HHsearch results for GI: 254781172 and protein with PDBid: 3l3e_A
>3l3e_A DNA topoisomerase 2-binding protein 1; BRCT domain, DNA repair, cell cycle checkpoints, acetylation, cytoplasm, cytoskeleton, DNA damage; HET: DNA; 1.26A {Homo sapiens} PDB: 3jve_A*
Probab=98.43 E-value=1e-06 Score=69.35 Aligned_cols=81 Identities=15% Similarity=0.224 Sum_probs=68.6
Q ss_pred CCCCCCCCCCEEEEECCCCCCCHHHHHHHHHHCCCEEEEEEECCEEEEEECCCCC---CHHHHHHHCCCEEECHHHHHHH
Q ss_conf 2468821686699972588998789999999829849981116321799778888---6379899749917379999999
Q gi|254781172|r 641 KNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG---SKLEKAQQLGVKIMNEEQFLFL 717 (731)
Q Consensus 641 ~~~~~~l~gk~vV~TGtl~~~~R~e~~~~ie~~Ggkv~sSVSkkT~~LI~ge~~g---SKl~KA~~LgI~Ii~e~ef~~l 717 (731)
.....+|.|..||+||... -.|.++.++++.+||+++.++++++++||+++..+ .|+..|+..||+|++.+.+.+-
T Consensus 10 ~~~~~~l~g~~i~~sg~~~-~~~~~l~~~i~~~Gg~~~~~~~~~~THlI~~~~~~~~~~k~~~a~~~~i~iV~~~Wl~~c 88 (107)
T 3l3e_A 10 EEAPKPLHKVVVCVSKKLS-KKQSELNGIAASLGADYRRSFDETVTHFIYQGRPNDTNREYKSVKERGVHIVSEHWLLDC 88 (107)
T ss_dssp ----CTTTTCEEEECGGGG-GGHHHHHHHHHHTTCEEESSCCTTCCEEECCCCTTCCCHHHHHHHHTTCEEECHHHHHHH
T ss_pred CCCCCCCCCEEEEEECCCH-HHHHHHHHHHHHCCCEECCCCCCCCEEEEEECCCCCCHHHHHHHHHCCCEEECHHHHHHH
T ss_conf 6678777874999815898-999999999999499863533677438997067888599999988379879789999999
Q ss_pred HHHHC
Q ss_conf 98828
Q gi|254781172|r 718 LQQYN 722 (731)
Q Consensus 718 l~~~~ 722 (731)
+....
T Consensus 89 ~~~~~ 93 (107)
T 3l3e_A 89 AQECK 93 (107)
T ss_dssp HHHTS
T ss_pred HHHCC
T ss_conf 99298