HHsearch alignment for GI: 254781172 and conserved domain: TIGR02236

>TIGR02236 recomb_radA DNA repair and recombination protein RadA; InterPro: IPR011938 This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA, eukaryotic RAD51 (IPR011941 from INTERPRO), and archaeal RadB (IPR011939 from INTERPRO). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein .; GO: 0003684 damaged DNA binding, 0005524 ATP binding, 0008094 DNA-dependent ATPase activity, 0006281 DNA repair, 0006310 DNA recombination.
Probab=95.04  E-value=0.025  Score=37.14  Aligned_cols=153  Identities=16%  Similarity=0.219  Sum_probs=85.9

Q ss_pred             CHHHHHHHHHHHHHCCCCCCEEEEEHHHHCCHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHH-HHHHHHHHHCCHH
Q ss_conf             035410355556530576540454101101067775310001000134210014568999987522-3466677630101
Q gi|254781172|r  482 NIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN-ISLERFIFSLGIR  560 (731)
Q Consensus       482 dI~GLG~k~Ie~L~e~~~~~g~I~~~~DLy~L~~~~~~~~~~l~~l~GfgeKsa~nL~~sIe~sK~-~~L~r~L~ALGI~  560 (731)
T Consensus         4 dLPGVGp~TA~KL~EaGy~-----------t~~~iA~A~~~EL~~~~gI~E~~A~kiI~A---AR~a~~~~~F~~a~~vl   69 (333)
T TIGR02236         4 DLPGVGPATAEKLREAGYD-----------TLEAIAVASPKELSEIAGIGEGTAAKIIQA---ARKAADLGGFETADDVL   69 (333)
T ss_pred             CCCCCCHHHHHHHHHHHHH-----------HHHHHHCCCHHHHHHHCCCCHHHHHHHHHH---HHHHHCCCCCHHHHHHH
T ss_conf             5789757688998861078-----------899984458579532037877789999999---99984676721489999


Q ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHCCCCCCHHHHHHHHHHHC---CHHHHHHHHHHHHHCCCC--
Q ss_conf             111689999998829989999978977612511778761388867899999999966---979999999999733877--
Q gi|254781172|r  561 HVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ---NPRNICAVEALLKEVSPS--  635 (731)
Q Consensus       561 ~vG~~~Ak~La~~f~si~~l~~~~~~~~~~~~~~~e~L~~I~GiG~~~A~si~~ff~---~~~n~~~i~~L~~~~~~~--  635 (731)
T Consensus        70 -~rR~~v~kitTgs~~LDeLL---------------------G-GGiETqaiTE~~GEFGSGK-TQ~~HqL--AVnVQlP  123 (333)
T TIGR02236        70 -ERRKSVGKITTGSKELDELL---------------------G-GGIETQAITEVFGEFGSGK-TQICHQL--AVNVQLP  123 (333)
T ss_pred             -HHHHCCCEEECCCHHHHHHC---------------------C-CCCCCEEEEEEEEEECCCH-HHHHHHH--HHHHCCC
T ss_conf             -98720750444863676560---------------------7-9600005888771007865-7876676--5532287


Q ss_pred             ---CCCCCCCCCCCCCCCEEEEECCCCCCCHHHHHHHHH--HCC
Q ss_conf             ---654322468821686699972588998789999999--829
Q gi|254781172|r  636 ---IGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVT--QLG  674 (731)
Q Consensus       636 ---~~~~~~~~~~~l~gk~vV~TGtl~~~~R~e~~~~ie--~~G  674 (731)
T Consensus       124 ~flfydeeave~GGL~gp~av~IDTEnTFRPERI~qmA~GL~~g  167 (333)
T TIGR02236       124 EFLFYDEEAVEKGGLEGPKAVYIDTENTFRPERIEQMAKGLARG  167 (333)
T ss_pred             CHHHCCCHHHCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHH
T ss_conf             11210110001477678768998559798625799999863111