HHsearch alignment for GI: 254781172 and conserved domain: TIGR02236
>TIGR02236 recomb_radA DNA repair and recombination protein RadA; InterPro: IPR011938 This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA, eukaryotic RAD51 (IPR011941 from INTERPRO), and archaeal RadB (IPR011939 from INTERPRO). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein .; GO: 0003684 damaged DNA binding, 0005524 ATP binding, 0008094 DNA-dependent ATPase activity, 0006281 DNA repair, 0006310 DNA recombination.
Probab=95.04 E-value=0.025 Score=37.14 Aligned_cols=153 Identities=16% Similarity=0.219 Sum_probs=85.9
Q ss_pred CHHHHHHHHHHHHHCCCCCCEEEEEHHHHCCHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHH-HHHHHHHHHCCHH
Q ss_conf 035410355556530576540454101101067775310001000134210014568999987522-3466677630101
Q gi|254781172|r 482 NIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN-ISLERFIFSLGIR 560 (731)
Q Consensus 482 dI~GLG~k~Ie~L~e~~~~~g~I~~~~DLy~L~~~~~~~~~~l~~l~GfgeKsa~nL~~sIe~sK~-~~L~r~L~ALGI~ 560 (731)
T Consensus 4 dLPGVGp~TA~KL~EaGy~-----------t~~~iA~A~~~EL~~~~gI~E~~A~kiI~A---AR~a~~~~~F~~a~~vl 69 (333)
T TIGR02236 4 DLPGVGPATAEKLREAGYD-----------TLEAIAVASPKELSEIAGIGEGTAAKIIQA---ARKAADLGGFETADDVL 69 (333)
T ss_pred CCCCCCHHHHHHHHHHHHH-----------HHHHHHCCCHHHHHHHCCCCHHHHHHHHHH---HHHHHCCCCCHHHHHHH
T ss_conf 5789757688998861078-----------899984458579532037877789999999---99984676721489999
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHCCCCCCHHHHHHHHHHHC---CHHHHHHHHHHHHHCCCC--
Q ss_conf 111689999998829989999978977612511778761388867899999999966---979999999999733877--
Q gi|254781172|r 561 HVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ---NPRNICAVEALLKEVSPS-- 635 (731)
Q Consensus 561 ~vG~~~Ak~La~~f~si~~l~~~~~~~~~~~~~~~e~L~~I~GiG~~~A~si~~ff~---~~~n~~~i~~L~~~~~~~-- 635 (731)
T Consensus 70 -~rR~~v~kitTgs~~LDeLL---------------------G-GGiETqaiTE~~GEFGSGK-TQ~~HqL--AVnVQlP 123 (333)
T TIGR02236 70 -ERRKSVGKITTGSKELDELL---------------------G-GGIETQAITEVFGEFGSGK-TQICHQL--AVNVQLP 123 (333)
T ss_pred -HHHHCCCEEECCCHHHHHHC---------------------C-CCCCCEEEEEEEEEECCCH-HHHHHHH--HHHHCCC
T ss_conf -98720750444863676560---------------------7-9600005888771007865-7876676--5532287
Q ss_pred ---CCCCCCCCCCCCCCCEEEEECCCCCCCHHHHHHHHH--HCC
Q ss_conf ---654322468821686699972588998789999999--829
Q gi|254781172|r 636 ---IGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVT--QLG 674 (731)
Q Consensus 636 ---~~~~~~~~~~~l~gk~vV~TGtl~~~~R~e~~~~ie--~~G 674 (731)
T Consensus 124 ~flfydeeave~GGL~gp~av~IDTEnTFRPERI~qmA~GL~~g 167 (333)
T TIGR02236 124 EFLFYDEEAVEKGGLEGPKAVYIDTENTFRPERIEQMAKGLARG 167 (333)
T ss_pred CHHHCCCHHHCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHH
T ss_conf 11210110001477678768998559798625799999863111