HHsearch alignment for GI: 254781172 and conserved domain: TIGR00575
>TIGR00575 dnlj DNA ligase, NAD-dependent; InterPro: IPR001679 DNA ligase (polydeoxyribonucleotide synthase) is the enzyme that joins two DNA fragments by catalyzing the formation of an internucleotide ester bond between phosphate and deoxyribose. It is active during DNA replication, DNA repair and DNA recombination. There are two forms of DNA ligase: one requires ATP (6.5.1.1 from EC), the other NAD (6.5.1.2 from EC). This family is predominantly composed of NAD-dependent bacterial DNA ligases. They are proteins of about 75 to 85 Kd whose sequence is well conserved , . They also show similarity to yicF, an Escherichia coli hypothetical protein of 63 Kd.; GO: 0003911 DNA ligase (NAD+) activity, 0006260 DNA replication, 0006281 DNA repair.
Probab=96.46 E-value=0.00035 Score=51.51 Aligned_cols=161 Identities=19% Similarity=0.262 Sum_probs=76.4
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHHH--HH--CCHHH-HHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHH-
Q ss_conf 001342100145689999875223466677--63--01011-1168999999882998999997897761251177876-
Q gi|254781172|r 525 ENILGFGDVSVTNLYDSINKRRNISLERFI--FS--LGIRH-VGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSL- 598 (731)
Q Consensus 525 ~~l~GfgeKsa~nL~~sIe~sK~~~L~r~L--~A--LGI~~-vG~~~Ak~La~~f~si~~l~~~~~~~~~~~~~~~e~L- 598 (731)
T Consensus 455 mdI~GLG~~~I~~LfE~~Lv~~~~DLY~L~~k~~~Ll~le~~~g~~sa~nLl~a----------Ie---~sK~~pl~RlL 521 (706)
T TIGR00575 455 MDIDGLGEKVIEQLFEEKLVRSVADLYALKEKLEDLLELEGKFGEKSAQNLLSA----------IE---KSKKKPLARLL 521 (706)
T ss_pred CCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH----------HH---HHHHHHHHHHH
T ss_conf 332222389999998726667856665778899998706403556889999999----------99---85210489999
Q ss_pred --HCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCHHHHHHHHHHCCCE
Q ss_conf --138886789999999996697999999999973387765432246882168669997258899878999999982984
Q gi|254781172|r 599 --IRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAV 676 (731)
Q Consensus 599 --~~I~GiG~~~A~si~~ff~~~~n~~~i~~L~~~~~~~~~~~~~~~~~~l~gk~vV~TGtl~~~~R~e~~~~ie~~Ggk 676 (731)
T Consensus 522 ~aLGIr~VG~~~A~~La~~f~t------l~~L~~A~~e------~-~~~--------~~----~f~~s~L~-~~~g~G~~ 575 (706)
T TIGR00575 522 FALGIRHVGEVTAKLLAKHFGT------LDKLKAASLE------T-LES--------IY----QFDRSELL-SVEGVGPK 575 (706)
T ss_pred HHCCCHHHHHHHHHHHHHHCCC------HHHHHHCCHH------H-HHH--------HH----HHCCHHHH-HCCCCHHH
T ss_conf 8628603579999999985588------6899850821------6-778--------87----51605564-10140278
Q ss_pred EEEEEECCEEEEEEC----CCCCCHHHHHHHCCCEEECHHHHHHHHHHHCCC
Q ss_conf 998111632179977----888863798997499173799999999882865
Q gi|254781172|r 677 VSAILSRKTDIIIVG----DNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNTT 724 (731)
Q Consensus 677 v~sSVSkkT~~LI~g----e~~gSKl~KA~~LgI~Ii~e~ef~~ll~~~~~~ 724 (731)
T Consensus 576 vA~~~~~~F~~~~~~~~qPYRta~~~~~L~~~gv~~~~~D~~~~LL~~~~~~ 627 (706)
T TIGR00575 576 VAESIVNFFHDPNNLSLQPYRTAELIEKLEELGVNMESEDEFCRLLDQALKE 627 (706)
T ss_pred HHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
T ss_conf 9999999871200013560468999999988316310113578777642011