HHsearch alignment for GI: 254781172 and conserved domain: pfam03120
>pfam03120 DNA_ligase_OB NAD-dependent DNA ligase OB-fold domain. DNA ligases catalyse the crucial step of joining the breaks in duplex DNA during DNA replication, repair and recombination, utilising either ATP or NAD(+) as a cofactor. This family is a small domain found after the adenylation domain pfam01653 in NAD dependent ligases. OB-fold domains generally are involved in nucleic acid binding.
Probab=99.91 E-value=1.3e-24 Score=209.54 Aligned_cols=82 Identities=55% Similarity=0.973 Sum_probs=78.7
Q ss_pred EEEEEEEEEEEECCCCEEEEEEEEEEEEECCCEEEEECCCCHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECCCCHHHHH
Q ss_conf 58998788994035622589999743330264000101489899975023454322246844076899983587025665
Q gi|254781172|r 335 ASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVV 414 (731)
Q Consensus 335 ~~T~v~~I~wqvgRtG~itPva~~ePV~l~G~~V~ratlhN~~~I~~l~~~~~~~~~~~~I~iGd~V~I~RaGdVIP~I~ 414 (731)
T Consensus 1 A~T~v~~I~~~vgRtG~itPva~~ePV~l~G~~V~~atlhN~~~i~~~-----------~i~~Gd~V~I~raGdVIP~I~ 69 (82)
T pfam03120 1 AVTKLLDIEVQVGRTGVITPVAILEPVELAGTTVSRATLHNEDEIEEK-----------DIRIGDTVVVRKAGDVIPKIV 69 (82)
T ss_pred CEEEEEEEEEECCCCEEEEEEEEEEEEEECCEEEEEEECCCHHHHHHC-----------CCCCCCEEEEEECCCCCCCEE
T ss_conf 958999999955887088699999989989999999975798998645-----------999899999999788766673
Q ss_pred HHCCCCCCCCCCE
Q ss_conf 4101235787304
Q gi|254781172|r 415 DIIVNERHPDAQP 427 (731)
Q Consensus 415 ~Vi~~~r~~~~~~ 427 (731)
T Consensus 70 ~Vi~~~R~~~~~p 82 (82)
T pfam03120 70 GVVLEKRPGDTRP 82 (82)
T ss_pred EEEHHHCCCCCCC
T ss_conf 8786238998999