HHsearch alignment for GI: 254781172 and conserved domain: COG0272
>COG0272 Lig NAD-dependent DNA ligase (contains BRCT domain type II) [DNA replication, recombination, and repair].
Probab=90.75 E-value=0.25 Score=29.47 Aligned_cols=82 Identities=17% Similarity=0.373 Sum_probs=42.1
Q ss_pred CCCCCHHHHHHHHHHHHHCCCCCCEEEEEHHHHCCHHHHHHHHCCC---CCCCCCCCCCHHHHHHHHH---HHHHHHHHH
Q ss_conf 1231035410355556530576540454101101067775310001---0001342100145689999---875223466
Q gi|254781172|r 478 RDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTK---IENILGFGDVSVTNLYDSI---NKRRNISLE 551 (731)
Q Consensus 478 K~aldI~GLG~k~Ie~L~e~~~~~g~I~~~~DLy~L~~~~~~~~~~---l~~l~GfgeKsa~nL~~sI---e~sK~~~L~ 551 (731)
T Consensus 479 ~~l~~l~~~~~ks~~nLl~a---------------Ie~sK~~~l~r~l~aLGIr~VG~~~Ak~La~~f~sl~~l~~a~~e 543 (667)
T COG0272 479 EDLLSLEGFGEKSAENLLNA---------------IEKSKKQPLARFLYALGIRHVGETTAKSLARHFGTLEALLAASEE 543 (667)
T ss_pred HHHHHCCCHHHHHHHHHHHH---------------HHHHCCCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCHH
T ss_conf 88841622446579999999---------------998604989999998797114089999999876029999842999
Q ss_pred HHHHHCCHHHHHHHHHHHHHHHCCCH
Q ss_conf 67763010111168999999882998
Q gi|254781172|r 552 RFIFSLGIRHVGAEIARSLAKYYLSY 577 (731)
Q Consensus 552 r~L~ALGI~~vG~~~Ak~La~~f~si 577 (731)
T Consensus 544 ~l---~~i~giG~~vA~si~~ff~~~ 566 (667)
T COG0272 544 EL---ASIPGIGEVVARSIIEFFANE 566 (667)
T ss_pred HH---HHCCCHHHHHHHHHHHHHCCH
T ss_conf 99---506661289999999997277