HHsearch alignment for GI: 254781172 and conserved domain: COG0272

>COG0272 Lig NAD-dependent DNA ligase (contains BRCT domain type II) [DNA replication, recombination, and repair].
Probab=90.75  E-value=0.25  Score=29.47  Aligned_cols=82  Identities=17%  Similarity=0.373  Sum_probs=42.1

Q ss_pred             CCCCCHHHHHHHHHHHHHCCCCCCEEEEEHHHHCCHHHHHHHHCCC---CCCCCCCCCCHHHHHHHHH---HHHHHHHHH
Q ss_conf             1231035410355556530576540454101101067775310001---0001342100145689999---875223466
Q gi|254781172|r  478 RDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTK---IENILGFGDVSVTNLYDSI---NKRRNISLE  551 (731)
Q Consensus       478 K~aldI~GLG~k~Ie~L~e~~~~~g~I~~~~DLy~L~~~~~~~~~~---l~~l~GfgeKsa~nL~~sI---e~sK~~~L~  551 (731)
T Consensus       479 ~~l~~l~~~~~ks~~nLl~a---------------Ie~sK~~~l~r~l~aLGIr~VG~~~Ak~La~~f~sl~~l~~a~~e  543 (667)
T COG0272         479 EDLLSLEGFGEKSAENLLNA---------------IEKSKKQPLARFLYALGIRHVGETTAKSLARHFGTLEALLAASEE  543 (667)
T ss_pred             HHHHHCCCHHHHHHHHHHHH---------------HHHHCCCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCHH
T ss_conf             88841622446579999999---------------998604989999998797114089999999876029999842999


Q ss_pred             HHHHHCCHHHHHHHHHHHHHHHCCCH
Q ss_conf             67763010111168999999882998
Q gi|254781172|r  552 RFIFSLGIRHVGAEIARSLAKYYLSY  577 (731)
Q Consensus       552 r~L~ALGI~~vG~~~Ak~La~~f~si  577 (731)
T Consensus       544 ~l---~~i~giG~~vA~si~~ff~~~  566 (667)
T COG0272         544 EL---ASIPGIGEVVARSIIEFFANE  566 (667)
T ss_pred             HH---HHCCCHHHHHHHHHHHHHCCH
T ss_conf             99---506661289999999997277