HHsearch results for GI: 254781172 and protein with PDBid: 1ixr_A

>1ixr_A Holliday junction DNA helicase RUVA; heterooligomeric complex, octameric RUVA, AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ANP; 3.30A {Thermus thermophilus} SCOP: a.60.2.1 b.40.4.2
Probab=96.45  E-value=0.0094  Score=38.78  Aligned_cols=76  Identities=21%  Similarity=0.232  Sum_probs=53.7

Q ss_pred             CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHCC
Q ss_conf             01000134210014568999987522346667763010111168999999882998999997897761251177876138
Q gi|254781172|r  522 TKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRV  601 (731)
Q Consensus       522 ~~l~~l~GfgeKsa~nL~~sIe~sK~~~L~r~L~ALGI~~vG~~~Ak~La~~f~si~~l~~~~~~~~~~~~~~~e~L~~I  601 (731)
                      ++-..|-||..+.-..++..+              +++.|||.++|-.|...+. .+.+..++.      ..+...|..+
T Consensus        54 Ed~~~LyGF~~~~Er~lF~~L--------------i~V~GIGpK~Al~ILs~~~-~~~l~~aI~------~~D~~~L~~v  112 (191)
T 1ixr_A           54 EEGLSLYGFPDEENLALFELL--------------LSVSGVGPKVALALLSALP-PRLLARALL------EGDARLLTSA  112 (191)
T ss_dssp             SSCCCEEEESSHHHHHHHHHH--------------HSSSCCCHHHHHHHHHHSC-HHHHHHHHH------TTCHHHHTTS
T ss_pred             ECCCEEECCCCHHHHHHHHHH--------------HCCCCCCHHHHHHHHHCCC-HHHHHHHHH------CCCHHHHHCC
T ss_conf             078667711828999999998--------------5768837788988872599-999999998------3999995018


Q ss_pred             CCCCHHHHHHHHHHHCC
Q ss_conf             88678999999999669
Q gi|254781172|r  602 PLVGDIIAQAIVEFYQN  618 (731)
Q Consensus       602 ~GiG~~~A~si~~ff~~  618 (731)
                      +|||+|+|+.|+--+.+
T Consensus       113 pGIGkKtAerIilELk~  129 (191)
T 1ixr_A          113 SGVGRRLAERIALELKG  129 (191)
T ss_dssp             TTCCHHHHHHHHHHHTT
T ss_pred             CCCCHHHHHHHHHHHHH
T ss_conf             88468899999999986