PSIBLAST alignment of GI: 254781170 and protein with PDB id: 2j4d
>gi|150261312|pdb|2J4D|A Chain A, Cryptochrome 3 From Arabidopsis Thaliana Length = 525
>gi|150261313|pdb|2J4D|B Chain B, Cryptochrome 3 From Arabidopsis Thaliana Length = 525
Score = 232 bits (592), Expect = 8e-59, Method: Composition-based stats.
Identities = 118/456 (25%), Positives = 207/456 (45%), Gaps = 25/456 (5%)
Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQW------RQHGISARQSHFIY 62
V ++W RNDLR+ DN ALY A +SD ++ V+ P + A + F+
Sbjct: 41 VTILWFRNDLRVLDNDALYKAWSSSDT-ILPVYCLDPRLFHTTHFFNFPKTGALRGGFLM 99
Query: 63 ASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKL 122
L+ ++K+L ++G+ E L S +F +++ EV ++L
Sbjct: 100 ECLVDLRKNLMKRGLNLLIRS----GKPEEILPSLAKDFGARTVFAHKETCSEEVDVERL 155
Query: 123 LEKRLQ---HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPV 179
+ + L+ + + S + + + VYT FRK++ +P+
Sbjct: 156 VNQGLKRVGNSTKLELIWGSTMYHKDDLPFDVFDLPDVYTQFRKSVEAKCSIRSSTRIPL 215
Query: 180 PAIRLTGPVTPSNIPRFFD---YPFQAIDPMFPIGEQNALHILRKFCKEKVY---YYVEQ 233
++P P + M +G ++A K Y E
Sbjct: 216 SLGPTPSVDDWGDVPTLEKLGVEPQEVTRGMRFVGGESAGVGRVFEYFWKKDLLKVYKET 275
Query: 234 RD-IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYR 292
R+ + +++ SP+L+ G +SPR + ++ + + + L ELIWR+++R
Sbjct: 276 RNGMLGPDYSTKFSPWLAFGCISPRFIYEEVQRYEKERVANN--STYWVLFELIWRDYFR 333
Query: 293 HLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNR 352
L + P + +W++D L ++W+ TG+P+IDA M++L+T G+M NR
Sbjct: 334 FLSIKCGNSLFH-LGGPRNVQGKWSQDQKLFESWRDAKTGYPLIDANMKELSTTGFMSNR 392
Query: 353 LRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPT 412
R I SFLV+D+ +DWR+G E+F + LLD D SN G W + A GND R F+
Sbjct: 393 GRQIVCSFLVRDMGLDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGNDPRE-DRYFSIP 451
Query: 413 IQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLD 448
Q + +DP+G ++ WL +L +P + H P +
Sbjct: 452 KQAQNYDPEGEYVAFWLQQLRRLPKEKRHWPGRLMY 487