HHsearch alignment for GI: 254781172 and conserved domain: TIGR01448
>TIGR01448 recD_rel helicase, RecD/TraA family; InterPro: IPR006345 These sequences represent a family similar to RecD, the exodeoxyribonuclease V alpha chain of IPR006344 from INTERPRO. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD. .
Probab=94.10 E-value=0.16 Score=30.98 Aligned_cols=67 Identities=22% Similarity=0.357 Sum_probs=38.5
Q ss_pred CHHHHHHHHHCCCCCC------CCEEEEECCCCHHHHHHHHHHHHCCCCCCCCCEEEEECCHHCCCCCCCCCCCCCC
Q ss_conf 0036899997599665------4148874032113455665531001123437637773110001115876568663
Q gi|254781172|r 254 QYEMLQKMRCLGFPVN------NGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRW 324 (731)
Q Consensus 254 ~~e~l~~L~~~GF~v~------~~~~~~~~~~~~~~~~~~~~~~r~~l~y~iDGiVikvn~~~~q~~lG~ts~~Prw 324 (731)
T Consensus 152 ~~~~l~~L~~lG~~~~l~~~~~k~y~eadP~~dtLd~v~---~~Py~L~~d~~GiGF~~AD-~lA~~lG~~~~dP~R 224 (769)
T TIGR01448 152 ERKLLLKLQQLGIGIKLALRIYKFYREADPQADTLDVVE---KDPYLLAEDVKGIGFKTAD-QLAEELGIALNDPRR 224 (769)
T ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCHHHHHH---CCHHHHHHHHCCCCHHHHH-HHHHHCCCCCCCCHH
T ss_conf 999999998538767899999998403587211688862---1720136751374056899-999971862358447