HHsearch alignment for GI: 254781172 and conserved domain: PRK06195
>PRK06195 DNA polymerase III subunit epsilon; Validated.
Probab=99.77 E-value=1.3e-18 Score=163.09 Aligned_cols=77 Identities=31% Similarity=0.531 Sum_probs=73.2
Q ss_pred CCCCCCCEEEEECCCCCCCHHHHHHHHHHCCCEEEEEEECCEEEEEECC---------CCCCHHHHHHHC-----CCEEE
Q ss_conf 8821686699972588998789999999829849981116321799778---------888637989974-----99173
Q gi|254781172|r 644 SSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGD---------NPGSKLEKAQQL-----GVKIM 709 (731)
Q Consensus 644 ~~~l~gk~vV~TGtl~~~~R~e~~~~ie~~Ggkv~sSVSkkT~~LI~ge---------~~gSKl~KA~~L-----gI~Ii 709 (731)
T Consensus 218 ~~~~~g~~vvfTG~l~~~~R~ea~~~~~~~Gg~v~~sVskkT~~lV~G~~d~~~~~~~~~~sK~~kA~~L~~~G~~I~ii 297 (309)
T PRK06195 218 FTAFKEEVVVFTGGLASMTRDEAIGLVRRLGGTVGSSVTKKTTYLVTNTKDIEDLNREEMSNKLKKAIDLKKEGQNIKFL 297 (309)
T ss_pred CCCCCCCEEEEECCCCCCCHHHHHHHHHHCCCEECCCCCCCCCEEEECCCCHHHCCCCCCCHHHHHHHHHHHCCCCCEEE
T ss_conf 89878998999457997799999999998599966871677778998886311003677766999999998479996796
Q ss_pred CHHHHHHHHHH
Q ss_conf 79999999988
Q gi|254781172|r 710 NEEQFLFLLQQ 720 (731)
Q Consensus 710 ~e~ef~~ll~~ 720 (731)
T Consensus 298 ~E~~fl~~i~~ 308 (309)
T PRK06195 298 NEEEFLQKIKE 308 (309)
T ss_pred CHHHHHHHHHC
T ss_conf 59999998741