RPSBLAST alignment of GI: 254781170 and protein with PDBid: 2j4d

>2j4d_A Cryptochrome 3, cryptochrome DASH; DNA-binding protein, flavoprotein, FAD, mitochondrion, plastid, chromophore, chloroplast; HET: FAD MHF; 1.9A {Arabidopsis thaliana} PDB: 2vtb_A* 2ijg_X* 2vtb_B* Length = 525

 Score =  274 bits (702), Expect = 2e-74
 Identities = 118/491 (24%), Positives = 217/491 (44%), Gaps = 27/491 (5%)

Query: 8   SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHG------ISARQSHFI 61
            V ++W RNDLR+ DN ALY A  +SD  ++ V+   P  +            A +  F+
Sbjct: 40  GVTILWFRNDLRVLDNDALYKAWSSSD-TILPVYCLDPRLFHTTHFFNFPKTGALRGGFL 98

Query: 62  YASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDK 121
              L+ ++K+L ++G+              E L S         +F +++    EV  ++
Sbjct: 99  MECLVDLRKNLMKRGLNLLIRSG----KPEEILPSLAKDFGARTVFAHKETCSEEVDVER 154

Query: 122 LLEKRLQ---HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLP 178
           L+ + L+   +    +    S +     +      +  VYT FRK++           +P
Sbjct: 155 LVNQGLKRVGNSTKLELIWGSTMYHKDDLPFDVFDLPDVYTQFRKSVEAKCSIRSSTRIP 214

Query: 179 VPAIRLTGPVTPSNIPRFFDYPFQAIDP----MFPIGEQNALHILRKFCKEK---VYYYV 231
           +            ++P       +  +      F  GE   +  + ++  +K     Y  
Sbjct: 215 LSLGPTPSVDDWGDVPTLEKLGVEPQEVTRGMRFVGGESAGVGRVFEYFWKKDLLKVYKE 274

Query: 232 EQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFY 291
            +  +     +++ SP+L+ G +SPR  +  ++    +      +  +  L ELIWR+++
Sbjct: 275 TRNGMLGPDYSTKFSPWLAFGCISPRFIYEEVQRYEKE--RVANNSTYWVLFELIWRDYF 332

Query: 292 RHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHN 351
           R L     +        P   + +W++D  L ++W+   TG+P+IDA M++L+T G+M N
Sbjct: 333 RFLSIKCGNSLF-HLGGPRNVQGKWSQDQKLFESWRDAKTGYPLIDANMKELSTTGFMSN 391

Query: 352 RLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNP 411
           R R I  SFLV+D+ +DWR+G E+F + LLD D  SN G W + A  GND     R F+ 
Sbjct: 392 RGRQIVCSFLVRDMGLDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGNDPRED-RYFSI 450

Query: 412 TIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPH--SWLDKNDLSLNYPLPIVDHKKACHH 469
             Q + +DP+G ++  WL +L  +P +  H P    ++D      +   P+    K+   
Sbjct: 451 PKQAQNYDPEGEYVAFWLQQLRRLPKEKRHWPGRLMYMDTVVPLKHGNGPMAGGSKSGGG 510

Query: 470 TLNQYYAAKKQ 480
               +   + +
Sbjct: 511 FRGSHSGRRSR 521