HHsearch alignment for GI: 254781172 and conserved domain: TIGR00575

>TIGR00575 dnlj DNA ligase, NAD-dependent; InterPro: IPR001679 DNA ligase (polydeoxyribonucleotide synthase) is the enzyme that joins two DNA fragments by catalyzing the formation of an internucleotide ester bond between phosphate and deoxyribose. It is active during DNA replication, DNA repair and DNA recombination. There are two forms of DNA ligase: one requires ATP (6.5.1.1 from EC), the other NAD (6.5.1.2 from EC). This family is predominantly composed of NAD-dependent bacterial DNA ligases. They are proteins of about 75 to 85 Kd whose sequence is well conserved , . They also show similarity to yicF, an Escherichia coli hypothetical protein of 63 Kd.; GO: 0003911 DNA ligase (NAD+) activity, 0006260 DNA replication, 0006281 DNA repair.
Probab=96.46  E-value=0.00035  Score=51.51  Aligned_cols=161  Identities=19%  Similarity=0.262  Sum_probs=76.4

Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHHHHHHHHH--HH--CCHHH-HHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHH-
Q ss_conf             001342100145689999875223466677--63--01011-1168999999882998999997897761251177876-
Q gi|254781172|r  525 ENILGFGDVSVTNLYDSINKRRNISLERFI--FS--LGIRH-VGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSL-  598 (731)
Q Consensus       525 ~~l~GfgeKsa~nL~~sIe~sK~~~L~r~L--~A--LGI~~-vG~~~Ak~La~~f~si~~l~~~~~~~~~~~~~~~e~L-  598 (731)
T Consensus       455 mdI~GLG~~~I~~LfE~~Lv~~~~DLY~L~~k~~~Ll~le~~~g~~sa~nLl~a----------Ie---~sK~~pl~RlL  521 (706)
T TIGR00575       455 MDIDGLGEKVIEQLFEEKLVRSVADLYALKEKLEDLLELEGKFGEKSAQNLLSA----------IE---KSKKKPLARLL  521 (706)
T ss_pred             CCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH----------HH---HHHHHHHHHHH
T ss_conf             332222389999998726667856665778899998706403556889999999----------99---85210489999


Q ss_pred             --HCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCHHHHHHHHHHCCCE
Q ss_conf             --138886789999999996697999999999973387765432246882168669997258899878999999982984
Q gi|254781172|r  599 --IRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAV  676 (731)
Q Consensus       599 --~~I~GiG~~~A~si~~ff~~~~n~~~i~~L~~~~~~~~~~~~~~~~~~l~gk~vV~TGtl~~~~R~e~~~~ie~~Ggk  676 (731)
T Consensus       522 ~aLGIr~VG~~~A~~La~~f~t------l~~L~~A~~e------~-~~~--------~~----~f~~s~L~-~~~g~G~~  575 (706)
T TIGR00575       522 FALGIRHVGEVTAKLLAKHFGT------LDKLKAASLE------T-LES--------IY----QFDRSELL-SVEGVGPK  575 (706)
T ss_pred             HHCCCHHHHHHHHHHHHHHCCC------HHHHHHCCHH------H-HHH--------HH----HHCCHHHH-HCCCCHHH
T ss_conf             8628603579999999985588------6899850821------6-778--------87----51605564-10140278


Q ss_pred             EEEEEECCEEEEEEC----CCCCCHHHHHHHCCCEEECHHHHHHHHHHHCCC
Q ss_conf             998111632179977----888863798997499173799999999882865
Q gi|254781172|r  677 VSAILSRKTDIIIVG----DNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNTT  724 (731)
Q Consensus       677 v~sSVSkkT~~LI~g----e~~gSKl~KA~~LgI~Ii~e~ef~~ll~~~~~~  724 (731)
T Consensus       576 vA~~~~~~F~~~~~~~~qPYRta~~~~~L~~~gv~~~~~D~~~~LL~~~~~~  627 (706)
T TIGR00575       576 VAESIVNFFHDPNNLSLQPYRTAELIEKLEELGVNMESEDEFCRLLDQALKE  627 (706)
T ss_pred             HHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
T ss_conf             9999999871200013560468999999988316310113578777642011