RPS-BLAST 2.2.22 [Sep-27-2009]
Database: CddA
21,609 sequences; 6,263,737 total letters
Searching..................................................done
Query= gi|254781171|ref|YP_003065584.1| hypothetical protein
CLIBASIA_05390 [Candidatus Liberibacter asiaticus str. psy62]
(420 letters)
>gnl|CDD|144095 pfam00375, SDF, Sodium:dicarboxylate symporter family.
Length = 387
Score = 257 bits (660), Expect = 3e-69
Identities = 127/387 (32%), Positives = 213/387 (55%), Gaps = 11/387 (2%)
Query: 23 ILIGIFSGTTDYVIFNETA---EFIVNVFVRIFKFISLPLISLSLIVSLSKCVPEQGMGK 79
ILIG+ G + F E A + + ++F+ + K + +PL+ S++ ++ + +GK
Sbjct: 5 ILIGLVLGVLLGLFFPEVAGWLKPLGDIFINLLKMLVVPLVFFSIVSGIASLGDGKKLGK 64
Query: 80 LWGKTVFYTMLTTMLAASVALCTYGLISPSNMITKPDVAVNIGKM---NFWNYVANLIPN 136
L GKT+ Y ++TT +AA + L L P + A + + +++ N+IP+
Sbjct: 65 LGGKTLLYFLVTTAIAAIIGLLVALLFQPGVGLLISAAAESAQASESPSLLDFLLNIIPS 124
Query: 137 NVVAPFLESQVIGILLISGSIGIATHFITDKHIKSSTIVFFEGIHSIFLTITNWVMKIIP 196
N+ A E V+ +++ + GIA + +K + F E ++ I + + NWVMK+ P
Sbjct: 125 NIFAALAEGNVLQVIVFAILFGIALAALGEKG--KPLLKFLESLNEIIMKVVNWVMKLAP 182
Query: 197 IALGSFIAVTILQFKKGLNISGLGEYLSVVILSNLIQGFIVLPVILYI-KGFNPLTIVKG 255
I + + IA T+ F G + LG+++ V L+ I F+V P++L G NP +K
Sbjct: 183 IGVFALIANTVGTFGLGT-LGSLGKFVLTVYLALAIHLFVVYPLLLKFLTGLNPFKFLKK 241
Query: 256 MFPALAVAFFSKSSAGTLPVTMRTAEKNLNISPEVSRSILPFCTSINMNGCAAFICITLI 315
+ PAL AF + SSA TLPVT+ AEKNL +S ++ +LP +INM+G A ++ + I
Sbjct: 242 ILPALLTAFSTASSAATLPVTLECAEKNLGVSKSIASFVLPLGATINMDGTAIYLAVAAI 301
Query: 316 YVMQNNGIEATFSTLFLWILMASVISAIGTAGVPMGCFFLSASLLTNMGIPINIMSMILP 375
++ Q G++ + L L IL A +++IG AGVP G A +L+ +G+P+ +++IL
Sbjct: 302 FIAQAYGVDLSLGQLLLLILTA-TLASIGAAGVPGGGLVALALVLSALGLPVEGIALILA 360
Query: 376 FYSIVDMFETTLNVWSDSCVTVIVNKS 402
I+DMF T LNV D+ VIV K
Sbjct: 361 IDRILDMFRTALNVTGDAVAAVIVAKL 387
>gnl|CDD|31492 COG1301, GltP, Na+/H+-dicarboxylate symporters [Energy production
and conversion].
Length = 415
Score = 204 bits (520), Expect = 5e-53
Identities = 106/393 (26%), Positives = 205/393 (52%), Gaps = 12/393 (3%)
Query: 23 ILIGIFSGTTDYVIFNETAEFIV-----NVFVRIFKFISLPLISLSLIVSLSKCVPEQGM 77
+LIG+ G + E I ++F+++ K I +PL+ +L++ ++ + +
Sbjct: 12 VLIGLILGILVGLFLPELGAAIYLKPLGDIFIKLIKMIIIPLVFFTLVLGIASLGDLKKL 71
Query: 78 GKLWGKTVFYTMLTTMLAASVALCTYGLISP---SNMITKPDVAVNIGKMNFWNYVANLI 134
G+L GKT+ Y ++TT LA ++ L ++ P N+ +++ +++ ++I
Sbjct: 72 GRLGGKTLIYFLVTTTLAIAIGLVVANVLQPGAGINIDPATLDTGAESEVSILDFLLDII 131
Query: 135 PNNVVAPFLESQVIGILLISGSIGIATHFITDKHIKSSTIVFFEGIHSIFLTITNWVMKI 194
P N+ E V+ IL + G+A + +K K FE + +TN+VM++
Sbjct: 132 PTNIFGALAEGNVLQILFFAILFGLALAALGEKG-KPPVENLFESLSEAMFKVTNFVMRL 190
Query: 195 IPIALGSFIAVTILQFKKGLNISGLGEYLSVVILSNLIQGFIVLPVILY-IKGFNPLTIV 253
PI + +A T+ ++ G ++ LG+ + V L L+ F+VL ++L + GF+P +
Sbjct: 191 APIGVFGLMAFTVAKYGFG-SLLSLGKLVLAVYLGLLLFVFVVLGLLLKLLSGFSPFKFL 249
Query: 254 KGMFPALAVAFFSKSSAGTLPVTMRTAEKNLNISPEVSRSILPFCTSINMNGCAAFICIT 313
+ + AL +AF + SS TLPVTM AEK+L + + ++P + N++G A + +
Sbjct: 250 RYISEALLLAFSTSSSEATLPVTMEKAEKSLGVPKSIVSFVVPLGYTFNLDGTAIYQTLA 309
Query: 314 LIYVMQNNGIEATFSTLFLWILMASVISAIGTAGVPMGCFFLSASLLTNMGIPINIMSMI 373
+++ Q GI + +L+A ++++ G AGVP G + A+ L+++G+P+ +++I
Sbjct: 310 ALFIAQAYGIPLSLGQQLTLLLVA-MLASKGAAGVPGGGLVVLAATLSSVGLPLEGLALI 368
Query: 374 LPFYSIVDMFETTLNVWSDSCVTVIVNKSYPKS 406
L +DM T NV D+ TV+V K +
Sbjct: 369 LGIDRFLDMARTATNVTGDAVATVVVAKWEGEE 401
>gnl|CDD|38991 KOG3787, KOG3787, KOG3787, Glutamate/aspartate and neutral amino
acid transporters [Amino acid transport and metabolism].
Length = 507
Score = 156 bits (397), Expect = 9e-39
Identities = 120/461 (26%), Positives = 206/461 (44%), Gaps = 46/461 (9%)
Query: 1 MSLGKMITLDKQQKAYLLYVSSILIGIFSGTT--DYVIFNETAEFIV---NVFVRIFKFI 55
++ + ++ LL VS +++G+ G + + +I + +R+ K +
Sbjct: 4 GRGERVRSFLRENLLLLLTVSGVVLGVLLGFLLRPLSLSPDEIMYISFPGELLMRMLKMM 63
Query: 56 SLPLISLSLIVSLSKCVPEQGMGKLWGKTVFYTMLTTMLAASVALCTYGLISPSNMITK- 114
LPLI SLI L+ + G+L + V Y M TT++A + + +I P + K
Sbjct: 64 ILPLIVSSLISGLASLDAKAS-GRLGMRAVVYYMSTTIIAVILGIALVLIIHPGDPTKKN 122
Query: 115 --PDVAVNIGKMN----FWNYVANLIPNNVV-APFLESQVIGILLISGSIGIATHFITDK 167
+ ++ F + + N+ P N+V A F + Q + S G AT K
Sbjct: 123 ELGREGLIDSNVSTLDTFLDLIRNMFPENLVQATFQQYQTKYKPVTKASPGNATEEALPK 182
Query: 168 HIKSST-----------------------------IVFFEGIHSIFLTITNWVMKIIPIA 198
+ T + FF ++ + + +W+M P+
Sbjct: 183 GVPGYTDGMNVLGLVVFCIVFGIVIGKLGEKGQVLVDFFNSLNEAIMKLVSWIMWYSPVG 242
Query: 199 LGSFIAVTILQFKK-GLNISGLGEYLSVVILSNLIQGFIVLPVILY-IKGFNPLTIVKGM 256
+ IA IL+ + G+ LG Y+ VIL I GFIVLP+I + + NP + G+
Sbjct: 243 ILFLIAGKILEMEDLGVTARQLGMYVVTVILGLFIHGFIVLPLIYFVVTRKNPFRFIAGL 302
Query: 257 FPALAVAFFSKSSAGTLPVTMRTAEKNLNISPEVSRSILPFCTSINMNGCAAFICITLIY 316
ALA AF + SS+ TLP+T + E+NL + V+R +LP +INM+G A + + I+
Sbjct: 303 LQALATAFGTASSSATLPITFKCLEENLGVDKRVTRFVLPVGATINMDGTALYEAVAAIF 362
Query: 317 VMQNNGIEATFSTLFLWILMASVISAIGTAGVPMGCFFLSASLLTNMGIPINIMSMILPF 376
+ Q N +E +F + I + + ++IG AGVP +LT +G+P +S+I
Sbjct: 363 IAQLNNVELSFGQIVT-ISITATAASIGAAGVPQAGLVTMLIVLTAVGLPTKDISLIFAV 421
Query: 377 YSIVDMFETTLNVWSDSCVTVIVNKSYPKSSDHPENAIVQN 417
++D TT+NV D+ IV K D + +
Sbjct: 422 DWLLDRLRTTVNVLGDALGAGIVEHLSKKELDAADAQELAE 462
>gnl|CDD|32008 COG1823, COG1823, Predicted Na+/dicarboxylate symporter [General
function prediction only].
Length = 458
Score = 114 bits (286), Expect = 5e-26
Identities = 85/381 (22%), Positives = 173/381 (45%), Gaps = 27/381 (7%)
Query: 32 TDYVIFNETAE---FIVNVFVRIFKFISLPLISLSLIVSLSKCVPEQGMGKLWGKTVFYT 88
TD + ET + + N +VR+ + I +PL+ +S++ +++K +GK+ T+
Sbjct: 54 TDSPVLKETIDWFNIVGNGYVRLLQMIVMPLVFISILSAIAKLDNASKLGKISLLTIGTL 113
Query: 89 MLTTMLAASVALCT---YGL-----------ISPSNMITKPDVAVNIGKMNFWNYVANLI 134
+ TT +AA + + +GL + + I + + + +LI
Sbjct: 114 LFTTAIAALIGILVALLFGLTAEGLVQGDAETARISEIQTY--VGKVADLTIPQLILSLI 171
Query: 135 PNNVVAPFL---ESQVIGILLISGSIGIATHFITDKHIKSSTIV--FFEGIHSIFLTITN 189
P N A + +I +++ + +GIA ++ K + + + SI + +
Sbjct: 172 PKNPFADLTGANPTSIIAVVIFAAFLGIAALKLSKKDPEKGERFKAAIDTLQSIVMKLVR 231
Query: 190 WVMKIIPIALGSFIAVTILQFKKGLNISGLGEYLSVVILSNLIQGFIVLPVILYIKGFNP 249
V+++ P + + + + +I LG ++ V + F+V ++L + G NP
Sbjct: 232 LVIRLTPYGVLALMTKVVATSNLE-DIIKLGSFI-VASYIAIFIMFVVHGILLALNGVNP 289
Query: 250 LTIVKGMFPALAVAFFSKSSAGTLPVTMRTAEKNLNISPEVSRSILPFCTSINMNGCAA- 308
+ K ++P L AF S+SSA T+P+ + T + L + ++ F +I NGCA
Sbjct: 290 IKYFKKVWPVLTFAFTSRSSAATIPLNIETQTRKLGVPEGIANFAASFGATIGQNGCAGI 349
Query: 309 FICITLIYVMQNNGIEATFSTLFLWILMASVISAIGTAGVPMGCFFLSASLLTNMGIPIN 368
+ + + V GI ++ IS+ G AGV G F + +L+ +G+P+
Sbjct: 350 YPAMLAVMVAPTVGINPLDPHFIATLIGVVTISSFGVAGVGGGATFAALIVLSALGLPVA 409
Query: 369 IMSMILPFYSIVDMFETTLNV 389
++ +++ ++DM T LNV
Sbjct: 410 LVGLLISIEPLIDMGRTALNV 430
>gnl|CDD|33431 COG3633, SstT, Na+/serine symporter [Amino acid transport and
metabolism].
Length = 407
Score = 79.5 bits (196), Expect = 2e-15
Identities = 96/396 (24%), Positives = 164/396 (41%), Gaps = 25/396 (6%)
Query: 20 VSSILIGIFSGTTDYVIFNETAE---FIVNVFVRIFKFISLPLISLSLIVSLSKCVPEQG 76
V ILIG+ G +I AE + +FV K ++ P++ L+++ S ++G
Sbjct: 17 VKQILIGLVLGILLAIISPPAAEAVGLLGTLFVGALKAVA-PVLVFILVMA-SIANHKKG 74
Query: 77 MGKLWGKTVFYTMLTTMLAASVALCTYGLISPSNMITKPDVAVNIGKMNFWNYVANLIPN 136
+ +L T AA VA+ PS ++ + +L+ +
Sbjct: 75 QKTNIRPIIVLYLLGTFSAALVAVIA-SFAFPSTLVLASSAGDISPPSGIVEVLKSLLMS 133
Query: 137 NVVAP---FLESQVIGILLISGSIGIATHFITDKHIKSSTIVFFEGIHSIFLTITNWVMK 193
V P L + IGIL + +G+A +H +T + I V++
Sbjct: 134 LVDNPINALLNANYIGILAWAIGLGLAL-----RHASDTTKNLVNDLSEAVSKIVKVVIR 188
Query: 194 IIPIALGSFIAVTILQFKKGLN-ISGLGEYLSVVILSNLIQGFIVLPVILYIK-GFNPLT 251
PI + +A T+ + G + G + L+V++ L +V P+I+Y K NP
Sbjct: 189 FAPIGIFGLVASTLAE--TGFGALWGYAQLLAVLVGCMLFVALVVNPLIVYWKIRRNPYP 246
Query: 252 IVKGMFPALAV-AFFSKSSAGTLPVTMRTAEKNLNISPEVSRSILPFCTSINMNGCAAFI 310
+V V AFF++SSA +PV M +K L + + +P +INM G A I
Sbjct: 247 LVLTCLRESGVTAFFTRSSAANIPVNMALCKK-LGLDEDTYSVSIPLGATINMAGAAITI 305
Query: 311 CITLIYVMQNNGIEATFSTLFLWILMASVISAIGTAGVPMGCFFLSASLLTNMGIPINIM 370
+ + + GI T L ++AS + A G +GV G L + GI ++
Sbjct: 306 TVLTLAAVHTLGIPVDLPTALLLSVVAS-VCACGASGVAGGSLLLIPLACSLFGISNDVA 364
Query: 371 SMILPFYSIV----DMFETTLNVWSDSCVTVIVNKS 402
++ I+ D ET LN +D T ++
Sbjct: 365 MQVVAVGFIIGVLQDSAETALNSSTDVLFTAAACQA 400
>gnl|CDD|73326 cd02759, MopB_Acetylene-hydratase, The MopB_Acetylene-hydratase CD
contains acetylene hydratase (Ahy) and other related
proteins. The acetylene hydratase of Pelobacter
acetylenicus is a tungsten iron-sulfur protein involved
in the fermentation of acetylene to ethanol and acetate.
Members of this CD belong to the molybdopterin_binding
(MopB) superfamily of proteins..
Length = 477
Score = 29.8 bits (67), Expect = 1.6
Identities = 17/90 (18%), Positives = 32/90 (35%), Gaps = 5/90 (5%)
Query: 308 AFICITLIYVMQNNGIEATFSTLFLWILMASVISAIGTAGVP---MGCFFLSASLLTNMG 364
A I L Q NG + + + L + ++ G +P + L +
Sbjct: 286 ACIQWGLAIDQQKNGTQTSRAIAILRAITGNLDVPGGNLLIPYPVKMLIVFGTNPLASYA 345
Query: 365 IPINIMS--MILPFYSIVDMFETTLNVWSD 392
++ L F +VD+F T + +D
Sbjct: 346 DTAPVLEALKALDFIVVVDLFMTPTAMLAD 375
>gnl|CDD|34360 COG4745, COG4745, Predicted membrane-bound mannosyltransferase
[Posttranslational modification, protein turnover,
chaperones].
Length = 556
Score = 28.4 bits (63), Expect = 4.2
Identities = 14/82 (17%), Positives = 31/82 (37%), Gaps = 9/82 (10%)
Query: 184 FLTITNWVMKIIPIALGSFIAVTILQFKKGLNISGLGEYLSVVILSNLIQGFIVLPVILY 243
L ++ +++ G + +T ++ L + +++ S PV++Y
Sbjct: 79 LLGASDATARLVVAVTGVLLPLTAWLYRTRLGDKEVLALATLLAFS---------PVLVY 129
Query: 244 IKGFNPLTIVKGMFPALAVAFF 265
F ++ F LAV F
Sbjct: 130 YSRFMRNDLLLAAFTLLAVGFA 151
>gnl|CDD|32100 COG1916, COG1916, Uncharacterized homolog of PrgY (pheromone
shutdown protein) [Function unknown].
Length = 388
Score = 27.1 bits (60), Expect = 9.0
Identities = 12/39 (30%), Positives = 17/39 (43%)
Query: 308 AFICITLIYVMQNNGIEATFSTLFLWILMASVISAIGTA 346
A + I LI + G + L W L V+SA+G
Sbjct: 257 AALLIFLIVICFGLGGDLLLDALLQWFLFNGVLSALGAL 295
Database: CddA
Posted date: Feb 4, 2011 9:38 PM
Number of letters in database: 6,263,737
Number of sequences in database: 21,609
Lambda K H
0.326 0.139 0.408
Gapped
Lambda K H
0.267 0.0736 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21609
Number of Hits to DB: 4,897,806
Number of extensions: 267166
Number of successful extensions: 1058
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1027
Number of HSP's successfully gapped: 101
Length of query: 420
Length of database: 6,263,737
Length adjustment: 96
Effective length of query: 324
Effective length of database: 4,189,273
Effective search space: 1357324452
Effective search space used: 1357324452
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 59 (26.5 bits)