RPS-BLAST 2.2.22 [Sep-27-2009] Database: scop70_1_75 13,730 sequences; 2,407,596 total letters Searching..................................................done Query= gi|254781171|ref|YP_003065584.1| hypothetical protein CLIBASIA_05390 [Candidatus Liberibacter asiaticus str. psy62] (420 letters) >d2nwwa1 f.49.1.1 (A:12-416) Proton glutamate symport protein {Pyrococcus horikoshii [TaxId: 53953]} Length = 405 Score = 140 bits (354), Expect = 2e-34 Identities = 100/396 (25%), Positives = 184/396 (46%), Gaps = 20/396 (5%) Query: 23 ILIGIFSGTTDYV-IFNETAEFIVNVFVRIFKFISLPLISLSLIVSLSKCVPEQGMGKLW 81 ++G+ G Y + + ++FVR+ K + +P++ SL+V + P + +G++ Sbjct: 13 AIVGLILGHYGYAHAVHTYVKPFGDLFVRLLKMLVMPIVFASLVVGAASISPAR-LGRVG 71 Query: 82 GKTVFYTMLTTMLAASVALCTYGLISPSNMIT---KPDVAVNIGKMNFWNYVANLIPNNV 138 K V Y +LT+ A ++ + L +P I + + +++P N Sbjct: 72 VKIVVYYLLTSAFAVTLGIIMARLFNPGAGIHLAVGGQQFQPHQAPPLVHILLDIVPTNP 131 Query: 139 VAPFLESQVIGILLISGSIGIATHFITDK------HIKSSTIVFFEGIHSIFLTITNWVM 192 QV+ + + +GIA ++ + + + G+ I N VM Sbjct: 132 FGALANGQVLPTIFFAIILGIAITYLMNSENEKVRKSAETLLDAINGLAEAMYKIVNGVM 191 Query: 193 KIIPIALGSFIAVTILQFKKGLNISGLGEYLSVVILSNLIQGFIVLPVILYIKGFNPLTI 252 + PI + + IA + + + + + V + +Q +V V+L I G +P++ Sbjct: 192 QYAPIGVFALIAYVMAEQGVHVVGEL-AKVTAAVYVGLTLQILLVYFVLLKIYGIDPISF 250 Query: 253 VKGMFPALAVAFFSKSSAGTLPVTMRTAEKNLNISPEVSRSILPFCTSINMNGCAAFICI 312 +K A+ AF ++SS+GTLPVTMR A++ + IS + LP +INM+G A + + Sbjct: 251 IKHAKDAMLTAFVTRSSSGTLPVTMRVAKE-MGISEGIYSFTLPLGATINMDGTALYQGV 309 Query: 313 TLIYVMQNNGIEATFSTLFLWILMASVISAIGTAGVPMGCFFLSASLLTNMGIPINI--- 369 ++ G T +L A V+++IGTAGVP + A +L ++G+P+ Sbjct: 310 CTFFIANALGSHLTVGQQLTIVLTA-VLASIGTAGVPGAGAIMLAMVLHSVGLPLTDPNV 368 Query: 370 ---MSMILPFYSIVDMFETTLNVWSDSCVTVIVNKS 402 +MIL +I+DM T +NV D T IV K+ Sbjct: 369 AAAYAMILGIDAILDMGRTMVNVTGDLTGTAIVAKT 404 >d1kcza1 c.1.11.2 (A:161-413) beta-Methylaspartase {Clostridium tetanomorphum [TaxId: 1553]} Length = 253 Score = 26.5 bits (58), Expect = 4.1 Identities = 12/57 (21%), Positives = 22/57 (38%), Gaps = 4/57 (7%) Query: 74 EQGMGKLWGKTVFYTMLTTMLAASVALCTYGLISPSNMITKPDVAVNIGKMNFWNYV 130 GMG G T T + + ++ + ++ KP + V+ G M N + Sbjct: 190 ANGMGAYCGGTCNETNRSAEVTTNIGMAC----GARQVLAKPGMGVDEGMMIVKNEM 242 >d1xp4a1 b.105.1.1 (A:294-386) D,D-carboxypeptidase DacA, C-terminal domain {Streptococcus pneumoniae [TaxId: 1313]} Length = 93 Score = 26.4 bits (58), Expect = 5.3 Identities = 10/60 (16%), Positives = 18/60 (30%), Gaps = 2/60 (3%) Query: 110 NMITKPDVAVNIGKMNFWNYVANLI--PNNVVAPFLESQVIGILLISGSIGIATHFITDK 167 + D+ + N + + AP V+G L I +IT + Sbjct: 28 IAVAPEDIYLIERVGNQSSQSVQFTPDSKAIPAPLEAGTVVGHLTYEDKDLIGQGYITTE 87 Database: scop70_1_75 Posted date: Mar 27, 2010 6:21 PM Number of letters in database: 2,407,596 Number of sequences in database: 13,730 Lambda K H 0.326 0.139 0.408 Gapped Lambda K H 0.267 0.0517 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 13730 Number of Hits to DB: 1,466,731 Number of extensions: 65204 Number of successful extensions: 159 Number of sequences better than 10.0: 1 Number of HSP's gapped: 152 Number of HSP's successfully gapped: 8 Length of query: 420 Length of database: 2,407,596 Length adjustment: 88 Effective length of query: 332 Effective length of database: 1,199,356 Effective search space: 398186192 Effective search space used: 398186192 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 54 (25.1 bits)