HHsearch alignment for GI: 254781172 and conserved domain: cd07907
>cd07907 Adenylation_DNA_ligase_Bac2 The Adenylation domain of putative bacterial ATP-dependent DNA ligases is inferred by similarity to be a component of the catalytic core unit. Bacterial DNA ligases are divided into two broad classes: NAD-dependent and ATP-dependent. All bacterial species have a NAD-dependent DNA ligase (LigA). Some bacterial genomes contain multiple genes for DNA ligases that are predicted to use ATP as their cofactor, including Mycobacterium tuberculosis LigB, LigC, and LigD. This group is composed of predicted bacterial ATP-dependent DNA ligases. ATP-dependent polynucleotide ligases catalyze phosphodiester bond formation using nicked nucleic acid substrates with the high energy nucleotide of ATP as a cofactor in a three step reaction mechanism. The adenylation and C-terminal oligouncleotide/oligosaccharide binding (OB)-fold domains comprise a catalytic core unit that is common to most members of the ATP-dependent DNA ligase family, including this group. The adenyl
Probab=98.23 E-value=0.00013 Score=54.82 Aligned_cols=153 Identities=20% Similarity=0.154 Sum_probs=87.0
Q ss_pred CCCEEEEEEECCEEEEEEEEECCEEEEEEECCCCHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEEEEEEECH----HHH
Q ss_conf 7611999941581899999859989988865986556669997753102432233544550489999998520----212
Q gi|254781172|r 124 NSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKN----DFL 199 (731)
Q Consensus 124 ~~~~~~vepKiDG~sisl~Y~~G~L~~a~TRGdG~~GeDVT~n~~~i~~iP~~l~~~~~~~ieiRGEv~m~~~----~F~ 199 (731)
T Consensus 31 ~~~~~~~E~K~DG~R~qih~~~~~-v~l~SR----ng~d~T~~fPel~~~~~----~l~~~~ILDGEiv~~~~~~~~~F~ 101 (213)
T cd07907 31 APPAAWLEDKYDGIRAQLHKSEGR-VELYSR----DLEDITEQFPELADAAR----ALPHEFILDGEILAWRYGRALPFS 101 (213)
T ss_pred CCCCCEEEECCCCEEEEEEEECCE-EEEEEC----CCCCCHHHHHHHHHHHH----HCCCCEEEEEEEEEECCCCCCCHH
T ss_conf 999887996438078999998999-999918----98704335578999998----279985998078997389879889
Q ss_pred HHHHHHHHCCCCCCCCHHHHHHHHHHCCCHH-H--HHCCCEEEEEEECCCCCCCC--CCCHHHHHHHHHCCCCCCCCE--
Q ss_conf 3455643148543342345677775234555-5--30111056641024543321--000036899997599665414--
Q gi|254781172|r 200 ALNDEMIAVGRKPYANPRNAASGILRRLNPT-D--ITRYLNFFVHGLGKTSEIFA--KGQYEMLQKMRCLGFPVNNGV-- 272 (731)
Q Consensus 200 ~lN~~~~~~g~~~f~NpRN~aaG~lr~~d~~-~--~~r~L~f~ay~~~~~~~~~~--~~~~e~l~~L~~~GF~v~~~~-- 272 (731)
T Consensus 102 ~lq~-------------------r~~~k~~~~~~~~~~pv~~~~FDiL~lng~~L~~~pl~eRr~~L~~l~~~~-~~~~l 161 (213)
T cd07907 102 ELQK-------------------RLGRKAEDDFMQEEIPVVYVAFDLLWLNGELLLDRPLEERRQKLESLLSPP-PKLRL 161 (213)
T ss_pred HHHH-------------------HHHCCCCCHHHHHHCCEEEEEEEEEEECCCCHHHCCHHHHHHHHHHHCCCC-CCEEE
T ss_conf 9998-------------------752046416667317838999764116871732189999999999733788-87596
Q ss_pred ---EEEECCCCHHHHHHHHHHHHCCCCCCCCCEEEEECCHHC
Q ss_conf ---887403211345566553100112343763777311000
Q gi|254781172|r 273 ---RQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311 (731)
Q Consensus 273 ---~~~~~~~~~~~~~~~~~~~r~~l~y~iDGiVikvn~~~~ 311 (731)
T Consensus 162 ~~~~~~~~~~~~~~~~~~a------~~~g~EGIv~K~~dS~Y 197 (213)
T cd07907 162 APATQASSAEQIEAAFAAA------RERGNEGLMIKDPASPY 197 (213)
T ss_pred CCEEECCCHHHHHHHHHHH------HHCCCCEEEECCCCCCC
T ss_conf 3448579999999999999------97699559972799987