HHsearch alignment for GI: 254781172 and conserved domain: cd00027
>cd00027 BRCT Breast Cancer Suppressor Protein (BRCA1), carboxy-terminal domain. The BRCT domain is found within many DNA damage repair and cell cycle checkpoint proteins. The unique diversity of this domain superfamily allows BRCT modules to interact forming homo/hetero BRCT multimers, BRCT-non-BRCT interactions, and interactions within DNA strand breaks.
Probab=98.18 E-value=1.1e-05 Score=63.02 Aligned_cols=70 Identities=37% Similarity=0.551 Sum_probs=63.0
Q ss_pred CCEEEEECCCCCCCHHHHHHHHHHCCCEEEEEEECCEEEEEECCCCCC-HHHHHHHCCCEEECHHHHHHHH
Q ss_conf 866999725889987899999998298499811163217997788886-3798997499173799999999
Q gi|254781172|r 649 NKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGS-KLEKAQQLGVKIMNEEQFLFLL 718 (731)
Q Consensus 649 gk~vV~TGtl~~~~R~e~~~~ie~~Ggkv~sSVSkkT~~LI~ge~~gS-Kl~KA~~LgI~Ii~e~ef~~ll 718 (731)
T Consensus 1 ~~~~~i~~~~~~~~~~~l~~~i~~~Gg~v~~~~~~~~thvI~~~~~~~~~~~~~~~~~~~iV~~~Wi~~~~ 71 (72)
T cd00027 1 GLTFVITGDLPSEERDELKELIEKLGGKVTSSVSKKTTHVIVGSDAGPKKLLKAIKLGIPIVTPEWLLDCL 71 (72)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHCCCEEECCCCCCCCEEEECCCCCCHHHHHHHHCCCCCCCHHHHHHHH
T ss_conf 98999950489889999999999849989581558855999868778289999997599573799999985