>TIGR02776 NHEJ_ligase_prk DNA ligase D; InterPro: IPR014143 Members of this entry are DNA ligases involved in the repair of DNA double-stranded breaks by non-homologous end joining (NheJ). The system of the bacterial Ku protein (IPR009187 from INTERPRO) plus this DNA ligase is seen in about 200f bacterial genomes to date and at least one archaeon (Archeoglobus fulgidus). This entry describes a central and C-terminal domain. These two domains may be permuted, as in genus Mycobacterium, or divided into tandem ORFs. An additional N-terminal 3 -phosphoesterase (PE) domain (IPR014144 from INTERPRO) is present in some members of this ligase. Most examples of genes for this ligase are adjacent to the gene for Ku..

Probab=97.59 E-value=0.0011 Score=47.58 Aligned_cols=165 Identities=20% Similarity=0.212 Sum_probs=98.1 Q ss_pred CCEEEEEEECCEEEEEEEEECCEEEEEEECCCCHHHHHHHHHHHHHCCCCCCCC-----CCCCCEEEEEEEEEEEC---- Q ss_conf 611999941581899999859989988865986556669997753102432233-----54455048999999852---- Q gi|254781172|r 125 SIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLS-----LNIPEIIEVRGEVYISK---- 195 (731) Q Consensus 125 ~~~~~vepKiDG~sisl~Y~~G~L~~a~TRGdG~~GeDVT~n~~~i~~iP~~l~-----~~~~~~ieiRGEv~m~~---- 195 (731) T Consensus 4 G~~W~yEvKyDGYR~~~~i~~g~-vrL~tR----nG~dwt~~fp~---i~~~~~~~~~~~l~~~~~~lDGEiVvL~~~g~ 75 (645) T TIGR02776 4 GDGWLYEVKYDGYRCLLRIEDGD-VRLITR----NGHDWTERFPE---IVKALAEIIEKLLKLLPAWLDGEIVVLDERGR 75 (645) T ss_pred CCCCEEEECCCCCEEEEEEECCE-EEEEEC----CCCCHHHHHHH---HHHHHHHHHHHHHHCCCEEECCEEEEECCCCC T ss_conf 88843763124223566785481-799852----88785552068---99999999986520563121335797278898 Q ss_pred HHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCHH---HHHCCCEEEEEEECCCCCC-----CCCCCHHHH-HHHHHCCC Q ss_conf 02123455643148543342345677775234555---5301110566410245433-----210000368-99997599 Q gi|254781172|r 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT---DITRYLNFFVHGLGKTSEI-----FAKGQYEML-QKMRCLGF 266 (731) Q Consensus 196 ~~F~~lN~~~~~~g~~~f~NpRN~aaG~lr~~d~~---~~~r~L~f~ay~~~~~~~~-----~~~~~~e~l-~~L~~~GF 266 (731) T Consensus 76 ~~F~~LQ~R-----------------gr~~~~~~a~~~~~~~~~~~~aFDLl~l~G~dL~~lPL~~RK~~L~~LL~~~~~ 138 (645) T TIGR02776 76 ADFAALQNR-----------------GRLKKTDRALSEGASEPLLYYAFDLLFLSGEDLRALPLEERKKRLKELLKAQDG 138 (645) T ss_pred CCHHHHHCC-----------------HHCCCHHHHHHHHCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHCCC T ss_conf 781886202-----------------001334589997218980899971566880677862489999999999984468 Q ss_pred C-----CCCCEEE--EECCCCHHHHHHHHHHHHCCCCCCCCCEEEEECCHHCCCCCCCCC-CCCCCE Q ss_conf 6-----6541488--740321134556655310011234376377731100011158765-686631 Q gi|254781172|r 267 P-----VNNGVRQ--ANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERA-RSPRWM 325 (731) Q Consensus 267 ~-----v~~~~~~--~~~~~~~~~~~~~~~~~r~~l~y~iDGiVikvn~~~~q~~lG~ts-~~Prwa 325 (731) T Consensus 139 ~~~~~~~~~~~~~r~~~~~~~~~~ll~~a~~------~~lEGvv~Kr~~s~Y~s-----gkRs~~W~ 194 (645) T TIGR02776 139 PAEPDPAIRYSDHRVFEEDGDGQALLESACR------LGLEGVVSKRLDSPYRS-----GKRSKDWL 194 (645) T ss_pred CCCCCCCCCCEECCCCCCCCHHHHHHHHHHH------HCCCEEEEECCCCCCCC-----CCCCCCHH T ss_conf 7567741200001100685158999999998------57973898547773016-----77686024

HHsearch alignment for GI: 254781172 and conserved domain: TIGR02776