HHsearch alignment for GI: 254781172 and conserved domain: PRK00116
>PRK00116 ruvA Holliday junction DNA helicase RuvA; Reviewed.
Probab=96.74 E-value=0.037 Score=35.89 Aligned_cols=73 Identities=27% Similarity=0.358 Sum_probs=51.5
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHCCC
Q ss_conf 10001342100145689999875223466677630101111689999998829989999978977612511778761388
Q gi|254781172|r 523 KIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVP 602 (731)
Q Consensus 523 ~l~~l~GfgeKsa~nL~~sIe~sK~~~L~r~L~ALGI~~vG~~~Ak~La~~f~si~~l~~~~~~~~~~~~~~~e~L~~I~ 602 (731)
T Consensus 56 d~~~LyGF~~~~Er~~F~~L--------------i~V~GIGpK~AL~ILs~~-~~~~l~~aI~------~~D~~~L~~vp 114 (198)
T PRK00116 56 DAQLLYGFLTKEERELFRLL--------------ISVSGVGPKLALAILSGL-SPEELAQAIA------NGDIKALTKVP 114 (198)
T ss_pred CCCEEEEECCHHHHHHHHHH--------------HCCCCCCHHHHHHHHCCC-CHHHHHHHHH------HCCHHHHCCCC
T ss_conf 88757840888999999998--------------566885789999887029-9999999998------58999970688
Q ss_pred CCCHHHHHHHHHHH
Q ss_conf 86789999999996
Q gi|254781172|r 603 LVGDIIAQAIVEFY 616 (731)
Q Consensus 603 GiG~~~A~si~~ff 616 (731)
T Consensus 115 GIG~KtA~rIi~EL 128 (198)
T PRK00116 115 GVGKKTAERIVLEL 128 (198)
T ss_pred CCCHHHHHHHHHHH
T ss_conf 97889999999999