HHsearch alignment for GI: 254781172 and conserved domain: smart00475
>smart00475 53EXOc 5'-3' exonuclease.
Probab=93.54 E-value=0.11 Score=32.12 Aligned_cols=42 Identities=17% Similarity=0.353 Sum_probs=30.7
Q ss_pred CCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHCCCCCCHHHHHHHHHH
Q ss_conf 01011116899999988299899999789776125117787613888678999999999
Q gi|254781172|r 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEF 615 (731)
Q Consensus 557 LGI~~vG~~~Ak~La~~f~si~~l~~~~~~~~~~~~~~~e~L~~I~GiG~~~A~si~~f 615 (731)
T Consensus 189 pGV~GIG~KtA~kLL~~ygsle~i~~~~d~-----------------i~~k~~~~l~~~ 230 (259)
T smart00475 189 PGVPGIGEKTAAKLLKEFGSLENILENLDK-----------------LKKKLREKLLAH 230 (259)
T ss_pred CCCCCCCHHHHHHHHHHCCCHHHHHHHHHH-----------------CCHHHHHHHHHH
T ss_conf 999984789999999983999999983985-----------------488999999977