RPS-BLAST 2.2.22 [Sep-27-2009] Database: CddB 21,608 sequences; 5,994,473 total letters Searching..................................................done Query= gi|254781171|ref|YP_003065584.1| hypothetical protein CLIBASIA_05390 [Candidatus Liberibacter asiaticus str. psy62] (420 letters) >gnl|CDD|183075 PRK11283, gltP, glutamate/aspartate:proton symporter; Provisional. Length = 437 Score = 89.8 bits (223), Expect = 1e-18 Identities = 79/369 (21%), Positives = 167/369 (45%), Gaps = 17/369 (4%) Query: 46 NVFVRIFKFISLPLISLSLIVSLSKCVPEQGMGKLWGKTVFYTMLTTMLAASVALCTYGL 105 ++F+ + K I +P++ +LIV ++ + +G++ KT+ Y + T +A + + + Sbjct: 46 DIFIHLIKMIVVPIVISTLIVGIAGVGDAKQLGRIGAKTIIYFEVITTVAIILGITLANV 105 Query: 106 ISPS-----NMITKPDV--------AVNIGKMNFWNYVANLIPNNVVAPFLESQVIGILL 152 P + + D+ V + +LIP N+ A + +++ I+ Sbjct: 106 FQPGAGIDMSQLATVDISKYQSTTEEVQSHSHGLMGTILSLIPTNIFASMAKGEMLPIIF 165 Query: 153 ISGSIGIATHFITDKHIKSSTIVFFEGIHSIFLTITNWVMKIIPIALGSFIAVTILQFKK 212 S G+ + H + + F + +T+ VM+ P+ + + IAVT+ F Sbjct: 166 FSVLFGLGLSSLPATH-REPLVTVFRSVSETMFKVTHMVMRYAPVGVFALIAVTVANFGF 224 Query: 213 GLNISGLGEYLSVVILSNLIQGFIVLPVILYIKGFNPLTIVKGMFPALAVAFFSKSSAGT 272 ++ L + + +V + L +VL ++ + G + +++ + L +A+ + SS Sbjct: 225 A-SLWPLAKLVLLVYFAILFFALVVLGIVARLCGLSIWILIRILKDELILAYSTASSETV 283 Query: 273 LPVTMRTAEKNLNISPEVSRSILPFCTSINMNGCAAFICITLIYVMQNNGIEATFSTLFL 332 LP + E ++ ++P S N++G + I I++ Q GI+ + + Sbjct: 284 LPRIIEKMEA-YGAPKSITSFVVPTGYSFNLDGSTLYQSIAAIFIAQLYGIDLSIWQEII 342 Query: 333 WILMASVISAIGTAGVPMGCFFLSASLLTNMGIPINIMSMILPFYSIVDMFETTLNVWSD 392 +L V S G AGVP F + + L ++GIP+ ++ I I+DM T LNV + Sbjct: 343 LVLTLMVTSK-GIAGVPGVSFVVLLATLGSVGIPLEGLAFIAGVDRILDMARTALNVVGN 401 Query: 393 SCVTVIVNK 401 + +++ K Sbjct: 402 ALAVLVIAK 410 >gnl|CDD|179317 PRK01663, PRK01663, C4-dicarboxylate transporter DctA; Reviewed. Length = 428 Score = 66.5 bits (163), Expect = 1e-11 Identities = 81/370 (21%), Positives = 169/370 (45%), Gaps = 25/370 (6%) Query: 20 VSSILIGIFSGTTDYVIFNETAE---FIVNVFVRIFKFISLPLISLSLIVSLSKCVPEQG 76 + +I+IGI G + E + + F+++ K I P+I +++ ++ + Sbjct: 14 LVAIIIGILLG----HFYPELGAQMKPLGDGFIKLIKMIIAPIIFCTVVTGIAGMGDMKK 69 Query: 77 MGKLWGKTVFYTMLTTMLAASVALCTYGLISP-SNMITKP------DVAV---NIGKMNF 126 +G++ GK + Y + + +A + L ++ P + M P VA + Sbjct: 70 VGRVGGKALLYFEIVSTIALIIGLIVVNVVQPGAGMNIDPATLDAKAVAQYAAQAHEQGT 129 Query: 127 WNYVANLIPNNVVAPFLESQVIGILLISGSIGIATHFITDKHIKSSTIVFFEGIHSIFLT 186 +++ ++IP VV F ++ +LL + G A + +K F E + + Sbjct: 130 VDFLMDIIPTTVVGAFASGDILQVLLFAVLFGFALARLGEK--GKPVFDFIESLSHVLFG 187 Query: 187 ITNWVMKIIPI-ALGSFIAVTILQFKKGLNISGLGEYLSVVILSNLIQGFIVLPVILYIK 245 I N +MK+ PI A G+ +A TI ++ G ++ LG+ + ++ ++ F+VL I + Sbjct: 188 IVNMIMKLAPIGAFGA-MAFTIGKYGVG-SLVQLGQLIGCFYITCILFVFVVLGAIARLT 245 Query: 246 GFNPLTIVKGMFPALAVAFFSKSSAGTLPVTMRTAEKNLNISPEVSRSILPFCTSINMNG 305 GF+ ++ + L + + SS LP M EK L V ++P S N++G Sbjct: 246 GFSIFKFIRYIKEELLIVLGTSSSESALPRMMEKMEK-LGCKKSVVGLVIPTGYSFNLDG 304 Query: 306 CAAFICITLIYVMQNNGIEATFSTLFLWILMASVISAIGTAGVPMGCFFLSASLLTNMG- 364 + ++ + +++ Q + +L ++++ G AGV F + A+ L+ + Sbjct: 305 TSIYLTMAAVFIAQATNTPLSIGHQIT-LLAVLLLTSKGAAGVTGSGFIVLAATLSAVPH 363 Query: 365 IPINIMSMIL 374 IP+ +++IL Sbjct: 364 IPVAGLALIL 373 >gnl|CDD|184190 PRK13628, PRK13628, serine/threonine transporter SstT; Provisional. Length = 402 Score = 65.7 bits (161), Expect = 2e-11 Identities = 92/352 (26%), Positives = 156/352 (44%), Gaps = 35/352 (9%) Query: 20 VSSILIGIFSGTTDYVIFNETAEFIV---NVFVRIFKFISLPLISLSLIVSLSKCVPEQG 76 V ILIG+ G ++ AE + +FV K ++ P++ L+++ S ++G Sbjct: 17 VKQILIGLVLGILLALLSPPAAEAVGLLGTLFVGALKAVA-PILVFVLVMA-SIANHKKG 74 Query: 77 MGKLWGKTVFYTMLTTMLAASVAL-------CTYGLISPSNMITKPDVAVNIGKMNFWNY 129 + +L T LAA VA+ T L++ + I+ P V + Sbjct: 75 QKTNIRPILVLYLLGTFLAALVAVVASFLFPSTLVLVASAADISPPQGIVEV----LKTL 130 Query: 130 VANLIPNNVVAPFLESQVIGILLISGSIGIATHFITDKHIKSSTIVFFEGIHSIFLTITN 189 + +L+ N + A L + IGIL + +G+A H +T + I Sbjct: 131 LLSLVDNPINA-LLNANYIGILAWAIGLGLALR-----HASDTTKNVVNDLSEAVSQIVK 184 Query: 190 WVMKIIPIALGSFIAVTILQFKKGLN-ISGLGEYLSVVILSNLIQGFIVLPVILYIK-GF 247 WV++ PI + +A T+ + G + ++G + L+V++ L +V P+I++ K Sbjct: 185 WVIRFAPIGIFGLVASTLAE--TGFSALAGYAQLLAVLVGCMLFVALVVNPLIVFWKIRR 242 Query: 248 NPLTIVKGMFPALAV----AFFSKSSAGTLPVTMRTAEKNLNISPEVSRSILPFCTSINM 303 NP +V F L AFF++SSA +PV M EK L + + +P +INM Sbjct: 243 NPYPLV---FTCLRESGVTAFFTRSSAANIPVNMALCEK-LGLDEDTYSVSIPLGATINM 298 Query: 304 NGCAAFICITLIYVMQNNGIEATFSTLFLWILMASVISAIGTAGVPMGCFFL 355 G A I + + + GI T L ++A+ ISA G +GV G L Sbjct: 299 AGAAITITVLTLAAVHTLGIPVDLPTALLLSVVAA-ISACGASGVAGGSLLL 349 >gnl|CDD|183850 PRK13027, PRK13027, C4-dicarboxylate transporter DctA; Reviewed. Length = 421 Score = 61.6 bits (150), Expect = 3e-10 Identities = 69/349 (19%), Positives = 154/349 (44%), Gaps = 23/349 (6%) Query: 48 FVRIFKFISLPLISLSLIVSLSKCVPEQGMGKLWGKTVFYTMLTTMLAASVALCTYGLIS 107 F+++ K + P++ ++ ++ + +G++ K V Y + T +A + L L Sbjct: 40 FIKLIKMLIGPIVFCVVVSGIAGAGDLKKVGRVGLKAVIYFEVMTTIALVIGLVLAYLTG 99 Query: 108 P-SNMITKPDVAVNIGKMNFW-----------NYVANLIPNNVVAPFLESQVIGILLISG 155 P M +++ + + ++ LIP V F + ++ +LL S Sbjct: 100 PGVGMNIDLR-SLDAASLAGYAKNAQSLKGTAGFLLKLIPTTAVDAFAKGDILQVLLFSV 158 Query: 156 SIGIATHFITDKHIKSSTIVFFEGIHSIFLTITNWVMKIIPIALGSFIAVTILQFKKGLN 215 G A + ++ + + + I +++K+ P+ + IA T ++ G + Sbjct: 159 LFGSALSLLGER--AKRVNRLIDELSHVLFRIMGFIIKLAPLGVLGAIAFTTGKYGVG-S 215 Query: 216 ISGLGEYLSVVILSNLIQGFIVLPVILYIKGFNPLTIVKGMFPALAVAFFSKSSAGTLPV 275 + LG ++V L+ + +VL ++ + GF+ +++ + L + + SS LP Sbjct: 216 LKQLGMLVAVFYLTCFVFVVVVLGAVMRLAGFSVFKLIRYLREELLIVLGTASSDAVLPQ 275 Query: 276 TMRTAEKNLNISPEVSRSILPFCTSINMNGCAAFICITLIYVMQNNGIEATFSTLFLWIL 335 MR E + I ++P S N++G + ++ + +++ Q + L IL Sbjct: 276 VMRKLEH-MGIKDSTVGLVIPTGYSFNLDGFSIYLTLAAVFIAQATNTPLSMHDLIT-IL 333 Query: 336 MASVISAIGTAGVPMGCFFLSASLLTNMG-IPINIMSMILPFYSIVDMF 383 + S++++ G G+P + A+ L+ + IP+ + +ILP VD F Sbjct: 334 LVSLVTSKGAHGIPGSAIVILAATLSAIPAIPVLGLVLILP----VDWF 378 >gnl|CDD|173158 PRK14695, PRK14695, serine/threonine transporter SstT; Provisional. Length = 319 Score = 57.8 bits (139), Expect = 5e-09 Identities = 83/319 (26%), Positives = 141/319 (44%), Gaps = 19/319 (5%) Query: 86 FYTMLTTMLAASVALCTYGLISPSNMITKPDVAVNIGKMNFWNYVANLIPNNVVAPFLES 145 F L +LA+ + L S + I PD IG++ N + L+ + V A L + Sbjct: 5 FAAALVAVLASFIVPIEITLNSANTEIAPPD---GIGQV-LSNLLLKLVDSPVNA-LLTA 59 Query: 146 QVIGILLISGSIGIATHFITDKHIKSSTIVFFEGIHSIFLTITNWVMKIIPIALGSFIAV 205 IGIL + GIA + ++ + I + I W++ + P + + Sbjct: 60 NYIGILSWAVIFGIAM-----REASKNSKELLKTIADVTSKIVEWIINLAPFGILGLVFK 114 Query: 206 TILQFKKGLNISGLGEYLSVVILSNLIQGFIVLPVI-LYIKGFNPLTIVKGMFPALAV-A 263 TI G +++ G L +++ + L +V P+I + NP +V V A Sbjct: 115 TISDKGVG-SLANYGILLVLLVTTMLFVAPVVNPLIAFFFMRRNPYPLVWNCLRVSGVTA 173 Query: 264 FFSKSSAGTLPVTMRTAEKNLNISPEVSRSILPFCTSINMNGCAAFICITLIYVMQNNGI 323 FF++SSA +PV M+ +L ++P+ +P ++INM G A I + + + GI Sbjct: 174 FFTRSSATNIPVNMKLCH-DLGLNPDTYSVSIPLGSTINMAGVAITINLLTLVTVNTLGI 232 Query: 324 EATFSTLFLWILMASVISAIGTAGVPMGCFFLSASLLTNMG----IPINIMSMILPFYSI 379 F+T F+ ++A+ ISA G +G+ G L + G I I I+ + I Sbjct: 233 PVDFATAFVLSVVAA-ISACGASGIAGGSLLLIPVACSLFGISNDIAIQIVGVGFVIGVI 291 Query: 380 VDMFETTLNVWSDSCVTVI 398 D ET LN +D T + Sbjct: 292 QDSCETALNSSTDVLFTAV 310 >gnl|CDD|129899 TIGR00819, ydaH, p-Aminobenzoyl-glutamate transporter family. The p-Aminobenzoyl-glutamate transporter family includes two transporters, the AbgT (YdaH) protein of E. coli and MtrF of Neisseria gonorrhoea. AbgT is apparently cryptic in wild type cells, but when expressed on a high copy number plasmid, or when expressed at higher levels due to mutation, it allows utilization of p-aminobenzoyl-glutamate as a source of p-aminobenzoate for p-aminobenzoate auxotrophs. p-Aminobenzoate is a constituent of and a precursor for the biosynthesis of folic acid. Length = 513 Score = 28.8 bits (64), Expect = 3.1 Identities = 33/152 (21%), Positives = 62/152 (40%), Gaps = 19/152 (12%) Query: 140 APFLESQVIGILLISGSIGIATHFITDKHIKSSTIVFFEGIHSIFLTITNWVMKIIPIA- 198 +PF++ V I L GIA T + I+ + + + +++ I A Sbjct: 300 SPFIKGIVPFIFLFFALPGIAYGIAT-RSIRGEADLPHAMAEPM-KELAGFIVIIFFAAQ 357 Query: 199 ---------LGSFIAVTILQFKKGLNISGLGEYLSVVILSNLIQGFI-----VLPVILYI 244 +G FIAV F + ++G+ ++ ++ I FI + ++ I Sbjct: 358 FVAFFNWSNIGKFIAVGGADFLEESGLAGIPAFIGFALICAFICLFIASASAIWAILAPI 417 Query: 245 KGFNPLTIVKGMFPALAVAFFSKSSAGTLPVT 276 F P+ ++ G PA A A F + + TL + Sbjct: 418 --FVPMFMLAGFAPAFAQAAFRIADSSTLIIA 447 >gnl|CDD|178582 PLN03005, PLN03005, beta-fructofuranosidase. Length = 550 Score = 28.5 bits (63), Expect = 3.8 Identities = 21/80 (26%), Positives = 33/80 (41%), Gaps = 2/80 (2%) Query: 247 FNPLTIVKGMFPAL--AVAFFSKSSAGTLPVTMRTAEKNLNISPEVSRSILPFCTSINMN 304 F P ++ + AL ++ FF GTL T ++ LN R +P + MN Sbjct: 79 FEPHPMMAEAWEALRRSMVFFRGQPVGTLAAVDNTTDEVLNYDQVFVRDFVPSALAFLMN 138 Query: 305 GCAAFICITLIYVMQNNGIE 324 G + L+ +Q G E Sbjct: 139 GEPDIVKHFLLKTLQLQGWE 158 >gnl|CDD|162058 TIGR00834, ae, anion exchange protein. They preferentially catalyze anion exchange (antiport) reactions, typically acting as HCO3-:Cl- antiporters, but also transporting a range of other inorganic and organic anions. Additionally, renal Na+:HCO3- cotransporters have been found to be members of the AE family. They catalyze the reabsorption of HCO3- in the renal proximal tubule. Length = 900 Score = 27.4 bits (61), Expect = 6.6 Identities = 18/62 (29%), Positives = 27/62 (43%), Gaps = 16/62 (25%) Query: 351 GCFFLSASL----------------LTNMGIPINIMSMILPFYSIVDMFETTLNVWSDSC 394 G FFL+ L + + G+PI+I+ M+L I D + L+V S Sbjct: 570 GTFFLAMFLRKFKNSRYFPGKARRLIGDFGVPISILIMVLVDIFIGDTYTQKLSVPSGLK 629 Query: 395 VT 396 VT Sbjct: 630 VT 631 >gnl|CDD|178256 PLN02650, PLN02650, dihydroflavonol-4-reductase. Length = 351 Score = 27.1 bits (60), Expect = 8.3 Identities = 17/47 (36%), Positives = 20/47 (42%), Gaps = 4/47 (8%) Query: 268 SSAGTLPVTMRTAEKNLNISPEVSRSILPFCTSINMNGCAAFICITL 314 SSAGT+ V E + E S L FC M G F+ TL Sbjct: 127 SSAGTVNVE----EHQKPVYDEDCWSDLDFCRRKKMTGWMYFVSKTL 169 >gnl|CDD|147912 pfam06011, TRP, Transient receptor potential (TRP) ion channel. This family of proteins are transient receptor potential (TRP) ion channels. They are essential for cellular viability and are involved in cell growth and cell wall synthesis. The genes for these proteins are homologous to polycystic kidney disease related ion channel genes. Length = 532 Score = 27.2 bits (61), Expect = 8.4 Identities = 24/142 (16%), Positives = 41/142 (28%), Gaps = 27/142 (19%) Query: 151 LLISGSIGIATHFITDKHIKSSTIVFFEGIHSIFLT----------ITNWV------MKI 194 LL S I T HI + F+ + LT W M + Sbjct: 157 LLASAFASIYGPSNTAAHIAPNFGDLFQYFQFVALTGMLSVNYPPIYQAWTSNFAWSMGL 216 Query: 195 IPIALGSFIAVTILQFKKGLNISGLGEYLSV--------VILSNLIQGFIVLPVILYIKG 246 I + F+ + + I L + + + LI +++ +++ K Sbjct: 217 IRV---GFMQKIFDWYVQATGIQRLAYLVGIESTNDFWTGFIFFLIFIALIVVLVIQFKF 273 Query: 247 FNPLTIVKGMFPALAVAFFSKS 268 L G A F K Sbjct: 274 ILELLARFGKMKPDKFAEFRKK 295 Database: CddB Posted date: Feb 4, 2011 9:54 PM Number of letters in database: 5,994,473 Number of sequences in database: 21,608 Lambda K H 0.326 0.139 0.408 Gapped Lambda K H 0.267 0.0653 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 21608 Number of Hits to DB: 6,554,011 Number of extensions: 423317 Number of successful extensions: 1230 Number of sequences better than 10.0: 1 Number of HSP's gapped: 1211 Number of HSP's successfully gapped: 79 Length of query: 420 Length of database: 5,994,473 Length adjustment: 96 Effective length of query: 324 Effective length of database: 3,920,105 Effective search space: 1270114020 Effective search space used: 1270114020 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 58 (26.3 bits)