HHsearch results for GI: 254781172 and protein with PDBid: 3ii6_X

>3ii6_X DNA ligase 4; XRCC4, NHEJ, DNA repair, BRCT, alternative splicing, coiled coil, DNA damage, DNA recombination, isopeptide bond, nucleus; HET: DNA; 2.40A {Homo sapiens} PDB: 2e2w_A*

Probab=92.79  E-value=0.49  Score=25.53  Aligned_cols=82  Identities=9%  Similarity=0.134  Sum_probs=68.0

Q ss_pred             CCCCCCCCCCEEEEECCCCCCCHHHHHHHHHHCCCEEEEEEECCEEEEEECCCCCCHHHHHHHC-CCEEECHHHHHHHHH
Q ss_conf             2468821686699972588998789999999829849981116321799778888637989974-991737999999998
Q gi|254781172|r  641 KNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQL-GVKIMNEEQFLFLLQ  719 (731)
Q Consensus       641 ~~~~~~l~gk~vV~TGtl~~~~R~e~~~~ie~~Ggkv~sSVSkkT~~LI~ge~~gSKl~KA~~L-gI~Ii~e~ef~~ll~  719 (731)
                      ...+..|.|+.||++..++...|.+++++|+.+||+++.+++++|++||++. .|.|..+|.+- +|+|++.+.+.+-+.
T Consensus         5 ~~~s~iF~g~~f~v~sg~~~~~r~~l~~~I~~~GG~~~~~l~~~t~~vi~~~-~~~k~~~~~~~~~i~iV~~~Wl~dci~   83 (263)
T 3ii6_X            5 SKISNIFEDVEFCVMSGTDSQPKPDLENRIAEFGGYIVQNPGPDTYCVIAGS-ENIRVKNIILSNKHDVVKPAWLLECFK   83 (263)
T ss_dssp             -CCCCTTTTCEEEECCCC--CCHHHHHHHHHHTTCEECSSCCTTEEEEECSS-CCHHHHHHHHSCSCCEECHHHHHHHHH
T ss_pred             CCCCCCCCCCEEEEECCCCCCCHHHHHHHHHHCCCEEEEECCCCCEEEEEEC-CCHHHHHHHHCCCCCEEEEHHHHHHHH
T ss_conf             7566246996899968988417999999999779999702699958999807-980899999829998994089999987


Q ss_pred             HHCC
Q ss_conf             8286
Q gi|254781172|r  720 QYNT  723 (731)
Q Consensus       720 ~~~~  723 (731)
                      +...
T Consensus        84 ~~~~   87 (263)
T 3ii6_X           84 TKSF   87 (263)
T ss_dssp             HTSC
T ss_pred             CCCC
T ss_conf             5882