HHsearch alignment for GI: 254781172 and conserved domain: PRK09125
>PRK09125 DNA ligase; Provisional.
Probab=98.56 E-value=3.1e-05 Score=59.66 Aligned_cols=213 Identities=19% Similarity=0.268 Sum_probs=125.3
Q ss_pred CCCEEEEEEECCEEEEEEEEECCEEEEEEECCCCHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEEEEEEECHHHHHHHH
Q ss_conf 76119999415818999998599899888659865566699977531024322335445504899999985202123455
Q gi|254781172|r 124 NSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALND 203 (731)
Q Consensus 124 ~~~~~~vepKiDG~sisl~Y~~G~L~~a~TRGdG~~GeDVT~n~~~i~~iP~~l~~~~~~~ieiRGEv~m~~~~F~~lN~ 203 (731)
T Consensus 36 ~~~~w~~SeKlDGvRa---~wdG~--~l~SR~----G~~~~a--------P~wf~~~lP~-~~LDGELw~gR~~Fe~--- 94 (277)
T PRK09125 36 DISGYLVSEKLDGVRA---YWDGK--QLLTRQ----GNPIAA--------PAWFTAGFPP-FALDGELWAGRGQFEQ--- 94 (277)
T ss_pred CCCCEEEEEEEEEEEE---EEECC--EEECCC----CCCCCC--------CHHHHHCCCC-CCEEEEEEECCCCHHH---
T ss_conf 8423589874137999---99789--888069----977789--------7788830999-6542468707788999---
Q ss_pred HHHHCCCCCCCCHHHHHHHHHHCCCHHHHH-CCCEEEEEEECCCCCCCCCCCHHHHHHHHHC----CCCCCCC--EEEEE
Q ss_conf 643148543342345677775234555530-1110566410245433210000368999975----9966541--48874
Q gi|254781172|r 204 EMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQYEMLQKMRCL----GFPVNNG--VRQAN 276 (731)
Q Consensus 204 ~~~~~g~~~f~NpRN~aaG~lr~~d~~~~~-r~L~f~ay~~~~~~~~~~~~~~e~l~~L~~~----GF~v~~~--~~~~~ 276 (731)
T Consensus 95 ----------------l~s~Vr~~~p~d~~W~~I~y~VFDlP~~~g-p---f~eR~~~L~~ll~~~~~~~l~~v~q~~v~ 154 (277)
T PRK09125 95 ----------------ISSTVRDQTPDDAEWRKVRFMVFDLPDAGG-D---FEERLAVLRKLLAKLPSPYLKIIEQIPVD 154 (277)
T ss_pred ----------------HHHHHHCCCCCHHHHHEEEEEEEECCCCCC-C---HHHHHHHHHHHHHHCCCCCEEEEEEEEEC
T ss_conf ----------------987883589980443204899986788899-9---99999999999965899718998458979
Q ss_pred CCCCHHHHHHHHHHHHCCCCCCCCCEEEEECCHHCCCCCCCCCCCCCCEEEECCCCCEEEEEEEEEEEEECC-CCEEEEE
Q ss_conf 032113455665531001123437637773110001115876568663123114562158998788994035-6225899
Q gi|254781172|r 277 TFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGR-TGILTPV 355 (731)
Q Consensus 277 ~~~~~~~~~~~~~~~r~~l~y~iDGiVikvn~~~~q~~lG~ts~~PrwaiA~Kf~~e~~~T~v~~I~wqvgR-tG~itPv 355 (731)
T Consensus 155 ~~~~l~~~l~~~~~------~G~EGlmlr~~~~~Y~~--gR---s-~~llK~K-~~~d~E~~Vvg~~~G~Gk~~g~lGa- 220 (277)
T PRK09125 155 SEEALLQFLDQIVA------AGGEGLMLHRPDAPYEA--GR---S-DDLLKLK-PYQDAEATVIGHLPGKGKFAGMLGA- 220 (277)
T ss_pred CHHHHHHHHHHHHH------CCCCEEEEECCCCCCCC--CC---C-CCCEEEE-CCCCEEEEEEEEECCCCCCCCCEEE-
T ss_conf 99999999999996------79838778879996578--89---8-5427873-2364799999677599864684579-
Q ss_pred EEEEEEEECCCEEEEECCCCHHHHHHHCCCCCCCCCCCCCCCCCEEEEEE
Q ss_conf 99743330264000101489899975023454322246844076899983
Q gi|254781172|r 356 ARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKR 405 (731)
Q Consensus 356 a~~ePV~l~G~~V~ratlhN~~~I~~l~~~~~~~~~~~~I~iGd~V~I~R 405 (731)
T Consensus 221 --l~~~~~~G~~f~vGsGfsd~~R------------~~pp~iG~~it~ky 256 (277)
T PRK09125 221 --LLVETPDGREFKIGSGFSDEER------------ENPPKIGSIITYKY 256 (277)
T ss_pred --EEEEECCCCEEEECCCCCHHHH------------CCCCCCCCEEEEEE
T ss_conf --9999689978985899998997------------59976898999998