Query gi|254781171|ref|YP_003065584.1| hypothetical protein CLIBASIA_05390 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 420
No_of_seqs 141 out of 2777
Neff 7.3
Searched_HMMs 23785
Date Wed Jun 1 01:50:14 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254781171.hhm -d /home/congqian_1/database/pdb/pdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2nwl_A GLTPH, glutamate sympor 100.0 0 0 635.7 34.3 402 1-409 1-422 (422)
2 1s2x_A CAG-Z; CAG pathogenicit 4.6 1.3E+02 0.0057 9.0 0.4 26 126-151 130-155 (206)
3 3org_A CMCLC; transporter, tra 4.6 1.4E+02 0.0057 9.0 10.5 25 78-102 98-122 (632)
4 1whc_A RSGI RUH-027, UBA/UBX 3 4.3 1.4E+02 0.0061 8.9 1.6 21 274-295 10-30 (64)
5 1wji_A Tudor domain containing 4.0 1.6E+02 0.0067 8.6 2.9 29 266-295 2-30 (63)
6 1o26_A Thymidylate synthase TH 3.5 1.1E+02 0.0044 9.6 -1.3 22 284-305 151-172 (232)
7 2knc_A Integrin alpha-IIB; tra 3.4 1.9E+02 0.0082 8.2 4.2 26 217-242 10-35 (54)
8 1rqt_A L8, 50S ribosomal prote 3.3 2E+02 0.0084 8.1 1.5 12 276-287 22-33 (37)
9 2k1a_A Integrin alpha-IIB; sin 3.3 2E+02 0.0085 8.1 4.0 32 218-249 9-42 (42)
10 2zy9_A Mg2+ transporter MGTE; 3.2 2.1E+02 0.0088 8.0 6.1 61 1-61 365-435 (473)
No 1
>2nwl_A GLTPH, glutamate symport protein; alpha helical, membrane protein, helical hairpin, unwound region, transport protein; HET: PLM; 2.96A {Pyrococcus horikoshii} PDB: 2nww_A* 1xfh_A* 2nwx_A* 3kbc_A
Probab=100.00 E-value=0 Score=635.74 Aligned_cols=402 Identities=25% Similarity=0.374 Sum_probs=363.5
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHH
Q ss_conf 984564015445449999999999999999996887-----578887878999999999999999999999983253113
Q gi|254781171|r 1 MSLGKMITLDKQQKAYLLYVSSILIGIFSGTTDYVI-----FNETAEFIVNVFVRIFKFISLPLISLSLIVSLSKCVPEQ 75 (420)
Q Consensus 1 m~~~~~~~~~k~~k~~i~l~~~illGi~~G~~~~~~-----~~~~~~~iG~ifi~lLkmiviPLIf~sii~~I~~l~~~~ 75 (420)
|.++| ..+|.++..+++.|+++|+++|...+.. ..+|.+++||+|+|++||+++|+||+|++.|++++++ +
T Consensus 1 m~~~~---k~~~~~l~~~ilia~v~Gi~~G~~~~~~~~~~~~~~~l~~~G~lFi~lLkm~vvPlI~~sii~~i~~l~~-~ 76 (422)
T 2nwl_A 1 MGLYR---KYIEYPVLIKILIGLILGAIVGLILGHYGYAHAVHTYVKPFGDLFVRLLKMLVMPIVFASLVVGAASISP-A 76 (422)
T ss_dssp ------------CCCTTHHHHHHHHHHHHHHHHHHTTTHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTT-T
T ss_pred CCHHH---HHHCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-H
T ss_conf 92888---7522779999999999999999996542212789999999999999999999999999999999975340-1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCC---CCCCCCCHHHHHHHHCCCCHHHHHHHHCCCHHHH
Q ss_conf 4665899999999999999999987501234864101100001---2224476898999853664045765511320535
Q gi|254781171|r 76 GMGKLWGKTVFYTMLTTMLAASVALCTYGLISPSNMITKPDVA---VNIGKMNFWNYVANLIPNNVVAPFLESQVIGILL 152 (420)
Q Consensus 76 ~~gki~~~ti~~~~~tt~iA~~igl~~~~l~~Pg~~~~~~~~~---~~~~~~~~~~~l~~liP~Ni~~ala~gniL~iiv 152 (420)
+.||++.|++.||+.++++|+.+|+.++.+++||.+....... ...+..++.|++.+++|+|++++++++|++|+++
T Consensus 77 ~~gri~~k~i~~~~~tt~~a~~lgl~~~~~~~pg~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~Ni~~a~~~~~~l~vi~ 156 (422)
T 2nwl_A 77 RLGRVGVKIVVYYLLTSAFAVTLGIIMARLFNPGAGIHLAVGGQQFQPHQAPPLVHILLDIVPTNPFGALANGQVLPTIF 156 (422)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCCSCCCCCCCCCC-----CCTHHHHGGGSCSCHHHHHHTCCHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHCCCCCCCCHHHHHHHHCCCCHHHHHHCCCCCHHHH
T ss_conf 00107999999999999999999999998438775400121044305534774999999838897799964588630368
Q ss_pred HHHHHHHHHHHHCCCCC------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHH
Q ss_conf 56664213774046453------017999999999999999898798977787899999998501121110124689999
Q gi|254781171|r 153 ISGSIGIATHFITDKHI------KSSTIVFFEGIHSIFLTITNWVMKIIPIALGSFIAVTILQFKKGLNISGLGEYLSVV 226 (420)
Q Consensus 153 fai~~Gia~~~~~~k~~------~~~~~~~~~~~~~i~~~ii~~im~l~Pigvf~lia~~~~~~~~~~~l~~l~~~l~~~ 226 (420)
||+++|+|+.+.++++. .+++++++|+++++++|+++|+|+++|+|+|+++++..++++.+ .+..+++|+.++
T Consensus 157 fai~~Gia~~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~iv~~i~~l~Pigvf~l~a~~~~~~g~~-~l~~l~~~~~~~ 235 (422)
T 2nwl_A 157 FAIILGIAITYLMNSENEKVRKSAETLLDAINGLAEAMYKIVNGVMQYAPIGVFALIAYVMAEQGVH-VVGELAKVTAAV 235 (422)
T ss_dssp HHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSHHHHHHHHHHHHHTTTGGG-CCTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHH-HHHHHHHHHHHH
T ss_conf 9888899999840100366678889999999999999999999999886999999999987302346-788899999999
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCC
Q ss_conf 99999999999876644125041100110024788988851765507799999973178998899899999987378850
Q gi|254781171|r 227 ILSNLIQGFIVLPVILYIKGFNPLTIVKGMFPALAVAFFSKSSAGTLPVTMRTAEKNLNISPEVSRSILPFCTSINMNGC 306 (420)
Q Consensus 227 ~~~~~i~~~v~~~~i~~~~~~np~~~~k~~~~~~~~Af~T~SS~atlP~~l~~~~~~lgv~~~i~~fviPlG~tinm~G~ 306 (420)
++++++|.+++++++.+++|+||++|+|+.+|++++||+|+||+||+|+++||+| |+|+||++++|++|+|+|+|||||
T Consensus 236 ~~~~~l~~~~~~~l~~~~~~~~p~~~~~~~~~~~~~Af~T~SS~atlP~~l~~~~-~~gv~~~i~~fvlPlg~t~n~~G~ 314 (422)
T 2nwl_A 236 YVGLTLQILLVYFVLLKIYGIDPISFIKHAKDAMLTAFVTRSSSGTLPVTMRVAK-EMGISEGIYSFTLPLGATINMDGT 314 (422)
T ss_dssp HHHHHHHHHHTHHHHHHHTTCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH-TTTCCHHHHHHHHHHHTTSCCHHH
T ss_pred HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHH-HCCCCHHHCCEECCCHHHCCCCCH
T ss_conf 9999999999999999995888898898999999999971563214579999999-859783334531563110268845
Q ss_pred HHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCH------HHHHHHHHHHHHH
Q ss_conf 5677999999742369788956799999999999842138864159999999997549999------9999999657764
Q gi|254781171|r 307 AAFICITLIYVMQNNGIEATFSTLFLWILMASVISAIGTAGVPMGCFFLSASLLTNMGIPI------NIMSMILPFYSIV 380 (420)
Q Consensus 307 ai~~~~~~~f~a~~~gi~l~~~~~~~~i~~~~v~as~g~~gvPg~~~v~~~~vl~~~glP~------~~~~lli~id~i~ 380 (420)
|+|++++++|++|.||++++.+++. .+++.++++|+|++|+|||+++.+..+++.+|+|. +++++++++||++
T Consensus 315 al~~~~~~if~a~~~g~~lt~~~~~-~~~~~~~l~s~g~~gvPg~~~v~~~~vl~~~glP~~~~~~~~~i~liiaid~l~ 393 (422)
T 2nwl_A 315 ALYQGVCTFFIANALGSHLTVGQQL-TIVLTAVLASIGTAGVPGAGAIMLAMVLHSVGLPLTDPNVAAAYAMILGIDAIL 393 (422)
T ss_dssp HHHHHHHHHHHHHHHTCCCCSSCCH-HHHHHHHHHHHHSCSSSSHHHHHHHHHHHHHTCCTTSTTHHHHHHHHHTTHHHH
T ss_pred HHHHHHHHHHHHHHHCCCCCHHHHH-HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHC
T ss_conf 8999999999999948999989999-999999999984478616799999999998499876411566899999798660
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 15678999877899999999873000134
Q gi|254781171|r 381 DMFETTLNVWSDSCVTVIVNKSYPKSSDH 409 (420)
Q Consensus 381 D~~rT~~NV~gd~~~a~iv~~~~~~~~~~ 409 (420)
||+||++||+||++++.+++|+|++.|++
T Consensus 394 D~~rT~~NV~gd~~~a~iv~k~~g~ld~~ 422 (422)
T 2nwl_A 394 DMGRTMVNVTGDLTGTAIVAKTEGTLVPR 422 (422)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHC------
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHCCCCCC
T ss_conf 66189994987899999999973888899
No 2
>1s2x_A CAG-Z; CAG pathogenicity island, type IV secretion system, unknown function; 1.90A {Helicobacter pylori} SCOP: a.47.3.1
Probab=4.62 E-value=1.3e+02 Score=9.03 Aligned_cols=26 Identities=23% Similarity=0.680 Sum_probs=16.4
Q ss_pred HHHHHHHHCCCCHHHHHHHHCCCHHH
Q ss_conf 89899985366404576551132053
Q gi|254781171|r 126 FWNYVANLIPNNVVAPFLESQVIGIL 151 (420)
Q Consensus 126 ~~~~l~~liP~Ni~~ala~gniL~ii 151 (420)
+.|.+.+..|..-.-+|.+|||+++-
T Consensus 130 isdlvasylpreylppfidgnmmgva 155 (206)
T 1s2x_A 130 ISDLVASYLPREYLPPFIDGNMMGVA 155 (206)
T ss_dssp HHHHHHTTSCGGGCCTTCCHHHHHHH
T ss_pred HHHHHHHHCCHHHCCCCCCCCCCEEE
T ss_conf 99999974848657986378501011
No 3
>3org_A CMCLC; transporter, transport protein; 3.50A {Cyanidioschyzon merolae}
Probab=4.60 E-value=1.4e+02 Score=9.02 Aligned_cols=25 Identities=20% Similarity=0.092 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 6589999999999999999998750
Q gi|254781171|r 78 GKLWGKTVFYTMLTTMLAASVALCT 102 (420)
Q Consensus 78 gki~~~ti~~~~~tt~iA~~igl~~ 102 (420)
+++..|+...-.+.+.++...|..+
T Consensus 98 ~~~~~~~~~~k~~~~~~~ig~G~s~ 122 (632)
T 3org_A 98 SALELRVLFAKALGLICAIGGGLPV 122 (632)
T ss_dssp GGGSHHHHHHHHHHHHHHHHTTCSC
T ss_pred CCCCHHHHHHHHHHHHHHHHCCCCC
T ss_conf 6573989999999999999818777
No 4
>1whc_A RSGI RUH-027, UBA/UBX 33.3 kDa protein; UBA domain, structural genomics, riken structural genomics/proteomics initiative, unknown function; NMR {Mus musculus} SCOP: a.5.2.1
Probab=4.35 E-value=1.4e+02 Score=8.86 Aligned_cols=21 Identities=5% Similarity=0.097 Sum_probs=8.5
Q ss_pred HHHHHHHHHCCCCCHHHHHHHH
Q ss_conf 7999999731789988998999
Q gi|254781171|r 274 PVTMRTAEKNLNISPEVSRSIL 295 (420)
Q Consensus 274 P~~l~~~~~~lgv~~~i~~fvi 295 (420)
|-.++.+.+ ||.+++.+.-.+
T Consensus 10 ~~~l~~L~~-MGF~~~~a~~AL 30 (64)
T 1whc_A 10 LTALESLIE-MGFPRGRAEKAL 30 (64)
T ss_dssp CCHHHHHHT-TTCCHHHHHHHH
T ss_pred HHHHHHHHH-CCCCHHHHHHHH
T ss_conf 999999999-599999999999
No 5
>1wji_A Tudor domain containing protein 3; UBA domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=4.05 E-value=1.6e+02 Score=8.65 Aligned_cols=29 Identities=28% Similarity=0.373 Sum_probs=14.8
Q ss_pred HCCCCCHHHHHHHHHHHCCCCCHHHHHHHH
Q ss_conf 517655077999999731789988998999
Q gi|254781171|r 266 SKSSAGTLPVTMRTAEKNLNISPEVSRSIL 295 (420)
Q Consensus 266 T~SS~atlP~~l~~~~~~lgv~~~i~~fvi 295 (420)
|+++...=+-.++.+.+ ||.+++.+.-.+
T Consensus 2 s~~~s~vd~~~v~~L~~-MGF~~~~a~~AL 30 (63)
T 1wji_A 2 SSGSSGVDEKALKHITE-MGFSKEASRQAL 30 (63)
T ss_dssp CSSCCSSCHHHHHHHHT-TTCCHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHH-CCCCHHHHHHHH
T ss_conf 88877569999999999-699999999999
No 6
>1o26_A Thymidylate synthase THYX; TM0449, thymidylate synthase complementing protein, structural genomics, JCSG, PSI; HET: FAD UMP PGE; 1.60A {Thermotoga maritima} SCOP: d.207.1.1 PDB: 1kq4_A 1o25_A* 1o24_A* 1o27_A* 1o28_A* 1o29_A* 1o2a_A* 1o2b_A* 3g4a_A* 3g4c_A*
Probab=3.51 E-value=1.1e+02 Score=9.60 Aligned_cols=22 Identities=23% Similarity=0.271 Sum_probs=14.2
Q ss_pred CCCCHHHHHHHHHHHHHHCCCC
Q ss_conf 7899889989999998737885
Q gi|254781171|r 284 LNISPEVSRSILPFCTSINMNG 305 (420)
Q Consensus 284 lgv~~~i~~fviPlG~tinm~G 305 (420)
.|++++-|++++|.+...+.--
T Consensus 151 ~Gva~E~AR~vLP~~~~T~~~~ 172 (232)
T 1o26_A 151 SGVPREVARIVLPLNLYTRFFW 172 (232)
T ss_dssp TTCCHHHHGGGSBTTBEEEEEE
T ss_pred CCCCHHHHHHHCCCCCEEEEEE
T ss_conf 6997489998677764799999
No 7
>2knc_A Integrin alpha-IIB; transmembrane signaling, coiled coil, protein structure, alternative splicing, calcium, cell adhesion; NMR {Homo sapiens}
Probab=3.43 E-value=1.9e+02 Score=8.16 Aligned_cols=26 Identities=19% Similarity=0.031 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 01246899999999999999987664
Q gi|254781171|r 217 SGLGEYLSVVILSNLIQGFIVLPVIL 242 (420)
Q Consensus 217 ~~l~~~l~~~~~~~~i~~~v~~~~i~ 242 (420)
.+...++..++.++++..++++.+-.
T Consensus 10 vP~WiIivsv~~GlLlL~ll~~~LwK 35 (54)
T 2knc_A 10 IPIWWVLVGVLGGLLLLTILVLAMWK 35 (54)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCEEHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 87304699999999999999999998
No 8
>1rqt_A L8, 50S ribosomal protein L7/L12; protein L7/L12,ribosome,; NMR {Escherichia coli} SCOP: a.108.1.1
Probab=3.34 E-value=2e+02 Score=8.08 Aligned_cols=12 Identities=17% Similarity=0.396 Sum_probs=0.0
Q ss_pred HHHHHHHCCCCC
Q ss_conf 999997317899
Q gi|254781171|r 276 TMRTAEKNLNIS 287 (420)
Q Consensus 276 ~l~~~~~~lgv~ 287 (420)
.++..|+|+||+
T Consensus 22 LisaMEeKFGVs 33 (37)
T 1rqt_A 22 LISAMEEKFGVS 33 (37)
T ss_dssp HHHHHHHHTTCC
T ss_pred HHHHHHHHHCCC
T ss_conf 999999984877
No 9
>2k1a_A Integrin alpha-IIB; single-PASS transmembrane segment, alternative splicing, calcium, cell adhesion, cleavage on PAIR of basic residues; NMR {Homo sapiens} PDB: 2k9j_A
Probab=3.32 E-value=2e+02 Score=8.07 Aligned_cols=32 Identities=22% Similarity=0.180 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH--HHCCCCC
Q ss_conf 1246899999999999999987664--4125041
Q gi|254781171|r 218 GLGEYLSVVILSNLIQGFIVLPVIL--YIKGFNP 249 (420)
Q Consensus 218 ~l~~~l~~~~~~~~i~~~v~~~~i~--~~~~~np 249 (420)
+...++..++.+.++....++.+-. |+.|..|
T Consensus 9 P~WiIivsv~~Gll~L~ll~~~lwKcGFFKR~rp 42 (42)
T 2k1a_A 9 PIWWVLVGVLGGLLLLTILVLAMWKVGFFKRNRP 42 (42)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHTTTTCCCCC
T ss_pred CEEHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
T ss_conf 7414799999999999999999998273246898
No 10
>2zy9_A Mg2+ transporter MGTE; membrane protien, metal transport; 2.94A {Thermus thermophilus HB8} PDB: 2yvx_A
Probab=3.24 E-value=2.1e+02 Score=7.99 Aligned_cols=61 Identities=11% Similarity=0.000 Sum_probs=0.0
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 984564015445449999999999999999996887----------5788878789999999999999999
Q gi|254781171|r 1 MSLGKMITLDKQQKAYLLYVSSILIGIFSGTTDYVI----------FNETAEFIVNVFVRIFKFISLPLIS 61 (420)
Q Consensus 1 m~~~~~~~~~k~~k~~i~l~~~illGi~~G~~~~~~----------~~~~~~~iG~ifi~lLkmiviPLIf 61 (420)
++.+....-+.++-++.-+..|++.|+++|...... ..-.+..+..+.+..+-=..+|+++
T Consensus 365 la~g~i~~~~~~~~~~kE~~vg~~~G~~~~~i~~~~~~~~~~~~l~~vi~~a~~~~~~~a~~~G~~iP~~l 435 (473)
T 2zy9_A 365 LATRDLDLRDWRRVFLKEMGVGLLLGLTLSFLLVGKVYWDGHPLLLPVVGVSLVLIVFFANLVGAMLPFLL 435 (473)
T ss_dssp HHTTSSCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHTTHHHHH
T ss_pred HHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99715882139999999999999999999999999999933529999999999999999999999999999
Done!