RPSBLAST alignment of GI: 254781170 and SCOP domain: d1u3da1

Alignment

 Score =  180 bits (456), Expect = 3e-46
 Identities = 92/282 (32%), Positives = 142/282 (50%), Gaps = 11/282 (3%)

Query: 208 FPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEF 267
           +  G  N    L  F    +  Y + R       TS LSP+L  G +S R+ ++ ++ + 
Sbjct: 16  WSPGWSNGDKALTTFINGPLLEYSKNRRKADSATTSFLSPHLHFGEVSVRKVFHLVRIKQ 75

Query: 268 VDLLI----KPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLL 323
           V          +     +L  +  RE+ R++  F       +P +   +   W  D +  
Sbjct: 76  VAWANEGNEAGEESVNLFLKSIGLREYSRYIS-FNHPYSHERPLLGHLKFFPWAVDENYF 134

Query: 324 QAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDG 383
           +AW+QG TG+P++DA MR+L   GW+H+R+R++ +SF VK L + WR G +YF   LLD 
Sbjct: 135 KAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFVKVLQLPWRWGMKYFWDTLLDA 194

Query: 384 DLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAP 443
           DL S+  GWQ+   T  DS  + RI NP  +G +FDP G ++R WLPEL+ +PT +IH P
Sbjct: 195 DLESDALGWQYITGTLPDSREFDRIDNPQFEGYKFDPNGEYVRRWLPELSRLPTDWIHHP 254

Query: 444 HSWLDKN------DLSLNYPLPIVDHKKACHHTLNQYYAAKK 479
            +  +        +L  NYPLPIV   +A            +
Sbjct: 255 WNAPESVLQAAGIELGSNYPLPIVGLDEAKARLHEALSQMWQ 296

SCOP domain information

class: All alpha proteins
fold: Cryptochrome/photolyase FAD-binding domain
superfamily: Cryptochrome/photolyase FAD-binding domain
family: Cryptochrome/photolyase FAD-binding domain
domain: Cryptochrome C-terminal domain
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]