RPS-BLAST 2.2.22 [Sep-27-2009]

Database: mmdb70 
           33,805 sequences; 4,956,049 total letters

Searching..................................................done

Query= gi|254781171|ref|YP_003065584.1| hypothetical protein
CLIBASIA_05390 [Candidatus Liberibacter asiaticus str. psy62]
         (420 letters)



>2nwl_A GLTPH, glutamate symport protein; alpha helical, membrane
           protein, helical hairpin, unwound region, transport
           protein; HET: PLM; 2.96A {Pyrococcus horikoshii} PDB:
           2nww_A* 1xfh_A* 2nwx_A* (A:)
          Length = 422

 Score =  134 bits (337), Expect = 2e-32
 Identities = 99/418 (23%), Positives = 186/418 (44%), Gaps = 24/418 (5%)

Query: 5   KMITLDKQQKAYLLYVSSILIGIFSG-----TTDYVIFNETAEFIVNVFVRIFKFISLPL 59
            +     +    +  +  +++G   G            +   +   ++FVR+ K + +P+
Sbjct: 2   GLYRKYIEYPVLIKILIGLILGAIVGLILGHYGYAHAVHTYVKPFGDLFVRLLKMLVMPI 61

Query: 60  ISLSLIVSLSKCVPEQGMGKLWGKTVFYTMLTTMLAASVALCTYGLISPSNMITKPDVAV 119
           +  SL+V  +  +    +G++  K V Y +LT+  A ++ +    L +P   I       
Sbjct: 62  VFASLVVGAAS-ISPARLGRVGVKIVVYYLLTSAFAVTLGIIMARLFNPGAGIHLAVGGQ 120

Query: 120 NIGKMN---FWNYVANLIPNNVVAPFLESQVIGILLISGSIGIATHFI------TDKHIK 170
                      + + +++P N        QV+  +  +  +GIA  ++        +   
Sbjct: 121 QFQPHQAPPLVHILLDIVPTNPFGALANGQVLPTIFFAIILGIAITYLMNSENEKVRKSA 180

Query: 171 SSTIVFFEGIHSIFLTITNWVMKIIPIALGSFIAVTILQFKKGLNISGLGEYLSVVILSN 230
            + +    G+      I N VM+  PI + + IA  + +    +    L +  + V +  
Sbjct: 181 ETLLDAINGLAEAMYKIVNGVMQYAPIGVFALIAYVMAEQGVHVVGE-LAKVTAAVYVGL 239

Query: 231 LIQGFIVLPVILYIKGFNPLTIVKGMFPALAVAFFSKSSAGTLPVTMRTAEKNLNISPEV 290
            +Q  +V  V+L I G +P++ +K    A+  AF ++SS+GTLPVTMR A++   IS  +
Sbjct: 240 TLQILLVYFVLLKIYGIDPISFIKHAKDAMLTAFVTRSSSGTLPVTMRVAKEM-GISEGI 298

Query: 291 SRSILPFCTSINMNGCAAFICITLIYVMQNNGIEATFSTLFLWILMASVISAIGTAGVPM 350
               LP   +INM+G A +  +   ++    G   T       +L A V+++IGTAGVP 
Sbjct: 299 YSFTLPLGATINMDGTALYQGVCTFFIANALGSHLTVGQQLTIVLTA-VLASIGTAGVPG 357

Query: 351 GCFFLSASLLTNMGIPIN------IMSMILPFYSIVDMFETTLNVWSDSCVTVIVNKS 402
               + A +L ++G+P+         +MIL   +I+DM  T +NV  D   T IV K+
Sbjct: 358 AGAIMLAMVLHSVGLPLTDPNVAAAYAMILGIDAILDMGRTMVNVTGDLTGTAIVAKT 415


>3cmm_A Ubiquitin-activating enzyme E1 1; UBA1, ATP, protein
           turnover, ligase, conformational change, thioester,
           adenylation, transthioesterification, ATP-binding; 2.70A
           {Saccharomyces cerevisiae} (A:397-585,A:856-903)
          Length = 237

 Score = 27.8 bits (61), Expect = 2.7
 Identities = 11/38 (28%), Positives = 16/38 (42%)

Query: 231 LIQGFIVLPVILYIKGFNPLTIVKGMFPALAVAFFSKS 268
           L+ G + L +   I     +   K  F  LA+ FF  S
Sbjct: 197 LVTGLVNLELYKLIDNKTDIEQYKNGFVNLALPFFGFS 234


>2qjv_A Uncharacterized IOLB-like protein; 16422983, structural
           genomics, joint center for structural genomics, JCSG;
           HET: MLY MSE; 1.90A {Salmonella typhimurium LT2}
           (A:12-124)
          Length = 113

 Score = 26.6 bits (59), Expect = 6.3
 Identities = 8/57 (14%), Positives = 16/57 (28%), Gaps = 4/57 (7%)

Query: 127 WNYVA----NLIPNNVVAPFLESQVIGILLISGSIGIATHFITDKHIKSSTIVFFEG 179
           W YV      L     +    + +   ++L++G   +         I      F   
Sbjct: 15  WEYVGFDVWQLXAGESITLPSDERERCLVLVAGLASVXAADSFFYRIGQRXSPFERI 71


  Database: mmdb70
    Posted date:  Jun 20, 2010  3:12 AM
  Number of letters in database: 4,956,049
  Number of sequences in database:  33,805
  
Lambda     K      H
   0.326    0.139    0.408 

Gapped
Lambda     K      H
   0.267   0.0596    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33805
Number of Hits to DB: 2,905,061
Number of extensions: 121303
Number of successful extensions: 343
Number of sequences better than 10.0: 1
Number of HSP's gapped: 337
Number of HSP's successfully gapped: 23
Length of query: 420
Length of database: 4,956,049
Length adjustment: 91
Effective length of query: 329
Effective length of database: 1,879,794
Effective search space: 618452226
Effective search space used: 618452226
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 56 (25.6 bits)