HHsearch results for GI: 254781172 and protein with PDBid: 1b04_A
>1b04_A Protein (DNA ligase); DNA replication; 2.80A {Geobacillus stearothermophilus} SCOP: d.142.2.2
Probab=100.00 E-value=0 Score=672.43 Aligned_cols=317 Identities=36% Similarity=0.632 Sum_probs=301.6
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCHHHCCCCCCCCCCCCCCCCCCCCCEEEC
Q ss_conf 89999999999999999999984331779820878999999999999897720311589999620036432357750451
Q gi|254781172|r 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTH 91 (731)
Q Consensus 12 ~s~~~~~~~i~~L~~~i~~~~~~Yy~~~~p~isD~eYD~L~~~L~~le~~~p~~~~~~~p~spt~~Vg~~~~~~~~kv~H 91 (731)
|+.++++++|++|+++|++||++||+.|+|+|||++||+|+++|+.||++||++. .++|||++||+.+...+.|++|
T Consensus 1 m~~~~~~~~i~~L~~~i~~~~~~YY~~~~p~IsD~eYD~L~~~L~~le~~~p~l~---~~~sp~~~v~~~~~~~~~k~~h 77 (318)
T 1b04_A 1 MDRQQAERRAAELRELLNRYGYEYYVLDRPSVPDAEYDRLMQELIAIEEQYPELK---TSDSPTQRIGGPPLEAFRKVAH 77 (318)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHTTCSCCSSCHHHHHHHHHHHHHHHHCGGGC---CTTCGGGGTCCCCCSCCCEECC
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCCCC---CCCCCCCCCCCCCCCCCCCCCC
T ss_conf 9879999999999999999999986389997988999999999999998681336---8999865558754333433434
Q ss_pred CCCCCCHHHCCCHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCEEEEEEEEECCEEEEEEECCCCHHHHHHHHHHHHHC
Q ss_conf 66425702159999999999999986124677761199994158189999985998998886598655666999775310
Q gi|254781172|r 92 SIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIP 171 (731)
Q Consensus 92 ~~pMlSL~k~~~~~el~~w~~~~~~~~~~~~~~~~~~~vepKiDG~sisl~Y~~G~L~~a~TRGdG~~GeDVT~n~~~i~ 171 (731)
+.|||||+|+++.+|+..|.+++.... ....|+|||||||+|++|+|++|+|++|+|||||.+|||||+|+++|+
T Consensus 78 ~~pmlSl~~~~~~~e~~~~~~~~~~~~-----~~~~~vve~KlDG~s~~l~Y~~G~l~~a~TRGdG~~GeDiT~~~~~i~ 152 (318)
T 1b04_A 78 RVPMMSLANAFGEGDLRDFDRRVRQEV-----GEAAYVCELAIDGLAVSVRYEDGYFVQGATRGDGTTGEDITENLKTIR 152 (318)
T ss_dssp SSCCCCCCEECSTTHHHHHHHHHHHHH-----SSCCEEEEEEESSEEEEEEEETTEEEEEEECTTSSCEEBCHHHHHTCT
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHCCC-----CCCEEEEEEEEEEEEEEEEECCCEEEEEEECCCCCCCEEEECCCCCCC
T ss_conf 544442223354755313555432026-----784389977763047888851986899895588751103100332036
Q ss_pred CCCCCCCCCCCCEEEEEEEEEEECHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCHHHH-HCCCEEEEEEECCCCCCC
Q ss_conf 2432233544550489999998520212345564314854334234567777523455553-011105664102454332
Q gi|254781172|r 172 TIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLGKTSEIF 250 (731)
Q Consensus 172 ~iP~~l~~~~~~~ieiRGEv~m~~~~F~~lN~~~~~~g~~~f~NpRN~aaG~lr~~d~~~~-~r~L~f~ay~~~~~~~~~ 250 (731)
+||+.+. .|..++||||+||++++|+++|+.+.+.++++|+||||+|||+||+|+|... .|.+.|++|+++......
T Consensus 153 ~ip~~~~--~~~~~~irGEv~~~~~~f~~~~~~~~~~~~~~f~NpRN~aaG~l~~k~~~~~~~~~l~~~~~~~~~~~~~~ 230 (318)
T 1b04_A 153 SLPLRLK--EPVSLEARGEAFMPKASFLRLNEERKARGEELFANPRNAAAGSLRQLDPKVAASRQLDLFVYGLADAEALG 230 (318)
T ss_dssp TSCSBCS--SCCCEEEEEEEECCHHHHHHHHHHHHHC--CCCSCHHHHHHHHHHSSCHHHHHHTCCEEEEEEETTTTTTT
T ss_pred CCCCCCC--CCCCCCCCCCEEEEHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCHHHHHHHHCEEEEEEEECCCCC
T ss_conf 8875578--98431234655641135778778999723776566478875555502303666532014799986112468
Q ss_pred CCCCHHHHHHHHHCCCCCCCCEEEEECCCCHHHHHHHHHHHHCCCCCCCCCEEEEECCHHCCCCCCCCCCCCCCEEEECC
Q ss_conf 10000368999975996654148874032113455665531001123437637773110001115876568663123114
Q gi|254781172|r 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKF 330 (731)
Q Consensus 251 ~~~~~e~l~~L~~~GF~v~~~~~~~~~~~~~~~~~~~~~~~r~~l~y~iDGiVikvn~~~~q~~lG~ts~~PrwaiA~Kf 330 (731)
..+|++.|++|+.|||+++++...+.+.+++.+++++|.+.|..++|+|||||||+||+.+|+.||+|+|+|||||||||
T Consensus 231 ~~~~~e~l~~L~~~gf~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~y~iDGiVvkvn~~~~~~~lG~t~~~PrwaiA~Kf 310 (318)
T 1b04_A 231 IASHSEALDYLQALGFKVNPERRRCANIDEVIAFVSEWHDKRPQLPYEIDGIVIKVDSFAQQRALGATAKSPRWAIAYKF 310 (318)
T ss_dssp CCBHHHHHHHHHHTTCCCCTTCEEESSHHHHHHHHHHHHHHSTTCSSCEEEEEEEECBHHHHHHHCCCSSSCTTEEEEEC
T ss_pred CCCHHHHHHHHHHCCCCCCCCEEEECCHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCHHHHHHCCCCCCCCCCEEEECC
T ss_conf 89999999999964997787558868999999999999976543998887079998388999971986799885689748
Q ss_pred CCCEEEEE
Q ss_conf 56215899
Q gi|254781172|r 331 AEKQASTR 338 (731)
Q Consensus 331 ~~e~~~T~ 338 (731)
|+++++||
T Consensus 311 ~~e~a~TT 318 (318)
T 1b04_A 311 PAEEVVTT 318 (318)
T ss_dssp CCC-----
T ss_pred CCCCCCCC
T ss_conf 85602689