RPSBLAST alignment of GI: 254781170 and protein with PDBid: 1np7

>1np7_A DNA photolyase; protein with FAD cofactor; HET: DNA FAD; 1.90A {Synechocystis SP} SCOP: a.99.1.1 c.28.1.1 Length = 489
 Score =  336 bits (861), Expect = 8e-93
 Identities = 136/479 (28%), Positives = 225/479 (46%), Gaps = 31/479 (6%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQH-----GISARQSHFIYA 63
             LVW RNDLR+ D++ L+ A  +    + AV+   P Q+ Q           +S+F+  
Sbjct: 7   TVLVWFRNDLRLHDHEPLHRALKSGL-AITAVYCYDPRQFAQTHQGFAKTGPWRSNFLQQ 65

Query: 64  SLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLL 123
           S+  + +SL + G               + +     Q     ++Y+R+    E+  ++ L
Sbjct: 66  SVQNLAESLQKVGNKLLVTT----GLPEQVIPQIAKQINAKTIYYHREVTQEELDVERNL 121

Query: 124 EKRLQ-HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQ------ADLRS 176
            K+L    +  K +  S L  P  +      +  ++T FRK + +  +       A  + 
Sbjct: 122 VKQLTILGIEAKGYWGSTLCHPEDLPFSIQDLPDLFTKFRKDIEKKKISIRPCFFAPSQL 181

Query: 177 LPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKV---YYYVEQ 233
           LP P I+L     P       ++  +++   F  GE   L  L+ +         Y   +
Sbjct: 182 LPSPNIKLELTAPPPEFFPQINFDHRSVLA-FQGGETAGLARLQDYFWHGDRLKDYKETR 240

Query: 234 RDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRH 293
             +     +S+ SP+L++G LSPR  +  +K    + +    +    +  EL+WR+F+R 
Sbjct: 241 NGMVGADYSSKFSPWLALGCLSPRFIYQEVKRYEQERVSNDSTHWLIF--ELLWRDFFRF 298

Query: 294 LMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRL 353
           +   Y +    +      +   W +D    + W+ G TG+P++DA MR+LN  G+M NR 
Sbjct: 299 VAQKYGNKLFNRGG-LLNKNFPWQEDQVRFELWRSGQTGYPLVDANMRELNLTGFMSNRG 357

Query: 354 RMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTI 413
           R   ASFL K+L +DWR G E+F S L+D D+ SN G W + A  GND+   FR FN   
Sbjct: 358 RQNVASFLCKNLGIDWRWGAEWFESCLIDYDVCSNWGNWNYTAGIGNDARD-FRYFNIPK 416

Query: 414 QGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKN------DLSLNYPLPIVDHKKA 466
           Q +++DPQGT++RHWLPEL N+P   IH P              L ++YP P V+  ++
Sbjct: 417 QSQQYDPQGTYLRHWLPELKNLPGDKIHQPWLLSATEQKQWGVQLGVDYPRPCVNFHQS 475