HHsearch alignment for GI: 254781172 and conserved domain: PRK13901
>PRK13901 ruvA Holliday junction DNA helicase motor protein; Provisional.
Probab=96.08 E-value=0.024 Score=37.36 Aligned_cols=74 Identities=19% Similarity=0.354 Sum_probs=52.0
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHCC
Q ss_conf 01000134210014568999987522346667763010111168999999882998999997897761251177876138
Q gi|254781172|r 522 TKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRV 601 (731)
Q Consensus 522 ~~l~~l~GfgeKsa~nL~~sIe~sK~~~L~r~L~ALGI~~vG~~~Ak~La~~f~si~~l~~~~~~~~~~~~~~~e~L~~I 601 (731)
T Consensus 54 Ed~~~LyGF~~~~Er~~F~~L--------------isVsGIGpk~Al~iLs~~-~~~~l~~aI~------~~D~~~L~~v 112 (196)
T PRK13901 54 EDELKLFGFLNSSEREVFEEL--------------IGVDGIGPRAALRVLSGI-KYNEFRDAID------REDIELISKV 112 (196)
T ss_pred ECCCEEECCCCHHHHHHHHHH--------------HCCCCCCHHHHHHHHCCC-CHHHHHHHHH------HCCHHHHHHC
T ss_conf 167713365988999999998--------------765882689999997579-9999999999------2899998319
Q ss_pred CCCCHHHHHHHHHHH
Q ss_conf 886789999999996
Q gi|254781172|r 602 PLVGDIIAQAIVEFY 616 (731)
Q Consensus 602 ~GiG~~~A~si~~ff 616 (731)
T Consensus 113 pGIG~KtA~rIi~EL 127 (196)
T PRK13901 113 KGIGNKMAGKIFLKL 127 (196)
T ss_pred CCCCHHHHHHHHHHH
T ss_conf 995899999999999