RPSBLAST alignment for GI: 254781170 and conserved domain: TIGR02766
>gnl|CDD|131813 TIGR02766, crypt_chrom_pln, cryptochrome, plant family. At least five major families of cryptochomes and photolyases share FAD cofactor binding, sequence homology, and the ability to react to short wavelengths of visible light. Photolysases are responsible for light-dependent DNA repair by removal of two types of uv-induced DNA dimerizations. Cryptochromes have other functions, often regulatory and often largely unknown, which may include circadian clock entrainment and control of development. Members of this subfamily are known so far only in plants; they may show some photolyase activity in vitro but appear mostly to be regulatory proteins that respond to blue light. Length = 475
Score = 209 bits (534), Expect = 1e-54
Identities = 141/478 (29%), Positives = 220/478 (46%), Gaps = 42/478 (8%)
Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
+VW R DLR+ DN AL AA VI VF+ PE+ Q+ ++ SL + +
Sbjct: 1 IVWFRRDLRVEDNPALAAAAR--AGPVIPVFVWAPEEEGQYYPGRVSRWWLKQSLAHLDQ 58
Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYE-INEVRRDKLLEKRLQH 129
SL G + + D++ L T+LF+N Y+ ++ VR + E
Sbjct: 59 SLRSLGTCLVTIRST---DTVAALLDCVRSTGATRLFFNHLYDPVSLVRDHRAKEVLTAQ 115
Query: 130 RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG--- 186
+ +SF+ +L P + + + + ++ F + + + LP I
Sbjct: 116 GISVQSFNADLLYEPWEVYDELGRPFTMFAAFWERCLSMPYDPESPLLPPKKIISGDVSK 175
Query: 187 -PVTPSNIPRFFDYPFQAI-DPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244
+ A+ + G NA L +F + Y + R TS
Sbjct: 176 CSADDLGFEDDSEKGSNALLARAWSPGWSNADKALTEFINGPLLEYSKNRKKADSATTSL 235
Query: 245 LSPYLSIGVLSPRQCW--------------NRLKEEFVDLLIKPKSGAFSWLNELIWREF 290
LSPYL G +S R+ + N EE V+L ++ + RE+
Sbjct: 236 LSPYLHFGEVSVRKVFHLVRMKQIAWANEGNSAGEESVNLFLR----------SIGLREY 285
Query: 291 YRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMH 350
R++ +P KP + + W D + +AW+QG TG+P++DA MR+L GW+H
Sbjct: 286 SRYISFNHP-FSHEKPLLGHLKFFPWAVDENYFKAWRQGRTGYPLVDAGMRELWATGWLH 344
Query: 351 NRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFN 410
+R+R++ +SF VK L + WR G +YF LLD DL S+ GWQ+ + + D RI N
Sbjct: 345 DRIRVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGSLPDGRELDRIDN 404
Query: 411 PTIQGKRFDPQGTFIRHWLPELNNVPTQYIH----APHSWLDKN--DLSLNYPLPIVD 462
P ++G +FDP G ++R WLPEL +PT++IH AP S L +L NYPLPIV
Sbjct: 405 PQLEGYKFDPNGEYVRRWLPELARLPTEWIHHPWDAPESVLQAAGVELGSNYPLPIVG 462