HHsearch alignment for GI: 254781172 and conserved domain: PHA02142

>PHA02142 putative RNA ligase.
Probab=97.37  E-value=0.0027  Score=44.70  Aligned_cols=148  Identities=18%  Similarity=0.119  Sum_probs=80.5

Q ss_pred             CCCEEEEEEECCEEEEEEEEE---------------------CCEEEEEEECCCCHHHHH---HHHHHHHHCCCCCCCCC
Q ss_conf             761199994158189999985---------------------998998886598655666---99977531024322335
Q gi|254781172|r  124 NSIFFTLEPKIDGTMITIRYE---------------------KGKFVYAALRGDGHSGED---VSACIRAIPTIPRVLSL  179 (731)
Q Consensus       124 ~~~~~~vepKiDG~sisl~Y~---------------------~G~L~~a~TRGdG~~GeD---VT~n~~~i~~iP~~l~~  179 (731)
T Consensus       167 ~~~~~~vTeKLDGsS~tvy~v~~~~~~~~~g~~~~~~~~~~~~~~f--gvcsrn~~L~~~~~n~yW~~a~~~~i~~~l~-  243 (366)
T PHA02142        167 ADVKFAKSLKLDGSSITMAWVTDPDLFLDLGTEDEPYAHDYDDAQF--IVASRNQVLRYNADSKWWKGVENYQIVDRLK-  243 (366)
T ss_pred             CCCEEEEEEEECCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCE--EEECCCEEEEECCCCHHHHHHHHCCCHHHHH-
T ss_conf             7926999997525358999814774000134235665444456640--6861642563178872999988758288997-


Q ss_pred             CCCCEEEEEEEEEEECHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCHHHHHCCCEEEEEEECCCCCCCCCCCHHHHH
Q ss_conf             44550489999998520212345564314854334234567777523455553011105664102454332100003689
Q gi|254781172|r  180 NIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEMLQ  259 (731)
Q Consensus       180 ~~~~~ieiRGEv~m~~~~F~~lN~~~~~~g~~~f~NpRN~aaG~lr~~d~~~~~r~L~f~ay~~~~~~~~~~~~~~e~l~  259 (731)
T Consensus       244 klg~nIAIQGEliGpgI----------------QgN~y~l--------------~~~~f~vF~v~dId~~ryl~~~e~~~  293 (366)
T PHA02142        244 ELGMSVAIQGELMGPGI----------------QKNRENF--------------DKYRIFAFRAWFIDEQRFATDEEFQD  293 (366)
T ss_pred             HCCCCEEEEEEEECCCC----------------CCCCCCC--------------CCCEEEEEEEEECCCCEECCHHHHHH
T ss_conf             54872799888876543----------------5764457--------------88669999999828867778899999


Q ss_pred             HHHHCCCCCCCCEEE------EECCCCHHHHHHHHHHHHCCCCCCCCCEEEEECC
Q ss_conf             999759966541488------7403211345566553100112343763777311
Q gi|254781172|r  260 KMRCLGFPVNNGVRQ------ANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE  308 (731)
Q Consensus       260 ~L~~~GF~v~~~~~~------~~~~~~~~~~~~~~~~~r~~l~y~iDGiVikvn~  308 (731)
T Consensus       294 ~~~~lgl~~VPvlgy~~~~~~~~sv~ell~~Ae----~~~~~~~~REGiV~rs~~  344 (366)
T PHA02142        294 LCRTLGMEIVPQLGYSYPFQEFTNVKEMLAAAD----IPSINHKIAEGVVYKSVE  344 (366)
T ss_pred             HHHHCCCCEEEECCCCCCCCCCCCHHHHHHHCC----CCCCCCCCCCEEEEEECC
T ss_conf             998769962404265454343212999975422----788788611329996326