HHsearch alignment for GI: 254781172 and conserved domain: pfam09414
>pfam09414 RNA_ligase RNA ligase. This is a family of RNA ligases. The enzyme repairs RNA strand breaks in nicked DNA:RNA and RNA:RNA but not in DNA:DNA duplexes.
Probab=97.24 E-value=0.01 Score=40.18 Aligned_cols=150 Identities=19% Similarity=0.168 Sum_probs=81.3
Q ss_pred EEEEEEECCEEEEEEEEECCE-EEEEEECCCCHHHH----------HHHHHHHHHCCCCCCCCCCCCCEEEEEEEEEEEC
Q ss_conf 199994158189999985998-99888659865566----------6999775310243223354455048999999852
Q gi|254781172|r 127 FFTLEPKIDGTMITIRYEKGK-FVYAALRGDGHSGE----------DVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISK 195 (731)
Q Consensus 127 ~~~vepKiDG~sisl~Y~~G~-L~~a~TRGdG~~Ge----------DVT~n~~~i~~iP~~l~~~~~~~ieiRGEv~m~~ 195 (731)
T Consensus 2 e~vvTEKLhGtn~~~~~~~~~~~~~~r~~~~g~~~~~~~~~~~~~n~~~~~~~~~-~~~~~~~~~~~~~v~i~GEl~Gp~ 80 (183)
T pfam09414 2 EWVATEKLHGTNFSVYIVRDESQFAKRKRLVGVPAEDFFGYEILDNIYWAAIEAL-QILLRLAYLIPESVAVYGELFGPG 80 (183)
T ss_pred CEEEEEEECCEEEEEEEECCCCEEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHH-HHHHHHHCCCCCEEEEEEEEECCC
T ss_conf 2899983747658999989821588732001345556310323115899999971-278775303875189998883475
Q ss_pred HHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCHHHHHCCCEEEEEEECCCCC--CCCCCCHHHHHHHHHCCCCCCCCEE
Q ss_conf 02123455643148543342345677775234555530111056641024543--3210000368999975996654148
Q gi|254781172|r 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSE--IFAKGQYEMLQKMRCLGFPVNNGVR 273 (731)
Q Consensus 196 ~~F~~lN~~~~~~g~~~f~NpRN~aaG~lr~~d~~~~~r~L~f~ay~~~~~~~--~~~~~~~e~l~~L~~~GF~v~~~~~ 273 (731)
T Consensus 81 -----------------------------IQ~~~y-~~~~~~fy~Fdi~~~~~~~~~~l~~d~~~~~~~~lgl~~vP~L~ 130 (183)
T pfam09414 81 -----------------------------IQKNTY-YQGDLHFYVFDIWYIDAQETRFLDDDEVEAFCKTLGLKTVPVLG 130 (183)
T ss_pred -----------------------------CCCCCC-CCCCCEEEEEEEEECCCCCEEECCHHHHHHHHHHCCCCCCCEEE
T ss_conf -----------------------------357632-58876599999998169916978889999999876998178895
Q ss_pred EEECCCCHHHHHHHHHHH----HCCCCCCCCCEEEEECC
Q ss_conf 874032113455665531----00112343763777311
Q gi|254781172|r 274 QANTFHGIVSYYNEMKSI----RSTLPYDIDGLVYKVDE 308 (731)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~----r~~l~y~iDGiVikvn~ 308 (731)
T Consensus 131 -rG~~~e~~~~~~~~~~~~~~~~~~~~~i~EGvVikp~~ 168 (183)
T pfam09414 131 -RGPFDELKAFDVELEMLAGALLGLEGNLAEGVVLKPVR 168 (183)
T ss_pred -EECHHHHHCCCHHCCCCCCCCCCCCCCEEEEEEEEECC
T ss_conf -98079952040112544577788888566369971144