HHsearch alignment for GI: 254781172 and conserved domain: pfam01068
>pfam01068 DNA_ligase_A_M ATP dependent DNA ligase domain. This domain belongs to a more diverse superfamily, including pfam01331 and pfam01653.
Probab=98.25 E-value=3e-05 Score=59.80 Aligned_cols=155 Identities=17% Similarity=0.146 Sum_probs=89.0
Q ss_pred CCCEEEEEEECCEEEEEEEEECCEEEEEEECCCCHHHHHHHHHHHHHCC-CCCCCCCCCCCEEEEEEEEEEECHHHHHHH
Q ss_conf 7611999941581899999859989988865986556669997753102-432233544550489999998520212345
Q gi|254781172|r 124 NSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPT-IPRVLSLNIPEIIEVRGEVYISKNDFLALN 202 (731)
Q Consensus 124 ~~~~~~vepKiDG~sisl~Y~~G~L~~a~TRGdG~~GeDVT~n~~~i~~-iP~~l~~~~~~~ieiRGEv~m~~~~F~~lN 202 (731)
T Consensus 16 ~~~~~~~E~K~DG~R~~i~~~~~~-v~~~SR----~gk~~t~~~p~l~~~~~~~~~~~-~~~~iLDGElv~~~~~~~--- 86 (190)
T pfam01068 16 GGGAFIVEEKYDGERVQIHKDGGE-VKLLSR----NGKPITATYPELLEFLLEAFFPD-VKSFILDGEIVAIPETGR--- 86 (190)
T ss_pred CCCCEEEEEEECEEEEEEEEECCE-EEEECC----CCCCCCCCCHHHHHHHHHHHCCC-CCCEEEEEEEEEECCCCC---
T ss_conf 799689999886099999998999-999929----99886101689999998763467-875799868998768998---
Q ss_pred HHHHHCCCCCCCCHHHHHHHHHHCCCHHHHHCCCEEEEEEECCCCCC--CCCCCHHHHHHHHHCCCCCCCCE-----EEE
Q ss_conf 56431485433423456777752345555301110566410245433--21000036899997599665414-----887
Q gi|254781172|r 203 DEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEI--FAKGQYEMLQKMRCLGFPVNNGV-----RQA 275 (731)
Q Consensus 203 ~~~~~~g~~~f~NpRN~aaG~lr~~d~~~~~r~L~f~ay~~~~~~~~--~~~~~~e~l~~L~~~GF~v~~~~-----~~~ 275 (731)
T Consensus 87 -----------~~~~~~~~---~~~----~~~~~~~~vFDil~~~~~~l~~~p~~~R~~~L~~~~~~-~~~i~~~~~~~~ 147 (190)
T pfam01068 87 -----------ILPFQTLA---VRK----KKEPLCFFVFDVLYLDGESLTDKPLKERRELLEEYFKI-PVRIEIAETIET 147 (190)
T ss_pred -----------CCCHHHHH---HHC----CCCCEEEEEEEEEEECCCCHHCCCHHHHHHHHHHHHCC-CCCEEEEEEEEC
T ss_conf -----------36167765---222----35772899998767887532108899999999986076-883599899862
Q ss_pred ECCCCHHHHHHHHHHHHCCCCCCCCCEEEEECCHHCC
Q ss_conf 4032113455665531001123437637773110001
Q gi|254781172|r 276 NTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQ 312 (731)
Q Consensus 276 ~~~~~~~~~~~~~~~~r~~l~y~iDGiVikvn~~~~q 312 (731)
T Consensus 148 ~~~~~~~~~~~~~~~~------G~EGim~K~~~s~Y~ 178 (190)
T pfam01068 148 NDIEELAEFLEEAIKE------GLEGVVVKDPDSRYE 178 (190)
T ss_pred CCHHHHHHHHHHHHHC------CCCEEEEECCCCCCC
T ss_conf 9999999999999878------997899968999646