HHsearch alignment for GI: 254781172 and conserved domain: cd08039
>cd08039 Adenylation_DNA_ligase_Fungal The Adenylation domain of uncharacterized fungal ATP-dependent DNA ligase-like proteins is inferred by similarity to be a component of the catalytic core unit. ATP-dependent polynucleotide ligases catalyze phosphodiester bond formation using nicked nucleic acid substrates with the high energy nucleotide of ATP as a cofactor in a three step reaction mechanism. DNA ligases play a vital role in the diverse processes of DNA replication, recombination and repair. ATP-dependent ligases are present in many organisms such as viruses, bacteriophages, eukarya, archaea and bacteria. This group is composed of uncharacterized fungal proteins with similarity to ATP-dependent DNA ligases. ATP dependent DNA ligases have a highly modular architecture consisting of a unique arrangement of two or more discrete domains including a DNA-binding domain, an adenylation (nucleotidyltransferase (NTase)) domain, and an oligonucleotide/oligosaccharide binding (OB)-fold domain
Probab=97.28 E-value=0.024 Score=37.32 Aligned_cols=163 Identities=18% Similarity=0.185 Sum_probs=84.9
Q ss_pred CCEEEEEEECCEEEEEEEE---ECCEEEEEEECCCCHHHHHHHHHHH----HHCCCCCC--CCCCCCCEEEEEEEEEEEC
Q ss_conf 6119999415818999998---5998998886598655666999775----31024322--3354455048999999852
Q gi|254781172|r 125 SIFFTLEPKIDGTMITIRY---EKGKFVYAALRGDGHSGEDVSACIR----AIPTIPRV--LSLNIPEIIEVRGEVYISK 195 (731)
Q Consensus 125 ~~~~~vepKiDG~sisl~Y---~~G~L~~a~TRGdG~~GeDVT~n~~----~i~~iP~~--l~~~~~~~ieiRGEv~m~~ 195 (731)
T Consensus 21 ~~~f~~E~KyDGeR~QiH~~~~k~~~~irifSR----n~ed~T~~~p~~~~~i~~~l~~~~~~~~~~~~~ILDGE~va~d 96 (235)
T cd08039 21 RRRMSAERKYDGEYCQIHVDLSKGPNPIRIFSK----SGKDSTADRHGIHDVIRKSLRIGKPDCKFKKNCILEGEMLVWN 96 (235)
T ss_pred CCEEEEEEEECEEEEEEEECCCCCCCEEEEECC----CCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCEEEEEEEEEEE
T ss_conf 984999980380359999721478999999889----8641545432267999986411566544652079971589986
Q ss_pred H------HHHHHHHHHHHCCCCCCCCHHHHHHHHHH-CC-C-HHHHHCCCEEEEEEECCCCCC--CCCCCHHHHHHHHHC
Q ss_conf 0------21234556431485433423456777752-34-5-555301110566410245433--210000368999975
Q gi|254781172|r 196 N------DFLALNDEMIAVGRKPYANPRNAASGILR-RL-N-PTDITRYLNFFVHGLGKTSEI--FAKGQYEMLQKMRCL 264 (731)
Q Consensus 196 ~------~F~~lN~~~~~~g~~~f~NpRN~aaG~lr-~~-d-~~~~~r~L~f~ay~~~~~~~~--~~~~~~e~l~~L~~~ 264 (731)
T Consensus 97 ~~~~~~lpFq~l~~~~~r-------------~~~~~~~~~~~~~~~~~~~~~~~FDiLylnG~~L~~~Pl~eRR~~Le~l 163 (235)
T cd08039 97 DRKSDILPFHKLRKHISR-------------SGSFIGTDNDSPPHPYEHLMIVFFDVLLLDDDSLLSKPYRERRDLLESL 163 (235)
T ss_pred CCCCCCCCHHHHHHHHHC-------------CCCHHHHHHCCCCCCCCEEEEEEEEEEEECCHHHHCCCHHHHHHHHHHH
T ss_conf 788960777888767520-------------3210222212644464127999988998988534308799999999986
Q ss_pred CCCCCCC-EEEE----------ECCCCHHHHHHHHHHHHCCCCCCCCCEEEEECCHHC
Q ss_conf 9966541-4887----------403211345566553100112343763777311000
Q gi|254781172|r 265 GFPVNNG-VRQA----------NTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311 (731)
Q Consensus 265 GF~v~~~-~~~~----------~~~~~~~~~~~~~~~~r~~l~y~iDGiVikvn~~~~ 311 (731)
T Consensus 164 -~~~~~g~~~~~~~~~i~~~~~~~~~~i~~~~~~a------i~~~~EGlmiK~~~S~Y 214 (235)
T cd08039 164 -VSPIPGRAILAEQFPIDFSHPDAYSRLRTIFARA------IAEHQEGLVLKASEEPY 214 (235)
T ss_pred -HCCCCCEEEEEEEEEECCCCCCCHHHHHHHHHHH------HHCCCCEEEECCCCCCC
T ss_conf -2657881788888742367778899999999999------98699879972699977