HHsearch alignment for GI: 254781172 and conserved domain: PRK00116

>PRK00116 ruvA Holliday junction DNA helicase RuvA; Reviewed.
Probab=96.74  E-value=0.037  Score=35.89  Aligned_cols=73  Identities=27%  Similarity=0.358  Sum_probs=51.5

Q ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHCCC
Q ss_conf             10001342100145689999875223466677630101111689999998829989999978977612511778761388
Q gi|254781172|r  523 KIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVP  602 (731)
Q Consensus       523 ~l~~l~GfgeKsa~nL~~sIe~sK~~~L~r~L~ALGI~~vG~~~Ak~La~~f~si~~l~~~~~~~~~~~~~~~e~L~~I~  602 (731)
T Consensus        56 d~~~LyGF~~~~Er~~F~~L--------------i~V~GIGpK~AL~ILs~~-~~~~l~~aI~------~~D~~~L~~vp  114 (198)
T PRK00116         56 DAQLLYGFLTKEERELFRLL--------------ISVSGVGPKLALAILSGL-SPEELAQAIA------NGDIKALTKVP  114 (198)
T ss_pred             CCCEEEEECCHHHHHHHHHH--------------HCCCCCCHHHHHHHHCCC-CHHHHHHHHH------HCCHHHHCCCC
T ss_conf             88757840888999999998--------------566885789999887029-9999999998------58999970688


Q ss_pred             CCCHHHHHHHHHHH
Q ss_conf             86789999999996
Q gi|254781172|r  603 LVGDIIAQAIVEFY  616 (731)
Q Consensus       603 GiG~~~A~si~~ff  616 (731)
T Consensus       115 GIG~KtA~rIi~EL  128 (198)
T PRK00116        115 GVGKKTAERIVLEL  128 (198)
T ss_pred             CCCHHHHHHHHHHH
T ss_conf             97889999999999