HHsearch results for GI: 254781171 and protein with PDBid: 2nwl_A

>2nwl_A GLTPH, glutamate symport protein; alpha helical, membrane protein, helical hairpin, unwound region, transport protein; HET: PLM; 2.96A {Pyrococcus horikoshii} PDB: 2nww_A* 1xfh_A* 2nwx_A* 3kbc_A
Probab=100.00  E-value=0  Score=635.74  Aligned_cols=402  Identities=25%  Similarity=0.374  Sum_probs=363.5

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHH
Q ss_conf             984564015445449999999999999999996887-----578887878999999999999999999999983253113
Q gi|254781171|r    1 MSLGKMITLDKQQKAYLLYVSSILIGIFSGTTDYVI-----FNETAEFIVNVFVRIFKFISLPLISLSLIVSLSKCVPEQ   75 (420)
Q Consensus         1 m~~~~~~~~~k~~k~~i~l~~~illGi~~G~~~~~~-----~~~~~~~iG~ifi~lLkmiviPLIf~sii~~I~~l~~~~   75 (420)
                      |.++|   ..+|.++..+++.|+++|+++|...+..     ..+|.+++||+|+|++||+++|+||+|++.|++++++ +
T Consensus         1 m~~~~---k~~~~~l~~~ilia~v~Gi~~G~~~~~~~~~~~~~~~l~~~G~lFi~lLkm~vvPlI~~sii~~i~~l~~-~   76 (422)
T 2nwl_A            1 MGLYR---KYIEYPVLIKILIGLILGAIVGLILGHYGYAHAVHTYVKPFGDLFVRLLKMLVMPIVFASLVVGAASISP-A   76 (422)
T ss_dssp             ------------CCCTTHHHHHHHHHHHHHHHHHHTTTHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTT-T
T ss_pred             CCHHH---HHHCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-H
T ss_conf             92888---7522779999999999999999996542212789999999999999999999999999999999975340-1


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCC---CCCCCCCHHHHHHHHCCCCHHHHHHHHCCCHHHH
Q ss_conf             4665899999999999999999987501234864101100001---2224476898999853664045765511320535
Q gi|254781171|r   76 GMGKLWGKTVFYTMLTTMLAASVALCTYGLISPSNMITKPDVA---VNIGKMNFWNYVANLIPNNVVAPFLESQVIGILL  152 (420)
Q Consensus        76 ~~gki~~~ti~~~~~tt~iA~~igl~~~~l~~Pg~~~~~~~~~---~~~~~~~~~~~l~~liP~Ni~~ala~gniL~iiv  152 (420)
                      +.||++.|++.||+.++++|+.+|+.++.+++||.+.......   ...+..++.|++.+++|+|++++++++|++|+++
T Consensus        77 ~~gri~~k~i~~~~~tt~~a~~lgl~~~~~~~pg~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~Ni~~a~~~~~~l~vi~  156 (422)
T 2nwl_A           77 RLGRVGVKIVVYYLLTSAFAVTLGIIMARLFNPGAGIHLAVGGQQFQPHQAPPLVHILLDIVPTNPFGALANGQVLPTIF  156 (422)
T ss_dssp             THHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCCSCCCCCCCCCC-----CCTHHHHGGGSCSCHHHHHHTCCHHHHHH
T ss_pred             HCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHCCCCCCCCHHHHHHHHCCCCHHHHHHCCCCCHHHH
T ss_conf             00107999999999999999999999998438775400121044305534774999999838897799964588630368


Q ss_pred             HHHHHHHHHHHHCCCCC------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHH
Q ss_conf             56664213774046453------017999999999999999898798977787899999998501121110124689999
Q gi|254781171|r  153 ISGSIGIATHFITDKHI------KSSTIVFFEGIHSIFLTITNWVMKIIPIALGSFIAVTILQFKKGLNISGLGEYLSVV  226 (420)
Q Consensus       153 fai~~Gia~~~~~~k~~------~~~~~~~~~~~~~i~~~ii~~im~l~Pigvf~lia~~~~~~~~~~~l~~l~~~l~~~  226 (420)
                      ||+++|+|+.+.++++.      .+++++++|+++++++|+++|+|+++|+|+|+++++..++++.+ .+..+++|+.++
T Consensus       157 fai~~Gia~~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~iv~~i~~l~Pigvf~l~a~~~~~~g~~-~l~~l~~~~~~~  235 (422)
T 2nwl_A          157 FAIILGIAITYLMNSENEKVRKSAETLLDAINGLAEAMYKIVNGVMQYAPIGVFALIAYVMAEQGVH-VVGELAKVTAAV  235 (422)
T ss_dssp             HHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSHHHHHHHHHHHHHTTTGGG-CCTHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHH-HHHHHHHHHHHH
T ss_conf             9888899999840100366678889999999999999999999999886999999999987302346-788899999999


Q ss_pred             HHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCC
Q ss_conf             99999999999876644125041100110024788988851765507799999973178998899899999987378850
Q gi|254781171|r  227 ILSNLIQGFIVLPVILYIKGFNPLTIVKGMFPALAVAFFSKSSAGTLPVTMRTAEKNLNISPEVSRSILPFCTSINMNGC  306 (420)
Q Consensus       227 ~~~~~i~~~v~~~~i~~~~~~np~~~~k~~~~~~~~Af~T~SS~atlP~~l~~~~~~lgv~~~i~~fviPlG~tinm~G~  306 (420)
                      ++++++|.+++++++.+++|+||++|+|+.+|++++||+|+||+||+|+++||+| |+|+||++++|++|+|+|+|||||
T Consensus       236 ~~~~~l~~~~~~~l~~~~~~~~p~~~~~~~~~~~~~Af~T~SS~atlP~~l~~~~-~~gv~~~i~~fvlPlg~t~n~~G~  314 (422)
T 2nwl_A          236 YVGLTLQILLVYFVLLKIYGIDPISFIKHAKDAMLTAFVTRSSSGTLPVTMRVAK-EMGISEGIYSFTLPLGATINMDGT  314 (422)
T ss_dssp             HHHHHHHHHHTHHHHHHHTTCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH-TTTCCHHHHHHHHHHHTTSCCHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHH-HCCCCHHHCCEECCCHHHCCCCCH
T ss_conf             9999999999999999995888898898999999999971563214579999999-859783334531563110268845


Q ss_pred             HHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCH------HHHHHHHHHHHHH
Q ss_conf             5677999999742369788956799999999999842138864159999999997549999------9999999657764
Q gi|254781171|r  307 AAFICITLIYVMQNNGIEATFSTLFLWILMASVISAIGTAGVPMGCFFLSASLLTNMGIPI------NIMSMILPFYSIV  380 (420)
Q Consensus       307 ai~~~~~~~f~a~~~gi~l~~~~~~~~i~~~~v~as~g~~gvPg~~~v~~~~vl~~~glP~------~~~~lli~id~i~  380 (420)
                      |+|++++++|++|.||++++.+++. .+++.++++|+|++|+|||+++.+..+++.+|+|.      +++++++++||++
T Consensus       315 al~~~~~~if~a~~~g~~lt~~~~~-~~~~~~~l~s~g~~gvPg~~~v~~~~vl~~~glP~~~~~~~~~i~liiaid~l~  393 (422)
T 2nwl_A          315 ALYQGVCTFFIANALGSHLTVGQQL-TIVLTAVLASIGTAGVPGAGAIMLAMVLHSVGLPLTDPNVAAAYAMILGIDAIL  393 (422)
T ss_dssp             HHHHHHHHHHHHHHHTCCCCSSCCH-HHHHHHHHHHHHSCSSSSHHHHHHHHHHHHHTCCTTSTTHHHHHHHHHTTHHHH
T ss_pred             HHHHHHHHHHHHHHHCCCCCHHHHH-HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHC
T ss_conf             8999999999999948999989999-999999999984478616799999999998499876411566899999798660


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             15678999877899999999873000134
Q gi|254781171|r  381 DMFETTLNVWSDSCVTVIVNKSYPKSSDH  409 (420)
Q Consensus       381 D~~rT~~NV~gd~~~a~iv~~~~~~~~~~  409 (420)
                      ||+||++||+||++++.+++|+|++.|++
T Consensus       394 D~~rT~~NV~gd~~~a~iv~k~~g~ld~~  422 (422)
T 2nwl_A          394 DMGRTMVNVTGDLTGTAIVAKTEGTLVPR  422 (422)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHC------
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHCCCCCC
T ss_conf             66189994987899999999973888899