HHsearch alignment for GI: 254781172 and conserved domain: TIGR01448
>TIGR01448 recD_rel helicase, RecD/TraA family; InterPro: IPR006345 These sequences represent a family similar to RecD, the exodeoxyribonuclease V alpha chain of IPR006344 from INTERPRO. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD. .
Probab=95.61 E-value=0.057 Score=34.39 Aligned_cols=129 Identities=18% Similarity=0.216 Sum_probs=81.2
Q ss_pred HHHHH-HHHHHHCCCCCHHHHHHHHHHHHHCCCCCCEEEEEHHHHCCHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 46655-33213012310354103555565305765404541011010677753100010001342100145689999875
Q gi|254781172|r 467 QQLER-LKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKR 545 (731)
Q Consensus 467 q~~~~-i~hF~SK~aldI~GLG~k~Ie~L~e~~~~~g~I~~~~DLy~L~~~~~~~~~~l~~l~GfgeKsa~nL~~sIe~s 545 (731)
T Consensus 84 ~~~~gi~~Yl~S---~~~KGvGk~~Aq~Iv~Tf---G-e~~~~~l-------~~~P~kL~~V~G~s~~~~~~~~~~~~~~ 149 (769)
T TIGR01448 84 TSKEGIVAYLSS---SSIKGVGKKLAQRIVETF---G-EAAIDVL-------DDDPEKLLEVSGISKANLEKIVSQLSKQ 149 (769)
T ss_pred CHHHHHHHHHHC---CCCCCCCHHHHHHHHHHH---H-HHHHHHH-------HCCCHHEEEECCCCHHHHHHHHHHHHHH
T ss_conf 506787655522---541672057789999987---6-9999887-------4086010330775667789999999975
Q ss_pred HH-HHHHHHHHHCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHC-CCCCCHHHHHHHHHHH
Q ss_conf 22-34666776301011116899999988299899999789776125117787613-8886789999999996
Q gi|254781172|r 546 RN-ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIR-VPLVGDIIAQAIVEFY 616 (731)
Q Consensus 546 K~-~~L~r~L~ALGI~~vG~~~Ak~La~~f~si~~l~~~~~~~~~~~~~~~e~L~~-I~GiG~~~A~si~~ff 616 (731)
T Consensus 150 ~~~~~~l~~L~~lG---~~~~l~~~~~k~y~eadP~~dtLd~----v~~~Py~L~~d~~GiGF~~AD~lA~~l 215 (769)
T TIGR01448 150 KDERKLLLKLQQLG---IGIKLALRIYKFYREADPQADTLDV----VEKDPYLLAEDVKGIGFKTADQLAEEL 215 (769)
T ss_pred HHHHHHHHHHHHCC---CCHHHHHHHHHHHCCCCCCCCHHHH----HHCCHHHHHHHHCCCCHHHHHHHHHHC
T ss_conf 58999999998538---7678999999984035872116888----621720136751374056899999971