RPSBLAST alignment of GI: 254781170 and protein with PDBid: 3fy4
>3fy4_A 6-4 photolyase; DNA repair, clock cryptochrome; HET: MES FAD; 2.70A {Arabidopsis thaliana} Length = 537
Score = 245 bits (626), Expect = 1e-65
Identities = 131/504 (25%), Positives = 202/504 (40%), Gaps = 41/504 (8%)
Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHG---------ISARQSHFI 61
L+W R LR+ DN AL A S+ + VF+ P + F+
Sbjct: 8 LIWFRKGLRVHDNPALEYASKGSE-FMYPVFVIDPHYMESDPSAFSPGSSRAGVNRIRFL 66
Query: 62 YASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDK 121
SL + SL + G + + E L + +V +L + + D
Sbjct: 67 LESLKDLDSSLKKLGSRLLVFKG----EPGEVLVRCLQEWKVKRLCFEYDTDPYYQALDV 122
Query: 122 LLEKRLQHRVICKSFDDSVLLPPGS--ILNHALQMYKVYTPFRKALIQNLVQADLRSLPV 179
++ + S L + I + + Y F K + +
Sbjct: 123 KVKDYASSTGVEVFSPVSHTLFNPAHIIEKNGGKPPLSYQSFLKVAGEPSCAKSELVMSY 182
Query: 180 PAIRLTGPVTPSNIPR-------FFDYPFQAIDPMFPIGEQNALHILRKFCK--EKVYYY 230
++ G + I + QA F GE AL L K V +
Sbjct: 183 SSLPPIGDIGNLGISEVPSLEELGYKDDEQADWTPFRGGESEALKRLTKSISDKAWVANF 242
Query: 231 VEQRDIPAI---QGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIW 287
+ + P+ T+ +SPYL G LS R + L+ + D+ S L +L+W
Sbjct: 243 EKPKGDPSAFLKPATTVMSPYLKFGCLSSRYFYQCLQNIYKDVKKHTSP-PVSLLGQLLW 301
Query: 288 REFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIG 347
REF+ P ++I WN+D +L AW+ G TG+P IDA M QL G
Sbjct: 302 REFFYTTAFGTP-NFDKMKGNRICKQIPWNEDHAMLAAWRDGKTGYPWIDAIMVQLLKWG 360
Query: 348 WMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYF 406
WMH+ R A FL + DL + W G + F L+D D A NNG W W + + +
Sbjct: 361 WMHHLARHCVACFLTRGDLFIHWEQGRDVFERLLIDSDWAINNGNWMWLSCSSFFY-QFN 419
Query: 407 RIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLD------KNDLSLNYPLPI 460
RI++P GK++DP G +IRH+LP L ++P QYI+ P + + +YP P+
Sbjct: 420 RIYSPISFGKKYDPDGKYIRHFLPVLKDMPKQYIYEPWTAPLSVQTKANCIVGKDYPKPM 479
Query: 461 VDHKKA---CHHTLNQYYAAKKQS 481
V H A C + + YA K+
Sbjct: 480 VLHDSASKECKRKMGEAYALNKKM 503