HHsearch alignment for GI: 254781172 and conserved domain: PHA02142
>PHA02142 putative RNA ligase.
Probab=97.37 E-value=0.0027 Score=44.70 Aligned_cols=148 Identities=18% Similarity=0.119 Sum_probs=80.5
Q ss_pred CCCEEEEEEECCEEEEEEEEE---------------------CCEEEEEEECCCCHHHHH---HHHHHHHHCCCCCCCCC
Q ss_conf 761199994158189999985---------------------998998886598655666---99977531024322335
Q gi|254781172|r 124 NSIFFTLEPKIDGTMITIRYE---------------------KGKFVYAALRGDGHSGED---VSACIRAIPTIPRVLSL 179 (731)
Q Consensus 124 ~~~~~~vepKiDG~sisl~Y~---------------------~G~L~~a~TRGdG~~GeD---VT~n~~~i~~iP~~l~~ 179 (731)
T Consensus 167 ~~~~~~vTeKLDGsS~tvy~v~~~~~~~~~g~~~~~~~~~~~~~~f--gvcsrn~~L~~~~~n~yW~~a~~~~i~~~l~- 243 (366)
T PHA02142 167 ADVKFAKSLKLDGSSITMAWVTDPDLFLDLGTEDEPYAHDYDDAQF--IVASRNQVLRYNADSKWWKGVENYQIVDRLK- 243 (366)
T ss_pred CCCEEEEEEEECCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCE--EEECCCEEEEECCCCHHHHHHHHCCCHHHHH-
T ss_conf 7926999997525358999814774000134235665444456640--6861642563178872999988758288997-
Q ss_pred CCCCEEEEEEEEEEECHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCHHHHHCCCEEEEEEECCCCCCCCCCCHHHHH
Q ss_conf 44550489999998520212345564314854334234567777523455553011105664102454332100003689
Q gi|254781172|r 180 NIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEMLQ 259 (731)
Q Consensus 180 ~~~~~ieiRGEv~m~~~~F~~lN~~~~~~g~~~f~NpRN~aaG~lr~~d~~~~~r~L~f~ay~~~~~~~~~~~~~~e~l~ 259 (731)
T Consensus 244 klg~nIAIQGEliGpgI----------------QgN~y~l--------------~~~~f~vF~v~dId~~ryl~~~e~~~ 293 (366)
T PHA02142 244 ELGMSVAIQGELMGPGI----------------QKNRENF--------------DKYRIFAFRAWFIDEQRFATDEEFQD 293 (366)
T ss_pred HCCCCEEEEEEEECCCC----------------CCCCCCC--------------CCCEEEEEEEEECCCCEECCHHHHHH
T ss_conf 54872799888876543----------------5764457--------------88669999999828867778899999
Q ss_pred HHHHCCCCCCCCEEE------EECCCCHHHHHHHHHHHHCCCCCCCCCEEEEECC
Q ss_conf 999759966541488------7403211345566553100112343763777311
Q gi|254781172|r 260 KMRCLGFPVNNGVRQ------ANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308 (731)
Q Consensus 260 ~L~~~GF~v~~~~~~------~~~~~~~~~~~~~~~~~r~~l~y~iDGiVikvn~ 308 (731)
T Consensus 294 ~~~~lgl~~VPvlgy~~~~~~~~sv~ell~~Ae----~~~~~~~~REGiV~rs~~ 344 (366)
T PHA02142 294 LCRTLGMEIVPQLGYSYPFQEFTNVKEMLAAAD----IPSINHKIAEGVVYKSVE 344 (366)
T ss_pred HHHHCCCCEEEECCCCCCCCCCCCHHHHHHHCC----CCCCCCCCCCEEEEEECC
T ss_conf 998769962404265454343212999975422----788788611329996326