HHsearch results for GI: 254781172 and protein with PDBid: 1dgs_A
>1dgs_A DNA ligase; AMP complex, NAD+-dependent; HET: DNA AMP; 2.90A {Thermus filiformis} SCOP: a.60.2.2 b.40.4.6 d.142.2.2 PDB: 1v9p_A*
Probab=100.00 E-value=0 Score=1473.85 Aligned_cols=661 Identities=36% Similarity=0.624 Sum_probs=618.1
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCHHHCCCCCCCCCCCCCCCC-CCCCCEEE
Q ss_conf 89999999999999999999984331779820878999999999999897720311589999620036432-35775045
Q gi|254781172|r 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEM-NLSLFKVT 90 (731)
Q Consensus 12 ~s~~~~~~~i~~L~~~i~~~~~~Yy~~~~p~isD~eYD~L~~~L~~le~~~p~~~~~~~p~spt~~Vg~~~-~~~~~kv~ 90 (731)
|+.++++++|.+|+++|++||++||++++|+|||++||+|+++|+.||++||++. +|+|||++||+.+ ...|.||+
T Consensus 1 m~~~~~~~~i~~L~~~i~~~~~~Yy~~~~p~isD~eYD~L~~~L~~Le~~~p~~~---~~~spt~~vG~~~~~~~~~kv~ 77 (667)
T 1dgs_A 1 MTREEARRRINELRDLIRYHNYRYYVLADPEISDAEYDRLLRELKELEERFPEFK---SPDSPTEQVGARPLEPTFRPVR 77 (667)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHTTCCCCSCSSSSHHHHHHHHHHTTSSGGGC---CTTSGGGGCSSSCCCCCCCEEE
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCCCC---CCCCCCCCCCCCCCCCCCCCEE
T ss_conf 9879999999999999999999986489997898999999999999998680556---9999853247733667876310
Q ss_pred CCCCCCCHHHCCCHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCEEEEEEEEECCEEEEEEECCCCHHHHHHHHHHHHH
Q ss_conf 16642570215999999999999998612467776119999415818999998599899888659865566699977531
Q gi|254781172|r 91 HSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAI 170 (731)
Q Consensus 91 H~~pMlSL~k~~~~~el~~w~~~~~~~~~~~~~~~~~~~vepKiDG~sisl~Y~~G~L~~a~TRGdG~~GeDVT~n~~~i 170 (731)
|+.|||||+|+|+.+|+.+|++|+.+.. .....|++|||+||+|+ |+|++|+| +.|||||.+|||||+|+++|
T Consensus 78 H~~pMlSL~k~~~~~el~~w~~ri~k~~----~~~~~~~~e~KlDG~s~-L~Ye~G~l--~~TRGdG~~GeDvT~~~~~i 150 (667)
T 1dgs_A 78 HPTRMYSLDNAFTYEEVLAFEERLEREA----EAPSLYTVEHKVDGLSV-LYYEEGVW--STGSGDGEVGEEVTQNLLTI 150 (667)
T ss_dssp CSSCCCCCCEECSHHHHHHHHHHTTSSS----CSCCEEEEEECCSCEEE-EEEETTEE--EEEECSSSEEEBCTGGGTSS
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHHC----CCCCCEEEEECCCEEEE-EEEECCEE--EEECCCCCCCEEHHHHHHHH
T ss_conf 8987766113799999999999998632----79972798764577899-99949958--99224797570888878766
Q ss_pred CCCCCCCCCCCCCEEEEEEEEEEECHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCHHHH-HCCCEEEEEEECCC---
Q ss_conf 02432233544550489999998520212345564314854334234567777523455553-01110566410245---
Q gi|254781172|r 171 PTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLGKT--- 246 (731)
Q Consensus 171 ~~iP~~l~~~~~~~ieiRGEv~m~~~~F~~lN~~~~~~g~~~f~NpRN~aaG~lr~~d~~~~-~r~L~f~ay~~~~~--- 246 (731)
++||++|+. .|+.+|||||+||++++|+++|+++.+.|+++|+||||+|||+||++||..+ .|.|.|++|.++..
T Consensus 151 ~~ip~~i~~-~~~~leiRGEi~~~~~~f~~~n~~~~~~~~~~f~NpRN~aaG~l~~k~~~~~~~r~l~~~~~~~~~~~~~ 229 (667)
T 1dgs_A 151 PTIPRRLKG-VPDRLEVRGEVYMPIEAFLRLNEELEERGEKVFKNPRNAAAGSLRQKDPRVTAKRGLRATFYALGLGLGL 229 (667)
T ss_dssp TTSCSBCSS-CCSEEEEEEEEECCHHHHHHHHHHHHHHTCCCCSSHHHHHHHHHSCSSHHHHHHSCCEEECCCBCTTTTT
T ss_pred CCCCHHCCC-CCCCEEECCCEEEEHHHHCCCCHHHHHHCCCCCCCHHHHHHHHHHCCCCCHHHHHCCEEEEEECCCCCCC
T ss_conf 057210268-8753264141797644301112889972576568878888877643566200110112576302223333
Q ss_pred CCCCCCCCHHHHHHHHHCCCCCCCCEEEEECCCCHHHHHHHHHHHHCCCCCCCCCEEEEECCHHCCCCCCCCCCCCCCEE
Q ss_conf 43321000036899997599665414887403211345566553100112343763777311000111587656866312
Q gi|254781172|r 247 SEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMI 326 (731)
Q Consensus 247 ~~~~~~~~~e~l~~L~~~GF~v~~~~~~~~~~~~~~~~~~~~~~~r~~l~y~iDGiVikvn~~~~q~~lG~ts~~Prwai 326 (731)
......+|++.+.+|+.|||+++++...+.+.+++.++++.|...|..+||+|||+|||+||+.+|+.||+|+|+|||||
T Consensus 230 ~~~~~~~~~~~~~~l~~~gf~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~y~iDGiVikvn~~~~~~~lG~ts~~PrwAi 309 (667)
T 1dgs_A 230 EESGLKSQYELLLWLKEKGFPVEHCYEKALGAEGVEEVYRRGLAQRHALPFEADGVVLKLDDLTLWGELGYTARAPRFAL 309 (667)
T ss_dssp TSCCCCBHHHHHHHHHHTTCCCCSCEEEEEHHHHHHHHHHHHHHTTTTSSSCCCEEEEEESBTHHHHHSCBCSSCBSSEE
T ss_pred CCCCCCCHHHHHHHHHHCCCCCCCHHEEECCHHHHHHHHHHHHHHCCCCCEECCCEEEEECCHHHHHHCCCCCCCCCEEE
T ss_conf 56764589999999875168887012110556889999999987432465131545997233555643488889977567
Q ss_pred EECCCCCEEEEEEEEEEEEECCCCEEEEEEEEEEEEECCCEEEEECCCCHHHHHHHCCCCCCCCCCCCCCCCCEEEEEEC
Q ss_conf 31145621589987889940356225899997433302640001014898999750234543222468440768999835
Q gi|254781172|r 327 SHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRA 406 (731)
Q Consensus 327 A~Kf~~e~~~T~v~~I~wqvgRtG~itPva~~ePV~l~G~~V~ratlhN~~~I~~l~~~~~~~~~~~~I~iGd~V~I~Ra 406 (731)
|||||+++++|+|++|+|||||||+|||||+|+||.|+|+||+||||||+++|++ +||+|||+|+|+||
T Consensus 310 A~Kf~~e~~~T~v~dI~~qvGRtG~itPvA~lePV~l~G~~VsraTlhN~~~i~~-----------~~i~iGd~V~I~ra 378 (667)
T 1dgs_A 310 AYKFPAEEKETRLLDVVFQVGRTGRVTPVGVLEPVFIEGSEVSRVTLHNESYIEE-----------LDIRIGDWVLVHKA 378 (667)
T ss_dssp EEECCCCCEEEEEEEEEEEECTTSBEEEEEEEEEEEETTEEEEEEECCSHHHHHH-----------TTCBSSCEEEEEEE
T ss_pred EECCHHHHCCEEEEEEEEEECCCCCCCEEEEEEEEEECCEEEEECCCCCHHHHHH-----------HCCCCCCEEEEEEC
T ss_conf 6125254212044269998337873133899753032767888515588889987-----------06765876665421
Q ss_pred CCCHHHHHHHCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCHHHHHHHHHHHHHCCCCCHHHH
Q ss_conf 87025665410123578730477704326577501033786544521010035434411446655332130123103541
Q gi|254781172|r 407 GEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486 (731)
Q Consensus 407 GdVIP~I~~Vi~~~r~~~~~~~~~P~~CP~Cgs~l~~~~~~~~~~~~~~~rC~n~~~Cpaq~~~~i~hF~SK~aldI~GL 486 (731)
|||||+|++|+.+.|+....++.+|..||+|+++++++. ..+||+|. .||+|++++|.||+||+||||+||
T Consensus 379 GdVIP~I~~vv~~~r~~~~~~~~~p~~cp~c~~~l~~~~--------~~~~C~n~-~C~~q~~~~l~~F~Sk~~l~I~Gl 449 (667)
T 1dgs_A 379 GGVIPEVLRVLKERRTGKERPIRWPEACPECGHRLVKEG--------KVHRCPNP-LCPAKRFEAIRHYASRKAMDIEGL 449 (667)
T ss_dssp TTTEEEEEEECGGGCCSCCCBCCCCSBCTTTCCBCEEET--------TEEECCCT-TCGGGHHHHHHHHHSTTSSCCTTC
T ss_pred CCCCCHHHCCCHHHCCCCCCCCCCCCCCCCCCCEEEECC--------HHEECCCC-CCCHHHHHHHHHHHCCCCCCCCCC
T ss_conf 466620311414327777778768988988683568602--------31024655-786678878787530244275760
Q ss_pred HHHHHHHHHCCCCCCEEEEEHHHHCCHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHH
Q ss_conf 03555565305765404541011010677753100010001342100145689999875223466677630101111689
Q gi|254781172|r 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEI 566 (731)
Q Consensus 487 G~k~Ie~L~e~~~~~g~I~~~~DLy~L~~~~~~~~~~l~~l~GfgeKsa~nL~~sIe~sK~~~L~r~L~ALGI~~vG~~~ 566 (731)
|+++|++|+++| +|++|+|||.|+.+ +|+++||||+||++||+++|++||+++|+|||+|||||++|+.+
T Consensus 450 G~~~i~~L~e~g----~I~~i~Diy~L~~~------~l~~l~gfg~ksa~nll~sIe~sk~~~l~r~L~aLGIp~vG~~~ 519 (667)
T 1dgs_A 450 GEKLIERLLEKG----LVRDVADLYHLRKE------DLLGLERMGEKSAQNLLRQIEESKHRGLERLLYALGLPGVGEVL 519 (667)
T ss_dssp CHHHHHHHHHTT----SCSSGGGGGGGCCH------HHHTTSSCCSTTHHHHHHHHHHGGGCCHHHHHHHTTCSSCCHHH
T ss_pred CHHHHHHHHHCC----CCCCHHHHHCCCHH------HHHCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHCCCCCCCHHH
T ss_conf 899999998678----72767884137887------76357763402378999998764146267777750678744899
Q ss_pred HHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCCCCCCCCC
Q ss_conf 99999882998999997897761251177876138886789999999996697999999999973387765432246882
Q gi|254781172|r 567 ARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSE 646 (731)
Q Consensus 567 Ak~La~~f~si~~l~~~~~~~~~~~~~~~e~L~~I~GiG~~~A~si~~ff~~~~n~~~i~~L~~~~~~~~~~~~~~~~~~ 646 (731)
|++|+.+|++++.+.. .+.++|.+|+|||+++|++|++||+++.|.+++++|...+.... .....+++
T Consensus 520 ak~L~~~f~~l~~l~~----------as~e~L~~I~GIG~~~A~si~~~f~~~~~~~~i~~L~~~g~~~~--~~~~~~~~ 587 (667)
T 1dgs_A 520 ARNLARRFGTMDRLLE----------ASLEELIEVEEVGELTARAILETLKDPAFRDLVRRLKEAGVSME--SKEEVSDL 587 (667)
T ss_dssp HHHHHHTTSBHHHHTT----------CCHHHHHTSTTCCHHHHHHHHHHHHCHHHHHHHHHHHHTTCCCB--CC------
T ss_pred HHHHHHHCCCHHHHHC----------CCHHHHHCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCC--CCCCCCCC
T ss_conf 9999887599999860----------79999857799489999999999759999999999997599877--65555885
Q ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHCCCEEEEEEECCEEEEEECCCCCCHHHHHHHCCCEEECHHHHHHHHHHHCCCCC
Q ss_conf 16866999725889987899999998298499811163217997788886379899749917379999999988286568
Q gi|254781172|r 647 IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNTTLR 726 (731)
Q Consensus 647 l~gk~vV~TGtl~~~~R~e~~~~ie~~Ggkv~sSVSkkT~~LI~ge~~gSKl~KA~~LgI~Ii~e~ef~~ll~~~~~~~~ 726 (731)
|+||+|||||+|+ ++|++++++||++||+|+|||||||||||+|+++|||++||++|||+||+|+||++||++....+|
T Consensus 588 l~gk~~v~TG~l~-~~R~e~~~~ie~~Ggkv~ssVSkkt~~Lv~g~~~gSKl~KA~~LgI~ii~e~ef~~~l~~~~~~~~ 666 (667)
T 1dgs_A 588 LSGLTFVLTGELS-RPREEVKALLGRLGAKVTDSVSRKTSYLVVGENPGSKLEKARALGVAVLTEEEFWRFLKEKGAPVP 666 (667)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCCCEEEEECCCC-CCHHHHHHHHHHCCCEECCCCCCCCCEEEECCCCCCHHHHHHHCCCEEECHHHHHHHHHHCCCCCC
T ss_conf 6898899985747-899999999997799997653166538998999884999999839908229999999985499999