HHsearch alignment for GI: 254781172 and conserved domain: cd07897

>cd07897 Adenylation_DNA_ligase_Bac1 The Adenylation domain of putative bacterial ATP-dependent DNA ligases is inferred by similarity to be a component of the catalytic core unit. Bacterial DNA ligases are divided into two broad classes: NAD-dependent and ATP-dependent. All bacterial species have a NAD-dependent DNA ligase (LigA). Some bacterial genomes contain multiple genes for DNA ligases that are predicted to use ATP as their cofactor, including Mycobacterium tuberculosis LigB, LigC, and LigD. This group is composed of predicted bacterial ATP-dependent DNA ligases. ATP-dependent polynucleotide ligases catalyze phosphodiester bond formation using nicked nucleic acid substrates with the high energy nucleotide of ATP as a cofactor in a three step reaction mechanism. The adenylation and C-terminal oligouncleotide/oligosaccharide binding (OB)-fold domains comprise a catalytic core unit that is common to most members of the ATP-dependent DNA ligase family, including this group. The adenyl
Probab=98.07  E-value=0.00015  Score=54.36  Aligned_cols=154  Identities=16%  Similarity=0.122  Sum_probs=87.2

Q ss_pred             CCEEEEEEECCEEEEEEEEECCEEEEEEECCCCHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEEEEEEECH-----HHH
Q ss_conf             611999941581899999859989988865986556669997753102432233544550489999998520-----212
Q gi|254781172|r  125 SIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKN-----DFL  199 (731)
Q Consensus       125 ~~~~~vepKiDG~sisl~Y~~G~L~~a~TRGdG~~GeDVT~n~~~i~~iP~~l~~~~~~~ieiRGEv~m~~~-----~F~  199 (731)
T Consensus        23 ~~dw~~E~K~DG~R~~~~~~~~~-v~l~SR----ng~~~t~~fPei~~~~~~~----~~~~ILDGEiv~~~~~g~~~~F~   93 (208)
T cd07897          23 PSDWQAEWKWDGIRGQLVRRGGE-VFLWSR----GEELISGSFPELLAAAEAL----PDGTVLDGELLVWRDGGEPLPFN   93 (208)
T ss_pred             CCCEEEEEEECCEEEEEEEECCE-EEEEEC----CCCCCCHHCHHHHHHHHHC----CCCEEEEEEEEEECCCCCCCCHH
T ss_conf             67679995376188999997999-999948----9870210164789999848----87859985899973899845889


Q ss_pred             HHHHHHHHCCCCCCCCHHHHHHHHHHCCCHH--H-HHCCCEEEEEEECCCCCCCC--CCCHHHHHHHHHCCCCCC-CCE-
Q ss_conf             3455643148543342345677775234555--5-30111056641024543321--000036899997599665-414-
Q gi|254781172|r  200 ALNDEMIAVGRKPYANPRNAASGILRRLNPT--D-ITRYLNFFVHGLGKTSEIFA--KGQYEMLQKMRCLGFPVN-NGV-  272 (731)
Q Consensus       200 ~lN~~~~~~g~~~f~NpRN~aaG~lr~~d~~--~-~~r~L~f~ay~~~~~~~~~~--~~~~e~l~~L~~~GF~v~-~~~-  272 (731)
T Consensus        94 ~l~~r-------------------~~rk~~~~~~~~~~p~~~~vFDiL~l~g~~l~~~pl~eRk~~L~~l~~~~~~~~i~  154 (208)
T cd07897          94 DLQQR-------------------LGRKTVGKKLLADAPAAFRAYDLLELNGEDLRALPLRERRARLEALLAELPPPRLD  154 (208)
T ss_pred             HHHHH-------------------HCCCCCCHHHHHCCCEEEEEEEEEEECCCCCCCCCHHHHHHHHHHHHHCCCCCEEE
T ss_conf             99977-------------------53357426677318759999875303797201187999999999987315898299


Q ss_pred             ----EEEECCCCHHHHHHHHHHHHCCCCCCCCCEEEEECCHHCC
Q ss_conf             ----8874032113455665531001123437637773110001
Q gi|254781172|r  273 ----RQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQ  312 (731)
Q Consensus       273 ----~~~~~~~~~~~~~~~~~~~r~~l~y~iDGiVikvn~~~~q  312 (731)
T Consensus       155 ~s~~~~~~~~~~~~~l~~~a------~~~G~EGIm~K~~dS~Y~  192 (208)
T cd07897         155 LSPLVPFSSWEELAALRAES------RERGVEGLMLKRRDSPYL  192 (208)
T ss_pred             EECEEECCCHHHHHHHHHHH------HHCCCCEEEECCCCCCCC
T ss_conf             81407369999999999999------876995299728999668