HHsearch results for GI: 254781172 and protein with PDBid: 1ixr_A
>1ixr_A Holliday junction DNA helicase RUVA; heterooligomeric complex, octameric RUVA, AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ANP; 3.30A {Thermus thermophilus} SCOP: a.60.2.1 b.40.4.2
Probab=96.45 E-value=0.0094 Score=38.78 Aligned_cols=76 Identities=21% Similarity=0.232 Sum_probs=53.7
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHCC
Q ss_conf 01000134210014568999987522346667763010111168999999882998999997897761251177876138
Q gi|254781172|r 522 TKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRV 601 (731)
Q Consensus 522 ~~l~~l~GfgeKsa~nL~~sIe~sK~~~L~r~L~ALGI~~vG~~~Ak~La~~f~si~~l~~~~~~~~~~~~~~~e~L~~I 601 (731)
++-..|-||..+.-..++..+ +++.|||.++|-.|...+. .+.+..++. ..+...|..+
T Consensus 54 Ed~~~LyGF~~~~Er~lF~~L--------------i~V~GIGpK~Al~ILs~~~-~~~l~~aI~------~~D~~~L~~v 112 (191)
T 1ixr_A 54 EEGLSLYGFPDEENLALFELL--------------LSVSGVGPKVALALLSALP-PRLLARALL------EGDARLLTSA 112 (191)
T ss_dssp SSCCCEEEESSHHHHHHHHHH--------------HSSSCCCHHHHHHHHHHSC-HHHHHHHHH------TTCHHHHTTS
T ss_pred ECCCEEECCCCHHHHHHHHHH--------------HCCCCCCHHHHHHHHHCCC-HHHHHHHHH------CCCHHHHHCC
T ss_conf 078667711828999999998--------------5768837788988872599-999999998------3999995018
Q ss_pred CCCCHHHHHHHHHHHCC
Q ss_conf 88678999999999669
Q gi|254781172|r 602 PLVGDIIAQAIVEFYQN 618 (731)
Q Consensus 602 ~GiG~~~A~si~~ff~~ 618 (731)
+|||+|+|+.|+--+.+
T Consensus 113 pGIGkKtAerIilELk~ 129 (191)
T 1ixr_A 113 SGVGRRLAERIALELKG 129 (191)
T ss_dssp TTCCHHHHHHHHHHHTT
T ss_pred CCCCHHHHHHHHHHHHH
T ss_conf 88468899999999986