HHsearch alignment for GI: 254781172 and conserved domain: cd07905
>cd07905 Adenylation_DNA_ligase_LigC The Adenylation domain of Mycobacterium tuberculosis LigC-like ATP-dependent DNA ligases is a component of the catalytic core unit. Bacterial DNA ligases are divided into two broad classes: NAD-dependent and ATP-dependent. All bacterial species have a NAD-dependent DNA ligase (LigA). Some bacterial genomes contain multiple genes for DNA ligases that are predicted to use ATP as their cofactor, including Mycobacterium tuberculosis LigB, LigC, and LigD. This group is composed of ATP-dependent DNA ligases similar to Mycobacterium tuberculosis LigC. ATP-dependent polynucleotide ligases catalyze phosphodiester bond formation using nicked nucleic acid substrates with the high energy nucleotide of ATP as a cofactor in a three step reaction mechanism. DNA ligases play a vital role in the diverse processes of DNA replication, recombination and repair. Members of this group contain adenylation and C-terminal oligouncleotide/oligosaccharide binding (OB)-fold dom
Probab=97.90 E-value=0.00041 Score=50.95 Aligned_cols=160 Identities=18% Similarity=0.155 Sum_probs=85.1
Q ss_pred CCCEEEEEEECCEEEEEEEEECCEEEEEEECCCCHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEEEEEEEC---HHHHH
Q ss_conf 761199994158189999985998998886598655666999775310243223354455048999999852---02123
Q gi|254781172|r 124 NSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISK---NDFLA 200 (731)
Q Consensus 124 ~~~~~~vepKiDG~sisl~Y~~G~L~~a~TRGdG~~GeDVT~n~~~i~~iP~~l~~~~~~~ieiRGEv~m~~---~~F~~ 200 (731)
T Consensus 14 ~~~~w~~E~K~DG~R~~~h~~~~~-v~l~SR----~g~~~t~~fpei~~~---~~~~~~~~~ILDGElv~~~~~~~~F~~ 85 (194)
T cd07905 14 LGGGWLYEPKWDGFRCLVFRDGDE-VELQSR----SGKPLTRYFPELVAA---ARALLPERCVLDGELVVWRGGRLDFDA 85 (194)
T ss_pred CCCCEEEEEEECCEEEEEEEECCE-EEEEEC----CCCHHHHHCHHHHHH---HHHHCCCCEEEEEEEEEECCCCCCHHH
T ss_conf 999669998177299999998999-999949----998234557699999---987388656997479984599889899
Q ss_pred HHHHHHHCCCCCCCCHHHHHHHHHHCCCHHHHHCCCEEEEEEECCCCCCC--CCCCHHHHHHHHHCCCCCCCCEEEE---
Q ss_conf 45564314854334234567777523455553011105664102454332--1000036899997599665414887---
Q gi|254781172|r 201 LNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIF--AKGQYEMLQKMRCLGFPVNNGVRQA--- 275 (731)
Q Consensus 201 lN~~~~~~g~~~f~NpRN~aaG~lr~~d~~~~~r~L~f~ay~~~~~~~~~--~~~~~e~l~~L~~~GF~v~~~~~~~--- 275 (731)
T Consensus 86 l~~r~~---------~~--~~----~~~~~~~~~p~~~~vFDiL~l~g~~l~~~pl~eRr~~L~~~~~~~~~~~~~~~~~ 150 (194)
T cd07905 86 LQQRIH---------PA--AS----RVRKLAEETPASFVAFDLLALGGVDLRGRPLRERRARLEELLAGWGPPLQLSPAT 150 (194)
T ss_pred HHHHHH---------HC--CC----CHHHHHHCCCEEEEEEEEEEECCCCCCCCCHHHHHHHHHHHHCCCCCCEEEEEEE
T ss_conf 998865---------13--43----0556542288079998888889715223889999999999862589958997443
Q ss_pred ECCCCHHHHHHHHHHHHCCCCCCCCCEEEEECCHHCC
Q ss_conf 4032113455665531001123437637773110001
Q gi|254781172|r 276 NTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQ 312 (731)
Q Consensus 276 ~~~~~~~~~~~~~~~~r~~l~y~iDGiVikvn~~~~q 312 (731)
T Consensus 151 ~~~~~~~~~~~~a~~------~g~EGiv~K~~dS~Y~ 181 (194)
T cd07905 151 TDPAEAEEWLEAFEG------AGLDGVVAKRLDGRYR 181 (194)
T ss_pred CCHHHHHHHHHHHHH------CCCCEEEECCCCCCCC
T ss_conf 898999999999987------7995699718999718