HHsearch results for GI: 254781172 and protein with PDBid: 3bac_A
>3bac_A DNA ligase; adenylation domain, DNA damage, DNA repair, DNA replication, NAD; HET: DNA 3B9; 3.00A {Haemophilus influenzae}
Probab=100.00 E-value=0 Score=565.85 Aligned_cols=263 Identities=36% Similarity=0.602 Sum_probs=244.0
Q ss_pred CCCCCCCCEEECCCCCCCHHHCCCHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCEEEEEEEEECCEEEEEEECCCCHH
Q ss_conf 43235775045166425702159999999999999986124677761199994158189999985998998886598655
Q gi|254781172|r 80 GEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHS 159 (731)
Q Consensus 80 ~~~~~~~~kv~H~~pMlSL~k~~~~~el~~w~~~~~~~~~~~~~~~~~~~vepKiDG~sisl~Y~~G~L~~a~TRGdG~~ 159 (731)
|.|+++|.||+|++|||||+|+|+++||.+|++|+.+.+.... .+..|+|||||||+|++|+|++|+|++|+|||||.+
T Consensus 1 a~p~~~f~kv~H~~pMlSL~k~~~~~el~~w~~r~~~~l~~~~-~~~~~v~epKlDG~si~l~Y~~G~l~~a~TRGdG~~ 79 (270)
T 3bac_A 1 AKPLSGFSQIRHEIPMLSLDNAFSDAEFNAFVKRIEDRLILLP-KPLTFCCEPKLDGLAVSILYVNGELTQAATRGDGTT 79 (270)
T ss_dssp -----CCCEEECSSCCCCCCCCCSHHHHHHHHHHHHHHSSSCC-SSCEEEEEEEESSEEEEEEEETTEEEEEEECTTSSE
T ss_pred CCCCCCCCCCCCCCCCCCHHHCCCHHHHHHHHHHHHHHHCCCC-CCCEEEEEEEECCEEEEEEEECCEEEEEEEECCCHH
T ss_conf 9965368876279887551200999999999999998735688-773388887660439999960990766787159613
Q ss_pred HHHHHHHHHHHCCCCCCCCC-CCCCEEEEEEEEEEECHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCHHHH-HCCCE
Q ss_conf 66699977531024322335-44550489999998520212345564314854334234567777523455553-01110
Q gi|254781172|r 160 GEDVSACIRAIPTIPRVLSL-NIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLN 237 (731)
Q Consensus 160 GeDVT~n~~~i~~iP~~l~~-~~~~~ieiRGEv~m~~~~F~~lN~~~~~~g~~~f~NpRN~aaG~lr~~d~~~~-~r~L~ 237 (731)
|||||+|+++|.+||..+.. +.|+.++||||+||++++|+.+|+.+.+.++++|+||||+|||+||++||... .|.|.
T Consensus 80 GeDIT~~~~~i~~ip~~~~~~~~~~~~evrGE~~i~~~~f~~~n~~~~~~~~~~f~NpRN~aaG~l~~kd~~~~~~r~l~ 159 (270)
T 3bac_A 80 GEDITANIRTIRNVPLQLLTDNPPARLEVRGEVFMPHAGFERLNKYALEHNEKTFANPRNAAAGSLRQLDPNITSKRPLV 159 (270)
T ss_dssp EEBCHHHHHTCTTSCSBCCSSSCCSEEEEEEEEECCHHHHHHHHHHHHHTTCCCCSSHHHHHHHHHSCSSHHHHHHSCCE
T ss_pred HHHHHHHHHHHCCCCHHHHCCCCCCCCEEEEEEEEEECCEEEECHHHHHCCCCCCCCHHHHHHHHHHCCCCCHHHHCCCE
T ss_conf 67799999985466412202577543224358887533385501545412555430078898877642484013314640
Q ss_pred EEEEEECCCCC-CCCCCCHHHHHHHHHCCCCCCCCEEEEECCCCHHHHHHHHHHHHCCCCCCCCCEEEEECCHHCCCCCC
Q ss_conf 56641024543-32100003689999759966541488740321134556655310011234376377731100011158
Q gi|254781172|r 238 FFVHGLGKTSE-IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316 (731)
Q Consensus 238 f~ay~~~~~~~-~~~~~~~e~l~~L~~~GF~v~~~~~~~~~~~~~~~~~~~~~~~r~~l~y~iDGiVikvn~~~~q~~lG 316 (731)
|++|++..... ....+|++.|++|+.|||+++++...+.+.+++.+++++|.+.|.+++|+|||||||+||+.+|+.||
T Consensus 160 ~~~~~~~~~~~~~~~~~~~e~l~~L~~~GF~~~~~~~~~~~~~~~~~~~~~~~~~R~~l~Y~iDGiVikvn~~~~~~~LG 239 (270)
T 3bac_A 160 LNAYGIGIAEGVGLPTTHYARLQWLKSIGIPVNPEIRLCNGADEVLDFYQDIQNKRSSLGYDIDGTVLKINDIALQNELG 239 (270)
T ss_dssp EEEEEEEEECSCCCCSBHHHHHHHHHHTTCCBCTTCEEEEHHHHHHHHHHHHHTTTTTTSSCEEEEEEEESBHHHHHHHC
T ss_pred EEEEEEEEECCCCCCCHHHHHHHHHHHCCCCCCCCEEEECCHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECHHHHHHCC
T ss_conf 79999865147667630999999999719988867289888999999999999750059998760899995889999739
Q ss_pred CCCCCCCCEEEECCCCCEEEEEEEEEE
Q ss_conf 765686631231145621589987889
Q gi|254781172|r 317 ERARSPRWMISHKFAEKQASTRLLDID 343 (731)
Q Consensus 317 ~ts~~PrwaiA~Kf~~e~~~T~v~~I~ 343 (731)
+|||+|||||||||++++++|+|+|-.
T Consensus 240 ~Ts~~PrwAiAfKf~~e~a~T~l~D~~ 266 (270)
T 3bac_A 240 FISKAPRWAIAYKFPAQEELTLLNDHH 266 (270)
T ss_dssp CCCCSCSSCCCCCCCCCCCCC------
T ss_pred CCCCCCCCEEEECCCCCCEEEEEEECC
T ss_conf 837898844898688663049997256