RPSBLAST alignment of GI: 254781170 and protein with PDBid: 1dnp

>1dnp_A DNA photolyase; DNA repair, electron transfer, excitation energy transfer, carbon-carbon; HET: DNA FAD MHF; 2.30A {Escherichia coli} SCOP: a.99.1.1 c.28.1.1 Length = 471
 Score =  342 bits (877), Expect = 1e-94
 Identities = 243/472 (51%), Positives = 324/472 (68%), Gaps = 3/472 (0%)

Query: 8   SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67
           + HLVW R DLR+ DN AL AAC NS A+V+A++IATP QW  H +S RQ+  I A L  
Sbjct: 1   TTHLVWFRQDLRLHDNLALAAACRNSSARVLALYIATPRQWATHNMSPRQAELINAQLNG 60

Query: 68  VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127
           +Q +L++KGI   + +  +F  S+E +   C +  VT LFYN QYE+NE  RD  +E+ L
Sbjct: 61  LQIALAEKGIPLLFREVDDFVASVEIVKQVCAENSVTHLFYNYQYEVNERARDVEVERAL 120

Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187
           ++  +C+ FDDSV+LPPG+++    +MYKV+TPF+ A ++ L +     +  P +R +G 
Sbjct: 121 RNV-VCEGFDDSVILPPGAVMTGNHEMYKVFTPFKNAWLKRLREGMPECVAAPKVRSSGS 179

Query: 188 VTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSP 247
           + PS                FP+ E+ A+  LR+FC+     Y +QRD PA++GTS+LS 
Sbjct: 180 IEPSPSITLNYPRQSFDTAHFPVEEKAAIAQLRQFCQNGAGEYEQQRDFPAVEGTSRLSA 239

Query: 248 YLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPF 307
            L+ G LSPRQC +RL  E              WLNELIWREFYRHL+ ++PS+C  +PF
Sbjct: 240 SLATGGLSPRQCLHRLLAEQPQ--ALDGGAGSVWLNELIWREFYRHLITYHPSLCKHRPF 297

Query: 308 IPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLV 367
           I WT++++W  +   LQAW++G TG+PI+DAAMRQLN+ GWMHNRLRMITASFLVKDLL+
Sbjct: 298 IAWTDRVQWQSNPAHLQAWQEGKTGYPIVDAAMRQLNSTGWMHNRLRMITASFLVKDLLI 357

Query: 368 DWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRH 427
           DWR GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG++FD +G FIR 
Sbjct: 358 DWREGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGEKFDHEGEFIRQ 417

Query: 428 WLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479
           WLPEL +VP + +H P  W  K  ++L+YP PIV+HK+A   TL  Y AA+K
Sbjct: 418 WLPELRDVPGKVVHEPWKWAQKAGVTLDYPQPIVEHKEARVQTLAAYEAARK 469