RPS-BLAST 2.2.22 [Sep-27-2009]
Database: pdb70
24,244 sequences; 5,693,230 total letters
Searching..................................................done
Query= gi|254781171|ref|YP_003065584.1| hypothetical protein
CLIBASIA_05390 [Candidatus Liberibacter asiaticus str. psy62]
(420 letters)
>2nwl_A GLTPH, glutamate symport protein; alpha helical, membrane protein,
helical hairpin, unwound region, transport protein; HET:
PLM; 2.96A {Pyrococcus horikoshii} PDB: 2nww_A* 1xfh_A*
2nwx_A*
Length = 422
Score = 146 bits (370), Expect = 7e-36
Identities = 101/396 (25%), Positives = 186/396 (46%), Gaps = 20/396 (5%)
Query: 23 ILIGIFSGTTDYV-IFNETAEFIVNVFVRIFKFISLPLISLSLIVSLSKCVPEQGMGKLW 81
++G+ G Y + + ++FVR+ K + +P++ SL+V + P + +G++
Sbjct: 24 AIVGLILGHYGYAHAVHTYVKPFGDLFVRLLKMLVMPIVFASLVVGAASISPAR-LGRVG 82
Query: 82 GKTVFYTMLTTMLAASVALCTYGLISPSNMIT---KPDVAVNIGKMNFWNYVANLIPNNV 138
K V Y +LT+ A ++ + L +P I + + +++P N
Sbjct: 83 VKIVVYYLLTSAFAVTLGIIMARLFNPGAGIHLAVGGQQFQPHQAPPLVHILLDIVPTNP 142
Query: 139 VAPFLESQVIGILLISGSIGIATHFITDK------HIKSSTIVFFEGIHSIFLTITNWVM 192
QV+ + + +GIA ++ + + + G+ I N VM
Sbjct: 143 FGALANGQVLPTIFFAIILGIAITYLMNSENEKVRKSAETLLDAINGLAEAMYKIVNGVM 202
Query: 193 KIIPIALGSFIAVTILQFKKGLNISGLGEYLSVVILSNLIQGFIVLPVILYIKGFNPLTI 252
+ PI + + IA + + + + L + + V + +Q +V V+L I G +P++
Sbjct: 203 QYAPIGVFALIAYVMAEQGVHV-VGELAKVTAAVYVGLTLQILLVYFVLLKIYGIDPISF 261
Query: 253 VKGMFPALAVAFFSKSSAGTLPVTMRTAEKNLNISPEVSRSILPFCTSINMNGCAAFICI 312
+K A+ AF ++SS+GTLPVTMR A++ + IS + LP +INM+G A + +
Sbjct: 262 IKHAKDAMLTAFVTRSSSGTLPVTMRVAKE-MGISEGIYSFTLPLGATINMDGTALYQGV 320
Query: 313 TLIYVMQNNGIEATFSTLFLWILMASVISAIGTAGVPMGCFFLSASLLTNMGIPINI--- 369
++ G T +L A V+++IGTAGVP + A +L ++G+P+
Sbjct: 321 CTFFIANALGSHLTVGQQLTIVLTA-VLASIGTAGVPGAGAIMLAMVLHSVGLPLTDPNV 379
Query: 370 ---MSMILPFYSIVDMFETTLNVWSDSCVTVIVNKS 402
+MIL +I+DM T +NV D T IV K+
Sbjct: 380 AAAYAMILGIDAILDMGRTMVNVTGDLTGTAIVAKT 415
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl reductase,
beta-ketoacyl synthase, dehydratase; 4.00A
{Saccharomyces cerevisiae}
Length = 2006
Score = 56.9 bits (137), Expect = 9e-09
Identities = 73/379 (19%), Positives = 118/379 (31%), Gaps = 146/379 (38%)
Query: 55 ISLPLISLSLIVSLSK-CVPEQGMGKLWGKTVFYTMLTTMLAASVALCT---YGLISPSN 110
IS PLI + + L+ V KL G T L + L + T GL+
Sbjct: 236 ISCPLIGV---IQLAHYVV----TAKLLGFTP--GELRSYLKGA----TGHSQGLV---- 278
Query: 111 MITKPDVAVNIGKMNFWNYVANLIPNNVVAPFLES--QVIGILLISGSIGIATH------ 162
AV I + + W F S + I +L IG+ +
Sbjct: 279 ------TAVAIAETDSW------------ESFFVSVRKAITVLF---FIGVRCYEAYPNT 317
Query: 163 FITDKHIKSSTIVFFEGIHSIFLTITNWVMKIIPI-ALGSFIAVTILQFKKGLNISGLGE 221
+ ++ S + EG+ S L+I+N + + ++ T N S L
Sbjct: 318 SLPPSILEDS-LENNEGVPSPMLSISN-----LTQEQVQDYVNKT--------N-SHLPA 362
Query: 222 YLSVVI-LSNLIQGFIV--LPVILYIKGFNPLTIVKGMFPALAVAFFSKSSAGT----LP 274
V I L N + +V P LY G N LT+ K +K+ +G +P
Sbjct: 363 GKQVEISLVNGAKNLVVSGPPQSLY--GLN-LTLRK-----------AKAPSGLDQSRIP 408
Query: 275 VTMRTAEKNLNISPEVSRSILPFCTSINMNGCAAFICITLIYVMQNNGIEATFSTLFLWI 334
+ R K + S LP + + F + L
Sbjct: 409 FSER---K-----LKFSNRFLP--------------------------VASPFHSHLLVP 434
Query: 335 LMASVISAIGTAGVPMGCFFLSASLLTNMGIPI-------NIMSM---ILPFYSIVDMFE 384
+ + V +A + IP+ ++ + I IVD
Sbjct: 435 ASDLINKDLVKNNVS-----FNAKDI---QIPVYDTFDGSDLRVLSGSISE--RIVDCI- 483
Query: 385 TTLNV-WSDSCV---TVIV 399
L V W + T I+
Sbjct: 484 IRLPVKWETTTQFKATHIL 502
Score = 30.3 bits (68), Expect = 0.79
Identities = 66/427 (15%), Positives = 122/427 (28%), Gaps = 162/427 (37%)
Query: 55 ISL-PLISL---SLIVSLSKCVPEQGMGKLWGKTVFYTMLTTMLAASVALCTYGLISPSN 110
S PL +L SL L VP + + L + T G +
Sbjct: 4 YSTRPL-TLSHGSLEHVLL--VPTA----SF---FIASQLQEQFNKILPEPTEGFAADDE 53
Query: 111 MITKPDVAVNIGKMNFWNYVANLIPNNVVAPFLESQVIGILL-------ISGS-I-GIAT 161
T ++ F YV++L+ + V F + V+ + L + G+ I +A
Sbjct: 54 PTTPAELVGK-----FLGYVSSLVEPSKVGQFDQ--VLNLCLTEFENCYLEGNDIHALAA 106
Query: 162 HFITDKHI---KSSTIV--FFEGIHSIFLTITNWVMKIIPIALGSFIAVTILQFK----- 211
+ + K+ ++ + K AL F AV +
Sbjct: 107 KLLQENDTTLVKTKELIKNYITARIMAKRPFD----KKSNSAL--FRAVGEGNAQLVAIF 160
Query: 212 --KGLNISG----LGE----YLSVV-----ILSNLIQGFIVLPVI---LYIKGFNPLTIV 253
+G N L + Y +V + + I + ++ +G N L +
Sbjct: 161 GGQG-NTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWL 219
Query: 254 KGMFPALAVAFFSKSSAGTLPVTM-----------RTAEKNLNISP-EVSRSILPFCT-- 299
+ + S P++ K L +P E+ RS L T
Sbjct: 220 ENPSNTPDKDYLL--SI---PISCPLIGVIQLAHYVVTAKLLGFTPGEL-RSYLKGATGH 273
Query: 300 SINMNGCAAFICITLIYVMQNNGIEATFSTLFLWILMASVISAIGTAGVPMGCFFLSASL 359
S Q G+ + A I+ + S
Sbjct: 274 S------------------Q--GL-----------VTAVAIAE-------------TDSW 289
Query: 360 LTNMGIPINIMSMILPFYSIVDMFETTLNVWSDSCVTVI------VNKSYPKSSDHPENA 413
+ F+ +TV+ ++YP +S P +
Sbjct: 290 ES--------------FFVS-----------VRKAITVLFFIGVRCYEAYPNTSLPP--S 322
Query: 414 IVQNSVE 420
I+++S+E
Sbjct: 323 ILEDSLE 329
Score = 29.5 bits (66), Expect = 1.3
Identities = 40/191 (20%), Positives = 76/191 (39%), Gaps = 55/191 (28%)
Query: 125 NFWNYVANLIPNNVVAPFLESQVIGIL--LISGSIGIATHFITDK--HIKSS-TIVFFEG 179
+ WN N F ++ IL +I+ + + HF +K I+ + + + FE
Sbjct: 1644 DVWNRADN--------HFKDTYGFSILDIVINNPVNLTIHFGGEKGKRIRENYSAMIFET 1695
Query: 180 I-------HSIFLTI----TNWVMK----IIPIALGSFIAVTILQ---FK----KGL--- 214
I IF I T++ + ++ + A+T+++ F+ KGL
Sbjct: 1696 IVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQPALTLMEKAAFEDLKSKGLIPA 1755
Query: 215 --NISG--LGEYLSVVILSNLIQGFIVLPVILYIKGFNPLTIVK---------GMF---P 258
+G LGEY ++ L++++ ++ V+ Y +G V GM P
Sbjct: 1756 DATFAGHSLGEYAALASLADVMSIESLVEVVFY-RGMTMQVAVPRDELGRSNYGMIAINP 1814
Query: 259 ALAVAFFSKSS 269
A FS+ +
Sbjct: 1815 GRVAASFSQEA 1825
>3i26_A Hemagglutinin-esterase; SGNH-hydrolase fold, swiss roll, envelope
protein, glycoprotein, membrane, transmembrane, virion,
cell membrane; HET: NAG BMA MAN; 1.80A {Breda virus
serotype 1} PDB: 3i27_A*
Length = 384
Score = 27.6 bits (61), Expect = 5.8
Identities = 24/100 (24%), Positives = 36/100 (36%), Gaps = 10/100 (10%)
Query: 70 KCVPEQGMGKLWGKTVFYTMLTTMLAASVALCTYGLISPSNMITKPDVAVNIGKMNFWNY 129
C E G + KT FYT L M S + L +PS++ T + + N
Sbjct: 93 SCWDEGVDGWIELKTRFYTKLYQMATTSRCIKLIQLQAPSSLPTLQA---GVCRTN---- 145
Query: 130 VANLIPNNVVAPFLESQVIGILLISGSIGIATHFITDKHI 169
+P+N L V + G + I KH+
Sbjct: 146 --KQLPDNPRLALLSDTVPTSVQFV-LPGSSGTTICTKHL 182
>3cl5_A Hemagglutinin-esterase; SGNH-hydrolase fold, swiss roll, envelope
protein, glycoprotein, membrane, transmembrane, virio;
HET: NAG SIO; 1.80A {Bovine coronavirus} PDB: 3cl4_A*
Length = 377
Score = 27.1 bits (60), Expect = 7.4
Identities = 15/70 (21%), Positives = 23/70 (32%), Gaps = 12/70 (17%)
Query: 70 KCVPEQGMGKLW--GKTVFYTMLTTMLAASVALCTYGLISPSNMITKPDVAVNIGKMNFW 127
KC G +W K +FYT + +A +L + N + G
Sbjct: 94 KCTTS-GSNDIWMQNKGLFYTQVYKNMAVYRSLTFVNVPYVYNGSAQSTALCKSGS---- 148
Query: 128 NYVANLIPNN 137
L+ NN
Sbjct: 149 -----LVLNN 153
>3k07_A Cation efflux system protein CUSA; transmembrane helix, cell inner
membrane, cell membrane, COP transport, ION transport,
membrane; 3.52A {Escherichia coli k-12} PDB: 3kso_A
3kss_A
Length = 1055
Score = 26.6 bits (58), Expect = 9.3
Identities = 11/81 (13%), Positives = 28/81 (34%)
Query: 309 FICITLIYVMQNNGIEATFSTLFLWILMASVISAIGTAGVPMGCFFLSASLLTNMGIPIN 368
I + + E + + + V SA+ ++ ++ G+ N
Sbjct: 338 LIDRAIDNLSGKLLEEFIVVAVVCALFLWHVRSALVAIISLPLGLCIAFIVMHFQGLNAN 397
Query: 369 IMSMILPFYSIVDMFETTLNV 389
IMS+ ++ M + + +
Sbjct: 398 IMSLGGIAIAVGAMVDAAIVM 418
Database: pdb70
Posted date: Jan 26, 2011 11:21 AM
Number of letters in database: 5,693,230
Number of sequences in database: 24,244
Lambda K H
0.326 0.139 0.408
Gapped
Lambda K H
0.267 0.0568 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24244
Number of Hits to DB: 3,362,384
Number of extensions: 147828
Number of successful extensions: 352
Number of sequences better than 10.0: 1
Number of HSP's gapped: 345
Number of HSP's successfully gapped: 18
Length of query: 420
Length of database: 5,693,230
Length adjustment: 95
Effective length of query: 325
Effective length of database: 3,390,050
Effective search space: 1101766250
Effective search space used: 1101766250
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 58 (26.5 bits)