HHsearch results for GI: 254781172 and protein with PDBid: 1l0b_A

>1l0b_A BRCA1; TANDEM-BRCT, three-helix bundle, unknown function; 2.30A {Rattus norvegicus} SCOP: c.15.1.3 c.15.1.3
Probab=97.42  E-value=0.00059  Score=48.07  Aligned_cols=79  Identities=13%  Similarity=0.120  Sum_probs=57.4

Q ss_pred             CCCCCCCEEEEECCCCCCCHHHHHHHHHHCCCEEEEEEECC----EE--EEEECCC----CCCHHHHHHHCCCEEECHHH
Q ss_conf             88216866999725889987899999998298499811163----21--7997788----88637989974991737999
Q gi|254781172|r  644 SSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRK----TD--IIIVGDN----PGSKLEKAQQLGVKIMNEEQ  713 (731)
Q Consensus       644 ~~~l~gk~vV~TGtl~~~~R~e~~~~ie~~Ggkv~sSVSkk----T~--~LI~ge~----~gSKl~KA~~LgI~Ii~e~e  713 (731)
                      ...+.|..+++.|.+..-.+++++.+|+..||++.......    +.  .+++.+.    ...+..-|.+.+++|++.+.
T Consensus       115 ~~~~~~~~~~~~~~~~~~~~~~l~~li~~~Gg~v~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~iV~~~W  194 (229)
T 1l0b_A          115 EKLFEGLQIYCCEPFTNMPKDELERMLQLCGASVVKELPLLTRDTGAHPIVLVQPSAWTEDNDCPDIGQLCKGRLVMWDW  194 (229)
T ss_dssp             --CCTTCEEEECSCCSSSCHHHHHHHHHHTTCEEECSSSCGGGCCSSCCEEEEC-------------------CEEETHH
T ss_pred             CCCCCCCCEECCCCCCCCCHHHHHHHHHHCCCEEECCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHCCCCEEEHHH
T ss_conf             43237861132587778789999999998698885226643457773279996577420147999999975995970999


Q ss_pred             HHHHHHHHC
Q ss_conf             999998828
Q gi|254781172|r  714 FLFLLQQYN  722 (731)
Q Consensus       714 f~~ll~~~~  722 (731)
                      +.+=|..+.
T Consensus       195 l~dsi~~~~  203 (229)
T 1l0b_A          195 VLDSISVYR  203 (229)
T ss_dssp             HHHHHHTTS
T ss_pred             HHHHHHHCC
T ss_conf             999999498