HHsearch alignment for GI: 254781172 and conserved domain: PRK07636
>PRK07636 ligB ATP-dependent DNA ligase; Reviewed.
Probab=98.21 E-value=7.8e-05 Score=56.55 Aligned_cols=160 Identities=21% Similarity=0.282 Sum_probs=96.3
Q ss_pred CCCCEEEEEEECCEEEEEEEEECCEEEEEEECCCCHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEEEEEEECH----HH
Q ss_conf 77611999941581899999859989988865986556669997753102432233544550489999998520----21
Q gi|254781172|r 123 DNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKN----DF 198 (731)
Q Consensus 123 ~~~~~~~vepKiDG~sisl~Y~~G~L~~a~TRGdG~~GeDVT~n~~~i~~iP~~l~~~~~~~ieiRGEv~m~~~----~F 198 (731)
T Consensus 15 ~~~~~W~~E~K~DG~R~~~~~~~g~-v~l~SR----ng~d~t~~fPel~------~~~~~~~~iLDGEiVv~~~~g~~~F 83 (269)
T PRK07636 15 FNSDNYITELKFDGIRLIASKNDGL-IRLYTR----HNNEVTAKFPELL------TLDIPDGTILDGELIVPGSTGAPDF 83 (269)
T ss_pred CCCCCEEEEEEECEEEEEEEEECCE-EEEEEC----CCCCCHHHCHHHH------HHCCCCCEEEECEEEEECCCCCCCH
T ss_conf 8999747885277099999998999-999908----9988333476889------7348854088245899888988898
Q ss_pred HHHHHHHHHCCCCCCCCHHHHHHHHHHCCCHHHHHCCCEEEEEEECCCCCCC--CCCCHHHHHHHHHCCCCCCCCEEEEE
Q ss_conf 2345564314854334234567777523455553011105664102454332--10000368999975996654148874
Q gi|254781172|r 199 LALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIF--AKGQYEMLQKMRCLGFPVNNGVRQAN 276 (731)
Q Consensus 199 ~~lN~~~~~~g~~~f~NpRN~aaG~lr~~d~~~~~r~L~f~ay~~~~~~~~~--~~~~~e~l~~L~~~GF~v~~~~~~~~ 276 (731)
T Consensus 84 ~~lq~r-------------------~~~~---~~~~pv~y~vFDlL~l~G~~L~~~Pl~eRr~~L~~l~~~~-~~~~~~~ 140 (269)
T PRK07636 84 EAVMER-------------------FQSR---KSFYPIVFCVFDVIRIEGVSVTAKPLSERKELLAGLKLDH-PNVKIIE 140 (269)
T ss_pred HHHHHH-------------------HHCC---CCCCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHCCCC-CCEEECC
T ss_conf 999754-------------------5405---8766359999957345864300378999999998643579-9658756
Q ss_pred CCC-CHHHHHHHHHHHHCCCCCCCCCEEEEECCHHCCCCCCCCCCCCCCEE
Q ss_conf 032-11345566553100112343763777311000111587656866312
Q gi|254781172|r 277 TFH-GIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMI 326 (731)
Q Consensus 277 ~~~-~~~~~~~~~~~~r~~l~y~iDGiVikvn~~~~q~~lG~ts~~Prwai 326 (731)
T Consensus 141 ~~~~~~~~~~~~a~~------~glEGIvaKr~dS~Y~~----G~Rs~~WlK 181 (269)
T PRK07636 141 GVRGHATAYFELVKE------NKLEGIVIKQANSPYAI----NKRSDRWLK 181 (269)
T ss_pred CCCCHHHHHHHHHHH------CCCCEEEECCCCCCCCC----CCCCCCEEE
T ss_conf 554519999999997------69924785179998679----998735089