HHsearch alignment for GI: 254781172 and conserved domain: TIGR02236
>TIGR02236 recomb_radA DNA repair and recombination protein RadA; InterPro: IPR011938 This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA, eukaryotic RAD51 (IPR011941 from INTERPRO), and archaeal RadB (IPR011939 from INTERPRO). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein .; GO: 0003684 damaged DNA binding, 0005524 ATP binding, 0008094 DNA-dependent ATPase activity, 0006281 DNA repair, 0006310 DNA recombination.
Probab=93.52 E-value=0.039 Score=35.70 Aligned_cols=46 Identities=22% Similarity=0.264 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHCCCCCHHHHHCCCCCCHHHHHHHHH
Q ss_conf 011116899999988-29989999978977612511778761388867899999999
Q gi|254781172|r 559 IRHVGAEIARSLAKY-YLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVE 614 (731)
Q Consensus 559 I~~vG~~~Ak~La~~-f~si~~l~~~~~~~~~~~~~~~e~L~~I~GiG~~~A~si~~ 614 (731)
T Consensus 5 LPGVGp~TA~KL~EaGy~t~~~iA----------~A~~~EL~~~~gI~E~~A~kiI~ 51 (333)
T TIGR02236 5 LPGVGPATAEKLREAGYDTLEAIA----------VASPKELSEIAGIGEGTAAKIIQ 51 (333)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHH----------CCCHHHHHHHCCCCHHHHHHHHH
T ss_conf 789757688998861078899984----------45857953203787778999999