HHsearch alignment for GI: 254781172 and conserved domain: cd07896
>cd07896 Adenylation_kDNA_ligase_like The Adenylation domain of kDNA ligase and similar proteins, which is involved in kDNA replication or repair, is a component of the catalytic core unit. The mitochondrial DNA of parasitic protozoan is highly unusual. It is termed the kinetoplast DNA (kDNA) and consists of circular DNA molecules (maxicircles) and several thousand smaller circular molecules (minicircles). This group is composed of kDNA ligase, Chlorella virus DNA ligase, and similar proteins. kDNA ligase and Chlorella virus DNA ligase are the smallest known ATP-dependent ligases. They are involved in DNA replication or repair. ATP-dependent polynucleotide ligases catalyze phosphodiester bond formation using nicked nucleic acid substrates with the high energy nucleotide of ATP as a cofactor in a three step reaction mechanism. They have a highly modular architecture consisting of a unique arrangement of two or more discrete domains. The adenylation and the C-terminal oligouncleotide/olig
Probab=98.20 E-value=1.8e-05 Score=61.42 Aligned_cols=142 Identities=23% Similarity=0.365 Sum_probs=85.0
Q ss_pred CCCEEEEEEECCEEEEEEEEECCEEEEEEECCCCHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEEEEEEECHHHHHHHH
Q ss_conf 76119999415818999998599899888659865566699977531024322335445504899999985202123455
Q gi|254781172|r 124 NSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALND 203 (731)
Q Consensus 124 ~~~~~~vepKiDG~sisl~Y~~G~L~~a~TRGdG~~GeDVT~n~~~i~~iP~~l~~~~~~~ieiRGEv~m~~~~F~~lN~ 203 (731)
T Consensus 14 ~~~~w~~e~K~DG~R~~--~-~~~--~l~SR----~G~~~~~~-------~-~~~~~~~-~~vlDGEl~~~~~~F~~l-- 73 (174)
T cd07896 14 DISGYLVSEKLDGVRAY--W-DGK--QLLSR----SGKPIAAP-------D-WFTAGLP-PFPLDGELWIGRGQFEQL-- 73 (174)
T ss_pred CCCCEEEEEEECEEEEE--E-ECC--EEEEC----CCCCCCCH-------H-HHHHHCC-CCCEEEEEEECCCCHHHH--
T ss_conf 94043876511479999--9-889--99966----99867894-------9-9995498-851745886078987999--
Q ss_pred HHHHCCCCCCCCHHHHHHHHHHCCCHHH-HHCCCEEEEEEECCCCCCCCCCCHHHHHHHHHC----CCC---CCCCEEEE
Q ss_conf 6431485433423456777752345555-301110566410245433210000368999975----996---65414887
Q gi|254781172|r 204 EMIAVGRKPYANPRNAASGILRRLNPTD-ITRYLNFFVHGLGKTSEIFAKGQYEMLQKMRCL----GFP---VNNGVRQA 275 (731)
Q Consensus 204 ~~~~~g~~~f~NpRN~aaG~lr~~d~~~-~~r~L~f~ay~~~~~~~~~~~~~~e~l~~L~~~----GF~---v~~~~~~~ 275 (731)
T Consensus 74 -----------------~~~~~~~~~~~~~~~~l~y~vFDll~~~~-p---~~~R~~~L~~~~~~~~~~~v~~v~-~~~v 131 (174)
T cd07896 74 -----------------SSIVRRKGPDDEAWRKVKYMVFDLPSADG-P---FEERLERLKNLLEKAPNPHIKIVP-QIRV 131 (174)
T ss_pred -----------------HHHHHCCCCCHHHCCCCEEEEEECCCCCC-C---HHHHHHHHHHHHHHCCCCEEEEEC-EEEE
T ss_conf -----------------99986169883330341599987245689-9---999999999998657998099736-1880
Q ss_pred ECCCCHHHHHHHHHHHHCCCCCCCCCEEEEECCHHCCC
Q ss_conf 40321134556655310011234376377731100011
Q gi|254781172|r 276 NTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQK 313 (731)
Q Consensus 276 ~~~~~~~~~~~~~~~~r~~l~y~iDGiVikvn~~~~q~ 313 (731)
T Consensus 132 ~~~~el~~~~~~~~~~------G~EGimlK~~~s~Y~~ 163 (174)
T cd07896 132 KSNAHLDSYLDEVVAQ------GGEGLMLRRPDAPYEA 163 (174)
T ss_pred CCHHHHHHHHHHHHHC------CCCEEEEECCCCCCCC
T ss_conf 9999999999999877------9876478889995789