HHsearch alignment for GI: 254781172 and conserved domain: cd07907

>cd07907 Adenylation_DNA_ligase_Bac2 The Adenylation domain of putative bacterial ATP-dependent DNA ligases is inferred by similarity to be a component of the catalytic core unit. Bacterial DNA ligases are divided into two broad classes: NAD-dependent and ATP-dependent. All bacterial species have a NAD-dependent DNA ligase (LigA). Some bacterial genomes contain multiple genes for DNA ligases that are predicted to use ATP as their cofactor, including Mycobacterium tuberculosis LigB, LigC, and LigD. This group is composed of predicted bacterial ATP-dependent DNA ligases. ATP-dependent polynucleotide ligases catalyze phosphodiester bond formation using nicked nucleic acid substrates with the high energy nucleotide of ATP as a cofactor in a three step reaction mechanism. The adenylation and C-terminal oligouncleotide/oligosaccharide binding (OB)-fold domains comprise a catalytic core unit that is common to most members of the ATP-dependent DNA ligase family, including this group. The adenyl
Probab=98.23  E-value=0.00013  Score=54.82  Aligned_cols=153  Identities=20%  Similarity=0.154  Sum_probs=87.0

Q ss_pred             CCCEEEEEEECCEEEEEEEEECCEEEEEEECCCCHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEEEEEEECH----HHH
Q ss_conf             7611999941581899999859989988865986556669997753102432233544550489999998520----212
Q gi|254781172|r  124 NSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKN----DFL  199 (731)
Q Consensus       124 ~~~~~~vepKiDG~sisl~Y~~G~L~~a~TRGdG~~GeDVT~n~~~i~~iP~~l~~~~~~~ieiRGEv~m~~~----~F~  199 (731)
T Consensus        31 ~~~~~~~E~K~DG~R~qih~~~~~-v~l~SR----ng~d~T~~fPel~~~~~----~l~~~~ILDGEiv~~~~~~~~~F~  101 (213)
T cd07907          31 APPAAWLEDKYDGIRAQLHKSEGR-VELYSR----DLEDITEQFPELADAAR----ALPHEFILDGEILAWRYGRALPFS  101 (213)
T ss_pred             CCCCCEEEECCCCEEEEEEEECCE-EEEEEC----CCCCCHHHHHHHHHHHH----HCCCCEEEEEEEEEECCCCCCCHH
T ss_conf             999887996438078999998999-999918----98704335578999998----279985998078997389879889


Q ss_pred             HHHHHHHHCCCCCCCCHHHHHHHHHHCCCHH-H--HHCCCEEEEEEECCCCCCCC--CCCHHHHHHHHHCCCCCCCCE--
Q ss_conf             3455643148543342345677775234555-5--30111056641024543321--000036899997599665414--
Q gi|254781172|r  200 ALNDEMIAVGRKPYANPRNAASGILRRLNPT-D--ITRYLNFFVHGLGKTSEIFA--KGQYEMLQKMRCLGFPVNNGV--  272 (731)
Q Consensus       200 ~lN~~~~~~g~~~f~NpRN~aaG~lr~~d~~-~--~~r~L~f~ay~~~~~~~~~~--~~~~e~l~~L~~~GF~v~~~~--  272 (731)
T Consensus       102 ~lq~-------------------r~~~k~~~~~~~~~~pv~~~~FDiL~lng~~L~~~pl~eRr~~L~~l~~~~-~~~~l  161 (213)
T cd07907         102 ELQK-------------------RLGRKAEDDFMQEEIPVVYVAFDLLWLNGELLLDRPLEERRQKLESLLSPP-PKLRL  161 (213)
T ss_pred             HHHH-------------------HHHCCCCCHHHHHHCCEEEEEEEEEEECCCCHHHCCHHHHHHHHHHHCCCC-CCEEE
T ss_conf             9998-------------------752046416667317838999764116871732189999999999733788-87596


Q ss_pred             ---EEEECCCCHHHHHHHHHHHHCCCCCCCCCEEEEECCHHC
Q ss_conf             ---887403211345566553100112343763777311000
Q gi|254781172|r  273 ---RQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL  311 (731)
Q Consensus       273 ---~~~~~~~~~~~~~~~~~~~r~~l~y~iDGiVikvn~~~~  311 (731)
T Consensus       162 ~~~~~~~~~~~~~~~~~~a------~~~g~EGIv~K~~dS~Y  197 (213)
T cd07907         162 APATQASSAEQIEAAFAAA------RERGNEGLMIKDPASPY  197 (213)
T ss_pred             CCEEECCCHHHHHHHHHHH------HHCCCCEEEECCCCCCC
T ss_conf             3448579999999999999------97699559972799987