + + Sbjct: 225 SPYIAFGAISIREVYQLANQRKKEIKVSSIKNKTKWLSAMRSFLSRLRWHCHFMQKLEDQ 284 Query: 299 PSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITA 358 PS+ + + + +AWK G TG+P+IDA MR L GW++ R+R + Sbjct: 285 PSIEYENLHSAYDQLRTEPLNQQCFEAWKTGNTGYPMIDACMRALIATGWLNFRMRAMLM 344 Query: 359 SFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRF 418 SF L +DWR+ Y D + + Q +G + RI+NP Q Sbjct: 345 SFASYHLWLDWRVTSLYLARLFTDYEPGIHYSQVQMQ--SGTTGINSIRIYNPIKQSIDQ 402 Query: 419 DPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478 DP G F R WLPEL NV + IH P WL+K++ +++YP PI+D K+A + Y + Sbjct: 403 DPNGEFTRRWLPELENVSNENIHTP--WLEKHN-AIDYPDPIIDEKQARKFAADNIYKIR 459 Query: 479 KQS 481 K S Sbjct: 460 KSS 462 >gi|327282060|ref|XP_003225762.1| PREDICTED: cryptochrome-1-like [Anolis carolinensis] Length = 530 Score = 345 bits (886), Expect = 7e-93, Method: Composition-based stats. Identities = 132/495 (26%), Positives = 202/495 (40%), Gaps = 33/495 (6%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 V + W R LR+ DN AL AA NS A++ +FI P + +S + F+ SL + Sbjct: 4 VSIHWFRKGLRLHDNPALLAAMKNS-AEIYPIFILDPWFPKNMQVSINRWRFLIESLKDL 62 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128 +SL + + E + +VT+L + E R +++ + Sbjct: 63 DESLKKLNSRLFVVRG----RPAEVFPELFTKWKVTRLAFEVDTEPYARRDAEVVRLAAE 118 Query: 129 HRVICKSFDDSVLL------------PPGSILNHALQMYKVYTPFRKALIQNLVQADLRS 176 H V L P + + + P + L Sbjct: 119 HGVQVIQKVSHTLYDTERIIVENSGKAPLTYTRLQTLVASLGPPKQPVPAPKLEDMKDCC 178 Query: 177 LPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVY--YYVEQR 234 PV TPS P A ++P GE AL L K + + + Sbjct: 179 TPVKEDHDLEYGTPS-YEELGQDPKTAGPHLYPGGETEALARLDLHMKRTSWVCNFKKPE 237 Query: 235 DIPA--IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYR 292 P T+ LSPY+ G LS R W +L E + K S +L+WREF+ Sbjct: 238 THPNSLTPSTTVLSPYVKFGCLSVRMFWWKLAEVYQGR--KHSDPPVSLHGQLLWREFFY 295 Query: 293 HLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNR 352 A P+ + P +++W+ + L+AW++G TG+P IDA M QL T GW+H+ Sbjct: 296 TAGAGIPNFDRMEN-NPVCVQVDWDNNQEYLRAWREGQTGYPFIDAIMTQLRTEGWIHHL 354 Query: 353 LRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNP 411 R A FL + DL + W G++ F LLD D + N WQW S +FR+++P Sbjct: 355 ARHAVACFLTRGDLWISWEEGQKVFEELLLDADWSLNAANWQW-LSASAFFHQFFRVYSP 413 Query: 412 TIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDK------NDLSLNYPLPIVDHKK 465 GK+ D G +I+ +LP L YI+ P + +YP PIV+H+K Sbjct: 414 VTFGKKTDKNGEYIKKYLPFLRKFSNDYIYEPWKAPRSLQERAGCIIGQDYPKPIVEHEK 473 Query: 466 ACHHTLNQYYAAKKQ 480 L + AA + Sbjct: 474 VYKRNLERMKAAYAR 488 >gi|1304062|dbj|BAA12067.1| photolyase [Drosophila melanogaster] Length = 540 Score = 345 bits (886), Expect = 7e-93, Method: Composition-based stats. Identities = 130/505 (25%), Positives = 200/505 (39%), Gaps = 36/505 (7%) Query: 4 TTAMSVHLVWLRNDLRITDNKALYA---ACHNSDAK--VIAVFIATPEQWRQHGISARQS 58 + S + W R LR+ DN AL A + + K V +FI P + A + Sbjct: 2 DSQRSTLVHWFRKGLRLHDNPALSHIFTAANAAPGKYFVRPIFILDPGILDWMQVGANRW 61 Query: 59 HFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVR 118 F+ +L + L + + E RV L + E V Sbjct: 62 RFLQQTLEDLDNQLRKLNSRLFVVRGKP----AEVFPRIFKSWRVEMLTFETDIEPYSVT 117 Query: 119 RDKLLEKRLQ-HRVICKSFDDSVLLPPGSILNHA------------LQMYKVYTPFRKAL 165 RD ++K + V ++ + P + + ++ P + Sbjct: 118 RDAAVQKLAKAEGVRVETHCSHTIYNPELVKAKNLGKAPITYQKFLGIVEQLKVPKVLGV 177 Query: 166 IQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKE 225 + L + + + I + P + FP GE AL + + K+ Sbjct: 178 PEKLKKMPTPPKDEVEQKDSAAYDCPTIKQLVKRPEELGPNKFPGGETEALRRMEESLKD 237 Query: 226 KVY--YYVEQRDIPA--IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSW 281 +++ + + P T+ LSPYL G LS R +LKE + K S Sbjct: 238 EIWVARFEKPNTAPNSLEPSTTVLSPYLKFGCLSARLFNQKLKE-IIKRQPKHSQPPVSL 296 Query: 282 LNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMR 341 + +L+WREFY + A P+ + +I W + L+AW G TG+P IDA MR Sbjct: 297 IGQLMWREFYYTVAAAEPNFDRMLG-NVYCMQIPWQEHPDHLEAWTHGRTGYPFIDAIMR 355 Query: 342 QLNTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGN 400 QL GW+H+ R A FL + DL + W G+ F LLD D A N G W W S Sbjct: 356 QLRQEGWIHHLARHAVACFLTRGDLWISWEEGQRVFEQLLLDQDWALNAGNWMW-LSASA 414 Query: 401 DSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSW------LDKNDLSL 454 YFR+++P GK+ DPQG +IR ++PEL+ P I+ P L Sbjct: 415 FFHQYFRVYSPVAFGKKTDPQGHYIRKYVPELSKYPATCIYEPWKASLVDQRAYGCVLGT 474 Query: 455 NYPLPIVDHKKACHHTLNQYYAAKK 479 +YP IV H+ + + AA K Sbjct: 475 DYPHRIVKHEVVHKENIKRMGAAYK 499 >gi|328675520|gb|AEB28195.1| Deoxyribodipyrimidine photolyase [Francisella cf. novicida 3523] Length = 499 Score = 345 bits (886), Expect = 7e-93, Method: Composition-based stats. Identities = 132/483 (27%), Positives = 215/483 (44%), Gaps = 31/483 (6%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 + +VW + DLRI DN AL A D V+ ++I PE W+Q +S RQ F+ L ++ Sbjct: 1 MQVVWFKRDLRINDNLALSLASEKGD--VLPLYIIEPELWQQPDMSYRQYLFLSECLEEL 58 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEV-RRDKLLEKRL 127 L++ G D++E + + V ++ + + N +RD LEK Sbjct: 59 NTELTKLGQSLIIM----VGDAVEIFEQLIQKYSVKNIWSHEETWNNWTYQRDIKLEKFF 114 Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187 + I ++ K + K + + L++A + + P Sbjct: 115 KQNNITWHQPYQ-----NGVVRCLADRDKWALLWHKRMSEKLIKAPTELKFICENQTKIP 169 Query: 188 VTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIP--AIQGTSQL 245 T N+ +D ++ G AL IL F E+ Y ++ P A + S+L Sbjct: 170 -TAENLGLEYDNSYKR----QKGGRIRALRILDSFLYERGCGYTKEMSSPVTAFKSCSRL 224 Query: 246 SPYLSIGVLSPRQCWN-------RLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFY 298 SPY++ GV+S ++ + +K+ + K S S+L+ L W + + Sbjct: 225 SPYIAFGVISIKEVYQLANQRKNEIKDSSIKNKTKWLSAMRSFLSRLRWHCHFMQKLEDQ 284 Query: 299 PSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITA 358 PS+ + + + + +AWK G TG+P+IDA MR L GW++ R+R + Sbjct: 285 PSIEYKNLHPAYNQLRKEPINKQYFEAWKTGNTGYPMIDACMRALIATGWLNFRMRAMLM 344 Query: 359 SFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRF 418 SF L +DWRI Y D + + Q +G + RI+NP Q Sbjct: 345 SFASYHLWLDWRITSLYLARLFTDYEPGIHYSQVQMQ--SGTTGINSIRIYNPIKQSIDQ 402 Query: 419 DPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478 DP G FIR W+PEL NV + IH P WL+K++ +++YP PIVD K+A + Y + Sbjct: 403 DPNGEFIRRWVPELENVTDENIHTP--WLEKHN-AVDYPDPIVDEKQARKFAADNVYKIR 459 Query: 479 KQS 481 K S Sbjct: 460 KNS 462 >gi|319949517|ref|ZP_08023567.1| Deoxyribodipyrimidine photo-lyase [Dietzia cinnamea P4] gi|319436807|gb|EFV91877.1| Deoxyribodipyrimidine photo-lyase [Dietzia cinnamea P4] Length = 466 Score = 345 bits (886), Expect = 8e-93, Method: Composition-based stats. Identities = 156/483 (32%), Positives = 229/483 (47%), Gaps = 26/483 (5%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M + ++W R DLR++D+ AL AA D +V+ VF+ P + + ++ + AS+ Sbjct: 1 MGISILWFRRDLRLSDHPALLAAVEAGD-EVLPVFVRDPALLSR---AGARADRMAASIA 56 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 + G D + ++ +R+ RRD + Sbjct: 57 ALS---GDIGGALVVRTG----DPARVIPGLAALTGAREVHVSRESTPYGRRRDGRVRAA 109 Query: 127 LQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQAD---LRSLPVPAI 182 L+ + PG +LN + + Y+V+TPF +A ++ R P A+ Sbjct: 110 LEADGRRLVETGSPYAVGPGRVLNGSGRPYQVFTPFSRAWREHGWPEPGRRPRDDPWAAM 169 Query: 183 RLTG-PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQG 241 P + GE AL R F ++ + +Y +QRD P + Sbjct: 170 PAGELPGDDGDGWGRDTAGGAVRGAAGDAGEAAALARWRAFLEDDLEHYGQQRDRPDLDT 229 Query: 242 TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSV 301 TS+LS L G + PR L GA ++ EL WREFY ++ P Sbjct: 230 TSRLSAPLKYGEIHPRTILADLAAH----PAADGEGARRFVTELAWREFYADVLWHQPRS 285 Query: 302 CMGKPFIPWTEKIEWNKDSH---LLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITA 358 + + +++ L++AW++G TGFP +DA MRQL GWMHNR+RM+TA Sbjct: 286 AW-RDLRDALSGMPYDRGPEVNDLVEAWRRGRTGFPFVDAGMRQLVAQGWMHNRVRMVTA 344 Query: 359 SFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRF 418 SFLVKDL V W +G +F+ LLDGDLASNN GWQW A TG D+ P+FR+FNP QG+RF Sbjct: 345 SFLVKDLHVWWPVGARHFLDHLLDGDLASNNHGWQWVAGTGTDASPFFRVFNPVTQGQRF 404 Query: 419 DPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478 DP G +IR W+PEL ++P H P W D +D YP IVDH + L +Y + Sbjct: 405 DPDGDYIRRWVPELRHLPGAAAHEPWLWPDGHDHG--YPERIVDHAEERLEALRRYDVVR 462 Query: 479 KQS 481 S Sbjct: 463 NGS 465 >gi|123965553|ref|YP_001010634.1| putative DNA photolyase [Prochlorococcus marinus str. MIT 9515] gi|123199919|gb|ABM71527.1| putative DNA photolyase [Prochlorococcus marinus str. MIT 9515] Length = 478 Score = 345 bits (886), Expect = 8e-93, Method: Composition-based stats. Identities = 161/484 (33%), Positives = 233/484 (48%), Gaps = 29/484 (5%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 L W R DLRI DN AL A S+A + + +I + + Q + ++ F+ SL ++ + Sbjct: 7 LFWHRKDLRIYDNNALSKAFSLSNA-ITSTYIFD-QNYSQDFNANSRAWFLGNSLQELSR 64 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH- 129 + G + + + + + +N+ E E+ RD ++ L+ Sbjct: 65 NWETLGSRMIIDE----GNPLTLIPKLAQLIDAKFVAWNKAIEPYEINRDLEIKNTLKKF 120 Query: 130 RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189 ++ D +LL P I + + Y VY PF K L L + +L Sbjct: 121 KIEIIELWDHLLLEPSQIHTGSNKPYTVYGPFYKKLKSKLQLLTSKKNLNNIGKLKDLEI 180 Query: 190 PSNIPRFFDYPFQAIDPMF-------------PIGEQNALHILRKFC-KEKVYYYVEQRD 235 + D ++ GE A +L +F ++K+ Y RD Sbjct: 181 GIKESQKIDSSRLILEKFIKKVNFDGINLCPCKPGEIAAEKLLDQFINQDKIGSYASSRD 240 Query: 236 IPAIQGTSQLSPYLSIGVLSPRQCWNR-LKEEFVDLLIKPKSGAFSWLNELIWREFYRHL 294 P GTS LS L G +S R+ WN L + + K +W EL+WREFY+H Sbjct: 241 FPDQNGTSFLSASLRFGTISIRKVWNSTLFTDLKNKNNHNKISIETWQKELVWREFYQHC 300 Query: 295 MAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLR 354 + +P + G P+ + W + W G TG PIIDAAMRQLN+ GWMHNR R Sbjct: 301 LFHFPELEKG-PYRKKWDHFPWQNNHEWFDRWSNGETGVPIIDAAMRQLNSTGWMHNRCR 359 Query: 355 MITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQ 414 MI ASFLVKDL+ +W++GEE FM L+DGDLA+NNGGWQW+AS+G D P RIFNP Q Sbjct: 360 MIVASFLVKDLICNWQMGEEKFMKVLVDGDLAANNGGWQWSASSGMDPKP-LRIFNPYTQ 418 Query: 415 GKRFDPQGTFIRHWLPELNNVPTQYI-HAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQ 473 K+FDP +I+ W+PEL+ VP + I + S L+KN NY IV+H + Sbjct: 419 TKKFDPICKYIKFWIPELSKVPNKDILNGEISDLEKN----NYYGAIVNHNTQQRLFKDL 474 Query: 474 YYAA 477 Y Sbjct: 475 YAHI 478 >gi|213613247|ref|ZP_03371073.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp. enterica serovar Typhi str. E98-2068] Length = 339 Score = 345 bits (885), Expect = 1e-92, Method: Composition-based stats. Identities = 160/342 (46%), Positives = 225/342 (65%), Gaps = 4/342 (1%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M HLVW R DLR+ DN AL AAC ++ A+V+A++I+TP QW+ H ++ RQ+ FI A L Sbjct: 1 MPTHLVWFRRDLRLQDNLALAAACRDASARVLALYISTPAQWQAHDMAPRQAAFISAQLN 60 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 +Q +L++KGI +H+ ++F+ SIE + + C Q V+ LFYN QYE NE +RD +EK Sbjct: 61 ALQTALAEKGIPLLFHEVADFNASIETVKNVCRQHDVSHLFYNYQYEFNERQRDAAVEKT 120 Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 L VIC+ FDDSV+L PG+++ +MYKV+TPF+ A ++ L + +P P IR++G Sbjct: 121 LPS-VICEGFDDSVILAPGAVMTGNHEMYKVFTPFKNAWLKRLKEDIPPCVPAPKIRVSG 179 Query: 187 PVTPSNIPRFFDYPFQAID-PMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245 ++ P +YP QA D +FP+ E + LR FC + Y +RD PA+ GTS+L Sbjct: 180 ALSIPLTPVSLNYPQQAFDAALFPVEENAVIAQLRHFCSQGADEYASRRDFPAVDGTSRL 239 Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305 S L+ G LSPRQC +RL E L WLNELIWREFYRHLM +YP++C + Sbjct: 240 SASLATGGLSPRQCLHRLLAEQPQALDGGPGSV--WLNELIWREFYRHLMTWYPALCKHQ 297 Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIG 347 PFI WT+++ W ++ H QAW++G TG+PI+DAAMRQLN G Sbjct: 298 PFIRWTKRVAWQENPHYFQAWQKGETGYPIVDAAMRQLNATG 339 >gi|17137248|ref|NP_477188.1| (6-4)-photolyase, isoform B [Drosophila melanogaster] gi|24585455|ref|NP_724274.1| (6-4)-photolyase, isoform A [Drosophila melanogaster] gi|7298691|gb|AAF53904.1| (6-4)-photolyase, isoform B [Drosophila melanogaster] gi|22946921|gb|AAN11080.1| (6-4)-photolyase, isoform A [Drosophila melanogaster] gi|201065459|gb|ACH92139.1| FI01404p [Drosophila melanogaster] Length = 540 Score = 345 bits (885), Expect = 1e-92, Method: Composition-based stats. Identities = 129/505 (25%), Positives = 200/505 (39%), Gaps = 36/505 (7%) Query: 4 TTAMSVHLVWLRNDLRITDNKALYA---ACHNSDAK--VIAVFIATPEQWRQHGISARQS 58 + S + W R LR+ DN AL A + + K V +FI P + A + Sbjct: 2 DSQRSTLVHWFRKGLRLHDNPALSHIFTAANAAPGKYFVRPIFILDPGILDWMQVGANRW 61 Query: 59 HFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVR 118 F+ +L + L + + E RV L + E V Sbjct: 62 RFLQQTLEDLDNQLRKLNSRLFVVRGKP----AEVFPRIFKSWRVEMLTFETDIEPYSVT 117 Query: 119 RDKLLEKRLQ-HRVICKSFDDSVLLPPGSILNHA------------LQMYKVYTPFRKAL 165 RD ++K + V ++ + P ++ + ++ P + Sbjct: 118 RDAAVQKLAKAEGVRVETHCSHTIYNPELVIAKNLGKAPITYQKFLGIVEQLKVPKVLGV 177 Query: 166 IQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKE 225 + L + + + + P + FP GE AL + + K+ Sbjct: 178 PEKLKNMPTPPKDEVEQKDSAAYDCPTMKQLVKRPEELGPNKFPGGETEALRRMEESLKD 237 Query: 226 KVY--YYVEQRDIPA--IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSW 281 +++ + + P T+ LSPYL G LS R +LKE + K S Sbjct: 238 EIWVARFEKPNTAPNSLEPSTTVLSPYLKFGCLSARLFNQKLKE-IIKRQPKHSQPPVSL 296 Query: 282 LNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMR 341 + +L+WREFY + A P+ + +I W + L+AW G TG+P IDA MR Sbjct: 297 IGQLMWREFYYTVAAAEPNFDRMLG-NVYCMQIPWQEHPDHLEAWTHGRTGYPFIDAIMR 355 Query: 342 QLNTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGN 400 QL GW+H+ R A FL + DL + W G+ F LLD D A N G W W S Sbjct: 356 QLRQEGWIHHLARHAVACFLTRGDLWISWEEGQRVFEQLLLDQDWALNAGNWMW-LSASA 414 Query: 401 DSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSW------LDKNDLSL 454 YFR+++P GK+ DPQG +IR ++PEL+ P I+ P L Sbjct: 415 FFHQYFRVYSPVAFGKKTDPQGHYIRKYVPELSKYPAGCIYEPWKASLVDQRAYGCVLGT 474 Query: 455 NYPLPIVDHKKACHHTLNQYYAAKK 479 +YP IV H+ + + AA K Sbjct: 475 DYPHRIVKHEVVHKENIKRMGAAYK 499 >gi|136255185|ref|NP_001077099.1| cryptochrome 2 [Apis mellifera] gi|133754347|gb|ABO38437.1| cryptochrome 2 [Apis mellifera] Length = 570 Score = 345 bits (885), Expect = 1e-92, Method: Composition-based stats. Identities = 120/500 (24%), Positives = 182/500 (36%), Gaps = 32/500 (6%) Query: 4 TTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYA 63 + W R LR+ DN +L + VF+ P I + F+ Sbjct: 17 DEGGKHTVHWFRKGLRLHDNPSLREGLAGASTF-RCVFVLDPWFAGSTNIGINKWRFLLQ 75 Query: 64 SLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLL 123 L + SL + + + L + T L + E RD + Sbjct: 76 CLEDLDCSLRKLNSRLFVIRG----QPADALPKLFKEWGTTNLTFEEDPEPFGRVRDHNI 131 Query: 124 EKRLQHRVI-CKSFDDSVLLPPGSILNHALQ-MYKVYTPFRKALIQNLVQADLRSLPVPA 181 + I L I+ Y F+ + A Sbjct: 132 SALCKELGISVVQKVSHTLYKLDEIIERNGDKPPLTYHQFQTVVASMDPPEPPVPTVTSA 191 Query: 182 IRLTGPVTPSNIP-------RFFDYPFQA---IDPMFPIGEQNALHILRKFCKEKVYYYV 231 + + F + P++ GE AL L + + K + Sbjct: 192 CVGSAYTPLKEDHDDHYGVPTLEELGFDTEGLLPPVWVGGESEALARLERHLERKAWVAS 251 Query: 232 EQRDIPAIQGT----SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIW 287 R Q + LSPYL G LS R + +L + + IK S +L+W Sbjct: 252 FGRPKMTPQSLLPSQTGLSPYLRFGCLSTRLFYYQLTDLYKK--IKKAVPPLSLHGQLLW 309 Query: 288 REFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIG 347 REF+ P+ + P +I W+K+ L W G TGFP IDA M QL G Sbjct: 310 REFFYCAATKNPNFDRMQG-NPICVQIPWDKNVEALAKWANGQTGFPWIDAIMTQLREEG 368 Query: 348 WMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYF 406 W+H+ R A FL + DL + W G + F LLD D + N G W W S + +F Sbjct: 369 WIHHLARHAVACFLTRGDLWISWEEGMKVFDELLLDADWSVNAGMWMW-LSCSSFFQQFF 427 Query: 407 RIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSW------LDKNDLSLNYPLPI 460 + P G++ DP G +IR +LP L N PT+YIH P + K + +Y LP+ Sbjct: 428 HCYCPVRFGRKADPNGDYIRRYLPVLKNFPTRYIHEPWNAPLNVQRAAKCIIGKDYSLPM 487 Query: 461 VDHKKACHHTLNQYYAAKKQ 480 V+H K+ + + +Q Sbjct: 488 VNHSKSSRINIERMKQVYQQ 507 >gi|195030094|ref|XP_001987903.1| GH10854 [Drosophila grimshawi] gi|193903903|gb|EDW02770.1| GH10854 [Drosophila grimshawi] Length = 538 Score = 345 bits (884), Expect = 1e-92, Method: Composition-based stats. Identities = 131/502 (26%), Positives = 199/502 (39%), Gaps = 32/502 (6%) Query: 1 MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAK-----VIAVFIATPEQWRQHGISA 55 M A VH W R LR+ DN AL+ + A V +FI P + A Sbjct: 1 MTAQRRTLVH--WFRKGLRVHDNPALFQIFEVARAAPEKFYVRPIFILDPGILDWMQVGA 58 Query: 56 RQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEIN 115 + F+ SL + + L + D + + +Q L Y E Sbjct: 59 NRWRFLQQSLSDLDQQLRALNTRLFVVRGKPVDIFPGLFERWQVQL----LTYETDIEPY 114 Query: 116 EVRRDKLLEK-RLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADL 174 V RD +++ V + + P ++ L + +++ L + Sbjct: 115 AVLRDAAVQQLAASQGVKVDTHCSHTIYNPELVIVRNLGKPPITYQKFLGIVEKLKLPKV 174 Query: 175 RSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDP------MFPIGEQNALHILRKFCKEKVY 228 + P P+ S+I + P FP GE AL + ++ + Sbjct: 175 LNKPKKLPDGMQPLADSDIYDYPTLEQLVKRPEDLGINKFPGGESEALRRMEASLADEQW 234 Query: 229 --YYVEQRDIPA--IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNE 284 + + + P T+ LSPYL G LS R RL+E K S + + Sbjct: 235 VAKFEKPKTAPNSLEPSTTVLSPYLKFGCLSARLFHERLQEILA-RQPKHSKPPVSLVGQ 293 Query: 285 LIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLN 344 L+WREFY + A P+ + +I W + L+AW G TG+P IDA MRQL Sbjct: 294 LLWREFYYTVAAAEPNFDRMLG-NAYCLQIPWQEQPEHLEAWAHGRTGYPFIDAIMRQLR 352 Query: 345 TIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSV 403 GW+H+ R A FL + DL + W G+ F LLD D A N G W W S Sbjct: 353 QEGWIHHLARHAVACFLTRGDLWISWEEGQRVFEQLLLDQDWALNAGNWMW-LSASAFFH 411 Query: 404 PYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND------LSLNYP 457 YFR+++P GK+ DP+G +I+ ++PEL P + I+ P L +YP Sbjct: 412 QYFRVYSPVAFGKKTDPKGDYIKKYVPELAKYPAKCIYEPWKATLGEQRDYGCVLGSDYP 471 Query: 458 LPIVDHKKACHHTLNQYYAAKK 479 IV+H + + A K Sbjct: 472 HRIVNHDVVHKENIKRMSDAYK 493 >gi|194759941|ref|XP_001962202.1| GF14557 [Drosophila ananassae] gi|190615899|gb|EDV31423.1| GF14557 [Drosophila ananassae] Length = 539 Score = 345 bits (884), Expect = 1e-92, Method: Composition-based stats. Identities = 134/508 (26%), Positives = 202/508 (39%), Gaps = 38/508 (7%) Query: 1 MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAK-----VIAVFIATPEQWRQHGISA 55 M A A VH W R LR+ DN AL ++ V +FI P + A Sbjct: 1 MDAKHATLVH--WFRKGLRVHDNPALSQIFKVANTAPGKYFVRPIFILDPGILDWMQVGA 58 Query: 56 RQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEIN 115 + F+ +L + + L + G + E RV L + E Sbjct: 59 NRWRFLQQTLHDLDQQLQKLGSRLFVVRGKP----AEVFPRIFKSWRVELLTFETDIEPY 114 Query: 116 EVRRDKLLEKRLQ-HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADL 174 + RD ++K + V ++ + P ++ L + +++ L + Sbjct: 115 SLARDSAVQKLAKSDGVKVETHCSHTIYNPELVIAKNLGKAPITYQKFLGIVEKLKLPTV 174 Query: 175 RSLPVPAIRLTGPVTPS------------NIPRFFDYPFQAIDPMFPIGEQNALHILRKF 222 LP P + + P FP GE AL + + Sbjct: 175 LDLPEKLKEKVQPPKDDIEEKDSEAYDCPTMEQLVKRPEDLGPLKFPGGETEALRRMEES 234 Query: 223 CKEKVY--YYVEQRDIPA--IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGA 278 K++++ + + P T+ LSPYL G LS R RLKE + K Sbjct: 235 LKDELWVARFEKPNTAPNSLEPSTTVLSPYLKFGCLSSRLFHQRLKE-ILKRQTKHSQPP 293 Query: 279 FSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDA 338 S + +++WREFY + A P+ + +I W + L+AW G TG+P IDA Sbjct: 294 VSLIGQMMWREFYYTVAAAEPNFDRMLG-NVYCLQIPWEEHPDHLKAWTYGQTGYPFIDA 352 Query: 339 AMRQLNTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAAS 397 MRQL GW+H+ R A FL + DL + W G+ F LLD D A N G W W S Sbjct: 353 IMRQLRQEGWIHHLARHAVACFLTRGDLWISWEEGQRVFEQLLLDQDWALNAGNWMW-LS 411 Query: 398 TGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND------ 451 YFR+++P GK+ DPQG +IR ++PEL P I+ P + Sbjct: 412 ASAFFHQYFRVYSPVAFGKKTDPQGNYIRKYVPELAKYPAGCIYEPWKASLSDQRAYGCV 471 Query: 452 LSLNYPLPIVDHKKACHHTLNQYYAAKK 479 L +YP IV H+ + + AA K Sbjct: 472 LGTDYPHRIVKHEVVHKENIKRMGAAYK 499 >gi|261278633|pdb|3CVW|A Chain A, Drosophila Melanogaster (6-4) Photolyase H365n Mutant Bound To Ds Dna With A T-T (6-4) Photolesion And Cofactor F0 Length = 543 Score = 345 bits (884), Expect = 1e-92, Method: Composition-based stats. Identities = 129/505 (25%), Positives = 200/505 (39%), Gaps = 36/505 (7%) Query: 4 TTAMSVHLVWLRNDLRITDNKALYA---ACHNSDAK--VIAVFIATPEQWRQHGISARQS 58 + S + W R LR+ DN AL A + + + V +FI P + A + Sbjct: 25 DSQRSTLVHWFRKGLRLHDNPALSHIFTAANAAPGRYFVRPIFILDPGILDWMQVGANRW 84 Query: 59 HFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVR 118 F+ +L + L + + E RV L + E V Sbjct: 85 RFLQQTLEDLDNQLRKLNSRLFVVRGKP----AEVFPRIFKSWRVEMLTFETDIEPYSVT 140 Query: 119 RDKLLEKRLQ-HRVICKSFDDSVLLPPGSILNHA------------LQMYKVYTPFRKAL 165 RD ++K + V ++ + P ++ + ++ P + Sbjct: 141 RDAAVQKLAKAEGVRVETHCSHTIYNPELVIAKNLGKAPITYQKFLGIVEQLKVPKVLGV 200 Query: 166 IQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKE 225 + L + + + + P + FP GE AL + + K+ Sbjct: 201 PEKLKNMPTPPKDEVEQKDSAAYDCPTMKQLVKRPEELGPNKFPGGETEALRRMEESLKD 260 Query: 226 KVY--YYVEQRDIPA--IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSW 281 +++ + + P T+ LSPYL G LS R +LKE + K S Sbjct: 261 EIWVARFEKPNTAPNSLEPSTTVLSPYLKFGCLSARLFNQKLKE-IIKRQPKHSQPPVSL 319 Query: 282 LNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMR 341 + +L+WREFY + A P+ + +I W + L+AW G TG+P IDA MR Sbjct: 320 IGQLMWREFYYTVAAAEPNFDRMLG-NVYCMQIPWQEHPDHLEAWTHGRTGYPFIDAIMR 378 Query: 342 QLNTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGN 400 QL GW+HN R A FL + DL + W G+ F LLD D A N G W W S Sbjct: 379 QLRQEGWIHNLARHAVACFLTRGDLWISWEEGQRVFEQLLLDQDWALNAGNWMW-LSASA 437 Query: 401 DSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSW------LDKNDLSL 454 YFR+++P GK+ DPQG +IR ++PEL+ P I+ P L Sbjct: 438 FFHQYFRVYSPVAFGKKTDPQGHYIRKYVPELSKYPAGCIYEPWKASLVDQRAYGCVLGT 497 Query: 455 NYPLPIVDHKKACHHTLNQYYAAKK 479 +YP IV H+ + + AA K Sbjct: 498 DYPHRIVKHEVVHKENIKRMGAAYK 522 >gi|147906624|ref|NP_001081421.1| 6-4 photolyase [Xenopus laevis] gi|8809676|dbj|BAA97126.1| 6-4 photolyase [Xenopus laevis] gi|213625040|gb|AAI69683.1| 6-4 photolyase [Xenopus laevis] gi|213627768|gb|AAI69685.1| 6-4 photolyase [Xenopus laevis] Length = 526 Score = 345 bits (884), Expect = 1e-92, Method: Composition-based stats. Identities = 124/494 (25%), Positives = 202/494 (40%), Gaps = 32/494 (6%) Query: 10 HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69 + W R LR+ DN AL AA + A++ +FI P + +S + F+ +L + Sbjct: 5 SIHWFRKGLRLHDNPALLAAMKDC-AELHPIFILDPWFPKNMQVSVNRWRFLIDALKDLD 63 Query: 70 KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK-RLQ 128 ++L + + E + +VT+L + E +RD +EK + Sbjct: 64 ENLKKINSRLFVVRGKP----AEVFPLLFKKWKVTRLTFEVDIEPYSRQRDAEVEKLAAE 119 Query: 129 HRVICKSFDDSVLLPPGSIL-NHALQMYKVYTPFRKALIQNLVQADLRSLP-------VP 180 H V + L I+ + + Y F+ L P Sbjct: 120 HDVQVIQKVSNTLYDIDRIIAENNGKPPLTYVRFQTVLAPLGPPKRPIKAPTLENMKDCH 179 Query: 181 AIRLTGPVTPSNIPRFFDYPFQAIDP---MFPIGEQNALHILRKFCKEKVY--YYVEQRD 235 + +P + + ++P GE AL L K + + + Sbjct: 180 TPWKSSYDEKYGVPTLEELGQDPMKLGPHLYPGGESEALSRLDLHMKRTSWVCNFKKPET 239 Query: 236 IPA--IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRH 293 P T+ LSPY+ G LS R W ++ + + K S +L+WREFY Sbjct: 240 EPNSLTPSTTVLSPYVKFGCLSARTFWWKIADIYQGK--KHSDPPVSLHGQLLWREFYYT 297 Query: 294 LMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRL 353 A P+ + P +++W+ + L+AW +G TG+P IDA M QL T GW+H+ Sbjct: 298 TGAGIPNFNKMEG-NPVCVQVDWDNNKEHLEAWSEGRTGYPFIDAIMTQLRTEGWIHHLA 356 Query: 354 RMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPT 412 R A FL + DL + W G++ F LLD D + N G W W S +FR+++P Sbjct: 357 RHAVACFLTRGDLWISWEEGQKVFEELLLDADWSLNAGNWLW-LSASAFFHQFFRVYSPV 415 Query: 413 IQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDK------NDLSLNYPLPIVDHKKA 466 GK+ D G +I+ +LP L P +YI+ P + +YP PIV+H Sbjct: 416 AFGKKTDKNGDYIKKYLPILKKFPAEYIYEPWKSPRSLQERAGCIIGKDYPKPIVEHNVV 475 Query: 467 CHHTLNQYYAAKKQ 480 + + AA + Sbjct: 476 SKQNIQRMKAAYAR 489 >gi|225875100|emb|CAQ86665.1| cryptochrome [Euphausia superba] Length = 545 Score = 345 bits (884), Expect = 1e-92, Method: Composition-based stats. Identities = 127/493 (25%), Positives = 192/493 (38%), Gaps = 32/493 (6%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 + W R LR+ DN L A + +FI P + + F+ L + Sbjct: 10 VHWFRKGLRLHDNPTLKAGLKGA-TTFRGIFIIDPWFAGSSNVGINKWRFLLQCLEDLDT 68 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130 +L + + L T L + + E RD + + Sbjct: 69 TLRKLNGRLFVVRG----QPAHVLPQLFKTWGTTCLTFEKDPEPFGKVRDANITHIAREM 124 Query: 131 VICKSFD-DSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189 I L I++ + + ++ + L + PV + T Sbjct: 125 GIQVIIKTSHTLYKLEKIISKNGGKLPLTYKTFQNVLSTMEPPPLPASPVTVRDVGDAFT 184 Query: 190 PSN--------IPRFFDYPFQAID---PMFPIGEQNALHILRKFCKEKVYYYVEQRDI-- 236 P + +P + F+ + ++ GE AL L + K + R Sbjct: 185 PIDEDHDEKYGVPTLEELGFETENLAPSIWKGGESEALARLEHHLERKAWVASFGRPKMT 244 Query: 237 PAIQGTSQ--LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHL 294 P S+ LSPYL G LS R+ + L + + IK S +L+WREFY Sbjct: 245 PQSLYPSRTGLSPYLRFGCLSARRFFAELNDLYRK--IKKSPAPLSLHGQLLWREFYYTA 302 Query: 295 MAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLR 354 P + P +I W+K++ L W G TGFP IDA M QL GW+HN R Sbjct: 303 ATNNPKFDHMEG-NPICVQIPWDKNAEALAKWAHGRTGFPWIDAIMSQLRKEGWIHNVAR 361 Query: 355 MITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTI 413 A FL + DL V W G + F LLD D + N G W W S + +F + P Sbjct: 362 HAVACFLTRGDLWVSWEEGMKVFDELLLDADWSVNAGSWMW-LSCSSFFQQFFHCYCPVR 420 Query: 414 QGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLD------KNDLSLNYPLPIVDHKKAC 467 G++ DP G +IR +LP L N PT+YIH P + + K + +YP+P+VDH K Sbjct: 421 YGRKADPNGDYIRTYLPVLKNFPTKYIHEPWTAPENVQKQSKCVIGRDYPMPMVDHVKQS 480 Query: 468 HHTLNQYYAAKKQ 480 L + +Q Sbjct: 481 QANLMRMKQVYQQ 493 >gi|296536181|ref|ZP_06898305.1| deoxyribodipyrimidine photo-lyase [Roseomonas cervicalis ATCC 49957] gi|296263491|gb|EFH09992.1| deoxyribodipyrimidine photo-lyase [Roseomonas cervicalis ATCC 49957] Length = 477 Score = 345 bits (884), Expect = 1e-92, Method: Composition-based stats. Identities = 155/476 (32%), Positives = 224/476 (47%), Gaps = 30/476 (6%) Query: 8 SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67 L+WLR DLR D+ AL+A V+ VF+ G +AR +++ SL Sbjct: 6 PPALLWLRQDLRTADHPALHAVA---GQPVLPVFVLDESDPWAPGGAAR--WWLHHSL-- 58 Query: 68 VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127 K+L +K + + + ++ +R YE +RD + K L Sbjct: 59 --KALGEKLAALGAPLLLLRGKAADLIPELADALGAAEVHASRLYEPWARQRDAGIAKAL 116 Query: 128 QHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQ-------NLVQADLRSLPV 179 + + + LL P + + Y VYTPF +A++ LR+ P Sbjct: 117 EGQGRRLCLHSGATLLEPHRLRTGQGKPYSVYTPFARAVLALGDPPPPIPAPDRLRAAPP 176 Query: 180 PAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAI 239 P L A + GE A LR F + Y RD+P Sbjct: 177 PREGLALDALDLLPRPPEPDWAAAFPEYWTPGEDGAAARLRDFAAQAAQGYDRGRDLPGE 236 Query: 240 QGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYP 299 T++LSP+L G +SPRQ W + E G +WL E++WREF H + P Sbjct: 237 DRTARLSPHLHWGEVSPRQAWQAVAE------GGKSGGHITWLKEILWREFAYHTLWHRP 290 Query: 300 SVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITAS 359 + P P + W D LLQAW++G TG+PI+DA +RQL GWMHNR+RM+ S Sbjct: 291 ELP-DTPLRPEFAEFPWQPDDTLLQAWQRGRTGYPIVDAGLRQLWRHGWMHNRVRMVVGS 349 Query: 360 FLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFD 419 LVK LL W+ G +F L+D DLA+N+ WQW A +G D+ PYFRIFNP +QG++FD Sbjct: 350 LLVKHLLQPWQQGSLWFWDTLVDADLAANSMNWQWVAGSGIDASPYFRIFNPILQGEKFD 409 Query: 420 PQGTFIRHWLPELNNVPTQYIHAPHSW------LDKNDLSLNYPLPIVDHKKACHH 469 P+G ++RH++PEL +P ++H P L +YP PIVDH+ Sbjct: 410 PEGRYVRHFVPELARLPDAWLHKPWQASPEMLRAAGLRLGHDYPAPIVDHEGGRKR 465 >gi|19528415|gb|AAL90322.1| RE11660p [Drosophila melanogaster] Length = 540 Score = 344 bits (883), Expect = 2e-92, Method: Composition-based stats. Identities = 128/505 (25%), Positives = 200/505 (39%), Gaps = 36/505 (7%) Query: 4 TTAMSVHLVWLRNDLRITDNKALYA---ACHNSDAK--VIAVFIATPEQWRQHGISARQS 58 + S + W R LR+ DN AL A + + + V +FI P + A + Sbjct: 2 DSQRSTLVHWFRKGLRLHDNPALSHIFTAANAAPGRYFVRPIFILDPGILDWMQVGANRW 61 Query: 59 HFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVR 118 F+ +L + L + + E RV L + E V Sbjct: 62 RFLQQTLEDLDNQLRKLNSRLFVVRGKP----AEVFPRIFKSWRVEMLTFETDIEPYSVT 117 Query: 119 RDKLLEKRLQ-HRVICKSFDDSVLLPPGSILNHA------------LQMYKVYTPFRKAL 165 RD ++K + V ++ + P ++ + ++ P + Sbjct: 118 RDAAVQKLAKAEGVRVETHCSHTIYNPELVIAKNLGKAPITYQKFLGIVEQLKVPKVLGV 177 Query: 166 IQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKE 225 + L + + + + P + FP GE AL + + K+ Sbjct: 178 PEKLKNMPTPPKDEVEQKDSAAYDCPTMKQLVKRPEELGPNKFPGGETEALRRMEESLKD 237 Query: 226 KVY--YYVEQRDIPA--IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSW 281 +++ + + P T+ LSPYL G LS R +LKE + K S Sbjct: 238 EIWVARFEKPNTAPNSLEPSTTVLSPYLKFGCLSARLFNQKLKE-IIKRQPKHSQPPVSL 296 Query: 282 LNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMR 341 + +L+WREFY + A P+ + +I W + L+AW G TG+P IDA MR Sbjct: 297 IGQLMWREFYYTVAAAEPNFDRMLG-NVYCMQIPWQEHPDHLEAWTHGRTGYPFIDAIMR 355 Query: 342 QLNTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGN 400 QL GW+H+ R A FL + DL + W G+ F LLD D A N G W W S Sbjct: 356 QLRQEGWIHHLARHAVACFLTRGDLWISWEEGQRVFEQLLLDQDWALNAGNWMW-LSASA 414 Query: 401 DSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSW------LDKNDLSL 454 YFR+++P GK+ DPQG +IR ++PEL+ P I+ P L Sbjct: 415 FFHQYFRVYSPVAFGKKTDPQGHYIRKYVPELSKYPAGCIYEPWKASLVDQRAYGCVLGT 474 Query: 455 NYPLPIVDHKKACHHTLNQYYAAKK 479 +YP IV H+ + + AA K Sbjct: 475 DYPHRIVKHEVVHKENIKRMGAAYK 499 >gi|254525755|ref|ZP_05137807.1| deoxyribodipyrimidine photolyase [Prochlorococcus marinus str. MIT 9202] gi|221537179|gb|EEE39632.1| deoxyribodipyrimidine photolyase [Prochlorococcus marinus str. MIT 9202] Length = 478 Score = 344 bits (883), Expect = 2e-92, Method: Composition-based stats. Identities = 163/484 (33%), Positives = 234/484 (48%), Gaps = 29/484 (5%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISAR-QSHFIYASLLQVQ 69 L W R DLRI DN+AL A S+A + + +I H +A ++ F+ SL ++ Sbjct: 7 LFWHRKDLRIFDNQALNKAISLSNA-ITSTYIFDENY--SHDFNANSRAWFLGNSLQELG 63 Query: 70 KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD-KLLEKRLQ 128 + + G + D I + +F+N+ E E+ RD K+ +K + Sbjct: 64 NNWHRMGSRLVIEKG----DPILIIPKLAKIIDAKFVFWNKSIEPYEINRDSKIKKKLKE 119 Query: 129 HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLV------------QADLRS 176 + D +L+ P I + + Y VY PF K L + Q Sbjct: 120 KNIQFIESWDHLLVEPSKIFSGNNKPYSVYGPFYKNLKSKMKFLGSYNQDKVICQFKDID 179 Query: 177 LPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFP-IGEQNALHILRKFCKEK-VYYYVEQR 234 + ++ + F + GE A +L+ F EK +Y Y R Sbjct: 180 NKLKENKIINSSDSVLNKFLKNIKFSGSNICPCRPGEVAAETLLKNFINEKKIYSYNSVR 239 Query: 235 DIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKS-GAFSWLNELIWREFYRH 293 D+P+ GTS LS L G +S R+ WN D S +W EL+WREFY+H Sbjct: 240 DLPSHIGTSFLSASLRFGTISIRKVWNATLNLNSDFESHENSLSIETWQKELVWREFYQH 299 Query: 294 LMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRL 353 + +P + G PF ++ W ++ Q W +G TG PI+DAAMRQLN+ GWMHNR Sbjct: 300 CLFHFPELEQG-PFRKKWDQFPWINNNEWFQHWSKGETGVPIVDAAMRQLNSTGWMHNRC 358 Query: 354 RMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTI 413 RMI ASFLVKDL+ +W++GE+ FM L+DGDLA+NNGGWQW+AS+G D P RIFNP Sbjct: 359 RMIVASFLVKDLICNWQMGEKKFMETLVDGDLAANNGGWQWSASSGMDPKP-LRIFNPYT 417 Query: 414 QGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQ 473 Q K+FDP +I+ W+PEL+ V I +N+ NY PIV+H + Sbjct: 418 QAKKFDPICEYIKSWIPELSKVSNSDILNGEISNLENN---NYSKPIVNHNIQQRLFKSL 474 Query: 474 YYAA 477 Y Sbjct: 475 YAEI 478 >gi|195433475|ref|XP_002064736.1| GK15094 [Drosophila willistoni] gi|194160821|gb|EDW75722.1| GK15094 [Drosophila willistoni] Length = 546 Score = 344 bits (883), Expect = 2e-92, Method: Composition-based stats. Identities = 136/508 (26%), Positives = 204/508 (40%), Gaps = 37/508 (7%) Query: 1 MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAK-----VIAVFIATPEQWRQHGISA 55 M+A T ++ + W R LR+ DN AL + A V +FI P + A Sbjct: 1 MEAKTKATL-IHWFRKGLRVHDNPALMQIFTTAQAAPKKFYVRPIFILDPGILDWMQVGA 59 Query: 56 RQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEIN 115 + F+ +L + K L Q + IE V L + E Sbjct: 60 NRWRFLQQTLDDLDKQLRQLNSRLYVVRGKP----IEVFPRLFKSWNVELLTFESDIEPY 115 Query: 116 EVRRDKLLEKRLQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADL 174 RD ++K + I ++ + P ++ L + AL++ L A + Sbjct: 116 AQTRDAAVQKIAKAAGIKVETHCSHTIYNPELVIAKNLGKAPITYQKFLALVEKLKLAKV 175 Query: 175 RSLPVPAIRLTGPVTPS------------NIPRFFDYPFQAIDPMFPIGEQNALHILRKF 222 P LT P + + P + +FP GE L + Sbjct: 176 LDKPEKLDALTQPSRDELEQENDKVYDCPSQEQLVKKPNELGPNIFPGGETEGLRRMEDS 235 Query: 223 CKEKVY--YYVEQRDIPA--IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGA 278 ++++ + + P T+ LSPYL G LS R + RLKE K Sbjct: 236 LNDELWVARFEKPNTAPNSLEPSTTVLSPYLKFGCLSSRLFYQRLKEILAK-HPKHSQPP 294 Query: 279 FSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDA 338 S + +++WREFY + A P+ + +I W + L+AW G TG+P IDA Sbjct: 295 VSLVGQVLWREFYYTVAAAEPNFDRMLG-NVYCLQIPWQEHPEHLEAWTYGRTGYPFIDA 353 Query: 339 AMRQLNTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAAS 397 MRQL GW+H+ R A FL + DL + W G+ F LLD D A N G W W S Sbjct: 354 IMRQLRQEGWIHHLARHAVACFLTRGDLWISWEEGQRVFEQLLLDQDWALNAGNWMW-LS 412 Query: 398 TGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND------ 451 YFR+++P GK+ DPQG +IR + PEL N P + I+ P + Sbjct: 413 ASAFFHQYFRVYSPVAFGKKTDPQGNYIRKYCPELANYPNKQIYEPWLATLQAQREYGCV 472 Query: 452 LSLNYPLPIVDHKKACHHTLNQYYAAKK 479 L +YP IV H+ + + A K Sbjct: 473 LGEDYPHRIVKHELVHKENIKKMSEAYK 500 >gi|308803621|ref|XP_003079123.1| cryptochrome-like protein 1 (ISS) [Ostreococcus tauri] gi|116057578|emb|CAL53781.1| cryptochrome-like protein 1 (ISS) [Ostreococcus tauri] Length = 1646 Score = 344 bits (883), Expect = 2e-92, Method: Composition-based stats. Identities = 137/549 (24%), Positives = 200/549 (36%), Gaps = 76/549 (13%) Query: 2 KATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFI 61 + A LVW R LR+ DN AL ++ A VF+ P + + A + F+ Sbjct: 1093 TSAAAKGRTLVWFRKALRVHDNPALSRGTLHATA-CQPVFVLDPWFCQPSRVGANRMRFL 1151 Query: 62 YASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDK 121 SL + L +G L C + RV + + E RD Sbjct: 1152 LQSLRDLDAQLRARGSSLLVLHGEPRV----VLPRACKKWRVDSVTWEHDIEPYAKIRDA 1207 Query: 122 LLEKRLQ-HRVICKSFDDSVLLPPGSILNH-ALQMYKVYTPFRKALIQNLVQADLRSLPV 179 + L+ V C + L +L Y F K + + Sbjct: 1208 AVRGALERAGVECHAASGHTLYDVDEMLEKCKGAPPTTYQGFFKIVDKMGAPNAPIDAME 1267 Query: 180 P------------AIRLTGPVTPSNIPRFFDYPFQAI--DPMFPI--GEQNALH------ 217 + G IP D ++ + D FP GE L Sbjct: 1268 KMPGSFASSDEETKALVQGVADAYGIPTLEDLGYEPLGDDEGFPGVGGETEGLRRLRLML 1327 Query: 218 -------ILRKFCKEKVYYY-----------------VEQRDIPAIQGTSQ--------- 244 K + R TS Sbjct: 1328 ARKEWIGQFEKPSTNPTTRFHGLSQSGKTKPKSPFEIAAGRSKDGDASTSGAEALMIPST 1387 Query: 245 --LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVC 302 LSPY+ G +SPR ++ L + +L K S + +L+WREFY + A + Sbjct: 1388 TALSPYMKFGCVSPRVFYHELTAVYKELEGKHSKPPTSLMGQLMWREFYYLVAAGTKNFD 1447 Query: 303 MGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLV 362 + +I W KD L AW+ TGFP IDAAM QL GW+H+ R A FL Sbjct: 1448 KMEG-NAICRQIPWKKDRELFAAWENAQTGFPWIDAAMTQLRREGWLHHLARHAVACFLT 1506 Query: 363 K-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQ 421 + DL + W G + F L+D D A NNG W W S YFR+++P K++D Sbjct: 1507 RGDLFIHWEWGRDAFDRDLVDADWALNNGNWMW-LSCSAFFYQYFRVYSPIAFAKKYDKD 1565 Query: 422 GTFIRHWLPELNNVPTQYIHAPHSWL------DKNDLSLNYPLPIVDHKKACHHT---LN 472 G ++RH+LP L N+P++Y++ P + ++YP PIVDH A + Sbjct: 1566 GQYVRHYLPVLKNMPSKYVYEPWLAPLDVQKKAGCVVGVDYPAPIVDHSAASKRCVDDIA 1625 Query: 473 QYYAAKKQS 481 YAA K + Sbjct: 1626 TAYAAHKDA 1634 >gi|261278636|pdb|3CVX|A Chain A, Drosophila Melanogaster (6-4) Photolyase H369m Mutant Bound To Ds Dna With A T-T (6-4) Photolesion Length = 543 Score = 344 bits (883), Expect = 2e-92, Method: Composition-based stats. Identities = 129/505 (25%), Positives = 201/505 (39%), Gaps = 36/505 (7%) Query: 4 TTAMSVHLVWLRNDLRITDNKALYA---ACHNSDAK--VIAVFIATPEQWRQHGISARQS 58 + S + W R LR+ DN AL A + + + V +FI P + A + Sbjct: 25 DSQRSTLVHWFRKGLRLHDNPALSHIFTAANAAPGRYFVRPIFILDPGILDWMQVGANRW 84 Query: 59 HFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVR 118 F+ +L + L + + E RV L + E V Sbjct: 85 RFLQQTLEDLDNQLRKLNSRLFVVRGKP----AEVFPRIFKSWRVEMLTFETDIEPYSVT 140 Query: 119 RDKLLEKRLQ-HRVICKSFDDSVLLPPGSILNHA------------LQMYKVYTPFRKAL 165 RD ++K + V ++ + P ++ + ++ P + Sbjct: 141 RDAAVQKLAKAEGVRVETHCSHTIYNPELVIAKNLGKAPITYQKFLGIVEQLKVPKVLGV 200 Query: 166 IQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKE 225 + L + + + + P + FP GE AL + + K+ Sbjct: 201 PEKLKNMPTPPKDEVEQKDSAAYDCPTMKQLVKRPEELGPNKFPGGETEALRRMEESLKD 260 Query: 226 KVY--YYVEQRDIPA--IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSW 281 +++ + + P T+ LSPYL G LS R +LKE + K S Sbjct: 261 EIWVARFEKPNTAPNSLEPSTTVLSPYLKFGCLSARLFNQKLKE-IIKRQPKHSQPPVSL 319 Query: 282 LNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMR 341 + +L+WREFY + A P+ + +I W + L+AW G TG+P IDA MR Sbjct: 320 IGQLMWREFYYTVAAAEPNFDRMLG-NVYCMQIPWQEHPDHLEAWTHGRTGYPFIDAIMR 378 Query: 342 QLNTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGN 400 QL GW+H+ RM A FL + DL + W G+ F LLD D A N G W W S Sbjct: 379 QLRQEGWIHHLARMAVACFLTRGDLWISWEEGQRVFEQLLLDQDWALNAGNWMW-LSASA 437 Query: 401 DSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSW------LDKNDLSL 454 YFR+++P GK+ DPQG +IR ++PEL+ P I+ P L Sbjct: 438 FFHQYFRVYSPVAFGKKTDPQGHYIRKYVPELSKYPAGCIYEPWKASLVDQRAYGCVLGT 497 Query: 455 NYPLPIVDHKKACHHTLNQYYAAKK 479 +YP IV H+ + + AA K Sbjct: 498 DYPHRIVKHEVVHKENIKRMGAAYK 522 >gi|259506660|ref|ZP_05749562.1| deoxyribodipyrimidine photolyase [Corynebacterium efficiens YS-314] gi|259165744|gb|EEW50298.1| deoxyribodipyrimidine photolyase [Corynebacterium efficiens YS-314] Length = 476 Score = 344 bits (883), Expect = 2e-92, Method: Composition-based stats. Identities = 163/507 (32%), Positives = 222/507 (43%), Gaps = 60/507 (11%) Query: 1 MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHF 60 M +TA S +VW R+DLRI DN AL A VI +FI +Q R G +AR Sbjct: 1 MSLSTA-SPTIVWFRDDLRIRDNAALAWAADRG--PVIGLFI-DEDQPRALGGAARWWR- 55 Query: 61 IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120 SL + +L+ G+ D + L + + +NR+Y RD Sbjct: 56 -DRSLTLLVDALATHGVPLLRRSG----DPVVLLTEVVRETGAAAVTWNRRYHGPLRERD 110 Query: 121 KLLEKRLQHRV-ICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPV 179 ++ +L+ + S +L P + + A YKVYTPF KA ++ R Sbjct: 111 AEIKTQLREQGLEVHSHAGFLLTEPWEVTSGAGTGYKVYTPFSKAAFPLADESAARLGDP 170 Query: 180 PAIRLTGPVTPSNIPRFFDYP----FQAIDPMFPIGEQNALHILRKFCKEKVY--YYVEQ 233 +LTGP TP D P + GEQ AL L F Y + Sbjct: 171 MPAQLTGPDTPVADTGGIDAPDPFWAAEMATHCRPGEQAALDRLGDFLDRMRERGGYADG 230 Query: 234 RDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRH 293 RD A TS LSP+L G +S + W + + A + EL+WR+F H Sbjct: 231 RDEMARAVTSGLSPHLRFGEISVHRVWEEITAAAD-AGDIDATDAQVFRKELLWRDFAWH 289 Query: 294 LMAFYPSVCMGKPFIPWTEKIEWNKDSH----------------------LLQAWKQGYT 331 + P + + W D H L AW+ G T Sbjct: 290 RLYALPDMATTN-VREQFNRFGWAWDEHEAARLVDGRHPLSPTSSDEFHVALAAWRAGRT 348 Query: 332 GFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGG 391 G P++DA MR+L G MHNR RM+ ASFL K+L + WR GEE+F L+D D ASN Sbjct: 349 GIPLVDAGMRELWATGSMHNRSRMVVASFLTKNLQIHWRHGEEWFWETLVDADPASNAFN 408 Query: 392 WQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND 451 WQWAA +G+D+ PYFRIFNP Q ++FDP T+IR W+PE Sbjct: 409 WQWAAGSGDDASPYFRIFNPETQARKFDPDETYIRRWIPEYG------------------ 450 Query: 452 LSLNYPLPIVDHKKACHHTLNQYYAAK 478 + YP PIVD K++ L+ Y A K Sbjct: 451 -TPEYPAPIVDLKESRREALDAYEAVK 476 >gi|332557576|ref|ZP_08411898.1| deoxyribodipyrimidine photo-lyase [Rhodobacter sphaeroides WS8N] gi|332275288|gb|EGJ20603.1| deoxyribodipyrimidine photo-lyase [Rhodobacter sphaeroides WS8N] Length = 471 Score = 344 bits (882), Expect = 2e-92, Method: Composition-based stats. Identities = 140/474 (29%), Positives = 216/474 (45%), Gaps = 25/474 (5%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 ++W R DLR+ DN L A +I +FI PE + A + + + Sbjct: 8 ILWFRRDLRLADNPMLAEAAATG-RPLIPLFILDPE---TEALGAAPKWRLGLGVEAFAR 63 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130 +L G + ++ L++ + + ++R +E RD+ ++ L+ Sbjct: 64 ALEGLGSRLVLRRGP----ALAVLEALVAETGAAGVHWSRLWEPAWRARDEGVKAGLRQA 119 Query: 131 VI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQ---ADLRSLPVPA-IRLT 185 I S + P + Y+VYTPF KA+ V LP PA ++ Sbjct: 120 GIEAASHAGHTIFEPWEVETGQGGFYRVYTPFWKAVKDRPVAASFPPPARLPSPAEWPVS 179 Query: 186 GPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245 + ++ R + + P +GE A L +F + Y +RD P TS+L Sbjct: 180 ERLASWDLGRAMNRGAAVVAPHLAVGEAAAAERLTRFMSGPLDRYAAERDRPDAPVTSRL 239 Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305 S L+ G +S R W+ + ++GA +L EL WREF HL+ P + + Sbjct: 240 SENLTYGEISARSLWHAGMR----ARAEGRAGAEKFLQELAWREFGWHLLYHTPEIAR-R 294 Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365 + + W D+ + W++G TG P +DAAMR+L G MHNR R+I S+L K L Sbjct: 295 NWRGDWDAFPWRGDNPDAERWRRGMTGEPFVDAAMRELFVTGTMHNRARLIAGSYLTKHL 354 Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425 L DWR+G+ +F L+D D ASN GWQW A +G D+ PYFRIFNP Q ++FDP+ + Sbjct: 355 LTDWRVGKAWFEDCLIDWDPASNALGWQWVAGSGPDASPYFRIFNPATQAEKFDPESAYR 414 Query: 426 RHWLPELNNVPTQYIHA-----PHSWLDKNDLSLNYPLPIVDHKKACHHTLNQY 474 + +L E+ P A P SW + D YP P+V + L Y Sbjct: 415 QRFLAEIARRPGPEALAFLEAVPRSWGLRPDRC--YPRPVVGLAEGRERALAAY 466 >gi|195351886|ref|XP_002042448.1| GM23319 [Drosophila sechellia] gi|194124317|gb|EDW46360.1| GM23319 [Drosophila sechellia] Length = 540 Score = 344 bits (882), Expect = 2e-92, Method: Composition-based stats. Identities = 132/508 (25%), Positives = 204/508 (40%), Gaps = 38/508 (7%) Query: 1 MKATTAMSVHLVWLRNDLRITDNKALYA---ACHNSDAK--VIAVFIATPEQWRQHGISA 55 M A + VH W R LR+ DN AL A + + K V +FI P + A Sbjct: 1 MDAQRSTLVH--WFRKGLRVHDNPALSHIFTAANAAPGKYFVRPIFILDPGILDWMQVGA 58 Query: 56 RQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEIN 115 + F+ +L + L + + E RV L + E Sbjct: 59 NRWRFLQQTLEDLDNQLRKLDSRLFVVRGKP----AEVFPRIFKSWRVEMLTFETDIEPY 114 Query: 116 EVRRDKLLEKRLQ-HRVICKSFDDSVLLPPGSILNHA------------LQMYKVYTPFR 162 + RD ++K + V ++ + P ++ + ++ P Sbjct: 115 SLTRDAAVQKLAKAEGVKVETHCSHTIYNPELVIAKNLGKAPITYQKFLGIVDQLKVPKV 174 Query: 163 KALIQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKF 222 + + L + + + + + P + FP GE AL + + Sbjct: 175 LGVPEKLKKMPTPPKDEVEQKDSAAYDCPTMEQLVKRPEELGPNKFPGGETEALRRMEES 234 Query: 223 CKEKVY--YYVEQRDIPA--IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGA 278 K++++ + + P T+ LSPYL G LS R +LKE + K Sbjct: 235 LKDEIWVARFEKPNTAPNSLEPSTTVLSPYLKFGCLSARLFNQKLKE-IIKRQPKHSQPP 293 Query: 279 FSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDA 338 S + +L+WREFY + A P+ + +I W K L+AW G TG+P IDA Sbjct: 294 VSLIGQLMWREFYYTVAAAEPNFDRMLG-NVYCMQIPWQKHPDHLEAWTHGRTGYPFIDA 352 Query: 339 AMRQLNTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAAS 397 MRQL GW+H+ R A FL + DL + W G+ F LLD D A N G W W S Sbjct: 353 IMRQLRQEGWIHHLARHAVACFLTRGDLWISWEEGQRVFEQLLLDQDWALNAGNWMW-LS 411 Query: 398 TGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND------ 451 YFR+++P GK+ DPQG +IR ++PEL+ P I+ P + Sbjct: 412 ASAFFHQYFRVYSPVAFGKKTDPQGHYIRKYVPELSKYPAGCIYEPWKASLADQRAYGCV 471 Query: 452 LSLNYPLPIVDHKKACHHTLNQYYAAKK 479 L +YP IV H+ + + AA K Sbjct: 472 LGTDYPHRIVKHEVVHKENIKRMGAAYK 499 >gi|296448539|ref|ZP_06890415.1| Deoxyribodipyrimidine photo-lyase [Methylosinus trichosporium OB3b] gi|296253957|gb|EFH01108.1| Deoxyribodipyrimidine photo-lyase [Methylosinus trichosporium OB3b] Length = 477 Score = 344 bits (882), Expect = 2e-92, Method: Composition-based stats. Identities = 159/467 (34%), Positives = 237/467 (50%), Gaps = 33/467 (7%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 ++W R DLR+TD AA + A ++A+FI + G +AR +++ SL+ + Sbjct: 6 ILWFRRDLRLTD-NLALAAAATTGAPLVALFILDEDDDPPLGGAAR--WWLHHSLVSLTH 62 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH- 129 L ++G+ + S L + +F++R YE +RRD +E L+ Sbjct: 63 DLRERGLSLTLRRGP----SAASLTRLVPETGARAVFWSRVYEPAALRRDGEIETMLRAS 118 Query: 130 RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189 V +SF ++L PG I + + ++V+ PF +A + + P P + Sbjct: 119 GVEAQSFSGALLFEPGEIRSAQGRAFRVFAPFWRAAQAIVAPGAPKPAPTRLRAAPAPRS 178 Query: 190 PSNIPRFFDYPFQAIDP--------MFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQG 241 R D+ +P + GE A L F ++ V Y RD PA Sbjct: 179 E----RLEDWGLTPREPDWAGGLRDAWRPGESGARARLDAFVEDGVRDYAAARDFPAKDN 234 Query: 242 TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSV 301 S+LSP+L G + PRQ W + + P++ ++L EL WREF H++ +PS+ Sbjct: 235 VSRLSPHLHWGEIGPRQVWRAI-----EGADAPRADIAAFLRELGWREFCHHILLDHPSL 289 Query: 302 CMGKPFIPWTEKIEWNKDSH-LLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASF 360 P P + W +D L +AW +G TG+P +DA MRQL GWMHNRLRMI ASF Sbjct: 290 PEA-PLDPDFARFPWAQDDGTLFRAWARGATGYPFVDAGMRQLWLTGWMHNRLRMIVASF 348 Query: 361 LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDP 420 LVK LL+DWR GE +F L+D DL+SN WQWAA G D+ PYFRIFNP +QG+++D Sbjct: 349 LVKHLLLDWREGERWFFDTLVDADLSSNAFNWQWAAGCGADAAPYFRIFNPVLQGEKYDA 408 Query: 421 QGTFIRHWLPELNNVPTQYIHAPHSWLDKN------DLSLNYPLPIV 461 G F+R ++PEL + YIH P + ++ L YPL I+ Sbjct: 409 DGAFVRRFVPELARLDAHYIHRPWTAPEQKLREAGVRLGETYPLAII 455 >gi|330835507|ref|YP_004410235.1| deoxyribodipyrimidine photo-lyase type I [Metallosphaera cuprina Ar-4] gi|329567646|gb|AEB95751.1| deoxyribodipyrimidine photo-lyase type I [Metallosphaera cuprina Ar-4] Length = 433 Score = 343 bits (881), Expect = 3e-92, Method: Composition-based stats. Identities = 146/472 (30%), Positives = 227/472 (48%), Gaps = 46/472 (9%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQ-WRQHGISARQSHFIYASLLQ 67 + L R DLR+ DN L A D +V+ +FI P Q S F+ SLL+ Sbjct: 2 ICLFLFRRDLRLEDNTCLIKALRECD-EVVPLFIIDPRQVEDNPYKSPFAIGFMIDSLLE 60 Query: 68 VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127 + + L G + + + ++ N Y +RD+ +++++ Sbjct: 61 LDQDLKTMGSRLHLLKGFPEEIIPKI--------NADAVYMNEDYTPFSRQRDERIKEKV 112 Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187 + +++ +LL + Y V+T F ++ +R V ++ G Sbjct: 113 KGKLVTCE---DLLLTKKRFFLKEGKPYSVFTRFY----VDVKDKPVRRPEVNNLKNYGE 165 Query: 188 VTP-SNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246 + +++ + FQ F G + AL L + + Y R+ P + GT++LS Sbjct: 166 MKDITDVKLLENLHFQRSS--FKGGRRAALDTLNR---AQTIDYS-LRNFPGLPGTTRLS 219 Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP 306 PYL GVLSPR+ + + EE +L WR+F+ L + P V G Sbjct: 220 PYLKFGVLSPREVYYSVNEEIR--------------RQLYWRDFFTLLAYYNPYV-FGHA 264 Query: 307 FIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLL 366 + + + W D++L AW QG TG+PI+DA MR+LN G+MHNR RMITA FLVK L Sbjct: 265 YKREYDCVPWVNDTNLFSAWTQGKTGYPIVDAGMRELNNTGFMHNRTRMITAFFLVKVLH 324 Query: 367 VDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIR 426 VDWR GE+YF ++L+D D + NNG WQW ASTG D FRIFNP +Q K+FDP+ +I+ Sbjct: 325 VDWRWGEKYFATKLVDYDPSVNNGNWQWVASTGVDR--MFRIFNPWLQQKKFDPEAVYIK 382 Query: 427 HWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478 W+PEL ++ IH ++ YP PIV++ + Y ++ Sbjct: 383 EWVPELRDLSPADIHNVYALKV-----DGYPKPIVNYLEEVRKAREYYEKSR 429 >gi|211939158|pdb|3CVU|A Chain A, Drosophila Melanogaster (6-4) Photolyase Bound To Ds Dna With A T-T (6-4) Photolesion gi|211939161|pdb|3CVY|A Chain A, Drosophila Melanogaster (6-4) Photolyase Bound To Repaired Ds Dna gi|225697970|pdb|2WB2|A Chain A, Drosophila Melanogaster (6-4) Photolyase Bound To Double Stranded Dna Containing A T(6-4)c Photolesion gi|240104285|pdb|3CVV|A Chain A, Drosophila Melanogaster (6-4) Photolyase Bound To Ds Dna With A T-T (6-4) Photolesion And F0 Cofactor gi|289526487|pdb|2WQ6|A Chain A, Structure Of The 6-4 Photolyase Of D. Melanogaster In Complex With The Non-Natural N4-Methyl T(Dewar)c Lesion gi|289526490|pdb|2WQ7|A Chain A, Structure Of The 6-4 Photolyase Of D. Melanogaster In Complex With The Non-Natural N4-Methyl T(6-4)c Lesion Length = 543 Score = 343 bits (881), Expect = 3e-92, Method: Composition-based stats. Identities = 128/505 (25%), Positives = 200/505 (39%), Gaps = 36/505 (7%) Query: 4 TTAMSVHLVWLRNDLRITDNKALYA---ACHNSDAK--VIAVFIATPEQWRQHGISARQS 58 + S + W R LR+ DN AL A + + + V +FI P + A + Sbjct: 25 DSQRSTLVHWFRKGLRLHDNPALSHIFTAANAAPGRYFVRPIFILDPGILDWMQVGANRW 84 Query: 59 HFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVR 118 F+ +L + L + + E RV L + E V Sbjct: 85 RFLQQTLEDLDNQLRKLNSRLFVVRGKP----AEVFPRIFKSWRVEMLTFETDIEPYSVT 140 Query: 119 RDKLLEKRLQ-HRVICKSFDDSVLLPPGSILNHA------------LQMYKVYTPFRKAL 165 RD ++K + V ++ + P ++ + ++ P + Sbjct: 141 RDAAVQKLAKAEGVRVETHCSHTIYNPELVIAKNLGKAPITYQKFLGIVEQLKVPKVLGV 200 Query: 166 IQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKE 225 + L + + + + P + FP GE AL + + K+ Sbjct: 201 PEKLKNMPTPPKDEVEQKDSAAYDCPTMKQLVKRPEELGPNKFPGGETEALRRMEESLKD 260 Query: 226 KVY--YYVEQRDIPA--IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSW 281 +++ + + P T+ LSPYL G LS R +LKE + K S Sbjct: 261 EIWVARFEKPNTAPNSLEPSTTVLSPYLKFGCLSARLFNQKLKE-IIKRQPKHSQPPVSL 319 Query: 282 LNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMR 341 + +L+WREFY + A P+ + +I W + L+AW G TG+P IDA MR Sbjct: 320 IGQLMWREFYYTVAAAEPNFDRMLG-NVYCMQIPWQEHPDHLEAWTHGRTGYPFIDAIMR 378 Query: 342 QLNTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGN 400 QL GW+H+ R A FL + DL + W G+ F LLD D A N G W W S Sbjct: 379 QLRQEGWIHHLARHAVACFLTRGDLWISWEEGQRVFEQLLLDQDWALNAGNWMW-LSASA 437 Query: 401 DSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSW------LDKNDLSL 454 YFR+++P GK+ DPQG +IR ++PEL+ P I+ P L Sbjct: 438 FFHQYFRVYSPVAFGKKTDPQGHYIRKYVPELSKYPAGCIYEPWKASLVDQRAYGCVLGT 497 Query: 455 NYPLPIVDHKKACHHTLNQYYAAKK 479 +YP IV H+ + + AA K Sbjct: 498 DYPHRIVKHEVVHKENIKRMGAAYK 522 >gi|156393374|ref|XP_001636303.1| predicted protein [Nematostella vectensis] gi|156223405|gb|EDO44240.1| predicted protein [Nematostella vectensis] Length = 533 Score = 343 bits (881), Expect = 3e-92, Method: Composition-based stats. Identities = 121/500 (24%), Positives = 206/500 (41%), Gaps = 32/500 (6%) Query: 3 ATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIY 62 A+ + W RN LR+ DN AL A S V +++ P+ + I + FI Sbjct: 2 ASKKTHQTVHWFRNGLRLHDNPALKEAFETSQT-VRPLYVLDPDVLKNGNIGVVRWRFIL 60 Query: 63 ASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKL 122 SL + +L + + E + +++KL + ++D Sbjct: 61 ESLADLDNNLKKLNSRLFVVRGRPS----EVFPKLFKEWKISKLTFEVDTTEPARKQDAE 116 Query: 123 LEKRLQH-RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPA 181 + K V + L I+N + ++++ +L + Sbjct: 117 VLKIANKLGVDIEQRVSHTLYDLDRIVNKNGGTAPLTYKKFQSIVSSLGPPAAPLPAIDK 176 Query: 182 IRLTGPVTPSNIPRFF------------DYPFQAIDPMFPIGEQNALHILRKFCKEKVY- 228 + G TP+ + P ++ + ++P GE AL L + K++ + Sbjct: 177 KMVAGCNTPTTANHDKIYGVPTLEEIGQEVPEESREVLYPGGETEALERLEVYMKKEDWV 236 Query: 229 -YYVEQRDIPA--IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNEL 285 + + P T+ LSPY++ G LS R + RL E + K S +L Sbjct: 237 CKFEKPNTAPNSIEPSTTVLSPYMTYGCLSARLFYTRLAEIYAKKK-KHSQPPVSLHGQL 295 Query: 286 IWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNT 345 +WREF+ P+ ++ W+++ L AW + TG+P IDA M QL Sbjct: 296 LWREFFTTAAYKTPNFNKM-VGNSLCLQVPWDQNDEYLAAWAEARTGYPYIDAIMTQLRR 354 Query: 346 IGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVP 404 GW+H+ R A FL + DL + W G + F L+D D N G W W S + Sbjct: 355 EGWVHHLARHSVACFLTRGDLWISWEEGLKVFERLLIDHDWNLNAGNWMW-LSASSFFHA 413 Query: 405 YFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND------LSLNYPL 458 YFR+++P GK+ DP G +IR ++P+L+ P +YI+ P + + +YP Sbjct: 414 YFRVYSPVAFGKKTDPNGDYIRKYIPKLSRYPPKYIYEPWNAPLAVQEKAGCVIGRDYPC 473 Query: 459 PIVDHKKACHHTLNQYYAAK 478 PIVDH K +++ A+ Sbjct: 474 PIVDHNKVVTRNMSRMKEAR 493 >gi|254238599|ref|ZP_04931922.1| deoxyribodipyrimidine photolyase [Pseudomonas aeruginosa C3719] gi|126170530|gb|EAZ56041.1| deoxyribodipyrimidine photolyase [Pseudomonas aeruginosa C3719] Length = 394 Score = 343 bits (881), Expect = 3e-92, Method: Composition-based stats. Identities = 141/381 (37%), Positives = 208/381 (54%), Gaps = 6/381 (1%) Query: 5 TAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYAS 64 + ++L+W R DLR TDN AL AA +A+++ +P QWR+H + + F + Sbjct: 2 NGLPMNLIWFRCDLRTTDNSALLAAA--DGRPCVALYLLSPAQWREHDDAPCKVDFWLRN 59 Query: 65 LLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLE 124 L ++Q+ L+ I C ++ + E + C + V + N++Y +NE RRD+ + Sbjct: 60 LGELQRQLAALNIPLLVRDCGHWRQAPEVIGRLCRELGVGAVHVNQEYGVNEERRDQAVG 119 Query: 125 KRLQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADL---RSLPVP 180 +RL+ + + S D + PGS+L ++V++ FRK + L QA Sbjct: 120 QRLREQGVAFHSHLDQLFFAPGSVLTRTGGYFQVFSQFRKVCHERLYQALPGVRPRPQPQ 179 Query: 181 AIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ 240 + F P ++ ++P GE+ A LR F + + Y E+RD PA+ Sbjct: 180 PPHALASDPLPDAVPAFPRPADSLRRLWPAGEEVAQERLRDFADQHLADYHERRDFPALP 239 Query: 241 GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPS 300 GTSQLSPYL+ GVLSPRQC + + GA +W+NEL+WREFY+H++ YP Sbjct: 240 GTSQLSPYLAAGVLSPRQCLDAALVANRGEFSGGQQGAATWINELLWREFYKHILVGYPR 299 Query: 301 VCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASF 360 V +PF TE + W + L+AW+QG TG PIIDAAM QL GWMHNRLRM+ A F Sbjct: 300 VSRHRPFREETEALRWRQAPAELEAWQQGRTGIPIIDAAMSQLLATGWMHNRLRMVVAMF 359 Query: 361 LVKDLLVDWRIGEEYFMSQLL 381 L K+LL+DWR GE +FM L Sbjct: 360 LSKNLLIDWREGERWFMRHLN 380 >gi|299747808|ref|XP_002911220.1| photolyase [Coprinopsis cinerea okayama7#130] gi|298407687|gb|EFI27726.1| photolyase [Coprinopsis cinerea okayama7#130] Length = 633 Score = 343 bits (881), Expect = 3e-92, Method: Composition-based stats. Identities = 161/502 (32%), Positives = 246/502 (49%), Gaps = 67/502 (13%) Query: 1 MKATTAMS----VHLVWLR-NDLRITDNKALYAACHNS---DAKVIAVFIATPEQWRQHG 52 M+ T + + W+R DLR+ DN+AL A + ++A+F+ +P+ + H Sbjct: 57 MRNTVSTPLKSDCVVFWMRMTDLRVKDNRALARASQQAASDGVPLVALFVVSPQDFVAHD 116 Query: 53 ISARQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQY 112 S+R+ F +L+ ++ L++ I + + + +F N +Y Sbjct: 117 RSSRKIDFTLRNLVSIKCRLAELHIPLHVATLPRRKTVVSEVIIFLDSIGCNHVFANIEY 176 Query: 113 EINEVRRDKLLEKRLQH-RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALI----- 166 E++E+RRD L + + + + ++ PG I + + Y VY+P+ + + Sbjct: 177 EVDELRRDIELCSKAREISKQVSLYHNKSVVEPGIIQSKGGKGYAVYSPYARQWVSIVNS 236 Query: 167 ---QNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDY---------PFQAIDPMFPIGEQN 214 L +A + A+R + P + Y + ++P GE Sbjct: 237 HLSDYLEEAQDPAPNGAAVRSCPKIGPLFLSEIPSYVEGFVLDPEDSMIMRELWPEGEDA 296 Query: 215 ALHILRKFCK------------------------EKVYYYVEQRDIPAIQGTSQLSPYLS 250 A IL++F + ++ Y RD TS+LSPYLS Sbjct: 297 ASQILQRFLQTKARASQLEARGPLNEGVTYDVKHNRISKYHTDRDRADKDTTSRLSPYLS 356 Query: 251 IGVLSPRQCWNRLKEE--FVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFI 308 GV+S R+ + + L K+GA +++EL WR+FY ++A YP + MG+PF+ Sbjct: 357 SGVISIREVLRAILKVTGAQQLNTDSKTGAGRFISELAWRDFYTDVLASYPRISMGRPFL 416 Query: 309 PWTEKIEWNK---------------DSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRL 353 I W D+ L WK+G TG PI+DAAMR LN +GW+HNR+ Sbjct: 417 EKYSGIIWENHQAPANSKDPAGTEMDAEALFRWKRGTTGVPIVDAAMRCLNKMGWVHNRM 476 Query: 354 RMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTI 413 RMI A +L K L++DWR+GE YFM L+DGDLASNNGGWQW+ASTG D PYFRIFNP Sbjct: 477 RMIVAMYLTKHLMIDWRVGERYFMQTLVDGDLASNNGGWQWSASTGVDPCPYFRIFNPHT 536 Query: 414 QGKRFDPQGTFIRHWLPELNNV 435 Q + DP G FIRHW+PEL N+ Sbjct: 537 QSLKADPTGDFIRHWVPELRNL 558 >gi|156546843|ref|XP_001606405.1| PREDICTED: similar to cryptochrome 2 [Nasonia vitripennis] Length = 648 Score = 343 bits (881), Expect = 3e-92, Method: Composition-based stats. Identities = 123/498 (24%), Positives = 189/498 (37%), Gaps = 32/498 (6%) Query: 6 AMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASL 65 + W R LR+ DN +L + VF+ P +S + F+ L Sbjct: 82 GKKHTVHWFRKGLRLHDNPSLREGLAGASTF-RCVFVLDPWFAGSANVSINKWRFLLQCL 140 Query: 66 LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125 + +SL Q + + L + T L + E RD+ + Sbjct: 141 EDLDRSLHQLNSRLFVIRG----QPADALPKLFREWGTTSLTFEEDPEPYGRVRDENITT 196 Query: 126 RLQH-RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL 184 + + L I+ + + +I + + + V A + Sbjct: 197 LCKELGITVVQRVSHTLYKLDEIIEKNGGKPPLTYHQFQNVIARMDPPEYPAAAVTAACI 256 Query: 185 TGPVTPSN--------IPRFFDYPFQA---IDPMFPIGEQNALHILRKFCKEKVYYYVEQ 233 TP +P + F + P++ GE AL L + + K + Sbjct: 257 GSAYTPLKDDHDDFFGVPTLEELGFDTEGLMAPVWVGGETEALARLERHLERKAWVASFG 316 Query: 234 RDIPAIQGT----SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWRE 289 R Q + LSPYL G LS R + +L + + IK S +L+WRE Sbjct: 317 RPKMTPQSLLPSQTGLSPYLRFGCLSTRLFYYQLADLYKK--IKKTIPPLSLHGQLLWRE 374 Query: 290 FYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWM 349 F+ P+ P +I W+K+ L W G TGFP IDA M QL GW+ Sbjct: 375 FFYCAATNNPNFDRMHG-NPICVQIPWDKNVVALSKWANGQTGFPWIDAIMTQLREEGWI 433 Query: 350 HNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRI 408 H R A FL + DL + W G + F LLD D + N G W W S + +F Sbjct: 434 HQLARHAVACFLTRGDLWISWEEGMKVFDELLLDADWSINAGMWMW-LSCSSFFQQFFHC 492 Query: 409 FNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPH------SWLDKNDLSLNYPLPIVD 462 + P G++ DP G +IR +LP L N PT+YIH P K + Y LP+V+ Sbjct: 493 YCPVRFGRKADPNGDYIRRYLPVLKNFPTRYIHEPWNAPLSVQRAAKCIIGQEYALPMVN 552 Query: 463 HKKACHHTLNQYYAAKKQ 480 H K+ + + +Q Sbjct: 553 HSKSSRINVERMKRVYQQ 570 >gi|254776317|ref|ZP_05217833.1| Phr protein [Mycobacterium avium subsp. avium ATCC 25291] Length = 442 Score = 343 bits (880), Expect = 3e-92, Method: Composition-based stats. Identities = 139/472 (29%), Positives = 213/472 (45%), Gaps = 34/472 (7%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 L+W R DLR+ D+ AL AA + + V+A F+ P Q R+ F+ SL + Sbjct: 2 PALLWFRRDLRLHDHPALSAAADSDE--VLACFVLDPRL--QRSSGPRRLQFLGDSLRVL 57 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128 + L + +V + + + + + + + + RRD + L Sbjct: 58 RDELDGRLLVTRGRPDIRIPEIAKAI-------GASSVHVSEDFTPFGKRRDARVRAALA 110 Query: 129 HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188 V + L+ PG + Y+V+TPF + + ++ A L Sbjct: 111 S-VPLVATGSPYLVAPGRVTKPDGSPYQVFTPFLRRWRDTGWRPPAKTGAASARWLDPAR 169 Query: 189 TPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPY 248 + P GE A + + F + Y + R P I+GTS++S + Sbjct: 170 LGITAC---EIPDPGATLDLAAGEAAARNQWKTFVDNGLANYADDRHRPDIEGTSRMSAH 226 Query: 249 LSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFI 308 + G + PR L +GA ++L EL +R+FY ++ P+ + + Sbjct: 227 VKFGTIHPRTLVADL--------DLRAAGARTYLRELAFRDFYADVLHHRPASAW-RNWN 277 Query: 309 PWTEKIEWNKDSHL---LQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365 + I + +AWK G TGFP +DA MRQL G+MHNR+RM ASFLVKDL Sbjct: 278 SAFDAIRTDTGDEAGRRFEAWKAGETGFPFVDAGMRQLRQTGFMHNRVRMTVASFLVKDL 337 Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425 + W+ G +F+ QL+DGDLA+N GWQW A G D+ PYFR+FNP QG++FDP G +I Sbjct: 338 HLPWQWGAHWFLQQLVDGDLANNQHGWQWCAGCGTDAAPYFRVFNPAAQGEKFDPSGDYI 397 Query: 426 RHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477 R W+PEL + L + Y PIVDH L +Y + Sbjct: 398 RRWVPELRCADDPH-------LRTGERPPGYLAPIVDHATERAEALRRYRSM 442 >gi|297598791|ref|NP_001046243.2| Os02g0204400 [Oryza sativa Japonica Group] gi|306756329|sp|Q0E2Y1|UVR3_ORYSJ RecName: Full=(6-4)DNA photolyase gi|255670698|dbj|BAF08157.2| Os02g0204400 [Oryza sativa Japonica Group] Length = 551 Score = 343 bits (880), Expect = 4e-92, Method: Composition-based stats. Identities = 131/500 (26%), Positives = 210/500 (42%), Gaps = 31/500 (6%) Query: 12 VWLRNDLRITDNKAL-YAACHNSDAKVIAVFIATPEQWRQHGISA---------RQSHFI 61 VW R LR+ DN AL A + A++ VF+ P R + + F+ Sbjct: 17 VWFRKGLRVHDNPALDAARRGGAAARLYPVFVLDPRYLRPDQAAPSPGSARAGVARVRFL 76 Query: 62 YASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDK 121 SL + L + G + + D + + + KL + E + RDK Sbjct: 77 LESLSDLDARLRRLGSRLLLLRARDDGDVAGTVCAALKDWNIGKLCFESDTEPYALARDK 136 Query: 122 LLEK-RLQHRVICKSFDDSVLLPPGSIL-NHALQMYKVYTPFRKALIQNLVQADLRSLPV 179 + + S L P I+ + + Y F + + Sbjct: 137 KVMDFAAASGIDVFSPVSHTLFDPAEIIEKNGGRPPMTYQSFVAIAGEPPEPIMEEYSEL 196 Query: 180 PAIRLTGPVTPSNIPRFFDYPFQAID----PMFPIGEQNALHILRKFCKEKVY--YYVEQ 233 P + TG +PR + + I +F GE AL +R+ +K + + + Sbjct: 197 PPVGDTGEYELLPVPRVEELGYGDISQEDLSLFRGGETEALKRMRESLHDKEWVAKFEKP 256 Query: 234 RDIPAI---QGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREF 290 + P+ T+ LSPYL G LS R ++ +++ + K + S +L+WR+F Sbjct: 257 KGDPSAFLKPATTVLSPYLKFGCLSSRYFYHCIQDIYRSTK-KHTNPPVSLTGQLLWRDF 315 Query: 291 YRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMH 350 + + P+ K ++I W ++ L AW+ G TG+P IDA M QL GWMH Sbjct: 316 FYTVAFGTPNFDQMKG-NKICKQIPWTENEELFPAWRDGRTGYPWIDAIMIQLRKWGWMH 374 Query: 351 NRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIF 409 + R A FL + DL + W G + F L+D D A NNG W W S + Y RI+ Sbjct: 375 HLARHSVACFLTRGDLFIHWEKGRDVFERLLIDSDWAINNGNWMW-LSCSSFFYQYHRIY 433 Query: 410 NPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWL------DKNDLSLNYPLPIVDH 463 +PT GK++DP G +IRH++P L ++P +YI+ P + + +YP P+VDH Sbjct: 434 SPTSFGKKYDPNGNYIRHFIPVLKDMPKEYIYEPWTAPLSIQKKANCIIGKDYPKPVVDH 493 Query: 464 KKACHHTLNQYYAAKKQSLL 483 A A + L Sbjct: 494 AIASKECKKMMGEAYASNRL 513 >gi|125590574|gb|EAZ30924.1| hypothetical protein OsJ_15004 [Oryza sativa Japonica Group] Length = 697 Score = 343 bits (880), Expect = 4e-92, Method: Composition-based stats. Identities = 139/485 (28%), Positives = 225/485 (46%), Gaps = 23/485 (4%) Query: 16 NDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQKSLSQK 75 DLR+ DN A AA + +V+ ++ PE+ + ++ SL + SL + Sbjct: 23 RDLRVEDNPA-LAAAARAGGEVVPAYVWAPEEDGPYYPGRVSRWWLSQSLKHLDASLRRL 81 Query: 76 GIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR-LQHRVICK 134 G + S D++ L T+LF+N Y+ + RD L++ +I + Sbjct: 82 GAGKLVTRRSA--DAVVALLQLVRDTGATRLFFNHLYDPISLVRDHRLKEMMAAEGIIVQ 139 Query: 135 SFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG-PVTPSNI 193 SF+ +L P +++ Q + ++ PF + LP I + PS+ Sbjct: 140 SFNADLLYEPWEVVDDEGQSFTMFAPFWNRCLSMPYDPAAPLLPPKRINSGDLSMCPSDD 199 Query: 194 PRFFDYPFQAIDPM----FPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYL 249 F D + + + + G QNA L F + +Y R TS LSPYL Sbjct: 200 LIFEDDSERGSNALLARAWSPGWQNADKALTAFLNGPLIHYSVNRKKADSASTSLLSPYL 259 Query: 250 SIGVLSPRQCWNRLKEEFVDLLIKPKSGAFS----WLNELIWREFYRHLMAFYPSVCMGK 305 G LS R+ ++ ++ + + + A +L + RE+ R+L +P K Sbjct: 260 HFGELSVRKVFHLVRMKQLVWSNEGNRAAEESCTLFLRSIGLREYSRYLSFNHP-CSHEK 318 Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365 P + W + + W+QG TG+P++DA MR+L GW+H+R+R++ +SF VK L Sbjct: 319 PLLAHLRFFPWVINECYFKIWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFVKVL 378 Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425 + WR G +YF LLD DL S+ GWQ+ + + D RI NP ++G +FDP G ++ Sbjct: 379 QLPWRWGMKYFWDTLLDADLESDALGWQYISGSLPDGRELDRIDNPQLEGYKFDPHGEYV 438 Query: 426 RHWLPELNNVPTQYIHAPHSWLDK------NDLSLNYPLPIV--DHKKAC-HHTLNQYYA 476 R WLPEL +PT++IH P +L NYPLPIV D A L++ + Sbjct: 439 RRWLPELARLPTEWIHHPWDAPASVLQAAGVELGSNYPLPIVGLDAANARLQEALSEMWQ 498 Query: 477 AKKQS 481 + S Sbjct: 499 LEAAS 503 >gi|296140720|ref|YP_003647963.1| deoxyribodipyrimidine photo-lyase [Tsukamurella paurometabola DSM 20162] gi|296028854|gb|ADG79624.1| Deoxyribodipyrimidine photo-lyase [Tsukamurella paurometabola DSM 20162] Length = 451 Score = 343 bits (880), Expect = 4e-92, Method: Composition-based stats. Identities = 144/471 (30%), Positives = 220/471 (46%), Gaps = 24/471 (5%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 + W R DLR+ DN AL A + V+ + + P H + + + A++L + Sbjct: 2 TVIWWARRDLRLGDNPALCA--AAAAGPVLPLVVLDPALL--HDGARPREAWYAANVLAL 57 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL- 127 L C +E + + L+ T + +R+ RRD + RL Sbjct: 58 DDQLG-------GELCLRSGSPVEEVLAVALETGATAVHVSRETTPFGSRRDASIRDRLA 110 Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187 +H + + PG I+ Y+V+ F++A ++ A + Sbjct: 111 EHGIDWVETGSPYAVTPGRIVKSDGTPYRVFGAFQRAWREHRWPAPAQLPDRVHWARPPA 170 Query: 188 VTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSP 247 + + P+ P GE AL +F +++ Y + RD P +S+LSP Sbjct: 171 GGAAERRSLAAMVEASPVPLPPAGESAALDRWHRFRTDELARYAQDRDRPDHDASSRLSP 230 Query: 248 YLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPF 307 YL +G + PR L GA + +EL WR+FY ++ +P + Sbjct: 231 YLKVGAVHPRTLLTGL---------GSSDGAAKYASELCWRDFYADVLYHHPD-SLRTDL 280 Query: 308 IPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLV 367 +E+ AW++G TG+P++DA MRQL T GWMHNR+RM+ ASFL KDL V Sbjct: 281 TKALAGLEYTPPGADFTAWQRGATGYPLVDAGMRQLRTEGWMHNRVRMVVASFLSKDLHV 340 Query: 368 DWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRH 427 W G +F+ LLDGD ASN GWQW A TG D+ PYFR+FNPT Q ++FDP+G ++R Sbjct: 341 WWPHGAAHFLDLLLDGDPASNAHGWQWVAGTGTDAAPYFRVFNPTTQAEKFDPRGDYVRR 400 Query: 428 WLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478 ++PEL ++ AP D + YP PIVDH + TL +Y + Sbjct: 401 YVPELRHLDGAAALAPWKHTD--GYAHGYPAPIVDHAEERAVTLARYGTVR 449 >gi|254372340|ref|ZP_04987831.1| deoxyribodipyrimidine photolyase [Francisella tularensis subsp. novicida GA99-3549] gi|151570069|gb|EDN35723.1| deoxyribodipyrimidine photolyase [Francisella novicida GA99-3549] Length = 499 Score = 343 bits (879), Expect = 4e-92, Method: Composition-based stats. Identities = 128/483 (26%), Positives = 215/483 (44%), Gaps = 31/483 (6%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 + +VW + DLR+TDN AL A D ++ ++I PE W+Q +S RQ F+ L ++ Sbjct: 1 MQIVWFKRDLRVTDNLALSLAAEKGD--ILPLYIIEPELWQQPDMSHRQYLFLSECLEEL 58 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEV-RRDKLLEKRL 127 L++ G D++E + + + ++ +++ N +RD LEK Sbjct: 59 NTELTKLGQSLAIM----LGDAVEIFEQLIQKYNIKNVWSHQETWNNWTYQRDIKLEKFF 114 Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187 + I ++ K + + + + +++A + + ++ P Sbjct: 115 KQNNIVWHQPYQ-----NGVVRCLADRDKWALLWHQRMSEKIIRAPTKLKFICENQIKIP 169 Query: 188 VTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIP--AIQGTSQL 245 S + G AL IL F ++ Y ++ P A + S+L Sbjct: 170 TAES-----LGLEYDNCYKRQKGGRIRALRILDSFLYQRGCGYTKEMSSPVTAFKSCSRL 224 Query: 246 SPYLSIGVLSPRQCWNR-------LKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFY 298 SPY++ GV+S ++ + + +KE V K S S+L+ L W + + Sbjct: 225 SPYIAFGVISLKEIYQKANQRKNEIKESRVKNKTKWLSAMRSFLSRLRWHCHFMQKLEDQ 284 Query: 299 PSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITA 358 PS+ + + + +AWK G TG+P+IDA MR L GW++ R+R + Sbjct: 285 PSIEYENLHSAYDQLRTEQLNQQCFEAWKTGNTGYPMIDACMRALIATGWLNFRMRAMLM 344 Query: 359 SFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRF 418 SF L +DWR+ Y D + + Q +G + RI+NP Q Sbjct: 345 SFASYHLWLDWRVTSLYLARLFTDYEPGIHYSQVQMQ--SGTTGINSIRIYNPIKQSIDQ 402 Query: 419 DPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478 DP G FIR WLPEL NV ++ IH P WL+K++ SL+YP PI+D K+A + Y + Sbjct: 403 DPNGEFIRRWLPELENVSSENIHTP--WLEKHN-SLDYPDPIIDEKQARKFAADNIYKIR 459 Query: 479 KQS 481 K S Sbjct: 460 KSS 462 >gi|195484786|ref|XP_002090823.1| GE12583 [Drosophila yakuba] gi|194176924|gb|EDW90535.1| GE12583 [Drosophila yakuba] Length = 540 Score = 343 bits (879), Expect = 5e-92, Method: Composition-based stats. Identities = 132/508 (25%), Positives = 206/508 (40%), Gaps = 38/508 (7%) Query: 1 MKATTAMSVHLVWLRNDLRITDNKALYA---ACHNSDAK--VIAVFIATPEQWRQHGISA 55 M A + VH W R LR+ DN AL A + + K V +FI P + A Sbjct: 1 MDAQRSTLVH--WFRKGLRVHDNPALSQIFSAANAAPGKYFVRPIFILDPGILDWMQVGA 58 Query: 56 RQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEIN 115 + F+ +L + L + + + RV L + E Sbjct: 59 NRWRFLQQTLEDLDNQLRKLNSRLFVVRGKP----ADVFPRIFKSWRVEILSFETDIEPY 114 Query: 116 EVRRDKLLEKRLQ-HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADL 174 + RD ++K + V +++ + P ++ L + +++ L + Sbjct: 115 SMTRDAAVQKLAKTEGVKVETYCSHTIYNPELVIAKNLGKAPITYQKFLGIVEQLKLPKV 174 Query: 175 RSLPVPAIRLTGPVTPS------------NIPRFFDYPFQAIDPMFPIGEQNALHILRKF 222 P +T P + + P + FP GE AL + Sbjct: 175 LGSPEKLTNITSPPKDEVEQEDLAAYDCPTMEQLVKRPEELGPNKFPGGETEALRRMEDS 234 Query: 223 CKEKVY--YYVEQRDIPA--IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGA 278 K++++ + + P T+ LSPYL G LS R + +L E + K Sbjct: 235 LKDEIWVARFEKPNTAPNSLEPSTTVLSPYLKFGCLSARLFYQKLTE-IIKRQSKHSQPP 293 Query: 279 FSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDA 338 S + +L+WREFY + A P+ + +I W + L+AW G TG+P IDA Sbjct: 294 VSLIGQLMWREFYYTVAAAEPNFDRMLG-NVYCMQIPWQEHPDHLEAWTHGRTGYPFIDA 352 Query: 339 AMRQLNTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAAS 397 MRQL GW+H+ R A FL + DL + W G+ F LLD D A N G W W S Sbjct: 353 IMRQLRQEGWIHHLARHAVACFLTRGDLWISWEEGQRVFEQLLLDQDWALNAGNWMW-LS 411 Query: 398 TGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND------ 451 YFR+++P GK+ DPQG +IR ++PEL+ P+ I+ P + Sbjct: 412 ASAFFYQYFRVYSPVAFGKKTDPQGHYIRKYVPELSKYPSGCIYEPWKASLADQRAYGCV 471 Query: 452 LSLNYPLPIVDHKKACHHTLNQYYAAKK 479 L +YP IV H+ + + AA K Sbjct: 472 LGTDYPHRIVKHEVVHKDNIKRMGAAYK 499 >gi|19551863|ref|NP_599865.1| deoxyribodipyrimidine photolyase [Corynebacterium glutamicum ATCC 13032] gi|62389521|ref|YP_224923.1| deoxyribodipyrimidine photolyase [Corynebacterium glutamicum ATCC 13032] gi|41324855|emb|CAF19337.1| DEOXYRIBODIPYRIMIDINE PHOTOLYASE [Corynebacterium glutamicum ATCC 13032] Length = 482 Score = 343 bits (879), Expect = 5e-92, Method: Composition-based stats. Identities = 155/500 (31%), Positives = 225/500 (45%), Gaps = 67/500 (13%) Query: 8 SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67 S L+W R+DLR++DN AL A + VI +FI ++ I A + SL Sbjct: 21 SPTLLWFRDDLRLSDNAALKWAADHG--PVIGLFI---DETINRSIGAAARWWREQSLNA 75 Query: 68 VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127 + + LS G+ + +E L + V + +NR+Y D L+K L Sbjct: 76 LAQDLSFYGVPLLRRTG----NPLEILPKIVSEMEVKAVTWNRRYHQPLCEVDATLKKNL 131 Query: 128 QHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPF----RKALIQNLVQADLRSLPVPAI 182 + + I S +L P + YKV+TPF + + + ++PVP+ Sbjct: 132 RDKGIEVHSHPGFLLTEPWEVSTATGTPYKVFTPFSKAAWEVARVHAYETVKNNVPVPS- 190 Query: 183 RLTGPVTPSNIPRFFDYPFQAIDPMFP--IGEQNALHILRKFCKEKVYYYVEQRDIPAIQ 240 LTGP + PF + + GE+NA L F + + Y + RD A Sbjct: 191 HLTGPEDVELPILEMEQPFWSTTLVKECAPGEKNASEKLFDFLEH-LQDYPQARDSLARS 249 Query: 241 GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPS 300 TS+LS +L G +S + W + G +L EL+WR+F H + P Sbjct: 250 ATSKLSAHLRFGEISIHRVW-------AETAAIDSEGTELFLKELLWRDFAWHRLYALPH 302 Query: 301 VCMGKPFIPWTEKIEWNKDS----------------------HLLQAWKQGYTGFPIIDA 338 + + W+ D L AW+ G TG P++DA Sbjct: 303 MDTQN-VRMQFNRFGWSWDPSEKDKLNTPSTPLIPTKADQFHEDLAAWRAGKTGIPLVDA 361 Query: 339 AMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAAST 398 MR+L G MHNR+RM+ ASFL K+L + WR GEE+F L+D D ASN WQWAA + Sbjct: 362 GMRELWATGSMHNRVRMVVASFLTKNLQIHWRHGEEWFWETLVDADPASNAFNWQWAAGS 421 Query: 399 GNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPL 458 G+D+ PYFRIFNP Q K+FDP T+IR W+PE + +YP Sbjct: 422 GDDASPYFRIFNPVTQAKKFDPDETYIRRWVPEYG-------------------TPSYPD 462 Query: 459 PIVDHKKACHHTLNQYYAAK 478 PIVD K++ L+ Y A K Sbjct: 463 PIVDLKESRQIALDAYSAIK 482 >gi|195580452|ref|XP_002080051.1| GD21692 [Drosophila simulans] gi|194192060|gb|EDX05636.1| GD21692 [Drosophila simulans] Length = 540 Score = 342 bits (878), Expect = 6e-92, Method: Composition-based stats. Identities = 131/508 (25%), Positives = 204/508 (40%), Gaps = 38/508 (7%) Query: 1 MKATTAMSVHLVWLRNDLRITDNKALYA---ACHNSDAK--VIAVFIATPEQWRQHGISA 55 M A + VH W R LR+ DN AL A + + K V +FI P + A Sbjct: 1 MDAQRSTLVH--WFRKGLRVHDNPALSHIFTAANAAPGKYFVRPIFILDPGILDWMQVGA 58 Query: 56 RQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEIN 115 + F+ +L + L + + E RV L + E Sbjct: 59 NRWRFLQQTLEDLDNQLRKLDSRLFVVRGKP----AEVFPRIFKSWRVEMLTFETDIEPY 114 Query: 116 EVRRDKLLEKRLQ-HRVICKSFDDSVLLPPGSILNHA------------LQMYKVYTPFR 162 + RD ++K + V ++ + P ++ + ++ P Sbjct: 115 SLTRDAAVQKLAKAEGVKVETHCSHTIYNPELVIAKNLGKAPITYQKFLGIVDQLKVPKV 174 Query: 163 KALIQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKF 222 + + L + + + + + P + FP GE AL + + Sbjct: 175 LGVPEKLKKMHTPPKDEVEQKDSAAYDCPTMEQLVKRPEELGPNKFPGGETEALRRMEES 234 Query: 223 CKEKVY--YYVEQRDIPA--IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGA 278 K++++ + + P T+ LSPYL G LS R +LKE + K Sbjct: 235 LKDEIWVARFEKPNTAPNSLEPSTTVLSPYLKFGCLSARLFNQKLKE-IIKRQPKHSQPP 293 Query: 279 FSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDA 338 S + +L+WREFY + A P+ + +I W + L+AW G TG+P IDA Sbjct: 294 VSLIGQLMWREFYYTVAAAEPNFDRMLG-NVYCMQIPWQEHPDHLEAWTHGRTGYPFIDA 352 Query: 339 AMRQLNTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAAS 397 MRQL GW+H+ R A FL + DL + W G+ F LLD D A N G W W S Sbjct: 353 IMRQLRQEGWIHHLARHAVACFLTRGDLWISWEEGQRVFEQLLLDQDWALNAGNWMW-LS 411 Query: 398 TGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND------ 451 YFR+++P GK+ DPQG +IR ++PEL+ P I+ P + Sbjct: 412 ASAFFHQYFRVYSPVAFGKKTDPQGHYIRKYVPELSKYPAGCIYEPWKASLADQRAYGCV 471 Query: 452 LSLNYPLPIVDHKKACHHTLNQYYAAKK 479 L +YP IV H+ + + AA K Sbjct: 472 LGTDYPHRIVKHEVVHKENIKRMGAAYK 499 >gi|242060916|ref|XP_002451747.1| hypothetical protein SORBIDRAFT_04g007140 [Sorghum bicolor] gi|241931578|gb|EES04723.1| hypothetical protein SORBIDRAFT_04g007140 [Sorghum bicolor] Length = 550 Score = 342 bits (878), Expect = 6e-92, Method: Composition-based stats. Identities = 133/515 (25%), Positives = 220/515 (42%), Gaps = 37/515 (7%) Query: 1 MKATTAMSVHLVWLRNDLRITDNKAL-----YAACHNSDAKVIAVFIATPEQWRQHGISA 55 M+A TA + +VW R LR+ DN AL Y A S ++ VF+ P R ++ Sbjct: 1 MEAATAATAAMVWFRKGLRVHDNPALDAARRYGAGAASARRLYPVFVLDPRYLRPDPAAS 60 Query: 56 ---------RQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKL 106 + F+ SL + + + + DD + + + + KL Sbjct: 61 SPGSARAGVARIRFLLESLSDLDA--RLRRLGSRLLLLRARDDVADAVCAALKDWNIGKL 118 Query: 107 FYNRQYEINEVRRDKLLEK-RLQHRVICKSFDDSVLLPPGSILNHAL-QMYKVYTPFRKA 164 + E + RDK + L + + L P I+ + Y F Sbjct: 119 CFESDTEPYALARDKKVTDFALASGIEVFTPVSHTLFDPAEIIKKNGGRPPLTYQSFVSI 178 Query: 165 LIQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAID----PMFPIGEQNALHILR 220 + +P + TG +P + + I P F GE AL ++ Sbjct: 179 AGEPPDPIMEEYSELPPLGDTGEYELLPVPTVEELGYVDISEEEIPPFRGGETEALRRMK 238 Query: 221 KFCKEKVY--YYVEQRDIPAI---QGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPK 275 + + K + + + + P+ T+ LSPYL G LS R ++ +++ + + K Sbjct: 239 ESLQNKEWVAKFEKPKGDPSAFLKPSTTVLSPYLKFGCLSSRYFYHCIQDVYKSVRNHTK 298 Query: 276 SGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPI 335 S + +L+WR+F+ + P+ K ++I W+++ L AW+ G TG+P Sbjct: 299 P-PVSLIGQLLWRDFFYTVSYGTPNFDRMKG-NKICKQIPWSENEELFVAWRDGQTGYPW 356 Query: 336 IDAAMRQLNTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQW 394 IDA M QL GWMH+ R A FL + D+ + W G + F L+D D A NNG W W Sbjct: 357 IDAIMIQLRKWGWMHHLARHSVACFLTRGDMFIHWEKGRDVFERLLIDSDWAINNGNWMW 416 Query: 395 AASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWL------D 448 S + Y RI++P GK++DP G +IRH++P L ++P +YI+ P + Sbjct: 417 -LSCSSFFYQYHRIYSPITFGKKYDPNGNYIRHFIPVLKDMPREYIYEPWTAPLSIQKKA 475 Query: 449 KNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQSLL 483 + +YP P+VDH+ A + A S L Sbjct: 476 NCIIGKDYPKPVVDHETASKECKKRMGEAYASSRL 510 >gi|255545724|ref|XP_002513922.1| DNA photolyase, putative [Ricinus communis] gi|223547008|gb|EEF48505.1| DNA photolyase, putative [Ricinus communis] Length = 660 Score = 342 bits (878), Expect = 7e-92, Method: Composition-based stats. Identities = 139/492 (28%), Positives = 222/492 (45%), Gaps = 44/492 (8%) Query: 5 TAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYAS 64 + +VW R DLR+ DN AL A V+AVF+ PE+ + ++ S Sbjct: 2 SGGGCSIVWFRRDLRVEDNPALAAGVRAG--AVVAVFVWAPEEEGHYYPGRVSRWWLKQS 59 Query: 65 LLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLE 124 L + SL G V + + DS+ L T+LF+N Y+ + RD + Sbjct: 60 LAHLDSSLRSLGTVLVSKRST---DSVSSLLEVVKSTGATQLFFNHLYDPISLVRDHRAK 116 Query: 125 KRL-QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIR 183 + L + +S + PG + + LP P Sbjct: 117 EVLTAQGIAVRSLTRICYMNPG-----------------XXCLSMPYDPEAPLLP-PKRI 158 Query: 184 LTGPVT--PSNIPRFFDYPFQAIDPM----FPIGEQNALHILRKFCKEKVYYYVEQRDIP 237 ++G ++ PS+ F D + + + + G NA L F + Y + R Sbjct: 159 ISGDISRCPSDTLIFEDESEKGSNALLARAWSPGWSNANKALTTFINGPLIEYSKNRRKA 218 Query: 238 AIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFS----WLNELIWREFYRH 293 TS LSP+L G +S R+ + ++ + V + +L + RE+ R+ Sbjct: 219 DSATTSFLSPHLHFGEVSVRKVLHLVRIKQVLWANEGNKAGEESVNLFLKSIGLREYSRY 278 Query: 294 LMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRL 353 L +P +P + + W + +AW+QG TG+P++DA MR+L GW+H+R+ Sbjct: 279 LSFNHP-YSHERPLLGHLKFFPWIVNEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRI 337 Query: 354 RMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTI 413 R++ +SF VK L + WR G +YF LLD DL S+ GWQ+ + T D + RI NP Sbjct: 338 RVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTLPDGREFDRIDNPQF 397 Query: 414 QGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKN------DLSLNYPLPIV--DHKK 465 +G +FDP G ++R WLPEL +PT++IH P + + +L NYPLPIV D K Sbjct: 398 EGYKFDPHGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPLPIVGIDAAK 457 Query: 466 AC-HHTLNQYYA 476 L++ + Sbjct: 458 VRLQEALSEMWQ 469 >gi|18858467|ref|NP_571867.1| cryptochrome 2b [Danio rerio] gi|8698590|dbj|BAA96849.1| cryptochrome 2b [Danio rerio] Length = 638 Score = 342 bits (878), Expect = 7e-92, Method: Composition-based stats. Identities = 119/500 (23%), Positives = 195/500 (39%), Gaps = 34/500 (6%) Query: 7 MSVH-LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASL 65 MSV+ + W R LR+ DN AL A + +D + V+ P + + F+ SL Sbjct: 1 MSVNSVHWFRKGLRLHDNPALLEALNGADT-LRCVYFLDPWFAGASNLGVNRWRFLLQSL 59 Query: 66 LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125 + SL + + + + +V++L + E RD ++K Sbjct: 60 EDLDASLRKLNSCLFVIRG----QPADIFPRLFKEWKVSRLTFEFDSEPFGKERDAAIKK 115 Query: 126 -RLQHRVICKSFDDSVLLPPGSILN-HALQMYKVYTPFRKALIQNLVQADLRSLPVPAIR 183 + V L I+ + Q Y F+ + + P + Sbjct: 116 LACEAGVEVIVKISHTLYDLDRIIELNGGQSPLTYKRFQTLVSSMEPPDPPLASPDRGMM 175 Query: 184 LTGPVTPSNIPR-------FFDYPFQA---IDPMFPIGEQNALHILRKFCKEKVYYYVEQ 233 S R + F ++P GE AL + + + E Sbjct: 176 GKCVTPISENHRDKYGVPLLEELGFDTEGLAPAVWPGGESEALKRMERHLGPDSTAWQEN 235 Query: 234 RDIPAIQGTS------QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIW 287 + P + + LSPYL G LS R + + K + + S ++++W Sbjct: 236 FERPKMNASPLMASPLGLSPYLRFGCLSCRLFYCNSLSSTKKVK-KNMNPSISLYDKILW 294 Query: 288 REFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIG 347 REF+ P + P +I W++++ L W + TGFP IDA M QL G Sbjct: 295 REFFYTAATNNPRFDRMEG-NPICIRIPWDRNAEALAKWAEAKTGFPWIDAIMMQLRQEG 353 Query: 348 WMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYF 406 W+H+ R A FL + DL + W G + F LLD D + N G W S + +F Sbjct: 354 WIHHLARHAVACFLTRGDLWISWEEGMKVFEELLLDADWSVNAGSWL-CHSCSSFFQQFF 412 Query: 407 RIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPH------SWLDKNDLSLNYPLPI 460 + P G+R DP G FIR +LP L + P +YI+ P K + ++YP P+ Sbjct: 413 HCYCPVGFGRRIDPNGDFIRRYLPVLRDFPAKYIYDPWNAPHDVQLAAKCAIGVDYPKPM 472 Query: 461 VDHKKACHHTLNQYYAAKKQ 480 V+H +A + + +Q Sbjct: 473 VNHAEASRLNIERMRQIYQQ 492 >gi|77462693|ref|YP_352197.1| deoxyribodipyrimidine photo-lyase type I [Rhodobacter sphaeroides 2.4.1] gi|77387111|gb|ABA78296.1| Deoxyribodipyrimidine photo-lyase type I [Rhodobacter sphaeroides 2.4.1] Length = 471 Score = 342 bits (877), Expect = 7e-92, Method: Composition-based stats. Identities = 138/474 (29%), Positives = 214/474 (45%), Gaps = 25/474 (5%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 ++W R DLR+ DN L A +I +FI PE + A + + + Sbjct: 8 ILWFRRDLRLADNPMLAEAAATG-RPLIPLFILDPE---TEALGAAPKWRLGLGVEAFAR 63 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130 +L G + ++ L++ + + ++R +E + RD+ ++ L+ Sbjct: 64 ALEGLGSRLVLRRGP----ALAVLEALVAETGAAGVHWSRLWEPDWRARDEGVKAGLRQA 119 Query: 131 VI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLV----QADLRSLPVPAIRLT 185 I S + P + Y+VYTPF KA+ V R L ++ Sbjct: 120 GIEAASHAGHTIFEPREVETGQGGFYRVYTPFWKAVKDRPVAASSPPPARLLSPAEWPVS 179 Query: 186 GPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245 + ++ R + P +GE A L +F + Y +RD P TS+L Sbjct: 180 ERLACWDLGRAMHRGAAVVAPHLAVGEAAAAERLTRFLSGPLDRYAAERDRPDAPVTSRL 239 Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305 S L+ G +S R W+ + ++GA +L EL WREF HL+ P + + Sbjct: 240 SENLTYGEISARSLWHAGMR----ARAEGRAGAEKFLQELAWREFGWHLLYHTPEIAR-R 294 Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365 + + W D+ + W++G TG P +DAAMR+L G MHNR R+I S+L K L Sbjct: 295 NWRGDWDAFPWRGDNPDAERWRRGMTGEPFVDAAMRELFVTGTMHNRARLIAGSYLTKHL 354 Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425 L DWR+G+ +F L+D D ASN GWQW A +G D+ PYFRIFNP Q ++FDP+ + Sbjct: 355 LTDWRVGQAWFEDCLIDWDPASNALGWQWVAGSGPDASPYFRIFNPATQAEKFDPESAYR 414 Query: 426 RHWLPELNNVPTQYIHA-----PHSWLDKNDLSLNYPLPIVDHKKACHHTLNQY 474 + +L E+ P A P SW + D YP P+V + L Y Sbjct: 415 QRFLAEIARRPGPEALAFFEAVPRSWGLRPDRC--YPRPVVGLAEGRERALAAY 466 >gi|184201932|ref|YP_001856139.1| deoxyribodipyrimidine photo-lyase [Kocuria rhizophila DC2201] gi|183582162|dbj|BAG30633.1| deoxyribodipyrimidine photo-lyase [Kocuria rhizophila DC2201] Length = 441 Score = 342 bits (877), Expect = 8e-92, Method: Composition-based stats. Identities = 134/477 (28%), Positives = 214/477 (44%), Gaps = 45/477 (9%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 +V R+DLR+TD+ AL+ A + + V+ +++ E + +++ SL + Sbjct: 2 TTVVLFRDDLRVTDHPALHEAVSHGE-PVVCLYVLDEESEGVRPLGGAAKWWLHHSLTSL 60 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL- 127 LS+ G+ + + + + +L +NR+Y E D L++ Sbjct: 61 ASDLSELGVPLTLRRGPAG----KVVPHVVRETGADRLLWNRRYGGPERAVDAGLKEWAG 116 Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPV------PA 181 ++ V S+ S++ P ++ Y+V+TPF +A + P PA Sbjct: 117 ENGVEAHSYAGSLMFEPWTVSTQNGDPYRVFTPFWRACTSGPPPREPYPAPSSIDHADPA 176 Query: 182 IRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQG 241 V +P D+ + + +GE+ A L +F E++ Y + RD+PA Sbjct: 177 PASEDLVDWELLPTHPDWS-GGLARTWTVGERAAHERLDEFLDERLPRYTQDRDVPARPA 235 Query: 242 TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSV 301 TS LSP+L G +SP W+ E +L E+ WREF + + +P + Sbjct: 236 TSGLSPHLRWGEISPYTVWHTALER--------AENPGKFLTEVGWREFSWYNLYVHPDM 287 Query: 302 CMGKPFIPWTEKIEWNK-DSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASF 360 P + W D +L AW+ G TG P++DA M +L G M NR+RM+ AS Sbjct: 288 ATEN-INPKFDAFPWPPLDEDVLAAWQMGRTGIPLVDAGMHELWETGAMQNRVRMVVASL 346 Query: 361 LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDP 420 L K+LL+DWR+GE++F L+D D ASN WQW A G D+ PYFRIFN Q K+FDP Sbjct: 347 LAKNLLIDWRLGEQWFWDTLVDADPASNPHNWQWVAGCGTDAAPYFRIFNAETQQKKFDP 406 Query: 421 QGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477 ++ W V PIVD K++ H L + + Sbjct: 407 DFVYVDRWNGRQEGV----------------------EPIVDLKESRAHALELFKSL 441 >gi|254373814|ref|ZP_04989297.1| hypothetical protein FTDG_01598 [Francisella novicida GA99-3548] gi|151571535|gb|EDN37189.1| hypothetical protein FTDG_01598 [Francisella novicida GA99-3548] Length = 499 Score = 342 bits (877), Expect = 8e-92, Method: Composition-based stats. Identities = 129/483 (26%), Positives = 214/483 (44%), Gaps = 31/483 (6%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 + +VW + DLR+TDN AL A D ++ ++I PE W+Q +S RQ F+ L ++ Sbjct: 1 MQIVWFKRDLRVTDNLALSLAAERGD--ILPLYIIEPELWQQPDMSHRQYLFLSECLEEL 58 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEV-RRDKLLEKRL 127 L++ G D++E + + + ++ N++ N +RD LEK Sbjct: 59 NTELTKLGQSLTIM----LGDAVEIFEQLIQKYPIKNVWSNQETWNNWTYQRDIKLEKFF 114 Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187 + I ++ K + + + + +++A + + ++ P Sbjct: 115 KQNNIAWHQPYQ-----NGVVRCLADRDKWALLWHQRMSEKIIRAPTKLKFICENQIKIP 169 Query: 188 VTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIP--AIQGTSQL 245 S + G AL IL F ++ Y ++ P A + S+L Sbjct: 170 TAES-----LGLEYDNCYKRQKGGRIRALRILDSFLYQRGCSYTKEMSSPVTAFKSCSRL 224 Query: 246 SPYLSIGVLSPRQCWNR-------LKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFY 298 SPY++ GV+S ++ + + +KE V K S S+L+ L W + + Sbjct: 225 SPYIAFGVISLKEIYQKATQRKNEIKESRVKNKTKWLSAMRSFLSRLCWHCHFMQKLEDQ 284 Query: 299 PSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITA 358 PS+ + + + +AWK G TG+P+IDA MR L GW++ R+R + Sbjct: 285 PSIEYENLHSAYDQLRTEPLNQQCFEAWKTGNTGYPMIDACMRALIATGWLNFRMRAMLM 344 Query: 359 SFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRF 418 SF L +DWR+ Y D + + Q +G + RI+NP Q Sbjct: 345 SFASYHLWLDWRVTSLYLARLFTDYEPGIHYSQVQMQ--SGTTGINSIRIYNPIKQSIDQ 402 Query: 419 DPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478 DP G FIR WLPEL NV + IH P WL+K++ SL+YP PI+D K+A + Y + Sbjct: 403 DPNGEFIRRWLPELENVSNENIHTP--WLEKHN-SLDYPDPIIDEKQARKFAADNIYKIR 459 Query: 479 KQS 481 K S Sbjct: 460 KSS 462 >gi|134100631|ref|YP_001106292.1| putative deoxyribodipyrimidine photolyase [Saccharopolyspora erythraea NRRL 2338] gi|291006735|ref|ZP_06564708.1| deoxyribodipyrimidine photo-lyase [Saccharopolyspora erythraea NRRL 2338] gi|133913254|emb|CAM03367.1| putative deoxyribodipyrimidine photolyase [Saccharopolyspora erythraea NRRL 2338] Length = 448 Score = 342 bits (877), Expect = 8e-92, Method: Composition-based stats. Identities = 141/473 (29%), Positives = 219/473 (46%), Gaps = 36/473 (7%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M+ + DLR+ DN L AA +V+ +F+ + R S R++ F+ SL Sbjct: 1 MTTAIALFTRDLRVHDNPMLAAAAEAD--RVVPLFVLDDDIQRSRFASPRRTRFLDESLT 58 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 + ++L G + + ++ + + ++ +RR L + Sbjct: 59 DLDENLRGLGGRLVLRRGA----LVDEVCRIAEEVDAAEVHICADVSGYAMRRQARLAEA 114 Query: 127 LQHRVICKSFDDSVL--LPPGSILNH--ALQMYKVYTPFRKALIQNLVQAD---LRSLPV 179 L + D V+ L PG + + V+TP+ + ++ + R L + Sbjct: 115 LSAQRRELRCHDEVVTVLAPGRVTPGGADKDHFTVFTPYLRRWLETGKRPPAAKPRRLRL 174 Query: 180 PAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAI 239 P+ GP + D +P GE ++ V Y E+ D A Sbjct: 175 PSRLSIGPRPAG----------GSADGTWPGGETEGRRRADRWLGGGVRAYHERHDDLAA 224 Query: 240 QGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYP 299 TSQLSPYL G LS R+ +R G +++ +L WR+F+ ++A P Sbjct: 225 DATSQLSPYLHFGCLSARELADRA---------GRGEGPEAFVRQLAWRDFHHQVLAARP 275 Query: 300 SVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITAS 359 + + + P ++ W++D+ L+AWKQG TG PI+DA MRQL +GWMHNR R+IT S Sbjct: 276 E-AVHEDYRPRGDR--WHRDADALRAWKQGRTGVPIVDAGMRQLLELGWMHNRARLITGS 332 Query: 360 FLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFD 419 FL K L +DWR G +F L+DGD+A+N WQW A TG D+ P R+ NP Q R+D Sbjct: 333 FLTKSLYLDWRAGAWHFFDHLVDGDIANNCLNWQWVAGTGTDTRP-NRVLNPLRQADRYD 391 Query: 420 PQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLN 472 G ++R W+PEL + +H P D L YP PIVD +A L+ Sbjct: 392 AGGDYVRRWVPELAGLGAGDVHRPWRLGDDELGRLGYPAPIVDLDQARERFLD 444 >gi|194878837|ref|XP_001974136.1| GG21562 [Drosophila erecta] gi|190657323|gb|EDV54536.1| GG21562 [Drosophila erecta] Length = 540 Score = 342 bits (877), Expect = 8e-92, Method: Composition-based stats. Identities = 131/505 (25%), Positives = 204/505 (40%), Gaps = 36/505 (7%) Query: 4 TTAMSVHLVWLRNDLRITDNKALYA---ACHNSDAK--VIAVFIATPEQWRQHGISARQS 58 S + W R LR+ DN AL A + + K V +FI P + A + Sbjct: 2 DVKRSTLVHWFRKGLRVHDNPALSHIFSAANAAPGKYFVRPIFILDPGILDWMQVGANRW 61 Query: 59 HFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVR 118 F+ +L + L + G + E RV L + E + Sbjct: 62 RFLQQALEDLDNQLRKLGSRLFVVRGKP----AEVFPRIFKSWRVEILTFETDIEPYSLS 117 Query: 119 RDKLLEKRLQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSL 177 RD ++K + + ++ + P ++ L + +++ L + Sbjct: 118 RDASVQKLAKAAGVKVETHCSHTIYNPELVIAKNLGKAPITYQKFLGIVEQLKLPKVLGA 177 Query: 178 PVPAIRLTGPVTPS------------NIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKE 225 P +T P + + P + FP GE AL + K+ Sbjct: 178 PEKLQNITTPPNDEVEQEDSAAYDCPTMEQLVKRPEELGPNKFPGGETEALRRMEDSLKD 237 Query: 226 KVY--YYVEQRDIPA--IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSW 281 +++ + + P T+ LSPYL G LS R +LKE + K S Sbjct: 238 ELWVARFEKPNTAPNSLEPSTTVLSPYLKFGCLSARLFNQKLKE-IIKRQPKHSQPPVSL 296 Query: 282 LNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMR 341 + +L+WREFY + A P+ + +I W + + L+AW G TG+P IDA MR Sbjct: 297 IGQLMWREFYYTVAAAEPNFDRMMG-NVYCMQIPWQEHPNHLEAWTHGRTGYPFIDAIMR 355 Query: 342 QLNTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGN 400 QL GW+H+ R A FL + DL + W G+ F LLD D A N G W W S Sbjct: 356 QLRQEGWIHHLARHAVACFLTRGDLWISWEEGQRVFEQLLLDQDWALNAGNWMW-LSASA 414 Query: 401 DSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND------LSL 454 YFR+++P GK+ DPQG +IR ++PEL+ P+ I+ P + L Sbjct: 415 FFHQYFRVYSPVAFGKKTDPQGHYIRKYVPELSKYPSGCIYEPWKASLADQRAYGCVLGT 474 Query: 455 NYPLPIVDHKKACHHTLNQYYAAKK 479 +YP IV H+ + + AA K Sbjct: 475 DYPHRIVKHEVVHKENIKRMGAAYK 499 >gi|241667256|ref|ZP_04754834.1| deoxyribodipyrimidine photolyase [Francisella philomiragia subsp. philomiragia ATCC 25015] gi|254875807|ref|ZP_05248517.1| deoxyribodipyrimidine photolyase [Francisella philomiragia subsp. philomiragia ATCC 25015] gi|254841828|gb|EET20242.1| deoxyribodipyrimidine photolyase [Francisella philomiragia subsp. philomiragia ATCC 25015] Length = 499 Score = 342 bits (877), Expect = 9e-92, Method: Composition-based stats. Identities = 126/483 (26%), Positives = 210/483 (43%), Gaps = 31/483 (6%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 + +VW + DLRI DN AL A D V+ ++I P+ W+Q +S RQ F+ L ++ Sbjct: 1 MQVVWFKRDLRINDNLALSLASEKED--VLPLYIIEPKLWQQPDMSHRQYLFLSECLEEL 58 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEV-RRDKLLEKRL 127 L++ G D++E + Q + ++ +++ N +RD LEK Sbjct: 59 NTELTRLGQPLILM----IGDAVEVFEQLIQQYPINSVWSHQETWNNWTYQRDIKLEKFF 114 Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187 + I ++ K + K + + +V+A + + + P Sbjct: 115 KQNNIVWHQPYQ-----NGVVRCLADRDKWALVWHKRMSEKIVEAPNKLKFICENQTKIP 169 Query: 188 VTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIP--AIQGTSQL 245 S + G AL IL F ++ Y ++ P A + S+L Sbjct: 170 TAES-----IGLEYDNCYKRQKGGRVRALRILDSFLYQRGCGYTKEMSSPVTAFKSCSRL 224 Query: 246 SPYLSIGVLSPRQCWN-------RLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFY 298 SPY++ GV+S ++ + +K + K S S+L+ L W + + Sbjct: 225 SPYMAFGVISIKEVYQLANQRKNEIKASSIKNKTKWLSAMRSFLSRLRWHCHFMQKLEDQ 284 Query: 299 PSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITA 358 P++ + + + +AWK G TG+P+IDA MR L GW++ R+R + Sbjct: 285 PNIEYENLHSAYDQLRTEPLNQQYFEAWKTGNTGYPMIDACMRALIATGWLNFRMRAMLM 344 Query: 359 SFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRF 418 SF L +DWR+ Y D + + Q +G + RI+NP Q Sbjct: 345 SFASYHLWLDWRVTSLYLARLFTDYEPGIHYSQVQMQ--SGTTGINSIRIYNPIKQSIDQ 402 Query: 419 DPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478 DP G FIR WLPEL NV + IH P WL+K++ +++YP PI+D K+A + Y + Sbjct: 403 DPNGEFIRRWLPELENVSNENIHTP--WLEKHN-AVDYPDPIIDEKQARKFAADNIYKIR 459 Query: 479 KQS 481 K S Sbjct: 460 KNS 462 >gi|328676445|gb|AEB27315.1| Deoxyribodipyrimidine photolyase [Francisella cf. novicida Fx1] Length = 499 Score = 342 bits (877), Expect = 9e-92, Method: Composition-based stats. Identities = 126/483 (26%), Positives = 213/483 (44%), Gaps = 31/483 (6%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 + +VW + DLR+TDN AL A D ++ ++I PE W+Q +S RQ F+ L ++ Sbjct: 1 MQIVWFKRDLRVTDNLALSLAAEKGD--ILPLYIIEPELWQQPDMSHRQYLFLSECLEEL 58 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEV-RRDKLLEKRL 127 L++ G D++E + + + ++ +++ + +RD LEK Sbjct: 59 NTELTKLGQSLAIM----LGDAVEIFEQLIQKYNIKNVWSHQETWNDWTYQRDIKLEKFF 114 Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187 + I ++ + + + + +++A + + ++ P Sbjct: 115 KQNNIVWHQPYQ-----NGVVRCLADRDNWALLWHQRMSEKIIRAPTKLKFICENQIKIP 169 Query: 188 VTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIP--AIQGTSQL 245 S + G AL IL F ++ Y ++ P A + S+L Sbjct: 170 TAES-----LGLEYDNCYKRQKGGRIRALRILDSFLYQRGCGYTKEMSSPVTAFKSCSRL 224 Query: 246 SPYLSIGVLSPRQCWNR-------LKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFY 298 SPY++ GV+S ++ + + +KE V K S S+L+ L W + + Sbjct: 225 SPYIAFGVISLKEIYQKANQRKNEIKESSVKNKTKWLSAMRSFLSRLRWHCHFMQKLEDQ 284 Query: 299 PSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITA 358 PS+ + + + +AWK G TG+P+IDA MR L GW++ R+R + Sbjct: 285 PSIEYENLHSAYDQLRTEPLNQQCFEAWKTGNTGYPMIDACMRALIATGWLNFRMRAMLM 344 Query: 359 SFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRF 418 SF L +DWR+ Y D + + Q +G + RI+NP Q Sbjct: 345 SFASYHLWLDWRVTSLYLARLFTDYEPGIHYLQVQMQ--SGTTGINSIRIYNPIKQSIDQ 402 Query: 419 DPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478 DP G FIR WLPEL NV + IH P WL+K++ SL+YP PI+D K+A + Y + Sbjct: 403 DPNGEFIRRWLPELENVSNENIHTP--WLEKHN-SLDYPDPIIDEKQARKFAADNIYKIR 459 Query: 479 KQS 481 K S Sbjct: 460 KSS 462 >gi|119960573|ref|YP_946305.1| deoxyribodipyrimidine photolyase [Arthrobacter aurescens TC1] gi|119947432|gb|ABM06343.1| putative deoxyribodipyrimidine photolyase [Arthrobacter aurescens TC1] Length = 465 Score = 342 bits (877), Expect = 9e-92, Method: Composition-based stats. Identities = 142/496 (28%), Positives = 210/496 (42%), Gaps = 56/496 (11%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M +VW R+DLR+ DN AL A D +A+++ E +++ SL Sbjct: 1 MKPSIVWFRDDLRVADNPALRA--AVDDGAAVALYVLDEESPGIRPHGGAARWWLHHSLT 58 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 ++ L + G+ + + + L L++NR+Y E D ++ Sbjct: 59 ALRGDLDKLGVPLLLRRGP----ATDVLRETTTAIGAGGLYWNRRYGSAERTVDADIKAW 114 Query: 127 LQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185 + SF S+L P + YKV+TPF + + + L Sbjct: 115 AGEAGLHVSSFQASLLHEPWEVTTKTGGQYKVFTPFWRTVSAQDFREPLAVPEAGHGFTG 174 Query: 186 GPVTPSNIPRFFDYPFQ-----AIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ 240 + + P + + M+ G L +F + + Y E R+ P Sbjct: 175 KLPVYDQLESWQLLPTKPDWSGGLAEMWTPGAAAGHKRLARFVADGLSNYSEGRNRPDTD 234 Query: 241 GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPS 300 G+S LSPYL G LSP + W+ L K A + +EL WREF H P Sbjct: 235 GSSCLSPYLRWGELSPFEVWHAL-------GSKRSESASIYASELGWREFCWHQYFHNPQ 287 Query: 301 VCMGKPFIPWTEKIEW-----------------NKDSHLLQAWKQGYTGFPIIDAAMRQL 343 + P ++ W +AW+QG TGFP++DA RQL Sbjct: 288 LATAN-LRPEFDRFPWAWPGKNGNGNGGRHPGHESAPEEFRAWQQGRTGFPMVDAGQRQL 346 Query: 344 NTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSV 403 GWMHNR+RM+ ASFLVK+L + W++GE++F L+D D ASN WQW A +G D+ Sbjct: 347 WHTGWMHNRVRMVAASFLVKNLGIHWQLGEQWFWDTLVDADPASNPANWQWVAGSGADAS 406 Query: 404 PYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDH 463 P+FRIFNP Q +FDPQG +I HWLP+ + YP IVD Sbjct: 407 PFFRIFNPEAQRVKFDPQGRYIAHWLPDFG-------------------TPEYPEEIVDL 447 Query: 464 KKACHHTLNQYYAAKK 479 K L Y ++ Sbjct: 448 KTTRAEALEAYKEMRE 463 >gi|21323395|dbj|BAB98023.1| Deoxyribodipyrimidine photolyase [Corynebacterium glutamicum ATCC 13032] Length = 468 Score = 341 bits (876), Expect = 1e-91, Method: Composition-based stats. Identities = 155/500 (31%), Positives = 225/500 (45%), Gaps = 67/500 (13%) Query: 8 SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67 S L+W R+DLR++DN AL A + VI +FI ++ I A + SL Sbjct: 7 SPTLLWFRDDLRLSDNAALKWAADHG--PVIGLFI---DETINRSIGAAARWWREQSLNA 61 Query: 68 VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127 + + LS G+ + +E L + V + +NR+Y D L+K L Sbjct: 62 LAQDLSFYGVPLLRRTG----NPLEILPKIVSEMEVKAVTWNRRYHQPLCEVDATLKKNL 117 Query: 128 QHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPF----RKALIQNLVQADLRSLPVPAI 182 + + I S +L P + YKV+TPF + + + ++PVP+ Sbjct: 118 RDKGIEVHSHPGFLLTEPWEVSTATGTPYKVFTPFSKAAWEVARVHAYETVKNNVPVPS- 176 Query: 183 RLTGPVTPSNIPRFFDYPFQAIDPMFP--IGEQNALHILRKFCKEKVYYYVEQRDIPAIQ 240 LTGP + PF + + GE+NA L F + + Y + RD A Sbjct: 177 HLTGPEDVELPILEMEQPFWSTTLVKECAPGEKNASEKLFDFLEH-LQDYPQARDSLARS 235 Query: 241 GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPS 300 TS+LS +L G +S + W + G +L EL+WR+F H + P Sbjct: 236 ATSKLSAHLRFGEISIHRVW-------AETAAIDSEGTELFLKELLWRDFAWHRLYALPH 288 Query: 301 VCMGKPFIPWTEKIEWNKDS----------------------HLLQAWKQGYTGFPIIDA 338 + + W+ D L AW+ G TG P++DA Sbjct: 289 MDTQN-VRMQFNRFGWSWDPSEKDKLNTPSTPLIPTKADQFHEDLAAWRAGKTGIPLVDA 347 Query: 339 AMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAAST 398 MR+L G MHNR+RM+ ASFL K+L + WR GEE+F L+D D ASN WQWAA + Sbjct: 348 GMRELWATGSMHNRVRMVVASFLTKNLQIHWRHGEEWFWETLVDADPASNAFNWQWAAGS 407 Query: 399 GNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPL 458 G+D+ PYFRIFNP Q K+FDP T+IR W+PE + +YP Sbjct: 408 GDDASPYFRIFNPVTQAKKFDPDETYIRRWVPEYG-------------------TPSYPD 448 Query: 459 PIVDHKKACHHTLNQYYAAK 478 PIVD K++ L+ Y A K Sbjct: 449 PIVDLKESRQIALDAYSAIK 468 >gi|296392873|ref|YP_003657757.1| deoxyribodipyrimidine photo-lyase [Segniliparus rotundus DSM 44985] gi|296180020|gb|ADG96926.1| Deoxyribodipyrimidine photo-lyase [Segniliparus rotundus DSM 44985] Length = 444 Score = 341 bits (875), Expect = 1e-91, Method: Composition-based stats. Identities = 143/471 (30%), Positives = 222/471 (47%), Gaps = 33/471 (7%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 L W R DLR+ D L + + +F+ P R G + +++++L + + Sbjct: 6 LCWFRRDLRLADQPMLLEVAKEA----VGLFVLDPRLTR--GSGQARLDYLFSALAALDE 59 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130 +L + +V D + + V + + RD + L+ + Sbjct: 60 TLGGRLVV-------AEGDPARVVPDVARELNVGAVRCTEDFAPYGRARDAAVAAALKAQ 112 Query: 131 V-ICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189 + + PG + N + Y+V+TPFR+A + ++ L V+ Sbjct: 113 GRELRPAGSPYAISPGRVRNGSGNPYRVFTPFRRAWSAHGWPRPAQTGADSTRWLAAEVS 172 Query: 190 PSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYL 249 + P + + GEQ A F + + Y + RD PA+ GTS+LS +L Sbjct: 173 CQT-----ELPSPRL--VREAGEQAAAARWTAFLEGALAGYAQNRDFPAVDGTSRLSAHL 225 Query: 250 SIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIP 309 G L PR + + ++ EL WR+FY +++ +P Sbjct: 226 KFGALHPRTLL-----RDIAAADADDTDKDVFVTELAWRDFYADVLSHHPRTAWHN-VDR 279 Query: 310 WTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDW 369 ++ W+ AW++G TG+PI+DA MRQL GWMHNR+RMITASFL KDL + W Sbjct: 280 RFDRFAWSDSQEHFAAWQRGETGYPIVDAGMRQLAAEGWMHNRVRMITASFLTKDLHLPW 339 Query: 370 RIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWL 429 + G +F+ L+DGDLASN+ GWQW A TG D+ PYFR+FNPT QGK+FDP G +I+ W+ Sbjct: 340 QWGARHFIRLLVDGDLASNSHGWQWTAGTGTDAAPYFRVFNPTAQGKKFDPGGEYIQRWV 399 Query: 430 PELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQ 480 P+L ++P H P+ YP PIVDH + L +Y A K + Sbjct: 400 PQLRDMPGPKAHEPNPRPA------GYPPPIVDHAQERAEALLRYEAVKGR 444 >gi|168002746|ref|XP_001754074.1| UVR3 AtUVR3-like 6-4 DNA photolyase protein [Physcomitrella patens subsp. patens] gi|162694628|gb|EDQ80975.1| UVR3 AtUVR3-like 6-4 DNA photolyase protein [Physcomitrella patens subsp. patens] Length = 526 Score = 341 bits (875), Expect = 1e-91, Method: Composition-based stats. Identities = 136/510 (26%), Positives = 206/510 (40%), Gaps = 46/510 (9%) Query: 10 HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISA---------RQSHF 60 L+W R LR+ DN AL +C + + V VF+ P + + F Sbjct: 5 SLMWFRKGLRLHDNPALLRSCEGA-SHVYPVFVLDPWFLAPDPTAPSPGSKLVGVNRIRF 63 Query: 61 IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120 + SL + ++L + G + + ++ ++ +L + E RD Sbjct: 64 LLQSLEDLDENLRKHGSRLLVLHG----NPTTVIPELLMKWQINELCFEFDTEPYAQDRD 119 Query: 121 KLLEKRL-QHRVICKSFDDSVLLPP-GSILNHALQMYKVYTPFRKALIQNLVQADLRSLP 178 ++K ++ V S L P +I + Q Y F K + + Sbjct: 120 ADIKKLATKYGVEVFSPVSHTLFNPIDTIRKNGGQTPLTYQAFLKLTGKPPLPVTAPLQI 179 Query: 179 VPAIRLTGPVTPSNIPRFFDYPFQAIDPMF---PIGEQNALHILRKFCKEKVY--YYVEQ 233 V +P+ D + +D F P GE AL L K + + + + Sbjct: 180 PSPPEDLNDVHVVPVPKLEDLGYVNLDEEFSPHPGGETEALRRLDKSLVNQKWVCDFEKP 239 Query: 234 RDIPAI---QGTSQLSPYLS------------IGVLSPRQCWNRLKEEFVDLLIKPKSGA 278 + P T+ LSPYL G LS R RL + K S Sbjct: 240 KGNPTAFIEPATTVLSPYLKASNLGFLLKPMLFGCLSCRLFHQRLLAVYSQ-NKKHSSPP 298 Query: 279 FSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDA 338 S +L+WREF+ P+ P ++I W D LL AW+ G TG+P IDA Sbjct: 299 VSLEGQLLWREFFYTAGYGTPNFDRMLG-NPICKQIPWKDDDRLLAAWRDGQTGYPWIDA 357 Query: 339 AMRQLNTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAAS 397 AM QL GWMH+ R A FL + D+ V W G + F L+D D A NNG W W S Sbjct: 358 AMVQLRKWGWMHHLARHAVACFLTRGDMFVYWEKGRDVFDRLLIDSDWAINNGNWLW-LS 416 Query: 398 TGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDK------ND 451 Y RI++P GK++DP G +++H+LP L ++P YI+ P + Sbjct: 417 ASAFFHQYHRIYSPVTFGKKYDPDGLYVKHFLPVLKDMPKYYIYEPWTAPLAVQKKANCI 476 Query: 452 LSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481 + ++YP PIVDH A + A Q+ Sbjct: 477 IGVDYPRPIVDHSIANKECREKMGIAYSQN 506 >gi|163736265|ref|ZP_02143684.1| Deoxyribodipyrimidine photolyase [Phaeobacter gallaeciensis BS107] gi|161390135|gb|EDQ14485.1| Deoxyribodipyrimidine photolyase [Phaeobacter gallaeciensis BS107] Length = 479 Score = 341 bits (874), Expect = 2e-91, Method: Composition-based stats. Identities = 152/475 (32%), Positives = 223/475 (46%), Gaps = 26/475 (5%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 + W+R DLR+ DN A AA + VI VFI + A + L + K Sbjct: 12 IWWVRRDLRLADNPA-LAAAVAAGVPVIPVFIFE---TLDEDLGAAPRFRLGLGLAHLAK 67 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ-H 129 L Q+G + + E L + + + R Y+ + RD ++++L+ Sbjct: 68 ELEQRGARLILRRGP----AQEVLTQLITETGAGAVHWTRAYDPQAIARDTGIKEQLKGQ 123 Query: 130 RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQA---DLRSLPVPAIRLTG 186 + KSF +L P ++ MY+VY+P+ K++ V +P PA T Sbjct: 124 GIAAKSFGGHLLFEPWTVETKTGGMYRVYSPYWKSVRDRDVDGLIAAPSRIPAPAHWPTS 183 Query: 187 PVTPSNIPRF-FDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245 S + +GE A L +F +V Y + RD PA+ TS L Sbjct: 184 DDLDSWQMAAAMRRGADVVAQYCRVGEDAAQERLAEFLDTRVADYKQDRDFPAVDATSGL 243 Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305 S L+ G +SPR+ W+ ++ KSGA +L E++WREF HLM P + + Sbjct: 244 SENLAWGEISPRRMWH----HGLEARRAGKSGAEHFLKEIVWREFAYHLMFHTPHILT-R 298 Query: 306 PFIPWTEKIEW-NKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364 + P E W +D + AW++G TG+ +DAAMR+L G MHNR RMI ASFL K Sbjct: 299 NWRPEWEHFNWSERDDDKVDAWRRGQTGYNFVDAAMRELYVTGKMHNRARMIVASFLTKH 358 Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424 +L WRIG+++F L+D D ASN GWQW A +G D+ P+FRIFNP Q ++FDP+G + Sbjct: 359 MLTHWRIGQQWFEECLVDWDPASNAMGWQWVAGSGPDASPFFRIFNPDGQLEKFDPKGRY 418 Query: 425 IRHWLPELNNVPTQ-----YIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQY 474 W+ E P Q Y P SW + P +D K+ L Y Sbjct: 419 QSAWIAEGQANPPQTALDFYRATPLSWELSPQDTRA--EPFLDLKEGRARALEAY 471 >gi|167526345|ref|XP_001747506.1| hypothetical protein [Monosiga brevicollis MX1] gi|163773952|gb|EDQ87586.1| predicted protein [Monosiga brevicollis MX1] Length = 486 Score = 341 bits (874), Expect = 2e-91, Method: Composition-based stats. Identities = 128/486 (26%), Positives = 200/486 (41%), Gaps = 44/486 (9%) Query: 5 TAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYAS 64 ++ S+ L W R R+ DN AL+ A + +V VF+ P + + + +F+ S Sbjct: 2 SSSSISLHWFRKGQRLHDNPALWRALRGA-TQVYPVFVIDPHFAKPENVGVLRYNFLLES 60 Query: 65 LLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLE 124 L + + L G + E L + +VT+L Y E RD + Sbjct: 61 LKDLDEQLRGLGSRLYVLRGKPE----EQLPKKFKEWKVTRLTYELDTEPYARVRDAAIN 116 Query: 125 KRLQ-HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIR 183 + H V + +L P S L K +S VP ++ Sbjct: 117 DLAKKHNVEVIAEAGHMLHDPESYLKKCGGASK--------------DRQDKSYDVPTLK 162 Query: 184 LTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVY--YYVEQRDIPAI-- 239 G +FP GE+ AL L F K+K + + + + PA Sbjct: 163 EMGYSPIKAPQMV----------LFPGGEREALKRLEHFIKKKNWIATFEKPKTNPAALD 212 Query: 240 QGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYP 299 T+ LSPY+ +G LS R+ W +++ + D + S +L++RE + Sbjct: 213 PDTTGLSPYMKMGCLSVRKFWYDVQKVY-DEKKDHSTPPESLHGQLLFRELFHLCGYAVK 271 Query: 300 SVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITAS 359 + K +I+W+ L AW+ TG+P IDA M QL GWMH+ R A Sbjct: 272 NFDKMKGNR-ICRQIDWDYSEKFLDAWENSKTGYPWIDACMAQLRHEGWMHHLARHAVAC 330 Query: 360 FLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRF 418 FL + DL W G F L+D D NN W W S + YFR+++P G+++ Sbjct: 331 FLTRGDLYQSWEHGARIFEKHLVDADWHLNNANWMW-LSCSSFFYQYFRVYSPIGFGQKY 389 Query: 419 DPQGTFIRHWLPELNNVPTQYIHAPHSWL------DKNDLSLNYPLPIVDHKKACHHTLN 472 D +G FIR +LP L ++P +YI+ P K + +YP PIVDH + Sbjct: 390 DKEGAFIRKYLPVLKDMPKKYIYEPWKAPKEVQQKAKCIIGKDYPEPIVDHSDVSETNKD 449 Query: 473 QYYAAK 478 + A Sbjct: 450 RMKACY 455 >gi|66910245|gb|AAH96780.1| Cry2b protein [Danio rerio] gi|197247271|gb|AAI64795.1| Cry2b protein [Danio rerio] Length = 639 Score = 341 bits (874), Expect = 2e-91, Method: Composition-based stats. Identities = 119/501 (23%), Positives = 202/501 (40%), Gaps = 35/501 (6%) Query: 7 MSVH-LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASL 65 MSV+ + W R LR+ DN AL A + +D + V+ P + + F+ SL Sbjct: 1 MSVNSVHWFRKGLRLHDNPALLEALNGADT-LRCVYFLDPWFAGASNLGVNRWRFLLQSL 59 Query: 66 LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125 + SL + + + + +V++L + E RD ++K Sbjct: 60 EDLDASLRKLNSCLFVIRG----QPADIFPRLFKEWKVSRLTFEFDSEPFGKERDAAIKK 115 Query: 126 -RLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL 184 + V L I+ + + L+ ++ D + Sbjct: 116 LACEAGVEVIVKISHTLYDLDRIIELNGGQSPLTYKRFQTLVSSMEPPDPPLSSPDRGMM 175 Query: 185 TGPVTPSNIPRFFDYPFQAIDPM-----------FPIGEQNALHILRKFC-KEKVYYYVE 232 VTP + Y ++ + +P GE AL + + + + E Sbjct: 176 GKCVTPISENHRDKYGVPLLEELGFDTEGLAPAVWPGGESEALKRMERHLGPDSTVAWQE 235 Query: 233 QRDIPAIQGTS------QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELI 286 + P + + LSPYL G LS R + +L + + + K + + S ++++ Sbjct: 236 NFERPKMNASPLMASPLGLSPYLRFGCLSCRLFYCKLTQLYKKVK-KNMNPSISLYDKIL 294 Query: 287 WREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTI 346 WREF+ P + P +I W++++ L W + TGFP IDA M QL Sbjct: 295 WREFFYTAATNNPRFDRMEG-NPICIRIPWDRNAEALAKWAEAKTGFPWIDAIMMQLRQE 353 Query: 347 GWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPY 405 GW+H+ R A FL + DL + W G + F LLD D + N G W S + + Sbjct: 354 GWIHHLARHAVACFLTRGDLWISWEEGMKVFEELLLDADWSVNAGSWL-CHSCSSFFQQF 412 Query: 406 FRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPH------SWLDKNDLSLNYPLP 459 F + P G+R DP G FIR +LP L + P +YI+ P K + ++YP P Sbjct: 413 FHCYCPVGFGRRIDPNGDFIRRYLPVLRDFPAKYIYDPWNAPHDVQLAAKCVIGVDYPKP 472 Query: 460 IVDHKKACHHTLNQYYAAKKQ 480 +V+H +A + + +Q Sbjct: 473 MVNHAEASRLNIERMRQIYQQ 493 >gi|218190281|gb|EEC72708.1| hypothetical protein OsI_06300 [Oryza sativa Indica Group] Length = 551 Score = 340 bits (873), Expect = 2e-91, Method: Composition-based stats. Identities = 130/500 (26%), Positives = 208/500 (41%), Gaps = 31/500 (6%) Query: 12 VWLRNDLRITDNKAL-YAACHNSDAKVIAVFIATPEQWRQHGISA---------RQSHFI 61 VW R LR+ DN AL A + A++ VF+ P + + F+ Sbjct: 17 VWFRKGLRVHDNPALDAARRGGAAARLYPVFVLDPRFLLPDQAAPSPGSARAGVARVRFL 76 Query: 62 YASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDK 121 SL + L + G + + D + + + KL + E + RDK Sbjct: 77 LESLSDLDARLRRLGSRLLLLRARDDGDVAGTVCAALKDWNIGKLCFESDTEPYALARDK 136 Query: 122 LLEK-RLQHRVICKSFDDSVLLPPGSIL-NHALQMYKVYTPFRKALIQNLVQADLRSLPV 179 + + S L P I+ + + Y F + + Sbjct: 137 KVMDFAAASGIDVFSPVSHTLFDPAEIIEKNGGRPPMTYQSFVAIAGEPPEPIMEEYSEL 196 Query: 180 PAIRLTGPVTPSNIPRFFDYPFQAID----PMFPIGEQNALHILRKFCKEKVY--YYVEQ 233 P + TG +PR + + I F GE AL +R+ +K + + + Sbjct: 197 PPVGDTGEYELLPVPRVEELGYGDISQEDLSPFRGGETEALKRMRESLHDKEWVAKFEKP 256 Query: 234 RDIPAI---QGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREF 290 + P+ T+ LSPYL G LS R ++ +++ + K + S +L+WR+F Sbjct: 257 KGDPSAFLKPATTVLSPYLKFGCLSSRYFYHCIQDVYRSTK-KHTNPPVSLTGQLLWRDF 315 Query: 291 YRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMH 350 + + P+ K ++I W ++ L AW+ G TG+P IDA M QL GWMH Sbjct: 316 FYTVAFGTPNFDQMKG-NKICKQIPWTENEELFPAWRDGRTGYPWIDAIMIQLRKWGWMH 374 Query: 351 NRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIF 409 + R A FL + DL + W G + F L+D D A NNG W W S + Y RI+ Sbjct: 375 HLARHSVACFLTRGDLFIHWEKGRDVFERLLIDSDWAINNGNWMW-LSCSSFFYQYHRIY 433 Query: 410 NPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWL------DKNDLSLNYPLPIVDH 463 +PT GK++DP G +IRH++P L ++P +YI+ P + + +YP P+VDH Sbjct: 434 SPTSFGKKYDPNGNYIRHFIPVLKDMPKEYIYEPWTAPLSIQKKANCIIGKDYPKPVVDH 493 Query: 464 KKACHHTLNQYYAAKKQSLL 483 A A + L Sbjct: 494 AIASKECKKMMGEAYASNRL 513 >gi|14517649|gb|AAK64295.1|AF159509_2 DNA-photolyase [[Brevibacterium] flavum] Length = 482 Score = 340 bits (873), Expect = 2e-91, Method: Composition-based stats. Identities = 154/499 (30%), Positives = 220/499 (44%), Gaps = 65/499 (13%) Query: 8 SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67 L+W R+DLR++DN AL A + VI +FI ++ I A + SL Sbjct: 21 PPTLLWFRDDLRLSDNAALKWAADHG--PVIGLFI---DETINRSIGAAARWWREQSLNA 75 Query: 68 VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127 + + LS G+ + +E L + V + +NR+Y D L+K L Sbjct: 76 LAQDLSFYGVPLLRRTG----NPLEILPKIVSEMEVKAVTWNRRYHQPLCEVDATLKKNL 131 Query: 128 QHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVP---AIR 183 + + I S +L P + YKV+TPF KA + ++ Sbjct: 132 RDQGIEVHSHPGFLLTEPWEVSTATGTPYKVFTPFSKAAWEVARGHAYETVKNNVTVPSH 191 Query: 184 LTGPVTPSNIPRFFDYPFQAIDPMFP--IGEQNALHILRKFCKEKVYYYVEQRDIPAIQG 241 LTGP + PF A + GE+NA L F + + Y + RD A Sbjct: 192 LTGPEGVELPIPEMEQPFWATTLVKECAPGEKNASEKLFDFLEH-LQDYPQARDSLARSA 250 Query: 242 TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSV 301 TS+LS +L G +S + W + G +L EL+WR+F H + P + Sbjct: 251 TSKLSAHLRFGEISIHRVW-------AETAAIDSEGTELFLKELLWRDFAWHRLYALPHM 303 Query: 302 CMGKPFIPWTEKIEWNKDS----------------------HLLQAWKQGYTGFPIIDAA 339 + W+ D L AW+ G TG P++DA Sbjct: 304 DTQN-VRMQFNRFGWSWDPSEKDKLNTPSTPLIPTKADQFHEDLAAWRAGKTGIPLVDAG 362 Query: 340 MRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTG 399 MR+L G MHNR+RM+ ASFL K+L + WR GEE+F L+D D ASN WQWAA +G Sbjct: 363 MRELWATGSMHNRVRMVVASFLTKNLQIHWRHGEEWFWETLVDADPASNAFNWQWAAGSG 422 Query: 400 NDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLP 459 +D+ PYFRIFNP Q K+FDP T+IR W+PE + +YP P Sbjct: 423 DDASPYFRIFNPVTQAKKFDPDETYIRRWVPEYG-------------------TPSYPDP 463 Query: 460 IVDHKKACHHTLNQYYAAK 478 IVD K++ L+ Y A K Sbjct: 464 IVDLKESRQIALDAYSAIK 482 >gi|254797170|ref|YP_003082010.1| deoxyribodipyrimidine photolyase [Neorickettsia risticii str. Illinois] gi|254590408|gb|ACT69770.1| deoxyribodipyrimidine photolyase [Neorickettsia risticii str. Illinois] Length = 469 Score = 340 bits (873), Expect = 2e-91, Method: Composition-based stats. Identities = 146/482 (30%), Positives = 231/482 (47%), Gaps = 37/482 (7%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 + +VW R D R DN AL+ A +I V+I +I SL+ + Sbjct: 6 IAVVWFRKDFRTDDNPALFEATKI--RSIIPVYIIDENNCSIRKPGKAARIWIAESLIDL 63 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLE-KRL 127 KSL +H ++I L + + + L++N Y+ + + D+ + + L Sbjct: 64 NKSLD-------HHLKIYSGNTITILKTLLSRYKAEALYWNTTYDPEQDKYDEQIRTEIL 116 Query: 128 QH--RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185 + +I ++F+ +L P + Y+++T F+ +++ ++ P IR Sbjct: 117 KDHPNIIIRNFNARLLWEPSELRKKNGDTYRLFTAFKNKVMEEKLEPRFPIPSPPKIRYC 176 Query: 186 --------GPVTPSNIPRFFDYPF-QAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDI 236 VTP I + D+ F Q I + I EQ+A +L++F +K+ Y RD Sbjct: 177 KEINIPELASVTPEKIIKDKDHCFEQGIYKQWKISEQDAHVLLQEFVDKKLDNYHIDRDY 236 Query: 237 PAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMA 296 P GTS LSPY++ G +SP + W L + +L EL+WREF +++ Sbjct: 237 PGKNGTSTLSPYINFGQISPNRIWFALVRFLPQSI--------QFLTELLWREFAYNILN 288 Query: 297 FYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMI 356 P + + W D + W +G TG+PI+DA +R+L + G+MHNR+RMI Sbjct: 289 TNPELGSQN-LQQKFDYFPWENDKQKFKLWSRGETGYPIVDAGIRELLSTGYMHNRVRMI 347 Query: 357 TASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGK 416 SFL K+LL+ W+ GEE+F L+D D ASN WQW A +G DSVPYFRIF+PT Q K Sbjct: 348 VGSFLTKNLLIHWKYGEEFFWEYLVDADPASNTFNWQWIAGSGADSVPYFRIFSPTTQTK 407 Query: 417 RFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYA 476 +FDPQ + WLPE + +H +K + P+V+ K + L + Sbjct: 408 KFDPQLQYSDKWLPEYRSTCFTPVH----LQEKCRTPV---EPVVEEKVSRKKALTAFRI 460 Query: 477 AK 478 A Sbjct: 461 AN 462 >gi|125986217|ref|XP_001356872.1| GA15376 [Drosophila pseudoobscura pseudoobscura] gi|54645198|gb|EAL33938.1| GA15376 [Drosophila pseudoobscura pseudoobscura] Length = 533 Score = 340 bits (873), Expect = 3e-91, Method: Composition-based stats. Identities = 129/508 (25%), Positives = 206/508 (40%), Gaps = 38/508 (7%) Query: 1 MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDA-----KVIAVFIATPEQWRQHGISA 55 M A A VH W R LR+ DN AL ++A V +FI P + A Sbjct: 1 MDAKHATLVH--WFRKGLRVHDNPALTQIFSAANAAPEKFHVRPIFILDPGILDWMQVGA 58 Query: 56 RQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEIN 115 + F+ +L + + L + + D S+ ++ L + E Sbjct: 59 NRWRFLQQTLHDLDQQLRKLNSRLFVVRGKPVDVFPRVFKSWRVEL----LTFETDIEPY 114 Query: 116 EVRRDKLLEKRLQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADL 174 ++RD ++K + I + + P ++ + + +++ L + Sbjct: 115 ALQRDAAVQKLAKAEGIKVDTHCSHTIYNPELVIAKNMGKAPITYQKFLSVVDQLKVPKV 174 Query: 175 RSLPVPAIRLTGPVTPS------------NIPRFFDYPFQAIDPMFPIGEQNALHILRKF 222 LP + P + + P FP GE L +++ Sbjct: 175 LELPEKLAKKALPPKDEVEQQDDNAYDCPTLEQLVKRPEDLGPNKFPGGETEGLRRMKES 234 Query: 223 CKEKVY--YYVEQRDIPA--IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGA 278 +++++ + + P T+ LSPYL G LS R +LK + K Sbjct: 235 LRDELWVARFEKPNTAPNSLEPSTTVLSPYLKFGCLSARLFHQQLK-AILKRQSKHSQPP 293 Query: 279 FSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDA 338 S + +L+WREFY + A P+ + +I W + + L+AW G TG+P IDA Sbjct: 294 VSLIGQLLWREFYYTVAAAEPNFDRMLG-NVYCLQIPWQEQADHLEAWTHGRTGYPFIDA 352 Query: 339 AMRQLNTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAAS 397 MRQL GW+H+ R A FL + DL + W G+ F LLD D A N G W W S Sbjct: 353 IMRQLRQEGWIHHLARHAVACFLTRGDLWISWEEGQRVFEQLLLDQDWALNAGNWMW-LS 411 Query: 398 TGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND------ 451 YFR+++P GK+ DPQG +IR ++PEL P I+ P + Sbjct: 412 ASAFFHQYFRVYSPVAFGKKTDPQGHYIRKYVPELAKYPNGCIYEPWKATLADQREYGCV 471 Query: 452 LSLNYPLPIVDHKKACHHTLNQYYAAKK 479 L ++YP IV H+ + + AA K Sbjct: 472 LGVDYPHRIVKHELVHKENIKRMSAAYK 499 >gi|260800305|ref|XP_002595074.1| hypothetical protein BRAFLDRAFT_60127 [Branchiostoma floridae] gi|229280316|gb|EEN51085.1| hypothetical protein BRAFLDRAFT_60127 [Branchiostoma floridae] Length = 507 Score = 340 bits (873), Expect = 3e-91, Method: Composition-based stats. Identities = 128/494 (25%), Positives = 201/494 (40%), Gaps = 31/494 (6%) Query: 10 HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHG--ISARQSHFIYASLLQ 67 + W R LR DN +L A S V V++ ++H A F+ L + Sbjct: 9 TIHWFRKGLRFHDNPSLLHALRTS-RHVYPVYVVDQNWMKEHDIRYGANWWRFVIQCLEE 67 Query: 68 VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127 + L + G+ + S D + + +VT+L ++ E RD + K Sbjct: 68 LDTRLRKYGLRLFVVRGSAEDF----FKEHFRKWKVTQLTHDVDTEPFYRIRDVAVRKIA 123 Query: 128 QH-RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 V + L + + + + + Sbjct: 124 SDMGVEVVTHVAHTLYDIDRTVERNGGTPPLTYRKFLKVYNEMGKPPKEKETATTEHFAN 183 Query: 187 PVTPS--------NIPRFFDYPFQ-AIDPMFPIGEQNALHILRKFCKEKVY--YYVEQRD 235 P ++ + + F GE AL L K ++K + + + + Sbjct: 184 CTLPPEALQDKKFDMVTLEELGMRCDFPAKFVGGETEALRRLEKSLEDKDWVLKFEKPKT 243 Query: 236 IPA--IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRH 293 P + T+ LSPY+++G LS R +++L + + + S +LIWREF+ Sbjct: 244 SPNSLLPSTTVLSPYITVGCLSARLFYHQLDKIYSKAKNHSQP-PVSLHGQLIWREFFYT 302 Query: 294 LMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRL 353 A P+ + +I WNK+ L W+ TGFP IDAAM QL GW+H+ Sbjct: 303 AAAHTPNFNQMEGNRV-CLQIPWNKNDEHLTRWRNAQTGFPWIDAAMTQLRKEGWIHHLA 361 Query: 354 RMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPT 412 R A FL + DL + W G + F LLD D + N G W W S YFR+++P Sbjct: 362 RHAVACFLTRGDLWISWEEGMKVFEELLLDADWSLNAGNWMW-LSASAFFHQYFRVYSPI 420 Query: 413 IQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWL------DKNDLSLNYPLPIVDHKKA 466 + GK+ DP+GTFIRH+LP L N P +YI+ P + +YP PIVDHK+A Sbjct: 421 VFGKKTDPKGTFIRHYLPVLKNFPKEYIYEPWKAPRNVQEKAGCIVGKDYPRPIVDHKEA 480 Query: 467 CHHTLNQYYAAKKQ 480 L+ +K Sbjct: 481 SQRNLDIMRDVRKD 494 >gi|195119085|ref|XP_002004062.1| GI19664 [Drosophila mojavensis] gi|193914637|gb|EDW13504.1| GI19664 [Drosophila mojavensis] Length = 532 Score = 340 bits (872), Expect = 3e-91, Method: Composition-based stats. Identities = 130/498 (26%), Positives = 198/498 (39%), Gaps = 36/498 (7%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAK-----VIAVFIATPEQWRQHGISARQSHFIYASL 65 + W R LR+ DN AL + + A V +F+ P + A + F+ SL Sbjct: 9 IHWFRKGLRVHDNPALIQIFNKAGASPDKFSVRPIFVLDPGILDWMKVGANRWRFLQQSL 68 Query: 66 LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125 L + K+L + + D D + ++ L + E V+RDK ++ Sbjct: 69 LDLDKNLKELNSRLYIVRGKPVDIFPNLFDRWNVEL----LTFETDIEPYAVKRDKAVQD 124 Query: 126 -RLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL 184 H V + + P ++ + ++++ L + P Sbjct: 125 IAAAHGVKVDTHCSHTIYNPEIVIAKNFGRAPITYQKFLSVVEKLKLPKVLDKPQRLPNG 184 Query: 185 TGPVTPSNIPRFFD-YPFQAIDPM-----------FPIGEQNALHILRKFCKEKVY--YY 230 P+ D Y +D + FP GE+ AL L ++ + + Sbjct: 185 VQPIADELEMGQSDVYECPTLDQLVKRPQELGINKFPGGEREALRRLDTSLSDEHWVASF 244 Query: 231 VEQRDIPA--IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWR 288 + P T+ LSPYL G LS R RL E + K S + +L+WR Sbjct: 245 EKPNTAPNSLEPSTTVLSPYLKFGCLSARLVHQRLHE-ILKRHPKHSKPPVSLVGQLLWR 303 Query: 289 EFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGW 348 EFY A P+ + +I W + L AW G TG+P IDA MRQL GW Sbjct: 304 EFYYTAAAVEPNFDRMLG-NVYCLQIPWQERPDHLDAWAHGRTGYPFIDAIMRQLRQEGW 362 Query: 349 MHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFR 407 +H+ R A FL + DL + W G+ F LLD D A N G W W S YFR Sbjct: 363 IHHLARHAVACFLTRGDLWISWEEGQRVFEELLLDHDWALNAGNWMW-LSASAFFHQYFR 421 Query: 408 IFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND------LSLNYPLPIV 461 +++P GK+ D G +IR ++PEL P I+ P + L ++YP IV Sbjct: 422 VYSPVAFGKKTDRTGAYIRKYVPELAKYPAGCIYEPWKATLADQREFGCVLGIDYPHRIV 481 Query: 462 DHKKACHHTLNQYYAAKK 479 +H + + AA K Sbjct: 482 NHDIVHKENIKRMSAAYK 499 >gi|145294801|ref|YP_001137622.1| hypothetical protein cgR_0748 [Corynebacterium glutamicum R] gi|140844721|dbj|BAF53720.1| hypothetical protein [Corynebacterium glutamicum R] Length = 482 Score = 340 bits (871), Expect = 4e-91, Method: Composition-based stats. Identities = 154/499 (30%), Positives = 220/499 (44%), Gaps = 65/499 (13%) Query: 8 SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67 L+W R+DLR++DN AL A + VI +FI ++ I A + SL Sbjct: 21 PPTLLWFRDDLRLSDNAALKWAADHG--PVIGLFI---DETINRSIGAAARWWREQSLNA 75 Query: 68 VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127 + + LS G+ + +E L + V + +NR+Y D L+K L Sbjct: 76 LAQDLSFYGVPLLRRTG----NPLEILPKIVSEMEVKAVTWNRRYHQPLCEVDATLKKNL 131 Query: 128 QHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVP---AIR 183 + + I S +L P + YKV+TPF KA + ++ Sbjct: 132 RDQGIEVHSHPGFLLTEPWEVSTATGTPYKVFTPFSKAAWEVARGHAYETVKNNVTVPSH 191 Query: 184 LTGPVTPSNIPRFFDYPFQAIDPMFP--IGEQNALHILRKFCKEKVYYYVEQRDIPAIQG 241 LTGP + PF A + GE+NA L F + + Y + RD A Sbjct: 192 LTGPEGVELPIPEMEQPFWATTLVKECAPGEKNASEKLFDFLEH-LQDYPQARDSLARSA 250 Query: 242 TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSV 301 TS+LS +L G +S + W + G +L EL+WR+F H + P + Sbjct: 251 TSKLSAHLRFGEISIHRVW-------AETAAIDSEGTELFLKELLWRDFAWHRLYALPHM 303 Query: 302 CMGKPFIPWTEKIEWNKDS----------------------HLLQAWKQGYTGFPIIDAA 339 + W+ D L AW+ G TG P++DA Sbjct: 304 DTQN-VRMQFNRFGWSWDPSEKDKLNTPSTPLIPTKADQFHEDLAAWRAGKTGIPLVDAG 362 Query: 340 MRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTG 399 MR+L G MHNR+RM+ ASFL K+L + WR GEE+F L+D D ASN WQWAA +G Sbjct: 363 MRELWATGSMHNRVRMVVASFLTKNLQIHWRHGEEWFWETLVDADPASNAFNWQWAAGSG 422 Query: 400 NDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLP 459 +D+ PYFRIFNP Q K+FDP T+IR W+PE + +YP P Sbjct: 423 DDASPYFRIFNPVTQAKKFDPDETYIRRWVPEYG-------------------TPSYPDP 463 Query: 460 IVDHKKACHHTLNQYYAAK 478 IVD K++ L+ Y A K Sbjct: 464 IVDLKESRQIALDAYSAIK 482 >gi|119715025|ref|YP_921990.1| deoxyribodipyrimidine photo-lyase type I [Nocardioides sp. JS614] gi|119535686|gb|ABL80303.1| deoxyribodipyrimidine photo-lyase type I [Nocardioides sp. JS614] Length = 453 Score = 340 bits (871), Expect = 4e-91, Method: Composition-based stats. Identities = 153/472 (32%), Positives = 227/472 (48%), Gaps = 24/472 (5%) Query: 8 SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67 + ++W R DLR+ DN AL A +D V+ +F+ P W A + ++ ASL Sbjct: 5 TPAVLWFRRDLRLADNPALVEAA--ADGPVLPLFVLDPVLWG--PAGAARRAYLGASLRA 60 Query: 68 VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127 + SL ++G + D + ++ + RRD +E+ L Sbjct: 61 LDASLRERGTRLSVVRG----DPARLVPRAARAVGAARVHVAADFGPYGSRRDGAVEQAL 116 Query: 128 -QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 + PG + N A Y+V+TPF +A ++ + PV TG Sbjct: 117 TGAGAELVRTGSPYAVAPGRVTNTAGAPYRVFTPFHRAWAEHGWRG-----PVGVPEGTG 171 Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246 + + P P + A ++V Y E RD PA+ GTSQ+S Sbjct: 172 WLRLAEGTAEIPDPALPDGLTLPAAGEAAARRRWAEFLDRVDEYAEDRDRPAVDGTSQMS 231 Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP 306 +L G + PR DL + +GA ++ EL WREFY ++ P Sbjct: 232 AHLKWGEIHPRTML-------ADLARRRGAGAATYRKELAWREFYADVLHARPETARQY- 283 Query: 307 FIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLL 366 P ++ +++ L AW+ G TGF ++DA MRQL GWMHNR+RMITASFLVKDL Sbjct: 284 LRPEFARMRYDEPGEHLDAWRHGRTGFSVVDAGMRQLRATGWMHNRVRMITASFLVKDLH 343 Query: 367 VDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIR 426 ++W++G +F+ L+DGDLASN GWQW A G D+ PYFR+FNPT QG+RFDP+G ++R Sbjct: 344 LEWQLGARHFLRWLVDGDLASNQHGWQWTAGCGTDAAPYFRVFNPTAQGRRFDPRGEYVR 403 Query: 427 HWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478 W+PEL + + PH ++ YP PIVDH L ++ + Sbjct: 404 RWVPELAD--PDVVADPHDPSPSERQAVGYPEPIVDHAAERREALGRWERIR 453 >gi|146340206|ref|YP_001205254.1| deoxyribodipyrimidine photo-lyase [Bradyrhizobium sp. ORS278] gi|146193012|emb|CAL77021.1| Deoxyribodipyrimidine photo-lyase (DNA photolyase) (Photoreactivating enzyme) [Bradyrhizobium sp. ORS278] Length = 415 Score = 340 bits (871), Expect = 4e-91, Method: Composition-based stats. Identities = 135/417 (32%), Positives = 210/417 (50%), Gaps = 17/417 (4%) Query: 73 SQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH-RV 131 G + + + L + + +++N + R +E L H V Sbjct: 2 QSLGSDLVIRRGP----AAQVLGQLARETNASAVYWNDVAQAGPRRVAASVEADLDHIGV 57 Query: 132 ICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPV--PAIRLTGPVT 189 + F D +L+ P ++ + +V+TPF K ++ P P + +T Sbjct: 58 ASRVFPDDLLVDPATMSGKDGRGPRVFTPFWKRVLALGDPPKPLPTPARLPMVPDVTGLT 117 Query: 190 PSNIPRFFDYPFQA--IDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSP 247 ++ P A + + GE+ A LR F + V Y RD P I TS+LSP Sbjct: 118 VDDLRLEPTKPDWAGGLRATWQAGERAAQQRLRSFLESTVSGYAADRDRPDIDATSRLSP 177 Query: 248 YLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPF 307 +L G ++PRQ W+ + + + K G +L+E+ WREF RHL+ P + + Sbjct: 178 HLRFGEITPRQIWHAARFAAEERPAQAK-GIDKFLSEIGWREFSRHLLYNNPDLA-SRNL 235 Query: 308 IPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLV 367 P + W +D L AW++G TG+PI+DA +R+L G MHNR+RM+ AS LVK LL+ Sbjct: 236 QPSFDPFPWVQDDAALAAWQRGRTGYPIVDAGLRELWHTGSMHNRVRMVAASLLVKHLLI 295 Query: 368 DWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRH 427 DWR GE++F L+D D SN WQW A +G D+ PYFR+FNP +QG++FD G+++R Sbjct: 296 DWRQGEQWFWDTLVDADPGSNPASWQWVAGSGADAAPYFRVFNPVLQGEKFDANGSYVRR 355 Query: 428 WLPELNNVPTQYIHAPHSW----LDKNDLSLN--YPLPIVDHKKACHHTLNQYYAAK 478 W+PEL +P IH P + L + ++L YP PI+DHK+ L Y + + Sbjct: 356 WVPELARLPAGVIHQPWAAKPLELAEAGVTLGRSYPTPIIDHKQGRERALAAYASLR 412 >gi|87300679|ref|ZP_01083521.1| Deoxyribodipyrimidine photolyase [Synechococcus sp. WH 5701] gi|87284550|gb|EAQ76502.1| Deoxyribodipyrimidine photolyase [Synechococcus sp. WH 5701] Length = 499 Score = 339 bits (870), Expect = 5e-91, Method: Composition-based stats. Identities = 177/495 (35%), Positives = 234/495 (47%), Gaps = 39/495 (7%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 L W R DLR+ DN L A + A V VF+ P +S + F+ SL ++Q Sbjct: 7 LFWHRRDLRLADNLGLAA-AARATAAVTGVFVFDPALLDAPDLSPARLWFLSESLRELQG 65 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130 + G + D E L + +NR E + RD+ + + L+ Sbjct: 66 RWREAGSRLLLLRG----DPAEVLPQLAQAAGAQVVAWNRDVEPDGRARDRRVAEALRAG 121 Query: 131 V-ICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQ-----ADLRSLPVPAIRL 184 + D +L+PP ++ A Y+VY PF ++ + + Q + P I L Sbjct: 122 GCKLLADWDQLLVPPDALATGAGDPYRVYGPFFRSWRRRIEQAGAEACAPVAAPASLIDL 181 Query: 185 TGPVTPSNIPRFFDY-----------------PFQAIDPMFP-IGEQNALHILRKFCKEK 226 P+ R +D PF D GE A L F Sbjct: 182 DPAALPAERRRLWDQLNWLETVPTPGDGLPGAPFAGADLCPCRPGEAAAAAQLAAFADGP 241 Query: 227 VYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPK-SGAFSWLNEL 285 + Y R++PA GTS LS L G LSPRQ W +++ + + W EL Sbjct: 242 LLGYEPGRNLPAEPGTSGLSAALRFGTLSPRQAWAAAQQQRPRARSEEELQSITVWEQEL 301 Query: 286 IWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNT 345 WREFY+ + +P + G P+ P W D AW G TG PI+DAAMRQLN Sbjct: 302 AWREFYQQALFHFPELAEG-PYRPQWRHFPWENDEGRFAAWCDGLTGVPIVDAAMRQLND 360 Query: 346 IGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPY 405 GWMHNR RMI ASFLVKDL+VDWR GE FM L+DGDLA+NNGGWQW+AS+G D P Sbjct: 361 SGWMHNRCRMIVASFLVKDLIVDWRWGERQFMRLLVDGDLAANNGGWQWSASSGMDPKP- 419 Query: 406 FRIFNPTIQGKRFDPQGTFIRHWLPELNNVPT-QYIHAPHSWLDKNDLSLNYPLPIVDHK 464 RIFNP Q RFDP+ T+IR WLPEL+ V T I + L++ YP PIVDHK Sbjct: 420 LRIFNPYTQAARFDPEATYIRRWLPELSRVATADLIRGEIAPLERR----GYPGPIVDHK 475 Query: 465 --KACHHTLNQYYAA 477 +A L+ A Sbjct: 476 LQQARFKALHAASVA 490 >gi|307190470|gb|EFN74495.1| Cryptochrome-1 [Camponotus floridanus] Length = 525 Score = 339 bits (870), Expect = 5e-91, Method: Composition-based stats. Identities = 119/501 (23%), Positives = 182/501 (36%), Gaps = 37/501 (7%) Query: 10 HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69 + W R LR+ DN +L + VF+ P + + F+ L + Sbjct: 25 TVHWFRKGLRLHDNPSLKEGLAGASTF-RCVFVLDPWFAGSTNVGINKWRFLLQCLEDLD 83 Query: 70 KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH 129 SL + + + L + T L + E RD + + Sbjct: 84 CSLRKLNSRLFVIRG----QPADALPKLFKEWGTTNLTFEEDSEPFGRVRDHNISALCKE 139 Query: 130 RVI-CKSFDDSVLLPPGSIL-NHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187 I L I+ + + Y F+ + S A Sbjct: 140 LGISVVQKVSHTLYKLDEIIERNNGKPPLTYHQFQNIVASMNPPEPPVSTVTAACIGNAY 199 Query: 188 VTPSNIP-------RFFDYPFQA---IDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIP 237 + + F + P++ GE AL L + + K + R Sbjct: 200 TPLKDDHDDHYGVPTLEELGFDTEGLLPPVWVGGESEALARLERHLERKAWVASFGRPKM 259 Query: 238 AIQGT----SQLSPYLSIGVLSPRQCWNRLKEEFVDLL-------IKPKSGAFSWLNELI 286 Q + LSPYL G LS R + +L + + + IK S +L+ Sbjct: 260 TPQSLLPSQTGLSPYLRFGCLSTRLFYYQLTDLYKKVQDDCNPIVIKKAVPPLSLHGQLL 319 Query: 287 WREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTI 346 WREF+ + + P +I W+K+ L W G TGFP IDA M QL Sbjct: 320 WREFFYCAATKNSNFDRMQG-NPICVQIPWDKNVEALAKWANGQTGFPWIDAIMTQLREE 378 Query: 347 GWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPY 405 GW+H+ R A FL + DL + W G + F LLD D + N G W W S + + Sbjct: 379 GWIHHLARHAVACFLTRGDLWISWEEGMKVFDELLLDADWSVNAGMWMW-LSCSSFFQQF 437 Query: 406 FRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPH------SWLDKNDLSLNYPLP 459 F + P G++ DP G +IR +LP L N PT+YIH P K + Y LP Sbjct: 438 FHCYCPVRFGRKADPNGDYIRRYLPVLKNFPTRYIHEPWNAPLSIQHAAKCVIGKEYSLP 497 Query: 460 IVDHKKACHHTLNQYYAAKKQ 480 +V+H K + + +Q Sbjct: 498 MVNHNKTSRINIERMKQVYQQ 518 >gi|224002945|ref|XP_002291144.1| Cryptochrome/Photolyase family 1 [Thalassiosira pseudonana CCMP1335] gi|220972920|gb|EED91251.1| Cryptochrome/Photolyase family 1 [Thalassiosira pseudonana CCMP1335] Length = 556 Score = 339 bits (870), Expect = 5e-91, Method: Composition-based stats. Identities = 134/510 (26%), Positives = 204/510 (40%), Gaps = 45/510 (8%) Query: 9 VHLVWLRNDLRITDNKALYAAC---HNSDAKVIAVFIATPEQWRQHGISARQSHFIYASL 65 V + W R LR+ DN AL A ++ + V+I P ++ S ++ F+ + Sbjct: 14 VAMHWFRKGLRVHDNPALLHALAITKDTSGPIYPVYIVDPNCYQLLKCSVLRARFLLECI 73 Query: 66 LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQY--EINEVRRDKLL 123 + KSL ++G D +E L + VT + + E V RD+ + Sbjct: 74 SDLDKSLRERGSRLYVATG----DPLEVLPELWKEWGVTHVTHEADETGEPYAVARDEGV 129 Query: 124 EK-RLQHRVICKSFDDSVLLPPGSIL-----------NHALQMYKVYTPFRKALIQNLVQ 171 ++ V F L P G++ N + + + Sbjct: 130 RSVAKKNGVQVMEFRSETLRPLGNVPGGYVANVGGAVNSVPSTMSSFQGLLGRIDGGNIP 189 Query: 172 ADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMF----PIGEQNALHILRKFCK--- 224 L + SN ++P D GE AL L+ Sbjct: 190 LPLDAPTKEEFPQLSDDDDSNKYLPLEHPSDCEDASLTGIVKGGETLALAQLQSTVTARP 249 Query: 225 EKVYYYVEQRDI---PAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIK--PKSGAF 279 + + + + + T+ LSPYLS+G LSPR+ W+ + + K Sbjct: 250 DWTASFEKPKTSCTEVSTPSTTVLSPYLSLGCLSPRKAWHAVADANRKASSKVNKTKPPV 309 Query: 280 SWLNELIWREF----YRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPI 335 S +L+WR+F A P P+ + W+ D LL+AWK G TGFP Sbjct: 310 SLHGQLLWRDFNNLIAHSANAQSPGSWGRMQDNPYCRNVPWSSDPKLLKAWKDGKTGFPW 369 Query: 336 IDAAMRQLNTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQW 394 IDA M QL T GW+H+ R A FL + DL W +G ++F +LLD D A NN W W Sbjct: 370 IDACMAQLRTEGWIHHLGRHAVACFLTRGDLWQSWEMGADHFEGELLDADYALNNFNWLW 429 Query: 395 AASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKN---- 450 + +G YFR ++P K+ D G +IR W+PEL +P +YI+ P Sbjct: 430 LSCSGFF-YQYFRCYSPVAFQKKNDVNGNYIRKWVPELAGLPAKYIYEPWKAPSSVLNAA 488 Query: 451 --DLSLNYPLPIVDHKKACHHTLNQYYAAK 478 L NYP PIVDH +++ A Sbjct: 489 GIKLGDNYPNPIVDHAFVSKENMSKMSLAY 518 >gi|86136341|ref|ZP_01054920.1| DNA photolyase, Cryptochrome 1 apoprotein (Blue lightphotoreceptor) [Roseobacter sp. MED193] gi|85827215|gb|EAQ47411.1| DNA photolyase, Cryptochrome 1 apoprotein (Blue lightphotoreceptor) [Roseobacter sp. MED193] Length = 470 Score = 339 bits (870), Expect = 5e-91, Method: Composition-based stats. Identities = 146/476 (30%), Positives = 219/476 (46%), Gaps = 24/476 (5%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 ++W R D R+ D++AL+AA NS+ VI V + E + +G + + ++ Sbjct: 8 IIWFRKDFRLADHQALFAAS-NSERPVIPVVVLD-ELTQTYGAAP--KWRLSKAIEHFAD 63 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130 L+Q G + + + L + + +++ R Y+ + + RD ++ L Sbjct: 64 RLNQVGSRLILRRGP----AAQELLALAQETGAGDIWWTRAYDPDAIARDTKVKSTLTDA 119 Query: 131 V-ICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189 KS+ +L P ++ +KVY+P +A+ V A + T PV+ Sbjct: 120 GFKAKSWPGQLLFEPWAVKTKQGGFFKVYSPMWRAVKDLDVAAPSPAPKFLMAPETWPVS 179 Query: 190 PSNIPRFFDYPFQA----IDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245 D Q + +GE A L +F + Y E+RD PA+ TS L Sbjct: 180 DPLQGWQLDKGMQRGARILSAHACVGEVAANTRLAQFLDVAIDGYKERRDYPALNATSGL 239 Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305 S L+ G + P W+ ++ + GA +L EL+WREF HL P + Sbjct: 240 SENLAWGEIGPATVWHAGLRAHLE----GQRGAEHFLKELVWREFAYHLAFHTPKITQEN 295 Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365 W + + + WKQG TG P++DAAMR+L G MHNR RMI ASFL K + Sbjct: 296 WKSQWNDFPWSEHEDEAVLRWKQGRTGVPLVDAAMRELYVTGHMHNRSRMIVASFLTKHM 355 Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425 L WRIG+++F L+D D A+N GWQW A G D+ PYFRIFNP Q K+FD + +I Sbjct: 356 LKHWRIGQKWFEDCLIDWDPAANAMGWQWVAGCGPDAAPYFRIFNPETQAKKFDAEQQYI 415 Query: 426 RHWLPELNNVPTQYIHA-----PHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYA 476 + +L E P A P +W D YP PIV + H L Y A Sbjct: 416 QRFLAERAPTPGPEALAFFDACPRAWALSKDDP--YPTPIVGLAEGRHRALTAYAA 469 >gi|296271918|ref|YP_003654549.1| deoxyribodipyrimidine photo-lyase [Arcobacter nitrofigilis DSM 7299] gi|296096093|gb|ADG92043.1| Deoxyribodipyrimidine photo-lyase [Arcobacter nitrofigilis DSM 7299] Length = 443 Score = 339 bits (870), Expect = 6e-91, Method: Composition-based stats. Identities = 158/473 (33%), Positives = 238/473 (50%), Gaps = 32/473 (6%) Query: 10 HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69 ++W R DLRI DNK L A + V+ +FI + ++ FIY ++L ++ Sbjct: 3 QILWFRRDLRIIDNKILEKASNE----VLPIFIFDKNILEKLDFDDKRVTFIYDAVLALK 58 Query: 70 KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH 129 KSL + G+ F D+ + + + + ++ + ++ ++RDK + + L Sbjct: 59 KSLQELGLDLYI-----FFDTPKNVFTKLKNEGFDEVLCSCDFDSYSIKRDKQINEILP- 112 Query: 130 RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189 K + DS L+ P L YKV+TPF K+L + + L Sbjct: 113 ---LKRYLDSFLINPNKNLKKDGTPYKVFTPFYKSLSWLTSSDKIGEAMINP-NLKLSKY 168 Query: 190 PSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYL 249 + P + F+ + + +++ + L F KEKV Y + RDI GTS L L Sbjct: 169 ENKTPTLDELGFERV-TLPEFLKKSPQNRLDDF-KEKVKEYEKNRDIFYKDGTSNLGVDL 226 Query: 250 SIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIP 309 G LSPR +N +K+ K + +++ +L WREFY +++ +P+ Sbjct: 227 RFGTLSPRMIFNEIKK-------SDKENSEAFIRQLFWREFYNYILFHFPNSENENWNGI 279 Query: 310 WTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDW 369 I W++D Q W +G TG PIIDAAMR N G MHNRLRMI +SFL K+LL+DW Sbjct: 280 E---ISWSEDEEDFQKWCEGKTGVPIIDAAMRHFNKTGMMHNRLRMIVSSFLCKNLLIDW 336 Query: 370 RIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWL 429 + GE+YF +LLD + +SN G WQWAASTG DSVPYFRIFNP +Q +FD + FI+ + Sbjct: 337 KKGEQYFAKKLLDYEASSNIGSWQWAASTGADSVPYFRIFNPYLQSAKFDKEAIFIKSVM 396 Query: 430 PELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQSL 482 PEL +V + IH + DK Y IVD K + + + AK + Sbjct: 397 PELKDVDAKLIHIEGALKDK------YVNSIVDIKYSRDRAMRIFKEAKNAKV 443 >gi|330951089|gb|EGH51349.1| deoxyribodipyrimidine photolyase [Pseudomonas syringae Cit 7] Length = 367 Score = 339 bits (870), Expect = 6e-91, Method: Composition-based stats. Identities = 138/369 (37%), Positives = 205/369 (55%), Gaps = 6/369 (1%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 + L+WLR+DLR DN AL AA +AV++ +P QWR H + + F +L+++ Sbjct: 1 MQLIWLRSDLRAQDNTALTAAMERG--PTLAVYLLSPAQWRSHDDADCKVDFWLRNLVEL 58 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128 +K+L + + + +D + E L C Q +V L N++Y INE RRD+ ++K ++ Sbjct: 59 EKALGELNVPLLIREADTWDQAPEVLAKLCTQFKVEGLHLNQEYGINETRRDQAVQKAME 118 Query: 129 HRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187 + S+ D +L PGSIL ++V+T F+K L +A + P + Sbjct: 119 KAGVHFNSYLDQLLFKPGSILTKTGNYFQVFTQFKKVCYTRLHEAMPHPVRTPKAQPAQS 178 Query: 188 VTPS---NIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244 + + + F P +A+ ++P GE A + F E++ YY ++RD P GTSQ Sbjct: 179 IKSDPIPDQVKGFATPAKALRELWPAGEAEARRRMDAFADEQISYYKDERDFPTKPGTSQ 238 Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304 LS YL+ GV+SPRQC + G +W+NEL+WREFY+H + YP V Sbjct: 239 LSAYLAAGVISPRQCLHAALASNQGEFETGNVGTVTWINELLWREFYKHTLVGYPRVSRH 298 Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364 + F P TE ++W L+AW++ TG PIIDAAMRQL GWMHNRLRM+ A FL K+ Sbjct: 299 RAFRPETEALKWRDAPEELRAWQEARTGLPIIDAAMRQLLETGWMHNRLRMVVAMFLTKN 358 Query: 365 LLVDWRIGE 373 LL+DWR GE Sbjct: 359 LLIDWREGE 367 >gi|46390519|dbj|BAD16007.1| putative 6-4 photolyase (UVR3) [Oryza sativa Japonica Group] gi|51536259|dbj|BAD38427.1| putative 6-4 photolyase (UVR3) [Oryza sativa Japonica Group] Length = 560 Score = 339 bits (869), Expect = 7e-91, Method: Composition-based stats. Identities = 131/509 (25%), Positives = 210/509 (41%), Gaps = 40/509 (7%) Query: 12 VWLRNDLRITDNKAL-YAACHNSDAKVIAVFIATPEQWRQHGISA---------RQSHFI 61 VW R LR+ DN AL A + A++ VF+ P R + + F+ Sbjct: 17 VWFRKGLRVHDNPALDAARRGGAAARLYPVFVLDPRYLRPDQAAPSPGSARAGVARVRFL 76 Query: 62 YASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDK 121 SL + L + G + + D + + + KL + E + RDK Sbjct: 77 LESLSDLDARLRRLGSRLLLLRARDDGDVAGTVCAALKDWNIGKLCFESDTEPYALARDK 136 Query: 122 LLEK-RLQHRVICKSFDDSVLLPPGSIL----------NHALQMYKVYTPFRKALIQNLV 170 + + S L P I+ + + Y F + Sbjct: 137 KVMDFAAASGIDVFSPVSHTLFDPAEIIEKFLFSFGKWKNGGRPPMTYQSFVAIAGEPPE 196 Query: 171 QADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAID----PMFPIGEQNALHILRKFCKEK 226 +P + TG +PR + + I +F GE AL +R+ +K Sbjct: 197 PIMEEYSELPPVGDTGEYELLPVPRVEELGYGDISQEDLSLFRGGETEALKRMRESLHDK 256 Query: 227 VY--YYVEQRDIPAI---QGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSW 281 + + + + P+ T+ LSPYL G LS R ++ +++ + K + S Sbjct: 257 EWVAKFEKPKGDPSAFLKPATTVLSPYLKFGCLSSRYFYHCIQDIYRSTK-KHTNPPVSL 315 Query: 282 LNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMR 341 +L+WR+F+ + P+ K ++I W ++ L AW+ G TG+P IDA M Sbjct: 316 TGQLLWRDFFYTVAFGTPNFDQMKG-NKICKQIPWTENEELFPAWRDGRTGYPWIDAIMI 374 Query: 342 QLNTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGN 400 QL GWMH+ R A FL + DL + W G + F L+D D A NNG W W S + Sbjct: 375 QLRKWGWMHHLARHSVACFLTRGDLFIHWEKGRDVFERLLIDSDWAINNGNWMW-LSCSS 433 Query: 401 DSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWL------DKNDLSL 454 Y RI++PT GK++DP G +IRH++P L ++P +YI+ P + + Sbjct: 434 FFYQYHRIYSPTSFGKKYDPNGNYIRHFIPVLKDMPKEYIYEPWTAPLSIQKKANCIIGK 493 Query: 455 NYPLPIVDHKKACHHTLNQYYAAKKQSLL 483 +YP P+VDH A A + L Sbjct: 494 DYPKPVVDHAIASKECKKMMGEAYASNRL 522 >gi|124006560|ref|ZP_01691393.1| deoxyribodipyrimidine photolyase [Microscilla marina ATCC 23134] gi|123987973|gb|EAY27653.1| deoxyribodipyrimidine photolyase [Microscilla marina ATCC 23134] Length = 483 Score = 339 bits (869), Expect = 8e-91, Method: Composition-based stats. Identities = 131/474 (27%), Positives = 218/474 (45%), Gaps = 30/474 (6%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGIS-----ARQSHFIYA 63 V +VW RNDLR+ DN L A ++D ++ V+ P Q+ + A ++ F+ Sbjct: 14 VKIVWFRNDLRVHDNDVLAKAASDADY-LLPVYCFDPRQYETTSLGFAKTGAHRAQFLIE 72 Query: 64 SLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLL 123 +L ++ +L KG E + + ++ +++ E K L Sbjct: 73 TLANLRANLEAKGSGLVIR----IGKPEEVIADLAKATQAKAVYASQEIGTEEDATVKQL 128 Query: 124 EKRL-QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAI 182 EKRL +++V + L+ P + + V+T FRK + Q L + +LP Sbjct: 129 EKRLWKNQVFLELLWTGNLIHPADLPFPLNSLSNVFTDFRKEIEQGLKVREAVTLPDTLP 188 Query: 183 RLTGPVTPSNIPRFFDYPFQAIDP------MFPIGEQNALHILRKFCKEKV--YYYVEQR 234 L V ++P+ D P F GE L + + ++ +Y + R Sbjct: 189 LLPPGVEAGSLPKLTDLGLTHTTPDTRAVLHFKGGETAGLQRIEDYIWQRSLLQHYKDTR 248 Query: 235 D-IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRH 293 + + +++ SP+L+ G +S R ++ +K+ ++ + + EL+WRE++R Sbjct: 249 NGLLGADYSTKFSPWLANGAISARTVYHEIKKYEQQVV--KNKSTYHLVFELLWREYFRL 306 Query: 294 LMAFYPSVCMGKPFIPWTEKIEWNKDSHL-LQAWKQGYTGFPIIDAAMRQLNTIGWMHNR 352 + Y K I ++E + + + WK G TG P IDA MR+LN G+M NR Sbjct: 307 VARKYGHRIFVKGGIKAKGEVEMSSNRKRTFKRWKNGETGIPFIDANMRELNATGFMSNR 366 Query: 353 LRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPT 412 R AS+L KDL ++W G YF SQL+D D++SN W + A GND R F+ Sbjct: 367 GRQNVASYLTKDLKINWVHGAMYFESQLIDYDVSSNWCNWNYVAGVGNDPR-KDRYFDIL 425 Query: 413 IQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND------LSLNYPLPI 460 Q R+D +G +++HWLPEL ++P +H PH L +YP PI Sbjct: 426 SQANRYDNKGAYVKHWLPELASIPENKVHEPHQLKATEQQAYEMILGQDYPKPI 479 >gi|294678477|ref|YP_003579092.1| deoxyribodipyrimidine photo-lyase [Rhodobacter capsulatus SB 1003] gi|294477297|gb|ADE86685.1| deoxyribodipyrimidine photo-lyase [Rhodobacter capsulatus SB 1003] Length = 483 Score = 339 bits (869), Expect = 8e-91, Method: Composition-based stats. Identities = 149/483 (30%), Positives = 228/483 (47%), Gaps = 24/483 (4%) Query: 8 SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67 + L+WLR D R++D+ L AA S V+A+FI P A + +L Sbjct: 5 TPILLWLRRDFRLSDHPMLSAAAA-SGRPVLALFILDP---LAEAYGAAPKWRLEQALAA 60 Query: 68 VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127 +L+ G+ + ++ L + ++++R + + RD ++ L Sbjct: 61 FAPALAACGVPLVLRRGP----ALAVLRQVLAESGAGAVWWSRDLDPAAIARDTEVKTAL 116 Query: 128 Q-HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRS---LPVPAIR 183 + + +SFD +L P ++ Y+VYTP+ +A+ V L L + Sbjct: 117 RAEGLEARSFDGQLLFAPWAVQTGQGGPYRVYTPYWRAVRGLTVAPPLAPVTALRPGPVL 176 Query: 184 LTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS 243 + + R + +GE A L +F +E + Y +RD A TS Sbjct: 177 RGESLDALGLGRAMRRGGAVVAKYARVGEAAAQARLERFLREGIETYQARRDFLAENATS 236 Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCM 303 +LS +L+ G +SPR W+ + + ++GA ++L EL+WREF HLM +YP + Sbjct: 237 ELSEHLAWGEISPRVIWHAGAQAMAE----GRAGAETFLKELVWREFAWHLMFYYPRLAT 292 Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363 + P + W +S + W++G TG PI+DAAMR++ G MHNR RMI AS+L K Sbjct: 293 EN-WRPDWDSFPWAGESAAAERWRRGQTGEPIVDAAMREMYVTGRMHNRARMIVASYLTK 351 Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423 LL DWRIG +F L+D D A+N GWQW A G D+ PYFRIFNP Q ++FDP+G Sbjct: 352 HLLTDWRIGLAWFEDCLIDHDPAANAMGWQWVAGCGPDAAPYFRIFNPASQAEKFDPEGR 411 Query: 424 FIRHWLPELNNVPTQYIHA-----PHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478 + R WL E N Q P SW +L+ P++D L Y A Sbjct: 412 YRRAWLAEGNRHAPQTAQDFFAAVPRSWGLVPGAALS--APLIDLAAGRDRALAAYAARP 469 Query: 479 KQS 481 K Sbjct: 470 KTG 472 >gi|262201249|ref|YP_003272457.1| deoxyribodipyrimidine photo-lyase [Gordonia bronchialis DSM 43247] gi|262084596|gb|ACY20564.1| Deoxyribodipyrimidine photo-lyase [Gordonia bronchialis DSM 43247] Length = 434 Score = 338 bits (868), Expect = 9e-91, Method: Composition-based stats. Identities = 146/473 (30%), Positives = 215/473 (45%), Gaps = 49/473 (10%) Query: 10 HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69 ++WLR DLR+ D L AA N +V+ F+ P + R+ F++ SL ++ Sbjct: 6 SILWLRRDLRLGDLPPLSAAAANG--RVLVCFVVDPRLEKS--SGERRLAFLFDSLRELD 61 Query: 70 KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH 129 L + +V + + + + RRD + + L Sbjct: 62 TKLGGRLLVVSGRPDV-------EIPRLASAVDAGSVHVSEDFSPFGRRRDAAVAEALGE 114 Query: 130 RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189 + +S L+ PG I YKV+TP+ + + + + A + Sbjct: 115 -IPLESVGSPYLVSPGRITKSDGDPYKVFTPYFRQWCDHGWRKPAST----AAEDLNALD 169 Query: 190 PSNIPRF--FDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSP 247 P +I R P + P GE+ A +F + + Y R+ P + +S++S Sbjct: 170 PGDIRRSGRIRIPAAPVKLDLPAGEEAARERWSEFVVDDLDDYESGRNRPDLDVSSRMSA 229 Query: 248 YLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPF 307 YL G + PR L A ++L EL +R+FY ++ +P Sbjct: 230 YLKFGNIHPRTMAADLDFR--------NPSAAAYLRELAFRDFYADVLYHWPESAWHNWN 281 Query: 308 IPWTEKIEWNKDSHL---LQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364 + I+ + D AW+ G TGFPI+DA MRQL IG+MHNR+RMITASFLVKD Sbjct: 282 RG-FDDIDLDTDKQAYARFDAWRAGRTGFPIVDAGMRQLAAIGFMHNRVRMITASFLVKD 340 Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424 L + W G +F+ QL+DGD+ASN GWQWAA TG D+ PYFR+FNPT Q +FDP G + Sbjct: 341 LHLPWWWGARWFLDQLVDGDMASNQHGWQWAAGTGTDAAPYFRVFNPTTQADKFDPDGEY 400 Query: 425 IRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477 IR W+PE + +YP PIVDHK L +Y A Sbjct: 401 IRRWIPEYG-------------------TDDYPQPIVDHKAEREEALRRYRAL 434 >gi|72115950|ref|XP_788938.1| PREDICTED: similar to Cry5 protein [Strongylocentrotus purpuratus] gi|115955764|ref|XP_001189626.1| PREDICTED: similar to Cry5 protein [Strongylocentrotus purpuratus] Length = 559 Score = 338 bits (867), Expect = 1e-90, Method: Composition-based stats. Identities = 124/492 (25%), Positives = 200/492 (40%), Gaps = 31/492 (6%) Query: 10 HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69 + W R LRI DN AL A +FI P + + F+ +L + Sbjct: 41 TIHWFRKGLRIHDNPALLTAIQ-GTKVFRPIFILDPHFIESEKVGINRWRFLLETLQDLD 99 Query: 70 KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH 129 S G + + + VT+L + E RRD+ + + + Sbjct: 100 YSFRALGTRLFVVRG----NPTTVFPEIFKKWNVTRLTFEVDTEPYARRRDQEVIELAKK 155 Query: 130 R-VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188 V + L + + L+ + + LP TG Sbjct: 156 NDVEVITKVSHTLYDTERTIKANKYKPPMTYQRMVGLLSEIGAPAIPELPPLMANFTGVA 215 Query: 189 TPSNIPRFFDYPFQAIDPM-----------FPIGEQNALHILRKFCKEKVY--YYVEQRD 235 TP +Y +++ + +P GE L + K + + + + Sbjct: 216 TPVKPDHDNEYGVPSLEDLGLDLEGLGPRLYPGGETEGLQRMDLHLARKSWVCGFEKPKT 275 Query: 236 IPA--IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRH 293 P T+ LSPYL G LSPR+ + +KE + S + +LIWREF+ Sbjct: 276 SPNSLEPSTTVLSPYLKWGCLSPRKFYYAIKEVYAQ-QTNCTKPPVSLMGQLIWREFFYT 334 Query: 294 LMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRL 353 + A P+ + P ++ W+++ L AWK+G TG+P IDA M QL T GW+H+ Sbjct: 335 VAAGTPNFHQMEE-NPICIQVPWDENPEFLAAWKEGRTGYPYIDAIMTQLRTEGWIHHLA 393 Query: 354 RMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPT 412 R A FL + DL W G+E F LLD D + N W W +S+ Y+R+++P Sbjct: 394 RHSAACFLTRGDLWQSWVKGQEVFDEWLLDADYSLNAANWMWLSSSAFFHQ-YYRVYSPV 452 Query: 413 IQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDK------NDLSLNYPLPIVDHKKA 466 + GK+ D G +IR ++P LN +P +YI+ P + + +YP PIVDH Sbjct: 453 VFGKKTDKTGEYIRKYIPALNKLPAEYIYEPWTAPRSVQEAAGCIIGRDYPRPIVDHSIV 512 Query: 467 CHHTLNQYYAAK 478 + + A+ Sbjct: 513 SKRNIGRMKDAR 524 >gi|208780423|ref|ZP_03247764.1| deoxyribodipyrimidine photolyase family protein [Francisella novicida FTG] gi|208743791|gb|EDZ90094.1| deoxyribodipyrimidine photolyase family protein [Francisella novicida FTG] Length = 499 Score = 338 bits (867), Expect = 1e-90, Method: Composition-based stats. Identities = 127/483 (26%), Positives = 216/483 (44%), Gaps = 31/483 (6%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 + +VW + DLR+TDN AL A D ++ ++I PE W+Q +S RQ F+ L ++ Sbjct: 1 MQIVWFKRDLRVTDNLALSLAAEKGD--ILPLYIIEPELWQQPDMSHRQYLFLSECLEEL 58 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEV-RRDKLLEKRL 127 L++ G D++E + + + ++ +++ + +RD LEK Sbjct: 59 NTELTKLGQSLAIM----LGDAVEIFEQLIQKYNIKNVWSHQETWNDWTYQRDIKLEKFF 114 Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187 + I ++ K + + + + +++A + + ++ P Sbjct: 115 KQNNIVWHQPYQ-----NGVVRCLADRDKWALLWHQRMSEKIIRAPTKLKFICESQIKIP 169 Query: 188 VTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIP--AIQGTSQL 245 S + D + G AL IL F ++ Y ++ P A + S+L Sbjct: 170 TAESLGLEYDDCYKR-----QKGGRIRALRILDSFLYQRGCSYTKEMSSPVTAFKSCSRL 224 Query: 246 SPYLSIGVLSPRQCWNR-------LKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFY 298 SPY++ GV+S ++ + + +KE V K S S+L+ L W + + Sbjct: 225 SPYIAFGVISLKEIYQKANQRKNEIKESRVKNKTKWLSAMRSFLSRLRWHCHFMQKLEDQ 284 Query: 299 PSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITA 358 S+ + + + +AWK G TG+P+IDA MR L GW++ R+R + Sbjct: 285 RSIEYENLHSAYDQLRTEPLNQQCFEAWKTGNTGYPMIDACMRALIATGWLNFRMRAMLM 344 Query: 359 SFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRF 418 SF L +DWR+ Y D + + Q +G + RI+NP Q Sbjct: 345 SFASYHLWLDWRVTSLYLARLFTDYEPGIHYSQVQMQ--SGTTGINSIRIYNPIKQSIDQ 402 Query: 419 DPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478 DP G FIR WLPEL NV ++ IH P WL+K++ SL+YP PI+D K+A + Y + Sbjct: 403 DPNGEFIRRWLPELENVSSENIHTP--WLEKHN-SLDYPDPIIDEKQARKFAADNIYKIR 459 Query: 479 KQS 481 K S Sbjct: 460 KSS 462 >gi|149914833|ref|ZP_01903363.1| deoxyribodipyrimidine photolyase, putative [Roseobacter sp. AzwK-3b] gi|149811626|gb|EDM71461.1| deoxyribodipyrimidine photolyase, putative [Roseobacter sp. AzwK-3b] Length = 473 Score = 338 bits (866), Expect = 1e-90, Method: Composition-based stats. Identities = 151/467 (32%), Positives = 220/467 (47%), Gaps = 27/467 (5%) Query: 21 TDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQKSLSQKGIVFQ 80 +D+ AL AA VI VFI + A + SL + + L G Sbjct: 18 SDHTALGAAIARG-GPVIPVFILDD---LAEMLGAAPKWRLGLSLEDMSRRLEAMGSRLI 73 Query: 81 YHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHRVI-CKSFDDS 139 + D+ + L + + ++++R Y+ V RDK ++ L+ + +S++ Sbjct: 74 LRRG----DATQTLRALATETGAGAVYWSRAYDPESVARDKAVKAALKQDGLDARSYEGH 129 Query: 140 VLLPPGSILNHALQMYKVYTPFRKALIQNLVQAD-LRSLPVPAIRLTGPVTPSNIPRF-- 196 ++ P ++ A Y+VYTPF + + + V +PA + R Sbjct: 130 LMFEPWTVETGAGGFYRVYTPFWRTVKERDVPEPEPAPSHIPAPKDWPLSDALEDWRLAA 189 Query: 197 -FDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLS 255 D P +GE+ A L F + Y RD+PA GTS LS L++G +S Sbjct: 190 AMDRGAAICRPYQRVGEEAAQGRLGWFTGHAIGAYDTARDLPAEDGTSGLSENLALGEIS 249 Query: 256 PRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIE 315 PR+CW+ + K GA +WL EL+WREF HL P + + + + + Sbjct: 250 PRRCWHAGMRAMHE----GKPGAETWLKELVWREFAYHLAWHTPRI-VNRNWREDWDAFP 304 Query: 316 WNKDSHLLQA--WKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGE 373 WN+D Q WKQG TG P +DAAMR++ G MHNR RMI AS+L K LL WRIG+ Sbjct: 305 WNEDEDHPQVIAWKQGRTGIPFVDAAMREMYVTGRMHNRARMIVASYLTKHLLSHWRIGQ 364 Query: 374 EYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELN 433 ++F + L D D ASN GWQW+A +G D+ PYFR+FNP Q ++FDP+ ++ W+ E Sbjct: 365 KWFEACLTDWDPASNAMGWQWSAGSGPDATPYFRVFNPETQVQKFDPKSRYLDRWIAEGR 424 Query: 434 NVPTQ----YIHA-PHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYY 475 PT Y A P W D YP PIV K L Y Sbjct: 425 RNPTDTALSYFEAIPRKWGLSADDI--YPEPIVSVKDGRAKALAAYE 469 >gi|240169571|ref|ZP_04748230.1| Phr protein [Mycobacterium kansasii ATCC 12478] Length = 444 Score = 338 bits (866), Expect = 1e-90, Method: Composition-based stats. Identities = 152/475 (32%), Positives = 227/475 (47%), Gaps = 34/475 (7%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M+ L+W R DLR+ D+ A +D +V+A F+ P R+ ++ SL Sbjct: 1 MARALLWFRRDLRLRDHP--ALAAAAADDEVLACFVLDPRLEAS--SGRRRLQYLGDSLR 56 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 Q++ L + +V + E + + + + + + RRD+ + Sbjct: 57 QLRSDLGGRLLVTRGRPE-------ERIARIAKEIEASTVHISEDFAPFGRRRDERVRAA 109 Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 L V + S LL PG + Y+V+TPF + + + R+ A L Sbjct: 110 LGS-VPLVATGSSYLLSPGRVAKDDGTPYRVFTPFFRRWSELGWPSPARTGRDCARWLDP 168 Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246 P + P + GE AL F + + Y + RD P + GTS++S Sbjct: 169 AQVPVEHC---EIPDPGVPLDLAAGEAAALREWGAFVDDGLERYAQDRDRPDLDGTSRMS 225 Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP 306 +L G + PR L +GA S+L EL +R+FY ++ +P+ + Sbjct: 226 AHLRFGTIHPRTMVAALDF--------SGAGARSYLRELAFRDFYAAVLYDHPASAW-RN 276 Query: 307 FIPWTEKIEWN---KDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363 + ++I + + HL +AWK G TGFP+IDA MRQL G+MHNR+RMI ASFLVK Sbjct: 277 WNSDYDRIRTDTGSRAEHLFEAWKAGETGFPLIDAGMRQLRQTGFMHNRVRMIAASFLVK 336 Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423 DL + W+ G +F+ QL DGD+ASN GWQW A G D+ PYFR+FNPT QG++FDP G Sbjct: 337 DLHLPWQWGAAWFLDQLTDGDVASNQHGWQWCAGCGTDAAPYFRVFNPTTQGQKFDPSGD 396 Query: 424 FIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478 +IR W+PEL+ A + L YP PIVDH L +Y + Sbjct: 397 YIRRWVPELSA-------ATDAHLRTGKRPSGYPPPIVDHGTERAEALRRYRGMR 444 >gi|56707953|ref|YP_169849.1| deoxyribodipyrimidine photolyase [Francisella tularensis subsp. tularensis SCHU S4] gi|110670424|ref|YP_666981.1| deoxyribodipyrimidine photolyase [Francisella tularensis subsp. tularensis FSC198] gi|224457035|ref|ZP_03665508.1| deoxyribodipyrimidine photolyase [Francisella tularensis subsp. tularensis MA00-2987] gi|254370442|ref|ZP_04986447.1| hypothetical protein [Francisella tularensis subsp. tularensis FSC033] gi|254874757|ref|ZP_05247467.1| deoxyribodipyrimidine photolyase [Francisella tularensis subsp. tularensis MA00-2987] gi|56604445|emb|CAG45479.1| deoxyribodipyrimidine photolyase [Francisella tularensis subsp. tularensis SCHU S4] gi|110320757|emb|CAL08862.1| deoxyribodipyrimidine photolyase [Francisella tularensis subsp. tularensis FSC198] gi|151568685|gb|EDN34339.1| hypothetical protein FTBG_00211 [Francisella tularensis subsp. tularensis FSC033] gi|254840756|gb|EET19192.1| deoxyribodipyrimidine photolyase [Francisella tularensis subsp. tularensis MA00-2987] gi|282159139|gb|ADA78530.1| deoxyribodipyrimidine photolyase [Francisella tularensis subsp. tularensis NE061598] Length = 499 Score = 338 bits (866), Expect = 1e-90, Method: Composition-based stats. Identities = 126/483 (26%), Positives = 214/483 (44%), Gaps = 31/483 (6%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 + +VW + DLR+TDN AL A D ++ ++I PE W+Q +S RQ F+ L ++ Sbjct: 1 MQIVWFKRDLRVTDNLALSLASEKGD--ILPLYIIEPELWQQPDMSHRQYLFLSECLEEL 58 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEV-RRDKLLEKRL 127 L++ G D++E + + + ++ +++ + +RD LEK Sbjct: 59 NTELTKLGQSLAIM----LGDAVEIFEQLIQKYNIKNVWSHQETWNDWTYQRDIKLEKFF 114 Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187 + I ++ + + + + +++A + + ++ P Sbjct: 115 KQNNIVWHQPYQ-----NGVVRCLADRDNWALLWHQHMSEKIIRAPTKLKFICENQIKIP 169 Query: 188 VTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIP--AIQGTSQL 245 S + D + G AL IL F ++ Y ++ P A + S+L Sbjct: 170 TAESLGLEYDDCYKR-----QKGGRIRALRILDSFLYQRGCGYTKEMSSPVTAFKSCSRL 224 Query: 246 SPYLSIGVLSPRQCWNR-------LKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFY 298 SPY++ GV+S ++ + + +KE V K S S+L+ L W + + Sbjct: 225 SPYIAFGVISLKEIYQKANQRKNEIKESSVKNKTKWLSAMRSFLSRLRWHCHFMQKLEDQ 284 Query: 299 PSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITA 358 PS+ + + + +AWK G TG+P+IDA MR L GW++ R+R + Sbjct: 285 PSIEYENLHSAYDQLRTEPLNQQCFEAWKTGNTGYPMIDACMRALIATGWLNFRMRAMLM 344 Query: 359 SFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRF 418 SF L +DWR+ Y D + + Q +G + RI+NP Q Sbjct: 345 SFASYHLWLDWRVTSLYLARLFTDYEPGIHYSQVQMQ--SGTTGINSIRIYNPIKQSIDQ 402 Query: 419 DPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478 DP G FIR WLPEL NV + IH P WL+K++ SL+YP P +D K+A + Y + Sbjct: 403 DPNGEFIRRWLPELENVSNENIHTP--WLEKHN-SLDYPDPTIDEKQARKFAADNIYKIR 459 Query: 479 KQS 481 K S Sbjct: 460 KSS 462 >gi|83951316|ref|ZP_00960048.1| deoxyribodipyrimidine photolyase [Roseovarius nubinhibens ISM] gi|83836322|gb|EAP75619.1| deoxyribodipyrimidine photolyase [Roseovarius nubinhibens ISM] Length = 473 Score = 337 bits (865), Expect = 2e-90, Method: Composition-based stats. Identities = 150/475 (31%), Positives = 218/475 (45%), Gaps = 36/475 (7%) Query: 21 TDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQKSLSQKGIVFQ 80 +D+ AL AA VI V I + HG+ A + + + ++L++KG Sbjct: 16 SDHPALRAAVARG-GPVIPVMIRDD---QMHGLGAAPKWRLGLGIEAMGRALAEKGSRLI 71 Query: 81 YHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL-QHRVICKSFDDS 139 + E L + + +++ R Y+ + RD+ +++ L V +S Sbjct: 72 LRSG----QAAEVLSALVEETGAGAVYWTRAYDPESIARDRGVKETLVAAGVEAQSHAGH 127 Query: 140 VLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDY 199 +L P + YKVYTP+ A+ V A L + +T P D+ Sbjct: 128 LLFEPWEVETGQGSYYKVYTPYWNAVKSRDVAAPLTA----PAEITAPAHWPESEDLDDW 183 Query: 200 PFQA--------IDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSI 251 A P +GE A L F + + Y +RD+P GTS LS LS+ Sbjct: 184 ALGAAMQRGAAVCLPHQHVGEATAQGRLGAFMAQGIAEYRARRDLPGEAGTSGLSENLSL 243 Query: 252 GVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWT 311 G +S RQCW+ + +GA +W EL+WREF HL+ P + G + Sbjct: 244 GEISIRQCWHAAMRARQE----GAAGAETWAKELVWREFAYHLIYHTPRLASGN-WREEW 298 Query: 312 EKIEWNK--DSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDW 369 + W + DS + AWKQG TG +DAAMR++ G MHNR RM+ AS+L K LL W Sbjct: 299 DGFPWREAGDSPEVMAWKQGRTGVEFVDAAMREMYVTGKMHNRARMVVASYLTKHLLTHW 358 Query: 370 RIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWL 429 R+G+ +F L D D+ASN GWQW A +G D+ P+FR+FNP Q ++FD G + R W+ Sbjct: 359 RVGQRWFEEHLSDWDVASNALGWQWVAGSGPDAAPFFRVFNPDTQAEKFDKGGAYRRAWI 418 Query: 430 PELNNVPTQYIHA-----PHSWLDKNDLSLNYPL-PIVDHKKACHHTLNQYYAAK 478 E + P A P SW S YP PIV K+ L Y A K Sbjct: 419 AEGQDAPPDTALAYFEAIPQSWNLSA--SRRYPDSPIVGLKEGRQAALAAYEARK 471 >gi|163741206|ref|ZP_02148598.1| deoxyribodipyrimidine photolyase [Phaeobacter gallaeciensis 2.10] gi|161385559|gb|EDQ09936.1| deoxyribodipyrimidine photolyase [Phaeobacter gallaeciensis 2.10] Length = 479 Score = 337 bits (865), Expect = 2e-90, Method: Composition-based stats. Identities = 151/475 (31%), Positives = 223/475 (46%), Gaps = 26/475 (5%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 L W+R DLR+ +N A A + A VI VFI + A + L + K Sbjct: 12 LWWVRRDLRLAENPA-LDAAVAAGAPVIPVFIFD---TLDEDLGAAPRFRLGLGLAHLAK 67 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ-H 129 L ++G + + E L + + + R Y+ + RD ++K+L+ Sbjct: 68 GLERRGARLILRRGP----AQEVLTQLITETGAGAIHWTRAYDPQAIARDTAIKKQLKGQ 123 Query: 130 RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQA---DLRSLPVPA-IRLT 185 + KSF +L P ++ MY+VY+P+ K++ V +P PA + Sbjct: 124 GIAAKSFGGHLLFEPWTVETKTGGMYRVYSPYWKSVRDRDVDGLIAAPSRIPAPAQWPAS 183 Query: 186 GPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245 + + + +GE A L +F +V Y + RD PA+ TS L Sbjct: 184 DDLDSWQLAAGMRRGADVVAQYCRVGEDAAQARLAEFLDTRVADYKQDRDFPAVDATSGL 243 Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305 S L+ G +SPR+ W+ ++ KSGA +L E++WREF HLM P + + Sbjct: 244 SENLAWGEISPRRMWH----HGLEARRAGKSGAEHFLKEIVWREFAYHLMFHTPHILT-R 298 Query: 306 PFIPWTEKIEW-NKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364 + P E W +D + AW++G TG+ +DAAMR+L G MHNR RMI ASFL K Sbjct: 299 NWRPEWESFRWSEQDDDRVDAWRRGQTGYNFVDAAMRELYVTGKMHNRARMIVASFLTKH 358 Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424 +L WRIG+++F L+D D ASN GWQW A +G D+ P+FRIFNP Q ++FDP+G + Sbjct: 359 MLTHWRIGQQWFEECLVDWDPASNAMGWQWVAGSGPDASPFFRIFNPDGQLEKFDPKGRY 418 Query: 425 IRHWLPELNNVPTQ-----YIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQY 474 W+ E P Q Y P SW P VD K+ L Y Sbjct: 419 QSAWIAEGQANPPQTALDFYRATPLSWGLSPQDRRA--SPFVDLKEGRARALEAY 471 >gi|294011743|ref|YP_003545203.1| deoxyribodipyrimidine photo-lyase [Sphingobium japonicum UT26S] gi|292675073|dbj|BAI96591.1| deoxyribodipyrimidine photo-lyase [Sphingobium japonicum UT26S] Length = 500 Score = 337 bits (864), Expect = 3e-90, Method: Composition-based stats. Identities = 139/480 (28%), Positives = 219/480 (45%), Gaps = 38/480 (7%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 L+W R DLR+ D AL AA VI +++ + RQ + +++ SL + Sbjct: 36 PVLLWFRQDLRLADQAALGAAVQEG--PVIPLYVLDDQAPRQWKMGGASRWWLHHSLRSL 93 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128 L +KG Q + ++ + + ++ YE +K L KRL Sbjct: 94 DDDLRKKGSRLVLRQG----NCVDQIVQIAEETGARRVHALHHYEPWWRNAEKALGKRLD 149 Query: 129 HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188 D ++LLPPG++ Y++YTPF +A++ ++ A+ P R+ P Sbjct: 150 ----LCLHDGALLLPPGAVRTGGGNSYRIYTPFARAVMDHMPPAEPVRAPS---RIDAPG 202 Query: 189 TPSNIPRFFDYPFQAIDPMF--------PIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ 240 + P + GE A + F E Y R++P+ + Sbjct: 203 QWPKGDSLDRWGLLPTAPDWAAAFSRDWTPGEAGARANVAAFLDEA-ADYDRARNLPSRE 261 Query: 241 GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPS 300 G+S+LSP+L G +SP Q W ++ A ++L ELIWR++ + P+ Sbjct: 262 GSSRLSPHLHFGEVSPAQVWRQV--------AGAPGNATTFLKELIWRDYAHTQIWAMPA 313 Query: 301 VCMGKPFIPWTEKIEWNKDSHL---LQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMIT 357 P + + W AWK G TG+PI+DA MRQL T GWMHNR+RMI Sbjct: 314 YGSENA-RPAFDAMPWRDLREAGVDFTAWKTGRTGYPIVDAGMRQLWTTGWMHNRVRMIA 372 Query: 358 ASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKR 417 ASFL+K LL+DWR G +F L+D A+N+ WQW A +G D+ + RI P Q ++ Sbjct: 373 ASFLIKHLLIDWRHGARWFWDTLVDASYANNSVNWQWVAGSGVDANIFSRIMAPLTQSEK 432 Query: 418 FDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477 F+ +IR W+PEL ++ IH P + + +YP +DH++ L + Sbjct: 433 FEA-ADYIRKWVPELAHLNDDVIHDPEAHDARPA---DYPAKCIDHREGRERALAAWRRI 488 >gi|145881069|gb|ABP97098.1| cryptochrome CRY1 [Acropora millepora] Length = 552 Score = 336 bits (863), Expect = 3e-90, Method: Composition-based stats. Identities = 126/500 (25%), Positives = 199/500 (39%), Gaps = 32/500 (6%) Query: 6 AMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASL 65 + W+R DLR+ DN +L A SD V +++ + GI F+ SL Sbjct: 25 KAKHAIHWVRKDLRLHDNPSLLEAVKGSDT-VRIIYVLDTKVDHATGIGLNLWRFLLQSL 83 Query: 66 LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125 V SL + + + + + + L + E +D + Sbjct: 84 EDVDDSLRKLNSRLFVVRG----QPADVFPRLFREWKTSFLTFEEDSEPFGREKDAAIRL 139 Query: 126 RLQHRVICKSFD-DSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL 184 Q + + L P I+ H + A++++L + L Sbjct: 140 LAQESGVEVAVGRSHTLYDPQLIIKHNSGTAPLTYKKFLAIVRSLGNPQHPCATLDVHLL 199 Query: 185 TGPVTPSNIPRFFDYPFQAIDPM-----------FPIGEQNALHILRKFCKEKVY--YYV 231 G TP + + ++ + + GE AL L + + K + + Sbjct: 200 GGCSTPVSEDHEEKFGVPSLKELGLDVAKLSTEIWHGGETEALIRLDRHLERKAWIASFE 259 Query: 232 EQRDIPAI--QGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWRE 289 + + P + LSPYL G LSPR ++RL E + + K K S +L+WRE Sbjct: 260 KPKVTPNSLFPSPTGLSPYLRFGCLSPRLFYHRLSELYRKV--KCKDPPISLYGQLLWRE 317 Query: 290 FYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWM 349 F+ + A P+ P +I W + L+ W+QG TGFP IDA M QL G + Sbjct: 318 FFFTVAANNPNFDQMDE-NPVCLQIPWTANPEWLKKWEQGQTGFPWIDAIMIQLKQEGXI 376 Query: 350 HNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRI 408 H+ R FL + DL + W G + F LLD + + N G W W S +F Sbjct: 377 HHLARHAVGCFLTRGDLWISWEEGMKVFERWLLDAEWSLNAGNWMW-LSCSAFFQQFFNC 435 Query: 409 FNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLD------KNDLSLNYPLPIVD 462 P G++ DP G ++R +LP L P +YIHAP + + + + +YP PIVD Sbjct: 436 ICPVGFGRKLDPNGDYVRKYLPVLKGFPAKYIHAPWTAPENVQRAARCIIGKDYPRPIVD 495 Query: 463 HKKACHHTLNQYYAAKKQSL 482 H K L + K L Sbjct: 496 HHKVSTANLEKMRNVFKALL 515 >gi|290510440|ref|ZP_06549810.1| deoxyribodipyrimidine photo-lyase [Klebsiella sp. 1_1_55] gi|289777156|gb|EFD85154.1| deoxyribodipyrimidine photo-lyase [Klebsiella sp. 1_1_55] Length = 295 Score = 336 bits (862), Expect = 4e-90, Method: Composition-based stats. Identities = 168/273 (61%), Positives = 202/273 (73%), Gaps = 2/273 (0%) Query: 207 MFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEE 266 +F E+ AL LR FC++ Y QRD PA++GTS+LSP L+ GVLSPRQC +RL E Sbjct: 15 LFAADEKTALARLRAFCQQPAAEYEGQRDFPAVEGTSRLSPCLATGVLSPRQCLHRLLTE 74 Query: 267 FVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAW 326 L +WLNELIWREFYRHLM +YP +C G+PFI WT+K+ W +D LQAW Sbjct: 75 HPAALDGGAGA--TWLNELIWREFYRHLMVYYPKLCKGRPFIAWTDKVAWREDDAALQAW 132 Query: 327 KQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLA 386 ++G TGFPI+DAAMRQLN GWMHNRLRMI ASFL KDL +DWR GE YFMSQL+DGDLA Sbjct: 133 QRGETGFPIVDAAMRQLNATGWMHNRLRMIVASFLTKDLRLDWRAGERYFMSQLIDGDLA 192 Query: 387 SNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSW 446 +NNGGWQWAASTG D+ PYFRIFNPT QG++FD QG F+R WLPEL VP + +H P +W Sbjct: 193 ANNGGWQWAASTGTDAAPYFRIFNPTTQGEKFDKQGVFMRRWLPELAKVPEKALHQPWAW 252 Query: 447 LDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479 DK + L+YP PIVDHK+A TL + AA+K Sbjct: 253 ADKQGIKLDYPRPIVDHKQARQETLAAWEAARK 285 >gi|254586765|ref|XP_002498950.1| ZYRO0G22418p [Zygosaccharomyces rouxii] gi|238941844|emb|CAR30017.1| ZYRO0G22418p [Zygosaccharomyces rouxii] Length = 557 Score = 336 bits (862), Expect = 5e-90, Method: Composition-based stats. Identities = 152/493 (30%), Positives = 243/493 (49%), Gaps = 32/493 (6%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSD---AKVIAVFIATPEQWRQHGISARQSHFIYA 63 + + W RNDLRI DN Y A S A+++ +F W H S + +Y Sbjct: 70 VKTVIHWFRNDLRIHDNTGFYTAVEESQRLGARILTIFTINQNDWIAHLDSNPKLTLMYQ 129 Query: 64 SLLQVQKSLSQKGIVFQYH-------QCSNFDDSIEWLDSYCLQQRVTKLF--YNRQYEI 114 SL + LS+ GI + SN + WL CL+ ++ N +Y Sbjct: 130 SLKSLHGKLSELGIPLYTLVFDSGEPKLSNSMQFVIWLRDQCLKISNGAIYLTANAEYLA 189 Query: 115 NEVRRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADL 174 +E+ RD + + F D+ ++ PG + + Y V++P+ K ++ Sbjct: 190 DELYRDIRVFAVSDEKFQFNVFHDTCIVEPGVLKTNQDSPYTVFSPWYKKWCLRVMDGKS 249 Query: 175 RSLPVPAIRLTGPV---TPSNIPRFFDYP----FQAIDPMFPIGEQNALHILRKFCKEKV 227 + + + L + + + F Y F + + E A L F ++ V Sbjct: 250 STNLIEPLVLEKRIYNDDEEFVHKEFSYYLPSQFLSSTTIPDASEDAAWSRLTTFLQKNV 309 Query: 228 YYYVEQRDIPAIQGTSQLSPYLSIGVLSPR----QCWNRLKEEFVDLLIKPKSGAFSWLN 283 Y++ +D + +S LSPYL++G+LS R + + + V K + ++ Sbjct: 310 GNYLD-KDTLLTEASSHLSPYLALGILSARCVVNEAFRLVGSRLVGKSPKDMTPVEQFIR 368 Query: 284 ELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQL 343 E+ WR+FY+ ++ F+P + M PF + +I+W+ + Q W G TGFPI+DA MR+L Sbjct: 369 EVAWRDFYKDVICFWPYLSMDIPFNLSSLEIKWDNNFSNFQKWCLGKTGFPIVDAIMRKL 428 Query: 344 NTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSV 403 + G+++NR RMITASFL K+LL+DWR GE++F L+D DLASN GGW + +STG D+ Sbjct: 429 SQDGYINNRARMITASFLSKNLLIDWRWGEKWFRKHLIDCDLASNVGGWGFVSSTGADAQ 488 Query: 404 PYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDH 463 PYFR+FN Q + FDP G FI+ W+PEL N ++ +H+ ++ YP PI D Sbjct: 489 PYFRVFNMERQSRAFDPNGEFIKKWVPELKN--SKNVHSSIQEVES------YPNPITDS 540 Query: 464 KKACHHTLNQYYA 476 K + L Y Sbjct: 541 KSSRQRALEIYNE 553 >gi|318042779|ref|ZP_07974735.1| deoxyribodipyrimidine photolyase [Synechococcus sp. CB0101] Length = 510 Score = 336 bits (861), Expect = 6e-90, Method: Composition-based stats. Identities = 167/510 (32%), Positives = 226/510 (44%), Gaps = 51/510 (10%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 L W R DLR+ DN L + V VF+ P ++ + F+ SL ++Q+ Sbjct: 7 LFWHRRDLRLADNLGLAT-AAAATPAVTGVFVLDPAILGAPDMAPARVWFLLESLRELQQ 65 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130 S + G + D + L + +NR E RD+ + LQ Sbjct: 66 SWREAGSRLFVLEG----DPEQVLPQLAEALAAPVVAWNRDVEPYGRARDRRVAAALQAA 121 Query: 131 VICKSF-DDSVLLPPGSILNHALQMYKVYTPFRKALIQN--------------------- 168 D +L+ P ++ Y+VY PF + Sbjct: 122 GRKVLVDWDQLLVAPEALKTGGGDPYRVYGPFLRNWRGQVERKAAAGSALSGGVEPVAAP 181 Query: 169 --LVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPM----FPIGEQNALHILRKF 222 LV D +LP P L + + + QA D GE AL L+ F Sbjct: 182 AGLVDLDPEALPEPRSALWAQLPLRDSLPTLEELSQAFDGGDLCPCRPGEAAALVQLQAF 241 Query: 223 CKEKVYY--------YVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDL---- 270 C Y R++P GTS LS L G LSPRQ W ++ Sbjct: 242 CDGGGASSSRIPLFAYEPGRNMPGEAGTSGLSAALKFGTLSPRQAWAAAQQARQVAEALG 301 Query: 271 -LIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQG 329 + + W EL WREFY+ + +P + G P+ P + W+ +AW +G Sbjct: 302 GAEEAIASIGVWEQELAWREFYQQALFHFPELAEG-PYRPQWRQFPWDNHQGHYEAWCEG 360 Query: 330 YTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNN 389 TG PIIDAAMRQLN GWMHNR RMI AS+LVKDL+ DWR GE FM +L+DGDLA+NN Sbjct: 361 LTGMPIIDAAMRQLNESGWMHNRCRMIVASYLVKDLICDWRWGETAFMQRLVDGDLAANN 420 Query: 390 GGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDK 449 GGWQW+AS+G D P RIFNP Q +FDP G +IRHWLPEL +V T+ + + + Sbjct: 421 GGWQWSASSGMDPKP-LRIFNPATQASKFDPTGAYIRHWLPELRHVNTKDLLSGEIAPME 479 Query: 450 NDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479 YP +V HKK Y + K Sbjct: 480 RR---GYPAQVVSHKKQQARFKALYASLPK 506 >gi|333028704|ref|ZP_08456768.1| putative deoxyribodipyrimidine photo-lyase [Streptomyces sp. Tu6071] gi|332748556|gb|EGJ78997.1| putative deoxyribodipyrimidine photo-lyase [Streptomyces sp. Tu6071] Length = 481 Score = 335 bits (860), Expect = 7e-90, Method: Composition-based stats. Identities = 129/475 (27%), Positives = 223/475 (46%), Gaps = 22/475 (4%) Query: 2 KATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFI 61 A A+ +V +DLR+ D+ L AA ++ +V+ +F+ P + +A ++ F+ Sbjct: 22 PAEPAVKASIVLYTSDLRLHDHPPLRAAVREAE-EVVPLFVRDPGIKKVGFHAANRAAFL 80 Query: 62 YASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDK 121 L + L ++G + + + ++ R Sbjct: 81 ADCLGDLDAGLRERGGRLVVR----AGEPAQVVRELVGSTGAERVHVAAGVSAYARNRAD 136 Query: 122 LLEKRLQHRVICKSFDDSVL--LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPV 179 L L+ ++V+ LPPG ++ + + V+TP+ + ++ L + Sbjct: 137 RLRAALEGTGAELVEHEAVITALPPGEVVPGSKDHFAVFTPYHRQWSAQHLREPLGAP-- 194 Query: 180 PAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAI 239 + + V +PR D + GE+ L + ++ + Y + D A Sbjct: 195 RKLSVPSKVRSDGVPRREDVE-GVSPGLARGGEREGRARLADWRRDGISRYEDLHDDLAG 253 Query: 240 QGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYP 299 GTS+LSPYL G LS +C +R + +GA +++ +L WR+F+ ++A P Sbjct: 254 DGTSRLSPYLHFGALSAAECVHRARAV-------GGAGADAFVRQLCWRDFHHQVLAARP 306 Query: 300 SVCMGKPFIPWTEKIEWNKDSHL-LQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITA 358 + + + P + D+ AW++G TG+P++DAAMRQL GWMHNR R++ A Sbjct: 307 AAA-HEDYRPRGDHWRTGSDAEHEAAAWREGRTGYPVVDAAMRQLAHEGWMHNRGRLLAA 365 Query: 359 SFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRF 418 SFL K L +DWR+G +F+ L+DGDL +N WQW A TG D+ P R+ NP Q +++ Sbjct: 366 SFLTKTLYLDWRLGAAHFLDLLVDGDLVNNQMNWQWVAGTGTDTRP-GRVLNPLTQARKY 424 Query: 419 DPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQ 473 DP+G ++RHW+PEL + + +H P W + YP P+VD + Sbjct: 425 DPEGDYVRHWVPELRGIEGRAVHEP--WKRPREEREGYPEPLVDLAEGRDRFRRA 477 >gi|119389332|pdb|2E0I|A Chain A, Crystal Structure Of Archaeal Photolyase From Sulfolobus Tokodaii With Two Fad Molecules: Implication Of A Novel Light-Harvesting Cofactor gi|119389333|pdb|2E0I|B Chain B, Crystal Structure Of Archaeal Photolyase From Sulfolobus Tokodaii With Two Fad Molecules: Implication Of A Novel Light-Harvesting Cofactor gi|119389334|pdb|2E0I|C Chain C, Crystal Structure Of Archaeal Photolyase From Sulfolobus Tokodaii With Two Fad Molecules: Implication Of A Novel Light-Harvesting Cofactor gi|119389335|pdb|2E0I|D Chain D, Crystal Structure Of Archaeal Photolyase From Sulfolobus Tokodaii With Two Fad Molecules: Implication Of A Novel Light-Harvesting Cofactor Length = 440 Score = 335 bits (860), Expect = 7e-90, Method: Composition-based stats. Identities = 148/471 (31%), Positives = 232/471 (49%), Gaps = 48/471 (10%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQW-RQHGISARQSHFIYASLLQVQ 69 + R DLR+ DN L A D +VI VFIA P Q S F+ SLL++ Sbjct: 4 IFIFRRDLRLEDNTGLNYALSECD-RVIPVFIADPRQLINNPYKSEFAVSFMINSLLELD 62 Query: 70 KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH 129 L +KG F ++ + + + +V ++ N Y + RD+ + K + Sbjct: 63 DELRKKGSRLNV----FFGEAEKVVSRFF--NKVDAIYVNEDYTPFSISRDEKIRKVCEE 116 Query: 130 RVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188 I K+++D +L P +L ++ +T F + + V+ + + V Sbjct: 117 NGIEFKAYEDYLLTP------KSLFHHRNFTSFYNEVSKVKVREP------ETMEGSFDV 164 Query: 189 TPSNIPRFFDYPFQAID-PMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSP 247 T S++ F F+ I+ P+F G + L++L + + +RD PA +LSP Sbjct: 165 TDSSMNVDFLLTFKKIESPLFRGGRREGLYLLHRNVDFR------RRDYPAENNNYRLSP 218 Query: 248 YLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPF 307 +L G +S R+ + + G ++ EL WR+F+ L + P V G + Sbjct: 219 HLKFGTISMREAYYT------------QKGKEEFVRELYWRDFFTLLAYYNPHV-FGHCY 265 Query: 308 IPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLV 367 + I W + +AWK+G TG+PIIDA MR LN+ G+++ R+RM+ A FLVK L V Sbjct: 266 RREYDNISWENNESYFEAWKEGRTGYPIIDAGMRMLNSTGYINGRVRMLVAFFLVKVLFV 325 Query: 368 DWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRH 427 DWR GE YF ++L+D D A NNG WQW ASTG D FR+FNP Q ++FDP+ FI+ Sbjct: 326 DWRWGERYFATKLVDYDPAINNGNWQWIASTGVD--YMFRVFNPWKQQEKFDPEAKFIKE 383 Query: 428 WLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478 W+ EL +VP IH+ + YP PIV+ + ++ ++Y K Sbjct: 384 WVEELKDVPPSIIHSIYKTKVP-----GYPSPIVNWLERVNYVKSEYKNVK 429 >gi|321471119|gb|EFX82092.1| CRY-M [Daphnia pulex] Length = 553 Score = 335 bits (860), Expect = 7e-90, Method: Composition-based stats. Identities = 115/493 (23%), Positives = 187/493 (37%), Gaps = 32/493 (6%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 + W R LR+ DN +L +FI P + + F+ SL + + Sbjct: 14 VHWFRKGLRLHDNPSLKDGLKGCSTY-RCIFILDPWFAGSSNVDINKWRFLLESLEDLDQ 72 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH- 129 +L + + L + T L + E RD+ + + Sbjct: 73 NLRKLNSRLFVIRGQPAG----VLPKLFKEWETTCLTFEEDPEPFGRVRDQNIITMCKDF 128 Query: 130 RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189 + + L P I+ + + +I ++ + + T Sbjct: 129 NIEVITRASHTLYHPQKIIEKNGGKAPLTYRQFQNIIASVDAPPPPESDITFESIGRGYT 188 Query: 190 PSN--------IPRFFDYPFQA---IDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPA 238 P + +P + F + ++ GE AL L + + K + R Sbjct: 189 PMDESMDDRFSVPTLEELGFDTDGLMPAVWHGGETEALTRLERHLERKAWVASFGRPKMT 248 Query: 239 IQGT----SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHL 294 Q + LSPYL G LS R +L + IK S +++WREF+ Sbjct: 249 PQSLLASQTGLSPYLRFGCLSVRLFHQQLTNLYKK--IKKAQPPLSLHGQVLWREFFYCA 306 Query: 295 MAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLR 354 P+ P +I W+ ++ L W G TGFP IDA M QL GW+H+ R Sbjct: 307 ATNNPNFDKMIG-NPICVQIPWDSNAEALAKWANGQTGFPWIDAIMTQLREEGWIHHLAR 365 Query: 355 MITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTI 413 A FL + DL + W G + F LLD D + N G W W S + +F + P Sbjct: 366 HAVACFLTRGDLWISWEEGMKVFEELLLDADWSVNAGTWMW-LSCSSFFHQFFHCYCPVR 424 Query: 414 QGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLD------KNDLSLNYPLPIVDHKKAC 467 G++ DP G FI+ + P L N P QYIH P + + K + +YPLP+V+H + Sbjct: 425 FGRKVDPNGDFIKKYQPVLKNFPLQYIHEPWNAPESVQRAAKCVIGKDYPLPMVNHLEVS 484 Query: 468 HHTLNQYYAAKKQ 480 + + ++ Sbjct: 485 QLNIERMKQVYQR 497 >gi|283806654|ref|NP_001164573.1| chryptochrome 2-2 [Acyrthosiphon pisum] gi|283476385|emb|CAY26040.1| chryptochrome 2-2 [Acyrthosiphon pisum] Length = 512 Score = 335 bits (860), Expect = 8e-90, Method: Composition-based stats. Identities = 122/495 (24%), Positives = 194/495 (39%), Gaps = 33/495 (6%) Query: 10 HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69 + W R LRI DN +L N+ +FI P + + F+ L + Sbjct: 6 TVHWFRKGLRIHDNPSLREGLINAKTF-RCIFILDPWFAGASNVGINKWRFLLQCLSDLD 64 Query: 70 KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH 129 SL + + E L Q T + E RD+ ++ Sbjct: 65 NSLKKLNSRLFVIKG----QPAEALPKLFRQWGTTNFTFEEDPEPFGRVRDQNIKVMCSE 120 Query: 130 -RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188 + + L I+N + + L++ + + + L Sbjct: 121 MGISVITRCSHTLYQLDKIINVNGGKAPLTYHLFQKLLECIDPPERAVPSIDKEFLGNAF 180 Query: 189 TPSNI--------PRFFDYPFQAIDPM----FPIGEQNALHILRKFCKEK--VYYYVEQR 234 TP P + F+ I+ + + GE AL L+ + K + + + + Sbjct: 181 TPIKYDHDEIFGVPTLEELGFKEINNITRHVWVGGETEALIRLQCHLERKAFIASFGKPK 240 Query: 235 DIPA--IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYR 292 P + + L+PYL G LS R ++ L E + I+ S +L+WR+F+ Sbjct: 241 MTPQSLVASPTGLAPYLKFGCLSTRLFFSELNELYKK--IRKSQPPLSLHGQLLWRDFFY 298 Query: 293 HLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNR 352 P+ P +I W+K+ L W G TG+P IDA M QL GW+H Sbjct: 299 CASTNNPNFDRM-VGNPICVQIPWDKNPRALSKWANGQTGYPWIDAIMIQLRQEGWIHCI 357 Query: 353 LRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNP 411 R A FL + DL + W G + F LLD D + N G W W S + + + P Sbjct: 358 ARHAVACFLTRGDLWLSWEEGMKVFDELLLDADWSVNAGYWMW-YSCSSFYQEFIHCYCP 416 Query: 412 TIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDK------NDLSLNYPLPIVDHKK 465 G++ DP G +IR ++P LNN+P QYIH P + + ++YPLPIV+H Sbjct: 417 VRFGRKVDPNGDYIRRYIPALNNMPNQYIHEPWLAPESIQFSANCIIGIDYPLPIVNHIN 476 Query: 466 ACHHTLNQYYAAKKQ 480 A L + A +Q Sbjct: 477 ASKINLERMKLAYQQ 491 >gi|15921125|ref|NP_376794.1| deoxyribodipyrimidine photolyase [Sulfolobus tokodaii str. 7] gi|15621910|dbj|BAB65903.1| 432aa long hypothetical deoxyribodipyrimidine photolyase [Sulfolobus tokodaii str. 7] Length = 432 Score = 335 bits (860), Expect = 8e-90, Method: Composition-based stats. Identities = 148/471 (31%), Positives = 232/471 (49%), Gaps = 48/471 (10%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQW-RQHGISARQSHFIYASLLQVQ 69 + R DLR+ DN L A D +VI VFIA P Q S F+ SLL++ Sbjct: 4 IFIFRRDLRLEDNTGLNYALSECD-RVIPVFIADPRQLINNPYKSEFAVSFMINSLLELD 62 Query: 70 KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH 129 L +KG F ++ + + + +V ++ N Y + RD+ + K + Sbjct: 63 DELRKKGSRLNV----FFGEAEKVVSRFF--NKVDAIYVNEDYTPFSISRDEKIRKVCEE 116 Query: 130 RVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188 I K+++D +L P +L ++ +T F + + V+ + + V Sbjct: 117 NGIEFKAYEDYLLTP------KSLFHHRNFTSFYNEVSKVKVREP------ETMEGSFDV 164 Query: 189 TPSNIPRFFDYPFQAID-PMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSP 247 T S++ F F+ I+ P+F G + L++L + + +RD PA +LSP Sbjct: 165 TDSSMNVDFLLTFKKIESPLFRGGRREGLYLLHRNVDFR------RRDYPAENNNYRLSP 218 Query: 248 YLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPF 307 +L G +S R+ + + G ++ EL WR+F+ L + P V G + Sbjct: 219 HLKFGTISMREAYYT------------QKGKEEFVRELYWRDFFTLLAYYNPHV-FGHCY 265 Query: 308 IPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLV 367 + I W + +AWK+G TG+PIIDA MR LN+ G+++ R+RM+ A FLVK L V Sbjct: 266 RREYDNISWENNESYFEAWKEGRTGYPIIDAGMRMLNSTGYINGRVRMLVAFFLVKVLFV 325 Query: 368 DWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRH 427 DWR GE YF ++L+D D A NNG WQW ASTG D FR+FNP Q ++FDP+ FI+ Sbjct: 326 DWRWGERYFATKLVDYDPAINNGNWQWIASTGVD--YMFRVFNPWKQQEKFDPEAKFIKE 383 Query: 428 WLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478 W+ EL +VP IH+ + YP PIV+ + ++ ++Y K Sbjct: 384 WVEELKDVPPSIIHSIYKTKVP-----GYPSPIVNWLERVNYVKSEYKNVK 429 >gi|326437928|gb|EGD83498.1| DNA photolyase [Salpingoeca sp. ATCC 50818] Length = 540 Score = 335 bits (860), Expect = 8e-90, Method: Composition-based stats. Identities = 131/515 (25%), Positives = 207/515 (40%), Gaps = 46/515 (8%) Query: 5 TAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYAS 64 + +V + W R LR+ DN A A +V VF+ P + + + +F+ S Sbjct: 2 SGGAVSIHWFRKGLRLHDNAA-LLAALKGAKQVYPVFVLDPHFAKPEFVGVVRYNFLLES 60 Query: 65 LLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLE 124 L + KSL G + ++ L+ + VT+L + R E RD Sbjct: 61 LRDLDKSLRTLGSRLYVLKGKP----LQALEEKFKEWEVTRLTFERDTEPYAKLRDTQAR 116 Query: 125 KRL-QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFR------------KALIQNLVQ 171 + +H + + L P + A K+ + A + + Sbjct: 117 ELAEKHGIEVITTVGHTLHDPEQYIAKAGGADKIPLTYSSFGTLFRRLGKVPAALSAPTK 176 Query: 172 ADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDP----MFPIGEQNALHILRKFCKEKV 227 D ++P D ++ D FP GE AL +R+ + K Sbjct: 177 EDFPQSSTLVRTDALDDHRFDVPSLKDMGYEWNDDEHEVRFPGGETEALERMRRHLQRKA 236 Query: 228 Y--YYVEQRDIPAI--QGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLN 283 + ++ + + P T+ LSPYL G LSPR ++ L + + K S Sbjct: 237 WIAHFEKPKTSPNTLEPSTTGLSPYLKFGCLSPRLFYHELARVYAEYRDHAKP-PVSLHG 295 Query: 284 ELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQL 343 +L+WREF+ + + +I+W+ + LL AW+ TG+P IDA M QL Sbjct: 296 QLLWREFFHMCGYAVKNFDRMEGNR-ICRQIDWDTNDALLAAWENARTGYPWIDACMTQL 354 Query: 344 NTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDS 402 GW+H+ R A FL + DL W G + F L+D D N+ W W S + Sbjct: 355 RREGWLHHLARHAVACFLTRGDLYQSWEKGAQVFDRLLVDADWHLNSANWMW-LSCSSFF 413 Query: 403 VPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLD------KNDLSLNY 456 YFR+++P GK+ DP G +IR +LP+L P +YI+ P + +Y Sbjct: 414 YQYFRVYSPVAFGKKTDPSGAYIRKYLPQLKAFPDKYIYEPWKAPPGVQRSCGCIIGKDY 473 Query: 457 PLPIVDHKK------ACHH----TLNQYYAAKKQS 481 P PIVDH + A L Q AKK + Sbjct: 474 PEPIVDHAEVSAANKARIRACYDALKQAEKAKKTT 508 >gi|302790279|ref|XP_002976907.1| hypothetical protein SELMODRAFT_106065 [Selaginella moellendorffii] gi|300155385|gb|EFJ22017.1| hypothetical protein SELMODRAFT_106065 [Selaginella moellendorffii] Length = 499 Score = 335 bits (860), Expect = 8e-90, Method: Composition-based stats. Identities = 126/480 (26%), Positives = 214/480 (44%), Gaps = 36/480 (7%) Query: 2 KATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGI------SA 55 + V ++W RNDLRI DN+AL+ A +S + V+ V+ P + Sbjct: 17 SSRNGKGVSIMWFRNDLRIVDNEALFKAWASS-SSVLPVYCVDPRHFGTTHYFKFPKTGE 75 Query: 56 RQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEIN 115 ++ F+ SL+ ++K+L ++G+ + L ++ + Sbjct: 76 LRAQFLLESLVDLKKNLKKRGLDLVIRSGNPEF----ILPLLVEAVGAHTIYAQEETCSE 131 Query: 116 EVRRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLR 175 E++ +K ++K + + + + + + ++ VYT FRKA+ + Sbjct: 132 ELQVEKAVKKSIGTKAKLELVWGTTMYHLNDLPFTTARLPDVYTQFRKAVESSSRVRPCL 191 Query: 176 SLPVPAIRLTGPV-----TPSNIPRFFDYPFQAIDP------MFPIGEQNALHILRKFCK 224 LP L + +P D + + F GE A+ L ++ Sbjct: 192 KLPQTLGPLPDSLGEKVGDLDKVPNLSDLGLRPREQVSLAAMQFTGGETAAIQRLCEYFW 251 Query: 225 EKV--YYYVEQRD-IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSW 281 K Y E R+ + +++ SP+L+ G +SPR + ++ + + Sbjct: 252 TKNCLRNYKETRNGMLGADYSTKFSPWLASGSISPRFIYEEASIKYEKERT-ANNSTYWV 310 Query: 282 LNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMR 341 L ELIWR+++R L Y + W++D L +AW+ G TG+P+IDA MR Sbjct: 311 LFELIWRDYFRFLSMKYGNSIFHLEGPRKVRTKSWSQDKTLFEAWRTGTTGYPLIDANMR 370 Query: 342 QLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGND 401 +L G+M NR R I SFLV+D+ +DWR+G E+F S LLD D SN G W + A GND Sbjct: 371 ELYATGFMSNRGRQIVCSFLVRDMGIDWRMGAEWFESCLLDYDPCSNYGNWTYGAGVGND 430 Query: 402 SVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIV 461 R F+ Q + +DP G+++ HW+P+L +PT H+P + Y IV Sbjct: 431 PRE-DRYFSIPKQAQTYDPDGSYVSHWIPQLQELPTDARHSPK---------VGYLKKIV 480 >gi|294507180|ref|YP_003571238.1| deoxyribodipyrimidine photo-lyase [Salinibacter ruber M8] gi|294343508|emb|CBH24286.1| Deoxyribodipyrimidine photo-lyase [Salinibacter ruber M8] Length = 483 Score = 335 bits (860), Expect = 9e-90, Method: Composition-based stats. Identities = 134/485 (27%), Positives = 214/485 (44%), Gaps = 33/485 (6%) Query: 8 SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQ-----HGISARQSHFIY 62 S LVW+RNDLR+ D+ L A + D +VI V+ P + +S+ ++ F+ Sbjct: 3 STALVWIRNDLRVRDHAPLRYAADHYD-QVIPVYCFDPRHFGTTMFDLPKMSSIRARFLR 61 Query: 63 ASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKL 122 S+ ++ S+ G + D L Q ++ ++ E + Sbjct: 62 ESVQDLRDSVQDLGADLVVRRGRPED----ILPELVRQTGANEVLQFQEIGGEEEDVETA 117 Query: 123 LEKRLQHRVICKSF-DDSVLLPPGSIL-NHALQMYKVYTPFRKALIQNLVQADLRSLPVP 180 +E L+ F L + + + KVYT FRKA+ + P Sbjct: 118 VEDALRDTGATPGFFWGKTLYHIDDVPFDGPDDIPKVYTNFRKAVEKKSTVRPTLDAPDS 177 Query: 181 AIRLTGPVTPSNIPRFFDYPFQAIDPM-------FPIGEQNALHILRKFCK--EKVYYYV 231 + L + P +IP + F + F GE + ++ + + Y Sbjct: 178 LLPLPEDLNPGSIPTLDELGFDDDGTVDERGVLPFRGGESRGHDRIDEYIWRGDFLKKYK 237 Query: 232 EQRD-IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREF 290 R+ + +++ S +L+ G ++PRQ + E + D + KS + ELIWR+F Sbjct: 238 ATRNGLLGANYSAKFSAWLAHGCITPRQIHEEV-ERYEDQRVDNKS-TYWMKFELIWRDF 295 Query: 291 YRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMH 350 + ++ I + I+W + W G TG P +DA MR+LN G+M Sbjct: 296 FSYVTWKAGERLFRPGGINGND-IDWRYYDESFERWAAGTTGIPFVDANMRELNRTGYMS 354 Query: 351 NRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFN 410 NR R AS L + L +DWR+G YF S+L+D D+ASN G W + + GND P R FN Sbjct: 355 NRGRQNVASMLSQSLKLDWRMGAAYFESRLVDYDVASNWGNWAYNSRVGND--PRARYFN 412 Query: 411 PTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND------LSLNYPLPIVDHK 464 Q KR+D G ++R+WLPEL +VP +Y+H PH + L +YP P+VD Sbjct: 413 IVKQAKRYDENGEYVRYWLPELADVPDKYVHEPHRMSHEQQKKYGCVLGADYPKPVVDLD 472 Query: 465 KACHH 469 K Sbjct: 473 KTYQR 477 >gi|319442565|ref|ZP_07991721.1| deoxyribodipyrimidine photolyase [Corynebacterium variabile DSM 44702] Length = 492 Score = 335 bits (859), Expect = 9e-90, Method: Composition-based stats. Identities = 152/512 (29%), Positives = 222/512 (43%), Gaps = 62/512 (12%) Query: 1 MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIA-TPEQWRQHGISARQSH 59 M +AM+ LVW R+DLR+ DN AL A +VIAV I A S Sbjct: 1 MTDRSAMT--LVWFRDDLRLADNAALEWAAQ--GGEVIAVVIDEDAAATGVRPRGAAASW 56 Query: 60 FIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRR 119 + SL Q+ L + G+ + D ++ + + V + +NR+YE Sbjct: 57 WRERSLSQLAGRLLEHGVPMLHL----AGDPVDIMTALPGLLAVDAVVWNRRYEEPLRFV 112 Query: 120 DKLLEKRLQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLP 178 D +++ LQ SF +L P + + Y+V+TP+ +A V D + Sbjct: 113 DSRIKETLQAGGTEVHSFPGHLLTEPWQVTTGEGRPYRVFTPYSRA--ATPVAEDAVAQL 170 Query: 179 VPAIRLTGPVTPSNIPRFFDYPFQAIDP------------MFPIGEQNALHILRKFCKEK 226 V A + PF + P + GE+ L F Sbjct: 171 VEAAAQVPADLRGPEKDLPEVPFPPVRPVDPAPWAASLADHWTPGEEAGQATLAAFVTGD 230 Query: 227 VY-------YYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAF 279 Y + RDIP T+ LSP+L G +SP + W + VD P + Sbjct: 231 RRTTATGSPGYADGRDIPDADATTGLSPHLRFGEVSPHRVWYAVARA-VDAGDVPAADGS 289 Query: 280 SWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKD----------------SHLL 323 + +EL+WR+F + P + + + W D + L Sbjct: 290 ALHSELLWRDFAWQRLYHRPDLA-SRCVREQFTQFPWRWDNSLPGDVKHLGDATALAQDL 348 Query: 324 QAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDG 383 AW+ G TG P++DA MR+L T GWMHNR+RM+ SFL K+LL DWR GE++F L+D Sbjct: 349 SAWRSGTTGIPLVDAGMRELWTTGWMHNRVRMVVGSFLTKNLLADWRHGEQWFWDTLVDA 408 Query: 384 DLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAP 443 D ASN WQW A G+D+ PYFRIFNP Q K+FDP+ ++ W+PE V + HA Sbjct: 409 DPASNPFNWQWVAGCGDDASPYFRIFNPETQRKKFDPELGYVNRWVPEF--VGPEAAHAG 466 Query: 444 HSWLDKNDLSLNYPLPIVDHKKACHHTLNQYY 475 YP P+VD +++ L Y Sbjct: 467 P-----------YPPPMVDLRESRQRALAAYE 487 >gi|134302253|ref|YP_001122222.1| deoxyribodipyrimidine photolyase [Francisella tularensis subsp. tularensis WY96-3418] gi|134050030|gb|ABO47101.1| deoxyribodipyrimidine photolyase [Francisella tularensis subsp. tularensis WY96-3418] Length = 499 Score = 334 bits (857), Expect = 2e-89, Method: Composition-based stats. Identities = 125/483 (25%), Positives = 213/483 (44%), Gaps = 31/483 (6%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 + +VW + DLR+TDN AL A D ++ ++I E W+Q +S RQ F+ L ++ Sbjct: 1 MQIVWFKRDLRVTDNLALSLASEKGD--ILPLYIIELELWQQPDMSHRQYLFLSECLEEL 58 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEV-RRDKLLEKRL 127 L++ G D++E + + + ++ +++ + +RD LEK Sbjct: 59 NTELTKLGQSLAIM----LGDAVEIFEQLIQKYNIKNVWSHQETWNDWTYQRDIKLEKFF 114 Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187 + I ++ + + + + +++A + + ++ P Sbjct: 115 KQNNIVWHQPYQ-----NGVVRCLADRDNWALLWHQRMSEKIIRAPTKLKFICENQIKIP 169 Query: 188 VTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIP--AIQGTSQL 245 S + D + G AL IL F ++ Y ++ P A + S+L Sbjct: 170 TAESLGLEYDDCYKR-----QKGGRIRALRILDSFLYQRGCGYTKEMSSPVTAFKSCSRL 224 Query: 246 SPYLSIGVLSPRQCWNR-------LKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFY 298 SPY++ GV+S ++ + + +KE V K S S+L+ L W + + Sbjct: 225 SPYIAFGVISLKEIYQKANQRKNEIKESSVKNKTKWLSAMRSFLSRLRWHCHFMQKLEDQ 284 Query: 299 PSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITA 358 PS+ + + + +AWK G TG+P+IDA MR L GW++ R+R + Sbjct: 285 PSIEYENLHSAYDQLRTEPLNQQCFEAWKTGNTGYPMIDACMRALIATGWLNFRMRAMLM 344 Query: 359 SFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRF 418 SF L +DWR+ Y D + + Q +G + RI+NP Q Sbjct: 345 SFASYHLWLDWRVTSLYLARLFTDYEPGIHYSQVQMQ--SGTTGINSIRIYNPIKQSIDQ 402 Query: 419 DPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478 DP G FIR WLPEL NV + IH P WL+K++ SL+YP P +D K+A + Y + Sbjct: 403 DPNGEFIRRWLPELENVSNENIHTP--WLEKHN-SLDYPDPTIDEKQARKFAADNIYKIR 459 Query: 479 KQS 481 K S Sbjct: 460 KSS 462 >gi|303283874|ref|XP_003061228.1| predicted protein [Micromonas pusilla CCMP1545] gi|226457579|gb|EEH54878.1| predicted protein [Micromonas pusilla CCMP1545] Length = 559 Score = 334 bits (857), Expect = 2e-89, Method: Composition-based stats. Identities = 138/549 (25%), Positives = 203/549 (36%), Gaps = 76/549 (13%) Query: 1 MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHF 60 M + + W R LR+ DN AL AC ++ A V +F+ P + A + F Sbjct: 1 MGGEDKTTRSIHWFRKGLRVHDNPALVDACADATA-VQPIFVLDPWFLTPSRVGANRVRF 59 Query: 61 IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120 + SL + SL +G + L +L + E RD Sbjct: 60 LLQSLTDLDASLRARGSSLLVLRGDPKAVVPAAL----RAWGCDRLTHEVDTEPYASARD 115 Query: 121 KLLEKRLQH-RVICKSFDDSVLLPPGSILNH--ALQMYKVYTPFRKALIQNLVQADLRSL 177 + + K+F L +L+ Y F K A Sbjct: 116 AAVRDAAKRVGAEVKTFASHTLYDMERLLSKCPKGAPPTSYASFLKIAGSCGAVAKPAPP 175 Query: 178 PVPAIRLTGP----------------VTPSNIPRFFDYPFQAI--DPMFP--IGEQNALH 217 P ++ + +P + + + D FP GE L Sbjct: 176 PPASMPGSPDGKSHVELVAMIEDVVSSAEVGVPTLEELGYPELPDDEGFPARGGETEGLD 235 Query: 218 ILRKFCKEKVYYYVEQRDIPA--------------------------------------- 238 LR+ K + Q+ + + Sbjct: 236 RLRRMLSRKTWIAEFQKPMTSPTSLWAVVGADGKTQKPANPFEAASKASKSKTVGAEAFL 295 Query: 239 IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFY 298 T+ LSPYL G +SPR ++ LK+ D K + S +L+WREFY Sbjct: 296 APSTTALSPYLKFGCVSPRTFYHELKDVLNDAKGKHSAPPVSLEGQLLWREFYYLAAFGT 355 Query: 299 PSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITA 358 P+ + P +I W D L AW++G TGFP IDA M QL GW+H+ R A Sbjct: 356 PNYHKMEG-NPICRQIPWTWDEERLAAWEEGRTGFPWIDACMHQLRQEGWLHHLARHAVA 414 Query: 359 SFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKR 417 FL + DL V W G + F L+D D A N G W W S YFR++ P GK+ Sbjct: 415 CFLTRGDLFVHWEAGAKVFDRDLVDADPALNYGNWMW-LSCSCFFYQYFRVYGPVSFGKK 473 Query: 418 FDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND------LSLNYPLPIVDHKKACHHTL 471 +D GTFIR +LP L ++P +YI+ P + + ++YP PIVDH A + Sbjct: 474 YDKDGTFIRKYLPVLKDMPAKYIYEPWTAPADVQKKAGCVIGVDYPPPIVDHAVASKECI 533 Query: 472 NQYYAAKKQ 480 + A K Sbjct: 534 EKLAVAYKA 542 >gi|97047702|sp|Q4KML2|CRYD_DANRE RecName: Full=Cryptochrome DASH; AltName: Full=Protein CRY-DASH; Short=zCRY-DASH Length = 520 Score = 334 bits (857), Expect = 2e-89, Method: Composition-based stats. Identities = 133/480 (27%), Positives = 220/480 (45%), Gaps = 31/480 (6%) Query: 5 TAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQ------HGISARQS 58 +A + LRNDLR+ DN+ + A N++ +I ++ P ++ + Sbjct: 2 SASRTVICLLRNDLRLHDNEVFHWAQRNAE-HIIPLYCFDPRHYQGTYHYNFPKTGPFRL 60 Query: 59 HFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVR 118 F+ S+ ++ L + G Q D E + V+ + ++ + E Sbjct: 61 RFLLDSVKDLRALLKKHGSTLLVRQGKPEDVVCELIKQLG---SVSTVAFHEEVASEEKS 117 Query: 119 RDKLLEK-RLQHRVICKSFDDSVLLPPGSILN-HALQMYKVYTPFRKALIQNLVQADLRS 176 ++ L++ Q++V ++F S L + H + VYT FRKA+ + S Sbjct: 118 VEEKLKEICCQNKVRVQTFWGSTLYHRDDLPFSHIGGLPDVYTQFRKAVEAQGRVRPVLS 177 Query: 177 LPVPAIRLTGPVTPSNIPRFFDY----PFQAIDPMFP--IGEQNALHILRKFCKEKVY-- 228 P + IP F P FP GE AL L+ + + Sbjct: 178 TPEQVKSPPSGLEEGPIPTFDSLGQTEPLDDCRSAFPCRGGETEALARLKHYFWDTNAVA 237 Query: 229 YYVEQRD-IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIW 287 Y E R+ + + +++ SP+L++G +SPR + ++K+ V+ + + EL+W Sbjct: 238 TYKETRNGMIGVDFSTKFSPWLALGCISPRYIYEQIKKYEVERT--ANQSTYWVIFELLW 295 Query: 288 REFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIG 347 R++++ + Y + + + + WN D + AWK+G TG P +DA MR+L G Sbjct: 296 RDYFKFVALKYGNRIFYMNGL-QDKHVPWNTDMKMFDAWKEGRTGVPFVDANMRELALTG 354 Query: 348 WMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFR 407 +M NR R ASFL KDL +DWR+G E+F L+D D+ SN G W ++A GND R Sbjct: 355 FMSNRGRQNVASFLTKDLGLDWRLGAEWFEYLLVDHDVCSNYGNWLYSAGIGNDPREN-R 413 Query: 408 IFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPH----SWLDKNDLSLN--YPLPIV 461 FN QG +D G ++R W+PEL + +H P S L +SLN YP PI+ Sbjct: 414 KFNMIKQGLDYDNNGDYVRQWVPELRGIKGGDVHTPWTLSNSALSHAQVSLNQTYPCPII 473 >gi|168067358|ref|XP_001785586.1| photolyase-like protein [Physcomitrella patens subsp. patens] gi|162662787|gb|EDQ49598.1| photolyase-like protein [Physcomitrella patens subsp. patens] Length = 557 Score = 334 bits (857), Expect = 2e-89, Method: Composition-based stats. Identities = 130/491 (26%), Positives = 216/491 (43%), Gaps = 44/491 (8%) Query: 1 MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQ------HGIS 54 M + + +VW RNDLRI+DN+AL A +S A V+ +++ P + Q Sbjct: 57 MTSRKGTGIAIVWFRNDLRISDNEALLKAWQSSQA-VVPLYVVDPRLYGQTYHFGFPKTG 115 Query: 55 ARQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEI 114 ++ FI S+ ++ +L Q+G+ Q D + S ++ +++ Sbjct: 116 ELRAQFIMESVANLRDNLRQRGLDLIVRQGKPED----VVPSIAKSIGAHTVYAHKETCS 171 Query: 115 NEVRRDKLLEKRLQH-------RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQ 167 E + +++ L + ++ L + ++ VYT FRK + Sbjct: 172 EETTVETGVKRGLANLEGGPKMQIRLDFVWGGTLYHLDDLPFSPSELPDVYTQFRKGVEY 231 Query: 168 NLVQADLRSLPVPAIRLTGPVTP-----SNIPRFFDYPFQAIDP------MFPIGEQNAL 216 N +P L ++ +IP + + + F GE AL Sbjct: 232 NCKVRPALKMPTQMGPLPESLSEKIGELGDIPTMAELGLKYREQSPLGVMHFEGGETAAL 291 Query: 217 HILRKFCKEKV--YYYVEQRD-IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIK 273 L+ + K Y E R+ + +++ SP+L+ G LSPR + +K + + Sbjct: 292 ARLQDYFWNKDQLKIYKETRNGMLGANYSTKFSPWLAHGCLSPRTIHDEVKRYETERV-- 349 Query: 274 PKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGF 333 + L ELIWR+++R + Y + W+++ L +AW++G TG+ Sbjct: 350 ANDSTYWVLFELIWRDYFRFVSIKYGNAIFHLGGPRKVVGKRWSQNRELFEAWREGRTGY 409 Query: 334 PIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQ 393 P+IDA M++L G+M NR R I SFLV+DL +DWR+G E+F + LLD D SN G W Sbjct: 410 PLIDANMKELAATGFMSNRGRQIVCSFLVRDLGLDWRMGGEWFETCLLDYDPCSNYGNWT 469 Query: 394 WAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLS 453 + A GND R F+ Q +DP+G ++ HWLP L P + + P Sbjct: 470 YGAGVGNDPRE-DRYFSIPKQSATYDPEGEYVAHWLPSLKQSPPKQRNFP---------G 519 Query: 454 LNYPLPIVDHK 464 Y PIV K Sbjct: 520 DAYLRPIVPLK 530 >gi|317123324|ref|YP_004097436.1| deoxyribodipyrimidine photo-lyase type I [Intrasporangium calvum DSM 43043] gi|315587412|gb|ADU46709.1| deoxyribodipyrimidine photo-lyase type I [Intrasporangium calvum DSM 43043] Length = 455 Score = 334 bits (857), Expect = 2e-89, Method: Composition-based stats. Identities = 148/478 (30%), Positives = 220/478 (46%), Gaps = 28/478 (5%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M+V ++W R DLR++D+ AL AA +S V+ VF+ P +S + SL Sbjct: 1 MTVSVLWFRRDLRVSDHPALLAAL-DSGTSVLPVFVLDPRLLET---GQPRSRRLITSLR 56 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 + SL H + ++ + + + R+ RD +E Sbjct: 57 ALADSLD-------GHLVVRTGNPVDVIPQVAREVGAESVHVTRETTPFGRTRDAAVEVA 109 Query: 127 LQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185 LQ + PG ++ + Y+V+TPF +A + + P+ Sbjct: 110 LQSEGRRLVATGTPYAAGPGLVVTQSGAPYRVFTPFARAWRAHGSP-PPAAPPLRIPWFD 168 Query: 186 GPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKE-KVYYYVEQRDIPAIQGTSQ 244 G V +P F E ++ Y E RD P + TS+ Sbjct: 169 GDVGGLALPAVAAAGGPGGIAGEAAART----RWLDFLAEGRLGRYAEDRDRPDLDATSR 224 Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304 +S L G + PR + GA +++ EL WREFY ++ P Sbjct: 225 MSVPLKYGEIHPRTLLADIASH----PDGRTGGAATFVTELAWREFYADVLWHRPESAW- 279 Query: 305 KPFIPWTEKIEWNKDSH---LLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFL 361 + P ++ ++ L+ AW++G TG+PI+DA MRQL GWMHNRLRMITASFL Sbjct: 280 EDLRPDLGRMSYDDGPETDRLVAAWREGRTGYPIVDAGMRQLLGEGWMHNRLRMITASFL 339 Query: 362 VKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQ 421 KDL V W +G YF+ QLLDGD+ASN+ GWQW A TG D+ PYFR+ NP Q RFDP+ Sbjct: 340 TKDLHVWWPVGARYFLDQLLDGDIASNSHGWQWVAGTGTDAAPYFRVLNPLRQAHRFDPE 399 Query: 422 GTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479 G ++R W+PEL ++ +H P W N + YP +VDH L +Y +++ Sbjct: 400 GDYVRRWVPELGHLAGPAVHEP--WDHPNGYAHGYPGRVVDHDAERREALARYELSRR 455 >gi|307103112|gb|EFN51376.1| hypothetical protein CHLNCDRAFT_7260 [Chlorella variabilis] Length = 491 Score = 334 bits (856), Expect = 2e-89, Method: Composition-based stats. Identities = 132/493 (26%), Positives = 209/493 (42%), Gaps = 24/493 (4%) Query: 10 HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69 ++W R LR+ DN AL AA +D + +FI P + I + F+ SL + Sbjct: 1 SIIWFRKGLRLHDNPALLAAAAGAD-HLCPIFILDPWFLKSDKIGVNRIQFLLESLTDLD 59 Query: 70 KSLSQKGIVFQYHQC----SNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125 S +G + + + L + VT+L + E RRD + + Sbjct: 60 ASFRARGSRLLVLRGRSEEAPSCQAAASLPGALQEWGVTRLCFEHDTEPYAKRRDVAVRQ 119 Query: 126 RLQH-RVICKSFDDSVLLPPGSILNHALQMYKVYTP-FRKALIQNLVQADLRSLPVPAIR 183 + V + L P +L + F K + A R + P+ Sbjct: 120 LAEAAGVEVVAPVSHTLYDPQVLLQRNGGRAPLTMQSFTKLVDGGGCAAGYRCIAAPSWP 179 Query: 184 LTGPVTPSNI--PRFFDYPFQAIDPM-FPIGEQNALHILRKFCKEKVY--YYVEQRDIPA 238 + S++ P D + F GE AL + + +K + + + + PA Sbjct: 180 QAAALVSSSVAVPSLTDIGYPPTGTTPFKGGESAALARMADYLSDKGWVCAFEKPKGNPA 239 Query: 239 ---IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLM 295 T+ LSPYL G LSPR +L++ + + S +L+WREF+ Sbjct: 240 AFVRPSTTVLSPYLKFGCLSPRLFHAKLQQIYAERNGMHTQPPVSLRGQLLWREFFTLCG 299 Query: 296 AFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRM 355 A P+ P ++I W D + AW+ TG+P IDA M QL GWMH+ R Sbjct: 300 AAIPNFDRM-AGNPICKQIPWVDDPERIAAWEHSRTGYPWIDAIMAQLRQQGWMHHLARH 358 Query: 356 ITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQ 414 A FL + DL W G+ F L+D D + N WQW +++ S YFR+++P Sbjct: 359 SVACFLTRGDLWCSWEAGQAVFDKYLIDADWSLNAANWQWLSASAFFSQ-YFRVYSPIAF 417 Query: 415 GKRFDPQGTFIRHWLPELNNVPTQYIHAPHSW------LDKNDLSLNYPLPIVDHKKACH 468 GK++D G +IR +LP L ++P +YI+ P + + +YP PIVDH+ A Sbjct: 418 GKQYDKNGDYIRRFLPVLKDMPVRYIYEPWTAPLSVQQAAGCVVGKDYPRPIVDHQAAMK 477 Query: 469 HTLNQYYAAKKQS 481 + + AA S Sbjct: 478 ENMARMKAAYGAS 490 >gi|116075315|ref|ZP_01472575.1| Deoxyribodipyrimidine photolyase [Synechococcus sp. RS9916] gi|116067512|gb|EAU73266.1| Deoxyribodipyrimidine photolyase [Synechococcus sp. RS9916] Length = 507 Score = 334 bits (856), Expect = 3e-89, Method: Composition-based stats. Identities = 121/482 (25%), Positives = 199/482 (41%), Gaps = 35/482 (7%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 LVW + DLR DN+ L AC + V+ ++I PE WRQ SARQ F SL + Sbjct: 8 PQLVWFKRDLRTVDNRPLLEACAHG--PVLPLYIVEPEYWRQPDASARQWEFCRESLEHL 65 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYE-INEVRRDKLLEKRL 127 ++ L+ G +++ L+ + ++ + + RD+ + Sbjct: 66 RRELAALGQPLVVR----CGEAVTVLERARRSLGIAAIWSHEETGNGFTYDRDRAVLAWT 121 Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187 + R I +P + + + + + + L + LP+ + L Sbjct: 122 RDRGIPWIQ-----IPQFGVTRGLKRREGWARRWEERMAEPLAPEPPKLLPLSDLALGEI 176 Query: 188 VTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIP--AIQGTSQL 245 T + D G ++ L L F +V Y P A +G S+L Sbjct: 177 PTAEALQLSPD----PCPLRQRGGRESGLQELSDFLTSRVQRYARSISSPVVAFRGCSRL 232 Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305 SPYL+ G LS R+ + G S+ + L W + + P++ Sbjct: 233 SPYLTWGCLSMREVVQASRTLT-------GRGVSSFGSRLHWHCHFIQKLESEPAIEFH- 284 Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365 F P+ I DS QAWK+G TG P +DA MR L GW++ R+R + SF L Sbjct: 285 DFHPFMRGIR-PMDSERFQAWKEGRTGVPFVDACMRALLAHGWINFRMRAMLMSFASYHL 343 Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425 + WR + Q +D + + Q +G+ ++ RI+NP QG+ DP G FI Sbjct: 344 WLPWRESGLHLARQFVDYEPGIHWSQCQMQ--SGSTAINTIRIYNPVKQGQDHDPNGRFI 401 Query: 426 RHWLPELNNVPTQYIHAPHSWLDK------NDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479 R W PEL ++P Y+H P + L ++YP P+VD A ++ + ++ Sbjct: 402 REWCPELASLPNVYLHEPWKLDARRAEQLGCRLGVDYPAPVVDPTAAAREAKDRIWEIRR 461 Query: 480 QS 481 + Sbjct: 462 AA 463 >gi|302772993|ref|XP_002969914.1| hypothetical protein SELMODRAFT_92414 [Selaginella moellendorffii] gi|300162425|gb|EFJ29038.1| hypothetical protein SELMODRAFT_92414 [Selaginella moellendorffii] Length = 559 Score = 333 bits (855), Expect = 3e-89, Method: Composition-based stats. Identities = 135/507 (26%), Positives = 236/507 (46%), Gaps = 38/507 (7%) Query: 5 TAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYAS 64 + + +LVW R DLR+ D A N+ V+ +FI P + + ++ S Sbjct: 3 NSKACNLVWFRRDLRVED-NPALLAAANAPGVVLPIFIWCPAEEGEFQPGRHSRWWLKQS 61 Query: 65 LLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQY-EINEVRRDKLL 123 L+ + SL+ G + + D++ L + T++F N Y + V RD+ + Sbjct: 62 LIHLDASLASYGCSLLLQKGN---DTLSVLVNIARATGSTQIFCNHLYADPITVARDRRV 118 Query: 124 EKRL-QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRS------ 176 ++RL ++ + +F+ L P I + + + F ++ + D+ Sbjct: 119 KQRLLEYGIFVHNFNCDTLHEPWEIYDEQGHAFTTFAGFWNRFLRTRFEPDMPDSSQARL 178 Query: 177 --------LPVPAIRLTGPVTPSNIPRFFDYPFQAIDPM----FPIGEQNALHILRKFCK 224 L A L P + + D ++ + + + G ++A L+ F Sbjct: 179 FPYREYLDLISFAGNLPTPCSIEELC-LEDESEKSSNELLARTWSPGCKHANDALQAFLV 237 Query: 225 EKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVD--LLIKPKSGAFSWL 282 + Y R+ A TS LSPYL G LS R+ +N ++ + D L P+ A +L Sbjct: 238 GPLNDYTTSRET-ADNSTSHLSPYLHFGELSIRKLYNCIRSKQRDEEQLFCPRRNAHLFL 296 Query: 283 NELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQ 342 + RE+ R++ +P + W D +AWK G TG+P++DAAMR+ Sbjct: 297 RAIGLREYSRYISFHFPFTQE----QSLLKNFPWRNDEIHFKAWKLGKTGYPLVDAAMRE 352 Query: 343 LNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDS 402 L + GW+H +LR++T+SFL+K L + W G +YF LLD DL S+ GW++ + D Sbjct: 353 LWSTGWLHCKLRVVTSSFLIKFLQLPWTWGIKYFWDTLLDADLESDILGWKYVSGCLTDG 412 Query: 403 VPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSW------LDKNDLSLNY 456 R+ +P +G + DP+G ++R WLPEL+ +P Q+IH P+S +L NY Sbjct: 413 HELDRVLDPHEEGCKLDPKGEYVRRWLPELSRLPNQWIHHPYSAPVSRLQAAGVELGTNY 472 Query: 457 PLPIVDHKKACHHTLNQYYAAKKQSLL 483 P PIVD + A + + ++++ + Sbjct: 473 PKPIVDMEVAKYRLSQAVKSMREKNSV 499 >gi|27882257|gb|AAH44385.1| Cry4 protein [Danio rerio] Length = 579 Score = 333 bits (855), Expect = 3e-89, Method: Composition-based stats. Identities = 131/496 (26%), Positives = 210/496 (42%), Gaps = 30/496 (6%) Query: 3 ATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWR-QHGISARQSHFI 61 A + ++HL R LR+ DN +L A +S + V++ + + A + F+ Sbjct: 21 AMSHRTIHL--FRKGLRLHDNPSLLGALASSST-LYPVYVLDRVFLQGAMHMGALRWRFL 77 Query: 62 YASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDK 121 SL + L G S L Q +T++ Y+ + E R DK Sbjct: 78 LQSLEDLDTRLRAIGSRLFVLCGST----ANILRELVAQWGITQISYDTEVEPYYTRMDK 133 Query: 122 LLEKRLQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVP 180 ++ Q + + L I+ + ++ L + + + V Sbjct: 134 DIQTVAQENGLQTYTCISHTLYDVKRIVKANGGSPPLTYKKFLHVLSVLGEPEKPARDVS 193 Query: 181 AIRLTGPVTPSNIPR------FFDYPFQ-AIDPMFPIGEQNALHILRKFCKEKVY--YYV 231 VTP ++ R D Q + ++P GE +AL L K + + + + Sbjct: 194 IEDFQRCVTPVDVDRVYAVPSLADLGLQVEAEVLWPGGESHALQRLEKHFQSQGWVANFS 253 Query: 232 EQRDIPA--IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWRE 289 + R IP + T+ LSPYLS+G LS R ++RL + S +++WRE Sbjct: 254 KPRTIPNSLLPSTTGLSPYLSLGCLSVRTFYHRLNSIYAQSK-NHSLPPVSLQGQVLWRE 312 Query: 290 FYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWM 349 F+ + + P+ + +I+W D L+ W+ TGFP IDA M QL GW+ Sbjct: 313 FFYTVASATPNFTKMEG-NSICLQIDWYHDPERLEKWRTAQTGFPWIDAIMTQLRQEGWI 371 Query: 350 HNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRI 408 H+ R A FL + DL + W G + F LLD D + N G W W +++ Y RI Sbjct: 372 HHLARHAVACFLTRGDLWITWEEGMKVFEEFLLDADYSVNAGNWMWLSASAFFHK-YTRI 430 Query: 409 FNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDK------NDLSLNYPLPIVD 462 F P G+R DPQG ++R +LP L N P+QYI+ P + + +YP PIV Sbjct: 431 FCPVRFGRRTDPQGEYLRKYLPVLKNFPSQYIYEPWKAPEDVQLSAGCIIGKDYPRPIVS 490 Query: 463 HKKACHHTLNQYYAAK 478 H +A L + Sbjct: 491 HIEASQRNLALMRQVR 506 >gi|254462785|ref|ZP_05076201.1| deoxyribodipyrimidine photolyase family protein [Rhodobacterales bacterium HTCC2083] gi|206679374|gb|EDZ43861.1| deoxyribodipyrimidine photolyase family protein [Rhodobacteraceae bacterium HTCC2083] Length = 511 Score = 333 bits (855), Expect = 3e-89, Method: Composition-based stats. Identities = 116/487 (23%), Positives = 194/487 (39%), Gaps = 29/487 (5%) Query: 6 AMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASL 65 + + +VW + DLR D+ L AA S++ VI ++I PE W+Q S R HFI+ L Sbjct: 2 SHAPSIVWFKRDLRNHDHAPLLAASQ-SNSPVIPLYIVEPEYWQQAFASRRHWHFIHDCL 60 Query: 66 LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYE-INEVRRDKLLE 124 + + +L+ G D + L Q V ++ + + RD + Sbjct: 61 VDLNIALTDLGQPLIVR----VGDVCDVLAQLHEQHGVGDVYMHEETGNSWTYDRDLKVG 116 Query: 125 KRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL 184 K R I S P ++ + +N+ +P + Sbjct: 117 KLCLDRNI-----SSHEFPTNGVVRRLRSRDDWSKIRNVRMAENITAKPNNLVPTLGCQS 171 Query: 185 TGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ--GT 242 + + I + G A+ L+ F + Y+ P++ Sbjct: 172 DSLPEKDDPM----FGNTPIGKVQKGGRTQAVADLQSFLNHRCQKYLHHISAPSLSDVHC 227 Query: 243 SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGA----FSWLNELIWREFYRHLMAFY 298 S+LS +L+ G LS R+ + + + L K ++ + L WR + + Sbjct: 228 SRLSTHLAWGALSVREVVHSVAKRHAQLTPLEKKSYGRNLSAFGSRLAWRCHFVQKIEDQ 287 Query: 299 PSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITA 358 P + + E+ + QAW G TG+P +DA MR L GW+ R+R + Sbjct: 288 PEIETHCMHPAFEGLREYEHNEAHYQAWATGNTGYPFVDACMRSLIAEGWITFRMRAMLV 347 Query: 359 SFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRF 418 SF L +DWR+ ++ D + + Q +G + R++NP Q Sbjct: 348 SFASYQLWLDWRVSGDHLARLFTDFEPGIHYSQLQMQ--SGVTGINTMRVYNPIKQSLEH 405 Query: 419 DPQGTFIRHWLPELNNVPTQYIHAPHSW------LDKNDLSLNYPLPIVDHKKACHHTLN 472 DP G FIR W+PEL NVP ++IH P +W +L +YP PIV+H A + Sbjct: 406 DPTGAFIRKWVPELTNVPDEFIHEPWTWEKTLLDQRDFELGQDYPAPIVEHSFAANAAKQ 465 Query: 473 QYYAAKK 479 + A +K Sbjct: 466 KIAAVRK 472 >gi|284033744|ref|YP_003383675.1| deoxyribodipyrimidine photo-lyase [Kribbella flavida DSM 17836] gi|283813037|gb|ADB34876.1| Deoxyribodipyrimidine photo-lyase [Kribbella flavida DSM 17836] Length = 437 Score = 333 bits (855), Expect = 3e-89, Method: Composition-based stats. Identities = 148/468 (31%), Positives = 223/468 (47%), Gaps = 34/468 (7%) Query: 10 HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69 ++W R DLR+ DN AL A D +V VF+ P W G R++ + + + Sbjct: 3 AVMWFRRDLRLADNPALLDAVAAGDGRVAGVFVLDPALWDAAG-DPRRAQLLSSL----R 57 Query: 70 KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH 129 + + D + + + Y VRRD+ +E L Sbjct: 58 SLSAAMDGKLVVRRG----DPATVIPELAAELGAASVHVTTDYGPYGVRRDQAVENALSC 113 Query: 130 RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189 ++ + PG ILN + Y+V+TP+ +A +++ + P T Sbjct: 114 PLVAT--GSPYAVAPGRILNGQGRSYQVFTPYFRAWLEHGWRQPAE----------APAT 161 Query: 190 PSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYL 249 I D A + GE A ++ V Y ++R+ P + TS++S L Sbjct: 162 IEWIAARGD-ALPAAGTIEGAGEVAAREHWTQWLAS-VGQYDDERNRPDLDSTSRMSVPL 219 Query: 250 SIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIP 309 G + PR DL P +GA ++ EL WR+F L+A YP KP P Sbjct: 220 KYGEIHPRTMLT-------DLARHPGAGADAYRRELAWRDFCADLLARYPQAAW-KPLRP 271 Query: 310 WTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDW 369 E++ +++ AW +G TG+PI+DA MRQL G++HNR+RM+ ASFLVKDL V W Sbjct: 272 EFERMVYDEPGDAFTAWCEGRTGYPIVDAGMRQLAASGFVHNRIRMVVASFLVKDLHVHW 331 Query: 370 RIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWL 429 + G +FM++L DGDLASN+ WQW A G D PY+R+FNP QG +FDP G+++R W+ Sbjct: 332 KYGARWFMARLRDGDLASNSLNWQWVAGCGADPSPYYRVFNPITQGLKFDPDGSYVRRWV 391 Query: 430 PELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477 PEL ++P + +H P PIVDH +A +L +Y A Sbjct: 392 PELADLPGKSVHEPWKLAAPPAGYP---APIVDHAEARLESLRRYDAI 436 >gi|120403248|ref|YP_953077.1| deoxyribodipyrimidine photo-lyase [Mycobacterium vanbaalenii PYR-1] gi|119956066|gb|ABM13071.1| deoxyribodipyrimidine photo-lyase type I [Mycobacterium vanbaalenii PYR-1] Length = 442 Score = 333 bits (855), Expect = 3e-89, Method: Composition-based stats. Identities = 146/449 (32%), Positives = 217/449 (48%), Gaps = 31/449 (6%) Query: 32 NSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSI 91 D +V+A ++ P + R+ ++Y +L ++ +L + +V H + Sbjct: 21 EGDGEVLACYVLDPRL--KSSSGPRRLQYLYDALRDLRDNLDGRLLVTHGHP-------V 71 Query: 92 EWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHA 151 + + T + + + RRD + L V + L+ PG + Sbjct: 72 QRIPLLAKAVGATSVHVSEDFTPFGRRRDDQVRDALG-GVELVATGSPYLVSPGRVTKAD 130 Query: 152 LQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIG 211 YKV+TPF A + + S P A R P + P D P + P G Sbjct: 131 GTPYKVFTPFFAAWRTHGWRPPAGSGPASA-RWIDPDDVTGGPAAADIPDTGLQLELPAG 189 Query: 212 EQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLL 271 E AL +F ++ + Y E R+ P + TS++S +L G + PR Sbjct: 190 ETAALRAWTRFTRDGLADYDEDRNRPDLAATSRMSAHLKFGAIHPRTM---------AAD 240 Query: 272 IKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHL---LQAWKQ 328 + GA ++L EL +R+FY ++A +P + + IE + D AWKQ Sbjct: 241 LGRGEGAQAYLRELAFRDFYASVLAEWPDSAWWN-WNTAFDAIEVDDDGDAQKSFAAWKQ 299 Query: 329 GYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASN 388 G TGFPI+DA MRQL G+MHNR+RMITASFLVKDL + W+ G +F+ QL+DGD+A+N Sbjct: 300 GRTGFPIVDAGMRQLAETGFMHNRVRMITASFLVKDLHLPWQWGARWFLEQLVDGDIANN 359 Query: 389 NGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLD 448 GWQWAA G D+ PYFR+FNP+ QGK+FDP G ++R W+PEL +V + Sbjct: 360 QHGWQWAAGCGTDAAPYFRVFNPSTQGKKFDPSGDYVRRWVPELADVDDVH-------KL 412 Query: 449 KNDLSLNYPLPIVDHKKACHHTLNQYYAA 477 D YP PIVDH + L +Y A Sbjct: 413 DGDRPDGYPEPIVDHGQERAEALRRYRAI 441 >gi|256790273|ref|ZP_05528704.1| deoxyribodipyrimidine photolyase [Streptomyces lividans TK24] gi|289774148|ref|ZP_06533526.1| deoxyribodipyrimidine photolyase [Streptomyces lividans TK24] gi|289704347|gb|EFD71776.1| deoxyribodipyrimidine photolyase [Streptomyces lividans TK24] Length = 457 Score = 333 bits (855), Expect = 3e-89, Method: Composition-based stats. Identities = 133/477 (27%), Positives = 227/477 (47%), Gaps = 24/477 (5%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M+V +V +DLR+ D+ L+AA +D +V+ +F+ + + F+ L Sbjct: 1 MTVAVVLFTSDLRLHDHPPLHAALQAAD-EVVPLFVRDTGIHAAGFDAPNRRAFLADCLS 59 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 + SL +G + + S Q T++ RR++ L + Sbjct: 60 DLDSSLRHRGGRLVVRDGPV----VREVRSVAAQCGSTEVHVAAGVTGYAHRREERLREG 115 Query: 127 LQHRVICKSFDDSVL--LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL 184 L+ + + V+ + PG++ V+TP+ + + + L + +R+ Sbjct: 116 LRDDGVSLHVHEPVITAVAPGAVTPAGSDHVAVFTPYFRRWSRESPRKPLAAP--RTVRV 173 Query: 185 TGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244 V +P D A + GE ++ + + Y ++ D A TS+ Sbjct: 174 PRGVRGEPLPDRADV-AGASPGLPAGGETAGRDRFARWSRSGLSRYEDRHDDLADDATSR 232 Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304 LSPYL G LSP + +R + GA +++ ++ WR+F+ ++A P + Sbjct: 233 LSPYLHFGALSPLELVHRARAH-------GGPGAEAFVRQVCWRDFHHQVLAARPEASV- 284 Query: 305 KPFIPWTEKIEWNKDS-HLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363 K + ++ +D+ + AW+ G TG+P++DAAMRQL GWMHNR R++ A FL K Sbjct: 285 KDYRTRHDRWRGEEDAAEDIAAWRDGRTGYPVVDAAMRQLRHQGWMHNRARLLVAGFLTK 344 Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423 L VDWRIG +F+ L+DGD+ +N WQWAA TG D+ P+ R+ NP +Q +RFDP G Sbjct: 345 TLYVDWRIGARHFLDLLVDGDVVNNQLNWQWAAGTGTDTRPH-RVLNPLVQARRFDPDGV 403 Query: 424 FIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQ 480 ++R W+PEL +V +H P L+YP P+V+ L ++ A+ + Sbjct: 404 YVRRWVPELRSVEGGKVHEPWRLAAAERGELDYPDPLVELADG----LARFKHARGR 456 >gi|302548942|ref|ZP_07301284.1| deoxyribodipyrimidine photolyase [Streptomyces viridochromogenes DSM 40736] gi|302466560|gb|EFL29653.1| deoxyribodipyrimidine photolyase [Streptomyces viridochromogenes DSM 40736] Length = 458 Score = 333 bits (854), Expect = 3e-89, Method: Composition-based stats. Identities = 141/478 (29%), Positives = 221/478 (46%), Gaps = 30/478 (6%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M V +V +DLR+ D+ L AA ++ V+ +F+ + + F+ L Sbjct: 1 MHVSVVLFTSDLRLRDHPPLRAALDSAGT-VVPLFVRDRAVTEAGFAAPNRGAFLADCLT 59 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 + SL ++G D +E + + ++ + RR+ L + Sbjct: 60 DLDSSLRERGGRLVV----CSGDLVEEVCRVVTEADADEVHMAAAHSRFATRREDALRRA 115 Query: 127 LQHRVICKSFDDSVLL--PPGSILNHALQMYKVYTPFRKALIQ---NLVQADLRSLPVPA 181 L+ D+V + PPG + + V+TP+ + Q V A R +PVP Sbjct: 116 LEADGRRLFVHDAVTVAVPPGEVTPSGSDHFAVFTPYHRQWAQARLRDVVAAPRRVPVPE 175 Query: 182 IRLTGPVTPSNIPRFFDYPFQAIDPMFP-IGEQNALHILRKFCKEKVYYYVEQRDIPAIQ 240 P+ + I P P GE + + + + Y + RD A Sbjct: 176 HVKGEPLPARD-------DVPGISPALPAGGESEGRKRVTAYWRRGLGAYDDTRDDLAAD 228 Query: 241 GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPS 300 TS+LS +L G LSP + +R + GA + + +L WR+F+R ++A P Sbjct: 229 STSRLSAHLHFGTLSPVELIHRARRH-------GGPGAEALVRQLAWRDFHRQVLAARPD 281 Query: 301 VCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASF 360 ++AW+QG TG+P+IDAAMRQL GWMHNR R++TASF Sbjct: 282 AAHTDYRTQRDRWRTERTAGDDIEAWRQGRTGYPVIDAAMRQLRHEGWMHNRARLLTASF 341 Query: 361 LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDP 420 L K L VDWRIG +F+ L+DGD+A+N WQW A TG D+ P R+ NP Q KR+DP Sbjct: 342 LTKTLYVDWRIGAAHFLHWLVDGDVANNQLNWQWMAGTGTDTRP-NRVLNPVTQAKRYDP 400 Query: 421 QGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478 GT++R W+PEL + +H P + +L+YP P+V + L+++ A+ Sbjct: 401 DGTYVRRWVPELAGLDAPAVHEPWKLPGLDRAALDYPDPVVPLSEG----LDRFRRAR 454 >gi|45387783|ref|NP_991249.1| cryptochrome DASH [Danio rerio] gi|41688004|dbj|BAD08600.1| cryptochrome dash [Danio rerio] Length = 520 Score = 333 bits (854), Expect = 3e-89, Method: Composition-based stats. Identities = 132/480 (27%), Positives = 219/480 (45%), Gaps = 31/480 (6%) Query: 5 TAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQ------HGISARQS 58 +A + LRNDLR+ DN+ + A N++ +I ++ P ++ + Sbjct: 2 SASRTVICLLRNDLRLHDNEVFHWAQRNAE-HIIPLYCFDPRHYQGTYHYNFPKTGPFRL 60 Query: 59 HFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVR 118 F+ S+ ++ L + G Q D E + V+ + ++ + E Sbjct: 61 RFLLDSVKDLRALLKKHGSTLLVRQGKPEDVVCELIKQLG---SVSTVAFHEEVASEEKS 117 Query: 119 RDKLLEK-RLQHRVICKSFDDSVLLPPGSILN-HALQMYKVYTPFRKALIQNLVQADLRS 176 ++ L++ Q++V ++F S L + H + VYT FRKA+ + S Sbjct: 118 VEEKLKEICCQNKVRVQTFWGSTLYHRDDLPFSHIGGLPDVYTQFRKAVEAQGRVRPVLS 177 Query: 177 LPVPAIRLTGPVTPSNIPRFFDY----PFQAIDPMFP--IGEQNALHILRKFCKEKVY-- 228 P + IP F P FP GE AL L+ + + Sbjct: 178 TPEQVKSPPSGLEEGPIPTFDSLGQTEPLDDCRSAFPCRGGETEALARLKHYFWDTNAVA 237 Query: 229 YYVEQRD-IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIW 287 Y E R+ + + +++ SP+L++G +SPR + ++K+ V+ + + EL+W Sbjct: 238 TYKETRNGMIGVDFSTKFSPWLALGCISPRYIYEQIKKYEVERT--ANQSTYWVIFELLW 295 Query: 288 REFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIG 347 R++++ + Y + + + + W D + AWK+G TG P +DA MR+L G Sbjct: 296 RDYFKFVALKYGNRIFYMNGL-QDKHVPWKTDMKMFDAWKEGRTGVPFVDANMRELALTG 354 Query: 348 WMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFR 407 +M NR R ASFL KDL +DWR+G E+F L+D D+ SN G W ++A GND R Sbjct: 355 FMSNRGRQNVASFLTKDLGLDWRLGAEWFEYLLVDHDVCSNYGNWLYSAGIGNDPREN-R 413 Query: 408 IFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPH----SWLDKNDLSLN--YPLPIV 461 FN QG +D G ++R W+PEL + +H P S L +SLN YP PI+ Sbjct: 414 KFNMIKQGLDYDNNGDYVRQWVPELRGIKGGDVHTPWTLSNSALSHAQVSLNQTYPCPII 473 >gi|83814331|ref|YP_445305.1| deoxyribodipyrimidine photolyase [Salinibacter ruber DSM 13855] gi|83755725|gb|ABC43838.1| deoxyribodipyrimidine photolyase [Salinibacter ruber DSM 13855] Length = 483 Score = 333 bits (854), Expect = 4e-89, Method: Composition-based stats. Identities = 133/485 (27%), Positives = 213/485 (43%), Gaps = 33/485 (6%) Query: 8 SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQ-----HGISARQSHFIY 62 S LVW+RNDLR+ D+ L A + D +VI V+ P + +S+ ++ F+ Sbjct: 3 STALVWIRNDLRVRDHAPLRYAADHYD-QVIPVYCFDPRHFGTTMFDLPKMSSIRARFLR 61 Query: 63 ASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKL 122 S+ ++ S+ G D L Q ++ ++ E + Sbjct: 62 ESVQDLRDSVQDLGADLVVRGGRPED----ILPELVRQTGANEVLQFQEIGGEEEDVETA 117 Query: 123 LEKRLQHRVICKSF-DDSVLLPPGSIL-NHALQMYKVYTPFRKALIQNLVQADLRSLPVP 180 +E L+ F L + + + KVYT FRKA+ + P Sbjct: 118 VEDALRDTGATPGFFWGKTLYHIDDVPFDGPDDIPKVYTNFRKAVEKKSTVRPTLDAPDS 177 Query: 181 AIRLTGPVTPSNIPRFFDYPFQAIDPM-------FPIGEQNALHILRKFCK--EKVYYYV 231 + L + P +IP + F + F GE + ++ + + Y Sbjct: 178 LLPLPEDLNPGSIPTLDELGFDDDGTVDERGVLPFRGGESRGHDRIDEYIWRGDFLKKYK 237 Query: 232 EQRD-IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREF 290 R+ + +++ S +L+ G ++PRQ + E + D + KS + ELIWR+F Sbjct: 238 ATRNGLLGANYSAKFSAWLAHGCITPRQIHEEV-ERYEDQRVDNKS-TYWMKFELIWRDF 295 Query: 291 YRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMH 350 + ++ I + I+W + W G TG P +DA MR+LN G+M Sbjct: 296 FSYVTWKAGERLFRPGGINGND-IDWRYYDKSFERWAAGTTGIPFVDANMRELNRTGYMS 354 Query: 351 NRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFN 410 NR R AS L + L +DWR+G YF S+L+D D+ASN G W + + GND P R FN Sbjct: 355 NRGRQNVASMLSQSLKLDWRMGAAYFESRLVDYDVASNWGNWAYNSRVGND--PRARYFN 412 Query: 411 PTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND------LSLNYPLPIVDHK 464 Q KR+D G ++R+WLPEL +VP +Y+H P+ + L +YP P+VD Sbjct: 413 IVKQAKRYDENGEYVRYWLPELADVPDKYVHEPNRMSHEQQKKYGCVLGADYPKPVVDLD 472 Query: 465 KACHH 469 K Sbjct: 473 KTYQR 477 >gi|197246983|gb|AAI64413.1| Cry4 protein [Danio rerio] Length = 558 Score = 333 bits (854), Expect = 4e-89, Method: Composition-based stats. Identities = 130/494 (26%), Positives = 209/494 (42%), Gaps = 30/494 (6%) Query: 5 TAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWR-QHGISARQSHFIYA 63 + ++HL R LR+ DN +L A +S + V++ + + A + F+ Sbjct: 2 SHRTIHL--FRKGLRLHDNPSLLGALASSST-LYPVYVLDRVFLQGAMHMGALRWRFLLQ 58 Query: 64 SLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLL 123 SL + L G S L Q +T++ Y+ + E R DK + Sbjct: 59 SLEDLDTRLRAIGSRLFVLCGST----ANILRELVAQWGITQISYDTEVEPYYTRMDKDI 114 Query: 124 EKRLQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAI 182 + Q + + L I+ + ++ L + + + V Sbjct: 115 QTVAQENGLQTYTCISHTLYDVKRIVKANGGSPPLTYKKFLHVLSVLGEPEKPARDVSIE 174 Query: 183 RLTGPVTPSNIPR------FFDYPFQ-AIDPMFPIGEQNALHILRKFCKEKVY--YYVEQ 233 VTP ++ R D Q + ++P GE +AL L K + + + + + Sbjct: 175 DFQRCVTPVDVDRVYAVPSLADLGLQVEAEVLWPGGESHALQRLEKHFQSQGWVANFSKP 234 Query: 234 RDIPA--IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFY 291 R IP + T+ LSPYLS+G LS R ++RL + S +++WREF+ Sbjct: 235 RTIPNSLLPSTTGLSPYLSLGCLSVRTFYHRLNSIYAQSK-NHSLPPVSLQGQVLWREFF 293 Query: 292 RHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHN 351 + + P+ + +I+W D L+ W+ TGFP IDA M QL GW+H+ Sbjct: 294 YTVASATPNFTKMEG-NSICLQIDWYHDPERLEKWRTAQTGFPWIDAIMTQLRQEGWIHH 352 Query: 352 RLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFN 410 R A FL + DL + W G + F LLD D + N G W W +++ Y RIF Sbjct: 353 LARHAVACFLTRGDLWITWEEGMKVFEEFLLDADYSVNAGNWMWLSASAFFHK-YTRIFC 411 Query: 411 PTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDK------NDLSLNYPLPIVDHK 464 P G+R DPQG ++R +LP L N P+QYI+ P + + +YP PIV H Sbjct: 412 PVRFGRRTDPQGEYLRKYLPVLKNFPSQYIYEPWKAPEDVQLSAGCIIGKDYPRPIVSHI 471 Query: 465 KACHHTLNQYYAAK 478 +A L + Sbjct: 472 EASQRNLALMRQVR 485 >gi|254577919|ref|XP_002494946.1| ZYRO0A13530p [Zygosaccharomyces rouxii] gi|238937835|emb|CAR26013.1| ZYRO0A13530p [Zygosaccharomyces rouxii] Length = 582 Score = 333 bits (854), Expect = 4e-89, Method: Composition-based stats. Identities = 158/498 (31%), Positives = 240/498 (48%), Gaps = 32/498 (6%) Query: 2 KATTAMSVHLVWLRNDLRITDNKALYAACHNSD---AKVIAVFIATPEQWRQHGISARQS 58 KA + W R DLRI+DN AL A +++++VF W H S + Sbjct: 88 KADVEAKTVIHWFREDLRISDNTALCKAIEKQQTDKSQLVSVFTINKHDWIAHLDSNFRL 147 Query: 59 HFIYASLLQVQKSLSQKGIVFQYHQ-------CSNFDDSIEWLDSYCLQQRVTK---LFY 108 F+Y +L + K+L + I + SN W CL+ K L Sbjct: 148 TFLYNALKSLHKALLELSIPLYVIEFNPEEPTLSNSTTFAHWFKDQCLRLSKGKPLFLTA 207 Query: 109 NRQYEINEVRRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQN 168 N +Y +E+ RD + R F D+ ++ P Y V++P+ K + Sbjct: 208 NAEYPTDELYRDIKIFGTTDERFQFNVFHDTCIVEPCIFKTQQNIQYSVFSPWYKKWCAH 267 Query: 169 LVQADL-----RSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFC 223 L+ + V I+ ++ F A + E+ A+ LRK+ Sbjct: 268 LMDKKPNDSLVATSQVKKIQYNEKAFLPDLDFQLPAEFTAQGNVAEASEEAAISRLRKYL 327 Query: 224 KEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLK-----EEFVDLLIKPKSGA 278 ++ + Y E +DI + +S +S YLS+GV+S R N ++ V K Sbjct: 328 EDGIDKYPE-KDILIHESSSHMSAYLSVGVISARTVVNEAFHLVPGDKLVGKSPKDMIPM 386 Query: 279 FSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDA 338 ++ E+ WR+FY+H M+F+P + M PF +E ++W + + W G TG P+IDA Sbjct: 387 EEFIREVAWRDFYKHTMSFWPYLSMDLPFNLASENMKWINEEPNFEKWCYGKTGVPVIDA 446 Query: 339 AMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAAST 398 MR+L G+++NR RMITASFL K+LL+DWR GE +F ++L+D DLASN GGW + +ST Sbjct: 447 IMRKLLLEGYINNRARMITASFLSKNLLIDWRWGERWFRNRLIDCDLASNVGGWGFLSST 506 Query: 399 GNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPL 458 G D+ PYFR+FN Q + FDP G FI+ W+PEL + H HS + K +YP Sbjct: 507 GVDAQPYFRVFNMERQSQAFDPDGEFIKRWVPELKD-----AHNVHSLVQKA---KSYPE 558 Query: 459 PIVDHKKACHHTLNQYYA 476 IVD K + L+ Y Sbjct: 559 AIVDLKGSRQRALDTYSQ 576 >gi|239983112|ref|ZP_04705636.1| deoxyribodipyrimidine photolyase [Streptomyces albus J1074] gi|291454944|ref|ZP_06594334.1| deoxyribodipyrimidine photolyase [Streptomyces albus J1074] gi|291357893|gb|EFE84795.1| deoxyribodipyrimidine photolyase [Streptomyces albus J1074] Length = 457 Score = 333 bits (853), Expect = 4e-89, Method: Composition-based stats. Identities = 134/477 (28%), Positives = 229/477 (48%), Gaps = 24/477 (5%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M+V +V +DLR+ D AL AA +DA V+ +F+ + ++ F+ L Sbjct: 1 MTVSIVLFTSDLRLHDQPALRAALDATDA-VVPLFVRDDAVAEAGFAAPNRAAFLADCLT 59 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 + SL ++G D +E + + ++ RR++ L + Sbjct: 60 DLDHSLRERGGRLVIRSG----DLVEEVCRVVTEADADEVHLAEGVSAFARRREERLREA 115 Query: 127 LQHRV--ICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL 184 L+ + + LPPG++ + + V+TP+ + + ++ L + +R+ Sbjct: 116 LESEGRRLFVHEGVTTALPPGAVTPASSDHFAVFTPYFRKWSEQHLRHPLGAP--RTVRV 173 Query: 185 TGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244 + +P D + GE L + + Y +Q D A TS+ Sbjct: 174 PDGIGSEKVPARGDV-RGVSAGLAAGGESEGRDRLTAWLRRDAGAYEDQHDDLAGDATSR 232 Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304 LSP+L G LS + +R + K +GA +++ +L WR+F+ ++A P Sbjct: 233 LSPHLHFGTLSAAELVHRARR-------KEGAGATAFVRQLCWRDFHHQVLAARPD-ASH 284 Query: 305 KPFIPWTEKIEWNKD-SHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363 + + +D +AW++G TG+PI+DAAMRQL GWMHNR R++ ASFL K Sbjct: 285 ADYRAREDHWRTGRDAEQETEAWREGRTGYPIVDAAMRQLAHEGWMHNRGRLLAASFLSK 344 Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423 L VDWR G ++F+S L+DGD+A+N WQW A TG D+ P+ R+ NP Q R+DP G Sbjct: 345 TLYVDWRTGADHFLSLLVDGDIANNQMNWQWVAGTGTDTRPH-RVLNPVRQAHRYDPDGA 403 Query: 424 FIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQ 480 ++R W+PEL V + +H P + + ++YP P+V + L+++ A+ + Sbjct: 404 YVRRWVPELAGVEGKAVHEPWTLEGFDRAGIDYPEPVVGLSEG----LDRFRRARGR 456 >gi|206891163|ref|YP_002248985.1| deoxyribodipyrimidine photo-lyase [Thermodesulfovibrio yellowstonii DSM 11347] gi|206743101|gb|ACI22158.1| deoxyribodipyrimidine photo-lyase [Thermodesulfovibrio yellowstonii DSM 11347] Length = 437 Score = 333 bits (853), Expect = 5e-89, Method: Composition-based stats. Identities = 149/456 (32%), Positives = 217/456 (47%), Gaps = 35/456 (7%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 + W + DLRI DN+AL+ AC NS +VI VFI P + R++ F+ SL + K Sbjct: 6 IFWFKRDLRIDDNRALFEACQNS-FEVIPVFIFIPSILERFKSYDRRTGFLIESLKHLSK 64 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR-LQH 129 + +KG D+ + + + +F NR + + ++ ++K L Sbjct: 65 EIEKKGGRLYCFH----DEPQRVFLTLIRKYGIQAIFTNRAFSWSGEEVEETVKKLCLNE 120 Query: 130 RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189 V +F+D+ L I K+Y+ F + QNL ++ S P T + Sbjct: 121 GVDFVTFNDNFLAEIDKIPYR-----KIYSKFYRYWEQNLRLTEVSS---PERINTPKLN 172 Query: 190 PSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYL 249 I + ++ + L++F Y E RD I GTS+LSPY+ Sbjct: 173 EPEIDIVASEISHEKNIVWKP--DFGIRRLKEF---DFNRYEELRDRLDIDGTSKLSPYI 227 Query: 250 SIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIP 309 G++S R+ + E ++ EL WREF+ H+ +P F Sbjct: 228 RFGLISLRKIYRVASEAAGQD--------CQFIKELAWREFWYHIKLNFPQF-KNLEFQE 278 Query: 310 WTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDW 369 KI W D L +A+ + TG+P+IDAA+ QL WMHNR RMI ASFL KDL++DW Sbjct: 279 KRRKIRWQNDEKLYKAFIEAKTGYPLIDAAIIQLKQENWMHNRARMIVASFLTKDLMIDW 338 Query: 370 RIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWL 429 R GE +FM L+D D N G WQW AS G D P RIFNP IQ K+FDP FI+ +L Sbjct: 339 RWGESFFMEHLIDYDEVVNVGNWQWNASVGPDPKP-LRIFNPIIQAKKFDPDCKFIKKYL 397 Query: 430 PELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKK 465 P L +P+ +H P + L Y PIV+H + Sbjct: 398 PSLKKLPSFMLHDPLTH------RLPYHKPIVNHFE 427 >gi|256374682|ref|YP_003098342.1| deoxyribodipyrimidine photo-lyase [Actinosynnema mirum DSM 43827] gi|255918985|gb|ACU34496.1| Deoxyribodipyrimidine photo-lyase [Actinosynnema mirum DSM 43827] Length = 421 Score = 332 bits (852), Expect = 7e-89, Method: Composition-based stats. Identities = 143/471 (30%), Positives = 222/471 (47%), Gaps = 52/471 (11%) Query: 8 SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67 S +VW R DLR+ D+ AL + + +A+F+ P+ R ++ F++ L Sbjct: 3 SSTVVWFRRDLRVEDHPALLE-AADRADRALALFVLDPKLLR--PSGKPRTDFLHRCLKS 59 Query: 68 VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127 + L + +V + D +E + + + + + RRD+ + Sbjct: 60 LDDRLGGRLMVVE-------GDPVEVVPAVAREIGAETVHVSADTGPYGRRRDEAV---- 108 Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187 V + PG + Y+V+TPF +A + + + Sbjct: 109 GEEVELVEAGSPYAVKPGRVRKADGTPYRVFTPFYRAWADHGWRRPADT----DASTVDW 164 Query: 188 VTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSP 247 + P R + ++ +F E++ Y RDIP + GTS+ S Sbjct: 165 IKPPRSTRPRAKALPDVAELW-----------ERFRDERLPDYHRTRDIPGVDGTSRFSA 213 Query: 248 YLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPF 307 +L GV+ PR + L + G+ + +EL WREFY ++ +P+ Sbjct: 214 FLRWGVVHPRTLLDDLGQ---------DEGSKVFRSELAWREFYADVLWHHPASARHN-L 263 Query: 308 IPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLV 367 ++IE ++D AW+QG TG+PI+DA MRQL GWMHNR+RMITASFLVKDL + Sbjct: 264 DRRFDRIELDEDRDHFDAWRQGRTGYPIVDAGMRQLLEEGWMHNRVRMITASFLVKDLHL 323 Query: 368 DWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRH 427 W G +FM L+DGDLASN WQWAA +G D+ PYFR+FNP QG++FDP+G +IR Sbjct: 324 PWWWGARHFMEHLVDGDLASNQHNWQWAAGSGTDAAPYFRVFNPITQGQKFDPKGDYIRR 383 Query: 428 WLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478 ++PEL +V + +H P PIVDH L+++ A K Sbjct: 384 YVPELRDVAGKAVHQPR-------------DPIVDHAHERQVALDRFAAIK 421 >gi|29827753|ref|NP_822387.1| deoxyribodipyrimidine photolyase [Streptomyces avermitilis MA-4680] gi|29604854|dbj|BAC68922.1| putative deoxyribodipyrimidine photolyase [Streptomyces avermitilis MA-4680] Length = 457 Score = 332 bits (851), Expect = 8e-89, Method: Composition-based stats. Identities = 127/476 (26%), Positives = 219/476 (46%), Gaps = 22/476 (4%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M+V +V +DLR+ D+ L AA + +V+ +F+ + + F+ L Sbjct: 1 MNVSVVLFTSDLRLHDHPPLRAAL-DGARQVVPLFVRDRAVDGAGFAAPNRLAFLADCLR 59 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 + L ++G D ++ + + ++ RR++ L Sbjct: 60 DLDAGLRERGGRLVLRSG----DVVDQVCKVAAEADADEVHLAAGVSAYAHRREQRLRSA 115 Query: 127 LQHRVICKSFDDSVL--LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL 184 L+ ++V+ + PG++ + + V+TP+ + + ++ L + +R+ Sbjct: 116 LEADGRRLHVHETVITAVAPGAVTPSSSDHFAVFTPYFRHWEREHLRDALGAP--RGVRV 173 Query: 185 TGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244 V +P + + GE+ L + + + Y ++ D A TS Sbjct: 174 PESVGSERLPTRTELS-GLSQGLAAGGEEEGRKRLMAWLRGGITAYEDRHDDLAGDATSH 232 Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304 LSP+L G LSP + +R + GA +++ +L WR+F+ ++A P Sbjct: 233 LSPHLHFGTLSPVELVHRARRT-------GGPGAEAFVRQLAWRDFHYQVLAARPDAATA 285 Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364 ++AW+ G TG+P+IDAAMRQL GWMHNR R++TASFL K Sbjct: 286 DYRGRGDRWRSEAAAREEVEAWRTGRTGYPVIDAAMRQLRHEGWMHNRGRLLTASFLTKT 345 Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424 L VDWR+G +F+ L+DGD+A+N WQW A TG D+ P R+ NP Q KR+DP G + Sbjct: 346 LYVDWRVGARHFLELLVDGDVANNQLNWQWMAGTGTDTRP-NRVLNPVTQAKRYDPDGAY 404 Query: 425 IRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQ 480 +R W+PEL + +H P + + +YP PIV+ L ++ A+ + Sbjct: 405 VRRWVPELEGLRGAAVHEPWKLKGLDRAAYDYPDPIVELADG----LARFRHARGR 456 >gi|297834434|ref|XP_002885099.1| 6-4 photolyase [Arabidopsis lyrata subsp. lyrata] gi|297330939|gb|EFH61358.1| 6-4 photolyase [Arabidopsis lyrata subsp. lyrata] Length = 546 Score = 332 bits (851), Expect = 8e-89, Method: Composition-based stats. Identities = 134/523 (25%), Positives = 210/523 (40%), Gaps = 55/523 (10%) Query: 1 MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHG-------- 52 M + L+W R LR+ DN AL A S+ + VF+ P Sbjct: 1 MATRSG---SLIWFRKGLRVHDNPALEFASKGSE-FMFPVFVIDPHYMESDPSAFSPGSS 56 Query: 53 -ISARQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQ 111 + F+ SL + SL + G + E L + +V +L + Sbjct: 57 RAGVNRIRFLLESLKDLDSSLKKLGSRLLVLKGEPG----EVLFRCLQEWKVKRLCFEYD 112 Query: 112 YEINEVRRDKLLEKRLQH-RVICKSFDDSVLLPPGSIL-NHALQMYKVYTPF-----RKA 164 + D ++ V S L P ++ + + Y F + Sbjct: 113 TDPYYKALDVKVKDYASSTGVEVFSPVSHTLFNPADVIEKNGGKPPLSYQSFLKIAGEPS 172 Query: 165 LIQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPM-----FPIGEQNALHIL 219 ++ + SLP + G + S +P + ++ D F GE AL L Sbjct: 173 CAKSELVMSYSSLP--PVGDVGNLGISEVPSLEELGYRDDDEQADWTPFRGGESEALKRL 230 Query: 220 RKFCKEKVY--YYVEQRDIPAI---QGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKP 274 K +K + + + + P+ T+ +SPYL G LS R + L+ + D+ K Sbjct: 231 TKSISDKAWVANFEKPKGDPSAFLKPATTVMSPYLKFGCLSSRYFYQCLQNIYKDVK-KH 289 Query: 275 KSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFP 334 S S L +L+WREF+ P+ K ++I WN+D +L AW+ G TG+P Sbjct: 290 TSPPVSLLGQLLWREFFYTTAFGTPNFDKMKGNR-ICKQIPWNEDHAMLAAWRDGKTGYP 348 Query: 335 IIDAAMRQLNTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQ 393 IDA M QL GWMH+ R A FL + DL + W G + F L+D D A NNG W Sbjct: 349 WIDAIMVQLLKWGWMHHLARHCVACFLTRGDLFIHWEQGRDVFERLLIDSDWAINNGNWM 408 Query: 394 WAASTGNDSVPYFRIF-------NPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSW 446 W + + F + ++DP G +IRH+LP L ++P QYI+ P + Sbjct: 409 WLSCSSFFYQAIKATFVMLTLVSQCIVMVSKYDPDGKYIRHFLPVLKDMPKQYIYEPWTA 468 Query: 447 L------DKNDLSLNYPLPIVDHKKA---CHHTLNQYYAAKKQ 480 + +YP P+V H A C + + YA K+ Sbjct: 469 PLSVQTKANCIVGKDYPKPMVLHDSASKECKRKMGEAYALNKK 511 >gi|328887006|emb|CCA60245.1| Deoxyribodipyrimidine photolyase [Streptomyces venezuelae ATCC 10712] Length = 457 Score = 332 bits (851), Expect = 9e-89, Method: Composition-based stats. Identities = 139/481 (28%), Positives = 224/481 (46%), Gaps = 32/481 (6%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M+V +V +DLR+ D+ L AA + +V+ +F+ P R + + F+ L Sbjct: 1 MNVSVVLFTSDLRVHDHPPLRAALGRGN-EVVPLFVRDPAVARAGHAAPNRDAFLADCLA 59 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 + +L ++G D + + + + ++ RR+ L + Sbjct: 60 ALDSALRERGGRLVVRSG----DPVAEVCAVVREADADEVHMAAGCSGFARRREDRLRRA 115 Query: 127 LQHRVICKSFDDSVL--LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL 184 L+ D+V+ LP G++ Y V+TP+ + + ++ L + V Sbjct: 116 LEADGRRLYVHDAVVTALPTGAVTPGGSDHYAVFTPYFRRWSRERLREPLAAPRV----- 170 Query: 185 TGPVTPSNIPRFFDYPFQA-----IDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAI 239 V R D P +A + GEQ L + E V Y E+ D A Sbjct: 171 ---VRTPRGIRSEDLPARANVQSVSGGLAAGGEQEGRKRLAAWLAEDVDTYEERHDDLAG 227 Query: 240 QGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYP 299 TS+LSPYL G +S + +R + + +GA +++ +L WR+F+ ++A P Sbjct: 228 DATSRLSPYLHFGAVSAAEAVHRAR-------SRGGAGAEAFVRQLCWRDFHHQVLAARP 280 Query: 300 SVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITAS 359 + L+AW++G TG+P++DAAMRQL GWMHNR R++TAS Sbjct: 281 DAASDDYRTRHDRWRRGTEAEADLRAWREGRTGYPVVDAAMRQLAHEGWMHNRGRLLTAS 340 Query: 360 FLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFD 419 FL K L +DWR G +F+ L+DGDLA+N WQW A TG DS P R+ NP Q KR+D Sbjct: 341 FLTKTLYIDWREGARHFLELLVDGDLANNQLNWQWMAGTGTDSRP-NRVLNPVTQAKRYD 399 Query: 420 PQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479 P+G ++R W+PEL + +H P + +YP P+V+ L ++ A+ Sbjct: 400 PEGAYVRRWVPELAGLEGPAVHEPWKLPGRERARYDYPDPMVELADG----LARFRRARG 455 Query: 480 Q 480 Q Sbjct: 456 Q 456 >gi|257388282|ref|YP_003178055.1| cryptochrome, DASH family [Halomicrobium mukohataei DSM 12286] gi|257170589|gb|ACV48348.1| cryptochrome, DASH family [Halomicrobium mukohataei DSM 12286] Length = 483 Score = 331 bits (850), Expect = 1e-88, Method: Composition-based stats. Identities = 119/490 (24%), Positives = 204/490 (41%), Gaps = 36/490 (7%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQ-----WRQHGISARQSHFI 61 MS LVW R DLR DN L A +D V+ ++ + + ++ F+ Sbjct: 1 MSTVLVWFRRDLRCHDNATLRRAVAEADT-VVPLYCLPDRLTGEGMFGLDRVGPHRAQFL 59 Query: 62 YASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDK 121 SL +++SL + E + + +++ E Sbjct: 60 IESLADLRESLRDRDGELYVRSGDPGTVVPEAAEEF----DADAVYWQALPGPEERDEAG 115 Query: 122 LLEKRLQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPV- 179 + L I ++F L + ++ +TP++ + P Sbjct: 116 SVRAGLADAGIDSETFWTHTLYHRDDLPRPPDEIEDTFTPWKDRTEAKATVRPPKPAPEW 175 Query: 180 ---PAIRLTGPVTPSNIPRFFDYPFQAIDPM--------FPIGEQNALHILRKFCKEKV- 227 P ++P D+ F + + GE L + + E+ Sbjct: 176 VHAPNGGRRASSGADDLPTLADFGFGEDEATVDDRGVLDWTGGETAGLDRVATYVWERDC 235 Query: 228 -YYYVEQRD-IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNEL 285 Y E R+ + +S+ SP+LS G LSPRQ +++ D + + + EL Sbjct: 236 LREYRETRNGLVGADYSSKFSPWLSFGCLSPRQIHREVEQYETDRV--ENDSTYWLVFEL 293 Query: 286 IWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNT 345 WR+F+++ +A Y + I + I W +D + W +G TG P +DA MR+LN Sbjct: 294 TWRDFFQYQLAKYGAKWFQPGGIRDRDDIRWRRDRAQFERWARGETGIPFVDANMRELNA 353 Query: 346 IGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPY 405 G++ NR R ASFL +L +DWR+G YF S+L+D D+ASN W + + GNDS Sbjct: 354 TGYVSNRGRQNVASFLSNNLRIDWRLGAAYFESRLVDYDVASNWCNWAYQSQVGNDSR-- 411 Query: 406 FRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKN------DLSLNYPLP 459 F Q +DP+G ++ W PEL+ +P +Y+H P + + +L +YP P Sbjct: 412 DSYFEIVGQATHYDPEGAYVTRWCPELSALPPEYVHEPWTMSEHEQADYGVELGTDYPAP 471 Query: 460 IVDHKKACHH 469 ++D + + Sbjct: 472 MIDLEASYEK 481 >gi|88811682|ref|ZP_01126936.1| DNA photolyase, Cryptochrome 1 apoprotein (Blue light photoreceptor) [Nitrococcus mobilis Nb-231] gi|88791073|gb|EAR22186.1| DNA photolyase, Cryptochrome 1 apoprotein (Blue light photoreceptor) [Nitrococcus mobilis Nb-231] Length = 479 Score = 331 bits (850), Expect = 1e-88, Method: Composition-based stats. Identities = 135/480 (28%), Positives = 219/480 (45%), Gaps = 27/480 (5%) Query: 8 SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67 + L W R DLR+ D+ L AC + VI VFI P + + A + ++ Sbjct: 5 TPVLFWFRRDLRLADHPGLV-ACQAARVPVIPVFILDP---QTEALGAAAKWRLGLAIAS 60 Query: 68 VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127 ++ L G + + + ++ ++R Y + + RD+ ++ L Sbjct: 61 FRERLQAIGSDLILRRGPAKETL----LELLEETGACEVHWSRNYTPDAIERDQEVKTAL 116 Query: 128 QHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQN---LVQADLRSLPVPAIR 183 + S L+ P ++ A ++VY+P+ +A V ++ +LP PA+ Sbjct: 117 KRAGRHALSHPGHTLIEPWAVSPAASDHFRVYSPYWRAFRTIEIAPVVPEIEALPAPALW 176 Query: 184 L-TGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGT 242 + + + + + + +GEQ AL F E Y RD + T Sbjct: 177 PRSDNLAGWRLDAAMNRGAEVVARYACVGEQAALERFAAFLDEPWSAYRNGRDRLDLAAT 236 Query: 243 SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVC 302 S LS L+ G +SPR W+ + D + G ++L EL+WREF HL+ P + Sbjct: 237 SLLSENLTYGEISPRTIWHGVCASGGDQ----EQGGETFLKELVWREFSYHLLYHTPHIT 292 Query: 303 MGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLV 362 + + W D+ W++G TG P+IDAAMRQ+ G MHNR RM+ AS+L Sbjct: 293 -QRNWRAEWNAFPWRGDNEQAARWRKGLTGEPVIDAAMRQMYVTGTMHNRARMLVASYLT 351 Query: 363 KDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQG 422 K L+ W+IG ++F L+D D A+N GWQW A +G D+ P+FR+FNP Q ++FDP Sbjct: 352 KHLMTHWKIGMDWFAQCLIDWDPAANALGWQWVAGSGPDAAPFFRVFNPATQAEKFDPDA 411 Query: 423 TFIRHWLPELN-NVPTQYIHA-----PHSWLDKNDLSLNYPL-PIVDHKKACHHTLNQYY 475 + R ++ EL + P + A P W D YP P+++ K+ L Y Sbjct: 412 VYRRRYVAELAGDNPGEAALAYFDACPRHW--SLDPEQKYPEAPLIELKRGRERALEAYQ 469 >gi|194673414|ref|XP_585942.4| PREDICTED: cryptochrome 2-like [Bos taurus] gi|297483449|ref|XP_002693610.1| PREDICTED: cryptochrome 2-like [Bos taurus] gi|296479702|gb|DAA21817.1| cryptochrome 2-like [Bos taurus] Length = 585 Score = 331 bits (850), Expect = 1e-88, Method: Composition-based stats. Identities = 122/494 (24%), Positives = 200/494 (40%), Gaps = 36/494 (7%) Query: 10 HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69 + W R LR+ DN AL AA + V V+I P + + + + Sbjct: 21 SVHWFRKGLRLHDNPALLAAVRGAHC-VRCVYILDPWFAASSSVGINRWRMMK---NEAT 76 Query: 70 KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH 129 +SL + + Q+ + ++ ++ VT+L + E RD + K + Sbjct: 77 QSLL-RVLTLQWRKLASGGQLP-----CHMEWGVTRLTFEYDSEPFGKERDTAIMKMAKE 130 Query: 130 -RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188 V + + L I+ Q + +A+I + V + ++ G Sbjct: 131 AGVEVVTENSHTLYDLDKIIELNGQKPPLTYKRFQAIISRMELPRKPVGSVTSQQMEGCR 190 Query: 189 TPSNIPRFFDYPFQAIDPM-----------FPIGEQNALHILRKFCKEKVYYYVEQRDIP 237 Y +++ + + GE AL L K + K + +R Sbjct: 191 AEIQESHDETYGVPSLEELGFPTEGLGPAVWQGGETEALARLDKHLERKAWVANYERPRM 250 Query: 238 AIQGT----SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRH 293 + LSPYL G LS R + RL + + + + + S +L+WREF+ Sbjct: 251 NANSLLASPTGLSPYLRFGCLSCRLFYYRLWDLYKKVK-RNSTPPLSLFGQLLWREFFYT 309 Query: 294 LMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRL 353 P + P +I W+++ L W +G TGFP IDA M QL GW+H+ Sbjct: 310 AATNNPRFDRMEG-NPICIQIPWDRNPEALAKWAEGKTGFPWIDAIMTQLRQEGWIHHLA 368 Query: 354 RMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPT 412 R A FL + DL V W G F LLD D + N G W W S +F + P Sbjct: 369 RHAVACFLTRGDLWVSWESGVRVFDELLLDADFSVNAGSWMW-LSCSAFFQQFFHCYCPV 427 Query: 413 IQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLD------KNDLSLNYPLPIVDHKKA 466 G+R DP G +IR +LP+L P++YI+ P + + K + ++YP PIV+H +A Sbjct: 428 GFGRRTDPSGDYIRRYLPKLKGFPSRYIYEPWNAPESIQKAAKCVIGVDYPRPIVNHAEA 487 Query: 467 CHHTLNQYYAAKKQ 480 + + +Q Sbjct: 488 SRLNIERMKQVYQQ 501 >gi|126727582|ref|ZP_01743415.1| Deoxyribodipyrimidine photolyase [Rhodobacterales bacterium HTCC2150] gi|126703172|gb|EBA02272.1| Deoxyribodipyrimidine photolyase [Rhodobacterales bacterium HTCC2150] Length = 511 Score = 331 bits (849), Expect = 1e-88, Method: Composition-based stats. Identities = 115/486 (23%), Positives = 198/486 (40%), Gaps = 37/486 (7%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 +VW + DLR+ D+ L AA H + +I ++I PE W+Q ++ R HF + L+ + K Sbjct: 7 IVWFKRDLRVQDHAPLLAASHT-NRPIIPLYIIEPECWQQPDVARRHWHFTHDCLVDLNK 65 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVR-RDKLLEKRLQH 129 L+ G +++ + + LF + + RD + Sbjct: 66 DLTDLGQPLII----AVGVAVDVIAQLQKKFGAVDLFAHEETGNAWTYDRDVAVAGLCSD 121 Query: 130 -RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188 + + + ++ L+ V++ R + + + L + P+ Sbjct: 122 LEIPFHEYPSNGVV-------RRLKSRDVWSRIRNERMADRISPKPTKLVPFPKCASAPL 174 Query: 189 TPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIP--AIQGTSQLS 246 P + P F + G A+ L+ F + Y+ P + S+LS Sbjct: 175 PPKHDPIF---GAALTGNVQKGGRDAAVADLQSFLTYRAERYLYHISAPDASEMYCSRLS 231 Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPK----SGAFSWLNELIWREFYRHLMAFYPSV- 301 +L++G LS R+ + + L K ++ + + WR + + PS+ Sbjct: 232 AHLALGSLSVREVVQSIAKRRAQLSPMEKKTFGRNLTAFGSRVAWRCHFVQKIEDQPSIE 291 Query: 302 --CMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITAS 359 CM F E + QAW G TG+P IDA MR L + GW+ R+R + S Sbjct: 292 TCCMHPAFEGIRED---EHNDAYFQAWAAGQTGYPFIDACMRNLVSEGWITFRMRAMLVS 348 Query: 360 FLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFD 419 F L +DWRI ++ D + + Q +G + R++NP Q + D Sbjct: 349 FASYHLWLDWRITGKHLARVFTDYEPGIHYSQLQMQ--SGVTGINTMRVYNPIKQSQEHD 406 Query: 420 PQGTFIRHWLPELNNVPTQYIHAPHSWLD------KNDLSLNYPLPIVDHKKACHHTLNQ 473 P G FIR W+PEL VP ++IH P W + +L +YP PI+DH+ A + Sbjct: 407 PTGKFIRKWVPELRAVPNEFIHEPWKWKGTLLDDVEFELGRDYPEPILDHEVAARQAKKR 466 Query: 474 YYAAKK 479 +K Sbjct: 467 ISDVRK 472 >gi|114769238|ref|ZP_01446864.1| DNA photolyase, Cryptochrome 1 apoprotein (Blue light photoreceptor) [alpha proteobacterium HTCC2255] gi|114550155|gb|EAU53036.1| DNA photolyase, Cryptochrome 1 apoprotein (Blue light photoreceptor) [alpha proteobacterium HTCC2255] Length = 465 Score = 331 bits (849), Expect = 1e-88, Method: Composition-based stats. Identities = 148/478 (30%), Positives = 222/478 (46%), Gaps = 28/478 (5%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 ++W R D R +D++AL AA H+S +I +FI E + G + + ++ +K Sbjct: 8 IIWFRRDFRFSDHEALSAA-HSSGRPIIPIFIFD-EVFEALGAAP--KWRLGLAIECFKK 63 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130 L + G + ++ E L + ++++R Y+ + RD ++ L Sbjct: 64 KLERMGSNLILRRG----NACEILQELVNETGALDVYWSRAYDPVSIHRDTKVKSLLNG- 118 Query: 131 VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQA----DLRSLPVPAIRLTG 186 SF VL P + + +KVYTPF + + L + L P + Sbjct: 119 ---TSFKGHVLFEPWVPKTKSGENFKVYTPFWRHVSSQLTVNSTLSKISKLHSPHVWPKS 175 Query: 187 PVTPSN-IPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245 + + + + + +GE+ AL+ L F KV Y RD P TS L Sbjct: 176 DLLSNWGLGEEMNRGRNVVSKYINVGEEVALNKLENFIVSKVNGYKIDRDFPMRHATSGL 235 Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305 S L+ G +SPR +N L+ F K GA +L EL+WREF HL+ +P + Sbjct: 236 SENLTYGEISPRLIFNSLRNTF----DKNDLGAEHFLKELVWREFAYHLLWHFPKLDTQC 291 Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365 W + W + +AW QG TG +DA MR+L T G MHNRLRMI S+L K L Sbjct: 292 WRGEWND-FPWKGINKNAKAWMQGRTGQSFVDAGMRELYTTGTMHNRLRMIVGSYLTKHL 350 Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425 DWRIG ++F L+D D ASN GWQW A G D+ PYFRIFNP +Q ++FD G + Sbjct: 351 QTDWRIGLKWFEDCLIDWDPASNAMGWQWIAGCGADAAPYFRIFNPNLQAEKFDSDGQYR 410 Query: 426 RHWLPELNNVPTQYIHA--PHSW-LDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQ 480 + WL + + P +W L + ++ N I+D L+ Y KKQ Sbjct: 411 KKWLEADKELHAKAFFDAIPVAWKLSADKINQN---EIIDLSLGRKIALDAYAIFKKQ 465 >gi|322510730|gb|ADX06044.1| putative deoxyribodipyrimidine photo-lyase [Organic Lake phycodnavirus 1] Length = 443 Score = 331 bits (849), Expect = 1e-88, Method: Composition-based stats. Identities = 144/472 (30%), Positives = 224/472 (47%), Gaps = 38/472 (8%) Query: 10 HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQW---RQHGISARQSHFIYASLL 66 L R D R+ DN L A N VI +FI TPEQ + S F+ L Sbjct: 3 TLFIFRRDFRVQDNVGLNYAMTNFK-NVIPIFIFTPEQIDKNKNKYFSDHSVQFLCECLE 61 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 ++++ I + D + + S +T + +N+ Y +RDK +E+ Sbjct: 62 ELKEK-----IGLHI----FYGDYMNVIRSIHKDHHLTHIVFNQDYSPYSRKRDKTIEQW 112 Query: 127 LQ-HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185 Q ++ C +D +L P G+ Y VYTPF+ + QN + V I+ Sbjct: 113 CQSEQIDCIMTEDYLLQPIGTFNKKDGSPYVVYTPFKDNIFQNHSVPMPKKRGVKHIKHI 172 Query: 186 GPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245 + DY + G ++ L L+K Y R+ + T+ L Sbjct: 173 DFRSNPYYKEKMDYYVYNKHNLVKGGRKHGLKQLKK----SHATYE--RNKLNTE-TTHL 225 Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVC-MG 304 S Y+ G LS R+ ++ K++ ++L+WREF+ ++ ++P + Sbjct: 226 SSYIKYGCLSIREVYHSFKDD-------------DLKSQLVWREFFYYINYYFPELIDKS 272 Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364 K + + I+W ++ L AWK G TGFP++DA MRQLN G+MHNR R+I+A+FL + Sbjct: 273 KSYQSKYDAIKWVQNKKHLDAWKHGQTGFPVVDACMRQLNHSGYMHNRGRLISANFLNRI 332 Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYF-RIFNPTIQGKRFDPQGT 423 L ++WR GE YF L+D D NN WQW +S G D+ PY R+FNP +Q KRFD Q Sbjct: 333 LGINWRSGELYFAQTLIDYDPCVNNANWQWVSSVGIDTKPYSQRVFNPWLQSKRFDAQCD 392 Query: 424 FIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYY 475 +I+ W+PEL +V + IH K +++YP P+VD+ +L Y Sbjct: 393 YIKKWIPELKDVAPKDIHQ-WDISCK-QYNVDYPCPMVDYALCRERSLKMYK 442 >gi|319785752|ref|YP_004145227.1| DNA photolyase FAD-binding protein [Pseudoxanthomonas suwonensis 11-1] gi|317464264|gb|ADV25996.1| DNA photolyase FAD-binding protein [Pseudoxanthomonas suwonensis 11-1] Length = 476 Score = 331 bits (849), Expect = 1e-88, Method: Composition-based stats. Identities = 163/473 (34%), Positives = 223/473 (47%), Gaps = 27/473 (5%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M V LVW R+DLR+ D+ AL AA V V+I P++ A + SL Sbjct: 1 MGVALVWFRDDLRLDDHPALRAALDRGLVPV-PVYIHAPDEEGAWAPGAASDAWRRRSLA 59 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 + ++L+Q+G + L + + +NR+YE + RD ++++ Sbjct: 60 ALAEALAQRGSRLLMLHGPSLGT----LQALAALTGAEAVLWNRRYEPHIEARDTRIKRQ 115 Query: 127 LQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185 L+ + +SF+ S+L P I Y+V+TPF L Q LR L + RL Sbjct: 116 LRQAGLHAESFNGSLLFEPWEIETKQGDPYRVFTPF---WKNALAQWRLRPLWEASARLP 172 Query: 186 GP-VTPSNIPRFFDYPFQAIDPMF--------PIGEQNALHILRKFCKEKVYYYVEQRDI 236 P + R D P + GE A L+ F + Y + RD Sbjct: 173 SPDQAGAPDGRHLDAIVPETRPDWDAGFWDEATPGEAGARARLQAFLAHGLEGYAQARDR 232 Query: 237 PAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMA 296 A+ GTS+LS +L G +S + V P +L EL WREF H+M Sbjct: 233 MAVDGTSRLSAHLHFGEVS-----VQRVAAAVLAAEVPAPDRERFLAELGWREFAHHVMH 287 Query: 297 FYPSVCMGKPFIPWTEKIEW-NKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRM 355 YP V + + P W L AW++G TG PIIDA MRQL GWMHNR+RM Sbjct: 288 HYPHV-VDQDLDPRMADFRWARPLRTTLDAWERGRTGVPIIDAGMRQLWQTGWMHNRVRM 346 Query: 356 ITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQG 415 I AS++ K L + WR G +F L+D DLA+N GWQWAA TG D+ PYFR+FNP Q Sbjct: 347 IVASWVTKHLRLHWRHGARWFWDTLVDADLANNTQGWQWAAGTGADAAPYFRVFNPVSQA 406 Query: 416 KRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLD-KNDLSLNYPL-PIVDHKKA 466 +FDPQG +I WLPEL +P AP D L+ YP P VD + Sbjct: 407 MKFDPQGEYIARWLPELAALPLPARFAPWEHPDLLRRLAPRYPRQPQVDLAQG 459 >gi|170065332|ref|XP_001867895.1| cryptochrome-1 [Culex quinquefasciatus] gi|167882412|gb|EDS45795.1| cryptochrome-1 [Culex quinquefasciatus] Length = 539 Score = 331 bits (849), Expect = 2e-88, Method: Composition-based stats. Identities = 123/506 (24%), Positives = 192/506 (37%), Gaps = 58/506 (11%) Query: 5 TAMSVHLVWLRNDLRITDNKALYAACHNSDAK-----VIAVFIATPEQWRQHGISARQSH 59 ++ + W R LR+ DN AL AA + + VFI P R + + H Sbjct: 2 SSKQTAVHWFRKGLRVHDNPALAAAVDRVRGQPSKLVLRPVFILDPGIIRWLRVGPNRLH 61 Query: 60 FIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRR 119 + + +E + VT L + E V+R Sbjct: 62 VVR-------------------------GNPVEMFPELFREWNVTLLTFEHDIEPYSVKR 96 Query: 120 DKLLEKRL-QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLV-------- 170 D + + Q +V + + P IL + +L Sbjct: 97 DATVRELARQAKVEVQVEKSLTIYDPDEILKKNGGKIPLTYQKYGSLASMCKTPGPIGVP 156 Query: 171 -QADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDP---MFPIGEQNALHILRKFCKEK 226 + S+P R + P + + D FP GE AL L+ + K Sbjct: 157 DKVPAESVPEKDKRERKDGKCYDPPTLDELKVRQEDLGECKFPGGETEALRRLQDYMSRK 216 Query: 227 VY--YYVEQRDIPA--IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWL 282 + + + P T+ LSPY+ G LS R LK+ K S + Sbjct: 217 SWVCAFEKPNTSPNSLEPSTTVLSPYVKFGCLSARLFMAELKKVL--AGQKHSQPPVSLV 274 Query: 283 NELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQ 342 +L+WREFY A P+ ++ W + L AW G TG+P IDA MRQ Sbjct: 275 GQLMWREFYYCAAAAEPNFDKM-VGNSVCLQVPWETNPEHLAAWTHGRTGYPFIDAIMRQ 333 Query: 343 LNTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGND 401 L GW+H+ R A FL + DL + W G+ F LLD D A N G W W S Sbjct: 334 LRQEGWIHHLARHAVACFLTRGDLWISWEEGQRVFEELLLDADWALNAGNWMW-LSASAF 392 Query: 402 SVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDK------NDLSLN 455 +FR+++P GK+ DP+G +I+ ++PEL P I+ P + + + Sbjct: 393 FHQFFRVYSPVAFGKKTDPEGKYIKKYVPELAKFPAGIIYEPWKANLETQKKLGCIIGKD 452 Query: 456 YPLPIVDHKKACHHTLNQYYAAKKQS 481 YP IV H++ +++ A +++ Sbjct: 453 YPHRIVIHEEISKKNISRMSEAYRKN 478 >gi|68534519|gb|AAH98514.1| Cryptochrome DASH [Danio rerio] Length = 520 Score = 331 bits (849), Expect = 2e-88, Method: Composition-based stats. Identities = 133/480 (27%), Positives = 220/480 (45%), Gaps = 31/480 (6%) Query: 5 TAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQ------HGISARQS 58 +A + LRNDLR+ DN+ + A N++ +I ++ P ++ + Sbjct: 2 SASRTVICLLRNDLRLHDNEVFHWAQRNAE-HIIPLYSFDPRHYQGTYHYNFPKTGPFRL 60 Query: 59 HFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVR 118 F+ S+ ++ L + G Q D E + V+ + ++ + E Sbjct: 61 RFLLDSVKDLRALLKKHGSTLLVRQGKPEDVVFELIKQLG---SVSTVAFHEEVASEEKS 117 Query: 119 RDKLLEK-RLQHRVICKSFDDSVLLPPGSILN-HALQMYKVYTPFRKALIQNLVQADLRS 176 ++ L++ Q++V ++F S L + H + VYT FRKA+ + S Sbjct: 118 VEEKLKEICCQNKVRVQTFWGSTLYHRDDLPFSHIGGLPDVYTQFRKAVEAQGRVRPVLS 177 Query: 177 LPVPAIRLTGPVTPSNIPRFFDY----PFQAIDPMFP--IGEQNALHILRKFCKEKVY-- 228 P + IP F P FP GE AL L+ + + Sbjct: 178 TPEQVKSPPSGLEEGPIPTFDSLGQTEPLDDCRSAFPCRGGETEALARLKHYFWDTNAVA 237 Query: 229 YYVEQRD-IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIW 287 Y E R+ + + +++ SP+L++G +SPR + ++K+ V+ + + EL+W Sbjct: 238 TYKETRNGMIGVDFSTKFSPWLALGCISPRYIYEQIKKYEVERT--ANQSTYWVIFELLW 295 Query: 288 REFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIG 347 R++++ + Y + + + + WN D + AWK+G TG P +DA MR+L G Sbjct: 296 RDYFKFVALKYGNRIFYMNGL-QDKHVPWNTDMKMFDAWKEGRTGVPFVDANMRELALTG 354 Query: 348 WMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFR 407 +M NR R ASFL KDL +DWR+G E+F L+D D+ SN G W ++A GND R Sbjct: 355 FMSNRGRQNVASFLTKDLGLDWRLGAEWFEYLLVDHDVCSNYGNWLYSAGIGNDPREN-R 413 Query: 408 IFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPH----SWLDKNDLSLN--YPLPIV 461 FN QG +D G ++R W+PEL + +H P S L +SLN YP PI+ Sbjct: 414 KFNMIKQGLDYDNNGDYVRQWVPELRGIKGGDVHTPWTLSNSALSHAQVSLNQTYPCPII 473 >gi|87199776|ref|YP_497033.1| deoxyribodipyrimidine photo-lyase type I [Novosphingobium aromaticivorans DSM 12444] gi|87135457|gb|ABD26199.1| deoxyribodipyrimidine photo-lyase type I [Novosphingobium aromaticivorans DSM 12444] Length = 454 Score = 331 bits (848), Expect = 2e-88, Method: Composition-based stats. Identities = 146/481 (30%), Positives = 221/481 (45%), Gaps = 38/481 (7%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 +VW R D + ++ VI V+I + R + +++ SL ++ Sbjct: 4 PVIVWFRRD--LRLADQAALLAAAAEGPVIPVYILDDDTPRHCRMGGASRWWLHHSLAEL 61 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128 SL + G + E L + + + + YE +K + K Sbjct: 62 DASLRKLGSRLILRRGK----CHEELAAVRREAGARVVHALQHYEPWWRNAEKAVAKT-- 115 Query: 129 HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188 + + + L P GS+ + YK+YTPF AL++ + A P RL P Sbjct: 116 --IRLVLHEGNYLAPAGSVRTGMGRPYKIYTPFWHALLERMPPAPPLPAPE---RLEAPA 170 Query: 189 TPSNIPRFFDYPFQAIDPMFPIG--------EQNALHILRKFCKEKVYYYVEQRDIPAIQ 240 D+ P + G E A L+ F ++V Y E R++P+I+ Sbjct: 171 VWPTSDALDDWKLLPTAPDWAGGFRETWTPGENGAEERLQDF-ADRVARYGETRNLPSIE 229 Query: 241 GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPS 300 GTS+LSP+L G +SP W+R+ + +L EL WR++ ++++ +P Sbjct: 230 GTSRLSPHLHFGEISPATIWHRV--------VNAGGSVDVFLGELGWRDYAQNVIVQFPD 281 Query: 301 VCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASF 360 +++EW D L+AW+QG TG+PI+DA MR+L GWMHNR+RMI ASF Sbjct: 282 YGSRNA-REAYDRLEWRDDPEALRAWQQGRTGYPIVDAGMRELWHTGWMHNRVRMIAASF 340 Query: 361 LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDP 420 LVK LL+DWR GE +F L+D D ASN WQW A TG DS + RI P Q +FD Sbjct: 341 LVKHLLIDWREGERWFWDTLVDADYASNAVNWQWTAGTGVDSNMFVRIMAPLTQSPKFDA 400 Query: 421 QGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQ 480 G +IR W+PEL ++ + IH P YP IV H +A L + K+ Sbjct: 401 AG-YIRQWVPELAHLSDRDIHDP------AVPPRGYPAKIVSHSEARARALAAHDRMKQP 453 Query: 481 S 481 + Sbjct: 454 A 454 >gi|302864753|ref|YP_003833390.1| deoxyribodipyrimidine photo-lyase [Micromonospora aurantiaca ATCC 27029] gi|302567612|gb|ADL43814.1| Deoxyribodipyrimidine photo-lyase [Micromonospora aurantiaca ATCC 27029] Length = 440 Score = 331 bits (848), Expect = 2e-88, Method: Composition-based stats. Identities = 140/453 (30%), Positives = 220/453 (48%), Gaps = 29/453 (6%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 +V DLR+ D+ AL AAC D +V+ +++ P +S ++ F++ SL + Sbjct: 5 TAVVLFTRDLRVHDHPALAAACSAFD-RVVPLYVLDPAL---QKLSPNRTRFLHQSLADL 60 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL- 127 +++L ++G + ++++ + + + RR++ L Sbjct: 61 REALRKRGGDLVIRRGDPVAETVK----LARKVGAEGVGLSADVSRYAHRRERRLRAECD 116 Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187 +HR+ + F ++ PG++ Y+V++P+ +A + +L + +RL Sbjct: 117 RHRMFLRLFPGLTIVEPGALRPGGGDHYRVFSPYFRAWQGVRWRDELAAP--KRVRLPDG 174 Query: 188 VTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSP 247 V P R D P GE A L + + Y + D A TS+LSP Sbjct: 175 VDPG---RLPDPPKGDSPDAAVGGETVARRRLTAWLPT-LDRYDDIHDDMAGDETSRLSP 230 Query: 248 YLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPF 307 YL G +SP NR + ++ +L WR+FY ++A +P + Sbjct: 231 YLRFGCVSPLAVANRAGDR-----------DGPFVRQLCWRDFYHQVVAGFPDLSTVAYR 279 Query: 308 IPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLV 367 E +W D H AW +G TG PI+DA MRQL GWMHNR R+ITA +L K L + Sbjct: 280 RGARE--DWRDDPHAFDAWAEGRTGMPIVDAGMRQLRAEGWMHNRARLITAGYLTKHLGL 337 Query: 368 DWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRH 427 DWR G E F LLDGD +N+G WQW A TGND+ PY R FNP Q +R+DP G ++R Sbjct: 338 DWRPGLEIFFRWLLDGDRVNNSGNWQWVAGTGNDTRPY-RGFNPVRQAERYDPDGAYVRR 396 Query: 428 WLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPI 460 W+PEL +V + +H P D+ +L+YP P+ Sbjct: 397 WVPELASVAGKAVHQPWRLPDEVRHTLDYPPPL 429 >gi|187931260|ref|YP_001891244.1| deoxyribodipyrimidine photolyase [Francisella tularensis subsp. mediasiatica FSC147] gi|187712169|gb|ACD30466.1| deoxyribodipyrimidine photolyase [Francisella tularensis subsp. mediasiatica FSC147] Length = 499 Score = 331 bits (848), Expect = 2e-88, Method: Composition-based stats. Identities = 124/483 (25%), Positives = 212/483 (43%), Gaps = 31/483 (6%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 + +VW + DLR+TDN AL A D ++ ++I PE W+Q +S RQ F+ L ++ Sbjct: 1 MQIVWFKRDLRVTDNLALSLASEKGD--ILQLYIIEPELWQQPDMSHRQYLFLSECLEEL 58 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEV-RRDKLLEKRL 127 L++ G D++E + + + ++ +++ + +RD LEK Sbjct: 59 NTELTKLGQSLAIM----LGDAVEIFEQLIQKYNIKNVWSHQETWNDWTYQRDIKLEKFF 114 Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187 + I ++ + + + + +++A + + ++ P Sbjct: 115 KQNNIVWHQPYQ-----NGVVRCLADRDNWALLWHQRMSEKIIRAPTKLKFICENQIKIP 169 Query: 188 VTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIP--AIQGTSQL 245 S + D + G AL IL F ++ Y ++ P A + S+L Sbjct: 170 TAESLGLEYDDCYKR-----QKGGRIRALRILDSFLYQRGCGYTKEMSSPVTAFKSCSRL 224 Query: 246 SPYLSIGVLSPRQCWNR-------LKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFY 298 SPY++ G +S ++ + + +KE V K S S+L+ L W + + Sbjct: 225 SPYIAFGAISLKEIYQKANQRKNEIKESSVKNKTKWLSAMRSFLSRLRWHCHFMQKLEDQ 284 Query: 299 PSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITA 358 PS+ + + + +AWK TG+P+IDA MR L GW++ R+R + Sbjct: 285 PSIEYENLHSAYDQLRTEPLNQQCFEAWKTDNTGYPMIDACMRALIATGWLNFRMRAMLM 344 Query: 359 SFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRF 418 SF L +DWR+ Y D + + Q +G + RI+NP Q Sbjct: 345 SFASYHLWLDWRVTSLYLARLFTDYEPGIHYSQVQMQ--SGTTGINSIRIYNPIKQSIDQ 402 Query: 419 DPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478 DP G FIR WLPEL NV + IH P WL+K++ SL+YP P +D K+A + Y + Sbjct: 403 DPNGEFIRRWLPELENVSNENIHTP--WLEKHN-SLDYPDPTIDEKQARKFAADNIYKIR 459 Query: 479 KQS 481 K S Sbjct: 460 KSS 462 >gi|307329598|ref|ZP_07608757.1| Deoxyribodipyrimidine photo-lyase [Streptomyces violaceusniger Tu 4113] gi|306884792|gb|EFN15819.1| Deoxyribodipyrimidine photo-lyase [Streptomyces violaceusniger Tu 4113] Length = 454 Score = 331 bits (848), Expect = 2e-88, Method: Composition-based stats. Identities = 134/474 (28%), Positives = 222/474 (46%), Gaps = 23/474 (4%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 MS L +DLR++DN L A +++ +V+ +F+ + F+ +L Sbjct: 1 MSTSLSVFTSDLRLSDNPVLRGATRSAE-RVVPLFVVDRGLAGTGFAVPNRVAFLADALA 59 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 + L ++G + D++ + Q ++ RR++ L + Sbjct: 60 DLDAGLRERGGRLVVRRG----DAVAEILRAARQADAEEVHIAGGVSGYATRREQRLREA 115 Query: 127 LQHRVICKSFDDSVL--LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL 184 L+ +V+ + PG + + V+TP+ +A + ++ L + ++ Sbjct: 116 LEADGRRLRVHGAVVTAVEPGEVAPAGKDHFAVFTPYFRAWQRAGLREALTAPRTVSVPS 175 Query: 185 TGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244 P P + GE +R + + + Y +++D A TS+ Sbjct: 176 GLRSEPVAAVTSLA-PGSPSPGLPEGGETAGRRRVRSWWRSGLADYADRQDDLAGDATSR 234 Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304 LSPYL G LSP + +R ++ +GA +++ +L WR+F+ ++A P Sbjct: 235 LSPYLHFGCLSPVELVHRARKA-------GGAGADAFVRQLAWRDFHHQVLAARPDAA-H 286 Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364 + P ++ W D + AWK G TG+P++DA MRQL GWMHNR R++ A FL K Sbjct: 287 ADYRPRGDR--WRHDEAEIAAWKAGRTGYPLVDAGMRQLRHEGWMHNRARLLVAGFLTKT 344 Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424 L DWRIG +F+ L+DGDLA+N WQWAA TG D+ P R+ NP Q +RFDP G + Sbjct: 345 LYQDWRIGARHFLDLLVDGDLANNQLNWQWAAGTGTDTRP-NRVLNPLTQARRFDPDGAY 403 Query: 425 IRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478 +R W+PEL V +H P L+YP PIVD ++ L ++ A+ Sbjct: 404 VRRWVPELAEVTGSGVHTPWRLPKAERDRLDYPGPIVDLQEG----LARFRDAR 453 >gi|18858471|ref|NP_571862.1| cryptochrome 4 [Danio rerio] gi|8698594|dbj|BAA96851.1| cryptochrome 4 [Danio rerio] Length = 558 Score = 330 bits (847), Expect = 2e-88, Method: Composition-based stats. Identities = 131/494 (26%), Positives = 211/494 (42%), Gaps = 30/494 (6%) Query: 5 TAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWR-QHGISARQSHFIYA 63 + ++HL R LR+ DN +L A +S A + V++ + + A + F+ Sbjct: 2 SHRTIHL--FRKGLRLHDNPSLLGALASSSA-LYPVYVLDRVFLQGAMHMGALRWRFLLQ 58 Query: 64 SLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLL 123 SL + L G S L Q +T++ Y+ + E R DK + Sbjct: 59 SLEDLDTRLQAIGSRLFVLCGST----ANILRELVAQWGITQISYDTEVEPYYTRMDKDI 114 Query: 124 EKRLQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAI 182 + Q + + L I+ + ++ L + + + V Sbjct: 115 QTVAQENGLQTYTCVSHTLYDVKRIVKANGGSPPLTYKKFLHVLSVLGEPEKPARDVSIE 174 Query: 183 RLTGPVTPSNIPRFFDYPFQA-------IDPMFPIGEQNALHILRKFCKEKVY--YYVEQ 233 VTP ++ R + P A + ++P GE +AL L K + + + + + Sbjct: 175 DFQRCVTPVDVDRVYAVPSLAHLGLQVEAEVLWPGGESHALQRLEKHFQSQGWVANFSKP 234 Query: 234 RDIPA--IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFY 291 R IP + T+ LSPYLS+G LS R ++RL + S +++WREF+ Sbjct: 235 RTIPNSLLPSTTGLSPYLSLGCLSVRTFYHRLNCIYAQSK-NHSLPPVSLQGQVLWREFF 293 Query: 292 RHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHN 351 + + P+ + +I+W D L+ W+ TGFP IDA M QL GW+H+ Sbjct: 294 YTVASATPNFTKMEG-NSICLQIDWYHDPERLEKWRTAQTGFPWIDAIMTQLLQEGWIHH 352 Query: 352 RLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFN 410 R A FL + DL + W G + F LLD D + N G W W +++ Y RIF Sbjct: 353 LARHAVACFLTRGDLWISWEEGMKVFEEFLLDADYSVNAGNWMWLSASAFFHK-YTRIFC 411 Query: 411 PTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDK------NDLSLNYPLPIVDHK 464 P G+R DPQG ++R +LP L N P+QYI+ P + + +YP PIV H Sbjct: 412 PVRFGRRTDPQGEYLRKYLPVLKNFPSQYIYEPWKAPEDVQLSAGCIIGKDYPRPIVSHI 471 Query: 465 KACHHTLNQYYAAK 478 +A L + Sbjct: 472 EASQRNLELMRQVR 485 >gi|294507095|ref|YP_003571153.1| deoxyribodipyrimidine photolyase [Salinibacter ruber M8] gi|294343423|emb|CBH24201.1| Deoxyribodipyrimidine photolyase [Salinibacter ruber M8] Length = 494 Score = 330 bits (846), Expect = 4e-88, Method: Composition-based stats. Identities = 136/472 (28%), Positives = 200/472 (42%), Gaps = 25/472 (5%) Query: 10 HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69 L R DLR+ DN L AC SD +V+ FI P Q + F + + Sbjct: 36 SLFLFRRDLRLADNTGLARACRASD-EVVPAFIFDPRQCDP----DNNAFFSEHAFAFLV 90 Query: 70 KSLSQKGIVFQYHQCSNF---DDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 +SL + + F D L ++ + NR Y RRD L Sbjct: 91 RSLKELRRRLRERGGRLFVFEGDPAAILSELISAGDISAVHVNRDYTPFARRRDDQLRSV 150 Query: 127 LQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185 + +S + +L P + Y +TPFR+ + P Sbjct: 151 CREEGARFQSSNALLLTEPEEVQPSGGGAYHTFTPFRRRAQSVSTPPPRGKVEGPFCDRA 210 Query: 186 GPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245 V + + + YP + G + L + E + Y + R PA + + L Sbjct: 211 LSVETTPLETYDRYPTDDLRA--KGGRAEGIEFLEEI--ETLGAYRDARHQPAKESLTAL 266 Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305 S + G +S R+ +K+ F D +++ WR+FY HL+ P Sbjct: 267 SAHHKFGTISIRESLYVVKKAFED--------YHKLISQFYWRDFYTHLLFHRPEQLTT- 317 Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365 P I W + W +G TG P +DA MR+L G+MHNR+RM+ ASFL KDL Sbjct: 318 SLRPIGRHIPWRNERGEFDRWHEGATGVPFVDAGMRELRETGYMHNRVRMVVASFLTKDL 377 Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425 LVDWR G ++F L D D A N G WQWAAS G D RI+NP Q ++ DP+ +I Sbjct: 378 LVDWRWGAQHFARTLTDYDPAVNAGNWQWAASVGTDYR--LRIYNPYSQAEKHDPEAEYI 435 Query: 426 RHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477 + W+PE+ +V + A + D +D + YP PIVD A H + + A Sbjct: 436 KRWVPEVRDVDADRL-ASGTQEDFSDAAPGYPAPIVDRNDAYHRAKDAFREA 486 >gi|283806650|ref|NP_001164572.1| chryptochrome 2-1 [Acyrthosiphon pisum] gi|283476383|emb|CAY26039.1| chryptochrome 2-1 [Acyrthosiphon pisum] Length = 512 Score = 330 bits (846), Expect = 4e-88, Method: Composition-based stats. Identities = 120/495 (24%), Positives = 194/495 (39%), Gaps = 33/495 (6%) Query: 10 HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69 + W R LRI DN +L N+ +FI P + + F+ L + Sbjct: 6 TVHWFRKGLRIHDNPSLREGLINAKTF-RCIFILDPWFAGASNVGINKWRFLLQCLSDLD 64 Query: 70 KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH 129 SL + + E L Q T + E RD+ ++ Sbjct: 65 NSLKKLNSRLFVIKG----QPAEALPKLFRQWGTTNFTFEEDPEPFGRVRDQNIKVMCSE 120 Query: 130 RVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188 I + L I+N + + +++ + + + L Sbjct: 121 LGISVITRCSHTLYQLDKIINVNGGKAPLTYHLFQNILECIDPPERAVPSIDKEFLGNAF 180 Query: 189 TPSNI--------PRFFDYPFQAIDPM----FPIGEQNALHILRKFCKEK--VYYYVEQR 234 TP+ P + F+ I+ + + GE AL L+ + K + + + + Sbjct: 181 TPTKYDHDKIFGVPTVEELGFEEINNIARHVWVGGETEALIRLQCHLERKAFIASFGKPK 240 Query: 235 DIPA--IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYR 292 P + + L+PYL G LS R ++ L E + I+ S +L+WR+F+ Sbjct: 241 MTPQSLLASPTGLAPYLKFGCLSTRLYFSELNELYKK--IRKSQPPLSLHGQLLWRDFFY 298 Query: 293 HLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNR 352 P+ P +I W+K+ L W G TG+P IDA M QL GW+H Sbjct: 299 CASTNNPNFDRM-VGNPICVQIPWDKNPRALSKWANGQTGYPWIDAIMIQLRQEGWIHCI 357 Query: 353 LRMITASFLV-KDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNP 411 R A FL DL + W G + F LLD D + N G W W S + + + P Sbjct: 358 ARHAVACFLTWGDLWLSWEEGMKVFDELLLDADWSVNAGYWMW-YSCSSFYKEFIHCYCP 416 Query: 412 TIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDK------NDLSLNYPLPIVDHKK 465 G++ DP G +IR ++P LNN+P +YIH P + + ++YPLPIV+H Sbjct: 417 VRFGRKVDPNGDYIRRYIPALNNMPNKYIHEPWLAPESIQITANCIIGIDYPLPIVNHIN 476 Query: 466 ACHHTLNQYYAAKKQ 480 A + + A +Q Sbjct: 477 ASKINIERMKLAYQQ 491 >gi|117164673|emb|CAJ88219.1| putative deoxyribodipyrimidine photolyase [Streptomyces ambofaciens ATCC 23877] Length = 457 Score = 330 bits (845), Expect = 4e-88, Method: Composition-based stats. Identities = 130/478 (27%), Positives = 225/478 (47%), Gaps = 26/478 (5%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 MSV +V DLR+ D+ L AA +D +V+ +F+ P + + F+ L Sbjct: 1 MSVAVVLFTADLRLHDHPPLRAALRAAD-EVVPLFVLDPGIHAAGFDAPNRRAFLADCLH 59 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 + SL ++ + ++ R++ L + Sbjct: 60 DLDASLRRRAGRLVVRSGPVVRVV----REVVAECGAGEVHLAAGVTAYAHHREERLREG 115 Query: 127 LQHRVICKSFDDSV--LLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL 184 L + ++V ++ PG++ + V+TP+ + + ++ + +R+ Sbjct: 116 LGGSGVALHAHETVTTVVAPGAVTPAGSDHFAVFTPYFRRWARESLREPFGAP--RTVRV 173 Query: 185 TGPVTPSNIPRFFDYPFQAIDPMFP-IGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS 243 V +P + P P P GE + + + Y ++ D A TS Sbjct: 174 PDGVRGGPLPDRAEVP--GTSPGLPDGGETAGRDRFSLWSRAGMSAYEDRHDDLAGDATS 231 Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCM 303 +LSPYL G LS + +R + + GA +++ +L WR+F+ ++A P Sbjct: 232 RLSPYLHFGALSAVELVHRARR-------RGGPGAEAFVRQLCWRDFHHQVLAARPK-AS 283 Query: 304 GKPFIPWTEKIEWNKDSHL-LQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLV 362 + + + KD+ + AW++G TG+P++DAAMRQL GWMHNR R++ ASFL Sbjct: 284 AEDYRTRHDHWRGEKDAAADISAWREGRTGYPVVDAAMRQLRHEGWMHNRARLLVASFLT 343 Query: 363 KDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQG 422 K L VDWRIG +F+ L+DGD+ +N WQW A TG D+ P+ R+ NP +QG+RFDP G Sbjct: 344 KTLYVDWRIGARHFLDLLVDGDIVNNQLNWQWVAGTGTDTRPH-RVLNPVVQGRRFDPDG 402 Query: 423 TFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQ 480 ++ W+PEL +V + +H P + +L+YP P++D L+++ A+ + Sbjct: 403 AYVHRWVPELRDVDGKRVHEPWRLPEDQRAALDYPAPLIDLADG----LDRFRHARGR 456 >gi|76802366|ref|YP_327374.1| deoxyribodipyrimidine photolyase [Natronomonas pharaonis DSM 2160] gi|97047786|sp|Q3IPX9|CRYD_NATPD RecName: Full=Cryptochrome DASH gi|76558231|emb|CAI49819.1| deoxyribodipyrimidine photolyase [Natronomonas pharaonis DSM 2160] Length = 474 Score = 330 bits (845), Expect = 4e-88, Method: Composition-based stats. Identities = 127/479 (26%), Positives = 199/479 (41%), Gaps = 30/479 (6%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPE-----QWRQHGISARQSHFI 61 M +VW R+DLR+TDN L A ++ VI V+ P+ ++ ++ F Sbjct: 1 MDTAVVWFRDDLRVTDNPTLADAVAAAET-VIPVYTFDPDRYTESEYGPPKTGGHRAVFR 59 Query: 62 YASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDK 121 ++ ++ SL +G + + ++ + E RR Sbjct: 60 RQAVADLRASLRDRGGDLLVRSG----RPATVVPELAQRAGADAVYAQTKPATEERRRAA 115 Query: 122 LLEKRLQHRVIC-KSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRS---- 176 + L I + L P + + +TP+RK D RS Sbjct: 116 DVASALDDAGIALRQRWTHTLYHPDDLPTPPTDIDDTFTPWRKETEAAATVRDPRSAPET 175 Query: 177 LPVPAIRLTGPVTPSNIPRFFDYPFQAIDPM-FPIGEQNALHILRKFCKEKVY--YYVEQ 233 +P P GPV + P + F GE + + E + Y Sbjct: 176 VPTPDGLTPGPVPTVESLGVSEPPTDDRAVLEFEGGESAGKRRVESYIWEGDHLREYKTT 235 Query: 234 RD-IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYR 292 R+ + +S+ SP+L+ G LSPR ++ + + + + EL WR+F++ Sbjct: 236 RNGLLGADYSSKFSPWLAAGCLSPRWLHREVERYEDERV--ANEDTYWLVFELAWRDFFQ 293 Query: 293 HLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNR 352 Y + KP I+W++D L + W G TG P +DA MR+LN G+M NR Sbjct: 294 FQFEKYGA-TFFKPGGIRERNIDWDRDRALFERWADGETGVPFVDANMRELNRTGYMSNR 352 Query: 353 LRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPT 412 R ASFL L +DWR G YF ++L+D D+ASN G W + A GNDS R F+ Sbjct: 353 GRQNVASFLAGVLGIDWRWGAAYFEARLIDYDVASNWGNWAYQAGVGNDSR--DRYFDVR 410 Query: 413 IQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKN------DLSLNYPLPIVDHKK 465 Q +R+D +I WLPEL +P H P + +L ++YP P+VD Sbjct: 411 SQAERYDSDAEYITTWLPELAALPATIAHQPWQLSEAEQREYGVELGVDYPEPVVDIDA 469 >gi|126461586|ref|YP_001042700.1| deoxyribodipyrimidine photo-lyase [Rhodobacter sphaeroides ATCC 17029] gi|126103250|gb|ABN75928.1| Deoxyribodipyrimidine photo-lyase type I [Rhodobacter sphaeroides ATCC 17029] Length = 471 Score = 330 bits (845), Expect = 4e-88, Method: Composition-based stats. Identities = 140/474 (29%), Positives = 214/474 (45%), Gaps = 25/474 (5%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 ++W R DLR+ DN L A +I +FI PE + A + + + Sbjct: 8 ILWFRRDLRLADNPMLAEAAATG-RPLIPLFILDPE---TEALGAAPKWRLGLGVEAFAQ 63 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130 +L G + ++ L + + + ++R +E + RD+ + L+ Sbjct: 64 ALEGLGSRLVLRRGP----ALAVLKTLVAETGAAGVHWSRLWEPDWRARDEGVTAGLRQA 119 Query: 131 VI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQ---ADLRSLPVPA-IRLT 185 I + P + Y+VYTPF KA+ V LP PA ++ Sbjct: 120 GIEAARHAGHTIFEPREVETGQGGFYRVYTPFWKAVKDRPVAASFPPPARLPSPAEWPVS 179 Query: 186 GPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245 + ++ R + + P +GE A L +F + Y +RD P TS+L Sbjct: 180 ERLASWDLGRAMNRGAAVVAPHLAVGEAAAAERLARFLSGPLDRYAAERDRPDAPVTSRL 239 Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305 S L+ G +S R W+ + ++GA +L EL WREF HL+ P + + Sbjct: 240 SENLTYGEISARSLWHAGMR----ARAEGRAGAEKFLQELAWREFGWHLLYHTPEIAR-R 294 Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365 + + W D+ + W++G TG P +DAAMR+L G MHNR R+I S+L K L Sbjct: 295 NWRGDWDAFPWRGDNPDAERWRRGMTGEPFVDAAMRELFVTGTMHNRARLIAGSYLTKHL 354 Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425 L DWR+G+ +F L+D D ASN GWQW A +G D+ PYFRIFNP Q ++FDP+ + Sbjct: 355 LTDWRVGKAWFEDCLIDWDPASNALGWQWVAGSGPDASPYFRIFNPATQAEKFDPESAYR 414 Query: 426 RHWLPELNNVPTQYIHA-----PHSWLDKNDLSLNYPLPIVDHKKACHHTLNQY 474 R +L E+ P A P SW + D YP P+V + L Y Sbjct: 415 RRFLAEIARRPGPEALAFFEAVPRSWGLRPDRC--YPRPVVGLAEGRERALAAY 466 >gi|302797733|ref|XP_002980627.1| hypothetical protein SELMODRAFT_268379 [Selaginella moellendorffii] gi|300151633|gb|EFJ18278.1| hypothetical protein SELMODRAFT_268379 [Selaginella moellendorffii] Length = 499 Score = 330 bits (845), Expect = 5e-88, Method: Composition-based stats. Identities = 125/480 (26%), Positives = 214/480 (44%), Gaps = 36/480 (7%) Query: 2 KATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGI------SA 55 + V ++W RNDLRI DN+AL+ A +S + V+ V+ P + Sbjct: 17 SSRNGKGVSIMWFRNDLRIVDNEALFKAWASS-SSVLPVYCVDPRHFGTTHYFKFPKTGE 75 Query: 56 RQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEIN 115 ++ F+ SL+ ++K+L ++G+ + L S ++ + Sbjct: 76 LRAQFLLESLVDLKKNLKKRGLDLVIRSGNPEF----ILPSLVEAVGADTIYAQEETCSE 131 Query: 116 EVRRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLR 175 E++ +K ++K + + + + + + ++ VYT FRKA+ + Sbjct: 132 ELQVEKAVKKSIGTKAKLELVWGTTMYHLNDLPFTTARLPDVYTQFRKAVESSSRVRPCL 191 Query: 176 SLPVPAIRLTGPVTP--SNIPRFFDYPFQAIDP---------MFPIGEQNALHILRKFCK 224 LP L + ++ + + + P F GE A+ L ++ Sbjct: 192 KLPQTLGPLPDSLGEKVGDLDKVPNLSHLGLRPREQSSLAAMQFAGGETAAIQRLCEYFW 251 Query: 225 EKV--YYYVEQRD-IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSW 281 K Y E R+ + +++ SP+L+ G +SPR ++ + + Sbjct: 252 TKNCLRNYKETRNGMLGADYSTKFSPWLASGSISPRFIHEEASIKYEKERT-ANNSTYWV 310 Query: 282 LNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMR 341 L ELIWR+++R L Y + W++D L +AW+ G TG+P+IDA M+ Sbjct: 311 LFELIWRDYFRFLSMKYGNSIFHLEGPRKVRTKSWSQDKTLFEAWRTGTTGYPLIDANMK 370 Query: 342 QLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGND 401 +L G+M NR R I SFLV+D+ +DWR+G E+F S LLD D SN G W + A GND Sbjct: 371 ELYATGFMSNRGRQIVCSFLVRDMGIDWRMGAEWFESCLLDYDPCSNYGNWTYGAGVGND 430 Query: 402 SVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIV 461 R F+ Q + +DP G+++ HW+P+L +PT H P + Y IV Sbjct: 431 PRE-DRYFSIPKQAQTYDPDGSYVSHWIPQLQELPTDARHFPK---------VGYLKKIV 480 >gi|126663928|ref|ZP_01734923.1| Deoxyribodipyrimidine photolyase [Flavobacteria bacterium BAL38] gi|126624192|gb|EAZ94885.1| Deoxyribodipyrimidine photolyase [Flavobacteria bacterium BAL38] Length = 486 Score = 329 bits (844), Expect = 5e-88, Method: Composition-based stats. Identities = 112/484 (23%), Positives = 198/484 (40%), Gaps = 32/484 (6%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 + +VW + DLR+ D++AL+ A S ++ ++I P + S R FI SL + Sbjct: 1 MKVVWFKRDLRLHDHEALHEALSTSGKTLL-LYIFEPSLMKDIHYSQRHFDFIKQSLEAL 59 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEV-RRDKLLEKRL 127 QK L + Q +++ + +++ +++ I RD + K L Sbjct: 60 QKELQKYHTQILIIQG----EAVPVFQKLTQVISIREIYSHQETGIKLTYERDLAVGKLL 115 Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187 + + I I N ++ K +++ + + L P P Sbjct: 116 KEKGIIW---------NEYITNGVIRGIKNRKNWKEDWYDYMDKDCLPFNPTP-RSFVKY 165 Query: 188 VTPSNIPRFFDYPFQAI--DPMFP-IGEQNALHILRKFCKEKVYYYVEQRDIP--AIQGT 242 + + FD P +P F G AL + F +E+V Y P +G Sbjct: 166 IEIEELENAFDVPSIKTVHNPNFQKGGVPTALRYMNSFFEERVQNYSNHISKPELGRKGC 225 Query: 243 SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVC 302 S+LSPY++ G +S RQ + + E K + + + L W+ + S Sbjct: 226 SRLSPYIAWGNISIRQVYTKAWEMHQQGKFKRQISN--FASRLRWQAHFIQKFE-MESTM 282 Query: 303 MGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLV 362 + + +AW G TG P++DA MR LNT G+++ R+R + SF Sbjct: 283 EFIAVNKGYRNLIQRVNEKYHKAWITGKTGVPLVDACMRCLNTTGYLNFRMRALVVSFYT 342 Query: 363 KDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQG 422 L W+ + Q LD + + Q G + R++NP D G Sbjct: 343 HHLFQPWQNCSPHLAQQFLDFEPGIHYPQIQMQ--AGVTGINTLRVYNPVKNSYEHDADG 400 Query: 423 TFIRHWLPELNNVPTQYIHAPHSW------LDKNDLSLNYPLPIVDHKKACHHTLNQYYA 476 TFI+ W+PEL +P ++IH P L ++ +YPLPIV+ ++A + + +++ Sbjct: 401 TFIKKWVPELATIPAEFIHEPWKLTPIEQILYNFEIGKDYPLPIVNLEEARKFSSDFFWS 460 Query: 477 AKKQ 480 +K Sbjct: 461 MRKN 464 >gi|315501047|ref|YP_004079934.1| deoxyribodipyrimidine photo-lyase [Micromonospora sp. L5] gi|315407666|gb|ADU05783.1| Deoxyribodipyrimidine photo-lyase [Micromonospora sp. L5] Length = 440 Score = 329 bits (844), Expect = 5e-88, Method: Composition-based stats. Identities = 138/453 (30%), Positives = 220/453 (48%), Gaps = 29/453 (6%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 +V DLR+ D+ AL AAC D +V+ +++ P +S ++ F++ SL + Sbjct: 5 TAVVLFTRDLRVHDHPALAAACSAFD-RVVPLYVLDPAL---QKLSPNRTRFLHQSLADL 60 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL- 127 +++L ++G + ++++ + + + RR++ L Sbjct: 61 REALRKRGGDLVIRRGDPVAETVK----LARKVGAEGVGLSADVSRYAHRRERRLRAECD 116 Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187 +HR+ + F ++ PG++ Y+V++P+ +A + +L + +RL Sbjct: 117 RHRMFLRLFPGLTIVEPGALRPGGGDHYRVFSPYFRAWQGVRWRDELAAP--KRVRLPDG 174 Query: 188 VTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSP 247 V P R D P GE A L + + Y + D A TS+LSP Sbjct: 175 VDPG---RLPDPPKGDSPDAAVGGEAVARRRLTAWLPT-LDRYDDIHDDMAGDETSRLSP 230 Query: 248 YLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPF 307 YL G +SP + + + ++ +L WR+FY ++A +P + Sbjct: 231 YLRFGCVSP-----------LAVATRAGGWDGPFVRQLCWRDFYHQVVAGFPDLSTVAYR 279 Query: 308 IPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLV 367 E +W D H AW +G TG PI+DA MRQL GWMHNR R+ITA +L K L + Sbjct: 280 RGARE--DWRDDPHAFDAWAEGRTGMPIVDAGMRQLRAEGWMHNRARLITAGYLTKHLGL 337 Query: 368 DWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRH 427 DWR G E F LLDGD +N+G WQW A TGND+ PY R FNP Q +R+DP G ++R Sbjct: 338 DWRPGLEIFFRWLLDGDRVNNSGNWQWVAGTGNDTRPY-RGFNPVRQAERYDPDGAYVRR 396 Query: 428 WLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPI 460 W+PEL +V + +H P D+ +L+YP P+ Sbjct: 397 WVPELASVAGKAVHQPWRLPDEVRHTLDYPPPL 429 >gi|290962800|ref|YP_003493982.1| deoxyribodipyrimidine photolyase [Streptomyces scabiei 87.22] gi|260652326|emb|CBG75459.1| putative deoxyribodipyrimidine photolyase [Streptomyces scabiei 87.22] Length = 453 Score = 329 bits (844), Expect = 5e-88, Method: Composition-based stats. Identities = 127/468 (27%), Positives = 215/468 (45%), Gaps = 21/468 (4%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M+V +V DLR+ D+ L AA + +V+ +F+ + + + F+ L Sbjct: 1 MNVSVVLFTCDLRLHDHPPLRAAL-DGSRQVVPLFVRDRDVTGAGFAAPNRLAFLADCLR 59 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 + L ++G D +E + + ++ RR++ L + Sbjct: 60 DLDTGLRERGGRLVVRSG----DVVEEVCKVAAEADADEVHLAADVSAYAQRREERLRRA 115 Query: 127 LQHRVICKSFDDSVL--LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL 184 L+ + +V + PG++L + + V+TP+ + ++ S A+ + Sbjct: 116 LEAEGVRLHVHATVTSAVDPGAVLPASTDHFAVFTPYFGHWSRQRLRE--ASAAPRAVHV 173 Query: 185 TGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244 V +P + GE + + + Y ++ D A TS+ Sbjct: 174 PDGVGSEELPSRAGLS-GVSPGLASGGEIEGRSRFSAWLRSGIEAYEDRHDDLAGDATSR 232 Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304 LSP+L G LSP + +R + GA +++ +L WR+F R ++A + Sbjct: 233 LSPHLHFGTLSPVELVHRSRRA-------GGPGAEAFVRQLAWRDFNRQVLA---ARPAA 282 Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364 + W +AW+ G TG+P++DAAMRQL GWMHNR R++TASFL K Sbjct: 283 AKADYRAKHDRWRTVPDEAEAWRAGRTGYPVVDAAMRQLRHEGWMHNRGRLLTASFLAKT 342 Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424 L +DWR+G +F+ L+DGD+A+N WQW A TG D+ P RI NP Q KR+DP G + Sbjct: 343 LYIDWRVGARHFLDLLVDGDVANNQLNWQWMAGTGTDTRP-NRILNPVTQAKRYDPDGEY 401 Query: 425 IRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLN 472 +R W+PEL ++ +H P + +L+YP P+V+ + L Sbjct: 402 VRRWVPELADLAAPAVHEPWKLRGLDRAALDYPEPVVELAEGRERFLR 449 >gi|327541206|gb|EGF27750.1| deoxyribodipyrimidine photolyase [Rhodopirellula baltica WH47] Length = 488 Score = 329 bits (843), Expect = 6e-88, Method: Composition-based stats. Identities = 132/497 (26%), Positives = 214/497 (43%), Gaps = 32/497 (6%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQH-----GISARQSHFI 61 M+ LVW RNDLR D++ A + AV P Q+ ++ F+ Sbjct: 1 MANALVWYRNDLRTIDHEPFLRASTAD--RCFAVHCIDPRQFETTELGFQRTGPFRARFL 58 Query: 62 YASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDK 121 SL ++ L G L S + + ++ + E + Sbjct: 59 IESLTDLRSRLRSLGGELIVRVGRPETVLQHLLPSLA----IDAVHFHHEPGTEEADTAE 114 Query: 122 LLEKRL-QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVP 180 +++ QH + L+ P + ++T FRK + + P+ Sbjct: 115 SVQQLCDQHGIATHVAYGDTLIHPDELPFEIADTPGLFTDFRKEIEKQCEARSPLEEPIR 174 Query: 181 -AIRLTGPVTPSNIPRFFDYPFQAIDP------MFPIGEQNALHILRKFC--KEKVYYYV 231 L V +IP F G+ A + ++ ++++ Y Sbjct: 175 IQGALPEEVNAGDIPTLESLGLSTPPLDDRCLNQFTGGQNAAQQRMEEYIWNEDRLRVYK 234 Query: 232 EQRD-IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREF 290 E R+ + +S+ SP+L+ G LSPR + ++ + + ++ KS + + EL+WR++ Sbjct: 235 ETRNGMLHPNDSSKFSPWLAQGCLSPRMIADHVR-CYEEERVENKS-TYWMIFELLWRDY 292 Query: 291 YRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMH 350 +R + + + ++W D L + W+ G TG+P++DA MR+L T G+M Sbjct: 293 FRWISRKHGVTLFRTSGLRGV-NVDWKSDRELFRRWQDGTTGYPLVDANMRELRTTGYMS 351 Query: 351 NRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFN 410 NR R ASFL K+L +DWR G +F SQL+D D+ASN G W +AA GND+ FR FN Sbjct: 352 NRGRQNVASFLTKNLGIDWRWGARWFESQLVDYDVASNYGNWNYAAGVGNDARG-FRFFN 410 Query: 411 PTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND------LSLNYPLPIVDHK 464 T Q + +D QG + +HWLPEL ++ IH P + L YP PIVD Sbjct: 411 ITKQSRDYDSQGEYAKHWLPELRDLDGTEIHEPWKMSPERQQEVGVTLGKEYPHPIVDLF 470 Query: 465 KACHHTLNQYYAAKKQS 481 + Y AK S Sbjct: 471 DSAKENETTYMRAKAAS 487 >gi|293605130|ref|ZP_06687522.1| deoxyribodipyrimidine photolyase [Achromobacter piechaudii ATCC 43553] gi|292816533|gb|EFF75622.1| deoxyribodipyrimidine photolyase [Achromobacter piechaudii ATCC 43553] Length = 363 Score = 329 bits (843), Expect = 7e-88, Method: Composition-based stats. Identities = 159/359 (44%), Positives = 216/359 (60%), Gaps = 7/359 (1%) Query: 120 DKLLEKRLQH-RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLP 178 D + L V + LL PG++ Y+VYTP+ + L A + ++P Sbjct: 1 DAAVAGALDAIGVDWTLHHGASLLRPGTVTTGKGDCYRVYTPYARTCRDRLRTAPVVAVP 60 Query: 179 VPAIRLTGPVTPSNIPRFFD---YPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRD 235 P + +P +P FD P +AI ++P GE A L F + + Y ++RD Sbjct: 61 PPRPQTPPDWSPDPLPDTFDGFARPSEAIRALWPAGEAAAGDRLEAFTEGVIDAYKDERD 120 Query: 236 IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLM 295 P++ GTS LSPYL+ GVLSP Q L K+GA +W+NEL+WREFY+HL+ Sbjct: 121 FPSLPGTSCLSPYLAAGVLSPGQALRAALSANHGELDSGKAGAATWINELLWREFYQHLL 180 Query: 296 AFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRM 355 A YPS+ M +P P T + W L+AW+QG TG PI+DAAMRQL +GWMHNRLRM Sbjct: 181 AAYPSLSMHQPMKPETAAVPWRDAPDDLRAWQQGKTGIPIVDAAMRQLLALGWMHNRLRM 240 Query: 356 ITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQG 415 +TA FL K+LL+DWR+GE +FM+ L+DGDLA+NNGGWQW+ASTG D+VPYFR+FNP Q Sbjct: 241 VTAMFLSKNLLIDWRLGEAWFMAHLVDGDLAANNGGWQWSASTGADAVPYFRVFNPLSQS 300 Query: 416 KRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQY 474 +RFDP+G F+R WLPEL ++ + IH P YP+PIVD ++ L + Sbjct: 301 RRFDPRGVFLREWLPELADLDDKAIHDPSPMERAAA---GYPMPIVDLAQSRLRALEAF 356 >gi|97047983|sp|Q7UJB1|CRYD_RHOBA RecName: Full=Cryptochrome DASH Length = 488 Score = 329 bits (843), Expect = 7e-88, Method: Composition-based stats. Identities = 129/497 (25%), Positives = 212/497 (42%), Gaps = 32/497 (6%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQH-----GISARQSHFI 61 M+ LVW RNDLR D++ A + AV P Q+ ++ F+ Sbjct: 1 MANALVWFRNDLRTIDHEPFLRASTAD--RCFAVHCIDPRQFETTELGFQRTGPFRARFL 58 Query: 62 YASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDK 121 +L ++ L G L S + + ++ + E + Sbjct: 59 IENLTDLRSRLRSLGGELIVRVGRPETVLQHLLPSLA----IDAVHFHHEPRTEEADTAE 114 Query: 122 LLEKRL-QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVP 180 +++ QH + L+ P + +++T FRK + + P+ Sbjct: 115 SVQQLCDQHGIATHVAYGDTLIHPDELPFEIADTPELFTDFRKEIEKQCEARSPLEEPIR 174 Query: 181 -AIRLTGPVTPSNIPRFFDYPFQAIDP------MFPIGEQNALHILRKFC--KEKVYYYV 231 L V +IP F G+ A + ++ ++++ Y Sbjct: 175 IHGTLPEEVNAGDIPTLESLGLSTPPLDDRCLNQFTGGQNAAQQRMEEYIWNEDRLRVYK 234 Query: 232 EQRD-IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREF 290 E R+ + +S+ SP+L+ G LSPR + ++ + + + + EL+WR++ Sbjct: 235 ETRNGMLHPNDSSKFSPWLAQGCLSPRMIADHVRRYEEERV--KNKSTYWMIFELLWRDY 292 Query: 291 YRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMH 350 +R + + + + ++W D L + W+ G TG+P++DA MR+L T G+M Sbjct: 293 FRWISRKHGATLF-RAGGLRGVNVDWKSDRELFRRWQDGTTGYPLVDANMRELRTTGYMS 351 Query: 351 NRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFN 410 NR R ASFL K+L +DWR G +F SQL+D D+ASN G W +AA GND+ FR FN Sbjct: 352 NRGRQNVASFLTKNLGIDWRWGARWFESQLVDYDVASNYGNWNYAAGVGNDARG-FRFFN 410 Query: 411 PTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND------LSLNYPLPIVDHK 464 T Q + +D QG + +HWLPEL ++ IH P + L YP PIVD Sbjct: 411 ITKQSRDYDSQGEYAKHWLPELRDLDVTEIHEPWKMSPERQQEVGATLGKEYPHPIVDLF 470 Query: 465 KACHHTLNQYYAAKKQS 481 + Y AK S Sbjct: 471 DSAKENETIYMRAKAAS 487 >gi|221116996|ref|XP_002166544.1| PREDICTED: similar to predicted protein [Hydra magnipapillata] Length = 526 Score = 329 bits (843), Expect = 8e-88, Method: Composition-based stats. Identities = 129/499 (25%), Positives = 218/499 (43%), Gaps = 30/499 (6%) Query: 1 MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHG------IS 54 M ++ + W+RNDLR+ DN+ L AC + + V+ ++ P+ ++ Sbjct: 1 MAGFSSRKTIIYWIRNDLRLHDNECLNFACRDG-SHVLPLYCFDPDHYKLTHHFGFLKTG 59 Query: 55 ARQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEI 114 ++ I ++ ++ SL +KG + + + + VT + + ++ Sbjct: 60 IHRAKLILDAVSGLRNSLQKKGSNLVISKHRPKEAIEKLILECEQTAPVTSIVFQKEITK 119 Query: 115 NEVRRDKLLEKRLQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQA- 172 E + + K + I SF S L I Q+ YT FRK + + V+ Sbjct: 120 EETDVEASVFKVCDSKGIKVLSFWGSTLYHIEDIPFQINQIPNTYTLFRKGVEKCPVRKL 179 Query: 173 DLRSLPVPAIRLTGPVTPSNIPRFFDYPFQA------IDPMFP--IGEQNALHILRKFCK 224 + + ++ +P + F + +FP E +A+ L ++ Sbjct: 180 NPIPDKISSLPNLKNFPLGEVPLLNELGFDKNEYEIDVRSVFPFNGSEVDAIKRLNEYLW 239 Query: 225 EKVY--YYVEQRD-IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSW 281 Y E R+ + +++ SP+L++G LSPR ++++K+ IK + Sbjct: 240 GNNAILTYKETRNGLLGKDYSTKFSPWLALGSLSPRMIYHKIKDFEEQKKIKENDSTYWV 299 Query: 282 LNELIWREFYRHLMAFYPS-VCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAM 340 + ELIWR++++ + + + + V W +D +L W G TG P +DA M Sbjct: 300 VFELIWRDYFKFICSKHGNKVFFKGGLKGGKGPWTWKQDLNLFMKWANGDTGIPFVDANM 359 Query: 341 RQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGN 400 ++L GWM NR R ASFLVKDL +DWR+G E+F S L+D D+ SN G W + A GN Sbjct: 360 KELLATGWMSNRGRQNVASFLVKDLNLDWRMGAEWFESLLIDSDVCSNYGNWNYIAGIGN 419 Query: 401 DSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKN------DLSL 454 D R FN Q +D +G ++R WLP L + H P DL Sbjct: 420 DPR-SNRKFNVIKQAADYDEEGDYVRTWLPVLKKL--GICHTPWRLSASELNAGGVDLGK 476 Query: 455 NYPLPIVDHKKACHHTLNQ 473 NYP PI+ + H L Sbjct: 477 NYPHPIIVAPEWAKHALKM 495 >gi|221638553|ref|YP_002524815.1| Deoxyribodipyrimidine photo-lyase type I [Rhodobacter sphaeroides KD131] gi|221159334|gb|ACM00314.1| Deoxyribodipyrimidine photo-lyase type I [Rhodobacter sphaeroides KD131] Length = 471 Score = 328 bits (842), Expect = 9e-88, Method: Composition-based stats. Identities = 138/474 (29%), Positives = 216/474 (45%), Gaps = 25/474 (5%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 ++W R DLR+ DN L A +I +FI PE + A + + + Sbjct: 8 ILWFRRDLRLADNPMLAEAAATG-RPLIPLFILDPE---TEALGAAPKWRLGLGVEAFAR 63 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130 +L G + ++ L++ + + ++R +E RD+ ++ L+ Sbjct: 64 ALEGLGSRLVLRRGP----ALAVLEALVAETGAAGVHWSRLWEPAWRARDEGVKAGLRQA 119 Query: 131 VI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQ---ADLRSLPVPA-IRLT 185 I S + P + Y+VYTPF KA+ V LP PA ++ Sbjct: 120 GIEAASHAGHTIFEPREVETGQGGFYRVYTPFWKAVKDRPVAASSPPPARLPSPAEWPVS 179 Query: 186 GPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245 + ++ R + + P +GE A L +F + Y +RD P TS+L Sbjct: 180 ERLACWDLGRAMNRGAAVVAPHLAVGEAAAAERLARFLSGPLDRYAAERDRPDAPVTSRL 239 Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305 S L+ G +S R W+ + ++GA +L E+ WREF HL+ P + + Sbjct: 240 SENLTYGEISARSLWHAGMR----ARAEGRAGAEKFLQEIAWREFGWHLLYHTPEIAR-R 294 Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365 + + W D+ + W++G TG P +DAAMR+L G MHNR R+I S+L K L Sbjct: 295 NWRGDWDAFPWRGDNPDAERWRRGMTGEPFVDAAMRELFVTGTMHNRARLIAGSYLTKHL 354 Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425 L DWR+G+ +F L+D D ASN GWQW A +G D+ PYFRIFNP Q ++FDP+ + Sbjct: 355 LTDWRVGQAWFEDCLIDWDPASNALGWQWVAGSGPDASPYFRIFNPATQAEKFDPESAYR 414 Query: 426 RHWLPELNNVPTQYIHA-----PHSWLDKNDLSLNYPLPIVDHKKACHHTLNQY 474 + ++ E+ P A P SW + D YP P+V + L Y Sbjct: 415 QRFVAEIARRPGPEALAFFEAVPRSWGLRPDRC--YPGPVVGLAEGRERALAAY 466 >gi|83814965|ref|YP_445212.1| deoxyribodipyrimidine photolyase [Salinibacter ruber DSM 13855] gi|83756359|gb|ABC44472.1| deoxyribodipyrimidine photolyase [Salinibacter ruber DSM 13855] Length = 463 Score = 328 bits (841), Expect = 1e-87, Method: Composition-based stats. Identities = 136/472 (28%), Positives = 200/472 (42%), Gaps = 25/472 (5%) Query: 10 HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69 L R DLR+ DN L AC SD +V+ FI P Q + F + + Sbjct: 5 SLFLFRRDLRLADNTGLARACRASD-EVVPAFIFDPRQCDP----DNNAFFSEHAFAFLV 59 Query: 70 KSLSQKGIVFQYHQCSNF---DDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 +SL + + F D L ++ + NR Y RRD L Sbjct: 60 RSLKELRRRLRERGGRLFVFEGDPAAILSELVSAGDISAVHVNRDYTPFARRRDDQLRSV 119 Query: 127 LQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185 + +S + +L P + Y +TPFR+ + P Sbjct: 120 CREEGARFQSSNALLLTEPEEVQPSGGGAYHTFTPFRRRAQSVSTPPPRGKVEGPFCDRA 179 Query: 186 GPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245 V + + + YP + G + L + E + Y + R PA + + L Sbjct: 180 LSVETTPLETYDRYPTDDLRA--KGGRAEGIEFLEEI--ETLGAYRDARHQPAKESLTAL 235 Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305 S + G +S R+ +K+ F D +++ WR+FY HL+ P Sbjct: 236 SAHHKFGTISIRESLYVVKKAFED--------YHKLISQFYWRDFYTHLLFHRPEQLTT- 286 Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365 P I W + W +G TG P +DA MR+L G+MHNR+RM+ ASFL KDL Sbjct: 287 SLRPIGRHIPWRNERGEFDRWHEGATGVPFVDAGMRELRETGYMHNRVRMVVASFLTKDL 346 Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425 LVDWR G ++F L D D A N G WQWAAS G D RI+NP Q ++ DP+ +I Sbjct: 347 LVDWRWGAQHFARTLTDYDPAVNAGNWQWAASVGTDYR--LRIYNPYSQAEKHDPEAEYI 404 Query: 426 RHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477 + W+PE+ +V + A + D +D + YP PIVD A H + + A Sbjct: 405 KRWVPEVRDVDADRL-ASGTQEDFSDAAPGYPAPIVDRNDAYHRAKDAFREA 455 >gi|302799264|ref|XP_002981391.1| hypothetical protein SELMODRAFT_114313 [Selaginella moellendorffii] gi|300150931|gb|EFJ17579.1| hypothetical protein SELMODRAFT_114313 [Selaginella moellendorffii] Length = 559 Score = 328 bits (841), Expect = 1e-87, Method: Composition-based stats. Identities = 132/507 (26%), Positives = 235/507 (46%), Gaps = 38/507 (7%) Query: 5 TAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYAS 64 + + +LVW R DLR+ D A N+ V+ +FI P + + ++ S Sbjct: 3 NSKACNLVWFRRDLRVED-NPALLAAANAPGVVLPIFIWCPAEEGEFQPGRHSRWWLKQS 61 Query: 65 LLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQY-EINEVRRDKLL 123 L+ + SL+ G + + D++ L + T++F N Y + V RD+ + Sbjct: 62 LIHLDASLASYGCSLLLQKGN---DTLSVLVNIARATGSTQIFCNHLYADPITVARDRRV 118 Query: 124 EKRL-QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRS------ 176 ++RL ++ + +F+ L P I + + + F ++ + D+ Sbjct: 119 KQRLLEYGIFVHNFNCDTLHEPWEIYDEQGHAFTTFAGFWNRFLRTRFEPDMPDSSQARI 178 Query: 177 --------LPVPAIRLTGPVTPSNIPRFFDYPFQAIDPM----FPIGEQNALHILRKFCK 224 + A L P + + D ++ + + + G ++A L+ F Sbjct: 179 FPYREYLDVISFAGNLPTPCSIEELC-LEDESEKSSNELLARTWSPGCKHANDALQAFLV 237 Query: 225 EKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVD--LLIKPKSGAFSWL 282 + Y R+ TS LSPYL G LS R+ +N ++ + D L P+ A +L Sbjct: 238 APLNDYTTSRETTD-NSTSHLSPYLHFGELSIRKLYNCIRSKQRDEEQLFCPRRNAHLFL 296 Query: 283 NELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQ 342 + RE+ R++ +P + W+ D +AWK G TG+P++DAAMR+ Sbjct: 297 RAIGLREYSRYISFHFPFTQE----QSLLKNFPWSNDEIHFKAWKLGKTGYPLVDAAMRE 352 Query: 343 LNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDS 402 L + GW+H +LR++T+SFL+K L + W G +YF LLD DL S+ GW++ + D Sbjct: 353 LWSTGWLHCKLRVVTSSFLIKFLQLPWTWGIKYFWDTLLDADLESDILGWKYVSGCLTDG 412 Query: 403 VPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSW------LDKNDLSLNY 456 R+ +P +G + D +G ++R WLPEL+ +P Q+IH P+S +L NY Sbjct: 413 HELDRVLDPHEEGCKLDSKGEYVRRWLPELSRLPNQWIHHPYSAPVSRLQAAGVELGTNY 472 Query: 457 PLPIVDHKKACHHTLNQYYAAKKQSLL 483 P PIVD + A + + ++++ + Sbjct: 473 PKPIVDMEVAKYRLSQAVKSMREKNAV 499 >gi|301617517|ref|XP_002938187.1| PREDICTED: cryptochrome-2-like [Xenopus (Silurana) tropicalis] Length = 862 Score = 328 bits (841), Expect = 1e-87, Method: Composition-based stats. Identities = 139/506 (27%), Positives = 214/506 (42%), Gaps = 44/506 (8%) Query: 6 AMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPE----QWRQHGISARQSHFI 61 AM LVW R DLR+ DN AL +A + VI VF+ Q +++ Sbjct: 228 AMKPVLVWFRRDLRLHDNPALISALEHG-VPVIPVFLWCINEETGQNFTLATGGATKYWL 286 Query: 62 YASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDK 121 + +LL++ +SL Q+ + + + E L S + + N YE RD Sbjct: 287 HHALLKLNQSLIQRFGSHIIFRVARSCE--EELVSLVHETGADTIIINAVYEPWLKERDD 344 Query: 122 LLEKRLQ-HRVICKSFDDSVLLPPGSILNHALQMYKVYT--PFRKALIQN------LVQA 172 L+ + L+ H V K L P S+ + + + + F +N + Sbjct: 345 LISETLRRHGVELKKHHSYCLYEPDSVSTEGVGLRGIGSVSHFMSCCKRNNSAPIGMPLD 404 Query: 173 DLRSLPVPAIRL---------TGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFC 223 R LP P G + D+ I + E A L F Sbjct: 405 APRCLPAPCNWPESDHLDTLELGKMPHRKDGTLIDWAVT-IRESWDFSEDGAYTCLANFL 463 Query: 224 KEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLN 283 ++ V +Y ++ TS +SPYL G +SPR + K +L Sbjct: 464 QDGVKHYEKESGRADKPYTSHISPYLHFGQISPRTVLHEAYFT--------KKNVPKFLR 515 Query: 284 ELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQL 343 +L WR+ L+ +P + +P P + W+ D + L+AW++G TG+P++DAAMR+L Sbjct: 516 KLAWRDLAYWLLILFPDMP-SEPVRPAYKSQRWSSDLNHLRAWQKGLTGYPLVDAAMREL 574 Query: 344 NTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSV 403 GWM N R + ASFLV L + W G +F LLD D+A N WQ +G D Sbjct: 575 WLTGWMCNYSRHVVASFLVAYLHIHWVHGYRWFQDTLLDADVAINAMMWQNGGMSGLDHW 634 Query: 404 PYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPH----SWLDKND--LSLNYP 457 + + +P DP G+++R W PEL +P +YIH P S L + L NYP Sbjct: 635 NF--VMHPVDSALTCDPYGSYVRKWCPELAGLPDEYIHKPWKCAPSQLRRAGVILGRNYP 692 Query: 458 LPIV-DHKKACHHTLNQYYAAKKQSL 482 IV D ++ +L +K+ L Sbjct: 693 HRIVLDLEERREQSLKDVVEVRKKHL 718 >gi|133754344|gb|ABO38436.1| (6-4) photolyase [Danaus plexippus] Length = 501 Score = 328 bits (841), Expect = 1e-87, Method: Composition-based stats. Identities = 122/497 (24%), Positives = 219/497 (44%), Gaps = 32/497 (6%) Query: 5 TAMSVHLVWLRNDLRITDNKALYAACHNSDAK---VIAVFIATPEQWRQHGISARQSHFI 61 T ++ + W R DLR+ DN AL A + ++ + + +++ P+ + + + F+ Sbjct: 2 TKVASVIHWFRLDLRLHDNLALRNAINEAENRKQILRPIYVIDPDIKNR--VGCNRLRFL 59 Query: 62 YASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDK 121 + SL + SL + + +IE L + V L + + V++D+ Sbjct: 60 FQSLKNLDTSLRKINTRLYVIKGK----AIECLPKLFDEWHVKFLTLQVDIDADLVKQDE 115 Query: 122 LLEKRLQHRVI--CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPV 179 ++E+ + I K +V + + + Y F + V+ ++ Sbjct: 116 VIEEFCEANNIFVVKRMQHTVYDFNSVVKKNNGSIPLTYQKFLSLVSDVQVKDIIQISKG 175 Query: 180 PAIRLTGPVTPS---NIPRFFDYP---FQAIDPMFPIGEQNALHILRKFCKEKVY--YYV 231 + S +IP ++ + + +P GE L L + +K + + Sbjct: 176 VSDECKASDYDSQGYDIPSLEEFGVNESELSECKYPGGESEGLKRLDVYMAKKQWVCNFE 235 Query: 232 EQRDIPA--IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWRE 289 + + P T+ LSPY+S G LS + +++LK+ V+ K S + +L+WRE Sbjct: 236 KPKSSPNSIEPSTTVLSPYISHGCLSAKLFYHKLKQ--VENGSKHTLPPVSLMGQLMWRE 293 Query: 290 FYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWM 349 FY + + +I W K+ L+AW +G TG+P +DA MRQL GW+ Sbjct: 294 FYYTAGSGTENFDKM-VGNSVCTQIPWKKNDAHLKAWAEGKTGYPFVDAIMRQLKQEGWI 352 Query: 350 HNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRI 408 H+ R + A FL + DL + W G + F LLD D + N G W W +++ Y+R+ Sbjct: 353 HHLARHMVACFLTRGDLWISWEEGAKVFEDFLLDYDWSLNAGNWMWLSASAFFYK-YYRV 411 Query: 409 FNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWL------DKNDLSLNYPLPIVD 462 ++P GK+ D G +IR ++PEL P+++I+ P + YP IVD Sbjct: 412 YSPVAFGKKTDKDGLYIRKYVPELKKYPSEFIYEPWKAPKGVQKTAGCIIGEGYPNRIVD 471 Query: 463 HKKACHHTLNQYYAAKK 479 H K + + AA K Sbjct: 472 HDKVHKDNIQKMNAAYK 488 >gi|126726813|ref|ZP_01742652.1| deoxyribodipyrimidine photolyase [Rhodobacterales bacterium HTCC2150] gi|126703771|gb|EBA02865.1| deoxyribodipyrimidine photolyase [Rhodobacterales bacterium HTCC2150] Length = 476 Score = 328 bits (841), Expect = 1e-87, Method: Composition-based stats. Identities = 137/473 (28%), Positives = 220/473 (46%), Gaps = 24/473 (5%) Query: 16 NDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQKSLSQK 75 +LR++D++ L AA S VI VFIA + + A L + L + Sbjct: 21 RNLRLSDHQPLLAA-QQSGRPVIPVFIADDAFFA---LGAAPKWRFGLGLAAFSEQLEKI 76 Query: 76 GIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL-QHRVICK 134 G + D L + + + + R Y+ + + RD ++ L + ++ + Sbjct: 77 GSKLLLRRG----DVQSVLLDLIHETQACAVLWERSYDPSSINRDTAIKMALGEEGIVAQ 132 Query: 135 SFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP----VTP 190 SF ++L+ P I YKV+TPF + L Q ++ ++ P + Sbjct: 133 SFSGALLIEPWEIATKTGGFYKVFTPFWRNLHQMIIAPPASTVSNLVSPTDWPKGEDIKD 192 Query: 191 SNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLS 250 + + + +GE+ A+ KF + Y ++RD PAI TS+LS L+ Sbjct: 193 WQLGQGMMRGLDVVGDHICVGEKAAVDRCEKFLSDNCNEYNDKRDFPAIDATSKLSENLA 252 Query: 251 IGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPW 310 G +SPR W+ + + ++ +L WR+F HL P + + Sbjct: 253 YGEISPRLIWHLAQ----KVAHIDDVNVVPFIRQLAWRDFAWHLTYHTPHILDAN-WKAG 307 Query: 311 TEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWR 370 + W + AW++G TG ++DAAMR+L G MHNR RMI AS+L K L+VDWR Sbjct: 308 WDTFPWITKGPEVLAWQRGQTGIELVDAAMRELYVTGRMHNRARMIAASYLTKHLMVDWR 367 Query: 371 IGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLP 430 +G+E+F L+D DLA+N GWQW A TG D+ PYFR+FNP Q ++FD + + WL Sbjct: 368 VGQEWFGDTLVDMDLAANAMGWQWVAGTGPDASPYFRVFNPDGQAEKFDKERKYRDFWLN 427 Query: 431 ELNNVPTQYI-HAPHSWLDKNDLSLNY-PLPIVDHKKACHHTLNQYYAAKKQS 481 + + Q+ AP SW ++ LN+ P P++ L Y + KK Sbjct: 428 PVQDGARQFAKAAPKSW----NIDLNHRPKPLISLADGRARALTAYSSLKKSG 476 >gi|29467477|dbj|BAC67177.1| cryptochrome 2 [Armoracia rusticana] Length = 617 Score = 328 bits (841), Expect = 1e-87, Method: Composition-based stats. Identities = 126/515 (24%), Positives = 209/515 (40%), Gaps = 59/515 (11%) Query: 7 MSVH---LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYA 63 M+ + +VW R DLRI DN AL AA H V VFI PE+ Q ++ Sbjct: 1 MTTNKKTIVWFRRDLRIEDNPALAAAAHEG--SVFPVFIWCPEEEGQFYPGRASRWWMKQ 58 Query: 64 SLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLL 123 SL + +SL G + N ++ + TK+ +N Y+ + RD + Sbjct: 59 SLAHLSQSLKALGSELTLIKTHN---TVSAILDCIRITGATKVVFNHLYDPVSLVRDHTV 115 Query: 124 EKRLQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAI 182 +++L I +SF+ +L P I + + ++ + K + +++ + P + Sbjct: 116 KEKLVELGISVQSFNGDLLYEPWEIYFEKGKPFTNFSSYWKKCLDMSIESVMLPPPWRLM 175 Query: 183 RLTGPVTPSNIPRFFDYPFQA---------IDPMFPIGEQNALHILRKFCKEKVYYYVEQ 233 ++ + + + + G NA IL +F ++++ Y + Sbjct: 176 PISTAAEAVWACSIEELGLENEAEKPSNALLTRAWSPGWSNADKILNEFIEKQLIDYAKN 235 Query: 234 RDIPAIQGTSQLSPYLSIGVLSPRQCWNRLK--------------EEFVDLLIKPKS--- 276 TS LSPYL G +S R+ + + +E DL +K Sbjct: 236 SKKVVGNSTSLLSPYLHYGEISVRRIFQCARMKQIIWARDKNSEGDESADLFLKGIGLRE 295 Query: 277 --GAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFP 334 G + ++ L+ + F + F + +W GY Sbjct: 296 YLGIYVSISRLLTSNLCGVIFVFSLGMADVDKFQGLETRQDWLSVGGCRNERALGY---- 351 Query: 335 IIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQW 394 G MHNRLR+I +SF VK LL+ W+ G +YF LLD DL + GWQ+ Sbjct: 352 ------------GCMHNRLRVIVSSFAVKFLLLPWKWGMKYFWDTLLDADLECDILGWQY 399 Query: 395 AASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSW------LD 448 + + D R+ NP IQG ++DP+G +IR WLPEL +PT++IH P Sbjct: 400 ISGSLPDGHELDRLDNPAIQGAKYDPEGEYIRQWLPELARLPTEWIHHPWDAPLTVLKAS 459 Query: 449 KNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQSLL 483 +L NY PI+D A ++ ++ Sbjct: 460 GVELGTNYAKPILDIDTARELLTKAISRTREAQIM 494 >gi|51948352|gb|AAU14280.1| cryptochrome-like protein 1 [Ostreococcus tauri] Length = 559 Score = 328 bits (840), Expect = 1e-87, Method: Composition-based stats. Identities = 137/549 (24%), Positives = 200/549 (36%), Gaps = 76/549 (13%) Query: 2 KATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFI 61 + A LVW R LR+ DN AL ++ A VF+ P + + A + F+ Sbjct: 6 TSAAAKGRTLVWFRKALRVHDNPALSRGTLHATA-CQPVFVLDPWFCQPSRVGANRMRFL 64 Query: 62 YASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDK 121 SL + L +G L C + RV + + E RD Sbjct: 65 LQSLRDLDAQLRARGSSLLVLHGEPRV----VLPRACKKWRVDSVTWEHDIEPYAKIRDA 120 Query: 122 LLEKRLQ-HRVICKSFDDSVLLPPGSILNH-ALQMYKVYTPFRKALIQNLVQADLRSLPV 179 + L+ V C + L +L Y F K + + Sbjct: 121 AVRGALERAGVECHAASGHTLYDVDEMLEKCKGAPPTTYQGFFKIVDKMGAPNAPIDAME 180 Query: 180 P------------AIRLTGPVTPSNIPRFFDYPFQAI--DPMFPI--GEQNALH------ 217 + G IP D ++ + D FP GE L Sbjct: 181 KMPGSFASSDEETKALVQGVADAYGIPTLEDLGYEPLGDDEGFPGVGGETEGLRRLRLML 240 Query: 218 -------ILRKFCKEKVYYY-----------------VEQRDIPAIQGTSQ--------- 244 K + R TS Sbjct: 241 ARKEWIGQFEKPSTNPTTRFHGLSQSGKTKPKSPFEIAAGRSKDGDASTSGAEALMIPST 300 Query: 245 --LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVC 302 LSPY+ G +SPR ++ L + +L K S + +L+WREFY + A + Sbjct: 301 TALSPYMKFGCVSPRVFYHELTAVYKELEGKHSKPPTSLMGQLMWREFYYLVAAGTKNFD 360 Query: 303 MGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLV 362 + +I W KD L AW+ TGFP IDAAM QL GW+H+ R A FL Sbjct: 361 KMEG-NAICRQIPWKKDRELFAAWENAQTGFPWIDAAMTQLRREGWLHHLARHAVACFLT 419 Query: 363 K-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQ 421 + DL + W G + F L+D D A NNG W W S YFR+++P K++D Sbjct: 420 RGDLFIHWEWGRDAFDRDLVDADWALNNGNWMW-LSCSAFFYQYFRVYSPIAFAKKYDKD 478 Query: 422 GTFIRHWLPELNNVPTQYIHAPHSWL------DKNDLSLNYPLPIVDHKKACHHT---LN 472 G ++RH+LP L N+P++Y++ P + ++YP PIVDH A + Sbjct: 479 GQYVRHYLPVLKNMPSKYVYEPWLAPLDVQKKAGCVVGVDYPAPIVDHSAASKRCVDDIA 538 Query: 473 QYYAAKKQS 481 YAA K + Sbjct: 539 TAYAAHKDA 547 >gi|32477278|ref|NP_870272.1| DNA photolyase [Rhodopirellula baltica SH 1] gi|32447829|emb|CAD77347.1| DNA photolyase [Rhodopirellula baltica SH 1] Length = 526 Score = 328 bits (840), Expect = 2e-87, Method: Composition-based stats. Identities = 129/497 (25%), Positives = 212/497 (42%), Gaps = 32/497 (6%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQH-----GISARQSHFI 61 M+ LVW RNDLR D++ A + AV P Q+ ++ F+ Sbjct: 39 MANALVWFRNDLRTIDHEPFLRASTAD--RCFAVHCIDPRQFETTELGFQRTGPFRARFL 96 Query: 62 YASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDK 121 +L ++ L G L S + + ++ + E + Sbjct: 97 IENLTDLRSRLRSLGGELIVRVGRPETVLQHLLPSLA----IDAVHFHHEPRTEEADTAE 152 Query: 122 LLEKRL-QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVP 180 +++ QH + L+ P + +++T FRK + + P+ Sbjct: 153 SVQQLCDQHGIATHVAYGDTLIHPDELPFEIADTPELFTDFRKEIEKQCEARSPLEEPIR 212 Query: 181 -AIRLTGPVTPSNIPRFFDYPFQAIDP------MFPIGEQNALHILRKFC--KEKVYYYV 231 L V +IP F G+ A + ++ ++++ Y Sbjct: 213 IHGTLPEEVNAGDIPTLESLGLSTPPLDDRCLNQFTGGQNAAQQRMEEYIWNEDRLRVYK 272 Query: 232 EQRD-IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREF 290 E R+ + +S+ SP+L+ G LSPR + ++ + + + + EL+WR++ Sbjct: 273 ETRNGMLHPNDSSKFSPWLAQGCLSPRMIADHVRRYEEERV--KNKSTYWMIFELLWRDY 330 Query: 291 YRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMH 350 +R + + + + ++W D L + W+ G TG+P++DA MR+L T G+M Sbjct: 331 FRWISRKHGATLF-RAGGLRGVNVDWKSDRELFRRWQDGTTGYPLVDANMRELRTTGYMS 389 Query: 351 NRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFN 410 NR R ASFL K+L +DWR G +F SQL+D D+ASN G W +AA GND+ FR FN Sbjct: 390 NRGRQNVASFLTKNLGIDWRWGARWFESQLVDYDVASNYGNWNYAAGVGNDARG-FRFFN 448 Query: 411 PTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND------LSLNYPLPIVDHK 464 T Q + +D QG + +HWLPEL ++ IH P + L YP PIVD Sbjct: 449 ITKQSRDYDSQGEYAKHWLPELRDLDVTEIHEPWKMSPERQQEVGATLGKEYPHPIVDLF 508 Query: 465 KACHHTLNQYYAAKKQS 481 + Y AK S Sbjct: 509 DSAKENETIYMRAKAAS 525 >gi|302795740|ref|XP_002979633.1| hypothetical protein SELMODRAFT_233387 [Selaginella moellendorffii] gi|300152881|gb|EFJ19522.1| hypothetical protein SELMODRAFT_233387 [Selaginella moellendorffii] Length = 527 Score = 327 bits (839), Expect = 2e-87, Method: Composition-based stats. Identities = 129/496 (26%), Positives = 205/496 (41%), Gaps = 41/496 (8%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHG---------ISARQSH 59 + L+W R LR+ DN +L AACH S V VF+ P + + Sbjct: 1 MALLWFRKGLRLHDNPSLEAACHGS-RNVYPVFVLDPWFLAPDPRASSPGSARVGINRIQ 59 Query: 60 FIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRR 119 F+ SL + ++LS +G + I+ + + R+ KL + E + R Sbjct: 60 FLLESLQDLDRNLSSRGSKLLLVHG----NPIQVIPELLDKWRIRKLCFEFDTEPYALDR 115 Query: 120 DKLLEKRLQHRVICKSFD-DSVLLPPGS-ILNHALQMYKVYTPFRKALIQNLVQADLRSL 177 D +++ + + I + P I + + + F K L+ Sbjct: 116 DAKIKEHAKDKGIELHCPVSHTIFNPDLLIAKNGGKAPLTFQSFCKNLVPATKPIGNGPS 175 Query: 178 PVPAIRLTGPVTPSNIPRFFDYPFQAID---PMFPIGEQNALHILRKFCKEKVY--YYVE 232 +P + +P + + F GE AL L + + + + Sbjct: 176 AIPPTGDLHGIKVVPVPTLEELGYADFHEDFSPFRGGETVALTRLEDSLANEKWVCEFEK 235 Query: 233 QRDIPAI---QGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWRE 289 + P T+ LSPYL G LS R ++R+KE + S S +L+WRE Sbjct: 236 PKGDPTAFIKPATTVLSPYLKFGCLSSRLVYSRVKEVYSRAK-SFTSPPVSLEAQLLWRE 294 Query: 290 FYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWM 349 F+ + P ++I W D LL AW+ G TG+P IDAAM QL GWM Sbjct: 295 FFYTAAYATANFDKM-VGNPICKQIPWKDDDELLSAWRDGRTGYPWIDAAMTQLRKWGWM 353 Query: 350 HNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRI 408 H+ R A FL + D+ V W G + F L+D D + NNG W W +++ + Y RI Sbjct: 354 HHLARHAVACFLTRGDMFVYWEKGRDVFDRLLIDADWSINNGNWLWLSASAFFNQ-YHRI 412 Query: 409 FNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWL------DKNDLSLNYPLPIVD 462 ++P K++D QG +I+H+LPE +I+ P K + +YP P++D Sbjct: 413 YSPITFAKKYDRQGNYIKHFLPE-------FIYEPWKAPAEIQRKAKCIIGKDYPTPVLD 465 Query: 463 HKKACHHTLNQYYAAK 478 H A + AA Sbjct: 466 HAAASKICRERMGAAY 481 >gi|254449817|ref|ZP_05063254.1| deoxyribodipyrimidine photolyase family protein [Octadecabacter antarcticus 238] gi|198264223|gb|EDY88493.1| deoxyribodipyrimidine photolyase family protein [Octadecabacter antarcticus 238] Length = 522 Score = 327 bits (839), Expect = 2e-87, Method: Composition-based stats. Identities = 118/486 (24%), Positives = 197/486 (40%), Gaps = 29/486 (5%) Query: 8 SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67 + +VW + DLRI D+ L AA +A +I ++I PE W+Q S R HFI+ L Sbjct: 15 APRIVWFKRDLRINDHAPLLAASRT-NAPIIPLYIVEPEYWQQPFASRRHWHFIHDGLCD 73 Query: 68 VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYE-INEVRRDKLLEKR 126 + L++ G DS + + L V+ ++ + + + RD ++K Sbjct: 74 LDSGLAELGQHLVVK----VGDSCDVIKQLHLDHDVSHVYAHEETGNLWTYNRDIAVQKL 129 Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 Q+ I + P + + L+ ++ R A + + +L + Sbjct: 130 CQNHGIA------LHEAPTNGVVRRLRSRDDWSKIRNARMAEKILPKPNALNSFPPCSSD 183 Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ--GTSQ 244 + N P F + P + G + A+ LR F + Y+ P S+ Sbjct: 184 TLPDKNDPIFGNVPIGKVQ---KGGRKQAVADLRSFLNHRSRQYLYHISAPDSSEFHCSR 240 Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSG----AFSWLNELIWREFYRHLMAFYPS 300 LS +L+ G LS R+ + + L ++ + L WR + + P Sbjct: 241 LSAHLAWGTLSVREVAQSIVKRHAQLSPDENKSFGRNLTAFGSRLAWRCHFIQKIEDQPE 300 Query: 301 VCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASF 360 + + + QAW G TG+P +DA MR L GW+ R+R + SF Sbjct: 301 IETHCMHPAFEGLRVGEHNDLHFQAWASGQTGYPFVDACMRNLTAEGWITFRMRAMLVSF 360 Query: 361 LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDP 420 L +DWR+ E+ D + + Q +G + R++NP Q DP Sbjct: 361 ASYQLWLDWRVTGEHLARLFTDFEPGIHYSQLQMQ--SGVTGINTMRVYNPIKQSMEHDP 418 Query: 421 QGTFIRHWLPELNNVPTQYIHAPHSWL------DKNDLSLNYPLPIVDHKKACHHTLNQY 474 +GTFIR W+PEL +VP ++IH P W L +YP P+VD + Q Sbjct: 419 KGTFIRKWVPELKSVPDEFIHEPWKWEKTLIDDRDFTLGQDYPAPLVDQAVSAKAAKQQI 478 Query: 475 YAAKKQ 480 A ++ Sbjct: 479 SAIRQN 484 >gi|329941848|ref|ZP_08291113.1| deoxyribodipyrimidine photolyase [Streptomyces griseoaurantiacus M045] gi|329299565|gb|EGG43465.1| deoxyribodipyrimidine photolyase [Streptomyces griseoaurantiacus M045] Length = 468 Score = 327 bits (838), Expect = 3e-87, Method: Composition-based stats. Identities = 135/488 (27%), Positives = 213/488 (43%), Gaps = 37/488 (7%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M +V DLR+ D+ L AA + A V+ +F+ + F+ L Sbjct: 1 MHTSVVLFTADLRLHDHPPLRAALDRASA-VVPLFVRDRAVDAAGFAVPNRLAFLADCLR 59 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 + L ++G D +E + + ++ + RR+ L Sbjct: 60 DLDAGLRERGGRLVVRSG----DLVEEVCRVAAEADAGEVHMASDVSAHAHRREDRLRTA 115 Query: 127 LQHRVICKSFDDSV--LLPPGSILNHALQMYKVYTPFRKALIQNLVQADL-RSLPVPAIR 183 L+ D+V + PGS+ + V+TP+ + + ++ L VP Sbjct: 116 LEAVGRGLVVHDTVTTVRAPGSVTPGGRDHFAVFTPYFRRWSEQRTRSVLDAPRRVPVPE 175 Query: 184 LTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVY------------YYV 231 G P + D + GE+ L + + Y Sbjct: 176 GIGSEEPPDRRELSDL----SPGLARGGEREGRARLAAWLRGGSGDGKGAGVVGDVGEYE 231 Query: 232 EQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFY 291 ++ D A TS+LSP+L G LSP + + GA +++ +L WR+F+ Sbjct: 232 DRHDDLAGDATSRLSPHLHFGTLSPVEVV-------REAGGLGGPGAEAFVRQLAWRDFH 284 Query: 292 RHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHN 351 R ++A P+ +QAW++G TG+P++DAAMRQL GWMHN Sbjct: 285 RQVLAARPAAAHEDYRTRHDRWRTERAAREEVQAWREGRTGYPVVDAAMRQLRHEGWMHN 344 Query: 352 RLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNP 411 R R++TASFL K L VDWR+G +F+ L+DGDLA+N WQW A TG DS P R+ NP Sbjct: 345 RGRLLTASFLAKTLYVDWRVGARHFLDLLVDGDLANNQMNWQWVAGTGTDSRP-NRVLNP 403 Query: 412 TIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSW-LDKNDLSLNYPLPIVDHKKACHHT 470 +QG+RFDP+G ++R W+PEL VP +H P + + Y +VD + Sbjct: 404 VVQGRRFDPEGAYVRRWVPELAEVPGAGVHEPWKLRGAAREAARGYAERVVDLAEG---- 459 Query: 471 LNQYYAAK 478 L ++ A+ Sbjct: 460 LERFRRAR 467 >gi|282862663|ref|ZP_06271724.1| Deoxyribodipyrimidine photo-lyase [Streptomyces sp. ACTE] gi|282562349|gb|EFB67890.1| Deoxyribodipyrimidine photo-lyase [Streptomyces sp. ACTE] Length = 459 Score = 326 bits (837), Expect = 3e-87, Method: Composition-based stats. Identities = 131/479 (27%), Positives = 226/479 (47%), Gaps = 30/479 (6%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 MSV +V +DLR+ D+ L+AA ++D +V+ +F+ R + + F+ L Sbjct: 1 MSVAVVLFTSDLRLHDHPPLHAALASAD-EVVPLFVRDDAVARAGFCAPNREAFLADCLR 59 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 + L +G + ++ + + ++ + RR++ L + Sbjct: 60 DLDAGLRDRGGRLVIRSG----EIVDEVRRVVTETGAGEVHLAADVSGHAQRREERLREA 115 Query: 127 LQHRVICKSFDDSVL--LPPGSILNHA--LQMYKVYTPFRKALIQNLVQAD---LRSLPV 179 L D+V+ + PG+++ + V+TP+ ++ Q ++ R++ + Sbjct: 116 LASAGCRLRVHDAVVTAVAPGAVVPSGSGKDHFAVFTPYFRSWSQVGLRTPFGAPRAVRM 175 Query: 180 PAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAI 239 P + PV + A + + Y ++ D A Sbjct: 176 PDGPASEPVPERSRVSGVSRGVAEGGEREGRRRMTAWRR------QGLGRYEDRHDDLAG 229 Query: 240 QGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYP 299 TS+LSP+L G LSP + +R + +GA +++ +L WR+F+ ++A P Sbjct: 230 DATSRLSPHLHFGTLSPTELIHRAR-------SAGGAGAEAFVRQLCWRDFHHQVLAARP 282 Query: 300 SVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITAS 359 + + ++AWK+G TG+P++DAAMRQL GWMHNR R++TAS Sbjct: 283 AASHADYRTRDDRWRTERTAAGDIEAWKEGRTGYPLVDAAMRQLRHEGWMHNRGRLLTAS 342 Query: 360 FLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFD 419 FLVK L VDWRIG +F+ L+DGD+A+N WQW A TG DS P R+ NP +Q KR+D Sbjct: 343 FLVKTLYVDWRIGARHFLELLVDGDIANNQLNWQWMAGTGTDSRP-NRVLNPVVQAKRYD 401 Query: 420 PQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478 G ++R W+PEL + +H P + +L+YP P++D + L ++ A+ Sbjct: 402 TDGAYVRRWVPELEKLGAPAVHEPWRLTGRERAALDYPEPLLDLSEG----LARFKDAR 456 >gi|307611923|ref|NP_001182628.1| cryptochrome 1 [Bombyx mori] gi|306416108|gb|ADM86932.1| cryptochrome 1 [Bombyx mori] gi|306416112|gb|ADM86934.1| cryptochrome 1 [Bombyx mori] Length = 536 Score = 326 bits (837), Expect = 3e-87, Method: Composition-based stats. Identities = 110/500 (22%), Positives = 187/500 (37%), Gaps = 36/500 (7%) Query: 10 HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69 ++W R+ LR+ DN +L++A + +FI E + + ++ +L + Sbjct: 5 SVLWFRHGLRLHDNPSLHSALEETSGPFFPIFIFDGETAGTKVVGYNRMRYLLEALDDLD 64 Query: 70 KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH 129 K + G + + + KL + + E RD+ ++ + Sbjct: 65 KQFKKYGGRLLLVKGKPS----AVFRRLWEEFGIRKLCFEQDCEPVWRPRDESVKTACRE 120 Query: 130 -RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188 V C+ L P +++ + + + + + Sbjct: 121 IGVTCREHVSHTLWEPDTVIKANGGIPPLTYQMFLHTVATIGDPPRPVDNAKLRGIKFGT 180 Query: 189 TPSNIPRFFDYPFQAIDP---------------MFPIGEQNALHILRKFCKEKVY----- 228 P F + +P + GE AL ++ + Sbjct: 181 LPLCFYEEFTVYDKVPNPEDLGVFLENEDIRMIRWVGGETAALKQMQHRLAVEYETFCRG 240 Query: 229 YYVEQRDIPAIQGTS-QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIW 287 Y+ P + G LSP L G LS R+ + L++ F + +LIW Sbjct: 241 SYLPTHGSPDLLGPPISLSPALRFGCLSVRKFYWSLQDLFQQVHQGSLCSTQYITGQLIW 300 Query: 288 REFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDS-HLLQAWKQGYTGFPIIDAAMRQLNTI 346 RE++ + P P I W L+ W G TGFP +DAAMRQL Sbjct: 301 REYFYTMSVNNPHYGQMTD-NPICLDIPWKSPEGDELERWASGRTGFPFVDAAMRQLRLE 359 Query: 347 GWMHNRLRMITASFLVKD-LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDS-VP 404 GW+H+ +R ASFL + L + W G +F+ LLD D + G W W +S+ ++ + Sbjct: 360 GWLHHAVRNTVASFLTRGTLWLSWEHGLAHFLKYLLDADWSVCAGNWMWVSSSAFEALLD 419 Query: 405 YFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWL------DKNDLSLNYPL 458 P G+R DP G ++R ++PEL VPT+YI+ P + +YP Sbjct: 420 SGECACPVRLGQRLDPSGEYVRRYVPELARVPTEYIYEPWKAPLDVQERANCIIGKDYPA 479 Query: 459 PIVDHKKACHHTLNQYYAAK 478 P+V+H A N K Sbjct: 480 PVVNHIVAAQRNRNAMEDTK 499 >gi|302557422|ref|ZP_07309764.1| deoxyribodipyrimidine photolyase [Streptomyces griseoflavus Tu4000] gi|302475040|gb|EFL38133.1| deoxyribodipyrimidine photolyase [Streptomyces griseoflavus Tu4000] Length = 457 Score = 326 bits (837), Expect = 3e-87, Method: Composition-based stats. Identities = 134/477 (28%), Positives = 230/477 (48%), Gaps = 24/477 (5%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M+V +V +DLR+ D+ L+AA +D +V+ +F+ P + + F+ L Sbjct: 1 MTVAVVLFTSDLRLHDHPPLHAALRAAD-EVVPLFVLDPGIHAAGFDAPNRRAFLADCLR 59 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 + SL ++ + + + ++ RR++ L +R Sbjct: 60 DLDASLRRR----GGRLVVRAGPVAGEVCAVAAECGAAEVHMAAGVTAYAHRREERLRER 115 Query: 127 LQHRVICKSFDDSVL--LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL 184 L + D+V+ + PG++ + V+TP+ + + ++ L + A+R+ Sbjct: 116 LGDGGVALRVHDTVVTAVAPGAVTPSGSDHFAVFTPYFRRWDRERLRKPLPAP--RAVRV 173 Query: 185 TGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244 V +P D + P GE+ ++ + + Y + D A TS+ Sbjct: 174 PDGVRGRPVPERADVS-GTSPGVPPGGEKAGRDRFSRWLGDGLSRYEDLHDDLAGDATSR 232 Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304 LSPYL G LSP + +R + G +++ +L WR+F+ ++A P G Sbjct: 233 LSPYLHFGALSPVELVHRAR-------GHGGPGGDAFVRQLCWRDFHHQVLAARPEASAG 285 Query: 305 KPFIPWTEKIEWNKDS-HLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363 + + +D+ + AW++G TG+P++DAAMRQL GWMHNR R++ ASFL K Sbjct: 286 -DYRTRHDHWRGEEDAADDIAAWREGRTGYPVVDAAMRQLRHEGWMHNRARLLVASFLTK 344 Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423 L VDWRIG +F+ L+DGD+ +N WQW A TG D+ P+ R+ NP +Q KRFDP+G Sbjct: 345 TLYVDWRIGARHFLDLLVDGDVVNNQLNWQWVAGTGTDTRPH-RVLNPLVQAKRFDPEGA 403 Query: 424 FIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQ 480 ++R W+PEL +V + +H P + L YP P++D L ++ A+ + Sbjct: 404 YVRRWVPELADVDGRAVHEPWRLPEDRRAGLGYPAPLIDLADG----LARFKHARGR 456 >gi|315636258|ref|ZP_07891510.1| deoxyribodipyrimidine photolyase [Arcobacter butzleri JV22] gi|315479467|gb|EFU70148.1| deoxyribodipyrimidine photolyase [Arcobacter butzleri JV22] Length = 450 Score = 326 bits (837), Expect = 3e-87, Method: Composition-based stats. Identities = 147/469 (31%), Positives = 231/469 (49%), Gaps = 25/469 (5%) Query: 10 HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69 ++W R DLRI DN+ L A +V+ +FI + ++ FIY S+ +++ Sbjct: 3 QILWFRRDLRIIDNEILANA----KGEVLPIFIFDKNILQNLPKDDKRVTFIYKSVYKLK 58 Query: 70 KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH 129 + L G+ FD + ++ + ++ +RD+ +EK Sbjct: 59 EDLKSIGLDLAI----FFDTPKNVFTKLKKE-NFDEILVSVDFDNYAKKRDEEVEKI--- 110 Query: 130 RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189 + + F DS L+ P IL + YKV+TPF L + + Sbjct: 111 -IPLRRFLDSYLIDPKIILKSDQKPYKVFTPFYNCLEPLHQSNHIEEFKISTNIKKINYD 169 Query: 190 PSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYL 249 P D F I+ P + L +K+ Y + RD + S LS +L Sbjct: 170 YDFFPTLQDLGF--IEQKLPDFLYKSADELITIFSKKIDNYQKNRDFFHLDAGSNLSVHL 227 Query: 250 SIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIP 309 G++S + +N++K+ PK ++ ELIWREFY +++ +P Sbjct: 228 RFGLISAKIVFNKIKKLQA-----PKKEIDFFIRELIWREFYNYILFHFPKSQFENLNGI 282 Query: 310 WTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDW 369 K+ WN++ + W +G TG PIIDA+M+ LN G MHNRLRMI AS+LVK+LL+DW Sbjct: 283 ---KVNWNENEEDFKKWCEGNTGVPIIDASMKHLNNTGLMHNRLRMIVASYLVKNLLIDW 339 Query: 370 RIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWL 429 + GEEYF +LLD + +SN G WQWAASTG D+VPYFR+FNP +Q K+FD + FI+ L Sbjct: 340 KKGEEYFALKLLDYEASSNIGSWQWAASTGVDAVPYFRVFNPYLQSKKFDSEAIFIKSVL 399 Query: 430 PELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478 +L ++PT+ IH + + ++ L+YP IV + + ++ A Sbjct: 400 KDLKDIPTKQIHTENGVQE--NIFLDYPKQIVGINYSRDRAILEFKRAN 446 >gi|224051116|ref|XP_002198900.1| PREDICTED: cryptochrome 2 (photolyase-like), partial [Taeniopygia guttata] Length = 540 Score = 326 bits (837), Expect = 4e-87, Method: Composition-based stats. Identities = 109/464 (23%), Positives = 178/464 (38%), Gaps = 30/464 (6%) Query: 40 VFIATPEQWRQHGISARQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCL 99 ++I P + + F+ SL + SL + + D Sbjct: 1 IYILDPWFAATSAVGINRWRFLLQSLEDLDNSLRKLNSRLFVVRGQPTD----VFPRLFK 56 Query: 100 QQRVTKLFYNRQYEINEVRRDKLLEKRLQH-RVICKSFDDSVLLPPGSILNHAL-QMYKV 157 + VT+L + E RD + K + V + L I+ + Sbjct: 57 EWGVTRLTFEYDSEPFGKERDAAIVKLAKEAGVEVVIENSHTLYDLDRIIELNGHKPPLT 116 Query: 158 YTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPSNIP-------RFFDYPFQA---IDPM 207 Y F+ + + + S + T V + F + Sbjct: 117 YKRFQAIISRMELPKKPVSTVISQQMETCKVDIQENHDDVYGVPSLEELGFPTDGLAPAV 176 Query: 208 FPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGT----SQLSPYLSIGVLSPRQCWNRL 263 + GE AL L K + K + +R + LSPYL G LS R + RL Sbjct: 177 WQGGETEALARLDKHLERKAWVANYERPRMNANSLLASPTGLSPYLRFGCLSCRLFYYRL 236 Query: 264 KEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLL 323 E + + + + S +L+WREF+ P + P +I W+++ L Sbjct: 237 WELYKKVK-RNSTPPLSLYGQLLWREFFYTAATNNPKFDRMEG-NPICIQIPWDRNPEAL 294 Query: 324 QAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLD 382 W +G TGFP IDA M QL GW+H+ R A FL + DL + W G F LLD Sbjct: 295 AKWAEGKTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWISWESGVRVFDELLLD 354 Query: 383 GDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHA 442 D + N G W W S +F + P G+R DP G +++ +LP+L P++YI+ Sbjct: 355 ADFSVNAGSWMW-LSCSAFFQQFFHCYCPVGFGRRTDPSGDYVKRYLPKLKGFPSRYIYE 413 Query: 443 PHSWLD------KNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQ 480 P + + K + ++YP P+V+H + + + +Q Sbjct: 414 PWNAPESVQKAAKCIIGVDYPKPMVNHAETSRLNIERMKQIYQQ 457 >gi|152967497|ref|YP_001363281.1| deoxyribodipyrimidine photo-lyase [Kineococcus radiotolerans SRS30216] gi|151362014|gb|ABS05017.1| Deoxyribodipyrimidine photo-lyase [Kineococcus radiotolerans SRS30216] Length = 450 Score = 326 bits (836), Expect = 4e-87, Method: Composition-based stats. Identities = 143/471 (30%), Positives = 217/471 (46%), Gaps = 24/471 (5%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 ++W R DLR++D+ +D V+ +F+ P W + ++ SL + Sbjct: 2 TSVLWFRRDLRLSDHP--ALLAAAADGDVLPLFVIDPALWG--PSGDVRRTYLLRSLRSL 57 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128 +L +V D +D + +++ RRD + + L Sbjct: 58 DAALGGALVV-------ERGDPAVVVDRVAARIGASRVHVTADAGPLGRRRDDAVGRALA 110 Query: 129 HRV-ICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187 + PG++ + ++V+TPF +A + A S A+R G Sbjct: 111 AGGRELVRTGTPYAIGPGTLRTGSGSPFQVFTPFSRAWRAHGWPAPADSP--GAVRWVGD 168 Query: 188 VTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSP 247 + + D P + GE A +F + Y RD P GTSQLS Sbjct: 169 GEGVDGGHWPDEPDLGGLTLPEAGEDAAHERWHRFLDHALADYDGDRDRPDRDGTSQLSH 228 Query: 248 YLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPF 307 L G L PR L+ + GA ++ EL WR+FY ++ P + Sbjct: 229 ALKWGELHPRTLLAALR-------GQSSKGAETYATELCWRDFYADVLWHRPDSAREY-Y 280 Query: 308 IPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLV 367 P + + + +AW +G TGFPI+DA MRQ+ +GW+HNR+RMITASFLVKDL V Sbjct: 281 KPQLAGLRYAEPGEQFRAWAEGRTGFPIVDAGMRQMRAVGWVHNRVRMITASFLVKDLHV 340 Query: 368 DWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRH 427 +W+ G FM L D DLASN GWQW A +G D+ P+FR+FNP QG+RFDP G ++R Sbjct: 341 EWQHGGREFMHWLRDADLASNMHGWQWVAGSGTDASPFFRVFNPVTQGQRFDPDGDYVRR 400 Query: 428 WLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478 ++PEL ++P + +H P W + + YP IVDH L +Y + Sbjct: 401 FVPELRHLPGKSVHTP--WEAADGYAHGYPERIVDHAHEREVALAEYARVR 449 >gi|256789597|ref|ZP_05528028.1| deoxyribodipyrimidine photolyase [Streptomyces lividans TK24] gi|289773486|ref|ZP_06532864.1| deoxyribodipyrimidine photolyase [Streptomyces lividans TK24] gi|289703685|gb|EFD71114.1| deoxyribodipyrimidine photolyase [Streptomyces lividans TK24] Length = 458 Score = 326 bits (836), Expect = 4e-87, Method: Composition-based stats. Identities = 138/478 (28%), Positives = 221/478 (46%), Gaps = 25/478 (5%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M+ +V DLR+ D+ L AA SDA V+ +F+ + + + L Sbjct: 1 MATSVVLFTRDLRLHDHPPLRAALDRSDA-VVPLFVRDRAVGAAGFAAPNRLALLADCLR 59 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 + L +G D +E + + + ++ + RR++LL Sbjct: 60 DLDSGLRDRGGRLVVRSG----DLVEEVCAVAGEAEADEVHLAADVSAHAHRREELLRSA 115 Query: 127 LQHRVICKSFDD--SVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL 184 L R D + +L PGS+ + + V+TP+ + + V+ L + +R+ Sbjct: 116 LSARGCRLHVHDAVTTVLAPGSVTPASSDHFAVFTPYFRRWSERAVREPLAAP--RRVRV 173 Query: 185 TGPVTPSNIPRFFDYPFQAIDPMFP-IGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS 243 V +P D + P P GE++A L + + + Y + D A TS Sbjct: 174 PDGVGSEPLPARGDL--TGLSPGLPTGGERDARKRLTAWLRGGIAGYADHHDDLAGDATS 231 Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCM 303 +LSP L +G LSP + +R + GA +++ +L WR+F+ ++A P Sbjct: 232 RLSPDLHLGALSPVELVHRARRA-------GGPGAEAFVRQLAWRDFHHQVLAARPHASA 284 Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363 AW+ G TG+P++DAAMRQL GWMHNR R++ ASFL K Sbjct: 285 ADYRTRHDRWRTGAAAEADAAAWRDGRTGYPVVDAAMRQLRHEGWMHNRGRLLVASFLTK 344 Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423 L VDWR+G +F+ L+DGD+A+N WQW A TG D+ P+ R+ NPT Q +RFDP G Sbjct: 345 TLYVDWRVGARHFLELLVDGDVANNQLNWQWVAGTGTDTRPH-RVLNPTTQARRFDPGGA 403 Query: 424 FIRHWLPELNNVPTQYIHAPHSW-LDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQ 480 ++R W+PEL + + +H P YP PIVD + L+++ A+ + Sbjct: 404 YVRRWVPELAGLAGRSVHEPWRLARAARAAYDAYPDPIVDLSEG----LDRFRRARGR 457 >gi|254501390|ref|ZP_05113541.1| deoxyribodipyrimidine photolyase family [Labrenzia alexandrii DFL-11] gi|222437461|gb|EEE44140.1| deoxyribodipyrimidine photolyase family [Labrenzia alexandrii DFL-11] Length = 519 Score = 326 bits (835), Expect = 5e-87, Method: Composition-based stats. Identities = 109/487 (22%), Positives = 188/487 (38%), Gaps = 33/487 (6%) Query: 6 AMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASL 65 + +H+VW + DLR+ D++ L A V+ +++ P+ W Q +SAR F+ L Sbjct: 2 SEPIHIVWFKKDLRVFDHEPLKRASL--QGPVLPLYVIEPDLWDQPDMSARHYAFLSECL 59 Query: 66 LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYE-INEVRRDKLLE 124 + + LS+ G S D L + R+ L+ + + +RDK + Sbjct: 60 QDLDQELSRLGKPLLLRTGSVTD----VLTYISERYRIAGLWSHEETGNGWTYQRDKAVA 115 Query: 125 KRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL 184 + + + ++ + + + + + PA+R Sbjct: 116 AWCRANSVPWTECRQT-----GVIRRLNSRNGWAGQWDRFMAEQPID-------PPALRP 163 Query: 185 TGPVTPSNIPRFFDYPF--QAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIP--AIQ 240 +T +P+ D G AL L F + Y P A + Sbjct: 164 LSGLTSGPLPKAADLGLAADPCPDRQIGGRVAALETLESFLFTRGKPYRAAMATPVKAFE 223 Query: 241 GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLN-------ELIWREFYRH 293 S++SPYL+ G +S R+ +L G +W L W + Sbjct: 224 ACSRMSPYLTFGTISMREVAQATWARQAELKRSDFKGRSTWQGAMRSFSGRLHWHCHFMQ 283 Query: 294 LMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRL 353 + P + + D+ LQAW++G TG P +DA MR L GWM+ R+ Sbjct: 284 KLEDEPRLEFENLHRAYDGLRPSTPDAERLQAWQRGETGLPFVDACMRALTATGWMNFRM 343 Query: 354 RMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTI 413 R + + L +DWR + D + + Q +G + RI+NP Sbjct: 344 RAMLTAVASYHLWLDWRQPGLHLARLFTDYEPGIHWSQIQMQ--SGTTGINTIRIYNPVK 401 Query: 414 QGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND-LSLNYPLPIVDHKKACHHTLN 472 QGK DP G F++ W+PEL ++ I+ P + L YP P+VD+ A + Sbjct: 402 QGKDQDPDGIFVKRWVPELKDIDPALINEPWKAENAGKVLGKTYPFPVVDYLSAAKEARD 461 Query: 473 QYYAAKK 479 + +A +K Sbjct: 462 KVWAVRK 468 >gi|308178900|ref|YP_003918306.1| deoxyribodipyrimidine photo-lyase [Arthrobacter arilaitensis Re117] gi|307746363|emb|CBT77335.1| deoxyribodipyrimidine photo-lyase [Arthrobacter arilaitensis Re117] Length = 464 Score = 326 bits (835), Expect = 6e-87, Method: Composition-based stats. Identities = 141/488 (28%), Positives = 215/488 (44%), Gaps = 45/488 (9%) Query: 4 TTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYA 63 + + + L+W R+DLR DN AL +A VIAVFI + + +++ Sbjct: 3 QSPLPLQLMWFRDDLRTADNPALSSALAAG--PVIAVFILDQQSPGIRPLGGAAKWWLHH 60 Query: 64 SLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLL 123 L ++ +L GI + + + Q + +NR+Y E D Sbjct: 61 GLKSLRAALEDLGIPLVLRKGP----ADSIMTELARQTNAQAVHWNRRYGQPERAVDTRA 116 Query: 124 EKRLQHRV-ICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLR-SLPVPA 181 + L+ +S+ ++L P +L YKV+TPF AL + ++ L L Sbjct: 117 KTALRGLGREARSYPGTLLHEPWELLTKKGTGYKVFTPFYNALGDSAIRPPLPAPLGQDT 176 Query: 182 IRLTGPVTPSNIPRFFDYPFQA-----IDPMFPIGEQNALHILRKFCKEKVYYYVEQRDI 236 G + P A + + GE A H L + Y E D Sbjct: 177 FSAAGIPNGLELEDLELLPATAQWTAGLAAQWEPGEAPARHRLENVLESIAQDYPEHHDR 236 Query: 237 PAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMA 296 P + GTS LSP L G L + W+ L + K +GA + +L WR+F HL Sbjct: 237 PDLDGTSALSPALRWGHLGAHEMWDALGRLAAE-NPKAGAGATAMRRQLAWRDFCWHLYY 295 Query: 297 FYPSVCMGKPFIPWTEKIEWNKDSH------LLQAWKQGYTGFPIIDAAMRQLNTIGWMH 350 +P + + + +W +Q W++G TGF ++DA M+QL GWMH Sbjct: 296 HHPQLP-DRNLRTDFDHFDWVWPEQDQQVASYVQLWQKGRTGFGLVDAGMQQLWQTGWMH 354 Query: 351 NRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFN 410 NR+RM+ AS LVK+L V W++GE +F L+D D+ASN WQW A +G D+ PYFR+FN Sbjct: 355 NRVRMVAASLLVKNLQVHWKVGERWFWDTLVDADIASNTANWQWVAGSGADAAPYFRVFN 414 Query: 411 PTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHT 470 P +Q K+FDPQG+++ + P PIVD K++ Sbjct: 415 PELQAKKFDPQGSYVSQFAPLAA------------------------QPIVDLKQSRLDA 450 Query: 471 LNQYYAAK 478 L+ Y K Sbjct: 451 LDAYDQMK 458 >gi|326387639|ref|ZP_08209245.1| deoxyribodipyrimidine photo-lyase type I [Novosphingobium nitrogenifigens DSM 19370] gi|326207685|gb|EGD58496.1| deoxyribodipyrimidine photo-lyase type I [Novosphingobium nitrogenifigens DSM 19370] Length = 455 Score = 326 bits (835), Expect = 6e-87, Method: Composition-based stats. Identities = 140/464 (30%), Positives = 214/464 (46%), Gaps = 38/464 (8%) Query: 8 SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67 + LVWLR DLR+ ++ V+ V++ E R + +++ SL Sbjct: 3 APVLVWLRQDLRLA--DQAAFLAAAAEGPVVPVYVLDDETPRHRRMGGASRWWLHHSLKS 60 Query: 68 VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127 + + L Q+G + + L + ++ E ++ + K L Sbjct: 61 LDEGLRQRGSRLILRRGP----AHRELAELAREVGARRVHALAHVEPWWRNAERAVAKTL 116 Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187 + L PPG++L + YK+YTPF +AL + + P R+ P Sbjct: 117 D----LVLHEGQYLAPPGTVLTGSGLPYKIYTPFWRALSERMPTHRPVPAPG---RIDAP 169 Query: 188 VTPSNIPRFFDYPFQAIDP--------MFPIGEQNALHILRKFCKEKVYYYVEQRDIPAI 239 + + R D+ P + GE A L F K Y E R+ P++ Sbjct: 170 ASWPDGDRLDDWTLVPTRPDWAAGFRTRWTPGEVGAHERLDMFI-GKASRYGEWRNFPSV 228 Query: 240 QGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYP 299 +GTS+LSP+L G +S W+ + + ++L E+ WR++ +++ P Sbjct: 229 EGTSRLSPHLHFGEISAATVWHSVAD--------AGGSVSTFLGEVGWRDYAANVLLQMP 280 Query: 300 SVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITAS 359 G+ E+ W +D+ L+AW+ G TG+PI+DA MR+L GWMHNR+RMI AS Sbjct: 281 DYA-GRSAREAFERFPWREDADDLRAWQTGMTGYPIVDAGMRELWATGWMHNRVRMIAAS 339 Query: 360 FLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFD 419 FLVK LL+DWR GE +F L+D D A N WQW A TG DS + RI P Q +FD Sbjct: 340 FLVKHLLIDWREGERWFWDTLVDADHAINAVNWQWTAGTGVDSNMFVRIMAPLTQSPKFD 399 Query: 420 PQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDH 463 G +IR W+PEL++V IH P YP P++DH Sbjct: 400 AAG-YIRRWVPELSDVADADIHDPR------IRPRGYPAPLIDH 436 >gi|296128975|ref|YP_003636225.1| Deoxyribodipyrimidine photo-lyase [Cellulomonas flavigena DSM 20109] gi|296020790|gb|ADG74026.1| Deoxyribodipyrimidine photo-lyase [Cellulomonas flavigena DSM 20109] Length = 457 Score = 326 bits (835), Expect = 6e-87, Method: Composition-based stats. Identities = 141/471 (29%), Positives = 214/471 (45%), Gaps = 29/471 (6%) Query: 9 VHLVWLRNDLRITDNKALYAACHNS---DAKVIAVFIATPEQWRQHGISARQSHFIYASL 65 + W R DLR++D+ AL AA + +V+A+++ P WR G + ++ ASL Sbjct: 2 PTICWFRRDLRLSDHPALVAAVAEARAAGDEVVALYVVDPALWRAAGTP--RLAYLAASL 59 Query: 66 LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125 + ++ + +V + + + Q + + + E RRD+ +E Sbjct: 60 RSLDEATGGRLVVRHGR-------ADRVVPAVARQVGASSVHVSAATEPYGRRRDEAVEA 112 Query: 126 RLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQN-LVQADLRSLPVPAIRL 184 L V + PG + Y+V+TPFR A + + + R VP L Sbjct: 113 ALD--VPLVRTGCPYAVAPGRLRTGQGGPYQVFTPFRGAWLDHGWHEPAPRPRDVPWAAL 170 Query: 185 TGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244 P P P GE+ A F +E + Y R+ P + TS Sbjct: 171 ASDGLPDAPATDVTLP--------PAGERAARERWHAFVREDLAGYDVDRNRPDLDVTSW 222 Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304 +S +L G + PR L + ++ +EL WREF+ ++ +P+ Sbjct: 223 MSVHLKHGEIHPRTLLADLADAGRGARGPLADSVATYRSELAWREFHADVLWHHPAAART 282 Query: 305 KPFIPWTEKIEWNKDS---HLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFL 361 + W AW G TG+P++DA MRQL GW+HNR+RM+ ASFL Sbjct: 283 -SLREVVPQDAWATGPPADRAFAAWTDGRTGYPLVDAGMRQLRAQGWVHNRVRMVVASFL 341 Query: 362 VKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQ 421 VKDL + W+ G +FM L+DGD+ N WQW A TG D+ PYFR+FNP Q ++FDP Sbjct: 342 VKDLHLPWQRGAAHFMEWLVDGDVPQNQLNWQWVAGTGRDAAPYFRVFNPVTQARKFDPD 401 Query: 422 GTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLN 472 GT++R W+PEL +VP + +H P W L YP +VDH L Sbjct: 402 GTYVRRWVPELRDVPDRAVHEP--WTLPGGLPAGYPERVVDHAHEREVALA 450 >gi|167521638|ref|XP_001745157.1| hypothetical protein [Monosiga brevicollis MX1] gi|163776115|gb|EDQ89735.1| predicted protein [Monosiga brevicollis MX1] Length = 525 Score = 326 bits (835), Expect = 6e-87, Method: Composition-based stats. Identities = 130/492 (26%), Positives = 209/492 (42%), Gaps = 40/492 (8%) Query: 1 MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQW------------ 48 M +VW RNDLR+ DN+ L A S V+ V+ Q+ Sbjct: 1 MAKAGNPRPVVVWFRNDLRVHDNEVLLQAAKASHNHVVPVYCFDIRQYSLVITHRSRRCG 60 Query: 49 RQHGISARQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFY 108 + ++ F+ S+ ++ L + G E + Q T++F Sbjct: 61 QFPKCGRPRARFLIESVDDLRTRLQELGSGLVVRTGLPE----EEVARVAAQVGATQVFA 116 Query: 109 NRQYEINEVRRDKLLEKRLQHRVICKSFDDSVLLPPGSILN---HALQMYKVYTPFRKAL 165 +++ EV + L+++L+ V +V L L+ + V+T FRK + Sbjct: 117 HQEVCSEEVAAEHRLKRQLE--VPLSLHWGAVTLCHLDDLDFGPRCKHLPSVFTQFRKRV 174 Query: 166 IQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDY------PFQAIDPMFPIGEQNALHIL 219 ++ + + P L + +IP D P + F GE A L Sbjct: 175 EADMHVRPVVAAPARLAPLPSDLELGSIPTVEDLCPGQHEPDERAVLPFKGGETAARARL 234 Query: 220 RKFCKEKV--YYYVEQRD-IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKS 276 + + E Y + R+ + +S+ SP+L+ G L+ R ++ +K + + Sbjct: 235 QYYLWESNLLASYKDTRNGLVGGDYSSKFSPWLAHGNLTARWIYHEVKRYEQERT--ENT 292 Query: 277 GAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPII 336 + + EL+WR+++R + + + KP + + W +AW+ G TGFP I Sbjct: 293 STYWLIFELLWRDYFRFVALQHGTAIF-KPGGVQHKDVPWRHSPADFEAWQNGQTGFPFI 351 Query: 337 DAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAA 396 DA MR+L G+M NR R ASFL KDL +DWR+G E+F + LLD D SN G W +AA Sbjct: 352 DANMRELAKTGFMSNRGRQNVASFLTKDLQIDWRLGAEWFETLLLDHDPCSNYGNWNYAA 411 Query: 397 STGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKN------ 450 GND R FN Q K +DP ++ W+PEL + H P + Sbjct: 412 GVGNDPRQ-GRHFNVIKQAKTYDPTAEYVHLWVPELRGLDAPQAHVPFKLSSEELAQANI 470 Query: 451 DLSLNYPLPIVD 462 L YP P+VD Sbjct: 471 QLGSTYPRPVVD 482 >gi|13022111|gb|AAK11644.1|AF333998_1 cryptochrome [Antheraea pernyi] Length = 525 Score = 326 bits (835), Expect = 7e-87, Method: Composition-based stats. Identities = 111/501 (22%), Positives = 192/501 (38%), Gaps = 36/501 (7%) Query: 10 HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69 ++W R+ LR+ DN +L+AA + +F+ E + + ++ +L + Sbjct: 5 SVLWFRHGLRLHDNPSLHAALEDRSVPFFPIFVFDGETAGTKLVGYNRMRYLLEALEDLD 64 Query: 70 KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH 129 + G + D + + KL + + E RD ++ + Sbjct: 65 NQFKKYGGKLIMLKGKPSD----VFRRLWEEFGIRKLCFEQDCEPLWRARDDGVKSACRE 120 Query: 130 -RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188 V C+ + L P +++ + + + + V +T Sbjct: 121 IGVACREYVSHTLWEPDTVIRANGGIPPLTYQMFLHTVTIVGDPPRPVPDVDMSGITFGT 180 Query: 189 TPSNIPRFFDYPFQAIDP---------------MFPIGEQNALHILRKFCKEKVY----- 228 P + F + P + GE AL +++ + Sbjct: 181 LPDCFYQEFTVFDKTPKPEDLGVFLENEDIRMIRWVGGETAALKQMQQRLAVEHETFRKG 240 Query: 229 YYVEQRDIPAIQGTS-QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIW 287 Y+ P + G LSP L G LS R + +++ F + S A +LIW Sbjct: 241 SYLPTHGSPDLLGPPISLSPALRFGCLSVRSFYWSVQDLFRQVHQGRLSSAHFITGQLIW 300 Query: 288 REFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDS-HLLQAWKQGYTGFPIIDAAMRQLNTI 346 RE++ + P+ P I W LQ W +G TGFP IDAAMRQL Sbjct: 301 REYFYTMSVNNPNYG-QMADNPICLDIPWKHPEGDELQRWIEGRTGFPFIDAAMRQLRAE 359 Query: 347 GWMHNRLRMITASFLVKD-LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDS-VP 404 GW+H+ +R ASFL + L + W G +F+ LLD D + G W W +S+ ++ + Sbjct: 360 GWLHHAVRNTVASFLTRGTLWLSWEHGLNHFLKYLLDADWSVCAGNWMWVSSSAFEALLD 419 Query: 405 YFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWL------DKNDLSLNYPL 458 P G+R DP G ++R ++PE+ +P YI+ P + +YP Sbjct: 420 SGECACPVRLGQRLDPSGEYVRRYVPEIARMPVDYIYEPWKAPLDVQTRASCIIGKHYPA 479 Query: 459 PIVDHKKACHHTLNQYYAAKK 479 P+V+H A N ++ Sbjct: 480 PLVNHIVAAQRNRNAMKELRQ 500 >gi|295840351|ref|ZP_06827284.1| deoxyribodipyrimidine photolyase [Streptomyces sp. SPB74] gi|295827937|gb|EFG65724.1| deoxyribodipyrimidine photolyase [Streptomyces sp. SPB74] Length = 455 Score = 325 bits (834), Expect = 7e-87, Method: Composition-based stats. Identities = 128/470 (27%), Positives = 213/470 (45%), Gaps = 22/470 (4%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M +V +DLR+ D+ L AA ++ +V+ +F+ P + + ++ F+ L Sbjct: 1 MKASIVLYTSDLRLHDHPPLRAATREAE-EVVPLFVRDPGIEKAGFTAPNRAAFLADCLA 59 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 + L ++G D + + ++ R L Sbjct: 60 GLDAGLRERGGRLVVR----AGDPVRIVRELVGSTGAERVHVAAGLSAYARGRADRLRTA 115 Query: 127 LQHRVICKSFDDSVL--LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL 184 L+ ++V+ L PG ++ + V+TP+ + ++ L + A+ + Sbjct: 116 LEGTGAELVEHEAVVTALQPGELVPGGKDHFAVFTPYHRQWSAQPLREPLAAP--RALTV 173 Query: 185 TGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244 V +PR D + GE +L + ++ V Y E D A GTS+ Sbjct: 174 PSGVRSDAVPRRADVE-GVSPGLAEGGEAAGRALLAAWRRDGVSRYEEMHDDLAGDGTSR 232 Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304 LSPYL G LS +C +R++ +++ +L WR+F+ ++A P+ Sbjct: 233 LSPYLHFGALSAAECVHRVRAAGGAGAD-------AFVRQLCWRDFHHQVLAARPAAA-H 284 Query: 305 KPFIPWTEKIEW-NKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363 K + P + AW++G TG+P++DAAMRQL GWMHNR R++ ASFL K Sbjct: 285 KDYRPRGDHWRTGRSAEREAAAWREGRTGYPVVDAAMRQLAHEGWMHNRGRLLAASFLTK 344 Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423 L +DWR+G +F+ L DGDLA+N WQW A TG D+ P R+ NP Q +++DP+G Sbjct: 345 TLYLDWRLGAAHFLDLLADGDLANNQMNWQWVAGTGTDTRP-GRVLNPLTQARKYDPEGD 403 Query: 424 FIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQ 473 ++R W+PEL + + +H P W YP P+VD + Sbjct: 404 YVRRWVPELRGIEGRAVHEP--WKRPAGEREGYPRPLVDLAEGRDRFRRA 451 >gi|255084421|ref|XP_002508785.1| predicted protein [Micromonas sp. RCC299] gi|226524062|gb|ACO70043.1| predicted protein [Micromonas sp. RCC299] Length = 566 Score = 325 bits (834), Expect = 9e-87, Method: Composition-based stats. Identities = 143/550 (26%), Positives = 205/550 (37%), Gaps = 82/550 (14%) Query: 6 AMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASL 65 A ++W R LR+ DN AL AC + A V VF+ P + + A + F+ SL Sbjct: 2 AAKRTILWFRKGLRVHDNPALVKACEGASA-VQPVFVLDPWFIKPERVGANRLRFLLESL 60 Query: 66 LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125 + SL +G L+++ R +L Y E +RD + + Sbjct: 61 TDLDASLRARGSSLLVLHGDPARVIPAALEAW----RCDRLCYEFDTEPYAQKRDASVNE 116 Query: 126 RLQH-RVICKSFDDSVLLPPGSILNH--ALQMYKVYTPFRKALIQNLVQADLRSLPVPAI 182 + V + L +L + Y F K + Sbjct: 117 AARALGVEVHAPVSHTLWDLDRLLAKCPRGEPPTAYASFLKIAHGVGPVPPVAPDVPSIT 176 Query: 183 RLTGP----------------VTPSNIPRFFDYPFQAIDPM--FP--IGEQNALHILRKF 222 L+ VT S IP ++ I FP GE L LRK Sbjct: 177 PLSDGDALSDGKDLVDALRDVVTGSGIPSLERLGYEPIKAGEGFPARGGETEGLARLRKM 236 Query: 223 CKEKVY--YYVEQRDIPA------------------------------------------ 238 Y + + + P Sbjct: 237 LARTTYIAEFKKPQTNPTELWTPVLGKEGKVKGAPPANPFEAAKKSSKEPKSTQLAEAFM 296 Query: 239 IQGTSQLSPYLSIGVLSPRQCWNRLKEEF-VDLLIKPKSGAFSWLNELIWREFYRHLMAF 297 T+ LSPYL G +SPR W+ L+ V+L K S +L+WREFY Sbjct: 297 APATTALSPYLKFGCVSPRTFWHELRAVLDVELGGKHSKPPESLEGQLLWREFYYLAGYG 356 Query: 298 YPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMIT 357 P+ +I W D L AW++ TGFP IDA M QL GWMH+ R Sbjct: 357 TPNYDRM-AGNRICRQIPWTWDEERLAAWEESRTGFPWIDACMMQLKQEGWMHHLARHAV 415 Query: 358 ASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGK 416 A FL + DL V W G F +L+D D A NNG W W S YFR++ P GK Sbjct: 416 ACFLTRGDLFVHWEAGAAVFDRELVDADWALNNGNWMW-LSCSCFFYQYFRVYGPVSFGK 474 Query: 417 RFDPQGTFIRHWLPELNNVPTQYIHAPHSWL------DKNDLSLNYPLPIVDHKKACHHT 470 ++D +G +IR +LP+L ++P +YI+ P + + ++YP PIVDH A Sbjct: 475 KYDKEGAYIRKYLPQLKDMPAKYIYEPWTAPIEVQRKAGCVVGVDYPAPIVDHAVASKEC 534 Query: 471 LNQYYAAKKQ 480 + + AA Sbjct: 535 IEKIAAAYNA 544 >gi|119476980|ref|ZP_01617261.1| deoxyribodipyrimidine photolyase [marine gamma proteobacterium HTCC2143] gi|119449787|gb|EAW31024.1| deoxyribodipyrimidine photolyase [marine gamma proteobacterium HTCC2143] Length = 528 Score = 325 bits (834), Expect = 9e-87, Method: Composition-based stats. Identities = 106/494 (21%), Positives = 193/494 (39%), Gaps = 29/494 (5%) Query: 3 ATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIY 62 + ++++VW + DLRI D+ L AA S ++ +++ P+ W++ S R HFI+ Sbjct: 18 SDVKETINVVWFKRDLRINDHGPLLAASKLS-LPILPLYVVEPDYWKKSFSSRRHWHFIH 76 Query: 63 ASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYE-INEVRRDK 121 L + ++S G D +++ V ++ + + + +RD Sbjct: 77 DCLTDLNTAVSSLGQPLVIK----VGDVCAAIENIHSDYNVQGIYAHEETGNLWTYQRDI 132 Query: 122 LLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPA 181 + K + I P ++ K +++ + + P+ Sbjct: 133 NVRKICELNNIPIHE-----YPLNGVVRKLASRNDWSVIRTKRMVEKIREKPKELKPLQR 187 Query: 182 IRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ- 240 + + + + + G A+ LR F + Y+ P + Sbjct: 188 YISDKLPPKDDPM----FGEEFVGTVQNGGRNAAVDDLRGFLNHRSSGYLRHISGPRLSA 243 Query: 241 -GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPK----SGAFSWLNELIWREFYRHLM 295 S+LS +L+ G LS R+ +K+ L K ++ + L WR + + Sbjct: 244 VYCSRLSAHLAWGSLSVREVVQSVKKRQQQLNTDDKKRFGRNLTAFNSRLAWRCHFIQKI 303 Query: 296 AFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRM 355 PS+ + E + + QAW G+TG+P IDA MR L GW+ R+R Sbjct: 304 EDQPSIETHCMHPAFEGLRENDHNEERYQAWATGHTGYPFIDACMRNLIADGWITFRMRA 363 Query: 356 ITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQG 415 + SF L +DWR+ ++ D + + Q +G + R++NP Q Sbjct: 364 MLVSFASYQLWLDWRVIGDHLARLFTDFEPGIHYSQLQMQ--SGVTGINAMRVYNPVKQS 421 Query: 416 KRFDPQGTFIRHWLPELNNVPTQYIHAPHSWL------DKNDLSLNYPLPIVDHKKACHH 469 DP G +IR W+PEL ++P ++IH P +W L Y PIVD+ A Sbjct: 422 IEHDPNGDYIRKWVPELADLPIEFIHEPWTWGKNLIDDASCILGTVYSEPIVDNASAAKD 481 Query: 470 TLNQYYAAKKQSLL 483 + +K Sbjct: 482 AKEKLAEIQKSEQF 495 >gi|38232742|ref|NP_938509.1| putative riboflavin biosynthesis protein [Corynebacterium diphtheriae NCTC 13129] gi|38199000|emb|CAE48617.1| Putative riboflavin biosynthesis protein [Corynebacterium diphtheriae] Length = 446 Score = 325 bits (833), Expect = 9e-87, Method: Composition-based stats. Identities = 148/481 (30%), Positives = 215/481 (44%), Gaps = 52/481 (10%) Query: 11 LVWLRNDLRITDNKALYAA---CHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67 +VW R+DLR+ DN AL A + A + AV+IA + + +++ SLL Sbjct: 6 VVWFRDDLRVHDNPALMKAWELVRANPADLHAVYIAN--EVGVRPLGGAVKWWLHHSLLA 63 Query: 68 VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKL-LEKR 126 + + L+Q+G+ D + L T + NR+Y+ D + Sbjct: 64 LSEQLAQRGVRLHVLSG----DPLTLLPQLVTSCGATAVTMNRRYDPAARSIDDAFVADA 119 Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 H V F +L PG I YKV+TPF + L + L +L P Sbjct: 120 SAHDVEVYDFPCHLLAEPGEITTTTGGSYKVFTPFSRNLRDAIGDLPLDTLAAPPKAEQP 179 Query: 187 PVTPSNIPRFFDYPFQA-----IDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQG 241 D + A I + GE A L + + + Y++ RD P I G Sbjct: 180 IDDTETQAAIADLGWDAWWAASISKAWTPGEPAAREALAE-LDDILPRYLDDRDRPDIDG 238 Query: 242 TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSV 301 TS+LSP L G LS + WN + + +L+WR+F H + +P + Sbjct: 239 TSRLSPRLRFGELSVAEVWNHAH------------TSEGFRRQLMWRDFAWHRLDAHPDM 286 Query: 302 CMGKPFIPWTEKIEWN--KDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITAS 359 P + W+ L AW+ G TG ++DA MR+L G MHNR+RM+ AS Sbjct: 287 ATAN-IRPEFDHFPWDGGDFEAELNAWRHGRTGIALVDAGMRELWATGTMHNRVRMVAAS 345 Query: 360 FLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFD 419 LVK+L + WR GE++F L+D D ASN WQW A +G+D+ PYFRIFNP Q +RFD Sbjct: 346 LLVKNLGIHWRHGEQWFWDTLVDADPASNPFNWQWVAGSGDDAAPYFRIFNPDTQARRFD 405 Query: 420 PQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYP-LPIVDHKKACHHTLNQYYAAK 478 P GT+ WLP +S +YP IVD K++ L+ Y A K Sbjct: 406 PDGTYRTRWLP--------------------IMSADYPEEAIVDLKESRLRALDAYNACK 445 Query: 479 K 479 + Sbjct: 446 R 446 >gi|193702257|ref|XP_001946012.1| PREDICTED: cryptochrome-1-like [Acyrthosiphon pisum] Length = 535 Score = 325 bits (833), Expect = 1e-86, Method: Composition-based stats. Identities = 124/510 (24%), Positives = 208/510 (40%), Gaps = 40/510 (7%) Query: 3 ATTAMSVHLVWLRNDLRITDNKALYAACHNSDA-----KVIAVFIATPEQWRQHGISARQ 57 A + W R +R+ DN A +C ++ K+ ++I P + A + Sbjct: 6 ADVGRETTVHWFRKGMRLHDNPAFKLSCEAKNSNGERYKLRPIYILDPYFRKYIRAGANR 65 Query: 58 SHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEV 117 F+ SL+ + +L + G + E + V L + E Sbjct: 66 WRFLQQSLVDLDTTLRKLGTRLYVIRGLPH----EVFPDLFAKWNVKLLTFELDTEPYAR 121 Query: 118 RRDKLLEKRL-QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRS 176 RD +E+ +H V + + +L + +++ ++ R Sbjct: 122 ERDNQVEQLARKHGVKVEQKVSHTIYNTELVLRANGGSVPMTYQKFVSVVGSM-PTPRRP 180 Query: 177 LPVPAIRLTGPVTPSNIPR-FFDYP-------FQAIDP------MFPIGEQNALHILRKF 222 +P P + + + ++ FD P + +P ++P GE+ AL L ++ Sbjct: 181 IPAPDMLPSECLLDDDLNNPEFDVPTLDELLTLKGFNPAELKPCLYPGGEKEALRRLEEY 240 Query: 223 CKEKVY--YYVEQRDIPAI--QGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGA 278 K K + + + P T+ LSPY+ G LS + RLKE + Sbjct: 241 MKNKTWVCKFEKPNTSPNSLKPSTTVLSPYMKFGCLSASHFYYRLKEVIGN--SPHSKPP 298 Query: 279 FSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDA 338 S + +L WREFY + A P+ ++ W+ + L+AW G TG+P IDA Sbjct: 299 VSLIGQLYWREFYYTVGASTPNFDKMVGNSICC-QVPWDNNPDALEAWTNGKTGYPFIDA 357 Query: 339 AMRQLNTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAAS 397 MRQL GW+H+ R A FL + DL + W G F LLD D + N G W W S Sbjct: 358 IMRQLRDEGWIHHLARHAVACFLTRGDLWISWEKGLAVFEELLLDADWSMNAGNWMW-LS 416 Query: 398 TGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDK------ND 451 +FR+++P GK+ D G +IR ++PEL P QYI+ P S Sbjct: 417 ASAFFHQFFRVYSPVAFGKKTDKSGDYIRKYIPELAKYPDQYIYEPWSAPKSIQERAGCV 476 Query: 452 LSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481 + ++YP +V H+ + + + A K + Sbjct: 477 VGVHYPKRVVVHEDVYKNNIAKMSLAYKST 506 >gi|298708156|emb|CBJ30497.1| cryptochrome 1 [Ectocarpus siliculosus] Length = 542 Score = 325 bits (833), Expect = 1e-86, Method: Composition-based stats. Identities = 131/501 (26%), Positives = 197/501 (39%), Gaps = 34/501 (6%) Query: 3 ATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHG-ISARQSHFI 61 +++ + W R LR+ DN+AL AC N A + +F+ + ++ F+ Sbjct: 2 SSSKEPSSIHWFRKGLRLHDNRALLEAC-NGTASLYPLFVLDSDPASPESRAGPLRTAFL 60 Query: 62 YASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDK 121 SL + + L KG + E L + V KL + E RD+ Sbjct: 61 LESLQDLDEQLRAKGSRLFVVRGKPE----EVLPQLFEEWNVKKLTFEADSEPRSRARDR 116 Query: 122 LLEKRLQHRVICKSFDDSVLLPPGS-----ILNHALQMYKVYTPFRKALIQNLVQADLRS 176 + + + + L + K Y F K D Sbjct: 117 EVGSLAKEAGVQVLIRGTSTLRNLQNYHMLMGKKQGTYLKTYGAFLKLHDNAGPVPDCAP 176 Query: 177 -----LPVP-AIRLTGPVTPSNIPRFFDYPFQAIDPM--FPIGEQNALHILRKFC--KEK 226 LP P A +IP D + + F GE+ AL L + ++ Sbjct: 177 DISGDLPAPGASPDDAEYDRFSIPSLSDLGVEPLAKALKFRGGEREALARLERVMAREDW 236 Query: 227 VYYYVEQRDIPA--IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNE 284 + + + + P T+ LS Y+S G LS R+ W+ L + + S + Sbjct: 237 ISKFEKPKTSPNSIEPSTTVLSMYISHGCLSTRRFWHALCKVYTKKG--GSKPPVSLKGQ 294 Query: 285 LIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLN 344 L+W+EF PS P +I W+KD L AWK+ TGFP IDAAM QL Sbjct: 295 LLWKEFNYFSGYSIPSFDKM-VGNPVIRQIPWDKDEEKLMAWKEARTGFPWIDAAMTQLK 353 Query: 345 TIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSV 403 GW+H+ R A FL + DL W G F LLD D + NN WQW S Sbjct: 354 DEGWIHHLARHAVACFLTRGDLWQSWEDGAAVFDELLLDADWSINNFNWQW-LSCSAFFY 412 Query: 404 PYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDK------NDLSLNYP 457 YFR ++P GK+ D G +I+ +LP L P++YI+ P + + + +YP Sbjct: 413 QYFRCYSPIAFGKKTDQNGDYIKKYLPALRKFPSKYIYEPWTAPLQVQRGCGCIIGKDYP 472 Query: 458 LPIVDHKKACHHTLNQYYAAK 478 PIVDH + + A Sbjct: 473 KPIVDHADTSKANMAKMNDAY 493 >gi|307944813|ref|ZP_07660151.1| deoxyribodipyrimidine photo-lyase [Roseibium sp. TrichSKD4] gi|307772027|gb|EFO31250.1| deoxyribodipyrimidine photo-lyase [Roseibium sp. TrichSKD4] Length = 527 Score = 325 bits (833), Expect = 1e-86, Method: Composition-based stats. Identities = 114/494 (23%), Positives = 179/494 (36%), Gaps = 31/494 (6%) Query: 1 MKATTAM--SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQS 58 M + M V +VW + DLR D+ L A V+ +++ P+ W Q +S R Sbjct: 1 MGDRSNMRAPVQIVWFKKDLRTYDHAPLLKAAQAG--PVLPLYVIEPKLWMQPDMSGRHF 58 Query: 59 HFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYE-INEV 117 F+ SL+ ++ L G+ DD I L + + L+ + + Sbjct: 59 AFLKESLVDLRDDLQGLGVRLVLK----VDDIIHVLTDLKSRHAIAALWSHEETGNGWTF 114 Query: 118 RRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSL 177 RDK + + + ++ + ++ + Sbjct: 115 ARDKRVSAWCRASGVHWHELRQT-----GVVRRLKGRTGWARQW-----DTVMGDPIAHR 164 Query: 178 PVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIP 237 P + P P G Q AL L F + Y P Sbjct: 165 PQNIAAVLEPSDPFPSQHELGLNPDPCPYRQTGGRQAALATLDSFLTRRGRPYQCAMSSP 224 Query: 238 --AIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLN-------ELIWR 288 A S+LSP+++ G LS R+ + L P G SW + L W Sbjct: 225 VTAFDACSRLSPHIAFGTLSLREITQATYDRQRHLKTNPLPGDRSWRSAMRSFSGRLHWH 284 Query: 289 EFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGW 348 + + P + + D L QAWK G TG P +DA MR L+ GW Sbjct: 285 CHFMQKLEDEPRLEFENLHQAYDGLRPSVPDETLFQAWKAGETGLPFVDACMRALSATGW 344 Query: 349 MHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRI 408 M+ R+R + + L +DWR + D + + Q +G + RI Sbjct: 345 MNFRMRAMLVAVSSYHLWLDWREPGLHLARLFTDYEPGIHWPQVQMQ--SGTTGINTVRI 402 Query: 409 FNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND-LSLNYPLPIVDHKKAC 467 +NP QG DP G F+R W+PEL ++ Q+IH P + L YP P+VDH A Sbjct: 403 YNPVKQGLDQDPDGVFVRRWVPELADIDAQHIHEPWKADNAGRVLGKRYPFPVVDHLSAA 462 Query: 468 HHTLNQYYAAKKQS 481 + +A +K Sbjct: 463 KEAREKVWAIRKGG 476 >gi|194332801|ref|NP_001123706.1| hypothetical protein LOC100170456 [Xenopus (Silurana) tropicalis] gi|189442599|gb|AAI67313.1| LOC100170456 protein [Xenopus (Silurana) tropicalis] Length = 557 Score = 325 bits (833), Expect = 1e-86, Method: Composition-based stats. Identities = 130/493 (26%), Positives = 207/493 (41%), Gaps = 30/493 (6%) Query: 10 HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGI-SARQSHFIYASLLQV 68 + R LR+ DN L A SD V V+I + +++ +F S+ + Sbjct: 5 TIHIFRKGLRLHDNPTLVTALETSDV-VYPVYILDRNFMTSSSVIGSKRWNFFLQSIEDL 63 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128 +L + Q D L + + +T++ ++ + E D+ + Q Sbjct: 64 HCNLQKLNSCLFVIQG----DYERVLREHVEKWNITQVTFDLEIEPYYKGLDERIRAMGQ 119 Query: 129 HRV-ICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187 S L IL + ++ L D + + + Sbjct: 120 ELGFEVVSMVAHTLYDIKKILALNCGKPPLTYKNFLRVLSMLGNPDKPARQITSEDFIKC 179 Query: 188 VTPSNI--------PRFFDYPFQAIDPM-FPIGEQNALHILRKFCKEKVY--YYVEQRDI 236 +TP+ + P+ D P + GE AL L + +++ + + + + I Sbjct: 180 ITPTKLAAEEYYRIPKPEDLGISKDCPTNWIGGESEALSRLEQHLEKQGWVANFKKPQTI 239 Query: 237 PA--IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHL 294 P + T+ LSPY S+G LS R ++RL + S +L+WREF+ + Sbjct: 240 PNSLLPSTTGLSPYFSLGCLSVRVFFHRLSNIYAQSK-NHSLPPVSLQGQLLWREFFYTV 298 Query: 295 MAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLR 354 + P+ P +I+W K+ LQ WK+ TGFP IDA M QL+ GW+H+ R Sbjct: 299 ASSTPNFT-HMVGNPICLQIDWYKNEEQLQKWKEAKTGFPWIDAIMTQLHNEGWIHHLAR 357 Query: 355 MITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTI 413 A FL + DL + W G + F LLD D N G W W S Y RIF P Sbjct: 358 HAVACFLTRGDLWISWEEGMKVFEEFLLDADYCINAGNWMW-LSASAFFHHYTRIFCPVR 416 Query: 414 QGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND------LSLNYPLPIVDHKKAC 467 GKR DP+G +IR +LP L N P +YI+ P + ++ + +YPLP+VDHK A Sbjct: 417 FGKRSDPEGNYIRKYLPVLKNFPAKYIYEPWTAPEEIQKQAGCLIGKDYPLPMVDHKTAS 476 Query: 468 HHTLNQYYAAKKQ 480 H L +++ Sbjct: 477 EHNLQLMRQVREE 489 >gi|318058735|ref|ZP_07977458.1| deoxyribodipyrimidine photo-lyase [Streptomyces sp. SA3_actG] Length = 455 Score = 325 bits (832), Expect = 1e-86, Method: Composition-based stats. Identities = 129/470 (27%), Positives = 220/470 (46%), Gaps = 22/470 (4%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M +V +DLR+ D+ L AA ++ +V+ +F+ P + +A ++ F+ L Sbjct: 1 MKASIVLYTSDLRLHDHPPLRAAVREAE-EVVPLFVRDPGIKKVGFHAANRAAFLADCLG 59 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 + L ++G D + + ++ R L Sbjct: 60 DLDAGLRERGGRLVVR----AGDPAQVVRELVGSTGAERVHVAAGVSAYARNRADRLRAA 115 Query: 127 LQHRVICKSFDDSVL--LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL 184 L+ ++V+ LPPG ++ + + V+TP+ + ++ L + + + Sbjct: 116 LEGTGAELVEHEAVITALPPGEVVPGSKDHFAVFTPYHRQWSAQHLREPLGAP--RKLSV 173 Query: 185 TGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244 V +PR D + GE+ L + ++ + Y + D A GTS+ Sbjct: 174 PSKVRSDGVPRREDVE-GISPGLARGGEREGRAKLASWRRDGISRYEDLHDDLAGDGTSR 232 Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304 LSPYL G LS +C +R +GA +++ +L WR+F+ ++A P+ Sbjct: 233 LSPYLHFGALSAAECVHR-------ARAAGGAGADAFVRQLCWRDFHHQVLAARPAAA-H 284 Query: 305 KPFIPWTEKIEWNKDSHL-LQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363 + + P + D+ AW++G TG+P++DAAMRQL GWMHNR R++ ASFL K Sbjct: 285 EDYRPRGDHWRTGSDAEHEAAAWREGRTGYPVVDAAMRQLAHEGWMHNRGRLLAASFLTK 344 Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423 L +DWR+G +F+ L+DGDL +N WQW A TG D+ P R+ NP Q +++DP+G Sbjct: 345 TLYLDWRLGAAHFLDLLVDGDLVNNQMNWQWVAGTGTDTRP-GRVLNPLTQARKYDPEGD 403 Query: 424 FIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQ 473 ++RHW+PEL + + +H P W + YP P+VD + Sbjct: 404 YVRHWVPELRGIEGRAVHEP--WKRPREEREGYPEPLVDLAEGRDRFRRA 451 >gi|327274302|ref|XP_003221917.1| PREDICTED: cryptochrome DASH-like [Anolis carolinensis] Length = 525 Score = 325 bits (832), Expect = 1e-86, Method: Composition-based stats. Identities = 133/482 (27%), Positives = 220/482 (45%), Gaps = 31/482 (6%) Query: 3 ATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQ------HGISAR 56 A++ L LRNDLR DN+ L+ A ++D +++ ++ P + Q Sbjct: 2 ASSLPRTALCLLRNDLRCHDNEVLHWAQSHAD-RIVPLYCFDPRHYAQTYHYNFPKTGPF 60 Query: 57 QSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINE 116 + F+ S+ ++++L +KG + D + + V + ++ + E Sbjct: 61 RLRFLLESVKDLRETLKKKGSNLVVRKGKPEDVVRDLIIQLG---SVASVSFHEEATKEE 117 Query: 117 VRRDKLLEKRL-QHRVICKSFDDSVLLPPGSIL-NHALQMYKVYTPFRKALIQNLVQADL 174 + +K L + +H V ++F S L + H Q+ VYT FRKA+ + Sbjct: 118 LDVEKALIRVCTEHGVEVQTFWGSTLYHRQDLPFKHISQLPDVYTQFRKAVESQARVRPV 177 Query: 175 RSLPVPAIRLTGPVTPSNIPRFFDYPFQA------IDPMFPIGEQNALHILRKFCKEKV- 227 + L + NIP D+ + GE AL L+ + E Sbjct: 178 LKMEGQMKSLPPEIEEGNIPSLEDFGMTEPLRDPRSAFLCSGGETQALMRLQHYFWETNL 237 Query: 228 -YYYVEQRD-IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNEL 285 Y E R+ + + +++ +P+L++G +SPR ++++++ + + L EL Sbjct: 238 VASYKETRNGLIGLDYSTKFAPWLALGCISPRYIYDQIQKYEKERT--ANQSTYWVLFEL 295 Query: 286 IWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNT 345 WR+++R + Y P + I W KD L AWK+G TG P +DA MR+L T Sbjct: 296 AWRDYFRFVALKYGRKIFF-PRGLQDKDISWKKDPKLFDAWKEGRTGVPFVDANMRELAT 354 Query: 346 IGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPY 405 G+M NR R ASFL KDL +DWR+G E+F S L+D D+ SN G W ++A GND Sbjct: 355 TGFMSNRGRQNVASFLTKDLGLDWRMGAEWFESLLVDYDVCSNYGNWLYSAGIGNDPREN 414 Query: 406 FRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSW------LDKNDLSLNYPLP 459 R FN Q +D G + R W+PEL + +H P + L +YP+P Sbjct: 415 -RKFNMIKQALDYDGNGDYARLWVPELQCIRGGDVHTPWALSNGALSQAGVSLGSSYPVP 473 Query: 460 IV 461 I+ Sbjct: 474 II 475 >gi|21219363|ref|NP_625142.1| deoxyribodipyrimidine photolyase [Streptomyces coelicolor A3(2)] gi|5459246|emb|CAB48919.1| putative deoxyribodipyrimidine photolyase [Streptomyces coelicolor A3(2)] Length = 458 Score = 325 bits (832), Expect = 1e-86, Method: Composition-based stats. Identities = 140/478 (29%), Positives = 223/478 (46%), Gaps = 25/478 (5%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M+ +V DLR+ D+ L AA SDA V+ +F+ + + + L Sbjct: 1 MATSVVLFTRDLRLHDHPPLRAALDRSDA-VVPLFVRDRAVDAAGFAAPNRLALLADCLR 59 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 + L +G D +E + + + ++ + RR++LL Sbjct: 60 DLDSGLRDRGGRLVVRSG----DLVEEVCAVAGEAEADEVHLAADVSAHAHRREELLRSA 115 Query: 127 LQHRVICKSFDD--SVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL 184 L R D + +L PGS+ + + V+TP+ + + V+ L + +R+ Sbjct: 116 LSARGCRLHVHDAVTTVLAPGSVTPASSDHFAVFTPYFRRWSERAVREPLAAP--RRVRV 173 Query: 185 TGPVTPSNIPRFFDYPFQAIDPMFP-IGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS 243 V +P D + P P GE++A L + + + Y + D A TS Sbjct: 174 PDGVGSEPLPARGDL--TGLSPGLPTGGERDARKRLTAWLRGGIADYADHHDDLAGDATS 231 Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCM 303 +LSP L +G LSP + +R + GA +++ +L WR+F+ ++A P Sbjct: 232 RLSPDLHLGALSPVELVHRARRA-------GGPGAEAFVRQLAWRDFHHQVLAARPHASA 284 Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363 AW+ G TG+P++DAAMRQL GWMHNR R++ ASFL K Sbjct: 285 ADYRTRHDRWRTGAAAEADAAAWRDGRTGYPVVDAAMRQLRHEGWMHNRGRLLVASFLTK 344 Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423 L VDWR+G +F+ L+DGD+A+N WQWAA TG D+ P+ R+ NPT Q +RFDP GT Sbjct: 345 TLYVDWRVGAWHFLELLVDGDVANNQLNWQWAAGTGTDTRPH-RVLNPTTQARRFDPGGT 403 Query: 424 FIRHWLPELNNVPTQYIHAPHSW-LDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQ 480 ++R W+PEL + + +H P YP PIVD + L+++ A+ + Sbjct: 404 YVRRWVPELAGLAGRSVHEPWRLARAARAAYDAYPDPIVDLSEG----LDRFRRARGR 457 >gi|148238972|ref|YP_001224359.1| deoxyribodipyrimidine photolyase [Synechococcus sp. WH 7803] gi|147847511|emb|CAK23062.1| Deoxyribodipyrimidine photolyase [Synechococcus sp. WH 7803] Length = 490 Score = 325 bits (832), Expect = 2e-86, Method: Composition-based stats. Identities = 124/478 (25%), Positives = 197/478 (41%), Gaps = 35/478 (7%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M++ LVW + DLR+ D++ L A V+ ++I PE W Q SARQ F SL Sbjct: 1 MTLQLVWFKRDLRLVDHQPLARALARG--PVLPLYIVEPELWSQPDCSARQWAFCRESLQ 58 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEV-RRDKLLEK 125 +Q++ + G D+++ L+ Q V+ L+ + + RD+ + Sbjct: 59 DLQQACAALGQPLIIRSG----DAVDVLERARCQLGVSALWSHEETGNAWTFVRDRRVAA 114 Query: 126 RLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185 + R I LP ++ + + + + A P+P I Sbjct: 115 WARERGIPWHE-----LPQFGVVRRLGTRRGWARRWEARMGEAMTPAPTSLTPLPGIAPG 169 Query: 186 GPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIP--AIQGTS 243 T + D G AL L F +V Y P A G S Sbjct: 170 DLPTSEALALRSD----PCPHRQHGGRGMALQELDDFLAHRVQRYCRSISSPNLAFNGCS 225 Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCM 303 +LS Y++ G LS R+ R ++ G S+ + L W + + P + Sbjct: 226 RLSAYITWGCLSMREVLQRSRDL-------KGRGVSSFTSRLHWHCHFIQKLEDQPPIEW 278 Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363 + F P+ I + D AW +G TG P +DA MR L GW++ R+R + SF Sbjct: 279 -EDFHPFMRGIR-SLDHERFAAWAEGQTGVPFVDACMRALRAHGWINFRMRAMLMSFASY 336 Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423 +L + WR + Q +D + + Q +G+ S+ RI+NP QG DP+GT Sbjct: 337 NLWLPWRETGLHLARQFVDYEPGIHWSQCQMQ--SGSTSINTIRIYNPIKQGMDHDPEGT 394 Query: 424 FIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481 FIR W PEL +VP ++H P S L P PIVD ++ + + ++ S Sbjct: 395 FIRRWCPELEDVPAVHLHEPWS------LGGTRPKPIVDCAQSAREAKERIFEIRRSS 446 >gi|157737085|ref|YP_001489768.1| deoxyribodipyrimidine photolyase [Arcobacter butzleri RM4018] gi|157698939|gb|ABV67099.1| deoxyribodipyrimidine photolyase [Arcobacter butzleri RM4018] Length = 450 Score = 324 bits (831), Expect = 2e-86, Method: Composition-based stats. Identities = 146/469 (31%), Positives = 229/469 (48%), Gaps = 25/469 (5%) Query: 10 HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69 ++W R DLRI DN+ L A +V+ +FI + ++ FIY S+ +++ Sbjct: 3 QILWFRRDLRIIDNEILANA----KGEVLPIFIFDKNILQNLPKDDKRVTFIYKSVYKLK 58 Query: 70 KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH 129 + L G+ FD + ++ + ++ +RD+ +EK Sbjct: 59 EDLKSIGLDLAI----FFDTPKNVFTKLKKE-NFDEILVSVDFDNYAKKRDEEVEKI--- 110 Query: 130 RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189 + + F DS L+ P IL + YKV+TPF L + Sbjct: 111 -IPLRRFLDSYLIDPKIILKSDQKPYKVFTPFYNYLEPLHQSNHIEEFKTATNIKKINFD 169 Query: 190 PSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYL 249 P D F I+ P + L +K+ Y + RD + S LS +L Sbjct: 170 YDFFPTLQDLGF--IEQKLPDFLYKSADELITIFSKKINNYQKNRDFFHLDAGSNLSVHL 227 Query: 250 SIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIP 309 G++S + +N++K+ PK ++ ELIWREFY +++ +P Sbjct: 228 RFGLISAKMVFNKIKKLQA-----PKKEIDFFIRELIWREFYNYILFHFPKSQFENLNGI 282 Query: 310 WTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDW 369 + WN++ + W +G TG PIIDA+M+ LN G MHNRLRMI AS+LVK+LL+DW Sbjct: 283 E---VNWNENEEDFKKWCEGNTGVPIIDASMKHLNNTGLMHNRLRMIVASYLVKNLLIDW 339 Query: 370 RIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWL 429 + GEEYF +LLD + +SN G WQWAASTG D+VPYFR+FNP +Q K+FD + FI+ L Sbjct: 340 KKGEEYFALKLLDYEASSNIGSWQWAASTGVDAVPYFRVFNPYLQSKKFDSEAIFIKSVL 399 Query: 430 PELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478 +L ++PT+ IH + + ++ L+YP IV + + ++ A Sbjct: 400 KDLKDIPTKQIHTENGIQE--NIFLDYPKQIVGINYSRDRAILEFKRAN 446 >gi|120556015|ref|YP_960366.1| deoxyribodipyrimidine photo-lyase [Marinobacter aquaeolei VT8] gi|120325864|gb|ABM20179.1| deoxyribodipyrimidine photo-lyase family protein (cryptochrome) [Marinobacter aquaeolei VT8] Length = 505 Score = 324 bits (831), Expect = 2e-86, Method: Composition-based stats. Identities = 109/480 (22%), Positives = 192/480 (40%), Gaps = 25/480 (5%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 +VW + DLR+ D+ LYAA + V+ +++ PE W+Q S RQ F+ SL ++K Sbjct: 4 VVWFKRDLRVEDHGPLYAAVQSGQ-PVVPLYVVEPEYWQQPDTSRRQWQFVAESLESLRK 62 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEV-RRDKLLEKRLQH 129 L + G + I LD Q +T++F +++ + +RDK + Q Sbjct: 63 QLKRLGSDLLIAHG----EVIRTLDDLKQQYGITQVFCHQETGGDWTFQRDKAVIAWCQS 118 Query: 130 RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189 + I + + ++++ P Sbjct: 119 QQIEFREWQGFGVVRRLVNRDD----------WDQHWNRIIKSTRLPAPEGIRSPDTSGW 168 Query: 190 PSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIP--AIQGTSQLSP 247 P ++P G + A+ +L F + + Y P A + S+LSP Sbjct: 169 PQSLPAPAQLNGGPCPDRQAGGSERAIALLDSFLERRCVGYQYNMSSPLTAPRACSRLSP 228 Query: 248 YLSIGVLSPRQCWNRLKE--EFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305 +L+ G +S R + + KE + + L + K S+ + L W + + P + Sbjct: 229 HLAWGTISLRDVYQQSKETGDHRNTLPRKKKSLTSFRSRLHWHCHFIQKLEDEPELEFRA 288 Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365 +S L W++G TG+P++DA MR L GW++ R+R + + L Sbjct: 289 MHRELEHLKTGPNNSERLHRWQEGQTGWPLVDACMRSLEHTGWINFRMRAMLMAVASYQL 348 Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425 + WR + D + + Q +G + RI+NP +Q ++ DP+G FI Sbjct: 349 WLHWRDPALHLARLFTDFEPGIHYPQAQMQ--SGLTGINALRIYNPVLQSQKLDPEGEFI 406 Query: 426 RHWLPELNNVPTQYIHAPHSWLDKNDL---SLNYPLPIVDHKKACHHTLNQYYAAKKQSL 482 R W+PEL VP + IH P Y P+ DH++A +K+ + Sbjct: 407 RRWIPELAGVPAEMIHTPWLMTPAQKQRFGGNTYISPVCDHEQAARVARKAVGEFRKRQV 466 >gi|313682739|ref|YP_004060477.1| deoxyribodipyrimidine photo-lyase [Sulfuricurvum kujiense DSM 16994] gi|313155599|gb|ADR34277.1| Deoxyribodipyrimidine photo-lyase [Sulfuricurvum kujiense DSM 16994] Length = 455 Score = 324 bits (831), Expect = 2e-86, Method: Composition-based stats. Identities = 137/480 (28%), Positives = 206/480 (42%), Gaps = 41/480 (8%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 ++W R DLRI DN L + +V+ +FI P R+ IY +LL ++ Sbjct: 4 ILWFRRDLRIEDNPLLSL-----EGEVLPIFIFDPNILSSLQNDDRRVSIIYNALLNLKS 58 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130 SL +G+ + ++ + ++ + Y+ + RD+ + L Sbjct: 59 SLQMRGLDL----ALFYGKPVDVFKWLLSRHHFDEVCASGDYDHYALERDREISHLLP-- 112 Query: 131 VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG---- 186 S DD+ + P I+ + Y V+TPF +R LT Sbjct: 113 --FNSLDDTYIFRPDEIVKNDGTPYLVFTPFYNRAKSLFSPEHMREFIPVEQSLTDFEYD 170 Query: 187 -------PVTPSNIPRFFDYPF--QAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIP 237 S + F Q + + L +F K+ +Y + RD Sbjct: 171 SLHTIRQSDHTSKPMQLESIGFISQKLSSRQQ---SSPAIQLDQFAS-KIAHYSQDRDYM 226 Query: 238 AIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAF 297 A+ GTS LS L G LS R + + K S + +LI+REFY L+ Sbjct: 227 ALNGTSGLSTQLRFGTLSVRAVLRWML-----IQKKRGSDTEPFFRQLIFREFYAMLLYH 281 Query: 298 YPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMIT 357 +P + F I + A+ TG PI+DA +R+L G MHNR RM+ Sbjct: 282 FPHLSEQN-FRYPFRGIA---NEEYFNAFCTAKTGVPIVDAGIRELLETGEMHNRARMLC 337 Query: 358 ASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKR 417 ASF K+LL+ W+ GE +F L D D ASN WQW+A TG D PYFRIFNP QGK+ Sbjct: 338 ASFFTKNLLLPWQWGEAFFAQHLNDYDAASNILSWQWSAGTGVDPQPYFRIFNPYAQGKK 397 Query: 418 FDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477 FD G +IR W+P+L +V + +H + +YP PIV K + L+ + + Sbjct: 398 FDSDGVYIRRWMPQLASVSSTTLHNETALFSLTL--CDYPHPIVYQKTSAKRALDHFKSI 455 >gi|302745154|gb|ADL62680.1| criptochrome 1b [Phreatichthys andruzzii] Length = 564 Score = 324 bits (830), Expect = 2e-86, Method: Composition-based stats. Identities = 109/452 (24%), Positives = 182/452 (40%), Gaps = 30/452 (6%) Query: 52 GISARQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQ 111 + + F+ L + SL + + D + ++T+L Y Sbjct: 3 NVGINRWRFLLQCLEDLDASLRKLNSRLFVIRGQPTD----VFPRLFKEWKITRLSYEYD 58 Query: 112 YEINEVRRDKLLEKRL-QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLV 170 E RD ++K + V L I+ + + LI + Sbjct: 59 SEPFGKDRDAAIKKLATEAGVEVFVRISHTLYDLDKIIELNGGQSPLTYKRFQTLISKMD 118 Query: 171 QADLRSLPVPAIRLTGPVTPSN--------IPRFFDYPFQA---IDPMFPIGEQNALHIL 219 ++ + + A + TP + +P + F+ ++P GE AL L Sbjct: 119 PVEIPAETITAEVMGKCATPVSDDHDDKFGVPSLEELGFETDGLSSAVWPGGETEALTRL 178 Query: 220 RKFCKEKVYYYVEQRDIPAIQGT----SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPK 275 + + K + +R + LSPYL G LS R + +L + + + K Sbjct: 179 ERHLERKAWVANFERPRMNANSLLASPTGLSPYLRFGCLSCRLFYFKLTDLYRKVK-KNS 237 Query: 276 SGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPI 335 S +L+WREF+ P + F P +I W+++ L W +G TGFP Sbjct: 238 LPPLSLYGQLLWREFFYTAATNNPHFDKME-FNPICVQIPWDRNPEALAKWAEGRTGFPW 296 Query: 336 IDAAMRQLNTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQW 394 IDA M QL GW+H+ R A FL + DL + W G + F LLD D + N G W W Sbjct: 297 IDAIMTQLRQEGWIHHLARHAVACFLTRGDLWISWEEGMKVFEELLLDADWSVNAGSWMW 356 Query: 395 AASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLD------ 448 S + +F + P G+R DP G +IR +LP L P ++I+ P + + Sbjct: 357 -LSCSSFFQQFFHCYCPVGFGRRTDPNGDYIRRYLPILRGFPAKFIYDPWNAPESVQKVA 415 Query: 449 KNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQ 480 K + ++YP P+V+H +A + + +Q Sbjct: 416 KCIIGVHYPKPMVNHAEASRINIERMKQIYQQ 447 >gi|156353900|ref|XP_001623146.1| predicted protein [Nematostella vectensis] gi|156209813|gb|EDO31046.1| predicted protein [Nematostella vectensis] Length = 541 Score = 323 bits (829), Expect = 3e-86, Method: Composition-based stats. Identities = 125/501 (24%), Positives = 184/501 (36%), Gaps = 35/501 (6%) Query: 6 AMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASL 65 S + WLR LRI DN AL A N V+I + I F+ +L Sbjct: 19 KTSHSIHWLRKGLRIHDNPALRDAVLNWGTF-RVVYILDTKSVASSNIGLNLWRFLLQAL 77 Query: 66 LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125 + SL + + + + +T+L + E RD + Sbjct: 78 EDLDDSLRKLNSRLFVIRG----QPADVFPRLFREWGITRLTFEEDSEPFGKERDSAICM 133 Query: 126 RLQH-RVICKSFDDSVLLPPGSILNHALQ-MYKVYTPFRKALIQNLVQADLRSLPVPAIR 183 + V S L I++ Y F + P+ + Sbjct: 134 LAREAGVEVASHRSHTLYHLQGIIDRNGGTPPLTYKKFLSVIEGIAPPDPPVPHIDPSAQ 193 Query: 184 LTGPVTPSNIP-------RFFDYPFQAID---PMFPIGEQNALHILRKFCKEKVYYYVEQ 233 G S+ + + ++ GE AL L + + K + Sbjct: 194 ELGHTPLSDNHDELYGVPTMEELGLETSKLFVEVWHGGETEALKRLDRHLERKAWIASFG 253 Query: 234 RDIPAIQGT----SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWRE 289 + S +SPYL G LSPR + RL + + + K S +L+WRE Sbjct: 254 KPKVTSDSLMASPSGVSPYLRFGCLSPRLFYYRLMDLYRKV--KGGPPPTSLYGQLLWRE 311 Query: 290 FYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSH---LLQAWKQGYTGFPIIDAAMRQLNTI 346 F+ + P+ + P I+W D LQ W TGFP IDA M QL Sbjct: 312 FFFVVSTNNPNFDKMES-NPICLYIKWRTDKQVASDLQKWTDAQTGFPWIDAIMSQLKQE 370 Query: 347 GWMHNRLRMITASFLVKD-LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPY 405 GW+H R+ ASFL + L + W G + F LLD D +SN G W W S S + Sbjct: 371 GWIHYLARVAIASFLTRGCLWISWEAGMKVFAEHLLDADWSSNAGNWMWW-SYSAFSQQF 429 Query: 406 FRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSW------LDKNDLSLNYPLP 459 F P K D G +IR +LP L P +YIH P + K + +YP P Sbjct: 430 FNPPCPVEFSKSLDASGDYIRKYLPVLKGFPARYIHEPWKAPLNVQKMAKCIIGKSYPSP 489 Query: 460 IVDHKKACHHTLNQYYAAKKQ 480 +VDH+KA + + + K Sbjct: 490 MVDHEKAVSKNMEEMTSVYKS 510 >gi|62955979|gb|AAY23345.1| antennal cryptochrome [Mamestra brassicae] Length = 548 Score = 323 bits (829), Expect = 3e-86, Method: Composition-based stats. Identities = 111/500 (22%), Positives = 192/500 (38%), Gaps = 39/500 (7%) Query: 10 HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69 ++W R+ LR+ DN +L++A VFI E + + ++ +L + Sbjct: 5 SVLWFRHGLRLHDNPSLHSALEEKGFPFFPVFIFDGETAGTKVVGYNRMRYLLEALEDLD 64 Query: 70 KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH 129 L + G + + + +L + + E RD ++ + Sbjct: 65 NQLKKHGGRLIMIKGKPNV----VFRRLWEEFGIRRLCFEQDCEPVWRARDDSVKSACKE 120 Query: 130 -RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188 V+CK L P +++ + + + + + + Sbjct: 121 IGVVCKEHVSHTLWEPDTVIKANGGIPPLTYQMFLHTVATIGDPPRPVSDIDFTGVKFGS 180 Query: 189 TPSNIPRFFDYPFQAIDP---------------MFPIGEQNALHILRKFCKEKVY----- 228 P + F + P + GE AL +++ + Sbjct: 181 LPESFYHEFTVYDKTPKPEDLGVFLENEDIRMIRWVGGETTALKQMQQRLAVEYETFLRG 240 Query: 229 YYVEQRDIPAIQGTS-QLSPYLSIGVLSPRQCWNRLKEEFVDL---LIKPKSGAFSWLNE 284 Y+ P + G LSP L G LS R + +++ F + + +S + + Sbjct: 241 SYLPTHGNPDLLGPPISLSPALRFGCLSVRSFYWSVQDLFRQVHQGRLATQSASHFITGQ 300 Query: 285 LIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDS-HLLQAWKQGYTGFPIIDAAMRQL 343 LIWRE++ + P+ P I W + LQ W +G TGFP +DAAMRQL Sbjct: 301 LIWREYFYTMSVNNPNYG-QMAGNPICLDIPWKEPEGDELQRWVEGRTGFPFVDAAMRQL 359 Query: 344 NTIGWMHNRLRMITASFLVKD-LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDS 402 T GW+H+ R ASFL + L + W G +F+ LLD D + G W W +S+ ++ Sbjct: 360 RTEGWLHHAARNTVASFLTRGTLWLSWEHGLNHFLKYLLDADWSVCAGNWMWVSSSAFEA 419 Query: 403 -VPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWL------DKNDLSLN 455 + P G+R DP G ++R ++PEL +P QYI+ P + + Sbjct: 420 LLDSGECACPVRLGQRLDPSGEYVRRYVPELARMPVQYIYEPWKAPIDIQERATCIIGKD 479 Query: 456 YPLPIVDHKKACHHTLNQYY 475 YP P+V+H A N Sbjct: 480 YPAPVVNHLVAAQRNKNAMK 499 >gi|255964971|gb|ACU44658.1| cryptochrome 2B [Medicago sativa] Length = 484 Score = 323 bits (829), Expect = 3e-86, Method: Composition-based stats. Identities = 115/434 (26%), Positives = 202/434 (46%), Gaps = 21/434 (4%) Query: 53 ISARQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQY 112 ++ SL + +SL G + D +++ L + K+ +N Y Sbjct: 2 PGRVSRWWLKQSLSHLDQSLKSLGAGLVMIKT---DSTLKALLECVNAVQAEKVVFNHLY 58 Query: 113 EINEVRRDKLLEKRLQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQ 171 + + RD ++++L I +S++ +L P I + + + + PF +Q ++ Sbjct: 59 DPVSLVRDHNIKEKLVELGISVQSYNGDLLHEPWHIYDESGHAFTTFDPFWNRCLQMQMK 118 Query: 172 ADLRSLPVPAIRLTGPVTPSNI------PRFFDYPFQAIDPMFPIGEQNALHILRKFCKE 225 P I G V +I + + G + L +F + Sbjct: 119 TYSPIPPCQLILAQGKVEKHSIEQLGLENELETSSNALLARAWSPGWSKSDKALTEFVEN 178 Query: 226 KVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPK----SGAFSW 281 + +Y + R + TS LSPY+ G LS R+ + + + + + A + Sbjct: 179 NLIHYTKSRLNLGVDSTSLLSPYIHFGELSVRKVFQLARTKQILWKNEGNIVGEESATFF 238 Query: 282 LNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMR 341 L + +RE+ R+L +P + +P + + WN D + +AW+ G TG+P++DA MR Sbjct: 239 LKAIGFREYSRYLCFSFP-FTVERPLLGNLKFFPWNTDPSMFKAWRLGRTGYPLVDAGMR 297 Query: 342 QLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGND 401 +L GW+HN++R+I +SF VK LL+ W+ G +YF LLD DL S+ GWQ+ + + D Sbjct: 298 ELWATGWIHNKMRVIVSSFAVKMLLIPWKWGMKYFWDTLLDADLESDILGWQYISGSLPD 357 Query: 402 SVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSW------LDKNDLSLN 455 R+ +P IQG ++D +G ++R WLPEL +PT++IH P + +L N Sbjct: 358 GHELERLDDPEIQGTKYDSEGEYVRQWLPELARIPTEWIHHPWNAPPTVLRASGVELGQN 417 Query: 456 YPLPIVDHKKACHH 469 YP PI+D A Sbjct: 418 YPKPIIDIDLAREQ 431 >gi|224095373|ref|XP_002196554.1| PREDICTED: cryptochrome 1 (photolyase-like) [Taeniopygia guttata] Length = 588 Score = 323 bits (828), Expect = 4e-86, Method: Composition-based stats. Identities = 109/445 (24%), Positives = 179/445 (40%), Gaps = 30/445 (6%) Query: 59 HFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVR 118 F+ L + +L + + + + + KL E Sbjct: 21 RFLLQCLEDLDANLRKLNSRLFVIRG----QPADVFPRLFKEWNIAKLSIEYDSEPFGKE 76 Query: 119 RDKLLEKRLQHRVICKSFD-DSVLLPPGSILN-HALQMYKVYTPFRKALIQN-LVQADLR 175 RD ++K + L I+ + Q Y F+ + + ++ + Sbjct: 77 RDAAIKKLASEAGVEVIVRISHTLYDLDKIIELNGGQPPLTYKRFQTLISRMEPLEMPVE 136 Query: 176 SL-PVPAIRLTGPVTPSNIPR-----FFDYPFQA---IDPMFPIGEQNALHILRKFCKEK 226 ++ P + T PV+ + + + F ++P GE AL L + + K Sbjct: 137 TITPEVMKKCTTPVSDDHDEKYGVPSLEELGFDTDGLPSAVWPGGETEALTRLERHLERK 196 Query: 227 VYYYVEQRDIPAIQGT----SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWL 282 + +R + LSPYL G LS R + +L + + + K S S Sbjct: 197 AWVANFERPRMNANSLLASPTGLSPYLRFGCLSCRLFYFKLTDLYKKVK-KNSSPPLSLY 255 Query: 283 NELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQ 342 +L+WREF+ P + P +I W+K+ L W +G TGFP IDA M Q Sbjct: 256 GQLLWREFFYTAATNNPRFDKMEG-NPICVQIPWDKNPEALAKWAEGRTGFPWIDAIMTQ 314 Query: 343 LNTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGND 401 L GW+H+ R A FL + DL + W G + F LLD D + N G W W S + Sbjct: 315 LRQEGWIHHLARHAVACFLTRGDLWISWEEGMKVFEELLLDADWSVNAGSWMW-LSCSSF 373 Query: 402 SVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLD------KNDLSLN 455 +F + P G+R DP G +IR +LP L P +YI+ P + + K + +N Sbjct: 374 FQQFFHCYCPVGFGRRTDPNGDYIRRYLPVLRGFPAKYIYDPWNAPESIQKAAKCIIGVN 433 Query: 456 YPLPIVDHKKACHHTLNQYYAAKKQ 480 YP P+V+H +A + + +Q Sbjct: 434 YPKPMVNHAEASRLNIERMKQIYQQ 458 >gi|332292002|ref|YP_004430611.1| DNA photolyase FAD-binding protein [Krokinobacter diaphorus 4H-3-7-5] gi|332170088|gb|AEE19343.1| DNA photolyase FAD-binding protein [Krokinobacter diaphorus 4H-3-7-5] Length = 510 Score = 323 bits (828), Expect = 4e-86, Method: Composition-based stats. Identities = 112/490 (22%), Positives = 188/490 (38%), Gaps = 24/490 (4%) Query: 6 AMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASL 65 V++VW + DLR+ D+ LY A ++ ++I P S R +FI SL Sbjct: 13 KKEVNIVWFKRDLRLHDHLPLYNALQEGQ-PLLLLYILEPSLEVDPHYSDRHFNFIKESL 71 Query: 66 LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVR-RDKLLE 124 L +QK L D+ + ++ +F +++ + RD LE Sbjct: 72 LNLQKELKAFNTKILIIH----DEVVSAFKELIKHYKIHTVFSHQETGLRVTYDRDLALE 127 Query: 125 KRLQHRVICKSFD--DSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAI 182 + I + V + + + Q + + + +I Sbjct: 128 AYANNLKIASPENKFGWVEFANNGVQRKLRNRVGWSEDWEWFMKQPQIPFQPKKNQLLSI 187 Query: 183 RLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVY-YYVEQRDIP--AI 239 + + + A P G A+ L F + Y Y + P A Sbjct: 188 EDINAL--EDNFKKVSLQTSASSPFQKGGTTMAMRYLTSFLHDNRYLNYAKHISKPSLAR 245 Query: 240 QGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYP 299 + S+LSPY++ G +S RQ + K K K + + L W+ + Sbjct: 246 KSCSRLSPYIAWGNVSIRQVYQEAKHFRES--SKNKRAIDGFTSRLRWQAHFIQKFEMED 303 Query: 300 SVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITAS 359 S+ K+ N + +AWK+G TG+P++DA MR L G+++ R+R +T S Sbjct: 304 SMEFV-SVNKGYHKLSKNVNVKYQKAWKEGKTGYPLVDACMRCLCETGYLNFRMRAMTLS 362 Query: 360 FLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFD 419 F +L W+ + Q LD + + Q G + RI+NP D Sbjct: 363 FFTHNLWQPWQDATYHLAQQFLDFEPGIHYPQIQMQ--AGETGINMLRIYNPVKNSYEHD 420 Query: 420 PQGTFIRHWLPELNNVPTQYIHAPHSWLDKND------LSLNYPLPIVDHKKACHHTLNQ 473 G FI+ W+PEL NVP YIH P + + +YP PI+D KK H + Sbjct: 421 EDGEFIKKWIPELVNVPVAYIHEPWTMSALEQQFCNTVIGEDYPAPIIDIKKTAKHAGDV 480 Query: 474 YYAAKKQSLL 483 + K +++ Sbjct: 481 LWKLKDDNMV 490 >gi|148226272|ref|NP_001088990.1| Cry1 protein [Xenopus laevis] gi|49899105|gb|AAH76838.1| Cry1 protein [Xenopus laevis] Length = 556 Score = 323 bits (827), Expect = 5e-86, Method: Composition-based stats. Identities = 131/493 (26%), Positives = 208/493 (42%), Gaps = 30/493 (6%) Query: 10 HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGI-SARQSHFIYASLLQV 68 + R LR+ DN L AA SD + V+I + +++ +F+ S+ + Sbjct: 5 TIHIFRKGLRLHDNPTLVAALETSDI-IYPVYILDKNFMTSSSVIGSKRWNFLLQSIEDL 63 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128 +L + Q D L + + +T++ ++ + E D+ + Q Sbjct: 64 HCNLQKLNSCLFVIQG----DYQSVLREHVQKWHITQVTFDLEIEPYYKGMDERIRAMGQ 119 Query: 129 HRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187 S L SIL + ++ L D + + Sbjct: 120 ELGFDVVSKVAHTLYDVKSILALNYGKPPLTYKNFLRVLSVLGDPDKPARQITLEDFIKC 179 Query: 188 VTPSN--------IPRFFDYPF-QAIDPMFPIGEQNALHILRKFCKEKVY--YYVEQRDI 236 TP+ IP+ D + P + GE AL L + +++ + + + + + Sbjct: 180 TTPTEFAAEEYYRIPKPEDLGICRDCAPNWKGGESEALCRLEQHLEKQGWVANFQKPQTV 239 Query: 237 PA--IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHL 294 P + T+ LSPY S G LS R ++RL + S +L+WREF+ Sbjct: 240 PNSLLPSTTGLSPYFSFGCLSARVFYHRLSNIYAQSK-NHSLPPVSLQGQLLWREFFYTA 298 Query: 295 MAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLR 354 + P+ P +IEW K+ LQ W++G TGFP IDA M QL+ GW+H+ R Sbjct: 299 ASSTPNFT-HMVGNPICLQIEWYKNEEQLQKWREGKTGFPWIDAIMAQLHEEGWIHHLAR 357 Query: 355 MITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTI 413 A FL + DL + W G + F LLD D + N G W W S Y RIF P Sbjct: 358 HAVACFLTRGDLWISWEEGMKVFEELLLDADYSINAGNWMW-LSASAFFHHYTRIFCPVR 416 Query: 414 QGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND------LSLNYPLPIVDHKKAC 467 G+R DP+G +IR +LP L N P +YI+AP + ++ + +YPLP+VDH A Sbjct: 417 FGRRTDPEGNYIRKYLPVLKNFPAKYIYAPWTAPEEIQKQSGCLIGKDYPLPMVDHTTAS 476 Query: 468 HHTLNQYYAAKKQ 480 H L ++ Sbjct: 477 EHNLQLMRLVREA 489 >gi|110626125|ref|NP_001034685.1| cryptochrome 4 [Gallus gallus] gi|34500076|gb|AAQ73619.1| cryptochrome-like protein [Gallus gallus] Length = 529 Score = 323 bits (827), Expect = 6e-86, Method: Composition-based stats. Identities = 134/494 (27%), Positives = 209/494 (42%), Gaps = 33/494 (6%) Query: 10 HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQ-WRQHGISARQSHFIYASLLQV 68 + R LR+ DN AL AA +S+ V V+I I A + HF+ SL + Sbjct: 5 TIHLFRKGLRLHDNPALLAALQSSEV-VYPVYILDRAFMTSSMHIGALRWHFLLQSLEDL 63 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128 + SL Q G Q + + + + +T++ + + E + + + Sbjct: 64 RSSLRQLGSCLLVIQG----EYESVVRDHVQKWNITQVTLDAEMEPFYKEMEANIRGLGE 119 Query: 129 HRV-ICKSFDDSVLLPPGSILN-HALQMYKVYTPFRKAL---------IQNLVQADLRSL 177 S L IL + Y F + L ++N D + Sbjct: 120 ELGFQVLSLMGHSLYNTQRILELNGGTPPLTYKRFLRILSLLGDPEVPVRNPTAEDFQRC 179 Query: 178 PVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVY--YYVEQRD 235 P + L +P P ++I P + GE L L + ++ + + + + Sbjct: 180 SPPELGLAECYGVP-LPTDLKIPPESISP-WRGGESEGLQRLEQHLADQGWVASFTKPKT 237 Query: 236 IPA--IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRH 293 +P + T+ LSPY S G LS R + RL + S +L+WREF+ Sbjct: 238 VPNSLLPSTTGLSPYFSTGCLSVRSFFYRLSNIYAQAK-HHSLPPVSLQGQLLWREFFYT 296 Query: 294 LMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRL 353 + + P+ P +I W +D+ L WK TGFP IDA M QL GW+H+ Sbjct: 297 VASATPNFTKM-AGNPICLQIRWYEDAERLHKWKTAQTGFPWIDAIMTQLRQEGWIHHLA 355 Query: 354 RMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPT 412 R A FL + DL + W G + F LLD D + N G W W S Y RIF P Sbjct: 356 RHAAACFLTRGDLWISWEEGMKVFEELLLDADYSINAGNWMW-LSASAFFHHYTRIFCPV 414 Query: 413 IQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND------LSLNYPLPIVDHKKA 466 G+R DP+G +IR +LP L N P++YI+ P + ++ + +YP P+VDHK+A Sbjct: 415 RFGRRTDPEGQYIRKYLPILKNFPSKYIYEPWTASEEEQKQAGCIIGRDYPFPMVDHKEA 474 Query: 467 CHHTLNQYYAAKKQ 480 H L A+++ Sbjct: 475 SDHNLQLMKQAREE 488 >gi|302517648|ref|ZP_07269990.1| deoxyribodipyrimidine photo-lyase [Streptomyces sp. SPB78] gi|302426543|gb|EFK98358.1| deoxyribodipyrimidine photo-lyase [Streptomyces sp. SPB78] Length = 455 Score = 323 bits (827), Expect = 6e-86, Method: Composition-based stats. Identities = 129/478 (26%), Positives = 225/478 (47%), Gaps = 26/478 (5%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M +V +DLR+ D+ L AA ++ +V+ +F+ P + +A ++ F+ L Sbjct: 1 MKASIVLYTSDLRLHDHPPLRAAVREAE-EVVPLFVRDPGIKKVGFHAANRAAFLADCLG 59 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 + L ++G D + + ++ R L Sbjct: 60 DLDAGLRERGGRLVVR----AGDPAQVVRELVGSTGAERVHVAAGVSAYARNRADRLRAA 115 Query: 127 LQHRVICKSFDDSVL--LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL 184 L+ ++V+ LPPG ++ + + V+TP+ + ++ L + + + Sbjct: 116 LEGTGAELVEHEAVITALPPGEVVPGSKDHFAVFTPYHRQWSAQHLREPLGAP--RKLSV 173 Query: 185 TGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244 V +PR D + GE+ L + ++ + Y + D A GTS+ Sbjct: 174 PSKVRSDGVPRREDVE-GISPGLARGGEREGRAKLASWRRDGISRYEDLHDDLAGDGTSR 232 Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304 LSPYL G LS +C +R +GA +++ +L WR+F+ ++A P+ Sbjct: 233 LSPYLHFGALSAAECVHR-------ARAAGGAGADAFVRQLCWRDFHHQVLAARPAAA-H 284 Query: 305 KPFIPWTEKIEWNKDSHL-LQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363 + + P + D+ AW++G TG+P++DAAMRQL GWMHNR R++ ASFL K Sbjct: 285 EDYRPRGDHWRTGSDAEHEAAAWREGRTGYPVVDAAMRQLAHEGWMHNRGRLLAASFLTK 344 Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423 L +DWR+G +F+ L+DGDL +N WQW A TG D+ P R+ NP Q +++D +G Sbjct: 345 TLYLDWRLGAAHFLDLLVDGDLVNNQMNWQWVAGTGTDTRP-GRVLNPLTQARKYDSEGD 403 Query: 424 FIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481 ++R W+PEL + + +H P W + YP P+VD + +++ A++Q Sbjct: 404 YVRQWVPELRGIEGRAVHEP--WKRPREEREGYPEPLVDLAEGR----DRFRRAREQG 455 >gi|34557872|ref|NP_907687.1| deoxyribodipyrimidine photo-lyase [Wolinella succinogenes DSM 1740] gi|34483590|emb|CAE10587.1| DEOXYRIBODIPYRIMIDINE PHOTOLYASE DNA PHOTOLYASEPHOTOREACTIVATING ENZYME [Wolinella succinogenes] Length = 447 Score = 323 bits (827), Expect = 6e-86, Method: Composition-based stats. Identities = 135/468 (28%), Positives = 217/468 (46%), Gaps = 35/468 (7%) Query: 10 HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69 L+W R DLR+ DN+ A +V+ +FI R+ +IY +++++ Sbjct: 3 SLIWFRRDLRLEDNRTFEQAS----GEVLPLFIFDSHLLSPLPKEDRRVGYIYGEVMRLK 58 Query: 70 KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH 129 L +G+ + + ++ L +Q ++LF ++ Y+ + RD+ + L Sbjct: 59 SELRARGLDLAI----FYGEPLKILSRL-KEQGFSRLFASQDYDSYALSRDEAARELLD- 112 Query: 130 RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRS---LPVPAIRLTG 186 C+ D+ L P +L Y +++ + ++ L + LP Sbjct: 113 ---CRFVLDNYLFDPNEVLKKEGSPYTIFSAYYNQSLKILSEGHYAKGLDLPKKLAPYPI 169 Query: 187 PVTPS-NIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245 P PS F P + P L +F K+ Y RD + TS L Sbjct: 170 PAPPSLESMGFSPLPLLESLKILP------QKRLEEFSS-KITRYALDRDSLEAEATSGL 222 Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305 S +L G L R+ RLK + + + +++WREFY L+ +P + Sbjct: 223 SLFLRFGTLGVREVIRRLKVWQEEGIK-----VAPFYRQILWREFYAMLLYHFPH-SERE 276 Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365 F P ++ W++ L+ W++G G P++DA MR+LN G+MHNR RM+ ASFL K+L Sbjct: 277 DFKPM--QMRWSESQERLERWQKGECGVPLVDAGMRELNHTGFMHNRARMVCASFLTKNL 334 Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425 + W GE YF S+LLD D+A N G WQW A +G D+ P+FRIFNP Q +FDP+G ++ Sbjct: 335 HLHWSWGERYFASKLLDYDVAQNAGNWQWCAGSGADAQPFFRIFNPYTQSLKFDPKGEYV 394 Query: 426 RHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQ 473 + W+PEL + TQ + W L Y PIV K++ Sbjct: 395 KRWIPELRGISTQNWSSEERW---EGLKERYLAPIVSAKRSAQEAKAM 439 >gi|126695730|ref|YP_001090616.1| putative deoxyribodipyrimidine photolyase [Prochlorococcus marinus str. MIT 9301] gi|126542773|gb|ABO17015.1| putative deoxyribodipyrimidine photolyase [Prochlorococcus marinus str. MIT 9301] Length = 498 Score = 321 bits (824), Expect = 1e-85, Method: Composition-based stats. Identities = 117/481 (24%), Positives = 215/481 (44%), Gaps = 35/481 (7%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 ++++W + DLRI DN+AL A ++D ++ ++I + W Q+ S RQ F SL+ Sbjct: 2 KGINILWFKKDLRIFDNEALCEAIKDND--ILPIYIIELDIWNQNTHSDRQWQFCKESLI 59 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQY-EINEVRRDKLLEK 125 ++ +L++ G + I D + ++ L+ +++ + +RD+ + + Sbjct: 60 DLRNALAEIGQPLIIRTG----NVINIFDEISSKFKIKGLYSHQETGDWLTYKRDQKVRE 115 Query: 126 R-LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL 184 L +I K F S+ L ++K +NL++A LR + +I L Sbjct: 116 WALSKNIIWKEFLQ------FSVFRGNLDRNNWSKKWQKNSEKNLLKAPLR---INSINL 166 Query: 185 TGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIP--AIQGT 242 PS+ + F + + G + L ++ F K+ Y + P + Sbjct: 167 NIGEIPSD--KIFSFKKETCPGRMQGGRKKGLERMQYFFSNKLDSYSKDISSPEKSFDSC 224 Query: 243 SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVC 302 ++LSPY+ G +S ++ + R I + + + L W + + P + Sbjct: 225 TRLSPYICWGCISLKEIFKR-------ANISKNNNSRMLKSRLTWHCHFIQKLESEPELE 277 Query: 303 MGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLV 362 + + P+ + I K++ LL +W G TGFP IDA MR LN GW++ R+R + SF Sbjct: 278 F-REYHPFFKNIR-EKNNELLYSWSSGNTGFPFIDACMRSLNFNGWINFRMRAMLMSFAS 335 Query: 363 KDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQG 422 +L + W+ ++ +D + + Q +G S+ RI+NP QGK DPQG Sbjct: 336 YNLWLPWQDSGSELANKFVDYEPGIHWNQCQMQ--SGTTSINTNRIYNPIKQGKDHDPQG 393 Query: 423 TFIRHWLPELNNVPTQYIHAPHSWL---DKNDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479 FI+ W+PEL ++ +IH P + +NY PI+D + + K Sbjct: 394 KFIKKWIPELKDISLNFIHEPWLLSIFNQEEYEKINYIRPIIDIPISTRTAKKKIQEITK 453 Query: 480 Q 480 + Sbjct: 454 K 454 >gi|156378195|ref|XP_001631029.1| predicted protein [Nematostella vectensis] gi|156218062|gb|EDO38966.1| predicted protein [Nematostella vectensis] Length = 498 Score = 321 bits (824), Expect = 1e-85, Method: Composition-based stats. Identities = 126/498 (25%), Positives = 204/498 (40%), Gaps = 37/498 (7%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M + W R LR+ DN+ L A SD +F + +S F+ SL Sbjct: 1 MVNSVHWFRKGLRLHDNEPLRRAIEGSDTF-RGIFFLDKAAVKNAKVSPNGWRFLIESLR 59 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 + +SL + Q I+ Q ++KL + E +RD +++ Sbjct: 60 DLDQSLQKYNSRLFIIQG----QPIDVFPKLIKQWNISKLTFEYDSEPFPRQRDLAVKRI 115 Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQA-DLRSLPVPAI--- 182 + + S L + L+M + P + +V+ PV +I Sbjct: 116 AEKAGVDVIVCSSHTLYDIECIEQILEMNEGKPPVLFKDFEAIVRKLGPPENPVESITRK 175 Query: 183 ---RLTGPVTPSNIPR-----FFDYPFQAID----PMFPIGEQNALHILRKFCKEKVYYY 230 P+T ++ + + + D M+ GE+ AL+ L ++K+ Sbjct: 176 SFMNCICPITSTHSEKFGVPSLAELGIKPADVTCGDMWVGGEREALNRLG-ILEDKILGS 234 Query: 231 VEQRDIPAI----QGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELI 286 ++ +QLSPYL G LSP+ + +L +V + P S +LI Sbjct: 235 NSSKNCDGSSVLFPSRTQLSPYLRFGCLSPKLYYKKLTGAYVKMQFSP--PPMSLYRQLI 292 Query: 287 WREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTI 346 WREF+ L + P++ P +I W ++ WKQG TGFP IDA MRQL Sbjct: 293 WREFFFTLASKNPNMDQVND-NPLCIQISWEENKDHFLCWKQGNTGFPWIDAIMRQLQKE 351 Query: 347 GWMHNRLRMITASFLVKD-LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPY 405 GW+H+ R+ FL + L + W G F LD + + N+G W W S Sbjct: 352 GWIHHLARLSVGCFLTRGCLWISWEEGLRAFEELQLDAEWSMNSGSWLW-LSCSAFFHGQ 410 Query: 406 FRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDK------NDLSLNYPLP 459 F P GK+ DP G++IR ++PEL ++P +Y++ P + D + +YP P Sbjct: 411 IPWFCPVEVGKKLDPSGSYIRKYVPELRSMPLKYLYEPWTAPDDIQRAAMCVIGEDYPHP 470 Query: 460 IVDHKKACHHTLNQYYAA 477 IVDH + L + Sbjct: 471 IVDHIEQRKACLQRLKTV 488 >gi|123965634|ref|YP_001010715.1| putative deoxyribodipyrimidine photolyase [Prochlorococcus marinus str. MIT 9515] gi|123200000|gb|ABM71608.1| putative deoxyribodipyrimidine photolyase [Prochlorococcus marinus str. MIT 9515] Length = 503 Score = 321 bits (824), Expect = 1e-85, Method: Composition-based stats. Identities = 123/481 (25%), Positives = 205/481 (42%), Gaps = 35/481 (7%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 +++++W + DLRI DN+AL + + D +I +FI E W Q S RQ F SLL Sbjct: 2 KNINILWFKKDLRINDNEALIESLKDRD--IIPIFIIEKEIWSQKTYSDRQWQFCKESLL 59 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEV-RRDKLLEK 125 ++ SL+ G IE D + ++ +++ +RD+ + K Sbjct: 60 DLRISLANIGQPLIIRTGK----VIEIFDQISNNFEIKAIYSHQETGDYLTYKRDQEVRK 115 Query: 126 RLQ-HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL 184 ++I K + S+ L T ++K + + L + P+ Sbjct: 116 WASMKKIIWKEYLQ------FSVFRGKLDRNNWSTKWKKNMERKLFTEPSKINPIE--ID 167 Query: 185 TGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIP--AIQGT 242 G + P N F D G + L + F K+ YY + P + Sbjct: 168 PGEIPPDNFFCFKD---DFCKGRLKGGREIGLKRMEYFFSNKLSYYSKDISSPEKSFDSC 224 Query: 243 SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVC 302 S+LSPY+S G +S ++ ++ + + L W + + P + Sbjct: 225 SRLSPYISWGCISIKEIIHKANSIT-------NPNSKMLKSRLTWHCHFIQKLESEPELE 277 Query: 303 MGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLV 362 K F P+ +KI KDSHLL+ W +G TGFP +DA MR LN GW++ R+R + SF Sbjct: 278 F-KEFHPYFQKIR-KKDSHLLKLWSEGKTGFPFLDACMRSLNFHGWLNFRMRAMLMSFAS 335 Query: 363 KDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQG 422 +L + W+ S+ LD + + Q G S+ RI+NP QGK DP+G Sbjct: 336 YNLWIPWQESGSELASKFLDYEPGIHWNQCQMQ--AGTTSINVNRIYNPIKQGKDHDPKG 393 Query: 423 TFIRHWLPELNNVPTQYIHAPHSWL---DKNDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479 FI+ W+PE+ N P ++H P K + Y PI++ + + + + Sbjct: 394 NFIKKWVPEIQNYPENFVHEPWLMEKFNSKEYENSEYIKPIINLSETTKNARKRIQEITQ 453 Query: 480 Q 480 + Sbjct: 454 R 454 >gi|312194378|ref|YP_004014439.1| deoxyribodipyrimidine photo-lyase [Frankia sp. EuI1c] gi|311225714|gb|ADP78569.1| Deoxyribodipyrimidine photo-lyase [Frankia sp. EuI1c] Length = 447 Score = 321 bits (824), Expect = 1e-85, Method: Composition-based stats. Identities = 132/454 (29%), Positives = 198/454 (43%), Gaps = 22/454 (4%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 L DLR+ DN L AA + + +F+ R + + F+ SL + Sbjct: 2 TTLAVFTRDLRVHDNPMLTAAALAGE-HTVPLFVLDAAMARSGFATGARERFLAESLADL 60 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128 +SL + G D +E + + + RR+ L L Sbjct: 61 DRSLRELGGRLVVR----AGDPVEQVCRVADEVDAGTVHLAADCSGYAQRREAALRSALA 116 Query: 129 HRVICKSFDD--SVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 R D V++ PG + Y V+ + + + + P +RL Sbjct: 117 ERGRTLHCHDEAHVVVAPGRVTPAGRDHYAVFGAYHRRWEAAGWRRVI--APPARLRLPA 174 Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246 + P ++ F GE ++ +E V Y E+RD A TS+LS Sbjct: 175 VDPGALPPIGGPAGGESAGGGFHGGETVGRRRAEEWLREGVEVYDERRDQLAADATSRLS 234 Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP 306 PYL +G LS + + A ++ +L WR+F+ L+A P+ Sbjct: 235 PYLHLGCLSALELATQA---------GTGDAARDFVRQLAWRDFFHQLLAARPAAAHE-- 283 Query: 307 FIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLL 366 W D L AW+ G+TG PI+DA MRQL T GW+ NR RMITASFL K L Sbjct: 284 -DYRDAHRTWRDDPAALDAWRSGHTGIPIVDAGMRQLLTEGWLPNRARMITASFLTKTLG 342 Query: 367 VDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIR 426 +DWR G ++ LLD D+A+N+ WQW A TG D+ P R+ NP Q +RFDP G ++R Sbjct: 343 LDWRAGAAHYTEHLLDADVANNSLNWQWVAGTGTDTRP-GRVLNPLRQAERFDPDGVYVR 401 Query: 427 HWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPI 460 +PEL +P + +H P D+ +L+YP P+ Sbjct: 402 RHVPELAGLPGRQVHRPWRLPDRERAALDYPEPL 435 >gi|332662834|ref|YP_004445622.1| cryptochrome, DASH family [Haliscomenobacter hydrossis DSM 1100] gi|332331648|gb|AEE48749.1| cryptochrome, DASH family [Haliscomenobacter hydrossis DSM 1100] Length = 454 Score = 321 bits (823), Expect = 1e-85, Method: Composition-based stats. Identities = 132/458 (28%), Positives = 205/458 (44%), Gaps = 30/458 (6%) Query: 7 MSV---HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQ------HGISARQ 57 M++ +VW R DLR+ DN+AL A N+ +VI VFI ++ + Sbjct: 1 MTMKRRAIVWFRQDLRLHDNEALQDALRNA-YEVIPVFIFDERTFKGKTSFGFPKTGKYR 59 Query: 58 SHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEV 117 + FI S+ +++SL + D L S + + + +F NR+ E Sbjct: 60 AQFIIESVADLRQSLRKLNSDLIVRVGKTED----ILFSMAKECKTSWIFCNRERTAEEA 115 Query: 118 RRDKLLEKRLQHRVICKSFD-DSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRS 176 R LE RL ++ +L + V+T FRK + + + + S Sbjct: 116 RIQDELENRLWSIGQEMRYNRGKMLYYTADLPFPIQHTPDVFTQFRKEVERIVPVREPLS 175 Query: 177 LPVPAIR-LTGPVTPSNIPRFFDYPFQAIDPM--------FPIGEQNALHILRKFCKEKV 227 P L+ +IP + D F GE + L+ + E Sbjct: 176 KPDRTFNPLSFEFPAGDIPSLEELGHNVDDFAKDPRAVLSFKGGETEGIKRLQYYLWETD 235 Query: 228 --YYYVEQRD-IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNE 284 Y E R+ + +S+LSP+L+ G LSP+ ++ LK+ + + E Sbjct: 236 LIKNYKETRNGLLGGDYSSKLSPWLAQGCLSPKLIYHELKKY--EAQRGANESTYWLFFE 293 Query: 285 LIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLN 344 L+WR+F+R + Y + W ++ +LQ W G TG P IDA M +L Sbjct: 294 LLWRDFFRFMGKKYGNKIFQIGGTRGQADPRWTENPQVLQKWIDGTTGVPFIDANMLELK 353 Query: 345 TIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVP 404 G+M NR R ASFLVKDL ++W++G EYF S L+D D+ SN G W + A G+D Sbjct: 354 HTGFMSNRGRQNVASFLVKDLNINWQMGAEYFESILIDYDVCSNWGNWNYIAGVGSDPRE 413 Query: 405 YFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHA 442 R FN Q KR+DP G +++HWLPEL ++P +H Sbjct: 414 -DRYFNTLTQAKRYDPHGDYVKHWLPELADLPADKVHE 450 >gi|317419959|emb|CBN81995.1| Cryptochrome DASH [Dicentrarchus labrax] Length = 521 Score = 321 bits (823), Expect = 1e-85, Method: Composition-based stats. Identities = 124/476 (26%), Positives = 210/476 (44%), Gaps = 31/476 (6%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQW------RQHGISARQSHFIY 62 + LRNDLR DN+ + A N++ ++ ++ P + + F+ Sbjct: 6 TIICLLRNDLRFQDNELFHWAQRNAEY-IVPLYCFDPRHYVGTYNYNLPKTGPFRLRFLL 64 Query: 63 ASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKL 122 S+ ++ +L KG Q + + + V+ + ++ + E+ +K Sbjct: 65 DSIRDLRNTLLSKGSNLVVRQGKPEEVVADLIKQLG---SVSAVAFHEEVTSEELNVEKG 121 Query: 123 LEKRLQH-RVICKSFDDSVLLPPGSILNHAL-QMYKVYTPFRKALIQNLVQADLRSLPVP 180 ++ +V + S L + H + ++ VYT FRKA+ + P Sbjct: 122 VKDVCAQMKVKVHTCWGSTLYHRDDLPFHHISRLPDVYTQFRKAVETQSRVRPVFPTPEQ 181 Query: 181 AIRLTGPVTPSNIPRFFDY----PFQAIDPMFP--IGEQNALHILRKFCKEKVY--YYVE 232 L + IP D P FP GE L L+ + + Y E Sbjct: 182 LKPLPSGLEEGAIPTAEDLQQTEPLTDPRSAFPCSGGESQVLARLKHYFWDTDAVATYKE 241 Query: 233 QRD-IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFY 291 R+ + + +++ +P+L++G +SPR ++++K+ + + + EL+WR+++ Sbjct: 242 TRNGLIGVDYSTKFAPWLAMGCISPRYIYHQIKQYEKERT--ANQSTYWVIFELLWRDYF 299 Query: 292 RHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHN 351 + + Y + + + I W KD L AWK+G TG P +DA MR+L G+M N Sbjct: 300 KFVGVKYGNRLFQVKGL-QDKSIPWKKDMKLFNAWKEGQTGVPFVDANMRELAMTGFMSN 358 Query: 352 RLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNP 411 R R ASFL KDL +DWR+G E+F L+D D+ SN G W ++A GND R FN Sbjct: 359 RGRQNVASFLTKDLGLDWRMGAEWFEYLLIDHDVCSNYGNWLYSAGIGNDPREN-RKFNM 417 Query: 412 TIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKN------DLSLNYPLPIV 461 QG +D G ++R W+PEL + +H P + L YP PIV Sbjct: 418 IKQGLDYDSNGDYVRQWVPELQGIKGADVHTPWTLSTAALSHAHVSLGETYPNPIV 473 >gi|261855905|ref|YP_003263188.1| deoxyribodipyrimidine photo-lyase [Halothiobacillus neapolitanus c2] gi|261836374|gb|ACX96141.1| Deoxyribodipyrimidine photo-lyase [Halothiobacillus neapolitanus c2] Length = 507 Score = 321 bits (823), Expect = 2e-85, Method: Composition-based stats. Identities = 111/481 (23%), Positives = 197/481 (40%), Gaps = 31/481 (6%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 +++VW + DLR++D+ AL A V+ ++I PE W+Q +S RQ F+ A L ++ Sbjct: 1 MNVVWFKRDLRLSDHTALARAAK--QGPVLLLYILEPELWQQPDMSERQFRFLTACLDEL 58 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYE-INEVRRDKLLEKRL 127 + + I F +++E L S + +T L+ +++ RD+ + + Sbjct: 59 KTVAQDRSIHFVIK----VGEAVEVLTSLHQKYAITALWSHQETGNGWTFARDQRVSRWC 114 Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187 Q+ I ++ + + + Q + + + + P Sbjct: 115 QYHHIPWHEPAQH-----GVVRRLANRSGWAARWYRQMKQPIAELPPVIHSIDEPSDSWP 169 Query: 188 VTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIP--AIQGTSQL 245 + + G AL +L F E+ Y P A + S+L Sbjct: 170 SPADLGWVNAE-----TAQIQSGGRSRALGLLHDFLHERGETYARAMSSPVTAFERCSRL 224 Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLN-------ELIWREFYRHLMAFY 298 SP+L+ G +S R+ + ++ + L+++P + W + L W + + Sbjct: 225 SPHLAFGTVSIREVFQAVEARKLALMMQPPTERGMWPSALRSFSGRLRWHCHFIQKLEDE 284 Query: 299 PSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITA 358 P + + E + +AW+ G TG+P++DA MR L GW++ R+R + Sbjct: 285 PRIEFCNLHPAYEGLRESEFNPAFFEAWQAGRTGYPMVDACMRALKATGWLNFRMRAMVM 344 Query: 359 SFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRF 418 SF L + WR Y D + + Q +G + RI+NP QG Sbjct: 345 SFASYHLWLHWRQPALYLARMFTDYEPGIHYSQAQMQ--SGTTGINTLRIYNPIKQGIDH 402 Query: 419 DPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478 DP+G FIR W+PEL ++ +IH P NYP PIVD +A + Y + Sbjct: 403 DPEGVFIRRWVPELMDLDRTWIHTPWLAPSPP---TNYPRPIVDEVQARKAAAEKIYQLR 459 Query: 479 K 479 K Sbjct: 460 K 460 >gi|254438241|ref|ZP_05051735.1| deoxyribodipyrimidine photolyase family [Octadecabacter antarcticus 307] gi|198253687|gb|EDY78001.1| deoxyribodipyrimidine photolyase family [Octadecabacter antarcticus 307] Length = 511 Score = 321 bits (822), Expect = 2e-85, Method: Composition-based stats. Identities = 120/470 (25%), Positives = 199/470 (42%), Gaps = 29/470 (6%) Query: 6 AMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASL 65 A + +VW + DLRI D+ L A S+A +I ++I PE W+Q S R HFI+ L Sbjct: 2 AQTPRIVWFKRDLRINDHGPLLTASQ-SNAPIIPLYIVEPEYWKQPFASRRHWHFIHDCL 60 Query: 66 LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYE-INEVRRDKLLE 124 + +L++ G D+ E + L+ V+ ++ + + + +RD +E Sbjct: 61 CDLDSALAEMGQNLIVK----VGDACEVIKELHLEHHVSDVYAHEETGNLWTYKRDIAVE 116 Query: 125 KRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL 184 K + I + P + + L+ ++ R A + + LP Sbjct: 117 KLCLNDGIA------LHTSPTNGVVRRLRSRDDWSKIRNARMAEKILPKPNMLPSFPSCR 170 Query: 185 TGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ--GT 242 + + N P F D P I + G + A+ LR F + Y+ P + Sbjct: 171 SDVLPAKNGPIFCDIP---IGTVQKGGRKQAVADLRSFLNYRSREYLYHISAPDLSEFHC 227 Query: 243 SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSG----AFSWLNELIWREFYRHLMAFY 298 S+LS +L+ G LS R+ + + L K ++ + L WR + + Sbjct: 228 SRLSAHLAWGTLSVREVAQSIIKRRSQLSPDEKKSFGRNLTAFGSRLAWRCHFVQKIEDQ 287 Query: 299 PSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITA 358 P + + E + QAW +G TG+P +DA MR L GW+ R+R + Sbjct: 288 PEIETHCMHPAFEGLREDEHNDLHFQAWARGQTGYPFVDACMRNLTAEGWITFRMRAMLV 347 Query: 359 SFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRF 418 SF L +DWR+ ++ D + + Q +G + R++NP Q Sbjct: 348 SFASYQLWLDWRVTGDHLARLFTDYEPGIHYSQLQMQ--SGVTGINTMRVYNPIKQSMEH 405 Query: 419 DPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND------LSLNYPLPIVD 462 DP G+FIR W+PEL NVP ++IH P W L +YP PI++ Sbjct: 406 DPSGSFIRKWVPELKNVPDEFIHEPWKWKKTLIDNCDFTLGQDYPEPIIE 455 >gi|326933621|ref|XP_003212899.1| PREDICTED: cryptochrome-1-like [Meleagris gallopavo] Length = 530 Score = 321 bits (822), Expect = 2e-85, Method: Composition-based stats. Identities = 133/494 (26%), Positives = 208/494 (42%), Gaps = 32/494 (6%) Query: 10 HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQ-WRQHGISARQSHFIYASLLQV 68 + R LR+ DN AL AA +S+ V V+I I A + HF+ SL + Sbjct: 5 TIHLFRKGLRLHDNPALLAALQSSEV-VYPVYILDRAFMTSSMHIGALRWHFLLQSLEDL 63 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128 + SL Q G Q + + + + +T++ + + E + + + Sbjct: 64 RSSLCQLGSCLLVIQG----EYDAVVRDHVQKWNITQVTLDAEMEPFYKEMEANIRALGE 119 Query: 129 HRV-ICKSFDDSVLLPPGSILN-HALQMYKVYTPFRKAL-IQNLVQADLRSLPVPAIRLT 185 S L IL + Y F L + + +R+L + Sbjct: 120 ELGFEVLSLMGHSLYNTQRILELNGGTPPLTYKRFLHILSLLGDPEMPIRNLTAEDFQRC 179 Query: 186 GPVTPS-------NIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEK---VYYYVEQRD 235 P +P P ++I P + GE L L + ++ V + + + Sbjct: 180 SPPELCLAECYRVPLPTDLKIPPESISP-WRGGESEGLQRLEQHLADRSGWVASFTKPKT 238 Query: 236 IPA--IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRH 293 +P + T+ LSPY S+G LS R + RL + S +L+WREF+ Sbjct: 239 VPNSLLPSTTGLSPYFSMGCLSVRSFFYRLSNIYAQAK-HHSLPPVSLQGQLLWREFFYT 297 Query: 294 LMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRL 353 + + P+ P +I W +D+ L WK TGFP IDA M QL GW+H+ Sbjct: 298 VASATPNFTKM-AGNPICLQIRWYEDAERLHRWKTAQTGFPWIDAIMTQLRQEGWIHHLA 356 Query: 354 RMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPT 412 R A FL + DL + W G + F LLD D + N G W W S Y RIF P Sbjct: 357 RHAAACFLTRGDLWISWEEGMKVFEELLLDADYSINAGNWMW-LSASAFFHHYTRIFCPV 415 Query: 413 IQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND------LSLNYPLPIVDHKKA 466 G+R DP+G +IR +LP L N P++YI+ P + ++ + +YP P+VDHK+A Sbjct: 416 RFGRRTDPEGQYIRKYLPILKNFPSKYIYEPWTASEEEQKQAGCIIGRDYPFPMVDHKEA 475 Query: 467 CHHTLNQYYAAKKQ 480 H L +++ Sbjct: 476 SDHNLQLMKQVREE 489 >gi|110825715|sp|Q38JU2|CRYD_SOLLC RecName: Full=Cryptochrome DASH, chloroplastic/mitochondrial; AltName: Full=Cryptochrome-3; Flags: Precursor gi|98467788|gb|ABB01166.2| cryptochrome 3 [Solanum lycopersicum] Length = 577 Score = 321 bits (822), Expect = 2e-85, Method: Composition-based stats. Identities = 133/488 (27%), Positives = 222/488 (45%), Gaps = 48/488 (9%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGI------SARQSHFIY 62 V +VW RNDLR+ DN+AL A +S+A ++ V+ P + A ++ FI Sbjct: 79 VAIVWFRNDLRVLDNEALLRAWVSSEA-ILPVYCVDPRLFGTTHYFGMPKTGALRAQFII 137 Query: 63 ASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKL 122 L ++++L ++G+ D + S + ++ +++ EV+ +K+ Sbjct: 138 ECLNDLKRNLVKRGLDLLIQHGKPED----IVPSLAKAYKAHTVYAHKETCSEEVKVEKM 193 Query: 123 LEKRLQHRV-----------------ICKSFDDSVLLPPGSILNHALQMYKVYTPFRKAL 165 + + LQ V + S + + + VYT FRK++ Sbjct: 194 VTRNLQKLVSPSSGGIGNDPGSGNTTKLELVWGSTMYHIDDLPFDCESLPDVYTQFRKSV 253 Query: 166 IQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQ----AIDPMFPIGEQNALHILRK 221 + LP ++P+ + Q + F GE AL + Sbjct: 254 EYKSKVRNCTKLPTSFGPPPEVGDWGHVPQVSELGLQQEKVSKGMNFVGGESAALGRVHD 313 Query: 222 FCKEKV--YYYVEQRD-IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGA 278 + +K Y E R+ + +++ SP+L+ G LSPR + +K + L Sbjct: 314 YFWKKDLLKVYKETRNGMLGADYSTKFSPWLASGSLSPRFIYEEVKRYEKERL--SNDST 371 Query: 279 FSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDA 338 + L ELIWR+++R L ++ + P I W++D + AW++G TG+P+IDA Sbjct: 372 YWVLFELIWRDYFRFLSIKLANLLF-QAGGPQKVNINWSQDQTMFDAWRRGQTGYPLIDA 430 Query: 339 AMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAAST 398 M++L G+M NR R I SFLV+D+ +DWR+G E+F + LLD D SN G W + A Sbjct: 431 NMKELAATGYMSNRGRQIVCSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGV 490 Query: 399 GNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPL 458 GND R F+ Q + +DP+G F+ +WLPEL +P + H+P + Y Sbjct: 491 GNDPRE-DRYFSIPKQAQNYDPEGEFVAYWLPELRALPREKRHSP---------GMMYLN 540 Query: 459 PIVDHKKA 466 PIV K Sbjct: 541 PIVALKHG 548 >gi|149637939|ref|XP_001508613.1| PREDICTED: similar to cryptochrome 1 [Ornithorhynchus anatinus] Length = 577 Score = 321 bits (822), Expect = 2e-85, Method: Composition-based stats. Identities = 109/449 (24%), Positives = 179/449 (39%), Gaps = 38/449 (8%) Query: 59 HFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVR 118 F+ L + +L + + + + + KL E Sbjct: 14 RFLLQCLEDLDANLRKLNSRLFVIRG----QPADVFPRLFKEWNIAKLSIEYDSEPFGKE 69 Query: 119 RDKLLEKRLQHRVICKSFD-DSVLLPPGSILNHALQMYKVYTPFRKALIQNLV-QADLRS 176 RD ++K + L L+ +++ P Q L+ + D + Sbjct: 70 RDAAIKKLASEAGVEVIVRISHTLYE----LDKIIELNGGQPPLTYKRFQTLISRMDPLA 125 Query: 177 LPVPAI------RLTGPVTPSNIPR-----FFDYPFQA---IDPMFPIGEQNALHILRKF 222 +PV I + P++ + + + F ++P GE AL L + Sbjct: 126 MPVETITAEVMGKCMTPLSDDHDEKYGVPSLEELGFDTDGLPSAVWPGGETEALTRLERH 185 Query: 223 CKEKVYYYVEQRDIPAIQGT----SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGA 278 + K + +R + LSPYL G LS R + +L + + + K S Sbjct: 186 LERKAWVANFERPRMNANSLLASPTGLSPYLRFGCLSCRLFYFKLTDLYKKVK-KNSSPP 244 Query: 279 FSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDA 338 S +L+WREF+ P + P +I W+++ L W +G TGFP IDA Sbjct: 245 LSLYGQLLWREFFYTAATSNPRFDKMEG-NPICVQIPWDRNPEALAKWAEGRTGFPWIDA 303 Query: 339 AMRQLNTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAAS 397 M QL GW+H+ R A FL + DL + W G + F LLD D + N G W W S Sbjct: 304 IMTQLRQEGWIHHLARHAVACFLTRGDLWISWEEGMKVFEELLLDADWSVNAGSWMW-LS 362 Query: 398 TGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLD------KND 451 + +F + P G+R DP G +IR +LP L P +YI+ P + + K Sbjct: 363 CSSFFQQFFHCYCPVGFGRRTDPNGDYIRRYLPVLRGFPAKYIYDPWNAPEGIQKAAKCI 422 Query: 452 LSLNYPLPIVDHKKACHHTLNQYYAAKKQ 480 + +NYP P+V+H +A + + +Q Sbjct: 423 IGVNYPKPMVNHAEASRLNIERMKQIYQQ 451 >gi|271963152|ref|YP_003337348.1| deoxyribodipyrimidine photo-lyase [Streptosporangium roseum DSM 43021] gi|270506327|gb|ACZ84605.1| Deoxyribodipyrimidine photo-lyase [Streptosporangium roseum DSM 43021] Length = 425 Score = 321 bits (822), Expect = 2e-85, Method: Composition-based stats. Identities = 141/457 (30%), Positives = 218/457 (47%), Gaps = 37/457 (8%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M +V DLR+ D+ A AA +V+ +F+ P H ++ F+ SL Sbjct: 1 MDTVIVLFNRDLRVHDHPA-LAAACADAWRVVPLFVIDPGVPGGH-----RAGFLAESLD 54 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 ++ SL ++G Q +++ + ++ + RR++ L + Sbjct: 55 DLRGSLRERGGDLVVRQGDPVAETLR----LARELPAQAVYVSADVSALAQRRERRLAEE 110 Query: 127 LQ-HRVICKSFDDSVLLPPGSI-LNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL 184 + HR+ ++F ++PP ++ + Y+V+TP+ + + L + I Sbjct: 111 CERHRMEFRAFPGVTIVPPDALRPSGGGDHYRVFTPYWRVWSGQRRREVLGAPAKVRIPE 170 Query: 185 TGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244 P + + +F GE A +R++ K V Y + D A TS+ Sbjct: 171 GLEAGPLPVAGHEPHG------LFRGGETVARERMRQWLKYCVEDYADGHDDLAGNRTSK 224 Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304 LSPYL G LSP + ++ +L WR+F+ + +P + Sbjct: 225 LSPYLRFGCLSPLEL------------ESLSENGDDFVRQLCWRDFFHQVTRAFPRINRD 272 Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364 + P + EW D QAWK+G TG PI+DA MRQL GWMHNR RM+T+SFLV+ Sbjct: 273 -DYRPQGQ--EWRDDEDAAQAWKEGRTGVPIVDAGMRQLLAEGWMHNRARMVTSSFLVRR 329 Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424 L VDWR+G E+F LLDGD+++N G WQW A TGND+ P RI NP Q +RFDP+G + Sbjct: 330 LRVDWRVGAEHFFDLLLDGDVSNNYGNWQWVAGTGNDTRP-NRIVNPVRQARRFDPEGEY 388 Query: 425 IRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIV 461 IR +LPEL+ VP + I+ P YP P+V Sbjct: 389 IRRYLPELDAVPVKMIYEPWRMSTGIR---GYPAPLV 422 >gi|224085023|ref|XP_002198533.1| PREDICTED: cryptochrome 4 [Taeniopygia guttata] Length = 527 Score = 321 bits (822), Expect = 2e-85, Method: Composition-based stats. Identities = 133/494 (26%), Positives = 205/494 (41%), Gaps = 33/494 (6%) Query: 10 HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQW-RQHGISARQSHFIYASLLQV 68 + R +LR+ DN L AA +S+A + V+I I A + +F+ SL + Sbjct: 5 TIHLFRKELRLHDNPVLLAALESSEA-LYPVYILDRAFLTSSMHIGALRWNFLLQSLEDL 63 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR-L 127 K+L Q G Q + L + + +T++ + + E + +++ Sbjct: 64 HKNLGQLGSCLLVIQG----EYEIVLRDHIQKWNITQVTLDAEMEPFYKEMEANIQRLGA 119 Query: 128 QHRVICKSFDDSVLLPPGSILN-HALQMYKVYTPFRKAL---------IQNLVQADLRSL 177 + S L IL+ + Y F L ++NL D + Sbjct: 120 ELGFEVLSLVSHSLYNTQRILDLNGGSPPLTYKRFLHILSLLGDPELPVRNLTAEDFQRC 179 Query: 178 PVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVY--YYVEQRD 235 P L P + GE L L + ++ + + + R Sbjct: 180 RAPEPGLAECYRVPLPVDLKISPESLSP--WRGGETEGLRRLEQHLIDQGWVTSFAKPRT 237 Query: 236 IPA--IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRH 293 P + T+ LSPY S+G LS R + RL + S +L+WREF+ Sbjct: 238 SPNSLLPSTTGLSPYFSMGCLSVRTFFYRLSNIYAQAK-HHSLPPVSLQGQLLWREFFYT 296 Query: 294 LMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRL 353 + + P+ P +I W KD+ L WK TGFP IDA M QL GW+H+ Sbjct: 297 VASATPNFT-QMAGNPICLQISWYKDAERLHKWKTAKTGFPWIDAIMTQLRQEGWIHHLA 355 Query: 354 RMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPT 412 R A FL + DL + W G + F LLD D + N G W W S Y RIF P Sbjct: 356 RHAVACFLTRGDLWISWEEGMKVFEELLLDADYSINAGNWMW-LSASAFFHQYTRIFCPV 414 Query: 413 IQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND------LSLNYPLPIVDHKKA 466 GKR DPQG +IR +LP L N P++YI+ P + ++ + +YP P+V+HK+A Sbjct: 415 RFGKRTDPQGNYIRKYLPILKNFPSKYIYEPWTASEEEQKLAGCIIGQDYPFPMVNHKEA 474 Query: 467 CHHTLNQYYAAKKQ 480 H L +++ Sbjct: 475 SDHNLQLMKQVREE 488 >gi|147902555|ref|NP_001084438.1| cryptochrome DASH [Xenopus laevis] gi|82239825|sp|Q75WS4|CRYD_XENLA RecName: Full=Cryptochrome DASH gi|41688006|dbj|BAD08601.1| cryptochrome dash [Xenopus laevis] Length = 523 Score = 321 bits (822), Expect = 2e-85, Method: Composition-based stats. Identities = 127/477 (26%), Positives = 214/477 (44%), Gaps = 33/477 (6%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATP------EQWRQHGISARQSHFIY 62 V + LRNDLR+ DN+ L+ A N+D +++ ++ P + + F+ Sbjct: 7 VIICLLRNDLRLHDNEVLHWAHRNAD-QIVPLYCFDPRHYVGTHYFNFPKTGPHRLKFLL 65 Query: 63 ASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQR-VTKLFYNRQYEINEVRRDK 121 S+ ++ +L +KG + E ++ Q V+ + + + E + Sbjct: 66 ESVRDLRITLKKKGSNLLLRRGKPE----EVIEDLVKQLGNVSAVTLHEEATKEETDVES 121 Query: 122 LLEKRL-QHRVICKSFDDSVLLPPGSIL-NHALQMYKVYTPFRKALIQNLVQADLRSLPV 179 +++ + + ++F S L + H + VYT FRKA+ +P Sbjct: 122 AVKQACTRLGIKYQTFWGSTLYHREDLPFRHISSLPDVYTQFRKAVETQGKVRPTFQMPD 181 Query: 180 PAIRLTGPVTPSNIPRFFDY----PFQAIDPMFP--IGEQNALHILRKFCKEKV--YYYV 231 L + ++P D+ P FP GE AL L + E Y Sbjct: 182 KLKPLPSGLEEGSVPSHEDFDQQDPLTDPRTAFPCSGGESQALQRLEHYFWETNLVASYK 241 Query: 232 EQRD-IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREF 290 + R+ + + +++ +P+L++G +SPR + ++ + + + + EL+WR++ Sbjct: 242 DTRNGLIGLDYSTKFAPWLALGCVSPRYIYEQIGKYEKERT--ANQSTYWVIFELLWRDY 299 Query: 291 YRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMH 350 +R + Y + + I W +D L AWK+G TG P +DA MR+L G+M Sbjct: 300 FRFVALKYGRRIFFLRGLQDKD-IPWKRDPKLFDAWKEGRTGVPFVDANMRELAMTGFMS 358 Query: 351 NRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFN 410 NR R ASFL KDL +DWR+G E+F L+D D+ SN G W ++A GND R FN Sbjct: 359 NRGRQNVASFLTKDLGIDWRMGAEWFEYLLVDYDVCSNYGNWLYSAGIGNDPREN-RKFN 417 Query: 411 PTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKN------DLSLNYPLPIV 461 QG +D G +IR W+PEL + H P + + + L YP PIV Sbjct: 418 MIKQGLDYDSGGDYIRLWVPELQQIKGGDAHTPWALSNASLAHANLSLGETYPYPIV 474 >gi|145346348|ref|XP_001417651.1| predicted protein [Ostreococcus lucimarinus CCE9901] gi|144577879|gb|ABO95944.1| predicted protein [Ostreococcus lucimarinus CCE9901] Length = 562 Score = 320 bits (821), Expect = 3e-85, Method: Composition-based stats. Identities = 137/560 (24%), Positives = 210/560 (37%), Gaps = 84/560 (15%) Query: 1 MKATT---AMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQ 57 M A + + L+W R LR+ DN AL A + + VF+ P + + A + Sbjct: 1 MTAPSVSNGTTRSLIWFRKALRVHDNPALAAGIARAKSA-QPVFVLDPWFCKPSRVGANR 59 Query: 58 SHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEV 117 F+ SL + +L ++G L C +V + + E Sbjct: 60 MRFLLQSLRDLDATLRERGSSLLVLHGEPRV----VLPRACKTWKVDLVTWEHDIEPYAK 115 Query: 118 RRDKLLEKRLQ-HRVICKSFDDSVLLPPGSILNHA-LQMYKVYTPFRKALIQNLVQ---- 171 RD + L+ V C S L +L + Y+ F K + + Sbjct: 116 MRDTAVRGALERAGVECASSSGHTLYDVEEMLAKCHGKPPTTYSQFLKIVDKMGAPAAAL 175 Query: 172 ADLRSLPVP--------AIRLTGPVTPSNIPRFFDYPFQAI--DPMFP--IGEQNA---- 215 +++P P + G IP + ++A+ D F GE Sbjct: 176 DAPKAMPAPFTGTAEETKELVAGVADAYGIPTLEELGYEAMHDDEGFQAIGGETEGLRRL 235 Query: 216 ---------------------------------------LHILRKFCKEKVYYYVEQRDI 236 + K D+ Sbjct: 236 RRQLSRTEWVHTFQKPDTNPTTLFHALGAKKPKPKSPFEIAARDAGSKNDATNTAANSDM 295 Query: 237 PAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSG--AFSWLNELIWREFYRHL 294 T+ LSPY+ G +SPR ++ L K + S + +L+WREFY + Sbjct: 296 LMTPSTTALSPYMKFGCVSPRVFYHELNAVLAKFEGKGQPSQPPVSLMGQLMWREFYYLV 355 Query: 295 MAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLR 354 A P+ + P +I WNKD L AW+ TGFP IDAAM QL GW+H+ R Sbjct: 356 GAGTPNFDKMEG-NPICRQIPWNKDRELFAAWENAQTGFPWIDAAMTQLRLEGWIHHLAR 414 Query: 355 MITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTI 413 A FL + DL V W G + F L+D D A NNG W W S YFR++ P Sbjct: 415 HAVACFLTRGDLFVHWEWGRDTFDRDLVDADWALNNGNWMW-LSCSCFFYQYFRVYGPHS 473 Query: 414 QGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWL------DKNDLSLNYPLPIVDHKKAC 467 K++D G +++H+LP L N+P +Y++ P + ++YP PIVDH A Sbjct: 474 FAKKYDKDGAYVKHYLPVLKNMPAKYVYEPWLAPLDVQKKAGCVVGVDYPAPIVDHATAS 533 Query: 468 HHTLN----QYYAAKKQSLL 483 ++ Y A K + + Sbjct: 534 KACIDKIATAYAAHKDATAV 553 >gi|116072905|ref|ZP_01470170.1| Deoxyribodipyrimidine photolyase [Synechococcus sp. BL107] gi|116064431|gb|EAU70192.1| Deoxyribodipyrimidine photolyase [Synechococcus sp. BL107] Length = 496 Score = 320 bits (821), Expect = 3e-85, Method: Composition-based stats. Identities = 121/477 (25%), Positives = 202/477 (42%), Gaps = 35/477 (7%) Query: 8 SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67 ++ +VW + DLR D++ L+ A V+ +++ PE W+Q S+RQ F SL+ Sbjct: 3 ALQIVWFKRDLRTVDHRPLFEASKCG--PVLPLYVVEPELWQQPDSSSRQWLFCRESLID 60 Query: 68 VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEV-RRDKLLEKR 126 +Q++L++ G + D + L+ Q + L+ + + + +RDK + Sbjct: 61 LQRALAEFGQPLVVRRG----DVADVLERARRQFGIDALWSHEETGNDWTYQRDKRVAAW 116 Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 + I + P + L+ + + + + L +LP A G Sbjct: 117 AKQHGIPWT------EIPQFGVTRRLKSRNGWAKRWETQMAEPITQPLTALPRLADLDPG 170 Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIP--AIQGTSQ 244 + P G + R F ++V Y P A G S+ Sbjct: 171 AIPDLPHGSMAPDPCPHRQL---GGRRQGELEFRDFLNQRVERYCSSISSPNKAFTGCSR 227 Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304 LS YL+ G LS R+ + + G S+ + L W + + PS+ Sbjct: 228 LSAYLTWGCLSMREVLQQSRTMQ-------GRGVNSFGSRLHWHCHFIQKLEDEPSIEF- 279 Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364 + F P I + + LQAW +G TG P +DA MR L GW++ R+R + SF + Sbjct: 280 QDFHPLMRGIR-DSNQDHLQAWAEGRTGVPFVDACMRALRAHGWINFRMRAMLMSFASYN 338 Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424 L + WR + Q +D + + Q +G+ S+ RI+NP QG+ DP+G F Sbjct: 339 LWLPWRQSGLHLARQFVDYEPGIHWSQCQMQ--SGSTSINTIRIYNPIKQGRDHDPEGRF 396 Query: 425 IRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481 IRHW PEL VP YIH P +L P PIVD + ++ +A ++ + Sbjct: 397 IRHWCPELREVPAIYIHEPW------ELGGGMPAPIVDVTTSMQAAKDRIWAVRRSA 447 >gi|189184449|ref|YP_001938234.1| deoxyribodipyrimidine photolyase, DNA photolyase [Orientia tsutsugamushi str. Ikeda] gi|189181220|dbj|BAG41000.1| deoxyribodipyrimidine photolyase, DNA photolyase [Orientia tsutsugamushi str. Ikeda] Length = 505 Score = 320 bits (821), Expect = 3e-85, Method: Composition-based stats. Identities = 141/503 (28%), Positives = 231/503 (45%), Gaps = 38/503 (7%) Query: 5 TAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGIS-ARQSHFIYA 63 + +VWLR +LR+ DNK A +S K+I +FI + R+ F+ Sbjct: 2 NMKKISIVWLRRNLRLEDNKPFAEALKSSK-KIIPIFIFDTTILQNFSNPLDRRLSFLAN 60 Query: 64 SLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLL 123 ++ + L + + +S+E + + + ++ + +Y+ V RD+ + Sbjct: 61 TIYNLNSELQELEGNLLVL----YGNSVEIIPKLIEKLNIQTIYADEEYDPENVIRDQKI 116 Query: 124 EKRLQHRVI--CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPA 181 L+ + D +LL PGSI+ H Q Y Y P+ A Q L + + + Sbjct: 117 TNLLEFNGKSKLELVCDHLLLKPGSIVTHKKQYYMRYNPYNTAFKQYL-RKNCSCIERSN 175 Query: 182 IRLTGPVTPSNIPRFFDYPFQ-------AIDPMFPIGEQ----------NALHILRKFCK 224 RL + + A + + IG A +IL F + Sbjct: 176 YRLDHRLVSLESIDLSSLNLKIINLNHGASEILNQIGYTYQKDNIWQPIKAKNILNNFIQ 235 Query: 225 EKVYYYVEQR---DIPAIQGTSQLSPYLSIGVLSPRQCWNRL-----KEEFVDLLIKPKS 276 + Y ++ + +S +SPYL G++S R+C+++ K D I Sbjct: 236 NNITSYRTNNTNQNLLYLNNSSTISPYLRFGLVSIRECFSKAIAADSKALITDEAIGKTE 295 Query: 277 GAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPII 336 W++ LI REFY L+ +P+ + + I W KD + + +G TG+P+I Sbjct: 296 KEKGWIDGLIHREFYASLLFRFPNTVSEEFQDKYRNNIPWEKDLEIYCKFTEGKTGYPMI 355 Query: 337 DAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAA 396 DA+++QL GWMHN R I A+F K LL+DWR+GE +F L+D +LASN G WQWAA Sbjct: 356 DASIKQLLRDGWMHNLARTIVANFFTKYLLLDWRLGEHFFSQYLMDYELASNVGSWQWAA 415 Query: 397 STGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNY 456 S G D + R+F P QG++FD + +I+ +LP L NV + IH H + NY Sbjct: 416 SCGTDMEHFVRMFCPFAQGRKFDHEAKYIKKYLPNLENVSAKVIHDVHF----SKKYPNY 471 Query: 457 PLPIVDHKKACHHTLNQYYAAKK 479 PI+D++ + + N + KK Sbjct: 472 LTPIIDYQLSKDKSSNFFKQIKK 494 >gi|78777808|ref|YP_394123.1| deoxyribodipyrimidine photolyase [Sulfurimonas denitrificans DSM 1251] gi|78498348|gb|ABB44888.1| Deoxyribodipyrimidine photo-lyase type I [Sulfurimonas denitrificans DSM 1251] Length = 445 Score = 320 bits (820), Expect = 3e-85, Method: Composition-based stats. Identities = 132/474 (27%), Positives = 211/474 (44%), Gaps = 41/474 (8%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 ++W R DLR+ DN L +V+ +FI ++ ++ FI+ LL+++ Sbjct: 4 VLWFRRDLRVKDNPLLTL-----GGEVLPIFIFDENILKELSQDDKRVTFIFHYLLKLKS 58 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130 L G+ + + + E L + ++ + Y+ RD + +L Sbjct: 59 DLQHIGLDLKIFYGTP-EAVFEHLSKF------DEVVASGDYDSYAKSRDLHISHKLH-- 109 Query: 131 VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTP 190 + D+ + P IL Y V+TPF K L DL+ + L G + Sbjct: 110 --FRYLHDTYIFKPKEILKDDGSPYFVFTPFYKKARVALHVKDLQEKKIAQNILIG--SD 165 Query: 191 SNIPRFFDYPFQAIDPMFP-IGEQN-------ALHILRKFCKEKVYYYVEQRDIPAIQGT 242 D + IG + L F K+ + Y + RD + + Sbjct: 166 YEGITKVDIGITKLSLAIESIGFKAQNLNIIAPQKKLENF-KKNISKYSQMRDFLDVDIS 224 Query: 243 SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVC 302 S LS L G +S R+ + +K + ++ +LI+R+FY + + P V Sbjct: 225 SSLSVDLRFGTISIREVLLEV--------LKLAEVSEPFIRQLIFRDFYAYALFHTPHV- 275 Query: 303 MGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLV 362 + + IE D A+ TG PI+DA +R+L G+MHNR+RM+ ASF Sbjct: 276 ESENYKYSFNGIE---DKEKFIAFCSAKTGVPIVDAGVRELLKTGYMHNRVRMVVASFFT 332 Query: 363 KDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQG 422 KDLL+ W+ GE +F LLD D ASN WQW+A TG D PYFRIFNP +Q K+FD + Sbjct: 333 KDLLLPWQWGERFFAEHLLDYDKASNVLSWQWSAGTGVDPQPYFRIFNPYLQSKKFDKEA 392 Query: 423 TFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYA 476 +I+ ++ EL+ + + IH L + +YP PIV HK+A + + Sbjct: 393 LYIKRYVSELSTIEIKNIHKEEYLLCADI--KDYPKPIVTHKEASKRAVELFKK 444 >gi|56807956|ref|ZP_00365772.1| COG0415: Deoxyribodipyrimidine photolyase [Streptococcus pyogenes M49 591] Length = 381 Score = 320 bits (820), Expect = 4e-85, Method: Composition-based stats. Identities = 145/389 (37%), Positives = 206/389 (52%), Gaps = 17/389 (4%) Query: 87 FDDSIEWLDSYCLQQ-RVTKLFYNRQYEINEVRRDKLLEKRLQHRVI-CKSFDDSVLLPP 144 + D + + Q T +++N RD+ + + I ++ D L Sbjct: 2 YGDLMTCFEQLLTQLKDWTDVYFNYDESGYGRLRDQKAAQFFKKNGIAVHTYQDHYLHGS 61 Query: 145 GSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAI 204 I+N + Q YKV+TP+ + + ++ + + R TP ++ R + F+ Sbjct: 62 QEIINQSGQPYKVFTPYYRXWQNYPKETPIK-VELSQGRWLNLETPDDVLRTVE-SFKDE 119 Query: 205 DPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLK 264 A L +F ++++ Y RD PA GTS+LSP+L IG + R ++ ++ Sbjct: 120 KYQDVATFDEASKQLNRFIQDQLAAYHANRDFPAQLGTSRLSPFLRIGAIGIRTVYHAVR 179 Query: 265 EEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQ 324 + G ++L EL WR+FY + YP +P +IEW + Q Sbjct: 180 QA------PNSLGQATFLKELAWRDFYNMVYVAYPDQ-KTQPIQKAFSQIEWVNNPDWFQ 232 Query: 325 AWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGD 384 WK+G TG+PI+DAAM QL GWMHNRLRMI ASFL KDLL DWR+GE+YF QL+D D Sbjct: 233 LWKEGKTGYPIVDAAMLQLQKTGWMHNRLRMIVASFLTKDLLCDWRLGEQYFQQQLIDYD 292 Query: 385 LASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPH 444 ASN GGWQWAASTG D+VPYFRIFNP QGKRFDP+G FI+ +LP+L +VP +Y+H P Sbjct: 293 AASNIGGWQWAASTGTDAVPYFRIFNPVTQGKRFDPKGEFIKAYLPQLEHVPEKYLHEPW 352 Query: 445 SWLD------KNDLSLNYPLPIVDHKKAC 467 + +Y PIVDH K Sbjct: 353 KMPKNLQESVSCIIGTDYAQPIVDHAKQR 381 >gi|219118654|ref|XP_002180095.1| cryptochrome photolyase family 1 [Phaeodactylum tricornutum CCAP 1055/1] gi|217408352|gb|EEC48286.1| cryptochrome photolyase family 1 [Phaeodactylum tricornutum CCAP 1055/1] Length = 550 Score = 320 bits (819), Expect = 4e-85, Method: Composition-based stats. Identities = 135/516 (26%), Positives = 211/516 (40%), Gaps = 53/516 (10%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISAR----QSHFIYAS 64 V + W RN LR DN L AC S++ ++ +++ PE R +++F+ S Sbjct: 11 VAIHWFRNGLRFHDNPCLLDACQKSES-LLPIYVVDPEFPFAQTAGCRAGTIRANFLLES 69 Query: 65 LLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDK--- 121 + +V + L + G S E L + LFY ++ +D Sbjct: 70 INEVDEKLRKMGSQLVV----VLGKSHEVLPEIVATTQAKALFYEQEAAAPVREQDAETI 125 Query: 122 -LLEKRLQHRVI-----CKSFDDSVLLPPGSIL--NHALQMYKVYTPFRKALIQNLVQAD 173 ++ RL+ +++ L P L Y F K + V + Sbjct: 126 QAIKNRLKRDGKNYECKFEAYATHTLHPMERYLAQCKDHTAPSTYGSFTKIFNKMSVAKE 185 Query: 174 L------RSLPVPAIRLTGP--VTPSNIPRFFDYPFQAIDP----------MFPIGEQNA 215 + SLP +++L +P D + A F GE A Sbjct: 186 VNEVKEVPSLPNKSVKLLEKSFAEALRMPTLKDLGYAAAADDMKNSGKGGYAFAGGENAA 245 Query: 216 LHILRKFCKEKVY--YYVEQRDIPA---IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDL 270 + +L K + + + + P T+ LSPY+ G +SPR+ ++ L + + Sbjct: 246 IELLAKNMARSQWVATFEKPKTSPNDATRPSTTALSPYVKHGCISPRRFYHELSKVYSKY 305 Query: 271 LIKPKS-GAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQG 329 K S S +L+WR+F + P+ P +I W+ D LL AWK Sbjct: 306 NSKETSKPPVSLHGQLMWRDFNYLVGYSTPNFDKMID-NPIARQIPWDDDPDLLLAWKMS 364 Query: 330 YTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASN 388 TG+P IDA M QL GW+H+ R A FL + DL W G F L+D D + N Sbjct: 365 KTGYPYIDAIMTQLRETGWIHHLARHSVACFLTRGDLWQSWEDGATVFEEYLIDADWSIN 424 Query: 389 NGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLD 448 N WQW S YFR ++P GK+ DP G +IR WLP+ ++P +YI+ P Sbjct: 425 NFNWQW-LSCTAHFYQYFRCYSPIAFGKKTDPNGDYIRKWLPQFKDMPAKYIYEPWEAPI 483 Query: 449 KND------LSLNYPLPIVDHKKACHHTLNQYYAAK 478 + + NYP PIVDHK + +++ A Sbjct: 484 ELQKKVGVIVGENYPHPIVDHKLVSKNNMSRMKEAY 519 >gi|294084365|ref|YP_003551123.1| deoxyribodipyrimidine photolyase [Candidatus Puniceispirillum marinum IMCC1322] gi|292663938|gb|ADE39039.1| deoxyribodipyrimidine photolyase [Candidatus Puniceispirillum marinum IMCC1322] Length = 515 Score = 319 bits (818), Expect = 5e-85, Method: Composition-based stats. Identities = 114/487 (23%), Positives = 197/487 (40%), Gaps = 36/487 (7%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 +H+VW + DLR+ D+ L AA V+ +++ P W Q +S R F+ +L + Sbjct: 1 MHVVWFKKDLRVWDHAPLVAASAAG--AVLPIYVVEPALWAQPDMSYRHYAFLGETLASL 58 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYE-INEVRRDKLLEKRL 127 +SL++ G + D L + +T L+ + + RD +++ Sbjct: 59 DESLTKLGQPLVIY----AGDMPSVLAGIHQKYGITALYSHEETGNGWTYARDLAVQEWC 114 Query: 128 Q-HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 + H F + P L+ + + ++Q V L I+ Sbjct: 115 KDHHCPWHEFAQYGVHRP-------LRSRRGWAGKWDKMMQADVVPAPDHLSSVGIKGVP 167 Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIP--AIQGTSQ 244 + S + D + G A+ +L+ F + Y + P A S+ Sbjct: 168 LPSASALGLVDD----ECNERQKGGRNEAIALLKSFLASRGQKYRYEMSSPVTAADSCSR 223 Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWL-------NELIWREFYRHLMAF 297 LS +L+ G +S R+ + + + + +W + L W + + Sbjct: 224 LSAHLAFGAVSLREVFQASRRRQMAIRDSGTGNKRAWQNALKSFESRLHWHCHFMQKLED 283 Query: 298 YPSVCMGKPFIPWTEKIEWNKDSHL--LQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRM 355 P++ +PF E ++ L AW +G TG+P++DA MR L GW+ R+R Sbjct: 284 EPAIEF-RPFHSAYESLDKTHADAASRLTAWVEGRTGYPLVDAVMRSLTATGWLTFRMRA 342 Query: 356 ITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQG 415 +T SF L +DWR + +D + + Q + + RI+NP Q Sbjct: 343 MTMSFASYHLWLDWRSPARHLARSFIDYEPGIHYSQCQMQSGIT--GINTIRIYNPIKQS 400 Query: 416 KRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYY 475 + DPQG FIR W+PEL ++ IH P D+ +YP PIVD K A Q + Sbjct: 401 QDQDPQGIFIRRWVPELRHISDNLIHTPWIRPDQA---PDYPAPIVDEKIARKSASQQMH 457 Query: 476 AAKKQSL 482 +K S+ Sbjct: 458 DIRKSSM 464 >gi|307292892|ref|ZP_07572738.1| DNA photolyase FAD-binding [Sphingobium chlorophenolicum L-1] gi|306880958|gb|EFN12174.1| DNA photolyase FAD-binding [Sphingobium chlorophenolicum L-1] Length = 458 Score = 319 bits (818), Expect = 6e-85, Method: Composition-based stats. Identities = 135/456 (29%), Positives = 214/456 (46%), Gaps = 36/456 (7%) Query: 34 DAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEW 93 + VI V++ + RQ + +++ SL + SL +KG Q DS+E Sbjct: 27 EGPVIPVYVLDDQAPRQWKMGGASRWWLHHSLANLDASLREKGSRLILRQG----DSVEQ 82 Query: 94 LDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQ 153 L + + ++ YE +K + KRL D +LLPPG + Sbjct: 83 LVAIAEEVGAGRVHALHHYEPWWRNAEKAVAKRLD----LCLHDGGLLLPPGVVRTGGGS 138 Query: 154 MYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMF----- 208 Y++YTPF +A+++ + A P R+ P D+ + P + Sbjct: 139 SYRIYTPFARAVMEQMPPATPVRAPS---RIDAPSDWPKSDSLADWGLLPVKPDWAVAFS 195 Query: 209 ---PIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKE 265 GE A + F E Y R++P+ +GTS+LSP+L G +SP W+R+ Sbjct: 196 SDWTPGEAGARTNVAAFLDEA-ADYDVARNLPSQEGTSRLSPHLHFGEVSPAYVWHRI-- 252 Query: 266 EFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWN---KDSHL 322 + A ++L ELIWR++ + P+ P + + W + Sbjct: 253 ------VGTGDDATTFLKELIWRDYAHTQIWAMPTYGSENA-RPAFDAMPWRDLREAGED 305 Query: 323 LQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLD 382 +AW+ G TG+PI+DA MRQL GWMHNR+RMI ASFL+K LL+DWR G +F L+D Sbjct: 306 FKAWQSGRTGYPIVDAGMRQLWATGWMHNRVRMIAASFLIKHLLIDWRHGARWFWDTLVD 365 Query: 383 GDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHA 442 A+N+ WQW A +G D+ + RI P Q ++FD G +IR W+PEL ++ ++IH Sbjct: 366 ASYANNSVNWQWVAGSGVDANIFSRIMAPLTQSEKFDAAG-YIRTWVPELAHLDDEHIHD 424 Query: 443 PHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478 P + + +YP + H++ L + K Sbjct: 425 PDAHGIRP---PDYPAKRIGHREGRERALAAWGHGK 457 >gi|326912139|ref|XP_003202411.1| PREDICTED: cryptochrome-1 [Meleagris gallopavo] Length = 611 Score = 319 bits (817), Expect = 7e-85, Method: Composition-based stats. Identities = 109/445 (24%), Positives = 179/445 (40%), Gaps = 30/445 (6%) Query: 59 HFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVR 118 F+ L + +L + + + + + KL E Sbjct: 43 RFLLQCLEDLDANLRKLNSRLFVIRG----QPADVFPRLFKEWSIAKLSIEYDSEPFGKE 98 Query: 119 RDKLLEKRLQHRVICKSFD-DSVLLPPGSILN-HALQMYKVYTPFRKALIQN-LVQADLR 175 RD ++K + L I+ + Q Y F+ + + ++ + Sbjct: 99 RDAAIKKLASEAGVEVIVRISHTLYDLDKIIELNGGQPPLTYKRFQTLISRMEPLEMPVE 158 Query: 176 SL-PVPAIRLTGPVTPSNIPR-----FFDYPFQA---IDPMFPIGEQNALHILRKFCKEK 226 ++ P + T PV+ + + + F ++P GE AL L + + K Sbjct: 159 TITPEVMQKCTTPVSDDHDEKYGVPSLEELGFDTDGLPSAVWPGGETEALTRLERHLERK 218 Query: 227 VYYYVEQRDIPAIQGT----SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWL 282 + +R + LSPYL G LS R + +L + + + K S S Sbjct: 219 AWVANFERPRMNANSLLASPTGLSPYLRFGCLSCRLFYFKLTDLYKKVK-KNSSPPLSLY 277 Query: 283 NELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQ 342 +L+WREF+ P + P +I W+K+ L W +G TGFP IDA M Q Sbjct: 278 GQLLWREFFYTAATNNPRFDKMEG-NPICVQIPWDKNPEALAKWAEGRTGFPWIDAIMTQ 336 Query: 343 LNTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGND 401 L GW+H+ R A FL + DL + W G + F LLD D + N G W W S + Sbjct: 337 LRQEGWIHHLARHAVACFLTRGDLWISWEEGMKVFEELLLDADWSVNAGSWMW-LSCSSF 395 Query: 402 SVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLD------KNDLSLN 455 +F + P G+R DP G +IR +LP L P +YI+ P + + K + +N Sbjct: 396 FQQFFHCYCPVGFGRRTDPNGDYIRRYLPVLRGFPAKYIYDPWNAPESVQKAAKCVIGVN 455 Query: 456 YPLPIVDHKKACHHTLNQYYAAKKQ 480 YP P+V+H +A + + +Q Sbjct: 456 YPKPMVNHAEASRLNIERMKQIYQQ 480 >gi|302745160|gb|ADL62683.1| cryptochrome 3 [Phreatichthys andruzzii] Length = 475 Score = 319 bits (817), Expect = 8e-85, Method: Composition-based stats. Identities = 119/481 (24%), Positives = 189/481 (39%), Gaps = 40/481 (8%) Query: 28 AACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQKSLSQKGIVFQYHQCSNF 87 A + +D V V+I P + + F+ SL + SL + + Sbjct: 1 EALNGADT-VRCVYILDPWFAGSANVGVNRWRFLLDSLEDLDTSLRKLNSRLFVVRGQPT 59 Query: 88 DDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH-RVICKSFDDSVLLPPGS 146 D + VT+L + E RD + K Q V + L P Sbjct: 60 D----VFPRLFKEWNVTRLTFEYDSEPYGKERDAAIIKMAQEYGVQTVVRNTHTLYNPDR 115 Query: 147 ILNHALQMYKVYTPFRKALIQNLV-QADLRSLPVPAIRL-----------TGPVTPSNIP 194 I+ +M P Q +V + +L P+P I +P Sbjct: 116 II----EMNNHSPPLTFKRFQAIVNRLELPRKPLPTITQEQMARCRTQISDNHDEHYGVP 171 Query: 195 RFFDYPFQ---AIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ-----GTSQLS 246 + F+ ++ GE A+ L K K + +R + LS Sbjct: 172 SLEELGFKTQRDSSHVWKGGETEAMERLNKHLDRKGWVANFERPRIITAQSLFASPTGLS 231 Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP 306 PYL G LS R + L+E F+ L + S S +L+WREF+ P+ + Sbjct: 232 PYLRFGCLSCRVFYYNLRELFMKLR-RRSSPPLSLFGQLLWREFFYTAGTNNPNFDRMEG 290 Query: 307 FIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK-DL 365 P +I W+ + L W +G TGFP IDA M QL GW+H+ R A FL + DL Sbjct: 291 -NPICVQIPWDHNPEALAKWAEGRTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDL 349 Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425 + W G + F LLD D + N G W W S +F + P G+R DP G +I Sbjct: 350 WISWESGMKVFEELLLDADWSVNAGSWMW-LSCSAFFQQFFHCYCPVGFGRRTDPSGDYI 408 Query: 426 RHWLPELNNVPTQYIHAPHSWLDK------NDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479 R ++P+L + P YI+ P + + + ++YP P+++H ++ + + + Sbjct: 409 RRYIPKLKDYPNCYIYEPWNAPESVQKAANCIVGVDYPKPMINHAESSRLNIERMKQVYQ 468 Query: 480 Q 480 Q Sbjct: 469 Q 469 >gi|226326776|ref|ZP_03802294.1| hypothetical protein PROPEN_00636 [Proteus penneri ATCC 35198] gi|225204613|gb|EEG86967.1| hypothetical protein PROPEN_00636 [Proteus penneri ATCC 35198] Length = 256 Score = 318 bits (816), Expect = 9e-85, Method: Composition-based stats. Identities = 164/253 (64%), Positives = 191/253 (75%) Query: 227 VYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELI 286 + +Y + RDIPA+ GTS+LSPYLSIG+LS RQC+NRL + + L SGAF W NELI Sbjct: 1 MPHYAKWRDIPAVDGTSRLSPYLSIGLLSIRQCFNRLYQTEPNFLENNTSGAFVWFNELI 60 Query: 287 WREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTI 346 WREFY+HL+ P++C F WTEKI W + AW QG TGFPIIDAAMRQLN Sbjct: 61 WREFYQHLIVANPNLCKHIAFQLWTEKINWRNNQDEFNAWTQGSTGFPIIDAAMRQLNQT 120 Query: 347 GWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYF 406 GWMHNRLRM+TASFL+KDLL+DWR GE YFMSQL+DGD ASNNGGWQWAASTG D+VPYF Sbjct: 121 GWMHNRLRMLTASFLIKDLLIDWRWGERYFMSQLIDGDFASNNGGWQWAASTGTDAVPYF 180 Query: 407 RIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKA 466 RIFNPT QG++FDP G FIRHWLPEL +VP++YIH PH W K + L+YPLPIVDH KA Sbjct: 181 RIFNPTTQGRKFDPDGEFIRHWLPELASVPSRYIHTPHEWAAKTNNPLDYPLPIVDHAKA 240 Query: 467 CHHTLNQYYAAKK 479 + Y KK Sbjct: 241 RIRAIESYEKDKK 253 >gi|222478726|ref|YP_002564963.1| DNA photolyase FAD-binding [Halorubrum lacusprofundi ATCC 49239] gi|222451628|gb|ACM55893.1| DNA photolyase FAD-binding [Halorubrum lacusprofundi ATCC 49239] Length = 465 Score = 318 bits (816), Expect = 9e-85, Method: Composition-based stats. Identities = 137/478 (28%), Positives = 211/478 (44%), Gaps = 26/478 (5%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 + L W R D R DN L AA V+ VF+ + + + ARQ F + ++ Sbjct: 1 MQLFWHRRDPRTRDNVGLAAAARTG--TVVPVFVYDTDLFGT--MGARQRAFFLRHVKRL 56 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128 ++ + G D + L + +FYN Y R + +E L+ Sbjct: 57 KERYREFGSDLVVR----AGDPEKVLVDLADEYDAEAVFYNEYYRPARRNRQRAVEGALE 112 Query: 129 H-RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187 V + D+VL+ PG + + Y + F P P Sbjct: 113 GFGVETNARTDAVLVDPGRL----EERYANHGRFHDEWE---TVPKPEPSPEPDADALVN 165 Query: 188 VTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ------G 241 + D + G + A F + + Y + RD A Sbjct: 166 MRDEKTVSEIDPDIDPDIDLPATGYRAARERFDGFLEHGIRSYADTRDDLARAVEAPTHA 225 Query: 242 TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSV 301 S++SPYL+ G + R+ W + F + + +EL WRE HL+ + P + Sbjct: 226 VSRMSPYLATGAIGIREMWADATDAFEAATGDERRNVDKYRDELSWREQMYHLLYYTPDL 285 Query: 302 CMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFL 361 + + + +I W +D +AW +G TG+P++DA MRQLN G++HNR R + ASFL Sbjct: 286 AVAN-YKSFPNEIAWREDDTAFEAWTRGETGYPLVDAGMRQLNAEGYVHNRPRQVVASFL 344 Query: 362 VKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQ 421 K LL+DWR G YF +QL+D D ASN+G WQW ASTG DSV RIF+P Q ++D Sbjct: 345 TKHLLIDWRRGARYFTTQLIDHDHASNHGAWQWTASTGTDSV-DVRIFDPVAQMAKYDAD 403 Query: 422 GTFIRHWLPELNNVPTQYIHAPH--SWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477 TF++ ++PEL +VP + I S +++ L+ YP PIVD + + A Sbjct: 404 ATFVKEYVPELRDVPAEEIVDWPTLSRVERETLAPEYPHPIVDRNEGYERAQRVFEEA 461 >gi|146276865|ref|YP_001167024.1| deoxyribodipyrimidine photo-lyase [Rhodobacter sphaeroides ATCC 17025] gi|145555106|gb|ABP69719.1| Deoxyribodipyrimidine photo-lyase type I [Rhodobacter sphaeroides ATCC 17025] Length = 470 Score = 318 bits (816), Expect = 1e-84, Method: Composition-based stats. Identities = 138/474 (29%), Positives = 215/474 (45%), Gaps = 25/474 (5%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 ++W R DLR+TDN + A ++ VFI PE R + A + ++ + Sbjct: 7 ILWFRRDLRLTDNPMVREAAATG-RPLVPVFILDPETER---LGAAPKWRLGLAVEAFAQ 62 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130 +L + G + ++E L + + ++R E RD+ ++ L+ + Sbjct: 63 ALERLGSRLILRRGP----ALEVLGRLAAETGALGVRWSRLCEPGWRSRDEGVKAGLKRQ 118 Query: 131 VIC-KSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP-- 187 I +S L P + Y+V+TPF K++ V A + + P Sbjct: 119 GIAAESHAGHTLFEPWEVRTGQGGFYRVFTPFWKSVKDRPVPAPVAAPAGLRAPTVWPRS 178 Query: 188 --VTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245 + + R + + +GE A L +F V Y RD TS+L Sbjct: 179 DRLADWGLARAMNRGAAVVARHVAVGEAAAAERLARFLDNPVDRYAAGRDRTDQAVTSRL 238 Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305 S L+ G +S R W+ + ++GA +L EL+WREF HL+ P + + Sbjct: 239 SENLTYGEISARTIWHAGLR----ARAEGRAGAEKFLQELVWREFAWHLLYHTPEIA-SR 293 Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365 + + W D+ + W++G TG P +DAAMR+L G MHNR R+I S+L K L Sbjct: 294 NWRGEWDAFPWRADNAEAERWRRGMTGEPFVDAAMRELFLTGTMHNRARLIAGSYLTKHL 353 Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425 L DWR+G+ +F L+D D ASN GWQW A +G D+ PYFR+FNP Q ++FDP G + Sbjct: 354 LTDWRVGQAWFEDCLIDWDPASNALGWQWVAGSGPDASPYFRVFNPATQAEKFDPDGAYR 413 Query: 426 RHWLPELNNVPTQYIHA-----PHSWLDKNDLSLNYPLPIVDHKKACHHTLNQY 474 R ++ EL+ P + P SW D YP P+V + L Y Sbjct: 414 RRFIAELSPDPGPEALSFFEAVPRSWGLAPDQC--YPRPVVGLAEGRARALAAY 465 >gi|37521318|ref|NP_924695.1| photolyase [Gloeobacter violaceus PCC 7421] gi|35212315|dbj|BAC89690.1| photolyase [Gloeobacter violaceus PCC 7421] Length = 490 Score = 318 bits (816), Expect = 1e-84, Method: Composition-based stats. Identities = 120/494 (24%), Positives = 208/494 (42%), Gaps = 27/494 (5%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M LVW R LR+ DN A A++ +FI P + + F+ SL Sbjct: 1 MIRSLVWFRKGLRLHDNPA-LLDAARDAARLYPLFIVDPWFVNPERVGVNRMRFLLESLG 59 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 ++ +L + G Q E L+ + ++ +L + R E RRD+ + Sbjct: 60 EIDGNLRRLGSRLIVLQG----RPQEVLERVLSRWQIGRLCFERDTEPYARRRDEAIRSM 115 Query: 127 LQH-RVICKSFDDSVLLPPGSILN-HALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL 184 + V S L P ++ ++ Y F + + + P Sbjct: 116 AERVGVRVISPTAHTLYDPDELIELGRGKVPTTYGAFGRLAAKLGEPDAPVASPSHLPPP 175 Query: 185 TGPVTPSNIPRFFDYPFQAID-----PMFPIGEQNALHILRKFCKEKV--YYYVEQRDIP 237 IP + + + + P GE L L + ++ + + P Sbjct: 176 GELDADYGIPTLAELGYPDPECPSRGIIPPGGEGEGLRRLHVYLSDRQRSAGFAKPDTDP 235 Query: 238 ---AIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHL 294 T+ L +L G LS R + +++ + ++ + S + +++WREF+ + Sbjct: 236 TAFDPPSTTALGAHLKFGCLSARTFYAEVQKVYREVG-EHTEPPMSLIGQILWREFFYTV 294 Query: 295 MAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLR 354 P+ + P +I W+ + L AW + TGFP IDAAM QL T GW+H+ R Sbjct: 295 GYATPNYDRIEG-NPVCRQIPWDDNPEYLAAWSEARTGFPWIDAAMTQLRTEGWLHHLSR 353 Query: 355 MITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTI 413 A FL + DL V W G+ F LLD D + N W W +++ + Y+R+++P Sbjct: 354 HAVACFLTRGDLWVSWEKGQAVFERLLLDQDWSLNASNWMWLSASAFFNA-YYRVYSPIS 412 Query: 414 QGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSW------LDKNDLSLNYPLPIVDHKKAC 467 K++DP+G ++R +LP+L VP ++I+ P + +YP PIVDH++A Sbjct: 413 FAKKYDPEGRYVRRYLPKLARVPAEFIYEPWRAPLLVQKQAGCVVGRDYPDPIVDHEQAK 472 Query: 468 HHTLNQYYAAKKQS 481 L + A +Q+ Sbjct: 473 ACNLERMRLAYEQN 486 >gi|123967930|ref|YP_001008788.1| putative deoxyribodipyrimidine photolyase [Prochlorococcus marinus str. AS9601] gi|123198040|gb|ABM69681.1| putative deoxyribodipyrimidine photolyase [Prochlorococcus marinus str. AS9601] Length = 498 Score = 318 bits (816), Expect = 1e-84, Method: Composition-based stats. Identities = 118/479 (24%), Positives = 215/479 (44%), Gaps = 35/479 (7%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 ++++W + DLRI DN+AL A ++D ++ ++I + W Q+ S RQ F SL+ + Sbjct: 4 INILWFKKDLRIFDNEALCEAIKDND--ILPIYIIELDIWSQNTHSDRQWQFCKESLIDL 61 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQY-EINEVRRDKLLEKR- 126 + +L++ G + I D+ + ++ ++ +++ + +RD+ +++ Sbjct: 62 RNALAEIGQPLIIRTG----NVINIFDAISSKFKIKGIYSHQETGDWLTYKRDQKVKEWA 117 Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 +I K F S+ L ++K +NL++A LR + +I Sbjct: 118 FSKNIIWKEFLQ------FSVFRGNLDRNNWSKKWQKNSEKNLLKAPLR---INSINFNT 168 Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIP--AIQGTSQ 244 PS+ F + + G + L ++ F K+ Y + P + ++ Sbjct: 169 GEIPSD--EIFSFKKETCPGRMQGGRKKGLERMQYFFSNKLDSYSKDISSPEKSFDSCTR 226 Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304 LSPY+ G +S LKE F I + + + L W + + P + Sbjct: 227 LSPYICWGCIS-------LKEIFQKANISKNNNSRMLKSRLTWHCHFIQKLESEPELEF- 278 Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364 + + P+ + I K++ LL +W G TGFP IDA MR LN GW++ R+R + SF + Sbjct: 279 REYHPFFKNIR-EKNNELLYSWSSGNTGFPFIDACMRSLNFHGWINFRMRAMLMSFASYN 337 Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424 L + W+ ++ +D + + Q +G S+ RI+NP QGK DPQG F Sbjct: 338 LWLPWQDSGSELANKFVDYEPGIHWNQCQMQ--SGTTSINTNRIYNPIKQGKDHDPQGKF 395 Query: 425 IRHWLPELNNVPTQYIHAPHSWLD---KNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQ 480 I+ WLPEL ++ +IH P + +NY PI+D + + + K+ Sbjct: 396 IKKWLPELKDLSLNFIHEPWLLSRFNKEEYEQINYIRPIIDIPNSTKNAKKKIQEITKK 454 >gi|163846298|ref|YP_001634342.1| deoxyribodipyrimidine photo-lyase [Chloroflexus aurantiacus J-10-fl] gi|222524057|ref|YP_002568527.1| deoxyribodipyrimidine photo-lyase [Chloroflexus sp. Y-400-fl] gi|163667587|gb|ABY33953.1| Deoxyribodipyrimidine photo-lyase [Chloroflexus aurantiacus J-10-fl] gi|222447936|gb|ACM52202.1| Deoxyribodipyrimidine photo-lyase [Chloroflexus sp. Y-400-fl] Length = 510 Score = 318 bits (816), Expect = 1e-84, Method: Composition-based stats. Identities = 117/475 (24%), Positives = 183/475 (38%), Gaps = 36/475 (7%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M + LVW + DLR+ D+ AL AA V+ ++I P +AR FI L+ Sbjct: 1 MYIQLVWFKRDLRLHDHPALSAAAARG--PVLPLYIVEPSLIHAPDFAARHWTFIRGCLV 58 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYE--INEVRRDKLLE 124 +++ +L++ G +++E LD + ++ + + ++ R + Sbjct: 59 ELRANLARLGQPLVVR----VGEAVEVLDHLVSTWPIEAIWAHEETGNLLSYARDRAVRR 114 Query: 125 KRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL 184 + LP ++ + + + + Q P+ Sbjct: 115 WARARGIPFHE------LPQNGVVRRLPSRDEWQARWEERMAAAQAQPPSALPPLAIDPG 168 Query: 185 TGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIP--AIQGT 242 T P P + P GE AL L F + Y P A +G Sbjct: 169 TIPTADE-----LSLPPDTLSEHQPAGETAALQTLTDFIHRRSQQYHRALASPLTAWEGC 223 Query: 243 SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWL-------NELIWREFYRHLM 295 S+LS YL+ G LS R + +L P W+ + L W + + Sbjct: 224 SRLSAYLAWGALSIRTVVQATRHRISELAFDPSPATRGWVRALNAFESRLHWHCHFIQKL 283 Query: 296 AFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRM 355 P + + + E N LL AW G TG+P +DA MR L GW++ R+R Sbjct: 284 EDEPEIEVRNLVRAYDGMREENHRPDLLVAWASGRTGYPFVDACMRALTATGWLNFRMRA 343 Query: 356 ITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQG 415 + SF+ DL WR + +D + + Q G RI+NP QG Sbjct: 344 MLVSFVAYDLWQHWREPALILARRWIDYEPGIHYS--QMQMQAGTSGNRTIRIYNPVKQG 401 Query: 416 KRFDPQGTFIRHWLPELNNVPTQYIHAPH------SWLDKNDLSLNYPLPIVDHK 464 DP+G FIR W+PEL +VPT YIH P + +YP PIVDH+ Sbjct: 402 IDHDPEGIFIRRWVPELAHVPTPYIHTPWLLDRHGQERAGCRIGRDYPAPIVDHE 456 >gi|114768849|ref|ZP_01446475.1| deoxyribodipyrimidine photolyase [alpha proteobacterium HTCC2255] gi|114549766|gb|EAU52647.1| deoxyribodipyrimidine photolyase [alpha proteobacterium HTCC2255] Length = 519 Score = 318 bits (815), Expect = 1e-84, Method: Composition-based stats. Identities = 103/489 (21%), Positives = 193/489 (39%), Gaps = 29/489 (5%) Query: 8 SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67 ++++VW + DLR D+ L A + ++ +++ P+ W+ S + HFIY L+ Sbjct: 7 AINIVWFKRDLRTNDHAPLLNASQQ-NTPILPIYVVEPDYWKTESSSRKHWHFIYDCLVD 65 Query: 68 VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYE-INEVRRDKLLEKR 126 + L+ G D I+ + + + ++ + + + RDK ++ Sbjct: 66 LNNELNDLGQPLIVQTGDVVDIFIQISEIF----DIKNIYSHEETGNMWTYERDKRVQVW 121 Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 + I P ++ K + + + P+ + Sbjct: 122 CKKNAI-----GQKEYPSNGVVRKLSSRDDWSKIRNKRMSEKIYPKPDYINPIK--KNVY 174 Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPA--IQGTSQ 244 P+ F P I + G A+ L+ F E+ Y+ P + S+ Sbjct: 175 STIPNKDDELFGTPI--IGRVQRGGRIKAICDLKSFLNERSSNYLYHISAPGKSEKYCSR 232 Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPK----SGAFSWLNELIWREFYRHLMAFYPS 300 LS +L+ G LS R+ +K+ + K ++ + L WR + + P+ Sbjct: 233 LSAHLTWGSLSVREIVQSIKKRRLQFCDDDKKIYGRNLSAFNSRLAWRCHFIQKIESQPN 292 Query: 301 VCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASF 360 + + + + D + AW +G TG+P +DA MR L + GW+ R+R + SF Sbjct: 293 IETHCMHSAFESLRKIDPDDNKFLAWSKGNTGYPFVDACMRNLISEGWITFRMRAMLVSF 352 Query: 361 LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDP 420 L +DWR+ Y D + + Q +G + R++NP Q D Sbjct: 353 ASYQLWIDWRLSGNYLAKLFTDFEPGIHFSQLQMQ--SGVTGINAMRVYNPIKQSIEHDI 410 Query: 421 QGTFIRHWLPELNNVPTQYIHAPHSWLD------KNDLSLNYPLPIVDHKKACHHTLNQY 474 G FI+ W+PEL ++P ++IH P + + + +YP PIVDH+ + Sbjct: 411 NGHFIKKWVPELIDLPEKFIHEPWKYHNNLVDNCSVQIGRDYPFPIVDHEHEARIAKQKI 470 Query: 475 YAAKKQSLL 483 +K L Sbjct: 471 SNVRKNELF 479 >gi|302761504|ref|XP_002964174.1| hypothetical protein SELMODRAFT_142524 [Selaginella moellendorffii] gi|300167903|gb|EFJ34507.1| hypothetical protein SELMODRAFT_142524 [Selaginella moellendorffii] Length = 539 Score = 318 bits (814), Expect = 2e-84, Method: Composition-based stats. Identities = 114/442 (25%), Positives = 192/442 (43%), Gaps = 24/442 (5%) Query: 58 SHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEV 117 ++ SL+Q+ SL + G + + +++ L +++FYN Y+ + Sbjct: 3 RWWLKQSLIQLSSSLERLGAPLLVKRVA---GTLDALLQIAHDTGASQVFYNHLYDPVSL 59 Query: 118 RRDKLLEKRLQ-HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRS 176 RD +++ L H + +F +L P I + Q + + F + Sbjct: 60 IRDHRVKQGLADHGISVTTFRGDLLYEPWEIYDDQGQAFTTFQAFWSKSLSMRDPEAPLL 119 Query: 177 LPVPAIRLTGPVTPSNIPRFFDYPFQA-------IDPMFPIGEQNALHILRKFCKEKVYY 229 P + L G + S +A + + G F + Sbjct: 120 PPRQLLSLPGYLCQSCSIDQLGLENEAEKSSNALLARSWTPGWCAGDKAFTDFLSGPILQ 179 Query: 230 YVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLK-EEFVDLLIKPKSGAFSWLNELIWR 288 Y +R TSQLSP+L G +S R+ + ++ ++F +L L R Sbjct: 180 YSIRRKQIDSVTTSQLSPHLHFGEISIRKIFYSIRMQQFRSKEAVDFESMNMFLRALGLR 239 Query: 289 EFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGW 348 E+ R+L +P + + + W D ++W+QG TG+P++DA MRQL GW Sbjct: 240 EYSRYLSFNFP-FTHKRSLLANLKHFPWRADEGYFKSWRQGRTGYPLVDAGMRQLWATGW 298 Query: 349 MHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRI 408 +H ++R++ +SFLVK L V W G +YF LLD D+ ++ GWQ+ + D R Sbjct: 299 LHCKIRVVVSSFLVKFLQVPWTWGMKYFWETLLDADVENDVLGWQYISGGLPDGHELDRW 358 Query: 409 FNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSW------LDKNDLSLNYPLPIVD 462 NP +G + DP+G ++R WLPEL+ VP +IH P +L NYP PIV+ Sbjct: 359 ENPQEEGYKLDPKGEYVRKWLPELSRVPIDWIHHPWDAPSTILRAAGVELGSNYPRPIVE 418 Query: 463 HKKA---CHHTLNQYYAAKKQS 481 A L++ + KK + Sbjct: 419 VAAAYYRQQQALDEMW--KKSA 438 >gi|260431373|ref|ZP_05785344.1| deoxyribodipyrimidine photo-lyase [Silicibacter lacuscaerulensis ITI-1157] gi|260415201|gb|EEX08460.1| deoxyribodipyrimidine photo-lyase [Silicibacter lacuscaerulensis ITI-1157] Length = 541 Score = 318 bits (814), Expect = 2e-84, Method: Composition-based stats. Identities = 108/486 (22%), Positives = 188/486 (38%), Gaps = 28/486 (5%) Query: 4 TTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYA 63 + + +VW + DLR++D+ AL A V+ +++ PE W+Q SARQ +F+ Sbjct: 33 KSGGMMQVVWFKRDLRVSDHPALAQASE--VGPVLPLYVVEPELWQQPDASARQWNFVAE 90 Query: 64 SLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEV-RRDKL 122 ++ +++ L + G + L + + L+ + + + +RD+ Sbjct: 91 TIAELRSDLGELGQPLIVR----VGEIEAVLSELLNRGLIDVLWSHEETGNDWTYQRDRQ 146 Query: 123 LEKRLQ-HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPA 181 + + H V + + + + + + + + L D +P Sbjct: 147 VAAWCRDHGVRWREVQNHGVFRGLKCRDGWAERWDRFMALPVSSPVALKHIDTEPGYIPT 206 Query: 182 IRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIP--AI 239 R G + R G L L F + Y + P Sbjct: 207 GRDLGLRDDQCVGR------------QAGGRAAGLDRLNSFLTRRGERYQREMSSPLEGA 254 Query: 240 QGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGA---FSWLNELIWREFYRHLMA 296 S+LSPYL+ G LS R+ W + + L K S+ L W + + Sbjct: 255 VACSRLSPYLAWGALSMREVWQATENQRRRLPPHAKDWRKSLRSFSGRLHWHCHFIQKLE 314 Query: 297 FYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMI 356 P + + D+ LL AW G TG+P +DA MR L GW++ R+R + Sbjct: 315 DEPRIEFENLHRLYDGLRPRAPDAELLGAWSNGETGYPFLDACMRSLQATGWLNFRMRAM 374 Query: 357 TASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGK 416 + L +DWR E+ D + + Q +G + RI+NP QG Sbjct: 375 VMATASYHLWLDWRAPGEHLARMFTDYEPGIHWSQVQMQ--SGTTGINTVRIYNPVKQGY 432 Query: 417 RFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDL-SLNYPLPIVDHKKACHHTLNQYY 475 DP+G FIR WLPEL + Q++H P + D+ YP + DH A + + Sbjct: 433 DQDPEGLFIRTWLPELAQIADQHVHEPWKAENAKDIVGTLYPERVFDHLAAAKAARERVW 492 Query: 476 AAKKQS 481 ++ + Sbjct: 493 GVRRSA 498 >gi|157412732|ref|YP_001483598.1| deoxyribodipyrimidine photolyase [Prochlorococcus marinus str. MIT 9215] gi|157387307|gb|ABV50012.1| Deoxyribodipyrimidine photolyase [Prochlorococcus marinus str. MIT 9215] Length = 497 Score = 317 bits (813), Expect = 2e-84, Method: Composition-based stats. Identities = 113/479 (23%), Positives = 205/479 (42%), Gaps = 35/479 (7%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 ++++W + DLRI +N+ALY + ++D ++ ++I E W Q S RQ F S+L + Sbjct: 4 INILWFKKDLRIDENEALYESLKDND--ILPIYIFEIEVWNQKTHSRRQWQFCKESVLDL 61 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQY-EINEVRRDKLLEKRL 127 + SL + G + I + + V ++ +++ + +RDK ++ Sbjct: 62 RNSLKEIGQPLIIRTG----NVINIFEEISSKFNVVGIYSHQETGDWVTYKRDKEVKLWA 117 Query: 128 QHR-VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 ++ +I + F S+ + ++K + L++ LR P+ Sbjct: 118 ANKKIIWREFLQ------FSVFRGNINRDDWSKKWKKNTERELIKRPLRISPI-----DF 166 Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIP--AIQGTSQ 244 + + F + G + + ++ F EK+ Y + P + S+ Sbjct: 167 DIGEIPDEKIFSFKKDECKGSLKGGRKKGIERMQYFFNEKLNSYSKNISSPEKSFDSCSR 226 Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304 LSPY+S G +S ++ + + + + + + L W + + P + Sbjct: 227 LSPYISWGCISLKEIFY-------KANLNKNNNSIMFKSRLTWHCHFIQKLESEPELEF- 278 Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364 F P+ + K++ LL W QG TG+P IDA MR LN GW++ R+R + SF + Sbjct: 279 CDFHPYFKNSR-TKNTELLLLWSQGNTGYPFIDACMRSLNFNGWINFRMRAMLMSFASYN 337 Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424 L + W+ ++ +D + + Q +G S+ RI+NP QGK DP+G F Sbjct: 338 LWLPWQDSGSELANKFVDYEPGIHWNQCQMQ--SGTTSINTNRIYNPIKQGKDHDPEGEF 395 Query: 425 IRHWLPELNNVPTQYIHAPHSWLD---KNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQ 480 IR W+PEL NV +IH P L Y PIVD K + ++ Sbjct: 396 IRKWVPELKNVAIDFIHEPWILSKFNCDEYAKLEYIKPIVDISKTSREARKKIQEITQK 454 >gi|47207105|emb|CAF92156.1| unnamed protein product [Tetraodon nigroviridis] Length = 755 Score = 317 bits (813), Expect = 2e-84, Method: Composition-based stats. Identities = 134/515 (26%), Positives = 209/515 (40%), Gaps = 58/515 (11%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHG-----ISARQSHFIYASL 65 L+W R DLR+ DN AL AA A VI +FI +PE+ ++++ +L Sbjct: 106 LLWFRRDLRLCDNPALTAALE-VGAPVIPIFIWSPEEEEGPAGVTVATGGACKYWLHQAL 164 Query: 66 LQVQKSLSQKGIVFQYHQ----CSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDK 121 + SL + G + + S++ L + + N YE RD Sbjct: 165 SCLCASLERNGSHLVFLRSAEAGGEGGSSLQTLKELVKETGARTVMANALYEPWLKDRDH 224 Query: 122 LLEKRL-QHRVICKSFDDSVLLPPGSILNHALQMYKVYT--PFRKALIQNLVQ------A 172 L + V CK F L P S+ + + + + F QN Sbjct: 225 AAAVALWKSGVECKMFHSYCLRDPYSVRTEGVGLRGIGSVSHFLSCCRQNPGPALGAPLE 284 Query: 173 DLRSLPVPAIRLTGPVTPS---------NIPRFFDYPFQAIDPMFPIGEQNALHILRKFC 223 +LPVPA G + D+ +I + E+ A L F Sbjct: 285 PPTALPVPAHWPRGAPLEALGLARMPRRKDGTTVDW-AASIRKSWDFSEEGAHARLEAFL 343 Query: 224 KEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLN 283 + VY Y ++ TS +SPYL G LSPR K + Sbjct: 344 GDGVYRYDKESGRADAPNTSCVSPYLHFGQLSPRWVLWDAKAARCR--------PPKFQR 395 Query: 284 ELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQL 343 +L WR+ ++ +P + + P + + W+ D L+AW++G TG+P++DAAMRQL Sbjct: 396 KLAWRDLAYWQLSLFPELPW-ESLRPPYKALRWSSDRRHLKAWQRGGTGYPLVDAAMRQL 454 Query: 344 NTIGWMHNRLRMITASFLVKDLLVDWRIGEEYF-----------MSQLLDGDLASNNGGW 392 GWM+N +R + ASFL+ L + W+ G +F L+D D+A + W Sbjct: 455 WLTGWMNNYMRHVVASFLIAYLHLPWQEGYRWFQVRNGCRGDTGQDTLVDADVAIDAMMW 514 Query: 393 QWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPH----SWLD 448 Q G D + + +P DP G+++R W PEL+ +P + IH P S L Sbjct: 515 QNGGMCGLDHWNF--VMHPVDAAMTCDPDGSYVRKWCPELSGLPDELIHKPWKCPASVLR 572 Query: 449 KND--LSLNYPLPIV-DHKKACHHTLNQYYAAKKQ 480 + L YP IV D ++ +L +KQ Sbjct: 573 RAGVVLGQTYPERIVTDLEERRSRSLRDVALVRKQ 607 >gi|293191025|ref|ZP_06609069.1| deoxyribodipyrimidine photolyase family protein [Actinomyces odontolyticus F0309] gi|292820712|gb|EFF79678.1| deoxyribodipyrimidine photolyase family protein [Actinomyces odontolyticus F0309] Length = 475 Score = 317 bits (812), Expect = 3e-84, Method: Composition-based stats. Identities = 144/493 (29%), Positives = 216/493 (43%), Gaps = 54/493 (10%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIA----TPEQWRQHG---ISARQSHFI 61 L+WLR+DLR+ D+ AL AAC +D V+A++I T E +HG + A + Sbjct: 2 TTLIWLRDDLRLADHPALTAACSAADGPVVALWIHETRRTDEDNNRHGPRPLGAATRWWY 61 Query: 62 YASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDK 121 + SL Q+ L+ GI + + + +D+ T + + R+Y R D Sbjct: 62 HRSLQQLAPRLADLGIPLVFTRGDAANVMRRVVDALQP----TVVHWTRRYAPAACRLDA 117 Query: 122 LLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPA 181 +++ L R S S+L P + Y+V+TPF A+ + + L Sbjct: 118 AIKQELTSRTEVHSHPGSLLAEPWLMQTVNGSHYQVFTPFSHAVADLPLTSLLPEPSPIG 177 Query: 182 IR------LTGPVTPSNIPRFFDYPF---------QAIDPMFPIGEQNALHILRKFCKEK 226 R L + D + + + GE A L Sbjct: 178 ERGGADTALATLREDGVLQNLEDIGLLDEGPAWWEETLAQHWEPGELAARQQLDA-IDSW 236 Query: 227 VYYYVEQRDIPAIQ-GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNEL 285 + Y +RD+P + TS++SP L G LSPRQ + +W +L Sbjct: 237 LPGYATRRDLPGEETSTSRISPRLRCGELSPRQAVAAAR-----TSTASGEDIVAWTRQL 291 Query: 286 IWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNT 345 WREF HL+ + P P + + D HL +AW+QG TG ++DA MRQL Sbjct: 292 YWREFSWHLLHHREHL-EDTPMRPAFAEFPYYPDDHLARAWRQGRTGIDLVDAGMRQLWQ 350 Query: 346 IGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPY 405 GWMHNR+RM+ AS L K++L W+ GE++F L+D D A+N WQW A G D+ PY Sbjct: 351 TGWMHNRVRMVAASLLTKNMLQPWQDGEQWFWETLVDADEANNPISWQWVAGCGADAAPY 410 Query: 406 FRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKK 465 FRIFNP +Q RFDP+ ++R W+PE P + VD + Sbjct: 411 FRIFNPDLQRTRFDPRSRYVRRWIPEGLARPVVSV--------------------VDLAE 450 Query: 466 ACHHTLNQYYAAK 478 + L Y + Sbjct: 451 SRREALAAYEQVR 463 >gi|89069099|ref|ZP_01156472.1| deoxyribodipyrimidine photolyase [Oceanicola granulosus HTCC2516] gi|89045272|gb|EAR51338.1| deoxyribodipyrimidine photolyase [Oceanicola granulosus HTCC2516] Length = 478 Score = 317 bits (812), Expect = 3e-84, Method: Composition-based stats. Identities = 140/481 (29%), Positives = 214/481 (44%), Gaps = 35/481 (7%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 LVW+R +LR+ D+ AL A V+ VF+ + A + + + Sbjct: 7 LVWVRRELRLGDHPALAEAAATG-RPVVPVFLCDETVEAR---GAAAQWRLGLGVAAFAE 62 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130 +L+ G + + + +++++R +E ++ + L Sbjct: 63 ALAGAGSRLVLRRGGAAAAL----VALAREAEAGEVWWSRAHEPVAAALERDVAGALAAE 118 Query: 131 VI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189 I ++F+ VL PP S+ YKVYTPF K++ V L P RLT P Sbjct: 119 GIGTRAFEGHVLFPPESVATKTGGYYKVYTPFWKSVRDRDVGTPLP----PPKRLTAPGR 174 Query: 190 PSNIPRFFDYPFQA--------IDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQG 241 R + A + +GE A L +F +E++ Y + R+ ++G Sbjct: 175 WPESERLEAWGLGAEMRRGADVVAEHVVVGEAAAARRLERFVEERLADYPQARNRFDVEG 234 Query: 242 TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSV 301 TS LS L++G +S R CW GA ++L E+ WR+F HL+ P + Sbjct: 235 TSGLSENLAVGEISARSCWQAGLM----ARDAGNPGAETFLKEVAWRDFAYHLLHHTPRL 290 Query: 302 CMGKPFIPWTEKIEWNKDSHLLQA--WKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITAS 359 + P WN D + W++G TG ++DAAMR++ G MHNR RMI S Sbjct: 291 ATDN-WRPEWAAFPWNTDEDAPEVVAWQRGRTGVALVDAAMREMYVTGRMHNRGRMIVGS 349 Query: 360 FLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFD 419 +L K LL WRIG+ +F + L D D A+N GWQW A +G D+ P+FR+FNP Q ++FD Sbjct: 350 YLTKHLLSHWRIGQRWFDAHLTDWDPANNALGWQWVAGSGPDASPFFRVFNPDGQAEKFD 409 Query: 420 PQGTFIRHWLPELNNVPTQYIHA-----PHSWLDKNDLSLNYPLPIVDHKKACHHTLNQY 474 P G + R W+ E + P A P W D YP P+V + L Y Sbjct: 410 PDGAYRRKWVAEGQDDPPATALAYFAAIPRKWSMSADDP--YPQPVVGLAEGRARALAAY 467 Query: 475 Y 475 Sbjct: 468 K 468 >gi|119503732|ref|ZP_01625814.1| deoxyribodipyrimidine photolyase, putative [marine gamma proteobacterium HTCC2080] gi|119460240|gb|EAW41333.1| deoxyribodipyrimidine photolyase, putative [marine gamma proteobacterium HTCC2080] Length = 490 Score = 316 bits (811), Expect = 4e-84, Method: Composition-based stats. Identities = 121/482 (25%), Positives = 189/482 (39%), Gaps = 21/482 (4%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 MS+ +VW + DLR+ D+ L AA ++ V+I PE + R HFI SL Sbjct: 1 MSLSVVWFKRDLRLADHAPLSAAVALGQ-PMLLVYIVEPELLKNPHYRRRHWHFIAQSLA 59 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEV-RRDKLLEK 125 + L G + D I + QR+ LF + + RD+ + Sbjct: 60 DLNHQLQPHGTKVWVLEG----DPITLFTAINQSQRIHHLFSYEETGLEVTFARDREVIT 115 Query: 126 RLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185 + + +C P + + K + L L Sbjct: 116 WAKSQGVCWQE-----FPTNGVQRGRKHRKGWNHRWGKLMAAPAETIIPAQLNALRSDLP 170 Query: 186 GPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIP--AIQGTS 243 + + R + Q + P GEQ A L F + Y P + Q S Sbjct: 171 EDLKGALCQRLGGWLPQHPN-FQPGGEQQAHQTLEDFLTHRAGGYQRHISKPEGSRQHCS 229 Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCM 303 +LSP+L+ G LS RQ LKE A + + L W + ++ Sbjct: 230 RLSPHLAWGNLSIRQVQQALKERQSKGGWARPLSA--FESRLHWHCHFIQKFESECTMEF 287 Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363 + +++SHL+ AW +G TGFP +DA MR L G++H R R + SFL Sbjct: 288 -ESINRGFLNYPRDQNSHLVAAWCEGQTGFPYVDACMRCLEATGYLHFRARAMLVSFLTH 346 Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423 L DWR+G + S LD + + Q G + RI+NP Q DP + Sbjct: 347 HLWQDWRLGVTWLGSLFLDFEPGIHYP--QMQMQAGVTGINTIRIYNPVKQSLEHDPTAS 404 Query: 424 FIRHWLPELNNVPTQYIHAPH--SWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481 FIR W+PE+ ++PT +H P S L+ ++YP PIV+ + + + K Sbjct: 405 FIRRWVPEIADLPTPLVHQPWLRSPLEHVLHPVDYPEPIVNLDVSHRRARDVLWELKSDP 464 Query: 482 LL 483 ++ Sbjct: 465 MI 466 >gi|154508252|ref|ZP_02043894.1| hypothetical protein ACTODO_00748 [Actinomyces odontolyticus ATCC 17982] gi|153797886|gb|EDN80306.1| hypothetical protein ACTODO_00748 [Actinomyces odontolyticus ATCC 17982] Length = 475 Score = 316 bits (810), Expect = 4e-84, Method: Composition-based stats. Identities = 144/492 (29%), Positives = 217/492 (44%), Gaps = 54/492 (10%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIA----TPEQWRQHG---ISARQSHFI 61 L+WLR+DLR+ D+ AL AAC +D V+A++I T E +HG + A + Sbjct: 2 TTLIWLRDDLRLADHPALTAACSAADGPVVALWIHETRRTDEDNNRHGPRPLGAATRWWY 61 Query: 62 YASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDK 121 + SL Q+ L+ GI + + + + +D+ T + + R+Y R D Sbjct: 62 HRSLQQLAPRLADLGIPLVFARGDAANVMRQVVDALQP----TVVHWTRRYAPAACRLDA 117 Query: 122 LLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPA 181 +++ L+ R S S+L P + Y+V+TPF A+ + L Sbjct: 118 AIKQELKSRTEVHSHPGSLLAEPWLMQTVNGSHYQVFTPFSHAVADLPLGPLLPEPSPIG 177 Query: 182 IR------LTGPVTPSNIPRFFDYPF---------QAIDPMFPIGEQNALHILRKFCKEK 226 R L + D + + + GE A L Sbjct: 178 ERGGADTALATLREDGVLQNLEDIGLLDEGPAWWEETLAQHWEPGELAARQQLDA-IDSW 236 Query: 227 VYYYVEQRDIPAIQ-GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNEL 285 + Y +RD+P + TS++SP L G LSPRQ + +W +L Sbjct: 237 LPGYATRRDLPGEETSTSRISPRLRCGELSPRQAVAAAR-----TSTASGEDIVAWTRQL 291 Query: 286 IWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNT 345 WREF HL+ + P P + + D HL +AW+QG TG ++DA MRQL Sbjct: 292 YWREFSWHLLHHREHL-EDTPMRPAFAEFPYYPDDHLARAWRQGRTGIDLVDAGMRQLWQ 350 Query: 346 IGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPY 405 GWMHNR+RM+ AS K++L W+ GE++F L+D D A+N WQW A G D+ PY Sbjct: 351 TGWMHNRVRMVAASLFTKNMLQPWQDGEQWFWETLVDADEANNPISWQWVAGCGADAAPY 410 Query: 406 FRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKK 465 FRIFNP +Q RFDP+ ++R W+PE P +P+VD + Sbjct: 411 FRIFNPDLQRTRFDPRSRYVRRWIPEGLARPV--------------------VPVVDLAE 450 Query: 466 ACHHTLNQYYAA 477 + L Y Sbjct: 451 SRREALAAYEQV 462 >gi|210136298|gb|ACJ08741.1| cryptochrome [Sarcophaga bullata] Length = 542 Score = 316 bits (810), Expect = 4e-84, Method: Composition-based stats. Identities = 127/515 (24%), Positives = 208/515 (40%), Gaps = 44/515 (8%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDA--KVIAVFIATPEQWRQHGISARQSHFIYAS 64 MS++++W R+ LR+ DN AL A + D +++ +FI E + + F+ S Sbjct: 1 MSLNIIWFRHGLRLHDNPALLDAISDKDEGIELLPIFIFDGESAGTQSVGYNRLKFLLDS 60 Query: 65 LLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLE 124 L + L + + ++ S Q+ + KL + + E RRD ++ Sbjct: 61 LEDINNQLRSVSLSL-GRLYIMKGNPVQIFRSLHEQRGIKKLCFEQDCEPIWNRRDNAVK 119 Query: 125 KRLQH-RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIR 183 + C L P ++N + + +Q ++ R +P P Sbjct: 120 NLCHDLGITCIERISHTLWDPKKVINTNGGIPPLTYQMFLHTVQ-IIGLPPRPVPDPDWH 178 Query: 184 -----------------LTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKE- 225 TP + + D + GE AL L + K Sbjct: 179 NVKFVKLSEKLIKDLGVFLESPTPEDFSVYPDSLSYLAKVKWIGGETQALLHLDQRLKVE 238 Query: 226 ----KVYYYVEQRDIPAI-QGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPK----- 275 K YY+ + P I + +S +L G LS R+ + + + F D+ + + Sbjct: 239 ESAFKCGYYLPNQAKPNILESPKSMSAHLRFGCLSVRKFYWDVHDLFKDVQQQAECLGML 298 Query: 276 -SGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEW-NKDSHLLQAWKQGYTGF 333 SG +LIWRE++ + P+ + I W + LQ W QG TGF Sbjct: 299 MSGGAHITGQLIWREYFYTMSVNNPNYDRMEG-NEICLNIPWAETNHIQLQRWTQGKTGF 357 Query: 334 PIIDAAMRQLNTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGW 392 P+IDAAMRQL GW+H+ LR A+FL + L +W G YF+ LLD D + G W Sbjct: 358 PLIDAAMRQLLAEGWLHHTLRNTVATFLTRGGLWQNWEHGLRYFLKYLLDADWSVCAGNW 417 Query: 393 QWAASTGNDSVPYFR-IFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLD--- 448 W +S+ + + + P KR DP G +I+ ++PEL NVP +YIH P Sbjct: 418 MWVSSSAFERLLDSSLVTCPIALAKRLDPMGQYIKQYVPELANVPKEYIHEPWRMPMNIQ 477 Query: 449 ---KNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQ 480 + ++YP ++D AC + Sbjct: 478 EDSDCVIGIHYPERLIDLNVACKRNTIAMRTLRNA 512 >gi|310831104|ref|YP_003969747.1| putative CPD class I photolyase [Cafeteria roenbergensis virus BV-PW1] gi|309386288|gb|ADO67148.1| putative CPD class I photolyase [Cafeteria roenbergensis virus BV-PW1] Length = 474 Score = 316 bits (810), Expect = 5e-84, Method: Composition-based stats. Identities = 143/481 (29%), Positives = 226/481 (46%), Gaps = 29/481 (6%) Query: 10 HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQ-WRQHGISARQSHFIYASLLQV 68 +L R DLRI DN L+ A ++ I +FI T +Q +S F+ SL + Sbjct: 3 NLFIFRRDLRIIDNLGLHQALKETNT--IPIFIFTHQQVINNPYLSDNSFGFLIESLEDL 60 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD-KLLEKRL 127 K +S+ Y + I+ + + K++ N+ + +RD KLLE Sbjct: 61 SKQISKNKGKLYYFLTNKNTTEIDIISQIIQYNNILKIYTNKDWTPYAKKRDDKLLEFGK 120 Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKA----LIQNLVQADLRSLPVPAIR 183 + +I +D LLP GSI + YK++TPF + I+ Sbjct: 121 KENIIINLIEDYTLLPMGSICTNNNTAYKIFTPFYNKSKELWKNIPKPTKVNKYKFNKIK 180 Query: 184 LTGPVTPS-NIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGT 242 + + N+ Y + G +NAL L+K +K Y +R+ + T Sbjct: 181 FINLIKSNINLSAMKQYYKSNSFRLVQGGRKNALLQLKKIKNQK--EYSIKRNNLMYE-T 237 Query: 243 SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVC 302 + LS Y+ G +S R+ + + K+ D + ++L WREFY ++ +Y V Sbjct: 238 THLSAYIKFGCISIREVFYKFKKYLKDNN--------TLYSQLFWREFYTYITHYYQYVL 289 Query: 303 MGK-------PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRM 355 G+ F +W+ + L WK+G TGFPI+DA +++L T G+MHNR R+ Sbjct: 290 QGQISNKVNLDFQEKYGNFKWSNNKTFLNKWKKGETGFPIVDAGIKELLTTGYMHNRSRL 349 Query: 356 ITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQG 415 +T++FL+K L+DWR GE+YF +L D D A NNGGWQ+ G + YFRI +P Q Sbjct: 350 LTSAFLIKLCLIDWREGEKYFAQKLTDYDPAQNNGGWQFHHG-GASNADYFRIISPISQA 408 Query: 416 KRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDL-SLNYPLPIVDHKKACHHTLNQY 474 RFD +I+ WLP L ++ +++ + DL LNY P+ D+KK +L Y Sbjct: 409 NRFDKNAEYIKKWLPNLKDIKPKHLLDWEQYYSCYDLNKLNYFKPMFDYKKQRELSLKTY 468 Query: 475 Y 475 Sbjct: 469 K 469 >gi|311695859|gb|ADP98732.1| deoxyribodipyrimidine photo-lyase [marine bacterium HP15] Length = 538 Score = 316 bits (810), Expect = 5e-84, Method: Composition-based stats. Identities = 102/482 (21%), Positives = 186/482 (38%), Gaps = 24/482 (4%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 +VW + DLR D+ L AA + VI +++ + W+ S RQ FI SL + Sbjct: 29 TTVVWFKRDLRTRDHAPLVAAASLGE-PVIPLYVIEDDYWQLPDTSGRQWAFIRDSLDDL 87 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEV-RRDKLLEKRL 127 + L + G + S D L +Q + ++F +++ + RD+ + Sbjct: 88 DRQLRKAGSQLLVIRGSVTD----ALKKLQARQGIDRIFCHQETGGHWTFERDRAVIGWC 143 Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187 + + ++ + + + Q +++A ++ Sbjct: 144 SENQVEFREWNQF-----GVVRRLSDRDVWDRAWTELMRQPVLEAPTAIPTSDTLKTDWA 198 Query: 188 VTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIP--AIQGTSQL 245 D + G +L F + Y P A++ S+L Sbjct: 199 ADNGQGFEVPD----SCPDRQKGGSARGEKLLESFLDRRCVGYQYNISSPNTAVRACSRL 254 Query: 246 SPYLSIGVLSPRQCWNRLKE--EFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCM 303 SP+++ G +S R+ + K + L + K S+ + L W + + P + Sbjct: 255 SPHIAYGTVSLREIYQEAKATGNHRNTLPRKKKSLTSFRSRLHWHCHFIQKLEDEPELEF 314 Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363 DS LQ W++G TG+P++DA+MR L GW++ R+R + + Sbjct: 315 RAMHREMEALKTGPNDSERLQRWQEGQTGWPLVDASMRALAHSGWINFRMRAMLMAIASY 374 Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423 L + WR + D + + Q + + RI+NP +Q ++ DP+G Sbjct: 375 QLWLHWRDPALHLARLFTDFEPGIHYSQTQMQSGLT--GINALRIYNPVLQSQKLDPEGE 432 Query: 424 FIRHWLPELNNVPTQYIHAPHSWLDKNDL---SLNYPLPIVDHKKACHHTLNQYYAAKKQ 480 FIR W+PEL VP++ IH P Y P+ DH++A +KQ Sbjct: 433 FIRRWIPELAGVPSEMIHTPWLMTPAQKERYGGNTYIAPVCDHEQAARVARKAVGDFRKQ 492 Query: 481 SL 482 S+ Sbjct: 493 SV 494 >gi|19772572|gb|AAL46564.1| cryptochrome 2 [Gallus gallus] Length = 531 Score = 316 bits (810), Expect = 5e-84, Method: Composition-based stats. Identities = 109/451 (24%), Positives = 174/451 (38%), Gaps = 30/451 (6%) Query: 53 ISARQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQY 112 + + F+ SL + SL + + D + VT+L + Sbjct: 5 VGINRWRFLLQSLEDLDNSLRKLNSRLFVVRGQPTD----VFPRLFKEWGVTRLAFEYDS 60 Query: 113 EINEVRRDKLLEKRLQH-RVICKSFDDSVLLPPGSILNHAL-QMYKVYTPFRKALIQNLV 170 E RD + K + V + L I+ + Y F+ + + + Sbjct: 61 EPFGKERDAAIIKLAKEAGVEVVIENSHTLYNLDRIIELNGNKPPLTYKRFQAIISRMEL 120 Query: 171 QADLRSLPVPAIRLTGPVTPSNIP-------RFFDYPFQA---IDPMFPIGEQNALHILR 220 S V T V + F ++ GE AL L Sbjct: 121 PKKPVSSIVSQQMETCKVDIQENHDDVYGVPSLEELGFPTDGLAPAVWQGGETEALARLD 180 Query: 221 KFCKEKVYYYVEQRDIPAIQGT----SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKS 276 K + K + +R + LSPYL G LS R + RL E + + + + Sbjct: 181 KHLERKAWVANYERPRMNANSLLASPTGLSPYLRFGCLSCRLFYYRLWELYKKVK-RNST 239 Query: 277 GAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPII 336 S +L+WREF+ P + P +I W+K+ L W +G TGFP I Sbjct: 240 PPLSLYGQLLWREFFYTAATNNPKFDRMEG-NPICIQIPWDKNPEALAKWAEGKTGFPWI 298 Query: 337 DAAMRQLNTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWA 395 DA M QL GW+H+ R A FL + DL + W G F LLD D + N G W W Sbjct: 299 DAIMTQLRQEGWIHHLARHAVACFLTRGDLWISWESGVRVFDELLLDADFSVNAGSWMW- 357 Query: 396 ASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLD------K 449 S +F + P G+R DP G +++ +LP+L P++YI+ P + + K Sbjct: 358 LSCSAFFQQFFHCYCPVGFGRRTDPSGDYVKRYLPKLKGFPSRYIYEPWNAPESVQKAAK 417 Query: 450 NDLSLNYPLPIVDHKKACHHTLNQYYAAKKQ 480 + ++YP P+V+H + + + +Q Sbjct: 418 CIIGVDYPKPMVNHAETSRLNIERMKQIYQQ 448 >gi|55377570|ref|YP_135420.1| photolyase/cryptochrome [Haloarcula marismortui ATCC 43049] gi|55230295|gb|AAV45714.1| photolyase/cryptochrome [Haloarcula marismortui ATCC 43049] Length = 464 Score = 316 bits (810), Expect = 5e-84, Method: Composition-based stats. Identities = 134/486 (27%), Positives = 222/486 (45%), Gaps = 35/486 (7%) Query: 1 MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHF 60 M + +H+ W + DLRI DN+ L AA +D +V+ V++ + I RQ F Sbjct: 1 MLVSLTKCMHVFWHQRDLRIPDNRGLTAAA--ADDEVLPVYVLDTDLLA--NIGKRQKAF 56 Query: 61 IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120 + A + ++++ G + + +++ L + + +++YN Y R Sbjct: 57 LLAGVRALKQAYRDHGGELLVKKGT----AVDVLSNVVDEYDADRVYYNEHYRPARRNRQ 112 Query: 121 KLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVP 180 + +++ L KS D VL+ P + + Y+ ++ F + + S Sbjct: 113 RRVDEALP----TKSLTDLVLVDPAGLDSQ----YENHSRFYDDWQAHHKLPPVGSPDSG 164 Query: 181 A-IRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIP-- 237 + + ++ P T I D P G + A F + Y + RD Sbjct: 165 SLVDVSDPTTAPTIETEMDLPT--------PGYEGARQRYDDFLTGGIETYNDTRDDMQA 216 Query: 238 ----AIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRH 293 S++SPYL+ G++ R+ W + + + + EL WRE H Sbjct: 217 AVERPTSAVSRMSPYLAAGMIGIREMWRDASDRHTEATGDAQRNIQKYRYELSWREQSYH 276 Query: 294 LMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRL 353 L+ + P++ + + + + +IEW D +AWK G TG+P IDA MRQL G++HNR Sbjct: 277 LLYYNPTL-LSENYKTFPNRIEWENDEDNFEAWKHGETGYPFIDAGMRQLEQEGYIHNRP 335 Query: 354 RMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTI 413 R ASFL K LLVDWR G +F +L+D D A+N WQW ASTG DSV RIF+P Sbjct: 336 RQNVASFLTKHLLVDWREGARHFRKRLVDHDPANNAASWQWTASTGTDSV-DVRIFDPVA 394 Query: 414 QGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWL--DKNDLSLNYPLPIVDHKKACHHTL 471 Q ++D ++ ++PEL VP+ I + ++ +L+ +Y PIVD A Sbjct: 395 QMSKYDSGADYVTEYVPELRGVPSTKIVDWPTLSDGEREELAPDYYHPIVDRNAAYERAQ 454 Query: 472 NQYYAA 477 + A Sbjct: 455 RVFETA 460 >gi|284173137|ref|ZP_06387106.1| Deoxyribodipyrimidine photo-lyase [Sulfolobus solfataricus 98/2] gi|261600969|gb|ACX90572.1| Deoxyribodipyrimidine photo-lyase [Sulfolobus solfataricus 98/2] Length = 431 Score = 316 bits (810), Expect = 5e-84, Method: Composition-based stats. Identities = 151/473 (31%), Positives = 215/473 (45%), Gaps = 49/473 (10%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHG--ISARQSHFIYASLLQV 68 L R DLR+ DN L A N + KVI FI P Q S +F+ SL ++ Sbjct: 4 LFIFRRDLRLDDNTGLIKALGNCE-KVIPTFILDPRQVGDENQYKSEFAINFMINSLNEL 62 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128 L ++G + F + E + S V ++ N Y RD+ + K + Sbjct: 63 NDELGKRGSRLYVY----FGLAEEVIKSLLK--DVDAVYLNEDYTPFSKMRDERIRKYCE 116 Query: 129 HRVIC-KSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187 R KSF+D +L N YK +T F A+ V+ +++ + Sbjct: 117 ERGKVMKSFEDYLLTSKNDFKN-----YKNFTTFYNAVKNKQVRKPIQNNYTNYYK---- 167 Query: 188 VTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSP 247 D G + L ++ + K Y +RD A + LSP Sbjct: 168 ------NSLGDEYELPPSQGERGGRKEGLKLIDR---AKQIDYS-RRDFVAEDNRTFLSP 217 Query: 248 YLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPF 307 +L G LS R+ + L + + +L WR+FY L+A+Y +P Sbjct: 218 HLKFGTLSVREVYYSLVDNQA------------IIRQLYWRDFYT-LLAYYNERVFYEPL 264 Query: 308 IPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLV 367 IEW + LLQAW G TG+PIIDA MRQLN G M NR+RM+TA FLVK LL+ Sbjct: 265 RREYSCIEWGNNEKLLQAWVHGKTGYPIIDAGMRQLNQTGDMPNRVRMLTAFFLVKVLLI 324 Query: 368 DWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRH 427 DW+IGE YF S+L+D D + NNG WQW AS G D + FR+F+P Q +DP+ +I+ Sbjct: 325 DWKIGERYFASKLIDYDPSVNNGNWQWIASVGTDYI--FRVFDPWKQQITYDPEAKYIKR 382 Query: 428 WLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQ 480 W+ EL + + IH + + K NYP PIVD + + Y K Q Sbjct: 383 WVKELEDYDAKIIHNAYKYTLK-----NYPNPIVDWRIRINLAKRLYERCKDQ 430 >gi|268679778|ref|YP_003304209.1| deoxyribodipyrimidine photo-lyase [Sulfurospirillum deleyianum DSM 6946] gi|268617809|gb|ACZ12174.1| Deoxyribodipyrimidine photo-lyase [Sulfurospirillum deleyianum DSM 6946] Length = 452 Score = 316 bits (809), Expect = 7e-84, Method: Composition-based stats. Identities = 129/472 (27%), Positives = 210/472 (44%), Gaps = 33/472 (6%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 ++W R DLR+ D+ L + + +V+ +FI + R+ FI+ +L ++ Sbjct: 4 VLWFRRDLRVDDSMLL-----SVEGEVLPIFIFDTHILNSLPKTDRRVAFIFEQVLSLKA 58 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130 L G+ + + SY + ++ + Y+ RD+ + L+ Sbjct: 59 KLKALGLDLALFYGTPLEVF-----SYLKTLGFSDVYASVDYDAYAKERDEKVGAILR-- 111 Query: 131 VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTP 190 + +DS L P +L Y V+TPF KA Q Q + RL Sbjct: 112 --FHALNDSYLFEPTEVLKKDGTPYLVFTPFYKACQQLYTQFHVLKYTKATQRLCEFDCS 169 Query: 191 SNIPRFFDYPFQAIDPMFPIGE-------QNALHILRKFCKEKVYYYVEQRDIPAIQGTS 243 + + M IG L F K+ Y RD A TS Sbjct: 170 ALWHIEKESKTALHVKMENIGFIPLHVKLLEPHKALEAF-TCKLDAYAHDRDFLACDATS 228 Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCM 303 LS +L G + R+ ++ L K + +LI+REFY +L+ +P + Sbjct: 229 HLSVHLRFGTIGIREVV-----RYLVALKKQGHTTEPFFRQLIFREFYAYLLYHFPHLAW 283 Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363 + + ++ + + TG+P++DAA+R+L G MHNR RM+ SF K Sbjct: 284 KN----YKYTPPYEENQESYERFITAQTGYPLVDAAVRELLETGLMHNRARMVVGSFFTK 339 Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423 LL+ W+ GE +F LLD D ++N WQW A TG D PYFRIFNP Q +FD + Sbjct: 340 HLLLPWQRGEAFFAEHLLDYDASANILSWQWCAGTGIDPQPYFRIFNPYAQSLKFDKEAL 399 Query: 424 FIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYY 475 +I+ +LP+L ++P+ +H S+L +++ +YP PI+ H+KA LN + Sbjct: 400 YIKRFLPQLRDIPSSLLHK-ESYLLSHNIP-HYPKPIIQHEKARKRFLNAFA 449 >gi|254445301|ref|ZP_05058777.1| deoxyribodipyrimidine photolyase family [Verrucomicrobiae bacterium DG1235] gi|198259609|gb|EDY83917.1| deoxyribodipyrimidine photolyase family [Verrucomicrobiae bacterium DG1235] Length = 522 Score = 316 bits (809), Expect = 7e-84, Method: Composition-based stats. Identities = 118/495 (23%), Positives = 207/495 (41%), Gaps = 47/495 (9%) Query: 10 HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69 +VW + DLR+ D++ L+ A V+ ++I P + I+ FI SL + Sbjct: 7 SIVWFKRDLRVHDHRPLFEASRLG--PVLPLYIVEPILLDSNDIAPCHGSFINDSLRDLD 64 Query: 70 KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEV-RRDKLLEKRLQ 128 SL + G H+ + + E S +LF + + RRD+ + + Sbjct: 65 TSLRKLGTALVVHEGT----ATEVFQSLLKSIGPFRLFSHEETGNALTFRRDRDVAAWTK 120 Query: 129 -HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187 R+ + P ++ + + + + A P+ + Sbjct: 121 TQRIQWIEY------PQNGVIRRLTTRDGWADRWHERMKVEQISAPKHIAPILKSQ---- 170 Query: 188 VTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIP--AIQGTSQL 245 +P++ P+ P A + GE A L F +E+ Y ++ P A S+L Sbjct: 171 -SPTDFPKVLRTP-PANPSLQAGGETPANKCLASFLQERGRAYHKEMSSPLTADTSCSRL 228 Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGA---------------FSWLNELIWREF 290 SPYL+ G +S + + L + + S+L+ W Sbjct: 229 SPYLAYGCISMKTVVQSTWTKAAHLREQKAAAKAEKTPYHERYSLMALRSFLSRCHWHCH 288 Query: 291 YRHLMAFYPSVCMGKPFIPWTEKIEW-NKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWM 349 + + PS+ KPF P E + + L+AW+ G+TG+P +DA +R LNT W+ Sbjct: 289 FIQKLEDQPSIEF-KPFNPALEGLRRLEPNHAFLEAWQTGHTGYPFVDACIRYLNTHKWI 347 Query: 350 HNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIF 409 + R+R + SF DL +DWR +++ LD + + Q +G + RI+ Sbjct: 348 NFRMRAMLVSFAAYDLWIDWRHFKDHLARAFLDYEPGIHYSQIQMQ--SGTTGINTLRIY 405 Query: 410 NPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND------LSLNYPLPIVDH 463 NP QG+ DP+G FI+ W+PEL +P +++H P + L +YPLPI+DH Sbjct: 406 NPIKQGRDQDPRGIFIKRWVPELAAIPAEHVHEPWTLSQTQQKKLSCLLGKHYPLPIIDH 465 Query: 464 KKACHHTLNQYYAAK 478 +A ++ A + Sbjct: 466 AEAIRKARVKFKALR 480 >gi|256393411|ref|YP_003114975.1| deoxyribodipyrimidine photo-lyase [Catenulispora acidiphila DSM 44928] gi|256359637|gb|ACU73134.1| Deoxyribodipyrimidine photo-lyase [Catenulispora acidiphila DSM 44928] Length = 473 Score = 315 bits (808), Expect = 8e-84, Method: Composition-based stats. Identities = 129/452 (28%), Positives = 194/452 (42%), Gaps = 27/452 (5%) Query: 14 LRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQKSLS 73 DLR+ DN L AA ++D +V+ +F+ IS + F+ SL + +L Sbjct: 28 FTRDLRVHDNPVLAAAAASADGRVVPLFVLDGGIL--PRISETRRRFLEESLADLDAALR 85 Query: 74 QKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHRVIC 133 G D + + + ++ R L L+ Sbjct: 86 ALGGRLVLRSG----DVVAEVCRVVAEVDAVEVHLASDVTAYAHERQDALAAALRANGAE 141 Query: 134 KSFDD--SVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPS 191 D + PPG + + + V+TP+ + + ++A + + + G P+ Sbjct: 142 LHLHDQVHTIQPPGELRPNDRDHFSVFTPYWRRWAEMPLRAPASAPRLTVPDIAGLELPT 201 Query: 192 NIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSI 251 + + GE +++ + V Y + D A TS+LSPYL Sbjct: 202 SADSTLSGGLR-------GGETQGRKRAKQWLGKAVEDYEDIHDDLAANATSKLSPYLHF 254 Query: 252 GVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWT 311 G +S + R P SG ++L +L WR+F+ +MA P P Sbjct: 255 GCVSATELAARA------SRDHPGSGTEAFLRQLCWRDFHHQVMAARPDAA-HTDLRPRG 307 Query: 312 EKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRI 371 W D L AW G TG PI+DA MRQL GWMHNR R+ITA FL K L +DWR Sbjct: 308 A---WVDDPEALDAWTAGRTGIPIVDAGMRQLAAEGWMHNRARLITAGFLTKTLGIDWRS 364 Query: 372 GEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPE 431 G +F LLD D+A+N WQW A TG D+ P R+ NP Q R+DP G ++R ++PE Sbjct: 365 GAAHFAHHLLDADVANNILNWQWVAGTGMDTRP-NRVMNPLRQATRYDPSGEYVRRYVPE 423 Query: 432 LNNV-PTQYIHAPHSWLDKNDLSLNYPLPIVD 462 L ++ +H P L+YP PIV+ Sbjct: 424 LADLSDAADVHQPWRLGPVALKELDYPAPIVE 455 >gi|50306241|ref|XP_453092.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140] gi|49642226|emb|CAH00188.1| KLLA0D00462p [Kluyveromyces lactis] Length = 595 Score = 315 bits (808), Expect = 8e-84, Method: Composition-based stats. Identities = 145/535 (27%), Positives = 230/535 (42%), Gaps = 81/535 (15%) Query: 11 LVWLRNDLRITDNKALYAACHNSD-AKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69 + W R DLR+ DN L A + S V A+++ W H S + F +L + Sbjct: 73 IHWFRGDLRVRDNTGLAYALNQSKSGSVEALYVINEHDWIAHMESGWKLKFQLDALRSLS 132 Query: 70 KSLSQKGIVFQYHQ-------CSNFDDSIEWLDSYCLQQRVTK----------------- 105 + L++ G+ SN + +W + +K Sbjct: 133 RELAKLGVRLHVKYFIPESPCLSNSREYAQWFSHIIEEIAASKNYDGNSKDDTKDDTDAD 192 Query: 106 -----------------------LFYNRQYEINEVRRDKLLEKR-----LQHRVICKSFD 137 + N QYE++E+ RD + + K F Sbjct: 193 EPALKKRKKDNDENQKGGSPNILVTANLQYEVDELYRDLKICRLQTQSSNSANFTLKLFH 252 Query: 138 DSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPSNIPRFF 197 D ++ PG + Y ++TP+ K + L + + Sbjct: 253 DMCIIEPGILKTGKGSQYTIFTPWYKKWVSFLEANQKDKHTICIEASIPQSSNREKVNPE 312 Query: 198 DYPFQAIDP-----------MFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246 + +Q D + E+ AL L +F ++ Y +D+ + GTS LS Sbjct: 313 EIKYQLPDKFMSEMPEQTLNIPKADEETALKKLTEFISKRASKYNNDKDLLDLTGTSLLS 372 Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLL----IKPKSGAFSWLNELIWREFYRHLMAFYPSVC 302 Y++ GV+S R N+ + L IK + +++ E+ WR+FY+H ++++P + Sbjct: 373 CYVTSGVISARTILNQSYQANNSRLMNKDIKKNNSLETFIKEVAWRDFYKHAISYWPFLS 432 Query: 303 MGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLV 362 M PF T I+W D L + W G TG PI+DA M ++ G+++NR RMITASFL Sbjct: 433 MDLPFKFETLNIKWENDVFLFEKWCYGETGIPIVDAIMLKMLKTGYINNRSRMITASFLA 492 Query: 363 KDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQG 422 K+LL+DWR GE +F L+D D ASN GGW + ASTG D PYFR+FN +Q +++DP+G Sbjct: 493 KNLLIDWRWGERWFRKHLIDYDTASNVGGWGFCASTGIDCQPYFRVFNMKLQSEKYDPEG 552 Query: 423 TFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477 FIRHWL E + + +H P P IVD + + L ++ Sbjct: 553 KFIRHWL-ENDENDSDNVHEPK------------PNAIVDLRDSRERVLERFREV 594 >gi|256372081|ref|YP_003109905.1| Deoxyribodipyrimidine photo-lyase [Acidimicrobium ferrooxidans DSM 10331] gi|256008665|gb|ACU54232.1| Deoxyribodipyrimidine photo-lyase [Acidimicrobium ferrooxidans DSM 10331] Length = 456 Score = 315 bits (808), Expect = 9e-84, Method: Composition-based stats. Identities = 152/477 (31%), Positives = 222/477 (46%), Gaps = 35/477 (7%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 + ++WLR DLR D+ DA AVF+ P R S + ++ +L ++ Sbjct: 1 MRVLWLRGDLRSYDHAGWSE-LGIGDA---AVFVLDPGLAR--HASPIRRAWLAGALGEI 54 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128 + + L + T++ ++ RR + L+ Sbjct: 55 DDWTDHRLSLLHARHGD-------ELAAIFAAWGATEVLTHQGVAPGIRRRIDATRRSLE 107 Query: 129 HRVICKSFDDS-VLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187 R I DS + PGS+ ++V+ F + + P P Sbjct: 108 ARGIALRVVDSAYAVAPGSLTRPEGGAWRVFGAFWRQWRPAVHGLGPFEATAP------P 161 Query: 188 VTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSP 247 F + D ++ AL L +F ++ +Y RD PA+ TS+LSP Sbjct: 162 SLAVTERHFEPADLRPPDQPLLTPQRTALERLERFVDSRLAHYAADRDRPAVAATSELSP 221 Query: 248 YLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPF 307 L IG + PR L + A ++ EL WREFY H + +P + + Sbjct: 222 ALHIGAIHPRTILAALGDLDR---------ADRFVRELAWREFYAHALWHHPDL-VDLEL 271 Query: 308 IPWTEKIEWNKDSHL---LQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364 P +I W++ +AW G TGFPI+DA MR+L GW+HNR+RMI AS LVKD Sbjct: 272 DPTLRQIAWDEGDEADARFRAWCDGRTGFPIVDAGMRELAATGWLHNRVRMIVASLLVKD 331 Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424 L +DWR G +F + L D D+ASN G WQW A TG D+ PYFR+FNPT+QGK+FDP G + Sbjct: 332 LHLDWRRGAAWFEATLADADIASNRGNWQWVAGTGLDAAPYFRVFNPTLQGKKFDPDGHY 391 Query: 425 IRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481 +R W+PEL PT IH P W+ + + YPLPIVDH + L +Y AA+ + Sbjct: 392 VRRWVPELRACPTSLIHEPWRWVGRENAG--YPLPIVDHDRERREALARYDAARASA 446 >gi|254525619|ref|ZP_05137671.1| deoxyribodipyrimidine photolyase [Prochlorococcus marinus str. MIT 9202] gi|221537043|gb|EEE39496.1| deoxyribodipyrimidine photolyase [Prochlorococcus marinus str. MIT 9202] Length = 497 Score = 315 bits (807), Expect = 1e-83, Method: Composition-based stats. Identities = 108/479 (22%), Positives = 204/479 (42%), Gaps = 35/479 (7%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 ++++W + DLRI +N+AL + ++D ++ +FI E W Q S RQ F S++ + Sbjct: 4 INILWFKKDLRIDENEALNESLKDND--ILPIFIFEIEVWNQKTHSRRQWQFCKESIIDL 61 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQY-EINEVRRDKLLEKRL 127 + SL + G + I+ + + + ++ +++ + +RD+ ++ Sbjct: 62 RNSLKEIGQPLIIRTG----NVIKIFEEISSKFNIVGIYSHQETGDWVTYKRDQEVKLWA 117 Query: 128 QHR-VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 ++ +I + F S+ + ++K + L++ LR P+ Sbjct: 118 ANKKIIWREFLQ------FSVFRGNINRDDWSKNWKKNTERELIKRPLRINPI-----DF 166 Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIP--AIQGTSQ 244 + + F + G + + ++ F EK+ Y + P + S+ Sbjct: 167 DIGKIPDEKIFSFKKDECKGSLKGGRKKGIERMQYFFNEKLNSYSKNISSPEKSFDSCSR 226 Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304 LSPY+S G +S ++ + + + + + + L W + + P + Sbjct: 227 LSPYISWGCISLKEIFY-------KANLHKNNNSIMFKSRLTWHCHFIQKLESEPELEFH 279 Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364 F P+ + K++ LL W QG TG+P IDA MR LN GW++ R+R + SF + Sbjct: 280 -DFHPYFKNSR-TKNTELLLLWSQGNTGYPFIDACMRSLNFNGWINFRMRAMLMSFASYN 337 Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424 L + W+ ++ +D + + Q +G S+ RI+NP QGK DP G F Sbjct: 338 LWLPWQDSGSELANKFVDYEPGIHWNQCQMQ--SGTTSINTNRIYNPIKQGKDHDPDGEF 395 Query: 425 IRHWLPELNNVPTQYIHAPHSWLD---KNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQ 480 I+ W+PEL N+ +IH P L Y PIVD K + ++ Sbjct: 396 IKKWVPELKNIAIDFIHEPWLLGKFNCDEYAKLQYNKPIVDISKTSREARKKIQEITQK 454 >gi|297565815|ref|YP_003684787.1| Deoxyribodipyrimidine photo-lyase [Meiothermus silvanus DSM 9946] gi|296850264|gb|ADH63279.1| Deoxyribodipyrimidine photo-lyase [Meiothermus silvanus DSM 9946] Length = 435 Score = 315 bits (807), Expect = 1e-83, Method: Composition-based stats. Identities = 145/472 (30%), Positives = 217/472 (45%), Gaps = 43/472 (9%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 ++LVW R DLR D+ ALY A + ++ + P S R+ + YA+ + Sbjct: 1 MNLVWHRADLRTHDHPALYQAAQSG--PLVGLVNLDPHILE--PTSPRRRAWFYANTQAL 56 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128 +++ +++G + + E L + V ++F Y + RD E+ + Sbjct: 57 REAYARRGGTLLVRYGTPW----EVLPQVVAELGVQRVFAIASYTPYGLHRDHKTEQAIP 112 Query: 129 HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188 R+ + + + PPG +L Y VYTP+ K + LP P Sbjct: 113 GRI--HWCEGNHVQPPGRLLKPDGTPYTVYTPYAKRWWGEAERLGEGLLPPGR----FPA 166 Query: 189 TPSNIPRFFDYPFQAID-PMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSP 247 P + D P+ P GE+ AL L F ++++ Y + RD QG S+LSP Sbjct: 167 LERPDLELGQVPQEPSDVPLPPPGEEAALQALEAFLRDRLPTYHQTRDRLDGQGGSRLSP 226 Query: 248 YLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPF 307 Y ++GVLSPR +R GA W+ EL WR+F L+ P + + F Sbjct: 227 YFTLGVLSPRLAVHRALHI-------GGEGARKWVAELAWRDFSADLLYHRPQ-MLHQSF 278 Query: 308 IPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLV 367 P + + W D L +AWK G TG ++DAAMR+LN G+M NR RM A F VK L+ Sbjct: 279 DPRWDGLPWVDDPELFEAWKAGETGIALVDAAMRELNATGFMSNRARMAVAQFAVKLALL 338 Query: 368 DWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRH 427 W+ E++F ++LLDGD ASN GWQWA G D+ PYFR+FN Q + DP+G +++ Sbjct: 339 PWQKAEQHFKNRLLDGDTASNLQGWQWAGGLGVDAAPYFRVFNLERQVAQHDPEGVWLKR 398 Query: 428 WLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479 WLPE P Q P++D + A L K Sbjct: 399 WLPEWGGPPVQ--------------------PVIDLEAARQRYLAAAARIAK 430 >gi|78212258|ref|YP_381037.1| deoxyribodipyrimidine photo-lyase type I [Synechococcus sp. CC9605] gi|78196717|gb|ABB34482.1| Deoxyribodipyrimidine photolyase [Synechococcus sp. CC9605] Length = 493 Score = 315 bits (807), Expect = 1e-83, Method: Composition-based stats. Identities = 119/478 (24%), Positives = 192/478 (40%), Gaps = 35/478 (7%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 ++ +VW + DLRI D++ L AA V+ +++ PE WRQ S RQ F SLL Sbjct: 2 AALQIVWFKRDLRIVDHQPLAAAVERG--LVLPLYVVEPELWRQPDASERQWMFCRESLL 59 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYE-INEVRRDKLLEK 125 +++++L+ +G D ++ L+ Q + L+ + + +RDK + Sbjct: 60 ELRQALADRGQPLVVR----AGDVVQVLERARRQFGIDGLWSHEETGNGWTYQRDKRVGA 115 Query: 126 RLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185 + I + LP + + + + + + I Sbjct: 116 WARRHGIAW-----MELPQFGVTRRMHSRNGWAKRWEVQMTEPITPVPAALQALDGIDHG 170 Query: 186 GPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIP--AIQGTS 243 D A G L L F + + Y P A G S Sbjct: 171 VIPERPCSELLLD----ACPQRQIGGRSTGLEELNDFLQHRAQRYQRSMSSPNTAFTGCS 226 Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCM 303 +LS YL+ G LS R+ + G S+ + L W + + P++ Sbjct: 227 RLSTYLTWGCLSMREVLQTSR-------THSGRGVSSFESRLHWHCHFIQKLEDQPAIEF 279 Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363 F P+ I D+ L AW +G TG P +DA MR L GW++ R+R + SF Sbjct: 280 S-DFHPFMRGIR-AADAERLTAWSEGRTGVPFVDACMRALRAHGWINFRMRAMLMSFASY 337 Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423 +L + WR + Q +D + + Q +G+ S+ RI+NP QG DPQG Sbjct: 338 NLWLPWRDSGLHLARQFVDYEPGIHWSQCQMQ--SGSTSINTIRIYNPIKQGMDHDPQGL 395 Query: 424 FIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481 FIR W PEL +VPT +IH P L P PIVD + ++ + ++ + Sbjct: 396 FIRQWCPELKDVPTIHIHEPWM------LGGGMPAPIVDVTASMQDAKDRIWDIRRSA 447 >gi|260436401|ref|ZP_05790371.1| deoxyribodipyrimidine photo-lyase type I [Synechococcus sp. WH 8109] gi|260414275|gb|EEX07571.1| deoxyribodipyrimidine photo-lyase type I [Synechococcus sp. WH 8109] Length = 493 Score = 314 bits (805), Expect = 2e-83, Method: Composition-based stats. Identities = 119/477 (24%), Positives = 195/477 (40%), Gaps = 37/477 (7%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 ++ +VW + DLRI D++ L AA V+ +++ PE W+Q S RQ F SLL Sbjct: 2 AALQIVWFKRDLRIVDHQPLAAAAERG--LVLPLYVVEPELWQQPDASERQWMFCRESLL 59 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYE-INEVRRDKLLEK 125 +++++L+ +G D ++ L+ Q + L+ + + +RDK + Sbjct: 60 ELRQALADRGQPLVVR----AGDVVQVLERARRQFGIDGLWSHEETGNGWTYQRDKRVGA 115 Query: 126 RLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185 + I + +P + + +Q + + ++ Sbjct: 116 WARRHGIAWTE-----IPQFGVTRQMRSRNGWAKRWE---VQMMEPITPVPAALQSLEGI 167 Query: 186 GP-VTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIP--AIQGT 242 P V P R + P G L L F + + Y P A G Sbjct: 168 DPGVIPERPCR--ELPVDGCPQRQTGGRSIGLGELSDFLQHRASRYQRAMSSPNTAFTGC 225 Query: 243 SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVC 302 S+LS YL+ G LS R+ + G S+ + L W + + P++ Sbjct: 226 SRLSAYLTWGCLSMREVLQTSR-------TNSGRGVSSFESRLHWHCHFIQKLEDQPAIE 278 Query: 303 MGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLV 362 F P+ I D+ L AW +G TG P +DA MR L GW++ R+R + SF Sbjct: 279 YS-DFHPFMRGIR-ADDAERLTAWSEGRTGVPFVDACMRALRAHGWINFRMRAMLMSFAS 336 Query: 363 KDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQG 422 +L + WR + Q +D + + Q +G+ S+ RI+NP QG DPQG Sbjct: 337 YNLWLPWRDSGLHLARQFVDYEPGIHWSQCQMQ--SGSTSINTIRIYNPIKQGMDHDPQG 394 Query: 423 TFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479 FIR W PEL +VP +IH P L P PIVD + ++ + ++ Sbjct: 395 LFIRQWCPELKDVPKIHIHEPWM------LGGGMPPPIVDVTTSMQDAKDRIWEVRR 445 >gi|321475718|gb|EFX86680.1| hypothetical protein DAPPUDRAFT_307800 [Daphnia pulex] Length = 520 Score = 314 bits (805), Expect = 2e-83, Method: Composition-based stats. Identities = 142/488 (29%), Positives = 212/488 (43%), Gaps = 34/488 (6%) Query: 1 MKATTAMS--VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHG------ 52 M MS V + RNDLR DN+ + A ++D V+ ++ P + Sbjct: 1 MIRILKMSNRVAICLFRNDLRYHDNEVIALAHKSAD-FVLPLYCFDPRHFEGTHHYKFPK 59 Query: 53 ISARQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQY 112 ++ F+ S+ +++L ++G + ++ S +VT L + Sbjct: 60 TGIFRTQFLLESVEDFRQTLVKRGSNLMIVHSKPEEALLKIFKSLTG-LKVT-LILQTEV 117 Query: 113 EINEVRRDKLLEKRLQH-RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQ 171 E +K L+K Q + + S L G + + YT FRK + + L Sbjct: 118 TKEETDVEKRLQKICQEIKASYINCWGSTLYHKGDLPFQINHVPDSYTGFRKDVEEKLRI 177 Query: 172 ADLRSLP---VPAIRLTGPVTPSNIPRFFDY----PFQAIDPMFP--IGEQNALHILRKF 222 S+P P + N+P P FP GE AL L+ + Sbjct: 178 RPEISMPDKMKPVPTFAHEIPWGNLPTIEALNSTKPIPNSSSAFPFNGGETAALLRLKSY 237 Query: 223 CKEKVY--YYVEQRD-IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAF 279 + Y E R+ + +++ S +LS G LSPR+ L E +L + Sbjct: 238 LWDTNAVAQYKETRNGLIGSDYSTKFSSWLSHGCLSPRRIHWEL--EKYELQRTKNQSTY 295 Query: 280 SWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAA 339 EL+WR++++ + Y P + +W KD L +AW+ G TG P +DA Sbjct: 296 WVRFELLWRDYFKFVSMKYGDRIF-YPNGMKGRRQQWKKDMELFKAWQMGKTGVPFVDAN 354 Query: 340 MRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTG 399 MR+L GWM NR R ASFLVKDLL+DWR+G E+F S LLD D+ SN G W + A G Sbjct: 355 MRELLATGWMSNRGRQNVASFLVKDLLLDWRLGAEWFESLLLDHDVCSNYGNWNYVAGIG 414 Query: 400 NDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSW------LDKNDLS 453 ND R FN Q +D +G +IR W+PEL +P IH+P K L Sbjct: 415 NDPREN-RKFNMIKQSMDYDLEGNYIRMWVPELREIPGSKIHSPWMLSSGALSAAKIRLG 473 Query: 454 LNYPLPIV 461 NYP P+V Sbjct: 474 DNYPNPVV 481 >gi|326920457|ref|XP_003206489.1| PREDICTED: cryptochrome-2 [Meleagris gallopavo] Length = 540 Score = 314 bits (805), Expect = 2e-83, Method: Composition-based stats. Identities = 109/444 (24%), Positives = 172/444 (38%), Gaps = 30/444 (6%) Query: 60 FIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRR 119 F+ SL + SL + + D + VT+L + E R Sbjct: 21 FLLQSLEDLDNSLRKLNSRLFVVRGQPTD----VFPRLFKEWGVTRLTFEYDSEPFGKER 76 Query: 120 DKLLEKRLQH-RVICKSFDDSVLLPPGSILNHAL-QMYKVYTPFRKALIQNLVQADLRSL 177 D + K + V + L I+ + Y F+ + + + S Sbjct: 77 DAAIIKLAKEAGVEVVVENSHTLYDLDRIIELNGNKPPLTYKRFQAIISRMELPKKPVSS 136 Query: 178 PVPAIRLTGPVTPSNIP-------RFFDYPFQA---IDPMFPIGEQNALHILRKFCKEKV 227 V T V + F ++ GE AL L K + K Sbjct: 137 IVSQQMETCKVDIQENHDDMYGVPSLEELGFPTDGLAPAVWQGGETEALARLDKHLERKA 196 Query: 228 YYYVEQRDIPAIQGT----SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLN 283 + +R + LSPYL G LS R + RL E + + + + S Sbjct: 197 WVANYERPRMNANSLLASPTGLSPYLRFGCLSCRLFYYRLWELYKKVK-RNSTPPLSLYG 255 Query: 284 ELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQL 343 +L+WREF+ P + P +I W+K+ L W +G TGFP IDA M QL Sbjct: 256 QLLWREFFYTAATNNPKFDRMEG-NPICIQIPWDKNPEALAKWAEGKTGFPWIDAIMTQL 314 Query: 344 NTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDS 402 GW+H+ R A FL + DL + W G F LLD D + N G W W S Sbjct: 315 RQEGWIHHLARHAVACFLTRGDLWISWESGVRVFDELLLDADFSVNAGSWMW-LSCSAFF 373 Query: 403 VPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLD------KNDLSLNY 456 +F + P G+R DP G +++ +LP+L P++YI+ P + + K + ++Y Sbjct: 374 QQFFHCYCPVGFGRRTDPSGDYVKRYLPKLKGFPSRYIYEPWNAPESVQKAAKCIIGVDY 433 Query: 457 PLPIVDHKKACHHTLNQYYAAKKQ 480 P P+V+H + + + +Q Sbjct: 434 PKPMVNHAETSRLNIERMKQIYQQ 457 >gi|170059953|ref|XP_001865587.1| cryptochrome-1 [Culex quinquefasciatus] gi|167878532|gb|EDS41915.1| cryptochrome-1 [Culex quinquefasciatus] Length = 789 Score = 314 bits (805), Expect = 2e-83, Method: Composition-based stats. Identities = 116/493 (23%), Positives = 178/493 (36%), Gaps = 74/493 (15%) Query: 10 HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69 + W R LR+ DN AL ++ A + VF+ P + + F+ L + Sbjct: 52 TVHWFRKGLRLHDNPALREGLKDA-ASLRCVFVIDPWFAGSSNVGINKWRFLLQCLEDLD 110 Query: 70 KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH 129 ++L Q + + L + T L + E RD + + + Sbjct: 111 RNLRQLNSRLFVIRG----QPADALPKLFKEWGTTCLTFEEDPEPFGKVRDHNISEMCKE 166 Query: 130 -RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG-- 186 + S L I+ + + D P PAI L Sbjct: 167 LNIDVISAVSHTLYKLERIIEKNNGRAPLTY---NQFQAIIASMDAPPQPEPAITLAAIG 223 Query: 187 -PVTPSN--------IPRFFDYPFQAID---PMFPIGEQNALHILRKFCKEKVYYYVEQR 234 VTP +P + F+ P++ GE AL L + + K + Sbjct: 224 RAVTPQCDDHDDKYGVPTLEELGFETEGLKPPIWVGGETEALARLERHLERKAW------ 277 Query: 235 DIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHL 294 IK S +L WREF+ Sbjct: 278 ------------------------------------KIKKAYPPLSLHGQLFWREFFYCA 301 Query: 295 MAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLR 354 P+ P +I W++++ L W G TGFP IDA M QL GW+H+ R Sbjct: 302 ATKNPNFDKM-AGNPICVQIPWDRNAEALAKWASGQTGFPWIDAIMTQLREEGWIHHLAR 360 Query: 355 MITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTI 413 A FL + DL + W G + F LLD D + N G W W S + +F + P Sbjct: 361 HAVACFLTRGDLWISWEEGMKVFEELLLDADWSVNAGMWMW-LSCSSFFQQFFHCYCPVK 419 Query: 414 QGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLD------KNDLSLNYPLPIVDHKKAC 467 G++ DP G +IR +LP L N PT+YIH P + + + + NYPLP+V+H A Sbjct: 420 FGRKADPNGDYIRRYLPVLKNFPTRYIHEPWNAPESVQRAARCIIGKNYPLPMVNHAIAS 479 Query: 468 HHTLNQYYAAKKQ 480 + + +Q Sbjct: 480 RANMERIKQVYQQ 492 >gi|78185218|ref|YP_377653.1| deoxyribodipyrimidine photolyase [Synechococcus sp. CC9902] gi|78169512|gb|ABB26609.1| Deoxyribodipyrimidine photo-lyase type I [Synechococcus sp. CC9902] Length = 496 Score = 314 bits (805), Expect = 2e-83, Method: Composition-based stats. Identities = 127/482 (26%), Positives = 202/482 (41%), Gaps = 45/482 (9%) Query: 8 SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67 ++ +VW + DLRI D++ L A V+ +++ W+Q S RQ F SLL Sbjct: 3 ALQIVWFKRDLRIVDHRPLIEASKRG--PVLPLYVVETRLWQQPDSSKRQWLFCRESLLD 60 Query: 68 VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYE-INEVRRDKLLEKR 126 +Q++L+ G D +E L+ LQ + L+ + + +RDK + Sbjct: 61 LQRALATLGQPLVLRSG----DVVEVLERARLQFGIDALWSHEETGNGWTYQRDKRVGAW 116 Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 + IC V +P + + + + + P RL G Sbjct: 117 AKQHGICW-----VEIPQFGVTRRLTSRNGWAKRW-----EEQMAEPITQPPTSLPRLDG 166 Query: 187 PVTPSNIPRFFDYPFQAIDPMFP-----IGEQNALHILRKFCKEKVYYYVEQRDIP--AI 239 + + D P AI P G + R F ++V Y P A Sbjct: 167 L----DPGKIPDLPPGAIAPDPCPHRQLGGRRQGELEFRDFLNQRVERYCSSISSPNKAF 222 Query: 240 QGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYP 299 G S+LS YL+ G LS R+ + + G S+ + L W + + P Sbjct: 223 TGCSRLSAYLTWGCLSMREVLQQSRTV-------KGRGVNSFGSRLHWHCHFIQKLEDEP 275 Query: 300 SVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITAS 359 S+ + F P + + D LQAW +G TG P +DA MR L GW++ R+R + S Sbjct: 276 SIEF-QDFHPLMRGLR-DFDRVKLQAWAEGRTGVPFVDACMRALRAHGWINFRMRAMLMS 333 Query: 360 FLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFD 419 F +L + WR + Q +D + + Q +G+ S+ RI+NP QG+ D Sbjct: 334 FASYNLWLPWRQSGLHLARQFVDYEPGIHWSQCQMQ--SGSTSINTIRIYNPIKQGRDHD 391 Query: 420 PQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479 P+G FIRHW PEL +VP YIH P +L P PIVD + N+ ++ ++ Sbjct: 392 PEGLFIRHWCPELRDVPEIYIHEPW------ELGGGMPSPIVDVTASMQEAKNRIWSIRR 445 Query: 480 QS 481 + Sbjct: 446 SA 447 >gi|146097530|ref|XP_001468129.1| DNA repair enzyme; Deoxyribodipyrimidine photolyase [Leishmania infantum] gi|134072496|emb|CAM71209.1| putative DNA repair enzyme [Leishmania infantum JPCM5] Length = 541 Score = 314 bits (805), Expect = 2e-83, Method: Composition-based stats. Identities = 145/530 (27%), Positives = 214/530 (40%), Gaps = 68/530 (12%) Query: 4 TTAMSVHLVWLRNDLRITDNKALYAACHNSDA---KVIAVFIATPEQW---RQHGISARQ 57 T V L R DLR+ DN L A C + V+ F P Q R Sbjct: 22 TVREEVALFLFRRDLRVVDNTGLQALCDEAARRFIPVLPAFFFNPIQCDKKRNPYFGDAF 81 Query: 58 SHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEV 117 F SL+ + + +Q + S+ D DS V L +N Y + Sbjct: 82 FQFFCESLIDLDGA-AQLNGGLVCLRGSDEDCLQRIRDS---GYEVKVLGFNEDYTPFAL 137 Query: 118 RRDKLLEKRLQHRVIC--KSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLR 175 RD+LL + I D L P ++ ++ Q Y V+TPF + Sbjct: 138 ARDRLLRAYADKQGIVCVTGPHDYSLRPLDEVVKNSEQPYSVFTPFYNKFTAEHARRVAV 197 Query: 176 SLPVPAIRLTGPVT--PSNIPRFFDYPFQAIDPMFP-----IGEQNALHILRKFCKEKVY 228 LPV ++ + P + P G L L C E++ Sbjct: 198 PLPVNVSKVQSMLVSRPKKCMGHHLVDPALVYAHMPQVQDHGGRTEGLKRLA--CVERLK 255 Query: 229 YYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWR 288 Y + RD A TS LSP++ G +S R+ W+ + + +L+WR Sbjct: 256 QYADARDDIAGDRTSHLSPHMKCGTVSTREVWHASVQAL--------GTGHPFTRQLVWR 307 Query: 289 EFYRHLMAFYPSVCMGK--------------------PFIPWTEKIEWNKDSHLLQAWKQ 328 EFY L P + G+ PF P + +W+ + +A+K+ Sbjct: 308 EFYAMLAFTRPRLLQGQLNSFIGQQDIVKATQPKQNAPFQPSYDNFKWSWKAEHFEAFKE 367 Query: 329 GYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASN 388 G TG P++DAA+R L GW HNR R++ ++F VK L +DWR E +F + +D D A+N Sbjct: 368 GRTGVPLVDAAVRCLTATGWCHNRCRLVISNFAVKVLGIDWRECERWFATVAVDYDAANN 427 Query: 389 NGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLD 448 NGGW W++ G D+ PYFR FN Q +RFDP FI W+PEL VP +H + Sbjct: 428 NGGWLWSSGQGADAQPYFRTFNAFRQSERFDPDCKFIFQWVPELAKVPPSVVHHWEGYCA 487 Query: 449 KN-------------------DLSLNYPLPIVDHKKACHHTLNQYYAAKK 479 + + +YP PIVD K A + ++ K Sbjct: 488 RARGKATATHSRKRSGQGNAEEYPTSYPAPIVDIKAATKAVVEEFKKYSK 537 >gi|86137240|ref|ZP_01055818.1| Deoxyribodipyrimidine photolyase [Roseobacter sp. MED193] gi|85826564|gb|EAQ46761.1| Deoxyribodipyrimidine photolyase [Roseobacter sp. MED193] Length = 502 Score = 314 bits (804), Expect = 2e-83, Method: Composition-based stats. Identities = 112/479 (23%), Positives = 188/479 (39%), Gaps = 26/479 (5%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 + +VW + DLR +D+ AL A V+ +++ P+ W+Q S RQ F+ +L ++ Sbjct: 1 MQVVWFKRDLRCSDHAALTRAAQ--VGPVLPLYVVEPDLWQQPDASHRQWCFVAETLAEL 58 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYE-INEVRRDKLLEKRL 127 + L +G Q S +E L+ Q R++ L+ + + +RD + Sbjct: 59 RDDLKLRGQPLVVRQGSV----VEILEGLMRQGRLSALWSHEESGNGWTFQRDCRVAAWC 114 Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187 + I P + NH + L+ S P A P Sbjct: 115 RDNGI----------PWHELQNHGVWRRLQSRDGWAKRWDRLMAQPCASAPQLAPVDIVP 164 Query: 188 VTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIP--AIQGTSQL 245 + G L L F ++ +Y P S+L Sbjct: 165 GSIPTARDLG-LGSDVSPGRQSGGRGAGLERLESFLNQRGEHYQRAMSSPLEGTSACSRL 223 Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGA---FSWLNELIWREFYRHLMAFYPSVC 302 SPYL+ G +S R+ LL KS S+ L W + + P + Sbjct: 224 SPYLAWGAVSMREVAQANAARQRALLPAEKSWRKSLRSFSGRLHWHCHFIQKIEDEPRIE 283 Query: 303 MGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLV 362 + D+ LQAW++G TG+P +DA MR L + GW++ R+R + + Sbjct: 284 FENLHRLMDDLRPKTPDAARLQAWEKGETGYPFLDACMRCLRSTGWLNFRMRAMLMAVAA 343 Query: 363 KDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQG 422 L +DWR ++ D + + Q +G + RI+NP QG DP G Sbjct: 344 YHLWLDWRAPGQHLARMFTDYEPGIHWSQVQMQ--SGTTGINTVRIYNPVKQGFDQDPTG 401 Query: 423 TFIRHWLPELNNVPTQYIHAPHSWLDKND-LSLNYPLPIVDHKKACHHTLNQYYAAKKQ 480 FIR WLPEL +P +++H P + + + + +YP I DH A + + +++ Sbjct: 402 IFIRIWLPELAQIPDRHLHEPWAADNSAEVIGRHYPERIFDHMAAAKAAREKIWEVRRR 460 >gi|254283012|ref|ZP_04957980.1| DNA photolyase, putative [gamma proteobacterium NOR51-B] gi|219679215|gb|EED35564.1| DNA photolyase, putative [gamma proteobacterium NOR51-B] Length = 483 Score = 314 bits (804), Expect = 2e-83, Method: Composition-based stats. Identities = 115/478 (24%), Positives = 194/478 (40%), Gaps = 23/478 (4%) Query: 12 VWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQKS 71 +W + DLR+ DN AL AA +++ ++ +++ P R R HFI SL + Sbjct: 1 MWFKRDLRLEDNAALSAAI-DANKPLLLLYLVEPRLLRDPHYRRRHWHFIAQSLRDLSSR 59 Query: 72 LSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEIN-EVRRDKLLEKRLQHR 130 LS + + D+ E + ++ + + + RD+ + + Q + Sbjct: 60 LSPHDTLLHVLEA----DAEEVFPRLHRTLGIATIYSHEETGLEVTYARDRWVSEFAQSQ 115 Query: 131 VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTP 190 I D + P + + + + L +LP L ++ Sbjct: 116 DI-----DWLEYPTNGVQRGRRNRKGWSRAWHQQMSAQPDSPRLNALPGRTPALPEALSG 170 Query: 191 SNIPRFFDYPFQAIDPMFP-IGEQNALHILRKFCKEKVYYYVEQRDIPA--IQGTSQLSP 247 R + + P F GE+ A L F + +V Y PA S+LSP Sbjct: 171 RVCRRLAQW--ETTHPQFQRGGERRAHETLNSFLEGRVAGYQRGISKPAASRNSCSRLSP 228 Query: 248 YLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPF 307 Y++ G LS RQ + L++ + + A + + L W + + +P Sbjct: 229 YIAWGNLSIRQVYQALQQAREKGQWRRQLAA--FESRLHWHCHFIQKFEMECRMEF-EPI 285 Query: 308 IPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLV 367 D L++AW +G TG+P+IDAAMR L G+++ R R + SFL L Sbjct: 286 NRGYIPHRTEADPELVRAWCEGRTGYPLIDAAMRCLIATGYINFRSRAMLTSFLCHYLAQ 345 Query: 368 DWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRH 427 DWR G + S LD + + Q G + RI+NP Q DP G FI Sbjct: 346 DWRQGAAWLGSLFLDFEPGIHYA--QMQMQAGVTGINTIRIYNPVKQSMDHDPDGDFIAQ 403 Query: 428 WLPELNNVPTQYIHAPH--SWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQSLL 483 W+PEL +P H P S +++ S +YP P+V + + ++ ++ KK + Sbjct: 404 WVPELAGLPAPLRHQPWEMSAMERMLYSCDYPDPVVSPESSYREARDRLWSLKKDPTI 461 >gi|313675112|ref|YP_004053108.1| deoxyribodipyrimidine photo-lyase family protein (cryptochrome) [Marivirga tractuosa DSM 4126] gi|312941810|gb|ADR21000.1| deoxyribodipyrimidine photo-lyase family protein (cryptochrome) [Marivirga tractuosa DSM 4126] Length = 495 Score = 314 bits (804), Expect = 3e-83, Method: Composition-based stats. Identities = 117/492 (23%), Positives = 199/492 (40%), Gaps = 30/492 (6%) Query: 1 MKATT--AMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQS 58 M + + LVWL+ DLR+ D+ L A N I + P S R Sbjct: 1 MTSPNEIKKPIALVWLKRDLRLEDHAPLQKAS-NIGLPTIIFYAWEPSLLASSDFSNRHW 59 Query: 59 HFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEIN-EV 117 +FI SL+++Q LSQ + + I++L + + + LF + + + Sbjct: 60 NFIAESLIEMQSKLSQ----LEMSLIQVHTEVIDFLKAVQEKFDINYLFSHEETGLKITY 115 Query: 118 RRDKLLEKRLQ-HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRS 176 RD ++ + + + F L + K + F I + D+++ Sbjct: 116 ERDNAVKFFCENQNIEWQEFQQFGLQR---GRKNRQDWSKSWYEFMSKPIIKIDLNDIKT 172 Query: 177 LPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDI 236 + + L G + ++ Y + I G A L F ++ + Y + Sbjct: 173 IHLN--ELPGIILINDSEELNIYKEKGIAQ--TGGTAQAYKYLNSFLSDRHFGYNKNISK 228 Query: 237 PA--IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHL 294 PA + S+LSPYL+ G +S R + + KS ++ + L W + Sbjct: 229 PAEARKSCSRLSPYLAYGNISMRVVFQSM---ISAKEHGNKSALNNFGSRLRWHCHFIQK 285 Query: 295 MAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLR 354 + I N++ L +AW++G TGFP++DA MR + G+++ R+R Sbjct: 286 FEMEDRYEFEN-INRGYDSIRQNENDILYEAWEKGETGFPLVDACMRCVTETGYLNFRMR 344 Query: 355 MITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQ 414 + SFLV L W+ G + Q LD + + +Q A + R++NP Q Sbjct: 345 AMLVSFLVYHLWQPWKRGAMHLGRQFLDFEPGIHYPQFQMQAGVT--GINTIRMYNPVKQ 402 Query: 415 GKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKN------DLSLNYPLPIVDHKKACH 468 K DP G FI+ W+PEL NVP +IH P +L +YP PI+D + A Sbjct: 403 SKEHDPNGDFIKKWVPELQNVPIAFIHEPWKLSYIEQKSIHFELGKDYPSPIIDLEDAGK 462 Query: 469 HTLNQYYAAKKQ 480 + +K Sbjct: 463 KARKVIWEMRKD 474 >gi|148242284|ref|YP_001227441.1| deoxyribodipyrimidine photolyase [Synechococcus sp. RCC307] gi|147850594|emb|CAK28088.1| Deoxyribodipyrimidine photolyase [Synechococcus sp. RCC307] Length = 503 Score = 313 bits (803), Expect = 3e-83, Method: Composition-based stats. Identities = 115/473 (24%), Positives = 195/473 (41%), Gaps = 34/473 (7%) Query: 10 HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69 +VW + DLR D+ AL A + V+ +FI P W Q SARQ F SL +++ Sbjct: 25 QVVWFKRDLRTIDHGALSQASRSG--PVLPLFIVEPMFWAQPDASARQWEFCAESLAELR 82 Query: 70 KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEIN-EVRRDKLLEKRLQ 128 ++L+ G +++ L + Q+ + +L+ +++ + RRD+L+ + + Sbjct: 83 EALAALGQPLVIRTG----EALAVLKALHRQRGIAQLWSHQETGNDFTYRRDRLVARWCR 138 Query: 129 HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188 + I S + A+ + P + L++ V AD L G + Sbjct: 139 EQSIRWHQPRSFGVI------RAMGNRDGWAPAWELLMRQSVCADPAPLTRLGGIDPGGI 192 Query: 189 TPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIP--AIQGTSQLS 246 ++ + P G +L F + Y ++ P A + S+LS Sbjct: 193 PSADDLKL---PSDPCPGRQRGGRSQGAALLESFLHHRGRRYAKELSSPLTAFESCSRLS 249 Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP 306 +L+ G LS R+ + +G +++ L W + + PS+ Sbjct: 250 AHLTFGTLSMREIVQTAR---------LNNGPKAFVERLHWHCHFIQKLESQPSLEYQNA 300 Query: 307 FIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLL 366 + + D L W +G TG+P +DA MR L GW++ R+R + S L Sbjct: 301 HRA-YDGLR-ADDPQRLALWIEGRTGWPFVDACMRALRHHGWINFRMRAMLMSVASYQLW 358 Query: 367 VDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIR 426 + WR E +D + + Q +G + RI+NP QG DP+G FIR Sbjct: 359 LPWRQSGEALARLFVDYEPGIHWNQCQMQ--SGTSGINTVRIYNPIKQGLDHDPEGAFIR 416 Query: 427 HWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479 WLPEL VP IH P + YP P+VD++ A +Q + +K Sbjct: 417 QWLPELQGVPVSGIHTPWLLAQPPE---TYPHPVVDYEAAARQARDQVWGLRK 466 >gi|48478134|ref|YP_023840.1| deoxyribodipyrimidine photolyase [Picrophilus torridus DSM 9790] gi|48430782|gb|AAT43647.1| deoxyribodipyrimidine photolyase [Picrophilus torridus DSM 9790] Length = 431 Score = 313 bits (802), Expect = 4e-83, Method: Composition-based stats. Identities = 141/460 (30%), Positives = 227/460 (49%), Gaps = 47/460 (10%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGI-SARQSHFIYASLLQ 67 ++L R DLR+ DN AL + +N A + FI P Q + + S + +F+ +SL Sbjct: 1 MNLFIFRRDLRLYDNTALLKSLNNETATI---FIMDPAQVKNNEYRSEKALNFMISSLYD 57 Query: 68 VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR- 126 + + D ++ L ++ + +++ NR Y ++RD+ +++ Sbjct: 58 LMTDIEGNHGKLAVFHG----DPVDVLKRLVNRENINEIYINRDYTPFSIKRDERIKEFS 113 Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 +++ + + DD L P + + +K +T F ++ V+ + + L Sbjct: 114 IKNNIKFNALDDYFLSDP-ELRTGSGSFFKNFTAFYNRAMEINVKKPV--YEIKKSNLIP 170 Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246 ++ +Y G + A+ + F K RD P + TS LS Sbjct: 171 IDGDDMELKYNNY-----------GRKTAIEKMHNFIKNDYS----LRDFPELNMTSFLS 215 Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP 306 + G +S R+ ++ +K+ + +L WR+FY ++ +P V G Sbjct: 216 ADIKFGNISIREAYHYIKD-------------PEFRRQLYWRDFYLYIAYHFPYV-FGSN 261 Query: 307 FIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLL 366 F I+W + AWK G TG+PI+DAAMR LN G+++NRLRMI +SFLVKDL Sbjct: 262 FNRKY-NIKWENKEKYIDAWKNGLTGYPIVDAAMRSLNETGYINNRLRMIVSSFLVKDLH 320 Query: 367 VDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIR 426 VDWRIGE+YF +L+D D ASNNG WQW ASTG +S +RI NP IQ K+FDP+ FI+ Sbjct: 321 VDWRIGEKYFAQKLIDYDPASNNGNWQWVASTGVNSRGMYRIINPWIQQKKFDPECKFIK 380 Query: 427 HWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKA 466 ++ EL+++ + IH + NYP P+VDHK A Sbjct: 381 RYVNELSDLEPEIIHNLYKIRLN-----NYPAPLVDHKTA 415 >gi|313676689|ref|YP_004054685.1| cryptochrome, dash family [Marivirga tractuosa DSM 4126] gi|312943387|gb|ADR22577.1| cryptochrome, DASH family [Marivirga tractuosa DSM 4126] Length = 475 Score = 313 bits (801), Expect = 5e-83, Method: Composition-based stats. Identities = 135/483 (27%), Positives = 234/483 (48%), Gaps = 35/483 (7%) Query: 1 MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQS-- 58 MK S L+W R +LR+ DN+AL NS+ ++ ++I +W+++ + ++S Sbjct: 1 MKKKHRKS--LIWFRKNLRLKDNQALLEGVQNSEKYLL-LYIFDEREWKKNPVGLKRSSD 57 Query: 59 ---HFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEIN 115 +F++ S+L +++++ KG + D+ + + ++ + L+ ++ Sbjct: 58 KKLNFLWQSVLDLKQNIEAKGGQLVMLKG----DAEDLIQRLSIENKFDALYAPKESGTE 113 Query: 116 EVRRDKLLEKRL-QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADL 174 E +K +E +HR + + L I ++ ++T FRK +N Q + Sbjct: 114 EFELEKSVEDFFIKHRAKVDFYAQTTLFHEDDIPWPIGKLPDIFTQFRK---ENEKQTGV 170 Query: 175 RSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPM------FPIGEQNALHILRKFCKE--K 226 R L L+ + + F D +I P F GE +A L + + + Sbjct: 171 RDLFESPEDLSASIPVKEVFEFSDLAIGSISPEEKSVLNFQGGETHAWERLEYYFWDSDQ 230 Query: 227 VYYYVEQRD-IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNEL 285 + Y R+ + + +S+ SP+L++G +SP+ + ++K+ + K + + EL Sbjct: 231 LKEYKNTRNGLLGERYSSKFSPWLALGCISPKSIYYQVKQYEKER--KKNQSTYWMIFEL 288 Query: 286 IWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNT 345 IWR+++ ++ + + K I + ++W D L + WK TG P IDA MR+LN Sbjct: 289 IWRDYFHFVLKKFGAQLFQKEGIKG-KGVDWKWDLELFEKWKTAETGVPFIDANMRELNA 347 Query: 346 IGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPY 405 G+M NR R ASFLVKDL +DWR+G YF QL+D D+ASN G W + A GND Sbjct: 348 TGFMSNRGRQNVASFLVKDLGLDWRMGAWYFEHQLIDYDVASNWGNWAYVAGVGNDPREN 407 Query: 406 FRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLN------YPLP 459 R FN Q K++D +G ++RHW+PEL + IH + LN Y P Sbjct: 408 -RYFNILSQAKKYDVKGDYVRHWIPELKEIEGFNIHKVSLMNEVALEKLNLIIPDIYLRP 466 Query: 460 IVD 462 +VD Sbjct: 467 VVD 469 >gi|62001759|gb|AAX58599.1| cryptochrome [Danaus plexippus] Length = 534 Score = 313 bits (801), Expect = 6e-83, Method: Composition-based stats. Identities = 109/485 (22%), Positives = 196/485 (40%), Gaps = 36/485 (7%) Query: 10 HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69 +++W R+ LR+ DN +L++A ++ + +FI E + + ++ +L + Sbjct: 5 NVIWFRHGLRLHDNPSLHSALEDASSPFFPIFIFDGETAGTKMVGYNRMRYLLEALNDLD 64 Query: 70 KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH 129 + + G + + + L + + E RD + + Sbjct: 65 QQFRKYGGKLLMIKGRPDL----IFRRLWEEFGIRTLCFEQDCEPIWRPRDASVRALCRD 120 Query: 130 -RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188 V C+ L P +++ + + ++ + V + Sbjct: 121 IGVSCREHVAHTLWNPDTVIKANGGIPPLTYQMFLHTVEIIGNPPRPVDDVDLNGVNFGS 180 Query: 189 TPSNIPRFFDYPFQAIDP---------------MFPIGEQNALHILRKFCKEKVY----- 228 P + R F +A P + GE AL +++ + Sbjct: 181 LPESFYREFVVFDKAPKPEDLGVFLENEDIRMIRWVGGETAALKQMQERLAVEYETFCRG 240 Query: 229 YYVEQRDIPAIQGTS-QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIW 287 Y+ P + G LSP L G LS R+ + L++ F + + +LIW Sbjct: 241 SYLPTHGNPDLLGPPISLSPALRFGCLSVRRFYWSLQDLFQQVHQGRLASTQFITGQLIW 300 Query: 288 REFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDS-HLLQAWKQGYTGFPIIDAAMRQLNTI 346 RE++ + P+ P I W + LQ WK+G TGFP +DAAMRQL T Sbjct: 301 REYFYTMSVNNPNYA-QMSGNPICLDIPWKEPENDELQRWKEGRTGFPFVDAAMRQLRTE 359 Query: 347 GWMHNRLRMITASFLVKD-LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDS-VP 404 GW+H+ +R ASFL + L + W G ++F+ LLD D + G W W +S+ ++ + Sbjct: 360 GWLHHVVRNTVASFLTRGTLWLSWEHGLQHFLKYLLDADWSVCAGNWMWVSSSAFEALLD 419 Query: 405 YFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND------LSLNYPL 458 P G+R +P G ++R ++PEL +P +YI+ P + + +YP Sbjct: 420 SGECACPVRLGRRLEPTGHYVRRYVPELARMPGEYIYEPWRAPLEVQEAAGCVIGRDYPA 479 Query: 459 PIVDH 463 P+VDH Sbjct: 480 PVVDH 484 >gi|15899214|ref|NP_343819.1| deoxyribodipyrimidine photo-lyase [Sulfolobus solfataricus P2] gi|13815773|gb|AAK42609.1| Deoxyribodipyrimidine photolyase (DNA photolyase) (photoreactivating enzyme). (phrB) [Sulfolobus solfataricus P2] Length = 433 Score = 313 bits (801), Expect = 6e-83, Method: Composition-based stats. Identities = 140/475 (29%), Positives = 217/475 (45%), Gaps = 49/475 (10%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHG--ISARQSHFIYASLLQV 68 L R DLR+ DN L A + + KVI FI P Q S +F+ SL ++ Sbjct: 4 LFIFRRDLRLDDNTGLIKALEDCE-KVIPAFILDPRQVGNENEYKSEFAINFMINSLNEL 62 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128 L ++G + F + E + + V ++ N Y RD+ + K + Sbjct: 63 NDELRKRGSRLYVY----FGLAEEVIKNLLK--DVDAVYLNEDYTPFSKMRDERIRKYCE 116 Query: 129 HRV-ICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187 I KSF+D +L N Y+ +T F + ++ +++ + Sbjct: 117 DTGKIMKSFEDYLLTSKNDFKN-----YRNFTTFYNVVKNKQIKKPVQNNYTNYYK---- 167 Query: 188 VTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSP 247 D G + + ++ + + Y +++D A + LSP Sbjct: 168 ------NSLGDEHELPPRQGERGGRKEGIKLIER---ARQINY-DRKDFVAEDNRTFLSP 217 Query: 248 YLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPF 307 +L G LS R+ + L + + +L WR+FY L+A+Y +P Sbjct: 218 HLKFGTLSIREVYYSLLDSQA------------IIRQLYWRDFYT-LLAYYNERVFHEPL 264 Query: 308 IPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLV 367 IEW + L QAW +G TG+PIIDA MRQLN G M NR+RM+TA FLVK L++ Sbjct: 265 KREYNCIEWENNERLFQAWLEGKTGYPIIDAGMRQLNRTGDMPNRVRMLTAFFLVKVLII 324 Query: 368 DWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRH 427 DWRIGE+YF S+L+D D + NNG WQW AS G D + FR+F+P Q +DP+ +I+ Sbjct: 325 DWRIGEKYFASKLIDYDPSVNNGNWQWIASVGTDYI--FRVFDPWKQQVTYDPEAKYIKR 382 Query: 428 WLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQSL 482 W+ EL + + IH + + K+ YP PIVD + + Y +K + Sbjct: 383 WVDELESYDAEIIHNAYKYTLKS-----YPKPIVDWRIRVNLAKRLYEVCRKSKI 432 >gi|323476401|gb|ADX81639.1| Deoxyribodipyrimidine photo-lyase [Sulfolobus islandicus HVE10/4] Length = 433 Score = 312 bits (800), Expect = 6e-83, Method: Composition-based stats. Identities = 142/475 (29%), Positives = 219/475 (46%), Gaps = 49/475 (10%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHG--ISARQSHFIYASLLQV 68 L R DLR+ DN L A + + KVI FI P Q S +F+ SL ++ Sbjct: 4 LFIFRRDLRLDDNTGLIKALEDCE-KVIPAFILDPRQVGNENEYKSEFAINFMINSLNEL 62 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128 L ++G + F + E + + V ++ N Y RD+ + K + Sbjct: 63 NDELRKRGSRLYVY----FGLAEEVIKNLLK--DVDAVYLNEDYTPFSKMRDERIRKYCE 116 Query: 129 HRV-ICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187 I KSF+D +L N Y+ +T F + ++ +++ + Sbjct: 117 DTGKIMKSFEDYLLTSKNDFKN-----YRNFTTFYNVVKNKQIRKPVQNNYTNYYK---- 167 Query: 188 VTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSP 247 D G + + ++ + + Y +++D A + LSP Sbjct: 168 ------NSLGDEHELPPRQGERGGRKEGIKLIER---ARQINY-DRKDFVAEDNRTFLSP 217 Query: 248 YLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPF 307 +L G LS R+ + L + + +L WR+FY L+A+Y +P Sbjct: 218 HLKFGTLSIREVYYSLLDSQA------------IIRQLYWRDFYT-LLAYYNERVFHEPL 264 Query: 308 IPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLV 367 IEW + LLQAW +G TG+PIIDA MRQLN G M NR+RM+TA FLVK LL+ Sbjct: 265 KREYNCIEWENNERLLQAWVEGKTGYPIIDAGMRQLNRTGDMPNRVRMLTAFFLVKVLLI 324 Query: 368 DWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRH 427 DWRIGE+YF S+L+D D + NNG WQW AS G D + FR+F+P Q +DP+ +++ Sbjct: 325 DWRIGEKYFASKLIDYDPSVNNGNWQWIASVGTDYI--FRVFDPWKQQITYDPEAKYVKR 382 Query: 428 WLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQSL 482 W+ EL + ++ IH + + K NYP PIVD + + Y +K + Sbjct: 383 WVDELESYDSEIIHNAYKYTLK-----NYPKPIVDWRIRVNLAKRFYEVCRKSKI 432 >gi|313620250|gb|EFR91701.1| deoxyribodipyrimidine photo-lyase [Listeria innocua FSL S4-378] Length = 302 Score = 312 bits (800), Expect = 7e-83, Method: Composition-based stats. Identities = 131/282 (46%), Positives = 171/282 (60%), Gaps = 13/282 (4%) Query: 206 PMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKE 265 P F GE+ A L F KE + Y + RD+PA+ TS LS YL G +S R W L++ Sbjct: 24 PAFDSGEKAANTRLANFVKEDLADYDKARDVPALDKTSHLSRYLRTGEISIRTVWQALQK 83 Query: 266 EFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQA 325 E + G ++ EL WR+FY + +P +P IEW + + Sbjct: 84 E------EATEGRATFEKELCWRDFYNMIYVSFPKQ-KNEPIQENYRFIEWENNREFFKK 136 Query: 326 WKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDL 385 W+ G TGFP++DAAMRQL GWMHNRLRMITASFL KDLL+DWR GE+YF L+D D Sbjct: 137 WQDGQTGFPLVDAAMRQLKETGWMHNRLRMITASFLTKDLLIDWRFGEKYFQQMLIDYDP 196 Query: 386 ASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHS 445 ASN GGWQWAASTG D+VPYFRIFNPT Q ++FDP GTFIR ++ EL ++P ++IH P Sbjct: 197 ASNIGGWQWAASTGTDAVPYFRIFNPTTQSEKFDPDGTFIRKYVKELRDLPDKFIHQPEK 256 Query: 446 WLDKND------LSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481 + L +YPLPI+DHK+ + +Y +K+ S Sbjct: 257 MSETEQKEHGLILGKDYPLPIIDHKERRKLAIARYEFSKEHS 298 >gi|291296619|ref|YP_003508017.1| Deoxyribodipyrimidine photo-lyase [Meiothermus ruber DSM 1279] gi|290471578|gb|ADD28997.1| Deoxyribodipyrimidine photo-lyase [Meiothermus ruber DSM 1279] Length = 433 Score = 312 bits (800), Expect = 8e-83, Method: Composition-based stats. Identities = 132/424 (31%), Positives = 203/424 (47%), Gaps = 24/424 (5%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 ++LVW R DLR+ DN AL A + + + P + + R+ + Y + + Sbjct: 1 MNLVWHRADLRLHDNPALAEALRTG--PAVGLVVLDPNILQ--NTTPRRRAWFYQNTQAL 56 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128 +++ + +G + + E L + V ++F R RD+ + + L Sbjct: 57 REAYAARGGLLLVRSGLPW----EVLPRVAAELGVQRVFAVRNSTPYARFRDQKVGEALP 112 Query: 129 HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188 R + + PG+I+ Y V+TP+ K + + A P Sbjct: 113 GR--LRWLPGQYIHEPGTIVKPDGGGYTVFTPYSKRWWAA-----PEPVLLEAPAHFPPF 165 Query: 189 TPSNIPRFFDYPFQAID-PMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSP 247 + P +A D P+ P GE AL L F ++K+ +Y + RD A +G S+LS Sbjct: 166 SLPPDYDPGAIPQEASDVPLPPAGEAAALKALEVFLRDKLPHYHQTRDGLAGEGVSRLSY 225 Query: 248 YLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPF 307 Y ++GVLSPR + + GA W+NEL WR+F L+ P + + F Sbjct: 226 YFTLGVLSPRLAARKALQV-------GGEGARKWVNELCWRDFSGDLLYHRPQMMT-QAF 277 Query: 308 IPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLV 367 P E + WN DS + +AW G TG P++DA MR+L G++ NR RM+ A F VK L+ Sbjct: 278 DPRWEGLPWNHDSEVFEAWLHGQTGIPVVDACMRELQATGFLSNRGRMVVAQFAVKLALL 337 Query: 368 DWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRH 427 W+ E F + LLDGD ASN GW WA G D+ PYFR+FN Q + DPQG +++ Sbjct: 338 PWQKCERAFRNLLLDGDNASNLQGWHWAGGLGVDAAPYFRVFNLITQAETHDPQGLWLKR 397 Query: 428 WLPE 431 W+PE Sbjct: 398 WVPE 401 >gi|145881071|gb|ABP97099.1| cryptochrome CRY2 [Acropora millepora] Length = 520 Score = 312 bits (799), Expect = 8e-83, Method: Composition-based stats. Identities = 127/496 (25%), Positives = 207/496 (41%), Gaps = 38/496 (7%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 L W R DLR+ DN +L NS V+ P + +Q +S + F+ SL + Sbjct: 19 TSLHWFRKDLRLHDNPSLRECLRNSKVF-YGVYFLPPSEAKQGSVSLNRWGFLLESLRDL 77 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128 SL + G + + +E L + + + ++ + E RD ++ + Sbjct: 78 DTSLVECGSRLFVIRG----NPVEMLPNLFKKWNINQMSFEVDSEPYSNSRDLVISHLAK 133 Query: 129 HRVI-CKSFDDSVLLPPGSILN-HALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 I S L P + + + ++ F+++++Q + + +P +L G Sbjct: 134 ENGIEVISRVSHTLYDPRILRGLSSGIVPLLFDEFKESVLQK--RQPEKPVPKVGRKLFG 191 Query: 187 PVTPS---------NIPRFFDYPFQAIDP------MFPIGEQNALHILRKFCKEKVYYYV 231 +PR + + ++ GE AL + + V Sbjct: 192 ACVTPVGSDHQQCYGVPRLDEIGGKFSKSGSVCSELYKGGESEALKRMETALQWMVKNDF 251 Query: 232 EQRDIP---AIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWR 288 + +I + + LSPYL G LSPR R+ EE++ K S +L+WR Sbjct: 252 TEPEITIHSLLXSATHLSPYLRCGCLSPRLLHQRITEEYIK--SKGVSPPSELFVKLLWR 309 Query: 289 EFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGW 348 EF+ + P P + +I W L+ WK+G TGFP IDA MRQL T GW Sbjct: 310 EFFFVVGGQIPD-AHEMINNPISLEIPWEDSVEYLERWKKGTTGFPWIDAIMRQLRTEGW 368 Query: 349 MHNRLRMITASFLVKD-LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFR 407 +HN R ASFL + L V+W G + F LD + + N G W W +++ P Sbjct: 369 IHNIARRAVASFLTRGCLWVNWEEGFKVFDEFQLDAERSLNVGNWLWVSTSTFVKGPVP- 427 Query: 408 IFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPH------SWLDKNDLSLNYPLPIV 461 F P GK+ DP G ++R ++PE+ N+PT+YI P + +YP PIV Sbjct: 428 WFCPVGVGKKIDPTGEYVRKYVPEIRNLPTEYIFEPWLTPRDLQRSYGCVIGRDYPAPIV 487 Query: 462 DHKKACHHTLNQYYAA 477 +H K + + Sbjct: 488 NHVKQRAICVQRMQEL 503 >gi|114798846|ref|YP_761758.1| deoxyribodipyrimidine photolyase family protein [Hyphomonas neptunium ATCC 15444] gi|114739020|gb|ABI77145.1| deoxyribodipyrimidine photolyase family protein [Hyphomonas neptunium ATCC 15444] Length = 536 Score = 312 bits (799), Expect = 1e-82, Method: Composition-based stats. Identities = 114/492 (23%), Positives = 203/492 (41%), Gaps = 33/492 (6%) Query: 5 TAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYAS 64 + VH++W + DLR+ D+ A AA S A ++ ++I P W S RQ F+ S Sbjct: 6 SMSGVHVIWFKRDLRVHDHAA-LAAAVASGAPILPLYIFEPGYWALPEHSRRQFDFVRDS 64 Query: 65 LLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEV-RRDKLL 123 L ++ +L +G S +I+ + + + + + + + RD+ + Sbjct: 65 LEELDAALKARGTKLVIRMGS----AIDVFSALHQKHGIAAIHAHEETGLQWTFDRDRAV 120 Query: 124 EKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIR 183 + ++ I S+ P + + ALQ + +A ++ +L A Sbjct: 121 RRWARNAGI------SLREQPQNGVQRALQSRDGWANQWEAFMRRPRLVAPEALKPSAAD 174 Query: 184 LTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIP--AIQG 241 P + F G A+ LR F + + Y + P A Sbjct: 175 SEEWPLPQD----FGLGADDCPQRQKGGRMAAVDCLRSFLESRGRTYQKSMSSPLTAADA 230 Query: 242 TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSG----AFSWLNELIWREFYRHLMAF 297 S+LSP+L+ G +S R+ W ++ + +G S+++ L W + + Sbjct: 231 CSRLSPHLAFGTVSIREAWQAAQKAQHEHGRSGDTGFAASIGSFISRLQWHCHFIQKLED 290 Query: 298 YPSVCMGKPFIPWTEKIEWNK--DSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRM 355 S+ + P + + L AW +G TGFP +DA MR L GW++ R+R Sbjct: 291 QTSI-ESRNLHPGYDGLRPEPLAGDPRLAAWIEGRTGFPFLDACMRSLRETGWLNFRMRA 349 Query: 356 ITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQG 415 + F L +DW+ E+ + D + + Q + + RI+NP Q Sbjct: 350 MVMGFASHHLWLDWKQPAEHLAALFTDFEPGIHYPQAQMQ--SATTGMNTPRIYNPVKQS 407 Query: 416 KRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND------LSLNYPLPIVDHKKACHH 469 + DP G FIR W+PEL+ +P +++HAP L YP+ IVDH A Sbjct: 408 QDQDPDGAFIRRWVPELSGLPAEWLHAPWEAPASVRARAGIVLGQTYPMRIVDHMAAAEE 467 Query: 470 TLNQYYAAKKQS 481 ++ +A +K++ Sbjct: 468 ARSRIFAVRKRA 479 >gi|322502106|emb|CBZ37189.1| unnamed protein product [Leishmania donovani BPK282A1] Length = 541 Score = 312 bits (799), Expect = 1e-82, Method: Composition-based stats. Identities = 145/530 (27%), Positives = 215/530 (40%), Gaps = 74/530 (13%) Query: 4 TTAMSVHLVWLRNDLRITDNKALYAACHNSDA---KVIAVFIATPEQW---RQHGISARQ 57 T V L R DLR+ DN L A C + V+ F P Q R Sbjct: 22 TVREEVALFLFRRDLRVVDNTGLQALCDEAARRSIPVLPAFFFNPIQCDKKRNPYFGDAF 81 Query: 58 SHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEV 117 F SL+ + + +Q + S+ D DS V L +N Y + Sbjct: 82 FQFFCESLIDLDGA-AQLNGGLVCLRGSDEDCLQRIRDS---GYEVKVLGFNEDYTPFAL 137 Query: 118 RRDKLLEKRLQHRVIC--KSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLR 175 RD+LL + I D L P ++ ++ Q Y V+TPF Sbjct: 138 ARDRLLRAYADKQGIVCVTGPHDYSLRPLDEVVKNSEQPYSVFTPFYNKFTAEHAHRVAV 197 Query: 176 SLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMF----------PIGEQNALHILRKFCKE 225 L V ++ + R + +DP G L L C E Sbjct: 198 PLLVNVSKVQSMLVSQPKKRMEHH---LVDPALVYAHMPQVQDHGGRTEGLKRLA--CVE 252 Query: 226 KVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNEL 285 ++ Y + RD A TS LSP++ G +S R+ W+ ++ + +L Sbjct: 253 RLKQYADARDDIAGDRTSHLSPHMKCGTVSTREVWHA--------SVRALGTGHPFTRQL 304 Query: 286 IWREFYRHLMAFYPSVCMGK--------------------PFIPWTEKIEWNKDSHLLQA 325 +WREFY L P + G+ PF P + +W+ + +A Sbjct: 305 VWREFYAMLAFTRPRLLQGQLNSFIGQQDIVKATQPKQNAPFQPSYDNFKWSWKAEHFEA 364 Query: 326 WKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDL 385 +K+G TG P++DAA+R L GW HNR R++ ++F VK L +DWR E +F + +D D Sbjct: 365 FKEGRTGVPLVDAAVRCLTATGWCHNRCRLVISNFAVKVLGIDWRECERWFATVAVDYDA 424 Query: 386 ASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHS 445 A+NNGGW W++ G D+ PYFR FN Q +RFDP FI W+PEL VP +H Sbjct: 425 ANNNGGWLWSSGQGADAQPYFRTFNAFRQSERFDPDCKFIFQWVPELAKVPPSVVHHWEG 484 Query: 446 WLDKN-------------------DLSLNYPLPIVDHKKACHHTLNQYYA 476 + + + S +YP PIVD K A + ++ Sbjct: 485 YCARARGKATVTHSRKRNGQGNAEEYSTSYPAPIVDIKAATKAVVEEFKK 534 >gi|157874739|ref|XP_001685786.1| DNA repair enzyme; Deoxyribodipyrimidine photolyase [Leishmania major strain Friedlin] gi|68128859|emb|CAJ06003.1| putative deoxyribodipyrimidine photolyase [Leishmania major strain Friedlin] Length = 541 Score = 311 bits (798), Expect = 1e-82, Method: Composition-based stats. Identities = 144/530 (27%), Positives = 214/530 (40%), Gaps = 74/530 (13%) Query: 4 TTAMSVHLVWLRNDLRITDNKALYAACHNS---DAKVIAVFIATPEQW---RQHGISARQ 57 T V L R DLR+ DN L A C + V+ F P Q R Sbjct: 22 TEREEVALFLFRRDLRVVDNTGLQALCDEAVRRSIPVLPAFFFNPIQCDKKRNAYFGDAF 81 Query: 58 SHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEV 117 F SL+ + + +Q + S+ D DS V L +N Y + Sbjct: 82 FQFFCESLVDLDGA-AQLNGGLVCLRGSDEDCLRRIRDS---GYEVKVLGFNEDYTPFAL 137 Query: 118 RRDKLLEKRLQHRVIC--KSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLR 175 RD+LL + I D L P ++ + Q Y V+TPF + Sbjct: 138 ARDRLLRDYADKQGIVCVTGPHDYSLRPLDEVVKDSEQPYSVFTPFYNKFTAEHARKVAV 197 Query: 176 SLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMF----------PIGEQNALHILRKFCKE 225 L V ++ + + +DP G + L C E Sbjct: 198 PLMVNVSKVQAMLVSQPKKCLEHH---LVDPALVYTHMPQVQDHGGRTEGMKRLA--CVE 252 Query: 226 KVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNEL 285 ++ Y + RD A TS LSP++ G +S R+ W+ + ++ +L Sbjct: 253 RLKQYADVRDDIAGDRTSHLSPHMKCGTVSTREVWHASVQAL--------GTGHAFTRQL 304 Query: 286 IWREFYRHLMAFYPSVCMGK--------------------PFIPWTEKIEWNKDSHLLQA 325 +WREFY L P + G+ PF P + +W+ + +A Sbjct: 305 VWREFYAMLAFTRPRLLQGQLNSFIGQQDIVKATQPKQNAPFQPLYDNYKWSWKAEHFEA 364 Query: 326 WKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDL 385 +K+G TG P++DAA+R L GW HNR R++ ++F VK L +DWR E +F + +D D+ Sbjct: 365 FKEGRTGVPLVDAAVRCLTATGWCHNRCRLVISNFAVKVLGIDWRECERWFATVAVDYDV 424 Query: 386 ASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHS 445 ASNNGGW W++ G D+ PYFR FN Q +RFDP FI W+PEL VP +H Sbjct: 425 ASNNGGWLWSSGQGADAQPYFRTFNAFRQSERFDPDCKFIFQWVPELAKVPPSVVHHWEE 484 Query: 446 WLDKN-------------------DLSLNYPLPIVDHKKACHHTLNQYYA 476 + K + +YP PIVD K A + ++ Sbjct: 485 YCAKARGRATATHSRKRSGQVKAKEYPTSYPAPIVDIKAATKAIIEEFKK 534 >gi|311894408|dbj|BAJ26816.1| putative deoxyribodipyrimidine photo-lyase [Kitasatospora setae KM-6054] Length = 441 Score = 311 bits (798), Expect = 1e-82, Method: Composition-based stats. Identities = 144/456 (31%), Positives = 218/456 (47%), Gaps = 31/456 (6%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M++ +V DLR+ DN AL+AA +D +V+ +F+ P + + F+ L Sbjct: 1 MTLAIVLFTQDLRLHDNPALHAAHTRAD-QVVPLFVTDPAVAAAGFAAPNRVAFLSGCLA 59 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 ++ +L + G + D+ E + T + RR++ L + Sbjct: 60 ELDAALRRTGSRLTVREG----DTAEQTAKLAAETGATAVHVAAGVSTYARRREQRLRRA 115 Query: 127 LQHRVICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185 L R D S+ +PPG++ Y V+TP+ +A Q +A L + Sbjct: 116 LGER--LHVHDGSLTAVPPGAVRPIGRDHYAVFTPYLRAWQQTPRRAPLPAPRALRTPDD 173 Query: 186 GPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245 P P + GE A + + + Y + D A TS L Sbjct: 174 LPSAPLPTAT------PTARRLPDPGEAAARRTWQHWHAD---DYADLHDALADDATSHL 224 Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305 SPYL G LS + + ++ + +GA ++ +L+WR+F+ ++A P+ Sbjct: 225 SPYLHFGCLSANELAHLAEQ-------RGGTGAEAFARQLVWRDFHHQVLAARPAAA-HS 276 Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365 + P + W+ D AW+ G TGFP+IDAAMRQL GWMHNR R++TASFL K L Sbjct: 277 DYRP--RPVPWHNDPDEFAAWRDGRTGFPVIDAAMRQLAETGWMHNRARLLTASFLSKSL 334 Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425 DWR G +F+ L+DGDLA+N WQW A TG D+ P R+ NP +Q R DP+GT++ Sbjct: 335 HHDWRPGAAHFLHHLVDGDLANNQLNWQWTAGTGTDTRP-NRVLNPLVQADRHDPEGTYV 393 Query: 426 RHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIV 461 R WLPEL ++PTQ IH P L +YP PI+ Sbjct: 394 RRWLPELAHLPTQDIHRPWQSLL---CPADYPDPII 426 >gi|33866289|ref|NP_897848.1| putative deoxyribodipyrimidine photolyase [Synechococcus sp. WH 8102] gi|33639264|emb|CAE08272.1| putative deoxyribodipyrimidine photolyase [Synechococcus sp. WH 8102] Length = 491 Score = 311 bits (798), Expect = 1e-82, Method: Composition-based stats. Identities = 120/479 (25%), Positives = 191/479 (39%), Gaps = 39/479 (8%) Query: 8 SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67 S+ +VW + DLR+ D++ L A V+ +++ PE W+Q S RQ F SLL+ Sbjct: 3 SLQIVWFKRDLRVDDHRPLLEAAARG--PVLPLYVVEPELWQQPDASERQWLFCRESLLE 60 Query: 68 VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYE-INEVRRDKLLEKR 126 ++++L++ G D ++ L+ Q V L+ + + +RDK + Sbjct: 61 LRQALAELGQPLVVRSG----DVVQVLERARRQFGVDGLWSHEETGNGWTYQRDKRVGAW 116 Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLP--VPAIRL 184 + I G I + + + + P VPA+ Sbjct: 117 ARAHGI----------QWGEIRQFGVTRRMRSRNGWAKRWEEQMAEPITPAPAGVPALEE 166 Query: 185 TGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIP--AIQGT 242 P P P G L LR F + + Y P A G Sbjct: 167 IDPGVIPERPCPELLP-DDCSQRQTGGRSIGLGELRDFLQHRAPCYQRAMSSPKSAFTGC 225 Query: 243 SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVC 302 S+LS YL+ G LS R+ + G S+ + L W + + P + Sbjct: 226 SRLSAYLAWGCLSMREVLQTSRHH-------SGRGVSSFESRLHWHCHFIQKLEDQPEIE 278 Query: 303 MGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLV 362 F P+ I ++ L AW +G TG P +DA MR L GW++ R+R + SF Sbjct: 279 FS-DFHPYMRGIR-ETNAERLAAWTEGRTGVPFVDACMRALKAHGWINFRMRAMLMSFAS 336 Query: 363 KDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQG 422 +L + WR + Q +D + + Q +G+ S+ RI+NP QG DPQG Sbjct: 337 YNLWLPWRDSGLHLARQFVDYEPGIHWSQCQMQ--SGSTSINTIRIYNPIKQGMDHDPQG 394 Query: 423 TFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481 FIR W PEL +V T +IH P L PIVD + ++ + ++ + Sbjct: 395 VFIRQWCPELKDVSTIHIHEPWM------LGGGRSAPIVDVTTSMQLAKDRIWEIRRSA 447 >gi|2126786|pir||I39818 deoxyribodipyrimidine photo-lyase (EC 4.1.99.3) - Bacillus firmus (fragment) gi|142783|gb|AAA22361.1| DNA photolyase [Bacillus firmus] Length = 339 Score = 311 bits (798), Expect = 1e-82, Method: Composition-based stats. Identities = 142/340 (41%), Positives = 190/340 (55%), Gaps = 15/340 (4%) Query: 145 GSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL--TGPVTPSNIPRFFDYPFQ 202 +L YKV+TP+ KA + + + G F+ + Sbjct: 1 DQVLKKDGTPYKVFTPYYKAWAKERKRTPAVIKRDVLLGSVHKGTAPDREAETLFNNLIK 60 Query: 203 AIDPMF-PIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWN 261 + IGE++A+ L+ F K+++ Y RD P+I GTS+LSPY+ G +S R + Sbjct: 61 KCSYDWSAIGEEHAIKRLQMFTKKRLSGYKANRDFPSITGTSRLSPYIKTGAVSSRSIYY 120 Query: 262 RLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSH 321 + D A ++L EL WR+FYR + + P C + + ++ W+ D Sbjct: 121 HILNAEADSY-----SAETFLKELAWRDFYRMVHFYEPD-CKDREIMEGYRELNWSHDQD 174 Query: 322 LLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLL 381 L +WK+G TGFPI+DA MRQL GWMHNRLRMITASFL KDLL+DWR+GE YF L+ Sbjct: 175 DLTSWKRGETGFPIVDAGMRQLLNEGWMHNRLRMITASFLTKDLLIDWRLGERYFERMLI 234 Query: 382 DGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIH 441 D D +SN GGWQWAAS G D+VPYFRIFNP Q KRFD GT+IR ++PELN+VP YIH Sbjct: 235 DYDPSSNIGGWQWAASVGTDAVPYFRIFNPVTQSKRFDENGTYIRTYIPELNHVPDHYIH 294 Query: 442 APHSWLD------KNDLSLNYPLPIVDHKKACHHTLNQYY 475 P + K L +YPLPIVDH K L+ + Sbjct: 295 EPWKMSEEEQVKYKCRLDEDYPLPIVDHSKQRKKALSFFK 334 >gi|322510954|gb|ADX06267.1| putative deoxyribodipyrimidine photo-lyase [Organic Lake phycodnavirus 2] Length = 439 Score = 311 bits (798), Expect = 1e-82, Method: Composition-based stats. Identities = 147/473 (31%), Positives = 224/473 (47%), Gaps = 40/473 (8%) Query: 10 HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQ-HGISARQSHFIYASLLQV 68 + D R DN L A + D +I +FI TPEQ ++ +S F+ SL ++ Sbjct: 3 TIFIFHRDYRSFDNLGLNYAMKHFD-HIIPIFIFTPEQIKKNKYLSNNSLQFLCESLEEL 61 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL- 127 + I + D+++ L ++ + +N+ Y + RD+ ++ Sbjct: 62 RDH-----IPLHI----FYGDNLKVLSKINKTIPISNIVFNKDYTPYAIERDQSIDSWCV 112 Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187 + + C +D +L P G Y VYTPF+ ++++ + I Sbjct: 113 KKNINCVQIEDYLLSPIGRFNKTDGSPYVVYTPFKNNVLKHSIPNTQNHPLKHLIYHKPL 172 Query: 188 VTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSP 247 S DY G +N L L Y +Q I T+QLS Sbjct: 173 EHISYYSPNLDYYTYNPHNNVKGGRKNGLKYLHTNI-----DYEDQLSI----KTTQLSA 223 Query: 248 YLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK-P 306 Y+ G LS R+ ++ K+E + +LIWREFY ++ +YP++ Sbjct: 224 YIKYGCLSIREVYHHFKDENLKA-------------QLIWREFYYYINYYYPNLLKKSVA 270 Query: 307 FIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLL 366 F +KI+W + L+ WK+G TGFP++DA MRQLN G+MHNR R+I ++FL + L Sbjct: 271 FQMKYDKIKWVNNKKHLEWWKRGETGFPVVDACMRQLNKTGYMHNRGRLIVSNFLNRLLG 330 Query: 367 VDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYF-RIFNPTIQGKRFDPQGTFI 425 +DWR+GE YF QL+D D NNG WQW +S G D+ PY R+FNP +Q KRFDP +I Sbjct: 331 LDWRLGELYFAQQLIDYDPCVNNGNWQWVSSVGIDTKPYSQRVFNPWLQSKRFDPHCIYI 390 Query: 426 RHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478 + W+PELN+VP IH D + Y LPI+D+ A +L Y + Sbjct: 391 KEWIPELNDVPPNEIHQWDLHGDPDI----YILPIIDYTMARERSLQMYRTIQ 439 >gi|296081780|emb|CBI20785.3| unnamed protein product [Vitis vinifera] Length = 586 Score = 311 bits (797), Expect = 1e-82, Method: Composition-based stats. Identities = 130/492 (26%), Positives = 214/492 (43%), Gaps = 50/492 (10%) Query: 4 TTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGI------SARQ 57 V +VW RNDLR+ DN+AL A +S A V+ V+ P + A + Sbjct: 84 RNGSGVAIVWFRNDLRVLDNEALVKAWASSQA-VLPVYCVDPRLFGTTHYFGFPKTGALR 142 Query: 58 SHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEV 117 + F+ L ++++L +G+ E L S ++ +++ E+ Sbjct: 143 AQFLIECLADLKRNLMNRGLNLLIQHGKPE----EILPSLAKTFEAHTVYAHKETCSEEL 198 Query: 118 RRDKLLEKRLQHRVI-----------------CKSFDDSVLLPPGSILNHALQMYKVYTP 160 ++L+ L+ V+ + S + + + VYT Sbjct: 199 NVERLVRNGLRQVVLPPSPGQSTSLSSSNHPKLQLIWGSTMYHIEDLPFSTSSLPDVYTQ 258 Query: 161 FRKAL-----IQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNA 215 FRK++ I+ ++ P P I G V + + F GE A Sbjct: 259 FRKSVESKCTIRICIRTPTLLGPPPNIEDWGSVPSIDQLGLHEEKVSR-GMRFIGGEAAA 317 Query: 216 LHILRKFCKEKV--YYYVEQRD-IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLI 272 L + ++ +K Y R+ + +++ SP+L+ G LSPR + +K + Sbjct: 318 LSRVNEYFWKKDLLKVYKATRNGMLGADYSTKFSPWLASGSLSPRFIYQEVKRYEKER-- 375 Query: 273 KPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTG 332 + + L ELIWR+++R L Y + E W++D + +AW+ G TG Sbjct: 376 QANDSTYWVLFELIWRDYFRFLSVKYRNSLFHLGGPRKVEA-RWSQDQTMFEAWRDGCTG 434 Query: 333 FPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGW 392 +P+IDA M++L+ G+M NR R I SFLV+D+ +DWR+G E+F + LLD D SN G W Sbjct: 435 YPLIDANMKELSATGFMSNRGRQIVCSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNW 494 Query: 393 QWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDL 452 + A GND R F+ Q K +DP+G ++ WLPEL +P + P Sbjct: 495 TYGAGVGNDPRE-DRYFSIPKQAKTYDPEGEYVAFWLPELQALPNDKRNFP--------- 544 Query: 453 SLNYPLPIVDHK 464 +Y IV K Sbjct: 545 GKSYINQIVPLK 556 >gi|322494540|emb|CBZ29842.1| putative DNA repair enzyme [Leishmania mexicana MHOM/GT/2001/U1103] Length = 541 Score = 311 bits (797), Expect = 2e-82, Method: Composition-based stats. Identities = 140/525 (26%), Positives = 216/525 (41%), Gaps = 74/525 (14%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDA---KVIAVFIATPEQW---RQHGISARQSHFIY 62 V L R DLR+ DN L A C+ + V+ F P Q R F Sbjct: 27 VALFLFRRDLRVVDNTGLQALCNEAARRSIPVLPAFFFNPIQCDKKRNPYFGDAFFQFFC 86 Query: 63 ASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKL 122 SL+ + + +Q + S+ +D + + + +V L +N Y + RD+L Sbjct: 87 ESLVDLDGA-TQLNGGLVCLRGSD-EDCLRRIRDGGYEVKV--LGFNEDYTPFALVRDRL 142 Query: 123 LEKRLQHRVIC--KSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVP 180 L + I D L P ++ + Q Y V+TPF + + L V Sbjct: 143 LRDYADKQGIVCVTGPHDYSLRPLDEVVKDSEQPYSVFTPFYNKFTAEHARKVAKPLLVN 202 Query: 181 AIRLTGPVTPSNIPRFFDYPFQAIDPMF----------PIGEQNALHILRKFCKEKVYYY 230 ++ + + +DP G L L C E++ Y Sbjct: 203 VRKVQSMLVSQPKKCLEHH---LVDPALLYTHMPQVQDHGGRTEGLKRLA--CVERLKQY 257 Query: 231 VEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREF 290 + RD A TS LSP++ G +S R+ W+ + + +L+WREF Sbjct: 258 ADVRDDIAGDCTSHLSPHMKCGTVSTREVWHASVQAL--------GTGHPFTRQLVWREF 309 Query: 291 YRHLMAFYPSVCMGK--------------------PFIPWTEKIEWNKDSHLLQAWKQGY 330 Y L P + G+ PF P + +W + +A+K+G Sbjct: 310 YAMLAFTRPRLLQGQLNSFIGQKDIVKATQPKQNAPFQPSYDDYKWRWKAEHFEAFKEGR 369 Query: 331 TGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNG 390 TG P++DAA+R L GW HNR R++ ++F VK L +DWR E +F + +D D+A+NNG Sbjct: 370 TGVPLVDAAVRCLTATGWCHNRCRLVISNFAVKVLGIDWRECERWFATVAVDYDVANNNG 429 Query: 391 GWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKN 450 GW W++ G D+ PYFR FN Q +RFDP F+ W+PEL VP +H + + Sbjct: 430 GWLWSSGQGADAQPYFRTFNAFRQSERFDPDCKFVFQWVPELAKVPPSVVHHWEEYCARA 489 Query: 451 -------------------DLSLNYPLPIVDHKKACHHTLNQYYA 476 + +YP PIVD K A + +Y Sbjct: 490 RDKATGTYSRKRGAQGKAEEYPTSYPAPIVDIKAATKAVIEEYKK 534 >gi|87303611|ref|ZP_01086390.1| Deoxyribodipyrimidine photolyase [Synechococcus sp. WH 5701] gi|87281835|gb|EAQ73799.1| Deoxyribodipyrimidine photolyase [Synechococcus sp. WH 5701] Length = 508 Score = 311 bits (797), Expect = 2e-82, Method: Composition-based stats. Identities = 115/484 (23%), Positives = 193/484 (39%), Gaps = 40/484 (8%) Query: 8 SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67 V +VW + DLR+ D++ L A V+ + + PE WRQ SARQ F SL Sbjct: 3 PVQVVWFKRDLRVADHQPLLQASFLG--PVLPLMVVEPELWRQSDASARQWDFCAESLED 60 Query: 68 VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYE-INEVRRDKLLEKR 126 ++++L+ G E L+ + + L+ +++ RD+ + + Sbjct: 61 LRRALAGLGQPLVVR----IGTVEEVLERARCRFGIAGLWSHQETGNGWTYARDRRVARW 116 Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 + I +P ++ + + + +V P A++ Sbjct: 117 AKSHSIPWIE-----IPSFGVIRRLGSRNGWARRWEARMAEPMVP------PPEALQPLA 165 Query: 187 PVTPSNIPRFFDYPF--QAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIP--AIQGT 242 + P IP + G Q +L F + Y + P A + Sbjct: 166 GLDPGAIPSASELGLAPDPCPGRQVGGRQQGQAVLESFLNGRGARYHRELSSPRTAFESC 225 Query: 243 SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVC 302 S+LSP+L+ G LS R+ V L + + + L W + + P + Sbjct: 226 SRLSPHLAWGTLSMREV--------VQLSRRRGAAPVGFEARLHWHCHFIQKLESQPDLE 277 Query: 303 MGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLV 362 + P T + + D L AW +G TG P +DA MR L GW++ R+R + S Sbjct: 278 F-RELHPLTAGLR-SSDPERLAAWAEGRTGLPFVDACMRALIATGWINFRMRAMLMSVAS 335 Query: 363 KDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQG 422 L + WR + +D + + Q +G + RI+NP QG+ DP G Sbjct: 336 YHLWLPWRESGLHLARLFVDYEPGIHWSQCQMQ--SGTTGINTIRIYNPIKQGQDHDPGG 393 Query: 423 TFIRHWLPELNNVPTQYIHAPHSWL------DKNDLSLNYPLPIVDHKKACHHTLNQYYA 476 FIR WLPEL VP ++H P + L L+YPLPIV+ +A + +A Sbjct: 394 DFIRQWLPELAAVPAVHLHEPWTMAVITQQRVGCVLGLHYPLPIVEPNQAAREARVRIWA 453 Query: 477 AKKQ 480 +++ Sbjct: 454 QRQE 457 >gi|227829309|ref|YP_002831088.1| Deoxyribodipyrimidine photo-lyase [Sulfolobus islandicus L.S.2.15] gi|284996667|ref|YP_003418434.1| Deoxyribodipyrimidine photo-lyase [Sulfolobus islandicus L.D.8.5] gi|227455756|gb|ACP34443.1| Deoxyribodipyrimidine photo-lyase [Sulfolobus islandicus L.S.2.15] gi|284444562|gb|ADB86064.1| Deoxyribodipyrimidine photo-lyase [Sulfolobus islandicus L.D.8.5] Length = 433 Score = 311 bits (797), Expect = 2e-82, Method: Composition-based stats. Identities = 140/475 (29%), Positives = 216/475 (45%), Gaps = 49/475 (10%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHG--ISARQSHFIYASLLQV 68 L R DLR+ DN L A + + KVI FI P Q S +F+ SL ++ Sbjct: 4 LFIFRRDLRLDDNTGLIKALEDCE-KVIPAFILDPRQVGNENEYKSEFAINFMINSLNEL 62 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128 L ++G + F + E + + V ++ N Y RD+ + K Sbjct: 63 NDELRKRGSRLYVY----FGLAEEVIKNLLK--DVDAVYLNEDYTPFSKMRDERIRKYCA 116 Query: 129 HRV-ICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187 I KSF+D +L N Y+ +T F + ++ +++ + Sbjct: 117 DTGKIMKSFEDYLLTSKNDFKN-----YRNFTTFYNVVKNKQIRKPVQNNYTNYYK---- 167 Query: 188 VTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSP 247 D G + + ++ + + Y +++D A + LSP Sbjct: 168 ------NSLGDEHELPPRQGERGGRKEGIKLIER---ARQINY-DRKDFVAEDNRTFLSP 217 Query: 248 YLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPF 307 +L G LS R+ + L + + +L WR+FY L+A+Y +P Sbjct: 218 HLKFGTLSIREVYYSLLDSQA------------IIRQLYWRDFYT-LLAYYNERVFHEPL 264 Query: 308 IPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLV 367 IEW + L QAW +G TG+PIIDA MRQLN G M NR+RM+TA FLVK L++ Sbjct: 265 KREYNCIEWENNERLFQAWLEGKTGYPIIDAGMRQLNRTGDMPNRVRMLTAFFLVKVLII 324 Query: 368 DWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRH 427 DWRIGE+YF S+L+D D + NNG WQW AS G D + FR+F+P Q +DP+ +I+ Sbjct: 325 DWRIGEKYFASKLIDYDPSVNNGNWQWIASVGTDYI--FRVFDPWKQQVTYDPEAKYIKR 382 Query: 428 WLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQSL 482 W+ EL + + IH + + K+ YP PIVD + + Y +K + Sbjct: 383 WVDELESYDAEIIHNAYKYTLKS-----YPKPIVDWRIRVNLAKRLYEVCRKSKI 432 >gi|229578080|ref|YP_002836478.1| Deoxyribodipyrimidine photo-lyase [Sulfolobus islandicus Y.G.57.14] gi|228008794|gb|ACP44556.1| Deoxyribodipyrimidine photo-lyase [Sulfolobus islandicus Y.G.57.14] Length = 433 Score = 311 bits (797), Expect = 2e-82, Method: Composition-based stats. Identities = 140/475 (29%), Positives = 217/475 (45%), Gaps = 49/475 (10%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHG--ISARQSHFIYASLLQV 68 L R DLR+ DN L A + + KVI FI P Q S +F+ SL ++ Sbjct: 4 LFIFRRDLRLDDNTGLIKALEDCE-KVIPAFILDPRQVGNENEYKSEFAINFMINSLNEL 62 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128 L ++G + F + E + + V ++ N Y RD+ + K + Sbjct: 63 NDELRKRGSRLYVY----FGLAEEEIKNLLK--DVDAVYLNEDYTPFSKMRDERIRKYCE 116 Query: 129 HRV-ICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187 I KSF+D +L N Y+ +T F + ++ +++ + Sbjct: 117 DTGKIMKSFEDYLLTSKNDFKN-----YRNFTTFYNVVKNKQIRKPVQNNYTNYYK---- 167 Query: 188 VTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSP 247 D G + + ++ + + Y +++D A + LSP Sbjct: 168 ------NSLGDEHELPPRQGERGGRKEGIKLIER---ARQINY-DRKDFVAEDNRTFLSP 217 Query: 248 YLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPF 307 +L G LS R+ + L + + +L WR+FY L+A+Y +P Sbjct: 218 HLKFGTLSIREVYYSLLDSQA------------IIRQLYWRDFYT-LLAYYNERVFHEPL 264 Query: 308 IPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLV 367 IEW + L QAW +G TG+PIIDA MRQLN G M NR+RM+TA FLVK L++ Sbjct: 265 KREYNCIEWENNERLFQAWLEGKTGYPIIDAGMRQLNRTGDMPNRVRMLTAFFLVKVLII 324 Query: 368 DWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRH 427 DWRIGE+YF S+L+D D + NNG WQW AS G D + FR+F+P Q +DP+ +I+ Sbjct: 325 DWRIGEKYFASKLIDYDPSVNNGNWQWIASVGTDYI--FRVFDPWKQQVTYDPEAKYIKR 382 Query: 428 WLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQSL 482 W+ EL + + IH + + K+ YP PIVD + + Y +K + Sbjct: 383 WVDELESYDAEIIHNAYKYTLKS-----YPKPIVDWRIRVNLAKRLYEVCRKSKI 432 >gi|315126037|ref|YP_004068040.1| deoxyribodipyrimidine photolyase [Pseudoalteromonas sp. SM9913] gi|315014551|gb|ADT67889.1| deoxyribodipyrimidine photolyase [Pseudoalteromonas sp. SM9913] Length = 509 Score = 311 bits (797), Expect = 2e-82, Method: Composition-based stats. Identities = 107/491 (21%), Positives = 199/491 (40%), Gaps = 36/491 (7%) Query: 6 AMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASL 65 + +++VW + DLR++D++ L A N + ++ P + R F+Y S+ Sbjct: 2 RIKINIVWFKRDLRLSDHQPLKNAFSNG-LPTLLIYNFEPLLLDDAHYNERHWRFVYQSI 60 Query: 66 LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEV-RRDKLLE 124 + L++ +D L+S Q +T LF +++ +N RD ++ Sbjct: 61 CDLNTQLARFNSRVYIFN----EDMQTLLESLHSQFEITNLFSHQEIGLNNTFERDIAIK 116 Query: 125 KRLQHRVICKSFDDSVLLPP-GSILNHALQMYKVYTPFRKALIQNLVQADLRSL-PVPAI 182 QH + L P G+++ +++ + + + + + P+ Sbjct: 117 AWCQH------HHINWLESPTGAVIRGKRNRSNWNERWQQTMQAPIAIPNWKQIKPLTLT 170 Query: 183 RLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGT 242 P+ PS + ++ G + A +++ F E+ Y + P++ T Sbjct: 171 DYQTPILPSAYTQDNEH-------FQHGGPRLAREVMQSFFAERGKGYQKGISSPSLSRT 223 Query: 243 --SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPS 300 S+LSPYL+ G +S RQ + + + K + ++ H M + S Sbjct: 224 HCSRLSPYLAWGNISLRQVYQMAIDAYHSTSADKKGWKRPLAAFVSRLHWHCHFMQKFES 283 Query: 301 VCMG--KPFIPWTEKIEWNKDSH---LLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRM 355 C K P + D+ ++ W QG TG PIIDA MR L G+++ R+R Sbjct: 284 ECTMEFKALNPGYHAFPYRDDAQVTSDIERWAQGQTGIPIIDACMRCLKATGYINFRMRA 343 Query: 356 ITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQG 415 + SF+ L + W+ + LD + + Q AS + R +NP Q Sbjct: 344 MLVSFVTHHLNISWQQASFPLANYFLDFEPGIHYPQIQMQASVT--GINTIRHYNPIKQS 401 Query: 416 KRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKN------DLSLNYPLPIVDHKKACHH 469 + DP G FI+ W PEL +P +Y+H P L +YP P++D A Sbjct: 402 EDQDPTGAFIKKWCPELEKLPIEYLHQPWEQTPMEALFNDFKLGEDYPEPMLDLTTASKE 461 Query: 470 TLNQYYAAKKQ 480 + + +++ Sbjct: 462 ARERLWQYRER 472 >gi|225429814|ref|XP_002280771.1| PREDICTED: hypothetical protein [Vitis vinifera] Length = 549 Score = 311 bits (796), Expect = 2e-82, Method: Composition-based stats. Identities = 130/492 (26%), Positives = 214/492 (43%), Gaps = 50/492 (10%) Query: 4 TTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGI------SARQ 57 V +VW RNDLR+ DN+AL A +S A V+ V+ P + A + Sbjct: 47 RNGSGVAIVWFRNDLRVLDNEALVKAWASSQA-VLPVYCVDPRLFGTTHYFGFPKTGALR 105 Query: 58 SHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEV 117 + F+ L ++++L +G+ E L S ++ +++ E+ Sbjct: 106 AQFLIECLADLKRNLMNRGLNLLIQHGKPE----EILPSLAKTFEAHTVYAHKETCSEEL 161 Query: 118 RRDKLLEKRLQHRVI-----------------CKSFDDSVLLPPGSILNHALQMYKVYTP 160 ++L+ L+ V+ + S + + + VYT Sbjct: 162 NVERLVRNGLRQVVLPPSPGQSTSLSSSNHPKLQLIWGSTMYHIEDLPFSTSSLPDVYTQ 221 Query: 161 FRKAL-----IQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNA 215 FRK++ I+ ++ P P I G V + + F GE A Sbjct: 222 FRKSVESKCTIRICIRTPTLLGPPPNIEDWGSVPSIDQLGLHEEKVSR-GMRFIGGEAAA 280 Query: 216 LHILRKFCKEKV--YYYVEQRD-IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLI 272 L + ++ +K Y R+ + +++ SP+L+ G LSPR + +K + Sbjct: 281 LSRVNEYFWKKDLLKVYKATRNGMLGADYSTKFSPWLASGSLSPRFIYQEVKRYEKER-- 338 Query: 273 KPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTG 332 + + L ELIWR+++R L Y + E W++D + +AW+ G TG Sbjct: 339 QANDSTYWVLFELIWRDYFRFLSVKYRNSLFHLGGPRKVEA-RWSQDQTMFEAWRDGCTG 397 Query: 333 FPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGW 392 +P+IDA M++L+ G+M NR R I SFLV+D+ +DWR+G E+F + LLD D SN G W Sbjct: 398 YPLIDANMKELSATGFMSNRGRQIVCSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNW 457 Query: 393 QWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDL 452 + A GND R F+ Q K +DP+G ++ WLPEL +P + P Sbjct: 458 TYGAGVGNDPRE-DRYFSIPKQAKTYDPEGEYVAFWLPELQALPNDKRNFP--------- 507 Query: 453 SLNYPLPIVDHK 464 +Y IV K Sbjct: 508 GKSYINQIVPLK 519 >gi|77361123|ref|YP_340698.1| deoxyribodipyrimidine photolyase [Pseudoalteromonas haloplanktis TAC125] gi|76876034|emb|CAI87256.1| putative deoxyribodipyrimidine photolyase [Pseudoalteromonas haloplanktis TAC125] Length = 503 Score = 311 bits (796), Expect = 2e-82, Method: Composition-based stats. Identities = 105/489 (21%), Positives = 197/489 (40%), Gaps = 32/489 (6%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M +++VW + DLR++D++ L A N + ++ P + R F+Y S++ Sbjct: 1 MKINIVWFKRDLRLSDHQPLKNAFSNG-LPTLLLYNFEPLMLEDTHYNERHWRFVYQSIV 59 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEV-RRDKLLEK 125 ++ L++ + D L+S Q + +F +++ +N RDK ++ Sbjct: 60 ELNNQLTRFNACVYIFNLNMGD----LLESLKTQFEIVNIFSHQEIGLNNTFERDKAIKV 115 Query: 126 RLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185 QH I + G+++ +++ + + + +S+ + Sbjct: 116 WCQHNHINWQESQT-----GAVIRGKKNRNNWNERWQQTMQAPIAVPNWKSIKTITLNNY 170 Query: 186 GPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ--GTS 243 + Q D G A +L+ F E+ Y + P++ S Sbjct: 171 QAPELPSAYT------QNHDSFQQGGPLQARTVLQSFFAERGKGYQKGISSPSLSQVHCS 224 Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCM 303 +LSPYL+ G +S RQ + +E+ + + ++ H M + S C Sbjct: 225 RLSPYLAWGNISLRQVYQMAFDEYHSKHPDKRGWKRPLAAFVSRLHWHCHFMQKFESECS 284 Query: 304 GK--PFIPWTEKIEWNKDSH---LLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITA 358 + P + D H ++ W QG TG PIIDA MR L G+++ R+R + Sbjct: 285 MEFLALNPGYHVFPYRDDEHVKSDIERWVQGQTGIPIIDACMRCLKATGYINFRMRAMLV 344 Query: 359 SFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRF 418 SF+ L + W+ + LD + + Q AS + R +NP Q + Sbjct: 345 SFVTHHLNISWQQASFPLANYFLDFEPGIHYPQIQMQASVT--GINTIRHYNPIKQSEDQ 402 Query: 419 DPQGTFIRHWLPELNNVPTQYIHAPHSWLDKN------DLSLNYPLPIVDHKKACHHTLN 472 DP G+FI+ W PEL +P +Y+H P L +YP P++D A Sbjct: 403 DPTGSFIKKWCPELEKLPIEYLHQPWQQTPMEALFNDFKLGEDYPEPMLDLTAASKAARE 462 Query: 473 QYYAAKKQS 481 + + ++++ Sbjct: 463 RLWQYRERA 471 >gi|114561960|ref|YP_749473.1| deoxyribodipyrimidine photo-lyase [Shewanella frigidimarina NCIMB 400] gi|114333253|gb|ABI70635.1| Deoxyribodipyrimidine photo-lyase type I [Shewanella frigidimarina NCIMB 400] Length = 504 Score = 311 bits (796), Expect = 2e-82, Method: Composition-based stats. Identities = 111/497 (22%), Positives = 204/497 (41%), Gaps = 32/497 (6%) Query: 1 MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHF 60 M T ++++VW + DLR++D++ L A N D + ++ P + R F Sbjct: 1 MPDTIKQAINIVWFKRDLRLSDHQPLVDAF-NHDLPCLLIYTFEPFMLADSHYNERHWRF 59 Query: 61 IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYE-INEVRR 119 ++ SL + + L + F I+ LD + ++ +++ N R Sbjct: 60 VWQSLQDMNQQL----LRFNGQVYMFSMPMIDLLDEISQTFEIKNIYSHQEIGLHNSFER 115 Query: 120 DKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPV 179 DK + + + + S+ S P G+++ +++ + + + + + Sbjct: 116 DKTVARWCNQQPV--SWQQS---PTGAVVRGRKNRQAWDQHWQQVMNSPIAIPNWQQCQL 170 Query: 180 PAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAI 239 + T N + FQ G + A IL F + Y P++ Sbjct: 171 QKLDNYQEPTLDNAIMAHNDQFQI------GGPKAARTILSSFLTHRGKDYQRSISSPSL 224 Query: 240 QGT--SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAF 297 T S+LSPYL+ G +S +Q + + ++ K+ L + ++ H M Sbjct: 225 SRTHCSRLSPYLAWGNISLKQVYQATLTRYNEVQTSNKAWRKPLLAMMSRLHWHCHFMQK 284 Query: 298 YPSVCMGK--PFIPWTEKIEWNKD---SHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNR 352 + S C + P P + D +Q W G TG PIIDA MR L G+++ R Sbjct: 285 FESQCSMEFTPVNPGYVDYPYRTDDKVQQDIQRWADGQTGIPIIDACMRCLKETGYINFR 344 Query: 353 LRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPT 412 +R + SF+ L + W+ + LD + + Q AS + R++NP Sbjct: 345 MRAMLVSFVTHHLNIAWQHASLPLANYFLDFEPGIHYPQLQMQASVT--GINTIRLYNPV 402 Query: 413 IQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDL------SLNYPLPIVDHKKA 466 Q + DP+G FIR W PEL N+P +YIH P + +YP P++D +A Sbjct: 403 KQSQDQDPRGEFIRLWCPELTNLPNEYIHQPWQQPPMEAIFNDIILGRDYPEPMIDLTQA 462 Query: 467 CHHTLNQYYAAKKQSLL 483 ++ ++ ++Q + Sbjct: 463 SQTARDRLWSYREQPQV 479 >gi|257053657|ref|YP_003131490.1| cryptochrome, DASH family [Halorhabdus utahensis DSM 12940] gi|256692420|gb|ACV12757.1| cryptochrome, DASH family [Halorhabdus utahensis DSM 12940] Length = 478 Score = 311 bits (796), Expect = 2e-82, Method: Composition-based stats. Identities = 120/481 (24%), Positives = 190/481 (39%), Gaps = 37/481 (7%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISAR-----------Q 57 +VWLR DLR DN A + +V+ V+ P ++ Q + Sbjct: 4 TAVVWLRRDLRTRDNA--TLAAACAADRVLPVYCFEPRRYGQRAFGGAASFEYDGVGAGR 61 Query: 58 SHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEV 117 + F ++ ++ L + G L L Y E Sbjct: 62 AQFEREAVGDLRDRLREIGSDLFVRHGRPD----AVLPDLVEAVDADHLHYQTLPIPEER 117 Query: 118 RRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSL 177 R+ + + L V + L + +M +TP+R+++ + Sbjct: 118 TREHQVRRALPEAVTVERHWTHTLHHVEDLPTPYDEMPDTFTPWRQSVEAESRVREPIEA 177 Query: 178 PVPAIRLTGPVTPSNIPRFFDYPF-------QAIDPMFPIGEQNALHILRKFCKEKVY-- 228 P P IP D + F GE L ++ E Sbjct: 178 PAVPPVPADAPQPGPIPELADLGVVGDVPDDDRMPLDFEGGETPGQRRLEQYVWETDSLR 237 Query: 229 YYVEQRD-IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIW 287 Y + R+ + +S+ SP+ ++G LSPR + +KE + + + EL W Sbjct: 238 AYKQTRNGLVGRDYSSKFSPWQNVGCLSPRDVYQTVKEYERERV--SNDSTYWLNFELRW 295 Query: 288 REFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIG 347 R+F++ A Y I ++W +D + W++G TG P +DAAMR+L G Sbjct: 296 RDFFQFQFAKYGGKFFTPGGIRERTDLDWRRDESDFRRWQEGRTGVPFVDAAMRELVATG 355 Query: 348 WMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFR 407 ++ NR R ASFLV DL +DWR G ++ LLD D ASN G W + A GNDS Sbjct: 356 YVSNRARQNAASFLVHDLGIDWRWGGAHYEHHLLDYDPASNYGNWAYIAKVGNDSREGG- 414 Query: 408 IFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND------LSLNYPLPIV 461 F+ Q +R+DP G +I W PEL+ + +Y P ++ L +YP P+V Sbjct: 415 -FDVLSQAERYDPGGEYISRWCPELDGLIAEYAREPWRMDEEEQRERGLVLGEDYPEPMV 473 Query: 462 D 462 D Sbjct: 474 D 474 >gi|16330358|ref|NP_441086.1| DNA photolyase [Synechocystis sp. PCC 6803] gi|1652848|dbj|BAA17766.1| DNA photolyase [Synechocystis sp. PCC 6803] Length = 453 Score = 310 bits (795), Expect = 2e-82, Method: Composition-based stats. Identities = 124/450 (27%), Positives = 210/450 (46%), Gaps = 30/450 (6%) Query: 41 FIATPEQWRQHG-----ISARQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLD 95 + P Q+ Q +S+F+ S+ + +SL + G + + Sbjct: 2 YCYDPRQFAQTHQGFAKTGPWRSNFLQQSVQNLAESLQKVGNKLLVTTGLPE----QVIP 57 Query: 96 SYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ-HRVICKSFDDSVLLPPGSILNHALQM 154 Q ++Y+R+ E+ ++ L K+L + K + S L P + + Sbjct: 58 QIAKQINAKTIYYHREVTQEELDVERNLVKQLTILGIEAKGYWGSTLCHPEDLPFSIQDL 117 Query: 155 YKVYTPFRKALIQNLVQADL------RSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMF 208 ++T FRK + + + + LP P I+L P ++ +++ F Sbjct: 118 PDLFTKFRKDIEKKKISIRPCFFAPSQLLPSPNIKLELTAPPPEFFPQINFDHRSV-LAF 176 Query: 209 PIGEQNALHILRKFCK--EKVYYYVEQRD-IPAIQGTSQLSPYLSIGVLSPRQCWNRLKE 265 GE L L+ + +++ Y E R+ + +S+ SP+L++G LSPR + +K Sbjct: 177 QGGETAGLARLQDYFWHGDRLKDYKETRNGMVGADYSSKFSPWLALGCLSPRFIYQEVKR 236 Query: 266 EFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQA 325 + + + EL+WR+F+R + Y + + + + W +D + Sbjct: 237 YEQERV--SNDSTHWLIFELLWRDFFRFVAQKYGNKLFNRGGL-LNKNFPWQEDQVRFEL 293 Query: 326 WKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDL 385 W+ G TG+P++DA MR+LN G+M NR R ASFL K+L +DWR G E+F S L+D D+ Sbjct: 294 WRSGQTGYPLVDANMRELNLTGFMSNRGRQNVASFLCKNLGIDWRWGAEWFESCLIDYDV 353 Query: 386 ASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHS 445 SN G W + A GND+ FR FN Q +++DPQGT++RHWLPEL N+P IH P Sbjct: 354 CSNWGNWNYTAGIGNDAR-DFRYFNIPKQSQQYDPQGTYLRHWLPELKNLPGDKIHQPWL 412 Query: 446 WLDKN------DLSLNYPLPIVDHKKACHH 469 L ++YP P V+ ++ Sbjct: 413 LSATEQKQWGVQLGVDYPRPCVNFHQSVEA 442 >gi|297158620|gb|ADI08332.1| deoxyribodipyrimidine photo-lyase [Streptomyces bingchenggensis BCW-1] Length = 466 Score = 310 bits (795), Expect = 3e-82, Method: Composition-based stats. Identities = 136/478 (28%), Positives = 211/478 (44%), Gaps = 31/478 (6%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 V + DLR+ DN AL A +++ V+ +F+ + ++ F+ L + Sbjct: 5 VSVALFTADLRVHDNPALDGALREAES-VVPLFVVDSGIRDADFVVPNRAVFLADCLADL 63 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128 +L +G + D ++ + + RR+ L L Sbjct: 64 DAALRARGGRLVVRRG----DVVQETCRVAARVGAGAVHMAGGASGYAARREARLRVALA 119 Query: 129 --------HRVICKSFDDSVLLPPG-----SILNHALQMYKVYTPFRKALIQNLVQADLR 175 H VL+P G S + + V+TP+ + +A L Sbjct: 120 RERRELRVHEGAVTVVAPGVLVPSGKSHSTSGGSQRKDHFAVFTPYYRRWRSEPWRAPLP 179 Query: 176 SLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRD 235 + V + P A + GE A LR++ + Y E++D Sbjct: 180 APRVVRVPSIRSAALPTAASLA--PGAASLDLPAGGETAARRRLRRWAAGPLADYAERQD 237 Query: 236 IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLM 295 A TS+LSPYL G LSP + R + GA +++ +L WR+F+ ++ Sbjct: 238 DLAGDATSRLSPYLHFGCLSPVEVARRALDA-------GGPGAEAFVRQLAWRDFHLQVL 290 Query: 296 AFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRM 355 A P + + P ++ W +D+ + AW G TG P++DAAMRQL GWM R R+ Sbjct: 291 AARPDAA-HRDYRPRHDR--WRQDADEVAAWCAGLTGCPVVDAAMRQLTREGWMPGRARL 347 Query: 356 ITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQG 415 + ASFL K L +DWR G +F++ L+DGD+A+N WQWAA TG D+ P RI NP IQ Sbjct: 348 LAASFLAKTLYIDWRTGARHFLALLVDGDIANNQLNWQWAAGTGTDTRP-GRILNPLIQA 406 Query: 416 KRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQ 473 R DP+G ++R W+PEL V +H P + +L YP PIVD +A + Sbjct: 407 LRHDPEGEYVRRWVPELAAVQGPAVHRPWQLPGPDRAALAYPDPIVDLAEAADRFRRR 464 >gi|323473750|gb|ADX84356.1| Deoxyribodipyrimidine photo-lyase [Sulfolobus islandicus REY15A] Length = 433 Score = 310 bits (795), Expect = 3e-82, Method: Composition-based stats. Identities = 141/475 (29%), Positives = 218/475 (45%), Gaps = 49/475 (10%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHG--ISARQSHFIYASLLQV 68 L R DLR+ DN L A + + KVI FI P Q S +F+ SL ++ Sbjct: 4 LFIFRRDLRLDDNTGLIKALEDCE-KVIPAFILDPRQVGNENEYKSEFAINFMINSLNEL 62 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128 L ++G + F + E + + V ++ N Y RD+ + K + Sbjct: 63 NDELRKRGSRLYVY----FGLAEEVIKNLLK--DVDAVYLNEDYTPFSKMRDERIRKYCE 116 Query: 129 HRV-ICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187 I KSF+D +L N Y+ +T F + ++ +++ + Sbjct: 117 DTGKIMKSFEDYLLTSKNDFKN-----YRNFTTFYNVVKNKQIRKPVQNNYTNYYK---- 167 Query: 188 VTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSP 247 D G + + ++ + + Y +++D A + LSP Sbjct: 168 ------NSLGDEHELPPRQGERGGRKEGIKLIER---ARQINY-DRKDFVAEDNRTFLSP 217 Query: 248 YLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPF 307 +L G LS R+ + L + + +L WR+FY L+A+Y +P Sbjct: 218 HLKFGTLSIREVYYSLLDSQA------------IIRQLYWRDFYT-LLAYYNERVFHEPL 264 Query: 308 IPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLV 367 IEW + LLQAW +G TG+PIIDA MRQLN G M NR+RM+TA FLVK LL+ Sbjct: 265 KREYNCIEWENNERLLQAWVEGKTGYPIIDAGMRQLNRTGDMPNRVRMLTAFFLVKVLLI 324 Query: 368 DWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRH 427 DWRIGE+YF S+L+D D + NNG WQW AS G D + FR+F+P Q +D + +++ Sbjct: 325 DWRIGEKYFASKLIDYDPSVNNGNWQWIASVGTDYI--FRVFDPWKQQITYDQEAKYVKR 382 Query: 428 WLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQSL 482 W+ EL + ++ IH + + K NYP PIVD + + Y +K + Sbjct: 383 WVDELESYDSEIIHNAYKYTLK-----NYPKPIVDWRIRVNLAKRLYEVCRKSKI 432 >gi|229583293|ref|YP_002841692.1| Deoxyribodipyrimidine photo-lyase [Sulfolobus islandicus Y.N.15.51] gi|228014009|gb|ACP49770.1| Deoxyribodipyrimidine photo-lyase [Sulfolobus islandicus Y.N.15.51] Length = 433 Score = 310 bits (795), Expect = 3e-82, Method: Composition-based stats. Identities = 140/475 (29%), Positives = 218/475 (45%), Gaps = 49/475 (10%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHG--ISARQSHFIYASLLQV 68 L R DLR+ DN L A + + KVI FI P Q S +F+ SL ++ Sbjct: 4 LFIFRRDLRLDDNTGLIKALEDCE-KVIPAFILDPRQVGNENEYKSEFAINFMINSLNEL 62 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128 L ++G + F + E + + V ++ N Y RD+ + K + Sbjct: 63 NDELRKRGSRLYVY----FGLAEEVIKNLLK--DVDAVYLNEDYTPFSKMRDERIRKYCE 116 Query: 129 HRV-ICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187 I KSF+D +L N Y+ +T F + ++ +++ + Sbjct: 117 DTGKIMKSFEDYLLTSKNDFKN-----YRNFTTFYNVVKNKQIRKPVQNNYTNYYK---- 167 Query: 188 VTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSP 247 D G + + ++ + + Y +++D A + LSP Sbjct: 168 ------NSLGDEHELPPRQGERGGRKEGIKLIER---ARQINY-DRKDFVAEDNRTFLSP 217 Query: 248 YLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPF 307 +L G LS R+ + L + + +L WR+FY L+A+Y +P Sbjct: 218 HLKFGTLSIREVYYSLLDSQA------------IIRQLYWRDFYT-LLAYYNERVFHEPL 264 Query: 308 IPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLV 367 IEW + L QAW +G TG+PIIDA MRQLN G M NR+RM+TA FLVK L++ Sbjct: 265 KREYNCIEWENNERLFQAWLEGKTGYPIIDAGMRQLNRTGDMPNRVRMLTAFFLVKVLII 324 Query: 368 DWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRH 427 DWRIGE+YF S+L+D D + NNG WQW AS G D + FR+F+P Q +DP+ +I+ Sbjct: 325 DWRIGEKYFASKLIDYDPSVNNGNWQWIASVGTDYI--FRVFDPWKQQVTYDPEAKYIKR 382 Query: 428 WLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQSL 482 W+ EL + + IH + + K+ YP PIVD + + + Y +K + Sbjct: 383 WVDELESYDAEIIHNAYKYTLKS-----YPKPIVDWRIRVNLSKRLYEVCRKSKI 432 >gi|254821492|ref|ZP_05226493.1| Phr protein [Mycobacterium intracellulare ATCC 13950] Length = 442 Score = 310 bits (795), Expect = 3e-82, Method: Composition-based stats. Identities = 140/472 (29%), Positives = 220/472 (46%), Gaps = 34/472 (7%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 L+W R DLR+ D+ +V+A F+ P + R+ F+ SL ++ Sbjct: 2 PALLWFRRDLRLRDHP--ALLAAAEAHEVLACFVLDPRL--ESSSGQRRLQFLGDSLRRL 57 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128 + L + +V + + + + T + + + RRD+ + L Sbjct: 58 RADLDGRLLVTRGRPDT-------QIPHIAKEIGATSVHISEDFAPFGTRRDERVRAALG 110 Query: 129 HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188 V + L+ PG + Y+V+TPF + + +A S A L Sbjct: 111 A-VPLVATGSPYLVSPGRVTKPDGSPYQVFTPFLRQWHKVGWRAPATSGAASAHWLDPAR 169 Query: 189 TPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPY 248 + P + GE A + F + Y + R+ P ++GTS++S + Sbjct: 170 LRVGHC---EIPDPGVPLDVAAGEAAARAQWKSFLDNGLRSYADDRNRPDLRGTSRMSAH 226 Query: 249 LSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFI 308 L G + PR DL ++ GA ++L EL +R+FY ++ +P+ + + Sbjct: 227 LKFGTVHPRTL-------AADLDLRG-GGAQAYLRELAFRDFYADVLHHWPASAW-RNWN 277 Query: 309 PWTEKIEWN---KDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365 + I + + AWK G TGFP +DA MRQL G+MHNR+RM ASFLVKDL Sbjct: 278 KDFDGIPTDSGAEAERRFAAWKAGETGFPFVDAGMRQLRETGFMHNRVRMSVASFLVKDL 337 Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425 + W+ G E+F+ QL+DGD+A+N GWQW A G D+ PYFR+F+PT QG++FDP G +I Sbjct: 338 HLPWQWGAEWFLDQLVDGDMANNQHGWQWCAGCGTDAAPYFRVFDPTTQGEKFDPTGDYI 397 Query: 426 RHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477 R W+PEL + + L + NYP PIVDH L +Y + Sbjct: 398 RRWVPELRSADDVH-------LRRGRRPDNYPQPIVDHAAERAEALRRYQSI 442 >gi|332532093|ref|ZP_08407976.1| deoxyribodipyrimidine photolyase/cryptochrome family protein [Pseudoalteromonas haloplanktis ANT/505] gi|332038434|gb|EGI74878.1| deoxyribodipyrimidine photolyase/cryptochrome family protein [Pseudoalteromonas haloplanktis ANT/505] Length = 509 Score = 310 bits (794), Expect = 3e-82, Method: Composition-based stats. Identities = 104/489 (21%), Positives = 201/489 (41%), Gaps = 34/489 (6%) Query: 8 SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67 +++VW + DLR++D++ L A N + ++ P + R F+Y S+++ Sbjct: 4 KINIVWFKRDLRLSDHQPLKNAFSNG-LPTLLLYDFEPLLLEDAHYNERHWRFVYQSIVE 62 Query: 68 VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEV-RRDKLLEKR 126 + L++ + + L+S +Q + +F +++ +N RDK+++ Sbjct: 63 LNNQLARFNACVYIFNL----NMNDLLESLKMQFEIVNIFSHQEIGLNNTFERDKVIKAW 118 Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL-T 185 QH I + G+++ +++ + + + +S+ + Sbjct: 119 CQHNHINWQESQT-----GAVIRGKKNRNNWNERWQQTMQAPIAVPNWKSIKTITLNNYQ 173 Query: 186 GPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGT--S 243 P PS + D G +A +++ F E+ Y + P++ T S Sbjct: 174 APELPSAYTQDHD-------SFQQGGPLHARTVMQSFFAERGKGYQKGISSPSLSQTHCS 226 Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCM 303 +LSPYL+ G +S RQ + +E+ + + ++ H M + S C Sbjct: 227 RLSPYLAWGNISLRQVYQMAIDEYHSKHPDKRGWKRPLAAFVSRLHWHCHFMQKFESECS 286 Query: 304 GK--PFIPWTEKIEWNKDSH---LLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITA 358 + P + D ++ W QG TG PIIDA MR L G+++ R+R + Sbjct: 287 MEFLALNPGYHVFPYRNDERVKNDIERWAQGQTGIPIIDACMRCLKATGYINFRMRAMLV 346 Query: 359 SFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRF 418 SF+ L + W+ + LD + + Q AS + R +NP Q + Sbjct: 347 SFVTHHLNISWQQASFPLANYFLDFEPGIHYPQIQMQASVT--GINTIRHYNPIKQSEDQ 404 Query: 419 DPQGTFIRHWLPELNNVPTQYIHAPHSWLDKN------DLSLNYPLPIVDHKKACHHTLN 472 DP G+FI+ W PEL +P +Y+H P L +YP P++D A Sbjct: 405 DPTGSFIKKWCPELEKLPIEYLHQPWEQTPMEALFNDFKLGEDYPEPMLDLTAASKEARE 464 Query: 473 QYYAAKKQS 481 + + ++++ Sbjct: 465 RLWQYRERA 473 >gi|242096612|ref|XP_002438796.1| hypothetical protein SORBIDRAFT_10g026420 [Sorghum bicolor] gi|241917019|gb|EER90163.1| hypothetical protein SORBIDRAFT_10g026420 [Sorghum bicolor] Length = 577 Score = 310 bits (794), Expect = 3e-82, Method: Composition-based stats. Identities = 133/493 (26%), Positives = 219/493 (44%), Gaps = 52/493 (10%) Query: 6 AMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATP-------EQWRQHGISARQS 58 V +VW RNDLR+ DN+AL A S+A V+ V+ P + A ++ Sbjct: 76 GAGVAVVWFRNDLRVLDNEALLRAWSASEA-VLPVYCVDPRVFAGSTHYFGFPKTGALRA 134 Query: 59 HFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVR 118 F+ L +++ L +KG+ E L S ++ +++ E+ Sbjct: 135 QFLIECLGDLKQILRKKGLDLLVRHGKPE----EILPSIAKAVSAHTIYAHKETCSEELL 190 Query: 119 RDKLLEKRLQHRVICKS---------------FDDSVLLPPGSILNHALQMYKVYTPFRK 163 ++L+ K L+ I + + + + + VYT FRK Sbjct: 191 VERLVSKGLEQVQIAQGGASVPKKPLNPRLQLIWGATMYHIDDLPFPVSNLPDVYTQFRK 250 Query: 164 AL-----IQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDP----MFPIGEQN 214 A+ ++N + P+P+ + IP F GE Sbjct: 251 AVESKSSVRNCTKLPPSLGPLPSSSIDEIGGWGAIPTLESLGLSVTKSEKGMHFIGGENA 310 Query: 215 ALHILRKFC--KEKVYYYVEQRD-IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLL 271 AL + ++ K+++ Y R+ + +++ SP+L+ G LSPR +K + Sbjct: 311 ALGRVHEYFWKKDQLKDYKVTRNGMLGPDYSTKFSPWLASGSLSPRYICEEVKRYEKQRV 370 Query: 272 IKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYT 331 + L ELIWR+++R L A Y + P +W++D L ++W+ G T Sbjct: 371 --ANDSTYWVLFELIWRDYFRFLSAKYGNTIFHLGG-PRKVVSKWSQDQALFESWRDGRT 427 Query: 332 GFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGG 391 G+P+IDA MR+L+ G+M NR R I SFLV+D+ +DWR+G E+F + LLD D ASN G Sbjct: 428 GYPLIDANMRELSATGFMSNRGRQIVCSFLVRDMGIDWRMGAEWFETCLLDYDPASNYGN 487 Query: 392 WQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND 451 W + A GND R F+ Q K +DP+G ++ +WLPEL ++ + + P Sbjct: 488 WTYGAGVGNDPRE-DRYFSIPKQAKSYDPEGEYVAYWLPELRSLAKERRNFP-------- 538 Query: 452 LSLNYPLPIVDHK 464 +Y IV K Sbjct: 539 -GASYIRQIVQLK 550 >gi|315605497|ref|ZP_07880534.1| deoxyribodipyrimidine photolyase [Actinomyces sp. oral taxon 180 str. F0310] gi|315312764|gb|EFU60844.1| deoxyribodipyrimidine photolyase [Actinomyces sp. oral taxon 180 str. F0310] Length = 475 Score = 310 bits (794), Expect = 3e-82, Method: Composition-based stats. Identities = 142/496 (28%), Positives = 219/496 (44%), Gaps = 54/496 (10%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIA----TPEQWRQHG---ISARQSHFI 61 L+WLR+DLR+ D+ AL AAC + V+A++I T E +HG + A + Sbjct: 2 TTLIWLRDDLRLADHPALTAACTGAHGPVVALWIHETRRTDEDNNRHGPRPLGAATRWWY 61 Query: 62 YASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDK 121 + SL Q+ L+ GI + + +D+ T + + R+Y R D Sbjct: 62 HRSLQQLAPRLADLGIPLIFARGDAARIMRRVVDTLQP----TFVHWTRRYAPAACRLDA 117 Query: 122 LLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPV-- 179 +++ L+ R S S+L P + + Y+V+TPF A+ + L Sbjct: 118 AIKQELKSRTEVHSHPGSLLAEPWLMRTASGSHYQVFTPFSHAVADLPLTPLLPEPSPVD 177 Query: 180 ----PAIRLTGPVTPSNIPRFFDYPF---------QAIDPMFPIGEQNALHILRKFCKEK 226 A L + D + + GE A L Sbjct: 178 EPDGAATDLATLREDGVLHNLEDIGLLDDGPDWWEDTLAQHWEPGELAARQQLDA-IDGW 236 Query: 227 VYYYVEQRDIPAIQ-GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNEL 285 + Y ++RD+P + TS++SP L G LSPRQ + +W +L Sbjct: 237 LPGYAKRRDLPGEETSTSRISPRLRCGELSPRQALAAAR-----SSTAAGEDIAAWTRQL 291 Query: 286 IWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNT 345 WREF HL+ + P P E+ ++ D HL++AW+QG TG ++D M QL Sbjct: 292 YWREFCWHLLHHREHL-EDTPMRPAFEEFPYHPDDHLVRAWRQGRTGIDLVDGGMWQLWQ 350 Query: 346 IGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPY 405 GWMHNR+RM+ AS K++L W+ GE++F L+D D A+N WQW A +G D+ PY Sbjct: 351 TGWMHNRVRMVAASLFTKNMLQPWQDGEQWFWETLVDADEANNPISWQWVAGSGADAAPY 410 Query: 406 FRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKK 465 FRIFNP +Q RFDP ++++ W+PE P +P+VD + Sbjct: 411 FRIFNPELQRTRFDPHSSYVKRWIPEGLARPV--------------------VPVVDLAE 450 Query: 466 ACHHTLNQYYAAKKQS 481 + L Y + S Sbjct: 451 SRREALAAYEQVRAAS 466 >gi|150026080|ref|YP_001296906.1| deoxyribodipyrimidine photolyase PhrB2 [Flavobacterium psychrophilum JIP02/86] gi|149772621|emb|CAL44104.1| Deoxyribodipyrimidine photolyase PhrB2 [Flavobacterium psychrophilum JIP02/86] Length = 502 Score = 310 bits (794), Expect = 4e-82, Method: Composition-based stats. Identities = 110/484 (22%), Positives = 203/484 (41%), Gaps = 32/484 (6%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 V++VW + DLR TDN+AL+ A H+S ++ +++ P R F+Y SLL + Sbjct: 6 VNIVWFKRDLRFTDNEALFHA-HHSGLPLLLIYVFEPSVMNYDDSDVRHWRFVYESLLDM 64 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWL-DSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127 Q L + F + + + V +F +++ N++ D+ +E + Sbjct: 65 QLKLD-----LVASKIYFFHNESKIIFSELIKIFNVQTIFSHQEIG-NKITFDRDIEMQA 118 Query: 128 ---QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL 184 ++ +I K F ++ + + + DL+ L + + Sbjct: 119 FFNKNNIIWKEFQLH------GVIRKLKSRQNWDKKWEDVMRASPRIIDLKDLKIEILSD 172 Query: 185 TGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIP--AIQGT 242 + + + GE A L F K++ Y + P + +G Sbjct: 173 SFYQEFKGEILNPEITTHNKN-FQQGGENFAWRYLDSFVKKRYVNYSKHISKPLLSRKGC 231 Query: 243 SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVC 302 S+LSPYL+ G +S R + + + K K ++++ L W + ++ Sbjct: 232 SRLSPYLTYGNISMRAIYQYTNQHYE--TSKNKRAILNFVSRLHWHCHFMQKFEDECTME 289 Query: 303 MGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLV 362 + I+ K+ ++AW++G TG PI+DA MR L T G+++ R+R + SF Sbjct: 290 FENANRAYDVLIK-PKNETYIKAWQEGKTGVPIVDACMRCLVTTGYINFRMRAMVVSFFT 348 Query: 363 KDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQG 422 +L DWR + Q LD + + Q +G + RI+NP + DP+G Sbjct: 349 FNLWQDWRELH-FLARQFLDYEPGIHYPQIQMQ--SGTTGINTIRIYNPIKNSEEHDPEG 405 Query: 423 TFIRHWLPELNNVPTQYIHAPHSWLD------KNDLSLNYPLPIVDHKKACHHTLNQYYA 476 FI+ WLPEL +P +H P D + +YP PIV+ + + + ++ Sbjct: 406 IFIKQWLPELAEIPLSLLHEPWKMNDMEQQFYNCKIGEDYPTPIVNIDQTRKYASDIVWS 465 Query: 477 AKKQ 480 +K+ Sbjct: 466 FRKK 469 >gi|301609141|ref|XP_002934138.1| PREDICTED: cryptochrome-2 [Xenopus (Silurana) tropicalis] Length = 531 Score = 310 bits (793), Expect = 4e-82, Method: Composition-based stats. Identities = 110/437 (25%), Positives = 182/437 (41%), Gaps = 23/437 (5%) Query: 57 QSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINE 116 + F+ SL + SL + + + + + + + E Sbjct: 29 RGRFLLQSLEDLDTSLRKLNSRLFVVRG----QPADVFPRLFKECKFSTPTFEYDSEPFG 84 Query: 117 VRRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLV-QADLR 175 RD ++ K + + ++S L L+ +++ P Q ++ + +L Sbjct: 85 KERDAVIMKLAKEAGVEVIVENSHTLY---DLDRIIELNGHSPPLTYKRFQAIISRMELP 141 Query: 176 SLPVPAIRLTGPVTPSNIPRFFDYPFQAIDP-MFPIGEQNALHILRKFCKEKVYYYVEQR 234 P P++ +++ + + P ++P GE AL L + + K + +R Sbjct: 142 RRPAPSVTRQQMEGCNSLCIASGFHSEIKGPSIWPGGETEALARLDRHLERKAWVANYER 201 Query: 235 DIPAIQGT----SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREF 290 + LSPYL G LS R + RLKE + + K S +L+WREF Sbjct: 202 PRMNANSLLASPTGLSPYLRFGCLSCRLFYYRLKELYKKVK-KNSPPPLSLYGQLLWREF 260 Query: 291 YRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMH 350 + P + P +I W+K+ L W +G TGFP IDA M QL GW+H Sbjct: 261 FYTAATNNPKFDQMEG-NPICVQIPWDKNPKALAKWAEGKTGFPWIDAIMTQLRQEGWIH 319 Query: 351 NRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIF 409 + R A FL + DL W G + F LLD D + N G W W S +F + Sbjct: 320 HLARHAVACFLTRGDLWNSWECGVKVFDELLLDADFSVNAGSWMW-LSCSAFFQQFFHCY 378 Query: 410 NPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLD------KNDLSLNYPLPIVDH 463 P G+R DP G ++R +LP L P++YI+ P S + K + ++YP PIV+H Sbjct: 379 CPVGFGRRTDPSGDYVRRYLPVLKAFPSRYIYEPWSAPESVQKEAKCIIGIDYPKPIVNH 438 Query: 464 KKACHHTLNQYYAAKKQ 480 +A + + +Q Sbjct: 439 AEASRMNIERMKQTYQQ 455 >gi|290975950|ref|XP_002670704.1| predicted protein [Naegleria gruberi] gi|284084266|gb|EFC37960.1| predicted protein [Naegleria gruberi] Length = 553 Score = 310 bits (793), Expect = 4e-82, Method: Composition-based stats. Identities = 130/535 (24%), Positives = 226/535 (42%), Gaps = 80/535 (14%) Query: 1 MKATT-AMSVHLVWLRNDLRITDNKALYAACHNSDAK--------VIAVFIATPEQWRQH 51 M T + L+W RNDLR+ DN++L +++ V+ ++ P + Sbjct: 1 MSTTNNTLKKALLWFRNDLRLHDNESLIKTLRLANSSNNNTSKVGVLPLYCFDPRHFGFS 60 Query: 52 GIS------ARQSHFIYASLLQVQKSL-SQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVT 104 I A ++ F+ S+ ++K+L ++ G+ E + C Q + Sbjct: 61 RIGKFRKANANRTRFLTESVDNLRKNLMNEWGLKLMIQ----IGHPEEIIPHLCSQYEIE 116 Query: 105 KLFYNRQYEINEVRRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKA 164 ++F +++ E +E+ L+ ++ ++ + + V+T FR+ Sbjct: 117 QVFADKEVTSEET----SIEQVLEKQINVNYSYGFSMVHVEDLPFKIENLPHVFTDFRRK 172 Query: 165 LIQ------------------------NLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYP 200 + NL+Q + P +++ G + Sbjct: 173 VENPKLIVRPLLQLSPNEKKLISSRVVNLIQDENALGKTPDLKVLGYTDEEISEMMENLK 232 Query: 201 FQAIDPMFPIGEQNALHILRKFC--KEKVYYYVEQRD-IPAIQGTSQLSPYLSIGVLSPR 257 F GE AL L + ++++ Y E R+ + +S+LSP+LS+G +SPR Sbjct: 233 DPRSVLHFKGGEDEALARLNDYLWTQDRLKTYKETRNGLVGEAYSSKLSPWLSLGCISPR 292 Query: 258 QCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG------------- 304 + ++ +K + + + + EL+WR+++R + + Sbjct: 293 KIYHEVKRYEKERV--ENDSTYWLIFELLWRDYFRFFAEKFGNHIFMLKGVTRASSKRKG 350 Query: 305 -------KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMIT 357 ++ W +D L + W G TG P +DA MR+L GWM NR R Sbjct: 351 LIGDSSSNKVESKYDETRWKQDLKLFKLWADGKTGLPFVDANMRELKISGWMSNRGRQNV 410 Query: 358 ASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTG-NDSVPYFRIFNPTIQGK 416 ASFL KDL +DWR+G EYF S LLD + SN G W +AA G D R FN QG Sbjct: 411 ASFLSKDLNLDWRLGAEYFESLLLDHSVTSNWGNWLYAAGVGDVDPRGEARYFNVVKQGF 470 Query: 417 RFDPQGTFIRHWLPELNNVPTQYIHAPHSWLD------KNDLSLNYPLPIVDHKK 465 +D G F++ W+PEL+ VP + IHAP+ + K + ++YP +V+ K Sbjct: 471 DYDFNGEFVKLWIPELDQVPQRCIHAPYLMSESEQTNAKCTIGVDYPKSLVNVKA 525 >gi|260906395|ref|ZP_05914717.1| putative deoxyribodipyrimidine photolyase [Brevibacterium linens BL2] Length = 494 Score = 310 bits (793), Expect = 4e-82, Method: Composition-based stats. Identities = 144/509 (28%), Positives = 209/509 (41%), Gaps = 62/509 (12%) Query: 3 ATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIA---TPEQWRQHGISARQSH 59 TT + LVW R+DLR++D+ AL AA +D +VIAV+I + + Sbjct: 2 GTTDEDLTLVWFRDDLRVSDHAALTAA--RADGRVIAVWIREARDSQGLGPRPLGGASRW 59 Query: 60 FIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRR 119 + + SL + + LS GI + ++ + V + ++R+Y Sbjct: 60 WAHESLAILHQELSDLGIPLLF----AAGEAAAIIPQLTGSLGVGAVRWSRRYAPASRAL 115 Query: 120 DKLLEKRLQHRV-ICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLP 178 D ++ L + S S+L+ P + YKV+TPF KA+ V L + Sbjct: 116 DSQIKTVLHEQGLAVHSHTGSLLVEPWTAAPQGGDHYKVFTPFWKAVSGREVGDVLPTPE 175 Query: 179 VPAIRLTGPVTPSNIPRF-------------------------FDYPFQAIDPMFPIGEQ 213 + V + + I + G + Sbjct: 176 PQSPIDRSLVESARDCTAVTDLDGLGLLDGTGTGSGHFAAVHGPRWWQDTIACHWLPGTR 235 Query: 214 NALHILRKFCKEKVYYYVEQRDIPA-IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLI 272 A L + Y RD+P+ TS+LSP L G LSPRQ + + Sbjct: 236 AAADQLDD-LAVGIDGYSSTRDVPSDANSTSRLSPRLRFGELSPRQLLHAAQT----TRS 290 Query: 273 KPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTG 332 +W+ +L WREF HL YP + P + D L W+ G TG Sbjct: 291 VTPDDRAAWVRQLYWREFSWHLTYHYPDIDYT-PIRREFRNFPYEDDDEALAHWRSGATG 349 Query: 333 FPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGW 392 +P+IDA M QL GWMHNR+RM+TASFL K+LL W GE++F L+D D A+N W Sbjct: 350 YPLIDAGMAQLWETGWMHNRVRMVTASFLTKNLLQHWWCGEQWFWDALVDADEANNPVSW 409 Query: 393 QWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDL 452 QW A +G D+ PYFR+FNP Q +RFDP G ++ WLP Sbjct: 410 QWVAGSGADAAPYFRVFNPERQRERFDPDGAYVDDWLPYPPAAAPAP------------- 456 Query: 453 SLNYPLPIVDHKKACHHTLNQYYAAKKQS 481 IVD + L+ Y K S Sbjct: 457 -------IVDLADSRQAALSAYDRMKNMS 478 >gi|188536103|ref|NP_001120929.1| cryptochrome-2 isoform 2 [Homo sapiens] Length = 532 Score = 310 bits (793), Expect = 5e-82, Method: Composition-based stats. Identities = 111/452 (24%), Positives = 176/452 (38%), Gaps = 30/452 (6%) Query: 52 GISARQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQ 111 + F+ SL + SL + + + + VT+L + Sbjct: 4 PPGRTHTWFLLQSLEDLDTSLRKLNSRLFVVRG----QPADVFPRLFKEWGVTRLTFEYD 59 Query: 112 YEINEVRRDKLLEKRLQH-RVICKSFDDSVLLPPGSILNHALQ-MYKVYTPFRKALIQNL 169 E RD + K + V + + L I+ Q Y F+ + + Sbjct: 60 SEPFGKERDAAIMKMAKEAGVEVVTENSHTLYDLDRIIELNGQKPPLTYKRFQAIISRME 119 Query: 170 VQADLRSL-------PVPAIRLTGPVTPSNIPRFFDYPF--QAIDPM-FPIGEQNALHIL 219 + L A +P + F + + P + GE AL L Sbjct: 120 LPKKPVGLVTSQQMESCRAEIQENHDETYGVPSLEELGFPTEGLGPAVWQGGETEALARL 179 Query: 220 RKFCKEKVYYYVEQRDIPAIQGT----SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPK 275 K + K + +R + LSPYL G LS R + RL + + + + Sbjct: 180 DKHLERKAWVANYERPRMNANSLLASPTGLSPYLRFGCLSCRLFYYRLWDLYKKVK-RNS 238 Query: 276 SGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPI 335 + S +L+WREF+ P + P +I W+++ L W +G TGFP Sbjct: 239 TPPLSLFGQLLWREFFYTAATNNPRFDRMEG-NPICIQIPWDRNPEALAKWAEGKTGFPW 297 Query: 336 IDAAMRQLNTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQW 394 IDA M QL GW+H+ R A FL + DL V W G F LLD D + N G W W Sbjct: 298 IDAIMTQLRQEGWIHHLARHAVACFLTRGDLWVSWESGVRVFDELLLDADFSVNAGSWMW 357 Query: 395 AASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLD------ 448 S +F + P G+R DP G +IR +LP+L P++YI+ P + + Sbjct: 358 -LSCSAFFQQFFHCYCPVGFGRRTDPSGDYIRRYLPKLKAFPSRYIYEPWNAPESIQKAA 416 Query: 449 KNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQ 480 K + ++YP PIV+H + + + +Q Sbjct: 417 KCIIGVDYPRPIVNHAETSRLNIERMKQIYQQ 448 >gi|85704991|ref|ZP_01036091.1| Deoxyribodipyrimidine photolyase [Roseovarius sp. 217] gi|85670313|gb|EAQ25174.1| Deoxyribodipyrimidine photolyase [Roseovarius sp. 217] Length = 528 Score = 310 bits (793), Expect = 5e-82, Method: Composition-based stats. Identities = 110/477 (23%), Positives = 184/477 (38%), Gaps = 25/477 (5%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 ++W + DLR+ D+ AL A +I ++I PE W + S RQ FI L + Sbjct: 36 PVILWFKRDLRVQDHPALSHAARLG--PIIPLYIVEPEAWAEPDASERQYAFICECLESL 93 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYE-INEVRRDKLLEKRL 127 + L+ G+ D++ L++ Q V L + + + RD+ + + Sbjct: 94 RSDLAALGLSLVLR----VGDAVTVLEALRADQGVAHLVSHEETGNLWSYARDRKVAEWA 149 Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187 + + + P S + L + R +++ V ++ A+ Sbjct: 150 RGQGV------RWHEMPQSGVVRRLSSRDAWQGARDRVMRAPVLGAVQGARGAAVASDDL 203 Query: 188 VTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIP--AIQGTSQL 245 +P + P + G + L F + Y P + S++ Sbjct: 204 PSPEALGLMEACPLR-----QKGGRGAGVRALTSFVSTRGESYQRAMSSPLHGARACSRI 258 Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305 SP+L+ G LS R+ S+ L WR+ + + P + + Sbjct: 259 SPHLAFGTLSLREAVQAGAAAPTGRGPDWARSMRSFQARLAWRDHFMQKLEDEPEIER-R 317 Query: 306 PFIPWTEKIEWN-KDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364 P E + D+ L AW +G TG P +DA MR L GW++ R+R + + Sbjct: 318 CLHPAYEGLRPRVADAVRLAAWSKGETGLPFVDACMRSLRATGWLNFRMRSMLMAVASYH 377 Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424 L +DWR D + + Q +G + RI+NP QG DP G F Sbjct: 378 LWLDWRSTGPVLARAFTDYEPGIHWPQVQMQ--SGTTGMNTIRIYNPVKQGLDQDPSGEF 435 Query: 425 IRHWLPELNNVPTQYIHAPHSWLDKND-LSLNYPLPIVDHKKACHHTLNQYYAAKKQ 480 R WLPEL +VP Y+ P +W + L YP PIVD +A +A ++ Sbjct: 436 TRRWLPELAHVPDAYLQRPWAWSEAEALLGRGYPAPIVDPVEAARVAREAVWACRRA 492 >gi|88807683|ref|ZP_01123195.1| Deoxyribodipyrimidine photolyase [Synechococcus sp. WH 7805] gi|88788897|gb|EAR20052.1| Deoxyribodipyrimidine photolyase [Synechococcus sp. WH 7805] Length = 493 Score = 310 bits (793), Expect = 5e-82, Method: Composition-based stats. Identities = 118/475 (24%), Positives = 193/475 (40%), Gaps = 34/475 (7%) Query: 10 HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69 LVW + DLR+ D++ L A V+ ++I PE W Q SARQ F SL +Q Sbjct: 6 QLVWFKRDLRLVDHQPLARALARG--PVLPLYIVEPELWSQPDCSARQWAFCRESLQDLQ 63 Query: 70 KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEV-RRDKLLEKRLQ 128 ++ ++ G D+++ L+ Q ++ L+ + + RD+ + + Sbjct: 64 EAFAEVGQPLIIRSG----DAVDVLERARRQLGISALWSHEETGNAWTFARDRRVAAWAR 119 Query: 129 HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188 R I LP ++ + + + + + A P+ I Sbjct: 120 ERGIPWHE-----LPQFGVVRRLQTRRGWARRWEERMGEAITPAPTGLTPLSGIAPGDLP 174 Query: 189 TPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIP--AIQGTSQLS 246 T + D G + L L F +V Y P A +G S+LS Sbjct: 175 TNDALALQAD----PCPYRQRGGRRLGLQELNDFLAHRVQGYCRSISSPNLAFKGCSRLS 230 Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP 306 Y++ G LS R+ R +E G S+ + L W + + P + + Sbjct: 231 AYITWGCLSMREVLQRSREFQ-------GRGVSSFSSRLHWHCHFIQKLEDQPPIEW-ED 282 Query: 307 FIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLL 366 F P+ I + D AW +G TG P +DA MR L GW++ R+R + SF +L Sbjct: 283 FHPFMRGIR-SLDDARFAAWAEGQTGVPFVDACMRALRAHGWINFRMRAMLMSFASYNLW 341 Query: 367 VDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIR 426 + WR + Q +D + + Q +G+ S+ RI+NP QG DP G FIR Sbjct: 342 LPWRDTGLHLARQFVDYEPGIHWSQCQMQ--SGSTSINTIRIYNPIKQGHDHDPDGAFIR 399 Query: 427 HWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481 W PEL +VP ++H P S L +PIVD + + + ++ + Sbjct: 400 RWCPELEDVPAVHLHEPWSLLGAPRS-----MPIVDCAISAREAKERIFEIRRSA 449 >gi|78486463|ref|YP_392388.1| deoxyribodipyrimidine photolyase [Thiomicrospira crunogena XCL-2] gi|78364749|gb|ABB42714.1| Deoxyribodipyrimidine photo-lyase type I [Thiomicrospira crunogena XCL-2] Length = 479 Score = 310 bits (793), Expect = 5e-82, Method: Composition-based stats. Identities = 155/486 (31%), Positives = 234/486 (48%), Gaps = 32/486 (6%) Query: 10 HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69 LVWL+ +LRI + AL AA SD ++A F PEQ I A + ++ SL Q+Q Sbjct: 3 TLVWLQRELRINHHPALEAAMAASDDIIVAYF-HDPEQT----IGAANTVWLANSLQQLQ 57 Query: 70 KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYE-INEVRRDKLLEKRLQ 128 + + + + L+ ++ ++FY Q + + + L + Sbjct: 58 QDFKTRHGRLWCLEG----IFEQQLEQVIQTHQIEQVFYTFQLGHPFKAMQQQALNVCQR 113 Query: 129 HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG-- 186 +V ++F+ L +LN + Q YKV+TPF L + L + + S P+ + T Sbjct: 114 CQVPLRAFETENWLHYNQLLNQSGQPYKVFTPFYNTLSRKLSELEPFSDPIDTLEKTART 173 Query: 187 -------PVTPSNIPRFFDYPF-QAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPA 238 P ++ + P+ + I + +GE A F E + Y + RD PA Sbjct: 174 VCQSGQDQNLPQSLNQILARPWARKIMQHWQVGEHKAWSKFETFITEGLANYEQDRDFPA 233 Query: 239 IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFY 298 I GTSQLSP+L G L R L + I ++ WL +L WREF R ++ + Sbjct: 234 IDGTSQLSPHLHFGELHSRAIVFELLSLETEPTIANQA-IRVWLRQLAWREFARAILWHF 292 Query: 299 PSVCMGKPFIPWTEKI------EWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNR 352 P PF E + ++ S QAW +G TG PIIDA M+QL GWMHNR Sbjct: 293 PHTETH-PFQAKFETFYRPLAEDDSESSKNYQAWCEGRTGVPIIDAGMKQLWETGWMHNR 351 Query: 353 LRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPT 412 +RM+ AS+L K+ +DWR G ++F L+D D A+N GWQW A G D+ PY+R+FNP Sbjct: 352 VRMLVASWLTKNADIDWRAGAQWFNDTLVDADPANNTLGWQWVAGCGVDAAPYYRLFNPV 411 Query: 413 IQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLN 472 Q ++FD G ++R WLPEL ++IHAP PI+D ++ H L+ Sbjct: 412 RQSEKFDANGQYLRQWLPELKTYSNKHIHAPWLIAPNEKHFC----PIIDLTESRQHHLD 467 Query: 473 QYYAAK 478 + K Sbjct: 468 KVATLK 473 >gi|332836252|ref|XP_003313049.1| PREDICTED: cryptochrome-2 isoform 2 [Pan troglodytes] Length = 532 Score = 309 bits (792), Expect = 6e-82, Method: Composition-based stats. Identities = 110/452 (24%), Positives = 176/452 (38%), Gaps = 30/452 (6%) Query: 52 GISARQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQ 111 + F+ SL + SL + + + + VT+L + Sbjct: 4 PPGRTHTWFLLQSLEDLDTSLRKLNSRLFVVRG----QPADVFPRLFKEWGVTRLTFEYD 59 Query: 112 YEINEVRRDKLLEKRLQH-RVICKSFDDSVLLPPGSILNHALQ-MYKVYTPFRKALIQNL 169 E RD + K + V + + L I+ Q Y F+ + + Sbjct: 60 SEPFGKERDAAIMKMAKEAGVEVVTENSHTLYDLDRIIELNGQKPPLTYKRFQAIISRME 119 Query: 170 VQADL-------RSLPVPAIRLTGPVTPSNIPRFFDYPF--QAIDPM-FPIGEQNALHIL 219 + + A +P + F + + P + GE AL L Sbjct: 120 LPKKPVGSVTSQQMESCRAEIQENHDETYGVPSLEELGFPTEGLGPAVWQGGETEALARL 179 Query: 220 RKFCKEKVYYYVEQRDIPAIQGT----SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPK 275 K + K + +R + LSPYL G LS R + RL + + + + Sbjct: 180 DKHLERKAWVANYERPRMNANSLLASPTGLSPYLRFGCLSCRLFYYRLWDLYKKVK-RNS 238 Query: 276 SGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPI 335 + S +L+WREF+ P + P +I W+++ L W +G TGFP Sbjct: 239 TPPLSLFGQLLWREFFYTAATNNPRFDRMEG-NPICIQIPWDRNPEALAKWAEGKTGFPW 297 Query: 336 IDAAMRQLNTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQW 394 IDA M QL GW+H+ R A FL + DL V W G F LLD D + N G W W Sbjct: 298 IDAIMTQLRQEGWIHHLARHAVACFLTRGDLWVSWESGVRVFDELLLDADFSVNAGSWMW 357 Query: 395 AASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLD------ 448 S +F + P G+R DP G +IR +LP+L P++YI+ P + + Sbjct: 358 -LSCSAFFQQFFHCYCPVGFGRRTDPSGDYIRRYLPKLKAFPSRYIYEPWNAPESIQKAA 416 Query: 449 KNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQ 480 K + ++YP PIV+H + + + +Q Sbjct: 417 KCIIGVDYPRPIVNHAETSRLNIERMKQIYQQ 448 >gi|283476381|emb|CAY26038.1| chryptochrome 1 [Acyrthosiphon pisum] Length = 553 Score = 309 bits (792), Expect = 6e-82, Method: Composition-based stats. Identities = 122/508 (24%), Positives = 203/508 (39%), Gaps = 42/508 (8%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M+V + W RN LR+ DN AL A HN+ K+I +FI + F+ SL+ Sbjct: 1 MTVAVHWFRNGLRLHDNPALIEA-HNNAEKLITLFIFDETTFNPKWYGYNPMRFLLESLI 59 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 + +L+ G Q + + + + + Y + RD+ ++ Sbjct: 60 DLNNNLALVGGRLYILQG----NPVNIFKMIKEKIGLHFITYEQDCAHLGRTRDEKVKSF 115 Query: 127 LQHR-VICKSFDDSVLLPPGSILNHALQ-MYKVYTPFRKALIQNLVQA------------ 172 + C L P SI+ + F+ Q Sbjct: 116 CDENDIKCIETVSHTLWNPKSIIEKNGGVPPFTFKQFQNTAKQIGHPPSPVGNVDWLSVI 175 Query: 173 --DLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPM-FPIGEQNALHILRKFCKEKVYY 229 +L + + TP + + P + GE AL L++ + + Sbjct: 176 FEELPASIQDEFKNLHNPTPETFGIYPEVPENLTSTYRWYGGETRALEQLKERLEYEKEA 235 Query: 230 YVEQRDIPAIQGT------SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLN 283 +V +P S LS L G LS R+ + L + F++ +S + Sbjct: 236 FVNGFYLPNQVNPDLLSPPSSLSAALRYGCLSIRKFYWELTKLFINKFEGDLLPMYSVTS 295 Query: 284 ELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWN-----KDSHLLQAWKQGYTGFPIIDA 338 +LIWR+++ + + + P I WN ++ +L+ WK G TG+P IDA Sbjct: 296 QLIWRDYFYTMSIDNKNFGQIED-NPACISIPWNDIKIPENKKMLECWKTGKTGYPFIDA 354 Query: 339 AMRQLNTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAAS 397 MRQL GW+H+ +R ASFL + DL + W G +FM LLD D + +G W W +S Sbjct: 355 GMRQLMQEGWIHHVVRNSLASFLTRGDLWISWVEGLNHFMKYLLDADFSVCSGNWIWVSS 414 Query: 398 TGNDS-VPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDK------N 450 + + + P G R DP G +I+ ++PEL N+P Q+++ P + Sbjct: 415 STFEQLLDCPLCVCPVSYGLRLDPSGEYIKRYVPELKNMPAQFLYEPWKCPESVQKQVGC 474 Query: 451 DLSLNYPLPIVDHKKACHHTLNQYYAAK 478 + +YP IVDH A + A + Sbjct: 475 IIGKDYPNCIVDHTIASKGNRKKMLALR 502 >gi|110667265|ref|YP_657076.1| deoxyribodipyrimidine photolyase [Haloquadratum walsbyi DSM 16790] gi|109625012|emb|CAJ51427.1| deoxyribodipyrimidine photolyase [Haloquadratum walsbyi DSM 16790] Length = 463 Score = 309 bits (792), Expect = 6e-82, Method: Composition-based stats. Identities = 138/479 (28%), Positives = 214/479 (44%), Gaps = 30/479 (6%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 + L W R D R+ DN L AA V+ V++ + + I RQ F ++ ++ Sbjct: 1 MRLFWHRRDPRLRDNAGLAAAARADSESVLPVYVYDSDLFGA--IGERQQAFWMHAVREL 58 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128 +++ ++ D + + + + + N+ Y R + + L Sbjct: 59 KEAYRERESDLIVRAGDPGD----IIPALAEEYDIDGVHCNQHYRPGRQSRRERVASELD 114 Query: 129 HRVICKSF-DDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPA-IRLTG 186 I D VL+ PG + Y ++ F ++ S P + +T Sbjct: 115 KSGIAFDVRTDHVLVDPGRLDAS----YPNHSQFHNDWEDVPKRSAYDSPPAETLVDITD 170 Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQG----- 241 T D P P G + A L +FC +Y Y + RD A Sbjct: 171 SKTVPVPTVEIDLP--------PSGYEAARDRLDRFCDRGIYDYNDTRDDLAQAAEKPTT 222 Query: 242 -TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPS 300 S++SPYLS G++ R+ W+ + + + A + EL WRE HL+ + P Sbjct: 223 AVSRMSPYLSGGMIGIREVWDAASSVYEAVHGNERRNADKYRYELSWREQNYHLLYYNPD 282 Query: 301 VCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASF 360 + + + +I+W D ++W G TG+P++DA MRQLN G++HNR R + ASF Sbjct: 283 LAVSN-YKSIPNEIQWRDDDEAFKSWALGQTGYPLVDAGMRQLNREGYIHNRPRQVVASF 341 Query: 361 LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDP 420 L K LLVDWR G YF QL+D D ASN+G WQW ASTG DSV RIF+P Q ++D Sbjct: 342 LTKHLLVDWRRGARYFTKQLIDHDYASNHGSWQWIASTGTDSV-DVRIFDPVSQLSKYDD 400 Query: 421 QGTFIRHWLPELNNVPTQYIHAPH--SWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477 F+R ++PEL++ PT+ I S D+ + YP PIV + + A Sbjct: 401 GANFVREYVPELSDTPTEKIIEWPTLSPGDRAQFAPEYPDPIVGRNEGYERAQQTFEKA 459 >gi|326433957|gb|EGD79527.1| cryptochrome DASH [Salpingoeca sp. ATCC 50818] Length = 552 Score = 309 bits (792), Expect = 6e-82, Method: Composition-based stats. Identities = 131/493 (26%), Positives = 218/493 (44%), Gaps = 41/493 (8%) Query: 1 MKATTAMSV--HLVWLR-NDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQ------- 50 M ++++ +V +VW R +DLRI D++ L A S V+ V+ P Q Sbjct: 1 MSSSSSKAVRPAVVWFRGSDLRIHDHEPLLEAAKASKGHVVPVYCFDPRQVGPAAKTRCG 60 Query: 51 --HGISARQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFY 108 +++ FI + ++++L + G + E + T++F Sbjct: 61 QFPKCGWQRTRFIVECVEDLRRNLQRLGSNLVVR----VGEPEEVIPDIVSITGATEVFG 116 Query: 109 NRQYEINEVRRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHAL--QMYKVYTPFRKALI 166 ++ E + L KRL + + + L + + V++ FRKA Sbjct: 117 QKEVCSEETGVEHRLAKRLSVPLTLR-WGAITLCHRDDLPYERSCSDLPGVFSQFRKAAE 175 Query: 167 QNLVQADLRSLPVPAIRLTGPVT------PSNIPRFFDYPFQAIDP---MFPIGEQNALH 217 + R P L P+ P + P +A + F GE A Sbjct: 176 ACVPIRPPRPPPPSLQPLPQPIAGDPGHVPPVTQLSPNAPAKADERGVLTFVGGETVART 235 Query: 218 ILRKFCKE--KVYYYVEQRD-IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKP 274 ++ + + + Y + R+ + +S+ SP+L+ G +S R + +K + + Sbjct: 236 RVKHYLWDTDCIATYKDTRNGLVGADYSSKFSPWLAHGCVSARWIHSEVKRYERERV--K 293 Query: 275 KSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFP 334 + + + EL+WR+++R + + + K + I W L AW++G TGFP Sbjct: 294 NNSTYWLVFELLWRDYFRFVALQHGTAIF-KEGGVQRKGIAWRHSPLDLSAWQEGRTGFP 352 Query: 335 IIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQW 394 +DA MR+L G+M NR R ASFL KDLL+DWR+G E+F S L+D D +N G W + Sbjct: 353 FVDANMRELAATGFMSNRGRQNVASFLTKDLLIDWRLGAEWFESLLIDHDPCANYGNWNY 412 Query: 395 AASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIH----APHSWLDKN 450 AA GND R FN Q K +DP ++ W+PEL ++P + H APH L+ Sbjct: 413 AAGIGNDPRQ-GRHFNVIRQAKTYDPAAEYVHLWVPELKHLPAPFAHTPYQAPHGELEAA 471 Query: 451 D--LSLNYPLPIV 461 L +YP PIV Sbjct: 472 GVALEKSYPRPIV 484 >gi|157104635|ref|XP_001648498.1| DNA photolyase [Aedes aegypti] gi|122106526|sp|Q17DK5|CRY1_AEDAE RecName: Full=Cryptochrome-1 gi|108880271|gb|EAT44496.1| DNA photolyase [Aedes aegypti] Length = 545 Score = 309 bits (792), Expect = 7e-82, Method: Composition-based stats. Identities = 117/518 (22%), Positives = 205/518 (39%), Gaps = 47/518 (9%) Query: 7 MSVH-LVWLRNDLRITDNKALYAACHNSDA-----KVIAVFIATPEQWRQHGISARQSHF 60 M+V+ ++W R+ LR+ DN +L A N ++ +FI E + + F Sbjct: 1 MTVNNILWFRHGLRLHDNPSLLEALRNDGTGSESVRLYPIFIFDGESAGTKLVGFNRMKF 60 Query: 61 IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120 + SL + + L + G + +++ + + + KL + + E RD Sbjct: 61 LLESLADLDRQLREIGGQLYVFKG----NAVNVMRRLFEELNIRKLCFEQDCEPIWKARD 116 Query: 121 KLLEKRLQH-RVICKSFDDSVLLPPGSI-LNHALQMYKVYTPFRKALIQNLVQADLRSLP 178 ++ + V C L P I + Y F + + P Sbjct: 117 DAIQNLCRMMDVKCVEKVSHTLWDPQQIIRTNGGIPPLTYQMFLHTVDIIGKPPRPVAAP 176 Query: 179 VPAIRLTGPV----------------TPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKF 222 G + +P + +++ + GE AL L Sbjct: 177 SFEFVEFGSIPSILAQEVKLQQVRNLSPEDFGIYYEGNPDISHQQWMGGETKALECLGHR 236 Query: 223 CKEKVYYYVEQRDIPAIQGT------SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPK- 275 K++ ++ +P + +S L G LS R + + + + + + Sbjct: 237 LKQEEEAFLGGYFLPTQAKPEFLVPPTSMSAALRFGCLSVRMFYWCVHDLYEKVQANNQY 296 Query: 276 --SGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEW-NKDSHLLQAWKQGYTG 332 G +LIWRE++ + P + P I W L WK+G TG Sbjct: 297 RNPGGQHITGQLIWREYFYTMSVHNPHYAEMEA-NPICLNIPWYEPKDDSLDRWKEGRTG 355 Query: 333 FPIIDAAMRQLNTIGWMHNRLRMITASFLVKD-LLVDWRIGEEYFMSQLLDGDLASNNGG 391 FP+IDAAMRQL GW+H+ LR ITA+FL + L + W G ++F+ LLD D + G Sbjct: 356 FPMIDAAMRQLLAEGWLHHILRNITATFLTRGALWISWEAGVQHFLKYLLDADWSVCAGN 415 Query: 392 WQWAASTGNDS-VPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDK- 449 W W +S+ + + +P +R DP+G ++R +LPEL N+PT Y+H P Sbjct: 416 WMWVSSSAFEKLLDSSSCTSPIALARRLDPKGEYVRRYLPELKNLPTLYVHEPWKAPLDV 475 Query: 450 -----NDLSLNYPLPIVDHKKACHHTLNQYYAAKKQSL 482 + +YP P++D A N + +++ + Sbjct: 476 QKECGCIVGRDYPAPMIDLAAASRANANTMNSIRQKLM 513 >gi|226508658|ref|NP_001146707.1| hypothetical protein LOC100280309 [Zea mays] gi|219888435|gb|ACL54592.1| unknown [Zea mays] Length = 550 Score = 309 bits (791), Expect = 7e-82, Method: Composition-based stats. Identities = 130/472 (27%), Positives = 213/472 (45%), Gaps = 43/472 (9%) Query: 6 AMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATP-------EQWRQHGISARQS 58 + V +VW RNDLR+ DN+AL A S+A V+ V+ P + A ++ Sbjct: 49 GVGVAVVWFRNDLRVIDNEALLRAWAASEA-VLPVYCVDPRVFAGSTHYFGFPKKGALRA 107 Query: 59 HFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVR 118 F+ L +++SL +KG+ E L S ++ +++ E+ Sbjct: 108 QFLIECLGDLKQSLRKKGLDLLVRHGKPE----EILPSIAKAVSAHTIYAHKETCSEELL 163 Query: 119 RDKLLEKRLQHRVICKS---------------FDDSVLLPPGSILNHALQMYKVYTPFRK 163 ++L+ K L+ I + + + + + VYT FRK Sbjct: 164 VERLVSKGLEQVQIAQGGASVPKRPLNPRLQLIWGATMYHIDDLPFPVSSLPDVYTQFRK 223 Query: 164 ALIQNLVQADLRSLP-----VPAIRLTGPVTPSNIPRFFDYPFQAIDP----MFPIGEQN 214 A+ + LP P+ + +P F GE Sbjct: 224 AVESKCSVRNCAKLPTSLGPPPSSSIDEIGGWGTVPTLESLGPSVTKSEKGMHFIGGESA 283 Query: 215 ALHILRKFC--KEKVYYYVEQRD-IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLL 271 AL + ++ K+++ Y R+ + +++ SP+L+ G LSPR +K + Sbjct: 284 ALGRVHEYFWKKDQLKDYKVTRNGMLGPDYSTKFSPWLASGSLSPRYICEEVKRYEKQRV 343 Query: 272 IKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYT 331 + L ELIWR+++R L A Y + P +W++D L ++W+ G T Sbjct: 344 --ANDSTYWVLFELIWRDYFRFLSAKYGNAIFHLGG-PRKVVSKWSQDQALFESWRDGRT 400 Query: 332 GFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGG 391 G+P+IDA MR+L+ G+M NR R I SFLV+D+ VDWR+G E+F + LLD D ASN G Sbjct: 401 GYPLIDANMRELSATGYMSNRGRQIVCSFLVRDMGVDWRMGAEWFETCLLDYDPASNYGN 460 Query: 392 WQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAP 443 W + A GND R F+ Q K +DP+G ++ +WLPEL ++ + + P Sbjct: 461 WTYGAGVGNDPRE-DRYFSIPKQAKSYDPEGEYVAYWLPELRSLAKERRNFP 511 >gi|156383457|ref|XP_001632850.1| predicted protein [Nematostella vectensis] gi|156219912|gb|EDO40787.1| predicted protein [Nematostella vectensis] Length = 492 Score = 308 bits (790), Expect = 9e-82, Method: Composition-based stats. Identities = 115/481 (23%), Positives = 191/481 (39%), Gaps = 32/481 (6%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 + W R DLR+ DN +L A+ N +++ E R ISA + +F+ L + Sbjct: 3 TSVHWFRKDLRLHDNPSLLASLDNCSTF-FPIYVLDMESARASKISANRWNFLCECLEAL 61 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128 + L G + +I+ L + V +L + R+ E +RD +++ + Sbjct: 62 DRQLRVLGSRLFVIRG----RAIDVLPRLFHEWSVNRLTFERESEPAGRQRDTVIQMLAE 117 Query: 129 H-RVICKSFDDSVLLPPGSIL-NHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 + V + +L +L + ++ + + L V Sbjct: 118 NANVQLLQHNAHLLYDTDEVLETNDGKLPMTFDE-MAKTAEQLGPPCPPCQTVDKTVFGA 176 Query: 187 PVTPSNI--------PRFFDYPFQAIDPM-----FPIGEQNALHILRKFCKEKVYYYVEQ 233 +TP + P+ D+ + + + GE A+ L ++K + Sbjct: 177 CITPVGLDHAEKYGVPQLSDFGGKELGRATAKLFWKGGELEAMRRLNLALQKKKFIKPPL 236 Query: 234 RDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRH 293 + LSPY+ G LSP +RL E+ + + L+WREF+ Sbjct: 237 SADTLLASDRALSPYMRFGCLSPCYILDRLTTEYQRTM--GSKPPETLYTNLLWREFFFA 294 Query: 294 LMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRL 353 + P P +I W + L WKQG TGFP IDA MRQL GW+H+ Sbjct: 295 TASTNPDHHRMMG-NPLALQIPWEQHPEALSLWKQGKTGFPWIDAIMRQLREEGWIHHLA 353 Query: 354 RMITASFLVKD-LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPT 412 R FL + L V W G + F LD + + N G W W S + + P Sbjct: 354 RQAVGCFLTRGCLWVSWEEGFKAFDELQLDAEWSLNAGNWLW-LSCSSYVHGAVPWYCPV 412 Query: 413 IQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDK------NDLSLNYPLPIVDHKKA 466 GK+ DP G +IR ++PEL +PT+++H P + +YP P+V+H + Sbjct: 413 EVGKQVDPTGEYIRTFVPELRRLPTKFLHEPWKAPSSVQREAGCIVGKDYPQPMVNHLER 472 Query: 467 C 467 Sbjct: 473 R 473 >gi|255574119|ref|XP_002527975.1| DNA photolyase, putative [Ricinus communis] gi|223532601|gb|EEF34387.1| DNA photolyase, putative [Ricinus communis] Length = 576 Score = 308 bits (790), Expect = 9e-82, Method: Composition-based stats. Identities = 131/478 (27%), Positives = 221/478 (46%), Gaps = 31/478 (6%) Query: 4 TTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHG------ISARQ 57 + +VW RNDLRI DN++L A +SD+ ++ V+ P + A + Sbjct: 79 RKGKGICIVWFRNDLRILDNESLLQAWLSSDS-LLPVYCVDPRLFHTTHHFAFPKTGALR 137 Query: 58 SHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEV 117 + F+ L ++ +L ++G+ D L S ++ ++ E+ Sbjct: 138 AQFLIECLADLKNNLMKRGLNLFIRHGKPED----ILPSLARAFSAHTVYAQKETCSEEL 193 Query: 118 RRDKLLEKRLQ------------HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKAL 165 ++L+ K LQ + + S + + +A + VYT F K + Sbjct: 194 IVERLVSKALQRVNLPPSPDKFTSQPKLQLVWGSTMYHIDDLPFNANNIPDVYTQFPKCV 253 Query: 166 IQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPM-FPIGEQNALHILRKFCK 224 I+ ++ + P P + G V + + I M F GE AL + ++ Sbjct: 254 IRGCLKIPVTLAPSPPVDDWGCVPSLDQLGLQPQKARFIKGMRFLGGETAALSRVYEYFW 313 Query: 225 EKV--YYYVEQRD-IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSW 281 +K Y E R+ + +++ SP+L+ G LSPR + +K + + + Sbjct: 314 KKDLLKIYKETRNGMLGPDYSTKFSPWLASGSLSPRFIYEDVKRYENER--QANDSTYWV 371 Query: 282 LNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMR 341 L ELIWR+++R L Y + + E+ W++D L ++WK G TG+P+IDA M+ Sbjct: 372 LFELIWRDYFRFLSVKYGNSLFHLGGVRKVER-SWSQDQKLFESWKDGCTGYPLIDANMK 430 Query: 342 QLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGND 401 +L+T G+M NR R I SFLV+D+ VDWR+G E+F + LLD D SN G W + A GND Sbjct: 431 ELSTTGFMSNRGRQIVCSFLVRDMGVDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGND 490 Query: 402 SVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLP 459 R F+ Q + +DP+G ++ +WLP+L + H P + + L Y P Sbjct: 491 PRE-DRYFSIPKQAQIYDPEGEYVAYWLPQLQKLEKDRRHFPGKSYIEQIVPLKYGNP 547 >gi|254227310|ref|ZP_04920742.1| Deoxyribodipyrimidine photolyase [Vibrio sp. Ex25] gi|262396423|ref|YP_003288276.1| deoxyribodipyrimidine photolyase/cryptochrome family protein [Vibrio sp. Ex25] gi|151939922|gb|EDN58748.1| Deoxyribodipyrimidine photolyase [Vibrio sp. Ex25] gi|262340017|gb|ACY53811.1| deoxyribodipyrimidine photolyase/cryptochrome family protein [Vibrio sp. Ex25] Length = 493 Score = 308 bits (790), Expect = 1e-81, Method: Composition-based stats. Identities = 115/487 (23%), Positives = 199/487 (40%), Gaps = 32/487 (6%) Query: 8 SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67 ++++VWL+ DLR+TD++ L A +S + ++I P S R F++ SL Sbjct: 3 TINVVWLKRDLRLTDHQPLTQAL-SSKHPTVLLYIVEPLLLNNPHYSERHWRFVWQSLQD 61 Query: 68 VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEIN-EVRRDKLLEKR 126 + ++L G F D++ S +Q ++ +F +++ +N RDK + Sbjct: 62 MNETLKAYGHRITVL----FGDALACFQSIQMQYQINAVFSHQEIGLNCTFERDKQIADW 117 Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 L + I G+++ A + + ++ DL++ + Sbjct: 118 LHEQNITW-----FEFEHGAVIRGAKDRQGWDKHWDLVMRSSISPLDLQT---NLLHSLD 169 Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIP--AIQGTSQ 244 + M G Q A L F + Y P + ++ Sbjct: 170 AESLGCAFSPPSSWLSKCKGMQTGGSQLAWKTLEDFFNRRGRDYYRSISSPTASRTACTR 229 Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPK----SGAFSWLNELIWREFYRHLMAFYPS 300 LSPYL+ G +S R+ + L + + + + S W I + + M FY Sbjct: 230 LSPYLAWGNISLREVYQYLLKHWQVVGFRRSLIALSSRLHWHCHFIQKFESEYDMEFY-- 287 Query: 301 VCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASF 360 C+ + + ++ D L AWK GYTG P+IDA MR L+ G+++ R+R + SF Sbjct: 288 -CVNRAYESLIKQSS-TFDEEKLAAWKSGYTGIPLIDACMRCLHQTGYINFRMRAMLVSF 345 Query: 361 LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDP 420 L + +DWR G + LD + + +Q G RI+NP Q + DP Sbjct: 346 LTHHMNMDWRTGVTHLAQLFLDFEPGIHYPQFQMQ--AGVTGTNTIRIYNPVKQAQEHDP 403 Query: 421 QGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLN------YPLPIVDHKKACHHTLNQY 474 G FI W+PEL VPT + P + + + Y PIVD A + Sbjct: 404 DGAFIYKWVPELQMVPTPLLFEPWTMTQMETVMYHLKPDSRYLAPIVDLNSAAKDARERL 463 Query: 475 YAAKKQS 481 +A +K++ Sbjct: 464 WAWRKRA 470 >gi|163756026|ref|ZP_02163142.1| putative deoxyribodipyrimidine photolyase [Kordia algicida OT-1] gi|161323900|gb|EDP95233.1| putative deoxyribodipyrimidine photolyase [Kordia algicida OT-1] Length = 495 Score = 308 bits (789), Expect = 1e-81, Method: Composition-based stats. Identities = 106/495 (21%), Positives = 191/495 (38%), Gaps = 32/495 (6%) Query: 1 MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHF 60 M + +++V + DLR+ DN+A++ A ++ +F+ S R +F Sbjct: 1 MNTQNKIEINVVLFKRDLRLQDNEAIHNALSTGKKTLL-LFVFEDILLNDPHYSERHWNF 59 Query: 61 IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVR-R 119 I SL+ + SL + + L ++T LF +++ I R Sbjct: 60 IKESLIDLNNSLIAYNSEILIVRS----NINRTLQIIQETYKITHLFSHQETGIKVTYDR 115 Query: 120 DKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPV 179 DK+L++ L + +I + + + + +N + L S Sbjct: 116 DKMLKRFLANNMITWVENIN-----NGVFRGLQDRTDWIEKW-----ENFMNQPLLSFLP 165 Query: 180 PAIRLTGPVTPSNIPRFFDYPFQAIDP---MFPIGEQNALHILRKFCKEKVYYYVEQRDI 236 +L ++ FF P +P G AL F +++ Y Sbjct: 166 KKDQLFTKKEVQHLASFFHVPSLETNPDTLFQKGGTTMALKYKNTFFRDRGKNYNHHISK 225 Query: 237 P--AIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHL 294 P A + S+LSPYL+ G LS R+ + + S+ + L W+ + Sbjct: 226 PLLARRSCSRLSPYLAWGNLSVREVIQETTRCIEQNIYPKQ--MESFGSRLRWQAHFIQK 283 Query: 295 MAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLR 354 K++ ++AWK G TG+P++DA MR L G+++ R+R Sbjct: 284 FE-MEDEMEFVSINKGYRKLKKRVSERYIEAWKNGMTGYPLVDACMRCLKETGYLNFRMR 342 Query: 355 MITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQ 414 + SF +L W+ LD + + Q G + R++NPT Sbjct: 343 ALVVSFFTHNLWQPWQKATVILSQYFLDFEPGIHFPQIQMQ--AGETGINMLRMYNPTKN 400 Query: 415 GKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND------LSLNYPLPIVDHKKACH 468 G DP+G FI+ W+PEL + T ++H P L +YP PIV+ ++ Sbjct: 401 GIAHDPEGIFIKKWVPELAELDTAFVHEPSKMTPMEQQMANFILGKDYPKPIVNLQETRK 460 Query: 469 HTLNQYYAAKKQSLL 483 H + + K ++ + Sbjct: 461 HASDILWNMKDENTV 475 >gi|254480682|ref|ZP_05093929.1| FAD binding domain of DNA photolyase protein [marine gamma proteobacterium HTCC2148] gi|214039265|gb|EEB79925.1| FAD binding domain of DNA photolyase protein [marine gamma proteobacterium HTCC2148] Length = 495 Score = 308 bits (789), Expect = 1e-81, Method: Composition-based stats. Identities = 107/482 (22%), Positives = 187/482 (38%), Gaps = 20/482 (4%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 MSV +VWL+ DLR+ D++ L A +S V + P S R F+ SL Sbjct: 1 MSVSVVWLKRDLRLNDHQPLLRAL-SSGLPVFIFYCFEPMLLNDPRYSERHWRFVSQSLQ 59 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEV-RRDKLLEK 125 + + L Q Q D++ + ++ ++ + + ++ RD+ + Sbjct: 60 DMNRQLRQNRFRVLVFQS----DALPLFKLIHAESPISAVYSHEETGVDSTFGRDRSIAS 115 Query: 126 RLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185 L + I P + + + + Q ++ P Sbjct: 116 WLNNEGIAWHES-----PTNGVQRGRTDRKGWNRRWSEVMKMPQDQPVWDAVCAPPPLAG 170 Query: 186 GPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ--GTS 243 G + + + + + + + GE A +L F E+ +Y P S Sbjct: 171 GALGEALLRSPPEQWLRPVQDLQQGGETAATQVLDSFLTERGAHYERHISKPDKSQLHCS 230 Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCM 303 +LSP+L+ G +S RQ L+ + A + + L W + S+ Sbjct: 231 RLSPHLAWGNISIRQVSQALEARRPYAGWERSMNA--FESRLHWHCHFIQKFEMECSMEW 288 Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363 + +E + D AW++G TG+P+IDAAMR L G+++ R R + SF Sbjct: 289 -RDLNRGYLDVERSYDPAAQLAWREGRTGYPLIDAAMRCLQATGYVNFRCRAMLVSFFCH 347 Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423 L W + S LD + + Q G + RI+NP Q DP+G Sbjct: 348 LLWQPWHDAAVHLASLFLDFEPGIHYPQLQMQ--AGVTGINTVRIYNPIKQAIDHDPKGH 405 Query: 424 FIRHWLPELNNVPTQYIHAPH--SWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481 FIR W+PEL +P IH P + +++ LS +YP PI+D + + + + Sbjct: 406 FIRQWVPELRTMPEHLIHQPWNANPMERMLLSCDYPEPIIDCTSSYRRAREILWDLQHSN 465 Query: 482 LL 483 + Sbjct: 466 TV 467 >gi|296171175|ref|ZP_06852623.1| deoxyribodipyrimidine photolyase [Mycobacterium parascrofulaceum ATCC BAA-614] gi|295894311|gb|EFG74066.1| deoxyribodipyrimidine photolyase [Mycobacterium parascrofulaceum ATCC BAA-614] Length = 443 Score = 308 bits (789), Expect = 1e-81, Method: Composition-based stats. Identities = 135/458 (29%), Positives = 213/458 (46%), Gaps = 34/458 (7%) Query: 23 NKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQKSLSQKGIVFQYH 82 + AL AA N +V+A F+ P R+ ++ +L +++ L + +V Sbjct: 17 HPALVAAAQN--EQVLACFVLDPRLEAS--SGERRLQYLGDALRRLRSDLDGRLLV---- 68 Query: 83 QCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHRVICKSFDDSVLL 142 E + + + + + + RRD + L V + L+ Sbjct: 69 ---TRGLPHERIPRIVKEIGASSVHVSTDFAPFGRRRDDRVRAALGS-VPLVATGSPYLV 124 Query: 143 PPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQ 202 PG + Y+V+TPF + + ++ +S A + D P Sbjct: 125 SPGRVTKQDGTPYQVFTPFLRKWREVGWRSPAKSGAESAHWIDPDQVAIPQC---DIPDP 181 Query: 203 AIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNR 262 GE+ AL F + + Y RD P ++ TS++S +L G + PR Sbjct: 182 GATLDLAAGERAALFEWEAFVNDGLERYAADRDRPDLEATSRMSAHLKFGSIHPRTMVAD 241 Query: 263 LKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHL 322 L + GA ++L EL +R+FY ++ +P+ + + + I + + Sbjct: 242 L--------DLREPGAQAYLRELAFRDFYADVLHHWPASAW-RNWNHQFDGIRTDTGAEA 292 Query: 323 ---LQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQ 379 ++WK G TGFP++DA MRQL G++HNR+RMI ASFLVKDL + W+ G E+F+ Q Sbjct: 293 KRRFESWKAGETGFPLVDAGMRQLRETGFVHNRVRMIVASFLVKDLHLPWQWGAEWFLDQ 352 Query: 380 LLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQY 439 L+DGD+A+N GWQW A G D+ PYFR+FNPT Q +FDP G +IR W+PEL +V + Sbjct: 353 LVDGDMANNQHGWQWCAGCGTDAAPYFRVFNPTSQAAKFDPSGDYIRRWVPELRSVDDAH 412 Query: 440 IHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477 L K + YP PIVDH L +Y + Sbjct: 413 -------LRKGERPAGYPAPIVDHGAERAEALRRYQSI 443 >gi|254875029|ref|ZP_05247739.1| phrB, deoxyribodipyrimidine photolyase [Francisella tularensis subsp. tularensis MA00-2987] gi|254841028|gb|EET19464.1| phrB, deoxyribodipyrimidine photolyase [Francisella tularensis subsp. tularensis MA00-2987] Length = 355 Score = 308 bits (789), Expect = 1e-81, Method: Composition-based stats. Identities = 130/360 (36%), Positives = 193/360 (53%), Gaps = 16/360 (4%) Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPA-IRLTG 186 QH++ SF+ S+L+ P YKVYTPF K LI+ + P + +R Sbjct: 3 QHKINVNSFNGSLLIEPWQCKKDDGTHYKVYTPFYKELIKIRKYRSNIAKPNFSYLRKLN 62 Query: 187 PVTPSNIPRFFD--YPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244 + + + + +Q I + IGE + IL +F KV Y RD + TS+ Sbjct: 63 NSENLDSLKLIEPKHSWQNIIKQWQIGESASHQILEEFLDNKVKEYKTARDFMSTDSTSK 122 Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304 LSPYL G +SP Q +N ++ L + ++ EL+WR+F + + +YP + Sbjct: 123 LSPYLHFGEISPNQIFNAVQ-----SLDYIGNNEEHFIKELVWRDFSYYQIYYYPEL-HN 176 Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364 K + +W+ D LL+ W++G TG PI+DA MR+L G+MHNR+RMI ASFL+K+ Sbjct: 177 KNINQKFDSFKWDNDPTLLKKWQKGQTGIPIVDAGMRELWQAGYMHNRVRMIVASFLIKN 236 Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424 L+ W+ GE++F L D D ASNN WQW A G D+ PYFRIFNP +Q ++F+ + Sbjct: 237 CLIHWKYGEKWFFDTLFDADFASNNANWQWVAGCGLDAAPYFRIFNPVLQAEKFEAY-EY 295 Query: 425 IRHWLPELNNVPTQYIHAPHS----WLDKNDLSL--NYPLPIVDHKKACHHTLNQYYAAK 478 IR ++PEL +P + I P L + ++L NYP PIVD KK+ L + K Sbjct: 296 IRKYVPELKLLPNKLIAKPWEASELVLQEAGITLGQNYPKPIVDLKKSRDRALQLHNQIK 355 >gi|113953044|ref|YP_731210.1| deoxyribodipyrimidine photolyase family protein [Synechococcus sp. CC9311] gi|113880395|gb|ABI45353.1| deoxyribodipyrimidine photolyase family protein [Synechococcus sp. CC9311] Length = 504 Score = 308 bits (788), Expect = 2e-81, Method: Composition-based stats. Identities = 118/484 (24%), Positives = 196/484 (40%), Gaps = 35/484 (7%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M++ LVW + DLR+ D+K L A V+ +++ PE W+Q S RQ F SLL Sbjct: 1 MALQLVWFKRDLRVKDHKPLQQALLRG--PVLPLYVVEPELWQQQDASERQWLFCRESLL 58 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYE-INEVRRDKLLEK 125 ++ +L+ G D +E + Q + L+ + + +RD+ + Sbjct: 59 DLRLALAALGQPLLVRSG----DVVEVFERAHRQFGLEALWSHEETGNGWTYQRDQRVAL 114 Query: 126 RLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185 + I +P ++ + + + + + + L LP Sbjct: 115 WCRQHGIAWKE-----IPQFGVIRRLRSRTRWAKRWEAQMAEPITPSPL-GLPSIEGIDA 168 Query: 186 GPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIP--AIQGTS 243 G + P P G AL L F + + Y P A G S Sbjct: 169 GVIPDCPHPTLASDPCPHRQS---GGRSMALLELDDFLEHRAPGYARSISSPNTAFTGCS 225 Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCM 303 +LS YL+ G LS R+ + G S+ + L W + + PS+ Sbjct: 226 RLSAYLTWGCLSMREVIQTSRGF-------SGRGISSFESRLHWHCHFIQKLEAQPSIEF 278 Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363 + F P+ + D LL W +G TG P +DA MR L GW++ R+R + SF Sbjct: 279 -EDFHPFMRGLRCTNDQRLLA-WAEGRTGVPFVDACMRALRAHGWINFRMRAMLMSFASY 336 Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423 L + WR + Q +D + + Q +G+ ++ R++NP QG+ D G Sbjct: 337 HLWLPWRDSGLHLARQFVDYEPGIHWSQCQMQ--SGSTAINTVRVYNPIKQGQDHDLNGE 394 Query: 424 FIRHWLPELNNVPTQYIHAPHSWLDKN------DLSLNYPLPIVDHKKACHHTLNQYYAA 477 FIR W+PEL+ V Y+H P L ++YPLP+V+ A + +A Sbjct: 395 FIRTWVPELHLVSNVYVHEPWKLSTAAQRQAGLQLGVDYPLPMVEPALAAREAKQRIWAI 454 Query: 478 KKQS 481 +++S Sbjct: 455 RERS 458 >gi|283806550|ref|NP_001164532.1| chryptochrome 1 [Acyrthosiphon pisum] Length = 553 Score = 307 bits (787), Expect = 2e-81, Method: Composition-based stats. Identities = 122/508 (24%), Positives = 203/508 (39%), Gaps = 42/508 (8%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M+V + W RN LR+ DN AL A HN+ K+I +FI + F+ SL+ Sbjct: 1 MTVAVHWFRNGLRLHDNPALIEA-HNNAEKLITLFIFDETTFNPKWYGYNPMRFLLXSLI 59 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 + +L+ G Q + + + + + Y + RD+ ++ Sbjct: 60 DLNNNLALVGGRLYILQG----NPVNIFKMIKEKIGLHFITYEQDCAHLGRTRDEKVKSF 115 Query: 127 LQHR-VICKSFDDSVLLPPGSILNHALQ-MYKVYTPFRKALIQNLVQA------------ 172 + C L P SI+ + F+ Q Sbjct: 116 CDENDIKCIETVSHTLWNPKSIIEKNGGVPPFTFKQFQNTAKQIGHPPSPVGNVDWLSVI 175 Query: 173 --DLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPM-FPIGEQNALHILRKFCKEKVYY 229 +L + + TP + + P + GE AL L++ + + Sbjct: 176 FEELPASIQDEFKNLHNPTPETFGIYPEVPENLTSTYRWYGGETRALEQLKERLEYEKEA 235 Query: 230 YVEQRDIPAIQGT------SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLN 283 +V +P S LS L G LS R+ + L + F++ +S + Sbjct: 236 FVNGFYLPNQVNPDLLSPPSSLSAALRYGCLSIRKFYWELTKLFINKFEGDLLPMYSVTS 295 Query: 284 ELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWN-----KDSHLLQAWKQGYTGFPIIDA 338 +LIWR+++ + + + P I WN ++ +L+ WK G TG+P IDA Sbjct: 296 QLIWRDYFYTMSIDNKNFGQIED-NPACISIPWNDIKIPENKKMLECWKTGKTGYPFIDA 354 Query: 339 AMRQLNTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAAS 397 MRQL GW+H+ +R ASFL + DL + W G +FM LLD D + +G W W +S Sbjct: 355 GMRQLMQEGWIHHVVRNSLASFLTRGDLWISWVEGLNHFMKYLLDADFSVCSGNWIWVSS 414 Query: 398 TGNDS-VPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDK------N 450 + + + P G R DP G +I+ ++PEL N+P Q+++ P + Sbjct: 415 STFEQLLDCPLCVCPVSYGLRLDPSGEYIKRYVPELKNMPAQFLYEPWKCPESVQKQVGC 474 Query: 451 DLSLNYPLPIVDHKKACHHTLNQYYAAK 478 + +YP IVDH A + A + Sbjct: 475 IIGKDYPNCIVDHTIASKGNRKKMLALR 502 >gi|75322263|sp|Q651U1|CRYD_ORYSJ RecName: Full=Cryptochrome DASH, chloroplastic/mitochondrial; Flags: Precursor gi|52075904|dbj|BAD45850.1| putative cryptochrome dash [Oryza sativa Japonica Group] gi|52077386|dbj|BAD46426.1| putative cryptochrome dash [Oryza sativa Japonica Group] Length = 582 Score = 307 bits (787), Expect = 2e-81, Method: Composition-based stats. Identities = 132/488 (27%), Positives = 221/488 (45%), Gaps = 43/488 (8%) Query: 1 MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQ-------WRQHGI 53 M+ + V +VW RNDLR+ DN+A+ A SDA V+ V+ P + Sbjct: 77 MRRSGGGGVAIVWFRNDLRVLDNEAVVRAWAASDA-VLPVYCVDPRISAGSTHYFGFPKT 135 Query: 54 SARQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYE 113 A ++ F+ L ++++L+++G+ D L S ++ +++ Sbjct: 136 GALRAQFLIECLEDLKRNLTKQGLDLLIRHGKPED----ILPSIAKAVTAHTVYAHKETC 191 Query: 114 INEVRRDKLLEKRLQHRVI---------------CKSFDDSVLLPPGSILNHALQMYKVY 158 E+ + L+ K L+ VI + + L + + VY Sbjct: 192 SEELLVEHLVRKGLEQVVIPQGGASNQKKPRNPKLQLIWGATLYHVDDLPFSVNNLPDVY 251 Query: 159 TPFRKAL-----IQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDP----MFP 209 T FRKA+ ++N + P P L +P F Sbjct: 252 TQFRKAVESKSSVRNCSKLPPSLGPPPGSGLDEIGGWGTVPTLESLGLSMTKAEKGMHFV 311 Query: 210 IGEQNALHILRKFC--KEKVYYYVEQRD-IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEE 266 GE AL + ++ K+++ Y E R+ + +++ SP+L+ G LSPR +K Sbjct: 312 GGESAALGRVHEYFWKKDQLKVYKETRNGMLGPDYSTKFSPWLASGSLSPRYICEEVKRY 371 Query: 267 FVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAW 326 + + L ELIWR+++R + A Y + P + +W++D L ++W Sbjct: 372 EKQRI--ANDSTYWVLFELIWRDYFRFISAKYGNSIFHLGG-PRNVESKWSQDQALFESW 428 Query: 327 KQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLA 386 + G TG+P+IDA M++L G+M NR R I SFLV+D+ +DWR+G E+F + LLD D A Sbjct: 429 RDGRTGYPLIDANMKELLATGFMSNRGRQIVCSFLVRDMGIDWRMGAEWFETCLLDYDPA 488 Query: 387 SNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSW 446 SN G W + A GND R F+ Q K +DP G ++ +WLPEL ++ + + P + Sbjct: 489 SNYGNWTYGAGVGNDPRE-DRYFSIPKQAKTYDPDGEYVAYWLPELRSIAKERRNFPGAS 547 Query: 447 LDKNDLSL 454 K + L Sbjct: 548 YIKQVVPL 555 >gi|326500588|dbj|BAK06380.1| predicted protein [Hordeum vulgare subsp. vulgare] Length = 592 Score = 307 bits (787), Expect = 2e-81, Method: Composition-based stats. Identities = 125/478 (26%), Positives = 215/478 (44%), Gaps = 41/478 (8%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATP-------EQWRQHGISARQSHFI 61 V +VW R+DLR+ DN+AL A S A V+ V+ P ++ A ++ F+ Sbjct: 97 VSVVWFRSDLRVLDNEALARAWAASGA-VLPVYCVDPRVLAGATHRFGFPKTGALRAQFL 155 Query: 62 YASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDK 121 L ++++L ++G+ D L ++ +++ E+ + Sbjct: 156 IECLGDLKQNLQKRGLDLLVRHGKPED----ILPEIAKAVSAHTVYAHKETCSEELLVEH 211 Query: 122 LLEKRLQHRVI-------------CKSFDDSVLLPPGSILNHALQMYKVYTPFRKAL--- 165 L+ + L+ +I + + + + + VYT FRKA+ Sbjct: 212 LVRRGLEKVIIPQGGASNKSLSPKLQLIWGATMYHIDDLPFPVSNLPDVYTQFRKAVESK 271 Query: 166 --IQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDP----MFPIGEQNALHIL 219 +++ + P P+ L +IP F GE AL + Sbjct: 272 SSVRSCSKLPPSLGPAPSSGLDEIGGWGSIPTLESLGLSVTKSEKGMRFVGGESAALGRV 331 Query: 220 RKFCK--EKVYYYVEQRD-IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKS 276 ++ +++ Y E R+ + +++ SP+L+ G LSPR ++ + Sbjct: 332 HEYFWKNDQLKVYKETRNGMLGPDYSTKFSPWLASGSLSPRYVCEEVRRYEKQRV--AND 389 Query: 277 GAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPII 336 + L ELIWR+++R L Y + P +W++D L ++WK G TG+P+I Sbjct: 390 STYWVLFELIWRDYFRFLSEKYGNSIFHLGG-PRKVASKWSQDQALFESWKDGRTGYPLI 448 Query: 337 DAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAA 396 DA M++L G+M NR R I SFLV+D+ +DWR+G E+F + LLD D ASN G W + A Sbjct: 449 DANMKELLATGFMSNRGRQIVCSFLVRDMGIDWRMGAEWFETCLLDYDPASNYGNWTYGA 508 Query: 397 STGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSL 454 GND R F+ Q K +DP G ++ +WLPEL ++ + + P + K + L Sbjct: 509 GVGNDPRE-DRYFSIPKQAKTYDPDGEYVAYWLPELRSLAKERRNFPGASYIKQVVPL 565 >gi|322368590|ref|ZP_08043158.1| deoxyribodipyrimidine photolyase [Haladaptatus paucihalophilus DX253] gi|320551874|gb|EFW93520.1| deoxyribodipyrimidine photolyase [Haladaptatus paucihalophilus DX253] Length = 520 Score = 307 bits (787), Expect = 2e-81, Method: Composition-based stats. Identities = 127/523 (24%), Positives = 208/523 (39%), Gaps = 80/523 (15%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQH-----------GISA 55 M LVW R DLR+ DN+AL A ++ V+ P ++ + Sbjct: 1 MKTALVWFRTDLRVRDNRALAVASEA--ERLRCVYCFDPREFGSREYGGKDSFRYEKTGS 58 Query: 56 RQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEIN 115 ++ F+ S+ ++ SL ++G E + S + ++ Sbjct: 59 HRTRFLRESVEALRISLRERGNELVVRHGRPE----EVVPSLAADIDADLVCFHALPTPE 114 Query: 116 EVRRDKLLEKRLQH-----RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNL- 169 E ++ + +RL +S L P + ++ +T FR+ + ++ Sbjct: 115 ERAVERAVTERLADPETDVDADVESIWGHTLYHPDDVPVPVAEIDDTFTTFRQTVERSDA 174 Query: 170 -----VQADLRSLPVPAI-----------RLTGPVTPSNIPRFFDYPFQAIDPM------ 207 V PVP + P IP F D + Sbjct: 175 DVRPTVDTPTTLPPVPEEVTEAGKREGEGEDGDEIDPGTIPSFADLGVEPPTRDERRVLD 234 Query: 208 FPIGEQNALHILRKFCK--EKVYYYVEQRD-IPAIQGTSQLSPYLSIGVLSPRQCWNRLK 264 F GE L L ++ +++ Y E R+ + +S+LSP+L+ G LSPR + ++ Sbjct: 235 FEGGEPAGLERLERYVWTRDRLREYKETRNGLLGSDYSSKLSPWLNAGCLSPRTVFETVQ 294 Query: 265 EEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKD----- 319 + + + + EL+WR+F++ A + S + I I+W Sbjct: 295 RYERERV--ENESTYWLVFELLWRDFFQFQFAKHGSQPFKRRGI-RRRTIDWRNGEGDGD 351 Query: 320 ----------------SHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363 + WK+G TG P +DA MR+LN G+M NR R AS L Sbjct: 352 SGHDGGDEGSGDDGDGECEFERWKRGETGIPFVDANMRELNETGYMSNRGRQNVASVLAN 411 Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423 DL +DWR G YF ++L+D D ASN G W + A GNDS R F+ Q + +DP Sbjct: 412 DLRIDWRKGAAYFETKLVDYDPASNYGNWAYVAGVGNDSRN--RSFDVLWQAEHYDPDAA 469 Query: 424 FIRHWLPELNNVPTQYIHAPHSWLDKND------LSLNYPLPI 460 ++++WLPEL +VP + H P + L YP P+ Sbjct: 470 YVKYWLPELRDVPDEKAHEPWRLTAEERDRYGVTLGEEYPEPL 512 >gi|94501552|ref|ZP_01308070.1| putative deoxyribodipyrimidine photolyase [Oceanobacter sp. RED65] gi|94426370|gb|EAT11360.1| putative deoxyribodipyrimidine photolyase [Oceanobacter sp. RED65] Length = 485 Score = 307 bits (787), Expect = 3e-81, Method: Composition-based stats. Identities = 109/481 (22%), Positives = 202/481 (41%), Gaps = 32/481 (6%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 +++VW + DLR+ D+ AL+ A + ++I P R F+Y SL + Sbjct: 1 MNVVWFKRDLRLHDHDALFKAISLGK-PCLLLYILEPSLIEDTHYDDRHWRFVYESLQDL 59 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEV-RRDKLLEKRL 127 K LS G + ++++ L + + + +F +++ I RD+ +E Sbjct: 60 NKQLSPYGHRLTVIKG----EALDVLQAIHQRHEIHTIFSHQEIGIARTFSRDRKIEYWC 115 Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187 ++ I P G+++ + + +++ P+ +L Sbjct: 116 KNNSIVWQQS-----PHGAVVRGLQHRLYWQDHWYNYMARSI-------PPIELNKLKSE 163 Query: 188 VTPSNIPRFFDYPFQAIDPMFP-IGEQNALHILRKFCKEKVYYYVEQRDIPAIQ--GTSQ 244 + + FD ++ +P F GE +A+ L F ++ +Y P+ S+ Sbjct: 164 QSCLHDVDAFDDIYKQTNPHFQYGGESSAMVTLEDFLTDRHLHYRGSISSPSRSRHYCSR 223 Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304 LSPYL+ G LS R C+ + + F K K ++ + L W + + Sbjct: 224 LSPYLAWGNLSLRYCYQQTQLAFAQ--SKGKQHLNAFSSRLHWHCHFIQKFESESRMEFE 281 Query: 305 KPFIPWTEKIEWN---KDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFL 361 + + ++ L W+QG TG+P++DA +R L T G+++ R+R + SF Sbjct: 282 AVNRGYLD-FPYDIGDSAHEKLAIWQQGKTGYPLVDACIRCLQTTGYLNFRMRAMLVSFA 340 Query: 362 VKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQ 421 L + W+ EY LD D + Q A RI+NP Q + DP+ Sbjct: 341 CHYLNLHWKSVAEYLAKLFLDFDPGIHYSQIQMQAGIT--GTNTIRIYNPVKQSQEQDPE 398 Query: 422 GTFIRHWLPELNNVPTQYIHAPH--SWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479 G FIR W PEL+++ IH+P L+K +L+YP P+V+ + ++ + Sbjct: 399 GEFIRLWCPELSSLSNDVIHSPWLLGPLEKQMFALDYPEPMVN-ADCIQINRERLWSWRS 457 Query: 480 Q 480 + Sbjct: 458 R 458 >gi|147866138|emb|CAN79842.1| hypothetical protein VITISV_014519 [Vitis vinifera] Length = 584 Score = 307 bits (786), Expect = 3e-81, Method: Composition-based stats. Identities = 128/485 (26%), Positives = 207/485 (42%), Gaps = 57/485 (11%) Query: 4 TTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGI------SARQ 57 V +VW RNDLR+ DN+AL A +S A V+ V+ P + A + Sbjct: 103 RNGSGVAIVWFRNDLRVLDNEALVKAWASSQA-VLPVYCVDPRLFGTTHYFGFPKTGALR 161 Query: 58 SHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEV 117 + F+ L ++++L +G+ E L S ++ +++ E+ Sbjct: 162 AQFLIECLADLKRNLMNRGLNLLIQHGKPE----EILPSLAKTFEAHTVYAHKETCSEEL 217 Query: 118 RRDKLLEKRLQHRVI-----------------CKSFDDSVLLPPGSILNHALQMYKVYTP 160 ++L+ L+ V+ + S + + + VYT Sbjct: 218 NVERLVRNGLRQVVLPPSPGQSTSLSSSNHPKLQLIWGSTMYHIEDLPFSTSSLPDVYTQ 277 Query: 161 FRKALIQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILR 220 FRK++ P L GP D+ + F GE AL Sbjct: 278 FRKSVESKCTIRICIRTPT----LLGPPP-----NIEDWGSVSRGMRFIGGEAAALSR-- 326 Query: 221 KFCKEKVYYYVEQRD-IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAF 279 + + Y R+ + +++ SP+L+ G LSPR + +K + + + Sbjct: 327 ----DLLKVYKATRNGMLGADYSTKFSPWLASGSLSPRFIYQEVKRYEKER--QANDSTY 380 Query: 280 SWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAA 339 L ELIWR+++R L Y + E W++D + +AW+ G TG+P+IDA Sbjct: 381 WVLFELIWRDYFRFLSVKYRNSLFHLGGPRKVEA-RWSQDQTMFEAWRDGCTGYPLIDAN 439 Query: 340 MRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTG 399 M++L+ G+M NR R I SFLV+D+ +DWR+G E+F + LLD D SN G W + A G Sbjct: 440 MKELSATGFMSNRGRQIVCSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVG 499 Query: 400 NDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLP 459 ND R F+ Q K +DP+G ++ WLPEL +P + P +Y Sbjct: 500 NDPRE-DRYFSIPKQAKTYDPEGEYVAFWLPELQALPNDKRNFP---------GKSYINQ 549 Query: 460 IVDHK 464 IV K Sbjct: 550 IVPLK 554 >gi|297812689|ref|XP_002874228.1| predicted protein [Arabidopsis lyrata subsp. lyrata] gi|297320065|gb|EFH50487.1| predicted protein [Arabidopsis lyrata subsp. lyrata] Length = 566 Score = 307 bits (786), Expect = 3e-81, Method: Composition-based stats. Identities = 116/462 (25%), Positives = 210/462 (45%), Gaps = 25/462 (5%) Query: 2 KATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGI------SA 55 + ++W RNDLR+ DN ALY A +SD ++ V+ P + A Sbjct: 77 TKRNGKGITILWFRNDLRVLDNDALYKAWSSSDT-LLPVYCLDPRLFHTTHFFNFPKTGA 135 Query: 56 RQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEIN 115 + F+ L+ ++K+L ++G+ E L S +F +++ Sbjct: 136 LRGGFLMECLVDLRKNLMKRGLNLLIRSGKPE----EILPSLAKDFGAHTVFAHKETCSE 191 Query: 116 EVRRDKLLEKRLQ---HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQA 172 E+ ++L+ + L+ + + S + + + VYT FRK++ Sbjct: 192 ELHVERLVNQGLKGVGNGTKLELIWGSTMYHKDDLPFDVFDLPDVYTQFRKSVEAKCSIR 251 Query: 173 DLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAID----PMFPIGEQNALHI-LRKFCK-EK 226 +P+ + ++P + + F GE + F K + Sbjct: 252 SSTRIPLSLGPIPSVDDWGDVPTLEQLGIEPQEVTRGMRFVGGESAGVGRVFEYFWKKDL 311 Query: 227 VYYYVEQRD-IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNEL 285 + Y + R+ + +++ SP+L+ G +SPR + ++ + + + + L EL Sbjct: 312 LKVYKDTRNGMLGPDYSTKFSPWLAFGCISPRFIYEEVQRYEKERV--ANNSTYWVLFEL 369 Query: 286 IWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNT 345 IWR+++R L + P + +W++D L ++W+ G TG+P+IDA M++L T Sbjct: 370 IWRDYFRFLSIKCGNSLFHLGG-PRNVQGKWSQDQKLFESWRDGKTGYPLIDANMKELYT 428 Query: 346 IGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPY 405 G+M NR R I SFLV+D+ +DWR+G E+F + LLD D SN G W + A GND Sbjct: 429 TGFMSNRGRQIVCSFLVRDMGLDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGNDPRE- 487 Query: 406 FRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWL 447 R F+ Q + +DP+G ++ WL +L +P + H P + Sbjct: 488 DRYFSIPKQAQNYDPEGEYVAFWLQQLRRLPKEKRHWPGRLM 529 >gi|87123904|ref|ZP_01079754.1| Deoxyribodipyrimidine photolyase [Synechococcus sp. RS9917] gi|86168473|gb|EAQ69730.1| Deoxyribodipyrimidine photolyase [Synechococcus sp. RS9917] Length = 504 Score = 307 bits (786), Expect = 3e-81, Method: Composition-based stats. Identities = 122/482 (25%), Positives = 201/482 (41%), Gaps = 35/482 (7%) Query: 3 ATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIY 62 A + LVW + DLR D++ L A V+ ++I P+ W Q SARQ F Sbjct: 2 AVADQPLQLVWFKRDLRSVDHRPLALALERG--PVLPLYIVEPQFWLQPDASARQWAFCR 59 Query: 63 ASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYE-INEVRRDK 121 +L +Q+ LS G D++E L+ L+ V L+ + + RD+ Sbjct: 60 EALEALQERLSALGQPLVVR----VGDAVEVLERARLRLGVAALWSHEETGNAFTYARDR 115 Query: 122 LLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPA 181 ++ + I P ++ + T +++ + L L P+PA Sbjct: 116 RVKAWARSHGIPWREC-----PQFGVIRGLRRREGWATRWQERMATPLTPEPLALPPLPA 170 Query: 182 IRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIP--AI 239 I+ G + S++ D G A +L+ F + +V Y P A Sbjct: 171 IQPGGLPSASDLGLTAD----PCPCRQRGGRPQAETVLQDFLQRRVQRYCGSISSPLTAF 226 Query: 240 QGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYP 299 G S+LSPYL+ G LS R+ G ++ + L W + + P Sbjct: 227 DGCSRLSPYLTWGCLSLREVVQASASLTC-------RGVRNFRSRLHWHCHFIQKLESEP 279 Query: 300 SVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITAS 359 ++ + F P+ I D+ QAW +G TG P +DA MR L GW++ R+R + S Sbjct: 280 AI-EHRDFHPFMRDIR-VWDAERYQAWAEGRTGLPFVDACMRALIAHGWINFRMRAMLMS 337 Query: 360 FLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFD 419 L + WR + +D + + Q +G+ S+ RI+NP QG D Sbjct: 338 VATYHLWLPWRDTGLHLARLFVDYEPGIHWSQCQMQ--SGSTSINTIRIYNPIKQGLDHD 395 Query: 420 PQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479 P+G FIR W PEL + P ++H P ++P PIVD +A ++ +A ++ Sbjct: 396 PKGVFIRRWCPELAHRPDVWLHEPWR------GGGDHPAPIVDPDQAAREARDRIWAIRR 449 Query: 480 QS 481 + Sbjct: 450 AA 451 >gi|149376017|ref|ZP_01893783.1| deoxyribodipyrimidine photolyase family protein [Marinobacter algicola DG893] gi|149359654|gb|EDM48112.1| deoxyribodipyrimidine photolyase family protein [Marinobacter algicola DG893] Length = 507 Score = 307 bits (786), Expect = 3e-81, Method: Composition-based stats. Identities = 105/473 (22%), Positives = 184/473 (38%), Gaps = 25/473 (5%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 +VW + DLR D++ L AA + + VI +++ + W+ S RQ FI LL + Sbjct: 2 TTVVWFKRDLRTRDHEPLIAAVNLGE-PVIPIYVVEDDYWQLPDTSERQWAFIRDCLLDL 60 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVR-RDKLLEKRL 127 + L G + D L+ V ++F +++ RD+ + Sbjct: 61 DQQLKYAGNRLVVCNGAVTD----VLNQLKANHDVQRVFCHQETGGQWTYDRDRSVIHWC 116 Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187 + + + L+ V+ L++ V ++P + T Sbjct: 117 TENNLEYREWNQFGVV------RRLKNRDVWDKAWADLMRRPVLDSPENIPSAHSQATPL 170 Query: 188 VTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIP--AIQGTSQL 245 S D + G +L F + + Y P A++ S+L Sbjct: 171 EGISPTFTTRD----SCGDRQAGGSTKGHKLLDSFLERRCIGYQYNMSSPLSAVKACSRL 226 Query: 246 SPYLSIGVLSPRQCWNRLK--EEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCM 303 SP+++ G +S R+ + + K + L + + S+ + L W + + P + Sbjct: 227 SPHIAYGSVSLREIYQQAKITGNHRNTLPRKQKSLTSFRSRLHWHCHFIQKLEDEPELEF 286 Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363 DS LQ W++G TG+P++DA MR L GW++ R+R + + Sbjct: 287 RAMHRELEHLKSGPNDSERLQRWQEGQTGWPLVDACMRALQHTGWINFRMRAMLMAVASY 346 Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423 L + WR + Q D + + Q +G + RI+NP +Q ++ DPQG Sbjct: 347 QLWLHWRDPALHLARQFTDFEPGIHYPQAQMQ--SGLTGINALRIYNPVLQSQKLDPQGE 404 Query: 424 FIRHWLPELNNVPTQYIHAPHSWLDKNDL---SLNYPLPIVDHKKACHHTLNQ 473 FIR W+PEL VP + IH P Y P+ DH++A Sbjct: 405 FIRRWIPELAGVPAEMIHTPWLLTPAQQQRFGGNTYIAPVCDHEQAARSARKA 457 >gi|227826669|ref|YP_002828448.1| deoxyribodipyrimidine photo-lyase [Sulfolobus islandicus M.14.25] gi|227458464|gb|ACP37150.1| Deoxyribodipyrimidine photo-lyase [Sulfolobus islandicus M.14.25] Length = 433 Score = 306 bits (785), Expect = 3e-81, Method: Composition-based stats. Identities = 140/475 (29%), Positives = 217/475 (45%), Gaps = 49/475 (10%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHG--ISARQSHFIYASLLQV 68 L R DLR+ DN L A + + KVI FI P Q S +F+ SL ++ Sbjct: 4 LFIFRRDLRLDDNTGLIKALEDCE-KVIPAFILDPRQVGNENEYKSEFAINFMINSLNEL 62 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128 L ++G + F + E + + V ++ N Y RD+ + K + Sbjct: 63 NDELRKRGSRLYVY----FGLAEEVIKNLLK--DVDAVYLNEDYTPFSKMRDERIRKYCE 116 Query: 129 HRV-ICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187 I KSF+D +L N Y+ +T F + ++ +++ + Sbjct: 117 DTGKIMKSFEDYLLTSKNDFKN-----YRNFTTFYNVVKNKQIRKPVQNNYTNYYK---- 167 Query: 188 VTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSP 247 D G + + ++ + + Y +++D A + LSP Sbjct: 168 ------NSLGDEHELPPRQGERGGRKEGIKLIER---ARQINY-DRKDFVAEDNRTFLSP 217 Query: 248 YLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPF 307 +L G LS R+ + L + + +L WR+FY L+A+Y +P Sbjct: 218 HLKFGTLSIREVYYSLLDSQA------------IIRQLYWRDFYT-LLAYYNERVFHEPL 264 Query: 308 IPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLV 367 IEW + LLQAW +G TG+PIIDA MRQLN G M NR+RM++A FLVK LL+ Sbjct: 265 KREYNCIEWENNERLLQAWVEGKTGYPIIDAGMRQLNRTGDMPNRVRMLSAFFLVKVLLI 324 Query: 368 DWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRH 427 DWRIGE+YF S+L+D D + NNG WQW AS G D + FR+F+P Q +DP+ +++ Sbjct: 325 DWRIGEKYFASKLIDYDPSVNNGNWQWIASVGTDYI--FRVFDPWKQQITYDPEAKYVKR 382 Query: 428 WLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQSL 482 W+ EL + + IH + + K NYP IVD + + Y +K + Sbjct: 383 WVDELESYDAKIIHNAYKYTLK-----NYPKSIVDWRIRVNLAKRLYELCRKSKI 432 >gi|156383455|ref|XP_001632849.1| predicted protein [Nematostella vectensis] gi|156219911|gb|EDO40786.1| predicted protein [Nematostella vectensis] Length = 513 Score = 306 bits (785), Expect = 4e-81, Method: Composition-based stats. Identities = 112/494 (22%), Positives = 196/494 (39%), Gaps = 37/494 (7%) Query: 10 HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69 + W R DLR+ DN AL + N A V+ P ++ +S + F+ SL + Sbjct: 18 SMHWFRKDLRLHDNPALLESFKNCQAF-YGVYFLDPASVQRSNLSPNRWWFLLESLRDLD 76 Query: 70 KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH 129 +L G + + + LD Q + +L E +RD ++ ++ Sbjct: 77 YNLRSLGSRLLVVRGQPVQEMPKLLD----QWNIKRLTLEYDSEPPAKQRDAVVTHLAKN 132 Query: 130 -RVICKSFDDSVLLPPGSIL-NHALQMYKVYTPFRKALIQNLVQADLRSLPVPAI--RLT 185 V L ++L + ++ + K Q + Sbjct: 133 LGVEVIQRVSHTLYDVETVLETNDGKLPMTFDEMAKTAEQLGPPCPPCQTVDKTVFGACL 192 Query: 186 GPVTPSNIPR-----FFDYPFQAIDPM-----FPIGEQNALHILRKFCKEKVYYYVEQRD 235 PV P + + ++ + + + GE AL L K+ E+R Sbjct: 193 TPVGPDHADKYGVPLLSEFGMKELKEATAKKYWTGGEPEALRRLSAALKKCAENDFEERG 252 Query: 236 IPAIQ---GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYR 292 + + LSPY+ G LSPR + +L ++ K + L+ RE + Sbjct: 253 WTIDEMFSNDAHLSPYMRFGCLSPRLYYQQLALTYMK--EKKSIPPATLFTGLVRRELFL 310 Query: 293 HLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNR 352 H+ + + P + + W ++ L+ WK+G TGFP IDA MRQL GW+H+ Sbjct: 311 HVASHNADLDKMLD-NPLSVQFPWEENKEGLERWKEGKTGFPWIDAIMRQLREEGWIHHL 369 Query: 353 LRMITASFLVKD-LLVDWRIGEEYFMSQLLDGDLASNNGGWQW--AASTGNDSVPYFRIF 409 R FL + L V W G + F LD + + N W W +S + +VP+ + Sbjct: 370 ARQAVGCFLTRGCLWVSWEEGFKAFDELQLDAEWSLNASNWLWLSCSSYVHGAVPW---Y 426 Query: 410 NPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLD------KNDLSLNYPLPIVDH 463 P GK+ DP G +I+ ++PE+ +P++Y+ P + + + +YP PIVDH Sbjct: 427 CPVEVGKKVDPTGDYIKRYVPEVRGLPSEYVCEPWNAPLSVQKACRCVVGEDYPSPIVDH 486 Query: 464 KKACHHTLNQYYAA 477 + + + Sbjct: 487 MEQRMICVQRMQQL 500 >gi|303287382|ref|XP_003062980.1| predicted protein [Micromonas pusilla CCMP1545] gi|226455616|gb|EEH52919.1| predicted protein [Micromonas pusilla CCMP1545] Length = 561 Score = 306 bits (785), Expect = 4e-81, Method: Composition-based stats. Identities = 133/510 (26%), Positives = 205/510 (40%), Gaps = 60/510 (11%) Query: 1 MKATTAMSV-HLVWLR-NDLRITDNKALYAACH-----NSDAKVIAVFIATPEQ-----W 48 M A A S L+W R DLR+ DN + AA + D V+ VF P W Sbjct: 1 MPADDAASARVLLWFRGTDLRLRDNLVVDAASALVASGSGDVDVLPVFCFDPRTFAASAW 60 Query: 49 RQHGISARQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFY 108 R++ F+ S+L +++SL G + + Y L+ + Sbjct: 61 GTPKTGGRRARFLLESVLDLKRSLRDVGSDLLV----AVGKPEDVIPRYLLEGGTNVVLT 116 Query: 109 NRQYEINEVRRDKLLEKRLQ---HRVICKSFDDSVLLPPGSILN--HALQMYKVYTPFRK 163 + E R D + ++ + ++ +S + I A + +TPFR Sbjct: 117 QEEVHQEERRVDAAIASAVKIANPKNAMRTVWNSTMYHVDDIPFNADASDVPNGFTPFRN 176 Query: 164 ALIQNLVQADLRSLPVPAIRLTGPVT-----PSNIPRFFDYPFQAIDPM----------- 207 + P P + P D PF D Sbjct: 177 KVESKATVRAPAPSPKPGALPLAKASIDASVLEYEPSLDDLPFATEDERARAKAPTHPNA 236 Query: 208 ---FPIGEQNALHILRKFCKE--KVYYYVEQRD-IPAIQGTSQLSPYLSIGVLSPRQCWN 261 F GE AL + + E K+ Y E R+ + +S+LSP+L+ G +S R Sbjct: 237 VLPFEGGETAALARVEYYVWESEKIKTYFETRNGMLGGDYSSKLSPWLAHGCVSARHVHR 296 Query: 262 RLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFY------PSVCMGKPFIPWTEKIE 315 +++ + + + + ELIWR+F+ + + P G+ Sbjct: 297 EVRKYERERV--ENKSTYWLIFELIWRDFFIYFAKKHGNAIFTPHGTAGRGGTWTGGAGP 354 Query: 316 WNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEY 375 W D L+AWK+G TGFP++DA MR+L G+M NR R AS+L D VDWR+G EY Sbjct: 355 WRDDPAALKAWKEGKTGFPLVDANMRELAATGFMSNRGRQNVASWLCLDAGVDWRLGAEY 414 Query: 376 FMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNV 435 F S L+D D A+N G W AA V FN Q K +DP G +++ W+PEL +V Sbjct: 415 FESALIDYDCAANWGNWVSAAGLTGGRVNK---FNIAKQTKDYDPDGRYVKTWVPELKDV 471 Query: 436 PTQYIHAPHSWL------DKNDLSLNYPLP 459 P ++ P + ++YP P Sbjct: 472 PKGFVADPRRMPGDVAKSAGCVVGVDYPAP 501 >gi|218198696|gb|EEC81123.1| hypothetical protein OsI_24002 [Oryza sativa Indica Group] Length = 547 Score = 306 bits (785), Expect = 4e-81, Method: Composition-based stats. Identities = 131/488 (26%), Positives = 221/488 (45%), Gaps = 43/488 (8%) Query: 1 MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQ-------WRQHGI 53 M+ + V +VW RNDLR+ DN+A+ A SDA V+ V+ P + Sbjct: 42 MRRSGGGGVAIVWFRNDLRVLDNEAVVRAWAASDA-VLPVYCVDPRISAGSTHYFGFPKT 100 Query: 54 SARQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYE 113 A ++ F+ L ++++L+++G+ D L S ++ +++ Sbjct: 101 GALRAQFLIECLEDLKRNLTKQGLDLLIRHGKPED----ILPSIAKAVTAHTVYAHQETC 156 Query: 114 INEVRRDKLLEKRLQHRVI---------------CKSFDDSVLLPPGSILNHALQMYKVY 158 E+ + L+ K L+ VI + + L + + VY Sbjct: 157 SEELLVEHLVRKGLEQVVIPQGGASNQKKPRNPKLQLIWGATLYHVDDLPFSVNNLPDVY 216 Query: 159 TPFRKAL-----IQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDP----MFP 209 T FRKA+ ++N + P P L +P F Sbjct: 217 TQFRKAVESKSSVRNCSKLPPSLGPPPGSGLDEIGGWGTVPTLESLGLSMTKAEKGMHFV 276 Query: 210 IGEQNALHILRKFC--KEKVYYYVEQRD-IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEE 266 GE AL + ++ K+++ Y + R+ + +++ SP+L+ G LSPR +K Sbjct: 277 GGESAALGRVHEYFWKKDQLKVYKKTRNGMLGPDYSTKFSPWLASGSLSPRYICEEVKRY 336 Query: 267 FVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAW 326 + + L ELIWR+++R + A Y + P + +W++D L ++W Sbjct: 337 EKQRI--ANDSTYWVLFELIWRDYFRFISAKYGNSIFHLGG-PRNVESKWSQDQALFESW 393 Query: 327 KQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLA 386 + G TG+P+IDA M++L G+M NR R I SFLV+D+ +DWR+G E+F + LLD D A Sbjct: 394 RDGRTGYPLIDANMKELLATGFMSNRGRQIVCSFLVRDMGIDWRMGAEWFETCLLDYDPA 453 Query: 387 SNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSW 446 SN G W + A GND R F+ Q K +DP G ++ +WLPEL ++ + + P + Sbjct: 454 SNYGNWTYGAGVGNDPRE-DRYFSIPKQAKTYDPDGEYVAYWLPELRSIAKERRNFPGAS 512 Query: 447 LDKNDLSL 454 K + L Sbjct: 513 YIKQVVPL 520 >gi|115469358|ref|NP_001058278.1| Os06g0661800 [Oryza sativa Japonica Group] gi|113596318|dbj|BAF20192.1| Os06g0661800 [Oryza sativa Japonica Group] Length = 547 Score = 306 bits (785), Expect = 4e-81, Method: Composition-based stats. Identities = 132/488 (27%), Positives = 221/488 (45%), Gaps = 43/488 (8%) Query: 1 MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQ-------WRQHGI 53 M+ + V +VW RNDLR+ DN+A+ A SDA V+ V+ P + Sbjct: 42 MRRSGGGGVAIVWFRNDLRVLDNEAVVRAWAASDA-VLPVYCVDPRISAGSTHYFGFPKT 100 Query: 54 SARQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYE 113 A ++ F+ L ++++L+++G+ D L S ++ +++ Sbjct: 101 GALRAQFLIECLEDLKRNLTKQGLDLLIRHGKPED----ILPSIAKAVTAHTVYAHKETC 156 Query: 114 INEVRRDKLLEKRLQHRVI---------------CKSFDDSVLLPPGSILNHALQMYKVY 158 E+ + L+ K L+ VI + + L + + VY Sbjct: 157 SEELLVEHLVRKGLEQVVIPQGGASNQKKPRNPKLQLIWGATLYHVDDLPFSVNNLPDVY 216 Query: 159 TPFRKAL-----IQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDP----MFP 209 T FRKA+ ++N + P P L +P F Sbjct: 217 TQFRKAVESKSSVRNCSKLPPSLGPPPGSGLDEIGGWGTVPTLESLGLSMTKAEKGMHFV 276 Query: 210 IGEQNALHILRKFC--KEKVYYYVEQRD-IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEE 266 GE AL + ++ K+++ Y E R+ + +++ SP+L+ G LSPR +K Sbjct: 277 GGESAALGRVHEYFWKKDQLKVYKETRNGMLGPDYSTKFSPWLASGSLSPRYICEEVKRY 336 Query: 267 FVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAW 326 + + L ELIWR+++R + A Y + P + +W++D L ++W Sbjct: 337 EKQRI--ANDSTYWVLFELIWRDYFRFISAKYGNSIFHLGG-PRNVESKWSQDQALFESW 393 Query: 327 KQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLA 386 + G TG+P+IDA M++L G+M NR R I SFLV+D+ +DWR+G E+F + LLD D A Sbjct: 394 RDGRTGYPLIDANMKELLATGFMSNRGRQIVCSFLVRDMGIDWRMGAEWFETCLLDYDPA 453 Query: 387 SNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSW 446 SN G W + A GND R F+ Q K +DP G ++ +WLPEL ++ + + P + Sbjct: 454 SNYGNWTYGAGVGNDPRE-DRYFSIPKQAKTYDPDGEYVAYWLPELRSIAKERRNFPGAS 512 Query: 447 LDKNDLSL 454 K + L Sbjct: 513 YIKQVVPL 520 >gi|149725124|ref|XP_001490350.1| PREDICTED: similar to Cryptochrome-2 [Equus caballus] Length = 579 Score = 306 bits (785), Expect = 4e-81, Method: Composition-based stats. Identities = 111/447 (24%), Positives = 177/447 (39%), Gaps = 30/447 (6%) Query: 57 QSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINE 116 + F+ SL + SL + + + + VT+L + E Sbjct: 61 RRLFLLQSLEDLDTSLRKLNSRLFVVRG----QPADVFPRLFKEWGVTRLTFEYDSEPFG 116 Query: 117 VRRDKLLEKRLQH-RVICKSFDDSVLLPPGSILNHALQ-MYKVYTPFRKALIQNLVQADL 174 RD + K + V + + L I+ Q Y F+ + + + Sbjct: 117 KERDAAIMKMAKEAGVEVVTENSHTLYDLDRIIELNGQKPPLTYKRFQAIISRMELPRKP 176 Query: 175 -------RSLPVPAIRLTGPVTPSNIPRFFDYPF--QAIDPM-FPIGEQNALHILRKFCK 224 + A +P + F + + P + GE AL L K + Sbjct: 177 VGSVTSQQMESCRADIQENHDETYGVPSLEELGFPTEGLGPAVWQGGETEALARLDKHLE 236 Query: 225 EKVY--YYVEQRDIPA--IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFS 280 K + Y R A + + LSPYL G LS R + RL + + + + + S Sbjct: 237 RKAWVANYERPRMNAASLLASPTGLSPYLRFGCLSCRLFYYRLWDLYRKVK-RNSTPPLS 295 Query: 281 WLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAM 340 +L+WREF+ P + P +I W+++ L W + TGFP IDA M Sbjct: 296 LFGQLLWREFFYTAATNNPRFDRMEG-NPICIQIPWDRNPEALAKWAEAKTGFPWIDAIM 354 Query: 341 RQLNTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTG 399 QL GW+H+ R A FL + DL V W G F LLD D + N G W W S Sbjct: 355 TQLRQEGWIHHLARHAVACFLTRGDLWVSWESGVRVFDELLLDADFSVNAGSWMW-LSCS 413 Query: 400 NDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLD------KNDLS 453 +F + P G+R DP G +IR +LP+L P++YI+ P + + K + Sbjct: 414 AFFQQFFHCYCPVGFGRRTDPSGDYIRRYLPKLKAFPSRYIYEPWNAPEAVQKAAKCIIG 473 Query: 454 LNYPLPIVDHKKACHHTLNQYYAAKKQ 480 ++YP PIV+H + + + +Q Sbjct: 474 VDYPRPIVNHAETSRLNIERMKQIYQQ 500 >gi|229583833|ref|YP_002842334.1| Deoxyribodipyrimidine photo-lyase [Sulfolobus islandicus M.16.27] gi|228018882|gb|ACP54289.1| Deoxyribodipyrimidine photo-lyase [Sulfolobus islandicus M.16.27] Length = 433 Score = 306 bits (784), Expect = 5e-81, Method: Composition-based stats. Identities = 140/475 (29%), Positives = 217/475 (45%), Gaps = 49/475 (10%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHG--ISARQSHFIYASLLQV 68 L R DLR+ DN L A + + KVI FI P Q S +F+ SL ++ Sbjct: 4 LFIFRRDLRLDDNTGLIKALEDCE-KVIPAFILDPRQVGNENEYKSEFAINFMINSLNEL 62 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128 L ++G + F + E + + V ++ N Y RD+ + K + Sbjct: 63 NDELRKRGSRLYVY----FGLAEEVIKNLLK--DVDAVYLNEDYTPFSKMRDERIRKYCE 116 Query: 129 HRV-ICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187 I KSF+D +L N Y+ +T F + ++ +++ + Sbjct: 117 DTGKIMKSFEDYLLTSKNDFKN-----YRNFTTFYNVVKNKQIRKPVQNNYTNYYK---- 167 Query: 188 VTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSP 247 D G + + ++ + + Y +++D A + LSP Sbjct: 168 ------NSLGDEHELPPRQGERGGRKEGIKLIER---ARQINY-DRKDFVAEDNRTFLSP 217 Query: 248 YLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPF 307 +L G LS R+ + L + + +L WR+FY L+A+Y +P Sbjct: 218 HLKFGTLSIREVYYSLLDSQA------------IIRQLYWRDFYT-LLAYYNERVFHEPL 264 Query: 308 IPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLV 367 IEW + LLQAW +G TG+PIIDA MRQLN G M NR+RM++A FLVK LL+ Sbjct: 265 KREYNCIEWENNERLLQAWVEGKTGYPIIDAGMRQLNRTGDMPNRVRMLSAFFLVKVLLI 324 Query: 368 DWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRH 427 DWRIGE+YF S+L+D D + NNG WQW AS G D + FR+F+P Q +DP+ +++ Sbjct: 325 DWRIGEKYFASKLIDYDPSVNNGNWQWIASVGTDYI--FRVFDPWKQQITYDPEAKYVKR 382 Query: 428 WLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQSL 482 W+ EL + + IH + + K NYP IVD + + Y +K + Sbjct: 383 WVDELESYDAEIIHNAYKYTLK-----NYPKSIVDWRIRVNLAKRLYELCRKSKI 432 >gi|307826658|gb|ADN94464.1| cryptochrome [Helicoverpa armigera] Length = 548 Score = 306 bits (784), Expect = 6e-81, Method: Composition-based stats. Identities = 108/500 (21%), Positives = 190/500 (38%), Gaps = 39/500 (7%) Query: 10 HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69 ++W R+ LR+ DN +L++A +FI E + + ++ +L + Sbjct: 5 SVLWFRHGLRLHDNPSLHSALEEKGFPFFPIFIFDGETAGTKLVGYNRMRYLLEALDDLD 64 Query: 70 KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH 129 + G + + + KL + + E RD ++ + Sbjct: 65 SQFKKFGGRLIMLKGKPNV----VFRRLWEEFGIRKLCFEQDCEPVWRARDDSVKSACKE 120 Query: 130 -RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188 V+C+ L P +++ + + + + + + Sbjct: 121 IGVVCREHVSHTLWEPETVIKANGGIPPLTYQMFLHTVATIGDPPRPVPNIDFTGVKFGS 180 Query: 189 TPSNIPRFFDYPFQAIDP---------------MFPIGEQNALHILRKFCKEKVY----- 228 P + F + P + GE AL +++ + Sbjct: 181 LPECFYQEFTVYDKTPKPEDLGVFLENEDIRMIRWVGGETTALKQMQQRLSVEYETFLRG 240 Query: 229 YYVEQRDIPAIQGTS-QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKP--KSGAFSWL-NE 284 Y+ P + G LSP L G LS R + +++ F + + A ++ + Sbjct: 241 SYLPTHGNPDLLGPPISLSPALRFGCLSVRSFYWAVQDLFRQVHQGRLTTNSASHFITGQ 300 Query: 285 LIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDS-HLLQAWKQGYTGFPIIDAAMRQL 343 LIWRE++ + P+ P I W LQ W +G TGFP +DAAMRQL Sbjct: 301 LIWREYFYTMSVNNPNYG-QMAGNPICLDIPWKNPEGDELQRWVEGRTGFPFVDAAMRQL 359 Query: 344 NTIGWMHNRLRMITASFLVKD-LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDS 402 T GW+H+ R ASFL + L + W G +F+ LLD D + G W W +S+ ++ Sbjct: 360 RTEGWLHHAARNTVASFLTRGTLWLSWEHGLNHFLKYLLDADWSVCAGNWMWVSSSAFEA 419 Query: 403 -VPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWL------DKNDLSLN 455 + P G+R DP G ++R ++PEL +P +YI+ P + + Sbjct: 420 LLDSGECACPVRLGQRLDPSGEYVRRYVPELARMPVEYIYEPWKAPIDVQERATCVIGKD 479 Query: 456 YPLPIVDHKKACHHTLNQYY 475 YP P+V+H A N Sbjct: 480 YPAPVVNHLVAAQRNKNAMK 499 >gi|254515582|ref|ZP_05127642.1| deoxyribodipyrimidine photolyase [gamma proteobacterium NOR5-3] gi|219675304|gb|EED31670.1| deoxyribodipyrimidine photolyase [gamma proteobacterium NOR5-3] Length = 488 Score = 306 bits (783), Expect = 6e-81, Method: Composition-based stats. Identities = 115/482 (23%), Positives = 180/482 (37%), Gaps = 24/482 (4%) Query: 10 HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69 LVWL+ DLR+ D+ L AA + ++ ++ PE S R F++ SL ++ Sbjct: 3 TLVWLKRDLRLQDHAPLRAAIAAGSSTLL-LYCFEPELLSDPHYSDRHWRFVWQSLEDMR 61 Query: 70 KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEV-RRDKLLEKRLQ 128 +SL + + L LQ +++ + + + RD+ + LQ Sbjct: 62 RSLGPQASALHVCLGDPREIFARLLQDGQLQ----RVYSYEETGLAKTFARDRDVAAMLQ 117 Query: 129 HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188 I S + G N + + ++ Sbjct: 118 SHGIPWEEFPSNGVQRGRCNRKGWNRDWGRQMNTPCDTTNPQEIYSNAAAGSTLKAFHLT 177 Query: 189 TPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIP--AIQGTSQLS 246 P FQ GE A LR F + +V Y P + + S+LS Sbjct: 178 DPPQSWTASHKDFQT------GGESTARRTLRDFLERRVSGYARNISKPLASRESCSRLS 231 Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP 306 PYL+ G LS RQ + L E P ++ + L W + + Sbjct: 232 PYLAWGNLSIRQVYQALGE--AQNRGGPSRALQAFESRLHWHCHFIQKFEMECR-MEHED 288 Query: 307 FIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLL 366 ++AW QG TG+P+IDA+MR L G+++ R R + SFL L Sbjct: 289 INRGYLAHPRAFCEDRVRAWAQGNTGYPLIDASMRCLAATGYINFRSRAMLVSFLTHHLW 348 Query: 367 VDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIR 426 DWR+G + LD + + Q G + RI+NP Q + DP G FIR Sbjct: 349 QDWRVGAAHLAGLFLDFEPGIHFAQLQMQ--AGVTGINTIRIYNPVKQSEEHDPDGVFIR 406 Query: 427 HWLPELNNVPTQYIHAPHSWLDKNDL-----SLNYPLPIVDHKKACHHTLNQYYAAKKQS 481 W+PEL VP IH P + + Y PIVD + ++ +A K S Sbjct: 407 QWVPELAEVPAPMIHRPWDLSPMEQIIYGLDTKAYSPPIVDVSETYRSARDRLWALKDDS 466 Query: 482 LL 483 ++ Sbjct: 467 VV 468 >gi|330752633|emb|CBL87577.1| deoxyribodipyrimidine photolyase [uncultured Flavobacteria bacterium] Length = 485 Score = 306 bits (783), Expect = 7e-81, Method: Composition-based stats. Identities = 113/490 (23%), Positives = 206/490 (42%), Gaps = 34/490 (6%) Query: 6 AMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASL 65 +++++VW++ DLR D+++ + A + + + V+I + S R FIY SL Sbjct: 3 KLAINIVWIKRDLRTLDHES-FHAAESKNIPYLPVYIFDNDLIDYPDTSDRHLGFIYNSL 61 Query: 66 LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINE-VRRDKLLE 124 + + K LS + + S++ Q ++ +F ++ I + +RD + Sbjct: 62 IDINKKLSSFNKEVEIL----YGPSLDIFKYLITQFKIENIFSYQESGIKQSWQRDIKVR 117 Query: 125 KRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL 184 K I + V I+ + + +++ + Sbjct: 118 KFCNENSI-----NWVEFQRDGIIRGIKDRKNWNKNWHIQMHSQIIENSFKKQKKLKFLN 172 Query: 185 TGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIP--AIQGT 242 P+ I R ++ P GE A L+ FC +++ Y P + Sbjct: 173 KFPLPKKLINRINS----NLNSFQPAGESMAWKYLKSFCNKRISGYAYNISKPEKSRISC 228 Query: 243 SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLM---AFYP 299 S+LSPY+S G L+ + ++ L + A ++ L W + Y Sbjct: 229 SRLSPYISWGNLNIKLVYHHLIKLKKKNKNLRSINAV--ISRLHWHCHFIQKFEVDCTYE 286 Query: 300 SVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITAS 359 + + K F K + ++AW++G TG+P++DA+MR + GW++ R+R + S Sbjct: 287 TDFINKGFNSLKRK----TNIKYIKAWEEGKTGYPLVDASMRAVKNTGWINFRMRAMLVS 342 Query: 360 FLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFD 419 F V +L DWR G + Q LD + + +Q G + RI+NP K D Sbjct: 343 FFVHNLDQDWRDGVYFLAKQFLDYEPGIHYTQFQMQ--AGTTGINTIRIYNPVKNSKDHD 400 Query: 420 PQGTFIRHWLPELNNVPTQYIHAP------HSWLDKNDLSLNYPLPIVDHKKACHHTLNQ 473 P G FI+ W+PEL N+P ++IH P S + K + +YP PIV+ K+ H + Sbjct: 401 PDGVFIKKWIPELKNIPKEFIHEPCLISEMESEIYKFKIGKDYPSPIVNLKETSKHAKEK 460 Query: 474 YYAAKKQSLL 483 + K ++ Sbjct: 461 IWGHLKNKMV 470 >gi|222636034|gb|EEE66166.1| hypothetical protein OsJ_22248 [Oryza sativa Japonica Group] Length = 547 Score = 305 bits (782), Expect = 1e-80, Method: Composition-based stats. Identities = 132/488 (27%), Positives = 220/488 (45%), Gaps = 43/488 (8%) Query: 1 MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQ-------WRQHGI 53 M+ + V +VW RNDLR+ DN+A+ A SDA V V+ P + Sbjct: 42 MRRSGGGGVAIVWFRNDLRVLDNEAVVRAWAASDA-VFPVYCVDPRISAGSTHYFGFPKT 100 Query: 54 SARQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYE 113 A ++ F+ L ++++L+++G+ D L S ++ +++ Sbjct: 101 GALRAQFLIECLEDLKRNLTKQGLDLLIRHGKPED----ILPSIAKAVTAHTVYAHKETC 156 Query: 114 INEVRRDKLLEKRLQHRVI---------------CKSFDDSVLLPPGSILNHALQMYKVY 158 E+ + L+ K L+ VI + + L + + VY Sbjct: 157 SEELLVEHLVRKGLEQVVIPQGGASNQKKPRNPKLQLIWGATLYHVDDLPFSVNNLPDVY 216 Query: 159 TPFRKAL-----IQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDP----MFP 209 T FRKA+ ++N + P P L +P F Sbjct: 217 TQFRKAVESKSSVRNCSKLPPSLGPPPGSGLDEIGGWGTVPTLESLGLSMTKAEKGMHFV 276 Query: 210 IGEQNALHILRKFC--KEKVYYYVEQRD-IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEE 266 GE AL + ++ K+++ Y E R+ + +++ SP+L+ G LSPR +K Sbjct: 277 GGESAALGRVHEYFWKKDQLKVYKETRNGMLGPDYSTKFSPWLASGSLSPRYICEEVKRY 336 Query: 267 FVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAW 326 + + L ELIWR+++R + A Y + P + +W++D L ++W Sbjct: 337 EKQRI--ANDSTYWVLFELIWRDYFRFISAKYGNSIFHLGG-PRNVESKWSQDQALFESW 393 Query: 327 KQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLA 386 + G TG+P+IDA M++L G+M NR R I SFLV+D+ +DWR+G E+F + LLD D A Sbjct: 394 RDGRTGYPLIDANMKELLATGFMSNRGRQIVCSFLVRDMGIDWRMGAEWFETCLLDYDPA 453 Query: 387 SNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSW 446 SN G W + A GND R F+ Q K +DP G ++ +WLPEL ++ + + P + Sbjct: 454 SNYGNWTYGAGVGNDPRE-DRYFSIPKQAKTYDPDGEYVAYWLPELRSIAKERRNFPGAS 512 Query: 447 LDKNDLSL 454 K + L Sbjct: 513 YIKQVVPL 520 >gi|22327046|ref|NP_568461.2| CRY3 (cryptochrome 3); DNA binding / DNA photolyase/ FMN binding [Arabidopsis thaliana] gi|119390180|pdb|2IJG|X Chain X, Crystal Structure Of Cryptochrome 3 From Arabidopsis Thaliana gi|238828067|pdb|2VTB|A Chain A, Structure Of Cryptochrome 3 - Dna Complex gi|238828069|pdb|2VTB|C Chain C, Structure Of Cryptochrome 3 - Dna Complex gi|238828070|pdb|2VTB|D Chain D, Structure Of Cryptochrome 3 - Dna Complex gi|238828071|pdb|2VTB|E Chain E, Structure Of Cryptochrome 3 - Dna Complex gi|238828072|pdb|2VTB|F Chain F, Structure Of Cryptochrome 3 - Dna Complex gi|18086429|gb|AAL57669.1| AT5g24850/F6A4_60 [Arabidopsis thaliana] gi|20857182|gb|AAM26705.1| AT5g24850/F6A4_60 [Arabidopsis thaliana] gi|332005986|gb|AED93369.1| cryptochrome DASH [Arabidopsis thaliana] Length = 526 Score = 305 bits (781), Expect = 1e-80, Method: Composition-based stats. Identities = 118/460 (25%), Positives = 208/460 (45%), Gaps = 25/460 (5%) Query: 4 TTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGI------SARQ 57 V ++W RNDLR+ DN ALY A +SD ++ V+ P + A + Sbjct: 37 RKGKGVTILWFRNDLRVLDNDALYKAWSSSDT-ILPVYCLDPRLFHTTHFFNFPKTGALR 95 Query: 58 SHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEV 117 F+ L+ ++K+L ++G+ E L S +F +++ EV Sbjct: 96 GGFLMECLVDLRKNLMKRGLNLLIRSGKPE----EILPSLAKDFGARTVFAHKETCSEEV 151 Query: 118 RRDKLLEKRLQHRV---ICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADL 174 ++L+ + L+ + S + + + VYT FRK++ Sbjct: 152 DVERLVNQGLKRVGNSTKLELIWGSTMYHKDDLPFDVFDLPDVYTQFRKSVEAKCSIRSS 211 Query: 175 RSLPVPAIRLTGPVTPSNIPRFFDYPFQAID----PMFPIGEQNALHI-LRKFCK-EKVY 228 +P+ ++P + + F GE + F K + + Sbjct: 212 TRIPLSLGPTPSVDDWGDVPTLEKLGVEPQEVTRGMRFVGGESAGVGRVFEYFWKKDLLK 271 Query: 229 YYVEQRD-IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIW 287 Y E R+ + +++ SP+L+ G +SPR + ++ + + + + L ELIW Sbjct: 272 VYKETRNGMLGPDYSTKFSPWLAFGCISPRFIYEEVQRYEKERV--ANNSTYWVLFELIW 329 Query: 288 REFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIG 347 R+++R L + P + +W++D L ++W+ TG+P+IDA M++L+T G Sbjct: 330 RDYFRFLSIKCGNSLFHLGG-PRNVQGKWSQDQKLFESWRDAKTGYPLIDANMKELSTTG 388 Query: 348 WMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFR 407 +M NR R I SFLV+D+ +DWR+G E+F + LLD D SN G W + A GND R Sbjct: 389 FMSNRGRQIVCSFLVRDMGLDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGNDPRE-DR 447 Query: 408 IFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWL 447 F+ Q + +DP+G ++ WL +L +P + H P + Sbjct: 448 YFSIPKQAQNYDPEGEYVAFWLQQLRRLPKEKRHWPGRLM 487 >gi|150261312|pdb|2J4D|A Chain A, Cryptochrome 3 From Arabidopsis Thaliana gi|150261313|pdb|2J4D|B Chain B, Cryptochrome 3 From Arabidopsis Thaliana gi|28971609|dbj|BAC65244.1| cryptochrome dash [Arabidopsis thaliana] Length = 525 Score = 305 bits (781), Expect = 1e-80, Method: Composition-based stats. Identities = 118/460 (25%), Positives = 208/460 (45%), Gaps = 25/460 (5%) Query: 4 TTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGI------SARQ 57 V ++W RNDLR+ DN ALY A +SD ++ V+ P + A + Sbjct: 36 RKGKGVTILWFRNDLRVLDNDALYKAWSSSDT-ILPVYCLDPRLFHTTHFFNFPKTGALR 94 Query: 58 SHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEV 117 F+ L+ ++K+L ++G+ E L S +F +++ EV Sbjct: 95 GGFLMECLVDLRKNLMKRGLNLLIRSGKPE----EILPSLAKDFGARTVFAHKETCSEEV 150 Query: 118 RRDKLLEKRLQHRV---ICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADL 174 ++L+ + L+ + S + + + VYT FRK++ Sbjct: 151 DVERLVNQGLKRVGNSTKLELIWGSTMYHKDDLPFDVFDLPDVYTQFRKSVEAKCSIRSS 210 Query: 175 RSLPVPAIRLTGPVTPSNIPRFFDYPFQAID----PMFPIGEQNALHI-LRKFCK-EKVY 228 +P+ ++P + + F GE + F K + + Sbjct: 211 TRIPLSLGPTPSVDDWGDVPTLEKLGVEPQEVTRGMRFVGGESAGVGRVFEYFWKKDLLK 270 Query: 229 YYVEQRD-IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIW 287 Y E R+ + +++ SP+L+ G +SPR + ++ + + + + L ELIW Sbjct: 271 VYKETRNGMLGPDYSTKFSPWLAFGCISPRFIYEEVQRYEKERV--ANNSTYWVLFELIW 328 Query: 288 REFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIG 347 R+++R L + P + +W++D L ++W+ TG+P+IDA M++L+T G Sbjct: 329 RDYFRFLSIKCGNSLFHLGG-PRNVQGKWSQDQKLFESWRDAKTGYPLIDANMKELSTTG 387 Query: 348 WMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFR 407 +M NR R I SFLV+D+ +DWR+G E+F + LLD D SN G W + A GND R Sbjct: 388 FMSNRGRQIVCSFLVRDMGLDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGNDPRE-DR 446 Query: 408 IFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWL 447 F+ Q + +DP+G ++ WL +L +P + H P + Sbjct: 447 YFSIPKQAQNYDPEGEYVAFWLQQLRRLPKEKRHWPGRLM 486 >gi|238618755|ref|YP_002913580.1| Deoxyribodipyrimidine photo-lyase [Sulfolobus islandicus M.16.4] gi|238379824|gb|ACR40912.1| Deoxyribodipyrimidine photo-lyase [Sulfolobus islandicus M.16.4] Length = 433 Score = 305 bits (781), Expect = 1e-80, Method: Composition-based stats. Identities = 139/475 (29%), Positives = 217/475 (45%), Gaps = 49/475 (10%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHG--ISARQSHFIYASLLQV 68 L R DLR+ DN L A + + KVI FI P Q S +F+ SL ++ Sbjct: 4 LFIFRRDLRLDDNTGLIKALEDCE-KVIPAFILDPRQVGNENEYKSEFAINFMINSLNEL 62 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128 L ++G + F + E + + V ++ N Y RD+ + + + Sbjct: 63 NDELRKRGSRLYVY----FGLAEEVIKNLLK--DVDAVYLNEDYTPFSKMRDERIRRYCE 116 Query: 129 HRV-ICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187 I KSF+D +L N Y+ +T F + ++ +++ + Sbjct: 117 DTGKIMKSFEDYLLTSKNDFKN-----YRNFTTFYNVVKNKQIRKPVQNNYTNYYK---- 167 Query: 188 VTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSP 247 D G + + ++ + + Y +++D A + LSP Sbjct: 168 ------NSLGDEHELPPRQGERGGRKEGIKLIGR---ARQIDY-DRKDFVAEDNRTFLSP 217 Query: 248 YLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPF 307 +L G LS R+ + L + V + +L WR+FY L+A+Y +P Sbjct: 218 HLKFGTLSIREVYYSLLDSQV------------IIRQLYWRDFYT-LLAYYNERVFHEPL 264 Query: 308 IPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLV 367 IEW + L QAW +G TG+PIIDA MRQLN G + NR+RM+TA FLVK LL+ Sbjct: 265 KREYNCIEWENNERLFQAWVEGKTGYPIIDAGMRQLNRTGDIPNRVRMLTAFFLVKVLLI 324 Query: 368 DWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRH 427 DWRIGE+YF S+L+D D + NNG WQW AS G D + FR+F+P Q +DP+ +++ Sbjct: 325 DWRIGEKYFASKLIDYDPSVNNGNWQWIASVGTDYI--FRVFDPWKQQITYDPEAKYVKR 382 Query: 428 WLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQSL 482 W+ EL + + IH + + K NYP IVD + + Y +K + Sbjct: 383 WVDELESYDAEIIHNAYKYTLK-----NYPKSIVDWRIRVNLAKRLYEVCRKSKI 432 >gi|330448317|ref|ZP_08311965.1| DNA photolyase family protein [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] gi|328492508|dbj|GAA06462.1| DNA photolyase family protein [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] Length = 491 Score = 305 bits (780), Expect = 1e-80, Method: Composition-based stats. Identities = 123/492 (25%), Positives = 208/492 (42%), Gaps = 39/492 (7%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 V++VWL+ DLR++D++AL A NSD V+ ++I P S R FI+ SL Sbjct: 2 KKVNVVWLKRDLRLSDHQALSVAA-NSDLPVMLIYIMEPMLLSDPHYSERHWRFIWQSLQ 60 Query: 67 QVQKSLSQKGI-VFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEIN-EVRRDKLLE 124 + L+ VF +H +++E LD + LF +++ + RD ++ Sbjct: 61 DINHQLAGVNSQVFIFH-----GNAVECLDKLMHHFPINALFSHQEIGLGCTFERDLNIK 115 Query: 125 KRL-QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIR 183 + ++ F G+++ A + +++A L S+ + + Sbjct: 116 AWCDKQQIQWHEFQQ------GAVIRGAKNRTNWDKHW-----NRVMRAPLYSVNLDKVN 164 Query: 184 LTGPVTPSNIPRFFDYPF---QAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIP--A 238 F P + + M G AL L F + Y P + Sbjct: 165 WVSISPDQLADMLFSPPKSWCERVQGMQTGGSTLALQTLDDFFSRRGKEYYRSISSPTAS 224 Query: 239 IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFY 298 S+LSPYL+ G +S RQ + ++ + + A S + L W + Sbjct: 225 RTACSRLSPYLAWGNISLRQVYQQVLAHWNVKGFRRSLIALS--SRLHWHCHFIQKFESE 282 Query: 299 PSV---CMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRM 355 P + CM + + + +KD L AWK+G TG P+IDA MR L G+++ R+R Sbjct: 283 PDIEFFCMNRTYDRLLTQY-CSKDELKLNAWKEGNTGIPLIDACMRCLYHTGYINFRMRS 341 Query: 356 ITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQG 415 + SFL L +DWR G + LD + + +Q G + RI+NPT Q Sbjct: 342 MLVSFLTHHLNIDWRDGVTHLAQLFLDFEPGIHYSQFQMQ--AGVTGINTIRIYNPTKQA 399 Query: 416 KRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLD------KNDLSLNYPLPIVDHKKACHH 469 + DP G FI W+PEL NVP + P + + + D + Y PIVD +++ Sbjct: 400 QEHDPDGKFIHKWVPELANVPAPLLFEPWTLTELKIVMYQLDNNSCYLSPIVDLERSAKE 459 Query: 470 TLNQYYAAKKQS 481 + + + ++ Sbjct: 460 ARERLWGWRSRA 471 >gi|298708263|emb|CBJ48326.1| cryptochrome 3 [Ectocarpus siliculosus] Length = 549 Score = 305 bits (780), Expect = 2e-80, Method: Composition-based stats. Identities = 130/501 (25%), Positives = 206/501 (41%), Gaps = 49/501 (9%) Query: 8 SVHLVWLRN-DLRITDNKALYAACHNSDAKVIAVFIATPEQWRQ-----HGISARQSHFI 61 ++ +VW + DLR+ D++ L A NS + V VF + +SA + F+ Sbjct: 22 TIGVVWFKCTDLRLEDHEPLALAHRNS-SHVAHVFCIDDRWFGHSRRGTRRMSAARCRFL 80 Query: 62 YASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDK 121 S+ +Q L KG + + ++ + E Sbjct: 81 LESVADLQTRLRAKGSDLLIRRGHPENAIPAVAARLGSGASAVTVYAHPDLCSEENDVHA 140 Query: 122 LLEKRL------------QHRVICKSFDDSVLLPPGSIL-NHALQMYKVYTPFRKALIQN 168 ++ L V + L P + + + +V+TPFRKA+ N Sbjct: 141 AVKSALSLVGSAGGVGGDATGVSVTEVWGNTLHDPSDLPYDFPNGLPEVFTPFRKAVEPN 200 Query: 169 LVQADLRSLPVPAIRLTG--------PVTPSNIPRFFDYPFQAIDP-------MFPIGEQ 213 LP P L P IP + F GE Sbjct: 201 CKIRSPVPLPSPFRPLPAGLHDNAVTPTLTVAIPTTEELGLGTAPERDARSVLHFIGGET 260 Query: 214 NALHILRKFCKEKVY--YYVEQRD-IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDL 270 L ++ + E+ + Y R+ + +S+ SP+L++G LSPR +++ D Sbjct: 261 AGLRRVQTYIWEEDHLREYKVTRNGLLGGGFSSKFSPWLALGCLSPRTIVKEIRKYETDR 320 Query: 271 LIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPF-IPWTEKIEWNKDSHLLQAWKQG 329 + + + EL+ R+F+R+ Y + +++ W D+ LL AWK+G Sbjct: 321 I--ANDSTYWLIFELLVRDFFRYSAVKYGNAIFHLGGSRRDSDRQTWRDDAGLLAAWKEG 378 Query: 330 YTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNN 389 TG+P +DA MR+L G+M NR R + ASF KDL +DWR+G E+F LLD D ASN Sbjct: 379 RTGYPFVDANMRELKASGFMSNRGRQVVASFFTKDLEMDWRLGAEHFEEYLLDYDPASNY 438 Query: 390 GGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQY------IHAP 443 G W + A G D R F+ Q + +D G ++RHWLPEL + T+ I A Sbjct: 439 GNWNYVAGVGFDPRE-DRYFSVEKQARTYDADGDYVRHWLPELAMLTTEALQSAGGITAT 497 Query: 444 HSWLDKNDLSLNYPLPIVDHK 464 + S+ YP P+V K Sbjct: 498 LREVHSVPTSV-YPDPVVPLK 517 >gi|294811681|ref|ZP_06770324.1| deoxyribodipyrimidine photo-lyase [Streptomyces clavuligerus ATCC 27064] gi|326440135|ref|ZP_08214869.1| deoxyribodipyrimidine photo-lyase [Streptomyces clavuligerus ATCC 27064] gi|294324280|gb|EFG05923.1| deoxyribodipyrimidine photo-lyase [Streptomyces clavuligerus ATCC 27064] Length = 453 Score = 304 bits (779), Expect = 2e-80, Method: Composition-based stats. Identities = 131/461 (28%), Positives = 212/461 (45%), Gaps = 22/461 (4%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M+V ++ +DLR+ D AL AA +D +V+ +F+ R + + F+ SL Sbjct: 1 MTVSVILFTSDLRVHDQPALAAAVREAD-EVVPLFVLDRGVRRSGFDAPNRLAFLADSLT 59 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 + + L ++G D E + + + RR+ L Sbjct: 60 ALDEELRERGGRLVLRTG----DVAEQVGRVVTETGARTVHLAAGVSAYARRREDRLRAG 115 Query: 127 LQHRVICKSFDDSVL--LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL 184 L + V+ +PPG++ + V+TP+ + + R + L Sbjct: 116 LSGLRCGLRVHEGVITVVPPGAVTPANRDHFAVFTPYFRRW----AEVAPRRVLAAPRSL 171 Query: 185 TGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244 T P P + + GE+ LR++ + Y E D TS+ Sbjct: 172 TVPELPGHPLPRRRSVTGTAPALARGGEREGRERLRRWLARDLDGYAEHHDDLPGDATSR 231 Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304 LSP+L G LS + R + + GA +++ +L WR+F+ ++A P Sbjct: 232 LSPHLHFGTLSAAELVQRAR-------GRGGPGAQAFVRQLAWRDFHHQVLAARPDAA-H 283 Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364 + P ++ W D + AWK+G TG P++DA MRQL GWMHNR R++TAS+L K Sbjct: 284 ADYRPRGDR--WRGDEREIAAWKEGRTGCPVVDAGMRQLRHEGWMHNRARLLTASYLTKT 341 Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424 L DWR+G +F+ L+DGD+A N WQW A TG D+ P R+ +P Q +RFDP G + Sbjct: 342 LYTDWRVGARHFLELLVDGDIADNQLNWQWVAGTGTDTRP-GRVLSPLAQARRFDPHGAY 400 Query: 425 IRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKK 465 +R W+PEL ++ + IH+P + L YP P++D + Sbjct: 401 VRRWVPELADLGDREIHSPETLDPARRARLGYPDPLIDPAE 441 >gi|195157984|ref|XP_002019874.1| GL12637 [Drosophila persimilis] gi|198455482|ref|XP_001360014.2| GA17677 [Drosophila pseudoobscura pseudoobscura] gi|205696352|sp|Q293P8|CRY1_DROPS RecName: Full=Cryptochrome-1 gi|194116465|gb|EDW38508.1| GL12637 [Drosophila persimilis] gi|198133263|gb|EAL29166.2| GA17677 [Drosophila pseudoobscura pseudoobscura] Length = 540 Score = 304 bits (779), Expect = 2e-80, Method: Composition-based stats. Identities = 126/515 (24%), Positives = 207/515 (40%), Gaps = 50/515 (9%) Query: 10 HLVWLRNDLRITDNKALYAACHNSDA--KVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67 +++W R+ LR+ DN AL AA D +I VFI E + + F+ SL Sbjct: 7 NVLWFRHGLRLHDNPALLAALEEKDQGIPLIPVFIFDGESAGTKSVGYNRMRFLLDSLQD 66 Query: 68 VQKSLSQ----KGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLL 123 + + L +G +F + Q R+ K+ E RD+ Sbjct: 67 LDEQLQSATEGRGRLFVFEGEPTL-----IFRRLHEQVRLHKICAELDCEPIWNERDESA 121 Query: 124 EKRLQHRVIC------KSFDDSVLL-------PPGSILNHALQMYKVYTPFRKALIQNLV 170 + I + D L+ PP + + + P R A+ ++ Sbjct: 122 RLLCRELGIEYVEKVSHTLWDPRLVIETNGGIPPLTYQMFLHTVQIIGVPPRPAIDAHIN 181 Query: 171 QADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPM----FPIGEQNALHILRKFCKEK 226 A L + G P F+ + + + GE AL +L + K + Sbjct: 182 DATFIQLAPELRQHLGCFDQVPNPEHFNIYSDNMGFLAKINWRGGETQALALLEERLKVE 241 Query: 227 VYYYVEQRDIPAI------QGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPK----- 275 + +P + +S +L G LS R+ + + + F ++ + Sbjct: 242 RNAFERGYYLPNQANPNIQEAPKSMSAHLRFGCLSVRRFYWSVHDLFENVQLAACVRGVQ 301 Query: 276 -SGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNK-DSHLLQAWKQGYTGF 333 G +LIWRE++ + P+ + I W K D +LLQ W+ G TGF Sbjct: 302 IEGGAHITGQLIWREYFYTMSVNNPNYDRMEG-NEICLTIPWAKPDENLLQRWRLGQTGF 360 Query: 334 PIIDAAMRQLNTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGW 392 P+ID AMRQL GW+H+ LR A+FL + L W G ++F+ LLD D + G W Sbjct: 361 PLIDGAMRQLLAEGWLHHTLRNTVATFLTRGGLWQSWEPGLKHFLKYLLDADWSVCAGNW 420 Query: 393 QWAASTGNDSVPYFR-IFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND 451 W +S+ + + + P KR DP+G +IR ++PEL N+P +YIH P + Sbjct: 421 MWVSSSAFERLLDSSLVTCPVALAKRLDPEGVYIRRYVPELKNLPKEYIHEPWRLSAEQQ 480 Query: 452 ------LSLNYPLPIVDHKKACHHTLNQYYAAKKQ 480 + ++YP I+D KA + A + Sbjct: 481 VKFECLIGVHYPERIIDLSKAVKRNMMAMTALRNS 515 >gi|149916244|ref|ZP_01904765.1| Deoxyribodipyrimidine photolyase [Roseobacter sp. AzwK-3b] gi|149809904|gb|EDM69755.1| Deoxyribodipyrimidine photolyase [Roseobacter sp. AzwK-3b] Length = 494 Score = 304 bits (778), Expect = 2e-80, Method: Composition-based stats. Identities = 112/479 (23%), Positives = 188/479 (39%), Gaps = 30/479 (6%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 + W + DLRI D+ AL+ A V+ V+I PE WRQ S RQ F+ L +++ Sbjct: 2 ICWFKRDLRIADHPALHMAA--GLGPVLPVYILEPELWRQDDASGRQYAFLTECLTDLRE 59 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYE-INEVRRDKLLEKRLQH 129 L++ G+ D++E LD L + + RD+ + + Sbjct: 60 DLARAGLSLVLR----VGDAVEVLDDLRRSFGAAHLVSHEETGNGWTYARDRRVAGWARS 115 Query: 130 RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189 + + +P ++ + + + + + V A Sbjct: 116 QGVVWHE-----VPQCGVVRRLATRDRWQSGRDGFMRAPQLGVPVGLHGVEA-------P 163 Query: 190 PSNIPRFFDYPFQAIDPM-FPIGEQNALHILRKFCKEKVYYYVEQRDIP--AIQGTSQLS 246 ++P + P G + L+ F ++ Y P Q S++S Sbjct: 164 SDDLPDAMALGLKDSCPQRQKGGRRAGQATLQSFLHDRGQTYRRAMSSPLEGAQACSRIS 223 Query: 247 PYLSIGVLSPRQCWNRLKEEFVDL---LIKPKSGAFSWLNELIWREFYRHLMAFYPSVCM 303 P+L+ G LS R+ + S+ + L WR+ + + P++ Sbjct: 224 PHLAFGTLSVREAVQAGAARAAAVKGGRDGWSGSMRSFQSRLAWRDHFMQKLEDEPAL-E 282 Query: 304 GKPFIPWTEKIEWNK-DSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLV 362 + P E + D+ LQAW +G TG P +DA MR L GW++ R+R + + Sbjct: 283 YRCLHPAYEGLRPQTPDATRLQAWSKGETGLPFVDACMRSLAATGWLNFRMRSMVMAVAS 342 Query: 363 KDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQG 422 L +DW+ D + + Q +G + RI+NP QG DP G Sbjct: 343 YHLWLDWKATGPVLARLFTDYEPGIHWSQVQMQ--SGTTGMNTIRIYNPVKQGHDQDPTG 400 Query: 423 TFIRHWLPELNNVPTQYIHAPHSWLDKND-LSLNYPLPIVDHKKACHHTLNQYYAAKKQ 480 F RHWLPEL +VP Y+ P +W L YP P+VD +A Q +A +++ Sbjct: 401 AFTRHWLPELADVPDAYLQTPWAWGGAGRLLGRRYPEPLVDVARAAKTAREQVWAVRRR 459 >gi|70606996|ref|YP_255866.1| deoxyribodipyrimidine photolyase [Sulfolobus acidocaldarius DSM 639] gi|68567644|gb|AAY80573.1| deoxyribodipyrimidine photolyase [Sulfolobus acidocaldarius DSM 639] Length = 430 Score = 304 bits (778), Expect = 2e-80, Method: Composition-based stats. Identities = 144/469 (30%), Positives = 226/469 (48%), Gaps = 46/469 (9%) Query: 12 VWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQ-WRQHGISARQSHFIYASLLQVQK 70 V R DLR+ DN AL A ++ + K+ +FI P Q S + F+ SL+++ K Sbjct: 5 VIFRRDLRLFDNTALVNAVYHCN-KIYPIFIVDPRQMINNPYKSEFAATFLINSLVELDK 63 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK-RLQH 129 L+ V+ + ++ + LD V +F N Y ++RD+ +++ L Sbjct: 64 ELNGNLNVYYGYP----ENIVSKLDM------VNAIFINEDYTPFAIQRDEKMKENALNK 113 Query: 130 RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189 + S+ D +L S +++ + +TPF + V + V ++ Sbjct: 114 GIKFFSYPDVLL----SAEEKKIKIGRSFTPFYTKARELEV---PKPQSVDKSINVERIS 166 Query: 190 PSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYL 249 S F + P+ G L +L + Y ++D PA + S LSP+L Sbjct: 167 NSLSIDFLLTFKKVESPLLKGGRPEGLMLLD-----REIDYS-RKDYPAEKNYSMLSPHL 220 Query: 250 SIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIP 309 G +SPR+ +++ K ++ +L WR+FY L P V G F Sbjct: 221 KFGTVSPREVYHK------------KISDQAFTRQLYWRDFYTLLAYQNPYV-FGHSFKT 267 Query: 310 WTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDW 369 +KI+W AWK G TG+PIIDA MR LNT G+++ R+RM+ A FL K L VDW Sbjct: 268 EYDKIKWENSERYFNAWKDGMTGYPIIDAGMRALNTTGFINGRVRMLVAFFLTKVLFVDW 327 Query: 370 RIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWL 429 R+GE YF ++L+D D A NNG WQW ASTG D + FR+F+P Q +++DP+ FI+ ++ Sbjct: 328 RLGERYFATKLVDYDPAVNNGNWQWVASTGTDYI--FRVFDPWKQQEKYDPEAKFIKDYV 385 Query: 430 PELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478 EL + P IH +L K YP PIV+ ++ Y++ K Sbjct: 386 RELRDYPPSVIH--KVYLHKI---TGYPSPIVNWRERVEMVKQVYFSTK 429 >gi|195055524|ref|XP_001994667.1| GH17366 [Drosophila grimshawi] gi|193892430|gb|EDV91296.1| GH17366 [Drosophila grimshawi] Length = 539 Score = 304 bits (778), Expect = 2e-80, Method: Composition-based stats. Identities = 115/516 (22%), Positives = 209/516 (40%), Gaps = 52/516 (10%) Query: 10 HLVWLRNDLRITDNKALYAACHNSD--AKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67 +++W R+ LR+ DN AL +A + D +I +FI E + + F+ SL Sbjct: 7 NVIWFRHGLRLHDNPALLSALADKDYGIALIPIFIFDGESAGTKSVGYNRMRFLLDSLDD 66 Query: 68 VQKSLSQ----KGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLL 123 + K L + +G + + Q R+ K+ E RD+ + Sbjct: 67 IDKQLKEVSDGQGGLLICE-----GQPTDIFRRLHDQVRLHKICVELDCEPIWNERDEAI 121 Query: 124 EKRLQH-RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPA- 181 + + L P ++++ + + + +++ R + P Sbjct: 122 NNLCRELGIEYVEMVSHTLWDPRTVIDTNGGIAPLTYQMFLHTV-HIIGLPPRPVHDPQF 180 Query: 182 ------------IRLTGPVTPSNIPRFFDYPFQAIDPM----FPIGEQNALHILRKFCKE 225 R G + + P F+ + + + GE AL +L + K Sbjct: 181 DGVGFVQLSAEMRREIGCLEKTPSPEHFNVYSDNMGTLAKINWVGGESQALLLLGERLKV 240 Query: 226 KVYYYVEQRDIPA------IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPK---- 275 + + + +P + +S +L G LS R+ + + + F ++ ++ Sbjct: 241 EQHAFERGYYLPNQALPNIVDKPKSMSAHLRFGCLSVRRFYWNVHDLFKNVQLRACIRGV 300 Query: 276 --SGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNK-DSHLLQAWKQGYTG 332 + +LIWRE++ + P + I W K + LQ W+ G TG Sbjct: 301 QMTSGAHITGQLIWREYFYTMSVNNPQYDRMEG-NEICLNIPWAKPNEDHLQRWRLGQTG 359 Query: 333 FPIIDAAMRQLNTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGG 391 FP+IDAAMRQL GW+H+ LR A+FL + L +W G ++F+ LLD D + G Sbjct: 360 FPLIDAAMRQLLAEGWLHHTLRNTVATFLTRGGLWQNWEFGLQHFLKYLLDADWSVCAGN 419 Query: 392 WQWAASTGNDS-VPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKN 450 W W +S+ + + ++ P KRFDP G +I+ ++PEL NV ++IH P + Sbjct: 420 WMWVSSSAFERLLDTSQVSCPVALAKRFDPNGVYIKQYVPELRNVTKEFIHEPWRMTAEQ 479 Query: 451 D------LSLNYPLPIVDHKKACHHTLNQYYAAKKQ 480 + ++YP I+D A + A + Sbjct: 480 QEIAECLIGVHYPERIIDLSLASKRNMAAMKALRNS 515 >gi|324103935|gb|ADY17887.1| cryptochrome [Spodoptera exigua] gi|324103937|gb|ADY17888.1| cryptochrome [Spodoptera exigua] Length = 548 Score = 304 bits (778), Expect = 3e-80, Method: Composition-based stats. Identities = 111/500 (22%), Positives = 191/500 (38%), Gaps = 39/500 (7%) Query: 10 HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69 ++W R+ LR+ DN +L++A +FI E + + ++ +L + Sbjct: 5 SVLWFRHGLRLHDNPSLHSALEEKGFPFFPIFIFDGETAGTKVVGYNRMRYLLEALDDLD 64 Query: 70 KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH 129 + G + + + KL + + E RD ++ + Sbjct: 65 SQFKKHGGRLIMLKGKPNV----VFRRLWEEFGIRKLCFEQDCEPVWRARDDSVKNACKE 120 Query: 130 -RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188 V+CK L P +++ + + + + V + Sbjct: 121 IGVVCKEHVSHTLWEPDTVIKANGGIPPLTYQMFLHTVATIGDPPRPVGEVDFTGVKFGS 180 Query: 189 TPSNIPRFFDYPFQAIDP---------------MFPIGEQNALHILRKFCKEKVY----- 228 P + F + P + GE AL +++ + Sbjct: 181 LPESFYNEFTVFDKTPKPEDLGVFLETEDIRMIRWVGGETTALKQMQQRLTVEYETFLRG 240 Query: 229 YYVEQRDIPAIQGTS-QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKP--KSGAFSWL-NE 284 Y+ P + G LSP L G LS R + +++ F + + A ++ + Sbjct: 241 SYLPTHGNPDLLGPPISLSPALRFGCLSVRSFYWSVQDLFRQVHQGRLTSNSASHFITGQ 300 Query: 285 LIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDS-HLLQAWKQGYTGFPIIDAAMRQL 343 LIWRE++ + P+ P I W S LQ W +G TGFP +DAAMRQL Sbjct: 301 LIWREYFYTMSVNNPNYG-QMAGNPICLDIPWKTPSGDELQRWMEGRTGFPFVDAAMRQL 359 Query: 344 NTIGWMHNRLRMITASFLVKD-LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDS 402 T GW+H+ R ASFL + L + W G +F+ LLD D + G W W +S+ ++ Sbjct: 360 RTEGWLHHAARNTVASFLTRGTLWLSWEHGLNHFLKYLLDADWSVCAGNWMWVSSSAFEA 419 Query: 403 -VPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWL------DKNDLSLN 455 + P G+R DP G ++R ++PEL +P +YI+ P + + Sbjct: 420 LLDSGECACPVRLGQRLDPSGEYVRRYVPELARMPVEYIYEPWKAPIDVQERASCIIGKD 479 Query: 456 YPLPIVDHKKACHHTLNQYY 475 YP P+V+H A N Sbjct: 480 YPDPVVNHLVAAQRNRNAMK 499 >gi|15790677|ref|NP_280501.1| photolyase/cryptochrome [Halobacterium sp. NRC-1] gi|169236417|ref|YP_001689617.1| deoxyribodipyrimidine photo-lyase [Halobacterium salinarum R1] gi|10581208|gb|AAG19981.1| photolyase/cryptochrome [Halobacterium sp. NRC-1] gi|167727483|emb|CAP14271.1| deoxyribodipyrimidine photo-lyase [Halobacterium salinarum R1] Length = 462 Score = 304 bits (778), Expect = 3e-80, Method: Composition-based stats. Identities = 129/479 (26%), Positives = 206/479 (43%), Gaps = 32/479 (6%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 +HL W + DLR+ DN+ L+AA V+ V++ Q + + F+ A + + Sbjct: 1 MHLYWHQRDLRVPDNRGLHAA--TDGDTVVPVYVFDDTVLSQ--VGRPKRAFLAAGVRAL 56 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128 + + ++G + D+ L + + +F+ Y+ R + L Sbjct: 57 RAAYRERGSDLLVREG----DAESVLPALADEFDADTVFHAAHYDAARRNRRTRVADALA 112 Query: 129 HRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187 + D L+ P ++ + + Y + Q + PVPA Sbjct: 113 AAGVDTAGHVDHTLVDPATLDDAYPSHSQFYDDW---------QQAPKPDPVPAPDADAL 163 Query: 188 VTPSNIPRFFDYPFQAIDPMFP-IGEQNALHILRKFCKEKVYYYVEQRDIPAIQG----- 241 + A +P P G A L F + + Y + RD A Sbjct: 164 ADVHDDHTL---SVPAPEPPLPDAGHAAATDRLAAFLDDGIASYNDTRDDLAAAVDAPAS 220 Query: 242 -TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPS 300 S+LSPYL+ G + R+ W + + + D + EL WRE HL+ P Sbjct: 221 AVSRLSPYLAAGNIGVREVWAAVADAYDDATGNAARNIGKYRYELSWREQNYHLLYHTPR 280 Query: 301 VCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASF 360 + + ++ + I W +AW +G TG+P++DA MRQL G++HNR R + ASF Sbjct: 281 L-QTENYVSFDAPIAWQNSDDHFEAWTRGETGYPLVDAGMRQLRAEGYVHNRPRQVVASF 339 Query: 361 LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDP 420 L K LLVDWR GE +F +L+D D A+N WQW ASTG D+V RIF+P Q ++D Sbjct: 340 LTKHLLVDWRRGERHFADRLVDYDPANNAANWQWTASTGTDTV-AVRIFDPVSQMAKYDS 398 Query: 421 QGTFIRHWLPELNNVPTQYIHAPHSW--LDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477 F+ ++PEL V + I + + L+ +Y PIVD A + AA Sbjct: 399 DAAFVTEYVPELRGVDPETIVDWPTLRHSQRERLAPDYHHPIVDRDHAYERAQRVFEAA 457 >gi|294508369|ref|YP_003572427.1| deoxyribodipyrimidine photo-lyase [Salinibacter ruber M8] gi|294344697|emb|CBH25475.1| Deoxyribodipyrimidine photo-lyase [Salinibacter ruber M8] Length = 537 Score = 303 bits (777), Expect = 3e-80, Method: Composition-based stats. Identities = 115/491 (23%), Positives = 203/491 (41%), Gaps = 39/491 (7%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 +VW + DLR+ D++ L A V+ +++A P R I +L+++ Sbjct: 49 TQIVWYKRDLRVGDHRPLAEAADRG--PVLPLYVAEPSIAAGADYHPRHWTLIREALIEL 106 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEV-RRDKLLEKRL 127 + L+++G + E L+S +L+ + + RD+ + Sbjct: 107 RARLAKRGQPLIVR----CGEMPEVLESLRATAGPLRLWAHEETGNQRTHERDQRVRDWA 162 Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187 + + + +P ++ + ++ ++ + LV P A++ Sbjct: 163 RAHEVPFTE-----VPSRGVVRGPHDRDEWADRWKASMDRPLV------HPPDALQPVDS 211 Query: 188 VTPSNIPRFFDYPFQAI-DPMFPIGEQNALHILRKFCKEKVYYYVE--QRDIPAIQGTSQ 244 V P +P D + + IGE A L F +E+ Y R PA S+ Sbjct: 212 VAPGPMPSHADLGLRPSTAALQQIGEAEAHRTLDSFLRERGRNYRRAMSRPGPAQTECSR 271 Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAF-------SWLNELIWREFYRHLMAF 297 +S +L+ G +S R+ L+ +L A S+ + L W + + Sbjct: 272 ISVHLAYGTISLRRVVYELRRRQEELRGANGPDAAARRKALSSFDSRLHWHSHFTQKLED 331 Query: 298 YPSVCMGKPFIPWTEKIEWNK-DSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMI 356 P + + +IP + + + D L AW G TGFP++DA MR L GW++ R+R + Sbjct: 332 APRI-ENESYIPAFDALRADDWDPALYDAWLHGRTGFPMVDACMRHLRATGWLNFRMRAM 390 Query: 357 TASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGK 416 SF D +DWR + + D + Q +G + RI+NP QGK Sbjct: 391 LCSFAAYDCWLDWRRFAPTYGGLMADYVPGIHYPQVQMQ--SGTTGINRVRIYNPVKQGK 448 Query: 417 RFDPQGTFIRHWLPELNNVP-TQYIHAPHSW------LDKNDLSLNYPLPIVDHKKACHH 469 DP GTFIR W+PEL+++ T Y+HAP + +YP +VDH A HH Sbjct: 449 EQDPDGTFIRRWVPELSHLDTTAYVHAPWKMSPIEQQAAGCVIGKDYPERVVDHNDAYHH 508 Query: 470 TLNQYYAAKKQ 480 + + +++ Sbjct: 509 AQDAIHELRQR 519 >gi|261333249|emb|CBH16244.1| DNA repair enzyme, putative [Trypanosoma brucei gambiense DAL972] Length = 568 Score = 303 bits (777), Expect = 3e-80, Method: Composition-based stats. Identities = 147/556 (26%), Positives = 213/556 (38%), Gaps = 105/556 (18%) Query: 10 HLVWLRNDLRITDNKALYAACHNSDA---KVIAVFIATPEQWRQ---HGISARQSHFIYA 63 + R D R+TDN L + VI +F P Q F+ Sbjct: 23 AVFIFRRDFRVTDNTGLLLLIERAGKQSLPVIPLFFFNPRQCDPDKNPYFGKACFEFLCQ 82 Query: 64 SLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLL 123 SL + Q G + S+ D +E + S + +L +NR +RD L Sbjct: 83 SLKHLDT--VQLGGRLVCLRGSD-CDCLEVVRSSG--YDIKQLGFNRDITPFARKRDLQL 137 Query: 124 EKRLQHRVI--CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPA 181 E+ R + S D LLPP + N + Y+V++PF +A++Q P Sbjct: 138 EEWCVKRGVRCVTSNMDYTLLPPDVVTNKNGKPYRVFSPFYRAVLQEHFSDIQAPNPKAT 197 Query: 182 IRLT--------------------GPVTPSNIPRFFDY-PFQAIDPMFP-----IGEQNA 215 + DY A+ FP G Sbjct: 198 TIGDIFTGSHVKEDVKATVDQARRSAMAADEFSSLVDYVDLAALPQTFPELVDRGGRSEG 257 Query: 216 LHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPK 275 L L K Y RD T+ LSP+L G +S R+ + + Sbjct: 258 LLRLASVASAK--NYSAIRDDIPGDKTTHLSPHLKFGTISIREAM--------QVALLHL 307 Query: 276 SGAFSWLNELIWREFYRHLMAFYPSVCMG--------------------KPFIPWTEKIE 315 ++ +LIWREFY L+ P + +G +PF+ + Sbjct: 308 GKEHAFTRQLIWREFYSMLLYHNPRLALGQLKMDVALQGERQCRATLANEPFLEKYSNFQ 367 Query: 316 WNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEY 375 W + A+K G TGFP++DAA+R L GW HNR RM+ A+FLVK L VDWR GE + Sbjct: 368 WEWNDAEFTAFKSGATGFPLVDAAVRCLTKTGWCHNRCRMLIANFLVKVLFVDWREGERW 427 Query: 376 FMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNV 435 + + +D D+A+N+GGW W++ G D+ PYFR FNP Q + DPQ FI+ W+PEL NV Sbjct: 428 YATVAVDYDVANNSGGWLWSSGQGADAQPYFRFFNPFRQSAQHDPQAVFIKQWVPELRNV 487 Query: 436 PTQYIHAPHSWLDKNDLSLN-----------------------------------YPLPI 460 + IH K + YP PI Sbjct: 488 SVRTIHK-WDVFCKEGRPADEGTLGTVQGTVKESNGIKKEKTELPLGGSIVGGSAYPSPI 546 Query: 461 VDHKKACHHTLNQYYA 476 VD K+ + +Y Sbjct: 547 VDLKQRTKWIVERYKK 562 >gi|297582490|ref|YP_003698270.1| deoxyribodipyrimidine photo-lyase [Bacillus selenitireducens MLS10] gi|297140947|gb|ADH97704.1| Deoxyribodipyrimidine photo-lyase [Bacillus selenitireducens MLS10] Length = 512 Score = 303 bits (777), Expect = 4e-80, Method: Composition-based stats. Identities = 122/471 (25%), Positives = 191/471 (40%), Gaps = 21/471 (4%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 V++VWL+ DLRI D++ L A + V+ +F+ W +S R F+ SL ++ Sbjct: 2 VNVVWLKRDLRIFDHRPLKEAAEQGE--VLPLFVWEASVWAHGDLSVRHRDFVLQSLAEL 59 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYE-INEVRRDKLLEKRL 127 + L Q+G + + I+ L +LF + + RD + + Sbjct: 60 DRRLDQRGARLY----TAVGEVIDVLTRLEADLGPFQLFAHEENGTPLTFERDIAVRNWM 115 Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187 + R + G L K Y + A + +A PA G Sbjct: 116 KARGCTMKEWPHFGVTRG--LKSRDDFQKGYERYVNAPVVPAPEAVRGIRHAPAWLTKGA 173 Query: 188 VTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIP--AIQGTSQL 245 P I P AI GE+ A +L+ F +E+ Y + P + + S+L Sbjct: 174 GEPGGIA----LPGTAITRGQQGGERLAHGVLKGFLEERFKAYQVRISKPFASAESCSRL 229 Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIK-PKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304 SPYL+ G LS R + +L K ++L+ L W + + P + Sbjct: 230 SPYLAWGNLSVRYTYQETVARLGELGSGFHKKQLSAFLSRLHWHCHFIQRLEDEPEIA-H 288 Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364 + P + + Q W G TG P+IDAAMR L+ GW++ R R + SF+ Sbjct: 289 RTMNPVFDTVRQTWSEEAYQRWLHGRTGIPLIDAAMRCLHETGWLNFRSRAMVISFVCNT 348 Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424 L++DWR E LD + + Q G RI+NP QG+ DP G F Sbjct: 349 LMLDWRRPAEDLSRLFLDYEPGIHYSQVQMQ--AGTTGFNTIRIYNPVKQGQEHDPSGAF 406 Query: 425 IRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYY 475 +R ++PEL+ V +IH P W YP+P+VD KA + Sbjct: 407 VRRFVPELSAVSDAFIHEP--WKLPAGPPKGYPMPMVDVAKANGEARRILW 455 >gi|299821147|ref|ZP_07053035.1| deoxyribodipyrimidine photo-lyase [Listeria grayi DSM 20601] gi|299816812|gb|EFI84048.1| deoxyribodipyrimidine photo-lyase [Listeria grayi DSM 20601] Length = 457 Score = 303 bits (777), Expect = 4e-80, Method: Composition-based stats. Identities = 150/480 (31%), Positives = 236/480 (49%), Gaps = 42/480 (8%) Query: 9 VHL-VWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67 + L V L R N L++ + +K+ A + P G S R+ F + ++ Q Sbjct: 1 MQLGVLLNRVFRTKHNP-LFSYVEQNRSKIDACYFIIP-LEDLKGASERKKAFYFGTVNQ 58 Query: 68 VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKL--------FYNRQYEINEVRR 119 L++ I F + E L +C +Q++ + ++ +Y+I R Sbjct: 59 FLTELAKYEIR-------PFLVTYEKLPEFCQKQKIDTILMAGDIMSYHQEEYDIRHQR- 110 Query: 120 DKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPV 179 EK + K+ P + + + YKV+TPF KA ++ + + Sbjct: 111 ----EKLTAAGLEIKTIRVQHYFHPRATFKNGDEPYKVFTPFYKANRPHVTIQKPAAYSL 166 Query: 180 PAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAI 239 +L+ YP + E+ A+ + F E + Y R++ A Sbjct: 167 K--QLSEITVTGTGHLDHSYPDDGLS------EEQAVANWQTFLNESIEAYETNREVLAE 218 Query: 240 QGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYP 299 TS LS YL+ G++ +Q +N+L ++ + +++ EL++REFY LM YP Sbjct: 219 IKTSWLSVYLAYGLIDIQQIFNQLLDQ----REANEKNYEAFIRELLFREFYYVLMVTYP 274 Query: 300 SVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITAS 359 + + F P +IEW+ + + WK G TG+PI+DAAM++LN G+MHNR+RM+ + Sbjct: 275 EMAT-QSFKPNYRQIEWSLNKANFERWKNGETGYPIVDAAMQELNQTGYMHNRMRMVVSQ 333 Query: 360 FLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFD 419 FL KDL +DWR GE+YF SQL+D D ASN GWQW+ASTG D+VPYFR+FNP Q +RFD Sbjct: 334 FLTKDLFIDWRWGEDYFRSQLIDYDNASNVNGWQWSASTGTDAVPYFRMFNPIRQSERFD 393 Query: 420 PQGTFIRHWLPELNNVPTQYIHAPHSWLDK------NDLSLNYPLPIVDHKKACHHTLNQ 473 G +I+ +LP VP Y+H K +L YP PIVDHK++ + + Sbjct: 394 QDGAYIKQYLPIFKAVPAAYLHDTEKNKAKLAAECDIELGKTYPAPIVDHKQSRQAIMEK 453 >gi|71748528|ref|XP_823319.1| deoxyribodipyrimidine photolyase [Trypanosoma brucei TREU927] gi|70832987|gb|EAN78491.1| deoxyribodipyrimidine photolyase, putative [Trypanosoma brucei] Length = 568 Score = 303 bits (776), Expect = 4e-80, Method: Composition-based stats. Identities = 147/556 (26%), Positives = 213/556 (38%), Gaps = 105/556 (18%) Query: 10 HLVWLRNDLRITDNKALYAACHNSDA---KVIAVFIATPEQWRQ---HGISARQSHFIYA 63 + R D R+TDN L + VI +F P Q F+ Sbjct: 23 AVFIFRRDFRVTDNTGLLLLIERAGKQSLPVIPLFFFNPRQCDPDKNPYFGKACFEFLCQ 82 Query: 64 SLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLL 123 SL + Q G + S+ D +E + S + +L +NR +RD L Sbjct: 83 SLKHLDT--VQLGGRLVCLRGSD-CDCLEVVRSSG--YDIKQLGFNRDITPFARKRDLQL 137 Query: 124 EKRLQHRVI--CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPA 181 E+ R + S D LLPP + N + Y+V++PF +A++Q P Sbjct: 138 EEWCVKRGVRCVTSNMDYTLLPPDVVTNKNGKPYRVFSPFYRAVLQEHFSDIQAPNPKAT 197 Query: 182 IRLT--------------------GPVTPSNIPRFFDY-PFQAIDPMFP-----IGEQNA 215 + DY A+ FP G Sbjct: 198 TIGDIFTGSHVKEDVKATVDQARRSAMAADEFSSLVDYVDLAALPQTFPELVDRGGRSEG 257 Query: 216 LHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPK 275 L L K Y RD T+ LSP+L G +S R+ + + Sbjct: 258 LLRLASVASAK--NYSAIRDDIPGDKTTHLSPHLKFGTISIREAM--------QVALLHL 307 Query: 276 SGAFSWLNELIWREFYRHLMAFYPSVCMG--------------------KPFIPWTEKIE 315 ++ +LIWREFY L+ P + +G +PF+ + Sbjct: 308 GKEHAFTRQLIWREFYSMLLYHNPRLALGQLKMDVAPQGERQCRATLANEPFLEKYSNFQ 367 Query: 316 WNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEY 375 W + A+K G TGFP++DAA+R L GW HNR RM+ A+FLVK L VDWR GE + Sbjct: 368 WEWNDAEFTAFKSGATGFPLVDAAVRCLTKTGWCHNRCRMLIANFLVKVLFVDWREGERW 427 Query: 376 FMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNV 435 + + +D D+A+N+GGW W++ G D+ PYFR FNP Q + DPQ FI+ W+PEL NV Sbjct: 428 YATVAVDYDVANNSGGWLWSSGQGADAQPYFRFFNPFRQSAQHDPQAVFIKQWVPELRNV 487 Query: 436 PTQYIHAPHSWLDKNDLSLN-----------------------------------YPLPI 460 + IH K + YP PI Sbjct: 488 SVRTIHK-WDVFCKEGRPADQGTLGTVQGTVKESNGIKKEKTELPLGGSIVGGSAYPSPI 546 Query: 461 VDHKKACHHTLNQYYA 476 VD K+ + +Y Sbjct: 547 VDLKQRTKWIVERYKK 562 >gi|312371404|gb|EFR19605.1| hypothetical protein AND_22153 [Anopheles darlingi] Length = 608 Score = 303 bits (776), Expect = 4e-80, Method: Composition-based stats. Identities = 122/518 (23%), Positives = 196/518 (37%), Gaps = 49/518 (9%) Query: 7 MSVH-LVWLRNDLRITDNKALYAA----CHNSDAKV--IAVFIATPEQWRQHGISARQSH 59 M+++ ++W R+ LR+ DN +L A C +S+ V VFI E + + Sbjct: 62 MTINNILWFRHGLRLHDNPSLLEALKSDCQSSNEPVKLFPVFIFDGESAGTRVVGYNRMK 121 Query: 60 FIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRR 119 F+ SL + + + G + DS L + + KL + + E R Sbjct: 122 FLLESLADLDRQFRELGGQLLVFRG----DSETVLRRLFEELNIKKLCFEQDCEPIWRER 177 Query: 120 DKLLEKRLQH-RVICKSFDDSVLLPPGSILNHALQ-MYKVYTPFRKALIQNLVQADLRSL 177 D+ + K + V C L P ++ Y F + Sbjct: 178 DERVTKLCETMDVKCVENVSHTLWNPNEVIQTNGDIPPLTYQMFLHTVDIIGEPPRPVGA 237 Query: 178 PVPAIRLTGPVT-----------------PSNIPRFFDYPFQAIDPMFPIGEQNALHILR 220 P G + P +D + GE AL L Sbjct: 238 PDFEFIEFGRIPAILASELKLYQQQHMPGPEEFGLTYDGNADIAFQKWIGGETRALESLG 297 Query: 221 KFCKE-----KVYYYVEQRDIPAIQGT-SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKP 274 K+ + YY+ + P I G + +S L G LS R + + + F + Sbjct: 298 ARLKQEEEAFREGYYLPTQAKPEILGPATSMSAALRFGCLSVRMFYWCVHDLFAKVQASS 357 Query: 275 K---SGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKD-SHLLQAWKQGY 330 + +LIWRE++ + P P I W + L WK+G Sbjct: 358 QFKCPIGQHITGQLIWREYFYTMSVRNPHYGEM-DRNPICLNIPWYEPVDDSLVRWKEGR 416 Query: 331 TGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNN 389 TGFP+IDAAMRQL GW+H+ LR ITA+FL + L + W G ++F+ LLD D + Sbjct: 417 TGFPLIDAAMRQLLAEGWLHHILRNITATFLTRGGLWISWEAGLQHFLKYLLDADWSVCA 476 Query: 390 GGWQWAASTGNDS-VPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLD 448 G W W +S+ + + + P R DP G +++ ++PEL N P +H P Sbjct: 477 GNWMWVSSSAFERLLDSSKCTCPVALAYRLDPTGDYVKRYVPELVNYPAHLVHEPWKATK 536 Query: 449 KNDLSLN------YPLPIVDHKKACHHTLNQYYAAKKQ 480 + L YP P+VD + +++ Sbjct: 537 EEQLEYGCTIGQQYPAPMVDLNVVAKRNAHAMSKLREE 574 >gi|158301399|ref|XP_321104.4| AGAP001958-PA [Anopheles gambiae str. PEST] gi|205696380|sp|Q7PYI7|CRY1_ANOGA RecName: Full=Cryptochrome-1; Short=agCRY1 gi|78191295|gb|ABB29886.1| cryptochrome 1 [Anopheles gambiae] gi|157012451|gb|EAA01270.4| AGAP001958-PA [Anopheles gambiae str. PEST] Length = 545 Score = 303 bits (776), Expect = 4e-80, Method: Composition-based stats. Identities = 124/517 (23%), Positives = 202/517 (39%), Gaps = 48/517 (9%) Query: 7 MSVH-LVWLRNDLRITDNKALYAACHNS-------DAKVIAVFIATPEQWRQHGISARQS 58 M+++ ++W R+ LR+ DN +L A + K+ +FI E + + Sbjct: 1 MTINNILWFRHGLRLHDNPSLLEALKSDCVNQSSEAVKLFPIFIFDGESAGTRIVGYNRM 60 Query: 59 HFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVR 118 F+ SL + + G + DS+ L + + KL Y + E Sbjct: 61 KFLLESLADLDRQFRDLGGQLLVFRG----DSVTVLRRLFEELNIKKLCYEQDCEPIWKE 116 Query: 119 RDKLLEKRLQH-RVICKSFDDSVLLPPGSILNHALQ-MYKVYTPFRKALIQNLVQADLRS 176 RD + K + V C L P ++ Y F + Sbjct: 117 RDDAVAKLCRTMDVRCVENVSHTLWNPIEVIQTNGDIPPLTYQMFLHTVNIIGDPPRPVG 176 Query: 177 LPVPAIRLTGPVT---------------PSNIPRFFDYPFQAIDPMFPIGEQNALHILRK 221 P G V P + +D + + GE AL L Sbjct: 177 APNFEYVEFGRVPALLASELKLCQQMPAPDDFGIHYDGNARIAFQKWIGGETRALEALGA 236 Query: 222 FCKE-----KVYYYVEQRDIPAIQGT-SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPK 275 K+ + YY+ + P I G + +S L G LS R + + + F + + Sbjct: 237 RLKQEEEAFREGYYLPTQAKPEILGPATSMSAALRFGCLSVRMFYWCVHDLFAKVQSNSQ 296 Query: 276 ---SGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHL-LQAWKQGYT 331 G +LIWRE++ + P + P I W K L WK+G T Sbjct: 297 FKYPGGHHITGQLIWREYFYTMSVQNPHYGEME-RNPICLNIPWYKPEDDSLTRWKEGRT 355 Query: 332 GFPIIDAAMRQLNTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNG 390 GFP+IDAAMRQL GW+H+ LR ITA+FL + L + W G ++F+ LLD D + G Sbjct: 356 GFPMIDAAMRQLLAEGWLHHILRNITATFLTRGGLWLSWEEGLQHFLKYLLDADWSVCAG 415 Query: 391 GWQWAASTGNDS-VPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDK 449 W W +S+ + + + P +R DP+G +++ +LPEL N P Q++H P + Sbjct: 416 NWMWVSSSAFERLLDSSKCTCPIALARRLDPKGDYVKRYLPELANYPAQFVHEPWKASRE 475 Query: 450 ND------LSLNYPLPIVDHKKACHHTLNQYYAAKKQ 480 + YP P+VD + + +++ Sbjct: 476 QQIEYGCVIGEKYPAPMVDLAIVSKRNAHTMASLREK 512 >gi|255083581|ref|XP_002508365.1| predicted protein [Micromonas sp. RCC299] gi|226523642|gb|ACO69623.1| predicted protein [Micromonas sp. RCC299] Length = 488 Score = 303 bits (775), Expect = 5e-80, Method: Composition-based stats. Identities = 125/498 (25%), Positives = 199/498 (39%), Gaps = 61/498 (12%) Query: 11 LVWLRNDLRITDNKALYAA----CHNSDAKVIAVFIATPEQ-----WRQHGISARQSHFI 61 +VW RNDLR+ DN A+ A + V+ +++ P W + F Sbjct: 3 VVWFRNDLRLQDNYAVKQAESIATRTAGCDVLPLYVFDPRTFAPSSWGSPKCGGHRGRFQ 62 Query: 62 YASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDK 121 S+L ++++L G + ++L + N + E+R D Sbjct: 63 LESVLNLKRNLRAIGSDLLVAVGKPEEVIPKYLLDAPGAK-------NEEVCSEELRVDA 115 Query: 122 LLEKRLQHRVICKSF---DDSVLLPPGSILNH--ALQMYKVYTPFRKALIQNLVQADLRS 176 ++ ++ S L + A + V+TPFR + + Sbjct: 116 KVKSAVKSAGNLNRLDKIWGSTLYHKDDLPFRSDASDLPDVFTPFRNKVESKSEPREPVP 175 Query: 177 LPVPAIRLTGPVTPSNI---PRFFDYPFQAIDPM--------------FPIGEQNALHIL 219 P P D PF D F GE AL + Sbjct: 176 PPAKGALPVPSDMTEAFAFEPTVADLPFANEDERAIAAAGAHPDGVLPFEGGESAALARV 235 Query: 220 RKFCKE--KVYYYVEQRD-IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKS 276 R + E K+ Y E R+ + +S+L+P+L+ G +SPRQ +++ + Sbjct: 236 RYYVWESEKIATYFETRNGMLGGDYSSKLAPWLAHGCVSPRQVVAEVRKFESQRV--ENK 293 Query: 277 GAFSWLNELIWREFYRHLMAFYPSVCMG---------KPFIPWTEKIEWNKDSHLLQAWK 327 + + ELIWR+F++ + + W D L AWK Sbjct: 294 STYWLIFELIWRDFFKFFALKHGNAIFFSEGTAGGKMGGAGYKGGAGPWRDDPAALAAWK 353 Query: 328 QGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLAS 387 +G TG+P++DA MR+L G+M NR R AS+L D VDWR+G E+F ++LLD D ++ Sbjct: 354 EGKTGYPLVDANMRELAATGFMSNRGRQNVASWLALDAGVDWRLGAEWFENKLLDYDCSA 413 Query: 388 NNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWL 447 N G W AA V FN Q K +DP+G +I++W+PEL VP +YI P Sbjct: 414 NWGNWVAAAGMTGGRVNK---FNIAKQTKDYDPEGEYIKYWVPELRKVPAKYIAEPRQMP 470 Query: 448 ------DKNDLSLNYPLP 459 + ++YP P Sbjct: 471 GDVAQSAGCVIGVDYPAP 488 >gi|97047673|sp|Q84KJ5|CRYD_ARATH RecName: Full=Cryptochrome DASH, chloroplastic/mitochondrial; AltName: Full=Cryptochrome-3; Flags: Precursor Length = 569 Score = 303 bits (775), Expect = 5e-80, Method: Composition-based stats. Identities = 118/460 (25%), Positives = 208/460 (45%), Gaps = 25/460 (5%) Query: 4 TTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGI------SARQ 57 V ++W RNDLR+ DN ALY A +SD ++ V+ P + A + Sbjct: 80 RKGKGVTILWFRNDLRVLDNDALYKAWSSSDT-ILPVYCLDPRLFHTTHFFNFPKTGALR 138 Query: 58 SHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEV 117 F+ L+ ++K+L ++G+ E L S +F +++ EV Sbjct: 139 GGFLMECLVDLRKNLMKRGLNLLIRSGKPE----EILPSLAKDFGARTVFAHKETCSEEV 194 Query: 118 RRDKLLEKRLQHRV---ICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADL 174 ++L+ + L+ + S + + + VYT FRK++ Sbjct: 195 DVERLVNQGLKRVGNSTKLELIWGSTMYHKDDLPFDVFDLPDVYTQFRKSVEAKCSIRSS 254 Query: 175 RSLPVPAIRLTGPVTPSNIPRFFDYPFQAID----PMFPIGEQNALHI-LRKFCK-EKVY 228 +P+ ++P + + F GE + F K + + Sbjct: 255 TRIPLSLGPTPSVDDWGDVPTLEKLGVEPQEVTRGMRFVGGESAGVGRVFEYFWKKDLLK 314 Query: 229 YYVEQRD-IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIW 287 Y E R+ + +++ SP+L+ G +SPR + ++ + + + + L ELIW Sbjct: 315 VYKETRNGMLGPDYSTKFSPWLAFGCISPRFIYEEVQRYEKERV--ANNSTYWVLFELIW 372 Query: 288 REFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIG 347 R+++R L + P + +W++D L ++W+ TG+P+IDA M++L+T G Sbjct: 373 RDYFRFLSIKCGNSLFHLGG-PRNVQGKWSQDQKLFESWRDAKTGYPLIDANMKELSTTG 431 Query: 348 WMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFR 407 +M NR R I SFLV+D+ +DWR+G E+F + LLD D SN G W + A GND R Sbjct: 432 FMSNRGRQIVCSFLVRDMGLDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGNDPRE-DR 490 Query: 408 IFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWL 447 F+ Q + +DP+G ++ WL +L +P + H P + Sbjct: 491 YFSIPKQAQNYDPEGEYVAFWLQQLRRLPKEKRHWPGRLM 530 >gi|86131288|ref|ZP_01049887.1| DNA photolyase/cryptochrome, animal cryptochrome and (6-4) photolyase subfamily [Dokdonia donghaensis MED134] gi|85818699|gb|EAQ39859.1| DNA photolyase/cryptochrome, animal cryptochrome and (6-4) photolyase subfamily [Dokdonia donghaensis MED134] Length = 494 Score = 302 bits (774), Expect = 6e-80, Method: Composition-based stats. Identities = 102/492 (20%), Positives = 185/492 (37%), Gaps = 30/492 (6%) Query: 3 ATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIY 62 + + + + W + DLR+ DN+ L+ A +S+ VI ++I P S R +FI Sbjct: 2 SKSKSHITVHWFKRDLRLQDNENLWQALQHSE-PVILLYIFEPSLLDDEHYSERHFNFIK 60 Query: 63 ASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKL 122 SL +Q L Q + I + +++ + + Sbjct: 61 ESLQDLQSRLENYDTKILVVQG----EVIPVFKKLQQHYTIKRVYSHVETG--------- 107 Query: 123 LEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAI 182 + K + K + S + +N+ ++ + + R + Sbjct: 108 IRKTYDRDIAFKVYQQSQDIRWIQFINNGVRRSLSNRVGWVQGWEWWMTEPQRIFVPQSG 167 Query: 183 RLTGPVTPSNIPRFFD---YPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIP-- 237 L ++FD G L F ++++ Y P Sbjct: 168 DLVTKKEVEVFEQYFDCVSLQTPENTAFQKGGTTMGLRYYDSFLRDRIKNYNAHISKPLL 227 Query: 238 AIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAF 297 A + S+LSPY++ G LS R+ W R K+ K + + + L W + Sbjct: 228 ARKSCSRLSPYIAWGNLSVREVWQRAKKLRQASPYKRQ--IDGFTSRLRWSAHFIQKFE- 284 Query: 298 YPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMIT 357 ++ + +AW++G TG+P++DA MR L G+++ R+R +T Sbjct: 285 MEDTMEFVSVNRGFHSLKKVSNPVYAKAWQEGKTGYPLVDACMRCLVETGYLNFRMRALT 344 Query: 358 ASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKR 417 SF +L W+ + Q LD + + Q G + RI+NP Sbjct: 345 LSFFTHNLWQPWQDASAFLARQFLDFEPGIHYPQIQMQ--AGETGINMLRIYNPVKNSYE 402 Query: 418 FDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND------LSLNYPLPIVDHKKACHHTL 471 DP+G FI+ W+PEL VP YIH P + + +YP PIV+ K+ + Sbjct: 403 HDPEGEFIKKWIPELREVPLSYIHEPWTMSLLEQQFCNTTIGKDYPAPIVNIKETQKYAT 462 Query: 472 NQYYAAKKQSLL 483 + + K++ + Sbjct: 463 DTMWKYKERPAV 474 >gi|119468403|ref|ZP_01611494.1| putative deoxyribodipyrimidine photolyase [Alteromonadales bacterium TW-7] gi|119447911|gb|EAW29176.1| putative deoxyribodipyrimidine photolyase [Alteromonadales bacterium TW-7] Length = 509 Score = 302 bits (774), Expect = 6e-80, Method: Composition-based stats. Identities = 102/487 (20%), Positives = 194/487 (39%), Gaps = 32/487 (6%) Query: 8 SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67 +++VW + DLR++D++ L +A ++ + ++ P + R F+Y S++ Sbjct: 4 KINIVWFKRDLRLSDHQPLKSAF-DTGLPTLLIYNFEPLLLEDAHYNERHWRFVYQSIVD 62 Query: 68 VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEV-RRDKLLEKR 126 + L++ + ++ L Q ++ +F +++ +N RD ++ Sbjct: 63 LNSQLARFNAKVY----TFNENMQTLLQKLNGQFEISYIFSHQEIGLNNTFERDLAIKAW 118 Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 H I P G+++ ++K + L + +++ ++ Sbjct: 119 CHHNHINWQES-----PTGAVIRGKKNRDNWNERWQKTMQAPLAIPNWKNVNSVKLKNYK 173 Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGT--SQ 244 D FQ G +A +++ F ++ Y + P++ T S+ Sbjct: 174 NPELPETYTQDDDNFQ------QGGPLHAREVMQSFFTQRGKGYQKGISSPSLSRTHCSR 227 Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304 LSPYL+ G +S RQ + + + K + ++ H M + S C Sbjct: 228 LSPYLAWGNISLRQVYQTAIDAYHSNHPDKKGWKRPLAAFVSRLHWHCHFMQKFESECTM 287 Query: 305 --KPFIPWTEKIEWNKDSH---LLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITAS 359 K P + D H ++ W QG TG PIIDA MR L G+++ R+R + S Sbjct: 288 EFKALNPGYHSFPYRTDKHVKHDIERWAQGQTGVPIIDACMRCLKATGYINFRMRAMLVS 347 Query: 360 FLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFD 419 F+ L + W+ + LD + + Q AS + R +NP Q + D Sbjct: 348 FVTHHLNISWQQASFPLANYFLDFEPGIHYPQIQMQASVT--GINTIRHYNPIKQSEDQD 405 Query: 420 PQGTFIRHWLPELNNVPTQYIHAPHSWLDKN------DLSLNYPLPIVDHKKACHHTLNQ 473 P G FI+ W PEL +P +Y+H P L +YP P++D A + Sbjct: 406 PTGAFIKKWCPELEKLPIEYLHEPWEQTPMEALFNDFKLGEDYPEPMLDLTLASKDARER 465 Query: 474 YYAAKKQ 480 + + + Sbjct: 466 LWQYRDR 472 >gi|54025035|ref|YP_119277.1| putative deoxyribodipyrimidine photolyase [Nocardia farcinica IFM 10152] gi|54016543|dbj|BAD57913.1| putative deoxyribodipyrimidine photolyase [Nocardia farcinica IFM 10152] Length = 436 Score = 302 bits (774), Expect = 7e-80, Method: Composition-based stats. Identities = 137/458 (29%), Positives = 208/458 (45%), Gaps = 35/458 (7%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 + DLR+ DN L AA DA V+ +F+ ++ F+ A++ ++ Sbjct: 2 TAIALFTRDLRVHDNPVLAAARDAGDA-VVPLFVID-AHLVPDRCPPNRARFLAAAVREL 59 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128 L +G + D+ +D + + R L +RL Sbjct: 60 DAELRTRGGRLIVRRGVVADEVARVVD----ETGARTVHLADDVSGYSAARADALRERLD 115 Query: 129 HRVI-CKSFDDSVLLPPGSILNHA--LQMYKVYTPFRKALIQNLVQADLRS---LPVPAI 182 R + + S+ G +L A + V+TP+ + + +A L L VP + Sbjct: 116 RRGVRLEPHPASITTVDGDVLRPATGRDHFAVFTPYFRRWSEVPRRAPLPPPEDLEVPDL 175 Query: 183 RLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGT 242 TP ++ R P ++ GE +L + V YVE D A T Sbjct: 176 PSAALPTPESLNRGEPSPQLSV-----GGETTGRALLDSWLAGPVDDYVETGDDLAADAT 230 Query: 243 SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVC 302 S LSPYL G LSP + +R+ +G ++ +L WR+F+ L+A P+V Sbjct: 231 SHLSPYLHFGCLSPTELLHRV--------DVGSAGGQAFARQLAWRDFHHQLLAARPAVA 282 Query: 303 MGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLV 362 + P I W D L AW+ TG+PI+DAA+RQL+T GW+ NR R+I A+FL Sbjct: 283 RH-DYRP--RPIRWRDDPQALAAWRSARTGYPIVDAALRQLHTEGWLPNRARLIAAAFLT 339 Query: 363 KDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQG 422 K L + WR G +F+ L+D DLA+N WQW A TG+D+ P R FNP Q R+DP G Sbjct: 340 KTLGLHWRAGAGHFLHWLVDADLANNQLNWQWVAGTGSDTRP-NRGFNPLRQADRYDPDG 398 Query: 423 TFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPI 460 ++R W+PEL ++ IH P ++YP PI Sbjct: 399 VYVRRWIPELADLDGGRIHRPWRA------EVDYPSPI 430 >gi|260220871|emb|CBA28870.1| hypothetical protein Csp_A09300 [Curvibacter putative symbiont of Hydra magnipapillata] Length = 529 Score = 302 bits (774), Expect = 7e-80, Method: Composition-based stats. Identities = 100/489 (20%), Positives = 186/489 (38%), Gaps = 29/489 (5%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 MS +VW + DLR D+ L A + V+ ++ P W Q S + HF L Sbjct: 16 MSYSVVWFKRDLRTHDHAPLKQALQSG--PVLCLYCIEPTLWAQPDASTQHYHFALECLR 73 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINE-VRRDKLLEK 125 + L + G+ Q D+ E L + ++ + + + RD+ + + Sbjct: 74 DLWVQLKELGLRLQL----VAGDAPEVLARLHAKAPFMAIYSHEETGNDASYARDRAVSR 129 Query: 126 RLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185 + + + D ++ + + + + + + V D SL ++ L Sbjct: 130 WCKAQGV-----DWHQYKQFGVVRGVVNRDVWHLQWTEHMSGSQVSLD-GSLHAVSVELP 183 Query: 186 GPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIP--AIQGTS 243 + + G A +L+ F ++ Y P A + S Sbjct: 184 WDASKPPVATSLGLEGTDKPQRQVGGRARAEQVLQSFLTDRSARYRGGISSPLSASEACS 243 Query: 244 QLSPYLSIGVLSPRQCWNRLKE---EFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPS 300 +LSPYL++G LS R+ ++E + + ++G S+ + L W + + P Sbjct: 244 RLSPYLALGCLSVREVVQAVQEVQGARGEGRKRHQAGLRSFTSRLHWHCHFIQKLESEPD 303 Query: 301 VCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASF 360 + + E + L+ G TG+P++DA + L GW++ R+R + S Sbjct: 304 IEFRNMHRGYDGLREAEHNPEHLKVLMAGRTGWPLVDACIAMLRETGWVNFRMRAMIVSI 363 Query: 361 LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDP 420 L + WR E+ + LD + + Q +G + RI+NP Q + DP Sbjct: 364 AAYPLWLHWRPVGEWLAREFLDYEPGIHWSQLQMQ--SGTTGINIPRIYNPIKQARDQDP 421 Query: 421 QGTFIRHWLPELNNVPTQYIHAPHSW---------LDKNDLSLNYPLPIVDHKKACHHTL 471 G F+R WLP + VP ++ P L + + P P VD + A Sbjct: 422 DGQFVRRWLPAMRKVPDAWLFEPWRMPLGMQSRLGLTVDGPEPDIPQPSVDLEAATRAAK 481 Query: 472 NQYYAAKKQ 480 + + + Q Sbjct: 482 KRLFELRAQ 490 >gi|83816774|ref|YP_446431.1| deoxyribodipyrimidine photolyase, putative [Salinibacter ruber DSM 13855] gi|83758168|gb|ABC46281.1| deoxyribodipyrimidine photolyase, putative [Salinibacter ruber DSM 13855] Length = 537 Score = 302 bits (774), Expect = 8e-80, Method: Composition-based stats. Identities = 115/491 (23%), Positives = 202/491 (41%), Gaps = 39/491 (7%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 +VW + DLR+ D++ L A V+ +++A P R I +L+++ Sbjct: 49 TQIVWYKRDLRVGDHRPLAEAADRG--PVLPLYVAEPSIAAGADYHPRHWTLIREALIEL 106 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEV-RRDKLLEKRL 127 + L+++G + E L+S +L+ + + RD+ + Sbjct: 107 RARLAKRGQPLVVR----CGEMPEVLESLRATAGPLRLWAHEETGNQRTHERDQRVRDWA 162 Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187 + + + +P ++ + + ++ + LV P A++ Sbjct: 163 RAHEVPFTE-----VPSRGVVRGPHDRDEWADQWEASMDRPLV------HPPDALQPVDS 211 Query: 188 VTPSNIPRFFDYPFQAI-DPMFPIGEQNALHILRKFCKEKVYYYVE--QRDIPAIQGTSQ 244 V P +P D + + IGE A L F +E+ Y R PA S+ Sbjct: 212 VAPGPMPSHADLGLRPSTAALQQIGEAEAHRTLDSFLRERGRSYRRAMSRPGPAQTECSR 271 Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAF-------SWLNELIWREFYRHLMAF 297 +S +L+ G +S R+ L+ +L A S+ + L W + + Sbjct: 272 ISVHLAYGTISLRRVVYELRRRQEELRGANGPDAAARRKALSSFDSRLHWHSHFTQKLED 331 Query: 298 YPSVCMGKPFIPWTEKIEWNK-DSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMI 356 P + + +IP + + + D L AW G TGFP++DA MR L GW++ R+R + Sbjct: 332 APRI-ENESYIPAFDALRADDWDPALYDAWLHGRTGFPMVDACMRHLRATGWLNFRMRAM 390 Query: 357 TASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGK 416 SF D +DWR + + D + Q +G + RI+NP QGK Sbjct: 391 LCSFAAYDCWLDWRRFAPTYGGLMADYVPGIHYPQVQMQ--SGTTGINRVRIYNPVKQGK 448 Query: 417 RFDPQGTFIRHWLPELNNVP-TQYIHAPHSW------LDKNDLSLNYPLPIVDHKKACHH 469 DP GTFIR W+PEL+++ T Y+HAP + +YP +VDH A HH Sbjct: 449 EQDPDGTFIRRWVPELSHLDTTAYVHAPWKMSPIEQQAAGCVIGKDYPERVVDHNDAYHH 508 Query: 470 TLNQYYAAKKQ 480 + + +++ Sbjct: 509 AQDAIHELRQR 519 >gi|195107460|ref|XP_001998330.1| GI23904 [Drosophila mojavensis] gi|193914924|gb|EDW13791.1| GI23904 [Drosophila mojavensis] Length = 539 Score = 302 bits (774), Expect = 8e-80, Method: Composition-based stats. Identities = 122/515 (23%), Positives = 210/515 (40%), Gaps = 50/515 (9%) Query: 10 HLVWLRNDLRITDNKALYAACHNSDAKV--IAVFIATPEQWRQHGISARQSHFIYASLLQ 67 +++W R+ LR+ DN A+ AA N D V I +FI E + + F+ SL Sbjct: 7 NVIWFRHGLRLHDNPAMLAALSNKDQGVALIPIFIFDGESAGTKNVGYNRMRFLLDSLQD 66 Query: 68 VQKSLSQ----KGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLL 123 + + L + +G + + + K+ + E RD+ + Sbjct: 67 IDRQLQEATEGRGGLLICE-----GQPVHIFRRLHEHVGLHKICVEQDCEPIWNERDEAV 121 Query: 124 EKRLQHRVICKSFD-DSVLLPPGSILNHALQMYKVYT------------PFRKALIQNLV 170 + + I L P ++++ + + P R N Sbjct: 122 KSLCRELGIEYVEKVSHTLWDPRTVIDTNGGIAPLTYQMFLHTVQIIGLPPRPVRDPNFE 181 Query: 171 QADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPM----FPIGEQNALHILRKFCKEK 226 L G + P F+ + + + GE AL +L + K + Sbjct: 182 GVKFVQLSPELRHDIGCFEMTPTPEHFNVYSDNMGYLAKINWVGGETQALLLLGERLKVE 241 Query: 227 VY-----YYVEQRDIPAIQGTSQ-LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPK----- 275 + YY+ + +P I T + +S +L G LS R+ + + + F ++ ++ Sbjct: 242 QHAFERGYYLPNQAMPNILDTPKSMSAHLRFGCLSVRRFYWCMHDLFKNVQLRACVRGVQ 301 Query: 276 -SGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNK-DSHLLQAWKQGYTGF 333 SG +LIWRE++ + P + I W K D+ LQ W+ G TGF Sbjct: 302 MSGGAHITGQLIWREYFYTMSVNNPQYDRMEG-NEICLSIPWAKPDAEQLQRWRLGQTGF 360 Query: 334 PIIDAAMRQLNTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGW 392 P+ID+AMRQL GW+H+ LR A+FL + L +W G ++F+ LLD D + G W Sbjct: 361 PLIDSAMRQLLAEGWLHHTLRNTVATFLTRGGLWQNWEFGLQHFLKYLLDADWSVCAGNW 420 Query: 393 QWAASTGNDSVPYFR-IFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND 451 W +S+ + + + P KR DP G +I+ ++PEL +VP +YIH P + Sbjct: 421 MWVSSSAFERLLDSSLVTCPVALAKRLDPNGQYIKQYVPELQHVPKEYIHEPWLMSAEEQ 480 Query: 452 ------LSLNYPLPIVDHKKACHHTLNQYYAAKKQ 480 + ++YP I+D A + A + Sbjct: 481 KRYECLIGVHYPDRIIDLSLASKRNMLAMKALRNS 515 >gi|149202359|ref|ZP_01879332.1| Deoxyribodipyrimidine photolyase [Roseovarius sp. TM1035] gi|149144457|gb|EDM32488.1| Deoxyribodipyrimidine photolyase [Roseovarius sp. TM1035] Length = 496 Score = 302 bits (773), Expect = 9e-80, Method: Composition-based stats. Identities = 107/477 (22%), Positives = 182/477 (38%), Gaps = 25/477 (5%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 ++W + DLR+ D+ AL A ++ ++I P W + S RQ FI L + Sbjct: 4 PVILWFKRDLRVQDHPALTHAARLG--PILPLYIVEPGLWAEPDASGRQYAFICECLESL 61 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYE-INEVRRDKLLEKRL 127 ++ L+ G+ D++ L+ V L + + + RD+ + + Sbjct: 62 REDLAGLGLTLVVR----VGDAVTVLEDLRAAHAVVHLVSHEETGNLWSFGRDRRVAEWA 117 Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187 + + + P S + L + R +++ V ++ + A+ Sbjct: 118 RGQGVRWE------EMPQSGVVRRLGSRDAWQGARDRVMRAPVLGPVQGVRGLAVASDDL 171 Query: 188 VTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIP--AIQGTSQL 245 P+ + P + G + L+ F + Y P + S++ Sbjct: 172 PAPATLGLKDACPLR-----QKGGRGAGMRALQSFLSTRGESYQRAMSSPLHGARACSRI 226 Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305 SP+L+ G LS R+ S+ L WR+ + + P + + Sbjct: 227 SPHLAFGTLSLREAVQTGAMAPGGRGADWARSMRSFQARLAWRDHFMQKLEDEPEIER-R 285 Query: 306 PFIPWTEKIEWNK-DSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364 P E + + D+ L AW G TG P +DA MR L GW++ R+R + + Sbjct: 286 CLHPAYEGLRPREADALRLAAWSTGETGLPFVDACMRSLLATGWLNFRMRSMLMAVASYH 345 Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424 L +DWR D + + Q +G + RI+NP QG DP G F Sbjct: 346 LWLDWRSTGPVLAQAFTDYEPGIHWPQVQMQ--SGTTGMNTIRIYNPVKQGLDQDPTGEF 403 Query: 425 IRHWLPELNNVPTQYIHAPHSWLDKND-LSLNYPLPIVDHKKACHHTLNQYYAAKKQ 480 R WLPEL VP Y+ P W + L YP PIVD +A +A ++ Sbjct: 404 TRRWLPELAQVPDAYLQRPWDWPEAERLLERGYPAPIVDPVEAARVAREAVWACRRA 460 >gi|225011849|ref|ZP_03702287.1| Deoxyribodipyrimidine photo-lyase [Flavobacteria bacterium MS024-2A] gi|225004352|gb|EEG42324.1| Deoxyribodipyrimidine photo-lyase [Flavobacteria bacterium MS024-2A] Length = 490 Score = 301 bits (771), Expect = 1e-79, Method: Composition-based stats. Identities = 115/490 (23%), Positives = 193/490 (39%), Gaps = 27/490 (5%) Query: 3 ATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIY 62 + + +VWL+ DLR++D++AL+ A + + +++ SAR FI Sbjct: 2 SINKKELAVVWLKRDLRLSDHEALHNALAT-KKRCLLMYVFEDILLSDFHYSARHFDFIK 60 Query: 63 ASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEV-RRDK 121 S++++ L + S IE LD+ Q + L+ +++ I RDK Sbjct: 61 QSIVEMNNQLKLFNTRVLCLKGS----VIEALDTLSEQYSI-ALYSHQETGIGLTFERDK 115 Query: 122 LLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPA 181 +++ + + L + K + + + L + Sbjct: 116 SVKQWADKNGV---HWNEFL--QQGVFRGLPNRKKWIHLWTAHMNRPLFNFSPEDDQFIS 170 Query: 182 IRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIP--AI 239 L + P GEQ A L F + + Y + P A Sbjct: 171 AELICEFEKE--FEVMELNTPKSQWFQPGGEQKASRYLNSFFERRYLNYQKHISKPDLAR 228 Query: 240 QGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYP 299 + S+LSPY++ G +S RQ R +EE S+ + L W+ + Sbjct: 229 KSCSRLSPYIAWGNISMRQVLQRTQEE--KERGNKSRALVSFGSRLRWQAHFIQKFEMEC 286 Query: 300 SVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITAS 359 S K + K L+AW+ G+TG P++DAAMR L T G+++ R+R + S Sbjct: 287 S-MEYKSINKGYHALVKEKRVDYLKAWETGHTGIPMVDAAMRCLVTTGYLNFRMRALVVS 345 Query: 360 FLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFD 419 F++ L W+ + Q LD + + Q G + RI+NP G D Sbjct: 346 FVIHQLWQPWQSISGFLARQFLDFEPGIHFPQIQMQ--AGETGINTLRIYNPVKNGLEHD 403 Query: 420 PQGTFIRHWLPELNNVPTQYIHAPH------SWLDKNDLSLNYPLPIVDHKKACHHTLNQ 473 PQG F+ W+PEL +P +++H P S L L +YP PIVD Sbjct: 404 PQGKFVSKWIPELQKLPERFLHTPWEITPLESSLYDFKLGEDYPHPIVDIDTTRDKASQI 463 Query: 474 YYAAKKQSLL 483 + +K SL+ Sbjct: 464 LWNLQKNSLV 473 >gi|124107288|dbj|BAF45421.1| cryptochrome precursor [Dianemobius nigrofasciatus] Length = 539 Score = 301 bits (771), Expect = 2e-79, Method: Composition-based stats. Identities = 113/514 (21%), Positives = 191/514 (37%), Gaps = 41/514 (7%) Query: 2 KATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFI 61 ++ V + R+ LR+ DN AL A + DA + +FI E + + F+ Sbjct: 4 RSNVHKKVAVHRFRHGLRLHDNPALLDAVKDCDAF-LPIFIFDGESAGTKLVGYNRMKFL 62 Query: 62 YASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDK 121 SL + L + G + + + KL + + E RD Sbjct: 63 LESLQDIDSQLKKYGGNLYLFHGTP----LCVFQYISQTIGLHKLCFEQDCEPIWQHRDD 118 Query: 122 LLEKRLQHRVI-CKSFDDSVLLPPGSIL-NHALQMYKVYTPFRKALIQNLVQA------- 172 L++K + I C L P ++ + + F + Sbjct: 119 LVKKFCKENGIKCIERVSHTLWNPHDVIKTNGGIPPLTFEMFVHTVSVIGPPPRPVEDVE 178 Query: 173 ---------DLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFC 223 + S+P TP + + + GE AL L++ Sbjct: 179 WSVVNFGVLPMSSIPSDIKVFKNFPTPEDFGISSEVGNMNRIIQWIGGESQALRHLQERL 238 Query: 224 KEKVYYYVEQRDIPAIQGTSQL------SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSG 277 K + + E +P L S L G LS R+ + +++ + + S Sbjct: 239 KVEENAFREGYCLPNQARPDLLGPPTSQSAALRFGCLSVRKFYWSIQDMYSSIC--GPSP 296 Query: 278 AFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSH-LLQAWKQGYTGFPII 336 + ++LIWRE++ + P I W D WK+G TG+P I Sbjct: 297 NQNITSQLIWREYFYTMSVGNEYYAEM-DRNPICLNIPWKNDYGSDFNKWKEGKTGYPFI 355 Query: 337 DAAMRQLNTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWA 395 DA MRQL GW+H+ R A FL + DL + W G +F+ LLD D + G W W Sbjct: 356 DAIMRQLIQEGWIHHVARNAVACFLTRGDLWISWEEGLNFFLQYLLDADWSVCAGNWMWV 415 Query: 396 ASTGNDS-VPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWL------D 448 +S+ + + P G+R DP G +I+ ++PEL N P +Y++ P Sbjct: 416 SSSAFEQLLDCSHCMCPVNYGRRLDPWGQYIKRYIPELKNYPVEYLYEPWKAPLHVQETA 475 Query: 449 KNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQSL 482 + +YP I+DH+ A + + + + Sbjct: 476 GCIVGKDYPERIIDHQIASEKNRSYMDEIRNRLM 509 >gi|3986298|dbj|BAA35000.1| blue light photoreceptor [Drosophila melanogaster] Length = 542 Score = 301 bits (770), Expect = 2e-79, Method: Composition-based stats. Identities = 115/515 (22%), Positives = 201/515 (39%), Gaps = 50/515 (9%) Query: 10 HLVWLRNDLRITDNKALYAACHNSDA--KVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67 +++W R+ LR+ DN AL AA + D +I VFI E + + F+ SL Sbjct: 7 NVIWFRHGLRLHDNPALLAALADKDQGIALIPVFIFDGESAGTKNVGYNRMRFLLDSLQD 66 Query: 68 VQKSLSQ----KGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLL 123 + L +G + + + Q R+ ++ + E RD+ + Sbjct: 67 IDDQLQAATDGRGRLLVFE-----GEPAYIFRRLHEQVRLHRICIEQDCEPIWNERDESI 121 Query: 124 EKRLQH-RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAI 182 + + L P ++ + + +Q + + Sbjct: 122 RSLCRELNIDFVEKVSHTLWDPQLVIETNGGIPPLTYQMFLHTVQIIGLPPRPTADARLE 181 Query: 183 RLTGPVTPSNIPRFFDYPFQAIDPM----------------FPIGEQNALHILRKFCKEK 226 T R Q P + GE ALH+L + K + Sbjct: 182 DATFVELDPEFCRSLKLFEQLPTPEHFNVYGDNMGFLAKINWRGGETQALHLLDERLKVE 241 Query: 227 VYYYVEQRDIPAI------QGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPK----- 275 + + +P +S +L G LS R+ + + + F ++ ++ Sbjct: 242 QHAFERGFYLPNQALPNIHDSPKSMSAHLRFGCLSVRRFYWSVHDLFKNVQLRACVRGVQ 301 Query: 276 -SGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNK-DSHLLQAWKQGYTGF 333 +G +LIWRE++ + P+ + I W K + LLQ+W+ G TGF Sbjct: 302 MTGGAHITGQLIWREYFYTMSVNNPNYDRMEG-NEICLSIPWAKPNEDLLQSWRLGQTGF 360 Query: 334 PIIDAAMRQLNTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGW 392 P+ID AMRQL GW+H+ LR A+FL + L W G ++F+ LLD D + G W Sbjct: 361 PLIDGAMRQLLAEGWLHHTLRNTVATFLTRGGLWQSWEHGLQHFLKYLLDADWSVCAGNW 420 Query: 393 QWAASTGNDSVPYFR-IFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND 451 W +S+ + + + P KR DP GT+I+ ++PEL NVP +++H P + Sbjct: 421 MWVSSSAFERLLDSSLVTCPVALAKRLDPDGTYIKQYVPELMNVPKEFVHEPWRMSAEQQ 480 Query: 452 ------LSLNYPLPIVDHKKACHHTLNQYYAAKKQ 480 + ++YP I+D A + + + Sbjct: 481 EQYECLIGVHYPERIIDLSMAVKRNMLAMKSLRNS 515 >gi|156977867|ref|YP_001448773.1| deoxyribodipyrimidine photolyase [Vibrio harveyi ATCC BAA-1116] gi|156529461|gb|ABU74546.1| hypothetical protein VIBHAR_06659 [Vibrio harveyi ATCC BAA-1116] Length = 493 Score = 301 bits (770), Expect = 2e-79, Method: Composition-based stats. Identities = 115/490 (23%), Positives = 202/490 (41%), Gaps = 40/490 (8%) Query: 8 SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67 +++LVWL+ DLR+TD+ L A + + V+ ++I P S R F++ S+ Sbjct: 3 TINLVWLKRDLRLTDHLPLQHAVSSKNPTVL-LYIFEPMLLDDPHYSERHWRFVWQSIQD 61 Query: 68 VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEIN-EVRRDKLLEKR 126 + L+Q F ++ + L + Q + +F +++ +N RDK + Sbjct: 62 MNAQLAQHNQKVSVM----FGNARDCLSAIQNQFSIDAVFSHQEIGLNCTFERDKQVSAW 117 Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRS-----LPVPA 181 LQ + I G+++ A + + + + + +L S L V A Sbjct: 118 LQAQDIPWHE-----FEHGAVVRGAKDRFGWDKHWDTVMRSPIEEVELESASLITLDVEA 172 Query: 182 IRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIP--AI 239 + T PS + + + + G A L F + + Y P + Sbjct: 173 LGFTFTPPPSWL--------EKVKGVQTGGSSIAWQTLEDFFQRRGRDYYRSISSPTASR 224 Query: 240 QGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYP 299 ++LSPYL+ G +S R+ + L + + + A S + L W + Sbjct: 225 TACTRLSPYLAWGNISLREVYQYLLQHWQVTGFRRSLIALS--SRLHWHCHFMQKFESEC 282 Query: 300 SV---CMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMI 356 + C+ + + P + N D L AWK G TG P++DA MR L+ G+++ R+R + Sbjct: 283 EMEFRCVNQAYDPLLRQAS-NNDPIRLDAWKAGTTGIPLVDACMRCLHHTGYINFRMRAM 341 Query: 357 TASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGK 416 SFL + +DWR G + LD + + +Q G RI+NPT Q + Sbjct: 342 LVSFLTHHMNMDWRDGVTHLAQLFLDFEPGIHYPQFQMQ--AGVTGTNTIRIYNPTKQAQ 399 Query: 417 RFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKN----DLSLN--YPLPIVDHKKACHHT 470 D G FI W+PEL VPT + P L + Y P +D + + Sbjct: 400 EHDTDGEFIHKWIPELAKVPTPLLFEPWKMTAMEVVMYQLEPDSKYLAPTIDVEASAKAA 459 Query: 471 LNQYYAAKKQ 480 + +A +K+ Sbjct: 460 RERLWAWRKR 469 >gi|292656958|ref|YP_003536855.1| deoxyribodipyrimidine photolyase [Haloferax volcanii DS2] gi|291372215|gb|ADE04442.1| deoxyribodipyrimidine photolyase [Haloferax volcanii DS2] Length = 503 Score = 301 bits (770), Expect = 2e-79, Method: Composition-based stats. Identities = 126/509 (24%), Positives = 200/509 (39%), Gaps = 62/509 (12%) Query: 6 AMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGIS----------- 54 + L W R D R+ + A +V+ V+ P ++ Sbjct: 2 SEPTSLAWFRRDHRL--HDNAAFAAACDADRVVPVYCVDPREYGDRPFGGPDSFDFEKTG 59 Query: 55 ARQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEI 114 A ++ F SL ++ SL +G + L + + + Sbjct: 60 AHRARFRLESLADLRASLRDRGSDLVVREGRPE----SVLPEVAAAVDADFVTVHTRPTP 115 Query: 115 NEVRRDKLLEKRLQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKAL-------- 165 E R + +E L+ + + F L + + YT FRKA+ Sbjct: 116 EESRVESAVETELRDGGVELRRFWGHTLTHLDGLPMALSDLPDTYTTFRKAVELAAEDAG 175 Query: 166 ------------------IQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPM 207 L + + LP A S++ D Sbjct: 176 TGDAAAGDEHASDGDPGGRDPLPEPTVPPLPDDAPDAGDLPAVSDLVGTADANADRAPDD 235 Query: 208 -----FPIGEQNALHILRKFCK--EKVYYYVEQRD-IPAIQGTSQLSPYLSIGVLSPRQC 259 F GE AL + + + + Y E R+ + +S+ SP+L+ G LSPR Sbjct: 236 RGVLPFDGGETAALDRVESYIWAGDHLREYKEARNGLLGADYSSKFSPWLNEGCLSPRYV 295 Query: 260 WNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKD 319 + + + D ++ + + EL WR+F++ A + S C + I I+W +D Sbjct: 296 KAEV-DRYEDRRVE-NDSTYWLVFELRWRDFFQFQFAKHGSDCFHREGIRERTDIDWRRD 353 Query: 320 SHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQ 379 + W G TG P +DA MR+LN G+M NR R ASFL DL +DWR G YF ++ Sbjct: 354 DAQFERWAAGKTGIPFVDANMRELNATGYMSNRGRQNAASFLANDLRLDWRRGAAYFETR 413 Query: 380 LLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQY 439 L+D D ASN G W + A GNDS R F+ Q R+D +++ WLPEL+ +P +Y Sbjct: 414 LVDYDPASNYGNWAYIAGVGNDSRE--RSFDVRWQANRYDEDAEYVKTWLPELDALPAEY 471 Query: 440 IHAPHSWLDKN------DLSLNYPLPIVD 462 H P +L ++YP P+VD Sbjct: 472 AHEPWKLSGAEQASYGVELGVDYPEPMVD 500 >gi|163801389|ref|ZP_02195288.1| deoxyribodipyrimidine photolyase, putative [Vibrio sp. AND4] gi|159174878|gb|EDP59678.1| deoxyribodipyrimidine photolyase, putative [Vibrio sp. AND4] Length = 493 Score = 301 bits (770), Expect = 2e-79, Method: Composition-based stats. Identities = 112/488 (22%), Positives = 201/488 (41%), Gaps = 36/488 (7%) Query: 8 SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67 +++L+WL+ DLR+TD+ AL A +S + +++ P S R F++ SL Sbjct: 3 TINLLWLKRDLRLTDHLALQHAL-SSGHPTLLLYVFEPMLLEDPHYSERHWRFVWQSLQD 61 Query: 68 VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEIN-EVRRDKLLEKR 126 + L+ G + ++ L + Q ++ +F +++ +N +RDK + Sbjct: 62 MNAQLADYGQHILVLSG----NVVDCLSAIQTQFDISAVFSHQEIGLNCTFKRDKQVANW 117 Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAI---R 183 LQ + I G+++ A + + + +L++ + ++ Sbjct: 118 LQAQGIPWHE-----FEYGAVVRGAKDRLGWDKHWNAVMRAAIRNPELKNASLISLSNDT 172 Query: 184 LTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGT- 242 L TP Q G A L F + + Y + P+ T Sbjct: 173 LNCSFTPPPSWTVRTKGMQT------GGSSVAWQTLDDFFQRRGRDYYRRISSPSASRTA 226 Query: 243 -SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSV 301 ++LSPYL+ G +S R+ + L E + + A S + L W + + Sbjct: 227 CTRLSPYLAWGNISLREVYQYLLEHWQLAGFRRSLIALS--SRLHWHCHFIQKFESECKM 284 Query: 302 ---CMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITA 358 C+ + + + ++D L+AWK G TG P+IDA MR L+ G+++ R+R + Sbjct: 285 EFRCVNQAYEALLRQ-ACSQDQTALEAWKVGSTGIPLIDACMRCLHHTGYINFRMRAMLV 343 Query: 359 SFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRF 418 SFL + +DWR G + LD + + +Q G RI+NPT Q + Sbjct: 344 SFLTHHMNMDWRDGVAHLAQLFLDFEPGIHYPQFQMQ--AGVTGTNTIRIYNPTKQAQEH 401 Query: 419 DPQGTFIRHWLPELNNVPTQYIHAPHSWLDKN----DLSLN--YPLPIVDHKKACHHTLN 472 D G FI W+PEL VPT + P + + Y PI+D + Sbjct: 402 DADGKFIHKWIPELAMVPTPLLFEPWKMTAMETVMYQIDPDSCYLAPIIDLDNSAKAARE 461 Query: 473 QYYAAKKQ 480 + +A +K+ Sbjct: 462 RLWAWRKR 469 >gi|90577812|ref|ZP_01233623.1| deoxyribodipyrimidine photolyase, putative [Vibrio angustum S14] gi|90440898|gb|EAS66078.1| deoxyribodipyrimidine photolyase, putative [Vibrio angustum S14] Length = 491 Score = 300 bits (769), Expect = 2e-79, Method: Composition-based stats. Identities = 118/491 (24%), Positives = 209/491 (42%), Gaps = 39/491 (7%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 +++VWL+ DLR+TD++AL A N+D V+ ++I P S R FI+ SL Sbjct: 2 KKINVVWLKRDLRLTDHQALSVAA-NNDYPVMLIYIMEPMLLSDPHYSERHWRFIWQSLE 60 Query: 67 QVQKSLSQKGI-VFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEIN-EVRRDKLLE 124 + L+ VF +H +++E LD + LF +++ + RD ++ Sbjct: 61 DMNHQLACVNSQVFIFH-----GNAVECLDKLMHHCPINALFSHQEIGLGCTFERDLNIK 115 Query: 125 KRL-QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIR 183 + ++ F G+++ A + +++A + S+ + + Sbjct: 116 AWCDKQQIQWHEFQQ------GAVIRGAKNRTNWDKHW-----NRVMRAPVFSVNLDKVN 164 Query: 184 LTGPVTPSNIPRFFDYPF---QAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIP--A 238 G F P + + M G AL L F + Y P + Sbjct: 165 WVGTCPEQLAYMLFSPPESWRERVQGMQTGGSTLALQTLDDFFSRRGKEYYRSISSPTAS 224 Query: 239 IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFY 298 S+LSPYL+ G +S RQ + ++ + + ++ + L W + Sbjct: 225 RTACSRLSPYLAWGNISLRQVYQQVLAHWNVKGFR--RSLIAFSSRLHWHCHFIQKFESE 282 Query: 299 PSV---CMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRM 355 P + CM + + + +K+ L AWK+G TG P+IDA MR L G+++ R+R Sbjct: 283 PDIEFYCMNRTYDRLLAE-SCSKNKMKLNAWKKGNTGIPLIDACMRCLYHTGYINFRMRS 341 Query: 356 ITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQG 415 + SFL L +DWR G + LD + + +Q G + RI+NPT Q Sbjct: 342 MLVSFLTHHLNIDWRDGVTHLAQLFLDFEPGIHYSQFQMQ--AGVTGINTIRIYNPTKQA 399 Query: 416 KRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDL--SLN----YPLPIVDHKKACHH 469 + DP G FI W+PEL N+P + P + + + L+ Y PI+D +++ + Sbjct: 400 QEHDPDGEFIHKWVPELANIPVPLLFEPWTLTELEVVMYQLDNNSCYLYPIIDLERSAKN 459 Query: 470 TLNQYYAAKKQ 480 + + K + Sbjct: 460 ARERLWGWKAR 470 >gi|325180456|emb|CCA14862.1| cryptochrome putative [Albugo laibachii Nc14] Length = 639 Score = 300 bits (769), Expect = 3e-79, Method: Composition-based stats. Identities = 126/555 (22%), Positives = 225/555 (40%), Gaps = 94/555 (16%) Query: 10 HLVWLRNDLRITDNKALYAACHNSDAK-------VIAVFIATPEQWRQHGISARQSHFIY 62 ++W R DLR+ DN AL+ A +++ +I ++I + ++ + F+ Sbjct: 60 AIMWFRRDLRLHDNHALHRALKFVESQNDTETVQLIPLYII--HRPKRLLCGVNRFQFLL 117 Query: 63 ASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKL 122 S+ + ++++ +G + D L ++ ++T +F+++ E + RD Sbjct: 118 ESVGTLAEAIAARGSRLIIARGEGIDVFRRILPAW----KITHIFFDQAIEPFAIARDHQ 173 Query: 123 LEKRLQH-RVICKSFDDSVLLPPGSILNHALQ---------------------------M 154 + + V ++ L ++ Sbjct: 174 VRELAASLNVHVETTHGYTLYDQDKVIEKNGGKAPATYTAFLRTVATFPEPPKPLPVPLR 233 Query: 155 YKVYTPFRKALIQNLVQADLRSLPVPAIR-----------------LTGPVTPSNIPRFF 197 + R+ L + LV+ + + GP +P Sbjct: 234 VSGWDDCREGLYECLVEFAQKGQDCLDEENQTTKTLSSFSQSWIDVIAGPEKLFRVPELS 293 Query: 198 DYPFQAI--DPMFPIGEQNALHILRKFCKEKVY--YYVEQRDIPAI----QGTSQLSPYL 249 ++ F+ GE AL IL+ +CK + + + + PA + T+ LSPYL Sbjct: 294 EFGFEKPGRHSFIYGGENIALKILQTYCKNEGQVVKFEKPKTSPAETCPSKSTTSLSPYL 353 Query: 250 SIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIP 309 G +S R ++R+++ + S +L+WREF+ P + P Sbjct: 354 YFGCMSTRTFYHRVRDIQNRHAKASSAPPVSLDGQLLWREFFHCNGHANPQFDKMEG-NP 412 Query: 310 WTEKIEWN---------------KDSHL----LQAWKQGYTGFPIIDAAMRQLNTIGWMH 350 I+W +D L +AWK+G TG+P IDA M QL GWMH Sbjct: 413 LCLYIDWRWHTLPSTKEEEDALPEDEKLAKAQFEAWKEGQTGYPWIDAIMIQLKEEGWMH 472 Query: 351 NRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIF 409 + R A FL + DL + W G E F +L+D D + N G W W +++ + YFR++ Sbjct: 473 HLARHSVACFLTRGDLYISWVRGLEVFQERLIDHDWSINCGNWLWLSASAFFTA-YFRVY 531 Query: 410 NPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSW------LDKNDLSLNYPLPIVDH 463 +P+ GK++D +G FIR ++P L +P++YI+ P L + +YP PIVDH Sbjct: 532 SPSTFGKKWDAEGKFIRKYIPALAKMPSKYIYEPWKAPVTVQRLANCLVGKDYPFPIVDH 591 Query: 464 KKACHHTLNQYYAAK 478 K A + A+ Sbjct: 592 KIAMRRCMAGMKASY 606 >gi|154343744|ref|XP_001567816.1| DNA repair enzyme [Leishmania braziliensis MHOM/BR/75/M2904] Length = 541 Score = 300 bits (769), Expect = 3e-79, Method: Composition-based stats. Identities = 145/528 (27%), Positives = 215/528 (40%), Gaps = 68/528 (12%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAK---VIAVFIATPEQW---RQHGISARQSHFIY 62 V L R DLR+ DN L A C + + V+ F P Q R F Sbjct: 27 VALFLFRRDLRVVDNTGLQALCDEAAHRSISVLTAFFFNPIQCDKERNPYFGDAFFQFFC 86 Query: 63 ASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKL 122 SL+ + + +Q + S+ + DS V L +N Y + RD+L Sbjct: 87 ESLVDLDGA-AQLSNGLVCLRGSDEECLRRIHDS---GYEVKVLGFNEDYTPFALSRDRL 142 Query: 123 LEKRL-QHRVICKS-FDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVP 180 L +H ++C + D L P + Q Y V+TPF K + L Sbjct: 143 LRDYAEKHGIVCVTGPHDYSLRPLDDVAKGPDQPYSVFTPFYKKFMAEHAHRVAEPLWGN 202 Query: 181 AIRLTGPVTPSNIPRFFDYPFQAID--PMFP-----IGEQNALHILRKFCKEKVYYYVEQ 233 ++ + + P G L L C E + Y + Sbjct: 203 VKKVQSMLVSQPKKHLEHHLVNPARLYTHMPQVQDHGGRAEGLKRLA--CVETLRRYADV 260 Query: 234 RDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRH 293 RD A TS LSP++ G +S R+ W+ + + +L+WREFY Sbjct: 261 RDDIAGDKTSHLSPHMKCGTVSTREVWHASVQAL--------GTGHPFTRQLVWREFYAM 312 Query: 294 LMAFYPSVCMGK--------------------PFIPWTEKIEWNKDSHLLQAWKQGYTGF 333 L P + G+ PF P + WN + +A+K+G TG Sbjct: 313 LAFTRPRLLQGQLNSFLGKKNIMKATQPKQNAPFQPSYDNYTWNWKAEHFEAFKEGRTGV 372 Query: 334 PIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQ 393 P++DAA+R L GW HNR R++ ++F VK L +DWR E +F + +D D+A+NNGGW Sbjct: 373 PLVDAAVRCLTATGWCHNRCRLVISNFAVKVLGIDWRECERWFATVAVDYDVANNNGGWL 432 Query: 394 WAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND-- 451 W++ G D+ PYFR FN Q +RFDP FI W+PEL VP +H + K+ Sbjct: 433 WSSGQGADAQPYFRTFNAFRQSERFDPDCKFIFQWVPELAEVPPSVVHKWEEYCAKDRDK 492 Query: 452 -----------------LSLNYPLPIVDHKKACHHTLNQYYAAKKQSL 482 + +YP+PIVD K A + +Y K + Sbjct: 493 ATTNYSKKRDDMGKRGAYTTSYPVPIVDTKAATKAIIEEYKKYGKSKM 540 >gi|88860348|ref|ZP_01134986.1| putative deoxyribodipyrimidine photolyase [Pseudoalteromonas tunicata D2] gi|88817546|gb|EAR27363.1| putative deoxyribodipyrimidine photolyase [Pseudoalteromonas tunicata D2] Length = 500 Score = 300 bits (769), Expect = 3e-79, Method: Composition-based stats. Identities = 104/485 (21%), Positives = 195/485 (40%), Gaps = 31/485 (6%) Query: 8 SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67 +++VW + DLR++D+ L A +S V+ ++ P +AR F++ SL Sbjct: 4 PINIVWFKRDLRLSDHAPLQHAFASS-IPVLLIYNFEPLLLDDPHYTARHWRFVWQSLAD 62 Query: 68 VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEV-RRDKLLEKR 126 + + L+ F+ + I L Q + LF +++ +N RDK + Sbjct: 63 LNQQLA----RFKTQIYIFSEPMIALLQRLGEQFEIRGLFSHQEIGLNNTFMRDKAVSAW 118 Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 I + G+++ ++ +++ + + + L + Sbjct: 119 CHSNKIVWHETQT-----GAVVRGKKHRRDWQQLWQNSILSQVSTPNWQQLNTVYLTDYQ 173 Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ--GTSQ 244 + + D FQ G + A ++ F E+ Y + P++ S+ Sbjct: 174 ELKLDERYQMVDENFQL------GGPKQARALIASFFVERGVGYQKGISSPSLSRLHCSR 227 Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304 LSPYL+ G +S RQ +++ + + ++++ L W + + Sbjct: 228 LSPYLAWGNVSLRQVYHQAIGHYEIAKRGWRKPLAAFISRLHWHCHFMQKFESESRIEF- 286 Query: 305 KPFIPWTEKIEWNKDS---HLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFL 361 +P + D H L W+ G TG PIIDA MR L G+++ R+R + SF+ Sbjct: 287 EPLNMAYLHYPYRTDEQVEHDLALWQHGNTGIPIIDACMRCLKHTGYINFRMRAMLVSFV 346 Query: 362 VKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQ 421 L + W+ LD + + Q AS + R++NP Q + DP Sbjct: 347 THHLNISWQQASMPLAQYFLDFEPGIHYPQIQMQASVT--GMNTIRLYNPIKQSQDQDPD 404 Query: 422 GTFIRHWLPELNNVPTQYIHAPH------SWLDKNDLSLNYPLPIVDHKKACHHTLNQYY 475 G FIR W PEL N+P++YIH P + + DL +Y ++D A + + Sbjct: 405 GVFIRTWCPELKNLPSEYIHQPWLQPPMEAIFNDFDLERDYHPSMIDLDIAAQIARERLW 464 Query: 476 AAKKQ 480 +++ Sbjct: 465 GFRER 469 >gi|301617223|ref|XP_002938047.1| PREDICTED: LOW QUALITY PROTEIN: cryptochrome DASH-like [Xenopus (Silurana) tropicalis] Length = 523 Score = 300 bits (768), Expect = 3e-79, Method: Composition-based stats. Identities = 130/485 (26%), Positives = 214/485 (44%), Gaps = 35/485 (7%) Query: 1 MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGI------S 54 M A V + LRNDLR+ DN+ L+ A N+D +++ ++ P + Sbjct: 1 MAARAR--VIICLLRNDLRLHDNEVLHWAHRNAD-QIVPLYCFDPRHYGGTHYFNFPKTG 57 Query: 55 ARQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEI 114 + F+ S+ ++ +L ++G + + + V+ + + + + Sbjct: 58 PHRLKFLLESVQDLRNTLKERGSNLLLRRGKPEEIIAGLVKQLG---NVSAVTLHEEVTV 114 Query: 115 NEVRRDK-LLEKRLQHRVICKSFDDSVLLPPGSIL-NHALQMYKVYTPFRKAL-----IQ 167 + +L + ++F S L + H + VYT FRKA ++ Sbjct: 115 VPLYSYNPILWPPDWSGLRYQTFWGSTLYHREDLPFRHISSLPDVYTQFRKAAETQGKVR 174 Query: 168 NLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFP--IGEQNALHILRKFCKE 225 + Q R P+P+ G V D P FP GE AL L + E Sbjct: 175 STFQMPDRLKPLPSGLEEGSVPTHQDFDQQD-PLTDPRSAFPCCGGETQALQRLHHYFWE 233 Query: 226 KV--YYYVEQRD-IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWL 282 Y + R+ + I +++ +P+L++G +SPR + ++++ + + + Sbjct: 234 TNLVASYKDTRNGLIGIDYSTKFAPWLALGCISPRYIYEQIRKYEKERT--ANQSTYWVI 291 Query: 283 NELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQ 342 EL+WR+++R + Y + + + W KD L AWK+G TG P +DA MR+ Sbjct: 292 FELLWRDYFRFVALKYGRRIFFLRGLQDKD-VPWKKDPKLFDAWKEGRTGVPFVDANMRE 350 Query: 343 LNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDS 402 L G+M NR R ASFL KDL +DWR+G E+F L+D D+ SN G W ++A GND Sbjct: 351 LAMTGFMSNRGRQNVASFLTKDLXIDWRLGAEWFEYLLVDYDVCSNYGNWLYSAGIGNDP 410 Query: 403 VPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKN------DLSLNY 456 R FN QG +D G +IR W+PEL + H P + + L Y Sbjct: 411 RE-NRKFNMIKQGLDYDAGGDYIRLWVPELQQIKGGDAHTPWALSTASLAHSNVSLGETY 469 Query: 457 PLPIV 461 P PIV Sbjct: 470 PYPIV 474 >gi|238828068|pdb|2VTB|B Chain B, Structure Of Cryptochrome 3 - Dna Complex Length = 525 Score = 300 bits (768), Expect = 3e-79, Method: Composition-based stats. Identities = 115/460 (25%), Positives = 205/460 (44%), Gaps = 26/460 (5%) Query: 4 TTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGI------SARQ 57 V ++W RNDLR+ DN ALY A +SD ++ V+ P + A + Sbjct: 37 RKGKGVTILWFRNDLRVLDNDALYKAWSSSDT-ILPVYCLDPRLFHTTHFFNFPKTGALR 95 Query: 58 SHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEV 117 F+ L+ ++K+L ++G+ E L S +F +++ EV Sbjct: 96 GGFLMECLVDLRKNLMKRGLNLLIRSGKPE----EILPSLAKDFGARTVFAHKETCSEEV 151 Query: 118 RRDKLLEKRLQHRV---ICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADL 174 ++L+ + L+ + S + + + VYT FRK++ Sbjct: 152 DVERLVNQGLKRVGNSTKLELIWGSTMYHKDDLPFDVFDLPDVYTQFRKSVEAKCSIRSS 211 Query: 175 RSLPVPAIRLTGPVTPSNIPRFFDYPFQAID----PMFPIGEQNALHI-LRKFCK-EKVY 228 +P+ ++P + + F GE + F K + + Sbjct: 212 TRIPLSLGPTPSVDDWGDVPTLEKLGVEPQEVTRGMRFVGGESAGVGRVFEYFWKKDLLK 271 Query: 229 YYVEQRD-IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIW 287 Y E R+ + +++ SP+L+ G +SPR + ++ + + + + L ELIW Sbjct: 272 VYKETRNGMLGPDYSTKFSPWLAFGCISPRFIYEEVQRYEKERV--ANNSTYWVLFELIW 329 Query: 288 REFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIG 347 R+++R L + P +W++D L ++W+ TG+P+IDA M++L+T G Sbjct: 330 RDYFRFLSIKCGNSLFHLGG-PRNVNGKWSQDQKLFESWRDAKTGYPLIDANMKELSTTG 388 Query: 348 WMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFR 407 +M NR R I SFLV+D+ +DWR+G E+F + LLD D SN G W + G + R Sbjct: 389 FMSNRGRQIVCSFLVRDMGLDWRMGAEWFETCLLDYDPCSNYGNWTY--GAGVNDPREDR 446 Query: 408 IFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWL 447 F+ Q + +DP+G ++ WL +L +P + H P + Sbjct: 447 YFSIPKQAQNYDPEGEYVAFWLQQLRRLPKEKRHWPGRLM 486 >gi|154250062|ref|YP_001410887.1| deoxyribodipyrimidine photo-lyase [Fervidobacterium nodosum Rt17-B1] gi|154153998|gb|ABS61230.1| Deoxyribodipyrimidine photo-lyase [Fervidobacterium nodosum Rt17-B1] Length = 436 Score = 300 bits (768), Expect = 3e-79, Method: Composition-based stats. Identities = 141/471 (29%), Positives = 217/471 (46%), Gaps = 46/471 (9%) Query: 10 HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69 + + DLR+ DNKAL+ A NS +K+I +F+ ++ ++ F+ L + Sbjct: 3 SMYLFKRDLRLDDNKALFEALKNS-SKIIPIFVFNKTILKEFNAYNQKVGFVVDVLKNIS 61 Query: 70 KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH 129 K I + E L+ + + L+ + + RD+ +EK + Sbjct: 62 KK-----INLYVFHGEDD----EILEFLFSKYKPDALYTAQSFSWQGEERDRNIEKVCRK 112 Query: 130 -RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALI----QNLVQADLRSLPVPAIRL 184 V + D+ L I KV+TPF K + + ++ L + L Sbjct: 113 CNVKFHAVFDNYLADFRKIP-----YTKVFTPFYKKWLGYVESQEYEINIEELKRKVVAL 167 Query: 185 TGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244 + + +F + + + G + LR + Y EQRD P + +S+ Sbjct: 168 DLDTIDTILVKFPELNQKNEVFTYDYGFE----RLRSY---DFAKYQEQRDFPGLDMSSR 220 Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304 LSPY+ GVLS R+ N + + ++ +L WREF+ H+ + Sbjct: 221 LSPYIRFGVLSIRKIHNIASKVSPE-----------FVRQLAWREFWYHIKYNFSEFNK- 268 Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364 F+ + W D L + + TG+PI+DA +RQL WMHNR+R+I A+FLVKD Sbjct: 269 LEFLEKRRNVRWRYDEKLFEKFVNAQTGYPIVDAGIRQLKQENWMHNRVRLIVANFLVKD 328 Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424 LL+DWRIGE++F LLD D N G WQW+AS G D P RIFNP IQ ++FDP + Sbjct: 329 LLIDWRIGEKFFREYLLDYDEVLNVGNWQWSASVGPDPKP-LRIFNPMIQSEKFDPNCEY 387 Query: 425 IRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYY 475 I+ ++PEL N IH P + LNY PIV+H +A T Y Sbjct: 388 IKKYIPELKNEENYKIHNPL------EYKLNYYEPIVNHYEAVQITKRLYK 432 >gi|322505598|emb|CAM40576.2| putative deoxyribodipyrimidine photolyase [Leishmania braziliensis MHOM/BR/75/M2904] Length = 541 Score = 300 bits (768), Expect = 4e-79, Method: Composition-based stats. Identities = 145/528 (27%), Positives = 215/528 (40%), Gaps = 68/528 (12%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAK---VIAVFIATPEQW---RQHGISARQSHFIY 62 V L R DLR+ DN L A C + + V+ F P Q R F Sbjct: 27 VALFLFRRDLRVVDNTGLQALCDEAAHRSISVLTAFFFNPIQCDKERNPYFGDAFFQFFC 86 Query: 63 ASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKL 122 SL+ + + +Q + S+ + DS V L +N Y + RD+L Sbjct: 87 ESLVDLDGA-AQLSNGLVCLRGSDEECLRRIRDS---GYEVKVLGFNEDYTPFALSRDRL 142 Query: 123 LEKRL-QHRVICKS-FDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVP 180 L +H ++C + D L P + Q Y V+TPF K + L Sbjct: 143 LRDYAEKHGIVCVTGPHDYSLRPLDDVAKGPDQPYSVFTPFYKKFMAEHAHRVAEPLWGN 202 Query: 181 AIRLTGPVTPSNIPRFFDYPFQAID--PMFP-----IGEQNALHILRKFCKEKVYYYVEQ 233 ++ + + P G L L C E + Y + Sbjct: 203 VKKVQSMLVSQPKKHLEHHLVNPARLYTHMPQVQDHGGRAEGLKRLA--CVETLRRYADV 260 Query: 234 RDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRH 293 RD A TS LSP++ G +S R+ W+ + + +L+WREFY Sbjct: 261 RDDIAGDKTSHLSPHMKCGTVSTREVWHASVQAL--------GTGHPFTRQLVWREFYAM 312 Query: 294 LMAFYPSVCMGK--------------------PFIPWTEKIEWNKDSHLLQAWKQGYTGF 333 L P + G+ PF P + WN + +A+K+G TG Sbjct: 313 LAFTRPRLLQGQLNSFLGKKNIMKATQPKQNAPFQPSYDNYTWNWKAEHFEAFKEGRTGV 372 Query: 334 PIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQ 393 P++DAA+R L GW HNR R++ ++F VK L +DWR E +F + +D D+A+NNGGW Sbjct: 373 PLVDAAVRCLTATGWCHNRCRLVISNFAVKVLGIDWRECERWFATVAVDYDVANNNGGWL 432 Query: 394 WAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND-- 451 W++ G D+ PYFR FN Q +RFDP FI W+PEL VP +H + K+ Sbjct: 433 WSSGQGADAQPYFRTFNAFRQSERFDPDCKFIFQWVPELAEVPPSVVHKWEEYCAKDRDK 492 Query: 452 -----------------LSLNYPLPIVDHKKACHHTLNQYYAAKKQSL 482 + +YP+PIVD K A + +Y K + Sbjct: 493 ATTNYSKKRDDMGKRGAYTTSYPVPIVDTKAATKAIIEEYKKYGKSKM 540 >gi|70727202|ref|YP_254118.1| hypothetical protein SH2203 [Staphylococcus haemolyticus JCSC1435] gi|68447928|dbj|BAE05512.1| unnamed protein product [Staphylococcus haemolyticus JCSC1435] Length = 457 Score = 300 bits (768), Expect = 4e-79, Method: Composition-based stats. Identities = 136/479 (28%), Positives = 236/479 (49%), Gaps = 30/479 (6%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M++ ++ L RI +N L+ H + + ++ P++ + + ++++ + + Sbjct: 1 MTIGVI-LNRVFRINNNP-LFEYIHQNKEDIEKCYLIIPQEIFEEDDTDMKANYYFGVMQ 58 Query: 67 QVQKSLSQKGI---VFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLL 123 L Q I + Y +F D + ++ + + ++ Y+I ++ Sbjct: 59 SFLNDLRQYDIEPFLLDYSDLGDFCDD-KSINEVIVAGDIMS-YHQESYDIRHLK----- 111 Query: 124 EKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIR 183 + +H + + + P + +N + YKV+T F KA L + D S Sbjct: 112 KAFNKHNITVTTVRANHYFKPSATMNKQGEPYKVFTSFYKAHRSKLRKHD--SYAYKLKD 169 Query: 184 LTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS 243 L+ S DY F + E A+ + + + Y R+ TS Sbjct: 170 LSDLFVKSQQKLNQDY------SKFGLSESKAIKKWNDYIDQDIQNYETNREYLPEVLTS 223 Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCM 303 QLS L+ G++ +Q +L E + + + ++ EL++REFY LM YP+ Sbjct: 224 QLSIILAYGIIDIKQIVTQLLERYEE----DEHNIEQFIRELMFREFYYVLMTQYPNTA- 278 Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363 + F I+W + ++W +G+TGFPI+DAAM +LN G+MHNR+RM+ + FL K Sbjct: 279 HEAFNEKYRDIKWEYNKDEFKSWCEGHTGFPIVDAAMTELNQTGFMHNRMRMVVSQFLTK 338 Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423 DL +DW GE+YF +L+D D ASN GWQW+ASTG D+VPYFR+FNP+ Q +RFD Sbjct: 339 DLFIDWTWGEDYFRRKLIDFDSASNVHGWQWSASTGTDAVPYFRMFNPSRQSERFDKDAL 398 Query: 424 FIRHWLPELNNVPTQYIHAPHSW-----LDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477 +I+ ++P+LN+V + +H P + + L +YP P+VDHK+A H ++ + Sbjct: 399 YIKTFIPQLNDVTPKLLHEPINHEAELEQEGIKLGQDYPKPLVDHKEARDHVMSVFKQI 457 >gi|308799831|ref|XP_003074697.1| CRY DASH-like protein (ISS) [Ostreococcus tauri] gi|116000867|emb|CAL50547.1| CRY DASH-like protein (ISS) [Ostreococcus tauri] Length = 787 Score = 300 bits (767), Expect = 5e-79, Method: Composition-based stats. Identities = 130/506 (25%), Positives = 213/506 (42%), Gaps = 60/506 (11%) Query: 2 KATTAM--SVHLVWLRNDLRITDNK----ALYAACHNSDAKVIAVFIATPEQWRQHG--- 52 + T+ M + ++W RNDLR+ DN A A +SD +V+ V++ ++ Sbjct: 237 ETTSGMGRTRVVIWFRNDLRLLDNACVARAATLASESSDVEVVPVYVFDETYFKPSKRGL 296 Query: 53 --ISARQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNR 110 A + F + ++ SL G + D E + T + Sbjct: 297 ARFGAGRGKFTLECVGDLKTSLRALGSDLLVRCGKSRDVIAEL--TLTGANDRTIILTQT 354 Query: 111 QYEINEVRRDKLLEKRLQHRV-------ICKSFDDSVLLP----PGSILNHALQMYKVYT 159 + E D +E+ + R + S L P + + + V+T Sbjct: 355 EVTSEETEMDVAVERATRERARGGAASATMERHWGSTLYHIDDVPFDVTSGLSDLPDVFT 414 Query: 160 PFRKALIQNLVQADLRSLPVPAIRLTGPVTPS-----NIPRFFDYPFQAIDPM------- 207 PFR + D+ +P P G V S +P+ D PF + + Sbjct: 415 PFRNKVESKCKVRDV--IPAPTANELGHVPASVEGFEWMPKPSDLPFASSEIAMDCDKRI 472 Query: 208 -----------FPIGEQNALHILRKFCKE--KVYYYVEQRD-IPAIQGTSQLSPYLSIGV 253 F GE NAL ++ + E ++ Y E R+ + +++L+P+L++G Sbjct: 473 KDCLDERSVLDFKGGESNALARVKYYLWESDRLATYFETRNGMLGGDYSTKLAPWLALGC 532 Query: 254 LSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEK 313 +SPR + ++ + + + + ELIWR+F++ + + Sbjct: 533 VSPRHVVSEIRRYESERV--ENKSTYWVIFELIWRDFFKFFALKHGNKIFHLDGTAGRRA 590 Query: 314 IEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGE 373 W +D +L+AWK G TG+P+IDA MR+L G+M NR R AS+L D +DWR G Sbjct: 591 -SWKRDEKILKAWKTGTTGYPLIDANMRELAATGFMSNRGRQNVASWLALDAGIDWRHGA 649 Query: 374 EYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELN 433 ++F LLD D ASN G W AA + FN Q K +DP G +I+ W+ EL Sbjct: 650 DWFEHHLLDYDTASNWGNWCAAAGMTGGRINR---FNIAKQTKDYDPAGEYIKTWVKELA 706 Query: 434 NVPTQYIHAPHSWLD--KNDLSLNYP 457 VP YI P+ ++ + LNYP Sbjct: 707 EVPAAYIADPNQAPRELRDRIGLNYP 732 >gi|88802912|ref|ZP_01118439.1| putative deoxyribodipyrimidine photolyase [Polaribacter irgensii 23-P] gi|88781770|gb|EAR12948.1| putative deoxyribodipyrimidine photolyase [Polaribacter irgensii 23-P] Length = 486 Score = 300 bits (767), Expect = 5e-79, Method: Composition-based stats. Identities = 112/487 (22%), Positives = 202/487 (41%), Gaps = 32/487 (6%) Query: 8 SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67 +++VWL+ DLR+ D+ L+ A I ++ P S R F+Y SL Sbjct: 5 PINIVWLKRDLRLRDHVPLHTA-EQKGVPYIIIYFFEPSIIEYPDTSPRHLQFVYHSLKS 63 Query: 68 VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEIN-EVRRDKLLEKR 126 + K L+ + + ++++ + + +LF ++ + +RDK + Sbjct: 64 LDKGLANYNRKVEV----FYGEAMDIFNFLNTHYSIQQLFSYQESGLKKTWQRDKKIRAF 119 Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 I I+ + A+ +++ + + + Sbjct: 120 CAINNIYWEESQR-----DGIIRGLKNRDTWNKRWHAAMHTPILKNNYSVSKLNTVEHAY 174 Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIP--AIQGTSQ 244 + + + +YP P GE+NA L F +++ + Y P + S+ Sbjct: 175 VLPQELVAKLENYP----KHYQPAGEENAWRYLTSFTQKRGFNYHRHISKPTESRIACSR 230 Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304 LSPY + G +S +Q ++ +V + ++ L ++ H + + C Sbjct: 231 LSPYFAWGNISIKQVFH-----YVGKHPNGTANNRAFSGMLTRLHWHCHFIQKFEVECTY 285 Query: 305 KPFI--PWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLV 362 + E + K++ L+AWK G TG+P+IDA MR + GW++ R+R + SFL Sbjct: 286 ETLCVNKGYELLAHKKNALFLKAWKTGQTGYPLIDACMRAVEQTGWINFRMRAMVVSFLT 345 Query: 363 KDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQG 422 +L DWR G + Q LD + + +Q G + R++NP + DPQG Sbjct: 346 LNLDQDWRDGVYHLACQFLDYEPGIHYPQFQMQ--AGTTGINTVRLYNPVKNSEEHDPQG 403 Query: 423 TFIRHWLPELNNVPTQYIHAPHSWLDKND------LSLNYPLPIVDHKKACHHTLNQYYA 476 FI+ W+PEL NVP YIH P + + +YPLPIVD K + ++ + Sbjct: 404 VFIKKWVPELENVPEAYIHEPWTMSLMEQAFCGVAIGEDYPLPIVDLKTSAKLARDKIWG 463 Query: 477 AKKQSLL 483 KK + Sbjct: 464 HKKHPAV 470 >gi|134082999|emb|CAK42762.1| unnamed protein product [Aspergillus niger] Length = 567 Score = 299 bits (766), Expect = 6e-79, Method: Composition-based stats. Identities = 122/510 (23%), Positives = 197/510 (38%), Gaps = 37/510 (7%) Query: 1 MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHF 60 M +A +V + W R DLR+ DN AL AA + + I +F P Q + + F Sbjct: 1 MPPQSAPTV-IFWHRTDLRLHDNPALQAALSLNPSTFIPIFTWDPHYAYQVRVGPNRWRF 59 Query: 61 IYASLLQVQKSLSQKG--IVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVR 118 + + +S + + + T L + + Sbjct: 60 LLECQNDLSQSYRKLNPKQKLWVVR----EAPQTVFPKLFKAWGATHLVFESDTDGYARE 115 Query: 119 RDKLLEKRLQHRVICKSFD-DSVLLPPGSILNHA-LQMYKVYTPFRKALIQNLVQADLRS 176 RD+ + K + L ++ + KA+ Q R Sbjct: 116 RDETIRKLANEAGVEVIVKSGRTLFDSDEVVKQNKGEPTMSIHQVEKAIEQINNGVPDRP 175 Query: 177 LPVP----------AIRLTGPVTPSNIPRFFDYPFQAIDPMFP--IGEQNALHILRKFCK 224 + P +R P +IP + P GE AL +L + + Sbjct: 176 VDAPERIPDPLGEEKMRDISPKGDFSIPTLDELSIDPSQATSPHHGGESIALEMLTTYLQ 235 Query: 225 EKVYY---YVEQRDIPAI---QGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSG- 277 + Y + + + PA Q T+ LSP+L G LS R+ W+ +++ K Sbjct: 236 QNEDYIATFEKPKTSPAAFHPQATTLLSPHLHFGSLSVRKFWHDVQDTLQQRESAHKPTS 295 Query: 278 --AFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPI 335 + +L++RE + A V + + WK+G TGFP Sbjct: 296 DLPTNLPGQLLFREMFFAAQAALGPVYAQTRGNKIVRF----QAEVWFRRWKEGRTGFPW 351 Query: 336 IDAAMRQLNTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQW 394 IDA MRQL GW+H+ R A FL + V W G E F L+D + ASN G W W Sbjct: 352 IDALMRQLKNEGWIHHLGRHSVACFLTRGGCYVHWERGAEVFEEWLIDHETASNVGNWMW 411 Query: 395 AASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPH-SWLDKNDLS 453 + T + Y R ++P GK++DP+G FIRH++PEL + +YI+ P + L+ Sbjct: 412 LSCTAFFTQ-YNRCYSPVAFGKKWDPEGRFIRHYIPELEHYDKKYIYEPWKAPLEDQKRW 470 Query: 454 LNYPLPIVDHKKACHHTLNQYYAAKKQSLL 483 +YP P+ D + + Q A + L+ Sbjct: 471 KSYPEPMFDFDERRQTCIAQMKEAYEVHLM 500 >gi|332671236|ref|YP_004454244.1| DNA photolyase FAD-binding protein [Cellulomonas fimi ATCC 484] gi|332340274|gb|AEE46857.1| DNA photolyase FAD-binding protein [Cellulomonas fimi ATCC 484] Length = 450 Score = 299 bits (765), Expect = 7e-79, Method: Composition-based stats. Identities = 139/462 (30%), Positives = 204/462 (44%), Gaps = 34/462 (7%) Query: 9 VHLVWLRNDLRITDNKALYAACHNS---DAKVIAVFIATPEQWRQHGISARQSHFIYASL 65 + W R DLR+ DN AL AA + D V+ +F+ P W + + ++ SL Sbjct: 2 PTVHWFRRDLRLADNPALVAAVEAARRADDAVVPLFVVDPGLWTA--AAGPRVAYLARSL 59 Query: 66 LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125 + +L + +V + + + + E RRD + + Sbjct: 60 RALDAALDGRLVVRHGRPQD-------VVPAVAREVEAPTVHVTAATEPYGRRRDDAVAQ 112 Query: 126 RLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQAD-LRSLPVPAIRL 184 L V + + PG + Y+V+TPFR+A + + A R VP + Sbjct: 113 ALGD-VPLVATGSPYAVAPGRLRTQQGSPYEVFTPFRRAWLDHGWSAPAPRPRSVPWADV 171 Query: 185 TGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244 G P D P F + + Y E RD P + GTS Sbjct: 172 RGDGVPDEPATTVDLPAAGEAAARRRWAT--------FVADALADYDEDRDRPDLDGTSS 223 Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304 +S L G L PR L + ++ +EL WREF+ ++ +P Sbjct: 224 MSVPLKYGELHPRTLLADL------AGAGSSASVATYRSELAWREFHADVLWHHPDAAR- 276 Query: 305 KPFIPWTEKIEWNKDSHLLQAWK---QGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFL 361 + + W A+ +G TG+P++DA MRQL IGWMHNR+RM+TASFL Sbjct: 277 RSLRTVVPEDAWATGPAADDAFAAWAEGRTGYPLVDAGMRQLRAIGWMHNRVRMVTASFL 336 Query: 362 VKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQ 421 VKDL W+ G E+F++ L+DGD+ N WQW A TG D+ PYFR+FNP +QG+RFDP Sbjct: 337 VKDLHQRWQRGAEHFLAWLVDGDVPQNQLNWQWVAGTGRDAAPYFRVFNPVLQGRRFDPD 396 Query: 422 GTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDH 463 GT++R W+PEL +P +H P IVDH Sbjct: 397 GTYVRQWVPELRGIPGGAVHEPWKLPAAAAPDYP--PRIVDH 436 >gi|325284597|ref|YP_004264060.1| Uracil-DNA glycosylase [Deinococcus proteolyticus MRP] gi|324316086|gb|ADY27200.1| Uracil-DNA glycosylase [Deinococcus proteolyticus MRP] Length = 757 Score = 299 bits (765), Expect = 8e-79, Method: Composition-based stats. Identities = 113/492 (22%), Positives = 190/492 (38%), Gaps = 37/492 (7%) Query: 8 SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67 V +VW + DLR++D+ AL A V+ ++I PEQ + ++ L Sbjct: 3 PVAVVWFKKDLRVSDHAALSRAAERG--PVLPLYIYEPEQLGHEEFAGHHLTYLNECLHD 60 Query: 68 VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEIN-EVRRDKLLEKR 126 + L++ G + +++E L++ + V L+ +++ RD + Sbjct: 61 LSARLARLGAPLVIR----YGEAVEVLEALSREVTVGSLWAHQETGNGVSFARDLRVHAW 116 Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 + R I P + ++ A + LPVPA+R Sbjct: 117 ARARGI-----------PFYEPPQQGVIRRMVNRDGWA-DAWEERMSAPPLPVPALRGVA 164 Query: 187 --PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIP--AIQGT 242 P + + + GE A IL F + + Y+ P A Sbjct: 165 GTPASLGVLDHAALRVPLGRRVIPQGGEAAAHDILESFLQRRGRDYMWAMSSPLTAEDAC 224 Query: 243 SQLSPYLSIGVLSPRQCW----NRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFY 298 S+LS L+ G +S R L + + + S+ + L WR+ + + Sbjct: 225 SRLSAPLAFGTVSARTVLLATRQALARAVAEQDAQWERSLRSFESRLHWRDHFIQRLESE 284 Query: 299 PSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITA 358 P + + E + + Q W++G TG+P+IDA MR L GW++ R+R + Sbjct: 285 PRMEFENLNRAYDGLREPHWNEEYFQRWQEGQTGYPLIDATMRMLRATGWLNFRMRAMLV 344 Query: 359 SFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRF 418 SF + L + WR + Q LD + + Q +G + RI++PT Q + Sbjct: 345 SFAAQHLWLHWRRPGLFLARQWLDNEPGIHWS--QMQMQSGTVGINRSRIYSPTRQAREQ 402 Query: 419 DPQGTFIRHWLPELNNVPTQYIHAPHSWLDKN------DLSLNYPLPIVD-HKKACHHTL 471 DP G FIR W+PEL VP +I P L +YP P+VD H A Sbjct: 403 DPDGEFIRRWVPELAGVPAPHIWRPWELPPLAARGLGLRLGRDYPYPVVDEHAPARE-AH 461 Query: 472 NQYYAAKKQSLL 483 + A + L Sbjct: 462 RRLQAVRDTPLF 473 >gi|269961220|ref|ZP_06175588.1| conserved hypothetical protein [Vibrio harveyi 1DA3] gi|269834171|gb|EEZ88262.1| conserved hypothetical protein [Vibrio harveyi 1DA3] Length = 493 Score = 299 bits (765), Expect = 8e-79, Method: Composition-based stats. Identities = 117/487 (24%), Positives = 201/487 (41%), Gaps = 32/487 (6%) Query: 8 SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67 +++LVWL+ DLR+TD++ L A +S+ + ++I P SAR FI+ SL Sbjct: 3 TINLVWLKRDLRLTDHRPLQHAL-SSEHPTVLLYIVEPMLLDDPHYSARHWRFIWQSLQD 61 Query: 68 VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEIN-EVRRDKLLEKR 126 + ++LS G S I+ L + Q + +F +++ ++ RD+ + Sbjct: 62 MNETLSALGHQVSVMSGST----IDCLSAIQNQFNINAIFSHQEIGLDCTFERDQQVSAW 117 Query: 127 LQ-HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185 LQ H + F G+++ A + + + DL S + A+ Sbjct: 118 LQAHSIPWHEF------EHGAVIRGAKDRLGWDKHWDTVMRAEIEDIDLESASLIALDAK 171 Query: 186 GPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIP--AIQGTS 243 + + I M G A + F + + Y P + + Sbjct: 172 AL---GCLFTPPPSWLEKIKGMQTGGSSLAWQTMEDFFQRRGRDYYRSISSPTASRTACT 228 Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCM 303 +LSPYL+ G +S R+ + L + + + A S + L W + + Sbjct: 229 RLSPYLAWGNISLREVYQYLLQHWQVAGFRRSLIALS--SRLHWHCHFMQKFESECEMEF 286 Query: 304 ---GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASF 360 K + P ++ D+ LL AWK G TG P+IDA MR L+ G+++ R+R + SF Sbjct: 287 RYVNKAYDPLLQQASVR-DAALLDAWKSGTTGIPLIDACMRCLHHTGYINFRMRAMLVSF 345 Query: 361 LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDP 420 L + +DWR G + LD + + +Q G RI+NPT Q + D Sbjct: 346 LTHHMNMDWRDGVTHLAQLFLDFEPGIHYPQFQMQ--AGVTGTNTIRIYNPTKQAQEHDA 403 Query: 421 QGTFIRHWLPELNNVPTQYIHAPHSWLDKN----DLSLN--YPLPIVDHKKACHHTLNQY 474 G FI W+PEL VPT + P L + Y P V+ + + + Sbjct: 404 NGEFIHKWIPELAMVPTPLLFEPWKMTAMETVMYQLEPDSRYLAPFVNVEVSAKAARERL 463 Query: 475 YAAKKQS 481 +A +K++ Sbjct: 464 WAWRKRT 470 >gi|260778007|ref|ZP_05886900.1| deoxyribodipyrimidine photolyase/cryptochrome family protein [Vibrio coralliilyticus ATCC BAA-450] gi|260606020|gb|EEX32305.1| deoxyribodipyrimidine photolyase/cryptochrome family protein [Vibrio coralliilyticus ATCC BAA-450] Length = 487 Score = 299 bits (765), Expect = 8e-79, Method: Composition-based stats. Identities = 113/485 (23%), Positives = 205/485 (42%), Gaps = 28/485 (5%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 ++LVWL+ DLR+TD+ L AA SD + ++ P+ S R F++ SL Sbjct: 2 KKINLVWLKRDLRLTDHAPLNAAL-CSDTPTLIFYLFEPDLLANAHYSERHWRFVWQSLS 60 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEV-RRDKLLEK 125 + L+ C D + +L+ Q ++ L+ +++ ++ +RDK + K Sbjct: 61 DINGHLAPFNAKVMVGGC----DVLSFLEKMAKQFQIEALYSHQETGLDVTFQRDKQVLK 116 Query: 126 RLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185 + R I G+++ + K + + +++ ++++ S L Sbjct: 117 WCKDRQI-----SWYEFANGAVVRGCKER-KHWDKNWQRVMRAPIESNALSAGALLPNLN 170 Query: 186 GPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPA--IQGTS 243 + + + + G + L F +V +Y P+ + S Sbjct: 171 DDF--GIVFTPPEAWLSKVPGIQTGGVKVGWATLNDFFTRRVKHYYFSISSPSASREACS 228 Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCM 303 +LSPYL+ G LS R+ + L + D ++ ++ + L W + + Sbjct: 229 RLSPYLAWGNLSLREVYQFLLSHWNDKGMR--RSLIAFSSRLHWHCHFIQKFESEHQMEF 286 Query: 304 GKPFIPWTEKIEWN--KDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFL 361 + I+ + ++ L AWK+G TG+P++DA MR L G+++ R+R + SFL Sbjct: 287 RCVNRGYESLIQHSAKTNNDHLTAWKEGNTGYPLVDACMRCLAHTGYLNFRMRAMLVSFL 346 Query: 362 VKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQ 421 L DWR G + S LD + + +Q +G + RI+NPT Q DP Sbjct: 347 THHLAQDWRNGVAHLASLFLDFEPGIHYAQFQMQ--SGVTGINTIRIYNPTKQAIDHDPD 404 Query: 422 GTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLN------YPLPIVDHKKACHHTLNQYY 475 G FI+ W+PEL +VP + P L + Y PI+D A ++ + Sbjct: 405 GVFIKKWVPELKDVPISLLFEPWKMSAMEALMYDIEGSSIYLNPIIDLDTAGREARDRLW 464 Query: 476 AAKKQ 480 A KK+ Sbjct: 465 AWKKK 469 >gi|195389935|ref|XP_002053627.1| GJ24000 [Drosophila virilis] gi|194151713|gb|EDW67147.1| GJ24000 [Drosophila virilis] Length = 539 Score = 299 bits (765), Expect = 9e-79, Method: Composition-based stats. Identities = 123/515 (23%), Positives = 214/515 (41%), Gaps = 50/515 (9%) Query: 10 HLVWLRNDLRITDNKALYAACHNSDA--KVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67 +++W R+ LR+ DN AL AA + D +I +FI E + + F+ SL Sbjct: 7 NVIWFRHGLRLHDNPALLAALSDKDQGIALIPIFIFDGESAGTKSVGYNRMRFLLDSLQD 66 Query: 68 VQKSLSQ----KGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLL 123 + L + +G + + + R+ K+ + E RD+ Sbjct: 67 IDMQLQKATEGRGGLLMCQ-----GQPTQIFRRLHERVRLHKICVEQDCEPIWNERDEAT 121 Query: 124 EKRLQH-RVICKSFDDSVLLPPGSILNHALQMYKVYT------------PFRKALIQNLV 170 + + + L P ++++ + + P R N Sbjct: 122 KSLCRELNIEYVEKVSHTLWDPRTVIDTNGGIAPLTYQMFLHTVQIIGLPPRPIPDPNFE 181 Query: 171 QADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPM----FPIGEQNALHILRKFCKEK 226 + LP + G + + P F+ + + + GE AL +L + K + Sbjct: 182 GVSIAQLPQELRKDIGCLEKTPTPEDFNIYSDNMGYLAKMNWIGGETQALSLLGERLKVE 241 Query: 227 VY-----YYVEQRDIPAIQGTSQ-LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPK----- 275 + YY+ + +P I T + +S +L G LS R+ + + + F ++ ++ Sbjct: 242 QHAFERGYYLPNQALPNILETPKSMSAHLRFGCLSVRRFYWSMHDLFKNVQMRACVRGVQ 301 Query: 276 -SGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNK-DSHLLQAWKQGYTGF 333 +G +LIWRE++ + P + I W+K D+ LQ W+ G TGF Sbjct: 302 MTGGAHITGQLIWREYFYTMSVNNPQYDRMEG-NEICLSIPWSKPDADQLQRWRLGQTGF 360 Query: 334 PIIDAAMRQLNTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGW 392 P+ID+AMRQL GW+H+ LR A+FL + L +W +G E+F+ LLD D + G W Sbjct: 361 PLIDSAMRQLLAEGWLHHTLRNTVATFLTRGGLWQNWELGLEHFLKYLLDADWSVCAGNW 420 Query: 393 QWAASTGNDSVPYFR-IFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND 451 W +S+ + + + P KR DP G +I+ ++PEL NVP ++IH P + Sbjct: 421 MWVSSSAFERLLDSSLVTCPVALAKRLDPNGAYIKQYVPELKNVPKEFIHEPWRMSSEQQ 480 Query: 452 ------LSLNYPLPIVDHKKACHHTLNQYYAAKKQ 480 L +YP I+D A A + Sbjct: 481 ERYECLLGFHYPQRIIDLSLASKRNTMAMKALRNS 515 >gi|195569723|ref|XP_002102858.1| GD19278 [Drosophila simulans] gi|194198785|gb|EDX12361.1| GD19278 [Drosophila simulans] Length = 542 Score = 298 bits (764), Expect = 1e-78, Method: Composition-based stats. Identities = 118/515 (22%), Positives = 203/515 (39%), Gaps = 50/515 (9%) Query: 10 HLVWLRNDLRITDNKALYAACHNSDA--KVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67 +++W R+ LR+ DN AL AA + D +I VFI E + + F+ SL Sbjct: 7 NVIWFRHGLRLHDNPALLAALADKDQGIALIPVFIFDGESAGTKNVGYNRMRFLLDSLQD 66 Query: 68 VQKSLSQ----KGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLL 123 + L +G + + + Q R+ ++ + E RD+ + Sbjct: 67 IDDQLQAATDGRGRLLVFE-----GEPAYIFRRLHEQVRLHRICIEQDCEPIWNERDENI 121 Query: 124 EKRLQHR-VICKSFDDSVLLPPGSILNHALQMYKVYT------------PFRKALIQNLV 170 + + L P ++ + + P R L Sbjct: 122 RSLCRELSIDFVEKVSHTLWDPQLVIETNGGIPPLTYQMFLHTVQIIGLPPRPTADARLD 181 Query: 171 QADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPM----FPIGEQNALHILRKFCKEK 226 A L R +P F+ + + + GE AL +L + K + Sbjct: 182 DATFVELEPEFCRSLKLFEQLPMPEHFNVYGDNMGFLAKINWRGGETQALLLLDERLKVE 241 Query: 227 VYYYVEQRDIPAI------QGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPK----- 275 + + +P +S +L G LS R+ + + + F ++ ++ Sbjct: 242 QHAFERGFYLPNQALPNIHDSPKSMSAHLRFGCLSVRRFYWSVHDLFKNVQLRACVRGVQ 301 Query: 276 -SGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNK-DSHLLQAWKQGYTGF 333 +G +LIWRE++ + P+ + I W K + LLQ W+ G TGF Sbjct: 302 MTGGAHITGQLIWREYFYTMSVNNPNYDRMEG-NEICLSIPWAKPNEDLLQRWRLGQTGF 360 Query: 334 PIIDAAMRQLNTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGW 392 P+ID AMRQL GW+H+ LR A+FL + L W G ++F+ LLD D + G W Sbjct: 361 PLIDGAMRQLLAEGWLHHTLRNTVATFLTRGGLWQSWEHGLQHFLKYLLDADWSVCAGNW 420 Query: 393 QWAASTGNDSVPYFR-IFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND 451 W +S+ + + + P KR DP GT+I+ ++PEL NVP +Y+H P + Sbjct: 421 MWVSSSAFERLLDSSLVTCPVALAKRLDPDGTYIKQYVPELMNVPKEYVHEPWRMSAEQQ 480 Query: 452 ------LSLNYPLPIVDHKKACHHTLNQYYAAKKQ 480 + ++YP I+D A + + + Sbjct: 481 EQYECLIGVHYPERIIDLSMAVKRNMLAMKSLRNS 515 >gi|126735513|ref|ZP_01751258.1| putative deoxyribodipyrimidine photolyase [Roseobacter sp. CCS2] gi|126714700|gb|EBA11566.1| putative deoxyribodipyrimidine photolyase [Roseobacter sp. CCS2] Length = 505 Score = 298 bits (763), Expect = 1e-78, Method: Composition-based stats. Identities = 99/493 (20%), Positives = 180/493 (36%), Gaps = 32/493 (6%) Query: 1 MKATTA--MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQS 58 M A + + +VW + DLR+ D+ L A V+ +++ PE W +S RQ Sbjct: 1 MPAENSPPRPLTVVWFKRDLRLHDHAPLSQAAQAG--TVLPLYVIEPEYWALPDVSYRQW 58 Query: 59 HFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEV- 117 F ++ +Q+ ++ G + ++ L L +++ Sbjct: 59 RFWAGAIADLQQQIATLGGQLCLRSGAV----VDVLSQLRADYGPFDLVAHQETGNAWTF 114 Query: 118 RRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSL 177 RD + + + G+ L+ + L D + Sbjct: 115 ARDNAVRDWCHRNGADFTEHQQHGIWRGAALDRNRWAKRWDAMMAAPLTPIPSDIDWARV 174 Query: 178 PVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIP 237 A+ + ++ I M G A L F ++ Y + P Sbjct: 175 TSDALPDAAALGLTD---------DGIVAMQSPGLAAARATLDSFLHDRGAPYQKAMSSP 225 Query: 238 --AIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLN-------ELIWR 288 S+LSP+L G +S R+ + + PK+ +W + L W Sbjct: 226 VSGETACSRLSPHLMAGSISMREVYQATLARQSAVAALPKADRGTWPSAMKSFVGRLHWH 285 Query: 289 EFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGW 348 + + P + + DS LL A+++G TG+P +DA MR L GW Sbjct: 286 CHFMQKLEAEPEIEWLPMARIYEGLRPTPTDSSLLSAFEEGRTGYPFVDACMRYLRATGW 345 Query: 349 MHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRI 408 ++ R+R + SF +L + W+ D + + Q +G + RI Sbjct: 346 INFRMRAMLMSFASYNLWLPWQQSGTVLARLFTDYEPGIHWPQSQMQ--SGETGINAVRI 403 Query: 409 FNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACH 468 ++P QG DP G F R W+PEL ++ + + P + + L YP IVDH++ Sbjct: 404 YSPVKQGYDQDPTGVFTRQWVPELAHLTGKALQDPWTL---DALPKGYPARIVDHQQTAR 460 Query: 469 HTLNQYYAAKKQS 481 + Y ++ + Sbjct: 461 EAKQRIYGLRRTA 473 >gi|91223149|ref|ZP_01258415.1| deoxyribodipyrimidine photolyase, putative [Vibrio alginolyticus 12G01] gi|91191962|gb|EAS78225.1| deoxyribodipyrimidine photolyase, putative [Vibrio alginolyticus 12G01] Length = 493 Score = 298 bits (763), Expect = 1e-78, Method: Composition-based stats. Identities = 113/487 (23%), Positives = 198/487 (40%), Gaps = 32/487 (6%) Query: 8 SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67 ++++VWL+ DLR+TD++ L A V+ ++I P S R F++ SL Sbjct: 3 TINVVWLKRDLRLTDHQPLTQALSTKHPTVL-LYIVEPLLLNNPHYSERHWRFVWQSLQD 61 Query: 68 VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEIN-EVRRDKLLEKR 126 + ++L G FDD++ S Q ++ +F +R+ +N RD+ + Sbjct: 62 MDETLKAYGHRITVL----FDDALACFQSIQAQYQINAVFSHREIGLNCTFERDRQVAAW 117 Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 L + I D G+++ A+ + + ++ +L++ + Sbjct: 118 LYEQNI-----DWFEFEHGAVIRGAINRQGWDKHWDSVMRASISPIELQT---DLLHSLD 169 Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIP--AIQGTSQ 244 M G + A L F + Y P + ++ Sbjct: 170 AEALGCSFSPPSSWLSKCKGMQTGGSRLAWKTLEDFFHRRGRDYYRSISSPTASRTACTR 229 Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPK----SGAFSWLNELIWREFYRHLMAFYPS 300 LSPYL+ G +S R+ + L + + + S W I + + M FY Sbjct: 230 LSPYLAWGNISLREVYQYLLKHWQVAGFRRSLIALSSRLHWHCHFIQKFESEYDMEFY-- 287 Query: 301 VCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASF 360 C+ + + P ++ D L AWK G+TG P+IDA MR L+ G+++ R+R + SF Sbjct: 288 -CVNRAYEPLIKQSS-TFDEEKLAAWKSGHTGVPLIDACMRCLHHTGYINFRMRAMLVSF 345 Query: 361 LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDP 420 L + +DWR+G + LD + + +Q G RI+NP Q + DP Sbjct: 346 LTHHMNMDWRVGVTHLAQLFLDFEPGIHYPQFQMQ--AGVTGTNTIRIYNPIKQAQEHDP 403 Query: 421 QGTFIRHWLPELNNVPTQYIHAPHSWLDKNDL------SLNYPLPIVDHKKACHHTLNQY 474 GTFI W+PEL VP + P + + Y PI+ KA + Sbjct: 404 NGTFIYKWVPELQMVPPPLLFEPWTMTQMEAVMYQLQPDSRYLAPIIAPDKAAKAARERL 463 Query: 475 YAAKKQS 481 + +K++ Sbjct: 464 WTWRKRA 470 >gi|7648568|gb|AAF65584.1|AF139916_5 hypothetical DNA photolyase [Brevibacterium linens] Length = 487 Score = 298 bits (762), Expect = 2e-78, Method: Composition-based stats. Identities = 144/509 (28%), Positives = 214/509 (42%), Gaps = 62/509 (12%) Query: 3 ATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIA---TPEQWRQHGISARQSH 59 +T+ + LVW R+DLR+ D++AL AA +D +VIAV+I E + Sbjct: 2 STSGEDLTLVWFRDDLRVADHEALTAA--RADGRVIAVWIRETRDEEGLGPRPLGGACRW 59 Query: 60 FIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRR 119 + + SL + + LS GI + + + + VT + + R+Y Sbjct: 60 WAHESLTVLHEELSDLGIPLLF----AAGRAEKIIVQLASSLGVTAVRWTRRYASASRAL 115 Query: 120 DKLLEKRLQHRV-ICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSL- 177 D ++ L + S ++L+ P + + YKV+TPF KA+ V L Sbjct: 116 DGQIKTVLNDQGFTVHSHTGALLVEPWTAAPQSSDHYKVFTPFWKAVAGRDVGDVLPKPQ 175 Query: 178 ---PVPAIRLTGPVTPSNIPRFFDYPF---------------------QAIDPMFPIGEQ 213 P+ L+ + I + G + Sbjct: 176 AQSPLSQTLLSRAHECPAVMELDGLGLLDGTETGAGEAAAASGPRWWQDTIAGHWSPGLR 235 Query: 214 NALHILRKFCKEKVYYYVEQRDIPA-IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLI 272 A L + Y +D+P+ TS+LSP L G LSPRQ + Sbjct: 236 AAEDQLDD-LSAIIDGYTTSKDVPSDAASTSRLSPRLRHGELSPRQLLQAART----TSS 290 Query: 273 KPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTG 332 + +W+ +L WREF HL YP + P P + D L W+ G TG Sbjct: 291 LTQDDRAAWIRQLYWREFSWHLTYHYPHI-DSAPIRPEFHNFPYEDDDDALTHWRAGTTG 349 Query: 333 FPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGW 392 +P+IDA M QL GWMHNR+RM+TASFL K+LL W GE++F L+D D A+N W Sbjct: 350 YPLIDAGMAQLWQTGWMHNRVRMVTASFLTKNLLQHWWFGEQWFWDTLVDADEANNPVSW 409 Query: 393 QWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDL 452 QW A +G D+ PYFR+FNP Q +RFDP +I WLP + Sbjct: 410 QWVAGSGADAAPYFRVFNPERQRERFDPDDAYIEDWLPYTPATAPPPL------------ 457 Query: 453 SLNYPLPIVDHKKACHHTLNQYYAAKKQS 481 VD +++ L+ Y K +S Sbjct: 458 --------VDLRQSRQAALSAYDHMKNRS 478 >gi|302915963|ref|XP_003051792.1| predicted protein [Nectria haematococca mpVI 77-13-4] gi|256732731|gb|EEU46079.1| predicted protein [Nectria haematococca mpVI 77-13-4] Length = 639 Score = 298 bits (762), Expect = 2e-78, Method: Composition-based stats. Identities = 127/556 (22%), Positives = 198/556 (35%), Gaps = 84/556 (15%) Query: 6 AMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASL 65 + W R DLR+ D+ AL AA A + +F P + + F+ Sbjct: 2 GKPRVIYWFRTDLRLHDSPALKAALDLDPAVLWPIFTWDPHYVYRARGGLNRWQFLLDCQ 61 Query: 66 LQVQKSLSQKG--IVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLL 123 + KS+++ + + +VT L + + + RD ++ Sbjct: 62 NDLSKSITKLNPKSKLLLLR----EAPQTLFPKLFKAWKVTHLVFEKDTDSYARERDDVV 117 Query: 124 EKRLQHR---VICKS----FDDSVLLPP-------------------GSILNHALQMYKV 157 + + VI ++ +D ++ G + + Sbjct: 118 TRAAKEAGVEVIVRTGRTLWDSDQIVEKHGGKPTMSITQLQQAGARLGEVRKPIPAPKHL 177 Query: 158 YTPFRKALIQNLVQADLRSLPVPAIR---------LTGPVTPSNIPRFFDYPFQAIDPMF 208 P + Q + R + GP I + F + Sbjct: 178 PDPGEMPVDFEQEQPKTKPDFNSEQRTEKDQTYTKIAGPNGDFAIETMEELGFPSATTPH 237 Query: 209 PIGEQNALHILRKFCKEKVY--YYVEQRDIPAI---QGTSQLSPYLSIGVLSPRQCWNRL 263 GE AL L K +K Y + + + PA Q T+ LSP+L G LS R+ + R+ Sbjct: 238 RGGETLALEALDKIIADKKYTAKFEKPKTSPARFEPQSTTLLSPFLHFGALSVREFYWRV 297 Query: 264 KEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWN----KD 319 +E + S + +L++R+ Y A V M P I W+ +D Sbjct: 298 QEVVDAYGKGASTPPESLIGQLLFRDMYFAAQAALGDVFMQTVKNPHCRFIPWHLPSKRD 357 Query: 320 SH-----------------LLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLV 362 + WK G TGFP IDA MRQL GW+H+ R A FL Sbjct: 358 PKTGLVTGEYHVDSEEADIWFKRWKTGMTGFPWIDALMRQLKEEGWIHHLGRHAVACFLT 417 Query: 363 K-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQ 421 + +DW G E F L+D + A N G WQW S YFR ++P G+++D Q Sbjct: 418 RGGCYIDWERGCEVFEEWLIDHEPACNAGNWQW-LSCTAFFSQYFRCYSPVSFGQKWDKQ 476 Query: 422 GTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLN---------------YPLPIVDHKKA 466 G FIR ++PEL N+ +YI+ P + YP P+ D K Sbjct: 477 GDFIRRYVPELKNMDAKYIYEPWKAPLPDQKKAGVRVKGDGLNDVQEGTYPKPMFDFSKR 536 Query: 467 CHHTLNQYYAAKKQSL 482 L A K L Sbjct: 537 RDACLAAMKTAYKVGL 552 >gi|24648152|ref|NP_732407.1| cryptochrome [Drosophila melanogaster] gi|74960862|sp|O77059|CRY1_DROME RecName: Full=Cryptochrome-1; Short=DmCRY1; Short=dcry; AltName: Full=Blue light photoreceptor gi|3724370|dbj|BAA33787.1| blue-light receptor [Drosophila melanogaster] gi|3983154|gb|AAC83828.1| cryptochrome [Drosophila melanogaster] gi|7300494|gb|AAF55649.1| cryptochrome [Drosophila melanogaster] gi|15291339|gb|AAK92938.1| GH16672p [Drosophila melanogaster] gi|220945540|gb|ACL85313.1| cry-PA [synthetic construct] gi|220955344|gb|ACL90215.1| cry-PA [synthetic construct] Length = 542 Score = 297 bits (761), Expect = 2e-78, Method: Composition-based stats. Identities = 114/515 (22%), Positives = 201/515 (39%), Gaps = 50/515 (9%) Query: 10 HLVWLRNDLRITDNKALYAACHNSDA--KVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67 +++W R+ LR+ DN AL AA + D +I VFI E + + F+ SL Sbjct: 7 NVIWFRHGLRLHDNPALLAALADKDQGIALIPVFIFDGESAGTKNVGYNRMRFLLDSLQD 66 Query: 68 VQKSLSQ----KGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLL 123 + L +G + + + Q R+ ++ + E RD+ + Sbjct: 67 IDDQLQAATDGRGRLLVFE-----GEPAYIFRRLHEQVRLHRICIEQDCEPIWNERDESI 121 Query: 124 EKRLQH-RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAI 182 + + L P ++ + + +Q + + Sbjct: 122 RSLCRELNIDFVEKVSHTLWDPQLVIETNGGIPPLTYQMFLHTVQIIGLPPRPTADARLE 181 Query: 183 RLTGPVTPSNIPRFFDYPFQAIDPM----------------FPIGEQNALHILRKFCKEK 226 T R Q P + GE AL +L + K + Sbjct: 182 DATFVELDPEFCRSLKLFEQLPTPEHFNVYGDNMGFLAKINWRGGETQALLLLDERLKVE 241 Query: 227 VYYYVEQRDIPAI------QGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPK----- 275 + + +P +S +L G LS R+ + + + F ++ ++ Sbjct: 242 QHAFERGFYLPNQALPNIHDSPKSMSAHLRFGCLSVRRFYWSVHDLFKNVQLRACVRGVQ 301 Query: 276 -SGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNK-DSHLLQAWKQGYTGF 333 +G +LIWRE++ + P+ + I W K + +LLQ+W+ G TGF Sbjct: 302 MTGGAHITGQLIWREYFYTMSVNNPNYDRMEG-NDICLSIPWAKPNENLLQSWRLGQTGF 360 Query: 334 PIIDAAMRQLNTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGW 392 P+ID AMRQL GW+H+ LR A+FL + L W G ++F+ LLD D + G W Sbjct: 361 PLIDGAMRQLLAEGWLHHTLRNTVATFLTRGGLWQSWEHGLQHFLKYLLDADWSVCAGNW 420 Query: 393 QWAASTGNDSVPYFR-IFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND 451 W +S+ + + + P KR DP GT+I+ ++PEL NVP +++H P + Sbjct: 421 MWVSSSAFERLLDSSLVTCPVALAKRLDPDGTYIKQYVPELMNVPKEFVHEPWRMSAEQQ 480 Query: 452 ------LSLNYPLPIVDHKKACHHTLNQYYAAKKQ 480 + ++YP I+D A + + + Sbjct: 481 EQYECLIGVHYPERIIDLSMAVKRNMLAMKSLRNS 515 >gi|195451205|ref|XP_002072813.1| GK13802 [Drosophila willistoni] gi|194168898|gb|EDW83799.1| GK13802 [Drosophila willistoni] Length = 543 Score = 297 bits (761), Expect = 2e-78, Method: Composition-based stats. Identities = 118/514 (22%), Positives = 203/514 (39%), Gaps = 54/514 (10%) Query: 3 ATTAMSVHLVWLRNDLRITDNKALYAACHNSDA--KVIAVFIATPEQWRQHGISARQSHF 60 A +++W R+ LR+ DN AL +A + D +I +FI E + + F Sbjct: 2 ANVTCGANVIWFRHGLRLHDNPALLSALADKDQGIALIPIFIFDGESAGTKDVGYNRMRF 61 Query: 61 IYASLLQV----QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINE 116 + SL + Q++ +G Q E Q ++ K+ + + E Sbjct: 62 LLDSLQDLDGKVQQATEGRG-RLHIFQG----QPKEIFRRLHQQLQLKKICFEQDCEPIW 116 Query: 117 VRRDKLLEKRLQH-RVICKSFDDSVLLPPGSIL-NHALQMYKVYTPFRKALIQNLVQADL 174 +RD ++ Q + L P +++ + Y F + ++ Sbjct: 117 SQRDASVKSLCQELGIEWVEMVSHTLWDPHTVIETNGGIPPLTYQMFLHTVE--IIGLPP 174 Query: 175 RSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPM-----------------FPIGEQNALH 217 R P G V S + Q + GE AL Sbjct: 175 RPTNDPNWNNVGFVEISQELQRELKYLQHFPTPEYFNIYCDNMGYLAKINWRGGETEALL 234 Query: 218 ILRKFCKEKVYYYVEQRDIPA------IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLL 271 +L++ K + + +P + +SP+L G LS R+ + + + F ++ Sbjct: 235 LLQERLKVEQSAFERGYYLPNQALPNILDTPKSMSPHLRFGCLSVRRFYWNVHDLFKNVQ 294 Query: 272 IKPK------SGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNK-DSHLLQ 324 ++ +G +LIWRE++ + + I W+K L+ Sbjct: 295 LQACVRGVQMTGGSHITGQLIWREYFYTMSVNNSNYDRMDG-NEICLNIPWSKPHEEKLE 353 Query: 325 AWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDG 383 W+ G TGFP+ID AMRQL GW+H+ LR A+FL + L W G ++F+ LLD Sbjct: 354 RWRLGQTGFPLIDGAMRQLLAEGWLHHTLRNTVATFLTRGGLWQSWEHGVQHFLKYLLDA 413 Query: 384 DLASNNGGWQWAASTGNDSVPYFR-IFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHA 442 D + G W W +S+ + + + KR DP G +I+ ++PEL NVP +YIH Sbjct: 414 DWSVCAGNWMWVSSSAFERLLDSSLVTCSQAMAKRLDPDGLYIKQYVPELRNVPKEYIHE 473 Query: 443 PHSWLDKND------LSLNYPLPIVDHKKACHHT 470 P ++ + ++YP PI+D A Sbjct: 474 PWRMSAEDQERYECLIGVHYPEPIIDLSLALKRN 507 >gi|119945274|ref|YP_942954.1| deoxyribodipyrimidine photo-lyase [Psychromonas ingrahamii 37] gi|119863878|gb|ABM03355.1| Deoxyribodipyrimidine photo-lyase [Psychromonas ingrahamii 37] Length = 517 Score = 297 bits (761), Expect = 2e-78, Method: Composition-based stats. Identities = 119/500 (23%), Positives = 199/500 (39%), Gaps = 37/500 (7%) Query: 1 MKATTAMS-------VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGI 53 M A A + V++VWL+ DLR++D++ L + + + ++ P Sbjct: 1 MAANIAATNIRADSVVNIVWLKRDLRLSDHQPLSESIQSG--LTLLYYVFEPLLIADPHY 58 Query: 54 SARQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYE 113 R FI+ S+ + LS + F D++ L+ + +T LF + + Sbjct: 59 DKRHWRFIWQSIEDINTQLSAFNAQIYVY----FGDAVAGLNEIQQRFNITGLFSHEEVG 114 Query: 114 INEV-RRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQA 172 + RDK + K + + I S G++ +RK + L Q Sbjct: 115 LLSTFERDKAVNKWCKAQNIVWHESAS-----GAVTRGKKNRNNWDKDWRKIMKAELCQP 169 Query: 173 DLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVE 232 L + + + + +P + P D M GE A +L+ F + Y Sbjct: 170 ALSCNTLLSKQCLERLPQFILPVSWSTP---DDFMLKGGELWAQKMLQSFLNGRGKNYHF 226 Query: 233 QRDIP--AIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIK----PKSGAFSWLNELI 286 P + + S+LSPYL+ G +S RQ + + + K + W I Sbjct: 227 DISKPQASRKSCSRLSPYLAWGNISLRQFYQIILMKRPQNGWKRPIDALASRLHWHCHFI 286 Query: 287 WREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTI 346 + H M + P V + + L WK TG+P++DA M L Sbjct: 287 QKFESEHQMQWRP-VNRAYSNFSYPDLHCGLSVETRLNKWKTAQTGYPLVDACMLCLIKT 345 Query: 347 GWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYF 406 G+++ R+R + SFL LL+DWR+G Y LD + + +Q +G Sbjct: 346 GYINFRMRAMLVSFLCHHLLLDWRLGVSYLAKLFLDFEPGIHYPQFQMQ--SGVTGTNII 403 Query: 407 RIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSW------LDKNDLSLNYPLPI 460 R++NP Q D G FIR WLP+L+ +P + IH P L + L YPLPI Sbjct: 404 RVYNPVKQSLEKDKDGLFIRTWLPQLSELPNEIIHTPWQLSPMEQQLYQCQLGETYPLPI 463 Query: 461 VDHKKACHHTLNQYYAAKKQ 480 VD + + + +K+ Sbjct: 464 VDINETGKIARDLLWGFRKR 483 >gi|332668099|ref|YP_004450887.1| DNA photolyase FAD-binding protein [Haliscomenobacter hydrossis DSM 1100] gi|332336913|gb|AEE54014.1| DNA photolyase FAD-binding protein [Haliscomenobacter hydrossis DSM 1100] Length = 501 Score = 297 bits (761), Expect = 2e-78, Method: Composition-based stats. Identities = 111/482 (23%), Positives = 196/482 (40%), Gaps = 26/482 (5%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 +++VWL+ DLR+ D+ L AA N + +F P R F++ SL + Sbjct: 6 INIVWLKRDLRLRDHDPLAAAIDNG-LPTLLLFCFEPSLMACPESDVRHWRFVFESLADL 64 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEV-RRDKLLEKRL 127 Q L + +EW+ + ++ +++ + + I RDK ++K Sbjct: 65 QNRLKIREKQLYAVHQEVI-TVLEWITDF---YQIQQVYSHEEVGIKITFDRDKAVKKWC 120 Query: 128 QHRVIC-KSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 + I + F + ++ L++ + T A +L + S+ + Sbjct: 121 TEQGIAYQEFPQNGIIRGRKHRQGWLKLLEKSTFKASATKVDLEKLQTLSIDPVLLEKFT 180 Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPA--IQGTSQ 244 ++ + + FQ GE A + F +E+ Y Q PA S+ Sbjct: 181 TAPLPSVIQSYQEGFQR------GGETYAWRYFQSFLQERSKNYNRQLSKPAGSRTSCSR 234 Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304 LSPYL+ G +S R+ L + + + L WR + + V + Sbjct: 235 LSPYLAFGCISAREVMQHLDAHLSQSADRWNLNN--FRSRLWWRSHFIQKLETDWRVEIA 292 Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364 P P +++ D +AW QG TGFP++DA+MR L GW++ R+R + SF Sbjct: 293 -PINPVFVQLDRQMDGPWFEAWAQGKTGFPMVDASMRCLQATGWINFRMRAMLVSFATFV 351 Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424 L +DWR + LD + + Q G R++NP+ Q + DP G F Sbjct: 352 LWLDWRPVATHLARLFLDFEPGIHYPQIQMQ--AGLTGYHTLRMYNPSTQVTKNDPDGIF 409 Query: 425 IRHWLPELNNVPTQYIHAPHSWLDKND------LSLNYPLPIVDHKKACHHTLNQYYAAK 478 I+ W+PEL VP+ + P + +YP+P+VD K ++Y+ + Sbjct: 410 IKKWVPELQAVPSTLLAEPWKMTPMEQKFYHCSIGSDYPVPLVDFDKVAAQNKDRYWQIR 469 Query: 479 KQ 480 + Sbjct: 470 QS 471 >gi|195353691|ref|XP_002043337.1| GM26830 [Drosophila sechellia] gi|194127451|gb|EDW49494.1| GM26830 [Drosophila sechellia] Length = 542 Score = 297 bits (761), Expect = 2e-78, Method: Composition-based stats. Identities = 114/515 (22%), Positives = 199/515 (38%), Gaps = 50/515 (9%) Query: 10 HLVWLRNDLRITDNKALYAACHNSDA--KVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67 +++W R+ LR+ DN AL AA + D +I VFI E + + F+ SL Sbjct: 7 NVIWFRHGLRLHDNPALLAALADKDQGIAIIPVFIFDGESAGTKNVGYNRMRFLLDSLQD 66 Query: 68 VQKSLSQ----KGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLL 123 + L +G + + + Q R+ ++ + E RD+ + Sbjct: 67 IDDQLQAATDGRGRLLVFE-----GEPAYIFRRLHEQLRLHRICIEQDCEPIWNERDESI 121 Query: 124 EKRLQHR-VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAI 182 + + L P ++ + + +Q + + Sbjct: 122 RSLCRELSIDFVEKVSHTLWDPQLVIETNGGIPPLTYQMFLHTVQIIGLPPRPTADARLD 181 Query: 183 RLTGPVTPSNIPRFFDYPFQAIDPM----------------FPIGEQNALHILRKFCKEK 226 T R Q P + GE AL +L + K + Sbjct: 182 DATFVELDPEFCRSLKLFDQLPTPEHFNVYGDNMGFLAKINWRGGETQALLLLDERLKVE 241 Query: 227 VYYYVEQRDIPAI------QGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPK----- 275 + + +P +S +L G LS R+ + + + F ++ ++ Sbjct: 242 QHAFERGFYLPNQALPNIHDSPKSMSAHLRFGCLSVRRFYWSVHDLFKNVQLRACVRGVQ 301 Query: 276 -SGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNK-DSHLLQAWKQGYTGF 333 +G +LIWRE++ + P+ + I W K + LLQ W+ G TGF Sbjct: 302 MTGGAHITGQLIWREYFYTMSVNNPNYDRMEG-NEICLSIPWAKPNEDLLQRWRLGQTGF 360 Query: 334 PIIDAAMRQLNTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGW 392 P+ID AMRQL GW+H+ LR A+FL + L W G ++F+ LLD D + G W Sbjct: 361 PLIDGAMRQLLAEGWLHHTLRNTVATFLTRGGLWQSWEHGLQHFLKYLLDADWSVCAGNW 420 Query: 393 QWAASTGNDSVPYFR-IFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND 451 W +S+ + + + P KR DP GT+I+ ++PEL NVP +++H P + Sbjct: 421 MWVSSSAFERLLDSSLVTCPVALAKRLDPDGTYIKQYVPELMNVPKEFVHEPWRMSAEQQ 480 Query: 452 ------LSLNYPLPIVDHKKACHHTLNQYYAAKKQ 480 + ++YP I+D A + + + Sbjct: 481 EQYECLIGVHYPERIIDLSMAVKRNMLAMKSLRNS 515 >gi|315658957|ref|ZP_07911824.1| deoxyribodipyrimidine photolyase [Staphylococcus lugdunensis M23590] gi|315496081|gb|EFU84409.1| deoxyribodipyrimidine photolyase [Staphylococcus lugdunensis M23590] Length = 460 Score = 297 bits (760), Expect = 3e-78, Method: Composition-based stats. Identities = 146/478 (30%), Positives = 227/478 (47%), Gaps = 30/478 (6%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M++ LV L R+ N + +++ A + + P + + + + F + ++ Sbjct: 1 MNIALV-LNRVFRLEQNPM-FEYLNHNQADIERCYCVIPLELFE-DEAPLKRTFYHQAVT 57 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKL--LE 124 Q + L + GI F S+C Q+ + + + + ++ Sbjct: 58 QFIQQLIEIGI-------KPFVFPYTAFASFCEQKEIDTVVFPSDIMSFHNCECDILHVK 110 Query: 125 KRLQHRVIC-KSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIR 183 +Q + I + + P LN Q YKV+T F KA L Q + ++ Sbjct: 111 SEIQAQKIAIVNVRANHYFQPSRTLNQQGQPYKVFTSFYKANRPQLRQRRRYPYQLDKLK 170 Query: 184 LTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS 243 I + + + IGE + + F + +Y R+ TS Sbjct: 171 -------QQIINADNTSVKKVTEHINIGEAKSQQQWQAFLNNNIEHYQYYREYLPETLTS 223 Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCM 303 QLS L+ G L + +L E + D + +++ EL++REFY LM +YP Sbjct: 224 QLSIALAYGFLDINEIMRQLLERYHD----NEENYEAFIRELLFREFYYVLMVYYPETA- 278 Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363 F + I W+++ AWK+G TG+PIIDAAM +L G+MHNR+RM+TA FL K Sbjct: 279 HTSFNDKYKHITWSENQSDFNAWKEGRTGYPIIDAAMHELKQTGFMHNRMRMVTAQFLTK 338 Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423 +L +DW GE YF + L+D D ASN GWQW+ASTG D+VPYFR+FNP Q +RFD +G Sbjct: 339 ELFIDWTWGENYFKNLLIDYDAASNVHGWQWSASTGTDAVPYFRMFNPIRQSERFDKKGL 398 Query: 424 FIRHWLPELNNVPTQYIHAPHSWLDK-----NDLSLNYPLPIVDHKKACHHTLNQYYA 476 +I+ +LP+ NVP Y+H P DL NYP PIVDH++A H + Q+ Sbjct: 399 YIKTYLPQWANVPASYVHEPWKHAQTLKDYGIDLGTNYPWPIVDHQQARAHVMEQFKK 456 >gi|255574121|ref|XP_002527976.1| DNA photolyase, putative [Ricinus communis] gi|223532602|gb|EEF34388.1| DNA photolyase, putative [Ricinus communis] Length = 578 Score = 297 bits (760), Expect = 3e-78, Method: Composition-based stats. Identities = 131/515 (25%), Positives = 220/515 (42%), Gaps = 68/515 (13%) Query: 1 MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGI------S 54 M +VW RNDLRI DN+ L+ A +S+A V+ V+ P ++ Sbjct: 49 MATRHGKGTAIVWFRNDLRILDNEVLFKAWLSSEA-VLPVYCVDPRLFQTTHYFGFPKTG 107 Query: 55 ARQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEI 114 A ++ FI L ++K+L ++G+ E L S ++ +++ Sbjct: 108 ALRAQFIIECLADLKKNLMKRGLNLLIRHGKPE----EVLPSLAQAFAAHTVYAHKETCS 163 Query: 115 NEVRRDKLLEKRLQHRVIC----------------KSFDDSVLLPPGSILNHALQMYKVY 158 EV +KL+ K L HRV + S + + + + + Sbjct: 164 EEVHVEKLMNKAL-HRVKLSPPPDSKASANTTPKLQLIWGSTMYHIDDLPFNITSLPDDF 222 Query: 159 TPFRKALI------------------QNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYP 200 FRKA I ++ ++ P P + G V + + Sbjct: 223 FDFRKARIIPFFMLLMLQIVEPKCAVRSCIKIPKSLAPPPTVEDWGCVPSIHQLGLEEQK 282 Query: 201 FQAIDPMFPIGEQNALHILRKFCKEKVYY---------------YVEQRD-IPAIQGTSQ 244 + + F GE A+ + ++ +K Y E R+ + + +++ Sbjct: 283 ARGMR--FLGGESAAISRVYEYLWKKASGICLLNLHCCSDLAKTYKETRNGLLGLDYSTK 340 Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304 SP+L+ G LSPR + +K + L + ++ L+WR+ +R + Sbjct: 341 FSPWLAQGSLSPRFIYEEVKRYERERLANDSTHRVLFV--LLWRDHFRFFSIKCGNSIFH 398 Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364 P W++D L ++W+ G TG+P+IDA M++L+ G+M NR RMI SFLV+D Sbjct: 399 LGG-PRNVAQRWSQDQRLFESWRDGRTGYPLIDANMKELSATGFMSNRGRMIVCSFLVRD 457 Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424 + VDWR+G E+F + LLD D SN G W + A GND+ R F+ Q + FDP+G + Sbjct: 458 MGVDWRMGAEWFETCLLDYDPCSNYGNWTYGAGIGNDNRE-DRYFSIPKQAQSFDPEGEY 516 Query: 425 IRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLP 459 + +WLPEL + H P + + L Y P Sbjct: 517 VAYWLPELRKLQKDKRHFPGMSYVERIVPLKYGNP 551 >gi|91217399|ref|ZP_01254359.1| putative deoxyribodipyrimidine photolyase [Psychroflexus torquis ATCC 700755] gi|91184507|gb|EAS70890.1| putative deoxyribodipyrimidine photolyase [Psychroflexus torquis ATCC 700755] Length = 485 Score = 296 bits (758), Expect = 5e-78, Method: Composition-based stats. Identities = 109/484 (22%), Positives = 196/484 (40%), Gaps = 38/484 (7%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 V++VW + DLR+ D+ L+ A V+ ++I P + S R FI SL + Sbjct: 2 VNVVWFKRDLRLQDHAPLHLALQKKQ-PVLLLYIFEPILLKDSHYSERHFRFIKESLRDI 60 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEV-RRDKLLEKRL 127 QK L + ++ + + Q + +F +++ + +RDK L+ Sbjct: 61 QKQLEA----YHTQVLIVEGNAEDVFKTIHQQLTIKSVFSHQETGLQITFKRDKNLKLLF 116 Query: 128 QHR-VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIR--- 183 + + K F ++ ++ LQ K + + + + SL + Sbjct: 117 KSLSIQWKEFVNNGVI-------RGLQNRKTWINLWENFMSQDLLYFSASLGQFENQNQI 169 Query: 184 --LTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIP--AI 239 L G ++P ++ + FQ G AL L+ F +++ Y + P A Sbjct: 170 DSLKGQLSPVDLSTERNLNFQ------KGGRPTALRYLKGFLQDRYPNYQKNISKPLLAR 223 Query: 240 QGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYP 299 + S+LSPY++ GVLS R+ E + K K + + L W+ + Sbjct: 224 KSCSRLSPYIAWGVLSMREVIQASIE--IQDKTKHKQALSQFQSRLRWQAHFIQKFEMEY 281 Query: 300 SVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITAS 359 + F +E + L +AWK+G TGFP++DA+M+ L G+++ R+R + S Sbjct: 282 H-AEFQNFNSAFNVLEKPYNKALAEAWKKGETGFPLVDASMKCLIQTGYLNFRMRALLVS 340 Query: 360 FLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFD 419 F L W+ + S LD + + Q G + RI+NP + D Sbjct: 341 FFTHLLWQTWQEASSHLASLFLDFEPGIHYPQLQMQ--AGTTGIHTLRIYNPVKNSYKHD 398 Query: 420 PQGTFIRHWLPELNNVPTQYIHAPHSWLDKN------DLSLNYPLPIVDHKKACHHTLNQ 473 G FI +LP L +P +++H P +L +YP PI++ H + Sbjct: 399 LDGEFILTYLPSLKGIPLEFVHEPWKLTAMEQSMYNFELGKDYPRPIIEMATTRQHASDS 458 Query: 474 YYAA 477 + Sbjct: 459 IWKI 462 >gi|194744725|ref|XP_001954843.1| GF16541 [Drosophila ananassae] gi|190627880|gb|EDV43404.1| GF16541 [Drosophila ananassae] Length = 542 Score = 296 bits (758), Expect = 6e-78, Method: Composition-based stats. Identities = 123/509 (24%), Positives = 207/509 (40%), Gaps = 42/509 (8%) Query: 10 HLVWLRNDLRITDNKALYAACHNSDA--KVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67 +++W R+ LR+ DN AL AA D ++ VFI E + + F+ SL Sbjct: 7 NVIWFRHGLRLHDNPALLAALAEKDQGIALLPVFIFDGESAGTKNVGYNRMRFLLDSLQD 66 Query: 68 VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127 + + + Q R+ K+ + E RD+ + Sbjct: 67 IDDQIQTL-TDGRGRLLLFEGKPEHIFRRLHEQLRLHKICLEQDCEPIWNHRDETIRSLC 125 Query: 128 QH-RVICKSFDDSVLLPPGSILNHALQMYKVYT------------PFRKALIQNLVQADL 174 + L P S++ + + P R L A Sbjct: 126 HELGIEFVEKVSHTLWNPQSVIETNGGIPPLTYQMFLHTVQILGLPPRPVNDARLEDASF 185 Query: 175 RSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPM----FPIGEQNALHILRKFCKEKVY-- 228 + +R G + P F+ + + + GE+ AL +L + K + + Sbjct: 186 VQMDPELLRNLGYLEQIPTPEHFNVYGDNMGFLSKIRWRGGERQALLLLDERLKVEQHAF 245 Query: 229 ---YYVEQRDIPAIQGTSQ-LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPK------SGA 278 YY+ + +P IQ T + +SP+L G LS R+ + + + F ++ ++ +G Sbjct: 246 EKGYYMPNQALPNIQETPKSMSPHLRFGCLSVRRFYWSVHDLFKNVQLRACVRGVQMTGG 305 Query: 279 FSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEW-NKDSHLLQAWKQGYTGFPIID 337 +LIWRE++ + P+ I W +D LQ W+ G TGFP+ID Sbjct: 306 AHITGQLIWREYFYTMSVNNPNYDRMDG-NEICLSIPWAKRDETQLQKWRLGQTGFPLID 364 Query: 338 AAMRQLNTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAA 396 AAMRQL GW+H+ LR A+FL + L W G ++F+ LLD D + G W W + Sbjct: 365 AAMRQLLAEGWLHHVLRNTVATFLTRGGLWQSWEHGVQHFLRYLLDADWSVCAGNWMWVS 424 Query: 397 STGNDSVPYFR-IFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND---- 451 S+ + + + P KR DP G +IR ++PEL NVP ++IH P + Sbjct: 425 SSAFERLLDSSLVTCPVALAKRLDPDGAYIRQYVPELKNVPREFIHEPWRMNLQQQEQYE 484 Query: 452 --LSLNYPLPIVDHKKACHHTLNQYYAAK 478 + ++YP ++D KA + + Sbjct: 485 CLIGVHYPDRLIDLSKAVKGNMLAMKTLR 513 >gi|224121408|ref|XP_002330820.1| predicted protein [Populus trichocarpa] gi|222872622|gb|EEF09753.1| predicted protein [Populus trichocarpa] Length = 552 Score = 296 bits (757), Expect = 7e-78, Method: Composition-based stats. Identities = 129/535 (24%), Positives = 218/535 (40%), Gaps = 72/535 (13%) Query: 1 MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQ-------HGI 53 M +VW RNDLR+ DN+ L+ A NS++ V+ V+ P ++ Sbjct: 28 MVKRNGKGAAIVWFRNDLRVLDNEVLFKAWVNSES-VLPVYCVDPRLFQASTCYFGFPKT 86 Query: 54 SARQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYE 113 + FI L+ ++K+L ++G+ E + + ++ ++ Sbjct: 87 GGLRGQFIVECLVDLKKNLMKRGLNLLIRHGKPE----EIIPALAKDFASHTVYAQKETC 142 Query: 114 INEVRRDKLLEKRLQHRVICKS-----------------FDDSVLLPPGSILNHALQMYK 156 EV +KL+ K L+ + S + + + Sbjct: 143 SEEVNVEKLVSKALRRVHLPHSTGRSTSQGSANSPTLQLVWGGTMYHLDDLPFSTNSIPD 202 Query: 157 VYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFP------- 209 VYT FRK++ + + +P Q + F Sbjct: 203 VYTQFRKSVEARCSIRSCAKISMSLGPAPRVEDWGCVPSIEQLGLQPQEAGFMFYLHVSK 262 Query: 210 -----IGEQNALHILRKFCKEKVYY--------------YVEQRD-IPAIQGTSQLSPYL 249 GE AL + ++ +K Y E R+ + +++ SP+L Sbjct: 263 GMRFLGGETAALSRVYEYFWKKASGNCFLLSLCLDFLKIYKETRNGMLGPDYSTKFSPWL 322 Query: 250 SIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIP 309 + G LSPR + +K L + L ELIWR+++R + Y + Sbjct: 323 ASGSLSPRFIYEEVKRYEKGRL--ANDSTYWVLFELIWRDYFRFISFKYGNSIFHIGGPR 380 Query: 310 WTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDW 369 E+ W++D L +W+ G TG+P+IDA M++L+ G+M NR R I SFLV+D+ +DW Sbjct: 381 NVER-RWSQDQRLFDSWRNGCTGYPLIDANMKELSATGFMSNRGRQIVCSFLVRDMGIDW 439 Query: 370 RIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWL 429 R+G E+F + LLD D SN G W + A GND R F+ Q + +DP+G ++ +WL Sbjct: 440 RMGAEWFETFLLDYDPCSNYGNWTYGAGVGNDPRE-DRYFSIPKQAQTYDPEGEYVAYWL 498 Query: 430 PELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKA---CHHTLNQYYAAKKQS 481 P+L +P + + P Y IV K H ++ AA+K + Sbjct: 499 PQLQELPKEKRNFP---------GKLYMEQIVPLKFGNPNGHRGQDRASAARKTN 544 >gi|224003307|ref|XP_002291325.1| Cryptochrome/Photolyase family 3 [Thalassiosira pseudonana CCMP1335] gi|220973101|gb|EED91432.1| Cryptochrome/Photolyase family 3 [Thalassiosira pseudonana CCMP1335] Length = 571 Score = 296 bits (757), Expect = 7e-78, Method: Composition-based stats. Identities = 120/527 (22%), Positives = 209/527 (39%), Gaps = 80/527 (15%) Query: 1 MKATTAM-SVHLVWLRN-DLRITDNKALYA------------ACHNSDAKVIAVFIATP- 45 M ++ +++ R DLR+ DN AL A + ++ VF+ Sbjct: 1 MASSATQYKLNIHLFRQTDLRLHDNPALCHTVDLSLGTSSSDAASTAPTGILPVFVFDTT 60 Query: 46 ---------EQWRQHGISARQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDS 96 R++ F ++ ++ +L ++G S + + + + Sbjct: 61 RIYGSNAKSRLGNNLKCGPRRARFAIEAVADLRSNLEKRGSGLVVAVGSP-ESILARIAT 119 Query: 97 YCLQQRVTK-----LFYNRQYEINEVRRDKLLEKRLQH------RVICKSFDDSVLLPPG 145 ++ K + + E+ DK + L + ++ S + P Sbjct: 120 AAVESSGDKGALINVVCQEEVCSEELSVDKAIRSSLAKTMKSTSKFTFETVWGSTMYDPE 179 Query: 146 SILNHAL--QMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQA 203 ++ + +++PFRK D+ + + +P D + A Sbjct: 180 TLPFDGGVFGVPDIFSPFRK---------DVEAKCQIVNDANNKCSLKYMPTLSDLGYNA 230 Query: 204 IDPM--------------FPIGEQNALHILRKFCKEKV--YYYVEQRD-IPAIQGTSQLS 246 D + GE AL ++ + +K Y + R+ + +++ + Sbjct: 231 EDIESVSSVDSRTALPVNYRGGETFALRRVKDYIWDKDLLKLYFDTRNGMIGSDYSTKFA 290 Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPS---VCM 303 P+L++G +SPR R + + ++ KS + + EL+ R+ ++ + Sbjct: 291 PWLALGNVSPRYIA-RECSRYEEQRVQNKS-TYWVVLELLIRDHFKFFAKKHGDKVFYLT 348 Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363 G + +W D +QAW+ G TGFP++DA MR+L G+M NR R ASFL Sbjct: 349 GNIGKQRGSERKWGMDRKKIQAWQDGMTGFPLVDANMRELAATGFMSNRGRQNVASFLTI 408 Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423 DL +DWR G EYF LLD D+ SN G W AA + FN Q K +D G Sbjct: 409 DLNIDWRYGGEYFEETLLDYDVHSNWGNWCSAAGMTGGRLNR---FNIVKQSKDYDFGGE 465 Query: 424 FIRHWLPELNNVPTQYIHAPHSWLD--------KNDLSLNYPLPIVD 462 ++R W PEL NVP ++IH+P K +YP PIVD Sbjct: 466 YVRLWCPELKNVPDKHIHSPWEMSGEMMEECGVKIGHGGDYPSPIVD 512 >gi|307107980|gb|EFN56221.1| hypothetical protein CHLNCDRAFT_51884 [Chlorella variabilis] Length = 1184 Score = 296 bits (757), Expect = 8e-78, Method: Composition-based stats. Identities = 125/516 (24%), Positives = 199/516 (38%), Gaps = 74/516 (14%) Query: 10 HLVWLR-NDLRITDNKALYAACHNSDA----KVIAVFIATPEQ-----WRQHGISARQSH 59 ++W R DLR+ DN ++ A +A +V+ +F P W ++ Sbjct: 17 AVIWFRGTDLRLHDNAIVHEAARRVEAGQVAEVLPLFCFDPRYFQASAWGSPKTGQFRAR 76 Query: 60 FIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRV---TKLFYNRQYEINE 116 F+ S+ ++ L G E L Q+ T + + E Sbjct: 77 FLLESVRDLKARLRALGSDLLI----CMGRPEEVLPGLMAQRGSGLQTCVLAQSEVTSEE 132 Query: 117 VRRDKLLEKRL-QHRVICKSFDDSVLLPPGSILNHAL--QMYKVYTPFRKALIQNLVQAD 173 + +K ++ + + S + + M V+TPF++ Sbjct: 133 LAIEKKVKSAVVAAGGKLDLYWGSTMYHLEDLPFREGLRDMPDVFTPFKQKCEDRCQVRK 192 Query: 174 LRSLPVP-------------------AIRLTGPVTPSNIPRFFDYPFQAIDPM-FPIGEQ 213 P P + V P P+ + F GE Sbjct: 193 PFPAPAPGALPLPAGLEAARLAFEPQRVEDLNAVVPEGHPQLASPQRDTRAVLDFEGGES 252 Query: 214 NALHILRKFCKEKV--YYYVEQRD-IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDL 270 AL LR + + Y + R+ + +++L+P+L+ G LSPR + +K Sbjct: 253 AALARLRYYLFDSNLVATYFDTRNGMLGGDYSTKLAPWLAHGCLSPRSVYYDIKRYERQT 312 Query: 271 LIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGY 330 KS + + ELIWR+FYR + S + + +W+ D+ L+ WK+G Sbjct: 313 GTANKS-TYWVVFELIWRDFYRFFALKHGSKIFLEGGTTG-QAPQWSNDAEALRRWKEGR 370 Query: 331 TGFPIIDAAMRQLNTIG--------------------WMHNRLRMITASFLVKDLLVDWR 370 TG+P++DA R+L G +M NR R ASFL DL VDWR Sbjct: 371 TGWPLVDANQRELRATGKSRPAGGRPMRIRALLLACGFMSNRGRQNVASFLALDLGVDWR 430 Query: 371 IGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLP 430 G ++F LLD D+ SN G W AA V FN T Q K +D +G +IR W+P Sbjct: 431 RGADWFEHLLLDYDVCSNWGNWVAAAGLTGGRVNK---FNITKQSKDYDSEGQYIRTWVP 487 Query: 431 ELNNVPTQYIHAPHSWLDKN------DLSLNYPLPI 460 EL VP + IH P + + ++YP P+ Sbjct: 488 ELACVPARRIHEPWLMSREEQAAAGVQIGVDYPAPL 523 >gi|89054364|ref|YP_509815.1| deoxyribodipyrimidine photo-lyase type I [Jannaschia sp. CCS1] gi|88863913|gb|ABD54790.1| deoxyribodipyrimidine photo-lyase family protein (cryptochrome) [Jannaschia sp. CCS1] Length = 517 Score = 295 bits (756), Expect = 8e-78, Method: Composition-based stats. Identities = 112/467 (23%), Positives = 175/467 (37%), Gaps = 28/467 (5%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M LV + DLR+ DN AL A D + VF+A PE W Q SARQ F+ SL Sbjct: 1 MKNVLVLFKRDLRVQDNPALALAASR-DGAALPVFVAEPEAWAQPDASARQWRFVAESLE 59 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYE-INEVRRDKLLEK 125 ++ L+ G + D + L C V ++ + + RD+ L Sbjct: 60 GLRADLAALGAPLIVRRG----DMMAVLGGLCATHDVGEIISIEETGNLWSYGRDRRLAA 115 Query: 126 RLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185 + + + + +Q V Q +++ +P ++ Sbjct: 116 WARGAGVIWT----------EVPQLGVQRRLVNRDGWARDRQAVMRQAQVPVPEGLRGVS 165 Query: 186 GPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIP--AIQGTS 243 R F G L L F + Y P S Sbjct: 166 EEPGSIPDARDLALAFDPCPGRQAGGRDGGLATLASFLTARGQEYRRAMSSPLDGAAACS 225 Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKS---GAFSWLNELIWREFYRHLMAFYPS 300 +LSP+L+ G LS R+ + + ++ S+ + WR+ + + P+ Sbjct: 226 RLSPHLAWGTLSSREVLHGMAARRAEVKGTRDGWLGSLRSFEARVAWRDHFMQKLEDQPA 285 Query: 301 VCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASF 360 + + + + D+ L AW++G TG P +DA MR L GW++ R+R + A+ Sbjct: 286 MEIRCLHSAYEDLRPNVPDATRLSAWEKGETGIPFVDACMRSLIATGWINFRMRAMLAAV 345 Query: 361 LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDP 420 L +DWR + D + + Q G + RI+NP QG DP Sbjct: 346 ASYHLWLDWRRTGPHLARMFTDYEPGIHWP--QMQMQAGTTGMNTIRIYNPVKQGLDHDP 403 Query: 421 QGTFIRHWLPELNNVPTQYIHAPHSWLD-----KNDLSLNYPLPIVD 462 GTF R W PEL VP + P +W + L YP PIVD Sbjct: 404 TGTFTRTWCPELREVPDACLQTPWAWAETGSPAARRLGRRYPAPIVD 450 >gi|228475792|ref|ZP_04060509.1| deoxyribodipyrimidine photolyase [Staphylococcus hominis SK119] gi|228270140|gb|EEK11592.1| deoxyribodipyrimidine photolyase [Staphylococcus hominis SK119] Length = 457 Score = 295 bits (756), Expect = 9e-78, Method: Composition-based stats. Identities = 139/477 (29%), Positives = 225/477 (47%), Gaps = 30/477 (6%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M++ ++ L RI +N DA I E + + G +++++ Y +L Sbjct: 1 MNIGVI-LNRVFRINNNPLFEYINQQKDAFDKCYLIIPKETFEEKGT-DKKANYYYGTLE 58 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRR--DKLLE 124 + L + H + L +C + + ++ R + L+ Sbjct: 59 KFLYKLKE-------HHIEPYVIDYSELGMFCTEHDIKEIVMAGDIMSYHQERYDIRHLK 111 Query: 125 KRLQ-HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIR 183 + + H + + + + P + +N Q YKV+T F KA L Q + I Sbjct: 112 QAFKNHDIPVITINVNHYFKPSNTMNQQGQPYKVFTSFYKAHRSKLRQHSPYQYQLSDIA 171 Query: 184 LTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS 243 + I + + Q+ E AL+ + + + Y + R+ TS Sbjct: 172 NKCSQSQQKITNDYHHDGQS--------EDQALNNWKDYLNHSIQNYKKDREYLPEILTS 223 Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCM 303 QLS L+ G++ +Q L E + + +S S++ E+++REFY LMA YP + Sbjct: 224 QLSIVLAYGLIDIKQIITDLLERYKE----NESNYESFIREVMFREFYYVLMAQYPHIA- 278 Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363 + F I+W+ + W +G TGFPIIDAAM +LN G+MHNR+RM+ + FL K Sbjct: 279 HEAFNEKYRTIQWSYNKEEFNRWCEGQTGFPIIDAAMNELNETGFMHNRMRMVVSQFLTK 338 Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423 DL +DW GE+YF +L+D D ASN GWQW+AS G D+VPYFR+FNP Q +RFD Sbjct: 339 DLFIDWAWGEDYFRKKLIDYDAASNIHGWQWSASIGTDAVPYFRMFNPIRQSERFDKDAL 398 Query: 424 FIRHWLPELNNVPTQYIHAPHSWLDK-----NDLSLNYPLPIVDHKKACHHTLNQYY 475 +I+ ++P ++VP + +H P + L +YP PIVDHK A H + + Sbjct: 399 YIKKYIPIFDHVPAKLLHHPFQHQTQLVKKGIQLGKDYPEPIVDHKVAREHVMTIFK 455 >gi|88706143|ref|ZP_01103850.1| deoxyribodipyrimidine photolyase [Congregibacter litoralis KT71] gi|88699537|gb|EAQ96649.1| deoxyribodipyrimidine photolyase [Congregibacter litoralis KT71] Length = 488 Score = 295 bits (755), Expect = 1e-77, Method: Composition-based stats. Identities = 113/486 (23%), Positives = 182/486 (37%), Gaps = 32/486 (6%) Query: 10 HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69 +VWL+ DLR+ D+ AL AA S V+ ++ PE + R F++ SL + Sbjct: 3 AVVWLKRDLRLQDHAALEAAL-GSGLPVVLLYCFEPELLKDPHYDERHWRFVWESLRDMH 61 Query: 70 KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEV-RRDKLLEKRLQ 128 + L + E ++++ ++ + + + RD+ L Q Sbjct: 62 RRLEAHPRSLRVLHGDPR----EIFRVLADEEQLHSVYSYEETGLEKTFARDRELAALFQ 117 Query: 129 HR-VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187 R + K F P + + + D R + Sbjct: 118 ERSIPWKEF------PSNGVQRGRKNRKGWNRKWTAQMSAPCHDVDHRLI----RGSFAC 167 Query: 188 VTPSNIPRFFDYPFQAIDP---MFPIGEQNALHILRKFCKEKVYYYVEQRDIP--AIQGT 242 D P P GE A L F + + Y P + Sbjct: 168 EERLAAFHLRDLPGSWRSPDNQFQSGGESEAWQTLNDFLERRSPAYARNISKPLASRSSC 227 Query: 243 SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVC 302 S+LSP+L+ G LS RQ + L+ + ++ + L W + Sbjct: 228 SRLSPFLAWGNLSIRQVYQALRAAQKERGS--SRALQAFESRLHWHCHFIQKFEMECR-M 284 Query: 303 MGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLV 362 + ++D L +AW +G TG+P+IDA+MR L G+++ R R + SFL Sbjct: 285 EHEDINRGYLHHPRSRDDALARAWAEGNTGYPLIDASMRCLAATGYINFRSRAMLVSFLT 344 Query: 363 KDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQG 422 L DWR+G + S LD + + Q G + RI+NP Q + DP G Sbjct: 345 HHLWQDWRVGAAHLASLFLDFEPGIHFAQLQMQ--AGVTGINTIRIYNPVKQSEEHDPDG 402 Query: 423 TFIRHWLPELNNVPTQYIHAPHSWLDKNDL-----SLNYPLPIVDHKKACHHTLNQYYAA 477 FIR W+PEL VPT IH P L S Y P+VD ++ ++ +A Sbjct: 403 AFIRQWVPELAEVPTPMIHRPWDLSPMEQLIYGLDSKPYAPPVVDVRETYRSARDRLWAL 462 Query: 478 KKQSLL 483 K ++ Sbjct: 463 KDDPVV 468 >gi|327342148|gb|AEA50861.1| cry1-2 [Populus tremula] Length = 576 Score = 295 bits (755), Expect = 1e-77, Method: Composition-based stats. Identities = 111/378 (29%), Positives = 175/378 (46%), Gaps = 19/378 (5%) Query: 117 VRRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRS 176 VR + E + +SF+ +L P + + + + + F + + Sbjct: 5 VRDHRAKEVLTAQGIAVRSFNADLLYEPWDVNDAQGRPFTTFATFWDRCLSMPFDPEAPL 64 Query: 177 LPVPAIRL-TGPVTPSNIPRFFDYPFQAIDPM----FPIGEQNALHILRKFCKEKVYYYV 231 LP I PS + F D + + + + G NA L F + Y Sbjct: 65 LPPKRIISGDASRCPSEMLVFEDESEKGSNALLARAWSPGWSNADRALTTFINGPLIEYS 124 Query: 232 EQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFS----WLNELIW 287 + R TS LSP+L G +S R+ ++ ++ + V + +L + Sbjct: 125 KNRRKADSATTSFLSPHLHFGEVSVRKVFHLVRIKQVLWANEGNKAGEESVNLFLKSIGL 184 Query: 288 REFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIG 347 RE+ R+L +P +P + + W D +AW+QG TG+P++DA MR+L G Sbjct: 185 REYSRYLSFNHP-YSHERPLLGHLKFFPWVVDEGYFKAWRQGRTGYPLVDAGMRELWATG 243 Query: 348 WMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFR 407 W+H+R+R++ ASF VK L + WR G +YF LLD DL S+ GWQ+ T D + R Sbjct: 244 WLHDRIRVVVASFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYITGTLPDGREFDR 303 Query: 408 IFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKN------DLSLNYPLPIV 461 I NP +G +FDP G ++R WLPEL +PT +IH P + + +L NYPLPIV Sbjct: 304 IDNPQFEGYKFDPNGEYVRRWLPELARLPTDWIHHPWNAPESVLQAAGIELGSNYPLPIV 363 Query: 462 --DHKKAC-HHTLNQYYA 476 D K L++ + Sbjct: 364 GIDAAKVRLEEALSEMWQ 381 >gi|75320690|sp|Q5IFN2|CRYD_OSTTA RecName: Full=Cryptochrome DASH, chloroplastic/mitochondrial; Flags: Precursor gi|51948350|gb|AAU14279.1| CRY DASH-like protein [Ostreococcus tauri] Length = 546 Score = 295 bits (755), Expect = 1e-77, Method: Composition-based stats. Identities = 128/498 (25%), Positives = 209/498 (41%), Gaps = 58/498 (11%) Query: 8 SVHLVWLRNDLRITDNK----ALYAACHNSDAKVIAVFIATPEQWRQHG-----ISARQS 58 + ++W RNDLR+ DN A A +SD +V+ V++ ++ A + Sbjct: 4 TRVVIWFRNDLRLLDNACVARAATLASESSDVEVVPVYVFDETYFKPSKRGLARFGAGRG 63 Query: 59 HFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVR 118 F + ++ SL G + D E + T + + E Sbjct: 64 KFTLECVGDLKTSLRALGSDLLVRCGKSRDVIAEL--TLTGANDRTIILTQTEVTSEETE 121 Query: 119 RDKLLEKRLQHRV-------ICKSFDDSVLLP----PGSILNHALQMYKVYTPFRKALIQ 167 D +E+ + R + S L P + + + V+TPFR + Sbjct: 122 MDVAVERATRERARGGAASATMERHWGSTLYHIDDVPFDVTSGLSDLPDVFTPFRNKVES 181 Query: 168 NLVQADLRSLPVPAIRLTGPVTPS-----NIPRFFDYPFQAIDPM--------------- 207 D+ +P P G V S +P+ D PF + + Sbjct: 182 KCKVRDV--IPAPTANELGHVPASVEGFEWMPKPSDLPFASSEIAMDCDKRIKDCLDERS 239 Query: 208 ---FPIGEQNALHILRKFCKE--KVYYYVEQRD-IPAIQGTSQLSPYLSIGVLSPRQCWN 261 F GE NAL ++ + E ++ Y E R+ + +++L+P+L++G +SPR + Sbjct: 240 VLDFKGGESNALARVKYYLWESDRLATYFETRNGMLGGDYSTKLAPWLALGCVSPRHVVS 299 Query: 262 RLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSH 321 ++ + + + + ELIWR+F++ + + W +D Sbjct: 300 EIRRYESERV--ENKSTYWVIFELIWRDFFKFFALKHGNKIFHLDGTAGRRA-SWKRDEK 356 Query: 322 LLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLL 381 +L+AWK G TG+P+IDA MR+L G+M NR R AS+L D +DWR G ++F LL Sbjct: 357 ILKAWKTGTTGYPLIDANMRELAATGFMSNRGRQNVASWLALDAGIDWRHGADWFEHHLL 416 Query: 382 DGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIH 441 D D ASN G W AA + FN Q K +DP G +I+ W+ EL VP YI Sbjct: 417 DYDTASNWGNWCAAAGMTGGRINR---FNIAKQTKDYDPAGEYIKTWVKELAEVPAAYIA 473 Query: 442 APHSWLD--KNDLSLNYP 457 P+ ++ + LNYP Sbjct: 474 DPNQAPRELRDRIGLNYP 491 >gi|314937003|ref|ZP_07844350.1| putative deoxyribodipyrimidine photolyase [Staphylococcus hominis subsp. hominis C80] gi|313655622|gb|EFS19367.1| putative deoxyribodipyrimidine photolyase [Staphylococcus hominis subsp. hominis C80] Length = 457 Score = 295 bits (755), Expect = 1e-77, Method: Composition-based stats. Identities = 139/477 (29%), Positives = 225/477 (47%), Gaps = 30/477 (6%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M++ ++ L RI +N DA I E + + G +++++ Y +L Sbjct: 1 MNIGVI-LNRVFRINNNPLFEYINQQKDAFDKCYLIIPKETFEEKGT-DKKANYYYGTLE 58 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRR--DKLLE 124 + L + H + L +C + + ++ R + L+ Sbjct: 59 KFLYKLKE-------HHIEPYVIDYSELGMFCTEHDIKEIVMAGDIMSYHQERYDIRHLK 111 Query: 125 KRLQ-HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIR 183 + + H + + + + P + +N Q YKV+T F KA L Q + I Sbjct: 112 QAFKNHDIPVITINVNHYFKPSNTMNQQGQPYKVFTSFYKAHRSKLRQHSPYQYQLSDIA 171 Query: 184 LTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS 243 + I + + Q+ E AL+ + + + Y + R+ TS Sbjct: 172 NKCSQSQQTITNDYHHDGQS--------EDQALNNWKDYLNHSIQNYKKDREYLPEILTS 223 Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCM 303 QLS L+ G++ +Q L E + + +S S++ E+++REFY LMA YP + Sbjct: 224 QLSIVLAYGLIDIKQIITDLLERYEE----NESNYESFIREVMFREFYYVLMAQYPHIA- 278 Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363 + F I+W+ + W +G TGFPIIDAAM +LN G+MHNR+RM+ + FL K Sbjct: 279 HEAFNEKYRTIQWSYNKEEFNRWCEGQTGFPIIDAAMNELNETGFMHNRMRMVVSQFLTK 338 Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423 DL +DW GE+YF +L+D D ASN GWQW+AS G D+VPYFR+FNP Q +RFD Sbjct: 339 DLFIDWAWGEDYFRKKLIDYDAASNIHGWQWSASIGTDAVPYFRMFNPIRQSERFDKDAL 398 Query: 424 FIRHWLPELNNVPTQYIHAPHSWLDK-----NDLSLNYPLPIVDHKKACHHTLNQYY 475 +I+ ++P ++VP + +H P + L +YP PIVDHK A H + + Sbjct: 399 YIKKYIPIFDHVPAKLLHHPFQHQTQLVKKGIQLGKDYPEPIVDHKVAREHVMTIFK 455 >gi|195497880|ref|XP_002096288.1| GE25590 [Drosophila yakuba] gi|194182389|gb|EDW96000.1| GE25590 [Drosophila yakuba] Length = 542 Score = 295 bits (755), Expect = 1e-77, Method: Composition-based stats. Identities = 114/515 (22%), Positives = 200/515 (38%), Gaps = 50/515 (9%) Query: 10 HLVWLRNDLRITDNKALYAACHNSDA--KVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67 +++W R+ LR+ DN AL AA + D +I VFI E + + F+ SL Sbjct: 7 NVIWFRHGLRLHDNPALLAALADKDQGIALIPVFIFDGESAGTKNVGYNRMRFLLDSLQD 66 Query: 68 VQKSLSQ----KGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLL 123 + L +G + + + Q R+ ++ + E RD+ + Sbjct: 67 IDDQLQAATDGRGRLLVFE-----GEPANIFRRLHEQVRLHRICIEQDCEPIWNDRDESI 121 Query: 124 EKRLQH-RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAI 182 + + L P ++ + + +Q + + Sbjct: 122 RFLCRELNIDFVEKVSHTLWDPQLVIETNGGIPPLTYQMFLHTVQIIGLPPRPTADARLE 181 Query: 183 RLTGPVTPSNIPRFFDYPFQAIDPM----------------FPIGEQNALHILRKFCKEK 226 T S R + + P + GE AL +L + K + Sbjct: 182 DATFVELDSEFCRSLNLFEKLPAPDHFNVYTDNMGFLAKINWRGGETQALLLLDERLKVE 241 Query: 227 VYYYVEQRDIPAI------QGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPK----- 275 + + +P +S +L G LS R+ + + + F ++ ++ Sbjct: 242 QHAFERGFYLPNQALPNIHDSPKSMSAHLRFGCLSVRRFYWSVHDLFKNVQLRACVRGVQ 301 Query: 276 -SGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNK-DSHLLQAWKQGYTGF 333 +G +LIWRE++ + P+ + I W K LLQ W+ G TGF Sbjct: 302 MTGGAHLTGQLIWREYFYTMSVNNPNYDRMEG-NEICLSIPWAKPKEDLLQRWRLGQTGF 360 Query: 334 PIIDAAMRQLNTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGW 392 P+ID AMRQL GW+H+ LR A+FL + L W G ++F+ LLD D + G W Sbjct: 361 PLIDGAMRQLLAEGWLHHTLRNTVATFLTRGGLWQSWEHGLQHFLKYLLDADWSVCAGNW 420 Query: 393 QWAASTGNDSVPYFR-IFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND 451 W +S+ + + + P KR DP+GT+I+ ++PEL NVP +++H P + Sbjct: 421 MWVSSSAFERLLDSSLVTCPVALAKRLDPEGTYIKQYVPELINVPREFVHEPWRMSVEQQ 480 Query: 452 ------LSLNYPLPIVDHKKACHHTLNQYYAAKKQ 480 + ++YP I+D A + + Sbjct: 481 EQYECLIGVHYPERIIDLSMAVKRNMLAMKTLRNS 515 >gi|86134108|ref|ZP_01052690.1| DNA photolyase/cryptochrome, animal cryptochrome and (6-4) photolyase subfamily [Polaribacter sp. MED152] gi|85820971|gb|EAQ42118.1| DNA photolyase/cryptochrome, animal cryptochrome and (6-4) photolyase subfamily [Polaribacter sp. MED152] Length = 496 Score = 295 bits (754), Expect = 1e-77, Method: Composition-based stats. Identities = 103/481 (21%), Positives = 201/481 (41%), Gaps = 27/481 (5%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 +++VW + DLR+ DN+A+ A + V+ +++ + R +FI S+ ++ Sbjct: 8 INVVWFKRDLRLQDNEAIQNAL-LTKKPVLFLYVFENSLLEDPHYNIRHWNFIKESIQEL 66 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVR-RDKLLEKRL 127 L+ F + + I + ++ +F +++ + + RDK + Sbjct: 67 NDDLTA----FNTKILTVTSEVITVFNQLQNFYKIDTVFSHQETGLLKTYNRDKDFARYC 122 Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187 ++ I +++ +L L + + + + ++ D ++ + + Sbjct: 123 RNNSINWVENNN-----NGVLRGLLNRHDWLEKWENFMYKPQIKNDFKNRNLISEDEITT 177 Query: 188 VTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAI--QGTSQL 245 + I + P +A G + F +E+ Y+ PA+ + S+L Sbjct: 178 IENHFIVTDLETPKEA--KFQKGGSKMGWRYANSFFEERYKNYMNHISKPALSRKSCSRL 235 Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305 SPY++ G LS RQ + + D + K ++++ L W+ + Sbjct: 236 SPYIAWGNLSIRQVYQKAIMLKND---ENKRQLGAFVSRLRWQAHFIQKFE-MEHTMEEA 291 Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365 K++ N + +AW++G TGFPIIDA+MR L+ G+++ R+R + ASF L Sbjct: 292 SINKGYHKLKKNISTKYQKAWREGKTGFPIIDASMRCLSETGYLNFRMRSMLASFFTHIL 351 Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425 W+ + LD + + Q +G + R++NP D FI Sbjct: 352 WQPWQDSSHHLSQLFLDFEPGIHFP--QLNMQSGETGINEIRVYNPIKNSLEHDEDANFI 409 Query: 426 RHWLPELNNVPTQYIHAPHSWLDKND------LSLNYPLPIVDHKKACHHTLNQYYAAKK 479 + W+PEL N+PT +IH P+ ++ L ++YP PIVD K A + KK Sbjct: 410 KEWVPELANLPTAFIHQPYLMTPLDEQFNNFKLGVDYPKPIVDFKSARKRATQTLWDMKK 469 Query: 480 Q 480 Sbjct: 470 D 470 >gi|242372923|ref|ZP_04818497.1| deoxyribodipyrimidine photo-lyase [Staphylococcus epidermidis M23864:W1] gi|242349407|gb|EES41008.1| deoxyribodipyrimidine photo-lyase [Staphylococcus epidermidis M23864:W1] Length = 457 Score = 295 bits (754), Expect = 1e-77, Method: Composition-based stats. Identities = 140/479 (29%), Positives = 231/479 (48%), Gaps = 31/479 (6%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M V ++ L R+ +N L+ + + + P Q + + ++++ Y +L Sbjct: 1 MKVGVI-LNRVFRLENNP-LFEYISQNKEDIDQCYFIIP-QEKFDKEAEMKANYYYGTLQ 57 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 + +L I F + L +C + ++++ + +L++ Sbjct: 58 KFVDTLHDYDI-------QPFLVDYDELTHFCKDKGISEVVLAGDIMSYHEEKYDILQQS 110 Query: 127 L---QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIR 183 + S + P N+ + YKV+T F K L++ + S + I Sbjct: 111 ASFKNEGISVVSVRANHYFKPSKTRNNKGEPYKVFTSFYKKWRPYLMKRSVFSYDIKDIA 170 Query: 184 LTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS 243 G + + + + I E +A + F + + Y R+ TS Sbjct: 171 KMGVKSQQKVKGDY--------SQYGISEADAQYRWSDFLDKDIENYNTNREYLPEVLTS 222 Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCM 303 QLS YL+ GVL Q +N L E + K + S++ ELI+REFY LM +YP Sbjct: 223 QLSIYLAYGVLDIIQIFNDLLENY----DKDEQNYESFIRELIFREFYYVLMTYYPETA- 277 Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363 + F ++W+ + WK+G TGFPIIDAAM +LNT G+MHNR+RM+ + FL K Sbjct: 278 HQSFKDKYRDLQWSYNKENFNLWKEGKTGFPIIDAAMGELNTTGYMHNRMRMVVSQFLTK 337 Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423 DL +DW GEEYF +L+D D ASN GWQW+ASTG D+VPYFR+FNP Q +RFD Sbjct: 338 DLFIDWTWGEEYFRQKLIDYDSASNVHGWQWSASTGTDAVPYFRMFNPVRQSERFDKDAL 397 Query: 424 FIRHWLPELNNVPTQYIHAPHSWLDK-----NDLSLNYPLPIVDHKKACHHTLNQYYAA 477 +I+ ++ LN++ +Y+H H + + +L +YP IV+H ++ H ++++ A Sbjct: 398 YIKKFVQTLNDIDAKYLHDTHKYERQIKEQGIELGKDYPKQIVNHSESRTHVMSEFKAL 456 >gi|225010805|ref|ZP_03701273.1| Deoxyribodipyrimidine photo-lyase [Flavobacteria bacterium MS024-3C] gi|225005013|gb|EEG42967.1| Deoxyribodipyrimidine photo-lyase [Flavobacteria bacterium MS024-3C] Length = 491 Score = 295 bits (754), Expect = 2e-77, Method: Composition-based stats. Identities = 103/485 (21%), Positives = 186/485 (38%), Gaps = 26/485 (5%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 + +VW + DLR+ D++ L A + + KV+ ++ + S FI L ++ Sbjct: 1 MVVVWFKRDLRLEDHEPLTRAFASGE-KVLLLYSFESFWTQDPHYSDLHIDFIQEGLEEI 59 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVR-RDKLLEKRL 127 Q L + D E L ++ + L+ + + ++ RDK ++K Sbjct: 60 QLKLKEYDTKILILS----DYIPEILKKIHSKEPIKALYSHMEAGMDITYTRDKAVKKWC 115 Query: 128 -QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 Q+ + F + L K + + + Sbjct: 116 TQNSIHWHEFAQNGLW------RALKNRQKWRDHWISQMKAPIHIPSFLPTTYYTASEID 169 Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIP--AIQGTSQ 244 ++ + + + G N L F +++ Y + P + + + Sbjct: 170 GLSAALKLVPLELNITHKKGIQIGGSLNGWKYLHSFMTKRISGYQKYYSKPLESRLHSGR 229 Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304 +SPYL+ G+LS +Q + + K S+L+ L W+ + PS+ Sbjct: 230 ISPYLAWGMLSAKQVLQYVTRHQKQV--SNKRNINSFLSRLSWQAHFIQKFEMEPSIEFD 287 Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364 + AW+QG TG P++DAAMR L G+++ RLR + ASF Sbjct: 288 -AVNKGYAALNKTVIPAHQLAWRQGQTGVPMVDAAMRCLVQTGFVNFRLRAMLASFFTHL 346 Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424 L W+ + LD + + Q G + RI+NP G DP+G F Sbjct: 347 LWQPWQDCSPHLAQHFLDFEPGIHFPQLQMQ--AGETGINTIRIYNPVKNGLDHDPKGIF 404 Query: 425 IRHWLPELNNVPTQYIHAPHSWLDKND------LSLNYPLPIVDHKKACHHTLNQYYAAK 478 I+ W+PEL +P Y+H P L +YP PI+D +K+ + +Q + + Sbjct: 405 IKKWVPELALIPEVYVHEPWKMPPLEAAFLNFTLGNDYPAPIIDLEKSRKYAADQLWGLR 464 Query: 479 KQSLL 483 K +L+ Sbjct: 465 KTNLV 469 >gi|46124775|ref|XP_386941.1| hypothetical protein FG06765.1 [Gibberella zeae PH-1] Length = 685 Score = 295 bits (754), Expect = 2e-77, Method: Composition-based stats. Identities = 122/551 (22%), Positives = 200/551 (36%), Gaps = 85/551 (15%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 + W R DLR+ D+ AL AA + +F P + + F+ + K Sbjct: 59 IYWFRTDLRLHDSPALKAALDLDPSVFWPIFTWDPHYVYRARGGLNRWQFLLDCQNDLSK 118 Query: 71 SLSQ--KGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128 S+++ + + +VT + + + + RD ++ + + Sbjct: 119 SITKVNSNSKLFVLR----EAPQTLFPKLFKAWKVTHIVFEKDTDSYARERDSIVTQAAK 174 Query: 129 HRVICK-------SFDDSVLLPP-------------------GSILNHALQMYKVYTPFR 162 + +D ++ G + + P Sbjct: 175 DAGVEVIIRSGRTLWDSDQIVEKHGGKPTMSITQLQAAGSKLGQVKKPIPAPKNLPDPGD 234 Query: 163 KALIQNLVQADLRSLPVPAIR---------LTGPVTPSNIPRFFDYPFQAIDPMFPIGEQ 213 + + + D + IR ++GP I + F GE Sbjct: 235 MPVNFDQDEPDTKPDFNSEIRTEGDKTYTKISGPKGDFAIETMEELGFPPATTPHRGGET 294 Query: 214 NALHILRKFCKEKVYY--YVEQRDIPAI---QGTSQLSPYLSIGVLSPRQCWNRLKEEFV 268 AL L + +K Y + + + PA Q T+ LSP+L G LS R+ + R+K+ V Sbjct: 295 LALKALDEIIADKKYTATFQKPKTSPAQFEPQATTLLSPHLHFGSLSVREFYWRVKD-VV 353 Query: 269 DLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWN----KDSH--- 321 D S S + +L++R+ Y A V P+ I W+ +D Sbjct: 354 DSYKGASSPPESLIGQLLFRDMYFAAQAALGYVFSQTANNPYCRFIPWHLPSKRDPETGL 413 Query: 322 --------------LLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK-DLL 366 + WK G TGFP IDA MRQL GW+H+ R A FL + Sbjct: 414 VTGEYHVDSEEADIWFKRWKAGMTGFPWIDALMRQLKDEGWIHHLGRHAVACFLTRGGCY 473 Query: 367 VDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIR 426 +DW G E F L+D + A N G WQW S YFR ++P G+++D +G FIR Sbjct: 474 IDWERGCEVFEEWLIDHEPACNVGNWQW-LSCSAFFSQYFRCYSPVAFGQKWDKKGEFIR 532 Query: 427 HWLPELNNVPTQYIHAPHSWLDKNDLSLN---------------YPLPIVDHKKACHHTL 471 ++PEL N+ +YI+ P + YP P+ D K + Sbjct: 533 RYVPELKNMDAKYIYEPWKAPLTDQKKAGVRVKGDGLNNVEEGTYPKPMFDFAKRRDVCI 592 Query: 472 NQYYAAKKQSL 482 + A + L Sbjct: 593 SSMKVAYQVGL 603 >gi|89076746|ref|ZP_01163027.1| deoxyribodipyrimidine photolyase, putative [Photobacterium sp. SKA34] gi|89047602|gb|EAR53213.1| deoxyribodipyrimidine photolyase, putative [Photobacterium sp. SKA34] Length = 486 Score = 295 bits (754), Expect = 2e-77, Method: Composition-based stats. Identities = 121/487 (24%), Positives = 204/487 (41%), Gaps = 41/487 (8%) Query: 12 VWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQKS 71 VWL+ DLR+TD++AL A NS V+ ++I P S R FI+ SL + Sbjct: 2 VWLKRDLRLTDHQALSVAA-NSAFPVLLIYIMEPMLLSDPHYSERHWRFIWQSLEDMNHQ 60 Query: 72 LSQKGI-VFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEIN-EVRRDKLLEKRL-Q 128 L+ VF +H +++E LD + LF +++ + RD ++ + Sbjct: 61 LACVNSQVFIFH-----GNAVECLDQLMHHCPINALFSHQEIGLGCTFERDLNIKAWCDK 115 Query: 129 HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPV----PAIRL 184 ++ F G+++ A + + + + + +L + P Sbjct: 116 QQIQWHEFQQ------GAVIRGAKNRTNWDKQWNRVMREPVFSVNLDKVNWVSTYPEQLA 169 Query: 185 TGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIP--AIQGT 242 +P R + Q G AL L F + Y P + Sbjct: 170 DMLFSPPESWREREQGMQT------GGSTLALQTLDDFFSRRGKEYYRSISSPTASRTAC 223 Query: 243 SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSV- 301 S+LSPYL+ G +S RQ + ++ + D + A S + L W + P++ Sbjct: 224 SRLSPYLAWGNISLRQVYQQVLAHWNDKGFRRSLIALS--SRLHWHCHFIQKFESEPAIE 281 Query: 302 --CMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITAS 359 CM + + + +KD L+AWK+G TG P+IDA MR L G+++ R+R + S Sbjct: 282 YFCMNRTYDRLLAE-SCSKDDLKLKAWKEGNTGIPLIDACMRCLYHTGYINFRMRSMLVS 340 Query: 360 FLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFD 419 FL L +DWR G + LD + + Q G + RI+NPT Q + D Sbjct: 341 FLTHHLNIDWRDGVTHLAQLFLDFEPGIHYSQLQMQ--AGVTGINTIRIYNPTKQAQEHD 398 Query: 420 PQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDL--SLN----YPLPIVDHKKACHHTLNQ 473 P G FI W+PEL N+P + P + + + L+ Y PI+D K++ + Sbjct: 399 PDGEFIHKWVPELGNIPVPLLFEPWNLTELEVVMYQLDNNSCYLYPIIDLKRSAKEARQR 458 Query: 474 YYAAKKQ 480 + + + Sbjct: 459 LWGWRGR 465 >gi|85711300|ref|ZP_01042359.1| putative deoxyribodipyrimidine photolyase [Idiomarina baltica OS145] gi|85694801|gb|EAQ32740.1| putative deoxyribodipyrimidine photolyase [Idiomarina baltica OS145] Length = 483 Score = 294 bits (753), Expect = 2e-77, Method: Composition-based stats. Identities = 111/487 (22%), Positives = 188/487 (38%), Gaps = 35/487 (7%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M++++VW + DLR++D++ L AA ++ + F P R FI S+ Sbjct: 1 MAINVVWFKRDLRLSDHEPLKAAI-STGRPTLLWFNFEPWLVNDPHYDERHWRFIVESIR 59 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEI-NEVRRDKLLEK 125 + + L + D++E L + Q + L+ +++ + N RDK + Sbjct: 60 DINRKLKAYNTQIYV----TYGDTVEQLQIWHQQFSIESLYSHQEVGLLNTFDRDKQVAS 115 Query: 126 RLQHRVICKSFDDSVLLPP-GSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL 184 C+ + P G++ + + + + L DL + Sbjct: 116 W------CRQHHVNWFESPTGAVQRGLNSRQQWQKHWYETMKAPLATPDLARIQPVK--- 166 Query: 185 TGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIP--AIQGT 242 + F+ G A L F +++ Y P A Sbjct: 167 ---AVSVDYRTLPKSWFERRPSFQYGGPAAAWATLNSFLEQRGRAYHYSISQPIRAQHHC 223 Query: 243 SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVC 302 S+LSPYL+ G LS R+C+ ++ + K A +L+ L W + + Sbjct: 224 SRLSPYLAWGNLSLRECYQATVDKRRETGWKRPLNA--FLSRLHWHCHFIQKFES-ETAM 280 Query: 303 MGKPFIPWTEKIEWNKD---SHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITAS 359 P E + D L+AW+QG TG+P++DAAMR L G+++ R+R + S Sbjct: 281 QHAPLNRAYENYPYRSDTQVEQHLKAWQQGKTGYPMVDAAMRCLLQTGYINFRMRALLVS 340 Query: 360 FLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFD 419 FL L + W+ + + LD + + Q A R++NP Q D Sbjct: 341 FLCHYLHIHWQYATTHLAALFLDFEPGIHYPQIQMQAGII--GTNTIRMYNPEKQAIEKD 398 Query: 420 PQGTFIRHWLPELNNVPTQYIHAPHSWLDKN------DLSLNYPLPIVDHKKACHHTLNQ 473 P G +I W+PEL +P + HAP+ L +YP PIVD + Sbjct: 399 PTGAYIDQWVPELAELPLEIKHAPYRITPMEAQMYGFKLGEDYPSPIVDVDDYRPIARDT 458 Query: 474 YYAAKKQ 480 Y KK Sbjct: 459 LYRIKKS 465 >gi|254423250|ref|ZP_05036968.1| FAD binding domain of DNA photolyase protein [Synechococcus sp. PCC 7335] gi|196190739|gb|EDX85703.1| FAD binding domain of DNA photolyase protein [Synechococcus sp. PCC 7335] Length = 527 Score = 294 bits (753), Expect = 2e-77, Method: Composition-based stats. Identities = 110/479 (22%), Positives = 193/479 (40%), Gaps = 32/479 (6%) Query: 12 VWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQKS 71 +W + D R+ D++ L A V+ +++ P+ W S RQ F+ + + ++ Sbjct: 1 MWFKKDFRLFDHRCLTFAAQKG--PVLPLYVVEPDYWALEDTSYRQYLFLKGCVEETIEA 58 Query: 72 LSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEV-RRDKLLEKRLQHR 130 L + G D +E L +L+ +++ N +RDK + K Q Sbjct: 59 LEELGGSMAIASG----DVVEVLSRLQKTYGNIELWAHQETGNNWTFQRDKAVRKWCQQA 114 Query: 131 VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT- 189 + P + + K+ +L+ + SLP + Sbjct: 115 GVA-------FHEP--LQFGVWRGSKINRDHWAKQWDSLMAEPIASLPESISFVAHSEDR 165 Query: 190 PSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIP--AIQGTSQLSP 247 P I + P G AL +L F E+ Y P G S+LSP Sbjct: 166 TMPSPEVLGLKHDGITALQPPGRNAALQVLSSFLYERGERYRTDMSSPVTGESGCSRLSP 225 Query: 248 YLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSW-------LNELIWREFYRHLMAFYPS 300 YL+ G +S R+ + ++ ++ PK+ +W + L W + + P Sbjct: 226 YLAYGAISMRETYQATQKRIAEVAAMPKAERGTWAGSLSSFVGRLHWHCHFTQKLELEPE 285 Query: 301 VCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASF 360 + +T + + L+A+ +G TG+P +DA MR L GW++ R+R + SF Sbjct: 286 LEWLPMARAYTGIRDDGDHAIKLRAFAEGQTGYPFVDACMRYLRATGWINFRMRAMLMSF 345 Query: 361 LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDP 420 DL + W+ + D + + Q +G + RI++P QG D Sbjct: 346 ASYDLWLPWQKSGDVLARLFTDYEPGIHWPQSQMQ--SGVTGINAIRIYSPIKQGLDQDI 403 Query: 421 QGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479 +GTF R W+PEL +P + + P + L+YP PIV+HK+A ++ +A KK Sbjct: 404 EGTFTRQWVPELAALPDEILQTPWLL----EGELSYPPPIVEHKEAAALAKSRLWAIKK 458 >gi|194900020|ref|XP_001979555.1| GG23184 [Drosophila erecta] gi|190651258|gb|EDV48513.1| GG23184 [Drosophila erecta] Length = 542 Score = 294 bits (753), Expect = 2e-77, Method: Composition-based stats. Identities = 117/515 (22%), Positives = 200/515 (38%), Gaps = 50/515 (9%) Query: 10 HLVWLRNDLRITDNKALYAACHNSDAKV--IAVFIATPEQWRQHGISARQSHFIYASLLQ 67 +++W R+ LR+ DN AL AA + D V I VFI E + + F+ SL Sbjct: 7 NVIWFRHGLRLHDNPALLAALADKDQGVALIPVFIFDGESAGTKNVGYNRMRFLLDSLQD 66 Query: 68 VQKSLSQ----KGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLL 123 + L + +G + + F Q R+ +L + E RD+ + Sbjct: 67 IDDQLQEATDGRGRLLVFEGEPAF-----IFRRLHEQVRLHRLCIEQDCEPIWNHRDETI 121 Query: 124 EKRLQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAI 182 + I L P ++ + + +Q + + Sbjct: 122 RALCRELGIDFVEKVSHTLWDPQLVIETNGGIPPLTYQMFLHTVQIIGLPPRPTADARLE 181 Query: 183 RLTGPVTPSNIPRFFDYPFQAIDPM----------------FPIGEQNALHILRKFCKEK 226 T R + + P + GE+ AL +L + K + Sbjct: 182 DATFVELDPEFRRSINMFEKLPTPHHFNVYEDNMGFLAKIKWRGGEKQALLLLGERLKVE 241 Query: 227 VYYYVEQRDIPAI------QGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPK----- 275 + + +P +S +L G LS R+ + + + F ++ ++ Sbjct: 242 QHAFERGFYLPNQALPNIHDSPKSMSAHLRFGCLSVRRFYWSVHDLFKNVQLRACVRGVQ 301 Query: 276 -SGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNK-DSHLLQAWKQGYTGF 333 +G +LIWRE++ + P+ + I W K LLQ W+ G TGF Sbjct: 302 MTGGAHITGQLIWREYFYTMSVNNPNYDRMEG-NEICLSIPWAKPKEDLLQRWRLGQTGF 360 Query: 334 PIIDAAMRQLNTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGW 392 P+ID AMRQL GW+H+ LR A+FL + L W G ++F+ LLD D + G W Sbjct: 361 PLIDGAMRQLLAEGWLHHTLRNTVATFLTRGGLWQSWEHGLQHFLKYLLDADWSVCAGNW 420 Query: 393 QWAASTGNDSVPYFR-IFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND 451 W +S+ + + + P KR DP GT+I+ ++PEL VP +++H P + Sbjct: 421 MWVSSSAFERLLDSSLVTCPVALAKRLDPDGTYIKQYVPELVKVPKEFVHEPWRMSAEQQ 480 Query: 452 ------LSLNYPLPIVDHKKACHHTLNQYYAAKKQ 480 + ++YP I+D A + A + Sbjct: 481 EQYECLIGVHYPERIIDLTMAVQRNMLAMKALRNS 515 >gi|88802282|ref|ZP_01117809.1| putative deoxyribodipyrimidine photolyase [Polaribacter irgensii 23-P] gi|88781140|gb|EAR12318.1| putative deoxyribodipyrimidine photolyase [Polaribacter irgensii 23-P] Length = 496 Score = 294 bits (753), Expect = 2e-77, Method: Composition-based stats. Identities = 107/487 (21%), Positives = 195/487 (40%), Gaps = 27/487 (5%) Query: 4 TTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYA 63 T +H+VW + DLR+ DN+A+ A S+ +V+ +++ R FI Sbjct: 3 TNKEEIHVVWFKRDLRLQDNEAIQNALA-SNKRVLFLYVFENSLIEDPHYDTRHWDFIKQ 61 Query: 64 SLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVR-RDKL 122 S++ + L + Q + + DS+ +V +F +++ + RDK Sbjct: 62 SVVALNAELKKYDTKVLCVQTEVVNAFNQIFDSF----KVDTVFSHQETGLLITYNRDKE 117 Query: 123 LEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAI 182 + ++ + +++ +L L + + + ++ L + I Sbjct: 118 FTRYCRNNSVTWKENNN-----NGVLRGLLNRADWFDKWDDYMYDTQIKNTLNA--EKFI 170 Query: 183 RLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAI--Q 240 + G + A F + + Y+ PA+ Q Sbjct: 171 SIEEIEQIEAYFNTVALETPKHSYFQQGGTKMAWKYADTFFQTRHEKYMSNISKPALARQ 230 Query: 241 GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPS 300 S+LSPYL+ G +S RQ + + D + +++ L W+ + Sbjct: 231 SCSRLSPYLAWGNVSIRQIFQEATKRKTDANKRHLGA---FISRLRWQAHFIQKFE-MEH 286 Query: 301 VCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASF 360 +K++ + +AW+ G TGFP+IDA+MR L G+++ R+R + SF Sbjct: 287 TMENASINKGYQKLKKSISLEYQKAWETGTTGFPLIDASMRCLKETGYLNFRMRAMVVSF 346 Query: 361 LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDP 420 L W+ ++ LD + + Q + G + RI+NP D Sbjct: 347 FTHILWQPWQSSSQHLSKLFLDFEPGIHFSQLQM--NAGETGINTLRIYNPIKNSIEHDE 404 Query: 421 QGTFIRHWLPELNNVPTQYIHAPH--SWLDKN----DLSLNYPLPIVDHKKACHHTLNQY 474 GTFI+ W+PEL N+ +IH P+ + LD+ +L +NYP PIVD K A + Sbjct: 405 DGTFIKKWVPELANLSIAFIHEPYLMTPLDQQFNNFELGINYPHPIVDIKIARKKASDTL 464 Query: 475 YAAKKQS 481 + KK S Sbjct: 465 WEMKKNS 471 >gi|301121222|ref|XP_002908338.1| cryptochrome, putative [Phytophthora infestans T30-4] gi|262103369|gb|EEY61421.1| cryptochrome, putative [Phytophthora infestans T30-4] Length = 568 Score = 294 bits (752), Expect = 3e-77, Method: Composition-based stats. Identities = 133/539 (24%), Positives = 218/539 (40%), Gaps = 86/539 (15%) Query: 11 LVWLRNDLRITDNKALYAACHN-----SDAKVIAVFIATPEQWRQHGISARQSHFIYASL 65 L+W R DLR+ DN AL AA + SD ++I+++I + + A + F+ S+ Sbjct: 4 LLWFRRDLRLHDNLALNAALQHIEEAKSDVELISLYII--HRPQIMRCGANRFQFVLESV 61 Query: 66 LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD-KLLE 124 + +L+++G + DSI+ L +T +F++ E V RD + L Sbjct: 62 ADLSGALAERGSKLVVAKG----DSIQVLRRVLPAWDITHMFFDGVCEPYAVERDDRALA 117 Query: 125 KRLQHRVICKSFDDSVLLPPGSIL-NHALQMYKVYTPFRKALIQNLVQADLRSLPV---- 179 V L ++ +H+ + K Y F KA+ + P Sbjct: 118 LAKSLGVQTHVTKGYNLYDLEVVIASHSGKAPKTYQRFLKAVGAQPTPREPIPTPETLPS 177 Query: 180 --------------------------------PAIRLTGPVTPSNIPRFFD-----YPFQ 202 ++ P + D Y Sbjct: 178 PTRKHSELYEQIANYWKDRKLSDEEKEDDLEERERQIDQIAGPEHDFTLPDLTYFGYETP 237 Query: 203 AIDPMFPIGEQNALHILRKFC--KEKVYYYVEQRDIPAI----QGTSQLSPYLSIGVLSP 256 GEQ AL +L+ +C +++V + + + PA T+ LSPY+ G LSP Sbjct: 238 EKHSFIYGGEQKALEMLKNYCSDQDRVALFEKPKTSPAQIPPTPSTTVLSPYMFYGCLSP 297 Query: 257 RQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEW 316 R +++++ K S + +L+WR+FY P + ++ W Sbjct: 298 RTFYHQVRSIQRG-RKKVSVPPVSLIGQLLWRDFYHCHGRANPYFDKMEE-SSTCLQVNW 355 Query: 317 NK-----DSH-----------LLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASF 360 + +AW+ G TGFP IDA M QL GWMH+ R A F Sbjct: 356 RYHTIPENEEDLSDDDKLARSQFEAWRDGRTGFPWIDAIMIQLKEEGWMHHLARHSVACF 415 Query: 361 LVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFD 419 L + DL + W G E F +L+D D + N G W W +S+ + YFR+++P GK+ D Sbjct: 416 LTRGDLYISWVRGLEVFQERLIDHDWSLNAGNWLWLSSSYFFTA-YFRVYSPISFGKKSD 474 Query: 420 PQGTFIRHWLPELNNVPTQYIHAPHS------WLDKNDLSLNYPLPIVDHKKACHHTLN 472 P+G FI+ ++P L N P +YI+ P + +YP PI++HK A + Sbjct: 475 PEGLFIKKYIPALKNFPAKYIYEPWKAPLTLQHAAGCRIGKDYPTPIIEHKTAMKRCVE 533 >gi|103486487|ref|YP_616048.1| deoxyribodipyrimidine photolyase [Sphingopyxis alaskensis RB2256] gi|98976564|gb|ABF52715.1| Deoxyribodipyrimidine photo-lyase type I [Sphingopyxis alaskensis RB2256] Length = 457 Score = 294 bits (752), Expect = 3e-77, Method: Composition-based stats. Identities = 140/468 (29%), Positives = 217/468 (46%), Gaps = 36/468 (7%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M+ L+WLR DLR+ D+ + VI VFI E I A Q +++ SL Sbjct: 1 MTASLLWLRQDLRVHDHP--ALLAAIAGGAVIPVFILDDETPGTWKIGAAQRWWLHHSLT 58 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 + SL ++G + + + L + ++ YE K E+R Sbjct: 59 ALGASLKKRGSKLILRRGA----AHTELARIARETGSRRIHATHAYEPW----WKHSEER 110 Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 L + D + L P SI+N Y+V+TP+ + L+ + + Sbjct: 111 LPTDIALVLHDGNYLAAPDSIVNGQGARYRVFTPWYRRLLDH---MPPTLPQAAPDAVPA 167 Query: 187 PVTPSNIPRFFDYPFQAIDP-------MFPIGEQNALHILRKFCKEKVYYYVEQRDIPAI 239 P + D+ P + GE+ A R + + + Y +RD PA Sbjct: 168 PASWPRSDDLADWDLLPTRPNWAAGFGAWCPGEKGAWRAARDWL-DAIGDYKARRDYPAQ 226 Query: 240 QGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYP 299 TS+LSP+L G +SPR W+ + E + +GA S+ +EL WRE +L+ P Sbjct: 227 PATSRLSPHLHFGEISPRALWHAIGE-------RDDAGAESYRSELGWREHGINLVDQMP 279 Query: 300 SVCMGKPFIPWTEKIEWNKDSHL---LQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMI 356 + ++ W + AW +G TG+P++DA MR+L GWMHNR+RM+ Sbjct: 280 DYA-DRNGRELFDRFAWRTGADADRDFAAWTRGRTGYPVVDAGMRELWQTGWMHNRVRMV 338 Query: 357 TASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGK 416 TASFLVK LL+DWR GE +F LLD DL SN WQ+ A TG D+ + RI +P +Q + Sbjct: 339 TASFLVKHLLIDWRRGERWFWDTLLDADLGSNAMNWQYVAGTGVDAPVFSRIMSPLLQCE 398 Query: 417 RFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHK 464 RF ++R +PEL ++ I A H ++ + YP P++ H+ Sbjct: 399 RF-AMADYVRAHVPELAHLSDAEIAASHG---RDSGAPGYPEPLIGHE 442 >gi|284035533|ref|YP_003385463.1| deoxyribodipyrimidine photo-lyase [Spirosoma linguale DSM 74] gi|283814826|gb|ADB36664.1| Deoxyribodipyrimidine photo-lyase [Spirosoma linguale DSM 74] Length = 561 Score = 294 bits (752), Expect = 3e-77, Method: Composition-based stats. Identities = 106/498 (21%), Positives = 189/498 (37%), Gaps = 53/498 (10%) Query: 8 SVHLVWLRNDLRITDNKALYAACHNSD----AKVIAVFIATPEQWRQHGISARQSHFIYA 63 +++++W + DLR+ D+ L AA ++ ++ P R F+Y Sbjct: 15 TINILWFKRDLRLRDHAPLQAAIAMGQRAPKRPLLLLYCFEPSLIADPNYDLRHWRFVYE 74 Query: 64 SLLQVQKSLS--------QKGIVFQYHQCSNFDDSI--------------------EWLD 95 L ++K L+ G + FDD + L Sbjct: 75 CLADLRKQLATVPPPAPSDTGRLVHEWLPFEFDDQADDHQPETGLPTVWVFHREVTDVLT 134 Query: 96 SYCLQQRVTKLFYNRQYEINEVR-RDKLLEKRLQHRVI-CKSFDDSVLLPPGSILNHALQ 153 + Q + +F ++ + RDK + + + + I + F ++ + L+ Sbjct: 135 ALQTQFTIGSIFSYQETGLAVTYDRDKAVAQFCRQQGIGWQEFQNNGVF-------RRLK 187 Query: 154 MYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQ 213 + + +Q Q + PA P + P GE Sbjct: 188 NRDTWAAQWQQTMQQPQQHPDLTAWYPADVPPDWFEAERGPDLPAAWQRPNPSFQPGGEY 247 Query: 214 NALHILRKFCKEKVYYYVEQRDIP--AIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLL 271 N L F +E++ Y P + +G S+LSPYL+ G LS RQ + ++ Sbjct: 248 NGHRYLASFLQERIALYAASISKPLASRRGCSRLSPYLAWGCLSIRQVYQAQQQAAKKPQ 307 Query: 272 IKP-KSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGY 330 + + ++ + L W + + + + N + AW+ G Sbjct: 308 LAGLRRQLAAFASRLRWHCHFIQKFEREERMEFENVNRA-FDAVPKNVNPDHYAAWRDGR 366 Query: 331 TGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNG 390 TG+P++DA MR L G+++ R+R + SFL L W+ G + D + + Sbjct: 367 TGYPLVDACMRCLAATGYINFRMRAMLTSFLTHHLFQHWQEGGWHLARLYTDFEPGIHYA 426 Query: 391 GWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSW---- 446 Q + RI+NP Q + DPQG FI+ W+PEL N PT YIH P + Sbjct: 427 QLQMQSGMT--GTNTIRIYNPVKQSQEHDPQGVFIKQWVPELANCPTAYIHQPWTMPPLE 484 Query: 447 --LDKNDLSLNYPLPIVD 462 ++ + ++YP PI+D Sbjct: 485 QAMEHFQIGIDYPAPIID 502 >gi|205372682|ref|ZP_03225493.1| deoxyribodipyrimidine photolyase [Bacillus coahuilensis m4-4] Length = 482 Score = 293 bits (751), Expect = 4e-77, Method: Composition-based stats. Identities = 110/480 (22%), Positives = 192/480 (40%), Gaps = 22/480 (4%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 +++VWL+ D+R+ D++ LY A + V V++ P W+ +S R HFI SL ++ Sbjct: 1 MNIVWLKRDIRLQDHRPLYEASLRGETLV--VYVVEPSIWKDEPLSMRHLHFILESLEEM 58 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEV-RRDKLLEKRL 127 Q S + G + I+ L Q +L+ +++Y + R+K+++ + Sbjct: 59 QNSFNSIGGKLAVFHG----EMIDALSLLYTQYGPFRLWSHKEYGPKALLERNKIVKDWM 114 Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187 + + + + ++ K + + + V + P + Sbjct: 115 EKNGLHWTEYQAT------AISQKSSSIKQFKKEWQVFMDEPVLPKPIRIQAPDKLPSSF 168 Query: 188 VTPSNIPRFFDYPFQAIDPMF--PIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS-- 243 + + + F GE A L+ F E+ +Y + P S Sbjct: 169 IKDLAGYKKKSQGIKGEPIRFGQQGGELLAWDTLQTFLDERFVHYETNQMNPLASSISGS 228 Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCM 303 +LSPYL+ G +S R + + +L+ ++ R+F + P++ Sbjct: 229 RLSPYLAFGNISSRDVYQTVLSSKQKGESHSLEQLDLFLSRILRRDFLHQRLIENPTL-H 287 Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363 P + + N S QG TG PI+DA +R L GW++ R + F+ + Sbjct: 288 QYSLHPLFDGVRLNLSSKEYNRILQGETGIPIVDAGVRSLKLTGWLNESTRKMIVMFMCQ 347 Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423 + W+ S LD D + QW A T P R+ NP GK DP G Sbjct: 348 TMRQSWQKVAFDLGSLFLDYDPGIHYSEIQWQAGTWGSKPP--RVVNPIKIGKEQDPNGE 405 Query: 424 FIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQSLL 483 F++ ++ EL VP +YIH P + SL YP PIVD K + ++ K L Sbjct: 406 FVKRYVQELKTVPVEYIHEPWKY--PGVFSLQYPAPIVDVVKVNKESRRKFKEIKAAQTL 463 >gi|313242055|emb|CBY34235.1| unnamed protein product [Oikopleura dioica] Length = 539 Score = 293 bits (750), Expect = 4e-77, Method: Composition-based stats. Identities = 132/497 (26%), Positives = 219/497 (44%), Gaps = 41/497 (8%) Query: 4 TTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQH---GISARQSHF 60 + + L R DLR+ DN +L A + +++ VF+ PEQ S F Sbjct: 51 DDGVKIALFIFRRDLRLIDNTSLIQAIKDG-YRILPVFVFPPEQIDPEKNEWFSHPSVQF 109 Query: 61 IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120 + SL + + L ++ ++E + + + YN Y + RD Sbjct: 110 MCESLNDLGRQLKEE---VDGKLHLFMGGNLETIKKIKEVVNFSAIAYNEDYSVYARERD 166 Query: 121 KLLEKRLQ-HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPV 179 +E+ + + V +D LLP + A K P ++ + + + Sbjct: 167 GEIEEWAESNNVEIIKEEDYGLLP----IKDAWHHPKDGPPKPYRVLSIFFKHIQKFYDI 222 Query: 180 PAIRLTGPVTPSNIPRF---FDYPFQAIDPMF--------PIGEQNALHILRKFCKEKVY 228 S + F + ++ ++ G L L K + Sbjct: 223 RKPESNFEFEASQFTQSKFSFKFSISKLNTLYNANEKLAERGGRLVGLIGLEKI--KNKK 280 Query: 229 YYVEQRDIPAIQ-GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIW 287 Y E R+ ++ GT+++S +L G +S R+ + R E F + + +L++ Sbjct: 281 DYNETRNFMHLKAGTTKMSAHLKFGTVSIREMYWRTAELFGE--------THDLIRQLVF 332 Query: 288 REFYRHLMAFYPSVCMGKPFIPWTE-KIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTI 346 R+FY + + P + G + +I W+ D L AW +G TGFP++DAA RQL I Sbjct: 333 RDFYLKIYSHNPELQRGTALQAGVDERIPWSDDEKLWTAWCEGMTGFPLVDAAQRQLKEI 392 Query: 347 GWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYF 406 GW HNR+RM+T L K ++DWR G ++F L+D D+ +N GW W +STG D+VPYF Sbjct: 393 GWQHNRMRMLTGCVLTKYFMIDWRKGMKFFYQNLVDADVFNNTAGWGWVSSTGPDAVPYF 452 Query: 407 R-IFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLN-----YPLPI 460 R FNP IQ K+FD +G +I+ ++PEL +V +H + N YP P+ Sbjct: 453 RPPFNPWIQSKKFDLEGKYIKQYIPELADVSPADLHKWGDASIRAKYKKNKKVQAYPAPV 512 Query: 461 VDHKKACHHTLNQYYAA 477 V H +A + + Y A Sbjct: 513 VKHDEASKNAVYLYKKA 529 >gi|120437052|ref|YP_862738.1| cryptochrome-like DNA photolyase family protein [Gramella forsetii KT0803] gi|117579202|emb|CAL67671.1| cryptochrome-like DNA photolyase family protein [Gramella forsetii KT0803] Length = 438 Score = 293 bits (750), Expect = 5e-77, Method: Composition-based stats. Identities = 128/444 (28%), Positives = 207/444 (46%), Gaps = 27/444 (6%) Query: 1 MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATP-----EQWRQHGISA 55 M + LVW RNDLRI+D++AL AC NS K+I ++ P +Q+ Sbjct: 5 MPKKQTTNTGLVWFRNDLRISDHEALTTAC-NSHEKIIGIYCFDPRHYLKDQFGFIKTGK 63 Query: 56 RQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEIN 115 +S F+ ++ ++QK+L I Q D E + + V +++ +++ Sbjct: 64 FRSKFLIETIEELQKNLETLNIELLVFQEKPEDIIPEIIS----EYSVKSVYFQKEWTQE 119 Query: 116 EVRRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHA-LQMYKVYTPFRKALIQNLVQADL 174 E +K + RL + + S+ L P I + + KVYT FRK+ + +L Sbjct: 120 EHDVEKEVR-RLVNDIEFNSYYQQFLFHPEDIPFSSFNDIPKVYTEFRKSCEKYSKVREL 178 Query: 175 RSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPM------FPIGEQNALHILRKFCKEKVY 228 +LP P P + IP F D + F GE A ++++ E Sbjct: 179 VNLPSPLPARNLP-EKAKIPSFKDLGHDDYEKDKRSAFPFKGGEDQAKKRIQEYFWESKN 237 Query: 229 --YYVEQRD-IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNEL 285 Y E R+ + +S+LS +L+ G +S RQ ++ +K+ + I + + EL Sbjct: 238 LTRYKETRNEMIGANYSSKLSAWLANGSISARQVYHEVKK--FEKEITSNLSTYWLIFEL 295 Query: 286 IWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNT 345 IWR+F++++ + + I +EWN D L+ W G T + ++A MR+++ Sbjct: 296 IWRDFFKYISLKHANKIFKLGGI-QNRSLEWNYDKQSLKDWIHGNTKYDFVNANMREISN 354 Query: 346 IGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPY 405 G+M NR R SF K+L DWRIG YF S L+D D+ SN G W + + GND P Sbjct: 355 TGFMSNRGRQNVNSFWAKELKQDWRIGAAYFESLLIDYDVHSNWGNWMYNSGVGND--PR 412 Query: 406 FRIFNPTIQGKRFDPQGTFIRHWL 429 R FN Q +R+DP + WL Sbjct: 413 DRKFNIKNQAERYDPNNEYQDLWL 436 >gi|163754253|ref|ZP_02161376.1| deoxyribodipyrimidine photolyase (photoreactivation) [Kordia algicida OT-1] gi|161326467|gb|EDP97793.1| deoxyribodipyrimidine photolyase (photoreactivation) [Kordia algicida OT-1] Length = 432 Score = 293 bits (749), Expect = 6e-77, Method: Composition-based stats. Identities = 121/436 (27%), Positives = 200/436 (45%), Gaps = 25/436 (5%) Query: 8 SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGIS-----ARQSHFIY 62 LVW RNDLRI D +L A ++ V+AV+ P + + ++ F+ Sbjct: 3 KTGLVWFRNDLRIHDQVSLVKAAKE-NSFVMAVYCFDPRHFEKDRFGFVKTGKYRAQFLI 61 Query: 63 ASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKL 122 ++ +Q L++ I H F+ + + Y +VT ++ +++ EV Sbjct: 62 ETVSDLQNQLNELNIPLFVH----FEKPEKVVSEYVKIHKVTSVYSQKEWTSEEVAVSSA 117 Query: 123 LEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAI 182 ++K L + V D L P I ++ +V+T FRK + +L ++ Sbjct: 118 VKKALSNEVNWVESYDQFLFHPEDIPMTIDKIPQVFTVFRKKCEKYAQIRELETISKMPE 177 Query: 183 RLTGPVTPSNIPRFFDYPFQAIDPM------FPIGEQNALHILRKFCKE--KVYYYVEQR 234 + + +P D A + F GE AL L+ + K+ YY + R Sbjct: 178 K-NRVTHLTKVPTLHDLGLPAFEQDTRTAFPFKGGETAALQRLQDYAWNTKKLSYYKKTR 236 Query: 235 D-IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRH 293 + + +S+ S +L+ G LSPR ++ +K+ +++ + + ELIWR+F+++ Sbjct: 237 NGLVGTAYSSKFSAWLANGSLSPRMIYHEVKKYESEII--KNQSTYWMIFELIWRDFFKY 294 Query: 294 LMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRL 353 + + + I + EWN DS L+Q W G T P ++A M +L GWM NR Sbjct: 295 ISLKHGNNIFKLEGI-LHKAYEWNTDSKLIQQWIDGETAAPFVNANMLELKHTGWMSNRG 353 Query: 354 RMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTI 413 R AS+ K L +DWRIG YF S L+D D+ SN G W + + GND P R FN + Sbjct: 354 RQNVASYFAKTLELDWRIGAAYFESLLIDYDVHSNYGNWLYVSGVGND--PRNRTFNVKL 411 Query: 414 QGKRFDPQGTFIRHWL 429 Q +R+D F WL Sbjct: 412 QAERYDANKKFQNLWL 427 >gi|329902812|ref|ZP_08273260.1| Deoxyribodipyrimidine photolyase [Oxalobacteraceae bacterium IMCC9480] gi|327548607|gb|EGF33264.1| Deoxyribodipyrimidine photolyase [Oxalobacteraceae bacterium IMCC9480] Length = 508 Score = 293 bits (749), Expect = 6e-77, Method: Composition-based stats. Identities = 99/491 (20%), Positives = 196/491 (39%), Gaps = 33/491 (6%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M++ +VW + DLR+ D+ AL A V+ +++ P W +S + F+ SL Sbjct: 1 MTLSVVWFKRDLRLHDHAALTLAAARG--PVLCLYVIEPAMWAAQDVSNQHYQFLLESLS 58 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEIN-EVRRDKLLEK 125 ++ +L+++G + ++ LD+ Q + LF + + + +RD + + Sbjct: 59 ELDAALARRGGCLHV----AVGEVVDILDALLRQSPIADLFAHEETGNDISYQRDLAVGR 114 Query: 126 RLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185 + + ++ K + + Q + + + Sbjct: 115 WCRTHQVGWHESAQF-----GVVRRLQDRDKWQRHWEAHVAQACLPIPVLAF------AA 163 Query: 186 GPVTPSNIPRFFDYPFQAIDPMFP--IGEQNALHILRKFCKEKVYYYVEQRDIP--AIQG 241 P+TP+ +P DP G + A+ +L+ F ++ Y P A Sbjct: 164 CPLTPAVLPSSDALGLAPDDPPLRQRGGRRQAVAVLQSFLLDRSGQYRGGISSPLSAPTA 223 Query: 242 TSQLSPYLSIGVLSPRQCWNRLKEEFV---DLLIKPKSGAFSWLNELIWREFYRHLMAFY 298 S+LSPYL+ G LS R+ + +++ + K+G + + L W + + Sbjct: 224 CSRLSPYLAFGALSMREIVHATRKQLATMPATESRRKAGLTGFTSRLYWHCHFIQKLESE 283 Query: 299 PSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITA 358 P++ + E + + A G TG+P++DA + L GW++ R+R + Sbjct: 284 PALEYRNLHRGYDGLREGDWNQQHFDALVAGRTGWPLVDACVEMLRQTGWLNFRMRAMLV 343 Query: 359 SFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRF 418 S L + WR + Q LD + + Q +G + RI+NP Q Sbjct: 344 SVAAYPLWLHWRPVGLWLARQFLDYEPGIHWSQLQMQ--SGTTGINVPRIYNPIKQAHDH 401 Query: 419 DPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND------LSLNYPLPIVDHKKACHHTLN 472 DP G F+R WLP + VP ++ P + + + +P+VD ++A + Sbjct: 402 DPHGHFVRRWLPAMRKVPDAWLFEPWRMPAELQARYGVVVGHDIAMPLVDLEQATRLAKD 461 Query: 473 QYYAAKKQSLL 483 + + + Q + Sbjct: 462 KLFGLRAQPAV 472 >gi|260772995|ref|ZP_05881911.1| deoxyribodipyrimidine photolyase/cryptochrome family protein [Vibrio metschnikovii CIP 69.14] gi|260612134|gb|EEX37337.1| deoxyribodipyrimidine photolyase/cryptochrome family protein [Vibrio metschnikovii CIP 69.14] Length = 492 Score = 292 bits (748), Expect = 7e-77, Method: Composition-based stats. Identities = 112/492 (22%), Positives = 196/492 (39%), Gaps = 32/492 (6%) Query: 1 MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHF 60 M +TT S+++VW + DLR++D+ L AA +S + V+ P S R F Sbjct: 1 MMSTT--SINIVWFKRDLRLSDHPPLCAAL-DSGIPTLLVYFFEPMLLNDRHYSERHWRF 57 Query: 61 IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYE-INEVRR 119 ++ SL + + L+ G S + + L + + L+ +++ +N R Sbjct: 58 VWQSLQDINQQLASFGHQILIANVS----AEQGLATLAAHFSIQGLYSHQEVGLVNTFER 113 Query: 120 DKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPV 179 D ++ + I S+ S H K + +A + + V Sbjct: 114 DIAIQHWCTEQGI--SWHQSAYGAVRRAATHRQGWDKHWQAIMRAPLAMPNITTQGLISV 171 Query: 180 PAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAI 239 A L + R + Q GE A L F + + Y Q P++ Sbjct: 172 CATDLGLDNNVPSAWRRKEKGLQT------GGETLAKQTLEDFFQRRAKNYYFQISSPSL 225 Query: 240 Q--GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAF 297 S++SPYL+ G +S R+ + L + ++ + + L W + Sbjct: 226 ARLSCSRMSPYLAWGNISLREMYQTLLSYWNAAGLR--RSLIALASRLHWHCHFIQKFES 283 Query: 298 YPSV---CMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLR 354 + C+ + + P + D+ LL+AWK G TG P++DA MR L G+++ R+R Sbjct: 284 ECEMEFRCVNRAYEPLLAQ-ACQPDTELLEAWKSGQTGIPLVDACMRCLYHTGYLNFRMR 342 Query: 355 MITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQ 414 + S L + +WR G + LD + + +Q G + RI+NP Q Sbjct: 343 AMLVSVLTHHMNQNWRAGVGHLAQLFLDFEPGIHYAQFQMQ--AGVTGINTIRIYNPIKQ 400 Query: 415 GKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKN----DLSLN--YPLPIVDHKKACH 468 + D QG FIR W+PEL VP + P L + Y P++D Sbjct: 401 AQEHDAQGVFIRQWVPELAEVPLSLLFEPWQMSPMEAMMYQLPADSRYLNPVIDVAACAK 460 Query: 469 HTLNQYYAAKKQ 480 ++ +A +K+ Sbjct: 461 QARDRLWAWRKR 472 >gi|314933001|ref|ZP_07840367.1| putative deoxyribodipyrimidine photolyase [Staphylococcus caprae C87] gi|313654320|gb|EFS18076.1| putative deoxyribodipyrimidine photolyase [Staphylococcus caprae C87] Length = 457 Score = 292 bits (748), Expect = 7e-77, Method: Composition-based stats. Identities = 139/474 (29%), Positives = 221/474 (46%), Gaps = 30/474 (6%) Query: 12 VWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQKS 71 V L R +N N + +I E++ + + H+ Y +L + + Sbjct: 5 VILNRVFRTNNNPLFEYVYQNMEDIEKCYYIIPKEEF--SNEATMKRHYYYGTLQKFVNT 62 Query: 72 LSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQ---YEINEVRRDKLLEKRLQ 128 L I F + L + ++ + ++ Y E EK + Sbjct: 63 LYDHDI-------QPFLIDYDELIDFSKEKGINQVVIAGDIMSYHKEEYDILHQKEKFKK 115 Query: 129 HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188 + + + P N+ + YKV+T F K L++ + + + I G Sbjct: 116 EDISVTTIRANHYFKPSKTRNNKGEPYKVFTSFYKKWRPYLMKRTVYNYDLKDIAKVGVK 175 Query: 189 TPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPY 248 + + + I E+NA + F + + Y +R+ TSQLS Y Sbjct: 176 SKQKVKGNYSQSG--------ISEENAQYKWSDFLDKDIEDYDTKREYLPEVLTSQLSIY 227 Query: 249 LSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFI 308 L+ GVL Q +N L + K + +++ ELI+REFY M YP F Sbjct: 228 LAYGVLDIIQIFNDLLNSY----DKDEQNYEAFIRELIFREFYYVFMTQYPKTAHH-AFK 282 Query: 309 PWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVD 368 + + W+ + W +G TGFPIIDAAM +LNT G+MHNR+RM+ + FL KDL +D Sbjct: 283 EKYQNLNWSYNEENFDLWTKGKTGFPIIDAAMGELNTTGYMHNRMRMVVSQFLTKDLFID 342 Query: 369 WRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHW 428 W GEEYF +L+D D ASN GWQW+ASTG D+VPYFR+FNP Q +RFD + +I+ + Sbjct: 343 WTWGEEYFRQKLIDYDAASNVHGWQWSASTGTDAVPYFRMFNPVRQSERFDKKALYIKKF 402 Query: 429 LPELNNVPTQYIHAPHSWLDK-----NDLSLNYPLPIVDHKKACHHTLNQYYAA 477 +P LN+V +Y+H + + +L +YP IVDH ++ H ++++ A Sbjct: 403 IPILNDVDAKYLHDTYKHERQIKEQGIELGKDYPKQIVDHSESRDHVMSEFKAL 456 >gi|186686938|ref|YP_001870131.1| DNA photolyase, FAD-binding [Nostoc punctiforme PCC 73102] gi|186469290|gb|ACC85090.1| DNA photolyase, FAD-binding [Nostoc punctiforme PCC 73102] Length = 516 Score = 292 bits (748), Expect = 8e-77, Method: Composition-based stats. Identities = 127/483 (26%), Positives = 212/483 (43%), Gaps = 22/483 (4%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 +HL+W R DLR+TDN+ + + +DA+V+ FI P + + + F++ SL ++ Sbjct: 1 MHLLWFRRDLRLTDNE-IVTSSSGNDARVLPFFIIDPWFYTWADVGTARVRFLFESLEKL 59 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEI-NEVRRDKLLEKRL 127 +L + + ++ E + KLF+NR ++ + RDK + Sbjct: 60 NSNLQKLSSRLYLFEGNSTGIVQELTRQLTERGYKPKLFFNRDVQVEYGINRDKTIVDFY 119 Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187 + + + + L A Q + + Q+ + Sbjct: 120 KQ------LNLDYHIGLNNFLQSAEQRDEWVNEYYTYQRQSQYKTPAIINTPQITLNLPQ 173 Query: 188 VTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ---GTSQ 244 +T + + + + FP GE A L F K++ Y Y + P + TS Sbjct: 174 LTFEELKQKYHRFWAVEKVYFPGGETQAQAQLDSFLKKRYYGYHWKLSRPMLSQLGATSH 233 Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKS--GAFSWLNELIWREFYRHLMAFYPSVC 302 LSP+L+ G +S R + K L +PK+ ++ + L W + + + F+P + Sbjct: 234 LSPHLTFGTISTRTVYQSTKALAEQLKTQPKAEFSLKAFRDRLRWHDSFTQRLYFHPEIA 293 Query: 303 MGKPFIPWTEKIEWNK----DSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITA 358 + + + L QAW+QG TGFP++DA+MRQL T+GWM+ R+R + A Sbjct: 294 YTNRYREFDKLYTPETLSGAKQELYQAWQQGMTGFPLVDASMRQLQTMGWMNFRMRAMCA 353 Query: 359 SFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRF 418 +FL + V W G +++M+ L+DGDLA +N WQ A N FRI+NP+ Sbjct: 354 TFLTINCGVSWHHGAKHYMNYLVDGDLAIDNWQWQMQAGVTNPLSDTFRIYNPSKNIAEK 413 Query: 419 DPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478 DP G FI HW+PEL I +K + NYP I+D K + Sbjct: 414 DPLGEFIYHWIPELRGYSLLEIEQ-----EKYIETSNYPKVILDWSKTRKVNGKIVSDLR 468 Query: 479 KQS 481 KQ+ Sbjct: 469 KQT 471 >gi|225010911|ref|ZP_03701378.1| cryptochrome, DASH family [Flavobacteria bacterium MS024-3C] gi|225004958|gb|EEG42913.1| cryptochrome, DASH family [Flavobacteria bacterium MS024-3C] Length = 427 Score = 292 bits (748), Expect = 8e-77, Method: Composition-based stats. Identities = 123/432 (28%), Positives = 196/432 (45%), Gaps = 22/432 (5%) Query: 10 HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQ--HGISARQSHFIYASLLQ 67 +VW N+LR+ DN L AAC N+ +V+ V+ PE+ I ++ F SLL Sbjct: 3 SIVWFTNNLRVADNPLLTAACKNNANEVVGVYCLNPEKLDGDFPKIGPFRAKFNVESLLD 62 Query: 68 VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127 +++SL + I F D + L Y + + L++ + + EV +K +E ++ Sbjct: 63 LKRSLEELNIPFAIL----IGDPTKRLPEYINENNIGTLYFQKVWHEEEVLINKEIEAKI 118 Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187 + S D LL P I ++ KV+TPFRK + L +P + Sbjct: 119 SPNIQLVSLYDQFLLGPEIIPFELYKLPKVFTPFRKKVEATLEVPAPLEVPAKQTNTSNT 178 Query: 188 VTPSNIPRFFDYPFQAIDPM--------FPIGEQNALHILRK--FCKEKVYYYVEQRD-I 236 + + + + F GE+ A + F + V Y E R+ + Sbjct: 179 PLFYSDALWASISKELLSIKIDSRSAFPFKGGEKAAQERIDHYFFSTDHVAQYKETRNGL 238 Query: 237 PAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMA 296 + +++LS +L+ G +S R + +LK + +K + L EL+WREF++++ Sbjct: 239 IGLDYSTKLSAWLANGCISARTIYYQLKAY--EKTVKANESTYWVLFELLWREFFKYVGL 296 Query: 297 FYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMI 356 + + I + D + W G T P I+A M++L+ GWM NR R Sbjct: 297 KHKNDLFKSGGINH-KSFAQGNDPKVYNDWISGTTHSPFINANMKELSQTGWMSNRGRQN 355 Query: 357 TASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGK 416 AS+ K L DWRIG YF SQL+D D+ SN W + + GND P RIFNP Q Sbjct: 356 VASYWSKTLDQDWRIGATYFESQLIDYDVDSNWANWMYTSGVGND--PRDRIFNPERQAD 413 Query: 417 RFDPQGTFIRHW 428 +DPQ F + W Sbjct: 414 MYDPQKAFQKLW 425 >gi|317406109|gb|EFV86370.1| deoxyribodipyrimidine photo-lyase [Achromobacter xylosoxidans C54] Length = 277 Score = 292 bits (747), Expect = 9e-77, Method: Composition-based stats. Identities = 136/280 (48%), Positives = 177/280 (63%), Gaps = 3/280 (1%) Query: 201 FQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCW 260 AI ++P GE A L F + Y ++RD P++ TS LSPYL+ GVLSP Q Sbjct: 1 SDAIRALWPAGESAAGARLDAFADGVIDAYRDERDFPSLPATSCLSPYLAAGVLSPGQAL 60 Query: 261 NRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDS 320 L K+GA +W+NEL+WREFY+HL+A P++ M +P P T + W Sbjct: 61 RAALAANQGELESGKAGAATWINELLWREFYQHLLAACPALSMHQPMKPETAAVPWRDAP 120 Query: 321 HLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQL 380 L+AW+QG TG PI+DAAMRQL +GWMHNRLRM+TA FL K+LL+DWR+GE +FM+ L Sbjct: 121 DDLRAWQQGRTGLPIVDAAMRQLLALGWMHNRLRMVTAMFLTKNLLIDWRLGEAWFMAHL 180 Query: 381 LDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYI 440 +DGDLA+NNGGWQW+ASTG DSVPYFR+FNP Q ++FDP+G F+R WLPEL ++ I Sbjct: 181 VDGDLAANNGGWQWSASTGADSVPYFRVFNPLSQSRKFDPRGVFLREWLPELAHLDDNAI 240 Query: 441 HAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQ 480 H P YP PIVD ++ L + K Sbjct: 241 HDPSPMERAAA---GYPAPIVDLPQSRLRALEAFGNLPKA 277 >gi|171057933|ref|YP_001790282.1| deoxyribodipyrimidine photo-lyase [Leptothrix cholodnii SP-6] gi|170775378|gb|ACB33517.1| Deoxyribodipyrimidine photo-lyase [Leptothrix cholodnii SP-6] Length = 493 Score = 292 bits (747), Expect = 1e-76, Method: Composition-based stats. Identities = 105/483 (21%), Positives = 180/483 (37%), Gaps = 44/483 (9%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 MS +VW + DLR+TD+ L A A +A+FI P R ++ L Sbjct: 1 MSRAVVWFKRDLRVTDHAPLAEAARCDAA--LALFIIEPAWLDSPECHPRHVTWLLKCLA 58 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEI-NEVRRDKLLEK 125 ++ +L+ +G+ +++E L + + T+LF + + RD+ + + Sbjct: 59 PLRDALAARGLPLLVRTG----EAVEVLAALRREFACTRLFSHEETGPGWSYARDRAVAR 114 Query: 126 RLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185 + + + P ++ +++ + V+ A Sbjct: 115 WCRAHGVAWTEW-----PQTGVIRRLKDRRGWAGRWQQRMDAPCVRVPAG--WRAAPGFA 167 Query: 186 GPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIP--AIQGTS 243 P+++P + P GE A +L+ F + Y P A G S Sbjct: 168 PSTLPADLPTLRELGVATAPDTPPAGEAAAQQMLQSFLGGRALGYRRHLSSPLAAEAGCS 227 Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKS-GAFSWLNELIWREFYRHLMAFYPSVC 302 +LS +L+ G LS R + + + + L W + + P++ Sbjct: 228 RLSEHLAFGTLSLRMLHQATEATLRATSDRELAYSLRGFAGRLRWHCHFMQKLEDEPAIE 287 Query: 303 MGK------PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMI 356 P D LQAW +G TGFP++DA MRQL GW++ R+R + Sbjct: 288 WRNFARSADGLRPGDGSALQTADRERLQAWCEGRTGFPMVDACMRQLRATGWLNFRMRAM 347 Query: 357 TASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGK 416 SF L + WR + Q LD + + Q +G + RI++P Q Sbjct: 348 LVSFAAYHLWLHWREPGLFLARQFLDFEPGIHWS--QMQMQSGTTGINTLRIYSPAKQAL 405 Query: 417 RFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYA 476 DPQG ++R W+PE S YP PIVD + A + Y Sbjct: 406 DHDPQGEYVRRWVPEFG-------------------SAAYPAPIVDERAAVAAAKQRLYG 446 Query: 477 AKK 479 ++ Sbjct: 447 LRQ 449 >gi|109896482|ref|YP_659737.1| deoxyribodipyrimidine photolyase [Pseudoalteromonas atlantica T6c] gi|109698763|gb|ABG38683.1| deoxyribodipyrimidine photo-lyase family protein (cryptochrome) [Pseudoalteromonas atlantica T6c] Length = 495 Score = 292 bits (747), Expect = 1e-76, Method: Composition-based stats. Identities = 105/485 (21%), Positives = 197/485 (40%), Gaps = 31/485 (6%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 +++VWL+ DLR+ D++AL+AA V+ +++ P R F++ S++ + Sbjct: 6 INVVWLKRDLRLRDHQALFAAAQQ-PLPVVMMYLFEPSVIADPHYDVRHWRFVWQSIVDL 64 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEIN-EVRRDKLLEKRL 127 L+ F+++ + + ++ +++ + +RDK + + L Sbjct: 65 NSQLADYNARIIVL----FEEAHSVFAQLMQRFHIAGVYSHQEIGLACTYKRDKAIARML 120 Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187 I + G ++ A + K + L + Sbjct: 121 DAEGISWHEYNH-----GGVIRGATHRRDWEQNWDKHMNAQCADTPLHEVNWLT---FAT 172 Query: 188 VTPSNIPRFFDYPFQAIDPMFP-IGEQNALHILRKFCKEKVYYYVEQRDIP--AIQGTSQ 244 + + ++ P F GE+ A + L F KE+ Y P + S+ Sbjct: 173 LMTLDESEALPQEYKTQRPAFQLGGEKRAWYTLHHFLKERGKAYAYSVSSPIKSRTACSR 232 Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304 LSPYL+ G +S RQ + + ++ + L W + + Sbjct: 233 LSPYLAWGNISTRQVYQST--ASKKHKDGWQRAINAFRSRLHWHCHFIQKFESESDMEF- 289 Query: 305 KPFIPWTEKIEWNKDSHL---LQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFL 361 +P E+ + LQAWK G TG PI+DA++R L+ G+++ R+R + SFL Sbjct: 290 RPVNKAYLAYEYEQGEQKDANLQAWKTGQTGIPIVDASIRCLHQTGYLNFRMRAMLVSFL 349 Query: 362 VKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQ 421 L +DWR G + LD + + +Q AS R++NP Q + DPQ Sbjct: 350 CHHLNIDWREGAIHLAQLFLDFEPGIHYPQFQMQASVT--GTNLIRLYNPVKQSQDKDPQ 407 Query: 422 GTFIRHWLPELNNVPTQYIHAPHSWLD------KNDLSLNYPLPIVDHKKACHHTLNQYY 475 G FIR ++PE++++P IH P + +L YP P++D ++ + + Sbjct: 408 GQFIRRFIPEISDLPDALIHTPWLLTPMECQIYEVELGRTYPHPMIDLEQTGKRARDTLW 467 Query: 476 AAKKQ 480 +K+ Sbjct: 468 TFQKR 472 >gi|301097555|ref|XP_002897872.1| cryptochrome, putative [Phytophthora infestans T30-4] gi|262106620|gb|EEY64672.1| cryptochrome, putative [Phytophthora infestans T30-4] Length = 694 Score = 292 bits (747), Expect = 1e-76, Method: Composition-based stats. Identities = 128/549 (23%), Positives = 205/549 (37%), Gaps = 94/549 (17%) Query: 10 HLVWLRNDLRITDNKALYAACH---------NSDAKVIAVFIATPEQWRQHGISARQSHF 60 +VW R DLRI DN AL AA + + ++ ++I + ++ + F Sbjct: 99 AIVWFRRDLRIHDNLALDAAMRAQMQLQKAGDEEMALLPIYIL--HRPKRQRCGPVRFQF 156 Query: 61 IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120 + ++ + +S+++ D+ E L + VT LF+ V RD Sbjct: 157 LLEAIEDLARSIAKLDGRLLVLSG----DAEEVLRTVIAAWGVTDLFFEAGVAHYAVDRD 212 Query: 121 KLLEKRLQH-RVICKSFDDSVLLPPGSILN-HALQMYKVYTPFRKALIQNLVQADLRSLP 178 + + V + L P I+ ++ Q Y + + P Sbjct: 213 NRVRAIAKSLDVNVTTIRGVTLYNPHEIIRLNSGQAPTDYERLLEITEKMPQPTQPIPAP 272 Query: 179 VPAIRLTGPVTPSNIPRFFD----------------------------------YPFQAI 204 V + T D + Sbjct: 273 VKLLNAACFSTDKLFSLLEDVCQQNPSEADVIAGVAGDVKKTESELFVAPPLTAFGLTPP 332 Query: 205 DPMFP--IGEQNALHILRKFCKE--KVYYYVEQRDIP---AIQGTSQLSPYLSIGVLSPR 257 P P GE A+ L FC++ +V + + + P T+ LS YLS G LS R Sbjct: 333 TPHAPLIGGESAAMKRLDDFCEDERRVGQFEKPKTSPVSIDGPSTTTLSAYLSFGCLSAR 392 Query: 258 QCWNRLKEEFVDLLIKPKSGAF-SWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEW 316 + + R+ + +P + +L+WREF+ M + + P ++I+W Sbjct: 393 EFFYRIMFIQLQYPHRPGLPTQVTLEGQLMWREFFYCYMCGTRNF-DSQELNPSCKQIDW 451 Query: 317 N-----------KDSHL---------------LQAWKQGYTGFPIIDAAMRQLNTIGWMH 350 D LQ WK G TGFP IDA MRQ+N GW H Sbjct: 452 RLLNEYYVSHPEYDEQEPKKVTEADEKLAMRQLQCWKDGRTGFPWIDAVMRQINQEGWTH 511 Query: 351 NRLRMITASFLVKD-LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIF 409 + R A FL + L + W G YF +++D D N G W W +++ + Y R+ Sbjct: 512 HAGRHAVACFLTRGVLYISWLRGATYFQEKMIDLDWPINVGNWLWVSASCFFT-NYRRMA 570 Query: 410 NPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND------LSLNYPLPIVDH 463 +P+ +R+D QG FIR ++P L N+P +Y+ P K + NYP PIVD Sbjct: 571 SPSTFPQRWDQQGQFIRKYIPALRNMPDKYVFEPWKAPLKVQRDADCLIGKNYPFPIVDS 630 Query: 464 KKACHHTLN 472 K A + Sbjct: 631 KLAMSRCIA 639 >gi|218296790|ref|ZP_03497496.1| Deoxyribodipyrimidine photo-lyase [Thermus aquaticus Y51MC23] gi|218242879|gb|EED09413.1| Deoxyribodipyrimidine photo-lyase [Thermus aquaticus Y51MC23] Length = 417 Score = 291 bits (746), Expect = 1e-76, Method: Composition-based stats. Identities = 135/467 (28%), Positives = 205/467 (43%), Gaps = 54/467 (11%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 ++LVW R DLR+ D+ AL A S ++ + + P R S R+ + ++ + Sbjct: 1 MNLVWHRGDLRLKDHPALLQAL--SQGPLVGLVVLDPNNLRT---SPRRRAWFLENVRAL 55 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128 + + ++G + + E + + + ++ + Y RD E L Sbjct: 56 RAAYRERGGALWVVEGPPW----EVVPQVARRLKAKAVYALKSYTPYGRYRDARTEAAL- 110 Query: 129 HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188 +L P I + ++VYTPF Q L +P G + Sbjct: 111 ------GVPLHLLPAPHLIPPDLPRAHRVYTPF-SRNFQGLDPPLPAPEALPQAPEEGEI 163 Query: 189 TPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPY 248 + P+ GE+ A L F + K+ Y +RD +G S+LSPY Sbjct: 164 PQEDPGL----------PLPEPGERAARARLHAFLEAKLPRYPLERDRLDGEGGSRLSPY 213 Query: 249 LSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFI 308 ++GVLSPR+ + L + GA W+ EL+WR+F HL+ +P + + Sbjct: 214 FALGVLSPREAAW-------EALRRGGEGARKWVAELLWRDFSYHLLYHFPEMA-QRALD 265 Query: 309 PWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVD 368 E + W +D L QAW G TG P++DAAMR+L G++ NR RM A F VK LL+ Sbjct: 266 ARFEALPWTEDEELFQAWYLGKTGVPLVDAAMRELQATGFLSNRARMAVAQFAVKYLLLP 325 Query: 369 WRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHW 428 W+ EE F LLDGD A N GWQWA G D+ PYFR+FN QG+R DP G ++R + Sbjct: 326 WQRAEEAFRHLLLDGDRAVNLQGWQWAGGLGVDAAPYFRVFNLVEQGRRHDPDGAWLRRF 385 Query: 429 LPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYY 475 PE + + P+VD +A L Sbjct: 386 APEYPSYEPK-------------------DPVVDLAEARRRYLALAK 413 >gi|149195753|ref|ZP_01872810.1| Deoxyribodipyrimidine photolyase [Lentisphaera araneosa HTCC2155] gi|149141215|gb|EDM29611.1| Deoxyribodipyrimidine photolyase [Lentisphaera araneosa HTCC2155] Length = 481 Score = 291 bits (746), Expect = 1e-76, Method: Composition-based stats. Identities = 116/487 (23%), Positives = 195/487 (40%), Gaps = 34/487 (6%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 +++VWL+ DLR+ D+ L AA S+ + ++ P +S +FIY SL+++ Sbjct: 4 INVVWLKRDLRLNDHACL-AAAEASELPYLIMYCFEPSLMNAPDVSENHLNFIYLSLMEM 62 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINE-VRRDKLLEKRL 127 Q L+ D+ + L + +++ LF ++++ +RD+ + Sbjct: 63 QTKLAPFNRPLYILHA----DATQALGYIQKKYQISTLFAHQEHGTARTWKRDRQVIDFC 118 Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187 I + I + ++V+ P + P Sbjct: 119 WQEEIEL-----LEAEHSGIQRGIQNRDHWDKAWFSWHKTDIVRNSYSISPFNFDKSLFP 173 Query: 188 VTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPA--IQGTSQL 245 F YP Q M GE A H L+ F E+ Y P+ + +L Sbjct: 174 AALQFKKTFKTYPKQ----MQAPGENTAHHYLKSFLAERGKNYHRFISKPSESRKSCGRL 229 Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLM---AFYPSVC 302 SPYL+ G +S RQ + +K K L L WR + Y +C Sbjct: 230 SPYLAWGNVSSRQVYQLVKA--SPKYKDNKRAYSGLLTRLKWRSHFIQKFEVECSYEYLC 287 Query: 303 MGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLV 362 + K + E + + ++ ++AWK G TG+P++DA MR L+ GW++ R+R + SF Sbjct: 288 LNKGY----ELMSLDFNAEFIEAWKDGKTGYPLVDACMRCLHATGWINFRMRAMLTSFFC 343 Query: 363 KDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQG 422 L DWR G + LD + + +Q G + RI+NP Q DP+G Sbjct: 344 HHLAQDWRDGVYHLAKLFLDYEPGIHFPQFQMQ--AGTTGINTVRIYNPIKQSMDNDPEG 401 Query: 423 TFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLN------YPLPIVDHKKACHHTLNQYYA 476 FIR W+PEL ++ IH P YP PI+D K ++ + Sbjct: 402 EFIRQWIPELKDLSNDEIHEPWKIEIMEAKMKGYTNLHLYPAPIIDIKDTYSLARDRIWG 461 Query: 477 AKKQSLL 483 + +L+ Sbjct: 462 LRSHALV 468 >gi|297539501|ref|YP_003675270.1| Deoxyribodipyrimidine photo-lyase [Methylotenera sp. 301] gi|297258848|gb|ADI30693.1| Deoxyribodipyrimidine photo-lyase [Methylotenera sp. 301] Length = 528 Score = 291 bits (745), Expect = 2e-76, Method: Composition-based stats. Identities = 110/494 (22%), Positives = 197/494 (39%), Gaps = 38/494 (7%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 V++VW + DLRI D+ AL+ AC V+ +F W + + F+ L+ + Sbjct: 5 VYIVWFKRDLRIQDHAALFEACELGQ--VLPIFTWDSSVWNGGDYATQHQMFVEECLVSL 62 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRR-DKLLEKRL 127 +++L G+ IE L+ + R+ L + + N + DK + Sbjct: 63 RRNLQTIGLSLL----EVRGGIIEVLNHIAMFYRIGGLHSHEETGNNNTYQLDKAVASWC 118 Query: 128 Q-HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 + V + + ++ L+ ++T + + Q L Sbjct: 119 KAQNVNWHEYPHNGVV-------RRLKNRDIWTAVWEK--RMSAQTMPLPTQAKMATLPL 169 Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIP--AIQGTSQ 244 + P+N Y G + A +L F + Y P + S+ Sbjct: 170 DILPNNDVSHLRYTQADKPFRQKGGREEASRVLHTFLNGRGSRYRGGISSPLSSESAGSR 229 Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPK-------SGAFSWLNELIWREFYRHLMAF 297 LSPYL+ GVLS R+ L+++ + P +G S+ + L W + + Sbjct: 230 LSPYLAWGVLSMREVVQNLRQKKSSIQASPSTYPNGLLAGLASFESRLHWHCHFMQKLES 289 Query: 298 YPSV---CMGKPFIPWTEK-IEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRL 353 P++ + F + ++ + + L AWK G TG+P++DA M L GW++ R+ Sbjct: 290 EPAIEYENLHPAFNGFRDQSYASAELQNRLTAWKAGQTGWPLVDACMAMLRDTGWINFRM 349 Query: 354 RMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTI 413 R + S L + WR + + LD + + Q +G + RI+NP Sbjct: 350 RAMLMSTASYLLWLHWRETGLHLAREFLDYEPGIHWSQVQMQ--SGTTGINTLRIYNPVK 407 Query: 414 QGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDK------NDLSLNYPLPIVDHKKAC 467 Q K DP+G F+R WLP L NVP +I P + + ++YP P+V+ +A Sbjct: 408 QAKDQDPEGIFVRRWLPALRNVPNTWIFQPWLMPESLQLEYGCRIGIDYPAPLVNIDQAF 467 Query: 468 HHTLNQYYAAKKQS 481 ++ + S Sbjct: 468 KLAKTKFSQLRMNS 481 >gi|15341192|gb|AAK94666.1| cryptochrome 2a [Xenopus laevis] Length = 501 Score = 291 bits (744), Expect = 2e-76, Method: Composition-based stats. Identities = 109/437 (24%), Positives = 173/437 (39%), Gaps = 38/437 (8%) Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH- 129 SL + + + V++L + E RD ++ K + Sbjct: 2 SLRTLNSRLFVVRG----QPADVFPRLFKEWGVSRLTFEYDSEPFGKERDAVIMKLAKEA 57 Query: 130 RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLV-QADLRSLPVPAIRLT--- 185 V + L L+ +++ P Q ++ + ++ P P++ Sbjct: 58 GVEVVVENSHTLYD----LDRIIELNGHSPPLTYKRFQAIISRMEIPRRPAPSVTRQQME 113 Query: 186 --------GPVTPSNIPRFFDYPF---QAIDPMFPIGEQNALHILRKFCKEKVYYYVEQR 234 +P + F ++P GE AL L + + K + +R Sbjct: 114 ACRAEIKRNHDETYGVPSLEELGFHRENKGSAIWPGGETEALARLDRHLERKAWVANYER 173 Query: 235 DIPAIQGT----SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREF 290 + LSPYL G LS + + RL+E + + K S +L+WREF Sbjct: 174 PRMNANSLLASPTGLSPYLRFGCLSCKLFYYRLQELYRKVK-KNNPPPLSLFGQLLWREF 232 Query: 291 YRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMH 350 + P + P +I W+K+ L W +G TGFP IDA M QL GW+H Sbjct: 233 FYTAATNNPKFDQMEG-NPICVQIPWDKNPKALAKWAEGKTGFPWIDAIMTQLRQEGWIH 291 Query: 351 NRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIF 409 + R A FL + DL W G + F LLD D + N G W W S +F + Sbjct: 292 HLARHAVACFLTRGDLWNSWECGVKVFDELLLDADFSVNAGSWMW-LSCSAFFQQFFHCY 350 Query: 410 NPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLD------KNDLSLNYPLPIVDH 463 P G+R DP G FIR +LP L P++YI+ P S + K + ++YP PIV+H Sbjct: 351 CPVGFGRRTDPNGDFIRRYLPVLKAFPSRYIYEPWSAPESVQKQAKCIIGIDYPKPIVNH 410 Query: 464 KKACHHTLNQYYAAKKQ 480 +A + + +Q Sbjct: 411 AEASSMNIERMKQTYQQ 427 >gi|159043774|ref|YP_001532568.1| deoxyribodipyrimidine photo-lyase [Dinoroseobacter shibae DFL 12] gi|157911534|gb|ABV92967.1| deoxyribodipyrimidine photo-lyase [Dinoroseobacter shibae DFL 12] Length = 514 Score = 290 bits (743), Expect = 3e-76, Method: Composition-based stats. Identities = 112/476 (23%), Positives = 182/476 (38%), Gaps = 26/476 (5%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 LVW + DLR+ D+ AL A V+ V+I PE W+ +SARQ F + + + Sbjct: 8 LVWFKRDLRVADHPALARAAALG--PVLPVYIVEPEYWQLRDVSARQWAFTRECVADLSR 65 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYE-INEVRRDKLLEKRLQH 129 L+ G + +++ L+ +T + + + RD+ + + Sbjct: 66 ELAALGAPLRIETG----EAVAVLERLRAAHGITLMISHEEIGNGWTYARDRAVADWARA 121 Query: 130 RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189 + + L G + + T R + LR + G + Sbjct: 122 QGVAWEE----LAQSGVVRRLNGRDGWARTRDRFMAQPQVAVPVLRGVDG----GGGALP 173 Query: 190 PSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIP--AIQGTSQLSP 247 + D P G AL +L F E+ Y P + S+LSP Sbjct: 174 DAAALGLADDPCPG---RQRGGRDEALSLLGGFLTERGRTYRAAMANPLDGAEACSRLSP 230 Query: 248 YLSIGVLSPRQCWNRLKEEFVDLLIKPKSGA---FSWLNELIWREFYRHLMAFYPSVCMG 304 +L++G LS R+ ++ S+ L WR+ + + P + Sbjct: 231 HLALGTLSGREAVQAAAMRKAEVKGTRDGWIGAMKSFEARLAWRDHFMQKLEDAPRLEHA 290 Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364 + D L AW +G TG P +DA MR L GW++ R R + + Sbjct: 291 CLHSAYEGLRPAVPDPVRLGAWAKGETGLPFVDACMRSLIATGWLNFRARAMLVAVASYH 350 Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424 L +DWR D + + Q +G + RI+NP QG DP+G F Sbjct: 351 LWLDWRASGTILGRYFTDFEPGIHWPQVQMQ--SGTTGMNTVRIYNPVKQGHDNDPEGVF 408 Query: 425 IRHWLPELNNVPTQYIHAPHSWLDKND-LSLNYPLPIVDHKKACHHTLNQYYAAKK 479 R WLPEL VP +Y+ P W + L+ YP PIV+ K A ++ +A ++ Sbjct: 409 TRRWLPELAEVPDRYLQEPWRWEGADSVLNRTYPAPIVEPKAAAAAARDKVWAVRR 464 >gi|289741509|gb|ADD19502.1| deoxyribodipyrimidine photolyase/cryptochrome [Glossina morsitans morsitans] Length = 536 Score = 290 bits (743), Expect = 3e-76, Method: Composition-based stats. Identities = 124/516 (24%), Positives = 205/516 (39%), Gaps = 45/516 (8%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDA--KVIAVFIATPEQWRQHGISARQSHFIYAS 64 MSV+++W R+ LR+ DN AL A + + ++ +FI E + F+ S Sbjct: 1 MSVNVLWFRHGLRLHDNPALLEALADREKGIALVPIFIFDGESAGTKCTGYNRLRFLLDS 60 Query: 65 LLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLE 124 L + + Q + + KL + E RRD ++ Sbjct: 61 LRDLDDQFRCQRGRLYTFQG----NPTTIFKELHECFGINKLCVEQDCEPIWNRRDNDVK 116 Query: 125 KRLQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYT------------PFRKALIQNLVQ 171 I L P ++ + + P R A N Sbjct: 117 VLCNELGIKWVEKISHTLWNPRQVIQTNGGIPPLTYQMFLHTVQVIGLPPRPAENANWKG 176 Query: 172 ADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPM----FPIGEQNALHILRKFCKE-- 225 D+ ++ + T P F+ + ++ + + GE AL +L + K Sbjct: 177 VDILNINETILEKLPGFTEIPQPEQFNVFAEDLNRLALVKWKGGETEALILLEERLKVEG 236 Query: 226 ---KVYYYVEQRDIPAIQGTSQ-LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKS----- 276 K YY+ + P I T + +SP+L G LS R+ + + + F D+ K Sbjct: 237 EAFKRGYYLPNQANPNILETPKSMSPHLRFGCLSVRKFYWAVHDLFEDVQQHVKMFGFQI 296 Query: 277 -GAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNK-DSHLLQAWKQGYTGFP 334 +LIWRE++ + P + I W + L+ WK G TGFP Sbjct: 297 MSGAHITGQLIWREYFYTMSVNNPYYDRMEE-NEICLNIPWAPVNDEQLENWKLGKTGFP 355 Query: 335 IIDAAMRQLNTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQ 393 ++DAAMRQL GW+H+ LR A+FL + L +W G ++F+ LLD D + G W Sbjct: 356 LVDAAMRQLLAEGWIHHTLRNTVATFLTRGGLWFNWEHGLQHFLKYLLDADWSVCAGNWM 415 Query: 394 WAASTGNDSVPYFR-IFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWL----- 447 W +S+ + + + P KR DP G +I+ ++PEL +VP +YIH P Sbjct: 416 WVSSSAFERLLDSSLVTCPLAMAKRLDPFGQYIKQYVPELAHVPKEYIHEPWRMPLSEQK 475 Query: 448 -DKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQSL 482 K + +YP I+D KA + ++ + Sbjct: 476 RSKCIIGEHYPKRIIDFVKAAESNMTAMRNLRQDLM 511 >gi|149926570|ref|ZP_01914831.1| deoxyribodipyrimidine photolyase family protein [Limnobacter sp. MED105] gi|149824933|gb|EDM84147.1| deoxyribodipyrimidine photolyase family protein [Limnobacter sp. MED105] Length = 559 Score = 290 bits (742), Expect = 3e-76, Method: Composition-based stats. Identities = 115/517 (22%), Positives = 205/517 (39%), Gaps = 51/517 (9%) Query: 7 MSVHLVWLRNDLRITDNKALYAA---CHNSDAKVIAVFIATPEQWRQHGISARQSHFIYA 63 M +HLVWL+ DLR++D+ +AA S+ V+A++ P+ RQ + + F Sbjct: 1 MHLHLVWLKKDLRLSDHAPWHAATKAAKESNGCVVALYCLEPKLIRQPDSAPQHFEFARE 60 Query: 64 SLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYE-INEVRRDKL 122 SL ++ + L ++ + + N +++ + C Q + + +++ RDK Sbjct: 61 SLQELAEQLPEQ-VPLLLAKA-NAPVALQTMALCCQQISI---YSHQETGNWASFVRDKE 115 Query: 123 LEKRLQ-HRVICKSFDDSVLLPPGSILNHALQMYKVYTPF--------------RKALIQ 167 ++ + H + F ++ ++ + +++ Sbjct: 116 VKAWCESHSIAWLEFQNNAVVRKLKNRDEWGKLWLDTMRKPVLPVPDFSELPQATWFDFP 175 Query: 168 NLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFP--IGEQNALHILRKFCKE 225 Q L +P ++L + P YP D G Q A L +F E Sbjct: 176 QNFQQQLEVNGLPCVQLNRSLWPQWAQYVHFYPKHLTDKTLRQRGGRQQAQRCLSEFLSE 235 Query: 226 KVYYYVEQRDIP--AIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVD---------LLIKP 274 + Y + P A S+LSPYL+ GV+S R+ L + + Sbjct: 236 RGMNYRFEMSSPLSAESACSRLSPYLAFGVISIREMLEALSQARQQLTESSLLPKAQTQW 295 Query: 275 KSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFI-----PWTEKIEWNKDSHLLQAWKQG 329 K S+ + L W + + P + ++ ++ L W +G Sbjct: 296 KQSLKSFESRLHWHCHFIQKLESEPELEFRSAHRGLNAMRNFAELSPEENQKALA-WIEG 354 Query: 330 YTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNN 389 TGFP++DA MR L GW++ R+R + +F L +DWR + LD + + Sbjct: 355 RTGFPMVDACMRMLRATGWVNFRMRAMLVAFASYQLWLDWRHTAPMLAREFLDYEPGIHY 414 Query: 390 GGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLD- 448 +Q +G + RI+NP Q K DPQG FIR W+PEL N+P +I P + Sbjct: 415 PQFQMQ--SGVTGINTLRIYNPVKQAKDHDPQGVFIRRWIPELKNIPDPWIGEPWNTPQL 472 Query: 449 -----KNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQ 480 + +YP P+VD A + +++ Sbjct: 473 IQQECGCIVGEDYPWPVVDPDTAISKARSNITEFRQR 509 >gi|321466446|gb|EFX77441.1| CRY-D [Daphnia pulex] Length = 525 Score = 290 bits (742), Expect = 4e-76, Method: Composition-based stats. Identities = 121/503 (24%), Positives = 196/503 (38%), Gaps = 38/503 (7%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 ++++W R LRI DN AL +A NS IA+F+ + F+ L + Sbjct: 1 MNVLWFRRGLRIHDNPALLSALENSKDF-IALFVFDTTFQDPGYKPYHMNGFLLECLHDL 59 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128 +SL G Q +E + + KL + + E RD + Sbjct: 60 NESLESVGTKLHVFQG----CPLEVFRHLHNIKPINKLCFIQDCEPIFHERDIAAKNLCS 115 Query: 129 H-RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIR---- 183 + L P I+ + + V + + P + Sbjct: 116 ELDIEVYEHVAHTLWDPMDIIASNGGTPPLTYE-MFVHVAMSVGDPPKPVADPEWKGVKF 174 Query: 184 LTGPVTPSNIPRFF------------DYPFQAIDPMFPIGEQNALHILRKFCKE-----K 226 LT SN F + P GE NAL + + Sbjct: 175 LTLEPFESNRFTLFGGVPTLSQIGVPENPVGCRGRRIFGGETNALKHFAIRLQAEETAFR 234 Query: 227 VYYYVEQRDIPAIQGTSQ-LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNEL 285 +Y + P + G LS +S+G +S R + R+ E F + ++ Sbjct: 235 SGFYQPNQARPDLLGPPLSLSAAISVGAISVRLFYWRIHEIFDKVNRGNPPAWLGITGQI 294 Query: 286 IWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNT 345 IWR+++ + P + P +I W ++ + WK G TG+P IDA MRQLN Sbjct: 295 IWRDYFYAMSRMNPKFDK-EVDNPICLQIPWVENEEFFEKWKNGQTGYPFIDAGMRQLNQ 353 Query: 346 IGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVP 404 GWMH+ +R A FL + DL ++W IG EY +QL+D D + N+G W W +S+ + + Sbjct: 354 EGWMHHSVRNAVAMFLTRGDLWLNWDIGAEYMANQLVDSDWSVNSGNWMWVSSSAFERLL 413 Query: 405 YFR-IFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWL------DKNDLSLNYP 457 N + GKR +P G +IR ++PEL N +YIH P + +YP Sbjct: 414 DCSVCINSVLYGKRLEPSGDYIRRYVPELANFEFEYIHEPWKAPIDIQRTANCIIGQDYP 473 Query: 458 LPIVDHKKACHHTLNQYYAAKKQ 480 +V H++ L +++ Sbjct: 474 AQMVVHEEVLPRNLEWMKEFRQK 496 >gi|51944883|gb|AAU14170.1| cryptochrome [Bactrocera tryoni] Length = 547 Score = 289 bits (741), Expect = 4e-76, Method: Composition-based stats. Identities = 119/518 (22%), Positives = 203/518 (39%), Gaps = 45/518 (8%) Query: 6 AMSVHLVWLRNDLRITDNKALYAACHNS--DAKVIAVFIATPEQWRQHGISARQSHFIYA 63 A +++W R+ LR+ DN AL A + +I +FI E + + F+ Sbjct: 2 AKRANVMWFRHGLRLHDNPALLEAISDKTEGIALIPLFIFDGESAGTKTVGYNRMSFLLN 61 Query: 64 SLLQVQKSLSQ-KGIVFQYHQCSNF-DDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDK 121 SL ++ K L +G + F + R+ K+ + + E RRD Sbjct: 62 SLAEIDKQLKAIRGASDIAGKLYLFQGNPTTVFRRLNEYYRLNKICFEQDCEPIWNRRDD 121 Query: 122 LLEKRLQH-RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVP 180 + + L P ++++ ++ + ++ ++ A R + P Sbjct: 122 SVRALCNDLDIEAVEKVSHTLWDPRTVISTNGRIPPLTYQMFLHTVE-IIGAPPRPVEDP 180 Query: 181 AIRLTGPV-----------------TPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFC 223 + TP + F D + GEQ AL L + Sbjct: 181 EWDGVEFLKLTDNMLMELNAFWQFPTPEDFNIFPDNISYVAKVKWRGGEQQALLHLAERL 240 Query: 224 KEKVYYYVEQRDIPA------IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPK-- 275 K + + +P ++ +S +L G LS R+ + + + F + I+ Sbjct: 241 KVEERAFKNGYYLPNQANPNILESPKSMSAHLRFGCLSVRRFYWSVHDLFKHVQIEAFYH 300 Query: 276 ----SGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEW-NKDSHLLQAWKQGY 330 +G +LIWRE++ + P + I W + LQ+W+ G Sbjct: 301 RIHMAGGEHITGQLIWREYFYTMSVNNPYYDRMEG-NEICLNIPWAPPNQEQLQSWRSGQ 359 Query: 331 TGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD-LLVDWRIGEEYFMSQLLDGDLASNN 389 TGFP+IDAAMRQL GW+H+ LR A+FL + L W G +F+ LLD D + Sbjct: 360 TGFPLIDAAMRQLLAEGWLHHTLRNTVATFLTRGALWQSWEHGLRHFLKYLLDADWSVCA 419 Query: 390 GGWQWAASTGNDSVPYFR-IFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLD 448 G W W +S+ + + + P KR DP+G +IR ++PEL +P +YIH P Sbjct: 420 GNWMWVSSSAFERLLDSSLVSCPIAFSKRLDPKGEYIRQYVPELAKIPQEYIHEPWRMPQ 479 Query: 449 KND------LSLNYPLPIVDHKKACHHTLNQYYAAKKQ 480 + + + YP IVD K ++ Sbjct: 480 EMQENYECVIGVQYPERIVDLAKVSKRNTLAXQTLRQS 517 >gi|298370358|ref|ZP_06981674.1| deoxyribodipyrimidine photolyase [Neisseria sp. oral taxon 014 str. F0314] gi|298281818|gb|EFI23307.1| deoxyribodipyrimidine photolyase [Neisseria sp. oral taxon 014 str. F0314] Length = 473 Score = 289 bits (741), Expect = 5e-76, Method: Composition-based stats. Identities = 139/475 (29%), Positives = 207/475 (43%), Gaps = 34/475 (7%) Query: 5 TAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYAS 64 T LVW R +LR+TDN AL AA V VF + RQ+ F+ AS Sbjct: 29 TMQKNTLVWFRRNLRLTDNAALAAAVRRG-LPVAGVF-------AADAANPRQAAFLRAS 80 Query: 65 LLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLE 124 ++ ++L+++GI Q + D + + + + +E RD + Sbjct: 81 AAELHRALAERGIPLFVAQEAETD-----IPRLAAELDAAVVVADEGCMADETARDNRIW 135 Query: 125 KRLQHRV-ICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIR 183 + L + + +D I++ + Y + P+R+A ++ Q P ++ Sbjct: 136 RVLDAQGRAFERVNDGAAFARAEIMDEHGRPYFEFAPYRQAWLRAFAQRFADRRPSESLP 195 Query: 184 LTGPVTPSNIPRFFDYPFQAIDPM-FPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGT 242 + +P F P A GE +F + + Y PA +GT Sbjct: 196 VGFQTAFGILPPFPALPETAPQEWRQQGGEAAGRRQWARFAAD-IGNYPLMSGFPAKKGT 254 Query: 243 SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVC 302 ++ YL+ G LSPR+ K GA WL+ L+ R+F+R +M P Sbjct: 255 GRVGAYLAAGCLSPREL----------AQAAAKRGAAQWLDNLVRRDFFRQVMFHRPEAA 304 Query: 303 MGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLV 362 + P I+W +L W+QG TGFP+IDAAMR LN GW+H LR A+FL Sbjct: 305 -AEALRPEYRGIKWPGGQDVLSRWQQGQTGFPLIDAAMRSLNATGWLHPALRAAAAAFLC 363 Query: 363 KDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQG 422 + LL DWR G +F L D D ASN G WQ A G + NP +Q ++ DP G Sbjct: 364 RILLADWRHGAAWFARCLTDYDPASNTGNWQEA--AGVFGLFSGGAANPVLQAQQLDPDG 421 Query: 423 TFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477 TFIR ++PEL ++P +HAP D + YP P+ D C Y A Sbjct: 422 TFIRRYVPELAHLPKDVVHAPWLARASVD-THGYPPPMAD----CARQGRAYAAL 471 >gi|147865945|emb|CAN80978.1| hypothetical protein VITISV_029095 [Vitis vinifera] Length = 633 Score = 289 bits (741), Expect = 6e-76, Method: Composition-based stats. Identities = 121/511 (23%), Positives = 186/511 (36%), Gaps = 91/511 (17%) Query: 2 KATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHG--------- 52 + + S L+W R LRI DN AL A S+ V VF+ P Sbjct: 146 PSMASGSGSLMWFRKGLRIHDNPALQHAAMESNC-VYPVFVIDPYFMEPDPNAFSPGSSR 204 Query: 53 ISARQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQY 112 + F+ SL+ + SL Q G + + I+ L Sbjct: 205 AGLNRIRFLLESLVDLDSSLRQLGSRLLVLKGDPGEVIIQCLKKNY-------------- 250 Query: 113 EINEVRRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQM----YKVYTPFRKALIQN 168 + S L I+ Y+ + Sbjct: 251 -------------ASAAGIEVFSPVSHTLFDSADIIQKNGGRPPLSYQSFLKLAGQPSWA 297 Query: 169 LVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPM----FPIGEQNALHILRKFCK 224 +P + G SN+P + ++ I F GE AL LR+ + Sbjct: 298 SSPLSTTLSWLPPVGDVGTCEISNVPTVKELGYEEIGQDELTPFKGGESEALKRLRESIR 357 Query: 225 EKVY--YYVEQRDIPAI---QGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAF 279 +K + + + + P+ T+ LSPYL G LS R + L + + ++ + S Sbjct: 358 DKDWVANFEKPKGDPSAFLKPATTVLSPYLKFGCLSSRYFYQCLTDVYKNVK-RHTSPPV 416 Query: 280 SWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAA 339 S + +L+WR+F+ + P+ K ++I WN D LL AW++ TG+P IDA Sbjct: 417 SLVGQLLWRDFFYTVGFGTPNFDRMKGNR-ICKQIPWNDDDELLAAWREARTGYPWIDAI 475 Query: 340 MRQLNTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAAST 398 M QL GWMH+ R A FL + DL V W G + F L+D D A NNG W W + + Sbjct: 476 MVQLRKWGWMHHLARHCVACFLTRGDLFVHWEKGRDVFERLLIDSDWAINNGNWLWLSCS 535 Query: 399 GNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWL------DKNDL 452 P ++P +YI+ P + K + Sbjct: 536 SFFYQP-----------------------------DMPKEYIYEPWTAPPSIQXKAKCII 566 Query: 453 SLNYPLPIVDHKKA---CHHTLNQYYAAKKQ 480 +YP P+V H A C L + YA K+ Sbjct: 567 GKDYPKPVVCHDSAXKECKRKLAEAYALNKR 597 >gi|284506737|dbj|BAI67362.1| cryptochrome [Bactrocera cucurbitae] Length = 547 Score = 289 bits (740), Expect = 6e-76, Method: Composition-based stats. Identities = 117/514 (22%), Positives = 200/514 (38%), Gaps = 45/514 (8%) Query: 10 HLVWLRNDLRITDNKALYAAC--HNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67 +++W R+ LR+ DN AL A + +I +FI E + + F+ SL Sbjct: 6 NVLWFRHGLRLHDNPALLEAISDKSEGIALIPLFIFDGESAGTKTVGYNRMSFLLNSLAD 65 Query: 68 VQKSLSQ-KGIVFQYHQCSNF-DDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125 + K L +G + F + R+ K+ + + E RRD + Sbjct: 66 IDKQLKAIRGASDISGKLYLFQGNPATVFRRLSEYYRLNKICFEQDCEPIWNRRDDSVRS 125 Query: 126 RLQH-RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL 184 + L P ++++ + + ++ ++ R + P Sbjct: 126 LCNDLDIEAVEKVSHTLWDPRTVISTNGGIPPLTYQMFLHTVE-IIGVPPRPVEDPDWDG 184 Query: 185 TGPVTPSNIPRFFDYPFQAIDP-----------------MFPIGEQNALHILRKFCKEKV 227 + ++ F + GEQ AL L + K + Sbjct: 185 VEFLKLTDNMLMELNAFWRFPTPEDFNVYPDNVSYVAKVKWHGGEQQALLHLDERLKVEE 244 Query: 228 YYYVEQRDIPA------IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIK------PK 275 + +P ++ +S +L G LS R+ + R+ + F + I+ Sbjct: 245 RAFKNGYYLPNQANPNILESPKSMSAHLRFGCLSVRRFYWRVHDLFKHVQIEALRQRVHM 304 Query: 276 SGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWN-KDSHLLQAWKQGYTGFP 334 +G +LIWRE++ + P + I W + LQ+W+ G TGFP Sbjct: 305 AGGEHITGQLIWREYFYTMSVNNPYYDRMEG-NAICLNIPWAAPNKEQLQSWRSGQTGFP 363 Query: 335 IIDAAMRQLNTIGWMHNRLRMITASFLVKD-LLVDWRIGEEYFMSQLLDGDLASNNGGWQ 393 +IDAAMRQL GW+H+ LR A+FL + L W G F+ LLD D + G W Sbjct: 364 LIDAAMRQLLAEGWLHHTLRNTVATFLTRXALWQSWEHGLRXFLXYLLDADWSVCAGNWM 423 Query: 394 WAASTGNDSVPYFR-IFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLD---- 448 W +S+ + + + P KR DP+G +IR ++PEL NVP +YIH P Sbjct: 424 WVSSSAFERLLDSSLVSCPIAFSKRLDPKGEYIRXYVPELANVPQEYIHEPWRMPQELQE 483 Query: 449 --KNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQ 480 + + + YP IVD K ++ ++ Sbjct: 484 NCECVIGVQYPERIVDLAKVSKRNVHAMQTLRQS 517 >gi|124003106|ref|ZP_01687957.1| deoxyribodipyrimidine photolyase [Microscilla marina ATCC 23134] gi|123991756|gb|EAY31164.1| deoxyribodipyrimidine photolyase [Microscilla marina ATCC 23134] Length = 545 Score = 289 bits (740), Expect = 7e-76, Method: Composition-based stats. Identities = 111/487 (22%), Positives = 200/487 (41%), Gaps = 28/487 (5%) Query: 4 TTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYA 63 T+M +++VW + DLR+ D+ L AA V+ V++ P + + R F+Y Sbjct: 34 DTSM-INVVWFKRDLRLEDHAPLKAAIE-VGLPVLLVYVFEPSLQQSPDWNIRHWQFVYQ 91 Query: 64 SLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVR-RDKL 122 S+ + L + + + + ++ K+F +++ I RD+ Sbjct: 92 SIEDLNFELEDYQVKLHCFHA----EVPDVFEYILKTHQIDKVFSHQETGIRLTYDRDRQ 147 Query: 123 LEKRLQHR-VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPA 181 +++ + + + + F+ + + + + + F K + A L+++P Sbjct: 148 MQQFFEQKDIEWQEFEQNGIQR---GRKNRRGWAQDWQIFMKEPLATPNLAQLKAMPYEV 204 Query: 182 IRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAI-- 239 + Y P+G ++A L+ F K+ + Y Q PA+ Sbjct: 205 TDFAFLFDYVTGQKIHLY----SKNYQPVGMRSAQKYLKAFGKKCIVQYTTQHKQPALSN 260 Query: 240 QGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYP 299 Q S LSPYL+ G LS RQ + ++ +D + ++L+ L Sbjct: 261 QSNSHLSPYLAWGNLSVRQVYQHCQQLMIDSPHRAN--FETYLHHLRMHCQCIQKFE-ME 317 Query: 300 SVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITAS 359 + ++E N + LL+AWK G TGFP++DA+MR + G+++ ++R + S Sbjct: 318 DYLEFEAGNEAYLQLEQNHKNDLLEAWKNGQTGFPLVDASMRCIRQTGYLNFQMRSLIVS 377 Query: 360 FLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFD 419 FL L W G Y Q LD + + +Q A + +I NP K+ D Sbjct: 378 FLTHHLWQSWHTGVHYLGQQFLDYEPGVHFVRFQAQAGAVDTHK--VKILNPIKVSKKCD 435 Query: 420 PQGTFIRHWLPELNNVPTQYIHAPHSWLD------KNDLSLNYPLPIVDHKKACHHTLNQ 473 P+ FI+ W+PEL N+P IH K + +YP PI++ H Sbjct: 436 PKAQFIKKWVPELKNIPAGLIHDLSKMTTIEQIFYKCTIGQDYPAPIININATHPHAKAA 495 Query: 474 YYAAKKQ 480 A KK Sbjct: 496 LEALKKN 502 >gi|297563254|ref|YP_003682228.1| deoxyribodipyrimidine photo-lyase [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] gi|296847702|gb|ADH69722.1| Deoxyribodipyrimidine photo-lyase [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] Length = 435 Score = 289 bits (740), Expect = 7e-76, Method: Composition-based stats. Identities = 136/457 (29%), Positives = 214/457 (46%), Gaps = 29/457 (6%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 S +V DLR+ D+ AL AA + VF+ P + ++ + +L Sbjct: 2 ASATIVLFTQDLRVHDHPALAAAVER-PGPTLPVFVLDPAVAGR--SVRNRAALLADALA 58 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 ++ +L ++G + D++ + + + RR + Sbjct: 59 DLRAALRERGADLVLLRG----DTVREVAALARASGADTVHVTDGVSSLAARRARR---L 111 Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 + ++F ++PPG + YKV+TP+ KA + + P + L Sbjct: 112 RATGLTVRAFPGLTVVPPGEVTPAGGDHYKVFTPYWKAWEAAAWRDPV--APPDRVVLPE 169 Query: 187 PVTPSNIPRFFDYPFQAIDPMFP-IGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245 V P +P A+ P GE+ A L + + Y ++ D TS L Sbjct: 170 GVRPGELPGRGTDGLGALAEDLPRGGERAARERLDAWLSSGLAAYPDRHDDLPGAATSHL 229 Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305 S L +G LSP + L P +G +++ +L WR+F+ + A +P+V + + Sbjct: 230 SADLRLGCLSPLE---------AALAASPLAGGEAFVRQLAWRDFHHQVTAAFPAVNV-R 279 Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365 + P K W +D L AWK+G TG P++DA MRQL G++HNR RMITA+FL + L Sbjct: 280 DYRPRDRK--WREDPDALDAWKRGRTGVPVVDAGMRQLLREGFVHNRARMITAAFLTRTL 337 Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425 V WR G ++F + L+DGD+A+N G WQW A TGND+ P R FNP Q +RFDP+G ++ Sbjct: 338 RVHWREGADHFHAHLVDGDVANNYGNWQWVAGTGNDTRP-NRAFNPLRQARRFDPEGVYV 396 Query: 426 RHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVD 462 R +LPEL ++P H P + YP PI D Sbjct: 397 RRYLPELADLPGGRAHTPWR---EEHPPPGYPAPIAD 430 >gi|109896483|ref|YP_659738.1| deoxyribodipyrimidine photolyase [Pseudoalteromonas atlantica T6c] gi|109698764|gb|ABG38684.1| deoxyribodipyrimidine photo-lyase (single-stranded DNA-specific) [Pseudoalteromonas atlantica T6c] Length = 445 Score = 289 bits (740), Expect = 7e-76, Method: Composition-based stats. Identities = 117/438 (26%), Positives = 195/438 (44%), Gaps = 23/438 (5%) Query: 1 MKATTAM--SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQW-----RQHGI 53 MK ++ + W R+DLR+ DN AL A D +++ VFI P + + + Sbjct: 1 MKKLSSALPKRGIFWFRHDLRLHDNPALVALSEQVD-ELLCVFIIDPRWFKSSHFQSAHM 59 Query: 54 SARQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYE 113 ++ F+ SL ++Q+ L ++G + +E LD+ + Sbjct: 60 GDKRWAFLQQSLSELQRHLQEQGQQLFVLEGET----LEVLDALIGSYTPDIVASGMHPG 115 Query: 114 INEVRRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQAD 173 + E ++ + +++ + + + + L P ++ + +TPFRK + V Sbjct: 116 VYERQQWQRVKQGNPNTLFIQE-NGHSLFQPATLPFEIEYLPASFTPFRKRVEDLQVAVA 174 Query: 174 LRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRK--FCKEKVYYYV 231 L + S P +AI F GE AL L F + Y Sbjct: 175 LPAPTALPPAPDLAWLSSKNVN---PPKKAIGLAFTGGEDAALAQLEYTLFTSHNIKNYK 231 Query: 232 EQRD-IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREF 290 + R+ + +S+LSP+L+ G LS RQ + L+ + + + EL+WRE+ Sbjct: 232 QTRNGLDGWDYSSKLSPWLANGCLSVRQVFTELRRY--ESEYEKNDSTYWLYFELLWREY 289 Query: 291 YRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMH 350 ++ + Y S T + + W QG T +PI++A M+QLN G+M Sbjct: 290 FQWHLFKYQSKLFQFSGTQDTRPLTTFV-ALRFAMWCQGETPYPIVNACMKQLNHTGYMS 348 Query: 351 NRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFN 410 NR R + AS LV +L VDWR G YF QL+D D+ASN G WQ+ + G D + R F+ Sbjct: 349 NRGRQLVASCLVNELGVDWRFGAAYFEQQLVDFDVASNWGNWQYLSGVGVDPRGHRR-FD 407 Query: 411 PTIQGKRFDPQGTFIRHW 428 Q +++DP G F+R W Sbjct: 408 LAKQAQQYDPNGEFVRQW 425 >gi|294339498|emb|CAZ87857.1| putative Deoxyribodipyrimidine photo-lyase [Thiomonas sp. 3As] Length = 493 Score = 289 bits (739), Expect = 7e-76, Method: Composition-based stats. Identities = 112/483 (23%), Positives = 182/483 (37%), Gaps = 47/483 (9%) Query: 8 SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67 ++ LVW + DLR+ D+ AL+A +A+F+ PE A+ F + Sbjct: 3 TLALVWFKRDLRVQDHAALHA--AAQCDAALALFVMEPEWIASPECDAQHVQFAADCVSA 60 Query: 68 VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEI-NEVRRDKLLEKR 126 +Q+SL+ G+ D + + + R T LF + + RDK + Sbjct: 61 LQESLAGLGLRLLVR----VGDVPQVFEDIRREVRFTHLFSHEETGPGWTYARDKRVAHW 116 Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 + + + P ++ + Q + A +P + Sbjct: 117 CREQGVIWQEW-----PQNGVVRRLRDRAGWAARW-----QRRMDAPQLPVPQALRDASK 166 Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIP--AIQGTSQ 244 P+ + P D A PM G AL L F + Y P A +G S+ Sbjct: 167 PLAAGDFPALRDLRLPAARPMSAAGTAAALSTLHSFLDTRGAQYRRDLSSPLTAERGCSR 226 Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFS-------WLNELIWREFYRHLMAF 297 LS +L+ G LS RQ ++ L ++ A S + L W + + Sbjct: 227 LSAHLAFGTLSMRQVHQATEQRIRALQASGEAPARSMAYHLRGFAGRLRWHCHFMQKLED 286 Query: 298 YPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMIT 357 P + + E + +AW G TGFP++DA MR LN GW++ R+R + Sbjct: 287 EPGIEFHNFARAYDGLREPEFNPAYFEAWCSGNTGFPMVDACMRCLNATGWINFRMRAML 346 Query: 358 ASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKR 417 SF L + WR + Q LD + + Q +G + R+++P Q Sbjct: 347 VSFAAYHLWLHWREPGLHLARQFLDFEPGIHWS--QMQMQSGTTGINTLRVYSPAKQQAD 404 Query: 418 FDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477 DPQG FIR W+PE W YP PIV+ + A ++ YA Sbjct: 405 HDPQGEFIRQWVPE--------------WGTSA-----YPPPIVNERSAVKQAKDRIYAI 445 Query: 478 KKQ 480 ++ Sbjct: 446 RQS 448 >gi|119490469|ref|ZP_01622930.1| deoxyribodipyrimidine photolyase [Lyngbya sp. PCC 8106] gi|119453940|gb|EAW35095.1| deoxyribodipyrimidine photolyase [Lyngbya sp. PCC 8106] Length = 512 Score = 289 bits (739), Expect = 8e-76, Method: Composition-based stats. Identities = 126/487 (25%), Positives = 212/487 (43%), Gaps = 32/487 (6%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 + ++W R DLR+ DN + A D +++ FI P ++Q I + F++ SL + Sbjct: 1 MQILWFRRDLRLIDNDIVAQAAAT-DEEILPCFIIDPWFYQQPDIGGMRVQFLFESLACL 59 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVT-KLFYNRQYEI-NEVRRDKLLEKR 126 SL G + ++ + I+ L L+ +L +NR ++ +RD + + Sbjct: 60 DGSLRDLGSRLYLFEGNSVEV-IQTLTGELLELGYHPRLVFNRDIQVDYGRKRDHQVIEF 118 Query: 127 LQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185 Q + C ++ L G + + L Q + Sbjct: 119 YQRLGLNCYLGLNNFLQIEGE------NREQWMNEYYADLRQPQHPIPTKLKTPEIPLNL 172 Query: 186 GPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ---GT 242 +T + + +++ Q +F GE A L + K + Y + P I GT Sbjct: 173 TQLTFDELQQKYNFNSQNS-ALFTGGEVEAQKTLNSWLKSRYNGYHWKLSRPQIATLGGT 231 Query: 243 SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKS--GAFSWLNELIWREFYRHLMAFYPS 300 S LS +L+ G +S RQ + + K +L K+ S+ N L WR+ + ++P Sbjct: 232 SHLSAHLAFGTISTRQVYQQTKARANELKENAKAQFALKSFRNCLRWRDSAIQRLYYFPE 291 Query: 301 VCMGKPFIPWTEKIEWNKDSHL-------LQAWKQGYTGFPIIDAAMRQLNTIGWMHNRL 353 + + P +K W D L QAW+QG TGFP++DA+M+QL ++GWM+ R+ Sbjct: 292 LAYQNCY-PEFDK--WYSDGELEGEKLEYFQAWQQGKTGFPLVDASMKQLQSMGWMNFRM 348 Query: 354 RMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTI 413 R + A+FL V W G ++M+ L+DGD+A N+ WQ A N FRI+NPT Sbjct: 349 RAMCANFLTVICGVSWHHGARHYMNYLVDGDIAINHWQWQAQAGVTNPLSSTFRIYNPTK 408 Query: 414 QGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQ 473 DP+ F+R W+PEL + + I + YP P++D + Sbjct: 409 NLTEKDPKFEFVRDWIPELRDCTDEQI-----LSGEIGELSGYPEPMLDWYEMRKINGKV 463 Query: 474 YYAAKKQ 480 +KQ Sbjct: 464 VSELRKQ 470 >gi|284506739|dbj|BAI67363.1| cryptochrome [Bactrocera cucurbitae] Length = 547 Score = 288 bits (738), Expect = 1e-75, Method: Composition-based stats. Identities = 114/514 (22%), Positives = 197/514 (38%), Gaps = 45/514 (8%) Query: 10 HLVWLRNDLRITDNKALYAAC--HNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67 +++W + LR+ DN AL A + +I +FI E + + F+ SL Sbjct: 6 NVLWFXHGLRLHDNPALLEAISDKSEGIALIPLFIFDGESAGTKTVGYNRMSFLLNSLAD 65 Query: 68 VQKSLSQ-KGIVFQYHQCSNF-DDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125 + K L +G + F + R+ K+ + + E RRD + Sbjct: 66 IDKQLKAIRGASDISGKLYLFQGNPATVFRRLSEYYRLNKICFEQDCEPIWNRRDDSVRS 125 Query: 126 RLQH-RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL 184 + L P ++++ + + ++ ++ R + P Sbjct: 126 LCNDLDIEAVEKVSHTLWDPRTVISTNGGIPPLTYQMFLHTVE-IIGVPPRPVEDPDWDG 184 Query: 185 TGPVTPSNIPRFFDYPFQAIDP-----------------MFPIGEQNALHILRKFCKEKV 227 + ++ F + GEQ AL L + K + Sbjct: 185 VEFLKLTDNMLMELNAFWRFPTPEDFNVYPDNVSYVAKVKWHGGEQQALLHLDERLKVEE 244 Query: 228 YYYVEQRDIPA------IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIK------PK 275 + +P ++ +S +L G LS R+ + + + F + I+ Sbjct: 245 RAFKNGYYLPNQANPNILESPKSMSAHLRFGCLSVRRFYWSVHDLFKHVQIEALRQRVHM 304 Query: 276 SGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWN-KDSHLLQAWKQGYTGFP 334 +G +LIWRE++ + P + I W + LQ+W+ G TGFP Sbjct: 305 AGGEHITGQLIWREYFYTMSVNNPYYDRMEG-NAICLNIPWAAPNKEQLQSWRSGQTGFP 363 Query: 335 IIDAAMRQLNTIGWMHNRLRMITASFLVKD-LLVDWRIGEEYFMSQLLDGDLASNNGGWQ 393 +IDAAMRQL GW+H+ LR A+FL + L W G +F+ LLD D + G W Sbjct: 364 LIDAAMRQLLAEGWLHHTLRNTVATFLTRGALWQSWEHGLRHFLKYLLDADWSVCAGNWM 423 Query: 394 WAASTGNDSVPYFR-IFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLD---- 448 W +S+ + + + P KR DP+G +IR ++PEL NVP +YIH P Sbjct: 424 WVSSSAFERLLDSSLVSCPIAFSKRLDPKGEYIRQYVPELANVPQEYIHEPWRMPQELQE 483 Query: 449 --KNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQ 480 + + + YP IVD + ++ Sbjct: 484 NCECVIGVQYPERIVDLANVSKRNVXAMQTLRQS 517 >gi|312883173|ref|ZP_07742904.1| deoxyribodipyrimidine photolyase [Vibrio caribbenthicus ATCC BAA-2122] gi|309369333|gb|EFP96854.1| deoxyribodipyrimidine photolyase [Vibrio caribbenthicus ATCC BAA-2122] Length = 487 Score = 288 bits (738), Expect = 1e-75, Method: Composition-based stats. Identities = 120/489 (24%), Positives = 201/489 (41%), Gaps = 36/489 (7%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 ++L+WL+ DLR+TD++ALYAA + +I ++ P S R F+Y SL+ Sbjct: 2 KKINLLWLKRDLRLTDHEALYAATQSGRPTLIF-YLFEPFLLDNPHYSERHWRFVYQSLV 60 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEV-RRDKLLEK 125 + + L F L++ C V L+ ++ + RD + + Sbjct: 61 DMNRRLEPLNRSITIATTDIFHF----LEAVCSTYDVEMLYSYQEIGLKVTFNRDLEVAQ 116 Query: 126 RLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRS---LPVPAI 182 + I P G+++ A K + K + L L+ LP Sbjct: 117 YCKQHTIAWQE-----FPTGAVIRGARSRDKWDKNWAKTMRSPLATVHLKKEHLLPYSEK 171 Query: 183 RLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIP--AIQ 240 L+ P N R Q G A L F + + Y + P + + Sbjct: 172 TLSLPCHIPNAWRSKTQGMQT------GGSDLAWKTLDDFFERRGKNYYKSLSSPTLSRK 225 Query: 241 GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPS 300 S+LSPYL+ G +S R+ + R+ E + + A S + L W + Sbjct: 226 ACSRLSPYLAWGNISLREVYQRVLEHWNTKGFRRSLTALS--SRLHWHCHFIQKFESECD 283 Query: 301 V---CMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMIT 357 + C+ + + P + + LQAWK G TG P++DA MR L+ G+++ R+R + Sbjct: 284 MEFRCLNRAYEPLLSSSS-STEFDKLQAWKSGQTGVPLVDACMRCLHHTGYINFRMRAML 342 Query: 358 ASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKR 417 SFL + DWR G E+ S LD + + +Q G + RI+NP Q + Sbjct: 343 VSFLTHHMGFDWRYGVEHLASLFLDFEPGIHYAQFQMQ--AGVTGINTIRIYNPIKQAQE 400 Query: 418 FDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLN------YPLPIVDHKKACHHTL 471 DP G FI W+PEL +P +++P + + Y PI+D + A Sbjct: 401 HDPDGQFILRWVPELKGIPIPLLYSPSQITPMEAVLYDLDSESVYLNPIIDIEHAGRLAR 460 Query: 472 NQYYAAKKQ 480 ++ + KK+ Sbjct: 461 DRLWTWKKR 469 >gi|159487721|ref|XP_001701871.1| cryptochrome DASH1 [Chlamydomonas reinhardtii] gi|158281090|gb|EDP06846.1| cryptochrome DASH1 [Chlamydomonas reinhardtii] Length = 469 Score = 288 bits (738), Expect = 1e-75, Method: Composition-based stats. Identities = 113/484 (23%), Positives = 193/484 (39%), Gaps = 39/484 (8%) Query: 1 MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDA----KVIAVFIATPEQ-----WRQH 51 M ++W RNDLR+ DN ++ A +V+ V++ P W Sbjct: 1 MATAGGGQRLVLWFRNDLRLHDNYIVHEAAQRVKRGEASEVLPVYVYDPRFFAATPWGAL 60 Query: 52 GISARQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTK-LFYNR 110 A ++ FI + +++ L G + L + + Sbjct: 61 KTGAHRAKFIQECVADLRQRLQGLGSDLVV----AVGQPEQLLPALLEGGGAAPLVLTAE 116 Query: 111 QYEINEVRRDKLLEKRLQ-HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNL 169 + E D + + ++ + + + + V+TPF++ + + Sbjct: 117 EVTSEEAAVDVAVARAIKPAGGKLLRYWGHTMYHYDDL-----DLPDVFTPFKEKVEKRA 171 Query: 170 VQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPM----FPIGEQNALHILRKFCKE 225 + + A P P F GE AL L+ + + Sbjct: 172 ALPLPPAPRLGATAAAALAAPLPGWEQLPPAPPVTHPKAVLDFKGGETAALARLKYYLWD 231 Query: 226 KV--YYYVEQRD-IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWL 282 Y + R+ + +++ +P+L+ G +SPR+ ++ +++ + + Sbjct: 232 SDLLSTYFDTRNGMLGGDYSTKFAPWLAQGCISPRKIFHEIRKYESQRF--SNKSTYWVI 289 Query: 283 NELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQ 342 ELIWR+F+R + + + + WN D L W++G TG P++DA MR+ Sbjct: 290 FELIWRDFFRFFALKHGNRIFFETGTSGL-PLVWNPDPELWARWREGRTGLPLVDANMRE 348 Query: 343 LNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDS 402 L G+M NR R AS+LV DL VDWR G +YF LLD D+ SN G W AA Sbjct: 349 LAATGFMSNRGRQNVASYLVLDLGVDWRRGADYFEEVLLDYDVTSNWGNWVAAAGLTGGR 408 Query: 403 VPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND------LSLNY 456 V + FN Q K +DP G +++ W PEL NVP +H P + + ++Y Sbjct: 409 VNH---FNIAKQSKDYDPTGEYVKTWCPELKNVPVTKVHEPWLMSKEEQERSGCRIGVDY 465 Query: 457 PLPI 460 P PI Sbjct: 466 PNPI 469 >gi|323499198|ref|ZP_08104176.1| deoxyribodipyrimidine photolyase [Vibrio sinaloensis DSM 21326] gi|323315831|gb|EGA68864.1| deoxyribodipyrimidine photolyase [Vibrio sinaloensis DSM 21326] Length = 488 Score = 288 bits (737), Expect = 1e-75, Method: Composition-based stats. Identities = 108/484 (22%), Positives = 197/484 (40%), Gaps = 32/484 (6%) Query: 8 SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67 S+++VWL+ DLR+TD++ L A D VI +++ P S R F+ SL+ Sbjct: 3 SINIVWLKRDLRLTDHQPLQHALEQ-DLPVILLYVFEPLLLNDPHYSERHWRFVSHSLVD 61 Query: 68 VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEIN-EVRRDKLLEKR 126 + + L+ G + + + + + ++ +++ ++ +RDK + Sbjct: 62 MNQQLAPYGGKVSILRG----EILSCFKAIQSLYSIANIYSHQEIGLSCTYQRDKQVAHW 117 Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 Q I P G+++ A + + +++A + L + A LT Sbjct: 118 TQAHNIPWIES-----PQGAVIRGAKNRKEWDKHW-----DRIMRAPIAHLDLNANWLTL 167 Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ--GTSQ 244 + + G A L F + + Y P+ ++ Sbjct: 168 EHLKDYTLTLPKHWLKKAKGQQTGGTTLAWKTLDDFFQRRGKEYYRSISSPSASRYACTR 227 Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSV--- 301 LSPYL+ G +S R+ + +L + + + + L W + ++ Sbjct: 228 LSPYLAWGNISLRELYQQLLGHWQVKGFR--RSLVALSSRLHWHCHFIQKFESESAMEYR 285 Query: 302 CMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFL 361 C+ + + + D L AWKQG TG P+IDA MR L+ G+++ R+R + SFL Sbjct: 286 CVNQAYDALLSQ-SCLSDRDKLNAWKQGQTGIPLIDACMRCLHHTGYINFRMRAMLVSFL 344 Query: 362 VKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQ 421 + +DWR G + LD + + +Q G RI+NPT Q + D + Sbjct: 345 THHMNMDWREGVTHLAQLFLDFEPGIHYPQFQMQ--AGVTGTNTIRIYNPTKQAQEHDSE 402 Query: 422 GTFIRHWLPELNNVPTQYIHAPHSWLDKN----DLSLN--YPLPIVDHKKACHHTLNQYY 475 G FI+ WLPEL +VPT + P + L+ Y PI+D ++ + Sbjct: 403 GVFIKQWLPELKHVPTPLLFEPWKMTQMEAVMYQIELDSCYLSPIIDLATRAKEARDRLW 462 Query: 476 AAKK 479 + +K Sbjct: 463 SWRK 466 >gi|301097563|ref|XP_002897876.1| cryptochrome, putative [Phytophthora infestans T30-4] gi|262106624|gb|EEY64676.1| cryptochrome, putative [Phytophthora infestans T30-4] Length = 656 Score = 288 bits (737), Expect = 1e-75, Method: Composition-based stats. Identities = 140/535 (26%), Positives = 220/535 (41%), Gaps = 75/535 (14%) Query: 11 LVWLRNDLRITDNKALYAAC---HNSDAKV-------IAVFIATPEQWRQHGISARQSHF 60 LVW R DLR+ DN A+ AA + K+ I ++I + + + F Sbjct: 92 LVWFRRDLRLHDNLAISAALDWIKQEEEKIPGRKVVFIPLYIV--HRPKIMLCGVNRFQF 149 Query: 61 IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120 + S+ + +L+ +G + D ++ L R++ LF++ E + RD Sbjct: 150 LLESVSDLADALAARGSRLVVARG----DGVQVLRRLLPAWRISHLFFDAASEPFAIDRD 205 Query: 121 -KLLEKRLQHRVICKSFDDSVLLPPGSILNHA-LQMYKVYTPFRKALIQNLVQA------ 172 + + Q V L +++ + K YT F +AL Sbjct: 206 NRAVALARQLGVETHVTHGYTLYDLDAVIAGNNGEPPKTYTAFLRALAMQPKPPKPLPTP 265 Query: 173 ------------------DLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAID--PMFPIGE 212 D + + GP +P D+ F A + P GE Sbjct: 266 EKVPAPVYLPSELYQQVIDYWQNRLKPDSIAGPEQQFTLPEVTDFGFVAPERHPFIYGGE 325 Query: 213 QNALHILRKFCKE--KVYYYVEQRDIPAI----QGTSQLSPYLSIGVLSPRQCWNRLKEE 266 Q AL ILR +C+ +V + + + PA T+ LSPYL G +SPR + ++ Sbjct: 326 QIALGILRDYCRNEGRVVKFEKPKTSPAQTTPSASTTSLSPYLYFGSISPRTFLHHVRGI 385 Query: 267 FVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWN--------- 317 + S +L+WREF+ + P +I+W Sbjct: 386 QEHHAKALSATPVSLDGQLLWREFFHCHGRANAYFDKMEE-SPTCLQIDWRWHTIPEREE 444 Query: 318 ---KDSHL----LQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK-DLLVDW 369 D L QAW G TGFP IDA M QL GWMH+ R A FL + DL + W Sbjct: 445 DMTDDDKLARSQFQAWIDGQTGFPWIDAIMIQLKEEGWMHHLARHSVACFLTRGDLYISW 504 Query: 370 RIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWL 429 G E F +L+D D + N G W W +++ S YFR+++P+ GK++DP+G FIR ++ Sbjct: 505 VRGLEVFQERLIDHDWSINCGNWLWLSASYFFSA-YFRVYSPSTFGKKWDPEGLFIRKYV 563 Query: 430 PELNNVPTQYIHAPHS------WLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478 P L+ +P +YI+ P + +YP PIVDHK A ++ + Sbjct: 564 PALSKMPVKYIYEPWKAPMTVQHAAGCLIGKDYPFPIVDHKIAMRRSMAGMKKSY 618 >gi|110637463|ref|YP_677670.1| deoxyribodipyrimidine photo-lyase type I [Cytophaga hutchinsonii ATCC 33406] gi|110280144|gb|ABG58330.1| deoxyribodipyrimidine photo-lyase (single-stranded DNA-specific) [Cytophaga hutchinsonii ATCC 33406] Length = 434 Score = 288 bits (737), Expect = 1e-75, Method: Composition-based stats. Identities = 115/439 (26%), Positives = 188/439 (42%), Gaps = 27/439 (6%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGIS-----ARQSHFI 61 M +VW + DLR+ DN+ L A SD ++I V+ + ++ ++ F+ Sbjct: 1 MKRSIVWFKTDLRLHDNETLVRAIEQSD-EIIPVYCLDEDHFKITPFGFQKTGNFRAQFL 59 Query: 62 YASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDK 121 SL + +L + G + + L Q K+F R+ E + + Sbjct: 60 LESLNDLDTNLRKLGSGLIVVRGKPETE----LYKIVKQYEAFKVFAKREVAYEEQQTEA 115 Query: 122 LLEKRLQHRV-ICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVP 180 +EK + +SF S L + + +V+T FRK + + ++ +RS+ Sbjct: 116 RVEKEIWKLGCTFESFSTSTLYHAQDLPFSIKDIPEVFTNFRKKVEK---ESSIRSVFQK 172 Query: 181 AIRLTGPVTPS-NIPRFFDYPFQAIDP------MFPIGEQNALHILRKFCKEKV--YYYV 231 + P P +P Q + F GE L + E +Y Sbjct: 173 PAHIKSPAMPQLRLPTVKGLGLQPVIQDPRAVMKFTGGESEGCKRLTSYLFETQLISHYK 232 Query: 232 EQRD-IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREF 290 RD + +++ SP+L++G LSPR+ + LK+ + + + EL+WR++ Sbjct: 233 NTRDGMIGSDYSTKFSPWLALGCLSPREIYTELKKY--ESRFSANESTYWLIFELLWRDY 290 Query: 291 YRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMH 350 +R +M + I + +D+ +L W G TG IDA M +L G+M Sbjct: 291 FRFMMKKHKHQFFLYSGIKDSANASGLQDTAILSQWINGKTGNDFIDANMLELTHTGFMS 350 Query: 351 NRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFN 410 NR R AS+L DL +DWR G YF QL+D D+ SN G W + A GND R FN Sbjct: 351 NRGRQNAASYLCNDLGIDWRYGAAYFEQQLIDYDVCSNWGNWAYLAGVGNDPRGK-RNFN 409 Query: 411 PTIQGKRFDPQGTFIRHWL 429 Q + +DP+ F WL Sbjct: 410 IEKQAEEYDPKKLFRNLWL 428 >gi|255020504|ref|ZP_05292568.1| Deoxyribodipyrimidine photolyase [Acidithiobacillus caldus ATCC 51756] gi|254970024|gb|EET27522.1| Deoxyribodipyrimidine photolyase [Acidithiobacillus caldus ATCC 51756] Length = 493 Score = 288 bits (737), Expect = 1e-75, Method: Composition-based stats. Identities = 111/481 (23%), Positives = 184/481 (38%), Gaps = 47/481 (9%) Query: 10 HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69 LVW + DLR TD+ L AA A + +++ E + FI SLL+++ Sbjct: 5 ALVWFKRDLRCTDHAPLAAAARCRSA--VGLYVLEDEWLGAPEWDPQHWEFIRQSLLELR 62 Query: 70 KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVR-RDKLLEKRLQ 128 +L+ +G+ + + L T+L + + RD+ + + Sbjct: 63 DNLAARGMPLLLRRGA----MPLVLAQLWRDYPFTELLSHEETGSAWTYARDRRVAAWCR 118 Query: 129 HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188 R I P ++ Q + + + + T P+ Sbjct: 119 ERGIAWRQW-----PQFGVVRPLAQRDGWAEAW-----ERFMARPPLAAVGQLPGTTTPL 168 Query: 189 TPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIP--AIQGTSQLS 246 +IP A P+ P GE A L F E+ Y+ P A +G S+LS Sbjct: 169 DGGDIPSLDALGLPAARPIPPAGEAAATRTLESFIAERGSRYLHTLSSPLLAERGCSRLS 228 Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGA-------FSWLNELIWREFYRHLMAFYP 299 +L+ G +S RQ R ++ +L + + A +L+ L W + + P Sbjct: 229 AHLAYGTVSMRQVVQRTRQRLRELRKEGSAEAGERARHLRGFLSRLHWHCHFIQKLEDEP 288 Query: 300 SVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITAS 359 + + E + AW +G TGFP +DA MR L GW++ R+R + S Sbjct: 289 ASEFHNFSRSYDGLREDDWSEERFLAWAEGRTGFPFVDACMRCLRATGWINFRMRAMLVS 348 Query: 360 FLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFD 419 F L + WR + Q LD + + Q +G + RI++P Q D Sbjct: 349 FASYHLWLHWRGTGLFLARQFLDFEPGIHWS--QMQMQSGTTGINTLRIYSPNKQWADQD 406 Query: 420 PQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479 P+G F+R WLPE S +YP PIVD ++A + +A ++ Sbjct: 407 PRGEFVRRWLPEWG-------------------SPDYPPPIVDEQRAARIAKERIWARRR 447 Query: 480 Q 480 Q Sbjct: 448 Q 448 >gi|223042734|ref|ZP_03612782.1| putative deoxyribodipyrimidine photolyase [Staphylococcus capitis SK14] gi|222443588|gb|EEE49685.1| putative deoxyribodipyrimidine photolyase [Staphylococcus capitis SK14] Length = 457 Score = 287 bits (735), Expect = 2e-75, Method: Composition-based stats. Identities = 139/475 (29%), Positives = 227/475 (47%), Gaps = 32/475 (6%) Query: 12 VWLRNDLRITDNKALYAACHNSDAKVI-AVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 V L R TDN L+ + + + +I E + + + ++ Y +L + Sbjct: 5 VILNRVFR-TDNNPLFEYVYQNMEDIDQCYYIIPKEDFG--NEAKMKRNYYYGTLQKFVH 61 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQ---YEINEVRRDKLLEKRL 127 +L + I F + L + ++ + ++ Y E E+ Sbjct: 62 ALYENDI-------QPFLMDYDELVDFFKEKGINEVVIAGDIMSYHKEEYDILHQREQFK 114 Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187 + + + + P N+ + YKV+T F K L++ + + + + G Sbjct: 115 KEDISVTTIRANHYFKPSKTRNNKGEPYKVFTSFYKKWRPYLMKRTVYNYDIKDLAKVGV 174 Query: 188 VTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSP 247 + + DY I E+ A + F + + Y R+ TSQLS Sbjct: 175 KSKQKLK--GDYSQSGIS------EETAQYKWSDFLDKDIEDYDSNREYLPEVLTSQLSI 226 Query: 248 YLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPF 307 YL+ GVL Q +N L + + K + +++ ELI+REFY LM YP F Sbjct: 227 YLAYGVLDIIQIFNDLLDGY----DKDEQNYEAFIRELIFREFYYVLMTQYPKTA-HIAF 281 Query: 308 IPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLV 367 + + W+ + WK+G TGFPIIDAAM +LNT G+MHNR+RM+ + FL KDL + Sbjct: 282 KEKYQNLNWSYNEDNFDLWKKGMTGFPIIDAAMGELNTTGYMHNRMRMVVSQFLTKDLFI 341 Query: 368 DWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRH 427 DW GEEYF +L+D D ASN GWQW+ASTG D+VPYFR+FNP Q +RFD + +I+ Sbjct: 342 DWTWGEEYFRQKLIDYDAASNVHGWQWSASTGTDAVPYFRMFNPVRQSERFDKKALYIKK 401 Query: 428 WLPELNNVPTQYIHAPHSWLDK-----NDLSLNYPLPIVDHKKACHHTLNQYYAA 477 ++P LN+V +Y+H + + +L +YP +V+H ++ H ++++ A Sbjct: 402 FIPTLNDVDAKYLHNTYKHERQIKEQGIELGKDYPKQMVNHSESRDHVMSEFKAM 456 >gi|302844305|ref|XP_002953693.1| hypothetical protein VOLCADRAFT_121192 [Volvox carteri f. nagariensis] gi|300261102|gb|EFJ45317.1| hypothetical protein VOLCADRAFT_121192 [Volvox carteri f. nagariensis] Length = 1025 Score = 287 bits (735), Expect = 2e-75, Method: Composition-based stats. Identities = 123/541 (22%), Positives = 202/541 (37%), Gaps = 90/541 (16%) Query: 1 MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDA----KVIAVFIATPE-----QWRQH 51 M A ++W RNDLR+ DN ++ A +V+ V+ P W Sbjct: 1 MAAAGCGKRVVLWFRNDLRLHDNYIVHDAVQRVKRGEASEVLPVYCFDPRVYGTTPWGHF 60 Query: 52 GISARQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCL-QQRVTKLFYNR 110 A ++ F+ + ++ L G F E L + + Sbjct: 61 KTGAHRAAFLLECVTDLKSRLRDVGSDLLV----AFGKPEEVLPGLLEGSSGPSLVLTAE 116 Query: 111 QYEINEVRRDKLLEKRLQHR-----------------VICKSFDDSVLLPPGSIL----- 148 + E R D + + L+ + F + + Sbjct: 117 EVTSEETRTDVAVARALKQQRRPQADAAAAAGGGSGSAKLLRFWGHTMYHIDDLTQPPEG 176 Query: 149 -------NHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPSNIPRFF---- 197 M V+TPFR+ + + LP P Sbjct: 177 GGKAAFAPGMKDMPDVFTPFREKVEKRCPVRKDLPLPQKGDLPLPPTEALPAAAAAALAA 236 Query: 198 --------------------DYPFQAIDPMFPIGEQNALHILRKFCKEKV--YYYVEQRD 235 +P +D F GE AL LR + + Y + R+ Sbjct: 237 APPTWEQLPYPPAARPPPPTKHPKAVLD--FKGGETAALARLRYYLWDSDLIASYFDTRN 294 Query: 236 -IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHL 294 + +++ +P+L+ G +SPR+ ++ +++ + + + + ELIWR+++R Sbjct: 295 GMLGGDYSTKFAPWLAAGCISPRKIYHEIRKY--EAQRQSNKSTYWVIFELIWRDYFRFF 352 Query: 295 MAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLR 354 + + + + WN D+ L W+ G TG P++DA MR+L G+M NR R Sbjct: 353 ALKHGNRIFFETGTSGL-PLVWNPDADLWHRWRDGRTGLPLVDANMRELAATGFMSNRGR 411 Query: 355 MITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRI------ 408 AS+LV DL +DWR G +YF SQLLD D+ SN G W AA + +F I Sbjct: 412 QNLASYLVLDLGIDWRRGADYFESQLLDYDVTSNWGNWVAAAGLAGGRINHFNIAKQASD 471 Query: 409 ---FNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND------LSLNYPLP 459 F K +DPQG ++R W PEL +VP +H P + + ++YP P Sbjct: 472 VGAFRIGGGSKDYDPQGDYVRTWCPELRHVPVGKVHEPWLMSKEEQEKAGCRIGVDYPNP 531 Query: 460 I 460 I Sbjct: 532 I 532 Score = 224 bits (571), Expect = 2e-56, Method: Composition-based stats. Identities = 101/426 (23%), Positives = 164/426 (38%), Gaps = 76/426 (17%) Query: 106 LFYNRQYEINEVRRDKLLEKRLQHR-----------------VICKSFDDSVLLPPGSIL 148 + + E R D + + L+ + F + + Sbjct: 556 VLTAEEVTSEETRTDVAVARALKQQRRPQADAAAAAGGGSGSAKLLRFWGHTMYHIDDLT 615 Query: 149 ------------NHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPSNIPRF 196 M V+TPFR+ + + LP P Sbjct: 616 QPPEGGGKAAFAPGMKDMPDVFTPFREKVEKRFPVRKDLPLPQKGDLPLPPTEALPAAAA 675 Query: 197 F------------------------DYPFQAIDPMFPIGEQNALHILRKFCKEKV--YYY 230 +P +D F GE AL LR + + Y Sbjct: 676 AALAAAPPTWEQLPYPPAARPPPPTKHPKAVLD--FKGGETAALARLRYYLWDSDLIASY 733 Query: 231 VEQRD-IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWRE 289 + R+ + +++ +P+L+ G +SPR+ ++ +++ + + + + ELIWR+ Sbjct: 734 FDTRNGMLGGDYSTKFAPWLAAGCISPRKIYHEIRKY--EAQRQSNKSTYWVIFELIWRD 791 Query: 290 FYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWM 349 ++R + + + + WN D L W+ G TG P++DA MR+L G+M Sbjct: 792 YFRFFALKHGNRIFFETGTSGL-PLVWNPDPDLWHRWRDGRTGLPLVDANMRELAATGFM 850 Query: 350 HNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRI- 408 NR R AS+LV DL +DWR G +YF SQLLD D+ SN G W AA + +F I Sbjct: 851 SNRGRQNVASYLVLDLGIDWRRGADYFESQLLDYDVTSNWGNWVAAAGLAGGRINHFNIA 910 Query: 409 --------FNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND------LSL 454 F K +DPQG ++R W PEL +VP +H P + + + Sbjct: 911 KQASDVGAFRIGGGSKDYDPQGDYVRTWCPELRHVPVGKVHEPWLMSKEEQEKAGCRIGV 970 Query: 455 NYPLPI 460 +YP PI Sbjct: 971 DYPNPI 976 >gi|291303346|ref|YP_003514624.1| Deoxyribodipyrimidine photo-lyase [Stackebrandtia nassauensis DSM 44728] gi|290572566|gb|ADD45531.1| Deoxyribodipyrimidine photo-lyase [Stackebrandtia nassauensis DSM 44728] Length = 436 Score = 287 bits (735), Expect = 2e-75, Method: Composition-based stats. Identities = 126/426 (29%), Positives = 189/426 (44%), Gaps = 29/426 (6%) Query: 6 AMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASL 65 M +V DLRI DN AL A ++D V+ +++A + Q F+ SL Sbjct: 36 TMRTIVVLFTRDLRIRDNPALALASRHADT-VVPLYVAD----DSPPLPPNQRRFLVESL 90 Query: 66 LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125 +++SL + G + D +E C + Y R + L + Sbjct: 91 TDLRESLRRLGGDLLVRRG----DPVEQTLKLCRLLATDGIGMAEDYGPAARRLRQRLAE 146 Query: 126 RLQ-HRVICKSFDDSVLLPPGSILNHAL-QMYKVYTPFRKALIQNLVQADLRSLPVPAIR 183 + RV + F ++ PG++ YKV+TP+ ++ + + + AIR Sbjct: 147 AAEAERVGLRLFPGVTIVEPGAVRPTTGADHYKVFTPYLRSWSATPWRPEHEAP--QAIR 204 Query: 184 LTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS 243 L VT + + GE L + ++ Y D A T+ Sbjct: 205 LPADVTGDDPASVIGPVEGGSSDVVDGGETAGLRRWDSWI-DREPDYPAIHDDLAADDTT 263 Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCM 303 +LS YL G +SP + + +L WR+FY ++ +P + Sbjct: 264 RLSGYLRFGCVSPLVV------------AADPRTPEALVRQLCWRDFYHQVLHGFPRLAT 311 Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363 + P W D L+AW+ G TG P++DA MRQL T GWMHNR RM+ AS+L K Sbjct: 312 DN-YRPGARD-AWVDDEPALRAWQDGETGVPLVDAGMRQLRTQGWMHNRARMVAASYLTK 369 Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423 DL +DWR G +F L+D D+A+N G WQW A TGNDS PY R FNP Q +R+DP+ Sbjct: 370 DLGIDWRHGAAWFDRWLVDADVANNYGNWQWTAGTGNDSRPYRR-FNPARQAQRYDPRHE 428 Query: 424 FIRHWL 429 + WL Sbjct: 429 YRDRWL 434 >gi|117927361|ref|YP_871912.1| deoxyribodipyrimidine photo-lyase type I [Acidothermus cellulolyticus 11B] gi|117647824|gb|ABK51926.1| deoxyribodipyrimidine photo-lyase type I [Acidothermus cellulolyticus 11B] Length = 497 Score = 287 bits (735), Expect = 3e-75, Method: Composition-based stats. Identities = 135/487 (27%), Positives = 210/487 (43%), Gaps = 52/487 (10%) Query: 11 LVWLRNDLRITDNKALYAACHNSD-AKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69 + W R DLR+ D+ AL AA + ++ +F+ P G + F+ + L ++ Sbjct: 34 VYWFRRDLRLADSPALVAAARAAGAEPIVPLFVVDPR--AGRGAGPNRWQFLASCLEELD 91 Query: 70 KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ- 128 + L + + + + + + + + RRD+++ +RL Sbjct: 92 RQLGGALTLRRAPGVGGAAAVAAIVAGFAAEVGAEIVVASGETTPYGRRRDRIVAERLAA 151 Query: 129 HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188 D + PG + Y+V++ F +A + V+A PA R V Sbjct: 152 EDRRLLLLDTPYCVAPGRLRRTGGHPYRVFSAFYRAWLAEPVEAP---YERPAARFDALV 208 Query: 189 TPSNIPRF---------------FDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQ 233 + D P + GE+ A+ L +FC+ + Y Sbjct: 209 SDGEATDLVDAAGRGYDVSPSWWRDLPLGPAPHLPAAGERAAIDRLTQFCESALPQYDRH 268 Query: 234 RDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRH 293 RD P + GTS+LS L G L PR + ++ +L EL WREF+ Sbjct: 269 RDRPDMAGTSRLSADLHFGTLHPRTVRDAARKTVEG------PALDRFLAELAWREFFAD 322 Query: 294 LMAFYPSVCMG--KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHN 351 ++ P P + + AW +G TG+ ++DA MRQL + GWMHN Sbjct: 323 VLWHRPDAAWHSWDPIGRHLAVDDGPQARERFTAWARGETGYGLVDAGMRQLLSEGWMHN 382 Query: 352 RLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNP 411 R+RM++ASFLVKDL +DWR G +F+ L+DGD+ASNN WQW A G D+ PY RIFNP Sbjct: 383 RVRMVSASFLVKDLHLDWRWGARWFLWHLVDGDIASNNLNWQWVAGIGTDAAPYHRIFNP 442 Query: 412 TIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTL 471 Q +RFDP G + R + ++P + L IV+HK L Sbjct: 443 DRQAERFDPDGAYRRRYC---ADLPAR-------------------LSIVNHKAERAEAL 480 Query: 472 NQYYAAK 478 ++ AAK Sbjct: 481 TRWAAAK 487 >gi|323454932|gb|EGB10801.1| hypothetical protein AURANDRAFT_77923 [Aureococcus anophagefferens] Length = 526 Score = 286 bits (733), Expect = 4e-75, Method: Composition-based stats. Identities = 120/488 (24%), Positives = 197/488 (40%), Gaps = 45/488 (9%) Query: 3 ATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQ---------HGI 53 A TA +VWLR++LR+ DN L A V+ V++ + Sbjct: 5 AATAKPTTIVWLRDELRVHDNALLAEAAARG-GPVLPVYVLDDRVFDAAATSESGGSRKC 63 Query: 54 SARQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTK-LFYNRQY 112 A+++ F +L ++ +L +G + + L C + + Sbjct: 64 GAKRARFTLEALDDLRATLGARGSGLVVERG----RPADVLAGLCAAVGGDATVLCSDAA 119 Query: 113 EINEVRRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQA 172 E + + + K + + L P + + + ++T +R + + + Sbjct: 120 CSEERKDEAAVAKVAPLAKVWE----GTLYHPEDL--RGVAFHDLFTAWRTKVEKAGTRV 173 Query: 173 DLRSLPVPAIRLTGPV-----TPSNIPRFFDYPFQAIDPM---------FPIGEQNALHI 218 P A P + +P + A D GE AL Sbjct: 174 RGDVFPKAATLPAPPAGVDAKLAAPLPTLDALGYDAADAACDGRGDFFAPAGGETAALAR 233 Query: 219 LRK--FCKEKVYYYVEQRD-IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPK 275 LRK F ++++ Y RD + +++L+P+LS G +SPR + IK K Sbjct: 234 LRKYVFEEDRLKDYFNTRDGMIGQGYSTKLAPWLSRGCVSPRAVARACADYERTRGIKNK 293 Query: 276 SGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPI 335 S + + EL WR+++ Y S + + W D L+ WK G TG P+ Sbjct: 294 S-TYWVVFELTWRDYFVFYAQKYGSKLFRPYGVKDIRERTWRADPEALRRWKAGETGAPL 352 Query: 336 IDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWA 395 +DA MR+L G+M NR R AS+LV DL +DWR+G E+F L+D +N G W A Sbjct: 353 VDANMRELAATGFMSNRGRQNVASYLVLDLGLDWRLGAEHFEEHLVDYTPEANWGNWHAA 412 Query: 396 ASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSL- 454 A V FN Q K +DP+G +++ W+PEL VP P S + + Sbjct: 413 AGLSGGRVNR---FNILKQSKDYDPKGDYVKLWIPELAKVPAPQCFTPSSLSKADREAAG 469 Query: 455 --NYPLPI 460 +YP P+ Sbjct: 470 AGDYPAPL 477 >gi|219119456|ref|XP_002180488.1| cyclobutane pyrimidine dimer 1 [Phaeodactylum tricornutum CCAP 1055/1] gi|217407961|gb|EEC47896.1| cyclobutane pyrimidine dimer 1 [Phaeodactylum tricornutum CCAP 1055/1] Length = 515 Score = 286 bits (733), Expect = 4e-75, Method: Composition-based stats. Identities = 114/508 (22%), Positives = 199/508 (39%), Gaps = 44/508 (8%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 + ++WL+ DLR+TD+ L A D V +++ P+Q + + F L+ + Sbjct: 1 MDVIWLKRDLRLTDHGPLAAVAQRKDRDVCILYLYEPDQLAEPSVHGSHVLFANEGLVDL 60 Query: 69 QKSLSQKGIVFQYHQCSNFD----------DSIEWLDSYCLQQRVTKLFYNRQYEI-NEV 117 LS + + + I+ L + Q+++ +L + + Sbjct: 61 DTKLSNLRRLSSGQNAAASKSFGSLTVCHCEVIQALQAIHAQKKIARLLAHMETGHMRSY 120 Query: 118 RRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALI---QNLVQADL 174 RDK + K + R I + P + ++ L + + + Q L Sbjct: 121 ARDKRVRKWCRDRKI------PFVELPQTGVSRCLTNRDDFHRNLQMFLKKKQYRTPTAL 174 Query: 175 RSLPVPAIRLTGPVTPSNIPRFFDYPFQ---AIDPMFPIGEQNALHILRKFCKEKVYYYV 231 V + L G + P + GE AL ILR F + + Sbjct: 175 ECNIVIDLELPGRSMEPLFAELIEIPLEQRVDRTERQQGGETTALEILRSFLYHRGVGFS 234 Query: 232 EQRDIPAIQGTS--QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWL------- 282 + P TS +LSPYL+ G +S R L+E L + WL Sbjct: 235 KGISSPNSSWTSCSRLSPYLTWGQISLRHVVQALQERQAQLKTQKCRSDDRWLRSFTAFS 294 Query: 283 NELIWREFYRHLMAFYPSVCM---GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAA 339 + + WR + + P + F P + + + QAW G TG+P++DA Sbjct: 295 SRVHWRSHFIQKLESEPEMEQRDVNAAFQPLRRQ-PGDWNECYYQAWSTGNTGYPMMDAC 353 Query: 340 MRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTG 399 MR L+ GW++ R+R + SF +L +DW + LD + + Q +G Sbjct: 354 MRCLHRHGWVNFRMRAMLVSFASYNLWLDWHRFAPHLARVFLDYEPGIHYPQIQMQ--SG 411 Query: 400 NDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND------LS 453 + R ++ T QGK DP+G F+R ++PEL +VP YIH P + Sbjct: 412 TTGINALRCYSVTKQGKEHDPRGIFVRKYIPELQSVPNDYIHEPWKMSKSMQAKCGVHIG 471 Query: 454 LNYPLPIVDHKKACHHTLNQYYAAKKQS 481 +YP PIV+ ++ + A ++++ Sbjct: 472 EHYPAPIVNEQETAKSAKERIAAVRRRN 499 >gi|37725009|gb|AAO23971.1| cryptochrome 2A [Pisum sativum] Length = 375 Score = 286 bits (733), Expect = 4e-75, Method: Composition-based stats. Identities = 101/379 (26%), Positives = 164/379 (43%), Gaps = 23/379 (6%) Query: 10 HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69 +VW R DLRI DN AL AA D V VFI P++ Q ++ SL + Sbjct: 6 TIVWFRRDLRIEDNPALAAAAR--DGSVFPVFIWCPKEEGQFYPGRVSRWWLKQSLAHLD 63 Query: 70 KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH 129 +SL G + D ++ L + TK+ +N Y+ + RD ++++L Sbjct: 64 QSLKSLGAKLVLIKT---DSTLNALLECVNAIQATKVVFNHLYDPVSLVRDHNIKEKLVE 120 Query: 130 RVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188 I KS++ +L P + + + + PF + + ++ P I G V Sbjct: 121 LGISVKSYNGDLLYEPWELYDEKGHAFTTFDPFWERCLHKQMEPVSLIPPWQLIPAKGKV 180 Query: 189 TPSNIPRFFDYPFQA---------IDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAI 239 D + + + G NA L +F +++ Y + R Sbjct: 181 ---ERCSIEDLGLENELEKPSNALLGRAWSPGWGNANKALTEFMDKQLLNYSKNRQKVGG 237 Query: 240 QGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKP----KSGAFSWLNELIWREFYRHLM 295 TS LSPYL G LS R+ + + + + + K +L + RE+ R+L Sbjct: 238 DSTSLLSPYLHFGELSVRKVFQMARVKQISWGNEGNSVGKESVTLFLRAIGLREYSRYLC 297 Query: 296 AFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRM 355 +P + + WN D + W+QG TG+P++DA MR+L GWMHNR+R+ Sbjct: 298 FNFP-FTHERALLGHLSFFPWNADPSNFKTWRQGRTGYPLVDAGMRELWATGWMHNRIRV 356 Query: 356 ITASFLVKDLLVDWRIGEE 374 I +SF VK LL+ W+ G + Sbjct: 357 IVSSFAVKMLLLPWKWGMK 375 >gi|260829106|ref|XP_002609503.1| hypothetical protein BRAFLDRAFT_230208 [Branchiostoma floridae] gi|229294860|gb|EEN65513.1| hypothetical protein BRAFLDRAFT_230208 [Branchiostoma floridae] Length = 522 Score = 286 bits (732), Expect = 5e-75, Method: Composition-based stats. Identities = 121/501 (24%), Positives = 194/501 (38%), Gaps = 37/501 (7%) Query: 10 HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGI--SARQSHFIYASLLQ 67 + W R LR DN +L A S V VF+ + + I A Q F+ L Sbjct: 9 TIHWFRKGLRFHDNPSLLHALRTSH-HVYPVFVMDLDFMKDFKIRSGANQWRFVIECLQD 67 Query: 68 VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK-R 126 + L G+ + ++ + + + +T+L ++ + E RD + K Sbjct: 68 LDTRLRAYGLRLFVARG----NAEAFFAEHFRKWNITQLTHDVETEHYHRFRDAAVRKIA 123 Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 + V ++ L I+ + + + ++++ S A Sbjct: 124 VDEGVEVVNYVAHTLYNIDKIIEYNGGSAPLTYRQFQKVLKDFGAPPQASETATAEHFAS 183 Query: 187 PVTPS--------NIPRFFDYPFQAIDP-MFPIGEQNALHILRKFCKEKVY--YYVEQRD 235 P N+ + + P F GE L + K + + + + + + Sbjct: 184 CSVPLEALRDERYNMVTLEELGMRCEHPSKFVGGETEGLRRVEKHLQNQGWVTQFEKPKT 243 Query: 236 IPA--IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRH 293 P + T+ LSPY S G LS R ++RL + + L ++ A S +I R Sbjct: 244 APTSLLPSTTGLSPYFSFGCLSVRHFYHRLDKIYAKLR-SHQTSASSKSRVMIERTRCVL 302 Query: 294 LMAFYPSVCMGKP-----FIPWTEKIEWNKDSHLLQAWKQ--GYTGFPIIDAAMRQLNTI 346 L+ C W + S + + TGFP IDA M QL Sbjct: 303 LLEMLSRTCRLIARLIFLLCNWHNRFLQLTISDFVACFLSSVAETGFPWIDAIMSQLQKE 362 Query: 347 GWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPY 405 GW+H+ R A FL + DL + W G++ F LLD D + N G W W + + Y Sbjct: 363 GWVHHLARHAVACFLTRGDLWISWEEGQKVFEELLLDADYSVNAGNWMWLSGSAFYHQ-Y 421 Query: 406 FRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSW------LDKNDLSLNYPLP 459 RIF P GKR DP GTFIR +LP L + P QYI+ P + ++YP P Sbjct: 422 TRIFCPVRFGKRTDPDGTFIRAYLPVLKDFPAQYIYEPWKAPLNVQEAAGCIVGMDYPFP 481 Query: 460 IVDHKKACHHTLNQYYAAKKQ 480 +VDH+ L ++Q Sbjct: 482 MVDHEIVSQQNLELMREIREQ 502 >gi|195995819|ref|XP_002107778.1| hypothetical protein TRIADDRAFT_19715 [Trichoplax adhaerens] gi|190588554|gb|EDV28576.1| hypothetical protein TRIADDRAFT_19715 [Trichoplax adhaerens] Length = 384 Score = 286 bits (732), Expect = 5e-75, Method: Composition-based stats. Identities = 115/389 (29%), Positives = 176/389 (45%), Gaps = 15/389 (3%) Query: 4 TTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYA 63 ++ + LVWLR DLR+ DN AL+ A +I V+I + + ++Y Sbjct: 2 SSKIPCTLVWLRRDLRLIDNPALFHAAKRGQ--LITVYIFDEDCSGRRKTGQACLWWLYH 59 Query: 64 SLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLL 123 SL + LSQ I + D+ L +++NR YE E RD + Sbjct: 60 SLKSLHNQLSQWNIPLIMKSGN---DAFTILKELLDSYNADTIYWNRCYEPFEYNRDCSI 116 Query: 124 EKRLQ-HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAI 182 E++L+ V +++ D VL P +I ++Y F + P Sbjct: 117 EEKLKMENVTVETYQDRVLFEPWTIKTAKGGPVQIYIHFWNQCLSLPQPRKPYDKPKFKN 176 Query: 183 R---LTGPVTPSNIPRFFDYPFQ---AIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDI 236 + + P+ R + + GE+ A+ L+ F K + Y E+ Sbjct: 177 QTGCQSKCDEPAVWQRLAKLSQDMPMKLQDFWHPGEEQAISKLKSFIKNSLNAYAEKSQC 236 Query: 237 PAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKP--KSGAFSWLNELIWREFYRHL 294 + TS LSPYL G +SP W+ ++ +L L WRE+ HL Sbjct: 237 LRLNTTSNLSPYLHFGEISPFTVWHSVRHASSSAEPPAVKSESLKQYLRSLGWREYTCHL 296 Query: 295 MAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLR 354 + YP + K F E+++ D LQ+W+QG TG+P++DA MRQL+ G M NRLR Sbjct: 297 LFHYPDLP-QKCFRSSFEQLKLQVDPVKLQSWQQGNTGYPVVDAGMRQLSVAGIMPNRLR 355 Query: 355 MITASFLVKDLLVDWRIGEEYFMSQLLDG 383 MI ASFL+K LLV W+ GEE+F S+L+D Sbjct: 356 MIVASFLIKHLLVPWQKGEEWFWSKLIDA 384 >gi|254506555|ref|ZP_05118696.1| FAD binding domain of DNA photolyase protein [Vibrio parahaemolyticus 16] gi|219550428|gb|EED27412.1| FAD binding domain of DNA photolyase protein [Vibrio parahaemolyticus 16] Length = 492 Score = 286 bits (732), Expect = 6e-75, Method: Composition-based stats. Identities = 113/488 (23%), Positives = 198/488 (40%), Gaps = 30/488 (6%) Query: 8 SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67 S++LVWL+ DLR+TD++ L+ A + ++I P S R F+ SL Sbjct: 3 SINLVWLKRDLRLTDHQPLHDAIQDG-TPFALIYIFEPLLLNDPHFSDRHWRFVLQSLDD 61 Query: 68 VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEV-RRDKLLEKR 126 + ++L+ G F D+ + +S + K+F +++ +N RDK L Sbjct: 62 INETLTPFGTSVHIL----FGDATQCFESLAHHYSIGKVFSHQEIGLNNTFERDKRLAAW 117 Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 I G++L A + + + L L + L G Sbjct: 118 FTSNGIQWHESQH-----GAVLRGAKTRQQWDERWHTFMRAPLADPQLDHARW--VNLEG 170 Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ--GTSQ 244 ++ +A + M G Q A L F + + Y + P++ ++ Sbjct: 171 IEPHMRFSPPLEWQGKA-NGMQTGGSQLAWKTLDDFFRRRGKDYYRRISSPSLSRSACTR 229 Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSV--- 301 +SPYL+ G +S R+ + L + + K A + + L W + + Sbjct: 230 ISPYLAWGNVSLREVYQYLLQHWQLKGFK--RSAIALSSRLHWHCHFMQKFESEVEMEFR 287 Query: 302 CMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFL 361 C+ + + P + KD +L+AWK G TG P++DA MR L+ G+++ R+R + S L Sbjct: 288 CLNRGYEPLIVQ-STRKDEMMLKAWKTGTTGLPLVDACMRCLHHTGYLNFRMRAMLVSVL 346 Query: 362 VKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQ 421 + DWR G + LD + + +Q G + RI+NPT Q + DP Sbjct: 347 CHHMNQDWRDGVTHLAQLFLDFEPGIHYPQFQMQ--AGVTGINTVRIYNPTKQAQEHDPD 404 Query: 422 GTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLN------YPLPIVDHKKACHHTLNQYY 475 G FI+ WLPEL +P + P + Y PI+D + + Sbjct: 405 GHFIKKWLPELAALPAPLLFEPWKMTPMEIMMYEIPKQSLYLNPIIDVDNCAREARERLW 464 Query: 476 AAKKQSLL 483 + +K+ + Sbjct: 465 SWQKEPAV 472 >gi|148976255|ref|ZP_01812979.1| deoxyribodipyrimidine photolyase, putative [Vibrionales bacterium SWAT-3] gi|145964349|gb|EDK29604.1| deoxyribodipyrimidine photolyase, putative [Vibrionales bacterium SWAT-3] Length = 497 Score = 286 bits (732), Expect = 6e-75, Method: Composition-based stats. Identities = 108/485 (22%), Positives = 200/485 (41%), Gaps = 32/485 (6%) Query: 8 SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67 ++++VWL+ DLR+TD+ L A + I ++I P S R F++ SL Sbjct: 3 TINVVWLKRDLRLTDHAPLQHALSD-QYPTILLYIFEPMLLNNAHYSERHWRFVWQSLQC 61 Query: 68 VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEIN-EVRRDKLLEKR 126 + +SL G S +++ ++ + + LF +++ +N RD+ L Sbjct: 62 MNQSLKAYGHQVSILHGS----AVDCFEAIQSRYHIKNLFSHQEIGLNCTFERDRELSTW 117 Query: 127 L-QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185 +H + + F G+++ + + + + + ++ Sbjct: 118 FTEHNIPWQEF------AQGAVVRGSKDRVGWDKHWNSVMRAPIEE---SLFTAESLHTL 168 Query: 186 GPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIP--AIQGTS 243 P ++ + G A L F + Y P + + Sbjct: 169 DPEELELAMEPPQAWLTKVNGIQTGGSALAWATLHDFFDRRGRDYYRSISSPEASRHACT 228 Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSV-- 301 +LSPYL+ G +S R+ + L + + A S + L W + ++ Sbjct: 229 RLSPYLAWGNISLREVYQHLLGHWQVAGFRRSLIALS--SRLHWHCHFMQKFESECAMEY 286 Query: 302 -CMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASF 360 C+ + +K E KD LQAWK G TG P++DA MR L+ G+++ R+R + SF Sbjct: 287 RCINHAYEALLQK-ETVKDPTHLQAWKIGMTGVPLVDACMRCLHHTGYINFRMRSMLVSF 345 Query: 361 LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDP 420 L + +DWR G + LD + + +Q G + RI+NPT Q + D Sbjct: 346 LTHHMNMDWRDGVTHLAQMFLDFEPGIHYPQFQMQ--AGVTGINTIRIYNPTKQAQEHDS 403 Query: 421 QGTFIRHWLPELNNVPTQYIHAPHSWL----DKNDLSLNYPL--PIVDHKKACHHTLNQY 474 G FIR W+PEL+++PT + P ++L ++P P+VD + + + Sbjct: 404 DGDFIRKWVPELSDIPTPLLFEPWKMTPMEVMMHELEPDFPYLNPVVDLEVSAKEARVRL 463 Query: 475 YAAKK 479 ++ +K Sbjct: 464 WSWRK 468 >gi|218516572|ref|ZP_03513412.1| deoxyribodipyrimidine photo-lyase protein [Rhizobium etli 8C-3] Length = 277 Score = 286 bits (732), Expect = 6e-75, Method: Composition-based stats. Identities = 118/281 (41%), Positives = 165/281 (58%), Gaps = 10/281 (3%) Query: 207 MFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEE 266 ++ GE+ A LR F ++++ Y E RD PA TS LSP+L++G +SP + W+ + Sbjct: 1 LWTPGEEGAQEKLRTFIEDRLDGYKENRDYPAKPATSMLSPHLALGEISPARIWDATRGL 60 Query: 267 FVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAW 326 L P + + E+ WR+F HL+A +P + + ++ EW AW Sbjct: 61 SKHL---PAADIVHFRKEIAWRDFSYHLLAHFPRLATAN-WEDRFDRFEWGSAEEDFNAW 116 Query: 327 KQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLA 386 +G TG+PI+DA MRQL GWMHNR+RMI ASFL+KDL+VDWR GE +F L+D D A Sbjct: 117 SRGMTGYPIVDAGMRQLWRYGWMHNRVRMIAASFLIKDLMVDWRHGEAWFRDTLVDADPA 176 Query: 387 SNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIH----A 442 +N WQW A +G D+ P+FR+FNP +QG++FDP G F+R +PEL + +YIH A Sbjct: 177 NNAASWQWVAGSGADASPFFRVFNPVLQGEKFDPDGDFVRSHVPELRKLDAKYIHRPFEA 236 Query: 443 PHSWLDKND--LSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481 P S LD D L YP P+VDH A L Y A + + Sbjct: 237 PKSVLDAADVILGETYPEPVVDHAGARKRALAAYNAIRGAA 277 >gi|297582918|ref|YP_003698698.1| DASH family cryptochrome [Bacillus selenitireducens MLS10] gi|297141375|gb|ADH98132.1| cryptochrome, DASH family [Bacillus selenitireducens MLS10] Length = 478 Score = 286 bits (731), Expect = 7e-75, Method: Composition-based stats. Identities = 133/482 (27%), Positives = 220/482 (45%), Gaps = 35/482 (7%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQ-----HGISARQSHFIYA 63 V+++W R+DLRI D++ L A H + + AVF+ + + F+ Sbjct: 4 VNVIWFRHDLRIHDHEPLRLA-HWAKEETEAVFVRDARMDEKVTPGLKRAGEHRERFLME 62 Query: 64 SLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLL 123 SL+ + SL +G+ F + I+WL ++ T +F + E R + + Sbjct: 63 SLVVLAGSLEAEGMPFTVLKGPVVKTMIDWLT----ERGATDVFLHEHPGFEERRDLEEV 118 Query: 124 EKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLV-QADLRSLPVPAI 182 ++ L H + + + + + +T FRK L +L RS + Sbjct: 119 QRALPH-IHWHVSEGHTMFRRDQLPFSFSEFPMSFTMFRKRLEAHLRLPEKKRSFSYDSY 177 Query: 183 RLTGPVTPSNIPRFFDYPFQAIDP------------MFPIGEQNALHILRKFC--KEKVY 228 P + F A+ + GEQ AL LR + +++ Sbjct: 178 DTVTEAEPVFLSGKESGSFGAVRGSGDHIPHAGGQGIVRGGEQEALARLRSYVGNASRLF 237 Query: 229 YYVEQRD-IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIW 287 Y E RD + A +S+LS +L+ G LSP++ + + + ++ ++ EL+W Sbjct: 238 TYKETRDGMFAFDDSSKLSFWLANGSLSPKRVYRAILD--MEAANGRNESSYWLFFELLW 295 Query: 288 REFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIG 347 RE+++ LM + K + I W++D L QAWK G TGFP++DAAMR+L G Sbjct: 296 REYFQWLMLATDARLFTKQGLLDV-AIVWHEDKALFQAWKDGETGFPLVDAAMRELKATG 354 Query: 348 WMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFR 407 +M NR R ASFL K+L ++W G YF QL+D D ASN G W + A G D R Sbjct: 355 YMSNRARQNAASFLTKNLGINWLWGARYFEEQLIDYDPASNYGNWAYQAGVGTDLRE-LR 413 Query: 408 IFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKAC 467 FN QG R+DP+G++ ++WL + +P ++ P ++P PIVD +++ Sbjct: 414 AFNVIGQGIRYDPKGSYAKNWLHLPDTLPGHTVYDPVKLSA----HTDWPQPIVDLEESL 469 Query: 468 HH 469 Sbjct: 470 ER 471 >gi|325105098|ref|YP_004274752.1| cryptochrome, DASH family [Pedobacter saltans DSM 12145] gi|324973946|gb|ADY52930.1| cryptochrome, DASH family [Pedobacter saltans DSM 12145] Length = 433 Score = 286 bits (731), Expect = 7e-75, Method: Composition-based stats. Identities = 116/442 (26%), Positives = 186/442 (42%), Gaps = 23/442 (5%) Query: 6 AMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISAR-----QSHF 60 A LVW RNDLRI DN+ L A S +++ V+I P + + ++ F Sbjct: 2 ASRTILVWFRNDLRIHDNEILIEATLKS-TEIVPVYIFDPRYYTDTSYGTKKTGKLRAQF 60 Query: 61 IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120 I S+ ++KSL G + E L + V +++++R+ E Sbjct: 61 IIDSVTDLKKSLKALGGDLLVVKGKPE----EVLPQLIKEYHVDEVYHHREVASEETDIS 116 Query: 121 KLLEKRL-QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPV 179 +E L + +V K F L + + ++ FRK + + D P Sbjct: 117 SAVEDALWKSQVNLKHFIGHTLYHKEDLPFPIKDIPDLFAKFRKKVEREGEIRDPFETPG 176 Query: 180 PAIRLTGPVTPSNIPRFFDYPFQAIDPM---FPIGEQNALHILRKFCKEKV--YYYVEQR 234 I + + S +P D F+ + + GE + L+ L ++ EK Y +R Sbjct: 177 Q-ISVPDSLASSEVPALEDLGFERSEQLDASIKGGESSGLNRLNEYLWEKDLLKEYKAKR 235 Query: 235 DIP-AIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRH 293 ++ SQLSP+LS+G +SPR+ + LK + NEL++R+F+R Sbjct: 236 NLLTGFNNNSQLSPWLSLGCISPRKVYWELKRYEHEKG--GTDNINLLFNELLFRDFFRF 293 Query: 294 LMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRL 353 + + + P + E L + WK G TG ++DA M +L G M + Sbjct: 294 MFKKHSTAYFVDIAQPMSLNAE---QQVLFEKWKNGETGIDLVDANMLELKHRGTMAYKG 350 Query: 354 RMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTI 413 R A++L+ +L + W G YF L+D ASN G W A G FN Sbjct: 351 RQTVAAYLISELELPWFYGAAYFEEMLIDYATASNWGNWALFAGIGTPQKEVNPAFNLDK 410 Query: 414 QGKRFDPQGTFIRHWLPELNNV 435 Q K DP+G +I+ WL EL Sbjct: 411 QIKDSDPKGDYIKVWLSELTEF 432 >gi|308049735|ref|YP_003913301.1| deoxyribodipyrimidine photo-lyase family protein (cryptochrome) [Ferrimonas balearica DSM 9799] gi|307631925|gb|ADN76227.1| deoxyribodipyrimidine photo-lyase family protein (cryptochrome) [Ferrimonas balearica DSM 9799] Length = 484 Score = 285 bits (730), Expect = 1e-74, Method: Composition-based stats. Identities = 113/483 (23%), Positives = 196/483 (40%), Gaps = 36/483 (7%) Query: 10 HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69 +VWL+ DLR+ D+ L AC SDA ++ +++ P+ + R F++ SL + Sbjct: 7 QVVWLKRDLRLQDHAPLAFACR-SDAPLLLLYLFEPQLVNDPHYAPRHWRFVWQSLKDLN 65 Query: 70 KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEV-RRDKLLEKRLQ 128 L+ G F D I+ L+ + +L + + ++ RD+ + + Sbjct: 66 AGLAPHGGRVTC----WFCDPIDALNRLASDFTLVQLLSHEETGLSVTFERDQAVSRWCD 121 Query: 129 HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188 + P G++ +RK + Q + D + + Sbjct: 122 DNGVPWHQW-----PNGAVQRGLNHRRGWDGHWRKTMAQPTAEPDWARVRWCHL---PDQ 173 Query: 189 TPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPA--IQGTSQLS 246 T R FQ P GE A L F ++ Y P S+LS Sbjct: 174 TIPADWRSAAEGFQ------PGGESAARDCLDGFLAQRGRDYHRHISQPGNSRTSCSRLS 227 Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP 306 PYL+ G LS RQ RL+++ +P + + L WR+ + + G+P Sbjct: 228 PYLAWGNLSVRQVIQRLRQDADTPDWRP--ARRALTSRLKWRDHFIQKFESECA-MEGRP 284 Query: 307 FIPWTEKIEWNKDSH---LLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363 +++D+ L AW+ G TG+P++DA+MR L+ G+++ R+R + SFL Sbjct: 285 INQAYRHFPYHQDADSDARLLAWQNGQTGYPLVDASMRALHQTGYLNFRMRAMLVSFLCH 344 Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423 L++DWR G + LD + + +Q A+ + RI+NP Q D G Sbjct: 345 HLMIDWRRGVHHLARLFLDFEPGIHYPQFQMQAAVT--GIHTIRIYNPVKQSLEQDSDGQ 402 Query: 424 FIRHWLPELNNVPTQYIHAPHS------WLDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477 FI+ + PEL +P H P L + + +YP PI+D + + Sbjct: 403 FIQAFCPELARLPVPVRHTPWQLTPMEHLLYEFEPGRDYPSPIIDLSETGPRARQLLWQW 462 Query: 478 KKQ 480 + + Sbjct: 463 RAR 465 >gi|145341190|ref|XP_001415696.1| predicted protein [Ostreococcus lucimarinus CCE9901] gi|144575919|gb|ABO93988.1| predicted protein [Ostreococcus lucimarinus CCE9901] Length = 551 Score = 285 bits (730), Expect = 1e-74, Method: Composition-based stats. Identities = 120/503 (23%), Positives = 203/503 (40%), Gaps = 54/503 (10%) Query: 1 MKATTAMSVHLVWLRNDLRITDNKALYAAC----HNSDAKVIAVFIATPEQWRQHG---- 52 M ++ + +VW RNDLR+ DN + A + A+V+ V++ ++ Sbjct: 1 MATSSPRTRVIVWFRNDLRLLDNAVVARAAALRGQSDAAEVVPVYVFDETFFKTSKRGLA 60 Query: 53 -ISARQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQ 111 A + F + ++++L G D E + T + + Sbjct: 61 RFGAGRGKFTIECVDDLKRALRGVGSDLLVRCGKTEDVITEL--TLTGANDKTIVLTQTE 118 Query: 112 YEINEVRRDKLLEKRLQHRV-------ICKSFDDSVLLPPGSILN----HALQMYKVYTP 160 E D+ +E+ + R + S L + + V+TP Sbjct: 119 VTSEETDMDRAVERASKERARSGGASASMERLWGSTLYHADDLPYDFAGGLHDLPDVFTP 178 Query: 161 FRKALIQNLVQADLRSLPVPAIRLTGPVT---PSNIPRFFDYPFQAIDPM---------- 207 FR + + P + P + +P D PF + + Sbjct: 179 FRNKVESKCSVRAVVPAPTANALGSVPASVAGLDWMPEPKDLPFASAEIAPACEKWLKDG 238 Query: 208 --------FPIGEQNALHILRKFCKEKV--YYYVEQRD-IPAIQGTSQLSPYLSIGVLSP 256 F GE AL ++ + + Y E R+ + +++L+P+L++G +SP Sbjct: 239 ADERSVLEFKGGESQALARVKYYLWDSDLLATYFETRNGMLGGDYSTKLAPWLALGCVSP 298 Query: 257 RQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEW 316 R + ++ + + + ELIWR+F++ + + W Sbjct: 299 RYVVSEIRRYESARV--ENKSTYWVIFELIWRDFFKFFALKHGNKIFHLDGTANRTA-SW 355 Query: 317 NKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYF 376 D +L+AWK G TG+P+IDA MR+L G+M NR R AS+L D VDWR G ++F Sbjct: 356 KSDEKILKAWKTGTTGYPLIDANMRELAATGFMSNRGRQNVASWLALDAGVDWRHGADWF 415 Query: 377 MSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVP 436 LLD D ASN G W AA + FN Q K +DP G +++ W+PEL +P Sbjct: 416 EHHLLDYDTASNWGNWCAAAGMTGGRINR---FNIAKQTKDYDPSGDYVKRWIPELREIP 472 Query: 437 TQYIHAPHSWLD--KNDLSLNYP 457 YI P+ ++ +SL+YP Sbjct: 473 AAYITEPNQAPRELRDRISLDYP 495 >gi|2564038|dbj|BAA22943.1| photolyase [Thermus thermophilus] Length = 420 Score = 285 bits (729), Expect = 1e-74, Method: Composition-based stats. Identities = 132/425 (31%), Positives = 200/425 (47%), Gaps = 35/425 (8%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M LVW R DLR+ D+ AL A V+ + + P + R+ + ++ Sbjct: 1 MGPLLVWHRGDLRLHDHPALLEALARG--PVVGLVVLDPNNLKTT---PRRRAWFLENVR 55 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 ++++ +G + ++ E + ++ Y RD +++ Sbjct: 56 ALREAYRARGGALWVLEGLPWEKVPEAARRL----KAKAVYALTSYTPYGRYRDAKVQEA 111 Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 L +L P + + Y+VYTPF + + LP P G Sbjct: 112 LP-------VPLHLLPAPHLLPPDLPRAYRVYTPFARRFLGVEA-----PLPAPEALPKG 159 Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246 P P GE+ AL LR F + K+ Y E+RD +G S+LS Sbjct: 160 PEEGEIPREDPGLPLPE------PGEEAALAGLRAFLEAKLPAYAEERDRLDGEGGSRLS 213 Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP 306 PY ++GVLSPR + + GA W+ EL+WR+F HL+ +P + +P Sbjct: 214 PYFALGVLSPRLAAWEAER-------RGGEGARKWVAELLWRDFSYHLLYHFPWMAE-RP 265 Query: 307 FIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLL 366 P + + W +D L +AW +G TG P++DAAMR+L+ G++ NR RM A F VK LL Sbjct: 266 LDPRFQALPWQEDEALFRAWYEGRTGVPLVDAAMRELHATGFLSNRARMNAAQFAVKHLL 325 Query: 367 VDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIR 426 + W+ EE F LLDGD A N GWQWA G D+ PYFR+FNP +QG+R DP+G +++ Sbjct: 326 LPWKRCEEAFRHLLLDGDRAVNLQGWQWAGGLGVDAAPYFRVFNPVLQGERHDPEGRWLK 385 Query: 427 HWLPE 431 W PE Sbjct: 386 RWAPE 390 >gi|46255129|ref|YP_006041.1| deoxyribodipyrimidine photolyase [Thermus thermophilus HB27] gi|47606703|sp|P61496|PHR_THET2 RecName: Full=Deoxyribodipyrimidine photo-lyase; AltName: Full=DNA photolyase; AltName: Full=Photoreactivating enzyme gi|46197978|gb|AAS82388.1| deoxyribodipyrimidine photolyase [Thermus thermophilus HB27] Length = 420 Score = 285 bits (729), Expect = 1e-74, Method: Composition-based stats. Identities = 132/425 (31%), Positives = 200/425 (47%), Gaps = 35/425 (8%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M LVW R DLR+ D+ AL A V+ + + P + R+ + ++ Sbjct: 1 MGPLLVWHRGDLRLHDHPALLEALARG--PVVGLVVLDPNNLKTT---PRRRAWFLENVR 55 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 ++++ +G + ++ E + ++ Y RD +++ Sbjct: 56 ALREAYRARGGALWVLEGLPWEKVPEAARRL----KAKAVYALTSYTPYGRYRDAKVQEA 111 Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 L +L P + + Y+VYTPF + + LP P G Sbjct: 112 LP-------VPLHLLPAPHLLPPDLPRAYRVYTPFARRFLGVEA-----PLPAPEALPKG 159 Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246 P P GE+ AL LR F + K+ Y E+RD +G S+LS Sbjct: 160 PEEGEIPREDPGLPLPE------PGEEAALAGLRAFLEAKLPRYAEERDRLDGEGGSRLS 213 Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP 306 PY ++GVLSPR + + GA W+ EL+WR+F HL+ +P + +P Sbjct: 214 PYFALGVLSPRLAAWEAER-------RGGEGARKWVAELLWRDFSYHLLYHFPWMAE-RP 265 Query: 307 FIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLL 366 P + + W +D L +AW +G TG P++DAAMR+L+ G++ NR RM A F VK LL Sbjct: 266 LDPRFQALPWQEDEALFRAWYEGRTGVPLVDAAMRELHATGFLSNRARMNAAQFAVKHLL 325 Query: 367 VDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIR 426 + W+ EE F LLDGD A N GWQWA G D+ PYFR+FNP +QG+R DP+G +++ Sbjct: 326 LPWKRCEEAFRHLLLDGDRAVNLQGWQWAGGLGVDAAPYFRVFNPVLQGERHDPEGRWLK 385 Query: 427 HWLPE 431 W PE Sbjct: 386 RWAPE 390 >gi|260063633|ref|YP_003196713.1| deoxyribodipyrimidine photolyase [Robiginitalea biformata HTCC2501] gi|88783078|gb|EAR14251.1| deoxyribodipyrimidine photolyase [Robiginitalea biformata HTCC2501] Length = 515 Score = 285 bits (729), Expect = 1e-74, Method: Composition-based stats. Identities = 121/439 (27%), Positives = 191/439 (43%), Gaps = 26/439 (5%) Query: 6 AMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQ-----SHF 60 M+ L W RNDLR+TDN L AAC S +V+ VF P +R+ R+ + F Sbjct: 43 TMTTALYWFRNDLRVTDNPGLLAAC--SSQRVLTVFCFDPADFREGDYGIRRMGPYRAGF 100 Query: 61 IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120 + S+L +++ L I H F + L + VT L R++ +E Sbjct: 101 LRESVLALREQLQGLNISLHIH----FGPPGDILPGMIKKYGVTDLHLQREWTRDECLAL 156 Query: 121 KLLEKRLQHRVICKSFDDSVLLPPGSILNHALQ-MYKVYTPFRKALIQNLVQADLRSLPV 179 + + L V L P + + + V+T FRK +++ P Sbjct: 157 DAVREGLPPGVTVHEHYQQFLFHPEDLPYDSFDDIPDVFTGFRKKCEKHVSVRSPEDTPA 216 Query: 180 PAIRLTGPVTPSNIPRFFDY----PFQAIDPMFP--IGEQNALHILRKFCKEKV--YYYV 231 + P +P + P FP GE A L+++ E Y Sbjct: 217 RREAVFAPAGDGGLPGWEALGMAPPRADSRSAFPFRGGEPAAWDRLQEYFWESRFLSTYK 276 Query: 232 EQRD-IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREF 290 R+ + + +++ SP+L+ G LS RQ + +K ++ + + + ELIWR++ Sbjct: 277 RTRNGLVGTRYSTKFSPWLANGSLSARQIYREVKRYEQEV--EKNRDTYWLVFELIWRDY 334 Query: 291 YRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMH 350 ++++ + I E+ +W W QG T I+A M++L GWM Sbjct: 335 FKYVSLKHGPKIFAPGGIREVER-DWGASREAFARWTQGETDSDFINANMQELRLTGWMS 393 Query: 351 NRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFN 410 NR R TAS+ +D+ DWR+G +F LLD D+ SN G W + ++ GND P R FN Sbjct: 394 NRGRQNTASYWSQDMGQDWRLGAAWFQYLLLDYDVHSNWGNWMYNSAVGND--PRNRKFN 451 Query: 411 PTIQGKRFDPQGTFIRHWL 429 P Q R+D G F R WL Sbjct: 452 PEHQASRYDASGKFRRLWL 470 >gi|302791750|ref|XP_002977641.1| hypothetical protein SELMODRAFT_417535 [Selaginella moellendorffii] gi|300154344|gb|EFJ20979.1| hypothetical protein SELMODRAFT_417535 [Selaginella moellendorffii] Length = 433 Score = 285 bits (729), Expect = 1e-74, Method: Composition-based stats. Identities = 116/446 (26%), Positives = 183/446 (41%), Gaps = 36/446 (8%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISA---------RQSH 59 + L+W R LR+ DN +L AACH S V VF+ P + + Sbjct: 1 MALLWFRKGLRLHDNPSLEAACHGS-RNVYPVFVLDPWFLAPDPSAPSPGSARVGINRIQ 59 Query: 60 FIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRR 119 F+ SL + ++LS +G + Q R+ KL + E + R Sbjct: 60 FLLESLQDLDRNLSSRGSKLLLVHGNPI------------QWRIRKLCFEFDTEPYALDR 107 Query: 120 DKLLEKRLQHRVICKSFD-DSVLLPPGS-ILNHALQMYKVYTPFRKALIQNLVQADLRSL 177 D +++ + + I + P I + + + F K L+ Sbjct: 108 DAKIKEHAKDKGIELHCSVSHTIFNPDLLIAKNGGKAPLTFQSFCKNLVPATKPIGNGPS 167 Query: 178 PVPAIRLTGPVTPSNIPRFFDYPFQAID---PMFPIGEQNALHILRKFCKEKVY--YYVE 232 +P + +P + + F GE L L + + + + Sbjct: 168 SIPPTGDLHGIKVVPVPTLEELGYTDFHEDFSPFRGGETVGLTRLEDSLANEKWVCEFEK 227 Query: 233 QRDIPAI---QGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWRE 289 + P T+ LSPYL G LS R ++R+KE + S S +L+WRE Sbjct: 228 PKGDPTAFIKPATTVLSPYLKFGCLSSRLFYSRVKEVYSRAK-SFTSPPVSLEAQLLWRE 286 Query: 290 FYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWM 349 F+ + P ++I W D LL AW+ G TG+P IDAAM QL GWM Sbjct: 287 FFYTAAYATANFDKM-VGNPTCKQIPWKDDDELLSAWRDGRTGYPWIDAAMTQLRKWGWM 345 Query: 350 HNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRI 408 H+ R A FL + D+ V W G + F L+D D + NNG W W +++ + Y RI Sbjct: 346 HHLARHAVACFLTRGDMFVYWEKGRDVFDRLLIDADWSINNGNWLWLSASAFFNQ-YHRI 404 Query: 409 FNPTIQGKRFDPQGTFIRHWLPELNN 434 ++P K++D QG +I+H+LP + Sbjct: 405 YSPITFAKKYDRQGNYIKHFLPVIKG 430 >gi|86134106|ref|ZP_01052688.1| cryptochrome, DASH family [Polaribacter sp. MED152] gi|85820969|gb|EAQ42116.1| cryptochrome, DASH family [Polaribacter sp. MED152] Length = 436 Score = 285 bits (729), Expect = 1e-74, Method: Composition-based stats. Identities = 120/436 (27%), Positives = 199/436 (45%), Gaps = 25/436 (5%) Query: 8 SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGIS-----ARQSHFIY 62 + L+W RN+LR DN ++ A N D KVIA++ P+ +++ ++ F+ Sbjct: 7 TTGLIWFRNNLRTQDNTSIQKAIQNHD-KVIAIYFFDPKYFKEDEFGFQKTAKFRAQFLL 65 Query: 63 ASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKL 122 ++ +++ L I + FD L + +V ++ +++ E+ +KL Sbjct: 66 ETITDLKQQLKDLNITLL----TYFDAPENQLLNITETYKVDTIYTQKEWTKEELDTNKL 121 Query: 123 LEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAI 182 + K + V D L P ++ N+ + V+T FRK L + V+ L Sbjct: 122 VLKTMSDTVNFVEDYDQFLYHPETVSNNFSNIPNVFTQFRKKL-EKYVKIQEEILIDKHD 180 Query: 183 RLTGPVTPSNIPRFFDYPF------QAIDPMFPIGEQNALHILRKFC--KEKVYYYVEQR 234 P+ IP + F + F GE AL L + +KV +Y + R Sbjct: 181 DSNLIHNPTEIPSLKELGFNDFVMPKKSAFPFKGGETAALERLNYYLFESKKVGFYKKTR 240 Query: 235 D-IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRH 293 + + +++ SP+L+ G LS R + ++K+ + + + ELIWR+++++ Sbjct: 241 NGLVGTDYSTKFSPWLANGSLSARTIYYQIKKY--EAEFGSNQSTYWVIFELIWRDYFKY 298 Query: 294 LMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRL 353 + Y I +WN D + +Q W G T ++A M +L GWM NR Sbjct: 299 ISLKYGYEIFKIGGILE-RNYQWNVDKNCIQDWINGNTKDDFVNANMIELKETGWMSNRG 357 Query: 354 RMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTI 413 R AS+ K+LL DWRIG YF S LLD D+ SN G W + A GND P R FN + Sbjct: 358 RQNVASYFAKELLQDWRIGAAYFESLLLDYDVHSNYGNWMYVAGVGND--PRDRKFNTQL 415 Query: 414 QGKRFDPQGTFIRHWL 429 Q +R+D F + WL Sbjct: 416 QAERYDANHKFRKLWL 431 >gi|330684348|gb|EGG96079.1| putative deoxyribodipyrimidine photo-lyase [Staphylococcus epidermidis VCU121] Length = 456 Score = 284 bits (728), Expect = 1e-74, Method: Composition-based stats. Identities = 140/479 (29%), Positives = 219/479 (45%), Gaps = 31/479 (6%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M V ++ L RI N L C+ + V I E++ + ++ F + +L Sbjct: 1 MKVGVI-LNRVFRIHHNPLLAYICNQLGSTDTCVLIIPKEKFG--DEAQLKASFYHGTLN 57 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQ---YEINEVRRDKLL 123 +L+ Y +N D L ++C Q++ K+ Y Sbjct: 58 AFINTLN------HYQIQTNVMDY-NHLIAFCKNQQLDKVVMASDIMSYHHESYDYPHQK 110 Query: 124 EKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIR 183 ++ + + ++ P N+ + YKV+T F K +++ + I Sbjct: 111 QRFQEAGIKVEALRVQHYFSPRKTFNNQGEPYKVFTSFYKKWRPYVIERHRAHYELSDIS 170 Query: 184 LTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS 243 G + P Q D + E+ + F + Y R+ TS Sbjct: 171 KIGEPAYA--------PTQINDSHSGLTEKEVQQQWQSFLNNDIQNYESNREYLPEVLTS 222 Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCM 303 QLS L+ G++ Q +N L + +S +++ ELI+REFY LM YP Sbjct: 223 QLSIALAYGLIDILQVFNDLLHGYE----SNESNYEAFIRELIFREFYYVLMTQYPETA- 277 Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363 + F IEW D WK G TG+PI+DAAM++LN G+MHNR+RM+T+ FL K Sbjct: 278 HQSFKEKYRNIEWVNDKQQFDQWKNGKTGYPIVDAAMQELNQTGYMHNRMRMVTSQFLTK 337 Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423 DLL+DW GE YF +L+D D ASN GWQW+ASTG D+VPYFR+FNP Q +RFDP Sbjct: 338 DLLIDWTWGETYFKDKLIDYDNASNVHGWQWSASTGTDAVPYFRMFNPIKQSERFDPNAL 397 Query: 424 FIRHWLPELNNVPTQYIHAPHSW-----LDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477 +I+ WL LN+V + +H L ++YP P+V+H+ + ++ + + Sbjct: 398 YIKQWLSTLNHVDSHLLHDTQKHMQLLKQQGIQLGVDYPEPMVNHQYSRQRVMSLFKSL 456 >gi|319401235|gb|EFV89450.1| deoxyribodipyrimidine photo-lyase [Staphylococcus epidermidis FRI909] Length = 457 Score = 284 bits (726), Expect = 2e-74, Method: Composition-based stats. Identities = 138/484 (28%), Positives = 233/484 (48%), Gaps = 41/484 (8%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M++ ++ L RI +N N ++ FI E++ + Q + Y S+ Sbjct: 1 MAIGVI-LNRVFRINNNPLFNYIYRNKESINQCYFIIPTEEFEEEAKKKAQ--YYYGSIQ 57 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKL--------FYNRQYEINEVR 118 + L + I F + L +C +Q + K+ +++ +Y+I R Sbjct: 58 KFMHELQRYDI-------EPFLMPYDKLIDFCKKQAIDKVVVAGDIMSYHHEEYDILHQR 110 Query: 119 RDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLP 178 ++ Q + S + P N + YKV+T F + L+ D Sbjct: 111 -----KRFKQADIQVISLRANHYFNPCKTHNKQGEPYKVFTSFYRKWRPYLMIRDEYDYH 165 Query: 179 VPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPA 238 + I + I + + I E++ + +F + + Y E R+ Sbjct: 166 LEDITKVAVKSQHKIKEDYH--------SYGISERDVQNRWSEFLSQDIENYKENREYLP 217 Query: 239 IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFY 298 TSQLS YL+ G++ Q +N L + + K + +++ ELI+REFY LM Y Sbjct: 218 EVLTSQLSIYLAYGMIDIIQVFNDLLQNY----DKNEQNYEAFIRELIFREFYYVLMTNY 273 Query: 299 PSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITA 358 P F ++++W+ + + WK G TGFPIIDAAM +L T G+MHNR+RM+ + Sbjct: 274 PETA-HVAFKEKYQQLKWSYNEENFKLWKDGNTGFPIIDAAMEELKTTGFMHNRMRMVVS 332 Query: 359 SFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRF 418 FL KDL +DW GE +F +L+D D ASN GWQW+ASTG D+VPYFR+FNP Q +RF Sbjct: 333 QFLTKDLFIDWIWGESFFKQKLIDYDAASNVHGWQWSASTGTDAVPYFRMFNPIRQSERF 392 Query: 419 DPQGTFIRHWLPELNNVPTQYIHAPHSWLDK-----NDLSLNYPLPIVDHKKACHHTLNQ 473 D +I+ ++P+LN + +Y+H H + + ++ +YP ++DHK++ +++ Sbjct: 393 DNNARYIKTYIPKLNQIDAKYLHDTHKFEQQIKGQGVEIGKDYPKQMIDHKESRQRVMSE 452 Query: 474 YYAA 477 + A Sbjct: 453 FKAL 456 >gi|239636691|ref|ZP_04677693.1| deoxyribodipyrimidine photo-lyase [Staphylococcus warneri L37603] gi|239598046|gb|EEQ80541.1| deoxyribodipyrimidine photo-lyase [Staphylococcus warneri L37603] Length = 456 Score = 284 bits (726), Expect = 2e-74, Method: Composition-based stats. Identities = 143/479 (29%), Positives = 219/479 (45%), Gaps = 31/479 (6%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M V ++ L RI N L C+ D V I E++ + ++ F + +L Sbjct: 1 MKVGVI-LNRVFRIHHNPLLAYICNQLDTTDTCVLIIPKEKFG--DEAQLKASFYHGTLN 57 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQ---YEINEVRRDKLL 123 +L+ Y +N D ++L +C+ Q++ K+ Y Sbjct: 58 AFINTLN------HYQIQTNVIDY-DYLIEFCINQQLDKVVMASDIMSYHHESYDYPHQK 110 Query: 124 EKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIR 183 ++ + + P N+ + YKV+T F K ++Q + I Sbjct: 111 QRFHDAGIHVDALRVQHYFSPRKTFNNQGEPYKVFTSFYKKWRPYVMQRHRAHYELSDI- 169 Query: 184 LTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS 243 S I P Q D + E+ + F + Y R TS Sbjct: 170 -------SKIVEPAYAPTQINDSHSGLTEKEVQQQWQSFLNNDIQNYESNRAYLPEVLTS 222 Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCM 303 QLS L+ G++ Q +N L + + +S +++ ELI+REFY LM YP Sbjct: 223 QLSIALAYGLIDILQVFNDLLQGYE----SDESNYEAFIRELIFREFYYVLMTQYPETA- 277 Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363 + F I+W D WK G TG+PI+DAAM++LN G+MHNR+RM+T+ FL K Sbjct: 278 HQSFKEKYRNIDWVNDKQQFNKWKNGETGYPIVDAAMQELNQTGYMHNRMRMVTSQFLTK 337 Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423 DLL+DWR GE YF +L+D D ASN GWQW+ASTG D+VPYFR+FNP Q +RFD Sbjct: 338 DLLIDWRWGETYFKDKLIDYDNASNVHGWQWSASTGTDAVPYFRMFNPIKQSERFDQNAL 397 Query: 424 FIRHWLPELNNVPTQYIHAPHSW-----LDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477 +I+ WLP NNV + +H +L ++YP P+V+H + ++ + + Sbjct: 398 YIKQWLPTFNNVDSHLLHDTKKHMQLLKQQGIELGIDYPEPMVNHSDSRQRVMSLFKSL 456 >gi|149198712|ref|ZP_01875755.1| Deoxyribodipyrimidine photolyase [Lentisphaera araneosa HTCC2155] gi|149138148|gb|EDM26558.1| Deoxyribodipyrimidine photolyase [Lentisphaera araneosa HTCC2155] Length = 481 Score = 284 bits (726), Expect = 3e-74, Method: Composition-based stats. Identities = 110/484 (22%), Positives = 185/484 (38%), Gaps = 28/484 (5%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 +++VWL+ DLR+ D+ L AA S + ++ P +S +FIY SLL++ Sbjct: 4 INVVWLKRDLRLNDHACL-AAAEASKLPYLIIYCFEPRLINAPDVSENHLNFIYLSLLEM 62 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINE-VRRDKLLEKRL 127 QK L S S+E ++ +F ++++ +RD+ + Sbjct: 63 QKKLEPFNRPLYILHAS----SVEAFAYIQKNYQIKNIFAHQEHGTTRTWKRDRQIIDFC 118 Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187 I + I K + N+++ + P Sbjct: 119 WQEKIEL-----LEAEHSGIKRGIQNRDKWDKAWFSWHSANIIRNSYSKGHFTFDQDLFP 173 Query: 188 VTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPA--IQGTSQL 245 ++ P+ + GE A L F ++ Y P+ + +L Sbjct: 174 A--VFYFKYHSKPY--SKNLQNPGEDTAHRYLTSFLADRGKDYHRFISKPSKSRKSCGRL 229 Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305 SPYL+ G +S RQ + +KE K L + WR + S Sbjct: 230 SPYLAWGNISSRQVYQFIKE--SPKYKDNKRAYSGLLTRIKWRSHFIQKFEVECSY-EYL 286 Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365 E + N ++ ++AW++G TG+P++DA MR L+ GW++ R+R + SF L Sbjct: 287 YLNKGYELLSLNFNAEHIRAWEKGKTGYPLVDACMRCLHATGWINFRMRAMLTSFFCHHL 346 Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425 DWR G + LD + + +Q G + RI+NP Q DP G FI Sbjct: 347 AQDWRDGVYHLAKLFLDYEPGIHFPQFQMQ--AGTTGINTVRIYNPIKQSMDNDPHGEFI 404 Query: 426 RHWLPELNNVPTQYIHAPHSWLDKNDLSLN------YPLPIVDHKKACHHTLNQYYAAKK 479 R W+PEL + IH P YP PI+D K+ ++ + + Sbjct: 405 RQWVPELKELNNNEIHEPWKIELMEAKMKGYANLHLYPDPIIDIKETYRLARDRIWGLRT 464 Query: 480 QSLL 483 L+ Sbjct: 465 NPLV 468 >gi|27467381|ref|NP_764018.1| putative deoxyribodipyrimidine photolyase [Staphylococcus epidermidis ATCC 12228] gi|27314924|gb|AAO04060.1|AE016745_159 putative deoxyribodipyrimidine photolyase [Staphylococcus epidermidis ATCC 12228] Length = 457 Score = 284 bits (726), Expect = 3e-74, Method: Composition-based stats. Identities = 141/484 (29%), Positives = 233/484 (48%), Gaps = 41/484 (8%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M++ ++ L R+ +N N ++ FI E++ + Q + Y S+ Sbjct: 1 MAIGVI-LNRVFRLNNNPLFDYIYSNKESINHCYFIIPTEEFEEEAKKKAQ--YYYGSIQ 57 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKL--------FYNRQYEINEVR 118 + L + I F S + L +C +Q + K+ +++ +Y+I R Sbjct: 58 KFMYELQRYDI-------EPFLMSYDKLIDFCKKQAIDKVVVAGDIMSYHHEEYDILHQR 110 Query: 119 RDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLP 178 ++ Q + S + P N + YKV+T F + L+ D Sbjct: 111 -----KRFKQANIQVISLRANHYFNPRKTYNKQGEPYKVFTSFYRKWRPYLMIRDEYDYH 165 Query: 179 VPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPA 238 + I + V S DY I E++ + +F + + Y E R+ Sbjct: 166 LEDI--SKVVVKSQHKIKEDYHSYGIS------ERDVQNRWSEFLSQDIENYKENREYLP 217 Query: 239 IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFY 298 TSQLS YL+ G++ Q +N L + + K + +++ ELI+REFY LM Y Sbjct: 218 EVLTSQLSIYLAYGMIDIIQVFNDLLQNY----DKNEQNYETFIRELIFREFYYVLMTNY 273 Query: 299 PSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITA 358 P F ++++W+ + + WK G TGFPIIDAAM +L T G+MHNR+RM+ + Sbjct: 274 PETA-HVAFKEKYQQLKWSYNEENFKLWKDGNTGFPIIDAAMEELKTTGFMHNRMRMVVS 332 Query: 359 SFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRF 418 FL KDL +DW GE +F +L+D ASN GWQW+ASTG D+VPYFR+FNP Q +RF Sbjct: 333 QFLTKDLFIDWIWGESFFKQKLIDYYAASNVHGWQWSASTGTDAVPYFRMFNPIRQSERF 392 Query: 419 DPQGTFIRHWLPELNNVPTQYIHAPHSWLDK-----NDLSLNYPLPIVDHKKACHHTLNQ 473 D +I+ ++P LN V +Y+H H + + ++ +YP ++DHK++ +++ Sbjct: 393 DNNARYIKTYIPRLNQVDAKYLHDTHKFEQQIKGQGVEIGKDYPKQMIDHKESRQRVMSE 452 Query: 474 YYAA 477 + A Sbjct: 453 FKAL 456 >gi|219116188|ref|XP_002178889.1| cry-dash from the cryptochrome/photolyase family [Phaeodactylum tricornutum CCAP 1055/1] gi|217409656|gb|EEC49587.1| cry-dash from the cryptochrome/photolyase family [Phaeodactylum tricornutum CCAP 1055/1] Length = 610 Score = 283 bits (725), Expect = 3e-74, Method: Composition-based stats. Identities = 118/519 (22%), Positives = 201/519 (38%), Gaps = 71/519 (13%) Query: 2 KATTAMSVHLV--WLRN-DLRITDNKALYAACHNSDAKVIAVFIATP------------- 45 KAT+ S +V W R+ DLR+ DN AL + +++ + VF Sbjct: 42 KATSRASSQVVLHWFRHGDLRLLDNPALIHSSKTAES-CVPVFCFDDSVYGNDNRTPDTR 100 Query: 46 ----EQWRQHGISARQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQ 101 Q R++ F+ S+ +++SL +G +D++ Sbjct: 101 APHSNDRGQLKCGPRRAQFVLDSVQDLRRSLQSRGSALYVAHGKPAQVFQRLVDAWPAVP 160 Query: 102 RVTK---------LFYNRQYEINEVRRDKLLEKRLQHR---VICKSFDDSVLLPPGSIL- 148 + R+ E + ++ L+ R + S + + Sbjct: 161 AADTAAPNGSLLTIVCQREVVREENDAVRAVQSVLRRRFPQAKVQQIWGSTMYELDDLPF 220 Query: 149 -NHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPM 207 M +TPFR + +N +P P N P + + + Sbjct: 221 ATDLANMPDTFTPFRNKVEKNCQIGTPLPVPKQ------LSLPENFPSALKQGLEYLPTL 274 Query: 208 FPIGEQNAL-HILRKF---------------CKEKVYYYVEQRD-IPAIQGTSQLSPYLS 250 +G +A + + + Y E R+ + +++ SP+L+ Sbjct: 275 KELGYTDAQIQQVETHDERGVLHFMVAKQPDSHDCLKDYFETRNGMLGPNYSTKFSPWLA 334 Query: 251 IGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPW 310 G +SPR + ++ + + + + EL+WR+F + + Sbjct: 335 HGNVSPRYVAAQCRKYEEERV--ENKSTYWVVFELLWRDFCKFFATKHGDAIFYPYGTTE 392 Query: 311 T--EKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVD 368 W+ LQAW++G TG+P++DA MR+L G+M NR R ASFL +L D Sbjct: 393 RTDRHKPWSTFGRNLQAWQEGRTGYPLVDANMRELVATGFMSNRGRQNVASFLAINLNHD 452 Query: 369 WRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHW 428 WR G ++F S LLD D+ SN W AA + FN + Q K +D G ++RHW Sbjct: 453 WRCGGDFFESHLLDYDVYSNWVNWCAAAGMTGGRLNR---FNISKQSKDYDQHGDYVRHW 509 Query: 429 LPELNNVPTQYIHAPHSWLD------KNDLSLNYPLPIV 461 LPEL VP +++H P + L ++YP PIV Sbjct: 510 LPELAKVPNEFVHEPWKMTSFQQMEYECKLGVDYPNPIV 548 >gi|329896420|ref|ZP_08271519.1| Deoxyribodipyrimidine photolyase/cryptochrome family protein [gamma proteobacterium IMCC3088] gi|328921840|gb|EGG29211.1| Deoxyribodipyrimidine photolyase/cryptochrome family protein [gamma proteobacterium IMCC3088] Length = 499 Score = 283 bits (725), Expect = 3e-74, Method: Composition-based stats. Identities = 111/490 (22%), Positives = 191/490 (38%), Gaps = 27/490 (5%) Query: 1 MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHF 60 M A + +VW + DLR+ D+ L AA + + +++ PE S R F Sbjct: 1 MSANEG--LQVVWFKRDLRLEDHAPLAAAA--NGKPTLLLYVFEPELMNDPHYSERHWRF 56 Query: 61 IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEIN-EVRR 119 + SLL++ L + S +E LD+ ++ L + + + R Sbjct: 57 VTQSLLEMNGRLEPLNQRVYILKGS----MLEVLDAIHAHNPISNLLSHEETGLRVTYER 112 Query: 120 DKLLEKRL-QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLP 178 DK + QHRV + + + + + + + Q L + + L Sbjct: 113 DKAISTWCRQHRVNWQEYQSN------GVKRGRYSRDGWAHDWHRVMSQPLAEPEWAQL- 165 Query: 179 VPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQ-NALHILRKFCKEKVYYYVEQRDIP 237 +PA ++ + + DP +G A H L F E+ Y + P Sbjct: 166 LPAEDQQRCLSDYVMESALLKAWSTRDPSHQLGGVGAAQHALESFFDERGKIYHKALSKP 225 Query: 238 --AIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLM 295 + + S+LSPYL+ G LS RQ + RL+ E A + L W + Sbjct: 226 LLSRKHCSRLSPYLAWGNLSIRQVYQRLQAERGRSGWGRALSA--LNSRLHWHCHFIQKF 283 Query: 296 AFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRM 355 + +P + + + QAW G TG P +DA +R L G++H R R Sbjct: 284 ESEDRIEF-EPMNFGYHQFQDDHSLANEQAWATGNTGIPYLDACLRCLQNTGYLHFRGRA 342 Query: 356 ITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQG 415 + S L + W+ LD + + Q + RI+NP QG Sbjct: 343 MIVSALCHLMQGRWQFAARQLAQWFLDFEPGIHYAQIQMQVGLT--GINTLRIYNPVKQG 400 Query: 416 KRFDPQGTFIRHWLPELNNVPTQYIHAPHSW--LDKNDLSLNYPLPIVDHKKACHHTLNQ 473 DP FI+ W+PEL+ +P +H P +++ + +NYP P++D +A Sbjct: 401 LDHDPDAVFIKKWVPELSELPVPLVHTPWELGPIERACMDMNYPDPVIDIAQAHKAARAL 460 Query: 474 YYAAKKQSLL 483 Y+ ++ L+ Sbjct: 461 YWDRRQNPLV 470 >gi|332211183|ref|XP_003254698.1| PREDICTED: LOW QUALITY PROTEIN: cryptochrome-2-like [Nomascus leucogenys] Length = 543 Score = 283 bits (725), Expect = 3e-74, Method: Composition-based stats. Identities = 104/425 (24%), Positives = 159/425 (37%), Gaps = 25/425 (5%) Query: 19 RITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQKSLSQKGIV 78 RI L AA + V V+I P + + F+ SL + SL + Sbjct: 56 RIHKQPTLLAAVRGARC-VRCVYILDPWFAASSSVGINRWRFLLQSLEDLDTSLRKLNSR 114 Query: 79 FQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH-RVICKSFD 137 + + + VT+L + E RD + K + V + + Sbjct: 115 LFVVRG----QPADVFPRLFKEWGVTRLTFEYDSEPFGKERDAAIMKMAKEAGVEVVTEN 170 Query: 138 DSVLLPPGSILNHALQ-MYKVYTPFRKALIQNLVQADL-------RSLPVPAIRLTGPVT 189 L I+ Q Y F+ + + + + A Sbjct: 171 SHTLYDLDRIIELNGQKPPLTYKRFQAIISRMELPKKPVGSVTSQQMESCRAEIQENHDE 230 Query: 190 PSNIPRFFDYPF--QAIDPM-FPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGT---- 242 +P + F + + P + GE AL L K + K + +R + Sbjct: 231 TYGVPSLEELGFPTEGLGPAVWQGGETEALARLDKHLERKAWVANYERPRMSANSLLASP 290 Query: 243 SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVC 302 + LSPYL G LS R + RL + + + + + S +L+WREF+ P Sbjct: 291 TGLSPYLRFGCLSCRLFYYRLWDLYKKVK-RNSTPPLSLFGQLLWREFFYTAATNNPRFD 349 Query: 303 MGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLV 362 + P +I W+++ L W +G TGFP IDA M QL GW+H+ R A FL Sbjct: 350 RMEG-NPICIQIPWDRNPEALAKWAEGKTGFPWIDAIMTQLRQEGWIHHLARHAVACFLT 408 Query: 363 K-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQ 421 + DL V W G F LLD D + N G W W S +F + P G+R DP Sbjct: 409 RGDLWVSWESGVRVFDELLLDADFSVNAGSWMW-LSCSAFFQQFFHCYCPVGFGRRTDPS 467 Query: 422 GTFIR 426 G +IR Sbjct: 468 GDYIR 472 >gi|86140426|ref|ZP_01058985.1| probable bacterial cryptochrome [Leeuwenhoekiella blandensis MED217] gi|85832368|gb|EAQ50817.1| probable bacterial cryptochrome [Leeuwenhoekiella blandensis MED217] Length = 432 Score = 283 bits (724), Expect = 4e-74, Method: Composition-based stats. Identities = 110/437 (25%), Positives = 203/437 (46%), Gaps = 26/437 (5%) Query: 10 HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGIS-----ARQSHFIYAS 64 +LVW RNDLR+ DN +L+ A N++ + AV+ P Q+++ ++ F+ + Sbjct: 3 NLVWFRNDLRVKDNTSLFKASKNAN-LLAAVYCFDPRQFQEDQFGFKKTERFRAQFLIET 61 Query: 65 LLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLE 124 + ++++ L++ I + + + L + ++ +LF+ ++ E + ++ Sbjct: 62 VTELREHLAELNIPIFVYN----EQPEDILPQLIERLQIDQLFFQEEWTSEEQEVTRKVK 117 Query: 125 KRLQHRVICKSFDDSVLLPPGSILNHALQ-MYKVYTPFRKALIQNLVQADLRSLPVPAIR 183 + V D L+ P + +++ + V+T +RK +NL S+ + Sbjct: 118 ESCSASVKFTESYDQFLIHPEDLPYKSIEAIPNVFTQWRKKCEKNLNIRKEVSITEFP-Q 176 Query: 184 LTGPVTPSNIPRFFDYPFQAIDPM------FPIGEQNALHILRKFCKE--KVYYYVEQRD 235 ++IP D ++ P F GEQ AL+ + + + K+ Y + R+ Sbjct: 177 TNFEENSTSIPTLQDLNLESFTPDHRSAFPFKGGEQQALNRIEDYFWQTRKLAVYKKTRN 236 Query: 236 -IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHL 294 + +S+LS +L+ G +S R + ++K + + EL+WR+F++++ Sbjct: 237 GLTGKNYSSKLSAWLANGGISARTIYWKIKAFEQE--ETKNESTYWLFFELMWRDFFKYI 294 Query: 295 MAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLR 354 Y I + +W + + W G T + ++A M+++ GWM NR R Sbjct: 295 SLKYGDQIFKIGGILEKD-YDWKTNKAAKKEWINGQTKYDFVNANMKEIAATGWMSNRGR 353 Query: 355 MITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQ 414 AS+ K+L DWRIG YF S L+D D+ SN G W + + GND P R FN Q Sbjct: 354 QNVASYWAKELQQDWRIGAAYFESMLIDYDVHSNYGNWMYNSGVGND--PRDRKFNIKSQ 411 Query: 415 GKRFDPQGTFIRHWLPE 431 +R+D G F R WL E Sbjct: 412 AERYDGDGKFRRLWLQE 428 >gi|221134514|ref|ZP_03560819.1| deoxyribodipyrimidine photolyase [Glaciecola sp. HTCC2999] Length = 501 Score = 282 bits (722), Expect = 7e-74, Method: Composition-based stats. Identities = 108/488 (22%), Positives = 204/488 (41%), Gaps = 31/488 (6%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 +VW + DLR+ D+ L HN ++ ++I P+ S R F+ SL+ +Q Sbjct: 7 IVWFKRDLRLRDHAPLCRVMHN-PRPILLLYIFEPDLIHDPHYSERHWRFVVQSLVDLQA 65 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVR-RDKLLEKRLQH 129 LS+ FQ D+ Q + ++ + + I RD+ +++ Sbjct: 66 QLSE----FQTQVLVLQGAVQTVFDTLLSQCDIGNVYSHEEIGIELTYVRDRAMQQY--- 118 Query: 130 RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQ-ADLRSLPV----PAIRL 184 P S++ L + ++ + +++ DL ++P +L Sbjct: 119 ---FHQHHIKWTETPYSVVRRGLNHRQDWSKYWHEMMEKPCDDPDLAAIPFVSQTMVEQL 175 Query: 185 TGPVTPSNIPRFFDYPFQAIDPMFP-IGEQNALHILRKFCKEKVYYYVEQRDIP--AIQG 241 T + P F GE+ A H F ++ Y P + + Sbjct: 176 THQALAIQDIELPTPQWSESHPNFQIGGEKRAWHTYYSFLDQRGKSYARHISSPELSRKS 235 Query: 242 TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSV 301 ++LSPY++ G ++ +Q + +L K + ++ L W + ++ Sbjct: 236 CTRLSPYIAWGNITIKQTYQKLDTLNEADYQGWKRALSAMVSRLHWHCHFIQKFESECAM 295 Query: 302 CM---GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITA 358 M + + +I+ + S L+AWK G TG PI+DA MR + G+++ R+R + Sbjct: 296 EMRPVNHAYQAYPYEIDQDVISRRLKAWKTGTTGIPIVDANMRAVIATGYINFRMRAMLV 355 Query: 359 SFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRF 418 S L +DWR+G ++ +Q LD + + +Q G R++NP Q + Sbjct: 356 SVLSHHFNLDWRLGVKHLAAQFLDFEPGIHYPQFQMQ--AGVTGTNTIRLYNPIKQSQEK 413 Query: 419 DPQGTFIRHWLPELNNVPTQYIHAPH--SWLDKNDLSLN----YPLPIVDHKKACHHTLN 472 DPQG FI+ W+PEL P +H P S +++ ++ YP P+VD + A + Sbjct: 414 DPQGRFIKQWVPELREYPDDMVHTPWAISPMERQLFGIDEAGEYPTPVVDIEDAAKMARD 473 Query: 473 QYYAAKKQ 480 + ++ +K+ Sbjct: 474 RLWSFQKR 481 >gi|57866289|ref|YP_187945.1| deoxyribodipyrimidine photolyase [Staphylococcus epidermidis RP62A] gi|251810120|ref|ZP_04824593.1| deoxyribodipyrimidine photo-lyase [Staphylococcus epidermidis BCM-HMP0060] gi|282875733|ref|ZP_06284604.1| FAD binding domain of DNA photolyase [Staphylococcus epidermidis SK135] gi|293368145|ref|ZP_06614776.1| deoxyribodipyrimidine photo-lyase [Staphylococcus epidermidis M23864:W2(grey)] gi|57636947|gb|AAW53735.1| deoxyribodipyrimidine photolyase, putative [Staphylococcus epidermidis RP62A] gi|251806348|gb|EES59005.1| deoxyribodipyrimidine photo-lyase [Staphylococcus epidermidis BCM-HMP0060] gi|281295760|gb|EFA88283.1| FAD binding domain of DNA photolyase [Staphylococcus epidermidis SK135] gi|291317717|gb|EFE58132.1| deoxyribodipyrimidine photo-lyase [Staphylococcus epidermidis M23864:W2(grey)] gi|329723282|gb|EGG59812.1| FAD binding domain of DNA photolyase [Staphylococcus epidermidis VCU144] gi|329735614|gb|EGG71898.1| deoxyribodipyrimidine photo-lyase family protein [Staphylococcus epidermidis VCU045] Length = 457 Score = 282 bits (722), Expect = 8e-74, Method: Composition-based stats. Identities = 142/484 (29%), Positives = 234/484 (48%), Gaps = 41/484 (8%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M++ ++ L R+ +N N ++ FI E++ + Q + Y S+ Sbjct: 1 MAIGVI-LNRVFRLNNNPLFDYIYSNKESINHCYFIIPTEEFEEEAKKKAQ--YYYGSIQ 57 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKL--------FYNRQYEINEVR 118 + L + I F S + L +C +Q + K+ +++ +Y+I R Sbjct: 58 KFMYELQRYDI-------EPFLMSYDKLIDFCKKQAIDKVVVAGDIMSYHHEEYDILHQR 110 Query: 119 RDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLP 178 ++ Q + S + P N + YKV+T F + L+ D Sbjct: 111 -----KRFKQANIQVISLRANHYFNPRKTHNKQGEPYKVFTSFYRKWRPYLMIRDEYDYH 165 Query: 179 VPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPA 238 + I + V S DY I E++ + +F + + Y E R+ Sbjct: 166 LEDI--SKVVVKSQHKIKEDYHSYGIS------ERDVQNRWSEFLSQDIENYKENREYLP 217 Query: 239 IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFY 298 TSQLS YL+ G++ Q +N L + + K + +++ ELI+REFY LM Y Sbjct: 218 EVLTSQLSIYLAYGMIDIIQVFNDLLQNY----DKNEQNYETFIRELIFREFYYVLMTNY 273 Query: 299 PSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITA 358 P F ++++W+ + + WK G TGFPIIDAAM +L T G+MHNR+RM+ + Sbjct: 274 PETA-HVAFKEKYQQLKWSYNEENFKLWKDGNTGFPIIDAAMEELKTTGFMHNRMRMVVS 332 Query: 359 SFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRF 418 FL KDL +DW GE +F +L+D D ASN GWQW+ASTG D+VPYFR+FNP Q +RF Sbjct: 333 QFLTKDLFIDWIWGESFFKQKLIDYDAASNVHGWQWSASTGTDAVPYFRMFNPIRQSERF 392 Query: 419 DPQGTFIRHWLPELNNVPTQYIHAPHSWLDK-----NDLSLNYPLPIVDHKKACHHTLNQ 473 D +I+ ++P LN V +Y+H H + + ++ +YP ++DHK++ +++ Sbjct: 393 DNNARYIKTYIPRLNQVDAKYLHDTHKFEQQIKGQGVEIGKDYPKQMIDHKESRQRVMSE 452 Query: 474 YYAA 477 + A Sbjct: 453 FKAL 456 >gi|322698418|gb|EFY90188.1| cryptochrome-2 [Metarhizium acridum CQMa 102] Length = 604 Score = 282 bits (722), Expect = 9e-74, Method: Composition-based stats. Identities = 126/545 (23%), Positives = 192/545 (35%), Gaps = 89/545 (16%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 + W R DLR+ D+ AL AA + +F P + + F+ S+ ++ Sbjct: 7 VYWFRTDLRLHDSPALKAALDLEPDVLWPIFTWDPYYVYRARGGTNRWQFL--SITKLNP 64 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH- 129 K V + + +VT L + + + +RD ++ K + Sbjct: 65 --KSKLFVLR-------EAPQTLFPKLLKAWKVTHLVFEKDTDAYARQRDDVVAKAAKEA 115 Query: 130 RVICKSFDDSVLLPPGSIL-NHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIR----- 183 V L I+ +H + T A + + P Sbjct: 116 GVEVVIRSGRTLWDSDEIVAHHDGKPTMSMTQLLSAAKKVGQVPRPIAAPKGLPDPGDMP 175 Query: 184 ----------------------------LTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNA 215 + GP I + F A + GE A Sbjct: 176 LDFEQHVPSNAPDVNAQAREKKDTAYKSIAGPKGDFAIETLEELGFPAATTPYRGGESIA 235 Query: 216 LHILRKFCKEKVYY--YVEQRDIPAI---QGTSQLSPYLSIGVLSPRQCWNRLKEEFVDL 270 L L + + K Y + + + PA Q T+ LSP+L G LS R+ + R+++ Sbjct: 236 LKDLAEIIENKKYTATFEKPKTSPAQFEPQSTTLLSPFLHFGALSVREFYWRVQDVVEAY 295 Query: 271 LIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEW-------------- 316 + S +LI+R+ Y A + P+ I W Sbjct: 296 GKGASTPPASLTGQLIFRDMYFAAQAAVGAKFTQTAGNPYCRFIPWHLPSERDSQTGLVT 355 Query: 317 -------NKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK-DLLVD 368 + Q WK+G TGFP IDA MRQL GWMH+ R A FL + VD Sbjct: 356 DKYKVDSDDAEKWFQRWKRGVTGFPWIDALMRQLVHTGWMHHLGRHSVACFLTRGGCYVD 415 Query: 369 WRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHW 428 W G E F LLD + A N G WQW S YFR ++P G+++D G IR W Sbjct: 416 WERGAEVFEVHLLDHEPACNAGNWQW-LSCTAFFSQYFRCYSPVSFGQKWDKNGDLIRKW 474 Query: 429 LPELNNVPTQYIHAPHSWLDKNDLSLN---------------YPLPIVDHKKACHHTLNQ 473 +PEL N+ ++YI+ P ++ YP P+ D K +N Sbjct: 475 VPELKNLDSKYIYEPWKAPIQDQKKAGVRVVGDGLDDQEQGTYPKPMFDFGKRRETCINA 534 Query: 474 YYAAK 478 A Sbjct: 535 MKIAY 539 >gi|242242053|ref|ZP_04796498.1| deoxyribodipyrimidine photo-lyase [Staphylococcus epidermidis W23144] gi|242234492|gb|EES36804.1| deoxyribodipyrimidine photo-lyase [Staphylococcus epidermidis W23144] Length = 457 Score = 281 bits (720), Expect = 1e-73, Method: Composition-based stats. Identities = 138/484 (28%), Positives = 234/484 (48%), Gaps = 41/484 (8%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M++ ++ L RI +N N ++ FI E++ + Q + Y S+ Sbjct: 1 MAIGVI-LNRVFRINNNPLFDYIYRNKESINQCYFIIPTEEFEEEAKKKAQ--YYYGSIQ 57 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKL--------FYNRQYEINEVR 118 + L + I F S + L +C +Q + K+ +++ +Y+I R Sbjct: 58 KFMYKLQRYDI-------EPFLMSYDKLIDFCKKQTIDKVVVAGDIMSYHHEEYDILHQR 110 Query: 119 RDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLP 178 ++ Q + + + P N + YKV+T F + L+ D Sbjct: 111 -----KRFKQADIQVITLRANHYFKPCKTHNKQGEPYKVFTSFYRKWRPYLMIRDEYDYH 165 Query: 179 VPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPA 238 + I + I + + I E++ + +F + + Y E R+ Sbjct: 166 LEDITKVAVKSQHKIKEDYH--------SYGISERDVQNRWSEFLSQDIENYKENREYLP 217 Query: 239 IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFY 298 TSQLS YL+ G++ Q +N L + + K + +++ ELI+REFY LM Y Sbjct: 218 EVLTSQLSIYLAYGMIDIIQVFNDLLQNY----DKNEQNYEAFIRELIFREFYYVLMTNY 273 Query: 299 PSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITA 358 P F ++++W+ + + WK G TGFPIIDAAM +L T G+MHNR+RM+ + Sbjct: 274 PETA-HVAFKEKYQQLKWSYNEENFKLWKDGNTGFPIIDAAMEELKTTGFMHNRMRMVVS 332 Query: 359 SFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRF 418 FL KDL +DW GE +F +L+D D ASN GWQW+ASTG D+VPYFR+FNP Q +RF Sbjct: 333 QFLTKDLFIDWIWGESFFKQKLIDYDAASNVHGWQWSASTGTDAVPYFRMFNPIRQSERF 392 Query: 419 DPQGTFIRHWLPELNNVPTQYIHAPHSWLDK-----NDLSLNYPLPIVDHKKACHHTLNQ 473 D +I+ ++P+LN + +Y+H H + + ++ +YP ++DHK++ +++ Sbjct: 393 DNNARYIKTYIPKLNQIDAKYLHDTHKFEQQIKGQGVEIGKDYPKQMIDHKESRQRVMSE 452 Query: 474 YYAA 477 + A Sbjct: 453 FKAL 456 >gi|206900389|ref|YP_002249959.1| deoxyribodipyrimidine photolyase [Dictyoglomus thermophilum H-6-12] gi|206739492|gb|ACI18550.1| deoxyribodipyrimidine photolyase [Dictyoglomus thermophilum H-6-12] Length = 433 Score = 281 bits (719), Expect = 2e-73, Method: Composition-based stats. Identities = 140/468 (29%), Positives = 217/468 (46%), Gaps = 42/468 (8%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 L DLRI DN A AC +S +++ ++I +H + F+ ++L V Sbjct: 6 LFLFYRDLRIKDNTAFIKACEDSK-EIVPLYILE-----RHNFNKYSFEFVISALGYVNF 59 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130 L++ G + +++ E+L + ++ ++ Y + ++KLL + + Sbjct: 60 ELNKLGSFLYLVERGFNEETFEFLRE---KIGFDAIYLSKDYLWSFEEKEKLLRNFCREK 116 Query: 131 VI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189 I + F+ + L+ P I KV+TPF K L ++R +L P+ Sbjct: 117 GIELRFFEGNFLVSPNLI-----SQTKVFTPFFKKWSAYL--GEIRRKDFNFSKLNTPIL 169 Query: 190 PSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYL 249 + F++ + + G L F Y E+RD+ GTS+LS Y+ Sbjct: 170 ELSKFEDFEFSKKVRLDLIEWGF----KRLESF---DFDVYDEKRDLLYCDGTSKLSAYI 222 Query: 250 SIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIP 309 + GV+S + ++K S + +L EL +REF+ H+ +P F Sbjct: 223 NYGVISIYDVYEKVK----------NSKSSQFLRELAFREFWYHIRMHFPE-TRNLEFQE 271 Query: 310 WTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDW 369 T IEW ++ ++ TG+PI+DA +R L T GW+HNRLRMI ASF K LL DW Sbjct: 272 KTRNIEWLYREDWIRKFENAETGYPIVDAGIRCLKTEGWLHNRLRMILASFFTKTLLHDW 331 Query: 370 RIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWL 429 RIGEE+F L+D D N WQW+AS G D P RIFNP IQ +FDP FI+ +L Sbjct: 332 RIGEEFFKDYLVDYDEVLNIQNWQWSASVGADPRP-LRIFNPMIQSSKFDPYCEFIKKYL 390 Query: 430 PELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477 PEL + + IH P + K Y P+VD + +Y Sbjct: 391 PELKDEDCRKIHDPLKYKLK------YYTPMVDFYAQKELAIRKYKKI 432 >gi|254421675|ref|ZP_05035393.1| deoxyribodipyrimidine photolyase family [Synechococcus sp. PCC 7335] gi|196189164|gb|EDX84128.1| deoxyribodipyrimidine photolyase family [Synechococcus sp. PCC 7335] Length = 550 Score = 281 bits (719), Expect = 2e-73, Method: Composition-based stats. Identities = 122/498 (24%), Positives = 201/498 (40%), Gaps = 51/498 (10%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M+ +VW R DLRI D++ LY A ++ VF+ + + + F+ + L Sbjct: 1 MNRTVVWFRRDLRIADHEPLYRAARRG--LIVPVFVFDRALLKHPETGSGRVRFMLSCLA 58 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYE-INEVRRDKLLEK 125 + + L +G D +E L + + ++ YE I RD L + Sbjct: 59 ALDEDLRSRGGRLILRSG----DPVEVLPKLVRETQSDGIYSYIDYERIYGRVRDARLNQ 114 Query: 126 RL-QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL 184 L + + + F+ V P + L V++ P I + Sbjct: 115 ALTREGLKVRWFE-----------PLGGTPDLVPYPDYRQLWYQSVRSPQIPTP-QKIEV 162 Query: 185 TGPVTPSNIPRFFDYPFQAIDPMFP-IGEQNALHILRKFCKEKVY-YYVEQRDIPAIQGT 242 ++ +P + + P G A +L F E+ Y Q P+ T Sbjct: 163 PPDISSDELPSLEAVGHISDGMLVPQGGTIEARKLLNLFFDERKAQRYYWQLSYPSANAT 222 Query: 243 SQLSPYLSIGVLSPRQCWNRLKEEFVDLL----IKPKSGAFSWLNELIWREFYRHLMAFY 298 S LSPYL G +S R+C + + D + + A L+ L W + + Sbjct: 223 SGLSPYLKYGAISIRECAQTIWDRQADPRWWTDKRVERSAHQLLSRLRWGSGFTQRFRYL 282 Query: 299 PSVCMGKPFIPW-------------TEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNT 345 P + + + P+ + W+ + +AWK G TG+PIIDAA R L Sbjct: 283 PQLEVRSLYTPFETGPSDSLLPAEELQNGGWDDNFEHYEAWKNGETGYPIIDAAARCLKE 342 Query: 346 I-GW--MHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGW-QWAASTGND 401 GW ++ R+R I ASFL + +DWR G +FM L+DGD ++ W Q A T Sbjct: 343 TGGWLALNFRVRAIYASFLCNLIGMDWRYGALHFMRYLIDGDCPIDHYQWAQQAGVTHCL 402 Query: 402 SVPYFRIFNPTIQG-KRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPI 460 + + RI+NP + R DPQG F+ WLPEL ++ + + P YP PI Sbjct: 403 NKAWIRIYNPQQEAIDRCDPQGRFVYRWLPELRHLKPEQLGTPPKV-------KGYPQPI 455 Query: 461 VDHKKACHHTLNQYYAAK 478 +++ +A + + Sbjct: 456 LNYAQARDRRTKRIDDLR 473 >gi|329736816|gb|EGG73081.1| deoxyribodipyrimidine photo-lyase family protein [Staphylococcus epidermidis VCU028] Length = 457 Score = 281 bits (719), Expect = 2e-73, Method: Composition-based stats. Identities = 142/484 (29%), Positives = 233/484 (48%), Gaps = 41/484 (8%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M++ ++ L R+ +N N ++ FI E++ + Q + Y S+ Sbjct: 1 MAIGVI-LNRVFRLNNNPLFDYIYSNKESINHCYFIIPTEEFEEEAKKKAQ--YYYGSIQ 57 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKL--------FYNRQYEINEVR 118 + L + I F S + L +C +Q + K+ +++ +Y+I R Sbjct: 58 KFMYELQRYDI-------EPFLMSYDKLIDFCKKQAIDKVVVAGDIMSYHHEEYDILHQR 110 Query: 119 RDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLP 178 ++ Q + S + P N + YKV+T F + L+ D Sbjct: 111 -----KRFKQANIQVISLRANHYFNPRKTHNKQGEPYKVFTSFYRKWRPYLMIRDEYDYH 165 Query: 179 VPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPA 238 + I + V S DY I E++ + +F + + Y E R+ Sbjct: 166 LEDI--SKVVVKSQHKIKEDYHSYGIS------ERDVQNRWSEFLSQDIENYKENREYLP 217 Query: 239 IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFY 298 TSQLS YL+ G++ Q +N L + + K + +++ ELI+REFY LM Y Sbjct: 218 EVLTSQLSIYLAYGMIDIIQVFNDLLQNY----DKNEQNYETFIRELIFREFYYVLMTNY 273 Query: 299 PSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITA 358 P F ++++W + + WK G TGFPIIDAAM +L T G+MHNR+RM+ + Sbjct: 274 PETA-HVAFKEKYQQLKWFYNEENFKLWKDGNTGFPIIDAAMEELKTTGFMHNRMRMVVS 332 Query: 359 SFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRF 418 FL KDL +DW GE +F +L+D D ASN GWQW+ASTG D+VPYFR+FNP Q +RF Sbjct: 333 QFLTKDLFIDWIWGESFFKQKLIDYDAASNVHGWQWSASTGTDAVPYFRMFNPIRQSERF 392 Query: 419 DPQGTFIRHWLPELNNVPTQYIHAPHSWLDK-----NDLSLNYPLPIVDHKKACHHTLNQ 473 D +I+ ++P LN V +Y+H H + + ++ +YP ++DHK++ +++ Sbjct: 393 DNNARYIKTYIPRLNQVDAKYLHDTHKFEQQIKGQGVEIGKDYPKQMIDHKESRQRVMSE 452 Query: 474 YYAA 477 + A Sbjct: 453 FKAL 456 >gi|317036499|ref|XP_001397458.2| DNA photolyase [Aspergillus niger CBS 513.88] Length = 641 Score = 281 bits (719), Expect = 2e-73, Method: Composition-based stats. Identities = 125/580 (21%), Positives = 200/580 (34%), Gaps = 103/580 (17%) Query: 1 MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHF 60 M +A +V + W R DLR+ DN AL AA + + I +F P Q + + F Sbjct: 1 MPPQSAPTV-IFWHRTDLRLHDNPALQAALSLNPSTFIPIFTWDPHYAYQVRVGPNRWRF 59 Query: 61 IYASLLQVQKSLSQKG--IVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVR 118 + + +S + + + T L + + Sbjct: 60 LLECQNDLSQSYRKLNPKQKLWVVR----EAPQTVFPKLFKAWGATHLVFESDTDGYARE 115 Query: 119 RDKLLEKRLQHRVICKSFD-DSVLLPPGSILNHA-LQMYKVYTPFRKALIQNLVQADLRS 176 RD+ + K + L ++ + KA+ Q R Sbjct: 116 RDETIRKLANEAGVEVIVKSGRTLFDSDEVVKQNKGEPTMSIHQVEKAIEQINNGVPDRP 175 Query: 177 LPVPAI-----------------------------------------RLTGPVTPSNIPR 195 + P + GP +IP Sbjct: 176 VDAPERIPDPLGEEKMRDISGLEHEVPDHEDDINAAHRTKHNDNQYNNIAGPKGDFSIPT 235 Query: 196 FFDYPFQAIDPMFP--IGEQNALHILRKFCKEKVYY---YVEQRDIPAI---QGTSQLSP 247 + P GE AL +L + ++ Y + + + PA Q T+ LSP Sbjct: 236 LDELSIDPSQATSPHHGGESIALEMLTTYLQQNEDYIATFEKPKTSPAAFHPQATTLLSP 295 Query: 248 YLSIGVLSPRQCWNRLKEEFVDLLIKPKSG---AFSWLNELIWREFYRHLMAFYPSVCMG 304 +L G LS R+ W+ +++ K + +L++RE + A V Sbjct: 296 HLHFGSLSVRKFWHDVQDTLQQRESAHKPTSDLPTNLPGQLLFREMFFAAQAALGPVYAQ 355 Query: 305 KPFIPWTEKIEW----NKDSH-----------------LLQAWKQGYTGFPIIDAAMRQL 343 + W N D + WK+G TGFP IDA MRQL Sbjct: 356 TRGNKIVRFVPWHLQSNHDKETGLVDRTYTVDDEQAEVWFRRWKEGRTGFPWIDALMRQL 415 Query: 344 NTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDS 402 GW+H+ R A FL + V W G E F L+D + ASN G W W + T + Sbjct: 416 KNEGWIHHLGRHSVACFLTRGGCYVHWERGAEVFEEWLIDHETASNVGNWMWLSCTAFFT 475 Query: 403 VPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLD------KNDLSLN- 455 Y R ++P GK++DP+G FIRH++PEL + +YI+ P K ++ + Sbjct: 476 Q-YNRCYSPVAFGKKWDPEGRFIRHYIPELEHYDKKYIYEPWKAPLEDQKRWKCRVTGDG 534 Query: 456 ------------YPLPIVDHKKACHHTLNQYYAAKKQSLL 483 YP P+ D + + Q A + L+ Sbjct: 535 MVEKDEETGLRAYPEPMFDFDERRQTCIAQMKEAYEVHLM 574 >gi|303279002|ref|XP_003058794.1| predicted protein [Micromonas pusilla CCMP1545] gi|226459954|gb|EEH57249.1| predicted protein [Micromonas pusilla CCMP1545] Length = 527 Score = 281 bits (718), Expect = 2e-73, Method: Composition-based stats. Identities = 124/533 (23%), Positives = 209/533 (39%), Gaps = 71/533 (13%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 +VW R DLR+ DN AL+AA V+A ++ P + + +++ +L + + Sbjct: 3 VVWFRQDLRVRDNPALHAAARTG-RPVVAAYVWCPREEGRWPTGGAARVWLHHALDGLTR 61 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH- 129 +L++ + + S E L ++ NR YE ++ RD EK L Sbjct: 62 TLTRTYGAVLVLRDATRTSSFEELRDVARACGAKDVYANRVYEPWKIARDDTCEKALASE 121 Query: 130 -RVICKSFDDSVLLPPGSILNHALQMYKVYTPF-----------------------RKAL 165 + +SF+ VL P A + + Sbjct: 122 CGIRYRSFNAGVLYEPWDARPDATDDACWNSGYGSVRFFLRACAALGEPPPPLPAPASMR 181 Query: 166 IQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKE 225 + V+ RS+ + ++ L D+ I + GE A LR F E Sbjct: 182 ARLPVERRPRSVALESLGLAKMPRRRGGGGVIDW-AAGIRDAWTFGEDGADASLRAFLAE 240 Query: 226 KVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNEL 285 + ++ +R A T+++SPY+ G LS R+ + K V A +L L Sbjct: 241 GLAHFDAKR---ADATTARISPYVRHGELSVREVYRAAKAASVGSRKSQARSAGVFLRRL 297 Query: 286 IWREFYRHLMAFYPSVCMGKPFIPWTE----KIEWNKDS--------------------- 320 WR+ + +P + +P P + W+ D Sbjct: 298 AWRDLAYWSLWRFPHLA-DEPLRPQYASQWWAVPWDPDPRGRGDSVPRAVSIVRRRWDVF 356 Query: 321 ------HLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEE 374 L+AW++G TG+P++DAAMR+L G++ N +R + A FL++ L +DWR G+ Sbjct: 357 APCSNDANLRAWQRGITGYPLVDAAMRELWITGYIPNYMRHVVAGFLIEYLNIDWRHGQL 416 Query: 375 YFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNN 434 +F L+D D+A WQ +G D + + +P K DP G ++R W PEL+ Sbjct: 417 WFHDTLVDADVAIQGFMWQNGGHSGMDQWNF--VMHPVYAAKSADPDGEYVRRWCPELSK 474 Query: 435 VPTQYIHAPHSWLDKN------DLSLNYPLPI-VDHKKACHHTLNQYYAAKKQ 480 +P Y H P L YP + VD + A +L ++ Sbjct: 475 LPRDYAHCPWEAPATTLARAGVALGREYPKRVLVDLEGARLKSLRAVVEVRRA 527 >gi|326501158|dbj|BAJ98810.1| predicted protein [Hordeum vulgare subsp. vulgare] Length = 583 Score = 281 bits (718), Expect = 2e-73, Method: Composition-based stats. Identities = 111/372 (29%), Positives = 175/372 (47%), Gaps = 19/372 (5%) Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG- 186 ++ +SF+ +L P + + Q + ++ PF + LP I Sbjct: 4 SEGIVVQSFNADLLYDPWEVNDDDGQPFNMFMPFWNRCLSMPYDPPAPLLPPKRINSGDL 63 Query: 187 PVTPSNIPRFFDYPFQAIDPM----FPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGT 242 + PS+ F D + + + + G QNA L F + Y R T Sbjct: 64 SMCPSDDLIFEDESERGSNALLARAWSPGWQNADKALSAFLNGPLIDYSVNRKKADSANT 123 Query: 243 SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFS----WLNELIWREFYRHLMAFY 298 S LSPYL G LS R+ ++ ++ + + + A +L + RE+ R+L + Sbjct: 124 SLLSPYLHFGELSVRKVFHLVRMKQLVWSNEGNHAAEESCTLFLRSVGLREYSRYLCFNH 183 Query: 299 PSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITA 358 P KP + W D + W+QG TG+P++DA MR+L GW+H+R+R++ + Sbjct: 184 P-CSHEKPLLAHLRFFPWVVDESTFKFWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVS 242 Query: 359 SFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRF 418 SF VK L + WR G +YF LLD DL S+ GWQ+ + + DS I NP ++G +F Sbjct: 243 SFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGSLPDSRELDHIDNPQLEGYKF 302 Query: 419 DPQGTFIRHWLPELNNVPTQYIHAPHSWLDK------NDLSLNYPLPIVDHKKAC---HH 469 DP G ++R WLPEL +PT++IH P +L NYPLPIV+ A Sbjct: 303 DPHGEYVRRWLPELARLPTEWIHHPWDAPASVLQAAGVELGSNYPLPIVELDTAQVRLQE 362 Query: 470 TLNQYYAAKKQS 481 L++ + + S Sbjct: 363 ALSEMWQLEAAS 374 >gi|86131286|ref|ZP_01049885.1| cryptochrome, DASH family [Dokdonia donghaensis MED134] gi|85818697|gb|EAQ39857.1| cryptochrome, DASH family [Dokdonia donghaensis MED134] Length = 432 Score = 280 bits (717), Expect = 3e-73, Method: Composition-based stats. Identities = 110/440 (25%), Positives = 194/440 (44%), Gaps = 26/440 (5%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGIS-----ARQSHFI 61 M LVW RN+LR+ DN +L AA +V+ V+ P + + ++ F+ Sbjct: 1 MDTALVWFRNNLRVQDNASLTAAIATGK-RVVGVYYFDPRHYEEGDFGFKKTEKYRAKFL 59 Query: 62 YASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDK 121 ++ ++ +L ++ I + + + SY +VT L +++ EV+ Sbjct: 60 IETIENLKANLDKRNITLLVYNLKPEEHITSVVKSY----KVTSLHSQKEWTAEEVKVTN 115 Query: 122 LLEKRLQHRVICKSFDDSVLLPPGSILNHAL-QMYKVYTPFRKALIQNLVQADLRSLPVP 180 +E+ + V + D L P I + + ++ K++T FRK + + Sbjct: 116 AVERAIPE-VSHELVYDQFLFHPDDIPFNTITEVPKIFTQFRKKCEKESDVRPIFKELTA 174 Query: 181 AIRLTGPVTPSNIPRFFDYPFQAI------DPMFPIGEQNALHILRKFCK--EKVYYYVE 232 + T + I D + GE A L + +K+ YY + Sbjct: 175 LPQENILTTVTPISTLEDLGLDTFVKDHRTAFPWEGGEDAAWARLNDYFWTTQKLAYYKK 234 Query: 233 QRDIPAIQG-TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFY 291 R+ +G +S+LS +L+ G +S RQ + ++K ++ K + + ELIWR+++ Sbjct: 235 TRNGLIGEGYSSKLSAWLANGSISARQIYWKVKRFEKEV--KKNQDTYWLIFELIWRDYF 292 Query: 292 RHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHN 351 +++ + I ++ +W ++ + W G T + ++A M +L GWM N Sbjct: 293 KYVSLKHGDNIFKIGGI-LNKEYDWKHNNKAQREWINGNTKYDFVNANMIELKETGWMSN 351 Query: 352 RLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNP 411 R R ASF K+ DWR+G YF S L+D D+ SN G W + A GND P R FN Sbjct: 352 RGRQNVASFWAKEQEQDWRVGAAYFESILIDYDVHSNWGNWMYNAGVGND--PRDRKFNI 409 Query: 412 TIQGKRFDPQGTFIRHWLPE 431 Q +D G ++R W E Sbjct: 410 KRQQDMYDGSGKYVRLWTQE 429 >gi|126666531|ref|ZP_01737509.1| deoxyribodipyrimidine photolyase, putative [Marinobacter sp. ELB17] gi|126628919|gb|EAZ99538.1| deoxyribodipyrimidine photolyase, putative [Marinobacter sp. ELB17] Length = 500 Score = 280 bits (716), Expect = 4e-73, Method: Composition-based stats. Identities = 111/485 (22%), Positives = 196/485 (40%), Gaps = 33/485 (6%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 ++ VW + DLR+ D+ L AACH + V+ +++ P Q + +S R FI S+ + Sbjct: 8 INAVWFKRDLRLADHAPLQAACH-AGLPVMLLYMVEPSQRQNPHLSLRHWRFIMKSISDM 66 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEV-RRDKLLEKRL 127 L++ G + + IE L + + LF + + RD+ + Sbjct: 67 NLQLNRAGC--EAGVALVHGECIESLTRLQQRYSLHTLFSHEETGDASTFERDQQVAHWC 124 Query: 128 QHR-VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 Q + V + F + +++ +++ + ADLR L V Sbjct: 125 QQQDVNWQEFTTN------AVIRGVFNRDGWDRHWQQVMGAPQQNADLRQLRVIRPTALP 178 Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIP--AIQGTSQ 244 P + + QA GE A + F + +Y P + S+ Sbjct: 179 DWQPPSEWQ------QANSQFQTGGELAANQWMESFFNARGRFYSGSVSSPIASRTFCSR 232 Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304 LSPYL+ G +S RQ + + + ++ + L W + + Sbjct: 233 LSPYLAFGNISLRQAYQQYRANRQKAGWD--RSLRAFASRLHWHCHFIQKFESECA-MEQ 289 Query: 305 KPFIPWTEKIEWNKDS---HLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFL 361 +P + D L AW+ G TG+P++DA MR L G+++ R+R + SFL Sbjct: 290 RPVNRGYLTYPYRTDDGVNADLAAWQDGRTGYPLVDACMRCLQATGYINFRMRAMLVSFL 349 Query: 362 VKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQ 421 L +DW+ G + LD + + +Q G + RI+NP +Q + DPQ Sbjct: 350 CHLLNIDWQRGVHHLARLFLDYEPGIHYSQFQMQ--AGLTGINTIRIYNPVLQSQEQDPQ 407 Query: 422 GTFIRHWLPELNNVPTQYIHAPHSWLDKND------LSLNYPLPIVDHKKACHHTLNQYY 475 GTFIR W+PEL +P +H P + +S +YP P+ + A ++ + Sbjct: 408 GTFIRQWVPELAELPDTLLHQPWLLTPMEEQMFDLQISQHYPAPLFELAPAYAAARDRLW 467 Query: 476 AAKKQ 480 + + Sbjct: 468 DWRSR 472 >gi|71009567|ref|XP_758291.1| hypothetical protein UM02144.1 [Ustilago maydis 521] gi|46098033|gb|EAK83266.1| hypothetical protein UM02144.1 [Ustilago maydis 521] Length = 684 Score = 280 bits (716), Expect = 4e-73, Method: Composition-based stats. Identities = 120/572 (20%), Positives = 204/572 (35%), Gaps = 105/572 (18%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 L W R DLR+ D+ AL AA A + V+ P +H + + F+ S++ + K Sbjct: 8 LYWFRTDLRLHDSPALQAALDLKPAALFPVWCWDPNYVYKHRVGVNRFRFLLESMIALSK 67 Query: 71 SLS--QKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLL-EKRL 127 +++ Q + + E L + +T L + + RRD+L+ E Sbjct: 68 NITSTQSNSQLLVVRG----EPTELLPELWKRWSITHLVFEKDPSAYGRRRDQLILEAAE 123 Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQAD-----LRSLPVPAI 182 + V + L P ++N + + ++ ++ LP+P + Sbjct: 124 KSNVKVVAVQGHHLYDPEQVVNKNKGKPTMSMSTLQKIVADMGDVPKPIDAPEDLPLPTL 183 Query: 183 RLTGPVT-----PSNIPRFFDYPF------------------------------------ 201 + + + P P+ Sbjct: 184 KDSKSKSLQDTLPELARSLEGLPYYTGKGREGPESIDLNSTELGGQRDKKVSCYDTVQGE 243 Query: 202 -----------------QAIDPMFPIGEQNALHILRKFCKEKVY--YYVEQRDIPAI--- 239 + GE AL L CK+ Y + + + P Sbjct: 244 ASELFSAPTLASLGMDASKVKDTIKGGEPIALEKLANICKDAKYVATFAKPKTSPGQSAE 303 Query: 240 -QGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFY 298 T+ LSPYL G LS R+ W +E K+G LN + + Sbjct: 304 DPSTTLLSPYLKFGCLSVRKLWWDAEEAKNRYKGGSKTGPPENLNGQLLFRDMYACAEYA 363 Query: 299 PSVCMGK-------PFIPWTEKIEWNKD--------------SHLLQAWKQGYTGFPIID 337 G+ ++ W ++++ L A+K G TGFP ID Sbjct: 364 IGDAFGRVRGNEVCRYMDWYLPTHYDENGEVVLPRPAGDAVSEARLSAYKLGQTGFPWID 423 Query: 338 AAMRQLNTIGWMHNRLRMITASFLVKD-LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAA 396 A MRQL GWMH+ R A+FL + + W G E F L+D D SN G W W + Sbjct: 424 ALMRQLRLEGWMHHLGRHSVAAFLTRGQCWISWERGAEIFDEYLIDWDPCSNPGNWMWLS 483 Query: 397 STGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDK------N 450 + + YFR++ ++D G +R + PEL P +YI+ P + + Sbjct: 484 CSAFFTQ-YFRLYGLATFPAKYDKTGALVRKYCPELAKFPDKYIYEPFNAPKEVQQKAGC 542 Query: 451 DLSLNYPLPIVDHKKACHHTLNQYYAAKKQSL 482 + +YPLP++D K+A + + + +L Sbjct: 543 IIGKDYPLPMLDEKEAKAENMARMKICYQANL 574 >gi|89890451|ref|ZP_01201961.1| deoxyribodipyrimidine photo-lyase [Flavobacteria bacterium BBFL7] gi|89517366|gb|EAS20023.1| deoxyribodipyrimidine photo-lyase [Flavobacteria bacterium BBFL7] Length = 442 Score = 279 bits (714), Expect = 6e-73, Method: Composition-based stats. Identities = 120/448 (26%), Positives = 198/448 (44%), Gaps = 37/448 (8%) Query: 10 HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGIS-------------AR 56 +LVW RNDLR+TDN +L AC N D KVI ++ P ++ Sbjct: 3 NLVWFRNDLRVTDNHSLKKACDN-DGKVIGIYCFDPIFYQNSNFGLDIDLELPFGKTGKF 61 Query: 57 QSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINE 116 ++ FI ++ ++K L + GI + D + + +T ++ +++ +E Sbjct: 62 RAQFIIEAIEDLRKQLDKHGIPLLVYH----DSPVNVFPDIIKEYDITNIYLQKEWTRDE 117 Query: 117 VRRDKLLE---KRLQHRVICKSFDDSVLLPPGSILNHALQ-MYKVYTPFRKALIQNLVQA 172 V ++ LL K L+ + D L P + Q + V+T FRK + Sbjct: 118 VEQENLLGTALKLLEVKPKGHRTYDQFLYHPHDVPYSNFQEIPTVFTQFRKKCEKESHIR 177 Query: 173 DLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPM------FPIGEQNALHILRKFCKE- 225 L + L V + IP+ D ++ + + G A L + + Sbjct: 178 TLVDIKDYQQELP-SVVSTTIPQLEDLGLESFEKDHRSAFPWKGGAIAAWERLNHYFWDT 236 Query: 226 -KVYYYVEQRD-IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLN 283 K+ YY + R+ + I +S+LS +L+IG +S R+ + ++ ++ K + + Sbjct: 237 GKLQYYKKTRNGLVGIDYSSKLSTWLAIGCISAREIYWEVQRFEKEV--KKNQDTYWLIF 294 Query: 284 ELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQL 343 ELIWR+F++++ + I ++ EW L W G T ++A M++L Sbjct: 295 ELIWRDFFKYVSLKNGNDIFKLGGI-LHKEYEWKSSERELSKWINGETHERFVNANMKEL 353 Query: 344 NTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSV 403 GWM NR R AS+ DWRIG YF L+D D+ SN G W + + GND Sbjct: 354 AATGWMSNRGRQNVASYWSMHKEQDWRIGAAYFEHILIDYDVHSNYGNWMYNSGVGND-- 411 Query: 404 PYFRIFNPTIQGKRFDPQGTFIRHWLPE 431 P R FN +Q R+D GT+ R WL E Sbjct: 412 PRNRTFNIELQASRYDSDGTYQRMWLQE 439 >gi|330825550|ref|YP_004388853.1| DNA photolyase FAD-binding protein [Alicycliphilus denitrificans K601] gi|329310922|gb|AEB85337.1| DNA photolyase FAD-binding protein [Alicycliphilus denitrificans K601] Length = 516 Score = 279 bits (713), Expect = 8e-73, Method: Composition-based stats. Identities = 98/493 (19%), Positives = 174/493 (35%), Gaps = 30/493 (6%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 MS +VW + DLR+ D+ L A + V+ +++ P W Q + + F+ SL Sbjct: 1 MSYTVVWFKRDLRVHDHAPLVHAAAHG--PVLCLYVVEPSLWAQPDSALQHYQFLRESLR 58 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVR-RDKLLEK 125 + + L G Q + E L Q +L + + RD + + Sbjct: 59 DLAQQLRSCGARLQL----ALGEVPEVLARLHALQPFARLVSHEETGNGATYARDLAVAR 114 Query: 126 RLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185 + + + P + L + + +A +Q + +I L Sbjct: 115 WCRRQGVAWQEW------PQHGVVRRLPSRERWHGLWQAHMQAPCLPPPLPASLRSISLP 168 Query: 186 GPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIP--AIQGTS 243 T G +L F + +Y P A S Sbjct: 169 WSDTWPAPETMELADAHDPPQRQRGGRTPGQQVLHDFLHMRGAWYRGGISSPLTAPTACS 228 Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKP-------KSGAFSWLNELIWREFYRHLMA 296 +LSPYL++G L R+ + V L + G ++++ + W + + Sbjct: 229 RLSPYLALGCLGMREVVQATQLRQVQLKSADDPRAARLRQGLAAFMSRMHWHCHFIQKLE 288 Query: 297 FYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMI 356 P + + E+ + A + G TG+PI+DA + L GW++ R+R + Sbjct: 289 SEPELEWRNLHRGYDGLREYAWNPAHFDALQAGQTGWPIVDACVAMLRETGWVNFRMRAM 348 Query: 357 TASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGK 416 S L + WR + Q LD + + Q G + R++NP Q + Sbjct: 349 LVSVAAYPLWLHWRPVGLWLARQFLDYEPGIHWS--QMQMQAGTTGINTTRVYNPIKQAQ 406 Query: 417 RFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND------LSLNYPLPIVDHKKACHHT 470 DP G F+R WLP L VP ++ P + + P+VD A Sbjct: 407 DHDPHGVFVRRWLPALRRVPDAWLFEPWRMAPDVQARCGVRVGQDIAAPLVDLASATKAA 466 Query: 471 LNQYYAAKKQSLL 483 + +A + Q + Sbjct: 467 KARIHALRNQEPI 479 >gi|330915233|ref|XP_003296949.1| hypothetical protein PTT_07199 [Pyrenophora teres f. teres 0-1] gi|311330639|gb|EFQ94953.1| hypothetical protein PTT_07199 [Pyrenophora teres f. teres 0-1] Length = 655 Score = 279 bits (713), Expect = 8e-73, Method: Composition-based stats. Identities = 112/553 (20%), Positives = 186/553 (33%), Gaps = 86/553 (15%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 + W R DLR+ D+ AL AA + + ++ P + + + ++ + K Sbjct: 7 IYWFRTDLRLHDSPALKAALDLNPTCLYPIWTWDPHYVYRARVGPNRWQYLLDCQNDLSK 66 Query: 71 SLSQKG--IVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD-KLLEKRL 127 S+++ + + ++T L + + + RD K+LE Sbjct: 67 SITKLNPKSKLFVIR----EAPQTLFPKLFKAWKITHLVFEKDTDAYARERDDKVLEIAK 122 Query: 128 QHRVICKSFDDSVLLPPGS-ILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIR--- 183 + V L P ++ + + T + A + P Sbjct: 123 KAGVEVVVKTGRTLYDPDELVMQNHGKPTMSITQVQAAGKKIGRIPRPIPAPKSIPNPGD 182 Query: 184 ------------------------------LTGPVTPSNIPRFFDYPFQAIDPMFPIGEQ 213 L GP + +P + + GE Sbjct: 183 TDLKFDQERPESQPDVNAIQRDGHEASYTALAGPNSDFAVPTMEELGLKPATTAHRGGET 242 Query: 214 NALHILRKFC--KEKVYYYVEQRDIPAI---QGTSQLSPYLSIGVLSPRQCWNRLKEEFV 268 AL L + +E + + + P Q T+ LSP++ G LS R + R ++ Sbjct: 243 EALRALDEIIANEEYTATFEKPKTAPTAFEPQSTTLLSPHMHFGSLSCRLFYWRAQDVVD 302 Query: 269 DLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWN----------- 317 K S +L++R+ Y A P I W+ Sbjct: 303 KFKGKASQPPVSLTGQLLFRDMYFGAQAALGYSFGQTYNNPNCRFIPWHLPSKIDTKSGL 362 Query: 318 ----------KDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK-DLL 366 + Q WK G TGFP IDA MRQL GW+H+ R A FL + Sbjct: 363 ITGEYMVDNAEAETHFQRWKHGQTGFPWIDALMRQLAQEGWIHHLGRHAVACFLTRGGCY 422 Query: 367 VDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIR 426 +DW G E F L+D + A N G WQW S ++R ++P +++D +G F+R Sbjct: 423 IDWERGAEVFEEWLIDHEAACNIGNWQW-LSCTAFFAQFYRCYSPIAFPQKWDKEGEFVR 481 Query: 427 HWLPELNNVPTQYIHAPHS-----------------WLDKNDLSLNYPLPIVDHKKACHH 469 ++PEL +YI+ PH YP P+ D + Sbjct: 482 KYVPELARFDKKYIYEPHKAPIVDQKKWGCLIKGDGLAAAEGSMKTYPKPMFDFAQRRDI 541 Query: 470 TLNQYYAAKKQSL 482 L A +L Sbjct: 542 CLAGMKNAYHVNL 554 >gi|329910859|ref|ZP_08275394.1| Deoxyribodipyrimidine photolyase [Oxalobacteraceae bacterium IMCC9480] gi|327546064|gb|EGF31136.1| Deoxyribodipyrimidine photolyase [Oxalobacteraceae bacterium IMCC9480] Length = 498 Score = 279 bits (713), Expect = 9e-73, Method: Composition-based stats. Identities = 106/490 (21%), Positives = 182/490 (37%), Gaps = 33/490 (6%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 + +VW + DLRI D+ L A V+A+F+ PE SA FI L + Sbjct: 1 MEIVWFKRDLRIRDHAPLADAVAAG--PVLALFLHEPEIILAPDFSAAHGAFIRECLDSL 58 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYE-INEVRRDKLLEKRL 127 +L ++G + + L+ QQ L +++ +RD+ + Sbjct: 59 HAALQERGGEL----VEMTGSAPDMLEQIWQQQPFATLRSHQETGNRASYQRDEQVAAWC 114 Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187 + R + P ++ Q + + L ++ P Sbjct: 115 RKRGVTWRQS-----PQNGVIR--GQEARAKRDWIAELDDYSSSEPVKPPRHIVPSKLPP 167 Query: 188 VTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIP--AIQGTSQL 245 + + M G A+ +L F + ++ Y P A G S+L Sbjct: 168 MLTGPVAPLQAAGHDKPGRM-KGGRAEAIGLLTAFIRTRILRYPYAISSPITAEHGCSRL 226 Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFS--------WLNELIWREFYRHLMAF 297 SP+L+ GV++ R+ + + + + L WR Y M Sbjct: 227 SPFLAYGVITMREIVLAMNRRVDSAELAVNEAERERLISALRFFADRLRWRAGYFQNMES 286 Query: 298 YPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMIT 357 P + E D W++G TG+P++DAAM+ L+ GW++ R+R + Sbjct: 287 MPRLEFDNIHSGMNGLREGEFDPVFFARWREGETGYPMVDAAMKMLHHTGWLNMRMRGML 346 Query: 358 ASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKR 417 SF V +L + WR + + +D + A + Q G +NP Q + Sbjct: 347 LSFAVNELWLHWREPALFLAREFVDYEPAIHYN--QMQIHAGTAGAGSMLAYNPVKQAQE 404 Query: 418 FDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND------LSLNYPLPIVDHKKACHHTL 471 DP+G F+R WLP L VP YI P + + +YP P+VDH A Sbjct: 405 LDPKGIFVRRWLPALRAVPDAYIFTPWTMPPAVQTACGVAIGSDYPAPLVDHLDAARQAR 464 Query: 472 NQYYAAKKQS 481 ++ A+ + Sbjct: 465 SRVADAQIAA 474 >gi|88802284|ref|ZP_01117811.1| probable bacterial cryptochrome [Polaribacter irgensii 23-P] gi|88781142|gb|EAR12320.1| probable bacterial cryptochrome [Polaribacter irgensii 23-P] Length = 436 Score = 278 bits (712), Expect = 1e-72, Method: Composition-based stats. Identities = 117/435 (26%), Positives = 202/435 (46%), Gaps = 23/435 (5%) Query: 8 SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGIS-----ARQSHFIY 62 + ++W RN+LR+ DN++L A N +KVIAV+ P+ ++ + ++ F+ Sbjct: 7 NTGVIWFRNNLRVQDNQSLTKAIENH-SKVIAVYFFDPKLFKIDSFGFQKTASFRTKFLI 65 Query: 63 ASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKL 122 ++ ++K+L+ I + S + + C + V ++ +++ E+ D Sbjct: 66 ETITDLKKNLAALNITLLTYMESPENKM----HTLCDEFSVGTIYTQKEWTREEIATDNF 121 Query: 123 LEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLV---QADLRSLPV 179 ++ L V + D L P ++ ++ V+T FRK + + + + + L Sbjct: 122 IKSTLPETVRFVADYDQFLYHPDAVSRDFSKIPDVFTIFRKKVEKTVAVEKECTVTKLSE 181 Query: 180 PAIRLTGPVTPSNIPRFFDYPFQAIDPMFP--IGEQNALHILRKFC--KEKVYYYVEQRD 235 + T PS F FP GE AL L+ + +KV +Y R+ Sbjct: 182 RNLIETETAIPSMESLGFSDTKTHAKTAFPFKGGETAALERLQYYFFESKKVSFYKNTRN 241 Query: 236 -IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHL 294 + +++ SP+L+ G LS + + ++KE + + + ELIWR++++++ Sbjct: 242 GLVGTDYSTKFSPWLANGSLSAKTIYWKIKEY--EAEFGSNQSTYWVIFELIWRDYFKYI 299 Query: 295 MAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLR 354 Y + I + EWN D +Q W G T ++A M +L G+M NR R Sbjct: 300 SLKYNAKVFRIGGILE-KTYEWNTDQKTVQQWINGETKDAFVNANMIELKETGFMSNRGR 358 Query: 355 MITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQ 414 AS+ KDLL+DWRIG YF S LLD D+ SN G W + A GND P R FN +Q Sbjct: 359 QNVASYFAKDLLLDWRIGAAYFESVLLDYDVHSNYGNWMYVAGVGND--PRDRKFNTKMQ 416 Query: 415 GKRFDPQGTFIRHWL 429 R+D + + WL Sbjct: 417 ADRYDQNHKYRKLWL 431 >gi|325180459|emb|CCA14865.1| cryptochrome putative [Albugo laibachii Nc14] Length = 616 Score = 278 bits (712), Expect = 1e-72, Method: Composition-based stats. Identities = 124/549 (22%), Positives = 204/549 (37%), Gaps = 86/549 (15%) Query: 11 LVWLRNDLRITDNKALYAACH--NSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 L+W R DLR+ DN AL+AA +SD + V+I + A + F+ L + Sbjct: 75 LLWFRRDLRLHDNGALHAAIQATDSDTVLFPVYIL--HRPENKKCGAVRFQFLLECLEDI 132 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128 SL QK ++I +L ++T L + + ++RD+ + Q Sbjct: 133 DTSLRQKQSRLLV----FCGEAISFLTVLMQAWKITDLIFEKFQLPYAIKRDEKIMSMAQ 188 Query: 129 H-RVICKSFDDSVLLPPGSILN-HALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 + + + L P I+ + Q+ + F + P Sbjct: 189 TLHINVTTVSGATLHDPKEIVTLNHNQVPLDFQNFLDIVSDMPQPRLPLLTPSQLPSFES 248 Query: 187 PVTPSNIPRFFD--------------------------------------YPFQAIDPMF 208 ++ + F Y + Sbjct: 249 VISVETLCECFQAEYLSQSLLNITEAQLLIDTIIGKAYGLLTIPALDVFGYLTPSQHSFL 308 Query: 209 PIGEQNALHILRKFC--KEKVYYYVEQRDIP---AIQGTSQLSPYLSIGVLSPRQCWNRL 263 GE AL L FC +E+V + + + P T+ LSPYL+ G LS R + R+ Sbjct: 309 YGGESVALERLEVFCSIEERVGCFEKPKTSPVQMNPPSTTALSPYLAFGCLSVRALFYRI 368 Query: 264 KEEFVD-LLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWN----- 317 ++ + S A S +L+WREF+ P + P KI W Sbjct: 369 MFIQLNFSSVSKGSPATSLDGQLMWREFFYCYAHNVPEFASPEQ-NPLCRKIGWRLQNED 427 Query: 318 ---------------KDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLV 362 S W +G TGFP IDA MRQ+ T GW H+ R A FL Sbjct: 428 SDPLTTHSSSKEEDLVASEQFTCWARGKTGFPWIDAIMRQILTEGWAHHLARHAVACFLT 487 Query: 363 K-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQ 421 + DL + W G + F L+D D A N G W W +++ + +F+P+ +++ + Sbjct: 488 RGDLYISWIHGAKLFQELLIDMDWAINVGNWLWVSASCFF-HDFQNVFSPSTFPQQYYNE 546 Query: 422 ---GTFIRHWLPELNNVPTQYIHAPHSWLDKND------LSLNYPLPIVDHKKACHHTLN 472 +I+H++PEL N+P +Y+ P + +YP PI+DH A + Sbjct: 547 QEAAIYIKHYIPELQNMPDRYVFEPWRAPLNIQKSVNCLIGKDYPFPILDHHVASKKCIL 606 Query: 473 QYYAAKKQS 481 + + Sbjct: 607 ALKRCSEAA 615 >gi|149375532|ref|ZP_01893302.1| Deoxyribodipyrimidine photolyase [Marinobacter algicola DG893] gi|149360237|gb|EDM48691.1| Deoxyribodipyrimidine photolyase [Marinobacter algicola DG893] Length = 440 Score = 277 bits (709), Expect = 2e-72, Method: Composition-based stats. Identities = 112/430 (26%), Positives = 186/430 (43%), Gaps = 21/430 (4%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQW-----RQHGISARQSHFIYA 63 V L W DLR+ DN AL AA + ++ V++ P + + + A + F++ Sbjct: 2 VSLYWFTRDLRLHDNAALLAASKSD--MLLCVYVVDPRWFVPGPFQCRALGAHRWRFLWQ 59 Query: 64 SLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLL 123 SL+ +++ L G F + + + ++ +R E + K L Sbjct: 60 SLISLERDLRPLGQRLHI----AFGKPEQVIPDLVHDHNINRVIRSRLPGTREAVQWKSL 115 Query: 124 EKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQ--NLVQADLRSLPVPA 181 +L V + F+ L GS+ + ++ FRK + + N LR + A Sbjct: 116 RDKLPQTV-FQQFETLSLFTEGSLPMDLSHLPDTFSQFRKQVEKTGNRNSERLRIRTLTA 174 Query: 182 IRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRK--FCKEKVYYYVEQRD-IPA 238 + N F GE L L F ++ +Y E R+ + Sbjct: 175 LPPAPGYPQDNRGECPAIAEPRHPIGFRGGESAGLERLNDYLFVNHRIAHYKETRNALDE 234 Query: 239 IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFY 298 +S+LSP+L+ G LS R+ + + + + + EL+WRE++ + Sbjct: 235 ADASSRLSPWLANGALSAREVADTISDYENQHV--KNESTYWLWFELLWREYFYWYALKH 292 Query: 299 PSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITA 358 + + +K + H +AW G T +P+++AAM QL G++ NR R I A Sbjct: 293 GASLFHRDG-VQQKKRSTSFYPHRFKAWCAGSTEYPLVNAAMNQLRETGYISNRSRQIVA 351 Query: 359 SFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRF 418 S LV +L +DWR G +F QL+D D+ASN G WQ+ A G D R FN Q ++F Sbjct: 352 SCLVNELELDWRYGAAWFEEQLVDYDVASNYGNWQYQAGVGADPKG-PRHFNLEKQARQF 410 Query: 419 DPQGTFIRHW 428 DP G F++ W Sbjct: 411 DPDGDFVKRW 420 >gi|312211632|emb|CBX91717.1| hypothetical protein [Leptosphaeria maculans] Length = 709 Score = 277 bits (709), Expect = 3e-72, Method: Composition-based stats. Identities = 113/558 (20%), Positives = 191/558 (34%), Gaps = 86/558 (15%) Query: 6 AMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASL 65 + + W R DLR+ D+ AL AA + ++ P + + + ++ Sbjct: 48 SKPRVIYWFRTDLRLHDSPALKAALDLKPDCLYPIWTWDPHYVYRARVGPNRWQYLLDCQ 107 Query: 66 LQVQKSLSQKG--IVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLL 123 + KS+++ + + ++T L + + + RD+ + Sbjct: 108 KDLSKSITKVNPQSKLFVIR----EAPQTLFPKLFKAWQITHLVFEKDTDAYGRERDEQV 163 Query: 124 EKRLQ-HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQAD-----LRSL 177 + + V L P ++ + +A + + Q +SL Sbjct: 164 MELAKTAGVEVVVKTGRTLYDPDELVRQNHGKPTMSINQVQAAGKKIGQIPRPIPAPKSL 223 Query: 178 PVPAI-----------------------------RLTGPVTPSNIPRFFDYPFQAIDPMF 208 P P L GP +P + + Sbjct: 224 PGPGKVDFDFHQEKPSNSPDINDAQRNTDEASYSSLAGPNGDFAVPTMKELGLKLATSTH 283 Query: 209 PIGEQNALHILRKFC--KEKVYYYVEQRDIPAI---QGTSQLSPYLSIGVLSPRQCWNRL 263 GE AL L K +E + + + P Q T+ LSP+L G LS R+ + R+ Sbjct: 284 RGGETLALEALEKIIANEEYTATFEKPKTAPTAFEPQATTLLSPHLHFGSLSCREFYWRV 343 Query: 264 KEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWN------ 317 ++ K S +L++R+ Y A P I W+ Sbjct: 344 QDVVDRFKGKASQPPTSLTGQLLFRDMYFGAQAALGYSFSQTYNNPQCRFIPWHLPSKID 403 Query: 318 ------------KDSH---LLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLV 362 D+ + WK+G TGFP IDA MRQL GW+H+ R A FL Sbjct: 404 IKSSMTTGEYLVDDAEAEIHFKRWKEGCTGFPWIDALMRQLKREGWIHHLGRHAVACFLT 463 Query: 363 K-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQ 421 + +DW G E F L+D + A N G WQW S +FR ++P +++D + Sbjct: 464 RGGCYIDWERGAEVFEEWLIDHEAACNIGNWQW-LSCTAFFAQFFRCYSPIAFPQKWDKE 522 Query: 422 GTFIRHWLPELNNVPTQYIHAPHSWLDKN-----------------DLSLNYPLPIVDHK 464 G F++ ++PEL +YI+ P + YP P+ D Sbjct: 523 GEFVKRYVPELAKFDKKYIYEPWKAPIADQKKWGCRIEGDGLSVAKGEGETYPKPMFDFP 582 Query: 465 KACHHTLNQYYAAKKQSL 482 L+ A L Sbjct: 583 TRRDICLDGMKNAYHVGL 600 >gi|295135590|ref|YP_003586266.1| cryptochrome-like DNA photolyase family protein [Zunongwangia profunda SM-A87] gi|294983605|gb|ADF54070.1| cryptochrome-like DNA photolyase family protein [Zunongwangia profunda SM-A87] Length = 429 Score = 277 bits (709), Expect = 3e-72, Method: Composition-based stats. Identities = 111/438 (25%), Positives = 192/438 (43%), Gaps = 26/438 (5%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQ-----HGISARQSHFI 61 MS L+W N+LR+ DNKAL+ AC + +VIAV+ P ++++ ++ F+ Sbjct: 1 MSTGLIWFENNLRVKDNKALFEACEKHE-QVIAVYCFDPRKFKKTKYGFPKTGKFRAKFL 59 Query: 62 YASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDK 121 S+ +Q++L+Q I E + ++ +++ ++ E + Sbjct: 60 IESIKNLQENLNQLNISLLI----FLQKPEEIIPEIARNHKIEAIYFQEEWTTEEKQIIA 115 Query: 122 LLEKRLQHRVICKSFDDSVLLPPGSILNHA-LQMYKVYTPFRKALIQNLVQADLRSLPVP 180 L+K+L + +SF L P I ++ KVYT FRK Q + +P Sbjct: 116 ALKKKLP-TIDFQSFYTQFLFHPEDIAYGDFNEIPKVYTEFRKKCEQYVDVRKEIEIPKQ 174 Query: 181 AIRLTGPVTPSNIPRFFDYPFQA------IDPMFPIGEQNALHILRKFCKE--KVYYYVE 232 S P + + F GE A + + + K+ Y + Sbjct: 175 KPESNRIKNTSKTPNLKELGLEDYQQDSRTAFSFKGGEDEAWKRIDYYFWKTTKLSEYKQ 234 Query: 233 QRD-IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFY 291 R+ + +S+LS +L+ G +S ++++K+ + I + + ELIWR+F+ Sbjct: 235 TRNGLLGKDYSSKLSAWLANGSISAVSIFHQVKKFEHE--ITKNQDTYWLIFELIWRDFF 292 Query: 292 RHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHN 351 ++ + + I +K++W LQ W G T ++A + ++ G+M N Sbjct: 293 KYTSLKHGNSIFKLSGI-LDKKLDWKFSIESLQQWINGETKEDFVNANINEIAATGFMSN 351 Query: 352 RLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNP 411 R R SF K+L DWR G YF S L+D D+ SN G W + + GND P R FN Sbjct: 352 RGRQNVNSFWAKELKQDWRAGAAYFESVLVDYDVHSNWGNWMYNSGVGND--PRDRKFNI 409 Query: 412 TIQGKRFDPQGTFIRHWL 429 Q +DP ++ WL Sbjct: 410 KKQADLYDPDNQYVDTWL 427 >gi|55978285|ref|YP_145341.1| DNA photolyase [Thermus thermophilus HB8] gi|47606704|sp|P61497|PHR_THET8 RecName: Full=Deoxyribodipyrimidine photo-lyase; AltName: Full=DNA photolyase; AltName: Full=Photoreactivating enzyme gi|17942830|pdb|1IQR|A Chain A, Crystal Structure Of Dna Photolyase From Thermus Thermophilus gi|21465636|pdb|1IQU|A Chain A, Crystal Structure Of Photolyase-Thymine Complex gi|146386554|pdb|2J07|A Chain A, Thermus Dna Photolyase With 8-Hdf Antenna Chromophore gi|146386555|pdb|2J08|A Chain A, Thermus Dna Photolyase With 8-Iod-Riboflavin Antenna Chromophore gi|146386556|pdb|2J09|A Chain A, Thermus Dna Photolyase With Fmn Antenna Chromophore gi|15080709|dbj|BAB61864.2| DNA photolyase [Thermus thermophilus] gi|55773458|dbj|BAD71898.1| DNA photolyase [Thermus thermophilus HB8] Length = 420 Score = 277 bits (709), Expect = 3e-72, Method: Composition-based stats. Identities = 133/425 (31%), Positives = 198/425 (46%), Gaps = 35/425 (8%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M LVW R DLR+ D+ AL A V+ + + P + R+ + ++ Sbjct: 1 MGPLLVWHRGDLRLHDHPALLEALARG--PVVGLVVLDPNNLKTT---PRRRAWFLENVR 55 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 ++++ +G + ++ E + ++ + RD + + Sbjct: 56 ALREAYRARGGALWVLEGLPWEKVPEAARRL----KAKAVYALTSHTPYGRYRDGRVREA 111 Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 L +L P + + Y+VYTPF L + LP P G Sbjct: 112 LP-------VPLHLLPAPHLLPPDLPRAYRVYTPF-----SRLYRGAAPPLPPPEALPKG 159 Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246 P P GE+ AL LR F + K+ Y E+RD +G S+LS Sbjct: 160 PEEGEIPREDPGLPLPE------PGEEAALAGLRAFLEAKLPRYAEERDRLDGEGGSRLS 213 Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP 306 PY ++GVLSPR + + GA W+ EL+WR+F HL+ +P + +P Sbjct: 214 PYFALGVLSPRLAAWEAER-------RGGEGARKWVAELLWRDFSYHLLYHFPWMAE-RP 265 Query: 307 FIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLL 366 P + W +D L QAW +G TG P++DAAMR+L+ G++ NR RM A F VK LL Sbjct: 266 LDPRFQAFPWQEDEALFQAWYEGKTGVPLVDAAMRELHATGFLSNRARMNAAQFAVKHLL 325 Query: 367 VDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIR 426 + W+ EE F LLDGD A N GWQWA G D+ PYFR+FNP +QG+R DP+G +++ Sbjct: 326 LPWKRCEEAFRHLLLDGDRAVNLQGWQWAGGLGVDAAPYFRVFNPVLQGERHDPEGRWLK 385 Query: 427 HWLPE 431 W PE Sbjct: 386 RWAPE 390 >gi|227548195|ref|ZP_03978244.1| possible deoxyribodipyrimidine photo-lyase [Corynebacterium lipophiloflavum DSM 44291] gi|227079756|gb|EEI17719.1| possible deoxyribodipyrimidine photo-lyase [Corynebacterium lipophiloflavum DSM 44291] Length = 440 Score = 276 bits (707), Expect = 4e-72, Method: Composition-based stats. Identities = 133/495 (26%), Positives = 208/495 (42%), Gaps = 83/495 (16%) Query: 8 SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67 + +VW R+DLR+ DN AL A V+ +++ + GI + ++ SL Sbjct: 3 TPTIVWFRDDLRLADNAALTWATERG--PVVGLYV---HETVGRGIGRAAAWWLRHSLDA 57 Query: 68 VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127 +++SL I D E + + + +NR+Y + D +++ Sbjct: 58 LRESLPAPLIEL-------AGDPREIVPRLARELGA-AVTWNRRY--HLTDIDAEVKEAT 107 Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187 S +L P + Y+V+TPF A L+ A LPVP I Sbjct: 108 G----AVSHPGYLLTEPWDVR---ATPYRVFTPFFNAARSVLLDAPPTPLPVPHITPADI 160 Query: 188 VTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQG-TSQLS 246 + ++ GE A L++F Y A+ G TS LS Sbjct: 161 GPATVYAPAEPAWAASLAQHNTPGEGAAREQLKRFIA-ASADYDNN----ALDGVTSGLS 215 Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP 306 P+L G +SP + W + GA+++ +L+WR+F H P + K Sbjct: 216 PHLRFGEISPAEVWLAAVDA----------GAWAFARQLLWRDFAWHRYYHVPDMAT-KN 264 Query: 307 FIPWTEKIEWNKDS-----------------------HLLQAWKQGYTGFPIIDAAMRQL 343 ++ +W L AW+ G TG P++DA MR+L Sbjct: 265 VRRKFDRFDWEWTPNAVPGSTDAAFAHAEMDPGAQHMKELAAWQSGRTGIPLVDAGMREL 324 Query: 344 NTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSV 403 G MHNR+RM++ S+L K+L + WR GEE+F L+D D ASN WQW A +G+D+ Sbjct: 325 WATGRMHNRVRMVSGSWLTKNLGIHWRHGEEWFWDTLVDADAASNAFNWQWVAGSGDDAA 384 Query: 404 PYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDH 463 PYFRIFNP Q ++FDP G+++ WLP+ + +Y P+ D Sbjct: 385 PYFRIFNPLTQAEKFDPHGSYVARWLPD---------------------TADYSEPMADV 423 Query: 464 KKACHHTLNQYYAAK 478 K++ L Y K Sbjct: 424 KQSRLRALVAYDDIK 438 >gi|309779655|ref|ZP_07674414.1| deoxyribodipyrimidine photolyase family protein [Ralstonia sp. 5_7_47FAA] gi|308921596|gb|EFP67234.1| deoxyribodipyrimidine photolyase family protein [Ralstonia sp. 5_7_47FAA] Length = 516 Score = 276 bits (707), Expect = 5e-72, Method: Composition-based stats. Identities = 98/491 (19%), Positives = 178/491 (36%), Gaps = 32/491 (6%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 MS +VW + DLR+ D+ L A KV+ +++ P W Q +++ FI L Sbjct: 1 MSYTIVWFKRDLRVHDHAPLVHAARRG--KVLCLYVIEPSLWAQPDAASQHYLFIQECLH 58 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYE-INEVRRDKLLEK 125 + + L G Q + E + L + + + RDK + + Sbjct: 59 DLAEQLRACGARLQV----AVGEVTEVFGRLHAAAAFSHLVSHEETGNGHTFARDKAVAR 114 Query: 126 R-LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL 184 L H V + + ++ + + + + L + +P + Sbjct: 115 WCLDHDVTWREWPQHGVVR--RLPTRDVWHDRWAEHMYAPCMPAPGVGALSDVMLPWPAM 172 Query: 185 TGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIP--AIQGT 242 P + P + E +LR F E+ Y P A Sbjct: 173 DWPGCEALGLDTHAPPRRQRGGRARGSE-----VLRDFLFERSRNYRGGISSPLTAPSAC 227 Query: 243 SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFS-------WLNELIWREFYRHLM 295 S+LSPYL+ G L R+ ++ + L A +++ L W + + Sbjct: 228 SRLSPYLAYGCLGMREVVQATEQRVLQLRASTDEDAVWQRKGLAAFVSRLHWHCHFIQKL 287 Query: 296 AFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRM 355 P++ + E ++ A G TG+P++DA + L GW++ R+R Sbjct: 288 ESEPAIEFRNLHRGYDGLRESAWNADHFAALVAGRTGWPMVDACVAMLRETGWINFRMRA 347 Query: 356 ITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQG 415 + S L + WR + Q +D + + Q G + R++NP Q Sbjct: 348 MLVSVASYPLWLHWRPVGVWLARQFVDYEPGIHWS--QMQMQAGTTGINTTRVYNPIKQA 405 Query: 416 KRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND------LSLNYPLPIVDHKKACHH 469 + DP G F+R WLP L VP ++ P + + P+P+VD + A Sbjct: 406 QDQDPHGRFVRRWLPALRRVPDAWLLQPWRMPPDVQARCGVRVGEDIPVPLVDLEAATRQ 465 Query: 470 TLNQYYAAKKQ 480 + +A + + Sbjct: 466 AKMRVHALRAR 476 >gi|313212920|emb|CBY36823.1| unnamed protein product [Oikopleura dioica] Length = 476 Score = 276 bits (706), Expect = 5e-72, Method: Composition-based stats. Identities = 112/451 (24%), Positives = 189/451 (41%), Gaps = 26/451 (5%) Query: 10 HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIAT-PEQWRQHGISARQSHFIYASLLQV 68 + W R LR+ DN+ALY A S V ++I Q + SA ++ F+ L + Sbjct: 7 TVHWFRKGLRLHDNEALYHAVTTSQV-VFPIYILDVDWQTEKEKFSALKTRFLIECLRDL 65 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128 + L + G D+ + +C + +T++ + + EI RD+ + K + Sbjct: 66 DEGLKKYGTRLYVLTG----DATTVIKKFCKENEITQMTWMKDAEIFYRERDEEITKVVH 121 Query: 129 H-RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187 + KSF L ++ + A I ++ Q V A Sbjct: 122 RMEIKTKSFLGHTLYDQDEVIAKNGGKIPMDLSEFYAAIADMEQPGAPCPTVTAKHFKLG 181 Query: 188 VTPSNIPRFFDYPFQAID-------PMFPIGEQNALHILRKFCKEKVYYYVEQRD---IP 237 I + F P++ GE+ AL +L+ + + + + Sbjct: 182 SKKIIIFKKSILAFGVWGHQAPRSLPIYRGGERQALKVLQAKINDPTLFTLNGFNQGVKT 241 Query: 238 AIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAF 297 + T+ LS Y + G +S R W ++ P+S ++++REF+ + A Sbjct: 242 KLPHTTYLSAYQNYGCISTRHFWKAAEKL-------PESKTIMLRGQIMYREFFY-VAAS 293 Query: 298 YPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMIT 357 + +IEW K+ L AW++G TG+P IDA MRQL T G++H+ R Sbjct: 294 QVNNFTKMAGNRICRQIEWYKNEEHLSAWQEGRTGYPYIDAVMRQLVTEGFIHHLNRWAV 353 Query: 358 ASFLVKD-LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGK 416 ASFL L ++W G+E F +DGD A N G W W + + +P + Sbjct: 354 ASFLTNGQLWLNWEHGQEMFEEHQIDGDYAMNAGCWMWCTGSAFMDSISEKTLDPVKFAR 413 Query: 417 RFDPQGTFIRHWLPELNNVPTQYIHAPHSWL 447 R+DP+G F R + PEL N+P +Y+ +P Sbjct: 414 RWDPEGHFTRKYCPELKNMPLKYLFSPWEAP 444 >gi|298708262|emb|CBJ48325.1| cryptochrome 2 [Ectocarpus siliculosus] Length = 571 Score = 276 bits (706), Expect = 6e-72, Method: Composition-based stats. Identities = 125/494 (25%), Positives = 206/494 (41%), Gaps = 48/494 (9%) Query: 11 LVWLR-NDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQH-----GISARQSHFIYAS 64 +VW + +DLR+ D++ L A S A+V VF + Q +SA + F+ S Sbjct: 26 IVWFKYSDLRLEDHEPLALAHRES-AQVAHVFCIDDRWFGQTRRGTSKMSAARCRFLLES 84 Query: 65 LLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVT-KLFYNRQYEINEVRRDKLL 123 + ++ L ++G + D LF + E + Sbjct: 85 VADLRARLRERGSDLLVRRGHPEDVIPALAARLGGGSVAGVTLFAHTDVCSEEADVHAAV 144 Query: 124 EKRLQHRVIC----------KSFDDSVLLPPGSILNH-ALQMYKVYTPFRKALIQNLVQA 172 + L K + L + + +++T FRK++ Sbjct: 145 KSALAAASSAGRGGGAAVAVKEAWGNTLHDVADLPFDFPSGVPEIFTQFRKSVESKYSCK 204 Query: 173 DLRSLPVPAI---------------RLTGPVTPSNIPRFFDYPFQAIDPMFP--IGEQNA 215 +P+P+ G + + P + +FP GE Sbjct: 205 MRPPVPLPSPFRPVPTGTTQDDGEASAPGAIPTTEELGLGTAPERDARSVFPFNGGETAG 264 Query: 216 LHILRKFC--KEKVYYYVEQRDIPAIQG-TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLI 272 L ++ + ++++ Y R+ G +S+ SP+L++G LSPR +++ D + Sbjct: 265 LRRVQSYIWDEDRLREYKVTRNGLLGSGFSSKFSPWLALGCLSPRTIVKEIRKYETDRI- 323 Query: 273 KPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPF-IPWTEKIEWNKDSHLLQAWKQGYT 331 + + EL+WR+F+R+ + T + W D+ L+AWK+G T Sbjct: 324 -ANDSTYWLIFELLWRDFFRYSAVKNGNSIFHLGGPRRDTGRQRWLDDAGSLEAWKEGET 382 Query: 332 GFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGG 391 G+P+IDA MR+L G+M NR R + ASF +DL +DWR+G E+F LLD D ASN G Sbjct: 383 GYPLIDANMRELKASGFMSNRGRQVVASFFTRDLQMDWRLGAEHFEEYLLDHDPASNWGN 442 Query: 392 WQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWL---- 447 W + A G+D R FN Q K +D +G ++RHWLPEL +PT + P Sbjct: 443 WNYVAGVGSDPRE-GRYFNIEKQAKTYDAEGAYMRHWLPELAALPTTALQTPGGITTMLR 501 Query: 448 -DKNDLSLNYPLPI 460 + YP PI Sbjct: 502 HMHAIPTSVYPDPI 515 >gi|298694022|gb|ADI97244.1| deoxyribodipyrimidine photolyase, putative [Staphylococcus aureus subsp. aureus ED133] Length = 457 Score = 276 bits (706), Expect = 6e-72, Method: Composition-based stats. Identities = 137/481 (28%), Positives = 217/481 (45%), Gaps = 35/481 (7%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M++ ++ L R N D FI E S ++ F +L Sbjct: 1 MAIAVL-LNRMFRTEHNPLFEYIYQQKDDIDACYFIIAEEDMST--ASDLKAQFYRGTLQ 57 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQ---YEINEVRRDKLL 123 + +SL + + + S + + S+C + ++++ Y + E Sbjct: 58 RFYQSL-------HAEKLTPYVMSYDDIISFCKENNISEVVVAGDIMSYHLEEYDILHQR 110 Query: 124 EKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIR 183 + Q + + +N + YKV+T F K L D+ + + Sbjct: 111 SQFDQAEITVTLVRGNHYFKASKTMNKQGEPYKVFTSFYKKWRPYLRIRDVYHYDLNELI 170 Query: 184 LTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHI--LRKFCKEKVYYYVEQRDIPAIQG 241 P+N+ D G A ++F + + Y R+ Sbjct: 171 DIVIAAPNNLK----------DVQIDAGSSQAHEQEKWQQFLEHDIQNYENGREYLPEIL 220 Query: 242 TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSV 301 TSQLS L+ G+L + +N L + + +S +++ ELI+REFY LM YP Sbjct: 221 TSQLSIALAYGLLDIIEIFNDLLSRYEE----DESNYEAFIRELIFREFYYVLMTQYPES 276 Query: 302 CMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFL 361 + F P I W+++ +AW G TGFPIIDAAM +L G+MHNR+RM+ + FL Sbjct: 277 A-HQSFKPKYRHINWSENEADFKAWCDGQTGFPIIDAAMMELRQTGFMHNRMRMVVSQFL 335 Query: 362 VKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQ 421 KDL ++W GE++F L+D D ASN GWQW+ASTG D+VPYFR+FNP Q +RFDP+ Sbjct: 336 TKDLFINWTWGEDFFRKYLIDYDAASNVHGWQWSASTGTDAVPYFRMFNPIRQSERFDPK 395 Query: 422 GTFIRHWLPELNNVPTQYIHAPHSWLDK-----NDLSLNYPLPIVDHKKACHHTLNQYYA 476 +I+ +LP LN + +Y+H H + +L +YP IVDH++ L + A Sbjct: 396 ALYIKTYLPVLNQIDAKYLHDTHRNESELFKQGIELGRHYPKQIVDHQEKRSQVLATFKA 455 Query: 477 A 477 Sbjct: 456 L 456 >gi|254369039|ref|ZP_04985052.1| hypothetical protein FTAG_00881 [Francisella tularensis subsp. holarctica FSC022] gi|157121960|gb|EDO66130.1| hypothetical protein FTAG_00881 [Francisella tularensis subsp. holarctica FSC022] Length = 457 Score = 276 bits (705), Expect = 7e-72, Method: Composition-based stats. Identities = 108/439 (24%), Positives = 186/439 (42%), Gaps = 29/439 (6%) Query: 53 ISARQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQY 112 +S RQ F+ L ++ L++ G D++E + + + ++ +++ Sbjct: 1 MSHRQYLFLSECLEELNTELTKLGQSLAIM----LGDAVEIFEQLIQKYNIKNVWSHQET 56 Query: 113 EINEV-RRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQ 171 + +RD LEK + I ++ + + + + +++ Sbjct: 57 WNDWTYQRDIKLEKFFKQNNIVWHQPYQ-----NGVVRCLADRDNWALLWHQRMSEKIIR 111 Query: 172 ADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYV 231 A + + ++ P S D + G AL IL F ++ Y Sbjct: 112 APTKLKFICENQIKIPTAES-----LDLEYDDCYKRQKGGRIRALRILDSFLYQRGCGYT 166 Query: 232 EQRDIP--AIQGTSQLSPYLSIGVLSPRQCWNR-------LKEEFVDLLIKPKSGAFSWL 282 ++ P A + S+LSPY++ GV+S ++ + + +KE V K S S+L Sbjct: 167 KEMSSPVTAFKSCSRLSPYIAFGVISLKEIYQKANQRKNEIKESSVKNKTKWLSAMRSFL 226 Query: 283 NELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQ 342 + L W + + PS+ + + + +AWK G TG+P+IDA MR Sbjct: 227 SRLRWHCHFMQKLEDQPSIEYENLHSAYDQLRTEPLNQQCFEAWKTGNTGYPMIDACMRA 286 Query: 343 LNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDS 402 L GW++ R+R + SF L +DWR+ Y D + + Q +G Sbjct: 287 LIATGWLNFRMRAMLMSFASYHLWLDWRVTSLYLAVLFTDYEPGIHYSQVQMQ--SGTTG 344 Query: 403 VPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVD 462 + RI+NP Q P G FIR WLPEL NV + IH P WL+K++ SL+YP P +D Sbjct: 345 INSIRIYNPIKQSIDQYPNGEFIRRWLPELENVSNENIHTP--WLEKHN-SLDYPDPTID 401 Query: 463 HKKACHHTLNQYYAAKKQS 481 K+A + Y +K S Sbjct: 402 EKQARKFAADNIYKIRKSS 420 >gi|189188250|ref|XP_001930464.1| cryptochrome-2 [Pyrenophora tritici-repentis Pt-1C-BFP] gi|187972070|gb|EDU39569.1| cryptochrome-2 [Pyrenophora tritici-repentis Pt-1C-BFP] Length = 655 Score = 276 bits (705), Expect = 7e-72, Method: Composition-based stats. Identities = 112/558 (20%), Positives = 188/558 (33%), Gaps = 86/558 (15%) Query: 6 AMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASL 65 + + W R DLR+ D+ AL AA + A + ++ P + + + ++ Sbjct: 2 SKPRVIYWFRTDLRLHDSPALKAALDLNPACLYPIWTWDPHYVYRARVGPNRWQYLLDCQ 61 Query: 66 LQVQKSLSQKG--IVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD-KL 122 + KS+++ + + ++T + + + + RD K+ Sbjct: 62 DDLSKSITKLNPKSKLFVIR----EAPQTLFPKLFKAWKITHMVFEKDTDAYARERDDKV 117 Query: 123 LEKRLQHRVICKSFDDSVLLPPGSILNHALQ------------------------MYKVY 158 LE + V L P ++ K + Sbjct: 118 LEIARKSGVEVVVKTGRTLYDPDELVKQNHGKPTMSITQVQAAGKKIGRIPRPIPAPKSF 177 Query: 159 TPFRKALIQNLVQADLRSLPVPAIR----------LTGPVTPSNIPRFFDYPFQAIDPMF 208 ++ + V AI+ L GP +P + + Sbjct: 178 PNPGDTDLKFDQERPESQPDVNAIQRDGDEASYTALAGPNGDFAVPTMEELGLKPATTAH 237 Query: 209 PIGEQNALHILRKFC--KEKVYYYVEQRDIPAI---QGTSQLSPYLSIGVLSPRQCWNRL 263 GE AL L + +E + + + P Q T+ LSP++ G LS R + R Sbjct: 238 RGGETEALRALDEIIANEEYTATFEKPKTAPTAFEPQSTTLLSPHMHFGSLSCRLFYWRA 297 Query: 264 KEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWN------ 317 ++ K S +L++R+ Y A P I W+ Sbjct: 298 QDVVDKFKGKASQPPVSLTGQLLFRDMYFGAQAALGYSFGQTYNNPNCRFIPWHLPSKID 357 Query: 318 ---------------KDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLV 362 + Q WK G TGFP IDA MRQL GW+H+ R A FL Sbjct: 358 TKSGLITGEYMVDNAEAEAHFQRWKHGQTGFPWIDALMRQLAQEGWIHHLGRHAVACFLT 417 Query: 363 K-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQ 421 + +DW G E F L+D + A N G WQW S ++R ++P +++D + Sbjct: 418 RGGCYIDWERGAEVFEEWLIDHEAACNIGNWQW-LSCTAFFAQFYRCYSPIAFPQKWDKE 476 Query: 422 GTFIRHWLPELNNVPTQYIHAPHSW-----------------LDKNDLSLNYPLPIVDHK 464 G +R ++PEL +YI+ PH YP P+ D Sbjct: 477 GKLVRKYVPELAKFDKKYIYEPHKAPIVDQKKWGCLIKGDGSAAAEGSMKTYPKPMFDFA 536 Query: 465 KACHHTLNQYYAAKKQSL 482 + L A +L Sbjct: 537 ERRDICLAGMKNAYHVNL 554 >gi|239994034|ref|ZP_04714558.1| deoxyribodipyrimidine photolyase, putative [Alteromonas macleodii ATCC 27126] Length = 543 Score = 276 bits (705), Expect = 8e-72, Method: Composition-based stats. Identities = 114/513 (22%), Positives = 202/513 (39%), Gaps = 42/513 (8%) Query: 5 TAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYAS 64 + SV ++W + DLR+ D++ LY A ++ ++ +F P + R FI S Sbjct: 6 SKQSVTVIWFKRDLRLRDHEPLYRAVEKNE-NILPLFCWEPSLIADPHMDMRHWQFIQQS 64 Query: 65 LLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTK-------LFYNRQYEI--- 114 + + L G C D++E + + V + +NR + Sbjct: 65 IDDINAQLPS-GARLLTLHCEVI-DALELIAQHYAISTVRSYQEIGLSVTHNRDISVSNY 122 Query: 115 -------NEVRRDKLLEKRLQHRVICKSFDDSVLLPP--GSILNHALQMYKVYTPFRKAL 165 + + + + L HR + D +N + Sbjct: 123 LKKKKINHIESQYGAVMRGLPHREQWQQNWDRHFTTKTYDIDINSVNWVDWTQHNNINTA 182 Query: 166 IQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYP-FQAIDPMFPIGEQNALHILRKFCK 224 +NL + L + + T SN R + ++ M P GE+ A +L+ F Sbjct: 183 CKNLDELGLFDCHITSQTGTHFSEKSNYYRQDVLDKLKKLNKMQPGGERRAWQVLKDFFD 242 Query: 225 EKVYYYVEQRDIP--AIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSW- 281 + YY + P A + S+LSPYL+ G LS +Q + ++ + + P S W Sbjct: 243 ARGQYYHQHISKPEYARRACSRLSPYLAWGNLSIKQVYQSVQHQKQTKKLLPNSDRKQWS 302 Query: 282 ------LNELIWREFYRHLMAFYPSVCM--GKPFIPWTEKIEWNKDSHLLQAWKQGYTGF 333 + L W + S+ I+ + W G TG+ Sbjct: 303 RALAALTSRLHWHCHFIQKFESEHSIEWRPMNSGYENFPFIDGPEAERRFYLWTMGLTGY 362 Query: 334 PIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQ 393 P++DA MR L G+++ R+R + SFL L V W Y +Q LD + + Q Sbjct: 363 PLVDACMRALKYTGYLNFRMRAMVTSFLCHHLNVHWLKAAHYLATQFLDFEPGIHYPQIQ 422 Query: 394 WAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPH------SWL 447 AS + R++NP Q + DP+G FI+ W+PEL +P++ +HAPH + + Sbjct: 423 MQASVT--GIHTVRLYNPATQSSKLDPEGVFIKKWVPELAKLPSEAVHAPHLLPPLEAQM 480 Query: 448 DKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQ 480 D+ +Y P+VD + T + + +++ Sbjct: 481 LDFDVERDYVEPLVDITENNRITAKRLWDYRER 513 >gi|239994035|ref|ZP_04714559.1| deoxyribodipyrimidine photolyase [Alteromonas macleodii ATCC 27126] Length = 435 Score = 276 bits (705), Expect = 8e-72, Method: Composition-based stats. Identities = 104/429 (24%), Positives = 181/429 (42%), Gaps = 19/429 (4%) Query: 10 HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIAT-----PEQWRQHGISARQSHFIYAS 64 L W R+DLR+ DN A+ A C +V ++I P + + + F+ + Sbjct: 17 GLYWFRHDLRLHDNAAISALCEAVQ-QVTFLYILDDKAFTPTTYGFAPMGKHRHTFLLQT 75 Query: 65 LLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLE 124 L+ +++ L++ G + D E L + + L + +E + ++ Sbjct: 76 LVDLKRQLAKLGHDLLIVKG----DPAECLVQLMKSGQYSHLGVSEHCGFDERAQLNAVK 131 Query: 125 KRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL 184 + V L ++ + +M V++PFR+ + ++ + Sbjct: 132 RFFDS-VTVIETPTFGLFDAQTLPFNIEEMPDVFSPFRRKVEKHCKPLSVHPPMDSLPSP 190 Query: 185 TGPVTPSNIPRFFDYPFQA-IDPMFPIGEQNALHILRKFCKEKVY--YYVEQRD-IPAIQ 240 P + D + F GE AL L + + Y + R+ + Q Sbjct: 191 FTPQLDESFLFAIDTDLPSPSQSSFVGGETAALTHLNTYLFDWKAAATYKDTRNALDTWQ 250 Query: 241 GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPS 300 +++LS +L+ G LS R+ ++++ + ++ + EL+WREF+ L Y + Sbjct: 251 DSTKLSAWLANGSLSAREVIRQVQQ--FEATVEKNDSTYWIYFELLWREFFHWLQCKYGA 308 Query: 301 VCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASF 360 I +K W +G TG+PI+DA MRQL G+M NR R + AS Sbjct: 309 NWFRFGGI-QGKKPSTQHCPETFALWCEGKTGYPIVDACMRQLAETGYMSNRGRQLVASC 367 Query: 361 LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDP 420 V +L DWR G +F QL+D D+ SN G W + A G+D + R FN Q + +D Sbjct: 368 FVHELRQDWRYGAAWFEHQLIDYDVGSNWGNWLYLAGVGSDPRGH-RQFNLQKQTEIYDS 426 Query: 421 QGTFIRHWL 429 G F + WL Sbjct: 427 DGQFCKKWL 435 >gi|55378668|ref|YP_136518.1| deoxyribodipyrimidine photolyase [Haloarcula marismortui ATCC 43049] gi|55231393|gb|AAV46812.1| deoxyribodipyrimidine photolyase [Haloarcula marismortui ATCC 43049] Length = 534 Score = 276 bits (705), Expect = 8e-72, Method: Composition-based stats. Identities = 115/479 (24%), Positives = 183/479 (38%), Gaps = 37/479 (7%) Query: 10 HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGIS-ARQSHFIYASLLQV 68 +VW R LRI D A+ A + V+ +F+ P + G++ + F++ L + Sbjct: 28 TVVWHREHLRIRDQGAVARAAAS--EYVLPLFVFDPAFYGADGLACDSRIRFLHDCLADL 85 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128 D ++ L + + + RD+ + ++ Sbjct: 86 SDQYHTATG---CGLTYAHGDPVDVLGRF-REAGWDIVTMAAPTGRYGRERDRRVREQCD 141 Query: 129 HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188 +F D G + + A + D ++ + + Sbjct: 142 -----VTFVDGD----GLVRDRAATRDGWQDDVSAWFAADQHDWDPSTVTSRSFDSGIDI 192 Query: 189 TPSNIPRFFDYPFQAIDPMFPIGEQN-ALHILRKFCKEKVYYYVEQRDIP--AIQGTSQL 245 + Y P G A L F E++ Y P A GTS L Sbjct: 193 STIEDH----YDIAPSKSDVPRGGTGPARERLSAF-AERIDDYPGNISAPVDARDGTSGL 247 Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305 SPYL+ G LS RQ + E D G +++ L W + Y + +P Sbjct: 248 SPYLAFGCLSVRQVIQYIDEHAPDGR-----GKEMFVSRLFWNKHYEQKLEDWPGWLETA 302 Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365 D L+ AWK G TGFP++DA+MR L GW++ R+R ++AS L Sbjct: 303 VNPVLEGFNAEQYDPDLVAAWKHGQTGFPMVDASMRCLRQTGWLNFRMRSMSASVYYHLL 362 Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425 WRIG ++F L+D A N QW + G P R++NP Q + DP G FI Sbjct: 363 QQPWRIGADWFYHHLIDASAAINYT--QWQSQCGLVGKPALRLYNPRKQVRDQDPDGEFI 420 Query: 426 RHWLPELNNVPTQYIHAPH------SWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478 R W+PEL ++P +Y+ P D+ +YP P+VD+ A +Y A + Sbjct: 421 RQWVPELESLPDEYLDRPEQTPVHVQASCGVDIGDDYPHPVVDYDAARQAFHRRYEAVR 479 >gi|225024820|ref|ZP_03714012.1| hypothetical protein EIKCOROL_01707 [Eikenella corrodens ATCC 23834] gi|224942423|gb|EEG23632.1| hypothetical protein EIKCOROL_01707 [Eikenella corrodens ATCC 23834] Length = 438 Score = 276 bits (705), Expect = 8e-72, Method: Composition-based stats. Identities = 135/464 (29%), Positives = 201/464 (43%), Gaps = 32/464 (6%) Query: 6 AMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASL 65 ++ LVW R DLR D AL AA S ++ +++ + ++AR+ +FI+ SL Sbjct: 2 SVPTTLVWFRQDLRTDDQPALQAAAR-SGRPLLGLYVW----PNEGMLTARRRYFIWQSL 56 Query: 66 LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125 +Q L++ GI + + +E R ++ R +LEK Sbjct: 57 RDLQARLAECGIPLHVREGNPVQAVVET----AAHCRAAEVVCASDGAGQGALR-AVLEK 111 Query: 126 RLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQ----ADLRSLPVPA 181 S D +L PP + + F+ A V+ + P P Sbjct: 112 ---QGCRLHSVADGLLQPPFQFIRAPYFNEPAFAAFQVAWQAACVEQYAAWQASAWPPPD 168 Query: 182 IRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQG 241 + P N+ P GE A L +F ++ YY R +PA G Sbjct: 169 LAAQQQRLPENLKTAGLPVVPRAVLTIPGGETAARRQLAEFLP-RLPYYPVLRSLPAQHG 227 Query: 242 TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSV 301 +SQLSP+L G LS R+ W A +W L REF+RH YP V Sbjct: 228 SSQLSPHLVFGTLSVRRAWAAA---------SNTPDAAAWQEALARREFWRHYFRQYPDV 278 Query: 302 CMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFL 361 +P + LL AW+QG TG+P+ DAAMR L GW+ + LR A+F Sbjct: 279 LRQD--LPEHRA-AGQANQTLLAAWQQGITGYPLADAAMRLLRDTGWLPHSLRRFCAAFF 335 Query: 362 VKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQ 421 + L W+ G +F QLLD + A+N+G WQ AA G V + FNP + ++ DP Sbjct: 336 CRVLGGRWQDGAGWFARQLLDFEPAANSGNWQLAAGLGGKQVER-QPFNPVVWSQKLDPD 394 Query: 422 GTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKK 465 G FIR LP+L ++ ++ IHAP + YP P+VD++ Sbjct: 395 GQFIRRHLPQLAHLDSRRIHAPW-LAAAEVNTNGYPAPVVDYRA 437 >gi|150026082|ref|YP_001296908.1| deoxyribodipyrimidine photolyase PhrB3 [Flavobacterium psychrophilum JIP02/86] gi|149772623|emb|CAL44106.1| Deoxyribodipyrimidine photolyase PhrB3 [Flavobacterium psychrophilum JIP02/86] Length = 430 Score = 275 bits (704), Expect = 1e-71, Method: Composition-based stats. Identities = 105/437 (24%), Positives = 186/437 (42%), Gaps = 25/437 (5%) Query: 8 SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGIS-----ARQSHFIY 62 +VW + DLR+ DN+ + A S+ ++I V+ + + ++ F+ Sbjct: 3 KTAIVWFKTDLRVEDNETIIKAILQSE-QIIPVYCFDDSHFETTKYGFKKTGSFRAQFLL 61 Query: 63 ASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKL 122 SL + K+L G + + + + + K+F R+ E + +K+ Sbjct: 62 ESLQDLDKNLRAIGSGLVITKGKPEIE----IPKIAKEYKAQKVFSKREVSFEEKKTEKM 117 Query: 123 LE-KRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPA 181 ++ + + R ++F S L + + V+T FRK Q+ + P Sbjct: 118 VQNELFKLRCELETFSTSTLYHAEDLPFSIRNIPDVFTNFRKKTEQDATIRTVFKKPEK- 176 Query: 182 IRLTGPVTPSNIPRFFDYPFQ------AIDPMFPIGEQNALHILRK--FCKEKVYYYVEQ 233 + +T ++P D + F GE A++ L F + Y + Sbjct: 177 -INSPKITTLSLPTLEDLGLECKTIDSRAAIQFKGGETEAINRLNHYFFQTNSISNYKKT 235 Query: 234 RD-IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYR 292 R+ + +S+ SP+L++G +SPR +N +K+ +L ++ + EL+WR+F+R Sbjct: 236 RNGMVGENYSSKFSPWLALGCISPRFIYNEIKKY--ELQFGANDSSYWLIFELLWRDFFR 293 Query: 293 HLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNR 352 + Y + I + + + L W G T I+A M +L G+M NR Sbjct: 294 FMFKKYQTKFFIYLGIKTEKGNSKSLNDKLFSQWINGKTKSDFINANMLELKLTGFMSNR 353 Query: 353 LRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPT 412 R AS+ +L +DWR+G YF QL+D D+ SN G W + A GND + R FN Sbjct: 354 GRQNVASYFCNELNMDWRLGAAYFEEQLIDYDVCSNWGNWAYLAGVGNDPRGH-RYFNIE 412 Query: 413 IQGKRFDPQGTFIRHWL 429 Q +D F WL Sbjct: 413 KQASDYDKNKEFRELWL 429 >gi|332520700|ref|ZP_08397162.1| cryptochrome, DASH family [Lacinutrix algicola 5H-3-7-4] gi|332044053|gb|EGI80248.1| cryptochrome, DASH family [Lacinutrix algicola 5H-3-7-4] Length = 437 Score = 275 bits (704), Expect = 1e-71, Method: Composition-based stats. Identities = 117/436 (26%), Positives = 193/436 (44%), Gaps = 24/436 (5%) Query: 8 SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGIS-----ARQSHFIY 62 LVW +NDLRI DN L A + S+ VIA++ +++ ++ F+ Sbjct: 7 KTSLVWFKNDLRINDNATLLNAVNESET-VIAIYCFDNRYFKKDKFGFKKTEKFRARFLI 65 Query: 63 ASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKL 122 ++ ++ L I + C ++SIE + L+ +++ E L Sbjct: 66 ETITDLKFQLQALNIPLFVY-CDYTENSIE---NLQNTHGFDALYLQKEWTTEENNILDL 121 Query: 123 LEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAI 182 ++K+L V + L P + + + V+T FRK L +N++ L PA Sbjct: 122 VKKKLNPNVKIHEEYNQFLFHPEDLNFNIESLPSVFTEFRKNLEKNILVRTLLPTANPAN 181 Query: 183 RLTGPVTPSNIPRFFDYPFQAIDPM------FPIGEQNALHILR-KFCKEKVYY-YVEQR 234 + +P D F F GE A L F +EK Y + R Sbjct: 182 SSYTFKNETRVPTLKDLGFSDFKIHNQSAFPFKGGETEAFKRLENYFFQEKKLGFYKKTR 241 Query: 235 D-IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRH 293 + + +S+LS +L+ G +S + + ++KE + L + + ELIWR+++++ Sbjct: 242 NGLIGTDYSSKLSAWLANGSISAKTIYWKVKE--FETLHFKNQSTYWLIFELIWRDYFKY 299 Query: 294 LMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRL 353 + + I + +W + + W T P I+A M +LN GWM NR Sbjct: 300 VSKKNNNKIFKIGGI-LDKTYQWKDNKDAVNKWINSETNEPFINANMNELNKTGWMSNRG 358 Query: 354 RMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTI 413 R AS+ K+LL+DWRIG YF S L+D D+ SN G W + + GND P R FN + Sbjct: 359 RQNVASYFAKELLLDWRIGAAYFESLLIDYDVHSNYGNWMYVSGVGND--PRNRKFNIKL 416 Query: 414 QGKRFDPQGTFIRHWL 429 Q +R+D G + WL Sbjct: 417 QAERYDANGKYQSMWL 432 >gi|255081582|ref|XP_002508013.1| predicted protein [Micromonas sp. RCC299] gi|226523289|gb|ACO69271.1| predicted protein [Micromonas sp. RCC299] Length = 450 Score = 275 bits (703), Expect = 1e-71, Method: Composition-based stats. Identities = 119/466 (25%), Positives = 199/466 (42%), Gaps = 31/466 (6%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 +VW R DLR+ DN AL+AA V+A F+ P++ + ++++ +L +Q Sbjct: 1 VVWFRQDLRVRDNPALHAAARTG-RPVVACFVWCPKEEGGWPMGGATRYWLHHALGSLQA 59 Query: 71 SLSQK--GIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128 SL + G S+ S + L + + ++ NR YE ++ RD+ E++ Sbjct: 60 SLRARNAGGTSSPSSSSSSSSSFDELAAVVRECGAKDVYCNRVYEPWKIARDRECERKFS 119 Query: 129 H--RVICKSFDDSVLLPPGSILNHALQMYKVYT-----PFRKALIQNLVQADLRSLPVPA 181 V +SF+ VL P A + F L + P P Sbjct: 120 AELNVRFRSFNAGVLYEPWDARPDATDDACWNSGYGSVRFFLRGCARLGEPPPPLPPPPT 179 Query: 182 IRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQG 241 +R+ P + ++ +P G+ N +R ++ Sbjct: 180 MRVRLPADK-RARSYTEHGGVQSNPG--NGQSNGQS--------NAPKASTERFRADVRT 228 Query: 242 TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSV 301 T+++SPY+ G LS R+ ++ K V A +L L WR+ + +P + Sbjct: 229 TARISPYVRHGELSVREVYHSAKAIQVGSRKSRARSAAVFLRRLAWRDLAYWSLWRFPRL 288 Query: 302 CMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFL 361 C +P P +W AW+ G TG+P++DA MR+L G++ N +R + A FL Sbjct: 289 C-DEPLRPQY-ATQWWALPWDPVAWQFGQTGYPLVDAGMRELWATGYVPNYVRHVVAGFL 346 Query: 362 VKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQ 421 ++ L VDWR G+ +F L+D D+A WQ +G D + + +P K DP Sbjct: 347 IEYLNVDWRHGQLWFHDTLVDADVAIQGFMWQNGGHSGMDQWNF--VMHPVYAAKSADPD 404 Query: 422 GTFIRHWLPELNNVPTQYIHAPHSWLDKN------DLSLNYPLPIV 461 G ++R W PEL+ +P +Y+H P L +YP IV Sbjct: 405 GEYVRRWCPELSGLPREYVHCPWEAPATTLAAANVALGRHYPKRIV 450 >gi|302745164|gb|ADL62685.1| cryptochrome 5 [Phreatichthys andruzzii] Length = 411 Score = 275 bits (703), Expect = 1e-71, Method: Composition-based stats. Identities = 98/411 (23%), Positives = 155/411 (37%), Gaps = 25/411 (6%) Query: 10 HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69 + W R LR+ DN AL AA + + +F+ P I + F+ +L + Sbjct: 5 SIHWFRKGLRLHDNPALLAALKDC-RHIYPLFLLDPWYPNNTHIGINRWRFLIEALKDLD 63 Query: 70 KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH 129 SL + E L + ++T+L + E RDK + K + Sbjct: 64 SSLKKLNSRLFVVSGPP----AEVLPKLFEKWKITRLTFEVDTEPYSQSRDKEVMKLAEE 119 Query: 130 RVICKSFD-DSVLLPPGSILN-HALQMYKVYTPFRKALIQNLVQADLRSLPVP------- 180 + L I+ + + Y F + P Sbjct: 120 NGVEVIPKISHTLYNIDRIIEENNGKPPMTYVRFLSVVNAIGSPKKPVPAPTKEDMKGVS 179 Query: 181 AIRLTGPVTPSNIPRFFDYPFQAIDP---MFPIGEQNALHILRKFCKEKVY--YYVEQRD 235 IP D +FP GEQ AL L + + + + + + Sbjct: 180 TPFFEDHEEEFRIPTLEDLGLDTSSLGPNLFPGGEQEALRRLDEHMERTTWVCKFEKPQT 239 Query: 236 IPA--IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRH 293 P I T+ LSPY+ G LS R W RL + + + S +L+WREF+ Sbjct: 240 SPNSIIPSTTVLSPYIRFGCLSARTFWWRLADVYRGK--QHSEPPVSLHGQLLWREFFYT 297 Query: 294 LMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRL 353 P+ + +++W+ + L AW++ TGFP IDA M QL GW+H+ Sbjct: 298 TAVGIPNFNRMEGNR-HCVQVDWDNNPEHLAAWREARTGFPFIDAIMTQLCQEGWIHHLA 356 Query: 354 RMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSV 403 R A FL + DL + W G++ F LLD D + N G WQW +++ Sbjct: 357 RHAVACFLTRGDLWISWEEGQKVFEELLLDADWSLNAGNWQWLSASAFFHQ 407 >gi|32400625|dbj|BAC78798.1| cryptochrome [Oryza sativa Japonica Group] Length = 568 Score = 275 bits (703), Expect = 1e-71, Method: Composition-based stats. Identities = 111/374 (29%), Positives = 176/374 (47%), Gaps = 19/374 (5%) Query: 126 RLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185 +I +SF+ +L P +++ Q + ++ PF + LP I Sbjct: 2 MAAEGIIVQSFNADLLYEPWEVVDDEGQSFTMFAPFWNRCLSMPYDPAAPLLPPKRINSG 61 Query: 186 G-PVTPSNIPRFFDYPFQAIDPM----FPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ 240 + PS+ F D + + + + G QN L F + +Y R Sbjct: 62 DLSMCPSDDLIFEDDSEEGSNALLARAWSPGWQNRDKALTAFLNGPLIHYSVNRKKADSA 121 Query: 241 GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFS----WLNELIWREFYRHLMA 296 TS LSPYL G LS R+ ++ ++ + + + A +L + RE+ R+L Sbjct: 122 STSLLSPYLHFGELSVRKVFHLVRMKQLVWSNEGNRAAEESCTLFLRSIGLREYSRYLSF 181 Query: 297 FYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMI 356 +P KP + W + + W+QG TG+P++DA MR+L GW+H+R+R++ Sbjct: 182 NHP-CSHEKPLLAHLRFFPWVINECYFKIWRQGRTGYPLVDAGMRELWATGWLHDRIRVV 240 Query: 357 TASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGK 416 +SF VK L + WR G +YF LLD DL S+ GWQ+ + + D RI NP ++G Sbjct: 241 VSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGSLPDGRELDRIDNPQLEGY 300 Query: 417 RFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDK------NDLSLNYPLPIV--DHKKAC- 467 +FDP G ++R WLPEL +PT++IH P +L NYPLPIV D A Sbjct: 301 KFDPHGEYVRRWLPELARLPTEWIHHPWDAPASVLQAAGVELGSNYPLPIVGLDRANARL 360 Query: 468 HHTLNQYYAAKKQS 481 L++ + + S Sbjct: 361 QEALSEMWQLEAAS 374 >gi|296135391|ref|YP_003642633.1| DNA photolyase FAD-binding protein [Thiomonas intermedia K12] gi|295795513|gb|ADG30303.1| DNA photolyase FAD-binding protein [Thiomonas intermedia K12] Length = 493 Score = 274 bits (702), Expect = 1e-71, Method: Composition-based stats. Identities = 110/483 (22%), Positives = 179/483 (37%), Gaps = 47/483 (9%) Query: 8 SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67 ++ LVW + DLR+ D+ AL+A +A+F+ PE A+ F + Sbjct: 3 TLALVWFKRDLRVQDHAALHA--AAQCDAALALFVMEPEWIASPECDAQHVQFAADCVAA 60 Query: 68 VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEI-NEVRRDKLLEKR 126 +++SL+Q G+ D + + + R T LF + + RDK + Sbjct: 61 LRESLTQAGLRLLVR----VGDVPQVFEGVRREMRFTHLFSHEETGPGWTYARDKRVAHW 116 Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 + + + P ++ + Q + A +P + Sbjct: 117 CREQGVIWQEW-----PQNGVVRRLRDRAGWAARW-----QKRMDAPQVPVPQGLRDASK 166 Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIP--AIQGTSQ 244 P+ + P D A P G AL L F + Y P A +G S+ Sbjct: 167 PLAAGDFPTLRDLRLPAARPTPAAGTAAALSTLHSFLDTRGAQYRRDLSSPLTAERGCSR 226 Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAF-------SWLNELIWREFYRHLMAF 297 LS +L+ G LS RQ ++ L + A + L W + + Sbjct: 227 LSAHLAFGTLSMRQVHQATEQRIRALQASGEPSARNMAYHLRGFAGRLRWHCHFMQKLED 286 Query: 298 YPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMIT 357 P + E + +AW G TGFP++DA MR LN GW++ R+R + Sbjct: 287 EPGIEFHNFARASDGLREPEFNPAYFEAWCSGNTGFPMVDACMRCLNATGWINFRMRAML 346 Query: 358 ASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKR 417 SF L + WR + Q LD + + Q +G + R+++P Q Sbjct: 347 VSFAAYHLWLHWREPGLHLARQFLDFEPGIHWS--QMQMQSGTTGINTLRVYSPAKQQAD 404 Query: 418 FDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477 DPQG FIR W+PE W YP PIV+ + A ++ YA Sbjct: 405 HDPQGEFIRQWVPE--------------WGTSA-----YPPPIVNERSAVKQAKDRIYAI 445 Query: 478 KKQ 480 ++ Sbjct: 446 RQS 448 >gi|282916029|ref|ZP_06323792.1| deoxyribodipyrimidine photo-lyase [Staphylococcus aureus subsp. aureus D139] gi|283769853|ref|ZP_06342745.1| deoxyribodipyrimidine photo-lyase [Staphylococcus aureus subsp. aureus H19] gi|282319977|gb|EFB50324.1| deoxyribodipyrimidine photo-lyase [Staphylococcus aureus subsp. aureus D139] gi|283460000|gb|EFC07090.1| deoxyribodipyrimidine photo-lyase [Staphylococcus aureus subsp. aureus H19] Length = 457 Score = 274 bits (702), Expect = 2e-71, Method: Composition-based stats. Identities = 134/481 (27%), Positives = 216/481 (44%), Gaps = 35/481 (7%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M++ ++ L R N D FI E S ++ + +L Sbjct: 1 MAIAVL-LNRMFRTEHNPLFEYIYQQKDDIDACYFIIAEEDMST--ASDLKAQYYRGTLQ 57 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQ---YEINEVRRDKLL 123 + +SL+++ + + S+C ++ ++++ Y + E Sbjct: 58 RFYQSLNKENLTPYVMSYD-------AVISFCEEKNISEVVVAGDIMSYHLEEYDILHQR 110 Query: 124 EKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIR 183 + Q + + +N + YKV+T F K L D+ + + Sbjct: 111 SQFDQAEITVTLVRGNHYFKASKTMNKQGEPYKVFTSFYKKWRPYLRIRDVYHYDLNELI 170 Query: 184 LTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHI--LRKFCKEKVYYYVEQRDIPAIQG 241 P+N+ D G A ++F + + Y R+ Sbjct: 171 DIVIAAPNNLK----------DVQIDAGSSQAHEQEKWQQFLEHDIQNYENGREYLPEIL 220 Query: 242 TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSV 301 TSQLS L+ G+L + +N L + + +S +++ ELI+REFY LM YP Sbjct: 221 TSQLSIALAYGLLDIIEIFNDLLARYEE----DESNYEAFIRELIFREFYYVLMTQYPES 276 Query: 302 CMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFL 361 + F P I W+++ +AW G TGFPIIDAAM +L G+MHNR+RM+ + FL Sbjct: 277 A-HQSFKPKYRHINWSENEADFKAWCDGQTGFPIIDAAMMELRQTGFMHNRMRMVVSQFL 335 Query: 362 VKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQ 421 KDL ++W GE++F L+D D SN GWQW+ASTG D+VPYFR+FNP Q +RFDP+ Sbjct: 336 TKDLFINWTWGEDFFRKYLIDYDATSNVHGWQWSASTGTDAVPYFRMFNPIRQSERFDPK 395 Query: 422 GTFIRHWLPELNNVPTQYIHAPHSWLDK-----NDLSLNYPLPIVDHKKACHHTLNQYYA 476 +I+ +LP LN + +Y+H H + +L +YP IVDH++ L + A Sbjct: 396 ALYIKTYLPVLNQIDAKYLHDTHRNESELFKQGIELGRHYPKQIVDHQEKRSQVLATFKA 455 Query: 477 A 477 Sbjct: 456 L 456 >gi|313228844|emb|CBY17995.1| unnamed protein product [Oikopleura dioica] Length = 525 Score = 274 bits (701), Expect = 2e-71, Method: Composition-based stats. Identities = 119/524 (22%), Positives = 213/524 (40%), Gaps = 57/524 (10%) Query: 1 MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQ-HGISARQSH 59 M+ L W R LR+ DN+ L AA +S+A V V+ E R I + Sbjct: 1 MERNLTRHRTLHWFRKGLRLHDNRPLLAAIRSSEA-VYCVYCLDLEWMRANERIGNNRIR 59 Query: 60 FIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRR 119 F+ SL + ++L + G + + + ++C + +T++ Y R E+ + Sbjct: 60 FLLESLTDLDENLRKIGTRLFVLRGNAR----TAIKTFCREYEITQMTYMRDAEVFYRQL 115 Query: 120 DKLLEKRLQHR-VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLP 178 + + + + R ++ +S L P I++ + ++I +L L + Sbjct: 116 EAEILEEVNRREIVTRSDHGHTLYDPQEIIDANEGQVPLSLDEFYSVIPSLDVPALPAPT 175 Query: 179 VPAIRLTGPVTPSNIPRFFDYPFQAIDPM----------FPIGEQNALHILRK------- 221 V A Y + + +P GE AL L+ Sbjct: 176 VTAEMFKSCSVRIEENHQAIYGVPTMASLGLECPRAHTRWPGGETVALERLKYKMKQNTL 235 Query: 222 --FCKEKVYYYVEQRDI--PA--------IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVD 269 F + + P T+ LSPY+++G +SPR W+ K Sbjct: 236 YEFNQGPSTSKAANHEYEIPGTSEPWFETQPETTGLSPYINLGSISPRTFWHGAKNCSEK 295 Query: 270 LLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEW------NKDSHLL 323 + + ++I+REF+ + + + + I+W + + + Sbjct: 296 MRTTVQG-------QMIYREFFYTVAYTVNNFTRIEGNR-ICKDIKWSDPKTNERAAEWI 347 Query: 324 QAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD-LLVDWRIGEEYFMSQLLD 382 + +KQG TG+P IDAA+RQ+ T GW+ + R ASFL + W +G++ F LLD Sbjct: 348 EKFKQGMTGYPWIDAAVRQMKTEGWITHISRFSLASFLTVGQMWCSWEVGQQLFEEFLLD 407 Query: 383 GDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHA 442 D A N G + W + + + +P +++D G+FIR + PEL N+PTQYI A Sbjct: 408 ADYALNAGNFLWVTGSAFANQIPVKALDPVKLARKWDTHGSFIRRYCPELKNLPTQYICA 467 Query: 443 PHSWLD------KNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQ 480 P + + ++YP P+++ LN+ A +Q Sbjct: 468 PWKAPQDVQLKARAIIGVDYPAPMLNAATMRIQNLNKIKAHNQQ 511 >gi|323438580|gb|EGA96326.1| hypothetical protein SAO11_2569 [Staphylococcus aureus O11] Length = 457 Score = 274 bits (700), Expect = 3e-71, Method: Composition-based stats. Identities = 140/479 (29%), Positives = 223/479 (46%), Gaps = 31/479 (6%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M++ ++ L R N D FI E S ++ + +L Sbjct: 1 MAIAVL-LNRMFRTEHNPLFEYIYQQKDDIDACYFIIAEEDMST--ASDLKAQYYRGTLQ 57 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 + +SL + + + S + + S+C + ++++ + +L +R Sbjct: 58 RFYQSL-------HAEKLTPYVMSYDDIISFCKENNISEVVIAGDIMSYHLEEYDILYQR 110 Query: 127 L---QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIR 183 + R+ + +N + YKV+T F K L D+ + + Sbjct: 111 SLFNEARIAVTLIRGNHYFKASKTMNQQGEPYKVFTSFYKKWRPYLRHRDVYHYDLKSFE 170 Query: 184 LTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS 243 +P ++ F D F + I EQN + F + + Y RD TS Sbjct: 171 DFVIASPDDLV-FDDIAFGSS----QIIEQN---KWQHFLEHDIQNYESGRDYLPEVLTS 222 Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCM 303 QLS L+ G+L + +N L + + +S +++ ELI+REFY LM YP Sbjct: 223 QLSIALAYGLLDIIEIFNDLLSRYEE----DESNYEAFIRELIFREFYYVLMTQYPESA- 277 Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363 + F P I W+++ +AW G TGFPIIDAAM +L G+MHNR+RM+ + FL K Sbjct: 278 HQSFKPKYRHINWSENEADFKAWCDGQTGFPIIDAAMMELRQTGFMHNRMRMVVSQFLTK 337 Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423 DL ++W GE++F L+D D ASN GWQW+ASTG D+VPYFR+FNP Q +RFDP+ Sbjct: 338 DLFINWTWGEDFFRKYLIDYDAASNVHGWQWSASTGTDAVPYFRMFNPIRQSERFDPKAL 397 Query: 424 FIRHWLPELNNVPTQYIHAPHSWLDK-----NDLSLNYPLPIVDHKKACHHTLNQYYAA 477 +I+ +LP LN + +Y+H H + +L +YP IVDH++ L + A Sbjct: 398 YIKTYLPVLNQIDAKYLHDTHRNESELFKQGIELGRHYPKQIVDHQEKRSQVLATFKAL 456 >gi|120553261|ref|YP_957612.1| DNA photolyase FAD-binding subunit [Marinobacter aquaeolei VT8] gi|120323110|gb|ABM17425.1| deoxyribodipyrimidine photo-lyase (single-stranded DNA-specific) [Marinobacter aquaeolei VT8] Length = 440 Score = 274 bits (700), Expect = 3e-71, Method: Composition-based stats. Identities = 110/431 (25%), Positives = 187/431 (43%), Gaps = 20/431 (4%) Query: 10 HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQW-----RQHGISARQSHFIYAS 64 L W DLR+ DN AL AA + ++ VF+ P + + + + F++ S Sbjct: 3 TLYWFTRDLRLHDNPALLAAARSD--MLLCVFVVDPRWFTGDRFQCRALGDHRWRFLWQS 60 Query: 65 LLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLE 124 L+ +++SL G + + L + V +L +R E + + L+ Sbjct: 61 LMALERSLRPMGQRLHI----AWGEPEVVLPELAREHGVQRLIRSRLPGTEEAAQWQALK 116 Query: 125 KRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQ-NLVQADLRSLPVPAIR 183 RL V + F+ + G + ++ ++ FRK + + LR V A+ Sbjct: 117 TRLPE-VTFQQFETLGMFAEGQLPMELAELPDTFSQFRKQVEKAEQPDHTLRIRTVSALP 175 Query: 184 LTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFC--KEKVYYYVEQRD-IPAIQ 240 N + P F GE+ L L+ F + ++ Y E R+ + Sbjct: 176 PPPGFPEDNRGQCPPIPEPIHRSPFTGGEEAGLAQLQAFVFGQHRIANYKETRNALDDWG 235 Query: 241 GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPS 300 +S+ SP+L+ G LS R+ + E + + EL+WRE++ + Sbjct: 236 SSSKFSPWLANGCLSAREVVAAI--EQYERQHTRNDSTYWLWFELLWREYFYWYALKHGG 293 Query: 301 VCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASF 360 + ++ H +AW +G T +PI++AAM QL G++ NR R + AS Sbjct: 294 RLFSRDG-VQRKRRPVTFYGHRFKAWCEGNTQYPIVNAAMNQLRETGYISNRARQLVASC 352 Query: 361 LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDP 420 L+ +L +DWR G +F QL+D D+ASN G WQ+ A G D R FN Q +++DP Sbjct: 353 LINELELDWRYGAAWFEQQLVDYDVASNYGNWQYLAGVGADPRG-LRQFNLDKQAQQYDP 411 Query: 421 QGTFIRHWLPE 431 + F+ W E Sbjct: 412 EEAFVHRWQGE 422 >gi|323441460|gb|EGA99114.1| hypothetical protein SAO46_2584 [Staphylococcus aureus O46] Length = 457 Score = 274 bits (700), Expect = 3e-71, Method: Composition-based stats. Identities = 140/478 (29%), Positives = 223/478 (46%), Gaps = 31/478 (6%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M++ ++ L R N D FI E S ++ + +L Sbjct: 1 MAIAVL-LNRMFRTEHNPLFEYIYQQKDDIDACYFIIAEEDMST--ASDLKAQYYRGTLQ 57 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 + +SL + + + S + + S+C + ++++ + +L +R Sbjct: 58 RFYQSL-------HAEKLTPYVMSYDDIISFCKENNISEVVIAGDIMSYHLEEYDILYQR 110 Query: 127 L---QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIR 183 + R+ + +N + YKV+T F K L D+ + + Sbjct: 111 SLFNEARIAVTLIRGNHYFKASKTMNQQGEPYKVFTSFYKKWRPYLRHRDVYHYDLKSFE 170 Query: 184 LTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS 243 +P ++ F D F + I EQN + F + + Y RD TS Sbjct: 171 DFVIASPDDLV-FDDIAFGSS----QIIEQN---KWQHFLEHDIQNYESGRDYLPEVLTS 222 Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCM 303 QLS L+ G+L + +N L + + +S +++ ELI+REFY LM YP Sbjct: 223 QLSIALAYGLLDIIEIFNDLLSRYEE----DESNYEAFIRELIFREFYYVLMTQYPESA- 277 Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363 + F P I W+++ +AW G TGFPIIDAAM +L G+MHNR+RM+ + FL K Sbjct: 278 HQSFKPKYRHINWSENEADFKAWCDGQTGFPIIDAAMMELRQTGFMHNRMRMVVSQFLTK 337 Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423 DL ++W GE++F L+D D ASN GWQW+ASTG D+VPYFR+FNP Q +RFDP+ Sbjct: 338 DLFINWTWGEDFFRKYLIDYDAASNVHGWQWSASTGTDAVPYFRMFNPIRQSERFDPKAL 397 Query: 424 FIRHWLPELNNVPTQYIHAPHSWLDK-----NDLSLNYPLPIVDHKKACHHTLNQYYA 476 +I+ +LP LN + +Y+H H + +L +YP IVDH++ L + A Sbjct: 398 YIKTYLPVLNQIDAKYLHDTHRNESELFKQGIELGRHYPKQIVDHQEKRSQVLATFKA 455 >gi|297624491|ref|YP_003705925.1| DNA photolyase FAD-binding protein [Truepera radiovictrix DSM 17093] gi|297165671|gb|ADI15382.1| DNA photolyase FAD-binding protein [Truepera radiovictrix DSM 17093] Length = 486 Score = 274 bits (700), Expect = 3e-71, Method: Composition-based stats. Identities = 110/492 (22%), Positives = 188/492 (38%), Gaps = 55/492 (11%) Query: 8 SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67 V+LVW + DLR+ D+ L A V+ +++ PE + S + SLL Sbjct: 6 PVNLVWFKRDLRVADHAPLREAARRG--AVLCLYVYEPEVYGAETFSGAHLELLNQSLLS 63 Query: 68 VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQY-EINEVRRDKLLEKR 126 ++ L+ +G + + L++ + L+ + + + RD+ + Sbjct: 64 LEAELAARGGRLVFR----VGEMPAVLEALHRDLPLAALYAHEETGDWASFERDRRVRAW 119 Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 + R + PF + +V+ R P + Sbjct: 120 ARSRGV---------------------------PFYEFPSAGVVRG-ARLPPPARLVAPA 151 Query: 187 PVTPSNIPRFFDYPFQAIDPMFP-IGEQNALHILRKFCKEKVYYYVEQRDIP--AIQGTS 243 V ++ P GE A L F + Y+ P A++ S Sbjct: 152 AVPAERFRTPWELGLAPSPQNLPTAGEAAARAALESFLTVRGRGYLGGISSPERALRYAS 211 Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAF------SWLNELIWREFYRHLMAF 297 +LSPYL++G LS RQ + ++L +G+ ++ L WR+ + + + Sbjct: 212 RLSPYLALGNLSVRQVFAASARRRLELRAHLGAGSRFERALLAFETRLRWRDAFIQKLEW 271 Query: 298 YPSVCM---GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLR 354 YP + F E + L+A+ G TG+P++DA MR L GW++ R+R Sbjct: 272 YPRTEFENLNRGFDGMREGLPEVLARERLEAFAAGRTGYPMVDACMRALQAGGWLNFRMR 331 Query: 355 MITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQ 414 + SF L +DWR LD + + Q + P RI++P Q Sbjct: 332 ALLVSFACYHLWLDWRPVGRLLARGWLDYEPGIHWPQLQMQSGVTGVHAP--RIYSPAKQ 389 Query: 415 GKRFDPQGTFIRHWLPELNNVPTQYIHAPHSW------LDKNDLSLNYPLPIVDHKKACH 468 + DP G FIR W+PEL +PT + P + + + +YP PIVD K A Sbjct: 390 ARDHDPTGAFIRRWVPELAGLPTHDLAEPWAAPPLVQTMLGCVVGKHYPAPIVDPKAAYA 449 Query: 469 HTLNQYYAAKKQ 480 A + + Sbjct: 450 EARRTLGAWRAR 461 >gi|119618202|gb|EAW97796.1| cryptochrome 1 (photolyase-like), isoform CRA_b [Homo sapiens] Length = 427 Score = 273 bits (699), Expect = 3e-71, Method: Composition-based stats. Identities = 92/301 (30%), Positives = 137/301 (45%), Gaps = 17/301 (5%) Query: 194 PRFFDYPFQA---IDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGT----SQLS 246 P + F ++P GE AL L + + K + +R + LS Sbjct: 34 PSLEELGFDTDGLSSAVWPGGETEALTRLERHLERKAWVANFERPRMNANSLLASPTGLS 93 Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP 306 PYL G LS R + +L + + + K S S +L+WREF+ P + Sbjct: 94 PYLRFGCLSCRLFYFKLTDLYKKVK-KNSSPPLSLYGQLLWREFFYTAATNNPRFDKMEG 152 Query: 307 FIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK-DL 365 P +I W+K+ L W +G TGFP IDA M QL GW+H+ R A FL + DL Sbjct: 153 -NPICVQIPWDKNPEALAKWAEGRTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDL 211 Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425 + W G + F LLD D + N G W W S + +F + P G+R DP G +I Sbjct: 212 WISWEEGMKVFEELLLDADWSINAGSWMW-LSCSSFFQQFFHCYCPVGFGRRTDPNGDYI 270 Query: 426 RHWLPELNNVPTQYIHAPHSWLD------KNDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479 R +LP L P +YI+ P + + K + +NYP P+V+H +A + + + Sbjct: 271 RRYLPVLRGFPAKYIYDPWNAPEGIQKVAKCLIGVNYPKPMVNHAEASRLNIERMKQIYQ 330 Query: 480 Q 480 Q Sbjct: 331 Q 331 >gi|310791567|gb|EFQ27094.1| DNA photolyase [Glomerella graminicola M1.001] Length = 628 Score = 273 bits (699), Expect = 3e-71, Method: Composition-based stats. Identities = 116/548 (21%), Positives = 192/548 (35%), Gaps = 79/548 (14%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 + W R DLR+ D+ AL AA A + +F P + + F+ + + Sbjct: 8 IYWFRTDLRLHDSPALAAALALDPAVLWPIFTWDPHYVYRARGGLNRWQFLLDCQNDLSE 67 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130 S+++ + + +VT L + + + RD+++ + Sbjct: 68 SITKLNSRSKLFVL--REGPQTLFPKLFKAWKVTHLVFEKDTDAYARERDEVVMRAASEA 125 Query: 131 VICKSFD-DSVLLPPGSIL-NHALQMYKVYTPFRKALIQNLVQADLRSLPVPAI------ 182 + L +++ H + + + A + A P Sbjct: 126 GVEVIVKSGRTLWDSDAVVAKHGGKPTMSISQLQTAGAKVGPIAKPIPAPQSLPNPGEMP 185 Query: 183 ---------------------------RLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNA 215 ++ GP I + F GE A Sbjct: 186 VDFGQTPPETEPDFNAEQRTEGDAAYAKIAGPEGDFAIETMEELGFPPASTPHRGGETRA 245 Query: 216 LHILRKFCKEKVYY--YVEQRDIPAI---QGTSQLSPYLSIGVLSPRQCWNRLKEEFVDL 270 L +L + +K Y + + + PA Q T+ +SP+L G LS R+ + R++ Sbjct: 246 LGMLEEILADKKYTATFEKPKTSPAAFEPQSTTFMSPFLHFGALSVREFYWRVRAVVDAY 305 Query: 271 LIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWN------------- 317 S L +L++R+ Y A P+ I W+ Sbjct: 306 GKGASKVPESLLGQLLFRDMYFAAHAALGYSFTQTANNPYCRFIPWHLPSKVDAKTGLVT 365 Query: 318 --------KDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK-DLLVD 368 + + WK G TGFP IDA MRQL GW+H+ R A FL + +D Sbjct: 366 GEYHVDSTQADEWFRRWKYGVTGFPWIDALMRQLREEGWIHHLGRHSVACFLTRGGCYID 425 Query: 369 WRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHW 428 W G E F LLD + A N G WQW S YFR ++P G+++D QG ++R W Sbjct: 426 WERGCEVFEEWLLDHEPACNAGNWQW-LSCTAFFSQYFRCYSPVSFGQKWDKQGAYVRRW 484 Query: 429 LPELNNVPTQYIHAPHSWLDKNDLSLN--------------YPLPIVDHKKACHHTLNQY 474 +PEL ++ +YI+ P + YP P+ D + L Sbjct: 485 VPELKDLDAKYIYEPWKAPLPDQKKAGVRVTGRGETQERGVYPKPMFDFNERRTACLAAM 544 Query: 475 YAAKKQSL 482 A + L Sbjct: 545 KKAYEVGL 552 >gi|255022957|ref|ZP_05294943.1| deoxyribodipyrimidine photolyase [Listeria monocytogenes FSL J1-208] Length = 246 Score = 273 bits (699), Expect = 4e-71, Method: Composition-based stats. Identities = 116/248 (46%), Positives = 151/248 (60%), Gaps = 13/248 (5%) Query: 239 IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFY 298 + TS LS YL G +S R W L+E + G ++ EL WR+FY + + Sbjct: 1 MDKTSHLSRYLRTGEISIRTIWQALQE------TEATEGRATFEKELCWRDFYNMIYVSF 54 Query: 299 PSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITA 358 P+ +P IEW + +AW++G TGFP++DAAMRQL GWMHNRLRMITA Sbjct: 55 PNQ-KNEPIQENYRFIEWENNREFFKAWQEGETGFPLVDAAMRQLKETGWMHNRLRMITA 113 Query: 359 SFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRF 418 SFL KDLL+DWR GE+YF L+D D ASN GGWQWAAST D+VPYFRIFNPT Q ++F Sbjct: 114 SFLTKDLLIDWRFGEKYFQQMLIDYDPASNIGGWQWAASTATDAVPYFRIFNPTTQAQKF 173 Query: 419 DPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND------LSLNYPLPIVDHKKACHHTLN 472 DP G FIR ++ EL N+P +YIH P + L +YP P+VDHK+ + Sbjct: 174 DPTGKFIRKYVKELANLPDKYIHQPEKMSETVQKEHGLILGKDYPFPLVDHKERRKLAIA 233 Query: 473 QYYAAKKQ 480 +Y +K+ Sbjct: 234 RYEFSKEH 241 >gi|257373039|ref|YP_003175813.1| deoxyribodipyrimidine photo-lyase [Halomicrobium mukohataei DSM 12286] gi|257167763|gb|ACV49455.1| Deoxyribodipyrimidine photo-lyase [Halomicrobium mukohataei DSM 12286] Length = 526 Score = 273 bits (699), Expect = 4e-71, Method: Composition-based stats. Identities = 116/483 (24%), Positives = 197/483 (40%), Gaps = 39/483 (8%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGIS-ARQSHFIYASLLQVQ 69 +VW R +LR TD+ AL A D V+ +F+ P+ + G++ + ++ S+ ++ Sbjct: 23 VVWHRRNLRTTDHGALSYAGEEYDT-VLPLFVFDPQFYGNDGLACDARLLLLHESVESLR 81 Query: 70 KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH 129 + G Y D + L + + +RD Sbjct: 82 RLYEAVGGTLSYAHG----DPLSVLSAL-AAAGWDIVATADPTARYGRQRDDRAAAHCDV 136 Query: 130 RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189 R F DS G + + A + D + + L G V+ Sbjct: 137 R-----FVDSD----GLVRDQAWPRAGWSDRVEAWFESSPHSWDPADVSFAS--LPGTVS 185 Query: 190 PSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIP--AIQGTSQLSP 247 ++I R +D A + P G LR+F + + Y P A GTS LSP Sbjct: 186 VADIERTYDV-HAAKTTVPPGGRAAGARRLRQFVAD-IEQYPGNISAPTDARTGTSGLSP 243 Query: 248 YLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPF 307 +L G LS R+ + + + P +G +++ L W + Y + + Sbjct: 244 HLRFGSLSVREVYRYVMDNAP-----PCTGREMFVSRLYWNKHYHQKLEDWSGWTTTAVN 298 Query: 308 IPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLV 367 + D L+ AWK+G TGFP++DA+MR L GW++ R+R + AS Sbjct: 299 PAMRGCRAESHDPELVTAWKRGTTGFPMVDASMRCLVETGWLNFRMRAMCASVFADLFQQ 358 Query: 368 DWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRH 427 W+IG +++ L+D D A N QW + G RI+NP Q + DP GTF+ Sbjct: 359 PWQIGADFYHYHLIDADPAINYT--QWQSQAGTVGTNLMRIYNPIKQVRDNDPDGTFVST 416 Query: 428 WLPELNNVPTQYIHAPHS------WLDKNDLSLNYPLPIVDHKKACHHTLNQYY----AA 477 ++PEL +P +Y+ P ++ +YP P+V+++ A + +Y AA Sbjct: 417 YVPELAPLPAEYLPRPEKTPLHVQEACGVEIGTDYPYPVVEYEAARQRAIERYERLEPAA 476 Query: 478 KKQ 480 ++ Sbjct: 477 RQA 479 >gi|311696907|gb|ADP99780.1| deoxyribodipyrimidine photolyase [marine bacterium HP15] Length = 440 Score = 273 bits (698), Expect = 4e-71, Method: Composition-based stats. Identities = 107/429 (24%), Positives = 184/429 (42%), Gaps = 21/429 (4%) Query: 10 HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQW-----RQHGISARQSHFIYAS 64 L W DLR+ DN +L AA + ++ +++ P + + + + F++ S Sbjct: 3 TLYWFTRDLRLHDNASLLAASKSD--MLLCLYVVDPRWFAPGPLQSKAMGDHRWRFLWQS 60 Query: 65 LLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLE 124 L+ +++SL G F + + + ++ +R E + + ++ Sbjct: 61 LMALERSLRPLGQRLHI----AFGEPETVIPQLAHAHSIERVVRSRLPGTQEAGQWQAIK 116 Query: 125 KRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQAD--LRSLPVPAI 182 RL V + F+ L GS+ ++ ++ FRK + + + LR + A+ Sbjct: 117 DRLPKAV-FQQFETLSLFTEGSLPMALEELPDTFSQFRKQVEKTGDRCSERLRIRTLTAL 175 Query: 183 RLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFC--KEKVYYYVEQRD-IPAI 239 N P F GE L L++F + Y E R+ + Sbjct: 176 PPPPGFPEDNRGDCPPIPEPVHPLQFMGGEAAGLARLQEFLYGNHSIDRYKETRNALDTW 235 Query: 240 QGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYP 299 +S+ SP+L+ G LS R+ + E + + EL+WRE++ + Sbjct: 236 DASSKFSPWLANGCLSVREVAETITEY--EASETKNESTYWLWFELLWREYFYWYALKHG 293 Query: 300 SVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITAS 359 + + ++ H +AW QG T +PI++AAM QL G+M NR R + AS Sbjct: 294 ANLFRRDG-VQRKRRHGTFYGHRFKAWCQGNTEYPIVNAAMNQLRETGYMSNRARQLVAS 352 Query: 360 FLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFD 419 + +L +DWR G +F QL+D D+ SN G WQ+ A G D R FN Q +++D Sbjct: 353 CFINELGLDWRYGAAWFEEQLIDYDVGSNYGNWQYLAGVGADPRG-LRQFNLEKQTQQYD 411 Query: 420 PQGTFIRHW 428 P GTFI W Sbjct: 412 PTGTFIDRW 420 >gi|331227925|ref|XP_003326630.1| cryptochrome DASH [Puccinia graminis f. sp. tritici CRL 75-36-700-3] gi|309305620|gb|EFP82211.1| cryptochrome DASH [Puccinia graminis f. sp. tritici CRL 75-36-700-3] Length = 596 Score = 273 bits (698), Expect = 5e-71, Method: Composition-based stats. Identities = 143/590 (24%), Positives = 222/590 (37%), Gaps = 132/590 (22%) Query: 8 SVHLVWLRNDLRITDNKALYA----------ACHNSDAK--VIAVFIATPEQ-------- 47 S+ + RNDLR+ DN L A + V+ +++ Q Sbjct: 7 SLTIALFRNDLRLHDNPILTHSHLATVKEGDAVRRNKVSEYVLPLYVFDERQIELSGLEG 66 Query: 48 WRQHGISAR------------QSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLD 95 +RQHG AR + +F+ S+ +++ L + G +++ ++ Sbjct: 67 YRQHGGPARTEVCGFWRTGSHRLNFLCQSVYELKHQLKKSGSDLLVRFGVVEATTLKIIE 126 Query: 96 SYCLQ-QRVTKLFYNRQYEINEVRRDKLLEKRL---QHRVICKSFDDSVLLPPGSILNHA 151 V ++ ++ EV +K L K L H+V F L+ P + Sbjct: 127 ELQRNGFSVDHVYMAKEVAFEEVGTEKRLAKLLGELAHKVPLTLFHSRSLVHPDDLPFTI 186 Query: 152 LQMYKVYTPFRKALIQNLVQADLRSL-PVPAIRLTGPVTPSNIPRFFDYPF--------Q 202 + VYTPFR + R L P+P P P I + P Q Sbjct: 187 NKTPDVYTPFRSKVESLPADQLCRPLLPLPEKLQPFPALPETILKAAPEPGYSGSLCEGQ 246 Query: 203 AIDPMF-----------------------------------PIGEQNALHILRKFC---- 223 D +F GE AL L + Sbjct: 247 GFDEVFARLVKPLLSNPDIPHDPKEANTQDYKPDPRSAFPYQGGESEALRRLDDYFFKGN 306 Query: 224 KEKVYYYVEQRD-IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWL 282 + V Y R+ + Q +++ SP+L+ G +SPR+ + L + + + L Sbjct: 307 QPPVRSYKTTRNGLLGHQYSTKFSPFLAFGCISPRKIIHSLWDH--EAKFGSNKDTYWVL 364 Query: 283 NELIWREFYRHLMAFYPS--------------------VCMGKPFIP-----WTEKIEWN 317 E++WR+++ + + + KPF ++ E Sbjct: 365 FEILWRDYFIFISQKFGRRLFLIKGFEGRIDPKGATKKLSYWKPFKDEKMNQQSKGKETP 424 Query: 318 KDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFM 377 D + L + G TG P IDA M +L G+M NR R ASFL KDL +DWRIG E+F Sbjct: 425 VDRNALAWLR-GKTGVPFIDANMIELRESGFMSNRGRQNVASFLAKDLELDWRIGAEWFE 483 Query: 378 SQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPT 437 S LLD D SN G WQ+ A GND R FNP Q K +D QG +++HW+P+L + PT Sbjct: 484 SALLDYDPCSNYGNWQYVAGVGNDPR-TSRQFNPIKQAKDYDSQGDYVKHWIPDLKSFPT 542 Query: 438 QYIHAPHSWLD-----------------KNDLSLNYP-LPIVDHKKACHH 469 I +P K +YP PI++ + H Sbjct: 543 NRIQSPWLMNSQEWDKHLGSSTKEDKENKTGQKDDYPRRPILEQQAWKKH 592 >gi|283469986|emb|CAQ49197.1| FAD binding domain of DNA photolyase protein [Staphylococcus aureus subsp. aureus ST398] Length = 457 Score = 273 bits (698), Expect = 5e-71, Method: Composition-based stats. Identities = 139/479 (29%), Positives = 230/479 (48%), Gaps = 31/479 (6%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M++ ++ L R+ N L+ + + A + PE+ S ++ F +L Sbjct: 1 MAIAVL-LNRMFRMEHNP-LFEYIYQQKEDIDACYFIIPEE-DMSSASDLKAQFYRGTLQ 57 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 + +SL + + + S + + S+C + ++++ + +L +R Sbjct: 58 RFYQSL-------HAEKLTPYVMSYDDIISFCKENNISEVVIAGDIMSYHLEEYDILHQR 110 Query: 127 L---QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIR 183 + R+ + +N + YKV+T F K L D+ + + Sbjct: 111 SLFNEARIAVTLIRGNHYFKASKTMNQQGEPYKVFTSFYKKWRPYLRHRDVYHYDLKSFE 170 Query: 184 LTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS 243 +P ++ F D F + I EQN + F + + Y RD TS Sbjct: 171 DFVIASPDDLV-FDDIAFGSS----QIIEQN---KWQHFLDQDIQNYESGRDYLPEVLTS 222 Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCM 303 QLS L+ G+L + +N L + + ++ +++ ELI+REFY LM YP Sbjct: 223 QLSVALAYGLLDIIEIFNDLLARY----DEDEANYEAFIRELIFREFYYVLMTQYPETSY 278 Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363 + F P +I+W+++ AW +G TGFPIIDAA+ +L G+MHNR+RM+ + FL K Sbjct: 279 -QAFKPKYRQIKWSQNEADFNAWCEGQTGFPIIDAAIMELTQTGFMHNRMRMVVSQFLTK 337 Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423 DL +DW GE++F L+D D ASN GWQW+ASTG D+VPYFR+FNP Q +RFDP+ Sbjct: 338 DLFIDWTWGEKFFRKHLIDYDAASNIHGWQWSASTGTDAVPYFRMFNPIRQSERFDPKAL 397 Query: 424 FIRHWLPELNNVPTQYIHAPHSWLDK-----NDLSLNYPLPIVDHKKACHHTLNQYYAA 477 +I+ +LP N + +Y+H H + +L +YP IVDH++ L + A Sbjct: 398 YIKTYLPIFNQIDAKYLHDTHRNESELFKQGIELGRHYPKQIVDHQEKRSQVLATFKAL 456 >gi|224102189|ref|XP_002312581.1| predicted protein [Populus trichocarpa] gi|222852401|gb|EEE89948.1| predicted protein [Populus trichocarpa] Length = 573 Score = 273 bits (697), Expect = 6e-71, Method: Composition-based stats. Identities = 111/449 (24%), Positives = 190/449 (42%), Gaps = 59/449 (13%) Query: 6 AMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASL 65 + S +VW R DLRI DN AL A D V VFI P++ Q ++ S Sbjct: 2 SSSKTIVWFRRDLRIEDNPAL--AASARDGCVFPVFIWCPKE-GQFYPGRVSRWWLKQSF 58 Query: 66 LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125 Q+ +SL ++ L T + +N Y+ + RD +++ Sbjct: 59 AQLGQSLE-------------ISCTVGALLDSIETIGATTVAFNHLYDPVSLVRDHNIKE 105 Query: 126 RLQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL 184 +L I +S++ +L P I + + + +R ++ P + Sbjct: 106 KLVELGIFVQSYNGDLLYEPWEIYDERGYAFTTFEAYRDKCWHMQMEPVSHLPPWRLVPA 165 Query: 185 TGPVTPSNIPRF--FDYPFQAIDPM----FPIGEQNALHILRKFCKEKVYYYVEQRDIPA 238 G + ++ D ++ + + + G NA + + +V + Sbjct: 166 AGTIVMCSVEELGLEDEAEKSSNSLLGRGWSPGWGNAHLVGHAKSRLRVGSF-------- 217 Query: 239 IQGTSQLSPYLSIGVLSPRQCWNRLKEEF----VDLLIKPKSGAFSWLNELIWREFYRHL 294 +S LSPYL G LS R+ + ++ + + K +L + RE R+L Sbjct: 218 ---SSLLSPYLHFGELSVRKVFWCVQMKQLLWSKEENSVGKESVTQFLRSIGLRECSRYL 274 Query: 295 MAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLR 354 +P + + + WN + +AW+QG TG+P++D MR+L IGW+HNR+R Sbjct: 275 CFNFP-FTHERLLLSNLKYFPWNANQVHFKAWRQGRTGYPLVDDGMRELWAIGWIHNRIR 333 Query: 355 MITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQ 414 I +SF VK LL+ WR G ++ GWQ+ + + D+ R+ NP IQ Sbjct: 334 AIVSSFAVKVLLLPWRWGL-------------NDILGWQYISGSLPDAHELERLDNPEIQ 380 Query: 415 GKRFDPQGTFIRHWLPELNNVPTQYIHAP 443 G +FDP+G + L +PT++IH P Sbjct: 381 GSKFDPEGEY-------LTRMPTEWIHHP 402 >gi|240047725|ref|YP_002961113.1| hypothetical protein MCJ_006150 [Mycoplasma conjunctivae HRC/581] gi|239985297|emb|CAT05310.1| HYPOTHETICAL Deoxyribodipyrimidine photo-lyase [Mycoplasma conjunctivae] Length = 434 Score = 273 bits (697), Expect = 6e-71, Method: Composition-based stats. Identities = 129/474 (27%), Positives = 222/474 (46%), Gaps = 52/474 (10%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAK-VIAVFIATPEQW--RQHGISARQSHFIYASL 65 +++ D+R+ DN L ++ + + FI +Q + S + F+ +L Sbjct: 1 MNIFLFHRDIRVEDNLGLLNLVEETNGENIFLFFIYNKKQLYEKNEYFSQKAFDFLNNAL 60 Query: 66 LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125 + + K + I Y + + IE + ++ +++ N+ + + RDK L++ Sbjct: 61 INLSK---KVNINLFYAE-----NEIEVFEEILQANKIERIYINKDWSDFALARDKDLKQ 112 Query: 126 RLQ-HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL 184 Q + +I K F+D +L PG ILN++ YKV+TPF + LV+ + Sbjct: 113 FCQKNNIIFKEFNDYLLFRPGDILNNSNSFYKVFTPFYNNCVSKLVENLPTV--KKTLHF 170 Query: 185 TGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244 + ++ F F+ FP N++ + + K ++ Y + R+ AI + Sbjct: 171 YTQIYKNSKSCSFLQEFKYFQTFFP----NSIDQILEILKNNIHDYAKNRNNLAIDSN-K 225 Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHL--MAFYPSVC 302 +SP + G++S RQ + +E ++ + + +LIWREFY H +A + Sbjct: 226 ISPAIRFGIISIRQLLLYVYQETKNINHE-------LIRQLIWREFYYHFNFLASQTNWN 278 Query: 303 MGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLV 362 G P+ +E+N+ L+ WK+G TGFP+IDAA+++L G+MHNR RM+ ASFL Sbjct: 279 FGNPWNRKFYFLEYNQADEKLKLWKEGKTGFPLIDAAIQELLQTGFMHNRARMVVASFLT 338 Query: 363 KDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQG 422 K+L +DW GE++F L+D D N+ WQW A G D+ + RIFNP +Q K+FD Sbjct: 339 KNLFIDWHEGEKFFAQHLIDYDPIINHHSWQWVAGCGVDAQLFTRIFNPILQQKKFDSNN 398 Query: 423 TFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNY-PLPIVDHKKACHHTLNQYY 475 +I +LP NY PIVD + + + Sbjct: 399 YYISKFLP-----------------------TNYQTKPIVDLHETSNKIKKVFQ 429 >gi|56459233|ref|YP_154514.1| deoxyribodipyrimidine photolyase [Idiomarina loihiensis L2TR] gi|81821701|sp|Q5QXE0|CRYD_IDILO RecName: Full=Cryptochrome DASH gi|56178243|gb|AAV80965.1| Deoxyribodipyrimidine photolyase [Idiomarina loihiensis L2TR] Length = 449 Score = 273 bits (697), Expect = 6e-71, Method: Composition-based stats. Identities = 115/440 (26%), Positives = 188/440 (42%), Gaps = 20/440 (4%) Query: 10 HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQ-----WRQHGISARQSHFIYAS 64 L RNDLR+ DN ALY A S+ +I F P Q + + + F+ S Sbjct: 17 GLFVFRNDLRVEDNLALYEAAQRSET-LICCFCFNPTQNKYGHYGIPAMGKHRFTFLQQS 75 Query: 65 LLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLE 124 L Q++ L +G + L +++V +F ++ E + LL+ Sbjct: 76 LKQLRTELEMRGQKLIVLTGTFD----RILTELISERQVDAIFLSQHQGYYERLQLGLLQ 131 Query: 125 KRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL 184 +R + ++ L + + + ++ FRK + + + PV A+ Sbjct: 132 QRFP-FLPFHETPNNTLFSEQELPFELADLPETFSQFRKKVE--PLSRNFSVQPVNALPS 188 Query: 185 TGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYY-YVEQRD-IPAIQGT 242 + A D F GE+ AL L + + Y + R+ + + Sbjct: 189 LPKNISYPGFKAETLNELASDD-FEGGERAALTHLTSYFSGESAGTYKQTRNALDDFSSS 247 Query: 243 SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVC 302 ++ SP+L+ G LS RQ L+ + S S+ EL+WRE++ + Sbjct: 248 TKFSPWLAQGCLSVRQIMAALRAYETEFGENESSYWISF--ELLWREYFFWYALKHGKRL 305 Query: 303 MGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLV 362 + + + + S Q W G T +PI++A M+QLN G+M NR R + AS V Sbjct: 306 FAFSGLSG-KSPKTSFYSERFQKWCSGNTPYPIVNACMKQLNATGYMSNRGRQLVASCFV 364 Query: 363 KDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQG 422 +L +DWR G YF QL+D D++SN G WQ+ A G D + R FN Q +R+DP Sbjct: 365 HELSLDWRYGAAYFEQQLIDYDVSSNWGNWQYLAGVGADPRGH-RQFNLEKQTERYDPDN 423 Query: 423 TFIRHWLPELNNVPTQYIHA 442 FI W +L+ P + A Sbjct: 424 EFIERWAGDLSGQPIDSVDA 443 >gi|126662376|ref|ZP_01733375.1| probable bacterial cryptochrome [Flavobacteria bacterium BAL38] gi|126625755|gb|EAZ96444.1| probable bacterial cryptochrome [Flavobacteria bacterium BAL38] Length = 440 Score = 273 bits (697), Expect = 7e-71, Method: Composition-based stats. Identities = 114/444 (25%), Positives = 198/444 (44%), Gaps = 34/444 (7%) Query: 10 HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGIS-----ARQSHFIYAS 64 LVW RNDLR DN +LY AC +D VI ++ P + +S F+ + Sbjct: 9 GLVWFRNDLRTIDNHSLYNACRENDT-VIGIYCLDPRHFEITPFGFKKTEKFRSQFLLET 67 Query: 65 LLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLE 124 + ++QK+L +K I + + + + ++ ++ ++ E ++ + Sbjct: 68 VTELQKNLLEKNIRLLVY----YGYPEILIPEIIAKYQIHSIYSQHEWTSEENEIEQEIR 123 Query: 125 KRLQHRVICKSFDDSVLLPPGSILNHALQ-MYKVYTPFRKALIQNLVQADLRSL-PVPAI 182 + V K+ D L P + + + +V+T FRK + + + ++ P P Sbjct: 124 NLISA-VNWKNHYDQFLFHPADLPFEDWKKIPEVFTDFRKQIEKKIRVRPTVAISPKPLT 182 Query: 183 RLTGPVTPSNIPRFFDYPFQAIDPMFP----------IGEQNALHILRKFCKE--KVYYY 230 L TP IP D F + F GE +A ++ + + K+ Y Sbjct: 183 NLIEETTP--IPTLKDLGFDSEASDFKQPEKTAFPFKGGENHAKKRIKDYFWDTKKLAVY 240 Query: 231 VEQRD-IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWRE 289 + R+ + +S+LS +L+ G +S R + +++ ++ + + ELIWR+ Sbjct: 241 KKTRNGLIGKNYSSKLSAWLANGSVSARTIYWEVQKFEKKVI--KNEDTYWLIFELIWRD 298 Query: 290 FYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWM 349 +++++ + + I ++ WN++ W G T ++A M +L GWM Sbjct: 299 YFKYISLKHGNKIFQLNGI-LQKEYHWNQNKKAFNQWANGTTPEHFVNANMIELQKTGWM 357 Query: 350 HNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIF 409 NR R AS+ K+ DWRIG YF S L+D D+ SN G W + A GND P R F Sbjct: 358 SNRGRQNVASYWAKEWEQDWRIGAAYFESMLIDYDVHSNYGNWMYNAGVGND--PRDRKF 415 Query: 410 NPTIQGKRFDPQGTFIRHWL-PEL 432 N Q + +D G F + WL PEL Sbjct: 416 NIKRQAEMYDADGKFQKMWLIPEL 439 >gi|82750393|ref|YP_416134.1| DNA photolyase [Staphylococcus aureus RF122] gi|82655924|emb|CAI80328.1| probable DNA photolyase [Staphylococcus aureus RF122] Length = 459 Score = 272 bits (696), Expect = 8e-71, Method: Composition-based stats. Identities = 136/482 (28%), Positives = 217/482 (45%), Gaps = 35/482 (7%) Query: 7 MSVHL-VWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASL 65 M + + V L R N D FI E S ++ F +L Sbjct: 1 MFMAIAVLLNRMFRTEHNPLFEYIYQQKDDIDACYFIIAEEDMST--ASDLKAQFYRGTL 58 Query: 66 LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125 + +SL + + + S + + S+C + ++++ + +L + Sbjct: 59 QRFYQSL-------HAEKLTPYVMSYDDIISFCKENNISEVVIAGDIMSYHLEEYDILHQ 111 Query: 126 RL---QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAI 182 R + R+ + +N + YKV+T F K L D+ + + Sbjct: 112 RSLFNEARIAVTLIRGNHYFKASKTMNQQGEPYKVFTSFYKKWRPYLRIRDVYHYDLNEL 171 Query: 183 RLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHI--LRKFCKEKVYYYVEQRDIPAIQ 240 P+N+ D G A ++F + + Y R+ Sbjct: 172 IDIVIAAPNNLK----------DVQIGAGSSQAHEQEKWQQFLEHDIQNYENGREYLPEI 221 Query: 241 GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPS 300 TSQLS L+ G+L + +N L + + +S +++ ELI+REFY LM YP Sbjct: 222 LTSQLSIALAYGLLDIIEIFNDLLSRYEE----DESNYEAFIRELIFREFYYVLMTQYPE 277 Query: 301 VCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASF 360 + F P I W+++ +AW G TGFPIIDAAM +L G+MHNR+RM+ + F Sbjct: 278 SA-HQSFKPKYRHINWSENEADFKAWCDGQTGFPIIDAAMMELRQTGFMHNRMRMVVSQF 336 Query: 361 LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDP 420 L K+L ++W GE++F L+D D ASN GWQW+ASTG D+VPYFR+FNP Q +RFDP Sbjct: 337 LTKNLFINWTWGEDFFRKYLIDYDSASNVHGWQWSASTGTDAVPYFRMFNPIRQSERFDP 396 Query: 421 QGTFIRHWLPELNNVPTQYIHAPHSWLDK-----NDLSLNYPLPIVDHKKACHHTLNQYY 475 + +I+ +LP LN + +Y+H H + +L +YP IVDH++ L + Sbjct: 397 KALYIKTYLPVLNQIDAKYLHDTHQNESELFKQGIELGRHYPKQIVDHQEKRSQVLATFK 456 Query: 476 AA 477 Sbjct: 457 TL 458 >gi|158318950|ref|YP_001511458.1| deoxyribodipyrimidine photo-lyase [Frankia sp. EAN1pec] gi|158114355|gb|ABW16552.1| Deoxyribodipyrimidine photo-lyase [Frankia sp. EAN1pec] Length = 409 Score = 272 bits (695), Expect = 1e-70, Method: Composition-based stats. Identities = 135/469 (28%), Positives = 191/469 (40%), Gaps = 68/469 (14%) Query: 13 WLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQKSL 72 WLR DLR+ DN AL AA + +V+A+F+ R + F++ L + Sbjct: 3 WLRRDLRLDDNPALLAAAESG--RVLALFVLDDALRR--PSGPVRLAFLHRCLRDLD--- 55 Query: 73 SQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHRVI 132 +Q G Sbjct: 56 AQLGGRL----------------------------------------------------- 62 Query: 133 CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPSN 192 C + PG + Y+V+TPF +A ++ + ++P + L Sbjct: 63 CVRTGSPYAVAPGRLRKADGTSYRVFTPFYRAWKEHGWRGP--AIPADPVWLQPADLDGG 120 Query: 193 IPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS---QLSPYL 249 P + P GE A LR F E + Y RD PA S Sbjct: 121 SEPIPADPELGGTELPPAGEHAAHERLRAFLTESLAGYAAHRDEPAAASESGDAVPGWSG 180 Query: 250 SIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIP 309 + + A + +EL WREFY ++A PS Sbjct: 181 ASRAGGAGGAGGAGGADAAGGGGGLAGSAEKFRSELAWREFYADVLAGTPSSART-DLTD 239 Query: 310 WTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDW 369 + + +AWK G TG+PI+DA MRQL GW+HNR+RMI ASF+ KDL V Sbjct: 240 TLAALAYEPPGDTFEAWKWGRTGYPIVDAGMRQLLAEGWVHNRVRMIEASFVCKDLNVHR 299 Query: 370 RIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWL 429 G +++ +L+DGDLASNN GWQW A TG D+ PYFR+FNP QG++FDP G +IR W+ Sbjct: 300 THGARWYLERLVDGDLASNNHGWQWTAGTGTDAAPYFRVFNPVSQGRKFDPAGEYIRRWV 359 Query: 430 PELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478 PEL +P +H P W YP P+VDH L+++ A+ Sbjct: 360 PELRGLPPDAVHEP--WKLPAGPPNGYPRPVVDHAVERREALDRHARAR 406 >gi|332292004|ref|YP_004430613.1| cryptochrome, DASH family [Krokinobacter diaphorus 4H-3-7-5] gi|332170090|gb|AEE19345.1| cryptochrome, DASH family [Krokinobacter diaphorus 4H-3-7-5] Length = 432 Score = 271 bits (694), Expect = 1e-70, Method: Composition-based stats. Identities = 107/436 (24%), Positives = 195/436 (44%), Gaps = 24/436 (5%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGIS-----ARQSHFI 61 M LVW RN+LR DN +L A S +VI ++ P Q++ ++ F+ Sbjct: 1 MDTALVWFRNNLRTQDNSSLTHAIA-SGKRVIGLYSFDPRQFQIGDFGFKKTEKYRAQFL 59 Query: 62 YASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDK 121 ++ ++K+L+ I + + Q V++++ +++ E Sbjct: 60 IETVQNLKKNLNDLNITLIV----THEHPEVTIPDLIDQHDVSEIYSQKEWTREENEVTI 115 Query: 122 LLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQ----NLVQADLRSL 177 +E+++ + +D + P + N + +V+T FRK + +Q +++L Sbjct: 116 AVEEKINNAKHYTHYDQFLFHPEDNPFNSFGDIPQVFTQFRKKCEKESTVQRLQEKIKTL 175 Query: 178 PVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFP--IGEQNALHILRKFCKE--KVYYYVEQ 233 P + P+ D + FP GE A + L + K+ YY + Sbjct: 176 PSKNLLDKESSIPNLQELGLDTFTKDHRSAFPWNGGEDEAWNRLNNYFWNTKKLQYYKKT 235 Query: 234 RD-IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYR 292 R+ + +S+LS +L+ G +S RQ + +K+ +++ + + ELIWR++++ Sbjct: 236 RNGLVGEDYSSKLSAWLANGSISARQIYWEVKKFEKEII--SNQDTYWLIFELIWRDYFK 293 Query: 293 HLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNR 352 ++ + + I + +W ++ + W G T + ++A M +L GWM NR Sbjct: 294 YVSLKHGNDLFKIGGI-LHKNYDWKRNDKAQREWIHGNTTYDFVNANMIELKETGWMSNR 352 Query: 353 LRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPT 412 R ASF K+ DWR+G YF S L+D D+ SN W + A GND P R FN Sbjct: 353 GRQNVASFWAKEQQQDWRVGAAYFESVLIDYDVHSNWANWMYNAGVGND--PRDRKFNIK 410 Query: 413 IQGKRFDPQGTFIRHW 428 Q + +D G F+R W Sbjct: 411 RQQEMYDGNGKFVRLW 426 >gi|225011847|ref|ZP_03702285.1| cryptochrome, DASH family [Flavobacteria bacterium MS024-2A] gi|225004350|gb|EEG42322.1| cryptochrome, DASH family [Flavobacteria bacterium MS024-2A] Length = 433 Score = 271 bits (694), Expect = 1e-70, Method: Composition-based stats. Identities = 114/437 (26%), Positives = 190/437 (43%), Gaps = 24/437 (5%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQ-----WRQHGISARQSHFI 61 M LVWLRNDLR D + + AC + +V+A F P+ W ++HF+ Sbjct: 1 MKTALVWLRNDLRFEDQNSFFTACQEHE-RVVAYFSFEPKDYDKTMWGFTKTGKFRTHFL 59 Query: 62 YASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDK 121 +L +Q L K I S WLD Q + T LF+ ++ E Sbjct: 60 LETLRSLQTELENKNISLIVENRSAATGIPFWLD----QLKATALFFQEEWTFEEKMISD 115 Query: 122 LLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPA 181 + ++ + + S D L P + + KV+T FRK + S P Sbjct: 116 AVVNQISNDINVYSHYDQFLYHPEDVSMEIQSIPKVFTEFRKKCEKFSNIRPCFSAPKVL 175 Query: 182 IRLTGPVTPSNIPRFFDYPFQAIDPM------FPIGEQNALHILRKFCKE--KVYYYVEQ 233 + + +P D+ F F G + L+ + ++ YY + Sbjct: 176 NKSSLLSETPAMPVLEDFEFTPFTHHANSAFPFKGGMVSGNDHLQNYFWNTKRLSYYKQT 235 Query: 234 RD-IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYR 292 R+ + + +S+ SP+L+ G LS R + + ++ K + + EL+WR++++ Sbjct: 236 RNGLVGVGYSSKFSPWLANGSLSARVIYWEVMRYEKEV--KKNESTYWLIFELLWRDYFK 293 Query: 293 HLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNR 352 ++ + + I ++ WN W +G T P ++A M +L G+M NR Sbjct: 294 YISLKHGNSIFHLGGI-LKKEYTWNSKQEDFLKWVEGETAEPFVNANMIELKKTGFMSNR 352 Query: 353 LRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPT 412 R AS+ K++++DWR+G YF QL+D D+ SN G W + A GND P R FN Sbjct: 353 GRQNVASYFAKNMMMDWRMGAAYFERQLVDYDVHSNWGNWMYVAGVGND--PRDRKFNIK 410 Query: 413 IQGKRFDPQGTFIRHWL 429 +Q +R+D G + WL Sbjct: 411 LQAERYDSNGKYQNLWL 427 >gi|328857597|gb|EGG06713.1| hypothetical protein MELLADRAFT_48359 [Melampsora larici-populina 98AG31] Length = 579 Score = 271 bits (692), Expect = 2e-70, Method: Composition-based stats. Identities = 134/577 (23%), Positives = 220/577 (38%), Gaps = 116/577 (20%) Query: 6 AMSVHLVWLRNDLRITDNKALYAACHNSDAKV------------IAVFIATPEQWRQHGI 53 A SV + RNDLR+ DN ++ A +S V + +++ G+ Sbjct: 2 AKSVTIALFRNDLRVHDNPIIFHAHSSSQKGVDKTRVQRPSDYYLPIYVFDERMVELSGL 61 Query: 54 --------------------SARQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEW 93 + F+ S+ ++Q L Q+G S ++ Sbjct: 62 PGYQREGSEARTGVCGFWRTGCHRLKFLCESVYELQHQLKQRGSDLVIRFGSIEKVTLSI 121 Query: 94 LDSYC-LQQRVTKLFYNRQYEINEVRRDKLLEKRLQH---RVICKSFDDSVLLPPGSILN 149 + + +V ++ N++Y E+ + +++ L+ V F L+ P + Sbjct: 122 IQALQDTDVKVDQILINKEYASEEIETEVKIDEALKSFKISVPLLFFHTRSLVHPEDLPF 181 Query: 150 HALQMYKVYTPFR--------KALIQNLVQADLRSLPVPAIRLTGP-------------- 187 + VYTPFR + L + L+ R + +P ++ P Sbjct: 182 LPSKTPDVYTPFRKHIESLPEQKLCRPLLPCPDRLIGMPPLKEIAPQRGNSGSSYDTMKM 241 Query: 188 ----------------VTPSNIPRFFDYPFQAIDPM-FPIGEQNALHILRKFC----KEK 226 + P+ Y F + GE L + + Sbjct: 242 DNILESLMKPLLQCPDLACPAFPKLSSYNFDDRSAFPYKGGESEGLRRINDYFYTGNPAP 301 Query: 227 VYYYVEQRD-IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNEL 285 V Y + R+ + +++ SP+L+ G LSPR+ L+E + + L EL Sbjct: 302 VRSYKDTRNGLLGQSYSTKFSPFLAHGCLSPRKIILELREH--EKKFGANKDTYWVLFEL 359 Query: 286 IWREFYRHLMAFYPSVCMGKPFIPW----------------TEKIEWNKDSH-------L 322 +WR+++ + Y + + ++ N++ Sbjct: 360 LWRDYFVFITQKYGTALFKLGGFEGVLNPKAASQKIHQWKPFQNLKMNQNQQGSRAINQA 419 Query: 323 LQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLD 382 W + TG P +DA M +L G+M NR R ASFL KDL VDWRIG E+F SQLLD Sbjct: 420 ASRWLKAETGIPFLDANMAELRLTGFMSNRGRQNVASFLTKDLYVDWRIGAEFFESQLLD 479 Query: 383 GDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHA 442 D +SN G WQ+ A GND R FNP Q K +D +G ++R WLPEL VP + IH Sbjct: 480 YDPSSNYGNWQYVAGVGNDPR-ASRQFNPIKQAKDYDAKGEYVRCWLPELAKVPQKSIHN 538 Query: 443 PH---------SWLDKNDLSLNYP-LPIVDHKKACHH 469 P S + YP P+++ + H Sbjct: 539 PWLLTSKQWEESVGENQRRPEGYPHRPMLEQQAWKKH 575 >gi|288575582|ref|ZP_05977252.2| deoxyribodipyrimidine photolyase [Neisseria mucosa ATCC 25996] gi|288567636|gb|EFC89196.1| deoxyribodipyrimidine photolyase [Neisseria mucosa ATCC 25996] Length = 481 Score = 271 bits (692), Expect = 3e-70, Method: Composition-based stats. Identities = 132/464 (28%), Positives = 203/464 (43%), Gaps = 36/464 (7%) Query: 1 MKATTAMSVH-LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSH 59 + AM H LVW R +LRI DN AL AA V V++A + + RQ Sbjct: 49 LSDDIAMQAHTLVWFRRNLRIRDNAALSAAVKRG-LPVAGVWVAKGSSEIR---NPRQDW 104 Query: 60 FIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRR 119 F Y + + SL+ +G+ + +E L ++ + V + + Y +E+ + Sbjct: 105 FHYQAAAALHGSLAARGVALY------AVNRVEELPAFAARLNVQTVIADEAYTSSEIGQ 158 Query: 120 DKLLEKRLQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLP 178 D + + L + + + +D + I+ Y + +++A + Q Sbjct: 159 DNRIWRILDEKGVAFERVNDRAVFAKADIMGSHGAPYTDFPHYKEAWLALFRQRFGGQDA 218 Query: 179 VPAIRLTGPVTPSNIPRFFDY-PFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIP 237 T + +P F + Q I GE A R+F +E + +Y +D P Sbjct: 219 DCRQTEIFQTTSAEMPPFPAWNGQQNIVSAQRGGEDEADKQWRQF-EENIGFYPIMKDFP 277 Query: 238 AIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAF 297 A +GTS+LS YLS G +SPR GA +WL+ LI R+FY+ L Sbjct: 278 ARKGTSRLSAYLSAGCISPRVLAVEA----------AGQGADAWLDNLIRRDFYQQLAYH 327 Query: 298 YPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMIT 357 + P T+ + L + W+QG TGFP+IDAAMR L + GW+H LR +T Sbjct: 328 RARIE------PETDALSTTFSDDLTERWRQGETGFPLIDAAMRSLKSSGWLHPALRSLT 381 Query: 358 ASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKR 417 A FL L G +F +Q D D A N G WQ AA R + +R Sbjct: 382 AEFLCGILHQPSEPGIAWFAAQQTDFDPALNEGNWQTAARNA-----RRRSIDIIQTARR 436 Query: 418 FDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIV 461 DP GTF+R +PEL ++P +H P + D + YP P++ Sbjct: 437 LDPDGTFVRRHIPELAHLPANLVHTPWLASSEID-AHGYPSPVI 479 >gi|326404724|ref|YP_004284806.1| deoxyribodipyrimidine photo-lyase [Acidiphilium multivorum AIU301] gi|325051586|dbj|BAJ81924.1| deoxyribodipyrimidine photo-lyase [Acidiphilium multivorum AIU301] Length = 539 Score = 270 bits (691), Expect = 3e-70, Method: Composition-based stats. Identities = 103/467 (22%), Positives = 173/467 (37%), Gaps = 21/467 (4%) Query: 6 AMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASL 65 V +VW + DLR+ D+ ++ V+ + I PE WR +S RQ F+ + Sbjct: 2 GTGVSVVWFKRDLRLADHA--ALTAASAAGTVLPLVIVEPEYWRLPDVSHRQYAFLAGCI 59 Query: 66 LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYE-INEVRRDKLLE 124 + +++ G +IE L++ + L+ + + RD+ + Sbjct: 60 EDLAAAIAAAGGRLLV----CVGPAIEVLEALRRRLGGFALWSHEETGNRWTHARDRAVR 115 Query: 125 KRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL 184 + + + + + + G L+ + +LP Sbjct: 116 RWARAQGVAWTELRQFGVIRGPALDRDRWAAHWDRMMAAPWLPQPRGIAWAALPEGLAAG 175 Query: 185 TGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIP--AIQGT 242 P + + G AL L F + Y P Sbjct: 176 GVPAAAALGIAP-----DGLRHGQAPGRAAALETLGSFLASRGEDYTRAMSSPVSGEAAC 230 Query: 243 SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGA--FSWLNELIWREFYRHLMAFYPS 300 S+LSPYL+ G +S R+ ++ + GA S++ L W + + P Sbjct: 231 SRLSPYLAYGCVSIREAAQAAWRRQREVPAASRWGAALRSFIARLHWHCHFIQKLEAEPE 290 Query: 301 VCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASF 360 +PF E + D L AW +G TG+P IDAAMR L GW++ R+R + SF Sbjct: 291 -AEWRPFARIYEGMRPPADPARLAAWAEGRTGYPFIDAAMRYLAAHGWINFRMRAMLMSF 349 Query: 361 LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDP 420 DL + W+ D + + Q +G + R+++P QG DP Sbjct: 350 ASHDLFLPWQESGLVLARLFTDYEPGIHWPQCQMQ--SGETGINTVRVYSPVKQGFDQDP 407 Query: 421 QGTFIRHWLPELNNVPTQYIHAPHSW--LDKNDLSLNYPLPIVDHKK 465 G FIR +PEL V +H P ++ L YP IV H++ Sbjct: 408 AGRFIRLHVPELAAVAGALVHEPWRLDAAERARLCPEYPARIVIHEE 454 >gi|79313247|ref|NP_001030703.1| UVR3 (UV REPAIR DEFECTIVE 3); DNA (6-4) photolyase [Arabidopsis thaliana] gi|332642183|gb|AEE75704.1| (6-4)DNA photolyase [Arabidopsis thaliana] Length = 445 Score = 270 bits (691), Expect = 3e-70, Method: Composition-based stats. Identities = 107/426 (25%), Positives = 168/426 (39%), Gaps = 34/426 (7%) Query: 5 TAMSV---HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHG--------- 52 T+M+ L+W R LR+ DN AL A S+ + VF+ P Sbjct: 18 TSMATGSGSLIWFRKGLRVHDNPALEYASKGSE-FMYPVFVIDPHYMESDPSAFSPGSSR 76 Query: 53 ISARQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQY 112 + F+ SL + SL + G + + + L + +V +L + Sbjct: 77 AGVNRIRFLLESLKDLDSSLKKLGSRLLVFKGEPGEVLVRCL----QEWKVKRLCFEYDT 132 Query: 113 EINEVRRDKLLEKRLQH-RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQ 171 + D ++ V S L P I+ + + Sbjct: 133 DPYYQALDVKVKDYASSTGVEVFSPVSHTLFNPAHIIEKNGGKPPLSYQSFLKVAGEPSC 192 Query: 172 ADLRSLP----VPAIRLTGPVTPSNIPRFFDYPFQAIDPM----FPIGEQNALHILRKFC 223 A + +P I G + S +P + ++ + F GE AL L K Sbjct: 193 AKSELVMSYSSLPPIGDIGNLGISEVPSLEELGYKDDEQADWTPFRGGESEALKRLTKSI 252 Query: 224 KEKVY--YYVEQRDIPAI---QGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGA 278 +K + + + + P+ T+ +SPYL G LS R + L+ + D+ K S Sbjct: 253 SDKAWVANFEKPKGDPSAFLKPATTVMSPYLKFGCLSSRYFYQCLQNIYKDVK-KHTSPP 311 Query: 279 FSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDA 338 S L +L+WREF+ P+ K ++I WN+D +L AW+ G TG+P IDA Sbjct: 312 VSLLGQLLWREFFYTTAFGTPNFDKMKGNR-ICKQIPWNEDHAMLAAWRDGKTGYPWIDA 370 Query: 339 AMRQLNTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAAS 397 M QL GWMH+ R A FL + DL + W G + F L+D D A NNG W W + Sbjct: 371 IMVQLLKWGWMHHLARHCVACFLTRGDLFIHWEQGRDVFERLLIDSDWAINNGNWMWLSC 430 Query: 398 TGNDSV 403 + Sbjct: 431 SSFFYQ 436 >gi|302332401|gb|ADL22594.1| deoxyribodipyrimidine photolyase [Staphylococcus aureus subsp. aureus JKD6159] Length = 457 Score = 270 bits (690), Expect = 4e-70, Method: Composition-based stats. Identities = 137/479 (28%), Positives = 227/479 (47%), Gaps = 31/479 (6%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M+V ++ L R+ N + FI T E S ++ F +L Sbjct: 1 MAVAVL-LNRMFRMEHNPLFEYIYQQKEDIDACYFIITEED--MSSASDLKAQFYRGTLQ 57 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 + +SL + + + S + + S+C + ++++ + ++ +R Sbjct: 58 RFYQSL-------HAEKLTPYVMSYDDIISFCKENNISEVVIAGDIMSYHLEEYDIIHQR 110 Query: 127 L---QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIR 183 + R+ + +N + YKV+T F K L D+ + + Sbjct: 111 SLFNEARIAVTLIRGNHYFKASKTMNQQGEPYKVFTSFYKKWRPYLRHRDIYHYDLKSFE 170 Query: 184 LTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS 243 +P ++ F D F + I EQN + F + + Y RD + TS Sbjct: 171 DFVIASPDDLV-FDDIAFGSS----QIIEQN---KWQHFLDQDIQNYESGRDYLSEVLTS 222 Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCM 303 QLS L+ G+L + +N L + + ++ +++ ELI+REFY LM YP Sbjct: 223 QLSVALAYGLLDIIEIFNDLLARY----DEDEANYEAFIRELIFREFYYVLMTQYPETSY 278 Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363 + F P +I+W+++ AW +G TGFPIIDAA+ +L G+MHNR+RM+ + FL K Sbjct: 279 -QAFKPKYRQIKWSQNEADFNAWCEGQTGFPIIDAAIMELTQTGFMHNRMRMVVSQFLTK 337 Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423 DL +DW GE++F L+D D ASN GWQW+ASTG D+VPYFR+FNP Q +RFD + Sbjct: 338 DLFIDWTWGEKFFRKHLIDYDAASNIHGWQWSASTGTDAVPYFRMFNPIRQSERFDAKAL 397 Query: 424 FIRHWLPELNNVPTQYIH-----APHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477 +I+ +LP N + +Y+H + + +L L+YP +VDH++ L + A Sbjct: 398 YIKTYLPIFNQIDAKYLHDTQRNESNLFEQGIELGLHYPRQMVDHQEKRTQVLATFKAL 456 >gi|148905938|gb|ABR16130.1| unknown [Picea sitchensis] Length = 431 Score = 270 bits (690), Expect = 4e-70, Method: Composition-based stats. Identities = 111/386 (28%), Positives = 165/386 (42%), Gaps = 23/386 (5%) Query: 115 NEVRRDKLLEK-RLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQAD 173 + +RD +++ L+ V + + P I+ + LI Sbjct: 7 HAQKRDGFVKEFALKLGVDVFTPISHTIFSPEEIIKKNGGKPPLTYQSFIKLIGLPPLPL 66 Query: 174 LRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPM----FPIGEQNALHILRKFCKEKVY- 228 P IP D F + F GE AL + +++ + Sbjct: 67 GNGSPSIPPVGIDNSNDLPIPTLTDLGFGDVSQEECNPFIGGETEALKRMDASIQDQKWV 126 Query: 229 -YYVEQRDIPAI---QGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNE 284 + + + P T+ LSPYL G LS R + RL+E + + K S + Sbjct: 127 AAFEKPKGDPTAFLKPATTVLSPYLKFGCLSSRLFYQRLQEVYRKVK-KHTEPPVSLEGQ 185 Query: 285 LIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLN 344 L+WREF+ + P + P ++I WN D LL AW+ G TG+P IDA M QL Sbjct: 186 LLWREFFYTVAYGTPKFDQMEG-NPICKQIPWNDDDSLLSAWRDGQTGYPWIDAVMVQLR 244 Query: 345 TIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSV 403 GWMH+ R A FL + DL V W G + F L+D D A NN W W S Sbjct: 245 KWGWMHHLARHAVACFLTRGDLFVHWEKGRDVFDRLLIDSDWAINNSNWMW-LSCSAFFS 303 Query: 404 PYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWL------DKNDLSLNYP 457 Y RI++P GK++DP G ++R++LP L ++P +YI+ P + K + +YP Sbjct: 304 QYHRIYSPISFGKKYDPDGKYVRYFLPVLKDMPKEYIYEPWTAPIDVQRKAKCIIGKDYP 363 Query: 458 LPIVDH---KKACHHTLNQYYAAKKQ 480 P+V H K C + YA KQ Sbjct: 364 EPLVSHLGASKNCKEKIAAAYALNKQ 389 >gi|88704316|ref|ZP_01102030.1| Deoxyribodipyrimidine photolyase [Congregibacter litoralis KT71] gi|88701367|gb|EAQ98472.1| Deoxyribodipyrimidine photolyase [Congregibacter litoralis KT71] Length = 434 Score = 270 bits (690), Expect = 4e-70, Method: Composition-based stats. Identities = 112/433 (25%), Positives = 177/433 (40%), Gaps = 23/433 (5%) Query: 10 HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69 + W RNDLR+ DN L A + ++ ++ G+ ++ FI SL +Q Sbjct: 3 AIYWFRNDLRLHDNPGLVEAAKADELLLLYLWPLQRAWCNTQGLGEQRERFITESLKALQ 62 Query: 70 KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH 129 L G Q S + V + ++ E R ++L +RL Sbjct: 63 DDLQPLGQSLLVLQGSPEL----VIPDLVRDYGVDAVHASQCAGSYETRAVRVLRERL-- 116 Query: 130 RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189 + + L I ++ + ++PFR+ + +NL P+ R + Sbjct: 117 HIPVTEHAGNTLFRRSDIKALCPELPRSFSPFRRKVEKNLE-------PLKPSRDLPQLP 169 Query: 190 PSNIPRFFDYPFQAIDPM----FPIGEQNALHILRKFCK-EKVYYYVEQRD-IPAIQGTS 243 P F P A+ P G L++F + Y E R+ + ++G+S Sbjct: 170 PPPAVTFHRIPDAAVKPPVGLPLRGGSSAGQRRLKQFLHSGAIRSYKETRNCLDPLEGSS 229 Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCM 303 LSP+L++G LS R+ + E + + + EL+WRE++ H A V + Sbjct: 230 TLSPWLALGSLSAREVAAAVHEH--EAQEGANESTYWLVFELLWREYFFHR-ALQDGVSL 286 Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363 + + + W G T P+++A M QL GWM NR R I AS L+ Sbjct: 287 FRHGGREGKVSRCTFEPRNFARWCAGDTNHPLVNALMHQLVATGWMSNRGRQIAASCLIH 346 Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423 D +DWR G +F L+D D+ SN G WQ+ A G D R FN Q ++DP G Sbjct: 347 DFGIDWRYGAAFFEKHLIDYDVGSNYGNWQYIAGVGADPRG-GRAFNIEKQTAQYDPDGV 405 Query: 424 FIRHWLPELNNVP 436 FI W E P Sbjct: 406 FIAKWDGERAAQP 418 >gi|169617021|ref|XP_001801925.1| hypothetical protein SNOG_11687 [Phaeosphaeria nodorum SN15] gi|160703316|gb|EAT80731.2| hypothetical protein SNOG_11687 [Phaeosphaeria nodorum SN15] Length = 1229 Score = 269 bits (689), Expect = 5e-70, Method: Composition-based stats. Identities = 106/545 (19%), Positives = 186/545 (34%), Gaps = 84/545 (15%) Query: 17 DLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQKSLSQKG 76 DLR+ D+ AL AA + ++ P + + + + ++ + +S+++ Sbjct: 580 DLRLHDSPALKAALDLKPECLYPIWTWDPHYVYRARVGSNRWQYLIDCQNDLSQSITKLN 639 Query: 77 --IVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHRVICK 134 + + ++T L + + + RD+ + + + + Sbjct: 640 PKSKLFLIR----EAPQTLFPKLFKAWKITHLVFEKDTDAYARERDEKVMEIAKEAGVEV 695 Query: 135 SFD-DSVLLPPGSILN-HALQMYKVYTPFRKALIQNLVQADLRSLPVPAIR--------- 183 L P ++ + + T + A + P Sbjct: 696 VIKVGRTLYDPDELVKENNGKPTMSITQVQNAGKKIGAIPRPIPAPKTLPDPGKTDFNFD 755 Query: 184 ------------------------LTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHIL 219 L GP +P + + GE AL L Sbjct: 756 QEKPAQDPDINAVQRDGDEASYSTLAGPNGDFAVPTMQELGLKEATTQHRGGETLALKTL 815 Query: 220 RKFC--KEKVYYYVEQRDIP---AIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKP 274 + E + + + P + Q T+ LSP+L G LS R+ + R+++ K Sbjct: 816 DETIANSEYTATFEKPKTAPTAFSPQSTTLLSPHLHFGSLSVREFYWRVQDIVTSFKGKA 875 Query: 275 KSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNK---------------- 318 S +L++R+ Y A P I W+ Sbjct: 876 SQPPASLTGQLLFRDMYFGAQAALGYSFGQTYNNPACRFIPWHLPSAIDPATNLITGKYL 935 Query: 319 -----DSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK-DLLVDWRIG 372 Q WK G TGFP IDA MRQL GW+H+ R A FL + +DW G Sbjct: 936 VDSALAESHFQRWKHGRTGFPWIDALMRQLAREGWIHHLGRHAVACFLTRGGCYIDWERG 995 Query: 373 EEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPEL 432 E F L+D + A N G WQW S +FR ++P ++D G F+R ++PEL Sbjct: 996 AEVFEEFLIDHESACNIGNWQW-LSCTAFFAQFFRCYSPVAFPAKWDKNGDFVRRYVPEL 1054 Query: 433 NNVPTQYIHAPH--------SWLDKNDLSLN-------YPLPIVDHKKACHHTLNQYYAA 477 + ++I+ P W + S++ YP P++D + + A Sbjct: 1055 AHFDKKFIYEPWKAPIADQKKWGCRIVESVDGYVQEGEYPKPMLDFNERRDTCIQAMKNA 1114 Query: 478 KKQSL 482 + L Sbjct: 1115 YRVGL 1119 >gi|153214304|ref|ZP_01949321.1| RNA-binding cryptochrome Cry1 [Vibrio cholerae 1587] gi|124115452|gb|EAY34272.1| RNA-binding cryptochrome Cry1 [Vibrio cholerae 1587] Length = 462 Score = 269 bits (688), Expect = 6e-70, Method: Composition-based stats. Identities = 112/432 (25%), Positives = 182/432 (42%), Gaps = 22/432 (5%) Query: 6 AMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFI---ATP---EQWRQHGISARQSH 59 + + L W NDLR+ DN L A D ++I ++ TP +Q + Sbjct: 2 SKKIGLYWFTNDLRVNDNPLLEQASQQVD-RLICLYCYPSITPFLARYAQQTQWGEAKKR 60 Query: 60 FIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRR 119 F+ +L + SLS G + + L Q +T ++ + +E + Sbjct: 61 FLNQTLADLDHSLSTLGQKLWVTPLLPY----QALRHLLTQVEITDIYVDAMAGSDERQA 116 Query: 120 DKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPV 179 + + I + S+L P + + +T FR + + L S P+ Sbjct: 117 IARIHQDFSSVHIHQQALHSLLSEP-QLPFALEALPSTFTQFR----KQVETLSLSSAPI 171 Query: 180 PAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNAL-HILRKFCKEKVYYYVEQRD-IP 237 R+ P+ D + F GEQ L H F Y E R+ + Sbjct: 172 GYPRVLPPIEQGWQLPLMDIVTEPNHSAFVGGEQAGLTHCQNYFSSMLPSRYKETRNGLD 231 Query: 238 AIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAF 297 + +++ SP+L++G +SP+ + L+ + + + EL+WRE++ Sbjct: 232 GMDYSTKFSPWLALGAVSPKTIYAMLQRY--EAVHGANDSTYWIFFELLWREYFYWYARR 289 Query: 298 YPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMIT 357 Y + I + + + + WK G T FPI++A MRQLN G+M NR R + Sbjct: 290 YGAKLFRFSGIGEKKPLT-SFYAQRFLQWKHGETPFPIVNACMRQLNQTGYMSNRGRQLV 348 Query: 358 ASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKR 417 AS LV +L +DWR G YF +QL+D D+ SN G WQ+ A G D R FN Q Sbjct: 349 ASCLVHELGLDWRYGAAYFETQLMDYDVGSNWGNWQYLAGVGADPRG-SRQFNLEKQAHT 407 Query: 418 FDPQGTFIRHWL 429 +DP+G F+ W Sbjct: 408 YDPKGEFVAKWC 419 >gi|320104815|ref|YP_004180406.1| DNA photolyase FAD-binding protein [Isosphaera pallida ATCC 43644] gi|319752097|gb|ADV63857.1| DNA photolyase FAD-binding protein [Isosphaera pallida ATCC 43644] Length = 559 Score = 269 bits (688), Expect = 7e-70, Method: Composition-based stats. Identities = 104/481 (21%), Positives = 200/481 (41%), Gaps = 26/481 (5%) Query: 10 HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69 + W++ D+R+ DN+AL A + V+ VF+ P Q SA +L +++ Sbjct: 20 AVWWIKRDMRLADNEALTRAVAEH-SLVLPVFLHEPTLLAQAETSAMHWDAWTQALAELR 78 Query: 70 KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEIN-EVRRDKLLEKRLQ 128 + + + G + +++E ++ T ++ + + +RD+ + + Sbjct: 79 RRVRRAGAEILVG----WGEAVESFEAIRAVFPFTHIYAHEEIGGAFTFQRDRAVRAWCR 134 Query: 129 HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPA-IRLTGP 187 R + P S+ + ++ +R ++ ++ ++P+ + +R Sbjct: 135 RRGVTVIE-----RPQSSVQRGGVDRDRMGELWRSRIVAPPALPEVAAIPLTSELRTWAA 189 Query: 188 VTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIP--AIQGTSQL 245 TP+ P+ ++ + E +A L F +++ Y P A + S+L Sbjct: 190 TTPTAPPQAEVIGWRRPSEWQNVNESSAWATLDSFLEQRGRGYSGGISSPNTAFESGSRL 249 Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDL--------LIKPKSGAFSWLNELIWREFYRHLMAF 297 S +L+ G LS RQ + + +L + + S+L L WR+ + + Sbjct: 250 SVHLAWGTLSLRQAYQATQARLRELERDPAAHDATRWRRSLRSFLARLHWRDHFIQRLET 309 Query: 298 YPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMIT 357 P + +P P + +E D LL+ W++G TGFP++DA MR L T G+ + R+R + Sbjct: 310 EPEMEF-RPLHPAYDALEAEDDPELLERWRRGLTGFPLVDAVMRCLATTGFCNFRMRAMA 368 Query: 358 ASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKR 417 S L +DWR + D + + Q A + R +NP Q Sbjct: 369 VSVACHALRLDWRTIHPHLAGVFRDYEPGIHFSQLQMQAGVV--GINTIRSYNPFKQALD 426 Query: 418 FDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477 DP FI W+PEL ++P + IH+ YP P+VDH+ + + Y Sbjct: 427 HDPDARFITRWIPELRDLPAERIHS-FDQDPPRSSETTYPPPVVDHRTRTRAWVERLYQL 485 Query: 478 K 478 + Sbjct: 486 R 486 >gi|153800458|ref|ZP_01955044.1| RNA-binding cryptochrome Cry1 [Vibrio cholerae MZO-3] gi|124124084|gb|EAY42827.1| RNA-binding cryptochrome Cry1 [Vibrio cholerae MZO-3] Length = 462 Score = 269 bits (687), Expect = 9e-70, Method: Composition-based stats. Identities = 113/432 (26%), Positives = 182/432 (42%), Gaps = 22/432 (5%) Query: 6 AMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFI---ATP---EQWRQHGISARQSH 59 + + L W NDLR+ DN L A D ++I ++ TP +Q + Sbjct: 2 SKKIGLYWFTNDLRVNDNPLLEQASQQVD-RLICLYCYPSITPFLARYAQQTQWGEAKKR 60 Query: 60 FIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRR 119 F+ +L + SLS G + + L Q VT ++ + +E + Sbjct: 61 FLNQTLADLDHSLSTLGQKLWVTPLLPY----QALRHLLTQVEVTDIYVDAMAGSDERQS 116 Query: 120 DKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPV 179 + + I + S+L P + + +T FR + + L S P+ Sbjct: 117 IAHIHQDFSSVHIHQQALHSLLSEP-QLPFALEALPSTFTQFR----KQVETLSLSSAPI 171 Query: 180 PAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNAL-HILRKFCKEKVYYYVEQRD-IP 237 R+ P+ D + F GEQ L H F Y E R+ + Sbjct: 172 GYPRVLPPIEQGWQLPLMDIVTEPNHSAFVGGEQAGLTHCQHYFSSMLPSRYKETRNGLD 231 Query: 238 AIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAF 297 + +++ SP+L++G +SP+ + L+ + + + EL+WRE++ Sbjct: 232 GMDYSTKFSPWLALGAVSPKTIYAMLQRY--EAVHGANDSTYWIFFELLWREYFYWYARR 289 Query: 298 YPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMIT 357 Y + I + + + + WK G T FPI++A MRQLN G+M NR R + Sbjct: 290 YGAKLFRFSGIGEKKPLT-SFYAQRFLQWKHGETPFPIVNACMRQLNQTGYMSNRGRQLV 348 Query: 358 ASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKR 417 AS LV +L +DWR G YF +QL+D D+ SN G WQ+ A G D R FN Q Sbjct: 349 ASCLVHELGLDWRYGAAYFETQLMDYDVGSNWGNWQYLAGVGADPRG-SRQFNLAKQAHT 407 Query: 418 FDPQGTFIRHWL 429 +DP+G F+ W Sbjct: 408 YDPKGEFVAKWC 419 >gi|229515760|ref|ZP_04405219.1| deoxyribodipyrimidine photolyase/cryptochrome family protein [Vibrio cholerae TMA 21] gi|229347529|gb|EEO12489.1| deoxyribodipyrimidine photolyase/cryptochrome family protein [Vibrio cholerae TMA 21] Length = 504 Score = 269 bits (687), Expect = 9e-70, Method: Composition-based stats. Identities = 108/484 (22%), Positives = 189/484 (39%), Gaps = 30/484 (6%) Query: 8 SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67 ++LVWL+ DLR+TD+ L AA S + +++ P S R F++ SL Sbjct: 3 KINLVWLKRDLRLTDHAPLQAAL-TSGRPTLLLYLFEPMLLGDAHYSERHWRFVWQSLQA 61 Query: 68 VQKSLSQ-KGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEIN-EVRRDKLLEK 125 + + L+Q KG V D + + ++ +++ + +RD L + Sbjct: 62 INRDLAQSKGEVLIV-----TSDWQTCFARIAERYAIEAIYSHQEVGLACTFQRDLALAQ 116 Query: 126 RLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185 Q I P +++ A +++ + DL + Sbjct: 117 WCQQHDIVWHE-----FPYAAVIRGAQTRKNWDEHWQQVMRSPCCDPDLTRANWLKLDAA 171 Query: 186 GPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIP--AIQGTS 243 S+IP + M G A L F + Y P A S Sbjct: 172 ALGLRSDIPATW---QSKQAGMQTGGSDMAWATLEDFFARRGREYYRSISSPSLARHACS 228 Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCM 303 ++SPYL+ G +S R+ + L + + + A S + L W + + Sbjct: 229 RMSPYLAWGNISLREMYQTLLKHWSVAGFRRSLIALS--SRLHWHCHFIQKFESECEMEF 286 Query: 304 GKPFIPWTEKIEWNKD--SHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFL 361 + ++ + D + L AW+ G+TG P++DA MR L G+++ R+R + S L Sbjct: 287 RCVNRAYDSLLQQSSDVPAAQLAAWQTGHTGIPLVDACMRCLIQTGYLNFRMRAMLVSVL 346 Query: 362 VKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQ 421 + VDWR G Y LD + + +Q G RI+NPT Q + D + Sbjct: 347 THHMNVDWRAGVTYLAQLFLDFEPGIHYPQFQMQ--AGVTGTNTIRIYNPTKQAQEHDSE 404 Query: 422 GTFIRHWLPELNNVPTQYIHAPH------SWLDKNDLSLNYPLPIVDHKKACHHTLNQYY 475 G FI W+PEL VP + P + + + L Y P++D + + ++ + Sbjct: 405 GQFIHKWVPELAQVPVPLLFEPWLMTPLEAQMYQVPLESPYLKPVMDLEASAKQARDRLW 464 Query: 476 AAKK 479 +K Sbjct: 465 QWQK 468 >gi|21282382|ref|NP_645470.1| hypothetical protein MW0653 [Staphylococcus aureus subsp. aureus MW2] gi|300912677|ref|ZP_07130120.1| deoxyribodipyrimidine photo-lyase [Staphylococcus aureus subsp. aureus TCH70] gi|21203819|dbj|BAB94518.1| MW0653 [Staphylococcus aureus subsp. aureus MW2] gi|300886923|gb|EFK82125.1| deoxyribodipyrimidine photo-lyase [Staphylococcus aureus subsp. aureus TCH70] Length = 457 Score = 269 bits (687), Expect = 9e-70, Method: Composition-based stats. Identities = 137/479 (28%), Positives = 229/479 (47%), Gaps = 31/479 (6%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M++ ++ L R+ N L+ + + A + PE+ S ++ F +L Sbjct: 1 MAIAVL-LNRMFRMEHNP-LFEYIYQQKEDIDACYFIIPEE-DMSSASDLKAQFYRGTLQ 57 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 + +SL + + + S + + S+C + ++++ + +L +R Sbjct: 58 RFYQSL-------HAEKLTPYVMSYDDIISFCKENNISEVVTAGDIMSYHLEEYDILHQR 110 Query: 127 L---QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIR 183 + R+ + +N + YKV+T F K L D+ + + Sbjct: 111 SLFNEARIAVTLIRGNHYFKASKTMNQQGEPYKVFTSFYKKWRPYLRHRDVYHYDLKSFE 170 Query: 184 LTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS 243 +P ++ F D F + I EQN + F + + Y RD TS Sbjct: 171 DFVIASPDDLV-FDDIAFGSS----QIIEQN---KWQHFLDQDIQNYESGRDYLPEVLTS 222 Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCM 303 QLS L+ G+L + +N L + + ++ +++ ELI+REFY LM YP Sbjct: 223 QLSVALAYGLLDIIEIFNDLLARY----DEDEANYEAFIRELIFREFYYVLMTQYPETSY 278 Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363 + F P +I+W+++ AW +G TGFPIIDAA+ +L G+MHNR+RM+ + FL K Sbjct: 279 -QAFKPKYRQIKWSQNEADFNAWCEGQTGFPIIDAAIMELTQTGFMHNRMRMVVSQFLTK 337 Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423 DL +DW GE++F L+D D ASN GWQW+ASTG D+VPYFR+FNP Q +RFD + Sbjct: 338 DLFIDWTWGEKFFRKHLIDYDAASNIHGWQWSASTGTDAVPYFRMFNPIRQSERFDAKAL 397 Query: 424 FIRHWLPELNNVPTQYIH-----APHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477 +I+ +LP N + +Y+H + + +L +YP IVDH++ L + A Sbjct: 398 YIKTYLPIFNQIDAKYLHDTQRNESNLFEQGIELGSHYPRQIVDHQEKRTQVLATFKAL 456 >gi|91217386|ref|ZP_01254346.1| deoxyribodipyrimidine photolyase [Psychroflexus torquis ATCC 700755] gi|91184494|gb|EAS70877.1| deoxyribodipyrimidine photolyase [Psychroflexus torquis ATCC 700755] Length = 436 Score = 269 bits (687), Expect = 1e-69, Method: Composition-based stats. Identities = 104/441 (23%), Positives = 184/441 (41%), Gaps = 26/441 (5%) Query: 4 TTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGIS-----ARQS 58 + +VW RNDLR D K+L+ AC + +A V+ V+ P + ++ Sbjct: 2 QKKQKITIVWFRNDLRTRDQKSLFDACQSENA-VLGVYCFDPSHFETTRYGFKKTEKYRA 60 Query: 59 HFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVR 118 F+ S+ Q+ +L I E + +T +FY ++ E R Sbjct: 61 KFLIESVEQLSDNLQDLNISLHIAH----KHPSEVFKELSERYAITSVFYQTEWTREEKR 116 Query: 119 RDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQ-MYKVYTPFRKALIQNLVQADLRSL 177 + ++ L + +++ D L P + + Q + +VYT FRK + Sbjct: 117 VEAKVKSALPNADFIENY-DQFLFHPEDLPYESFQDIPEVYTNFRKKCEKQSEVRQKVPA 175 Query: 178 PVPAIRLTGPVTPSNIPRFFDYPFQAIDPM------FPIGEQNALHILRKFCKE--KVYY 229 P P + P D + + F GE A + + + K+ Y Sbjct: 176 PQPRPTHHLLEERNQAPNLSDLGLENFETDPRSAFPFKGGENEAWKRIEHYFWDTKKLQY 235 Query: 230 YVEQRD-IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWR 288 Y + R+ + +S+ S +L+ G +S ++ ++ + +K + + ELIWR Sbjct: 236 YKKTRNGLLGTDYSSKFSAWLANGSISAVSIYHEVRA--FEKQVKKNQDTYWLIFELIWR 293 Query: 289 EFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGW 348 ++++++ + + + +W + L+ W G T ++A M ++ G+ Sbjct: 294 DYFKYISLKHGNKIFQIGG-VLNKDYDWGNNKKALRDWINGNTPEDFVNANMIEIKETGF 352 Query: 349 MHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRI 408 M NR R S+ K+ DWRIG YF S L+D D+ SN G W + + GND P R Sbjct: 353 MSNRGRQNVNSYWAKEWKQDWRIGAAYFESMLVDYDVHSNWGNWMYNSGVGND--PRDRK 410 Query: 409 FNPTIQGKRFDPQGTFIRHWL 429 FN Q R+D G + R WL Sbjct: 411 FNIKNQADRYDSGGKYQRTWL 431 >gi|254225326|ref|ZP_04918938.1| cryptochrome Cry2 [Vibrio cholerae V51] gi|125622167|gb|EAZ50489.1| cryptochrome Cry2 [Vibrio cholerae V51] Length = 504 Score = 269 bits (687), Expect = 1e-69, Method: Composition-based stats. Identities = 108/484 (22%), Positives = 189/484 (39%), Gaps = 30/484 (6%) Query: 8 SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67 ++LVWL+ DLR+TD+ L AA S + +++ P S R F++ SL Sbjct: 3 KINLVWLKRDLRLTDHAPLQAAL-TSGRPTLLLYLFEPMLLGDAHYSERHWRFVWQSLQA 61 Query: 68 VQKSLSQ-KGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEIN-EVRRDKLLEK 125 + + L+Q KG V D + + ++ +++ + +RD L + Sbjct: 62 INRDLAQSKGEVLIV-----TSDWQTCFSRLAERYAIEAIYSHQEVGLACTFQRDLALAQ 116 Query: 126 RLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185 Q I P +++ A +++ + DL + Sbjct: 117 WCQQHDIVWHE-----FPYAAVIRGAQTRKNWDEHWQQVMRSPCCDPDLTRANWLKLDAA 171 Query: 186 GPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIP--AIQGTS 243 S+IP + M G A L F + Y P A S Sbjct: 172 ALGLRSDIPATW---QSKQAGMQTGGSDMAWATLEDFFVRRGREYYRSISSPSLARHACS 228 Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCM 303 ++SPYL+ G +S R+ + L + + + A S + L W + + Sbjct: 229 RMSPYLAWGNISLREMYQTLLKHWSVAGFRRSLIALS--SRLHWHCHFIQKFESECEMEF 286 Query: 304 GKPFIPWTEKIEWNKD--SHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFL 361 + ++ + D + L AW+ G+TG P++DA MR L G+++ R+R + S L Sbjct: 287 RCVNRAYDSLLQQSSDVPAAQLAAWQTGHTGIPLVDACMRCLIQTGYLNFRMRAMLVSVL 346 Query: 362 VKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQ 421 + VDWR G Y LD + + +Q G RI+NPT Q + D + Sbjct: 347 THHMNVDWRAGVTYLAQLFLDFEPGIHYPQFQMQ--AGVTGTNTIRIYNPTKQAQEHDSE 404 Query: 422 GTFIRHWLPELNNVPTQYIHAPH------SWLDKNDLSLNYPLPIVDHKKACHHTLNQYY 475 G FI W+PEL VP + P + + + L Y P++D + + ++ + Sbjct: 405 GQFIHKWVPELAQVPVPLLFEPWLMTPLEAQMYQVPLESPYLKPVMDLEASAKQARDRLW 464 Query: 476 AAKK 479 +K Sbjct: 465 QWQK 468 >gi|229515204|ref|ZP_04404664.1| deoxyribodipyrimidine photolyase single-strand-specific [Vibrio cholerae TMA 21] gi|229347909|gb|EEO12868.1| deoxyribodipyrimidine photolyase single-strand-specific [Vibrio cholerae TMA 21] Length = 462 Score = 269 bits (687), Expect = 1e-69, Method: Composition-based stats. Identities = 112/432 (25%), Positives = 182/432 (42%), Gaps = 22/432 (5%) Query: 6 AMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFI---ATP---EQWRQHGISARQSH 59 + + L W NDLR+ DN L A D ++I ++ TP +Q + Sbjct: 2 SKKIGLYWFTNDLRVNDNPLLEQASQQVD-RLICLYCYPSITPFLARYAQQTQWGEAKKR 60 Query: 60 FIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRR 119 F+ +L + SLS G + + L Q +T ++ + +E + Sbjct: 61 FLNQTLADLDHSLSTLGQKLWVTLLLPY----QALRHLLTQVEITDIYVDAMAGSDERQA 116 Query: 120 DKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPV 179 + + I + S+L P + + +T FR + + L S P+ Sbjct: 117 IARIHQDFSSVHIHQQALHSLLSEP-QLPFAIEALPSTFTQFR----KQVETLSLSSAPI 171 Query: 180 PAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNAL-HILRKFCKEKVYYYVEQRD-IP 237 R+ P+ D + F GEQ L H F Y E R+ + Sbjct: 172 GYPRVLPPIEQGWQLPLMDIVTEPNHSAFVGGEQAGLTHCQNYFSSMLPSRYKETRNGLD 231 Query: 238 AIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAF 297 + +++ SP+L++G +SP+ + L+ + + + EL+WRE++ Sbjct: 232 GMDYSTKFSPWLALGAVSPKTIYAMLQRY--EAVHGANDSTYWIFFELLWREYFYWYARR 289 Query: 298 YPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMIT 357 Y + I + + + + WK G T FPI++A MRQLN G+M NR R + Sbjct: 290 YGAKLFRFSGIGEKKPLT-SFYAQRFLQWKHGETPFPIVNACMRQLNQTGYMSNRGRQLV 348 Query: 358 ASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKR 417 AS LV +L +DWR G YF +QL+D D+ SN G WQ+ A G D R FN Q Sbjct: 349 ASCLVHELGLDWRYGAAYFETQLMDYDVGSNWGNWQYLAGVGADPRG-SRQFNLAKQAHT 407 Query: 418 FDPQGTFIRHWL 429 +DP+G F+ W Sbjct: 408 YDPKGEFVAKWC 419 >gi|72160938|ref|YP_288595.1| deoxyribodipyrimidine photo-lyase type I [Thermobifida fusca YX] gi|71914670|gb|AAZ54572.1| Deoxyribodipyrimidine photo-lyase type I [Thermobifida fusca YX] Length = 419 Score = 268 bits (686), Expect = 1e-69, Method: Composition-based stats. Identities = 106/456 (23%), Positives = 196/456 (42%), Gaps = 40/456 (8%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 MS +V DLR++D+ AL+AA +D +V+ +F+ P R + + ++ +L Sbjct: 1 MSTTVVLFTRDLRVSDHPALHAAVTEAD-RVVPLFVVDPALVRV--SARNRIAYLLEALA 57 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 +++ L ++G Q +++ + + ++ + VRR + L + Sbjct: 58 ELRGLLRERGGELVVRQGDTVAETVRIV----AEAGAQAVYLSADVSAAAVRRARQLTEA 113 Query: 127 LQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185 ++ ++F ++PPG++ Y+++TP+ A ++ + + Sbjct: 114 VRAAGAHVRTFPGVTVVPPGALRPAHGDHYQIFTPYLNAWRAAQWRSPRPAPERVRLPEG 173 Query: 186 GPVTPSNIPRFFDYPFQAIDPMF-PIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244 P + P G + A +R + + S+ Sbjct: 174 LVPGPLPGAELIRLGTGVLAPQREQGGPRTARERIRAWLAQPNQD-------------SR 220 Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304 +L G LSP + +E L+ + +F+ ++ +P + Sbjct: 221 FGCHLHFGCLSPLEVALVAREHPRGALLLRQLALR---------DFHHQVLQAFPRLPRA 271 Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364 + P I+W D AW G TG PI+DA MRQL G++ R+RM+TA++L + Sbjct: 272 -DYRP--RPIQWRDDDSAFAAWCSGRTGVPIVDAGMRQLLWEGYVPGRIRMLTATYLTQV 328 Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424 L + W+ G ++F S L+DGD+A+N G WQ A TG P RI N Q +R+DP G + Sbjct: 329 LRIHWKRGADHFYSLLVDGDVANNYGNWQQIAGTGGVPRPARRI-NLYRQAERYDPSGDY 387 Query: 425 IRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPI 460 +R ++PEL ++ +H P YP P+ Sbjct: 388 VRRFVPELRSISGSAVHHP-----PVPRPGGYPPPL 418 >gi|262190301|ref|ZP_06048568.1| deoxyribodipyrimidine photolyase/cryptochrome family protein [Vibrio cholerae CT 5369-93] gi|262033809|gb|EEY52282.1| deoxyribodipyrimidine photolyase/cryptochrome family protein [Vibrio cholerae CT 5369-93] Length = 504 Score = 268 bits (686), Expect = 1e-69, Method: Composition-based stats. Identities = 108/484 (22%), Positives = 189/484 (39%), Gaps = 30/484 (6%) Query: 8 SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67 ++LVWL+ DLR+TD+ L AA S + +++ P S R F++ SL Sbjct: 3 KINLVWLKRDLRLTDHAPLQAAL-TSGRPTLLLYLFEPMLLGDAHYSERHWRFVWQSLQA 61 Query: 68 VQKSLSQ-KGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEIN-EVRRDKLLEK 125 + + L+Q KG V D + + ++ +++ + +RD L + Sbjct: 62 INRDLAQSKGEVLIV-----TSDWQTCFARIAERYAIEAIYSHQEVGLACTFQRDLALAQ 116 Query: 126 RLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185 Q I P +++ A +++ + DL + Sbjct: 117 WCQQHDIVWHE-----FPYAAVIRGAQTRKNWDEHWQQVMRSPCCDPDLTRANWLKLDAA 171 Query: 186 GPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIP--AIQGTS 243 S+IP + M G A L F + Y P A S Sbjct: 172 ALGLRSDIPATW---QSKQAGMQTGGSDMAWATLEDFFARRGREYYRSISSPSLARHACS 228 Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCM 303 ++SPYL+ G +S R+ + L + + + A S + L W + + Sbjct: 229 RMSPYLAWGNISLREMYQTLLKHWSVAGFRRSLIALS--SRLHWHCHFIQKFESECEMEF 286 Query: 304 GKPFIPWTEKIEWNKDS--HLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFL 361 + ++ + D+ L AW+ G+TG P++DA MR L G+++ R+R + S L Sbjct: 287 RCVNRAYDSLLQQSSDAPAAQLAAWQTGHTGIPLVDACMRCLIQTGYLNFRMRAMLVSVL 346 Query: 362 VKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQ 421 + VDWR G Y LD + + +Q G RI+NPT Q + D + Sbjct: 347 THHMNVDWRAGVTYLAQLFLDFEPGIHYPQFQMQ--AGVTGTNTIRIYNPTKQAQEHDSE 404 Query: 422 GTFIRHWLPELNNVPTQYIHAPH------SWLDKNDLSLNYPLPIVDHKKACHHTLNQYY 475 G FI W+PEL VP + P + + + L Y P++D + + ++ + Sbjct: 405 GQFIHKWVPELAQVPVPLLFEPWLMTPLEAQMYQVPLESPYLKPVMDLEASAKQARDRLW 464 Query: 476 AAKK 479 +K Sbjct: 465 QWQK 468 >gi|312900797|ref|ZP_07760094.1| FAD binding domain of DNA photolyase [Enterococcus faecalis TX0470] gi|311292278|gb|EFQ70834.1| FAD binding domain of DNA photolyase [Enterococcus faecalis TX0470] Length = 267 Score = 268 bits (685), Expect = 1e-69, Method: Composition-based stats. Identities = 120/262 (45%), Positives = 153/262 (58%), Gaps = 13/262 (4%) Query: 224 KEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLN 283 +K+ Y +RD P TS LS +L G LS R W L ++ Sbjct: 2 DQKLQSYENKRDFPYQDQTSHLSTFLRTGELSIRTIWQEL------ASAPSSLSKETFKK 55 Query: 284 ELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQL 343 EL WR+FY + + +P + I+W D + W++G TG+PIIDAAMRQL Sbjct: 56 ELAWRDFYNMIYSTFPQQ-KEEAIQEKFRYIQWANDPEMFAKWQKGETGYPIIDAAMRQL 114 Query: 344 NTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSV 403 N GWMHNRLRMITASFLVK+L +DWR GE+YF L+D D A+N GGWQWAASTG D+V Sbjct: 115 NQTGWMHNRLRMITASFLVKNLHIDWRWGEKYFQKMLIDYDAANNIGGWQWAASTGTDAV 174 Query: 404 PYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND------LSLNYP 457 PYFRIFNP IQ K+FD G FI+ ++PEL VP +YIH P+ + L NYP Sbjct: 175 PYFRIFNPIIQSKKFDNDGQFIKKYVPELKQVPQKYIHQPNLMNEALQTRYHVHLGENYP 234 Query: 458 LPIVDHKKACHHTLNQYYAAKK 479 PIVD+ + TL Y +K+ Sbjct: 235 KPIVDYASSKKQTLFLYEVSKE 256 >gi|49482947|ref|YP_040171.1| DNA photolyase [Staphylococcus aureus subsp. aureus MRSA252] gi|257424810|ref|ZP_05601237.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus 55/2053] gi|257427478|ref|ZP_05603877.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus 65-1322] gi|257430109|ref|ZP_05606493.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus 68-397] gi|257432811|ref|ZP_05609171.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus E1410] gi|257435715|ref|ZP_05611763.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus M876] gi|282903318|ref|ZP_06311209.1| putative deoxyribodipyrimidine photolyase [Staphylococcus aureus subsp. aureus C160] gi|282905098|ref|ZP_06312956.1| deoxyribodipyrimidine photo-lyase [Staphylococcus aureus subsp. aureus Btn1260] gi|282908075|ref|ZP_06315906.1| deoxyribodipyrimidine photo-lyase [Staphylococcus aureus subsp. aureus WW2703/97] gi|282910335|ref|ZP_06318139.1| deoxyribodipyrimidine photo-lyase [Staphylococcus aureus subsp. aureus WBG10049] gi|282913528|ref|ZP_06321317.1| putative deoxyribodipyrimidine photolyase [Staphylococcus aureus subsp. aureus M899] gi|282923446|ref|ZP_06331126.1| DNA photolyase [Staphylococcus aureus subsp. aureus C101] gi|283957520|ref|ZP_06374973.1| putative deoxyribodipyrimidine photolyase [Staphylococcus aureus subsp. aureus A017934/97] gi|293500575|ref|ZP_06666426.1| deoxyribodipyrimidine photo-lyase [Staphylococcus aureus subsp. aureus 58-424] gi|293509521|ref|ZP_06668232.1| deoxyribodipyrimidine photo-lyase [Staphylococcus aureus subsp. aureus M809] gi|293524107|ref|ZP_06670794.1| putative deoxyribodipyrimidine photolyase [Staphylococcus aureus subsp. aureus M1015] gi|295427267|ref|ZP_06819902.1| deoxyribodipyrimidine photo-lyase [Staphylococcus aureus subsp. aureus EMRSA16] gi|297590384|ref|ZP_06949023.1| deoxyribodipyrimidine photo-lyase [Staphylococcus aureus subsp. aureus MN8] gi|49241076|emb|CAG39754.1| putative DNA photolyase [Staphylococcus aureus subsp. aureus MRSA252] gi|257272380|gb|EEV04503.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus 55/2053] gi|257275671|gb|EEV07144.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus 65-1322] gi|257279306|gb|EEV09907.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus 68-397] gi|257282226|gb|EEV12361.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus E1410] gi|257284906|gb|EEV15025.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus M876] gi|282314314|gb|EFB44704.1| DNA photolyase [Staphylococcus aureus subsp. aureus C101] gi|282322560|gb|EFB52882.1| putative deoxyribodipyrimidine photolyase [Staphylococcus aureus subsp. aureus M899] gi|282325727|gb|EFB56035.1| deoxyribodipyrimidine photo-lyase [Staphylococcus aureus subsp. aureus WBG10049] gi|282327740|gb|EFB58022.1| deoxyribodipyrimidine photo-lyase [Staphylococcus aureus subsp. aureus WW2703/97] gi|282331923|gb|EFB61434.1| deoxyribodipyrimidine photo-lyase [Staphylococcus aureus subsp. aureus Btn1260] gi|282596273|gb|EFC01234.1| putative deoxyribodipyrimidine photolyase [Staphylococcus aureus subsp. aureus C160] gi|283790971|gb|EFC29786.1| putative deoxyribodipyrimidine photolyase [Staphylococcus aureus subsp. aureus A017934/97] gi|290921070|gb|EFD98131.1| putative deoxyribodipyrimidine photolyase [Staphylococcus aureus subsp. aureus M1015] gi|291095580|gb|EFE25841.1| deoxyribodipyrimidine photo-lyase [Staphylococcus aureus subsp. aureus 58-424] gi|291467618|gb|EFF10133.1| deoxyribodipyrimidine photo-lyase [Staphylococcus aureus subsp. aureus M809] gi|295128655|gb|EFG58286.1| deoxyribodipyrimidine photo-lyase [Staphylococcus aureus subsp. aureus EMRSA16] gi|297576683|gb|EFH95398.1| deoxyribodipyrimidine photo-lyase [Staphylococcus aureus subsp. aureus MN8] gi|312438887|gb|ADQ77958.1| deoxyribodipyrimidine photo-lyase [Staphylococcus aureus subsp. aureus TCH60] gi|315194306|gb|EFU24698.1| putative DNA photolyase [Staphylococcus aureus subsp. aureus CGS00] Length = 457 Score = 268 bits (685), Expect = 2e-69, Method: Composition-based stats. Identities = 136/479 (28%), Positives = 227/479 (47%), Gaps = 31/479 (6%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M++ ++ L R+ N L+ + + A + PE+ S ++ F +L Sbjct: 1 MAIAVL-LNRMFRMEHNP-LFEYIYQQKEDIDACYFIIPEE-DMSSASDLKAQFYRGTLQ 57 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 + +SL + + + S + + S+C + ++++ + +L +R Sbjct: 58 RFYQSL-------HAEKLTPYVMSYDDIISFCKENNISEVVIAGDIMSYHLEEYDILHQR 110 Query: 127 L---QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIR 183 + R+ + +N + YKV+T F K L D+ + + Sbjct: 111 SLFNEARIAVTLIRGNHYFKASKTMNQQGEPYKVFTSFSKKWRPYLRHRDVYHYDLKSFE 170 Query: 184 LTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS 243 +P ++ F D F + I EQN + F + + Y RD TS Sbjct: 171 DFVIASPDDLV-FDDIAFGSS----QIIEQN---KWQHFLDQDIQNYESGRDYLPEVLTS 222 Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCM 303 QLS L+ G+L + +N L + + ++ +++ ELI+REFY LM YP Sbjct: 223 QLSVALAYGLLDIIEIFNDLLARY----DEDEANYEAFIRELIFREFYYVLMTQYPETSY 278 Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363 + F +I+W+++ AW +G TGFPIIDAA+ +L G+MHNR+RM+ + FL K Sbjct: 279 -QAFKSKYRQIKWSQNEADFNAWCEGQTGFPIIDAAIMELTQTGFMHNRMRMVVSQFLTK 337 Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423 DL +DW GE++F L+D D ASN GWQW+ASTG D+VPYFR+FNP Q +RFDP+ Sbjct: 338 DLFIDWTWGEKFFRKHLIDYDAASNIHGWQWSASTGTDAVPYFRMFNPIRQSERFDPKAL 397 Query: 424 FIRHWLPELNNVPTQYIHAPHSWLD-----KNDLSLNYPLPIVDHKKACHHTLNQYYAA 477 +I+ +LP N + +Y+H +L +YP +VDH++ L + A Sbjct: 398 YIKTYLPIFNQIDAKYLHDTQRNESNLFELGIELGRHYPRQMVDHQEKRTQVLAAFKAL 456 >gi|327484373|gb|AEA78780.1| Deoxyribodipyrimidine photolyase, single-strand- specific [Vibrio cholerae LMA3894-4] Length = 462 Score = 268 bits (685), Expect = 2e-69, Method: Composition-based stats. Identities = 112/432 (25%), Positives = 182/432 (42%), Gaps = 22/432 (5%) Query: 6 AMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFI---ATP---EQWRQHGISARQSH 59 + + L W NDLR+ DN L A D ++I ++ TP +Q + Sbjct: 2 SKKIGLYWFTNDLRVNDNPLLEQASQQVD-RLICLYCYPSITPFLARYAQQTQWGEAKKR 60 Query: 60 FIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRR 119 F+ +L + SLS G + + L Q +T ++ + +E + Sbjct: 61 FLNQTLADLDHSLSTLGQKLWVTPLLPY----QALRHLLTQVEITDIYVDAMAGSDERQA 116 Query: 120 DKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPV 179 + + I + S+L P + + +T FR + + L S P+ Sbjct: 117 IARIHQDFSSVHIHQQALHSLLSEP-QLPFALEALPSTFTQFR----KQVETLSLSSAPI 171 Query: 180 PAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNAL-HILRKFCKEKVYYYVEQRD-IP 237 R+ P+ D + F GEQ L H F Y E R+ + Sbjct: 172 GYPRVLPPIEQGWQLPLMDIVTEPNHSAFVGGEQAGLTHCQNYFSSMLPSRYKETRNGLD 231 Query: 238 AIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAF 297 + +++ SP+L++G +SP+ + L+ + + + EL+WRE++ Sbjct: 232 GMDYSTKFSPWLALGAVSPKTIYAILQRY--EAVHGANDSTYWIFFELLWREYFYWYARR 289 Query: 298 YPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMIT 357 Y + I + + + + WK G T FPI++A MRQLN G+M NR R + Sbjct: 290 YGAKLFRFSGIGEKKPLT-SFYAQRFLQWKLGDTPFPIVNACMRQLNQTGYMSNRGRQLV 348 Query: 358 ASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKR 417 AS LV +L +DWR G YF +QL+D D+ SN G WQ+ A G D R FN Q Sbjct: 349 ASCLVHELGLDWRYGAAYFETQLMDYDVGSNWGNWQYLAGVGADPRG-SRQFNLEKQAHT 407 Query: 418 FDPQGTFIRHWL 429 +DP+G F+ W Sbjct: 408 YDPKGEFVAKWC 419 >gi|298208129|ref|YP_003716308.1| probable bacterial cryptochrome [Croceibacter atlanticus HTCC2559] gi|83848050|gb|EAP85920.1| probable bacterial cryptochrome [Croceibacter atlanticus HTCC2559] Length = 421 Score = 268 bits (685), Expect = 2e-69, Method: Composition-based stats. Identities = 110/425 (25%), Positives = 193/425 (45%), Gaps = 26/425 (6%) Query: 21 TDNKALYAACHNSDAKVIAVFIATPEQWRQHGIS-----ARQSHFIYASLLQVQKSLSQK 75 DN L A N++ VIAV+ P + ++ F+ ++ ++++L +K Sbjct: 2 NDNAVLNHAVANNN-PVIAVYCFDPRHFTTTTFGFKKTGPYRAQFLIETIKNLKETLKEK 60 Query: 76 GIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ-HRVICK 134 I + + ++ ++Y +++ E + L+++ ++ V Sbjct: 61 NITLVVSLTKPEHC----ISTLVKNHNISAVYYQKEWTQEEQEVEHLVKESIKTSEVTLH 116 Query: 135 SFDDSVLLPPGSILNHA-LQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPSNI 193 S+ D L P I + ++ K+YT FRKA + V L +L + + I Sbjct: 117 SYYDQFLFHPKDIPFSSINEIPKIYTAFRKACEKKAVVRPLVNLEINLPKTNLLNEDYAI 176 Query: 194 PRFFDYPFQAI----DPMFP--IGEQNALHILRKFCKE--KVYYYVEQRD-IPAIQGTSQ 244 P+ D+ + FP GE L + ++ + + Y E R+ + + +S+ Sbjct: 177 PKLKDFGLSEFTVHPNTAFPYKGGETEGLKRINEYHWDTNHIASYKETRNGMIGSEYSSK 236 Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304 S +L+ G +S RQ + +K+ + +K + + ELIWR+++ ++ Y + Sbjct: 237 YSAWLANGSISARQIYWDIKDY--EKKVKKNQSTYWMIFELIWRDYFMYISLKYGNSIFK 294 Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364 I ++ WNK L+ W G T + ++A M +L GWM NR R AS+ K+ Sbjct: 295 LNGI-LSKDYNWNKSKSALKQWINGTTPYDFVNANMIELKETGWMSNRGRQNVASYWAKE 353 Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424 L DWRIG YF S L+D D+ SN G W + A GND P R FN +Q KR+DP + Sbjct: 354 LQQDWRIGASYFESLLIDYDVHSNYGNWMYNAGVGND--PRDRKFNIQLQAKRYDPNREY 411 Query: 425 IRHWL 429 + WL Sbjct: 412 RKLWL 416 >gi|282918481|ref|ZP_06326218.1| deoxyribodipyrimidine photo-lyase [Staphylococcus aureus subsp. aureus C427] gi|282317615|gb|EFB47987.1| deoxyribodipyrimidine photo-lyase [Staphylococcus aureus subsp. aureus C427] Length = 457 Score = 268 bits (684), Expect = 2e-69, Method: Composition-based stats. Identities = 136/479 (28%), Positives = 227/479 (47%), Gaps = 31/479 (6%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M++ ++ L R+ N L+ + + A + PE+ S ++ F +L Sbjct: 1 MAIAVL-LNRMFRMEHNP-LFEYIYQQKEDIDACYFIIPEE-DMSSASDLKAQFYRGTLQ 57 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 + +SL + + + S + + S+C + ++++ + +L +R Sbjct: 58 RFYQSL-------HAEKLTPYVMSYDDIISFCKENNISEVVIAGDIMSYHLEEYDILHQR 110 Query: 127 L---QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIR 183 + R+ + +N + YKV+T F K L D+ + + Sbjct: 111 SLFNEARIAVTLIRGNHYFKASKTMNQQGEPYKVFTSFSKKWRPYLRYRDVYHYDLKSFE 170 Query: 184 LTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS 243 +P ++ F D F + I EQN + F + + Y RD TS Sbjct: 171 DFVIASPDDLV-FDDIAFGSS----QIIEQN---KWQHFLDQDIQNYESGRDYLPEVLTS 222 Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCM 303 QLS L+ G+L + +N L + + ++ +++ ELI+REFY LM YP Sbjct: 223 QLSVALAYGLLDIIEIFNDLLARY----DEDEANYEAFIRELIFREFYYVLMTQYPETSY 278 Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363 + F +I+W+++ AW +G TGFPIIDAA+ +L G+MHNR+RM+ + FL K Sbjct: 279 -QAFKSKYRQIKWSQNEADFNAWCEGQTGFPIIDAAIMELTQTGFMHNRMRMVVSQFLTK 337 Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423 DL +DW GE++F L+D D ASN GWQW+ASTG D+VPYFR+FNP Q +RFDP+ Sbjct: 338 DLFIDWTWGEKFFRKHLIDYDAASNIHGWQWSASTGTDAVPYFRMFNPIRQSERFDPKAL 397 Query: 424 FIRHWLPELNNVPTQYIHAPHSWLD-----KNDLSLNYPLPIVDHKKACHHTLNQYYAA 477 +I+ +LP N + +Y+H +L +YP +VDH++ L + A Sbjct: 398 YIKTYLPIFNQIDAKYLHDTQRNESNLFELGIELGRHYPRQMVDHQEKRTQVLAAFKAL 456 >gi|110004787|emb|CAK99121.1| putative deoxyribodipyrimidine photolyase protein [Spiroplasma citri] Length = 435 Score = 268 bits (684), Expect = 2e-69, Method: Composition-based stats. Identities = 133/476 (27%), Positives = 208/476 (43%), Gaps = 56/476 (11%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGI-SARQSHFIYASLLQ 67 +++ D RI DN L N + K+ +FI T EQ + + S+R + L Q Sbjct: 1 MNIFIFHRDFRIEDNLGLAQ-LANEEKKIYLLFIFTKEQIKANNYFSSRSFQAMVHCLKQ 59 Query: 68 VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127 + K + + + N I++L ++ K++ NR Y + R K + + Sbjct: 60 LTKK-----VHVNFLKSENEQTGIKFL--LEQGYKINKIYTNRDYTPFALNRSKAMRQLS 112 Query: 128 QH-RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSL---PVPAIR 183 + I + FDD VLL P +I Y V+TPF L ++ + + P Sbjct: 113 KEYNFIYREFDDYVLLEPWTIKTTQNGYYTVFTPFWNKLKEHFNDNHIITYKVNPFLPQH 172 Query: 184 LTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ-GT 242 L +I F + + A+ L + Y + RD+ ++ GT Sbjct: 173 LKDLEILQDITNVKSSDFNLPLEFEKV--KTAMFQLNQ-------NYQQTRDLVDLENGT 223 Query: 243 SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAF---YP 299 +++S L GV+S RQC+ E+F ++ +L WR+FY + + Sbjct: 224 AKISTALKFGVVSIRQCYLWSIEKFGTFDN-------AFARQLAWRDFYYQVTYNAQLHQ 276 Query: 300 SVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITAS 359 C + + I W + Q W+ G TG+ IDA M++L G +HNR RM+ AS Sbjct: 277 QWCFSENWNKKI-TINWTNNLEWFQKWQNGETGYDFIDAGMKELKETGLLHNRARMVCAS 335 Query: 360 FLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFD 419 FLVK+L +DW GE+YF QL+D D N WQW A TG D+ P+FRIFNP +Q K++D Sbjct: 336 FLVKNLQIDWHKGEQYFAQQLIDYDPIINQCSWQWVAGTGFDAQPFFRIFNPELQQKKYD 395 Query: 420 PQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYY 475 P ++ + L N PT IVD+K + L Y Sbjct: 396 PTSSYCNKF---LKNRPTI-------------------NKIVDYKISVKKALEIYK 429 >gi|15641404|ref|NP_231036.1| deoxyribodipyrimidine photolyase, putative [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121590807|ref|ZP_01678134.1| cryptochrome Cry2 [Vibrio cholerae 2740-80] gi|153817778|ref|ZP_01970445.1| cryptochrome Cry2 [Vibrio cholerae NCTC 8457] gi|153821321|ref|ZP_01973988.1| cryptochrome Cry2 [Vibrio cholerae B33] gi|227081563|ref|YP_002810114.1| putative deoxyribodipyrimidine photolyase [Vibrio cholerae M66-2] gi|229505031|ref|ZP_04394541.1| deoxyribodipyrimidine photolyase/cryptochrome family protein [Vibrio cholerae BX 330286] gi|229511299|ref|ZP_04400778.1| deoxyribodipyrimidine photolyase/cryptochrome family protein [Vibrio cholerae B33] gi|229518417|ref|ZP_04407861.1| deoxyribodipyrimidine photolyase/cryptochrome family protein [Vibrio cholerae RC9] gi|229608035|ref|YP_002878683.1| deoxyribodipyrimidine photolyase/cryptochrome family protein [Vibrio cholerae MJ-1236] gi|254848511|ref|ZP_05237861.1| cryptochrome Cry2 [Vibrio cholerae MO10] gi|255745773|ref|ZP_05419721.1| deoxyribodipyrimidine photolyase/cryptochrome family protein [Vibrio cholera CIRS 101] gi|262158947|ref|ZP_06030059.1| deoxyribodipyrimidine photolyase/cryptochrome family protein [Vibrio cholerae INDRE 91/1] gi|298498528|ref|ZP_07008335.1| cryptochrome Cry2 [Vibrio cholerae MAK 757] gi|81858115|sp|Q9KS67|CRY2_VIBCH RecName: Full=Cryptochrome-like protein cry2 gi|9655888|gb|AAF94550.1| deoxyribodipyrimidine photolyase, putative [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121547333|gb|EAX57450.1| cryptochrome Cry2 [Vibrio cholerae 2740-80] gi|126511716|gb|EAZ74310.1| cryptochrome Cry2 [Vibrio cholerae NCTC 8457] gi|126521139|gb|EAZ78362.1| cryptochrome Cry2 [Vibrio cholerae B33] gi|227009451|gb|ACP05663.1| putative deoxyribodipyrimidine photolyase [Vibrio cholerae M66-2] gi|229345132|gb|EEO10106.1| deoxyribodipyrimidine photolyase/cryptochrome family protein [Vibrio cholerae RC9] gi|229351264|gb|EEO16205.1| deoxyribodipyrimidine photolyase/cryptochrome family protein [Vibrio cholerae B33] gi|229357254|gb|EEO22171.1| deoxyribodipyrimidine photolyase/cryptochrome family protein [Vibrio cholerae BX 330286] gi|229370690|gb|ACQ61113.1| deoxyribodipyrimidine photolyase/cryptochrome family protein [Vibrio cholerae MJ-1236] gi|254844216|gb|EET22630.1| cryptochrome Cry2 [Vibrio cholerae MO10] gi|255736848|gb|EET92245.1| deoxyribodipyrimidine photolyase/cryptochrome family protein [Vibrio cholera CIRS 101] gi|262029132|gb|EEY47784.1| deoxyribodipyrimidine photolyase/cryptochrome family protein [Vibrio cholerae INDRE 91/1] gi|297542861|gb|EFH78911.1| cryptochrome Cry2 [Vibrio cholerae MAK 757] Length = 504 Score = 268 bits (684), Expect = 2e-69, Method: Composition-based stats. Identities = 108/484 (22%), Positives = 189/484 (39%), Gaps = 30/484 (6%) Query: 8 SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67 ++LVWL+ DLR+TD+ L AA S + +++ P S R F++ SL Sbjct: 3 KINLVWLKRDLRLTDHAPLQAAL-TSGRPTLLLYLFEPMLLGDAHYSERHWRFVWQSLQA 61 Query: 68 VQKSLSQ-KGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEIN-EVRRDKLLEK 125 + + L+Q KG V D + + ++ +++ + +RD L + Sbjct: 62 INRDLAQSKGEVLIV-----TSDWQTCFARIAERYAIEAIYSHQEVGLACTFQRDLALAQ 116 Query: 126 RLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185 Q I P +++ A +++ + DL + Sbjct: 117 WCQQHDIVWHE-----FPYAAVIRGAQTRKNWDEHWQQVMRSPCCDPDLTRANWLKLDAA 171 Query: 186 GPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIP--AIQGTS 243 S+IP + M G A L F + Y P A S Sbjct: 172 TLGLRSDIPATW---QSKQAGMQTGGSDMAWATLEDFFARRGREYYRSISSPSLARHACS 228 Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCM 303 ++SPYL+ G +S R+ + L + + + A S + L W + + Sbjct: 229 RMSPYLAWGNISLREMYQTLLKHWSVAGFRRSLIALS--SRLHWHCHFIQKFESECEMEF 286 Query: 304 GKPFIPWTEKIEWNKDS--HLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFL 361 + ++ + D+ L AW+ G+TG P++DA MR L G+++ R+R + S L Sbjct: 287 RCVNRAYDSLLQQSSDAPAAQLAAWQTGHTGIPLVDACMRCLIQTGYLNFRMRAMLVSVL 346 Query: 362 VKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQ 421 + VDWR G Y LD + + +Q G RI+NPT Q + D + Sbjct: 347 THHMNVDWRAGVTYLAQLFLDFEPGIHYPQFQMQ--AGVTGTNTIRIYNPTKQAQEHDSE 404 Query: 422 GTFIRHWLPELNNVPTQYIHAPH------SWLDKNDLSLNYPLPIVDHKKACHHTLNQYY 475 G FI W+PEL VP + P + + + L Y P++D + + ++ + Sbjct: 405 GQFIHKWVPELAQVPVPLLFEPWLMTPLEAQMYQVPLESPYLKPVMDLEASAKQARDRLW 464 Query: 476 AAKK 479 +K Sbjct: 465 QWQK 468 >gi|49485563|ref|YP_042784.1| putative DNA photolyase [Staphylococcus aureus subsp. aureus MSSA476] gi|253731313|ref|ZP_04865478.1| deoxyribodipyrimidine photo-lyase [Staphylococcus aureus subsp. aureus USA300_TCH959] gi|297208585|ref|ZP_06925014.1| deoxyribodipyrimidine photo-lyase [Staphylococcus aureus subsp. aureus ATCC 51811] gi|49244006|emb|CAG42432.1| putative DNA photolyase [Staphylococcus aureus subsp. aureus MSSA476] gi|253725054|gb|EES93783.1| deoxyribodipyrimidine photo-lyase [Staphylococcus aureus subsp. aureus USA300_TCH959] gi|296886840|gb|EFH25744.1| deoxyribodipyrimidine photo-lyase [Staphylococcus aureus subsp. aureus ATCC 51811] gi|329729546|gb|EGG65947.1| FAD binding domain of DNA photolyase [Staphylococcus aureus subsp. aureus 21193] Length = 457 Score = 268 bits (684), Expect = 2e-69, Method: Composition-based stats. Identities = 136/479 (28%), Positives = 229/479 (47%), Gaps = 31/479 (6%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M++ ++ L R+ N L+ + + A + PE+ S ++ F +L Sbjct: 1 MAIAVL-LNRMFRMEHNP-LFEYIYQQKEDIDACYFIIPEE-DMSSASDLKAQFYRGTLQ 57 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 + +SL + + + S + + S+C + ++++ + +L +R Sbjct: 58 RFYQSL-------HAEKLTPYVMSYDDIISFCKENNISEVVTAGDIMSYHLEEYDILHQR 110 Query: 127 L---QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIR 183 + R+ + +N + YKV+T F K L D+ + + Sbjct: 111 SLFNEARIAVTLIRGNHYFKASKTMNQQGEPYKVFTSFYKKWRPYLRHRDVYHYDLKSFE 170 Query: 184 LTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS 243 +P ++ F D F + I EQN + F + + Y RD TS Sbjct: 171 DFVIASPDDLV-FDDIAFGSS----QIIEQN---KWQHFLDQDIQNYESGRDYLPEVLTS 222 Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCM 303 QLS L+ G+L + +N L + + ++ +++ ELI+REFY LM YP Sbjct: 223 QLSVALAYGLLDIIEIFNDLLARY----DEDEANYEAFIRELIFREFYYVLMTQYPETSY 278 Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363 + F P +I+W+++ AW +G TGFPIIDAA+ +L G+MHNR+RM+ + FL K Sbjct: 279 -QAFKPKYRQIKWSQNEADFNAWCEGQTGFPIIDAAIMELTQTGFMHNRMRMVVSQFLTK 337 Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423 DL +DW GE++F L+D D ASN GWQW+ASTG D+VPYFR+FNP Q +RFD + Sbjct: 338 DLFIDWTWGEKFFRKHLIDYDAASNIHGWQWSASTGTDAVPYFRMFNPIRQSERFDAKAL 397 Query: 424 FIRHWLPELNNVPTQYIH-----APHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477 +I+ +LP N + +Y+H + + +L +YP +VDH++ L + A Sbjct: 398 YIKTYLPIFNQIDAKYLHDTQRNESNLFEQGIELGSHYPRQMVDHQEKRTQVLATFKAL 456 >gi|323455593|gb|EGB11461.1| hypothetical protein AURANDRAFT_20741 [Aureococcus anophagefferens] Length = 529 Score = 268 bits (684), Expect = 2e-69, Method: Composition-based stats. Identities = 121/512 (23%), Positives = 191/512 (37%), Gaps = 40/512 (7%) Query: 6 AMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASL 65 A VW R LR+ DN L A +++ +F+ P R + A + F+ SL Sbjct: 2 APKTTAVWFRKCLRLHDNAPLVEAAKRG-GRLLPIFVLDPHFARPEFVGAPRYRFLLESL 60 Query: 66 LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQ---RVTKLFYNRQ-YEINEVRRDK 121 + SL ++G + C +V + + + E V RD Sbjct: 61 ADLDASLRKRGSRLCVVRGETEATLDGLFAGACDALPGVKVDAILWEEELVEPWGVARDA 120 Query: 122 LLEKRLQHRVICKSF--DDSVLLPPGSILNHALQMYKVYTPFR-KALIQNLVQADLRSLP 178 + + R + S +L P +L P KA P Sbjct: 121 RVAAAAKARGVAASAVAGGHLLFDPREVLGACGGKAPTTMPAMVKAAAALGAVPAPLDPP 180 Query: 179 VPAIRLTGPVTPSNIPRFFDYPFQAIDPMF---PIGEQNALHILRKFCKEKVYYYVEQRD 235 + S++P ++A GE L L + + Sbjct: 181 ATLPPPPDGLPDSSVPTLEAMGYEAPPAAAFGVAGGESAGLARLEAALARDGGKWARAFE 240 Query: 236 IPAI--------QGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIW 287 P T+ LSPYL G +S R RL + + S L +L + Sbjct: 241 KPKTKSTKFDVDPSTTVLSPYLKFGCVSARLFRARLADVY--AGGSHAQPPTSLLGQLYF 298 Query: 288 REFYRHLMAFYPSVCMGKPFIPWTEKIEWNK------DSHLLQAWKQGYTGFPIIDAAMR 341 RE + + P P I W+ + L+AW+ G TG+P +DAAMR Sbjct: 299 REMAYANALKHGAAFAASP-SPVCADIPWDDPATDAAAAARLRAWEAGETGYPFVDAAMR 357 Query: 342 QLNTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGN 400 QL GW+H+ R A FL + DL + W G F LLD D A NN W A + Sbjct: 358 QLRETGWIHHLARHAVACFLTRGDLWLPWTEGARVFDRDLLDADWAVNNFNWLGLAGVAS 417 Query: 401 DSVPYFRIFNPTIQGKRF-----DPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSL- 454 S P+FR+++P K+ D G ++ ++PEL +P +Y +AP + + Sbjct: 418 WSPPFFRVYSPVPNHKQSSLNVDDAAGAYVDRFVPELRKLPAKYKYAPWTAPAAVLAAAG 477 Query: 455 -----NYPLPIVDHKKACHHTLNQYYAAKKQS 481 YP P+VDHK + ++ A++++ Sbjct: 478 VVLGDTYPRPLVDHKVQSKDNIARFKEAQQRN 509 >gi|253732866|ref|ZP_04867031.1| deoxyribodipyrimidine photo-lyase [Staphylococcus aureus subsp. aureus TCH130] gi|253729231|gb|EES97960.1| deoxyribodipyrimidine photo-lyase [Staphylococcus aureus subsp. aureus TCH130] Length = 457 Score = 267 bits (683), Expect = 2e-69, Method: Composition-based stats. Identities = 135/479 (28%), Positives = 228/479 (47%), Gaps = 31/479 (6%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M++ ++ L R+ N L+ + + A + PE+ S ++ F +L Sbjct: 1 MAIAVL-LNRMFRMEHNP-LFEYIYQQKEDIDACYFIIPEE-DMSSASDLKAQFYRGTLQ 57 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 + +SL + + + S + + S+C + ++++ + +L +R Sbjct: 58 RFYQSL-------HAEKLTPYVMSYDDIISFCKENNISEVVIAGDIMSYHLEEYDILHQR 110 Query: 127 L---QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIR 183 + R+ + +N + YKV+T F K L D+ + + Sbjct: 111 SLFNEARIAVTLIRGNHYFKASKTMNQQGEPYKVFTSFYKKWRPYLRHRDVYHYDLKSFE 170 Query: 184 LTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS 243 +P ++ F D F + I EQN + F + + Y RD TS Sbjct: 171 DFVIASPDDLV-FDDIAFGSS----QIIEQN---KWQHFLDQDIQNYESGRDYLPEVLTS 222 Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCM 303 QLS L+ G+L + +N L + + ++ +++ ELI+REFY LM YP Sbjct: 223 QLSVALAYGLLDIIEIFNDLLARY----DQDEANYEAFIRELIFREFYYVLMTQYPETSY 278 Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363 + F P +I+W+++ W +G TGFPIIDAA+ +L G+MHNR+RM+ + FL K Sbjct: 279 -QAFKPKYRQIKWSQNETDFNVWCEGQTGFPIIDAAIMELTQTGFMHNRMRMVVSQFLTK 337 Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423 DL +DW GE++F L+D D ASN GWQW+ASTG D+VPYFR+FNP Q +RFD + Sbjct: 338 DLFIDWTWGEKFFRKHLIDYDAASNIHGWQWSASTGTDAVPYFRMFNPIRQSERFDAKAL 397 Query: 424 FIRHWLPELNNVPTQYIH-----APHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477 +I+ +LP N + +Y+H + + +L +YP +VDH++ L + A Sbjct: 398 YIKTYLPIFNQIDAKYLHDTQRNESNLFEQGIELGRHYPRQMVDHQEKRTQVLATFKAL 456 >gi|229529536|ref|ZP_04418926.1| deoxyribodipyrimidine photolyase/cryptochrome family protein [Vibrio cholerae 12129(1)] gi|229333310|gb|EEN98796.1| deoxyribodipyrimidine photolyase/cryptochrome family protein [Vibrio cholerae 12129(1)] Length = 485 Score = 267 bits (683), Expect = 2e-69, Method: Composition-based stats. Identities = 109/484 (22%), Positives = 190/484 (39%), Gaps = 30/484 (6%) Query: 8 SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67 ++LVWL+ DLR+TD+ L AA S + +++ P S R F++ SL Sbjct: 3 KINLVWLKRDLRLTDHAPLQAAL-TSGRPTLLLYLFEPMLLGDAHYSERHWRFVWQSLQA 61 Query: 68 VQKSLSQ-KGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEIN-EVRRDKLLEK 125 + + L+Q KG V D + + ++ +++ + +RD L + Sbjct: 62 INRDLAQSKGEVLIV-----TSDWQTCFARIAERYAIEAIYSHQEVGLACTFQRDLALAQ 116 Query: 126 RLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185 Q I LP +++ A +++ + DL + Sbjct: 117 WCQQHDIVWHQ-----LPYAAVIRGAQTRKNWDEHWQQVMRSPCCDPDLTRANWLKLDAA 171 Query: 186 GPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIP--AIQGTS 243 S+IP + M G A L F + Y P A S Sbjct: 172 ALGLRSDIPATW---QSKQAGMQTGGSDMAWATLEDFFARRGREYYRSISSPSLARHACS 228 Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCM 303 ++SPYL+ G +S R+ + L + + + A S + L W + + Sbjct: 229 RMSPYLAWGNISLREMYQTLLKHWSVAGFRRSLIALS--SRLHWHCHFIQKFESECEMEF 286 Query: 304 GKPFIPWTEKIEWNKDS--HLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFL 361 + ++ + D+ L AW+ G+TG P++DA MR L G+++ R+R + S L Sbjct: 287 RCVNRAYDSLLQQSSDAPAAQLAAWQTGHTGIPLVDACMRCLIQTGYLNFRMRAMLVSVL 346 Query: 362 VKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQ 421 + VDWR G Y LD + + +Q G RI+NPT Q + D + Sbjct: 347 THHMNVDWRAGVTYLAQLFLDFEPGIHYPQFQMQ--AGVTGTNTIRIYNPTKQAQEHDSE 404 Query: 422 GTFIRHWLPELNNVPTQYIHAPH------SWLDKNDLSLNYPLPIVDHKKACHHTLNQYY 475 G FI W+PEL VP + P + + + L Y P++D + + ++ + Sbjct: 405 GQFIHKWVPELAQVPVPLLFEPWLMTPLEAQMYQVPLESPYLKPVMDLEASAKQARDRLW 464 Query: 476 AAKK 479 +K Sbjct: 465 QWQK 468 >gi|229521502|ref|ZP_04410921.1| deoxyribodipyrimidine photolyase/cryptochrome family protein [Vibrio cholerae TM 11079-80] gi|229341600|gb|EEO06603.1| deoxyribodipyrimidine photolyase/cryptochrome family protein [Vibrio cholerae TM 11079-80] Length = 499 Score = 267 bits (683), Expect = 3e-69, Method: Composition-based stats. Identities = 108/484 (22%), Positives = 189/484 (39%), Gaps = 30/484 (6%) Query: 8 SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67 ++LVWL+ DLR+TD+ L AA S + +++ P S R F++ SL Sbjct: 3 KINLVWLKRDLRLTDHAPLQAAL-TSGRPTLLLYLFEPMLLGDAHYSERHWRFVWQSLQA 61 Query: 68 VQKSLSQ-KGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEIN-EVRRDKLLEK 125 + + L+Q KG V D + + ++ +++ + +RD L + Sbjct: 62 INRDLAQSKGEVLIV-----TSDWQTCFSRLAERYAIEAIYSHQEVGLACTFQRDLALAQ 116 Query: 126 RLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185 Q I P +++ A +++ + DL + Sbjct: 117 WCQQHDIVWHE-----FPYAAVIRGAQTRKNWDEHWQQVMRSPCCDPDLTRANWLKLDAA 171 Query: 186 GPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIP--AIQGTS 243 S+IP + M G A L F + Y P A S Sbjct: 172 VLGLRSDIPATW---QSKQAGMQTGGSDMAWATLEDFFARRGREYYRSISSPSLARHACS 228 Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCM 303 ++SPYL+ G +S R+ + L + + + A S + L W + + Sbjct: 229 RMSPYLAWGNISLREMYQTLLKHWSVAGFRRSLIALS--SRLHWHCHFIQKFESECEMEF 286 Query: 304 GKPFIPWTEKIEWNKDS--HLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFL 361 + ++ + D+ L AW+ G+TG P++DA MR L G+++ R+R + S L Sbjct: 287 RCVNRAYDSLLQQSSDAPAAQLAAWQTGHTGIPLVDACMRCLIQTGYLNFRMRAMLVSVL 346 Query: 362 VKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQ 421 + VDWR G Y LD + + +Q G RI+NPT Q + D + Sbjct: 347 THHMNVDWRAGVTYLAQLFLDFEPGIHYPQFQMQ--AGVTGTNTIRIYNPTKQAQEHDSE 404 Query: 422 GTFIRHWLPELNNVPTQYIHAPH------SWLDKNDLSLNYPLPIVDHKKACHHTLNQYY 475 G FI W+PEL VP + P + + + L Y P++D + + ++ + Sbjct: 405 GQFIHKWVPELAQVPVPLLFEPWLMTPLEAQMYQVPLESPYLKPVMDLEASAKQARDRLW 464 Query: 476 AAKK 479 +K Sbjct: 465 QWQK 468 >gi|121727525|ref|ZP_01680637.1| cryptochrome Cry2 [Vibrio cholerae V52] gi|147673506|ref|YP_001216950.1| cryptochrome Cry2 [Vibrio cholerae O395] gi|153212697|ref|ZP_01948354.1| cryptochrome Cry2 [Vibrio cholerae 1587] gi|262169310|ref|ZP_06037002.1| deoxyribodipyrimidine photolyase/cryptochrome family protein [Vibrio cholerae RC27] gi|121630109|gb|EAX62512.1| cryptochrome Cry2 [Vibrio cholerae V52] gi|124116347|gb|EAY35167.1| cryptochrome Cry2 [Vibrio cholerae 1587] gi|146315389|gb|ABQ19928.1| cryptochrome Cry2 [Vibrio cholerae O395] gi|227013307|gb|ACP09517.1| putative deoxyribodipyrimidine photolyase [Vibrio cholerae O395] gi|262022123|gb|EEY40832.1| deoxyribodipyrimidine photolyase/cryptochrome family protein [Vibrio cholerae RC27] Length = 504 Score = 267 bits (683), Expect = 3e-69, Method: Composition-based stats. Identities = 108/484 (22%), Positives = 189/484 (39%), Gaps = 30/484 (6%) Query: 8 SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67 ++LVWL+ DLR+TD+ L AA S + +++ P S R F++ SL Sbjct: 3 KINLVWLKRDLRLTDHAPLQAAL-TSGRPTLLLYLFEPMLLGDAHYSERHWRFVWQSLQA 61 Query: 68 VQKSLSQ-KGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEIN-EVRRDKLLEK 125 + + L+Q KG V D + + ++ +++ + +RD L + Sbjct: 62 INRDLAQSKGEVLIV-----TSDWQTCFARIAERYAIEAIYSHQEVGLACTFQRDLALAQ 116 Query: 126 RLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185 Q I P +++ A +++ + DL + Sbjct: 117 WCQQHDIVWHE-----FPYAAVIRGAQTRKNWDEHWQQVMRSPCCDPDLTRANWLKLDAA 171 Query: 186 GPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIP--AIQGTS 243 S+IP + M G A L F + Y P A S Sbjct: 172 TLGLRSDIPATW---QSKQAGMQTGGSDMAWATLEDFFVRRGREYYRSISSPSLARHACS 228 Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCM 303 ++SPYL+ G +S R+ + L + + + A S + L W + + Sbjct: 229 RMSPYLAWGNISLREMYQTLLKHWSVAGFRRSLIALS--SRLHWHCHFIQKFESECEMEF 286 Query: 304 GKPFIPWTEKIEWNKDS--HLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFL 361 + ++ + D+ L AW+ G+TG P++DA MR L G+++ R+R + S L Sbjct: 287 RCVNRAYDSLLQQSSDAPAAQLAAWQTGHTGIPLVDACMRCLIQTGYLNFRMRAMLVSVL 346 Query: 362 VKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQ 421 + VDWR G Y LD + + +Q G RI+NPT Q + D + Sbjct: 347 THHMNVDWRAGVTYLAQLFLDFEPGIHYPQFQMQ--AGVTGTNTIRIYNPTKQAQEHDSE 404 Query: 422 GTFIRHWLPELNNVPTQYIHAPH------SWLDKNDLSLNYPLPIVDHKKACHHTLNQYY 475 G FI W+PEL VP + P + + + L Y P++D + + ++ + Sbjct: 405 GQFIHKWVPELAQVPVPLLFEPWLMTPLEAQMYQVPLESPYLKPVMDLEASAKQARDRLW 464 Query: 476 AAKK 479 +K Sbjct: 465 QWQK 468 >gi|254224954|ref|ZP_04918569.1| RNA-binding cryptochrome Cry1 [Vibrio cholerae V51] gi|125622642|gb|EAZ50961.1| RNA-binding cryptochrome Cry1 [Vibrio cholerae V51] Length = 461 Score = 267 bits (683), Expect = 3e-69, Method: Composition-based stats. Identities = 112/432 (25%), Positives = 181/432 (41%), Gaps = 23/432 (5%) Query: 6 AMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFI---ATP---EQWRQHGISARQSH 59 + + L W NDLR+ DN L A D ++I ++ TP +Q + Sbjct: 2 SKKIGLYWFTNDLRVNDNPLLEQASQQVD-RLICLYCYPSITPFLARYAQQTQWGEAKKR 60 Query: 60 FIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRR 119 F+ +L + SLS G + + L Q +T ++ + +E + Sbjct: 61 FLNQTLADLDHSLSTLGQKLWVTPLLPY----QALRHLLTQVEITDIYVDAMAGSDERQA 116 Query: 120 DKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPV 179 + + I + S+L P + + +T FR V+ S P+ Sbjct: 117 IARIHQDFSSVHIHQQALHSLLSEP-QLPFALEALPSTFTQFR-----KQVETLSLSAPM 170 Query: 180 PAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNAL-HILRKFCKEKVYYYVEQRD-IP 237 R+ P+ D + F GEQ L H F Y E R+ + Sbjct: 171 GYPRVLPPIEQGWQLPLMDIVTEPNHSAFIGGEQAGLTHCQHYFSSMLPSCYKETRNGLD 230 Query: 238 AIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAF 297 + +++ SP+L++G +SP+ + L+ + + + EL+WRE++ Sbjct: 231 GMDYSTKFSPWLALGAVSPKTIYAMLQRY--EAVHGANDSTYWIFFELLWREYFYWYARR 288 Query: 298 YPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMIT 357 Y + I + + + + WK G T FPI++A MRQLN G+M NR R + Sbjct: 289 YGAKLFRFSGIGEKKPLT-SFYAQRFLQWKHGETPFPIVNACMRQLNQTGYMSNRGRQLV 347 Query: 358 ASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKR 417 AS LV +L +DWR G YF +QL+D D+ SN G WQ+ A G D R FN Q Sbjct: 348 ASCLVHELGLDWRYGAAYFETQLMDYDVGSNWGNWQYLAGVGADPRG-SRQFNLAKQAHT 406 Query: 418 FDPQGTFIRHWL 429 +DP+G F+ W Sbjct: 407 YDPKGEFVAKWC 418 >gi|88194464|ref|YP_499258.1| deoxyribodipyrimidine photolyase [Staphylococcus aureus subsp. aureus NCTC 8325] gi|87202022|gb|ABD29832.1| deoxyribodipyrimidine photolyase, putative [Staphylococcus aureus subsp. aureus NCTC 8325] gi|329728519|gb|EGG64952.1| FAD binding domain of DNA photolyase [Staphylococcus aureus subsp. aureus 21189] Length = 457 Score = 267 bits (683), Expect = 3e-69, Method: Composition-based stats. Identities = 135/479 (28%), Positives = 228/479 (47%), Gaps = 31/479 (6%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M++ ++ L R+ N L+ + + A + PE+ S ++ F +L Sbjct: 1 MAIAVL-LNRMFRMEHNP-LFEYIYQQKEDIDACYFIIPEE-DMSSASDLKAQFYRGTLQ 57 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 + +SL + + + S + + S+C + ++++ + +L +R Sbjct: 58 RFYQSL-------HAEKLTPYVMSYDDIISFCKENNISEVVTAGDIMSYHLEEYDILHQR 110 Query: 127 L---QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIR 183 + R+ + +N + Y V+T F K L D+ + + Sbjct: 111 SLFNEARIAVTLIRGNHYFKASKTMNQQGEPYNVFTSFYKKWRPYLRHRDVYHYDLKSFE 170 Query: 184 LTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS 243 +P ++ F D F + I EQN + F + + Y RD TS Sbjct: 171 NFVIASPDDLV-FDDIAFGSS----QIIEQN---KWQHFLDQDIQNYESGRDYLPEVLTS 222 Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCM 303 QLS L+ G+L + +N L + + ++ +++ ELI+REFY LM YP Sbjct: 223 QLSVALAYGLLDIIEIFNDLLARY----DEDEANYEAFIRELIFREFYYVLMTQYPETSY 278 Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363 + F P +I+W+++ AW +G TGFPIIDAA+ +L G+MHNR+RM+ + FL K Sbjct: 279 -QAFKPKYRQIKWSQNEADFNAWCEGQTGFPIIDAAIMELTQTGFMHNRMRMVVSQFLTK 337 Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423 DL +DW GE++F L+D D ASN GWQW+ASTG D+VPYFR+FNP Q +RFD + Sbjct: 338 DLFIDWTWGEKFFRKHLIDYDAASNIHGWQWSASTGTDAVPYFRMFNPIRQSERFDAKAL 397 Query: 424 FIRHWLPELNNVPTQYIH-----APHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477 +I+ +LP N + +Y+H + + +L +YP +VDH++ L + A Sbjct: 398 YIKTYLPIFNQIDAKYLHDTQRNESNLFEQGIELGSHYPRQMVDHQEKRTQVLATFKAL 456 >gi|57651532|ref|YP_185630.1| deoxyribodipyrimidine photolyase, putative [Staphylococcus aureus subsp. aureus COL] gi|87161809|ref|YP_493380.1| putative deoxyribodipyrimidine photolyase [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|151220872|ref|YP_001331694.1| hypothetical protein NWMN_0660 [Staphylococcus aureus subsp. aureus str. Newman] gi|161508955|ref|YP_001574614.1| deoxyribodipyrimidine photo-lyase [Staphylococcus aureus subsp. aureus USA300_TCH1516] gi|221140907|ref|ZP_03565400.1| deoxyribodipyrimidine photo-lyase [Staphylococcus aureus subsp. aureus str. JKD6009] gi|258452899|ref|ZP_05700893.1| conserved hypothetical protein [Staphylococcus aureus A5948] gi|262048427|ref|ZP_06021312.1| hypothetical protein SAD30_2154 [Staphylococcus aureus D30] gi|282921981|ref|ZP_06329679.1| deoxyribodipyrimidine photo-lyase [Staphylococcus aureus A9765] gi|284023713|ref|ZP_06378111.1| putative deoxyribodipyrimidine photolyase [Staphylococcus aureus subsp. aureus 132] gi|294849360|ref|ZP_06790103.1| deoxyribodipyrimidine photo-lyase [Staphylococcus aureus A9754] gi|304381695|ref|ZP_07364344.1| deoxyribodipyrimidine photo-lyase [Staphylococcus aureus subsp. aureus ATCC BAA-39] gi|57285718|gb|AAW37812.1| deoxyribodipyrimidine photolyase, putative [Staphylococcus aureus subsp. aureus COL] gi|87127783|gb|ABD22297.1| putative deoxyribodipyrimidine photolyase [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|150373672|dbj|BAF66932.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus str. Newman] gi|160367764|gb|ABX28735.1| possible deoxyribodipyrimidine photo-lyase [Staphylococcus aureus subsp. aureus USA300_TCH1516] gi|257859410|gb|EEV82264.1| conserved hypothetical protein [Staphylococcus aureus A5948] gi|259163515|gb|EEW48072.1| hypothetical protein SAD30_2154 [Staphylococcus aureus D30] gi|269940268|emb|CBI48645.1| putative DNA photolyase [Staphylococcus aureus subsp. aureus TW20] gi|282593834|gb|EFB98825.1| deoxyribodipyrimidine photo-lyase [Staphylococcus aureus A9765] gi|294823892|gb|EFG40318.1| deoxyribodipyrimidine photo-lyase [Staphylococcus aureus A9754] gi|302750590|gb|ADL64767.1| deoxyribodipyrimidine photolyase [Staphylococcus aureus subsp. aureus str. JKD6008] gi|304339798|gb|EFM05743.1| deoxyribodipyrimidine photo-lyase [Staphylococcus aureus subsp. aureus ATCC BAA-39] gi|315197666|gb|EFU28001.1| possible deoxyribodipyrimidine photo-lyase [Staphylococcus aureus subsp. aureus CGS01] gi|320139977|gb|EFW31838.1| FAD binding domain of DNA photolyase [Staphylococcus aureus subsp. aureus MRSA131] gi|320141933|gb|EFW33761.1| FAD binding domain of DNA photolyase [Staphylococcus aureus subsp. aureus MRSA177] gi|329313414|gb|AEB87827.1| Possible deoxyribodipyrimidine photo-lyase [Staphylococcus aureus subsp. aureus T0131] Length = 457 Score = 267 bits (682), Expect = 3e-69, Method: Composition-based stats. Identities = 135/479 (28%), Positives = 228/479 (47%), Gaps = 31/479 (6%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M++ ++ L R+ N L+ + + A + PE+ S ++ F +L Sbjct: 1 MAIAVL-LNRMFRMEHNP-LFEYIYQQKEDIDACYFIIPEE-DMSSASDLKAQFYRGTLQ 57 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 + +SL + + + S + + S+C + ++++ + +L +R Sbjct: 58 RFYQSL-------HAEKLTPYVMSYDDIISFCKENNISEVVTAGDIMSYHLEEYDILHQR 110 Query: 127 L---QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIR 183 + R+ + +N + Y V+T F K L D+ + + Sbjct: 111 SLFNEARIAVTLIRGNHYFKASKTMNQQGEPYNVFTSFYKKWRPYLRHRDVYHYDLKSFE 170 Query: 184 LTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS 243 +P ++ F D F + I EQN + F + + Y RD TS Sbjct: 171 DFVIASPDDLV-FDDIAFGSS----QIIEQN---KWQHFLDQDIQNYESGRDYLPEVLTS 222 Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCM 303 QLS L+ G+L + +N L + + ++ +++ ELI+REFY LM YP Sbjct: 223 QLSVALAYGLLDIIEIFNDLLARY----DEDEANYEAFIRELIFREFYYVLMTQYPETSY 278 Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363 + F P +I+W+++ AW +G TGFPIIDAA+ +L G+MHNR+RM+ + FL K Sbjct: 279 -QAFKPKYRQIKWSQNEADFNAWCEGQTGFPIIDAAIMELTQTGFMHNRMRMVVSQFLTK 337 Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423 DL +DW GE++F L+D D ASN GWQW+ASTG D+VPYFR+FNP Q +RFD + Sbjct: 338 DLFIDWTWGEKFFRKHLIDYDAASNIHGWQWSASTGTDAVPYFRMFNPIRQSERFDAKAL 397 Query: 424 FIRHWLPELNNVPTQYIH-----APHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477 +I+ +LP N + +Y+H + + +L +YP +VDH++ L + A Sbjct: 398 YIKTYLPIFNQIDAKYLHDTQRNESNLFEQGIELGSHYPRQMVDHQEKRTQVLATFKAL 456 >gi|153825249|ref|ZP_01977916.1| cryptochrome Cry2 [Vibrio cholerae MZO-2] gi|149741077|gb|EDM55136.1| cryptochrome Cry2 [Vibrio cholerae MZO-2] Length = 504 Score = 267 bits (682), Expect = 4e-69, Method: Composition-based stats. Identities = 109/484 (22%), Positives = 190/484 (39%), Gaps = 30/484 (6%) Query: 8 SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67 ++LVWL+ DLR+TD+ L AA S + +++ P S R F++ SL Sbjct: 3 KINLVWLKRDLRLTDHAPLQAAL-TSGRPTLLLYLFEPMLLGDAHYSERHWRFVWQSLQA 61 Query: 68 VQKSLSQ-KGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEIN-EVRRDKLLEK 125 + + L+Q KG V D + + ++ +++ + +RD L + Sbjct: 62 INRDLAQSKGEVLIV-----TSDWQTCFARIAERYAIEAIYSHQEVGLACTFQRDLALAQ 116 Query: 126 RLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185 Q I P +++ A +++ + DL S + Sbjct: 117 WCQQHDIVWHE-----FPYAAVIRGAQTRKNWDEHWQQVMRSPCCDPDLTSANWLKLDAA 171 Query: 186 GPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIP--AIQGTS 243 S+IP + M G A L F + Y P A S Sbjct: 172 TLGLRSDIPATW---QSKQAGMQTGGSDMAWATLEDFFVRRGREYYRSISSPSLARHACS 228 Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCM 303 ++SPYL+ G +S R+ + L + + + A S + L W + + Sbjct: 229 RMSPYLAWGNISLREMYQTLLKHWSVAGFRRSLIALS--SRLHWHCHFIQKFESECEMEF 286 Query: 304 GKPFIPWTEKIEWNKDS--HLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFL 361 + ++ + D+ L AW+ G+TG P++DA MR L G+++ R+R + S L Sbjct: 287 RCVNRAYDSLLQQSSDAPAAQLAAWQTGHTGIPLVDACMRCLIQTGYLNFRMRAMLVSVL 346 Query: 362 VKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQ 421 + VDWR G Y LD + + +Q G RI+NPT Q + D + Sbjct: 347 THHMNVDWRAGVTYLAQLFLDFEPGIHYPQFQMQ--AGVTGTNTIRIYNPTKQAQEHDSE 404 Query: 422 GTFIRHWLPELNNVPTQYIHAPH------SWLDKNDLSLNYPLPIVDHKKACHHTLNQYY 475 G FI W+PEL VP + P + + + L Y P++D + + ++ + Sbjct: 405 GQFIHKWVPELAQVPVPLLFEPWLMTPLEAQMYQIPLESPYLNPVMDLEASAKQARDRLW 464 Query: 476 AAKK 479 +K Sbjct: 465 QWQK 468 >gi|229523510|ref|ZP_04412915.1| deoxyribodipyrimidine photolyase/cryptochrome family protein [Vibrio cholerae bv. albensis VL426] gi|229337091|gb|EEO02108.1| deoxyribodipyrimidine photolyase/cryptochrome family protein [Vibrio cholerae bv. albensis VL426] Length = 506 Score = 267 bits (682), Expect = 4e-69, Method: Composition-based stats. Identities = 108/484 (22%), Positives = 189/484 (39%), Gaps = 30/484 (6%) Query: 8 SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67 ++LVWL+ DLR+TD+ L AA S + +++ P S R F++ SL Sbjct: 5 KINLVWLKRDLRLTDHAPLQAAL-TSGRPTLLLYLFEPMLLGDAHYSERHWRFVWQSLQA 63 Query: 68 VQKSLSQ-KGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEIN-EVRRDKLLEK 125 + + L+Q KG V D + + ++ +++ + +RD L + Sbjct: 64 INRDLAQSKGEVLIV-----TSDWQTCFARIAERYAIEAIYSHQEVGLACTFQRDLALAQ 118 Query: 126 RLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185 Q I P +++ A +++ + DL + Sbjct: 119 WCQQHDIVWHE-----FPYAAVIRGAQTRKNWDEHWQQVMRSPCCDPDLTRANWLKLDAA 173 Query: 186 GPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIP--AIQGTS 243 S+IP + M G A L F + Y P A S Sbjct: 174 TLGLRSDIPATW---QSKQAGMQTGGSDMAWATLEDFFARRGREYYRSISSPSLARHACS 230 Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCM 303 ++SPYL+ G +S R+ + L + + + A S + L W + + Sbjct: 231 RMSPYLAWGNISLREMYQTLLKHWSVAGFRRSLIALS--SRLHWHCHFIQKFESECEMEF 288 Query: 304 GKPFIPWTEKIEWNKDS--HLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFL 361 + ++ + D+ L AW+ G+TG P++DA MR L G+++ R+R + S L Sbjct: 289 RCVNRAYDSLLQQSSDAPAAQLAAWQTGHTGIPLVDACMRCLIQTGYLNFRMRAMLVSVL 348 Query: 362 VKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQ 421 + VDWR G Y LD + + +Q G RI+NPT Q + D + Sbjct: 349 THHMNVDWRAGVTYLAQLFLDFEPGIHYPQFQMQ--AGVTGTNTIRIYNPTKQAQEHDSE 406 Query: 422 GTFIRHWLPELNNVPTQYIHAPH------SWLDKNDLSLNYPLPIVDHKKACHHTLNQYY 475 G FI W+PEL VP + P + + + L Y P++D + + ++ + Sbjct: 407 GHFIHKWVPELAQVPVPLLFEPWLMTPLEAQMYQVPLESPYLKPVMDLEASAKQARDRLW 466 Query: 476 AAKK 479 +K Sbjct: 467 QWQK 470 >gi|219117169|ref|XP_002179379.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1] gi|217409270|gb|EEC49202.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1] Length = 585 Score = 266 bits (681), Expect = 4e-69, Method: Composition-based stats. Identities = 133/511 (26%), Positives = 224/511 (43%), Gaps = 48/511 (9%) Query: 3 ATTAMSVHLVWL-RNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHF- 60 A + +V +D+RI DN+AL ACH++ V+ VF+ Q H AR + Sbjct: 19 AHSLSRPAVVLFGTHDIRIHDNEALLLACHHN--HVLPVFLW---QVPVHHWGARGALQV 73 Query: 61 -IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRR 119 + +L Q+ LSQ+ I C N DS+ L + + +++NR+ Sbjct: 74 VLKEALHQLSLQLSQESINLPL-VCGNTADSVSELCKIASEIGASAVYWNREMTPESREM 132 Query: 120 DKLLEKRLQH-RVICKSFDDSVLLPPGSILNHALQMYKVY---TPFRKALIQNLVQADLR 175 ++ L+ + + ++L + + PF++A + L + D Sbjct: 133 ERHRATSLKQLDIAAVACQSALLYDVEKLELDEGFHGGHWGTLMPFKRACEKQLGKPDRP 192 Query: 176 SLPVPAIR----LTGPVTPSNIPRFFDYPFQAIDP----------MFPIGEQNALHILRK 221 L ++ + P + F+ + P FP+ A L Sbjct: 193 ILMKESLACLYSVAPPPQDCKSVPIEELGFETVPPSTKWDEPIRERFPMIHYLAQRRLDH 252 Query: 222 FCKEKVYYYVEQRDIPAIQG-TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFS 280 F + + Y R ++ TSQLS YL IG++SPR+ + R+++ + K + Sbjct: 253 FLIKGLPLYESDRSRADMEYATSQLSVYLRIGIISPRELYWRIEDSSLSPEAK-----KT 307 Query: 281 WLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEW---NKDSHLLQAWKQGYTGFPIID 337 + LIWRE + + +P + E EW +++ AWK+G TG+P++D Sbjct: 308 FARRLIWRELAYYQLFCFPK-MRDRSIRKHYEASEWVTGDEEKGRFNAWKRGLTGYPLVD 366 Query: 338 AAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAAS 397 A MR+L T G++ +RM+ ASFLV+ L VDW G E+F L D D A N+ WQ A Sbjct: 367 AGMRELYTTGYLTQSVRMVVASFLVEYLRVDWTKGAEWFHYTLADADSAINSMMWQNAGR 426 Query: 398 TGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKN------D 451 +G D + + +P + DP G + R W+PEL+ +P QY+ P + + Sbjct: 427 SGIDQWNF--VLSPENASQ--DPYGEYTRKWVPELSPLPLQYLQRPWQTFEGDLRMAGIV 482 Query: 452 LSLNYPLPIV-DHKKACHHTLNQYYAAKKQS 481 L YP IV D K ++ A +++S Sbjct: 483 LGETYPHRIVQDLKGERQKSVESVLAMRRRS 513 >gi|153828573|ref|ZP_01981240.1| RNA-binding cryptochrome Cry1 [Vibrio cholerae 623-39] gi|148875968|gb|EDL74103.1| RNA-binding cryptochrome Cry1 [Vibrio cholerae 623-39] Length = 461 Score = 266 bits (681), Expect = 4e-69, Method: Composition-based stats. Identities = 112/432 (25%), Positives = 181/432 (41%), Gaps = 23/432 (5%) Query: 6 AMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFI---ATP---EQWRQHGISARQSH 59 + + L W NDLR+ DN L A D ++I ++ TP +Q + Sbjct: 2 SKKIGLYWFTNDLRVNDNPLLEQAAQQVD-RLICLYCYPSITPFLARYAQQTQWGEAKKR 60 Query: 60 FIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRR 119 F+ +L + SLS G + + L Q +T ++ + +E + Sbjct: 61 FLNQTLADLDHSLSTLGQKLWVTPLLPY----QALRHLLTQVEITDIYVDAVAGSDERQA 116 Query: 120 DKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPV 179 + + I + S+L P + + +T FR V+ S P+ Sbjct: 117 IARIHQDFSSVHIHQQALHSLLSEP-QLPFALEALPSTFTQFR-----KQVETLSLSAPM 170 Query: 180 PAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNAL-HILRKFCKEKVYYYVEQRD-IP 237 R+ P+ D + F GEQ L H F Y E R+ + Sbjct: 171 GYPRVLPPIEQGWQLPLMDIVAEPNHSAFVGGEQAGLTHCQNYFSSMLPSRYKETRNGLD 230 Query: 238 AIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAF 297 + +++ SP+L++G +SP+ + L+ + + + EL+WRE++ Sbjct: 231 GMDYSTKFSPWLALGAVSPKTIYAMLQRY--EAVHGANDSTYWIFFELLWREYFYWYARR 288 Query: 298 YPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMIT 357 Y + I + + + + WK G T FPI++A MRQLN G+M NR R + Sbjct: 289 YGAKLFRFSGIGEKKPLT-SFYAQRFLQWKHGETPFPIVNACMRQLNQTGYMSNRGRQLV 347 Query: 358 ASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKR 417 AS LV +L +DWR G YF +QL+D D+ SN G WQ+ A G D R FN Q Sbjct: 348 ASCLVHELGLDWRYGAAYFETQLVDYDVGSNWGNWQYLAGVGADPRG-SRQFNLEKQAHT 406 Query: 418 FDPQGTFIRHWL 429 +DP+G F+ W Sbjct: 407 YDPKGEFVAKWC 418 >gi|297579336|ref|ZP_06941264.1| RNA-binding cryptochrome Cry1 [Vibrio cholerae RC385] gi|297536930|gb|EFH75763.1| RNA-binding cryptochrome Cry1 [Vibrio cholerae RC385] Length = 462 Score = 266 bits (681), Expect = 4e-69, Method: Composition-based stats. Identities = 112/432 (25%), Positives = 182/432 (42%), Gaps = 22/432 (5%) Query: 6 AMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFI---ATP---EQWRQHGISARQSH 59 + + L W NDLR+ DN L A D ++I ++ TP +Q + Sbjct: 2 SKKIGLYWFTNDLRVNDNPLLEQASQQVD-RLICLYCYPSITPFLARYAQQTQWGEAKKR 60 Query: 60 FIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRR 119 F+ +L + SLS G + + L Q +T ++ + +E + Sbjct: 61 FLNQTLADLDHSLSTLGQKLWVTPLFPY----QALRHLLTQVEITDIYVDAMAGSDERQA 116 Query: 120 DKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPV 179 + + I + S+L P + + +T FR + + L S P+ Sbjct: 117 IARIHQDFSSVHIHQQALHSLLSEP-QLPFALEALPSTFTQFR----KQVETLSLSSAPI 171 Query: 180 PAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNAL-HILRKFCKEKVYYYVEQRD-IP 237 R+ P+ D + F GEQ L H F Y E R+ + Sbjct: 172 GYPRVLPPIEQGWQLPLMDIVTEPNHSAFVGGEQAGLTHCQNYFSSMLPSRYKETRNGLD 231 Query: 238 AIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAF 297 + +++ SP+L++G +SP+ + L+ + + + EL+WRE++ Sbjct: 232 GMDYSTKFSPWLALGAVSPKTIYTMLQRY--EAVHGANDSTYWIFFELLWREYFYWYARR 289 Query: 298 YPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMIT 357 Y + I + + + + WK G T FPI++A MRQLN G+M NR R + Sbjct: 290 YGAKLFRFSGIGEKKPLT-SFYAQRFLQWKHGVTPFPIVNACMRQLNQTGYMSNRGRQLV 348 Query: 358 ASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKR 417 AS LV +L +DWR G YF +QL+D D+ SN G WQ+ A G D R FN Q Sbjct: 349 ASCLVHELGLDWRYGAAYFETQLVDYDVGSNWGNWQYLAGVGADPRG-SRQFNLAKQAHT 407 Query: 418 FDPQGTFIRHWL 429 +DP+G F+ W Sbjct: 408 YDPKGEFVAKWC 419 >gi|183179386|ref|ZP_02957597.1| cryptochrome Cry2 [Vibrio cholerae MZO-3] gi|183012797|gb|EDT88097.1| cryptochrome Cry2 [Vibrio cholerae MZO-3] Length = 504 Score = 266 bits (681), Expect = 4e-69, Method: Composition-based stats. Identities = 108/484 (22%), Positives = 189/484 (39%), Gaps = 30/484 (6%) Query: 8 SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67 ++LVWL+ DLR+TD+ L AA S + +++ P S R F++ SL Sbjct: 3 KINLVWLKRDLRLTDHAPLQAAL-TSGRPTLLLYLFEPMLLGDAHYSERHWRFVWQSLQA 61 Query: 68 VQKSLSQ-KGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEIN-EVRRDKLLEK 125 + + L+Q KG V D + + ++ +++ + +RD L + Sbjct: 62 INRDLAQSKGEVLIV-----TSDWQTCFARIAERYAIEAIYSHQEVGLACTFQRDLALAQ 116 Query: 126 RLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185 Q I P +++ A +++ + DL + Sbjct: 117 WCQQHDIVWHE-----FPYAAVIRGAQTRKNWDDHWQQVMRSPCCDPDLTRANWLKLDAA 171 Query: 186 GPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIP--AIQGTS 243 S+IP + M G A L F + Y P A S Sbjct: 172 ALGLRSDIPATW---QSKQAGMQTGGSDMAWATLEDFFVRRGREYYRSISSPSLARHACS 228 Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCM 303 ++SPYL+ G +S R+ + L + + + A S + L W + + Sbjct: 229 RMSPYLAWGNISLREMYQTLLKHWSVAGFRRSLIALS--SRLHWHCHFIQKFESECEMEF 286 Query: 304 GKPFIPWTEKIEWNKDS--HLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFL 361 + ++ + D+ L AW+ G+TG P++DA MR L G+++ R+R + S L Sbjct: 287 RCVNRAYDSLLQQSSDAPAAQLAAWQTGHTGIPLVDACMRCLIQTGYLNFRMRAMLVSVL 346 Query: 362 VKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQ 421 + VDWR G Y LD + + +Q G RI+NPT Q + D + Sbjct: 347 THHMNVDWRAGVTYLAQLFLDFEPGIHYPQFQMQ--AGVTGTNTIRIYNPTKQAQEHDSE 404 Query: 422 GTFIRHWLPELNNVPTQYIHAPH------SWLDKNDLSLNYPLPIVDHKKACHHTLNQYY 475 G FI W+PEL VP + P + + + L Y P++D + + ++ + Sbjct: 405 GHFIHKWVPELAQVPVPLLFEPWLMTPLEAQMYQVPLESPYLKPVMDLEASAKQARDRLW 464 Query: 476 AAKK 479 +K Sbjct: 465 QWQK 468 >gi|153830168|ref|ZP_01982835.1| cryptochrome Cry2 [Vibrio cholerae 623-39] gi|148874347|gb|EDL72482.1| cryptochrome Cry2 [Vibrio cholerae 623-39] Length = 504 Score = 266 bits (681), Expect = 5e-69, Method: Composition-based stats. Identities = 108/485 (22%), Positives = 190/485 (39%), Gaps = 32/485 (6%) Query: 8 SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67 ++LVWL+ DLR+TD+ L AA S + +++ P S R F++ SL Sbjct: 3 KINLVWLKRDLRLTDHAPLQAAL-TSGRPTLLLYLFEPMLLGDAHYSERHWRFVWQSLQA 61 Query: 68 VQKSLSQ-KGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEIN-EVRRDKLLEK 125 + + L+Q KG V D + + ++ +++ + +RD L + Sbjct: 62 INRDLAQSKGEVLIV-----TSDWQTCFARIAERYAIEAIYSHQEVGLACTFQRDLALAQ 116 Query: 126 RLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185 Q I P +++ A +++ + DL + Sbjct: 117 WCQQHDIVWHE-----FPYAAVIRGAQTRKNWDEHWQQVMRSPCCDPDLTRANWLKLDAA 171 Query: 186 GPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIP--AIQGTS 243 S+IP + M G A L F + Y P A S Sbjct: 172 TLGLRSDIPATW---QSKQAGMQTGGSDMAWATLEDFFARRGREYYRSISSPSLARHACS 228 Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSV-- 301 ++SPYL+ G +S R+ + L + + + A S + L W + + Sbjct: 229 RMSPYLAWGNISLREMYQTLLKHWSVAGFRRSLIALS--SRLHWHCHFIQKFESECEMEF 286 Query: 302 -CMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASF 360 C+ + + ++ + L AW+ G+TG P++DA MR L G+++ R+R + S Sbjct: 287 RCVNRAYDSLLQQSS-QAPAAQLAAWQTGHTGIPLVDACMRCLIQTGYLNFRMRAMLVSV 345 Query: 361 LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDP 420 L + VDWR G Y LD + + +Q G RI+NPT Q + D Sbjct: 346 LTHHMNVDWRAGVTYLAQLFLDFEPGIHYPQFQMQ--AGVTGTNTIRIYNPTKQAQEHDS 403 Query: 421 QGTFIRHWLPELNNVPTQYIHAPH------SWLDKNDLSLNYPLPIVDHKKACHHTLNQY 474 +G FI W+PEL VP + P + + + L Y P++D + + ++ Sbjct: 404 EGQFIHKWVPELAQVPVPLLFEPWLMTPLEAQMYQVPLESPYLKPVMDLEASAKQARDRL 463 Query: 475 YAAKK 479 + +K Sbjct: 464 WQWQK 468 >gi|262191004|ref|ZP_06049214.1| deoxyribodipyrimidine photolyase single-strand-specific [Vibrio cholerae CT 5369-93] gi|262033105|gb|EEY51633.1| deoxyribodipyrimidine photolyase single-strand-specific [Vibrio cholerae CT 5369-93] Length = 461 Score = 266 bits (680), Expect = 6e-69, Method: Composition-based stats. Identities = 112/432 (25%), Positives = 181/432 (41%), Gaps = 23/432 (5%) Query: 6 AMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFI---ATP---EQWRQHGISARQSH 59 + + L W NDLR+ DN L A D ++I ++ TP +Q + Sbjct: 2 SKKIGLYWFTNDLRVNDNPLLEQASQQVD-RLICLYCYPSITPFLARYAQQTQWGEAKKR 60 Query: 60 FIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRR 119 F+ +L + SLS G + + L Q +T ++ + +E + Sbjct: 61 FLNQTLADLDHSLSTLGQKLWVTPLLPY----QALRHLLTQVEITDIYVDAMAGSDERQT 116 Query: 120 DKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPV 179 + + I + S+L P + + +T FR V+ S P+ Sbjct: 117 IARIHQDFSSVHIHQQALHSLLSEP-QLPFALEALPSTFTQFR-----KQVETLSLSAPM 170 Query: 180 PAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNAL-HILRKFCKEKVYYYVEQRD-IP 237 R+ P+ D + F GEQ L H F Y E R+ + Sbjct: 171 GYPRVLPPIEQGWQLPLMDIVTEPNHSAFIGGEQAGLTHCQNYFSSMLPSRYKETRNGLD 230 Query: 238 AIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAF 297 + +++ SP+L++G +SP+ + L+ + + + EL+WRE++ Sbjct: 231 GMDYSTKFSPWLALGAVSPKTIYAMLQRY--EAVHGANDSTYWIFFELLWREYFYWYARR 288 Query: 298 YPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMIT 357 Y + I + + + + WK G T FPI++A MRQLN G+M NR R + Sbjct: 289 YGAKLFRFSGIGEKKPLT-SFYAQRFLQWKHGVTPFPIVNACMRQLNQTGYMSNRGRQLV 347 Query: 358 ASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKR 417 AS LV +L +DWR G YF +QL+D D+ SN G WQ+ A G D R FN Q Sbjct: 348 ASCLVHELGLDWRYGAAYFETQLVDYDVGSNWGNWQYLAGVGADPRG-SRQFNLEKQAHT 406 Query: 418 FDPQGTFIRHWL 429 +DP+G F+ W Sbjct: 407 YDPKGEFVAKWC 418 >gi|121727641|ref|ZP_01680744.1| RNA-binding cryptochrome Cry1 [Vibrio cholerae V52] gi|121630028|gb|EAX62435.1| RNA-binding cryptochrome Cry1 [Vibrio cholerae V52] Length = 462 Score = 266 bits (680), Expect = 6e-69, Method: Composition-based stats. Identities = 112/432 (25%), Positives = 183/432 (42%), Gaps = 22/432 (5%) Query: 6 AMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFI---ATP---EQWRQHGISARQSH 59 + + L W NDLR+ DN L A D ++I ++ TP +Q + Sbjct: 2 SKKIGLYWFTNDLRVNDNTLLEQASQQVD-RLICLYCYPSITPFLARYAQQTQWGEAKKR 60 Query: 60 FIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRR 119 F+ +L + SLS G + + L Q +T ++ + +E + Sbjct: 61 FLNQTLADLNHSLSTLGQKLWVTPLLPY----QALRHLLTQVEITDIYVDAVVGSDERQA 116 Query: 120 DKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPV 179 + + +I + S+L P + + +T FR + + L S P+ Sbjct: 117 IARIHQDFPSVLIHQQALHSLLSEP-QLPFALEALPSTFTQFR----KQVETLSLSSAPI 171 Query: 180 PAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNAL-HILRKFCKEKVYYYVEQRD-IP 237 R+ P+ D + F GEQ L H F Y E R+ + Sbjct: 172 GYPRVLPPIEQGWQLPLLDIVAEPNHSAFIGGEQAGLTHCQNYFSSMLPSCYKETRNGLD 231 Query: 238 AIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAF 297 + +++ SP+L++G +SP+ + L+ + + + EL+WRE++ Sbjct: 232 GMDYSTKFSPWLALGAVSPKTIYAMLQRY--EAVHGANDSTYWIFFELLWREYFYWYARR 289 Query: 298 YPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMIT 357 Y + I + + + + WK G T FPI++A MRQLN G+M NR R + Sbjct: 290 YGAKLFRFSGIGEKKPLT-SFYAQRFLQWKHGVTPFPIVNACMRQLNQTGYMSNRGRQLV 348 Query: 358 ASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKR 417 AS LV +L +DWR G YF +QL+D D+ SN G WQ+ A G D R FN Q Sbjct: 349 ASCLVHELGLDWRYGAAYFETQLVDYDVGSNWGNWQYLAGVGADPRG-SRQFNLEKQAHT 407 Query: 418 FDPQGTFIRHWL 429 +DP+G F+ W Sbjct: 408 YDPKGEFVAKWC 419 >gi|327484059|gb|AEA78466.1| Cryptochrome [Vibrio cholerae LMA3894-4] Length = 485 Score = 266 bits (680), Expect = 6e-69, Method: Composition-based stats. Identities = 109/484 (22%), Positives = 190/484 (39%), Gaps = 30/484 (6%) Query: 8 SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67 ++LVWL+ DLR+TD+ L AA S + +++ P S R F++ SL Sbjct: 3 KINLVWLKRDLRLTDHAPLQAAL-TSGRPTLLLYLFEPMLLGDAHYSERHWRFVWQSLQA 61 Query: 68 VQKSLSQ-KGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEIN-EVRRDKLLEK 125 + + L+Q KG V D + + ++ +++ + +RD L + Sbjct: 62 INRDLAQSKGEVLIV-----TSDWQTCFARIAERYAIEVIYSHQEVGLACTFQRDLALAQ 116 Query: 126 RLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185 Q I LP +++ A +++ + DL + Sbjct: 117 WCQQHDIVWHQ-----LPYAAVIRGAQTRKNWDEHWQQVMRSPCCDPDLTRANWLKLDAA 171 Query: 186 GPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIP--AIQGTS 243 S+IP + M G A L F + Y P A S Sbjct: 172 ALGLRSDIPATW---QSKQAGMQTGGSDMAWATLEDFFARRGREYYRSISSPSLARHACS 228 Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCM 303 ++SPYL+ G +S R+ + L + + + A S + L W + + Sbjct: 229 RMSPYLAWGNISLREMYQTLLKHWSVAGFRRSLIALS--SRLHWHCHFIQKFESECEMEF 286 Query: 304 GKPFIPWTEKIEWNKDS--HLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFL 361 + ++ + D+ L AW+ G+TG P++DA MR L G+++ R+R + S L Sbjct: 287 RCVNRAYDSLLQQSSDAPAAQLAAWQTGHTGIPLVDACMRCLIQTGYLNFRMRAMLVSVL 346 Query: 362 VKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQ 421 + VDWR G Y LD + + +Q G RI+NPT Q + D + Sbjct: 347 THHMNVDWRAGVTYLAQLFLDFEPGIHYPQFQMQ--AGVTGTNTIRIYNPTKQAQEHDSE 404 Query: 422 GTFIRHWLPELNNVPTQYIHAPH------SWLDKNDLSLNYPLPIVDHKKACHHTLNQYY 475 G FI W+PEL VP + P + + + L Y P++D + + ++ + Sbjct: 405 GQFIHKWVPELAQVPVPLLFEPWLMTPLEAQMYQVPLESPYLKPVMDLEASAKQARDRLW 464 Query: 476 AAKK 479 +K Sbjct: 465 QWQK 468 >gi|255066743|ref|ZP_05318598.1| deoxyribodipyrimidine photolyase [Neisseria sicca ATCC 29256] gi|255049071|gb|EET44535.1| deoxyribodipyrimidine photolyase [Neisseria sicca ATCC 29256] Length = 463 Score = 266 bits (679), Expect = 7e-69, Method: Composition-based stats. Identities = 131/464 (28%), Positives = 198/464 (42%), Gaps = 36/464 (7%) Query: 1 MKATTAMSVH-LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSH 59 + AM H LVW R +LRI DN AL AA V V++ Q + RQ Sbjct: 31 LSDDIAMQAHTLVWFRRNLRIRDNAALSAAVKRG-LPVAGVWV---AQGSSEIPNPRQDW 86 Query: 60 FIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRR 119 F Y + + SL+ +G+ + +E L + + V + + Y +E+ + Sbjct: 87 FHYQAAAALHGSLAARGVALY------AVNRVEELPALATRLNVQTVIADEAYTSSEIGQ 140 Query: 120 DKLLEKRL-QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLP 178 D + + L + V + +D + I+ Y + +++A + Q Sbjct: 141 DNRIWRILDEQGVAFERVNDRAIFAKADIMGSHGAPYTDFPHYKEAWLVLFRQRFGGQDV 200 Query: 179 VPAIRLTGPVTPSNIPRFFDY-PFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIP 237 T +P F + Q + GE A + F +E + +Y +D P Sbjct: 201 GGGRAEIFQTTSVEMPSFPAWNGQQDMVSAQRGGEDEAGKQWQHF-EENIGFYPIMKDFP 259 Query: 238 AIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAF 297 A +GTS+LS YLS G +SPR GA +WL+ LI R+FY+ L Sbjct: 260 ARKGTSRLSAYLSAGCISPRVLATEA----------SGQGADAWLDNLIQRDFYQQLAYH 309 Query: 298 YPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMIT 357 + P + L + W+QG TGFP+IDAAMR L + GW+H LR +T Sbjct: 310 RARIE------PESAAESAPFSDDLTERWRQGETGFPLIDAAMRSLKSSGWLHPALRSLT 363 Query: 358 ASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKR 417 A FL L G +F +Q D D A N G WQ AA + R + +R Sbjct: 364 AEFLCGVLHQPSEHGIVWFATQQTDFDPALNEGNWQTAARNA-----HRRSIDIIQTARR 418 Query: 418 FDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIV 461 DP GTF+R +PEL ++P +H P + D + YP P+V Sbjct: 419 LDPDGTFVRRHIPELAHLPVNLVHTPWLASSEID-AHGYPPPVV 461 >gi|258423340|ref|ZP_05686231.1| conserved hypothetical protein [Staphylococcus aureus A9635] gi|257846401|gb|EEV70424.1| conserved hypothetical protein [Staphylococcus aureus A9635] Length = 457 Score = 266 bits (679), Expect = 7e-69, Method: Composition-based stats. Identities = 135/479 (28%), Positives = 228/479 (47%), Gaps = 31/479 (6%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M++ ++ L R+ N L+ + + A + PE+ S ++ F +L Sbjct: 1 MAIAVL-LNRMFRMEHNP-LFEYIYQQKEDIDACYFIIPEE-DMSSASDLKAQFYRGTLK 57 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 + +SL + + + S + + S+C + ++++ + +L +R Sbjct: 58 RFYQSL-------HAEKLTPYVMSYDDIISFCKENNISEVVIAGDIMSYHLEEYDILHQR 110 Query: 127 L---QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIR 183 + R+ + +N + YKV+T F K L D+ + + Sbjct: 111 SLFNEARIAVTLIRGNHYFKASKTMNQQGEPYKVFTSFYKKWRPYLRHRDVYHYDLKSFE 170 Query: 184 LTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS 243 +P ++ F D F + I EQN + F + + Y RD TS Sbjct: 171 DFVIASPDDLV-FDDIAFGSS----QIIEQN---KWQHFLDQDIQNYESGRDYLPEVLTS 222 Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCM 303 QLS L+ G+L + +N L + + ++ +++ ELI+REFY LM YP Sbjct: 223 QLSVALAYGLLDIIEIFNDLLARY----DEDEANYEAFIRELIFREFYYVLMTQYPETSY 278 Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363 + F +I+W+++ AW +G TGFPIIDAA+ +L G+MHNR+RM+ + FL K Sbjct: 279 -QAFKSKYRQIKWSQNEADFNAWCEGQTGFPIIDAAIMELTQTGFMHNRMRMVVSQFLTK 337 Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423 DL +DW GE++F L+D D ASN GWQW+ASTG D+VPYFR+FNP Q +RFD + Sbjct: 338 DLFIDWTWGEKFFRKHLIDYDAASNIHGWQWSASTGTDAVPYFRMFNPIRQSERFDAKAL 397 Query: 424 FIRHWLPELNNVPTQYIH-----APHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477 +I+ +LP N + +Y+H + + +L +YP +VDH++ L + A Sbjct: 398 YIKTYLPIFNQIDAKYLHDTQRNESNLFEQGIELGRHYPRQMVDHQEKRTQVLAAFKAL 456 >gi|258454058|ref|ZP_05702030.1| deoxyribodipyrimidine photo-lyase type I [Staphylococcus aureus A5937] gi|257863923|gb|EEV86679.1| deoxyribodipyrimidine photo-lyase type I [Staphylococcus aureus A5937] Length = 457 Score = 266 bits (679), Expect = 7e-69, Method: Composition-based stats. Identities = 134/479 (27%), Positives = 229/479 (47%), Gaps = 31/479 (6%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M++ ++ L R+ N L+ + + A + PE+ S ++ F +L Sbjct: 1 MAIAVL-LNRMFRMEHNP-LFEYIYQQKEDIDACYFIIPEE-DMSSASDLKAQFYRGTLQ 57 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 + +SL + + + S + + S+C + ++++ + +L +R Sbjct: 58 RFYQSL-------HAEKLTPYVMSYDDIISFCKENNISEVVIAGDIMSYHLEEYDILHQR 110 Query: 127 L---QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIR 183 + R+ + +N + YKV+T F + L D+ + + Sbjct: 111 SLFNEARIAVTLIRGNHYFKASKTMNQQGEPYKVFTSFYRKWRSYLRHRDVYHYDLKSFE 170 Query: 184 LTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS 243 +P ++ F D F + + EQN + F + + Y RD TS Sbjct: 171 DFVIASPDDLV-FDDIAFGSS----QVIEQN---KWQHFLDQDIQNYESGRDYLPEVLTS 222 Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCM 303 QLS L+ G+L + +N L + + ++ +++ ELI+REFY LM YP Sbjct: 223 QLSVALAYGLLDIIEIFNDLLARY----DEDEANHEAFIRELIFREFYYVLMTQYPETSY 278 Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363 + F P +I+W+++ AW +G TGFPIIDAA+ +L G+MHNR+RM+ + FL K Sbjct: 279 -QAFKPKYRQIKWSQNEANFNAWCEGQTGFPIIDAAIMELTQTGFMHNRMRMVVSQFLTK 337 Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423 DL +DW GE++F L+D D ASN GWQW+ASTG D+VPYFR+FNP Q +RFD + Sbjct: 338 DLFIDWTWGEKFFRKHLIDYDAASNIHGWQWSASTGTDAVPYFRMFNPIRQSERFDAKAL 397 Query: 424 FIRHWLPELNNVPTQYIH-----APHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477 +I+ +LP N + +Y+H + + +L +YP +VDH++ L + A Sbjct: 398 YIKTYLPIFNQIDAKYLHDTQRNESNLFEQGIELGSHYPRQMVDHQEKRTQVLATFKAL 456 >gi|15923681|ref|NP_371215.1| putative deoxyribodipyrimidine photolyase [Staphylococcus aureus subsp. aureus Mu50] gi|15926368|ref|NP_373901.1| hypothetical protein SA0646 [Staphylococcus aureus subsp. aureus N315] gi|148267151|ref|YP_001246094.1| deoxyribodipyrimidine photo-lyase [Staphylococcus aureus subsp. aureus JH9] gi|150393199|ref|YP_001315874.1| deoxyribodipyrimidine photo-lyase [Staphylococcus aureus subsp. aureus JH1] gi|156979019|ref|YP_001441278.1| hypothetical protein SAHV_0688 [Staphylococcus aureus subsp. aureus Mu3] gi|253315330|ref|ZP_04838543.1| hypothetical protein SauraC_04087 [Staphylococcus aureus subsp. aureus str. CF-Marseille] gi|255005483|ref|ZP_05144084.2| hypothetical protein SauraM_03410 [Staphylococcus aureus subsp. aureus Mu50-omega] gi|257794988|ref|ZP_05643967.1| deoxyribodipyrimidine photo-lyase type I [Staphylococcus aureus A9781] gi|258418305|ref|ZP_05682570.1| deoxyribodipyrimidine photo-lyase type I [Staphylococcus aureus A9763] gi|258421602|ref|ZP_05684527.1| deoxyribodipyrimidine photo-lyase type I [Staphylococcus aureus A9719] gi|258430795|ref|ZP_05688507.1| deoxyribodipyrimidine photo-lyase [Staphylococcus aureus A9299] gi|258441712|ref|ZP_05690984.1| deoxyribodipyrimidine photo-lyase type I [Staphylococcus aureus A8115] gi|258445852|ref|ZP_05694029.1| deoxyribodipyrimidine photo-lyase type I [Staphylococcus aureus A6300] gi|258449657|ref|ZP_05697759.1| deoxyribodipyrimidine photo-lyase type I [Staphylococcus aureus A6224] gi|269202312|ref|YP_003281581.1| deoxyribodipyrimidine photolyase, putative [Staphylococcus aureus subsp. aureus ED98] gi|282894455|ref|ZP_06302684.1| deoxyribodipyrimidine photo-lyase [Staphylococcus aureus A8117] gi|282926553|ref|ZP_06334183.1| deoxyribodipyrimidine photo-lyase [Staphylococcus aureus A10102] gi|295406409|ref|ZP_06816215.1| deoxyribodipyrimidine photo-lyase [Staphylococcus aureus A8819] gi|296274755|ref|ZP_06857262.1| deoxyribodipyrimidine photo-lyase [Staphylococcus aureus subsp. aureus MR1] gi|297245136|ref|ZP_06929010.1| deoxyribodipyrimidine photo-lyase [Staphylococcus aureus A8796] gi|13700582|dbj|BAB41879.1| SA0646 [Staphylococcus aureus subsp. aureus N315] gi|14246460|dbj|BAB56853.1| putative deoxyribodipyrimidine photolyase [Staphylococcus aureus subsp. aureus Mu50] gi|147740220|gb|ABQ48518.1| Deoxyribodipyrimidine photo-lyase type I [Staphylococcus aureus subsp. aureus JH9] gi|149945651|gb|ABR51587.1| Deoxyribodipyrimidine photo-lyase [Staphylococcus aureus subsp. aureus JH1] gi|156721154|dbj|BAF77571.1| hypothetical protein [Staphylococcus aureus subsp. aureus Mu3] gi|257788960|gb|EEV27300.1| deoxyribodipyrimidine photo-lyase type I [Staphylococcus aureus A9781] gi|257839098|gb|EEV63577.1| deoxyribodipyrimidine photo-lyase type I [Staphylococcus aureus A9763] gi|257842528|gb|EEV66952.1| deoxyribodipyrimidine photo-lyase type I [Staphylococcus aureus A9719] gi|257849467|gb|EEV73437.1| deoxyribodipyrimidine photo-lyase [Staphylococcus aureus A9299] gi|257852181|gb|EEV76108.1| deoxyribodipyrimidine photo-lyase type I [Staphylococcus aureus A8115] gi|257855428|gb|EEV78366.1| deoxyribodipyrimidine photo-lyase type I [Staphylococcus aureus A6300] gi|257857165|gb|EEV80064.1| deoxyribodipyrimidine photo-lyase type I [Staphylococcus aureus A6224] gi|262074602|gb|ACY10575.1| deoxyribodipyrimidine photolyase, putative [Staphylococcus aureus subsp. aureus ED98] gi|282591446|gb|EFB96518.1| deoxyribodipyrimidine photo-lyase [Staphylococcus aureus A10102] gi|282763168|gb|EFC03299.1| deoxyribodipyrimidine photo-lyase [Staphylococcus aureus A8117] gi|294968554|gb|EFG44577.1| deoxyribodipyrimidine photo-lyase [Staphylococcus aureus A8819] gi|297177807|gb|EFH37056.1| deoxyribodipyrimidine photo-lyase [Staphylococcus aureus A8796] gi|312829185|emb|CBX34027.1| FAD binding domain of DNA photolyase family protein [Staphylococcus aureus subsp. aureus ECT-R 2] gi|315129365|gb|EFT85358.1| hypothetical protein CGSSa03_00150 [Staphylococcus aureus subsp. aureus CGS03] gi|329724512|gb|EGG61019.1| deoxyribodipyrimidine photo-lyase family protein [Staphylococcus aureus subsp. aureus 21172] Length = 457 Score = 266 bits (679), Expect = 7e-69, Method: Composition-based stats. Identities = 134/479 (27%), Positives = 229/479 (47%), Gaps = 31/479 (6%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M++ ++ L R+ N L+ + + A + PE+ S ++ F +L Sbjct: 1 MAIAVL-LNRMFRMEHNP-LFEYIYQQKEDIDACYFIIPEE-DMSSASDLKAQFYRGTLQ 57 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 + +SL + + + S + + S+C + ++++ + +L +R Sbjct: 58 RFYQSL-------HAEKLTPYVMSYDDIISFCKENNISEVVIAGDIMSYHLEEYDILHQR 110 Query: 127 L---QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIR 183 + R+ + +N + YKV+T F + L D+ + + Sbjct: 111 SLFNEARIAVTLIRGNHYFKASKTMNQQGEPYKVFTSFYRKWRPYLRHRDVYHYDLKSFE 170 Query: 184 LTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS 243 +P ++ F D F + + EQN + F + + Y RD TS Sbjct: 171 DFVIASPDDLV-FDDIAFGSS----QVIEQN---KWQHFLDQDIQNYESGRDYLPEVLTS 222 Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCM 303 QLS L+ G+L + +N L + + ++ +++ ELI+REFY LM YP Sbjct: 223 QLSVALAYGLLDIIEIFNDLLARY----DEDEANHEAFIRELIFREFYYVLMTQYPETSY 278 Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363 + F P +I+W+++ AW +G TGFPIIDAA+ +L G+MHNR+RM+ + FL K Sbjct: 279 -QAFKPKYRQIKWSQNEANFNAWCEGQTGFPIIDAAIMELTQTGFMHNRMRMVVSQFLTK 337 Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423 DL +DW GE++F L+D D ASN GWQW+ASTG D+VPYFR+FNP Q +RFD + Sbjct: 338 DLFIDWTWGEKFFRKHLIDYDAASNIHGWQWSASTGTDAVPYFRMFNPIRQSERFDAKAL 397 Query: 424 FIRHWLPELNNVPTQYIH-----APHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477 +I+ +LP N + +Y+H + + +L +YP +VDH++ L + A Sbjct: 398 YIKTYLPIFNQIDAKYLHDTQRNESNLFEQGIELGSHYPRQMVDHQEKRTQVLATFKAL 456 >gi|254489917|ref|ZP_05103112.1| cryptochrome, DASH family [Methylophaga thiooxidans DMS010] gi|224465002|gb|EEF81256.1| cryptochrome, DASH family [Methylophaga thiooxydans DMS010] Length = 441 Score = 266 bits (679), Expect = 7e-69, Method: Composition-based stats. Identities = 109/428 (25%), Positives = 185/428 (43%), Gaps = 21/428 (4%) Query: 8 SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIAT-----PEQWRQHGISARQSHFIY 62 L W NDLR+ DN AL A N D ++I +F P + + ++ F+ Sbjct: 3 KTGLFWFNNDLRVHDNPALLEASLNCD-RLICLFCYDTFWDKPTGFNAKPLGDKRRQFLL 61 Query: 63 ASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKL 122 SL +Q +L +G + D + + + V ++ + + E R+ + Sbjct: 62 ESLNDLQHTLEARGQQLIVMKG----DPVAIISELLSKYHVNHVYRSYHVGVYENRQWQH 117 Query: 123 LEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAI 182 L RV S+ L + + ++ FRK + + ++ A+ Sbjct: 118 LRADFP-RVQFDSYWTHSLFQQRQLPFDLTSLPDTFSQFRKIVESLPIDKPVQMPKTLAV 176 Query: 183 RLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILR-KFCKEKVYYYVEQR-DIPAIQ 240 PV+ + ++ F GE+ A+ + F + Y R D+ Sbjct: 177 ----PVSELHEDTLPLPTYRNSQDHFTGGEKAAIEHMEAYFSSDYPAQYKLLRNDLDHWS 232 Query: 241 GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPS 300 +++ S +L+ G LS ++ +L++ + + EL+WRE++ AF Sbjct: 233 HSTKFSAWLANGSLSVKRLLQQLRQ--FEKTHTANESTYWIFFELLWREYF-QWYAFRYR 289 Query: 301 VCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASF 360 + +P +KI Q W G T +P+++A M+QLN G+M NR R I AS Sbjct: 290 HKLFRPQGLGKKKITCCFYPERYQKWAHGNTPYPLVNALMKQLNDTGYMSNRGRQIVASC 349 Query: 361 LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDP 420 + +L +DWR G YF QL+D D+A+N G WQ+ A G D R FN Q +++DP Sbjct: 350 FINELELDWRFGAAYFEQQLIDYDVAANWGNWQYIAGVGADPRG-GRHFNIDKQQRQYDP 408 Query: 421 QGTFIRHW 428 Q TFI+ W Sbjct: 409 QQTFIQKW 416 >gi|254286160|ref|ZP_04961120.1| cryptochrome Cry2 [Vibrio cholerae AM-19226] gi|150423829|gb|EDN15770.1| cryptochrome Cry2 [Vibrio cholerae AM-19226] Length = 504 Score = 265 bits (678), Expect = 9e-69, Method: Composition-based stats. Identities = 108/485 (22%), Positives = 190/485 (39%), Gaps = 32/485 (6%) Query: 8 SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67 ++LVWL+ DLR+TD+ L AA S + +++ P S R F++ SL Sbjct: 3 KINLVWLKRDLRLTDHAPLQAAL-TSGRPTLLLYLFEPMLLGDAHYSERHWRFVWQSLQA 61 Query: 68 VQKSLSQ-KGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEIN-EVRRDKLLEK 125 + + L+Q KG V D + + ++ +++ + +RD L + Sbjct: 62 INRDLAQSKGEVLIV-----TSDWQTCFSRIAERHAIEAIYSHQEVGLACTFQRDLALAQ 116 Query: 126 RLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185 Q I P +++ A +++ + DL + Sbjct: 117 WCQQHDIVWHE-----FPYAAVIRGAQTRKNWDEHWQQVMRSPCCDPDLTRANWLKLDAA 171 Query: 186 GPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIP--AIQGTS 243 S+IP + M G A L F + Y P A S Sbjct: 172 TLGLRSDIPATW---QSKQAGMQTGGSDMAWTTLEDFFARRGRDYYRSISSPSLARHACS 228 Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSV-- 301 ++SPYL+ G +S R+ + L + + + A S + L W + + Sbjct: 229 RMSPYLAWGNISLREMYQTLLKHWSVAGFRRSLIALS--SRLHWHCHFIQKFESECEMEF 286 Query: 302 -CMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASF 360 C+ + + ++ + L AW+ G+TG P++DA MR L G+++ R+R + S Sbjct: 287 RCVNRAYDSLLQQSS-QATTAQLAAWQTGHTGIPLVDACMRCLIQTGYLNFRMRAMLVSV 345 Query: 361 LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDP 420 L + VDWR G Y LD + + +Q G RI+NPT Q + D Sbjct: 346 LTHHMNVDWRAGVTYLAQLFLDFEPGIHYPQFQMQ--AGVTGTNTIRIYNPTKQAQEHDS 403 Query: 421 QGTFIRHWLPELNNVPTQYIHAPH------SWLDKNDLSLNYPLPIVDHKKACHHTLNQY 474 +G FI W+PEL VP + P + + + L Y P++D + + ++ Sbjct: 404 EGLFIHKWVPELAQVPVPLLFEPWLMTPFEAQMYQVPLESPYLKPVMDLEASAKQARDRL 463 Query: 475 YAAKK 479 + +K Sbjct: 464 WQWQK 468 >gi|15641816|ref|NP_231448.1| deoxyribodipyrimidine photolyase [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121585836|ref|ZP_01675630.1| RNA-binding cryptochrome Cry1 [Vibrio cholerae 2740-80] gi|147674040|ref|YP_001217353.1| RNA-binding cryptochrome Cry1 [Vibrio cholerae O395] gi|153817785|ref|ZP_01970452.1| cryptochrome, DASH family [Vibrio cholerae NCTC 8457] gi|153821143|ref|ZP_01973810.1| RNA-binding cryptochrome Cry1 [Vibrio cholerae B33] gi|227081943|ref|YP_002810494.1| deoxyribodipyrimidine photolyase [Vibrio cholerae M66-2] gi|229508087|ref|ZP_04397592.1| deoxyribodipyrimidine photolyase single-strand-specific [Vibrio cholerae BX 330286] gi|229511674|ref|ZP_04401153.1| deoxyribodipyrimidine photolyase single-strand-specific [Vibrio cholerae B33] gi|229518813|ref|ZP_04408256.1| deoxyribodipyrimidine photolyase single-strand-specific [Vibrio cholerae RC9] gi|229607648|ref|YP_002878296.1| deoxyribodipyrimidine photolyase single-strand-specific [Vibrio cholerae MJ-1236] gi|254848903|ref|ZP_05238253.1| cryptochrome DASH [Vibrio cholerae MO10] gi|255745421|ref|ZP_05419370.1| deoxyribodipyrimidine photolyase single-strand-specific [Vibrio cholera CIRS 101] gi|262169806|ref|ZP_06037497.1| deoxyribodipyrimidine photolyase single-strand-specific [Vibrio cholerae RC27] gi|81858080|sp|Q9KR33|CRYD_VIBCH RecName: Full=Cryptochrome DASH gi|9656339|gb|AAF94962.1| deoxyribodipyrimidine photolyase [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121549974|gb|EAX59992.1| RNA-binding cryptochrome Cry1 [Vibrio cholerae 2740-80] gi|126511605|gb|EAZ74199.1| cryptochrome, DASH family [Vibrio cholerae NCTC 8457] gi|126521339|gb|EAZ78562.1| RNA-binding cryptochrome Cry1 [Vibrio cholerae B33] gi|146315923|gb|ABQ20462.1| RNA-binding cryptochrome Cry1 [Vibrio cholerae O395] gi|227009831|gb|ACP06043.1| deoxyribodipyrimidine photolyase [Vibrio cholerae M66-2] gi|227013713|gb|ACP09923.1| deoxyribodipyrimidine photolyase [Vibrio cholerae O395] gi|229343502|gb|EEO08477.1| deoxyribodipyrimidine photolyase single-strand-specific [Vibrio cholerae RC9] gi|229351639|gb|EEO16580.1| deoxyribodipyrimidine photolyase single-strand-specific [Vibrio cholerae B33] gi|229355592|gb|EEO20513.1| deoxyribodipyrimidine photolyase single-strand-specific [Vibrio cholerae BX 330286] gi|229370303|gb|ACQ60726.1| deoxyribodipyrimidine photolyase single-strand-specific [Vibrio cholerae MJ-1236] gi|254844608|gb|EET23022.1| cryptochrome DASH [Vibrio cholerae MO10] gi|255737251|gb|EET92647.1| deoxyribodipyrimidine photolyase single-strand-specific [Vibrio cholera CIRS 101] gi|262022040|gb|EEY40750.1| deoxyribodipyrimidine photolyase single-strand-specific [Vibrio cholerae RC27] Length = 461 Score = 265 bits (678), Expect = 9e-69, Method: Composition-based stats. Identities = 111/432 (25%), Positives = 180/432 (41%), Gaps = 23/432 (5%) Query: 6 AMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFI---ATP---EQWRQHGISARQSH 59 + + L W NDLR+ DN L A D ++I ++ TP +Q + Sbjct: 2 SKKIGLYWFTNDLRVNDNPLLEQASQQVD-RLICLYCYPSITPFLARYAQQTQWGEAKKR 60 Query: 60 FIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRR 119 F+ +L + SLS G + + L Q +T ++ + +E + Sbjct: 61 FLNQTLADLDHSLSTLGQKLWVTPLLPY----QALRHLLTQVEITDIYVDAVAGSDERQA 116 Query: 120 DKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPV 179 + + I + S+L P + + +T FR V+ S P+ Sbjct: 117 IARIHQDFSSVHIHQQALHSLLSEP-QLPFALEALPSTFTQFR-----KQVETISLSAPM 170 Query: 180 PAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNAL-HILRKFCKEKVYYYVEQRD-IP 237 + P+ D + F GEQ L H F Y E R+ + Sbjct: 171 GYPHVLPPIEQGWQLPLMDIVTEPNHSAFVGGEQAGLTHCQNYFSSLLPSRYKETRNGLD 230 Query: 238 AIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAF 297 + +++ SP+L++G +SP+ + L+ + + + EL+WRE++ Sbjct: 231 GMDYSTKFSPWLALGAVSPKTIYAMLQRY--EAVHGANDSTYWIFFELLWREYFYWYARR 288 Query: 298 YPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMIT 357 Y + I + + + + WK G T FPI++A MRQLN G+M NR R + Sbjct: 289 YGAKLFRFSGIGEKKPLT-SFYAQRFLQWKHGETPFPIVNACMRQLNQTGYMSNRGRQLV 347 Query: 358 ASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKR 417 AS LV +L +DWR G YF +QL+D D+ SN G WQ+ A G D R FN Q Sbjct: 348 ASCLVHELGLDWRYGAAYFETQLVDYDVGSNWGNWQYLAGVGADPRG-SRQFNLEKQAHT 406 Query: 418 FDPQGTFIRHWL 429 +DP+G F+ W Sbjct: 407 YDPKGEFVAKWC 418 >gi|153826234|ref|ZP_01978901.1| RNA-binding cryptochrome Cry1 [Vibrio cholerae MZO-2] gi|149739999|gb|EDM54174.1| RNA-binding cryptochrome Cry1 [Vibrio cholerae MZO-2] Length = 461 Score = 265 bits (678), Expect = 1e-68, Method: Composition-based stats. Identities = 112/432 (25%), Positives = 182/432 (42%), Gaps = 23/432 (5%) Query: 6 AMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFI---ATP---EQWRQHGISARQSH 59 + + L W NDLR+ DN L A D ++I ++ TP +Q + Sbjct: 2 SKKIGLYWFTNDLRVNDNPLLEQASQQVD-RLICLYCYPSITPFLARYAQQTQWGEAKKR 60 Query: 60 FIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRR 119 F+ +L + SLS G + + L Q +T ++ + +E + Sbjct: 61 FLNQTLADLDHSLSTLGQKLWVTPLLPY----QALRHLLTQVEITDIYVDAMAGSDERQA 116 Query: 120 DKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPV 179 + + I + S+L P + + +T FR V+ S P+ Sbjct: 117 IARIHQDFSSVHIHQQALHSLLSEP-QLPFALEALPSTFTQFR-----KQVETLSLSAPM 170 Query: 180 PAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNAL-HILRKFCKEKVYYYVEQRD-IP 237 R+ P+ D + F GEQ L H F Y E R+ + Sbjct: 171 GYPRVLPPIEQGWQLPLLDIVTEPNHSAFVGGEQAGLTHCQNYFSSMLPSRYKETRNGLD 230 Query: 238 AIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAF 297 + +++ SP+L++G +SP+ + L+ + + + EL+WRE++ Sbjct: 231 GMDYSTKFSPWLALGAVSPKTIYAMLQRY--EAVHGANDSTYWIFFELLWREYFYWYARR 288 Query: 298 YPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMIT 357 Y + I +K+ + + WK G T FPI++A MRQLN G+M NR R + Sbjct: 289 YGAKLFRFSGIGE-KKLLTSFYAQRFLQWKHGETPFPIVNACMRQLNQTGYMSNRGRQLV 347 Query: 358 ASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKR 417 AS LV +L +DWR G YF +QL+D D+ SN G WQ+ A G + R FN Q Sbjct: 348 ASCLVHELGLDWRYGAAYFETQLMDYDVGSNWGNWQYLAGVGANPRG-SRQFNLAKQAHT 406 Query: 418 FDPQGTFIRHWL 429 +DP+G F+ W Sbjct: 407 YDPKGEFVAKWC 418 >gi|71297422|gb|AAH35161.1| CRY2 protein [Homo sapiens] Length = 461 Score = 265 bits (678), Expect = 1e-68, Method: Composition-based stats. Identities = 100/380 (26%), Positives = 157/380 (41%), Gaps = 25/380 (6%) Query: 123 LEKRLQHRVICKSFDDSVLLPPGSILNHALQ-MYKVYTPFRKALIQNLVQADLRSL---- 177 ++ + V + + L I+ Q Y F+ + + + L Sbjct: 1 MKMAKEAGVEVVTENSHTLYDLDRIIELNGQKPPLTYKRFQAIISRMELPKKPVGLVTSQ 60 Query: 178 ---PVPAIRLTGPVTPSNIPRFFDYPF--QAIDPM-FPIGEQNALHILRKFCKEKVYYYV 231 A +P + F + + P + GE AL L K + K + Sbjct: 61 QMESCRAEIQENHDETYGVPSLEELGFPTEGLGPAVWQGGETEALARLDKHLERKAWVAN 120 Query: 232 EQRDIPAIQGT----SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIW 287 +R + LSPYL G LS R + RL + + + + + S +L+W Sbjct: 121 YERPRMNANSLLASPTGLSPYLRFGCLSCRLFYYRLWDLYKKVK-RNSTPPLSLFGQLLW 179 Query: 288 REFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIG 347 REF+ P + P +I W+++ L W +G TGFP IDA M QL G Sbjct: 180 REFFYTAATNNPRFDRMEG-NPICIQIPWDRNPEALAKWAEGKTGFPWIDAIMTQLRQEG 238 Query: 348 WMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYF 406 W+H+ R A FL + DL V W G F LLD D + N G W W S G +F Sbjct: 239 WIHHLARHAVACFLTRGDLWVSWESGVRVFDELLLDADFSVNAGSWMW-LSCGAFFQQFF 297 Query: 407 RIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLD------KNDLSLNYPLPI 460 + P G+R DP G +IR +LP+L P++YI+ P + + K + ++YP PI Sbjct: 298 HCYCPVGFGRRTDPSGDYIRRYLPKLKAFPSRYIYEPWNAPESIQKAAKCIIGVDYPRPI 357 Query: 461 VDHKKACHHTLNQYYAAKKQ 480 V+H + + + +Q Sbjct: 358 VNHAETSRLNIERMKQIYQQ 377 >gi|254285235|ref|ZP_04960200.1| RNA-binding cryptochrome Cry1 [Vibrio cholerae AM-19226] gi|150424507|gb|EDN16443.1| RNA-binding cryptochrome Cry1 [Vibrio cholerae AM-19226] Length = 461 Score = 265 bits (678), Expect = 1e-68, Method: Composition-based stats. Identities = 112/432 (25%), Positives = 181/432 (41%), Gaps = 23/432 (5%) Query: 6 AMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFI---ATP---EQWRQHGISARQSH 59 + + L W NDLR+ DN L A D ++I ++ TP +Q + Sbjct: 2 SKKIGLYWFTNDLRVNDNPLLEQASQQVD-RLICLYCYPSITPFLARYAQQTQWGEAKKR 60 Query: 60 FIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRR 119 F+ +L + SLS G + + L Q +T ++ + +E + Sbjct: 61 FLNQTLADLDHSLSTLGQKLWVTPLLPY----QALRHLLTQVEITDIYVDAVAGSDERQA 116 Query: 120 DKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPV 179 + + I + S+L P + + +T FR V+ S P+ Sbjct: 117 IARIHQDFSSVHIHQQALHSLLSEP-QLPFALEALPSTFTQFR-----KQVETLSLSAPM 170 Query: 180 PAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNAL-HILRKFCKEKVYYYVEQRD-IP 237 R+ P+ D + F GEQ L H F Y E R+ + Sbjct: 171 GYPRVLPPIEQGWQLPLMDIVTEPNHSAFVGGEQAGLTHCQHYFSSMLPSRYKETRNGLD 230 Query: 238 AIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAF 297 + +++ SP+L++G +SP+ + L+ + + + EL+WRE++ Sbjct: 231 GMDYSTKFSPWLALGAVSPKTIYAMLQRY--EAVHGANDSTYWIFFELLWREYFYWYARR 288 Query: 298 YPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMIT 357 Y + I + + + + WK G T FPI++A MRQLN G+M NR R + Sbjct: 289 YGAKLFRFSGIGEKKPLT-SFYAQRFLQWKHGVTPFPIVNACMRQLNQTGYMSNRGRQLV 347 Query: 358 ASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKR 417 AS LV +L +DWR G YF +QL+D D+ SN G WQ+ A G D R FN Q Sbjct: 348 ASCLVHELGLDWRYGAAYFETQLVDYDVGSNWGNWQYLAGVGADPRG-SRQFNLEKQAHT 406 Query: 418 FDPQGTFIRHWL 429 +DP+G F+ W Sbjct: 407 YDPKGEFVAKWC 418 >gi|72012168|ref|XP_786331.1| PREDICTED: similar to cryptochrome [Strongylocentrotus purpuratus] gi|115937430|ref|XP_001183029.1| PREDICTED: similar to cryptochrome [Strongylocentrotus purpuratus] Length = 450 Score = 265 bits (678), Expect = 1e-68, Method: Composition-based stats. Identities = 104/450 (23%), Positives = 172/450 (38%), Gaps = 39/450 (8%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 + W R+ LR+ DN AL VFI E + F++ L+ + + Sbjct: 7 IHWFRHGLRLHDNPALLEGMTLGKEF-YPVFIFDNEVAGTKTSGYNRWRFLHDCLVDLDE 65 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH- 129 L G L+ V L + E RD+ ++ + Sbjct: 66 QLKAAGGRLFVFHGDPCL----IFKEMFLEWGVRYLTFESDPEPIWTERDRRVKALCKEM 121 Query: 130 RVICKSFDDSVLLPPGSIL-NHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188 +V C L P I+ + Y+ F + + + + R +P P + Sbjct: 122 KVECIERVSHTLWNPDIIIEKNGGTPPITYSMFMECVTE--IGHPPRPMPDPILTKVNMK 179 Query: 189 TPSNIPRFFDYPF-----------QAIDPMFPIGEQNALHILRKFCKEKVYYYV-----E 232 PS+ P + ++ GE AL + R + + Sbjct: 180 IPSDFEERCALPSLEVMGVNMECTEQEKKVWKGGETRALELFRVRILHEEEAFKGGYCLP 239 Query: 233 QRDIPAIQGTSQ-LSPYLSIGVLSPRQCWNRLKEEFVDLLIK---------PKSGAFSWL 282 + +P + GT + LS YL G LS R+ + ++ + + ++ + Sbjct: 240 NQYMPDLLGTPKSLSAYLRFGCLSVRRFYWKIHDTYSEVRSVSLFLVYRRLEEVSPSHLT 299 Query: 283 NELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQ 342 ++IWRE++ + K P IEW +D L+AW G TG+P IDA M+Q Sbjct: 300 AQVIWREYFYTMSVGNIHFNKMKE-NPICLNIEWKEDDEKLKAWTDGRTGYPWIDACMKQ 358 Query: 343 LNTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGND 401 L GW+H R TA FL + DL + W G + F LLD D + G W W +S+ + Sbjct: 359 LKYEGWIHQVGRHATACFLTRGDLWISWEDGLQVFDKYLLDADWSICAGNWMWISSSAFE 418 Query: 402 S-VPYFRIFNPTIQGKRFDPQGTFIRHWLP 430 + F P G+R DP G ++R ++P Sbjct: 419 KFLQCPNCFCPVRYGRRMDPTGEYVR-FVP 447 >gi|318078311|ref|ZP_07985643.1| deoxyribodipyrimidine photo-lyase [Streptomyces sp. SA3_actF] Length = 487 Score = 265 bits (678), Expect = 1e-68, Method: Composition-based stats. Identities = 108/401 (26%), Positives = 185/401 (46%), Gaps = 19/401 (4%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M +V +DLR+ D+ L AA ++ +V+ +F+ P + +A ++ F+ L Sbjct: 1 MKASIVLYTSDLRLHDHPPLRAAVREAE-EVVPLFVRDPGIKKVGFHAANRAAFLADCLG 59 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 + L ++G D + + ++ R L Sbjct: 60 DLDAGLRERGGRLVVR----AGDPAQVVRELVGSTGAERVHVAAGVSAYARNRADRLRAA 115 Query: 127 LQHRVICKSFDDSVL--LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL 184 L+ ++V+ LPPG ++ + + V+TP+ + ++ L + + + Sbjct: 116 LEGTGAELVEHEAVITALPPGEVVPGSKDHFAVFTPYHRQWSAQHLREPLGAP--RKLSV 173 Query: 185 TGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244 V +PR D + GE+ L + ++ + Y + D A GTS+ Sbjct: 174 PSKVRSDGVPRREDVE-GISPGLARGGEREGRAKLASWRRDGISRYEDLHDDLAGDGTSR 232 Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304 LSPYL G LS +C +R +GA +++ +L WR+F+ ++A P+ Sbjct: 233 LSPYLHFGALSAAECVHR-------ARAAGGAGADAFVRQLCWRDFHHQVLAARPAAA-H 284 Query: 305 KPFIPWTEKIEWNKDSHL-LQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363 + + P + D+ AW++G TG+P++DAAMRQL GWMHNR R++ ASFL K Sbjct: 285 EDYRPRGDHWRTGSDAEHEAAAWREGRTGYPVVDAAMRQLAHEGWMHNRGRLLAASFLTK 344 Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVP 404 L +DWR+G +F+ L+DGDL +N WQW A TG D+ P Sbjct: 345 TLYLDWRLGAAHFLDLLVDGDLVNNQMNWQWVAGTGTDTRP 385 >gi|167919769|ref|ZP_02506860.1| deoxyribodipyrimidine photolyase [Burkholderia pseudomallei BCC215] Length = 299 Score = 265 bits (677), Expect = 1e-68, Method: Composition-based stats. Identities = 113/282 (40%), Positives = 154/282 (54%), Gaps = 8/282 (2%) Query: 203 AIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNR 262 + + GE A LR F ++ Y +RD P I TS+LSPY+ G LS RQ W+ Sbjct: 20 GLRDAWRFGEDAAHRRLRAFVDSRLGGYAAERDRPGIASTSRLSPYVRFGNLSARQLWHA 79 Query: 263 LKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHL 322 + + ++ +L+EL WREF + +P + + + + W D Sbjct: 80 AADAYAHGAAT-QADLDKFLSELGWREFGWTQLHHFPDLPR-RNLRHTLDGMPWRDDPAA 137 Query: 323 LQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLD 382 L AW++G TG+P +DA MR+L GWMHNR+RM+ ASFLVK LL+DWR GE +F L+D Sbjct: 138 LAAWRRGATGYPFVDAGMRELWATGWMHNRVRMVCASFLVKHLLIDWRAGEAWFWDTLVD 197 Query: 383 GDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHA 442 D ASN WQW A G D+ PYFRIFNP QG++FDP G ++R W+PEL +P IH Sbjct: 198 ADAASNAANWQWVAGCGADAAPYFRIFNPVAQGRKFDPDGAYVRRWVPELAGLPPATIHE 257 Query: 443 PHSWLDKN------DLSLNYPLPIVDHKKACHHTLNQYYAAK 478 P + L YPLPIV H A L+ + A + Sbjct: 258 PWAAPGAQLAAAGVRLGETYPLPIVAHDAARRRALDAFGAIR 299 >gi|285816392|gb|ADC36879.1| Deoxyribodipyrimidine photolyase [Staphylococcus aureus 04-02981] Length = 457 Score = 265 bits (677), Expect = 1e-68, Method: Composition-based stats. Identities = 134/479 (27%), Positives = 229/479 (47%), Gaps = 31/479 (6%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M++ ++ L R+ N L+ + + A + PE+ S ++ F +L Sbjct: 1 MAIAVL-LNRMFRMEHNP-LFEYIYQQKEDIDACYFIIPEE-DMSSASDLKAQFYRGTLQ 57 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 + +SL + + + S + + S+C + ++++ + +L +R Sbjct: 58 RFYQSL-------HAEKLTPYVMSYDDIISFCKENNISEVVIAGDIMSYHLEEYDILHQR 110 Query: 127 L---QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIR 183 + R+ + +N + YKV+T F + L D+ + + Sbjct: 111 SLFNEARIAVTLIRGNHYFKASKTMNQQGEPYKVFTSFYRKWRPYLRHRDVYHYDLKSFE 170 Query: 184 LTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS 243 +P ++ F D F + + EQN + F + + Y RD TS Sbjct: 171 DFVIASPDDLV-FDDIVFGSS----QVIEQN---KWQHFLDQDIQNYESGRDYLPEVLTS 222 Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCM 303 QLS L+ G+L + +N L + + ++ +++ ELI+REFY LM YP Sbjct: 223 QLSVALAYGLLDIIEIFNDLLARY----DEDEANHEAFIRELIFREFYYVLMTQYPETSY 278 Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363 + F P +I+W+++ AW +G TGFPIIDAA+ +L G+MHNR+RM+ + FL K Sbjct: 279 -QAFKPKYRQIKWSQNEANFNAWCEGQTGFPIIDAAIMELTQTGFMHNRMRMVVSQFLTK 337 Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423 DL +DW GE++F L+D D ASN GWQW+ASTG D+VPYFR+FNP Q +RFD + Sbjct: 338 DLFIDWTWGEKFFRKHLIDYDAASNIHGWQWSASTGTDAVPYFRMFNPIRQSERFDAKAL 397 Query: 424 FIRHWLPELNNVPTQYIH-----APHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477 +I+ +LP N + +Y+H + + +L +YP +VDH++ L + A Sbjct: 398 YIKTYLPIFNQIDAKYLHDTQRNESNLFEQGIELGSHYPRQMVDHQEKRTQVLATFKAL 456 >gi|262147205|ref|ZP_06028009.1| deoxyribodipyrimidine photolyase single-strand-specific [Vibrio cholerae INDRE 91/1] gi|262031362|gb|EEY49972.1| deoxyribodipyrimidine photolyase single-strand-specific [Vibrio cholerae INDRE 91/1] Length = 461 Score = 265 bits (677), Expect = 1e-68, Method: Composition-based stats. Identities = 112/432 (25%), Positives = 181/432 (41%), Gaps = 23/432 (5%) Query: 6 AMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFI---ATP---EQWRQHGISARQSH 59 + + L W NDLR+ DN L A D ++I ++ TP +Q S + Sbjct: 2 SKKIGLYWFTNDLRVNDNPLLEQASQQVD-RLICLYCYPSITPFLARYAQQTQWSEAKKR 60 Query: 60 FIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRR 119 F+ +L + SLS G + + L Q +T ++ + +E + Sbjct: 61 FLNQTLADLDHSLSTLGQKLWVTPLLPY----QALRHLLTQVEITDIYVDAVAGSDERQA 116 Query: 120 DKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPV 179 + + I + S+L P + + +T FR V+ S P+ Sbjct: 117 IARIHQDFSSVHIHQQALHSLLSEP-QLPFALEALPSTFTQFR-----KQVETISLSAPM 170 Query: 180 PAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNAL-HILRKFCKEKVYYYVEQRD-IP 237 + P+ D + F GEQ L H F Y E R+ + Sbjct: 171 GYPHVLPPIEQGWQLPLMDIVTEPNHSAFVGGEQAGLTHCQNYFSSLLPSRYKETRNGLD 230 Query: 238 AIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAF 297 + +++ SP+L++G +SP+ + L+ + + + EL+WRE++ Sbjct: 231 GMDYSTKFSPWLALGAVSPKTIYAMLQRY--EAVHGANDSTYWIFFELLWREYFYWYARR 288 Query: 298 YPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMIT 357 Y + I + + + + WK G T FPI++A MRQLN G+M NR R + Sbjct: 289 YGAKLFRFSGIGEKKPLT-SFYAQRFLQWKHGETPFPIVNACMRQLNQTGYMSNRGRQLV 347 Query: 358 ASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKR 417 AS LV +L +DWR G YF +QL+D D+ SN G WQ+ A G D R FN Q Sbjct: 348 ASCLVHELGLDWRYGAAYFETQLVDYDVGSNWGNWQYLAGVGADPRG-SRQFNLEKQAHT 406 Query: 418 FDPQGTFIRHWL 429 +DP+G F+ W Sbjct: 407 YDPKGEFVAKWC 418 >gi|261211882|ref|ZP_05926169.1| deoxyribodipyrimidine photolyase single-strand-specific [Vibrio sp. RC341] gi|260839232|gb|EEX65864.1| deoxyribodipyrimidine photolyase single-strand-specific [Vibrio sp. RC341] Length = 461 Score = 265 bits (677), Expect = 1e-68, Method: Composition-based stats. Identities = 110/432 (25%), Positives = 179/432 (41%), Gaps = 23/432 (5%) Query: 6 AMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFI---ATP---EQWRQHGISARQSH 59 + + L W NDLR+ DN L A D ++I ++ TP +Q + Sbjct: 2 SKKIGLYWFTNDLRVNDNPLLEQASQQVD-RLICLYCYPSITPFLARYAQQTQWGEAKKR 60 Query: 60 FIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRR 119 F+ +L + SLS G + + L Q +T ++ + +E + Sbjct: 61 FLNQTLADLDHSLSTLGQKLWVTPLLPY----QALRHLLTQVEITDIYVDAVAGSDERQA 116 Query: 120 DKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPV 179 + + I + S+L P + + +T FR V+ S P+ Sbjct: 117 IARIHQDFSSVHIHQQALRSLLSEP-QLPFALEALPSTFTQFR-----KQVETLSLSAPM 170 Query: 180 PAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNAL-HILRKFCKEKVYYYVEQRD-IP 237 R+ P+ + F GEQ L H F Y E R+ + Sbjct: 171 GYPRVLPPIEQGWQLPLMGIVTEPNHSAFIGGEQAGLTHCQNYFSSMLPSRYKETRNGLD 230 Query: 238 AIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAF 297 + +++ SP+L++G +SP+ + L+ + + + EL+WRE++ Sbjct: 231 GMDYSTKFSPWLALGAVSPKTIYAMLQRY--EAVHGANDSTYWIFFELLWREYFYWYARR 288 Query: 298 YPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMIT 357 Y + I + + + + WK G T PI++A MRQLN G+M NR R + Sbjct: 289 YGAKLFHFSGIGEKQPLT-SFYAQRFLQWKHGETPVPIVNACMRQLNQTGYMSNRGRQLV 347 Query: 358 ASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKR 417 AS LV +L +DWR G YF +QL+D D+ SN G WQ+ A G D R FN Q Sbjct: 348 ASCLVHELGLDWRYGAAYFETQLMDYDVGSNWGNWQYLAGVGADPR-DSRQFNLAKQAHT 406 Query: 418 FDPQGTFIRHWL 429 +DP+G F+ W Sbjct: 407 YDPKGEFVAKWC 418 >gi|167903517|ref|ZP_02490722.1| deoxyribodipyrimidine photolyase [Burkholderia pseudomallei NCTC 13177] Length = 302 Score = 265 bits (677), Expect = 1e-68, Method: Composition-based stats. Identities = 113/282 (40%), Positives = 154/282 (54%), Gaps = 8/282 (2%) Query: 203 AIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNR 262 + + GE A LR F ++ Y +RD P I TS+LSPY+ G LS RQ W+ Sbjct: 23 GLRDAWRFGEDAAHRRLRAFVDSRLGGYAAERDRPGIASTSRLSPYVRFGNLSARQLWHA 82 Query: 263 LKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHL 322 + + ++ +L+EL WREF + +P + + + + W D Sbjct: 83 AADAYAHGAAT-QADLDKFLSELGWREFGWTQLHHFPDLPR-RNLRHTLDGMPWRDDPAA 140 Query: 323 LQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLD 382 L AW++G TG+P +DA MR+L GWMHNR+RM+ ASFLVK LL+DWR GE +F L+D Sbjct: 141 LAAWRRGATGYPFVDAGMRELWATGWMHNRVRMVCASFLVKHLLIDWRAGEAWFWDTLVD 200 Query: 383 GDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHA 442 D ASN WQW A G D+ PYFRIFNP QG++FDP G ++R W+PEL +P IH Sbjct: 201 ADAASNAANWQWVAGCGADAAPYFRIFNPVAQGRKFDPDGAYVRRWVPELAGLPPATIHE 260 Query: 443 PHSWLDKN------DLSLNYPLPIVDHKKACHHTLNQYYAAK 478 P + L YPLPIV H A L+ + A + Sbjct: 261 PWAAPGAQLAAAGVRLGETYPLPIVAHDAARRRALDAFGAIR 302 >gi|121705010|ref|XP_001270768.1| DNA photolyase, putative [Aspergillus clavatus NRRL 1] gi|119398914|gb|EAW09342.1| DNA photolyase, putative [Aspergillus clavatus NRRL 1] Length = 613 Score = 265 bits (677), Expect = 1e-68, Method: Composition-based stats. Identities = 112/570 (19%), Positives = 194/570 (34%), Gaps = 103/570 (18%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 V L W R DLR+ D+ AL+AA + + I ++ P + + + F+ Sbjct: 2 KPVVLYWHRTDLRLHDSPALHAALALNPSIFIPIWTWDPHYVYRTRVGPNRWKFLLECQS 61 Query: 67 QVQKSLSQKG--IVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLE 124 + + + + + L + ++T L + + + RD+ + Sbjct: 62 DLSAAYTTLNPKQRLWVVR----EAPQSVLPKLWKKWQITHLVFEQDTDAYARDRDEAVL 117 Query: 125 KRLQHRVICKSFD-DSVLLPPGSILNHALQMYKVYT------------------------ 159 + + + L P ++ + Sbjct: 118 RMARDAGVEVIVQMGRTLFDPDELVRKNGGKPTMSIAQVQKAAEKIGDGTPAQPLEAPQS 177 Query: 160 -PFRKALIQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFP--------- 209 P + + + + L P S+ ++ D P Sbjct: 178 VPDPWKWEKMGLDGLGQDVVDARPDLNAPYRTSSDVQYSALMGPGRDFAVPTMEEIGIDG 237 Query: 210 --------IGEQNALHILRKFCKEKVY--YYVEQRDIPAI---QGTSQLSPYLSIGVLSP 256 GE AL +L + ++ Y + + + PA Q T+ LSP+L G LS Sbjct: 238 SLARSPHRGGETAALRVLAGYIQDGEYVGTFEKPKTSPAAFEPQATTLLSPHLHFGSLSV 297 Query: 257 RQCWNRLKEEFVDLLIKPKSGA---FSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEK 313 R+ W ++ + K+ A + +L++R+ Y A + Sbjct: 298 RKFWWDVQGVLQQRRKQKKANASIPTNLPGQLLFRDMYFAAQAAIGHAFGQTLGNKYVRF 357 Query: 314 IEWN------------------------KDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWM 349 I+W+ + + + WK+G TGFP IDA MRQL GW+ Sbjct: 358 IDWHLPTNYITTEEGKYQPDGTYTVDSSEAENWFRRWKEGRTGFPWIDALMRQLKLEGWI 417 Query: 350 HNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRI 408 H+ R A FL + V W G E F L+D + A N G WQW S Y+ Sbjct: 418 HHLGRHSVACFLTRGGCYVSWERGAEVFEDWLVDHETACNVGNWQW-LSCTAFYSQYYHC 476 Query: 409 FNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLN------------- 455 ++P GK++DP+G F+R + PEL N +YI+ P + Sbjct: 477 YSPIAFGKKWDPEGEFVRRYCPELANFDKKYIYEPWKAPLPDQKKWGCRVTGDGSGSDDS 536 Query: 456 -------YPLPIVDHKKACHHTLNQYYAAK 478 YP P+ D + L+ A Sbjct: 537 KHEGLAVYPKPMFDFDERRRICLDGMKHAY 566 >gi|326799096|ref|YP_004316915.1| cryptochrome, DASH family [Sphingobacterium sp. 21] gi|326549860|gb|ADZ78245.1| cryptochrome, DASH family [Sphingobacterium sp. 21] Length = 434 Score = 264 bits (676), Expect = 2e-68, Method: Composition-based stats. Identities = 110/433 (25%), Positives = 188/433 (43%), Gaps = 25/433 (5%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQW-----RQHGISARQSHFIYA 63 LVW RNDLR+ DN+ L+ A +D +V+ V++ P Q+ H ++ FI Sbjct: 5 TILVWFRNDLRVRDNEILWQALAKAD-RVVPVYVFDPRQFTPLKNGMHKTGVIRAKFILE 63 Query: 64 SLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLL 123 S+ ++ SL G E L + + +V +++++R+ E L+ Sbjct: 64 SVQDLRLSLRSLGADLLVVSG----YPEEILPTLAERYQVKEVYHHREVAKEETHISTLV 119 Query: 124 EKRL-QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAI 182 E+ L + R+ + F L + + + FRK + + PV I Sbjct: 120 EEALWKKRLNLRHFIGHTLYHKEDLPFPIKDIPDAFATFRKKIERETTIRPSVETPV-KI 178 Query: 183 RLTGPVTPSNIPRFFDYPFQA------IDPMFPIGEQNALHILRKFCKEKVYYYVEQRDI 236 + + S IP F A F GE L L + Sbjct: 179 EVPDNLEASEIPSLASLGFSAGLIGIADQSPFKGGETEGLRRLETLLAGADTASLTG-SF 237 Query: 237 PAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMA 296 + +GT LSP++++G LS ++ +K+ L K ++ A + L+WR+++R + Sbjct: 238 GSEEGT-VLSPWIAMGCLSVHTVYHAVKKYEDKSLPKKQAAA--IITGLLWRDYFRFMFK 294 Query: 297 FYPS-VCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRM 355 + + + + F E D+ L WK+G TG P +DAAM QLNTIG++ + RM Sbjct: 295 KHGNKFFLQQGFSNEIPAYELVGDA-LFDRWKRGETGDPFVDAAMHQLNTIGFISHTARM 353 Query: 356 ITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQG 415 + A +LV +L + +G YF +L+D + ASN G W A G+ + I + Sbjct: 354 LVAHYLVSNLNISHLLGAAYFEDKLVDYNPASNYGNWAHIAGVGSSTKDNG-IRDIKKLQ 412 Query: 416 KRFDPQGTFIRHW 428 D QG +++ W Sbjct: 413 NLLDAQGEYVKRW 425 >gi|167895131|ref|ZP_02482533.1| deoxyribodipyrimidine photolyase [Burkholderia pseudomallei 7894] Length = 299 Score = 264 bits (676), Expect = 2e-68, Method: Composition-based stats. Identities = 113/282 (40%), Positives = 154/282 (54%), Gaps = 8/282 (2%) Query: 203 AIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNR 262 + + GE A LR F ++ Y +RD P I TS+LSPY+ G LS RQ W+ Sbjct: 20 GLRDAWRFGEDAAHRRLRAFVDSRLGGYAVERDRPGIASTSRLSPYVRFGNLSARQLWHA 79 Query: 263 LKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHL 322 + + ++ +L+EL WREF + +P + + + + W D Sbjct: 80 AADAYAHGAAT-QADLDKFLSELGWREFGWTQLHHFPDLPR-RNLRHTLDGMPWRDDPAA 137 Query: 323 LQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLD 382 L AW++G TG+P +DA MR+L GWMHNR+RM+ ASFLVK LL+DWR GE +F L+D Sbjct: 138 LAAWRRGATGYPFVDAGMRELWATGWMHNRVRMVCASFLVKHLLIDWRAGEAWFWDTLVD 197 Query: 383 GDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHA 442 D ASN WQW A G D+ PYFRIFNP QG++FDP G ++R W+PEL +P IH Sbjct: 198 ADAASNAANWQWVAGCGADAAPYFRIFNPVAQGRKFDPDGAYVRRWVPELAGLPPATIHE 257 Query: 443 PHSWLDKN------DLSLNYPLPIVDHKKACHHTLNQYYAAK 478 P + L YPLPIV H A L+ + A + Sbjct: 258 PWAAPGAQLAAAGVRLGETYPLPIVAHDAARRRALDAFGAIR 299 >gi|290997872|ref|XP_002681505.1| predicted protein [Naegleria gruberi] gi|284095129|gb|EFC48761.1| predicted protein [Naegleria gruberi] Length = 528 Score = 264 bits (675), Expect = 2e-68, Method: Composition-based stats. Identities = 123/461 (26%), Positives = 202/461 (43%), Gaps = 43/461 (9%) Query: 12 VWLRNDLRITDNKALYAACHNSDAK---VIAVFIATPEQWRQHGIS-----ARQSHFIYA 63 +W RNDLRI DN+ALY A + + ++ ++I Q + Sbjct: 34 IWFRNDLRIHDNEALYYAIKKAKKENKKLLPIYIFDKSQSQLPSPFSISKIPNSFTLFEQ 93 Query: 64 SLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLL 123 + + +++ + + + S+ L L ++ K+F K + Sbjct: 94 NFEKEIENICNRNNINFIKKWSSTLIHKNDLPYTDLPNQIPKVFS---------AFRKKI 144 Query: 124 EKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQAD--LRSLPVPA 181 EK + + I + I + + + + + L Sbjct: 145 EKAIDEKDIE--------IECYEIEKEDYEELLLSEEEINKIHSQFSKNSNLITKLENVN 196 Query: 182 IRLTGPVTPSNIPRFFDYPFQAIDP---MFPIGEQNALHILRKFCKEKVYYYVEQRDIPA 238 + + P FD + F GE AL + + + K+ Y R+ Sbjct: 197 EFMKEYLYPDMEKTQFDNEIKYDQRSVVKFIGGEDKALKRCKFYIENKLKNYSTTRNGNI 256 Query: 239 IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFY 298 +++LSP+L+ G +S R + +++ + K KS A ++EL+WR+FY++L Sbjct: 257 GDYSTKLSPWLANGCISSRYIYTEIQKNSNE---KSKSSANILVSELLWRDFYKYLAWKM 313 Query: 299 PS-VCMGKPFIPWTE-KIEWN-----KDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHN 351 + K P E EW + Q W +G TG+P +DA MR+L G+M+N Sbjct: 314 GNSFFYEKALQPNKELDYEWEVPLNEYKNERFQQWCKGKTGYPFVDACMRELLNTGFMNN 373 Query: 352 RLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLA-SNNGGWQWAASTGNDSVPYFRIFN 410 R RM+ ASFL+KD+ +DWR+G EYF QLLD + SN G W W+A G D P R FN Sbjct: 374 RGRMVVASFLIKDMKIDWRMGAEYFERQLLDSTDSCSNYGNWAWSAGIGCDFRP--RYFN 431 Query: 411 PTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND 451 P QG D G FI+ W+ EL +VP++ IH P+ LD+++ Sbjct: 432 PIKQGLDHDKNGEFIKIWIHELASVPSKSIHLPYITLDEDE 472 >gi|262051762|ref|ZP_06023980.1| hypothetical protein SA930_1845 [Staphylococcus aureus 930918-3] gi|259160373|gb|EEW45399.1| hypothetical protein SA930_1845 [Staphylococcus aureus 930918-3] Length = 457 Score = 264 bits (675), Expect = 2e-68, Method: Composition-based stats. Identities = 134/479 (27%), Positives = 227/479 (47%), Gaps = 31/479 (6%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M++ ++ L R+ N L+ + + A + PE+ S ++ F +L Sbjct: 1 MAIAVL-LNRMFRMEHNP-LFEYIYQQKEDIDACYFIIPEE-DMSSASDLKAQFYRGTLQ 57 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 + +SL + + + S + + S+C + ++++ + +L +R Sbjct: 58 RFYQSL-------HAEKLTPYVMSYDDIISFCKENNISEVVTAGDIMSYHLEEYDILHQR 110 Query: 127 L---QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIR 183 + R+ + +N + Y V+T F K L D+ + + Sbjct: 111 SLFNEARIAVTLIRGNHYFKASKTMNQQGEPYNVFTSFYKKWRPYLRHRDVYHYDLKSFE 170 Query: 184 LTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS 243 +P ++ F D F + I EQN + F + + Y RD TS Sbjct: 171 DFVIASPDDLV-FDDIAFGSS----QIIEQN---KWQHFLDQDIQNYESGRDYLPEVLTS 222 Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCM 303 QLS L+ G+L + +N L + + ++ +++ ELI+REFY LM YP Sbjct: 223 QLSVALAYGLLDIIEIFNDLLARY----DEDEANYEAFIRELIFREFYYVLMTQYPETSY 278 Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363 + F P +I+W+++ AW +G TGFPIIDAA+ +L G+MHNR+RM+ + FL K Sbjct: 279 -QAFKPKYRQIKWSQNEADFNAWCEGQTGFPIIDAAIMELTQTGFMHNRMRMVVSQFLTK 337 Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423 DL +DW GE++F L+D D ASN GWQW+ASTG D+V YFR+FNP Q +RFD + Sbjct: 338 DLFIDWTWGEKFFRKHLIDYDAASNIHGWQWSASTGTDAVLYFRMFNPIRQSERFDAKAL 397 Query: 424 FIRHWLPELNNVPTQYIH-----APHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477 +I+ +LP N + +Y+H + + +L +YP +VDH++ L + A Sbjct: 398 YIKTYLPIFNQIDAKYLHDTQRNESNLFEQGIELGSHYPRQMVDHQEKRTQVLATFKAL 456 >gi|170878123|gb|ACB38886.1| putative 6-4 photolyase [Cercospora zeae-maydis] Length = 691 Score = 264 bits (675), Expect = 2e-68, Method: Composition-based stats. Identities = 120/585 (20%), Positives = 195/585 (33%), Gaps = 113/585 (19%) Query: 6 AMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASL 65 + W R DLR+ D+ AL AA + ++ + + + F+ Sbjct: 2 GKPRVIYWFRTDLRLHDSPALKAALDLKPEVLYPIWCWDSHYVYRARVGVNRWQFLIDCQ 61 Query: 66 LQVQKSLSQKG--IVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLL 123 V +S+++ + + ++ L ++T L + + + RD+ + Sbjct: 62 NDVSESITKLNQKSKLFVLR----EPAVTLLPKLFKAWKITHLVFEKDTDAYARERDEKV 117 Query: 124 EKRLQHRVICKSFD-DSVLLPPGSILNHALQ-------------------------MYKV 157 + L P I+ + + Sbjct: 118 MHMAGEAGVKVIVKVGRTLYDPDEIVKNNGGKPTMSITQLQHAGNKIGEIEEPVETPTSL 177 Query: 158 YTPFRKALIQNLVQADLRSLPVPAIR----------LTGPVTPSNIPRFFDYPFQAIDPM 207 P L + + R + GP + P + A Sbjct: 178 PDPGEMKLEIEHTEPEAEPDINAKHREKDTVTFSSGIAGPKGDFSPPTLEELGMPAATSP 237 Query: 208 FPIGEQNALHILRKFCKEKVYY--YVEQRDIPAI---QGTSQLSPYLSIGVLSPRQCWNR 262 GE L L + K++ Y + + + PA Q T SPYL G LS R ++R Sbjct: 238 HKGGESVVLERLEEMFKDEDYTGTFQKPKTSPAAFEPQSTFLTSPYLHFGALSCRYFYHR 297 Query: 263 LKEEFVDLLIKPK---SGAFSWLNELIWREFY---RHLMAFYPSVCMGKP---FIPWTEK 313 + E + K S S +L++R+ Y + + + +G FIPW Sbjct: 298 VAEIVAKRNKEKKPTSSPPESLAGQLLFRDMYFAAQAALGWQFGQTLGNSHCRFIPWHLP 357 Query: 314 ----------------------------------IEWNKDSH---LLQAWKQGYTGFPII 336 W LQ W G TGFP I Sbjct: 358 SKVDMSSKRITGAHEIDSEETELWLQRWTHGITGFPWIDSEETELWLQRWTHGTTGFPWI 417 Query: 337 DAAMRQLNTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWA 395 D MRQL GW+H+ R A FL + + W G E F L+D + A N G WQW Sbjct: 418 DVIMRQLRHEGWIHHLARHSVACFLTRGGCYISWERGLEVFEELLIDHESACNIGNWQW- 476 Query: 396 ASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSW----LDKND 451 S ++R ++P GK++D G FIR ++PEL + P +YI+ PH K Sbjct: 477 LSCTAFFAQFYRCYSPVAFGKKWDENGDFIRKFVPELAHFPKKYIYEPHKAPLADQKKAG 536 Query: 452 LSLN--------------YPLPIVDHKKACHHTLNQYYAAKKQSL 482 + ++ YP P+ D + L AA + L Sbjct: 537 VRVDGDGSETKGKDGLALYPKPMFDFNERREICLRGMKAAYRVGL 581 >gi|166007599|gb|ABY77633.1| At1g04400-like protein [Arabidopsis lyrata] Length = 450 Score = 264 bits (675), Expect = 2e-68, Method: Composition-based stats. Identities = 95/333 (28%), Positives = 156/333 (46%), Gaps = 20/333 (6%) Query: 170 VQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQA---------IDPMFPIGEQNALHILR 220 +++ + P + +T + + + + G NA IL Sbjct: 1 IESVMLPPPWRLMPITAVAEAVWACSIEELGLENEAEKPSNALLTRAWSPGWSNADKILN 60 Query: 221 KFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEF----VDLLIKPKS 276 +F ++++ Y + TS LSPYL G +S R + + + D + + Sbjct: 61 EFIEKQLIDYAKNSKKVVGNSTSLLSPYLHFGEISVRHVFQCARMKQIIWARDKNSEGEE 120 Query: 277 GAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPII 336 A +L + RE+ R++ +P + + W+ D +AW+QG TG+P++ Sbjct: 121 SADLFLRGIGLREYSRYICFNFP-FTHEQSLLSHLRFFPWDADVDKFKAWRQGRTGYPLV 179 Query: 337 DAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAA 396 DA MR+L GWMHNR+R+I +SF VK LL+ W+ G +YF LLD DL + GWQ+ + Sbjct: 180 DAGMRELWATGWMHNRIRVIVSSFAVKFLLLPWKWGMKYFWDTLLDADLECDILGWQYIS 239 Query: 397 STGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSW------LDKN 450 + D R+ NP +QG ++DP+G +IR WLPEL +PT++IH P Sbjct: 240 GSIPDGHELDRLDNPALQGAKYDPEGEYIRQWLPELARLPTEWIHHPWDAPLTVLKASGV 299 Query: 451 DLSLNYPLPIVDHKKACHHTLNQYYAAKKQSLL 483 +L NY PIVD A ++ ++ Sbjct: 300 ELGTNYAKPIVDIDTARELLAKAISRTREAQIM 332 >gi|126665353|ref|ZP_01736335.1| Deoxyribodipyrimidine photolyase [Marinobacter sp. ELB17] gi|126629981|gb|EBA00597.1| Deoxyribodipyrimidine photolyase [Marinobacter sp. ELB17] Length = 441 Score = 264 bits (675), Expect = 2e-68, Method: Composition-based stats. Identities = 103/430 (23%), Positives = 185/430 (43%), Gaps = 23/430 (5%) Query: 10 HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHG-----ISARQSHFIYAS 64 L W DLR+ DN AL AA + ++ V++ P ++ + + F++ S Sbjct: 3 TLYWFTRDLRLHDNAALLAASKSD--MLLCVYVVEPRWFKPGPLQCKTMGHHRWRFLWQS 60 Query: 65 LLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLE 124 L+ +++SL G + D + + ++++ +RQ E + + L+ Sbjct: 61 LIGLERSLRALGQRLHI----AWGDPETVIPALAHGHVISRIVRSRQPGTREAVQWQTLQ 116 Query: 125 KRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL 184 +L ++ ++ L + + ++ FR LI+ L +P +++ Sbjct: 117 DKLP-KIAFTQYETLGLFTESLLPMPLQDLPTTFSQFR-KLIEKKGDRGPSRLRIPTLKM 174 Query: 185 TGP---VTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVY--YYVEQRD-IPA 238 P + N F GEQ L L+ F Y E R+ + Sbjct: 175 LPPAPGLPDDNRGECPAIQEPTQPQAFRGGEQAGLARLQDFLAGTHAIDTYKETRNALDD 234 Query: 239 IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFY 298 +S+ SP+L+ G LS R+ + + + + E++WRE++ + Sbjct: 235 WNSSSKFSPWLAHGCLSAREVADSI--SLYEQQHTSNESTYWLWFEVLWREYFYWYALRH 292 Query: 299 PSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITA 358 S + + + H +AW +G T +P+++AAM QL G++ NR R + A Sbjct: 293 GSELFRRDGVQGKRQ-SVTFYGHRFKAWCEGNTSYPLVNAAMNQLRETGYISNRSRQLVA 351 Query: 359 SFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRF 418 S + +L +DWR G +F QL+D D+ASN G WQ+ A G D R FN Q +++ Sbjct: 352 SCFINELELDWRYGAAWFEQQLIDYDVASNYGNWQYLAGVGADPRGLRR-FNLDKQAQQY 410 Query: 419 DPQGTFIRHW 428 DP GTF+ W Sbjct: 411 DPNGTFVERW 420 >gi|224032111|gb|ACN35131.1| unknown [Zea mays] Length = 495 Score = 264 bits (675), Expect = 2e-68, Method: Composition-based stats. Identities = 102/326 (31%), Positives = 157/326 (48%), Gaps = 16/326 (4%) Query: 167 QNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQA--IDPMFPIGEQNALHILRKFCK 224 Q L L + P A + + D + + G +NA ++L +F Sbjct: 9 QYLAPTRLVAAPGLANVRCCSIDDLGLESSKDVESSNALLSRAWSPGWRNAENMLEEFVS 68 Query: 225 EKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFS---- 280 + Y E TS LSPYL G LS R + +K V + KS A Sbjct: 69 YGLLEYSEHGMKVGGSTTSLLSPYLHFGELSVRMIYQLVKMRQVKWQNEGKSEAEESVRL 128 Query: 281 WLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAM 340 +L + +RE+ R+L YP + F+ + W D ++W+QG TG+P++DA M Sbjct: 129 FLRSIGFREYSRYLCFNYP-FTHERSFLGNLKHYPWLLDEGRFKSWRQGMTGYPLVDAGM 187 Query: 341 RQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGN 400 R+L GW HNR+R+I +SF VK L + W G +YF LLD DL S+ GWQ+ + + Sbjct: 188 RELWATGWTHNRIRVIVSSFAVKFLQIPWIWGMKYFWDVLLDADLESDILGWQYISGSLP 247 Query: 401 DSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWL------DKNDLSL 454 D R+ NP +QG+++DP G ++R W+PEL +PT++IH+P + +L Sbjct: 248 DGHELSRLDNPEVQGQKYDPDGEYVRTWIPELARMPTEWIHSPWAAPNSILQVAGVELGF 307 Query: 455 NYPLPIVDHKKACH---HTLNQYYAA 477 NYP PIV+ A ++ + Sbjct: 308 NYPKPIVELHMARECLDDAISTMWQL 333 >gi|167816639|ref|ZP_02448319.1| deoxyribodipyrimidine photolyase [Burkholderia pseudomallei 91] Length = 291 Score = 264 bits (674), Expect = 3e-68, Method: Composition-based stats. Identities = 113/282 (40%), Positives = 154/282 (54%), Gaps = 8/282 (2%) Query: 203 AIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNR 262 + + GE A LR F ++ Y +RD P I TS+LSPY+ G LS RQ W+ Sbjct: 12 GLRDAWRFGEDAAHRRLRAFVDSRLGGYAAERDRPGIASTSRLSPYVRFGNLSARQLWHA 71 Query: 263 LKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHL 322 + + ++ +L+EL WREF + +P + + + + W D Sbjct: 72 AADAYAHGAAT-QADLDKFLSELGWREFGWTQLHHFPDLPR-RNLRHTLDGMPWRDDPAA 129 Query: 323 LQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLD 382 L AW++G TG+P +DA MR+L GWMHNR+RM+ ASFLVK LL+DWR GE +F L+D Sbjct: 130 LAAWRRGATGYPFVDAGMRELWATGWMHNRVRMVCASFLVKHLLIDWRAGEAWFWDTLVD 189 Query: 383 GDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHA 442 D ASN WQW A G D+ PYFRIFNP QG++FDP G ++R W+PEL +P IH Sbjct: 190 ADAASNAANWQWVAGCGADAAPYFRIFNPVAQGRKFDPDGAYVRRWVPELAGLPPATIHE 249 Query: 443 PHSWLDKN------DLSLNYPLPIVDHKKACHHTLNQYYAAK 478 P + L YPLPIV H A L+ + A + Sbjct: 250 PWAAPGAQLAAAGVRLGETYPLPIVAHDAARRRALDAFGAIR 291 >gi|258541536|ref|YP_003186969.1| deoxyribodipyrimidine photolyase [Acetobacter pasteurianus IFO 3283-01] gi|256632614|dbj|BAH98589.1| deoxyribodipyrimidine photolyase [Acetobacter pasteurianus IFO 3283-01] gi|256635671|dbj|BAI01640.1| deoxyribodipyrimidine photolyase [Acetobacter pasteurianus IFO 3283-03] gi|256638726|dbj|BAI04688.1| deoxyribodipyrimidine photolyase [Acetobacter pasteurianus IFO 3283-07] gi|256641780|dbj|BAI07735.1| deoxyribodipyrimidine photolyase [Acetobacter pasteurianus IFO 3283-22] gi|256644835|dbj|BAI10783.1| deoxyribodipyrimidine photolyase [Acetobacter pasteurianus IFO 3283-26] gi|256647890|dbj|BAI13831.1| deoxyribodipyrimidine photolyase [Acetobacter pasteurianus IFO 3283-32] gi|256650943|dbj|BAI16877.1| deoxyribodipyrimidine photolyase [Acetobacter pasteurianus IFO 3283-01-42C] gi|256653934|dbj|BAI19861.1| deoxyribodipyrimidine photolyase [Acetobacter pasteurianus IFO 3283-12] Length = 309 Score = 264 bits (674), Expect = 3e-68, Method: Composition-based stats. Identities = 114/278 (41%), Positives = 152/278 (54%), Gaps = 7/278 (2%) Query: 203 AIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDI-PAIQGTSQLSPYLSIGVLSPRQCWN 261 A+ + GE+ A L +F + + Y QRD A GTS LSPY+ +G +S RQ W+ Sbjct: 38 ALPSGWTSGEKAAHANLHRFIENALADYETQRDRADAPHGTSLLSPYIRVGQISVRQIWH 97 Query: 262 RLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSH 321 ++ + A +L EL WR+F M P + + + + W D+ Sbjct: 98 AIRHAEHQ-NPHLATPAEKFLAELGWRDFAWMQMFTTPDLAT-RNLRAEFDHMPWRADAA 155 Query: 322 LLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLL 381 L AW+QG TGFP++DA MRQL GWMHNR+RM+ ASFL K LL DWR GE +F +QLL Sbjct: 156 DLAAWQQGQTGFPLVDAGMRQLARTGWMHNRVRMVVASFLTKHLLTDWREGERWFYAQLL 215 Query: 382 DGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIH 441 D D A N WQW A TG D+ P+FRIFNP Q +++DP G +IR W+PEL + + IH Sbjct: 216 DADAAVNAMNWQWGAGTGIDAAPWFRIFNPVGQSEKYDPAGQYIRTWVPELAALDNKTIH 275 Query: 442 APHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479 P + L YP PIVD K L + K Sbjct: 276 TPWKSTQR----LKYPAPIVDLKLGRLRALENWKNLPK 309 >gi|237654597|ref|YP_002890911.1| deoxyribodipyrimidine photo-lyase [Thauera sp. MZ1T] gi|237625844|gb|ACR02534.1| Deoxyribodipyrimidine photo-lyase [Thauera sp. MZ1T] Length = 526 Score = 264 bits (674), Expect = 3e-68, Method: Composition-based stats. Identities = 100/501 (19%), Positives = 177/501 (35%), Gaps = 41/501 (8%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 MS LVW + DLR+ A V+ V I P W Q + + F+ S Sbjct: 1 MSYGLVWFKRDLRLA--DHAALATAARRGPVLCVLIVEPSLWAQPDAARQHYEFMLESAR 58 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYE-INEVRRDKLLEK 125 ++ L++ G +++ LD L + + RD+ + + Sbjct: 59 ELHAGLARVGGRLHLL----VGEAVAVLDRLHAAAPFDTLHSHEETGNAASYARDRAVAR 114 Query: 126 RLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185 + R + ++ + + + V+ + + L Sbjct: 115 WCRARGVRWHEPAQF-----GVVRRLDDRDRWQAAWEAQVAAPQVELP-EPSRLRFVALP 168 Query: 186 GPVTPSNIPRFFD--------------YPFQAIDP--MFPIGEQNALHILRKFCKEKVYY 229 + P + D A +P G AL +L F + Sbjct: 169 AALQPGAGATWPDRGAIAAVRAPAAVALGLDAFEPPRRQRGGRHAALEVLHDFLDARSGQ 228 Query: 230 YVEQRDIP--AIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDL--LIKPKSGAFSWLNEL 285 Y P A S+LSPYL+ G LS R+ + L + ++G ++L+ L Sbjct: 229 YRGGISSPLKAPTACSRLSPYLAWGCLSLRELVQATRARVAALPEGDRRRAGLAAFLSRL 288 Query: 286 IWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNT 345 W + + P++ + E + A G TG+P++DA + L Sbjct: 289 YWHCHFIQKLESEPTLEFRNLHRGYDGLREPEWNQAHFDALVGGRTGWPLVDACVAMLRA 348 Query: 346 IGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPY 405 GW++ R+R + S L + WR + LD + + Q +G + Sbjct: 349 TGWLNFRMRAMLVSVAAYPLWLHWREVGLWLARAFLDYEPGIHWSQLQMQ--SGTTGINT 406 Query: 406 FRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND------LSLNYPLP 459 R++NP Q + DPQG F+R WLP L VP ++ P + + + LP Sbjct: 407 TRVYNPIKQARDHDPQGVFVRRWLPALRRVPDTWLFEPWRMPESVQARCGVRVGEDIALP 466 Query: 460 IVDHKKACHHTLNQYYAAKKQ 480 +VD + A + +A + Q Sbjct: 467 VVDLESATRAAKTRIHALRAQ 487 >gi|315123107|ref|YP_004065113.1| Deoxyribodipyrimidine photolyase [Pseudoalteromonas sp. SM9913] gi|315016867|gb|ADT70204.1| Deoxyribodipyrimidine photolyase [Pseudoalteromonas sp. SM9913] Length = 436 Score = 264 bits (674), Expect = 3e-68, Method: Composition-based stats. Identities = 110/425 (25%), Positives = 183/425 (43%), Gaps = 21/425 (4%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQW-----RQHGISARQSHFIYASL 65 L WL+NDLRI DN L ++ VF+ P + +Q + F+ SL Sbjct: 6 LYWLQNDLRIDDNPILNDLSQQ-QCELDIVFVINPAWFKSNNYQQKPYGVHKQRFLMQSL 64 Query: 66 LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125 ++Q+S+ G + D + L + + ++ Y+ Q + E R+ L+ Sbjct: 65 YELQESVLGLGQTLHILEG----DPVRVLTQRINELGIDEVVYSEQIGVYEQRQITALKS 120 Query: 126 RLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185 + V+ KS L + + +TPFRK + + L S+P A RL Sbjct: 121 KCA-TVVFKSVMQDTLYQQQQLPFELADLPTGFTPFRKKIEATGIS--LSSVPFSAKRLP 177 Query: 186 GPVTPSNIPRFFDYPFQAIDPMFPIGEQNAL-HILRKFCKEKVYYYVEQRDIPAI-QGTS 243 P+ + P +P+ G + L H L+ F Y R+ ++ Sbjct: 178 PPIILCAKQPISEPPTG--NPLLQGGHKAGLAHCLQYFSSALPSSYKITRNELGGFDNST 235 Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCM 303 + S +L+ G +S +Q + + + + + EL+WRE+++ Sbjct: 236 KFSSWLAFGCISAKQIFCAV--DAYEAQHGENESTYWIKFELLWREYFKWHAINVKHQLF 293 Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363 + + + W QG T FP+++A M++LN G++ NR R I AS LV Sbjct: 294 TFKGKKQSSPLT-TFSPNRFAKWCQGSTPFPLVNAIMKELNATGFITNRSRQIAASCLVN 352 Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423 +L +DWR G YF QL+D D+A+N G WQ+ A G D R FN Q +++DP G Sbjct: 353 ELQLDWRYGAAYFEQQLIDYDVAANWGNWQYIAGVGVDPRG-GRHFNLAKQTQQYDPHGE 411 Query: 424 FIRHW 428 +I W Sbjct: 412 YIAKW 416 >gi|194378884|dbj|BAG57993.1| unnamed protein product [Homo sapiens] Length = 461 Score = 264 bits (674), Expect = 3e-68, Method: Composition-based stats. Identities = 99/380 (26%), Positives = 156/380 (41%), Gaps = 25/380 (6%) Query: 123 LEKRLQHRVICKSFDDSVLLPPGSILNHALQ-MYKVYTPFRKALIQNLVQADLRSL---- 177 ++ + V + + L I+ Q Y F+ + + + L Sbjct: 1 MKMAKEAGVEVVTENSHTLYDLDRIIELNGQKPPLTYKRFQAIISRMELPKKPVGLVTSQ 60 Query: 178 ---PVPAIRLTGPVTPSNIPRFFDYPF--QAIDPM-FPIGEQNALHILRKFCKEKVYYYV 231 A +P + F + + P + GE AL L K + K + Sbjct: 61 QMESCRAEIQENHDETYGVPSLEELGFPTEGLGPAVWQGGETEALARLDKHLERKAWVAN 120 Query: 232 EQRDIPAIQGT----SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIW 287 +R + LSPYL G LS R + RL + + + + + S +L+W Sbjct: 121 YERPRMNANSLLASPTGLSPYLRFGCLSCRLFYYRLWDLYKKVK-RNSTPPLSLFGQLLW 179 Query: 288 REFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIG 347 REF+ P + P +I W+++ L W +G TGFP IDA M QL G Sbjct: 180 REFFYTAATNNPRFDRMEG-NPICIQIPWDRNPEALAKWAEGKTGFPWIDAIMTQLRQEG 238 Query: 348 WMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYF 406 W+H+ R A FL + DL V W G F LLD D + N G W W S +F Sbjct: 239 WIHHLARHAVACFLTRGDLWVSWESGVRVFDELLLDADFSVNAGSWMW-LSCSAFFQQFF 297 Query: 407 RIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLD------KNDLSLNYPLPI 460 + P G+R DP G +IR +LP+L P++YI+ P + + K + ++YP PI Sbjct: 298 HCYCPVGFGRRTDPSGDYIRRYLPKLKAFPSRYIYEPWNAPESIQKAAKCIIGVDYPRPI 357 Query: 461 VDHKKACHHTLNQYYAAKKQ 480 V+H + + + +Q Sbjct: 358 VNHAETSRLNIERMKQIYQQ 377 >gi|157325494|gb|ABF59870.2| cryptochrome dash [Karenia brevis] Length = 512 Score = 263 bits (673), Expect = 3e-68, Method: Composition-based stats. Identities = 110/466 (23%), Positives = 196/466 (42%), Gaps = 40/466 (8%) Query: 1 MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQW------RQHGIS 54 M A A + W R DLR+ D AL AC ++ ++ +++ P ++ S Sbjct: 1 MVAPAAGTARAFWFRTDLRLDDQPALSTACEDA-LSLLPIYVFDPAKFIDLTLAGARKSS 59 Query: 55 ARQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEI 114 AR++ F+ SL+ +++ L +G D + C + ++ + Sbjct: 60 ARRARFLIESLVNLRRRLEDRGSGLAV----AIGDPAVVIADLCA--SASAIYVTQGICS 113 Query: 115 NEVRRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADL 174 E + + +E +++ + L P + + +++ F+K + Sbjct: 114 EETQDEARVESKMKAPALLSRVWGGSLYFPDECGCNPTKAPLLFSNFKKKAEVFGKIREP 173 Query: 175 RSLPVPAIRLTGPVTPSN-------IPRFFDYPFQAIDP------------MFPIGEQNA 215 + L G V + +P + F++ + F GE A Sbjct: 174 LAELTKLPSLPGAVCEPDLSQALRFMPTLAELGFESEEINAAEFDDPRGVLPFSGGEDAA 233 Query: 216 LHILRKFCKEKVY--YYVEQRDIPAIQG-TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLI 272 L L+K+ + + Y R+ +G +S+ SP+L++G LSPR+ W ++ + + Sbjct: 234 LTRLQKWIWDDDHLREYWMIRNGMKGEGYSSKFSPWLALGCLSPRRVWKEVQRYEKERV- 292 Query: 273 KPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTG 332 + + EL+WR+F+ ++ + K I K W + L WK G TG Sbjct: 293 -KNKSTYWLVFELMWRDFFVYMALTHGDKLFRKGGITGDRKRSWPGSTTDLDRWKNGKTG 351 Query: 333 FPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGW 392 ++DA M +L GWM NR R AS+L+ ++ VDWR G +F LLD D SN G W Sbjct: 352 DLLVDANMLELLATGWMSNRGRQNVASYLIFNMRVDWRYGAAHFEEHLLDYDPCSNWGNW 411 Query: 393 QWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQ 438 AA V FN Q R+DP +++HWL L++ ++ Sbjct: 412 VAAAGLTGQRVNK---FNTLYQLDRYDPSREYVKHWLGNLDDQHSK 454 >gi|85711299|ref|ZP_01042358.1| Deoxyribodipyrimidine photolyase [Idiomarina baltica OS145] gi|85694800|gb|EAQ32739.1| Deoxyribodipyrimidine photolyase [Idiomarina baltica OS145] Length = 441 Score = 263 bits (673), Expect = 4e-68, Method: Composition-based stats. Identities = 116/437 (26%), Positives = 179/437 (40%), Gaps = 19/437 (4%) Query: 1 MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPE----QWRQHGISAR 56 M+A LVW DLR+ DN L A V I ++ +GIS Sbjct: 1 MEAKH--QTGLVWFNLDLRLIDNLTLIRAAEQCQQLVCCFVIDESWFKGNRYGLNGISQP 58 Query: 57 QSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINE 116 + +I ++ + SL Q G + + + V ++ + + E Sbjct: 59 RWRYIQQAIADLAASLQQHGQQLIIRKG----QPTTEISTLISTLEVDAVYCSDDPGVYE 114 Query: 117 VRRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRS 176 RR L KR + + + + LL + ++ Y+ FRK + S Sbjct: 115 RRRWDTLVKRFPY-ITFERVSNHTLLTERELDFPLEELPATYSAFRKRFE--PLAETFPS 171 Query: 177 LPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHIL-RKFCKEKVYYYVEQRD 235 + P P PF GE A L + F +Y E R+ Sbjct: 172 GQALSQLKALPPMPRRTIASEHTPFVEPSGYLQGGELAAHEHLTQYFKSSAPSHYKETRN 231 Query: 236 -IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHL 294 + +++LS L++G +SPRQ + L+ + + + EL+WRE++ Sbjct: 232 ALDNFADSTKLSAALALGNISPRQVIDALR--NYEATQGANESTYWIVFELMWREYFHWY 289 Query: 295 MAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLR 354 + + I +K + S AW QG T +PI++A M QLN G+M NR R Sbjct: 290 LRRFQEKVFKFGGI-QDKKPTTSFYSQRFAAWCQGKTPYPIVNACMHQLNQTGYMSNRGR 348 Query: 355 MITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQ 414 + AS L+ +L +DWR G YF QL+D D+ASN G WQ+ A G D R FN Q Sbjct: 349 QLVASCLIHELQLDWRYGAAYFEQQLIDYDVASNWGNWQYLAGVGADPRGSRR-FNLDKQ 407 Query: 415 GKRFDPQGTFIRHWLPE 431 + +DP G FI+ W E Sbjct: 408 TQTYDPNGEFIKRWHGE 424 >gi|167846551|ref|ZP_02472059.1| deoxyribodipyrimidine photolyase [Burkholderia pseudomallei B7210] Length = 289 Score = 263 bits (672), Expect = 5e-68, Method: Composition-based stats. Identities = 113/282 (40%), Positives = 154/282 (54%), Gaps = 8/282 (2%) Query: 203 AIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNR 262 + + GE A LR F ++ Y +RD P I TS+LSPY+ G LS RQ W+ Sbjct: 10 GLRDAWRFGEDAAHRRLRAFVDSRLGGYAAERDRPGIASTSRLSPYVRFGNLSARQLWHA 69 Query: 263 LKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHL 322 + + ++ +L+EL WREF + +P + + + + W D Sbjct: 70 AADAYAHGAAT-QADLDKFLSELGWREFGWTQLHHFPDLPR-RNLRHTLDGMPWRDDPAA 127 Query: 323 LQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLD 382 L AW++G TG+P +DA MR+L GWMHNR+RM+ ASFLVK LL+DWR GE +F L+D Sbjct: 128 LAAWRRGATGYPFVDAGMRELWATGWMHNRVRMVCASFLVKHLLIDWRAGEAWFWDTLVD 187 Query: 383 GDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHA 442 D ASN WQW A G D+ PYFRIFNP QG++FDP G ++R W+PEL +P IH Sbjct: 188 ADAASNAANWQWVAGCGADAAPYFRIFNPVAQGRKFDPDGAYVRRWVPELAGLPPATIHE 247 Query: 443 PHSWLDKN------DLSLNYPLPIVDHKKACHHTLNQYYAAK 478 P + L YPLPIV H A L+ + A + Sbjct: 248 PWAAPGAQLAAAGVRLGETYPLPIVAHDAARRRALDAFGAIR 289 >gi|40063354|gb|AAR38165.1| deoxyribodipyrimidine photolyase family protein [uncultured marine bacterium 580] Length = 478 Score = 263 bits (672), Expect = 5e-68, Method: Composition-based stats. Identities = 104/485 (21%), Positives = 189/485 (38%), Gaps = 34/485 (7%) Query: 8 SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67 ++VWL+ DLR+TD+ LY A D + + ++I P R FI SL Sbjct: 4 KTNIVWLKRDLRLTDHAPLYEAT-CRDEQFLVLYIYEPSLINDSHTDERHWRFIQQSLSV 62 Query: 68 VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEV-RRDKLLEKR 126 ++K L+++ + ++ + Q +T +F + + + RDK L+K Sbjct: 63 MEKILAKQSKQLSI----AYGEADQIFSEIINQHEITNVFSHEETGLKLTYERDKKLKKI 118 Query: 127 L-QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185 ++ + + +++ + K + + + +L + + Sbjct: 119 FNAKKIQWHEYQTN------AVIRGLNNRKTWEKQWNKVMREEIKTINLAEANIISHNFP 172 Query: 186 GPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS-- 243 P P G + F + + Y + P TS Sbjct: 173 NYSIPKFRNDLN---------YQPGGCLPGQKEMHDFFETRGQDYFKFISKPDRSRTSCS 223 Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCM 303 +LSPY++ G LS R+ + L + + + A S + L W + + Sbjct: 224 RLSPYIAYGNLSMREVYQTLLKSWNKTGWRRSMAALS--SRLHWHCHFIQKYESEIDI-E 280 Query: 304 GKPFIPWTEKIEW---NKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASF 360 P + + N + AW G TG+P+IDA+MR L G+++ R+R + SF Sbjct: 281 DLPINRGYKDFPYKVINCEHEDFLAWANGETGYPLIDASMRALKKTGYLNFRMRAMVVSF 340 Query: 361 LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDP 420 ++ W++ ++ + LD + + Q G + RI+NP+ Q + DP Sbjct: 341 ACHYFMIHWKLVAKHLATLFLDFEPGIHYPQIQMQ--AGVTGINTIRIYNPSKQLQDHDP 398 Query: 421 QGTFIRHWLPELNNVPTQYIHA-PHSWLDKNDLSLN-YPLPIVDHKKACHHTLNQYYAAK 478 FIR W+ EL++ +YI P D S N YP P D + + N + K Sbjct: 399 DTKFIRDWIDELSDQDKEYILGLPDDNFDLFSNSQNFYPTPAYDFFERTKYAKNLLWQWK 458 Query: 479 KQSLL 483 K SL+ Sbjct: 459 KSSLV 463 >gi|172058092|ref|YP_001814552.1| DASH family cryptochrome [Exiguobacterium sibiricum 255-15] gi|171990613|gb|ACB61535.1| cryptochrome, DASH family [Exiguobacterium sibiricum 255-15] Length = 400 Score = 263 bits (672), Expect = 5e-68, Method: Composition-based stats. Identities = 123/419 (29%), Positives = 194/419 (46%), Gaps = 29/419 (6%) Query: 10 HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69 +VW R DLR+ D++AL AC + V AVF+ + G +Q F +L + Sbjct: 3 GVVWYRKDLRVDDHEALTRACEE-EKIVRAVFV----RQTADGRGKQQMTFEEETLQSLN 57 Query: 70 KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH 129 + L Q GI Q +E L S+ + V ++++R E R+++ ++KR Sbjct: 58 EHLVQLGIELTILQGET----VEQLTSFIQPEDV--VYFHRMTGEYEARQEQEVQKRFNT 111 Query: 130 RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189 R+ ++ L I + ++ +V+T FRK + Q+ A+ P + P T Sbjct: 112 RM----YETQTLHLRDDI--GSDELKRVFTAFRKRVEQDGRFAEPIEAPGNIQYIELPQT 165 Query: 190 PSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYL 249 +P F GE + L + ++ ++ Y E R+ + +S+LS +L Sbjct: 166 RGGYDPRTAFP-------FIGGEAAGRNRLAAYLEQPIFTYKETRNGFNVDDSSKLSAWL 218 Query: 250 SIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIP 309 + G LSPR+ L+ + + EL+WR+F+ M + Sbjct: 219 ANGSLSPRRVMAELQRTEQE--HGANESTYWLYFELLWRDFFHLTMRETGHRLFRSNGLK 276 Query: 310 WTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDW 369 + W D + +W G TG P +DA MR++ GWM NR R ITAS+L+ DL DW Sbjct: 277 DGR-LTWKTDQAAIDSWMAGETGEPFVDAFMREIKDTGWMSNRGRQITASYLIHDLKQDW 335 Query: 370 RIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHW 428 RIG YF QL+D D+ASN G W + A GN + FNP Q +++DP FIR W Sbjct: 336 RIGARYFEQQLIDYDVASNYGNWAYIAGVGNATRTPR--FNPEFQQQKYDPNRAFIRRW 392 >gi|167911767|ref|ZP_02498858.1| deoxyribodipyrimidine photolyase [Burkholderia pseudomallei 112] Length = 288 Score = 263 bits (672), Expect = 5e-68, Method: Composition-based stats. Identities = 113/282 (40%), Positives = 154/282 (54%), Gaps = 8/282 (2%) Query: 203 AIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNR 262 + + GE A LR F ++ Y +RD P I TS+LSPY+ G LS RQ W+ Sbjct: 9 GLRDAWRFGEDAAHRRLRAFVDSRLGGYAAERDRPGIASTSRLSPYVRFGNLSARQLWHA 68 Query: 263 LKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHL 322 + + ++ +L+EL WREF + +P + + + + W D Sbjct: 69 AADAYAHGAAT-QADLDKFLSELGWREFGWTQLHHFPDLPR-RNLRHTLDGMPWRDDPAA 126 Query: 323 LQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLD 382 L AW++G TG+P +DA MR+L GWMHNR+RM+ ASFLVK LL+DWR GE +F L+D Sbjct: 127 LAAWRRGATGYPFVDAGMRELWATGWMHNRVRMVCASFLVKHLLIDWRAGEAWFWDTLVD 186 Query: 383 GDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHA 442 D ASN WQW A G D+ PYFRIFNP QG++FDP G ++R W+PEL +P IH Sbjct: 187 ADAASNAANWQWVAGCGADAAPYFRIFNPVAQGRKFDPDGAYVRRWVPELAGLPPATIHE 246 Query: 443 PHSWLDKN------DLSLNYPLPIVDHKKACHHTLNQYYAAK 478 P + L YPLPIV H A L+ + A + Sbjct: 247 PWAAPGAQLAAAGVRLGETYPLPIVAHDAARRRALDAFGAIR 288 >gi|300778230|ref|ZP_07088088.1| possible deoxyribodipyrimidine photo-lyase [Chryseobacterium gleum ATCC 35910] gi|300503740|gb|EFK34880.1| possible deoxyribodipyrimidine photo-lyase [Chryseobacterium gleum ATCC 35910] Length = 432 Score = 263 bits (671), Expect = 6e-68, Method: Composition-based stats. Identities = 111/440 (25%), Positives = 188/440 (42%), Gaps = 25/440 (5%) Query: 4 TTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISAR-----QS 58 ++++W DLR D+++LY D +AVF+ + + Q R ++ Sbjct: 2 PKKQKINILWFTKDLRTRDSESLYNIMQE-DLPFLAVFVFDSDLFAQKQFGFRKIGKYRA 60 Query: 59 HFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVR 118 F+ S+ +++ L++K I Q + + + + K+F +++ E Sbjct: 61 RFLLESIEDLKQRLAKKNIPLLVRQNKTEN----VFEEIAKEFEIVKIFCQQEWTKEETD 116 Query: 119 RDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLP 178 + K + + KS+ LL P + ++ ++T FR + +NL+ Sbjct: 117 LQTKIRKTVPYAFWEKSY-SQFLLHPFFVCKVLDKIPDLFTTFRNKIEKNLLIRPEFETE 175 Query: 179 VPAIRLTGPVTPSNIPRFFDYPFQAIDPM------FPIGEQNALHILRKFCKEKVY--YY 230 + S+ F+ D FP GE L L + E + Y Sbjct: 176 QLICYKSEIHFESDKITLRSLGFEDFDTDARSAFPFPGGETEGLRRLHSYFPETQHLSRY 235 Query: 231 VEQRD-IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWRE 289 E R+ + + +S+ SP+LS G LS ++ +K + + EL+WR+ Sbjct: 236 KETRNGLVGTEYSSKFSPWLSCGSLSAVTIYHEIKR--FEKKFGSNESTYWLFFELLWRD 293 Query: 290 FYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWM 349 F+R++ + + K I + + L++ WK G T ++A M +L GWM Sbjct: 294 FFRYVSLQHKDLIFRKKGITH-RQYSASHHQELIRKWKNGETTSDFVNANMIELQKTGWM 352 Query: 350 HNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIF 409 NR R AS+ K L DWRIG YF L+D D+ SN G W + A GNDS R F Sbjct: 353 SNRGRQNAASYFCKTLNQDWRIGAAYFEEMLIDYDVHSNYGNWMYLAGVGNDSRN--RTF 410 Query: 410 NPTIQGKRFDPQGTFIRHWL 429 NP Q + +DP+ F R WL Sbjct: 411 NPERQAELYDPKQEFRRLWL 430 >gi|254468896|ref|ZP_05082302.1| deoxyribodipyrimidine photo-lyase [beta proteobacterium KB13] gi|207087706|gb|EDZ64989.1| deoxyribodipyrimidine photo-lyase [beta proteobacterium KB13] Length = 477 Score = 263 bits (671), Expect = 6e-68, Method: Composition-based stats. Identities = 96/480 (20%), Positives = 184/480 (38%), Gaps = 31/480 (6%) Query: 8 SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67 +++VWL+ DLR+ D++ LY A + I ++I P R FI SL Sbjct: 4 KINIVWLKRDLRLQDHEPLYRA-QEENIPFILLYIYEPSLILDPHYDKRHWRFIQESLED 62 Query: 68 VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEV-RRDKLLEKR 126 +Q L++ + +S++ + + + +F + + +N RDK + Sbjct: 63 IQLELAKNQNKLSI----AYGESVDIFNELSNRYDIQYVFSHEETGLNTTFERDKNVANF 118 Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 + + I S ++ + + + ++ + + L + I Sbjct: 119 FKRQNITWIESQS-----NGVIRGLQDRKTWDKAWARFMRDKTIKINPQKLNIIDIDFGE 173 Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIP--AIQGTSQ 244 PS F+ G A L F + Y + P + S+ Sbjct: 174 INIPS---------FEEDSNFQKGGMVEAQTTLEDFFSTRGQDYYKFISKPHKSRSSCSR 224 Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304 +S Y++ G +S RQ + ++ E + + + A S + + W + + Sbjct: 225 MSAYIAYGNISIRQIYQKILENWNRVGWRRSMAALS--SRIHWHCHFIQKFESECRI-EN 281 Query: 305 KPFIPWTEKIEW---NKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFL 361 + + + +++ +W G TGFP+IDA+MR L G+++ R R + SF Sbjct: 282 ETINKGYQNFPYLVEDEEHADFTSWLNGMTGFPLIDASMRALRYSGYINFRSRAMVVSFA 341 Query: 362 VKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQ 421 L + W++ + LD + + Q G + RI+NP Q DP+ Sbjct: 342 CHYLRIHWKLVAKALARLFLDFEPGIHYPQIQMQ--AGVTGINTIRIYNPKKQAMDHDPE 399 Query: 422 GTFIRHWLPELN-NVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQ 480 FI+ W+PELN + P I+ P D NYP + ++ + + + KK Sbjct: 400 AIFIKTWIPELNSHQPEYIINLPLQSNDLFSNESNYPQAQYNFQERIRESKDLLWQWKKS 459 >gi|229529162|ref|ZP_04418552.1| deoxyribodipyrimidine photolyase single-strand-specific [Vibrio cholerae 12129(1)] gi|229332936|gb|EEN98422.1| deoxyribodipyrimidine photolyase single-strand-specific [Vibrio cholerae 12129(1)] Length = 461 Score = 263 bits (671), Expect = 6e-68, Method: Composition-based stats. Identities = 112/432 (25%), Positives = 181/432 (41%), Gaps = 23/432 (5%) Query: 6 AMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFI---ATP---EQWRQHGISARQSH 59 + + L W NDLR+ DN L A D ++I ++ TP +Q + Sbjct: 2 SKKIGLYWFTNDLRVNDNPLLEQASQQVD-RLICLYCYPSITPFLARYAQQTQWGEAKKR 60 Query: 60 FIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRR 119 F+ +L + SLS G + + L Q +T ++ + +E + Sbjct: 61 FLNQTLADLDHSLSTLGQKLWVTPLLPY----QALRHLLTQVEITDIYVDAMAGSDERQA 116 Query: 120 DKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPV 179 + + I + S+L P + + +T FR V+ S P+ Sbjct: 117 IARIHQDFSCVHIHQQALHSLLSEP-QLPFALEALPSTFTQFR-----KQVETLSLSAPM 170 Query: 180 PAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNAL-HILRKFCKEKVYYYVEQRD-IP 237 R+ P+ D + F GEQ L H F Y E R+ + Sbjct: 171 GYPRVLPPIEQGWQLPLLDIVAEPNHSAFIGGEQAGLTHCQNYFSSMLPSCYKETRNGLD 230 Query: 238 AIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAF 297 + +++ SP+L++G +SP+ + L+ + + + EL+WRE++ Sbjct: 231 GMDYSTKFSPWLALGAVSPKTIYAMLQRY--EAVHGANDSTYWIFFELLWREYFYWYARR 288 Query: 298 YPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMIT 357 Y + I + + + + WK G T FPI++A MRQLN G+M NR R + Sbjct: 289 YGAKLFRFSGIGEKKPLT-SFYAQRFLQWKHGVTPFPIVNACMRQLNQTGYMSNRGRQLV 347 Query: 358 ASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKR 417 AS LV +L +DWR G YF +QL+D D+ SN G WQ+ A G D R FN Q Sbjct: 348 ASCLVHELGLDWRYGAAYFETQLMDYDVGSNWGNWQYLAGVGADPRGSRR-FNLEKQAHT 406 Query: 418 FDPQGTFIRHWL 429 +DP+G F+ W Sbjct: 407 YDPEGEFVAKWC 418 >gi|167739436|ref|ZP_02412210.1| deoxyribodipyrimidine photolyase [Burkholderia pseudomallei 14] Length = 280 Score = 262 bits (670), Expect = 7e-68, Method: Composition-based stats. Identities = 113/282 (40%), Positives = 154/282 (54%), Gaps = 8/282 (2%) Query: 203 AIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNR 262 + + GE A LR F ++ Y +RD P I TS+LSPY+ G LS RQ W+ Sbjct: 1 GLRDAWRFGEDAAHRRLRAFVDSRLGGYAAERDRPGIASTSRLSPYVRFGNLSARQLWHA 60 Query: 263 LKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHL 322 + + ++ +L+EL WREF + +P + + + + W D Sbjct: 61 AADAYAHGAAT-QADLDKFLSELGWREFGWTQLHHFPDLPR-RNLRHTLDGMPWRDDPAA 118 Query: 323 LQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLD 382 L AW++G TG+P +DA MR+L GWMHNR+RM+ ASFLVK LL+DWR GE +F L+D Sbjct: 119 LAAWRRGATGYPFVDAGMRELWATGWMHNRVRMVCASFLVKHLLIDWRAGEAWFWDTLVD 178 Query: 383 GDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHA 442 D ASN WQW A G D+ PYFRIFNP QG++FDP G ++R W+PEL +P IH Sbjct: 179 ADAASNAANWQWVAGCGADAAPYFRIFNPVAQGRKFDPDGAYVRRWVPELAGLPPATIHE 238 Query: 443 PHSWLDKN------DLSLNYPLPIVDHKKACHHTLNQYYAAK 478 P + L YPLPIV H A L+ + A + Sbjct: 239 PWAAPGAQLAAAGVRLGETYPLPIVAHDAARRRALDAFGAIR 280 >gi|229523842|ref|ZP_04413247.1| deoxyribodipyrimidine photolyase single-strand-specific [Vibrio cholerae bv. albensis VL426] gi|229337423|gb|EEO02440.1| deoxyribodipyrimidine photolyase single-strand-specific [Vibrio cholerae bv. albensis VL426] Length = 461 Score = 262 bits (670), Expect = 9e-68, Method: Composition-based stats. Identities = 113/432 (26%), Positives = 182/432 (42%), Gaps = 23/432 (5%) Query: 6 AMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFI---ATP---EQWRQHGISARQSH 59 + + L W NDLR+ DN L A D ++I ++ TP +Q S + Sbjct: 2 SKKIGLYWFTNDLRVNDNPLLEQASQQVD-RLICLYCYPSITPFLARYAQQTQWSEAKKW 60 Query: 60 FIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRR 119 F+ +L + SLS G + + L Q +T ++ + +E + Sbjct: 61 FLNQTLADLDHSLSTLGQKLWVTPLLPY----QALRHLLTQVEITDIYVDAMAGSDERQA 116 Query: 120 DKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPV 179 + + I + S+L P + + +T FR V+ S P+ Sbjct: 117 IARIHQDFSSVHIHQQALHSLLSEP-QLPFALEALPSTFTQFR-----KQVETLSLSAPM 170 Query: 180 PAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNAL-HILRKFCKEKVYYYVEQRD-IP 237 R+ P+ D + F GEQ L H F Y E R+ + Sbjct: 171 GYPRVLPPIEQGWQLPLMDIVTEPNHSAFIGGEQAGLTHCQNYFSSLLPSRYKETRNGLD 230 Query: 238 AIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAF 297 + +++ SP+L++G +SP+ + L+ + + + EL+WRE++ Sbjct: 231 GMDYSTKFSPWLALGAVSPKTIYAMLQRY--EAVHGANDSTYWIFFELLWREYFYWYARR 288 Query: 298 YPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMIT 357 Y + I + + + + WK G T FPI++A MRQLN G+M NR R + Sbjct: 289 YGAKLFRFSGIGEKKPLT-SFYAQRFLQWKHGVTPFPIVNACMRQLNQTGYMSNRGRQLV 347 Query: 358 ASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKR 417 AS LV +L +DWR G YF +QL+D D+ SN G WQ+ A G D R FN Q Sbjct: 348 ASCLVHELGLDWRYGAAYFETQLVDYDVGSNWGNWQYLAGVGADPRG-SRQFNLAKQTHT 406 Query: 418 FDPQGTFIRHWL 429 +DP+G F+ W Sbjct: 407 YDPKGEFVAKWC 418 >gi|167619333|ref|ZP_02387964.1| deoxyribodipyrimidine photolyase [Burkholderia thailandensis Bt4] Length = 311 Score = 262 bits (669), Expect = 1e-67, Method: Composition-based stats. Identities = 112/281 (39%), Positives = 151/281 (53%), Gaps = 8/281 (2%) Query: 203 AIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNR 262 + + GE A +LR F ++ Y +RD P I TS+LSPY+ G LS RQ W Sbjct: 32 GLRDAWRFGEDAAHSLLRAFVDSRLGGYATERDRPGIASTSRLSPYVRFGNLSVRQIWQA 91 Query: 263 LKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHL 322 + ++ +L+EL WREF + +P + + + + W D Sbjct: 92 AVDAHAH-RAATQADLDKFLSELGWREFCWAQLYRFPDLPR-RNLRHTLDGMPWRDDPAG 149 Query: 323 LQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLD 382 L AW++G TG+P +DA MR+L GWMHNR RM+ ASFLVK LL+DWR GE +F L+D Sbjct: 150 LAAWRRGATGYPFVDAGMRELWATGWMHNRARMVCASFLVKHLLIDWREGEAWFWDTLVD 209 Query: 383 GDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHA 442 D ASN WQW A G D+ PYFRIFNP QGK+FDP G ++R W+PEL +P IH Sbjct: 210 ADAASNAANWQWVAGCGADAAPYFRIFNPVAQGKKFDPDGAYVRRWVPELAGLPPAAIHE 269 Query: 443 PHSWLDKN------DLSLNYPLPIVDHKKACHHTLNQYYAA 477 P + L YP+P+V H A L+ + A Sbjct: 270 PWAAPPAQLAAAGVRLGDTYPVPVVAHDAARRRALDAFATA 310 >gi|310816072|ref|YP_003964036.1| deoxyribodipyrimidine photolyase [Ketogulonicigenium vulgare Y25] gi|308754807|gb|ADO42736.1| deoxyribodipyrimidine photolyase [Ketogulonicigenium vulgare Y25] Length = 478 Score = 261 bits (668), Expect = 1e-67, Method: Composition-based stats. Identities = 136/487 (27%), Positives = 202/487 (41%), Gaps = 40/487 (8%) Query: 8 SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67 + L WL D R DN AL AAC +D ++AVF Q A + +L Sbjct: 3 APGLFWLSRDFRFADNPALAAAC--TDGPLLAVFCVDDLLMSQ---GAASRWRLEQALRA 57 Query: 68 VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVR--RDKLLEK 125 +L ++ D I L + ++ + +R +D+L Sbjct: 58 FDAALRKRTGGRGVLVLRGEPDRI--LPALVQNTGAQRIH-QSDWPTAGMRAVQDRLRAA 114 Query: 126 RLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185 + +L P + + A Y+VYTPF +AL Q+ R P Sbjct: 115 LAPLGAGLELHGGHLLAHPAMLRSGAGTPYRVYTPFARALRQHGADRPGRDAPARITPCA 174 Query: 186 GPVTPSNIPRFFDYP------FQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAI 239 I P P G Q A L F + Y RD P Sbjct: 175 DDHQGLAIETLDLAPDMHRGRALLAKFALPAGAQQAEARLDTFLDQA-AVYPAGRDHPDQ 233 Query: 240 QGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYP 299 TS LS +L++G +SPR+ W + G +L+E+IWREF HL+ P Sbjct: 234 PATSNLSEHLALGEISPRRIW-AIASLRAAAEPALAPGITKFLSEVIWREFSWHLLIANP 292 Query: 300 SVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITAS 359 + +P+ + W + + L W+Q TG ++DA +R++ G MHNR+RM+ AS Sbjct: 293 DLPT-QPWRQEWSEFPWQQRTSALSRWEQAATGISLVDAGLREMRVTGRMHNRVRMVVAS 351 Query: 360 FLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFD 419 +L K ++ DWR+G ++F L D D A+N WQW A G D+ PYFRIFNP Q + FD Sbjct: 352 WLTKHMMTDWRLGLQHFADSLTDWDPAANAMNWQWVAGCGPDASPYFRIFNPVKQAEEFD 411 Query: 420 PQGTFIRHWL--------PE----LNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKAC 467 +G + R WL PE +++PT + A H D +D L + Sbjct: 412 KKGIYRRKWLAGFDGSAAPEAIAYHDSLPTDWHVARHWREDASDERL---------RGGR 462 Query: 468 HHTLNQY 474 L+ Y Sbjct: 463 EAALDAY 469 >gi|302745156|gb|ADL62681.1| criptochrome 2a [Phreatichthys andruzzii] Length = 488 Score = 261 bits (668), Expect = 2e-67, Method: Composition-based stats. Identities = 90/301 (29%), Positives = 136/301 (45%), Gaps = 17/301 (5%) Query: 194 PRFFDYPFQ---AIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGT----SQLS 246 P + F ++P GE AL + + + K + +R + LS Sbjct: 45 PSLEELGFDIEGLPSAVWPGGETEALTRIERHLERKAWVANFERPRMNANSLLASPTGLS 104 Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP 306 PYL G LS R + +L + + + K + S +L+WREF+ P + Sbjct: 105 PYLRFGCLSCRLFYFKLTDLYRKVK-KTNTPPLSLYGQLLWREFFYTAATSNPRFDKMEG 163 Query: 307 FIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK-DL 365 P +I W+K+ L W + TGFP IDA M QL GW+H+ R A FL + DL Sbjct: 164 -NPICVRIPWDKNPEALAKWAEAKTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDL 222 Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425 + W G + F LLD D + N G W W S + +F + P G+R DP G FI Sbjct: 223 WISWEEGMKVFEELLLDADWSVNAGSWMW-LSCSSFFQQFFHCYCPVGFGRRTDPNGDFI 281 Query: 426 RHWLPELNNVPTQYIHAPHSWLD------KNDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479 R +LP L P +YI+ P + D K + ++YP P+V+H +A + + + Sbjct: 282 RRYLPILRGFPAKYIYDPWNAPDSVQAAAKCIIGVHYPKPMVNHAEASRLNIERMKQIYQ 341 Query: 480 Q 480 Q Sbjct: 342 Q 342 >gi|167581248|ref|ZP_02374122.1| deoxyribodipyrimidine photolyase [Burkholderia thailandensis TXDOH] Length = 311 Score = 261 bits (668), Expect = 2e-67, Method: Composition-based stats. Identities = 112/281 (39%), Positives = 152/281 (54%), Gaps = 8/281 (2%) Query: 203 AIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNR 262 + + GE A +LR F ++ Y +RD P I TS+LSPY+ G LS RQ W+ Sbjct: 32 GLRDAWRFGEDAAHSLLRAFVDSRLGGYATERDRPGIASTSRLSPYVRFGNLSVRQIWHA 91 Query: 263 LKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHL 322 + ++ +L+EL WREF + +P + + + + W D Sbjct: 92 AVDAHAH-RAATQADLDKFLSELGWREFCWAQLYRFPDLPR-RNLRHTLDGMPWRDDPAG 149 Query: 323 LQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLD 382 L AW++G TG+P +DA MR+L GWMHNR RM+ ASFLVK LL+DWR GE +F L+D Sbjct: 150 LAAWRRGATGYPFVDAGMRELWATGWMHNRARMVCASFLVKHLLIDWREGEAWFWDTLVD 209 Query: 383 GDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHA 442 D ASN WQW A G D+ PYFRIFNP QGK+FDP G ++R W+PEL +P IH Sbjct: 210 ADAASNAANWQWVAGCGADAAPYFRIFNPVAQGKKFDPDGAYVRRWVPELAGLPPAAIHE 269 Query: 443 PHSWLDKN------DLSLNYPLPIVDHKKACHHTLNQYYAA 477 P + L YP+P+V H A L+ + A Sbjct: 270 PWAAPPAQLAAAGVRLGDTYPVPVVAHDAARRRALDAFATA 310 >gi|83642974|ref|YP_431409.1| deoxyribodipyrimidine photolyase [Hahella chejuensis KCTC 2396] gi|83631017|gb|ABC26984.1| Deoxyribodipyrimidine photolyase [Hahella chejuensis KCTC 2396] Length = 491 Score = 261 bits (668), Expect = 2e-67, Method: Composition-based stats. Identities = 117/490 (23%), Positives = 196/490 (40%), Gaps = 32/490 (6%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M+V +VW + DLR+TD+ LY A V +++A PE W Q R+ F+ +L Sbjct: 1 MTVRVVWFKRDLRVTDHGPLYHAAR--QGPVAPLYVAEPEYWAQPDAGERRWGFVRETLQ 58 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEV-RRDKLLEK 125 ++ ++LS+ G + D I L+ + V +L+ +++ + RR++++ + Sbjct: 59 ELDQTLSKLGQPLWFMH----DSMINVLEYLKDRFGVFELYSHQETGVQWCNRRNQIVRE 114 Query: 126 RLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185 + + P +L A + ++ + Q + + L Sbjct: 115 WCRRNGVLWREW-----PVCGVLRRATAAERWQAAWKDFMAQTRYPSPKSLPMLGTSPLK 169 Query: 186 GPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAI--QGTS 243 P I Q L+ F + + Y PA +G S Sbjct: 170 PEAWPETIGADPTPCVLRQAGGRAAAAQE----LKSFLQTRGINYFRDTHYPATSFEGGS 225 Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFS----WLNELIWREFYRHLMAFYP 299 +LSPYLS GV+S R+ + + + +L+ L R Y M P Sbjct: 226 RLSPYLSHGVISLREAVQQSRRALQIYHTHRSADWVKSMTEFLSRLYLRSHYMQQMEDEP 285 Query: 300 SVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITAS 359 + + E D +AWK G TGFP+IDAAM+ L GW++ +LR + S Sbjct: 286 GMESINLHKSFNGLREHQFDEAKFEAWKNGETGFPLIDAAMKALINYGWINYQLRGLLMS 345 Query: 360 FLVKDLLVDWRIGEEYFMSQLLDGDLASNNG-GWQWAASTGNDSVPYFRIFNPTIQGKRF 418 F L + WR + D D A + Q+A +TG +I+NP + R Sbjct: 346 FAANQLWLHWREPALHMARLSTDYDPAVHFPLTQQFAGTTGMFEQ---KIYNPVTESHRL 402 Query: 419 DPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDL------SLNYPLPIVDHKKACHHTLN 472 DP G FIR L V Y+HAP + +YP+PI++++ A Sbjct: 403 DPAGKFIRAECSALREVSDAYLHAPWKMPHAEQIMSGCVLGQDYPMPIINNEDASLIAGQ 462 Query: 473 QYYAAKKQSL 482 + A ++ L Sbjct: 463 RLKAHLEERL 472 >gi|167825044|ref|ZP_02456515.1| deoxyribodipyrimidine photolyase [Burkholderia pseudomallei 9] Length = 279 Score = 261 bits (667), Expect = 2e-67, Method: Composition-based stats. Identities = 113/278 (40%), Positives = 153/278 (55%), Gaps = 8/278 (2%) Query: 207 MFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEE 266 + GE A LR F ++ Y +RD P I TS+LSPY+ G LS RQ W+ + Sbjct: 4 AWRFGEDAAHRRLRAFVDSRLGGYAAERDRPGIASTSRLSPYVRFGNLSARQLWHAAADA 63 Query: 267 FVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAW 326 + ++ +L+EL WREF + +P + + + + W D L AW Sbjct: 64 YAHGAAT-QADLDKFLSELGWREFGWTQLHHFPDLPR-RNLRHTLDGMPWRDDPAALAAW 121 Query: 327 KQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLA 386 ++G TG+P +DA MR+L GWMHNR+RM+ ASFLVK LL+DWR GE +F L+D D A Sbjct: 122 RRGATGYPFVDAGMRELWATGWMHNRVRMVCASFLVKHLLIDWRAGEAWFWDTLVDADAA 181 Query: 387 SNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSW 446 SN WQW A G D+ PYFRIFNP QG++FDP G ++R W+PEL +P IH P + Sbjct: 182 SNAANWQWVAGCGADAAPYFRIFNPVAQGRKFDPDGAYVRRWVPELAGLPPATIHEPWAA 241 Query: 447 LDKN------DLSLNYPLPIVDHKKACHHTLNQYYAAK 478 L YPLPIV H A L+ + A + Sbjct: 242 PGAQLAAAGVRLGETYPLPIVAHDAARRRALDAFGAIR 279 >gi|167720442|ref|ZP_02403678.1| deoxyribodipyrimidine photolyase [Burkholderia pseudomallei DM98] Length = 272 Score = 261 bits (667), Expect = 2e-67, Method: Composition-based stats. Identities = 113/274 (41%), Positives = 152/274 (55%), Gaps = 8/274 (2%) Query: 211 GEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDL 270 GE A LR F ++ Y +RD P I TS+LSPY+ G LS RQ W+ + + Sbjct: 1 GEDAAHRRLRAFVDSRLGGYAAERDRPGIASTSRLSPYVRFGNLSARQLWHAAADAYAHG 60 Query: 271 LIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGY 330 ++ +L+EL WREF + +P + + + + W D L AW++G Sbjct: 61 AAT-QADLDKFLSELGWREFGWTQLHHFPDLPR-RNLRHTLDGMPWRDDPAALAAWRRGA 118 Query: 331 TGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNG 390 TG+P +DA MR+L GWMHNR+RM+ ASFLVK LL+DWR GE +F L+D D ASN Sbjct: 119 TGYPFVDAGMRELWATGWMHNRVRMVCASFLVKHLLIDWRAGEAWFWDTLVDADAASNAA 178 Query: 391 GWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKN 450 WQW A G D+ PYFRIFNP QG++FDP G ++R W+PEL +P IH P + Sbjct: 179 NWQWVAGCGADAAPYFRIFNPVAQGRKFDPDGAYVRRWVPELAGLPPATIHEPWAAPGAQ 238 Query: 451 ------DLSLNYPLPIVDHKKACHHTLNQYYAAK 478 L YPLPIV H A L+ + A + Sbjct: 239 LAAAGVRLGETYPLPIVAHDAARRRALDAFGAIR 272 >gi|229520286|ref|ZP_04409712.1| deoxyribodipyrimidine photolyase single-strand-specific [Vibrio cholerae TM 11079-80] gi|229342652|gb|EEO07644.1| deoxyribodipyrimidine photolyase single-strand-specific [Vibrio cholerae TM 11079-80] Length = 461 Score = 261 bits (667), Expect = 2e-67, Method: Composition-based stats. Identities = 110/432 (25%), Positives = 179/432 (41%), Gaps = 23/432 (5%) Query: 6 AMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFI---ATP---EQWRQHGISARQSH 59 + + L W NDLR+ DN L A D ++I ++ TP +Q + Sbjct: 2 SKKIGLYWFTNDLRVNDNPLLEQASQQVD-RLICLYCYPSITPFLARYAQQTQWGEAKKR 60 Query: 60 FIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRR 119 + +L + SLS G + + L Q +T ++ +E + Sbjct: 61 VLNQTLADLDHSLSTLGQKLWVTPLLPY----QALRHLLTQVEITDIYVEAMAGSDERQA 116 Query: 120 DKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPV 179 + + I + S+L P + + +T FR V+ S P+ Sbjct: 117 IARIHQDFSSVHIHQQALHSLLSEP-QLPFALEALPSTFTQFR-----KQVETLSLSAPM 170 Query: 180 PAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNAL-HILRKFCKEKVYYYVEQRD-IP 237 R+ P+ D + F GEQ L H F Y E R+ + Sbjct: 171 GYPRVLPPIEQGWQLPLLDIVAEPNHSAFIGGEQAGLTHCQNYFSSLLPSRYKETRNGLD 230 Query: 238 AIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAF 297 + +++ SP+L++G +SP+ + L+ + + + EL+WRE++ Sbjct: 231 GMDYSTKFSPWLALGAVSPKTIYAMLQRY--EAVHGANDSTYWIFFELLWREYFYWYARR 288 Query: 298 YPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMIT 357 Y + I + + + + WK G T FPI++A MRQLN G+M NR R + Sbjct: 289 YGAKLFRFSGIGEKKPLT-SFYAQRFLQWKHGETPFPIVNACMRQLNQTGYMSNRGRQLV 347 Query: 358 ASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKR 417 A+ LV +L +DWR G YF +QL+D D+ SN G WQ+ A G D R FN Q Sbjct: 348 ATCLVHELGLDWRYGAAYFETQLVDYDVGSNWGNWQYLAGVGADPRG-SRQFNLEKQAHT 406 Query: 418 FDPQGTFIRHWL 429 +DP+G F+ W Sbjct: 407 YDPKGEFVAKWC 418 >gi|89075135|ref|ZP_01161571.1| deoxyribodipyrimidine photolyase [Photobacterium sp. SKA34] gi|89049089|gb|EAR54655.1| deoxyribodipyrimidine photolyase [Photobacterium sp. SKA34] Length = 443 Score = 260 bits (665), Expect = 3e-67, Method: Composition-based stats. Identities = 113/426 (26%), Positives = 186/426 (43%), Gaps = 17/426 (3%) Query: 10 HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATP--EQWRQH---GISARQSHFIYAS 64 L W NDLR+ DN L+ A + D+ ++ V+ P +Q+ ++ + + F+ + Sbjct: 5 ALYWFTNDLRLHDNPILHQAYEHCDS-LLCVYFMEPKKQQFNRYQLISVGEIRHRFLLQA 63 Query: 65 LLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLE 124 L +Q +L+ G Q Q + ++ +R E ++ L+ Sbjct: 64 LQALQSNLATLGQRLLVMQADPMVSM----PVLIEQYGINLIYRSRHCGWYEQQQWCYLK 119 Query: 125 KRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL 184 + H + D L + L M K Y+ FRK + QN+ + +P Sbjct: 120 QCYPH-LRFVEVDTHTLYSQDQLPFPLLDMPKSYSKFRKQIEQNVTVSSPILVPDYLPPQ 178 Query: 185 TGPVTPSNIPRFFDYPFQAIDPMFPIGEQNAL-HILRKFCKEKVYYYVEQRDIP-AIQGT 242 + + + GE AL H+ + F Y E R+ + Sbjct: 179 PNVFCSEYLDIRHVHISDNDQVEWHGGENAALMHLQQYFSSRLPSSYKETRNAIEGWNNS 238 Query: 243 SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVC 302 ++ SP+L+ G +S + RL++ + + S + EL+WREF+ A Sbjct: 239 TKFSPWLACGAISAKMIMARLQDY--EKYKEKNSSTYWIFFELLWREFF-QWHAHAVGRD 295 Query: 303 MGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLV 362 + + +++ + + W +G T +PI++A M+QLN G+M NR R I AS LV Sbjct: 296 LYRFSGVQNKRLLNSFYPTRFKQWCEGSTPYPIVNAFMKQLNQTGYMSNRGRQIVASCLV 355 Query: 363 KDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQG 422 +L VDWR G YF QL+D D+A+N G WQ+ A G DS R F+ Q + FDP Sbjct: 356 NELSVDWRYGAAYFEQQLIDHDVAANWGNWQYIAGVGTDSREK-RWFDLEKQTRIFDPNH 414 Query: 423 TFIRHW 428 FIRHW Sbjct: 415 HFIRHW 420 >gi|119476543|ref|ZP_01616894.1| Deoxyribodipyrimidine photolyase [marine gamma proteobacterium HTCC2143] gi|119450407|gb|EAW31642.1| Deoxyribodipyrimidine photolyase [marine gamma proteobacterium HTCC2143] Length = 444 Score = 260 bits (664), Expect = 4e-67, Method: Composition-based stats. Identities = 106/447 (23%), Positives = 177/447 (39%), Gaps = 22/447 (4%) Query: 8 SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIAT-----PEQWRQHGISARQSHFIY 62 V L W +DLRI DN L A D +I ++ A P + +S R+ F++ Sbjct: 3 KVGLFWFNHDLRIDDNATLLRAAAEVDT-LICLYCADTAKTGPGSRQPAELSLRRREFLF 61 Query: 63 ASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKL 122 SL ++ L++ G +E + V+ ++ + E + Sbjct: 62 ESLQDLEAQLNRHGQKLVVR----IQPPLEAIAQLITVHNVSHIYRSNHVGSYENTIWTI 117 Query: 123 LEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQN-----LVQADLRSL 177 L KR + L P + Q+ ++ FR+ + + + + Sbjct: 118 LRKRYGM-LTFTQCHTHTLFEPSQLPFAIDQLPSSFSKFRRVVEKMDINSGIAEPLPTPT 176 Query: 178 PVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILR-KFCKEKVYYYVEQRD- 235 +P L + + +F G L F + Y R+ Sbjct: 177 SLPKPALVADLAWQKRWHEYFTQSSDSPALFRGGASAGRRHLENYFGSRRASDYKATRNG 236 Query: 236 IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLM 295 + + +++ SP+L+ G LS R +L+ + + L EL+WRE+++ Sbjct: 237 LDGMDYSTKFSPWLANGSLSTRHIVRQLQ--GYEERAGANDSTYWILFELLWREYFQWYG 294 Query: 296 AFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRM 355 Y I + I + + W G T + II+A MRQLN G++ NR R Sbjct: 295 HKYQQRLFTFSGIGNSTPIT-SFYPERFKKWCVGNTPYAIINACMRQLNATGYLSNRGRQ 353 Query: 356 ITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQG 415 + AS V +L +DWR G YF QL+D D+ASN G WQ+ A G D + R F+ Q Sbjct: 354 LAASCFVHELGLDWRHGATYFEQQLVDYDVASNWGNWQYLAGVGADPRGH-RHFDLQKQA 412 Query: 416 KRFDPQGTFIRHWLPELNNVPTQYIHA 442 + +DP F+ W E + P + A Sbjct: 413 QIYDPDNHFVHRWAGEDSLQPLDSVDA 439 >gi|269961334|ref|ZP_06175699.1| conserved hypothetical protein [Vibrio harveyi 1DA3] gi|269833885|gb|EEZ87979.1| conserved hypothetical protein [Vibrio harveyi 1DA3] Length = 462 Score = 259 bits (663), Expect = 5e-67, Method: Composition-based stats. Identities = 108/430 (25%), Positives = 177/430 (41%), Gaps = 23/430 (5%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATP------EQWRQHGISARQSHF 60 ++ L W NDLR+ DN L A D +I ++ + ++ + F Sbjct: 15 KTIGLYWFTNDLRLHDNPLLLRASAEVD-LLICIYCYPKVSSYLKQYAQEPEFGFAKQQF 73 Query: 61 IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120 + SL + SL+ Q + + + + VT L+ + +E Sbjct: 74 LDESLHCLNLSLNALNQRLQVVDLHPY----QAIKHAADKLGVTHLYADAVAGSDEQDVV 129 Query: 121 KLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVP 180 ++ H + +S S L + + +T FRK + + + + ++ Sbjct: 130 DNIQAEAPHLAVIQSEVRS-LFCVEDLPFELEALPDTFTKFRKKVEKLALAEPVEAVTRL 188 Query: 181 AIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNAL-HILRKFCKEKVYYYVEQRD-IPA 238 G P+ +F GE+ L H + F Y + R+ + Sbjct: 189 PALPDGLALPT-----LSLTRDVQPSLFTGGERAGLEHCRQYFASTLASEYKQTRNGLDG 243 Query: 239 IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFY 298 + +++ SP+L+ G LSP+ + LK + + EL+WRE++ Y Sbjct: 244 MDYSTKFSPWLAHGCLSPKTIYAMLKRY--EAANGANDSTYWIYFELLWREYFYWYARRY 301 Query: 299 PSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITA 358 I + + +H Q WK+G T FPI++A M QLN G+M NR R + A Sbjct: 302 KRQLFRFGGIQNQAPLT-SFYAHRFQQWKKGETPFPIVNACMHQLNETGYMSNRGRQLVA 360 Query: 359 SFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRF 418 S LV +L ++WR G YF SQL+D D+ASN G WQ+ A G D R FN Q + + Sbjct: 361 SCLVHELGLEWRYGAAYFESQLVDYDVASNWGNWQYLAGVGADPRG-SRQFNLEKQTEMY 419 Query: 419 DPQGTFIRHW 428 DP FI W Sbjct: 420 DPHMEFIDRW 429 >gi|47215847|emb|CAG02310.1| unnamed protein product [Tetraodon nigroviridis] Length = 606 Score = 258 bits (660), Expect = 1e-66, Method: Composition-based stats. Identities = 96/415 (23%), Positives = 159/415 (38%), Gaps = 40/415 (9%) Query: 59 HFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVR 118 F+ L + +L + + + ++++L + E Sbjct: 20 RFLLQCLEDLDANLRKLNSRLFVIRG----QPANVFPRLFKEWKISRLTFEYDSEPFGKE 75 Query: 119 RDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLV-QADLRSL 177 RD ++K + + S L L+ +++ P Q L+ + D + Sbjct: 76 RDAAIKKLAKEAGVEVIVKISHTLY---DLDKIIELNGGQPPLTYKRFQTLISRMDPPEM 132 Query: 178 PVPAI------RLTGPVTPSN-----IPRFFDYPFQ---AIDPMFPIGEQNALHILRKFC 223 PV + R P++ + +P + F ++P GE AL + + Sbjct: 133 PVEMLSGNLMGRCVTPISEDHGEKFGVPSLEELGFDIEGLPSAVWPGGETEALTRIERHL 192 Query: 224 KEKVYYYVEQRDIPAIQGT----SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAF 279 + K + +R + LSPYL G LS R + +L + + + K S Sbjct: 193 ERKAWVANFERPRMNANSLLASPTGLSPYLRFGCLSCRLFYFKLTDLYRKVK-KNTSPPL 251 Query: 280 SWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAA 339 S +L+WREF+ P + P +I W+++ L W + TGFP IDA Sbjct: 252 SLYGQLLWREFFYTAATNNPRFDKMEG-NPICVRIPWDRNMEALAKWAEAKTGFPWIDAI 310 Query: 340 MRQLNTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAAST 398 M QL GW+H+ R A FL + DL + W G + F LLD D + N G W W S Sbjct: 311 MTQLRQEGWIHHLARHAVACFLTRGDLWISWEEGMKVFEELLLDADWSVNAGSWMW-LSC 369 Query: 399 GNDSVPYFRIFNPTIQGKRFDPQGTFIRHWL----------PELNNVPTQYIHAP 443 + +F + P G+R DP G FI L P + +P + P Sbjct: 370 SSFFQQFFHCYCPVGFGRRTDPNGDFISRSLLASSSDGGRSPSVRLLPRPALSTP 424 >gi|309779656|ref|ZP_07674415.1| deoxyribodipyrimidine photolyase [Ralstonia sp. 5_7_47FAA] gi|308921597|gb|EFP67235.1| deoxyribodipyrimidine photolyase [Ralstonia sp. 5_7_47FAA] Length = 476 Score = 258 bits (660), Expect = 1e-66, Method: Composition-based stats. Identities = 111/444 (25%), Positives = 190/444 (42%), Gaps = 29/444 (6%) Query: 4 TTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISAR----QSH 59 TA++ L W R+DLR+ D AL AAC + ++ V+ + + AR + Sbjct: 41 RTALNTVLFWFRSDLRLHDQPALRAACETGASHLVPVYCHADYEAQTPWGFARVGVHRRA 100 Query: 60 FIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRR 119 + A+L + + L+ G + L + + + E Sbjct: 101 VLAAALRDLARQLADLGTRL----VECCGPPGKVLPALARAVGASTVVCEDIAAPYEQ-- 154 Query: 120 DKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQ------------ 167 + + + ++ S L+ P + + V+T FR+AL + Sbjct: 155 -AEVAELRSAGLQVQTVWQSSLIDPLCLPWPVQSLPAVFTTFRQALERARIAPSTPLSPP 213 Query: 168 -NLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEK 226 L + P +R V + F P F GE L L ++ + + Sbjct: 214 TRLPPWPSGVIIPPGLRAPAYVANQTLSTDSRASFPYGTPEFDGGETAGLRHLAQYLERQ 273 Query: 227 -VYYYVEQRDIPA-IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNE 284 + Y R+ A + +S+ SP+L+ G LSPR+ + L++ + G++ E Sbjct: 274 LPHTYKRTRNALAGVDFSSKWSPWLATGALSPRRVISELQQ--FEQSHGQSDGSYWLWFE 331 Query: 285 LIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLN 344 L+WR+++R L + + + + D + W++ TG P++DAAMR+L Sbjct: 332 LLWRDYFRFLHLQHGARLYRARGLANEVRHAERPDVQGFERWRRASTGEPLVDAAMRELE 391 Query: 345 TIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVP 404 T G++ NRLR + AS+LV +L DWR G +F SQL+D D+ SN G W + A G D Sbjct: 392 TTGYLSNRLRQVVASYLVHELGGDWRAGAAWFESQLVDYDVYSNQGNWLYIAGRGTDPRG 451 Query: 405 YFRIFNPTIQGKRFDPQGTFIRHW 428 R FN Q +DP G+++R W Sbjct: 452 GRR-FNVRKQAAEYDPDGSYLRLW 474 >gi|90578157|ref|ZP_01233968.1| deoxyribodipyrimidine photolyase [Vibrio angustum S14] gi|90441243|gb|EAS66423.1| deoxyribodipyrimidine photolyase [Vibrio angustum S14] Length = 443 Score = 258 bits (659), Expect = 1e-66, Method: Composition-based stats. Identities = 111/426 (26%), Positives = 184/426 (43%), Gaps = 17/426 (3%) Query: 10 HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPE--QWRQH---GISARQSHFIYAS 64 L W NDLR+ DN L+ A + D+ ++ V+ P+ Q+ ++ + + F+ + Sbjct: 5 GLYWFTNDLRLHDNPILHQAYEHCDS-LLCVYFMEPQKQQFNRYQLVSVGEIRHRFLLQA 63 Query: 65 LLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLE 124 L +Q +L+ G Q Q + ++ +R E ++ + L+ Sbjct: 64 LQALQSNLATLGQRLLVMQADPMLSM----PVLIEQYGINLIYRSRHCGWYEQQQWRYLK 119 Query: 125 KRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL 184 + H + D L + M K Y+ FRK + QN+ + +P Sbjct: 120 QCYPH-LRFVEVDTHTLYSQDQLPFPLSDMPKSYSKFRKQIEQNVTVSSPLLVPDYLPPQ 178 Query: 185 TGPVTPSNIPRFFDYPFQAIDPMFPIGEQNAL-HILRKFCKEKVYYYVEQRDIP-AIQGT 242 + + + GE AL H+ + F Y E R+ + Sbjct: 179 PNVFCSDYLDIRHVHISDNDQVEWHGGENAALMHLQQYFSSSLPSNYKETRNAIEGWDNS 238 Query: 243 SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVC 302 ++ SP+L+ G LS + L + + + S + EL+WREF+ A Sbjct: 239 TKFSPWLACGALSAKMIMATLLDY--EKYKEKNSSTYWIFFELLWREFF-QWHAHAVGRD 295 Query: 303 MGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLV 362 + + +++ + + W +G T +PI++A M+QLN G+M NR R I AS LV Sbjct: 296 LYRFSGVQNKRLLNSFYPTRFKQWCEGSTPYPIVNAFMKQLNKTGYMSNRGRQIVASCLV 355 Query: 363 KDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQG 422 +L +DWR G YF QL+D D+A+N G WQ+ A G DS R F+ Q + FDP Sbjct: 356 NELSIDWRYGAAYFEQQLIDHDVAANWGNWQYIAGVGTDSREK-RWFDLEKQTRIFDPNH 414 Query: 423 TFIRHW 428 FIRHW Sbjct: 415 HFIRHW 420 >gi|50914603|ref|YP_060575.1| deoxyribodipyrimidine photolyase [Streptococcus pyogenes MGAS10394] gi|50903677|gb|AAT87392.1| Deoxyribodipyrimidine photolyase [Streptococcus pyogenes MGAS10394] Length = 368 Score = 258 bits (659), Expect = 1e-66, Method: Composition-based stats. Identities = 116/378 (30%), Positives = 171/378 (45%), Gaps = 16/378 (4%) Query: 2 KATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFI 61 + ++ V ++W R DLRI KAL A S + + VF EQ S QS FI Sbjct: 6 RRKGSVMVSVMWFRRDLRIDVQKALAHAIA-SQSPTLCVFQFNKEQLNLLH-SRNQSSFI 63 Query: 62 YASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDK 121 S+L +K L +GI + L T +++N RD+ Sbjct: 64 T-SVLAFRKLLKCEGIDLYLMYGDLMTCFEQLLTQLK---DWTDVYFNYDESGYGRLRDQ 119 Query: 122 LLEKRLQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVP 180 + + I ++ D L I+N + Q YKV+TP+ + + ++ Sbjct: 120 KAAQFFKKNGIAVHTYQDHYLHGSQEIINQSGQPYKVFTPYYRIWQNYPKETPIKVELSQ 179 Query: 181 AIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ 240 L + + + E A L +F ++++ Y RD PA Sbjct: 180 GRWLNLETPDDVLRTVESIKDEKYQDVATFDE--ASKQLNRFIQDQLAAYHANRDFPAQL 237 Query: 241 GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPS 300 GTS+LSP+L IG + R ++ +++ G ++L EL WR+FY + YP Sbjct: 238 GTSRLSPFLRIGAIGIRTVYHAVRQA------PNSLGQATFLKELAWRDFYNMVYVAYPD 291 Query: 301 VCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASF 360 +P +IEW + Q WK+G TG+PI+DAAM QL GWMHNRLRMI ASF Sbjct: 292 Q-KTQPIQKAFSQIEWVNNPDWFQLWKEGKTGYPIVDAAMLQLQKTGWMHNRLRMIVASF 350 Query: 361 LVKDLLVDWRIGEEYFMS 378 L KDLL DWR+GE+YF Sbjct: 351 LTKDLLCDWRLGEQYFQQ 368 >gi|89097604|ref|ZP_01170493.1| Deoxyribodipyrimidine photolyase [Bacillus sp. NRRL B-14911] gi|89087900|gb|EAR67012.1| Deoxyribodipyrimidine photolyase [Bacillus sp. NRRL B-14911] Length = 474 Score = 258 bits (658), Expect = 2e-66, Method: Composition-based stats. Identities = 119/478 (24%), Positives = 195/478 (40%), Gaps = 35/478 (7%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 +++VW R DLRI D++ L AC +++ +VI ++IA P + +S R F L Q+ Sbjct: 1 MNIVWFRKDLRIHDHRPLAEACASAE-EVIPLYIAEP-LSGRKEVSRRHIQFAAEGLEQL 58 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128 + L G Q + I+ L+ + LF++ +Y+ D+L + + Sbjct: 59 DEGLRGLGGRLFAAQGT----IIDILEELLKRYGDFSLFFHLEYD---TDTDRLAAEWMG 111 Query: 129 HRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQ---ADLRSLPVPAIRL 184 + + F PPG + K + FRK +++++ ++ VP Sbjct: 112 SKGLPFYPFH-----PPGQLEK-----PKSKSRFRKLWQESMLEELTDPPAAVRVPEKVP 161 Query: 185 TGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIP--AIQGT 242 +AI GE+ + L F E++ Y + P + + Sbjct: 162 DFLNLSVQKALGMKVKGEAIRFGQNGGEKRGIETLEFFIGEQLANYEKNYQKPLASSFSS 221 Query: 243 SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVC 302 S+LSPYL+ G +SPR ++ ++ + K + ++L+ R Sbjct: 222 SRLSPYLAYGNISPRLAYHEAAKKAENCTETEKQQLSLFQSKLLERSEALQWQEKETQAN 281 Query: 303 MGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLV 362 D+ LL+ W+ G TG P +DA+MR L GW++ R + A F Sbjct: 282 AADSNSARA------HDAELLEKWRTGNTGIPSVDASMRCLRKTGWLNYSSRRMLAGFAC 335 Query: 363 KDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQG 422 LL+DW LD + A + + G +I +P GK D G Sbjct: 336 NILLLDWEKAALELALLFLDHEPAVHMK--EMGILAGKSGSKTVKIIDPVKWGKELDTDG 393 Query: 423 TFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQ 480 +FIR ++PEL +V YIH P WL L YP PI D +KA Q KK Sbjct: 394 SFIRRYVPELKDVDAAYIHEP--WLYPGFFQLGYPAPICDVRKAIKQAKRQIEDQKKD 449 >gi|254431842|ref|ZP_05045545.1| deoxyribodipyrimidine photolyase [Cyanobium sp. PCC 7001] gi|197626295|gb|EDY38854.1| deoxyribodipyrimidine photolyase [Cyanobium sp. PCC 7001] Length = 554 Score = 258 bits (658), Expect = 2e-66, Method: Composition-based stats. Identities = 121/482 (25%), Positives = 188/482 (39%), Gaps = 30/482 (6%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M + +VW R DLR+ D+ AL+ A S+ V+ +FI P + + + +L Sbjct: 1 MRLQVVWFRRDLRLGDHPALHQAA--SEGAVLPLFILDPALLQHPETGVARVGVLLDNLA 58 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYE-INEVRRDKLLEK 125 + L Q + + L S R + + E I RD ++ Sbjct: 59 ALDHELKQLASRLLVR----WGEPAACLLSVVKAYRADAVLAHVDSERIVGRVRDARVQG 114 Query: 126 RLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185 +LQ + + + PPG + L Y Y F ++ L P Sbjct: 115 QLQQAGVPLRW----IEPPGGL--EELVPYPAYRRFWHGVMAAEPLPAPGRLLTPPP-AA 167 Query: 186 GPVTPSNIPRFFDYPF-QAIDPMFPIGEQNALHILRKFCKEKV-YYYVEQRDIPAIQGTS 243 G T + +P P P G AL L+ FC+++V Y Q PA + +S Sbjct: 168 GESTAAAVPSLEALGMVDDGKPRPPGGSAAALQRLQAFCRQEVSSRYYWQLSYPAARASS 227 Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCM 303 +SPYL GVLS RQC + + ++ L W + P + + Sbjct: 228 GISPYLKFGVLSHRQCLRAI-APLRRGDAGRQRSWRQLVSRLRWGAGMAQRFRYLPQLEL 286 Query: 304 GKPFIPWT-EKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTI-GW--MHNRLRMITAS 359 + + + + + W++G TGFPI+DA R L GW ++ R R I AS Sbjct: 287 EPLWRCHRDDAVLRDTQEEMYLRWQEGRTGFPIVDAVSRCLLATGGWRDLNFRSRAIHAS 346 Query: 360 FLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVP-YFRIFNPTIQG-KR 417 FL +DWR G ++M LLDGD ++ W A + RI++P R Sbjct: 347 FLTNLCGIDWRYGALHYMRHLLDGDCPIDHYQWAMQAGVTAGGTGAWTRIYHPGQVAVNR 406 Query: 418 FDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477 DP G FIR WLPEL + + P + L+Y + A L A Sbjct: 407 CDPHGVFIRRWLPELAELTNDQLGLPPAMAAYPPPMLDY-------ETARRDRLRSLEAR 459 Query: 478 KK 479 ++ Sbjct: 460 RQ 461 >gi|119471065|ref|ZP_01613624.1| Deoxyribodipyrimidine photolyase [Alteromonadales bacterium TW-7] gi|119445905|gb|EAW27186.1| Deoxyribodipyrimidine photolyase [Alteromonadales bacterium TW-7] Length = 436 Score = 258 bits (658), Expect = 2e-66, Method: Composition-based stats. Identities = 108/426 (25%), Positives = 184/426 (43%), Gaps = 23/426 (5%) Query: 11 LVWLRNDLRITDNKALYA-ACHNSDAKVIAVFIATPEQW-----RQHGISARQSHFIYAS 64 L WL+NDLR+ DN A V VF+ P + +Q + F+ S Sbjct: 6 LYWLKNDLRLNDNPIFSKLALQQCALDV--VFVINPNWFKNTNYQQKQYGENKYTFLMQS 63 Query: 65 LLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLE 124 L ++Q++L +G + + + L +Q + ++ Y+ Q+ + E R LL+ Sbjct: 64 LYELQQALIARGQTLHVLEG----EPVSVLKQRIKEQHIDEVVYSEQFGVYEQREINLLK 119 Query: 125 KRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL 184 + L + + + K +TPF+K + + L + + Sbjct: 120 AHCPQ-IQFTGTLQDTLYQQNELPFNLTDLPKSFTPFKKKVEAANIPITLSHITTELLPK 178 Query: 185 TGPVTPSNIPRFFDYPFQAIDPMFPIGEQNAL-HILRKFCKEKVYYYVEQRD-IPAIQGT 242 + N +AI+ G +A H + F E Y R+ + T Sbjct: 179 PITLCAKNPIELP----KAINNSMHGGLTSAQKHCEQYFAGELPSTYKITRNALDGFDNT 234 Query: 243 SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVC 302 ++ SP+L+ G +S +Q +N + E + + EL+WRE+++ S Sbjct: 235 TKFSPWLAFGCISAKQIYNAV--EQYEQTYTANDSTYWIKFELLWREYFKWHALNVQSSL 292 Query: 303 MGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLV 362 T+ + + AW QG T +P+++A M++LN G++ NR R I AS LV Sbjct: 293 FSFKGQKQTKPLTTFM-PNRFAAWCQGTTPYPLVNAIMKELNATGFITNRSRQIVASCLV 351 Query: 363 KDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQG 422 +L +DWR G YF QL+D D+A+N G WQ+ A G D R FN Q ++FDP+ Sbjct: 352 NELGLDWRYGAAYFEQQLIDHDVAANWGNWQYIAGVGVDPRG-GRHFNIEKQTQQFDPKS 410 Query: 423 TFIRHW 428 + + W Sbjct: 411 IYTKKW 416 >gi|262275892|ref|ZP_06053701.1| deoxyribodipyrimidine photolyase single-strand-specific [Grimontia hollisae CIP 101886] gi|262219700|gb|EEY71016.1| deoxyribodipyrimidine photolyase single-strand-specific [Grimontia hollisae CIP 101886] Length = 427 Score = 257 bits (657), Expect = 3e-66, Method: Composition-based stats. Identities = 113/427 (26%), Positives = 181/427 (42%), Gaps = 22/427 (5%) Query: 10 HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQ-----HGISARQSHFIYAS 64 L W R+DLR+ DN AL ++ VF+ PE +R + + F+Y S Sbjct: 3 GLFWFRHDLRLADNPALITLSRRCSKALM-VFVINPEWFRPAHYQSRHLGRFREEFLYQS 61 Query: 65 LLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLE 124 L +++ L + + + + C + + + + E ++ L Sbjct: 62 LRSLERELKKHKQRLVVK----VGNPLLVIPDLCKKHGIDMVAMTDHPGVYERQQVAYLS 117 Query: 125 KRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL 184 + L+ V + L + ++ FRK + + + L +P+ A Sbjct: 118 RTLRSEVSVS--ESFTLFLRSQLAFDKTTYPATFSQFRKHVEKQNI---LPCIPISAPDS 172 Query: 185 TGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKV--YYYVEQR-DIPAIQG 241 V + F + GE + L +F + Y + R D+ Q Sbjct: 173 LPTVIDERRDIWGGQEFVYDLTPYHGGEDAGMVQLNQFFWKTQGLKNYKQTRNDLDGWQF 232 Query: 242 TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSV 301 +S+LS +L+ G +SPR L + + S EL+WRE+++ +M +Y + Sbjct: 233 SSRLSAWLANGSISPRTVAAEL--DNYEYRHGRSDSTQSMYAELLWREYFQWMMHYYGAD 290 Query: 302 CMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFL 361 I T + +AW+QG T FPI++A MRQLN G++ NR R I AS L Sbjct: 291 MFAFAGIKKTRPLT-TYYCQNYKAWEQGTTEFPIVNACMRQLNQTGYISNRGRQIVASCL 349 Query: 362 VKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQ 421 V +L VDWR G YF QL+D D+A+N G WQ+ A G D R FN Q +DP Sbjct: 350 VNELGVDWRFGAAYFEQQLIDFDVATNYGNWQYLAGVGADPRGQ-RHFNLEKQADVYDPN 408 Query: 422 GTFIRHW 428 G F+ W Sbjct: 409 GEFVERW 415 >gi|119945273|ref|YP_942953.1| DNA photolyase FAD-binding subunit [Psychromonas ingrahamii 37] gi|119863877|gb|ABM03354.1| DNA photolyase, FAD- binding- domain protein [Psychromonas ingrahamii 37] Length = 448 Score = 257 bits (656), Expect = 3e-66, Method: Composition-based stats. Identities = 116/436 (26%), Positives = 180/436 (41%), Gaps = 26/436 (5%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQW-----RQHGISARQSHFI 61 M L W+ DLRI DN AL A + +++ V++ + + + + + F+ Sbjct: 1 MKRTLYWVNKDLRINDNAALNLASKSD--RLLCVYVVDKQSFEANNFQSKPLGDIRWQFL 58 Query: 62 YASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDK 121 L +SLS+ G + D++ L C ++T + + E R Sbjct: 59 QGCLEDFNESLSKLGQAMHI----VYGDTLSTLMRLCESYQITDVITTKLPGTYENRLIT 114 Query: 122 LLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADL---RSLP 178 L +RL I + D L S+ ++ Y+ FRK + + ++ + +SLP Sbjct: 115 QLNERLPELTIDQ-VDQFTLFTKKSLPFELDELPISYSKFRKKMAEVIIPEPVSTVQSLP 173 Query: 179 VPAIRLTGP--VTPSNIPRFFDYPFQAIDPMFPIGEQNALHILR-KFCKEKVYYYVEQRD 235 L P P +P + F GEQ L LR F Y + R+ Sbjct: 174 SMFDTLPAPTRFKPEWLPTVSAIKAKQ-GFEFEGGEQQGLKHLRQYFSSNSPAEYKQVRN 232 Query: 236 -IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHL 294 + + +S+LSP+L+ G +S RQ N L E + S EL+WRE+Y+ Sbjct: 233 NLDGWKNSSKLSPWLNSGCISVRQVMNNLAE--FEQQHGKNSSTECLYLELLWREYYQ-- 288 Query: 295 MAFYPSVCMGKPFIPWTEKIEWNK-DSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRL 353 Y F + W G T + +++A M +L G++ NR Sbjct: 289 WVHYKVGAKTYQFKGLAKHRPLTTFYPERFNKWCLGNTPYSLVNAFMHELRQTGYLSNRG 348 Query: 354 RMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTI 413 R I AS LV +L VDWR G +F QL+D D A N G WQ+ A G D R FN Sbjct: 349 RQIVASCLVNELSVDWRYGAAWFEEQLIDYDAAVNWGNWQYIAGVGVDPRG-GRHFNIEK 407 Query: 414 QGKRFDPQGTFIRHWL 429 Q +DP G + W+ Sbjct: 408 QTTLYDPNGDYQAQWI 423 >gi|119502978|ref|ZP_01625063.1| Deoxyribodipyrimidine photolyase [marine gamma proteobacterium HTCC2080] gi|119461324|gb|EAW42414.1| Deoxyribodipyrimidine photolyase [marine gamma proteobacterium HTCC2080] Length = 433 Score = 257 bits (656), Expect = 4e-66, Method: Composition-based stats. Identities = 128/441 (29%), Positives = 197/441 (44%), Gaps = 27/441 (6%) Query: 10 HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIAT-PEQW-RQHGISARQSHFIYASLLQ 67 HL W RNDLR+ DN A+ A H + ++ V++ P W G+ A++ F+ SL + Sbjct: 3 HLHWFRNDLRLRDNPAI--ASHTAADSLLCVYLMPKPRPWCNLVGVGAQRERFLRESLQE 60 Query: 68 VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127 + L+++G + S L + +T++ E + L+++L Sbjct: 61 LHLQLAEQGQALMVLEGSPEL----VLPDLVARFAITEVSTTFTPGSQERKTLAYLDQKL 116 Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRS---LPVPAIRL 184 V + + L P + + KV++ FR+A+ + V+ S LP P Sbjct: 117 P--VPLQVHRGNSLFEPSDLPFELQDLPKVFSGFRRAVEKLNVRGPSPSTEVLPPPPAAQ 174 Query: 185 TGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFC--KEKVYYYVEQRD-IPAIQG 241 + P++I + P P G L LR+F + Y E R+ + A+ G Sbjct: 175 FDAIPPADISKPTMLP-------LPGGRSAGLRRLRQFVFDDRSITQYKETRNCLDALDG 227 Query: 242 TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSV 301 +S LSP+L+ G LS R+ + + + L + EL+WREF+ H A Sbjct: 228 SSTLSPWLANGNLSVREVAHEVFRFERENL--SNESTYWLFFELLWREFF-HWRAVVDDA 284 Query: 302 CMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFL 361 M K + D W G T FP+++A MRQL GWM NR R I AS L Sbjct: 285 QMFKIGGGSGKIRANTFDPRNFARWCAGDTNFPLVNALMRQLVATGWMSNRGRQIAASCL 344 Query: 362 VKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQ 421 + +L VDWR G +F L+D D+ SN G WQ+ A G+D R FN Q ++DPQ Sbjct: 345 INELKVDWRFGAAFFEKHLIDYDVGSNYGNWQYIAGVGSDPRG-GRHFNIDKQAGQWDPQ 403 Query: 422 GTFIRHWLPELNNVPTQYIHA 442 G F W + + P I A Sbjct: 404 GVFTAKWGGDRPSQPHYVIDA 424 >gi|254452890|ref|ZP_05066327.1| deoxyribodipyrimidine photolyase family protein [Octadecabacter antarcticus 238] gi|198267296|gb|EDY91566.1| deoxyribodipyrimidine photolyase family protein [Octadecabacter antarcticus 238] Length = 445 Score = 256 bits (655), Expect = 4e-66, Method: Composition-based stats. Identities = 97/416 (23%), Positives = 162/416 (38%), Gaps = 26/416 (6%) Query: 79 FQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYE-INEVRRDKLLEKRLQHRVICKSFD 137 H DS + + L V+ ++ + + + RD ++K Q+ I Sbjct: 4 LGQHLVVKVGDSCDVIKKLHLDHDVSHVYAHEETGNLWTYHRDIAVQKLCQNHRIA---- 59 Query: 138 DSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPSNIPRFF 197 + P + + L+ ++ R A + + +L + + N P F Sbjct: 60 --LHEAPTNGVVRRLRSRDDWSKIRNARMAKKILPKPNTLNSFPPCSSDTLPDKNDPIFG 117 Query: 198 DYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ--GTSQLSPYLSIGVLS 255 + P + G + A+ LR F + Y+ P S+LS +L+ G LS Sbjct: 118 NVPIGKVQ---KGGRKQAVADLRSFLNHRSRQYLYHISAPDSSEFHCSRLSAHLAWGTLS 174 Query: 256 PRQCWNRLKEEFVDLLIKPKSG----AFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWT 311 R+ + + L ++ + L WR + + P + P Sbjct: 175 VREVAQSIVKRRAQLSPDENKSFGRNLTAFGSRLAWRCHFIQKIEDQPEIETH-CMHPAF 233 Query: 312 EKIE-WNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWR 370 E + + QAW G TG+P +DA MR L GW+ R+R + SF L +DWR Sbjct: 234 EGLRVGEHNDLHFQAWASGQTGYPFVDACMRNLTAEGWITFRMRAMLVSFASYQLWLDWR 293 Query: 371 IGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLP 430 + E+ D + + Q +G + R++NP Q DP+GTFIR W+P Sbjct: 294 VTGEHLARLFTDYEPGIHYSQLQMQ--SGVTGINTMRVYNPIKQSMEHDPKGTFIRKWVP 351 Query: 431 ELNNVPTQYIHAPHSWL------DKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQ 480 EL +VP ++IH P W L +YP P+VD + Q A +K Sbjct: 352 ELKSVPDEFIHEPWKWEKTLIDDRDFTLGQDYPAPLVDQAVSAKAAKQQISAIRKN 407 >gi|213648432|ref|ZP_03378485.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp. enterica serovar Typhi str. J185] Length = 202 Score = 256 bits (654), Expect = 5e-66, Method: Composition-based stats. Identities = 132/201 (65%), Positives = 162/201 (80%) Query: 281 WLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAM 340 WLNELIWREFYRHLM +YP++C +PFI WT+++ W ++ H QAW++G TG+PI+DAAM Sbjct: 2 WLNELIWREFYRHLMTWYPALCKHQPFIRWTKRVAWQENPHYFQAWQKGETGYPIVDAAM 61 Query: 341 RQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGN 400 RQLN GWMHNRLRMITASFLVKDLL+DWR+GE YFMSQL+DGDLA+NNGGWQWAASTG Sbjct: 62 RQLNATGWMHNRLRMITASFLVKDLLIDWRLGERYFMSQLIDGDLAANNGGWQWAASTGT 121 Query: 401 DSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPI 460 D+ PYFRIFNPT Q +RFD G FIR WLP L ++P + IH P W +K + L+YP PI Sbjct: 122 DAAPYFRIFNPTTQRERFDRDGEFIRQWLPALRDIPGKAIHEPWRWAEKAGVVLDYPRPI 181 Query: 461 VDHKKACHHTLNQYYAAKKQS 481 V+HK+A TL+ Y AA+K + Sbjct: 182 VEHKQARIATLSAYEAARKGA 202 >gi|254227923|ref|ZP_04921353.1| Deoxyribodipyrimidine photolyase [Vibrio sp. Ex25] gi|262396094|ref|YP_003287947.1| deoxyribodipyrimidine photolyase single-strand-specific [Vibrio sp. Ex25] gi|151939419|gb|EDN58247.1| Deoxyribodipyrimidine photolyase [Vibrio sp. Ex25] gi|262339688|gb|ACY53482.1| deoxyribodipyrimidine photolyase single-strand-specific [Vibrio sp. Ex25] Length = 444 Score = 256 bits (653), Expect = 9e-66, Method: Composition-based stats. Identities = 114/430 (26%), Positives = 189/430 (43%), Gaps = 23/430 (5%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFI---ATP---EQWRQHGISARQSHF 60 + L W NDLR+ DN L AC D ++I ++ TP ++ + + F Sbjct: 3 KKIGLYWFTNDLRLHDNPLLIDACAEMD-ELICLYCRPSVTPYLQHFAQETSLGRAKLQF 61 Query: 61 IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120 + ASL ++ +SL++ G + + + + + +T ++ + +E + Sbjct: 62 LEASLNELNQSLAKLGQRLWTVELTPY----QAIKYAISHFGITHIYADAFAGSDEQQAL 117 Query: 121 KLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVP 180 + K H I K LL + Q+ +T FRK + + S+ Sbjct: 118 ERAIKGTPHVNI-KQQAIRTLLREEQLPFELRQLPATFTKFRKQVEGLDLSQPYESVHAL 176 Query: 181 AIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNAL-HILRKFCKEKVYYYVEQRD-IPA 238 +G P+ +FD P+F GE + L H R F Y + R+ + Sbjct: 177 PPVPSGMNFPTATTYYFD-----TKPVFDGGELSGLEHCRRYFASSLASEYKQTRNELDG 231 Query: 239 IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFY 298 ++ +++ SP+L+ G +SP + LK+ + + EL+WRE++ Y Sbjct: 232 MEYSTKFSPWLAHGCVSPTIIYAMLKQY--EQKNGANDSTYWIYFELLWREYFYWYARKY 289 Query: 299 PSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITA 358 I + + + + WK+G T FPI++A M QLN G+M NR R + A Sbjct: 290 QQKLFRFGGIANQPPLT-SFYAQRFKQWKKGETPFPIVNACMHQLNKTGYMSNRGRQLVA 348 Query: 359 SFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRF 418 S LV +L +DWR G YF +QL+D D+ SN G WQ+ A G D R FN Q + + Sbjct: 349 SCLVHELGLDWRYGAAYFETQLIDYDVGSNWGNWQYLAGVGADPRG-SRQFNLEKQTQTY 407 Query: 419 DPQGTFIRHW 428 DP +FI W Sbjct: 408 DPDFSFIDKW 417 >gi|254784878|ref|YP_003072306.1| deoxyribodipyrimidine photolyase [Teredinibacter turnerae T7901] gi|237684101|gb|ACR11365.1| deoxyribodipyrimidine photolyase [Teredinibacter turnerae T7901] Length = 447 Score = 255 bits (652), Expect = 1e-65, Method: Composition-based stats. Identities = 122/442 (27%), Positives = 190/442 (42%), Gaps = 21/442 (4%) Query: 1 MKATTAMS-VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQ-----HGIS 54 M A S V + W NDLRITDN AL A + + +I V+I P + + Sbjct: 1 MAAILPKSRVGVFWFSNDLRITDNAALNYAAQSCET-LICVYILDPRLYAPNRYGLRSMG 59 Query: 55 ARQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEI 114 + F+ SL Q+ L+ G + S + + Y + +RQ Sbjct: 60 PMRDRFLQESLAQLSVDLNAVGQTLLVLRESPLQAMAQLIGKYDPGL----VVRSRQAGF 115 Query: 115 NEVRRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHAL-QMYKVYTPFRKALIQNLVQAD 173 E ++ +L++R + + K L +L L + K ++ FRK + + Sbjct: 116 YEYKQWAMLQRRYR-LISFKDIATHTLFNDEDLLPFPLTDLPKTFSQFRKKVEPLADIRN 174 Query: 174 LRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILR-KFCKEKVYYYVE 232 L LPV + + + +F G + + L+ F Y Sbjct: 175 L--LPVCDLPPPPRGLKRDHTFRRELLKHQSRSIFKGGAEAGIQQLQGYFHTTAPSEYKT 232 Query: 233 QRD-IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFY 291 R+ + +++LSP+L+ G LS Q L E + + EL+WRE++ Sbjct: 233 VRNALDGWGNSTKLSPWLANGCLSVNQVLLALGEY--EAQYSANESTYWISFELLWREYF 290 Query: 292 RHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHN 351 + + + + I ++K+ S W +G T FP+++A M+QLN G+M N Sbjct: 291 QWSAYLHGARLFARDGINGSKKLNTFY-SQRFMQWCEGSTPFPLVNALMKQLNVTGYMSN 349 Query: 352 RLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNP 411 R R ITAS LV +L +DWR G YF QL+D D+ASN G WQ+ A G D R FN Sbjct: 350 RGRQITASCLVNELALDWRYGAAYFEQQLIDYDVASNWGNWQYIAGVGADPRG-GRHFNL 408 Query: 412 TIQGKRFDPQGTFIRHWLPELN 433 Q + FDP+G FI W E Sbjct: 409 DKQREIFDPEGDFIAKWGGESA 430 >gi|153831636|ref|ZP_01984303.1| cryptochrome dash [Vibrio harveyi HY01] gi|148872146|gb|EDL70963.1| cryptochrome dash [Vibrio harveyi HY01] Length = 450 Score = 254 bits (650), Expect = 2e-65, Method: Composition-based stats. Identities = 115/430 (26%), Positives = 181/430 (42%), Gaps = 23/430 (5%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFI---ATP---EQWRQHGISARQSHF 60 ++ L W NDLR+ DN L A DA +I V+ +P ++ + + F Sbjct: 3 KTIGLYWFTNDLRMHDNPLLTRASEEVDA-LICVYCYPKLSPFLAHFAQESMFGSAKQQF 61 Query: 61 IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120 + SL + SL+ Q + + + + VT L+ + E Sbjct: 62 LDESLHCLNLSLNAFDQRLQVVDLHPY----QAIKHAVEKLGVTHLYCDAFSGSEEQDVV 117 Query: 121 KLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVP 180 + + +H IC+ S L + + +T FRK + + ++ Sbjct: 118 DHIRQESEHLTICQQEVRS-LFTVEDLPFALEDLPDTFTKFRKKAEKVSLAEPFVTVTAL 176 Query: 181 AIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNAL-HILRKFCKEKVYYYVEQRD-IPA 238 + +G P+ +F GEQ L H R F Y + R+ + Sbjct: 177 PLTPSGLALPT-----LRLIRDVKPCLFTGGEQAGLEHARRYFSSTLASEYKQTRNGLDG 231 Query: 239 IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFY 298 + +++ SP+L+ G LSP+ + LK + L + EL+WRE++ + Sbjct: 232 MDYSTKFSPWLANGCLSPKTIYAMLKRY--ERLKGANESTYWIYFELLWREYFYWYARRH 289 Query: 299 PSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITA 358 I + + +H Q WK+G T FPI++A M QLN G+M NR R + A Sbjct: 290 KRQLFRFGGIQNQAPLT-SFYAHRFQQWKKGETPFPIVNACMHQLNETGYMSNRGRQLVA 348 Query: 359 SFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRF 418 S LV +L +DWR G YF SQL+D D+ASN G WQ+ A G D R FN Q + + Sbjct: 349 SCLVHELGLDWRYGAAYFESQLVDYDVASNWGNWQYLAGVGADPRG-SRQFNLEKQTEMY 407 Query: 419 DPQGTFIRHW 428 DP FI W Sbjct: 408 DPHMEFIDRW 417 >gi|156361145|ref|XP_001625380.1| predicted protein [Nematostella vectensis] gi|156212211|gb|EDO33280.1| predicted protein [Nematostella vectensis] Length = 463 Score = 254 bits (650), Expect = 2e-65, Method: Composition-based stats. Identities = 102/431 (23%), Positives = 150/431 (34%), Gaps = 29/431 (6%) Query: 6 AMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASL 65 S + WLR LRI DN AL A N V+I + I F+ +L Sbjct: 19 KTSHSIHWLRKGLRIHDNPALRDAVLNWGTF-RVVYILDTKSVASSNIGLNLWRFLLQAL 77 Query: 66 LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125 + SL + + + + +T+L + E RD + Sbjct: 78 EDLDDSLRKLNSRLFVIRG----QPADVFPRLFREWGITRLTFEEDSEPFGKERDSAICM 133 Query: 126 RLQH-RVICKSFDDSVLLPPGSILNHALQ-MYKVYTPFRKALIQNLVQADLRSLPVPAIR 183 + V S L I++ Y F + P+ + Sbjct: 134 LAREAGVEVASHRSHTLYHLQGIIDRNGGTPPLTYKKFLSVIEGIAPPDPPVPHIDPSAQ 193 Query: 184 LTGPVTPSNIP-------RFFDYPFQAID---PMFPIGEQNALHILRKFCKEKVYYYVEQ 233 G S+ + + ++ GE AL L + + K + Sbjct: 194 KLGHTPLSDNHDELYGVPTMEELGLETSKLFVEVWHGGETEALKRLDRHLERKAWIASFG 253 Query: 234 RDIPAIQGT----SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWRE 289 + S +SPYL G LSPR + RL + + + K S +L+WRE Sbjct: 254 KPKVTSDSLMASPSGVSPYLRFGCLSPRLFYYRLMDLYRKV--KGGPPPTSLYGQLLWRE 311 Query: 290 FYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSH---LLQAWKQGYTGFPIIDAAMRQLNTI 346 F+ + P+ + P I+W D LQ W TGFP IDA M QL Sbjct: 312 FFFVVSTNNPNFDKMES-NPICLYIKWRTDKQVASDLQKWTDAQTGFPWIDAIMSQLKQE 370 Query: 347 GWMHNRLRMITASFLVKD-LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPY 405 GW+H R+ ASFL + L + W G + F LLD D +SN G W W S S + Sbjct: 371 GWIHYLARVAVASFLTRGCLWISWEAGMKVFAEHLLDADWSSNAGNWMWW-SYSAFSQQF 429 Query: 406 FRIFNPTIQGK 416 F P Sbjct: 430 FNPPCPVEFSN 440 >gi|229918425|ref|YP_002887071.1| cryptochrome, DASH family [Exiguobacterium sp. AT1b] gi|229469854|gb|ACQ71626.1| cryptochrome, DASH family [Exiguobacterium sp. AT1b] Length = 404 Score = 254 bits (648), Expect = 3e-65, Method: Composition-based stats. Identities = 123/427 (28%), Positives = 184/427 (43%), Gaps = 32/427 (7%) Query: 10 HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQH-----GISARQSHFIYAS 64 ++W +NDLR+ D+ L A H+ D + F +P Q+ ++ + + F+ S Sbjct: 3 TIIWYQNDLRVDDHLPLEEALHHDD-PIEGHFFISPNQFIENRYGVIPLGNERLRFLKES 61 Query: 65 LLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLE 124 L V SL GI F H +E LD +L + R NE RR+ + Sbjct: 62 LEDVSGSLDALGIPFYVH----VGHPLETLDPS------DRLLFQRAVGYNERRRENEVM 111 Query: 125 KRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL 184 KR + K+F+ L PF + V+ D+R + + + Sbjct: 112 KRWK--GTYKTFEGFTLFEKEDNPFEK-------MPFLFTEFRKAVEYDVRPRELISRKA 162 Query: 185 TGPVTPSNIPRFFDYPFQAIDPMFP--IGEQNALHILRKFCKEKVYYYVEQRDIPAIQGT 242 T P Q FP GE A L + + Y E R+ + + Sbjct: 163 TAATREVTFPFSIQEVKQDPRTAFPFKGGELAAKRRLNDYLSVPIRTYKETRNGFGVDDS 222 Query: 243 SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVC 302 ++LS YL+ G LSPR+ + L+ + + EL+WREF++ + Sbjct: 223 TKLSAYLANGSLSPRRVFFELEAH--ERTHGVNESTYWLYFELLWREFFQWVALDQGKKL 280 Query: 303 MGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLV 362 I K +W D +++ W++G TG +DA MR+LN GWM NR R I A++ Sbjct: 281 FRSQGIRSKRK-DWRVDPDVVETWRRGETGVDFVDAFMRELNATGWMSNRGRQIVANYFA 339 Query: 363 KDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQG 422 K+L DWR G YF S+L+D D+ASN G W + A GNDS R FN Q +DP Sbjct: 340 KELKQDWRYGASYFESKLIDYDVASNWGNWAYQAGVGNDSR--DRRFNIERQQFTYDPDR 397 Query: 423 TFIRHWL 429 F WL Sbjct: 398 AFRNKWL 404 >gi|323352252|gb|EGA84789.1| Phr1p [Saccharomyces cerevisiae VL3] Length = 406 Score = 254 bits (648), Expect = 3e-65, Method: Composition-based stats. Identities = 116/395 (29%), Positives = 188/395 (47%), Gaps = 33/395 (8%) Query: 12 VWLRNDLRITDNKALYAAC--------HNSDAKVIAVFIATPEQWRQHGISARQSHFIYA 63 W RNDLR+ DN LY + N+ AK+ AV++ + WR H S + FI Sbjct: 2 HWFRNDLRLYDNVGLYKSVALFQQLRQKNAKAKLYAVYVINEDDWRAHMDSGWKLMFIMG 61 Query: 64 SLLQVQKSLSQKGIVFQYHQ-------CSNFDDSIEWLDSYCLQQR---VTKLFYNRQYE 113 +L +Q+SL++ I + SN + +E+ C+ T + N +Y+ Sbjct: 62 ALKNLQQSLAELHIPLLLWEFHTPKSTLSNSKEFVEFFKEKCMNVSSGTGTIITANIEYQ 121 Query: 114 INEVRRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQAD 173 +E+ RD L + HR+ K + DS ++ PG I Y V+TP+ K + + Sbjct: 122 TDELYRDIRLLENEDHRLQLKYYHDSCIVAPGLITTDRGTNYSVFTPWYKKWVLYVNNYK 181 Query: 174 LRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFP-----------IGEQNALHILRKF 222 + + + + P+ + + + D + E+ AL L+ F Sbjct: 182 KSTSEICHLHIIEPLKYNETFELKPFQYSLPDEFLQYIPKSKWCLPDVSEEAALSRLKDF 241 Query: 223 CKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKE----EFVDLLIKPKSGA 278 K Y ++D+ + GTS LS Y++ G +S R N+ + + + +K S Sbjct: 242 LGTKSSKYNNEKDMLYLGGTSGLSVYITTGRISTRLIVNQAFQSCNGQIMSKALKDNSST 301 Query: 279 FSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDA 338 +++ E+ WR+FYRH M +P MG P+ T I+W + + W G TG PI+DA Sbjct: 302 QNFIKEVAWRDFYRHCMCNWPYTSMGMPYRLDTLDIKWENNPVAFEKWCTGNTGIPIVDA 361 Query: 339 AMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGE 373 MR+L G+++NR RMITASFL K+LL+DWR G Sbjct: 362 IMRKLLYTGYINNRSRMITASFLSKNLLIDWRWGG 396 >gi|332993096|gb|AEF03151.1| deoxyribodipyrimidine photolyase [Alteromonas sp. SN2] Length = 437 Score = 253 bits (647), Expect = 4e-65, Method: Composition-based stats. Identities = 112/435 (25%), Positives = 185/435 (42%), Gaps = 12/435 (2%) Query: 1 MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQS-H 59 M+ TT + L W R+DLR D AL + C D + ++I + + + Sbjct: 8 MRDTTRPTRGLFWFRHDLRFHDQVALSSLCQQVDELTL-LYIIDDSWFVPNSYGIQPVGE 66 Query: 60 FIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRR 119 + L+ ++L++K + + + E L S T NE R Sbjct: 67 HRFNFLIDTIEALNEKASTLGHSILTLRGQTPELLVSLLSSNAFTHFGVTEHGGYNERRE 126 Query: 120 DKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPV 179 + + + + + + S L + + M V+TPF++ + + + + Sbjct: 127 VEAVSRFFP-NIEIVTGESSSLFNQDDLPFNLEVMPDVFTPFKRKIESAIKPREPMATLT 185 Query: 180 PAIRLTGPVTPSNIPRFFDY--PFQAIDPMFPIGEQNALHILRKFCKEKV--YYYVEQRD 235 R P + + P + F GE L L + E Y E R+ Sbjct: 186 ALPRSYTPDIDAECQYTLNRRPPRNQAEGTFVGGEDAVLSHLNSYLFEWKVAASYKETRN 245 Query: 236 -IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHL 294 + + +++LSP+L+ G LS R +K+ +++ + EL+WRE++ L Sbjct: 246 ALDNWRDSTKLSPWLATGALSARYVIQEVKKYEQNVV--KNDSTYWIYFELLWREYFYWL 303 Query: 295 MAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLR 354 + S I ++ + D + W G TG+PI+DA MRQL + G++ NR R Sbjct: 304 QQKFGSKWFQLEGIK-SKLPNTSHDPQVFVGWCNGQTGYPIVDACMRQLASTGYLSNRGR 362 Query: 355 MITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQ 414 + AS LV +L DWR G +F SQLLD D+ASN G W + A G D R FN Q Sbjct: 363 QLVASCLVNELRQDWRYGAAWFESQLLDYDVASNWGNWLYLAGVGTDPREN-RQFNLQKQ 421 Query: 415 GKRFDPQGTFIRHWL 429 + +DP+G F WL Sbjct: 422 TEIYDPKGEFCAKWL 436 >gi|156977901|ref|YP_001448807.1| deoxyribodipyrimidine photolyase [Vibrio harveyi ATCC BAA-1116] gi|156529495|gb|ABU74580.1| hypothetical protein VIBHAR_06693 [Vibrio harveyi ATCC BAA-1116] Length = 460 Score = 253 bits (645), Expect = 7e-65, Method: Composition-based stats. Identities = 117/430 (27%), Positives = 182/430 (42%), Gaps = 23/430 (5%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFI---ATP---EQWRQHGISARQSHF 60 ++ L W NDLR+ DN L A DA +I V+ +P ++ + + F Sbjct: 13 KTIGLYWFTNDLRMHDNPLLARASEEVDA-LIFVYCYPKLSPFLAHFAQESMFGSAKQQF 71 Query: 61 IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120 + SL V +L+ Q + ++ C VT L+ + E Sbjct: 72 LDESLHCVNLTLNAFDQRLQVVDLHPYQAIKHAVEKLC----VTHLYCDTFPGSEERDVV 127 Query: 121 KLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVP 180 + + L+H IC+ S+L + + +T FRK ++ ++ Sbjct: 128 DHIRQELEHLTICQQEVRSLL-TVEDLPFALEDLPDTFTKFRKKAENVSLEEPFATVTAL 186 Query: 181 AIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNAL-HILRKFCKEKVYYYVEQRD-IPA 238 +G P+ +F GEQ L H R F Y + R+ + Sbjct: 187 PPTPSGLALPT-----LRLIRDVKPCLFTGGEQAGLEHARRYFSSTLASEYKQTRNGLDG 241 Query: 239 IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFY 298 + +++ SP+L+ G LSP+ + LK + L + EL+WRE++ + Sbjct: 242 MDYSTKFSPWLAHGCLSPKTIYAMLKRY--ERLKGANESTYWIYFELLWREYFYWYARRH 299 Query: 299 PSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITA 358 I + + +H Q WK+G T FPI++A M QLN G+M NR R + A Sbjct: 300 KRQLFRFGGIQNQAPLT-SFYAHRFQQWKKGETPFPIVNACMHQLNETGYMSNRGRQLVA 358 Query: 359 SFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRF 418 S LV +L +DWR G YF SQL+D D+ASN G WQ+ A G D R FN Q + + Sbjct: 359 SCLVHELGLDWRYGAAYFESQLVDYDVASNWGNWQYLAGVGADPRG-SRQFNLEKQTEIY 417 Query: 419 DPQGTFIRHW 428 DP FI W Sbjct: 418 DPHMEFIDRW 427 >gi|116256289|gb|ABJ90474.1| cryptochrome 1 [Equus caballus] Length = 378 Score = 252 bits (644), Expect = 8e-65, Method: Composition-based stats. Identities = 96/387 (24%), Positives = 151/387 (39%), Gaps = 30/387 (7%) Query: 61 IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120 + L + +L + + + + +TKL E RD Sbjct: 2 LLQCLEDLDANLRKLNSRLFVIRG----QPADVFPRLFKEWNITKLSIEYDSEPFGKERD 57 Query: 121 KLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLV-QADLRSLPV 179 ++K + S L L+ +++ P Q L+ + + +PV Sbjct: 58 AAIKKLATEAGVEVIVRISHTLY---DLDKIIELNGGQPPLTYKRFQTLISKMEPLEIPV 114 Query: 180 PAI------RLTGPVTPSNIPR-----FFDYPFQA---IDPMFPIGEQNALHILRKFCKE 225 I + T P++ + + + F ++P GE AL L + + Sbjct: 115 ETITSEVIEKCTTPLSDDHDEKYGVPSLEELGFDTDGLPSAVWPGGETEALTRLERHLER 174 Query: 226 KVYYYVEQRDIPAIQGT----SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSW 281 K + +R + LSPYL G LS R + RL + + + K S S Sbjct: 175 KAWVANFERPRMNANSLLASPAGLSPYLRFGCLSCRLFYFRLTDLYRKVK-KNSSPPLSL 233 Query: 282 LNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMR 341 +L+WREF+ P + P +I W+K+ L W +G TGFP IDA M Sbjct: 234 YGQLLWREFFYTAATNNPRFDKMEG-NPICVQIPWDKNPEALAKWAEGRTGFPWIDAIMT 292 Query: 342 QLNTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGN 400 QL GW+H+ R A FL + DL + W G + F LLD D + N G W W S + Sbjct: 293 QLRQEGWIHHLARHAVACFLTRGDLWISWEEGMKVFEELLLDADWSINAGSWMW-LSCSS 351 Query: 401 DSVPYFRIFNPTIQGKRFDPQGTFIRH 427 +F + P G+R DP G +IR Sbjct: 352 FFQQFFHCYCPVGFGRRTDPNGDYIRR 378 >gi|323496729|ref|ZP_08101774.1| deoxyribodipyrimidine photolyase [Vibrio sinaloensis DSM 21326] gi|323318154|gb|EGA71120.1| deoxyribodipyrimidine photolyase [Vibrio sinaloensis DSM 21326] Length = 417 Score = 252 bits (643), Expect = 1e-64, Method: Composition-based stats. Identities = 112/432 (25%), Positives = 187/432 (43%), Gaps = 25/432 (5%) Query: 8 SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFI---ATPEQWR---QHGISARQSHFI 61 L W NDLR+ DN L A D ++I V++ TP + Q + A + F+ Sbjct: 3 KTGLYWFTNDLRVADNPLLTEAASEVD-QLICVYLYPQLTPFLAQFSGQQQLGAHRLRFV 61 Query: 62 YASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDK 121 +L + SL+++G + + L S Q VT L+ NR +E ++ Sbjct: 62 DQALQDLNHSLAKQGQRLAVIH----QTAEQTLPSLIEQYNVTHLYVNRCAGWDETKQMH 117 Query: 122 LLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPA 181 L+++ + + S + L + Q+ +T FRK + + L +P+ Sbjct: 118 TLKQQFPYLKVV-SLSVNSLFQESQLPFTLAQLPATFTRFRKCMEPVNTRDLLPVSELPS 176 Query: 182 IRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNAL-HILRKFCKEKVYYYVEQRD-IPAI 239 L + GE H F + +Y + R+ + Sbjct: 177 TPLPPEERSQPHQADPRVDYL-------GGETAGQQHCQWYFSHDFASHYKQTRNGLVGK 229 Query: 240 QGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYP 299 +++ SP+L++G LSP Q ++ + I + + EL+WRE++ + Sbjct: 230 SYSTKFSPWLALGCLSPAQLVAYIQRYEHE--IGANESTYWIVFELLWREYFYWYAMKHG 287 Query: 300 SVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITAS 359 ++ + I + D W +G T F I++A M+QL+ G++ NR R + AS Sbjct: 288 ALLFARSGIT-ASTVTKPLDQSKFHRWTKGETDFAIVNACMKQLHATGYLSNRGRQLAAS 346 Query: 360 FLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFD 419 L+ +L +DWR G YF +QL+D D+ASN G WQ+ A G D P R FN Q + +D Sbjct: 347 CLIHELDMDWRYGAAYFETQLIDYDVASNWGNWQYLAGVGADPNPSRR-FNLDKQTQMYD 405 Query: 420 PQGTFIRHWLPE 431 P FI WL E Sbjct: 406 PHRQFITRWLGE 417 >gi|295096577|emb|CBK85667.1| Deoxyribodipyrimidine photolyase [Enterobacter cloacae subsp. cloacae NCTC 9394] Length = 278 Score = 251 bits (642), Expect = 1e-64, Method: Composition-based stats. Identities = 121/269 (44%), Positives = 165/269 (61%), Gaps = 4/269 (1%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M HLVW R DLRI DN AL AAC DA V+A+FIATPEQWRQH ++ RQ+ + A L Sbjct: 1 MPTHLVWFRADLRIHDNFALAAACRAKDANVLALFIATPEQWRQHDMAPRQAALLSAYLN 60 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 +Q SL++KGI Y + +F + + + C Q VT L+YN QYE NE +RD+ LEK Sbjct: 61 DLQHSLAEKGIPLIYKEAHDFAAQRQTVQAICQQHAVTHLYYNYQYEFNEQQRDRQLEKT 120 Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 L V+C+ FDDSV+L PGS++ + +MYKV+TPF+ A I+ L + + P +R Sbjct: 121 LA-GVVCEGFDDSVMLAPGSVMTGSHEMYKVFTPFKNAFIKRLKEGLPECVTAPTVR-GE 178 Query: 187 PVTPSNIPRFFDYPFQAID-PMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245 +T R +YP Q+ D +FP E+ A+ LR+FC + Y +RD PA +GTS+L Sbjct: 179 TITDMPAIRL-NYPQQSFDETVFPASEKAAIDRLRQFCTQGAAEYEARRDFPATEGTSRL 237 Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKP 274 S L++G LSPRQC +RL E L Sbjct: 238 SACLALGALSPRQCLHRLLAEQPQGLDGG 266 >gi|152994374|ref|YP_001339209.1| cryptochrome DASH [Marinomonas sp. MWYL1] gi|150835298|gb|ABR69274.1| Cryptochrome DASH [Marinomonas sp. MWYL1] Length = 441 Score = 251 bits (642), Expect = 1e-64, Method: Composition-based stats. Identities = 107/429 (24%), Positives = 177/429 (41%), Gaps = 20/429 (4%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPE-----QWRQHGISARQSHFI 61 M + LVW +DLR D L+ A D +I ++ P ++ G+SA + + Sbjct: 1 MKLGLVWFGDDLRCADQNMLWRAVQEVDY-LICLYCDEPHNNHPSRYATQGMSANRRRLL 59 Query: 62 YASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDK 121 L + L G D+ L+ + ++ L+ N +E + Sbjct: 60 NQGLQDLALQLQALGQTLFVSSM----DAATSLNLLLNEIPISHLYRNHHGGWDEQQTLN 115 Query: 122 LLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPA 181 +E R V L P + Q+ ++ FR+ + V L +L Sbjct: 116 RIESRYSD-VRIHLDHGLSLFTPSQLPFDIAQLPDSFSKFRRLVENLDVFTPLPALQKLP 174 Query: 182 IRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHIL-RKFCKEKVYYYVEQRD-IPAI 239 T + + + MF GE+ A+ L F +Y E R+ + Sbjct: 175 PAPTFDIQCIRPWQLKQI---EDNSMFTGGERAAVDQLSDYFSTNLPSHYKETRNELDGW 231 Query: 240 QGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYP 299 + +++ SP+L+ G LS RQ + + + + EL+WRE++ Y Sbjct: 232 ENSTKFSPWLAQGSLSARQI--KASIDVYERDHGANESTYWIYFELLWREYFHWYATCYG 289 Query: 300 SVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITAS 359 P ++ + + + + W QG T +P+++A M+QLN G+M NR R I AS Sbjct: 290 KQLF-LPGGLSGKQTQGSYYAERFRKWSQGNTPYPLVNACMKQLNETGFMSNRGRQIVAS 348 Query: 360 FLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFD 419 L+ +L +DWR G YF QL+D + SN G WQ+ A G D R FN Q +++D Sbjct: 349 CLIYELGIDWRYGAAYFEEQLIDYSVGSNWGNWQYIAGVGADPRG-GRHFNLQKQTEQYD 407 Query: 420 PQGTFIRHW 428 P FI W Sbjct: 408 PNLHFIHKW 416 >gi|254281574|ref|ZP_04956542.1| deoxyribodipyrimidine photo-lyase [gamma proteobacterium NOR51-B] gi|219677777|gb|EED34126.1| deoxyribodipyrimidine photo-lyase [gamma proteobacterium NOR51-B] Length = 439 Score = 251 bits (642), Expect = 2e-64, Method: Composition-based stats. Identities = 106/425 (24%), Positives = 166/425 (39%), Gaps = 23/425 (5%) Query: 10 HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69 HL W + DLR+ DN AL + + + T G+ ++ F+ SL ++ Sbjct: 9 HLHWFQRDLRLADNPALSSHVAADTLLCVYLMPKTGPWCNVTGMGPQRDRFLRESLQALR 68 Query: 70 KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH 129 L++ G + S L + +T++ E + L++RL Sbjct: 69 DELNRLGQDLLVLEGSPEL----VLPDLVSRFDITEVSACTAPGYYERLTYERLQRRL-- 122 Query: 130 RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQAD---LRSLPVPAIRLTG 186 V + + L + +TPFRK + + +LP P Sbjct: 123 GVPFELHRGNTLFTEDQLPTGLADFPATFTPFRKQVEPLTITPPAAEPVTLPPPPAAQFD 182 Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFC--KEKVYYYVEQRD-IPAIQGTS 243 + P+ P P G L +R+F + ++ Y E R+ + + G+S Sbjct: 183 AIPPAQALPSPALP-------IPGGRAAGLRRVRQFIFDERRIVSYKETRNCLDGLDGSS 235 Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCM 303 LSP+L+ G LS R+ + + + L + EL+WREF++ Sbjct: 236 SLSPWLANGNLSAREVAHEIFRFEREQL--ANESTYWLFFELLWREFFQWRAVIDDHGLF 293 Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363 D W G T FP+++A M QL GWM NR R I AS L+ Sbjct: 294 HIGG-VQKRGRRCCFDPRAFARWSAGDTDFPLVNALMHQLTDTGWMSNRGRQIVASCLIN 352 Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423 +L DWR G +F L+D D+ SN G WQ+ A G D R FN Q + DP+ Sbjct: 353 ELGQDWRFGAAFFEKHLIDYDVGSNYGNWQYIAGVGADPRG-GRHFNLDKQAAQHDPENI 411 Query: 424 FIRHW 428 F W Sbjct: 412 FTTKW 416 >gi|254516979|ref|ZP_05129037.1| deoxyribodipyrimidine photo-lyase [gamma proteobacterium NOR5-3] gi|219674484|gb|EED30852.1| deoxyribodipyrimidine photo-lyase [gamma proteobacterium NOR5-3] Length = 438 Score = 251 bits (642), Expect = 2e-64, Method: Composition-based stats. Identities = 103/425 (24%), Positives = 170/425 (40%), Gaps = 23/425 (5%) Query: 10 HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69 + W RNDLR+ D+ L AA + ++ ++ G+ ++ FI SL ++ Sbjct: 7 AIYWFRNDLRLHDHPGLVAAAAADELLLVYLWPRQRAWCNTQGLGEQRERFICESLTELA 66 Query: 70 KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH 129 K L G Q S + V + ++ E R ++L +RL Sbjct: 67 KDLQPLGQKLLVLQGSPEL----VIPDLVRDYGVNAIHTSQCAGSYETRALRVLRERLD- 121 Query: 130 RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADL----RSLPVPAIRLT 185 + + L + ++ ++PFR+ + + L + LP P Sbjct: 122 -IPVLEHGGNSLFQEKDVAALCPELLDSFSPFRRKVEKQLTAVEPSRNLPQLPAPPAVQF 180 Query: 186 GPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCK-EKVYYYVEQRD-IPAIQGTS 243 + P+ P + G L++F + Y E R+ + ++G+S Sbjct: 181 HSIPPARTKPPLGLPLR-------GGSHAGQRRLKQFLDSGAIRQYKETRNCLDPLEGSS 233 Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCM 303 LSP+LS+G +S R+ + + + + EL+WRE++ A V + Sbjct: 234 TLSPWLSLGSISAREIAAAIAQHEAEQG--ANESTYWLYFELLWREYFF-WRALRDGVNL 290 Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363 + + W G T P+++A M QL GWM NR R I AS L+ Sbjct: 291 FRHGGRQGAVSRCTFEPRNFARWCAGDTNHPLVNALMHQLVATGWMSNRGRQIAASCLIH 350 Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423 D +DWR G +F L+D D+ SN G WQ+ A G D R FN Q ++DP G Sbjct: 351 DFGIDWRYGAAFFEKHLIDYDVGSNYGNWQYIAGVGADPRG-GRAFNIDKQTAQYDPDGV 409 Query: 424 FIRHW 428 F W Sbjct: 410 FTHKW 414 >gi|76803462|ref|YP_327731.1| deoxyribodipyrimidine photolyase [Natronomonas pharaonis DSM 2160] gi|76559277|emb|CAI50885.2| deoxyribodipyrimidine photolyase [Natronomonas pharaonis DSM 2160] Length = 616 Score = 251 bits (641), Expect = 2e-64, Method: Composition-based stats. Identities = 123/532 (23%), Positives = 196/532 (36%), Gaps = 79/532 (14%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGIS-ARQSHFIYASLLQVQ 69 +VW R LR D AL A D V + + P + G++ + F + ++ + Sbjct: 48 VVWHRKHLRTADQLALTRAVSGGDV-VCPLLVFDPAFYGDGGLACDARIRFFHEAVASLD 106 Query: 70 KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQR--------------------------- 102 + + + + L + Sbjct: 107 RLYAAAPAPTVTRTAEAPRERLAATTPLSLNETREDDRTAEDSLSGASSPGLTIGYGSPP 166 Query: 103 -VTKLFYNRQYEI---------NEVRRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHAL 152 V + F N+ + I RRD + + + S D G + Sbjct: 167 TVLQRFANKGWTILTMATPTSRYGKRRDDRVRDVCGNSIEFISGD-------GLVRGQEW 219 Query: 153 QMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIG- 211 T L + + L +TP+ I FD + P G Sbjct: 220 SRTNWQTHVETWLNEAPHTPAWSTADTTQFVLETGITPAAIDAAFDI--SPSKTLVPTGT 277 Query: 212 EQNALHILRKFCKEKVYYYVEQRDIP--AIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVD 269 + A LR F E+++ Y P A + +S LSPYL+ G+LS RQ + + E+ + Sbjct: 278 HRRAAERLRSFV-ERIHSYPGNISAPQDAREASSGLSPYLNFGLLSVRQVYQSVSEQAPE 336 Query: 270 LLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQG 329 G + + L+W Y + +P + + + D L+QAWK G Sbjct: 337 CR-----GRQMFTDRLVWNLHYNQKLVDWPGWTDTAVNPVFEDFNRDHHDPELVQAWKGG 391 Query: 330 YTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNN 389 TGFP++DAAMR L GW++ R+R + ASF V L W IG +++ L+D D+ N Sbjct: 392 ETGFPMVDAAMRCLRQTGWLNFRMRAMCASFFVHILQQPWWIGADWYHHHLIDSDVGINY 451 Query: 390 GGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDK 449 QW + G P R++NP Q + DP G +I WLPEL +P ++ P Sbjct: 452 T--QWQSQAGTIGKPVQRVYNPRKQVRDHDPDGDWICRWLPELAPLPNTFLDRPERTPLA 509 Query: 450 ND------LSLNYPLPIVD--------------HKKACHHTLNQYYAAKKQS 481 + +YP P+VD H A L + AK+ S Sbjct: 510 VQTDCGVTIGDDYPRPVVDFDARREAFWSRYERHHPAAARQLARPEIAKRAS 561 >gi|269965489|ref|ZP_06179607.1| deoxyribodipyrimidine photolyase [Vibrio alginolyticus 40B] gi|269829852|gb|EEZ84083.1| deoxyribodipyrimidine photolyase [Vibrio alginolyticus 40B] Length = 450 Score = 251 bits (640), Expect = 3e-64, Method: Composition-based stats. Identities = 113/431 (26%), Positives = 182/431 (42%), Gaps = 23/431 (5%) Query: 6 AMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFI---ATP---EQWRQHGISARQSH 59 + L W NDLR+ DN L +A D ++I ++ TP ++ + Sbjct: 2 KKKIGLYWFTNDLRLHDNPLLKSASVEMD-ELICLYCYPSMTPYLHHFAQEASFGRAKLQ 60 Query: 60 FIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRR 119 F+ +SL ++ +SL+ G + + ++ + VT ++ + +E + Sbjct: 61 FLDSSLSELNQSLNHLGQRLWAVELTPDQAIKYAVNRF----GVTHIYADAFPGSDEQQA 116 Query: 120 DKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPV 179 + + H V K LL + + +T FRK + + S+ Sbjct: 117 LDRVAEGASH-VKIKQQAIRTLLREEQLPFDLSNLPTTFTQFRKQVEGLDISRPHESIRS 175 Query: 180 PAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNAL-HILRKFCKEKVYYYVEQRD-IP 237 G PS +FD F GE L H + F Y + R+ + Sbjct: 176 LPPIPLGVNLPSVTAYYFD-----AKAAFHGGESRGLEHCRQYFASTLASEYKQTRNGLD 230 Query: 238 AIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAF 297 + +++ SP+L+ G +SP+ + LK + + EL+WRE++ Sbjct: 231 GMDYSTKFSPWLAHGCVSPKTIYAMLKRY--EAENGANDSTYWIYFELLWREYFYWYARR 288 Query: 298 YPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMIT 357 + I + + +H Q WK+G T FPI++A M QLN G+M NR R + Sbjct: 289 HKRQLFRFGGIQNRAPLT-SFYAHRFQQWKKGETPFPIVNACMHQLNETGYMSNRGRQLV 347 Query: 358 ASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKR 417 AS LV +L +DWR G YF SQL+D D+ASN G WQ+ A G D R FN Q + Sbjct: 348 ASCLVHELGLDWRYGAAYFESQLVDYDVASNWGNWQYLAGVGADPRG-SRQFNLEKQTEM 406 Query: 418 FDPQGTFIRHW 428 +DP FI W Sbjct: 407 YDPHMEFIDRW 417 >gi|84385647|ref|ZP_00988678.1| deoxyribodipyrimidine photolyase [Vibrio splendidus 12B01] gi|84379627|gb|EAP96479.1| deoxyribodipyrimidine photolyase [Vibrio splendidus 12B01] Length = 462 Score = 251 bits (640), Expect = 3e-64, Method: Composition-based stats. Identities = 117/449 (26%), Positives = 195/449 (43%), Gaps = 31/449 (6%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFI------ATPEQWRQHGISARQSHF 60 + L NDLRI DN+ LY A + D K+I V + + + ++ SA + F Sbjct: 2 KKIGLYLFTNDLRINDNQLLYYAAQSVD-KLICVIVEPTLVRFSADLAQEQSYSAHRQAF 60 Query: 61 IYASLLQVQKSLSQKGIVFQYHQCSNF--DDSIEWLDSYCLQQRVTKLFYNRQYEINEVR 118 + S+ ++ +L + G + ++ D + + L + Q VT F N +E + Sbjct: 61 VSQSIANLESNLVKLGQQLVVIRSNHLEPDTAEKTLSHIIVSQHVTHFFANAHCGYDERQ 120 Query: 119 RDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLP 178 + ++++ + V+C S L + ++ +T FRK + V + + Sbjct: 121 LIRSIQRQSPNLVMCLPHH-STLFDSHELPFELSKVPSSFTKFRKLVEHLDVNRNETVIS 179 Query: 179 VPAIRLTGPVTPSNIPRFFDYP--FQAIDPMFPIGEQNALHILR-KFCKEKVYYYVEQRD 235 + +T ++ F P + + GE L L F + + Y + R+ Sbjct: 180 ALPPAVRLALTSTSTISLFSSPNDESVVISDYWGGEGAGLAHLENYFSHDYAFNYKQTRN 239 Query: 236 -IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHL 294 I+ +++ SP+L++G +SP+ + LK+ D I + EL+WRE++ Sbjct: 240 VFDGIENSTKFSPWLALGCVSPKTIYCHLKQFEADHGI--NDSTYWIYFELLWREYFYWK 297 Query: 295 MAFYPSVCMGK-PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRL 353 S G+ + L WK G T +PI+DA MRQLNT G+M NR Sbjct: 298 CLSLGSSLFGETSDHELNSSNSSATLNLNLAKWKSGNTNYPIVDACMRQLNTTGYMSNRG 357 Query: 354 RMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAAS--------------TG 399 R + AS L+ +L +DWR G YF SQL+D D+ASN G W + A Sbjct: 358 RQLAASCLIYELGIDWRHGAAYFESQLIDYDVASNWGNWAYIAGALRPQVSTQTNKQKNA 417 Query: 400 NDSVPYFRIFNPTIQGKRFDPQGTFIRHW 428 N + P R F+ Q +DP FI W Sbjct: 418 NQAQPKSRHFDLGKQTDMYDPDHAFINKW 446 >gi|261856009|ref|YP_003263292.1| cryptochrome, DASH family [Halothiobacillus neapolitanus c2] gi|261836478|gb|ACX96245.1| cryptochrome, DASH family [Halothiobacillus neapolitanus c2] Length = 447 Score = 251 bits (640), Expect = 3e-64, Method: Composition-based stats. Identities = 120/457 (26%), Positives = 189/457 (41%), Gaps = 36/457 (7%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPE-----QWRQHGISARQSHFI 61 MS L W R DLR+ DN+ AC +DA ++ V+I P +W I + + Sbjct: 1 MSRVLYWFRQDLRLRDNRCFIRACDQADA-LLPVYILDPAMEQPTRWGFDRIGPHRRVVL 59 Query: 62 YASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDK 121 +L + + L Q+G Q ++ L + Q + ++ E Sbjct: 60 GQALRGLDRQLRQRGSGLCLLQG----QPVDQLLAMVRQGAIDTVWVEDIAAPQERALVD 115 Query: 122 LLEKRLQH-RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVP 180 L++ L+ V + S L+ P + ++ +TPFRK + Q V + P P Sbjct: 116 ALKQSLEPLGVSVYTGWQSSLIAPDDLPFAIDRLPDSFTPFRKRVEQAAVCIE-HPYPAP 174 Query: 181 AIRLTGPVTPSNIPRFFDYPFQAI------------------DPMFPIGEQNALHILR-K 221 P + D F A+ DP + E A L Sbjct: 175 DAVPPWPESVPYPTASIDAQFDALCGASTRPAVDARSAFPCDDPDCSVDEIGAQRHLDQY 234 Query: 222 FCKEKVYYYVEQRD-IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFS 280 F + + Y R+ + +S+ SP+L++GVLS RQ + + + G + Sbjct: 235 FARGLPHTYKATRNQLIGKDYSSKWSPFLALGVLSARQVY--AARQHFEQARGANEGTYW 292 Query: 281 WLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAM 340 EL+WR+++R L Y + D+ + WK TG IDAAM Sbjct: 293 LRFELLWRDYFRFLHLKYGRRLYHARGLAPDRPAP-THDADRFERWKNADTGHAFIDAAM 351 Query: 341 RQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGN 400 +L+ G++ NR+R + AS+L+ DL DWR G +F SQL+D D+ SN G W + A G Sbjct: 352 TELSRTGYLSNRMRQVVASYLIHDLGCDWRAGAAWFESQLVDYDVYSNQGNWLYLAGYGT 411 Query: 401 DSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPT 437 D R FNP Q + +DP G + WL +P Sbjct: 412 DPRGSRR-FNPDKQAQDYDPGGAYRALWLSGTAAMPA 447 >gi|312881360|ref|ZP_07741157.1| RNA-binding cryptochrome Cry1 [Vibrio caribbenthicus ATCC BAA-2122] gi|309371000|gb|EFP98455.1| RNA-binding cryptochrome Cry1 [Vibrio caribbenthicus ATCC BAA-2122] Length = 431 Score = 250 bits (639), Expect = 3e-64, Method: Composition-based stats. Identities = 110/434 (25%), Positives = 180/434 (41%), Gaps = 32/434 (7%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVF------IATPEQWRQHGISARQSHFIY 62 + L W NDLR+TDN L+ A D ++I ++ + Q A ++ F+ Sbjct: 5 IGLYWFTNDLRLTDNPLLHKASKEVD-QLICLYTRPQLTCFLQKYSCQERWGAARTLFLN 63 Query: 63 ASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKL 122 SL + +SL G L + V+ L+ N+ +E + Sbjct: 64 QSLRNLSESLDDVGQQLTVVDEPTIGT----LSDLVTKHEVSDLYCNQFAGFDEQSVIEQ 119 Query: 123 LEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKAL----IQNLVQADLRSLP 178 L + +I + L + + +T FRK + ++ LV+ P Sbjct: 120 LGRNFSDLII-HQNSSNHLYSEEQLPFALNGLPNTFTKFRKLVEGISLRELVEVPRLPPP 178 Query: 179 VPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNAL-HILRKFCKEKVYYYVEQRD-I 236 + ++ + + + F GE + H LR F ++ Y R+ + Sbjct: 179 IKSVGRGVQIPAEKQMQSVE---------FLGGEVFGMDHCLRYFSTKRASEYKLTRNGL 229 Query: 237 PAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMA 296 +++ SP+L+ G +SPRQ L++ + + EL+WREF+ Sbjct: 230 DGPSYSTKFSPWLAHGCISPRQVLEVLRDY--EQKNGANESTYWIFFELLWREFFYWYAR 287 Query: 297 FYPSVCMGKPFIPWTEKI--EWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLR 354 + I K + S W +G T FPI++A M QL G+M NR R Sbjct: 288 RWGKNLFLYSGIKTCSKPAAKGTSVSTAFSNWIEGKTDFPIVNACMNQLRKTGFMSNRGR 347 Query: 355 MITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQ 414 + AS L+ +L +DWR G YF +QL+D D+ SN G WQ+ A G D+ P R FN Q Sbjct: 348 QLVASCLIHELGIDWRCGAAYFETQLIDYDVGSNWGNWQYLAGVGADTQPA-RQFNLGKQ 406 Query: 415 GKRFDPQGTFIRHW 428 + +DP+ FI W Sbjct: 407 TEIYDPKREFIMQW 420 >gi|163803660|ref|ZP_02197523.1| deoxyribodipyrimidine photolyase [Vibrio sp. AND4] gi|159172532|gb|EDP57394.1| deoxyribodipyrimidine photolyase [Vibrio sp. AND4] Length = 446 Score = 250 bits (639), Expect = 3e-64, Method: Composition-based stats. Identities = 112/429 (26%), Positives = 174/429 (40%), Gaps = 23/429 (5%) Query: 8 SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFI------ATPEQWRQHGISARQSHFI 61 + L W N+LRI DN L + +++I ++ ++ + F+ Sbjct: 4 KIGLYWFTNELRIHDNPLLAE-VDKAVSELICIYCYPKLPPFLTHFAQEAQFGQNKLRFL 62 Query: 62 YASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDK 121 SL + SL+ + Q + ++ VT L+ + ++E Sbjct: 63 DESLHCLNLSLNARNQRLQVVDLLPYQAIKHAIEKL----DVTHLYCDAFSGVDEQDVID 118 Query: 122 LLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPA 181 + H IC+ S L + + +T FR LV+ S PV Sbjct: 119 KIRSDFPHLTICQREVRS-LFALDDLPFSLENLPGTFTKFR-----KLVEKLPVSKPVAT 172 Query: 182 IRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNAL-HILRKFCKEKVYYYVEQRD-IPAI 239 + P+ +F GEQ L H + F Y + R+ + + Sbjct: 173 VSSLPPIPEGLALPTLRLIGDGKSYLFNGGEQAGLEHCQQYFSSISASDYKQTRNGLDGM 232 Query: 240 QGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYP 299 + +++ SP+L+ G LSP+ L + + + EL+WRE++ Y Sbjct: 233 EYSTKFSPWLAHGCLSPKVICAMLSRY--EHVNGANDSTYWIYFELLWREYFYWYARKYK 290 Query: 300 SVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITAS 359 I + + H Q WKQG T FPI++A M QLN G+M NR R + AS Sbjct: 291 HQLFRFGGIRNQVPLT-SFYGHRFQQWKQGETPFPIVNACMHQLNETGYMSNRGRQLVAS 349 Query: 360 FLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFD 419 LV +L +DWR G YF SQL+D D+ASN G WQ+ A G D R FN Q + +D Sbjct: 350 CLVHELGLDWRYGAAYFESQLIDYDVASNWGNWQYLAGVGADPRGA-RQFNLKKQTEIYD 408 Query: 420 PQGTFIRHW 428 P FI W Sbjct: 409 PNMAFINRW 417 >gi|269104335|ref|ZP_06157031.1| deoxyribodipyrimidine photolyase single-strand-specific [Photobacterium damselae subsp. damselae CIP 102761] gi|268160975|gb|EEZ39472.1| deoxyribodipyrimidine photolyase single-strand-specific [Photobacterium damselae subsp. damselae CIP 102761] Length = 436 Score = 250 bits (639), Expect = 3e-64, Method: Composition-based stats. Identities = 109/429 (25%), Positives = 176/429 (41%), Gaps = 20/429 (4%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQ-----HGISARQSHFI 61 M L +NDLR+ DN AL A D ++ V+ Q + H A + F+ Sbjct: 1 MKTGLYLFQNDLRLHDNLALLNATTQCDRLLL-VYCLPYHQANRYPYHIHNYGALRLQFL 59 Query: 62 YASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDK 121 SL Q+ + L + + L Q + + + Q E + + Sbjct: 60 LQSLHQLHQQLQDLEQELLV----FLEHPLHILPQLISQYDIHTIISSEQVGYYENQTWQ 115 Query: 122 LLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPA 181 L +R + + K + LL + ++ ++ FR+ + + P + Sbjct: 116 TLNQRYPY-IEFKQWPTHTLLHKEQLPFDLNKLPSTFSQFRRQVEHIEL---TPLTPYIS 171 Query: 182 IRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILR-KFCKEKVYYYVEQR-DIPAI 239 P ++I + F GE A+ L F +K Y E R D+ Sbjct: 172 HLPPSPNKIAHISILDSFISHPKPSDFIGGEATAISHLTAYFKSDKASRYKETRNDLDGW 231 Query: 240 QGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYP 299 +++ SP+L+ G LS ++ L + + P S + EL+WRE+++ + Sbjct: 232 DYSTKFSPWLAQGCLSAKRVIYELNQYHHQVDETPSSQWIKF--ELLWREYFQWYAHHHQ 289 Query: 300 SVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITAS 359 I + + + W + T +P+++A MRQL T G+M NR R I AS Sbjct: 290 QKIFQFKGIKSSSP-HTSFYPERFKRWSESNTPYPLVNALMRQLITTGYMSNRGRQIVAS 348 Query: 360 FLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFD 419 V +L +DWR G +F L+D D+ASN G WQ+ A G D R FN Q + FD Sbjct: 349 CFVNELELDWRYGAAFFEQHLIDYDIASNWGNWQYLAGVGADPKG-NRHFNLDKQTELFD 407 Query: 420 PQGTFIRHW 428 PQG FI W Sbjct: 408 PQGQFITKW 416 >gi|119713707|gb|ABL97757.1| deoxyribodipyrimidine photolyase [uncultured marine bacterium EB0_41B09] Length = 424 Score = 250 bits (639), Expect = 3e-64, Method: Composition-based stats. Identities = 108/434 (24%), Positives = 192/434 (44%), Gaps = 26/434 (5%) Query: 10 HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIAT-----PEQWRQHGISARQSHFIYAS 64 + W RNDLR+ DN +L A +SD +++ V++ +W + + ++ Sbjct: 3 SIYWFRNDLRVIDNLSLNEAIESSD-EILFVYMQDVQSFKDTEWGFSRMGPHRKLYLSQG 61 Query: 65 LLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLE 124 L +Q+ LS G Y+ DD+++ L + + +++ E+ ++ L Sbjct: 62 LNALQEKLSNYGHSLNYY----LDDTVDGLLKLVEKFHIDRIYCESIDSHEELDQEIRLR 117 Query: 125 KRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL 184 H+V S+ S L I + + V+T FRK + V+ SL I Sbjct: 118 ---GHKVDLYSYYQSGLFLNDQIPFNLNDLPDVFTKFRKEIESREVKPIKPSLINQRINA 174 Query: 185 TGPVTPSN-------IPRFFDYPFQAIDPMFPIGEQNALHILR-KFCKEKVYYYVEQRD- 235 + + F + F GE+ L F K Y + R+ Sbjct: 175 IKSIVDEESNEIEMEQMSYPKSSFPISEDRFFGGEEKGFTFLEAYFSSNKPSTYKKTRNE 234 Query: 236 IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLM 295 + I +++ SP+L+ G +S RQ ++ L +L + + EL+WRE++R + Sbjct: 235 LMGIDFSTKFSPWLASGYISARQVYDFLL--SYELNVIKNESTYWIFFELLWREYFRLIF 292 Query: 296 AFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRM 355 Y + + +++ + + + WK+G T I+A M++L G++ NR+R Sbjct: 293 KKYGKKIFHRYGLGLSDE-KVSHSDENFELWKEGRTASNFINAGMKELKETGFLSNRMRQ 351 Query: 356 ITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQG 415 I AS+LV +L DWR G +F SQL+D D++SN+ W + A G D R FN Q Sbjct: 352 IVASYLVNELSCDWRAGAAWFESQLIDYDVSSNHCNWAYIAGHGTDPRG-GRYFNIQKQK 410 Query: 416 KRFDPQGTFIRHWL 429 +DP G++ + W Sbjct: 411 STYDPYGSYEKLWC 424 >gi|329850702|ref|ZP_08265547.1| deoxyribodipyrimidine photo-lyase [Asticcacaulis biprosthecum C19] gi|328841017|gb|EGF90588.1| deoxyribodipyrimidine photo-lyase [Asticcacaulis biprosthecum C19] Length = 280 Score = 250 bits (638), Expect = 4e-64, Method: Composition-based stats. Identities = 103/271 (38%), Positives = 142/271 (52%), Gaps = 21/271 (7%) Query: 206 PMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKE 265 +F GE A LR+F + Y + RD P TS LSP+L G +SPR+ L + Sbjct: 22 SIFKPGEAGARGALRRFLASGLADYEDGRDRPDKDLTSYLSPHLRFGEISPRRILTEL-D 80 Query: 266 EFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQA 325 + V + + A + EL+WREF +++ P + + F W +A Sbjct: 81 KVVRSTPRLVAPAEKFRKELVWREFNYNILDLQPEL-HTRNFRDDFSTFPWQSSDKDFRA 139 Query: 326 WKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDL 385 W +G TG+P++DA M+QL G+MHNR+RM+ ASFLVK LL+DWR GE++F LLD D Sbjct: 140 WARGETGYPLVDAGMKQLWQTGFMHNRVRMVCASFLVKHLLIDWRRGEQWFWDCLLDADP 199 Query: 386 ASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHS 445 ASN G WQW A G D+ PYFR+FNP Q +FDP + R + Sbjct: 200 ASNPGNWQWVAGCGADAAPYFRVFNPITQADKFDPDDIYRRKF----------------- 242 Query: 446 WLDKNDLSLNYPLPIVDHKKACHHTLNQYYA 476 DK ++ YP PIVDH A L+ Y + Sbjct: 243 --DKPRGTVPYPRPIVDHAFARERALDAYRS 271 >gi|221134513|ref|ZP_03560818.1| deoxyribodipyrimidine photolyase [Glaciecola sp. HTCC2999] Length = 441 Score = 250 bits (638), Expect = 4e-64, Method: Composition-based stats. Identities = 101/444 (22%), Positives = 178/444 (40%), Gaps = 32/444 (7%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPE-----------QWRQHGISA 55 M+ L W +DLR+ DN L D ++ ++I Q+ Q + Sbjct: 1 MNNGLYWFEHDLRLADNLPLQQTIAQID-QLHCIYIFNAADFSTTKKKGAGQFNQRHMGQ 59 Query: 56 RQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEIN 115 + FI +L +Q L G + + + ++ ++ Q T + + + Sbjct: 60 HRYRFIRQALDDLQSQLHTFGQQLHIY----YGEPLDIIEQLNTQFNFTHIGKHFHTGVY 115 Query: 116 EVRRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQ-------- 167 E L+ + ++ I + + L + + V++PFR+ + + Sbjct: 116 ERNLISALKIQYPNKTIINT-NSYTLYDIDDLPMSIENLPDVFSPFRRKVEKFCEARLPD 174 Query: 168 NLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFC--KE 225 N + + V + + + GE A + + + Sbjct: 175 NALPVSFPPVVVAEQNMPDELPAIQVCDKKLLAKNETVQRLIGGELKAKEQMHHYTYGTQ 234 Query: 226 KVYYYVEQRDIP-AIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNE 284 + Y E R+ + +S+LSP+L+ G +SPRQ + E + + E Sbjct: 235 ALSEYKETRNGLEGWEFSSKLSPWLAAGCISPRQVAAAITEY--EAQHGANDSTYWLFFE 292 Query: 285 LIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLN 344 L+WREF++ + + I + + + + W G T +PII+A MRQL Sbjct: 293 LLWREFFQWQQLKHGKALYHRNGIQQ-KSPRGFHNKKVFEDWVNGDTAYPIINACMRQLK 351 Query: 345 TIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVP 404 G+M NR R + AS + +L +DW+ G YF L+D D ASN G WQ+ A G+D Sbjct: 352 YTGFMSNRGRQLVASCFIHELGLDWQYGAAYFEEALIDFDPASNWGNWQYLAGVGSDPRG 411 Query: 405 YFRIFNPTIQGKRFDPQGTFIRHW 428 R FN Q + +DP G FI +W Sbjct: 412 C-RQFNLNKQTQTYDPHGEFIGYW 434 >gi|332534683|ref|ZP_08410514.1| deoxyribodipyrimidine photolyase, single-strand-specific [Pseudoalteromonas haloplanktis ANT/505] gi|332035895|gb|EGI72377.1| deoxyribodipyrimidine photolyase, single-strand-specific [Pseudoalteromonas haloplanktis ANT/505] Length = 435 Score = 250 bits (638), Expect = 5e-64, Method: Composition-based stats. Identities = 107/427 (25%), Positives = 187/427 (43%), Gaps = 26/427 (6%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQW-----RQHGISARQSHFIYASL 65 L WL+NDLR+TDN A+++ + + VF+ P + +Q + F+ SL Sbjct: 6 LYWLQNDLRLTDN-AIFSDLASQQCALDIVFVINPHWFKNNNYQQKSYGVHKQQFLMQSL 64 Query: 66 LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125 ++Q++L ++G + + + L + +Q + ++ Y+ Q+ + E R+ LL+ Sbjct: 65 YELQQALIERGQTLHVLEG----EPVSVLKARINEQNIDEVVYSEQFGLYEQRQINLLKA 120 Query: 126 RLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185 V L + ++ K +TPFRK + L +LP Sbjct: 121 HCP-NVRFTGAQQDTLFKQSDLPFDLSELPKHFTPFRKKVEAATSPISLSTLPNG----- 174 Query: 186 GPVTPSNIPRFFDYPFQAI--DPMFPIGEQNALHILRKFCKEK-VYYYVEQRD-IPAIQG 241 + P I P + I + + G ++A L ++ Y R+ + Sbjct: 175 --LLPQPITLCAKKPLERIANNGVMHGGFKSAQTHLEQYFSGLLPSTYKITRNELDGFNN 232 Query: 242 TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSV 301 T++ S +L+ G +S RQ + ++ + + + EL+WRE+++ Sbjct: 233 TTKFSTWLAFGCVSARQVYKAVEAYEHNQIT--NESTYWIKFELLWREYFKWHALKAGKS 290 Query: 302 CMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFL 361 T+ + + AW G T +P+++A M +LN G++ NR R I AS L Sbjct: 291 LFSFKGQKQTKPLTTFM-PNRFAAWCNGSTPYPLVNAIMNELNATGYISNRSRQIAASCL 349 Query: 362 VKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQ 421 V +L +DWR G YF QL+D D+A+N G WQ+ A G D R FN Q +FDP Sbjct: 350 VNELGLDWRYGAAYFEQQLIDYDVAANWGNWQYIAGVGVDPRG-GRHFNIEKQTLQFDPH 408 Query: 422 GTFIRHW 428 + W Sbjct: 409 AVYTNKW 415 >gi|323463244|gb|ADX75397.1| deoxyribodipyrimidine photolyase, putative [Staphylococcus pseudintermedius ED99] Length = 474 Score = 249 bits (637), Expect = 6e-64, Method: Composition-based stats. Identities = 133/478 (27%), Positives = 212/478 (44%), Gaps = 32/478 (6%) Query: 9 VHL-VWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67 +HL V L RI N L + D ++ +++ P + + ++ + + Sbjct: 1 MHLGVILNRVFRINHNPLLDYVITHQD-EIKQLYLILPIEDLSDAATVKREDYHHV---- 55 Query: 68 VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQ---YEINEVRRDKLLE 124 + H + + LD+ ++ + + Y + + Sbjct: 56 ----VKGFVSTLIKHNIHPYIVDYKNLDTLANALSLSHVLMAKDIMSYHRASYDYPHMKK 111 Query: 125 KRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL 184 + +H + + P N Q Y+++T F KA Q+L +S + + Sbjct: 112 RFEKHHISVIGQRVNHYFQPSKTFNQQHQPYQIFTYFYKANRQHLAHTPQKSTQLKQLAQ 171 Query: 185 TGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244 + FD E A F ++ Y + D S Sbjct: 172 YAAKGMNQSDLKFDKHTDE--------EACARQSWNHFLNHEITLYSQLADDITRNNISG 223 Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304 LS YL+ G+L R+ N L E + ++ S++ EL++REFY LM YP Sbjct: 224 LSRYLAYGLLDIREVINHLLEGY----DSDENSYESFIRELMFREFYYVLMTQYPDAAT- 278 Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364 + F +EW++ +AWK G TG+PIIDAAM++L G+MHNRLRMI + FL K Sbjct: 279 QSFSVKYRNMEWSERQSHFEAWKNGETGYPIIDAAMKKLLRTGYMHNRLRMIVSQFLTKH 338 Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424 L ++W GE +F L+D D ASN GWQW+ASTG D+VPYFR+FNP Q +RFD G F Sbjct: 339 LFMNWTWGEAHFRRYLIDYDNASNVHGWQWSASTGTDAVPYFRMFNPIRQSERFDAMGDF 398 Query: 425 IRHWLPELNNVPTQYIHAPHSWLDKND------LSLNYPLPIVDHKKACHHTLNQYYA 476 I+ L L +V +YIH P ++ + +YP IV+HK++ + + Q+ Sbjct: 399 IKEQLQILKDVKPKYIHNPSQYVTAIQQNHQIKIGEDYPKAIVNHKESRDYVMQQFKQ 456 >gi|76880306|dbj|BAE45919.1| cryptochrome [Hyla japonica] Length = 377 Score = 249 bits (637), Expect = 6e-64, Method: Composition-based stats. Identities = 89/385 (23%), Positives = 149/385 (38%), Gaps = 31/385 (8%) Query: 7 MSVH-LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASL 65 M V+ + W R LR+ DN AL SD + V+I P + + F+ L Sbjct: 1 MGVNAIHWFRKGLRLHDNPALKECIQGSDT-IRCVYILDPWFAGSSNVGINRWRFLLQCL 59 Query: 66 LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125 + +L + + + + ++++L E RD ++K Sbjct: 60 EDLDANLRKLNSRLFVIRG----QPADVFPRLFKEWKISRLSIEYDSEPFGKERDAAIKK 115 Query: 126 RLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLV-QADLRSLPVPAI-- 182 + S L L+ +++ P Q L+ + + +PV I Sbjct: 116 LASEAAVEVIVRISHTLY---DLDKIIELNGGQPPLTYKRFQTLISKMEPLEIPVETITA 172 Query: 183 ----RLTGPVTPSNIPR-----FFDYPFQA---IDPMFPIGEQNALHILRKFCKEKVYYY 230 + T PV+ + + + F ++P GE AL L + + K + Sbjct: 173 EVMGKCTTPVSDDHDEKYGVPSLEELGFDTEGLPSAVWPGGETEALTRLERHLERKAWVA 232 Query: 231 VEQRDIPAIQG----TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELI 286 +R T+ LSPYL G LS + +L + + ++ K S S +L+ Sbjct: 233 NFERPRMNANSLLASTTGLSPYLRFGCLSCCLFYFKLTDLY-KMVKKNSSPPLSLYGQLL 291 Query: 287 WREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTI 346 WREF+ P + P +I W+++ L W +G TGFP IDA M QL Sbjct: 292 WREFFYTAATNNPRFDKMEG-NPICVQIPWDRNPEALAKWAEGRTGFPWIDAIMTQLRQE 350 Query: 347 GWMHNRLRMITASFLVK-DLLVDWR 370 GW+H+ R A FL + DL + R Sbjct: 351 GWIHHLARHAVACFLTRGDLWISGR 375 >gi|329894043|ref|ZP_08270028.1| Deoxyribodipyrimidine photolyase, single-strand-specific [gamma proteobacterium IMCC3088] gi|328923215|gb|EGG30535.1| Deoxyribodipyrimidine photolyase, single-strand-specific [gamma proteobacterium IMCC3088] Length = 431 Score = 248 bits (634), Expect = 1e-63, Method: Composition-based stats. Identities = 114/426 (26%), Positives = 188/426 (44%), Gaps = 24/426 (5%) Query: 10 HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69 L+WL+NDLR+ DN A S+ ++ + G+ A+++ F+ +L ++ Sbjct: 3 TLLWLQNDLRLADNAGFQLASQASELLIVYCWPKPRPWCNLTGLGAQRTRFLSETLEHLR 62 Query: 70 KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH 129 LS+ G + + L + + L +R NE K L+ L Sbjct: 63 HQLSELGQDVFV----SVQHPEQVLPLMIEELGIEHLITSRPQAYNESNSLKALQDALDC 118 Query: 130 RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT---- 185 V + L + + K +TPFRK + + L + ++T Sbjct: 119 NVSVTR--GNTLFDEDDLTFDLADLPKHFTPFRKKMEAQPIAEPLATPKQLPPKITEVRY 176 Query: 186 GPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVY--YYVEQRD-IPAIQGT 242 GP +N +P++ GEQ AL ++ + ++ Y + R+ + + Sbjct: 177 GPTPSNNTRPHPTFPYR-------GGEQEALRRIKHWVFDRQAIATYKQTRNALDGLDNY 229 Query: 243 SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVC 302 S LSP+L+ G +SPR + ++ ++ + EL+WREF+ A V Sbjct: 230 SALSPWLATGAVSPRTILHHVQRFENEVT--ANESTYWVFFELLWREFFY-WRAQIDGVH 286 Query: 303 MGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLV 362 + P+ +K D W +G T +P+++A M QL G+M NR R I AS L+ Sbjct: 287 LFLPYGVARKKQLRTFDPRQFTRWCRGETNYPLVNALMHQLVRSGFMSNRGRQIAASSLI 346 Query: 363 KDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQG 422 DL VDWR G +F L+D D+ASN G WQ+ A G+D R FN Q +++DP+G Sbjct: 347 HDLGVDWRYGAAFFEKYLIDFDVASNYGNWQYIAGVGSDPRG-GRHFNIDKQTEQYDPKG 405 Query: 423 TFIRHW 428 FI W Sbjct: 406 LFITQW 411 >gi|308049734|ref|YP_003913300.1| deoxyribodipyrimidine photo-lyase (single-stranded DNA-specific) [Ferrimonas balearica DSM 9799] gi|307631924|gb|ADN76226.1| deoxyribodipyrimidine photo-lyase (single-stranded DNA-specific) [Ferrimonas balearica DSM 9799] Length = 435 Score = 248 bits (633), Expect = 2e-63, Method: Composition-based stats. Identities = 107/429 (24%), Positives = 175/429 (40%), Gaps = 23/429 (5%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQ-----WRQHGISARQSHFI 61 M L+W R+DLR+ DN AL A +A ++ ++ P W+ + FI Sbjct: 1 MKRALLWFRHDLRLDDNPALLRAAQAKEA-LLCLYCIEPRWFVADNWQSRRVGDHPWRFI 59 Query: 62 YASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDK 121 SLL + L G D + + KL + E R+ Sbjct: 60 SESLLDLANRLEALGQQLVIR----IGDPNTLIPGLMRNHWIDKLICTAPFGEEERRQYL 115 Query: 122 LLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPA 181 L++ + C+ + L + ++ ++ FR + + + + R L P Sbjct: 116 ALKQEVGEH-RCEVWQSHTLFTLEQLPFALDELPPTFSQFR----RRVQRLEWRPLYPPV 170 Query: 182 IRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEK-VYYYVEQRD-IPAI 239 L P+ ++ +P + G+ A L + +Y + R+ + Sbjct: 171 TELPKPLALTSETPPP--VSTPPNPQYQGGQTAAEAHLAHYLAGAAPKHYKQTRNALDDW 228 Query: 240 QGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYP 299 +++LSP+L+ G LS R +L E + EL+WRE+++ L + Sbjct: 229 SSSTKLSPWLAQGCLSARTAVAQL--EAYEAQHGANESTEWIQVELLWREYFQWLALAHG 286 Query: 300 SVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITAS 359 + W QG T +PI++AAM QLN G++ NR R + AS Sbjct: 287 HRLFAFTGTSGVRR-PCCFYPERFARWCQGQTPYPIVNAAMNQLNATGFLSNRARQLVAS 345 Query: 360 FLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFD 419 LV +L +DWR G YF QL+D D+A N G WQ+ A G D + R F+ Q +D Sbjct: 346 ALVHELGLDWRYGAAYFQQQLIDHDVACNYGNWQYLAGVGADPRGW-RHFDLDKQTALYD 404 Query: 420 PQGTFIRHW 428 P G F+R W Sbjct: 405 PDGAFVRQW 413 >gi|297197474|ref|ZP_06914871.1| deoxyribodipyrimidine photolyase [Streptomyces sviceus ATCC 29083] gi|297146740|gb|EDY60352.2| deoxyribodipyrimidine photolyase [Streptomyces sviceus ATCC 29083] Length = 321 Score = 248 bits (633), Expect = 2e-63, Method: Composition-based stats. Identities = 109/334 (32%), Positives = 171/334 (51%), Gaps = 15/334 (4%) Query: 147 ILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDP 206 ++ + V+TP+ + Q ++ L + + + V +P D Sbjct: 2 VVPAGSDHFAVFTPYFRRWSQERLRDPLGAP--RTVTVPDGVGSEPLPSRDDLS-GLSAG 58 Query: 207 MFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEE 266 + GE L + + + Y +++D A TS+LSP+L G LSP + +R + Sbjct: 59 LAAGGETEGRRRLAVWLRSGLAAYEDRQDDLAGDATSRLSPHLHFGTLSPVELVHRARRA 118 Query: 267 FVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAW 326 GA +++ +L WR+F+R ++A P+ ++AW Sbjct: 119 -------GGPGAEAFVRQLAWRDFHRQVLAARPAAAGADYRTQHDRWRSERTAGDDIEAW 171 Query: 327 KQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLA 386 K+G TG+PI+DAAMRQL GWMHNR R++TASFL K L VDWRIG +F+ L+DGDLA Sbjct: 172 KEGRTGYPIVDAAMRQLRHEGWMHNRGRLLTASFLTKTLYVDWRIGARHFLDLLVDGDLA 231 Query: 387 SNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSW 446 +N WQW A TG D+ P R+ NP Q KR+DP GT++R W+PEL + +H P Sbjct: 232 NNQLNWQWMAGTGTDTRP-NRVLNPVAQAKRYDPDGTYVRRWVPELAALEGPAVHEPWKL 290 Query: 447 LDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQ 480 + +L+YP P+V+ + L ++ A+ + Sbjct: 291 RGLDRAALDYPDPLVELSEG----LARFKRARGR 320 >gi|145605082|ref|XP_365369.2| hypothetical protein MGG_02071 [Magnaporthe oryzae 70-15] gi|145012947|gb|EDJ97588.1| hypothetical protein MGG_02071 [Magnaporthe oryzae 70-15] Length = 614 Score = 247 bits (631), Expect = 3e-63, Method: Composition-based stats. Identities = 115/532 (21%), Positives = 184/532 (34%), Gaps = 78/532 (14%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 + W R DLR+ D+ AL AA A + +F P + + ++ + Sbjct: 7 IYWFRTDLRLHDSPALQAALDLDPAVLWPIFTWDPHYVYRSRGGLNRWQYLLDCQNDLSA 66 Query: 71 S---LSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127 S L+ + +F + +VT L + + + +RD++++K Sbjct: 67 SITNLNPRSKLFVLREAPQ-----SLFPKLFKAWKVTHLVFEKDTDAYARQRDEVVKKAA 121 Query: 128 QHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 Q + + L +I+ P V A + S+P P Sbjct: 122 QAAGVKVITRYGRTLWDSDAIVKANGG-----EPTMSMARLRTVGAKVGSIPRPIPAPKA 176 Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIP-AIQGTSQL 245 P +P F+ + + R KEK Y + + AI+ +L Sbjct: 177 LPDPGEMPLDFNLDLPDVGQDY-------NAKWRSEGKEKAYGAIAGPNGDFAIETLEEL 229 Query: 246 ------SPYLSIGVLSPRQCWNRLK-----EEFVDLLIKPKS-GAFSWLNELIWREFYRH 293 +PY L+ R+ ++ + + K S S +L++R+ Y Sbjct: 230 GYPPATTPYKGGESLALRELDAIIENQDTVDAYNQAKKKGASLPPESLTGQLLFRDMYFA 289 Query: 294 LMAFYPSVCMGKPFIPWTEKIEW-------------------------NKDSHLLQAWKQ 328 A I W + + W+ Sbjct: 290 AQAAIGPCFSQTAGNAHCRFIPWHLPSHVEDNAVSGQVLRKFEYEVDSEQAESWFRRWEA 349 Query: 329 GYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD-LLVDWRIGEEYFMSQLLDGDLAS 387 G TGFP IDA MRQL GW+H+ R A FL + V W G + F LLD + A Sbjct: 350 GQTGFPWIDALMRQLRVEGWIHHLGRHSVACFLTRGGCYVSWERGLDVFEELLLDHEPAC 409 Query: 388 NNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWL 447 N G WQW S YFR ++P GK++DP GTFIR W+PEL ++ +YI+ P Sbjct: 410 NAGNWQW-LSCTAFFSQYFRCYSPISFGKKWDPDGTFIRKWVPELASLDKKYIYEPWKAP 468 Query: 448 DKN-----------------DLSLNYPLPIVDHKKACHHTLNQYYAAKKQSL 482 + S Y P+ D + + A L Sbjct: 469 EAELRRAGVVMVSEGGVGGGGASGTYFTPMFDFDERRRVCMRLMKQAYDAGL 520 >gi|240116558|ref|ZP_04730620.1| putative deoxyribodopyrimidine photolyase [Neisseria gonorrhoeae PID18] gi|260439681|ref|ZP_05793497.1| putative deoxyribodopyrimidine photolyase [Neisseria gonorrhoeae DGI2] gi|268602227|ref|ZP_06136394.1| deoxyribodopyrimidine photolyase [Neisseria gonorrhoeae PID18] gi|291042923|ref|ZP_06568664.1| deoxyribodopyrimidine photolyase [Neisseria gonorrhoeae DGI2] gi|268586358|gb|EEZ51034.1| deoxyribodopyrimidine photolyase [Neisseria gonorrhoeae PID18] gi|291013357|gb|EFE05323.1| deoxyribodopyrimidine photolyase [Neisseria gonorrhoeae DGI2] Length = 432 Score = 247 bits (631), Expect = 3e-63, Method: Composition-based stats. Identities = 114/465 (24%), Positives = 182/465 (39%), Gaps = 54/465 (11%) Query: 1 MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHF 60 + A T + LVW R +LRI DN AL AA + VI ++I E R++ F Sbjct: 9 LYADTRAAHTLVWFRQNLRIRDNAALCAAVAEG-SPVIGIWIDDAETDN-----PRRAAF 62 Query: 61 IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120 S ++ + L+++GI S L ++ + + + + + D Sbjct: 63 YRQSAAELAQGLARRGIPLY------TAASPAGLVRLAVRLNIRAVIADESHTFADKLAD 116 Query: 121 KLLEKRLQHRVICKSF-DDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPV 179 L L I +F +D + + + + +R+ + + P Sbjct: 117 NALWHELDKHGIALTFVNDRSVFGKTDLTPGNGTAHTDFNRYREVWLDRFSKQP----PA 172 Query: 180 PAIRLTGPVTPSNIPRFFDYPFQAIDPMF---PIGEQNALHILRKFCKEKVYYYVEQRDI 236 + P P D +F GE A R+F ++ Y +D Sbjct: 173 GSDLFAAYRQPFPENLPAPPPAALSDGIFLPQNGGETAAWRQWRRFLEQA-ASYSVLKDF 231 Query: 237 PAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMA 296 P+ + TS + YLS+G +SPR E ++ W + +I R+F+ L Sbjct: 232 PSRKNTSLMGAYLSVGCISPRLLARESLERRLNA----------WADNIIRRDFFLQLAL 281 Query: 297 FYPSVCMGKPFIPWTEKIEWNKDSHL---LQAWKQGYTGFPIIDAAMRQLNTIGWMHNRL 353 + + + + L W+QG TG PIIDAAMR L+ G +H L Sbjct: 282 QH------------ADDDPSDGNPEHTLRLTLWQQGRTGIPIIDAAMRCLHKTGSLHPAL 329 Query: 354 RMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTI 413 R ++A F L + R GE +F QL D D A N G W+ AAS + Sbjct: 330 RRLSADFFCHVLNLPRREGEIWFARQLTDFDAAINQGNWRLAASRHT-------CPDIAA 382 Query: 414 QGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPL 458 R DP GTFI+ +PEL ++ +H P + D + YP Sbjct: 383 ASYRTDPDGTFIKRHIPELAHLSADTVHTPWRFACSVD-THGYPA 426 >gi|240113824|ref|ZP_04728314.1| putative deoxyribodopyrimidine photolyase [Neisseria gonorrhoeae MS11] gi|268599892|ref|ZP_06134059.1| deoxyribodopyrimidine photolyase [Neisseria gonorrhoeae MS11] gi|268584023|gb|EEZ48699.1| deoxyribodopyrimidine photolyase [Neisseria gonorrhoeae MS11] Length = 432 Score = 247 bits (631), Expect = 3e-63, Method: Composition-based stats. Identities = 114/465 (24%), Positives = 181/465 (38%), Gaps = 54/465 (11%) Query: 1 MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHF 60 + A T + LVW R +LRI DN AL AA + VI + I E R++ F Sbjct: 9 LYADTRAAHTLVWFRQNLRIRDNAALCAAVAEG-SPVIGICIDDAETDN-----PRRAAF 62 Query: 61 IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120 S ++ + L+++GI S L ++ + + + + + D Sbjct: 63 YRQSAAELAQGLARRGIPLY------TAASPAGLVRLAVRLNIRAVIADESHTFADKLAD 116 Query: 121 KLLEKRLQHRVICKSF-DDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPV 179 L L I +F +D + + + + +R+ + + P Sbjct: 117 NALWHELDKHGIALTFVNDRSVFGKTDLTPDNGTAHTDFNRYREVWLDRFSKQP----PA 172 Query: 180 PAIRLTGPVTPSNIPRFFDYPFQAIDPMF---PIGEQNALHILRKFCKEKVYYYVEQRDI 236 + P P D +F GE A R+F ++ Y +D Sbjct: 173 GSDLFAAYRQPFPENLPAPPPAALSDGIFLPQNGGETAAWRQWRRFLEQA-ASYSVLKDF 231 Query: 237 PAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMA 296 P+ + TS + YLS+G +SPR E ++ W + +I R+F+ L Sbjct: 232 PSRKNTSLMGAYLSVGCISPRLLARESLERRLNA----------WADNIIRRDFFLQLAL 281 Query: 297 FYPSVCMGKPFIPWTEKIEWNKDSHL---LQAWKQGYTGFPIIDAAMRQLNTIGWMHNRL 353 + + + + L W+QG TG PIIDAAMR L+ G +H L Sbjct: 282 QH------------ADDDPSDGNPEHTLRLTLWQQGRTGIPIIDAAMRCLHKTGSLHPAL 329 Query: 354 RMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTI 413 R ++A F L + R GE +F QL D D A N G W+ AAS + Sbjct: 330 RRLSADFFCHVLNLPRREGEIWFARQLTDFDAAINQGNWRLAASRHT-------CPDIAA 382 Query: 414 QGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPL 458 R DP GTFI+ +PEL ++ +H P + D + YP Sbjct: 383 ASYRTDPDGTFIKRHIPELAHLSADTVHTPWRFACSVD-THGYPA 426 >gi|23954322|emb|CAC82537.1| Cryptochrome 2 [Oryza sativa Indica Group] Length = 433 Score = 247 bits (630), Expect = 3e-63, Method: Composition-based stats. Identities = 88/262 (33%), Positives = 136/262 (51%), Gaps = 11/262 (4%) Query: 217 HILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKS 276 +L +F + Y + TS LSPYL G +S R+ + ++ + + + S Sbjct: 1 KMLEEFVSHGLLEYSKHGMKVEGATTSLLSPYLHFGEVSVRKVYQLVRMQQIKWENEGTS 60 Query: 277 GAFS----WLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTG 332 A ++ + RE+ R+L +P K + + W D ++W+QG TG Sbjct: 61 EAEESIHFFMRSIGLREYSRYLCFNFP-FTHEKSLLGNLKHYPWKVDEERFKSWRQGMTG 119 Query: 333 FPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGW 392 +P++DA MR+L GW HNR+R+I +SF VK LL+ W G +YF LLD DL S+ GW Sbjct: 120 YPLVDAGMRELWATGWTHNRIRVIISSFAVKFLLIPWTWGMKYFWDVLLDADLESDILGW 179 Query: 393 QWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWL----- 447 Q+ + + D R+ NP +QG+++DP G ++R W+PEL +PT++IH P Sbjct: 180 QYISGSLPDGHELSRLDNPEVQGQKYDPDGVYVRTWIPELARMPTEWIHHPWDAPSCILE 239 Query: 448 -DKNDLSLNYPLPIVDHKKACH 468 +L NYP PIVD A Sbjct: 240 VAGVELGFNYPKPIVDLHIARE 261 >gi|118594165|ref|ZP_01551512.1| deoxyribodipyrimidine photolyase [Methylophilales bacterium HTCC2181] gi|118439943|gb|EAV46570.1| deoxyribodipyrimidine photolyase [Methylophilales bacterium HTCC2181] Length = 426 Score = 247 bits (630), Expect = 3e-63, Method: Composition-based stats. Identities = 112/434 (25%), Positives = 190/434 (43%), Gaps = 26/434 (5%) Query: 10 HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPE-----QWRQHGISARQSHFIYAS 64 + W RNDLR+ DN AL +A +NSD ++ V I +W+ + F+Y Sbjct: 3 SIYWFRNDLRLEDNAALNSALNNSD-HILFVHIDDDMNDAECEWQFSRRGQHRKIFMYQG 61 Query: 65 LLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLE 124 L ++Q +L G +H + + + ++ E +++L++ Sbjct: 62 LEELQLNLKSYG----HHLNRFVGKTNLIFQELINRHHINSVYCESINAFEEQAQERLIK 117 Query: 125 KRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL 184 + V S+ S + P + + V+T FRK + + + I+ Sbjct: 118 EL---GVNLYSYYQSSMYMPHQLPFDIKDLPDVFTHFRKNIETTGIVPEEPIALSGQIKN 174 Query: 185 TGPVTPSNIPRFFDY-------PFQAIDPMFPIGEQNA-LHILRKFCKEKVYYYVEQRD- 235 T P+ S + F D F GE+ A LHI + F + Y R+ Sbjct: 175 TIPILDSKTNLTQELTEDYSQSSFPISDKKFKGGERTAQLHIDQYFQSDYPNSYKYSRNN 234 Query: 236 IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLM 295 + I+ +++ SP+LS+G +S Q ++ LK + + EL+WR+++R L Sbjct: 235 LMGIECSTKFSPWLSLGFISANQIYSALKRY--EQRNSANDSTYWIYFELLWRDYFRFLF 292 Query: 296 AFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRM 355 Y + K + + K + + WK G T I+A + +LN G++ NR+R Sbjct: 293 MKYGKIFFYKNGLGLSNK-SFQHNEEKFNEWKNGKTPSSFINAGISELNQTGFISNRMRQ 351 Query: 356 ITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQG 415 I AS+LV +L DWR G +F QL+D D+ SN G W + A G D R FN Q Sbjct: 352 ILASYLVNELACDWRAGAAWFEHQLIDYDVYSNYGNWSYIAGVGTDPRG-GRHFNVDKQK 410 Query: 416 KRFDPQGTFIRHWL 429 +DP G++ + W+ Sbjct: 411 NTYDPDGSYEKEWI 424 >gi|296314842|ref|ZP_06864783.1| deoxyribodipyrimidine photolyase [Neisseria polysaccharea ATCC 43768] gi|296838342|gb|EFH22280.1| deoxyribodipyrimidine photolyase [Neisseria polysaccharea ATCC 43768] Length = 430 Score = 247 bits (630), Expect = 4e-63, Method: Composition-based stats. Identities = 117/470 (24%), Positives = 183/470 (38%), Gaps = 59/470 (12%) Query: 1 MKATTAMSVH-----LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISA 55 M + A +V LVW R +LRI DN AL AA +I ++I E Sbjct: 1 MPSEHAATVAHAMYTLVWFRQNLRIRDNAALCAAVAEG-LPIIGIWIDDAETDN-----P 54 Query: 56 RQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEIN 115 R++ F S ++ + L+ +GI + S L ++ + + + + Sbjct: 55 RRAAFYRQSAAELAQGLAGRGIPLY------TEVSPAGLVRLAVRLNIRAVIADESHTFA 108 Query: 116 EVRRDKLLEKRLQHRVICKSF-DDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADL 174 + D L L I +F +D + + + + +RKA + + Sbjct: 109 DKLTDNALWHELDKHGIRLTFVNDRSVFDQTDLPPDNGTAHTDFNRYRKAWLDCFSKQP- 167 Query: 175 RSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMF---PIGEQNALHILRKFCKEKVYYYV 231 P + + P P D +F GE A R+F ++ Y Sbjct: 168 ---PAGSDIFSTYRQPFPENLPAPQPAALSDSIFLPQNGGETAAWRQWRRFLEQA-DSYS 223 Query: 232 EQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFY 291 +D P+ + TS + YLS G +SPR E ++ W + +I R+F+ Sbjct: 224 VLKDFPSRKNTSLMGAYLSAGCISPRLLARESLERRLNA----------WADNIIRRDFF 273 Query: 292 RHLMAFYPSVCMGKPFIPWTEKIEWNKDSHL---LQAWKQGYTGFPIIDAAMRQLNTIGW 348 L + + + + L W+QG TG PIIDAAMR L+ G Sbjct: 274 LQLALQH------------ADDGPSDGNPEHTLRLTLWQQGQTGIPIIDAAMRCLHKTGS 321 Query: 349 MHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRI 408 +H LR ++A F L + R GE +F QL D D A N G W+ AAS Sbjct: 322 LHPALRRLSADFFCHVLNLPRREGEIWFARQLTDFDAAINQGNWRLAASRHTYP------ 375 Query: 409 FNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPL 458 + + DP GTF+R +PEL ++P IH P D + YP Sbjct: 376 -DIAAAAHKTDPDGTFVRRHIPELAHLPAAVIHTPWRAAGSID-THGYPA 423 >gi|319893699|ref|YP_004150574.1| Deoxyribodipyrimidine photolyase [Staphylococcus pseudintermedius HKU10-03] gi|317163395|gb|ADV06938.1| Deoxyribodipyrimidine photolyase [Staphylococcus pseudintermedius HKU10-03] Length = 474 Score = 247 bits (630), Expect = 4e-63, Method: Composition-based stats. Identities = 131/478 (27%), Positives = 212/478 (44%), Gaps = 32/478 (6%) Query: 9 VHL-VWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67 +HL V L RI N L + D ++ +++ P + + ++ + + Sbjct: 1 MHLGVILNRVFRINHNPLLDYVITHQD-EIKQLYLILPIEDLSDAATVKREDYHHV---- 55 Query: 68 VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQ---YEINEVRRDKLLE 124 + H + + LD+ ++ + + Y + + Sbjct: 56 ----VKGFVSTLIKHNIHPYIVDYKNLDTLANALSLSHVLMAKDIMSYHRASYDYPHMKK 111 Query: 125 KRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL 184 + +H + + P N Q Y+++T F KA Q+L ++ + + Sbjct: 112 RFEKHHISVIGQRVNHYFQPSKTFNQQHQPYQIFTYFYKANRQHLAHTPQKNTQLKQLAQ 171 Query: 185 TGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244 + FD E A F ++ Y + D S Sbjct: 172 YAAKGMNQSDLKFDKHTDE--------EAYARQSWNHFLNHEITLYSQLADDITRNNISG 223 Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304 LS YL+ G+L R+ N L E + ++ S++ EL++REFY LM YP Sbjct: 224 LSRYLAYGLLDIREVINHLLEGY----DSDENSYESFIRELMFREFYYVLMTQYPDAAT- 278 Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364 + F +EW++ +AWK G TG+PIIDAAM++L G+MHNRLRMI + FL K Sbjct: 279 QSFSVKYRNMEWSERQSHFEAWKNGETGYPIIDAAMKKLLRTGYMHNRLRMIVSQFLTKH 338 Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424 L ++W GE +F L+D D ASN GWQW+ASTG D+VPYFR+FNP Q +RFD G F Sbjct: 339 LFMNWTWGEAHFRRYLIDYDNASNVHGWQWSASTGTDAVPYFRMFNPIRQSERFDAMGDF 398 Query: 425 IRHWLPELNNVPTQYIHAPHSWLDKND------LSLNYPLPIVDHKKACHHTLNQYYA 476 I+ L L +V +YIH P ++ + +YP I++HK++ + + Q+ Sbjct: 399 IKEQLQILKDVKPKYIHNPSQYVTAIQQNHQIKIGEDYPKAIINHKESRDYVMQQFKQ 456 >gi|194099599|ref|YP_002002730.1| putative deoxyribodopyrimidine photolyase [Neisseria gonorrhoeae NCCP11945] gi|240014955|ref|ZP_04721868.1| putative deoxyribodopyrimidine photolyase [Neisseria gonorrhoeae DGI18] gi|240017403|ref|ZP_04723943.1| putative deoxyribodopyrimidine photolyase [Neisseria gonorrhoeae FA6140] gi|240118782|ref|ZP_04732844.1| putative deoxyribodopyrimidine photolyase [Neisseria gonorrhoeae PID1] gi|240122024|ref|ZP_04734986.1| putative deoxyribodopyrimidine photolyase [Neisseria gonorrhoeae PID24-1] gi|254494581|ref|ZP_05107752.1| deoxyribodopyrimidine photolyase [Neisseria gonorrhoeae 1291] gi|268604493|ref|ZP_06138660.1| deoxyribodopyrimidine photolyase [Neisseria gonorrhoeae PID1] gi|193934889|gb|ACF30713.1| putative deoxyribodopyrimidine photolyase [Neisseria gonorrhoeae NCCP11945] gi|226513621|gb|EEH62966.1| deoxyribodopyrimidine photolyase [Neisseria gonorrhoeae 1291] gi|268588624|gb|EEZ53300.1| deoxyribodopyrimidine photolyase [Neisseria gonorrhoeae PID1] Length = 432 Score = 246 bits (629), Expect = 5e-63, Method: Composition-based stats. Identities = 114/465 (24%), Positives = 182/465 (39%), Gaps = 54/465 (11%) Query: 1 MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHF 60 + A T + LVW R +LRI DN AL AA + VI ++I E R++ F Sbjct: 9 LYADTRAAHTLVWFRQNLRIRDNAALCAAVAEG-SPVIGIWIDDAETDN-----PRRAAF 62 Query: 61 IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120 S ++ + L+++GI S L ++ + + + + + D Sbjct: 63 YRQSAAELAQGLARRGIPLY------TAASPAGLVRLAVRLNIRAVIADESHTFADKLAD 116 Query: 121 KLLEKRLQHRVICKSF-DDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPV 179 L L I +F +D + + + + +R+ + + P Sbjct: 117 NALWHELDKHGIALTFVNDRSVFGKTDLTPDNGTAHTDFNRYREVWLDRFSKQP----PA 172 Query: 180 PAIRLTGPVTPSNIPRFFDYPFQAIDPMF---PIGEQNALHILRKFCKEKVYYYVEQRDI 236 + P P D +F GE A R+F ++ Y +D Sbjct: 173 GSDLFAAYRQPFPENLPAPPPAALSDGIFLPQNGGETAAWRQWRRFLEQA-ASYSVLKDF 231 Query: 237 PAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMA 296 P+ + TS + YLS+G +SPR E ++ W + +I R+F+ L Sbjct: 232 PSRKNTSLMGAYLSVGCISPRLLARESLERRLNA----------WADNIIRRDFFLQLAL 281 Query: 297 FYPSVCMGKPFIPWTEKIEWNKDSHL---LQAWKQGYTGFPIIDAAMRQLNTIGWMHNRL 353 + + + + L W+QG TG PIIDAAMR L+ G +H L Sbjct: 282 QH------------ADDDPSDGNPEHTLRLTLWQQGRTGIPIIDAAMRCLHKTGSLHPAL 329 Query: 354 RMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTI 413 R ++A F L + R GE +F QL D D A N G W+ AAS + Sbjct: 330 RRLSADFFCHVLNLPRREGEIWFARQLTDFDAAINQGNWRLAASRHT-------CPDIAA 382 Query: 414 QGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPL 458 R DP GTFI+ +PEL ++ +H P + D + YP Sbjct: 383 ASYRTDPDGTFIKRHIPELAHLSADTVHTPWRFACSVD-THGYPA 426 >gi|59802028|ref|YP_208740.1| putative deoxyribodopyrimidine photolyase [Neisseria gonorrhoeae FA 1090] gi|239999799|ref|ZP_04719723.1| putative deoxyribodopyrimidine photolyase [Neisseria gonorrhoeae 35/02] gi|240081545|ref|ZP_04726088.1| putative deoxyribodopyrimidine photolyase [Neisseria gonorrhoeae FA19] gi|240124322|ref|ZP_04737278.1| putative deoxyribodopyrimidine photolyase [Neisseria gonorrhoeae PID332] gi|240126533|ref|ZP_04739419.1| putative deoxyribodopyrimidine photolyase [Neisseria gonorrhoeae SK-92-679] gi|240128995|ref|ZP_04741656.1| putative deoxyribodopyrimidine photolyase [Neisseria gonorrhoeae SK-93-1035] gi|268595609|ref|ZP_06129776.1| deoxyribodopyrimidine photolyase [Neisseria gonorrhoeae 35/02] gi|268597641|ref|ZP_06131808.1| deoxyribodopyrimidine photolyase [Neisseria gonorrhoeae FA19] gi|268682948|ref|ZP_06149810.1| deoxyribodopyrimidine photolyase [Neisseria gonorrhoeae PID332] gi|268685113|ref|ZP_06151975.1| deoxyribodopyrimidine photolyase [Neisseria gonorrhoeae SK-92-679] gi|268687375|ref|ZP_06154237.1| deoxyribodopyrimidine photolyase [Neisseria gonorrhoeae SK-93-1035] gi|293398069|ref|ZP_06642274.1| deoxyribodipyrimidine photo-lyase [Neisseria gonorrhoeae F62] gi|59718923|gb|AAW90328.1| putative deoxyribodopyrimidine photolyase [Neisseria gonorrhoeae FA 1090] gi|268548998|gb|EEZ44416.1| deoxyribodopyrimidine photolyase [Neisseria gonorrhoeae 35/02] gi|268551429|gb|EEZ46448.1| deoxyribodopyrimidine photolyase [Neisseria gonorrhoeae FA19] gi|268623232|gb|EEZ55632.1| deoxyribodopyrimidine photolyase [Neisseria gonorrhoeae PID332] gi|268625397|gb|EEZ57797.1| deoxyribodopyrimidine photolyase [Neisseria gonorrhoeae SK-92-679] gi|268627659|gb|EEZ60059.1| deoxyribodopyrimidine photolyase [Neisseria gonorrhoeae SK-93-1035] gi|291611332|gb|EFF40402.1| deoxyribodipyrimidine photo-lyase [Neisseria gonorrhoeae F62] gi|317165088|gb|ADV08629.1| putative deoxyribodopyrimidine photolyase [Neisseria gonorrhoeae TCDC-NG08107] Length = 432 Score = 246 bits (629), Expect = 5e-63, Method: Composition-based stats. Identities = 114/465 (24%), Positives = 182/465 (39%), Gaps = 54/465 (11%) Query: 1 MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHF 60 + A T + LVW R +LRI DN AL AA + VI ++I E R++ F Sbjct: 9 LYADTRAAHTLVWFRQNLRIRDNAALCAAVAEG-SPVIGIWIDDAETDN-----PRRAAF 62 Query: 61 IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120 S ++ + L+++GI S L ++ + + + + + D Sbjct: 63 YRQSAAELAQGLARRGIPLY------TAASPAGLVRLAVRLNIRAVIADESHTFADKLAD 116 Query: 121 KLLEKRLQHRVICKSF-DDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPV 179 L L I +F +D + + + + +R+ + + P Sbjct: 117 NALWHELDKHGIALTFVNDRSVFGKTDLTPDNGTAHTDFNRYREVWLDRFSKQP----PA 172 Query: 180 PAIRLTGPVTPSNIPRFFDYPFQAIDPMF---PIGEQNALHILRKFCKEKVYYYVEQRDI 236 + P P D +F GE A R+F ++ Y +D Sbjct: 173 GSDLFAAYRQPFPENLPAPPPAALSDGIFLPQNGGETAAWRQWRRFLEQA-ASYSVLKDF 231 Query: 237 PAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMA 296 P+ + TS + YLS+G +SPR E ++ W + +I R+F+ L Sbjct: 232 PSRKNTSLMGAYLSVGCISPRLLARESLERRLNA----------WADNIIRRDFFLQLAL 281 Query: 297 FYPSVCMGKPFIPWTEKIEWNKDSHL---LQAWKQGYTGFPIIDAAMRQLNTIGWMHNRL 353 + + + + L W+QG TG PIIDAAMR L+ G +H L Sbjct: 282 QH------------ADDDPSDGNPEHTLRLTLWQQGRTGIPIIDAAMRCLHKTGSLHPAL 329 Query: 354 RMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTI 413 R ++A F L + R GE +F QL D D A N G W+ AAS + Sbjct: 330 RRLSADFFCHVLNLPRREGEIWFARQLTDFDAAINQGNWRLAASRHT-------CPDIAA 382 Query: 414 QGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPL 458 R DP GTFI+ +PEL ++ +H P + D + YP Sbjct: 383 ASYRTDPDGTFIKRHIPELAHLSADTVHTPWRFACSVD-THGYPA 426 >gi|323493058|ref|ZP_08098192.1| deoxyribodipyrimidine photolyase [Vibrio brasiliensis LMG 20546] gi|323312706|gb|EGA65836.1| deoxyribodipyrimidine photolyase [Vibrio brasiliensis LMG 20546] Length = 449 Score = 246 bits (629), Expect = 5e-63, Method: Composition-based stats. Identities = 113/441 (25%), Positives = 177/441 (40%), Gaps = 23/441 (5%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFI---ATPEQWR---QHGISARQSHFIY 62 + L W NDLR+ DN L A D ++I ++ +P R Q S + F+ Sbjct: 5 IGLYWFTNDLRVHDNPLLSKAAAEVD-QLICLYCYPSVSPYLARYSQQAKWSEPKLQFLD 63 Query: 63 ASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKL 122 ASL + SL+ + + V+ L+ + +E Sbjct: 64 ASLHCLNLSLNALNQRLLVVDSHPYH----AIKDLVYGLGVSHLYVDAVAGCDEQSIIDS 119 Query: 123 LEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAI 182 L+ + + + L + + +T FRK + +V LP+ + Sbjct: 120 LKAEFDALDVAQK-EVRTLFTLEQLPFELSALPDTFTQFRKQVEPLVV-----PLPISWV 173 Query: 183 RLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNAL-HILRKFCKEKVYYYVEQRD-IPAIQ 240 + + + +F GEQ L H R F Y E R+ + + Sbjct: 174 KRLPSLPDTLSLPGISLTHHGGSALFEGGEQAGLAHCRRYFSSACPSEYKETRNALDGLD 233 Query: 241 GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPS 300 +++ SP+L+ G LS + + LK + L + EL+WRE++ Y Sbjct: 234 YSTKFSPWLAHGCLSAKTIYAMLKRY--ERLNGANESTYWIYFELLWREYFYWYARRYRQ 291 Query: 301 VCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASF 360 I + + +H Q WK G T F I++A M QLN G+M NR R + AS Sbjct: 292 KLFRFGGIRNQPPLT-SFYAHRFQQWKNGQTPFAIVNACMHQLNQTGYMSNRGRQLVASC 350 Query: 361 LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDP 420 L+ +L +DWR G YF SQL+D D+ASN G WQ+ A G D R FN Q + +DP Sbjct: 351 LIHELGLDWRYGAAYFESQLIDYDVASNWGNWQYLAGVGADPRG-SRQFNLEKQTQMYDP 409 Query: 421 QGTFIRHWLPELNNVPTQYIH 441 FI W + P + Sbjct: 410 YQEFIDRWQGRCDASPLDSVD 430 >gi|149925501|ref|ZP_01913765.1| deoxyribodipyrimidine photolyase [Limnobacter sp. MED105] gi|149825618|gb|EDM84826.1| deoxyribodipyrimidine photolyase [Limnobacter sp. MED105] Length = 453 Score = 246 bits (628), Expect = 6e-63, Method: Composition-based stats. Identities = 102/489 (20%), Positives = 188/489 (38%), Gaps = 50/489 (10%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSD--AKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 + ++W + DLR++D+ L+ A N+ V+ ++I P Q + + F++ L Sbjct: 1 MQVLWFKRDLRLSDHMPLFEAMRNAKHHGLVLPLYIHEPSQILDAHTARQHQLFVHECLD 60 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEV-RRDKLLEK 125 +Q+ ++ G ++++ L + Q + T L+ +++ +RD+ + Sbjct: 61 DLQQQFAKVGGYLH----EELGEAVDVLAALHAQFKFTHLWAHQETTQFAQYQRDRAVAA 116 Query: 126 RLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185 + + LP ++ T +A + + R+L Sbjct: 117 WCKSEGVVFHE-----LPQNNVQRARGNKADFQTYLNRAAQEEIKNPAGRNLQAFFAPRP 171 Query: 186 GPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCK-EKVYYYVEQRDIP--AIQGT 242 PV + + G A + KF K+ Y P A G Sbjct: 172 PPVL--KRCNVPNAAGEDKPLRMKGGRTQARAVAAKFFTPAKLKSYPFSISSPLKAWNGC 229 Query: 243 SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKS--------GAFSWLNELIWREFYRHL 294 S+LSPYL+ GV+S R+ +L + + S A +++ LIWR+ Y Sbjct: 230 SRLSPYLAYGVVSDREVLQKLNALVNTVHGQGDSVLISKVEDAARFYVDRLIWRQGYLQQ 289 Query: 295 MAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLR 354 + + + + + L AW+ G TGF IDA L GW++ R R Sbjct: 290 LENHTGLETD----AFYGDEPAEVNQEFLNAWQHGRTGFAYIDACQHFLQQTGWLNMRAR 345 Query: 355 MITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQ 414 SF L + W+ Y Q LD + A + G + A+ T + S +++P Q Sbjct: 346 ATLVSFACVQLGLPWQPVALYLAQQFLDFEPAIHYGQVRIASGTSHFSQ--MLVYDPLKQ 403 Query: 415 GKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQY 474 DP+G F++ WLP + YP PI+D+ ++ + Sbjct: 404 QAEQDPKGEFVKRWLP-------------------GYGTAGYPAPIIDNAESLKQGKARL 444 Query: 475 YAAKKQSLL 483 +A ++ LL Sbjct: 445 HAMRQNRLL 453 >gi|293321543|emb|CAZ66367.1| cryptochrome [Suberites domuncula] Length = 517 Score = 246 bits (628), Expect = 7e-63, Method: Composition-based stats. Identities = 116/482 (24%), Positives = 191/482 (39%), Gaps = 39/482 (8%) Query: 9 VHLVWLRND-LRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQ---SHFIYAS 64 + W R D LR+ DN A A D AVFI P + Q F+ + Sbjct: 21 TTVHWFRLDALRLHDNPAFVDAVKT-DGNFKAVFIIDPWFNANYNNGGPQVNVWRFLLEA 79 Query: 65 LLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLE 124 L + L +K + + L + V K+ + +E + + Sbjct: 80 LHDLDSRLQKK--PYCARLNVLYGQPTMILPELYKKWNVKKITFQASQVSSESMKHDGII 137 Query: 125 KRL--QHRVICKSFDDSVLLPPGSILN-HALQMYKVYTPFRKALIQNLVQADLRSLPVP- 180 K L Q V S+ L P +++ + ++ Y FR+ + A P P Sbjct: 138 KILSEQQNVQAVSYFSHTLYDPANVIALNNGRVPLSYKEFRRLMPLMGKPASPIPEPHPM 197 Query: 181 ------AIRLTGPVTPSNIPRFFDYPFQAIDPM----FPIGEQNALHILRKFCKEKVYYY 230 P IP+ D + + GE AL L FC + Sbjct: 198 SLCMKAPPSELVPEPEGKIPKLQDLGLSDEFALYTNSWVGGETEALSRLSSFCSRRAAIP 257 Query: 231 VEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREF 290 E + T LSPY+ G LS RQ +++L + F K + L+ REF Sbjct: 258 NEPVHWLMSKDT--LSPYIKFGCLSVRQLFSQLLQ-FASTSSKGQELFELLTKNLLLREF 314 Query: 291 YRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMH 350 + + P + + ++ W ++ +QA++ G TG+P IDA +RQ+ GW H Sbjct: 315 AFLVGSSSPKFDVMEG-NSLCIQLPWESNNVFIQAFRNGQTGYPWIDAIIRQIRQDGWAH 373 Query: 351 NRLRMITASFLVKD-LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIF 409 R A FL + L + W +G+E+F ++D +L ++ W +S + Sbjct: 374 FLARQSIAVFLTRGYLWISWVLGKEFFQEFMIDFELPVSSVCW-MQSSCSGFFCTQIESY 432 Query: 410 NPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPH---------SWLDKNDLSLNYPLPI 460 +P + GK+ D G +I+ ++PEL + P++Y+H P SWL + YP PI Sbjct: 433 DPCLVGKQIDTDGHYIKTYVPELKDFPSEYVHQPWKCSSLHTEASWLCDREQ---YPKPI 489 Query: 461 VD 462 +D Sbjct: 490 ID 491 >gi|327271582|ref|XP_003220566.1| PREDICTED: cryptochrome-1-like [Anolis carolinensis] Length = 438 Score = 246 bits (627), Expect = 8e-63, Method: Composition-based stats. Identities = 97/329 (29%), Positives = 147/329 (44%), Gaps = 21/329 (6%) Query: 170 VQADLRSLPVPAIRLTGPVTPSNIPRFF------DYPFQAID-PMFPIGEQNALHILRKF 222 + + L + P+ ++ + D + GE L L + Sbjct: 72 PEMPVEDLTAENSQKLCPLPEEDLDECYRVPLPEDLGISKEHLSPWRGGETTGLQRLEEH 131 Query: 223 CKEKVY--YYVEQRDIPA--IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGA 278 K + + + + R IP + T+ LSPY S+G LS R + RL + + Sbjct: 132 MKNQGWIAKFTKPRTIPNSLLPSTTGLSPYFSLGCLSVRMFFYRLSKIYAQSK-NHSLPP 190 Query: 279 FSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDA 338 S +L+WREF+ + + P+ P +IEW +D+ L WK TGFP IDA Sbjct: 191 VSLQGQLLWREFFYTVASATPNFTKM-VGNPICLQIEWYEDAEKLHKWKTAQTGFPWIDA 249 Query: 339 AMRQLNTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAAS 397 M QL GW+H+ R A FL + DL + W G + F LLD D + N G W W S Sbjct: 250 IMTQLRQEGWIHHLARHAVACFLTRGDLWISWEEGMKVFEELLLDSDYSINAGNWMW-LS 308 Query: 398 TGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND------ 451 Y RIF P GKR DP+G +IR +LP L N P++YI+ P + + Sbjct: 309 ASAFFHQYSRIFCPVRFGKRTDPEGHYIRKYLPVLKNFPSKYIYEPWTAPAEAQREAGCI 368 Query: 452 LSLNYPLPIVDHKKACHHTLNQYYAAKKQ 480 + YP P+V+HK+ + L +++ Sbjct: 369 IGKEYPFPMVNHKEVSDNNLQLMKQVREE 397 >gi|313200806|ref|YP_004039464.1| cryptochrome, dash family [Methylovorus sp. MP688] gi|312440122|gb|ADQ84228.1| cryptochrome, DASH family [Methylovorus sp. MP688] Length = 467 Score = 245 bits (625), Expect = 1e-62, Method: Composition-based stats. Identities = 109/447 (24%), Positives = 182/447 (40%), Gaps = 41/447 (9%) Query: 11 LVWLRNDLRITDNKALYAACHNS---DAKVIAVFIATPEQ-----WRQHGISARQSHFIY 62 + W R DLR+ D AL A + + ++ VF+ P + W ++ + ++ Sbjct: 29 IFWFRRDLRLHDQVALTWAARQAAHIGSWLLPVFVHDPAESGLTRWGFARMAPHRRAWLT 88 Query: 63 ASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKL 122 +++ + L G + D + + + V EI + Sbjct: 89 SAVDALAGQLRALGSDLVPLHGDSVDTLVRLVRALGNPLLV-------CEEIAAPEEQAV 141 Query: 123 LEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQ--------ADL 174 + V K+ S L+ ++ + +T FR AL + VQ L Sbjct: 142 VAALRAAGVKVKTVWQSSLVAVENLPFDPQAVPDTFTTFRHALERGHVQAARPLPSIKQL 201 Query: 175 RSLPVPAIRLTGPVTPSNIPRFFDYPFQAI----DPMFPIG-------EQNALHILRKFC 223 LP A+ P ++ + FP+G EQ AL L+++C Sbjct: 202 PPLPSHALLNAIPSEVASDGTDHAMASEPWPDDARSAFPLGSSGFDGSEQAALQHLQQYC 261 Query: 224 KEK-VYYYVEQRD-IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSW 281 + + + Y R+ + + +S+ SP+L+ G LS RQ W ++ + + Sbjct: 262 QRRLPHSYKSTRNGLIGVDYSSKWSPWLATGALSARQAWAAIQA--FEAEHGANESTYWL 319 Query: 282 LNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMR 341 EL+WR+ +R L + + E + D W +G TG P IDA MR Sbjct: 320 WFELLWRDHFRWLHFKHGNRLYRA--RGLGEAPVPSHDPDHFARWCRGETGQPFIDAGMR 377 Query: 342 QLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGND 401 +L G++ NR+R AS+L+ DL DWR G +F SQLLD D+ SN G W + + G D Sbjct: 378 ELAATGYLSNRMRQNVASYLIHDLGCDWRAGAAWFESQLLDYDVYSNQGNWLYLSGRGTD 437 Query: 402 SVPYFRIFNPTIQGKRFDPQGTFIRHW 428 R FNP Q + +D G++ W Sbjct: 438 PRQGRR-FNPDKQAQDYDADGSYRALW 463 >gi|224002573|ref|XP_002290958.1| predicted protein [Thalassiosira pseudonana CCMP1335] gi|220972734|gb|EED91065.1| predicted protein [Thalassiosira pseudonana CCMP1335] Length = 420 Score = 245 bits (625), Expect = 1e-62, Method: Composition-based stats. Identities = 102/423 (24%), Positives = 174/423 (41%), Gaps = 41/423 (9%) Query: 54 SARQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTK----LFYN 109 R+ F ++ ++ +L ++G + + S + Sbjct: 6 GPRRVQFALEAVADLRSNLEKRGSGLVVAVGNPEEILATIATSAVESSGDNGALINVVCQ 65 Query: 110 RQYEINEVRRDKLLEKRLQHRVICKS------FDDSVLLPPGSILNHAL--QMYKVYTPF 161 + E+ DK + L + KS S + P ++ + +TPF Sbjct: 66 EEVCSEELTVDKAIRSSLAKAMKTKSKFNFETVWGSTMYDPETLPFDGGVFGIPDTFTPF 125 Query: 162 RKALIQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPM-------------- 207 R + + P + + +P FD + A D Sbjct: 126 RNKVEKICEIGAPLDCPKDEYL---SLPKNYMPTLFDLGYNAEDIESVSSVDSRTALPVN 182 Query: 208 FPIGEQNALHILRKFCKEKV--YYYVEQRD-IPAIQGTSQLSPYLSIGVLSPRQCWNRLK 264 + GE AL ++ + +K Y + R+ + +++ +P+L++G +SPR R Sbjct: 183 YRGGETFALQRVKDYIWDKNLLKVYFDTRNGMIGSDYSTKFAPWLALGNVSPRYIA-REC 241 Query: 265 EEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK----PFIPWTEKIEWNKDS 320 + + ++ KS + + EL+ R+ ++ + +E+ +W D Sbjct: 242 SRYEEQRVQNKS-TYWVVFELLIRDHFKFFAKKHGDKVFYLTGTIGKQRGSERKKWGMDR 300 Query: 321 HLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQL 380 +QAW+ G TGFP++DA MR+L G+M NR R ASFL D+ +DWR G EYF L Sbjct: 301 KKIQAWQDGMTGFPLVDANMRELAATGFMSNRGRQNVASFLTIDMNMDWRYGGEYFEETL 360 Query: 381 LDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYI 440 LD D+ SN G W AA + FN Q K +D G ++R W PEL NVP +Y+ Sbjct: 361 LDYDVHSNWGNWCSAAGMTGGRLNR---FNIVKQSKDYDFGGEYVRLWCPELKNVPDKYV 417 Query: 441 HAP 443 H+P Sbjct: 418 HSP 420 >gi|330447966|ref|ZP_08311614.1| cryptochrome DASH [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] gi|328492157|dbj|GAA06111.1| cryptochrome DASH [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] Length = 441 Score = 244 bits (624), Expect = 2e-62, Method: Composition-based stats. Identities = 109/426 (25%), Positives = 183/426 (42%), Gaps = 17/426 (3%) Query: 10 HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQ-----WRQHGISARQSHFIYAS 64 L WL DLR+ DN+ + + ++ V+ P+ ++ + + F+ S Sbjct: 5 ALYWLTQDLRLHDNEIFHQ-VRDHADNLLCVYFIEPQWQTFNRYQLKSMGEIRHRFLLQS 63 Query: 65 LLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLE 124 L + +L++ G Q L + Q R+ ++ +R E ++ + ++ Sbjct: 64 LQTLHSNLTRFGQQLVVVQAEPLLS----LPALIQQHRINVIYRSRHCGWYEQQQWQYIK 119 Query: 125 KRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL 184 + H + D L + H M Y+ FRK + ++ P Sbjct: 120 QYFPH-LRFVEVDTHTLYSQQQLPFHLSDMPSGYSKFRKLIERDTNVTKPLPQPEYLPPP 178 Query: 185 TGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHIL-RKFCKEKVYYYVEQRDIPA-IQGT 242 + + Y + + GE AL L + F + Y E R+ A + + Sbjct: 179 PKMNSSDYLDIGRVYIADNSNVEWQGGENAALMHLKQYFSCDAPANYKETRNALAGWELS 238 Query: 243 SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVC 302 ++ SP+L+ G LS + LK+ + + S + EL+WREF+ A Sbjct: 239 TKFSPWLACGSLSAKTIMAALKDY--EQNVTANSSTYWIFFELLWREFF-QWHAHVVGRH 295 Query: 303 MGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLV 362 + + +++ + + W G T +P+++A M+QLN G+M NR R I AS LV Sbjct: 296 LYRFSGVQNKRLLTSFYPSRFKQWCSGSTPYPLVNAFMKQLNQTGYMSNRGRQIVASCLV 355 Query: 363 KDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQG 422 +L +DWR G YF QL+D D+ASN G WQ+ A G DS R F+ Q + FDP Sbjct: 356 NELSLDWRYGAAYFEQQLIDHDMASNWGNWQYIAGVGTDSRDK-RWFDIEKQTRLFDPDH 414 Query: 423 TFIRHW 428 FIRHW Sbjct: 415 AFIRHW 420 >gi|260778085|ref|ZP_05886978.1| deoxyribodipyrimidine photolyase single-strand-specific [Vibrio coralliilyticus ATCC BAA-450] gi|260606098|gb|EEX32383.1| deoxyribodipyrimidine photolyase single-strand-specific [Vibrio coralliilyticus ATCC BAA-450] Length = 440 Score = 244 bits (623), Expect = 2e-62, Method: Composition-based stats. Identities = 111/447 (24%), Positives = 189/447 (42%), Gaps = 32/447 (7%) Query: 6 AMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWR-------QHGISARQS 58 V L W DLRI DN L+ A D+ ++ V+ P+ R + + + + Sbjct: 2 KQKVGLYWFTCDLRIQDNPLLWQASCEVDS-LLCVYCL-PQMDRYLVRYSQEQSLGSERL 59 Query: 59 HFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVR 118 F+ S+ + +SL G D ++ L+ + VT + + +NE Sbjct: 60 AFLQQSVACLSQSLENMGQKLLVFD----DRPLDVLNRFIQDYGVTHFYCDLFSGVNEQS 115 Query: 119 RDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQAD--LRS 176 L + L + C + L + ++ +T FRK + + D L + Sbjct: 116 VVDRLSQ-LHSDLTCIQEPVNTLFSQRLLPFTLGELPSTFTQFRKQVEHLPIGVDSSLSA 174 Query: 177 LPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNAL-HILRKFCKEKVYYYVEQRD 235 LP P ++ + + +F GE L H F +Y + R+ Sbjct: 175 LPEPPAQVISTLNME----------EVSCQLFAGGETLGLAHCSGYFATSLASHYKQTRN 224 Query: 236 -IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHL 294 + +++ SP+L++G LSP++ + L+E + + EL+WRE++ Sbjct: 225 ELDGFDFSTKFSPWLAVGCLSPKRIFVLLQEY--EQREGANDSTYWIFFELLWREYFHWY 282 Query: 295 MAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLR 354 + + + + S+ Q WK G T +PI++A M QL G+M NR R Sbjct: 283 GKLWGRRLFKFSGLKDATPLT-SFYSYRFQQWKHGETQYPIVNACMNQLKATGYMSNRGR 341 Query: 355 MITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQ 414 + AS L+ +L +DWR G YF +QL+D D+ASN G WQ+ A G D R FN Q Sbjct: 342 QLVASCLIHELGLDWRYGAAYFETQLVDYDVASNWGNWQYLAGVGADPRDSRR-FNLAKQ 400 Query: 415 GKRFDPQGTFIRHWLPELNNVPTQYIH 441 + +DP FI W +P+ ++ Sbjct: 401 TEMYDPDKVFIERWHGNKVIIPSDHVD 427 >gi|153837520|ref|ZP_01990187.1| cryptochrome dash [Vibrio parahaemolyticus AQ3810] gi|149749116|gb|EDM59921.1| cryptochrome dash [Vibrio parahaemolyticus AQ3810] Length = 445 Score = 244 bits (622), Expect = 3e-62, Method: Composition-based stats. Identities = 115/444 (25%), Positives = 185/444 (41%), Gaps = 23/444 (5%) Query: 6 AMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFI---ATP---EQWRQHGISARQSH 59 + L W DLR+ DN L A D +++ ++ TP ++ + + Sbjct: 2 KKKIGLYWFTFDLRLHDNLLLVNASSFLD-ELVCLYCRPSVTPFLHHFAQEATLGRARQK 60 Query: 60 FIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRR 119 FI ASL ++ +L Q G + + L VT L+ + +E Sbjct: 61 FIDASLCELNDALGQLGQRLWTLDLPPY----QALKYAIQYLGVTHLYADAMAGSDEQSI 116 Query: 120 DKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPV 179 L+ H VI + S L + + + +T FRK + + + + Sbjct: 117 LHKLQDEYPHLVIVQHAVRS-LFDESKLPFTLPDLPETFTQFRKCVEGIDIAHPIDA--- 172 Query: 180 PAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNAL-HILRKFCKEKVYYYVEQRD-IP 237 RL + +P + F +F GE + L H R F Y E R+ + Sbjct: 173 -PSRLPPTPKDAQLPTLSSFYFDES-ALFSGGEWSGLAHCRRYFSSGLASSYKETRNGLD 230 Query: 238 AIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAF 297 + +++ SP+L++G +SPR + LK+ + + EL+WRE++ Sbjct: 231 GMAYSTKFSPWLALGCVSPRMIYAMLKQY--EQTQGANDSTYWIYFELLWREYFYWYARC 288 Query: 298 YPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMIT 357 Y I + + +H Q WK G T +PI++A M QL+ G+M NR R + Sbjct: 289 YQQRLFRFGGIRNQPPLT-SFYAHRFQQWKNGTTPYPIVNACMHQLDHTGYMSNRGRQLV 347 Query: 358 ASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKR 417 AS LV +L +DWR G YF +QL+D D+ SN G WQ+ A G D R FN Q + Sbjct: 348 ASCLVHELGLDWRYGAAYFETQLIDYDVGSNWGNWQYLAGVGADPRG-SRQFNLEKQTQM 406 Query: 418 FDPQGTFIRHWLPELNNVPTQYIH 441 +DP FI W + P + Sbjct: 407 YDPNHEFIVRWQGRDSRAPQDVVD 430 >gi|308126141|ref|ZP_05908184.2| cryptochrome dash [Vibrio parahaemolyticus AQ4037] gi|308110402|gb|EFO47942.1| cryptochrome dash [Vibrio parahaemolyticus AQ4037] Length = 445 Score = 244 bits (622), Expect = 3e-62, Method: Composition-based stats. Identities = 115/431 (26%), Positives = 182/431 (42%), Gaps = 23/431 (5%) Query: 6 AMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFI---ATP---EQWRQHGISARQSH 59 + L W DLR+ DN L A D +++ ++ TP ++ + + Sbjct: 2 KKKIGLYWFTFDLRLHDNLLLVNASSFLD-ELVCLYCRPSVTPFLHHFAQEATLGRARQK 60 Query: 60 FIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRR 119 FI ASL ++ +L Q G + + L VT L+ + +E Sbjct: 61 FIDASLCELNDALGQLGQRLWTLDLPPY----QALRYAIQYLGVTHLYADAMAGSDEQSI 116 Query: 120 DKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPV 179 L+ H VI + S L + + + +T FRK + + + + Sbjct: 117 LHKLQDEYPHLVIVQHAVRS-LFDESKLPFTLPDLPETFTQFRKCVEGIDIAHPIDA--- 172 Query: 180 PAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNAL-HILRKFCKEKVYYYVEQRD-IP 237 RL + +P + F +F GE + L H R F Y E R+ + Sbjct: 173 -PSRLPPMPKDAQLPTLSSFYFDES-ALFSGGEWSGLAHCRRYFSSGLASSYKETRNGLD 230 Query: 238 AIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAF 297 + +++ SP+L++G +SPR + LK+ + + EL+WRE++ Sbjct: 231 GMAYSTKFSPWLALGCVSPRMIYAMLKQY--EQTQGANDSTYWIYFELLWREYFYWYARC 288 Query: 298 YPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMIT 357 Y I + + +H Q WK G T +PI++A M QLN G+M NR R + Sbjct: 289 YQQRLFRFGGIRNQPPLT-SFYAHRFQQWKNGTTQYPIVNACMHQLNHTGYMSNRGRQLV 347 Query: 358 ASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKR 417 AS LV +L +DWR G YF +QL+D D+ SN G WQ+ A G D R FN Q + Sbjct: 348 ASCLVHELGLDWRYGAAYFETQLIDYDVCSNWGNWQYLAGVGADPRG-SRQFNLEKQTQM 406 Query: 418 FDPQGTFIRHW 428 +DP FI W Sbjct: 407 YDPNHEFIERW 417 >gi|332141437|ref|YP_004427175.1| deoxyribodipyrimidine photolyase, putative [Alteromonas macleodii str. 'Deep ecotype'] gi|327551459|gb|AEA98177.1| deoxyribodipyrimidine photolyase, putative [Alteromonas macleodii str. 'Deep ecotype'] Length = 478 Score = 243 bits (621), Expect = 4e-62, Method: Composition-based stats. Identities = 91/459 (19%), Positives = 173/459 (37%), Gaps = 41/459 (8%) Query: 1 MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHF 60 + T + ++WL+ DLR+ D++ L+ A S+ +++ ++ P + +S R HF Sbjct: 2 LSDNTKPPITIIWLKRDLRLRDHEPLFRAVA-SNERILLLYCWEPSLIEEPHMSVRHWHF 60 Query: 61 IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKL----------FYNR 110 I S+ + L + V H ++++ L + + YNR Sbjct: 61 IQQSIDDINGQLPEHVNVLTLH-----MEAVDALAFISRFYTINAVRSYQEIGLKVTYNR 115 Query: 111 QYEINEVRRDK----------LLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTP 160 + ++ + + L HR K+ + + + + Sbjct: 116 DLRVANHLNNRRIPFLEAKCGAVIRGLPHRAQWKANWEEYFAESTYDYDLKRANWVKWNV 175 Query: 161 FRKALIQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILR 220 +L +++ +L + + M P GE+ A +L+ Sbjct: 176 HVDIQKASLTLSEVSALYAAKKYINKDYLSKYCGVLSEDGLIDFSAMQPGGERRAWQVLK 235 Query: 221 KFCKEKVYYYVEQRDIP--AIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLI------ 272 F ++ YY + P A + S+LSPYL+ G +S +Q + ++ + Sbjct: 236 DFFNDRGQYYHQHISKPEYARRACSRLSPYLAWGNISIKQVYQSVQRQKHKKRALPIHEK 295 Query: 273 -KPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHL---LQAWKQ 328 + + + L W + S+ +P E + W Sbjct: 296 KRWSRALSALTSRLHWHCHFIQKFESEHSIEW-RPMNSAYENFPYIDGPEAERRFYHWSI 354 Query: 329 GYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASN 388 G TG+P++DA MR L G+++ R+R + SFL L V W Y +Q LD + + Sbjct: 355 GQTGYPLVDACMRALRQTGYLNFRMRAMVTSFLCHHLNVHWIKAAHYLATQFLDFEPGIH 414 Query: 389 NGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRH 427 Q AS + R++NP Q K+ DP+G FI+ Sbjct: 415 YPQIQMQASVT--GIHTVRLYNPASQSKKLDPEGEFIKK 451 >gi|126665677|ref|ZP_01736658.1| Deoxyribodipyrimidine photolyase [Marinobacter sp. ELB17] gi|126629611|gb|EBA00228.1| Deoxyribodipyrimidine photolyase [Marinobacter sp. ELB17] Length = 519 Score = 243 bits (620), Expect = 5e-62, Method: Composition-based stats. Identities = 114/509 (22%), Positives = 194/509 (38%), Gaps = 51/509 (10%) Query: 9 VHLVWLRNDLRITDNKALYAACH--NSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 + + WL+ +LR+ D++ + + KV+ ++ PE +Q +S + FI +L Sbjct: 1 MQIFWLKRNLRLQDSEPFFESMRAFRKKGKVLPLYCHEPELIQQPDVSRQHQLFIQETLE 60 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEV-RRDKLLEK 125 ++ + G ++++ LD Q +TK++ +++ N +RDK + Sbjct: 61 ELDRDFQSIGGKLL----QAVGETVDVLDRIHRVQPLTKIWTHQETTQNSQFQRDKAVAA 116 Query: 126 RLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185 + + L I + + F ++ L L A R Sbjct: 117 WCADHGVEL-----LELAQNGIARGSQKPELFPPYFACSVSSKLRDPIGTDL---AERFA 168 Query: 186 GPVTPSNIPRFFDYPFQAIDPM-FPIGEQNALHILRKFCKEKV-YYYVEQRDIP--AIQG 241 PS P+ P+ G A+ L +F Y Q P A QG Sbjct: 169 PLPFPSCDPKAIPKAAGTDKPLRQKGGRSQAIKNLNRFFTVPYLKQYPFQISSPNTAWQG 228 Query: 242 TSQLSPYLSIGVLSPRQCWNRL--------KEEFVDLLIKPKSGAFSWLNELIWREFYRH 293 S++S YL+ G++S R+ + + D K + A +L+ L WR Y Sbjct: 229 CSRISTYLAYGIVSDRELFQAVDRVVTDAHSRMNADQFGKFQENARFYLDRLSWRRQYMQ 288 Query: 294 LMAFYPSVCMGKPFIPWTEKIEWNKDS----------------HLLQAWKQGYTGFPIID 337 P + + E + AWKQG TGFP ID Sbjct: 289 TFEASPELEFQCMLAQFNGVREADYSEGHSLTHSSTPSSGQSEQHFTAWKQGLTGFPYID 348 Query: 338 AAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAAS 397 AAMR LN GW++ RLR SF +L + EY ++ LD + ++ Q Sbjct: 349 AAMRFLNQTGWINMRLRATLVSFATMNLWIPTTKVAEYLATEFLDYEPGIHHVIHQII-- 406 Query: 398 TGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHS----WLDKNDLS 453 G +++P QG+ D G FIR W+PEL +VP +H + ++ Sbjct: 407 AGTTEFNELMVYDPVKQGRDHDLDGHFIRKWVPELADVPGSELHDLAKTAFRLSKQAEIR 466 Query: 454 --LNYPLPIVDHKKACHHTLNQYYAAKKQ 480 + YP IVDH+ ++ ++ Sbjct: 467 GYMPYPEAIVDHRATAKKAKDRVSDLRRS 495 >gi|325141516|gb|EGC63986.1| putative deoxyribodipyrimidine photolyase [Neisseria meningitidis 961-5945] Length = 433 Score = 243 bits (619), Expect = 7e-62, Method: Composition-based stats. Identities = 116/465 (24%), Positives = 182/465 (39%), Gaps = 54/465 (11%) Query: 1 MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHF 60 + A T + LVW R +LRI DN AL AA VI ++I E R++ F Sbjct: 9 LYADTCAAHTLVWFRQNLRIRDNAALCAAVAEG-LPVIGIWIDDAETDN-----PRRAAF 62 Query: 61 IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120 S ++ + L+ +GI F S L ++ + + + + D Sbjct: 63 YRQSAAELAQGLAGRGIPFY------TAASPAGLVRLAVRLNTRAVIADESHTFADKLTD 116 Query: 121 KLLEKRLQHRVICKSF-DDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPV 179 L L I +F +D + ++ Y + +R+ + + P Sbjct: 117 NALWHELDKHGIALTFVNDRAVFGKTDLIPDGGTAYADFDRYREVWLDRFSKQP----PA 172 Query: 180 PAIRLTGPVTPSNIPRFFDYPFQAIDPMF---PIGEQNALHILRKFCKEKVYYYVEQRDI 236 + P P D +F GE A R+F ++ Y +D Sbjct: 173 GSDLFAAYRQPFPENLSAPQPAVLSDGIFLPRNGGETAAWRQWRRFLEQA-DSYSVLKDF 231 Query: 237 PAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMA 296 P+ + TS + YLS G +SPR + E ++ W + +I R+F+ L Sbjct: 232 PSRKNTSLMGAYLSAGCISPRLLARKSLERRLNA----------WTDNIIRRDFFLQLAL 281 Query: 297 FYPSVCMGKPFIPWTEKIEWNKDSHL---LQAWKQGYTGFPIIDAAMRQLNTIGWMHNRL 353 + T+ + + L W+QG TG PIIDAAMR L+ G +H L Sbjct: 282 QH------------TDDDPSDGNPEHTLRLTLWQQGRTGIPIIDAAMRCLHKTGSLHPAL 329 Query: 354 RMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTI 413 R ++A F L + R GE +F QL D D A N G W+ AAS + Sbjct: 330 RRLSADFFCHVLNLPRREGEIWFARQLTDFDAAINQGNWRLAASRHT-------CPDIAA 382 Query: 414 QGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPL 458 + DP GTF+R +PEL ++ +H P + D + YP Sbjct: 383 AAHKTDPDGTFVRRHIPELAHLSADTVHTPWRFACSVD-THGYPA 426 >gi|254805669|ref|YP_003083890.1| Deoxyribodipyrimidine photolyase [Neisseria meningitidis alpha14] gi|254669211|emb|CBA08013.1| Deoxyribodipyrimidine photolyase [Neisseria meningitidis alpha14] Length = 433 Score = 243 bits (619), Expect = 7e-62, Method: Composition-based stats. Identities = 115/465 (24%), Positives = 179/465 (38%), Gaps = 54/465 (11%) Query: 1 MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHF 60 + A T + LVW R +LRI DN AL AA VI ++I E R++ F Sbjct: 9 LYADTRAAHTLVWFRQNLRIRDNAALCAAVAEG-LPVIGIWIDDAETDN-----PRRAAF 62 Query: 61 IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120 S ++ + L+ +GI S L ++ + + + + + D Sbjct: 63 YRQSAAELAQGLAGRGIPLY------TAASPAELVRLAVRLNIRAVIADESHTFADKLAD 116 Query: 121 KLLEKRLQHRVICKSF-DDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPV 179 L L I +F +D + ++ + + +R+ + + P Sbjct: 117 NALWHELDKHGIALTFVNDRAVFGKTDLIPDGGTAHTDFDRYREVWLDRFSKQP----PA 172 Query: 180 PAIRLTGPVTPSNIPRFFDYPFQAIDPMFPI---GEQNALHILRKFCKEKVYYYVEQRDI 236 P P D +F GE A R+F ++ Y +D Sbjct: 173 GPDLFAAYRQPFPENLSAPPPAALSDGIFLPQNSGETAAWRQWRRFLEQA-DSYSVLKDF 231 Query: 237 PAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMA 296 P+ + TS + YLS G +SPR E ++ W + +I R+F+ L Sbjct: 232 PSRKHTSLMGAYLSAGCISPRLLARESLERRLNA----------WADNIIRRDFFLQLAL 281 Query: 297 FYPSVCMGKPFIPWTEKIEWNKDSHL---LQAWKQGYTGFPIIDAAMRQLNTIGWMHNRL 353 Y + + + L W+QG TG PIIDAAMR L+ G +H L Sbjct: 282 QY------------ADDDPSDGNPEHTLRLTLWQQGQTGIPIIDAAMRCLHKTGSLHPAL 329 Query: 354 RMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTI 413 R ++A F L + R GE +F QL D D A N G W+ AAS + Sbjct: 330 RRLSADFFCHVLNLPRREGEIWFARQLTDFDAAINQGNWRLAASRHT-------CPDIAA 382 Query: 414 QGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPL 458 R DP GTFI+ +PEL ++ +H P + D + YP Sbjct: 383 ASYRTDPDGTFIKRHIPELAHLSADTVHTPWRFACSVD-THGYPA 426 >gi|325131645|gb|EGC54351.1| putative deoxyribodipyrimidine photolyase [Neisseria meningitidis M6190] gi|325139007|gb|EGC61554.1| putative deoxyribodipyrimidine photolyase [Neisseria meningitidis ES14902] Length = 433 Score = 242 bits (618), Expect = 9e-62, Method: Composition-based stats. Identities = 114/465 (24%), Positives = 180/465 (38%), Gaps = 54/465 (11%) Query: 1 MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHF 60 + A T + LVW R +LRI DN AL AA VI ++I E R++ F Sbjct: 9 LYADTCAAHTLVWFRQNLRIRDNAALCAAVAEG-LPVIGIWIDDAETDN-----PRRAAF 62 Query: 61 IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120 S ++ + L+ +GI S L ++ + + + + + D Sbjct: 63 YRQSAAELAQGLAGRGIPLY------TAASPAELVRLAVRLNIRAVIADESHTFADKLAD 116 Query: 121 KLLEKRLQHRVICKSF-DDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPV 179 L L I +F +D + ++ + + +R+ + + P Sbjct: 117 NALWHELDKHGIALTFVNDRAVFGKTDLIPDGGTAHTDFDRYREVWLDRFSKQP----PA 172 Query: 180 PAIRLTGPVTPSNIPRFFDYPFQAIDPMFPI---GEQNALHILRKFCKEKVYYYVEQRDI 236 P P D +F GE A R+F ++ Y +D Sbjct: 173 GPDLFAAYRQPFPENLSAPPPAALSDGIFLPQNSGETAAWRQWRRFLEQA-DSYSVLKDF 231 Query: 237 PAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMA 296 P+ + TS + YLS G +SPR E ++ W + +I R+F+ L Sbjct: 232 PSRKHTSLMGAYLSAGCISPRLLARESLERRLNA----------WADNIIRRDFFLQLAL 281 Query: 297 FYPSVCMGKPFIPWTEKIEWNKDSHL---LQAWKQGYTGFPIIDAAMRQLNTIGWMHNRL 353 + T+ + + L W+QG TG PIIDAAMR L+ G +H L Sbjct: 282 QH------------TDDDPSDGNPEHTLRLTLWQQGQTGIPIIDAAMRCLHKTGSLHPAL 329 Query: 354 RMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTI 413 R ++A F L + R GE +F QL D D A N G W+ AAS + Sbjct: 330 RRLSADFFCHVLNLPRREGEIWFARQLTDFDAAINQGNWRLAASRHT-------CPDIAA 382 Query: 414 QGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPL 458 + DP GTF+R +PEL ++ +H P + D + YP Sbjct: 383 AAHKTDPDGTFVRRHIPELAHLSADTVHTPWRFACSVD-THGYPA 426 >gi|260772745|ref|ZP_05881661.1| deoxyribodipyrimidine photolyase single-strand-specific [Vibrio metschnikovii CIP 69.14] gi|260611884|gb|EEX37087.1| deoxyribodipyrimidine photolyase single-strand-specific [Vibrio metschnikovii CIP 69.14] Length = 451 Score = 242 bits (618), Expect = 9e-62, Method: Composition-based stats. Identities = 107/440 (24%), Positives = 179/440 (40%), Gaps = 24/440 (5%) Query: 7 MSV-HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQH-----GISARQSHF 60 MS+ L W NDLRI+DN L A NS I + Q + F Sbjct: 1 MSIRSLYWFTNDLRISDNPLLTQAAQNSHQLTCCYLIPSLTPLDQRFQVVASNGLAKQRF 60 Query: 61 IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120 + SL + L G Q +++ L + L+ + + + Sbjct: 61 LLESLADLDAKLQTLGQSLQIATG----EAVSQLCQFIELTEANHLYVSESVDFAIHQTL 116 Query: 121 KLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVP 180 + + R + S + L + + ++ FRK + + +S Sbjct: 117 REVRLRYPQ-LTVVSLNTHRLFEQAELPFSLAALPDSFSVFRKQVESLEGRYSSQSARWN 175 Query: 181 AIRLTGPVTPSNIPRFFDYPF-------QAIDPMFPIGEQNALHILR-KFCKEKVYYYVE 232 + P + + P++ GE AL L F + Y + Sbjct: 176 SDITALPPSVLPSSSSWLSTAIRSINLELRSSPLWRGGESAALEHLEDYFSSDASLIYKQ 235 Query: 233 QRD-IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFY 291 R+ + + +++ SP+L+ G LS + RL + + + EL+WRE++ Sbjct: 236 TRNALDEWESSTKFSPWLANGCLSIGRLLARLNDY--ETQRGANESTYWIYFELLWREYF 293 Query: 292 RHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHN 351 + Y + I + + +++W G T +PI++AAM+QL G++ N Sbjct: 294 QWYALKYGAQLFQFSGIKGQVPLT-SYYPQRMRSWINGTTPYPIVNAAMKQLKATGYLSN 352 Query: 352 RLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNP 411 R R + AS LV +L +DWR G +YF SQL+D D+ASN G WQ+ A G D + R F+ Sbjct: 353 RSRQLVASCLVHELSIDWRYGAQYFQSQLIDYDVASNWGNWQYLAGVGADPRGHRR-FDL 411 Query: 412 TIQGKRFDPQGTFIRHWLPE 431 Q +DP+ +FIRHW E Sbjct: 412 AKQTALYDPELSFIRHWQGE 431 >gi|261400529|ref|ZP_05986654.1| deoxyribodopyrimidine photolyase [Neisseria lactamica ATCC 23970] gi|269209791|gb|EEZ76246.1| deoxyribodopyrimidine photolyase [Neisseria lactamica ATCC 23970] Length = 429 Score = 242 bits (618), Expect = 9e-62, Method: Composition-based stats. Identities = 114/470 (24%), Positives = 184/470 (39%), Gaps = 59/470 (12%) Query: 1 MKATTAMSVH-----LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISA 55 M + TA +V LVW R +LRI DN AL AA + +I ++I E + Sbjct: 1 MPSETAATVAHAMYTLVWFRQNLRIRDNAALCAAVAEG-SPIIGIWIDDAET-----GNP 54 Query: 56 RQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEIN 115 R++ F S ++ + L+ +GI S L ++ + + + + Sbjct: 55 RRTAFYRQSAAELAQVLAGRGIPLY------TAASPAGLVRLAVRLNIRTVIADASHTFA 108 Query: 116 EVRRDKLLEKRLQHRVICKSF-DDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADL 174 + D L L I +F +D + ++ + + +R+ + + Sbjct: 109 DKLADNALWHELDKHGIALTFVNDRSVFDNTDLIPDNGTAHTDFNRYREVWLDRFSKHP- 167 Query: 175 RSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMF---PIGEQNALHILRKFCKEKVYYYV 231 P + P P D +F GE A R+F ++ Y Sbjct: 168 ---PADSDLFAAYRQPFPENLPAPQPAAFSDGIFLPQNGGETAAWRQWRRFLEQA-DSYS 223 Query: 232 EQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFY 291 +D P+ + TS + YLS G +SPR E ++ W + +I R+F+ Sbjct: 224 VLKDFPSRKNTSLMGAYLSAGCISPRLLARESLERRLNA----------WADNIIRRDFF 273 Query: 292 RHLMAFYPSVCMGKPFIPWTEKIEWNKDSHL---LQAWKQGYTGFPIIDAAMRQLNTIGW 348 L + + + + L W+QG TG PIIDAAMR L+ G Sbjct: 274 LQLALQH------------ADDAPSDGNPEHTLRLTLWQQGRTGIPIIDAAMRCLHKTGS 321 Query: 349 MHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRI 408 +H L+ ++A F L + R GE +F QL D D A N G W+ AAS Sbjct: 322 LHPALKRLSADFFCHVLNLPRREGEIWFARQLTDFDAAINQGNWRLAASRHT-------C 374 Query: 409 FNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPL 458 + R DP GTFI+ +PEL ++ +H P + D + YP Sbjct: 375 PDIAAASYRTDPDGTFIKRHIPELAHLSADTVHTPWRFACSVD-THGYPA 423 >gi|28900058|ref|NP_799713.1| deoxyribodipyrimidine photolyase [Vibrio parahaemolyticus RIMD 2210633] gi|308094879|ref|ZP_05892988.2| cryptochrome dash [Vibrio parahaemolyticus AN-5034] gi|308095330|ref|ZP_05905084.2| cryptochrome dash [Vibrio parahaemolyticus Peru-466] gi|308125427|ref|ZP_05775230.2| cryptochrome dash [Vibrio parahaemolyticus K5030] gi|81839701|sp|Q87JP5|CRYD_VIBPA RecName: Full=Cryptochrome DASH gi|28808341|dbj|BAC61546.1| deoxyribodipyrimidine photolyase [Vibrio parahaemolyticus RIMD 2210633] gi|308086793|gb|EFO36488.1| cryptochrome dash [Vibrio parahaemolyticus Peru-466] gi|308091994|gb|EFO41689.1| cryptochrome dash [Vibrio parahaemolyticus AN-5034] gi|308115600|gb|EFO53140.1| cryptochrome dash [Vibrio parahaemolyticus K5030] Length = 445 Score = 242 bits (617), Expect = 1e-61, Method: Composition-based stats. Identities = 114/431 (26%), Positives = 179/431 (41%), Gaps = 23/431 (5%) Query: 6 AMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFI---ATP---EQWRQHGISARQSH 59 + L W DLR+ DN L A D +++ ++ TP ++ + + Sbjct: 2 KKKIGLYWFTFDLRLHDNSLLVDASSFLD-ELVCLYCRPSVTPFLHHFAQEVTLGRARQK 60 Query: 60 FIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRR 119 FI ASL ++ +L Q G + + L VT L+ + +E Sbjct: 61 FIDASLCELNDALGQLGQRLWTLDLPPY----QALKYAIQYLSVTHLYSDAMAGSDEQSI 116 Query: 120 DKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPV 179 L+ H VI + L + + + +T FRK + + + + Sbjct: 117 LHKLQDEYPHLVIVQ-HSVRSLFDESKLPFTLPDLPETFTQFRKCVEGIDIAHPIDAPSR 175 Query: 180 PAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNAL-HILRKFCKEKVYYYVEQRD-IP 237 G P+ +FD +F GE + L H R F Y E R+ + Sbjct: 176 LPPMPKGAQLPTLSSFYFDE-----SALFSGGEWSGLAHCRRYFFSGLASSYKETRNGLD 230 Query: 238 AIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAF 297 + +++ SP+L++G +SPR LK+ + + EL+WRE++ Sbjct: 231 GMAYSTKFSPWLALGCVSPRMIHAMLKQY--EQTQGANDSTYWIYFELLWREYFYWYARC 288 Query: 298 YPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMIT 357 Y I + + +H Q WK G T +PI++A M QLN G+M NR R + Sbjct: 289 YQQRLFRFGGIRNQPPLT-SFYAHRFQQWKNGTTPYPIVNACMHQLNHTGYMSNRGRQLV 347 Query: 358 ASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKR 417 AS LV +L +DWR G YF +QL+D D+ SN G WQ+ A G D R FN Q + Sbjct: 348 ASCLVHELGLDWRYGAAYFETQLIDYDVGSNWGNWQYLAGVGADPRG-SRQFNLEKQTQM 406 Query: 418 FDPQGTFIRHW 428 +DP FI W Sbjct: 407 YDPNHEFIERW 417 >gi|218768929|ref|YP_002343441.1| deoxyribodopyrimidine photolyase [Neisseria meningitidis Z2491] gi|121052937|emb|CAM09291.1| deoxyribodopyrimidine photolyase [Neisseria meningitidis Z2491] gi|319411227|emb|CBY91634.1| deoxyribodopyrimidine photo-lyase (DNA photolyase; photoreactivating enzyme) [Neisseria meningitidis WUE 2594] Length = 433 Score = 242 bits (617), Expect = 1e-61, Method: Composition-based stats. Identities = 114/465 (24%), Positives = 180/465 (38%), Gaps = 54/465 (11%) Query: 1 MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHF 60 + A T + LVW R +LRI DN AL AA VI ++I E R++ F Sbjct: 9 LYADTCAAHTLVWFRQNLRIRDNAALCAAVAEG-LPVIGIWIDDAETDN-----PRRAAF 62 Query: 61 IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120 S ++ + L+ +GI S L ++ + + + + + D Sbjct: 63 YRQSAAELAQGLAGRGIPLY------TAASPAELVRLAVRLNIRAVIADESHTFADKLAD 116 Query: 121 KLLEKRLQHRVICKSF-DDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPV 179 L L I +F +D + ++ + + +R+ + + P Sbjct: 117 NALWHELNKHGIALTFVNDRAVFGKTDLIPDGGTAHTDFDRYREVWLDRFSKQP----PA 172 Query: 180 PAIRLTGPVTPSNIPRFFDYPFQAIDPMFPI---GEQNALHILRKFCKEKVYYYVEQRDI 236 P P D +F GE A R+F ++ Y +D Sbjct: 173 GPDLFAAYRQPFPENLSAPPPAALSDGIFLPQNSGETAAWRQWRRFLEQA-DSYSVLKDF 231 Query: 237 PAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMA 296 P+ + TS + YLS G +SPR E ++ W + +I R+F+ L Sbjct: 232 PSRKHTSLMGAYLSAGCISPRLLARESLERRLNA----------WADNIIRRDFFLQLAL 281 Query: 297 FYPSVCMGKPFIPWTEKIEWNKDSHL---LQAWKQGYTGFPIIDAAMRQLNTIGWMHNRL 353 + T+ + + L W+QG TG PIIDAAMR L+ G +H L Sbjct: 282 QH------------TDDDPSDGNPEHTLRLTLWQQGRTGIPIIDAAMRCLHKTGSLHPAL 329 Query: 354 RMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTI 413 R ++A F L + R GE +F QL D D A N G W+ AAS + Sbjct: 330 RRLSADFFCHVLNLPRREGEIWFARQLTDFDAAINQGNWRLAASRHT-------CPDIAA 382 Query: 414 QGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPL 458 + DP GTF+R +PEL ++ +H P + D + YP Sbjct: 383 AAHKTDPDGTFVRRHIPELAHLSADTVHTPWRFACSVD-THGYPA 426 >gi|313669234|ref|YP_004049518.1| deoxyribodopyrimidine photolyase [Neisseria lactamica ST-640] gi|313006696|emb|CBN88164.1| deoxyribodopyrimidine photolyase [Neisseria lactamica 020-06] Length = 433 Score = 242 bits (617), Expect = 1e-61, Method: Composition-based stats. Identities = 114/465 (24%), Positives = 180/465 (38%), Gaps = 54/465 (11%) Query: 1 MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHF 60 + A T + LVW R +LRI DN AL AA +I ++I E + R++ F Sbjct: 9 LYADTRAAHTLVWFRQNLRIRDNAALCAAVAEG-LPIIGIWIDDAET-----GNPRRTAF 62 Query: 61 IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120 S ++ + L+ +GI S L ++ + + + + + D Sbjct: 63 YRQSAAELAQVLAGRGIPLY------TAASPAGLVRLAVRLNIRAVIADESHTFADKLAD 116 Query: 121 KLLEKRLQHRVICKSF-DDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPV 179 L L I +F +D + ++ Y + +R+ + + P Sbjct: 117 NALWHELDKHGIALTFVNDRAVFGKTDLIPDGGTAYADFDRYREVWLDRFSKQP----PA 172 Query: 180 PAIRLTGPVTPSNIPRFFDYPFQAIDPMF---PIGEQNALHILRKFCKEKVYYYVEQRDI 236 + P P D +F GE A R+F ++ Y +D Sbjct: 173 GSDLFAAYRQPFPENLSTPPPAAFSDGIFLPQNGGETAAWRQWRRFLEQA-DSYSVLKDF 231 Query: 237 PAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMA 296 P+ + TS + YLS G +SPR E ++ W + +I R+F+ L Sbjct: 232 PSRKNTSLMGAYLSAGCISPRLLARESLERRLNA----------WADNIIRRDFFLQLAL 281 Query: 297 FYPSVCMGKPFIPWTEKIEWNKDSHL---LQAWKQGYTGFPIIDAAMRQLNTIGWMHNRL 353 + + + + L W+QG TG PIIDAAMR L+ G +H L Sbjct: 282 QH------------ADDGPSDGNPEHTLRLTLWQQGRTGIPIIDAAMRCLHKTGSLHPAL 329 Query: 354 RMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTI 413 ++A F L + R GE +F QL D D A N G W+ AAS + Sbjct: 330 IRLSADFFCHVLNLPRREGEIWFARQLTDFDAAINQGNWRLAASRHTYP-------DIAA 382 Query: 414 QGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPL 458 + DP GTF+R +PEL ++P IH P D + YP Sbjct: 383 AAHKTDPDGTFVRRHIPELAHLPAAVIHTPWRAAGSID-THGYPA 426 >gi|309378182|emb|CBX23190.1| unnamed protein product [Neisseria lactamica Y92-1009] Length = 433 Score = 242 bits (617), Expect = 1e-61, Method: Composition-based stats. Identities = 111/465 (23%), Positives = 182/465 (39%), Gaps = 54/465 (11%) Query: 1 MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHF 60 + A T + LVW R +LRI DN AL AA + +I + I E + R++ F Sbjct: 9 LYADTRAAHTLVWFRQNLRIRDNAALCAAVAEG-SPIIGIRIDDAET-----GNPRRTAF 62 Query: 61 IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120 S ++ + L+ +GI S L ++ + + + + + D Sbjct: 63 YRQSAAELAQVLAGRGIPLY------TAASPAGLVRLAVRLNIRTVIADESHTFADKLAD 116 Query: 121 KLLEKRLQHRVICKSF-DDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPV 179 L L I +F +D + ++ + + +R+ + + P Sbjct: 117 NALWHELDKHGITLTFVNDRSVFDNTDLIPDNGTAHTDFNRYREVWLDRFSKHP----PA 172 Query: 180 PAIRLTGPVTPSNIPRFFDYPFQAIDPMF---PIGEQNALHILRKFCKEKVYYYVEQRDI 236 + + P P D +F GE A R+F ++ Y +D Sbjct: 173 DSDIFSTYRQPFPENLPAPPPAAFSDGIFLPQNGGETAAWRQWRRFIEQA-DSYSVLKDF 231 Query: 237 PAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMA 296 P+ + TS + YLS G +SPR E ++ W + +I R+F+ L Sbjct: 232 PSRKNTSLMGAYLSAGCISPRLLARESLERRLNA----------WTDNIIRRDFFLQLAL 281 Query: 297 FYPSVCMGKPFIPWTEKIEWNKDSHL---LQAWKQGYTGFPIIDAAMRQLNTIGWMHNRL 353 + + + + L W+QG TG PIIDA+MR L+ G +H L Sbjct: 282 QH------------ADDAPADGNPEHTLRLTLWQQGRTGIPIIDASMRCLHKTGSLHPAL 329 Query: 354 RMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTI 413 + ++A F L + R GE +F QL D D A N G W+ A+S + Sbjct: 330 KRLSADFFCHVLNLPRREGEIWFARQLTDFDAAINQGNWRLASSQHTYP-------DIAA 382 Query: 414 QGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPL 458 + DP GTF+R +PEL ++P IH P D + YP Sbjct: 383 AAHKTDPDGTFVRRHIPELAHLPAAVIHTPWRAAGSID-THGYPA 426 >gi|325145228|gb|EGC67508.1| putative deoxyribodipyrimidine photolyase [Neisseria meningitidis M01-240013] Length = 433 Score = 241 bits (616), Expect = 2e-61, Method: Composition-based stats. Identities = 113/465 (24%), Positives = 179/465 (38%), Gaps = 54/465 (11%) Query: 1 MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHF 60 + A T + LVW R +LRI DN AL AA VI ++I E R++ F Sbjct: 9 LYADTCAAHTLVWFRQNLRIRDNAALCAAVAEG-LPVIGIWIDDAETDN-----PRRAAF 62 Query: 61 IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120 S ++ + L+ +GI S L ++ + + + + + D Sbjct: 63 YRQSAAELAQGLAGRGIPLY------TAASPAELVRLAVRLNIRAVIADESHTFADKLAD 116 Query: 121 KLLEKRLQHRVICKSF-DDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPV 179 L L I +F +D + ++ + + +R+ + + P Sbjct: 117 NALWHELNKHGIALTFVNDRAVFGKTDLIPDGGTAHTDFDRYREVWLDRFSKQP----PA 172 Query: 180 PAIRLTGPVTPSNIPRFFDYPFQAIDPMFPI---GEQNALHILRKFCKEKVYYYVEQRDI 236 P P D +F GE A R+F ++ Y +D Sbjct: 173 GPDLFAAYRQPFPENLSAPPPAALSDGIFLPQNSGETAAWRQWRRFLEQA-DSYSVLKDF 231 Query: 237 PAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMA 296 P+ + TS + YLS G +SPR E ++ W + +I R+F+ L Sbjct: 232 PSRKHTSLMGAYLSAGCISPRLLARESLERRLNA----------WADNIIRRDFFLQLAL 281 Query: 297 FYPSVCMGKPFIPWTEKIEWNKDSHL---LQAWKQGYTGFPIIDAAMRQLNTIGWMHNRL 353 + + + + L W+QG TG PIIDAAMR L+ G +H L Sbjct: 282 QH------------ADDDPSDGNPEHTLRLTLWQQGRTGIPIIDAAMRCLHKTGSLHPAL 329 Query: 354 RMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTI 413 R ++A F L + R GE +F QL D D A N G W+ AAS + Sbjct: 330 RRLSADFFCHVLNLPRREGEIWFARQLTDFDAAINQGNWRLAASRHT-------CPDIAA 382 Query: 414 QGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPL 458 + DP GTF+R +PEL ++ +H P + D + YP Sbjct: 383 AAHKTDPDGTFVRRHIPELAHLSADTVHTPWRFACSVD-THGYPA 426 >gi|304389124|ref|ZP_07371166.1| deoxyribodopyrimidine photolyase [Neisseria meningitidis ATCC 13091] gi|304336923|gb|EFM03115.1| deoxyribodopyrimidine photolyase [Neisseria meningitidis ATCC 13091] Length = 433 Score = 241 bits (616), Expect = 2e-61, Method: Composition-based stats. Identities = 114/465 (24%), Positives = 180/465 (38%), Gaps = 54/465 (11%) Query: 1 MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHF 60 + A T + LVW R +LRI DN AL AA VI ++I E R++ F Sbjct: 9 LYADTCAAHTLVWFRQNLRIRDNAALCAAVAEG-FPVIGIWIDDAETDN-----PRRAAF 62 Query: 61 IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120 S ++ + L+ +GI S L ++ + + + + + D Sbjct: 63 YRQSAAELAQGLAGRGIPLY------TAASPAELVRLAVRLNIRAVIADESHTFADKLAD 116 Query: 121 KLLEKRLQHRVICKSF-DDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPV 179 L L I +F +D + ++ + + +R+ + + P Sbjct: 117 NALWHELDKHGIALTFVNDRAVFGKTDLIPDGGTAHTDFDRYREVWLDRFSKQP----PA 172 Query: 180 PAIRLTGPVTPSNIPRFFDYPFQAIDPMFPI---GEQNALHILRKFCKEKVYYYVEQRDI 236 P P D +F GE A R+F ++ Y +D Sbjct: 173 GPDLFAAYRQPFPENLSAPPPAALSDGIFLPQNSGETAAWRQWRRFLEQA-DSYSVLKDF 231 Query: 237 PAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMA 296 P+ + TS + YLS G +SPR E ++ W + +I R+F+ L Sbjct: 232 PSRKHTSLMGAYLSAGCISPRLLARESLERRLNA----------WADNIIRRDFFLQLAL 281 Query: 297 FYPSVCMGKPFIPWTEKIEWNKDSHL---LQAWKQGYTGFPIIDAAMRQLNTIGWMHNRL 353 + T+ + + L W+QG TG PIIDAAMR L+ G +H L Sbjct: 282 QH------------TDDDPSDGNPEHTLRLTLWQQGRTGIPIIDAAMRCLHKTGSLHPAL 329 Query: 354 RMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTI 413 R ++A F L + R GE +F QL D D A N G W+ AAS + Sbjct: 330 RRLSADFFCHVLNLPRREGEIWFARQLTDFDAAINQGNWRLAASRHT-------CPDIAA 382 Query: 414 QGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPL 458 + DP GTF+R +PEL ++ +H P + D + YP Sbjct: 383 AAHKTDPDGTFVRRHIPELAHLSADTVHTPWRFACSVD-THGYPA 426 >gi|86147737|ref|ZP_01066045.1| deoxyribodipyrimidine photolyase [Vibrio sp. MED222] gi|85834518|gb|EAQ52668.1| deoxyribodipyrimidine photolyase [Vibrio sp. MED222] Length = 466 Score = 241 bits (615), Expect = 2e-61, Method: Composition-based stats. Identities = 117/453 (25%), Positives = 189/453 (41%), Gaps = 35/453 (7%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFI------ATPEQWRQHGISARQSHF 60 + L NDLRI DN+ L+ A + K+I V + + + ++ A + F Sbjct: 2 KKIGLYLFTNDLRINDNQLLHYAVQSV-GKLICVIVEPTLVRFSADLAQEQSYGAHRQTF 60 Query: 61 IYASLLQVQKSLSQKGIVFQYHQCSNF--DDSIEWLDSYCLQQRVTKLFYNRQYEINEVR 118 + S+ ++ +L + G ++ D + + L Q VT F N +E + Sbjct: 61 VSQSITNLESNLVKFGQQLVVIHSNHLEPDAAEQTLSQIIATQHVTHFFANAHCGYDERQ 120 Query: 119 RDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQAD----- 173 L+ R + + C S L + ++ +T FRK + V + Sbjct: 121 LIHSLQSRHPNLITCLPHH-STLFDQHELSFELSKVPSSFTKFRKLVEHLDVNRNETVIS 179 Query: 174 -LRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILR-KFCKEKVYYYV 231 L A+ T T + A+ + GE L L F + + Y Sbjct: 180 ALPPAVRLALTSTSTSTSTISLFSSPNDESAVISDYWGGEDAGLAHLENYFSHDYAFNYK 239 Query: 232 EQRD-IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREF 290 + R+ I+ +++ SP+L++G +SP+ + LK+ D + EL+WRE+ Sbjct: 240 QTRNAFDGIENSTKFSPWLALGCVSPKTIYCHLKQFEAD--HGSNDSTYWIYFELLWREY 297 Query: 291 YRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHL-LQAWKQGYTGFPIIDAAMRQLNTIGWM 349 + S G+ + + +L L WK G T +PI+DA MRQLNT G+M Sbjct: 298 FYWKCLSLGSSLFGETSNHKLDSSNSSATLNLNLAKWKSGNTNYPIVDACMRQLNTTGYM 357 Query: 350 HNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAAS------------ 397 NR R + AS L+ +L +DWR G YF SQL+D D+ASN G W + A Sbjct: 358 SNRGRQLAASCLIYELGIDWRHGAAYFESQLIDYDVASNWGNWAYIAGALRPQVSTQTNK 417 Query: 398 --TGNDSVPYFRIFNPTIQGKRFDPQGTFIRHW 428 N + P R F+ Q +DP FI W Sbjct: 418 QKNANQAQPKSRHFDLGKQTDMYDPDHAFINKW 450 >gi|325202884|gb|ADY98338.1| putative deoxyribodipyrimidine photolyase [Neisseria meningitidis M01-240149] Length = 433 Score = 241 bits (615), Expect = 2e-61, Method: Composition-based stats. Identities = 115/465 (24%), Positives = 179/465 (38%), Gaps = 54/465 (11%) Query: 1 MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHF 60 + A T + LVW R +LRI DN AL AA VI ++I E R++ F Sbjct: 9 LYADTRAAHTLVWFRQNLRIRDNAALCAAVAEG-LPVIGIWIDDAETDN-----PRRAAF 62 Query: 61 IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120 S ++ + L+ +GI S L ++ + + + + + D Sbjct: 63 YRQSAAELAQGLAGRGIPLY------TAASPAELVRLAVRLNIRAVIADESHTFADKLAD 116 Query: 121 KLLEKRLQHRVICKSF-DDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPV 179 L L I +F +D + ++ + + +R+ + + P Sbjct: 117 NALWHELDKHGIALTFVNDRAVFGKTDLIPDGGTAHTDFDRYREVWLDRFSKQP----PA 172 Query: 180 PAIRLTGPVTPSNIPRFFDYPFQAIDPMFPI---GEQNALHILRKFCKEKVYYYVEQRDI 236 P P D +F GE A R+F ++ Y +D Sbjct: 173 GPNLFAAYRQPFPENLSAPPPAALSDGIFLPQNSGETAAWRQWRRFLEQA-DSYSVLKDF 231 Query: 237 PAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMA 296 P+ + TS + YLS G +SPR E ++ W + +I R+F+ L Sbjct: 232 PSRKHTSLMGAYLSAGCISPRLLARESLERRLNA----------WADNIIRRDFFLQLAL 281 Query: 297 FYPSVCMGKPFIPWTEKIEWNKDSHL---LQAWKQGYTGFPIIDAAMRQLNTIGWMHNRL 353 + T+ + + L W+QG TG PIIDAAMR L+ G +H L Sbjct: 282 QH------------TDDSPSDGNPEHTLRLTLWQQGQTGIPIIDAAMRCLHKTGSLHPAL 329 Query: 354 RMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTI 413 R ++A F L + R GE +F QL D D A N G W AAS + Sbjct: 330 RRLSADFFCHVLNLPRREGEIWFARQLTDFDAAINQGNWWLAASRHT-------CPDIAA 382 Query: 414 QGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPL 458 R DP GTFI+ +PEL ++ +H P + D + YP Sbjct: 383 ASYRTDPDGTFIKRHIPELAHLSADTVHTPWRFACSVD-THGYPA 426 >gi|261378496|ref|ZP_05983069.1| deoxyribodopyrimidine photolyase [Neisseria cinerea ATCC 14685] gi|269145039|gb|EEZ71457.1| deoxyribodopyrimidine photolyase [Neisseria cinerea ATCC 14685] Length = 430 Score = 241 bits (614), Expect = 2e-61, Method: Composition-based stats. Identities = 121/467 (25%), Positives = 179/467 (38%), Gaps = 53/467 (11%) Query: 1 MKATTAMSVH-----LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISA 55 M + A +V LVW R +LRI DN AL AA + +I ++I E H Sbjct: 1 MPSEHAATVAHAMYTLVWFRQNLRIRDNAALCAAVAEG-SPIIGIWIEDTETGNLH---- 55 Query: 56 RQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEIN 115 ++ F S ++ + L+ GI S+ L + V + + Sbjct: 56 -RTAFYRQSAAELAQVLAGHGIPLYTAASSS------GLIRLAVGSSVRTVIADASCTFA 108 Query: 116 EVRRDKLLEKRLQHRVICKSF-DDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADL 174 E D L L I +F +D + + + + +RKA + + Sbjct: 109 EKLTDNALWHELDKHSIRLTFVNDRSVFDQTDLPPDNGTAHTDFNRYRKAWLDRFSKHP- 167 Query: 175 RSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFP---IGEQNALHILRKFCKEKVYYYV 231 P + P P D +FP G A + F K+ +Y Sbjct: 168 ---PADSDIFATYRQPFPENLSAPQPAALSDGIFPIRHGGSSAAWKQWQTFLKQA-DFYD 223 Query: 232 EQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFY 291 +D P+ + TS +S YL+ G LSPR +D SW + LI R+F+ Sbjct: 224 VLKDFPSRKHTSLMSAYLNAGCLSPRLLAREGIGYRLD----------SWTDNLIRRDFF 273 Query: 292 RHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHN 351 L + +++ L W+QG TG PIIDA+MR L G +H Sbjct: 274 LQLALQHADDASSDVN---------PENTRYLALWQQGQTGIPIIDASMRCLYKTGGLHP 324 Query: 352 RLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNP 411 LR + A FL L V GE +F QL D D A N G W+ A+S + Sbjct: 325 VLRRLCADFLCHTLRVPRHEGEAWFARQLTDFDAAINQGNWRLASSQHTYP-------DI 377 Query: 412 TIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPL 458 + DP GTF+R +PEL ++P IH P D + YP Sbjct: 378 AAAAHKTDPDGTFVRRHIPELAHLPAAVIHTPWRAAGSID-THGYPA 423 >gi|316985228|gb|EFV64180.1| FAD binding domain of DNA photolyase family protein [Neisseria meningitidis H44/76] gi|325141125|gb|EGC63628.1| putative deoxyribodipyrimidine photolyase [Neisseria meningitidis CU385] gi|325199492|gb|ADY94947.1| putative deoxyribodipyrimidine photolyase [Neisseria meningitidis H44/76] Length = 433 Score = 240 bits (613), Expect = 4e-61, Method: Composition-based stats. Identities = 114/465 (24%), Positives = 180/465 (38%), Gaps = 54/465 (11%) Query: 1 MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHF 60 + A T + LVW R +LRI DN AL AA +I ++I E R++ F Sbjct: 9 LYADTCAAHTLVWFRQNLRIRDNAALCAAVAEG-LPIIGIWIDDAETDN-----PRRAAF 62 Query: 61 IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120 S ++ + L+ +GI S L ++ + + + + + D Sbjct: 63 YRQSAAELAQGLAGRGIPLY------TAASPAELVRLAVRLNIRTVIADESHTFADKLAD 116 Query: 121 KLLEKRLQHRVICKSF-DDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPV 179 L L I +F +D + ++ Y + +R+ + + P Sbjct: 117 NALWHELDKHGIALTFVNDRAVFGKTDLIPDGGTAYADFDRYREVWLDRFSKQP----PA 172 Query: 180 PAIRLTGPVTPSNIPRFFDYPFQAIDPMFPI---GEQNALHILRKFCKEKVYYYVEQRDI 236 P P D +F GE A R+F ++ Y +D Sbjct: 173 GPDLFAAYRQPFPENLSAPQPAALSDGIFLPQNSGETAAWRQWRRFLEQA-DSYSVLKDF 231 Query: 237 PAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMA 296 P+ + TS + YLS G +SPR E ++ W + +I R+F+ L Sbjct: 232 PSRKHTSLMGAYLSAGCISPRLLARESLERRLNA----------WADNIIRRDFFLQLAL 281 Query: 297 FYPSVCMGKPFIPWTEKIEWNKDSHL---LQAWKQGYTGFPIIDAAMRQLNTIGWMHNRL 353 + T+ + + L W+QG TG PIIDAAMR L+ G +H L Sbjct: 282 QH------------TDDDPSDGNPEHTLRLTLWQQGRTGIPIIDAAMRCLHKTGSLHPAL 329 Query: 354 RMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTI 413 R ++A F L + R GE +F QL D D A N G W+ AAS + Sbjct: 330 RRLSADFFCHVLNLPRREGEIWFARQLTDFDAAINQGNWRLAASRHT-------CPDIAA 382 Query: 414 QGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPL 458 + DP GTF+R +PEL ++ +H P + D + YP Sbjct: 383 AAHKTDPDGTFVRRHIPELAHLSADTVHTPWRFACSVD-THGYPA 426 >gi|302422386|ref|XP_003009023.1| cryptochrome DASH [Verticillium albo-atrum VaMs.102] gi|261352169|gb|EEY14597.1| cryptochrome DASH [Verticillium albo-atrum VaMs.102] Length = 703 Score = 240 bits (612), Expect = 4e-61, Method: Composition-based stats. Identities = 114/512 (22%), Positives = 202/512 (39%), Gaps = 80/512 (15%) Query: 1 MKATTAMSVHLVWLRNDLRITDNKALYAACHNSD---AKVIAVFIATPEQWRQHGI---- 53 M ++T ++ + LR+DLR++DN L+ + D ++ V++ Q G Sbjct: 1 MPSST--NILIYLLRHDLRVSDNPILHHLATSKDHGFTHLLPVYVFPAHQIETSGFIRDG 58 Query: 54 ------------------SARQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLD 95 ++ FI S+ +Q+S G D L Sbjct: 59 SKSPYPEARSQVGSFWRCGPHRAKFIAQSVWNLQESFQGLGSGLCLRAGRFDDVLNGLLK 118 Query: 96 SYC-LQQRVTKLFYNRQYEINEVRRDKLLEKRL-QHRVICKSFDDSVLL--PPGSILNHA 151 QQ + ++ + + E R +K + ++ + K + D + L +A Sbjct: 119 GLTEKQQTIGAVWMTLEDAVEEKRDEKAVSSICSENNIEFKLWQDEKYFVDDRDTELENA 178 Query: 152 LQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQ--------- 202 + ++T +RK + L + +LP P+ P ++ + PF+ Sbjct: 179 HDLPDIFTTYRKT-QEPLRERPRPTLPKPSNNSLPPYPSDDVVPVQERPFEMPVTYEELE 237 Query: 203 -----------AIDPMFP----------IGEQNALHILRKFCKEK-VYYYVEQRD-IPAI 239 P +P GE +AL + K + Y R+ + + Sbjct: 238 AALLKPVEDVLDDAPEYPSNATSVHPLKGGELDALQRVNHLIKSCSMSNYKNTRNGLLGV 297 Query: 240 QGTSQLSPYLSIGVLSPRQCWNRL----------KEEFVDLLIKPKSGAFSWLNELIWRE 289 +++LS YL++G L+ RQ + +E G + EL+WR+ Sbjct: 298 DFSTKLSGYLALGCLTARQVHEEMVKYEDGQGPQYKEIDGFGNGENEGTKAVRFELLWRD 357 Query: 290 FYRHLMAFYPS-VCMGKPFIPWTEKIEWNKD-----SHLLQAWKQGYTGFPIIDAAMRQL 343 + R + + + F + +W + +L+ + G TG IDA+ R+L Sbjct: 358 YMRLCTRKFGHRLFRAEGFRDDRKPTQWKTAKQPEIAEILKRFLAGTTGMGFIDASQREL 417 Query: 344 NTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSV 403 G+ NR R ASFL K L +DWR G E++ L+D D++SN WQ+ A GND Sbjct: 418 LHTGYTSNRARQNVASFLAKHLGIDWRYGAEWYECMLIDYDVSSNWSNWQYVAGVGNDPR 477 Query: 404 PYFRIFNPTIQGKRFDPQGTFIRHWLPELNNV 435 RIFNP Q +D QG +++ W+PE + Sbjct: 478 GEARIFNPVKQAFDYDKQGEYVKAWVPETRQL 509 >gi|254671546|emb|CBA09171.1| Deoxyribodipyrimidine photolyase [Neisseria meningitidis alpha153] Length = 433 Score = 240 bits (612), Expect = 5e-61, Method: Composition-based stats. Identities = 115/465 (24%), Positives = 179/465 (38%), Gaps = 54/465 (11%) Query: 1 MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHF 60 + A T + LVW R +LRI DN AL AA VI ++I E R++ F Sbjct: 9 LYADTRAAHTLVWFRQNLRIRDNAALCAAVAEG-LPVIGIWIDDAETDN-----PRRAAF 62 Query: 61 IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120 S ++ + L+ +GI S L ++ + + + + + D Sbjct: 63 YRQSAAELAQGLAGRGIPLY------TAASPAELVRLAVRLNIRAVIADESHTFADKLAD 116 Query: 121 KLLEKRLQHRVICKSF-DDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPV 179 L L I +F +D + ++ + + +R+ + + P Sbjct: 117 NALWHELDKHGIALTFVNDRAVFGKTDLIPDGGTAHTDFDRYREVWLDRFSKQP----PA 172 Query: 180 PAIRLTGPVTPSNIPRFFDYPFQAIDPMFPI---GEQNALHILRKFCKEKVYYYVEQRDI 236 P P D +F GE A R+F ++ Y +D Sbjct: 173 GPDLFAAYRQPFPENLSAPPPAALSDGIFLPQNSGETAAWRQWRRFLEQA-DSYSVLKDF 231 Query: 237 PAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMA 296 P+ + TS + YLS G +SPR E ++ W + +I R+F+ L Sbjct: 232 PSRKHTSLMGAYLSAGCISPRLLARESLERRLNA----------WADNIIRRDFFLQLAL 281 Query: 297 FYPSVCMGKPFIPWTEKIEWNKDSHL---LQAWKQGYTGFPIIDAAMRQLNTIGWMHNRL 353 + T+ + + L W+QG TG PIIDAAMR L+ G +H L Sbjct: 282 QH------------TDDDPSDGNPEHTLRLTLWQQGRTGIPIIDAAMRCLHKTGSLHPAL 329 Query: 354 RMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTI 413 R ++A F L + R GE +F QL D D A N G W AAS + Sbjct: 330 RRLSADFFCHVLNLPRREGEIWFARQLTDFDAAINQGNWWLAASRHT-------CPDIAA 382 Query: 414 QGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPL 458 R DP GTFI+ +PEL ++ +H P + D + YP Sbjct: 383 ASYRTDPDGTFIKRHIPELAHLSADTVHTPWRFACSVD-THGYPA 426 >gi|325131015|gb|EGC53742.1| putative deoxyribodipyrimidine photolyase [Neisseria meningitidis OX99.30304] Length = 433 Score = 240 bits (612), Expect = 5e-61, Method: Composition-based stats. Identities = 114/465 (24%), Positives = 179/465 (38%), Gaps = 54/465 (11%) Query: 1 MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHF 60 + A T + LVW R +LRI DN AL AA VI ++I E R++ F Sbjct: 9 LYADTRAAHTLVWFRQNLRIRDNAALCAAVAEG-LPVIGIWIDDAETDN-----PRRAAF 62 Query: 61 IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120 S ++ + L+ +GI S L ++ + + + + + D Sbjct: 63 YRQSAAELAQGLAGRGIPLY------TAASPAELVRLAVRLNIRAVIADESHTFADKLAD 116 Query: 121 KLLEKRLQHRVICKSF-DDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPV 179 L L I +F +D + ++ + + +R+ + + P Sbjct: 117 NALWHELDKHGIALTFVNDRAVFGKTDLIPDGGTAHTDFDRYREVWLDRFSKQP----PA 172 Query: 180 PAIRLTGPVTPSNIPRFFDYPFQAIDPMFPI---GEQNALHILRKFCKEKVYYYVEQRDI 236 P P D +F GE A R+F ++ Y +D Sbjct: 173 GPDLFVAYRQPFPENLSAPPPAALSDGIFLPQNSGETAAWRQWRRFLEQA-DSYSVLKDF 231 Query: 237 PAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMA 296 P+ + TS + YLS G +SPR E ++ W + +I R+F+ L Sbjct: 232 PSRKHTSLMGAYLSAGCISPRLLARESLERRLNA----------WADNIIRRDFFLQLAL 281 Query: 297 FYPSVCMGKPFIPWTEKIEWNKDSHL---LQAWKQGYTGFPIIDAAMRQLNTIGWMHNRL 353 + T+ + + L W+QG TG PIIDAAMR L+ G +H L Sbjct: 282 QH------------TDDDPSDGNPEHTLRLTLWQQGRTGIPIIDAAMRCLHKTGSLHPAL 329 Query: 354 RMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTI 413 R ++A F L + R GE +F QL D D A N G W AAS + Sbjct: 330 RRLSADFFCHVLNLPRREGEIWFARQLTDFDAAINQGNWWLAASRHT-------CPDIAA 382 Query: 414 QGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPL 458 + DP GTF+R +PEL ++ +H P + D + YP Sbjct: 383 AAHKTDPDGTFVRRHIPELAHLSADTVHTPWRFACSVD-THGYPA 426 >gi|121635578|ref|YP_975823.1| deoxyribodopyrimidine photolyase [Neisseria meningitidis FAM18] gi|161870775|ref|YP_001599948.1| deoxyribodopyrimidine photolyase [Neisseria meningitidis 053442] gi|120867284|emb|CAM11055.1| deoxyribodopyrimidine photolyase [Neisseria meningitidis FAM18] gi|161596328|gb|ABX73988.1| deoxyribodopyrimidine photolyase [Neisseria meningitidis 053442] gi|325128961|gb|EGC51813.1| putative deoxyribodipyrimidine photolyase [Neisseria meningitidis N1568] gi|325199013|gb|ADY94469.1| putative deoxyribodipyrimidine photolyase [Neisseria meningitidis G2136] Length = 433 Score = 239 bits (611), Expect = 5e-61, Method: Composition-based stats. Identities = 115/465 (24%), Positives = 179/465 (38%), Gaps = 54/465 (11%) Query: 1 MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHF 60 + A T + LVW R +LRI DN AL AA VI ++I E R++ F Sbjct: 9 LYADTCAAHTLVWFRQNLRIRDNAALCAAVAEG-LPVIGIWIDDAETDN-----PRRAAF 62 Query: 61 IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120 S ++ + L+ +GI S L ++ + + + + + D Sbjct: 63 YRQSAAELAQGLAGRGIPLY------TAASPAELVRLAVRLNIRAVIADESHTFADKLAD 116 Query: 121 KLLEKRLQHRVICKSF-DDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPV 179 L L I +F +D + ++ + + +R+ + + P Sbjct: 117 NALWHELDKHGIALTFVNDRAVFGKTDLIPDGGTAHTDFDRYREVWLDRFSKQP----PA 172 Query: 180 PAIRLTGPVTPSNIPRFFDYPFQAIDPMFPI---GEQNALHILRKFCKEKVYYYVEQRDI 236 P P D +F GE A R+F ++ Y +D Sbjct: 173 GPDLFAAYRQPFPENLSAPPPAALSDGIFLPQNSGETAAWRQWRRFLEQA-DSYSVLKDF 231 Query: 237 PAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMA 296 P+ + TS + YLS G +SPR E ++ W + +I R+F+ L Sbjct: 232 PSRKHTSLMGAYLSAGCISPRLLARESLERRLNA----------WADNIIRRDFFLQLAL 281 Query: 297 FYPSVCMGKPFIPWTEKIEWNKDSHL---LQAWKQGYTGFPIIDAAMRQLNTIGWMHNRL 353 + T+ + + L W+QG TG PIIDAAMR L+ G +H L Sbjct: 282 QH------------TDDDPSDGNPEHTLRLTLWQQGQTGIPIIDAAMRCLHKTGSLHPAL 329 Query: 354 RMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTI 413 R ++A F L + R GE +F QL D D A N G W AAS + Sbjct: 330 RRLSADFFCHVLNLPRREGEIWFARQLTDFDAAINQGNWWLAASRHT-------CPDIAA 382 Query: 414 QGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPL 458 R DP GTFI+ +PEL ++ +H P + D + YP Sbjct: 383 ASYRTDPDGTFIKRHIPELAHLSADTVHTPWRFACSVD-THGYPA 426 >gi|328725336|ref|XP_003248433.1| PREDICTED: deoxyribodipyrimidine photo-lyase-like [Acyrthosiphon pisum] Length = 187 Score = 239 bits (611), Expect = 5e-61, Method: Composition-based stats. Identities = 118/187 (63%), Positives = 144/187 (77%) Query: 295 MAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLR 354 M +P++C +PF+ WT ++W ++ L+AW+QG TG+PI+DAAMRQLNT+GWMHNRLR Sbjct: 1 MVAFPALCKHQPFVDWTRNVDWQQNEAHLKAWQQGKTGYPIVDAAMRQLNTLGWMHNRLR 60 Query: 355 MITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQ 414 MITASFLVKDLL+DWR GE YFM QL+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT Q Sbjct: 61 MITASFLVKDLLIDWREGERYFMQQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQ 120 Query: 415 GKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQY 474 G+RFD QG FIR WLPEL VP IH P W KN+ L+YP PIV+HK A TL+ + Sbjct: 121 GERFDKQGAFIREWLPELKEVPDSDIHQPQVWAQKNNKKLDYPAPIVEHKDARKKTLDAF 180 Query: 475 YAAKKQS 481 A+ + Sbjct: 181 ERARSAA 187 >gi|310791128|gb|EFQ26657.1| DASH family cryptochrome [Glomerella graminicola M1.001] Length = 705 Score = 239 bits (611), Expect = 6e-61, Method: Composition-based stats. Identities = 126/545 (23%), Positives = 203/545 (37%), Gaps = 95/545 (17%) Query: 5 TAMSVHLVWLRNDLRITDNKALYA---ACHNSDAKVIAVFIATPEQWRQHGI-------- 53 TA ++ + R+DLRI DN ++ A + V+ +++ Q G Sbjct: 2 TATNILIYLFRHDLRIADNPIIHHLSTASDHGFTHVLPIYVFPAHQIEISGFLREGSKSP 61 Query: 54 --------------SARQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSY-C 98 ++ F+ S+ +++SL D + L S+ Sbjct: 62 YPEARSQIGKFWRCGPHRTKFVAQSVWNLKESLESVHSGLALRAGKFGDVVDDLLRSFAD 121 Query: 99 LQQRVTKLFYNRQYEINEVRRDKLLEKRL-QHRVICKSFDDSVLLPPGSILNHAL--QMY 155 +Q+V ++ + + E R +K + +H V K++ D L+ ++ Sbjct: 122 KKQKVGAVWMTAEESVEEKRDEKAVSAACEKHGVAFKTWTDEKYFIDDRDLHFESPSELA 181 Query: 156 KVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQ------------- 202 V+T FRK + L + +LP P P +I PFQ Sbjct: 182 DVFTAFRKT-QEPLREKPRPTLPHPKKGSLPPYPDQSIIPPQRTPFQIPSTYDALEAALL 240 Query: 203 -------AIDPMFP----------IGEQNALHILRKFCK-EKVYYYVEQRD-IPAIQGTS 243 +P FP GE A+ L K V Y + R+ + + ++ Sbjct: 241 KPLKSPFNEEPKFPENAKSVHPFKGGEDFAIERLEHLVKTGSVSSYKDTRNEMLGVDFST 300 Query: 244 QLSPYLSIGVLSPRQCWNRLKE----------EFVDLLIKPKSGAFSWLNELIWREFYRH 293 +LS YL++G L+ RQ L + E G + EL+WR++ R Sbjct: 301 KLSAYLALGCLTSRQIHEALVKYEDGQDDRFKETPGYGKGENDGTKAVRFELLWRDYMRL 360 Query: 294 LMAFYPSVCMGKPFIPWTEKIEWNK-DSHL-----------------LQAWKQGYTGFPI 335 + + +W D LQ + G TG + Sbjct: 361 CTMKFGAKLFCVTGFKNDTTPKWKSADPEHVVSEDNLGTPVDDVQKILQRFLNGTTGMGL 420 Query: 336 IDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWA 395 IDA+ R+L G+ NR R ASFL K L +DWR G E++ L+D D+ SN WQ+ Sbjct: 421 IDASQRELYHTGYTSNRARQNVASFLTKHLGIDWRYGAEWYEYLLVDYDVNSNWSNWQYV 480 Query: 396 ASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPT-----QYIHAPHSWLDKN 450 A GND RIFNP Q +D G +++ W+ E V Q P L++ Sbjct: 481 AGVGNDPRGDNRIFNPVKQAFDYDKTGEYVKAWVVETREVENLENVFQLWTTPQEELERL 540 Query: 451 DLSLN 455 LS N Sbjct: 541 GLSKN 545 >gi|167563424|ref|ZP_02356340.1| deoxyribodipyrimidine photolyase [Burkholderia oklahomensis EO147] Length = 254 Score = 239 bits (610), Expect = 7e-61, Method: Composition-based stats. Identities = 103/256 (40%), Positives = 139/256 (54%), Gaps = 9/256 (3%) Query: 230 YVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWRE 289 Y RD P TS+LSP++ G LS RQ W+ + ++ ++ EL WRE Sbjct: 1 YATGRDRPGAASTSRLSPFVRFGNLSVRQVWHAAVDAHAH-GAATQADLDTFCRELGWRE 59 Query: 290 FYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWM 349 F + +P + + + + W D L AW++G TG+P++DA MR+L GWM Sbjct: 60 FCYGQLYRFPDLAR-RNLRHNLDGMPWRDDPAALAAWRRGATGYPLVDAGMRELWATGWM 118 Query: 350 HNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIF 409 HNR RM+ ASFLVK LL+DWR G+ +F L+D D ASN WQW A G D+ PYFRIF Sbjct: 119 HNRARMVCASFLVKHLLIDWREGDAWFWDTLVDADAASNAANWQWVAGCGADAAPYFRIF 178 Query: 410 NPTIQGKRFDPQGTFIRHWLPELNNVP-TQYIHAPHSWLDKN------DLSLNYPLPIVD 462 NP QGK+FDP G ++R W+PEL +P IH P + L YPLPIV Sbjct: 179 NPIAQGKKFDPDGAYVRRWVPELAGLPANAAIHEPWAAPAARLAAAGVRLGDTYPLPIVA 238 Query: 463 HKKACHHTLNQYYAAK 478 H A L+ + + Sbjct: 239 HDAARKRALDAWVTVR 254 >gi|331006214|ref|ZP_08329536.1| Deoxyribodipyrimidine photolyase [gamma proteobacterium IMCC1989] gi|330419971|gb|EGG94315.1| Deoxyribodipyrimidine photolyase [gamma proteobacterium IMCC1989] Length = 477 Score = 239 bits (610), Expect = 7e-61, Method: Composition-based stats. Identities = 102/460 (22%), Positives = 179/460 (38%), Gaps = 43/460 (9%) Query: 3 ATTAMSVHLVWLRNDLRITDNKALYAA--CHNSDAKVIAVFIATPEQWRQHGIS-----A 55 A T L+W +DLRI DN L+ A +N+ +++ ++ E + Q Sbjct: 4 APTPEPTTLLWFTHDLRIHDNALLFYANKINNNKHRLLCLYCIDEEWFEQDRFGLQRIAT 63 Query: 56 RQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEIN 115 + +F+ SL + L G + + E + + + + + N Sbjct: 64 HRWNFLVGSLHALNTELQALGQQLVIAKG----NPTEIISDLLSRYSINTVISSNTVGYN 119 Query: 116 EVRRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQ-NLVQADL 174 E + + + H + + L + + ++ FR+ + L Sbjct: 120 EQAYWQEISNKYPHLAFIQQ-ETFTLFAESQLPFLLNNLPDNFSKFRRLIESTKNHPHYL 178 Query: 175 RSLPVPAIRLTGPVTPSNIPRF-----FDYPFQAIDP---------------MFPIGEQN 214 ++ I + P F +P + P F GE + Sbjct: 179 DAIKSSLIGQPTKLPPKLHITLQEEHQFSWPRTSTIPNGKNNHDINANKNSLGFYGGEAS 238 Query: 215 ALHIL-RKFCKEKVYYYVEQRDIPAIQG-----TSQLSPYLSIGVLSPRQCWNRLKEEFV 268 + L + F +Y + R+ + +S+ SP+L+ G LS R L Sbjct: 239 GISHLKQYFSTNAPSHYKDTRNALGCEKEEWQLSSKFSPWLANGSLSARYIVQMLSRYEE 298 Query: 269 DLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQ 328 + + + EL+WRE+++ Y + I + + Q W Sbjct: 299 E--NGANDSTYWIMFELLWREYFQWYARKYGKKLFHRAGIQQRAPLA-SFYPQRFQQWCN 355 Query: 329 GYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASN 388 G T +P+++A M+QLN G++ NR R I AS L+ +L +DWR G YF QL+D D+A+N Sbjct: 356 GSTPWPLVNACMKQLNQTGFLSNRGRQIVASVLIHELGLDWRCGAAYFEQQLIDYDVAAN 415 Query: 389 NGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHW 428 G WQ+ A G D R FN Q + +DP T+I+ W Sbjct: 416 WGNWQYIAGVGADPRG-GRQFNIDKQQQLYDPDETYIKRW 454 >gi|289551448|ref|YP_003472352.1| Deoxyribodipyrimidine photolyase [Staphylococcus lugdunensis HKU09-01] gi|289180979|gb|ADC88224.1| Deoxyribodipyrimidine photolyase [Staphylococcus lugdunensis HKU09-01] Length = 424 Score = 239 bits (610), Expect = 8e-61, Method: Composition-based stats. Identities = 125/427 (29%), Positives = 199/427 (46%), Gaps = 25/427 (5%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M++ LV L R+ N + +++ A + + P + + + + F + ++ Sbjct: 1 MNIALV-LNRVFRLEQNPM-FEYLNHNQADIERCYCVIPLELFE-DEAPLKRTFYHQAVT 57 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKL--LE 124 Q + L + GI F S+C Q+ + + + + ++ Sbjct: 58 QFIQQLIEIGI-------KPFVFPYTAFASFCEQKEIDTVVFPSDIMSFHNCECDILHVK 110 Query: 125 KRLQHRVIC-KSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIR 183 +Q + I + + P LN Q YKV+T F KA L Q + ++ Sbjct: 111 SEIQAQKIAIVNVRANHYFQPSRTLNQQGQPYKVFTSFYKANRPQLRQRRRYPYQLDKLK 170 Query: 184 LTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS 243 I + + + IGE + + F + +Y R+ TS Sbjct: 171 -------QQIINADNTSVKKVTEHINIGEAKSQQQWQAFLNNNIEHYQYYREYLPETLTS 223 Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCM 303 QLS L+ G L + +L E + D + +++ EL++REFY LM +YP Sbjct: 224 QLSIALAYGFLDINEIMRQLLERYHD----NEENYEAFIRELLFREFYYVLMVYYPETA- 278 Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363 F + I W+++ AWK+G TG+PIIDAAM +L G+MHNR+RM+TA FL K Sbjct: 279 HTSFNDKYKHITWSENQSDFNAWKEGRTGYPIIDAAMHELKQTGFMHNRMRMVTAQFLTK 338 Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423 +L +DW GE YF + L+D D ASN GWQW+ASTG D+VPYFR+FNP Q +RFD + Sbjct: 339 ELFIDWTWGENYFKNLLIDYDAASNVHGWQWSASTGTDAVPYFRMFNPIRQSERFDKKVY 398 Query: 424 FIRHWLP 430 ++H P Sbjct: 399 TLKHTCP 405 >gi|302417194|ref|XP_003006428.1| cryptochrome-1 [Verticillium albo-atrum VaMs.102] gi|261354030|gb|EEY16458.1| cryptochrome-1 [Verticillium albo-atrum VaMs.102] Length = 626 Score = 239 bits (609), Expect = 9e-61, Method: Composition-based stats. Identities = 109/538 (20%), Positives = 176/538 (32%), Gaps = 82/538 (15%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 + W R DLR+ D+ AL AA A + VF P + + ++ + Sbjct: 7 IYWFRTDLRLHDSPALTAALELEPAVLWPVFTWDPHYVYRARGGLNRWQYLLDCQNDLSA 66 Query: 71 SLSQKG--IVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128 S+++ + + +VT L + + + RD ++ + Sbjct: 67 SITKLNPKSKLFVLR----EGPQTLFPKLFKAWKVTHLVFEKDTDSYGRERDGVVVAAAR 122 Query: 129 HRVICKSF-DDSVLLPPGSILNHALQ-------------------------MYKVYTPFR 162 + L I+ K+ P Sbjct: 123 EAGVEVIMRSGRTLWDSDDIVRANGGKPTMSMSQLQKAGSRVGDIPRPVAAPTKLPDPGE 182 Query: 163 KALIQNLVQADLRSLPVPAIR-----------LTGPVTPSNIPRFFDYPFQAIDPMFPIG 211 + + D A R + GP I + F + G Sbjct: 183 MPVDFEQERPDTTPDFNAAQRTVEAGDQGYASIAGPNGDFGIETMEELGFPSATTPHRGG 242 Query: 212 EQNALHILRKFCKEKVY--YYVEQRDIPAI---QGTSQLSPYLSIGVLSPRQCWNRLKEE 266 E AL L++ K+ Y + + + PA Q T+ LSP++ G LS R+ + + + Sbjct: 243 ESRALETLKEVMKDVKYAATFRKPQTSPAAFEPQSTTLLSPHMHFGSLSVREFYWQAVDA 302 Query: 267 FVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEW---------- 316 S +L++R+ Y A + I W Sbjct: 303 VKAFGKGASGPPESLTGQLLFRDMYFAAQAALGYKFEQTRGNAYCRFIPWHLPSKVNTET 362 Query: 317 -----------NKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK-D 364 + + WK G TGFP IDA MRQL GW+H+ R A FL + Sbjct: 363 GLITGQYHVDSEEADLWFRRWKAGQTGFPWIDALMRQLAEEGWIHHLGRHSVACFLTRGG 422 Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424 +DW G E F L+D + A N G WQW S YFR ++P G+++D +G Sbjct: 423 CYIDWERGCEVFEEWLIDHEPACNAGNWQW-LSCAAFFSQYFRCYSPVSFGQKWDKEGLL 481 Query: 425 IRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQSL 482 I + A + LD + YP P+ D + L A +L Sbjct: 482 ILR----------KRGQAWCNGLDDREEGT-YPKPMFDFNERRTACLAAMKKAYGVAL 528 >gi|261391823|emb|CAX49280.1| deoxyribodopyrimidine photo-lyase (DNA photolyase; photoreactivating enzyme) [Neisseria meningitidis 8013] Length = 433 Score = 239 bits (609), Expect = 1e-60, Method: Composition-based stats. Identities = 113/465 (24%), Positives = 179/465 (38%), Gaps = 54/465 (11%) Query: 1 MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHF 60 + A T + LVW R +LRI DN AL A +I ++I E R++ F Sbjct: 9 LYADTCAAHTLVWFRQNLRIRDNAALCTAVAEG-LPIIGIWIDDAETDN-----PRRAAF 62 Query: 61 IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120 S ++ + L+ +GI S L ++ + + + + + D Sbjct: 63 YRQSAAELAQGLAGRGIPLY------TAASPAGLVRLAVRLNIRAVIADESHTFADKLAD 116 Query: 121 KLLEKRLQHRVICKSF-DDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPV 179 L L I +F +D + ++ Y + +R+ + + P Sbjct: 117 NALWHELDKHGIALTFVNDRAVFGKTDLIPDGGTAYADFDRYREVWLDRFSKQP----PA 172 Query: 180 PAIRLTGPVTPSNIPRFFDYPFQAIDPMFPI---GEQNALHILRKFCKEKVYYYVEQRDI 236 P P D +F GE A R+F ++ Y +D Sbjct: 173 GPDLFAAYRQPFPENLSAPPPAALSDGIFLPQNSGETAAWRQWRRFLEQA-DSYSVLKDF 231 Query: 237 PAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMA 296 P+ + TS + YLS G +SPR E ++ W + +I R+F+ L Sbjct: 232 PSRKHTSLMGAYLSAGCISPRLLARESLERRLNA----------WADNIIRRDFFLQLAL 281 Query: 297 FYPSVCMGKPFIPWTEKIEWNKDSHL---LQAWKQGYTGFPIIDAAMRQLNTIGWMHNRL 353 + T+ + + L W+QG TG PIIDAAMR L+ G +H L Sbjct: 282 QH------------TDDDPSDGNPEHTLRLTLWQQGRTGIPIIDAAMRCLHKTGSLHPAL 329 Query: 354 RMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTI 413 R ++A F L + R GE +F QL D D A N G W+ AAS + Sbjct: 330 RRLSADFFCHVLNLPRREGEIWFARQLTDFDAAINQGNWRLAASRHT-------CPDIAA 382 Query: 414 QGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPL 458 + DP GTF+R +PEL ++ +H P + D + YP Sbjct: 383 AAHKTDPDGTFVRRHIPELAHLSADTVHTPWRFACSVD-THGYPA 426 >gi|325205374|gb|ADZ00827.1| putative deoxyribodipyrimidine photolyase [Neisseria meningitidis M04-240196] Length = 433 Score = 239 bits (609), Expect = 1e-60, Method: Composition-based stats. Identities = 113/465 (24%), Positives = 179/465 (38%), Gaps = 54/465 (11%) Query: 1 MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHF 60 + A T + LVW R +LRI DN AL AA +I ++I E R++ F Sbjct: 9 LYADTCAAHTLVWFRQNLRIRDNAALCAAVAEG-LPIIGIWIDDAETDN-----PRRAAF 62 Query: 61 IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120 S ++ + L+ +GI S L ++ + + + + + D Sbjct: 63 YRQSAAELAQGLAGRGIPLY------TAASPAELVRLAVRLNIRAVIADESHTFADKLAD 116 Query: 121 KLLEKRLQHRVICKSF-DDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPV 179 L L I +F +D + ++ + + +R+ + + P Sbjct: 117 NALWHELNKHGIALTFVNDRAVFGKTDLIPDGGTAHTDFDRYREVWLDRFSKQP----PA 172 Query: 180 PAIRLTGPVTPSNIPRFFDYPFQAIDPMFPI---GEQNALHILRKFCKEKVYYYVEQRDI 236 P P D +F GE A R+F ++ Y +D Sbjct: 173 GPDLFAAYRQPFPENLSAPPPAALSDGIFLPQNSGETAAWRQWRRFLEQA-DSYSVLKDF 231 Query: 237 PAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMA 296 P+ + TS + YLS G +SPR E ++ W + +I R+F+ L Sbjct: 232 PSRKHTSLMGAYLSAGCISPRLLARESLERRLNA----------WADNIIRRDFFLQLAL 281 Query: 297 FYPSVCMGKPFIPWTEKIEWNKDSHL---LQAWKQGYTGFPIIDAAMRQLNTIGWMHNRL 353 + T+ + + L W+QG TG PIIDAAMR L+ G +H L Sbjct: 282 QH------------TDDDPSDGNPEHTLRLTLWQQGQTGIPIIDAAMRCLHKTGSLHPAL 329 Query: 354 RMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTI 413 R ++A F L + R GE +F QL D D A N G W AAS + Sbjct: 330 RRLSADFFCHVLNLPRREGEIWFARQLTDFDAAINQGNWWLAASRHT-------CPDIAA 382 Query: 414 QGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPL 458 + DP GTF+R +PEL ++ +H P + D + YP Sbjct: 383 AAHKTDPDGTFVRRHIPELAHLSADTVHTPWRFACSVD-THGYPA 426 >gi|325203409|gb|ADY98862.1| putative deoxyribodipyrimidine photolyase [Neisseria meningitidis M01-240355] Length = 433 Score = 238 bits (608), Expect = 1e-60, Method: Composition-based stats. Identities = 114/465 (24%), Positives = 179/465 (38%), Gaps = 54/465 (11%) Query: 1 MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHF 60 + A T + LVW R +LRI DN AL AA +I ++I E R++ F Sbjct: 9 LYADTCAAHTLVWFRQNLRIRDNAALCAAVAEG-LPIIGIWIDDAETDN-----PRRAAF 62 Query: 61 IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120 S ++ + L+ +GI S L ++ + + + + + D Sbjct: 63 YRQSAAELAQGLAGRGIPLY------TAASPAELVRLAVRLNIRAVIADESHTFADKLAD 116 Query: 121 KLLEKRLQHRVICKSF-DDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPV 179 L L I +F +D + ++ + + +R+ + + P Sbjct: 117 NALWHELNKHGIALTFVNDRAVFGKTDLIPDGGTAHTDFDRYREVWLDRFSKQP----PA 172 Query: 180 PAIRLTGPVTPSNIPRFFDYPFQAIDPMFPI---GEQNALHILRKFCKEKVYYYVEQRDI 236 P P D +F GE A R+F ++ Y +D Sbjct: 173 GPDLFAAYRQPFPENLSAPPPAALSDGIFLPQNSGETAAWRQWRRFLEQA-DSYSVLKDF 231 Query: 237 PAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMA 296 P+ + TS + YLS G +SPR E ++ W + +I R+F+ L Sbjct: 232 PSRKHTSLMGAYLSAGCISPRLLARESLERRLNA----------WADNIIRRDFFLQLAL 281 Query: 297 FYPSVCMGKPFIPWTEKIEWNKDSHL---LQAWKQGYTGFPIIDAAMRQLNTIGWMHNRL 353 + T+ + + L W+QG TG PIIDAAMR L+ G +H L Sbjct: 282 QH------------TDDDPSDGNPEHTLRLTLWQQGQTGIPIIDAAMRCLHKTGSLHPAL 329 Query: 354 RMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTI 413 R ++A F L + R GE +F QL D D A N G W AAS + Sbjct: 330 RRLSADFFCHVLNLPRREGEIWFARQLTDFDAAINQGNWWLAASRHT-------CPDIAA 382 Query: 414 QGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPL 458 R DP GTFI+ +PEL ++ +H P + D + YP Sbjct: 383 ASYRTDPDGTFIKRHIPELAHLSADTVHTPWRFACSVD-THGYPA 426 >gi|325137115|gb|EGC59711.1| putative deoxyribodipyrimidine photolyase [Neisseria meningitidis M0579] Length = 433 Score = 238 bits (608), Expect = 1e-60, Method: Composition-based stats. Identities = 111/462 (24%), Positives = 178/462 (38%), Gaps = 48/462 (10%) Query: 1 MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHF 60 + A T + LVW R +LRI DN AL A VI ++I E R++ F Sbjct: 9 LYADTCAAHTLVWFRQNLRIRDNAALCTAVAEG-LPVIGIWIDDAETDN-----PRRAAF 62 Query: 61 IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120 S ++ + L+ +GI S L ++ + + + + + D Sbjct: 63 YRQSAAELAQGLAGRGIPLY------TAASPAELVRLAVRLNIRAVIADESHTFADKLAD 116 Query: 121 KLLEKRLQHRVICKSF-DDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPV 179 L L I +F +D + ++ Y + +R+ + + + Sbjct: 117 NALWHELDKHGIALTFVNDRAVFGKTDLIPDGGTAYADFDRYREVWLDRFSKQPPAGPDL 176 Query: 180 PAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAI 239 A + P+ P GE A R+F ++ Y +D P+ Sbjct: 177 FAAYRQPFPENLSAPQPAALSDGIFLPQ-NGGETAAWRQWRRFLEQA-DSYSVLKDFPSR 234 Query: 240 QGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYP 299 + TS + YLS G +S R E ++ W + +I R+F+ L + Sbjct: 235 KNTSLMGAYLSAGCISSRLLARESLERRLNA----------WADNIIRRDFFLQLALQH- 283 Query: 300 SVCMGKPFIPWTEKIEWNKDSHL---LQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMI 356 + + + L W+QG TG PIIDAAMR L+ G +H LR + Sbjct: 284 -----------ADDDPSDGNPEHTLRLTLWQQGQTGIPIIDAAMRCLHKTGGLHPALRRL 332 Query: 357 TASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGK 416 +A F L + R GE +F QL D D+A N G W+ AAS + Sbjct: 333 SADFFCHVLNLPRREGEIWFARQLTDFDVAINQGNWRLAASRHTYP-------DIAAASY 385 Query: 417 RFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPL 458 R DP GTFI+ +PEL ++ +H P + D + YP Sbjct: 386 RTDPDGTFIKRHIPELAHLSADTVHTPWRFACSVD-THGYPA 426 >gi|5689255|dbj|BAA82885.1| blue-light photoreceptor [Oryza sativa Japonica Group] Length = 681 Score = 238 bits (608), Expect = 1e-60, Method: Composition-based stats. Identities = 102/325 (31%), Positives = 156/325 (48%), Gaps = 18/325 (5%) Query: 174 LRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPM----FPIGEQNALHILRKFCKEKVYY 229 L + L PS+ F D + + + + G QNA L F + Sbjct: 184 LPPKRIAPGELPARRCPSDELVFEDESERGSNALLARAWSPGWQNADKALAAFLNGPLMD 243 Query: 230 YVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEF----VDLLIKPKSGAFSWLNEL 285 Y R TS LSPYL G LS R+ +++++ + + +L + Sbjct: 244 YSVNRKKADSASTSLLSPYLHFGELSVRKVFHQVRMKQLMWSNEGNHAGDESCVLFLRSI 303 Query: 286 IWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNT 345 RE+ R+L +P + KP + W D + W+QG TG+P++DA MR Sbjct: 304 GLREYSRYLTFNHP-CSLEKPLLAHLRFFPWVVDEVYFKVWRQGRTGYPLVDAGMRDSRA 362 Query: 346 IGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPY 405 GW+H+R+R++ +SF VK L + WR G +YF LLDGDL S+ GWQ+ + + D Sbjct: 363 TGWLHDRIRVVVSSFFVKVLQLPWRWGMKYFWDTLLDGDLESDRLGWQYISGSLPDGREL 422 Query: 406 FRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKN------DLSLNYPLP 459 RI NP ++G +FDP G ++R WLPEL +PT++IH P + +L NYPLP Sbjct: 423 DRIDNPQLEGYKFDPHGEYVRRWLPELARLPTEWIHHPWDAPESVLQAAGIELGSNYPLP 482 Query: 460 IVDHKKACHH---TLNQYYAAKKQS 481 IV+ A L++ + + S Sbjct: 483 IVELDAAKTRLQDALSEMWELEAAS 507 >gi|90415708|ref|ZP_01223642.1| deoxyribodipyrimidine photolyase [marine gamma proteobacterium HTCC2207] gi|90333031|gb|EAS48201.1| deoxyribodipyrimidine photolyase [marine gamma proteobacterium HTCC2207] Length = 447 Score = 238 bits (608), Expect = 1e-60, Method: Composition-based stats. Identities = 107/436 (24%), Positives = 180/436 (41%), Gaps = 25/436 (5%) Query: 8 SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIAT-----PEQWRQHGISARQSHFIY 62 V L W +DLR+ DN AL A D K+I ++ A P + +S R+ F++ Sbjct: 3 KVGLFWFNHDLRMDDNAALVLAAAEVD-KLICLYCADTTNTGPGWQQPAKLSPRRREFLF 61 Query: 63 ASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKL 122 SL ++ LSQ G +E + V+ L+ E R Sbjct: 62 ESLQDLETQLSQYGQKLVVR----IQPPLEAIAQLITVHNVSHLYSANHVGSYENRIWNT 117 Query: 123 LEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQN--------LVQADL 174 L KR +S L P + ++ ++ FR+ + + + A Sbjct: 118 LRKRYPMLEFNQS-HTHTLFAPSQLPFTIDKLPASFSKFRRLIEKMDLDSVISAPLDAPE 176 Query: 175 RSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILR-KFCKEKVYYYVEQ 233 + P ++ + +F G L+ F K+ Y + Sbjct: 177 KLPPPASVADIAWQPLWRDHYSSNLDGDDSPALFKGGASAGEEHLKGYFAKDLASSYKQT 236 Query: 234 RD-IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYR 292 R+ + + +++ SP+L+ G LSPR+ +L+E + + EL+WRE+++ Sbjct: 237 RNGLDGMDYSTKFSPWLANGTLSPRRIVQQLQEY--EARAGANDSTYWIFFELLWREYFQ 294 Query: 293 HLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNR 352 + I + + + W G T + II+A M+QLNT G++ NR Sbjct: 295 WYGHRHQQQLYAFTGIAQSAPTT-SFYPERFKKWCAGNTPYAIINACMKQLNTTGYLSNR 353 Query: 353 LRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPT 412 R + AS V +L +DWR G Y QL+D D+ASN G WQ+ A G D + R F+ Sbjct: 354 GRQLVASCFVHELGLDWRHGAAYMEQQLVDYDVASNWGNWQYLAGVGADPRGHRR-FDLK 412 Query: 413 IQGKRFDPQGTFIRHW 428 Q + +DP+ F++ W Sbjct: 413 KQAQIYDPKNQFVQRW 428 >gi|325135093|gb|EGC57721.1| putative deoxyribodipyrimidine photolyase [Neisseria meningitidis M13399] Length = 433 Score = 238 bits (607), Expect = 2e-60, Method: Composition-based stats. Identities = 114/465 (24%), Positives = 179/465 (38%), Gaps = 54/465 (11%) Query: 1 MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHF 60 + A T + LVW R +LRI DN AL AA +I ++I E R++ F Sbjct: 9 LYADTCAAHTLVWFRQNLRIRDNAALCAAVAEG-LPIIGIWIDDAETDN-----PRRAAF 62 Query: 61 IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120 S ++ + L+ +GI S L ++ + + + + + D Sbjct: 63 YRQSAAELAQGLAGRGIPLY------TAASPAELVRLAVRLNIRTVIADESHTFADKLAD 116 Query: 121 KLLEKRLQHRVICKSF-DDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPV 179 L L I +F +D + ++ Y + +R+ + + P Sbjct: 117 NALWHELDKHGIALTFVNDRAVFGKTDLIPDGGTAYADFDRYREVWLDRFSKQP----PA 172 Query: 180 PAIRLTGPVTPSNIPRFFDYPFQAIDPMFPI---GEQNALHILRKFCKEKVYYYVEQRDI 236 P P D +F GE A R+F ++ Y +D Sbjct: 173 GPDLFAAYRQPFPENLSAPQPAALSDGIFLPQNSGETAAWRQWRRFLEQA-DSYSVLKDF 231 Query: 237 PAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMA 296 P+ + TS + YLS G +SPR E ++ W + +I R+F+ L Sbjct: 232 PSRKHTSLMGAYLSAGCISPRLLARESLERRLNA----------WADNIIRRDFFLQLAL 281 Query: 297 FYPSVCMGKPFIPWTEKIEWNKDSHL---LQAWKQGYTGFPIIDAAMRQLNTIGWMHNRL 353 + T+ + + L W+QG TG PIIDAAMR L+ G +H L Sbjct: 282 QH------------TDDDPSDGNPEHTLRLTLWQQGQTGIPIIDAAMRCLHKTGSLHPAL 329 Query: 354 RMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTI 413 R ++A F L + R GE +F QL D D A N G W AAS + Sbjct: 330 RRLSADFFCHVLNLPRREGEIWFARQLTDFDAAINQGNWWLAASRHT-------CPDIAA 382 Query: 414 QGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPL 458 + DP GTF+R +PEL ++ +H P + D + YP Sbjct: 383 AAHKTDPDGTFVRRHIPELAHLSADTVHTPWRFACSVD-THGYPA 426 >gi|325207317|gb|ADZ02769.1| putative deoxyribodipyrimidine photolyase [Neisseria meningitidis NZ-05/33] Length = 433 Score = 237 bits (606), Expect = 2e-60, Method: Composition-based stats. Identities = 114/465 (24%), Positives = 178/465 (38%), Gaps = 54/465 (11%) Query: 1 MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHF 60 + A T + LVW R +LRI DN AL A VI ++I E R++ F Sbjct: 9 LYADTCAAHTLVWFRQNLRIRDNAALCTAVAEG-LPVIGIWIDDAETDN-----PRRAAF 62 Query: 61 IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120 S ++ + L+ +GI S L ++ + + + + + D Sbjct: 63 YRQSAAELAQGLAGRGIPLY------TAASPAELVRLAVRLNIRAVIADESHTFADKLAD 116 Query: 121 KLLEKRLQHRVICKSF-DDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPV 179 L L I +F +D + ++ + + +R+ + + P Sbjct: 117 NALWHELDKHGIALTFVNDRAVFGKTDLIPDGGTAHTDFDRYREVWLDRFSKQP----PA 172 Query: 180 PAIRLTGPVTPSNIPRFFDYPFQAIDPMFPI---GEQNALHILRKFCKEKVYYYVEQRDI 236 P P D +F GE A R+F ++ Y +D Sbjct: 173 GPDLFAAYRQPFPENLSAPPPAALSDGIFLPQNSGETAAWRQWRRFLEQA-DSYSVLKDF 231 Query: 237 PAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMA 296 P+ + TS + YLS G +SPR E ++ W + +I R+F+ L Sbjct: 232 PSRKHTSLMGAYLSAGCISPRLLARESLERRLNA----------WADNIIRRDFFLQLAL 281 Query: 297 FYPSVCMGKPFIPWTEKIEWNKDSHL---LQAWKQGYTGFPIIDAAMRQLNTIGWMHNRL 353 + T+ + + L W+QG TG PIIDAAMR L+ G +H L Sbjct: 282 QH------------TDDDPSDGNPEHTLRLTLWQQGQTGIPIIDAAMRCLHKTGSLHPAL 329 Query: 354 RMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTI 413 R ++A F L + R GE +F QL D D A N G W AAS + Sbjct: 330 RRLSADFFCHVLNLPRREGEIWFARQLTDFDAAINQGNWWLAASRHT-------CPDIAA 382 Query: 414 QGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPL 458 R DP GTFI+ +PEL ++ +H P + D + YP Sbjct: 383 ASYRTDPDGTFIKRHIPELAHLSADTVHTPWRFACSVD-THGYPA 426 >gi|308388508|gb|ADO30828.1| deoxyribodopyrimidine photolyase [Neisseria meningitidis alpha710] Length = 433 Score = 237 bits (605), Expect = 3e-60, Method: Composition-based stats. Identities = 114/465 (24%), Positives = 178/465 (38%), Gaps = 54/465 (11%) Query: 1 MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHF 60 + A T + LVW R +LRI DN AL A VI ++I E R++ F Sbjct: 9 LYADTCAAHTLVWFRQNLRIRDNAALCTAVAEG-LPVIGIWIDDAETDN-----PRRAAF 62 Query: 61 IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120 S ++ + L+ +GI S L ++ + + + + + D Sbjct: 63 YRQSAAELAQGLAGRGIPLY------TAASPAELVRLAVRLNIRAVIADESHTFADKLAD 116 Query: 121 KLLEKRLQHRVICKSF-DDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPV 179 L L I +F +D + ++ + + +R+ + + P Sbjct: 117 NALWHELDKHGIALTFVNDRAVFGKTDLIPDGGTAHTDFDRYREVWLDRFSKQP----PA 172 Query: 180 PAIRLTGPVTPSNIPRFFDYPFQAIDPMFPI---GEQNALHILRKFCKEKVYYYVEQRDI 236 P P D +F GE A R+F ++ Y +D Sbjct: 173 GPDLFAAYRQPFPENLSAPPPAALSDGIFLPQNSGETAAWRQWRRFLEQA-DSYSVLKDF 231 Query: 237 PAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMA 296 P+ + TS + YLS G +SPR E ++ W + +I R+F+ L Sbjct: 232 PSRKHTSLMGAYLSAGCISPRLLARESLERRLNA----------WADNIIRRDFFLQLAL 281 Query: 297 FYPSVCMGKPFIPWTEKIEWNKDSHL---LQAWKQGYTGFPIIDAAMRQLNTIGWMHNRL 353 + T+ + + L W+QG TG PIIDAAMR L+ G +H L Sbjct: 282 QH------------TDDDPSDGNPEHTLRLTLWQQGRTGIPIIDAAMRCLHKTGSLHPAL 329 Query: 354 RMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTI 413 R ++A F L + R GE +F QL D D A N G W AAS + Sbjct: 330 RRLSADFFCHVLNLPRREGEIWFARQLTDFDAAINQGNWWLAASRHT-------CPDIAA 382 Query: 414 QGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPL 458 R DP GTFI+ +PEL ++ +H P + D + YP Sbjct: 383 ASYRTDPDGTFIKRHIPELAHLSADTVHTPWRFACSVD-THGYPA 426 >gi|71023669|ref|XP_762064.1| hypothetical protein UM05917.1 [Ustilago maydis 521] gi|46101498|gb|EAK86731.1| hypothetical protein UM05917.1 [Ustilago maydis 521] Length = 623 Score = 237 bits (604), Expect = 4e-60, Method: Composition-based stats. Identities = 122/577 (21%), Positives = 201/577 (34%), Gaps = 115/577 (19%) Query: 7 MSVHLV--WLRNDLRITDNKALYAACH---------NSDAKVIAVFIAT----------- 44 M+ +++ LRNDLR+ D+ L+ V+ V++ Sbjct: 1 MTRNILIALLRNDLRLHDHPILHVCSEPTPSTANFTQPITHVLPVYVFDQRHVEVSGFPR 60 Query: 45 ------------------PEQWRQHGISARQSHFIYASLLQVQKSLSQKGIVFQYHQCSN 86 + + FI S+ ++ L + G + Sbjct: 61 LEKARKDGGGKGSGEYAKTRELGLWRTGIHRIKFINESVFDLRDRLRRLGSDLAMFAGTP 120 Query: 87 FDDSIEWLDSYCLQQR-VTKLFYNRQYEINEVRRDKLLEKRLQH-RVICKSFDDSVLLPP 144 + V ++ +R+ EV K L++ L + F+ L+ Sbjct: 121 ESVIASLIHQIRAHGDTVEAVYLSREINTEEVNIQKRLQRMLSDVQCRMHMFETKSLIHS 180 Query: 145 GSILNHALQMYKVYTPFRKALIQNLVQADLRSLP------------------------VP 180 + ++ V+T FRK + +N + + P Sbjct: 181 RDLGFPVSKLPDVFTHFRKQVERNRIWRAPLASPDRLKPFAEVPVEDAAGVYSLSANKQH 240 Query: 181 AIRLTGPVTPSNIPRFFDYPFQA-----------------IDPMFP--IGEQNALHILRK 221 + V + D P A FP GE AL L Sbjct: 241 GLDRKNAVEKCLLQPLLDNPVLAHNELLARVMCKRGQVDVAHSAFPYRGGETEALARLDH 300 Query: 222 FCKE----KVYYYVEQRD-IPAIQGTSQLSPYLSIGVLSPRQCWNRLKE-----EFVDLL 271 + Y + R+ + +++ L++G+LSPR + E Sbjct: 301 YFDRSDSCPAASYKQTRNQMLGTDYSTKFGAALALGLLSPRLIAQKATELDNATHDATHN 360 Query: 272 IKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWT--------EKIEW------N 317 K G + + EL+WR+++ + + S I + EW + Sbjct: 361 ASNKGGGYWIIFELLWRDYFYFVGWKFGSKLFSLRGIEDDISARSAPSKASEWKSSASLS 420 Query: 318 KDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFM 377 W TG P+IDA M ++ G+M NR R ASFL KDL +WR G E+F Sbjct: 421 DRDDGFVRWCTAQTGVPLIDANMVEMVQTGFMSNRGRQNVASFLTKDLGWNWRHGAEFFE 480 Query: 378 SQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPT 437 S L+D + SN G WQ+ A GND R FNP QG +D G ++ WLP L+++P Sbjct: 481 SWLVDYEPNSNWGNWQYVAGVGNDPR-SSRQFNPIKQGNDYDANGEYVATWLPLLSDMPP 539 Query: 438 QYIHAPH-----SWLDKNDLSLNYPLPIVDHKKACHH 469 QY H P +W ++ + P PIV+ + H Sbjct: 540 QYRHHPWTCPDAAWAEQAHSAHYPPTPIVEQQMWRKH 576 >gi|148980022|ref|ZP_01815843.1| deoxyribodipyrimidine photolyase [Vibrionales bacterium SWAT-3] gi|145961465|gb|EDK26769.1| deoxyribodipyrimidine photolyase [Vibrionales bacterium SWAT-3] Length = 447 Score = 237 bits (604), Expect = 4e-60, Method: Composition-based stats. Identities = 109/446 (24%), Positives = 190/446 (42%), Gaps = 35/446 (7%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFI------ATPEQWRQHGISARQSHF 60 + L NDLRI DN L+ A D +++ V I + ++ A + F Sbjct: 2 KKIGLYLFTNDLRINDNTLLHRASQLVD-ELLCVAIEPKLSTYSVRLSQEQHNGAHRHLF 60 Query: 61 IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120 I ++ + +L++ G + + +D ++ + S Q+VT F + +E + Sbjct: 61 IKQAINDLALNLARLGQRLFVLERNKSEDLVQLVKS----QQVTHFFASSHCAHDERQLI 116 Query: 121 KLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVP 180 K + I + + L + ++ + +T FR + + + + V Sbjct: 117 KDTLTQCPDLFISQQHH-TTLFESDAFPFELTKLPRSFTKFRLQVERLEINTNES---VV 172 Query: 181 AIRLTGPVTPSNIPRFFDYPFQAID-PMFPIGEQNALHILR-KFCKEKVYYYVEQRD-IP 237 A P T + R +A D + GE L L F + Y + R+ + Sbjct: 173 AYLPPAPQTATYPYREPILESEASDIGDYVGGETAGLIHLESYFSNDYAGTYKQTRNALD 232 Query: 238 AIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAF 297 I+ +++ SP+L++G +SP+ + LK+ + + EL+WRE++ Sbjct: 233 GIENSTKFSPWLALGCVSPKTIYRHLKQ--FEAHRGANDSTYWIYFELLWREYFYWKCLT 290 Query: 298 YPSVCMGKPFIPWTEKIEWNKDSHL-LQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMI 356 + G+ + + + ++ WK G T +PI+DA MRQLN G+M NR R + Sbjct: 291 LGTSLFGRASNDLSNEQLLDTNTGASFARWKSGNTNYPIVDACMRQLNATGYMSNRGRQL 350 Query: 357 TASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYF---------- 406 AS L+ +L +DWR G YF SQL+D D+ASN G W + A N P Sbjct: 351 VASCLIHELGIDWRHGAAYFESQLIDYDVASNWGNWAYIAGALNPQAPQNANKQSVAHQS 410 Query: 407 ----RIFNPTIQGKRFDPQGTFIRHW 428 R F+ Q + +DP+ FI W Sbjct: 411 QFKSRHFDLVKQTEMYDPEHAFINKW 436 >gi|322694523|gb|EFY86350.1| Putative cryptochrome DASH [Metarhizium acridum CQMa 102] Length = 702 Score = 236 bits (603), Expect = 5e-60, Method: Composition-based stats. Identities = 112/513 (21%), Positives = 186/513 (36%), Gaps = 88/513 (17%) Query: 11 LVWLRNDLRITDNKALYA---ACHNSDAKVIAVFIATPEQWRQHGI-------------- 53 + LR DLR+ DN L+ A + ++ V++ + +Q G Sbjct: 8 VYLLRRDLRVADNPILHHLATASDHGFTHLLPVYVFSAQQVELSGFLKDGEQSPYPPAKS 67 Query: 54 --------SARQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQR-VT 104 ++ F ++ +++SL + G S D + V+ Sbjct: 68 QVGKFWRCGPHRAKFTAEAVWNLKRSLEELGSGLVIRCGSVKDVVDHLVKELKDAVPCVS 127 Query: 105 KLFYNRQYEINEVRRDKLLEKRLQHRVICKSFD----------DSVLLPPGSILNHALQM 154 ++ + EV+ + + + I D+ L P + + Sbjct: 128 SVWMTEEPSWEEVQEQESISSLCSQQGIEFELWKDEKYFVDDRDTGLESPADLPDVFTTY 187 Query: 155 YKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPSNIPR---FFDYPFQAIDPM---- 207 K P R+ + L + SLP + P D + + P+ Sbjct: 188 RKSQEPLREKPRKVLPRPAKSSLPAFPEEESIPAQAHPFVSPVSLEDLQKRLVKPLEHIM 247 Query: 208 ---------------FPIGEQNALHILRKFCKE-KVYYYVEQRD-IPAIQGTSQLSPYLS 250 F GE + LR K + Y + R+ + + + +LS YLS Sbjct: 248 DNPPKRPEDATDGHPFTGGETSGWARLRHLGKSSAMTSYKDTRNGLVGVDYSLKLSAYLS 307 Query: 251 IGVLSPRQCWNRLK-------EEFVDL---LIKPKSGAFSWLNELIWREFYRHLMAFYPS 300 +G L+ RQ L E++ D G EL+WR++ R A + Sbjct: 308 LGCLTARQIHEELLKLEDGTDEQYKDAVGYGEGENDGTKGIRFELLWRDYMRLCTAKFGR 367 Query: 301 VCMGKPFIPWTEKIE--WNKDSHL----------------LQAWKQGYTGFPIIDAAMRQ 342 + W + L+ ++ G TG IIDA+ R+ Sbjct: 368 KLFRLSGFRQDRSYDKKWKTANEEKAASEQEPPPAQISKILERFQNGTTGMGIIDASQRE 427 Query: 343 LNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDS 402 L G+ NR R ASF K L +DWR G E++ L+D D++SN WQ+ A TGND Sbjct: 428 LFHTGYTSNRARQNAASFFSKHLEIDWRYGAEWYEMMLVDYDVSSNWANWQYVAGTGNDP 487 Query: 403 VPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNV 435 R FNP Q +D +GT++R W+PEL + Sbjct: 488 RGDARTFNPVKQAFDYDKEGTYVRMWVPELQGL 520 >gi|45643657|gb|AAS72904.1| cryptochrome 2 variant 1 [Passer domesticus] Length = 361 Score = 236 bits (602), Expect = 7e-60, Method: Composition-based stats. Identities = 81/365 (22%), Positives = 130/365 (35%), Gaps = 23/365 (6%) Query: 16 NDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQKSLSQK 75 LR+ DN AL A ++ + ++I P + + F+ SL + SL + Sbjct: 1 KGLRLHDNPALQEALRDA-TSLRCIYILDPWFAASSAVGINRWRFLLQSLEDLDNSLRKL 59 Query: 76 GIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH-RVICK 134 + D + VT+L + E RD + K + V Sbjct: 60 NSRLFVVRGQPTD----VFPRLFKEWGVTRLTFEYDSEPFGKERDAAIIKLAKEAGVEVV 115 Query: 135 SFDDSVLLPPGSILNHAL-QMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPSNI 193 + L I+ + Y F+ + + + S + T V Sbjct: 116 IENSHTLYDLDRIIELNGHKPPLTYKRFQAIISRMELPKKPVSTVISQQMETCKVDIQEN 175 Query: 194 P-------RFFDYPFQA---IDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGT- 242 + F ++ GE AL L K + K + +R Sbjct: 176 HDDVYGVPSLEELGFPTDGLAPAVWQGGETEALARLDKHLERKAWVANYERPRMNANSLL 235 Query: 243 ---SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYP 299 + LSPYL G LS R + RL E + + + + S +L+WREF+ P Sbjct: 236 ASPTGLSPYLRFGCLSCRLFYYRLWELYKKVK-RNSTPPLSLYGQLLWREFFYTAATNNP 294 Query: 300 SVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITAS 359 + P +I W+++ L W +G TGFP IDA M QL GW+H+ R A Sbjct: 295 KFDRMEG-NPICIQIPWDRNPEALAKWAEGKTGFPWIDAIMTQLRQEGWIHHLARHAVAC 353 Query: 360 FLVKD 364 FL + Sbjct: 354 FLTRG 358 >gi|45643659|gb|AAS72905.1| cryptochrome 2 variant 2 [Passer domesticus] Length = 361 Score = 236 bits (601), Expect = 9e-60, Method: Composition-based stats. Identities = 83/365 (22%), Positives = 129/365 (35%), Gaps = 23/365 (6%) Query: 16 NDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQKSLSQK 75 LR+ DN AL +D V V+I P + + F+ SL + SL + Sbjct: 1 KGLRLHDNPALRECIQGADT-VRCVYILDPWFAASSAVGINRWRFLLQSLEDLDNSLRKL 59 Query: 76 GIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH-RVICK 134 + D + VT+L + E RD + K + V Sbjct: 60 NSRLFVVRGQPTD----VFPRLFKEWGVTRLTFEYDSEPFGKERDAAIIKLAKEAGVEVV 115 Query: 135 SFDDSVLLPPGSILNHAL-QMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPSNI 193 + L I+ + Y F+ + + + S + T V Sbjct: 116 IENSHTLYDLDRIIELNGHKPPLTYKRFQAIISRMELPKKPVSTVISQQMETCKVDIQEN 175 Query: 194 P-------RFFDYPFQA---IDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGT- 242 + F ++ GE AL L K + K + +R Sbjct: 176 HDDVYGVPSLEELGFPTDGLAPAVWQGGETEALARLDKHLERKAWVANYERPRMNANSLL 235 Query: 243 ---SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYP 299 + LSPYL G LS R + RL E + + + + S +L+WREF+ P Sbjct: 236 ASPTGLSPYLRFGCLSCRLFYYRLWELYKKVK-RNSTPPLSLYGQLLWREFFYTAATNNP 294 Query: 300 SVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITAS 359 + P +I W+++ L W +G TGFP IDA M QL GW+H+ R A Sbjct: 295 KFDRMEG-NPICIQIPWDRNPEALAKWAEGKTGFPWIDAIMTQLRQEGWIHHLARHAVAC 353 Query: 360 FLVKD 364 FL + Sbjct: 354 FLTRG 358 >gi|264678127|ref|YP_003278034.1| DNA photolyase, FAD-binding protein [Comamonas testosteroni CNB-2] gi|262208640|gb|ACY32738.1| DNA photolyase, FAD-binding protein [Comamonas testosteroni CNB-2] Length = 473 Score = 235 bits (600), Expect = 1e-59, Method: Composition-based stats. Identities = 107/440 (24%), Positives = 174/440 (39%), Gaps = 30/440 (6%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQ----WRQHGISARQSHFIY 62 MS L+WLRNDLR+ D L+AAC ++ V Q W I + ++ Sbjct: 43 MSTVLLWLRNDLRLHDQPVLHAACRMGAQYLLPVLCLPDIQARTRWGFARIGQHRRTWLT 102 Query: 63 ASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKL 122 ++ + ++ + + V +I Sbjct: 103 KTIQNLAENFHELRSQLLILNAPAAKALPALAQALGADIIV-------CEDIAAPDEQAE 155 Query: 123 LEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQ-NLVQADLRSLPVPA 181 +E + + S LL + Q+ V+TPFR+A+ L +P Sbjct: 156 VEALRASGLQVHTVWHSSLLHQDQLPWPVRQLPDVFTPFRQAVEHAKLQPYPPLPVPEAL 215 Query: 182 IRLTGPVTPSNIPR-----------FFDYPFQAIDPMFPIGEQNALHILRKFCKEK-VYY 229 R+ + + ++ + GE AL LR++ + Sbjct: 216 PRVPPHIPNEYLREQIPALSALAGPSPSLDTRSAIALLQGGESAALAHLRQYLARGLPHS 275 Query: 230 YVEQRD-IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWR 288 Y R+ + + +S+ S +L+ G LSPRQ + L++ + ++ EL+WR Sbjct: 276 YKRTRNGLVGLDYSSKWSLWLATGALSPRQAYAELRQ--FEATRGATESSYWLWFELLWR 333 Query: 289 EFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGW 348 +++R L + + D AW G TG ++DAAMR+L G+ Sbjct: 334 DYFRFLHMQHGRALYRARGLGPELATP--HDDQNFAAWCSGQTGKTLVDAAMRELAATGY 391 Query: 349 MHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRI 408 + NRLR + AS+L+ DL DWR G +F SQLLD D+ SN G W + A G D R Sbjct: 392 LSNRLRQVAASYLIHDLGCDWRAGAAWFESQLLDYDVYSNQGNWLYIAGRGTDPQGGRR- 450 Query: 409 FNPTIQGKRFDPQGTFIRHW 428 F+P Q +D G + R W Sbjct: 451 FDPVKQAATYDADGAYQRLW 470 >gi|221068159|ref|ZP_03544264.1| cryptochrome, DASH family [Comamonas testosteroni KF-1] gi|220713182|gb|EED68550.1| cryptochrome, DASH family [Comamonas testosteroni KF-1] Length = 431 Score = 235 bits (600), Expect = 1e-59, Method: Composition-based stats. Identities = 111/440 (25%), Positives = 180/440 (40%), Gaps = 30/440 (6%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHG----ISARQSHFIY 62 MS L+WLRNDLR+ D L+AAC ++ V Q R H I + ++ Sbjct: 1 MSTLLLWLRNDLRLHDQPVLHAACRMGAQYILPVLCLPDIQARTHWGFARIGPHRRAWLA 60 Query: 63 ASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKL 122 ++ + +S + + L + + +E + Sbjct: 61 NTIQNLAQSFHELRSQLLI--LDAPAAVALPALAQALGAGI--IVCEDIAAPDEQAEVQA 116 Query: 123 LEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAI 182 L + + S LL P + Q+ ++TPFR+A+ +Q + A+ Sbjct: 117 LRAA---GLQVHTVWHSSLLHPDQLPWPMRQLPDIFTPFRQAVEHAKLQPYPPLPVLEAL 173 Query: 183 RLTGPVTPSNIPRF------------FDYPFQAIDPMFPIGEQNALHILRKFCKEK-VYY 229 P PS + ++ + GE AL LR++ + Sbjct: 174 PRVPPNIPSKYRQEQVLALDAFANASNSLDARSAIALLQGGESAALAHLRQYLARGLPHS 233 Query: 230 YVEQRD-IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWR 288 Y R+ + + +S+ S +L+ G LSPRQ + L++ + ++ EL+WR Sbjct: 234 YKRTRNGLVGLDYSSKWSLWLATGALSPRQAYAELRQ--FEATRGATESSYWLWFELLWR 291 Query: 289 EFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGW 348 +++R L + + D AW G TG ++DAAMR+L G+ Sbjct: 292 DYFRFLHMQHGRALYRARGLGPELATP--HDDQNFAAWCSGQTGQTLVDAAMRELAATGY 349 Query: 349 MHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRI 408 + NRLR + AS+L+ DL DWR G +F SQLLD D+ SN G W + A G D R Sbjct: 350 LGNRLRQVAASYLIHDLGCDWRAGAAWFESQLLDYDVYSNQGNWLYIAGRGTDPQGGRR- 408 Query: 409 FNPTIQGKRFDPQGTFIRHW 428 F+P Q +D G + R W Sbjct: 409 FDPVKQAATYDADGAYQRLW 428 >gi|195941048|ref|ZP_03086430.1| deoxyribodipyrimidine photolyase [Escherichia coli O157:H7 str. EC4024] Length = 172 Score = 235 bits (599), Expect = 1e-59, Method: Composition-based stats. Identities = 117/170 (68%), Positives = 137/170 (80%) Query: 310 WTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDW 369 WTE+++W + LL+AW+ G TGFPI+DAAMRQLN GWMHNRLRMITASFLVKDLL+DW Sbjct: 2 WTEEVQWQSNETLLKAWQHGLTGFPIVDAAMRQLNETGWMHNRLRMITASFLVKDLLIDW 61 Query: 370 RIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWL 429 R GE YF+SQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG+RFD G FIR W+ Sbjct: 62 RTGERYFISQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGQRFDADGEFIRRWV 121 Query: 430 PELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479 PEL +VP + IH P W DK ++LNYP PIVDHK+A TL Y AA+K Sbjct: 122 PELKDVPAKAIHEPWVWADKQRVTLNYPRPIVDHKQARVATLAAYEAARK 171 >gi|71005224|ref|XP_757278.1| hypothetical protein UM01131.1 [Ustilago maydis 521] gi|46096457|gb|EAK81690.1| hypothetical protein UM01131.1 [Ustilago maydis 521] Length = 881 Score = 235 bits (599), Expect = 2e-59, Method: Composition-based stats. Identities = 133/605 (21%), Positives = 212/605 (35%), Gaps = 151/605 (24%) Query: 8 SVHLVWLRNDLRITDNKALYAACHNSDAKV-------------------------IAVFI 42 SV + LR DLRI DN Y A V + VF+ Sbjct: 27 SVLICLLRLDLRIHDNPLFYYAHQTHKPIVTTAEKTVDLSKLEDEALLGSTADYLLPVFV 86 Query: 43 ATPEQ--------------------WRQHGISARQSHFIYASLLQVQKSLSQKGIVFQYH 82 + + ++ F+ S+ V+ L G Sbjct: 87 FDEREVELSGLPGYQRKGPEARTKEYGFWKTGGFRTRFVSESVYDVRSRLRSVGSDLFIR 146 Query: 83 QCSNFDDSIEWLDSYCLQ-QRVTKLFYNRQYEINEVRRDKLLEKRLQ-HRVICKSFDDSV 140 D + ++ + V ++ ++ E+ + + ++L+ V + + Sbjct: 147 FGIPEDVISNLVKAFQAEGTHVEGVWLQKEMTYPEINVENAIVEKLRGSGVPVQFVNGKT 206 Query: 141 LLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAI------------------ 182 L+ P + + + V+TPFRK + PA Sbjct: 207 LIHPADLPFESSETPDVFTPFRKKVEALGASMVRPVKHPPAKFKSFPPGVPSTPDYALDV 266 Query: 183 ------------------RLTGPVTPSNIPRFFDYPFQAID-----------------PM 207 + G V+ +I RF P Sbjct: 267 SYEVDVDGLAPRALETKDKQEGQVSFHDILRFLLTPLNDSQLPPTLEASALLQQRHPASA 326 Query: 208 FP--IGEQNALHILR-KFCKEKVYY--------------YVEQRD-IPAIQGTSQLSPYL 249 FP GE +AL L F + K Y + R+ + ++++SP+L Sbjct: 327 FPLRGGESSALERLDWYFVRGKSADSSRWGKSDPPPVARYKQTRNNLIGHAYSTKMSPFL 386 Query: 250 SIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFY----------- 298 + G +SPRQ W L + + + EL+WR+++ + + Sbjct: 387 AYGSVSPRQIWEALDDH--ERKFGEDQNTYWVRFELLWRDYFFFVAEKFGHLLYDLGGFE 444 Query: 299 ----PSVCMGKPFIPWTEKIEWNKD--SHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNR 352 P K W K + KD H + +G TG P IDA + +L G+M NR Sbjct: 445 RATDPRQAAKKMEDGWWRKWDPLKDGPDHEMTRLLEGRTGIPFIDANILELRESGFMSNR 504 Query: 353 LRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPT 412 R ASFL KDL DWRIG E+F S L+D D SN G WQ+ A GND R FN Sbjct: 505 GRQNVASFLSKDLGYDWRIGAEFFQSHLIDYDPTSNYGNWQYVAGVGNDPR-ASRQFNTV 563 Query: 413 IQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLD-----------KNDLSLN-YPL-P 459 Q K +D G +++ W+P L N+ Y+H P K D++++ YP P Sbjct: 564 KQAKDYDSHGDYVKLWIPALRNLHADYVHTPWLLTADERRRYGLKTTKMDVTIDGYPAQP 623 Query: 460 IVDHK 464 + +H+ Sbjct: 624 LFEHE 628 >gi|311697144|gb|ADQ00016.1| deoxyribodipyrimidine photolyase [marine bacterium HP15] Length = 505 Score = 234 bits (596), Expect = 3e-59, Method: Composition-based stats. Identities = 102/495 (20%), Positives = 188/495 (37%), Gaps = 31/495 (6%) Query: 9 VHLVWLRNDLRITDNKALYAACH--NSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 + + L+ +LR+ D+ Y A V+ ++I P RQ I + +FI+ +L Sbjct: 1 MQVFLLKRNLRLQDSDPFYEAMRGYRRFGPVLPLYIHEPSIIRQPDICLQHQNFIFETLD 60 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEIN-EVRRDKLLEK 125 ++ + + G +++ LD + ++ +++ + RDK + K Sbjct: 61 ELSQEIRSIGGKLL----ELVGEAVPTLDVIHQIAPIARICTHQETTQGVQYERDKAVRK 116 Query: 126 RL-QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL 184 ++ V F ++ G + + +++ DL Sbjct: 117 WCSRNSVKLVEFQQDGVVRAGCRDQKKQTFPEYFADSVNRELKDPGGIDLGVRFASTPLP 176 Query: 185 TGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCK-EKVYYYVEQRDIP--AIQG 241 + P + +D PF+ G A + + F + Y + P A +G Sbjct: 177 SAPRVTIPRAQGYDRPFR-----QRGGRSEAEKLFKDFFSVGSINSYPFKLSSPNTAWEG 231 Query: 242 TSQLSPYLSIGVLSPRQCWNRLKEEF--------VDLLIKPKSGAFSWLNELIWREFYRH 293 S++S YLS G++S R + + K + A +L+ L+WR Y Sbjct: 232 CSRISAYLSYGIVSDRAVMKAIDDVVSSGHSYMDAAAFEKLQGRARFYLDRLMWRRNYLQ 291 Query: 294 LMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRL 353 + P++ + +++ L +AW+ G TGFP IDA +R L GW++ R Sbjct: 292 MFEDDPTLEHRHALSQFDGVRISDREDPLFKAWQSGRTGFPFIDACVRCLKETGWLNMRG 351 Query: 354 RMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTI 413 R SF +L D + + LD + Q + T + ++ P Sbjct: 352 RAAITSFATMNLWHDSLNVAAFLAGEFLDYMPGIHWPIIQVVSGTAS-PQNGIMVYCPMK 410 Query: 414 QGKRFDPQGTFIRHWLPELNNVPTQYIHA------PHSWLDKNDLSLNYPLPIVDHKKAC 467 Q D G FIR ++PEL+++ +IH S L + L YP PIVDH Sbjct: 411 QALDHDKDGVFIRKYVPELSDLQAPHIHDLSRTTNHLSDLARRSGFLPYPAPIVDHIATA 470 Query: 468 HHTLNQYYAAKKQSL 482 + +K + Sbjct: 471 RVAKKRVSYLQKGKV 485 >gi|254506014|ref|ZP_05118159.1| cryptochrome dash [Vibrio parahaemolyticus 16] gi|219551237|gb|EED28217.1| cryptochrome dash [Vibrio parahaemolyticus 16] Length = 412 Score = 233 bits (595), Expect = 4e-59, Method: Composition-based stats. Identities = 103/429 (24%), Positives = 183/429 (42%), Gaps = 35/429 (8%) Query: 8 SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIAT------PEQWRQHGISARQSHFI 61 +V L W NDLR +N L A + D +++AV+ +H + + FI Sbjct: 4 TVGLYWFINDLRRLNNSLLDRAINEVD-ELVAVYCLPHVTEYLAAFSGEHNLGTHRERFI 62 Query: 62 YASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDK 121 + S+ + +SL+ G+ + E ++ Q+ V+ L+ + +E Sbjct: 63 HQSVEDLSESLAALGVELNIVEQGTTKAVAEIIE----QRGVSHLYVSEVAGFDETVMIN 118 Query: 122 LLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPA 181 +++++ + +S D++ L + ++ +T FRK + Sbjct: 119 VIKQKFPTLEVIQS-DNTTLFHSDQLPFPLDELPATFTQFRKQVEPIF------------ 165 Query: 182 IRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNA-LHILRKFCKEKVYYYVEQRDIPAIQ 240 + + + A GE+ A H+ F + Y E R+ + Sbjct: 166 -----ELLYPSQDALYRLGEIATPTGVVGGERAAIQHVTWYFSQPFASSYKETRNHLEGE 220 Query: 241 GTS-QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYP 299 +S SP+L++G +SP Q L++ + + + EL+WRE++ + Sbjct: 221 SSSTHFSPWLALGCISPAQIVALLRQY--EQRNGANQSTYWIIFELLWREYFYWYGRKHQ 278 Query: 300 SVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITAS 359 + + ++ D Q W +G T F I+++ M QLN G+M NR R + AS Sbjct: 279 QRVFYFSGLTSKQALK-PFDDEAFQRWVKGETDFAIVNSCMNQLNETGFMSNRGRQLVAS 337 Query: 360 FLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFD 419 L+ +L +DWR G YF +QL+D D+ SN G WQ+ A G D P R FN Q + +D Sbjct: 338 CLIHELGLDWRRGAAYFETQLIDYDVTSNWGNWQYLAGVGADPNPSRR-FNLAKQAELYD 396 Query: 420 PQGTFIRHW 428 P +F R W Sbjct: 397 PDSSFTRRW 405 >gi|326793764|ref|YP_004311584.1| cryptochrome, DASH family [Marinomonas mediterranea MMB-1] gi|326544528|gb|ADZ89748.1| cryptochrome, DASH family [Marinomonas mediterranea MMB-1] Length = 458 Score = 233 bits (595), Expect = 5e-59, Method: Composition-based stats. Identities = 110/442 (24%), Positives = 186/442 (42%), Gaps = 33/442 (7%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISA----------- 55 MS+ ++W +DLRI DN LY A D ++I ++ ++P+ Sbjct: 1 MSMGIIWFGDDLRINDNSLLYQASREVD-RLICLYCSSPDDNNVDNSDPIRSSNTPSTFD 59 Query: 56 --------RQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLF 107 ++ F + L + SL + ++ ++ + +T ++ Sbjct: 60 NTSIKPSEHRTLFRHMGALDLDHSLRRLHNKLWVSS----KNASATIEFLVSKYPITHIY 115 Query: 108 YNRQYEINEVRRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQ 167 + INE L+ R + + L ++ ++ + +T FRK + Sbjct: 116 RHHHAGINEATTLTKLQARYTD-IRWITEYGLTLFSRHALPFSLNELPESFTKFRKLVET 174 Query: 168 NLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHIL-RKFCKEK 226 V ++++ + + + F F GE A L F Sbjct: 175 IDVPKTIKAVDRLPPPVA--INSPYVKTLPHTSFALDGSPFVGGESYAHAHLADYFSSGA 232 Query: 227 VYYYVEQRD-IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNEL 285 Y E R+ + +++ SP+L+ G +SPRQ N L F + + + EL Sbjct: 233 ASTYKETRNTMDDWMSSTKFSPWLAQGAISPRQVMNSL--AFYESRMGSNDSTYWIYFEL 290 Query: 286 IWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNT 345 +WRE+++ Y + K I + + + + + W G T FPI++AAM+QLNT Sbjct: 291 LWREYFQWYSMKYGARLFSKSGI-HNKTLNSSFYAERFRKWCAGSTPFPIVNAAMKQLNT 349 Query: 346 IGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPY 405 G++ NR R + AS L+ DL +DWR G YF SQL+D D+ASN G WQ+ A G D Sbjct: 350 TGYISNRARQLAASSLIYDLEIDWRYGATYFESQLIDFDVASNWGNWQYIAGVGADPRG- 408 Query: 406 FRIFNPTIQGKRFDPQGTFIRH 427 R FN Q + +DP FI Sbjct: 409 GRHFNLDKQTQLYDPDKAFINK 430 >gi|88859578|ref|ZP_01134218.1| Deoxyribodipyrimidine photolyase [Pseudoalteromonas tunicata D2] gi|88818595|gb|EAR28410.1| Deoxyribodipyrimidine photolyase [Pseudoalteromonas tunicata D2] Length = 437 Score = 231 bits (590), Expect = 2e-58, Method: Composition-based stats. Identities = 108/429 (25%), Positives = 173/429 (40%), Gaps = 22/429 (5%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPE-----QWRQHGISARQSHFI 61 + L +DLR+ DN AL + D +I +++ P+ Q+ Q SA + F+ Sbjct: 2 KKIGLFIFDHDLRVLDNPALKVLADSVDT-LICLYVHVPQDAFSQQFSQTQPSAAKLGFL 60 Query: 62 YASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDK 121 L+++ ++L S + +Y +T + NE + Sbjct: 61 QQHLVELDENLRLLNQFLVIEHGSV----PSVVSNYIKHYGITDIGRTIHAGFNEQHHWQ 116 Query: 122 LLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPA 181 L+ V + S L + + K +TP RK Q V P+ A Sbjct: 117 YLQATFPA-VKFCAHSGSSLFRLADLPFELADLPKSFTPCRKLFEQLTV-----PAPLEA 170 Query: 182 IRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILR-KFCKEKVYYYVEQRD-IPAI 239 + P S + D A + + GE A L F + Y E R+ + Sbjct: 171 LTYLPPPLLSTEHKKHDLKPSAFNRYYNGGEITAHAYLHHYFSSKAPSIYKETRNALMGD 230 Query: 240 QGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYP 299 +++LS +L+ G LSPRQ LK + + EL+WRE++ + Sbjct: 231 DFSTKLSGFLAHGALSPRQIMAALKRY--ESTQGANESTYWIYFELLWREYFYWYARKHQ 288 Query: 300 SVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITAS 359 + + + + W +G T +P+++A MR+LN GWM NR R I AS Sbjct: 289 QRLFS-AGGVRQKSLATSFYPSRFKQWCEGSTPYPLVNALMRELNETGWMSNRGRQIVAS 347 Query: 360 FLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFD 419 V +L +DWR G YF +L+D D+ SN G WQ+ A G D R F+ Q +D Sbjct: 348 CFVNELELDWRYGAAYFEQRLIDYDVGSNWGNWQYLAGVGPDPRG-GRHFHIKKQAALYD 406 Query: 420 PQGTFIRHW 428 P F+ W Sbjct: 407 PNNAFVTFW 415 >gi|255533599|ref|YP_003093971.1| cryptochrome, DASH family [Pedobacter heparinus DSM 2366] gi|255346583|gb|ACU05909.1| cryptochrome, DASH family [Pedobacter heparinus DSM 2366] Length = 430 Score = 231 bits (590), Expect = 2e-58, Method: Composition-based stats. Identities = 94/407 (23%), Positives = 170/407 (41%), Gaps = 22/407 (5%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISAR-----QSHFIYASL 65 LVW RNDLR+ DN+ L A SD+ ++ V+ P + ++ F+ S+ Sbjct: 7 LVWFRNDLRLHDNEMLVEAIAKSDS-ILPVYFFDPRYFENTRFGTAKTGIVRASFLLESI 65 Query: 66 LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125 L ++K+ + G Q D + Q + +++++R+ E +E Sbjct: 66 LSLRKAFQRFGGDILLVQGKPED----MIRDLVEQFDIAEVYHHREVGPEETEISGHVED 121 Query: 126 RLQH-RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL 184 L ++ K F L + + V+ F+K ++ + P I Sbjct: 122 LLWTLKINLKHFIGHTLYNKEDLPFPIKDIPDVFAQFKKKTERDAIVKACFLTPEH-IDF 180 Query: 185 TGPVTPSNIPRFFDYPFQA-----IDPMFPIGEQNALHILRKFCKEKVYYYVEQ--RDIP 237 +P D F+ I+ GE + L L + + Y++Q + P Sbjct: 181 VENADWGQLPSLKDLGFETVAGAMIEKYATGGEDSGLQHLAQLLEAGADIYLKQNTKHTP 240 Query: 238 AIQG-TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMA 296 G +S+LS +L+IG LSPR + ++KE + + + L+WR+++R + Sbjct: 241 EKPGFSSRLSAWLTIGCLSPRMVYWKVKE--AEGVFGLNANFSQIFLGLLWRDYFRFMFK 298 Query: 297 FYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMI 356 + + + + + L+ WK G T P++D M LN G++ + R++ Sbjct: 299 KHGIAFLQETDLEKDIMQAIERVDPALEKWKTGCTAHPVVDKYMYDLNATGFIPHSGRLL 358 Query: 357 TASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSV 403 A++LV L + W G YF +L+D ASN G W A G D+ Sbjct: 359 VATYLVHVLKIHWTCGAAYFEEKLIDYAPASNWGNWASVAGIGKDAR 405 >gi|149188415|ref|ZP_01866708.1| deoxyribodipyrimidine photolyase [Vibrio shilonii AK1] gi|148837633|gb|EDL54577.1| deoxyribodipyrimidine photolyase [Vibrio shilonii AK1] Length = 472 Score = 231 bits (589), Expect = 2e-58, Method: Composition-based stats. Identities = 108/442 (24%), Positives = 173/442 (39%), Gaps = 25/442 (5%) Query: 1 MKATTAMS--VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFI-----ATPEQWRQHGI 53 M MS + W +DLR+ DNK L A + D F Sbjct: 21 MTLGNGMSKRRGIYWFNHDLRLHDNKLLQKASEHVDRLHCVYFDELKTMYDRRFLPVEID 80 Query: 54 SARQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYE 113 + + F +L ++ +SL Q G V ++ D+++ L+ +T L+ Sbjct: 81 DSAKREFKMQALGELNQSLMQLGQVLHQVSVTSLDEAVSQLEQMFDYYSITDLYVANSAS 140 Query: 114 INEVRRDKLLEKRLQHRVICKSFDDSV--LLPPGSILNHALQMYKVYTPFRKALIQNLVQ 171 D ++ K L R D L + + +T F+ + +V Sbjct: 141 WY---IDYVVTKALLKRTDIVLHRDDTESLFHQTLLPFDLEDLPHSFTRFKNKMESIVVP 197 Query: 172 ADLRS---LPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNAL-HILRKFCKEKV 227 + ++ LP P G + + GE L H+ F + Sbjct: 198 SPSQTTTQLPRPMNNRDGLPASYGC----EPSSLKLHSSVRGGELAGLGHVRDYFATQAA 253 Query: 228 YYYVEQRD-IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELI 286 Y R+ + +++ S +L+ G +SPR N+L + + L EL+ Sbjct: 254 LSYKSTRNELDNWSSSTKFSLWLANGNVSPRAVVNQLHR--FEQKHGSNESTYWILFELL 311 Query: 287 WREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTI 346 WRE++ Y + I + + L+ W +G T FPI++A M QL Sbjct: 312 WREYFHWYSHKYGAKLFAFGGIQDKRPLTTFY-ASRLRQWVEGNTPFPIVNACMNQLRET 370 Query: 347 GWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYF 406 G+M NR R + AS LV +L +DWR G YF L+D D+ SN G WQ+ A G D Sbjct: 371 GYMSNRGRQLVASCLVHELSLDWRYGACYFQHMLIDYDVGSNWGNWQYLAGVGADPRGN- 429 Query: 407 RIFNPTIQGKRFDPQGTFIRHW 428 R F+ Q + +DP+ FIR W Sbjct: 430 RKFDLDKQSQLYDPESVFIRKW 451 >gi|322707152|gb|EFY98731.1| cryptochrome-2 [Metarhizium anisopliae ARSEF 23] Length = 566 Score = 231 bits (588), Expect = 2e-58, Method: Composition-based stats. Identities = 109/469 (23%), Positives = 163/469 (34%), Gaps = 78/469 (16%) Query: 87 FDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHRVICKSFD-DSVLLPPG 145 + +VT L + + + +RD ++ K + + L Sbjct: 33 REAPQTLFPKLLKAWKVTHLVFEKDTDAYARQRDDVVAKAAKAAGVKVVIHSGRTLWDSD 92 Query: 146 SIL-NHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIR--------------------- 183 I+ +H + T A + + P Sbjct: 93 EIVAHHDGKPAMSMTQLLSAAKKVGQVPRPIAAPKSLPDPGDMPLDFGQHVPSSVPDVNA 152 Query: 184 ------------LTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYY-- 229 + GP I + F A + GE AL L K K Y Sbjct: 153 QTREKKDTAYKSIAGPKGDFAIETLEELGFPAATTPYRGGESIALKNLADIAKNKKYTAT 212 Query: 230 YVEQRDIPAI---QGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELI 286 + + + PA Q T+ LSP+L G LS R+ + R+++ + S +LI Sbjct: 213 FEKPKTSPAQFEPQSTTLLSPFLHFGALSVREFYWRVQDVVEAYGKGASTPPASLTGQLI 272 Query: 287 WREFYRHLMAFYPSVCMGKPFIPWTEKIEW---------------------NKDSHLLQA 325 +R+ Y A + P+ I W + Q Sbjct: 273 FRDMYFAAQAAVGAKFTQTAGNPYCRFIPWHLPSERDSQTGLVTDKYTVDSDDAEKWFQR 332 Query: 326 WKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGD 384 WK+G TGFP IDA MRQL GW+H+ R A FL + VDW G E F LLD + Sbjct: 333 WKRGVTGFPWIDALMRQLLHTGWIHHLGRHSLACFLTRGGCYVDWERGAEVFEVHLLDHE 392 Query: 385 LASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPH 444 A N G WQW S YFR ++P G+++D G IR W+PEL N+ ++YI+ P Sbjct: 393 PACNAGNWQW-LSCTAFFSQYFRCYSPVSFGQKWDKNGDLIRKWVPELKNLDSKYIYEPW 451 Query: 445 SWLDKNDLSLN---------------YPLPIVDHKKACHHTLNQYYAAK 478 ++ YP P+ D K +N A Sbjct: 452 KAPIQDQKKAGVRVVGDGLGDQEQGTYPKPMFDFGKRRETCINAMKIAY 500 >gi|194380702|dbj|BAG58504.1| unnamed protein product [Homo sapiens] Length = 336 Score = 231 bits (588), Expect = 3e-58, Method: Composition-based stats. Identities = 80/249 (32%), Positives = 120/249 (48%), Gaps = 10/249 (4%) Query: 239 IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFY 298 + + LSPYL G LS R + RL + + + + + S +L+WREF+ Sbjct: 7 LASPTGLSPYLRFGCLSCRLFYYRLWDLYKKVK-RNSTPPLSLFGQLLWREFFYTAATNN 65 Query: 299 PSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITA 358 P + P +I W+++ L W +G TGFP IDA M QL GW+H+ R A Sbjct: 66 PRFDRMEG-NPICIQIPWDRNPEALAKWAEGKTGFPWIDAIMTQLRQEGWIHHLARHAVA 124 Query: 359 SFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKR 417 FL + DL V W G F LLD D + N G W W S +F + P G+R Sbjct: 125 CFLTRGDLWVSWESGVRVFDELLLDADFSVNAGSWMW-LSCSAFFQQFFHCYCPVGFGRR 183 Query: 418 FDPQGTFIRHWLPELNNVPTQYIHAPHSWLD------KNDLSLNYPLPIVDHKKACHHTL 471 DP G +IR +LP+L P++YI+ P + + K + ++YP PIV+H + + Sbjct: 184 TDPSGDYIRRYLPKLKAFPSRYIYEPWNAPESIQKAAKCIIGVDYPRPIVNHAETSRLNI 243 Query: 472 NQYYAAKKQ 480 + +Q Sbjct: 244 ERMKQIYQQ 252 >gi|94501553|ref|ZP_01308071.1| Deoxyribodipyrimidine photolyase [Oceanobacter sp. RED65] gi|94426371|gb|EAT11361.1| Deoxyribodipyrimidine photolyase [Oceanobacter sp. RED65] Length = 440 Score = 230 bits (586), Expect = 4e-58, Method: Composition-based stats. Identities = 104/426 (24%), Positives = 172/426 (40%), Gaps = 21/426 (4%) Query: 10 HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQH-----GISARQSHFIYAS 64 L DLR+ D+ L A S+ ++ V+ +P ++ + ++ F+ Sbjct: 7 SLFVFSKDLRLHDHPGLKQANDLSE-RLACVYFLSPYEFEPKSFSVCPMGKQRYEFLRQG 65 Query: 65 LLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLE 124 L ++ SL+ Q + L+ Q ++ +F +R E + L+ Sbjct: 66 LCDLRNSLNDIDHELHVFQ----EKVAPGLERIIEQNKIEAVFASRCAGTYENQVWVSLQ 121 Query: 125 KRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL 184 KR Q + D L + + Y ++ FR+ + L + ++ Sbjct: 122 KR-QPNLKIHLVDSHTLFNIDQ-PDLSKSFYNSFSQFRRQAEKW--PQPLPMATILSLPA 177 Query: 185 TGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVY-YYVEQRD-IPAIQGT 242 PV + D ++ GEQ L L + Y R+ + + + Sbjct: 178 AMPVATDSARINLD-DNRSSALCITGGEQKGLEHLYDYFNGSYALQYKATRNALDGWENS 236 Query: 243 SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVC 302 S+ S +L+ G LS R L++ + L EL+WREF++ FY Sbjct: 237 SKFSYWLAQGSLSVRLILQELRQ--FESLHSNNESTEHLYMELLWREFFQWYSHFYGKQL 294 Query: 303 MGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLV 362 I + + W +G+T +P+++A M QL T G+M NR R I AS L+ Sbjct: 295 FYFSGIQKKRPLTTFY-PQAFRMWLEGHTEWPLVNACMNQLRTTGYMSNRGRQIVASCLL 353 Query: 363 KDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQG 422 +L VDWR G + F LLD D+A+N G WQ+ A G D R FN Q + +DP Sbjct: 354 NELKVDWRAGAQAFEHYLLDYDVAANWGNWQYIAGVGADPRG-GRHFNIEKQTQLYDPDN 412 Query: 423 TFIRHW 428 FI W Sbjct: 413 LFIDKW 418 >gi|88798414|ref|ZP_01113999.1| Deoxyribodipyrimidine photolyase [Reinekea sp. MED297] gi|88778854|gb|EAR10044.1| Deoxyribodipyrimidine photolyase [Reinekea sp. MED297] Length = 433 Score = 229 bits (584), Expect = 7e-58, Method: Composition-based stats. Identities = 111/450 (24%), Positives = 190/450 (42%), Gaps = 35/450 (7%) Query: 12 VWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQ-----HGISARQSHFIYASLL 66 +W D R+ DN AL A + ++ VF+ ++ + + F+ SL Sbjct: 1 MWFTQDQRLDDNPALRLAAEADE--MLCVFVVEQGWFQSRRYQYPQMGPHRWVFLQLSLS 58 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 ++ + L G + + + + + ++ R +E+R+ + LE + Sbjct: 59 ELNQRLQLHGQRLLV----VYGQAEVEIGRLVERYDINRVVRARSPGTDELRQWRWLESQ 114 Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 C++ D + L + + ++ FR L + V + ++P +T Sbjct: 115 FPETEWCQA-DAATLFEDDQVAGLSRSWPMSFSAFR-RLAERWVVPAVTAMPQLPNTITQ 172 Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFC-KEKVYYYVEQRD-IPAIQGTSQ 244 ++ +P + +A MF GE AL L + + Y R+ I +S+ Sbjct: 173 QISQLTLPDWL-PNARASHSMFDGGESEALRHLDCYLASDYPQTYKRDRNAIDDWDSSSK 231 Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHL-------MAF 297 +SP+L+ G LS R+ +L E D G EL+WRE+++ L + Sbjct: 232 MSPWLNAGNLSARRLKQKLDEY--DQQHGASDGTHWLFVELLWREYFQWLAQSIGTKLFH 289 Query: 298 YPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMIT 357 + + KP + S + W++G T + I++A MRQL G++ NR R I Sbjct: 290 FQGLSEHKPLTSFY--------SDRFRNWREGNTPWAIVNACMRQLKETGYLSNRGRQIA 341 Query: 358 ASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKR 417 AS LV +L +DWR G +F L+D D+ASN G WQ+ A G DS R FN Q + Sbjct: 342 ASALVNELALDWRYGAAWFEYCLVDYDVASNWGNWQYIAGVGTDSRG-GRHFNIDKQTEL 400 Query: 418 FDPQGTFIRHWLPELNNVPTQYIHAPHSWL 447 FD G+F W + P + P W Sbjct: 401 FDADGSFRARWAADAEPQPLDTL-DPTGWP 429 >gi|322709598|gb|EFZ01174.1| Putative cryptochrome DASH [Metarhizium anisopliae ARSEF 23] Length = 695 Score = 229 bits (584), Expect = 9e-58, Method: Composition-based stats. Identities = 111/513 (21%), Positives = 182/513 (35%), Gaps = 88/513 (17%) Query: 11 LVWLRNDLRITDNKALYA---ACHNSDAKVIAVFIATPEQWRQHGI-------------- 53 + LR DLR+ DN L+ A + ++ V++ +Q G Sbjct: 8 VYLLRRDLRVADNPILHHLATASDHGFTHLLPVYVFPAQQVELSGFLKDGEQSPYPPARS 67 Query: 54 --------SARQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQR-VT 104 ++ F ++ +++SL + G S D ++ V+ Sbjct: 68 QVGKFWRCGPHRAKFTAEAVWNLKRSLEELGSGLVIRCGSVKDVFDHLVNELKDAVPCVS 127 Query: 105 KLFYNRQYEINEVRRDKLLEKRLQHRVICKSFD----------DSVLLPPGSILNHALQM 154 ++ + EV+ + + R I D+ L P + + Sbjct: 128 SVWMTEEPSWEEVQEQESISSLCSKRGIEFKLWKDEKYFVDDRDTGLENPADLPDVFTTY 187 Query: 155 YKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPSNI---PRFFDY------------ 199 K P R+ + L + +LP + P D Sbjct: 188 RKSQEPLREKPRKVLPRPAKSALPAFPQEGSIPAQAHPFLSPVSLEDLQKRLVKPVENIM 247 Query: 200 ------PFQAIDPM-FPIGEQNALHILRKFCKE-KVYYYVEQRD-IPAIQGTSQLSPYLS 250 P A D F GE + LR K + Y + R+ + + + +LS YLS Sbjct: 248 DNPPKRPEDATDGHPFTGGETSGWARLRHLGKSSAMTSYKDTRNGLVGVDYSLKLSGYLS 307 Query: 251 IGVLSPRQCWNRLK-------EEFVDL---LIKPKSGAFSWLNELIWREFYRHLMAFYPS 300 +G L+ RQ L E++ D G EL+WR++ R A + Sbjct: 308 LGCLTARQIHEELLKLEDGTDEQYKDAVGYGEGENDGTKGIRFELLWRDYMRLCTAKFGR 367 Query: 301 VCMGKPFIPWTEKIE--WNKDSHL----------------LQAWKQGYTGFPIIDAAMRQ 342 + W L+ ++ G TG +IDA+ R+ Sbjct: 368 KLFRLSGFRQDSSYDKKWKTADEEKAGPEQEPDPAQISKILERFQNGTTGMGLIDASQRE 427 Query: 343 LNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDS 402 L G+ NR R ASF K L +DWR G E++ L+D D++SN WQ+ A GND Sbjct: 428 LFHTGYTSNRARQNAASFFSKHLEIDWRYGAEWYEMMLVDYDVSSNWANWQYVAGIGNDP 487 Query: 403 VPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNV 435 R FNP Q +D +G ++R W+PEL + Sbjct: 488 RGDARTFNPVKQAFDYDKEGIYVRMWVPELQGL 520 >gi|74696815|sp|Q7SI68|CRYD_NEUCR RecName: Full=Putative cryptochrome DASH, mitochondrial; Flags: Precursor gi|38567324|emb|CAE76612.1| related to deoxyribodipyrimidine photo-lyase [Neurospora crassa] Length = 745 Score = 229 bits (583), Expect = 1e-57, Method: Composition-based stats. Identities = 106/524 (20%), Positives = 185/524 (35%), Gaps = 97/524 (18%) Query: 8 SVHLVWLRNDLRITDNKALYAAC----HNSDAKVIAVFIATPEQWRQHGI---------- 53 V + +R +LR++DN + + + ++ V++ +Q G Sbjct: 5 KVVIYAMRRELRLSDNPIFHHLSNPESKHGFSHLLPVYVFPAQQIDLSGFVPKGSENPHP 64 Query: 54 ------------SARQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYC-LQ 100 ++ F+ S+ ++ SL G D ++ + Sbjct: 65 APKSAVGGYARCGPYRAKFLAESVWDLKTSLQSIGSDLLVRAGPYKDVIQSLVEGLKAKE 124 Query: 101 QRVTKLFYNRQYEINEVRRDKLLEKRLQHRVICKSFDDS---VLLPPGSILNHALQMYKV 157 +V ++ E +K + I D ++ + + H + V Sbjct: 125 CQVGAVWMTSHEGSEEKSEEKTVASFCAKSGIDFKLWDDEKYLIHDRDTGITHLNDLPDV 184 Query: 158 YTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPSNIP----------------------- 194 +T +R I+ L + ++LPVP ++ Sbjct: 185 FTTYR-KQIEPLREKARKTLPVPEKGALPAYPDIDMIPSQQPPFNIPGTCEELVDAVVRP 243 Query: 195 ------RFFDYPFQAIDPM-FPIGEQNALHILRKF-CKEKVYYYVEQRD-IPAIQGTSQL 245 D+P +A F GE +A + + Y + R+ + +++L Sbjct: 244 VKNFLKDLPDFPEKAESSHPFRGGETSAHKRIDHLVLSGGMKSYKDSRNGLLGPDFSTKL 303 Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIK----------PKSGAFSWLNELIWREFYRHLM 295 S YL+ G ++ RQ + L K G + EL+WR++ R Sbjct: 304 SAYLAQGCVTARQIHHALVAYEDGTGTKYKGADGFGEGDNQGTETVRMELLWRDYMRLCH 363 Query: 296 AFYPSVCM--------GKPFIPWTEKIEWNKD----------------SHLLQAWKQGYT 331 Y + +K W S +L + G T Sbjct: 364 QKYGDKLFRVEGFNGKHTDYEGEDKKYGWRTANTSIALPGQEPTPEKVSEILARFNAGTT 423 Query: 332 GFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGG 391 G +IDA+ R+L G+ NR R ASFL K L +DWR G E++ L+D D++SN Sbjct: 424 GMGLIDASQRELIHTGYTSNRTRQNVASFLAKHLEIDWRYGAEWYEMLLVDYDVSSNWAN 483 Query: 392 WQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNV 435 WQ+ A GND RIFNP Q +D GT++R W+PE+ Sbjct: 484 WQYVAGVGNDPRGAARIFNPVKQAFDYDKDGTYVRTWVPEVAKF 527 >gi|227553399|ref|ZP_03983448.1| possible deoxyribodipyrimidine photolyase [Enterococcus faecalis HH22] gi|227177482|gb|EEI58454.1| possible deoxyribodipyrimidine photolyase [Enterococcus faecalis HH22] Length = 208 Score = 228 bits (581), Expect = 2e-57, Method: Composition-based stats. Identities = 102/198 (51%), Positives = 129/198 (65%), Gaps = 7/198 (3%) Query: 288 REFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIG 347 R+FY + + +P + I+W D + W++G TG+PIIDAAMRQLN G Sbjct: 1 RDFYNMIYSAFPQQ-KEEAIQEKFRYIQWTNDPEMFVKWQKGETGYPIIDAAMRQLNQTG 59 Query: 348 WMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFR 407 WMHNRLRMITASFLVK+L +DWR GE+YF L+D D A+N GGWQWAASTG D+VPYFR Sbjct: 60 WMHNRLRMITASFLVKNLHIDWRWGEKYFQKMLIDYDAANNIGGWQWAASTGTDAVPYFR 119 Query: 408 IFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND------LSLNYPLPIV 461 IFNP IQ K+FD G FI+ ++PEL VP +YIH P+ + L NYP PIV Sbjct: 120 IFNPIIQSKKFDNDGQFIKKYVPELKQVPQKYIHQPNLMNEALQTQYHVHLGENYPKPIV 179 Query: 462 DHKKACHHTLNQYYAAKK 479 D+ + TL Y A+K+ Sbjct: 180 DYASSKKQTLFLYEASKE 197 >gi|254454708|ref|ZP_05068145.1| deoxyribodipyrimidine photolyase [Octadecabacter antarcticus 238] gi|198269114|gb|EDY93384.1| deoxyribodipyrimidine photolyase [Octadecabacter antarcticus 238] Length = 322 Score = 228 bits (581), Expect = 2e-57, Method: Composition-based stats. Identities = 79/287 (27%), Positives = 120/287 (41%), Gaps = 16/287 (5%) Query: 207 MFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ--GTSQLSPYLSIGVLSPRQCWNRLK 264 M G + A+ LR F + Y+ P S+LS +L+ G LS R+ + Sbjct: 1 MQKGGRKQAVADLRSFLNHRSRQYLYHISAPDSSEFHCSRLSAHLAWGTLSVREVAQSIV 60 Query: 265 EEFVDLLIKPKSG----AFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIE-WNKD 319 + L ++ + L WR + + P + P E + + Sbjct: 61 KRRAQLSPDENKSFGRNLTAFGSRLAWRCHFIQKIEDQPEIETH-CMHPAFEGLRVGEHN 119 Query: 320 SHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQ 379 QAW G TG+P +DA MR L GW+ R+R + SF L +DWR+ E+ Sbjct: 120 DLHFQAWASGQTGYPFVDACMRNLTAEGWITFRMRAMLVSFASYQLWLDWRVTGEHLARL 179 Query: 380 LLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQY 439 D + + Q +G + R++NP Q DP+GTFIR W+PEL +VP ++ Sbjct: 180 FTDYEPGIHYSQLQMQ--SGVTGINTMRVYNPIKQSMEHDPKGTFIRKWVPELKSVPDEF 237 Query: 440 IHAPHSWL------DKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQ 480 IH P W L +YP P+VD + Q A +K Sbjct: 238 IHEPWKWEKTLIDDRDFTLGQDYPAPLVDQAVSAKAAKQQISAIRKN 284 >gi|255080632|ref|XP_002503889.1| predicted protein [Micromonas sp. RCC299] gi|226519156|gb|ACO65147.1| predicted protein [Micromonas sp. RCC299] Length = 869 Score = 227 bits (579), Expect = 3e-57, Method: Composition-based stats. Identities = 118/511 (23%), Positives = 195/511 (38%), Gaps = 54/511 (10%) Query: 10 HLVWLRNDLRITDNKALYAACHNS---DAKVIAVFIATPEQWR-----QHGISARQSHFI 61 +VW R DLR+ DN+A AA + +V+ +F+ +P++ ++ Sbjct: 87 AVVWFRQDLRLDDNQAFRAAVRAANRRGGEVLCLFVWSPDEEGNDEGASWAPGEASRVWL 146 Query: 62 YASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDK 121 + SL + + + + + + T +F + +YE V D Sbjct: 147 HHSLDALDRD--IRRRYGGGGIRFAAGEHASAVAAAAADVNATAVFASARYEPAHVEGDA 204 Query: 122 LLEKRLQHRVI-CKSFDDSVLLPPGSI---LNHALQMYKVYTPFRKALIQNLVQADLRSL 177 + L I + +L I + + PF A + + S Sbjct: 205 RTRRALAEGGIELITLPGHLLFDRDKIRIDMERERYFFGTLMPFVHAAEKFGGEPGAPSP 264 Query: 178 P----------------VPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRK 221 V + G + PS+ R + +A + + E A + Sbjct: 265 APPTAPIAHDGSGGAGGVSTLASLGLIPPSDAARDWSAGLRAE---WDMSESGASEAWAQ 321 Query: 222 FCKEKVYYYVEQR---DIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGA 278 F + + Y D+ TS LSPYL G LSPR+ ++ L++ + G Sbjct: 322 FKRMGLAGYEATHGRCDLTHKSSTSLLSPYLRFGQLSPRRVYSELRDARFGTAVDGVEGR 381 Query: 279 F---SWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDS------HLLQAWKQG 329 ++ + L REF + +P + + + + +W L+ W++G Sbjct: 382 RLSRTFWHRLYRREFAYWQLGVFPQLAVTSWRSHYESRGDWRWPERDPAAAEDLRRWQKG 441 Query: 330 YTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNN 389 TGFP++DA MR+L GWMH RM+ A+FLV L + W G +F L+D DLA N+ Sbjct: 442 ETGFPVVDAGMRRLIRTGWMHQTERMLAATFLVDYLHIHWSHGARWFHDYLVDADLAINS 501 Query: 390 GGWQWAASTGNDSVPYFR-IFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYI-HAPHSWL 447 WQ A +G D F P + DP G I ++PEL +P ++ H P Sbjct: 502 MMWQNAGKSGLDQWDVFAGGLAPDGSARTHDPNGETIAQYVPELAGLPPGHLRHRPWEAS 561 Query: 448 DKN------DLSLNYPLPIV-DHKKACHHTL 471 K + YP IV D A L Sbjct: 562 AKTLANAGVTIGDTYPARIVPDVDAARARML 592 >gi|311029789|ref|ZP_07707879.1| deoxyribodipyrimidine photo-lyase [Bacillus sp. m3-13] Length = 220 Score = 227 bits (579), Expect = 3e-57, Method: Composition-based stats. Identities = 97/217 (44%), Positives = 125/217 (57%), Gaps = 7/217 (3%) Query: 267 FVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAW 326 +G +++ EL WR+FY + +YP K +K++WN + LL W Sbjct: 5 QEKQQTSYSTGMDTFIKELAWRDFYNMIFHYYPE-SKTKEIDDKYQKLKWNDNQDLLDLW 63 Query: 327 KQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLA 386 K+G TGFPI+DA MRQL GWMHNR+RMI ASFL KD L+DWR+GE YF L D D A Sbjct: 64 KKGKTGFPIVDAGMRQLAEEGWMHNRIRMINASFLTKDFLMDWRLGERYFEQMLHDYDEA 123 Query: 387 SNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSW 446 SN GGWQWAAS G D+VPYFR+FNP Q RFD +G +I+ +LPEL V + IH P Sbjct: 124 SNIGGWQWAASVGTDAVPYFRVFNPITQSIRFDTKGEYIKKYLPELVGVSEKKIHEPWKM 183 Query: 447 LDKND------LSLNYPLPIVDHKKACHHTLNQYYAA 477 D + +YP P+VDH + + Sbjct: 184 DDHEQEKAGCVIGKDYPRPVVDHALQRKKAIQMFKEL 220 >gi|164655927|ref|XP_001729092.1| hypothetical protein MGL_3880 [Malassezia globosa CBS 7966] gi|159102981|gb|EDP41878.1| hypothetical protein MGL_3880 [Malassezia globosa CBS 7966] Length = 400 Score = 227 bits (579), Expect = 3e-57, Method: Composition-based stats. Identities = 127/375 (33%), Positives = 169/375 (45%), Gaps = 79/375 (21%) Query: 186 GPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245 + P P A + + G + A HIL +F K KV Y E RDIP GTSQL Sbjct: 8 AQCLDWSSPESEHNPTWASEFPWIPGSETAHHILTEFLKTKVSRYSESRDIPFESGTSQL 67 Query: 246 SPYLSIGVLSPRQCWNRLKE--EFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCM 303 SPYL+ G +SP + + L+E D + ++ ELIWREF HL+ P + Sbjct: 68 SPYLAHGEISPHRVLHALREVRLNRDTPKPAIESSKTFERELIWREFNYHLLYHQPDLAT 127 Query: 304 GKPFIPW-------------------TEKIEWNKDSH-------LLQAWKQGYTGFPIID 337 W T ++ + D W+ G+TGFPI+D Sbjct: 128 QNHNEQWNLFTWSQMATESQLTEFSRTGELPPSTDEQNALNTAAAYDCWRAGHTGFPIVD 187 Query: 338 AAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAAS 397 A MRQL IGWMHNR+RMITAS L+K+L + WR+GEE+F + L+D D ASN G WQW A Sbjct: 188 AGMRQLWKIGWMHNRVRMITASLLIKNLRIHWRLGEEWFWNTLVDADPASNPGNWQWVAG 247 Query: 398 TGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELN------------------------ 433 TG D+ P+FRIFNP Q RFD + ++R W+PEL Sbjct: 248 TGADAAPFFRIFNPARQADRFDQKCAYVRTWVPELKTKTTQEVAAMYEASPRKAAKEQDE 307 Query: 434 --------NVPTQYIH---------------APHSWLDKNDL----SLNYPLPIVDHKKA 466 ++ +Q+IH P S NY IVD KK+ Sbjct: 308 DFLALTNPSLTSQWIHSSPNSGSTSNSVKYATPFSHAFSQRYVAVPETNYHNLIVDFKKS 367 Query: 467 CHHTLNQYYAAKKQS 481 L+ Y +K S Sbjct: 368 RDLALSCYQTIRKNS 382 >gi|257359518|gb|ACV53158.1| cryptochrome-like protein [Crassostrea gigas] Length = 393 Score = 227 bits (578), Expect = 4e-57, Method: Composition-based stats. Identities = 90/400 (22%), Positives = 147/400 (36%), Gaps = 33/400 (8%) Query: 18 LRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQKSLSQKGI 77 LR+ DN +L D VFI E + F+ L + K+L G Sbjct: 2 LRLHDNPSLIDGLSECDRF-YPVFIFDGEVAGTKTAGYNRFRFLLECLQDLDKNLKAAGT 60 Query: 78 VFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL-QHRVICKSF 136 Q D L+ + VTK+ + E RD+L+ + L + V C Sbjct: 61 RLYCFQGQPTD----ILERLIEEWGVTKVTFEADPEPIWQERDRLVRELLDKKNVQCVEK 116 Query: 137 DDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPSNIPRF 196 L P I+ + + + + PV T P + Sbjct: 117 VSHTLWDPYEIIENNGGSPPLTFSLFNLVTSTI---GPPPRPVEDPDFTDISLPVSQNHD 173 Query: 197 FDYPFQAIDPM---------------FPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQG 241 + +++ + + GE AL +L K + Y +P Sbjct: 174 KQFGIPSLEDLNVRPECEEQNKRLVEWLGGESKALELLAIRMKHEEKAYENGYVMPNQYH 233 Query: 242 TSQLSP------YLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLM 295 LSP +L G LS R+ + + ++F ++ S +L+WRE++ + Sbjct: 234 PDLLSPPLSLSAHLRFGCLSVRKFYWSIHDKFEEVKPS-MGAPVSLSAQLMWREYFYTMA 292 Query: 296 AFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRM 355 + + P I W + + W QG TG+P IDA M+QL GW+H+ R Sbjct: 293 INNINYDKMET-NPICLNIPWYDNPEHEEKWTQGETGYPWIDAIMKQLRYEGWVHHVARH 351 Query: 356 ITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQW 394 + FL + DL ++W +G + F LLD D + G W W Sbjct: 352 AVSCFLTRGDLWLNWEVGLKVFYKYLLDADWSVCAGNWMW 391 >gi|164428444|ref|XP_965722.2| hypothetical protein NCU00582 [Neurospora crassa OR74A] gi|157072149|gb|EAA36486.2| conserved hypothetical protein [Neurospora crassa OR74A] Length = 722 Score = 227 bits (578), Expect = 4e-57, Method: Composition-based stats. Identities = 105/518 (20%), Positives = 183/518 (35%), Gaps = 97/518 (18%) Query: 14 LRNDLRITDNKALYAAC----HNSDAKVIAVFIATPEQWRQHGI---------------- 53 +R +LR++DN + + + ++ V++ +Q G Sbjct: 1 MRRELRLSDNPIFHHLSNPESKHGFSHLLPVYVFPAQQIDLSGFVPKGSENPHPAPKSAV 60 Query: 54 ------SARQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYC-LQQRVTKL 106 ++ F+ S+ ++ SL G D ++ + +V + Sbjct: 61 GGYARCGPYRAKFLAESVWDLKTSLQSIGSDLLVRAGPYKDVIQSLVEGLKAKECQVGAV 120 Query: 107 FYNRQYEINEVRRDKLLEKRLQHRVICKSFDDS---VLLPPGSILNHALQMYKVYTPFRK 163 + E +K + I D ++ + + H + V+T +R Sbjct: 121 WMTSHEGSEEKSEEKTVASFCAKSGIDFKLWDDEKYLIHDRDTGITHLNDLPDVFTTYR- 179 Query: 164 ALIQNLVQADLRSLPVPAIRLTGPVTPSNIP----------------------------- 194 I+ L + ++LPVP ++ Sbjct: 180 KQIEPLREKARKTLPVPEKGALPAYPDIDMIPSQQPPFNIPGTCEELVDAVVRPVKNFLK 239 Query: 195 RFFDYPFQAIDPM-FPIGEQNALHILRKF-CKEKVYYYVEQRD-IPAIQGTSQLSPYLSI 251 D+P +A F GE +A + + Y + R+ + +++LS YL+ Sbjct: 240 DLPDFPEKAESSHPFRGGETSAHKRIDHLVLSGGMKSYKDSRNGLLGPDFSTKLSAYLAQ 299 Query: 252 GVLSPRQCWNRLKEEFVDLLIK----------PKSGAFSWLNELIWREFYRHLMAFYPSV 301 G ++ RQ + L K G + EL+WR++ R Y Sbjct: 300 GCVTARQIHHALVAYEDGTGTKYKGADGFGEGDNQGTETVRMELLWRDYMRLCHQKYGDK 359 Query: 302 CM--------GKPFIPWTEKIEWNKD----------------SHLLQAWKQGYTGFPIID 337 + +K W S +L + G TG +ID Sbjct: 360 LFRVEGFNGKHTDYEGEDKKYGWRTANTSIALPGQEPTPEKVSEILARFNAGTTGMGLID 419 Query: 338 AAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAAS 397 A+ R+L G+ NR R ASFL K L +DWR G E++ L+D D++SN WQ+ A Sbjct: 420 ASQRELIHTGYTSNRTRQNVASFLAKHLEIDWRYGAEWYEMLLVDYDVSSNWANWQYVAG 479 Query: 398 TGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNV 435 GND RIFNP Q +D GT++R W+PE+ Sbjct: 480 VGNDPRGAARIFNPVKQAFDYDKDGTYVRTWVPEVAKF 517 >gi|226494726|ref|NP_001146620.1| hypothetical protein LOC100280217 [Zea mays] gi|219888051|gb|ACL54400.1| unknown [Zea mays] Length = 421 Score = 226 bits (577), Expect = 5e-57, Method: Composition-based stats. Identities = 97/415 (23%), Positives = 164/415 (39%), Gaps = 28/415 (6%) Query: 1 MKATTAMSVHLVWLRNDLRITDNKAL----YAACHNSDAKVIAVFIATPEQWRQHGISA- 55 M+A TA + ++W R LR+ DN AL + A++ VF+ P R ++A Sbjct: 1 MEAATAATAAMMWFRKGLRVHDNPALDAARRHGAGAASARLYPVFVLDPRYLRPDAVAAS 60 Query: 56 --------RQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLF 107 + F+ SL + + + + DD + + + + KL Sbjct: 61 PGSARAGVARIRFLLESLSDLDA--RLRRLGSRLLLLRARDDVADAVCAALKDWNIGKLC 118 Query: 108 YNRQYEINEVRRDKLLEK-RLQHRVICKSFDDSVLLPPGSILNHAL-QMYKVYTPFRKAL 165 + E + RDK + L + + L P I+ + Y F Sbjct: 119 FESDTEPYALARDKKVTDFALASGIEVLTPVSHTLFDPEEIIKKNGGRPPLTYQSFVSIA 178 Query: 166 IQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAID----PMFPIGEQNALHILRK 221 + A +P + TG +P + + I P F GE AL +++ Sbjct: 179 GEPPAPAMEEYSELPPLGDTGEYELLPVPTVEELGYGDISQEEIPPFHGGETEALRRMKE 238 Query: 222 FCKEKVY--YYVEQRDIPAI---QGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKS 276 + K + + + + P+ T+ LSPYL G LS R ++ +++ + K Sbjct: 239 SLQNKEWVAKFEKPKGDPSAFVKPSTTVLSPYLKFGCLSSRYFYHCIQDVHRSVRNHTKP 298 Query: 277 GAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPII 336 S +L+WR+F+ + P+ K ++I W+++ L AW+ G TG+P I Sbjct: 299 -PVSLTGQLLWRDFFYTVSYGTPNFDRMKG-NKICKQIPWSENEDLFVAWRDGQTGYPWI 356 Query: 337 DAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGG 391 DA M QL GWMH+ R A FL + + GE L+ L NGG Sbjct: 357 DAIMIQLRNWGWMHHLARHSVACFLTRGDMCCRCEGESSSRLHPLNSHLHPLNGG 411 >gi|302918988|ref|XP_003052768.1| hypothetical protein NECHADRAFT_22205 [Nectria haematococca mpVI 77-13-4] gi|256733708|gb|EEU47055.1| hypothetical protein NECHADRAFT_22205 [Nectria haematococca mpVI 77-13-4] Length = 640 Score = 226 bits (576), Expect = 7e-57, Method: Composition-based stats. Identities = 112/508 (22%), Positives = 178/508 (35%), Gaps = 90/508 (17%) Query: 11 LVWLRNDLRITDNKALYAAC--HNSDAKVIAVFIATPEQWRQHGI--------------- 53 + LR DLR TDN L+ + ++ V++ P Q G Sbjct: 8 VYLLRRDLRATDNPILHHLATADHGFTHLLPVYVLPPHQIEVSGFLTENQKSPYPKALSQ 67 Query: 54 -------SARQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCL-QQRVTK 105 ++ F S+ ++ SL G S D + + + V Sbjct: 68 VGRFWRCGPHRAKFTAESVWDLKDSLEDLGSGLVLRIGSFSDVVRQLIQALNDNHHSVDA 127 Query: 106 LFYNRQYEINEVRRDKLLEKRLQHR-VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKA 164 ++ EV + + V K + D I ++ ++ V+T +RK Sbjct: 128 VWMTEDVSSEEVDDQDAVSAVCSEKSVGFKLWRDDKYF----IDDNPKELPDVFTSYRKT 183 Query: 165 LIQNLVQADLRSLPVPAI-----------RLTGPVTPSNIPRFFD--------------- 198 + L + RSLP P P + F+ Sbjct: 184 -QEPLRERPRRSLPRPQAGSLPPLPPWTPPQDAPFQVPDTYEEFERRLLQPIDYMLANPP 242 Query: 199 -YPFQAIDPM-FPIGEQNALHILRKFCK-EKVYYYVEQRD-IPAIQGTSQLSPYLSIGVL 254 P A F GE A LR + + Y E R+ + +++LS YL++G + Sbjct: 243 VLPQDAKSAHPFDGGESFAWERLRHLIRTGGMCTYQETRNGLLGKDYSTKLSGYLALGCI 302 Query: 255 SPRQCWNRLKE----------EFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304 S R L + G + EL+WR++ R + + Sbjct: 303 SARSIHEELLKLEDGTDQAYARARGFDRGENEGTKAVRFELLWRDYMRLCTKKFGAQLFR 362 Query: 305 ---------------KPFIPWTEKIEWNKDSHLLQAWK----QGYTGFPIIDAAMRQLNT 345 K T I+ + + +G TG IDA+ R+L Sbjct: 363 VSGFKGATGQYEKKWKTADKKTAAIDQDPSPEEVGTIIDRFLEGTTGMGFIDASQRELYH 422 Query: 346 IGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPY 405 G+ NR R ASF K L +DWR G E++ L+D D++SN WQ+ A GND Sbjct: 423 TGYTSNRARQNVASFFSKHLGIDWRYGAEWYEMMLVDYDVSSNWANWQYVAGVGNDPRGD 482 Query: 406 FRIFNPTIQGKRFDPQGTFIRHWLPELN 433 RIFNP Q +D G ++R W+PE+ Sbjct: 483 ARIFNPVKQAFDYDNNGAYVRTWVPEVK 510 >gi|115727477|ref|XP_783613.2| PREDICTED: similar to cryptochrome dash [Strongylocentrotus purpuratus] gi|115935378|ref|XP_001186661.1| PREDICTED: similar to cryptochrome dash [Strongylocentrotus purpuratus] Length = 463 Score = 226 bits (576), Expect = 7e-57, Method: Composition-based stats. Identities = 95/437 (21%), Positives = 163/437 (37%), Gaps = 65/437 (14%) Query: 6 AMSVHLVWLRNDLRITDNKALYAA------------------------------------ 29 M + + LRNDLR DN+ L+ A Sbjct: 4 RMKIVICLLRNDLRYRDNEVLFWAHKNATNVIPLYCFDPRHYKGTHQFGFPKTGPHRLKF 63 Query: 30 --------CHNSDAKVIAVFIATP------EQWRQHGISARQSHFIYASLLQVQKSLSQK 75 H + VI ++ P Q+ + F+ S+ ++ +L Sbjct: 64 LLESVLFWAHKNATNVIPLYCFDPRHYKGTHQFGFPKTGPHRLKFLLESVRDLRTTLQSV 123 Query: 76 GIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH-RVICK 134 G + +D + L + V + + E+ + L + V K Sbjct: 124 GSGLVVRSGNP-EDVVPQLIQQFGEGEVAAVALQEEATREELDVEAGLHQSCSKLGVQVK 182 Query: 135 SFDDSVLLPPGSIL-NHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPSNI 193 F S L + H ++ VYT FRK + ++P P L V +I Sbjct: 183 KFWGSTLYHREDVPFRHLAEVPNVYTEFRKKVENRSHVRPPINMPKPLKGLPQGVEEGDI 242 Query: 194 PRFFDYPFQAIDPM------FPIGEQNALHILRKFCK--EKVYYYVEQRD-IPAIQGTSQ 244 P F + + F GE L + + + + Y E R+ + + +++ Sbjct: 243 PVFSSFGLKDPGSDSRTAFPFQGGETTGLARIEDYFWKSDCIAKYKETRNGLIGSEYSTK 302 Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304 + +L+ G +SPRQ +K + + + ELIWR++++ + + Sbjct: 303 FAAWLAHGCVSPRQIHAEVKRYEKERT--ENQSTYWVIFELIWRDYFKFVALKFGDKMFY 360 Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364 + K WNK+ AW +G TG P +DA +R++ G+M NR R ASFL KD Sbjct: 361 LSGLLGVHK-PWNKNKQWFDAWCKGQTGVPFVDANIREMAATGFMSNRGRQNVASFLTKD 419 Query: 365 LLVDWRIGEEYFMSQLL 381 L++DWR+G E+F L Sbjct: 420 LVLDWRLGAEWFEQMLY 436 >gi|253998728|ref|YP_003050791.1| cryptochrome, DASH family [Methylovorus sp. SIP3-4] gi|253985407|gb|ACT50264.1| cryptochrome, DASH family [Methylovorus sp. SIP3-4] Length = 454 Score = 226 bits (575), Expect = 1e-56, Method: Composition-based stats. Identities = 111/458 (24%), Positives = 182/458 (39%), Gaps = 42/458 (9%) Query: 1 MKATTAMSVH-LVWLRNDLRITDN---KALYAACHNSDAKVIAVFIATPEQ-----WRQH 51 M A A+ + W R DLR+ D A ++ VF+ P + W Sbjct: 5 MSAQHAVPPGVIFWFRRDLRLHDQFALAAAIQHAQQQGGWLLPVFVHDPAESGLTRWGFA 64 Query: 52 GISARQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQ 111 +S + ++ +++ + L G + D + + + V Sbjct: 65 RMSPHRRAWLASAVDALAGQLRALGSDLVPLHGDSVDTLVRLVRALGNPLLV-------C 117 Query: 112 YEINEVRRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQ 171 EI ++ L V ++ S L+ ++ + +T FR AL + VQ Sbjct: 118 DEIAAPEEQAVVAALLAAGVSVQTIWQSSLVAAENLPFDPQAVPDTFTTFRHALERAHVQ 177 Query: 172 --------ADLRSLPVPAIRLTGPVT-----PSNIPRFFDYPFQAID------PMFPIGE 212 L LP A+ P + +P+ A F E Sbjct: 178 AARPLPSIKQLPPLPSHALLNAIPSEVASDGTDHAMACEPWPYDARSAFPLGSSGFDGSE 237 Query: 213 QNALHILRKFCKEK-VYYYVEQRD-IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDL 270 Q AL L+++C+ + + Y R+ + + +S+ SP+L+ G LS RQ W ++ + Sbjct: 238 QAALQHLQQYCQRRLPHSYKSTRNGLIGVDYSSKWSPWLATGALSARQAWAAIQA--FEA 295 Query: 271 LIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGY 330 ++ EL+WR+ +R L + E + D W +G Sbjct: 296 EHGANESSYWLWFELLWRDHFRWLHFKHGKRLYRA--RGLGEAHVPSHDPDHFARWCRGE 353 Query: 331 TGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNG 390 TG P IDA MR+L G++ NR+R AS+L+ DL DWR G +F SQLLD D+ SN G Sbjct: 354 TGQPFIDAGMRELAATGYLSNRMRQNVASYLIHDLGCDWRAGAAWFESQLLDYDVYSNQG 413 Query: 391 GWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHW 428 W + + G D R FNP Q + +D G++ W Sbjct: 414 NWLYLSGRGTDPRQGRR-FNPDKQAQDYDADGSYRALW 450 >gi|218709609|ref|YP_002417230.1| deoxyribodipyrimidine photolyase [Vibrio splendidus LGP32] gi|218322628|emb|CAV18793.1| deoxyribodipyrimidine photolyase [Vibrio splendidus LGP32] Length = 470 Score = 225 bits (573), Expect = 2e-56, Method: Composition-based stats. Identities = 112/457 (24%), Positives = 186/457 (40%), Gaps = 39/457 (8%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFI------ATPEQWRQHGISARQSHF 60 + L +DLRI DN+ L+ A + D K+I V + + + ++ A + F Sbjct: 2 KKIGLYLFTSDLRINDNQLLHCAAQSVD-KLIFVIVEPTLVRFSADLAQEQSYGAHRQTF 60 Query: 61 IYASL--LQVQKSLSQKGIVFQYHQCSNF--DDSIEWLDSYCLQQRVTKLFYNRQYEINE 116 + S+ L++ +L + G ++ D + + L Q VT F N +E Sbjct: 61 VSQSIDNLELNLNLVRLGQQLVVIHSNHLEPDAAEQTLSQIIATQHVTHFFANAHCGYDE 120 Query: 117 VRRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRS 176 + L+ R + C S L + ++ +T FRK + V Sbjct: 121 RQLIHSLQSRHPDLITCLPHH-STLFDSHEMPFELSKVPSSFTKFRKLVEHLDVNGGETV 179 Query: 177 LPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFP----IGEQNALHILR-KFCKEKVYYYV 231 + +T +TP++ + ++ GE L L F + Y Sbjct: 180 IAHLPPPVTPTLTPAHTTAIPIFSSPNVERAVTNDYLGGEDAGLAHLDNYFAHDYALNYK 239 Query: 232 EQRD-IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREF 290 + R+ I+ +++ SP+L++G +SP+ LK+ ++ + EL+WRE+ Sbjct: 240 QTRNAFDGIENSTKFSPWLALGCVSPKTICRHLKQFEIE--HGSNDSTYWIYFELLWREY 297 Query: 291 YRH-LMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWM 349 + ++ PS+ + WK G T +PI+DA MRQLN G+M Sbjct: 298 FYWKCLSQGPSLFGNFSDKKLYPPNSSGTSNLNFAKWKSGNTNYPIVDACMRQLNETGYM 357 Query: 350 HNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVP----- 404 NR R + AS L+ +L +DWR G YF SQL+D D+ASN G W + A N V Sbjct: 358 SNRGRQLAASCLIYELGIDWRHGAAYFESQLIDYDVASNWGNWAYIAGALNSQVNTQDNK 417 Query: 405 -------------YFRIFNPTIQGKRFDPQGTFIRHW 428 R F+ Q +DP FI W Sbjct: 418 QNDAKQPKPKTKPKSRHFDLGKQTNMYDPDHAFINKW 454 >gi|319639589|ref|ZP_07994336.1| deoxyribodopyrimidine photolyase [Neisseria mucosa C102] gi|317399160|gb|EFV79834.1| deoxyribodopyrimidine photolyase [Neisseria mucosa C102] Length = 413 Score = 224 bits (572), Expect = 2e-56, Method: Composition-based stats. Identities = 113/451 (25%), Positives = 180/451 (39%), Gaps = 51/451 (11%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 LVW R +LR+ DN AL AA S + V++ Q + RQS F Y + ++ Sbjct: 9 LVWFRRNLRLHDNAALNAAVA-SGLPIACVWV---NQRPSENHNPRQSLFHYQAAQELHT 64 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130 L+ I E L + + Y E+R+D LL L Sbjct: 65 RLAAHHIPLYAVASD------EDLLPLAATLHAHTIITDEAYTEAEIRQDNLLWHNLDRA 118 Query: 131 VIC-KSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189 I + +D +L +++ Y +T +++A +Q + +P T Sbjct: 119 GIALQHANDRGILAKAPLMDANGLPYTDFTAYKQAWLQAYSEQRPSETELPVQ------T 172 Query: 190 PSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYL 249 N+P F + + GE AL F K+ + +Y ++ PA + TS L+ YL Sbjct: 173 GQNVPLFPAHTGAVLPAYQQGGETAALTQWHAF-KQNLVHYPITQNFPARKNTSLLNAYL 231 Query: 250 SIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIP 309 S G +SPR F WL++LI+R++ L Sbjct: 232 SAGCISPRLLAAESLANRH----------FEWLDKLIFRDYCYQLAYH------------ 269 Query: 310 WTEKIEWNKDSHLLQ-AWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVD 368 ++ D+ ++ W+ G TG P+IDA++R L G +H L+ + A + L +D Sbjct: 270 --RRLPETTDAAPVREYWRNGRTGVPVIDASIRSLEATGHLHPVLQQLCAHYFCHALNLD 327 Query: 369 WRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHW 428 G + S D A N W AA R + DP G++IR + Sbjct: 328 PNQGIAWTASVQTGTDPALNQANWHLAAQDTATVRYAHR-------SHQIDPDGSYIRSY 380 Query: 429 LPELNNVPTQYIHAPHSWLDKNDLSLNYPLP 459 LPEL ++P+ IH P + D D + YP P Sbjct: 381 LPELAHLPSTLIHTPWAAADDID-THGYPFP 410 >gi|223944515|gb|ACN26341.1| unknown [Zea mays] Length = 470 Score = 224 bits (571), Expect = 2e-56, Method: Composition-based stats. Identities = 89/266 (33%), Positives = 136/266 (51%), Gaps = 14/266 (5%) Query: 229 YYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEF----VDLLIKPKSGAFSWLNE 284 Y R TS LSPYL G LS R+ +++++ + D + +L Sbjct: 2 DYSVNRKKADSASTSLLSPYLHFGELSVRKVFHQVRMKQLMWSNDGNHAGEESCTLFLRS 61 Query: 285 LIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLN 344 + RE+ R+L +P KP + W + + W+QG TG+P++DA MR+L Sbjct: 62 IGLREYSRYLTFNHP-CSHEKPLLSHLRFFPWVVNEVYFKVWRQGRTGYPLVDAGMRELW 120 Query: 345 TIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVP 404 GW+H+R+R++ +SF VK L + WR G +YF LLD DL S+ GWQ+ + + D Sbjct: 121 ATGWVHDRIRVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGSLPDGRE 180 Query: 405 YFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDK------NDLSLNYPL 458 RI NP +G +FDP G ++R WLPEL +PT++IH P + +L NYP Sbjct: 181 LDRIDNPQFEGYKFDPHGEYVRRWLPELARLPTEWIHHPWDAPESVLQAAGVELGSNYPR 240 Query: 459 PIVDHKKACHH---TLNQYYAAKKQS 481 PIV+ A L++ + + S Sbjct: 241 PIVELDAANSRLQDALSEMWELEAAS 266 >gi|300771338|ref|ZP_07081214.1| cryptochrome DASH [Sphingobacterium spiritivorum ATCC 33861] gi|300762008|gb|EFK58828.1| cryptochrome DASH [Sphingobacterium spiritivorum ATCC 33861] Length = 425 Score = 223 bits (569), Expect = 4e-56, Method: Composition-based stats. Identities = 92/413 (22%), Positives = 169/413 (40%), Gaps = 34/413 (8%) Query: 8 SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISAR-----QSHFIY 62 V L+W RNDLR DN+ L+ S +I V+ P + + R ++ FI Sbjct: 4 KVTLIWFRNDLRFHDNEILFETVSKSPI-IIPVYCFDPRYFSKKSSGHRKTGVHRARFIL 62 Query: 63 ASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKL 122 ++ ++++ G S E + + V ++F++R+ E + Sbjct: 63 DAVRELKEKFVAMGCDL----MSFVGYPEEIIPRLAAKYEVNEVFHHREVASRETIISEN 118 Query: 123 LEKRL-QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPA 181 +E L + ++ K F L + + + F+K + + + P P Sbjct: 119 VETALWKLKINLKHFIGHTLYHKEDLPFPIRDIPNDFMVFKKKIERESTVR--QPFPTPE 176 Query: 182 IRLTGP-VTPSNIPRFFDYPFQAIDP--------MFPIGEQNALHILRKFCKEKVYYYVE 232 + +T P + + IP + + + GE AL + + + + E Sbjct: 177 VMVTHPHLEKTTIPTLEELGYTTEEIQTANNNPIHLRGGEDEALKKVEEVLSGQ---FNE 233 Query: 233 QRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYR 292 Q D LSPY++ G LSP ++++K+ L+ K +L+WR+++R Sbjct: 234 QLDYM------MLSPYIAAGALSPIYLYHKIKDA---KLVLNKKRTEKLTAQLLWRDYFR 284 Query: 293 HLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNR 352 ++ YP+V K +E + L+ W+ G TG+ ID AM+ L+ G + + Sbjct: 285 FMLKKYPNVFFKKNGTGKSEYSNVETNPEDLKKWQSGQTGYEFIDKAMQFLSQTGNLPSD 344 Query: 353 LRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPY 405 ++ I + F V++ DWR G YF L+D A+ G W A G Sbjct: 345 IKKIVSLFFVQEYQGDWRKGASYFEDMLIDYAPATTYGYWAHYAGVGTSIKNN 397 >gi|227540558|ref|ZP_03970607.1| deoxyribodipyrimidine photolyase [Sphingobacterium spiritivorum ATCC 33300] gi|227239640|gb|EEI89655.1| deoxyribodipyrimidine photolyase [Sphingobacterium spiritivorum ATCC 33300] Length = 425 Score = 222 bits (566), Expect = 9e-56, Method: Composition-based stats. Identities = 94/413 (22%), Positives = 170/413 (41%), Gaps = 34/413 (8%) Query: 8 SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISAR-----QSHFIY 62 V L+W RNDLR DN+ L+ S +I V+ P + + R ++ FI Sbjct: 4 KVTLIWFRNDLRFHDNEILFETVSKSPI-IIPVYCFDPRYFSKKSSGHRKTGVHRARFIL 62 Query: 63 ASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKL 122 ++ ++++ + G S E + + V ++F++R+ E + Sbjct: 63 DAVRELKEKFAAMGCDL----MSFVGYPEEIIPRLAAKYEVNEVFHHREVASRETIISEN 118 Query: 123 LEKRL-QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPA 181 +E L + ++ K F L + + + F+K + + + P P Sbjct: 119 VETALWKLKINLKHFIGHTLYHKEDLPFPIRDIPNDFMVFKKKIERESTVR--QPFPTPE 176 Query: 182 IRLTGP-VTPSNIPRFFDYPFQAIDP--------MFPIGEQNALHILRKFCKEKVYYYVE 232 + +T P + + IP + + A + GE AL + + + + E Sbjct: 177 VMVTHPHLEKTTIPTLEELGYTAEEIQTANNNPIHLRGGEDEALKKVEEVLSGQ---FNE 233 Query: 233 QRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYR 292 Q D LSPY++ G LSP ++++K+ L+ K +L+WR+++R Sbjct: 234 QLDYM------MLSPYIAAGALSPIYLYHKIKDA---KLVLNKKRTEKLTAQLLWRDYFR 284 Query: 293 HLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNR 352 ++ YP+V K E + + L+ W+ G TG ID AM+ L+ G + + Sbjct: 285 FMLKKYPNVFFKKNGTGKNEYSNTDTNPEDLKKWQSGQTGHVFIDKAMQFLSQTGNLPSD 344 Query: 353 LRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPY 405 L+ I + F V++ DWR G YF L+D A+ G W A G Sbjct: 345 LKKIVSLFFVQEYQGDWRKGASYFEDILIDYAPATTYGYWAHYAGVGTSIKNN 397 >gi|241759630|ref|ZP_04757731.1| deoxyribodopyrimidine photolyase [Neisseria flavescens SK114] gi|241320002|gb|EER56383.1| deoxyribodopyrimidine photolyase [Neisseria flavescens SK114] Length = 411 Score = 222 bits (565), Expect = 1e-55, Method: Composition-based stats. Identities = 109/451 (24%), Positives = 176/451 (39%), Gaps = 51/451 (11%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 LVW R +LR+ DN AL AA S + V++ Q + RQS F Y + ++ Sbjct: 7 LVWFRRNLRLHDNAALNAAVA-SGLPIACVWV---SQRPSENHNPRQSLFHYQAAQELHT 62 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL-QH 129 L+ I E L + + Y E+R+D L + Sbjct: 63 RLATHHIPLYVVASD------EDLLPLAAAFNAHTVITDEAYTEAEIRQDNHLWHNFDRA 116 Query: 130 RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189 + + +D +L +++ Y + +++A +Q +P T Sbjct: 117 GITLQHANDRGILAKFPLMDANGLPYTDFAAYKQAWLQAYSGQRPSETELPVQ------T 170 Query: 190 PSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYL 249 N+P F + + GE AL F K+ + +Y ++ PA + TS L+ YL Sbjct: 171 RQNVPLFPAHTGAVLPAYQQGGETAALTQWHAF-KQNLVHYPITQNFPARKNTSLLNAYL 229 Query: 250 SIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIP 309 S G +SPR F WL++LI+R++ L Sbjct: 230 SAGCISPRLLAAEGLANRH----------FEWLDKLIFRDYCYQLAYH------------ 267 Query: 310 WTEKIEWNKDSHLLQ-AWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVD 368 ++ D+ ++ W+ G TG PIIDA++R L G +H L+ + A + L D Sbjct: 268 --RRLPETTDAAPVREYWRLGQTGVPIIDASIRGLEATGHLHPVLQQLCAHYFCHALNFD 325 Query: 369 WRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHW 428 G + S D A N W AA R + DP G++IR + Sbjct: 326 PNQGIAWAASVQTGTDPALNQANWHLAAQDTATVRYAHR-------SHQIDPDGSYIRSY 378 Query: 429 LPELNNVPTQYIHAPHSWLDKNDLSLNYPLP 459 +PEL ++P+ IH P + D D + YP P Sbjct: 379 VPELAHLPSTLIHTPWAAADDID-THGYPFP 408 >gi|170047814|ref|XP_001851403.1| DNA photolyase [Culex quinquefasciatus] gi|205694137|sp|B0WRR9|CRY1_CULQU RecName: Full=Cryptochrome-1 gi|167870095|gb|EDS33478.1| DNA photolyase [Culex quinquefasciatus] Length = 499 Score = 222 bits (565), Expect = 1e-55, Method: Composition-based stats. Identities = 86/311 (27%), Positives = 142/311 (45%), Gaps = 19/311 (6%) Query: 190 PSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKE-----KVYYYVEQRDIPAIQGT-S 243 P + +++ + GE AL +L + K+ + YY+ + P S Sbjct: 158 PEDFGIYYEGNADIARQRWTGGEAKALELLGRRLKQEEEAFREGYYLPTQARPDFLAPPS 217 Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPK---SGAFSWLNELIWREFYRHLMAFYPS 300 +S L G LS R + + + F + + G +LIWRE++ + P Sbjct: 218 SMSAALRFGCLSVRMFYWCVHDLFARVQANNQLKHPGGHHITGQLIWREYFYTMSVHNPH 277 Query: 301 VCMGKPFIPWTEKIEW-NKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITAS 359 + + P I W L WK+G TGFP+IDAAMRQL GW+H+ LR ITA+ Sbjct: 278 YAVME-LNPICLNIPWYEAKDDSLDRWKEGRTGFPLIDAAMRQLMAEGWLHHILRNITAT 336 Query: 360 FLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDS-VPYFRIFNPTIQGKR 417 FL + L + W G ++F+ LLD D + G W W +S+ + + +P +R Sbjct: 337 FLTRGGLWISWEAGVQHFLKYLLDADWSVCAGNWMWVSSSAFEKLLDSSSCTSPVALARR 396 Query: 418 FDPQGTFIRHWLPELNNVPTQYIHAPHSWLDK------NDLSLNYPLPIVDHKKACHHTL 471 DP+G +++ +LPEL P Y+H P + + +YP P+V+ + Sbjct: 397 LDPKGEYVKRYLPELEKFPALYVHEPWKAPPELQEQYGCVIGKDYPAPMVNLAEVNKCNA 456 Query: 472 NQYYAAKKQSL 482 N+ A +++ L Sbjct: 457 NKMNAIRQKLL 467 >gi|260220872|emb|CBA28873.1| hypothetical protein Csp_A09310 [Curvibacter putative symbiont of Hydra magnipapillata] Length = 468 Score = 220 bits (561), Expect = 4e-55, Method: Composition-based stats. Identities = 102/462 (22%), Positives = 168/462 (36%), Gaps = 45/462 (9%) Query: 1 MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVI----AVFIATPEQWRQHGISAR 56 M + + W R+D+R+ DN A AC + V A W G+S Sbjct: 14 MSLVDVGAPVIYWFRSDMRLQDNPAWTRACAMGRPVLAVTFAPVLSAREAAWGIPGLSPS 73 Query: 57 QSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINE 116 + + A++ ++++ L G+ + + E L L E Sbjct: 74 RKAWWAATVQELRRELDALGVSLLVLRGGSM----EALVRLFEASGAVALVCEEIAAPYE 129 Query: 117 VRRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRS 176 L ++ S L + + V+T FR + + V Sbjct: 130 R---AQLSSLRASGIVVHSVWQGTLFKAEDLPFSVTDLPGVFTRFRNEVERAKVPFR-TP 185 Query: 177 LPVPAIRLTGPVTPSNIPRFFDY----------PFQAIDPMFPIGEQNA----------- 215 LP P + + D+ + G A Sbjct: 186 LPAPVNVTGYDLACDAVSFAEDFVDGAAAGKFVADPRSAFQWRSGSSGANDEVLHLDEVL 245 Query: 216 ------LHILRKFCK-EKVYYYVEQRD-IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEF 267 L+ + + +V Y R+ + + +S+ SP+L++G +S + LK Sbjct: 246 AGSGGGHAYLQHYLESGRVAQYKATRNGLTGMAYSSKWSPWLALGAVSAPELMAALKAHE 305 Query: 268 VDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG-KPFIPWTEKIEWNKDSHLLQAW 326 + G++ EL+WR+++R L Y + K + + W Sbjct: 306 REHGT--TDGSYWLWFELLWRDYFRWLHLQYGAGLYRPKGLLEAAKSERVPHHRRSFTLW 363 Query: 327 KQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLA 386 QG TG ++DA MR+L G++ NR+R + ASFL+ +L DWR G +F SQLLD D+ Sbjct: 364 TQGRTGCDLVDAGMRELACSGYLSNRMRQVVASFLIYELGCDWRAGAAWFESQLLDFDVY 423 Query: 387 SNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHW 428 SN G W + A G D R FN Q DP G + W Sbjct: 424 SNQGNWLYIAGLGTDPRGGRR-FNVAKQTADHDPDGAYRALW 464 >gi|223997602|ref|XP_002288474.1| predicted protein [Thalassiosira pseudonana CCMP1335] gi|220975582|gb|EED93910.1| predicted protein [Thalassiosira pseudonana CCMP1335] Length = 408 Score = 220 bits (561), Expect = 4e-55, Method: Composition-based stats. Identities = 93/405 (22%), Positives = 156/405 (38%), Gaps = 36/405 (8%) Query: 94 LDSYCLQQRVTKLFYNRQYEI-NEVRRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHAL 152 L + Q+ + ++ + + RDK + + + I D + Sbjct: 4 LRTIHKQRPINQILCHLETGHLKSFARDKAVRRWCRSSNIPIRELDQT-----GVTRCLK 58 Query: 153 QMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGE 212 F+K + Q + + + P+ P++I + + GE Sbjct: 59 DRDDFSVNFKKFINQPMWSTPSQH------QCRSPMKPTDIQQIPEEHKGDRVERQYGGE 112 Query: 213 QNALHILRKFCKEKVYYYVEQRDIPAIQGTS--QLSPYLSIGVLSPRQCWNRLKEEFVDL 270 A +L F + Y P TS +LSPYL+ G +S R + + +L Sbjct: 113 TKAFGMLHSFLTHRGANYSAGISSPNTSWTSCSRLSPYLTWGHISLRYVIVTTQRKQEEL 172 Query: 271 LIKPKS-------------GAFSWLNELIWREFYRHLMAFYPSVCMGKPFIP--WTEKIE 315 K S+ + + WR + + PS+ + + + Sbjct: 173 REHRKRNKSRGEAPSLWLRSLASFQSRMHWRSHFIQKLESQPSLEVQDQCLAFSHLRRQP 232 Query: 316 WNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEY 375 + + ++W +G TG+P +DA MR L GW++ R R + SF +L +DW+ Y Sbjct: 233 GDFNESYYESWCEGKTGYPYVDACMRCLRHCGWINFRARAMLVSFATYNLWLDWKRIASY 292 Query: 376 FMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNV 435 LD + + Q +G + R++N T QGK DP G FIR +PEL NV Sbjct: 293 LARLFLDYEPGIHYPQLQMQ--SGVTGINAMRVYNVTKQGKDQDPNGVFIRKHVPELRNV 350 Query: 436 PTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQ 480 P +YIH P + YP PIVD K A ++ +KQ Sbjct: 351 PVEYIHEPFGMP-----CVYYPAPIVDEKAAAKAAKDKLSGVRKQ 390 >gi|313217172|emb|CBY38333.1| unnamed protein product [Oikopleura dioica] Length = 571 Score = 220 bits (560), Expect = 5e-55, Method: Composition-based stats. Identities = 107/484 (22%), Positives = 178/484 (36%), Gaps = 39/484 (8%) Query: 4 TTAMSVHLVWLRND-LRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIY 62 ++ V L W LR+ DN L AA N A V + + S+ + FI Sbjct: 68 SSPEHVTLFWFTEAALRLNDNAGLKAAMKNCKA-VRFCYFLDERFINE---SSPRWKFIK 123 Query: 63 ASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEI-NEVRRDK 121 ++L + + L G E L V +L ++ + RRD+ Sbjct: 124 SALSDLDEQLKNLGSRLHVLSGQPS----ERLPQLFADWNVVRLGFSAHPGCTDMRRRDR 179 Query: 122 LLEK-RLQHRVICKSFDD-SVLLPPGSILNHALQMYKVYTP-FRKALIQNLVQADLRSLP 178 + L+H V D L P I+ + M + P F Q ++P Sbjct: 180 AIVSLALRHGVEVVYRDAPQCLYSPRDIIKASGGMPPLTFPSFVGVASQLPEPEKPINVP 239 Query: 179 VPAIRLTG-PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIP 237 I + P+ + +D + GE A + + R+ Sbjct: 240 ESDIVMCSVSEDHDEAPQNEILGKKDLDFPWAGGETEARARFMSALRHWL----INRETQ 295 Query: 238 AIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAF 297 + ++PY+ G LS RQ ++ + + + I+ + + R+F +L Sbjct: 296 STPDLRAVTPYIVQGCLSVRQVYHDVNRVYEE--IQGEKATLKLHFAALHRDFLYNLAVV 353 Query: 298 YPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMIT 357 P + ++ D ++ W +G TGFP +DA MRQ T GW+ LR Sbjct: 354 --------PNDDLNLDVSFDCDEARIRTWLEGNTGFPWVDAVMRQFRTEGWVAPTLRQAV 405 Query: 358 ASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKR 417 FL + +L FMS+ DL G WA+ TG P + Sbjct: 406 LWFLTRGVLWQTPEIAVQFMSEFCLLDLPLAKGYAAWASGTGAWCENDVAHKCP-----K 460 Query: 418 FDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477 DP +IR W+PE+ N+ + IH P + + Y IV HK + + ++Y+ Sbjct: 461 VDPN--YIRQWVPEVANLTDEQIHEPWTTQTPTE----YVSLIVQHKISHRRSESKYHET 514 Query: 478 KKQS 481 K+S Sbjct: 515 LKRS 518 >gi|218662587|ref|ZP_03518517.1| Deoxyribodipyrimidine photo-lyase [Rhizobium etli IE4771] Length = 208 Score = 219 bits (557), Expect = 1e-54, Method: Composition-based stats. Identities = 93/204 (45%), Positives = 125/204 (61%), Gaps = 7/204 (3%) Query: 284 ELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQL 343 E+ WREF HL+ +P + + + EW D +AW++G TG+PI+DA MRQL Sbjct: 3 EIAWREFSYHLLYHFPRLASAN-WNERFDGFEWRNDDDEFRAWRRGMTGYPIVDAGMRQL 61 Query: 344 NTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSV 403 GWMHNR+RMI ASFLVKDLL+DWR GE +F L+D D A+N WQW A +G D+ Sbjct: 62 RRHGWMHNRVRMIAASFLVKDLLIDWRCGEAWFRDTLVDADPANNAASWQWVAGSGADAS 121 Query: 404 PYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIH----APHSWLDKNDL--SLNYP 457 P+FRIFNP +QG+ FDP+G ++ ++PEL + +YIH AP LD + YP Sbjct: 122 PFFRIFNPVLQGETFDPEGDYVGAYVPELRRLGPKYIHRPFEAPKRVLDAAGIILGHTYP 181 Query: 458 LPIVDHKKACHHTLNQYYAAKKQS 481 P+VDH A + L Y A + S Sbjct: 182 APMVDHGSARNRALAAYDAIRAAS 205 >gi|77964006|gb|ABB13344.1| cryptochrome 1b [Hordeum vulgare subsp. vulgare] Length = 462 Score = 217 bits (554), Expect = 2e-54, Method: Composition-based stats. Identities = 89/254 (35%), Positives = 135/254 (53%), Gaps = 14/254 (5%) Query: 241 GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFS----WLNELIWREFYRHLMA 296 TS LSPYL G LS R+ ++ ++ + + + A +L + RE+ R+L Sbjct: 1 NTSLLSPYLHFGELSVRKVFHLVRMKQLVWSNEGNHAAEESCTLFLRSVGLREYSRYLCF 60 Query: 297 FYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMI 356 +P KP + W D + W+QG TG+P++DA MR+L GW+H+R+R++ Sbjct: 61 NHP-CSHEKPLLAHLRFFPWVVDESTFKFWRQGRTGYPLVDAGMRELWATGWLHDRIRVV 119 Query: 357 TASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGK 416 +SF VK L + WR G +YF LLD DL S+ GWQ+ + + DS I NP ++G Sbjct: 120 VSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGSLPDSRELDHIDNPQLEGY 179 Query: 417 RFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDK------NDLSLNYPLPIVDHKKAC--- 467 +FDP G ++R WLPEL +PT++IH P +L NYPLPIV+ A Sbjct: 180 KFDPHGEYVRRWLPELARLPTEWIHHPWDAPASVLQAAGVELGSNYPLPIVELDTAQVRL 239 Query: 468 HHTLNQYYAAKKQS 481 L++ + + S Sbjct: 240 QEALSEMWQLEAAS 253 >gi|237654599|ref|YP_002890913.1| cryptochrome, DASH family [Thauera sp. MZ1T] gi|237625846|gb|ACR02536.1| cryptochrome, DASH family [Thauera sp. MZ1T] Length = 515 Score = 216 bits (549), Expect = 8e-54, Method: Composition-based stats. Identities = 119/482 (24%), Positives = 187/482 (38%), Gaps = 74/482 (15%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPE-----QWRQHGISARQSHFIYA 63 V + W RNDLR+ DN AL AC ++ +++ V+ P +W + F+ A Sbjct: 5 VVIFWFRNDLRVGDNLALVEACASA-GRLLPVYCHDPSADAPTRWGFVRRGPHRRAFLEA 63 Query: 64 SLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLL 123 +L + +L +G + ++ V + I + L Sbjct: 64 ALGDLDAALRARGSALLQLNGAPRAVLPALAEAVGAAVVVCE-------AIAAPEEEDEL 116 Query: 124 EKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQ-----------A 172 + K+ S LL P ++ A ++ KV+T FR+A+ +Q Sbjct: 117 AALRAAGLKVKAIWQSTLLDPAALPFAAARLPKVFTAFRQAVESAGLQPPAPLPAPRTLP 176 Query: 173 DLRSLPVPAIRLTGP--------------------------VTPSNIPRFFDYP------ 200 L P R P N Y Sbjct: 177 PWPPLDRPTRRSDASRDLRAGRSPGVAGRDPCAGRSPGVERAEPGNRDLRRSYGGSCGAA 236 Query: 201 ------------FQAIDPMFPIGEQNALHIL-RKFCKEKVYYYVEQRDIP-AIQGTSQLS 246 F P F GE+ AL L R F ++ +Y R+ + +S+ S Sbjct: 237 DALTVEIGEQASFPWWQPAFAGGERAALAHLARYFAGDRPRHYKATRNGLSGVDFSSKFS 296 Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP 306 P+L+ G LS R L+ ++ P G++ EL+WR+++R L+ + + Sbjct: 297 PWLAQGALSARVALAALRRHEIEQG--PSDGSYWLWFELLWRDYFR-LLHLQQGRRLYRA 353 Query: 307 FIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLL 366 + D+ AW+ G TG P IDA MR+L GW+ NR+R I AS+L+ DL Sbjct: 354 RGLNEGAAQPAHDAAAFAAWRVGGTGHPFIDAGMRELAATGWLSNRMRQIVASYLIHDLG 413 Query: 367 VDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIR 426 DWR G +F +QL+D D+ SN G W + A G D R F+P Q +D G + Sbjct: 414 CDWRAGAAWFEAQLVDYDVYSNQGNWLYIAGRGTDPRGGRR-FDPDRQAAMYDADGAYRA 472 Query: 427 HW 428 W Sbjct: 473 LW 474 >gi|195148599|ref|XP_002015258.1| GL19603 [Drosophila persimilis] gi|194107211|gb|EDW29254.1| GL19603 [Drosophila persimilis] Length = 303 Score = 215 bits (548), Expect = 1e-53, Method: Composition-based stats. Identities = 85/247 (34%), Positives = 121/247 (48%), Gaps = 10/247 (4%) Query: 240 QGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYP 299 T+ LSPYL G LS R +++ + + K S + +L+WREFY + A P Sbjct: 26 PSTTVLSPYLKFGCLSAR-IFHQQLKAILKRQSKHSQPPVSLIGQLLWREFYYTVAAAEP 84 Query: 300 SVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITAS 359 + + +I W + + L+AW G TG+P IDA MRQL GW+H+ R A Sbjct: 85 NFDRMLG-NVYCLQIPWQEQADHLEAWTHGRTGYPFIDAIMRQLRQEGWIHHLARHAVAC 143 Query: 360 FLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRF 418 FL + DL + W G+ F LLD D A N G W W S YFR+++P GK+ Sbjct: 144 FLTRGDLWISWEAGQRVFEQLLLDQDWALNAGNWMW-LSASAFFHQYFRVYSPVAFGKKT 202 Query: 419 DPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND------LSLNYPLPIVDHKKACHHTLN 472 DPQG +IR ++PEL P I+ P + L ++YP IV H+ + Sbjct: 203 DPQGHYIRKYVPELAKYPNGCIYEPWKATLADQREYGCVLGVDYPHRIVKHELVHKENIK 262 Query: 473 QYYAAKK 479 + AA K Sbjct: 263 RMSAAYK 269 >gi|225076344|ref|ZP_03719543.1| hypothetical protein NEIFLAOT_01388 [Neisseria flavescens NRL30031/H210] gi|224952329|gb|EEG33538.1| hypothetical protein NEIFLAOT_01388 [Neisseria flavescens NRL30031/H210] Length = 428 Score = 215 bits (548), Expect = 1e-53, Method: Composition-based stats. Identities = 109/451 (24%), Positives = 176/451 (39%), Gaps = 51/451 (11%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 LVW R +LR+ DN AL AA S + V++ Q ++RQS F Y + ++ Sbjct: 24 LVWFRRNLRLHDNAALNAAVA-SGLPIACVWV---SQRPSENHNSRQSLFHYQAAQELHT 79 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL-QH 129 L+ I E L + + Y E+R+D L + Sbjct: 80 RLAAHHIPLYVVASD------EDLLPLAAALNAHTVITDEAYTEAEIRQDNHLWHNFDRA 133 Query: 130 RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189 + + +D +L +++ Y + +++A +Q +P T Sbjct: 134 GITLQHANDRGILAKSPLMDANGLPYTDFAAYKQAWLQAYSGQRPSETELPVQ------T 187 Query: 190 PSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYL 249 N+P F + + GE AL F K+ + +Y + PA + TS L+ YL Sbjct: 188 GQNVPLFPAHTGAVLPAYQQGGETAALTQWHAF-KQNLVHYPITQTFPARKNTSLLNAYL 246 Query: 250 SIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIP 309 S G +SPR F WL +LI+R++ L Sbjct: 247 SAGCISPRLLAAEGLANRH----------FEWLEKLIFRDYCYQLAYH------------ 284 Query: 310 WTEKIEWNKDSHLLQ-AWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVD 368 ++ D+ ++ W+ G TG PIIDA++R L G +H L+ + A + L D Sbjct: 285 --RRLPETTDAAPVREYWRHGQTGVPIIDASIRGLEATGHLHPILQQLCAHYFCHALNFD 342 Query: 369 WRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHW 428 G + S D A N W +AA R + DP G++IR + Sbjct: 343 PNQGIAWTASVQTGTDPALNQANWHFAAQDTATVRYAHR-------SHQIDPDGSYIRSY 395 Query: 429 LPELNNVPTQYIHAPHSWLDKNDLSLNYPLP 459 +PEL ++P+ IH P + D D + YP P Sbjct: 396 VPELAHLPSTLIHTPWAAADDID-THGYPFP 425 >gi|110667407|ref|YP_657218.1| deoxyribodipyrimidine photolyase [Haloquadratum walsbyi DSM 16790] gi|109625154|emb|CAJ51573.1| deoxyribodipyrimidine photolyase [Haloquadratum walsbyi DSM 16790] Length = 719 Score = 215 bits (547), Expect = 1e-53, Method: Composition-based stats. Identities = 98/402 (24%), Positives = 159/402 (39%), Gaps = 30/402 (7%) Query: 87 FDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHRVICKSFDDSVLLPPGS 146 + D ++ L S+ + + + L RRD + + S D G Sbjct: 189 YGDPVDIL-SHFVDRGWSILTMETPTSRYGKRRDTRAQSVCGDALRFISGD-------GL 240 Query: 147 ILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDP 206 I + + + L + +LT P + + Sbjct: 241 IRDAEWSRANWKSHITEWLAA---EQHTPEWSGDTTQLTIPTGITPSVVEKTHKINPTKK 297 Query: 207 MFPIG-EQNALHILRKFCKEKVYYYVEQRDIP--AIQGTSQLSPYLSIGVLSPRQCWNRL 263 M P G + A LR F +++ Y P A GTS LSPY + G+LS RQ Sbjct: 298 MVPTGTHRAATTQLRAFV-DQIGSYPSNISAPQDARTGTSGLSPYFNFGLLSIRQV---- 352 Query: 264 KEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEW-NKDSHL 322 ++V+ G + + LIW Y +A + + + P E+ + L Sbjct: 353 -HQYVNNNTPECRGRRMFTSRLIWNCHYNQKLADW-AGWTDRAVNPAFEEFNADRHNPAL 410 Query: 323 LQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLD 382 + AWK G TGFP++DA+MR L GW++ R+R + S L W IG ++F L+D Sbjct: 411 VDAWKHGQTGFPMVDASMRCLRETGWLNFRMRAMCVSIFTHILQQPWWIGADWFHHHLID 470 Query: 383 GDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHA 442 D+ N QW + G P R++NP Q + D G +I W+PEL+++P Q+ Sbjct: 471 SDVGINYT--QWQSQAGLIGKPSQRVYNPRKQVRDHDSDGEWITKWVPELSDLPAQHFPR 528 Query: 443 PHSWLDKND------LSLNYPLPIVDHKKACHHTLNQYYAAK 478 P + +YP P+VD ++Y + Sbjct: 529 PERTPLAVQSECNVIIGDDYPRPVVDFDARRETFWSRYERRR 570 Score = 43.5 bits (101), Expect = 0.084, Method: Composition-based stats. Identities = 12/61 (19%), Positives = 28/61 (45%), Gaps = 2/61 (3%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGIS-ARQSHFIYASLLQVQ 69 +VW R LR D++A A + +F+ P + G++ + F++ ++ + Sbjct: 46 VVWHRKHLRTADHRA-LADAVADADIICPLFVFDPTFYDNDGLACDARIRFLHEAVDSLN 104 Query: 70 K 70 + Sbjct: 105 Q 105 >gi|254468682|ref|ZP_05082088.1| deoxyribodipyrimidine photolyase (photoreactivation) [beta proteobacterium KB13] gi|207087492|gb|EDZ64775.1| deoxyribodipyrimidine photolyase (photoreactivation) [beta proteobacterium KB13] Length = 416 Score = 215 bits (547), Expect = 1e-53, Method: Composition-based stats. Identities = 98/429 (22%), Positives = 180/429 (41%), Gaps = 24/429 (5%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 MS ++ W RN+LRI DN L +S + V+I G ++ F+ +L Sbjct: 1 MSHNIFWFRNNLRIHDNYPLVQCIKDS-TSISFVYIVNRHLRVLDGHENHKNKFLIDALN 59 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 Q++ +LS G + D S Q ++ K++ + E + + + Sbjct: 60 QLKINLSDLGHELYIIEGEPSD----IFSSLAKQYQINKIYCEKIVSPYETDEELSITQT 115 Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 SF DS LL + + + +T FRK + L + Sbjct: 116 -----DVLSFWDSTLLNIDDLDFDVIDLPDTFTTFRKKVE--LKPITATLYEGLTLPKPA 168 Query: 187 PVTPSNIPRFFDYPFQAIDP-----MFPIGEQNALHILRKFCKEKVY-YYVEQRD-IPAI 239 ++ N + ++ + + I E A ++ + +K Y + R+ + Sbjct: 169 NLSNINSYQLPNFDIKYRGSVDFLNHYTICENGAQKYVKDYFSDKKALEYKQTRNELMGN 228 Query: 240 QGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYP 299 +++ S +L+ G++S RQ + LK + + L EL+WR+++R L Y Sbjct: 229 DFSTKFSVWLAHGLISARQIFTSLK--NYEESNGANESTYWILFELLWRDYFRLLHFKYN 286 Query: 300 SVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITAS 359 + + E E ++D+ + ++ T I+A +R+L G++ NR+R I AS Sbjct: 287 RKLYFQFGLKNKEINETSQDN--ISNLEEANTESSFINAGIRELQNSGFLSNRMRQILAS 344 Query: 360 FLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFD 419 F++ ++ +DWRIG ++F L+D D+ SN G W + A G D R FN Q +D Sbjct: 345 FIIFEMKIDWRIGADFFQKYLIDFDIYSNQGNWIYIAGYGTDPRGGRR-FNVEKQKNTYD 403 Query: 420 PQGTFIRHW 428 + W Sbjct: 404 IDNQYEMCW 412 >gi|284799906|ref|ZP_05985171.2| deoxyribodopyrimidine photolyase [Neisseria subflava NJ9703] gi|284796575|gb|EFC51922.1| deoxyribodopyrimidine photolyase [Neisseria subflava NJ9703] Length = 428 Score = 215 bits (547), Expect = 2e-53, Method: Composition-based stats. Identities = 110/451 (24%), Positives = 174/451 (38%), Gaps = 51/451 (11%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 LVW R +LR+ DN AL AA S + V++ Q + RQS F Y + ++ Sbjct: 24 LVWFRRNLRLHDNAALNAAVA-SGLPITCVWV---SQRPSENHNPRQSLFHYQAAQELHT 79 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130 L+ I E L + + Y E+R+D L Sbjct: 80 RLAAHHIPLYVVASD------EDLLPLAAALNAHTVITDEAYTEAEIRQDNHLWHNFDQA 133 Query: 131 VIC-KSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189 I + +D +L +++ Y + +++A +Q +P Sbjct: 134 GIALQHANDRGILAKSPLMDANGLPYTDFAAYKQAWLQAYSGQRPSETKLPVQ------I 187 Query: 190 PSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYL 249 N+P F + + GE AL F K+ + +Y ++ PA + TS L+ YL Sbjct: 188 GQNVPLFPAHTGAVLPAYQQSGETAALTQWHAF-KQNLVHYPITQNFPARKNTSLLNAYL 246 Query: 250 SIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIP 309 S G +SPR F WL++LI+R++ L Sbjct: 247 SAGCISPRLLAAESLANRH----------FEWLDKLIFRDYCYQLAYH------------ 284 Query: 310 WTEKIEWNKDSHLLQ-AWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVD 368 ++ D+ ++ W+ G TG PIIDA++R L G +H L+ + A + L D Sbjct: 285 --RRLPETTDAAPVREYWRHGQTGVPIIDASIRGLEATGHLHPVLQQLCAHYFCHALNFD 342 Query: 369 WRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHW 428 G + S D A N W AA R + DP G++IR + Sbjct: 343 PNQGIAWTASVQTGTDPALNQANWHLAAQDTATVRYAHR-------SHQIDPDGSYIRSY 395 Query: 429 LPELNNVPTQYIHAPHSWLDKNDLSLNYPLP 459 LPEL ++P+ IH P + D D + YP P Sbjct: 396 LPELAHLPSTLIHTPWAAADDID-THGYPFP 425 >gi|91224260|ref|ZP_01259523.1| deoxyribodipyrimidine photolyase [Vibrio alginolyticus 12G01] gi|91191171|gb|EAS77437.1| deoxyribodipyrimidine photolyase [Vibrio alginolyticus 12G01] Length = 422 Score = 214 bits (544), Expect = 3e-53, Method: Composition-based stats. Identities = 103/402 (25%), Positives = 169/402 (42%), Gaps = 24/402 (5%) Query: 36 KVIAVFI---ATP---EQWRQHGISARQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDD 89 ++I ++ TP ++ + F+ +SL ++ +SL+ G + + Sbjct: 3 ELICLYCYPSMTPYLHHFAQEASFGRAKLQFLDSSLSELNQSLNHLGQRLWAVELTPDQA 62 Query: 90 SIEWLDSYCLQQRVTKLFYNRQYEINEVRR-DKLLEKRLQHRVICKSFDDSVLLPPGSIL 148 ++ + VT ++ + +E + D+ +E V K LL + Sbjct: 63 IKYAVNRF----GVTHIYADAFPGSDEQQALDRAVEGA--SHVKIKQQAIRTLLREEQLP 116 Query: 149 NHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMF 208 + +T FRK + + S+ G PS +FD F Sbjct: 117 FDLSNLPTTFTQFRKQVEGLDISRPHESIRSLPPIPLGVNLPSVTAYYFD-----AKAAF 171 Query: 209 PIGEQNAL-HILRKFCKEKVYYYVEQRD-IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEE 266 GE L H + F Y + R+ + + +++ SP+L+ G +SP+ + LK Sbjct: 172 HGGESRGLEHCRQYFASTLASEYKQTRNGLDGMDYSTKFSPWLAHGCVSPKTIYAMLKRY 231 Query: 267 FVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAW 326 + + EL+WRE++ + I + + +H Q W Sbjct: 232 --EAENGANDSTYWIYFELLWREYFYWYARRHKRQLFRFGGIQNRAPLT-SFYAHRFQQW 288 Query: 327 KQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLA 386 K+G T FPI++A M QLN G+M NR R + AS LV +L +DWR G YF SQL+D D+A Sbjct: 289 KKGETPFPIVNACMHQLNETGYMSNRGRQLVASCLVHELGLDWRYGAAYFESQLVDYDVA 348 Query: 387 SNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHW 428 SN G WQ+ A G D R FN Q + +DP FI W Sbjct: 349 SNWGNWQYLAGVGADPRG-SRQFNLEKQTEMYDPHMEFIDRW 389 >gi|196476809|gb|ACG76268.1| deoxyribodipyrimidine photolyase [Amblyomma americanum] Length = 147 Score = 213 bits (543), Expect = 5e-53, Method: Composition-based stats. Identities = 101/145 (69%), Positives = 119/145 (82%) Query: 335 IIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQW 394 I+DAAMRQLN+ GWMHNRLRMITASFLVKDLL+DWR GE YFMSQL+DGDLA+NNGGWQW Sbjct: 1 IVDAAMRQLNSTGWMHNRLRMITASFLVKDLLIDWREGERYFMSQLIDGDLAANNGGWQW 60 Query: 395 AASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSL 454 AASTG D+ PYFRIFNPT QG++FD +G FIR WLPEL +VP + +H P W K ++L Sbjct: 61 AASTGTDAAPYFRIFNPTTQGEKFDHEGEFIRQWLPELRDVPGKVVHEPWKWAQKAGVTL 120 Query: 455 NYPLPIVDHKKACHHTLNQYYAAKK 479 +YP PIV+HK+A TL Y AA+K Sbjct: 121 DYPQPIVEHKEARVQTLAAYEAARK 145 >gi|313234987|emb|CBY24933.1| unnamed protein product [Oikopleura dioica] Length = 374 Score = 212 bits (541), Expect = 8e-53, Method: Composition-based stats. Identities = 89/374 (23%), Positives = 158/374 (42%), Gaps = 22/374 (5%) Query: 10 HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIAT-PEQWRQHGISARQSHFIYASLLQV 68 + W R LR+ DN+ALY A S V ++I Q + SA ++ F+ L + Sbjct: 7 TVHWFRKGLRLHDNEALYHAVTTSQV-VFPIYILDVDWQTEKEKFSALKTRFLIECLRDL 65 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128 + L + G D+ + +C + +T++ + + EI RD+ + K + Sbjct: 66 DEGLKKCGTRLYVLTG----DATTVIKKFCKENEITQMTWMKDAEIFYRERDEEITKVVH 121 Query: 129 H-RVICKSFDDSVLLPPGSIL-NHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 + KSF L ++ + ++ + F A+ A + Sbjct: 122 RMEIKTKSFLGHTLYDQDEVIAKNGGKIPMDLSEFYAAIADMEQPGAPCPTSCIAPAVDN 181 Query: 187 PVTPSNIPRFFDYPFQAID--PMFPIGEQNALHILRKFCKEKVYYYVEQRD---IPAIQG 241 + IP+ + QA P++ GE+ AL L+ + + + + + Sbjct: 182 HESTYGIPKISVWGHQAPRSLPIYRGGERQALKALQAKINDPTLFTLNGFNQGVKTKLPH 241 Query: 242 TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSV 301 T+ LS Y + G +S R W ++ P+S ++++REF+ + A + Sbjct: 242 TTYLSAYQNYGCISTRHFWKAAEKL-------PESKTIMLRGQIMYREFFY-VAASQVNN 293 Query: 302 CMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFL 361 +IEW K+ L AW++G TG+P IDA MRQL T G++H+ R ASFL Sbjct: 294 FTKMAGNRICRQIEWYKNEEHLSAWQEGRTGYPYIDAVMRQLVTEGFIHHLNRWAVASFL 353 Query: 362 VKD-LLVDWRIGEE 374 L ++W G+E Sbjct: 354 TNGQLWLNWEHGQE 367 >gi|156055622|ref|XP_001593735.1| hypothetical protein SS1G_05163 [Sclerotinia sclerotiorum 1980] gi|154702947|gb|EDO02686.1| hypothetical protein SS1G_05163 [Sclerotinia sclerotiorum 1980 UF-70] Length = 651 Score = 212 bits (540), Expect = 1e-52, Method: Composition-based stats. Identities = 108/518 (20%), Positives = 197/518 (38%), Gaps = 90/518 (17%) Query: 8 SVHLVWLRNDLRITDNKALYAACHNSD---AKVIAVFIATPEQWRQHGI----------- 53 + + +R DLR+ DN L++ HN D ++ +++ +Q G Sbjct: 5 KILIYLMRRDLRVADNPILHSLIHNKDHGFTHLLPLYVFAAQQIEVSGFIPEDGGKSPYP 64 Query: 54 ------------SARQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQ- 100 ++ F+ S+ ++ + G D+ ++ L + Sbjct: 65 EARSQLGAFWRCGPHRAKFLAQSVWDLKDGFEKIGSGLSIR-VGMVDEIVKGLIERFEEG 123 Query: 101 --QRVTKLFYNRQYEINEVRRDKLLEKRL-QHRVICKSFDDSVLL---------PPGSIL 148 +V+ ++ + + E R ++ +K + V K + D P + Sbjct: 124 AGSKVSAVWMTSEEGVEEKREERSTKKICDKAGVDFKLWQDEKYFVDDRDLPFEDPKDLS 183 Query: 149 NHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPSNIP-RFFDYPFQAIDPM 207 + K P R A +L + ++ SLP + +P IP ++ + + P+ Sbjct: 184 DIYTTYRKSVEPLRNAPRPDLPKPEMNSLPPFPTDVPPQHSPFVIPTKYEEIEAALLKPI 243 Query: 208 ---------------------FPIGEQNALHILRKFC-KEKVYYYVEQRD-IPAIQGTSQ 244 F GE +A L + Y R+ + +++ Sbjct: 244 NSQPLVKNPPKCPENTLSVHPFTGGESHAQERLEHLITSGSITGYKSSRNGLMGTDFSTK 303 Query: 245 LSPYLSIGVLSPRQCWNRLK---------EEFVDL---LIKPKSGAFSWLNELIWREFYR 292 LS YL++G ++ RQ + + + DL G ++ EL+WR++ R Sbjct: 304 LSAYLALGSITSRQIHASMSVFENGSTSDDRYKDLEGYGNGENEGTYAVRFELLWRDYMR 363 Query: 293 HLMAFYPS--------VCMGKPFIPW------TEKIEWNKDSHLLQAWKQGYTGFPIIDA 338 + G W + + +++ + G TG IDA Sbjct: 364 LCTRKFGPQLFRLGGFKAEGNAHSKWSRLDSPKDGFSKEQIQEIVERFLNGTTGMGFIDA 423 Query: 339 AMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAAST 398 + R++ G+ NR R ASFL K L +DWRIG E++ L+D D++SN G WQ+ A Sbjct: 424 SQREIYHTGYTSNRARQNVASFLSKHLYIDWRIGAEWYECMLVDYDVSSNWGNWQYVAGV 483 Query: 399 GNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVP 436 GND RIFNP Q +DP+ ++ W+ EL V Sbjct: 484 GNDPRGNDRIFNPVKQAFDYDPKAEYVLAWVDELRGVD 521 >gi|330814060|ref|YP_004358299.1| deoxyribodipyrimidine photolyase [Candidatus Pelagibacter sp. IMCC9063] gi|327487155|gb|AEA81560.1| deoxyribodipyrimidine photolyase [Candidatus Pelagibacter sp. IMCC9063] Length = 184 Score = 212 bits (540), Expect = 1e-52, Method: Composition-based stats. Identities = 81/179 (45%), Positives = 112/179 (62%), Gaps = 6/179 (3%) Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365 +K W +D L+ WKQG TG+PI+DA MR+L+ GWMHNR+RMITASFLVK L Sbjct: 5 NLRKQFDKFNWVRDDAKLKKWKQGKTGYPIVDAGMRELSETGWMHNRVRMITASFLVKHL 64 Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425 ++W GE++F LLD ++ +N GWQW A G D+ PYFRIFNP +QG++FD +G ++ Sbjct: 65 RINWVEGEKHFRDCLLDFNVPNNVAGWQWVAGCGADAAPYFRIFNPILQGEKFDSEGMYV 124 Query: 426 RHWLPELNNVPTQYIHAPHSWLDKND------LSLNYPLPIVDHKKACHHTLNQYYAAK 478 + W+ ELN +P +YIH P + L NY PIV+H +A + L + K Sbjct: 125 KKWVKELNPIPKKYIHKPWEMPEDEQSKVNFNLKKNYYAPIVNHAEARNSALEAFKNLK 183 >gi|293321545|emb|CAZ66368.1| cryptochrome [Crateromorpha meyeri] Length = 520 Score = 211 bits (537), Expect = 2e-52, Method: Composition-based stats. Identities = 106/499 (21%), Positives = 185/499 (37%), Gaps = 41/499 (8%) Query: 10 HLVWLRND-LRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 L +D LRI DN +L + N+ + + + I + F+ SL + Sbjct: 5 TLHIFTDDALRINDNNSLLSNLENTKNLYTVFYY--GHIKKINHIPPHRVIFLLESLKNL 62 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128 ++ L + GI + F + L + + ++ I R L L Sbjct: 63 KERLDEYGIPLYFIDEPMF----QSLRMLISKWNINRVTTEPVVSIVGKRDQLSLRNFLS 118 Query: 129 H-RVICKSFDDSVLLP----PGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIR 183 V+ ++++ S L P +I +L + L + + P Sbjct: 119 AFGVMLRTYNSSTLYDTVKVPVNITRSEFFRIITQMEPELSLPEELTEFLSKFSSFPDPF 178 Query: 184 LTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS 243 + + + + +ID F GE A+ L K + E ++P + + Sbjct: 179 INKKIPSLSEFGITNETMSSIDTKFRGGETAAILQLEKLIANRC----EPNNLPKVAQLN 234 Query: 244 Q---LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPS 300 Q +SP + G +S R +NR+ L K + L R++ + P+ Sbjct: 235 QYDAISPAIKFGCISVRTIYNRV----SKLEPKYNEVKNQIYDGLRNRDYCILVGGNCPN 290 Query: 301 VCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASF 360 + + + W+ ++ G TG+P IDAA+ QL G++HN ++ I Sbjct: 291 IDNQGSIYTYI--LPWDVKQDASTRFQTGRTGYPFIDAAIAQLKREGFIHNSVKNILVRT 348 Query: 361 LVKDL-LVDWRIGEEYFMSQLLDGDLASNNGGWQWAA-STGNDSVPYFRIFNPTIQGKRF 418 L DL + W G F LD + A W + ST NP + K Sbjct: 349 LTCDLMWIGWHEGVRMFYKWSLDYNAAICALSWMHGSKSTWLLEEISISQINPIEEAKEI 408 Query: 419 DPQGTFIRHWLPELNNVPTQYIHAPH------SWLDKNDLSLNYPLP----IVDHKKACH 468 D G +IR +LPEL + P++YIH P + + +YP P + + + C Sbjct: 409 DKDGDYIRKYLPELKDYPSEYIHTPWLAPLDQQIESECVIGQDYPYPNYCDVEERVQQCR 468 Query: 469 HTLNQYYA----AKKQSLL 483 L +Y AKK+ L Sbjct: 469 KRLQIFYNIMPIAKKRRTL 487 >gi|146279110|ref|YP_001169269.1| deoxyribodipyrimidine photo-lyase [Rhodobacter sphaeroides ATCC 17025] gi|145557351|gb|ABP71964.1| Deoxyribodipyrimidine photo-lyase type I [Rhodobacter sphaeroides ATCC 17025] Length = 455 Score = 211 bits (536), Expect = 3e-52, Method: Composition-based stats. Identities = 101/468 (21%), Positives = 165/468 (35%), Gaps = 56/468 (11%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 LVW RNDLR+TD+ AL A D + + I P +W S RQ F L Sbjct: 4 LVWFRNDLRVTDHPALARA----DGHALPLVIVDPAEWADPARSGRQWAFRAECLQD--- 56 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130 L + D + L++ C R+ ++ + + D+ ++ Sbjct: 57 -LREALAALGAPLALRVGDPLTVLETLCRLHRIGRILCIEDLACHAL--DRRVQAWAAAA 113 Query: 131 VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTP 190 + + L PG L P GP+ P Sbjct: 114 GVEFTA-----LAPGPGAPATLTPLPGVEP-------------------------GPIPP 143 Query: 191 SNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIP--AIQGTSQLSPY 248 + + R + P G +L+ F + + +Y + RD P A + S+LSP+ Sbjct: 144 ARVLRIAE---DRCPHRQPGGRMQGRLLLQSFLERRGEHYRDGRDRPLGAERICSRLSPH 200 Query: 249 LSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFI 308 L+ G L+ + + + ++ L + R + + P Sbjct: 201 LATGTLARVEVREAVTARMEEAGPDWTRSLGAFRAALAQADVARGAVCPPAAPEGAAPPE 260 Query: 309 PWTEKIE--WNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLL 366 +++ + +A + G TG P +DAA R L+ GW+ RLR + S + L Sbjct: 261 DIFARMKDGIASGAARREALRLGETGLPFVDAAARALSATGWLPARLRGLLVSAAMHHLR 320 Query: 367 VDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIR 426 + R + L D A + R +P DP+G F R Sbjct: 321 LCERTAGVVIAAGLTDHAPAVHW--------ARVRRAARARPVDPLGLAAALDPEGAFTR 372 Query: 427 HWLPELNNVPTQYIHAPHSWL-DKNDLSLNYPLPIVDHKKACHHTLNQ 473 WLPEL +VP ++ AP W + L YP P+VD A + Sbjct: 373 RWLPELADVPDLFLQAPWRWEGARQLLGRRYPEPLVDPATAIREARRR 420 >gi|327342142|gb|AEA50858.1| cry1-1 [Populus tremula] Length = 308 Score = 210 bits (535), Expect = 4e-52, Method: Composition-based stats. Identities = 85/306 (27%), Positives = 140/306 (45%), Gaps = 12/306 (3%) Query: 117 VRRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRS 176 VR + E + +SF+ +L P + + + + + F + + + Sbjct: 5 VRDHRAKEILTAQGITVRSFNADLLYEPWDVNDAQGRPFTTFDTFWERCLSMPFDPEAPL 64 Query: 177 LPVPAIRLTGPVT--PSNIPRFFDYPFQAIDPM----FPIGEQNALHILRKFCKEKVYYY 230 LP P ++G V+ PS F D + + + + G NA L F + Y Sbjct: 65 LP-PKRIISGDVSRCPSVTLVFEDESEKGSNALLARAWSPGWSNADRALTTFINGPLIEY 123 Query: 231 VEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFS----WLNELI 286 R TS LSP+L G +S R+ ++ ++ + V + ++ + Sbjct: 124 SMNRRKADSATTSFLSPHLHFGEVSVRKVFHLVRIKQVLWANEGNKAGEESVNLFIKSIG 183 Query: 287 WREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTI 346 RE+ R+L +P +P + + W D +AW+QG TG+P++DA MR+L Sbjct: 184 LREYSRYLSFNHP-YTHERPLLGHLKFFPWVVDEGYFKAWRQGRTGYPLVDAGMRELWAA 242 Query: 347 GWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYF 406 GW+H+R+R++ ASF VK L + WR G +YF LLD DL S+ GWQ+ T D + Sbjct: 243 GWLHDRIRVVVASFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYITGTLPDCREFD 302 Query: 407 RIFNPT 412 RI NP Sbjct: 303 RIDNPQ 308 >gi|149210621|ref|XP_001522685.1| hypothetical protein MGCH7_ch7g783 [Magnaporthe oryzae 70-15] gi|86196738|gb|EAQ71376.1| hypothetical protein MGCH7_ch7g783 [Magnaporthe oryzae 70-15] Length = 793 Score = 210 bits (534), Expect = 5e-52, Method: Composition-based stats. Identities = 107/535 (20%), Positives = 174/535 (32%), Gaps = 107/535 (20%) Query: 11 LVWLRNDLRITDNKALYAACHNSD---AKVIAVFIATPEQWRQHGI-------------- 53 + R DLR++DN L+ D ++ V+I G Sbjct: 8 IYLFRKDLRVSDNPILHGLATQKDHGFTHLLPVYIFPANHIEISGFISDQSEKSPYPEAR 67 Query: 54 ---------SARQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVT 104 ++ FI ++ V+ SL S D LD + Sbjct: 68 SKVAGYWRCGPYRAKFISQAVWDVKNSLESINSGLLLRLGSFQDVLEGLLDGLKARGDTC 127 Query: 105 KLFYNRQYEINEVRRDKLLEKRLQHRV--ICKSFDDSVLLPPGSILNHALQMYKVYTPFR 162 ++ + + E++ + + + R K D+ + + Q Sbjct: 128 SVWMVGEEGLEEIQDEISISNVCRTRGYDFEKLVDEKYFIDDRDLNFAEPQELPGIFTDY 187 Query: 163 KALIQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPM--------------- 207 + ++ L + +SLP P P + PF D Sbjct: 188 RKSVEPLRERPRKSLPTPEKDSLPPFPEPDTIAEQSRPFSIPDTYEGFETALLKPVKDFS 247 Query: 208 ----------------FPIGEQNALHILRKFCK-EKVYYYVEQRD-IPAIQGTSQLSPYL 249 F GE L+ + Y R+ + +++LS YL Sbjct: 248 GAPFPEHAENATTAHPFKGGETAGQERLQYVMSSGIIKDYKTSRNGLIGPDFSTKLSAYL 307 Query: 250 SIGVLSPRQCWNRLK----------EEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYP 299 + G ++ RQ L EE S EL+WR++ R Sbjct: 308 AQGCITARQIHESLLAYEDGSAAELEEIEGYGQGENINTKSVREELMWRDYMRLYARKIK 367 Query: 300 SVCM-------GKPFI-------------PWTEKIEWNKDSHL----------------L 323 G+ + P +K+ W L Sbjct: 368 EKLYSVEGPRGGRNYDSSNSGEVVDSGSPPIAKKVIWKTPDPATADPRQIPEPEKIKVCL 427 Query: 324 QAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDG 383 + G TG +IDA+MR+L G+ NR R A+FL K L +DWR G E++ L+D Sbjct: 428 DRFLAGTTGLGLIDASMRELMHTGYTSNRARQNAANFLAKHLGIDWRWGAEWYEMLLVDY 487 Query: 384 DLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQ 438 D+ SN WQ+ A GND RIFNP Q +D +G +++ W+PEL + Sbjct: 488 DVCSNWANWQYVAGVGNDPRGEARIFNPVKQAFDYDKEGAYVKMWVPELAPFGNK 542 >gi|149279053|ref|ZP_01885187.1| deoxyribodipyrimidine photolyase (photoreactivation) [Pedobacter sp. BAL39] gi|149230332|gb|EDM35717.1| deoxyribodipyrimidine photolyase (photoreactivation) [Pedobacter sp. BAL39] Length = 410 Score = 210 bits (534), Expect = 5e-52, Method: Composition-based stats. Identities = 85/392 (21%), Positives = 156/392 (39%), Gaps = 22/392 (5%) Query: 26 LYAACHNSDAKVIAVFIATP-----EQWRQHGISARQSHFIYASLLQVQKSLSQKGIVFQ 80 L A SD+ ++ V+ P Q+ ++ F+ S+ ++ S Q G Sbjct: 2 LVEAISKSDS-ILPVYFFDPYYFDPTQFNTVKTGMSRTKFLLESVAALRASFQQLGGDLL 60 Query: 81 YHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL-QHRVICKSFDDS 139 + E + Q +++++++R+ E + +E L + ++ + F Sbjct: 61 VL----YGKPEELMAGLVDQYEISEVYHHREVAPEETQISTKVEDLLWKLKINLRHFIGH 116 Query: 140 VLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDY 199 L + + V+ F+K ++ + P I +P D Sbjct: 117 TLYNKEDLPFPIKDIPDVFAQFKKKTERDAMVKSCFLSPDH-IEFVENEDWGQLPGLKDL 175 Query: 200 PFQ-----AIDPMFPIGEQNALHILRKFCKEKVYYYVE---QRDIPAIQGTSQLSPYLSI 251 F+ + GE+ L L E Y + ++ +S+LS +LS+ Sbjct: 176 GFEEETFPGEEDALRGGEEAGLQHLSDLLLEGAAVYQKYTAKQSAEREAFSSRLSGWLSL 235 Query: 252 GVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWT 311 G LSPR + +KE + + L L+WR++YR + + + +P Sbjct: 236 GCLSPRMVYWMVKE--AESKFGSNANFNQMLLGLLWRDYYRFMFKKHGTRFFKEPDFESD 293 Query: 312 EKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRI 371 + + +L+ WK TG+P+ID M +LN G++ R++ A++LV L V W Sbjct: 294 FFSSVDPANSVLKKWKTADTGYPLIDNYMTELNDTGYISYTGRLVVATYLVHFLKVHWTN 353 Query: 372 GEEYFMSQLLDGDLASNNGGWQWAASTGNDSV 403 G YF +L+D ASN G W A G D Sbjct: 354 GAVYFEEKLIDYAPASNWGNWANVAGVGKDGK 385 >gi|221638381|ref|YP_002524643.1| Deoxyribodipyrimidine photo-lyase type I [Rhodobacter sphaeroides KD131] gi|221159162|gb|ACM00142.1| Deoxyribodipyrimidine photo-lyase type I [Rhodobacter sphaeroides KD131] Length = 454 Score = 209 bits (533), Expect = 6e-52, Method: Composition-based stats. Identities = 113/488 (23%), Positives = 169/488 (34%), Gaps = 81/488 (16%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 L+W RNDLR+ D+ AL A D +V+ + I P +W S RQ F L ++ Sbjct: 4 LIWFRNDLRVADHPALARAA---DDRVLPLAIVDPAEWADPARSGRQWAFRTECLADLRA 60 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130 L+ G D L C R+ ++F E+ D L+ Sbjct: 61 DLAALGAPLAVR----VGDPQAVLSKLCRLHRIRRIFCLEDPAFAEL--DLALQAWAAGT 114 Query: 131 VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTP 190 ++ A P+PA+ GP+ P Sbjct: 115 G-----------------------------LELIRLKPGPGAPAALTPLPAVE-PGPIPP 144 Query: 191 SNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIP--AIQGTSQLSPY 248 + R + P G +L+ F + + Y + R+ A + +S+LSP+ Sbjct: 145 ARALRLAE---DRCPHRQPGGRPQGQLLLQSFLERRGALYRDGRNRLLQAERASSRLSPH 201 Query: 249 LSIGVLS---------------PRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRH 293 L+ G LS P W R F L +GA + E Sbjct: 202 LAAGTLSREEVLAAVAARLAERPDADWVRSLGAFRAALASGATGARGAVCPPAAPEGAAP 261 Query: 294 LMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRL 353 + + GKP + + L A G TG P +DAA+R + GW+ RL Sbjct: 262 PEDIWTRL-KGKP-----DALRLR-----LAALHAGETGLPFVDAALRAMAASGWLPARL 310 Query: 354 RMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTI 413 R + AS + L + + + L D + + V R +P Sbjct: 311 RGMLASVALHHLGLSEQAAGAALAAGLTDHSPPIHWAQMR--------RVALGRPVDPER 362 Query: 414 QGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND-LSLNYPLPIVDHKKACH--HT 470 DP G F R WLPEL VP + + AP W L YP P+VD A T Sbjct: 363 LAGVLDPDGAFTRRWLPELAEVPDRVLQAPWRWEGARGLLGRRYPEPLVDPSAARAAGRT 422 Query: 471 LNQYYAAK 478 L + A+ Sbjct: 423 LARRPTAR 430 >gi|77462528|ref|YP_352032.1| deoxyribodipyrimidine photo-lyase type I [Rhodobacter sphaeroides 2.4.1] gi|77386946|gb|ABA78131.1| Deoxyribodipyrimidine photo-lyase type I [Rhodobacter sphaeroides 2.4.1] Length = 454 Score = 209 bits (531), Expect = 1e-51, Method: Composition-based stats. Identities = 113/490 (23%), Positives = 170/490 (34%), Gaps = 85/490 (17%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 L+W RNDLR+ D+ AL A D +V+ + I P +W S RQ F L ++ Sbjct: 4 LIWFRNDLRVADHPALARAA---DDRVLPLAIVDPAEWADPARSGRQWAFRAECLADLRA 60 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130 L+ G D+ L C R+ ++ E Sbjct: 61 DLAALGAPLAVR----VGDAQAVLSKLCKLHRIGRILCLEDPAFAE-------------- 102 Query: 131 VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTP 190 L+ ALQ + T ++ A P+PA+ GP+ P Sbjct: 103 -----------------LDLALQAWAGGTGLDFIRLKPGAGAPAALTPLPAVE-PGPIPP 144 Query: 191 SNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIP--AIQGTSQLSPY 248 + R + P G +L+ F + + Y + R+ A + +S+LSP+ Sbjct: 145 ARALRLAE---DRCPHRQPGGRPQGQLLLQSFLERRGALYRDGRNRLLQAERASSRLSPH 201 Query: 249 LSIGVLS---------------PRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRH 293 L+ G LS P W R F L GA + Sbjct: 202 LAAGTLSREEVLAAVAARLAERPDADWVRSLGAFRAALASGAPGARGAVCPPG------- 254 Query: 294 LMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWK--QGYTGFPIIDAAMRQLNTIGWMHN 351 G + ++ E D+ L+ G TG P +DAA+R + GW+ Sbjct: 255 ------RPGGGGSPRGYLDQTEGEADALRLRLAALHAGETGLPFVDAALRAMAASGWLPA 308 Query: 352 RLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNP 411 RLR + AS + L + + + L D + + V R +P Sbjct: 309 RLRGMLASVALHHLGLSEQAAGAALAAGLTDHSPPIHWAQMR--------RVALGRPVDP 360 Query: 412 TIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND-LSLNYPLPIVDHKKACH-- 468 DP G F R WLPEL VP + + AP W L YP P+VD A Sbjct: 361 ERLAGVLDPDGAFTRRWLPELAEVPDRVLQAPWRWEGARGLLGRRYPEPLVDPSAARAAG 420 Query: 469 HTLNQYYAAK 478 TL + A+ Sbjct: 421 RTLARRPTAR 430 >gi|154305828|ref|XP_001553315.1| hypothetical protein BC1G_08145 [Botryotinia fuckeliana B05.10] gi|150853030|gb|EDN28222.1| hypothetical protein BC1G_08145 [Botryotinia fuckeliana B05.10] Length = 651 Score = 209 bits (531), Expect = 1e-51, Method: Composition-based stats. Identities = 107/522 (20%), Positives = 197/522 (37%), Gaps = 92/522 (17%) Query: 5 TAMSVHLVWLRNDLRITDNKALYAACHNSD---AKVIAVFIATPEQWRQHGI-------- 53 + ++ + +R DLR+ DN L++ N D ++ +++ +Q G Sbjct: 2 SHSNILIYLMRRDLRVGDNPVLHSLVDNKDHGFTHLLPLYVFAAQQIEVSGFITTDGCKS 61 Query: 54 ---------------SARQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYC 98 ++ F+ S+ ++ L + D+ ++ L Sbjct: 62 PYPEARSQIGAFWRCGPHRAKFLAESVWDLKGGLEKIESGLAIR-VGMVDEVVKDLIEGF 120 Query: 99 LQQR---VTKLFYNRQYEINEVRRDKLLEKRL-QHRVICKSFDDS-VLLPPGSILNHA-L 152 + V+ ++ + + E R ++ EK + V + + D L+ I Sbjct: 121 QKTGGSKVSAVWMTSEEGVEEKREERSTEKICDKAGVDFQLWQDEKYLIDDRDIPFKDPK 180 Query: 153 QMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT------------PSNIPRFFDYP 200 + VYT +RK++ + L +A +LP P P P+N Sbjct: 181 DLPDVYTTYRKSV-EPLREAPRPALPKPEKNSLPPFPTDVPTQHSPFAIPTNYEEIESAL 239 Query: 201 FQAIDPM------------------FPIGEQNALHILRKFC-KEKVYYYVEQRD-IPAIQ 240 + I+ F GE +A L + Y R+ + Sbjct: 240 LKPINAQPLIKNPPSYPENSLSVHPFTGGESHAQERLEHLITSGSINAYKSSRNGLMGTD 299 Query: 241 GTSQLSPYLSIGVLSPRQCWNRL------------KEEFVDLLIKPKSGAFSWLNELIWR 288 +++LS YL++G ++ RQ + + ++ G + EL+WR Sbjct: 300 FSTKLSAYLALGSITSRQIHSSMSIFENGSDSDNRYKDLEGYGKGENEGTYGVRFELLWR 359 Query: 289 EFYRHLMAFYPSVCMG-------KPFIPWTEKIEWNKD-------SHLLQAWKQGYTGFP 334 ++ R + + +++ +D +++ + G TG Sbjct: 360 DYMRLCTRKFGPKLFQLGGFKDEENAHSKWSRLDSPRDGVSKEQIQEIIERFLNGTTGMG 419 Query: 335 IIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQW 394 IDA+ R+ G+ NR R ASFL K L +DWRIG E++ L+D D++SN G WQ+ Sbjct: 420 FIDASQRECYHTGYTSNRARQNVASFLAKHLYIDWRIGAEWYECMLVDYDVSSNWGNWQY 479 Query: 395 AASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVP 436 A GND RIFNP Q +DP+ ++ W+ EL V Sbjct: 480 VAGVGNDPRGNDRIFNPVKQAFDYDPKAEYVLAWVDELRGVD 521 >gi|39971071|ref|XP_366926.1| hypothetical protein MGG_03002 [Magnaporthe oryzae 70-15] gi|145017156|gb|EDK01519.1| hypothetical protein MGG_03002 [Magnaporthe oryzae 70-15] Length = 770 Score = 208 bits (530), Expect = 1e-51, Method: Composition-based stats. Identities = 107/535 (20%), Positives = 174/535 (32%), Gaps = 107/535 (20%) Query: 11 LVWLRNDLRITDNKALYAACHNSD---AKVIAVFIATPEQWRQHGI-------------- 53 + R DLR++DN L+ D ++ V+I G Sbjct: 8 IYLFRKDLRVSDNPILHGLATQKDHGFTHLLPVYIFPANHIEISGFISDQSEKSPYPEAR 67 Query: 54 ---------SARQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVT 104 ++ FI ++ V+ SL S D LD + Sbjct: 68 SKVAGYWRCGPYRAKFISQAVWDVKNSLESINSGLLLRLGSFQDVLEGLLDGLKARGDTC 127 Query: 105 KLFYNRQYEINEVRRDKLLEKRLQHRV--ICKSFDDSVLLPPGSILNHALQMYKVYTPFR 162 ++ + + E++ + + + R K D+ + + Q Sbjct: 128 SVWMVGEEGLEEIQDEISISNVCRTRGYDFEKLVDEKYFIDDRDLNFAEPQELPGIFTDY 187 Query: 163 KALIQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPM--------------- 207 + ++ L + +SLP P P + PF D Sbjct: 188 RKSVEPLRERPRKSLPTPEKDSLPPFPEPDTIAEQSRPFSIPDTYEGFETALLKPVKDFS 247 Query: 208 ----------------FPIGEQNALHILRKFCK-EKVYYYVEQRD-IPAIQGTSQLSPYL 249 F GE L+ + Y R+ + +++LS YL Sbjct: 248 GAPFPEHAENATTAHPFKGGETAGQERLQYVMSSGIIKDYKTSRNGLIGPDFSTKLSAYL 307 Query: 250 SIGVLSPRQCWNRLK----------EEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYP 299 + G ++ RQ L EE S EL+WR++ R Sbjct: 308 AQGCITARQIHESLLAYEDGSAAELEEIEGYGQGENINTKSVREELMWRDYMRLYARKIK 367 Query: 300 SVCM-------GKPFI-------------PWTEKIEWNKDSHL----------------L 323 G+ + P +K+ W L Sbjct: 368 EKLYSVEGPRGGRNYDSSNSGEVVDSGSPPIAKKVIWKTPDPATADPRQIPEPEKIKVCL 427 Query: 324 QAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDG 383 + G TG +IDA+MR+L G+ NR R A+FL K L +DWR G E++ L+D Sbjct: 428 DRFLAGTTGLGLIDASMRELMHTGYTSNRARQNAANFLAKHLGIDWRWGAEWYEMLLVDY 487 Query: 384 DLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQ 438 D+ SN WQ+ A GND RIFNP Q +D +G +++ W+PEL + Sbjct: 488 DVCSNWANWQYVAGVGNDPRGEARIFNPVKQAFDYDKEGAYVKMWVPELAPFGNK 542 >gi|126461462|ref|YP_001042576.1| DNA photolyase domain-containing protein [Rhodobacter sphaeroides ATCC 17029] gi|126103126|gb|ABN75804.1| Deoxyribodipyrimidine photo-lyase type I [Rhodobacter sphaeroides ATCC 17029] Length = 454 Score = 208 bits (530), Expect = 1e-51, Method: Composition-based stats. Identities = 114/488 (23%), Positives = 170/488 (34%), Gaps = 81/488 (16%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 L+W RNDLR+ D+ AL A D +V+ + I P +W S RQ F L ++ Sbjct: 4 LIWFRNDLRVADHPALARAA---DDRVLPLAIVDPAEWADPARSGRQWAFRAECLADLRA 60 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130 L+ G + L C R+ ++ E Sbjct: 61 DLAALGAPLAVR----VGEPQAVLSKLCRLHRIGRILCLEDPAFAE-------------- 102 Query: 131 VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTP 190 L+ ALQ + T ++ A P+PA+ GP+ P Sbjct: 103 -----------------LDLALQAWAGGTGLDFIRLKPCAGAPAALTPLPAVE-PGPIPP 144 Query: 191 SNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIP--AIQGTSQLSPY 248 + R + P G +L+ F + + Y + R+ A + +S+LSP+ Sbjct: 145 ARALRLAE---DRCPHRQPGGRPQGQLLLQSFLERRGALYRDGRNRLLQAERASSRLSPH 201 Query: 249 LSIGVLS---------------PRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRH 293 L+ G LS P W R F L GA + E Sbjct: 202 LAAGTLSREEVLAAVAARLAERPDADWVRSLGAFRAALASGAPGARGAVCPPAAPEGAAP 261 Query: 294 LMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRL 353 + + GKP + + L A G TG P +DAA+R + GW+ RL Sbjct: 262 PEDIWTRL-KGKP-----DALRLR-----LAALHAGETGLPFVDAALRAMAASGWLPARL 310 Query: 354 RMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTI 413 R + AS + L + + + L D + + V R +P Sbjct: 311 RGMLASVALHHLGLSEQAAGAALAAGLTDHSPPIHWAQMR--------RVALGRPVDPER 362 Query: 414 QGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND-LSLNYPLPIVDHKKACH--HT 470 DP G F R WLPEL VP + + AP W L YP P+VD A T Sbjct: 363 LAGVLDPDGAFTRRWLPELAEVPDRVLQAPWRWEGARGLLGRRYPEPLVDPSAARAAGRT 422 Query: 471 LNQYYAAK 478 L + A+ Sbjct: 423 LARRPTAR 430 >gi|255038083|ref|YP_003088704.1| Deoxyribodipyrimidine photo-lyase [Dyadobacter fermentans DSM 18053] gi|254950839|gb|ACT95539.1| Deoxyribodipyrimidine photo-lyase [Dyadobacter fermentans DSM 18053] Length = 396 Score = 208 bits (529), Expect = 2e-51, Method: Composition-based stats. Identities = 89/405 (21%), Positives = 166/405 (40%), Gaps = 28/405 (6%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQ-----SHFIYASL 65 + W RNDLR+ DN+AL AA ++D ++I V++ P Q+ + + R+ + F+ S+ Sbjct: 6 IYWFRNDLRLKDNQALSAAVGSAD-EIIPVYVFDPRQFEKTKLGFRRTGALRARFLIESV 64 Query: 66 LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125 ++++++ QKG + + ++ +++ E R + L K Sbjct: 65 AELRENIRQKGGDLIIRTGAPE----AIVAQLAEDYNADYVYTSKEIAPQETRIESSLSK 120 Query: 126 RLQ-HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL 184 L+ V K F ++ + ++ + F + L +L D P +I L Sbjct: 121 NLKTANVDIKLFWMDTMINATDLPFPVSKLPSGFAEFERLLSNDLKIKDQFPTPA-SITL 179 Query: 185 TGPVTPSNIPRFFDYPFQ------AIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPA 238 V IP + GE AL +L+++ +E V + P+ Sbjct: 180 PADVEAGAIPGLPELGIDPNEIPAGTTGPLAGGEARALAVLKEYVEEYV---KKDIAYPS 236 Query: 239 IQ--GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMA 296 + ++LS +LS+G +S + +K +++ + L+ REF + Sbjct: 237 AEPLTDTRLSDWLSLGCVSASYIYRSVKTAQSHAVVED-----PIITNLLRREFLHWTLL 291 Query: 297 FYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMI 356 + + W D+ + W G TG I+ +R+L G++ R Sbjct: 292 RFGPRMFKPSGVKHHFNRRWKNDNAAFEKWINGQTGDQSINDIIRRLTATGFITAAERES 351 Query: 357 TASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGND 401 A +LV DL ++W G YF S L+D + + N G W A G D Sbjct: 352 AARYLVDDLDINWTWGAMYFESLLMDYEASVNWGRWNHIAGVGED 396 >gi|300781310|ref|ZP_07091164.1| deoxyribodipyrimidine photolyase [Corynebacterium genitalium ATCC 33030] gi|300533017|gb|EFK54078.1| deoxyribodipyrimidine photolyase [Corynebacterium genitalium ATCC 33030] Length = 286 Score = 208 bits (529), Expect = 2e-51, Method: Composition-based stats. Identities = 102/299 (34%), Positives = 142/299 (47%), Gaps = 52/299 (17%) Query: 197 FDYPFQAIDPMFP---IGEQNALHILRKFCKE-KVYYYVEQRDIPAIQGTSQLSPYLSIG 252 FD PF A++ + GE A R F + Y + DIP+ TS LS +L G Sbjct: 8 FDEPFWAVETLATHCHPGEMQAQRKFRDFLEGLADTSYKDNNDIPSADATSGLSAHLRFG 67 Query: 253 VLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTE 312 +SP Q W F D + A+++L +L+WR+F H + + P++ + Sbjct: 68 EISPAQIWAE-TAAFADANHTVAADAWAFLRQLLWRDFAWHRLYYIPTLAT-RNVREQFN 125 Query: 313 KIEW---------------------NKDSHL------LQAWKQGYTGFPIIDAAMRQLNT 345 W D L W++G TG P++DA MR+L Sbjct: 126 AFPWAWTDQPTPGSTTRAFAHPEMVPNDPDEAQHLDELALWQKGETGIPMVDAGMRELWA 185 Query: 346 IGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPY 405 G MHNR+RM+ S+L K+L + WR GEE+F L+D D ASN WQW A G+D+ PY Sbjct: 186 TGTMHNRVRMVVGSWLTKNLGIHWRHGEEWFWDTLVDADYASNPFNWQWVAGCGDDAAPY 245 Query: 406 FRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHK 464 FRIFNP +Q ++FDPQG +I W+PE H P YP P+VD K Sbjct: 246 FRIFNPLLQEEKFDPQGIYINQWVPE--------RHTPM-----------YPEPMVDVK 285 >gi|313230294|emb|CBY07998.1| unnamed protein product [Oikopleura dioica] Length = 429 Score = 207 bits (528), Expect = 2e-51, Method: Composition-based stats. Identities = 95/373 (25%), Positives = 153/373 (41%), Gaps = 26/373 (6%) Query: 8 SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQH---GISARQSHFIYAS 64 + + R DLRI DN +L AA + K++ VFI PEQ + S F+ S Sbjct: 67 KIAVFIFRRDLRIFDNTSLIAAAADG-FKILPVFIFPPEQIDEKENEYFSHPCVQFMCLS 125 Query: 65 LLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLE 124 L QV K L + G + + +N + L + ++ N Y V RD+ + Sbjct: 126 LSQVHKELVKIGSKLNFIKLAN----ADALTQLKKEVNFDAVYSNEDYSFYAVSRDQEVR 181 Query: 125 KRL-QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIR 183 ++RV +D ++ L+ + + + F + N + Sbjct: 182 SWCRENRVKFVQKEDYGMMKLDENLDKHKRPIRTHAAFMRGFRANCTVRRPTEVAWTPDN 241 Query: 184 LTGPVTPSNIPRFFDYPFQAIDPMF--PIGEQNALHILRKFCKEKVYYYVEQRDIPAIQG 241 IP + F +P G + L+ F EK+ Y Q ++ + Sbjct: 242 FVSFDLNCEIPEQQIHTFYENNPKLAVTPGRSGGMANLKSF--EKLVDYRAQHNMLDQE- 298 Query: 242 TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSV 301 TS+ SP+ G +S R+ + R + F + F + +L WRE Y + A P Sbjct: 299 TSRSSPHTKFGTVSVRETYWRGMDLFGED--------FHVIRQLGWREMYLKVYAARPEW 350 Query: 302 CMGKPFIPWTE-KIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASF 360 G+ + ++W+ D + Q W QG TGFPI+DA MR+LN G+ HNR RM AS Sbjct: 351 QKGQSIHKILDEHVDWSYDEEVFQKWCQGETGFPIVDAGMRELNETGFQHNRARMNCASV 410 Query: 361 LV---KDLLVDWR 370 L + + W Sbjct: 411 LTWGGQLMAAWWE 423 >gi|323335406|gb|EGA76693.1| Phr1p [Saccharomyces cerevisiae Vin13] Length = 357 Score = 207 bits (526), Expect = 4e-51, Method: Composition-based stats. Identities = 94/345 (27%), Positives = 159/345 (46%), Gaps = 25/345 (7%) Query: 54 SARQSHFIYASLLQVQKSLSQKGIVFQYHQ-------CSNFDDSIEWLDSYCLQQR---V 103 S + FI +L +Q+SL++ I + SN + +E+ C+ Sbjct: 3 SGWKLMFIMGALKNLQQSLAELHIPLLLWEFHTPKSTLSNSKEFVEFFKEKCMNVSSGTG 62 Query: 104 TKLFYNRQYEINEVRRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRK 163 T + N +Y+ +E+ RD L + HR+ K + DS ++ PG I Y V+TP+ K Sbjct: 63 TIITANIEYQTDELYRDIRLLENEDHRLQLKYYHDSCIVAPGLITTDRGTNYSVFTPWYK 122 Query: 164 ALIQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFP-----------IGE 212 + + + + + + P+ + + + D + E Sbjct: 123 KWVLYVNNYKKSTSEICHLHIIEPLKYNETFELKPFQYSLPDEFLQYIPKSKWCLPDVSE 182 Query: 213 QNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKE----EFV 268 + AL L+ F K Y ++D+ + GTS LS Y++ G +S R N+ + + + Sbjct: 183 EAALSRLKDFLGTKSSKYNNEKDMLYLGGTSGLSVYITTGRISTRLIVNQAFQSCNGQIM 242 Query: 269 DLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQ 328 +K S +++ E+ WR+FYRH M +P MG P+ T I+W + + W Sbjct: 243 SKALKDNSSTQNFIKEVAWRDFYRHCMCNWPYTSMGMPYRLDTLDIKWENNPVAFEKWCT 302 Query: 329 GYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGE 373 G TG PI+DA MR+L G+++NR RMITASFL K L+ +G Sbjct: 303 GNTGIPIVDAIMRKLLYTGYINNRSRMITASFLSKKLINRLEMGG 347 >gi|332557413|ref|ZP_08411735.1| deoxyribodipyrimidine photo-lyase [Rhodobacter sphaeroides WS8N] gi|332275125|gb|EGJ20440.1| deoxyribodipyrimidine photo-lyase [Rhodobacter sphaeroides WS8N] Length = 454 Score = 207 bits (526), Expect = 4e-51, Method: Composition-based stats. Identities = 113/483 (23%), Positives = 169/483 (34%), Gaps = 81/483 (16%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 L+W RNDLR+ D+ AL A D +V+ + I P +W S RQ F L ++ Sbjct: 4 LIWFRNDLRVADHPALARAA---DDRVLPLAIVDPAEWADPARSGRQWAFRAECLADLRA 60 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130 L+ G + L C R+ ++ E Sbjct: 61 DLAALGAPLAVR----VGEPQAVLSKLCRLHRIGRILCLDDPAFAE-------------- 102 Query: 131 VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTP 190 L+ ALQ + T ++ A P+PA+ GP+ P Sbjct: 103 -----------------LDLALQAWAGGTGLDFIRLKPGAGAPAALTPLPAVE-PGPIPP 144 Query: 191 SNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIP--AIQGTSQLSPY 248 + R + P G +L+ F + + Y + R+ A + +S+LSP+ Sbjct: 145 ARALRLAE---DRCPHRQPGGRPQGQLLLQSFLERRGALYRDGRNRLLQAERASSRLSPH 201 Query: 249 LSIGVLS---------------PRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRH 293 L+ G LS P W R F L +GA + E Sbjct: 202 LATGTLSREEVLAAVAARLAERPDADWVRSLGAFRAALASGATGARGAVCPPAAPEGAAP 261 Query: 294 LMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRL 353 + + GKP + + L A G TG P +DAA+R + GW+ RL Sbjct: 262 PEDIWTRL-KGKP-----DALRLR-----LAALHAGETGLPFVDAALRAMAASGWLPARL 310 Query: 354 RMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTI 413 R + AS + L + + + L D + + V R +P Sbjct: 311 RGMLASVALHHLGLSEQAAGAALAAGLTDHSPPIHWAQMR--------RVALGRPVDPER 362 Query: 414 QGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND-LSLNYPLPIVDHKKACH--HT 470 DP G F R WLPEL VP + + AP W L YP P+VD A T Sbjct: 363 LAGVLDPDGAFTRRWLPELAEVPDRVLQAPWRWEGARGLLGRRYPEPLVDPSAARAAGRT 422 Query: 471 LNQ 473 L + Sbjct: 423 LAR 425 >gi|312212963|emb|CBX93045.1| hypothetical protein [Leptosphaeria maculans] Length = 989 Score = 206 bits (525), Expect = 6e-51, Method: Composition-based stats. Identities = 117/560 (20%), Positives = 191/560 (34%), Gaps = 128/560 (22%) Query: 3 ATTAMSVHLVWLRNDLRITDNKALYAACHNSD---------------------------- 34 A + L LR D+R++DN +AA + Sbjct: 302 AVEKPRILLYILRRDVRLSDNPVFHAASQQTRLNTAAAAKAANPSPQSDRRGRDDSLTSE 361 Query: 35 ------AKVIAVFIATPEQWRQHGI-----------------------SARQSHFIYASL 65 ++ V++ Q G + F+ Sbjct: 362 HASTDFTHLLPVYVFPANQVEISGFLSSPSDKNPYPEARSQVAKIWRTGPHRIRFMAEGA 421 Query: 66 LQVQKSLSQK--GIVFQYHQCSNFDDSIEWLDSYCLQQR----VTKLFYNRQYEINEVRR 119 +++ L G + + D L+ Y Q+ VT ++ E Sbjct: 422 WDLKRKLESLKCGSGLEMRVGAIPDVVSNILEWYSKQEDSKGKVTGVWMTDDDGTEEKSD 481 Query: 120 DKLLEKRL-QHRVICKSFDDSVLLPPGSIL--NHALQMYKVYTPFRKALI--------QN 168 +K L+ +HRV K + D L + ++ VYT +RKAL + Sbjct: 482 EKTLKSLTEKHRVDFKVYRDEKYYVDDRDLSYKNISELPNVYTSYRKALEPLRDRPRNEF 541 Query: 169 LVQADLRSLPVPAIR-----------------LTGPVTPSNIPRFFDYPFQAIDPM---- 207 L LP L+ P+ + P D Sbjct: 542 PAPTQLPPLPEHIPPQQRPFTIPDNLDALLQALSSPLEKDPTYTLSEPPKYPTDVQSAHP 601 Query: 208 FPIGEQNALHILRKFCK-EKVYYYVEQRD-IPAIQGTSQLSPYLSIGVLSPRQCWNRLKE 265 F GE +AL+ + + Y E R+ + + +++LS +L+ G L+ R + + Sbjct: 602 FAGGETSALNRVSHLISSGAMSSYKETRNGMLGLDFSTKLSAFLAQGHLTARHVHWAMFD 661 Query: 266 EFVDLL---------IKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEW 316 +G + EL+WR++ R M + I + + Sbjct: 662 FEEGRGPGKDVKGYGQGENAGTAAVRFELLWRDYMRLCMRKFGDRMFHLYGIQNQDAKDG 721 Query: 317 NKDS---------------------HLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRM 355 N+ ++ G TG +IDA+ R+L G+ NR R Sbjct: 722 NRPQMKKWKKLDGSGGAGDDPKQTLEAFTRFRSGRTGVGLIDASNRELFVTGYTSNRARQ 781 Query: 356 ITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQG 415 ASFL L +DWRIG E++ L D D ASN G WQ+ A GND R+FNP Q Sbjct: 782 NVASFLASHLNIDWRIGAEWYECFLTDYDCASNWGNWQYVAGVGNDPRQ-GRVFNPVKQA 840 Query: 416 KRFDPQGTFIRHWLPELNNV 435 +DP+G +I+ W+PEL + Sbjct: 841 FDYDPKGEYIKAWVPELRGI 860 >gi|145354261|ref|XP_001421409.1| predicted protein [Ostreococcus lucimarinus CCE9901] gi|145354330|ref|XP_001421440.1| predicted protein [Ostreococcus lucimarinus CCE9901] gi|144581646|gb|ABO99702.1| predicted protein [Ostreococcus lucimarinus CCE9901] gi|144581677|gb|ABO99733.1| predicted protein [Ostreococcus lucimarinus CCE9901] Length = 565 Score = 206 bits (524), Expect = 6e-51, Method: Composition-based stats. Identities = 104/410 (25%), Positives = 161/410 (39%), Gaps = 33/410 (8%) Query: 101 QRVTKLFYNRQYEINEVRRDKLLEKRLQHRVICKSFDDSVLLPPGSI---LNHALQMYKV 157 T+ F +R+YE D+ ++ +L P I L + Sbjct: 8 VGATRAFASRRYEPTADADDEETAASVRDACEIVRLPGYLLFEPEKIQIDLRREKYFFGT 67 Query: 158 YTPFRKALIQ-------------NLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAI 204 PF A + + DL A L S++ + D+ I Sbjct: 68 LMPFVHAAEKLGGKVGAPRAAPASARVVDLGPEHGFAASLEELGIVSDVDKRLDW-AAGI 126 Query: 205 DPMFPIGEQNALHILRKFCKEKVYYYVEQR---DIPAIQGTSQLSPYLSIGVLSPRQCWN 261 + + E A F + + + DI A S LSPYL G +SPRQ ++ Sbjct: 127 RAEWTMSESGAASTWEHFASVGLEKFEDDHGRADIVAPAAVSTLSPYLRHGQISPRQIYH 186 Query: 262 RLK-EEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDS 320 L ++ ++ K + + + L REF + +P + + + W + Sbjct: 187 ELATKKMGSDGVEGKKLSRVFWHRLYRREFAYWQLHNWPELPSKSVRGHYENRKAWLEGD 246 Query: 321 HL---LQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFM 377 L W+ G TGFP +DA MR+L GWMH RMI A+FLV V W G ++F+ Sbjct: 247 EAAVALHRWQTGTTGFPTVDAGMRRLWATGWMHQSERMIAATFLVDYCGVHWTHGADWFL 306 Query: 378 SQLLDGDLASNNGGWQWAASTGNDSVPYFR-IFNPTIQGKRFDPQGTFIRHWLPELNNVP 436 L+D DLA N+ WQ A +G D F P + DP+G I W+PEL +P Sbjct: 307 DTLVDADLAINSMMWQNAGKSGLDQWDVFAGSLTPDGSSRAHDPEGESIARWIPELAALP 366 Query: 437 TQYI-HAPHSWLDKN------DLSLNYPLPIV-DHKKACHHTLNQYYAAK 478 ++ H P K +L YP ++ D + A L+ A + Sbjct: 367 KGHLRHRPWEASAKQLDAAGVELGSTYPTRMITDLEGARRRMLDDVNALR 416 >gi|329909778|ref|ZP_08275122.1| Deoxyribodipyrimidine photolyase [Oxalobacteraceae bacterium IMCC9480] gi|327546398|gb|EGF31408.1| Deoxyribodipyrimidine photolyase [Oxalobacteraceae bacterium IMCC9480] Length = 439 Score = 206 bits (524), Expect = 8e-51, Method: Composition-based stats. Identities = 100/403 (24%), Positives = 162/403 (40%), Gaps = 28/403 (6%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQ-----WRQHGISARQSHFI 61 MS + W RNDLR+ DN A AC S + ++ VF P W + + F+ Sbjct: 1 MSTVIYWFRNDLRLLDNPAFLLACRES-SHIVPVFCHDPSDRALTHWGFERVGDHRRAFL 59 Query: 62 YASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDK 121 A+L + L+ +G + L + T + +E + Sbjct: 60 AATLADLAAQLAARGSELI----ELAGRPQDVLPALARSIGATCIVGEAIAAPDEQDAVQ 115 Query: 122 LLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPA 181 L + S LL P ++ ++ ++T FR A+ + V + Sbjct: 116 ALRTA---GLNIDLVWQSSLLEPDALPFSTRRLPDMFTLFRTAVEKADVAPPVPEDYPAL 172 Query: 182 IRLTGPVTPSNIPRFFD----YPFQAIDPMFP-------IGEQNALHILRKFCKEKVYY- 229 I + R+ D P + FP G L L ++ + K+ + Sbjct: 173 IPPLPVLPSPLPHRWQDSPPALPDTDVRSSFPYQSAVCAGGTSAGLAHLHQYLERKLAHT 232 Query: 230 YVEQRD-IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWR 288 Y + R+ + + +S+ SP+L+ G LS R +++ D + EL+WR Sbjct: 233 YKDTRNGLMGLDYSSKFSPWLATGALSARTINAAIEQFEDD--FGANDSTYWLWFELLWR 290 Query: 289 EFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGW 348 +++R L Y + D+ W G TG PI+DA MR+L T G+ Sbjct: 291 DYFRFLHLKYGRKLYRHYGLADAGMARPVHDAAQFARWSHGLTGEPIVDAGMRELATTGY 350 Query: 349 MHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGG 391 + NRLR I AS+L+ DL DWR G +F SQL+D D+ S G Sbjct: 351 LSNRLRQIVASYLIHDLGGDWRAGAAWFESQLVDYDVYSQPGQ 393 >gi|269965812|ref|ZP_06179907.1| conserved hypothetical protein [Vibrio alginolyticus 40B] gi|269829547|gb|EEZ83786.1| conserved hypothetical protein [Vibrio alginolyticus 40B] Length = 343 Score = 205 bits (522), Expect = 1e-50, Method: Composition-based stats. Identities = 76/293 (25%), Positives = 122/293 (41%), Gaps = 18/293 (6%) Query: 201 FQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIP--AIQGTSQLSPYLSIGVLSPRQ 258 M G + A L F + Y P + ++LSPYL+ G +S R+ Sbjct: 34 LSKCKGMQTGGSRLAWKTLEDFFHRRGRDYYRSISSPTASRTACTRLSPYLAWGNISLRE 93 Query: 259 CWNRLKEEFVDLLIKPK----SGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKI 314 + L + + + S W I + + M FY C+ + + P ++ Sbjct: 94 VYQYLLKHWQVAGFRRSLIALSSRLHWHCHFIQKFESEYDMEFY---CVNRAYEPLIKQS 150 Query: 315 EWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEE 374 D L AWK G+TG P+IDA MR L+ G+++ R+R + SFL + +DWR+G Sbjct: 151 S-TFDEEKLAAWKSGHTGVPLIDACMRCLHHTGYINFRMRAMLVSFLTHHMNMDWRVGVT 209 Query: 375 YFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNN 434 + LD + + +Q G RI+NP Q + DP GTFI W+PEL Sbjct: 210 HLAQLFLDFEPGIHYPQFQMQ--AGVTGTNTIRIYNPIKQAQEHDPNGTFIYKWVPELQM 267 Query: 435 VPTQYIHAPHSWLDKNDL------SLNYPLPIVDHKKACHHTLNQYYAAKKQS 481 VP + P + + Y PI+ + +A +K++ Sbjct: 268 VPPPLLFEPWTMTQMEAVMYQLQPDSRYLAPIIAPDNTAKAARERLWAWRKRA 320 >gi|189200290|ref|XP_001936482.1| cryptochrome DASH [Pyrenophora tritici-repentis Pt-1C-BFP] gi|187983581|gb|EDU49069.1| cryptochrome DASH [Pyrenophora tritici-repentis Pt-1C-BFP] Length = 675 Score = 205 bits (522), Expect = 1e-50, Method: Composition-based stats. Identities = 111/551 (20%), Positives = 185/551 (33%), Gaps = 118/551 (21%) Query: 1 MKATTAMSVHLVWLRNDLRITDNKALY-AACHNSD------------------------- 34 M + + L LR D+R++DN + AA + Sbjct: 1 MSSKVPR-ILLYVLRRDVRLSDNPIFHTAALQTARQTSWRNSANSDRRHRDDSLTSEHGG 59 Query: 35 ---AKVIAVFIATPEQWRQHGI----------------------SARQSHFIYASLLQVQ 69 ++ V++ + Q G + FI + ++ Sbjct: 60 ASFTHLLPVYVWSANQIEVSGFLPASTPSPYPEARSAVAKVWRTGPHRVQFIADGVWDLK 119 Query: 70 KSLSQK--GIVFQYHQC---SNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLE 124 L+ G + D ++W + ++ ++ E R + L Sbjct: 120 NKLADLDCGSGLEQRVGKITEVVSDILDWYAKDENEGEISGVWMTEDDATEEKREEAELA 179 Query: 125 K-RLQHRVICKSFDDSVLLPPG---------SILNHALQMYKVYTPFRKALIQNLVQAD- 173 K QH V K + D + N KV+ P R + L Sbjct: 180 KITKQHGVDFKVWKDEKFYIDDRDLPYDNIADLPNVYTTFRKVFEPLRDRPRETLPTPSL 239 Query: 174 -----------------LRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPM----FPIGE 212 SL L P+ P D F GE Sbjct: 240 LPPLPPSIPPQKEPFSIPSSLADLKKALLSPLEKDPAYTLKMPPKWPTDAQSAHPFSGGE 299 Query: 213 QNALHILRKFC-KEKVYYYVEQRD-IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDL 270 L + + Y + R+ + + +++LS YL+ G ++ RQ + + Sbjct: 300 SAGLQRIAHLVASGAMSSYKQTRNGMLGLDFSTKLSAYLAQGHITARQVHWAMLDFEEGR 359 Query: 271 LIKPK---------SGAFSWLNELIWREFYRHLMAFYPSVCMG----------------- 304 K G + EL+WR++ R M + G Sbjct: 360 GPGEKKHAYGQGENEGTAAVRFELLWRDYMRLCMRKFGHKMFGLYGIQDRGAKGSQHKKW 419 Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364 K + + K + + ++ G TG +IDA+ R+L G+ NR R ASFL Sbjct: 420 KKLYKGEDGEDPQKTMEVFERFRSGRTGVGLIDASNRELFVTGYTSNRARQNVASFLSSH 479 Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424 L +DWR+G E++ L+D D ASN G WQ+ A GND R+FNP Q +D +G + Sbjct: 480 LNIDWRVGAEWYECFLVDYDAASNWGNWQYVAGVGNDPRQ-GRVFNPVKQALDYDKRGEY 538 Query: 425 IRHWLPELNNV 435 I+ W+PEL ++ Sbjct: 539 IKAWVPELRDI 549 >gi|212721834|ref|NP_001132651.1| hypothetical protein LOC100194126 [Zea mays] gi|194694998|gb|ACF81583.1| unknown [Zea mays] Length = 428 Score = 202 bits (515), Expect = 8e-50, Method: Composition-based stats. Identities = 79/222 (35%), Positives = 118/222 (53%), Gaps = 10/222 (4%) Query: 269 DLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQ 328 + + +L + RE+ R+L +PS +P + W D + W+Q Sbjct: 9 EGNHAAEESCTLFLRSIGLREYSRYLSFNHPS-SHERPLLAHLRFFPWVVDESYFKIWRQ 67 Query: 329 GYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASN 388 G TG+P++DA MR+L GW+H+R+R++ ASF VK L + WR G +YF LLD DL S+ Sbjct: 68 GRTGYPLVDAGMRELWATGWLHDRIRVVVASFFVKVLQLPWRWGMKYFWDTLLDADLESD 127 Query: 389 NGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPH---- 444 GWQ+ + D RI NP +G +FDP G ++R W+PEL +PT++IH P Sbjct: 128 ALGWQYITGSLPDGRELDRIDNPQFEGYKFDPHGEYVRRWIPELARLPTEWIHHPWDAPV 187 Query: 445 SWLDKNDLSL--NYPLPIVDHKKAC---HHTLNQYYAAKKQS 481 S L + L NYPLPIV+ A L++ + + S Sbjct: 188 SVLQAAGIELGSNYPLPIVELDAAKGRLQAALSEMWQLEAAS 229 >gi|221124384|ref|XP_002163516.1| PREDICTED: similar to cryptochrome dash [Hydra magnipapillata] Length = 438 Score = 202 bits (513), Expect = 1e-49, Method: Composition-based stats. Identities = 98/445 (22%), Positives = 161/445 (36%), Gaps = 45/445 (10%) Query: 18 LRITDNKALYAACHNSDAKVI----AVFIATPEQWRQHGISARQSHFIYASLLQVQKSLS 73 +R+ DN A AC + V A W G+S + + A++ ++++ L Sbjct: 1 MRLQDNPAWTRACAMGRPVLAVTFAPVLSAREAAWGIPGLSPSRKAWWAATVQELRRELD 60 Query: 74 QKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHRVIC 133 G+ + + E L L E L ++ Sbjct: 61 ALGVSLLVLRGGSM----EALVRLFEASGAVALVCEEIAAPYER---AQLSSLRASGIVV 113 Query: 134 KSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPSNI 193 S L + + V+T FR + + V LP P + + Sbjct: 114 HSVWQGTLFKAEDLPFSVTDLPGVFTRFRNEVERAKVPFR-TPLPAPVNVTGYDLACDAV 172 Query: 194 PRFFDY----------PFQAIDPMFPIGEQNA-----------------LHILRKFCK-E 225 D+ + G A L+ + + Sbjct: 173 SFAEDFVDGAAAGKFVADPRSAFQWRSGSSGANDEVLHLDEVLAGSGGGHAYLQHYLESG 232 Query: 226 KVYYYVEQRD-IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNE 284 +V Y R+ + + +S+ SP+L++G +S + LK + G++ E Sbjct: 233 RVAQYKATRNGLTGMAYSSKWSPWLALGAVSAPELMAALKAHEREHGT--TDGSYWLWFE 290 Query: 285 LIWREFYRHLMAFYPSVCMG-KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQL 343 L+WR+++R L Y + K + + W QG TG ++DA MR+L Sbjct: 291 LLWRDYFRWLHLQYGAGLYRPKGLLEAAKSERVPHHRRSFTLWTQGRTGCDLVDAGMREL 350 Query: 344 NTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSV 403 G++ NR+R + ASFL+ +L DWR G +F SQLLD D+ SN G W + A G D Sbjct: 351 ACSGYLSNRMRQVVASFLIYELGCDWRAGAAWFESQLLDFDVYSNQGNWLYIAGLGTDPR 410 Query: 404 PYFRIFNPTIQGKRFDPQGTFIRHW 428 R FN Q DP G + W Sbjct: 411 GGRR-FNVAKQTADHDPDGAYRALW 434 >gi|45643655|gb|AAS72903.1| cryptochrome 4 [Passer domesticus] Length = 359 Score = 202 bits (513), Expect = 1e-49, Method: Composition-based stats. Identities = 86/365 (23%), Positives = 140/365 (38%), Gaps = 25/365 (6%) Query: 16 NDLRITDNKALYAACHNSDAKVIAVFIATPEQW-RQHGISARQSHFIYASLLQVQKSLSQ 74 LR+ DN L AA +S+A + V+I I A + +F+ SL + K+L Q Sbjct: 1 KGLRLHDNPVLLAALESSEA-LYPVYILDRAFLTSSMHIGALRWNFLLQSLEDLHKNLGQ 59 Query: 75 KGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR-LQHRVIC 133 G Q + L + + +T++ + + E + +++ ++ Sbjct: 60 LGSCLLVIQG----EYEIVLRDHIQKWNITQVTLDAEMEPFYKEMEANIQRLGVELGFEV 115 Query: 134 KSFDDSVLLPPGSILN-HALQMYKVYTPFRKAL---------IQNLVQADLRSLPVPAIR 183 S L IL+ + Y F L ++N+ D + P Sbjct: 116 FSLVSHSLYNTQRILDLNGGSPPLTYKRFLHILSLLGDPEVPVRNVTAEDFQRCRAPDPG 175 Query: 184 LTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVY--YYVEQRDIPA--I 239 L P + GE L L + ++ + + + R +P + Sbjct: 176 LAECYRVPLPVDLKISPESLSP--WRGGETEGLQRLERHLTDQGWVTSFTKPRTVPNSLL 233 Query: 240 QGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYP 299 T+ LSPY S+G LS R + RL + S +L+WREF+ + + P Sbjct: 234 PSTTGLSPYFSMGCLSVRTFFYRLSNIYAQAK-HHSLPPVSLQGQLLWREFFYTVASATP 292 Query: 300 SVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITAS 359 + P +I W KD+ L WK TGFP IDA M QL GW+H+ R A Sbjct: 293 NFT-QMAGNPICLQICWYKDAERLHKWKTAQTGFPWIDAIMTQLRQEGWIHHLARHAVAC 351 Query: 360 FLVKD 364 FL + Sbjct: 352 FLTRG 356 >gi|28625001|emb|CAD24679.1| photolyase related protein [Aphrocallistes vastus] Length = 563 Score = 201 bits (510), Expect = 3e-49, Method: Composition-based stats. Identities = 100/489 (20%), Positives = 189/489 (38%), Gaps = 40/489 (8%) Query: 8 SVHLVWLRND-LRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 V L N LR+ DN ALY A + K AV+I + ++ + F+ L Sbjct: 45 KVLLHIFNNRHLRLKDNTALYQAMAQNPDKFYAVYIFD--GFDSKPVAPVRWQFLIDCLE 102 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 +++ L+ G+ + I+ L + +V L N ++N ++ + K Sbjct: 103 DLKEQLNGFGLELYCFRGET----IDVLATLVQAWKVKLLSINMDPDVNFTFFNEKIVKM 158 Query: 127 LQHRVICKSFDD----SVLLPP----GSILNHALQ--MYKVYTPFRKALIQNLVQADLRS 176 + ++D +L P +I + + + T + L D+ Sbjct: 159 CTIN-AVQLYNDMDSHRLLYLPPKYKSAIPMSKFRVLLAEAITAKQNNLESEAKIQDITP 217 Query: 177 LPVP--------AIRLTGPVT---PSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKE 225 P RL P+ P F + ++ +F GE+ L ++ + Sbjct: 218 PLNPEQLSDLGNKPRLDSPLPSEIPKLNALFTEEEIAKLNFIFQGGERRTEDYLNEYREA 277 Query: 226 KVYYYVEQRD-IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNE 284 ++ D P +SP+L G ++PR +N L + D L Sbjct: 278 RLRDVSGDEDASPIAAKAMGISPHLRFGCITPRHLFNFLVKTIKDANYSRIK-INKVLAG 336 Query: 285 LIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWN-KDSHLLQAWKQGYTGFPIIDAAMRQL 343 ++ R+F + I W+ ++ +++ TGFP DAA+ QL Sbjct: 337 IMARDFALQVSQLQTIPERIISLNKICLPIPWDKNNNEIVEKLTDAQTGFPFFDAAITQL 396 Query: 344 NTIGWMHNRLRMITASFLVKD-LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDS 402 T G++ N + A+F+ L V W G+ +F L+ DLA + W A+ + + Sbjct: 397 KTEGYVINEVSEALATFVTNSLLWVSWEEGQNFFSQHLICFDLAMSTHSWLEASGSTMVT 456 Query: 403 VPYFRIFNP-TIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND------LSLN 455 +P K+ DP G +I+ +LP+ N P ++IH P + + + ++ Sbjct: 457 GRQKSYQDPLLFVSKKLDPNGEYIKRYLPKFINFPIEFIHKPGNASLEAQQAANCVIDID 516 Query: 456 YPLPIVDHK 464 YP P+ +++ Sbjct: 517 YPKPLFEYE 525 >gi|156752080|gb|ABU93792.1| cryptochrome 3 [Carassius auratus] Length = 237 Score = 201 bits (510), Expect = 3e-49, Method: Composition-based stats. Identities = 77/231 (33%), Positives = 107/231 (46%), Gaps = 8/231 (3%) Query: 208 FPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGT----SQLSPYLSIGVLSPRQCWNRL 263 + GE AL L K K + +R Q + LSPYL G LS R + L Sbjct: 10 WKGGETEALERLNKHLDRKAWVANFERPRITAQSLFASPTGLSPYLRFGCLSCRVFYYNL 69 Query: 264 KEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLL 323 E ++ L + S S +L+WREF+ P+ + P +I W+ + L Sbjct: 70 WELYMKLR-RSSSPPLSLFGQLLWREFFYTAGTNNPNFDHMEG-NPICVQIPWDHNPEAL 127 Query: 324 QAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLD 382 W +G TGFP IDA M QL GW+H+ R A FL + DL + W G + F LLD Sbjct: 128 AKWAEGRTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWISWESGMKVFEELLLD 187 Query: 383 GDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELN 433 D + N G W W S +F + P G+R DP G +IR ++P+L Sbjct: 188 ADWSVNAGSWMW-LSCSAFFQQFFHCYCPVGFGRRTDPSGDYIRRYIPKLK 237 >gi|330920090|ref|XP_003298886.1| hypothetical protein PTT_09721 [Pyrenophora teres f. teres 0-1] gi|311327731|gb|EFQ93028.1| hypothetical protein PTT_09721 [Pyrenophora teres f. teres 0-1] Length = 678 Score = 199 bits (507), Expect = 7e-49, Method: Composition-based stats. Identities = 111/552 (20%), Positives = 188/552 (34%), Gaps = 119/552 (21%) Query: 1 MKATTAMSVHLVWLRNDLRITDNKALY-AACHNSD------------------------- 34 M + + L LR D+RI+DN + AA + Sbjct: 1 MSSKVPR-ILLYVLRRDVRISDNPIFHTAALQTARQTSWRNSANSDRRHRDDSLTSEHGG 59 Query: 35 ---AKVIAVFIATPEQWRQHGI----------------------SARQSHFIYASLLQVQ 69 ++ V++ + Q G + FI + ++ Sbjct: 60 ASFTHLLPVYVWSANQIEVSGFLPASTPSPYPEARSAVAQVWRTGPHRVQFIADGVWDLK 119 Query: 70 KSLSQK--GIVF---QYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLE 124 L+ G D + W + ++ ++ E + + L Sbjct: 120 NKLAGLDCGSGLEQRVGRLTEVVSDILNWYSKDENEGVISGVWMTEDDATEEKQEEAELA 179 Query: 125 K-RLQHRVICKSFDDS--VLLPPGSILNHALQMYKVYTPFRKALI--------------- 166 + QH + K + D + ++ + VYT FRKA Sbjct: 180 EITKQHGIDFKVWKDEKFYIDDRDLPYDNIADLPNVYTTFRKAFEPLRDRPRETLPTPSQ 239 Query: 167 ----------QNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPM----FPIGE 212 Q + SL L P+ P D F GE Sbjct: 240 LPPLPPSIPPQKEPFSIPSSLADLKKALLSPLEKDPAYTLKMPPKWPTDAQSAHPFSGGE 299 Query: 213 QNALHILRKFC-KEKVYYYVEQRD-IPAIQGTSQLSPYLSIGVLSPRQCWNRLK------ 264 L + + Y + R+ + + +++LS YL+ G ++ RQ + Sbjct: 300 SAGLQRIAHLVASGAMGSYKQTRNGMLGLDFSTKLSAYLAQGHITARQVHWAMFDFEEGR 359 Query: 265 ---EEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCM--------------GKPF 307 E+ G + EL+WR++ R M + K + Sbjct: 360 GPGEKRHAYGQGENEGTAAVRFELLWRDYMRLCMRKFGHKMFALYGIQDRGAKGSQHKKW 419 Query: 308 IPWTEKIEWNKDS----HLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363 + E ++ + + ++ G TG +IDA+ R+L G+ NR R ASFL Sbjct: 420 KKLHKSGEDGENPQKTMEIFERFRSGRTGVGLIDASNRELFVTGYTSNRARQNVASFLSS 479 Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423 L +DWRIG E++ L+D D ASN G WQ+ A GND R+FNP Q +D +G Sbjct: 480 HLNIDWRIGAEWYECFLVDYDAASNWGNWQYVAGVGNDPRQ-GRVFNPVKQALDYDKRGE 538 Query: 424 FIRHWLPELNNV 435 +I+ W+PEL ++ Sbjct: 539 YIKAWVPELRDI 550 >gi|465501|sp|Q05380|YAT1_SYNP1 RecName: Full=Uncharacterized 31.6 kDa protein in atpI 5'region; AltName: Full=URF1 gi|480494|pir||S36967 hypothetical protein 1 (uncI 5' region) - Synechococcus sp. (PCC 6716) gi|49221|emb|CAA49877.1| unnamed protein product [Synechococcus sp.] Length = 284 Score = 199 bits (506), Expect = 8e-49, Method: Composition-based stats. Identities = 74/284 (26%), Positives = 115/284 (40%), Gaps = 8/284 (2%) Query: 10 HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69 HL W R DLR+ DN LYAA ++ V+ VF P + ++A + ++ L ++ Sbjct: 6 HLFWHRRDLRLADNLGLYAARQHTPT-VVGVFCFDPALLQGQDVAAVRVAYLLGCLQALK 64 Query: 70 KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH 129 ++ Q+G Q E + + T + ++ E RD+++ L Sbjct: 65 EAYQQRGGCLLMVQGDPRQVIPEVATTL----KATAVHWHEDVEPYARERDRVVAATLND 120 Query: 130 RVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188 I D +L PP ++ Q Y VYTPF + A + P A + Sbjct: 121 LGIAVHRQWDQLLHPPSAVQTQQGQPYTVYTPFWRNWSALPKAAPVPPPPDFAPLEATEI 180 Query: 189 TPSNIPRFFDYPFQAIDPM-FPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSP 247 +P D F + GE A L F + +Y Y EQR+ P GT+ LSP Sbjct: 181 ASIPLPSTHDLGFDWSGELILAPGEAAAAQQLAHFSQHAIYEYGEQRNYPGRPGTALLSP 240 Query: 248 YLSIGVLSPRQCWNRLKEEFVDLLI-KPKSGAFSWLNELIWREF 290 L GV+ R W + + ++ +W EL WREF Sbjct: 241 ALKFGVIGIRTVWAASEAALEHARSDEARASIRTWQQELAWREF 284 >gi|46129334|ref|XP_389028.1| hypothetical protein FG08852.1 [Gibberella zeae PH-1] gi|97047717|sp|Q4I1Q6|CRYD_GIBZE RecName: Full=Putative cryptochrome DASH Length = 678 Score = 199 bits (506), Expect = 9e-49, Method: Composition-based stats. Identities = 111/527 (21%), Positives = 189/527 (35%), Gaps = 93/527 (17%) Query: 11 LVWLRNDLRITDNKALYAAC--HNSDAKVIAVFIATPEQWRQHGI--------------- 53 + LR DLR TDN L+ + ++ ++I P Q G Sbjct: 8 VYLLRRDLRATDNPILHHLATSDHGFTHLLPIYILPPHQIETSGFVVEGQKSPYPLAKSQ 67 Query: 54 -------SARQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQR-VTK 105 ++ F + V+K+ G D + S + + Sbjct: 68 VGRFWRCGPLRAKFQAECIWDVKKNFENIGSGMLIRIGKFDDVLKHLIKSLNEDHQSIDT 127 Query: 106 LFYNRQYEINEVRRDKLLEKRL-QHRVICKSFDDSVLL--------------------PP 144 ++ + E+ + + + K + D Sbjct: 128 VWMTEEPSKEELDDQTAVASVCSKEGIGFKLWHDEKYFIDEKTQEPLRERPRPPLPRPQA 187 Query: 145 GSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAI 204 GS+ + + PFR + + L PV A ++ P F ++ Sbjct: 188 GSLPSFPSWIPPQQAPFRIPDDYDEFER-LLLEPVKAPIISDPPQ-------FPEGAKSA 239 Query: 205 DPMFPIGEQNALHILRKFCK-EKVYYYVEQRD-IPAIQGTSQLSPYLSIGVLSPRQCWNR 262 P F GE A L K + Y E R+ + + +++LS +L++G ++ R Sbjct: 240 HP-FKGGETPAWDRLYHLIKSGAMTTYQETRNGLLGTEYSTKLSAFLAMGTITARSIHAE 298 Query: 263 LKE----------EFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG-------- 304 L + G + EL+WR++ R + + Sbjct: 299 LVKFEDGSEESYSRGFGFGKGENEGTRAVRFELLWRDYMRLCTFKFRTRLFKIDGFKGAS 358 Query: 305 -----KPFIPWTEKIEWNKDS------HLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRL 353 K E E +++ ++ W +G TG ++DA+ R+L G+ NR Sbjct: 359 GNYTKKWLTDREEDAEPDQNPTPAQVKDMIDRWIRGTTGMGLVDASQRELQLTGYTSNRA 418 Query: 354 RMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTI 413 R AS+L K L +DWR+G EY+ L+D D SN G WQ+ AS GND P R FN Sbjct: 419 RQNVASYLTKSLGIDWRLGAEYYEQSLIDYDTHSNWGNWQYQASCGND--PRSRSFNQVK 476 Query: 414 QGKRFDPQGTFIRHWLPELNNVPT-QYIHA----PHSWLDKNDLSLN 455 Q +D G F R W+ E+ ++ +++ P L+K+ LS N Sbjct: 477 QAFDYDQDGRFTRTWVNEVKSIDRLEHVFQICTCPKQELEKHGLSDN 523 >gi|77963990|gb|ABB13336.1| cryptochrome 2 [Hordeum vulgare subsp. vulgare] Length = 350 Score = 199 bits (505), Expect = 1e-48, Method: Composition-based stats. Identities = 64/185 (34%), Positives = 100/185 (54%), Gaps = 9/185 (4%) Query: 302 CMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFL 361 + + + W D ++W+QG TG+P++DA MR+L GW HNR+R+I +SF Sbjct: 1 THERSLLGNLKHYPWRADEDRFKSWRQGMTGYPLVDAGMRELWATGWTHNRIRVIVSSFA 60 Query: 362 VKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQ 421 VK LL+ W G +YF LLD D+ S+ GWQ+ + D R+ NP +QG+++DP Sbjct: 61 VKFLLIPWTWGMKYFWDVLLDADIESDILGWQYISGCLPDGHELGRLDNPEVQGQKYDPD 120 Query: 422 GTFIRHWLPELNNVPTQYIHAPHSWLDK------NDLSLNYPLPIVDHKKACH---HTLN 472 G ++R W+PEL +P ++IH P +L NYP+PIV+ A ++ Sbjct: 121 GEYVRTWIPELARMPGEWIHHPWDAPSSILEVAGVELGFNYPMPIVELHTARECLDDAIS 180 Query: 473 QYYAA 477 + Sbjct: 181 TMWQL 185 >gi|90085022|dbj|BAE91252.1| unnamed protein product [Macaca fascicularis] Length = 278 Score = 199 bits (505), Expect = 1e-48, Method: Composition-based stats. Identities = 63/180 (35%), Positives = 91/180 (50%), Gaps = 8/180 (4%) Query: 308 IPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK-DLL 366 P +I W+K+ L W +G TGFP IDA M QL GW+H+ R A FL + DL Sbjct: 4 NPICVQIPWDKNPEALAKWAEGRTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLW 63 Query: 367 VDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIR 426 + W G + F LLD D + N G W W S + +F + P G+R DP G +IR Sbjct: 64 ISWEEGMKVFEELLLDADWSINAGSWMW-LSCSSFFQQFFHCYCPVGFGRRTDPNGDYIR 122 Query: 427 HWLPELNNVPTQYIHAPHSWLD------KNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQ 480 +LP L P +YI+ P + + K + +NYP P+V+H +A + + +Q Sbjct: 123 RYLPVLRGFPAKYIYDPWNAPEGIQKVAKCLIGINYPKPMVNHAEASRLNIERMKQIYQQ 182 >gi|77963986|gb|ABB13334.1| cryptochrome 2 [Hordeum vulgare subsp. vulgare] gi|77963988|gb|ABB13335.1| cryptochrome 2 [Hordeum vulgare subsp. vulgare] Length = 350 Score = 198 bits (504), Expect = 1e-48, Method: Composition-based stats. Identities = 64/185 (34%), Positives = 100/185 (54%), Gaps = 9/185 (4%) Query: 302 CMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFL 361 + + + W D ++W+QG TG+P++DA MR+L GW HNR+R+I +SF Sbjct: 1 THERSLLGNLKHYPWRADEDRFKSWRQGMTGYPLVDAGMRELWATGWTHNRIRVIVSSFA 60 Query: 362 VKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQ 421 VK LL+ W G +YF LLD D+ S+ GWQ+ + D R+ NP +QG+++DP Sbjct: 61 VKFLLIPWTWGMKYFWDVLLDADIESDILGWQYISGCLPDGHELGRLDNPEVQGQKYDPD 120 Query: 422 GTFIRHWLPELNNVPTQYIHAPHSWLDK------NDLSLNYPLPIVDHKKACH---HTLN 472 G ++R W+PEL +P ++IH P +L NYP+PIV+ A ++ Sbjct: 121 GEYVRTWIPELARMPGEWIHHPWDAPSSILEVAGVELGFNYPMPIVELHMARECLDDAIS 180 Query: 473 QYYAA 477 + Sbjct: 181 TMWQL 185 >gi|74025462|ref|XP_829297.1| DNA photolyase [Trypanosoma brucei TREU927] gi|70834683|gb|EAN80185.1| DNA photolyase, putative [Trypanosoma brucei] Length = 848 Score = 198 bits (504), Expect = 1e-48, Method: Composition-based stats. Identities = 106/548 (19%), Positives = 175/548 (31%), Gaps = 108/548 (19%) Query: 16 NDLRITDN----KALYAACHNSDAKVIAVFIATPEQWRQHGI-------SARQSHFIYAS 64 ND+R+ DN A A VIAV + + Q S ++ F + Sbjct: 214 NDMRVHDNYALALAATRAEAAGGLPVIAVTVVDYRMFAQPSAVGGFFRQSPMRARFFLET 273 Query: 65 LLQVQKSL-SQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLL 123 L ++ L + I D + ++ +F QY +E + Sbjct: 274 LAALRYKLERELRIPLLVRCGRPEDH----IPRLVVECGAIDVFLTTQYTPHEKEVHNDI 329 Query: 124 EKRLQHRVIC-------------------------------------------KSFDDSV 140 + + R S + Sbjct: 330 VEAITQRRWVSRDPTAGYKATEHDATVVHPFGVTSASTKVGVKESRLTAAPVAHSVWQTT 389 Query: 141 LLP------------------PGSILNHALQMYKVYTPFRKALIQNLVQADLRSL----- 177 L+ + ++ + L + DL Sbjct: 390 LVHIDDLPVPVASMVEGERWYHDDVTTANIRPTAAFDRCINRLSDLPARGDLLPTTGELS 449 Query: 178 ---PVPAIRLTGP----VTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKE----K 226 P P R P + + F + A P GE A+ + + + Sbjct: 450 GLEPPPLYRGRAPTLVELGYGSPEAFIEEEVIATQSSHPPGEDAAIERVLDWLMDGGMTS 509 Query: 227 VYYYVEQR---DIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKP--KSGAFSW 281 + Y R Q S+LSPYLS G LSPR+ + L+ + L + Sbjct: 510 MLRYGRDRRTNTKMYSQRLSRLSPYLSCGALSPRRFYEELRRFTSEHLRDNFVQQQYREA 569 Query: 282 LNELIWREFYRHLMAFYPSVCMGK--PFIPWTEKI-EWNKDSHLLQAWKQGYTGFPIIDA 338 L L R+++ + Y + + P T+ I +W D ++Q W G TG P DA Sbjct: 570 LLRLSRRDYWHWMGLRYGPLLFYEYGPRPEHTDDIADWRHDPKIVQKWCAGLTGIPFADA 629 Query: 339 AMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAAST 398 AMR+L G++ + R L + DWR+G E+ +D D G + + Sbjct: 630 AMRELTLTGFVADEGRQGLIWLLSRGYGQDWRLGAEWLERCSIDYDPFVCYGNCAYYSEL 689 Query: 399 GNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKN------DL 452 D + N D G +++ WLP+L+ +P YIH PH ++ L Sbjct: 690 VRDDFGET-VRNIHWLAHHHDQTGIYVKKWLPQLSKIPPVYIHRPHVLTERMQAMHGVQL 748 Query: 453 SLNYPLPI 460 NYP P+ Sbjct: 749 GKNYPYPL 756 >gi|51948354|gb|AAU14281.1| cryptochrome-like protein 2 [Ostreococcus tauri] Length = 548 Score = 198 bits (504), Expect = 1e-48, Method: Composition-based stats. Identities = 101/414 (24%), Positives = 158/414 (38%), Gaps = 41/414 (9%) Query: 104 TKLFYNRQYEINEVRRDKLLE-KRLQHRVICKSFDDSVLLPPGSILNH---ALQMYKVYT 159 T++F +++YE D+ + V +L P + + Sbjct: 1 TRVFASKRYEPENAEADERASVEMAVRGVELVRTRGFLLFEPSEVRIDVAARDGYFGTLM 60 Query: 160 PFRKALIQNLVQADLRSLPVPAIRL----TGPVTPSNIPRFFDYP-----------FQAI 204 PF A + +R+ T D I Sbjct: 61 PFVHAAERTCGDPGKPKPAPVDVRMVDLGTESDHEWEQIGLEDLGVAPASDRRVDWSAGI 120 Query: 205 DPMFPIGEQNALHILRKFCKEKVYYYVEQR---DIPAIQGTSQLSPYLSIGVLSPRQCWN 261 + I E A+ +F + + + D A S+LSPYL G++SPR ++ Sbjct: 121 RADWDISEGGAVETWSQFTAVGLDRFEAEHGRADPEAGVTVSRLSPYLRFGMISPRTVYH 180 Query: 262 RLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEW---NK 318 L + K+ + ++ + L RE + +P + E W ++ Sbjct: 181 DL------VKKDGKNISKTFWHRLYRRELAYWQLHHWPDLPKT-SVRSHYENRAWLSGDE 233 Query: 319 DSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMS 378 L+ W++G TGFP++D MR+L GWMH RMITA+FLV L V W G ++FM Sbjct: 234 ADEALRRWQRGETGFPVVDCGMRRLWRTGWMHQTERMITATFLVDYLGVHWTRGADWFMR 293 Query: 379 QLLDGDLASNNGGWQWAASTGNDSVPYFR-IFNPTIQGKRFDPQGTFIRHWLPELNNVPT 437 L+D D A N+ WQ A +G D +F P + DP G I W+PEL +P Sbjct: 294 TLVDADEAINSMMWQNAGKSGLDQWDFFEGTLAPDGSARAHDPHGDAIARWIPELAALPR 353 Query: 438 QYI-HAPHSWLDKN------DLSLNYPLP-IVDHKKACHHTLNQYYAAKKQSLL 483 Y+ H P +L YP IVD +A L+ + L+ Sbjct: 354 GYLRHRPWEASKATLAECDVELGSTYPRRMIVDLDRARQRMLDDVTTIRHAELV 407 >gi|261335266|emb|CBH18260.1| DNA photolyase, putative [Trypanosoma brucei gambiense DAL972] Length = 848 Score = 198 bits (504), Expect = 2e-48, Method: Composition-based stats. Identities = 106/548 (19%), Positives = 175/548 (31%), Gaps = 108/548 (19%) Query: 16 NDLRITDN----KALYAACHNSDAKVIAVFIATPEQWRQHGI-------SARQSHFIYAS 64 ND+R+ DN A A VIAV + + Q S ++ F + Sbjct: 214 NDMRVHDNYALALAATRAEAAGGLPVIAVTVVDYRMFAQPSAVGGFFRQSPMRARFFLET 273 Query: 65 LLQVQKSL-SQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLL 123 L ++ L + I D + ++ +F QY +E + Sbjct: 274 LAALRYKLERELRIPLLVRCGRPEDH----IPRLVVECGAIDVFLTTQYAPHEKEVHNDI 329 Query: 124 EKRLQHRVIC-------------------------------------------KSFDDSV 140 + + R S + Sbjct: 330 VEAINQRRWVSRDPTAGYKAIEHDATVVHPFGATSASTKVGVKESRLTAAPVAHSVWQTT 389 Query: 141 LLP------------------PGSILNHALQMYKVYTPFRKALIQNLVQADLRSL----- 177 L+ + ++ + L + DL Sbjct: 390 LVHIDDLPVPVASMVEGERWYHDDVTTANIRPTAAFDRCINRLSDLPARGDLLPTTGELS 449 Query: 178 ---PVPAIRLTGP----VTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKE----K 226 P P R P + + F + A P GE A+ + + + Sbjct: 450 GLEPPPLYRGRAPTLVELGYGSPEAFIEEEVIATQSSHPPGEDAAIERVLDWLMDGGMTS 509 Query: 227 VYYYVEQR---DIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKP--KSGAFSW 281 + Y R Q S+LSPYLS G LSPR+ + L+ + L + Sbjct: 510 MLRYGRDRRTNTKMYSQRLSRLSPYLSCGALSPRRFYEELRRFTSEHLRDNFVQQQYREA 569 Query: 282 LNELIWREFYRHLMAFYPSVCMGK--PFIPWTEKI-EWNKDSHLLQAWKQGYTGFPIIDA 338 L L R+++ + Y + + P T+ I +W D ++Q W G TG P DA Sbjct: 570 LLRLSRRDYWHWMGLRYGPLLFYEYGPRPEHTDDIADWRHDPKIVQKWCAGLTGIPFADA 629 Query: 339 AMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAAST 398 AMR+L G++ + R L + DWR+G E+ +D D G + + Sbjct: 630 AMRELTLTGFVADEGRQGLIWLLSRGYGQDWRLGAEWLERCSIDYDPFVCYGNCAYYSEL 689 Query: 399 GNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKN------DL 452 D + N D G +++ WLP+L+ +P YIH PH ++ L Sbjct: 690 VRDDFGET-VRNIHWLAHHHDQTGIYVKKWLPQLSKIPPVYIHRPHVLTERMQAMHGVQL 748 Query: 453 SLNYPLPI 460 NYP P+ Sbjct: 749 GKNYPYPL 756 >gi|148261329|ref|YP_001235456.1| deoxyribodipyrimidine photo-lyase [Acidiphilium cryptum JF-5] gi|146403010|gb|ABQ31537.1| deoxyribodipyrimidine photo-lyase family protein (cryptochrome) [Acidiphilium cryptum JF-5] Length = 389 Score = 198 bits (503), Expect = 2e-48, Method: Composition-based stats. Identities = 72/262 (27%), Positives = 107/262 (40%), Gaps = 9/262 (3%) Query: 210 IGEQNALHILRKFCKEKVYYYVEQRDIP--AIQGTSQLSPYLSIGVLSPRQCWNRLKEEF 267 G AL L F + Y P S+LSPY + G +S R+ Sbjct: 46 PGRAAALATLGSFLATRGEDYTRAMSSPVSGEAACSRLSPYFAYGCVSIREAAQAAWRRQ 105 Query: 268 VDLLIKPKSGA--FSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQA 325 ++ + GA S++ L W + + P +PF E + D L A Sbjct: 106 REVPAASRWGAALRSFIARLHWHCHFIQKLEAEPE-AEWRPFARIYEGMRPPADPARLAA 164 Query: 326 WKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDL 385 W +G TG+P IDAAMR L GW++ R+R + SF DL + W+ D + Sbjct: 165 WAEGRTGYPFIDAAMRYLAAHGWINFRMRAMLMSFASHDLFLPWQESGLVLARLFTDYEP 224 Query: 386 ASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHS 445 + Q +G + R+++P QG DP G IR +PEL V +H P Sbjct: 225 GIHWPQCQMQ--SGETGINTVRVYSPVKQGFDQDPAGRLIRLHVPELAAVAGALVHEPWR 282 Query: 446 W--LDKNDLSLNYPLPIVDHKK 465 ++ L YP IV H++ Sbjct: 283 LDAAERARLCPEYPARIVIHEE 304 >gi|313231152|emb|CBY19150.1| unnamed protein product [Oikopleura dioica] Length = 251 Score = 197 bits (501), Expect = 3e-48, Method: Composition-based stats. Identities = 89/244 (36%), Positives = 135/244 (55%), Gaps = 15/244 (6%) Query: 241 GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPS 300 GT+++S +L G +S R+ + R E F + + +L++R+FY + + P Sbjct: 6 GTTKMSAHLKFGTVSIREMYWRTAELFGERHD--------LIRQLVFRDFYLKIYSHNPE 57 Query: 301 VCMGKPFIPWTE-KIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITAS 359 + G + +I W+ D L AW +G TGFP++DAA RQL IGW HNR+RM+T Sbjct: 58 LQRGTALQAGVDERIPWSDDEKLWTAWCEGMTGFPLVDAAQRQLKEIGWQHNRMRMLTGC 117 Query: 360 FLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFR-IFNPTIQGKRF 418 L K ++DWR G ++F L+D D+ +N GW W +STG D+VPYFR FNP IQ K+F Sbjct: 118 VLTKYFMIDWRKGMKFFYQNLVDADVFNNTAGWGWVSSTGPDAVPYFRPPFNPWIQSKKF 177 Query: 419 DPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLN-----YPLPIVDHKKACHHTLNQ 473 D +G +I+ ++PEL +V +H + N YP P+V H +A + + Sbjct: 178 DLEGKYIKQYIPELADVSPADLHKWGDASIRAKYKKNKKVQAYPAPVVKHDEASKNAVYL 237 Query: 474 YYAA 477 Y A Sbjct: 238 YKKA 241 >gi|157130453|ref|XP_001655724.1| DNA photolyase [Aedes aegypti] gi|108881984|gb|EAT46209.1| DNA photolyase [Aedes aegypti] Length = 321 Score = 196 bits (499), Expect = 5e-48, Method: Composition-based stats. Identities = 87/313 (27%), Positives = 128/313 (40%), Gaps = 26/313 (8%) Query: 146 SILNHALQMYKVYTPFRKALIQNLVQ-ADLRSLPVPAIRLT-----------GPVTPSNI 193 SI ++ P Q ++ D P PAI L + Sbjct: 13 SIAFRIIEKNGGRAPLTYHQFQAIIASMDAPPQPEPAITLDTIANATTPQYEDHDDKYGV 72 Query: 194 PRFFDYPFQ--AIDPM-FPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGT----SQLS 246 P + F+ + P+ + GE AL L + + K + R Q + LS Sbjct: 73 PTLEELGFETEGLKPLIWVRGETEALARLERHLERKAWVASFGRPKMTPQSLLARQTGLS 132 Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP 306 PYL G LS R + +L + + IK S +L+WREF+ P+ Sbjct: 133 PYLRFGCLSTRLFYYQLTDLYKK--IKKACPPLSLYGQLLWREFFYCAATKNPNFDKM-A 189 Query: 307 FIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK-DL 365 P +I W++++ L W G TGFP IDA M QL GW+H+ R A FL + DL Sbjct: 190 GNPICVQISWDRNAEALAKWASGQTGFPWIDAIMTQLREEGWIHHLARHAVACFLTRGDL 249 Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425 + G + F LLD D + N G W S + +F + P G++ DP G +I Sbjct: 250 WISCEEGMKVFEELLLDADWSVNAGMW---LSCSSFFQQFFHCYCPVKFGRKADPNGDYI 306 Query: 426 RHWLPELNNVPTQ 438 R +LP L V + Sbjct: 307 RRYLPVLKEVNKK 319 >gi|326523445|dbj|BAJ92893.1| predicted protein [Hordeum vulgare subsp. vulgare] Length = 420 Score = 196 bits (498), Expect = 7e-48, Method: Composition-based stats. Identities = 77/222 (34%), Positives = 119/222 (53%), Gaps = 10/222 (4%) Query: 269 DLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQ 328 + + G +L + RE+ R+L +P KP + W + + W+Q Sbjct: 9 ESNRDGEEGCSLFLRSIGLREYSRYLAFNHP-CSHEKPLLAHLRFFPWVVNEVYFKVWRQ 67 Query: 329 GYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASN 388 G TG+P++DA MR+L GW+H+R+R++ +SF VK L + WR G +YF LLD DL S+ Sbjct: 68 GRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESD 127 Query: 389 NGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLD 448 GWQ+ + + D RI NP +G +FDP G ++R WLPEL +PT++IH P + Sbjct: 128 ALGWQYISGSLPDGRELDRIDNPQFEGYKFDPYGEYVRRWLPELARLPTEWIHHPWDAPE 187 Query: 449 KN------DLSLNYPLPIVDHKKACHH---TLNQYYAAKKQS 481 +L NYPLPIV+ +A L++ + + S Sbjct: 188 SVLQAAGIELGSNYPLPIVELDEAKSRLQDALSEMWELEAAS 229 >gi|320589803|gb|EFX02259.1| DNA photolyase [Grosmannia clavigera kw1407] Length = 893 Score = 194 bits (493), Expect = 3e-47, Method: Composition-based stats. Identities = 117/590 (19%), Positives = 199/590 (33%), Gaps = 145/590 (24%) Query: 11 LVWLRNDLRITDNKALYAACHN----SDAKVIAVFIATPEQWRQHGI------------- 53 + LR DLR+ DN+ L+ N + ++ +++ Q G Sbjct: 24 IYILRRDLRVADNRILHEVSTNPTKYNFTHMLPLYVFAANQIEVSGFIPRSSNTTSPYPE 83 Query: 54 -----------SARQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQ-Q 101 ++ FI L V++SL G + + + Sbjct: 84 AKSKIVGYWRCGPHRARFISECLADVKQSLESLGSGLSIRVGMLPEVVERMIAGLTAEGH 143 Query: 102 RVTKLFYNRQYEINEVRRDKLLEKRLQHRVICKSFD------------------------ 137 RV+ ++ + E + + + I Sbjct: 144 RVSAVWMAEEDGSEEEADENEIGTMCEELGIHYYLWPNEKHFIAEYVPSIPVPFTISGVY 203 Query: 138 -----DSVLLPP-GSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVP----------- 180 + ++P + + Q K P R+ + L +LP Sbjct: 204 TDKPSNHAIVPSLDELPDTYTQYQKKCEPLRQRPAEPLPVPRASTLPTYLPAPTQSLPFV 263 Query: 181 --------AIRLTGPVTPSNIPRFFDYPFQ-----AIDPMFPIGEQNALHILRK-FCKEK 226 L P+ + F Y + + GE A LR F E Sbjct: 264 IPDDKDGIEAALIAPLLRRDCDNRFLYEVKICKKVPWATILEGGETEANKRLRDLFLPEN 323 Query: 227 ---VYYYVEQRD-IPAIQGTSQLSPYLSIGVLSPRQCWNRLKE----------EFVDLLI 272 V Y E++D + Q +S+LS YLS G L+ R L + Sbjct: 324 AGLVAGYAEKKDGLLGRQFSSRLSGYLSQGCLTARLVHQALVQYEDGSNDAMAAAEGFGG 383 Query: 273 KPKSGAFSWLNELIWREFYRHLMAFY---------------------------------- 298 G+ + EL+WR+F R + Sbjct: 384 GENEGSHALRKELLWRDFMRLNGHRFKDVIDHQEGFRGKLGRDIVYKRETSADSEEEEEE 443 Query: 299 ------PSVCMGKPFIPWTEKIEWNKDS------HLLQAWKQGYTGFPIIDAAMRQLNTI 346 P++ F P + +W+++ + L+ W+ G TG +IDA+ R+L Sbjct: 444 PELPEKPTMQKFTWFSPRADMADWDQEQSPEQTANYLRRWQLGTTGLSLIDASQRELMYT 503 Query: 347 GWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYF 406 G+ NR RM+ ++F K + +DWR G E++ L+D D+ SN G WQ+AA GND Sbjct: 504 GFTSNRARMVVSNFFAKRMQIDWRCGAEWYEMMLMDYDVYSNWGNWQYAAGVGNDPRGIE 563 Query: 407 RIFNPTIQGKRFDPQGTFIRHWLPELNNVPT-QYIHAPHSWLDKNDLSLN 455 R NP Q +DP+G ++R WLPE+ + +++ P + S N Sbjct: 564 RDLNPVKQAFDYDPKGLYVRAWLPEVARLKELRHLFQPSAAPPSAVTSAN 613 >gi|329120351|ref|ZP_08249019.1| deoxyribodipyrimidine photo-lyase [Neisseria bacilliformis ATCC BAA-1200] gi|327462692|gb|EGF09015.1| deoxyribodipyrimidine photo-lyase [Neisseria bacilliformis ATCC BAA-1200] Length = 456 Score = 193 bits (491), Expect = 5e-47, Method: Composition-based stats. Identities = 118/460 (25%), Positives = 183/460 (39%), Gaps = 45/460 (9%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 L+ +LR+ N L A AV+ + RQ +F+ +L ++ Sbjct: 33 LLHFTRNLRLAANP-LLHAVQYG-IPAAAVYFL------PAHSNPRQMYFLSQTLAELSD 84 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130 L++ GI + S + + Y + +T R + R + E+ L Sbjct: 85 GLAEYGIPLHVFEGSPTEHLNALMARYPTARLITAQHI-RLPDDPSCRVQYVQEEILPLP 143 Query: 131 VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTP 190 V + D S+ PP ++ + + ++ + D R+ + P Sbjct: 144 VRRTTLDTSL--PPDLVVYRD--------AWLRKAAKSAEETDSTPDKAAVRRVQQHLPP 193 Query: 191 SNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLS 250 A GE A R F K+ YY RD PA +GTSQLS L Sbjct: 194 ELRDAPPPPSVSAQTLPQTGGETAAWTAWRAF-TPKLPYYGLMRDFPAQKGTSQLSAALR 252 Query: 251 IGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPF--- 307 G+L R+ ++ + A WL+ + + ++ R M F + + Sbjct: 253 FGLLPVRRLARTVQ-------VMGGESAEKWLHSVFYGDYCRRRMPFAAGLWAWEDGALV 305 Query: 308 ------IPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFL 361 + + W++G TG P+IDAAMR L+ GWMH RLR + A+F Sbjct: 306 EIRPPAAAPAMPALSEEQAAAFDLWRRGRTGVPLIDAAMRLLDGGGWMHPRLRSLCAAFA 365 Query: 362 VKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQ 421 V L + GE F + L D D ++N GWQ AA+ R+ NP + + DP Sbjct: 366 VSALGIPQAAGEACFAAALTDYDYSANRVGWQTAAAA--------RMKNPFAESQNLDPG 417 Query: 422 GTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIV 461 G FIR LPE+ ++P IHAPH L+ YP PIV Sbjct: 418 GRFIRSHLPEIAHLPDNIIHAPHRAGSGVSLN-GYPAPIV 456 >gi|48716245|dbj|BAD23781.1| putative cryptochrome 2 [Oryza sativa Japonica Group] Length = 298 Score = 192 bits (488), Expect = 9e-47, Method: Composition-based stats. Identities = 66/298 (22%), Positives = 117/298 (39%), Gaps = 21/298 (7%) Query: 10 HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69 +VW R DLRI DN AL +A D V+ VFI P Q ++ SL + Sbjct: 7 TVVWFRRDLRIDDNPALASAAR--DGAVLPVFIWCPADEGQFYPGRCSRWWLKQSLPHLS 64 Query: 70 KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH 129 +SL G + + ++E L T+L YN Y+ + RD ++K L Sbjct: 65 QSLESLGCPLVLIRAES---TLEALLRCIDSVGATRLVYNHLYDPVSLVRDDKIKKELSA 121 Query: 130 RVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188 I +SF+ +L P I + + + + + + ++ + A P + + G + Sbjct: 122 LGISIQSFNGDLLYEPWEIYDDSGLAFTTFNMYWEKCMELPIDASPSLAPWKLVPVPG-L 180 Query: 189 TPSNIPRFFDYPFQAIDP----------MFPIGEQNALHILRKFCKEKVYYYVEQRDIPA 238 D ++ + G +NA +L +F + Y + Sbjct: 181 ESVRSCSVDDLGLESSKDEESSNALLMRAWSPGWRNAEKMLEEFVSHGLLEYSKHGMKVE 240 Query: 239 IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFS----WLNELIWREFYR 292 TS LSPYL G +S R+ + ++ + + + S A ++ + RE+ R Sbjct: 241 GATTSLLSPYLHFGEVSVRKVYQLVRMQQIKWENEGTSEAEESIHFFMRSIGLREYSR 298 >gi|20336481|gb|AAM19303.1| cryptochrome-2 [Gallus gallus] Length = 266 Score = 192 bits (488), Expect = 1e-46, Method: Composition-based stats. Identities = 59/180 (32%), Positives = 90/180 (50%), Gaps = 8/180 (4%) Query: 308 IPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK-DLL 366 P +I W+K+ L W +G TGFP IDA M QL GW+H+ R A FL + DL Sbjct: 5 NPICIQIPWDKNPEALAKWAEGKTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLW 64 Query: 367 VDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIR 426 + W G F LLD D + N G W W S +F + P G+R DP G +++ Sbjct: 65 ISWESGVRVFDELLLDADFSVNAGSWMW-LSCSAFFQQFFHCYCPVGFGRRTDPSGDYVK 123 Query: 427 HWLPELNNVPTQYIHAPHSWLD------KNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQ 480 +LP+L P++YI+ P + + K + ++YP P+V+H + + + +Q Sbjct: 124 RYLPKLKGFPSRYIYEPWNAPESVQKAAKCIIGVDYPKPMVNHAETSRLNIERMKQIYQQ 183 >gi|330683891|gb|EGG95662.1| putative deoxyribodipyrimidine photo-lyase [Staphylococcus epidermidis VCU121] Length = 226 Score = 192 bits (487), Expect = 1e-46, Method: Composition-based stats. Identities = 86/209 (41%), Positives = 122/209 (58%), Gaps = 5/209 (2%) Query: 212 EQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLL 271 E+ A F + +Y + D + S L YL+ G+L R+ N L E++ Sbjct: 23 EKLARKAWDDFLNSNIAHYDKLTDDVSQDFVSGLGKYLAYGLLDIREIINDLLEDYE--- 79 Query: 272 IKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYT 331 + +++ ++I+REFY LM YP K F ++W+ + + WK+G T Sbjct: 80 -SDEKNYEAFIRDVIFREFYYVLMMQYPETAT-KSFSEKYRNMQWSYNKTHFEVWKKGQT 137 Query: 332 GFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGG 391 G+PI+DAAM++LN G+MHNRLRM+ + FL K+L +DW GEEYF L+D D ASN G Sbjct: 138 GYPIVDAAMKKLNRTGYMHNRLRMVVSQFLTKNLFIDWTWGEEYFRQYLIDYDNASNVHG 197 Query: 392 WQWAASTGNDSVPYFRIFNPTIQGKRFDP 420 WQW+ASTG D VPYFR+FNP Q +RFD Sbjct: 198 WQWSASTGTDEVPYFRMFNPIRQSERFDK 226 >gi|302745162|gb|ADL62684.1| cryptochrome 4 [Phreatichthys andruzzii] Length = 274 Score = 192 bits (487), Expect = 1e-46, Method: Composition-based stats. Identities = 76/237 (32%), Positives = 117/237 (49%), Gaps = 9/237 (3%) Query: 194 PRFFDYPFQ-AIDPMFPIGEQNALHILRKFCKEKVY--YYVEQRDIPA--IQGTSQLSPY 248 P D + D ++P GE +AL L K + + + + + R +P + ++ LSPY Sbjct: 40 PSLADLGLEVEFDVLWPGGETHALQRLDKHFQSQGWVTSFSKTRTVPNSLLPSSTGLSPY 99 Query: 249 LSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFI 308 LS+G LS R +++L + S +++WREF+ + + P+ + Sbjct: 100 LSLGCLSVRTFYHQLSSVYAQSK-NHSLPPLSLQGQVLWREFFYTVASSTPNFTKMEG-N 157 Query: 309 PWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK-DLLV 367 P +I+W D L+ W+ TGFP IDA M QL GW+H+ R A FL + DL + Sbjct: 158 PICLQIQWYHDPEALEKWRTAQTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWI 217 Query: 368 DWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424 W G + F LLD D + N G W W +++ Y RIF P G+R DPQG + Sbjct: 218 SWEEGMKVFEELLLDADYSINAGNWMWLSASAFFHK-YTRIFCPVRFGRRTDPQGQY 273 >gi|241701053|ref|XP_002411902.1| DNA photolyase, putative [Ixodes scapularis] gi|215504842|gb|EEC14336.1| DNA photolyase, putative [Ixodes scapularis] Length = 253 Score = 191 bits (485), Expect = 3e-46, Method: Composition-based stats. Identities = 73/226 (32%), Positives = 109/226 (48%), Gaps = 9/226 (3%) Query: 205 DPMFPIGEQNALHILRKFCKEKVY--YYVEQRDIPA--IQGTSQLSPYLSIGVLSPRQCW 260 D ++P GE AL L + + K + + + P + + LSPYL G LS R + Sbjct: 23 DAVWPGGETEALARLERHLERKAWVASFGSPKMTPKSLLASQTGLSPYLRFGCLSARLFY 82 Query: 261 NRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDS 320 ++L + + IK + S +L+WREF+ P+ P +I W+ ++ Sbjct: 83 HQLADLYRK--IKKSNPPLSLQGQLLWREFFYCAATRNPNFDRMHN-NPICVQIPWDVNA 139 Query: 321 HLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQ 379 L W G TG+P IDA MRQL GW+H+ R A FL + DL + W G + F Sbjct: 140 EALAKWANGQTGYPWIDAIMRQLREEGWIHHVARYAVACFLTRGDLWLSWEEGMKVFDEL 199 Query: 380 LLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425 LLD D + N G W W S + +F ++ P G++ DP G FI Sbjct: 200 LLDADWSVNAGSWMW-LSCSSFFQQFFHLYCPVRFGRKADPSGDFI 244 >gi|213613145|ref|ZP_03370971.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp. enterica serovar Typhi str. E98-2068] Length = 141 Score = 190 bits (484), Expect = 3e-46, Method: Composition-based stats. Identities = 95/141 (67%), Positives = 112/141 (79%) Query: 341 RQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGN 400 RQLN GWMHNRLRMITASFLVKDLL+DWR+GE YFMSQL+DGDLA+NNGGWQWAASTG Sbjct: 1 RQLNATGWMHNRLRMITASFLVKDLLIDWRLGERYFMSQLIDGDLAANNGGWQWAASTGT 60 Query: 401 DSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPI 460 D+ PYFRIFNPT Q +RFD G FIR WLP L ++P + IH P W +K + L+YP PI Sbjct: 61 DAAPYFRIFNPTTQRERFDRDGEFIRQWLPALRDIPGKAIHEPWRWAEKAGVVLDYPRPI 120 Query: 461 VDHKKACHHTLNQYYAAKKQS 481 V+HK+A TL+ Y AA+K + Sbjct: 121 VEHKQARIATLSAYEAARKGA 141 >gi|322817684|gb|EFZ25335.1| DNA photolyase, putative [Trypanosoma cruzi] Length = 871 Score = 190 bits (482), Expect = 5e-46, Method: Composition-based stats. Identities = 107/545 (19%), Positives = 178/545 (32%), Gaps = 106/545 (19%) Query: 16 NDLRITDNKALYAACHN----SDAKVIAVFIATPEQWRQHGI-------SARQSHFIYAS 64 ND+R+ DN L A VIAV + + Q S ++ F S Sbjct: 228 NDMRVHDNYTLALAAVRAEAAGGLPVIAVAVIDYRTFAQPSAVGGYFRQSPMRARFFLES 287 Query: 65 LLQVQKSLSQ-KGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLL 123 L +++ L + + E + ++ T +F QY +E + Sbjct: 288 LAKLRAKLEEELNVPLLIR----CGRPEEHVPRLAVECGATDVFMTTQYAPHEKNVHDTI 343 Query: 124 EKRLQHRVIC---------------------------------------KSFDDSVLLP- 143 + ++ R S + L+ Sbjct: 344 VESIKRRKWVSRDVASGLKLKTHDAAVSHPYGNCDGDREAVTAAVSPVPHSVWQTTLVHI 403 Query: 144 -----------------PGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 + +++ Y + + + +L L Sbjct: 404 DDLPVPVAAMAEGERWYHDDVTVASIRPTTPYDRYIARISSLPTRHELLPTAAERSGLAH 463 Query: 187 P-VTPSNIPRFFDYPFQ-----------AIDPMFPIGEQNALHILRKFCKEKV-----YY 229 P + +IP + A P GE A+ + + + Sbjct: 464 PPLYRGSIPTLDQLGYGNQEAFAVEEVIATQSSHPPGEHAAIERVEDWLAGGGVTSLLRH 523 Query: 230 YVEQRDIPAI--QGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKP--KSGAFSWLNEL 285 E R + Q S++SPYLS G LSPR+ + L+ + L + L L Sbjct: 524 GREHRTNVKMYSQRLSRVSPYLSNGSLSPRRFYEMLRCYTTENLRDNFVQMQYREALLRL 583 Query: 286 IWREFYRHLMAFYPSVCMGKPFIPWTEKIE----WNKDSHLLQAWKQGYTGFPIIDAAMR 341 R+ Y H M + P+ P E+ + W D ++Q W G TG P DAAMR Sbjct: 584 SRRD-YWHWMGLRYGPLLFFPYGPRPEQTDNIPDWRHDEKIVQKWCAGLTGVPFADAAMR 642 Query: 342 QLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGND 401 +L T G++ + R A L + DWR+G E+ LD D G + + + D Sbjct: 643 ELLTTGFVAHEGRQALAWLLTRGYGQDWRLGAEWLERCSLDYDPFLCYGNFAYFSELILD 702 Query: 402 SVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND------LSLN 455 + + D G +++ WLP L+ +P YIH PH + L Sbjct: 703 DFGEP-VRSVHWLAHHHDQTGIYVKKWLPLLSKIPPVYIHRPHVLTPRMQAMHGVRLGKT 761 Query: 456 YPLPI 460 YP P+ Sbjct: 762 YPYPL 766 >gi|169609250|ref|XP_001798044.1| hypothetical protein SNOG_07712 [Phaeosphaeria nodorum SN15] gi|160701810|gb|EAT85178.2| hypothetical protein SNOG_07712 [Phaeosphaeria nodorum SN15] Length = 582 Score = 190 bits (482), Expect = 5e-46, Method: Composition-based stats. Identities = 105/522 (20%), Positives = 172/522 (32%), Gaps = 144/522 (27%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDA-----------------------------KVIA 39 + L LR D+R++DN A +AA + + Sbjct: 7 IVLYILRRDIRLSDNPAFHAAAQQTQRANSRKSSPNGERRGRDDSLTSEHGGAPFTHFLP 66 Query: 40 VFIATPEQWRQHGI-----------------------SARQSHFIYASLLQVQKSLSQK- 75 V++ P+Q G ++ FI + +++ L Sbjct: 67 VYVFPPKQIETSGFLASPSDKSPYAEARSQFAKVWRTGPHRAKFIGQGVWGLKQQLENLG 126 Query: 76 -GIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHRVICK 134 G + ++EV RD Sbjct: 127 CGSGLEMRVGM----------------------------VDEVVRD-------------- 144 Query: 135 SFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPSNIP 194 + S+ + + T + D V A+R Sbjct: 145 ------FINSYSLKDGEDESKPKITGVWMTSDDGTEERD----EVKAVRKVAAENDIPFK 194 Query: 195 RFFDYPFQAIDPMFPIGEQNALHILRKFCK-EKVYYYVEQRD-IPAIQGTSQLSPYLSIG 252 + D F D GE++ L + + + Y R+ + + +++LS YL+ G Sbjct: 195 LWADEKFYIDD----GGEEHGLDRIAHLIRSGAMSSYKATRNGMLGLDFSTKLSAYLAQG 250 Query: 253 VLSPRQCWNRLKEEFVDLLIK---------PKSGAFSWLNELIWREFYRHLMAFYPSVCM 303 ++ RQ +K+ G + EL+WR++ R M + Sbjct: 251 HITARQVHWAMKDFEEGRGEGKGIAGYGKGENEGTAAVRFELLWRDYMRLCMRKFGHKMF 310 Query: 304 ----------------------GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMR 341 P + K+ Q ++ G TG +IDA+ R Sbjct: 311 ALYGIQPHRKGQGDEPIYKKRWRMVHKPNGAGDDHKKNMETFQRFRSGRTGVGLIDASNR 370 Query: 342 QLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGND 401 +L G+ NR R ASFL L +DWRIG E++ L+D D+ASN G WQ+ A GND Sbjct: 371 ELFCTGYTSNRARQNVASFLSSHLDIDWRIGAEWYEMLLIDYDVASNWGNWQYVAGVGND 430 Query: 402 SVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAP 443 RIFNP Q +D +G +I+ W+PEL + AP Sbjct: 431 PRQ-GRIFNPVKQAFDYDGKGEYIKAWVPELRQLKLTKTVAP 471 >gi|71659265|ref|XP_821356.1| DNA photolyase [Trypanosoma cruzi strain CL Brener] gi|70886733|gb|EAN99505.1| DNA photolyase, putative [Trypanosoma cruzi] Length = 875 Score = 189 bits (481), Expect = 6e-46, Method: Composition-based stats. Identities = 106/544 (19%), Positives = 179/544 (32%), Gaps = 104/544 (19%) Query: 16 NDLRITDNKALYAACHN----SDAKVIAVFIATPEQWRQHGI-------SARQSHFIYAS 64 ND+R+ DN L A VIAV + + Q S ++ F S Sbjct: 232 NDMRVHDNYTLALAAVRAEAAGGLPVIAVAVIDYRTFAQPSAVGGYFRQSPMRARFFLES 291 Query: 65 LLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLE 124 L +++ ++ ++ E + ++ T +F QY +E + Sbjct: 292 LAKLRATIEEE---LHVPLLIRCGRPEEHVPRLAVECGATDVFMTTQYAPHEKNVHDTIV 348 Query: 125 KRLQHRVIC---------------------------------------KSFDDSVLLP-- 143 + ++ R S + L+ Sbjct: 349 ESIKRRKWVSRDVASGLKPKTHDAAVSHPYGNCDGDREAVTAAVSPVPHSVWQTTLVHID 408 Query: 144 ----------------PGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187 + +++ Y + + + +L L P Sbjct: 409 DLPVPVAAMAEGERWYHDDVTVASIRPTAPYDRYIARISSLPTRHELLPTAAERSGLAHP 468 Query: 188 -VTPSNIPRFFDYPFQ-----------AIDPMFPIGEQNALHILRKFCKEKV-----YYY 230 + +IP + A P GE A+ + + + Sbjct: 469 PLYRGSIPTLDQLGYGNQEAFAVEEVIATQSSHPPGEHAAIERVEDWLAGGGVTSLLRHG 528 Query: 231 VEQRDIPAI--QGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKP--KSGAFSWLNELI 286 E R + Q S++SPYLS G LSPR+ + L+ + L + L L Sbjct: 529 REHRTNVKMYSQRLSRVSPYLSNGSLSPRRFYEMLRRYATENLRDNFVQMQYREALLRLS 588 Query: 287 WREFYRHLMAFYPSVCMGKPFIPWTEKIE----WNKDSHLLQAWKQGYTGFPIIDAAMRQ 342 R+ Y H M + P+ P E+ + W D ++Q W G TG P DAAMR+ Sbjct: 589 RRD-YWHWMGLRYGPLLFFPYGPRPEQTDNIPDWRHDEKIVQKWCAGLTGVPFADAAMRE 647 Query: 343 LNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDS 402 L T G++ + R A L + DWR+G E+ LD D G + + + D Sbjct: 648 LLTTGFVAHEGRQALAWLLTRGYGQDWRLGAEWLERCSLDYDPFLCYGNFAYFSELILDD 707 Query: 403 VPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND------LSLNY 456 + + D G +++ WLP L+ +P YIH PH + L Y Sbjct: 708 FGEP-VRSVHWLAHHHDQTGIYVKKWLPLLSKIPPVYIHRPHVLTPRMQAMHGVRLGKTY 766 Query: 457 PLPI 460 P P+ Sbjct: 767 PYPL 770 >gi|297721439|ref|NP_001173082.1| Os02g0625000 [Oryza sativa Japonica Group] gi|255671101|dbj|BAH91811.1| Os02g0625000 [Oryza sativa Japonica Group] Length = 334 Score = 189 bits (479), Expect = 1e-45, Method: Composition-based stats. Identities = 66/157 (42%), Positives = 94/157 (59%), Gaps = 6/157 (3%) Query: 318 KDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFM 377 D ++W+QG TG+P++DA MR+L GW HNR+R+I +SF VK LL+ W G +YF Sbjct: 24 HDEERFKSWRQGMTGYPLVDAGMRELWATGWTHNRIRVIISSFAVKFLLIPWTWGMKYFW 83 Query: 378 SQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPT 437 LLD DL S+ GWQ+ + + D R+ NP +QG+++DP G ++R W+PEL +PT Sbjct: 84 DVLLDADLESDILGWQYISGSLPDGHELSRLDNPEVQGQKYDPDGVYVRTWIPELARMPT 143 Query: 438 QYIHAPHSWL------DKNDLSLNYPLPIVDHKKACH 468 ++IH P +L NYP PIVD A Sbjct: 144 EWIHHPWDAPSCILEVAGVELGFNYPKPIVDLHIARE 180 >gi|298162590|gb|ADI59662.1| cryptochrome [Amphiprion melanopus] Length = 308 Score = 187 bits (476), Expect = 3e-45, Method: Composition-based stats. Identities = 76/313 (24%), Positives = 126/313 (40%), Gaps = 25/313 (7%) Query: 95 DSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQM 154 + ++ +L Y E RD ++K + + S L L+ +++ Sbjct: 1 PRLFKEWKINRLSYEYDSEPFGKERDAAIKKLASEAGVEVTVRISHTLY---DLDKIIEL 57 Query: 155 YKVYTPFRKALIQNLV-QADLRSLPVPAI------RLTGPVTPSNIPR-----FFDYPFQ 202 +P Q L+ + D +P +I + T P++ + + + F Sbjct: 58 NGGQSPLTYKRFQTLISRMDAVEVPAESITAEIMGKCTTPLSEDHDDKFGVPSLEELGFD 117 Query: 203 A---IDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGT----SQLSPYLSIGVLS 255 ++P GE AL L + + K + +R + LSPY G LS Sbjct: 118 TEGLSSAVWPGGETEALTRLERHLERKAWVANFERPRMNANSLLASPTGLSPYPRFGCLS 177 Query: 256 PRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIE 315 R + +L + + + K S S +L+WREF+ P + P +I Sbjct: 178 CRLFYFKLTDLYRKVK-KNSSPPLSLYGQLLWREFFYTAATNNPCFDKMES-NPICVQIP 235 Query: 316 WNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK-DLLVDWRIGEE 374 W+++ L W +G TGFP IDA M QL GW+H+ R A FL + DL + W G + Sbjct: 236 WDRNPEALAKWAEGRTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWISWEEGMK 295 Query: 375 YFMSQLLDGDLAS 387 F LLD D + Sbjct: 296 VFEELLLDADWSV 308 >gi|116787609|gb|ABK24574.1| unknown [Picea sitchensis] gi|224284157|gb|ACN39815.1| unknown [Picea sitchensis] Length = 526 Score = 187 bits (475), Expect = 4e-45, Method: Composition-based stats. Identities = 66/334 (19%), Positives = 123/334 (36%), Gaps = 37/334 (11%) Query: 8 SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHG-----ISARQSHFIY 62 +VW RNDLR+ DN+AL +A + V+ V+ P + + ++ F+ Sbjct: 188 KAAIVWFRNDLRVHDNEALSSANKEA-LSVLPVYCFDPRDYGKSSSGFDKTGPFRATFLL 246 Query: 63 ASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKL 122 + ++ +L ++G E L L+ +++ E+ ++ Sbjct: 247 ECVANLRANLRERGSDLVVR----IGRPEEVLVELAKSIGADALYAHQEVSHEEIATEEK 302 Query: 123 LEKRL-QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLR-SLPVP 180 ++ L + V K F S L P + M Y FR+ + + V+ ++ + Sbjct: 303 IKSSLEEEGVETKFFWGSTLYHPEDLPFKLQDMPSNYGGFRERVQRLSVRQIIKDPEQLK 362 Query: 181 AIRLTGPVTPSNIPRFFDYPF---------QAIDPMFPIGEQNALHILRKFCKEKVYYYV 231 + G V P +P D A++ GE AL L++F E Sbjct: 363 GLPTRGDVEPGKVPSLLDLGLNPNFGQDGKTAVNASLTGGESEALQRLKRFAVECREQPN 422 Query: 232 E------QRDIPAIQGTSQLSPYLSIGVLSPRQCWNRL----------KEEFVDLLIKPK 275 + + + ++SP+L++G LSPR + L + Sbjct: 423 KLGKDGSGESLYGANFSCKISPWLAMGCLSPRYMFEELKKSEKISISSSLGKSSGADSGQ 482 Query: 276 SGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIP 309 G EL+WR+F+R + Y S + P Sbjct: 483 GGLNWLKFELLWRDFFRFITKKYGSAKKQQDASP 516 >gi|317969609|ref|ZP_07970999.1| deoxyribodipyrimidine photolyase [Synechococcus sp. CB0205] Length = 480 Score = 186 bits (473), Expect = 6e-45, Method: Composition-based stats. Identities = 97/399 (24%), Positives = 156/399 (39%), Gaps = 31/399 (7%) Query: 93 WLDSYCLQQRVTKLFYNRQYEIN-EVRRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHA 151 L + + E RD + + LQ + I + + P + + Sbjct: 2 VLARLAKDSGARHVLAHTDSERLVGRVRDARVNRHLQQQGIELEW-----IEP-AGASGK 55 Query: 152 LQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPF-QAIDPMFPI 210 LQ Y + + + + + + VP PV D P+ Sbjct: 56 LQPYSDWNRQWHGAMAAPLVPEPQRVVVPEQCPDAPVP-----SLKDLGLISDGKPIPKA 110 Query: 211 GEQNALHILRKFCKEKVYY-YVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVD 269 G AL L +F + Y + P+ + TS LSPYL GV+SPRQC RL + Sbjct: 111 GTDAALGRLDRFLEGSDSRTYYWELSYPSAKVTSGLSPYLKFGVVSPRQCLQRLTAAGLR 170 Query: 270 LLIKPKSGAFS----WLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDS-HLLQ 324 + L W + P + + + + ++ + L + Sbjct: 171 AKENADRSRLRSIQQLFSRLRWGCSIHQRFRYLPQLELRSLWSAFDQESALSAQQIELYE 230 Query: 325 AWKQGYTGFPIIDAAMRQLNTIG-WM--HNRLRMITASFLVKDLLVDWRIGEEYFMSQLL 381 AWK+G TGFPI+DAA L G W+ + R R I ASFL +DWR G +FM L+ Sbjct: 231 AWKEGRTGFPIVDAAANCLRGGGGWLELNFRSRAIYASFLSNLCGIDWRYGALHFMRHLI 290 Query: 382 DGDLASNNGGWQWAAS-TGNDSVPYFRIFNPTIQG-KRFDPQGTFIRHWLPELNNVPTQY 439 DGD ++ W A T + I++P R DP G FIR WLP+L + Sbjct: 291 DGDCPIDHYQWAMQAGATYRGRKAWTPIYHPGQVAVNRCDPHGLFIRRWLPQLERLTNDQ 350 Query: 440 IHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478 + P ++ +YP P++++++A + + Sbjct: 351 LGEPPAFA-------DYPAPVLNYEEARQARMEALSNTR 382 >gi|302765677|ref|XP_002966259.1| hypothetical protein SELMODRAFT_85247 [Selaginella moellendorffii] gi|300165679|gb|EFJ32286.1| hypothetical protein SELMODRAFT_85247 [Selaginella moellendorffii] Length = 345 Score = 186 bits (473), Expect = 6e-45, Method: Composition-based stats. Identities = 67/314 (21%), Positives = 121/314 (38%), Gaps = 28/314 (8%) Query: 10 HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQ-----HGISARQSHFIYAS 64 +VW RNDLR+ DN+AL AA S VI V+ P+ + + ++ F+ Sbjct: 22 SIVWFRNDLRVHDNEALAAANKES-LSVIPVYCFDPKDYGKSASGFDKTGPYRAKFLVEC 80 Query: 65 LLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLE 124 + ++ +L ++G + +E L + L+ +++ E+ + + Sbjct: 81 VANLRDNLRERGSELVVR----IGNPVEVLSTIAKAVGADGLYAHQEVSSEELGMEDKVT 136 Query: 125 KRLQ-HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLR-SLPVPAI 182 L+ V K F S L + M Y FR + V+A + + Sbjct: 137 SALKDQNVDVKFFWGSTLFHVDDLPFKVEDMPSNYGGFRDKVKDVQVRAATEAPKQLKGL 196 Query: 183 RLTGPVTPSNIPRFFDYPFQAIDPMFP-------IGEQNALHILRKF--CKEKVYYYVEQ 233 G V +IP + + GE AL L+ F ++ Sbjct: 197 PSQGDVKAGDIPSLQELGLSPVSAAGQHKRNRMIGGEVEALKRLKSFSLVSPPPSKGGKE 256 Query: 234 RDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVD-------LLIKPKSGAFSWLNELI 286 I +S++SP+L++G LSPR+ + LK+ SG + EL+ Sbjct: 257 NSIYGANFSSKISPWLAMGCLSPRKMFEDLKKTTSRFVLDSVVASTSGDSGMQWLVFELL 316 Query: 287 WREFYRHLMAFYPS 300 WR+F+R + + + Sbjct: 317 WRDFFRFVTKKHGA 330 >gi|302793095|ref|XP_002978313.1| hypothetical protein SELMODRAFT_108462 [Selaginella moellendorffii] gi|300154334|gb|EFJ20970.1| hypothetical protein SELMODRAFT_108462 [Selaginella moellendorffii] Length = 345 Score = 186 bits (473), Expect = 6e-45, Method: Composition-based stats. Identities = 67/314 (21%), Positives = 121/314 (38%), Gaps = 28/314 (8%) Query: 10 HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQ-----HGISARQSHFIYAS 64 +VW RNDLR+ DN+AL AA S VI V+ P+ + + ++ F+ Sbjct: 22 SIVWFRNDLRVHDNEALAAANKES-LSVIPVYCFDPKDYGKSASGFDKTGPYRAKFLVEC 80 Query: 65 LLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLE 124 + ++ +L ++G + +E L + L+ +++ E+ + + Sbjct: 81 VANLRDNLRERGSELVVR----IGNPVEVLSTIAKAVGADGLYAHQEVSSEELGMEDKVT 136 Query: 125 KRLQ-HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLR-SLPVPAI 182 L+ V K F S L + M Y FR + V+A + + Sbjct: 137 SALKDQNVDVKFFWGSTLFHVDDLPFKVEDMPSNYGGFRDKVKDVQVRAATEAPKQLKGL 196 Query: 183 RLTGPVTPSNIPRFFDYPFQAIDPMFP-------IGEQNALHILRKF--CKEKVYYYVEQ 233 G V +IP + + GE AL L+ F ++ Sbjct: 197 PSQGDVKAGDIPSLQELGLSPVSAAGQHKRNRMIGGEVEALKRLKSFSLVSPPPSKGGKE 256 Query: 234 RDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVD-------LLIKPKSGAFSWLNELI 286 I +S++SP+L++G LSPR+ + LK+ SG + EL+ Sbjct: 257 NSIYGANFSSKISPWLAMGCLSPRKMFEDLKKTTSRFVLDSLVASTSGDSGMQWLVFELL 316 Query: 287 WREFYRHLMAFYPS 300 WR+F+R + + + Sbjct: 317 WRDFFRFVTKKHGA 330 >gi|213158208|ref|YP_002320259.1| deoxyribodipyrimidine photo-lyase [Acinetobacter baumannii AB0057] gi|213057368|gb|ACJ42270.1| deoxyribodipyrimidine photo-lyase [Acinetobacter baumannii AB0057] Length = 136 Score = 185 bits (471), Expect = 9e-45, Method: Composition-based stats. Identities = 81/136 (59%), Positives = 101/136 (74%), Gaps = 2/136 (1%) Query: 340 MRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTG 399 MRQL GWMHNR+RMITA FL K+LL+DWRIGE++FM L+DGDLA+NNGGWQW ASTG Sbjct: 1 MRQLLQTGWMHNRVRMITAMFLCKNLLIDWRIGEQWFMQHLIDGDLAANNGGWQWCASTG 60 Query: 400 NDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLP 459 D+VPYFRIFNP Q K+FDP+G +IR W+ EL ++ + IH P+S K+DL LNY P Sbjct: 61 TDAVPYFRIFNPIAQSKKFDPEGEYIRQWIKELAHLDNKTIHEPYS--SKSDLGLNYSKP 118 Query: 460 IVDHKKACHHTLNQYY 475 IVD K+ + + Sbjct: 119 IVDLKETRLKAIETFK 134 >gi|308811873|ref|XP_003083244.1| Deoxyribodipyrimidine photolyase/cryptochrome (ISS) [Ostreococcus tauri] gi|116055123|emb|CAL57519.1| Deoxyribodipyrimidine photolyase/cryptochrome (ISS) [Ostreococcus tauri] Length = 489 Score = 185 bits (471), Expect = 1e-44, Method: Composition-based stats. Identities = 87/296 (29%), Positives = 131/296 (44%), Gaps = 22/296 (7%) Query: 203 AIDPMFPIGEQNALHILRKFCKEKVYYYVEQR---DIPAIQGTSQLSPYLSIGVLSPRQC 259 I + I E A+ +F + + + D A S+LSPYL G++SPR Sbjct: 60 GIRADWDISEGGAVETWSQFTAVGLDRFEAEHGRADPEAGVTVSRLSPYLRFGMISPRTV 119 Query: 260 WNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEW--- 316 ++ L + K+ + ++ + L RE + +P + E W Sbjct: 120 YHDL------VKKDGKNISKTFWHRLYRRELAYWQLHHWPDLPKT-SVRSHYENRAWLSG 172 Query: 317 NKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYF 376 ++ L+ W++G TGFP++D MR+L GWMH RMITA+FLV L V W G ++F Sbjct: 173 DEADEALRRWQRGETGFPVVDCGMRRLWRTGWMHQTERMITATFLVDYLGVHWTRGADWF 232 Query: 377 MSQLLDGDLASNNGGWQWAASTGNDSVPYFR-IFNPTIQGKRFDPQGTFIRHWLPELNNV 435 M L+D D A N+ WQ A +G D +F P + DP G I W+PEL + Sbjct: 233 MRTLVDADEAINSMMWQNAGKSGLDQWDFFEGTLAPDGSARAHDPHGDAIARWIPELAAL 292 Query: 436 PTQYI-HAPHSWLDKN------DLSLNYPLP-IVDHKKACHHTLNQYYAAKKQSLL 483 P Y+ H P +L YP IVD +A L+ + L+ Sbjct: 293 PRGYLRHRPWEASKATLAECDVELGSTYPRRMIVDLDRARQRMLDDVTTIRHAELV 348 >gi|255564190|ref|XP_002523092.1| DNA photolyase, putative [Ricinus communis] gi|223537654|gb|EEF39277.1| DNA photolyase, putative [Ricinus communis] Length = 458 Score = 185 bits (471), Expect = 1e-44, Method: Composition-based stats. Identities = 71/316 (22%), Positives = 128/316 (40%), Gaps = 32/316 (10%) Query: 10 HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHG-----ISARQSHFIYAS 64 +VW RNDLR+ DN+ L +A + S V+ V+ P ++ + ++ F+ S Sbjct: 128 SIVWFRNDLRVHDNECLNSANNES-MSVLPVYCFDPREYGKSSSGFDKTGPYRASFLIES 186 Query: 65 LLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLE 124 + ++K+L +G L ++ +++ +EV+ + +E Sbjct: 187 VTDLRKNLQDRGSDLVVR----VGKPETVLVELAKAIGADAVYAHKEVSHDEVKAEDKIE 242 Query: 125 KRLQ-HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIR 183 ++ V K F S L + M Y FR+ + V+ + +L + Sbjct: 243 AAMKDEGVEVKYFWGSTLYHVDDLPFKLEDMPSNYGGFREKVHGLEVRKTIAALDQLKGK 302 Query: 184 LT-GPVTPSNIPRFFDYPFQAIDPMFP-------IGEQNALHILRKFCKEKVYYYVEQRD 235 + G V P IP D P GE AL L+KF E + Sbjct: 303 PSRGDVEPGEIPSLLDLGLNPTQGGKPAATASMVGGETEALQRLKKFAAECQAQPPKGGS 362 Query: 236 IPAIQG---TSQLSPYLSIGVLSPRQCWNRLKE----------EFVDLLIKPKSGAFSWL 282 +I G + ++SP+L++G +SPR ++ LK+ + D P +G + Sbjct: 363 QDSIYGANFSCKISPWLTMGCISPRSMFDELKKTATRTISAASKGNDGGSPPDTGMNWLM 422 Query: 283 NELIWREFYRHLMAFY 298 EL+WR+F+R + Y Sbjct: 423 FELLWRDFFRFITKKY 438 >gi|125543822|gb|EAY89961.1| hypothetical protein OsI_11521 [Oryza sativa Indica Group] Length = 451 Score = 184 bits (468), Expect = 2e-44, Method: Composition-based stats. Identities = 67/331 (20%), Positives = 121/331 (36%), Gaps = 39/331 (11%) Query: 2 KATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHG-----ISAR 56 A LVW R DLR+ D++ L+AA + + ++ VF+ P + + Sbjct: 104 PAAAGRRRTLVWFRADLRLHDHEPLHAAV-GASSSLLPVFVFDPRDFGKSPSGFDRTGPY 162 Query: 57 QSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINE 116 ++ F+ S+ +++ L +G + +F + + +E Sbjct: 163 RAGFLLDSVADLRRGLRARGGDLVVR----VGRPEVVIPELARAAGAEAVFAHGEVSRDE 218 Query: 117 VRRDKLLEKRL-QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADL- 174 R ++ + K + + + K F S L + M Y FR+A+ V+ L Sbjct: 219 CRAEEKVSKAVEKEGIEVKYFWGSTLYHLDDLPFRLEDMPSNYGGFREAVKGLDVRKVLD 278 Query: 175 RSLPVPAIRLTGPVTPSNIPRFFDYPFQ-----------AIDPMFPIGEQNALHILRKFC 223 V + + + P IP + A+ GE AL L+KF Sbjct: 279 APEEVKCVPMKNVLEPGEIPTLAELGLTAPPAMAHGSKAAVGSTLIGGEAEALERLKKFA 338 Query: 224 KEKV-----YYYVEQRDIP-AIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPK-- 275 E RD + ++SP+L+ G LSPR + LK+ + Sbjct: 339 SECCMQPNKGDKDSTRDSIYGANFSCKISPWLATGCLSPRFMYEELKKHASRAIPSGSTP 398 Query: 276 --------SGAFSWLNELIWREFYRHLMAFY 298 +G + EL+WR+F+R + Y Sbjct: 399 KNGDGTSDAGTNWLMFELLWRDFFRFITKKY 429 >gi|224128470|ref|XP_002320340.1| predicted protein [Populus trichocarpa] gi|222861113|gb|EEE98655.1| predicted protein [Populus trichocarpa] Length = 424 Score = 184 bits (466), Expect = 4e-44, Method: Composition-based stats. Identities = 67/321 (20%), Positives = 128/321 (39%), Gaps = 38/321 (11%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHG-----ISARQSHFIYASL 65 +VW RNDLR+ DN+ L +A ++S V+ V+ P + + +++F+ S+ Sbjct: 88 IVWFRNDLRVHDNECLNSASNDS-MSVLPVYCFDPRDYGKSSSGFDKTGPYRANFLIESV 146 Query: 66 LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125 ++K+L +G L ++ +R+ +EV+ + +E+ Sbjct: 147 SDLRKNLQARGSDLVVR----VGRPETVLVELAKAIGADAVYAHREVSHDEVKAEDKIEE 202 Query: 126 RLQ-HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSL-PVPAIR 183 ++ V K F S L + M Y F++ + ++ + +L + + Sbjct: 203 VMKDEGVEVKYFWGSTLYHLDDLPFKLEDMPSNYGGFKEKVQVLEIRKTVETLDELKGLP 262 Query: 184 LTGPVTPSNIPRFFDYPFQA-------IDPMFPIGEQNALHILRKFCKEKVYYYVEQRD- 235 G V P +IP D + GE AL L+KF E + + Sbjct: 263 SRGDVEPGDIPNLLDLGLNPAQDGKATANASMVGGEAEALQRLQKFAAECQAQPPKGTNG 322 Query: 236 ----IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVD--------------LLIKPKSG 277 I + ++SP+L++G +SPR ++ LK+ P +G Sbjct: 323 SHDSIYGANFSCKISPWLTVGCISPRSMFDELKKTAARTISGASNCGGGGGGGSGSPDTG 382 Query: 278 AFSWLNELIWREFYRHLMAFY 298 + EL+WR+F+R + Y Sbjct: 383 MNWLMFELLWRDFFRFITKKY 403 >gi|115452953|ref|NP_001050077.1| Os03g0343400 [Oryza sativa Japonica Group] gi|108708083|gb|ABF95878.1| photolyase/blue-light receptor PHR2, putative, expressed [Oryza sativa Japonica Group] gi|113548548|dbj|BAF11991.1| Os03g0343400 [Oryza sativa Japonica Group] gi|125586213|gb|EAZ26877.1| hypothetical protein OsJ_10801 [Oryza sativa Japonica Group] Length = 459 Score = 183 bits (465), Expect = 5e-44, Method: Composition-based stats. Identities = 67/331 (20%), Positives = 121/331 (36%), Gaps = 39/331 (11%) Query: 2 KATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHG-----ISAR 56 A LVW R DLR+ D++ L+AA + + ++ VF+ P + + Sbjct: 112 PAAAGRRRTLVWFRADLRLHDHEPLHAAV-GASSSLLPVFVFDPRDFGKSPSGFDRTGPY 170 Query: 57 QSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINE 116 ++ F+ S+ +++ L +G + +F + + +E Sbjct: 171 RAGFLLDSVADLRRGLRARGGDLVVR----VGRPEVVIPELARAAGAEAVFAHGEVSRDE 226 Query: 117 VRRDKLLEKRL-QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADL- 174 R ++ + K + + + K F S L + M Y FR+A+ V+ L Sbjct: 227 CRAEEKVSKAVEKEGIEVKYFWGSTLYHLDDLPFRLEDMPSNYGGFREAVKGLDVRKVLD 286 Query: 175 RSLPVPAIRLTGPVTPSNIPRFFDYPFQ-----------AIDPMFPIGEQNALHILRKFC 223 V + + + P IP + A+ GE AL L+KF Sbjct: 287 APEEVKCVPMKNVLEPGEIPTLAELGLTAPPAMAHGSKAAVGSTLIGGEAEALERLKKFA 346 Query: 224 KEKV-----YYYVEQRDIP-AIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPK-- 275 E RD + ++SP+L+ G LSPR + LK+ + Sbjct: 347 SECCMQPNKGDKDSTRDSIYGANFSCKISPWLATGCLSPRFMYEELKKHASRAIPSGSTP 406 Query: 276 --------SGAFSWLNELIWREFYRHLMAFY 298 +G + EL+WR+F+R + Y Sbjct: 407 KNGDGTSDAGTNWLMFELLWRDFFRFITKKY 437 >gi|212275814|ref|NP_001131008.1| hypothetical protein LOC100192113 [Zea mays] gi|194690696|gb|ACF79432.1| unknown [Zea mays] gi|194701496|gb|ACF84832.1| unknown [Zea mays] Length = 446 Score = 183 bits (464), Expect = 6e-44, Method: Composition-based stats. Identities = 72/334 (21%), Positives = 130/334 (38%), Gaps = 39/334 (11%) Query: 2 KATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHG-----ISAR 56 A LVW R DLR+ D++ +AA + + ++ VF+ P + + Sbjct: 101 PAAAGRRRTLVWFRADLRLHDHEPFHAAA-GASSSLLPVFVFDPRDFGKSPSGFDRTGPY 159 Query: 57 QSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINE 116 +++F+ S+ +++SL +G + ++ + + +E Sbjct: 160 RANFLLDSVADLRRSLRARGGDLVVR----VGRPEVVIPELARAAGAEAVYAHGEVSRDE 215 Query: 117 VRRDKLLEKRLQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLR 175 VR ++ ++K ++ I K F S L + M Y FR+A+ V+ L Sbjct: 216 VRAEERVQKAVEKEGINVKYFWGSTLYHVEDLPFRLEDMPSNYGGFREAVKGLEVRKVLE 275 Query: 176 SL-PVPAIRLTGPVTPSNIPRFFDYPF-----------QAIDPMFPIGEQNALHILRKFC 223 + V + + + P +IP + A+ GE AL L+KF Sbjct: 276 APEEVKCVPMKNVLEPGDIPTLAELGLTAPPAMSQDSKPAVGSTLIGGETEALERLKKFA 335 Query: 224 KE------KVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPK-- 275 E KV Q I + ++SP+L+ G LSPR + LK+ + Sbjct: 336 AECSMQPNKVDKSNTQDSIYGANFSCKISPWLATGCLSPRFMYEELKKHATKAIPFGSTP 395 Query: 276 --------SGAFSWLNELIWREFYRHLMAFYPSV 301 +G + EL+WR+F+R + Y SV Sbjct: 396 KNNDGTSDAGTNWLMFELLWRDFFRFITKKYSSV 429 >gi|307105812|gb|EFN54060.1| hypothetical protein CHLNCDRAFT_136148 [Chlorella variabilis] Length = 661 Score = 183 bits (464), Expect = 6e-44, Method: Composition-based stats. Identities = 112/619 (18%), Positives = 185/619 (29%), Gaps = 165/619 (26%) Query: 2 KATTAMSVHLVWLRNDLRITDNKALYAACHNSD--------AKVIAVFIATPEQWRQ--- 50 T L+W RNDLR+ D++ L++A + ++ + + Sbjct: 29 SGPTRKPAALIWFRNDLRLADHEPLHSAAADLQHCLSQGQSPLLLPFYCLDERELAPRAG 88 Query: 51 ----------HGISARQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQ 100 + + + + ++ +L + G Q + + L + Sbjct: 89 ELPQEGGLDIPQLGPHRLRLLLEACASLRAALRRLGSDLLAAQGRP-EALVGRLVALAAA 147 Query: 101 QRVTKLFYNRQYEINEVRRD-------KLLEKRLQHRVIC--KSFDDSVLLPPGSILNH- 150 + + + + D +H + C + L P + H Sbjct: 148 AGSSSMALHHHMSPDAASADLEDAVAAAFEAAAARHGLPCSVHRYWGCTLYHPDDLPFHL 207 Query: 151 -------ALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPSNIPR-------- 195 + A Q Q S PA G + P Sbjct: 208 WACGSASSGGRPGAAAVAGPAAEQQQQQRGQCSRVNPAAAEAGLLGPLPTDLASVYSAAG 267 Query: 196 ---------FFDYPFQAIDPMFPI---------------GEQNALHILRKFC-------- 223 + + P GE+ A+ LR + Sbjct: 268 GAATAALACWEALGAVRCAALAPACSGRHDARSALPFGMGEEQAVQRLRYYLGLEESDGH 327 Query: 224 -------KEKVYYYVEQRDIP-AIQGTSQLSPYLSIGVLSPRQCWNRLKEEFV------- 268 + + Y E R P + +++LS +LS+G LSPR + V Sbjct: 328 SVRSVDQEAPIATYRETRMQPFGVDSSAKLSAFLSLGCLSPRTAHAEVARLAVLEQQQQQ 387 Query: 269 ------------------------------DLLIKPKSGAFSWLNELIWREFYRHLMAFY 298 + L L R+F+ Sbjct: 388 QQRRRRGQASSGDAAATAAVAAAAGEAAAAWREPQAGDTWRWLLMHLAIRDFFVFTAVKE 447 Query: 299 PSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITA 358 + P +EW +D L + W QG TG P +DA MR+L G+M NR R Sbjct: 448 GD-ALEAPGGIRGRAVEWRRDDELFRRWAQGQTGLPFVDACMRELGATGFMSNRGRQ--- 503 Query: 359 SFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRF 418 +L +DWR+G YF S L D + A N G W + A TG+D P R F QG+R+ Sbjct: 504 ----NELCLDWRLGLRYFESCLADHEWALNAGNWAYCAGTGSD--PRDRRFKTVSQGERY 557 Query: 419 DPQGTFIRHWLPELNNVPTQYIH--------------------APHSWLDKND------- 451 DP+ I+ W+P+L + + P + + Sbjct: 558 DPEARLIQAWVPQLAALRPAQLAHQPWAAPPAALAAAGVRLGCEPQAATAEAGTERQEQQ 617 Query: 452 ----LSLNYPLPIVDHKKA 466 L YPLP+VD Sbjct: 618 KQQQLGGWYPLPVVDPASQ 636 >gi|160335010|gb|ABX24913.1| cryptochrome 1 [Capsella bursa-pastoris] gi|160335012|gb|ABX24914.1| cryptochrome 1 [Capsella bursa-pastoris] gi|160335016|gb|ABX24916.1| cryptochrome 1 [Capsella bursa-pastoris] gi|160335018|gb|ABX24917.1| cryptochrome 1 [Capsella bursa-pastoris] gi|160335020|gb|ABX24918.1| cryptochrome 1 [Capsella bursa-pastoris] gi|160335022|gb|ABX24919.1| cryptochrome 1 [Capsella bursa-pastoris] gi|160335024|gb|ABX24920.1| cryptochrome 1 [Capsella bursa-pastoris] gi|160335026|gb|ABX24921.1| cryptochrome 1 [Capsella bursa-pastoris] gi|160335028|gb|ABX24922.1| cryptochrome 1 [Capsella bursa-pastoris] gi|160335030|gb|ABX24923.1| cryptochrome 1 [Capsella bursa-pastoris] gi|160335032|gb|ABX24924.1| cryptochrome 1 [Capsella bursa-pastoris] gi|160335034|gb|ABX24925.1| cryptochrome 1 [Capsella bursa-pastoris] gi|160335036|gb|ABX24926.1| cryptochrome 1 [Capsella bursa-pastoris] gi|160335038|gb|ABX24927.1| cryptochrome 1 [Capsella bursa-pastoris] gi|160335040|gb|ABX24928.1| cryptochrome 1 [Capsella bursa-pastoris] gi|160335042|gb|ABX24929.1| cryptochrome 1 [Capsella bursa-pastoris] gi|160335044|gb|ABX24930.1| cryptochrome 1 [Capsella bursa-pastoris] gi|160335046|gb|ABX24931.1| cryptochrome 1 [Capsella bursa-pastoris] gi|160335048|gb|ABX24932.1| cryptochrome 1 [Capsella bursa-pastoris] gi|160335050|gb|ABX24933.1| cryptochrome 1 [Capsella bursa-pastoris] gi|160335052|gb|ABX24934.1| cryptochrome 1 [Capsella bursa-pastoris] gi|160335056|gb|ABX24936.1| cryptochrome 1 [Capsella bursa-pastoris] gi|160335058|gb|ABX24937.1| cryptochrome 1 [Capsella bursa-pastoris] gi|160335060|gb|ABX24938.1| cryptochrome 1 [Capsella bursa-pastoris] gi|160335062|gb|ABX24939.1| cryptochrome 1 [Capsella bursa-pastoris] gi|160335064|gb|ABX24940.1| cryptochrome 1 [Capsella bursa-pastoris] gi|160335066|gb|ABX24941.1| cryptochrome 1 [Capsella bursa-pastoris] gi|160335070|gb|ABX24943.1| cryptochrome 1 [Capsella bursa-pastoris] gi|160335072|gb|ABX24944.1| cryptochrome 1 [Capsella bursa-pastoris] gi|160335074|gb|ABX24945.1| cryptochrome 1 [Capsella bursa-pastoris] gi|160335076|gb|ABX24946.1| cryptochrome 1 [Capsella bursa-pastoris] gi|160335078|gb|ABX24947.1| cryptochrome 1 [Capsella bursa-pastoris] gi|160335080|gb|ABX24948.1| cryptochrome 1 [Capsella bursa-pastoris] gi|160335082|gb|ABX24949.1| cryptochrome 1 [Capsella bursa-pastoris] gi|160335084|gb|ABX24950.1| cryptochrome 1 [Capsella bursa-pastoris] gi|160335086|gb|ABX24951.1| cryptochrome 1 [Capsella bursa-pastoris] gi|160335088|gb|ABX24952.1| cryptochrome 1 [Capsella bursa-pastoris] gi|160335090|gb|ABX24953.1| cryptochrome 1 [Capsella bursa-pastoris] gi|160335092|gb|ABX24954.1| cryptochrome 1 [Capsella bursa-pastoris] gi|160335094|gb|ABX24955.1| cryptochrome 1 [Capsella bursa-pastoris] gi|160335096|gb|ABX24956.1| cryptochrome 1 [Capsella bursa-pastoris] gi|160335098|gb|ABX24957.1| cryptochrome 1 [Capsella bursa-pastoris] gi|160335100|gb|ABX24958.1| cryptochrome 1 [Capsella bursa-pastoris] gi|160335102|gb|ABX24959.1| cryptochrome 1 [Capsella bursa-pastoris] gi|160335104|gb|ABX24960.1| cryptochrome 1 [Capsella bursa-pastoris] gi|160335106|gb|ABX24961.1| cryptochrome 1 [Capsella bursa-pastoris] gi|160335108|gb|ABX24962.1| cryptochrome 1 [Capsella bursa-pastoris] gi|160335110|gb|ABX24963.1| cryptochrome 1 [Capsella bursa-pastoris] gi|160335112|gb|ABX24964.1| cryptochrome 1 [Capsella bursa-pastoris] gi|160335114|gb|ABX24965.1| cryptochrome 1 [Capsella bursa-pastoris] gi|160335116|gb|ABX24966.1| cryptochrome 1 [Capsella bursa-pastoris] gi|160335118|gb|ABX24967.1| cryptochrome 1 [Capsella bursa-pastoris] gi|160335120|gb|ABX24968.1| cryptochrome 1 [Capsella bursa-pastoris] gi|160335122|gb|ABX24969.1| cryptochrome 1 [Capsella bursa-pastoris] gi|160335124|gb|ABX24970.1| cryptochrome 1 [Capsella bursa-pastoris] gi|160335126|gb|ABX24971.1| cryptochrome 1 [Capsella bursa-pastoris] gi|160335128|gb|ABX24972.1| cryptochrome 1 [Capsella bursa-pastoris] gi|160335130|gb|ABX24973.1| cryptochrome 1 [Capsella bursa-pastoris] gi|160335132|gb|ABX24974.1| cryptochrome 1 [Capsella bursa-pastoris] gi|160335134|gb|ABX24975.1| cryptochrome 1 [Capsella bursa-pastoris] gi|160335136|gb|ABX24976.1| cryptochrome 1 [Capsella bursa-pastoris] gi|160335138|gb|ABX24977.1| cryptochrome 1 [Capsella bursa-pastoris] gi|160335140|gb|ABX24978.1| cryptochrome 1 [Capsella bursa-pastoris] gi|160335142|gb|ABX24979.1| cryptochrome 1 [Capsella bursa-pastoris] gi|160335144|gb|ABX24980.1| cryptochrome 1 [Capsella bursa-pastoris] gi|160335146|gb|ABX24981.1| cryptochrome 1 [Capsella bursa-pastoris] gi|160335148|gb|ABX24982.1| cryptochrome 1 [Capsella bursa-pastoris] gi|160335150|gb|ABX24983.1| cryptochrome 1 [Capsella bursa-pastoris] gi|160335154|gb|ABX24985.1| cryptochrome 1 [Capsella bursa-pastoris] gi|160335156|gb|ABX24986.1| cryptochrome 1 [Capsella bursa-pastoris] gi|160335158|gb|ABX24987.1| cryptochrome 1 [Capsella bursa-pastoris] gi|160335160|gb|ABX24988.1| cryptochrome 1 [Capsella bursa-pastoris] gi|160335162|gb|ABX24989.1| cryptochrome 1 [Capsella bursa-pastoris] gi|160335164|gb|ABX24990.1| cryptochrome 1 [Capsella bursa-pastoris] gi|160335166|gb|ABX24991.1| cryptochrome 1 [Capsella bursa-pastoris] gi|160335168|gb|ABX24992.1| cryptochrome 1 [Capsella bursa-pastoris] gi|160335170|gb|ABX24993.1| cryptochrome 1 [Capsella bursa-pastoris] gi|160335172|gb|ABX24994.1| cryptochrome 1 [Capsella bursa-pastoris] gi|160335174|gb|ABX24995.1| cryptochrome 1 [Capsella bursa-pastoris] gi|160335176|gb|ABX24996.1| cryptochrome 1 [Capsella bursa-pastoris] gi|160335178|gb|ABX24997.1| cryptochrome 1 [Capsella bursa-pastoris] gi|160335180|gb|ABX24998.1| cryptochrome 1 [Capsella bursa-pastoris] gi|160335182|gb|ABX24999.1| cryptochrome 1 [Capsella bursa-pastoris] gi|160335184|gb|ABX25000.1| cryptochrome 1 [Capsella bursa-pastoris] gi|160335186|gb|ABX25001.1| cryptochrome 1 [Capsella bursa-pastoris] gi|160335188|gb|ABX25002.1| cryptochrome 1 [Capsella bursa-pastoris] gi|160335190|gb|ABX25003.1| cryptochrome 1 [Capsella bursa-pastoris] gi|261047496|gb|ACX54507.1| cryptochrome 1 [Capsella bursa-pastoris] gi|261047498|gb|ACX54508.1| cryptochrome 1 [Capsella bursa-pastoris] gi|261047500|gb|ACX54509.1| cryptochrome 1 [Capsella bursa-pastoris] gi|261047502|gb|ACX54510.1| cryptochrome 1 [Capsella bursa-pastoris] gi|261047504|gb|ACX54511.1| cryptochrome 1 [Capsella bursa-pastoris] gi|261047506|gb|ACX54512.1| cryptochrome 1 [Capsella bursa-pastoris] gi|261047508|gb|ACX54513.1| cryptochrome 1 [Capsella bursa-pastoris] Length = 209 Score = 183 bits (464), Expect = 6e-44, Method: Composition-based stats. Identities = 75/209 (35%), Positives = 115/209 (55%), Gaps = 7/209 (3%) Query: 267 FVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAW 326 + + +L + RE+ R++ +P +P + + W D + +AW Sbjct: 2 ANEGNEAGEESVNLFLKSIGLREYSRYISFNHP-YSHERPLLGHLKFFPWAVDENYFKAW 60 Query: 327 KQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLA 386 +QG TG+P++DA MR+L GW+H+R+R++ +SF VK L + WR G +YF LLD DL Sbjct: 61 RQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLE 120 Query: 387 SNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSW 446 S+ GWQ+ T DS + RI NP +G +FDP G ++R WLPEL+ +PT +IH P + Sbjct: 121 SDALGWQYITGTLPDSREFDRIDNPQFEGYKFDPNGEYVRRWLPELSRLPTDWIHHPWNA 180 Query: 447 LDKN------DLSLNYPLPIVDHKKACHH 469 + +L NYP PIV +A Sbjct: 181 PESVLQAAGIELGSNYPRPIVGLDEAKAR 209 >gi|195651415|gb|ACG45175.1| photolyase/blue-light receptor PHR2 [Zea mays] Length = 446 Score = 182 bits (463), Expect = 7e-44, Method: Composition-based stats. Identities = 72/334 (21%), Positives = 130/334 (38%), Gaps = 39/334 (11%) Query: 2 KATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHG-----ISAR 56 A LVW R DLR+ D++ +AA + + ++ VF+ P + + Sbjct: 101 PAAAGRRRTLVWFRADLRLHDHEPFHAAA-GASSSLLPVFVFDPRDFGKSPSGFDRTGPY 159 Query: 57 QSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINE 116 +++F+ S+ +++SL +G + ++ + + +E Sbjct: 160 RANFLLDSVADLRRSLRARGGDLVVRVGMPEV----VIPELARAAGAEAVYAHGEVSRDE 215 Query: 117 VRRDKLLEKRLQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLR 175 VR ++ ++K ++ I K F S L + M Y FR+A+ V+ L Sbjct: 216 VRAEERVQKAVEKEGINVKYFWGSTLYHVEDLPFRLEDMPSNYGGFREAVKGLEVRKVLE 275 Query: 176 SL-PVPAIRLTGPVTPSNIPRFFDYPF-----------QAIDPMFPIGEQNALHILRKFC 223 + V + + + P +IP + A+ GE AL L+KF Sbjct: 276 APEEVKCVPMKNVLEPGDIPTLAELGLTAPPAMSQDSKPAVGSTLIGGETEALERLKKFA 335 Query: 224 KE------KVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPK-- 275 E KV Q I + ++SP+L+ G LSPR + LK+ + Sbjct: 336 AECSMQPNKVDKSNTQDSIYGANFSCKISPWLATGCLSPRFMYEELKKHATKAIPFGSTP 395 Query: 276 --------SGAFSWLNELIWREFYRHLMAFYPSV 301 +G + EL+WR+F+R + Y SV Sbjct: 396 KNNDGTSDAGTNWLMFELLWRDFFRFITKKYSSV 429 >gi|328470041|gb|EGF40952.1| deoxyribodipyrimidine photolyase [Vibrio parahaemolyticus 10329] Length = 338 Score = 182 bits (462), Expect = 1e-43, Method: Composition-based stats. Identities = 87/318 (27%), Positives = 135/318 (42%), Gaps = 12/318 (3%) Query: 113 EINEVRRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQA 172 +E L+ H VI + S L + + + +T F K + + Sbjct: 3 GSDEQSILHKLQDEYPHLVIVQHAVRS-LFDESKLPFTLPDLPETFTQFGKCVEGIDIAH 61 Query: 173 DLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNAL-HILRKFCKEKVYYYV 231 + + P+ FD +F GE + L H R F Y Sbjct: 62 PIDAPSRLPPMPKDAQLPTLSSSCFDE-----SALFSGGEWSGLAHCRRYFSSGLASSYK 116 Query: 232 EQRD-IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREF 290 E R+ + + +++ SP+L++G +SPR + LK+ + + EL+WRE+ Sbjct: 117 ETRNGLDGMAYSTKFSPWLALGCVSPRMIYAMLKQYEQTQGANDSTNWIYF--ELLWREY 174 Query: 291 YRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMH 350 + Y I + + +H Q WK G T + I++A M QLN G+M Sbjct: 175 FYWYARCYQQRLFRFGGIRNQPPLT-SFYAHRFQQWKNGTTPYLIVNACMHQLNHTGYMS 233 Query: 351 NRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFN 410 NR R + AS LV +L +DWR G +F +QL+D D+ SN G WQ+ A G D R FN Sbjct: 234 NRGRQLVASCLVHELGLDWRYGAAHFETQLIDYDVGSNWGNWQYLAGVGADPRG-SRQFN 292 Query: 411 PTIQGKRFDPQGTFIRHW 428 Q + +DP FI W Sbjct: 293 LEKQTQMYDPNHEFIERW 310 >gi|160335152|gb|ABX24984.1| cryptochrome 1 [Capsella bursa-pastoris] Length = 209 Score = 182 bits (462), Expect = 1e-43, Method: Composition-based stats. Identities = 75/209 (35%), Positives = 115/209 (55%), Gaps = 7/209 (3%) Query: 267 FVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAW 326 + + +L + RE+ R++ +P +P + + W D + +AW Sbjct: 2 ANEGNEAGEESVNLFLKSIGLREYSRYISFNHP-YSHERPLLGHLKFFPWAVDENYFKAW 60 Query: 327 KQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLA 386 +QG TG+P++DA MR+L GW+H+R+R++ +SF VK L + WR G +YF LLD DL Sbjct: 61 RQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLE 120 Query: 387 SNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSW 446 S+ GWQ+ T DS + RI NP +G +FDP G ++R WLPEL+ +PT +IH P + Sbjct: 121 SDALGWQYITGTLPDSREFDRIDNPXFEGYKFDPNGEYVRRWLPELSRLPTDWIHHPWNA 180 Query: 447 LDKN------DLSLNYPLPIVDHKKACHH 469 + +L NYP PIV +A Sbjct: 181 PESVLQAAGIELGSNYPRPIVGLDEAKAR 209 >gi|160335054|gb|ABX24935.1| cryptochrome 1 [Capsella bursa-pastoris] Length = 206 Score = 181 bits (460), Expect = 2e-43, Method: Composition-based stats. Identities = 75/206 (36%), Positives = 115/206 (55%), Gaps = 7/206 (3%) Query: 267 FVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAW 326 + + +L + RE+ R++ +P +P + + W D + +AW Sbjct: 2 ANEGNEAGEESVNLFLKSIGLREYSRYISFNHP-YSHERPLLGHLKFFPWAVDENYFKAW 60 Query: 327 KQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLA 386 +QG TG+P++DA MR+L GW+H+R+R++ +SF VK L + WR G +YF LLD DL Sbjct: 61 RQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLE 120 Query: 387 SNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSW 446 S+ GWQ+ T DS + RI NP +G +FDP G ++R WLPEL+ +PT +IH P + Sbjct: 121 SDALGWQYITGTLPDSREFDRIDNPQFEGYKFDPNGEYVRRWLPELSRLPTDWIHHPWNA 180 Query: 447 LDKN------DLSLNYPLPIVDHKKA 466 + +L NYP PIV +A Sbjct: 181 PESVLQAAGIELGSNYPRPIVGLDEA 206 >gi|242040969|ref|XP_002467879.1| hypothetical protein SORBIDRAFT_01g035750 [Sorghum bicolor] gi|241921733|gb|EER94877.1| hypothetical protein SORBIDRAFT_01g035750 [Sorghum bicolor] Length = 447 Score = 181 bits (460), Expect = 2e-43, Method: Composition-based stats. Identities = 69/334 (20%), Positives = 129/334 (38%), Gaps = 39/334 (11%) Query: 2 KATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHG-----ISAR 56 A LVW R DLR+ D++ +AA + + ++ VF+ P + + Sbjct: 102 PAAAGRRRTLVWFRADLRLHDHEPFHAAA-GASSSLLPVFVFDPRDFGKSPSGFDRTGPY 160 Query: 57 QSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINE 116 +++F+ S+ +++SL +G + ++ + + +E Sbjct: 161 RANFLLDSVADLRRSLRARGGDLVVR----VGRPEVVIPELARAAGAEAVYAHGEVSRDE 216 Query: 117 VRRDKLLEKRLQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLR 175 VR ++ ++K ++ I K F S L + H M Y FR+A+ V+ L Sbjct: 217 VRAEERVQKAVEKEGINVKYFWGSTLYHVEDLPFHLEDMPSNYGGFREAVKGLEVRKVLE 276 Query: 176 SL-PVPAIRLTGPVTPSNIPRFFDYPF-----------QAIDPMFPIGEQNALHILRKF- 222 + V + + + P +IP + A+ GE AL L+KF Sbjct: 277 APEEVKCVPMKNVLEPGDIPTLAELGLTAPPAMAQDSKPAVGSTLIGGETEALERLKKFA 336 Query: 223 ----CKEKVYYYVEQRDIP-AIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPK-- 275 + +D + ++SP+L+ G LSPR + LK+ + Sbjct: 337 VECSMQPNKADKSNTQDSIYGANFSCKISPWLATGCLSPRFMYEELKKHATRAIPFGSTP 396 Query: 276 --------SGAFSWLNELIWREFYRHLMAFYPSV 301 +G + EL+WR+F+R + Y SV Sbjct: 397 KNNDGTSDAGTNWLMFELLWRDFFRFITKKYSSV 430 >gi|225437398|ref|XP_002270248.1| PREDICTED: hypothetical protein [Vitis vinifera] Length = 454 Score = 180 bits (458), Expect = 3e-43, Method: Composition-based stats. Identities = 66/325 (20%), Positives = 125/325 (38%), Gaps = 36/325 (11%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHG-----ISARQSHFIYASL 65 +VW RNDLR+ DN+ L +A + S ++ V+ P + + ++ F+ S+ Sbjct: 121 IVWFRNDLRVHDNECLNSASNES-MSMLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESV 179 Query: 66 LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125 ++++L ++G L ++ +R+ +EV+ ++ +E Sbjct: 180 SDLRQNLQKRGSDLVVR----IGKPETVLVELAKAVGADAIYAHREVSHDEVKGEEKIEA 235 Query: 126 RLQ-HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSL-PVPAIR 183 ++ V K F S L + QM Y F++ + ++ + +L + + Sbjct: 236 AMKEEGVELKYFWGSTLYHVDDLPFKMEQMPTNYGGFKEKVKGLEIRKTIATLDQLRGLP 295 Query: 184 LTGPVTPSNIPRFFDYPFQAIDPMFP-----------IGEQNALHILRKFCKEKVY---Y 229 G V IP D + GE AL L+KF E Sbjct: 296 ARGDVEAGEIPSLLDLGLSPSATLPQNGMSTANGSLVGGETEALQRLKKFAAECQAQPPK 355 Query: 230 YVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKS----------GAF 279 I + ++SP+L++G LSPR ++ +K+ + S G Sbjct: 356 GAANDSIYGANFSCKISPWLAMGCLSPRSMFDEIKKSASRTISASTSKDGGSGQSDTGMN 415 Query: 280 SWLNELIWREFYRHLMAFYPSVCMG 304 + EL+WR+F+R + Y S Sbjct: 416 WLMFELMWRDFFRFITKKYSSATKQ 440 >gi|118484811|gb|ABK94273.1| unknown [Populus trichocarpa] Length = 457 Score = 180 bits (457), Expect = 4e-43, Method: Composition-based stats. Identities = 65/316 (20%), Positives = 125/316 (39%), Gaps = 33/316 (10%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHG-----ISARQSHFIYASL 65 +VW RNDLR+ DN+ L +A +N V+ V+ P + + +++F+ S+ Sbjct: 127 IVWFRNDLRVHDNECLNSA-NNDSMSVLPVYCFDPRDYGKSSSGFDKTGPYRANFLIESV 185 Query: 66 LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125 ++K+L +G L ++ +R+ +EV+ ++ +E+ Sbjct: 186 SDLRKNLQARGSDLVVR----VGRPETVLVELAKAIGADAVYAHREVSHDEVKAEEKIEE 241 Query: 126 RLQ-HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSL-PVPAIR 183 ++ V K F S L + M Y F++ + ++ + +L + + Sbjct: 242 LMKDEGVEVKYFWGSTLYHLDDLPFKLEDMPSNYGGFKEKVQGLEIRKTIETLDQLKGLP 301 Query: 184 LTGPVTPSNIPRFFDYPFQ-------AIDPMFPIGEQNALHILRKFCKEKVYYYVE---Q 233 G V P +IP D A + GE AL L KF E + Sbjct: 302 SRGDVEPGDIPNLLDLGLNPAQDGKAAANASMVGGETEALQRLNKFAAECQAQPPKGGSH 361 Query: 234 RDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAF-----------SWL 282 I + ++SP+L++G +S R ++ LK+ + + + Sbjct: 362 ESIYGANFSCKISPWLTMGCVSARSMFDELKKTATRTVSAASNHNSGGSSSPGAGMNWLM 421 Query: 283 NELIWREFYRHLMAFY 298 EL+WR+F+R + Y Sbjct: 422 FELMWRDFFRFITKKY 437 >gi|326493834|dbj|BAJ85379.1| predicted protein [Hordeum vulgare subsp. vulgare] Length = 448 Score = 180 bits (456), Expect = 5e-43, Method: Composition-based stats. Identities = 68/323 (21%), Positives = 123/323 (38%), Gaps = 39/323 (12%) Query: 10 HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHG-----ISARQSHFIYAS 64 LVW R DLR+ D++ L+AA + + ++ VF+ P + + ++ F+ S Sbjct: 109 TLVWFRADLRLHDHEPLHAAV-GASSSLLPVFVFDPRDFGKSPSGFDRTGPYRASFLLDS 167 Query: 65 LLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLE 124 + +++SL +G + ++ + + +E R ++ + Sbjct: 168 VADLRRSLRARGGDLVVR----VGRPEVVIPELARAAGAEAVYAHGEVSRDECRTEEKVS 223 Query: 125 KRL-QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADL-RSLPVPAI 182 K + + V K F S L + M Y FR+A+ V+ L V + Sbjct: 224 KAIEKEGVEVKYFWGSTLYHLDDLPFRLNDMPSSYGGFREAVKGLEVRKVLDAPEEVKCV 283 Query: 183 RLTGPVTPSNIPRFFDYPFQAIDPMFP-----------IGEQNALHILRKFCKEKV---- 227 + + P +IP + A M GE AL L+KF E Sbjct: 284 PMKNVLEPGDIPTLGELGLSAPPAMAQDSKSAAGSNLIGGEAEALERLKKFAAECCMQPN 343 Query: 228 --YYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPK---------- 275 Q I + ++SP+L+ G LSPR + LK+ + + Sbjct: 344 KAVKDSTQNSIYGANFSCKISPWLATGCLSPRFMYEELKKHAIRAIPSGSTPKDGDGTSD 403 Query: 276 SGAFSWLNELIWREFYRHLMAFY 298 +G + EL+WR+F+R + Y Sbjct: 404 AGTNWLMFELLWRDFFRFVTKKY 426 >gi|332141438|ref|YP_004427176.1| deoxyribodipyrimidine photolyase [Alteromonas macleodii str. 'Deep ecotype'] gi|327551460|gb|AEA98178.1| deoxyribodipyrimidine photolyase [Alteromonas macleodii str. 'Deep ecotype'] Length = 273 Score = 179 bits (454), Expect = 8e-43, Method: Composition-based stats. Identities = 76/277 (27%), Positives = 121/277 (43%), Gaps = 8/277 (2%) Query: 157 VYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPM-FPIGEQNA 215 ++ R+ + ++ + P + P F GE A Sbjct: 1 MFQSVRRKVEKHCTPLPVLERIAQLPDGFMPNIDKQYILDIELSLPKPSPSSFIGGESAA 60 Query: 216 LHILRKFCKEKVY--YYVEQRD-IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLI 272 L+ L + + Y E R+ + + +++LS +L+ G LS R+ +++ + I Sbjct: 61 LNHLETYLFDWKAAATYKETRNTLDTWKDSTKLSAWLANGSLSAREVIRQVQR--FEQTI 118 Query: 273 KPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTG 332 + + EL+WREF+ L Y + I + D W +G TG Sbjct: 119 EKNDSTYWVYFELLWREFFHWLQCKYGAKWFRFSGIQGRKPTTC-HDPETFSRWCKGETG 177 Query: 333 FPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGW 392 + I+DA MRQL G+M NR R + AS V +L DWR G +F QL+D D+ SN G W Sbjct: 178 YRIVDACMRQLAETGYMSNRGRQLVASCFVHELRQDWRYGAAWFEHQLIDYDVGSNWGNW 237 Query: 393 QWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWL 429 + A G+D + R FN Q + +DP G F + WL Sbjct: 238 LYLAGVGSDPRGH-RQFNLQKQTEIYDPDGRFRKAWL 273 >gi|255027720|ref|ZP_05299706.1| hypothetical protein LmonocytFSL_17612 [Listeria monocytogenes FSL J2-003] Length = 282 Score = 179 bits (453), Expect = 1e-42, Method: Composition-based stats. Identities = 72/294 (24%), Positives = 121/294 (41%), Gaps = 20/294 (6%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 ++W R DLR++DNKALY AC D ++ +F P Q+ + +AS+ Sbjct: 2 TSVMWFRRDLRVSDNKALYHACKEDD--LLLLFQVNPAQFNT---GSPSHQAFFASVAHF 56 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQ-RVTKLFYNRQYEINEVRRDKLLEKRL 127 ++ K + Q F + +E L K+++NR RD+ + Sbjct: 57 KQE-VDKTALLQIM----FGEPVECLKQLKETLPSWDKVYFNRDETGYGAERDEAAKTFF 111 Query: 128 QHR-VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 + + ++F DS L + + YK++TP+ K + + + + Sbjct: 112 DEQEIEVQAFHDSYLHSAEEVKKSPTEYYKIFTPYYKKWREEIKETPFKVTLKADNIRKE 171 Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246 + P +F + P+ GE+ A L F K V Y + RD P + TS LS Sbjct: 172 NLFPKYEEQFAEMTCDL--PILDSGEKTANTRLANFIKHDVADYDKARDFPELDKTSHLS 229 Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPS 300 YL G +S R W L+E + G + EL WR+FY + +P+ Sbjct: 230 RYLRTGEISVRTIWQALQE------NEATEGRAIFEKELCWRDFYNMIYVSFPN 277 >gi|289622017|emb|CBI51195.1| putative cryptochrome [Sordaria macrospora] Length = 530 Score = 179 bits (453), Expect = 1e-42, Method: Composition-based stats. Identities = 72/280 (25%), Positives = 117/280 (41%), Gaps = 37/280 (13%) Query: 193 IPRFFDYPFQAIDPM-FPIGEQNALHILRKFC-KEKVYYYVEQRD-IPAIQGTSQLSPYL 249 + D+P +A F GE +A + + Y + R+ + + +++LS YL Sbjct: 30 LKNLPDFPKKAESSHPFRGGETSAHKRIDDLIMSGGMKRYKDTRNGLLGPEFSTKLSAYL 89 Query: 250 SIGVLSPRQCWNRLKEEFVDLLIK----------PKSGAFSWLNELIWREFYRHLMAFYP 299 + G ++ RQ + L + G + EL+WR++ R Y Sbjct: 90 AQGCVTARQIHHALVAYEDGSDTRYQGADGFGEGDNQGTETVRIELLWRDYMRLCHQKYG 149 Query: 300 SVCM--------GKPFIPWTEKIEWNKD----------------SHLLQAWKQGYTGFPI 335 + +K W + +L + G TG + Sbjct: 150 DKLFRIEGFNGKHTDYEGEDKKHGWKTANTSIALPGQDPTPEKVADILARFNAGTTGMGL 209 Query: 336 IDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWA 395 IDA+ R+L G+ NR R ASFL K + +DWR G E++ L+D D++SN WQ+ Sbjct: 210 IDASQRELLHTGYTSNRARQNVASFLAKHMEIDWRYGAEWYEMLLVDYDVSSNWANWQYV 269 Query: 396 ASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNV 435 A GND RIFNP Q +D G ++R W+PE+ + Sbjct: 270 AGVGNDPRGAARIFNPVKQAFDYDKDGVYVRAWVPEVASF 309 >gi|327342156|gb|AEA50865.1| cry2-2 [Populus tremula] Length = 234 Score = 178 bits (452), Expect = 2e-42, Method: Composition-based stats. Identities = 72/224 (32%), Positives = 116/224 (51%), Gaps = 10/224 (4%) Query: 196 FFDYPFQAIDPM----FPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSI 251 D ++ + + + G NA L +F ++ + YVE R TS LSPYL Sbjct: 12 LEDEAEKSSNSLLGRGWSPGWSNADKALTEFAEQHLIDYVESRLKVGT-STSLLSPYLHF 70 Query: 252 GVLSPRQCWNRLKEEF----VDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPF 307 G LS R+ + ++ + + + K +L + RE+ R+L +P + Sbjct: 71 GELSVRKVFQCVQLKQLLWAKEENLMGKESVTLFLRSIGLREYSRYLCFNFP-FTHERSL 129 Query: 308 IPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLV 367 + + WN + +AW+QG TG+P++DA MR+L GW+HN++R+I +SF VK LL+ Sbjct: 130 LSNLKYFPWNDNQVHFKAWRQGRTGYPLVDAGMRELWATGWIHNKIRVIVSSFAVKVLLL 189 Query: 368 DWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNP 411 WR G +YF LLD DL S+ GWQ+ + + D+ R+ NP Sbjct: 190 PWRWGMKYFWDTLLDADLESDILGWQYISGSLPDAHELERLDNP 233 >gi|297824863|ref|XP_002880314.1| photolyase/blue-light receptor 2 [Arabidopsis lyrata subsp. lyrata] gi|297326153|gb|EFH56573.1| photolyase/blue-light receptor 2 [Arabidopsis lyrata subsp. lyrata] Length = 448 Score = 177 bits (450), Expect = 3e-42, Method: Composition-based stats. Identities = 60/313 (19%), Positives = 120/313 (38%), Gaps = 32/313 (10%) Query: 13 WLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHG-----ISARQSHFIYASLLQ 67 W RNDLR+ DN+ L +A V+ V+ P + + ++ F+ S+ + Sbjct: 121 WFRNDLRVHDNECLNSANDEC-VSVLPVYCFDPRDYGKSSSGFDKTGPFRAQFLIESVSE 179 Query: 68 VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127 ++K+L +G L + ++ +R+ +EV+ + +E + Sbjct: 180 LRKNLQARGSNLVVR----VGKPEAVLVELAKEIGADAVYAHREVSHDEVKAEGKIESAM 235 Query: 128 Q-HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSL-PVPAIRLT 185 + V K F S L + + Y F+ + + ++ + +L + ++ Sbjct: 236 KEEGVEVKYFWGSTLYHLDDLPFKIEDLPSNYGAFKDKVHKLEIRKTIAALDQLKSLPSR 295 Query: 186 GPVTPSNIPRFFDYPFQAI-------DPMFPIGEQNALHILRKFCKEKVYYYVE------ 232 G V +IP D P GE AL L+ F + + Sbjct: 296 GDVELGDIPSLLDLGISPTARTSQEGKPTMVGGETEALTRLKSFAADCQARLSKGNQKGG 355 Query: 233 QRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIK-------PKSGAFSWLNEL 285 + + ++SP+L++G +SPR ++ LK+ +G + EL Sbjct: 356 NNSVFGANFSCKISPWLAMGSISPRSMFDELKKTISASTTTTTPRNGPGDTGLNWLMYEL 415 Query: 286 IWREFYRHLMAFY 298 +WR+F+R + Y Sbjct: 416 LWRDFFRFITKKY 428 >gi|262041228|ref|ZP_06014439.1| deoxyribodipyrimidine photo-lyase [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|259041344|gb|EEW42404.1| deoxyribodipyrimidine photo-lyase [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] Length = 167 Score = 177 bits (449), Expect = 3e-42, Method: Composition-based stats. Identities = 82/165 (49%), Positives = 113/165 (68%), Gaps = 1/165 (0%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M+ HLVWLR DLRI DN AL AAC + A+V+A++IATP QWR+H ++ RQ+ FI + L Sbjct: 1 MATHLVWLRTDLRIHDNLALAAACRDPQAQVLALYIATPGQWREHHLAPRQAAFIASHLQ 60 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 + +L+++GI + +F S+E L +C Q +V+ LFYN QYE NE +RD +E Sbjct: 61 SLHAALAERGIPLWVEEADDFTASVERLADFCQQHQVSHLFYNYQYEFNERQRDAAVENT 120 Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQ 171 L+ VIC+ FDDSVLLPPGS+L +MYKV+TPF+ A I+ L Sbjct: 121 LRD-VICQGFDDSVLLPPGSVLTGGGEMYKVFTPFKNAFIRRLRD 164 >gi|15226633|ref|NP_182281.1| PHR2 (photolyase/blue-light receptor 2); DNA photolyase [Arabidopsis thaliana] gi|116248577|sp|Q8LB72|PHR2_ARATH RecName: Full=Blue-light photoreceptor PHR2 gi|2529668|gb|AAC62851.1| photolyase/blue-light receptor (PHR2) [Arabidopsis thaliana] gi|3319288|gb|AAC26199.1| photolyase/blue light photoreceptor PHR2 [Arabidopsis thaliana] gi|115646759|gb|ABJ17108.1| At2g47590 [Arabidopsis thaliana] gi|330255768|gb|AEC10862.1| photolyase/blue-light receptor 2 [Arabidopsis thaliana] Length = 447 Score = 177 bits (449), Expect = 4e-42, Method: Composition-based stats. Identities = 60/313 (19%), Positives = 120/313 (38%), Gaps = 32/313 (10%) Query: 13 WLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHG-----ISARQSHFIYASLLQ 67 W RNDLR+ DN+ L +A V+ V+ P + + ++ F+ S+ + Sbjct: 120 WFRNDLRVHDNECLNSANDEC-VSVLPVYCFDPRDYGKSSSGFDKTGPFRAQFLIESVSE 178 Query: 68 VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127 ++K+L +G L + ++ +R+ +EV+ + +E + Sbjct: 179 LRKNLQARGSNLVVR----VGKPEAVLVELAKEIGADAVYAHREVSHDEVKAEGKIETAM 234 Query: 128 Q-HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSL-PVPAIRLT 185 + V K F S L + + Y F+ + + ++ + +L + ++ Sbjct: 235 KEEGVEVKYFWGSTLYHLDDLPFKIEDLPSNYGAFKDKVQKLEIRKTIAALDQLKSLPSR 294 Query: 186 GPVTPSNIPRFFDYPFQAI-------DPMFPIGEQNALHILRKFCKEKVYYYVE------ 232 G V +IP D P GE AL L+ F + + Sbjct: 295 GDVELGDIPSLLDLGISPTPRTSQEGKPTMVGGETEALTRLKSFAADCQARLSKGNQKGG 354 Query: 233 QRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIK-------PKSGAFSWLNEL 285 + + ++SP+L++G +SPR ++ LK+ +G + EL Sbjct: 355 NNSVFGANFSCKISPWLAMGSISPRSMFDELKKTISASTTSTTPRNGPGDTGLNWLMYEL 414 Query: 286 IWREFYRHLMAFY 298 +WR+F+R + Y Sbjct: 415 LWRDFFRFITKKY 427 >gi|21592984|gb|AAM64933.1| photolyase/blue-light receptor PHR2 [Arabidopsis thaliana] Length = 447 Score = 177 bits (448), Expect = 5e-42, Method: Composition-based stats. Identities = 60/313 (19%), Positives = 120/313 (38%), Gaps = 32/313 (10%) Query: 13 WLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHG-----ISARQSHFIYASLLQ 67 W RNDLR+ DN+ L +A V+ V+ P + + ++ F+ S+ + Sbjct: 120 WFRNDLRVHDNECLNSANDEC-VSVLPVYCFDPRDYGKSSSGFDKTGPFRAQFLIESVSE 178 Query: 68 VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127 ++K+L +G L + ++ +R+ +EV+ + +E + Sbjct: 179 LRKNLQARGSNLVVR----VGKPEAVLVELAKEIGADAVYAHREVSHDEVKAEGKIETAM 234 Query: 128 Q-HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSL-PVPAIRLT 185 + V K F S L + + Y F+ + + ++ + +L + ++ Sbjct: 235 KEEGVEVKYFWGSTLYHLDDLPFKIEDLPSNYGAFKDKVQKLEIRKTIAALDQLKSLPSR 294 Query: 186 GPVTPSNIPRFFDYPFQAI-------DPMFPIGEQNALHILRKFCKEKVYYYVE------ 232 G V +IP D P GE AL L+ F + + Sbjct: 295 GDVELGDIPSLLDLGISPTPRTSQEGKPTMVGGETEALTRLKSFAADCQXRXSKGNQKGG 354 Query: 233 QRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIK-------PKSGAFSWLNEL 285 + + ++SP+L++G +SPR ++ LK+ +G + EL Sbjct: 355 NNSVFGANFSCKISPWLAMGSISPRSMFDELKKTISASTTSTTPRNGPGDTGLNWLMYEL 414 Query: 286 IWREFYRHLMAFY 298 +WR+F+R + Y Sbjct: 415 LWRDFFRFITKKY 427 >gi|47212596|emb|CAF93038.1| unnamed protein product [Tetraodon nigroviridis] Length = 662 Score = 176 bits (447), Expect = 5e-42, Method: Composition-based stats. Identities = 56/196 (28%), Positives = 91/196 (46%), Gaps = 29/196 (14%) Query: 313 KIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK-DLLVDWRI 371 +I W+++ L W +G TGFP IDA M QL GW+H++ R +A FL + DL + W Sbjct: 452 QIPWDQNPEALAKWAEGRTGFPWIDAIMTQLRQEGWIHHQARRASACFLTRGDLWISWEC 511 Query: 372 GEE---------------------YFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFN 410 G + F LLD D + N G W W S +F+ + Sbjct: 512 GMKVGGPPWSRRRRRRLSARLLPQVFEELLLDADWSVNAGSWMW-LSCSAFFQQFFKCYC 570 Query: 411 PTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND------LSLNYPLPIVDHK 464 P G+R DP G +IR ++P L + P +YI+ P + + + ++YP P+++H Sbjct: 571 PVGFGRRTDPSGDYIRRYIPILKDYPNRYIYEPWNAPEAVQKAANCVVGVDYPRPMINHA 630 Query: 465 KACHHTLNQYYAAKKQ 480 + + + +Q Sbjct: 631 EGSRLNIERMKQVYQQ 646 Score = 103 bits (256), Expect = 9e-20, Method: Composition-based stats. Identities = 36/227 (15%), Positives = 67/227 (29%), Gaps = 36/227 (15%) Query: 10 HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69 + W R LR+ DN AL A +D+ + V++ P + + F+ +L + Sbjct: 5 SVHWFRKGLRLHDNPALQEALSGADS-LRCVYVLDPWFAGAANVGINRWRFLLEALEDLD 63 Query: 70 KSLSQKGIVFQYHQCSNFDDSIEWLDS--------------------------------Y 97 SL + + D L Sbjct: 64 CSLKKLNSRLFVVRGQPTDVFPRLLKVGAGPVRSLVFQSADRAGAMIRASCRCLILSVCV 123 Query: 98 CLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH-RVICKSFDDSVLLPPGSIL-NHALQMY 155 + +VT+L + E RD + K Q V + L I+ + Sbjct: 124 PQEWKVTRLTFEYDPEPYGKERDGAIIKMAQQFGVETIVRNSHTLYNLDRIVEMNNNSPP 183 Query: 156 KVYTPFRKALIQ-NLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPF 201 + F+ + + L + L S+ + G N + + P Sbjct: 184 LTFKRFQTIVSRLELPRRPLPSVTQQQMDKCGTPVADNHDQLYSIPS 230 >gi|52699557|gb|AAU86901.1| cryptochrome 2 [Sylvia borin] Length = 244 Score = 176 bits (447), Expect = 6e-42, Method: Composition-based stats. Identities = 54/162 (33%), Positives = 82/162 (50%), Gaps = 8/162 (4%) Query: 326 WKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGD 384 W +G TGFP IDA M QL GW+H+ R A FL + DL + W G F LLD D Sbjct: 1 WAEGKTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWISWESGVRVFDELLLDAD 60 Query: 385 LASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPH 444 + N G W W S +F + P G+R DP G +++ +LP+L P++YI+ P Sbjct: 61 FSVNAGSWMW-LSCSAFFQQFFHCYCPVGFGRRTDPSGDYVKRYLPKLKGFPSRYIYEPW 119 Query: 445 SWLD------KNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQ 480 + + K + ++YP P+V+H + + + +Q Sbjct: 120 NAPESVQKAAKCIIGVDYPKPMVNHAETSRLNIERMKQIYQQ 161 >gi|303276951|ref|XP_003057769.1| predicted protein [Micromonas pusilla CCMP1545] gi|226460426|gb|EEH57720.1| predicted protein [Micromonas pusilla CCMP1545] Length = 502 Score = 175 bits (444), Expect = 1e-41, Method: Composition-based stats. Identities = 102/490 (20%), Positives = 165/490 (33%), Gaps = 79/490 (16%) Query: 53 ISARQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTK--LFYNR 110 I +++ +L + + NF + +F Sbjct: 4 IGEASRVWLHHALRSLDVDVRAT----YGGGGVNFFAGAHGASLLAAANAIDAKIVFCTA 59 Query: 111 QYEINEVRRDKLLEKRLQHRVIC-KSFDDSVLLPPGSI---LNHALQMYKVYTPFRKALI 166 ++E V RD L+ R I + +L P ++ + + PF A Sbjct: 60 RHEPAHVARDAATAAFLEARGIALVTLPGHLLWDPRALKIDMRREKYFFGTLMPFVHAAE 119 Query: 167 QNLVQADLRSLPVPA----------------IRLTGPVTPSNIPRFFDYPFQAIDPMFPI 210 + + + A L + R + P FP Sbjct: 120 TSGGKVAAPTPAPSAAPCVDLEGADLGADLGADLGADLGADASVRLTSLDDLGVSPRFPP 179 Query: 211 G--------------EQNALHILRKFCKEKVYYYVEQRDIPAI----QGTSQLSPYLSIG 252 G E+ A + F + + Y + TS++SPYL G Sbjct: 180 GRDWSSGIRDEWDISERGANEVWASFTRRGLPEYEAEHGRADAVAPAASTSRMSPYLRFG 239 Query: 253 VLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTE 312 +SPR ++ LK K + + + + REF +A +P + + Sbjct: 240 QISPRAMYHDLKRA------DGKRVSRLFWHRVHRREFAYWQLANWPDMGTKSIRRHYDR 293 Query: 313 KIEWNKDS-------HLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365 + +W D +L+ W++G TGFP +DA MR+L T GWMH RM+ A+FL L Sbjct: 294 RADWIPDPTRDAASAEILRRWREGRTGFPAVDAGMRRLWTTGWMHQTERMLCATFLCDYL 353 Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFR---IFNPTIQGKRFDPQG 422 V W G +F L+D DLA N WQ A +G D F + + + DP G Sbjct: 354 NVHWVHGARWFHDTLVDADLAINAMMWQNAGKSGLDQWDVFSGSLAPDGSKPCRAHDPLG 413 Query: 423 TFIRHWLPELNNVPTQYI-HAPHSWLDK---------NDLSLN--YPLPI------VDHK 464 I +PEL +P ++ H P D + YP + VD Sbjct: 414 DAIATRVPELAGLPRGHLRHRPWEASDAVLETSGVVIRGAGEDGAYPERMLPGVGDVD-G 472 Query: 465 KACHHTLNQY 474 + Sbjct: 473 AGREDARARM 482 >gi|13543860|gb|AAH06077.1| Cry2 protein [Mus musculus] Length = 243 Score = 175 bits (443), Expect = 2e-41, Method: Composition-based stats. Identities = 57/160 (35%), Positives = 81/160 (50%), Gaps = 8/160 (5%) Query: 328 QGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLA 386 +G TGFP IDA M QL GW+H+ R A FL + DL V W G F LLD D + Sbjct: 1 EGKTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWVSWESGVRVFDELLLDADFS 60 Query: 387 SNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSW 446 N G W W S +F + P G+R DP G +IR +LP+L P++YI+ P + Sbjct: 61 VNAGSWMW-LSCSAFFQQFFHCYCPVGFGRRTDPSGDYIRRYLPKLKGFPSRYIYEPWNA 119 Query: 447 LD------KNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQ 480 + K + ++YP PIV+H + + + +Q Sbjct: 120 PESVQKAAKCIIGVDYPRPIVNHAETSRLNIERMKQIYQQ 159 >gi|162660638|gb|EDQ48467.1| AtPHR2-like type 1 CPD DNA photolyase [Physcomitrella patens subsp. patens] Length = 148 Score = 175 bits (443), Expect = 2e-41, Method: Composition-based stats. Identities = 78/148 (52%), Positives = 94/148 (63%), Gaps = 6/148 (4%) Query: 340 MRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTG 399 MRQLNT G+MHNRLRM+ ASFLVKDL +DWR GE +F QL D DLA+NNGGWQWAASTG Sbjct: 1 MRQLNTTGYMHNRLRMVAASFLVKDLGIDWRRGEAWFARQLNDFDLAANNGGWQWAASTG 60 Query: 400 NDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHS------WLDKNDLS 453 D+ P+FRIFNP Q ++FD FI ++PEL +P HAP L Sbjct: 61 CDAQPWFRIFNPITQSQKFDADARFIERYVPELARLPAALRHAPWQARPLELAEAGVVLG 120 Query: 454 LNYPLPIVDHKKACHHTLNQYYAAKKQS 481 +YP P+VDH A TL +Y K+ Sbjct: 121 KDYPHPVVDHAAARERTLARYGVVKQAG 148 >gi|224068346|ref|XP_002302716.1| predicted protein [Populus trichocarpa] gi|222844442|gb|EEE81989.1| predicted protein [Populus trichocarpa] Length = 471 Score = 175 bits (443), Expect = 2e-41, Method: Composition-based stats. Identities = 65/330 (19%), Positives = 125/330 (37%), Gaps = 47/330 (14%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHG-----ISARQSHFIYASL 65 +VW RNDLR+ DN+ L +A +N V+ V+ P + + +++F+ S+ Sbjct: 127 IVWFRNDLRVHDNECLNSA-NNDSMSVLPVYCFDPRDYGKSSSGFDKTGPYRANFLIESV 185 Query: 66 LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125 ++K+L +G L ++ +R+ +EV+ ++ +E+ Sbjct: 186 SDLRKNLQARGSDLVVR----VGRPETVLVELAKAIGADAVYAHREVSHDEVKAEEKIEE 241 Query: 126 RLQ-HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSL-PVPAIR 183 ++ V K F S L + M Y F++ + ++ + +L + + Sbjct: 242 LMKDEGVEVKYFWGSTLYHLDDLPFKLEDMPSNYGGFKEKVQGLEIRKTIETLDQLKGLP 301 Query: 184 LTGPVTPSNIPRFFDYPFQ---------------------AIDPMFPIGEQNALHILRKF 222 G V P +IP D A + GE AL L KF Sbjct: 302 SRGDVEPGDIPNLLDLGLNPAQGTCCIVSLNTCQSQDGKAAANASMVGGETEALQRLNKF 361 Query: 223 CKEKVYYYVE---QRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAF 279 E + I + ++SP+L++G +S R ++ LK+ + + Sbjct: 362 AAECQAQPPKGGSHESIYGANFSCKISPWLTMGCVSARSMFDELKKTATRTISAASNHNS 421 Query: 280 -----------SWLNELIWREFYRHLMAFY 298 + EL+WR+F+R + Y Sbjct: 422 GGSSSPGAGMNWLMFELMWRDFFRFITKKY 451 >gi|163840005|ref|YP_001624410.1| deoxyribodipyrimidine photolyase [Renibacterium salmoninarum ATCC 33209] gi|162953481|gb|ABY22996.1| deoxyribodipyrimidine photolyase [Renibacterium salmoninarum ATCC 33209] Length = 147 Score = 175 bits (443), Expect = 2e-41, Method: Composition-based stats. Identities = 67/142 (47%), Positives = 90/142 (63%), Gaps = 1/142 (0%) Query: 340 MRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTG 399 MRQL GWMHNR+RM+ ASFLVK+LL+DWR GE++F L+D DLASN WQW A +G Sbjct: 1 MRQLWQTGWMHNRVRMVVASFLVKNLLIDWREGEKWFWDTLVDADLASNPANWQWVAGSG 60 Query: 400 NDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSW-LDKNDLSLNYPL 458 D+ PYFR+FNP Q K+FD G ++R ++PEL + ++ IH P +D L YP Sbjct: 61 ADAAPYFRVFNPVTQSKKFDSDGDYLRKFVPELAALGSKEIHEPWKIKPTLDDKPLEYPD 120 Query: 459 PIVDHKKACHHTLNQYYAAKKQ 480 P+VD + L Y + + Sbjct: 121 PLVDLGVSRERALEAYAELRAK 142 >gi|21218740|ref|NP_624519.1| deoxiribopirymidine photolyase [Streptomyces coelicolor A3(2)] gi|5748645|emb|CAB53150.1| deoxiribopirymidine photolyase [Streptomyces coelicolor A3(2)] Length = 415 Score = 174 bits (442), Expect = 2e-41, Method: Composition-based stats. Identities = 70/169 (41%), Positives = 98/169 (57%), Gaps = 5/169 (2%) Query: 312 EKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRI 371 + W G TG+P++DAAMRQL GWMHNR R++ ASFL K L VDWRI Sbjct: 251 RPVAWRGGRRRGHRRLAGRTGYPVVDAAMRQLRHQGWMHNRARLLVASFLTKTLYVDWRI 310 Query: 372 GEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPE 431 G +F+ L+DGD+ +N WQWAA TG D+ P+ R+ NP +Q +RFDP G ++R W+PE Sbjct: 311 GARHFLDLLVDGDVVNNQLNWQWAAGTGTDTRPH-RVLNPLVQARRFDPDGVYVRRWVPE 369 Query: 432 LNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQ 480 L +V +H P L+YP P+V+ L ++ A+ + Sbjct: 370 LRSVEGGKVHEPWRLAAAERGELDYPDPLVELADG----LARFKHARGR 414 >gi|290510439|ref|ZP_06549809.1| deoxyribodipyrimidine photo-lyase [Klebsiella sp. 1_1_55] gi|289777155|gb|EFD85153.1| deoxyribodipyrimidine photo-lyase [Klebsiella sp. 1_1_55] Length = 160 Score = 174 bits (440), Expect = 3e-41, Method: Composition-based stats. Identities = 80/161 (49%), Positives = 113/161 (70%), Gaps = 1/161 (0%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M+ HLVWLR DLRI DN AL AAC + A+V+A++IATP QWR+H ++ RQ+ FI + L Sbjct: 1 MATHLVWLRTDLRIHDNLALAAACRDPQAQVLALYIATPGQWREHHLAPRQAAFIVSHLH 60 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 + +L+++GI + +F S+E L +C Q +V+ LFYN QYE NE +RD +E Sbjct: 61 SLHTALAERGIPLWVEEADDFTASVERLAHFCQQHQVSHLFYNYQYEFNERQRDAAVENT 120 Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQ 167 L+ VIC+ FDDSVLLPPGS++ + +MYKV+TPF+ A I+ Sbjct: 121 LRD-VICQGFDDSVLLPPGSVMTGSGEMYKVFTPFKNAFIR 160 >gi|300934389|ref|ZP_07149645.1| deoxyribodipyrimidine photolyase [Corynebacterium resistens DSM 45100] Length = 216 Score = 174 bits (440), Expect = 4e-41, Method: Composition-based stats. Identities = 79/227 (34%), Positives = 112/227 (49%), Gaps = 22/227 (9%) Query: 255 SPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKI 314 SPR W + E + +S A ++ +LIWR+F H + P++ + Sbjct: 2 SPRTVWATISEA-AERGEIAESEAGAFRRQLIWRDFAWHRLYHVPTLATCN-VQAKFNRF 59 Query: 315 EWNKDSHL----LQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWR 370 W + AWK+G TG P++DA MR+L G MHNR+RM+ S L K+LL+ WR Sbjct: 60 PWGWNEARDSAEFDAWKRGITGVPLVDAGMRELWETGSMHNRVRMVVGSLLTKNLLIHWR 119 Query: 371 IGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLP 430 +GEE+F L+D D A N WQW A G+D+ PYFRIFNP Q + FD + + + W+P Sbjct: 120 LGEEWFWDTLVDADYACNPFNWQWVAGCGDDAAPYFRIFNPVTQAQIFDKESLYQQTWVP 179 Query: 431 ELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477 E Y P PIVD K++ L Y + Sbjct: 180 EAQTNHDGYP----------------PQPIVDLKQSRAEALAVYESL 210 >gi|80971694|gb|ABB52817.1| cryptochrome 1 [Sesamia nonagrioides] Length = 247 Score = 172 bits (435), Expect = 2e-40, Method: Composition-based stats. Identities = 68/236 (28%), Positives = 104/236 (44%), Gaps = 10/236 (4%) Query: 165 LIQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCK 224 IQ + P+ A + + + F + + +P GE L L + Sbjct: 17 CIQITKEISDHCKPIDADSIKFDIPSLDELEFDESGLNPLK--YPGGETEGLRRLNMYMA 74 Query: 225 EKVY--YYVEQRDIPA--IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFS 280 + + + + P T+ LSPY+S G LS + +++LKE + + S Sbjct: 75 RREWVCKFEKPNSSPNSLEPSTTVLSPYISHGCLSAKLFYHKLKEVLNSM--RHTEPPVS 132 Query: 281 WLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAM 340 L +L+WREFY A + +I W K+ L AW +G TG+P +DA M Sbjct: 133 LLGQLMWREFYYTAGAGTENFDKM-VGNSVCTQIPWGKNEEHLIAWAEGRTGYPFVDAIM 191 Query: 341 RQLNTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWA 395 RQL GW+H+ R + A FL + DL + W G + F LLD D + N G W W Sbjct: 192 RQLKQEGWIHHLARHMVACFLTRGDLWISWEQGAKVFEDYLLDYDWSLNAGNWMWV 247 >gi|225873485|ref|YP_002754944.1| deoxyribodipyrimidine photolyase [Acidobacterium capsulatum ATCC 51196] gi|225793521|gb|ACO33611.1| deoxyribodipyrimidine photolyase [Acidobacterium capsulatum ATCC 51196] Length = 470 Score = 171 bits (434), Expect = 2e-40, Method: Composition-based stats. Identities = 90/449 (20%), Positives = 162/449 (36%), Gaps = 32/449 (7%) Query: 8 SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67 + W++ R DN AL A + + V + R F+ L Sbjct: 27 KCVVYWMQRAQRALDNPALDMAIRIGNELGLPVVAYFSAISNFPHANLRHYVFLNQGLAD 86 Query: 68 VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127 +++ ++++ + F + L+ + + L + R +++ KRL Sbjct: 87 IEEDMAERNVTFIVRRPPG-----NSLEQLLEEVQAAMLIGDENPCREPERWRQVIAKRL 141 Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADL----RSLPVPAIR 183 + + D V++P H ++ F L Q LV + +S P P Sbjct: 142 --NMPYWTIDADVVVPSNLFPKHQYMVHIFRKRFEPLLPQYLVPQPVIQAEKSWPHPKGF 199 Query: 184 LTGPV--TPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQG 241 V + FD + +D F G A +L+ F K+ Y ++R+ P + G Sbjct: 200 EAFDVRHDVTEGWSKFDRSVKPVDS-FHGGTHEAQRLLKDFVTNKLANYPKERNHPELDG 258 Query: 242 TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSV 301 TS+LSPYL G +SP +++ + ++ + WR+ + + F P Sbjct: 259 TSRLSPYLHFGHISPLTIALAVEDAHKNKHASREACDSYLNELIAWRDMAVNFVKFVPGY 318 Query: 302 CMGKPFIPWTEKIEWNKDSH------LLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRM 355 + W +K L+ ++ T + +AA RQ+ GWMHN +RM Sbjct: 319 DSFEAAPEWAQKTLREHARDTRDPIYTLEELERAETCDELWNAAQRQMLHAGWMHNYMRM 378 Query: 356 ITASFLVKD---LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSV-------PY 405 A +++ + W LDG + G WA +D Sbjct: 379 YWAKKILEWSPSPVQAWETCVYLNDRYFLDGRDPNGYAGIAWAIGGVHDRPWFERDIFGT 438 Query: 406 FRIFNPTIQGKRFDPQGTFIRHWLPELNN 434 R + K+FD +IR + EL Sbjct: 439 IRYMSGNAAAKKFDAT-RYIRQ-MEELAE 465 >gi|302745158|gb|ADL62682.1| cryptochrome 2b [Phreatichthys andruzzii] Length = 180 Score = 168 bits (426), Expect = 2e-39, Method: Composition-based stats. Identities = 58/179 (32%), Positives = 88/179 (49%), Gaps = 8/179 (4%) Query: 308 IPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK-DLL 366 P +I W+++ L W + TGFP IDA M QL GW+H R FL + DL Sbjct: 3 NPICIRIPWDRNPEALAKWAEAKTGFPWIDAIMTQLRQEGWIHYLARNAVTCFLTRGDLW 62 Query: 367 VDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIR 426 ++W G + F LLD D + N G W S + +F + P G+R DP G FIR Sbjct: 63 INWEEGMKIFEELLLDADWSVNAGSWL-CHSCSSFFQQFFHCYCPVGFGRRIDPNGDFIR 121 Query: 427 HWLPELNNVPTQYIHAPHSWLD------KNDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479 +LP L + P ++I+ P + D K + ++YP P+V+H +A + + + Sbjct: 122 CYLPVLRDFPAKFIYDPWNAPDDVQRAAKCVIGMDYPKPMVNHAEASRLNIERMRQIYQ 180 >gi|146078221|ref|XP_001463490.1| DNA photolyase [Leishmania infantum JPCM5] gi|134067576|emb|CAM65855.1| putative DNA photolyase [Leishmania infantum JPCM5] Length = 932 Score = 168 bits (425), Expect = 2e-39, Method: Composition-based stats. Identities = 74/290 (25%), Positives = 115/290 (39%), Gaps = 22/290 (7%) Query: 205 DPMFPIGEQNALHILRKFCKEKVY----YYVEQRDIPAIQGTSQL---SPYLSIGVLSPR 257 GE AL L+ + + Y +R + +L SPY+++G LSPR Sbjct: 550 SSHPDAGEDAALARLQNWLAQGGVTSLLRYGRERRTNTKMYSQKLARVSPYIALGALSPR 609 Query: 258 QCWNRLKEEFVDLLIKPKSGAFSWLNELIW--REFYRHLMAFYPSVCMGKPFIPWTEKI- 314 + + + EF + + L+ R Y H M + + P E Sbjct: 610 K-YYEVLREFAQENQRDAFVQQQFREGLLRLSRRDYWHWMGLRFGDRLFFSYGPHPEHTD 668 Query: 315 ---EWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRI 371 EW D ++Q W G TG P DAAMR+L G++ R A L + DWR+ Sbjct: 669 DVPEWRHDRKVVQRWCDGLTGIPFADAAMRELVGTGFVAQEGRQALAWLLTRGYGQDWRV 728 Query: 372 GEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPE 431 G E+ LD D G + ++ D + N + D G +++ WLP+ Sbjct: 729 GAEWMERCSLDYDPFVCYGNYAYSCGLMLDDFGEP-VRNVYYLAHQHDQTGIYVKKWLPQ 787 Query: 432 LNNVPTQYIHAPHSWLDKND------LSLNYPLPIVDHKKACHHTLNQYY 475 L+ VP YIH PH ++ L NYP P+ + +L+ Sbjct: 788 LSKVPPVYIHRPHVLTERMQAMHGVYLGKNYPYPL-KLWQGAQRSLSAAE 836 Score = 65.4 bits (158), Expect = 2e-08, Method: Composition-based stats. Identities = 23/133 (17%), Positives = 44/133 (33%), Gaps = 19/133 (14%) Query: 17 DLRITDNKALYAAC---------HNSDAKVIAVFIATPEQWRQHGI-------SARQSHF 60 DLR+ DN+ L A S VI V + + Q S +++ F Sbjct: 237 DLRVHDNQLLAFASVCARAAAAEAGSPVPVIGVCVLDYRTFAQPSTVGGFFRQSPQRAQF 296 Query: 61 IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120 + ++ +++ L E + ++ + QY +E R Sbjct: 297 LLDTVAALRRKLED---TLHVPLLVRCGRPEEHVPRLAVELGAMDVLMTTQYAPHERRVQ 353 Query: 121 KLLEKRLQHRVIC 133 L+ +RL+ Sbjct: 354 ALMVRRLRAGTWV 366 >gi|157865002|ref|XP_001681209.1| DNA photolyase [Leishmania major strain Friedlin] gi|68124504|emb|CAJ02458.1| putative DNA photolyase [Leishmania major strain Friedlin] Length = 934 Score = 168 bits (425), Expect = 2e-39, Method: Composition-based stats. Identities = 74/290 (25%), Positives = 114/290 (39%), Gaps = 22/290 (7%) Query: 205 DPMFPIGEQNALHILRKFCKEKVY----YYVEQRDIPAIQGTSQL---SPYLSIGVLSPR 257 GE AL L+ + + Y +R + +L SPY+++G LSPR Sbjct: 552 SSHPDAGEDAALARLQDWLAQGGVTSLLRYGRERRTNTKMYSQKLARVSPYIALGALSPR 611 Query: 258 QCWNRLKEEFVDLLIKPKSGAFSWLNELIW--REFYRHLMAFYPSVCMGKPFIPWTEKI- 314 + + + EF + + L+ R Y H M + + P E Sbjct: 612 K-YYEVLREFAQANQRDAFVQQQFREGLLRLSRRDYWHWMGLRFGDRLFFSYGPHPEHTD 670 Query: 315 ---EWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRI 371 EW D ++Q W G TG P DAAMR+L G++ R A L + DWR+ Sbjct: 671 DVPEWRHDRKVVQRWCDGLTGIPFADAAMRELVGTGFVAQEGRQALAWLLTRGYGQDWRL 730 Query: 372 GEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPE 431 G E+ LD D G + + D + N + D G +++ WLP+ Sbjct: 731 GAEWMERCSLDYDPFVCYGNYAHSCGLMLDDFGEP-VRNVYYLAHQHDQTGIYVKKWLPQ 789 Query: 432 LNNVPTQYIHAPHSWLDKND------LSLNYPLPIVDHKKACHHTLNQYY 475 L+ VP YIH PH ++ L NYP P+ + +L+ Sbjct: 790 LSKVPPVYIHRPHVLTERMQAMHGVYLGKNYPYPL-KLWQGAQRSLSAAE 838 Score = 68.1 bits (165), Expect = 3e-09, Method: Composition-based stats. Identities = 30/174 (17%), Positives = 57/174 (32%), Gaps = 23/174 (13%) Query: 17 DLRITDNKALY-------AACHNSDAKV--IAVFIATPEQWRQHGI-------SARQSHF 60 DLR+ DN+ L AA V I V + + Q S +++ F Sbjct: 239 DLRVHDNQLLAFASVCTKAAAEEVGGPVPVIGVCVLDYRTFAQPSAVGGFFRQSPQRAQF 298 Query: 61 IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120 + ++ +++ L E + ++ T + QY +E R Sbjct: 299 LLDTVAALRRKLED---TLHVPLLVRCGRPEEHVPRLAVELGATVVLMTTQYAPHERRVQ 355 Query: 121 KLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADL 174 L+ +RL+ + S +++ A+ TP K + D Sbjct: 356 ALMVRRLRAGTWVSREEVSD----EAVVTGAVGQGAPVTPLDKHCGSAAEEDDP 405 >gi|20092859|ref|NP_618934.1| deoxyribodipyrimidine photolyase [Methanosarcina acetivorans C2A] gi|19918164|gb|AAM07414.1| deoxyribodipyrimidine photolyase [Methanosarcina acetivorans C2A] Length = 462 Score = 168 bits (425), Expect = 2e-39, Method: Composition-based stats. Identities = 80/454 (17%), Positives = 157/454 (34%), Gaps = 52/454 (11%) Query: 12 VWLRNDLRITDNKALYAA---CHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 W+ D R+ DN AL A ++ V+ VF G R F+ L ++ Sbjct: 21 YWMSRDQRVEDNWALLFAQVIAQEANVPVVVVFCL---IEGFLGAGRRHYEFMLKGLQEL 77 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128 +++LS+K I F + + E++ Y + +T + ++ + + + Sbjct: 78 EEALSRKKIPFYFLRGDPGQKIPEFVKEYEVGTLIT------DFSPLRIKAEWVGKIISA 131 Query: 129 HRVICKSFDDSVLLPPGSILNHALQMYKVYTP--FRKALIQNLVQADLRSLPVPAIRLTG 186 + D ++P + P + +L +G Sbjct: 132 IEIPFFEVDAHNVVPCWEASPKQEYAAHTFRPKLYGHLSEFLEEFPELEPNSESLKIRSG 191 Query: 187 PVTPSNIPRFFDYPFQAIDP---------------MFPIGEQNALHILRKFCKEKVYYYV 231 P + R + +A+ P F GE+ A + F ++ Y Sbjct: 192 TGMPGILFRTRETEIKALFPEEISDENKDLLFEPEHFEPGEKAARKEMESFLAARLDSYN 251 Query: 232 EQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNE-LIWREF 290 R+ P S LSPYL G +S ++ +++ D K ++L+E L+W+E Sbjct: 252 TLRNDPTKNALSNLSPYLHFGQISAQRVVLEVEKAKSDPESK-----KAFLDEILVWKEI 306 Query: 291 YRHLMAFYPSVCMGKPFIPWTEKI--EWNKDS----HLLQAWKQGYTGFPIIDAAMRQLN 344 + + P + F W +K D + + ++ G T P+ +A+ +L Sbjct: 307 ADNFCYYNPGYDSFESFPDWAKKSLNAHRNDRRKYIYTFEEFEAGKTHDPLWNASQIELL 366 Query: 345 TIGWMHNRLRMITASF---LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGND 401 G MH+ +RM A + + LDG + G W+ +D Sbjct: 367 RTGKMHSYMRMYWAKKILEWSESPEKALEVAICLNDRYELDGRDPNGYAGIAWSIGGLHD 426 Query: 402 SV-------PYFRIFNPTIQGKRFDPQGTFIRHW 428 R + ++F+ + +I + Sbjct: 427 RAWREREVTGKIRYMSYEGCKRKFNVK-LYIAKY 459 >gi|322496922|emb|CBZ31992.1| unnamed protein product [Leishmania donovani BPK282A1] Length = 932 Score = 168 bits (425), Expect = 2e-39, Method: Composition-based stats. Identities = 74/290 (25%), Positives = 115/290 (39%), Gaps = 22/290 (7%) Query: 205 DPMFPIGEQNALHILRKFCKEKVY----YYVEQRDIPAIQGTSQL---SPYLSIGVLSPR 257 GE AL L+ + + Y +R + +L SPY+++G LSPR Sbjct: 550 SSHPDAGEDAALARLQNWLAQGGVTSLLRYGRERRTNTKMYSQKLARVSPYIALGALSPR 609 Query: 258 QCWNRLKEEFVDLLIKPKSGAFSWLNELIW--REFYRHLMAFYPSVCMGKPFIPWTEKI- 314 + + + EF + + L+ R Y H M + + P E Sbjct: 610 K-YYEVLREFAQENQRDAFVQQQFREGLLRLSRRDYWHWMGLRFGDRLFFSYGPHPEHTD 668 Query: 315 ---EWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRI 371 EW D ++Q W G TG P DAAMR+L G++ R A L + DWR+ Sbjct: 669 DVPEWRHDRKVVQRWCDGLTGIPFADAAMRELVGTGFVAQEGRQALAWLLTRGYGQDWRV 728 Query: 372 GEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPE 431 G E+ LD D G + ++ D + N + D G +++ WLP+ Sbjct: 729 GAEWMERCSLDYDPFVCYGNYAYSCGLMLDDFGEP-VRNVYYLAHQHDQTGIYVKKWLPQ 787 Query: 432 LNNVPTQYIHAPHSWLDKND------LSLNYPLPIVDHKKACHHTLNQYY 475 L+ VP YIH PH ++ L NYP P+ + +L+ Sbjct: 788 LSKVPPVYIHRPHVLTERMQAMHGVYLGKNYPYPL-KLWQGAQRSLSAAE 836 Score = 65.0 bits (157), Expect = 2e-08, Method: Composition-based stats. Identities = 23/133 (17%), Positives = 44/133 (33%), Gaps = 19/133 (14%) Query: 17 DLRITDNKALYAAC---------HNSDAKVIAVFIATPEQWRQHGI-------SARQSHF 60 DLR+ DN+ L A S VI V + + Q S +++ F Sbjct: 237 DLRVHDNQLLAFASVCARAAAAEAGSPVPVIGVCVLDYRTFAQPSTVGGFFRQSPQRAQF 296 Query: 61 IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120 + ++ +++ L E + ++ + QY +E R Sbjct: 297 LLDTVAALRRKLED---TLHVPLLVRCGRPEEHVPRLAVELGAMDVLMTTQYAPHERRVQ 353 Query: 121 KLLEKRLQHRVIC 133 L+ +RL+ Sbjct: 354 ALMVRRLRAGTWV 366 >gi|154332778|ref|XP_001562651.1| DNA photolyase [Leishmania braziliensis MHOM/BR/75/M2904] gi|134059654|emb|CAM41774.1| putative DNA photolyase [Leishmania braziliensis MHOM/BR/75/M2904] Length = 959 Score = 167 bits (424), Expect = 2e-39, Method: Composition-based stats. Identities = 71/290 (24%), Positives = 116/290 (40%), Gaps = 22/290 (7%) Query: 205 DPMFPIGEQNALHILRKFCKEKVY----YYVEQRDIPAIQGTSQL---SPYLSIGVLSPR 257 GE AL L+ + + Y +R + +L SPY+++G LSPR Sbjct: 577 SSHPDAGEDAALVRLQDWLAQGGVTSLLRYGRERRTNTKMYSQKLARVSPYIALGALSPR 636 Query: 258 QCWNRLKEEFVDLLIKPKSGAFSWLNELIW--REFYRHLMAFYPSVCMGKPFIPWTEKIE 315 + + + EF + + L+ R Y H M + + P E + Sbjct: 637 K-YYEVLREFAQANQRDAFVQQQFREGLLRLSRRDYWHWMGLRFGDRLFFSYGPHPEHTD 695 Query: 316 ----WNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRI 371 W D ++Q W G TG P DAAMR+L G++ + R A L + DWR+ Sbjct: 696 DVPDWRHDRKVVQRWCNGLTGIPFADAAMRELVGTGFVAHEGRQALAWLLTRGYGQDWRL 755 Query: 372 GEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPE 431 G E+ LD D G + ++ D + + + D G +++ WLP+ Sbjct: 756 GAEWMERCSLDYDPFVCYGNYAYSCGLILDDFGEP-VRSVYYLAHQHDQTGIYVKKWLPQ 814 Query: 432 LNNVPTQYIHAPHSWLDKND------LSLNYPLPIVDHKKACHHTLNQYY 475 L+ VP Y+H PH ++ L NYP P+ + +L+ Sbjct: 815 LSKVPPVYVHRPHVLTERMQAMHGVYLGKNYPYPL-KLWQGAQRSLSAAE 863 Score = 63.9 bits (154), Expect = 6e-08, Method: Composition-based stats. Identities = 23/133 (17%), Positives = 45/133 (33%), Gaps = 19/133 (14%) Query: 17 DLRITDNKALYAACHNSDA---------KVIAVFIATPEQWRQHGI-------SARQSHF 60 DLR+ DN L A + A VI V + + Q + S +++ F Sbjct: 264 DLRVHDNHLLAFASGCARAAAIKTGGPVSVIGVCVLDYRTFAQPSVVGGFFRQSPQRAQF 323 Query: 61 IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120 + ++ ++ L E + ++ + QY +E R Sbjct: 324 LLDTVAALRVKLE---GTLHVPLLVRCGRPEEHVPRLAVELGAMHVLMTTQYAPHERRVQ 380 Query: 121 KLLEKRLQHRVIC 133 +L+ +RL+ Sbjct: 381 ELMVRRLRAGTWV 393 >gi|255324708|ref|ZP_05365822.1| deoxyribodipyrimidine photolyase [Corynebacterium tuberculostearicum SK141] gi|255298183|gb|EET77486.1| deoxyribodipyrimidine photolyase [Corynebacterium tuberculostearicum SK141] Length = 158 Score = 167 bits (424), Expect = 3e-39, Method: Composition-based stats. Identities = 68/157 (43%), Positives = 91/157 (57%), Gaps = 23/157 (14%) Query: 322 LLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLL 381 L+ W+ G TG P++DA MR+L G+MHNR+RM+ SFL K+L + WR+GEE+F L+ Sbjct: 24 RLKDWQAGTTGIPLVDAGMRELWATGYMHNRVRMVVGSFLTKNLGIHWRLGEEWFWDTLV 83 Query: 382 DGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIH 441 D D ASN WQW A G+D+ P+FRIFNP Q KRFDP G ++R W P L+ Sbjct: 84 DADAASNPFNWQWVAGCGDDAAPFFRIFNPETQAKRFDPDGEYVRRWAPALS-------- 135 Query: 442 APHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478 AP PIVD +++ L+ Y K Sbjct: 136 AP---------------PIVDLQESRQAALDAYAEIK 157 >gi|322488942|emb|CBZ24191.1| putative DNA photolyase [Leishmania mexicana MHOM/GT/2001/U1103] Length = 933 Score = 166 bits (420), Expect = 8e-39, Method: Composition-based stats. Identities = 74/290 (25%), Positives = 115/290 (39%), Gaps = 22/290 (7%) Query: 205 DPMFPIGEQNALHILRKFCKEKVY----YYVEQRDIPAIQGTSQL---SPYLSIGVLSPR 257 GE AL L+ + + Y +R + +L SPY+++G LSPR Sbjct: 551 SSHPDAGEDAALVRLQDWLAQGGVTSLLRYGRERRTNTKMYSQKLARVSPYIALGALSPR 610 Query: 258 QCWNRLKEEFVDLLIKPKSGAFSWLNELIW--REFYRHLMAFYPSVCMGKPFIPWTEKI- 314 + + + EF + + L+ R Y H M + + P E Sbjct: 611 K-YYEVLREFAQANQRDAFVQQQFREGLLRLSRRDYWHWMGLRFGDRLFFSYGPHPEHTD 669 Query: 315 ---EWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRI 371 EW D ++Q W G TG P DAAMR+L G++ R A L + DWR+ Sbjct: 670 DVPEWRHDRKVVQRWCDGLTGIPFADAAMRELVGTGFVAQEGRQALAWLLTRGYGQDWRL 729 Query: 372 GEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPE 431 G E+ LD D G + ++ D + N + D G +++ WLP+ Sbjct: 730 GAEWMERCSLDYDPFVCYGNYAYSCGLMLDDFGEP-VRNVYYLAHQHDQTGIYVKKWLPQ 788 Query: 432 LNNVPTQYIHAPHSWLDKND------LSLNYPLPIVDHKKACHHTLNQYY 475 L+ VP YIH PH ++ L NYP P+ + +L+ Sbjct: 789 LSKVPPVYIHRPHVLTERMQAMHGVYLGRNYPYPL-KLWQGAQRSLSAAK 837 Score = 65.0 bits (157), Expect = 2e-08, Method: Composition-based stats. Identities = 26/140 (18%), Positives = 46/140 (32%), Gaps = 20/140 (14%) Query: 11 LVWL-RNDLRITDNKALYAAC---------HNSDAKVIAVFIATPEQWRQHGI------- 53 LV DLR+ DN+ L A VI V + + Q Sbjct: 231 LVVFSTTDLRVHDNQLLAFASVCARAAAAEAGGPVPVIGVCVLDYRTFAQPSTVGGFFRQ 290 Query: 54 SARQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYE 113 S +++ F+ ++ +++ L E + ++ R + QY Sbjct: 291 SPQRAQFLLDTVAALRRKLED---TLHVPLLVRCGRPEEHVPRLAVELRAMDVLMTTQYA 347 Query: 114 INEVRRDKLLEKRLQHRVIC 133 +E R L+ +RLQ Sbjct: 348 PHERRVQALMVRRLQAGTWV 367 >gi|73668073|ref|YP_304088.1| deoxyribodipyrimidine photo-lyase type II [Methanosarcina barkeri str. Fusaro] gi|72395235|gb|AAZ69508.1| Deoxyribodipyrimidine photo-lyase type II [Methanosarcina barkeri str. Fusaro] Length = 462 Score = 165 bits (417), Expect = 2e-38, Method: Composition-based stats. Identities = 85/462 (18%), Positives = 159/462 (34%), Gaps = 46/462 (9%) Query: 1 MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHF 60 + W+ D R+ DN AL A + + VF+ + G RQ F Sbjct: 10 LSGKPGKGPVAYWMSRDQRVEDNWALLFARKIALEADVPVFVVFCLVDKFLGAIRRQYEF 69 Query: 61 IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120 + L +V+ +L++K I F + Q + ++++ Y + +T + ++R Sbjct: 70 MLKGLQEVEATLARKKIPFFFLQGDPEEKIPDFIEKYGIGTLIT------DFSPLRIKRT 123 Query: 121 KLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRS---- 176 + +V D ++P + P L+ + Sbjct: 124 WTEKVASSIKVPFFEVDAHNVVPCWEASKKQEYAAHTFRPKLLRLLPEFLTEYPELETNL 183 Query: 177 -LPVPAIRLTGPVTPSNIPR------------FFDYPFQAIDPMFPIGEQNALHILRKFC 223 P A+R S + + F +F GE A ++ +F Sbjct: 184 EFPEIAVRSGKAERFSEVQKSGIGTRLPGEFLEKKAGFLPDLALFEAGETAARKVMDEFL 243 Query: 224 KEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLN 283 K+ Y R+ P S LSPYL G +S ++ ++++ DL K +L+ Sbjct: 244 TNKLDSYSSLRNDPTKDALSNLSPYLHFGQISAQRVALKVEKAKADLESK-----RVFLD 298 Query: 284 ELI-WREFYRHLMAFYPSVCMGKPFIPWTEKI--EWNKDSH----LLQAWKQGYTGFPII 336 EL+ +E + + P F W +K +D L+ + G T P+ Sbjct: 299 ELLVRKELADNFCYYNPFYDSFDGFPDWAKKTLNSHRRDQRSHIFTLEELETGRTYDPLW 358 Query: 337 DAAMRQLNTIGWMHNRLRMITASF---LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQ 393 +A+ +L G MH+ +RM A + LDG + G Sbjct: 359 NASQIELIRKGKMHSYMRMYWAKKILEWSESPEKALETAIYLNDKYELDGRDPNGYAGIA 418 Query: 394 WAASTGNDSV-------PYFRIFNPTIQGKRFDPQGTFIRHW 428 W+ +D R + ++FD + ++I + Sbjct: 419 WSIGGVHDRAWQEREIFGKIRYMSYEGSKRKFDVK-SYIDKY 459 >gi|160335068|gb|ABX24942.1| cryptochrome 1 [Capsella bursa-pastoris] Length = 186 Score = 164 bits (415), Expect = 3e-38, Method: Composition-based stats. Identities = 67/183 (36%), Positives = 105/183 (57%), Gaps = 1/183 (0%) Query: 267 FVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAW 326 + + +L + RE+ R++ +P +P + + W D + +AW Sbjct: 2 ANEGNEAGEESVNLFLKSIGLREYSRYISFNHP-YSHERPLLGHLKFFPWAVDENYFKAW 60 Query: 327 KQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLA 386 +QG TG+P++DA MR+L GW+H+R+R++ +SF VK L + WR G +YF LLD DL Sbjct: 61 RQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLE 120 Query: 387 SNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSW 446 S+ GWQ+ T DS + RI NP +G +FDP G ++R WLPEL+ +PT +IH P + Sbjct: 121 SDALGWQYITGTLPDSREFDRIDNPQFEGYKFDPNGEYVRRWLPELSRLPTDWIHHPWNA 180 Query: 447 LDK 449 + Sbjct: 181 PES 183 >gi|18857915|dbj|BAB85473.1| CRYPTOCHROME [Sarcophaga crassipalpis] Length = 216 Score = 164 bits (415), Expect = 4e-38, Method: Composition-based stats. Identities = 62/182 (34%), Positives = 90/182 (49%), Gaps = 9/182 (4%) Query: 308 IPWTEKIEW-NKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK-DL 365 I W + LQ W QG TGFP+IDAAMRQL GW+H+ LR A+FL + L Sbjct: 5 NEICLNIPWAQTNHEQLQRWYQGKTGFPLIDAAMRQLLAEGWLHHTLRNTVATFLTRGGL 64 Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFR-IFNPTIQGKRFDPQGTF 424 +W G YF+ LLD D + G W W +S+ + + + P KR DP G + Sbjct: 65 WQNWEHGLRYFLKYLLDADWSVCAGNWMWVSSSAFERLLDSSLVTCPIALAKRLDPMGQY 124 Query: 425 IRHWLPELNNVPTQYIHAPHSWL------DKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478 I+ ++PEL NVP +YIH P + + + ++YP ++D A +N + Sbjct: 125 IKQYVPELANVPKEYIHEPWNMPINVQENSECVIGIHYPERLIDLNVASKRNMNAMRTLR 184 Query: 479 KQ 480 Sbjct: 185 NS 186 >gi|323650256|gb|ADX97214.1| cryptochrome 1a isoform 1 [Perca flavescens] Length = 278 Score = 162 bits (410), Expect = 1e-37, Method: Composition-based stats. Identities = 51/152 (33%), Positives = 76/152 (50%), Gaps = 8/152 (5%) Query: 336 IDAAMRQLNTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQW 394 IDA M QL GW+H+ R A FL + DL + W G + F LLD D + N G W W Sbjct: 1 IDAIMTQLRQEGWIHHLARHAVACFLTRGDLWIGWEEGMKVFEELLLDADWSVNAGSWMW 60 Query: 395 AASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLD------ 448 S + +F + P G+R DP G +IR +LP L P +YI+ P + + Sbjct: 61 -LSCSSFFQQFFHCYCPVGFGRRTDPNGDYIRRYLPVLRGFPAKYIYDPWNAPEIVQKAA 119 Query: 449 KNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQ 480 K + ++YP P+V+H +A + + +Q Sbjct: 120 KCVIGVHYPKPMVNHAEASCLNIERMKQIYQQ 151 >gi|168016051|ref|XP_001760563.1| predicted protein [Physcomitrella patens subsp. patens] gi|162688260|gb|EDQ74638.1| predicted protein [Physcomitrella patens subsp. patens] Length = 528 Score = 162 bits (409), Expect = 2e-37, Method: Composition-based stats. Identities = 63/333 (18%), Positives = 123/333 (36%), Gaps = 48/333 (14%) Query: 10 HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHG-----ISARQSHFIYAS 64 +VW RNDLR+ DN+AL +A +S ++ V+ P+ + + +++F+ Sbjct: 180 SIVWFRNDLRVHDNEALVSANRDS-LSILPVYCFDPKDYGKSSSGFDKTGPYRANFLLEC 238 Query: 65 LLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLE 124 + ++ SL ++G L L+ +++ E++ ++ + Sbjct: 239 VANLRSSLRERGSDLIVR----VGSPEAVLVDLAKSVGAEALYVHQEVTYEELQAEEKVA 294 Query: 125 KRLQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSL-PVPAI 182 LQ + I K F S L + M Y FR+ + ++ + + + + Sbjct: 295 AALQEKGIETKYFWGSTLFHLEDLPFKLQDMPSNYGGFREKVQNVAIRDTIEAPQQLKGL 354 Query: 183 RLTGPVTPSNIPRFFDYPFQAIDPMFPIG-----------EQNALHILRKFCKEKVYYYV 231 G V P +IP + E+ AL L+KF E Sbjct: 355 PACGNVKPGSIPSIEVLGLNPATNLRKGSVTVGGDGLLGGEEEALQRLQKFALEARSQTS 414 Query: 232 EQR-----------DIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEF------------- 267 + + + ++SP+L++G LSPR+ + LK+ Sbjct: 415 NLKASKSQSESSGDSLYGANFSCKISPWLTMGCLSPRRMFEDLKKSASSASAGAMSALAV 474 Query: 268 -VDLLIKPKSGAFSWLNELIWREFYRHLMAFYP 299 +G + EL+WR+F+R + Y Sbjct: 475 KASGAGSDDNGLNWLVFELLWRDFFRFITKKYG 507 >gi|258405445|ref|YP_003198187.1| deoxyribodipyrimidine photolyase [Desulfohalobium retbaense DSM 5692] gi|257797672|gb|ACV68609.1| deoxyribodipyrimidine photolyase [Desulfohalobium retbaense DSM 5692] Length = 469 Score = 161 bits (408), Expect = 2e-37, Method: Composition-based stats. Identities = 88/452 (19%), Positives = 149/452 (32%), Gaps = 36/452 (7%) Query: 2 KATTAMSVHLVWLRNDLRITDNKALYAA---CHNSDAKVIAVFIATPEQWRQHGISARQS 58 + W+ D R+ DN AL A A +I VF P G + R Sbjct: 18 PSVRGSGPVAYWMSRDQRLHDNWALLQAQHMARTRQAPLIIVFCLVPSY---SGGARRHF 74 Query: 59 HFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVR 118 F+ L QV S ++ GI F +D L +C + + ++ + Sbjct: 75 DFMLTGLRQVADSAAKLGIPFVLLTG---EDPPGELAGFCRTHAIGTVVM--DFDPLRTK 129 Query: 119 RDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLP 178 + C D ++P + P + + + +P Sbjct: 130 QQWQHTFAGHWEGECLEVDAHNVVPCRWASEKQEYAARTIRPKLQRQLPEFLDPFPELVP 189 Query: 179 VPAIR---LTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRD 235 P L R P + GE+ AL + R+F + Y E+R+ Sbjct: 190 HPVPWRGSLLPEPDWEAASRSLAAPEYGPPLSWSSGEETALDLAREFIASGLSAYAEKRN 249 Query: 236 IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNEL-IWREFYRHL 294 P S LSPYL G ++P++ + D P +L EL I RE + Sbjct: 250 DPTAGAVSGLSPYLHFGQIAPQRVALMAR----DANWAPAESREGFLEELVIRRELAENF 305 Query: 295 MAFYPSVCMGKPFIPWTEKI------EWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGW 348 + P W ++ + + + + W+ T P+ +AA +++ G Sbjct: 306 CFYNPVYDCFGGLPAWAQQTLDDHRGDHREVVYTFEQWEAARTHDPLWNAAQQEMVQTGK 365 Query: 349 MHNRLRMITASFLVKDLLVDWR---IGEEYFMSQLLDGDLASNNGGWQWAASTGNDS--- 402 MH +RM A +++ LDG + G W+ +D Sbjct: 366 MHGYMRMYWAKKILEWSASPEEALSTAITLNDRYELDGRDPNGYTGVLWSIGGVHDRPWK 425 Query: 403 ----VPYFRIFNPTIQGKRFDPQGTFIRHWLP 430 R N ++FD Q +IR + P Sbjct: 426 ERPVYGKVRYMNDRGAARKFDVQA-YIRRFFP 456 >gi|160334828|gb|ABX24822.1| cryptochrome 1 [Capsella bursa-pastoris] gi|160334846|gb|ABX24831.1| cryptochrome 1 [Capsella bursa-pastoris] gi|160334856|gb|ABX24836.1| cryptochrome 1 [Capsella bursa-pastoris] gi|160334862|gb|ABX24839.1| cryptochrome 1 [Capsella bursa-pastoris] gi|160334910|gb|ABX24863.1| cryptochrome 1 [Capsella bursa-pastoris] gi|160334912|gb|ABX24864.1| cryptochrome 1 [Capsella bursa-pastoris] gi|160334914|gb|ABX24865.1| cryptochrome 1 [Capsella bursa-pastoris] gi|160334916|gb|ABX24866.1| cryptochrome 1 [Capsella bursa-pastoris] gi|160334920|gb|ABX24868.1| cryptochrome 1 [Capsella bursa-pastoris] gi|260765937|gb|ACX49999.1| cryptochrome 1 [Capsella bursa-pastoris] gi|260765939|gb|ACX50000.1| cryptochrome 1 [Capsella bursa-pastoris] Length = 155 Score = 160 bits (404), Expect = 6e-37, Method: Composition-based stats. Identities = 66/154 (42%), Positives = 94/154 (61%), Gaps = 6/154 (3%) Query: 322 LLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLL 381 + W+QG TG+P++DA MR+L GW+H+R+R++ +SF VK L + WR G +YF LL Sbjct: 2 YFKGWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFVKVLQLPWRWGMKYFWDTLL 61 Query: 382 DGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIH 441 D DL S+ GWQ+ T DS + RI NP +G +FDP G ++R WLPEL+ +PT +IH Sbjct: 62 DADLESDALGWQYITGTLPDSREFDRIDNPQFEGYKFDPNGEYVRRWLPELSRLPTDWIH 121 Query: 442 APHSWLDKN------DLSLNYPLPIVDHKKACHH 469 P + + +L NYP PIV +A Sbjct: 122 HPWNAPESVLQAAGIELGSNYPRPIVGLDEAKAR 155 >gi|260765945|gb|ACX50003.1| cryptochrome 1 [Capsella bursa-pastoris] Length = 155 Score = 159 bits (403), Expect = 8e-37, Method: Composition-based stats. Identities = 66/154 (42%), Positives = 94/154 (61%), Gaps = 6/154 (3%) Query: 322 LLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLL 381 + W+QG TG+P++DA MR+L GW+H+R+R++ +SF VK L + WR G +YF LL Sbjct: 2 YFKXWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFVKVLQLPWRWGMKYFWDTLL 61 Query: 382 DGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIH 441 D DL S+ GWQ+ T DS + RI NP +G +FDP G ++R WLPEL+ +PT +IH Sbjct: 62 DADLESDALGWQYITGTLPDSREFDRIDNPQFEGYKFDPNGEYVRRWLPELSRLPTDWIH 121 Query: 442 APHSWLDKN------DLSLNYPLPIVDHKKACHH 469 P + + +L NYP PIV +A Sbjct: 122 HPWNAPESVLQAAGIELGSNYPRPIVGLDEAKAR 155 >gi|160334784|gb|ABX24800.1| cryptochrome 1 [Capsella rubella] gi|160334786|gb|ABX24801.1| cryptochrome 1 [Capsella rubella] gi|160334788|gb|ABX24802.1| cryptochrome 1 [Capsella rubella] gi|160334790|gb|ABX24803.1| cryptochrome 1 [Capsella rubella] gi|160334792|gb|ABX24804.1| cryptochrome 1 [Capsella rubella] gi|160334794|gb|ABX24805.1| cryptochrome 1 [Capsella rubella] gi|160334796|gb|ABX24806.1| cryptochrome 1 [Capsella rubella] gi|160334798|gb|ABX24807.1| cryptochrome 1 [Capsella rubella] gi|160334800|gb|ABX24808.1| cryptochrome 1 [Capsella rubella] gi|160334802|gb|ABX24809.1| cryptochrome 1 [Capsella rubella] gi|160334804|gb|ABX24810.1| cryptochrome 1 [Capsella rubella] gi|160334806|gb|ABX24811.1| cryptochrome 1 [Capsella rubella] gi|160334808|gb|ABX24812.1| cryptochrome 1 [Capsella rubella] gi|160334810|gb|ABX24813.1| cryptochrome 1 [Capsella rubella] gi|160334814|gb|ABX24815.1| cryptochrome 1 [Capsella rubella] gi|160334816|gb|ABX24816.1| cryptochrome 1 [Capsella rubella] gi|160334818|gb|ABX24817.1| cryptochrome 1 [Capsella rubella] gi|160334820|gb|ABX24818.1| cryptochrome 1 [Capsella rubella] gi|160334822|gb|ABX24819.1| cryptochrome 1 [Capsella rubella] gi|160334824|gb|ABX24820.1| cryptochrome 1 [Capsella rubella] gi|160334826|gb|ABX24821.1| cryptochrome 1 [Capsella bursa-pastoris] gi|160334830|gb|ABX24823.1| cryptochrome 1 [Capsella bursa-pastoris] gi|160334832|gb|ABX24824.1| cryptochrome 1 [Capsella bursa-pastoris] gi|160334834|gb|ABX24825.1| cryptochrome 1 [Capsella bursa-pastoris] gi|160334836|gb|ABX24826.1| cryptochrome 1 [Capsella bursa-pastoris] gi|160334838|gb|ABX24827.1| cryptochrome 1 [Capsella bursa-pastoris] gi|160334840|gb|ABX24828.1| cryptochrome 1 [Capsella bursa-pastoris] gi|160334842|gb|ABX24829.1| cryptochrome 1 [Capsella bursa-pastoris] gi|160334844|gb|ABX24830.1| cryptochrome 1 [Capsella bursa-pastoris] gi|160334848|gb|ABX24832.1| cryptochrome 1 [Capsella bursa-pastoris] gi|160334850|gb|ABX24833.1| cryptochrome 1 [Capsella bursa-pastoris] gi|160334852|gb|ABX24834.1| cryptochrome 1 [Capsella bursa-pastoris] gi|160334854|gb|ABX24835.1| cryptochrome 1 [Capsella bursa-pastoris] gi|160334858|gb|ABX24837.1| cryptochrome 1 [Capsella bursa-pastoris] gi|160334860|gb|ABX24838.1| cryptochrome 1 [Capsella bursa-pastoris] gi|160334864|gb|ABX24840.1| cryptochrome 1 [Capsella bursa-pastoris] gi|160334866|gb|ABX24841.1| cryptochrome 1 [Capsella bursa-pastoris] gi|160334868|gb|ABX24842.1| cryptochrome 1 [Capsella bursa-pastoris] gi|160334870|gb|ABX24843.1| cryptochrome 1 [Capsella bursa-pastoris] gi|160334872|gb|ABX24844.1| cryptochrome 1 [Capsella bursa-pastoris] gi|160334874|gb|ABX24845.1| cryptochrome 1 [Capsella bursa-pastoris] gi|160334876|gb|ABX24846.1| cryptochrome 1 [Capsella bursa-pastoris] gi|160334878|gb|ABX24847.1| cryptochrome 1 [Capsella bursa-pastoris] gi|160334880|gb|ABX24848.1| cryptochrome 1 [Capsella bursa-pastoris] gi|160334882|gb|ABX24849.1| cryptochrome 1 [Capsella bursa-pastoris] gi|160334884|gb|ABX24850.1| cryptochrome 1 [Capsella bursa-pastoris] gi|160334886|gb|ABX24851.1| cryptochrome 1 [Capsella bursa-pastoris] gi|160334888|gb|ABX24852.1| cryptochrome 1 [Capsella bursa-pastoris] gi|160334890|gb|ABX24853.1| cryptochrome 1 [Capsella bursa-pastoris] gi|160334892|gb|ABX24854.1| cryptochrome 1 [Capsella bursa-pastoris] gi|160334894|gb|ABX24855.1| cryptochrome 1 [Capsella bursa-pastoris] gi|160334896|gb|ABX24856.1| cryptochrome 1 [Capsella bursa-pastoris] gi|160334898|gb|ABX24857.1| cryptochrome 1 [Capsella bursa-pastoris] gi|160334900|gb|ABX24858.1| cryptochrome 1 [Capsella bursa-pastoris] gi|160334902|gb|ABX24859.1| cryptochrome 1 [Capsella bursa-pastoris] gi|160334904|gb|ABX24860.1| cryptochrome 1 [Capsella bursa-pastoris] gi|160334906|gb|ABX24861.1| cryptochrome 1 [Capsella bursa-pastoris] gi|160334908|gb|ABX24862.1| cryptochrome 1 [Capsella bursa-pastoris] gi|160334918|gb|ABX24867.1| cryptochrome 1 [Capsella bursa-pastoris] gi|160334922|gb|ABX24869.1| cryptochrome 1 [Capsella bursa-pastoris] gi|160334924|gb|ABX24870.1| cryptochrome 1 [Capsella bursa-pastoris] gi|160334926|gb|ABX24871.1| cryptochrome 1 [Capsella bursa-pastoris] gi|160334928|gb|ABX24872.1| cryptochrome 1 [Capsella bursa-pastoris] gi|160334930|gb|ABX24873.1| cryptochrome 1 [Capsella bursa-pastoris] gi|160334932|gb|ABX24874.1| cryptochrome 1 [Capsella bursa-pastoris] gi|160334934|gb|ABX24875.1| cryptochrome 1 [Capsella bursa-pastoris] gi|160334936|gb|ABX24876.1| cryptochrome 1 [Capsella bursa-pastoris] gi|160334938|gb|ABX24877.1| cryptochrome 1 [Capsella bursa-pastoris] gi|160334940|gb|ABX24878.1| cryptochrome 1 [Capsella bursa-pastoris] gi|160334942|gb|ABX24879.1| cryptochrome 1 [Capsella bursa-pastoris] gi|160334944|gb|ABX24880.1| cryptochrome 1 [Capsella bursa-pastoris] gi|160334946|gb|ABX24881.1| cryptochrome 1 [Capsella bursa-pastoris] gi|160334948|gb|ABX24882.1| cryptochrome 1 [Capsella bursa-pastoris] gi|160334950|gb|ABX24883.1| cryptochrome 1 [Capsella bursa-pastoris] gi|160334952|gb|ABX24884.1| cryptochrome 1 [Capsella bursa-pastoris] gi|160334954|gb|ABX24885.1| cryptochrome 1 [Capsella bursa-pastoris] gi|160334956|gb|ABX24886.1| cryptochrome 1 [Capsella bursa-pastoris] gi|160334958|gb|ABX24887.1| cryptochrome 1 [Capsella bursa-pastoris] gi|160334960|gb|ABX24888.1| cryptochrome 1 [Capsella bursa-pastoris] gi|160334962|gb|ABX24889.1| cryptochrome 1 [Capsella bursa-pastoris] gi|160334964|gb|ABX24890.1| cryptochrome 1 [Capsella bursa-pastoris] gi|160334966|gb|ABX24891.1| cryptochrome 1 [Capsella bursa-pastoris] gi|160334968|gb|ABX24892.1| cryptochrome 1 [Capsella bursa-pastoris] gi|160334970|gb|ABX24893.1| cryptochrome 1 [Capsella bursa-pastoris] gi|160334972|gb|ABX24894.1| cryptochrome 1 [Capsella bursa-pastoris] gi|160334974|gb|ABX24895.1| cryptochrome 1 [Capsella bursa-pastoris] gi|160334976|gb|ABX24896.1| cryptochrome 1 [Capsella bursa-pastoris] gi|160334978|gb|ABX24897.1| cryptochrome 1 [Capsella bursa-pastoris] gi|160334980|gb|ABX24898.1| cryptochrome 1 [Capsella bursa-pastoris] gi|160334982|gb|ABX24899.1| cryptochrome 1 [Capsella bursa-pastoris] gi|160334984|gb|ABX24900.1| cryptochrome 1 [Capsella bursa-pastoris] gi|160334986|gb|ABX24901.1| cryptochrome 1 [Capsella bursa-pastoris] gi|160334988|gb|ABX24902.1| cryptochrome 1 [Capsella bursa-pastoris] gi|160334990|gb|ABX24903.1| cryptochrome 1 [Capsella bursa-pastoris] gi|160334992|gb|ABX24904.1| cryptochrome 1 [Capsella bursa-pastoris] gi|160334994|gb|ABX24905.1| cryptochrome 1 [Capsella bursa-pastoris] gi|160334996|gb|ABX24906.1| cryptochrome 1 [Capsella bursa-pastoris] gi|160334998|gb|ABX24907.1| cryptochrome 1 [Capsella bursa-pastoris] gi|160335000|gb|ABX24908.1| cryptochrome 1 [Capsella bursa-pastoris] gi|160335002|gb|ABX24909.1| cryptochrome 1 [Capsella bursa-pastoris] gi|160335004|gb|ABX24910.1| cryptochrome 1 [Capsella bursa-pastoris] gi|160335006|gb|ABX24911.1| cryptochrome 1 [Capsella bursa-pastoris] gi|160335008|gb|ABX24912.1| cryptochrome 1 [Capsella bursa-pastoris] gi|260765935|gb|ACX49998.1| cryptochrome 1 [Capsella bursa-pastoris] gi|260765943|gb|ACX50002.1| cryptochrome 1 [Capsella bursa-pastoris] gi|260765947|gb|ACX50004.1| cryptochrome 1 [Capsella bursa-pastoris] gi|260765949|gb|ACX50005.1| cryptochrome 1 [Capsella bursa-pastoris] gi|260765951|gb|ACX50006.1| cryptochrome 1 [Capsella bursa-pastoris] Length = 155 Score = 159 bits (402), Expect = 9e-37, Method: Composition-based stats. Identities = 67/154 (43%), Positives = 95/154 (61%), Gaps = 6/154 (3%) Query: 322 LLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLL 381 +AW+QG TG+P++DA MR+L GW+H+R+R++ +SF VK L + WR G +YF LL Sbjct: 2 YFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFVKVLQLPWRWGMKYFWDTLL 61 Query: 382 DGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIH 441 D DL S+ GWQ+ T DS + RI NP +G +FDP G ++R WLPEL+ +PT +IH Sbjct: 62 DADLESDALGWQYITGTLPDSREFDRIDNPQFEGYKFDPNGEYVRRWLPELSRLPTDWIH 121 Query: 442 APHSWLDKN------DLSLNYPLPIVDHKKACHH 469 P + + +L NYP PIV +A Sbjct: 122 HPWNAPESVLQAAGIELGSNYPRPIVGLDEAKAR 155 >gi|160334812|gb|ABX24814.1| cryptochrome 1 [Capsella rubella] Length = 155 Score = 158 bits (400), Expect = 2e-36, Method: Composition-based stats. Identities = 67/154 (43%), Positives = 95/154 (61%), Gaps = 6/154 (3%) Query: 322 LLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLL 381 +AW+QG TG+P++DA MR+L GW+H+R+R++ +SF VK L + WR G +YF LL Sbjct: 2 YFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFVKVLQLPWRWGMKYFWDTLL 61 Query: 382 DGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIH 441 D DL S+ GWQ+ T DS + RI NP +G +FDP G ++R WLPEL+ +PT +IH Sbjct: 62 DADLESDALGWQYITGTLPDSREFDRIDNPQFEGYKFDPNGEYVRRWLPELSRLPTDWIH 121 Query: 442 APHSWLDKN------DLSLNYPLPIVDHKKACHH 469 P + + +L NYP PIV +A Sbjct: 122 HPWNAPESVLQAAGIELGSNYPRPIVXLDEAKAR 155 >gi|226326775|ref|ZP_03802293.1| hypothetical protein PROPEN_00635 [Proteus penneri ATCC 35198] gi|225204612|gb|EEG86966.1| hypothetical protein PROPEN_00635 [Proteus penneri ATCC 35198] Length = 158 Score = 158 bits (399), Expect = 2e-36, Method: Composition-based stats. Identities = 59/152 (38%), Positives = 95/152 (62%) Query: 8 SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67 VHLVW R+DLR+TDNKAL+ AC + A+V A+F TPEQW+ H ++ FI+ +LL Sbjct: 5 PVHLVWFRHDLRVTDNKALFHACQDKQAQVHAIFTVTPEQWKAHNMALSCQAFIHNALLD 64 Query: 68 VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127 + SL++ I + ++ + + YC Q VT LF+N QY +NE RRDK + + L Sbjct: 65 LSTSLAKLNIPLTIVISDTYSNAADKVAEYCQQHHVTALFFNHQYALNEQRRDKKVTELL 124 Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYT 159 +++ ++ D+V +PPG+++ +M+KV+ Sbjct: 125 KNKTTVYTYHDNVFIPPGNVVTQQGEMFKVFY 156 >gi|317151798|ref|YP_004119846.1| deoxyribodipyrimidine photolyase [Desulfovibrio aespoeensis Aspo-2] gi|316942049|gb|ADU61100.1| deoxyribodipyrimidine photolyase [Desulfovibrio aespoeensis Aspo-2] Length = 450 Score = 158 bits (399), Expect = 2e-36, Method: Composition-based stats. Identities = 84/449 (18%), Positives = 142/449 (31%), Gaps = 38/449 (8%) Query: 3 ATTAMSVHLVWLRNDLRITDNKALYAACHNSDAK--VIAVFIATPEQWRQHGISARQSHF 60 A A L W+ + R+ DN L A + + ++ VF P RQ F Sbjct: 14 APLAAGPILYWMSREQRVRDNWGLLHAREMAGQEHALVVVFCLAPAFLGATL---RQYDF 70 Query: 61 IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120 + + L QV+ L+ GI F Q + + + + ++ V++ Sbjct: 71 MLSGLAQVEGDLAALGIPFVLLQGDPG----QEIPRLAAELGAGGVVT--DFDPLRVKQG 124 Query: 121 KLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVP 180 V D ++P + + P LI ++ P Sbjct: 125 WQGAAAHALPVSFIEVDGHNVVPARQVSPKQEYAARTIRPKIHRLIGEYLEEFPPLEPQV 184 Query: 181 AIRLTGPVTPSNIPRFFDYPFQAIDPM-----FPIGEQNALHILRKFCKEKVYYYVEQRD 235 A T A+D GE A L +F ++++ Y QR+ Sbjct: 185 APAPPCAATARAAHWGEVRAGLAVDGAVGPVSLVPGEDAAHDALDRFVADRLHVYAGQRN 244 Query: 236 IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLM 295 P GTS+LS Y G L+P++ + + A ++ RE + Sbjct: 245 DPNADGTSRLSAYFHFGQLAPQR-----AALAAAASGRGEGQAAYLEELVVRRELADNFC 299 Query: 296 AFYPSV--CMGKPFIPWTEKIEWNKDSHLLQAWKQ----GYTGFPIIDAAMRQLNTIGWM 349 P G P E D ++ TG + +AA +L G+M Sbjct: 300 LHNPQYDSLAGAPAWALKTLGEHRADPRAHCYTRETFEQARTGSRLWNAAQNELRQTGFM 359 Query: 350 HNRLRMITASFLVKDLLVDWRIGEEYFM---SQLLDGDLASNNGGWQWAASTGNDSV--- 403 H +RM A +++ LDG + G W+ + +D Sbjct: 360 HGYMRMFWAKKILEWSATPEEAHATALALNDRYQLDGRDPNGYVGILWSLAGLHDRPWQT 419 Query: 404 ----PYFRIFNPTIQGKRFDPQGTFIRHW 428 R N ++FD +I W Sbjct: 420 RPVFGSVRFMNENGCRRKFDVD-KYIERW 447 >gi|78355226|ref|YP_386675.1| deoxyribodipyrimidine photo-lyase type II [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] gi|78217631|gb|ABB36980.1| Deoxyribodipyrimidine photo-lyase type II [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] Length = 487 Score = 157 bits (398), Expect = 3e-36, Method: Composition-based stats. Identities = 85/472 (18%), Positives = 154/472 (32%), Gaps = 43/472 (9%) Query: 2 KATTAMSVHLVWLRNDLRITDNKALYAACHNSDA---KVIAVFIATPEQWRQHGISARQS 58 + A + L W+ ++R DN AL A + A + VF P+ R Sbjct: 17 RGHAAGAPVLYWMHREMRARDNWALLHAQQCAAAGGAPLAVVFCLVPQFI---DAGLRHF 73 Query: 59 HFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQY-EINEV 117 HF+ L + + L + GI + + E + + +++ + I Sbjct: 74 HFMLQGLEETARILEELGIPLFLLRGTP----PEEVVRFAQAHGASRVVTDFDTLRIKRQ 129 Query: 118 RRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSL 177 +E Q + D ++P + + P L+ + Sbjct: 130 WIRSAVEAARQLDIAVDVVDSRNVVPCLRASDKREYAARTIRPKIHRLLDEYLDPLPALQ 189 Query: 178 PVPAIRLTGPVTPSNIPRFFDYPFQAI---DPMFPIGEQNALHILRKFCKEKVYYYVEQR 234 P P A P GE AL L F + +++ Y +R Sbjct: 190 PAAVPWKGAYQRPDWQAALDSLQADASVQPAGWLPPGENAALAELTAFIRVRMHRYAAER 249 Query: 235 DIPAIQGTSQLSPYLSIGVLSP-RQCWNRLKEEFVDLLIKPKSGAFSWLNELI------- 286 + P + S LSPYL G+LS R ++ + GA +++ EL+ Sbjct: 250 NNPLMPVLSHLSPYLHFGMLSAQRAVLEVMQAQGTAAGGTYGEGAAAFVEELVVRRELAD 309 Query: 287 ---WREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQL 343 W E + +P + ++ + D L ++ T P+ +AA +++ Sbjct: 310 NFCWYEPSYDSVEAFPDWALKTLDRHRADRRPYLYDEQQL---EKARTHDPLWNAAQQEM 366 Query: 344 NTIGWMHNRLRMITASF---LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGN 400 G MH +RM A + RI LDG ++ G W+ + Sbjct: 367 VLTGKMHGYMRMYWAKKILEWTESPEEALRIVIRQNDRWSLDGRDSNGYAGAAWSVGGVH 426 Query: 401 DSV-------PYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHS 445 D R + +FD G ++ + + + AP S Sbjct: 427 DRPWREREVFGTIRFMSYNGARSKFDVDG-----YVAAVAALENHPVPAPVS 473 >gi|21673346|ref|NP_661411.1| DNA deoxyribodipyrimidine photolyase, class II [Chlorobium tepidum TLS] gi|21646440|gb|AAM71753.1| DNA deoxyribodipyrimidine photolyase, classII [Chlorobium tepidum TLS] Length = 459 Score = 157 bits (398), Expect = 3e-36, Method: Composition-based stats. Identities = 86/436 (19%), Positives = 146/436 (33%), Gaps = 40/436 (9%) Query: 8 SVHLVWLRNDLRITDNKALYAACHNSDA---KVIAVFIATPEQWRQHGISARQSHFIYAS 64 + W+ D R+ N AL AC ++ + VF +P R F++ Sbjct: 23 GPVIYWMSRDQRVRHNWALLFACQKANQLGQPLEVVFTLSPSFLGAP---MRHYDFMFRG 79 Query: 65 LLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLE 124 L +V+ L + G+ F + + E L Y ++ + + ++ R L Sbjct: 80 LREVETRLRELGVPFTVL----YGEPGETLPKYTEKRNAGVVVA--DFSPLKLVRGWKLA 133 Query: 125 KRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALI-QNLVQADLRSLPVPAIR 183 Q D ++P + P AL + L L Sbjct: 134 VAQQLSCAFYEVDAHNIVPCWLASPKQEYAARTIRPKLNALQGEFLTGFPEPELRHQPDT 193 Query: 184 LTGPVTPSNIPRFF--DYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQG 241 L PV + + D +A+ P GE A LR F ++ Y ++R+ P Sbjct: 194 LPPPVQWNAMETLLKVDRSIKAV-PGLEPGETAAEARLRSFVTGRLSRYADERNDPNSGA 252 Query: 242 TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKS-GAFSWLNEL-IWREFYRHLMAFYP 299 S LSPYL G LS + F K +++ EL I RE + + Sbjct: 253 VSGLSPYLHFGQLSAQ------HATFEAARSKASEVNREAFVEELFIRRELSENYCYYNE 306 Query: 300 SVCMGKPFIPWTEKI------EWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRL 353 W +K + + + +++ T P+ +AA QL G +H + Sbjct: 307 RYDSFDGIPEWAKKTLMEHAGDHRDAIYTPEQFERAQTHDPLWNAAQTQLLETGIIHGYM 366 Query: 354 RMITASFLVKDLLVDWRIGEEYFM---SQLLDGDLASNNGGWQWAASTGNDS-------V 403 RM A +++ + M LDG + G W+ +D Sbjct: 367 RMYWAKKILEWSATPAAAFDIALMLNDRYALDGRDPNGYVGVAWSIGGLHDRPWTERPVY 426 Query: 404 PYFRIFNPTIQGKRFD 419 R N ++FD Sbjct: 427 GTIRYMNSNGCKRKFD 442 >gi|167009787|ref|ZP_02274718.1| deoxyribodipyrimidine photolyase [Francisella tularensis subsp. holarctica FSC200] Length = 144 Score = 155 bits (393), Expect = 1e-35, Method: Composition-based stats. Identities = 64/145 (44%), Positives = 88/145 (60%), Gaps = 7/145 (4%) Query: 340 MRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTG 399 MR+ G+MHNR+RMI ASFL+K+ L+ W+ GE++F L D D ASNN WQW A G Sbjct: 1 MREPWQAGYMHNRVRMIVASFLIKNCLIHWKYGEKWFFDTLFDADFASNNANWQWVAGCG 60 Query: 400 NDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHS----WLDKNDLSL- 454 D+ PYFRIFNP +Q ++F+ +IR ++PEL +P + I P L + ++L Sbjct: 61 LDAAPYFRIFNPVLQAEKFEAY-EYIRKYVPELKLLPNKLIAKPWEASELVLQEAGITLG 119 Query: 455 -NYPLPIVDHKKACHHTLNQYYAAK 478 NYP PIVD KK+ L + K Sbjct: 120 QNYPKPIVDLKKSRDRALQLHNQIK 144 >gi|170750160|ref|YP_001756420.1| deoxyribodipyrimidine photo-lyase [Methylobacterium radiotolerans JCM 2831] gi|170656682|gb|ACB25737.1| Deoxyribodipyrimidine photo-lyase [Methylobacterium radiotolerans JCM 2831] Length = 462 Score = 155 bits (393), Expect = 1e-35, Method: Composition-based stats. Identities = 77/427 (18%), Positives = 142/427 (33%), Gaps = 33/427 (7%) Query: 23 NKALYAACHNS---DAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQKSLSQKGIVF 79 N AL A + D V+A F +AR F+ L + L ++G+ F Sbjct: 36 NPALELAIEEANRLDLPVVACFGLLDGASGFPEANARHYAFLLQGLADAKAGLEKRGVGF 95 Query: 80 QYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHRVICKSFDDS 139 +CS + +I + L +R Y + + + ++ R++ + Sbjct: 96 VMRKCSPAEIAIAL------AEDAALLVLDRGYLAIQKGWYREIAAAVKTRIV--QVEGD 147 Query: 140 VLLPPGSI--------LNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPS 191 V++P + ++ +++ PF L V+ L + + Sbjct: 148 VVVPVETASPKHEYAARTLRPKLNRLWDPFLAPLKPRRVKHSADRLTLKSAIDVSDPEAV 207 Query: 192 NIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSI 251 D + F GE A L+ F K+ Y R++P S +SPYL Sbjct: 208 LAGMTLDREVGPVRR-FTGGETQARKRLKAFLKDGFSGYGAGRNMPEAAAASHMSPYLHF 266 Query: 252 GVLSPRQCWNRLKEEFVDLLIKPKSGAFSWL--NELIWREFYRHLMAFYPSVCMGKPFIP 309 G +SP + ++E V + + EL Y + Sbjct: 267 GQISPVEIALAVREAKVGDSDDRGAYLEELIVRRELAMNHVYYTEGYDDYDRAVPDWARK 326 Query: 310 WTEKIEWNKDSHLLQAWK--QGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLV 367 + ++ H + G T +AAMR++ G+MHN+LRM +++ Sbjct: 327 TLAEHARDERPHAYSEAQLAAGETHDRYWNAAMREMRETGYMHNQLRMYWGKKILEWSPS 386 Query: 368 DWRIGEEYFM---SQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQG-----KRFD 419 LDG ++ W + +IF K+FD Sbjct: 387 PREGFARTLRLNNRYFLDGRDPNSFTNVAWVYGLHDRPWQKRKIFGTVRYQSENSLKKFD 446 Query: 420 PQGTFIR 426 + ++R Sbjct: 447 AKA-YVR 452 >gi|118580428|ref|YP_901678.1| deoxyribodipyrimidine photolyase [Pelobacter propionicus DSM 2379] gi|118503138|gb|ABK99620.1| Deoxyribodipyrimidine photo-lyase type II [Pelobacter propionicus DSM 2379] Length = 450 Score = 155 bits (392), Expect = 1e-35, Method: Composition-based stats. Identities = 86/444 (19%), Positives = 143/444 (32%), Gaps = 38/444 (8%) Query: 8 SVHLVWLRNDLRITDNKALYAACH---NSDAKVIAVFIATPEQWRQHGISARQSHFIYAS 64 + W+ D R DN AL A A ++ +F P RQ F+ Sbjct: 20 GPVVYWMSRDQRAMDNWALLHAQELALERRAPLVVLFTLAPSFLGATL---RQYGFMLRG 76 Query: 65 LLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLE 124 L + + L++ I F + L S+ + RV + ++ V+R Sbjct: 77 LAETAQLLAKMNIPFYLLRGEPVG----QLCSFVERNRVGTVVT--DFDPLRVKRVWREG 130 Query: 125 KRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL 184 V D ++P + + P + L+ + + +P P Sbjct: 131 AARLCGVPFFEVDSHNIVPCRFVSDKQEYGAHTLRPKLRRLLADFLHEFPPLIPHPHAWP 190 Query: 185 TGPVTPSNIPRFFDYPFQAIDPMFP---IGEQNALHILRKFCKEKVYYYVEQRDIPAIQG 241 D G + A LR F + + Y +R+ P G Sbjct: 191 VPFQPLDPQGILSDLYMDRSVSELSNPLPGTRAAGERLRSFIAQGLEDYGLRRNDPCCDG 250 Query: 242 TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELI-WREFYRHLMAFYPS 300 S+LSP+L G L+P++ + + ++L+ELI RE + + Sbjct: 251 QSELSPWLHFGQLAPQRVALETVRT-----LSGSPSSEAFLDELIVRRELSDNFCLHNQA 305 Query: 301 VCMGKPFIPWTEKI--EWNKDSHLLQAWKQ----GYTGFPIIDAAMRQLNTIGWMHNRLR 354 + F W K E D ++ T P+ +AA R L G MH LR Sbjct: 306 YDRLEGFPAWALKTLGEHRHDRREYLYTQEQFQDAETHDPLWNAAQRSLLLGGKMHGYLR 365 Query: 355 MITASFLVKDLLVDWRIGE---EYFMSQLLDGDLASNNGGWQWAASTGNDSV-------P 404 M A +++ LDG + G W+ +D Sbjct: 366 MYWAKKILEWSASPEEALAVAIRLNDRYSLDGRDPNGYAGIAWSMGGVHDRAWGERPVFG 425 Query: 405 YFRIFNPTIQGKRFDPQGTFIRHW 428 R N ++FD +IR W Sbjct: 426 KIRYMNDRGCRRKFDVDA-YIRRW 448 >gi|21226954|ref|NP_632876.1| deoxyribodipyrimidine photolyase [Methanosarcina mazei Go1] gi|20905266|gb|AAM30548.1| Deoxyribodipyrimidine photolyase [Methanosarcina mazei Go1] Length = 464 Score = 154 bits (390), Expect = 2e-35, Method: Composition-based stats. Identities = 83/459 (18%), Positives = 157/459 (34%), Gaps = 54/459 (11%) Query: 8 SVHLVWLRNDLRITDNKALY---AACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYAS 64 + W+ D R DN AL A ++ V+ VF T E RQ F+ Sbjct: 19 GPVVYWMSRDQRAEDNWALLFSRAIAKEANVPVVVVFCLTDEFLEA---GIRQYEFMLKG 75 Query: 65 LLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLE 124 L +++ SLS+K I + + + ++ Y VT + ++ ++ +E Sbjct: 76 LQELEVSLSRKKIPSFFLRGDPGEKISRFVKDYNAGTLVT------DFSPLRIK-NQWIE 128 Query: 125 KRLQH-RVICKSFDDSVLLPPGSILNHALQMYKVYTP--FRKALIQNLVQADLRSLPVPA 181 K + + D ++P + P + +L V Sbjct: 129 KVISGISIPFFEVDAHNVVPCWEASQKHEYAAHTFRPKLYALLPEFLEEFPELEPNSVTP 188 Query: 182 IRLTGPVTPSNIPRFFDYPFQAIDP---------------MFPIGEQNALHILRKFCKEK 226 G + + +A+ P F GE+ A ++ F ++ Sbjct: 189 ELSAGAGMVETLSDVLETGVKALLPERALLKNKDPLFEPWHFEPGEKAAKKVMESFIADR 248 Query: 227 VYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNE-L 285 + Y R+ P S LSPYL G +S ++ + + ++L+E L Sbjct: 249 LDSYGALRNDPTKNMLSNLSPYLHFGQISSQRVVLEV-----EKAESNPGSKKAFLDEIL 303 Query: 286 IWREFYRHLMAFYPSVCMGKPFIPWTE------KIEWNKDSHLLQAWKQGYTGFPIIDAA 339 IW+E + + P + F W + + + + L+ ++ G T P+ +A+ Sbjct: 304 IWKEISDNFCYYNPGYDGFESFPSWAKESLNAHRNDVRSHIYTLEEFEAGKTHDPLWNAS 363 Query: 340 MRQLNTIGWMHNRLRMITASF---LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAA 396 +L + G MH +RM A + I LDG + G W+ Sbjct: 364 QMELLSTGKMHGYMRMYWAKKILEWSESPEKALEIAICLNDRYELDGRDPNGYAGIAWSI 423 Query: 397 STGNDSV-------PYFRIFNPTIQGKRFDPQGTFIRHW 428 +D R + ++FD + +I + Sbjct: 424 GGVHDRAWGEREVTGKIRYMSYEGCKRKFDVK-LYIEKY 461 >gi|159463644|ref|XP_001690052.1| cryptochrome DASH2 [Chlamydomonas reinhardtii] gi|158284040|gb|EDP09790.1| cryptochrome DASH2 [Chlamydomonas reinhardtii] Length = 647 Score = 154 bits (390), Expect = 2e-35, Method: Composition-based stats. Identities = 69/230 (30%), Positives = 99/230 (43%), Gaps = 24/230 (10%) Query: 238 AIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLM-- 295 + +++LSP+ ++G ++PR+ + ++ V + HL+ Sbjct: 412 GVDSSTKLSPFCALGCITPRRIYQEVEAVRVAAKAAAVPCSVGAEAGGGGGGGAAHLLPA 471 Query: 296 -AFYPSVCMGKPFIPWT-------------------EKIEWNKDSHLLQAWKQGYTGFPI 335 A + M + + + W +D +L W G TG P Sbjct: 472 PAECDWLAMHLCIRDFWTYTVLKEGLATLDERGIVGQPVSWRRDPEVLARWCSGRTGLPF 531 Query: 336 IDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWA 395 +DA MR+L GWM NR R AS L KDL DWR G E F LLD D+A N W + Sbjct: 532 VDANMRELAATGWMSNRGRQNVASLLAKDLQQDWRWGAELFECLLLDSDVAVNYCNWNYF 591 Query: 396 ASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHS 445 A GND P R F QG ++D WLPEL ++P + HAP S Sbjct: 592 AGVGND--PRNRRFKTVTQGMQYDEDAVLAATWLPELAHLPPRLRHAPWS 639 Score = 50.0 bits (118), Expect = 8e-04, Method: Composition-based stats. Identities = 16/70 (22%), Positives = 32/70 (45%), Gaps = 12/70 (17%) Query: 18 LRITDNKALYAACHNSDAKVIAVFIATPEQWRQ-----------HGISARQSHFIYASLL 66 +R+ DN+AL +A ++DA +AV I P + ++ F+ L Sbjct: 1 MRLDDNEALTSAVRHADA-TLAVHILDPRDLLPRRPRSEGGLGVPKLGPPRAKFMLEGLN 59 Query: 67 QVQKSLSQKG 76 ++++ L + G Sbjct: 60 ELRRQLQELG 69 >gi|78188846|ref|YP_379184.1| DNA photolyase, class 2 [Chlorobium chlorochromatii CaD3] gi|78171045|gb|ABB28141.1| Deoxyribodipyrimidine photo-lyase type II [Chlorobium chlorochromatii CaD3] Length = 459 Score = 154 bits (389), Expect = 3e-35, Method: Composition-based stats. Identities = 85/444 (19%), Positives = 145/444 (32%), Gaps = 42/444 (9%) Query: 8 SVHLVWLRNDLRITDNKALYAA---CHNSDAKVIAVFIATPEQWRQHGISARQSHFIYAS 64 V + W+ D R+ N AL A ++ VF P R ++ Sbjct: 22 GVVIYWMSRDQRVRHNWALLFARWKAAMLQQPLMVVFTLAPSFLGAPL---RHYDVLFNG 78 Query: 65 LLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLE 124 L +V+ L I F Q E L Y + + + + + Sbjct: 79 LQEVETELRALNIPFMVLQGEPS----EELPRYAMHHNASMVVADYSPLHLTRCWKNQVA 134 Query: 125 KRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL 184 + L V D ++P + P L+ + +P Sbjct: 135 EALS--VPLYEVDAHNIVPCRVASPKQEYAARTIRPKINKLLGEFLTPFPELEALPQPLT 192 Query: 185 TGPVTPSNIPRFFDYPFQAIDPMF-PIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS 243 PV + F + GE A L+ F ++K+ Y QR+ P+++ TS Sbjct: 193 EPPVNWQKLRSHFHADASVAPVGWLTAGEAGAHATLQCFVQQKLNGYATQRNDPSLEATS 252 Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELI----WREFYRHLMAFYP 299 +LSPYL G +S + ++K P+ ++L ELI + Y H A Y Sbjct: 253 RLSPYLHFGQISTQFVALQVKAAHA-----PQEDKDAFLEELIVRRELSDNYCHYNASYD 307 Query: 300 SVCMGKPFIPWTEKIEWNKDSHLLQA----WKQGYTGFPIIDAAMRQLNTIGWMHNRLRM 355 + G P D ++Q T P+ +AA +L G +H +RM Sbjct: 308 RLS-GIPAWAQETLARHATDPRDYIYSHEAFEQAKTHDPLWNAAQHELLQSGIIHGYMRM 366 Query: 356 ITASFLVKDLLVDWRIGEEYFM---SQLLDGDLASNNGGWQWAASTGNDS-------VPY 405 A +++ E LDG + G W+ +D Sbjct: 367 YWAKKILEWSRTPEEAFEIALWLNDRYALDGREPNGYVGVAWSIGGVHDRPWRERPVYGT 426 Query: 406 FRIFNPTIQGKRFDPQGTFIRHWL 429 R N ++FD ++ ++ Sbjct: 427 IRYMNANGCARKFD-----VKRYI 445 >gi|167009708|ref|ZP_02274639.1| deoxyribodipyrimidine photolyase [Francisella tularensis subsp. holarctica FSC200] gi|254367213|ref|ZP_04983243.1| deoxyribodipyrimidine photolyase [Francisella tularensis subsp. holarctica 257] gi|295313747|ref|ZP_06804324.1| deoxyribodipyrimidine photolyase [Francisella tularensis subsp. holarctica URFT1] gi|134253033|gb|EBA52127.1| deoxyribodipyrimidine photolyase [Francisella tularensis subsp. holarctica 257] Length = 164 Score = 154 bits (389), Expect = 3e-35, Method: Composition-based stats. Identities = 52/165 (31%), Positives = 75/165 (45%), Gaps = 2/165 (1%) Query: 279 FSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDA 338 S+L+ L W + + PS+ + + + +AWK G TG+P+IDA Sbjct: 2 RSFLSRLRWHCHFMQKLEDQPSIEYENLHSAYDQLRTELLNQQCFEAWKTGNTGYPMIDA 61 Query: 339 AMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAAST 398 MR L W++ R+R + SF L +DWR+ Y D + + Q + Sbjct: 62 CMRALIATRWLNFRMRAMLMSFASYHLWLDWRVTSLYLAGLFTDYEPGIHYSQVQMQ--S 119 Query: 399 GNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAP 443 G + RI+NP Q P G FIR WLPEL NV + IH P Sbjct: 120 GTTGINSIRIYNPIKQSIDQYPNGEFIRRWLPELENVSNENIHTP 164 >gi|193213030|ref|YP_001998983.1| deoxyribodipyrimidine photolyase [Chlorobaculum parvum NCIB 8327] gi|193086507|gb|ACF11783.1| deoxyribodipyrimidine photolyase [Chlorobaculum parvum NCIB 8327] Length = 459 Score = 154 bits (389), Expect = 3e-35, Method: Composition-based stats. Identities = 81/434 (18%), Positives = 140/434 (32%), Gaps = 36/434 (8%) Query: 8 SVHLVWLRNDLRITDNKALYAACHNSDA---KVIAVFIATPEQWRQHGISARQSHFIYAS 64 + W+ D R+ N AL A ++ + VF P R F++ Sbjct: 23 GTVIYWMSRDQRVRHNWALLFASQKANQLGQPLEVVFTLAPGFLGAP---MRHYDFMFRG 79 Query: 65 LLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLE 124 L +V+ L + G++F + + + + L Y + L + ++ RD E Sbjct: 80 LREVETRLRELGVLF----TALYGEPGKTLPEYAASRNAGALVA--DFSPLKLVRDWKQE 133 Query: 125 KRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQN-LVQADLRSLPVPAIR 183 D ++P + P L + L L + Sbjct: 134 VAPGLSCTFYEVDAHNIVPCWLASPKQEYAARTIRPKLNTLREEFLTDFPEPELQHQPDK 193 Query: 184 LTGPVTPSNIPRFFDYPFQAID-PMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGT 242 L PV + P GE A LR F ++ Y ++R+ P Sbjct: 194 LPPPVEWDEMETLLKVDRSVKAVPALEPGEAAAELHLRDFVDGRLSRYADERNDPNSGAV 253 Query: 243 SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNEL-IWREFYRHLMAFYPSV 301 S LSPYL G LS + ++ +++ EL I RE + + Sbjct: 254 SGLSPYLHFGQLSAQHAAFEAAR-----SKASEANREAFVEELFIRRELSENYCYYNERY 308 Query: 302 CMGKPFIPWTEKI------EWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRM 355 W +K + + + ++Q T P+ +AA QL G +H +RM Sbjct: 309 DSFDGIPEWAKKTLLEHTGDRRDAIYTPEQFEQAQTHDPLWNAAQTQLLETGVIHGYMRM 368 Query: 356 ITASFLVKDLLVDWRIGEEYFM---SQLLDGDLASNNGGWQWAASTGNDS-------VPY 405 A +++ + M LDG + G W+ +D Sbjct: 369 YWAKKILEWSATPAAAFDIALMLNDRYALDGRDPNGYVGVAWSIGGLHDRPWVERPIYGT 428 Query: 406 FRIFNPTIQGKRFD 419 R N ++FD Sbjct: 429 IRYMNANGCKRKFD 442 >gi|41055064|ref|NP_957358.1| hypothetical protein LOC394039 [Danio rerio] gi|32451837|gb|AAH54710.1| Zgc:66475 [Danio rerio] Length = 516 Score = 154 bits (388), Expect = 5e-35, Method: Composition-based stats. Identities = 72/434 (16%), Positives = 140/434 (32%), Gaps = 22/434 (5%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 L W+ D RI DN AL + + A+ + + I + + RQ F+ L +V K Sbjct: 74 LYWMSRDQRIQDNWALIYSQQLALAEKLPLHICFCLVPKFLDATYRQYAFMLKGLQEVVK 133 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130 I F + L ++ + + + ++ ++K L Sbjct: 134 ECKSLDIEFHLLSGEPVHN----LPAFVKSWNIGAVVTDFNPLRISLQWIDTVKKHLPSD 189 Query: 131 VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLR--SLPVPAIRLTGPV 188 + D ++P + +Q + + P A R + Sbjct: 190 IPFIQVDAHNVVPCWEASTKLEYGARTIRGKITKHLQEFLTDMPLVDTHPYCASRAAKII 249 Query: 189 TPSNIPRFFDYPFQAIDPMF-PIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSP 247 + + + + G + +L F ++++ + R+ P S LSP Sbjct: 250 DWEEVLSSLEVDHNVCEVEWAQPGTTGGMFMLESFIDQRLHIFATHRNNPNSDAVSHLSP 309 Query: 248 YLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPF 307 ++ G LS ++ ++K + + S + + + Y ++ + Sbjct: 310 WIHAGQLSAQRVVMQVKRK-KNASESVASFIEEIVVRRELADNFCFYNQNYDNISGAYDW 368 Query: 308 IPWTEKIEWNKDSHLLQAWKQ---GYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364 T + L K+ T + +AA RQL G MH LRM A +++ Sbjct: 369 AKKTLQEHAKDRRQYLYTKKELESAETHDQLWNAAQRQLLLEGKMHGFLRMYWAKKILEW 428 Query: 365 LLVDWR--IGEEYF-MSQLLDGDLASNNGGWQWAASTGNDS-------VPYFRIFNPTIQ 414 Y LDG + G W+ +D R N Sbjct: 429 TASPEEALSIAIYLNDRLSLDGCDPNGYVGCMWSICGIHDQGWAERPIFGKIRYMNYAGC 488 Query: 415 GKRFDPQGTFIRHW 428 ++FD + F R + Sbjct: 489 KRKFDVE-QFERKY 501 >gi|156752078|gb|ABU93791.1| cryptochrome 2 [Carassius auratus] Length = 164 Score = 153 bits (387), Expect = 5e-35, Method: Composition-based stats. Identities = 59/166 (35%), Positives = 79/166 (47%), Gaps = 3/166 (1%) Query: 273 KPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTG 332 K + S +L+WREF+ P + P +I W+K+ L W + TG Sbjct: 1 KTSTPPLSLYGQLLWREFFYTAATTNPRFDKMEG-NPICVRIPWDKNPEALAKWAEAKTG 59 Query: 333 FPIIDAAMRQLNTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGG 391 FP IDA M QL GW+H+ R A FL + DL + W G + F LLD D + N G Sbjct: 60 FPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWISWEEGMKVFEELLLDADWSVNAGS 119 Query: 392 WQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPT 437 W W S + +F + P G+R DP G FIR +LP L P Sbjct: 120 WMW-LSCSSFFQQFFHCYCPVGFGRRTDPNGDFIRRYLPILRGFPA 164 >gi|195026713|ref|XP_001986318.1| GH21292 [Drosophila grimshawi] gi|193902318|gb|EDW01185.1| GH21292 [Drosophila grimshawi] Length = 530 Score = 152 bits (385), Expect = 1e-34, Method: Composition-based stats. Identities = 77/447 (17%), Positives = 144/447 (32%), Gaps = 47/447 (10%) Query: 11 LVWLRNDLRITDNKALYAACHNS---DAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67 + W+ D R+ DN AL A + + + VF P+ R F+ L + Sbjct: 92 VYWMSRDARVQDNWALLFAQRLALKLELPLSVVFCLVPKFLNATL---RHYMFMLGGLQE 148 Query: 68 VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKL--LEK 125 V++ I FQ ++E L ++ + + + + + + R + + K Sbjct: 149 VEQQCRDLNISFQLLLGP----AVERLPAFVVAEEIGAVVC--DFAPLRLPRQWVTDVVK 202 Query: 126 RLQHRVICKSFDDSVLLPPG-----------SILNHALQMYKVYTPFRKALIQNLVQADL 174 L V D ++P +I N Y +I++ Sbjct: 203 ALPRNVPLTQVDAHNIVPLWVTSEKQEYAARTIRNKINSKLSEYLTEFPPVIKHPHGNGQ 262 Query: 175 RSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQR 234 + PV +T D+ G L +FC ++ Y+ E+R Sbjct: 263 KDKPVDWAAAEALLTCDRSVDVVDWA--------KPGYTAGSRQLYEFCTRRLRYFDEKR 314 Query: 235 DIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHL 294 + P S LSP+L G +S ++C ++ + + + + + Sbjct: 315 NDPTADALSGLSPWLHFGQISAQRCALEVQRYTSMHKASADAFCEEAIVRRELADNFCYY 374 Query: 295 MAFYPSV--CMGKPFIPWTEKIEWNKDS-HLLQAWKQGYTGFPIIDAAMRQLNTIGWMHN 351 Y S+ + E ++ + L+ +Q T + ++A QL G MH Sbjct: 375 NEHYDSLKGLHDWAYQTLQEHRTDERNPCYSLEELEQSRTYDDLWNSAQLQLVKEGKMHG 434 Query: 352 RLRMITASF---LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDS------ 402 LRM A + LDG + G W+ +D Sbjct: 435 FLRMYWAKKILEWTATPELALEYCILLNDKYSLDGRDPNGYVGCMWSIGGLHDQGWRERA 494 Query: 403 -VPYFRIFNPTIQGKRFDPQGTFIRHW 428 R N ++FD ++ W Sbjct: 495 IFGKIRFMNYQGCKRKFDVNA-YVMRW 520 >gi|464378|sp|P34205|PHR_CARAU RecName: Full=Deoxyribodipyrimidine photo-lyase; AltName: Full=DNA photolyase; AltName: Full=Photoreactivating enzyme gi|222872|dbj|BAA01987.1| DNA photolyase [Carassius auratus] Length = 556 Score = 152 bits (385), Expect = 1e-34, Method: Composition-based stats. Identities = 86/438 (19%), Positives = 150/438 (34%), Gaps = 30/438 (6%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 L W+ D R+ DN AL A + A+ + + I R + RQ F+ L +V K Sbjct: 111 LYWMSRDQRVQDNWALIYAQQLALAEKLPLHICFCLVPRYLDATYRQYAFMLKGLQEVAK 170 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130 I F + L S+ + + + + ++ + ++K L Sbjct: 171 ECKSLDIQFHLLSGEPGQN----LPSFVEKWKFGAVVTDFNPLRIPLQWIETVKKHLPAD 226 Query: 131 VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLR--SLPVPAIRLTGPV 188 V D ++P + L+ + + P A R PV Sbjct: 227 VPFIQVDAHNVVPCWEASGKLEYGARTIRGKITKLLPEFLTEIPLVDTHPHSASRAAEPV 286 Query: 189 TPSNIPRFFDYPFQAIDPMF-PIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSP 247 + + + + G +++L F +++ + R+ P S LSP Sbjct: 287 DWEEVLSSLEVERSVGEVDWAQPGTSGGMNMLESFIDQRLRLFATHRNNPNYDALSHLSP 346 Query: 248 YLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNEL-IWREFYRHLMAFYPSVCMGKP 306 ++ G LS ++ ++K E S++ EL + RE + + PS Sbjct: 347 WIHTGQLSAQRVVKQVKRE-----KNASESVASFIEELVVRRELADNFCFYNPSYDNISG 401 Query: 307 FIPWTEKI--EWNKDSHLLQAWKQ----GYTGFPIIDAAMRQLNTIGWMHNRLRMITASF 360 W +K + KDS K+ T + +AA RQL + G MH LRM A Sbjct: 402 AYDWAKKTLQDHAKDSRQYLYTKEQLENAKTHDQLWNAAQRQLVSEGKMHGFLRMYWAKK 461 Query: 361 LVKDLLVDWR---IGEEYFMSQLLDGDLASNNGGWQWAASTGNDS-------VPYFRIFN 410 +++ I LDG + G W+ +D R N Sbjct: 462 ILEWTASPEEALSIAIYLNDRLSLDGCDPNGYVGCMWSICGIHDQGWAERPIFGKIRFMN 521 Query: 411 PTIQGKRFDPQGTFIRHW 428 ++FD F R + Sbjct: 522 YAGCKRKFDV-AQFERKY 538 >gi|47212597|emb|CAF93039.1| unnamed protein product [Tetraodon nigroviridis] Length = 642 Score = 152 bits (385), Expect = 1e-34, Method: Composition-based stats. Identities = 65/340 (19%), Positives = 111/340 (32%), Gaps = 50/340 (14%) Query: 10 HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69 + W R LR+ DN AL A +D+ + V++ P + + F+ +L + Sbjct: 5 SVHWFRKGLRLHDNPALQEALSGADS-LRCVYVLDPWFAGAANVGINRWRFLLEALEDLD 63 Query: 70 KSLSQKGIVFQYHQCSNFDDSIEWLDS--------------------------------Y 97 SL + + D L Sbjct: 64 CSLKKLNSRLFVVRGQPTDVFPRLLKVGAGPVRSLVFQSADRAGAMIRASCRCLILSVCV 123 Query: 98 CLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH-RVICKSFDDSVLLPPGSIL-NHALQMY 155 + +VT+L + RD + K Q V + L I+ + Sbjct: 124 PQEWKVTRLTFEYDPRAYGKERDGAIIKMAQQFGVETIVRNSHTLYNLDRIVEMNNNSPP 183 Query: 156 KVYTPFRKALIQ-NLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQA---------ID 205 + F+ + + L + L S+ + G N + + P Sbjct: 184 LTFKRFQTIVSRLELPRRPLPSVTQQQMDKCGTPVADNHDQLYSIPSLEELGFRTGGLAP 243 Query: 206 PMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAI----QGTSQLSPYLSIGVLSPRQCWN 261 ++ GE AL LRK ++KV+ + + LSPYL G LS R + Sbjct: 244 AVWRGGESEALERLRKHLEKKVWVSHLEHSRANTCSLYASPAGLSPYLRFGCLSCRVFYY 303 Query: 262 RLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSV 301 L+E ++ L K S S +L+WREF+ P+ Sbjct: 304 NLREHYIRL-CKGCSPPLSLFGQLLWREFFYTAATNNPNF 342 Score = 100 bits (248), Expect = 7e-19, Method: Composition-based stats. Identities = 36/137 (26%), Positives = 57/137 (41%), Gaps = 29/137 (21%) Query: 353 LRMITASFLVK-DLLVDWRIGEEY---------------------FMSQLLDGDLASNNG 390 R A FL + DL + W G + F LLD D + N G Sbjct: 453 ARRAVACFLTRGDLWISWECGMKVGGAAWSRRRRRRLSARLLPQVFEELLLDADWSVNAG 512 Query: 391 GWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKN 450 W W S +F+ + P G+R DP G +IR ++P L + P +YI+ P + + Sbjct: 513 SWMW-LSCSAFFQQFFKCYCPVGFGRRTDPSGDYIRRYIPILKDYPNRYIYEPWNAPEAV 571 Query: 451 D------LSLNYPLPIV 461 + ++YP P++ Sbjct: 572 QKAANCVVGVDYPRPMI 588 >gi|298364134|gb|ADI79210.1| photolyase [Halococcus hamelinensis] Length = 263 Score = 152 bits (385), Expect = 1e-34, Method: Composition-based stats. Identities = 60/264 (22%), Positives = 102/264 (38%), Gaps = 12/264 (4%) Query: 66 LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125 +++ +G D E L + +F+N Y RD+ +E Sbjct: 1 DALREDYRDRGGGLVVAHG----DPAEELPRLADEHGAEAVFWNHDYTGLARERDRRVES 56 Query: 126 RLQHR-VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL 184 L + ++F D+V PG+I + Y V++ F K + ++ A+R Sbjct: 57 ALDDADIDHETFHDAVHHEPGAITTNDGDPYAVFSYFGKKWLDREKESSYPPPNGDALR- 115 Query: 185 TGPVTPSNIPRFFDYPFQAIDPMFP-IGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS 243 ++P D F D P G + A L FC+ + Y +R+ PA GTS Sbjct: 116 ---AGDDDLPTSDDLGFDEPDATPPEAGTEAARDRLDSFCEAAIGEYETEREYPARAGTS 172 Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKP-KSGAFSWLNELIWREFYRHLMAFYPSVC 302 +LS L G + R+ R+ E + ++ EL WREFY ++ + P V Sbjct: 173 RLSQDLKYGTIGIREVSERVAEAADRADGDDVRESIEAYREELAWREFYTQVLRYNPEVV 232 Query: 303 MGKPFIPWTEKIEWNKDSHLLQAW 326 + + + IEW + L Sbjct: 233 T-ENYSSYENPIEWRESDDDLDDG 255 >gi|168053729|ref|XP_001779287.1| PHR2b AtPHR2-like CDP DNA photolyase [Physcomitrella patens subsp. patens] gi|162669299|gb|EDQ55889.1| PHR2b AtPHR2-like CDP DNA photolyase [Physcomitrella patens subsp. patens] Length = 435 Score = 152 bits (385), Expect = 1e-34, Method: Composition-based stats. Identities = 64/371 (17%), Positives = 127/371 (34%), Gaps = 78/371 (21%) Query: 10 HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGI-----SARQSHFIYAS 64 +VW RNDLR+ DN+AL +A +S ++ V+ P + + + F++ Sbjct: 56 SIVWFRNDLRLHDNEALVSASRDS-LSILPVYCFDPRDYGNSSLGIDKNGPYRVKFLFEC 114 Query: 65 LLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVR------ 118 + ++ SL ++G E L L+ +++ E++ Sbjct: 115 VANLRSSLRERGSDLIVR----IGKPEEVLLDLAKSVGAESLYAHQEVAYGELQEGDFVA 170 Query: 119 -------------------------------RDKLLEKRLQHRVICKSFDDSVLLPPGSI 147 ++K+ + V K F L+ + Sbjct: 171 ISSNSYTPWLSHKGVAVKRSWNALNRGPFQAQEKVAAAFQDNGVETKFFWGGTLVHLEDL 230 Query: 148 LNHALQMYKVYTPFRKALIQNLVQADLRSL-PVPAIRLTGPVTPSNIPRFFDYPFQAIDP 206 M Y FR+ + V++ + +L + + G + P IP + Sbjct: 231 PFELDDMPSNYGGFREMVQNLAVRSTIEALQELKGLPACGNIEPGRIPFLQELGLNPAAD 290 Query: 207 MFP-----------IGEQNALHILRKFCKEKVYYYVEQR-------DIPAIQGTSQLSPY 248 M GE AL L ++ E + + + + ++SP+ Sbjct: 291 MRQEIQTSGGAVLMGGEDEALKKLDRYVLETSSSIAKNKQSETSADSLYGANFSCKISPW 350 Query: 249 LSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSW------------LNELIWREFYRHLMA 296 L++G LSPR+ + LK+ + P + L EL+WR+F+R + Sbjct: 351 LALGCLSPRRMFEDLKKSRSSAGVMPTLPVNTLGTGNEDHRLNWVLFELLWRDFFRFITK 410 Query: 297 FYPSVCMGKPF 307 Y + + + Sbjct: 411 KYGTEEKFREY 421 >gi|119357754|ref|YP_912398.1| deoxyribodipyrimidine photo-lyase type II [Chlorobium phaeobacteroides DSM 266] gi|119355103|gb|ABL65974.1| Deoxyribodipyrimidine photo-lyase type II [Chlorobium phaeobacteroides DSM 266] Length = 468 Score = 152 bits (383), Expect = 2e-34, Method: Composition-based stats. Identities = 81/449 (18%), Positives = 151/449 (33%), Gaps = 37/449 (8%) Query: 2 KATTAMSVHLVWLRNDLRITDNKALYAA---CHNSDAKVIAVFIATPEQWRQHGISARQS 58 + + W+ D R+ N AL A ++ VF P R Sbjct: 25 SCSDKPGAVIYWMSRDQRLNHNWALLFAREKAARKGQPLVVVFALAPSFLDAPF---RHY 81 Query: 59 HFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVR 118 F+ L + K+L + I F + + + Y Q + + + Sbjct: 82 DFMLKGLEETSKALERINIPFMLLEGEPDTE----ISRYACQSEAGAVVT--DFSPLNIS 135 Query: 119 RDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLP 178 R+ + + D ++P + + P +A + + LP Sbjct: 136 RNWKKKAADILDIPLYEVDAHNIVPCWYASDKQEYAARTLRPKLQARLDEFLVPFPTILP 195 Query: 179 VPAIRLTGPVTPSNIPRFFDYPFQAIDPM--FPIGEQNALHILRKFCKEKVYYYVEQRDI 236 +PA + R +++ P+ GE A L F K ++ Y R+ Sbjct: 196 LPAPHVHHRSPDWKQVRERLQKDRSVPPVNRIAPGETAAAESLENFIKSRLSGYATARND 255 Query: 237 PAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNEL-IWREFYRHLM 295 P SQLSPYL G +S + R+ E P+ ++L EL I RE + Sbjct: 256 PNSNALSQLSPYLHFGQISAQHVALRVAESRA-----PQKDKTAFLEELIIRRELSDNFC 310 Query: 296 AFYPSVCMGKPFIPWTEKI------EWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWM 349 + PS + W ++ + + + + +++ T + +AA +L G + Sbjct: 311 NYNPSYDRFEGIPAWAKQTLLLHGQDKREYLYTIDVFEKAATHDKLWNAAQSELVQSGKI 370 Query: 350 HNRLRMITASFLVKDLLVDWRIGE---EYFMSQLLDGDLASNNGGWQWAASTGNDS---- 402 H +RM A +++ E LDG + G W+ +D Sbjct: 371 HGYMRMYWAKKILEWSSSPPEAFEMAIYLNDRYALDGRDPNGYAGVAWSIGGLHDRPWFE 430 Query: 403 ---VPYFRIFNPTIQGKRFDPQGTFIRHW 428 R N + ++FD + +I + Sbjct: 431 RPVYGNIRYMNASGCRRKFDVE-RYISRF 458 >gi|294507782|ref|YP_003571840.1| deoxyribodipyrimidine photo-lyase [Salinibacter ruber M8] gi|294344110|emb|CBH24888.1| Deoxyribodipyrimidine photo-lyase [Salinibacter ruber M8] Length = 462 Score = 152 bits (383), Expect = 2e-34, Method: Composition-based stats. Identities = 75/442 (16%), Positives = 153/442 (34%), Gaps = 39/442 (8%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 L W+ R N AL A H++ + + + + R F+ L + ++ Sbjct: 24 LYWMEQSQRAQHNPALERALHHASETGLPLLVVCGVTDDFPEATLRHHTFLLEGLQETKQ 83 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130 L+ +G+ + + D ++ + + + +R Y ++ + + + R Sbjct: 84 RLADRGLKLVVREGAPDDVALAYAGAAAVLV------TDRGYLRHQRQWRARVAEEAPCR 137 Query: 131 VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLR--------SLPVPAI 182 V + + V++P ++ + A + P ++ +Q L + + Sbjct: 138 V--EQVEGDVVVPVETVTDKAEYAARTIRPKMHEHLERCLQLPEPVPVETPSLDLDIDSG 195 Query: 183 RLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGT 242 R + D A+ ++P G A IL F E + Y E R+ Sbjct: 196 RSLDDIEAVTDQMDLDRGVGAVSDLYPGGVSEAEAILDDFLAEHLDGYDENRNQIHSHAV 255 Query: 243 SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNEL-IWREFYRHLMAFYPSV 301 S +S YL G +SP +++ P+S S++ EL + RE + + F P Sbjct: 256 SHMSKYLHYGQISPVWLAQQVRRA-----EGPESDIESYIEELVVRRELTMNHVHFRPDT 310 Query: 302 CMGKPFIPWTEK-------IEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLR 354 +P + + + + L + G T P +AAM+++ G+MHN +R Sbjct: 311 YDSYTCLPEWARESLAEHADDEREYVYSLDELEGGTTHDPYWNAAMKEMRETGYMHNYMR 370 Query: 355 MITASF---LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSV------PY 405 M D + LDG ++ W + Sbjct: 371 MYWGKKILEWSPDPKTAYDRTLRLNNRYFLDGRDPNSFANVAWVFGLHDRGWKERPVYGK 430 Query: 406 FRIFNPTIQGKRFDPQGTFIRH 427 R + ++ DP ++ Sbjct: 431 VRYMSQGGLDRKADPDA-YVEK 451 >gi|153831330|ref|ZP_01983997.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae 623-39] gi|148873186|gb|EDL71321.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae 623-39] Length = 180 Score = 151 bits (382), Expect = 2e-34, Method: Composition-based stats. Identities = 58/159 (36%), Positives = 93/159 (58%), Gaps = 2/159 (1%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 + LVW R DLR DN AL AA ++ D V A++IATPEQW QH ++ Q+ I+ L ++ Sbjct: 1 MRLVWFRRDLRSFDNTALTAALNSGD-PVAAMYIATPEQWHQHHLAPIQADLIWRRLAEL 59 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128 Q+ L+ + Y Q ++F + + T++ NR YE++E +RD+ ++ L Sbjct: 60 QQELAALNVPLFYQQVADFQAAAVAVSQLAKTLNATQVLANRDYELDEQQRDQSAQQLLS 119 Query: 129 HRVICKS-FDDSVLLPPGSILNHALQMYKVYTPFRKALI 166 + I S FDD +LPPGS+ + +KV+TPF++A + Sbjct: 120 EQGITWSAFDDKCVLPPGSVRTKQGEFFKVFTPFKRAWL 158 >gi|147904876|ref|NP_001089127.1| CPD photolyase-like [Xenopus laevis] gi|77799777|dbj|BAE46749.1| CPD photolyase-like [Xenopus laevis] gi|126631428|gb|AAI33745.1| LOC733427 protein [Xenopus laevis] Length = 557 Score = 151 bits (382), Expect = 2e-34, Method: Composition-based stats. Identities = 75/445 (16%), Positives = 146/445 (32%), Gaps = 39/445 (8%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 + W+ D R+ DN A A + + + + + + + R F+ L +V + Sbjct: 122 VYWMSRDQRVQDNWAFLYAQRLALKQKLPLHVTFCLVPKFLDATIRHYGFMLKGLQEVAE 181 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130 + I F + + L ++ + + + ++ + + K L Sbjct: 182 ECKELNIPFHLL----IGYAKDILPNFVKDHAIGGVVTDFSPLRVPLQWVEDVGKCLPED 237 Query: 131 VICKSFDDSVLLPPG-SILNHALQMYKVYTPFRKALIQNLVQADLR-SLPVPAIRLTGPV 188 V D ++P + + + L Q L + P V Sbjct: 238 VPLVQVDAHNIVPCWVASIKQEYGARTIRRKVHDQLSQFLTEFPPVIKHPYEPKFEAETV 297 Query: 189 TPSNIPRFFDYPFQAIDPMF-PIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSP 247 + + + + G ++L+ F E++ ++ R+ P S LSP Sbjct: 298 DWDKCYKSLEVDRTVGEVEWAKPGTNAGFNVLQSFISERLKHFNSDRNNPNQNALSNLSP 357 Query: 248 YLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPF 307 + G LS ++ +++ K K S++ E + R FY K + Sbjct: 358 WFHFGQLSVQRAILEVQKY----RSKFKESVDSFVEEAVVRRELADNFCFY-----NKNY 408 Query: 308 IPWTEKIEWNKDS------------HLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRM 355 +W K++ + L+ + G T P+ +AA Q+ G MH LRM Sbjct: 409 DKIEGAYDWAKNTLKDHAKDKRTHLYTLEKLEAGKTHDPLWNAAQLQMVHEGKMHGFLRM 468 Query: 356 ITASFLVKDLLVDWR--IGEEYF-MSQLLDGDLASNNGGWQWAASTGNDS-------VPY 405 A +++ Y LDG + G W+ +D Sbjct: 469 YWAKKILEWTSSPEEALHFSLYLNDRYELDGRDPNGYVGCMWSICGIHDQGWAERAVFGK 528 Query: 406 FRIFNPTIQGKRFDPQGTFIRHWLP 430 R N ++FD F R + P Sbjct: 529 IRYMNYQGCKRKFDV-AQFERRYHP 552 >gi|66910424|gb|AAH97079.1| Cry4 protein [Danio rerio] Length = 418 Score = 151 bits (382), Expect = 2e-34, Method: Composition-based stats. Identities = 64/321 (19%), Positives = 122/321 (38%), Gaps = 25/321 (7%) Query: 5 TAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWR-QHGISARQSHFIYA 63 + ++HL R LR+ DN +L A +S A + V++ + + A + F+ Sbjct: 2 SHRTIHL--FRKGLRLHDNPSLLGALASSSA-LYPVYVLDRVFLQGAMHMGALRWRFLLQ 58 Query: 64 SLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLL 123 SL + L G S L Q +T++ Y+ + E R DK + Sbjct: 59 SLEDLDTRLQAIGSRLFVLCGST----ANILRELVAQWGITQISYDTEVEPYYTRMDKDI 114 Query: 124 EKRLQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAI 182 + Q + + L I+ + ++ L + + + V Sbjct: 115 QTVAQENGLQTYTCVSHTLYDVKRIVKANGGSPPLTYKKFLHVLSVLGEPEKPARDVSIE 174 Query: 183 RLTGPVTPSNIPRFFDYPFQA-------IDPMFPIGEQNALHILRKFCKEKVY--YYVEQ 233 VTP ++ R + P A + ++P GE +AL L K + + + + + Sbjct: 175 DFQRCVTPVDVDRVYAVPSLAHLGLQVEAEVLWPGGESHALQRLEKHFQSQGWVANFSKP 234 Query: 234 RDIPA--IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFY 291 R IP + T+ LSPYLS+G LS R +++ F + ++ Y Sbjct: 235 RTIPNSLLPSTTGLSPYLSLGCLSVRTFYHKYTRIFCPVRFGRRTDPQGEYLR-----KY 289 Query: 292 RHLMAFYPSVCMGKPFIPWTE 312 ++ +PS + +P+ + Sbjct: 290 LPVLKNFPSQYIYEPWKAPED 310 Score = 92.4 bits (228), Expect = 1e-16, Method: Composition-based stats. Identities = 30/90 (33%), Positives = 41/90 (45%), Gaps = 6/90 (6%) Query: 395 AASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDK----- 449 S Y RIF P G+R DPQG ++R +LP L N P+QYI+ P + Sbjct: 256 CLSVRTFYHKYTRIFCPVRFGRRTDPQGEYLRKYLPVLKNFPSQYIYEPWKAPEDVQLSA 315 Query: 450 -NDLSLNYPLPIVDHKKACHHTLNQYYAAK 478 + +YP PIV H +A L + Sbjct: 316 GCIIGKDYPRPIVSHIEASQRNLALMRQVR 345 >gi|332703027|ref|ZP_08423115.1| DNA photolyase, FAD-binding protein [Desulfovibrio africanus str. Walvis Bay] gi|332553176|gb|EGJ50220.1| DNA photolyase, FAD-binding protein [Desulfovibrio africanus str. Walvis Bay] Length = 465 Score = 151 bits (381), Expect = 2e-34, Method: Composition-based stats. Identities = 78/416 (18%), Positives = 137/416 (32%), Gaps = 30/416 (7%) Query: 8 SVHLVWLRNDLRITDNKALYAACH---NSDAKVIAVFIATPEQWRQHGISARQSHFIYAS 64 L W+ + R+ DN L A + D + + P+ RQ F+ A Sbjct: 20 GPVLYWMHREHRVNDNWGLLRARELAVDRDVPLAVAYGLAPDYLEA---GLRQYAFLLAG 76 Query: 65 LLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLE 124 L +V+ L GI F D E + V + ++ ++R L Sbjct: 77 LREVEHGLEAIGIPFFLL----LGDPAEVIPDLARYLAVGAIIT--DFDPLRIKRGWLKR 130 Query: 125 KRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL 184 + ++ + D ++P ++ + + P L+ + A P Sbjct: 131 IAAEVQIAVEEVDSRNIVPCRAVSEKKEWAARTFRPKIHRLLPEFLTAIPTLKPQTVPWN 190 Query: 185 TGPVTPSNIPRFFDYPFQAIDPMFPI---GEQNALHILRKFCKEKVYYYVEQRDIPAIQG 241 + GE A +L +F E++ Y R+ P Sbjct: 191 LDWPANDWSQAMDSLKVSSDVGRLSGPRSGELAAGALLAEFTAERLSGYAVGRNDPNGGA 250 Query: 242 TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNEL-IWREFYRHLMAFYPS 300 TS+LS +L G+LS ++ + + P+ ++L +L + RE + P+ Sbjct: 251 TSRLSAHLHFGMLSAQRVALVVIQA-----DAPQEDKDAFLEQLVVRRELAENFCLHEPA 305 Query: 301 VCMGKPFIPWTEKI--EWNKDSHLLQAWK----QGYTGFPIIDAAMRQLNTIGWMHNRLR 354 + F W + D + Q T P+ +AA R++ G+MH LR Sbjct: 306 YDSAESFPDWARRTLDAHQGDPRPYLYSRDELEQACTHDPLWNAAQREMLATGYMHGYLR 365 Query: 355 MITASF---LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFR 407 M A K + LDG + G WA +D R Sbjct: 366 MYWAKKILEWSKSPEEAMAVAVRLNDRWELDGRDPNGYAGLAWAIGGVHDRPWPER 421 >gi|148467519|gb|ABQ65680.1| antennal cryptochrome 1 [Spodoptera littoralis] Length = 348 Score = 150 bits (380), Expect = 4e-34, Method: Composition-based stats. Identities = 63/351 (17%), Positives = 120/351 (34%), Gaps = 37/351 (10%) Query: 10 HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69 ++W R+ LR+ DN +L++A +FI E + + ++ +L + Sbjct: 5 SVLWFRHRLRLHDNPSLHSALEEKGFPFFPIFIFDGESAGTKVVGYNRMRYLLEALDDLD 64 Query: 70 KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH 129 + G + + + KL + + E RD ++ + Sbjct: 65 NQFKKHGGRLIMLKGKPNV----VFRRLWEEFGIRKLCFEQDCEPVWRARDDSVKNACKE 120 Query: 130 -RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG-- 186 V+CK L P +++ + + + + + PV + TG Sbjct: 121 IGVVCKEHVSHTLWEPDTVIKANGGIPPLTY---QMFLHTVATIGDPPRPVGEVDFTGVK 177 Query: 187 ----PVTPSNIPRFFDYPFQAID------------PMFPIGEQNALHILRKFCKEKVY-- 228 P + N FD + D + GE AL +++ + Sbjct: 178 FGSLPESFYNEFTVFDKTPKPEDLGVFLENEDIRMIRWVGGETTALKQMQQRLAVEYETF 237 Query: 229 ---YYVEQRDIPAIQGTS-QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKP--KSGAFSWL 282 Y+ P + G LSP L G LS R + +++ F + + A ++ Sbjct: 238 LRGSYLPTHGNPDLLGPPISLSPALRFGCLSVRSFYWSVQDLFRQVHQGRLTSNSASHFI 297 Query: 283 -NELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDS-HLLQAWKQGYT 331 +LIWRE++ + P+ P I W + LQ W +G T Sbjct: 298 TGQLIWREYFYTMSVNNPNYG-QMAGNPICLDIPWKTPAGDELQRWVEGRT 347 >gi|325971354|ref|YP_004247545.1| DNA photolyase FAD-binding protein [Spirochaeta sp. Buddy] gi|324026592|gb|ADY13351.1| DNA photolyase FAD-binding protein [Spirochaeta sp. Buddy] Length = 459 Score = 150 bits (379), Expect = 5e-34, Method: Composition-based stats. Identities = 85/450 (18%), Positives = 153/450 (34%), Gaps = 39/450 (8%) Query: 1 MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHF 60 M A S + W++ R+ N+AL A ++A + + + G R F Sbjct: 13 MPVNKAGSFVVYWMQAAQRVRQNEALAFAIEQANALGKPLVVFFGLERSFAGAQERHYRF 72 Query: 61 IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120 + L +VQ+ L GI H + + ++ L +R Y E + Sbjct: 73 MLEGLAEVQQQLRLLGIPLWVHGDGIIPGLAKLVPF------ISVLVTDRAYTRVERQWR 126 Query: 121 KLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVP 180 K + + + +V++P ++ + +++I Q P+ Sbjct: 127 KQVASFVSC--PFYEVETNVIVPLEAVSDKEEYSAATLRRKIESMIAYFAQIVAIQKPLV 184 Query: 181 AIRLTGPV--------TPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVE 232 P+ T + + P GE A L +F + K+ Y Sbjct: 185 DGLSEEPLFACVNLGDTAMVLKALALGKMGGVCPHLVGGEIQAHQKLSQFIESKLSGYAI 244 Query: 233 QRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELI-WREFY 291 R+ P+ Q +S LSPYL G +S ++ ++E V+ +L ELI RE Sbjct: 245 HRNDPSQQFSSGLSPYLHFGQISAIDIYHAVREIEVE-------DVPVFLEELIVRRELA 297 Query: 292 RHLMAFYPSVCMGKPFIPWTEKIEWNKDSHL------LQAWKQGYTGFPIIDAAMRQLNT 345 + + F P + W +K + +Q T P +AA ++L Sbjct: 298 YNFVWFNPLYDAYEGLPSWAQKSLAFHEQDRRPILYSFAELEQAQTHDPYWNAAQKELTE 357 Query: 346 IGWMHNRLRMITASFLVKDLLVDWRIGEEYFM---SQLLDGDLASNNGGWQWAASTGNDS 402 +G MHN LRM +++ + +DG + G W + Sbjct: 358 LGTMHNYLRMYWGKKILEWSPSPKEAFMRALALNNTYQMDGRDPNGYAGVAWCFGKHDRP 417 Query: 403 V------PYFRIFNPTIQGKRFDPQGTFIR 426 R N ++F+ G R Sbjct: 418 WAERPIFGNIRYMNDKGLERKFNMSGYLAR 447 >gi|89255767|ref|YP_513129.1| deoxyribodipyrimidine photolyase [Francisella tularensis subsp. holarctica LVS] gi|89143598|emb|CAJ78782.1| deoxyribodipyrimidine photolyase [Francisella tularensis subsp. holarctica LVS] Length = 164 Score = 150 bits (379), Expect = 5e-34, Method: Composition-based stats. Identities = 51/165 (30%), Positives = 74/165 (44%), Gaps = 2/165 (1%) Query: 279 FSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDA 338 S+L+ L W + + PS+ + + + +AWK G TG+P+IDA Sbjct: 2 RSFLSRLRWHCHFMQKLEDQPSIEYENLHSAYDQLRTELLNQQCFEAWKTGNTGYPMIDA 61 Query: 339 AMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAAST 398 MR L W++ R+R + SF L +DWR+ Y D + + Q + Sbjct: 62 CMRALIATRWLNFRMRAMLMSFASYHLWLDWRVTSLYLAGLFTDYEPGIHYSQVQMQ--S 119 Query: 399 GNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAP 443 G + RI+NP Q P FIR WLPEL NV + IH P Sbjct: 120 GTTGINSIRIYNPIKQSIDQYPNVEFIRRWLPELENVSNENIHTP 164 >gi|303245763|ref|ZP_07332046.1| deoxyribodipyrimidine photolyase [Desulfovibrio fructosovorans JJ] gi|302493026|gb|EFL52891.1| deoxyribodipyrimidine photolyase [Desulfovibrio fructosovorans JJ] Length = 453 Score = 150 bits (379), Expect = 5e-34, Method: Composition-based stats. Identities = 92/450 (20%), Positives = 145/450 (32%), Gaps = 50/450 (11%) Query: 11 LVWLRNDLRITDNKALYAACH---NSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67 + W+ D R DN AL A S A ++ VF P G + RQ F+ A L + Sbjct: 22 VYWMSRDQRAADNWALLHAASLAGESGAPLVVVFALAPAY---PGATRRQYAFMLAGLAE 78 Query: 68 VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127 + +L I +L V ++ V+R + Sbjct: 79 TEAALRAHSIPLAVLTGEPGFTVPAFL------HSVDAGVCVTDFDPLRVKRVWKAAVAV 132 Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187 D + P P L+ ++ PA L G Sbjct: 133 ASPGALVEVDAHNVAPCFLASQKREYAAATLRPKIHRLLPEFLKPFPDLPTFPAANLDG- 191 Query: 188 VTPSNIPRFFDYPFQAIDPMFPI------GEQNALHILRKFCKEKVYYYVEQRDIPAIQG 241 P + D F DP P G A +L F ++++ Y +R+ P Sbjct: 192 FAPVDWRAAAD--FVQADPSVPPVTGIVPGSAAATQVLDDFLRDRLEGYAARRNDPNAGA 249 Query: 242 TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNEL-IWREFYRHLMAFYPS 300 TS LSPY G L+P++ E + K GA ++L EL + RE + + P Sbjct: 250 TSGLSPYFHFGQLAPQRAALATLE----ARSRAKEGADAFLEELVVRRELADNFCLYEPE 305 Query: 301 VCMGKPFIPWTEKI---------EWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHN 351 + W K + D T + +AA RQL+ G +H Sbjct: 306 YDSFEALPEWARKTLAAHAADSRPYLYDRETF---AAATTHSALWNAAQRQLSREGRIHG 362 Query: 352 RLRMITASFLVKDLLVDWRIGEEYF---MSQLLDGDLASNNGGWQWAASTGNDS------ 402 +RM A +++ E LDG + G W+ +D Sbjct: 363 YMRMYWAKKILEWSGSPREALETALFLNDRFALDGRDPNGVVGVLWSVGGLHDRPWANRP 422 Query: 403 -VPYFRIFNPTIQGKRFDPQGTFIRHWLPE 431 R N ++FD ++ + PE Sbjct: 423 VYGQVRYMNERGCRRKFDVDA-YVARY-PE 450 >gi|320355418|ref|YP_004196757.1| Deoxyribodipyrimidine photo-lyase type II [Desulfobulbus propionicus DSM 2032] gi|320123920|gb|ADW19466.1| Deoxyribodipyrimidine photo-lyase type II [Desulfobulbus propionicus DSM 2032] Length = 451 Score = 150 bits (378), Expect = 5e-34, Method: Composition-based stats. Identities = 87/451 (19%), Positives = 140/451 (31%), Gaps = 39/451 (8%) Query: 3 ATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAV---FIATPEQWRQHGISARQSH 59 A L W+ R DN AL A + + + F P RQ Sbjct: 5 AVHTSGPVLYWMHRAFRSRDNWALLHAAQQARYLGVPLAVAFCLAPTFLDATL---RQYD 61 Query: 60 FIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRR 119 F L + +SL++ I ++ + T ++ V+R Sbjct: 62 FFLNGLEETARSLAEANIPLILRSGDPAEEMVRLCTELTPALVAT------DFDPLRVKR 115 Query: 120 DKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNL--VQADLRSL 177 L R D ++P + M K + P +Q+ V L+ Sbjct: 116 QWLRTVTGHVRCPVHEVDSRNIVPAWIASDRREFMAKTFRPRIHRHLQDFLTVVPPLQPH 175 Query: 178 PVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPI-GEQNALHILRKFCKEKVYYYVEQRDI 236 P L G + + +P GE A L F +E++ Y QR+ Sbjct: 176 PHAWPTLPGSLDFPALRARLRVDRSVQPVSWPRSGEAAAWDTLDTFLRERLAGYG-QRND 234 Query: 237 PAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNEL-IWREFYRHLM 295 P S LSP+L G++S + + + S++ EL + RE + Sbjct: 235 PNQSVCSNLSPFLHFGMISSHAIVLEIGRRGLHGEV-----VDSFIEELVVRRELADNFC 289 Query: 296 AFYPSVCMGKPFIPWTEKI--EWNKDSHLLQA----WKQGYTGFPIIDAAMRQLNTIGWM 349 P F W ++ D + + T P+ +AA QL G M Sbjct: 290 LHTPDYDQISGFPEWAQRTLARHRHDPRPYVYDDAQFDRAQTHDPLWNAAQHQLVASGKM 349 Query: 350 HNRLRMITASF---LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDS---- 402 +RM A +D RI LDG + G W+ +D Sbjct: 350 AGYMRMYWAKKILEWSEDPAEALRIAIWLNDRYALDGRETNGYSGIAWSIGGVHDRGWTE 409 Query: 403 ---VPYFRIFNPTIQGKRFDPQGTFIRHWLP 430 R + ++FD +I W P Sbjct: 410 RPIFGTIRSMSEAGCRRKFDVN-RYIHTWTP 439 >gi|224004440|ref|XP_002295871.1| predicted protein [Thalassiosira pseudonana CCMP1335] gi|209585903|gb|ACI64588.1| predicted protein [Thalassiosira pseudonana CCMP1335] Length = 571 Score = 150 bits (378), Expect = 5e-34, Method: Composition-based stats. Identities = 73/255 (28%), Positives = 109/255 (42%), Gaps = 20/255 (7%) Query: 218 ILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKS- 276 L+ F + + +S+LS L++G LSPRQ + +K E L S Sbjct: 304 QLKLFVRHHAATAERNLCDVSGSHSSKLSVPLALGTLSPRQIYRYVKSEQEQLGNTTTSP 363 Query: 277 -GAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEK-----IEW---NKDSHLLQAWK 327 G +N L R+++ T EW + W Sbjct: 364 DGIAWIINHLEIRDYFLFESFLNGKAAYNLQGRRPTAHKPNVQREWLSLHDGQDAFTRWT 423 Query: 328 QGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLAS 387 G T P++DA M +L G++ NR+R S L KDL +DWR+G E+F L D D+A+ Sbjct: 424 SGKTNLPLVDAGMNELIATGYISNRIRQNIVSVLTKDLTIDWRLGAEWFQLALEDHDVAA 483 Query: 388 NNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPT-QYIHAPHSW 446 N G WQ+ A G D P R F Q R+D +G F+R W+ L + + + P ++ Sbjct: 484 NYGNWQYFAGVGGD--PKNRHFRTVSQAWRYDARGVFVRKWIDRLKDEDDIEVLLRPWAF 541 Query: 447 LDKNDLSLNYPLPIV 461 D+ PIV Sbjct: 542 RDE-------WAPIV 549 Score = 70.8 bits (172), Expect = 4e-10, Method: Composition-based stats. Identities = 28/187 (14%), Positives = 64/187 (34%), Gaps = 37/187 (19%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGI----------------- 53 L+W R DLR+ DN+ +++ AK+ ++F+ + Sbjct: 6 LIWHRRDLRLADNE-----LYSNAAKIYSLFVFDTADYTPRSTGISAGGDRGDDYVYNVN 60 Query: 54 -SARQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQY 112 + + ++ ++ +L G + +E + S + +V ++ ++ Sbjct: 61 NGPHFTRRLLEAVHSLRNNLRDLGGDLIVRHG----NPLEIIPSLAKELQVEEVAWSEVP 116 Query: 113 EINEVRRDKLLEKRL---------QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRK 163 E + + L++ L R IC S + L+ P + ++ P K Sbjct: 117 GYYEWVQSEKLKQILMDGADEGYAHRRKICTSV-TTTLMHPDDLPKDQPTWERLARPKEK 175 Query: 164 ALIQNLV 170 Q Sbjct: 176 RKKQKPA 182 >gi|83816766|ref|YP_445872.1| deoxyribodipyrimidine photolyase [Salinibacter ruber DSM 13855] gi|83758160|gb|ABC46273.1| deoxyribodipyrimidine photolyase [Salinibacter ruber DSM 13855] Length = 462 Score = 149 bits (377), Expect = 7e-34, Method: Composition-based stats. Identities = 75/442 (16%), Positives = 152/442 (34%), Gaps = 39/442 (8%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 L W+ R N AL A H++ + + + + R F+ L + ++ Sbjct: 24 LYWMEQSQRAQHNPALERALHHASETGLPLLVVCGVTDDFPEATLRHHTFLLEGLQETKQ 83 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130 L+ +G+ + + D ++ + + +R Y ++ + + + R Sbjct: 84 RLADRGLKLVVREGAPDDVALAHAGAAAVLV------TDRGYLRHQKQWRARVAEEAPCR 137 Query: 131 VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLR--------SLPVPAI 182 V + + V++P ++ + A + P ++ +Q L + + Sbjct: 138 V--EQVEGDVVVPVETVTDKAEYAARTIRPKIHEHLERCLQLPEPVPVETPSLDLDIDSG 195 Query: 183 RLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGT 242 R + D A+ ++P G A IL F E + Y E R+ Sbjct: 196 RSLDDIAAVTDQMDLDRGVGAVSDLYPGGVSEAEAILDDFLAEHLDGYDENRNQIHSHAV 255 Query: 243 SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNEL-IWREFYRHLMAFYPSV 301 S +S YL G +SP +++ P+S S++ EL + RE + + F P Sbjct: 256 SHMSKYLHYGQISPVWLAQQVRRA-----EGPESDIESYIEELVVRRELTMNHVHFRPDT 310 Query: 302 CMGKPFIPWTEK-------IEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLR 354 +P + + + + L + G T P +AAM+++ G+MHN +R Sbjct: 311 YDSYTCLPEWARESLAEHADDEREYVYSLDELEGGTTHDPYWNAAMKEMRETGYMHNYMR 370 Query: 355 MITASF---LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSV------PY 405 M D + LDG ++ W + Sbjct: 371 MYWGKKILEWSPDPKTAYDRTLRLNNRYFLDGRDPNSFANVAWVFGLHDRGWKERPVYGK 430 Query: 406 FRIFNPTIQGKRFDPQGTFIRH 427 R + ++ DP ++ Sbjct: 431 VRYMSQGGLDRKADPDA-YVEK 451 >gi|261047492|gb|ACX54505.1| cryptochrome 1 [Capsella bursa-pastoris] Length = 166 Score = 149 bits (377), Expect = 8e-34, Method: Composition-based stats. Identities = 62/166 (37%), Positives = 95/166 (57%), Gaps = 1/166 (0%) Query: 267 FVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAW 326 + + +L + RE+ R++ +P +P + + W D + +AW Sbjct: 2 ANEGNEAGEESVNLFLKSIGLREYSRYISFNHP-YSHERPLLGHLKFFPWAVDENYFKAW 60 Query: 327 KQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLA 386 +QG TG+P++DA MR+L GW+H+R+R++ +SF VK L + WR G +YF LLD DL Sbjct: 61 RQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLE 120 Query: 387 SNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPEL 432 S+ GWQ+ T DS + RI NP +G +FDP G ++R WLPEL Sbjct: 121 SDALGWQYITGTLPDSREFDRIDNPQFEGYKFDPNGEYVRRWLPEL 166 >gi|294670537|ref|ZP_06735417.1| hypothetical protein NEIELOOT_02259 [Neisseria elongata subsp. glycolytica ATCC 29315] gi|291307816|gb|EFE49059.1| hypothetical protein NEIELOOT_02259 [Neisseria elongata subsp. glycolytica ATCC 29315] Length = 235 Score = 149 bits (377), Expect = 8e-34, Method: Composition-based stats. Identities = 76/245 (31%), Positives = 109/245 (44%), Gaps = 28/245 (11%) Query: 226 KVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNEL 285 ++ Y Q PA +G SQLS + G LS R+ ++E G +WL+ Sbjct: 8 RLSDYPLQGGFPAKKGVSQLSAHFCFGTLSVREVCRNIRE--------SGQGGAAWLDGP 59 Query: 286 IWREFYRHLMAFYPSVCM-----GKPFIPWTEK----IEWNKDSHLLQAWKQGYTGFPII 336 R + R + F + G+ + W + E ++ L W++G TG PII Sbjct: 60 ARRAYCRRALPFSDGLLELTMKGGRAALHWLQLPKMIREPDRGGEALMRWQEGRTGVPII 119 Query: 337 DAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAA 396 DAAMR LN G +H LR + A FL L + GE F ++L D + A N+ WQ Sbjct: 120 DAAMRALNGGGSLHPALRRLCADFLTGRLNISAAHGEACFAARLTDYEYAVNHHNWQ--- 176 Query: 397 STGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNY 456 R+ NP + DP G FIR LPEL ++P +H PH + + Y Sbjct: 177 -------QVGRLNNPFAESLNLDPDGRFIRRHLPELAHLPASALHTPH-LAGSDVETNGY 228 Query: 457 PLPIV 461 P P V Sbjct: 229 PPPCV 233 >gi|158333885|ref|YP_001515057.1| deoxyribodipyrimidine photolyase [Acaryochloris marina MBIC11017] gi|158304126|gb|ABW25743.1| deoxyribodipyrimidine photolyase [Acaryochloris marina MBIC11017] Length = 465 Score = 149 bits (376), Expect = 9e-34, Method: Composition-based stats. Identities = 77/439 (17%), Positives = 154/439 (35%), Gaps = 34/439 (7%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 L W++ R N AL A ++ V + G + R F+ L ++ Sbjct: 26 LYWMQQSQRAEYNHALEYAIQRANDLQQPVVVCFGLMADYPGSNLRHYTFMLEGLQDTEQ 85 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130 +L Q+GI F + ++E + + +R Y + + + + + Sbjct: 86 ALIQRGIKFVMRYGNPDQIALELGK------DASLVVCDRGYLRFQRQWRDNVAQNAPCQ 139 Query: 131 VICKSFDDSVLLPPGSI------LNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL 184 V+ + V + S+ ++++ F VQ L + ++ L Sbjct: 140 VVQVESEVVVPVETASVKADYAARTIRPRIHRHLDRFLVPFASTPVQHSSLHLDLKSLDL 199 Query: 185 TGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244 + + D + +F G A IL KF ++ Y + R+ P S Sbjct: 200 SN-IEAVLAKLPLDCSVPPVSSLFQGGTTRAKEILEKFLQKSFAIYADHRNQPQTDDVSY 258 Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELI-WREFYRHLMAFYPSVCM 303 +S YL G +SP +++ + P+ +++ ELI RE + + P Sbjct: 259 MSQYLHFGQISPLYLALQIQ----SMGNVPRDNVDTYIEELIVRRELAMNFAYYTPDYDA 314 Query: 304 GKPFIPWTE------KIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMIT 357 W + + + + L+ + T P +AAMR++ G+MHN +RM Sbjct: 315 YSCLPNWAKTTLDNHRHDPRTPCYSLEQLDESRTEDPYWNAAMREMKHTGYMHNYMRMYW 374 Query: 358 ASF---LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQ 414 + + ++ + +DG A++ G W + IF Sbjct: 375 GKKIIEWTETPELAFQTALDLNNKYFIDGRDANSYTGVAWVFGVHDRGWRERPIFGTVRY 434 Query: 415 G------KRFDPQGTFIRH 427 ++ D G +I+ Sbjct: 435 MAASGLKRKCDIDG-YIKK 452 >gi|194757449|ref|XP_001960977.1| GF13637 [Drosophila ananassae] gi|190622275|gb|EDV37799.1| GF13637 [Drosophila ananassae] Length = 538 Score = 149 bits (376), Expect = 1e-33, Method: Composition-based stats. Identities = 72/438 (16%), Positives = 144/438 (32%), Gaps = 31/438 (7%) Query: 11 LVWLRNDLRITDNKALYAACHNS---DAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67 + W+ D R+ DN AL A + + + VF P+ R F+ L + Sbjct: 99 IYWMSRDGRVQDNWALLFAQRLALKLELPLAVVFCLVPKFLNAT---IRHYKFMMGGLQE 155 Query: 68 VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKL--LEK 125 V++ + I F +++ + + ++V + + V R + + K Sbjct: 156 VEQQCRELDIPFHLLLGP----AVDRIPEFVKSRKVGAVIC--DFAPLRVPRKWVDDVVK 209 Query: 126 RLQHRVICKSFDDSVLLPPGSILNHALQMYK-VYTPFRKALIQNLVQADL--RSLPVPAI 182 L V D ++P + + + L + L + + Sbjct: 210 ALPKTVPLVQVDAHNVVPVWVASDKQEYAARTIRNKINSKLSEYLTEFPPVVKHPHGTGC 269 Query: 183 RLTGPVTPSNIPRFFDYPFQAIDPMF-PIGEQNALHILRKFCKEKVYYYVEQRDIPAIQG 241 R PV + + + + G + A L +FC ++ + ++R+ P Sbjct: 270 RKVDPVDWTAAYEMLECDKSVDEVDWAKPGYKAACKQLYEFCSRRLRQFNDKRNDPLADA 329 Query: 242 TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSV 301 S LSP+L G +S ++C ++ ++ + + + + Y S+ Sbjct: 330 ISGLSPWLHFGQISAQRCALEVQRFRGQHKASAEAFCEEAIVRRELADNFCYYNEHYDSL 389 Query: 302 --CMGKPFIPWTEKIEWNKDS-HLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITA 358 + + +D + L+ ++ T + ++A QL G MH LRM A Sbjct: 390 KGLSSWAYQTLDAHRKDKRDPCYSLEEMEKALTYDDLWNSAQLQLVREGKMHGFLRMYWA 449 Query: 359 SF---LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDS-------VPYFRI 408 + LDG + G W+ +D R Sbjct: 450 KKILEWTETPEQALEYAILLNDKYSLDGRDPNGYVGCMWSIGGVHDMGWKERSIFGKIRY 509 Query: 409 FNPTIQGKRFDPQGTFIR 426 N ++FD IR Sbjct: 510 MNYQGCRRKFDVNAFVIR 527 >gi|318041065|ref|ZP_07973021.1| deoxyribodipyrimidine photo-lyase [Synechococcus sp. CB0101] Length = 251 Score = 149 bits (376), Expect = 1e-33, Method: Composition-based stats. Identities = 59/261 (22%), Positives = 99/261 (37%), Gaps = 17/261 (6%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M+ +VW R DLR++D+ AL AC + V+ VF+ + + + F+ +L Sbjct: 1 MACTVVWFRRDLRLSDHAALSEAC--NQGAVLPVFVLDRDLLFHPETAVARVAFMLNNLQ 58 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEIN-EVRRDKLLEK 125 + L Q+G D E L + + E RD + + Sbjct: 59 ALDADLRQRGGRLLIR----CGDPAEQLLQVVQLSGADGVIAHTDSERLVGRVRDARVSR 114 Query: 126 RLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185 L I + + P + + +A+ + A R + P + Sbjct: 115 TLAAHRIPLRW-----VEPAGACGELMAYSGWSRQWHQAMASPALPAPERVVVPPP---S 166 Query: 186 GPVTPSNIPRFFDYPFQA-IDPMFPIGEQNALHILRKFCKE-KVYYYVEQRDIPAIQGTS 243 + + +P + P+ P G AL L +FC+ Y + P+ + T+ Sbjct: 167 SALPDTPVPSLEALGLRPDAKPIPPGGTAAALKRLEQFCEGSASRSYYWELSYPSAKVTT 226 Query: 244 QLSPYLSIGVLSPRQCWNRLK 264 LSPYL GV+SPRQC RL Sbjct: 227 GLSPYLKFGVISPRQCLQRLA 247 >gi|298530238|ref|ZP_07017640.1| deoxyribodipyrimidine photolyase [Desulfonatronospira thiodismutans ASO3-1] gi|298509612|gb|EFI33516.1| deoxyribodipyrimidine photolyase [Desulfonatronospira thiodismutans ASO3-1] Length = 448 Score = 148 bits (374), Expect = 2e-33, Method: Composition-based stats. Identities = 81/442 (18%), Positives = 146/442 (33%), Gaps = 32/442 (7%) Query: 8 SVHLVWLRNDLRITDNKALYAA---CHNSDAKVIAVFIATPEQWRQHGISARQSHFIYAS 64 + W+ D RI DN AL A + + VF + RQ F+ Sbjct: 19 GPVIYWMSRDQRIKDNWALVHAQDLALHLSRPLRIVFCLADGFLQA---GLRQFDFMLRG 75 Query: 65 LLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLE 124 L + I + L +Y + R + L ++ +++ Sbjct: 76 LHECAGVAESLNIPLDLVRGEAGL----VLPAYLEKHRASFLVM--DFDPLRIKKSWQKA 129 Query: 125 KRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQ--ADLRSLPVPAI 182 + + D ++P S + P ++ ++ D++ P PA Sbjct: 130 VLDKTGIPAHLVDAHNIVPCWSTSQKQEYAARTIRPKIHRQLEEFLEDYPDVKPHPYPAQ 189 Query: 183 RLTGPVTPSNIPRFFDYPFQAIDPMF-PIGEQNALHILRKFCKEKVYYYVEQRDIPAIQG 241 TG V P + + D + G A +L F ++ Y EQR+ P +Q Sbjct: 190 AGTG-VDPDGLLQEMDLDKTITPVRWLSPGPAGAGEVLDDFMAHRLSLYHEQRNDPNMQV 248 Query: 242 TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSV 301 S LSPYL G S ++ ++K++ + ++ + + + H Y + Sbjct: 249 LSNLSPYLHFGHTSAQRVALQVKKQLDTPVQSREAFLEELIVRRELSDNFCHYNQNYDNF 308 Query: 302 CMGKPFIPWTEKIEWNKDSHLLQA----WKQGYTGFPIIDAAMRQLNTIGWMHNRLRMIT 357 G P + DS +QG T P+ +AA ++ G MH +RM Sbjct: 309 -QGLPAWAQKTLDKHRSDSRDYLYEPQALEQGLTHDPLWNAAQTEMVKSGKMHGYMRMYW 367 Query: 358 ASF---LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDS-------VPYFR 407 A + LDG + G W+ +D R Sbjct: 368 AKKILEWSRSPEQAIDTAIYLNDKYELDGRDPNGYTGIMWSIGGVHDRGWKERKIFGTVR 427 Query: 408 IFNPTIQGKRFDPQGTFIRHWL 429 N ++F+ +I+ W+ Sbjct: 428 YMNYNGCRRKFNVDA-YIQKWI 448 >gi|110680064|ref|YP_683071.1| deoxyribodipyrimidine photo-lyase, putative [Roseobacter denitrificans OCh 114] gi|109456180|gb|ABG32385.1| deoxyribodipyrimidine photo-lyase, putative [Roseobacter denitrificans OCh 114] Length = 468 Score = 148 bits (374), Expect = 2e-33, Method: Composition-based stats. Identities = 69/279 (24%), Positives = 111/279 (39%), Gaps = 26/279 (9%) Query: 204 IDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQG----TSQLSPYLSIGVLSPRQC 259 + +FP + AL L F + Y +R+ G S LSPYL +++ + Sbjct: 69 MSQLFPPSHRAALERLTAFVPKAGRDYAARRNYDLGPGNHTHVSTLSPYLRCRLITESEV 128 Query: 260 WNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPF---IPWTEKIEW 316 N + + A ++ E+ WR +++ + P+V W + Sbjct: 129 VNAVLHRH------SPAAAEKFVQEVFWRTYWKGWLELRPAVWTQYQMALDQAWNDVQTQ 182 Query: 317 NKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYF 376 + +G TG DA R+L G++HN RM AS + L + W +G ++F Sbjct: 183 AGLRARWENACRGETGIHCFDAWARELVETGYLHNHARMWFASIWIFTLELPWELGADFF 242 Query: 377 MSQLLDGDLASNNGGWQWAASTGNDSVPYF-RIFNPTIQGK-RFDPQGTFIRHWLPELNN 434 + LLDGD ASN GW+W A Y R N + + RF P+ +P Sbjct: 243 LRHLLDGDPASNTLGWRWVAGIQTQGKTYLARTSNISKFTENRFHPKWQLAGEAIPRHAP 302 Query: 435 VPTQYIHAPHS-----------WLDKNDLSLNYPLPIVD 462 +P + P L + DLS + L +VD Sbjct: 303 LPPEPRSLPAGDAFDPALRTGFLLHEEDLSPGFFLNMVD 341 >gi|39997921|ref|NP_953872.1| deoxyribodipyrimidine photolyase [Geobacter sulfurreducens PCA] gi|39984866|gb|AAR36222.1| deoxyribodipyrimidine photolyase, putative [Geobacter sulfurreducens PCA] gi|298506859|gb|ADI85582.1| deoxyribodipyrimidine photolyase, putative [Geobacter sulfurreducens KN400] Length = 461 Score = 148 bits (374), Expect = 2e-33, Method: Composition-based stats. Identities = 85/447 (19%), Positives = 150/447 (33%), Gaps = 41/447 (9%) Query: 6 AMSVHLVWLRNDLRITDNKALYAA---CHNSDAKVIAVFIATPEQWRQHGISARQSHFIY 62 + W+ D R+ DN AL A A + +F P ARQ F+ Sbjct: 16 TAGPVIYWMSRDQRVADNWALIHAQKLALARSAPLGVLFCLAPRFLGAT---ARQYRFML 72 Query: 63 ASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKL 122 L QV+ +L++ I F + ++ + RV+ L ++ V+R+ Sbjct: 73 KGLEQVRAALNRLDIPFFLVTGDPKG----AVAAFTRRHRVSYLVT--DFDPLRVKREWK 126 Query: 123 LEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAI 182 + + + D ++P P L+ + ++ P Sbjct: 127 RQVAGEISIPFDEVDAHNIVPCWITSQRQEWGAYTIRPKIHRLLPDFMEPFPPLQRHPFP 186 Query: 183 RLTGPVTPSNIPRFF-----DYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIP 237 + + F D + GE+ A L +F ++ + Y +R+ P Sbjct: 187 WQGALPSDAEWRETFTGMTLDESVPEV-SWLASGEEAAQAALARFLEDGLAGYATRRNNP 245 Query: 238 AIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELI-WREFYRHLMA 296 A+ G S LSP+L G LS + + P ++L ELI RE + Sbjct: 246 AVMGQSGLSPWLHFGQLS-----AQRVAQAAFAAAAPIESRDAFLEELIVRRELADNFCY 300 Query: 297 FYPSVCMGKPFIPWTEKI--EWNKDS----HLLQAWKQGYTGFPIIDAAMRQLNTIGWMH 350 + + F W ++ D + +QG T + +AA ++ G MH Sbjct: 301 YNDAYDRFDGFPEWAQRTLNRHRHDPRPQCYEHDVLEQGQTHDSLWNAAQLEMVRWGRMH 360 Query: 351 NRLRMITASFLVKDLLVDW---RIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSV---- 403 LRM A L++ I + LDG + G W+ +D Sbjct: 361 GYLRMYWAKKLLEWTSSPEDALMIAIQLNDRYQLDGRDPNGYAGIAWSIGGVHDRPWAER 420 Query: 404 ---PYFRIFNPTIQGKRFDPQGTFIRH 427 R + ++FD + R Sbjct: 421 PVFGTIRFMSRDGCRRKFDTDA-YERR 446 >gi|320109156|ref|YP_004184746.1| DNA photolyase FAD-binding protein [Terriglobus saanensis SP1PR4] gi|319927677|gb|ADV84752.1| DNA photolyase FAD-binding protein [Terriglobus saanensis SP1PR4] Length = 479 Score = 148 bits (373), Expect = 2e-33, Method: Composition-based stats. Identities = 87/446 (19%), Positives = 151/446 (33%), Gaps = 37/446 (8%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 + W++ R DN AL A +D + V + R HF+ LL V+ Sbjct: 35 VYWMQRAQRGRDNAALNLAVQIADELGLPVVTYFAGISNFPHANLRHYHFLQQGLLDVEN 94 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130 L+++GI F +++ + + N +R + + Sbjct: 95 DLAERGIGFVLRNAPE-CSPVQFFADAHAAIVIG--------DENPLRAMERWRSMVAKN 145 Query: 131 VIC--KSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188 + + D V++P + + +K L + L PA P Sbjct: 146 IEVPYWTIDTDVIVPSKLLEKAQYAARTIRPRLKKFLPEFLHLVKSIDNSAPAKEWQQPR 205 Query: 189 TPSNIPRFFDYPFQAID--------PMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ 240 + D Q D + G A L F K + Y +R+ P Sbjct: 206 GLRHDKLSIDMTKQWPDLDRSVLPVDEWNGGSGAAYKRLHLFTKN-LGNYDRERNHPETD 264 Query: 241 GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPS 300 GTS LSP+L G + P +++ SG + WRE + + + P+ Sbjct: 265 GTSMLSPFLHFGHIGPLTIALAVRKAIQTNPAAKVSGEAYLDQLITWRELCINFVKYEPN 324 Query: 301 VCMGKPFIPWTEKI--EWNKDS----HLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLR 354 PW + E +D + L+ ++ T + +A+ RQ+ GWMHN +R Sbjct: 325 YDTAACADPWAKVTIGEHARDERSPLYSLEQLERAETYDELWNASQRQMVYRGWMHNYMR 384 Query: 355 MITASFLVKD---LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSV-------P 404 M A +++ + V + LDG + G WA D Sbjct: 385 MYWAKKILEWSPSVDVAFERAVHLNDRYFLDGRDPNGYGSIAWALVGKFDRAWGERPIFG 444 Query: 405 YFRIFNPTIQGKRFDPQGTFIRHWLP 430 R + G++FD + +I P Sbjct: 445 KIRYMSGASTGRKFDSK-KYIAQNPP 469 >gi|294102825|ref|YP_003554683.1| deoxyribodipyrimidine photolyase [Aminobacterium colombiense DSM 12261] gi|293617805|gb|ADE57959.1| deoxyribodipyrimidine photolyase [Aminobacterium colombiense DSM 12261] Length = 456 Score = 148 bits (373), Expect = 2e-33, Method: Composition-based stats. Identities = 89/444 (20%), Positives = 162/444 (36%), Gaps = 30/444 (6%) Query: 12 VWLRNDLRITDNKALYAACHNS---DAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 W+ D R+ DN AL A + ++ VF TP S R HF+ L +V Sbjct: 20 YWMNRDQRVEDNWALLEAQKYALLNKKPLLVVFCLTPHFL---SASYRAYHFMLHGLHEV 76 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128 ++ L I F + ++ L + + V+ LF + ++++ + + + Sbjct: 77 RQGLLGLNIPFILLE----QEAPLSLPNLIKKIDVSALFT--DFSPLRIKKEWVEQIKKD 130 Query: 129 HRVICKSFDDSVLLPPGSILNHALQMYKVYTP-FRKALIQNLVQAD-LRSLPVPAIRLTG 186 + D ++P + + P K + L L P Sbjct: 131 IAIPFYEIDAHNIVPCWEASTKKEYSARTFRPRILKKVPDFLTPIPSLIRHPYNETLALK 190 Query: 187 PVTPSNIPRFFDYPFQAIDPMF--PIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244 P + + YP + + P++ G + L+KF K+K+ Y E R+ P SQ Sbjct: 191 TAAPLEMLTKYHYPQKTL-PLYGGKAGYTAGMECLQKFIKKKLRVYKELRNDPTNNVLSQ 249 Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELI-WREFYRHLMAFYPSVCM 303 LSP+L G ++P++ +K+ + + S+L ELI RE + + PS Sbjct: 250 LSPFLHFGQIAPQRVAIVIKKHGEN-HESIRDSVDSFLEELIVRRELADNFCFYTPSYDC 308 Query: 304 GKPFIPWTEKI--EWNKDSHLLQAW----KQGYTGFPIIDAAMRQLNTIGWMHNRLRMIT 357 + F W +K E D + G T + +A + G +H+ LRM Sbjct: 309 FEGFPQWAQKTLDEHRWDPRKFTYTLEELEHGKTHDQLWNACQLDILFHGKLHSWLRMYW 368 Query: 358 ASF---LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSV-PYFRIFNPTI 413 A K + +DG + G W+ +D P +IF Sbjct: 369 AKKILEWSKSPEEAMKAAIYLNDCYEIDGRDPNGYAGIAWSIGGVHDRAWPERQIFGKIR 428 Query: 414 QGKRFDPQGTF-IRHWLPELNNVP 436 + F ++ ++ + + P Sbjct: 429 YMNDSGAKRKFHVKQYIESITSNP 452 >gi|110596745|ref|ZP_01385035.1| deoxyribodipyrimidine photolyase [Chlorobium ferrooxidans DSM 13031] gi|110341432|gb|EAT59892.1| deoxyribodipyrimidine photolyase [Chlorobium ferrooxidans DSM 13031] Length = 450 Score = 147 bits (372), Expect = 3e-33, Method: Composition-based stats. Identities = 85/444 (19%), Positives = 148/444 (33%), Gaps = 36/444 (8%) Query: 6 AMSVHLVWLRNDLRITDNKALYAACHNSDA---KVIAVFIATPEQWRQHGISARQSHFIY 62 A + W+ D R+ N AL A ++ + VF P R F+ Sbjct: 16 ASGPVIYWMSRDQRVRHNWALLFARKKAEQLQQPLKVVFTLAPSFLNAPL---RHYDFML 72 Query: 63 ASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKL 122 L +V+++L + I F Q + L + + + + + ++ R+ Sbjct: 73 KGLHEVERALRRLNIPFYLVQGEPEIE----LPRFAREMKAGAVVT--DFSPLKISREWK 126 Query: 123 LEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAI 182 + D ++P + + P K+L+ L+ + P+ A Sbjct: 127 RRVGAHLPLPLYEVDAHNIVPCRIASAKQEYAARTFRPKIKSLLGELLTGFPQLEPLEAT 186 Query: 183 RLTGPVTPSNI-PRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQG 241 + PV S+I A GE+ A + L F ++++ Y E R+ P Sbjct: 187 TESHPVDWSSISCSLKADHRVAPVEWLKPGEEAAANCLDTFLEKRLSSYAELRNDPNSGV 246 Query: 242 TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSV 301 S LSPYL G +S + R+ E + P ++L ELI R FY Sbjct: 247 LSNLSPYLHFGQISAQYIALRVSESRM-----PDESRSAFLEELIVRRELSDNYCFYNDR 301 Query: 302 CMGKPFIPWTEK---IEWNKDSHLLQA----WKQGYTGFPIIDAAMRQLNTIGWMHNRLR 354 P K + D + T + +AA +L T G +H +R Sbjct: 302 YDSFDGSPTWAKESLMNHRNDHREYLYTADEFATAKTHDRLWNAAQLELVTTGKIHGYMR 361 Query: 355 MITASF---LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDS-------VP 404 M A + + LDG + G W+ +D Sbjct: 362 MYWAKKILEWSESAEQAFETAMALNDRYALDGRDPNGYAGVAWSIGGVHDRPWFERPVYG 421 Query: 405 YFRIFNPTIQGKRFDPQGTFIRHW 428 R N + ++FD +I + Sbjct: 422 KIRYMNASGCARKFDV-ARYIARF 444 >gi|195431012|ref|XP_002063542.1| GK19412 [Drosophila willistoni] gi|194159627|gb|EDW74528.1| GK19412 [Drosophila willistoni] Length = 534 Score = 147 bits (372), Expect = 3e-33, Method: Composition-based stats. Identities = 72/437 (16%), Positives = 136/437 (31%), Gaps = 29/437 (6%) Query: 11 LVWLRNDLRITDNKALYAACHNS---DAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67 + W+ D RI DN AL A + D + VF P+ R F+ L + Sbjct: 97 VYWMSRDGRIQDNWALLFAQRLALKLDLPLAVVFCLVPKFLNATL---RHYKFMLGGLKE 153 Query: 68 VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKL--LEK 125 V+K I F E L + + + + V R + + K Sbjct: 154 VEKECRDLNIGFHLLLGPAR----EELPKFVRDNDIGAVIC--DFAPLRVPRQWVEDVTK 207 Query: 126 RLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185 L V D ++P + + + + + P + + Sbjct: 208 GLPKDVPFTQVDAHNIVPLWVASDKQEYAARTIRNKINSKLGEYLTEFPVVAKHPHGKSS 267 Query: 186 GPVTPSNIPRFFDYPFQAIDPMF-PIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244 + ++ + + + G A L +FC ++ + QR+ P S Sbjct: 268 AKINWTSAYEMLECDKSVDEVEWAQPGYNAACRQLYEFCTRRLGKFHNQRNNPTADALSG 327 Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSV--C 302 LSP+L G +S ++C +K ++ + + + + Y S+ Sbjct: 328 LSPWLHFGQISAQRCVLEVKRYAKQHKASTEAFCEETIVRRELADNFCYYNENYDSLKGV 387 Query: 303 MGKPFIPWTEKIEWNKDS-HLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASF- 360 + + +D + L+ + T + ++A QL G MH LRM Sbjct: 388 TSWAYQSLDAHRKDPRDPCYKLEDLETARTYDDLWNSAQLQLVKEGKMHGFLRMYWGKKI 447 Query: 361 --LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSV-------PYFRIFNP 411 + LDG + G W+ +D+ R N Sbjct: 448 LEWTESPEQALEWTILLNDKYSLDGRDPNGYVGCMWSIGGIHDTAWKERPIFGKVRYMNY 507 Query: 412 TIQGKRFDPQGTFIRHW 428 ++FD F+ + Sbjct: 508 QGCKRKFDVNA-FVARY 523 >gi|242278435|ref|YP_002990564.1| deoxyribodipyrimidine photolyase [Desulfovibrio salexigens DSM 2638] gi|242121329|gb|ACS79025.1| deoxyribodipyrimidine photolyase [Desulfovibrio salexigens DSM 2638] Length = 445 Score = 147 bits (372), Expect = 3e-33, Method: Composition-based stats. Identities = 81/447 (18%), Positives = 148/447 (33%), Gaps = 36/447 (8%) Query: 2 KATTAMSVHLVWLRNDLRITDNKALYAA--CHNSDAKVIAVFIATPEQWRQHGISARQSH 59 A + + W+ + R+ DN L A +I VF P R Sbjct: 14 SAEISGGPIVYWMSREQRVFDNWGLLHARELAGDKVPLIVVFCLVPSFLGATL---RHYD 70 Query: 60 FIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRR 119 F+ + QV+K L + G F E L ++ R + + + + Sbjct: 71 FMLNGMQQVEKDLRKLGYDFVLLSGQPD----ETLPAFVSNIRAGAVVTDFDPLRIKQQW 126 Query: 120 DKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPV 179 + + +++ + D ++P + + + P + L+ ++ Sbjct: 127 QENVGQKID--IPLLEVDGHNIVPARFVTDKREYGARTIRPKIQRLLPEFLEEFPELASA 184 Query: 180 PAIRLTGPVTPSNIPRFFDYPFQAIDPM-FPIGEQNALHILRKFCKEKVYYYVEQRDIPA 238 PV R + + P+ GE A L +F + Y E+R+ P Sbjct: 185 EVKGEGFPVVDWKQVRSSIKVDETVGPVDLIPGESAAHAALDEFVTYGLGAYAEKRNDPN 244 Query: 239 IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNEL-IWREFYRHLMAF 297 + TS+LS Y G L+P++ + S+L EL I RE + Sbjct: 245 AEATSRLSAYYHFGQLAPQRAALEVAAR------PTGESVDSYLEELIIRRELSDNFCLH 298 Query: 298 YPSVCMGKPFIPWTEKIEWNKDSHL------LQAWKQGYTGFPIIDAAMRQLNTIGWMHN 351 P+ W +K + + ++Q T + +AA Q+ G+MH Sbjct: 299 TPNYDSLDAAPEWAQKTLSEHSADRRAYLYSYEDFEQARTHSALWNAAQSQMVHSGFMHG 358 Query: 352 RLRMITASFLVKDLLVDWR---IGEEYFMSQLLDGDLASNNGGWQWAASTGNDS------ 402 +RM A +++ I LDG + G W+ +D Sbjct: 359 YMRMYWAKKILEWSASAEEALSITIALNDRFELDGRDPNGYVGALWSIGGVHDRGWKKRS 418 Query: 403 -VPYFRIFNPTIQGKRFDPQGTFIRHW 428 R N ++FD ++R W Sbjct: 419 VFGSIRYMNERGCRRKFDVDA-YVRKW 444 >gi|195401525|ref|XP_002059363.1| GJ17708 [Drosophila virilis] gi|194142369|gb|EDW58775.1| GJ17708 [Drosophila virilis] Length = 530 Score = 147 bits (371), Expect = 4e-33, Method: Composition-based stats. Identities = 71/439 (16%), Positives = 136/439 (30%), Gaps = 31/439 (7%) Query: 11 LVWLRNDLRITDNKALYAACHNS---DAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67 L W+ D R+ DN AL A + + + VF P+ R F+ L + Sbjct: 92 LYWMSRDARVQDNWALLFAQRLALKLELPLTVVFCLVPKFLNATL---RHYKFMLGGLQE 148 Query: 68 VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD--KLLEK 125 V++ + I FQ + E L + + + + + + R + K Sbjct: 149 VEQQCHELNISFQLLLGP----AAERLPEFVTAEDIGAVIC--DFAPLRLPRQWVADVVK 202 Query: 126 RLQHRVICKSFDDSVLLPPG-SILNHALQMYKVYTPFRKALIQNLVQADLR-SLPVPAIR 183 L V D ++P + + L + L + P + Sbjct: 203 ALPGHVPLTQVDAHNIVPLWVTSEKQEYAARTIRNKINSKLGEFLSEFPPVIRHPHGKGQ 262 Query: 184 LTGPVTPSNIPRFFDYPFQAIDPMF-PIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGT 242 + + G L +FC ++ ++ E+R+ P Sbjct: 263 AKESTDWTAAYALLSCDKTVDAVDWAKPGYTAGCRQLYEFCTRRLRHFNEKRNDPTADAL 322 Query: 243 SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSV- 301 S LSP+L G +S ++C ++ + + + + + Y S+ Sbjct: 323 SGLSPWLHFGQISAQRCILEVQRYSAMHKASADAFCEEAIVRRELADNFCYYNEHYDSLK 382 Query: 302 -CMGKPFIPWTEKIEWNKDS-HLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITAS 359 + + + + L+ +Q T + ++A QL G MH LRM A Sbjct: 383 GLHDWAYQTLQAHRKDKRSPCYTLEELEQARTYDDLWNSAQLQLVKEGKMHGFLRMYWAK 442 Query: 360 F---LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDS-------VPYFRIF 409 + + LDG + G W+ +D R Sbjct: 443 KILEWTETPELALEYSILLNDKYSLDGRDPNGYVGCMWSIGGVHDQGWKERDIFGKIRYM 502 Query: 410 NPTIQGKRFDPQGTFIRHW 428 N ++FD F+ + Sbjct: 503 NYQGCKRKFDINA-FVMRY 520 >gi|313228121|emb|CBY23271.1| unnamed protein product [Oikopleura dioica] Length = 361 Score = 147 bits (371), Expect = 4e-33, Method: Composition-based stats. Identities = 74/337 (21%), Positives = 122/337 (36%), Gaps = 37/337 (10%) Query: 10 HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGIS---ARQSHFIYASLL 66 L R D R+ DN AA SD K+I FI TPEQ S F+ SL Sbjct: 7 ALFIFRRDYRLFDNVGWIAAAKASD-KIIPAFIFTPEQIDASKNSYKNDNCVQFMIESLK 65 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 + K L K +F D I + V ++ N Y +RD +E Sbjct: 66 DLDKQLEGKLSLFYGANTVVVADLIS-------EFGVDAVYVNADYTPYSKKRDADIEAI 118 Query: 127 L-QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185 +H+V S D L+ PG I+ K F +++ + + + + ++ Sbjct: 119 CDEHQVPFVSSHDMCLVDPGEIVIKEGT--KFEPSFFNKVMELKTRKSEAAPEISSEKVK 176 Query: 186 GPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILR-----KFCKEKVYYYVEQRD--IPA 238 + + ++ + G AL I+ KF K+ R+ P Sbjct: 177 KSEFSIDWKKTKEFYDKNDKIELKGGRSVALKIIEKVKSDKFQKQYGCVPTAFREGTFPK 236 Query: 239 IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFY 298 ++ T++L+ YL G +S R+ EEF L + + + I R+++ H+ + Sbjct: 237 MK-TTELAAYLRFGCVSTREVV----EEFEKLNKR------MLITQTIRRDYWVHMFHNF 285 Query: 299 PSVC----MGKPFIPWTEKIEWNK-DSHLLQAWKQGY 330 P GK E IE + + G Sbjct: 286 PHQMGIGKPGKCLKLKFEDIECRDGNPSRHGTARHGT 322 >gi|167524661|ref|XP_001746666.1| hypothetical protein [Monosiga brevicollis MX1] gi|163774936|gb|EDQ88562.1| predicted protein [Monosiga brevicollis MX1] Length = 884 Score = 147 bits (370), Expect = 4e-33, Method: Composition-based stats. Identities = 84/453 (18%), Positives = 142/453 (31%), Gaps = 32/453 (7%) Query: 11 LVWLRNDLRITDNKALYAA---CHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67 L W+ D R TDN AL A D + VF P+ RQ F+ L Sbjct: 409 LYWMSRDQRPTDNWALLYARHLAQERDVPLRVVFCLVPKFLEAT---IRQFGFMLDGLQV 465 Query: 68 VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLE--- 124 V+ L +K I F + + L + +Q + V + E Sbjct: 466 VETHLRKKHIPFHLLTG----YAKDVLPKFAEEQEACAVVC--DMSPLRVPMAWVKETGS 519 Query: 125 KRLQHRVICKSFDDSVLLPPGSI-LNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIR 183 K V D ++P + + L L +++ Sbjct: 520 KLKDMNVPLYQVDAHNIVPVWHASPKQEYAARTIRNKIHQKLDTCLQPFPELESNSNSVQ 579 Query: 184 LTGPVTPSNIPRFFDYPFQAIDPMF-PIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGT 242 L V + + + + G + + +L +F E+++ Y + R+ P + Sbjct: 580 LPDTVDWKKARESLEINWDVKEVDWLKPGYEGGMKMLEEFINERLHRYADDRNDPNLDAL 639 Query: 243 SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKP-KSGAFSWLNELIWREFYRHLMAFYPSV 301 S LSPY G +S ++ L+ + + K+ + + + Y SV Sbjct: 640 SNLSPYYHFGQISVQRVVLELRSKQRGKYAEGVKAYIEEAVVRRELSDNFCFYNHRYDSV 699 Query: 302 CMGKPFIPWTEKIEWNKDSHLLQAWKQ---GYTGFPIIDAAMRQLNTIGWMHNRLRMITA 358 + T + L KQ T + +A+ QL G MH LRM A Sbjct: 700 EGASAWAQETLDVHSKDKREHLYTRKQLENAETADDLWNASQLQLVQEGKMHGFLRMYWA 759 Query: 359 SF---LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDS-------VPYFRI 408 + LDG + G W+ +D R Sbjct: 760 KKILEWTESPEKALEDAIYLNDKYELDGRDPNGYVGCMWSICGIHDQGWGERPVFGKIRY 819 Query: 409 FNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIH 441 N ++FD F++ + P N + IH Sbjct: 820 MNYKGCKRKFD-IAAFVKRYPPAAKNAAREAIH 851 >gi|13383259|dbj|BAB39480.1| CPD photolyase [Cucumis sativus] gi|20387244|dbj|BAB91322.1| CPD photolyase [Cucumis sativus] Length = 489 Score = 147 bits (370), Expect = 5e-33, Method: Composition-based stats. Identities = 84/466 (18%), Positives = 161/466 (34%), Gaps = 39/466 (8%) Query: 3 ATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIY 62 T ++ + W+ D R+ DN AL A ++ + V +A R G +RQ F+ Sbjct: 20 GTGSLGPVVYWMFRDQRVKDNWALIHAVDEANRANVPVAVAFNLFDRFLGAKSRQLGFML 79 Query: 63 ASLLQVQKSLSQ-KGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDK 121 L Q+Q + + I F Q ++ + + ++ + + L + + + Sbjct: 80 RGLQQLQHDIQETLQIPFFLFQG----EAEQTIPNFIRECGASLLVTDFSPLREVRKCKE 135 Query: 122 LLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPA 181 + KR++ V D ++P + + L+ + D S+ +P Sbjct: 136 EICKRVEESVKVHEVDAHNVVPTW-VASEKLEYSAKTLRGKINKKLPDYLIDYPSMVIPT 194 Query: 182 IRLTGPVTPSNIPRFFD----YPFQAIDPMF-PIGEQNALHIL----RKFCKEKVYYYVE 232 + + R D + + GE+ A+ +L F +++ Y Sbjct: 195 RKWPSADKFIDWDRLIDDNLRKGADVPELEWCKPGEKAAMEVLMGSKDGFLTKRLKGYAI 254 Query: 233 QRDIPAIQ-GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELI-WREF 290 R+ P G S LSPYL G +S ++C + + +L ELI RE Sbjct: 255 DRNNPLKPKGLSGLSPYLHFGQISAQRCALEAR----SIRKLNPQAVDVFLEELIVRREL 310 Query: 291 YRHLMAFYPSVCMGKPFIPWTEK--IEWNKDSHLLQAWKQ----GYTGFPIIDAAMRQLN 344 + + P W K ++ D ++ T P+ +AA ++ Sbjct: 311 ADNYCYYQPHYDSLLGAWEWARKTLMDHASDKREYIYTREQLEKAQTADPLWNAAQLEMA 370 Query: 345 TIGWMHNRLRMITASF---LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGND 401 G MH +RM A + I +DG + G W+ +D Sbjct: 371 HHGKMHGFMRMYWAKKILEWTRGPEEALEICIYLNDKYEIDGRDPNGYVGCMWSICGVHD 430 Query: 402 S-------VPYFRIFNPTIQGKRFDPQG--TFIRHWLPELNNVPTQ 438 R N ++FD G +++ + E+ + Sbjct: 431 QGWKERPVFGKIRYMNYAGCKRKFDVDGYIAYVKRLVGEIKKRKPE 476 >gi|260765941|gb|ACX50001.1| cryptochrome 1 [Capsella bursa-pastoris] Length = 143 Score = 147 bits (370), Expect = 5e-33, Method: Composition-based stats. Identities = 61/143 (42%), Positives = 87/143 (60%), Gaps = 6/143 (4%) Query: 333 FPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGW 392 +P++DA MR+L GW+H+R+R++ +SF VK L + WR G +YF LLD DL S+ GW Sbjct: 1 YPLVDAGMRELWATGWLHDRIRVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGW 60 Query: 393 QWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKN-- 450 Q+ T DS + RI NP +G +FDP G ++R WLPEL+ +PT +IH P + + Sbjct: 61 QYITGTLPDSREFDRIDNPQFEGYKFDPNGEYVRRWLPELSRLPTDWIHHPWNAPESVLQ 120 Query: 451 ----DLSLNYPLPIVDHKKACHH 469 +L NYP PIV +A Sbjct: 121 AAGIELGSNYPRPIVGLDEAKAR 143 >gi|225848662|ref|YP_002728825.1| deoxyribodipyrimidine photo-lyase [Sulfurihydrogenibium azorense Az-Fu1] gi|225644140|gb|ACN99190.1| deoxyribodipyrimidine photo-lyase [Sulfurihydrogenibium azorense Az-Fu1] Length = 452 Score = 147 bits (370), Expect = 5e-33, Method: Composition-based stats. Identities = 91/430 (21%), Positives = 170/430 (39%), Gaps = 41/430 (9%) Query: 14 LRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQKSLS 73 LR D + A+ A + +++ FI + + R F+ +L+ +K++ Sbjct: 29 LREDFNFSLEFAIQKANKLNKPLLVSFFITD----KYKHSNQRYYKFMIEGILKTKKAIE 84 Query: 74 QKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHRVIC 133 ++GI F + + +++ + ++ Y + + + + K +V Sbjct: 85 ERGIKFVIQKDDYVNGTLKLSKE------AVCIVLDKNYLKTQRKWRENIAKA--SQVAV 136 Query: 134 KSFDDSVLLPPGSILNHAL--------QMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185 ++ V++P + + + ++ KV F K + + ++ + + L V ++ Sbjct: 137 YQLENDVVVPIQVVSDKPIPYAYLYRDRLNKVIDRFLKPVEKIDLKVNSKDLDVESLEFK 196 Query: 186 GPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245 P +I D +D F G A L++F ++K+Y Y E R P+ TS L Sbjct: 197 TPDEFLSILNI-DKTVSTVDKYFVGGYDEAEKRLKEFIEKKLYKYKEFRSDPSKDYTSNL 255 Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELI-WREFYRHLMAFYPSVCMG 304 SPYL G +SP + + + + K S+ NELI WRE R+ + P Sbjct: 256 SPYLHFGQISPLKIVLEVLKHY----DKNDENVVSFFNELIVWRELSRNFCWYNPLYNQY 311 Query: 305 KPFIPWTEKI--EWNKDS----HLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITA 358 + W + E KD + LQ +++ T P +AA ++L G +HN +RM A Sbjct: 312 EGIPQWARQTLEEHKKDKRDYVYSLQEFEEAKTHDPYWNAAQKELLKTGKIHNYMRMYWA 371 Query: 359 SF---LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVP------YFRIF 409 +D + I LDG + GG W T + R Sbjct: 372 KKIIEWTEDPKQAFDIACYLNDKYALDGRDPNGYGGISWCFGTFDRPWQERKVFGKIRYM 431 Query: 410 NPTIQGKRFD 419 N ++FD Sbjct: 432 NDKGLERKFD 441 >gi|198458346|ref|XP_001361001.2| GA10839 [Drosophila pseudoobscura pseudoobscura] gi|198136308|gb|EAL25577.3| GA10839 [Drosophila pseudoobscura pseudoobscura] Length = 540 Score = 146 bits (369), Expect = 7e-33, Method: Composition-based stats. Identities = 72/440 (16%), Positives = 143/440 (32%), Gaps = 32/440 (7%) Query: 11 LVWLRNDLRITDNKALYAACHNS---DAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67 + W+ D R+ DN AL A + + + VF P+ R F+ L + Sbjct: 102 VYWMSRDGRVQDNWALLFAQRLALKLEMPLAVVFCLVPKFLNAT---IRHYKFMMGGLQE 158 Query: 68 VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRR--DKLLEK 125 V++ + GI F +++ L + + V + + V R + + K Sbjct: 159 VEEQCRELGIPFHLLLGP----AVDRLPEFVRSKDVGAVVC--DFAPLRVPRKWVEDVAK 212 Query: 126 RLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVP---AI 182 L V D ++P + + + + + + P Sbjct: 213 ALPKNVPLTQVDAHNVVPLWVASDKQEYAARTIRNKINSKLGEFLSDFPPVIKHPYGEGC 272 Query: 183 RLTGPVTPSNIPRFFDYPFQAIDPMF-PIGEQNALHILRKFCKEKVYYYVEQRDIPAIQG 241 + P+ + + + G + A L +FC ++ + ++R+ P + Sbjct: 273 KKVKPIDWPAAYAMLECDMDVDEVKWAKPGYKAACLQLYEFCSRRLGKFNDKRNDPTVDA 332 Query: 242 TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSV 301 S LSP+L G +S ++C ++ + + + + + Y S+ Sbjct: 333 LSGLSPWLHFGQISAQRCVLEVQRYRSQHKASADAYCEEAIVRRELADNFCYYNENYDSL 392 Query: 302 CMGKP--FIPWTEKIEWNKDS-HLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITA 358 P + + +D + L+ +Q T + ++A QL G MH LRM A Sbjct: 393 KGLSPWAYQSLEAHRKDKRDPCYTLEELEQSLTYDDLWNSAQLQLVREGKMHGFLRMYWA 452 Query: 359 SF---LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDS-------VPYFRI 408 LDG + G W+ +D R Sbjct: 453 KKILEWTATPEQALEYAILLNDKYSLDGRDPNGYVGCMWSIGGIHDMGWKERAIFGKIRY 512 Query: 409 FNPTIQGKRFDPQGTFIRHW 428 N ++FD F+ + Sbjct: 513 MNYQGCKRKFDVNA-FVMRY 531 >gi|224060613|ref|XP_002190613.1| PREDICTED: similar to CPD photolyase-like [Taeniopygia guttata] Length = 697 Score = 146 bits (368), Expect = 8e-33, Method: Composition-based stats. Identities = 76/437 (17%), Positives = 146/437 (33%), Gaps = 41/437 (9%) Query: 20 ITDNKALYAACHNS---DAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQKSLSQKG 76 + DN A A + + + F P+ R F+ L +V + ++ Sbjct: 272 VADNWAFLYAQRLALKQELPLHVCFCLVPKFLGAT---IRHYRFMLRGLQEVAEECAELN 328 Query: 77 IVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKL--LEKRLQHRVICK 134 I F + + L ++ ++ V L + + R + +++RL V Sbjct: 329 IPFHLL----LGYAKDVLPTFVVEHGVGGLVT--DFSPLRLPRQWVEDVKERLPEDVPFA 382 Query: 135 SFDDSVLLPPG--------SILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 D ++P S +++ F + L S P I Sbjct: 383 QVDAHNIVPCWVASPKQEYSARTIRGKIHAQLPEFLTEFPPVVPHPHLPSCPAEPIAWEA 442 Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246 + + D+ + ++ G + +L+ F E++ + R+ P S LS Sbjct: 443 CYSSLQV----DHTVKEVE-WATPGTAAGMAVLKSFIAERLKSFSTHRNDPNKAALSNLS 497 Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP 306 P+L G +S ++ ++++ + + + E + + Y SV Sbjct: 498 PWLHFGQVSTQRAILEVQKQRRNYKDSVDAFVEEAVVRRELAENFCYYNENYDSVQGAYD 557 Query: 307 FIPWTEKIEWNKDSHLLQAWKQ---GYTGFPIIDAAMRQLNTIGWMHNRLRMITASF--- 360 + T K+ L + ++ G T P+ +AA Q+ G MH LRM A Sbjct: 558 WAQTTLKLHAKDKRPYLYSLQELEQGTTHDPLWNAAQLQMVQEGKMHGFLRMYWAKKILE 617 Query: 361 LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDS----VPYF---RIFNPTI 413 + + LDG + G W+ +D P F R N Sbjct: 618 WTRSPEEALQFAIYLNDRYELDGRDPNGYVGCLWSICGIHDQGWAERPIFGKIRYMNYAG 677 Query: 414 QGKRFDPQGTFIRHWLP 430 ++FD F R + P Sbjct: 678 CKRKFDVD-QFERRYTP 693 >gi|167629931|ref|YP_001680430.1| deoxyribodipyrimidine photolyase [Heliobacterium modesticaldum Ice1] gi|167592671|gb|ABZ84419.1| deoxyribodipyrimidine photolyase [Heliobacterium modesticaldum Ice1] Length = 498 Score = 146 bits (368), Expect = 8e-33, Method: Composition-based stats. Identities = 85/472 (18%), Positives = 152/472 (32%), Gaps = 66/472 (13%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 L W++ R N AL A ++ + V + G +AR F+ L V++ Sbjct: 22 LYWMQASQRAEYNHALEYAIGEANKLGLPVLVFFGLTGGVPGANARHYRFLLEGLCDVRE 81 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130 +L ++GI + + + +R + +R Y +R + + R Sbjct: 82 ALQRRGIAMIIRRIPPVEGVVAL------ARRAALVVTDRGY----LRYQRQWREAAAAR 131 Query: 131 VICK--SFDDSVLLPPGSILNHALQMYKVYTP--------FRKALIQNLVQADLR----- 175 + C + V++P + + P F L + Sbjct: 132 IDCPFIQVESDVIVPVETASPKEEYGAATFRPKIKRLLDTFLVPLEERDTDCPAPDVEAL 191 Query: 176 ---SLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPM-FPIGEQNALHILRKFCKEKVYYYV 231 +LP + S+I + G + A L F +K++ Y Sbjct: 192 LDEALPGEPVFADSATPLSSIVTALSVDASISPARGWRGGSKEAHRRLDDFLGKKLFRYH 251 Query: 232 EQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFV--------------------DLL 271 E + P++ G S+LSP+L G +SP + + ++ + Sbjct: 252 EDKKDPSLDGLSELSPFLHFGQISPLEVALKARQAVATDLSLDGTGLSLDGTGPSPVGVG 311 Query: 272 IKPKSGAFSWLNELI-WREFYRHLMAFYPSVCMGKPFIPWTEKIEWNK--DSHLLQAWK- 327 P G ++L ELI RE + + P+ W + + DS K Sbjct: 312 PSPNPGLAAFLEELIVRRELAMNFAYYNPAYDQFAALPAWAQATLHSHRLDSREFNYTKA 371 Query: 328 ---QGYTGFPIIDAAMRQLNTIGWMHNRLRMITASF---LVKDLLVDWRIGEEYFMSQLL 381 T +AA +L G MH +RM D +RI E + L Sbjct: 372 ELENACTHDRYWNAAQTELVLRGKMHGYMRMYWGKKILEWTADPERAYRIAVELNDTYAL 431 Query: 382 DGDLASNNGGWQWAASTGNDSV------PYFRIFNPTIQGKRFDPQGTFIRH 427 DG + G W + R N ++FD + ++R Sbjct: 432 DGRDPNGYTGIAWCFGKHDRPWGERAIFGKVRYMNAAGLRRKFDIEA-YVRK 482 >gi|71416884|ref|XP_810407.1| DNA photolyase [Trypanosoma cruzi strain CL Brener] gi|70874932|gb|EAN88556.1| DNA photolyase, putative [Trypanosoma cruzi] Length = 341 Score = 146 bits (368), Expect = 9e-33, Method: Composition-based stats. Identities = 67/231 (29%), Positives = 100/231 (43%), Gaps = 14/231 (6%) Query: 242 TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKP--KSGAFSWLNELIWREFYRHLMAFYP 299 S++SPYLS G LSPR+ + L+ + L + L L R+ Y H M Sbjct: 8 LSRVSPYLSNGSLSPRRFYEMLRRYATENLRDNFVQMQYREALLRLSRRD-YWHWMGLRY 66 Query: 300 SVCMGKPFIPWTEKIE----WNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRM 355 + P+ P E+ + W D ++Q W G TG P DAAMR+L T G++ + R Sbjct: 67 GTLLFFPYGPRPEQTDNIPDWRHDEKIVQKWCAGLTGVPFADAAMRELLTTGFVAHEGRQ 126 Query: 356 ITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQG 415 A L + DWR+G E+ LD D G + + + D + + Sbjct: 127 ALAWLLTRGYGQDWRLGAEWLERCSLDYDPFLCYGNFAYFSELILDDFGEP-VRSVHWLA 185 Query: 416 KRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND------LSLNYPLPI 460 D G +++ WLP L+ +P YIH PH + L YP P+ Sbjct: 186 HHHDQTGIYVKKWLPLLSKIPPVYIHRPHVLTPRMQAMHGVRLGKTYPYPL 236 >gi|74136505|ref|NP_001028149.1| DNA photolyase [Monodelphis domestica] gi|682750|dbj|BAA06700.1| photolyase [Monodelphis domestica] Length = 470 Score = 145 bits (367), Expect = 1e-32, Method: Composition-based stats. Identities = 68/436 (15%), Positives = 139/436 (31%), Gaps = 21/436 (4%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 + W+ D R+ DN A A + + + + + G + R F+ L +V + Sbjct: 38 VYWMSRDQRVQDNWAFLYAQRLALKQKLPLHVCFCLAPCFLGATIRHYDFMLRGLEEVAE 97 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130 + I F D L ++ + + + ++ + K ++ L + Sbjct: 98 ECEKLHIPFHLLLGLPKD----VLPAFVQAHSIGGIVTDFSPLLHHTQWVKDVQDGLPKQ 153 Query: 131 VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQ--ADLRSLPVPAIRLTGPV 188 V D ++P + + + + + + P P+ PV Sbjct: 154 VPFVQVDAHNIVPCWIASDKQEYGARTIRHKIHDRLPHFLTEFPPVICHPYPSNIQAEPV 213 Query: 189 TPSNIPRFFDYPFQAIDPMF-PIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSP 247 + + + G + L +L+ F +++ Y+ R+ P S LSP Sbjct: 214 DWNACRAGLQVDRSVKEVSWAKPGTASGLTMLQSFISQRLPYFGSDRNNPNKDALSNLSP 273 Query: 248 YLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPF 307 + G +S ++ +++ + + + + Y + + Sbjct: 274 WFHFGQVSVQRAILEVQKHRSRYPDSVANFVEEAVVRRELADNFCFYNKNYDKLEGAYDW 333 Query: 308 IPWTEKIEWNKDSHLLQAWKQ---GYTGFPIIDAAMRQLNTIGWMHNRLRMITASF---L 361 T ++ L + +Q G T P+ +AA Q+ G MH LRM A Sbjct: 334 AQTTLRLHAKDKRPHLYSLEQLESGKTHDPLWNAAQMQMVQEGKMHGFLRMYWAKKILEW 393 Query: 362 VKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDS-------VPYFRIFNPTIQ 414 + LDG + G W+ +D R N Sbjct: 394 TRSPEEALEFAIYLNDRFQLDGRDPNGYVGCMWSICGIHDQGWAEREIFGKIRYMNYAGC 453 Query: 415 GKRFDPQGTFIRHWLP 430 ++FD F R + P Sbjct: 454 KRKFDV-AEFERKYSP 468 >gi|327284572|ref|XP_003227011.1| PREDICTED: deoxyribodipyrimidine photo-lyase-like [Anolis carolinensis] Length = 535 Score = 145 bits (367), Expect = 1e-32, Method: Composition-based stats. Identities = 77/445 (17%), Positives = 150/445 (33%), Gaps = 39/445 (8%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAV---FIATPEQWRQHGISARQSHFIYASLLQ 67 L W+ D R+ DN A A + + + + F P+ RQ F+ L + Sbjct: 100 LYWMSRDQRVQDNWAFLYAQRLALKQNLPLHVAFCLVPKFLEAT---IRQFGFMLKGLKE 156 Query: 68 VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEV--RRDKLLEK 125 V + + I F + + L + + + + + V + + +++ Sbjct: 157 VAEECQELSIPFHLL----IGFAKDTLPPFVAKHNIAGVVT--DFAPLRVPMQWVQEVQE 210 Query: 126 RLQHRVICKSFDDSVLLPPG-SILNHALQMYKVYTPFRKALIQNLVQADLR-SLPVPAIR 183 RL V D ++P + + L + L P A Sbjct: 211 RLPPDVPFVQVDAHNVVPCWVASEKQEYGARTIRRKIHDRLCEFLTGFPPVIQHPHQAAS 270 Query: 184 LTGPVTPSNIPRFFDYPFQAIDPMF-PIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGT 242 P+ + + + G L +L +F +E++ ++ R+ P Sbjct: 271 QAEPIDWDACSASLEVDRSVPEVEWAKPGSAAGLLVLGEFVQERLKFFSSDRNNPNRAAL 330 Query: 243 SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNE-LIWREFYRHLMAFYPSV 301 S LSP+ G +S ++ +++ + + +++ E LI RE + + P+ Sbjct: 331 SNLSPWFHFGQVSVQRAILEVRKH----RTRCRESVEAFIEEALIRRELADNFCFYNPNY 386 Query: 302 CMGKPFIPWTE------KIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRM 355 + W + + + L+ ++G T + +AA Q+ G MH LRM Sbjct: 387 DKVEGAYEWAKTTLKLHATDKRPHLYTLKQLEEGKTHDQLWNAAQLQMVHEGKMHGFLRM 446 Query: 356 ITASFLVKDLLVDWR---IGEEYFMSQLLDGDLASNNGGWQWAASTGNDS-------VPY 405 A +++ LDG + G W+ +D Sbjct: 447 YWAKKILEWTNSPEEALKFSIYLNDRYELDGRDPNGYVGCMWSVCGIHDQGWAERAVFGK 506 Query: 406 FRIFNPTIQGKRFDPQGTFIRHWLP 430 R N K+FD G F R + P Sbjct: 507 IRYMNYAGCTKKFDV-GQFERKYNP 530 >gi|195154062|ref|XP_002017941.1| GL17032 [Drosophila persimilis] gi|194113737|gb|EDW35780.1| GL17032 [Drosophila persimilis] Length = 540 Score = 145 bits (367), Expect = 1e-32, Method: Composition-based stats. Identities = 72/440 (16%), Positives = 142/440 (32%), Gaps = 32/440 (7%) Query: 11 LVWLRNDLRITDNKALYAACHNS---DAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67 + W+ D R+ DN AL A + + + VF P+ R F+ L + Sbjct: 102 VYWMSRDGRVQDNWALLFAQRLALKLEMPLAVVFCLVPKFLNAT---IRHYKFMMGGLQE 158 Query: 68 VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRR--DKLLEK 125 V++ GI F +++ L + + V + + V R + + K Sbjct: 159 VEEQCRDLGIPFHLLLGP----AVDRLPEFVRSKDVGAVVC--DFAPLRVPRKWVEDVAK 212 Query: 126 RLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVP---AI 182 L V D ++P + + + + + + P Sbjct: 213 ALPKNVPLTQVDAHNVVPLWVASDKQEYAARTIRNKINSKLGEFLSDFPPVIKHPYGEGC 272 Query: 183 RLTGPVTPSNIPRFFDYPFQAIDPMF-PIGEQNALHILRKFCKEKVYYYVEQRDIPAIQG 241 + P+ + + + G + A L +FC ++ + ++R+ P + Sbjct: 273 KKVKPIDWPAAYAMLECDMDVDEVKWAKPGYKAACLQLYEFCSRRLGKFNDKRNDPTVDA 332 Query: 242 TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSV 301 S LSP+L G +S ++C ++ + + + + + Y S+ Sbjct: 333 LSGLSPWLHFGQISAQRCVLEVQRYRSQHKASADAYCEEAIVRRELADNFCYYNENYDSL 392 Query: 302 CMGKP--FIPWTEKIEWNKDS-HLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITA 358 P + + +D + L+ +Q T + ++A QL G MH LRM A Sbjct: 393 KGLSPWAYQSLEAHRKDKRDPCYTLEELEQSLTYDDLWNSAQLQLVREGKMHGFLRMYWA 452 Query: 359 SF---LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDS-------VPYFRI 408 LDG + G W+ +D R Sbjct: 453 KKILEWTATPEQALEYAILLNDKYSLDGRDPNGYVGCMWSIGGIHDMGWKERAIFGKIRY 512 Query: 409 FNPTIQGKRFDPQGTFIRHW 428 N ++FD F+ + Sbjct: 513 MNYQGCKRKFDVNA-FVMRY 531 >gi|255070203|ref|XP_002507183.1| predicted protein [Micromonas sp. RCC299] gi|226522458|gb|ACO68441.1| predicted protein [Micromonas sp. RCC299] Length = 579 Score = 145 bits (366), Expect = 1e-32, Method: Composition-based stats. Identities = 85/456 (18%), Positives = 145/456 (31%), Gaps = 34/456 (7%) Query: 2 KATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFI 61 + + W D R+ DN AL AC ++ V + R G ARQ F+ Sbjct: 15 EGKVGTGPVIYWCSRDQRVRDNWALIYACETANETGAPVVVVFSLVTRFLGAGARQFCFM 74 Query: 62 YASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDK 121 L +++++L K I F + + + + + + + R Sbjct: 75 LKGLREMEQALLAKNIKFVLLEGDPSLT----VPRFAKECGASLIVA--DQSPLRLGRTW 128 Query: 122 LLEKRLQHRVICKSFDDSVLLPPGS--------ILNHALQMYKVYTPFRKALIQNLVQAD 173 + D ++P ++ K+Y F + V + Sbjct: 129 RVAIASSVDCPLHEVDAHNVVPVWEASQKLEVGARTLRGKLAKLYPEFLVEFPETPVVKE 188 Query: 174 -LRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFP-IGEQNALHILRKFCKEKVYYYV 231 A+ G + I R + + + GE A L F ++ YY Sbjct: 189 TWPCAAAAALPTIGIDWEALIVRARNDGAAVPEVTWAVPGEFAAHATLEHFLTRRLKYY- 247 Query: 232 EQRDIPAIQ-GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREF 290 E R+ PA S LSPYL G +S ++C + + + Sbjct: 248 EHRNDPAKPQALSGLSPYLHFGQISAQRCALEARRYAKSSNKAVDVFLEELIVRRELADN 307 Query: 291 YRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHL----LQAWKQGYTGFPIIDAAMRQLNTI 346 + Y ++ K E +KD LQ ++ G T + +AA ++ Sbjct: 308 FCWYSPKYDTIEGQKYEWAKETVREHSKDKRAYLYSLQQFENGETHDDLWNAAQLEMVHG 367 Query: 347 GWMHNRLRMITASF---LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDS- 402 G MH +RM A + LDG S G W+ +D Sbjct: 368 GKMHGFMRMYWAKKIMEWTESPDQALEFAIHLNDKYQLDGRDPSGYVGCMWSIVGVHDQG 427 Query: 403 ---VPYF---RIFNPTIQGKRFDPQGTFIRHWLPEL 432 P F R + K+F Q +I+ + EL Sbjct: 428 WSERPIFGKIRYMAYSGCVKKFKVQ-DYIKR-VDEL 461 >gi|299135755|ref|ZP_07028939.1| DNA photolyase FAD-binding [Acidobacterium sp. MP5ACTX8] gi|298601879|gb|EFI58033.1| DNA photolyase FAD-binding [Acidobacterium sp. MP5ACTX8] Length = 487 Score = 145 bits (366), Expect = 1e-32, Method: Composition-based stats. Identities = 80/441 (18%), Positives = 138/441 (31%), Gaps = 30/441 (6%) Query: 3 ATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIY 62 A + W++ R DN AL A ++ + + R F+ Sbjct: 44 APAKGKCVVYWMQRAQRGRDNHALDKAIEVANVLGLPCVAYFAGIKNFPHANLRHYAFLN 103 Query: 63 ASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKL 122 L +++ + +G+ F + D + + + + R Sbjct: 104 QGLPDIEEDCAARGVGFVMRRAPEEDH-----ERFFADVDAAMVIGDENPMREPERWRAK 158 Query: 123 LEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAI 182 L K L RV + D V++ P +L A V P + + + Sbjct: 159 LAKSL--RVPFWTVDADVIV-PSKLLEKAQFSAGVARPRLYRALPEFLHDYENPAALKVW 215 Query: 183 RLTGPVTPSNIPRFFDYPFQAID------PMFPIGEQNALHILRKFCKEKVYYYVEQRDI 236 R + +I ++ D + G A+ L FC + + Y R+ Sbjct: 216 RKPRGLHTDDIREDMTRGWKDFDRSVLPVAAWQGGHHAAMKRLHLFCGQMLETYDRDRNH 275 Query: 237 PAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMA 296 P + G+S+LSPYL G L P L + + + ++WRE + + Sbjct: 276 PELDGSSKLSPYLHFGHLGPLTIALALNAQVKRQPKLAAARDSYFNELIVWRELAVNFVR 335 Query: 297 FYPSVCMGKPFIPWTEKIEWNKDSHL------LQAWKQGYTGFPIIDAAMRQLNTIGWMH 350 + P W D L + T + +AA Q+ GWMH Sbjct: 336 YQPEYDSPGCADNWARATIAEHDRDEREVLYTLAQLEGARTHDELWNAAQLQMVRYGWMH 395 Query: 351 NRLRMITASF---LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSV---- 403 N LRM A ++ + LDG + G WA D Sbjct: 396 NYLRMYWAKKIVEWTRNTATAMKWAIYLNDRYFLDGRDPNGYAGVAWAVLGKFDRAWGER 455 Query: 404 ---PYFRIFNPTIQGKRFDPQ 421 R + G++FD + Sbjct: 456 PVFGKRRYMSGASTGRKFDAE 476 >gi|254480196|ref|ZP_05093444.1| FAD binding domain of DNA photolyase, putative [marine gamma proteobacterium HTCC2148] gi|214039758|gb|EEB80417.1| FAD binding domain of DNA photolyase, putative [marine gamma proteobacterium HTCC2148] Length = 227 Score = 145 bits (366), Expect = 1e-32, Method: Composition-based stats. Identities = 71/221 (32%), Positives = 101/221 (45%), Gaps = 5/221 (2%) Query: 230 YVEQRD-IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWR 288 Y E R+ + + +S LSP+L+ G L+ + L + + L + +EL+WR Sbjct: 10 YKETRNQLDGLFYSSFLSPWLANGSLAVSKLAWELDQ--FEKLHGANDSTRHFYSELLWR 67 Query: 289 EFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGW 348 EF+ S K+ D W G T +P+++A M QL GW Sbjct: 68 EFFYRREVEDSSSLFRAKGTARERKL-VTFDPRGFARWCAGATDYPLVNALMHQLVESGW 126 Query: 349 MHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRI 408 M NR R I AS LV ++ VDWR G +F LLD D ASN G WQ+ A G D R Sbjct: 127 MSNRGRQIAASCLVNEMNVDWRFGAAFFEQHLLDYDAASNYGNWQYIAGVGADPRG-GRH 185 Query: 409 FNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDK 449 F+ Q ++FDP+G F + W P + A L+ Sbjct: 186 FDLVKQTRQFDPEGEFTQRWEGYCPKQPEHIVDAADWPLES 226 >gi|193652710|ref|XP_001949151.1| PREDICTED: deoxyribodipyrimidine photo-lyase-like [Acyrthosiphon pisum] Length = 506 Score = 145 bits (366), Expect = 1e-32, Method: Composition-based stats. Identities = 75/435 (17%), Positives = 140/435 (32%), Gaps = 23/435 (5%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 + W D RI DN AL A + +++ I + S R I+ L +++ Sbjct: 68 IYWTFRDERIHDNWALLYAQKLAIKNKVSLHITFCRLKQFLDCSLRHYKHIFQGLEELET 127 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130 I F + + + L + + ++ + + + K L R+ Sbjct: 128 ECKSLDIQFHFL----IGCAADILPDFVKKHKLGAIIVDFMPVREHISWTKQLADRIGSE 183 Query: 131 VICKSFDDSVLLPPGSILNHA-LQMYKVYTPFRKALIQNLVQADLR-SLPVPAIRLTGPV 188 V D ++P + + L + L + P + P Sbjct: 184 VPVIQVDAHNIVPCWVASDKQEYSARTIRNKINNKLPEFLTEFPPVIKHPFRSTFKAKPT 243 Query: 189 TPSNIPRFFDYPFQAID-PMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSP 247 + + + P G + + L +F K+++ Y R+ P G S+LSP Sbjct: 244 NWDEADKTLEVDRSVVSVPGLKAGFKAGMSELEQFLKKRLPKYSTDRNNPVKDGLSKLSP 303 Query: 248 YLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPF 307 +L G +S ++C + + + + + + Y G P Sbjct: 304 WLHFGQISAQRCILEVSKLSKQYPDSVAAYREEAIVRRELSDNFCFYNPKY-DKIEGAPN 362 Query: 308 IPWTEKIEWNKDSHLLQAWKQ----GYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363 T E KD + ++ T + ++A QL G MH LRM A +++ Sbjct: 363 WAQTSLNEHRKDKRMFVYTREELESSRTHDDLWNSAQIQLVKEGKMHGFLRMYWAKKILE 422 Query: 364 DLLVDWRIGEE---YFMSQLLDGDLASNNGGWQWAASTGNDS-------VPYFRIFNPTI 413 R + +DG S G W+ +D R N Sbjct: 423 WTDTPDRALADAIYLNDKYSMDGRDPSGFVGCMWSICGIHDQGWKEREIFGKIRYMNYAG 482 Query: 414 QGKRFDPQGTFIRHW 428 ++FD FI + Sbjct: 483 CKRKFDINA-FIARY 496 >gi|254461876|ref|ZP_05075292.1| deoxyribodipyrimidine photo-lyase, putative [Rhodobacterales bacterium HTCC2083] gi|206678465|gb|EDZ42952.1| deoxyribodipyrimidine photo-lyase, putative [Rhodobacteraceae bacterium HTCC2083] Length = 408 Score = 145 bits (365), Expect = 2e-32, Method: Composition-based stats. Identities = 67/270 (24%), Positives = 101/270 (37%), Gaps = 17/270 (6%) Query: 196 FFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIP----AIQGTSQLSPYLSI 251 F D P D +F L L F +Y QR+ S LSP++ Sbjct: 12 FDDLPRLNKDVVFTPTRAAGLAQLETFVSRMGDHYTAQRNYDLGAQDRSTASALSPWIRH 71 Query: 252 GVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWT 311 +++ + R S A ++ E+ WR +++ + +PSV Sbjct: 72 RLITEEEVLTRALARH------SPSAASKFVQEVFWRGYFKGWLEQHPSVWKAFRHDLRL 125 Query: 312 EKIEWNKDS---HLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVD 368 D H +G +G D + +L G++HN RM AS + L + Sbjct: 126 AYARLENDEVLKHDYTDATEGRSGIACFDHWVNELVQTGYLHNHARMWFASIWIFSLRLP 185 Query: 369 WRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYF-RIFNPTIQ-GKRFDPQGTFI- 425 W++G ++FM LLDGD ASN W+W Y R N G RF+P+G Sbjct: 186 WQLGADFFMQHLLDGDPASNTLSWRWVGGLHTKGKTYLARASNIAKYTGGRFNPEGQLAG 245 Query: 426 -RHWLPELNNVPTQYIHAPHSWLDKNDLSL 454 L EL P + P + L L Sbjct: 246 LAIALEELEEHPFVPLPLPSTAPQSKTLRL 275 >gi|313228122|emb|CBY23272.1| unnamed protein product [Oikopleura dioica] Length = 168 Score = 144 bits (364), Expect = 2e-32, Method: Composition-based stats. Identities = 64/167 (38%), Positives = 93/167 (55%), Gaps = 8/167 (4%) Query: 314 IEWNKDS-HLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIG 372 I W+K+ L A++ TGFP +DA + +L T G + + R+ A+FL K L VDWR G Sbjct: 4 IWWSKNQKELFAAFEDARTGFPFVDAMVTELKTRGDVRHWARLCLANFLTKVLHVDWRHG 63 Query: 373 EEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPEL 432 E++F L+D D NNG WQ+ TG I+NP Q K+FD G +I+ WLP L Sbjct: 64 EKFFARHLVDYDPIVNNGNWQYCGGTGTGIAHRPDIYNPWNQSKKFDKNGEYIQKWLPFL 123 Query: 433 NNVPTQYIHAPHSWLDKNDL----SLNYPLPIVDHKKACHHTLNQYY 475 V ++HA W DK+ L L+Y P+V++ KA ++L + Sbjct: 124 AKVGPAHLHA---WEDKHKLYNLSKLDYVKPVVEYAKAREYSLKMFK 167 >gi|75907163|ref|YP_321459.1| deoxyribodipyrimidine photo-lyase family protein [Anabaena variabilis ATCC 29413] gi|75700888|gb|ABA20564.1| deoxyribodipyrimidine photo-lyase family protein (cryptochrome) [Anabaena variabilis ATCC 29413] Length = 278 Score = 144 bits (364), Expect = 2e-32, Method: Composition-based stats. Identities = 63/208 (30%), Positives = 96/208 (46%), Gaps = 9/208 (4%) Query: 209 PIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFV 268 G Q A L+ K Y + R+ ++LSPY+ GVLS R+ + + + Sbjct: 33 KGGRQAAQKALQ---KVNPATYAKTRNFLTGD-VTRLSPYIRYGVLSLREIRDYVLDN-- 86 Query: 269 DLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQ 328 +K A +NEL WR++++ L + T S L K+ Sbjct: 87 ---VKHSDDATKLINELGWRDYWQRLYVKLGNGIWEDQEEYKTGYTPAEYASDLATDIKE 143 Query: 329 GYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASN 388 G TG ID+ R+L G++HN +RM A+++V + W+ G ++F+ LLDGD ASN Sbjct: 144 GKTGLVCIDSFSRELRETGYLHNHMRMWLAAYIVHWRRIRWQEGAKWFLEHLLDGDPASN 203 Query: 389 NGGWQWAASTGNDSVPYFRIFNPTIQGK 416 N WQW AST + +F N K Sbjct: 204 NMSWQWVASTFSQKPYFFNRENLERYTK 231 >gi|80971696|gb|ABB52818.1| cryptochrome 2 [Sesamia nonagrioides] Length = 264 Score = 144 bits (363), Expect = 3e-32, Method: Composition-based stats. Identities = 61/199 (30%), Positives = 89/199 (44%), Gaps = 12/199 (6%) Query: 208 FPIGEQNALHILRKFCKEKVY-----YYVEQRDIPAIQG-TSQLSPYLSIGVLSPRQCWN 261 + GE AL +++ K Y+ P + G LSP L G LS R Sbjct: 67 WVGGETTALKQMQQRLAVKYETFLRGSYLPTHGNPDLLGRPISLSPALRFGCLSVRSFCW 126 Query: 262 RLKEEFVDL---LIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNK 318 +++ F ++ + +S + +LIWRE++ + P+ P I W Sbjct: 127 SVQDLFREVHQGRLATQSASHFITGQLIWREYFYTMSVNNPNYG-QMSGNPICLDIPWKN 185 Query: 319 DS-HLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD-LLVDWRIGEEYF 376 LQ W +G TGFP +DAAMRQL T GW+H+ R A FL + L + W G +F Sbjct: 186 PEGDELQRWVEGRTGFPFVDAAMRQLRTEGWLHHVARNTVAFFLTRGTLWLSWEHGLNHF 245 Query: 377 MSQLLDGDLASNNGGWQWA 395 + LLD D + G W W Sbjct: 246 LKYLLDADWSVCAGNWMWV 264 >gi|145219390|ref|YP_001130099.1| deoxyribodipyrimidine photo-lyase type II [Prosthecochloris vibrioformis DSM 265] gi|145205554|gb|ABP36597.1| Deoxyribodipyrimidine photo-lyase type II [Chlorobium phaeovibrioides DSM 265] Length = 452 Score = 144 bits (362), Expect = 4e-32, Method: Composition-based stats. Identities = 89/449 (19%), Positives = 155/449 (34%), Gaps = 35/449 (7%) Query: 2 KATTAMSVHLVWLRNDLRITDNKALYAA---CHNSDAKVIAVFIATPEQWRQHGISARQS 58 +A + W+ D R+ N+AL + + VF RQ Sbjct: 12 EAEEKRGPVIYWMSRDQRVQHNRALLFSQMKAKALGQPLRVVFTLASSFIGATY---RQY 68 Query: 59 HFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSI-EWLDSYCLQQRVTKLFYNRQYEINEV 117 HF+ L +++ L + I F QCS + L+ Y + Y + Sbjct: 69 HFMLEGLREIELLLGELNIGFVLLQCSPQSGGPGKELEGYAGSSGAGCVVT--DYSPLRI 126 Query: 118 RRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQ--ADLR 175 R + +V D ++P + + + P L+ +Q + Sbjct: 127 SRQWKQQAAASLKVPLYEVDAHNIVPCHAASGKQEYAARTFRPKINRLLGEFLQPLQAVE 186 Query: 176 SLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRD 235 ++P A D + ID GE+ A LR+F EK+ Y E R+ Sbjct: 187 AMPHRAELQKVNWREVFANLSVDRTVEPID-WLKPGERAASEHLRRFISEKLPRYSELRN 245 Query: 236 IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELI-WREFYRHL 294 P +GTS LS YL G LS Q ++ P+ ++L ELI RE + Sbjct: 246 DPTAEGTSLLSAYLHFGQLSAAQVALEVQ-----SSGAPEESKAAFLEELIVRRELSDNY 300 Query: 295 MAFYPSVCMGKPFIPWTEK------IEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGW 348 A + W + ++ + + Q ++ T + +AA ++L G Sbjct: 301 CAHQEQYDAYEGLPGWARQSLEQHSLDPRETLYSPQEFETAATHDRLWNAAQKELLHTGR 360 Query: 349 MHNRLRMITASFLVKDLLVDWRIGEEYFM---SQLLDGDLASNNGGWQWAASTGNDS--- 402 +H +RM A +++ E LDG + G W+ +D Sbjct: 361 IHGYMRMYWAKKILEWSPSPREAFETALWLNDRYALDGRDPNGYSGVAWSIGGLHDRPWF 420 Query: 403 ----VPYFRIFNPTIQGKRFDPQGTFIRH 427 R N + ++F+ +G +I Sbjct: 421 ERPVYGKIRYMNASGCRRKFNVEG-YIAK 448 >gi|218780190|ref|YP_002431508.1| deoxyribodipyrimidine photo-lyase [Desulfatibacillum alkenivorans AK-01] gi|218761574|gb|ACL04040.1| Deoxyribodipyrimidine photo-lyase [Desulfatibacillum alkenivorans AK-01] Length = 456 Score = 144 bits (362), Expect = 4e-32, Method: Composition-based stats. Identities = 72/421 (17%), Positives = 144/421 (34%), Gaps = 29/421 (6%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 L W++ R N AL A ++ + V + + R F+ L + Q+ Sbjct: 24 LYWMQQSQRAKHNLALEFAISRANDLDVPVVVVFGLTVNYPEANYRHYLFMLEGLAETQR 83 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130 L ++GI + S L + L ++ + ++ Y ++ + ++ + Sbjct: 84 QLRERGIPLVVLENSPP------LAALDLGKKAALIVTDKGYMRHQREWRAQVAEQASCQ 137 Query: 131 VICKSFDDSVLLPPGSILNHALQMYKVYTP--------FRKALIQNLVQADLRSLPVPAI 182 V+ + V++P A + P F + ++ +R + + Sbjct: 138 VV--QVETDVIVPVNIASQKAEWAARTIRPKINRELDNFLLLPEKCALKNKVRDFDIQGL 195 Query: 183 RLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGT 242 L+ P + + P + F G A + KF ++ + Y + P + Sbjct: 196 DLSDPASLLKNLGMPETP-PGVSAFFKGGASAAQKRMDKFIQKSLDNYSRHHNRPDLADV 254 Query: 243 SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVC 302 S + PYL G +S R+K P++ A ++ RE + + F P+ Sbjct: 255 SGMGPYLHFGQVSAAALALRVKNL---KDADPEAQAAYLEQIIVRRELAMNFVHFTPNYD 311 Query: 303 MGKPFIPWTEKI------EWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMI 356 W +K + + + T P +AAMR++ G+MHN +RM Sbjct: 312 QYACLPTWAQKTLKERAQDPRDPLYTPDQLEACDTHDPYWNAAMREMVVTGYMHNHMRMY 371 Query: 357 TASFLVKD---LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTI 413 +++ W + LDG ++ G W + IF Sbjct: 372 WGKKILEWSPSPQKAWDVLLYLNNKYFLDGRDPNSYAGVGWIFGLHDRGWNRRPIFGTVR 431 Query: 414 Q 414 Sbjct: 432 Y 432 >gi|163731524|ref|ZP_02138971.1| deoxyribodipyrimidine photo-lyase, putative [Roseobacter litoralis Och 149] gi|161394978|gb|EDQ19300.1| deoxyribodipyrimidine photo-lyase, putative [Roseobacter litoralis Och 149] Length = 404 Score = 144 bits (362), Expect = 4e-32, Method: Composition-based stats. Identities = 68/279 (24%), Positives = 109/279 (39%), Gaps = 26/279 (9%) Query: 204 IDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQG----TSQLSPYLSIGVLSPRQC 259 + MF AL L F + Y +R+ G S LSPYL +++ + Sbjct: 5 MSQMFLPTHTAALERLSAFVPQAGRDYATRRNYDFGPGNHTHVSGLSPYLRCRLITESEV 64 Query: 260 WNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPF---IPWTEKIEW 316 N + + + A ++ E+ WR +++ + P+V W + Sbjct: 65 VNAVLQRH------SIAAAEKFMQEVFWRTYWKGWLELRPAVWTQYQVALDQAWNDVQTQ 118 Query: 317 NKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYF 376 + +G TG DA +L G++HN RM AS + L + W +G ++F Sbjct: 119 AGLRARWENACRGETGIDCFDAWAHELVETGYLHNHARMWFASIWIFTLELPWELGADFF 178 Query: 377 MSQLLDGDLASNNGGWQWAASTGNDSVPYF-RIFNPTIQGK-RFDPQGTFIRHWLPELNN 434 + LLDGD ASN GW+W A Y R N + + RF P+ +P Sbjct: 179 LRHLLDGDPASNTLGWRWVAGIQTQGKTYLARSSNISKFTENRFHPKWQLAGEAIPRSAP 238 Query: 435 VPTQYIHAPHS-----------WLDKNDLSLNYPLPIVD 462 +P + P L + DLS + L +VD Sbjct: 239 LPPEPRSLPPGTAYDPARRTGFLLHEEDLSPGFFLNMVD 277 >gi|30421116|gb|AAP31406.1| CPD photolyase [Spinacia oleracea] gi|30421159|gb|AAP31407.1| CPD photolyase [Spinacia oleracea] Length = 491 Score = 144 bits (362), Expect = 4e-32, Method: Composition-based stats. Identities = 81/452 (17%), Positives = 149/452 (32%), Gaps = 31/452 (6%) Query: 2 KATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFI 61 + + W+ D R+ DN AL A ++ + V +A G +ARQ F+ Sbjct: 21 PGSNPNGAVVYWMFRDQRVRDNWALIHAVDEANKRNAPVAVAFNLFDGFKGANARQLGFM 80 Query: 62 YASLLQVQKSL-SQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120 L +Q SL + I F Q + ++L VT R+ + Sbjct: 81 LRGLKLLQASLHNSLHIPFFLFQGEVVETIPKFLVECGASLLVTDFTPLREIRGFK---- 136 Query: 121 KLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQ-NLVQADLRSLPV 179 + L KR+ V D ++P + + L+ L + P Sbjct: 137 EELCKRVGDSVSIHEVDAHNVVPVWEASSKLEYGARTIRTKINKLLPTYLTDYPILQPPN 196 Query: 180 PAIRLTGPVTPSNIPRFFDY--PFQAIDPMF-PIGEQNALHIL----RKFCKEKVYYYVE 232 + + PV + + + + GE AL +L F +++ Y Sbjct: 197 CSWESSSPVIQWDQLIEDRLKKGAEVPEIDWCKPGETAALEVLKGSQNGFLTKRLKSYAT 256 Query: 233 QRDIPAIQG-TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFY 291 R+IP G S LSPYL G +S ++C + + + + + Sbjct: 257 DRNIPLKPGALSGLSPYLHFGQISAQRCAFEARNVRKVAPEAVDAFTEELIVRRELADNF 316 Query: 292 RHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQ----GYTGFPIIDAAMRQLNTIG 347 + Y S+ MG ++ D ++ T P+ +A+ ++ G Sbjct: 317 CYYQPNYDSL-MGAWEWARKTLMDHASDKREHLYTREQLEKAQTADPLWNASQLEMVHFG 375 Query: 348 WMHNRLRMITASFLVKDLLVDWRIGE---EYFMSQLLDGDLASNNGGWQWAASTGNDS-- 402 MH +RM A +++ +DG + G W+ +D Sbjct: 376 KMHGFMRMYWAKKILEWTSGPEEALAIAIYLNDKYEMDGRDPNGYVGCMWSICGLHDQGW 435 Query: 403 -----VPYFRIFNPTIQGKRFDPQG--TFIRH 427 R N ++F+ G ++R Sbjct: 436 RERPVFGKIRYMNYAGCKRKFNVDGYIAYVRK 467 >gi|294495094|ref|YP_003541587.1| deoxyribodipyrimidine photo-lyase type II [Methanohalophilus mahii DSM 5219] gi|292666093|gb|ADE35942.1| Deoxyribodipyrimidine photo-lyase type II [Methanohalophilus mahii DSM 5219] Length = 457 Score = 144 bits (362), Expect = 5e-32, Method: Composition-based stats. Identities = 82/449 (18%), Positives = 158/449 (35%), Gaps = 49/449 (10%) Query: 6 AMSVHLVWLRNDLRITDNKALYAACHNS---DAKVIAVFIATPEQWRQHGISARQSHFIY 62 + + L W+++ R+ N AL A + D ++ +F T + + R F+ Sbjct: 17 SGTYVLYWMQSSQRVDYNHALEFAIQQANKMDLPLLVLFCLT----KYPQANLRHYTFML 72 Query: 63 ASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKL 122 L+Q +KSL + GI F + + D E + + L ++ Y + + Sbjct: 73 EGLVQTKKSLEKLGIQFVMLKGNPVDVVHE------FARDASLLVTDQDY----QKLQRG 122 Query: 123 LEKRLQHRVICK--SFDDSVLLPPGSILNHA-LQMYKVYTPFRKALIQNLVQADLRSLPV 179 + L + C + +V++P ++ + + K L + + +L +L Sbjct: 123 WRENLAASISCPFAQVESNVIVPVENVSDKEEWSAATLRRKIHKHLDEFVHPFELSALAN 182 Query: 180 PAIRLTGPVTPSNIP----RFFDYPFQ-AIDPMFPIGEQNALHILRKFCKEKVYYYVEQR 234 ++ + N D P + G A L F ++ Y E+R Sbjct: 183 SSLEIDQDSLDLNDFEQILNSMDIDRSVKPSPRYKGGIHQAREKLSDFIAHRLGDYDEKR 242 Query: 235 DIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHL 294 + P + S +SPYL G +SP + ++++ K G+ +++ EL+ R Sbjct: 243 NDPNLDFLSGMSPYLHFGQISPLEIALKVQDA-------KKGGSTAYMEELVVRRELAMN 295 Query: 295 MAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAW-------KQGYTGFPIIDAAMRQLNTIG 347 +Y +P K + + + +Q T P +AA R++ G Sbjct: 296 FVYYDKDYDSLDCLPDWAKKTLAEHRDDFRQYIYTQEEFEQARTHDPYWNAAQREMVLTG 355 Query: 348 WMHNRLRMITASF---LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTG----- 399 MH +RM ++I LDG + G W Sbjct: 356 KMHGYMRMYWGKKILEWTDSPEQAYQIALYLNNKYELDGRDPNGYAGIAWCFGKHDRAWK 415 Query: 400 -NDSVPYFRIFNPTIQGKRFDPQGTFIRH 427 D R N ++FD G ++ Sbjct: 416 ERDIFGKVRYMNANGLKRKFDAGG-YVEK 443 >gi|225470301|ref|XP_002266483.1| PREDICTED: hypothetical protein [Vitis vinifera] Length = 485 Score = 144 bits (362), Expect = 5e-32, Method: Composition-based stats. Identities = 88/449 (19%), Positives = 156/449 (34%), Gaps = 38/449 (8%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 + W+ D R+ DN AL A ++ + V IA + G ARQ F+ L Sbjct: 21 AGPVVYWMFRDQRLRDNWALIHAVDQANKANVPVAIAFNLFDQFLGAKARQLGFMLRGLR 80 Query: 67 QVQKSLSQ-KGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125 + + L Q I F Q ++IE + ++ + + L + + + + K Sbjct: 81 LLHRDLEQTLQIPFFLFQG----EAIETIPNFLREYGASLLVTDFSPLREVQKWKEEICK 136 Query: 126 RLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185 R+ +V D ++P + + L+ + + D +L P+I+ Sbjct: 137 RVGKKVSIHEVDAHNIVPTW-VASEKLEYSARTIRGKINKLLPEYLIDFPTLQPPSIKWA 195 Query: 186 GPVTPSNIPRF----FDYPFQAIDPMF-PIGEQNALHIL----RKFCKEKVYYYVEQRDI 236 G + + + + GE A+ IL F +++ Y R+ Sbjct: 196 GTNQSIDWDDLITEVLREGAEVPEIKWCESGENAAVEILMGSKNGFLTKRLKNYSTDRNN 255 Query: 237 PAIQG-TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELI-WREFYRHL 294 P G S LSPYL G +S ++C K+ + +L ELI RE + Sbjct: 256 PLKPGALSGLSPYLHFGQISAQRCALEAKKNRKNCP----QAVDVFLEELIVRRELADNF 311 Query: 295 MAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAW------KQGYTGFPIIDAAMRQLNTIGW 348 + P + W K + S + + T P+ +A+ ++ G Sbjct: 312 CFYQPRYNSLQGAWEWARKTLMDHASDKREHIYTKEQLENAQTADPLWNASQLEMVHYGK 371 Query: 349 MHNRLRMITASF---LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDS--- 402 MH +RM A + I +DG + G W+ +D Sbjct: 372 MHGFMRMYWAKKILEWTRGPEEALAISIYLNDKYEIDGRDPNGYVGCMWSICGVHDQGWQ 431 Query: 403 ----VPYFRIFNPTIQGKRFDPQGTFIRH 427 R N ++FD G +I H Sbjct: 432 ERQIFGKIRYMNYAGCKRKFDVDG-YIAH 459 >gi|238757987|ref|ZP_04619168.1| Deoxyribodipyrimidine photo-lyase [Yersinia aldovae ATCC 35236] gi|238703741|gb|EEP96277.1| Deoxyribodipyrimidine photo-lyase [Yersinia aldovae ATCC 35236] Length = 120 Score = 143 bits (360), Expect = 7e-32, Method: Composition-based stats. Identities = 71/115 (61%), Positives = 83/115 (72%) Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425 ++DWR GE YFM+QL+DG LA+NNGGWQWAASTG D+ PYFRIFNPT QG+RFD G FI Sbjct: 1 MIDWREGERYFMAQLIDGSLAANNGGWQWAASTGTDAAPYFRIFNPTTQGERFDKDGAFI 60 Query: 426 RHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQ 480 R WLPEL VP IH P W D+ L+YPLP+VDHK A TL + AK+ Sbjct: 61 RRWLPELAAVPDSDIHQPWRWADRQQRHLDYPLPLVDHKLARLATLAAFETAKRD 115 >gi|255025620|ref|ZP_05297606.1| hypothetical protein LmonocytFSL_03450 [Listeria monocytogenes FSL J2-003] Length = 127 Score = 143 bits (360), Expect = 8e-32, Method: Composition-based stats. Identities = 59/122 (48%), Positives = 79/122 (64%), Gaps = 6/122 (4%) Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424 +L+DWR GE+YF L+D D ASN GGWQWAASTG D+VPYFRIFNP Q ++FDP G F Sbjct: 1 MLIDWRFGEKYFQQMLIDYDPASNIGGWQWAASTGTDAVPYFRIFNPITQSQKFDPTGKF 60 Query: 425 IRHWLPELNNVPTQYIHAPHSWLDKND------LSLNYPLPIVDHKKACHHTLNQYYAAK 478 IR ++ EL N+P ++IH P + L +YP PI+DHK+ + +Y +K Sbjct: 61 IREYVKELANLPDKFIHQPEKMSEIEQKEHGLLLGKDYPFPIIDHKERRKLAIARYEFSK 120 Query: 479 KQ 480 + Sbjct: 121 EH 122 >gi|299473188|emb|CBN78764.1| conserved unknown protein [Ectocarpus siliculosus] Length = 506 Score = 143 bits (360), Expect = 8e-32, Method: Composition-based stats. Identities = 74/448 (16%), Positives = 150/448 (33%), Gaps = 39/448 (8%) Query: 8 SVHLVWLRNDLRITDNKALYAA---CHNSDAKVIAVFIATPEQWRQHGISARQSHFIYAS 64 + + W+ D R DN A+ A ++ F+ Q + + R + F+ Sbjct: 29 NCVVYWMSRDQRAEDNWAMLYAKNLAQEGGVPLVVAFVLGAWQVTEPKTTLRYAGFMLKG 88 Query: 65 LLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLE 124 L + + L +K I F Q + + + + ++ + + + + RR + + Sbjct: 89 LEETEGDLRKKKIPFHLLQAA---EPRDVVPAFAKELGALAIVTDMCPLRDPTRRAREVA 145 Query: 125 KRLQ---HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPA 181 + L D ++P + + M + P A L S Sbjct: 146 EELNKSGDGTPLFQVDAHNVVPVWATSDKQETMARTIRPKIHARPDFLGAIPELSPNPQG 205 Query: 182 IRLTGPVTPSNIPRFFDYPFQAIDPMF-PIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ 240 +L D + + G + A L+ F + ++ + + + P Sbjct: 206 TKLPAATDWKAAQTSLDLDRSVPEISWLKPGAKGASDNLQSFIETRMKGFADLSNNPNED 265 Query: 241 GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNE-LIWREFYRHLMAFYP 299 S +SPY ++G +S + R+K + G +++ + ++ RE + + Sbjct: 266 VCSHMSPYFNLGQMSAQAAVMRVK-----ASRRHPDGVKAFVEQGVVRRELSDNFCFYND 320 Query: 300 SVCMGKPFIPW---------TEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMH 350 + W ++ EW L ++ T + +AA QL G MH Sbjct: 321 NYDNLSGAAGWARESLEAHANDQREWTYSVQEL---EEAKTHEDLWNAAQLQLVRDGKMH 377 Query: 351 NRLRMITASFLVKD---LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDS----- 402 N LRM A +++ + LDG + G W+ +D Sbjct: 378 NFLRMYWAKKILEWSPSPHDALERCLFFNDKYELDGRDPNGFTGCAWSVMGIHDMGWKER 437 Query: 403 --VPYFRIFNPTIQGKRFDPQGTFIRHW 428 R N ++FD Q F+ + Sbjct: 438 EVFGKIRYMNYAGCKRKFDVQ-EFVSKY 464 >gi|195332255|ref|XP_002032814.1| GM20985 [Drosophila sechellia] gi|194124784|gb|EDW46827.1| GM20985 [Drosophila sechellia] Length = 555 Score = 142 bits (359), Expect = 9e-32, Method: Composition-based stats. Identities = 70/446 (15%), Positives = 143/446 (32%), Gaps = 32/446 (7%) Query: 5 TAMSVHLVWLRNDLRITDNKALYAACHNS---DAKVIAVFIATPEQWRQHGISARQSHFI 61 +++ + W+ D R+ DN AL A + + + VF P+ R F+ Sbjct: 112 SSLGGVVYWMSRDGRVQDNWALLFAQRLALKLELPLTVVFCLVPKFLNAT---IRHYKFM 168 Query: 62 YASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDK 121 L +V++ I F ++E L + + + + + + R Sbjct: 169 MGGLQEVEQQCRALDIPFHLL----MGPAVEKLPQFVKSKDIGAVVC--DFAPLRLPRQW 222 Query: 122 L--LEKRLQHRVICKSFDDSVLLPPGSILNHALQMYK-VYTPFRKALIQNLVQADL--RS 176 + + K L V D ++P + + + L + L + + Sbjct: 223 VEDVGKALPQTVPLVQVDAHNVVPLWVASDKQEYAARTIRNKINSKLGEYLSEFPPVVQH 282 Query: 177 LPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMF-PIGEQNALHILRKFCKEKVYYYVEQRD 235 + V S + + + G + A L +FC ++ ++ ++R+ Sbjct: 283 PHGTGCKNVKAVDWSAAYASLQCDMEVDEVQWAKPGYKAACQQLYEFCSRRLRHFNDKRN 342 Query: 236 IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLM 295 P S LSP+L G +S ++C ++ + + + + Sbjct: 343 DPTADALSGLSPWLHFGHISAQRCALEVQRFRGQHKASADAFCEEAIVRRELADNFCFYN 402 Query: 296 AFYPSV--CMGKPFIPWTEKIEWNKDS-HLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNR 352 Y S+ + + +D + L+ ++ T + ++A QL G MH Sbjct: 403 EHYDSLKGLSSWAYQTLDAHRKDKRDPCYSLEELEKSLTYDDLWNSAQLQLVREGKMHGF 462 Query: 353 LRMITASF---LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDS------- 402 LRM A LDG + G W+ +D Sbjct: 463 LRMYWAKKILEWTATPEQALEYAILLNDKYSLDGRDPNGYVGCMWSIGGVHDMGWKERAV 522 Query: 403 VPYFRIFNPTIQGKRFDPQGTFIRHW 428 R N ++FD F+ + Sbjct: 523 FGKVRYMNYQGCRRKFDVNA-FVMRY 547 >gi|195581344|ref|XP_002080494.1| GD10512 [Drosophila simulans] gi|194192503|gb|EDX06079.1| GD10512 [Drosophila simulans] Length = 555 Score = 142 bits (359), Expect = 1e-31, Method: Composition-based stats. Identities = 70/446 (15%), Positives = 143/446 (32%), Gaps = 32/446 (7%) Query: 5 TAMSVHLVWLRNDLRITDNKALYAACHNS---DAKVIAVFIATPEQWRQHGISARQSHFI 61 +++ + W+ D R+ DN AL A + + + VF P+ R F+ Sbjct: 112 SSLGGVVYWMSRDGRVQDNWALLFAQRLALKLELPLTVVFCLVPKFLNAT---IRHYKFM 168 Query: 62 YASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDK 121 L +V++ I F ++E L + + + + + + R Sbjct: 169 MGGLQEVEQQCRALDIPFHLL----MGPAVEKLPQFVKSKDIGAVVC--DFAPLRLPRQW 222 Query: 122 L--LEKRLQHRVICKSFDDSVLLPPGSILNHALQMYK-VYTPFRKALIQNLVQADL--RS 176 + + K L V D ++P + + + L + L + + Sbjct: 223 VEDVGKALPQTVPLVQVDAHNVVPLWVASDKQEYAARTIRNKINSKLGEYLSEFPPVVQH 282 Query: 177 LPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMF-PIGEQNALHILRKFCKEKVYYYVEQRD 235 + V S + + + G + A L +FC ++ ++ ++R+ Sbjct: 283 PHGTGCKNVKAVDWSAAYASLQCDMEVDEVQWAKPGYKAACQQLYEFCSRRLRHFNDKRN 342 Query: 236 IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLM 295 P S LSP+L G +S ++C ++ + + + + Sbjct: 343 DPTADALSGLSPWLHFGHISAQRCALEVQRFRGQHKASADAFCEEAIVRRELADNFCFYN 402 Query: 296 AFYPSV--CMGKPFIPWTEKIEWNKDS-HLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNR 352 Y S+ + + +D + L+ ++ T + ++A QL G MH Sbjct: 403 EHYDSLKGLSSWAYQTLDAHRKDKRDPCYNLEELEKSLTYDDLWNSAQLQLVREGKMHGF 462 Query: 353 LRMITASF---LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDS------- 402 LRM A LDG + G W+ +D Sbjct: 463 LRMYWAKKILEWTATPEQALEYAILLNDKYSLDGRDPNGYVGCMWSIGGVHDMGWKERAI 522 Query: 403 VPYFRIFNPTIQGKRFDPQGTFIRHW 428 R N ++FD F+ + Sbjct: 523 FGKVRYMNYQGCRRKFDVNA-FVMRY 547 >gi|1401030|dbj|BAA05042.1| photolyase [Drosophila melanogaster] Length = 640 Score = 142 bits (359), Expect = 1e-31, Method: Composition-based stats. Identities = 72/446 (16%), Positives = 144/446 (32%), Gaps = 32/446 (7%) Query: 5 TAMSVHLVWLRNDLRITDNKALYAACHNS---DAKVIAVFIATPEQWRQHGISARQSHFI 61 +++ + W+ D R+ DN AL A + + + VF P+ R F+ Sbjct: 197 SSLGGVVYWMSRDGRVQDNWALLFAQRLALKLELPLTVVFCLVPKFLNAT---IRHYKFM 253 Query: 62 YASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDK 121 L +V++ I F S ++E L + + + + + + R Sbjct: 254 MGGLQEVEQQCRALDIPFHLLMGS----AVEKLPQFVKSKDIGAVVC--DFAPLRLPRQW 307 Query: 122 L--LEKRLQHRVICKSFDDSVLLPPGSILNHALQMYK-VYTPFRKALIQNLVQADL--RS 176 + + K L V D ++P + + + L + L + R Sbjct: 308 VEDVGKALPKSVPLVQVDAHNVVPLWVASDKQEYAARTIRNKINSKLGEYLSEFPPVVRH 367 Query: 177 LPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMF-PIGEQNALHILRKFCKEKVYYYVEQRD 235 + V S + + + G + A L +FC ++ ++ ++R+ Sbjct: 368 PHGTGCKNVNTVDWSAAYASLQCDMEVDEVQWAKPGYKAACQQLYEFCSRRLRHFNDKRN 427 Query: 236 IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLM 295 P S LSP+L G +S ++C ++ + + + + Sbjct: 428 DPTADALSGLSPWLHFGHISAQRCALEVQRFRGQHKASADAFCEEAIVRRELADNFCFYN 487 Query: 296 AFYPSV--CMGKPFIPWTEKIEWNKDS-HLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNR 352 Y S+ + + +D + L+ ++ T + ++A QL G MH Sbjct: 488 EHYDSLKGLSSWAYQTLDAHRKDKRDPCYSLEELEKSLTYDDLWNSAQLQLVREGKMHGF 547 Query: 353 LRMITASF---LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDS------- 402 LRM A LDG + G W+ +D Sbjct: 548 LRMYWAKKILEWTATPEHALEYAILLNDKYSLDGRDPNGYVGCMWSIGGVHDMGWKERAI 607 Query: 403 VPYFRIFNPTIQGKRFDPQGTFIRHW 428 R N ++FD F+ + Sbjct: 608 FGKVRYMNYQGCRRKFDVNA-FVMRY 632 >gi|290953049|ref|ZP_06557670.1| deoxyribodipyrimidine photolyase [Francisella tularensis subsp. holarctica URFT1] Length = 150 Score = 142 bits (358), Expect = 1e-31, Method: Composition-based stats. Identities = 48/152 (31%), Positives = 68/152 (44%), Gaps = 2/152 (1%) Query: 292 RHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHN 351 + PS+ + + + +AWK G TG+P+IDA MR L W++ Sbjct: 1 MQKLEDQPSIEYENLHSAYDQLRTELLNQQCFEAWKTGNTGYPMIDACMRALIATRWLNF 60 Query: 352 RLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNP 411 R+R + SF L +DWR+ Y D + + Q +G + RI+NP Sbjct: 61 RMRAMLMSFASYHLWLDWRVTSLYLAGLFTDYEPGIHYSQVQMQ--SGTTGINSIRIYNP 118 Query: 412 TIQGKRFDPQGTFIRHWLPELNNVPTQYIHAP 443 Q P G FIR WLPEL NV + IH P Sbjct: 119 IKQSIDQYPNGEFIRRWLPELENVSNENIHTP 150 >gi|108803508|ref|YP_643445.1| deoxyribodipyrimidine photo-lyase type II [Rubrobacter xylanophilus DSM 9941] gi|108764751|gb|ABG03633.1| Deoxyribodipyrimidine photo-lyase type II [Rubrobacter xylanophilus DSM 9941] Length = 464 Score = 142 bits (357), Expect = 2e-31, Method: Composition-based stats. Identities = 84/443 (18%), Positives = 155/443 (34%), Gaps = 43/443 (9%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAK---VIAVFIATPEQWRQHGISARQSHFIYASLLQ 67 L W++ R N AL A ++A ++ VF T + R F+ L Sbjct: 27 LYWMQASQRAEHNHALEYAVRQANALGRSLVCVFGLTDGYPEA---NLRHYAFMLEGLAD 83 Query: 68 VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127 V+K L ++GI F + S + ++E +R + +R Y ++VR + + Sbjct: 84 VEKGLRRRGIGFAVRRGSPDEVALEA------GRRAALIVTDRGYLRHQVRWRENV--AA 135 Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQ---ADLRSLPVPAIRL 184 + + VL+P + + + + P ++ + P L Sbjct: 136 EAGCRVTQVESDVLVPVETASDRREYAARTFRPRVSRHLERFLVGLGTTALRRPSAGAGL 195 Query: 185 TGPVTPSNIPRFFDYPFQ----AIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ 240 G + + ++ G + A +LR+F +E + Y RD P Sbjct: 196 GGLDLSDPGRVLEELDLDRGVGPVGHLYRGGTRAAKRLLRRFLEEGLPGYASGRDQPHAG 255 Query: 241 GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNEL-IWREFYRHLMAFYP 299 G S +S YL G +SP R + P+ ++L EL + RE + + + P Sbjct: 256 GVSHMSKYLHFGHISPLYVALRAR-----GSGAPEEDVGAFLEELVVRRELAVNFVRYTP 310 Query: 300 SVCMGKPFIPWTEKI--EWNKDSHLLQAWK----QGYTGFPIIDAAMRQLNTIGWMHNRL 353 + W E DS + + T P +AAM ++ G++HN + Sbjct: 311 NYDSYSCLPEWARSTLEEHRGDSRERVYTRRQLEEAATHDPYWNAAMVEMRHTGYLHNHM 370 Query: 354 RMITASF---LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSV------P 404 RM + +R LDG ++ W + Sbjct: 371 RMYWGKRILGWTRTPQHAYRTALYLNNRYFLDGRDPNSYANVAWVFGLHDRPWKERPVFG 430 Query: 405 YFRIFNPTIQGKRFDPQGTFIRH 427 R + + ++ DP G ++R Sbjct: 431 KVRYMSRSGLERKTDP-GAYVRR 452 >gi|195119354|ref|XP_002004196.1| GI19782 [Drosophila mojavensis] gi|193909264|gb|EDW08131.1| GI19782 [Drosophila mojavensis] Length = 538 Score = 142 bits (357), Expect = 2e-31, Method: Composition-based stats. Identities = 69/440 (15%), Positives = 140/440 (31%), Gaps = 33/440 (7%) Query: 11 LVWLRNDLRITDNKALYAACHNS---DAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67 + W+ D R+ DN AL A + + + VF P+ R F+ L + Sbjct: 100 VYWMSRDARVQDNWALLFAQRLALKLELPLTVVFCLVPKFLNATL---RHYKFMLGGLQE 156 Query: 68 VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKL--LEK 125 V++ + + F ++E L + +++ + + + R + + K Sbjct: 157 VEQQCRELNVSFHLLLGP----AVERLPQFVKDEKIGAVIC--DFAPLRLPRQWVEDVVK 210 Query: 126 RLQHRVICKSFDDSVLLPPGSILNHALQMYK-VYTPFRKALIQNLVQADLRSLPVPA-IR 183 L V D ++P + + + L + L + ++ Sbjct: 211 ALPAHVPLTQVDAHNVVPLWVTSDKQEYAARTIRNKINSKLSEYLTEFPPLIKHAYGNVK 270 Query: 184 LTGPVTPSNIPRFFDYPFQAIDPMF-PIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGT 242 + V + + G A L FC ++ ++ ++R+ P Sbjct: 271 GSRSVDWTAAYEMLSCDKSVDAVEWAKPGYTAACRQLYDFCTRRLRHFNDKRNDPMADAL 330 Query: 243 SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVC 302 S LSP+L G +S ++C + ++ + + + + Y S+ Sbjct: 331 SGLSPWLHFGQISAQRCVLEVGRYKTIYKESVEAYFEEAIVRRELADNFCYYNEHYDSL- 389 Query: 303 MGKPFIPWTEKIEWNKDS----HLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITA 358 G + KD + L+ + T + ++A QL G MH LRM A Sbjct: 390 KGLYSWAYESLQAHRKDKRSPCYSLEELEHSRTYDDLWNSAQLQLVKEGKMHGFLRMYWA 449 Query: 359 SF---LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDS-------VPYFRI 408 + LDG + G W+ +D R Sbjct: 450 KKILEWTETPEQALEYSILLNDKYSLDGRDPNGYVGCMWSIGGIHDQGWKERAIFGKIRY 509 Query: 409 FNPTIQGKRFDPQGTFIRHW 428 N ++FD ++ + Sbjct: 510 MNYQGCKRKFDVNA-YVMRY 528 >gi|27804353|gb|AAO22533.1| cryptochrome 2 [Brassica rapa subsp. pekinensis] Length = 157 Score = 141 bits (356), Expect = 2e-31, Method: Composition-based stats. Identities = 48/157 (30%), Positives = 81/157 (51%), Gaps = 5/157 (3%) Query: 213 QNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEF----V 268 NA +L +F ++++ Y + TS LSPYL G +S R+ + + + Sbjct: 1 SNADKLLTEFIEKQLIDYAKNSKKVVGNSTSLLSPYLHFGEISVRRVFQCARMKQIIWAR 60 Query: 269 DLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQ 328 D + + A +L + R++ R++ +P + + W+ D +AW+Q Sbjct: 61 DKNGQGEESAVLFLRGIGLRDYSRYICFNFP-FTHEQSLLSHLRFFPWDADVEKFKAWRQ 119 Query: 329 GYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365 G TG+P++DA MR+L GWMHNR+R+I +SF VK L Sbjct: 120 GRTGYPLVDAGMRELWATGWMHNRIRVIVSSFAVKFL 156 >gi|254561673|ref|YP_003068768.1| deoxyribodipyrimidine photolyase [Methylobacterium extorquens DM4] gi|254268951|emb|CAX24912.1| deoxyribodipyrimidine photolyase (DNA photolyase) [Methylobacterium extorquens DM4] Length = 467 Score = 141 bits (356), Expect = 2e-31, Method: Composition-based stats. Identities = 78/448 (17%), Positives = 143/448 (31%), Gaps = 36/448 (8%) Query: 2 KATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGIS---ARQS 58 K L ++ +R+ N AL A ++ + + + +G AR Sbjct: 15 KPREGAGYVLYLMQQAMRVPFNPALELAIEEANRLELPLLVCFGLLDGANGFPEANARHY 74 Query: 59 HFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVR 118 F+ L +L ++GI F + + + +I+ L +R Y + R Sbjct: 75 AFLLQGLADAAAALEKRGIAFLLRRATPAEVAIDL------SADAALLVLDRGYLAIQKR 128 Query: 119 RDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTP-FRKALIQNLVQADLRSL 177 +E+ Q R++ + V++P ++ + P RK L + R + Sbjct: 129 WYGAIEREAQCRIV--QVEGDVVVPLETVSTKHEYAARTLRPKLRKLWDDYLEPVEPRGV 186 Query: 178 PVPAIRLTGPVTPSNIPRFFDYPFQAIDPM-----------FPIGEQNALHILRKFCKEK 226 PA L + + D P + + + F G A L +F + Sbjct: 187 DHPAKGLIQRLKLKDGLDVSD-PEKLLAKLTLDTTVGPVKRFRGGHTEAAGHLERFLEHA 245 Query: 227 VYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELI 286 Y R+ P S +SPYL G +SP + ++ + + Sbjct: 246 FAGYGAGRNKPEAGAASHMSPYLHFGHISPVEIALAIRAAKDADDDDRSAYLEELIVRRE 305 Query: 287 WREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQ----GYTGFPIIDAAMRQ 342 + Y P E D ++ G T + AMR+ Sbjct: 306 LAMNHVFHTQGYDDYARAVPDWARKTLAEHADDPRPKLYSEEELAAGKTHDHYWNVAMRE 365 Query: 343 LNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFM---SQLLDGDLASNNGGWQWAASTG 399 + G+MHN+LRM +++ LDG A++ W Sbjct: 366 MRETGYMHNQLRMYWGKKILEWSPSPEEAFARTLRLNNRYFLDGRDANSFTNVAWIFGLH 425 Query: 400 NDSVPYFRIFNPTIQG-----KRFDPQG 422 + +IF ++FD G Sbjct: 426 DRPWQTRQIFGSVRYQSENSLRKFDANG 453 >gi|261047494|gb|ACX54506.1| cryptochrome 1 [Capsella bursa-pastoris] Length = 162 Score = 141 bits (355), Expect = 3e-31, Method: Composition-based stats. Identities = 58/162 (35%), Positives = 91/162 (56%), Gaps = 1/162 (0%) Query: 267 FVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAW 326 + + +L + RE+ R++ +P +P + + W D + +AW Sbjct: 2 ANEGNEAGEESVNLFLKSIGLREYSRYISFNHP-YSHERPLLGHLKFFPWAVDENYFKAW 60 Query: 327 KQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLA 386 +QG TG+P++DA MR+L GW+H+R+R++ +SF VK L + WR G +YF LLD DL Sbjct: 61 RQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLE 120 Query: 387 SNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHW 428 S+ GWQ+ T DS + RI NP +G +FDP G ++R W Sbjct: 121 SDALGWQYITGTLPDSREFDRIDNPQFEGYKFDPNGEYVRRW 162 >gi|322433858|ref|YP_004216070.1| DNA photolyase FAD-binding protein [Acidobacterium sp. MP5ACTX9] gi|321161585|gb|ADW67290.1| DNA photolyase FAD-binding protein [Acidobacterium sp. MP5ACTX9] Length = 470 Score = 141 bits (355), Expect = 3e-31, Method: Composition-based stats. Identities = 83/447 (18%), Positives = 151/447 (33%), Gaps = 37/447 (8%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 + W++ R DN A+ A ++ + + + + R F+ L +++ Sbjct: 31 VYWMQRAQRGIDNHAVNLAVEVANHLGLPLVVYFAAISNFPHANLRHYAFLNQGLPDIEE 90 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH- 129 L+ + I F + + E + + + + N +R + K L Sbjct: 91 DLAARNITFLMRRAPH-----ESHEQLLADVKAAIVIGDE----NPMREPERWRKTLAEK 141 Query: 130 -RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188 R+ + D V++P I Y + + L + LV + P R Sbjct: 142 IRIPFWTVDTDVVIPSSLIEKAQYGAYTIRPRLYRLLPEYLVPYENPHAQHPWHR-PKSF 200 Query: 189 TPSNIPRFFDYPFQAID------PMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGT 242 ++ ++ +D + G L L++F + + Y QR+ P GT Sbjct: 201 KSDSVHEDITMGWKDLDRSVGPVEYWKGGTHAGLAQLKRFTTKLLGDYEVQRNKPEADGT 260 Query: 243 SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVC 302 S +SPYL G L P+ + + + + WRE + + F Sbjct: 261 SSMSPYLHYGHLGPQTIALAVDAAAKANPKLQSARDSYFNELIAWRELAVNFVRFSSVYD 320 Query: 303 MGKPFIPWTEKI--EWNKDSHLLQAWKQ----GYTGFPIIDAAMRQLNTIGWMHNRLRMI 356 + W +K E +D + T + +AA Q+ GWMHN +RM Sbjct: 321 TAECAENWAQKTIAEHARDEREHIYTTKQLEFAETYDTLWNAAQIQMVRHGWMHNYMRMY 380 Query: 357 TASF---LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSV-------PYF 406 A D+ ++ +DG + G WA D Sbjct: 381 WAKKILEWTPDVDTAMKVCVYLNDKYFIDGRDPNGYAGIAWAILGKFDRAWGTRPVFGKR 440 Query: 407 RIFNPTIQGKRFDPQGTFIRH--WLPE 431 R + K+FD + +IR LPE Sbjct: 441 RYMSGASTSKKFDSKA-YIRQMNALPE 466 >gi|254461840|ref|ZP_05075256.1| conserved hypothetical protein [Rhodobacterales bacterium HTCC2083] gi|206678429|gb|EDZ42916.1| conserved hypothetical protein [Rhodobacteraceae bacterium HTCC2083] Length = 419 Score = 141 bits (355), Expect = 3e-31, Method: Composition-based stats. Identities = 66/295 (22%), Positives = 115/295 (38%), Gaps = 16/295 (5%) Query: 197 FDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIP----AIQGTSQLSPYLSIG 252 D Q P F L L +F + Y R+ S LSP++ Sbjct: 8 ADLSQQLEIPNFKPTRAAGLARLAQFAERTGDLYDRCRNYDLGPEHRANVSALSPWIRHR 67 Query: 253 VLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTE 312 +++ + + + + +++E+ WR +++ + +P+V + Sbjct: 68 LITETEVLTATLDAH------SFNASERFVHEVFWRTYFKGWLEHHPTVWSAYQAGLLRQ 121 Query: 313 KIEWNKDSHLLQAWKQ---GYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDW 369 KD L + G TG D ++L T G++HN RM AS + L + W Sbjct: 122 LKSAGKDRRLAANYAAAMAGETGIDGFDDWTKELLTTGYLHNHARMWFASIWIFTLGLPW 181 Query: 370 RIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYF-RIFNPTIQG-KRFDPQGTFIRH 427 +G ++F+ L+DGD ASN W+W A PY R+ N + +RF P Sbjct: 182 ELGADFFLRHLMDGDPASNTLAWRWVAGIQTKGRPYVARVSNISKFTDQRFSPLHQLNTQ 241 Query: 428 WLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQSL 482 P L+ H + +++ +Y L + + TL +AAK +L Sbjct: 242 VEP-LSEEADHQRHPLPNAATSAEITGDYLLLVTEDDMQVEETLPHPHAAKIGAL 295 >gi|302843525|ref|XP_002953304.1| class II photolyase [Volvox carteri f. nagariensis] gi|300261401|gb|EFJ45614.1| class II photolyase [Volvox carteri f. nagariensis] Length = 589 Score = 141 bits (355), Expect = 3e-31, Method: Composition-based stats. Identities = 87/481 (18%), Positives = 143/481 (29%), Gaps = 58/481 (12%) Query: 2 KATTAMSVHLVWLRNDLRITDNKALYAACH------------------------NSDAKV 37 + T + W+ D RI DN AL A +S+ +V Sbjct: 43 EGTIGNGPVVFWMSRDQRIEDNWALLHAIEVAQQNHRQQSAAASSGGGGSSSSSSSEPQV 102 Query: 38 IAVFIATPEQWRQHGISARQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSY 97 F P G ARQ F+ L ++Q L KGI F + + + Sbjct: 103 AVAFNLVPAFL---GAGARQFGFMLRGLRELQPKLEAKGIAFFLLKGDPARTLPDLVTRL 159 Query: 98 CLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKV 157 VT Y + R + V D ++P + + Sbjct: 160 GAGLLVT------DYSPLRLGRQWREQVCSSVPVPVHEVDAHNVVPVWVASDKREVGART 213 Query: 158 YTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDP-----MFPIGE 212 P + + +P P N + GE Sbjct: 214 LRPKIHKHLPEFLTDFPEVPQLPPWSHEVKPEPVNWETLLEEVLTRGSAVPEVDWCKPGE 273 Query: 213 QNALHILR---KFC-KEKVYYYVEQRDIPAIQ-GTSQLSPYLSIGVLSPRQCWNRLKEEF 267 AL L+ F ++ Y +R+ PA S LSPYL G L+P++ + Sbjct: 274 DAALQALQGPAGFLSSTRLSLYDSKRNDPATPRALSNLSPYLHFGQLAPQRAALEAAKHR 333 Query: 268 VDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSV-CMGKPFIPWTEKIEWNKDSHLL--Q 324 +S + + + H Y S+ C + EK +K L + Sbjct: 334 AKFKAAVESFLEELVVRRELSDNFCHYTPNYDSLACAAEWARETLEKHRGDKREFLYTRE 393 Query: 325 AWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASF---LVKDLLVDWRIGEEYFMSQLL 381 + G T + +A ++ +G MH +RM A I L Sbjct: 394 QLEAGRTHDELWNACQWEMVHVGKMHGYMRMYWAKKILEWTPGPEEAIEIAIYLNDRYEL 453 Query: 382 DGDLASNNGGWQWAASTGNDS-------VPYFRIFNPTIQGKRFDPQG--TFIRHWLPEL 432 DG S G W+ + +D R N ++FD + ++ + E+ Sbjct: 454 DGRDPSGYVGVMWSMAGIHDMGWTERPIFGKIRYMNYNGCKRKFDIKAYCAYVDRLVGEV 513 Query: 433 N 433 Sbjct: 514 R 514 >gi|85709235|ref|ZP_01040300.1| DNA photolyase-like protein [Erythrobacter sp. NAP1] gi|85687945|gb|EAQ27949.1| DNA photolyase-like protein [Erythrobacter sp. NAP1] Length = 412 Score = 141 bits (355), Expect = 3e-31, Method: Composition-based stats. Identities = 60/223 (26%), Positives = 93/223 (41%), Gaps = 17/223 (7%) Query: 208 FPIGEQNALHILRKFCKEKVYYYVEQRDIPA-------IQGTSQLSPYLSIGVLSPRQCW 260 F + L L +F Y R+ + SQLSP+L G+LS R+ Sbjct: 3 FTPDRKAGLDRLAEFAPRSGSAYASNRNYDDGVPEDGMLSNVSQLSPWLHAGLLSEREVI 62 Query: 261 NRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDS 320 E A ++ E+ WR +++ + PSV I +S Sbjct: 63 LAALNEH------GPGKAEKFIAEVFWRVYFKGYLEQRPSVWDAYKQGRDGALIAVENNS 116 Query: 321 HLLQAWKQ---GYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFM 377 L + +++ G TG D +R+L G++HN RM AS + L +DW++G ++F+ Sbjct: 117 GLAKVYEEAVAGRTGIEAFDQWVRELVQTGYLHNHARMWFASVWIFTLKLDWQLGADFFL 176 Query: 378 SQLLDGDLASNNGGWQWAASTGNDSVPY-FRIFNPTIQGKRFD 419 L+DGD ASN W+W A Y R N +R D Sbjct: 177 RHLMDGDAASNTLSWRWVAGLHTKGKNYAARASNIKRYTERRD 219 >gi|147862663|emb|CAN79335.1| hypothetical protein VITISV_026088 [Vitis vinifera] Length = 514 Score = 141 bits (355), Expect = 3e-31, Method: Composition-based stats. Identities = 92/468 (19%), Positives = 162/468 (34%), Gaps = 48/468 (10%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 + W+ D R+ DN AL A ++ + V IA + G ARQ F+ L Sbjct: 33 AGPVVYWMFRDQRLRDNWALIHAVDQANKANVPVAIAFNLFDQFLGAKARQLGFMLRGLR 92 Query: 67 QVQKSLSQ-KGIVFQYHQCSNFDDSIEWLDSYCL-QQRVTKLFYNRQYEINEVRRDKLLE 124 + + L Q I F Q F+ S LDS+ + + + L + + + + Sbjct: 93 LLHRDLEQTLQIPFFLFQAYTFEISASLLDSHSVWEYGASLLVTDFSPLREVQKWKEEIC 152 Query: 125 KRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL 184 KR+ +V D ++P + + L+ + + D +L P+I+ Sbjct: 153 KRVGKKVSIHEVDAHNIVPTW-VASEKLEYSARTIRGKINKLLPEYLIDFPTLQPPSIKW 211 Query: 185 TGPVTPSNIPRF----FDYPFQAIDPMF-PIGEQNALHIL----RKFCKEKVYYYVEQRD 235 G + + + + GE A+ IL F +++ Y R+ Sbjct: 212 AGTNQSIDWDDLITEVLREGAEVPEIKWCESGENAAVEILMGSKNGFLTKRLKNYSTDRN 271 Query: 236 IPAIQG-TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELI-WREFYRH 293 P G S LSPYL G +S ++C K+ + +L ELI RE + Sbjct: 272 NPLKPGALSGLSPYLHFGQISAQRCALEAKKIQKNCP----QAVDVFLEELIVRRELADN 327 Query: 294 LMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAW------KQGYTGFPIIDAAMRQLNTIG 347 + P + W K + S + + T P+ +A+ ++ G Sbjct: 328 FCFYQPRYNSLQGAWEWARKTLMDHASDKREHIYTKEQLENAQTADPLWNASQLEMVHYG 387 Query: 348 WMHNRLRM--------ITASFLVKDLLVDWRIGEEYFM-------SQLLDGDLASNNGGW 392 MH +R + K +L R EE +DG + G Sbjct: 388 KMHGFMRQEMQDITILEIQMYWAKKILEWTRGPEEALAISIYLNDKYEIDGRDPNGYVGC 447 Query: 393 QWAASTGNDS-------VPYFRIFNPTIQGKRFDPQG--TFIRHWLPE 431 W+ +D R N ++FD G +++ + E Sbjct: 448 MWSICGVHDQGWQERQIFGKIRYMNYAGCKRKFDVDGYIAYVKRLVTE 495 >gi|269839711|ref|YP_003324403.1| deoxyribodipyrimidine photo-lyase [Thermobaculum terrenum ATCC BAA-798] gi|269791441|gb|ACZ43581.1| Deoxyribodipyrimidine photo-lyase [Thermobaculum terrenum ATCC BAA-798] Length = 449 Score = 140 bits (354), Expect = 3e-31, Method: Composition-based stats. Identities = 82/453 (18%), Positives = 146/453 (32%), Gaps = 41/453 (9%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 + + D R+ DN AL A + + + + + + R G S F+ L +V + Sbjct: 2 VYVMSRDQRVDDNFALLLAQREALERRLPLVVLFVLRERPGGRSREHFLFMLDGLEEVSR 61 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130 L + GI + Q S ++ L + ++ + R +LL + + Sbjct: 62 RLQELGIAWVLRQGSPSRTTLATL----RELDAASVYLDFSPLRGARARAELLAREFE-- 115 Query: 131 VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVP---AIRLTGP 187 D ++P + + L+ ++A R + P A L Sbjct: 116 GSTHVVDAHNVIPAWEVSDKQEVAAHTMRSKVHKLLGRYLEAPPRIVRHPYSLADHLETL 175 Query: 188 VTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSP 247 P I P GE+ A L+KF EK+ YY R+ S LSP Sbjct: 176 SFEQARDIVHGLPACGIRIAHPPGEKAARRHLQKFIDEKLEYYALLRNDVGRDFQSDLSP 235 Query: 248 YLSIGVLS--------------PRQCWNRLKEEFVDLLIKPKSGAFSWLNELI-WREFYR 292 +L +G +S P R K G + L E+I +E Sbjct: 236 WLHLGHISSLRVALQVIEAVGRPPLLLERAKLAEHSGQPSAYDGMNALLEEMIVRKELSD 295 Query: 293 HLMAFYPSVCMGKPFIPWTEKI--EWNKDSHLLQA----WKQGYTGFPIIDAAMRQLNTI 346 + P + W + +D W++ T +AA QL + Sbjct: 296 NFCLHNPHYKSLQGAPEWGRQTLEAHREDPREFTYSLQEWEEARTHDRAWNAAQTQLRRV 355 Query: 347 GWMHNRLRMITASF---LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSV 403 G +H +RM A + + +DG + G W+ +D Sbjct: 356 GKIHGYMRMYWAKKMLEWSRSPEEAVEMCVYLNDKYSVDGGDPNGYAGILWSIGGLHDHP 415 Query: 404 -------PYFRIFNPTIQGKRFDPQGTFIRHWL 429 R + +++D ++ + WL Sbjct: 416 WKERPVFGKIRYMSAEGIRRKYDLD-SYCKRWL 447 >gi|260431372|ref|ZP_05785343.1| deoxyribodipyrimidine photo-lyase family protein [Silicibacter lacuscaerulensis ITI-1157] gi|260415200|gb|EEX08459.1| deoxyribodipyrimidine photo-lyase family protein [Silicibacter lacuscaerulensis ITI-1157] Length = 461 Score = 140 bits (354), Expect = 3e-31, Method: Composition-based stats. Identities = 57/237 (24%), Positives = 94/237 (39%), Gaps = 15/237 (6%) Query: 195 RFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIP----AIQGTSQLSPYLS 250 RF + F N L L++F +Y R+ S LSP+L Sbjct: 51 RFPELAEAKETISFRPTRANGLARLKQFVGRTGRHYASTRNYDFGTERRSNVSGLSPWLR 110 Query: 251 IGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCM--GKPFI 308 +++ + + L + A ++ E+ WR +++ + PSV + Sbjct: 111 HRLITETEVLAAV------LASHNFNAAEKFVQEVFWRTYFKGWLEQRPSVWTLYQRDLS 164 Query: 309 PWTEKIEWNKD-SHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLV 367 E++ + G TG D +R+L G++HN RM AS + L + Sbjct: 165 HACERLSDDDCLRARFSDAVNGNTGIDCFDHWVRELLVTGYLHNHARMWFASIWIFTLRL 224 Query: 368 DWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYF-RIFNPTIQGK-RFDPQG 422 W++G ++F+ LLDGD ASN W+W Y R N + RF P+G Sbjct: 225 PWQLGADFFLRHLLDGDPASNTLSWRWVGGLHTKGKTYLARPDNIAKYTEGRFQPKG 281 >gi|31322270|gb|AAP22941.1| cryptochrome 2 [Arvicanthis ansorgei] Length = 139 Score = 140 bits (354), Expect = 4e-31, Method: Composition-based stats. Identities = 52/133 (39%), Positives = 69/133 (51%), Gaps = 2/133 (1%) Query: 308 IPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK-DLL 366 P +I W+++ L W +G TGFP IDA M QL GW+H+ R A FL + DL Sbjct: 8 NPICIQIPWDRNPEALAKWAEGKTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLW 67 Query: 367 VDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIR 426 V W G F LLD D + N G W W S +F + P G+R DP G +IR Sbjct: 68 VSWESGVRVFDELLLDADFSVNAGSWMW-LSCSAFFQQFFHCYCPVGFGRRTDPSGDYIR 126 Query: 427 HWLPELNNVPTQY 439 +LP+L P++Y Sbjct: 127 RYLPKLKGFPSRY 139 >gi|224371018|ref|YP_002605182.1| DNA deoxyribo-dipyrimidine photolyase family protein [Desulfobacterium autotrophicum HRM2] gi|223693735|gb|ACN17018.1| DNA deoxyribo-dipyrimidine photolyase family protein [Desulfobacterium autotrophicum HRM2] Length = 453 Score = 140 bits (353), Expect = 4e-31, Method: Composition-based stats. Identities = 85/443 (19%), Positives = 158/443 (35%), Gaps = 42/443 (9%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAK---VIAVFIATPEQWRQHGISARQSHFIYASLLQ 67 L W++ R +N AL A + ++ + V+ VF T + + R F+ L + Sbjct: 22 LYWMQQAQRAEENHALEYAIYQANQQDKMVVVVFSLTND---SPDANLRHYTFMLEGLNE 78 Query: 68 VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127 +KSL ++GI + + ++ ++ + + +R Y ++ K + + Sbjct: 79 TRKSLEKRGIRMIFRIGHPVKEVLDI------GRKASMIVCDRGYLRHQRAWRKAIAE-- 130 Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKA-LIQNLVQADLRSLPVPAIRLTG 186 + + V++P + + A P L Q L + L P++ + Sbjct: 131 KSGCPVVQVETDVVIPVEQVSDKAEYAAYTIRPKISRQLDQYLTPIEHIELRNPSLEIAL 190 Query: 187 PVTPSNIPRFF------DYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ 240 T + D Q + +F G A F + Y R+ P Sbjct: 191 KSTELERIKTVLKDLNVDDSIQPVSHIFRGGTSEAKARFDVFLDQHFSRYAVHRNEPKYL 250 Query: 241 GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELI-WREFYRHLMAFYP 299 S +SPYL G +SP ++K + + A ++L ELI RE + + F P Sbjct: 251 AVSCMSPYLHFGQISPLYLALKIKA----CKNEAQEAAAAYLEELIVRRELAANFVYFNP 306 Query: 300 SVCMGKPFIPWTEKI--EWNKDSHLLQAWK----QGYTGFPIIDAAMRQLNTIGWMHNRL 353 W K E KD K T +AAM+++ G+MHN + Sbjct: 307 YYDSLGCLPAWPTKTLAEHEKDVRDPVYTKSQLIACRTHDEYWNAAMKEMIVTGFMHNYM 366 Query: 354 RMITASFLVKDLLVDWRIGEEYFM---SQLLDGDLASNNGGWQWAASTGNDSV------P 404 RM +++ R E + LDG ++ G W + + Sbjct: 367 RMYWGKKILEWSPTPLRAYETMIDLNNAYFLDGRDPNSYAGVGWIFGLHDRAWFERPIFG 426 Query: 405 YFRIFNPTIQGKRFDPQGTFIRH 427 R + ++ D +G ++ Sbjct: 427 KVRYMAASGLERKCDIKG-YVDR 448 >gi|24586398|ref|NP_724613.1| photorepair, isoform B [Drosophila melanogaster] gi|21627730|gb|AAM68868.1| photorepair, isoform B [Drosophila melanogaster] Length = 535 Score = 140 bits (353), Expect = 5e-31, Method: Composition-based stats. Identities = 72/446 (16%), Positives = 143/446 (32%), Gaps = 32/446 (7%) Query: 5 TAMSVHLVWLRNDLRITDNKALYAACHNS---DAKVIAVFIATPEQWRQHGISARQSHFI 61 +++ + W+ D R+ DN AL A + + + VF P+ R F+ Sbjct: 92 SSLGGVVYWMSRDGRVQDNWALLFAQRLALKLELPLTVVFCLVPKFLNAT---IRHYKFM 148 Query: 62 YASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDK 121 L +V++ I F S ++E L + + + + + + R Sbjct: 149 MGGLQEVEQQCRALDIPFHLLMGS----AVEKLPQFVKSKDIGAVVC--DFAPLRLPRQW 202 Query: 122 L--LEKRLQHRVICKSFDDSVLLPPGSILNHALQMYK-VYTPFRKALIQNLVQADL--RS 176 + + K L V D ++P + + + L + L R Sbjct: 203 VEDVGKALPKSVPLVQVDAHNVVPLWVASDKQEYAARTIRNKINSKLGEYLSVFPPVVRH 262 Query: 177 LPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMF-PIGEQNALHILRKFCKEKVYYYVEQRD 235 + V S + + + G + A L +FC ++ ++ ++R+ Sbjct: 263 PHGTGCKNVNTVDWSAAYASLQCDMEVDEVQWAKPGYKAACQQLYEFCSRRLRHFNDKRN 322 Query: 236 IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLM 295 P S LSP+L G +S ++C ++ + + + + Sbjct: 323 DPTADALSGLSPWLHFGHISAQRCALEVQRFRGQHKASADAFCEEAIVRRELADNFCFYN 382 Query: 296 AFYPSV--CMGKPFIPWTEKIEWNKDS-HLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNR 352 Y S+ + + +D + L+ ++ T + ++A QL G MH Sbjct: 383 EHYDSLKGLSSWAYQTLDAHRKDKRDPCYSLEELEKSLTYDDLWNSAQLQLVREGKMHGF 442 Query: 353 LRMITASF---LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDS------- 402 LRM A LDG + G W+ +D Sbjct: 443 LRMYWAKKILEWTATPEHALEYAILLNDKYSLDGRDPNGYVGCMWSIGGVHDMGWKERAI 502 Query: 403 VPYFRIFNPTIQGKRFDPQGTFIRHW 428 R N ++FD F+ + Sbjct: 503 FGKVRYMNYQGCRRKFDVNA-FVMRY 527 >gi|8134633|sp|Q28811|PHR_POTTR RecName: Full=Deoxyribodipyrimidine photo-lyase; AltName: Full=DNA photolyase; AltName: Full=Photoreactivating enzyme gi|1401039|dbj|BAA05041.1| photolyase [Potorous tridactylus] Length = 532 Score = 140 bits (353), Expect = 5e-31, Method: Composition-based stats. Identities = 67/433 (15%), Positives = 135/433 (31%), Gaps = 21/433 (4%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 + W+ D R+ DN A A + + + + + G + R F+ L +V + Sbjct: 100 VYWMSRDQRVQDNWAFLYAQRLALKQKLPLHVCFCLAPCFLGATIRHYDFMLRGLEEVAE 159 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130 + I F D L ++ + + + ++ + K ++ L + Sbjct: 160 ECEKLCIPFHLLLGLPKD----VLPAFVQTHGIGGIVTDFSPLLHHTQWVKDVQDALPRQ 215 Query: 131 VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQ--ADLRSLPVPAIRLTGPV 188 V D ++P + + + + + + P + PV Sbjct: 216 VPFVQVDAHNIVPCWVASDKQEYGARTIRHKIHDRLPHFLTEFPPVICHPYTSNVQAEPV 275 Query: 189 TPSNIPRFFDYPFQAIDPMF-PIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSP 247 + + + G + L +L+ F E++ Y+ R+ P S LSP Sbjct: 276 DWNGCRAGLQVDRSVKEVSWAKPGTASGLTMLQSFIAERLPYFGSDRNNPNKDALSNLSP 335 Query: 248 YLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPF 307 + G +S ++ +++ + + + + Y + + Sbjct: 336 WFHFGQVSVQRAILEVQKHRSRYPDSVTNFVEEAVVRRELADNFCFYNKNYDKLEGAYDW 395 Query: 308 IPWTEKIEWNKDSHLLQAWKQ---GYTGFPIIDAAMRQLNTIGWMHNRLRMITASF---L 361 T ++ L + +Q G T P+ +AA Q G MH LRM A Sbjct: 396 AQTTLRLHAKDKRPHLYSLEQLESGKTHDPLWNAAQMQTVKEGKMHGFLRMYWAKKILEW 455 Query: 362 VKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDS-------VPYFRIFNPTIQ 414 + LDG + G W+ +D R N Sbjct: 456 TRSPEEALEFAIYLNDRFQLDGWDPNGYVGCMWSICGIHDQGWAEREIFGKIRYMNYAGC 515 Query: 415 GKRFDPQGTFIRH 427 ++FD F R Sbjct: 516 KRKFDV-AEFERK 527 >gi|171684045|ref|XP_001906964.1| hypothetical protein [Podospora anserina S mat+] gi|170941983|emb|CAP67635.1| unnamed protein product [Podospora anserina S mat+] Length = 813 Score = 140 bits (352), Expect = 6e-31, Method: Composition-based stats. Identities = 55/141 (39%), Positives = 82/141 (58%), Gaps = 5/141 (3%) Query: 320 SHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQ 379 + +L+ + G TG +IDA+ R+L G+ NR R ASFL K L +DWR G E++ Sbjct: 499 AKILERFNLGTTGMGLIDASQRELLHTGYTSNRARQNVASFLAKHLDIDWRYGAEWYEML 558 Query: 380 LLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPT-Q 438 L+D D++SN WQ+ A GND + RIFNP QG +DP G+++R W+PE++ + + Sbjct: 559 LVDYDVSSNWANWQYVAGVGNDPRGHMRIFNPVKQGFEYDPSGSYVRTWIPEVSGLEKLE 618 Query: 439 YIHAPHSW----LDKNDLSLN 455 P + L+K LS N Sbjct: 619 NAFQPWTASKEELEKTGLSGN 639 Score = 100 bits (248), Expect = 8e-19, Method: Composition-based stats. Identities = 56/366 (15%), Positives = 112/366 (30%), Gaps = 74/366 (20%) Query: 1 MKATTA-MSVHLVWLRNDLRITDNKALYAACHNSDAK----VIAVFIATPEQ-------- 47 M + A ++ + +R DLR +DN +AA D + + V++ +Q Sbjct: 21 MTVSKAPQNILIHIIRRDLRTSDNPLFHAAATAPDEEKFDAYLPVYVFDAQQIDVSGFIQ 80 Query: 48 ---------------WRQHGISARQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIE 92 H ++ F+ ++ + ++L + D Sbjct: 81 SAGATNPYGSPRSQVAGYHRCGPHRAKFLGEAVWDLSETLKELKSGLFIRVGRIPDVVET 140 Query: 93 WLDSYCLQ-QRVTKLFYNRQYEINEVRRDKLLEKRLQHR-------VICKSFDDSVLLPP 144 + + ++ ++ E +K + + V K F D + Sbjct: 141 LVSELAKKDAKIGAVWMTSHEGSEEKADEKAVASLCKKVGAKWKLWVDEKYFIDDCRVSS 200 Query: 145 GSILNHALQMYKVYTPF---------RKALIQNLVQADLRSLPVPA-----IRLTGPVTP 190 S + + F R + LV +P + Sbjct: 201 QSTKRSSCPCARSLVRFFRLSRRVHCRLSFDAALVAPQSSPFHIPDSLDRLVEFLVAPVK 260 Query: 191 SNIPRFFDYPFQAIDPM-FPIGEQNALHILRKFCKEKVY-YYVEQRD-IPAIQGTSQLSP 247 +P +YP A + GE AL L+ Y R+ + + +++LS Sbjct: 261 DFLPNKPEYPKGAESAHPYQGGEHAALQRLKDLISSGAATTYDTTRNGLLGTEFSTKLSA 320 Query: 248 YLSIGVLSPRQCWNRL---------------------KEEFVDLLIKPKSGAFSWLNELI 286 +L+ G ++ RQ + KEE + +G S EL+ Sbjct: 321 FLAQGCITARQVHAAMDSFERGTDPAFKDVEGFGALTKEEGMSEDEAQNTGMESIRTELL 380 Query: 287 WREFYR 292 WR++ R Sbjct: 381 WRDYMR 386 >gi|24586396|ref|NP_523653.2| photorepair, isoform A [Drosophila melanogaster] gi|7304148|gb|AAF59185.1| photorepair, isoform A [Drosophila melanogaster] gi|19527513|gb|AAL89871.1| RE21178p [Drosophila melanogaster] gi|220948232|gb|ACL86659.1| phr-PA [synthetic construct] gi|220960434|gb|ACL92753.1| phr-PA [synthetic construct] Length = 555 Score = 140 bits (352), Expect = 7e-31, Method: Composition-based stats. Identities = 72/446 (16%), Positives = 143/446 (32%), Gaps = 32/446 (7%) Query: 5 TAMSVHLVWLRNDLRITDNKALYAACHNS---DAKVIAVFIATPEQWRQHGISARQSHFI 61 +++ + W+ D R+ DN AL A + + + VF P+ R F+ Sbjct: 112 SSLGGVVYWMSRDGRVQDNWALLFAQRLALKLELPLTVVFCLVPKFLNAT---IRHYKFM 168 Query: 62 YASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDK 121 L +V++ I F S ++E L + + + + + + R Sbjct: 169 MGGLQEVEQQCRALDIPFHLLMGS----AVEKLPQFVKSKDIGAVVC--DFAPLRLPRQW 222 Query: 122 L--LEKRLQHRVICKSFDDSVLLPPGSILNHALQMYK-VYTPFRKALIQNLVQADL--RS 176 + + K L V D ++P + + + L + L R Sbjct: 223 VEDVGKALPKSVPLVQVDAHNVVPLWVASDKQEYAARTIRNKINSKLGEYLSVFPPVVRH 282 Query: 177 LPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMF-PIGEQNALHILRKFCKEKVYYYVEQRD 235 + V S + + + G + A L +FC ++ ++ ++R+ Sbjct: 283 PHGTGCKNVNTVDWSAAYASLQCDMEVDEVQWAKPGYKAACQQLYEFCSRRLRHFNDKRN 342 Query: 236 IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLM 295 P S LSP+L G +S ++C ++ + + + + Sbjct: 343 DPTADALSGLSPWLHFGHISAQRCALEVQRFRGQHKASADAFCEEAIVRRELADNFCFYN 402 Query: 296 AFYPSV--CMGKPFIPWTEKIEWNKDS-HLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNR 352 Y S+ + + +D + L+ ++ T + ++A QL G MH Sbjct: 403 EHYDSLKGLSSWAYQTLDAHRKDKRDPCYSLEELEKSLTYDDLWNSAQLQLVREGKMHGF 462 Query: 353 LRMITASF---LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDS------- 402 LRM A LDG + G W+ +D Sbjct: 463 LRMYWAKKILEWTATPEHALEYAILLNDKYSLDGRDPNGYVGCMWSIGGVHDMGWKERAI 522 Query: 403 VPYFRIFNPTIQGKRFDPQGTFIRHW 428 R N ++FD F+ + Sbjct: 523 FGKVRYMNYQGCRRKFDVNA-FVMRY 547 >gi|46560024|gb|AAT00492.1| cryptochrome 2 [Cebus apella] Length = 166 Score = 140 bits (352), Expect = 7e-31, Method: Composition-based stats. Identities = 56/168 (33%), Positives = 77/168 (45%), Gaps = 5/168 (2%) Query: 229 YYVEQRDIPA--IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELI 286 Y R + + LSPYL G LS R + RL + + + + + S +L+ Sbjct: 1 NYERPRMNANSLLASPTGLSPYLRFGCLSCRLFYYRLWDLYKKVK-RNSTPPLSLFGQLL 59 Query: 287 WREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTI 346 WREF+ P + P +I W+++ L W +G TGFP IDA M QL Sbjct: 60 WREFFYTAATNNPRFDRMEG-NPICIQIPWDRNPEALAKWAEGKTGFPWIDAIMTQLRQE 118 Query: 347 GWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQ 393 GW+H+ R A FL + DL V W G F LLD D + N G W Sbjct: 119 GWIHHLARHAVACFLTRGDLWVSWESGVRVFDDVLLDADFSVNAGSWM 166 >gi|5081541|gb|AAD39433.1|AF129458_1 class II DNA photolyase [Chlamydomonas reinhardtii] Length = 612 Score = 139 bits (351), Expect = 8e-31, Method: Composition-based stats. Identities = 82/462 (17%), Positives = 140/462 (30%), Gaps = 42/462 (9%) Query: 2 KATTAMSVHLVWLRNDLRITDNKALYAACHNSDA-----KVIAVFIATPEQWRQHGISAR 56 + + W+ D R+ DN AL A + +V F P G AR Sbjct: 60 PGSIGKGPVVYWMSRDQRLADNWALLHAIEAAQGAAGSSQVAVAFNLVPAFL---GAGAR 116 Query: 57 QSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINE 116 Q F+ L Q+ L +GI F + + + VT Y Sbjct: 117 QFGFMLRGLRQLAPRLEARGIKFYLLKGDPAHTLPQLVSGLGAGLLVT------DYSPLR 170 Query: 117 VRR--DKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKA----LIQNLV 170 + R + L V D ++P + + P ++ Sbjct: 171 LGRTWRDQVCSALGS-VPVHEVDAHNVVPVWAASEKREVGARTLRPKIHKALPEFLREFP 229 Query: 171 QADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFP-IGEQNALHIL---RKFCK-E 225 + PA+ I + + GE+ AL L R F Sbjct: 230 EVPTLPAWTPAVAPEAVDWDGLISEVLSRGADVPEVEWCTPGEEAALEALTGPRGFLSPA 289 Query: 226 KVYYYVEQRDIPAIQG-TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNE 284 ++ Y +R+ PA S LSPYL G L+P++ + +S + Sbjct: 290 RLSLYDTKRNDPATPSALSGLSPYLHFGQLAPQRAALEAAKHRAKYKAAVESYLEELVVR 349 Query: 285 LIWREFYRHLMAFYPSV-CMGKPFIPWTEKIEWNKDSHLLQAWKQ--GYTGFPIIDAAMR 341 + + H Y S+ + +K +K L + G T + +AA Sbjct: 350 RELADNFCHYCPTYDSLEAAAEWARDSLDKHRTDKREFLYTRDQLECGATHDELWNAAQL 409 Query: 342 QLNTIGWMHNRLRMITASF---LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAAST 398 ++ +G MH +RM A + LDG G W+ + Sbjct: 410 EMVHVGKMHGFMRMYWAKKILEWTQGPEQAIEWAIYLNDRYELDGRDPGGYTGVLWSMAG 469 Query: 399 GNDS-------VPYFRIFNPTIQGKRFDPQG--TFIRHWLPE 431 +D R N ++FD + ++ + E Sbjct: 470 VHDMGWAERAVFGKIRYMNYNGCKRKFDIKAYVAYVSKAVAE 511 >gi|31321921|gb|AAM50087.1| cryptochrome 4 [Gallus gallus] Length = 140 Score = 139 bits (351), Expect = 8e-31, Method: Composition-based stats. Identities = 56/138 (40%), Positives = 74/138 (53%), Gaps = 2/138 (1%) Query: 315 EWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK-DLLVDWRIGE 373 W +D+ L WK TGFP IDA M QL GW+H+ R A FL + DL + W G Sbjct: 1 RWYEDAERLHKWKTAQTGFPWIDAIMTQLRQEGWIHHLARHAAACFLTRGDLWISWEEGM 60 Query: 374 EYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELN 433 + F LLD D + N G W W S Y RIF P G+R DP+G +IR +LP L Sbjct: 61 KVFEELLLDADYSINAGNWMW-LSASAFFHHYTRIFCPVRFGRRTDPEGQYIRKYLPILK 119 Query: 434 NVPTQYIHAPHSWLDKND 451 N P++YI+ P + ++ Sbjct: 120 NFPSKYIYEPWTASEEEQ 137 >gi|145544633|ref|XP_001458001.1| hypothetical protein [Paramecium tetraurelia strain d4-2] gi|124425820|emb|CAK90604.1| unnamed protein product [Paramecium tetraurelia] Length = 453 Score = 139 bits (351), Expect = 8e-31, Method: Composition-based stats. Identities = 88/444 (19%), Positives = 154/444 (34%), Gaps = 54/444 (12%) Query: 12 VWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQKS 71 W++ R N AL A ++ + I +F + + R HF+ L Q++ S Sbjct: 22 YWIQASQRTKYNHALELAIQKANQEQIPLFCFF-GLTKYPAANQRPYHFMLEGLQQLKTS 80 Query: 72 LSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHRV 131 L+ + I+F + S D +I Q L + Y +R K K++ + Sbjct: 81 LADRKILFGVAKQSPDDLAISI------AQNAKLLIVDCGY----LRIQKQWRKKVADTI 130 Query: 132 ICK--SFDDSVLLPPGSILNHALQMYKVYTP--------FRKALIQNLVQADLRSLPVPA 181 C+ + VL+P K P F K L + + + LP Sbjct: 131 DCQFIQVETDVLVPVEQASQKEEWAAKTIRPKIQSLTKYFAKELNEETLVKQMDKLPFQE 190 Query: 182 IRLTGPVTPSNIPRFFDYPFQ---AIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPA 238 ++ + D +I F GE A L +F +K+ Y + R+ P+ Sbjct: 191 YDISNITKVID-----DLGVDKSVSIVQQFKGGEIEAQKRLEEFLNKKLKNYAKNRNDPS 245 Query: 239 IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFY 298 + TS LSPYL G++SP + + P S+L ELI R +Y Sbjct: 246 LNATSNLSPYLHFGMISPLHIYLEA------MKFPPSESRESFLEELIVRRELSMNFCYY 299 Query: 299 PSVCMGKPFIPWTEKIEWNKDSHL-------LQAWKQGYTGFPIIDAAMRQLNTIGWMHN 351 + +P K + + L ++ T ++A + G + Sbjct: 300 NDLYDKYEGLPDWAKNTLQEHAKDKRDYIYTLDQLEKAKTHDVYWNSAQLEAIHKGKISG 359 Query: 352 RLRMITASFLVKDLLVDWRIGEEYF----MSQLLDGDLASNNGGWQWAASTGNDSVPYFR 407 +RM ++ + + EY LDG A+ G W + + Sbjct: 360 YMRMYWGKKVI-EWTESPQQAFEYLVFLNDKYHLDGRDANGYTGVAWCFGKHDRPWTGRK 418 Query: 408 IFNPTIQG------KRFDPQGTFI 425 IF ++FD G ++ Sbjct: 419 IFGNIRYMIDSGLKRKFD-TGQYV 441 >gi|88604444|ref|YP_504622.1| deoxyribodipyrimidine photolyase [Methanospirillum hungatei JF-1] gi|88189906|gb|ABD42903.1| Deoxyribodipyrimidine photo-lyase type II [Methanospirillum hungatei JF-1] Length = 448 Score = 139 bits (350), Expect = 1e-30, Method: Composition-based stats. Identities = 82/436 (18%), Positives = 142/436 (32%), Gaps = 42/436 (9%) Query: 11 LVWLRNDLRITDNKALYAACHNSDA---KVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67 L W+++ +R N AL A S+ +I VF + F++ L Sbjct: 21 LYWMQSAVRTRYNHALEYAIERSNELKKPLIVVFCLDHSYPEATPV---HYRFLWEGLQD 77 Query: 68 VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127 V +SL+++GI FQ S D D + ++ + + + + Sbjct: 78 VNRSLTERGIGFQILSGSPVDIIPRIAD------DACMMVTDQGWTRLQREWRQKVIDTA 131 Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPF----RKALIQNLVQADLRSLPVPAIR 183 +V+ + +++P + P A + L+ ++ Sbjct: 132 PCKVVIVETN--LIVPVHVASPKEEWSAGTFRPKITRQLPAFLHPLICRHVQGESTDCEP 189 Query: 184 LTG-PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGT 242 TG PV P P GE A H L F E + Y + P T Sbjct: 190 FTGLPVGAEQQFTGKPLPEDTSTQFLPGGENAADHYLSAFLSETIDRYEATHNDPTAHAT 249 Query: 243 SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELI-WREFYRHLMAFYPSV 301 S LS YL G +SP R+ E P G ++L +LI RE + + + P Sbjct: 250 SYLSAYLHFGHISPLDIALRVMEH-------PGPGTNAFLEQLIVRRELSHNFVWYNPLY 302 Query: 302 CMGKPFIPWTE------KIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRM 355 + WT +I+ + S+ +++ T +A + G++H LRM Sbjct: 303 DHYEGLPEWTRKSLEKHRIDTREYSYTPADFEECRTHDRAWNAMQLSMIRTGYLHGYLRM 362 Query: 356 ITASFLVKDLLVDWRIGEEYFM---SQLLDGDLASNNGGWQWAASTGNDSV------PYF 406 +++ LDG + G W + Sbjct: 363 YWGKKILEWTETPEDAYAIALYLNNRYELDGRDPNGYCGVAWCFGKHDRPWKERPVFGTI 422 Query: 407 RIFNPTIQGKRFDPQG 422 R N ++F G Sbjct: 423 RYMNEAGLRRKFRLDG 438 >gi|50752305|ref|XP_422729.1| PREDICTED: similar to photolyase [Gallus gallus] Length = 499 Score = 139 bits (350), Expect = 1e-30, Method: Composition-based stats. Identities = 77/437 (17%), Positives = 137/437 (31%), Gaps = 27/437 (6%) Query: 11 LVWLRNDLRITDNKALYAACHNS---DAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67 L W+ D R+ DN A A + + + F P R F+ L + Sbjct: 67 LYWMCRDQRVQDNWAFLYAQRLALKQELPLRVCFCLVPAFLDAT---IRHYGFMLRGLRE 123 Query: 68 VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127 V K ++ I F + L S+ ++ V L + + + +++RL Sbjct: 124 VAKECAELDIPFHVL----LGCPKDVLPSFVVEHGVGGLVTDFCPLRVPRQWVEEVKERL 179 Query: 128 QHRVICKSFDDSVLLPPG-SILNHALQMYKVYTPFRKALIQNLVQADLR-SLPVPAIRLT 185 V D ++P + + L + L + P P Sbjct: 180 PEDVPFAQVDAHNIVPCWVASPKQEYSARTIRAKIHSQLPEFLTEFPPVIRHPHPPPNPP 239 Query: 186 GPVTPSNIPRFFDYPFQAIDPMF-PIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244 P+ + + G L +L+ F E++ + QR+ P S Sbjct: 240 EPIAWDACYSSLQVDRTVTEVAWATPGTAAGLAMLQSFITERLKSFGSQRNDPNKAALSN 299 Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304 LSP+ G +S ++ +++ + + E + + Y SV Sbjct: 300 LSPWFHFGQVSTQRAILEVQKHRRVYKESVDAFVEEAVVRRELAENFCYYNENYDSVRGA 359 Query: 305 KPFIPWTEKIEWNKDS---HLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASF- 360 + T K+ + L +Q T P+ +AA Q+ G MH LRM A Sbjct: 360 YDWAQSTLKLHAKDKRPFLYKLPQLEQATTHDPLWNAAQLQMVREGKMHGFLRMYWAKKI 419 Query: 361 --LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDS-------VPYFRIFNP 411 + + LDG + G W+ +D R N Sbjct: 420 LEWTRSPEEALQFAIYLNDRYELDGMDPNGYVGCLWSICGIHDQGWKERDVFGKIRYMNY 479 Query: 412 TIQGKRFDPQGTFIRHW 428 ++FD F R + Sbjct: 480 AGCKRKFDVD-QFERRY 495 >gi|312881041|ref|ZP_07740841.1| Deoxyribodipyrimidine photo-lyase type II [Aminomonas paucivorans DSM 12260] gi|310784332|gb|EFQ24730.1| Deoxyribodipyrimidine photo-lyase type II [Aminomonas paucivorans DSM 12260] Length = 464 Score = 139 bits (350), Expect = 1e-30, Method: Composition-based stats. Identities = 82/449 (18%), Positives = 141/449 (31%), Gaps = 38/449 (8%) Query: 2 KATTAMSVHLVWLRNDLRITDNKALYAACHN---SDAKVIAVFIATPEQWRQHGISARQS 58 +A L W+ + R D+ L AA + +F +P R Sbjct: 23 RAPRREGPVLYWMGREQRARDHWGLAAAQELAAERRVPLACIFTLSPTFLGAPL---RAY 79 Query: 59 HFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVR 118 F+ L + + L+ + I + +++ + + + VT ++ VR Sbjct: 80 AFLLRGLRETARELAARDIPLFLLRGDPPEEAARFAIRHRVALTVT------DFDPLRVR 133 Query: 119 RDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLP 178 R + D ++P + + L+ + L Sbjct: 134 RGWTEAFLERTEGTALEVDARNVVPCRFVSPKREWSAATLRRKLRPLLDRFLPFLPPPLE 193 Query: 179 VPAIRLTGPVTPSN--IPRFFDYPFQAI-DPMFPIGEQNALHILRKFCKEKVYYYVEQRD 235 + T PS + F+ + + P G L F +E + Y R+ Sbjct: 194 THPVPWTDTPPPSWDPLDLLASGSFEGVPESPLPPGSAAGQARLEAFLREGLPRYARDRN 253 Query: 236 IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNEL-IWREFYRHL 294 P +G S LSPYL G +SP++ + P ++L EL + E + Sbjct: 254 DPLREGQSGLSPYLHFGQISPQRAAWEVLRA-----DAPPEDREAFLEELVVRGELAENF 308 Query: 295 MAFYPSVCMGKPFIPWTEKIEWNKDSHL------LQAWKQGYTGFPIIDAAMRQLNTIGW 348 P + F W K S L+ ++G T P+ +AA R+L G Sbjct: 309 CLHTPGYDTVEAFPDWARKTLAAHASDRRPALYSLRELEEGRTHDPLWNAAQRELVLTGR 368 Query: 349 MHNRLRMITASFLVKD---LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSV-- 403 M LRM L++ R G LDG G W +D Sbjct: 369 MPGYLRMYWGKKLLEWTPSPEEALRAGVALNDRYELDGRDPKGYAGLAWCLGGVHDRPWP 428 Query: 404 -----PYFRIFNPTIQGKRFDPQGTFIRH 427 R ++FD + + R Sbjct: 429 SRPVFGSVRSMTAAGMARKFDVEA-YCRR 456 >gi|194863692|ref|XP_001970566.1| GG23307 [Drosophila erecta] gi|190662433|gb|EDV59625.1| GG23307 [Drosophila erecta] Length = 554 Score = 139 bits (350), Expect = 1e-30, Method: Composition-based stats. Identities = 73/446 (16%), Positives = 148/446 (33%), Gaps = 32/446 (7%) Query: 5 TAMSVHLVWLRNDLRITDNKALYAACHNS---DAKVIAVFIATPEQWRQHGISARQSHFI 61 +++ + W+ D R+ DN AL A + + + VF P+ R F+ Sbjct: 112 SSLGGVVYWMSRDGRVQDNWALLFAQRLAFKLELPLSVVFCLVPKFLNAT---IRHYKFM 168 Query: 62 YASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDK 121 L +V++ I F ++E L + + + + + + R Sbjct: 169 MGGLQEVEQQCRALDIPFHLL----MGPAVEKLPEFVKSKDIGAVVC--DFAPLRLPRQW 222 Query: 122 L--LEKRLQHRVICKSFDDSVLLPPGSILNHALQMYK-VYTPFRKALIQNLVQADL--RS 176 + + K L V D ++P + + + L + L + R Sbjct: 223 VEDVGKALPKSVPLVQVDAHNVVPLWVASDKQEYAARTIRNKINSKLGEFLSEFPPVVRH 282 Query: 177 LPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMF-PIGEQNALHILRKFCKEKVYYYVEQRD 235 + V S + + + G + A L +FC ++ ++ ++R+ Sbjct: 283 PYGTGCKNVNVVDWSAAYASLQCDMEVGEVQWATPGYKGACQQLYEFCSRRLRHFNDKRN 342 Query: 236 IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLM 295 P S LSP+L G +S ++C ++ + + + + Sbjct: 343 DPTADALSGLSPWLHFGHISAQRCALEVQRFRGQHKASADAFCEEAIVRRELADNFCFYN 402 Query: 296 AFYPSV--CMGKPFIPWTEKIEWNKDS-HLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNR 352 Y S+ + + +D + L+ ++ T + ++A QL G MH Sbjct: 403 EHYDSLKGLSTWAYQTLDAHRKDKRDPCYSLEELEKSLTYDDLWNSAQLQLVREGKMHGF 462 Query: 353 LRMITASFLVKDLLVDWRIGEE---YFMSQLLDGDLASNNGGWQWAASTGNDS------- 402 LRM A +++ R E LDG + G W+ +D Sbjct: 463 LRMYWAKKILEWTATPERALEYAILLNDKYSLDGRDPNGYVGCMWSIGGVHDMGWKERAI 522 Query: 403 VPYFRIFNPTIQGKRFDPQGTFIRHW 428 R N ++FD F+ + Sbjct: 523 FGKVRYMNYQGCRRKFDVNA-FVMRY 547 >gi|218530705|ref|YP_002421521.1| deoxyribodipyrimidine photo-lyase [Methylobacterium chloromethanicum CM4] gi|218523008|gb|ACK83593.1| Deoxyribodipyrimidine photo-lyase [Methylobacterium chloromethanicum CM4] Length = 467 Score = 138 bits (349), Expect = 1e-30, Method: Composition-based stats. Identities = 76/442 (17%), Positives = 145/442 (32%), Gaps = 42/442 (9%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGIS---ARQSHFIYASLLQ 67 L ++ +R+ N AL A ++ + + + +G AR F+ L Sbjct: 24 LYLMQQAMRVPFNPALELAIEEANRLKLPLLVCFGLLDGANGFPEANARHYAFLLQGLAD 83 Query: 68 VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127 +L ++GI F + + + +I+ L +R Y + R +E+ Sbjct: 84 AAAALEKRGIAFLLRRATPAEVAIDL------SADAALLVLDRGYLAIQKRWYGEIEREA 137 Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTP-FRKALIQNLVQADLRSLPVPAIRLTG 186 Q R++ + V++P ++ + P RK L + ++ PA L Sbjct: 138 QCRIV--QVEGDVVVPLETVSTKHEYAARTLRPKLRKLWDDYLEPVEPLTVDHPAEGLIQ 195 Query: 187 PVTPSNIPRFFDYPFQAIDPM-----------FPIGEQNALHILRKFCKEKVYYYVEQRD 235 + + D P + + + F G A L++F + Y R+ Sbjct: 196 RLKLKDGLDVSD-PEKLLAKLTLDTTVGPVKRFRGGYTEAAGHLKRFLEHAFAGYGAGRN 254 Query: 236 IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWL-------NELIWR 288 P S +SPYL G +SP + ++ + + N + Sbjct: 255 KPEAGAASHMSPYLHFGHISPVEIALAIRAAKDADDDDRSAYLEELIVRRELAMNHVFHT 314 Query: 289 EFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGW 348 + Y P + L +G T + AMR++ G+ Sbjct: 315 QGYDDYARAVPDWARKTLAEHADDPRPKLYSEEEL---AEGKTHDHYWNVAMREMRETGY 371 Query: 349 MHNRLRMITASFLVKDLLVDWRIGEEYFM---SQLLDGDLASNNGGWQWAASTGNDSVPY 405 MHN+LRM +++ LDG A++ W + Sbjct: 372 MHNQLRMYWGKKILEWSPSPEEAFARTLRLNNRYFLDGRDANSFTNVAWIFGLHDRPWQT 431 Query: 406 FRIFNPTIQG-----KRFDPQG 422 +IF ++FD +G Sbjct: 432 RQIFGSVRYQSENSLRKFDAKG 453 >gi|160335014|gb|ABX24915.1| cryptochrome 1 [Capsella bursa-pastoris] gi|160335192|gb|ABX25004.1| cryptochrome 1 [Capsella bursa-pastoris] Length = 161 Score = 138 bits (349), Expect = 1e-30, Method: Composition-based stats. Identities = 57/161 (35%), Positives = 90/161 (55%), Gaps = 1/161 (0%) Query: 267 FVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAW 326 + + +L + RE+ R++ +P +P + + W D + +AW Sbjct: 2 ANEGNEAGEESVNLFLKSIGLREYSRYISFNHP-YSHERPLLGHLKFFPWAVDENYFKAW 60 Query: 327 KQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLA 386 +QG TG+P++DA MR+L GW+H+R+R++ +SF VK L + WR G +YF LLD DL Sbjct: 61 RQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLE 120 Query: 387 SNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRH 427 S+ GWQ+ T DS + RI NP +G +FDP G ++R Sbjct: 121 SDALGWQYITGTLPDSREFDRIDNPQFEGYKFDPNGEYVRR 161 >gi|17230458|ref|NP_487006.1| hypothetical protein alr2966 [Nostoc sp. PCC 7120] gi|17132060|dbj|BAB74665.1| alr2966 [Nostoc sp. PCC 7120] Length = 278 Score = 138 bits (348), Expect = 2e-30, Method: Composition-based stats. Identities = 62/208 (29%), Positives = 95/208 (45%), Gaps = 9/208 (4%) Query: 209 PIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFV 268 G Q A L+ K Y + R+ ++LSPY+ GVLS + N + + Sbjct: 33 KGGRQAAQKALQ---KVNPATYAKTRNFLTGD-VTRLSPYIRYGVLSLGEIRNYVLDN-- 86 Query: 269 DLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQ 328 +K A +NEL WR++++ L + T S L K+ Sbjct: 87 ---VKHPDDAKKLINELGWRDYWQRLYIKLGNGIWEDQEEYKTGYTPAEYASDLAADIKE 143 Query: 329 GYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASN 388 G TG ID+ R+L G++HN +RM A+++V + W+ G ++F+ LLDGD ASN Sbjct: 144 GKTGLVCIDSFSRELQETGYLHNHMRMWLAAYIVHWRRIRWQEGAKWFLEHLLDGDPASN 203 Query: 389 NGGWQWAASTGNDSVPYFRIFNPTIQGK 416 N WQW AST + +F N + Sbjct: 204 NMSWQWVASTFSQKPYFFNRENLERYTQ 231 >gi|253995627|ref|YP_003047691.1| DNA photolyase FAD-binding [Methylotenera mobilis JLW8] gi|253982306|gb|ACT47164.1| DNA photolyase FAD-binding [Methylotenera mobilis JLW8] Length = 407 Score = 138 bits (347), Expect = 3e-30, Method: Composition-based stats. Identities = 67/204 (32%), Positives = 96/204 (47%), Gaps = 17/204 (8%) Query: 208 FPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEF 267 + G AL L Y R+ + LSPYL G L+ + ++ +K++F Sbjct: 36 WSGGRTGALRKLHA---VDAVQYGRNRNFING-AVTHLSPYLRHGCLNLNEVFSFVKQKF 91 Query: 268 VDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQ-AW 326 S L EL WR+F+R + + G E+ + N D L + Sbjct: 92 -------GLQGESLLMELAWRDFWRQVWFY-----EGNAIFSEMEQPKVNLDYQPLSVSV 139 Query: 327 KQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLA 386 KQ TG P +D +++L G+MHN RM AS++V L VDWR ++F + LLDGD A Sbjct: 140 KQANTGLPCMDGFIKELLDTGYMHNHARMWFASYVVHHLKVDWREAADWFEAHLLDGDFA 199 Query: 387 SNNGGWQWAASTGNDSVPYFRIFN 410 SN+ WQW AST + YF N Sbjct: 200 SNHLSWQWIASTFSSKPYYFNKEN 223 >gi|311232455|gb|ADP85309.1| DNA photolyase FAD-binding protein [Desulfovibrio vulgaris RCH1] Length = 478 Score = 137 bits (346), Expect = 3e-30, Method: Composition-based stats. Identities = 74/452 (16%), Positives = 133/452 (29%), Gaps = 46/452 (10%) Query: 8 SVHLVWLRNDLRITDNKALYAA---CHNSDAKVIAVFIATPEQWRQHGISARQSHFIYAS 64 L W+ + R DN AL A + A + V+ +P + RQ HF+ Sbjct: 21 GPVLYWMHREHRAHDNWALVHAIGEAKAAGAPLAVVWCLSPRFL---DAAYRQFHFLLRG 77 Query: 65 LLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLE 124 + ++L + GI F Q D + + + + + + + Sbjct: 78 MRGTAETLREHGIPFFLLQG----DPADEVPRFAATHGTGLVVTDFDVLRLKRAWLGQVR 133 Query: 125 KRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLP------ 178 + L D ++P + + P L+ + Sbjct: 134 EALAC--PLHEVDGRNVVPCRMASDKREYAARTLRPKIHRLLPEYLDPFPSLATEASGVA 191 Query: 179 -VPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPI------GEQNALHILRKFCKEKVYYYV 231 A P +P P GE+ A L F +++ Y Sbjct: 192 AWKAPVPDAMAAPDWDALLAAHPADRSVPALTGPDAPVPGEEGARRTLETFLTSRIHRYE 251 Query: 232 EQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFY 291 + R+ P S LSPYL G+++ ++ R+ S + + + Sbjct: 252 K-RNDPNADAVSGLSPYLHFGMMAAQRVVQRVTASTAGSADARASFIEELVVRRELADNF 310 Query: 292 R------HLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNT 345 + +P+ G + D L ++ T P+ +A QL Sbjct: 311 CLHTPDYDAVTCFPAWAQGTLDRHRDDPRPHLYDEAAL---EKARTADPLWNAGQTQLMR 367 Query: 346 IGWMHNRLRMITASFLVKD---LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDS 402 G +H +RM A L+ RI LDG ++ G W+ +D Sbjct: 368 CGVIHGYMRMYWAKQLLLWTPTPEEAMRIAVRQNDRWALDGRDSNGYAGIAWSLGGVHDR 427 Query: 403 -------VPYFRIFNPTIQGKRFDPQGTFIRH 427 R +FD +I Sbjct: 428 PWGERPVQGTIRCMTYNGARGKFDV-AAYIAR 458 >gi|94971523|ref|YP_593571.1| deoxyribodipyrimidine photo-lyase type II [Candidatus Koribacter versatilis Ellin345] gi|94553573|gb|ABF43497.1| Deoxyribodipyrimidine photo-lyase type II [Candidatus Koribacter versatilis Ellin345] Length = 446 Score = 137 bits (346), Expect = 3e-30, Method: Composition-based stats. Identities = 87/439 (19%), Positives = 152/439 (34%), Gaps = 36/439 (8%) Query: 12 VWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQKS 71 W++ R DN AL A ++A + I + R F+ + + + Sbjct: 2 YWMQRAQRAFDNPALDVAVQAANALKLPCVIFFAPVPFYPHANLRHYAFLQQGIPDIAEM 61 Query: 72 LSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHRV 131 ++ I F + L +C + + L + + E+R + + + + RV Sbjct: 62 AEERDIGFVLRRFPEHS-----LIKFCDEVKA-ALVIGDENPMRELREWREIAAK-KLRV 114 Query: 132 ICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPS 191 + D V++P + + + + LV + V G Sbjct: 115 PLWTVDADVIVPSKLLGKEQYAARIIRPRLKAHFKELLVPCENPRAHVKWHAARGLQQLD 174 Query: 192 NIPRFFDYPFQAID------PMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245 ID F G + AL +L +F K + Y E+ + GT++L Sbjct: 175 WRGTEDITEGWEIDRSVKPVDSFHGGTREALRLLDEFVKHGLTRYPERHNQADENGTARL 234 Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELI-WREFYRHLMAFYPSVCMG 304 SPYL G + P +++ V P+ +L+++I WRE +++ F P Sbjct: 235 SPYLHFGHIGPHTVALAVEKSKV-----PREAKDDFLDQVITWRELAINMVHFNPLYDTL 289 Query: 305 KPFIPWTEKI--EWNKDS----HLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITA 358 + W K E KD + + + T + +AA Q+ GWMHN +RM A Sbjct: 290 ECGENWAHKTLGEHAKDPRPIQYTPKQLEAAETYDDLWNAAQLQMVHAGWMHNYMRMYWA 349 Query: 359 SF---LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSV-------PYFRI 408 K V + LDG + G WA D R Sbjct: 350 KKILEWSKSPQVAYNTAVYLNDKYFLDGRDPNGYAGIAWAIVGKFDRPWFPRPIFGTIRY 409 Query: 409 FNPTIQGKRFDPQGTFIRH 427 + K+FD + +I Sbjct: 410 MARSGAEKKFDAE-KYIAQ 427 >gi|195474508|ref|XP_002089533.1| GE19152 [Drosophila yakuba] gi|194175634|gb|EDW89245.1| GE19152 [Drosophila yakuba] Length = 535 Score = 137 bits (346), Expect = 3e-30, Method: Composition-based stats. Identities = 72/446 (16%), Positives = 146/446 (32%), Gaps = 32/446 (7%) Query: 5 TAMSVHLVWLRNDLRITDNKALYAACHNS---DAKVIAVFIATPEQWRQHGISARQSHFI 61 +++ + W+ D R+ DN AL A + + + VF P+ R F+ Sbjct: 92 SSLGGVVYWMSRDGRVQDNWALLFAQRLAFKLELPLSVVFCLVPKFLNAT---IRHYKFM 148 Query: 62 YASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD- 120 L +V++ I F ++E L + + + + + + R Sbjct: 149 MGGLQEVEQQCRALDIPFHLL----MGPAVEKLPEFVKSKDIGAVIC--DFAPLRLPRQW 202 Query: 121 -KLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYK-VYTPFRKALIQNLVQADL--RS 176 + + K L V D ++P + + + L + L + R Sbjct: 203 VENVSKALPKSVPMVQVDAHNVVPLWVASDKQEYAARTIRNKINSKLGEFLSEFPPVVRH 262 Query: 177 LPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMF-PIGEQNALHILRKFCKEKVYYYVEQRD 235 + V + + + G + A L +FC ++ ++ ++R+ Sbjct: 263 PFGTGCKNVNAVDWLAAYASLQCDMEVEEVQWAKPGYKAACQQLYEFCSRRLRHFNDKRN 322 Query: 236 IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLM 295 P S LSP+L G +S ++C ++ S + + + Sbjct: 323 DPTADALSGLSPWLHFGHISAQRCALEVQRFRGQYKASADSFCEEAIVRRELADNFCFYN 382 Query: 296 AFYPSV--CMGKPFIPWTEKIEWNKDS-HLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNR 352 Y S+ + + +D + L+ ++ T + ++A QL G MH Sbjct: 383 DQYDSLKGLSSWAYQTLDAHRKDKRDPCYRLEELEKSLTYDDLWNSAQLQLVREGKMHGF 442 Query: 353 LRMITASFLVKDLLVDWRIGEE---YFMSQLLDGDLASNNGGWQWAASTGNDS------- 402 LRM A +++ E LDG + G W+ +D Sbjct: 443 LRMYWAKKILEWTATPEEALEYAILLNDKYSLDGRDPNGYVGCMWSIGGVHDMGWKERAI 502 Query: 403 VPYFRIFNPTIQGKRFDPQGTFIRHW 428 R N ++FD F+ + Sbjct: 503 FGKVRYMNYQGCKRKFDVNA-FVMRY 527 >gi|297849606|ref|XP_002892684.1| hypothetical protein ARALYDRAFT_471385 [Arabidopsis lyrata subsp. lyrata] gi|297338526|gb|EFH68943.1| hypothetical protein ARALYDRAFT_471385 [Arabidopsis lyrata subsp. lyrata] Length = 496 Score = 137 bits (346), Expect = 3e-30, Method: Composition-based stats. Identities = 83/455 (18%), Positives = 147/455 (32%), Gaps = 43/455 (9%) Query: 2 KATTAMSVHLVWLRNDLRITDNKALYAA---CHNSDAKVIAVFIATPEQWRQHGISARQS 58 + + + W+ D R+ DN AL A + ++A V VF + G ARQ Sbjct: 22 PSDQTVGPVVYWMFRDQRLNDNWALIHAVDLANRTNAPVAVVFNLFDQFL---GAKARQL 78 Query: 59 HFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVR 118 F+ L Q+ + I F Q D+ E + + + + L + Sbjct: 79 GFMLKGLRQLHHQIDSLQIPFFLLQ----GDAKETIPKFIAECGASHLVTDFSPLREIRS 134 Query: 119 RDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALI-QNLVQADLRSL 177 + KR + D ++P + + L+ L++ L Sbjct: 135 CKDEVVKRTSDSLAIHEVDAHNIVPMWAASGKLEYSARTIRGKINKLLPDYLIEFPKLEL 194 Query: 178 PVPAIRLTGPVTPSNIPRFFD----YPFQAIDPMFP-IGEQNALHIL----RKFCKEKVY 228 P + D + + + GE + +L F +++ Sbjct: 195 PKKKWTGMMDKKMVDWDSLIDKVVREGAEVPEIEWCVPGEDAGMEVLMGKKDGFLTKRLK 254 Query: 229 YYVEQRDIPAIQ-GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELI- 286 Y R+ P S LSPYL G +S ++C + + ++L ELI Sbjct: 255 NYSADRNNPVKPKALSGLSPYLHFGQISAQRCALEAR----KVRNTSPQAVDTFLEELIV 310 Query: 287 WREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHL------LQAWKQGYTGFPIIDAAM 340 RE + + P K W K + S L+ ++G T P+ + + Sbjct: 311 RRELSDNFCYYQPHYDSLKGAWEWARKSLMDHASDKREHIYSLEQLEKGQTADPLWNGSQ 370 Query: 341 RQLNTIGWMHNRLRMITASF---LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAAS 397 ++ G MH +RM A K I +DG S G W+ Sbjct: 371 LEMVYQGKMHGFMRMYWAKKILEWTKGPEEALSISIYLNNKYEIDGRDPSGYVGCMWSIC 430 Query: 398 TGNDS-------VPYFRIFNPTIQGKRFDPQGTFI 425 +D R N ++F+ ++I Sbjct: 431 GVHDQGWKERPVFGKIRYMNYAGCKRKFNVD-SYI 464 >gi|153831247|ref|ZP_01983914.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae 623-39] gi|148873267|gb|EDL71402.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae 623-39] Length = 114 Score = 137 bits (346), Expect = 3e-30, Method: Composition-based stats. Identities = 66/115 (57%), Positives = 80/115 (69%), Gaps = 2/115 (1%) Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423 DL +DWR GE YFMS+L+DGD A+NNGGWQW ASTG D PYFRIFNP QG++FDP G Sbjct: 1 DLHIDWRWGERYFMSRLIDGDYAANNGGWQWCASTGCDGQPYFRIFNPVSQGEKFDPNGD 60 Query: 424 FIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478 FIR W+PEL +V + YIH P ++ N + YP +VDHK+ TL Y AK Sbjct: 61 FIRRWVPELRSVSSAYIHQPWTYPAVNSVL--YPARLVDHKQEREVTLRLYKTAK 113 >gi|120603889|ref|YP_968289.1| deoxyribodipyrimidine photo-lyase [Desulfovibrio vulgaris DP4] gi|120564118|gb|ABM29862.1| Deoxyribodipyrimidine photo-lyase type II [Desulfovibrio vulgaris DP4] Length = 473 Score = 137 bits (346), Expect = 3e-30, Method: Composition-based stats. Identities = 75/452 (16%), Positives = 134/452 (29%), Gaps = 46/452 (10%) Query: 8 SVHLVWLRNDLRITDNKALYAA---CHNSDAKVIAVFIATPEQWRQHGISARQSHFIYAS 64 L W+ + R DN AL A + A + V+ +P + RQ HF+ Sbjct: 21 GPVLYWMHREHRAHDNWALLHAIGEAKAAGAPLAVVWCLSPRFL---DAAYRQFHFLLRG 77 Query: 65 LLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLE 124 + ++L + GI F Q D + + + + + + + Sbjct: 78 MRGTAETLREHGIPFFLLQG----DPADEVPRFAATHGTGLVVTDFDVLRLKRAWLGQVH 133 Query: 125 KRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLP------ 178 + L D ++P + + P L+ + Sbjct: 134 EALAC--PLHEVDGRNVVPCRMASDKREYAARTLRPKIHRLLPEYLDPFPSLATEASGVA 191 Query: 179 -VPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPI------GEQNALHILRKFCKEKVYYYV 231 A P +P P GE+ A L F +++ Y Sbjct: 192 AWKAPVPDAMAAPDWDALLAAHPADRSVPALTGPDAPVPGEEGARRTLETFLTSRIHRYE 251 Query: 232 EQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFY 291 + R+ P S LSPYL G+++ ++ R+ S + + + Sbjct: 252 K-RNDPNADAVSGLSPYLHFGMMAAQRVVQRVTASTAGSADARASFIEELVVRRELADNF 310 Query: 292 R------HLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNT 345 + +P+ G + D L ++ T P+ +AA QL Sbjct: 311 CLHTPDYDAVTCFPAWAQGTLDRHRDDPRPHLYDEAAL---EKARTADPLWNAAQTQLMR 367 Query: 346 IGWMHNRLRMITASFLVKD---LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDS 402 G +H +RM A L+ RI LDG ++ G W+ +D Sbjct: 368 CGVIHGYMRMYWAKQLLLWTPTPEEAMRIAVRQNDRWALDGRDSNGYAGIAWSLGGVHDR 427 Query: 403 -------VPYFRIFNPTIQGKRFDPQGTFIRH 427 R +FD +I Sbjct: 428 PWGERPVQGTIRCMTYNGARGKFDV-AAYIAR 458 >gi|163851953|ref|YP_001639996.1| deoxyribodipyrimidine photo-lyase [Methylobacterium extorquens PA1] gi|163663558|gb|ABY30925.1| Deoxyribodipyrimidine photo-lyase [Methylobacterium extorquens PA1] Length = 467 Score = 137 bits (346), Expect = 3e-30, Method: Composition-based stats. Identities = 78/450 (17%), Positives = 145/450 (32%), Gaps = 40/450 (8%) Query: 2 KATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGIS---ARQS 58 K L ++ +R+ N AL A ++ + + + +G AR Sbjct: 15 KPREGAGYVLYLMQQAMRVPFNPALELAIEEANRLKLPLLVCFGLLDGANGFPEANARHY 74 Query: 59 HFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVR 118 F+ L +L ++GI F + + + +I+ L +R Y + R Sbjct: 75 AFLLQGLADAAAALEKRGIAFLLRRATPAEVAIDL------SADAALLVLDRGYLAIQKR 128 Query: 119 RDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTP-FRKALIQNLVQADLRSL 177 +E+ Q R++ + V++P + + P RK L + R++ Sbjct: 129 WYGEIEREAQCRIV--QVEGDVVVPLETTSTKHEYAARTLRPKLRKLWDDYLDPVEPRTV 186 Query: 178 PVPA--------IRLTGPVTPSNIPRFFDYPFQAIDPM--FPIGEQNALHILRKFCKEKV 227 PA +R V+ + P+ F G A L++F + Sbjct: 187 DHPAEGLIQRLKLRDGLDVSDPEKLLATLTLDTTVGPVKRFRGGYTEAAGHLKRFLEHAF 246 Query: 228 YYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWL----- 282 Y R+ P S +SPYL G +SP + ++ + + Sbjct: 247 AGYGAGRNKPEAGAASHMSPYLHFGHISPVEIALAIRAAKDADDDDRSAYLEELIVRREL 306 Query: 283 --NELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAM 340 N + + Y P + L +G T + AM Sbjct: 307 AMNHVFHTQGYDDYARAVPDWARKTLAEHADDPRPKLYSEEEL---AEGKTHDHYWNVAM 363 Query: 341 RQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFM---SQLLDGDLASNNGGWQWAAS 397 R++ G+MHN+LRM +++ LDG A++ W Sbjct: 364 REMRETGYMHNQLRMYWGKKILEWSPSPEEAFARTLRLNNRYFLDGRDANSFTNVAWIFG 423 Query: 398 TGNDSVPYFRIFNPTIQG-----KRFDPQG 422 + +IF ++FD +G Sbjct: 424 LHDRPWQTRQIFGSVRYQSENSLRKFDAKG 453 >gi|189424834|ref|YP_001952011.1| deoxyribodipyrimidine photolyase [Geobacter lovleyi SZ] gi|189421093|gb|ACD95491.1| deoxyribodipyrimidine photolyase [Geobacter lovleyi SZ] Length = 447 Score = 137 bits (345), Expect = 4e-30, Method: Composition-based stats. Identities = 83/441 (18%), Positives = 144/441 (32%), Gaps = 33/441 (7%) Query: 8 SVHLVWLRNDLRITDNKALYAACH---NSDAKVIAVFIATPEQWRQHGISARQSHFIYAS 64 + W+ + R+ DN LY A A ++ VFI RQ F+ Sbjct: 18 GPVVYWMSREQRVADNWGLYHAQQLALERQAALLVVFILADGFLGATL---RQYGFMLQG 74 Query: 65 LLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLE 124 L QV + L I F + ++ + Q++ + ++ ++R Sbjct: 75 LEQVARKLDGLNIPFLLLEGEPRHSMLQ----FIAQEQTGCVVC--DFDPLRIKRQWFDG 128 Query: 125 KRLQHRVICKSFDDSVLLPPG-SILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIR 183 V D ++P + + Y + R+ L + LV A + Sbjct: 129 VAAAATVAVLEVDGHNIVPCRIASVKREFGAYTLRPKLRRVLPEFLVSIPQVVQHPFAWK 188 Query: 184 LTGPVTPSNIPRFFDYPFQAID--PMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQG 241 T + + + P + P F GEQ A L F + + Y +R+ P + G Sbjct: 189 KTVAIPDTEQVQIRLKPDAGVGVVPGFRPGEQAAFEALADFIAQGLNGYASRRNDPTVHG 248 Query: 242 TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSV 301 S LSP+L G LSP++ + + ++ EL + + A Y Sbjct: 249 QSGLSPWLHFGHLSPQRIALAVATQGDSEDVEAMLEELIVRREL--SDNFCLYCASY-DT 305 Query: 302 CMGKPFIPWTEKIEWNKDSHLLQAWK----QGYTGFPIIDAAMRQLNTIGWMHNRLRMIT 357 P + D + Q T + +AA ++ G MH LRM Sbjct: 306 LDAAPDWAHRTLEKHRHDPRRFCYTQHEFEQAATHDLLWNAAQTEMLETGKMHGYLRMYW 365 Query: 358 ASFLVKDLLVDWRIGE---EYFMSQLLDGDLASNNGGWQWAASTGNDSV-------PYFR 407 A +++ LDG + G W+ +D R Sbjct: 366 AKKILEWSESPEEAISTAIYLNDRYSLDGRDPNGYAGIAWSICGVHDRAWGERPVFGSIR 425 Query: 408 IFNPTIQGKRFDPQGTFIRHW 428 + ++F +IRHW Sbjct: 426 FMSYDGCKRKFKVD-EYIRHW 445 >gi|51859619|gb|AAU11091.1| class-II photolyase [Antonospora locustae] Length = 528 Score = 137 bits (345), Expect = 4e-30, Method: Composition-based stats. Identities = 83/439 (18%), Positives = 153/439 (34%), Gaps = 31/439 (7%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 + W+ D R+ DN AL A + + +FI R + RQ F+ A L +V+ Sbjct: 98 VYWMSRDQRVQDNWALLCAQGIAVRHGLPLFICFCLVPRFLDATTRQFRFMLAGLREVET 157 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDK---LLEKRL 127 Q GI F + S + E L + ++ + + V R+ L E+ Sbjct: 158 EALQLGIAFHVLKGS----APEALPRFVEHHKIGCVVA--DFNPLRVVREWCSLLCERLR 211 Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187 RV D ++P + + + P + ++L PV ++GP Sbjct: 212 GMRVSVVQVDAHNIVPAWVVSDKQEAGARTMRP---KIHRHLPAFLTEYPPVAVHPVSGP 268 Query: 188 VTPSNIPRFFDYPFQAID-----PMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGT 242 + + +A G + A +L FC E+++ Y + R+ PA G Sbjct: 269 ASVRVDWAALEASVRADTGVGDCSWIRSGTRAAFEVLDVFCSERLHAYADVRNDPARDGL 328 Query: 243 SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVC 302 S +SPY G ++ ++ + + + + + Y SV Sbjct: 329 SNMSPYFHFGQIAVQRAVLVVCSFRRTHGVSVDVFVEEAVVRRELADNFCLHNRNYDSVE 388 Query: 303 MGKPFIPWT---EKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITAS 359 + T + + + ++ L+ + T + +AA Q+ G MH +RM A Sbjct: 389 GASSWARGTLDAHRADRREHTYTLEQLEHAQTHDELWNAAQTQMTRDGKMHGFMRMYWAK 448 Query: 360 F---LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSV-------PYFRIF 409 R LDG + G W+ +D R Sbjct: 449 KILEWSVSPEEALRHAIYLNDRYELDGRDPNGYVGCMWSICGVHDRAWAERPVFGKVRYM 508 Query: 410 NPTIQGKRFDPQGTFIRHW 428 + + ++FD G +IR + Sbjct: 509 SYSGCLRKFDV-GCYIRRY 526 >gi|46578529|ref|YP_009337.1| deoxyribodipyrimidine photolyase [Desulfovibrio vulgaris str. Hildenborough] gi|46447940|gb|AAS94596.1| deoxyribodipyrimidine photolyase, putative [Desulfovibrio vulgaris str. Hildenborough] Length = 474 Score = 137 bits (345), Expect = 4e-30, Method: Composition-based stats. Identities = 74/452 (16%), Positives = 133/452 (29%), Gaps = 46/452 (10%) Query: 8 SVHLVWLRNDLRITDNKALYAA---CHNSDAKVIAVFIATPEQWRQHGISARQSHFIYAS 64 L W+ + R DN AL A + A + V+ +P + RQ HF+ Sbjct: 17 GPVLYWMHREHRAHDNWALVHAIGEAKAAGAPLAVVWCLSPRFL---DAAYRQFHFLLRG 73 Query: 65 LLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLE 124 + ++L + GI F Q D + + + + + + + Sbjct: 74 MRGTAETLREHGIPFFLLQG----DPADEVPRFAATHGTGLVVTDFDVLRLKRAWLGQVR 129 Query: 125 KRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLP------ 178 + L D ++P + + P L+ + Sbjct: 130 EALAC--PLHEVDGRNVVPCRMASDKREYAARTLRPKIHRLLPEYLDPFPSLATEASGVA 187 Query: 179 -VPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPI------GEQNALHILRKFCKEKVYYYV 231 A P +P P GE+ A L F +++ Y Sbjct: 188 AWKAPVPDAMAAPDWDALLAAHPADRSVPALTGPDAPVPGEEGARRTLETFLTSRIHRYE 247 Query: 232 EQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFY 291 + R+ P S LSPYL G+++ ++ R+ S + + + Sbjct: 248 K-RNDPNADAVSGLSPYLHFGMMAAQRVVQRVTASTAGSADARASFIEELVVRRELADNF 306 Query: 292 R------HLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNT 345 + +P+ G + D L ++ T P+ +A QL Sbjct: 307 CLHTPDYDAVTCFPAWAQGTLDRHRDDPRPHLYDEAAL---EKARTADPLWNAGQTQLMR 363 Query: 346 IGWMHNRLRMITASFLVKD---LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDS 402 G +H +RM A L+ RI LDG ++ G W+ +D Sbjct: 364 CGVIHGYMRMYWAKQLLLWTPTPEEAMRIAVRQNDRWALDGRDSNGYAGIAWSLGGVHDR 423 Query: 403 -------VPYFRIFNPTIQGKRFDPQGTFIRH 427 R +FD +I Sbjct: 424 PWGERPVQGTIRCMTYNGARGKFDV-AAYIAR 454 >gi|326925994|ref|XP_003209191.1| PREDICTED: deoxyribodipyrimidine photo-lyase-like [Meleagris gallopavo] Length = 503 Score = 137 bits (345), Expect = 4e-30, Method: Composition-based stats. Identities = 73/430 (16%), Positives = 134/430 (31%), Gaps = 26/430 (6%) Query: 11 LVWLRNDLRITDNKALYAACHNS---DAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67 L W+ D R+ DN A A + + + F P R F+ L + Sbjct: 71 LYWMCRDQRVQDNWAFLYAQRLALKQELPLRVCFCLVPTFLDAT---IRHYGFMLRGLRE 127 Query: 68 VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127 V + ++ I F + L S+ ++ V L + + + +++RL Sbjct: 128 VAEECAELDIPFHLL----LGCPKDVLPSFVVEHSVGGLVTDFCPLRVPRQWVEEVKERL 183 Query: 128 QHRVICKSFDDSVLLPPG-SILNHALQMYKVYTPFRKALIQNLVQADLR-SLPVPAIRLT 185 V D ++P + + L + L + P P Sbjct: 184 PEDVPFAQVDAHNIVPCWVTSPKQEYSARTIRAKIHSKLPEFLTEFPPVIRHPHPPPNPP 243 Query: 186 GPVTPSNIPRFFDYPFQAIDPMF-PIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244 P+ + + G L +L+ F +++ + QR+ P S Sbjct: 244 EPIAWDACYSSLQVDHTVTEVAWATPGTAAGLAMLQSFITKRLKSFGSQRNDPNKAALSN 303 Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304 LSP+ G +S ++ +++ + + E + + Y SV Sbjct: 304 LSPWFHFGQVSTQRAILEVQKHRCAYKESVDAFVEEAVVRRELAENFCYYNENYDSVRGA 363 Query: 305 KPFIPWTEKIEWNKDS---HLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASF- 360 + T K+ + L +Q T P+ +AA Q+ G MH LRM A Sbjct: 364 YDWAQSTLKLHAKDKRPFLYELPQLEQATTHDPLWNAAQLQMVQEGKMHGFLRMYWAKKI 423 Query: 361 --LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDS-------VPYFRIFNP 411 + + LDG + G W+ +D R N Sbjct: 424 LEWTRSPEEALQFAIYLNDRYELDGMDPNGYVGCLWSICGIHDQGWKERDVFGKIRYMNY 483 Query: 412 TIQGKRFDPQ 421 ++FD Sbjct: 484 AGCKRKFDVD 493 >gi|145345173|ref|XP_001417095.1| predicted protein [Ostreococcus lucimarinus CCE9901] gi|144577321|gb|ABO95388.1| predicted protein [Ostreococcus lucimarinus CCE9901] Length = 506 Score = 137 bits (344), Expect = 5e-30, Method: Composition-based stats. Identities = 83/419 (19%), Positives = 143/419 (34%), Gaps = 39/419 (9%) Query: 8 SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67 + + WL D R+ DN AL AC + A V IA + G ARQ F+ L + Sbjct: 27 APVVYWLSRDQRVRDNWALLRACDVARANDAPVVIAFNLLTKFLGAGARQFGFMLRGLRE 86 Query: 68 VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127 ++ + K + F D+ +D+ + + + + ++ K L Sbjct: 87 LEGAAKAKNVTFAMTYG---DEPAIAIDALAKKIGAKTIVCDFSPLRDGLKWRKELAALC 143 Query: 128 QHR-VICKSFDDSVLLPPGSILNH--------ALQMYKVYTPFRKALIQNLVQADLRSLP 178 + R C+ D ++P + ++ K Y F + S P Sbjct: 144 EARSAHCEECDAHNVVPCWEASDKLEVGARTLRGRLAKRYPEFLHEFPEVPDDLPKYSGP 203 Query: 179 VPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPA 238 + + R P GE A +L F ++ Y ++ D Sbjct: 204 ALDAVKWDDIIAEALSRGQAVPEVTWAI---PGETAAHAVLDDFVNSRMKLYEKRNDPSK 260 Query: 239 IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNEL-IWREFYRHLMAF 297 Q S LSP+L G +S ++C K+ S+ EL + RE + + Sbjct: 261 PQALSGLSPWLHFGQISGQRCALEAKKAVGKASP---PAYESFFEELVVRRELSDNFCYY 317 Query: 298 YPSVCMGKPFIPWTEKIEWNKDS------------HLLQAWKQGYTGFPIIDAAMRQLNT 345 P + +K +W KD+ + L+ ++ T + +AA R+L Sbjct: 318 SPKYDQIEG-----QKYDWAKDTLRLHASDKRPYLYSLEELERAKTHDDLWNAAQRELRY 372 Query: 346 IGWMHNRLRMITASF---LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGND 401 G MH RM A + + + LDG S G W+ +D Sbjct: 373 GGKMHGFCRMYWAKKILEWTESPEQALKFAIYLNDTYSLDGRDPSGYVGCMWSIVGVHD 431 >gi|302780533|ref|XP_002972041.1| hypothetical protein SELMODRAFT_96351 [Selaginella moellendorffii] gi|300160340|gb|EFJ26958.1| hypothetical protein SELMODRAFT_96351 [Selaginella moellendorffii] Length = 510 Score = 137 bits (344), Expect = 5e-30, Method: Composition-based stats. Identities = 85/462 (18%), Positives = 148/462 (32%), Gaps = 45/462 (9%) Query: 5 TAMSVHLVWLRNDLRITDNKALYAACHNS---DAKVIAVFIATPEQWRQHGISARQSHFI 61 + + W+ D R DN AL A + D V VF AR F+ Sbjct: 58 SHSGPVVYWMSRDQRSRDNWALLYAAEQARKRDTPVAVVFNLVESFLEAK---ARHFGFL 114 Query: 62 YASLLQVQKSLSQKGI---VFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVR 118 L V+K+L + GI + + +E ++ L + L I Sbjct: 115 LRGLRVVEKNLEKLGIAFFLLRGRPEDTIPAFVEACNASILVLDFSPL------RIGRTW 168 Query: 119 RDKLLEKR-LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSL 177 R ++ + D ++P + + + + + Sbjct: 169 RTGVVSRLGADTTTAVHEVDAHNVVPVWIASDKLEYAARTIRLKIQRQLPEFLVDFPTLE 228 Query: 178 PVPAIRLTGPVTPSNIPRFFDYPFQAIDP-----MFPIGEQNALHILRKFCKEKVYYYVE 232 P + D +A D GE AL L F ++ Y Sbjct: 229 PFSKPWPGVAQEKIDWDSLIDEVLRAGDEVPEVDWCEPGEDIALERLAGFLSSRLQRYSA 288 Query: 233 QRDIPA-IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNEL-IWREF 290 +R+ P+ ++ S LSPY G LSP++C ++ S+L EL I RE Sbjct: 289 ERNDPSKLERLSDLSPYFHYGQLSPQRCAFEVR----KARKLHMQSVDSFLEELIIRREL 344 Query: 291 YRHLMAFYPSVCMGKPFIPWTEK--IEWNKDSHLLQAWKQ----GYTGFPIIDAAMRQLN 344 + + P+ + W +E D +Q G T + +A+ ++ Sbjct: 345 SDNFCYYQPNYDNIQGAWEWARNSLLEHANDKREHIYTRQQLEDGKTKDKLWNASQLEMV 404 Query: 345 TIGWMHNRLRMITASFLVKDLLVDWR--IGEEYF-MSQLLDGDLASNNGGWQWAASTGND 401 G MH +RM A +++ YF LDG + G W+ +D Sbjct: 405 HRGKMHGFMRMYWAKKILEWTESPEDALAIAIYFNDKYQLDGRDPNGYVGCMWSICGIHD 464 Query: 402 S-------VPYFRIFNPTIQGKRFDPQGT--FIRHWLPELNN 434 R N ++F+ G ++ + E+ Sbjct: 465 QGWKERPIFGKIRYMNYEGCKRKFNVDGYIMYVNKLVAEVKK 506 >gi|240139079|ref|YP_002963554.1| deoxyribodipyrimidine photolyase (DNA photolyase) [Methylobacterium extorquens AM1] gi|240009051|gb|ACS40277.1| deoxyribodipyrimidine photolyase (DNA photolyase) [Methylobacterium extorquens AM1] Length = 467 Score = 137 bits (344), Expect = 6e-30, Method: Composition-based stats. Identities = 78/451 (17%), Positives = 145/451 (32%), Gaps = 42/451 (9%) Query: 2 KATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGIS---ARQS 58 K L ++ +R+ N AL A ++ + + + +G AR Sbjct: 15 KPREGAGYVLYLMQQAMRVPFNPALELAIEEANRLKLPLLVCFGLLDGANGFPEANARHY 74 Query: 59 HFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVR 118 F+ L +L ++GI F + + + +I+ L +R Y + R Sbjct: 75 SFLLQGLADAAAALEKRGIAFLLRRATPAEIAIDL------SADAALLVLDRGYLAIQKR 128 Query: 119 RDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTP-FRKALIQNLVQADLRSL 177 +E+ Q R++ + V++P + + P RK L + R + Sbjct: 129 WYGEIEREAQCRIV--QVEGDVVVPLETASTKHEYAARTLRPKLRKLWDDYLEPVEPRQV 186 Query: 178 PVPAIRLTGPVTPSNIPRFFDYPFQAIDPM-----------FPIGEQNALHILRKFCKEK 226 PA L + + D P + + + F G A L++F + Sbjct: 187 DHPAEGLIKRLKLKDGLDASD-PEKLLAKLALNTTVGPVKRFRGGYTEAAGHLKRFLEHA 245 Query: 227 VYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWL---- 282 Y R+ P S +SPYL G +SP + ++ + + Sbjct: 246 FAGYGAGRNKPEAGAASHMSPYLHFGHISPVEIALAIRAAKDADDDDRSAYLEELIVRRE 305 Query: 283 ---NELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAA 339 N + + Y P + L +G T + A Sbjct: 306 LAMNHVFHTQGYDDYARAVPDWARKTLAEHADDPRPKLYSEEEL---AEGKTHDHYWNVA 362 Query: 340 MRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFM---SQLLDGDLASNNGGWQWAA 396 MR++ G+MHN+LRM +++ LDG A++ W Sbjct: 363 MREMRETGYMHNQLRMYWGKKILEWSPSPEEAFARTLRLNNRYFLDGRDANSFTNVAWIF 422 Query: 397 STGNDSVPYFRIFNPTIQG-----KRFDPQG 422 + +IF ++FD +G Sbjct: 423 GLHDRPWQTRQIFGSVRYQSENSLRKFDAKG 453 >gi|288573172|ref|ZP_06391529.1| Deoxyribodipyrimidine photo-lyase [Dethiosulfovibrio peptidovorans DSM 11002] gi|288568913|gb|EFC90470.1| Deoxyribodipyrimidine photo-lyase [Dethiosulfovibrio peptidovorans DSM 11002] Length = 448 Score = 136 bits (343), Expect = 6e-30, Method: Composition-based stats. Identities = 78/452 (17%), Positives = 146/452 (32%), Gaps = 44/452 (9%) Query: 2 KATTAMSVHLVWLRNDLRITDNKALYAA---CHNSDAKVIAVFIATPEQWRQHGISARQS 58 + + + W+ D R+ DN AL A ++ + VF + + R Sbjct: 18 EGSPGEGPVVYWMSRDQRVRDNWALLYAQDVALAANRPLEVVFCLSRDFIGAP---IRHY 74 Query: 59 HFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVR 118 F+ L + K LS+ + F+ + E L Y ++ L + ++ Sbjct: 75 DFMLRGLTETAKELSKLNVSFKI----PLGEPKEKLPLYAKKRDPAVLVTDFSPLRHQKG 130 Query: 119 RDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLP 178 + + + L + D ++P + + P Q + A Sbjct: 131 WIESVYEYLSCPID--QVDGHNVVPAWETSDKREYAARTIRPKLHRKFQEFLTAFPEMKK 188 Query: 179 VPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPA 238 +P PS D ++ P G LR F + Y R+ P Sbjct: 189 LPYEDRETDRVPSTEELRLDGSVLPVEGEIP-GSAAGEMRLRSFIARGLSGYDRDRNDPN 247 Query: 239 IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNE-LIWREFYRHLMAF 297 + GTS+LSPY+ G +S + + + G+ +++ E ++ RE + + Sbjct: 248 LDGTSRLSPYIHFGQISAQTVV-------REAFLADLPGSDAFVEEAMVRRELAENFCLY 300 Query: 298 YPSVCMGKPFIPW---------TEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGW 348 P + W ++K W L ++ T + +AA L G Sbjct: 301 EPLYDRYEALPEWGRKALDHHRSDKRPWLY---GLSELEEAGTHDELWNAAQLSLRRKGR 357 Query: 349 MHNRLRMITASFLVKDLLVDWRIGEEYF---MSQLLDGDLASNNGGWQWAASTGNDSV-- 403 +H LRM L+ LDG + G W +D Sbjct: 358 IHGYLRMYWGKMLLLWSPSPEEAFSRALYLNDRYALDGRDPNGYTGVAWCIGGLHDRPWP 417 Query: 404 -----PYFRIFNPTIQGKRFDPQGTFIRHWLP 430 R + ++FD + +I ++P Sbjct: 418 KRPVFGSVRSMALSGCARKFDVK-RYIASFVP 448 >gi|282901135|ref|ZP_06309066.1| deoxyribodipyrimidine photolyase-like protein [Cylindrospermopsis raciborskii CS-505] gi|281193967|gb|EFA68933.1| deoxyribodipyrimidine photolyase-like protein [Cylindrospermopsis raciborskii CS-505] Length = 264 Score = 136 bits (343), Expect = 7e-30, Method: Composition-based stats. Identities = 59/208 (28%), Positives = 96/208 (46%), Gaps = 9/208 (4%) Query: 209 PIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFV 268 P G + A+ L K Y + R+ ++LSPY+ GVLS R+ E++ Sbjct: 33 PGGRKAAVEQLE---KVNAVLYAKTRNYL-TGAVTRLSPYIRHGVLSLREV-----REYI 83 Query: 269 DLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQ 328 ++ +NEL WR++++ L T + L + ++ Sbjct: 84 LNTVENSEDGSKLINELGWRDYWQRLYMKLGKGIWENQEEYKTGYHRGDYSHTLPEDIRE 143 Query: 329 GYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASN 388 G TG ID+ ++L G++HN +RM AS+++ + W+ G ++F+ LLDGD ASN Sbjct: 144 GKTGMVCIDSFSQELRVTGYLHNHIRMWLASYIIHWRKIQWQAGAKWFLQHLLDGDPASN 203 Query: 389 NGGWQWAASTGNDSVPYFRIFNPTIQGK 416 N WQW AST + +F N K Sbjct: 204 NMSWQWVASTFSHKPYFFNRENLERYTK 231 >gi|213158207|ref|YP_002320258.1| deoxyribodipyrimidine photo-lyase [Acinetobacter baumannii AB0057] gi|213057367|gb|ACJ42269.1| deoxyribodipyrimidine photo-lyase [Acinetobacter baumannii AB0057] Length = 193 Score = 136 bits (343), Expect = 7e-30, Method: Composition-based stats. Identities = 51/182 (28%), Positives = 88/182 (48%), Gaps = 4/182 (2%) Query: 10 HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69 L+W R DLRI D+ AL+ A + + + I +PEQW+QH + + F L +Q Sbjct: 6 QLIWFRQDLRIHDHAALWHASQQGPS--LGLVILSPEQWKQHADAPIKISFYLRQLRTLQ 63 Query: 70 KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL-Q 128 K LS I + + ++ + + + ++ N + +NE++RDK ++ L + Sbjct: 64 KELSALHIPLVIQVIPYWKEIATFISDFSKKYNIENVYANIEIGVNELKRDKTVQDYLNR 123 Query: 129 HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADL-RSLPVPAIRLTGP 187 H F D + P SI N + Q Y+V++ F+KA L + L + PVP + P Sbjct: 124 HGKELFLFHDRTIFPLRSIRNQSQQPYQVFSAFKKACYTKLDTSGLSQCYPVPNKQNEVP 183 Query: 188 VT 189 + Sbjct: 184 LD 185 >gi|328953264|ref|YP_004370598.1| deoxyribodipyrimidine photolyase [Desulfobacca acetoxidans DSM 11109] gi|328453588|gb|AEB09417.1| deoxyribodipyrimidine photolyase [Desulfobacca acetoxidans DSM 11109] Length = 463 Score = 136 bits (342), Expect = 8e-30, Method: Composition-based stats. Identities = 85/431 (19%), Positives = 146/431 (33%), Gaps = 37/431 (8%) Query: 6 AMSVHLVWLRNDLRITDNKALYAACH---NSDAKVIAVFIATPEQWRQHGISARQSHFIY 62 + WL D R DN AL A H + A + VF P + RQ F+ Sbjct: 18 GGGPVVCWLSRDQRADDNWALLYAQHLALSRQAALAVVFNLVPHFLQATY---RQYDFML 74 Query: 63 ASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKL 122 L ++ ++L QK I F Q + + + Q R + ++ ++R Sbjct: 75 KGLEELTQNLGQKNIPFFLLQG----EPAATIPMFLAQSRAGAVVS--DFDPLRIKRQWK 128 Query: 123 LEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAI 182 + + + D ++P P L+ + + + RS+ + Sbjct: 129 DQVLPRLSIPFYEVDAHNIIPCWLASAKQEFGAYTLRPRIHRLLSDFL-TEPRSIEIHPF 187 Query: 183 RLTGPVTPSNIPR-----FFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIP 237 R V + D + P GE L F + + Y R+ P Sbjct: 188 RWPDSVPQIDWRSVLASAAMDRSVPPVSWCQP-GESAGRARLTSFIQLGLPRYHLSRNDP 246 Query: 238 AIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELI-WREFYRHLMA 296 +G S LSPYL G ++ ++ ++ + P ++L ELI RE + Sbjct: 247 IREGQSDLSPYLHFGQIAAQRVAWEVQRA-----VAPTEARQAFLEELIVRRELADNFCW 301 Query: 297 FYPSVCMGKPFIPWTE------KIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMH 350 P F W + + + + L+ ++ T P+ +AA ++ G MH Sbjct: 302 HNPDYDRFSGFPAWAQETLNKHRTDRRDYLYSLREFESARTHDPLWNAAQLEMLHRGKMH 361 Query: 351 NRLRMITASFLVKDLLVDWRIGEEYFM---SQLLDGDLASNNGGWQWAASTGNDSVPYFR 407 LRM A +++ E LDG + G W+ +D R Sbjct: 362 GYLRMYWAKKILEWTASPEEALEIALYLNNRYELDGRDPNGYAGVAWSIGGLHDRPWGER 421 Query: 408 IFNPTIQGKRF 418 P RF Sbjct: 422 ---PVFGKIRF 429 >gi|224124936|ref|XP_002329850.1| predicted protein [Populus trichocarpa] gi|222871087|gb|EEF08218.1| predicted protein [Populus trichocarpa] Length = 503 Score = 136 bits (342), Expect = 8e-30, Method: Composition-based stats. Identities = 86/471 (18%), Positives = 163/471 (34%), Gaps = 48/471 (10%) Query: 2 KATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFI 61 + + W+ D R+ DN AL A ++ + V +A + G ARQ F+ Sbjct: 27 RGQVGGGPVVYWMFRDQRLQDNWALIHAVDQANRSNVPVAVAFNLFDQFLGAKARQLGFM 86 Query: 62 YASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRR-- 119 L Q+Q + + Q ++ E + ++ + L + R Sbjct: 87 LRGLCQLQSHIEE---TLQIPFFLFLGEAEETIPAFLKDCGASLLVT--DFSPLRQFRTC 141 Query: 120 DKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPV 179 + KR+ V D ++P + + L+ + + D L + Sbjct: 142 QDEICKRVSDSVTIHEVDAHNVVPIW-VASEKLEYSARTLRGKINKLLPEYLIDFPMLQL 200 Query: 180 PAIRLTGPVTPS-NIPRFFD----YPFQAIDPMF-PIGEQNALHIL----RKFCKEKVYY 229 P + S + D + + + GE A+ +L F +++ Sbjct: 201 PKNKWVAATKQSIDWNDLIDNVLRKGAEVPEIKWCEPGEDAAMEVLMGSKDGFLTQRLKN 260 Query: 230 YVEQRDIPAIQ-GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELI-W 287 Y R+ P G S LSPYL G +S ++C + + A ++L ELI Sbjct: 261 YSTDRNNPLKPKGLSGLSPYLHFGQISAQRCALEAR----KVRNLSPQSADAFLEELIVR 316 Query: 288 REFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAW------KQGYTGFPIIDAAMR 341 RE + + P+ W K + S + ++ T P+ +A+ Sbjct: 317 RELADNFCFYQPNYDSIHGAWEWARKTLADHASDKREHIYSKEQLEKAQTADPLWNASQL 376 Query: 342 QLNTIGWMHNRLRM--ITASFLVKDLLVDWRIGEEYFM-------SQLLDGDLASNNGGW 392 ++ G MH +R + + + K +L R EE +DG G Sbjct: 377 EMVCHGKMHGFMRQKTLCSMYWAKKILEWTRGPEEALAISIYLNDKYEIDGRDPGGYVGC 436 Query: 393 QWAASTGNDS----VPYF---RIFNPTIQGKRFDPQG--TFIRHWLPELNN 434 W+ +D P F R N ++F+ G T+++ + ++ Sbjct: 437 MWSICGIHDQGWKERPIFGKIRYMNYAGCKRKFNVDGYITYVKRIVGDMKK 487 >gi|688103|gb|AAB32328.1| photorepair gene [Drosophila melanogaster] Length = 536 Score = 136 bits (342), Expect = 8e-30, Method: Composition-based stats. Identities = 76/450 (16%), Positives = 147/450 (32%), Gaps = 39/450 (8%) Query: 5 TAMSVHLVWLRNDLRITDNKALYAACHNS---DAKVIAVFIATPEQWRQHGISARQSHFI 61 +++ + W+ D R+ DN AL A + + + VF P+ R F+ Sbjct: 92 SSLGGVVYWMSRDGRVQDNWALLFAQRLALKLELPLTVVFCLVPKFLNAT---IRHYKFM 148 Query: 62 YASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDK 121 L +V++ I F S ++E L + + + + + + R Sbjct: 149 MGGLQEVEQQCRALDIPFHLLMGS----AVEKLPQFVKSKDIGAVVC--DFAPLRLPRQW 202 Query: 122 L--LEKRLQHRVICKSFDDSVLLPPGSILNHALQMYK-VYTPFRKALIQNLVQADL--RS 176 + + K L V D ++P + + + L + L + R Sbjct: 203 VEDVGKALPKSVPLVQVDAHNVVPLWVASDKQEYAARTIRNKINSKLGEYLSEFPPVVRH 262 Query: 177 LPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMF-PIGEQNALHILRKFCKEKVYYYVEQRD 235 + V S + + + G + A L +FC ++ ++ ++R+ Sbjct: 263 PHGTGCKNVNTVDWSAAYASLQCDMEVDEVQWAKPGYKAACQQLYEFCSRRLRHFNDKRN 322 Query: 236 IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNE-LIWREFYRHL 294 P S LSP+L G +S ++C ++ + K+ A ++ E ++ RE + Sbjct: 323 DPTADALSGLSPWLHFGHISAQRCALEVQRF---RGGQHKASADAFCEETIVRRELADNF 379 Query: 295 MAFYPSVCMGKPFIPWTEKI--EWNKDSHLLQAW----KQGYTGFPIIDAAMRQLNTIGW 348 + K W + KD ++ T + ++A QL G Sbjct: 380 CFYNEHYDSLKGLSSWAYQTLDAHRKDKRDPCYSLEELEKSLTYDDLWNSAQLQLVREGK 439 Query: 349 MHNRLRMITASF---LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDS--- 402 MH LRM LDG + G W+ +D Sbjct: 440 MHGFLRMYWPQKILEWTATPEQALEYAILLNDKYSLDGRDPNGYVGCMWSIGGVHDMGWK 499 Query: 403 ----VPYFRIFNPTIQGKRFDPQGTFIRHW 428 R N ++FD F+ + Sbjct: 500 ERAIFGKVRYMNYQGCRRKFDVNA-FVMRY 528 >gi|328784628|ref|XP_003250474.1| PREDICTED: deoxyribodipyrimidine photo-lyase [Apis mellifera] Length = 480 Score = 136 bits (342), Expect = 8e-30, Method: Composition-based stats. Identities = 77/438 (17%), Positives = 152/438 (34%), Gaps = 29/438 (6%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 L W+ D+RI DN AL A + + + I S R F+ L +++K Sbjct: 43 LYWMFRDIRIQDNWALLFAQKAALKNNVPLHICFCLISNFLNASIRYYKFLLKGLEEIEK 102 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130 + I F + ++++ Y + +T + ++ + D ++K L Sbjct: 103 ECKKLNINFHLLHGEPNINILKFIKIYNMGAIITDFY---PLKLPMLWIDN-VKKNLPKD 158 Query: 131 VICKSFDDSVLLPPGSILNHALQMYK-VYTPFRKALIQNLVQADLR-SLPVPAIRLTGPV 188 + D ++P + K + L + L + P Sbjct: 159 IPICQVDAHNIVPCWYASSKQEFAAKTIRNKINTKLEEFLTEFPPVIKHPYTTKEKFEKN 218 Query: 189 TPSNIPRFFDYPFQAIDPMF-PIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSP 247 + + + + G +N + L F + ++ Y ++R+ P S LSP Sbjct: 219 NWKIALQNVEVDKSVKEITWAKPGYENGIKELENFLQNRLKKYGDERNNPLSNAISNLSP 278 Query: 248 YLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNE-LIWREFYRHLMAFYPSVCMGKP 306 + G++S ++C +KE + L K S++ E +I +E + + + + Sbjct: 279 WFHFGMISVQRCILEIKE-YKKLY---KKSVESFMEEAIIRKELSDNFCFYNEKYDLIEG 334 Query: 307 FIPW------TEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASF 360 PW + + K + L + T + +A Q+ TIG MH LRM A Sbjct: 335 AYPWAIETLNKHRKDKRKYIYFLNHLENSETHDDLWNACQNQMVTIGKMHGFLRMYWAKK 394 Query: 361 ---LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDS-------VPYFRIFN 410 + + + +DG + G W+ +D R N Sbjct: 395 ILEWTETPEIALKWANYLNNKYSIDGCDPNGYVGCMWSICGVHDHGWPERDIFGKIRYMN 454 Query: 411 PTIQGKRFDPQGTFIRHW 428 ++F+ F+ W Sbjct: 455 YEGCKRKFN-IAEFVMKW 471 >gi|188996663|ref|YP_001930914.1| Deoxyribodipyrimidine photo-lyase [Sulfurihydrogenibium sp. YO3AOP1] gi|188931730|gb|ACD66360.1| Deoxyribodipyrimidine photo-lyase [Sulfurihydrogenibium sp. YO3AOP1] Length = 455 Score = 136 bits (342), Expect = 9e-30, Method: Composition-based stats. Identities = 83/455 (18%), Positives = 163/455 (35%), Gaps = 40/455 (8%) Query: 4 TTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYA 63 + + W+ + R N L A S+ + + P + +AR F+ Sbjct: 18 NQSGKYTIYWMSHSHRANFNHGLEYAIKLSNDYKKPLLVYFPITDKYKYSNARYYKFMLD 77 Query: 64 SLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLL 123 +L+ +KS+ ++GI F + + + + L ++ Y + + Sbjct: 78 GVLEAKKSIEERGIKFIIEKSDGIEQRVIEISK-----NAVALITDKAYLKYYRKLYSDI 132 Query: 124 EKRLQHRVICKSFDDSVLLPPG-SILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAI 182 K+L + + V +P + + + + L +++ + R + ++ Sbjct: 133 TKQLD--IPFYEVESDVCVPVEIASQKQEVYAFNIRKKIYDLLDSYILKLEPREPKIKSV 190 Query: 183 RLTGPVTPSNIPRFFDY------PFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDI 236 L + + + F G A L++F ++K++ Y E R Sbjct: 191 NLDFGIKELTLNSSLEILDILNIDKSVSLSPFIGGYSQAKRCLKEFIEKKLHKYKEYRSH 250 Query: 237 PAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELI-WREFYRHLM 295 P + S LSPYL G +SP + + E+ K S+ NELI WRE R+ Sbjct: 251 PELDYQSNLSPYLHFGQISPIEVALEILSEY-----KKDENVDSFFNELIAWRELARNFC 305 Query: 296 AFYPSVCMGKPFIPWTEKI--EWNKDS----HLLQAWKQGYTGFPIIDAAMRQLNTIGWM 349 + PS + W +K + D + L+ ++ T +AA +L G M Sbjct: 306 YYNPSYNHYEGIPDWAKKTLEDHKNDKRDYVYTLEEFENAKTHDEYWNAAQLELLKSGKM 365 Query: 350 HNRLRMITASF---LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSV--- 403 HN +RM +D + I LDG + G W T + Sbjct: 366 HNFMRMYWCKKIIEWTQDPKHAFDIACYLNDKYELDGRDPNGYAGISWCFGTHDRPWKER 425 Query: 404 ---PYFRIFNPTIQGKRFDPQGTFIRHWLPELNNV 435 R + + +FD I+ ++ ++ ++ Sbjct: 426 KIFGKVRYMSASGLEAKFD-----IKKYVEKVKSL 455 >gi|295113008|emb|CBL31645.1| Deoxyribodipyrimidine photolyase [Enterococcus sp. 7L76] Length = 256 Score = 135 bits (341), Expect = 1e-29, Method: Composition-based stats. Identities = 56/245 (22%), Positives = 102/245 (41%), Gaps = 11/245 (4%) Query: 11 LVWLRNDLRITDNKALYAACHNSDA-KVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69 ++W R DLR+ DNKAL A NS A ++I +F P+Q+ Q SA + F +ASL ++ Sbjct: 4 VMWFRRDLRLQDNKALAHALQNSAADELILLFQMNPQQFIQE--SANHNAF-FASLASLK 60 Query: 70 KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQ-RVTKLFYNRQYEINEVRRDKLLEKRLQ 128 + + Q + H + ++ + +++N +RD+ + + Sbjct: 61 ERIDQ-----EAHLQIMVGEPLDLFSRLKRKLPDWQAIYFNEDTCGFGAKRDQQAMRFFE 115 Query: 129 HRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187 I SF D+ L I + Y+V+TP+ + + + + Sbjct: 116 ENNIQSFSFQDAYLHGSEEIKKNDGSKYQVFTPYYNKWKEAPKETPIPVSYTAEKIFSAC 175 Query: 188 VTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSP 247 + P + + + + +GE+ A L F +K+ Y +RD P TS LS Sbjct: 176 LFPEEEAAYREQIARIPLTHYSVGEETARRRLNTFIDQKLQSYENKRDFPYQDQTSHLST 235 Query: 248 YLSIG 252 + G Sbjct: 236 FFKNG 240 >gi|302781626|ref|XP_002972587.1| hypothetical protein SELMODRAFT_97206 [Selaginella moellendorffii] gi|300160054|gb|EFJ26673.1| hypothetical protein SELMODRAFT_97206 [Selaginella moellendorffii] Length = 510 Score = 135 bits (341), Expect = 1e-29, Method: Composition-based stats. Identities = 85/462 (18%), Positives = 148/462 (32%), Gaps = 45/462 (9%) Query: 5 TAMSVHLVWLRNDLRITDNKALYAACHNS---DAKVIAVFIATPEQWRQHGISARQSHFI 61 + + W+ D R DN AL A + D V VF AR F+ Sbjct: 58 SHSGPVVYWMSRDQRSRDNWALLYAAEQARKRDTPVAVVFNLVESFLEAK---ARHFGFL 114 Query: 62 YASLLQVQKSLSQKGI---VFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVR 118 L V+K+L + GI + + +E ++ L + L I Sbjct: 115 LRGLRVVEKNLDKLGIAFFLLRGRPEDTIPSFVEACNASILVLDFSSL------RIGRTW 168 Query: 119 RDKLLEKR-LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSL 177 R ++ + D ++P + + + + + Sbjct: 169 RTGVVSRLGADTTTAVHEVDAHNVVPVWIASDKLEYAARTIRLKIQRQLPEFLVDFPTLE 228 Query: 178 PVPAIRLTGPVTPSNIPRFFDYPFQAIDP-----MFPIGEQNALHILRKFCKEKVYYYVE 232 P + D +A D GE AL L F ++ Y Sbjct: 229 PFSKPWPGVAQEKIDWDSLIDEVLRAGDEVPEVDWCEPGEDIALERLAVFLSSRLQRYSA 288 Query: 233 QRDIPA-IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNEL-IWREF 290 +R+ P+ ++ S LSPY G LSP++C ++ S+L EL I RE Sbjct: 289 ERNDPSKLERLSDLSPYFHYGQLSPQRCAFEVR----KARKLHMQSVDSFLEELIIRREL 344 Query: 291 YRHLMAFYPSVCMGKPFIPWTEK--IEWNKDSHLLQAWKQ----GYTGFPIIDAAMRQLN 344 + + P+ + W +E D +Q G T + +A+ ++ Sbjct: 345 SDNFCYYQPNYDNIQGAWEWARNSLLEHANDKREHIYTRQQLEDGKTKDKLWNASQLEMV 404 Query: 345 TIGWMHNRLRMITASFLVKDLLVDWR--IGEEYF-MSQLLDGDLASNNGGWQWAASTGND 401 G MH +RM A +++ YF LDG + G W+ +D Sbjct: 405 HRGKMHGFMRMYWAKKILEWTESPEDALAIAIYFNDKYQLDGRDPNGYVGCMWSICGIHD 464 Query: 402 S-------VPYFRIFNPTIQGKRFDPQGT--FIRHWLPELNN 434 R N ++F+ G ++ + E+ Sbjct: 465 QGWKERPIFGKIRYMNYEGCKRKFNVDGYIMYVNKLVAEVKK 506 >gi|304315052|ref|YP_003850199.1| deoxyribodipyrimidine photo-lyase [Methanothermobacter marburgensis str. Marburg] gi|313104153|sp|P58818|PHR_METTM RecName: Full=Deoxyribodipyrimidine photo-lyase; AltName: Full=DNA photolyase; AltName: Full=Photoreactivating enzyme gi|302588511|gb|ADL58886.1| deoxyribodipyrimidine photo-lyase [Methanothermobacter marburgensis str. Marburg] Length = 444 Score = 135 bits (341), Expect = 1e-29, Method: Composition-based stats. Identities = 80/445 (17%), Positives = 161/445 (36%), Gaps = 44/445 (9%) Query: 11 LVWLRNDLRITDNKALYAACHNSDA---KVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67 + W++ +R N AL A +++ +I +F T E ++R F+ L Sbjct: 23 IYWMQASVRAHWNHALEYAIETANSLHKPLIVIFGLTDEF---PNANSRHYRFLIEGLRD 79 Query: 68 VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQY-EINEVRRDKLLEKR 126 V +L ++G + + Y + + + +R Y +I + D+L E Sbjct: 80 VGDALMKRGARLVVEN----ERPPSAVMRYSDE--ASAVVVDRGYLDIQKEWVDELAESL 133 Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTP-FRKALIQNLVQADLRSLPVPAIRLT 185 V + +V++P + + P + L + +V R L V ++ L Sbjct: 134 ---HVPLMQVESNVIVPVETASPKEEYSAGTFRPKITRELERFMVPLKERRLAVDSLDLD 190 Query: 186 GPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245 +++ F + +F G A+ + +F EK+ + + R+ P S + Sbjct: 191 PGPDLNDVTGKFRASEELEPSIFSGGASEAIRLFDEFLSEKLACFEKYRNDPVKNCLSNM 250 Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELI-WREFYRHLMAFYPSVCMG 304 SPYL G +SP ++ + +L ELI RE + + + + Sbjct: 251 SPYLHFGHISP---------LYLAMKASKTGECPEFLEELIVRRELSMNFVHYSDNYSSI 301 Query: 305 KPFIPWTEKI------EWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITA 358 + W +K + + + L+ +++ T P +AA +++ G MH +RM Sbjct: 302 RCLPEWAQKTLMEHARDPKEYEYTLREFEEARTHDPYWNAAQKEMVITGKMHGYMRMYWG 361 Query: 359 SF---LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSV------PYFRIF 409 + I +DG + G W + + R Sbjct: 362 KKILEWTDHPERAYDIAIYLNDKYEIDGRDPNGFTGVAWCFGKHDRAWAEREIFGKVRYM 421 Query: 410 NPTIQGKRFDPQGTFIRHWLPELNN 434 N ++F G ++R + EL Sbjct: 422 NDRGLERKFR-IGEYVRR-VQELEE 444 >gi|1617219|emb|CAA67683.1| CPD photolyase [Arabidopsis thaliana] gi|2984707|gb|AAC08008.1| type II CPD photolyase PHR1 [Arabidopsis thaliana] Length = 496 Score = 135 bits (340), Expect = 2e-29, Method: Composition-based stats. Identities = 86/456 (18%), Positives = 153/456 (33%), Gaps = 45/456 (9%) Query: 2 KATTAMSVHLVWLRNDLRITDNKALYAA---CHNSDAKVIAVFIATPEQWRQHGISARQS 58 + + + W+ D R+ DN AL A + ++A V VF + ARQ Sbjct: 22 PSDQTVGPVVYWMFRDQRLKDNWALIHAVDLANRTNAPVAVVFNLFDQFL---DAKARQL 78 Query: 59 HFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVR 118 F+ L Q+ + I F Q D+ E + ++ + + L + + E+R Sbjct: 79 GFMLKGLRQLHHQIDSLQIPFFLLQ----GDAKETIPNFLTECGASHLVTD-FSPLREIR 133 Query: 119 RDK-LLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALI-QNLVQADLRS 176 R K + KR + D ++P + + + L+ L++ Sbjct: 134 RCKDEVVKRTSDSLAIHEVDAHNVVPMWAASSKLEYSARTIRGKINKLLPDYLIEFPKLE 193 Query: 177 LPVPAIRLTGPVTPSNIPRFFD----YPFQAIDPMFP-IGEQNALHIL----RKFCKEKV 227 P + D + + + GE + +L F +++ Sbjct: 194 PPKKKWTGMMDKKLVDWDSLIDKVVREGAEVPEIEWCVPGEDAGIEVLMGNKDGFLTKRL 253 Query: 228 YYYVEQRDIPAIQ-GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELI 286 Y R+ P S LSPYL G +S ++C + + +L ELI Sbjct: 254 KNYSTDRNNPIKPKALSGLSPYLHFGQVSAQRCALEAR----KVRSTSPQAVDIFLEELI 309 Query: 287 -WREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHL------LQAWKQGYTGFPIIDAA 339 RE + + P K W K + S L+ ++G T P+ +A+ Sbjct: 310 VRRELSDNFCYYQPHYDSLKGAWEWARKSLMDHASDKREHIYSLEQLEKGLTADPLWNAS 369 Query: 340 MRQLNTIGWMHNRLRMITASF---LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAA 396 ++ G MH +RM A K I +DG S G W+ Sbjct: 370 QLEMLYQGKMHGFMRMYWAKKILEWTKGPEEALSISIYLNNKYEIDGRDPSGYVGCMWSI 429 Query: 397 STGNDS-------VPYFRIFNPTIQGKRFDPQGTFI 425 +D R N ++F+ ++I Sbjct: 430 CGVHDQGWKERPVFGKIRYMNYAGCKRKFNVD-SYI 464 >gi|321460192|gb|EFX71237.1| DNA photolyase 2 [Daphnia pulex] Length = 523 Score = 135 bits (340), Expect = 2e-29, Method: Composition-based stats. Identities = 76/425 (17%), Positives = 139/425 (32%), Gaps = 20/425 (4%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 L W+ + R+ DN AL A + + + I G + RQ F+ L +V+ Sbjct: 82 LYWMSREQRVQDNWALLYAQRLALKMKLPLHICFCLVPTFLGATIRQFGFMLKGLEEVET 141 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130 + I F + + + + L + + + +++ + Sbjct: 142 ECQKLKIEFHLLKGESQICVPDLITKLKL----DAVVADFSPLRVPLSWIDKVKESIPKN 197 Query: 131 VICKSFDDSVLLPPGSILNHAL-QMYKVYTPFRKALIQNLVQADLRS-LPVPAIRLTGPV 188 V D ++P + + L + L + P PA V Sbjct: 198 VPFCQIDAHNIVPVWVASDKQEVGARTIRKKINDKLDEFLTEFPPVIVHPHPAKTKAKSV 257 Query: 189 TPSNIPRFFDYPFQAIDPMF-PIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSP 247 + + + + G ++ L L FC+ ++ Y E+R+ P + S LSP Sbjct: 258 DWKAADAYLEVDRTVGEVDWITPGTKSGLQELFNFCQRRLKMYAEKRNDPNLAALSNLSP 317 Query: 248 YLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSV-CMGKP 306 +L G +S ++C +K + + + + Y ++ Sbjct: 318 WLHFGQISAQRCILEVKGYKTKHAKSVDAYMEETIIRRELSDNFCFYNTNYDNLKGAANW 377 Query: 307 FIPWTEKIEWNKDSHLL--QAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASF---L 361 E + +K LL Q ++G T + +A+ QL G MH LRM A Sbjct: 378 AQETLEVHKKDKRPALLSAQQLEEGKTHDDLWNASQIQLTRTGKMHGFLRMYWAKKILEW 437 Query: 362 VKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDS-------VPYFRIFNPTIQ 414 + RI LDG S G W+ +D R N Sbjct: 438 TETPEEALRIAIYLNDRYSLDGRDPSGYVGCMWSICGIHDMGWKQRDVFGKIRYMNYKGC 497 Query: 415 GKRFD 419 ++FD Sbjct: 498 QRKFD 502 >gi|291286943|ref|YP_003503759.1| deoxyribodipyrimidine photolyase [Denitrovibrio acetiphilus DSM 12809] gi|290884103|gb|ADD67803.1| deoxyribodipyrimidine photolyase [Denitrovibrio acetiphilus DSM 12809] Length = 446 Score = 135 bits (339), Expect = 2e-29, Method: Composition-based stats. Identities = 78/426 (18%), Positives = 146/426 (34%), Gaps = 36/426 (8%) Query: 8 SVHLVWLRNDLRITDNKALYAA---CHNSDAKVIAVFIATPEQWRQHGISARQSHFIYAS 64 + W+ D R+ DN AL A + + + VF P+ + F+ Sbjct: 19 GPVIYWMNRDQRVRDNWALIKAMELAESRQSPMAVVFCLIPDYPSARN---QHFRFMMEG 75 Query: 65 LLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLE 124 L ++ L I F + ++ L + Q + + + ++ ++ ++ Sbjct: 76 LCEIDLELEYLKIPFFMISG----NPVDELSKFIRQVGAGAVV----TDFSPLKFNRKMK 127 Query: 125 KRLQH--RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAI 182 L V D ++P + + P L+ + + L Sbjct: 128 LELAEVINVPLIEVDAHNIVPCRIASHKEEFAARTIRPKINGLLSQFL-VEFPKLKQQRY 186 Query: 183 RLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGT 242 + G + R + F + +P G + A L F + Y +R+ P I Sbjct: 187 KWKGHTAHIDWERVIN-SFGIPNNFYPAGIRAADEALHNFVTGSLNGYNIKRNDPTIDHQ 245 Query: 243 SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNEL-IWREFYRHLMAFYPSV 301 S LSPYL G +S ++C E F ++ EL + RE + + Sbjct: 246 SNLSPYLHFGNISAQRCALDAGEAFW-----ADEDIRAFKEELVVRRELAENYCFYNDHY 300 Query: 302 CMGKPFIPWTEK-IEWNKDS-----HLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRM 355 + W +K IE ++D + ++Q T P+ +AA +++ G MH +RM Sbjct: 301 DSVEGAHSWAKKTIEEHRDDSREYIYGYDEFEQAKTHDPLWNAAQKEMAIKGKMHGYMRM 360 Query: 356 ITASF---LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPT 412 A D+ + LDG + G W+ +D + R P Sbjct: 361 YWAKKMLEWTPDVETAFETALSLNDRYSLDGRDPNGYTGVAWSVCGVHDRAWFER---PV 417 Query: 413 IQGKRF 418 R+ Sbjct: 418 FGKIRY 423 >gi|62859891|ref|NP_001017311.1| cryptochrome 1 (photolyase-like) [Xenopus (Silurana) tropicalis] Length = 241 Score = 135 bits (339), Expect = 2e-29, Method: Composition-based stats. Identities = 45/244 (18%), Positives = 83/244 (34%), Gaps = 24/244 (9%) Query: 7 MSVH-LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASL 65 M V+ + W R LR+ DN AL +D + V+I P + + F+ L Sbjct: 1 MGVNAVHWFRKGLRLHDNPALRECIQGADT-IRCVYILDPWFAGSSNVGINRWRFLLQCL 59 Query: 66 LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125 + +L + + + + ++TKL E RD ++K Sbjct: 60 EDLDANLRKLNSRLFVIRG----QPADVFPRLFKEWKITKLSIEYDSEPFGKERDAAIKK 115 Query: 126 RLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLV-QADLRSLPVPAI-- 182 + S L L+ +++ P Q L+ + + +PV I Sbjct: 116 LASEAGVEVIVRISHTLY---DLDKIIELNGGQPPLTYKRFQTLISKMEPLEIPVETITA 172 Query: 183 ----RLTGPVTPSNIPR-----FFDYPFQA---IDPMFPIGEQNALHILRKFCKEKVYYY 230 + T PV + + + F ++P GE AL L + + K + Sbjct: 173 EVMEKCTTPVLDDHDEKYGVPSLEELGFDTEGLPSAVWPGGETEALTRLERHLERKAWVA 232 Query: 231 VEQR 234 +R Sbjct: 233 NFER 236 >gi|300934396|ref|ZP_07149652.1| deoxyribodipyrimidine photolyase [Corynebacterium resistens DSM 45100] Length = 265 Score = 135 bits (339), Expect = 2e-29, Method: Composition-based stats. Identities = 58/265 (21%), Positives = 96/265 (36%), Gaps = 30/265 (11%) Query: 1 MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIAT-PEQWRQHGISARQSH 59 M + LVW R+DLR+ DN AL A S V+ VFI PE + A + Sbjct: 1 MADNSGAGPTLVWFRDDLRLRDNPALTWAA--SRGPVVGVFILESPEATHARPLGAAAAW 58 Query: 60 FIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRR 119 F + ++ + L+ + E + S Q + ++R+Y + Sbjct: 59 FQHKAIRGLHDELAAHNVPLLLAAGDPR----EVIPSLAAQL-AGAVTWSRRYHQPFIDL 113 Query: 120 DKLLEKRLQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLP 178 D ++ L ++ KS +L P I Y+ +TPF + + + P Sbjct: 114 DAHVKTALANQGTEAKSHSGYLLSEPWMIRTGQGTPYRKFTPFARNVEDFATGDIAENPP 173 Query: 179 VP-AIRLTGPVTPSNIPRFFDYPFQAIDP--------MFPIGEQNALHILRKFC------ 223 + L GP ++ A +P + GE AL+ L++F Sbjct: 174 LDIPAGLHGPRDLELDYPEWELSSLAAEPAWTKKLQSHWEAGESGALNTLQQFVATLSGE 233 Query: 224 ------KEKVYYYVEQRDIPAIQGT 242 E Y + RD PA+ T Sbjct: 234 NLPASSAEVRLGYSDGRDYPAVTRT 258 >gi|30682738|ref|NP_849651.1| PHR1 (PHOTOLYASE 1); DNA photolyase [Arabidopsis thaliana] gi|75201504|sp|Q9SB00|PHR_ARATH RecName: Full=Deoxyribodipyrimidine photo-lyase; AltName: Full=AtCPDII; AltName: Full=DNA photolyase; AltName: Full=Photoreactivating enzyme 1; AltName: Full=Protein UV RESISTANCE 2 gi|4239819|dbj|BAA74701.1| PHR1 [Arabidopsis thaliana] gi|332190750|gb|AEE28871.1| photolyase 1 [Arabidopsis thaliana] Length = 496 Score = 135 bits (339), Expect = 2e-29, Method: Composition-based stats. Identities = 86/454 (18%), Positives = 153/454 (33%), Gaps = 45/454 (9%) Query: 4 TTAMSVHLVWLRNDLRITDNKALYAA---CHNSDAKVIAVFIATPEQWRQHGISARQSHF 60 + + W+ D R+ DN AL A + ++A V VF + ARQ F Sbjct: 24 DQTVGPVVYWMFRDQRLKDNWALIHAVDLANRTNAPVAVVFNLFDQFL---DAKARQLGF 80 Query: 61 IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120 + L Q+ + I F Q D+ E + ++ + + L + + E+RR Sbjct: 81 MLKGLRQLHHQIDSLQIPFFLLQ----GDAKETIPNFLTECGASHLVTD-FSPLREIRRC 135 Query: 121 K-LLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALI-QNLVQADLRSLP 178 K + KR + D ++P + + + L+ L++ P Sbjct: 136 KDEVVKRTSDSLAIHEVDAHNVVPMWAASSKLEYSARTIRGKINKLLPDYLIEFPKLEPP 195 Query: 179 VPAIRLTGPVTPSNIPRFFD----YPFQAIDPMFP-IGEQNALHIL----RKFCKEKVYY 229 + D + + + GE + +L F +++ Sbjct: 196 KKKWTGMMDKKLVDWDSLIDKVVREGAEVPEIEWCVPGEDAGIEVLMGNKDGFLTKRLKN 255 Query: 230 YVEQRDIPAIQ-GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELI-W 287 Y R+ P S LSPYL G +S ++C + + ++L ELI Sbjct: 256 YSTDRNNPIKPKALSGLSPYLHFGQVSAQRCALEAR----KVRSTSPQAVDTFLEELIVR 311 Query: 288 REFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHL------LQAWKQGYTGFPIIDAAMR 341 RE + + P K W K + S L+ ++G T P+ +A+ Sbjct: 312 RELSDNFCYYQPHYDSLKGAWEWARKSLMDHASDKREHIYSLEQLEKGLTADPLWNASQL 371 Query: 342 QLNTIGWMHNRLRMITASF---LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAAST 398 ++ G MH +RM A K I +DG S G W+ Sbjct: 372 EMVYQGKMHGFMRMYWAKKILEWTKGPEEALSISIYLNNKYEIDGRDPSGYVGCMWSICG 431 Query: 399 GNDS-------VPYFRIFNPTIQGKRFDPQGTFI 425 +D R N ++F+ ++I Sbjct: 432 VHDQGWKERPVFGKIRYMNYAGCKRKFNVD-SYI 464 >gi|237756180|ref|ZP_04584748.1| deoxyribodipyrimidine photo-lyase [Sulfurihydrogenibium yellowstonense SS-5] gi|237691667|gb|EEP60707.1| deoxyribodipyrimidine photo-lyase [Sulfurihydrogenibium yellowstonense SS-5] Length = 455 Score = 134 bits (338), Expect = 2e-29, Method: Composition-based stats. Identities = 85/451 (18%), Positives = 164/451 (36%), Gaps = 46/451 (10%) Query: 11 LVWLRNDLRITDNKALYAACHNSD---AKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67 + W+ + R N L A S+ ++ F+ T + +AR F+ +L+ Sbjct: 25 IYWMSHSHRANFNHGLEYAIKLSNDYKKPLLVYFLITDKY---KYSNARYYKFMLDGVLE 81 Query: 68 VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127 +KS+ ++GI F + + I + + L ++ Y + + K+L Sbjct: 82 AKKSIEERGIKFIIEKSDDIKQRI-----IEISRSAVALITDKAYLKYYRKLYSDIAKQL 136 Query: 128 QHRVICKSFDDSVLLPPG-SILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 + + V +P + + + + L L++ R + ++ L Sbjct: 137 D--IPFYEVESDVCIPVEIASQKQEVYAFNLRKKIYALLDSYLLKLAPREPKIKSVNLDF 194 Query: 187 PVTPSNIPRFFDY------PFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ 240 + + + F G A L++F ++K++ Y E R P + Sbjct: 195 GIKELTLNSSLEILDILNIDKSVSLSPFIGGYNQAKRCLKEFIEKKLHKYKEYRSHPELD 254 Query: 241 GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELI-WREFYRHLMAFYP 299 S LSPYL G +SP + + E+ K S+ NELI WRE R+ + P Sbjct: 255 YQSNLSPYLHFGQISPIEVVLEILSEY-----KKDENVDSFFNELIVWRELARNFCYYNP 309 Query: 300 SVCMGKPFIPWTEKI--EWNKDS----HLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRL 353 + + W +K + D + L+ ++ T +AA +L G MHN + Sbjct: 310 NYNHYEGIPDWAKKTLEDHKNDKRDYVYTLEEFENAKTHDEYWNAAQLELLKSGKMHNYM 369 Query: 354 RMITASF---LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSV------P 404 RM +D + I LDG + G W T + Sbjct: 370 RMYWCKKIIEWTQDPKHAFDIACYLNDKYELDGRDPNGYAGISWCFGTHDRPWKERKIFG 429 Query: 405 YFRIFNPTIQGKRFDPQGTFIRHWLPELNNV 435 R + + +FD I+ ++ ++ ++ Sbjct: 430 KIRYMSASGLEAKFD-----IKKYVEKVKSL 455 >gi|282896459|ref|ZP_06304479.1| deoxyribodipyrimidine photolyase-like protein [Raphidiopsis brookii D9] gi|281198565|gb|EFA73446.1| deoxyribodipyrimidine photolyase-like protein [Raphidiopsis brookii D9] Length = 262 Score = 134 bits (338), Expect = 2e-29, Method: Composition-based stats. Identities = 58/211 (27%), Positives = 95/211 (45%), Gaps = 9/211 (4%) Query: 206 PMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKE 265 P G + A L K Y + R+ ++LSPY+ GVLS R+ Sbjct: 30 SGIPGGRKAAEAQLE---KVNTVSYAKTRNYL-TGAVTRLSPYIRHGVLSLREV-----R 80 Query: 266 EFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQA 325 E++ ++ +NEL WR++++ L T + +L + Sbjct: 81 EYILNTVENSEDGSKLINELGWRDYWQRLYMKLGKGIWENQEEYKTGYHTEDYSHNLPED 140 Query: 326 WKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDL 385 ++ TG ID+ ++L G++HN +RM AS+++ + W+ G ++F+ LLDGD Sbjct: 141 IQESKTGLVCIDSFSQELRVTGYLHNHIRMWLASYIIHWRKIQWQAGAKWFLQHLLDGDP 200 Query: 386 ASNNGGWQWAASTGNDSVPYFRIFNPTIQGK 416 ASNN WQW AST + +F N K Sbjct: 201 ASNNMSWQWVASTFSHKPYFFNRENLERYTK 231 >gi|189499730|ref|YP_001959200.1| deoxyribodipyrimidine photolyase [Chlorobium phaeobacteroides BS1] gi|189495171|gb|ACE03719.1| deoxyribodipyrimidine photolyase [Chlorobium phaeobacteroides BS1] Length = 451 Score = 134 bits (338), Expect = 3e-29, Method: Composition-based stats. Identities = 87/449 (19%), Positives = 149/449 (33%), Gaps = 50/449 (11%) Query: 8 SVHLVWLRNDLRITDNKALYAACH---NSDAKVIAVFIATPEQWRQHGISARQSHFIYAS 64 + W+ D R +N AL A ++ +I F P R F+ Sbjct: 18 GPVVYWMSRDQRAENNWALLFAEQLSMQNNQPLIVAFNLVPSYPEATL---RHYDFMLKG 74 Query: 65 LLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYN-RQYEINEVRRDKLL 123 L+QV++ L I F + + + R + + +I+E ++K+L Sbjct: 75 LMQVEQQLEALNIPFLVLSG----NPEREIPRFTASCRAGAVVTDFSPLKISETWKNKVL 130 Query: 124 EKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIR 183 E + D ++P + N + P L++ + L + Sbjct: 131 EHI---PIPFYEVDAHNIVPCRTASNKLEFSARTIRPKINRLLETFL-TGFPELKGQSPE 186 Query: 184 LTGPVTPSNIPRFFDY--------PFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRD 235 V P + ++ P IDP G A L+KF ++ Y + R+ Sbjct: 187 RKSAVPPVEWNKLYETLRINRAVAPVTWIDP----GGDAATKTLKKFIDHRLASYPKLRN 242 Query: 236 IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNEL-IWREFYRHL 294 P S LSPYL G +S + ++ P+S +L EL I RE + Sbjct: 243 DPNAHAVSDLSPYLHFGQISAQHVAREIQ-----ASDAPRSAKDVFLEELVIRRELADNY 297 Query: 295 MAFYPSVCMGKPFIPWTEKI--EWNKDSHLLQAW----KQGYTGFPIIDAAMRQLNTIGW 348 + K PW + D+ ++ T P+ +AA ++L G Sbjct: 298 CLYNKHYDSLKGIHPWAAETLERHRTDTREFLYTADDLEKASTHDPLWNAAQKELCNTGK 357 Query: 349 MHNRLRMITASF---LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSV-- 403 MH LRM A D + LDG + G W+ +D Sbjct: 358 MHGYLRMYWAKKILEWTPDPDTAFETALLLNDKYSLDGRDPNGFTGIAWSIGGVHDRAWF 417 Query: 404 -----PYFRIFNPTIQGKRFDPQGTFIRH 427 R N ++F+ +I+ Sbjct: 418 ERPVFGKIRYMNYNGCVRKFNVD-NYIKT 445 >gi|318042774|ref|ZP_07974730.1| deoxyribodipyrimidine photolyase [Synechococcus sp. CB0101] Length = 340 Score = 134 bits (338), Expect = 3e-29, Method: Composition-based stats. Identities = 56/228 (24%), Positives = 96/228 (42%), Gaps = 14/228 (6%) Query: 200 PFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQC 259 + F G A +L + + Y + R+ ++LSPY+ G LS + Sbjct: 70 GAEGSLSPFRGGRHQAEQLLSRI---QPARYAKGRNFLDGP-VTRLSPYIRQGALSLAEV 125 Query: 260 WNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKD 319 + + ++ ++ +NEL WR++++ L T Sbjct: 126 RDAVF-----AKLRSRTDGEKLINELGWRDYWQRLWHQLGHGIWRDQEELKTGHHPGAYS 180 Query: 320 SHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQ 379 L +G TG +D + +L++ GW+HN RM A++LV + W+ G ++F+ Sbjct: 181 PELPGDIAEGRTGLACMDGFITELHSTGWLHNHARMWLAAYLVHWRRIRWQAGAQWFLRH 240 Query: 380 LLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRH 427 LLDGD ASNN WQW AS+ + +F N G++ R Sbjct: 241 LLDGDPASNNLSWQWVASSFSHKPYFFNRSNLERYS-----HGSYCRR 283 >gi|9634828|ref|NP_039121.1| Photolyase [Fowlpox virus] gi|7271656|gb|AAF44502.1|AF198100_149 ORF FPV158 Photolyase [Fowlpox virus] gi|8926140|gb|AAF81696.1|AF246697_1 CPD-photolyase [Fowlpox virus] Length = 464 Score = 134 bits (337), Expect = 3e-29, Method: Composition-based stats. Identities = 76/436 (17%), Positives = 142/436 (32%), Gaps = 24/436 (5%) Query: 8 SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67 V L W+ D R+ DN AL A + I + I + H ++R F+ + L + Sbjct: 37 KVVLYWMFRDQRVQDNWALIYAQRLALKLKIPLRICFCVVPKFHTTTSRHFMFLISGLKE 96 Query: 68 VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127 V + + I F + Y + +T F R E R K L Sbjct: 97 VAEECKRLCIGFSLIYGVPKVIIPCIVKKYRVGVIITDFFPLRVPE----RLMKQTVISL 152 Query: 128 QHRVICKSFDDSVLLPPGSILNHA-LQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 + D ++P + + L + + + + Sbjct: 153 PDNIPFIQVDAHNIVPCWEASDKEEYGARTLRKKIFDKLYEYMTEFPVVRKHPYGPFSIS 212 Query: 187 PVTPSNIPRFFDYPFQAIDPMF-PIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245 P NI + + G + + +L++F K ++ Y + P S L Sbjct: 213 IAKPKNI----SLDKTVLPVKWATPGTKAGIIVLKEFIKNRLPSYDADHNNPTCDALSNL 268 Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305 SP+L G +S ++ + + + ++ + + + + Y S+ Sbjct: 269 SPWLHFGHVSAQRVALEVLKCIRESKKNVETFIDEIIVRRELSDNFCYYNKHYDSIQSTH 328 Query: 306 PFIPWTEKIEWNKDSHLLQAWKQ---GYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLV 362 + T + N + + KQ T P+ +A+ Q+ G MH+ LRM A ++ Sbjct: 329 SWARKTLEDHINDPRKYIYSIKQLEKAETHDPLWNASQMQMVREGKMHSFLRMYWAKKIL 388 Query: 363 KDLLVDWR---IGEEYFMSQLLDGDLASNNGGWQWAASTGNDSV-------PYFRIFNPT 412 + LDG + G W+ +D R N Sbjct: 389 EWTRTPEDALSYSIYLNNKYELDGTDPNGYVGCMWSICGLHDRAWKERPIFGKIRYMNYE 448 Query: 413 IQGKRFDPQGTFIRHW 428 K+FD FI+ + Sbjct: 449 SSKKKFDV-AVFIQKY 463 >gi|289740223|gb|ADD18859.1| photolyase [Glossina morsitans morsitans] Length = 510 Score = 134 bits (337), Expect = 3e-29, Method: Composition-based stats. Identities = 76/444 (17%), Positives = 144/444 (32%), Gaps = 35/444 (7%) Query: 8 SVHLVWLRNDLRITDNKALYAACHNS---DAKVIAVFIATPEQWRQHGISARQSHFIYAS 64 + W+ D R+ DN A A + + + F P+ + R F+ Sbjct: 71 GPVVYWMYRDQRVQDNWAFLYAQRLALKLELPLCVCFCLLPKYI---HTTLRHYKFMLTG 127 Query: 65 LLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLE 124 L +V + + F + +E+L + + ++ + ++ Sbjct: 128 LEEVSEECEDLNVSFHLLKGPAHQSLVEFLKDV----DAATVVCDFSPLRLPLQWLEEIK 183 Query: 125 KRLQHRVICKSFDDSVLLPPG-SILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIR 183 + L + D ++P + + L + L + R Sbjct: 184 EVLPTTIPFIQIDAHNVVPVWFASQKQEYAARTIRNKINSQLEEYLTEFPPLIRHKYPNR 243 Query: 184 LTGPV--TPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQG 241 S G +NA H L +FC+ ++ + ++R+ P I Sbjct: 244 KPSTKVNWKSVYNTLKCLKTVDEVASVKPGYKNACHQLLEFCQNRLKLFHDKRNDPNIDA 303 Query: 242 TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNE-LIWREFYRHLMAFYPS 300 S LSP+ + G +S ++C +K K K ++ E ++ RE + + + Sbjct: 304 LSGLSPWFNFGQISIQRCILEIKTY----EHKFKDSVAAFCEEAIVRRELADNFCFYNQN 359 Query: 301 VCMGKPFIPWTEKI--EWNKDS----HLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLR 354 + W+ K E KD + L+ ++Q T + ++A QL G MH LR Sbjct: 360 YDNFQGLQDWSRKTLNEHRKDERSPCYSLEEFEQARTHDDLWNSAQLQLMREGKMHGFLR 419 Query: 355 MITASF---LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDS-------VP 404 M A K LDG + G W+ +D Sbjct: 420 MYWAKKILEWSKSPEDALEFSLLLNDRYSLDGTDPNGYVGCMWSIGGIHDQGWAERKIFG 479 Query: 405 YFRIFNPTIQGKRFDPQGTFIRHW 428 R N ++FD F+ + Sbjct: 480 KIRYMNYQGCKRKFDVTA-FVARY 502 >gi|119510319|ref|ZP_01629455.1| hypothetical protein N9414_16217 [Nodularia spumigena CCY9414] gi|119465063|gb|EAW45964.1| hypothetical protein N9414_16217 [Nodularia spumigena CCY9414] Length = 280 Score = 134 bits (337), Expect = 3e-29, Method: Composition-based stats. Identities = 62/218 (28%), Positives = 98/218 (44%), Gaps = 14/218 (6%) Query: 210 IGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVD 269 G + A L+ K Y + R+ ++LSPY+ GVLS R+ + + E+ D Sbjct: 34 GGRKAAEKALQ---KVNPVDYAKTRNSL-TGAVTRLSPYIRYGVLSLREVRDDVLEKVQD 89 Query: 270 LLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQG 329 + A +NEL WR++++ L T + L G Sbjct: 90 -----PNDASKLINELGWRDYWQRLYVKLGDRIWEDQEEYKTGYSPKDYADQLPADITAG 144 Query: 330 YTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNN 389 TG ID+ ++L + G++HN +RM A+++V + W+ G ++F+ LLDGD ASNN Sbjct: 145 TTGMVCIDSFSQELRSTGYLHNHMRMWLAAYIVHWRRIRWQAGAKWFLEHLLDGDPASNN 204 Query: 390 GGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRH 427 WQW AST + +F N K G + R Sbjct: 205 MSWQWVASTFSHKPYFFNRENLERYTK-----GVYCRQ 237 >gi|219128726|ref|XP_002184557.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1] gi|217404007|gb|EEC43956.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1] Length = 524 Score = 134 bits (337), Expect = 3e-29, Method: Composition-based stats. Identities = 62/213 (29%), Positives = 96/213 (45%), Gaps = 19/213 (8%) Query: 219 LRKFCKEKVYYYVEQRDIP-AIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSG 277 L +F + ++ + +S+LS +L++G++SPR + + G Sbjct: 321 LTRFVQNGHAATAKRSLADVSDNNSSRLSTFLALGIISPRTV--------HAITAEGGEG 372 Query: 278 AFSWLNELIWREFYRHLMAFYPSVC---MGKPFIPWTEKIEW-----NKDSHLLQAWKQG 329 A + L R+F+ +L S G P + I W + + W QG Sbjct: 373 ARWLCSHLTMRDFFIYLCFASGSRLYQQEGLPVNAKRKNIPWYSPAAPQKYDCWRRWAQG 432 Query: 330 YTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNN 389 +TG P+IDA MR+L G+ NR+R AS L +DL +DWR G E L D +A+N Sbjct: 433 FTGLPLIDAGMRELCQTGYCSNRVRQNIASVLCRDLQIDWRAGAEVLQFLLRDHCVAANW 492 Query: 390 GGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQG 422 G W + + G D P R F Q R+DP+ Sbjct: 493 GNWLYFSGVGPD--PKSRHFRSVSQALRYDPEA 523 Score = 76.6 bits (187), Expect = 9e-12, Method: Composition-based stats. Identities = 27/185 (14%), Positives = 59/185 (31%), Gaps = 29/185 (15%) Query: 1 MKATTAM--SVHLVWLRNDLRITDNKALYA--------ACHNSDAKVIAVFIATPEQWRQ 50 M ++ + S+ L W R DLR+ DN LY N +I++++ + Sbjct: 1 MSSSFSKGRSLRLAWHRRDLRLADNP-LYHPNANDCNKLTVNDSQNIISLYVFDQGDFSL 59 Query: 51 HG------------ISARQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYC 98 + ++ +++ +++SL G + + Sbjct: 60 TPSVTGDPNWTVARTGPHAARYLRRAVVDLRRSLRSIGGELLVRIGDPRLIVPQVVKELR 119 Query: 99 LQQRVTKLFYNRQYEINEVRRDKLLEKRL---QHRVICKSFDDSVLLPPGSILNHALQMY 155 VT++ +N + E + L Q V + + L P + Sbjct: 120 ---DVTEVTWNEDPGVYERNTSDNVRNELFFQQPLVRITTVASTPLYHPDDLPRSKYDWD 176 Query: 156 KVYTP 160 ++ P Sbjct: 177 RLAHP 181 >gi|51246428|ref|YP_066312.1| DNA photolyase [Desulfotalea psychrophila LSv54] gi|50877465|emb|CAG37305.1| probable DNA photolyase [Desulfotalea psychrophila LSv54] Length = 458 Score = 134 bits (337), Expect = 4e-29, Method: Composition-based stats. Identities = 85/436 (19%), Positives = 141/436 (32%), Gaps = 36/436 (8%) Query: 8 SVHLVWLRNDLRITDNKALYAACHNS---DAKVIAVFIATPEQWRQHGISARQSHFIYAS 64 + W+ D R+ DN AL A + ++ VF P+ Q F+ Sbjct: 25 GPVVYWVSRDQRVRDNWALLWAQQEAISRQKGLLVVFCLVPDYLGAKSS---QYLFMLRG 81 Query: 65 LLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLE 124 L ++QK L + I F + S D +L V+ ++ ++R + Sbjct: 82 LARMQKKLHEMNIHFTLFEQSPDDILPGFLRQIDAHLLVS------DFDPLRIKRQWTEQ 135 Query: 125 KRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQ--ADLRSLPVPAI 182 Q D ++P + + P K L+ + + L+ P Sbjct: 136 LIAQVVTPIYQVDTHNIIPAWMVSDKKEYAAYTIRPKIKRLLDDFLTDIPPLQHHPFSWA 195 Query: 183 RLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGT 242 S++ R + + GE +A F K + Y E+R+ P + G Sbjct: 196 HTLALAGSSSLARVISTLNSSGCELRGAGEASAQFAADSFIKIGLENYSERRNNPCLNGQ 255 Query: 243 SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELI-WREFYRHLMAFYPSV 301 S LSPYL G LS ++ + + + + K +L ELI RE + + P Sbjct: 256 SGLSPYLHFGHLSAQRLAWVVSRDKLPIETK-----EPFLEELIVRRELSDNFCLYEPLY 310 Query: 302 CMGKPFIPWTEKI--EWNKDSHL----LQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRM 355 F W K + D + G T + +A L G +H LRM Sbjct: 311 DTFAGFPAWARKSLDQHRCDERAYLYSFHDLEAGNTHEQLWNACQIDLVQSGKLHGYLRM 370 Query: 356 ITASF---LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSV-------PY 405 A + LDG + G W+ +D Sbjct: 371 YWAKKILEWTPNPETALEYAIRLNDRYSLDGRDPNGYAGVAWSIGGVHDRAWAERPVFGK 430 Query: 406 FRIFNPTIQGKRFDPQ 421 R N ++FD Sbjct: 431 IRYMNEAGCRRKFDVN 446 >gi|255264745|ref|ZP_05344087.1| deoxyribodipyrimidine photo-lyase family protein [Thalassiobium sp. R2A62] gi|255107080|gb|EET49754.1| deoxyribodipyrimidine photo-lyase family protein [Thalassiobium sp. R2A62] Length = 378 Score = 133 bits (336), Expect = 4e-29, Method: Composition-based stats. Identities = 67/245 (27%), Positives = 96/245 (39%), Gaps = 14/245 (5%) Query: 208 FPIGEQNALHILRKFCKEKVYYYVEQRDI--PAIQGTSQLSPYLSIGVLSPRQCWNRLKE 265 FP AL L F Y R+ P G S LSPY+ +L+ + ++E Sbjct: 5 FPPTRAAALTRLHAFAPGAGRAYARDRNFDRPDAAGVSALSPYIRHRMLTEPEVLASVRE 64 Query: 266 EFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG---KPFIPWTEKIEWNKDSHL 322 D A ++ E+ WR +++ + PSV + W + + Sbjct: 65 NHSDA------DAEKFIQEVFWRTYWKGWLELRPSVWDDYVVERDQAWNDVQTQSGLRTA 118 Query: 323 LQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLD 382 + G TG D + L G++HN RM AS + L + W +G ++F+ LLD Sbjct: 119 WEDACLGRTGIECFDHWAQDLAATGYLHNHSRMWFASIWIFTLRLPWSLGADFFLRHLLD 178 Query: 383 GDLASNNGGWQWAASTGNDSVPYF-RIFNPTIQ-GKRFDPQGTFIRHWLPELNNVPTQYI 440 GD ASN W+W A Y R N T G RF P+ H P P Sbjct: 179 GDAASNTLSWRWVAGLQTIGKTYLARPDNITKYTGGRFRPK-ELATHAFPVDGTPPRARG 237 Query: 441 HAPHS 445 AP S Sbjct: 238 PAPTS 242 >gi|85858841|ref|YP_461043.1| deoxyribodipyrimidine photolyase [Syntrophus aciditrophicus SB] gi|85721932|gb|ABC76875.1| deoxyribodipyrimidine photolyase [Syntrophus aciditrophicus SB] Length = 460 Score = 133 bits (336), Expect = 4e-29, Method: Composition-based stats. Identities = 85/455 (18%), Positives = 155/455 (34%), Gaps = 45/455 (9%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 L W++ R T N AL A ++A V + + R F+ L ++ Sbjct: 22 LYWMQASQRETCNHALEYAIRKANALCQPVVVFFGIVDDFPEANERHYFFMLEGLCDAKR 81 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130 +L ++GI CS L + + + + +R Y +R K Sbjct: 82 TLEKRGIQLVIQHCSP------ELGVVMMSRDASLVVVDRGY----LRIQKAWRNVAAAS 131 Query: 131 VICK--SFDDSVLLPPGSILNHA-LQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187 + C + V++P + + + L Q L+ + ++ L Sbjct: 132 MDCPLIQVESDVVVPIEETSSKEEYSAATIRKKIHQKLNQYLISLEETKPMADSLSLDFE 191 Query: 188 VTPSNIPRFFDYPFQAIDPM-----FPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGT 242 P + + F G + L F +K+ +Y E R+ P + Sbjct: 192 SFPIDDVERAILRLDIDRSVKCVSFFRGGFEEGRKHLDVFIDQKLEHYAEHRNDPTLDCL 251 Query: 243 SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELI-WREFYRHLMAFYPSV 301 S +SPYL G +SP R+ L ++ + ++L ELI RE + + + Sbjct: 252 SLMSPYLHFGQISPLYIALRI-------LNSGRTSSEAYLEELIVRRELGINFVFYNTHY 304 Query: 302 CMGKPFIPWTEK--IEWNKDSHLLQAWKQ----GYTGFPIIDAAMRQLNTIGWMHNRLRM 355 + W +K KD ++ G T P +AA +++ G MH +RM Sbjct: 305 DTFECLPGWAKKSLRTHEKDQRPYHYSRKELEDGKTHDPYWNAAQKEMVLKGKMHGYMRM 364 Query: 356 ITASFLVKDLLVDWR--IGEEYFMS-QLLDGDLASNNGGWQWAASTGNDSVPYFRIF--- 409 +++ Y + LDG + G W + IF Sbjct: 365 YWGKKIIEWCETPEEAFHTAIYLNNKYELDGREPNGFMGVAWCFGKHDRPWRERNIFGNV 424 Query: 410 ---NPTIQGKRFDPQGTFIR---HWLPELNNVPTQ 438 N ++FD G +++ W + +P Q Sbjct: 425 RYMNDRGLKRKFDADG-YVKLSAQWEDQGALIPNQ 458 >gi|114769242|ref|ZP_01446868.1| DNA photolyase-like protein [alpha proteobacterium HTCC2255] gi|114550159|gb|EAU53040.1| DNA photolyase-like protein [alpha proteobacterium HTCC2255] Length = 418 Score = 133 bits (336), Expect = 4e-29, Method: Composition-based stats. Identities = 53/251 (21%), Positives = 94/251 (37%), Gaps = 15/251 (5%) Query: 202 QAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIP----AIQGTSQLSPYLSIGVLSPR 257 + F + L L++F Y +R+ S LSP++ Sbjct: 13 DKFNEAFIPTREAGLKRLKEFAPLAGEIYSNKRNFDFSSIEKNSVSALSPWIKH------ 66 Query: 258 QCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWN 317 + + L + A ++ E+ WR +++ + +P+V E + Sbjct: 67 RLITEEEVIIEILKYHNQHSAMKFIQEVFWRGYFKGWLEQHPTVWSHHNDKLIKEYAKLE 126 Query: 318 KDS---HLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEE 374 + + G TG D QL + G++HN +RM AS V L + +G + Sbjct: 127 NNRFVKESYMSAVNGETGIECFDFWCEQLKSTGYLHNHVRMWFASIWVFTLKLPMELGAD 186 Query: 375 YFMSQLLDGDLASNNGGWQWAASTGNDSVPY-FRIFNPT-IQGKRFDPQGTFIRHWLPEL 432 +FM L+D D ASN W+W + Y R N +F+P G + + P + Sbjct: 187 FFMLHLIDADAASNTLSWRWVSGLHTKGKAYAARASNIEKFTNGQFNPSGQLVENIEPLI 246 Query: 433 NNVPTQYIHAP 443 N+ + P Sbjct: 247 ENIDHPLVSLP 257 >gi|78186406|ref|YP_374449.1| DNA photolyase, class 2 [Chlorobium luteolum DSM 273] gi|78166308|gb|ABB23406.1| Deoxyribodipyrimidine photo-lyase type II [Chlorobium luteolum DSM 273] Length = 495 Score = 133 bits (336), Expect = 4e-29, Method: Composition-based stats. Identities = 87/492 (17%), Positives = 158/492 (32%), Gaps = 80/492 (16%) Query: 2 KATTAMSVHLVWLRNDLRITDNKALYAA---CHNSDAKVIAVFIATPEQWRQHGISARQS 58 A + W+ D R+ N+AL+ A A +I F +P RQ Sbjct: 12 SAPGISGPVIYWMSRDQRVEQNRALHYARFRAVADGAPLIVAFTLSPSFIGATF---RQY 68 Query: 59 HFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVR 118 F+ L++V++ L + I F + + + + +S VT Y + Sbjct: 69 DFMLRGLMEVERRLRELEIGFVLLEGDPAEAIVRFRESIGSGCVVT------DYSPLRIS 122 Query: 119 RDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLP 178 R V+ D ++P + + P + + L + + P Sbjct: 123 RRWKATAAAALPVLFIEVDAHNIVPCLMASPKQEYSARTFRP---KVNRLLGEFLIALPP 179 Query: 179 VPAIRLTGPVTPSNIPRF-FDYPFQAID---PMFPIGEQNALHILRKFCKEKVYYYVEQR 234 V + + P P++ R P + GE A+ L F +E++ +Y E+R Sbjct: 180 VERVPASEPWAPTDWERVRARLPVERPAGTVRHPQPGEAAAIRHLETFIRERLAWYGERR 239 Query: 235 DIPAIQGTSQLSPYLSIGVLSPRQCWNRLK------------------------------ 264 + P TS LSPYL G + ++ Sbjct: 240 NDPNADATSGLSPYLHFGHIWAGTVAIAVRGVMNVVNSPSPEGWEAIGVVNSTSPEGREA 299 Query: 265 -------------EEFVDLLIKPKSGAFSWLNELI-WREFYRHLMAFYPSVCMGKPFIPW 310 V P+ ++L ELI RE + A+ W Sbjct: 300 SGVVNSTSPEGWEATGVVNSPSPEESKAAFLEELIVRRELSDNYCAYNSRYDSFDGLPIW 359 Query: 311 TEKIEWNKDSHL------LQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364 + + L + +++ T P+ +AA ++L G +H +RM A +++ Sbjct: 360 AQDSLARHAADLREAIYTPEEFEKAVTHDPLWNAAQQELLRTGSIHGYMRMYWAKKILEW 419 Query: 365 LLVDWR--IGEEYF-MSQLLDGDLASNNGGWQWAASTGNDS-------VPYFRIFNPTIQ 414 + LDG + G W+ +D R N Sbjct: 420 SPSPREAFETAVWLNDRYALDGRDPNGYAGVAWSIGGLHDRPWFERPVYGKIRYMNAAGC 479 Query: 415 GKRFDPQGTFIR 426 ++FD + +IR Sbjct: 480 RRKFDVE-RYIR 490 >gi|157278339|ref|NP_001098271.1| photolyase [Oryzias latipes] gi|1401038|dbj|BAA05043.1| photolyase [Oryzias latipes] Length = 504 Score = 133 bits (335), Expect = 5e-29, Method: Composition-based stats. Identities = 78/445 (17%), Positives = 142/445 (31%), Gaps = 43/445 (9%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVF-IATPEQWRQHGISARQSHFIYASLLQVQ 69 L W+ D R+ DN AL A + + + + + + R F+ L +VQ Sbjct: 73 LYWMLRDQRVQDNWALIRAQQLAAKESLPLHVCFCLVVPKSELSTLRHYSFLLKGLEEVQ 132 Query: 70 KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH 129 K I F + D L + + + ++ + ++K L Sbjct: 133 KECKHLNIQFHLLHGAAGD----VLPGFVTGHNFGAVVTDFSPLREPLQWLEAVKKGLPE 188 Query: 130 RVICKSFDDSVLLPPG-SILNHALQMYKVYTPFRKALIQNLVQADLR-SLPVPAIRLTGP 187 + D ++P + + L + L L P A + Sbjct: 189 DIPFIQVDAHNIVPCWVASPKLEYSARTIRGKITNLLSEFLTDFPLVDKHPFSATKTAKA 248 Query: 188 VTPSNIPRFFDYPFQAIDPMF-PIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246 V +P G + L +L F ++ + QR+ P SQLS Sbjct: 249 VDWDKTLASLKVDRTVGEPKLAKPGTEAGLAMLESFIDVRLKLFGTQRNDPNAAALSQLS 308 Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP 306 P+L G LS ++ ++++ +++ EL+ R FY K Sbjct: 309 PWLRFGQLSAQRVALQVRK-------NSSPSVPAFIEELVVRRELTDNFCFY-----NKN 356 Query: 307 FIPWTEKIEW------------NKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLR 354 + T EW + + + +++ T + +AA Q+ T G MH LR Sbjct: 357 YDSVTGAYEWAQKTLKDHAKDKREYLYTREQFEKAQTHDKLWNAAQIQMVTEGKMHGFLR 416 Query: 355 MITASFLVKDLLVDWRIGEEYF---MSQLLDGDLASNNGGWQWAASTGNDS-------VP 404 M A +++ LDG + G W+ +D Sbjct: 417 MYWAKKILEWSTSPEEALSIALYLNDRYELDGQDPNGFVGCMWSICGIHDQGWAERAVFG 476 Query: 405 YFRIFNPTIQGKRFDPQGTFIRHWL 429 R N ++F+ F R + Sbjct: 477 KIRFMNYKGCLRKFNV-AQFERKYC 500 >gi|325115796|emb|CBZ51351.1| hypothetical protein NCLIV_044160 [Neospora caninum Liverpool] Length = 636 Score = 133 bits (335), Expect = 5e-29, Method: Composition-based stats. Identities = 85/457 (18%), Positives = 165/457 (36%), Gaps = 43/457 (9%) Query: 8 SVHLVWLRNDLRITDNKAL---YAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYAS 64 V + +L+ DLR+ +N AL A + ++ + + P Q + R F Sbjct: 82 KVVICYLQRDLRVQENWALLLAQEAARALNKPLVVIHLLVPGLAFQP--TRRHLSFFIGG 139 Query: 65 LLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQ-----YEINEVRR 119 +V+ L I F+ D LD ++ ++F Q + N +R Sbjct: 140 AREVEAELKSLNIGFEL-PIVAKKDPKGRLDEANK--KIEEVFAALQPALAVCDFNPLRL 196 Query: 120 DKLLEKRL-----QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADL 174 + + L + D ++P N A + P +A+++ Sbjct: 197 PTQIVEALARVYGKGLSPLYQVDTHAVVPCWVASNKAETSARTMRPKLQAMLKEFAVPFP 256 Query: 175 RSLPVPAIRLTGPVTPSNIPRFFD----YPFQAIDPMFPIGEQNALHILRKFCK-EKVYY 229 + P P + + P + R P + +D + G + AL +L+ F + + Sbjct: 257 KVEPHPVPWTSKQLFPLDEDRVLSAVKPDPPEPLDS-WKPGTKAALRLLQSFATPQNIAK 315 Query: 230 YVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKP-KSGAFSWLNELI-W 287 Y + R+ P S LSPY+ G ++ ++C + + + G ++++E++ Sbjct: 316 YGKARNDPLADCQSDLSPYIHFGHIAVQRCLMEVSKLKDTTGDRAVHEGVRAFIDEVVVR 375 Query: 288 REFYRHLMAFYPSVCMGKPFIPWTEKI------EWNKDSHLLQAWKQGYTGFPIIDAAMR 341 + + + F P K W ++ + + + A ++G T + +AA Sbjct: 376 SQLSDNFVFFNPHYDDIKGAPDWAKQTLEKHAKDKREPQYEFTALEEGKTYDSLWNAAQL 435 Query: 342 QLNTIGWMHNRLRMITASFLVKDLLVDWR---IGEEYFMSQLLDGDLASNNGGWQWAAST 398 QL G MH LRM A L++ LDG + G W+ Sbjct: 436 QLVRDGKMHGYLRMYWAKKLLEWTKSPQEALKTAIALNDKYHLDGTDPNGVTGCMWSIGG 495 Query: 399 GNDS-------VPYFRIFNPTIQGKRFDPQGTFIRHW 428 +D R N ++FD + F+R + Sbjct: 496 VHDQGFKERPVFGKIRYMNYPGCERKFDVKA-FVRKF 531 >gi|320102273|ref|YP_004177864.1| DNA photolyase FAD-binding protein [Isosphaera pallida ATCC 43644] gi|319749555|gb|ADV61315.1| DNA photolyase FAD-binding protein [Isosphaera pallida ATCC 43644] Length = 486 Score = 133 bits (335), Expect = 5e-29, Method: Composition-based stats. Identities = 85/457 (18%), Positives = 153/457 (33%), Gaps = 47/457 (10%) Query: 8 SVHLVWLRNDLRITDNKALYAACHNSDA---KVIAVFIATPEQWRQHGISARQSHFIYAS 64 S L W++ R N AL A ++ V AVF TP R F+ Sbjct: 27 SCVLYWMQRAQRAKANPALNLAIALGNSLKLPVWAVFGLTPSYPEAQ---RRHYRFLIEG 83 Query: 65 LLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEIN-EVRRDKLL 123 L+ Q +Q G+ ++ ++ + + + + Sbjct: 84 LVDTQADAAQLGVPLVVRLGDPPAVVLKAVEESRP-----AVVVGDENPVRIGQCWRAKV 138 Query: 124 EKRLQHRVICKSFDD--------SVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLR 175 + L R F S L P ++ K++ + L V Sbjct: 139 AESLSQRARPIPFPVVDADVVVPSSLFPKEEYAARTIRP-KIHRMLHEWLKPLPVIKAKT 197 Query: 176 SLPVPAIRLTGP-----VTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYY 230 P GP +T ++ P +P G + A L++F +++ Y Sbjct: 198 PWPTDESGQGGPPQGEPITVEHLMGQIRVGGVGEVPNYPGGTREAERRLQRFVAQRLARY 257 Query: 231 VEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKP--KSGAFSWLNELI-W 287 + R+ P TS+LS +L G +SP +++E + + K+ S+L E+I Sbjct: 258 GKDRNEPIPYMTSELSAHLHFGHISPLTIALAVQKEAEEAGVAAETKASVESYLEEMIVR 317 Query: 288 REFYRHLMAFYPSVCMGKPFIPWTEKI--EWNKDS----HLLQAWKQGYTGFPIIDAAMR 341 RE + +A P W + D + ++ T P+ +AA + Sbjct: 318 RELAINFVARNPKYDSLAGCPDWARATLAKHANDPRPKLYTATQLERAETHDPLWNAAQK 377 Query: 342 QLNTIGWMHNRLRMITASF---LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAAST 398 ++ G MHN LRM A D + + + +DG + G WA Sbjct: 378 EMTLTGRMHNYLRMYWAKKILEWSPDPETAFAVALDLNDRYEMDGRDPNGYTGVAWAIGG 437 Query: 399 GNDSV-------PYFRIFNPTIQGKRFDPQG--TFIR 426 +D R + ++FD + ++R Sbjct: 438 KHDRPWGERPIFGTVRYMSYDSTRRKFDSERYIAYVR 474 >gi|297623532|ref|YP_003704966.1| DNA photolyase FAD-binding protein [Truepera radiovictrix DSM 17093] gi|297164712|gb|ADI14423.1| DNA photolyase FAD-binding protein [Truepera radiovictrix DSM 17093] Length = 489 Score = 133 bits (335), Expect = 5e-29, Method: Composition-based stats. Identities = 81/443 (18%), Positives = 155/443 (34%), Gaps = 36/443 (8%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 L W++ R N AL A ++ + +A +AR F+ L V + Sbjct: 58 LYWMQQSQRARFNHALEHAAMWANDLNKPLLVAFGLMDDYPEANARHYAFLLEGLQDVAE 117 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130 +L+++ I F + + + L Q L +R Y ++ + + + + R Sbjct: 118 ALAERRIAFVVQRGRPDEV------ALRLAQDAALLVCDRGYLRHQRLWRERVAREARCR 171 Query: 131 VICKSFDDSVLLPPGSILNH------ALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL 184 V+ D V + S ++ + + + + + ++A R L V + L Sbjct: 172 VVQVESDVVVPVEVASDKKEHAARTLRPKLTRHLETYLRDVEEVALRAPSRELGVEGLDL 231 Query: 185 TGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244 T P + D + F G + +LR F +E+ Y R+ P S Sbjct: 232 TDPGALLASLKL-DTSVAPVRR-FRGGTREGERVLRAFLRERFGDYAATRNQPQTNNVSH 289 Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304 +S YL G +SP ++ K+ ++ RE + + + P Sbjct: 290 MSKYLHFGQISPVFVALEVQRAGA-----GKNAEVYLEELIVRRELPMNFVFYEPHYDRY 344 Query: 305 KPFIPWTEKI--EWNKDSHLLQAWKQ----GYTGFPIIDAAMRQLNTIGWMHNRLRMITA 358 W K E D+ ++ T P +AAM+++ G+MHN +RM Sbjct: 345 DALPAWARKTLDEHRGDAREHLYTREQLEAAETHDPYWNAAMKEMLHTGYMHNYMRMYWG 404 Query: 359 SFLVKDLLVDWRIGEEYFM---SQLLDGDLASNNGGWQWAASTGNDSV------PYFRIF 409 +++ E LDG A++ W + R Sbjct: 405 KKILEWSPSPEEAFETALHLNNRYFLDGRDANSYANVAWVFGQHDRPWAERAVCGKVRYL 464 Query: 410 NPTIQGKRFDPQGTFIRHWLPEL 432 + ++ DP+ ++R + EL Sbjct: 465 SAGGLERKADPKA-YVRK-VEEL 485 >gi|255537109|ref|XP_002509621.1| DNA photolyase, putative [Ricinus communis] gi|223549520|gb|EEF51008.1| DNA photolyase, putative [Ricinus communis] Length = 489 Score = 133 bits (335), Expect = 6e-29, Method: Composition-based stats. Identities = 79/457 (17%), Positives = 148/457 (32%), Gaps = 38/457 (8%) Query: 8 SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67 + W+ D R+ DN AL A ++ + V +A + G ARQ F+ L Sbjct: 25 GPVIYWMFRDQRLRDNWALIHAVDQANKANVPVAVAFNLFDQFLGAKARQLGFMLKGLRL 84 Query: 68 VQKSLSQKG-IVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 +Q + ++ I F Q + D ++L VT R+ + + R Sbjct: 85 LQGKIEERLQIPFFLFQGAAEDTIPQFLGECGASLLVTDFSPLREI----RKSKDEICMR 140 Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 + V D ++P + + + + P + Sbjct: 141 ISDTVTIHEVDAHNIVPIWVASEKLEYSARTIRSKINKRLPDYLIDFPALRPPNTMWSAA 200 Query: 187 PVTPSNIPRFFDY----PFQAIDPMFP-IGEQNALHIL----RKFCKEKVYYYVEQRDIP 237 + D + + + GE A+ +L F +++ Y R+ P Sbjct: 201 ANKSIDWDTLIDEVLRKGAEVPEIEWCMPGEDAAMEVLMGTKNGFLTKRLKNYSTDRNNP 260 Query: 238 AIQ-GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELI-WREFYRHLM 295 G S LSPYL G +S ++C ++ S+L ELI RE + Sbjct: 261 LKPQGLSGLSPYLHFGQISAQRCALEARKAQKLCP----QSVDSFLEELIVRRELADNFC 316 Query: 296 AFYPSVCMGKPFIPWTEKIEWNKDSHLLQAW------KQGYTGFPIIDAAMRQLNTIGWM 349 + P + W + S + ++ T + +A+ ++ G M Sbjct: 317 FYQPHYDSLQGAWEWARNTLLDHASDKREHIYSKEQLERAQTADLLWNASQLEMVYYGKM 376 Query: 350 HNRLRMITASF---LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDS---- 402 H +RM A + I +DG S G W+ +D Sbjct: 377 HGFMRMYWAKKILEWTRGPEEALAISTYLNDKYEIDGRDPSGYVGCMWSICGVHDQGWKE 436 Query: 403 ---VPYFRIFNPTIQGKRFDPQG--TFIRHWLPELNN 434 R N ++F+ T+++ ++ E+ Sbjct: 437 RPIFGKIRYMNYAGCKRKFNVDSYITYVKRFVSEIKK 473 >gi|330506500|ref|YP_004382928.1| deoxyribodipyrimidine photo-lyase [Methanosaeta concilii GP-6] gi|328927308|gb|AEB67110.1| deoxyribodipyrimidine photo-lyase (DNA photolyase)(Photoreactivating enzyme) [Methanosaeta concilii GP-6] Length = 445 Score = 133 bits (335), Expect = 6e-29, Method: Composition-based stats. Identities = 72/422 (17%), Positives = 137/422 (32%), Gaps = 37/422 (8%) Query: 3 ATTAMSVHLVWLRNDLRITDNKALYAACH---NSDAKVIAVFIATPEQWRQHGISARQSH 59 A W+ + R+ DN L A + + +F +P+ Q Sbjct: 14 AKERKGAVFYWMSREQRVADNWPLLFAQELAIREKSPLAVLFCISPQFLEATSS---QYK 70 Query: 60 FIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRR 119 F+ L +V+ L++ I + ++L S+ V+ + ++ Sbjct: 71 FMLKGLEEVETDLAELNIPLYLLSGDPAKEIPQFLQSHEAGILVS------DFSPLRIKM 124 Query: 120 DKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPV 179 + + C D ++P +L+ FR + + L + + Sbjct: 125 IWQRSIAKEVNIPCYEVDGHNIVPCWQ---ASLKQEWAAYSFRPKIHRLLDEYLTDFPAL 181 Query: 180 PAIRLTGPVTPSNIPRFFDYPFQAID----PMFPIGEQNALHILRKFCKEKVYYYVEQRD 235 A P N R + +A GE+ A L +F + + Y R+ Sbjct: 182 KAHPFPWPEAVDNDWRGAEMAIRADHISDMSWAQPGERAAKKHLNEFIDQGLVLYDSDRN 241 Query: 236 IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNEL-IWREFYRHL 294 P G S LS YL G +S ++ + + + +L EL + RE + Sbjct: 242 NPVKNGQSGLSFYLHFGQISAQRVALMA--------LSGMTDSSPFLEELVVRRELADNF 293 Query: 295 MAFYPSVCMGKPFIPWTEKI--EWNKDSHLLQAW----KQGYTGFPIIDAAMRQLNTIGW 348 + P + F W ++ + D ++ T + +AA ++ G Sbjct: 294 CYYNPHYDSVQGFPNWAQETLRQHENDPREYLYSIKELEEAKTNDELWNAAQTEMVCRGK 353 Query: 349 MHNRLRMITASFLVKDLLVDWR--IGEEYF-MSQLLDGDLASNNGGWQWAASTGNDSVPY 405 MH +RM A +++ Y LDG + G W+ +D Sbjct: 354 MHGYMRMYWAKKILEWTSSPAEAMDIAIYLNNRYELDGRDPNGYTGIAWSIGGVHDRAWK 413 Query: 406 FR 407 R Sbjct: 414 ER 415 >gi|327342154|gb|AEA50864.1| cry2-2 [Populus tremula] Length = 177 Score = 133 bits (335), Expect = 7e-29, Method: Composition-based stats. Identities = 39/179 (21%), Positives = 71/179 (39%), Gaps = 6/179 (3%) Query: 8 SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67 S +VW R DLRI DN AL AA D V VFI P++ Q ++ SL Sbjct: 4 SKTIVWFRRDLRIEDNPALAAAAR--DGCVFPVFIWCPKEEGQFYPGRVSRWWLKQSLAH 61 Query: 68 VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127 + +SL G + + ++ L T++ +N Y+ + RD ++++L Sbjct: 62 LGQSLKSLGAELVLIKTHS---TVVALLDCIETIGATRVVFNHLYDPVSLVRDHNIKEKL 118 Query: 128 QHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185 I +S++ +L P I + + + + + ++ P + Sbjct: 119 VELGISVQSYNGDLLYEPWEIYDERGYAFTTFEAYWDKCLHMQMEPVSHLPPWRLVPAA 177 >gi|167619332|ref|ZP_02387963.1| deoxyribodipyrimidine photolyase [Burkholderia thailandensis Bt4] Length = 170 Score = 133 bits (334), Expect = 7e-29, Method: Composition-based stats. Identities = 38/175 (21%), Positives = 78/175 (44%), Gaps = 7/175 (4%) Query: 1 MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHF 60 M + + + +VW R+DLR++D+ AL A S VI V++ E+ + + Sbjct: 1 MSSFDSTAPAVVWFRDDLRVSDHPALARAAE-SGRPVIGVYVFD-ERAGGRALGGAARWW 58 Query: 61 IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120 ++ SL + +L+ G + D + S+ +++NR+Y + D Sbjct: 59 LHGSLRALDAALAGLGGRLVLLRGDEADTFV----SFVAALGAGAVYWNRRYAFAQRAFD 114 Query: 121 KLLEKRLQH-RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADL 174 ++ L RV ++F+ S+L P I+N + Y+V+ + +A ++ Sbjct: 115 NAVQTALDARRVAVETFNASLLFEPDDIVNGDGRPYQVFGAYWRAALRRGAPPPP 169 >gi|256828229|ref|YP_003156957.1| Deoxyribodipyrimidine photo-lyase [Desulfomicrobium baculatum DSM 4028] gi|256577405|gb|ACU88541.1| Deoxyribodipyrimidine photo-lyase [Desulfomicrobium baculatum DSM 4028] Length = 452 Score = 132 bits (333), Expect = 9e-29, Method: Composition-based stats. Identities = 83/449 (18%), Positives = 143/449 (31%), Gaps = 38/449 (8%) Query: 3 ATTAMSVHLVWLRNDLRITDNKALYAA---CHNSDAKVIAVFIATPEQWRQHGISARQSH 59 A L W+ D R DN L A S V +F P+ A + Sbjct: 12 APLGQGPVLYWMHRDFRAADNWGLTYARLQALKSGQPVAVIFCLAPDFAEAT---AVHFN 68 Query: 60 FIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRR 119 F+ L + ++L ++ I F + + + VT ++ ++ Sbjct: 69 FLLDGLTKTAQTLRRQNIPFFALSGIPGLEVANFARTLKASLVVT------DFDPLRIKA 122 Query: 120 DKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPV 179 + D ++P + + M + P K L+ + Sbjct: 123 QWHKDLLSAWNQAVHEVDSRNIVPARVVSDRREFMARTLRPKIKRLLGEFLDEFPVLPMH 182 Query: 180 PAIRLTGPVTPSNIPRFFDYPFQAIDPMF--PIGEQNALHILRKFCKEKVYYYVEQRDIP 237 P T P GEQ A +L F + K+ Y R+ P Sbjct: 183 PHPWPTAVSAPDFSSLRHKIRDDGRRQALRVEPGEQPARDLLCHFLQNKLPVYA-NRNDP 241 Query: 238 AIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELI-WREFYRHLMA 296 S LS +L G+LS ++ + + ++L+ELI RE + Sbjct: 242 NQDVCSSLSAHLHFGMLSAQRAALETQACGL-----AGENVDAFLDELIVRRELSDNFCL 296 Query: 297 FYPSVCMGKPFIPWTEKI--EWNKDSHLLQAWKQ----GYTGFPIIDAAMRQLNTIGWMH 350 P + F W ++ + +D + + T P+ +AA Q+ G MH Sbjct: 297 HTPGYDTEEGFPAWAKESLHKHLRDPRPVIYSPEELEAARTHDPLWNAAQTQMLRSGKMH 356 Query: 351 NRLRMITASFLVKD---LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDS----- 402 LRM A +++ R LDG ++ G W+ +D Sbjct: 357 GYLRMYWAKKILEWSLSAADALRTAIRLNDRYSLDGRDSNGYTGIAWSIGGVHDRGWTER 416 Query: 403 --VPYFRIFNPTIQGKRFDPQGTFIRHWL 429 R N ++FD F+R W+ Sbjct: 417 PIFGKIRFMNLAGARRKFDVD-RFVRSWI 444 >gi|159043938|ref|YP_001532732.1| putative deoxyribodipyrimidine photo-lyase [Dinoroseobacter shibae DFL 12] gi|157911698|gb|ABV93131.1| putative deoxyribodipyrimidine photo-lyase [Dinoroseobacter shibae DFL 12] Length = 405 Score = 132 bits (332), Expect = 1e-28, Method: Composition-based stats. Identities = 57/208 (27%), Positives = 87/208 (41%), Gaps = 13/208 (6%) Query: 205 DPMFPIGEQNALHILRKFCKEKVYYYVEQRDIP----AIQGTSQLSPYLSIGVLSPRQCW 260 D FP L LR F + Y R+ SQLSPYL +++ + Sbjct: 4 DTAFPPTRDAGLARLRDFLPKAAGDYTRGRNYDLPEQGHPHVSQLSPYLRHRLVTEGEVL 63 Query: 261 NRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK--PFIPWTEKIEWNK 318 + + F A ++ E+ WR +++ + PSV M +++ Sbjct: 64 DAVLGRF------SLKSAEKFVQEVYWRTYWKGWLERRPSVWMAYKGGLSQALDRLHVES 117 Query: 319 D-SHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFM 377 +A +G TG DA R+L + G+MHN RM AS + L + W +G ++F+ Sbjct: 118 GFRAEWEAACKGETGIDGFDAWARELVSTGYMHNHARMWFASIWIFTLRLPWELGADFFL 177 Query: 378 SQLLDGDLASNNGGWQWAASTGNDSVPY 405 LLDGD ASN W+W A Y Sbjct: 178 RHLLDGDAASNTLSWRWVAGLQTQGKNY 205 >gi|226228098|ref|YP_002762204.1| deoxyribodipyrimidine photolyase [Gemmatimonas aurantiaca T-27] gi|226091289|dbj|BAH39734.1| deoxyribodipyrimidine photolyase [Gemmatimonas aurantiaca T-27] Length = 495 Score = 132 bits (332), Expect = 1e-28, Method: Composition-based stats. Identities = 87/457 (19%), Positives = 154/457 (33%), Gaps = 51/457 (11%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 L W+++ R+ DN L AA +D + V + SAR FI + Sbjct: 38 LYWMQSTHRLDDNWGLRAAIRTADRLKLPVVVHQGLDPTYPHASARHHTFILQGARDTAR 97 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130 GI +Q+ D +D + V +F + R +R+ R Sbjct: 98 QAEALGIHYQFVLRPQRTDDARVVDRLAARAYV--VFTDLFPTAGVRERVARFAQRVTCR 155 Query: 131 VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT----- 185 V+ DSV P + A + P L+ + ++ P + + Sbjct: 156 VLAV---DSVCTVPSGLFEKAEYAARTIRPKLARLLAHAIEPVEDHTPRSDVSTSLATSL 212 Query: 186 -------GPVTPSNIPRFFD-----------YPFQAIDPMFPIGEQNALHILRKFCKEKV 227 G + P +I + D P G A +F + + Sbjct: 213 RATVAEGGGLVPLDIAQMDDAAIARTVAGCAIDHDVCAVPMPGGSSAANARWTRFLEHGL 272 Query: 228 YYYVEQRDIPA-IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNEL- 285 Y E+R+ + +GTS+LSPYL G +S + ++ V + +++ ++ Sbjct: 273 PQYDERRNEASDGEGTSRLSPYLHFGQISSARVVREAQQAGV-----GAANLDAFVQQIT 327 Query: 286 IWREFYRHLMAFYPSVCMGKPFIPWTEKI--EWNKDS----HLLQAWKQGYTGFPIIDAA 339 WRE + P+ W ++ E D + ++ TG + +AA Sbjct: 328 TWRELSYNWCVRTPAFDQLSALPAWVQRTMQEHVNDPRPELYTRDQLERAQTGDRLWNAA 387 Query: 340 MRQLNTIGWMHNRLRMITAS---FLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAA 396 +L G +HN RM+ +D LDG A++ GG W Sbjct: 388 QTELVQEGIIHNYPRMLWGKTVLLWTRDYEDARTWLFHLNDKYALDGRDANSVGGIMWCL 447 Query: 397 STGNDS---VPYFRIFNPTIQGK---RFDPQGTFIRH 427 + P + P + +FD +G +I Sbjct: 448 GLWDRPWGNRPVWGGLRPMATARAKTKFDVEG-YIAR 483 >gi|159469690|ref|XP_001692996.1| CPH-like protein [Chlamydomonas reinhardtii] gi|158277798|gb|EDP03565.1| CPH-like protein [Chlamydomonas reinhardtii] Length = 443 Score = 132 bits (332), Expect = 1e-28, Method: Composition-based stats. Identities = 52/312 (16%), Positives = 99/312 (31%), Gaps = 56/312 (17%) Query: 8 SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGI-------------- 53 LVW RNDLR+ DN AL AC S + V+ V++ P + + G Sbjct: 42 KAALVWFRNDLRLHDNPALEQACRQS-SSVLPVYVFDPRDYGKAGYSVCLLPQTPSGFDR 100 Query: 54 -SARQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQY 112 ++ F+ ++ +++ L G L ++ + Sbjct: 101 TGPGRARFLLEAVADLRQRLRDAGSDLVVR----LGRPEAVLKELAAAVGAGAVYCQSEV 156 Query: 113 EINEVRRDKLLEKRL-QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQ 171 E++ + + L + + L + M Y FR+ + V+ Sbjct: 157 TAEEMQVEGRVRAALDRESCELRPQWGGTLFHLEDLPFRLDAMPTSYADFRERVANLKVR 216 Query: 172 ADLRSL-PVPAIRLTGPVTPSNIPRFFDYPFQAIDPM----------------------- 207 S + + V P +IP F Sbjct: 217 QLSESDGGIKGLPAGNSVEPGDIPTLQRLGFSPAAATAGAAAPGSGLGAPLQLGGGPALV 276 Query: 208 FPIGEQNALHILRKFCKE-----------KVYYYVEQRDIPAIQGTSQLSPYLSIGVLSP 256 GE AL ++ F E P+ + ++SP+L++G LSP Sbjct: 277 LRGGESEALRHMQAFIDELRRAVSGAAAAASGSGKPGAAPPSATFSCRISPWLALGCLSP 336 Query: 257 RQCWNRLKEEFV 268 R+ ++ ++++ Sbjct: 337 RRMYHEMRQQLA 348 >gi|167581247|ref|ZP_02374121.1| deoxyribodipyrimidine photolyase [Burkholderia thailandensis TXDOH] Length = 168 Score = 132 bits (332), Expect = 1e-28, Method: Composition-based stats. Identities = 38/174 (21%), Positives = 78/174 (44%), Gaps = 7/174 (4%) Query: 1 MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHF 60 M + + + +VW R+DLR++D+ AL A S VI V++ E+ + + Sbjct: 1 MSSFDSTAPAVVWFRDDLRVSDHPALARAAE-SGRPVIGVYVFD-ERAGGRALGGAARWW 58 Query: 61 IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120 ++ SL + +L+ G + D + S+ +++NR+Y + D Sbjct: 59 LHGSLRALDAALAGLGGRLVLLRGDEADTFV----SFVAALGAGAVYWNRRYAFAQRALD 114 Query: 121 KLLEKRLQH-RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQAD 173 ++ L RV ++F+ S+L P I+N + Y+V+ + +A ++ Sbjct: 115 NAVQTALDARRVAVETFNASLLFEPDDIVNGDGRPYQVFGAYWRAALRRGAPPP 168 >gi|303276170|ref|XP_003057379.1| predicted protein [Micromonas pusilla CCMP1545] gi|226461731|gb|EEH59024.1| predicted protein [Micromonas pusilla CCMP1545] Length = 431 Score = 131 bits (330), Expect = 2e-28, Method: Composition-based stats. Identities = 84/425 (19%), Positives = 144/425 (33%), Gaps = 35/425 (8%) Query: 8 SVHLVWLRNDLRITDNKALYAACHNSDA---KVIAVFIATPEQWRQHGISARQSHFIYAS 64 + L+W+++ R + N+AL AC ++ V+AVF + G AR F+Y Sbjct: 2 THVLLWVQSAQRASHNEALELACARANVHGVPVVAVF-GGTAGFPGGGSGARHLRFMYEG 60 Query: 65 LLQVQKSLSQ-KGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLL 123 L +++ +L++ +G+ D I +R ++ + Y R + + Sbjct: 61 LCELEDALARTRGVRLLGFAGEVPDVVIAA------SRRAVEVVTDAGYTRTLRRWREKV 114 Query: 124 EKRLQHRVICKSFDD-SVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAI 182 +Q D + L PG P ++ L + + + Sbjct: 115 AGGVQCATTEVECDVVAPLYAPGGGAGRGEPAAATLRPKIWPRLEALASREATTTTLALA 174 Query: 183 RLTGPVTPS------NIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDI 236 + F P GE A L F ++ Y +R+ Sbjct: 175 ASGAEEALELVGGAAAMAAFPRLPVPPCPGYHAGGEAEAHRKLEVFLSRRLDDYASKRND 234 Query: 237 PAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNEL-IWREFYRHLM 295 P + S LSP++ G +S R E + +L+EL I RE + + Sbjct: 235 PGLGLQSHLSPHIHYGQISVVYVTRRALE-VKRRDPRHARSVDVFLDELVIRRELAINFV 293 Query: 296 AFYPSVCMGKPFIPWT---------EKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTI 346 P W + W+ ++G T + +AA R+L T Sbjct: 294 LNNPKYDSYDGLPRWARITLADHAGDARRWSYTREEF---ERGLTHDALWNAAQRELLTS 350 Query: 347 GWMHNRLRMITASF---LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSV 403 G HN +RM A +D WR+ E LDG S+ G W + Sbjct: 351 GKQHNYVRMYWAKKILEWSEDPAEAWRVAIELNNKYSLDGRDPSSYTGVGWCFGLHDKPF 410 Query: 404 PYFRI 408 P +I Sbjct: 411 PETQI 415 >gi|116075573|ref|ZP_01472832.1| probable deoxyribodipyrimidine photolyase [Synechococcus sp. RS9916] gi|116066888|gb|EAU72643.1| probable deoxyribodipyrimidine photolyase [Synechococcus sp. RS9916] Length = 321 Score = 131 bits (330), Expect = 2e-28, Method: Composition-based stats. Identities = 63/255 (24%), Positives = 107/255 (41%), Gaps = 8/255 (3%) Query: 165 LIQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAID---PMFPIGEQNALHILRK 221 +++ V L P P + + + F + G A H L++ Sbjct: 1 MLEQPVPPPLAWDPAPGDLSRDFDDRQALAQLLETQFPEAEGELSPLQGGRTAAEHQLKR 60 Query: 222 FCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSW 281 + Y R+ + LSP++ GVL+ + + + + + + GA Sbjct: 61 ---VEAKRYGRSRNHLDG-AVTGLSPWIRHGVLTLAEVRDAVFAQLNERHQRRDDGA-KL 115 Query: 282 LNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMR 341 +NEL WR+F++ + + T + L ++G TG +DA R Sbjct: 116 INELGWRDFWQRMWSDLGDGINDDQEALNTGHDPASYARSLPTDIREGNTGLACMDAFQR 175 Query: 342 QLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGND 401 +L T GW+HN RM A+++V V W+ G ++F+ LLDGD ASN+ WQW AS+ + Sbjct: 176 ELVTHGWLHNHARMWMAAYVVHWRRVHWKAGADWFLEHLLDGDPASNHLSWQWVASSFSH 235 Query: 402 SVPYFRIFNPTIQGK 416 +F N K Sbjct: 236 KPYFFNRDNLERYSK 250 >gi|92429522|gb|ABD93505.2| DNA photolyase protein [Physalis sp. TA1367] Length = 190 Score = 131 bits (330), Expect = 2e-28, Method: Composition-based stats. Identities = 43/195 (22%), Positives = 76/195 (38%), Gaps = 12/195 (6%) Query: 12 VWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHG-----ISARQSHFIYASLL 66 VW RNDLR+ DN+ L AA HN V+ V+ P + + ++ F+ S+ Sbjct: 1 VWFRNDLRVHDNECLNAA-HNESMSVLPVYCFDPRDYGKSSSGFDKTGPYRATFLIESVA 59 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 ++K+L +G L ++ +R+ +EV+ ++ +E Sbjct: 60 DLKKNLQARGSDLVVR----IGKPETVLVELAKAVGAEAVYAHREVSYDEVKGEEKIEGV 115 Query: 127 LQ-HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPA-IRL 184 ++ V K F S L + M Y FR+ + ++ + +L + Sbjct: 116 MKDEGVDVKFFWGSTLYHVDDLPFKLEGMPTNYGGFREKVKGLEIRKTIEALDQMRGLPA 175 Query: 185 TGPVTPSNIPRFFDY 199 G V P IP D Sbjct: 176 RGDVEPGEIPSLVDL 190 >gi|147791052|emb|CAN68022.1| hypothetical protein VITISV_003623 [Vitis vinifera] Length = 212 Score = 131 bits (330), Expect = 2e-28, Method: Composition-based stats. Identities = 41/208 (19%), Positives = 83/208 (39%), Gaps = 12/208 (5%) Query: 12 VWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHG-----ISARQSHFIYASLL 66 VW RNDLR+ DN+ L +A + S ++ V+ P + + ++ F+ S+ Sbjct: 7 VWFRNDLRVHDNECLNSASNES-MSMLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVS 65 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 ++++L ++G L ++ +R+ +EV+ ++ +E Sbjct: 66 DLRQNLQKRGSDLVVR----IGKPETVLVELAKAVGADAIYAHREVSHDEVKGEEKIEAA 121 Query: 127 LQ-HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSL-PVPAIRL 184 ++ V K F S L + QM Y F++ + ++ + +L + + Sbjct: 122 MKEEGVEXKYFWGSTLYHVDDLPFKMEQMPTNYGGFKEKVKGLEIRKTIATLDQLRGLPA 181 Query: 185 TGPVTPSNIPRFFDYPFQAIDPMFPIGE 212 G V IP D + +F IG Sbjct: 182 RGDVEAGEIPSLLDLGKTVLGWIFYIGR 209 >gi|40556144|ref|NP_955229.1| CNPV206 putative photolyase [Canarypox virus] gi|40233969|gb|AAR83552.1| CNPV206 putative photolyase [Canarypox virus] Length = 472 Score = 131 bits (329), Expect = 3e-28, Method: Composition-based stats. Identities = 88/437 (20%), Positives = 148/437 (33%), Gaps = 32/437 (7%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 L W+ D RI DN AL A + I + I H ++R F+ L ++ + Sbjct: 31 LYWMVRDQRIQDNWALIYAQRIALHLKIPLRICFCIVPGFHTTTSRHFSFLLDGLKEIAE 90 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130 + I F + Y + +T F R E + K + L + Sbjct: 91 ECIKLSIGFNAVYGLPNVLIPSIIKKYKVGVVITDFFPLRVPE----KLIKQVTSVLPDK 146 Query: 131 VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTP 190 V+ D ++P + + + I ++ L PV GP + Sbjct: 147 VVFIQVDAHNIVPCWEASHKQEYGART----LRKKINGMLDTYLTEFPVITKHPYGPFSV 202 Query: 191 SNIPR---FFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSP 247 S FD + P G + A +L F K ++ Y + P + S LSP Sbjct: 203 SIANNKGVEFDDTVHPVSWAVP-GSKAAFKVLDDFLKNRLAAYESDHNNPTCEALSNLSP 261 Query: 248 YLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPF 307 +L G +S ++ + E I PKS + +I RE + + + Sbjct: 262 WLHFGHISAQRV---VLETLKYKSIHPKSVSVFLDEIIIRRELADNFCYYNKRYDSIEST 318 Query: 308 IPWTEKI------EWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASF- 360 W + + K + L+ ++ T P+ ++A Q+ +G MH+ LRM A Sbjct: 319 HSWARETLEAHVNDRRKYIYSLKQLERAETHDPLWNSAQIQMVRLGKMHSFLRMYWAKKI 378 Query: 361 --LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSV-------PYFRIFNP 411 + R LDG + G W+ +D R N Sbjct: 379 LEWTRSPKEALRYSIYLNDKYELDGTDPNGYVGCMWSICGLHDRAWSERPIFGKVRYMNY 438 Query: 412 TIQGKRFDPQGTFIRHW 428 K+FD FI + Sbjct: 439 EGTKKKFDVNA-FISKY 454 >gi|91762575|ref|ZP_01264540.1| DNA photolyase-like protein [Candidatus Pelagibacter ubique HTCC1002] gi|91718377|gb|EAS85027.1| DNA photolyase-like protein [Candidatus Pelagibacter ubique HTCC1002] Length = 380 Score = 131 bits (329), Expect = 3e-28, Method: Composition-based stats. Identities = 50/203 (24%), Positives = 92/203 (45%), Gaps = 11/203 (5%) Query: 207 MFPIGEQNALHILRKFCKEKVYYYVEQRDIP----AIQGTSQLSPYLSIGVLSPRQCWNR 262 +F A+ L F ++ + Y + R+ TS LSPY++ G+++ + ++ Sbjct: 2 IFEASRAKAVDKLTNFIEQNLSDYSKLRNFDFGPSNRSNTSCLSPYITHGIINELEVVDK 61 Query: 263 LKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHL 322 ++F + ++ E++WR +++ + P+V K E+ + + Sbjct: 62 SLKKF------SFAKNEKFIQEVLWRVYWKGWLELRPNVWSDYLIELGKFKGEFKNNQNY 115 Query: 323 LQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLD 382 L A +G T + + +L ++HN RM AS + L + W++G E+FM L D Sbjct: 116 LDAI-EGKTNIDCFNEWVIELKENNYLHNHTRMWFASIWIFTLELPWQLGAEFFMQHLFD 174 Query: 383 GDLASNNGGWQWAASTGNDSVPY 405 GD ASN GW+W A Y Sbjct: 175 GDAASNTLGWRWVAGVQTQGKHY 197 >gi|168024934|ref|XP_001764990.1| PHR1 AtPHR1-like type 2 CPD DNA photolyase [Physcomitrella patens subsp. patens] gi|162683799|gb|EDQ70206.1| PHR1 AtPHR1-like type 2 CPD DNA photolyase [Physcomitrella patens subsp. patens] Length = 495 Score = 131 bits (329), Expect = 3e-28, Method: Composition-based stats. Identities = 80/443 (18%), Positives = 143/443 (32%), Gaps = 33/443 (7%) Query: 8 SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67 + W+ D R DN AL A H + K + V +A AR F+ L Sbjct: 27 GPVVYWMSRDHRSRDNWALLHAVHQAREKGVPVAVAFNLVESFLEARARHFGFMLRGLRV 86 Query: 68 VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKL--LEK 125 V+++L I F + + + E+L V Y + R + + Sbjct: 87 VEQNLKAVNIPFFLFRGNPVETIPEFLKKCNASLLVM------DYSSLRIGRQWRNGVCE 140 Query: 126 RLQHRVICKSFDDSVLLPPGSILNH-ALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL 184 + V D ++P + + L + L + + P Sbjct: 141 NVASSVAVAEVDAHNVVPVWRASDKLEYGARTIRNKINNQLAEFLNEYPVLENPGKPWEA 200 Query: 185 TGPVTPSNIPRFFD---YPFQAIDPMF-PIGEQNALHIL----RKFCKEKVYYYVEQRDI 236 P T + + + + + GE AL L + F ++ YV R+ Sbjct: 201 GAPDTIDWDALIAEVSRFGSEVPEVTWCEAGEDAALEALAGKSKGFVNIRIRNYV-NRND 259 Query: 237 PAIQ-GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLM 295 P+ G S LSPYL G +S ++C ++ + + E + H Sbjct: 260 PSKPTGLSGLSPYLHYGHISAQRCALEARKVRKVHTKSVDAFLEELIVRGGLAENFCHYQ 319 Query: 296 AFYPSVCMGKPFIPWTEKIEWNKDSHLLQ---AWKQGYTGFPIIDAAMRQLNTIGWMHNR 352 Y ++ + + +I ++ + G T + +AA ++ G MH Sbjct: 320 PNYDNLKGAWGWAQESLRIHAKDKREVVYTESELEAGKTHDKLWNAAQLEMVYYGKMHGF 379 Query: 353 LRMITASF---LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDS------- 402 +RM A + RI LDG + G W+ +D Sbjct: 380 MRMYWAKKILEWTESPEEALRIAIYLNDKYELDGRDPNGYVGCMWSICGIHDQGWKERPV 439 Query: 403 VPYFRIFNPTIQGKRFDPQGTFI 425 R N ++F+ G +I Sbjct: 440 FGKIRYMNFNGCKRKFNVDG-YI 461 >gi|302336786|ref|YP_003801992.1| DNA photolyase FAD-binding protein [Spirochaeta smaragdinae DSM 11293] gi|301633971|gb|ADK79398.1| DNA photolyase FAD-binding protein [Spirochaeta smaragdinae DSM 11293] Length = 453 Score = 130 bits (328), Expect = 3e-28, Method: Composition-based stats. Identities = 72/443 (16%), Positives = 137/443 (30%), Gaps = 44/443 (9%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 L W++ R N AL A ++ + + + + G R F+ + Q++ Sbjct: 23 LYWMQQSQRSRYNHALEYALGEANRRSLPLLVLFVVSRDYLGAGRRHYRFLLEGIEQLEV 82 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130 L+ +GI F E + ++ Y R + Sbjct: 83 DLADRGIGFLLKIGDPPGIVAE------FAADAALVVFDTGYT-RLQRSWRKAAAAGSFC 135 Query: 131 VICKSFDDSVLLPPGSILNHALQ-------MYKVYTPFRKALIQNLVQADLRSLPVPAIR 183 + +++P + + + + + TP +Q L + + Sbjct: 136 APVMEVESDLVVP---VRTASGKEEYSAATIRRKITPLLFRFMQPLKRQSAKIDSTALAG 192 Query: 184 LTGPVTPSNIPRFFDYPFQAIDP--MFPIGEQNALHILRKFC-KEKVYYYVEQRDIPAIQ 240 + + ++P G A L F + + E+R+ P+ + Sbjct: 193 RADGLDSKAAEELLRFSQPEVEPVSWIHGGSVEAHRRLDAFITSGTLERFHEERNDPSKE 252 Query: 241 GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPS 300 G S +SPYL G +S + R E P G ++L ELI R FY Sbjct: 253 GLSCMSPYLHYGQISALEIALRASEH-------PGPGCEAFLEELIIRRELAFNFVFYNR 305 Query: 301 VCMGKPFIPWTEKIEWNKDSHLLQ-------AWKQGYTGFPIIDAAMRQLNTIGWMHNRL 353 +P + + + ++ T P +AA R+L G MH + Sbjct: 306 FYDSFEALPRWAREDLEAHEGDKREVLYDDAQLEEAKTHDPYWNAAQRELTHKGKMHGYM 365 Query: 354 RMITASFLVKDLLVDWRIGEEYF---MSQLLDGDLASNNGGWQWAASTGNDSV------P 404 RM +++ E LDG + G W + Sbjct: 366 RMYWGKKILEWSASPREAFERALRLNDRYSLDGRDPNGYTGVAWCFGKHDRPWASRPVFG 425 Query: 405 YFRIFNPTIQGKRFDPQGTFIRH 427 R N ++FD ++++ Sbjct: 426 KIRYMNDRGLERKFD-IASYVKQ 447 >gi|118175518|gb|ABK76277.1| CPD photolyase [Dunaliella salina] Length = 529 Score = 130 bits (328), Expect = 3e-28, Method: Composition-based stats. Identities = 92/480 (19%), Positives = 157/480 (32%), Gaps = 72/480 (15%) Query: 4 TTAMSVHLVWLRNDLRITDNKALYAACHNS-----------------------------D 34 + + W+ D+R++DN AL C + Sbjct: 46 NSPTPPVVYWMSRDMRVSDNWALLQGCQEALQRLQLASHADTAAAAAAATAAHSSPALAQ 105 Query: 35 AKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWL 94 ++ F P+ G AR F+ L +++ L Q I F + D + + Sbjct: 106 PPLVVAFNLVPQFL---GAGARSFCFMLKGLRELETKLRQFNIPFYLLRGQPEDTIPQLV 162 Query: 95 DSYCLQQRVTKLFYNRQYEINEV--RRDKLLEKRLQHRVI-CKSFDDSVLLPPGSILNHA 151 D+ V+ Y + + + + +LQ + + + D ++P N Sbjct: 163 DALRAGLVVS------DYSPLRLSKQWKQQVAAKLQAKGVGFQVVDAHNVVPAKIASNKR 216 Query: 152 LQMYKVYTPFRKALIQNL----VQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDP- 206 + P + L+ L + A + P TP + P +A Sbjct: 217 EYAARTIRPKIEKLLPEFLIEFPNQGLPPIMPTAGQGPHPPTPIDWPALLAEVTEAGAAV 276 Query: 207 ----MFPIGEQNALHILRK---FCKE-KVYYYVEQRDIPA-IQGTSQLSPYLSIGVLSPR 257 GE A L F ++ Y +R+ P+ G S LSPYL G LS Sbjct: 277 PEVDWITPGEAAARAALDGSQGFLTTPRIAQYHVKRNDPSCTTGLSNLSPYLHFGQLSA- 335 Query: 258 QCWNRLKEEFVDLLIKPKSGAFSWLNELI-WREFYRHLMAFYPSVCMGKPFIPWTEKIE- 315 R E L + + +L ELI RE + P P + ++ Sbjct: 336 ---QRAALEASKLRSRHREAVDRYLEELIVRRELADNFCEHCPDYDKLVPGTAYDWALKS 392 Query: 316 ---WNKDSHLLQAWKQ----GYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVD 368 +D + +Q G+TG + +A +L G MH +RM A +++ Sbjct: 393 LEKHKRDPRPITYTRQQLESGHTGDDLWNAGQMELVRQGKMHGYIRMYWAKKILEWSGTP 452 Query: 369 WRIGE---EYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFD-PQGTF 424 E LDG S G W+ + +D R I+ +D +G F Sbjct: 453 EEAVENAIYLNDKWSLDGRDPSGYTGVMWSVAGVHDRAWIDRPIYGKIRVMTYDGCKGKF 512 >gi|47227913|emb|CAF97542.1| unnamed protein product [Tetraodon nigroviridis] Length = 508 Score = 130 bits (328), Expect = 3e-28, Method: Composition-based stats. Identities = 81/438 (18%), Positives = 139/438 (31%), Gaps = 26/438 (5%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVF-IATPEQWRQHGISARQSHFIYASLLQVQ 69 L W+ D R+ DN AL A + + + + + + R F+ L +V Sbjct: 75 LYWMLRDHRVQDNWALIHARRLALEEKVPLHVCVCLHVPKSQLSTLRHYSFLLKGLEEVA 134 Query: 70 KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH 129 GI F + D ++ Q ++ E D ++K+L Sbjct: 135 AECKALGIQFHLLRGPAGDLLPGFVSE--QQLGAVVTDFSPLREPLTWLED--VKKKLPK 190 Query: 130 RVICKSFDDSVLLPPGSILNHALQMYKVYTP-FRKALIQNLVQADL-RSLPVPAIRLTGP 187 V D ++P + K L + L L P A R P Sbjct: 191 DVPLIQVDAHNIVPCWVASPKLEYAARTIRGKITKQLPEFLTDFPLVEKHPHAATRTAKP 250 Query: 188 VTPSNIPRFFDYPFQAIDPMFP-IGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246 V + + + G L +L F ++ + QR+ P SQLS Sbjct: 251 VDWRELLSSLGVDRTVGETEWARPGAAAGLAMLESFIDVRLKRFDSQRNDPNAAALSQLS 310 Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP 306 P++ G +S ++ +++ L + S + + + Y SV Sbjct: 311 PWIRFGHVSAQRVALQVQRGGRKLGVGVSSFIEELVVRRELTDNFCFYNEKYDSVEGAYE 370 Query: 307 FIPWTEKIEWNKDSHLLQAWKQ----GYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLV 362 + T K + KD ++ T + +AA Q+ G MH LRM A ++ Sbjct: 371 WARKTLK-DHAKDKRPYIYTREQLEKAETHDKLWNAA--QVVREGKMHGFLRMYWAKKIL 427 Query: 363 KDLLVDWRIGEEYF---MSQLLDGDLASNNGGWQWAASTGNDS-------VPYFRIFNPT 412 + LDG + G W+ +D R N Sbjct: 428 EWTPSPEEALASALYLNDRYELDGQDPNGFVGCMWSICGIHDQGWAERPVFGKIRYMNYK 487 Query: 413 IQGKRFDPQGTFIRHWLP 430 ++FD F R + P Sbjct: 488 GCLRKFDV-AAFERKYGP 504 >gi|317968593|ref|ZP_07969983.1| deoxyribodipyrimidine photolyase [Synechococcus sp. CB0205] Length = 302 Score = 130 bits (328), Expect = 4e-28, Method: Composition-based stats. Identities = 56/248 (22%), Positives = 100/248 (40%), Gaps = 10/248 (4%) Query: 168 NLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKV 227 + + +P + + F ++ P+ G A +LR+ + Sbjct: 1 MPLNWEEHPGDLPRQFSDRSALECTLQQLFPEASGSLSPI-QGGRSQADALLRR---VQP 56 Query: 228 YYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIW 287 Y + R+ + ++LSPY+ G +S + + + K + + +NEL W Sbjct: 57 ERYAKARNFLSGP-VTRLSPYIRHGAISLAEVRDAVF-----ARTKQRQASEKLINELGW 110 Query: 288 REFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIG 347 R++++ L T L +G TG +D ++L G Sbjct: 111 RDYWQRLWEQLGDGIWSDQEPLKTGHHPGAYAPELPADITEGRTGLACMDGFSQELQQTG 170 Query: 348 WMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFR 407 W+HN RM A+++V + W+ G ++F+ LLDGD ASNN WQW AS+ + +F Sbjct: 171 WLHNHARMWLAAYVVHWRRIRWQAGAQWFLRHLLDGDPASNNLSWQWVASSFSHKPYFFN 230 Query: 408 IFNPTIQG 415 N Sbjct: 231 RSNLERYS 238 >gi|307110754|gb|EFN58989.1| CPD photolyase [Chlorella variabilis] Length = 444 Score = 130 bits (328), Expect = 4e-28, Method: Composition-based stats. Identities = 80/440 (18%), Positives = 142/440 (32%), Gaps = 39/440 (8%) Query: 16 NDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQKSLSQK 75 D R+ DN AL A + + + V +A ARQ F+ L +Q L Sbjct: 3 RDQRVRDNWALLHAAAEASKRGVPVAVAFNLVTEYLHAGARQFGFMVRGLRLMQPKLQAL 62 Query: 76 GIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHRVICKS 135 I + D +E + + L + + R + +V Sbjct: 63 NIPLFLLKG----DPLETVPQLVKDTGASLLVT--DFAPLRLGRHWREGVAAKIKVPFHE 116 Query: 136 FDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPSNIPR 195 D ++P + + P + + + + P P + Sbjct: 117 VDAHNVVPVWVASDKREYAARTIRPKIHSKLPEFLTEFPQLEPQPEWSSGVTPEAVDWDA 176 Query: 196 F----FDYPFQAIDPMFP-IGEQNALHIL---RKFC--KEKVYYYVEQRDIPAI-QGTSQ 244 + + + + GE A+ L + F K ++ Y E+R+ P + S Sbjct: 177 LLAEVLERGKEVPEVRWCAPGEDAAMEALSGPKGFLGSKARLARYEEKRNDPTVPDALSG 236 Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELI-WREFYRHLMAFYPSVCM 303 LSPYL G LSP R E K+ +L ELI RE + + P+ Sbjct: 237 LSPYLHFGHLSP----QRAAVEAARNKAVHKASVEGFLEELIVRRELADNYCFYVPNYDS 292 Query: 304 GKPFIPWTEKI--EWNKDSHLLQAWKQ----GYTGFPIIDAAMRQLNTIGWMHNRLRMIT 357 W + + D ++ G T + +AA ++ G MH +RM Sbjct: 293 LDAAYDWARQTLNDHRGDKREHVYTREQFEKGQTHDKLWNAAQAEMVHFGKMHGFMRMYW 352 Query: 358 ASFLVKDLLVDWR--IGEEYF-MSQLLDGDLASNNGGWQWAASTGNDS-------VPYFR 407 A +++ + LDG A+ G W+ + +D R Sbjct: 353 AKKILEWSASPEEALEISIWLNDKYELDGRDANGYVGCMWSIAGIHDQGWAERPVFGKIR 412 Query: 408 IFNPTIQGKRFDPQGTFIRH 427 N ++FD + ++ Sbjct: 413 FMNFAGCKRKFDVE-KYVAR 431 >gi|126727584|ref|ZP_01743417.1| DNA photolyase-like protein [Rhodobacterales bacterium HTCC2150] gi|126703174|gb|EBA02274.1| DNA photolyase-like protein [Rhodobacterales bacterium HTCC2150] Length = 407 Score = 130 bits (328), Expect = 4e-28, Method: Composition-based stats. Identities = 44/204 (21%), Positives = 83/204 (40%), Gaps = 13/204 (6%) Query: 207 MFPIGEQNALHILRKFCKEKVYYYVEQRDIP----AIQGTSQLSPYLSIGVLSPRQCWNR 262 F + + +F +Y +R+ S LSP++ +++ + + Sbjct: 9 AFEPTRSAGIVRMEQFAIRTGAHYASKRNYDLGANNRSTVSALSPWIRHRLITEEEVLTQ 68 Query: 263 LKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHL 322 + S A ++ E+ WR +++ + +PSV T + + ++ L Sbjct: 69 TLARY------SPSTAMKFIQEVFWRGYFKGWLEQHPSVWNSYKQGVRTAQNRLHSNAEL 122 Query: 323 ---LQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQ 379 +G TG D R+L G++HN RM AS + L + W +G ++F++ Sbjct: 123 NADYIGAIEGRTGIACFDHWCRELVETGYLHNHARMWFASIWIFTLRLPWELGADFFLNH 182 Query: 380 LLDGDLASNNGGWQWAASTGNDSV 403 L+DGD ASN W+W Sbjct: 183 LIDGDSASNTLSWRWVGGLHTKGK 206 >gi|149928547|ref|ZP_01916775.1| probable deoxyribodipyrimidine photolyase [Limnobacter sp. MED105] gi|149822733|gb|EDM81992.1| probable deoxyribodipyrimidine photolyase [Limnobacter sp. MED105] Length = 426 Score = 130 bits (328), Expect = 4e-28, Method: Composition-based stats. Identities = 60/214 (28%), Positives = 96/214 (44%), Gaps = 17/214 (7%) Query: 208 FPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEF 267 F + AL+ L Y R+ + LSP+++ G LS R+ L E++ Sbjct: 9 FEPSRRAALNAL---ATVDPALYSRTRNFLDG-AVTGLSPWITHGYLSVREAAQLLMEKY 64 Query: 268 VDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWN--KDSHLLQA 325 + E WREF++H A +G + + W+ + L + Sbjct: 65 RLSFED------KLIFEFAWREFFKHAHA-----ELGNGILSDVRRPVWSGKYNQQLPED 113 Query: 326 WKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDL 385 ++G TG IDA + L G++HN +RM AS++V V W++G ++ + LLDGDL Sbjct: 114 IREGRTGVEAIDAGVALLYETGYLHNHVRMWIASYVVHMRKVHWKVGADWMYAHLLDGDL 173 Query: 386 ASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFD 419 ASN+ WQW A T + F N ++D Sbjct: 174 ASNHLSWQWVAGTFSHKPYVFNADNVKKYAPKWD 207 >gi|294892053|ref|XP_002773871.1| Deoxyribodipyrimidine photo-lyase, putative [Perkinsus marinus ATCC 50983] gi|239879075|gb|EER05687.1| Deoxyribodipyrimidine photo-lyase, putative [Perkinsus marinus ATCC 50983] Length = 480 Score = 130 bits (328), Expect = 4e-28, Method: Composition-based stats. Identities = 80/447 (17%), Positives = 147/447 (32%), Gaps = 52/447 (11%) Query: 19 RITDNKALYAA---CHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQKSLSQK 75 R DN AL A ++ V+ G RQ F L + K+L K Sbjct: 6 RSMDNWALLYAQNLALEGKQPLLVVYNLAIGYL---GGGLRQHVFKVGGLRVLAKNLRDK 62 Query: 76 GIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEI---NEVRRDKLLEKRLQHRVI 132 GI F+ +F + L + + + N+ D +++ + + Sbjct: 63 GISFRVDYSKDF---PKALSKMVTMLGCSHVVT--DFTPLKVNKAWEDAFIKEAERLGIR 117 Query: 133 CKSFDDSVLLPPG-----------SILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPA 181 D ++P +I + + Y+ L ++ D + + Sbjct: 118 FDQVDAHNIVPCWVASDKLEYAARTIRPRLWRNWDTYSTEFPTLHKHPYHYDGAHFEITS 177 Query: 182 IRLTGPVTPSNIPRFF---DYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPA 238 + N + D+ + + + P GE L L F K + Y + R+ P Sbjct: 178 EACFDMLLSDNEQQLLAGLDHGVKPVTKVLP-GEDAGLEHLYTFIKN-MKGYSQFRNDPT 235 Query: 239