RPS-BLAST 2.2.22 [Sep-27-2009]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= gi|254781171|ref|YP_003065584.1| hypothetical protein
CLIBASIA_05390 [Candidatus Liberibacter asiaticus str. psy62]
         (420 letters)



>d2nwwa1 f.49.1.1 (A:12-416) Proton glutamate symport protein
           {Pyrococcus horikoshii [TaxId: 53953]}
          Length = 405

 Score =  140 bits (354), Expect = 2e-34
 Identities = 100/396 (25%), Positives = 184/396 (46%), Gaps = 20/396 (5%)

Query: 23  ILIGIFSGTTDYV-IFNETAEFIVNVFVRIFKFISLPLISLSLIVSLSKCVPEQGMGKLW 81
            ++G+  G   Y    +   +   ++FVR+ K + +P++  SL+V  +   P + +G++ 
Sbjct: 13  AIVGLILGHYGYAHAVHTYVKPFGDLFVRLLKMLVMPIVFASLVVGAASISPAR-LGRVG 71

Query: 82  GKTVFYTMLTTMLAASVALCTYGLISPSNMIT---KPDVAVNIGKMNFWNYVANLIPNNV 138
            K V Y +LT+  A ++ +    L +P   I                  + + +++P N 
Sbjct: 72  VKIVVYYLLTSAFAVTLGIIMARLFNPGAGIHLAVGGQQFQPHQAPPLVHILLDIVPTNP 131

Query: 139 VAPFLESQVIGILLISGSIGIATHFITDK------HIKSSTIVFFEGIHSIFLTITNWVM 192
                  QV+  +  +  +GIA  ++ +           + +    G+      I N VM
Sbjct: 132 FGALANGQVLPTIFFAIILGIAITYLMNSENEKVRKSAETLLDAINGLAEAMYKIVNGVM 191

Query: 193 KIIPIALGSFIAVTILQFKKGLNISGLGEYLSVVILSNLIQGFIVLPVILYIKGFNPLTI 252
           +  PI + + IA  + +    +      +  + V +   +Q  +V  V+L I G +P++ 
Sbjct: 192 QYAPIGVFALIAYVMAEQGVHVVGEL-AKVTAAVYVGLTLQILLVYFVLLKIYGIDPISF 250

Query: 253 VKGMFPALAVAFFSKSSAGTLPVTMRTAEKNLNISPEVSRSILPFCTSINMNGCAAFICI 312
           +K    A+  AF ++SS+GTLPVTMR A++ + IS  +    LP   +INM+G A +  +
Sbjct: 251 IKHAKDAMLTAFVTRSSSGTLPVTMRVAKE-MGISEGIYSFTLPLGATINMDGTALYQGV 309

Query: 313 TLIYVMQNNGIEATFSTLFLWILMASVISAIGTAGVPMGCFFLSASLLTNMGIPINI--- 369
              ++    G   T       +L A V+++IGTAGVP     + A +L ++G+P+     
Sbjct: 310 CTFFIANALGSHLTVGQQLTIVLTA-VLASIGTAGVPGAGAIMLAMVLHSVGLPLTDPNV 368

Query: 370 ---MSMILPFYSIVDMFETTLNVWSDSCVTVIVNKS 402
               +MIL   +I+DM  T +NV  D   T IV K+
Sbjct: 369 AAAYAMILGIDAILDMGRTMVNVTGDLTGTAIVAKT 404


>d1kcza1 c.1.11.2 (A:161-413) beta-Methylaspartase {Clostridium
           tetanomorphum [TaxId: 1553]}
          Length = 253

 Score = 26.5 bits (58), Expect = 4.1
 Identities = 12/57 (21%), Positives = 22/57 (38%), Gaps = 4/57 (7%)

Query: 74  EQGMGKLWGKTVFYTMLTTMLAASVALCTYGLISPSNMITKPDVAVNIGKMNFWNYV 130
             GMG   G T   T  +  +  ++ +          ++ KP + V+ G M   N +
Sbjct: 190 ANGMGAYCGGTCNETNRSAEVTTNIGMAC----GARQVLAKPGMGVDEGMMIVKNEM 242


>d1xp4a1 b.105.1.1 (A:294-386) D,D-carboxypeptidase DacA, C-terminal
           domain {Streptococcus pneumoniae [TaxId: 1313]}
          Length = 93

 Score = 26.4 bits (58), Expect = 5.3
 Identities = 10/60 (16%), Positives = 18/60 (30%), Gaps = 2/60 (3%)

Query: 110 NMITKPDVAVNIGKMNFWNYVANLI--PNNVVAPFLESQVIGILLISGSIGIATHFITDK 167
             +   D+ +     N  +           + AP     V+G L       I   +IT +
Sbjct: 28  IAVAPEDIYLIERVGNQSSQSVQFTPDSKAIPAPLEAGTVVGHLTYEDKDLIGQGYITTE 87


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.326    0.139    0.408 

Gapped
Lambda     K      H
   0.267   0.0517    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,466,731
Number of extensions: 65204
Number of successful extensions: 159
Number of sequences better than 10.0: 1
Number of HSP's gapped: 152
Number of HSP's successfully gapped: 8
Length of query: 420
Length of database: 2,407,596
Length adjustment: 88
Effective length of query: 332
Effective length of database: 1,199,356
Effective search space: 398186192
Effective search space used: 398186192
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 54 (25.1 bits)