RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddB 
           21,608 sequences; 5,994,473 total letters

Searching..................................................done

Query= gi|254781171|ref|YP_003065584.1| hypothetical protein
CLIBASIA_05390 [Candidatus Liberibacter asiaticus str. psy62]
         (420 letters)



>gnl|CDD|183075 PRK11283, gltP, glutamate/aspartate:proton symporter; Provisional.
          Length = 437

 Score = 89.8 bits (223), Expect = 1e-18
 Identities = 79/369 (21%), Positives = 167/369 (45%), Gaps = 17/369 (4%)

Query: 46  NVFVRIFKFISLPLISLSLIVSLSKCVPEQGMGKLWGKTVFYTMLTTMLAASVALCTYGL 105
           ++F+ + K I +P++  +LIV ++     + +G++  KT+ Y  + T +A  + +    +
Sbjct: 46  DIFIHLIKMIVVPIVISTLIVGIAGVGDAKQLGRIGAKTIIYFEVITTVAIILGITLANV 105

Query: 106 ISPS-----NMITKPDV--------AVNIGKMNFWNYVANLIPNNVVAPFLESQVIGILL 152
             P      + +   D+         V          + +LIP N+ A   + +++ I+ 
Sbjct: 106 FQPGAGIDMSQLATVDISKYQSTTEEVQSHSHGLMGTILSLIPTNIFASMAKGEMLPIIF 165

Query: 153 ISGSIGIATHFITDKHIKSSTIVFFEGIHSIFLTITNWVMKIIPIALGSFIAVTILQFKK 212
            S   G+    +   H +   +  F  +      +T+ VM+  P+ + + IAVT+  F  
Sbjct: 166 FSVLFGLGLSSLPATH-REPLVTVFRSVSETMFKVTHMVMRYAPVGVFALIAVTVANFGF 224

Query: 213 GLNISGLGEYLSVVILSNLIQGFIVLPVILYIKGFNPLTIVKGMFPALAVAFFSKSSAGT 272
             ++  L + + +V  + L    +VL ++  + G +   +++ +   L +A+ + SS   
Sbjct: 225 A-SLWPLAKLVLLVYFAILFFALVVLGIVARLCGLSIWILIRILKDELILAYSTASSETV 283

Query: 273 LPVTMRTAEKNLNISPEVSRSILPFCTSINMNGCAAFICITLIYVMQNNGIEATFSTLFL 332
           LP  +   E        ++  ++P   S N++G   +  I  I++ Q  GI+ +     +
Sbjct: 284 LPRIIEKMEA-YGAPKSITSFVVPTGYSFNLDGSTLYQSIAAIFIAQLYGIDLSIWQEII 342

Query: 333 WILMASVISAIGTAGVPMGCFFLSASLLTNMGIPINIMSMILPFYSIVDMFETTLNVWSD 392
            +L   V S  G AGVP   F +  + L ++GIP+  ++ I     I+DM  T LNV  +
Sbjct: 343 LVLTLMVTSK-GIAGVPGVSFVVLLATLGSVGIPLEGLAFIAGVDRILDMARTALNVVGN 401

Query: 393 SCVTVIVNK 401
           +   +++ K
Sbjct: 402 ALAVLVIAK 410


>gnl|CDD|179317 PRK01663, PRK01663, C4-dicarboxylate transporter DctA; Reviewed.
          Length = 428

 Score = 66.5 bits (163), Expect = 1e-11
 Identities = 81/370 (21%), Positives = 169/370 (45%), Gaps = 25/370 (6%)

Query: 20  VSSILIGIFSGTTDYVIFNETAE---FIVNVFVRIFKFISLPLISLSLIVSLSKCVPEQG 76
           + +I+IGI  G      + E       + + F+++ K I  P+I  +++  ++     + 
Sbjct: 14  LVAIIIGILLG----HFYPELGAQMKPLGDGFIKLIKMIIAPIIFCTVVTGIAGMGDMKK 69

Query: 77  MGKLWGKTVFYTMLTTMLAASVALCTYGLISP-SNMITKP------DVAV---NIGKMNF 126
           +G++ GK + Y  + + +A  + L    ++ P + M   P       VA       +   
Sbjct: 70  VGRVGGKALLYFEIVSTIALIIGLIVVNVVQPGAGMNIDPATLDAKAVAQYAAQAHEQGT 129

Query: 127 WNYVANLIPNNVVAPFLESQVIGILLISGSIGIATHFITDKHIKSSTIVFFEGIHSIFLT 186
            +++ ++IP  VV  F    ++ +LL +   G A   + +K        F E +  +   
Sbjct: 130 VDFLMDIIPTTVVGAFASGDILQVLLFAVLFGFALARLGEK--GKPVFDFIESLSHVLFG 187

Query: 187 ITNWVMKIIPI-ALGSFIAVTILQFKKGLNISGLGEYLSVVILSNLIQGFIVLPVILYIK 245
           I N +MK+ PI A G+ +A TI ++  G ++  LG+ +    ++ ++  F+VL  I  + 
Sbjct: 188 IVNMIMKLAPIGAFGA-MAFTIGKYGVG-SLVQLGQLIGCFYITCILFVFVVLGAIARLT 245

Query: 246 GFNPLTIVKGMFPALAVAFFSKSSAGTLPVTMRTAEKNLNISPEVSRSILPFCTSINMNG 305
           GF+    ++ +   L +   + SS   LP  M   EK L     V   ++P   S N++G
Sbjct: 246 GFSIFKFIRYIKEELLIVLGTSSSESALPRMMEKMEK-LGCKKSVVGLVIPTGYSFNLDG 304

Query: 306 CAAFICITLIYVMQNNGIEATFSTLFLWILMASVISAIGTAGVPMGCFFLSASLLTNMG- 364
            + ++ +  +++ Q      +       +L   ++++ G AGV    F + A+ L+ +  
Sbjct: 305 TSIYLTMAAVFIAQATNTPLSIGHQIT-LLAVLLLTSKGAAGVTGSGFIVLAATLSAVPH 363

Query: 365 IPINIMSMIL 374
           IP+  +++IL
Sbjct: 364 IPVAGLALIL 373


>gnl|CDD|184190 PRK13628, PRK13628, serine/threonine transporter SstT; Provisional.
          Length = 402

 Score = 65.7 bits (161), Expect = 2e-11
 Identities = 92/352 (26%), Positives = 156/352 (44%), Gaps = 35/352 (9%)

Query: 20  VSSILIGIFSGTTDYVIFNETAEFIV---NVFVRIFKFISLPLISLSLIVSLSKCVPEQG 76
           V  ILIG+  G    ++    AE +     +FV   K ++ P++   L+++ S    ++G
Sbjct: 17  VKQILIGLVLGILLALLSPPAAEAVGLLGTLFVGALKAVA-PILVFVLVMA-SIANHKKG 74

Query: 77  MGKLWGKTVFYTMLTTMLAASVAL-------CTYGLISPSNMITKPDVAVNIGKMNFWNY 129
                   +   +L T LAA VA+        T  L++ +  I+ P   V +        
Sbjct: 75  QKTNIRPILVLYLLGTFLAALVAVVASFLFPSTLVLVASAADISPPQGIVEV----LKTL 130

Query: 130 VANLIPNNVVAPFLESQVIGILLISGSIGIATHFITDKHIKSSTIVFFEGIHSIFLTITN 189
           + +L+ N + A  L +  IGIL  +  +G+A       H   +T      +      I  
Sbjct: 131 LLSLVDNPINA-LLNANYIGILAWAIGLGLALR-----HASDTTKNVVNDLSEAVSQIVK 184

Query: 190 WVMKIIPIALGSFIAVTILQFKKGLN-ISGLGEYLSVVILSNLIQGFIVLPVILYIK-GF 247
           WV++  PI +   +A T+ +   G + ++G  + L+V++   L    +V P+I++ K   
Sbjct: 185 WVIRFAPIGIFGLVASTLAE--TGFSALAGYAQLLAVLVGCMLFVALVVNPLIVFWKIRR 242

Query: 248 NPLTIVKGMFPALAV----AFFSKSSAGTLPVTMRTAEKNLNISPEVSRSILPFCTSINM 303
           NP  +V   F  L      AFF++SSA  +PV M   EK L +  +     +P   +INM
Sbjct: 243 NPYPLV---FTCLRESGVTAFFTRSSAANIPVNMALCEK-LGLDEDTYSVSIPLGATINM 298

Query: 304 NGCAAFICITLIYVMQNNGIEATFSTLFLWILMASVISAIGTAGVPMGCFFL 355
            G A  I +  +  +   GI     T  L  ++A+ ISA G +GV  G   L
Sbjct: 299 AGAAITITVLTLAAVHTLGIPVDLPTALLLSVVAA-ISACGASGVAGGSLLL 349


>gnl|CDD|183850 PRK13027, PRK13027, C4-dicarboxylate transporter DctA; Reviewed.
          Length = 421

 Score = 61.6 bits (150), Expect = 3e-10
 Identities = 69/349 (19%), Positives = 154/349 (44%), Gaps = 23/349 (6%)

Query: 48  FVRIFKFISLPLISLSLIVSLSKCVPEQGMGKLWGKTVFYTMLTTMLAASVALCTYGLIS 107
           F+++ K +  P++   ++  ++     + +G++  K V Y  + T +A  + L    L  
Sbjct: 40  FIKLIKMLIGPIVFCVVVSGIAGAGDLKKVGRVGLKAVIYFEVMTTIALVIGLVLAYLTG 99

Query: 108 P-SNMITKPDVAVNIGKMNFW-----------NYVANLIPNNVVAPFLESQVIGILLISG 155
           P   M      +++   +  +            ++  LIP   V  F +  ++ +LL S 
Sbjct: 100 PGVGMNIDLR-SLDAASLAGYAKNAQSLKGTAGFLLKLIPTTAVDAFAKGDILQVLLFSV 158

Query: 156 SIGIATHFITDKHIKSSTIVFFEGIHSIFLTITNWVMKIIPIALGSFIAVTILQFKKGLN 215
             G A   + ++          + +  +   I  +++K+ P+ +   IA T  ++  G +
Sbjct: 159 LFGSALSLLGER--AKRVNRLIDELSHVLFRIMGFIIKLAPLGVLGAIAFTTGKYGVG-S 215

Query: 216 ISGLGEYLSVVILSNLIQGFIVLPVILYIKGFNPLTIVKGMFPALAVAFFSKSSAGTLPV 275
           +  LG  ++V  L+  +   +VL  ++ + GF+   +++ +   L +   + SS   LP 
Sbjct: 216 LKQLGMLVAVFYLTCFVFVVVVLGAVMRLAGFSVFKLIRYLREELLIVLGTASSDAVLPQ 275

Query: 276 TMRTAEKNLNISPEVSRSILPFCTSINMNGCAAFICITLIYVMQNNGIEATFSTLFLWIL 335
            MR  E  + I       ++P   S N++G + ++ +  +++ Q      +   L   IL
Sbjct: 276 VMRKLEH-MGIKDSTVGLVIPTGYSFNLDGFSIYLTLAAVFIAQATNTPLSMHDLIT-IL 333

Query: 336 MASVISAIGTAGVPMGCFFLSASLLTNMG-IPINIMSMILPFYSIVDMF 383
           + S++++ G  G+P     + A+ L+ +  IP+  + +ILP    VD F
Sbjct: 334 LVSLVTSKGAHGIPGSAIVILAATLSAIPAIPVLGLVLILP----VDWF 378


>gnl|CDD|173158 PRK14695, PRK14695, serine/threonine transporter SstT; Provisional.
          Length = 319

 Score = 57.8 bits (139), Expect = 5e-09
 Identities = 83/319 (26%), Positives = 141/319 (44%), Gaps = 19/319 (5%)

Query: 86  FYTMLTTMLAASVALCTYGLISPSNMITKPDVAVNIGKMNFWNYVANLIPNNVVAPFLES 145
           F   L  +LA+ +      L S +  I  PD    IG++   N +  L+ + V A  L +
Sbjct: 5   FAAALVAVLASFIVPIEITLNSANTEIAPPD---GIGQV-LSNLLLKLVDSPVNA-LLTA 59

Query: 146 QVIGILLISGSIGIATHFITDKHIKSSTIVFFEGIHSIFLTITNWVMKIIPIALGSFIAV 205
             IGIL  +   GIA      +    ++    + I  +   I  W++ + P  +   +  
Sbjct: 60  NYIGILSWAVIFGIAM-----REASKNSKELLKTIADVTSKIVEWIINLAPFGILGLVFK 114

Query: 206 TILQFKKGLNISGLGEYLSVVILSNLIQGFIVLPVI-LYIKGFNPLTIVKGMFPALAV-A 263
           TI     G +++  G  L +++ + L    +V P+I  +    NP  +V        V A
Sbjct: 115 TISDKGVG-SLANYGILLVLLVTTMLFVAPVVNPLIAFFFMRRNPYPLVWNCLRVSGVTA 173

Query: 264 FFSKSSAGTLPVTMRTAEKNLNISPEVSRSILPFCTSINMNGCAAFICITLIYVMQNNGI 323
           FF++SSA  +PV M+    +L ++P+     +P  ++INM G A  I +  +  +   GI
Sbjct: 174 FFTRSSATNIPVNMKLCH-DLGLNPDTYSVSIPLGSTINMAGVAITINLLTLVTVNTLGI 232

Query: 324 EATFSTLFLWILMASVISAIGTAGVPMGCFFLSASLLTNMG----IPINIMSMILPFYSI 379
              F+T F+  ++A+ ISA G +G+  G   L     +  G    I I I+ +      I
Sbjct: 233 PVDFATAFVLSVVAA-ISACGASGIAGGSLLLIPVACSLFGISNDIAIQIVGVGFVIGVI 291

Query: 380 VDMFETTLNVWSDSCVTVI 398
            D  ET LN  +D   T +
Sbjct: 292 QDSCETALNSSTDVLFTAV 310


>gnl|CDD|129899 TIGR00819, ydaH, p-Aminobenzoyl-glutamate transporter family.  The
           p-Aminobenzoyl-glutamate transporter family includes two
           transporters, the AbgT (YdaH) protein of E. coli and
           MtrF of Neisseria gonorrhoea. AbgT is apparently cryptic
           in wild type cells, but when expressed on a high copy
           number plasmid, or when expressed at higher levels due
           to mutation, it allows utilization of
           p-aminobenzoyl-glutamate as a source of p-aminobenzoate
           for p-aminobenzoate auxotrophs. p-Aminobenzoate is a
           constituent of and a precursor for the biosynthesis of
           folic acid.
          Length = 513

 Score = 28.8 bits (64), Expect = 3.1
 Identities = 33/152 (21%), Positives = 62/152 (40%), Gaps = 19/152 (12%)

Query: 140 APFLESQVIGILLISGSIGIATHFITDKHIKSSTIVFFEGIHSIFLTITNWVMKIIPIA- 198
           +PF++  V  I L     GIA    T + I+    +       +   +  +++ I   A 
Sbjct: 300 SPFIKGIVPFIFLFFALPGIAYGIAT-RSIRGEADLPHAMAEPM-KELAGFIVIIFFAAQ 357

Query: 199 ---------LGSFIAVTILQFKKGLNISGLGEYLSVVILSNLIQGFI-----VLPVILYI 244
                    +G FIAV    F +   ++G+  ++   ++   I  FI     +  ++  I
Sbjct: 358 FVAFFNWSNIGKFIAVGGADFLEESGLAGIPAFIGFALICAFICLFIASASAIWAILAPI 417

Query: 245 KGFNPLTIVKGMFPALAVAFFSKSSAGTLPVT 276
             F P+ ++ G  PA A A F  + + TL + 
Sbjct: 418 --FVPMFMLAGFAPAFAQAAFRIADSSTLIIA 447


>gnl|CDD|178582 PLN03005, PLN03005, beta-fructofuranosidase.
          Length = 550

 Score = 28.5 bits (63), Expect = 3.8
 Identities = 21/80 (26%), Positives = 33/80 (41%), Gaps = 2/80 (2%)

Query: 247 FNPLTIVKGMFPAL--AVAFFSKSSAGTLPVTMRTAEKNLNISPEVSRSILPFCTSINMN 304
           F P  ++   + AL  ++ FF     GTL     T ++ LN      R  +P   +  MN
Sbjct: 79  FEPHPMMAEAWEALRRSMVFFRGQPVGTLAAVDNTTDEVLNYDQVFVRDFVPSALAFLMN 138

Query: 305 GCAAFICITLIYVMQNNGIE 324
           G    +   L+  +Q  G E
Sbjct: 139 GEPDIVKHFLLKTLQLQGWE 158


>gnl|CDD|162058 TIGR00834, ae, anion exchange protein.  They preferentially
           catalyze anion exchange (antiport) reactions, typically
           acting as HCO3-:Cl- antiporters, but also transporting a
           range of other inorganic and organic anions.
           Additionally, renal Na+:HCO3- cotransporters have been
           found to be members of the AE family. They catalyze the
           reabsorption of HCO3- in the renal proximal tubule.
          Length = 900

 Score = 27.4 bits (61), Expect = 6.6
 Identities = 18/62 (29%), Positives = 27/62 (43%), Gaps = 16/62 (25%)

Query: 351 GCFFLSASL----------------LTNMGIPINIMSMILPFYSIVDMFETTLNVWSDSC 394
           G FFL+  L                + + G+PI+I+ M+L    I D +   L+V S   
Sbjct: 570 GTFFLAMFLRKFKNSRYFPGKARRLIGDFGVPISILIMVLVDIFIGDTYTQKLSVPSGLK 629

Query: 395 VT 396
           VT
Sbjct: 630 VT 631


>gnl|CDD|178256 PLN02650, PLN02650, dihydroflavonol-4-reductase.
          Length = 351

 Score = 27.1 bits (60), Expect = 8.3
 Identities = 17/47 (36%), Positives = 20/47 (42%), Gaps = 4/47 (8%)

Query: 268 SSAGTLPVTMRTAEKNLNISPEVSRSILPFCTSINMNGCAAFICITL 314
           SSAGT+ V     E    +  E   S L FC    M G   F+  TL
Sbjct: 127 SSAGTVNVE----EHQKPVYDEDCWSDLDFCRRKKMTGWMYFVSKTL 169


>gnl|CDD|147912 pfam06011, TRP, Transient receptor potential (TRP) ion channel.
           This family of proteins are transient receptor potential
           (TRP) ion channels. They are essential for cellular
           viability and are involved in cell growth and cell wall
           synthesis. The genes for these proteins are homologous
           to polycystic kidney disease related ion channel genes.
          Length = 532

 Score = 27.2 bits (61), Expect = 8.4
 Identities = 24/142 (16%), Positives = 41/142 (28%), Gaps = 27/142 (19%)

Query: 151 LLISGSIGIATHFITDKHIKSSTIVFFEGIHSIFLT----------ITNWV------MKI 194
           LL S    I     T  HI  +    F+    + LT             W       M +
Sbjct: 157 LLASAFASIYGPSNTAAHIAPNFGDLFQYFQFVALTGMLSVNYPPIYQAWTSNFAWSMGL 216

Query: 195 IPIALGSFIAVTILQFKKGLNISGLGEYLSV--------VILSNLIQGFIVLPVILYIKG 246
           I +    F+      + +   I  L   + +          +  LI   +++ +++  K 
Sbjct: 217 IRV---GFMQKIFDWYVQATGIQRLAYLVGIESTNDFWTGFIFFLIFIALIVVLVIQFKF 273

Query: 247 FNPLTIVKGMFPALAVAFFSKS 268
              L    G       A F K 
Sbjct: 274 ILELLARFGKMKPDKFAEFRKK 295


  Database: CddB
    Posted date:  Feb 4, 2011  9:54 PM
  Number of letters in database: 5,994,473
  Number of sequences in database:  21,608
  
Lambda     K      H
   0.326    0.139    0.408 

Gapped
Lambda     K      H
   0.267   0.0653    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 6,554,011
Number of extensions: 423317
Number of successful extensions: 1230
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1211
Number of HSP's successfully gapped: 79
Length of query: 420
Length of database: 5,994,473
Length adjustment: 96
Effective length of query: 324
Effective length of database: 3,920,105
Effective search space: 1270114020
Effective search space used: 1270114020
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 58 (26.3 bits)