RPS-BLAST 2.2.22 [Sep-27-2009] Database: mmdb70 33,805 sequences; 4,956,049 total letters Searching..................................................done Query= gi|254781171|ref|YP_003065584.1| hypothetical protein CLIBASIA_05390 [Candidatus Liberibacter asiaticus str. psy62] (420 letters) >2nwl_A GLTPH, glutamate symport protein; alpha helical, membrane protein, helical hairpin, unwound region, transport protein; HET: PLM; 2.96A {Pyrococcus horikoshii} PDB: 2nww_A* 1xfh_A* 2nwx_A* (A:) Length = 422 Score = 134 bits (337), Expect = 2e-32 Identities = 99/418 (23%), Positives = 186/418 (44%), Gaps = 24/418 (5%) Query: 5 KMITLDKQQKAYLLYVSSILIGIFSG-----TTDYVIFNETAEFIVNVFVRIFKFISLPL 59 + + + + +++G G + + ++FVR+ K + +P+ Sbjct: 2 GLYRKYIEYPVLIKILIGLILGAIVGLILGHYGYAHAVHTYVKPFGDLFVRLLKMLVMPI 61 Query: 60 ISLSLIVSLSKCVPEQGMGKLWGKTVFYTMLTTMLAASVALCTYGLISPSNMITKPDVAV 119 + SL+V + + +G++ K V Y +LT+ A ++ + L +P I Sbjct: 62 VFASLVVGAAS-ISPARLGRVGVKIVVYYLLTSAFAVTLGIIMARLFNPGAGIHLAVGGQ 120 Query: 120 NIGKMN---FWNYVANLIPNNVVAPFLESQVIGILLISGSIGIATHFI------TDKHIK 170 + + +++P N QV+ + + +GIA ++ + Sbjct: 121 QFQPHQAPPLVHILLDIVPTNPFGALANGQVLPTIFFAIILGIAITYLMNSENEKVRKSA 180 Query: 171 SSTIVFFEGIHSIFLTITNWVMKIIPIALGSFIAVTILQFKKGLNISGLGEYLSVVILSN 230 + + G+ I N VM+ PI + + IA + + + L + + V + Sbjct: 181 ETLLDAINGLAEAMYKIVNGVMQYAPIGVFALIAYVMAEQGVHVVGE-LAKVTAAVYVGL 239 Query: 231 LIQGFIVLPVILYIKGFNPLTIVKGMFPALAVAFFSKSSAGTLPVTMRTAEKNLNISPEV 290 +Q +V V+L I G +P++ +K A+ AF ++SS+GTLPVTMR A++ IS + Sbjct: 240 TLQILLVYFVLLKIYGIDPISFIKHAKDAMLTAFVTRSSSGTLPVTMRVAKEM-GISEGI 298 Query: 291 SRSILPFCTSINMNGCAAFICITLIYVMQNNGIEATFSTLFLWILMASVISAIGTAGVPM 350 LP +INM+G A + + ++ G T +L A V+++IGTAGVP Sbjct: 299 YSFTLPLGATINMDGTALYQGVCTFFIANALGSHLTVGQQLTIVLTA-VLASIGTAGVPG 357 Query: 351 GCFFLSASLLTNMGIPIN------IMSMILPFYSIVDMFETTLNVWSDSCVTVIVNKS 402 + A +L ++G+P+ +MIL +I+DM T +NV D T IV K+ Sbjct: 358 AGAIMLAMVLHSVGLPLTDPNVAAAYAMILGIDAILDMGRTMVNVTGDLTGTAIVAKT 415 >3cmm_A Ubiquitin-activating enzyme E1 1; UBA1, ATP, protein turnover, ligase, conformational change, thioester, adenylation, transthioesterification, ATP-binding; 2.70A {Saccharomyces cerevisiae} (A:397-585,A:856-903) Length = 237 Score = 27.8 bits (61), Expect = 2.7 Identities = 11/38 (28%), Positives = 16/38 (42%) Query: 231 LIQGFIVLPVILYIKGFNPLTIVKGMFPALAVAFFSKS 268 L+ G + L + I + K F LA+ FF S Sbjct: 197 LVTGLVNLELYKLIDNKTDIEQYKNGFVNLALPFFGFS 234 >2qjv_A Uncharacterized IOLB-like protein; 16422983, structural genomics, joint center for structural genomics, JCSG; HET: MLY MSE; 1.90A {Salmonella typhimurium LT2} (A:12-124) Length = 113 Score = 26.6 bits (59), Expect = 6.3 Identities = 8/57 (14%), Positives = 16/57 (28%), Gaps = 4/57 (7%) Query: 127 WNYVA----NLIPNNVVAPFLESQVIGILLISGSIGIATHFITDKHIKSSTIVFFEG 179 W YV L + + + ++L++G + I F Sbjct: 15 WEYVGFDVWQLXAGESITLPSDERERCLVLVAGLASVXAADSFFYRIGQRXSPFERI 71 Database: mmdb70 Posted date: Jun 20, 2010 3:12 AM Number of letters in database: 4,956,049 Number of sequences in database: 33,805 Lambda K H 0.326 0.139 0.408 Gapped Lambda K H 0.267 0.0596 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 33805 Number of Hits to DB: 2,905,061 Number of extensions: 121303 Number of successful extensions: 343 Number of sequences better than 10.0: 1 Number of HSP's gapped: 337 Number of HSP's successfully gapped: 23 Length of query: 420 Length of database: 4,956,049 Length adjustment: 91 Effective length of query: 329 Effective length of database: 1,879,794 Effective search space: 618452226 Effective search space used: 618452226 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 56 (25.6 bits)